BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Reference for composition-based statistics starting in round 2: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= gi|254780345|ref|YP_003064758.1| transcription antitermination protein NusB [Candidatus Liberibacter asiaticus str. psy62] (170 letters) Database: nr 14,124,377 sequences; 4,842,793,630 total letters Searching..................................................done Results from round 1 >gi|254780345|ref|YP_003064758.1| transcription antitermination protein NusB [Candidatus Liberibacter asiaticus str. psy62] gi|254040022|gb|ACT56818.1| transcription antitermination protein NusB [Candidatus Liberibacter asiaticus str. psy62] Length = 170 Score = 346 bits (888), Expect = 5e-94, Method: Compositional matrix adjust. Identities = 170/170 (100%), Positives = 170/170 (100%) Query: 1 MTIQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESV 60 MTIQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESV Sbjct: 1 MTIQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESV 60 Query: 61 YLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHS 120 YLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHS Sbjct: 61 YLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHS 120 Query: 121 VPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRSGCVSAITQ 170 VPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRSGCVSAITQ Sbjct: 121 VPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRSGCVSAITQ 170 >gi|315122231|ref|YP_004062720.1| transcription antitermination protein NusB [Candidatus Liberibacter solanacearum CLso-ZC1] gi|313495633|gb|ADR52232.1| transcription antitermination protein NusB [Candidatus Liberibacter solanacearum CLso-ZC1] Length = 170 Score = 257 bits (656), Expect = 4e-67, Method: Compositional matrix adjust. Identities = 121/170 (71%), Positives = 143/170 (84%) Query: 1 MTIQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESV 60 MTIQDNK +KL+ RRGIAR++AVQALYQIDI+GCS ++ISEYE +RFCAD ++D +++ Sbjct: 1 MTIQDNKTTVKLALRRGIARISAVQALYQIDIVGCSLVDVISEYEMHRFCADKDIDEDNI 60 Query: 61 YLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHS 120 Y VDLEWF I+HGV+ K+ +D LISSCLTEKWSFSRLD+ILC+ILRAGV ELIECHS Sbjct: 61 YSQVDLEWFHTIMHGVVKNKELVDSLISSCLTEKWSFSRLDLILCAILRAGVFELIECHS 120 Query: 121 VPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRSGCVSAITQ 170 VPV VIISEYVCIAHDF YGDEPKF+NAVLDKVSR E++ SAI Q Sbjct: 121 VPVRVIISEYVCIAHDFLYGDEPKFVNAVLDKVSRTPEVQSKRSDSAIIQ 170 >gi|222148209|ref|YP_002549166.1| transcription antitermination protein NusB [Agrobacterium vitis S4] gi|254772608|sp|B9JV80|NUSB_AGRVS RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|221735197|gb|ACM36160.1| transcription antitermination factor NusB [Agrobacterium vitis S4] Length = 160 Score = 163 bits (413), Expect = 6e-39, Method: Compositional matrix adjust. Identities = 77/156 (49%), Positives = 108/156 (69%), Gaps = 3/156 (1%) Query: 1 MTIQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESV 60 MT ++NK +K +++RG ARLAAVQALYQ+DI G E+++EYET+R E+D E+ Sbjct: 1 MTTENNKPPVKTANQRGAARLAAVQALYQMDIGGTGVLEVVAEYETHRLG--QEIDGET- 57 Query: 61 YLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHS 120 YL D WFR I+ GV+ + ID LI L + WS +R+D + +ILRAG EL+E Sbjct: 58 YLKADASWFRSIVAGVVRDQTKIDPLIRQALQDDWSLARVDSTVRAILRAGTFELLERKD 117 Query: 121 VPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRK 156 VP+ VI++EYV IAH FF DEPK +NAVLD+++++ Sbjct: 118 VPIAVIVTEYVEIAHAFFQEDEPKLVNAVLDRIAKQ 153 >gi|222085516|ref|YP_002544046.1| transcription antitermination factor NusB [Agrobacterium radiobacter K84] gi|254772607|sp|B9JCY3|NUSB_AGRRK RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|221722964|gb|ACM26120.1| transcription antitermination factor NusB [Agrobacterium radiobacter K84] Length = 160 Score = 162 bits (409), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 76/156 (48%), Positives = 108/156 (69%), Gaps = 3/156 (1%) Query: 1 MTIQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESV 60 M+ QDN++ K +++RG ARLAAVQALYQ+DI G E+++EYE +R ELD ++ Sbjct: 1 MSNQDNERPAKTANQRGAARLAAVQALYQMDIGGTGVLEVVAEYEAHRLG--QELDGDT- 57 Query: 61 YLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHS 120 YL D WFR I+ GV+ + +D LI S L + W+ SRLD + +ILRAG E+++ Sbjct: 58 YLKADASWFRSIVSGVVREQTRLDPLIGSALQDDWALSRLDSTVRAILRAGTFEILDRKD 117 Query: 121 VPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRK 156 VPV VI++EYV IAH FF DEPK +NAVLD+++++ Sbjct: 118 VPVAVIVTEYVEIAHAFFDDDEPKLVNAVLDRIAKQ 153 >gi|319408451|emb|CBI82106.1| N utilization substance protein B [Bartonella schoenbuchensis R1] Length = 156 Score = 159 bits (401), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 70/145 (48%), Positives = 104/145 (71%), Gaps = 3/145 (2%) Query: 12 LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71 L+++RG+ARLAAVQALYQ+DI+G EI +EY+ YR D + D YL D +WFR Sbjct: 12 LANKRGVARLAAVQALYQMDIVGIGVREIAAEYKAYRLGKDIDGDQ---YLDADFQWFRA 68 Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131 +I GV+ ++ +D ++ L+E+WS SRLD IL +ILRAG+ EL+ ++P VI+SEYV Sbjct: 69 VIAGVVQNQKQLDPMLQQKLSEEWSLSRLDSILRAILRAGLWELMNHKNIPTAVIVSEYV 128 Query: 132 CIAHDFFYGDEPKFINAVLDKVSRK 156 +A FF GDEP+ +NA+LD+++++ Sbjct: 129 DVAKAFFEGDEPRLVNAILDRIAKE 153 >gi|49475530|ref|YP_033571.1| transcription antitermination protein NusB [Bartonella henselae str. Houston-1] gi|81647946|sp|Q6G3K8|NUSB_BARHE RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|49238336|emb|CAF27560.1| N utilization substance protein B [Bartonella henselae str. Houston-1] Length = 158 Score = 157 bits (398), Expect = 3e-37, Method: Compositional matrix adjust. Identities = 74/152 (48%), Positives = 103/152 (67%), Gaps = 3/152 (1%) Query: 5 DNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHV 64 + K +L+++RG ARLAAVQALYQ+DI+G E +EYE YR D + D YL Sbjct: 5 EGKYSPRLANKRGAARLAAVQALYQMDIVGSGVMETAAEYEAYRLGKDIDGDQ---YLDA 61 Query: 65 DLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVE 124 D +WF II GV+ ++ +D +++ L+ +WS SRLD IL +ILRAG+ ELI VP+ Sbjct: 62 DFQWFLAIITGVVKDQKQLDPMLNQQLSAEWSLSRLDSILRAILRAGLWELINRQDVPIA 121 Query: 125 VIISEYVCIAHDFFYGDEPKFINAVLDKVSRK 156 V++SEYV IA FF GDEPK +NA+LD +++K Sbjct: 122 VVMSEYVDIAKAFFEGDEPKLVNAILDSMAKK 153 >gi|319784157|ref|YP_004143633.1| transcription antitermination factor NusB [Mesorhizobium ciceri biovar biserrulae WSM1271] gi|317170045|gb|ADV13583.1| transcription antitermination factor NusB [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 166 Score = 155 bits (392), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 73/147 (49%), Positives = 101/147 (68%), Gaps = 3/147 (2%) Query: 10 LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF 69 ++ +++RG ARLAAVQALYQ+D+ G EI +EYE +R + + ++Y D +WF Sbjct: 12 MRHANKRGAARLAAVQALYQMDVAGSGVFEITAEYEAFRLGKEVD---GALYREADAQWF 68 Query: 70 RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISE 129 R I+ GV++ ++ ID +I LTE W SRLD L +ILRAGV EL++ VPV VI+SE Sbjct: 69 RAILAGVVENQKTIDPIIRQALTEDWPLSRLDSTLRAILRAGVYELMKREDVPVAVIVSE 128 Query: 130 YVCIAHDFFYGDEPKFINAVLDKVSRK 156 YV IA F+ DEPK +NAVLD+VSR+ Sbjct: 129 YVDIAKAFYEEDEPKLVNAVLDRVSRR 155 >gi|240850687|ref|YP_002972087.1| transcription antitermination protein NusB [Bartonella grahamii as4aup] gi|240267810|gb|ACS51398.1| transcription antitermination protein NusB [Bartonella grahamii as4aup] Length = 156 Score = 153 bits (387), Expect = 6e-36, Method: Compositional matrix adjust. Identities = 74/144 (51%), Positives = 98/144 (68%), Gaps = 3/144 (2%) Query: 13 SHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVI 72 +++RG ARLAAVQALYQ+DI+G E +EYE YR D + D YL D +WF I Sbjct: 13 ANKRGAARLAAVQALYQMDIVGSGVMETAAEYEAYRLGKDIDGDQ---YLEADFQWFLAI 69 Query: 73 IHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVC 132 I GV+ ++ +D L+ L+ +WS SRLD IL +ILRAG+ ELI VPV V+++EYV Sbjct: 70 ITGVVKDQKQLDPLLHQQLSAEWSLSRLDSILRAILRAGLWELINRKDVPVAVVMNEYVD 129 Query: 133 IAHDFFYGDEPKFINAVLDKVSRK 156 IA FF GDEPK +NAVLD +++K Sbjct: 130 IAKAFFEGDEPKLVNAVLDSMAKK 153 >gi|260466838|ref|ZP_05813022.1| NusB antitermination factor [Mesorhizobium opportunistum WSM2075] gi|259029340|gb|EEW30632.1| NusB antitermination factor [Mesorhizobium opportunistum WSM2075] Length = 166 Score = 153 bits (387), Expect = 7e-36, Method: Compositional matrix adjust. Identities = 73/144 (50%), Positives = 99/144 (68%), Gaps = 3/144 (2%) Query: 13 SHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVI 72 +++RG ARLAAVQALYQ+D+ G EI +EYE +R + + ++Y D +WFR I Sbjct: 15 ANKRGAARLAAVQALYQMDVAGSGVFEITAEYEAFRLGKEVD---GALYREADAQWFRAI 71 Query: 73 IHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVC 132 + GV++ ++ ID +I LTE W SRLD L +ILRAGV EL++ VPV VI+SEYV Sbjct: 72 LTGVVEDQKTIDPIIRQSLTEDWPLSRLDSTLRAILRAGVYELMKREDVPVAVIVSEYVD 131 Query: 133 IAHDFFYGDEPKFINAVLDKVSRK 156 IA F+ DEPK +NAVLD+VSR+ Sbjct: 132 IAKAFYEEDEPKLVNAVLDRVSRR 155 >gi|163759209|ref|ZP_02166295.1| transcription antitermination protein NusB [Hoeflea phototrophica DFL-43] gi|162283613|gb|EDQ33898.1| transcription antitermination protein NusB [Hoeflea phototrophica DFL-43] Length = 164 Score = 153 bits (386), Expect = 9e-36, Method: Compositional matrix adjust. Identities = 77/167 (46%), Positives = 108/167 (64%), Gaps = 7/167 (4%) Query: 1 MTIQDNKKD-LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVES 59 MT + N + +K +++RG ARLAAVQALYQ+DI G E+++EYE +R E+D E Sbjct: 1 MTTEQNPEPAVKTANQRGAARLAAVQALYQMDIGGAGVLEVVAEYEAHRLG--HEIDGEQ 58 Query: 60 VYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECH 119 Y D WF+ ++ GV++ ++ +D +I S LTE W SRLD L +ILRAG EL Sbjct: 59 -YRPADAAWFKAVVSGVVENQRALDPVIRSSLTEDWPLSRLDATLRAILRAGAWELSSKK 117 Query: 120 SVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRK---EEIKRSG 163 VPV VI++EYV +A FF DEPK +NAVLD+++RK E+ + G Sbjct: 118 DVPVAVIVTEYVDVARAFFEEDEPKIVNAVLDRLARKYRAEQTPKQG 164 >gi|227821538|ref|YP_002825508.1| transcription antitermination protein NusB [Sinorhizobium fredii NGR234] gi|254772651|sp|C3M9I9|NUSB_RHISN RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|227340537|gb|ACP24755.1| N utilization substance protein B [Sinorhizobium fredii NGR234] Length = 160 Score = 152 bits (385), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 75/156 (48%), Positives = 106/156 (67%), Gaps = 3/156 (1%) Query: 1 MTIQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESV 60 MT + + LK +++RG ARLAAVQALYQ++I G EI++E+E +R ELD E+ Sbjct: 1 MTNTPSDQPLKQANQRGAARLAAVQALYQMEIGGTGVLEIVAEFEAHRLG--QELDGET- 57 Query: 61 YLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHS 120 YL D WFR I+ GV+ ++ +D LI S L + W+ SRLD + +ILRAG EL+E Sbjct: 58 YLKADASWFRSIVSGVVRDQRKLDPLIGSALQDDWALSRLDSTVRAILRAGTFELLERKD 117 Query: 121 VPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRK 156 VPV VI++EYV IA FF +EPK +NAVLD+++++ Sbjct: 118 VPVAVIVTEYVEIAKAFFEDEEPKLVNAVLDRIAKQ 153 >gi|319898989|ref|YP_004159082.1| N utilization substance protein B [Bartonella clarridgeiae 73] gi|319402953|emb|CBI76504.1| N utilization substance protein B [Bartonella clarridgeiae 73] Length = 156 Score = 152 bits (385), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 79/156 (50%), Positives = 106/156 (67%), Gaps = 5/156 (3%) Query: 6 NKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVD 65 +K L+L+++RG ARLAAVQALYQ+DIIG EII+EYE YR + + D YL D Sbjct: 6 SKDSLRLANKRGAARLAAVQALYQMDIIGTGVIEIIAEYEAYRLGKNIDGDQ---YLDAD 62 Query: 66 LEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEV 125 +WF II GV+ ++ +D ++ L+E+W+ SRLD L +ILRAG+ ELI VPV V Sbjct: 63 FQWFCSIIVGVVKDQKQLDPMLHQKLSEEWALSRLDSTLRAILRAGLWELINRKDVPVAV 122 Query: 126 IISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKR 161 II+EYV IA FF DEP+ +NAVLD +++ EI R Sbjct: 123 IINEYVDIAKAFFESDEPRLVNAVLDNIAK--EIGR 156 >gi|13476941|ref|NP_108511.1| transcription antitermination protein NusB [Mesorhizobium loti MAFF303099] gi|22095963|sp|Q983A9|NUSB_RHILO RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|14027704|dbj|BAB54297.1| N-utilization substance protein B [Mesorhizobium loti MAFF303099] Length = 155 Score = 152 bits (383), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 72/147 (48%), Positives = 101/147 (68%), Gaps = 3/147 (2%) Query: 10 LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF 69 ++ +++RG ARLAAVQALYQ+D+ G EI +EYE +R + + ++Y D +WF Sbjct: 1 MRHANKRGAARLAAVQALYQMDVAGSGVFEITAEYEAFRLGKEVD---GALYREADAQWF 57 Query: 70 RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISE 129 R I+ GV++ ++ ID +I LT+ W SRLD L +ILRAGV EL++ VPV VI+SE Sbjct: 58 RAILTGVVEDQKTIDPVIRQALTDDWPLSRLDSTLRAILRAGVYELMKREDVPVAVIVSE 117 Query: 130 YVCIAHDFFYGDEPKFINAVLDKVSRK 156 YV IA F+ DEPK +NAVLD+VSR+ Sbjct: 118 YVDIAKAFYEEDEPKLVNAVLDRVSRR 144 >gi|150396046|ref|YP_001326513.1| transcription antitermination protein NusB [Sinorhizobium medicae WSM419] gi|166215721|sp|A6U7P8|NUSB_SINMW RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|150027561|gb|ABR59678.1| NusB antitermination factor [Sinorhizobium medicae WSM419] Length = 160 Score = 151 bits (382), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 74/156 (47%), Positives = 105/156 (67%), Gaps = 3/156 (1%) Query: 1 MTIQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESV 60 MT + + LK ++RG ARLAAVQALYQ+D+ G EI++EYE +R ELD ++ Sbjct: 1 MTNTPSDQPLKQVNQRGAARLAAVQALYQMDVGGTGVLEIVAEYEEHRLG--KELDGDT- 57 Query: 61 YLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHS 120 YL D WFR I+ GV+ ++ +D LI S L + W+ SRLD + +ILRAG E++E Sbjct: 58 YLRADASWFRSIVAGVVRDQRKLDPLIGSALQDDWALSRLDSTVRAILRAGTFEILERKD 117 Query: 121 VPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRK 156 VPV VI++EYV IA FF +EPK +NAVLD+++++ Sbjct: 118 VPVPVIVTEYVEIAKAFFQDEEPKLVNAVLDRIAKQ 153 >gi|15964969|ref|NP_385322.1| transcription antitermination protein NusB [Sinorhizobium meliloti 1021] gi|307301040|ref|ZP_07580809.1| NusB antitermination factor [Sinorhizobium meliloti BL225C] gi|307317774|ref|ZP_07597212.1| NusB antitermination factor [Sinorhizobium meliloti AK83] gi|22095960|sp|Q92QT9|NUSB_RHIME RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|15074148|emb|CAC45795.1| Putative N utilization substance protein B [Sinorhizobium meliloti 1021] gi|306896536|gb|EFN27284.1| NusB antitermination factor [Sinorhizobium meliloti AK83] gi|306903995|gb|EFN34581.1| NusB antitermination factor [Sinorhizobium meliloti BL225C] Length = 160 Score = 151 bits (382), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 74/156 (47%), Positives = 105/156 (67%), Gaps = 3/156 (1%) Query: 1 MTIQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESV 60 MT + + LK ++RG ARLAAVQALYQ+D+ G EI++EYE +R ELD ++ Sbjct: 1 MTNTPSDQPLKQVNQRGAARLAAVQALYQMDVGGTGVLEIVAEYEEHRLG--KELDGDT- 57 Query: 61 YLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHS 120 YL D WFR I+ GV+ ++ +D LI S L + W+ SRLD + +ILRAG E++E Sbjct: 58 YLRADASWFRSIVAGVVRDQRKLDPLIGSALQDDWALSRLDSTVRAILRAGTFEILERKD 117 Query: 121 VPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRK 156 VPV VI++EYV IA FF +EPK +NAVLD+++++ Sbjct: 118 VPVPVIVTEYVEIAKAFFQDEEPKLVNAVLDRIAKQ 153 >gi|190891211|ref|YP_001977753.1| transcription antitermination protein B [Rhizobium etli CIAT 652] gi|218514737|ref|ZP_03511577.1| transcription antitermination protein NusB [Rhizobium etli 8C-3] gi|238692516|sp|B3PVD4|NUSB_RHIE6 RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|190696490|gb|ACE90575.1| transcription antitermination protein B [Rhizobium etli CIAT 652] Length = 160 Score = 151 bits (382), Expect = 3e-35, Method: Compositional matrix adjust. Identities = 72/156 (46%), Positives = 107/156 (68%), Gaps = 3/156 (1%) Query: 1 MTIQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESV 60 M+ + ++ +K +++RG ARLAAVQALYQ+D+ G EI++EYE +R E+D + Sbjct: 1 MSDEKTERPVKTANQRGAARLAAVQALYQMDVGGTGVLEIVAEYEAHRLG--QEID-GAT 57 Query: 61 YLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHS 120 YL D WFR I+ GV+ + +D LI++ L + W+ SRLD + +ILRAGV EL++ Sbjct: 58 YLKADAGWFRSIVSGVVRDQVRLDPLIAAALQDDWALSRLDSTVRAILRAGVFELLDRKD 117 Query: 121 VPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRK 156 VPV VI++EYV IA FF DEPK +NAVLD+++++ Sbjct: 118 VPVAVIVTEYVEIAQAFFDDDEPKLVNAVLDRIAKQ 153 >gi|327191850|gb|EGE58847.1| transcription antitermination protein B [Rhizobium etli CNPAF512] Length = 160 Score = 151 bits (382), Expect = 3e-35, Method: Compositional matrix adjust. Identities = 72/156 (46%), Positives = 107/156 (68%), Gaps = 3/156 (1%) Query: 1 MTIQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESV 60 M+ + ++ +K +++RG ARLAAVQALYQ+D+ G EI++EYE +R E+D + Sbjct: 1 MSDEKTERPVKTANQRGAARLAAVQALYQMDVGGTGVLEIVAEYEAHRLG--QEID-GAT 57 Query: 61 YLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHS 120 YL D WFR I+ GV+ + +D LI++ L + W+ SRLD + +ILRAGV EL++ Sbjct: 58 YLKADAGWFRSIVSGVVRDQVRLDPLIAAALQDDWALSRLDSTVRAILRAGVFELLDRKD 117 Query: 121 VPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRK 156 VPV VI++EYV IA FF DEPK +NAVLD+++++ Sbjct: 118 VPVAVIVTEYVEIAQAFFDDDEPKLVNAVLDRIAKQ 153 >gi|163868463|ref|YP_001609672.1| transcription antitermination protein NusB [Bartonella tribocorum CIP 105476] gi|189035879|sp|A9IVB9|NUSB_BART1 RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|161018119|emb|CAK01677.1| N utilization substance protein B [Bartonella tribocorum CIP 105476] Length = 156 Score = 151 bits (381), Expect = 3e-35, Method: Compositional matrix adjust. Identities = 73/144 (50%), Positives = 97/144 (67%), Gaps = 3/144 (2%) Query: 13 SHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVI 72 +++RG ARLAAVQALYQ+DI+G E +EYE YR D + D YL D +WF I Sbjct: 13 ANKRGAARLAAVQALYQMDIVGSGVMETAAEYEAYRLGKDIDGDQ---YLDADFQWFLAI 69 Query: 73 IHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVC 132 I GV+ ++ +D L+ L+ +WS SRLD IL +ILRA + ELI VPV V+++EYV Sbjct: 70 ITGVVQDQKQLDPLLHQQLSAEWSLSRLDSILRAILRAALWELINRKDVPVAVVVNEYVD 129 Query: 133 IAHDFFYGDEPKFINAVLDKVSRK 156 IA FF GDEPK +NAVLD +++K Sbjct: 130 IAKAFFEGDEPKLVNAVLDSMAKK 153 >gi|319404314|emb|CBI77907.1| N utilization substance protein B [Bartonella rochalimae ATCC BAA-1498] Length = 156 Score = 151 bits (381), Expect = 3e-35, Method: Compositional matrix adjust. Identities = 69/151 (45%), Positives = 104/151 (68%), Gaps = 3/151 (1%) Query: 6 NKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVD 65 K L+L+++RG ARLAAVQALYQ+D++G E+I+EY+ YR D + + YL D Sbjct: 6 GKDSLRLANKRGAARLAAVQALYQMDMVGIGAMEVIAEYKAYRLGKDID---GNQYLDAD 62 Query: 66 LEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEV 125 +WFR II GV+ ++ +D ++ L+E+W+ SRLD L +ILRAG+ ELI +P+ V Sbjct: 63 FQWFRSIIVGVVRDQKQLDPMLHQQLSEEWALSRLDSTLRAILRAGLWELINRKGMPIAV 122 Query: 126 IISEYVCIAHDFFYGDEPKFINAVLDKVSRK 156 I++EY+ IA FF DEP+ +NAVLD ++++ Sbjct: 123 ILNEYIDIAKAFFDNDEPRLVNAVLDSIAKE 153 >gi|325292546|ref|YP_004278410.1| transcription antitermination protein NusB [Agrobacterium sp. H13-3] gi|325060399|gb|ADY64090.1| transcription antitermination protein NusB [Agrobacterium sp. H13-3] Length = 165 Score = 151 bits (381), Expect = 4e-35, Method: Compositional matrix adjust. Identities = 73/160 (45%), Positives = 103/160 (64%), Gaps = 5/160 (3%) Query: 4 QDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLH 63 + + +K +++RG ARLAAVQALYQ+D+ G E+++EYE +R + + D YL Sbjct: 9 EPRQPSVKPANQRGAARLAAVQALYQMDVGGTGVMEVVAEYEAHRLGQEVDGDT---YLK 65 Query: 64 VDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPV 123 D WFR I+ GV+ + ID L+ S L E W SRLD + +ILRAG E++E VPV Sbjct: 66 ADPSWFRSIVSGVVRDQTKIDPLVRSALLEDWPLSRLDATVRAILRAGAFEILERKDVPV 125 Query: 124 EVIISEYVCIAHDFFYGDEPKFINAVLDKVSR--KEEIKR 161 VI++EYV IA FF DEPK +NAVLD++++ + E KR Sbjct: 126 AVIVTEYVEIARAFFEHDEPKLVNAVLDRIAKQVRGEAKR 165 >gi|159184647|ref|NP_354190.2| transcription antitermination protein NusB [Agrobacterium tumefaciens str. C58] gi|22095943|sp|Q8UG69|NUSB_AGRT5 RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|159139945|gb|AAK86975.2| Putative transcription antitermination protein NusB [Agrobacterium tumefaciens str. C58] Length = 165 Score = 150 bits (380), Expect = 4e-35, Method: Compositional matrix adjust. Identities = 73/160 (45%), Positives = 103/160 (64%), Gaps = 5/160 (3%) Query: 4 QDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLH 63 + + +K +++RG ARLAAVQALYQ+D+ G E+++EYE +R + + D YL Sbjct: 9 EPRQPSVKPANQRGAARLAAVQALYQMDVGGTGVMEVVAEYEAHRLGQEVDGDT---YLK 65 Query: 64 VDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPV 123 D WFR I+ GV+ + ID L+ S L E W SRLD + +ILRAG E++E VPV Sbjct: 66 ADPSWFRSIVSGVVRDQTKIDPLVRSALLEDWPLSRLDATVRAILRAGTFEILERKDVPV 125 Query: 124 EVIISEYVCIAHDFFYGDEPKFINAVLDKVSR--KEEIKR 161 VI++EYV IA FF DEPK +NAVLD++++ + E KR Sbjct: 126 AVIVTEYVEIARAFFEHDEPKLVNAVLDRIAKQVRGEAKR 165 >gi|319405757|emb|CBI79380.1| N utilization substance protein B [Bartonella sp. AR 15-3] Length = 156 Score = 150 bits (379), Expect = 5e-35, Method: Compositional matrix adjust. Identities = 72/151 (47%), Positives = 103/151 (68%), Gaps = 3/151 (1%) Query: 6 NKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVD 65 K L L+++RG ARLAAVQALYQ+DI+G E+I+EY+ YR D + S YL D Sbjct: 6 GKDSLILANKRGAARLAAVQALYQMDIVGIGVREVIAEYKAYRLGKDID---GSQYLDAD 62 Query: 66 LEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEV 125 +WFR I+ GV+ ++ +D ++ L+E+W+ SRLD L +ILRAG+ ELI VPV V Sbjct: 63 FQWFRSIVVGVVKDQKQLDPMLHQQLSEEWALSRLDSTLRAILRAGLWELINRKDVPVAV 122 Query: 126 IISEYVCIAHDFFYGDEPKFINAVLDKVSRK 156 I++EYV IA FF +EP+ +NAVLD ++++ Sbjct: 123 IMNEYVDIAKAFFESNEPRLVNAVLDSIAKE 153 >gi|209548794|ref|YP_002280711.1| transcription antitermination protein NusB [Rhizobium leguminosarum bv. trifolii WSM2304] gi|238055477|sp|B5ZXV2|NUSB_RHILW RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|209534550|gb|ACI54485.1| NusB antitermination factor [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 160 Score = 150 bits (379), Expect = 5e-35, Method: Compositional matrix adjust. Identities = 72/156 (46%), Positives = 104/156 (66%), Gaps = 3/156 (1%) Query: 1 MTIQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESV 60 M ++ +K +++RG ARLAAVQALYQ+D+ G EI++EYE +R ELD + Sbjct: 1 MNDDKTERPVKTANQRGAARLAAVQALYQMDVGGTGVLEIVAEYEAHRLG--QELD-GAT 57 Query: 61 YLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHS 120 YL D WFR I+ GV+ + +D LI++ L + W+ SRLD + +ILRAGV E+ + Sbjct: 58 YLKADAGWFRSIVSGVVRDQTRLDPLIAAALQDDWALSRLDSTVRAILRAGVFEITDRKD 117 Query: 121 VPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRK 156 VPV VI++EYV IA FF DEPK +NAVLD+++++ Sbjct: 118 VPVAVIVTEYVEIAQAFFDDDEPKLVNAVLDRIAKQ 153 >gi|241204015|ref|YP_002975111.1| transcription antitermination protein NusB [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240857905|gb|ACS55572.1| NusB antitermination factor [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 160 Score = 150 bits (379), Expect = 6e-35, Method: Compositional matrix adjust. Identities = 72/156 (46%), Positives = 105/156 (67%), Gaps = 3/156 (1%) Query: 1 MTIQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESV 60 M ++ +K +++RG ARLAAVQALYQ+D+ G EI++EYE +R ELD + Sbjct: 1 MNDDKTERPVKTANQRGAARLAAVQALYQMDVGGTGVLEIVAEYEAHRLG--QELD-GAT 57 Query: 61 YLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHS 120 YL D+ WFR I+ GV+ + +D LI++ L + W+ SRLD + +ILRAGV E+ + Sbjct: 58 YLKADVAWFRSIVSGVVRDQVRLDPLIAAALQDDWALSRLDSTVRAILRAGVFEITDRKD 117 Query: 121 VPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRK 156 VPV VI++EYV IA FF DEPK +NAVLD+++++ Sbjct: 118 VPVAVIVTEYVEIAQAFFDDDEPKLVNAVLDRIAKQ 153 >gi|116251399|ref|YP_767237.1| transcription antitermination protein NusB [Rhizobium leguminosarum bv. viciae 3841] gi|119390806|sp|Q1MIT2|NUSB_RHIL3 RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|115256047|emb|CAK07128.1| putative N utilization substance protein B [Rhizobium leguminosarum bv. viciae 3841] Length = 160 Score = 150 bits (378), Expect = 7e-35, Method: Compositional matrix adjust. Identities = 72/156 (46%), Positives = 105/156 (67%), Gaps = 3/156 (1%) Query: 1 MTIQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESV 60 M ++ +K +++RG ARLAAVQALYQ+D+ G EI++EYE +R E+D E+ Sbjct: 1 MNDDKTERPVKTANQRGAARLAAVQALYQMDVGGTGVLEIVAEYEAHRLG--QEIDGET- 57 Query: 61 YLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHS 120 YL D WFR I+ GV+ + +D LI++ L + W+ SRLD + +ILRAGV E+ + Sbjct: 58 YLKADAAWFRSIVSGVVRDQVRLDPLIAAALQDDWALSRLDSTVRAILRAGVFEITDRKD 117 Query: 121 VPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRK 156 VPV VI++EYV IA FF DEPK +NAVLD+++++ Sbjct: 118 VPVAVIVTEYVEIAQAFFDDDEPKLVNAVLDRIAKQ 153 >gi|218682018|ref|ZP_03529619.1| transcription antitermination protein NusB [Rhizobium etli CIAT 894] Length = 160 Score = 150 bits (378), Expect = 7e-35, Method: Compositional matrix adjust. Identities = 72/156 (46%), Positives = 104/156 (66%), Gaps = 3/156 (1%) Query: 1 MTIQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESV 60 M ++ +K +++RG ARLAAVQALYQ+D+ G EI++EYE +R ELD + Sbjct: 1 MNDDKTERPVKTANQRGAARLAAVQALYQMDVGGTGVLEIVAEYEAHRLG--QELD-GAT 57 Query: 61 YLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHS 120 YL D WFR I+ GV+ + +D LI++ L + W+ SRLD + +ILRAGV E+ + Sbjct: 58 YLKADAAWFRSIVSGVVRDQVRLDPLIAAALQDDWALSRLDSTVRAILRAGVFEITDRKD 117 Query: 121 VPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRK 156 VPV VI++EYV IA FF DEPK +NAVLD+++++ Sbjct: 118 VPVAVIVTEYVEIAQAFFEDDEPKLVNAVLDRIAKQ 153 >gi|121602835|ref|YP_988938.1| transcription antitermination protein NusB [Bartonella bacilliformis KC583] gi|120615012|gb|ABM45613.1| transcription antitermination factor NusB [Bartonella bacilliformis KC583] Length = 154 Score = 149 bits (376), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 74/145 (51%), Positives = 96/145 (66%), Gaps = 3/145 (2%) Query: 12 LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71 L ++RG ARLAAVQALYQ+DI+G E +EYE YR + + D YL D +WFR Sbjct: 10 LVNKRGAARLAAVQALYQMDIVGTGVMETAAEYEAYRLGKEIDGDQ---YLDADFQWFRA 66 Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131 II GV+ ++ +D ++ L+E+WS SRLD IL +ILRAG+ ELI VPV VII+EYV Sbjct: 67 IIAGVVRDQKKLDPMLHQQLSEEWSLSRLDSILRAILRAGLWELINRKEVPVAVIINEYV 126 Query: 132 CIAHDFFYGDEPKFINAVLDKVSRK 156 IA FF EPK +NAVLD ++ Sbjct: 127 DIAKAFFEDGEPKLVNAVLDNTAKN 151 >gi|49474164|ref|YP_032206.1| transcription antitermination protein NusB [Bartonella quintana str. Toulouse] gi|81647100|sp|Q6G004|NUSB_BARQU RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|49239668|emb|CAF26039.1| N utilization substance protein B [Bartonella quintana str. Toulouse] Length = 156 Score = 149 bits (375), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 70/146 (47%), Positives = 99/146 (67%), Gaps = 3/146 (2%) Query: 11 KLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFR 70 +L+++RG ARLAAVQALYQ+DI+G E +EYE Y + + + YL D +WF Sbjct: 11 RLANKRGAARLAAVQALYQMDIVGSGVMETAAEYEAYHLEKNID---GNQYLDADFQWFL 67 Query: 71 VIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEY 130 II GV+ ++ +D ++ L+ +WS SRLD IL +ILRAG+ ELI VP+ V+++EY Sbjct: 68 AIITGVVKDQKQLDPMLHQQLSAEWSLSRLDSILRAILRAGLWELINRQDVPIAVVMNEY 127 Query: 131 VCIAHDFFYGDEPKFINAVLDKVSRK 156 V IA FF GDEPK +NAVLD +++K Sbjct: 128 VDIAKAFFEGDEPKLVNAVLDSMAKK 153 >gi|86357164|ref|YP_469056.1| transcription antitermination protein NusB [Rhizobium etli CFN 42] gi|119390805|sp|Q2KA07|NUSB_RHIEC RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|86281266|gb|ABC90329.1| transcription antitermination protein B [Rhizobium etli CFN 42] Length = 160 Score = 148 bits (373), Expect = 3e-34, Method: Compositional matrix adjust. Identities = 72/156 (46%), Positives = 104/156 (66%), Gaps = 3/156 (1%) Query: 1 MTIQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESV 60 M ++ +K +++RG ARLAAVQALYQ+D+ G EI++EYE +R E+D + Sbjct: 1 MNDDKTERPVKTANQRGAARLAAVQALYQMDVGGTGVLEIVAEYEAHRLG--QEID-GAT 57 Query: 61 YLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHS 120 YL D WFR I+ GV+ + +D LI+ L + W+ SRLD + +ILRAGV EL++ Sbjct: 58 YLKADAGWFRSIVSGVVRDQVRLDPLIAVALQDDWALSRLDSTVRAILRAGVFELLDRKD 117 Query: 121 VPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRK 156 VPV VI++EYV IA FF DEPK +NAVLD+++++ Sbjct: 118 VPVAVIVTEYVEIARAFFDDDEPKLVNAVLDRIAKQ 153 >gi|153009852|ref|YP_001371067.1| transcription antitermination protein NusB [Ochrobactrum anthropi ATCC 49188] gi|166215706|sp|A6X1Y4|NUSB_OCHA4 RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|151561740|gb|ABS15238.1| NusB antitermination factor [Ochrobactrum anthropi ATCC 49188] Length = 168 Score = 147 bits (372), Expect = 3e-34, Method: Compositional matrix adjust. Identities = 68/144 (47%), Positives = 95/144 (65%), Gaps = 3/144 (2%) Query: 11 KLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFR 70 + +++RG+ARLAAVQALYQ+D+ G E+++EYE +R + + + YL D +WFR Sbjct: 15 RTANKRGVARLAAVQALYQMDVAGTGVLEVVAEYEAFRLGKEVD---GTQYLDADPQWFR 71 Query: 71 VIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEY 130 I+ GV+D + +D +I LTE W SRLD L +ILRAG EL VP VI+SEY Sbjct: 72 AIVAGVVDEQLKLDPMIHQALTEDWPLSRLDSTLRAILRAGAWELQTRKDVPTAVIVSEY 131 Query: 131 VCIAHDFFYGDEPKFINAVLDKVS 154 V IA F+ DEPK +NAVLD+++ Sbjct: 132 VDIAKAFYTEDEPKLVNAVLDRLA 155 >gi|239831595|ref|ZP_04679924.1| transcription antitermination factor NusB [Ochrobactrum intermedium LMG 3301] gi|239823862|gb|EEQ95430.1| transcription antitermination factor NusB [Ochrobactrum intermedium LMG 3301] Length = 168 Score = 147 bits (371), Expect = 5e-34, Method: Compositional matrix adjust. Identities = 67/144 (46%), Positives = 96/144 (66%), Gaps = 3/144 (2%) Query: 11 KLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFR 70 +++++RG+ARLAAVQALYQ+D+ G E+++EYE +R + + + YL D +WFR Sbjct: 15 RMANKRGVARLAAVQALYQMDVAGTGVLEVVAEYEAFRLGKEVD---GTQYLDADPQWFR 71 Query: 71 VIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEY 130 I+ GV+D + +D +I LTE W SRLD L +ILRAG EL VP VI+SEY Sbjct: 72 AIVAGVVDEQLKLDPMIHQALTEDWPLSRLDSTLRAILRAGAWELQTRKDVPTAVIVSEY 131 Query: 131 VCIAHDFFYGDEPKFINAVLDKVS 154 V IA F+ +EPK +NAVLD+++ Sbjct: 132 VDIAKAFYTEEEPKLVNAVLDRLA 155 >gi|319407319|emb|CBI80960.1| N utilization substance protein B [Bartonella sp. 1-1C] Length = 156 Score = 146 bits (368), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 69/147 (46%), Positives = 102/147 (69%), Gaps = 3/147 (2%) Query: 10 LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF 69 L+L+++RG ARLAAVQALYQ+D++G E+I+EY+ YR D + S YL D +WF Sbjct: 10 LRLANKRGAARLAAVQALYQMDMVGIGAMEVIAEYKAYRLGKDID---GSQYLDADFQWF 66 Query: 70 RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISE 129 II GV+ ++ +D ++ L+E+W+ SRLD L +ILRAG+ ELI VP+ VI++E Sbjct: 67 CSIIVGVVRDQKQLDPMLHKQLSEEWALSRLDSTLRAILRAGLWELINRKDVPIAVILNE 126 Query: 130 YVCIAHDFFYGDEPKFINAVLDKVSRK 156 Y+ IA FF DEP+ +NAVLD ++++ Sbjct: 127 YIDIAKAFFDNDEPRLVNAVLDSIAKE 153 >gi|254718887|ref|ZP_05180698.1| transcription antitermination protein NusB [Brucella sp. 83/13] gi|265983873|ref|ZP_06096608.1| conserved hypothetical protein [Brucella sp. 83/13] gi|306838197|ref|ZP_07471051.1| transcription antitermination factor NusB [Brucella sp. NF 2653] gi|264662465|gb|EEZ32726.1| conserved hypothetical protein [Brucella sp. 83/13] gi|306406706|gb|EFM62931.1| transcription antitermination factor NusB [Brucella sp. NF 2653] Length = 171 Score = 146 bits (368), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 67/144 (46%), Positives = 95/144 (65%), Gaps = 3/144 (2%) Query: 11 KLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFR 70 + +++RG+ARLAAVQALYQ+D+ G E+++EYE +R + + + YL D +WFR Sbjct: 15 RTANKRGVARLAAVQALYQMDVAGTGVMEVVAEYEAFRLGKEVD---GTQYLDADPQWFR 71 Query: 71 VIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEY 130 I+ GV++ + +D +I LTE W SRLD L +ILRAG EL VP VI+SEY Sbjct: 72 AIVAGVVEDQLKLDPMIHQALTEGWPLSRLDSTLRAILRAGAWELKARKDVPTAVIVSEY 131 Query: 131 VCIAHDFFYGDEPKFINAVLDKVS 154 V IA F+ DEPK +NAVLD+++ Sbjct: 132 VDIAKAFYTEDEPKLVNAVLDRLA 155 >gi|306843714|ref|ZP_07476314.1| transcription antitermination factor NusB [Brucella sp. BO1] gi|306276024|gb|EFM57733.1| transcription antitermination factor NusB [Brucella sp. BO1] Length = 171 Score = 145 bits (367), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 67/144 (46%), Positives = 95/144 (65%), Gaps = 3/144 (2%) Query: 11 KLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFR 70 + +++RG+ARLAAVQALYQ+D+ G E+++EYE +R + + + YL D +WFR Sbjct: 15 RTANKRGVARLAAVQALYQMDVAGTGVMEVVAEYEAFRLGKEVD---GTQYLDADPQWFR 71 Query: 71 VIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEY 130 I+ GV++ + +D +I LTE W SRLD L +ILRAG EL VP VI+SEY Sbjct: 72 AIVAGVVEDQLKLDPMIHQALTEDWPLSRLDSTLRAILRAGAWELKARKDVPTAVIVSEY 131 Query: 131 VCIAHDFFYGDEPKFINAVLDKVS 154 V IA F+ DEPK +NAVLD+++ Sbjct: 132 VDIAKAFYTEDEPKLVNAVLDRLA 155 >gi|23501657|ref|NP_697784.1| transcription antitermination protein NusB [Brucella suis 1330] gi|148560649|ref|YP_001258749.1| transcription antitermination protein NusB [Brucella ovis ATCC 25840] gi|161618737|ref|YP_001592624.1| transcription antitermination protein NusB [Brucella canis ATCC 23365] gi|225627268|ref|ZP_03785305.1| transcription antitermination factor NusB [Brucella ceti str. Cudo] gi|254701543|ref|ZP_05163371.1| transcription antitermination protein NusB [Brucella suis bv. 5 str. 513] gi|254704092|ref|ZP_05165920.1| transcription antitermination protein NusB [Brucella suis bv. 3 str. 686] gi|254707007|ref|ZP_05168835.1| transcription antitermination protein NusB [Brucella pinnipedialis M163/99/10] gi|254709884|ref|ZP_05171695.1| transcription antitermination protein NusB [Brucella pinnipedialis B2/94] gi|254713885|ref|ZP_05175696.1| transcription antitermination protein NusB [Brucella ceti M644/93/1] gi|254717058|ref|ZP_05178869.1| transcription antitermination protein NusB [Brucella ceti M13/05/1] gi|256031377|ref|ZP_05444991.1| transcription antitermination protein NusB [Brucella pinnipedialis M292/94/1] gi|256060886|ref|ZP_05451046.1| transcription antitermination protein NusB [Brucella neotomae 5K33] gi|256159498|ref|ZP_05457266.1| transcription antitermination protein NusB [Brucella ceti M490/95/1] gi|256254784|ref|ZP_05460320.1| transcription antitermination protein NusB [Brucella ceti B1/94] gi|256369202|ref|YP_003106710.1| transcription antitermination protein NusB [Brucella microti CCM 4915] gi|260168510|ref|ZP_05755321.1| transcription antitermination protein NusB [Brucella sp. F5/99] gi|260566660|ref|ZP_05837130.1| antitermination protein NusB [Brucella suis bv. 4 str. 40] gi|261218868|ref|ZP_05933149.1| conserved hypothetical protein [Brucella ceti M13/05/1] gi|261221964|ref|ZP_05936245.1| conserved hypothetical protein [Brucella ceti B1/94] gi|261314474|ref|ZP_05953671.1| conserved hypothetical protein [Brucella pinnipedialis M163/99/10] gi|261317426|ref|ZP_05956623.1| conserved hypothetical protein [Brucella pinnipedialis B2/94] gi|261321633|ref|ZP_05960830.1| conserved hypothetical protein [Brucella ceti M644/93/1] gi|261324884|ref|ZP_05964081.1| conserved hypothetical protein [Brucella neotomae 5K33] gi|261752093|ref|ZP_05995802.1| transcription antitermination protein NusB [Brucella suis bv. 5 str. 513] gi|261754752|ref|ZP_05998461.1| conserved hypothetical protein [Brucella suis bv. 3 str. 686] gi|261757980|ref|ZP_06001689.1| antitermination protein NusB [Brucella sp. F5/99] gi|265988463|ref|ZP_06101020.1| conserved hypothetical protein [Brucella pinnipedialis M292/94/1] gi|265997927|ref|ZP_06110484.1| conserved hypothetical protein [Brucella ceti M490/95/1] gi|294852131|ref|ZP_06792804.1| transcription antitermination factor NusB [Brucella sp. NVSL 07-0026] gi|32171662|sp|Q8G1E7|NUSB_BRUSU RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|166215665|sp|A5VPV2|NUSB_BRUO2 RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|189035880|sp|A9MAF0|NUSB_BRUC2 RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|23347577|gb|AAN29699.1| N utilization substance protein B [Brucella suis 1330] gi|148371906|gb|ABQ61885.1| transcription antitermination factor NusB [Brucella ovis ATCC 25840] gi|161335548|gb|ABX61853.1| transcription antitermination factor NusB [Brucella canis ATCC 23365] gi|225617273|gb|EEH14318.1| transcription antitermination factor NusB [Brucella ceti str. Cudo] gi|255999362|gb|ACU47761.1| transcription antitermination protein NusB [Brucella microti CCM 4915] gi|260156178|gb|EEW91258.1| antitermination protein NusB [Brucella suis bv. 4 str. 40] gi|260920548|gb|EEX87201.1| conserved hypothetical protein [Brucella ceti B1/94] gi|260923957|gb|EEX90525.1| conserved hypothetical protein [Brucella ceti M13/05/1] gi|261294323|gb|EEX97819.1| conserved hypothetical protein [Brucella ceti M644/93/1] gi|261296649|gb|EEY00146.1| conserved hypothetical protein [Brucella pinnipedialis B2/94] gi|261300864|gb|EEY04361.1| conserved hypothetical protein [Brucella neotomae 5K33] gi|261303500|gb|EEY06997.1| conserved hypothetical protein [Brucella pinnipedialis M163/99/10] gi|261737964|gb|EEY25960.1| antitermination protein NusB [Brucella sp. F5/99] gi|261741846|gb|EEY29772.1| transcription antitermination protein NusB [Brucella suis bv. 5 str. 513] gi|261744505|gb|EEY32431.1| conserved hypothetical protein [Brucella suis bv. 3 str. 686] gi|262552395|gb|EEZ08385.1| conserved hypothetical protein [Brucella ceti M490/95/1] gi|264660660|gb|EEZ30921.1| conserved hypothetical protein [Brucella pinnipedialis M292/94/1] gi|294820720|gb|EFG37719.1| transcription antitermination factor NusB [Brucella sp. NVSL 07-0026] Length = 171 Score = 145 bits (367), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 67/144 (46%), Positives = 95/144 (65%), Gaps = 3/144 (2%) Query: 11 KLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFR 70 + +++RG+ARLAAVQALYQ+D+ G E+++EYE +R + + + YL D +WFR Sbjct: 15 RTANKRGVARLAAVQALYQMDVAGTGVMEVVAEYEAFRLGKEVD---GTQYLDADPQWFR 71 Query: 71 VIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEY 130 I+ GV++ + +D +I LTE W SRLD L +ILRAG EL VP VI+SEY Sbjct: 72 AIVAGVVEDQLKLDPMIHQALTEDWPLSRLDSTLRAILRAGAWELKARKDVPTAVIVSEY 131 Query: 131 VCIAHDFFYGDEPKFINAVLDKVS 154 V IA F+ DEPK +NAVLD+++ Sbjct: 132 VDIAKAFYTEDEPKLVNAVLDRLA 155 >gi|304391939|ref|ZP_07373881.1| transcription antitermination factor NusB [Ahrensia sp. R2A130] gi|303296168|gb|EFL90526.1| transcription antitermination factor NusB [Ahrensia sp. R2A130] Length = 186 Score = 145 bits (365), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 69/147 (46%), Positives = 97/147 (65%), Gaps = 3/147 (2%) Query: 10 LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF 69 +K +++RG ARL+AVQALYQ+DI G TE+++EYE +R E+D E+ YL D WF Sbjct: 8 MKPANKRGSARLSAVQALYQMDIGGAGLTEVVAEYENFRLG--HEIDGET-YLDADPSWF 64 Query: 70 RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISE 129 R I+ GV+ ++ ID +I LT+ W SR+D L ++LRA V ELI V V++SE Sbjct: 65 RGIVGGVVRDQKKIDPVIHDALTKDWPLSRIDSTLRAVLRAAVFELINRPDVSARVVVSE 124 Query: 130 YVCIAHDFFYGDEPKFINAVLDKVSRK 156 Y+ + FF DEPK +N VLDKV+R+ Sbjct: 125 YIEVTKAFFESDEPKMVNGVLDKVARQ 151 >gi|114704829|ref|ZP_01437737.1| transcription antitermination protein NusB [Fulvimarina pelagi HTCC2506] gi|114539614|gb|EAU42734.1| transcription antitermination protein NusB [Fulvimarina pelagi HTCC2506] Length = 163 Score = 144 bits (364), Expect = 3e-33, Method: Compositional matrix adjust. Identities = 72/153 (47%), Positives = 103/153 (67%), Gaps = 3/153 (1%) Query: 4 QDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLH 63 + ++ + +++RG+ARLAAVQALYQ+DI G E ++EYET+R E+D E+ Y Sbjct: 3 ETKQRSFRPANKRGVARLAAVQALYQMDIGGTPLVETVAEYETHRMG--HEIDGET-YRV 59 Query: 64 VDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPV 123 D WFR I+ GV+ R++ ID +I + L W SRLD L +ILRAGV E+ + VPV Sbjct: 60 ADAAWFRDIVSGVVRRQKAIDPIIHANLPPGWPLSRLDSTLRAILRAGVYEIETRNDVPV 119 Query: 124 EVIISEYVCIAHDFFYGDEPKFINAVLDKVSRK 156 VI+SEYV +A FF +EPK +NA+LD+V+R+ Sbjct: 120 AVIVSEYVDVAKAFFEEEEPKLVNALLDRVARE 152 >gi|163843041|ref|YP_001627445.1| transcription antitermination protein NusB [Brucella suis ATCC 23445] gi|189035881|sp|B0CL95|NUSB_BRUSI RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|163673764|gb|ABY37875.1| transcription antitermination factor NusB [Brucella suis ATCC 23445] Length = 171 Score = 144 bits (364), Expect = 3e-33, Method: Compositional matrix adjust. Identities = 66/144 (45%), Positives = 94/144 (65%), Gaps = 3/144 (2%) Query: 11 KLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFR 70 + +++RG+ARLAA QALYQ+D+ G E+++EYE +R + + + YL D +WFR Sbjct: 15 RTANKRGVARLAAAQALYQMDVAGTGVMEVVAEYEAFRLGKEVD---GTQYLDADPQWFR 71 Query: 71 VIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEY 130 I+ GV++ + +D +I LTE W SRLD L +ILRAG EL VP VI+SEY Sbjct: 72 AIVAGVVEDQLKLDPMIHQALTEDWPLSRLDSTLRAILRAGAWELKARKDVPTAVIVSEY 131 Query: 131 VCIAHDFFYGDEPKFINAVLDKVS 154 V IA F+ DEPK +NAVLD+++ Sbjct: 132 VDIAKAFYTEDEPKLVNAVLDRLA 155 >gi|17987469|ref|NP_540103.1| transcription antitermination protein NusB [Brucella melitensis bv. 1 str. 16M] gi|256044456|ref|ZP_05447360.1| transcription antitermination protein NusB [Brucella melitensis bv. 1 str. Rev.1] gi|260563807|ref|ZP_05834293.1| antitermination protein NusB [Brucella melitensis bv. 1 str. 16M] gi|265990877|ref|ZP_06103434.1| conserved hypothetical protein [Brucella melitensis bv. 1 str. Rev.1] gi|22095950|sp|Q8YGH3|NUSB_BRUME RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|17983165|gb|AAL52367.1| n utilization substance protein b [Brucella melitensis bv. 1 str. 16M] gi|260153823|gb|EEW88915.1| antitermination protein NusB [Brucella melitensis bv. 1 str. 16M] gi|263001661|gb|EEZ14236.1| conserved hypothetical protein [Brucella melitensis bv. 1 str. Rev.1] Length = 171 Score = 144 bits (363), Expect = 4e-33, Method: Compositional matrix adjust. Identities = 66/144 (45%), Positives = 95/144 (65%), Gaps = 3/144 (2%) Query: 11 KLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFR 70 + +++RG+ARLAAVQAL+Q+D+ G E+++EYE +R + + + YL D +WFR Sbjct: 15 RTANKRGVARLAAVQALFQMDVAGTGVMEVVAEYEAFRLGKEVD---GTQYLDADPQWFR 71 Query: 71 VIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEY 130 I+ GV++ + +D +I LTE W SRLD L +ILRAG EL VP VI+SEY Sbjct: 72 AIVAGVVEDQLKLDPMIHQALTEDWPLSRLDSTLRAILRAGAWELKARKDVPTAVIVSEY 131 Query: 131 VCIAHDFFYGDEPKFINAVLDKVS 154 V IA F+ DEPK +NAVLD+++ Sbjct: 132 VDIAKAFYTEDEPKLVNAVLDRLA 155 >gi|62289722|ref|YP_221515.1| transcription antitermination protein NusB [Brucella abortus bv. 1 str. 9-941] gi|82699651|ref|YP_414225.1| transcription antitermination protein NusB [Brucella melitensis biovar Abortus 2308] gi|189023971|ref|YP_001934739.1| transcription antitermination protein NusB [Brucella abortus S19] gi|225852286|ref|YP_002732519.1| transcription antitermination protein NusB [Brucella melitensis ATCC 23457] gi|237815210|ref|ZP_04594208.1| transcription antitermination factor NusB [Brucella abortus str. 2308 A] gi|254689031|ref|ZP_05152285.1| transcription antitermination protein NusB [Brucella abortus bv. 6 str. 870] gi|254693514|ref|ZP_05155342.1| transcription antitermination protein NusB [Brucella abortus bv. 3 str. Tulya] gi|254697166|ref|ZP_05158994.1| transcription antitermination protein NusB [Brucella abortus bv. 2 str. 86/8/59] gi|254730062|ref|ZP_05188640.1| transcription antitermination protein NusB [Brucella abortus bv. 4 str. 292] gi|256113300|ref|ZP_05454168.1| transcription antitermination protein NusB [Brucella melitensis bv. 3 str. Ether] gi|256257281|ref|ZP_05462817.1| transcription antitermination protein NusB [Brucella abortus bv. 9 str. C68] gi|256264209|ref|ZP_05466741.1| antitermination protein NusB [Brucella melitensis bv. 2 str. 63/9] gi|260545525|ref|ZP_05821266.1| antitermination protein NusB [Brucella abortus NCTC 8038] gi|260754526|ref|ZP_05866874.1| transcription antitermination protein NusB [Brucella abortus bv. 6 str. 870] gi|260757747|ref|ZP_05870095.1| transcription antitermination protein NusB [Brucella abortus bv. 4 str. 292] gi|260761572|ref|ZP_05873915.1| transcription antitermination protein NusB [Brucella abortus bv. 2 str. 86/8/59] gi|260883554|ref|ZP_05895168.1| conserved hypothetical protein [Brucella abortus bv. 9 str. C68] gi|261213774|ref|ZP_05928055.1| transcription antitermination protein NusB [Brucella abortus bv. 3 str. Tulya] gi|265994713|ref|ZP_06107270.1| conserved hypothetical protein [Brucella melitensis bv. 3 str. Ether] gi|297248127|ref|ZP_06931845.1| transcription antitermination factor NusB [Brucella abortus bv. 5 str. B3196] gi|75496998|sp|Q57DY0|NUSB_BRUAB RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|119372280|sp|Q2YNC5|NUSB_BRUA2 RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|238689358|sp|B2S518|NUSB_BRUA1 RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|254772617|sp|C0RIA7|NUSB_BRUMB RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|62195854|gb|AAX74154.1| NusB, N utilization substance protein B [Brucella abortus bv. 1 str. 9-941] gi|82615752|emb|CAJ10748.1| Antitermination protein NusB [Brucella melitensis biovar Abortus 2308] gi|189019543|gb|ACD72265.1| Antitermination protein NusB [Brucella abortus S19] gi|225640651|gb|ACO00565.1| transcription antitermination factor NusB [Brucella melitensis ATCC 23457] gi|237790047|gb|EEP64257.1| transcription antitermination factor NusB [Brucella abortus str. 2308 A] gi|260096932|gb|EEW80807.1| antitermination protein NusB [Brucella abortus NCTC 8038] gi|260668065|gb|EEX55005.1| transcription antitermination protein NusB [Brucella abortus bv. 4 str. 292] gi|260672004|gb|EEX58825.1| transcription antitermination protein NusB [Brucella abortus bv. 2 str. 86/8/59] gi|260674634|gb|EEX61455.1| transcription antitermination protein NusB [Brucella abortus bv. 6 str. 870] gi|260873082|gb|EEX80151.1| conserved hypothetical protein [Brucella abortus bv. 9 str. C68] gi|260915381|gb|EEX82242.1| transcription antitermination protein NusB [Brucella abortus bv. 3 str. Tulya] gi|262765826|gb|EEZ11615.1| conserved hypothetical protein [Brucella melitensis bv. 3 str. Ether] gi|263094453|gb|EEZ18275.1| antitermination protein NusB [Brucella melitensis bv. 2 str. 63/9] gi|297175296|gb|EFH34643.1| transcription antitermination factor NusB [Brucella abortus bv. 5 str. B3196] gi|326408790|gb|ADZ65855.1| Antitermination protein NusB [Brucella melitensis M28] gi|326538508|gb|ADZ86723.1| transcription antitermination factor NusB [Brucella melitensis M5-90] Length = 171 Score = 144 bits (363), Expect = 4e-33, Method: Compositional matrix adjust. Identities = 66/144 (45%), Positives = 95/144 (65%), Gaps = 3/144 (2%) Query: 11 KLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFR 70 + +++RG+ARLAAVQAL+Q+D+ G E+++EYE +R + + + YL D +WFR Sbjct: 15 RTANKRGVARLAAVQALFQMDVAGTGVMEVVAEYEAFRLGKEVD---GTQYLDADPQWFR 71 Query: 71 VIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEY 130 I+ GV++ + +D +I LTE W SRLD L +ILRAG EL VP VI+SEY Sbjct: 72 AIVAGVVEDQLKLDPMIHQALTEDWPLSRLDSTLRAILRAGAWELKARKDVPTAVIVSEY 131 Query: 131 VCIAHDFFYGDEPKFINAVLDKVS 154 V IA F+ DEPK +NAVLD+++ Sbjct: 132 VDIAKAFYTEDEPKLVNAVLDRLA 155 >gi|90419413|ref|ZP_01227323.1| putative transcription termination protein NusB [Aurantimonas manganoxydans SI85-9A1] gi|90336350|gb|EAS50091.1| putative transcription termination protein NusB [Aurantimonas manganoxydans SI85-9A1] Length = 177 Score = 144 bits (362), Expect = 6e-33, Method: Compositional matrix adjust. Identities = 70/164 (42%), Positives = 103/164 (62%), Gaps = 4/164 (2%) Query: 1 MTIQDNK-KDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVES 59 M+ D + + +K +++RG ARLAAVQALYQ+++ G + E ++EYE +R +E+D E+ Sbjct: 1 MSSSDPQARPVKQANKRGAARLAAVQALYQMEVGGTALLETVAEYENFRLG--SEIDGET 58 Query: 60 VYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECH 119 Y D WFR ++ GV+ + ID I + L W SR+D L +ILRAG EL Sbjct: 59 -YREADAGWFRDVVSGVVRSQTEIDPKIHASLPTDWPLSRIDTTLRAILRAGTYELSNRK 117 Query: 120 SVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRSG 163 VPV VI+SEY+ +A F+ GDEP +NAVLD+V+R ++ G Sbjct: 118 DVPVAVIVSEYIDVAKAFYTGDEPGLVNAVLDRVARSVRAEKPG 161 >gi|118587988|ref|ZP_01545398.1| transcription antitermination protein NusB [Stappia aggregata IAM 12614] gi|118439610|gb|EAV46241.1| transcription antitermination protein NusB [Stappia aggregata IAM 12614] Length = 173 Score = 134 bits (337), Expect = 4e-30, Method: Compositional matrix adjust. Identities = 62/147 (42%), Positives = 96/147 (65%), Gaps = 3/147 (2%) Query: 8 KDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLE 67 K ++ +++RG+ARLAAVQALYQ+D+ G T ++SE+ +R E+D E Y D + Sbjct: 13 KTVRPANKRGVARLAAVQALYQMDVGGAPLTSVVSEFTAFRLG--KEIDGEQ-YREADEQ 69 Query: 68 WFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVII 127 WF+ I+ GV++ ++ +D I + L E W R+D +L +ILR+G EL+ VP +VII Sbjct: 70 WFKQILAGVVEDQKFLDPYIHTALAEDWPLKRIDSLLRAILRSGSYELLRRKDVPAKVII 129 Query: 128 SEYVCIAHDFFYGDEPKFINAVLDKVS 154 SEY+ +A FF DEP +N VLD+++ Sbjct: 130 SEYIDVAKAFFEDDEPGLVNGVLDRLA 156 >gi|307945261|ref|ZP_07660597.1| transcription antitermination factor NusB [Roseibium sp. TrichSKD4] gi|307771134|gb|EFO30359.1| transcription antitermination factor NusB [Roseibium sp. TrichSKD4] Length = 173 Score = 134 bits (336), Expect = 5e-30, Method: Compositional matrix adjust. Identities = 65/155 (41%), Positives = 99/155 (63%), Gaps = 6/155 (3%) Query: 8 KDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLE 67 K ++ +++RG+ARLAAVQALYQ+D+ + +ISE+ +R ELD E YL D + Sbjct: 13 KAVRPANKRGVARLAAVQALYQMDVGEVPLSSVISEFTAFRLG--KELDGEQ-YLDADEQ 69 Query: 68 WFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVII 127 WF+ I++GV + ++ +D I LTE W R+D +L +ILR+G EL+ VP +VII Sbjct: 70 WFKSIVNGVFEDQKFLDPFIHKALTEGWPLKRVDSLLRAILRSGSFELLRRKDVPPKVII 129 Query: 128 SEYVCIAHDFFYGDEPKFINAVLDKVS---RKEEI 159 SEY+ + F+ DEP +N VLD+++ R EE+ Sbjct: 130 SEYIDVTKAFYEADEPGLVNGVLDRLAHELRNEEL 164 >gi|254502610|ref|ZP_05114761.1| transcription antitermination factor NusB [Labrenzia alexandrii DFL-11] gi|222438681|gb|EEE45360.1| transcription antitermination factor NusB [Labrenzia alexandrii DFL-11] Length = 177 Score = 134 bits (336), Expect = 6e-30, Method: Compositional matrix adjust. Identities = 64/144 (44%), Positives = 93/144 (64%), Gaps = 3/144 (2%) Query: 11 KLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFR 70 + +++RG+ARLAAVQALYQ+DI G T ++SEY +R E+D E Y D +WF+ Sbjct: 20 RPANKRGVARLAAVQALYQMDIGGAPLTNVVSEYTAFRLG--KEIDGEQ-YRDADEQWFK 76 Query: 71 VIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEY 130 I+ GV+ ++ +D I + L E W R+D +L +ILRAG EL+ VP +VIISEY Sbjct: 77 HILAGVVADQKFLDPYIHTALKEDWPLKRIDSLLRAILRAGGYELLRRRDVPAKVIISEY 136 Query: 131 VCIAHDFFYGDEPKFINAVLDKVS 154 + +A FF DEP +N VLD+++ Sbjct: 137 IDVAKAFFEDDEPGLVNGVLDRLA 160 >gi|328543540|ref|YP_004303649.1| transcription antitermination protein NusB [polymorphum gilvum SL003B-26A1] gi|326413284|gb|ADZ70347.1| transcription antitermination protein NusB [Polymorphum gilvum SL003B-26A1] Length = 171 Score = 133 bits (335), Expect = 8e-30, Method: Compositional matrix adjust. Identities = 61/150 (40%), Positives = 96/150 (64%), Gaps = 3/150 (2%) Query: 5 DNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHV 64 + +D + +++RG ARL AVQALYQ+DI G S T++++E+ +R ELD + Y Sbjct: 8 EGGRDARPANKRGAARLGAVQALYQMDIGGASLTDVVNEFTAFRLG--KELD-GAQYREA 64 Query: 65 DLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVE 124 D WF+ ++ GV++ ++ +D I + L E W R+D +L +ILRAG EL+ VP Sbjct: 65 DELWFKDVVKGVVEEQRKLDPFIHTALVEDWPLRRIDSLLRAILRAGAYELLRRRDVPAR 124 Query: 125 VIISEYVCIAHDFFYGDEPKFINAVLDKVS 154 VIISEY+ +A F+ DEP+ +N VLD+++ Sbjct: 125 VIISEYIDVAKAFYAEDEPRLVNGVLDRLA 154 >gi|110633492|ref|YP_673700.1| transcription antitermination protein NusB [Mesorhizobium sp. BNC1] gi|119390783|sp|Q11J90|NUSB_MESSB RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|110284476|gb|ABG62535.1| NusB antitermination factor [Chelativorans sp. BNC1] Length = 167 Score = 133 bits (334), Expect = 9e-30, Method: Compositional matrix adjust. Identities = 71/151 (47%), Positives = 100/151 (66%), Gaps = 6/151 (3%) Query: 8 KDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLE 67 ++ + +++RG ARLAAVQALYQ+D+ G E +EYE +R + + D+ Y D + Sbjct: 10 ENFRPANKRGAARLAAVQALYQMDVAGTGLLETTAEYEAFRLGKEIDGDL---YREADAQ 66 Query: 68 WFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVII 127 WFR I+ GV++ + ID +I LTE W SRLD L +ILRAGV EL + VPV V++ Sbjct: 67 WFRAILSGVIENQTFIDPVIRQSLTEDWPLSRLDSTLRAILRAGVYELSKRSDVPVPVVV 126 Query: 128 SEYVCIAHDFFYG--DEPKFINAVLDKVSRK 156 SEY+ IA FYG +EPK +NAVLD+V+R+ Sbjct: 127 SEYIDIAK-AFYGEEEEPKLVNAVLDRVARR 156 >gi|254469407|ref|ZP_05082812.1| transcription antitermination factor NusB [Pseudovibrio sp. JE062] gi|211961242|gb|EEA96437.1| transcription antitermination factor NusB [Pseudovibrio sp. JE062] Length = 163 Score = 132 bits (333), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 61/158 (38%), Positives = 100/158 (63%), Gaps = 5/158 (3%) Query: 1 MTIQDNKKD--LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVE 58 MT ++NKK+ ++ +++RG+ARLAAVQA+YQ++I G ++++EYE YR E+D E Sbjct: 1 MTTENNKKNAEVRPANKRGVARLAAVQAVYQMEITGARLNDVLNEYEAYRLG--QEVDGE 58 Query: 59 SVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIEC 118 Y D WFR ++ V + + ID I + L+E W R+D L +ILR G E + Sbjct: 59 Q-YRDADPAWFRDLVQAVFEDQLRIDPRIHTALSEDWPLKRIDTTLRAILRVGCAEFLRK 117 Query: 119 HSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRK 156 VP VII+EY+ +A F+ GDE + +N ++++++R+ Sbjct: 118 KDVPARVIINEYIDVAKSFYEGDEARLVNGIMNRLARE 155 >gi|192291385|ref|YP_001991990.1| transcription antitermination protein NusB [Rhodopseudomonas palustris TIE-1] gi|238692600|sp|B3QJK9|NUSB_RHOPT RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|192285134|gb|ACF01515.1| NusB antitermination factor [Rhodopseudomonas palustris TIE-1] Length = 174 Score = 127 bits (318), Expect = 8e-28, Method: Compositional matrix adjust. Identities = 65/156 (41%), Positives = 95/156 (60%), Gaps = 7/156 (4%) Query: 1 MTIQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESV 60 MT + +K ++RRG ARLAAVQALYQ+DI G E +E+E+ F E++ E Sbjct: 17 MTPKGERK----ANRRGAARLAAVQALYQMDIGGAGINETFAEFES--FWIGNEVEGEQ- 69 Query: 61 YLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHS 120 YL + +FR I+ GV+ ++ ID LI L W +R+D IL +++RAG EL Sbjct: 70 YLPAEAAFFRDIVAGVVREQKQIDPLIDDLLARGWPLARIDAILRAVMRAGAYELEHRKD 129 Query: 121 VPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRK 156 +P V++SEYV +AH F DE +NAVLD+++R+ Sbjct: 130 IPARVVVSEYVDVAHAFVEKDETGMVNAVLDQIARR 165 >gi|316934108|ref|YP_004109090.1| NusB antitermination factor [Rhodopseudomonas palustris DX-1] gi|315601822|gb|ADU44357.1| NusB antitermination factor [Rhodopseudomonas palustris DX-1] Length = 173 Score = 126 bits (317), Expect = 8e-28, Method: Compositional matrix adjust. Identities = 65/156 (41%), Positives = 96/156 (61%), Gaps = 7/156 (4%) Query: 1 MTIQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESV 60 MT + +K ++RRG ARLAAVQALYQ+DI G E +E+E+ F E++ E Sbjct: 17 MTPKGERK----ANRRGAARLAAVQALYQMDIGGAGINETFAEFES--FWIGNEVEGEQ- 69 Query: 61 YLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHS 120 YL + +FR I+ GV+ ++ ID LI L + W +R+D IL +++RAG EL Sbjct: 70 YLPAEAAFFRDIVSGVVREQKQIDPLIDDLLAKGWPLARIDAILRAVMRAGAYELEHRKD 129 Query: 121 VPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRK 156 +P V++SEYV +AH F DE +NAVLD+++R+ Sbjct: 130 IPARVVVSEYVDVAHAFVEKDETGMVNAVLDQIARQ 165 >gi|39935796|ref|NP_948072.1| transcription antitermination protein NusB [Rhodopseudomonas palustris CGA009] gi|81562525|sp|Q6N688|NUSB_RHOPA RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|39649649|emb|CAE28171.1| antitermination factor, NusB [Rhodopseudomonas palustris CGA009] Length = 174 Score = 126 bits (317), Expect = 8e-28, Method: Compositional matrix adjust. Identities = 68/165 (41%), Positives = 99/165 (60%), Gaps = 10/165 (6%) Query: 1 MTIQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESV 60 MT + +K ++RRG ARLAAVQALYQ+DI G E +E+E+ F E++ E Sbjct: 17 MTPKGERK----ANRRGAARLAAVQALYQMDIGGAGINETFAEFES--FWIGNEVEGEQ- 69 Query: 61 YLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHS 120 YL + +FR I+ GV+ ++ ID LI L W +R+D IL +++RAG EL Sbjct: 70 YLPAEAAFFRDIVAGVVREQKQIDPLIDDLLARGWPLARIDAILRAVMRAGAYELEHRKD 129 Query: 121 VPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRK---EEIKRS 162 +P V++SEYV +AH F DE +NAVLD+++R+ +E RS Sbjct: 130 IPARVVVSEYVDVAHAFVEKDETGMVNAVLDQIARRFREDEFTRS 174 >gi|209884998|ref|YP_002288855.1| transcription antitermination factor NusB [Oligotropha carboxidovorans OM5] gi|209873194|gb|ACI92990.1| transcription antitermination factor NusB [Oligotropha carboxidovorans OM5] Length = 156 Score = 125 bits (313), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 61/144 (42%), Positives = 88/144 (61%), Gaps = 3/144 (2%) Query: 13 SHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVI 72 ++RRG ARLAAVQALYQ+DI G +I +E+E++ + E D YL + +FR I Sbjct: 9 ANRRGAARLAAVQALYQMDIAGAGINDIFAEFESHWLGNEVEGDE---YLPAEAAFFRDI 65 Query: 73 IHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVC 132 + GV+ + ID ++ L+ W R++ IL + LRAG EL VP V+I EYV Sbjct: 66 VSGVVRDQGRIDPMLDEALSRGWPLKRIEAILRATLRAGAYELGHRKDVPARVVIKEYVD 125 Query: 133 IAHDFFYGDEPKFINAVLDKVSRK 156 +AH FF DE +NAVLD+++R+ Sbjct: 126 VAHAFFEADEAGMVNAVLDQIARQ 149 >gi|86749756|ref|YP_486252.1| transcription antitermination protein NusB [Rhodopseudomonas palustris HaA2] gi|119390808|sp|Q2IWR9|NUSB_RHOP2 RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|86572784|gb|ABD07341.1| NusB antitermination factor [Rhodopseudomonas palustris HaA2] Length = 169 Score = 124 bits (312), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 62/150 (41%), Positives = 93/150 (62%), Gaps = 4/150 (2%) Query: 7 KKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDL 66 K D K ++RRG ARLAAVQALYQ+DI G E +E+E++ + E D YL + Sbjct: 15 KGDRK-ANRRGAARLAAVQALYQMDIGGAGINETFAEFESHWIGNEVEGDQ---YLPAEA 70 Query: 67 EWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVI 126 +FR ++ GV+ ++ +D LI L + W +R+D IL +++RAG EL +P V+ Sbjct: 71 AFFRDVVSGVVRDQKKLDPLIDDALAKGWPLARIDAILRAVMRAGAYELEHRKDIPARVV 130 Query: 127 ISEYVCIAHDFFYGDEPKFINAVLDKVSRK 156 +SEYV +AH F DE +NAVLD+++R+ Sbjct: 131 VSEYVDVAHAFVEKDETGMVNAVLDQIARQ 160 >gi|90424163|ref|YP_532533.1| transcription antitermination protein NusB [Rhodopseudomonas palustris BisB18] gi|119390809|sp|Q214H2|NUSB_RHOPB RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|90106177|gb|ABD88214.1| NusB antitermination factor [Rhodopseudomonas palustris BisB18] Length = 169 Score = 124 bits (310), Expect = 6e-27, Method: Compositional matrix adjust. Identities = 62/155 (40%), Positives = 96/155 (61%), Gaps = 6/155 (3%) Query: 5 DNK---KDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVY 61 DNK K K ++RRG ARLAAVQALYQ+D+ G +I +E+E++ + E D Y Sbjct: 9 DNKPAPKGEKKANRRGAARLAAVQALYQMDVGGAGLNDIFAEFESHWLGNEVEGDQ---Y 65 Query: 62 LHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSV 121 L + +F+ ++ GV+ + +D LI L + W +R+D IL +++RAG EL V Sbjct: 66 LPAEQAFFQDVVSGVVRDQAKLDPLIDVALAKGWPLARIDAILRAVMRAGAYELEHRKDV 125 Query: 122 PVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRK 156 P V++SEYV +A+ F G+E +NAVLD+++R+ Sbjct: 126 PARVVVSEYVDVANAFVEGEETGMVNAVLDQIARQ 160 >gi|299135081|ref|ZP_07028272.1| NusB antitermination factor [Afipia sp. 1NLS2] gi|298590058|gb|EFI50262.1| NusB antitermination factor [Afipia sp. 1NLS2] Length = 166 Score = 123 bits (309), Expect = 9e-27, Method: Compositional matrix adjust. Identities = 60/144 (41%), Positives = 87/144 (60%), Gaps = 3/144 (2%) Query: 13 SHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVI 72 ++RRG ARLAAVQALYQ+DI G +I +E+E++ + E D YL + +FR + Sbjct: 17 ANRRGAARLAAVQALYQMDIAGAGINDIFAEFESHWLGNEVEGDE---YLPAEAAFFRDV 73 Query: 73 IHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVC 132 + GV+ + ID ++ LT W R++ IL + LRAG EL VP V+I EYV Sbjct: 74 VSGVVRDQGKIDPMLDEALTRGWPLKRIEAILRATLRAGAYELGHRKDVPARVVIKEYVD 133 Query: 133 IAHDFFYGDEPKFINAVLDKVSRK 156 +AH F DE +NAVLD+++R+ Sbjct: 134 VAHAFVEADEAGMVNAVLDQIARQ 157 >gi|91977147|ref|YP_569806.1| transcription antitermination protein NusB [Rhodopseudomonas palustris BisB5] gi|119390810|sp|Q136T4|NUSB_RHOPS RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|91683603|gb|ABE39905.1| NusB antitermination factor [Rhodopseudomonas palustris BisB5] Length = 174 Score = 123 bits (308), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 60/152 (39%), Positives = 92/152 (60%), Gaps = 3/152 (1%) Query: 5 DNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHV 64 D K + ++RRG ARLAAVQALYQ+DI G + +E+E++ + E D YL Sbjct: 18 DKKPGDRKANRRGAARLAAVQALYQMDIGGAGIDDTFAEFESHWIGNEVEGDQ---YLPA 74 Query: 65 DLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVE 124 + +FR I+ GV+ + +D LI L + W +R+D I+ +++RAG EL +P Sbjct: 75 EAAFFRDIVSGVVRDQTKLDPLIDEALAKGWPLARIDAIIRAVMRAGAYELEHRKDIPAR 134 Query: 125 VIISEYVCIAHDFFYGDEPKFINAVLDKVSRK 156 V++SEYV +AH F DE +NAVLD+++R+ Sbjct: 135 VVVSEYVDVAHAFVEKDETGMVNAVLDQIARQ 166 >gi|312113512|ref|YP_004011108.1| NusB antitermination factor [Rhodomicrobium vannielii ATCC 17100] gi|311218641|gb|ADP70009.1| NusB antitermination factor [Rhodomicrobium vannielii ATCC 17100] Length = 185 Score = 122 bits (307), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 66/168 (39%), Positives = 96/168 (57%), Gaps = 10/168 (5%) Query: 7 KKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDL 66 K DL R ARLAAVQALYQ+++ + ++ E+ RF + +Y D Sbjct: 12 KADLPAGQPRTRARLAAVQALYQMEMTQRDLSLVLQEFLGRRF------ETVEIYAGADR 65 Query: 67 EWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVI 126 +FR I+ G+ + IDL I++ L W SR+D IL +ILR+GV EL + + VP + Sbjct: 66 SFFRDIVEGIARGQAKIDLEIAAHLASGWKLSRIDSILRAILRSGVYELTDRNDVPARAV 125 Query: 127 ISEYVCIAHDFFYGDEPKFINAVLDKVSR----KEEIKRSGCVSAITQ 170 I+EYV IA DFF G+EP +N VLD+V+R +E ++SG T+ Sbjct: 126 INEYVEIAKDFFGGEEPGVVNGVLDRVARAKRSREFGRKSGGKGGPTK 173 >gi|27380139|ref|NP_771668.1| transcription antitermination protein NusB [Bradyrhizobium japonicum USDA 110] gi|32171616|sp|Q89K81|NUSB_BRAJA RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|27353293|dbj|BAC50293.1| N-utilization substance protein B [Bradyrhizobium japonicum USDA 110] Length = 165 Score = 122 bits (305), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 62/156 (39%), Positives = 95/156 (60%), Gaps = 7/156 (4%) Query: 5 DNKKDLKLS----HRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESV 60 +NKK L+ +RRG ARLAAVQALYQ+DI G +I +E+E++ + E D Sbjct: 4 NNKKPAGLTEKKANRRGAARLAAVQALYQMDIAGAGINDIFAEFESHWLGNEVEGDT--- 60 Query: 61 YLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHS 120 YL + +FR ++ GV+ ++ +D LI L++ W R++ IL ++LRAG EL Sbjct: 61 YLPAEAAFFRDVVSGVVRDQKKLDPLIDEALSKGWPLKRIEAILRAVLRAGAYELQHRKD 120 Query: 121 VPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRK 156 VP V++SEYV +A+ F +E +NAVLD++ R+ Sbjct: 121 VPGRVVVSEYVDVANAFVDREETGMVNAVLDQIGRQ 156 >gi|92117364|ref|YP_577093.1| transcription antitermination protein NusB [Nitrobacter hamburgensis X14] gi|119390788|sp|Q1QMB4|NUSB_NITHX RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|91800258|gb|ABE62633.1| NusB antitermination factor [Nitrobacter hamburgensis X14] Length = 160 Score = 120 bits (302), Expect = 4e-26, Method: Compositional matrix adjust. Identities = 59/146 (40%), Positives = 91/146 (62%), Gaps = 3/146 (2%) Query: 11 KLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFR 70 K ++RRG ARLAAVQALYQ++I G ++ +E+E++ ++ E D YL + +FR Sbjct: 10 KKANRRGAARLAAVQALYQMEIGGAGINDVFAEFESHWLGSEVEGDK---YLPAEAAFFR 66 Query: 71 VIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEY 130 ++ GV+ + +D LI L+ W R+D IL ++LRAG EL VP V++SEY Sbjct: 67 DVVAGVVRDQARLDPLIDDALSRGWPLKRIDAILRAVLRAGSYELEHRKDVPARVVVSEY 126 Query: 131 VCIAHDFFYGDEPKFINAVLDKVSRK 156 V +AH F +E +NAVLD+++R+ Sbjct: 127 VDVAHAFIEKEEVGMVNAVLDQIARR 152 >gi|148255993|ref|YP_001240578.1| transcription antitermination protein NusB [Bradyrhizobium sp. BTAi1] gi|166918804|sp|A5EKH8|NUSB_BRASB RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|146408166|gb|ABQ36672.1| NusB antitermination factor [Bradyrhizobium sp. BTAi1] Length = 169 Score = 120 bits (302), Expect = 5e-26, Method: Compositional matrix adjust. Identities = 58/146 (39%), Positives = 93/146 (63%), Gaps = 3/146 (2%) Query: 11 KLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFR 70 + ++RRG ARLAAVQALYQ+DI G ++++E+E++ ++ E + YL + +FR Sbjct: 18 RKANRRGAARLAAVQALYQMDIAGAGINDVLAEFESHWLGSEVEGEQ---YLPAEAAFFR 74 Query: 71 VIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEY 130 I+ GV+ + ID ++ + L W R++ IL ++LRAG EL VP +V++SEY Sbjct: 75 DIVSGVVRDQTKIDPVLDTALERGWPLQRIEAILRAVLRAGAYELERRKDVPAKVVVSEY 134 Query: 131 VCIAHDFFYGDEPKFINAVLDKVSRK 156 V IAH F DE +NAVL++++R+ Sbjct: 135 VDIAHAFVERDETGMVNAVLEQLARQ 160 >gi|146341341|ref|YP_001206389.1| transcription antitermination protein NusB [Bradyrhizobium sp. ORS278] gi|166918805|sp|A4YW92|NUSB_BRASO RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|146194147|emb|CAL78168.1| antitermination factor (L factor) (N utilization substance protein B) [Bradyrhizobium sp. ORS278] Length = 168 Score = 119 bits (299), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 58/146 (39%), Positives = 92/146 (63%), Gaps = 3/146 (2%) Query: 11 KLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFR 70 + ++RRG ARLAAVQALYQ+DI G ++++E+E++ + E + YL + +FR Sbjct: 17 RKANRRGAARLAAVQALYQMDIAGAGINDVLAEFESHWLGNEVEGEQ---YLPAEAAFFR 73 Query: 71 VIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEY 130 I+ GV+ + ID ++ + L W R++ IL ++LRAG EL VP +V++SEY Sbjct: 74 DIVSGVVRDQTKIDPVLDTALERGWPLQRIEAILRAVLRAGAYELERRKDVPAKVVVSEY 133 Query: 131 VCIAHDFFYGDEPKFINAVLDKVSRK 156 V IAH F DE +NAVL++++R+ Sbjct: 134 VDIAHAFVERDETGMVNAVLEQLARQ 159 >gi|115524819|ref|YP_781730.1| transcription antitermination protein NusB [Rhodopseudomonas palustris BisA53] gi|115518766|gb|ABJ06750.1| NusB antitermination factor [Rhodopseudomonas palustris BisA53] Length = 174 Score = 118 bits (295), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 59/150 (39%), Positives = 94/150 (62%), Gaps = 4/150 (2%) Query: 7 KKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDL 66 K D K ++RRG ARLAAVQALYQ+++ G +I +E+E++ + E + YL + Sbjct: 20 KGDRK-ANRRGAARLAAVQALYQMEVGGAGLNDIFAEFESHWLGHEVEGEQ---YLPAEA 75 Query: 67 EWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVI 126 +F+ I+ GV+ + +D LI L+ W +R++ IL +++RAG EL VP V+ Sbjct: 76 AFFQDIVSGVVRDQLQLDPLIDEALSRGWPLARIEAILRAVMRAGAYELQHRKDVPARVV 135 Query: 127 ISEYVCIAHDFFYGDEPKFINAVLDKVSRK 156 +SEYV +A+ F GDE +NAVLD+++R+ Sbjct: 136 VSEYVDVANAFVEGDETGMVNAVLDQIARQ 165 >gi|75675914|ref|YP_318335.1| transcription antitermination protein NusB [Nitrobacter winogradskyi Nb-255] gi|119390791|sp|Q3SRV8|NUSB_NITWN RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|74420784|gb|ABA04983.1| NusB antitermination factor [Nitrobacter winogradskyi Nb-255] Length = 161 Score = 117 bits (293), Expect = 6e-25, Method: Compositional matrix adjust. Identities = 58/146 (39%), Positives = 90/146 (61%), Gaps = 3/146 (2%) Query: 11 KLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFR 70 + ++RRG ARLAAVQALYQ++I G ++ +E++++ + E D YL + +FR Sbjct: 10 RKANRRGAARLAAVQALYQMEIGGAGINDVFAEFDSHWLGNEVEGDR---YLPAEAAFFR 66 Query: 71 VIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEY 130 ++ GV+ + ID LI L++ W R+ IL ++LRAG EL VP V++SEY Sbjct: 67 DVVAGVVRDQVRIDPLIDDALSKSWPLKRVAAILRAVLRAGSYELEHRKDVPARVVVSEY 126 Query: 131 VCIAHDFFYGDEPKFINAVLDKVSRK 156 V +AH F DE +NAVLD+++R+ Sbjct: 127 VDVAHAFVEKDEAGMVNAVLDQIARR 152 >gi|85715455|ref|ZP_01046436.1| transcription antitermination protein NusB [Nitrobacter sp. Nb-311A] gi|85697650|gb|EAQ35526.1| transcription antitermination protein NusB [Nitrobacter sp. Nb-311A] Length = 160 Score = 115 bits (289), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 56/146 (38%), Positives = 90/146 (61%), Gaps = 3/146 (2%) Query: 11 KLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFR 70 + ++RRG ARLAAVQALYQ++I G ++ +E++++ + E D YL + +FR Sbjct: 10 RKANRRGAARLAAVQALYQMEISGAGVNDVFAEFDSHWLGNEVEGDR---YLPAEAAFFR 66 Query: 71 VIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEY 130 ++ GV+ + ID LI L++ W R+ IL ++LRAG EL +P V++SEY Sbjct: 67 DVVAGVVRDQVRIDPLIDDALSKGWPLKRIAAILRAVLRAGSYELEHRKDIPARVVVSEY 126 Query: 131 VCIAHDFFYGDEPKFINAVLDKVSRK 156 V +AH F +E +NAVLD+++R+ Sbjct: 127 VDVAHAFVENEEAGMVNAVLDQIARR 152 >gi|254417847|ref|ZP_05031571.1| transcription antitermination factor NusB [Brevundimonas sp. BAL3] gi|196184024|gb|EDX79000.1| transcription antitermination factor NusB [Brevundimonas sp. BAL3] Length = 174 Score = 113 bits (283), Expect = 9e-24, Method: Compositional matrix adjust. Identities = 58/145 (40%), Positives = 88/145 (60%), Gaps = 3/145 (2%) Query: 11 KLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFR 70 K R ++RLAAVQALYQ+++ G +I+E+ +RF DT+++ E++ D +F Sbjct: 29 KQRRARTVSRLAAVQALYQMELAGEGVETVITEFANFRF--DTDIEGEAL-AEADEAYFA 85 Query: 71 VIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEY 130 I+ GV++ ++ ID I + L W R+D L ++LR+G ELI+ P EV+I EY Sbjct: 86 DIVRGVIESQRDIDTAIKARLASNWKLERIDATLRALLRSGAWELIKHPETPREVVIDEY 145 Query: 131 VCIAHDFFYGDEPKFINAVLDKVSR 155 V +A FF E +F+NA LD VSR Sbjct: 146 VELAKAFFDDSEARFVNAALDGVSR 170 >gi|58040838|ref|YP_192802.1| NusB family protein [Gluconobacter oxydans 621H] gi|81556897|sp|Q5FNA1|NUSB_GLUOX RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|58003252|gb|AAW62146.1| NusB family protein [Gluconobacter oxydans 621H] Length = 160 Score = 113 bits (282), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 60/156 (38%), Positives = 89/156 (57%), Gaps = 2/156 (1%) Query: 1 MTIQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESV 60 MT+ D R IAR+AAVQAL+Q + G + +IS++ +R + T + Sbjct: 1 MTVTDAPSANPTRRSRTIARVAAVQALFQCEQSGDTAETVISQFIRHRRISSTASFDDGH 60 Query: 61 YLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHS 120 DL+ F+ I+ GV R+ ID +S L E+W RLD +L ++LRA V E+ Sbjct: 61 IPDADLKLFQEIVLGVTRRQDDIDAKLSDVLPEQWPLPRLDPVLRALLRAAVFEI--GTD 118 Query: 121 VPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRK 156 P +II+EY+ +AH FF GDEPK +N +LD +SR+ Sbjct: 119 TPDRIIINEYLDVAHGFFSGDEPKMVNGILDTLSRR 154 >gi|330993560|ref|ZP_08317495.1| N utilization substance protein B-like protein [Gluconacetobacter sp. SXCC-1] gi|329759590|gb|EGG76099.1| N utilization substance protein B-like protein [Gluconacetobacter sp. SXCC-1] Length = 177 Score = 112 bits (280), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 57/159 (35%), Positives = 86/159 (54%), Gaps = 4/159 (2%) Query: 1 MTIQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELD---V 57 MT D + K+ R +R+AAVQAL+QI+ G S +I+++ +R D Sbjct: 1 MTQTDGDRQPKVRSRTA-SRVAAVQALFQIEQAGESPEHVINQFNRHRLGTSVVQDGSYA 59 Query: 58 ESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIE 117 E D F +++ G + R++ ID L+ L W +RLD +L +I+ A E+ Sbjct: 60 EGQVPDADARLFGIVVRGAVARQERIDGLLHEILPASWPLARLDPVLRAIMHAAGGEMTG 119 Query: 118 CHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRK 156 VP VII+EY+ IAH F GDEP+ +N VLD +SR+ Sbjct: 120 ADPVPARVIINEYMDIAHGFLAGDEPRMLNGVLDALSRR 158 >gi|158422890|ref|YP_001524182.1| antitermination protein [Azorhizobium caulinodans ORS 571] gi|158329779|dbj|BAF87264.1| antitermination protein [Azorhizobium caulinodans ORS 571] Length = 137 Score = 112 bits (280), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 52/133 (39%), Positives = 80/133 (60%), Gaps = 3/133 (2%) Query: 24 VQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHI 83 +QALYQ+DI G EI++E+ET+ + E DV Y D FR ++ GV+ +++ I Sbjct: 1 MQALYQMDIAGTPVNEILAEFETHWLGREVEGDV---YPEADRALFRTVVEGVLAQQRTI 57 Query: 84 DLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEP 143 D ++ LT W R+++++ + LRAG ELI P V+I+EYV +A FF +E Sbjct: 58 DPMVDEALTAGWPLRRVELVMRATLRAGAFELIGKPETPARVVIAEYVNVAAAFFEREET 117 Query: 144 KFINAVLDKVSRK 156 +NAVLD ++RK Sbjct: 118 GMVNAVLDSLARK 130 >gi|154253354|ref|YP_001414178.1| NusB antitermination factor [Parvibaculum lavamentivorans DS-1] gi|154157304|gb|ABS64521.1| NusB antitermination factor [Parvibaculum lavamentivorans DS-1] Length = 171 Score = 112 bits (279), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 56/135 (41%), Positives = 83/135 (61%), Gaps = 3/135 (2%) Query: 21 LAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRK 80 L AVQALYQ+DI E++ E+ +R E + ++ D F ++ GV+ + Sbjct: 24 LFAVQALYQMDIAATPLDEVVEEFVEHRL---EEPEGDNEIFAADKVHFEDVVRGVVREQ 80 Query: 81 QHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYG 140 + +D+ ++S L + WS +RLD L +ILR G EL C VP++V+I+EYV IAH FF G Sbjct: 81 RELDVQVNSALAKGWSLARLDATLRAILRCGTYELRRCKDVPLKVVINEYVEIAHAFFEG 140 Query: 141 DEPKFINAVLDKVSR 155 DEP +NAVLD++ R Sbjct: 141 DEPGVVNAVLDRLGR 155 >gi|170750376|ref|YP_001756636.1| NusB antitermination factor [Methylobacterium radiotolerans JCM 2831] gi|170656898|gb|ACB25953.1| NusB antitermination factor [Methylobacterium radiotolerans JCM 2831] Length = 197 Score = 110 bits (276), Expect = 5e-23, Method: Compositional matrix adjust. Identities = 62/157 (39%), Positives = 93/157 (59%), Gaps = 7/157 (4%) Query: 11 KLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFR 70 K+S R G ARLA VQALY++DI G + ++E+E F E+D + + +FR Sbjct: 21 KISPRSG-ARLAVVQALYEMDISGKGVLDALAEFEA--FWIGQEVD-GIAHPPAETAFFR 76 Query: 71 VIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEY 130 ++ G ++ ++ ID + L + W R++++L +ILRAG EL+ VP ISEY Sbjct: 77 DLLRGTVEEQRAIDPKLDQALAQGWPLRRIEIVLRAILRAGAYELMFRRDVPAAAAISEY 136 Query: 131 VCIAHDFFYGDEPKFINAVLDKVSRKEEIKRSGCVSA 167 V +AH F+ DEP +NAVLD+V+R E+ R G V A Sbjct: 137 VDVAHSFYTADEPGLVNAVLDRVAR--EV-RPGEVGA 170 >gi|23012491|ref|ZP_00052562.1| COG0781: Transcription termination factor [Magnetospirillum magnetotacticum MS-1] Length = 169 Score = 110 bits (275), Expect = 7e-23, Method: Compositional matrix adjust. Identities = 60/166 (36%), Positives = 94/166 (56%), Gaps = 4/166 (2%) Query: 5 DNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHV 64 D K + R G ARLA VQALY+++I + ++E+E F E+D V+ Sbjct: 6 DTPAQPKTNTRTG-ARLAVVQALYEMEISDKGVIDALAEFEA--FWIGQEID-GVVHPPA 61 Query: 65 DLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVE 124 + +FR ++ G ++ ++ ID + + L + W RL+++L +ILRAG EL+ VP Sbjct: 62 ETAFFRDVLRGAVEEQRAIDPKLDAALAKGWPLRRLEVVLRAILRAGAYELMFRKDVPAR 121 Query: 125 VIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRSGCVSAITQ 170 ISEYV +AH F+ GDEP +NAVLD+V R+ G +A ++ Sbjct: 122 AAISEYVDVAHSFYGGDEPGMVNAVLDRVGREVRSTEFGIPAAPSK 167 >gi|296284343|ref|ZP_06862341.1| transcription termination factor [Citromicrobium bathyomarinum JL354] Length = 153 Score = 110 bits (274), Expect = 8e-23, Method: Compositional matrix adjust. Identities = 58/143 (40%), Positives = 80/143 (55%), Gaps = 3/143 (2%) Query: 13 SHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVI 72 S R ARLAAVQALYQ D+ G +++ E+ +R + E D Y ++ +F I Sbjct: 8 STARSAARLAAVQALYQQDMEGTKLPKLLDEFHQHRLGREIEGDT---YADAEVPFFDDI 64 Query: 73 IHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVC 132 + GV R++ IDL +S L + WS RLD + +LR G ELI +P +ISEYV Sbjct: 65 VRGVDARREEIDLQLSEKLAQGWSLKRLDKTMLQVLRCGTYELIARADIPTGAVISEYVD 124 Query: 133 IAHDFFYGDEPKFINAVLDKVSR 155 +A FF E KF N VLD V++ Sbjct: 125 VAKAFFDDREAKFANGVLDAVAK 147 >gi|296115207|ref|ZP_06833848.1| NusB antitermination factor [Gluconacetobacter hansenii ATCC 23769] gi|295978308|gb|EFG85045.1| NusB antitermination factor [Gluconacetobacter hansenii ATCC 23769] Length = 183 Score = 110 bits (274), Expect = 8e-23, Method: Compositional matrix adjust. Identities = 56/152 (36%), Positives = 84/152 (55%), Gaps = 4/152 (2%) Query: 7 KKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRF-CADTELD-VESVYLHV 64 +KD S R +R+ AVQAL+QI+ G + ++S++ +R T L E Sbjct: 14 RKDRNRS--RTASRVGAVQALFQIEQGGDNAENVVSQFTHHRLPTGKTSLGYAEGQVPDA 71 Query: 65 DLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVE 124 D+ F I+ G + R+ ID +++ L W RLD +L ++LRA EL P Sbjct: 72 DIRLFTAIVRGSVARQADIDAMVADVLPASWPMDRLDPVLRALLRAAGGELTAQDPAPSR 131 Query: 125 VIISEYVCIAHDFFYGDEPKFINAVLDKVSRK 156 VII+EY+ +AH FF GDEP+ +N VLD +SR+ Sbjct: 132 VIINEYMDVAHGFFSGDEPRMLNGVLDAMSRR 163 >gi|162147540|ref|YP_001602001.1| N utilization substance protein B-like protein [Gluconacetobacter diazotrophicus PAl 5] gi|209545645|ref|YP_002277874.1| NusB antitermination factor [Gluconacetobacter diazotrophicus PAl 5] gi|161786117|emb|CAP55699.1| N utilization substance protein B homolog [Gluconacetobacter diazotrophicus PAl 5] gi|209533322|gb|ACI53259.1| NusB antitermination factor [Gluconacetobacter diazotrophicus PAl 5] Length = 183 Score = 110 bits (274), Expect = 9e-23, Method: Compositional matrix adjust. Identities = 56/159 (35%), Positives = 83/159 (52%), Gaps = 5/159 (3%) Query: 3 IQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVY- 61 I D+ + R +R+A VQAL+QI+ G + +I+++ +R + D Y Sbjct: 4 IPDDDRTHSKPRSRTASRVAVVQALFQIEQAGDTPDTVIAQFLRHRLGTASGADQGEEYE 63 Query: 62 ----LHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIE 117 D+ F + + R++ ID LI L W RLD +L ++LRA EL Sbjct: 64 DGRVPEADIRLFEQVARAAVARREQIDALIVEVLPPSWPVGRLDPVLRALLRAAGAELAA 123 Query: 118 CHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRK 156 VP VII+EY+ IAH FF GDEPK +N VLD ++R+ Sbjct: 124 TGGVPTRVIINEYLDIAHGFFSGDEPKMVNGVLDTLARR 162 >gi|197105131|ref|YP_002130508.1| N utilization substance protein B [Phenylobacterium zucineum HLK1] gi|196478551|gb|ACG78079.1| N utilization substance protein B [Phenylobacterium zucineum HLK1] Length = 149 Score = 110 bits (274), Expect = 9e-23, Method: Compositional matrix adjust. Identities = 56/140 (40%), Positives = 77/140 (55%), Gaps = 3/140 (2%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 R +ARLAAVQALYQ+++ +I E+ +RF D E + D +F ++ G Sbjct: 8 RSVARLAAVQALYQMEVSSTGVEAVIREFSDHRFDRDVEGET---LASADEAFFADLVRG 64 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135 V+ ++ ID I L + W RLD + +ILRAG EL+ VP EV I EYV + Sbjct: 65 VVREQKPIDAAIVKRLAQGWRLERLDATVRAILRAGAFELMHRSDVPTEVAIDEYVELTK 124 Query: 136 DFFYGDEPKFINAVLDKVSR 155 FF G EP F+N LD V+R Sbjct: 125 SFFEGPEPGFVNGALDGVAR 144 >gi|126463172|ref|YP_001044286.1| NusB antitermination factor [Rhodobacter sphaeroides ATCC 17029] gi|221640214|ref|YP_002526476.1| NusB antitermination factor [Rhodobacter sphaeroides KD131] gi|126104836|gb|ABN77514.1| NusB antitermination factor [Rhodobacter sphaeroides ATCC 17029] gi|221160995|gb|ACM01975.1| NusB antitermination factor [Rhodobacter sphaeroides KD131] Length = 157 Score = 109 bits (273), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 57/157 (36%), Positives = 95/157 (60%), Gaps = 10/157 (6%) Query: 1 MTIQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESV 60 M+++ +++ +K + +RL AVQAL+Q++ G + ++ E+ET+RF A E D Sbjct: 1 MSVKPDRRQMKSA-----SRLYAVQALFQMETTGQTVEQVAREFETHRFGAVYEGDE--- 52 Query: 61 YLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHS 120 D + FR I+ G ++R+ ID + L KW R+D ++ ++ RA EL+E + Sbjct: 53 MAEGDAKSFRAIVSGAVNRQAGIDQMTDRALVAKWPIDRIDPVIRALFRAAGSELLESET 112 Query: 121 VPVEVIISEYVCIAHDFFY-GDEPKFINAVLDKVSRK 156 P +V+I+E+V IA FF G EPKF+NAVLD ++R+ Sbjct: 113 -PPKVVINEFVDIAKAFFPEGREPKFVNAVLDHMARE 148 >gi|114570081|ref|YP_756761.1| transcription antitermination protein NusB [Maricaulis maris MCS10] gi|119390782|sp|Q0APG4|NUSB_MARMM RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|114340543|gb|ABI65823.1| NusB antitermination factor [Maricaulis maris MCS10] Length = 160 Score = 109 bits (273), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 52/134 (38%), Positives = 81/134 (60%), Gaps = 3/134 (2%) Query: 22 AAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQ 81 +AVQALYQ++I G + +I E+ +RF A E ++ D ++F ++ GV++R+ Sbjct: 23 SAVQALYQMEIGGLGASAVIREFREHRFGACGEA---PEFVEADEDFFESLVAGVVERQA 79 Query: 82 HIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGD 141 +D + + L +KW RLD + +ILR G EL+ VP V+I EY+ +A+ FF G Sbjct: 80 DVDPAMDALLADKWRLERLDATVRAILRVGGFELLYRKDVPARVVIDEYIEVANAFFEGA 139 Query: 142 EPKFINAVLDKVSR 155 EPKFINA D+ +R Sbjct: 140 EPKFINAAFDRCAR 153 >gi|170744825|ref|YP_001773480.1| NusB antitermination factor [Methylobacterium sp. 4-46] gi|168199099|gb|ACA21046.1| NusB antitermination factor [Methylobacterium sp. 4-46] Length = 156 Score = 109 bits (272), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 57/146 (39%), Positives = 89/146 (60%), Gaps = 4/146 (2%) Query: 10 LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF 69 +K + R G ARLA VQALY+++I G + ++E+E + + +E + + +F Sbjct: 1 MKPAERSG-ARLAVVQALYEMEISGKGVIDALAEFEAF-WIGQVVDGIE--HPPAETAFF 56 Query: 70 RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISE 129 R ++ G ++ ++ ID + L+ W R++ +L +ILRAG E+I VPV V ISE Sbjct: 57 RDVLRGAVEEQRLIDQRLDGALSAGWPLRRIEAVLRAILRAGAYEVIFRKDVPVRVAISE 116 Query: 130 YVCIAHDFFYGDEPKFINAVLDKVSR 155 YV +AH F+ GDEP +NAVLDKV+R Sbjct: 117 YVDVAHSFYGGDEPGLVNAVLDKVAR 142 >gi|154248201|ref|YP_001419159.1| NusB antitermination factor [Xanthobacter autotrophicus Py2] gi|154162286|gb|ABS69502.1| NusB antitermination factor [Xanthobacter autotrophicus Py2] Length = 163 Score = 109 bits (272), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 54/149 (36%), Positives = 89/149 (59%), Gaps = 6/149 (4%) Query: 15 RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74 ++ ARL AVQALYQ+D+ +I++E+E++ + E VE + D+ FR ++ Sbjct: 16 KKSAARLGAVQALYQMDLAQTPLNDILAEFESHWLGQEVE-GVE--FPEADVRLFRTVVE 72 Query: 75 GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134 GV++ ++ ID ++ + LT+ W R++ +L ++LRAG EL VP V+I+EYV +A Sbjct: 73 GVLNDQRRIDPMVDNALTKGWPLKRVEAVLRAVLRAGAFELSAKPDVPARVVITEYVNVA 132 Query: 135 HDFFYGDEPKFINAVLDKVS---RKEEIK 160 F DE +NAVLD ++ R +E K Sbjct: 133 GAFLDRDETGMVNAVLDALAHDLRPDEFK 161 >gi|220927277|ref|YP_002502579.1| NusB antitermination factor [Methylobacterium nodulans ORS 2060] gi|219951884|gb|ACL62276.1| NusB antitermination factor [Methylobacterium nodulans ORS 2060] Length = 156 Score = 108 bits (271), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 57/146 (39%), Positives = 89/146 (60%), Gaps = 4/146 (2%) Query: 10 LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF 69 +K + R G ARLA VQALY+++I G + ++E+E + + +E + + +F Sbjct: 1 MKPAERSG-ARLAVVQALYEMEISGKGVIDALAEFEAF-WIGQVVDGIE--HPPAETAFF 56 Query: 70 RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISE 129 R ++ G ++ ++ ID + L+ W R++ +L +ILRAG E+I VPV V ISE Sbjct: 57 RDVLRGAVEEQRVIDQRLDGALSAGWPLRRVEAVLRAILRAGAYEVIFRKDVPVRVAISE 116 Query: 130 YVCIAHDFFYGDEPKFINAVLDKVSR 155 YV +AH F+ GDEP +NAVLDKV+R Sbjct: 117 YVDVAHSFYGGDEPGLVNAVLDKVAR 142 >gi|83858229|ref|ZP_00951751.1| transcription antitermination protein NusB [Oceanicaulis alexandrii HTCC2633] gi|83853052|gb|EAP90904.1| transcription antitermination protein NusB [Oceanicaulis alexandrii HTCC2633] Length = 158 Score = 108 bits (269), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 52/133 (39%), Positives = 78/133 (58%), Gaps = 3/133 (2%) Query: 24 VQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHI 83 VQALYQ++ G ++ E+ +RF + E Y+ D ++F ++ G++ + + Sbjct: 25 VQALYQMETSGSGAKAVVKEFRDHRFGYEDE---PGDYVETDEDFFENLVTGIVSIQADV 81 Query: 84 DLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEP 143 D IS L E W SRLD + +ILRAG ELI VP V+I+EYV +AH FF G EP Sbjct: 82 DKRISGVLKEGWKLSRLDATVRAILRAGGYELIARKDVPPAVVINEYVDVAHAFFEGTEP 141 Query: 144 KFINAVLDKVSRK 156 F+NA LD ++++ Sbjct: 142 GFVNATLDALAKQ 154 >gi|16125609|ref|NP_420173.1| transcription antitermination protein NusB [Caulobacter crescentus CB15] gi|221234359|ref|YP_002516795.1| transcription antitermination protein NusB [Caulobacter crescentus NA1000] gi|22095966|sp|Q9A8J3|NUSB_CAUCR RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|254772622|sp|B8H535|NUSB_CAUCN RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|13422711|gb|AAK23341.1| N utilization substance protein B [Caulobacter crescentus CB15] gi|220963531|gb|ACL94887.1| N utilization substance protein B [Caulobacter crescentus NA1000] Length = 149 Score = 108 bits (269), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 59/141 (41%), Positives = 78/141 (55%), Gaps = 5/141 (3%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHV-DLEWFRVIIH 74 R +ARLAAVQALYQ+++ G +I E+ +RF + DVE L D +F + Sbjct: 9 RSVARLAAVQALYQMEVSGAGVDSVIREFGEHRF----DRDVEGEQLAAADETFFADLAR 64 Query: 75 GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134 GV+ + ID I L W RLD ++LRAG EL+ VP EV+I+EYV IA Sbjct: 65 GVVTNQAKIDQGIVKRLASGWRLERLDATARAVLRAGAFELMYRSDVPTEVVINEYVEIA 124 Query: 135 HDFFYGDEPKFINAVLDKVSR 155 FF G E FIN LD ++R Sbjct: 125 KSFFEGPESGFINGALDAIAR 145 >gi|260753881|ref|YP_003226774.1| NusB antitermination factor [Zymomonas mobilis subsp. mobilis NCIMB 11163] gi|258553244|gb|ACV76190.1| NusB antitermination factor [Zymomonas mobilis subsp. mobilis NCIMB 11163] Length = 157 Score = 108 bits (269), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 59/148 (39%), Positives = 84/148 (56%), Gaps = 5/148 (3%) Query: 11 KLSHR--RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEW 68 K H+ R ARLAAVQALYQ ++ ++ E+ YR A E ++ Y + + Sbjct: 6 KRPHKNARSAARLAAVQALYQREMEKTPLNILLDEFHQYRLGATIE---DATYTKAEPSF 62 Query: 69 FRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIIS 128 F I+ GV R + ID +IS L+E+WS RLD + ILRAG EL+ VP IIS Sbjct: 63 FDDIVRGVGTRCEEIDRVISENLSERWSLDRLDRPMRQILRAGTYELLARPDVPTATIIS 122 Query: 129 EYVCIAHDFFYGDEPKFINAVLDKVSRK 156 EY+ +A+ F+ E F+N +LD V++K Sbjct: 123 EYIDVANAFYDRQEKNFVNGLLDTVAKK 150 >gi|103487508|ref|YP_617069.1| NusB antitermination factor [Sphingopyxis alaskensis RB2256] gi|119390826|sp|Q1GRI6|NUSB_SPHAL RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|98977585|gb|ABF53736.1| NusB antitermination factor [Sphingopyxis alaskensis RB2256] Length = 149 Score = 108 bits (269), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 59/145 (40%), Positives = 81/145 (55%), Gaps = 3/145 (2%) Query: 11 KLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFR 70 K + R ARLAAVQALYQ ++ ++I E+ +R A E D E Y D+ +F Sbjct: 3 KRAQSRSAARLAAVQALYQHEMEATPVAQLIHEFHQHRIGAIIE-DAE--YADADVPFFD 59 Query: 71 VIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEY 130 I+ GV+ R ID I++ L W+ RLD + +ILRAG ELI VPV ++SEY Sbjct: 60 DIVKGVLARADEIDAAITARLASGWTMERLDRTMKAILRAGTYELIARGDVPVGAVVSEY 119 Query: 131 VCIAHDFFYGDEPKFINAVLDKVSR 155 V +A FF G E F N +LD + + Sbjct: 120 VDVAKAFFDGREAGFANGLLDAIGK 144 >gi|326386550|ref|ZP_08208172.1| NusB antitermination factor [Novosphingobium nitrogenifigens DSM 19370] gi|326208865|gb|EGD59660.1| NusB antitermination factor [Novosphingobium nitrogenifigens DSM 19370] Length = 148 Score = 108 bits (269), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 56/140 (40%), Positives = 84/140 (60%), Gaps = 3/140 (2%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 R ARLAAVQALYQ+++ T ++ E+ +R + E DVE YL D+ +F ++ G Sbjct: 9 RSAARLAAVQALYQLEMEQPELTTLLDEFHRHRLGREIE-DVE--YLDADVAFFDDVVKG 65 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135 V+ R+ ID ++ L + WS SRLD + ILRAG EL+ + V +I EY+ +AH Sbjct: 66 VVARRDEIDAKLTERLAQGWSLSRLDKTMLQILRAGTYELLARSDIGVGTVIDEYLDVAH 125 Query: 136 DFFYGDEPKFINAVLDKVSR 155 FF E KF+N +LD +++ Sbjct: 126 AFFDAREAKFVNGLLDALAK 145 >gi|302383000|ref|YP_003818823.1| NusB antitermination factor [Brevundimonas subvibrioides ATCC 15264] gi|302193628|gb|ADL01200.1| NusB antitermination factor [Brevundimonas subvibrioides ATCC 15264] Length = 176 Score = 108 bits (269), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 56/140 (40%), Positives = 80/140 (57%), Gaps = 3/140 (2%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 R +ARLAAVQALYQ+++ G +I+E+ +RF AD E + D +F ++ G Sbjct: 34 RTVARLAAVQALYQMELAGEGVETVITEFSNHRFDADIEGEP---LAEADEAYFADVVRG 90 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135 V+ ++ ID + + L W RLD L ++LR G EL VP E++I EYV +A Sbjct: 91 VIQSQREIDASVKARLASNWRLERLDATLRALLRCGAWELAHRTDVPKEIVIDEYVELAK 150 Query: 136 DFFYGDEPKFINAVLDKVSR 155 FF E KF+NA LD V+R Sbjct: 151 AFFDEAEAKFVNAALDGVAR 170 >gi|241761517|ref|ZP_04759604.1| NusB antitermination factor [Zymomonas mobilis subsp. mobilis ATCC 10988] gi|283856498|ref|YP_163287.2| NusB antitermination factor [Zymomonas mobilis subsp. mobilis ZM4] gi|241373825|gb|EER63358.1| NusB antitermination factor [Zymomonas mobilis subsp. mobilis ATCC 10988] gi|283775502|gb|AAV90176.2| NusB antitermination factor [Zymomonas mobilis subsp. mobilis ZM4] Length = 157 Score = 107 bits (268), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 58/148 (39%), Positives = 84/148 (56%), Gaps = 5/148 (3%) Query: 11 KLSHR--RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEW 68 K H+ R ARLAAVQALYQ ++ ++ E+ YR A E ++ Y + + Sbjct: 6 KRPHKNARSAARLAAVQALYQREMEKTPLNILLDEFHQYRLGATIE---DATYTKAEPSF 62 Query: 69 FRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIIS 128 F I+ GV R + ID +IS L+E+WS RLD + ILRAG EL+ VP +IS Sbjct: 63 FDDIVRGVGTRCEEIDRVISENLSERWSLDRLDRPMRQILRAGTYELLARPDVPTATVIS 122 Query: 129 EYVCIAHDFFYGDEPKFINAVLDKVSRK 156 EY+ +A+ F+ E F+N +LD V++K Sbjct: 123 EYIDVANAFYDRQEKNFVNGLLDTVAKK 150 >gi|85707944|ref|ZP_01039010.1| transcription termination factor [Erythrobacter sp. NAP1] gi|85689478|gb|EAQ29481.1| transcription termination factor [Erythrobacter sp. NAP1] Length = 155 Score = 107 bits (267), Expect = 6e-22, Method: Compositional matrix adjust. Identities = 58/148 (39%), Positives = 85/148 (57%), Gaps = 6/148 (4%) Query: 13 SHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVES----VYLHVDLEW 68 S R ARLAAVQALYQ + G + +++ E+ +R E+D E VY ++E+ Sbjct: 7 SQARSTARLAAVQALYQQQMEGTALNKLLDEFHQHRLG--REVDDEDHEGEVYADAEVEF 64 Query: 69 FRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIIS 128 F I+ GV R+ ID ++++ L + W+ RLD + ILRAG ELI VP I+ Sbjct: 65 FDDIVRGVDARRDEIDEILTARLAQGWTLMRLDKTMLQILRAGAYELIARADVPRASAIT 124 Query: 129 EYVCIAHDFFYGDEPKFINAVLDKVSRK 156 EYV +A FF E KF+N +LD V+++ Sbjct: 125 EYVDVAKAFFDDREAKFVNGILDAVAKE 152 >gi|296448765|ref|ZP_06890618.1| NusB antitermination factor [Methylosinus trichosporium OB3b] gi|296253723|gb|EFH00897.1| NusB antitermination factor [Methylosinus trichosporium OB3b] Length = 152 Score = 107 bits (266), Expect = 7e-22, Method: Compositional matrix adjust. Identities = 56/141 (39%), Positives = 83/141 (58%), Gaps = 3/141 (2%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 R +RLA VQALYQ+++ G EI +E+E + + E D Y +L++FR I+ G Sbjct: 6 RSASRLAIVQALYQMEVAGKGLNEIYAEFEVHWIGREIEGDQ---YKPAELQFFRDIVKG 62 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135 V+D + ID + L W R++ ++ +ILRAG EL VPV+V+I EYV +A Sbjct: 63 VLDNQTPIDRALDQALQGGWPLQRIESVMRAILRAGAYELGFRRDVPVKVVIKEYVDVAG 122 Query: 136 DFFYGDEPKFINAVLDKVSRK 156 FF E INAVLD+++R+ Sbjct: 123 AFFGPTESGMINAVLDRLARQ 143 >gi|163852577|ref|YP_001640620.1| transcription antitermination factor NusB [Methylobacterium extorquens PA1] gi|218531417|ref|YP_002422233.1| NusB antitermination factor [Methylobacterium chloromethanicum CM4] gi|240139911|ref|YP_002964388.1| transcription antitermination factor [Methylobacterium extorquens AM1] gi|254562335|ref|YP_003069430.1| transcription antitermination factor [Methylobacterium extorquens DM4] gi|163664182|gb|ABY31549.1| transcription antitermination factor NusB [Methylobacterium extorquens PA1] gi|218523720|gb|ACK84305.1| NusB antitermination factor [Methylobacterium chloromethanicum CM4] gi|240009885|gb|ACS41111.1| transcription antitermination factor [Methylobacterium extorquens AM1] gi|254269613|emb|CAX25584.1| transcription antitermination factor [Methylobacterium extorquens DM4] Length = 171 Score = 107 bits (266), Expect = 7e-22, Method: Compositional matrix adjust. Identities = 56/146 (38%), Positives = 88/146 (60%), Gaps = 4/146 (2%) Query: 11 KLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFR 70 K + R G ARLA VQALY+++I E ++E+E F E+D V+ ++ +FR Sbjct: 12 KPNARTG-ARLAVVQALYEMEISDKGVIEALAEFEA--FWIGQEVD-GVVHPPAEIAFFR 67 Query: 71 VIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEY 130 ++ G ++ ++ ID + + L + W RL+ +L +ILRAG EL+ VP IS+Y Sbjct: 68 DVLRGAVEEQRAIDPKLDTALAKGWPLRRLEAVLRAILRAGAYELMFRRDVPARAAISQY 127 Query: 131 VCIAHDFFYGDEPKFINAVLDKVSRK 156 V +A+ F+ GDEP +NAVLD+V R+ Sbjct: 128 VEVAYSFYGGDEPGMVNAVLDRVGRE 153 >gi|146276474|ref|YP_001166633.1| NusB antitermination factor [Rhodobacter sphaeroides ATCC 17025] gi|145554715|gb|ABP69328.1| NusB antitermination factor [Rhodobacter sphaeroides ATCC 17025] Length = 157 Score = 107 bits (266), Expect = 8e-22, Method: Compositional matrix adjust. Identities = 59/157 (37%), Positives = 94/157 (59%), Gaps = 10/157 (6%) Query: 1 MTIQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESV 60 M+++ +K+ +K + +RL AVQAL+Q++ G + ++ E+ET+RF A E D Sbjct: 1 MSVKPDKRQMKSA-----SRLYAVQALFQMECSGQTVEQVAREFETHRFGAIYEGDE--- 52 Query: 61 YLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHS 120 D FR I+ G ++R+ ID L L KW R+D ++ ++ RA EL+E + Sbjct: 53 MAEGDARSFRSIVSGAVNRQAGIDQLTDRALVAKWPIDRIDPVIRALFRAAGSELLESDT 112 Query: 121 VPVEVIISEYVCIAHDFFY-GDEPKFINAVLDKVSRK 156 P +V+I+E+V IA FF G EPKF+NAVLD ++R+ Sbjct: 113 -PPKVVINEFVDIAKAFFPDGREPKFVNAVLDHMARE 148 >gi|188582598|ref|YP_001926043.1| NusB antitermination factor [Methylobacterium populi BJ001] gi|179346096|gb|ACB81508.1| NusB antitermination factor [Methylobacterium populi BJ001] Length = 172 Score = 106 bits (265), Expect = 9e-22, Method: Compositional matrix adjust. Identities = 56/146 (38%), Positives = 88/146 (60%), Gaps = 4/146 (2%) Query: 11 KLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFR 70 K + R G ARLA VQALY+++I + ++E+E F E+D V+ + +FR Sbjct: 16 KPNTRTG-ARLAVVQALYEMEISDKGVIDALAEFEA--FWIGQEID-GVVHPPAETAFFR 71 Query: 71 VIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEY 130 ++ G ++ ++ ID + + L + W RL+++L +ILRAG EL+ VP IS+Y Sbjct: 72 DVLRGAVEEQRAIDPKLDAALAKGWPLRRLEVVLRAILRAGAYELMFRRDVPARAAISQY 131 Query: 131 VCIAHDFFYGDEPKFINAVLDKVSRK 156 V +AH F+ GDEP +NAVLD+V R+ Sbjct: 132 VDVAHSFYGGDEPGMVNAVLDRVGRE 157 >gi|77464330|ref|YP_353834.1| NusB antitermination factor [Rhodobacter sphaeroides 2.4.1] gi|77388748|gb|ABA79933.1| NusB antitermination factor [Rhodobacter sphaeroides 2.4.1] Length = 155 Score = 106 bits (265), Expect = 9e-22, Method: Compositional matrix adjust. Identities = 55/142 (38%), Positives = 86/142 (60%), Gaps = 5/142 (3%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 + +RL AVQAL+Q++ G + ++ E+ET+RF A E D D + FR I+ G Sbjct: 9 KSASRLYAVQALFQMETTGQTVEQVAREFETHRFGAVYEGDE---MAEGDAKSFRAIVSG 65 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135 ++R+ ID + L KW R+D ++ ++ RA EL+E + P +V+I+E+V IA Sbjct: 66 AVNRQAGIDQMTDRALVAKWPIDRIDPVIRALFRAAGSELLESET-PPKVVINEFVDIAK 124 Query: 136 DFFY-GDEPKFINAVLDKVSRK 156 FF G EPKF+NAVLD ++R+ Sbjct: 125 AFFPEGREPKFVNAVLDHMARE 146 >gi|332559221|ref|ZP_08413543.1| NusB antitermination factor [Rhodobacter sphaeroides WS8N] gi|332276933|gb|EGJ22248.1| NusB antitermination factor [Rhodobacter sphaeroides WS8N] Length = 148 Score = 106 bits (265), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 55/142 (38%), Positives = 86/142 (60%), Gaps = 5/142 (3%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 + +RL AVQAL+Q++ G + ++ E+ET+RF A E D D + FR I+ G Sbjct: 2 KSASRLYAVQALFQMETTGQTVEQVAREFETHRFGAVYEGDE---MAEGDAKSFRAIVSG 58 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135 ++R+ ID + L KW R+D ++ ++ RA EL+E + P +V+I+E+V IA Sbjct: 59 AVNRQAGIDQMTDRALVAKWPIDRIDPVIRALFRAAGSELLESET-PPKVVINEFVDIAK 117 Query: 136 DFFY-GDEPKFINAVLDKVSRK 156 FF G EPKF+NAVLD ++R+ Sbjct: 118 AFFPEGREPKFVNAVLDHMARE 139 >gi|295689070|ref|YP_003592763.1| Nusb antitermination factor [Caulobacter segnis ATCC 21756] gi|295430973|gb|ADG10145.1| NusB antitermination factor [Caulobacter segnis ATCC 21756] Length = 149 Score = 105 bits (263), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 57/144 (39%), Positives = 79/144 (54%), Gaps = 5/144 (3%) Query: 13 SHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHV-DLEWFRV 71 + R +ARLAA+QALYQ+++ G +I E+ +RF + DVE L D +F Sbjct: 6 TQPRSVARLAAIQALYQMEVSGAGVDSVIREFSEHRF----DRDVEGERLAAADETFFAE 61 Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131 + GV+ + +D I L W RLD ++LRAG EL+ VP EV+I+EYV Sbjct: 62 LAKGVVAHQAKVDQGIVKRLASGWRLERLDATARAVLRAGAYELMYRPDVPTEVVINEYV 121 Query: 132 CIAHDFFYGDEPKFINAVLDKVSR 155 IA FF G E FIN LD ++R Sbjct: 122 EIAKSFFEGPEAGFINGALDAIAR 145 >gi|209964638|ref|YP_002297553.1| transcription antitermination protein NusB, putative [Rhodospirillum centenum SW] gi|209958104|gb|ACI98740.1| transcription antitermination protein NusB, putative [Rhodospirillum centenum SW] Length = 179 Score = 105 bits (263), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 48/133 (36%), Positives = 78/133 (58%), Gaps = 3/133 (2%) Query: 24 VQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHI 83 VQALYQI++ G + I E+ +R + + D Y+ D + F I+ GVM R+ + Sbjct: 37 VQALYQIELGGTPSETAIGEFVRHRLGQEIDGDR---YVSADPQLFADIVRGVMARQADV 93 Query: 84 DLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEP 143 D L++ L +W R++ IL +ILRAG EL+ V ++I++Y+ + H FF G EP Sbjct: 94 DQLVTGVLDRQWGLDRMEPILRAILRAGAWELLGNTGVAPHIVINDYIDVGHAFFAGREP 153 Query: 144 KFINAVLDKVSRK 156 +N VLD+++R+ Sbjct: 154 GMVNGVLDRIARQ 166 >gi|300022490|ref|YP_003755101.1| NusB antitermination factor [Hyphomicrobium denitrificans ATCC 51888] gi|299524311|gb|ADJ22780.1| NusB antitermination factor [Hyphomicrobium denitrificans ATCC 51888] Length = 170 Score = 105 bits (261), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 52/133 (39%), Positives = 78/133 (58%), Gaps = 3/133 (2%) Query: 24 VQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHI 83 VQALYQ+D+ G ++I+E+ R D + + D +F I+ V+ R++ I Sbjct: 23 VQALYQMDMAGTDLNDVIAEFLNERLSGDNR---DEMLAGADRVFFADILRAVVRRQREI 79 Query: 84 DLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEP 143 D +I L W R+D IL +ILR GV EL++ + VP V ISEYV +A FF +EP Sbjct: 80 DPMIDEQLAVGWRLVRVDSILRAILRGGVAELVDRYDVPARVAISEYVNVARVFFDEEEP 139 Query: 144 KFINAVLDKVSRK 156 + +N VLDK++R+ Sbjct: 140 RVVNGVLDKLARR 152 >gi|254293744|ref|YP_003059767.1| NusB antitermination factor [Hirschia baltica ATCC 49814] gi|254042275|gb|ACT59070.1| NusB antitermination factor [Hirschia baltica ATCC 49814] Length = 163 Score = 105 bits (261), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 65/159 (40%), Positives = 92/159 (57%), Gaps = 10/159 (6%) Query: 4 QDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADT-ELDVESVYL 62 +D + L+ R G ARLAAVQALYQI+ G + +I +Y C D LD E + Sbjct: 9 KDAARKLRKLSRSG-ARLAAVQALYQIEQTGRAGRAVIEDY-----CEDGIGLDDEGRPI 62 Query: 63 HV-DLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSV 121 D E FR + GV++ I+L I L + W RLD +ILRAGV EL++ + Sbjct: 63 EAADPEIFRNTVEGVIESLDDINLAIVKRLADGWKIERLDATSRAILRAGVYELMKRDDL 122 Query: 122 PVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIK 160 P ++I+ EYV IAH FF EP+FINA+L+ V +E+++ Sbjct: 123 PAQIILDEYVSIAHAFFDDAEPRFINALLENV--REDVR 159 >gi|304320998|ref|YP_003854641.1| transcription antitermination protein NusB [Parvularcula bermudensis HTCC2503] gi|303299900|gb|ADM09499.1| transcription antitermination protein NusB [Parvularcula bermudensis HTCC2503] Length = 166 Score = 104 bits (260), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 55/141 (39%), Positives = 85/141 (60%), Gaps = 5/141 (3%) Query: 18 IARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVM 77 +ARL AVQALYQ++ G +I E+ +R E+D +++ D E+F I+ GV+ Sbjct: 18 MARLGAVQALYQMEHAGTGVEAVIREFVDHRLGG--EMDGSALH-EADDEFFAAIVRGVV 74 Query: 78 DRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDF 137 + ++ ID I L E W+ RLD +ILRAG+ EL+ +P ++ EYV +A+ F Sbjct: 75 EGQRRIDPFIQRHLAEGWTLKRLDATARAILRAGLFELVSRPDIPWRTVVDEYVELANSF 134 Query: 138 F-YGD-EPKFINAVLDKVSRK 156 F G+ EP+FINAVLD +++ Sbjct: 135 FEKGEAEPRFINAVLDATAKE 155 >gi|99081967|ref|YP_614121.1| NusB antitermination factor [Ruegeria sp. TM1040] gi|99038247|gb|ABF64859.1| NusB antitermination factor [Ruegeria sp. TM1040] Length = 160 Score = 104 bits (260), Expect = 4e-21, Method: Compositional matrix adjust. Identities = 61/158 (38%), Positives = 91/158 (57%), Gaps = 6/158 (3%) Query: 1 MTIQDNKKDLK-LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVES 59 MT +D K K + R ARL AVQAL+Q++ ST ++I E+E +RF A E D Sbjct: 1 MTSKDAPKPGKNKTQARSAARLYAVQALFQMEQSDQSTNKVIVEFEDHRFGATYEGD--- 57 Query: 60 VYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECH 119 Y D + FR +++ ++ + ID + L KW +R+D L ++ RA E +E Sbjct: 58 EYAEGDTKLFRQLVNDAVNHQAKIDQMTDRALVAKWPIARIDPTLRALFRAAGAEFVESD 117 Query: 120 SVPVEVIISEYVCIAHDFFY-GDEPKFINAVLDKVSRK 156 + PV+V+I+EYV IA FF G E F+NAVLD ++R+ Sbjct: 118 T-PVKVVINEYVDIARAFFPEGREASFVNAVLDHMARE 154 >gi|94496077|ref|ZP_01302655.1| NusB antitermination factor [Sphingomonas sp. SKA58] gi|94424256|gb|EAT09279.1| NusB antitermination factor [Sphingomonas sp. SKA58] Length = 148 Score = 104 bits (259), Expect = 5e-21, Method: Compositional matrix adjust. Identities = 57/143 (39%), Positives = 81/143 (56%), Gaps = 3/143 (2%) Query: 13 SHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVI 72 S R ARLAAVQALYQ+++ G ++ E+ +R A E DV Y + +F I Sbjct: 5 SKSRSAARLAAVQALYQLEMEGTPLASLLHEFHQHRLGATIE-DV--TYAQAEESFFDDI 61 Query: 73 IHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVC 132 + GV R+ ID L+++ L+ WS RLD + ILRAG EL+ V +ISEYV Sbjct: 62 VTGVDKRRAEIDALVAARLSSGWSMDRLDKPMRQILRAGTYELLARKDVGTGTVISEYVD 121 Query: 133 IAHDFFYGDEPKFINAVLDKVSR 155 +AH F+ E F+N +LD V++ Sbjct: 122 VAHAFYDKREAGFVNGLLDGVAK 144 >gi|217976846|ref|YP_002360993.1| NusB antitermination factor [Methylocella silvestris BL2] gi|217502222|gb|ACK49631.1| NusB antitermination factor [Methylocella silvestris BL2] Length = 154 Score = 104 bits (259), Expect = 5e-21, Method: Compositional matrix adjust. Identities = 59/150 (39%), Positives = 84/150 (56%), Gaps = 6/150 (4%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 R ARLAAVQALYQ+D+ E +E+E++ + E +Y +L +F+ I+ G Sbjct: 7 RSAARLAAVQALYQMDVTDKGLKETCAEFESFWLGGEVE---GQLYKPAELAFFKDILSG 63 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135 V+ + ID I L E W R+D +L +ILRAG EL + VP V I EYV +A Sbjct: 64 VLADQGPIDRAIDQTLVEGWPLVRIDSVLRAILRAGAYELKKRTDVPARVAIKEYVDVAG 123 Query: 136 DFFYGDEPKFINAVLDKVSRK---EEIKRS 162 FF +E +NAVLD ++R+ EE +R Sbjct: 124 AFFEREESGMVNAVLDHLARRFRAEEFERP 153 >gi|307293552|ref|ZP_07573396.1| NusB antitermination factor [Sphingobium chlorophenolicum L-1] gi|306879703|gb|EFN10920.1| NusB antitermination factor [Sphingobium chlorophenolicum L-1] Length = 148 Score = 103 bits (256), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 57/143 (39%), Positives = 82/143 (57%), Gaps = 3/143 (2%) Query: 13 SHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVI 72 S R ARLAAVQALYQ+++ G ++ E+ +R A E DV Y + +F + Sbjct: 5 SKSRSAARLAAVQALYQLEMEGTPIHLLLHEFHQHRLGATIE-DV--TYAQAEESFFDDV 61 Query: 73 IHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVC 132 + GV R++ ID LI++ L++ WS RLD + ILRAG EL+ V ISEYV Sbjct: 62 VQGVDRRREEIDALIAARLSKGWSLERLDKPMRQILRAGTYELLARKDVATGTAISEYVD 121 Query: 133 IAHDFFYGDEPKFINAVLDKVSR 155 +AH F+ E F+N +LD V++ Sbjct: 122 VAHAFYDKREAGFVNGLLDAVAK 144 >gi|182677206|ref|YP_001831352.1| NusB antitermination factor [Beijerinckia indica subsp. indica ATCC 9039] gi|182633089|gb|ACB93863.1| NusB antitermination factor [Beijerinckia indica subsp. indica ATCC 9039] Length = 155 Score = 103 bits (256), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 53/144 (36%), Positives = 85/144 (59%), Gaps = 3/144 (2%) Query: 13 SHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVI 72 + +R ARLAAVQALYQ+++ E ++E+E++ + E D Y ++ +FR I Sbjct: 4 AEQRSAARLAAVQALYQMEVTEKGLNETLAEFESFWIGNEIEGDQ---YKEAEIAFFRDI 60 Query: 73 IHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVC 132 + GV+ ++ ID + L + W R+D ++ +ILRAG EL + +P V I EYV Sbjct: 61 LGGVLADQEPIDRQLDKTLVDGWPLRRVDPVVRAILRAGAYELKKRTDIPARVSIKEYVD 120 Query: 133 IAHDFFYGDEPKFINAVLDKVSRK 156 +A FF +E INAVLD+++R+ Sbjct: 121 VAGAFFGREESGMINAVLDELARR 144 >gi|323138566|ref|ZP_08073634.1| NusB antitermination factor [Methylocystis sp. ATCC 49242] gi|322396200|gb|EFX98733.1| NusB antitermination factor [Methylocystis sp. ATCC 49242] Length = 150 Score = 102 bits (255), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 56/150 (37%), Positives = 86/150 (57%), Gaps = 5/150 (3%) Query: 15 RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESV-YLHVDLEWFRVII 73 +R ARLA VQALYQ+++ G EI +E+E++ ++E V Y ++ +FR ++ Sbjct: 5 QRSAARLAIVQALYQMEVAGKGLNEIFAEFESHWIG----REIEGVQYKPAEVTFFRDVL 60 Query: 74 HGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCI 133 GV+ + ID I L+ W SR++ ++ + LRAG EL VP V+I EYV + Sbjct: 61 QGVLTDQVAIDRQIDRVLSGGWPLSRVEAVMRAALRAGAYELRARKDVPARVVIKEYVDV 120 Query: 134 AHDFFYGDEPKFINAVLDKVSRKEEIKRSG 163 A FF E +NAVLDK++R+E + G Sbjct: 121 AGAFFGPTESGMVNAVLDKIAREERAEELG 150 >gi|259416248|ref|ZP_05740168.1| transcription antitermination factor NusB [Silicibacter sp. TrichCH4B] gi|259347687|gb|EEW59464.1| transcription antitermination factor NusB [Silicibacter sp. TrichCH4B] Length = 164 Score = 102 bits (253), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 56/145 (38%), Positives = 85/145 (58%), Gaps = 5/145 (3%) Query: 13 SHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVI 72 + R ARL AVQAL+Q++ ST ++I E+E +RF A E D Y D + FR + Sbjct: 18 TQARSAARLYAVQALFQMEQSDQSTNKVIVEFEDHRFGATYEGD---EYAEGDTKLFRKL 74 Query: 73 IHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVC 132 ++ ++ + ID + L KW +R+D L ++ RA E +E + PV+V+I+EYV Sbjct: 75 VNDAVNYQAKIDQMTDRALVAKWPIARIDPTLRALFRAAGAEFVESDT-PVKVVINEYVD 133 Query: 133 IAHDFFY-GDEPKFINAVLDKVSRK 156 IA FF G E F+NAVLD ++R+ Sbjct: 134 IARAFFPEGREASFVNAVLDHMARE 158 >gi|294010264|ref|YP_003543724.1| N utilization substance protein B [Sphingobium japonicum UT26S] gi|292673594|dbj|BAI95112.1| N utilization substance protein B [Sphingobium japonicum UT26S] Length = 148 Score = 101 bits (252), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 57/143 (39%), Positives = 81/143 (56%), Gaps = 3/143 (2%) Query: 13 SHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVI 72 S R ARLAAVQALYQ+++ G ++ E+ +R A E DV Y + +F + Sbjct: 5 SKSRSAARLAAVQALYQLEMEGTPLHLLLHEFHQHRLGATIE-DV--TYAQAEESFFDDV 61 Query: 73 IHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVC 132 + GV R++ ID LI + L++ WS RLD + ILRAG EL+ V ISEYV Sbjct: 62 VQGVDRRREEIDALIVARLSKGWSLERLDKPMRQILRAGTYELLARKDVATGTAISEYVD 121 Query: 133 IAHDFFYGDEPKFINAVLDKVSR 155 +AH F+ E F+N +LD V++ Sbjct: 122 VAHAFYDKREAGFVNGLLDAVAK 144 >gi|149185970|ref|ZP_01864285.1| NusB antitermination factor [Erythrobacter sp. SD-21] gi|148830531|gb|EDL48967.1| NusB antitermination factor [Erythrobacter sp. SD-21] Length = 150 Score = 100 bits (249), Expect = 7e-20, Method: Compositional matrix adjust. Identities = 56/144 (38%), Positives = 83/144 (57%), Gaps = 3/144 (2%) Query: 13 SHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVI 72 S R ARL AVQALYQ + G +T ++++E+ +R E + Y D+++F + Sbjct: 7 SQSRSAARLGAVQALYQQQMEGTATAKLLNEFHLHRLGKVIE---DEEYADADVDFFDDL 63 Query: 73 IHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVC 132 + GV R+ ID L+++ L W+ +RLD + ILRAG ELI VP ISEYV Sbjct: 64 VKGVDARRAEIDELLTARLASGWTLARLDKTMLQILRAGSYELIARKDVPKAAAISEYVD 123 Query: 133 IAHDFFYGDEPKFINAVLDKVSRK 156 +A FF E KF+N +LD V+++ Sbjct: 124 VAKAFFDDREAKFVNGILDAVAKE 147 >gi|167647006|ref|YP_001684669.1| transcription antitermination protein NusB [Caulobacter sp. K31] gi|167349436|gb|ABZ72171.1| NusB antitermination factor [Caulobacter sp. K31] Length = 153 Score = 100 bits (249), Expect = 8e-20, Method: Compositional matrix adjust. Identities = 52/140 (37%), Positives = 72/140 (51%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 R +ARLA VQALYQ++ G ++ E+ +RF D + D +F + G Sbjct: 10 RSVARLAVVQALYQMEQSGVGVDAVVREFAEHRFDRDVDGPDTDRLAAADETFFAELAKG 69 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135 V+ + +D I L W RLD ++LR+G EL+ VP EV+I EYV IA Sbjct: 70 VVAHQAAVDQAIVKRLASGWKLERLDATARAVLRSGAYELMHRPDVPTEVVIDEYVEIAK 129 Query: 136 DFFYGDEPKFINAVLDKVSR 155 FF G E FIN LD ++R Sbjct: 130 SFFEGPESGFINGALDAIAR 149 >gi|296532920|ref|ZP_06895581.1| transcription antitermination factor NusB [Roseomonas cervicalis ATCC 49957] gi|296266750|gb|EFH12714.1| transcription antitermination factor NusB [Roseomonas cervicalis ATCC 49957] Length = 170 Score = 100 bits (248), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 47/137 (34%), Positives = 77/137 (56%) Query: 19 ARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMD 78 +R+AA+QAL+Q + G S +I ++ +R D + D+ F ++ GV Sbjct: 25 SRVAAIQALFQSEQSGESAETVIDQFVRFRIGPDAGGFEDGRVPLADVPLFAGVVRGVAR 84 Query: 79 RKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFF 138 + + +D ++ L W+ +RLD +L ++LRA EL P V+I+EY+ IAH FF Sbjct: 85 QSEALDGILQGHLAGDWTVARLDPVLRALLRAAAHELSSGTEPPARVVINEYMDIAHGFF 144 Query: 139 YGDEPKFINAVLDKVSR 155 G+EP+F N VLD ++R Sbjct: 145 SGEEPRFANGVLDAMAR 161 >gi|298291642|ref|YP_003693581.1| NusB antitermination factor [Starkeya novella DSM 506] gi|296928153|gb|ADH88962.1| NusB antitermination factor [Starkeya novella DSM 506] Length = 160 Score = 99.4 bits (246), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 50/141 (35%), Positives = 82/141 (58%), Gaps = 3/141 (2%) Query: 15 RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74 R+ ARL AVQALYQ+D+ +I++++E++ + E D D+ FR I+ Sbjct: 14 RKSAARLNAVQALYQMDVAATPLADILAQFESHWIGHEIEGDE---IASADVNLFRDIVG 70 Query: 75 GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134 GV+ + ID ++ + L + W R++ +L ++LRAG EL E VP V+++EYV +A Sbjct: 71 GVVREQLSIDPVLDAALVKGWPLKRIEAVLRAVLRAGAYELSERPDVPARVVVAEYVNVA 130 Query: 135 HDFFYGDEPKFINAVLDKVSR 155 F +E +NAVLD ++R Sbjct: 131 AAFLDREETGMVNAVLDGLAR 151 >gi|84502770|ref|ZP_01000889.1| transcription antitermination factor NusB [Oceanicola batsensis HTCC2597] gi|84389165|gb|EAQ01963.1| transcription antitermination factor NusB [Oceanicola batsensis HTCC2597] Length = 166 Score = 99.0 bits (245), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 55/151 (36%), Positives = 89/151 (58%), Gaps = 8/151 (5%) Query: 10 LKLSHRRGI---ARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDL 66 L + RR + +RL AVQAL+Q++ IG + +I+E+E +RF A E D + D+ Sbjct: 14 LSGNQRRKMKSASRLYAVQALFQMEAIGQTVERVIAEFEDHRFGAVYEGDEMA---EGDI 70 Query: 67 EWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVI 126 + FR + ++ + ID + L KW +R+D L ++ RA EL++ + P +V+ Sbjct: 71 DLFRATMADAVNYQARIDQMTDRALVAKWPIARIDPTLRALFRAAGAELVQSDT-PPKVV 129 Query: 127 ISEYVCIAHDFFY-GDEPKFINAVLDKVSRK 156 I EYV +A FF G EP+F+NAVLD ++R+ Sbjct: 130 IKEYVDVASAFFPEGREPRFVNAVLDHMARE 160 >gi|89055903|ref|YP_511354.1| NusB antitermination factor [Jannaschia sp. CCS1] gi|88865452|gb|ABD56329.1| NusB antitermination factor [Jannaschia sp. CCS1] Length = 165 Score = 99.0 bits (245), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 56/142 (39%), Positives = 81/142 (57%), Gaps = 5/142 (3%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 R ARL AVQAL+Q++ S E+ E+ET+RF A E D D FR + G Sbjct: 22 RSAARLYAVQALFQMEHSNQSLDEVRQEFETHRFGAVYEGDE---LAEGDPNLFRRTLEG 78 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135 ++R+ ID + L KW R+D L ++ RA EL+E + P +V+I+E+V +A Sbjct: 79 AVERQALIDQMTDRALVAKWPIDRIDPTLRALFRAAGAELVEG-TAPPKVVITEFVDVAR 137 Query: 136 DFFY-GDEPKFINAVLDKVSRK 156 FF G E KF+NAVLD ++R+ Sbjct: 138 AFFPEGKEAKFVNAVLDHMARE 159 >gi|315499922|ref|YP_004088725.1| nusb antitermination factor [Asticcacaulis excentricus CB 48] gi|315417934|gb|ADU14574.1| NusB antitermination factor [Asticcacaulis excentricus CB 48] Length = 177 Score = 98.6 bits (244), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 55/148 (37%), Positives = 80/148 (54%), Gaps = 2/148 (1%) Query: 10 LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELD--VESVYLHVDLE 67 LK R +ARL VQALYQ++I G +I E+ +RF + E + E D Sbjct: 27 LKEKRARTVARLVLVQALYQMEIAGTGVESVIREFADFRFDGNIEGECGEEQRLGTADEA 86 Query: 68 WFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVII 127 +F + ++ + ID+LI+ L W R+D L +ILRAG EL V VEV+I Sbjct: 87 FFADGLRTIVKAQAEIDVLIAERLASNWRLDRIDTTLRAILRAGAWELKFRPDVAVEVVI 146 Query: 128 SEYVCIAHDFFYGDEPKFINAVLDKVSR 155 +EYV IA FF +E +F+N LD +++ Sbjct: 147 NEYVEIAKAFFGNEEARFVNGALDGIAK 174 >gi|254465261|ref|ZP_05078672.1| transcription antitermination factor NusB [Rhodobacterales bacterium Y4I] gi|206686169|gb|EDZ46651.1| transcription antitermination factor NusB [Rhodobacterales bacterium Y4I] Length = 160 Score = 98.6 bits (244), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 57/158 (36%), Positives = 92/158 (58%), Gaps = 6/158 (3%) Query: 1 MTIQDNK-KDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVES 59 M+ QD++ K + R ARL A+QAL+Q++ G + ++I E+E +RF A E D + Sbjct: 1 MSTQDSRPKGNGKNQMRSAARLYALQALFQMEQSGQTFDQVIVEFEDHRFGAVYEGDEMA 60 Query: 60 VYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECH 119 D + FR ++ ++ + ID + L KW +R+D L ++ RA EL + Sbjct: 61 ---EGDTKVFRKLVREAVNYQARIDQMTDRALVAKWPIARIDPTLRALFRAAGAELTQSD 117 Query: 120 SVPVEVIISEYVCIAHDFFY-GDEPKFINAVLDKVSRK 156 + P +V+I+E+V IA FF G EPKF+NAVLD ++R+ Sbjct: 118 T-PPKVVINEFVDIARAFFPEGKEPKFVNAVLDHMARE 154 >gi|89067938|ref|ZP_01155382.1| transcription antitermination factor NusB [Oceanicola granulosus HTCC2516] gi|89046536|gb|EAR52592.1| transcription antitermination factor NusB [Oceanicola granulosus HTCC2516] Length = 156 Score = 98.2 bits (243), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 54/142 (38%), Positives = 79/142 (55%), Gaps = 5/142 (3%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 R +RL AVQAL+Q++ S +++E+E +RF A E E DLE FR + Sbjct: 13 RSASRLYAVQALFQMEAAQQSVDRVMAEFEDHRFGASYE---EGEMAEGDLETFRALCET 69 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135 +D + ID + L KW +R+D L ++ RA E I P +V+I+E+V IA Sbjct: 70 AVDNQAKIDQMTDRALVAKWPIARIDPTLRALFRAAGAEFIR-RDTPPKVVITEFVDIAR 128 Query: 136 DFFY-GDEPKFINAVLDKVSRK 156 FF G EP F+NAVLD ++R+ Sbjct: 129 AFFPEGREPSFVNAVLDHMARE 150 >gi|159044792|ref|YP_001533586.1| N utilization substance protein B-like protein [Dinoroseobacter shibae DFL 12] gi|157912552|gb|ABV93985.1| N utilization substance protein B-like protein [Dinoroseobacter shibae DFL 12] Length = 159 Score = 98.2 bits (243), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 60/155 (38%), Positives = 88/155 (56%), Gaps = 8/155 (5%) Query: 6 NKKDLKLSHRR---GIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYL 62 +K+ KL+ +R ARL AVQAL+Q++ G S +I E+E +RF A E + E Sbjct: 2 SKQSDKLAAKRQAKSAARLYAVQALFQMEAAGQSADSVIREFEDHRFGAIYE-EGEMAEG 60 Query: 63 HVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVP 122 HV L FR + ++ + ID L L W R+D L ++ RA EL+ + P Sbjct: 61 HVTL--FRTTVGEAVNWQAKIDQLTDRALATAWPIDRIDPTLRALFRAAGAELVRADT-P 117 Query: 123 VEVIISEYVCIAHDFFY-GDEPKFINAVLDKVSRK 156 +V+I+EYV +A FF G EPKF+NAVLD ++R+ Sbjct: 118 PKVVINEYVDLARAFFPDGKEPKFVNAVLDHMARE 152 >gi|260425570|ref|ZP_05779550.1| transcription antitermination factor NusB [Citreicella sp. SE45] gi|260423510|gb|EEX16760.1| transcription antitermination factor NusB [Citreicella sp. SE45] Length = 163 Score = 98.2 bits (243), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 58/160 (36%), Positives = 88/160 (55%), Gaps = 7/160 (4%) Query: 1 MTIQDNKKDLKLSHRRGI---ARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDV 57 MT D L + +R + +RL AVQALYQ++ G S + +E+ +RF A+ E V Sbjct: 1 MTNPDTPPALSGNQKRRMKSASRLYAVQALYQMEAAGQSVERVQNEFVDHRFGAEIEEGV 60 Query: 58 ESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIE 117 E L D+ F I ++ + ID + L KW +R+D L ++ RA E ++ Sbjct: 61 E--MLDGDVGLFGRITSAAVNWQAKIDQMTDRALVAKWPIARIDPTLRALFRAAGAEFVD 118 Query: 118 CHSVPVEVIISEYVCIAHDFFY-GDEPKFINAVLDKVSRK 156 + P V+ISEYV +A FF G EP+F+NAVLD ++R+ Sbjct: 119 SDT-PPRVVISEYVDVARAFFPEGREPQFVNAVLDHMARE 157 >gi|84515388|ref|ZP_01002750.1| putative N utilization substance protein B [Loktanella vestfoldensis SKA53] gi|84510671|gb|EAQ07126.1| putative N utilization substance protein B [Loktanella vestfoldensis SKA53] Length = 155 Score = 97.4 bits (241), Expect = 6e-19, Method: Compositional matrix adjust. Identities = 58/159 (36%), Positives = 91/159 (57%), Gaps = 9/159 (5%) Query: 1 MTIQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESV 60 MTI +N++ + AR AVQAL+Q++ G + I+ E+E +RF + DVE V Sbjct: 1 MTISNNQR----RKMKSAARFYAVQALFQMEATGQTVEGIVREFEDHRFGEIID-DVELV 55 Query: 61 YLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHS 120 VD FR ++ +D + ID + L EKW +R+D ++ RA EL++ Sbjct: 56 EGDVDT--FRRMMDRAVDLQASIDQMTDRALVEKWPIARIDPTWRALFRAAGAELLD-KD 112 Query: 121 VPVEVIISEYVCIAHDFFY-GDEPKFINAVLDKVSRKEE 158 P +V+ISE+V +A F + G EPKF+NAVLD ++R+ + Sbjct: 113 TPPKVVISEFVAVAEAFSHDGKEPKFVNAVLDHMARQAQ 151 >gi|254511391|ref|ZP_05123458.1| transcription antitermination factor NusB [Rhodobacteraceae bacterium KLH11] gi|221535102|gb|EEE38090.1| transcription antitermination factor NusB [Rhodobacteraceae bacterium KLH11] Length = 160 Score = 97.4 bits (241), Expect = 6e-19, Method: Compositional matrix adjust. Identities = 55/160 (34%), Positives = 90/160 (56%), Gaps = 6/160 (3%) Query: 1 MTIQDNKKDLKLSHR-RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVES 59 MT D K + + ARL AVQAL+Q++ G +T +++E+ +RF A E + Sbjct: 1 MTKTDAPKPANQKRQMKSAARLYAVQALFQMEQSGQTTEAVVTEFLDHRFGAVYEGEE-- 58 Query: 60 VYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECH 119 L D+ FR ++ ++ + ID + L KW +R+D L ++ RA EL + Sbjct: 59 -MLDGDISVFRALVDNAVNYQAPIDQMTDRALVAKWPIARIDPTLRAVFRAAGAELTQSD 117 Query: 120 SVPVEVIISEYVCIAHDFFY-GDEPKFINAVLDKVSRKEE 158 + P +V+I+E+V +A FF G EPKF+NAVLD ++R+ + Sbjct: 118 T-PPKVVITEFVDVARAFFPEGKEPKFVNAVLDHMAREAQ 156 >gi|260434089|ref|ZP_05788060.1| transcription antitermination factor NusB [Silicibacter lacuscaerulensis ITI-1157] gi|260417917|gb|EEX11176.1| transcription antitermination factor NusB [Silicibacter lacuscaerulensis ITI-1157] Length = 160 Score = 97.1 bits (240), Expect = 8e-19, Method: Compositional matrix adjust. Identities = 57/158 (36%), Positives = 88/158 (55%), Gaps = 6/158 (3%) Query: 1 MTIQDNKKDLKLSH-RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVES 59 MT D K + ARL AVQAL+Q++ G +T ++++E+ +RF A E D Sbjct: 1 MTQTDTPKPANRKRLMKSAARLYAVQALFQMEQSGQTTEQVVNEFLDHRFGAVYEGDE-- 58 Query: 60 VYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECH 119 L D FR ++ ++ + ID + L KW SR+D L ++ RA EL + Sbjct: 59 -MLEGDSALFRKLVDDAVNYQAPIDQMTDRALVAKWPISRIDPTLRALFRAAGAELSQSD 117 Query: 120 SVPVEVIISEYVCIAHDFFY-GDEPKFINAVLDKVSRK 156 + P +V+I+E+V +A FF G EPKF+NAVLD ++R+ Sbjct: 118 T-PPKVVITEFVDVARAFFPEGKEPKFVNAVLDHMARE 154 >gi|255263487|ref|ZP_05342829.1| transcription antitermination factor NusB [Thalassiobium sp. R2A62] gi|255105822|gb|EET48496.1| transcription antitermination factor NusB [Thalassiobium sp. R2A62] Length = 157 Score = 96.7 bits (239), Expect = 9e-19, Method: Compositional matrix adjust. Identities = 54/144 (37%), Positives = 82/144 (56%), Gaps = 5/144 (3%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 R ARL A QALYQ+++ G + + E+ETYRF + D D+E FR ++ Sbjct: 14 RSAARLFATQALYQMELSGQTVDAVRQEFETYRFGEVIDGDE---LAEGDVETFRDLLEN 70 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135 ++ + ID + L KW+ R+D L ++ RA EL + S P +V+I E+V +A Sbjct: 71 AVNHQALIDQMTDRALVAKWAIDRIDPTLRALFRAAGAELTQS-STPPKVVIVEFVDVAV 129 Query: 136 DFFY-GDEPKFINAVLDKVSRKEE 158 FF G EPKF+NAVLD ++R+ + Sbjct: 130 AFFPEGKEPKFVNAVLDHMAREAQ 153 >gi|114767590|ref|ZP_01446325.1| transcription antitermination factor NusB [Pelagibaca bermudensis HTCC2601] gi|114540368|gb|EAU43457.1| transcription antitermination factor NusB [Roseovarius sp. HTCC2601] Length = 163 Score = 96.7 bits (239), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 58/160 (36%), Positives = 89/160 (55%), Gaps = 7/160 (4%) Query: 1 MTIQDNKKDLKLSHRRGI---ARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDV 57 MT D L + +R + +RL AVQALYQ++ + ++ E+ YRF A+ + V Sbjct: 1 MTTPDTPPALSGNQKRRMKSASRLYAVQALYQMEAGDVAVEKVQREFVDYRFGAEIDEGV 60 Query: 58 ESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIE 117 E V V L F I ++ + ID + L KW +R+D L ++ RA EL++ Sbjct: 61 EMVEGDVTL--FGKITSSAVNWQAKIDQMTDRALVAKWPIARIDPTLRALFRAAGAELVD 118 Query: 118 CHSVPVEVIISEYVCIAHDFFY-GDEPKFINAVLDKVSRK 156 + P +V+ISEYV +A FF G EP+F+NAVLD ++R+ Sbjct: 119 SDTPP-KVVISEYVEVASAFFPEGREPRFVNAVLDHMARE 157 >gi|126733189|ref|ZP_01748936.1| putative N utilization substance protein B [Roseobacter sp. CCS2] gi|126716055|gb|EBA12919.1| putative N utilization substance protein B [Roseobacter sp. CCS2] Length = 159 Score = 96.3 bits (238), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 55/159 (34%), Positives = 86/159 (54%), Gaps = 9/159 (5%) Query: 1 MTIQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESV 60 MT+ +NKK + ARL AVQAL+Q++ G + ++ E+E +R A + E Sbjct: 1 MTLSNNKK----RKMKSAARLYAVQALFQMEASGQTVDQVTREFEDHRLGAVYD---EGE 53 Query: 61 YLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHS 120 D++ FR ++ +D + ID L L KW +R+D ++ RA EL Sbjct: 54 MTEGDVDTFRALMEKAVDDQAAIDQLTDRALVAKWPIARIDPTWRALFRAAGAELT-LQD 112 Query: 121 VPVEVIISEYVCIAHDFFY-GDEPKFINAVLDKVSRKEE 158 P +V+ISE+V +A F G EPKF+NAVLD ++R+ + Sbjct: 113 TPPKVVISEFVSVAEAFSADGKEPKFVNAVLDHMAREAQ 151 >gi|144897828|emb|CAM74692.1| NusB antitermination factor [Magnetospirillum gryphiswaldense MSR-1] Length = 160 Score = 95.1 bits (235), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 51/149 (34%), Positives = 79/149 (53%), Gaps = 5/149 (3%) Query: 7 KKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDL 66 +K + RR ARLAAVQALY ++I G + + + E+ R D+E D+ Sbjct: 2 RKPNPGATRRSAARLAAVQALYSMEITGVTAEQALVEF---RQRLDSE--PRGKLAEPDM 56 Query: 67 EWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVI 126 + +++ G +D I+ L W+ RL+ +L +ILRAG EL P V Sbjct: 57 DLVALLVRGASFDGGDLDAHIARGLARDWTVDRLESVLRAILRAGAYELKARPQTPARVA 116 Query: 127 ISEYVCIAHDFFYGDEPKFINAVLDKVSR 155 I+EYV + H F+ G EP +NAV+D+++R Sbjct: 117 ITEYVDVTHAFYSGPEPGLVNAVMDRMAR 145 >gi|329850578|ref|ZP_08265423.1| transcription antitermination factor NusB [Asticcacaulis biprosthecum C19] gi|328840893|gb|EGF90464.1| transcription antitermination factor NusB [Asticcacaulis biprosthecum C19] Length = 173 Score = 95.1 bits (235), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 55/140 (39%), Positives = 79/140 (56%), Gaps = 3/140 (2%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 R +ARL VQALYQ++I G ++ E+ +RF DT+L+ E + D +F Sbjct: 33 RTVARLVLVQALYQMEITGTGVETVVREFADHRF--DTDLEGEPLA-QADEAFFGEGARA 89 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135 V+ + ID LI+ L W RLD + +ILRAG EL + +EV+I+EYV IA Sbjct: 90 VVREQGVIDPLITHRLASGWRLERLDTTVRAILRAGTWELKFRPDIGLEVVINEYVEIAR 149 Query: 136 DFFYGDEPKFINAVLDKVSR 155 FF E +F+NA LD V++ Sbjct: 150 AFFGETEARFVNAALDGVAK 169 >gi|254460442|ref|ZP_05073858.1| transcription antitermination factor NusB [Rhodobacterales bacterium HTCC2083] gi|206677031|gb|EDZ41518.1| transcription antitermination factor NusB [Rhodobacteraceae bacterium HTCC2083] Length = 157 Score = 94.4 bits (233), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 56/142 (39%), Positives = 83/142 (58%), Gaps = 5/142 (3%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 + AR AVQALYQ+++ G +T +II E+ +RF A E D+E V VDL F +++ Sbjct: 14 KSAARFYAVQALYQMEVSGQTTDKIIVEFLDHRFGAVYE-DMEFVEGDVDL--FSSLVND 70 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135 ++ + ID + L KW +R+D L + RA EL+ P +V+I E+V IA Sbjct: 71 AVNHQAQIDQMTDRALVAKWPIARIDPTLRGLFRAAGAELV-ASDTPPKVVIKEFVDIAA 129 Query: 136 DFFY-GDEPKFINAVLDKVSRK 156 FF G E +F+NAVLD V+R+ Sbjct: 130 AFFPEGKESRFVNAVLDHVARE 151 >gi|254452714|ref|ZP_05066151.1| transcription antitermination factor NusB [Octadecabacter antarcticus 238] gi|198267120|gb|EDY91390.1| transcription antitermination factor NusB [Octadecabacter antarcticus 238] Length = 146 Score = 93.2 bits (230), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 52/142 (36%), Positives = 80/142 (56%), Gaps = 5/142 (3%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 + +RL AVQAL+Q++ + + E+E +RF A E D D+ FR+++ Sbjct: 2 KSASRLYAVQALFQMEHSSQTIESVTREFEDHRFGAVYEGDE---LAEGDVNLFRMLVET 58 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135 ++ + ID + L KW R+D L ++ RA +ELI P +V ISEYV +A Sbjct: 59 AVNEQTKIDQMTDRALVAKWPLGRIDPTLRALFRAAGVELI-GRDTPPKVAISEYVDVAK 117 Query: 136 DFF-YGDEPKFINAVLDKVSRK 156 FF G+EPKF+NAVLD ++R+ Sbjct: 118 AFFDGGEEPKFVNAVLDHMARQ 139 >gi|260575720|ref|ZP_05843717.1| NusB antitermination factor [Rhodobacter sp. SW2] gi|259022118|gb|EEW25417.1| NusB antitermination factor [Rhodobacter sp. SW2] Length = 157 Score = 93.2 bits (230), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 55/156 (35%), Positives = 90/156 (57%), Gaps = 14/156 (8%) Query: 4 QDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCA--DTELDVESVY 61 + +KK +K + ARL AVQAL+Q+++ G + + E+ET+RF A D + E Sbjct: 7 KPDKKQMKSA-----ARLYAVQALFQMEVSGQTVEAVQREFETHRFGAVYDGDEMAEGDV 61 Query: 62 LHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSV 121 +H FR ++ ++ + ID L L KW SR+D +L ++ RA E++E + Sbjct: 62 VH-----FRALVGHAVNWQAKIDQLTDRALVAKWPISRIDPVLRALFRAAGAEMLEMPT- 115 Query: 122 PVEVIISEYVCIAHDFFY-GDEPKFINAVLDKVSRK 156 P +V+I+E+V +A FF G E F+NAVLD ++R+ Sbjct: 116 PPKVVITEFVDVAKAFFPEGKEASFVNAVLDHMARE 151 >gi|163738657|ref|ZP_02146071.1| NusB antitermination factor [Phaeobacter gallaeciensis BS107] gi|163742958|ref|ZP_02150341.1| putative N utilization substance protein B [Phaeobacter gallaeciensis 2.10] gi|161383641|gb|EDQ08027.1| putative N utilization substance protein B [Phaeobacter gallaeciensis 2.10] gi|161387985|gb|EDQ12340.1| NusB antitermination factor [Phaeobacter gallaeciensis BS107] Length = 163 Score = 92.8 bits (229), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 51/142 (35%), Positives = 81/142 (57%), Gaps = 5/142 (3%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 + +RL AVQAL+Q++ + ++I E+E +RF A + D D + FR +I G Sbjct: 20 KSASRLYAVQALFQMEHSNLTFDKVIVEFEDHRFGAVYDGDE---MAEGDTKSFRKLIEG 76 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135 ++ + ID + L KW +R+D L ++ RA E + P +V+I+E+V IA Sbjct: 77 AVNEQAKIDQMTDRALVAKWPIARIDPTLRALFRAAGAEFL-AGKTPPKVVINEFVDIAR 135 Query: 136 DFFY-GDEPKFINAVLDKVSRK 156 FF G EPKF+NAVLD ++R+ Sbjct: 136 AFFPEGKEPKFVNAVLDHMARE 157 >gi|310816559|ref|YP_003964523.1| putative N utilization substance protein B [Ketogulonicigenium vulgare Y25] gi|308755294|gb|ADO43223.1| putative N utilization substance protein B [Ketogulonicigenium vulgare Y25] Length = 147 Score = 92.8 bits (229), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 50/142 (35%), Positives = 80/142 (56%), Gaps = 5/142 (3%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 R ARL AVQAL+Q++ G + T + E+E +RF A +D E + + D+ FR ++ Sbjct: 2 RSAARLYAVQALFQMEAAGVTVTRVTREFEDFRFGA--SIDGEEL-VEGDVTLFRTLMQD 58 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135 ++ + ID + L KW +R+D L ++ RA E + P +V+I E++ IA Sbjct: 59 AVNNQAQIDQMTDRALVSKWPIARIDPTLRALFRAAGAEFM-LKETPAKVVIVEFMDIAS 117 Query: 136 DFFY-GDEPKFINAVLDKVSRK 156 F EPKF+NAVLD ++R+ Sbjct: 118 AFSADPKEPKFVNAVLDHMARE 139 >gi|126727899|ref|ZP_01743727.1| transcription antitermination factor NusB [Rhodobacterales bacterium HTCC2150] gi|126702840|gb|EBA01945.1| transcription antitermination factor NusB [Rhodobacterales bacterium HTCC2150] Length = 155 Score = 92.4 bits (228), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 53/157 (33%), Positives = 85/157 (54%), Gaps = 9/157 (5%) Query: 1 MTIQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESV 60 MT+ N+ + + AR AVQAL+Q++ G ++ISE+E +RF A + D Sbjct: 1 MTVSGNQ----MRKMKSAARFFAVQALFQLEHSGQEVDKVISEFEEHRFGATFDGD---E 53 Query: 61 YLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHS 120 D F +++ G ++ + ID + L KW R+D L ++ RA EL E + Sbjct: 54 MQEGDPATFGLLMRGAVNLQAKIDQMTDRALVVKWPLGRIDPTLRALFRAAGAELTEGET 113 Query: 121 VPVEVIISEYVCIAHDFFY-GDEPKFINAVLDKVSRK 156 P +V+I+E+V +A FF EPKF+N VLD ++R+ Sbjct: 114 -PPKVVINEFVEVARAFFPETKEPKFVNGVLDHMARE 149 >gi|254440807|ref|ZP_05054300.1| transcription antitermination factor NusB [Octadecabacter antarcticus 307] gi|198250885|gb|EDY75200.1| transcription antitermination factor NusB [Octadecabacter antarcticus 307] Length = 146 Score = 92.4 bits (228), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 50/142 (35%), Positives = 81/142 (57%), Gaps = 5/142 (3%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 + +RL AVQAL+Q++ S + E+E +RF A E + + D+ FR+++ Sbjct: 2 KSASRLYAVQALFQMEHSNQSIESVTREFENHRFGAIYEGNEMA---EGDVALFRILVET 58 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135 ++ + ID + L KW +R+D L ++ RA +EL+ P V I+EYV +A Sbjct: 59 AVNEQSKIDQMTDRALVAKWPLARIDPTLRALFRAAGVELL-GRDTPPRVAITEYVDVAK 117 Query: 136 DFF-YGDEPKFINAVLDKVSRK 156 FF G+EPKF+NAVLD ++R+ Sbjct: 118 AFFDGGEEPKFVNAVLDHMARQ 139 >gi|254475988|ref|ZP_05089374.1| transcription antitermination factor NusB [Ruegeria sp. R11] gi|214030231|gb|EEB71066.1| transcription antitermination factor NusB [Ruegeria sp. R11] Length = 163 Score = 92.4 bits (228), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 52/142 (36%), Positives = 79/142 (55%), Gaps = 5/142 (3%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 R +RL AVQAL+Q++ + +I E+E +RF A E + D + FR ++ Sbjct: 20 RSASRLYAVQALFQMEHSNLTLDRVIVEFEDFRFGAVYE---DGEMAEGDSKVFRKLVED 76 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135 + + ID + L KW R+D L ++ RA EL E + P +V+I+E+V IA Sbjct: 77 AVSHQARIDQMTDRALVAKWPIGRIDPTLRALFRAAGAELTESKT-PPKVVINEFVDIAR 135 Query: 136 DFFY-GDEPKFINAVLDKVSRK 156 FF G EPKF+NAVLD ++R+ Sbjct: 136 AFFPEGKEPKFVNAVLDHMARE 157 >gi|83949450|ref|ZP_00958183.1| putative N utilization substance protein B [Roseovarius nubinhibens ISM] gi|83837349|gb|EAP76645.1| putative N utilization substance protein B [Roseovarius nubinhibens ISM] Length = 160 Score = 92.0 bits (227), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 56/144 (38%), Positives = 80/144 (55%), Gaps = 8/144 (5%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCA--DTELDVESVYLHVDLEWFRVII 73 R ARL AVQAL+Q++ S E+ E+ +RF A D +D++ D E F +I Sbjct: 16 RSAARLYAVQALFQMEHSSLSVDEVRREFLEFRFGAEFDDGIDMQ----EGDAEHFADVI 71 Query: 74 HGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCI 133 G + + ID + L KW R+D L ++ RA EL++ P +V+I EYV I Sbjct: 72 EGAVQWQAKIDQMTDRALVAKWPIDRIDPTLRALFRAAGAELMQ-EGTPPKVVIVEYVDI 130 Query: 134 AHDFFY-GDEPKFINAVLDKVSRK 156 A FF G EPKF+NAVLD ++R+ Sbjct: 131 AKSFFPEGREPKFVNAVLDFMARE 154 >gi|83593156|ref|YP_426908.1| NusB antitermination factor [Rhodospirillum rubrum ATCC 11170] gi|119390811|sp|Q2RTC4|NUSB_RHORT RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|83576070|gb|ABC22621.1| NusB antitermination factor [Rhodospirillum rubrum ATCC 11170] Length = 185 Score = 92.0 bits (227), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 58/175 (33%), Positives = 84/175 (48%), Gaps = 21/175 (12%) Query: 1 MTIQDNKKDLKLSHRRG------IARLAAVQALYQIDII--------------GCSTTEI 40 M +QD+K R G ARLAAVQALY +D+ G Sbjct: 1 MALQDDKPGSAPKERSGRQIRSSAARLAAVQALYVLDLAEDARVDQVVLDFMSGSMGGMA 60 Query: 41 ISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRL 100 I E D ++ ++ D E F +++ G +D +I + L+ W + RL Sbjct: 61 IVEVADPEGIFDPTEEIAALE-PPDGELFAMLVRGAHAELARLDEVIGASLSADWPWDRL 119 Query: 101 DMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSR 155 + ++ ++LRAGV EL+E P V I EYV IA F+ G EP +NAVLD+V+R Sbjct: 120 EPVVRAVLRAGVYELLERQRTPPRVAIKEYVDIAAAFYSGAEPGMVNAVLDRVAR 174 >gi|87200933|ref|YP_498190.1| NusB antitermination factor [Novosphingobium aromaticivorans DSM 12444] gi|119390792|sp|Q2G467|NUSB_NOVAD RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|87136614|gb|ABD27356.1| NusB antitermination factor [Novosphingobium aromaticivorans DSM 12444] Length = 148 Score = 90.9 bits (224), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 49/128 (38%), Positives = 73/128 (57%), Gaps = 3/128 (2%) Query: 28 YQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLI 87 YQ D+ ++ E+ +R A+ E DVE Y D+ +F ++ GV R+ ID L+ Sbjct: 21 YQADMEQTPLHLLLDEFHQHRLGAEIE-DVE--YAKADVAFFDDVVKGVDARRDEIDGLL 77 Query: 88 SSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFIN 147 S+ L + W+ RLD + ILRAG EL+ V V +I+EYV +AH FF E KF+N Sbjct: 78 SARLAKGWALPRLDRTMLQILRAGAYELMARRDVNVGTVITEYVDVAHAFFEEREAKFVN 137 Query: 148 AVLDKVSR 155 +LD V++ Sbjct: 138 GLLDAVAK 145 >gi|114327667|ref|YP_744824.1| n utilization substance protein B [Granulibacter bethesdensis CGDNIH1] gi|119390773|sp|Q0BTF1|NUSB_GRABC RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|114315841|gb|ABI61901.1| n utilization substance protein B [Granulibacter bethesdensis CGDNIH1] Length = 163 Score = 90.9 bits (224), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 47/148 (31%), Positives = 80/148 (54%), Gaps = 2/148 (1%) Query: 11 KLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDV--ESVYLHVDLEW 68 + + R +R+AAVQAL+Q + S +I ++ +R A D + ++ Sbjct: 3 RRTRPRTASRVAAVQALFQGEQAQESLEAVIEQFVRFRLGALPGQDGFEDGRIPDAEVPL 62 Query: 69 FRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIIS 128 F I+ + ID L+ + L +W +RLD +L ++LRAG EL P V+I+ Sbjct: 63 FSRIVRAATKEQDVIDPLLITALPAEWPLARLDPVLRALLRAGACELRMKDGPPPRVVIN 122 Query: 129 EYVCIAHDFFYGDEPKFINAVLDKVSRK 156 EY+ IAH FF G+EP+ +N +L+ ++R+ Sbjct: 123 EYLDIAHGFFQGEEPRMVNGILNALARQ 150 >gi|84688074|ref|ZP_01015933.1| putative N utilization substance protein B [Maritimibacter alkaliphilus HTCC2654] gi|84663924|gb|EAQ10429.1| putative N utilization substance protein B [Rhodobacterales bacterium HTCC2654] Length = 168 Score = 90.9 bits (224), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 55/142 (38%), Positives = 81/142 (57%), Gaps = 5/142 (3%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 + +RL AVQAL+Q++ G + E+E +RF A+ E E +VDL FR I+ Sbjct: 25 KSASRLYAVQALFQMEAAGQGYDRVRKEFEDHRFGAEYEE-GEFEEGNVDL--FRAILGE 81 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135 +DR+ ID + L KW +R+D L ++ RA EL+ P +V+I E+V +A Sbjct: 82 AVDRQAKIDQMTDRALVAKWPIARIDPTLRALFRAAGAELV-LGDTPPKVVIVEFVEVAK 140 Query: 136 DFFY-GDEPKFINAVLDKVSRK 156 FF G EPKF NAVLD ++R+ Sbjct: 141 AFFPEGHEPKFTNAVLDHMARE 162 >gi|148261108|ref|YP_001235235.1| NusB antitermination factor [Acidiphilium cryptum JF-5] gi|326404509|ref|YP_004284591.1| transcription antitermination protein NusB [Acidiphilium multivorum AIU301] gi|146402789|gb|ABQ31316.1| NusB antitermination factor [Acidiphilium cryptum JF-5] gi|325051371|dbj|BAJ81709.1| transcription antitermination protein NusB [Acidiphilium multivorum AIU301] Length = 165 Score = 90.9 bits (224), Expect = 6e-17, Method: Compositional matrix adjust. Identities = 52/145 (35%), Positives = 78/145 (53%), Gaps = 2/145 (1%) Query: 13 SHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFC-ADTELDVESVYLHV-DLEWFR 70 + R +AR AAVQALYQ + G + +I ++ +RF L VE + D+ F Sbjct: 8 ARPRTLARAAAVQALYQCEHAGETAETVIDQFVRHRFGRMAGMLGVEEGEVPPPDVPLFS 67 Query: 71 VIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEY 130 I+ ++ +D LI+ L E W RLD +L ++LRA EL P V+I+EY Sbjct: 68 RIVRTATAQQDVVDPLIAGVLPEAWPMPRLDPVLRALLRAAGAELWMTDGPPARVVINEY 127 Query: 131 VCIAHDFFYGDEPKFINAVLDKVSR 155 + +AH F GD + NAVLD+++R Sbjct: 128 LDVAHGFLEGDAVQMGNAVLDRIAR 152 >gi|149202343|ref|ZP_01879316.1| transcription antitermination factor NusB [Roseovarius sp. TM1035] gi|149144441|gb|EDM32472.1| transcription antitermination factor NusB [Roseovarius sp. TM1035] Length = 160 Score = 89.7 bits (221), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 51/142 (35%), Positives = 82/142 (57%), Gaps = 4/142 (2%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 + ARL AVQAL+Q++ G S+ + E+ +RF A+ + V+ VDL FR ++ Sbjct: 16 KSAARLYAVQALFQMEHSGQSSDTVSEEFLDFRFGAEVDEGVDMAEGDVDL--FRKLLDD 73 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135 + + ID + L KW +R+D L ++ RA EL++ + P +V+I EYV +A Sbjct: 74 AVSWQAKIDQMTDRALVAKWPIARIDPTLRALFRAAGAELVQSDT-PPKVVIMEYVDVAK 132 Query: 136 DFFY-GDEPKFINAVLDKVSRK 156 F+ G E KF+NAVLD ++R+ Sbjct: 133 AFYPDGKESKFVNAVLDHMARE 154 >gi|85704976|ref|ZP_01036076.1| transcription antitermination factor NusB [Roseovarius sp. 217] gi|85670298|gb|EAQ25159.1| transcription antitermination factor NusB [Roseovarius sp. 217] Length = 160 Score = 89.7 bits (221), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 51/142 (35%), Positives = 83/142 (58%), Gaps = 4/142 (2%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 + ARL AVQAL+Q++ G ++ + E+ +RF A+ + V+ VDL FR ++ Sbjct: 16 KSAARLYAVQALFQMEHSGQTSDVVREEFLDFRFGAEVDEGVDMAEGDVDL--FRKLLDD 73 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135 ++ + ID + L KW +R+D L ++ RA EL+E + P +V+I EYV +A Sbjct: 74 AVNWQAKIDQMTDRALVAKWPIARIDPTLRALFRAAGAELVESDT-PPKVVIMEYVDVAK 132 Query: 136 DFF-YGDEPKFINAVLDKVSRK 156 F+ G E KF+NAVLD ++R+ Sbjct: 133 AFYPAGKESKFVNAVLDHMARE 154 >gi|83311445|ref|YP_421709.1| transcription termination factor [Magnetospirillum magneticum AMB-1] gi|119390781|sp|Q2W4S5|NUSB_MAGMM RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|82946286|dbj|BAE51150.1| Transcription termination factor [Magnetospirillum magneticum AMB-1] Length = 156 Score = 89.7 bits (221), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 46/141 (32%), Positives = 73/141 (51%), Gaps = 5/141 (3%) Query: 15 RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74 +R ARLAAVQ LYQ+++ G T + + + R + + D ++ Sbjct: 10 KRSAARLAAVQVLYQMEMTGADTERALQDAKDRRAA-----EPKGRMADPDNSLLNQVVR 64 Query: 75 GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134 GV + + ID + L+ W+ RL+ +L +I+RAG EL P V ISE+V +A Sbjct: 65 GVSAQLEDIDGHVGRALSGDWTVERLEAVLRAIVRAGAWELSARPQTPARVCISEWVDVA 124 Query: 135 HDFFYGDEPKFINAVLDKVSR 155 H F+ G EP +N VLD +++ Sbjct: 125 HAFYSGPEPGLVNGVLDHLAQ 145 >gi|23014664|ref|ZP_00054469.1| COG0781: Transcription termination factor [Magnetospirillum magnetotacticum MS-1] Length = 156 Score = 88.6 bits (218), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 48/152 (31%), Positives = 76/152 (50%), Gaps = 8/152 (5%) Query: 15 RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74 +R ARLAAVQ LYQ+++ G + + + R + + D ++ Sbjct: 10 KRSAARLAAVQVLYQMEMTGTDCERALQDAKDRRAA-----EPKGRMADPDSSLLNQVVR 64 Query: 75 GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134 GV + + ID + L+ W+ RL+ +L +I+R G EL P V ISE+V +A Sbjct: 65 GVSAQLEDIDRHVGGALSGDWTVERLEAVLRAIIRGGAWELSARPQTPARVCISEWVDVA 124 Query: 135 HDFFYGDEPKFINAVLDKVS---RKEEIKRSG 163 H F+ G EP +NAVLD ++ R E+ + G Sbjct: 125 HAFYSGPEPGLVNAVLDHLAQTLRGGEMGKGG 156 >gi|6580774|gb|AAF18280.1| N-utilization substance protein B [Zymomonas mobilis subsp. mobilis ZM4] Length = 129 Score = 88.2 bits (217), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 44/117 (37%), Positives = 67/117 (57%), Gaps = 3/117 (2%) Query: 40 IISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSR 99 ++ E+ YR A E ++ Y + +F I+ GV R + ID +IS L+E+WS R Sbjct: 9 LLDEFHQYRLGATIE---DATYTKAEPSFFDDIVRGVGTRCEEIDRVISENLSERWSLDR 65 Query: 100 LDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRK 156 LD + ILRAG EL+ VP +ISEY+ +A+ F+ E F+N +LD V++K Sbjct: 66 LDRPMRQILRAGTYELLARPDVPTATVISEYIDVANAFYDRQEKNFVNGLLDTVAKK 122 >gi|126738747|ref|ZP_01754443.1| transcription antitermination factor NusB [Roseobacter sp. SK209-2-6] gi|126719928|gb|EBA16635.1| transcription antitermination factor NusB [Roseobacter sp. SK209-2-6] Length = 160 Score = 87.8 bits (216), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 49/142 (34%), Positives = 81/142 (57%), Gaps = 5/142 (3%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 + +RL AVQAL+Q++ G + +II E+E +RF A + D D + FR ++ Sbjct: 17 KSASRLYAVQALFQMEQSGQTFDQIIVEFEDHRFGAVYDGDE---MAEGDTKLFRKLVED 73 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135 ++ + +D + L KW +R+D L ++ RA EL + + P +V+I+E+V IA Sbjct: 74 AVNYQAPVDQMTDRALVAKWPIARIDPTLRALFRAAGAELTQSET-PPKVVINEFVDIAR 132 Query: 136 DFFY-GDEPKFINAVLDKVSRK 156 FF G E KF+N VLD ++R+ Sbjct: 133 AFFPEGKESKFVNGVLDHMARE 154 >gi|86137878|ref|ZP_01056454.1| transcription antitermination factor NusB [Roseobacter sp. MED193] gi|85825470|gb|EAQ45669.1| transcription antitermination factor NusB [Roseobacter sp. MED193] Length = 160 Score = 87.4 bits (215), Expect = 6e-16, Method: Compositional matrix adjust. Identities = 49/142 (34%), Positives = 81/142 (57%), Gaps = 5/142 (3%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 + ARL AVQAL+Q++ + ++I+E+E +RF A E + D FR ++ Sbjct: 17 KSAARLYAVQALFQMEHSDLTFDKVIAEFENHRFGAVYE---DGEMAEGDTGLFRKLLKD 73 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135 ++ + ID + L KW +R+D L ++ RA E + ++ P +V+I+E+V IA Sbjct: 74 AVNFQAPIDQMTDRALVAKWPIARIDPTLRALFRAAGAEFTQSNT-PPKVVINEFVDIAR 132 Query: 136 DFFY-GDEPKFINAVLDKVSRK 156 FF G E KF+NAVLD ++R+ Sbjct: 133 AFFPEGKEAKFVNAVLDHMARE 154 >gi|294678589|ref|YP_003579204.1| transcription antitermination factor NusB [Rhodobacter capsulatus SB 1003] gi|294477409|gb|ADE86797.1| transcription antitermination factor NusB [Rhodobacter capsulatus SB 1003] Length = 165 Score = 86.7 bits (213), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 49/142 (34%), Positives = 78/142 (54%), Gaps = 4/142 (2%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 R ARL AVQAL+Q++ G + E+E++RF T+ E DL FR ++ Sbjct: 21 RSAARLYAVQALFQMEAAGQGVDRVAREFESFRFGMVTDEGEELAEGDYDL--FRRLLDD 78 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135 + + ID L W R+D +L ++ RA E++ + P++V+I+E+V +A Sbjct: 79 AVMWQAKIDQTTDRALVATWPIERIDPVLRALFRAAGAEMVNP-ATPIKVVINEFVEVAR 137 Query: 136 DFFY-GDEPKFINAVLDKVSRK 156 FF G E KF+NAVLD ++R+ Sbjct: 138 AFFPEGKETKFVNAVLDHMARE 159 >gi|163793217|ref|ZP_02187193.1| NusB antitermination factor [alpha proteobacterium BAL199] gi|159181863|gb|EDP66375.1| NusB antitermination factor [alpha proteobacterium BAL199] Length = 139 Score = 85.5 bits (210), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 43/126 (34%), Positives = 68/126 (53%), Gaps = 3/126 (2%) Query: 30 IDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISS 89 +++ G S E++ E+ RF E D ++F ++ GV +D +++ Sbjct: 1 MEVSGKSGHEVVPEFVGRRFAGLIE---GGDMAPADPKFFERLVLGVAGEMPTLDGMLAD 57 Query: 90 CLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAV 149 CL + RL+++L +I R G EL+ VPV V+ISEYV + H FF G EP +N V Sbjct: 58 CLQPEGHLERLEVVLRAIFRLGTYELLSVDDVPVRVVISEYVDLTHAFFAGREPGLVNGV 117 Query: 150 LDKVSR 155 LDK++R Sbjct: 118 LDKIAR 123 >gi|149181858|ref|ZP_01860347.1| transcription antitermination protein NusB [Bacillus sp. SG-1] gi|148850397|gb|EDL64558.1| transcription antitermination protein NusB [Bacillus sp. SG-1] Length = 133 Score = 85.5 bits (210), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 56/143 (39%), Positives = 79/143 (55%), Gaps = 22/143 (15%) Query: 15 RRGIARLAAVQALYQIDIIGCSTTEIISE-YETYRFCADTELDVESVYLHVDLEWFRVII 73 +R AR A+QAL+Q+D+ G + E ++ YE DT D E+ ++ Sbjct: 2 KRRTAREKALQALFQMDMSGMTADEALTNVYE------DTPSD----------EYLENLV 45 Query: 74 HGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCI 133 +G + K+ ID LI L EKWSF RL + +ILR V EL+E VP +V+I+E + I Sbjct: 46 NGATENKEKIDGLIKENL-EKWSFDRLAKVDRNILRVAVYELLEADDVPSKVVINEAIEI 104 Query: 134 AHDFFYGDEP--KFINAVLDKVS 154 A YGD+ KFIN VL KV+ Sbjct: 105 AK--TYGDDQSGKFINGVLSKVN 125 >gi|110679100|ref|YP_682107.1| N utilization substance protein B-like protein, putative [Roseobacter denitrificans OCh 114] gi|109455216|gb|ABG31421.1| N utilization substance protein B-like protein, putative [Roseobacter denitrificans OCh 114] Length = 145 Score = 85.5 bits (210), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 50/142 (35%), Positives = 77/142 (54%), Gaps = 5/142 (3%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 + ARL AVQAL+Q++ G + + E+ +RF D + + L D++ F +I G Sbjct: 2 KSAARLYAVQALFQMEHSGQTIEAVRREFLDHRFG--ETYDGQEM-LDGDVDLFGAVIEG 58 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135 ++ + ID + L KW R+D L ++ RA EL P +V+ISEYV +A Sbjct: 59 AVNYQAPIDQMTDRALVAKWPLGRIDPTLRALFRAAGAEL-NGKDTPPKVVISEYVDVAR 117 Query: 136 DFFY-GDEPKFINAVLDKVSRK 156 FF G EPK +N VLD ++R+ Sbjct: 118 AFFEDGKEPKLVNGVLDHMARE 139 >gi|56696640|ref|YP_167001.1| transcription antitermination factor NusB [Ruegeria pomeroyi DSS-3] gi|56678377|gb|AAV95043.1| transcription antitermination factor NusB [Ruegeria pomeroyi DSS-3] Length = 160 Score = 85.5 bits (210), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 52/158 (32%), Positives = 84/158 (53%), Gaps = 6/158 (3%) Query: 1 MTIQDNKKDLKLSHR-RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVES 59 M+ D K + + + ARL AVQAL+Q++ G + ++SE+ +RF A E D Sbjct: 1 MSQSDTPKPVNRKRQMKSAARLYAVQALFQMEHSGQTVESVVSEFLEHRFGAVYEGD--- 57 Query: 60 VYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECH 119 D FR ++ ++ + ID + L KW +R+D L ++ RA E + + Sbjct: 58 ELAEGDAALFRALVGDAVNNQALIDQMTDRALVAKWPIARIDPTLRALFRAAGAEFSQ-N 116 Query: 120 SVPVEVIISEYVCIAHDFFY-GDEPKFINAVLDKVSRK 156 P +V+I+E+V IA FF G E F+NAVLD ++R+ Sbjct: 117 DTPPKVVITEFVDIARAFFPEGRETSFVNAVLDHMARE 154 >gi|258542345|ref|YP_003187778.1| transcription antitermination factor NusB [Acetobacter pasteurianus IFO 3283-01] gi|256633423|dbj|BAH99398.1| transcription antitermination factor NusB [Acetobacter pasteurianus IFO 3283-01] gi|256636482|dbj|BAI02451.1| transcription antitermination factor NusB [Acetobacter pasteurianus IFO 3283-03] gi|256639535|dbj|BAI05497.1| transcription antitermination factor NusB [Acetobacter pasteurianus IFO 3283-07] gi|256642591|dbj|BAI08546.1| transcription antitermination factor NusB [Acetobacter pasteurianus IFO 3283-22] gi|256645646|dbj|BAI11594.1| transcription antitermination factor NusB [Acetobacter pasteurianus IFO 3283-26] gi|256648699|dbj|BAI14640.1| transcription antitermination factor NusB [Acetobacter pasteurianus IFO 3283-32] gi|256651752|dbj|BAI17686.1| transcription antitermination factor NusB [Acetobacter pasteurianus IFO 3283-01-42C] gi|256654743|dbj|BAI20670.1| transcription antitermination factor NusB [Acetobacter pasteurianus IFO 3283-12] Length = 174 Score = 84.7 bits (208), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 58/165 (35%), Positives = 88/165 (53%), Gaps = 9/165 (5%) Query: 3 IQDNKKDLKLSHR-RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVY 61 +QD + LK + R R AR+AAVQAL+QID G +I ++ +RF T LD S Sbjct: 4 LQDEPR-LKGAQRPRTAARVAAVQALFQIDQNGDRPENVIEQFLVHRFG--TTLDGASYE 60 Query: 62 ----LHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIE 117 D + F I+ V + + + L E W +RLD +L ++L A E E Sbjct: 61 DGCIPEADTQLFSHIVRLVTSMRTQVTQEVEKTLPETWPIARLDPVLRALLLAAAAEATE 120 Query: 118 CHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRS 162 + P V+I+EY+ +AH FF GDEP+ +N VLD + ++ +R+ Sbjct: 121 GDA-PAPVLINEYMDVAHAFFSGDEPRLVNGVLDTLFKRLAAERN 164 >gi|126729172|ref|ZP_01744986.1| transcription antitermination factor NusB [Sagittula stellata E-37] gi|126710162|gb|EBA09214.1| transcription antitermination factor NusB [Sagittula stellata E-37] Length = 168 Score = 84.7 bits (208), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 49/142 (34%), Positives = 80/142 (56%), Gaps = 3/142 (2%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 R +RL AVQALYQ++ G ++ E+ +RF A + D + L D+ F +I Sbjct: 23 RSASRLYAVQALYQMEQSGIPVDKVRREFLEFRFGA-VDDDDGTEMLDGDVSLFSHVIEE 81 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135 ++ + +D + L KW +R+D +L ++ RA EL+ + P +V+I EYV +A Sbjct: 82 ALNWQAKVDQMTDRALVAKWPIARIDPVLRALFRAAGAELVATDT-PPKVVIVEYVDVAV 140 Query: 136 DFFY-GDEPKFINAVLDKVSRK 156 F+ G E KF+NAVLD ++R+ Sbjct: 141 AFYPDGKEAKFVNAVLDHMARE 162 >gi|254516860|ref|ZP_05128918.1| transcription antitermination factor NusB [gamma proteobacterium NOR5-3] gi|219674365|gb|EED30733.1| transcription antitermination factor NusB [gamma proteobacterium NOR5-3] Length = 150 Score = 84.3 bits (207), Expect = 5e-15, Method: Compositional matrix adjust. Identities = 54/142 (38%), Positives = 78/142 (54%), Gaps = 13/142 (9%) Query: 15 RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74 RR AR A+QALYQ + G ++I +E+ T D + +V VDLE+F+ +IH Sbjct: 12 RRRKARHYALQALYQWHMAGARPSDIEAEFRT-----DYDFEV------VDLEYFQALIH 60 Query: 75 GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134 GV Q +D L+ L + LD I S+LR G EL + VP V+I+E V +A Sbjct: 61 GVPPLAQELDSLLEPLLDRE--LRELDPIERSLLRMGGFELRDRIDVPYRVVINESVALA 118 Query: 135 HDFFYGDEPKFINAVLDKVSRK 156 F + K+IN VLDK++R+ Sbjct: 119 KKFGAAESYKYINGVLDKLARQ 140 >gi|163733974|ref|ZP_02141415.1| N utilization substance protein B-like protein, putative [Roseobacter litoralis Och 149] gi|161392510|gb|EDQ16838.1| N utilization substance protein B-like protein, putative [Roseobacter litoralis Och 149] Length = 160 Score = 84.3 bits (207), Expect = 5e-15, Method: Compositional matrix adjust. Identities = 53/152 (34%), Positives = 82/152 (53%), Gaps = 8/152 (5%) Query: 9 DLKLSHRRGI---ARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVD 65 +L + RR + ARL AVQAL+Q++ G + + E+ +RF D + + L D Sbjct: 7 NLSGNQRRKMKSAARLYAVQALFQMEHSGQTIEIVRREFLEHRFG--ETYDGQEM-LDGD 63 Query: 66 LEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEV 125 ++ F +I G ++ + ID + L KW R+D L ++ RA EL P +V Sbjct: 64 VDLFDTVIEGAVNFQAPIDQMTDRALVAKWPLGRIDPTLRALFRAAGAEL-NGKDTPPKV 122 Query: 126 IISEYVCIAHDFFY-GDEPKFINAVLDKVSRK 156 +ISEYV +A FF G EPK +N VLD ++R+ Sbjct: 123 VISEYVDVARAFFEDGKEPKLVNGVLDHMARE 154 >gi|332185633|ref|ZP_08387381.1| transcription antitermination factor NusB [Sphingomonas sp. S17] gi|332014611|gb|EGI56668.1| transcription antitermination factor NusB [Sphingomonas sp. S17] Length = 151 Score = 84.3 bits (207), Expect = 5e-15, Method: Compositional matrix adjust. Identities = 51/128 (39%), Positives = 72/128 (56%), Gaps = 3/128 (2%) Query: 28 YQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLI 87 YQ D+ ++ E+ +R A E DVE Y D+++F I+ GV R IDL+I Sbjct: 23 YQHDMEKTPLAALLHEFHNHRIGATIE-DVE--YADADIDFFDDIVKGVHARLGEIDLMI 79 Query: 88 SSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFIN 147 L W+ SRLD + +ILRAG ELI VPV +ISEYV +AH F+ E F+N Sbjct: 80 EGKLASGWTLSRLDRPMKAILRAGTYELIARRDVPVGAVISEYVDVAHAFYEKRESGFVN 139 Query: 148 AVLDKVSR 155 +LD +++ Sbjct: 140 GLLDAIAK 147 >gi|329113506|ref|ZP_08242287.1| N utilization substance protein B-like protein [Acetobacter pomorum DM001] gi|326697331|gb|EGE48991.1| N utilization substance protein B-like protein [Acetobacter pomorum DM001] Length = 174 Score = 84.0 bits (206), Expect = 6e-15, Method: Compositional matrix adjust. Identities = 58/165 (35%), Positives = 88/165 (53%), Gaps = 9/165 (5%) Query: 3 IQDNKKDLKLSHR-RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVY 61 +QD + LK + R R AR+AAVQAL+QID G +I ++ +RF T LD S Sbjct: 4 LQDEPR-LKGAQRPRTAARVAAVQALFQIDQNGDRPENVIEQFLVHRFG--TTLDGASYE 60 Query: 62 ----LHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIE 117 D + F I+ V + + + L E W +RLD +L ++L A E E Sbjct: 61 DGCIPEADTQLFSHIVRLVTSLRTQVTQEVEKTLPETWPIARLDPVLRALLLAAAAEATE 120 Query: 118 CHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRS 162 + P V+I+EY+ +AH FF GDEP+ +N VLD + ++ +R+ Sbjct: 121 GDA-PAPVLINEYMDVAHAFFSGDEPRLVNGVLDTLFKRLAAERN 164 >gi|119384293|ref|YP_915349.1| NusB antitermination factor [Paracoccus denitrificans PD1222] gi|119374060|gb|ABL69653.1| NusB antitermination factor [Paracoccus denitrificans PD1222] Length = 166 Score = 83.6 bits (205), Expect = 8e-15, Method: Compositional matrix adjust. Identities = 49/137 (35%), Positives = 73/137 (53%), Gaps = 3/137 (2%) Query: 21 LAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRK 80 L AVQAL+Q++ G S + E+ +R + E D + V D F I+ + + Sbjct: 26 LYAVQALFQMEAAGQSADRVQREFLNWRIGREDE-DDDIVSAEADQALFTRIVDDAVTWQ 84 Query: 81 QHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY- 139 ID + L KW R+D +L S+ RA EL+ P +V+I+EYV +A FF Sbjct: 85 SKIDQMTDRALVAKWPIDRIDPVLRSVFRAAGAELV-TPKTPPKVVITEYVRLAQTFFAE 143 Query: 140 GDEPKFINAVLDKVSRK 156 G E KF+NAVLD ++R+ Sbjct: 144 GRESKFVNAVLDHMARE 160 >gi|254488295|ref|ZP_05101500.1| transcription antitermination factor NusB [Roseobacter sp. GAI101] gi|214045164|gb|EEB85802.1| transcription antitermination factor NusB [Roseobacter sp. GAI101] Length = 159 Score = 83.6 bits (205), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 48/142 (33%), Positives = 80/142 (56%), Gaps = 5/142 (3%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 + +RL AVQAL+Q++ S + +E+ +RF A + + + D+ F ++ Sbjct: 16 KSASRLYAVQALFQMEHSSQSFDTVRTEFLEHRFGATYD---GAEMIDGDIRHFADVLET 72 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135 ++ + ID + L KW +R+D L ++ RA EL + P +V+I+EYV +A Sbjct: 73 AVNYQAAIDQMTDRALVAKWPIARIDPTLRALFRAAGAELRDT-GTPPKVVITEYVDVAR 131 Query: 136 DFFYG-DEPKFINAVLDKVSRK 156 FF G DEPKF+NAVLD ++R+ Sbjct: 132 AFFEGSDEPKFVNAVLDHMARE 153 >gi|83941142|ref|ZP_00953604.1| transcription antitermination factor NusB [Sulfitobacter sp. EE-36] gi|83846962|gb|EAP84837.1| transcription antitermination factor NusB [Sulfitobacter sp. EE-36] Length = 159 Score = 83.2 bits (204), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 49/142 (34%), Positives = 79/142 (55%), Gaps = 5/142 (3%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 + +RL AVQAL+Q++ S + E+ +RF A D + + + D+ F ++ Sbjct: 16 KSASRLYAVQALFQMEHSSQSFDTVRKEFLEHRFGAS--YDGQEM-IDGDIRHFADLLET 72 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135 ++ + ID + L KW+ +R+D L ++ RA EL P V+I+EYV +A Sbjct: 73 AVNYQAAIDQMTDRALVAKWAIARIDPTLRALFRAAGAEL-RAQETPPRVVINEYVDVAR 131 Query: 136 DFFYG-DEPKFINAVLDKVSRK 156 FF G DEPKF+NAVLD ++R+ Sbjct: 132 AFFEGGDEPKFVNAVLDHMARE 153 >gi|148555686|ref|YP_001263268.1| NusB antitermination factor [Sphingomonas wittichii RW1] gi|148500876|gb|ABQ69130.1| NusB antitermination factor [Sphingomonas wittichii RW1] Length = 151 Score = 83.2 bits (204), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 45/128 (35%), Positives = 67/128 (52%), Gaps = 3/128 (2%) Query: 28 YQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLI 87 YQ ++ G ++ E+ +R A E DVE Y ++ +F ++ GV R+ ID I Sbjct: 23 YQQEMEGTPLAALLDEFHQHRLGATIE-DVE--YAAAEVAFFDDLVKGVDARRAEIDAAI 79 Query: 88 SSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFIN 147 + L W+ RLD + ILR G ELI VP +ISEYV +A F+ E F+N Sbjct: 80 GARLASGWTLERLDRPMRQILRVGAYELIARPDVPTATVISEYVDVADAFYDKKEKGFVN 139 Query: 148 AVLDKVSR 155 VLD +++ Sbjct: 140 GVLDGIAK 147 >gi|288957855|ref|YP_003448196.1| N utilization substance protein B [Azospirillum sp. B510] gi|288910163|dbj|BAI71652.1| N utilization substance protein B [Azospirillum sp. B510] Length = 196 Score = 82.8 bits (203), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 41/131 (31%), Positives = 72/131 (54%), Gaps = 9/131 (6%) Query: 28 YQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLI 87 YQID+ ++ E+ +R + + D ++ D + F I+ G + R+ +D ++ Sbjct: 53 YQIDLAQAPVENVVGEFVAHRLGEEIDGDK---FVAGDPQLFADIVRGAIHRRAEVDGVL 109 Query: 88 SSCLTEKWSFSRLDMILCSILRAGVLEL---IECHSVPVEVIISEYVCIAHDFFYGDEPK 144 + L ++ RL+++L +ILRAG E+ ++ H ++ISEYV +A FF G EP Sbjct: 110 GAALDPRFPLDRLELLLRAILRAGAYEIAVHLDTHP---RILISEYVDVARAFFSGREPA 166 Query: 145 FINAVLDKVSR 155 +N VLD V+R Sbjct: 167 MVNGVLDHVAR 177 >gi|83955701|ref|ZP_00964281.1| transcription antitermination factor NusB [Sulfitobacter sp. NAS-14.1] gi|83839995|gb|EAP79171.1| transcription antitermination factor NusB [Sulfitobacter sp. NAS-14.1] Length = 159 Score = 82.8 bits (203), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 49/142 (34%), Positives = 79/142 (55%), Gaps = 5/142 (3%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 + +RL AVQAL+Q++ S + E+ +RF A D + + + D+ F ++ Sbjct: 16 KSASRLYAVQALFQMEHSSQSFDTVRKEFLEHRFGA--TYDGQEM-IDGDIRHFADLLET 72 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135 ++ + ID + L KW+ +R+D L ++ RA EL P V+I+EYV +A Sbjct: 73 AVNYQAAIDQMTDRALVAKWAIARIDPTLRALFRAAGAEL-RAQETPPRVVINEYVDVAR 131 Query: 136 DFFYG-DEPKFINAVLDKVSRK 156 FF G DEPKF+NAVLD ++R+ Sbjct: 132 AFFEGGDEPKFVNAVLDHMARE 153 >gi|88704433|ref|ZP_01102147.1| N utilization substance protein B [Congregibacter litoralis KT71] gi|88701484|gb|EAQ98589.1| N utilization substance protein B [Congregibacter litoralis KT71] Length = 150 Score = 82.8 bits (203), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 55/146 (37%), Positives = 80/146 (54%), Gaps = 13/146 (8%) Query: 11 KLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFR 70 +L RR AR A+QALYQ + G + T+I +E+ T D + V VDLE+F+ Sbjct: 8 ELVARRRKARHYALQALYQWHMAGATATDIEAEFRT-----DYDFSV------VDLEYFQ 56 Query: 71 VIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEY 130 +IHGV + +D L+ L + LD I S+LR G EL + VP V+I+E Sbjct: 57 ALIHGVPPLVEELDSLLEPLLDRE--IRELDPIERSLLRMGGFELRDRIDVPYRVVINES 114 Query: 131 VCIAHDFFYGDEPKFINAVLDKVSRK 156 V +A F + K+IN VLDK++R+ Sbjct: 115 VALAKKFGAAESYKYINGVLDKLARQ 140 >gi|85373345|ref|YP_457407.1| transcription termination factor [Erythrobacter litoralis HTCC2594] gi|84786428|gb|ABC62610.1| transcription termination factor [Erythrobacter litoralis HTCC2594] Length = 125 Score = 80.5 bits (197), Expect = 7e-14, Method: Compositional matrix adjust. Identities = 44/117 (37%), Positives = 66/117 (56%), Gaps = 2/117 (1%) Query: 40 IISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSR 99 ++ E+ +R + E D E Y ++++F I+ GV R ID L+++ L W+ +R Sbjct: 9 LLDEFHQHRLGREIE-DGEH-YADAEVDFFDDIVSGVDARSDEIDELVTAKLAAGWTLAR 66 Query: 100 LDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRK 156 LD + ILRAG ELI VP ISEYV +A FF E KF+N +LD V+++ Sbjct: 67 LDKTMVQILRAGTYELIARADVPKAAAISEYVDVAKAFFDDREAKFVNGLLDAVAKQ 123 >gi|114800202|ref|YP_760752.1| transcription antitermination factor NusB [Hyphomonas neptunium ATCC 15444] gi|119390777|sp|Q0C0J1|NUSB_HYPNA RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|114740376|gb|ABI78501.1| transcription antitermination factor NusB [Hyphomonas neptunium ATCC 15444] Length = 154 Score = 80.5 bits (197), Expect = 7e-14, Method: Compositional matrix adjust. Identities = 47/133 (35%), Positives = 70/133 (52%), Gaps = 5/133 (3%) Query: 24 VQALYQIDIIGCSTTEIISEYETYRFCADTE-LDVESVYLHVDLEWFRVIIHGVMDRKQH 82 VQALY+++ S I E+ R + VE D + F+ I++ V++ + Sbjct: 22 VQALYEMEQTEKSARATIREFMEDRLGLGPDGTPVEDA----DPDLFKSIVNSVVEHQAK 77 Query: 83 IDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDE 142 ID I + L E W +RLD + ++LRAG E I + +I+SEYV +AHDFF + Sbjct: 78 IDTAILARLAEGWKLTRLDATMRALLRAGAAEFIAHQELSDAIILSEYVSLAHDFFDEGD 137 Query: 143 PKFINAVLDKVSR 155 KF NAVL + R Sbjct: 138 AKFANAVLQNMGR 150 >gi|149916259|ref|ZP_01904780.1| transcription antitermination factor NusB [Roseobacter sp. AzwK-3b] gi|149809919|gb|EDM69770.1| transcription antitermination factor NusB [Roseobacter sp. AzwK-3b] Length = 168 Score = 79.7 bits (195), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 46/142 (32%), Positives = 77/142 (54%), Gaps = 5/142 (3%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 R AR AVQAL+Q+++ + +I E+E +RF A + E + D F ++ Sbjct: 25 RSAARFYAVQALFQMEVSQQTVDAVIREFEDHRFGAHYD---EGDMVEGDPVLFGQLMRD 81 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135 ++ + ID + L KW +R+D L ++ RA E+ + + P +V+I E+V IA Sbjct: 82 AVNWQASIDQMTDRALVAKWPIARIDPTLRALFRAAGAEMTQSDT-PPKVVIMEFVDIAK 140 Query: 136 DFFY-GDEPKFINAVLDKVSRK 156 F+ G E F+NAVLD ++R+ Sbjct: 141 SFYPEGKESSFVNAVLDHMARE 162 >gi|157803349|ref|YP_001491898.1| transcription antitermination protein NusB [Rickettsia canadensis str. McKiel] gi|157784612|gb|ABV73113.1| transcription antitermination protein NusB [Rickettsia canadensis str. McKiel] Length = 178 Score = 79.3 bits (194), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 42/150 (28%), Positives = 84/150 (56%), Gaps = 8/150 (5%) Query: 14 HRRGIARLAAVQALYQIDIIGCSTTE-----IISEYETYRFCADTELDVESVYLHVDLEW 68 +++ IAR+AAVQA+YQ + E ++S Y+ D E++ + + + Sbjct: 29 NKKSIARIAAVQAMYQHILQDNQDMEYILQNVLSFYQNNNSITDLS---ENLKISLSISH 85 Query: 69 FRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIIS 128 F++++ V + +D +I + LT + + ++L ++ R + EL+ CH+ P +V+I+ Sbjct: 86 FKMLVKSVFENFNKLDEMIDNHLTNDKDPAHMPILLRALFRVSICELLFCHTTPAKVVIN 145 Query: 129 EYVCIAHDFFYGDEPKFINAVLDKVSRKEE 158 EY IA+D E F+N+VLDK++++ + Sbjct: 146 EYTDIANDMLNEHEIGFVNSVLDKIAKENK 175 >gi|320322797|gb|EFW78890.1| transcription antitermination protein NusB [Pseudomonas syringae pv. glycinea str. B076] Length = 165 Score = 77.8 bits (190), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 55/169 (32%), Positives = 87/169 (51%), Gaps = 23/169 (13%) Query: 2 TIQDNKKDLK-------LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTE 54 T Q N +D K S +R AR A QALYQ + G + EI +++ Sbjct: 6 TDQFNPRDAKSPEAAKGKSAKRREARQMATQALYQWHMAGHALNEIEAQFR--------- 56 Query: 55 LDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLE 114 V++ + +VD +FR ++HGV K ID +S CL + LD++ ++LR E Sbjct: 57 --VDNDFSNVDGAYFRELLHGVATNKTEIDTALSPCLD--LTIEELDLVELAVLRLSTFE 112 Query: 115 LIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVS---RKEEIK 160 L++ VP V+I+E + +A + D KF+N VLDK++ R+ E+K Sbjct: 113 LLKRIDVPYRVVINEGIELAKVYGSTDGHKFVNGVLDKLAPRLREVEVK 161 >gi|302189354|ref|ZP_07266027.1| transcription antitermination protein NusB [Pseudomonas syringae pv. syringae 642] Length = 165 Score = 77.8 bits (190), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 53/162 (32%), Positives = 82/162 (50%), Gaps = 20/162 (12%) Query: 2 TIQDNKKDLK-------LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTE 54 T Q N +D K S +R AR A QALYQ + G S EI +++ Sbjct: 6 TDQFNPRDAKSPEAAKGKSAKRREARQMATQALYQWHMAGHSLNEIEAQFR--------- 56 Query: 55 LDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLE 114 V++ + +VD +FR ++HGV K ID +S CL + LD + ++LR E Sbjct: 57 --VDNDFSNVDGTYFRELLHGVATNKTEIDTALSPCL--DLTIEELDPVELAVLRLSTFE 112 Query: 115 LIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRK 156 L++ VP V+I+E + +A + D KF+N VLDK++ + Sbjct: 113 LLKRIDVPYRVVINEGIELAKVYGSTDGHKFVNGVLDKLAPR 154 >gi|163747437|ref|ZP_02154789.1| transcription antitermination factor NusB [Oceanibulbus indolifex HEL-45] gi|161379290|gb|EDQ03707.1| transcription antitermination factor NusB [Oceanibulbus indolifex HEL-45] Length = 158 Score = 77.4 bits (189), Expect = 6e-13, Method: Compositional matrix adjust. Identities = 46/142 (32%), Positives = 76/142 (53%), Gaps = 5/142 (3%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 + +RL AVQAL+Q++ + + E+ +RF A E D D++ F ++ Sbjct: 15 KSASRLYAVQALFQMEHSAQTVDVVRHEFIDHRFGAVYEGDE---MQEGDVDHFSRVLED 71 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135 ++ + ID + + + KW+ +R+D L ++ RA E P V+I EYV +AH Sbjct: 72 AVNYQAPIDQMANRAIVAKWAIARIDPTLRALFRAAGAEF-RHDETPPRVVIKEYVDVAH 130 Query: 136 DFFY-GDEPKFINAVLDKVSRK 156 FF G EP F+NAVLD ++R+ Sbjct: 131 AFFPEGREPSFVNAVLDHMARE 152 >gi|220934735|ref|YP_002513634.1| NusB antitermination factor [Thioalkalivibrio sp. HL-EbGR7] gi|219996045|gb|ACL72647.1| NusB antitermination factor [Thioalkalivibrio sp. HL-EbGR7] Length = 149 Score = 77.0 bits (188), Expect = 9e-13, Method: Compositional matrix adjust. Identities = 51/156 (32%), Positives = 81/156 (51%), Gaps = 16/156 (10%) Query: 1 MTIQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESV 60 MT DN++ LSH R +R A+QALYQ + G +I+ +Y D EL+ Sbjct: 1 MTGPDNRR---LSHARRQSRRVAMQALYQWQLTGYHPKDILLQYRE-----DPELE---- 48 Query: 61 YLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHS 120 D ++FR ++ GV ++ +D L++ + S + LD + +ILR EL + Sbjct: 49 --KADADYFRELLLGVTEQVDELDELLAPQMDR--SVAELDPVERAILRLATFELKQRID 104 Query: 121 VPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRK 156 +P V+I+E V + F D KF+N VLDK+ R+ Sbjct: 105 IPYRVVINEAVELTKKFGATDAHKFVNGVLDKLGRQ 140 >gi|157964229|ref|YP_001499053.1| transcription antitermination protein NusB [Rickettsia massiliae MTU5] gi|166918810|sp|A8F0S0|NUSB_RICM5 RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|157844005|gb|ABV84506.1| N utilization substance protein B [Rickettsia massiliae MTU5] Length = 156 Score = 76.6 bits (187), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 42/148 (28%), Positives = 83/148 (56%), Gaps = 8/148 (5%) Query: 14 HRRGIARLAAVQALYQI-----DIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEW 68 +++ IAR+AAVQA+YQ D + ++S Y+ D E++ + + + Sbjct: 7 NKKSIARIAAVQAIYQNILQNNDDMDDIMQNVLSFYQNNNSITDLP---ENLKISLSISH 63 Query: 69 FRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIIS 128 F++++ V + +D +I + LT + + ++L ++LR + EL+ C + P +V+I+ Sbjct: 64 FKMLVKSVFENINKLDEIIDNHLTNDKDPAHMPILLRALLRVSICELLFCPTTPAKVVIN 123 Query: 129 EYVCIAHDFFYGDEPKFINAVLDKVSRK 156 EY IA+D E F+N+VLDK++++ Sbjct: 124 EYTDIANDMLNEHEIGFVNSVLDKIAKE 151 >gi|71737269|ref|YP_276619.1| transcription antitermination protein NusB [Pseudomonas syringae pv. phaseolicola 1448A] gi|257483271|ref|ZP_05637312.1| transcription antitermination protein NusB [Pseudomonas syringae pv. tabaci ATCC 11528] gi|289629163|ref|ZP_06462117.1| transcription antitermination protein NusB [Pseudomonas syringae pv. aesculi str. NCPPB3681] gi|289647768|ref|ZP_06479111.1| transcription antitermination protein NusB [Pseudomonas syringae pv. aesculi str. 2250] gi|298488893|ref|ZP_07006917.1| Transcription termination protein NusB [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|119390796|sp|Q48DC2|NUSB_PSE14 RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|71557822|gb|AAZ37033.1| N utilization substance protein B [Pseudomonas syringae pv. phaseolicola 1448A] gi|298156568|gb|EFH97664.1| Transcription termination protein NusB [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|320330417|gb|EFW86396.1| transcription antitermination protein NusB [Pseudomonas syringae pv. glycinea str. race 4] gi|330869912|gb|EGH04621.1| transcription antitermination protein NusB [Pseudomonas syringae pv. aesculi str. 0893_23] gi|330874033|gb|EGH08182.1| transcription antitermination protein NusB [Pseudomonas syringae pv. glycinea str. race 4] gi|330888050|gb|EGH20711.1| transcription antitermination protein NusB [Pseudomonas syringae pv. mori str. 301020] gi|330988217|gb|EGH86320.1| transcription antitermination protein NusB [Pseudomonas syringae pv. lachrymans str. M301315] gi|331012494|gb|EGH92550.1| transcription antitermination protein NusB [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 165 Score = 76.6 bits (187), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 52/162 (32%), Positives = 82/162 (50%), Gaps = 20/162 (12%) Query: 2 TIQDNKKDLK-------LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTE 54 T Q N +D K S +R AR A QALYQ + G + EI +++ Sbjct: 6 TDQFNPRDAKSPEAAKGKSAKRREARQMATQALYQWHMAGHALNEIEAQFR--------- 56 Query: 55 LDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLE 114 V++ + +VD +FR ++HGV K ID +S CL + LD + ++LR E Sbjct: 57 --VDNDFSNVDGAYFRELLHGVATNKTEIDTALSPCLD--LTIEELDPVELAVLRLSTFE 112 Query: 115 LIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRK 156 L++ VP V+I+E + +A + D KF+N VLDK++ + Sbjct: 113 LLKRIDVPYRVVINEGIELAKVYGSTDGHKFVNGVLDKLAPR 154 >gi|330953122|gb|EGH53382.1| transcription antitermination protein NusB [Pseudomonas syringae Cit 7] Length = 165 Score = 76.3 bits (186), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 52/162 (32%), Positives = 82/162 (50%), Gaps = 20/162 (12%) Query: 2 TIQDNKKDLK-------LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTE 54 T Q N +D K S +R AR A QALYQ + G + EI +++ Sbjct: 6 TDQFNPRDAKSPEAAKGKSAKRREARQMATQALYQRHMAGHALNEIEAQFR--------- 56 Query: 55 LDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLE 114 V++ + +VD +FR ++HGV + ID +S CL + LD I ++LR E Sbjct: 57 --VDNDFSNVDGPYFRELLHGVATNQTEIDAALSPCLD--LTIEELDPIELAVLRLSTFE 112 Query: 115 LIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRK 156 L++ VP V+I+E + +A + D KF+N VLDK++ + Sbjct: 113 LLKRIDVPYRVVINEGIELAKVYGSTDGHKFVNGVLDKLAPR 154 >gi|114771638|ref|ZP_01449042.1| transcription antitermination factor NusB [alpha proteobacterium HTCC2255] gi|114547710|gb|EAU50600.1| transcription antitermination factor NusB [alpha proteobacterium HTCC2255] Length = 151 Score = 76.3 bits (186), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 43/142 (30%), Positives = 76/142 (53%), Gaps = 5/142 (3%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 + +RL AVQAL+Q++ E+ ++ +RF A E + Y+ ++E F ++ Sbjct: 8 KSASRLYAVQALFQMEASEQGMNEVRDQFVNHRFGATLEGEE---YVEGNVELFEQLLFT 64 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135 ++++ ID + L KW R+D L ++ R E I P +V I E+V +A Sbjct: 65 AVNQQAAIDQMTDRALVAKWPIDRIDPTLRALFRTAGAEFI-IDDTPPKVAIVEFVDVAK 123 Query: 136 DFFY-GDEPKFINAVLDKVSRK 156 FF G+E +F+NA+LD ++R+ Sbjct: 124 AFFPDGNETRFVNAILDHMARE 145 >gi|15892127|ref|NP_359841.1| transcription antitermination protein NusB [Rickettsia conorii str. Malish 7] gi|20139047|sp|Q92J65|NUSB_RICCN RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|15619255|gb|AAL02742.1| N utilization substance protein B [Rickettsia conorii str. Malish 7] Length = 156 Score = 76.3 bits (186), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 42/148 (28%), Positives = 83/148 (56%), Gaps = 8/148 (5%) Query: 14 HRRGIARLAAVQALYQI-----DIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEW 68 +++ IAR+AAVQA+YQ D + ++S Y+ D E++ + + + Sbjct: 7 NKKSIARIAAVQAIYQNILQNNDDMDDIMQNVLSFYQNNNAITDLP---ENLKISLSISH 63 Query: 69 FRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIIS 128 F++++ V + +D +I + LT + + ++L ++LR + EL+ C + P +V+I+ Sbjct: 64 FKMLVKSVFENIHKLDEIIDNHLTNDKDPAHMPILLRALLRVSICELLFCPTTPAKVVIN 123 Query: 129 EYVCIAHDFFYGDEPKFINAVLDKVSRK 156 EY IA+D E F+N+VLDK++++ Sbjct: 124 EYTDIANDMLNEHEIGFVNSVLDKIAKE 151 >gi|34580842|ref|ZP_00142322.1| N utilization substance protein B [Rickettsia sibirica 246] gi|229586404|ref|YP_002844905.1| transcription antitermination protein NusB [Rickettsia africae ESF-5] gi|259514889|sp|C3PMK2|NUSB_RICAE RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|28262227|gb|EAA25731.1| N utilization substance protein B [Rickettsia sibirica 246] gi|228021454|gb|ACP53162.1| N utilization substance protein B [Rickettsia africae ESF-5] Length = 156 Score = 76.3 bits (186), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 45/152 (29%), Positives = 85/152 (55%), Gaps = 9/152 (5%) Query: 14 HRRGIARLAAVQALYQI-----DIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEW 68 +++ IAR+AAVQA+YQ D + ++S Y+ D E++ + + + Sbjct: 7 NKKSIARIAAVQAIYQNILQNNDDMDDIMQNVLSFYQNNNSITDLP---ENLKISLSISH 63 Query: 69 FRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIIS 128 F++++ V + +D +I + LT + + ++L ++LR + EL+ C + P +V+I+ Sbjct: 64 FKMLVKSVFENIHKLDEIIDNHLTNDKDPAHMPILLRALLRVSICELLFCPTTPAKVVIN 123 Query: 129 EYVCIAHDFFYGDEPKFINAVLDKVSRKEEIK 160 EY IA+D E F+N+VLDK++ KE I+ Sbjct: 124 EYTDIANDMLNEHEIGFVNSVLDKIA-KEHIR 154 >gi|238650352|ref|YP_002916204.1| transcription antitermination protein NusB [Rickettsia peacockii str. Rustic] gi|259514892|sp|C4K0Q5|NUSB_RICPU RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|238624450|gb|ACR47156.1| transcription antitermination protein NusB [Rickettsia peacockii str. Rustic] Length = 156 Score = 76.3 bits (186), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 42/148 (28%), Positives = 83/148 (56%), Gaps = 8/148 (5%) Query: 14 HRRGIARLAAVQALYQI-----DIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEW 68 +++ IAR+AAVQA+YQ D + ++S Y+ D E++ + + + Sbjct: 7 NKKSIARIAAVQAIYQNILQNNDDMDDIMQNVLSFYQNNNSITDLP---ENLKISLSISH 63 Query: 69 FRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIIS 128 F++++ V + +D +I + LT + + ++L ++LR + EL+ C + P +V+I+ Sbjct: 64 FKMLVKSVFENIHKLDEIIDNHLTNDKDPAHMPILLRALLRVSICELLFCPTTPAKVVIN 123 Query: 129 EYVCIAHDFFYGDEPKFINAVLDKVSRK 156 EY IA+D E F+N+VLDK++++ Sbjct: 124 EYTDIANDMLNEHEIGFVNSVLDKIAKE 151 >gi|189184153|ref|YP_001937938.1| transcription antitermination protein NusB [Orientia tsutsugamushi str. Ikeda] gi|189180924|dbj|BAG40704.1| N utilization substance protein B [Orientia tsutsugamushi str. Ikeda] Length = 162 Score = 75.9 bits (185), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 46/147 (31%), Positives = 75/147 (51%), Gaps = 6/147 (4%) Query: 14 HRRGIARLAAVQALYQIDIIGCSTT------EIISEYETYRFCADTELDVESVYLHVDLE 67 + + I R+A++Q +Y I+ T II+ Y+ D ELD + Sbjct: 9 NTKTITRIASIQGVYSYQILDSEPTIDSIIDFIITYYKDKSSLEDLELDSAIPCFKLRTN 68 Query: 68 WFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVII 127 + +++ +D + ID++ISS L + W L +IL SILR EL S P +V+I Sbjct: 69 YLTKLVNETIDNLETIDMIISSYLADNWQIKDLHLILLSILRVATCELKFFTSTPYKVVI 128 Query: 128 SEYVCIAHDFFYGDEPKFINAVLDKVS 154 +E+ IA DF E F+N++L+K+S Sbjct: 129 NEFTNIASDFVKDSEIGFVNSLLEKIS 155 >gi|153878112|ref|ZP_02004488.1| transcription antitermination protein NusB [Beggiatoa sp. PS] gi|152065424|gb|EDN65512.1| transcription antitermination protein NusB [Beggiatoa sp. PS] Length = 164 Score = 75.5 bits (184), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 44/144 (30%), Positives = 77/144 (53%), Gaps = 3/144 (2%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLH-VDLEWFRVIIH 74 R +AR +QALYQ + G +T I S++ + E + E + D+ +F+ ++H Sbjct: 13 RHVARERVLQALYQWQLTGQNTQLIESQFLDESTLSKEEDESEEPDMQKADIPYFKQLLH 72 Query: 75 GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134 + ++ +D L + L K ++LD + +ILR G EL C +P +V+I+E V +A Sbjct: 73 SIPEKTSDLDKLFAPFLDRK--ITQLDPVELAILRIGSYELTHCQDIPFKVVINEAVELA 130 Query: 135 HDFFYGDEPKFINAVLDKVSRKEE 158 F K+IN VLDK++ ++ Sbjct: 131 KQFGAEQSHKYINGVLDKLAHSQQ 154 >gi|331018230|gb|EGH98286.1| transcription antitermination protein NusB [Pseudomonas syringae pv. lachrymans str. M302278PT] Length = 165 Score = 75.5 bits (184), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 56/169 (33%), Positives = 87/169 (51%), Gaps = 23/169 (13%) Query: 2 TIQDNKKDLK-------LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTE 54 T Q N +D K S +R AR A QALYQ + G + EI +++ Sbjct: 6 TDQFNPRDAKSPEIAKGKSAKRREARQMATQALYQRHMAGHALNEIEAQFR--------- 56 Query: 55 LDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLE 114 V++ + +VD +FR ++HGV + ID ++SCL + LD I +ILR E Sbjct: 57 --VDNDFSNVDGTYFRELLHGVAINQTEIDTALTSCL--DLTIEELDPIELAILRLSTFE 112 Query: 115 LIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVS---RKEEIK 160 L++ VP V+I+E + +A + D KF+N VLDK++ R+ E+K Sbjct: 113 LLKRIDVPYRVVINEGIELAKIYGSTDGHKFVNGVLDKLAPRLREVEVK 161 >gi|213969286|ref|ZP_03397424.1| transcription antitermination protein NusB [Pseudomonas syringae pv. tomato T1] gi|301381790|ref|ZP_07230208.1| transcription antitermination protein NusB [Pseudomonas syringae pv. tomato Max13] gi|302061010|ref|ZP_07252551.1| transcription antitermination protein NusB [Pseudomonas syringae pv. tomato K40] gi|302130538|ref|ZP_07256528.1| transcription antitermination protein NusB [Pseudomonas syringae pv. tomato NCPPB 1108] gi|213925964|gb|EEB59521.1| transcription antitermination protein NusB [Pseudomonas syringae pv. tomato T1] gi|330964918|gb|EGH65178.1| transcription antitermination protein NusB [Pseudomonas syringae pv. actinidiae str. M302091] Length = 165 Score = 75.5 bits (184), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 52/162 (32%), Positives = 82/162 (50%), Gaps = 20/162 (12%) Query: 2 TIQDNKKDLK-------LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTE 54 T Q N +D K S +R AR A QALYQ + G + EI +++ Sbjct: 6 TDQFNPRDAKSPEIAKGKSAKRREARQMATQALYQRHMAGHALNEIEAQFR--------- 56 Query: 55 LDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLE 114 V++ + +VD +FR ++HGV + ID ++ CL + LD I +ILR E Sbjct: 57 --VDNDFSNVDGTYFRELLHGVATNQTEIDTALTPCL--DLTIEELDPIELAILRLSTFE 112 Query: 115 LIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRK 156 L++ VP V+I+E + +A + D KF+N VLDK++ + Sbjct: 113 LLKRIDVPYRVVINEGIELAKVYGSTDGHKFVNGVLDKLAPR 154 >gi|157825345|ref|YP_001493065.1| transcription antitermination protein NusB [Rickettsia akari str. Hartford] gi|166215710|sp|A8GMD2|NUSB_RICAH RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|157799303|gb|ABV74557.1| transcription antitermination protein NusB [Rickettsia akari str. Hartford] Length = 156 Score = 75.5 bits (184), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 42/147 (28%), Positives = 83/147 (56%), Gaps = 2/147 (1%) Query: 14 HRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLE--WFRV 71 +++ IAR+AAVQA+YQ + + I + + D+ + + L + L F++ Sbjct: 7 NKKSIARIAAVQAIYQNILQNNDDMDDIMQNVLSFYRNDSSITNLTGNLKISLSISHFKI 66 Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131 ++ V + +D +I + LT + + ++L ++LRAG+ EL+ + P +V+I+EY Sbjct: 67 LVKSVFENINKLDEIIDNHLTNDKDPAHMPILLRALLRAGIYELLFYPTTPAKVVINEYT 126 Query: 132 CIAHDFFYGDEPKFINAVLDKVSRKEE 158 IA+D G E F+N+VLD +++++ Sbjct: 127 DIANDMLNGYEIGFVNSVLDTIAKEKN 153 >gi|148284859|ref|YP_001248949.1| transcription antitermination protein NusB [Orientia tsutsugamushi str. Boryong] gi|146740298|emb|CAM80679.1| N utilization substance protein B [Orientia tsutsugamushi str. Boryong] Length = 162 Score = 75.5 bits (184), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 46/147 (31%), Positives = 75/147 (51%), Gaps = 6/147 (4%) Query: 14 HRRGIARLAAVQALYQIDIIGCSTT------EIISEYETYRFCADTELDVESVYLHVDLE 67 + + I R+A++Q +Y I+ T II+ Y+ D ELD + Sbjct: 9 NTKTITRIASIQGVYSYQILDSEPTIDSIIDFIITYYKDKSSLEDLELDSAIPCFKLRTN 68 Query: 68 WFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVII 127 + +++ +D + ID++ISS L + W L +IL SILR EL S P +V+I Sbjct: 69 YLTKLVNETIDNLETIDMIISSYLADNWQIKDLHLILLSILRVATCELKFFTSTPYKVVI 128 Query: 128 SEYVCIAHDFFYGDEPKFINAVLDKVS 154 +E+ IA DF E F+N++L+K+S Sbjct: 129 NEFTNIASDFVKESEIGFVNSLLEKIS 155 >gi|325276599|ref|ZP_08142341.1| transcription antitermination protein NusB [Pseudomonas sp. TJI-51] gi|324098278|gb|EGB96382.1| transcription antitermination protein NusB [Pseudomonas sp. TJI-51] Length = 166 Score = 75.1 bits (183), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 53/151 (35%), Positives = 79/151 (52%), Gaps = 16/151 (10%) Query: 13 SHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVI 72 S +R AR A QALYQ + S EI +++ V++ + VD +FR I Sbjct: 25 SAKRREARKLATQALYQWHMAQHSLNEIEAQFR-----------VDNDFTDVDGAYFREI 73 Query: 73 IHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVC 132 +HGV K ID ++ C+T + LD + ++LR ELI+ VP V+I+E V Sbjct: 74 LHGVPAVKDEIDKALAPCMT--IALDELDPVELAVLRLSTWELIKRVDVPYRVVINEGVE 131 Query: 133 IAHDFFYGDEPKFINAVLDKVS---RKEEIK 160 +A F D KF+N VLDK++ R+ E+K Sbjct: 132 LAKVFGATDGHKFVNGVLDKLAPSLREAEVK 162 >gi|330969737|gb|EGH69803.1| transcription antitermination protein NusB [Pseudomonas syringae pv. aceris str. M302273PT] Length = 165 Score = 75.1 bits (183), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 52/162 (32%), Positives = 81/162 (50%), Gaps = 20/162 (12%) Query: 2 TIQDNKKDLK-------LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTE 54 T Q N +D K S +R AR A QALYQ + G + EI +++ Sbjct: 6 TDQFNPRDAKSPEAAKGKSAKRREARQMATQALYQRHMAGHALNEIEAQFR--------- 56 Query: 55 LDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLE 114 V++ + +VD +FR ++HGV + ID + CL + LD I +ILR E Sbjct: 57 --VDNDFSNVDGTYFRELLHGVATNQTEIDTALKPCLD--LTIEELDPIELAILRLSTFE 112 Query: 115 LIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRK 156 L++ VP V+I+E + +A + D KF+N VLDK++ + Sbjct: 113 LLKRIDVPYRVVINEGIELAKVYGSTDGHKFVNGVLDKLAPR 154 >gi|330959944|gb|EGH60204.1| transcription antitermination protein NusB [Pseudomonas syringae pv. maculicola str. ES4326] Length = 165 Score = 75.1 bits (183), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 54/169 (31%), Positives = 86/169 (50%), Gaps = 23/169 (13%) Query: 2 TIQDNKKDLK-------LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTE 54 T Q N +D K S +R AR A QALYQ + G + EI +++ Sbjct: 6 TDQFNPRDAKSPEIAKGKSAKRREARQMATQALYQRHMAGHALNEIEAQFR--------- 56 Query: 55 LDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLE 114 V++ + +VD +FR ++HGV + ID ++ CL + LD I ++LR E Sbjct: 57 --VDNDFSNVDGTYFRELLHGVATNQAEIDAALTPCLD--LTIEELDPIELAVLRLSTFE 112 Query: 115 LIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVS---RKEEIK 160 L++ VP V+I+E + +A + D KF+N VLDK++ R+ E+K Sbjct: 113 LLKRIDVPYRVVINEGIELAKVYGSTDGHKFVNGVLDKLAPRLREVEVK 161 >gi|330899661|gb|EGH31080.1| transcription antitermination protein NusB [Pseudomonas syringae pv. japonica str. M301072PT] gi|330943563|gb|EGH45900.1| transcription antitermination protein NusB [Pseudomonas syringae pv. pisi str. 1704B] gi|330976725|gb|EGH76766.1| transcription antitermination protein NusB [Pseudomonas syringae pv. aptata str. DSM 50252] Length = 165 Score = 75.1 bits (183), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 52/162 (32%), Positives = 81/162 (50%), Gaps = 20/162 (12%) Query: 2 TIQDNKKDLK-------LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTE 54 T Q N +D K S +R AR A QALYQ + G S EI +++ Sbjct: 6 TDQFNPRDAKSPEAAKGKSAKRREARQMATQALYQWHMAGHSLNEIEAQFR--------- 56 Query: 55 LDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLE 114 V++ + +VD +F ++HGV K ID +S CL + LD + ++LR E Sbjct: 57 --VDNDFSNVDGTYFHELLHGVATNKTEIDTALSPCL--DLTIEELDPVELAVLRLSTFE 112 Query: 115 LIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRK 156 L++ VP V+I+E + +A + D KF+N VLDK++ + Sbjct: 113 LLKRIDVPYRVVINEGIELAKVYGSTDGHKFVNGVLDKLAPR 154 >gi|66047685|ref|YP_237526.1| transcription antitermination protein NusB [Pseudomonas syringae pv. syringae B728a] gi|75500475|sp|Q4ZMY4|NUSB_PSEU2 RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|63258392|gb|AAY39488.1| Antitermination protein NusB [Pseudomonas syringae pv. syringae B728a] Length = 165 Score = 74.7 bits (182), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 52/162 (32%), Positives = 81/162 (50%), Gaps = 20/162 (12%) Query: 2 TIQDNKKDLK-------LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTE 54 T Q N +D K S +R AR A QALYQ + G + EI +++ Sbjct: 6 TDQFNPRDAKSPEIAKGKSAKRREARQMATQALYQRHMAGHALNEIEAQFR--------- 56 Query: 55 LDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLE 114 V++ + +VD +FR ++HGV + ID + CL + LD I +ILR E Sbjct: 57 --VDNDFSNVDGTYFRELLHGVATNQTEIDTALKPCLD--LTIEELDPIELAILRLSTFE 112 Query: 115 LIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRK 156 L++ VP V+I+E + +A + D KF+N VLDK++ + Sbjct: 113 LLKRIDVPYRVVINEGIELAKVYGSTDGHKFVNGVLDKLAPR 154 >gi|157828080|ref|YP_001494322.1| transcription antitermination protein NusB [Rickettsia rickettsii str. 'Sheila Smith'] gi|165932780|ref|YP_001649569.1| transcription antitermination protein NusB [Rickettsia rickettsii str. Iowa] gi|166215712|sp|A8GQY9|NUSB_RICRS RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|189035898|sp|B0BWD7|NUSB_RICRO RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|157800561|gb|ABV75814.1| transcription antitermination protein NusB [Rickettsia rickettsii str. 'Sheila Smith'] gi|165907867|gb|ABY72163.1| N utilization substance protein B [Rickettsia rickettsii str. Iowa] Length = 156 Score = 74.7 bits (182), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 42/148 (28%), Positives = 83/148 (56%), Gaps = 8/148 (5%) Query: 14 HRRGIARLAAVQALYQI-----DIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEW 68 +++ IAR+AAVQA+YQ D + ++S Y+ D E++ + + + Sbjct: 7 NKKSIARIAAVQAIYQNILQNNDDMDDIMQNVLSFYQNNNSITDLP---ENLKISLSISH 63 Query: 69 FRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIIS 128 F++++ V + +D +I + LT + + ++L ++LR + EL+ C + P +V+I+ Sbjct: 64 FKMLVKLVFENIHKLDEIIDNHLTNDKDPAHMPILLRALLRVSICELLFCPTTPAKVVIN 123 Query: 129 EYVCIAHDFFYGDEPKFINAVLDKVSRK 156 EY IA+D E F+N+VLDK++++ Sbjct: 124 EYTDIANDMLNEHEIGFVNSVLDKIAKE 151 >gi|67459511|ref|YP_247135.1| transcription antitermination protein NusB [Rickettsia felis URRWXCal2] gi|75536082|sp|Q4UKG1|NUSB_RICFE RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|67005044|gb|AAY61970.1| N utilization substance protein B [Rickettsia felis URRWXCal2] Length = 156 Score = 74.3 bits (181), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 40/147 (27%), Positives = 82/147 (55%), Gaps = 2/147 (1%) Query: 14 HRRGIARLAAVQALYQIDIIGCSTTEIISE--YETYRFCADTELDVESVYLHVDLEWFRV 71 +++ IAR+AAVQA+YQ + + I + Y+ T E++ + + + F++ Sbjct: 7 NKKSIARIAAVQAIYQNILQNNDDMDDIMQNVLSFYQNNNSTTALPENLKISLSISHFKM 66 Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131 ++ V + +D +I + LT + + ++L ++LR + EL+ C + P +V+I+EY Sbjct: 67 LVKSVFENINKLDEIIDNHLTNDKDPAHMPILLRALLRVSICELLFCPTTPAKVVINEYT 126 Query: 132 CIAHDFFYGDEPKFINAVLDKVSRKEE 158 IA+D E F+N++LDK++++ Sbjct: 127 DIANDMLNEHEIGFVNSILDKIAQENN 153 >gi|28867922|ref|NP_790541.1| N utilization substance protein B [Pseudomonas syringae pv. tomato str. DC3000] gi|32171596|sp|Q889Q5|NUSB_PSESM RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|28851158|gb|AAO54236.1| N utilization substance protein B [Pseudomonas syringae pv. tomato str. DC3000] Length = 165 Score = 74.3 bits (181), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 55/169 (32%), Positives = 86/169 (50%), Gaps = 23/169 (13%) Query: 2 TIQDNKKDLK-------LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTE 54 T Q N +D K S +R AR A QALYQ + G + EI +++ Sbjct: 6 TDQFNPRDAKSPEIAKGKSAKRREARQMATQALYQRHMAGHALNEIEAQFR--------- 56 Query: 55 LDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLE 114 V++ + +VD +FR ++HGV + ID ++ CL + LD I +ILR E Sbjct: 57 --VDNDFSNVDGTYFRELLHGVAINQTEIDTALTPCL--DLTIEELDPIELAILRLSTFE 112 Query: 115 LIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVS---RKEEIK 160 L++ VP V+I+E + +A + D KF+N VLDK++ R+ E+K Sbjct: 113 LLKRIDVPYRVVINEGIELAKVYGSTDGHKFVNGVLDKLAPRLREVEVK 161 >gi|89099252|ref|ZP_01172130.1| transcription antitermination protein NusB [Bacillus sp. NRRL B-14911] gi|89086098|gb|EAR65221.1| transcription antitermination protein NusB [Bacillus sp. NRRL B-14911] Length = 130 Score = 73.9 bits (180), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 49/139 (35%), Positives = 68/139 (48%), Gaps = 16/139 (11%) Query: 15 RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74 +R AR A+QAL+QID+ +E I E D E+ +++ Sbjct: 2 KRRTAREKALQALFQIDVSQADPSEAID-----HVLEGEEGD----------EYLTLVVT 46 Query: 75 GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134 GV++ K+ ID LI L EKW RL + ++LR GV EL VP V+I E + IA Sbjct: 47 GVLENKEEIDSLIKQYL-EKWKLERLATVDRNLLRQGVYELKYSKEVPANVVIDEAIEIA 105 Query: 135 HDFFYGDEPKFINAVLDKV 153 F + +FIN VL KV Sbjct: 106 KIFGDDNSSRFINGVLSKV 124 >gi|237797516|ref|ZP_04585977.1| transcription antitermination protein NusB [Pseudomonas syringae pv. oryzae str. 1_6] gi|331020366|gb|EGI00423.1| transcription antitermination protein NusB [Pseudomonas syringae pv. oryzae str. 1_6] Length = 165 Score = 73.9 bits (180), Expect = 8e-12, Method: Compositional matrix adjust. Identities = 54/169 (31%), Positives = 85/169 (50%), Gaps = 23/169 (13%) Query: 2 TIQDNKKDLK-------LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTE 54 T Q N +D K S +R AR A QALYQ + G + EI +++ Sbjct: 6 TDQFNPRDAKSPEAAKGKSAKRREARQMATQALYQWHMAGHALNEIEAQFR--------- 56 Query: 55 LDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLE 114 V++ + +VD +F ++HGV K ID +S CL + LD + ++LR E Sbjct: 57 --VDNDFSNVDGTYFHELLHGVATNKTEIDTALSPCL--DLTIEELDPVELAVLRLSTFE 112 Query: 115 LIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVS---RKEEIK 160 L++ VP V+I+E + +A + D KF+N VLDK++ R+ E+K Sbjct: 113 LLKRIDVPYRVVINEGIELAKVYGSTDGHKFVNGVLDKLAPRLREVEVK 161 >gi|330877563|gb|EGH11712.1| transcription antitermination protein NusB [Pseudomonas syringae pv. morsprunorum str. M302280PT] Length = 165 Score = 73.2 bits (178), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 51/162 (31%), Positives = 82/162 (50%), Gaps = 20/162 (12%) Query: 2 TIQDNKKDLK-------LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTE 54 T Q N +D K S +R AR A QALYQ + G + +EI +++ Sbjct: 6 TDQFNPRDAKSPEIAKGKSAKRREARQMATQALYQRHMAGHALSEIEAQFR--------- 56 Query: 55 LDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLE 114 V++ + +VD +F ++HGV + ID ++ CL + LD I +ILR E Sbjct: 57 --VDNDFSNVDGTYFHELLHGVATNQTEIDTALTPCL--DLTIEELDPIELAILRLSTFE 112 Query: 115 LIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRK 156 L++ VP V+I+E + +A + D KF+N VLDK++ + Sbjct: 113 LLKRIDVPYRVVINEGIELAKVYGSTDGHKFVNGVLDKLAPR 154 >gi|83648594|ref|YP_437029.1| transcription antitermination protein NusB [Hahella chejuensis KCTC 2396] gi|119390775|sp|Q2S9S0|NUSB_HAHCH RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|83636637|gb|ABC32604.1| transcription antitermination factor NusB [Hahella chejuensis KCTC 2396] Length = 149 Score = 72.8 bits (177), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 47/144 (32%), Positives = 74/144 (51%), Gaps = 13/144 (9%) Query: 11 KLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFR 70 K +R AR A+QALYQ + G S ++I +E F D +L VD + F+ Sbjct: 3 KAMEKRRAARKLALQALYQWRVAGASISQIEAE-----FAVDNDLQ------QVDRDLFK 51 Query: 71 VIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEY 130 +++GV +D L+ + K + +D + S++R G EL VP V+I+E Sbjct: 52 AVLYGVPSSVSELDALLQPFVDRK--LTDVDPVELSLIRMGAFELRSRIEVPYRVVINEA 109 Query: 131 VCIAHDFFYGDEPKFINAVLDKVS 154 V +A F D KF+N+VLDK++ Sbjct: 110 VELAKQFGGTDGHKFVNSVLDKLA 133 >gi|26987256|ref|NP_742681.1| transcription antitermination protein NusB [Pseudomonas putida KT2440] gi|148545803|ref|YP_001265905.1| transcription antitermination protein NusB [Pseudomonas putida F1] gi|167031580|ref|YP_001666811.1| transcription antitermination protein NusB [Pseudomonas putida GB-1] gi|32171603|sp|Q88QH5|NUSB_PSEPK RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|166215708|sp|A5VXW1|NUSB_PSEP1 RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|189035897|sp|B0KL71|NUSB_PSEPG RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|24981898|gb|AAN66145.1|AE016242_13 N utilization substance protein B [Pseudomonas putida KT2440] gi|148509861|gb|ABQ76721.1| NusB antitermination factor [Pseudomonas putida F1] gi|166858068|gb|ABY96475.1| NusB antitermination factor [Pseudomonas putida GB-1] gi|313496885|gb|ADR58251.1| NusB [Pseudomonas putida BIRD-1] Length = 166 Score = 72.8 bits (177), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 53/151 (35%), Positives = 78/151 (51%), Gaps = 16/151 (10%) Query: 13 SHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVI 72 S +R AR A QALYQ + S EI +++ V++ + VD +FR I Sbjct: 25 SAKRREARKLATQALYQWHMAQHSLNEIEAQFR-----------VDNDFTDVDGAYFREI 73 Query: 73 IHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVC 132 +HGV K ID + C+T + LD + ++LR ELI+ VP V+I+E V Sbjct: 74 LHGVPAIKGEIDKALVPCMT--IALEELDPVELAVLRLSTWELIKRVDVPYRVVINEGVE 131 Query: 133 IAHDFFYGDEPKFINAVLDKVS---RKEEIK 160 +A F D KF+N VLDK++ R+ E+K Sbjct: 132 LAKVFGATDGHKFVNGVLDKLAPALREAEVK 162 >gi|90023094|ref|YP_528921.1| transcription antitermination protein NusB [Saccharophagus degradans 2-40] gi|119390816|sp|Q21F20|NUSB_SACD2 RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|89952694|gb|ABD82709.1| N utilization substance protein B [Saccharophagus degradans 2-40] Length = 150 Score = 72.8 bits (177), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 54/153 (35%), Positives = 80/153 (52%), Gaps = 17/153 (11%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 RG AR A+QALYQ ++ G + I +E+ T D ++ VD+E+F I+HG Sbjct: 8 RGRARHFAMQALYQWEMSGNALHVIEAEFHT-----DNDMS------KVDVEYFHEILHG 56 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135 V K +D LT +D + ++LR E + VP +V+I+E V +A Sbjct: 57 VAAIKSTLDETFKPFLT-GLRLDEIDPVSLAVLRQACYEFEKRVDVPYKVVINEAVNLAK 115 Query: 136 DFFYGDEPKFINAVLDKVS---RKEEIK--RSG 163 F D KFIN VLDKV+ RK+E++ R+G Sbjct: 116 KFGAADSHKFINGVLDKVALRVRKDEVEAMRTG 148 >gi|119945180|ref|YP_942860.1| NusB antitermination factor [Psychromonas ingrahamii 37] gi|229620369|sp|A1SUU6|NUSB_PSYIN RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|119863784|gb|ABM03261.1| NusB antitermination factor [Psychromonas ingrahamii 37] Length = 145 Score = 72.4 bits (176), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 46/146 (31%), Positives = 79/146 (54%), Gaps = 14/146 (9%) Query: 10 LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF 69 +K + RR AR +AVQA+YQ I S +II ++ T + + T D+ +F Sbjct: 3 MKPAERRR-ARQSAVQAIYQWQITKLSAGQIIEQFSTDQDLSKT-----------DVPYF 50 Query: 70 RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISE 129 + ++ GV+ R +D +S L+ K +DM+ ++LR + EL + +P +V+++E Sbjct: 51 KELLTGVIHRVDFLDEKLSPYLSRK--IEDVDMVDKAVLRLAMFELTQRTDIPHKVVLNE 108 Query: 130 YVCIAHDFFYGDEPKFINAVLDKVSR 155 + +A DF + KF+N VLDK R Sbjct: 109 AIELAKDFATDESYKFVNGVLDKALR 134 >gi|77461236|ref|YP_350743.1| transcription antitermination protein NusB [Pseudomonas fluorescens Pf0-1] gi|119390800|sp|Q3K652|NUSB_PSEPF RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|77385239|gb|ABA76752.1| N utilization substance protein B [Pseudomonas fluorescens Pf0-1] Length = 166 Score = 72.4 bits (176), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 51/151 (33%), Positives = 78/151 (51%), Gaps = 16/151 (10%) Query: 13 SHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVI 72 S +R AR A QALYQ + S EI +++ V++ + VD +FR I Sbjct: 25 SAKRREARQLATQALYQWHMARQSLNEIEAQFR-----------VDNDFTDVDGAYFREI 73 Query: 73 IHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVC 132 +HGV K ID ++ CL + LD + ++LR EL++ VP V+I+E + Sbjct: 74 LHGVPQFKTEIDNALTPCLD--LAIEELDPVELAVLRLSTWELLKRVDVPYRVVINEGIE 131 Query: 133 IAHDFFYGDEPKFINAVLDKVS---RKEEIK 160 +A F D KF+N VLDK++ R+ E+K Sbjct: 132 LAKVFGSTDGHKFVNGVLDKLAPRLREAEVK 162 >gi|70732819|ref|YP_262586.1| transcription antitermination protein NusB [Pseudomonas fluorescens Pf-5] gi|119390798|sp|Q4K597|NUSB_PSEF5 RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|68347118|gb|AAY94724.1| N utilization substance protein B [Pseudomonas fluorescens Pf-5] Length = 166 Score = 72.4 bits (176), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 50/151 (33%), Positives = 77/151 (50%), Gaps = 16/151 (10%) Query: 13 SHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVI 72 S +R AR A QALYQ + S EI +++ V++ + +D +FR I Sbjct: 25 SAKRREARQLATQALYQWHMAKHSLNEIEAQFR-----------VDNDFTDIDGAYFREI 73 Query: 73 IHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVC 132 +HGV K ID + CL + LD + ++LR EL++ VP V+I+E + Sbjct: 74 LHGVPANKNEIDTALVPCLD--LAIDELDPVELAVLRLSTWELLKRVDVPYRVVINEGIE 131 Query: 133 IAHDFFYGDEPKFINAVLDKVS---RKEEIK 160 +A F D KF+N VLDK++ R+ E+K Sbjct: 132 LAKVFGSTDGHKFVNGVLDKLAPRLREAEVK 162 >gi|20141624|sp|Q9ZE01|NUSB_RICPR RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|292571756|gb|ADE29671.1| N utilization substance protein B [Rickettsia prowazekii Rp22] Length = 155 Score = 72.4 bits (176), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 41/154 (26%), Positives = 85/154 (55%), Gaps = 17/154 (11%) Query: 14 HRRGIARLAAVQALYQIDIIGCSTTEIISEYETYR--------FCADTELDVESVY-LHV 64 +++ IAR+AAVQALYQ +I+ + Y+ Y + ++ +D+ + + + Sbjct: 7 NKKSIARIAAVQALYQ-NILQ-------NNYDMYDIMQNILACYHSNNSIDLPKNFKISL 58 Query: 65 DLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVE 124 + F++++ V + +D +I + LT + ++L ++LR + EL+ C + P + Sbjct: 59 SISHFKMLVKSVFENINKLDEIIDNHLTNAKDSVHMPILLRALLRVSICELLFCSTTPAK 118 Query: 125 VIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEE 158 V+I+EY IA+D E F+N++LDK++++ Sbjct: 119 VVINEYTDIANDLLNEHEIGFVNSILDKIAQENN 152 >gi|254427255|ref|ZP_05040962.1| transcription antitermination factor NusB [Alcanivorax sp. DG881] gi|196193424|gb|EDX88383.1| transcription antitermination factor NusB [Alcanivorax sp. DG881] Length = 149 Score = 72.0 bits (175), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 45/141 (31%), Positives = 76/141 (53%), Gaps = 13/141 (9%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 R AR +QALYQ + G + ++I ++ F A+ + + VD E+F ++HG Sbjct: 9 RRKARRFTLQALYQWQLAGAAVSDIEAQ-----FLANQD------FAKVDREYFHDLLHG 57 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135 V+ + + +D L++ L + L + +ILR G EL E VP V+I+E + +A Sbjct: 58 VLGQVKTLDELLTPYLDRR--VEELSQVEKAILRLGAFELKERQDVPYRVVINEGIELAK 115 Query: 136 DFFYGDEPKFINAVLDKVSRK 156 F D K++N VLDK++R+ Sbjct: 116 VFGAEDSFKYVNGVLDKLARQ 136 >gi|330812010|ref|YP_004356472.1| transcription antitermination protein NusB [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|327380118|gb|AEA71468.1| transcription antitermination protein NusB [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 166 Score = 72.0 bits (175), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 51/151 (33%), Positives = 78/151 (51%), Gaps = 16/151 (10%) Query: 13 SHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVI 72 S +R AR A QALYQ + S EI +++ V++ + VD +FR I Sbjct: 25 SVKRREARQLATQALYQWHMAKQSLNEIEAQFR-----------VDNDFSDVDGAYFREI 73 Query: 73 IHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVC 132 +HGV K ID ++ CL + LD + ++LR EL++ VP V+I+E + Sbjct: 74 LHGVPQFKTEIDTALTPCLD--LTIEELDPVELAVLRLSTWELLKRVDVPYRVVINEGIE 131 Query: 133 IAHDFFYGDEPKFINAVLDKVS---RKEEIK 160 +A F D KF+N VLDK++ R+ E+K Sbjct: 132 LAKVFGSTDGHKFVNGVLDKLAPRLREAEVK 162 >gi|15604037|ref|NP_220552.1| transcription antitermination protein NusB [Rickettsia prowazekii str. Madrid E] gi|3860728|emb|CAA14629.1| N UTILIZATION SUBSTANCE PROTEIN B (nusB) [Rickettsia prowazekii] Length = 174 Score = 72.0 bits (175), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 41/154 (26%), Positives = 85/154 (55%), Gaps = 17/154 (11%) Query: 14 HRRGIARLAAVQALYQIDIIGCSTTEIISEYETYR--------FCADTELDVESVY-LHV 64 +++ IAR+AAVQALYQ +I+ + Y+ Y + ++ +D+ + + + Sbjct: 26 NKKSIARIAAVQALYQ-NILQ-------NNYDMYDIMQNILACYHSNNSIDLPKNFKISL 77 Query: 65 DLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVE 124 + F++++ V + +D +I + LT + ++L ++LR + EL+ C + P + Sbjct: 78 SISHFKMLVKSVFENINKLDEIIDNHLTNAKDSVHMPILLRALLRVSICELLFCSTTPAK 137 Query: 125 VIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEE 158 V+I+EY IA+D E F+N++LDK++++ Sbjct: 138 VVINEYTDIANDLLNEHEIGFVNSILDKIAQENN 171 >gi|312963299|ref|ZP_07777782.1| N utilization substance protein B [Pseudomonas fluorescens WH6] gi|311282379|gb|EFQ60977.1| N utilization substance protein B [Pseudomonas fluorescens WH6] Length = 166 Score = 72.0 bits (175), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 48/151 (31%), Positives = 76/151 (50%), Gaps = 16/151 (10%) Query: 13 SHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVI 72 S +R AR A QALYQ + G S EI +++ V++ + D +F I Sbjct: 25 SEKRRAARQLATQALYQRHMAGTSLNEIEAQFR-----------VDNDFTFADQSYFHDI 73 Query: 73 IHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVC 132 +HGV ID ++ CL + LD + ++LR EL++ VP V+I+E + Sbjct: 74 LHGVPANLTEIDAALTPCL--DLTLEELDPVELAVLRLSTWELLKRVDVPYRVVINEGIE 131 Query: 133 IAHDFFYGDEPKFINAVLDKVS---RKEEIK 160 +A + D KF+N VLDK++ R+ E+K Sbjct: 132 LAKVYGSTDGHKFVNGVLDKLAPRLREAEVK 162 >gi|121997687|ref|YP_001002474.1| NusB antitermination factor [Halorhodospira halophila SL1] gi|166215692|sp|A1WVG0|NUSB_HALHL RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|121589092|gb|ABM61672.1| NusB antitermination factor [Halorhodospira halophila SL1] Length = 155 Score = 72.0 bits (175), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 47/140 (33%), Positives = 68/140 (48%), Gaps = 14/140 (10%) Query: 13 SHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVI 72 RR AR VQALYQ + G S +I ++ + + +D+ +FR + Sbjct: 7 GKRRSRARSKLVQALYQYAVTGASAEDIERQF------------LAAGLGDIDVAYFREL 54 Query: 73 IHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVC 132 I+GV DR +D +S+ L +LD + SILR G EL E VP V+I E V Sbjct: 55 IYGVTDRAAELDEQLSALLDR--PLVQLDPVERSILRLGAFELSERLEVPYRVVIDESVE 112 Query: 133 IAHDFFYGDEPKFINAVLDK 152 +A F ++IN VLD+ Sbjct: 113 LARRFGADQSHRYINGVLDR 132 >gi|237809261|ref|YP_002893701.1| NusB antitermination factor [Tolumonas auensis DSM 9187] gi|259514913|sp|C4LAE0|NUSB_TOLAT RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|237501522|gb|ACQ94115.1| NusB antitermination factor [Tolumonas auensis DSM 9187] Length = 138 Score = 70.9 bits (172), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 46/152 (30%), Positives = 79/152 (51%), Gaps = 14/152 (9%) Query: 10 LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF 69 +K + RR AR A+QA+YQ + + +I+ +++ +E VDL +F Sbjct: 1 MKPAERRK-ARHLALQAIYQWQLAKDNVADIVEQFK-----------LEQPTKGVDLPYF 48 Query: 70 RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISE 129 +++ GV++ ++D S L+ K LD I +LR EL C VP +V+I+E Sbjct: 49 ELLLTGVVNNVTNLDATFSPFLSRK--LDDLDQIDKGVLRLACYELTYCKDVPYKVVINE 106 Query: 130 YVCIAHDFFYGDEPKFINAVLDKVSRKEEIKR 161 + +A F D KF+N VLDKV ++ +++ Sbjct: 107 AIELAKAFATDDSHKFVNGVLDKVVKQMGLRQ 138 >gi|239948522|ref|ZP_04700275.1| transcription antitermination factor NusB [Rickettsia endosymbiont of Ixodes scapularis] gi|239922798|gb|EER22822.1| transcription antitermination factor NusB [Rickettsia endosymbiont of Ixodes scapularis] Length = 156 Score = 70.9 bits (172), Expect = 6e-11, Method: Compositional matrix adjust. Identities = 45/148 (30%), Positives = 85/148 (57%), Gaps = 8/148 (5%) Query: 14 HRRGIARLAAVQALYQI-----DIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEW 68 +++ IAR+AAVQA+YQ D + I+S Y+ D E++ + + + Sbjct: 7 NKKSIARIAAVQAIYQNILQNNDDMDDIMQNILSFYQNNNSITDLP---ENLKISLSISH 63 Query: 69 FRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIIS 128 F++++ V + +D +I + LT + + ++L ++LRAG+ EL+ C + P +V+I+ Sbjct: 64 FKMLVKSVFENINKLDEIIDNHLTNNKDPAHMLILLRALLRAGICELLFCPTTPAKVVIN 123 Query: 129 EYVCIAHDFFYGDEPKFINAVLDKVSRK 156 EY IA+D E F+N+VLDK++++ Sbjct: 124 EYTDIANDMLNEHEIGFVNSVLDKIAKE 151 >gi|51473361|ref|YP_067118.1| transcription antitermination protein NusB [Rickettsia typhi str. Wilmington] gi|51459673|gb|AAU03636.1| transcription termination protein NusB (N utilization substance protein B) [Rickettsia typhi str. Wilmington] Length = 173 Score = 70.9 bits (172), Expect = 6e-11, Method: Compositional matrix adjust. Identities = 41/153 (26%), Positives = 83/153 (54%), Gaps = 16/153 (10%) Query: 14 HRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCAD-------TELDVESVY-LHVD 65 +++ IAR+AAVQALYQ +I+ + Y+ Y + +D+ + + + Sbjct: 26 NKKSIARIAAVQALYQ-NILQ-------NNYDMYDIMQNILACYHSNSIDLPKNFKISLS 77 Query: 66 LEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEV 125 + F++++ V + +D +I + LT + ++L ++LR + EL+ C + P +V Sbjct: 78 ISHFKMLVKSVFENINKLDEIIDNHLTNDKDPVHMPILLRALLRVSICELLFCSTTPAKV 137 Query: 126 IISEYVCIAHDFFYGDEPKFINAVLDKVSRKEE 158 +I+EY IA+D E F+N++LDK++++ Sbjct: 138 VINEYTDIANDLLNEHEIGFVNSILDKIAQENN 170 >gi|119390814|sp|Q68XK6|NUSB_RICTY RecName: Full=N utilization substance protein B homolog; Short=Protein nusB Length = 154 Score = 70.9 bits (172), Expect = 6e-11, Method: Compositional matrix adjust. Identities = 41/153 (26%), Positives = 83/153 (54%), Gaps = 16/153 (10%) Query: 14 HRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCAD-------TELDVESVY-LHVD 65 +++ IAR+AAVQALYQ +I+ + Y+ Y + +D+ + + + Sbjct: 7 NKKSIARIAAVQALYQ-NILQ-------NNYDMYDIMQNILACYHSNSIDLPKNFKISLS 58 Query: 66 LEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEV 125 + F++++ V + +D +I + LT + ++L ++LR + EL+ C + P +V Sbjct: 59 ISHFKMLVKSVFENINKLDEIIDNHLTNDKDPVHMPILLRALLRVSICELLFCSTTPAKV 118 Query: 126 IISEYVCIAHDFFYGDEPKFINAVLDKVSRKEE 158 +I+EY IA+D E F+N++LDK++++ Sbjct: 119 VINEYTDIANDLLNEHEIGFVNSILDKIAQENN 151 >gi|104779852|ref|YP_606350.1| transcription antitermination protein NusB [Pseudomonas entomophila L48] gi|123079269|sp|Q1IFL9|NUSB_PSEE4 RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|95108839|emb|CAK13535.1| transcription termination, L factor (N utilization substance protein B) [Pseudomonas entomophila L48] Length = 166 Score = 70.9 bits (172), Expect = 6e-11, Method: Compositional matrix adjust. Identities = 48/144 (33%), Positives = 71/144 (49%), Gaps = 13/144 (9%) Query: 13 SHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVI 72 S +R AR A QALYQ + S E+ +++ V++ + VD +FR I Sbjct: 25 SAKRREARKLATQALYQWHMAKHSLNEVEAQFR-----------VDNDFSDVDGAYFREI 73 Query: 73 IHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVC 132 +HGV +K ID + CL LD + S+LR E + VP V+I+E V Sbjct: 74 LHGVPAKKVEIDEALKPCLDT--PLEELDPVELSVLRLSAWEFMMRADVPYRVVINEGVE 131 Query: 133 IAHDFFYGDEPKFINAVLDKVSRK 156 +A F D KF+N VLDK++ + Sbjct: 132 LAKVFGATDGHKFVNGVLDKLAPR 155 >gi|288553331|ref|YP_003425266.1| transcription antitermination protein NusB [Bacillus pseudofirmus OF4] gi|288544491|gb|ADC48374.1| transcription antitermination protein NusB [Bacillus pseudofirmus OF4] Length = 135 Score = 70.9 bits (172), Expect = 6e-11, Method: Compositional matrix adjust. Identities = 46/139 (33%), Positives = 72/139 (51%), Gaps = 19/139 (13%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDL--EWFRVII 73 R +ARL A QALYQ+D+ G SE E+ +ESV + E+F ++ Sbjct: 3 RRLARLRAAQALYQMDLTG-------SEMESA---------IESVLEDNEKQSEFFTQLV 46 Query: 74 HGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCI 133 G + K ID IS+ L E W+ SR+ + +I+R + E++E +PV V +E + + Sbjct: 47 QGTTELKTKIDETISANL-EGWTISRMGHVDRAIIRMAMYEMLEVEDIPVNVTFNEAIEL 105 Query: 134 AHDFFYGDEPKFINAVLDK 152 A F + +F+N VL K Sbjct: 106 AKAFGGEEAGRFVNGVLSK 124 >gi|192359459|ref|YP_001983152.1| transcription antitermination protein NusB [Cellvibrio japonicus Ueda107] gi|190685624|gb|ACE83302.1| transcription antitermination factor NusB [Cellvibrio japonicus Ueda107] Length = 168 Score = 70.5 bits (171), Expect = 7e-11, Method: Compositional matrix adjust. Identities = 49/154 (31%), Positives = 76/154 (49%), Gaps = 12/154 (7%) Query: 1 MTIQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESV 60 MT ++ R +AR A+QALYQ + G S I +E+ T D ++ Sbjct: 12 MTSSPGSDKSHIAATRRMARHYAMQALYQWHMAGSSLNAIEAEFRT-----DNDMS---- 62 Query: 61 YLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHS 120 VD+++F ++HGV ++ ++ L ++ S LD I ++LR EL Sbjct: 63 --KVDVDYFHELLHGVPEQLSGLEEQFQPFLVDR-SLEELDAITRALLRMATYELKNRID 119 Query: 121 VPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVS 154 VP +V+I+E V +A F D KFIN VLDK + Sbjct: 120 VPYKVVINEAVSLAKKFGAEDSHKFINGVLDKTA 153 >gi|170719757|ref|YP_001747445.1| transcription antitermination protein NusB [Pseudomonas putida W619] gi|229620367|sp|B1J3F6|NUSB_PSEPW RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|169757760|gb|ACA71076.1| NusB antitermination factor [Pseudomonas putida W619] Length = 166 Score = 70.1 bits (170), Expect = 9e-11, Method: Compositional matrix adjust. Identities = 51/151 (33%), Positives = 76/151 (50%), Gaps = 16/151 (10%) Query: 13 SHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVI 72 S +R AR A QALYQ + S EI +++ V++ + VD +FR I Sbjct: 25 SAKRREARKLATQALYQWHMAQHSLNEIEAQFR-----------VDNDFTDVDGAYFREI 73 Query: 73 IHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVC 132 +HGV K ID + C+ + LD + ++LR E I+ VP V+I+E V Sbjct: 74 LHGVPAIKSEIDSALKPCMD--IALEELDPVELAVLRLSTWEFIKRVDVPYRVVINEGVE 131 Query: 133 IAHDFFYGDEPKFINAVLDKVS---RKEEIK 160 +A F D KF+N VLDK++ R+ E+K Sbjct: 132 LAKVFGATDGHKFVNGVLDKLAPSLREAEVK 162 >gi|110835031|ref|YP_693890.1| transcriptional terminator nusB [Alcanivorax borkumensis SK2] gi|119372273|sp|Q0VMI0|NUSB_ALCBS RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|110648142|emb|CAL17618.1| transcriptional terminator nusB [Alcanivorax borkumensis SK2] Length = 150 Score = 69.7 bits (169), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 44/141 (31%), Positives = 75/141 (53%), Gaps = 13/141 (9%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 R AR +QALYQ + G + ++I ++ F A+ + + VD E+F ++HG Sbjct: 10 RRKARRFTLQALYQWQLAGAAVSDIEAQ-----FLANQD------FAKVDREYFHDLLHG 58 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135 V+ + + +D ++ L + L + +ILR G EL E VP V+I+E + +A Sbjct: 59 VLGQVKTLDEQLTPYLDRR--VEELSQVEKAILRLGAFELKERQDVPYRVVINEGIELAK 116 Query: 136 DFFYGDEPKFINAVLDKVSRK 156 F D K++N VLDK++R+ Sbjct: 117 VFGAEDSFKYVNGVLDKLARQ 137 >gi|229592845|ref|YP_002874964.1| transcription antitermination protein NusB [Pseudomonas fluorescens SBW25] gi|259514879|sp|C3K2R8|NUSB_PSEFS RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|229364711|emb|CAY52674.1| putative N utilisation-related protein [Pseudomonas fluorescens SBW25] Length = 166 Score = 69.7 bits (169), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 48/151 (31%), Positives = 75/151 (49%), Gaps = 16/151 (10%) Query: 13 SHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVI 72 + +R AR A QALYQ I G S EI +++ V++ + DL +F I Sbjct: 25 NEKRRAARQLATQALYQRQIAGASLNEIEAQFR-----------VDNDFTFADLPYFHDI 73 Query: 73 IHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVC 132 +HGV ID ++ CL + LD + ++R EL+ VP V+I+E + Sbjct: 74 LHGVHAHLTEIDAALAPCLD--LTIDELDPVELCVMRLSAWELLYRVDVPYRVVINEGIE 131 Query: 133 IAHDFFYGDEPKFINAVLDKVS---RKEEIK 160 +A + D KF+N VLDK++ R+ E+K Sbjct: 132 LAKVYGSTDGHKFVNGVLDKLAPRLREAEVK 162 >gi|149909343|ref|ZP_01897999.1| transcription antitermination protein NusB [Moritella sp. PE36] gi|149807660|gb|EDM67608.1| transcription antitermination protein NusB [Moritella sp. PE36] Length = 140 Score = 69.7 bits (169), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 46/145 (31%), Positives = 76/145 (52%), Gaps = 13/145 (8%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 R AR A QA+YQ + T E ++ E ++F D + + D +FR ++ G Sbjct: 6 RSKARQFATQAIYQWQM----TQETVANIE-HQFVTDQD------FSGTDATYFRELVLG 54 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135 V +D L+S L+ + LD++ +ILR EL++ VP +V+I+E + +A Sbjct: 55 VSLNSAELDELMSPFLSR--PLNDLDLVEKAILRLSTFELLKRQDVPYKVVINESIELAK 112 Query: 136 DFFYGDEPKFINAVLDKVSRKEEIK 160 DF D KF+N VLDK+ K +++ Sbjct: 113 DFGAEDSHKFVNGVLDKIVSKLQLR 137 >gi|329898127|ref|ZP_08272329.1| Transcription termination protein NusB [gamma proteobacterium IMCC3088] gi|328920907|gb|EGG28339.1| Transcription termination protein NusB [gamma proteobacterium IMCC3088] Length = 147 Score = 69.3 bits (168), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 50/144 (34%), Positives = 75/144 (52%), Gaps = 13/144 (9%) Query: 12 LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71 +S R AR VQALY+ + S+T+I +E+ ++ + HVDLE+F+ Sbjct: 8 ISAERHKARHYTVQALYRWHMNEQSSTDIEAEFR-----------IDYDFSHVDLEYFQA 56 Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131 ++HGV+ ID + L LD + +ILR G+ EL E VP +V+I+E V Sbjct: 57 LLHGVVKTHASIDAYLEPLLDR--KLDDLDAVELAILRMGLFELKERLDVPFKVVINEAV 114 Query: 132 CIAHDFFYGDEPKFINAVLDKVSR 155 + F D K+IN VLDK +R Sbjct: 115 SLTRKFGATDGHKYINGVLDKAAR 138 >gi|323144126|ref|ZP_08078765.1| transcription antitermination factor NusB [Succinatimonas hippei YIT 12066] gi|322416103|gb|EFY06798.1| transcription antitermination factor NusB [Succinatimonas hippei YIT 12066] Length = 143 Score = 69.3 bits (168), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 47/140 (33%), Positives = 69/140 (49%), Gaps = 13/140 (9%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 R AR A+QA+YQ + G S EI +F D + DL++ +I G Sbjct: 13 RHKARHFAMQAIYQWQMTGQSAGEI-----ERQFLEDQPIQ------GADLDYMHDLISG 61 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135 V+ +HID + L+ LD + +ILR G EL+ +P V+I+E + +A Sbjct: 62 VVANFEHIDEVYEPFLSR--PLKDLDQVDKAILRLGTFELLYRQEIPFRVVINESIMLAK 119 Query: 136 DFFYGDEPKFINAVLDKVSR 155 +F D KF+N VLDKV R Sbjct: 120 EFAEQDSHKFVNGVLDKVVR 139 >gi|49080752|gb|AAT50054.1| PA4052 [synthetic construct] Length = 160 Score = 68.9 bits (167), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 48/146 (32%), Positives = 72/146 (49%), Gaps = 14/146 (9%) Query: 11 KLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFR 70 K + RR AR AVQALY I G EI +++ T ++ + VD +F Sbjct: 17 KTAARR-KARSLAVQALYSWQIAGQPLHEIEAQFRT-----------DNDFSEVDGAYFH 64 Query: 71 VIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEY 130 I+HGV +K +D CL + +D + +ILR EL VP +V+I+E Sbjct: 65 EILHGVPRQKSELDSTFEPCLDR--PLAEIDPVELAILRLSTYELRNRIDVPYKVVINEG 122 Query: 131 VCIAHDFFYGDEPKFINAVLDKVSRK 156 + +A F D KF+N VLDK++ + Sbjct: 123 IELAKTFGATDGHKFVNGVLDKLAPR 148 >gi|41407196|ref|NP_960032.1| transcription antitermination protein NusB [Mycobacterium avium subsp. paratuberculosis K-10] gi|118463415|ref|YP_882592.1| transcription antitermination protein NusB [Mycobacterium avium 104] gi|254775857|ref|ZP_05217373.1| transcription antitermination protein NusB [Mycobacterium avium subsp. avium ATCC 25291] gi|81571413|sp|Q741J2|NUSB_MYCPA RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|166215696|sp|A0QI54|NUSB_MYCA1 RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|41395547|gb|AAS03415.1| NusB [Mycobacterium avium subsp. paratuberculosis K-10] gi|118164702|gb|ABK65599.1| transcription antitermination factor NusB [Mycobacterium avium 104] Length = 156 Score = 68.9 bits (167), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 48/146 (32%), Positives = 70/146 (47%), Gaps = 12/146 (8%) Query: 8 KDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLE 67 K L+ H+ AR AV L++ + G S E++ + ADT +V + Sbjct: 3 KPLRGRHQ---ARKRAVDLLFEAEARGLSPAEVV---DVRTGLADTNPEVAPLQ-----P 51 Query: 68 WFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVII 127 + + GV D HID LISS L + W+ RL + +ILR V EL+ VP V + Sbjct: 52 YTAAVARGVGDHAAHIDDLISSHL-QGWTLDRLPAVDRAILRVAVWELLYADDVPEPVAV 110 Query: 128 SEYVCIAHDFFYGDEPKFINAVLDKV 153 E V +A + D P F+N VL +V Sbjct: 111 DEAVQLAKELSTDDSPGFVNGVLGQV 136 >gi|323140958|ref|ZP_08075870.1| transcription antitermination factor NusB [Phascolarctobacterium sp. YIT 12067] gi|322414561|gb|EFY05368.1| transcription antitermination factor NusB [Phascolarctobacterium sp. YIT 12067] Length = 154 Score = 68.9 bits (167), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 50/154 (32%), Positives = 80/154 (51%), Gaps = 15/154 (9%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIIS----EYETYRFCA--------DTELDVESVYLH 63 R +AR A+QAL+QID G + + E+E A EL S + Sbjct: 3 RRLAREVALQALFQIDFTGNEVEQAVDAALDEHEELHPEAAVDKALDQHKELGAASARNY 62 Query: 64 VDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELI-ECHSVP 122 V ++ V+++GV++ K+ ID ++SC T+ W+ R+ +ILR V E+ E ++ Sbjct: 63 VK-KYSMVLVNGVVENKEAIDATLNSCATD-WTVERMPATDRNILRVAVFEMRHEKPALA 120 Query: 123 VEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRK 156 V I+E V IA + + P+FIN VL K++RK Sbjct: 121 AGVAINEAVEIAKAYGTEESPRFINGVLGKLARK 154 >gi|160872402|ref|ZP_02062534.1| transcription antitermination factor NusB [Rickettsiella grylli] gi|159121201|gb|EDP46539.1| transcription antitermination factor NusB [Rickettsiella grylli] Length = 148 Score = 68.9 bits (167), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 47/157 (29%), Positives = 80/157 (50%), Gaps = 16/157 (10%) Query: 1 MTIQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESV 60 MT + K + K R AR AVQA+YQ + T E S +T +F A E+ Sbjct: 1 MTQKSKKNNFKAKQR---ARRFAVQAIYQWQL----TQETFSVIQT-KFLAQEEMK---- 48 Query: 61 YLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHS 120 VD +F +I+ G+++ + +D + S + +LD + +ILR G EL+ C Sbjct: 49 --SVDTAYFTLIVQGILNDHELLDRYLQSFVDR--PLCQLDCVEWAILRLGTYELLNCSE 104 Query: 121 VPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKE 157 +P +VI++E + +A F D K++N +L +++ K Sbjct: 105 IPYKVILNEAIELAKMFGATDSYKYVNGILHRIAEKN 141 >gi|168705385|ref|ZP_02737662.1| transcription antitermination protein NusB [Gemmata obscuriglobus UQM 2246] Length = 139 Score = 68.9 bits (167), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 41/148 (27%), Positives = 71/148 (47%), Gaps = 13/148 (8%) Query: 24 VQALYQIDIIGCSTT-EIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQH 82 +Q L+Q D + I ++ R D E+ ++ L+ GV RK Sbjct: 3 LQLLFQWDQNPTKVPRKAIQQFARDRLLGDAEMSTYALSLY----------DGVAGRKDA 52 Query: 83 IDLLISSCLTEKWSFSRLDMILCSILRAGVLELI-ECHSVPVEVIISEYVCIAHDFFYGD 141 ID + S T W +R+ + ++LR G EL+ + P+EV+I+E + +A F D Sbjct: 53 IDEALKSAAT-NWRLTRMTPVDRNVLRLGAFELLFDAAPQPLEVVINEAIELAKRFGSED 111 Query: 142 EPKFINAVLDKVSRKEEIKRSGCVSAIT 169 P F+N VLD+V + + +++G S + Sbjct: 112 SPAFVNGVLDRVGKMRDERKAGAGSGAS 139 >gi|90406964|ref|ZP_01215155.1| N utilization substance protein B [Psychromonas sp. CNPT3] gi|90312006|gb|EAS40100.1| N utilization substance protein B [Psychromonas sp. CNPT3] Length = 139 Score = 68.6 bits (166), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 47/146 (32%), Positives = 76/146 (52%), Gaps = 14/146 (9%) Query: 10 LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF 69 +K + RR AR AVQA+YQ I +II ++ V+ + D+ +F Sbjct: 1 MKPAERRR-ARQFAVQAVYQWQITKGPVGQIIEQFS-----------VDQDFSKTDVPYF 48 Query: 70 RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISE 129 + ++ GV+ R + ID +S L+ K +DM+ +ILR + EL VP +V+++E Sbjct: 49 KELLAGVVSRIETIDEKLSPYLSRK--IGDVDMVDIAILRLAMFELSYRTDVPHKVVLNE 106 Query: 130 YVCIAHDFFYGDEPKFINAVLDKVSR 155 + +A DF + KF+N VLDK R Sbjct: 107 AIELAKDFATDESYKFVNGVLDKALR 132 >gi|15599247|ref|NP_252741.1| transcription antitermination protein NusB [Pseudomonas aeruginosa PAO1] gi|107103566|ref|ZP_01367484.1| hypothetical protein PaerPA_01004636 [Pseudomonas aeruginosa PACS2] gi|116052089|ref|YP_789067.1| transcription antitermination protein NusB [Pseudomonas aeruginosa UCBPP-PA14] gi|218889667|ref|YP_002438531.1| transcription antitermination protein NusB [Pseudomonas aeruginosa LESB58] gi|254242734|ref|ZP_04936056.1| NusB protein [Pseudomonas aeruginosa 2192] gi|296387391|ref|ZP_06876890.1| transcription antitermination protein NusB [Pseudomonas aeruginosa PAb1] gi|313109495|ref|ZP_07795451.1| NusB protein [Pseudomonas aeruginosa 39016] gi|22095967|sp|Q9HWX6|NUSB_PSEAE RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|9950248|gb|AAG07439.1|AE004821_12 NusB protein [Pseudomonas aeruginosa PAO1] gi|115587310|gb|ABJ13325.1| NusB [Pseudomonas aeruginosa UCBPP-PA14] gi|126196112|gb|EAZ60175.1| NusB protein [Pseudomonas aeruginosa 2192] gi|218769890|emb|CAW25651.1| NusB protein [Pseudomonas aeruginosa LESB58] gi|310881953|gb|EFQ40547.1| NusB protein [Pseudomonas aeruginosa 39016] Length = 159 Score = 68.6 bits (166), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 48/146 (32%), Positives = 72/146 (49%), Gaps = 14/146 (9%) Query: 11 KLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFR 70 K + RR AR AVQALY I G EI +++ T ++ + VD +F Sbjct: 17 KTAARR-KARSLAVQALYSWQIAGQPLHEIEAQFRT-----------DNDFSEVDGAYFH 64 Query: 71 VIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEY 130 I+HGV +K +D CL + +D + +ILR EL VP +V+I+E Sbjct: 65 EILHGVPRQKSELDSTFEPCLDR--PLAEIDPVELAILRLSTYELRNRIDVPYKVVINEG 122 Query: 131 VCIAHDFFYGDEPKFINAVLDKVSRK 156 + +A F D KF+N VLDK++ + Sbjct: 123 IELAKTFGATDGHKFVNGVLDKLAPR 148 >gi|152985013|ref|YP_001346435.1| transcription antitermination protein NusB [Pseudomonas aeruginosa PA7] gi|150960171|gb|ABR82196.1| transcription antitermination factor NusB [Pseudomonas aeruginosa PA7] Length = 159 Score = 68.6 bits (166), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 48/146 (32%), Positives = 72/146 (49%), Gaps = 14/146 (9%) Query: 11 KLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFR 70 K + RR AR AVQALY I G EI +++ T ++ + VD +F Sbjct: 17 KTAARR-KARSLAVQALYSWQIAGQPLHEIEAQFRT-----------DNDFSEVDGAYFH 64 Query: 71 VIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEY 130 I+HGV +K +D CL + +D + +ILR EL VP +V+I+E Sbjct: 65 EILHGVPRQKSELDSTFEPCLDR--PLAEIDPVELAILRLSTYELRNRIDVPYKVVINEG 122 Query: 131 VCIAHDFFYGDEPKFINAVLDKVSRK 156 + +A F D KF+N VLDK++ + Sbjct: 123 IELAKTFGATDGHKFVNGVLDKLAPR 148 >gi|328947375|ref|YP_004364712.1| NusB antitermination factor [Treponema succinifaciens DSM 2489] gi|328447699|gb|AEB13415.1| NusB antitermination factor [Treponema succinifaciens DSM 2489] Length = 161 Score = 68.6 bits (166), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 49/164 (29%), Positives = 82/164 (50%), Gaps = 23/164 (14%) Query: 12 LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYL--------- 62 +S R G R+ AVQALY D+ G ++ E + + E + D+E + ++ Sbjct: 1 MSRRNG--RIFAVQALYSYDV-GKASLEDLLKLEWLK--EDSENNPSGKFVLPETVTETS 55 Query: 63 ---------HVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVL 113 ++ R++I G ++ Q ID I + LT W+F RL+ + SILR V Sbjct: 56 ETEDFSQSRAESYDFARLLISGTINHIQEIDEKIKAHLTANWNFDRLNRVTLSILRISVF 115 Query: 114 ELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKE 157 L+ + +II E + I+ +F D +FINA+LD +S++E Sbjct: 116 ALLYQKELKPTIIIDEAIAISKEFGTDDSFRFINAILDTISKEE 159 >gi|332297436|ref|YP_004439358.1| NusB antitermination factor [Treponema brennaborense DSM 12168] gi|332180539|gb|AEE16227.1| NusB antitermination factor [Treponema brennaborense DSM 12168] Length = 138 Score = 68.6 bits (166), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 45/144 (31%), Positives = 76/144 (52%), Gaps = 10/144 (6%) Query: 12 LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71 ++ R+G R+ A QAL+ D+ G S E+++ E DV + L + R+ Sbjct: 1 MARRKG--RILAFQALFSWDVGGMSVDELLA-------FPWMEADVLAKTDEGSLSFARL 51 Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131 +I G ++ ID LI + L + W F R++ + ++LR V L+ H + ++I E + Sbjct: 52 LIAGTIEHIDEIDSLIKAHL-DSWDFERINKVDLAVLRISVYPLLYQHDIHPSIVIDEAI 110 Query: 132 CIAHDFFYGDEPKFINAVLDKVSR 155 IA +F GD +FINAVLD + + Sbjct: 111 DIAKEFGSGDSFRFINAVLDNIRK 134 >gi|254236941|ref|ZP_04930264.1| NusB protein [Pseudomonas aeruginosa C3719] gi|126168872|gb|EAZ54383.1| NusB protein [Pseudomonas aeruginosa C3719] Length = 159 Score = 68.2 bits (165), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 50/146 (34%), Positives = 72/146 (49%), Gaps = 14/146 (9%) Query: 11 KLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFR 70 K + RR AR AVQALY I G EI ++ F AD + + VD +F Sbjct: 17 KTAARR-KARSLAVQALYSWQIAGQPLHEIEAQ-----FRADND------FSEVDGAYFH 64 Query: 71 VIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEY 130 I+HGV +K +D CL + +D + +ILR EL VP +V+I+E Sbjct: 65 EILHGVPRQKSELDSTFEPCLDR--PLAEIDPVELAILRLSTYELRNRIDVPYKVVINEG 122 Query: 131 VCIAHDFFYGDEPKFINAVLDKVSRK 156 + +A F D KF+N VLDK++ + Sbjct: 123 IELAKTFGATDGHKFVNGVLDKLAPR 148 >gi|146281225|ref|YP_001171378.1| transcription antitermination protein NusB [Pseudomonas stutzeri A1501] gi|166215709|sp|A4VHT5|NUSB_PSEU5 RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|145569430|gb|ABP78536.1| NusB protein [Pseudomonas stutzeri A1501] gi|327479379|gb|AEA82689.1| transcription antitermination protein NusB [Pseudomonas stutzeri DSM 4166] Length = 161 Score = 68.2 bits (165), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 46/144 (31%), Positives = 76/144 (52%), Gaps = 14/144 (9%) Query: 11 KLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFR 70 K++ RR +AR A+QALYQ + G S EI +++ V++ + VD +F Sbjct: 19 KIATRR-VARSLAMQALYQWHMAGQSLNEIEAQFR-----------VDNDFSGVDGAYFH 66 Query: 71 VIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEY 130 +++GV +K +D I+ L LD + +ILR EL++ VP V+I+E Sbjct: 67 ELLNGVARKKTEVDQAIAPNLDR--PLDELDPVELAILRLSTYELMQRIDVPYRVVINEG 124 Query: 131 VCIAHDFFYGDEPKFINAVLDKVS 154 + +A + D KF+N VLDK++ Sbjct: 125 IELAKVYGATDGHKFVNGVLDKLA 148 >gi|108799326|ref|YP_639523.1| transcription antitermination protein NusB [Mycobacterium sp. MCS] gi|119868442|ref|YP_938394.1| transcription antitermination protein NusB [Mycobacterium sp. KMS] gi|126434984|ref|YP_001070675.1| transcription antitermination protein NusB [Mycobacterium sp. JLS] gi|119390786|sp|Q1B9G7|NUSB_MYCSS RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|166215699|sp|A3PZ57|NUSB_MYCSJ RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|166215700|sp|A1UFJ6|NUSB_MYCSK RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|108769745|gb|ABG08467.1| NusB antitermination factor [Mycobacterium sp. MCS] gi|119694531|gb|ABL91604.1| NusB antitermination factor [Mycobacterium sp. KMS] gi|126234784|gb|ABN98184.1| NusB antitermination factor [Mycobacterium sp. JLS] Length = 162 Score = 68.2 bits (165), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 45/145 (31%), Positives = 69/145 (47%), Gaps = 9/145 (6%) Query: 9 DLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEW 68 D + R AR AV L++ + G + E+ + + A T+ DV ++ + Sbjct: 3 DRRPDRGRHQARKRAVDLLFEAEARGLTAAEVAT---SRNKLAGTQPDVTALN-----PY 54 Query: 69 FRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIIS 128 + GV D + HID LIS+ L + W+ RL + +ILR V EL+ VP V + Sbjct: 55 TVTVARGVTDHRDHIDDLISAHL-QGWTLDRLPAVDRAILRVAVWELLHAEDVPEPVAVD 113 Query: 129 EYVCIAHDFFYGDEPKFINAVLDKV 153 E V +A D P F+N VL +V Sbjct: 114 EAVELAKQLSTDDSPGFVNGVLGQV 138 >gi|15609670|ref|NP_217049.1| transcription antitermination protein NusB [Mycobacterium tuberculosis H37Rv] gi|148662371|ref|YP_001283894.1| transcription antitermination protein NusB [Mycobacterium tuberculosis H37Ra] gi|148823728|ref|YP_001288482.1| transcription antitermination protein NusB [Mycobacterium tuberculosis F11] gi|167967008|ref|ZP_02549285.1| transcription antitermination protein NusB [Mycobacterium tuberculosis H37Ra] gi|215404474|ref|ZP_03416655.1| transcription antitermination protein NusB [Mycobacterium tuberculosis 02_1987] gi|215412305|ref|ZP_03421065.1| transcription antitermination protein NusB [Mycobacterium tuberculosis 94_M4241A] gi|215446785|ref|ZP_03433537.1| transcription antitermination protein NusB [Mycobacterium tuberculosis T85] gi|218754265|ref|ZP_03533061.1| transcription antitermination protein NusB [Mycobacterium tuberculosis GM 1503] gi|253798387|ref|YP_003031388.1| N utilization substance protein B nusB [Mycobacterium tuberculosis KZN 1435] gi|254232655|ref|ZP_04925982.1| N utilization substance protein nusB (nusb protein) [Mycobacterium tuberculosis C] gi|254366739|ref|ZP_04982782.1| N utilization substance protein nusB (nusb protein) [Mycobacterium tuberculosis str. Haarlem] gi|254551582|ref|ZP_05142029.1| transcription antitermination protein NusB [Mycobacterium tuberculosis '98-R604 INH-RIF-EM'] gi|289553678|ref|ZP_06442888.1| N utilization substance protein B nusB [Mycobacterium tuberculosis KZN 605] gi|289746319|ref|ZP_06505697.1| N utilization substance protein nusB [Mycobacterium tuberculosis 02_1987] gi|289758663|ref|ZP_06518041.1| transcription antitermination protein NusB [Mycobacterium tuberculosis T85] gi|289762701|ref|ZP_06522079.1| N utilization substance protein nusB (nusb protein) [Mycobacterium tuberculosis GM 1503] gi|294994358|ref|ZP_06800049.1| transcription antitermination protein NusB [Mycobacterium tuberculosis 210] gi|297635143|ref|ZP_06952923.1| transcription antitermination protein NusB [Mycobacterium tuberculosis KZN 4207] gi|297732134|ref|ZP_06961252.1| transcription antitermination protein NusB [Mycobacterium tuberculosis KZN R506] gi|298526007|ref|ZP_07013416.1| transcription antitermination protein NusB [Mycobacterium tuberculosis 94_M4241A] gi|306776807|ref|ZP_07415144.1| N utilization substance protein B nusB [Mycobacterium tuberculosis SUMu001] gi|306780573|ref|ZP_07418910.1| N utilization substance protein B nusB [Mycobacterium tuberculosis SUMu002] gi|306789935|ref|ZP_07428257.1| N utilization substance protein B nusB [Mycobacterium tuberculosis SUMu004] gi|313659467|ref|ZP_07816347.1| transcription antitermination protein NusB [Mycobacterium tuberculosis KZN V2475] gi|7387976|sp|P95020|NUSB_MYCTU RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|166215701|sp|A5U5N2|NUSB_MYCTA RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|8569494|pdb|1EYV|A Chain A, The Crystal Structure Of Nusb From Mycobacterium Tuberculosis gi|8569495|pdb|1EYV|B Chain B, The Crystal Structure Of Nusb From Mycobacterium Tuberculosis gi|1781069|emb|CAB06175.1| N UTILIZATION SUBSTANCE PROTEIN NUSB (NUSB PROTEIN) [Mycobacterium tuberculosis H37Rv] gi|124601714|gb|EAY60724.1| N utilization substance protein nusB (nusb protein) [Mycobacterium tuberculosis C] gi|134152250|gb|EBA44295.1| N utilization substance protein nusB (nusb protein) [Mycobacterium tuberculosis str. Haarlem] gi|148506523|gb|ABQ74332.1| transcription antitermination protein NusB [Mycobacterium tuberculosis H37Ra] gi|148722255|gb|ABR06880.1| N utilization substance protein B nusB [Mycobacterium tuberculosis F11] gi|253319890|gb|ACT24493.1| N utilization substance protein B nusB [Mycobacterium tuberculosis KZN 1435] gi|289438310|gb|EFD20803.1| N utilization substance protein B nusB [Mycobacterium tuberculosis KZN 605] gi|289686847|gb|EFD54335.1| N utilization substance protein nusB [Mycobacterium tuberculosis 02_1987] gi|289710207|gb|EFD74223.1| N utilization substance protein nusB (nusb protein) [Mycobacterium tuberculosis GM 1503] gi|289714227|gb|EFD78239.1| transcription antitermination protein NusB [Mycobacterium tuberculosis T85] gi|298495801|gb|EFI31095.1| transcription antitermination protein NusB [Mycobacterium tuberculosis 94_M4241A] gi|308214814|gb|EFO74213.1| N utilization substance protein B nusB [Mycobacterium tuberculosis SUMu001] gi|308326587|gb|EFP15438.1| N utilization substance protein B nusB [Mycobacterium tuberculosis SUMu002] gi|308333625|gb|EFP22476.1| N utilization substance protein B nusB [Mycobacterium tuberculosis SUMu004] gi|323718889|gb|EGB28044.1| N utilization substance protein B nusB [Mycobacterium tuberculosis CDC1551A] gi|326904148|gb|EGE51081.1| N utilization substance protein B nusB [Mycobacterium tuberculosis W-148] gi|328458157|gb|AEB03580.1| N utilization substance protein B nusB [Mycobacterium tuberculosis KZN 4207] Length = 156 Score = 67.8 bits (164), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 43/148 (29%), Positives = 75/148 (50%), Gaps = 12/148 (8%) Query: 6 NKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVD 65 ++K ++ H+ AR AV L++ ++ G S E++ +T A+ + D+ ++ Sbjct: 3 DRKPVRGRHQ---ARKRAVALLFEAEVRGISAAEVV---DTRAALAEAKPDIARLH---- 52 Query: 66 LEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEV 125 + + GV + HID LI++ L W+ RL + +ILR V EL+ VP V Sbjct: 53 -PYTAAVARGVSEHAAHIDDLITAHL-RGWTLDRLPAVDRAILRVSVWELLHAADVPEPV 110 Query: 126 IISEYVCIAHDFFYGDEPKFINAVLDKV 153 ++ E V +A + D P F+N VL +V Sbjct: 111 VVDEAVQLAKELSTDDSPGFVNGVLGQV 138 >gi|254282810|ref|ZP_04957778.1| transcription antitermination factor NusB [gamma proteobacterium NOR51-B] gi|219679013|gb|EED35362.1| transcription antitermination factor NusB [gamma proteobacterium NOR51-B] Length = 149 Score = 67.8 bits (164), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 47/144 (32%), Positives = 75/144 (52%), Gaps = 13/144 (9%) Query: 12 LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71 L+ RR AR A+QALYQ + TEI +E+ V++ + HVD E+F Sbjct: 8 LAARRRKARHYALQALYQWTMNRNDLTEIEAEFR-----------VDNDFSHVDGEYFHE 56 Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131 ++ G++ +D + L S S LD + ++LR G EL + VP +V I+E V Sbjct: 57 LLTGIVRTADSLDESLVPLLDR--SISELDPVERNLLRLGAFELRDRIDVPYKVAINEAV 114 Query: 132 CIAHDFFYGDEPKFINAVLDKVSR 155 +A F D +++N VLDK+++ Sbjct: 115 ALAKKFGATDSFRYVNGVLDKLAQ 138 >gi|31793715|ref|NP_856208.1| transcription antitermination protein NusB [Mycobacterium bovis AF2122/97] gi|121638417|ref|YP_978641.1| transcription antitermination protein NusB [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|215427926|ref|ZP_03425845.1| transcription antitermination protein NusB [Mycobacterium tuberculosis T92] gi|215431478|ref|ZP_03429397.1| transcription antitermination protein NusB [Mycobacterium tuberculosis EAS054] gi|219558534|ref|ZP_03537610.1| transcription antitermination protein NusB [Mycobacterium tuberculosis T17] gi|224990911|ref|YP_002645598.1| transcription antitermination protein [Mycobacterium bovis BCG str. Tokyo 172] gi|260187545|ref|ZP_05765019.1| transcription antitermination protein NusB [Mycobacterium tuberculosis CPHL_A] gi|260201657|ref|ZP_05769148.1| transcription antitermination protein NusB [Mycobacterium tuberculosis T46] gi|260205850|ref|ZP_05773341.1| transcription antitermination protein NusB [Mycobacterium tuberculosis K85] gi|289444068|ref|ZP_06433812.1| transcription antitermination factor NusB [Mycobacterium tuberculosis T46] gi|289448181|ref|ZP_06437925.1| N utilization substance protein B nusB [Mycobacterium tuberculosis CPHL_A] gi|289570699|ref|ZP_06450926.1| N utilization substance protein B nusB [Mycobacterium tuberculosis T17] gi|289575238|ref|ZP_06455465.1| N utilization substance protein B nusB [Mycobacterium tuberculosis K85] gi|289751150|ref|ZP_06510528.1| N utilization substance protein B nusB [Mycobacterium tuberculosis T92] gi|289754643|ref|ZP_06514021.1| transcription antitermination protein NusB [Mycobacterium tuberculosis EAS054] gi|39931755|sp|Q7TYC8|NUSB_MYCBO RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|166215697|sp|A1KLN0|NUSB_MYCBP RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|254772648|sp|C1AF01|NUSB_MYCBT RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|31619309|emb|CAD94747.1| N UTILIZATION SUBSTANCE PROTEIN NUSB (NUSB PROTEIN) [Mycobacterium bovis AF2122/97] gi|121494065|emb|CAL72543.1| N utilization substance protein nusB [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|224774024|dbj|BAH26830.1| transcription antitermination protein [Mycobacterium bovis BCG str. Tokyo 172] gi|289416987|gb|EFD14227.1| transcription antitermination factor NusB [Mycobacterium tuberculosis T46] gi|289421139|gb|EFD18340.1| N utilization substance protein B nusB [Mycobacterium tuberculosis CPHL_A] gi|289539669|gb|EFD44247.1| N utilization substance protein B nusB [Mycobacterium tuberculosis K85] gi|289544453|gb|EFD48101.1| N utilization substance protein B nusB [Mycobacterium tuberculosis T17] gi|289691737|gb|EFD59166.1| N utilization substance protein B nusB [Mycobacterium tuberculosis T92] gi|289695230|gb|EFD62659.1| transcription antitermination protein NusB [Mycobacterium tuberculosis EAS054] Length = 156 Score = 67.8 bits (164), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 43/148 (29%), Positives = 75/148 (50%), Gaps = 12/148 (8%) Query: 6 NKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVD 65 ++K ++ H+ AR AV L++ ++ G S E++ +T A+ + D+ ++ Sbjct: 3 DRKPVRGRHQ---ARKRAVDLLFEAEVRGISAAEVV---DTRAALAEAKPDIARLH---- 52 Query: 66 LEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEV 125 + + GV + HID LI++ L W+ RL + +ILR V EL+ VP V Sbjct: 53 -PYTAAVARGVSEHAAHIDDLITAHL-RGWTLDRLPAVDRAILRVSVWELLHAADVPEPV 110 Query: 126 IISEYVCIAHDFFYGDEPKFINAVLDKV 153 ++ E V +A + D P F+N VL +V Sbjct: 111 VVDEAVQLAKELSTDDSPGFVNGVLGQV 138 >gi|308371048|ref|ZP_07667079.1| putative transcription antitermination factor NusB [Mycobacterium tuberculosis SUMu003] gi|308373441|ref|ZP_07667582.1| putative transcription antitermination factor NusB [Mycobacterium tuberculosis SUMu005] gi|308377044|ref|ZP_07668414.1| putative transcription antitermination factor NusB [Mycobacterium tuberculosis SUMu008] gi|308378420|ref|ZP_07668745.1| putative transcription antitermination factor NusB [Mycobacterium tuberculosis SUMu009] gi|308405376|ref|ZP_07669465.1| putative transcription antitermination factor NusB [Mycobacterium tuberculosis SUMu012] gi|308330008|gb|EFP18859.1| putative transcription antitermination factor NusB [Mycobacterium tuberculosis SUMu003] gi|308337652|gb|EFP26503.1| putative transcription antitermination factor NusB [Mycobacterium tuberculosis SUMu005] gi|308349124|gb|EFP37975.1| putative transcription antitermination factor NusB [Mycobacterium tuberculosis SUMu008] gi|308352601|gb|EFP41452.1| putative transcription antitermination factor NusB [Mycobacterium tuberculosis SUMu009] gi|308365233|gb|EFP54084.1| putative transcription antitermination factor NusB [Mycobacterium tuberculosis SUMu012] Length = 249 Score = 67.4 bits (163), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 43/148 (29%), Positives = 75/148 (50%), Gaps = 12/148 (8%) Query: 6 NKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVD 65 ++K ++ H+ AR AV L++ ++ G S E++ +T A+ + D+ ++ Sbjct: 3 DRKPVRGRHQ---ARKRAVALLFEAEVRGISAAEVV---DTRAALAEAKPDIARLH---- 52 Query: 66 LEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEV 125 + + GV + HID LI++ L W+ RL + +ILR V EL+ VP V Sbjct: 53 -PYTAAVARGVSEHAAHIDDLITAHL-RGWTLDRLPAVDRAILRVSVWELLHAADVPEPV 110 Query: 126 IISEYVCIAHDFFYGDEPKFINAVLDKV 153 ++ E V +A + D P F+N VL +V Sbjct: 111 VVDEAVQLAKELSTDDSPGFVNGVLGQV 138 >gi|331006273|ref|ZP_08329591.1| Transcription termination protein NusB [gamma proteobacterium IMCC1989] gi|330419920|gb|EGG94268.1| Transcription termination protein NusB [gamma proteobacterium IMCC1989] Length = 152 Score = 67.4 bits (163), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 45/139 (32%), Positives = 68/139 (48%), Gaps = 12/139 (8%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 R AR +QALYQ + G + EI +E+ V++ H D ++F ++H Sbjct: 13 RRKARHFGMQALYQWSMTGAALNEIEAEFH-----------VDNDMTHTDTDYFHELVHE 61 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135 + R +D L ++ S LD + S+LR EL VP +V+I+E V +A Sbjct: 62 IPARVTELDEAYFPHLQDR-SVEELDPVTLSLLRLATYELAHRIDVPYKVVINEAVSLAK 120 Query: 136 DFFYGDEPKFINAVLDKVS 154 F D KFIN VLDK++ Sbjct: 121 KFGATDSFKFINGVLDKLA 139 >gi|77164321|ref|YP_342846.1| NusB antitermination factor [Nitrosococcus oceani ATCC 19707] gi|119390790|sp|Q3JCY0|NUSB_NITOC RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|76882635|gb|ABA57316.1| NusB antitermination factor [Nitrosococcus oceani ATCC 19707] Length = 148 Score = 67.0 bits (162), Expect = 9e-10, Method: Compositional matrix adjust. Identities = 42/145 (28%), Positives = 75/145 (51%), Gaps = 14/145 (9%) Query: 12 LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71 +S+RR AR AA+Q LYQ ++G +I D E V+ + +D +F+ Sbjct: 1 MSNRRSKARTAALQGLYQWQLMGQDVDKI-----------DIEFIVQDIR-GIDHAYFQE 48 Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131 ++ GV R+ +D + L + +D + C+ILR G EL+ +P V+++E + Sbjct: 49 LLRGVPQRQGELDECLGPFLDR--PINEVDPVECAILRIGAFELLCRPEIPYRVVLNEAI 106 Query: 132 CIAHDFFYGDEPKFINAVLDKVSRK 156 +A F +++N +LDKV++K Sbjct: 107 ELAKRFGAEHGHRYVNGILDKVAQK 131 >gi|15842067|ref|NP_337104.1| transcription antitermination protein NusB [Mycobacterium tuberculosis CDC1551] gi|13882348|gb|AAK46918.1| N utilization substance protein B [Mycobacterium tuberculosis CDC1551] Length = 290 Score = 67.0 bits (162), Expect = 9e-10, Method: Compositional matrix adjust. Identities = 43/148 (29%), Positives = 75/148 (50%), Gaps = 12/148 (8%) Query: 6 NKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVD 65 ++K ++ H+ AR AV L++ ++ G S E++ +T A+ + D+ ++ Sbjct: 3 DRKPVRGRHQ---ARKRAVALLFEAEVRGISAAEVV---DTRAALAEAKPDIARLH---- 52 Query: 66 LEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEV 125 + + GV + HID LI++ L W+ RL + +ILR V EL+ VP V Sbjct: 53 -PYTAAVARGVSEHAAHIDDLITAHL-RGWTLDRLPAVDRAILRVSVWELLHAADVPEPV 110 Query: 126 IISEYVCIAHDFFYGDEPKFINAVLDKV 153 ++ E V +A + D P F+N VL +V Sbjct: 111 VVDEAVQLAKELSTDDSPGFVNGVLGQV 138 >gi|15639999|ref|NP_219452.1| transcription antitermination protein NusB [Treponema pallidum subsp. pallidum str. Nichols] gi|189026238|ref|YP_001934010.1| transcription antitermination protein NusB [Treponema pallidum subsp. pallidum SS14] gi|7387973|sp|O83979|NUSB_TREPA RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|238689355|sp|B2S4Q2|NUSB_TREPS RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|3323342|gb|AAC65965.1| N utilization substance protein B (nusB) [Treponema pallidum subsp. pallidum str. Nichols] gi|189018813|gb|ACD71431.1| N utilization substance protein B [Treponema pallidum subsp. pallidum SS14] gi|291060372|gb|ADD73107.1| transcription antitermination factor NusB [Treponema pallidum subsp. pallidum str. Chicago] Length = 141 Score = 66.6 bits (161), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 47/145 (32%), Positives = 72/145 (49%), Gaps = 12/145 (8%) Query: 11 KLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFR 70 K+ RR AR+ A QAL+ D G T E ++++ R DL + R Sbjct: 7 KIGRRR--ARILAFQALFAWDAAGI-TPETLTQFTWLRRNPPPSTQ--------DLGFSR 55 Query: 71 VIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEY 130 ++ G ++ + ID +SS L E W F RL+ + +ILR L+ +P V+I E Sbjct: 56 LLFLGTLEHLREIDGCVSSRL-EHWDFVRLNKVDKAILRLSAYSLLFQKDIPPVVVIHEA 114 Query: 131 VCIAHDFFYGDEPKFINAVLDKVSR 155 V IA DF D +F+N VLD +++ Sbjct: 115 VSIARDFGTDDSFRFVNGVLDNIAK 139 >gi|152998045|ref|YP_001342880.1| NusB antitermination factor [Marinomonas sp. MWYL1] gi|226738905|sp|A6W2L6|NUSB_MARMS RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|150838969|gb|ABR72945.1| NusB antitermination factor [Marinomonas sp. MWYL1] Length = 174 Score = 66.6 bits (161), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 51/164 (31%), Positives = 81/164 (49%), Gaps = 16/164 (9%) Query: 1 MTIQDNKKDLKLSHR--RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVE 58 T +KD K S R +R A+QA+YQ + + +EI ++ F D + D++ Sbjct: 10 QTPAPKRKDKKPSRSQLRSASRRLALQAVYQWQMNKTAVSEIETQ-----FVIDQDRDMD 64 Query: 59 SVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIEC 118 S D +FR ++ GV + +D L L S LD I +++R G EL + Sbjct: 65 SC----DKVYFRELLQGVTASAKKLDTLFEELLDR--PLSELDPIELAVMRIGSYELSQR 118 Query: 119 HSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVS---RKEEI 159 VP V I+E V +A F + K++N +LDK++ R+EEI Sbjct: 119 LDVPYRVAINESVELAKGFGATESHKYVNGILDKLAQRVRREEI 162 >gi|167623143|ref|YP_001673437.1| transcription antitermination protein NusB [Shewanella halifaxensis HAW-EB4] gi|189035905|sp|B0TJZ1|NUSB_SHEHH RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|167353165|gb|ABZ75778.1| NusB antitermination factor [Shewanella halifaxensis HAW-EB4] Length = 135 Score = 66.6 bits (161), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 48/144 (33%), Positives = 73/144 (50%), Gaps = 14/144 (9%) Query: 10 LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF 69 +K S RR RLA VQA+Y + G + ++ E+ T E DV V D+ +F Sbjct: 1 MKPSERRKARRLA-VQAIYSWQLSGNNIADVEHEFLT-------EQDVAGV----DIAYF 48 Query: 70 RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISE 129 R ++ GV +K +D LI+ LT +D + +I+R EL VP +V I+E Sbjct: 49 RELLGGVATKKSQLDELITPFLTR--PLDEVDPVEKAIVRIATYELTFRKDVPYKVAINE 106 Query: 130 YVCIAHDFFYGDEPKFINAVLDKV 153 + +A F D KF+N +LDK+ Sbjct: 107 AIELAKAFGAEDGHKFVNGILDKL 130 >gi|119474641|ref|ZP_01614994.1| transcription antitermination protein NusB [marine gamma proteobacterium HTCC2143] gi|119450844|gb|EAW32077.1| transcription antitermination protein NusB [marine gamma proteobacterium HTCC2143] Length = 158 Score = 66.6 bits (161), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 49/153 (32%), Positives = 76/153 (49%), Gaps = 14/153 (9%) Query: 2 TIQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVY 61 I NK++ + RR AR +QALYQ + + +I +F AD + Sbjct: 3 NIVSNKQEFNPAARRK-ARHYGMQALYQWQMTKYAVKDI-----ELQFLADYDFS----- 51 Query: 62 LHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSV 121 VD+E+F I+H V + ++ + L + LD I S+LR G ELI+ + Sbjct: 52 -QVDVEYFHDIVHHVPANLEELEAAFTPYLDR--AMGDLDPIELSLLRLGSYELIKRIDI 108 Query: 122 PVEVIISEYVCIAHDFFYGDEPKFINAVLDKVS 154 P +V+I+E V +A F D K+IN VLDK++ Sbjct: 109 PYKVVINEAVSLAKKFGATDGHKYINGVLDKLA 141 >gi|119502844|ref|ZP_01624929.1| transcription antitermination protein NusB [marine gamma proteobacterium HTCC2080] gi|119461190|gb|EAW42280.1| transcription antitermination protein NusB [marine gamma proteobacterium HTCC2080] Length = 148 Score = 66.6 bits (161), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 42/133 (31%), Positives = 66/133 (49%), Gaps = 13/133 (9%) Query: 23 AVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQH 82 A+Q LYQ + + EI +E+ +++ + HVD E++R ++ GV+ Sbjct: 18 ALQGLYQWSMTRANLAEIEAEFR-----------IDNDFSHVDGEYYRSLLTGVVQDAGD 66 Query: 83 IDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDE 142 +D L LD + ++LR G EL E VP V+I+E V +A F D Sbjct: 67 LDSSFEQLLDRP--LDELDPVERALLRLGTFELKERIDVPYRVVINESVALAKKFGATDS 124 Query: 143 PKFINAVLDKVSR 155 ++IN VLDKV+R Sbjct: 125 YRYINGVLDKVAR 137 >gi|300114881|ref|YP_003761456.1| NusB antitermination factor [Nitrosococcus watsonii C-113] gi|299540818|gb|ADJ29135.1| NusB antitermination factor [Nitrosococcus watsonii C-113] Length = 148 Score = 66.2 bits (160), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 42/145 (28%), Positives = 73/145 (50%), Gaps = 14/145 (9%) Query: 12 LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71 +S+RR AR AA+Q LYQ + G +I D E V+ + +D +F+ Sbjct: 1 MSNRRSKARTAALQGLYQWQLTGQDVDKI-----------DIEFIVQDIR-GIDHAYFQA 48 Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131 ++ GV R+ +D + L +D + C+ILR G EL+ +P V+++E + Sbjct: 49 LLQGVPQRQWELDECLGPFLDR--PIHEIDPVECAILRIGAFELLCRPEIPYRVVLNEAI 106 Query: 132 CIAHDFFYGDEPKFINAVLDKVSRK 156 +A F +++N +LDKV++K Sbjct: 107 ELAKRFGAEHGHRYVNGILDKVAQK 131 >gi|94500355|ref|ZP_01306887.1| transcription antitermination protein NusB [Oceanobacter sp. RED65] gi|94427390|gb|EAT12368.1| transcription antitermination protein NusB [Oceanobacter sp. RED65] Length = 128 Score = 66.2 bits (160), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 43/132 (32%), Positives = 68/132 (51%), Gaps = 13/132 (9%) Query: 24 VQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHI 83 +QALYQ D+ G S + I +E F D ++ VD E+FR I+ GV + Sbjct: 1 MQALYQWDLAGASLSNIEAE-----FLTDNDMS------KVDTEYFRDILRGVPRELDDL 49 Query: 84 DLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEP 143 D ++ CL+ + + + +ILR G EL+ VP V+I+E V ++ F + Sbjct: 50 DEKLAPCLSR--NMQEVTPVERAILRLGAYELLHRIDVPYRVVINESVELSKKFGANESH 107 Query: 144 KFINAVLDKVSR 155 KFIN LDK+++ Sbjct: 108 KFINGALDKLAQ 119 >gi|297584560|ref|YP_003700340.1| NusB antitermination factor [Bacillus selenitireducens MLS10] gi|297143017|gb|ADH99774.1| NusB antitermination factor [Bacillus selenitireducens MLS10] Length = 134 Score = 66.2 bits (160), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 42/148 (28%), Positives = 71/148 (47%), Gaps = 18/148 (12%) Query: 15 RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74 +R +AR+ A+QALYQ+++ G + E I D + ++ Sbjct: 2 KRRVARIKAIQALYQVEMTGVNPEEAIKTVLEENESMDP--------------YLLTLVE 47 Query: 75 GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134 V++ +D+ I + + W SRL + +I+R + E+I VPV V I+E + +A Sbjct: 48 RVLEEMDELDIKIQDSM-DNWQLSRLARVDRAIMRIAMYEMIHSDDVPVSVAINEAIDLA 106 Query: 135 HDFFYGDEP--KFINAVLDKVSRKEEIK 160 F GDE KF+N VL ++K E+ Sbjct: 107 RG-FSGDEESGKFVNGVLSNAAKKLEVN 133 >gi|116327424|ref|YP_797144.1| transcription antitermination protein NusB [Leptospira borgpetersenii serovar Hardjo-bovis L550] gi|116331982|ref|YP_801700.1| transcription antitermination protein NusB [Leptospira borgpetersenii serovar Hardjo-bovis JB197] gi|122280285|sp|Q04Q78|NUSB_LEPBJ RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|122284775|sp|Q054N4|NUSB_LEPBL RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|116120168|gb|ABJ78211.1| Transcription antitermination protein [Leptospira borgpetersenii serovar Hardjo-bovis L550] gi|116125671|gb|ABJ76942.1| Transcription antitermination protein [Leptospira borgpetersenii serovar Hardjo-bovis JB197] Length = 138 Score = 66.2 bits (160), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 44/146 (30%), Positives = 76/146 (52%), Gaps = 13/146 (8%) Query: 12 LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71 +S RR +R AV ALYQ+++ G E++ +++ Y D + + E V Sbjct: 1 MSARR-TSREIAVMALYQLELTGPPLKEVL-KFKWY----DKKTEPEERDFAVS------ 48 Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131 I++GV+ ++ ID LI ++ W FSR+ ++ +ILR V L+ VP V I E V Sbjct: 49 IVNGVVKNQEQIDTLIKKY-SKNWDFSRISIVNKAILRLSVFALLYSWEVPKNVTIDEAV 107 Query: 132 CIAHDFFYGDEPKFINAVLDKVSRKE 157 + +F + +F+N +LD + + E Sbjct: 108 ELTKEFESEESARFVNGILDAILKNE 133 >gi|51244954|ref|YP_064838.1| transcription termination factor (NusB) [Desulfotalea psychrophila LSv54] gi|81642559|sp|Q6AP93|NUSB_DESPS RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|50875991|emb|CAG35831.1| probable transcription termination factor (NusB) [Desulfotalea psychrophila LSv54] Length = 141 Score = 66.2 bits (160), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 49/141 (34%), Positives = 69/141 (48%), Gaps = 12/141 (8%) Query: 16 RGIARLAAVQALYQIDIIGCST---TEIISEYETYRFCADTELDVESVYLHVDLEWFRVI 72 R AR AA+Q LYQ D I S E+ +E +FC +++ + ++L Sbjct: 4 RRFAREAALQFLYQDDFIPESADTPGELKERFE--QFCEIYQVNKKGRTYALNL------ 55 Query: 73 IHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVC 132 I GV+ ++ ID LI W SR+ ++LR E+ C VP EV I+E V Sbjct: 56 IAGVLADQEAIDRLIEEAAV-NWRMSRISATDRNLLRVATFEINFCDDVPAEVAINEAVE 114 Query: 133 IAHDFFYGDEPKFINAVLDKV 153 IA F + PKF+N VLD V Sbjct: 115 IAKRFCGDESPKFVNGVLDAV 135 >gi|92114700|ref|YP_574628.1| NusB antitermination factor [Chromohalobacter salexigens DSM 3043] gi|119390757|sp|Q1QUC9|NUSB_CHRSD RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|91797790|gb|ABE59929.1| NusB antitermination factor [Chromohalobacter salexigens DSM 3043] Length = 166 Score = 65.9 bits (159), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 48/145 (33%), Positives = 71/145 (48%), Gaps = 8/145 (5%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHV----DLEWFRV 71 R AR AVQ LYQ + G S T + SE+ AD +L+ + V DL F Sbjct: 15 RRAARELAVQGLYQWQMTGKSITAVESEFRAQ--IADEDLEDHENWHKVMGIADLALFHE 72 Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131 ++H V ++ ID I+ L + LD I +ILR G EL VP +I+E + Sbjct: 73 LLHNVAADREAIDKTIAPLLDRR--LEDLDRIELAILRLGAYELKYRLEVPYRAVINEGI 130 Query: 132 CIAHDFFYGDEPKFINAVLDKVSRK 156 +A F D K++N +LDK++ + Sbjct: 131 ELAKAFGATDGHKYVNGILDKLASR 155 >gi|254787582|ref|YP_003075011.1| transcription antitermination protein NusB [Teredinibacter turnerae T7901] gi|259514910|sp|C5BS84|NUSB_TERTT RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|237683677|gb|ACR10941.1| putative transcription antitermination factor NusB [Teredinibacter turnerae T7901] Length = 147 Score = 65.9 bits (159), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 46/139 (33%), Positives = 67/139 (48%), Gaps = 12/139 (8%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 R AR A+QA+YQ + G I +E+ T D ++ VD E+F + HG Sbjct: 8 RSRARHFAMQAIYQWQMNGNPLHVIEAEFHT-----DNDMS------KVDTEYFHELFHG 56 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135 V K +D L + +LD + ++LR EL VP +V+I+E V +A Sbjct: 57 VAADKSALDACFLPHL-KSLPLEKLDPVTLALLRQATFELKNRVDVPYKVVINEAVNLAK 115 Query: 136 DFFYGDEPKFINAVLDKVS 154 F D KF+N VLDKV+ Sbjct: 116 KFGAEDSHKFVNGVLDKVA 134 >gi|291279490|ref|YP_003496325.1| N utilization substance protein B [Deferribacter desulfuricans SSM1] gi|290754192|dbj|BAI80569.1| N utilization substance protein B [Deferribacter desulfuricans SSM1] Length = 139 Score = 65.5 bits (158), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 45/147 (30%), Positives = 74/147 (50%), Gaps = 11/147 (7%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 + IAR A + LYQ ++ +I ++ + D E + E V L + + FR++I Sbjct: 4 KSIAREKAFKMLYQAEMTNFKPDRLIKQF----WELDEEKN-EKVKLLAN-KLFRLVI-- 55 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135 D+K + D +IS L E W+F RL + + LR G+ EL + PV I+ EY +A Sbjct: 56 --DKKGYADDIISKYLKEGWTFERLTETVKNTLRLGIAELFNTET-PVYAILDEYTTLAK 112 Query: 136 DFFYGDEPKFINAVLDKVSRKEEIKRS 162 + F+N VL+K+ + I+R Sbjct: 113 KYEDEKAASFVNGVLEKIRKDFNIERG 139 >gi|157960994|ref|YP_001501028.1| transcription antitermination protein NusB [Shewanella pealeana ATCC 700345] gi|189035906|sp|A8H1Q6|NUSB_SHEPA RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|157845994|gb|ABV86493.1| NusB antitermination factor [Shewanella pealeana ATCC 700345] Length = 135 Score = 65.5 bits (158), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 47/144 (32%), Positives = 73/144 (50%), Gaps = 14/144 (9%) Query: 10 LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF 69 +K S RR RLA VQA+Y + G + ++ E+ T E DV V D+ +F Sbjct: 1 MKPSERRKARRLA-VQAIYSWQLSGNNIADVEHEFLT-------EQDVAGV----DIAYF 48 Query: 70 RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISE 129 R ++ GV +K +D LI+ +T +D + +I+R EL VP +V I+E Sbjct: 49 RELLGGVATKKSQLDELITPFVTR--PLDEVDPVEKAIVRIATYELTFRKDVPYKVAINE 106 Query: 130 YVCIAHDFFYGDEPKFINAVLDKV 153 + +A F D KF+N +LDK+ Sbjct: 107 AIELAKAFGAEDGHKFVNGILDKL 130 >gi|312134817|ref|YP_004002155.1| nusb antitermination factor [Caldicellulosiruptor owensensis OL] gi|311774868|gb|ADQ04355.1| NusB antitermination factor [Caldicellulosiruptor owensensis OL] Length = 134 Score = 65.5 bits (158), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 39/127 (30%), Positives = 67/127 (52%), Gaps = 7/127 (5%) Query: 36 STTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKW 95 + +II Y+ +R EL+ + + +D E+ ++ GV+ +Q ID LI ++ W Sbjct: 12 GSQDIIEFYKKFR-----ELNQDEDFRDIDEEYLEKLLKGVIQNQQRIDSLIEKY-SKDW 65 Query: 96 SFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSR 155 SRL M+ ++R V EL+ VPV V I E V +++ F P F+N +L +++ Sbjct: 66 PLSRLPMVELELMRVAVYELLFEEDVPVSVAIDEAVDLSNIFGIEKAPSFVNGILGRIA- 124 Query: 156 KEEIKRS 162 E+KR Sbjct: 125 ANEVKRG 131 >gi|89093481|ref|ZP_01166429.1| NusB protein [Oceanospirillum sp. MED92] gi|89082171|gb|EAR61395.1| NusB protein [Oceanospirillum sp. MED92] Length = 159 Score = 65.1 bits (157), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 45/150 (30%), Positives = 71/150 (47%), Gaps = 13/150 (8%) Query: 7 KKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDL 66 KK L+ +R AR A+QALY + G E+ +++ DT D+ Sbjct: 11 KKKPSLTTQRRNARSYALQALYSWTLAGQPLNELEAQFRVDNDMRDT-----------DI 59 Query: 67 EWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVI 126 F ++H + K +D L + L + LD I ++LR G EL + VP V Sbjct: 60 RLFSELLHSIAGGKSELDQLYTDFLDR--NVDELDPIELNVLRIGAYELSKRFEVPYRVA 117 Query: 127 ISEYVCIAHDFFYGDEPKFINAVLDKVSRK 156 I+E V +A F D K++N VLDK++++ Sbjct: 118 INESVELAKTFGATDSHKYVNGVLDKLAQR 147 >gi|302392489|ref|YP_003828309.1| NusB antitermination factor [Acetohalobium arabaticum DSM 5501] gi|302204566|gb|ADL13244.1| NusB antitermination factor [Acetohalobium arabaticum DSM 5501] Length = 138 Score = 64.7 bits (156), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 50/145 (34%), Positives = 68/145 (46%), Gaps = 12/145 (8%) Query: 14 HRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVII 73 + R AR AVQ LYQIDI E E T R L++E +L II Sbjct: 5 YSRHEARKIAVQTLYQIDI-NDEGLEKNLEMLTNRIEG---LELEDTFLEE-------II 53 Query: 74 HGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCI 133 G ID ++ E W SR+ + +ILR + E++ +P+EV I E V + Sbjct: 54 TGTYQNLSEIDKELNES-AEGWKVSRMGKVDRNILRLAIYEILYVDDIPIEVSIDEAVEL 112 Query: 134 AHDFFYGDEPKFINAVLDKVSRKEE 158 A +F PKFIN VL +V K+E Sbjct: 113 AKEFIADKSPKFINGVLGRVVSKQE 137 >gi|312127939|ref|YP_003992813.1| nusb antitermination factor [Caldicellulosiruptor hydrothermalis 108] gi|311777958|gb|ADQ07444.1| NusB antitermination factor [Caldicellulosiruptor hydrothermalis 108] Length = 134 Score = 64.7 bits (156), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 40/126 (31%), Positives = 66/126 (52%), Gaps = 7/126 (5%) Query: 37 TTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWS 96 T +II Y+ +R EL+ + + +D ++ ++ GV+ +Q ID LI ++ W Sbjct: 13 TQDIIEFYKKFR-----ELNQDEDFKDIDEKYLERLLKGVIQNQQRIDNLIEKY-SKDWP 66 Query: 97 FSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRK 156 SRL M+ ++R V EL+ VPV V I E V +A F P F+N +L +++ Sbjct: 67 LSRLPMVELELMRMAVYELLFEEEVPVSVAIDEAVDMASIFGIEKAPSFVNGILGRIA-A 125 Query: 157 EEIKRS 162 E+KR Sbjct: 126 NEVKRG 131 >gi|261856451|ref|YP_003263734.1| NusB antitermination factor [Halothiobacillus neapolitanus c2] gi|261836920|gb|ACX96687.1| NusB antitermination factor [Halothiobacillus neapolitanus c2] Length = 196 Score = 64.7 bits (156), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 46/136 (33%), Positives = 69/136 (50%), Gaps = 13/136 (9%) Query: 19 ARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMD 78 AR AVQALYQ I+ + +++ D + ++ L VDLE FR I+ GV Sbjct: 64 ARERAVQALYQ-QILNHTPVDLL----------DAQFMEDAFMLKVDLELFRRIVRGVSA 112 Query: 79 RKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFF 138 ++ +D S L + +D I +ILR G ELI +P V I+E V +A + Sbjct: 113 NEESLDEAYSPLLDR--PLAEIDPIEQAILRLGAFELIHTPEIPRAVAINEAVEMAKLYG 170 Query: 139 YGDEPKFINAVLDKVS 154 + K+IN VLDK++ Sbjct: 171 ATESHKYINGVLDKLA 186 >gi|326793813|ref|YP_004311633.1| NusB antitermination factor [Marinomonas mediterranea MMB-1] gi|326544577|gb|ADZ89797.1| NusB antitermination factor [Marinomonas mediterranea MMB-1] Length = 162 Score = 64.7 bits (156), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 48/156 (30%), Positives = 76/156 (48%), Gaps = 18/156 (11%) Query: 13 SHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVI 72 S R +R A+QA+YQ + + EI +T+ +E D +FR + Sbjct: 20 SQLRSASRGLALQAIYQWQMNHSAVNEI-----------ETQFTLEQDMSACDKVYFRDL 68 Query: 73 IHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVC 132 + GV + + +D L L + S LD I ++LR G EL VP V I+E V Sbjct: 69 LQGVTAKAKELDSLFEELLDR--ALSELDAIELAVLRIGSYELAHRLDVPYRVAINESVE 126 Query: 133 IAHDFFYGDEPKFINAVLDKVS---RKEEI--KRSG 163 +A F + K++N +LDK++ R+EEI +R+G Sbjct: 127 LAKSFGASESHKYVNGILDKLAQRVRREEIAARRNG 162 >gi|307825577|ref|ZP_07655795.1| NusB antitermination factor [Methylobacter tundripaludum SV96] gi|307733463|gb|EFO04322.1| NusB antitermination factor [Methylobacter tundripaludum SV96] Length = 144 Score = 64.7 bits (156), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 50/157 (31%), Positives = 77/157 (49%), Gaps = 18/157 (11%) Query: 12 LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTEL-DVESVYLHVDLEWFR 70 +S R AR AAVQALYQ + G + +EI +F + L D + Y F Sbjct: 1 MSQARTNARKAAVQALYQWQMAGQNLSEI-----ERQFLEEERLKDAQKSY-------FV 48 Query: 71 VIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEY 130 + +GV ID ++S + +D + +ILR GV EL+ ++P V+++E Sbjct: 49 ELFYGVPKNLDAIDQVLSEFVDR--PVDTIDPVERAILRIGVYELLYRLNMPYRVVLNEG 106 Query: 131 VCIAHDFFYGDEPKFINAVLDKV---SRKEEIKRSGC 164 + +A DF K++N +LDKV +R EIK G Sbjct: 107 INLAKDFGADGSHKYVNGILDKVAQQTRAGEIKAKGA 143 >gi|312622738|ref|YP_004024351.1| nusb antitermination factor [Caldicellulosiruptor kronotskyensis 2002] gi|312203205|gb|ADQ46532.1| NusB antitermination factor [Caldicellulosiruptor kronotskyensis 2002] Length = 134 Score = 64.3 bits (155), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 40/126 (31%), Positives = 66/126 (52%), Gaps = 7/126 (5%) Query: 37 TTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWS 96 T +II Y+ +R EL+ + + +D ++ ++ GV+ +Q ID LI ++ W Sbjct: 13 TQDIIEFYKRFR-----ELNQDEDFKDIDEKYLEKLLKGVIQNQQRIDNLIEKY-SKDWP 66 Query: 97 FSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRK 156 SRL M+ ++R V EL+ VPV V I E V +A F P F+N +L +++ Sbjct: 67 LSRLPMVELELMRIAVYELLFEEEVPVSVAIDEAVDMASIFGIEKAPSFVNGILGRIA-A 125 Query: 157 EEIKRS 162 E+KR Sbjct: 126 NEVKRG 131 >gi|54307996|ref|YP_129016.1| transcription antitermination protein NusB [Photobacterium profundum SS9] gi|81615463|sp|Q6LU11|NUSB_PHOPR RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|46912422|emb|CAG19214.1| Putative NusB protein [Photobacterium profundum SS9] Length = 151 Score = 64.3 bits (155), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 43/148 (29%), Positives = 75/148 (50%), Gaps = 6/148 (4%) Query: 10 LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYL---HVDL 66 +K + RR AR A+QA+Y I + EI ++ + + E ++ L H DL Sbjct: 1 MKPAARRN-ARHFAIQAIYSWQITKGNVAEIEQQFLSDDKFEEEEHQADAPILAAPHTDL 59 Query: 67 EWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVI 126 +F +++GV+ Q +D + L+ LD + ++LR + E+ + VP +V+ Sbjct: 60 NYFHDLLNGVVQNHQELDSKMRPYLSR--PLQDLDQMELALLRLAMYEMTKREDVPYKVV 117 Query: 127 ISEYVCIAHDFFYGDEPKFINAVLDKVS 154 I+E + +A F D KF+N VLDK + Sbjct: 118 INEAIELAKIFGAEDSHKFVNGVLDKAA 145 >gi|289208845|ref|YP_003460911.1| NusB antitermination factor [Thioalkalivibrio sp. K90mix] gi|288944476|gb|ADC72175.1| NusB antitermination factor [Thioalkalivibrio sp. K90mix] Length = 187 Score = 64.3 bits (155), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 44/144 (30%), Positives = 69/144 (47%), Gaps = 13/144 (9%) Query: 11 KLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFR 70 + H R +AR A+QALY + +I++E F D E + D E+FR Sbjct: 45 RARHARSVARRRAMQALYSWQMTAAEPKDILAE-----FRDDEE------HAKADAEYFR 93 Query: 71 VIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEY 130 I+ GV ++ +D + L +LD + ++L G EL E VP V+I+E Sbjct: 94 EILIGVTRNREALDARMEPYLGR--PLDQLDPVERALLWLGQWELAERIDVPYRVVINEA 151 Query: 131 VCIAHDFFYGDEPKFINAVLDKVS 154 V +A F ++IN VLD++S Sbjct: 152 VDLAKRFGAEQSHRYINGVLDRLS 175 >gi|256826969|ref|YP_003150928.1| transcription antitermination factor NusB [Cryptobacterium curtum DSM 15641] gi|256583112|gb|ACU94246.1| transcription antitermination factor NusB [Cryptobacterium curtum DSM 15641] Length = 162 Score = 64.3 bits (155), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 43/146 (29%), Positives = 76/146 (52%), Gaps = 16/146 (10%) Query: 14 HRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV-I 72 H R +AR AVQ LY+ +I +EI+ L ++V L + V + Sbjct: 5 HERTLARRMAVQVLYEGEITDTLASEIV-------------LRPDAVPDGGALPAYAVSL 51 Query: 73 IHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVC 132 + GV + ID I++ +E WS R+ ++ +I+R V E+ C VP+ V I+E V Sbjct: 52 VEGVCAHRVAIDNKIAAA-SENWSVGRMPLVDRAIMRLAVFEMTHCDDVPLSVSINEAVE 110 Query: 133 IAHDFFYGDE-PKFINAVLDKVSRKE 157 +A +F D+ +F+N +L +++R++ Sbjct: 111 LAKEFGGADDSARFVNGILGRIARQD 136 >gi|325295064|ref|YP_004281578.1| NusB antitermination factor [Desulfurobacterium thermolithotrophum DSM 11699] gi|325065512|gb|ADY73519.1| NusB antitermination factor [Desulfurobacterium thermolithotrophum DSM 11699] Length = 140 Score = 63.9 bits (154), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 53/165 (32%), Positives = 79/165 (47%), Gaps = 34/165 (20%) Query: 1 MTIQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADT----ELD 56 MT +D KK AR A +YQ D+ G S EI + + D E+ Sbjct: 1 MTNRDKKK----------AREHAYLMMYQYDLGGLSPEEI-----AFNYWEDNKESEEIK 45 Query: 57 VESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELI 116 + YL F+ + + ++ID+ IS L + W SRL + SILR E+ Sbjct: 46 QMATYL------FKKTVENL----KNIDIEISRHLKKGWLISRLMPMDRSILRVATYEIS 95 Query: 117 ECHSVPVEVIISEYVCIAHDFFYGDE---PKFINAVLDKVSRKEE 158 P+E +I++ V A FYG++ PKFINA+LDKV++ +E Sbjct: 96 NESFSPIEAVINDAVDAAK--FYGEDEKSPKFINAILDKVAKNKE 138 >gi|253682288|ref|ZP_04863085.1| transcription antitermination factor NusB [Clostridium botulinum D str. 1873] gi|253562000|gb|EES91452.1| transcription antitermination factor NusB [Clostridium botulinum D str. 1873] Length = 135 Score = 63.9 bits (154), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 45/137 (32%), Positives = 67/137 (48%), Gaps = 11/137 (8%) Query: 14 HRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVII 73 +RR +R A++ L+++ I EII ++ DT L VD E+ II Sbjct: 2 NRRK-SREIAMKLLFEMSINKEELKEII---HNFKENTDTSLK------DVDFEYINKII 51 Query: 74 HGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCI 133 GV D + ID I LT KW +RL I +ILR E+I +P +V ++E + + Sbjct: 52 QGVQDNIETIDSKIEENLT-KWKLNRLSKIDLTILRISTYEIIFVEDIPEKVAVNEGIEL 110 Query: 134 AHDFFYGDEPKFINAVL 150 A + + P FIN VL Sbjct: 111 AKKYSAENSPAFINGVL 127 >gi|292492483|ref|YP_003527922.1| transcription antitermination factor NusB [Nitrosococcus halophilus Nc4] gi|291581078|gb|ADE15535.1| transcription antitermination factor NusB [Nitrosococcus halophilus Nc4] Length = 150 Score = 63.9 bits (154), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 41/148 (27%), Positives = 72/148 (48%), Gaps = 20/148 (13%) Query: 12 LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLH---VDLEW 68 +S+ R AR AA+Q LYQ + G I DV ++ +D + Sbjct: 1 MSNNRSKARAAALQGLYQWQLTGQDVDTI---------------DVGFIFQGTRGIDQAY 45 Query: 69 FRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIIS 128 F+ ++ GV ++Q +D + L + +D + C+ILR G EL+ +P V+++ Sbjct: 46 FQELLQGVPQQQQALDECLGPFLDR--PINEVDPVECTILRIGAFELLFRSDIPYRVVLN 103 Query: 129 EYVCIAHDFFYGDEPKFINAVLDKVSRK 156 E + +A F +++N +LDKV+RK Sbjct: 104 EAIELAKRFGAEHGHRYVNGILDKVARK 131 >gi|170760171|ref|YP_001787214.1| transcription antitermination protein NusB [Clostridium botulinum A3 str. Loch Maree] gi|238688744|sp|B1KT54|NUSB_CLOBM RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|169407160|gb|ACA55571.1| N utilization substance protein B [Clostridium botulinum A3 str. Loch Maree] Length = 141 Score = 63.9 bits (154), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 44/139 (31%), Positives = 67/139 (48%), Gaps = 2/139 (1%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLH-VDLEWFRVIIH 74 R +R A++ L+Q + G + E + + R D E D ESV L VD+++ + II Sbjct: 3 RRKSREVAMRLLFQTTLNGENLEEALENLKDVRESEDKEKDYESVDLKDVDIDYVKRIIK 62 Query: 75 GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134 G+ K+ ID I L + W RL + SILR EL +P V ++E + +A Sbjct: 63 GIEKNKEEIDGKIKGNL-KNWKIERLSKVDLSILRLCTYELKFEEDIPKRVSVNEAIELA 121 Query: 135 HDFFYGDEPKFINAVLDKV 153 + FIN VL K+ Sbjct: 122 KKYSGEKSATFINGVLGKM 140 >gi|42520134|ref|NP_966049.1| N utilization substance protein B, putative [Wolbachia endosymbiont of Drosophila melanogaster] gi|58698971|ref|ZP_00373826.1| transcription antitermination factor NusB [Wolbachia endosymbiont of Drosophila ananassae] gi|225630058|ref|YP_002726849.1| N utilization substance protein B, putative [Wolbachia sp. wRi] gi|42409871|gb|AAS13983.1| N utilization substance protein B, putative [Wolbachia endosymbiont of Drosophila melanogaster] gi|58534511|gb|EAL58655.1| transcription antitermination factor NusB [Wolbachia endosymbiont of Drosophila ananassae] gi|225592039|gb|ACN95058.1| N utilization substance protein B, putative [Wolbachia sp. wRi] Length = 160 Score = 63.9 bits (154), Expect = 8e-09, Method: Compositional matrix adjust. Identities = 50/158 (31%), Positives = 73/158 (46%), Gaps = 27/158 (17%) Query: 9 DLKLSHRRGIARLAAVQALYQIDIIG----------CSTTEIISEYETYRFCADTELDVE 58 D K +R AR AVQ Y +G C + I++ + C + E Sbjct: 7 DKKWRIKRSTARFLAVQIAYSNIFVGYNKSTFKLENCELKDYINKLKDIFECEEFE---- 62 Query: 59 SVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIEC 118 H ++ +++ V+ + D +I S L WS SRL++I SILR + EL C Sbjct: 63 ----H---QFLENLLYKVIKSSEEYDKIIESYLHPSWSLSRLNLISLSILRVAICELANC 115 Query: 119 HSVPVEVIISEYVCIAHDFFYGDEPK---FINAVLDKV 153 + PV V+I+EY IA D D+P FIN +LDK Sbjct: 116 DT-PVPVVINEYTNIASDLL--DKPSEIGFINGLLDKA 150 >gi|212634192|ref|YP_002310717.1| transcription antitermination protein NusB [Shewanella piezotolerans WP3] gi|226738906|sp|B8CJN3|NUSB_SHEPW RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|212555676|gb|ACJ28130.1| Antitermination protein NusB [Shewanella piezotolerans WP3] Length = 135 Score = 63.9 bits (154), Expect = 8e-09, Method: Compositional matrix adjust. Identities = 46/144 (31%), Positives = 73/144 (50%), Gaps = 14/144 (9%) Query: 10 LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF 69 +K S RR RLA VQA+Y + G + ++ E+ T E +V+ V D+ +F Sbjct: 1 MKPSERRKARRLA-VQAIYSWQLSGNNIADVEHEFLT-------EQNVDGV----DIAYF 48 Query: 70 RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISE 129 R ++ GV +K +D LI+ L +D + +I+R EL VP +V I+E Sbjct: 49 RELLGGVATKKSQLDELITPFLVR--PMDEVDPVEKAIVRLAAYELTFRKDVPYKVAINE 106 Query: 130 YVCIAHDFFYGDEPKFINAVLDKV 153 + +A F D KF+N +LDK+ Sbjct: 107 AIELAKAFGAEDGHKFVNGILDKL 130 >gi|90410900|ref|ZP_01218914.1| transcription antitermination protein NusB [Photobacterium profundum 3TCK] gi|90328113|gb|EAS44424.1| transcription antitermination protein NusB [Photobacterium profundum 3TCK] Length = 155 Score = 63.5 bits (153), Expect = 8e-09, Method: Compositional matrix adjust. Identities = 43/149 (28%), Positives = 76/149 (51%), Gaps = 6/149 (4%) Query: 9 DLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYL---HVD 65 ++K + RR AR A+QA+Y I + EI ++ + + E ++ L H D Sbjct: 4 NVKPAARRN-ARHFAIQAIYSWQITKGNVAEIEQQFLSDDKFEEEEHQADAPSLAAPHTD 62 Query: 66 LEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEV 125 L +F +++GV+ Q +D + L+ LD + ++LR + E+ + VP +V Sbjct: 63 LNYFHDLLNGVVQNHQELDSKMRPYLSR--PLQDLDQMELALLRLAMYEMTKRDDVPYKV 120 Query: 126 IISEYVCIAHDFFYGDEPKFINAVLDKVS 154 +I+E + +A F D KF+N VLDK + Sbjct: 121 VINEAIELAKLFGAEDSHKFVNGVLDKAA 149 >gi|149194728|ref|ZP_01871823.1| N utilization substance protein B [Caminibacter mediatlanticus TB-2] gi|149135151|gb|EDM23632.1| N utilization substance protein B [Caminibacter mediatlanticus TB-2] Length = 136 Score = 63.5 bits (153), Expect = 9e-09, Method: Compositional matrix adjust. Identities = 43/137 (31%), Positives = 71/137 (51%), Gaps = 13/137 (9%) Query: 19 ARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMD 78 AR A +Q LY ++ + I++++ EL E E+ + +++GV++ Sbjct: 7 AREAVIQTLYAKEL---GNDDAINQFD--------ELLKERKIKGQKAEFAKKLLNGVLE 55 Query: 79 RKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFF 138 ID +I + L + WSF RLD + ILR G+ E I+ P +++I E V IA +F Sbjct: 56 HINEIDEIIKNHLID-WSFDRLDKVDKQILRTGIYE-IKYTDTPYQIVIDEAVKIAKNFS 113 Query: 139 YGDEPKFINAVLDKVSR 155 FIN +LDKV++ Sbjct: 114 EDKSKNFINGILDKVAK 130 >gi|222528993|ref|YP_002572875.1| NusB antitermination factor [Caldicellulosiruptor bescii DSM 6725] gi|222455840|gb|ACM60102.1| NusB antitermination factor [Caldicellulosiruptor bescii DSM 6725] Length = 134 Score = 63.5 bits (153), Expect = 9e-09, Method: Compositional matrix adjust. Identities = 39/127 (30%), Positives = 67/127 (52%), Gaps = 7/127 (5%) Query: 36 STTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKW 95 +T +II Y+ +R EL+ + + +D ++ ++ GV+ +Q ID +I ++ W Sbjct: 12 NTQDIIEFYKKFR-----ELNQDEDFKDIDEKYLERLLKGVIQNQQKIDNIIEKY-SKDW 65 Query: 96 SFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSR 155 SRL M+ ++R V EL+ VPV V I E V +A F P F+N +L +++ Sbjct: 66 PLSRLPMVELELMRIAVYELLFEEEVPVSVAIDEAVDMASIFGIEKAPSFVNGILGRIA- 124 Query: 156 KEEIKRS 162 E+KR Sbjct: 125 ANEVKRG 131 >gi|257063533|ref|YP_003143205.1| transcription antitermination factor NusB [Slackia heliotrinireducens DSM 20476] gi|256791186|gb|ACV21856.1| transcription antitermination factor NusB [Slackia heliotrinireducens DSM 20476] Length = 183 Score = 63.5 bits (153), Expect = 9e-09, Method: Compositional matrix adjust. Identities = 41/140 (29%), Positives = 71/140 (50%), Gaps = 14/140 (10%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 R + R AA+Q LY+ DI+G +++ E + E L+ ++ R ++ G Sbjct: 7 RTLGRRAALQVLYESDILGTPVDKVVDEG----------VVPEEAALN---DYARRLLLG 53 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135 V ID IS ++ W+ R+ ++ ++LR V E+ VPV V I+E V +A Sbjct: 54 VASHITDIDRQISKS-SKNWAIDRMPLVDRALLRITVFEMQHVDEVPVAVSINEAVELAK 112 Query: 136 DFFYGDEPKFINAVLDKVSR 155 DF D +F+N +L +++R Sbjct: 113 DFGGDDTYRFVNGILGRIAR 132 >gi|24213164|ref|NP_710645.1| transcription antitermination protein NusB [Leptospira interrogans serovar Lai str. 56601] gi|32171656|sp|Q8F8T8|NUSB_LEPIN RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|61214188|sp|Q72V97|NUSB_LEPIC RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|24193877|gb|AAN47663.1| transcription antitermination protein NusB [Leptospira interrogans serovar Lai str. 56601] Length = 138 Score = 63.5 bits (153), Expect = 9e-09, Method: Compositional matrix adjust. Identities = 47/152 (30%), Positives = 78/152 (51%), Gaps = 14/152 (9%) Query: 12 LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71 +S RR +R AV ALYQ+++ E++ +++ Y D + + E V Sbjct: 1 MSARR-TSREIAVMALYQLELTQPPLKEVL-KFKWY----DKKTEPEERDFAVS------ 48 Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131 I++GV+ ++ ID LI ++ W FSR+ ++ +ILR + L+ VP V I E V Sbjct: 49 IVNGVVKNQEQIDTLIKKY-SKNWDFSRISIVNKAILRLSIYALLYTWEVPKNVTIDEAV 107 Query: 132 CIAHDFFYGDEPKFINAVLDKVSRKEEIKRSG 163 + +F + +F+N VLD + K EIK G Sbjct: 108 ELTKEFESEESARFVNGVLDAI-LKNEIKSDG 138 >gi|87121731|ref|ZP_01077618.1| NusB protein [Marinomonas sp. MED121] gi|86162982|gb|EAQ64260.1| NusB protein [Marinomonas sp. MED121] Length = 167 Score = 63.5 bits (153), Expect = 9e-09, Method: Compositional matrix adjust. Identities = 48/150 (32%), Positives = 71/150 (47%), Gaps = 16/150 (10%) Query: 13 SHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVI 72 S R AR A+QA+YQ + EI ++ F D +L D +FR + Sbjct: 24 SQLRSAARSFALQAVYQWQMNHAPVNEIEAQ-----FAVDHDLGT------CDKAYFREL 72 Query: 73 IHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVC 132 + GV + + +D L L + LD I + LR G EL E VP V I+E V Sbjct: 73 LQGVTAKAKSLDDLFEELLDR--PLAELDPIELATLRIGSYELAERLDVPYRVAINESVE 130 Query: 133 IAHDFFYGDEPKFINAVLDKVS---RKEEI 159 +A F + K++N +LDK++ R+EEI Sbjct: 131 LAKSFGASESHKYVNGILDKLAQRVRREEI 160 >gi|146308867|ref|YP_001189332.1| transcription antitermination protein NusB [Pseudomonas mendocina ymp] gi|145577068|gb|ABP86600.1| NusB antitermination factor [Pseudomonas mendocina ymp] Length = 159 Score = 63.5 bits (153), Expect = 9e-09, Method: Compositional matrix adjust. Identities = 43/138 (31%), Positives = 67/138 (48%), Gaps = 13/138 (9%) Query: 19 ARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMD 78 AR A+QALY I G EI +++ V++ + VD +F I+HGV Sbjct: 24 ARTLAMQALYSWHIAGQPLNEIEAQFR-----------VDNDFSKVDGAYFHEILHGVPR 72 Query: 79 RKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFF 138 +K +D + L +D + +ILR EL VP +V+I+E + +A F Sbjct: 73 QKTELDEAFTPLLDR--PLEEIDPVELAILRLSTYELKNRVDVPYKVVINEGIELAKVFG 130 Query: 139 YGDEPKFINAVLDKVSRK 156 D KF+N +LDK++ K Sbjct: 131 ATDGHKFVNGILDKLAPK 148 >gi|331269441|ref|YP_004395933.1| transcription antitermination factor NusB [Clostridium botulinum BKT015925] gi|329125991|gb|AEB75936.1| transcription antitermination factor NusB [Clostridium botulinum BKT015925] Length = 135 Score = 63.5 bits (153), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 43/137 (31%), Positives = 70/137 (51%), Gaps = 11/137 (8%) Query: 14 HRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVII 73 +RR +R A++ L+++ I EII + F +T+ +++ V D E+ II Sbjct: 2 NRRK-SREIAMKLLFEMSINKEELKEII-----HNFKENTDTNLKDV----DFEYINKII 51 Query: 74 HGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCI 133 GV D + ID I LT KW +RL + +ILR E++ VP +V ++E + + Sbjct: 52 QGVQDNIEDIDSKIEENLT-KWKLNRLSKMDLTILRISTYEIMFMEDVPEKVAVNEGIEL 110 Query: 134 AHDFFYGDEPKFINAVL 150 A + + P FIN VL Sbjct: 111 AKKYSAENSPAFINGVL 127 >gi|330830919|ref|YP_004393871.1| N utilization substance protein B [Aeromonas veronii B565] gi|328806055|gb|AEB51254.1| N utilization substance protein B [Aeromonas veronii B565] Length = 137 Score = 63.5 bits (153), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 47/144 (32%), Positives = 70/144 (48%), Gaps = 14/144 (9%) Query: 10 LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF 69 +K S RR AR A QA+YQ + + +I E ++ DT+ VDL +F Sbjct: 1 MKPSERRK-ARHCATQAIYQWQMTKANVGDI---EEQFKIDQDTK--------GVDLNYF 48 Query: 70 RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISE 129 R ++ GV +D + + L+ +DM+ +ILR EL VP V+I+E Sbjct: 49 RDLLFGVALHCSELDKVFAPFLSR--PLEEVDMVDKAILRLATYELTRRDDVPPRVVINE 106 Query: 130 YVCIAHDFFYGDEPKFINAVLDKV 153 + +A F D KF+N VLDKV Sbjct: 107 AIELAKAFAADDSHKFVNGVLDKV 130 >gi|145298021|ref|YP_001140862.1| antitermination protein NusB [Aeromonas salmonicida subsp. salmonicida A449] gi|254772606|sp|A4SJP2|NUSB_AERS4 RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|142850793|gb|ABO89114.1| Antitermination protein NusB [Aeromonas salmonicida subsp. salmonicida A449] Length = 137 Score = 63.5 bits (153), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 47/144 (32%), Positives = 70/144 (48%), Gaps = 14/144 (9%) Query: 10 LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF 69 +K S RR AR A QA+YQ + + +I E ++ DT+ VDL +F Sbjct: 1 MKPSERRK-ARHCATQAIYQWQMTRANVGDI---EEQFKIDQDTK--------GVDLNYF 48 Query: 70 RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISE 129 R ++ GV +D + + L+ +DM+ +ILR EL VP V+I+E Sbjct: 49 RDLLFGVALHCNELDKVFAPFLSR--PLEEVDMVDKAILRLATYELTRRDDVPPRVVINE 106 Query: 130 YVCIAHDFFYGDEPKFINAVLDKV 153 + +A F D KF+N VLDKV Sbjct: 107 AIELAKAFAADDSHKFVNGVLDKV 130 >gi|306807668|ref|ZP_07444336.1| putative transcription antitermination factor NusB [Mycobacterium tuberculosis SUMu007] gi|308345910|gb|EFP34761.1| putative transcription antitermination factor NusB [Mycobacterium tuberculosis SUMu007] Length = 232 Score = 63.2 bits (152), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 37/127 (29%), Positives = 64/127 (50%), Gaps = 9/127 (7%) Query: 27 LYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLL 86 L++ ++ G S E++ +T A+ + D+ ++ + + GV + HID L Sbjct: 4 LFEAEVRGISAAEVV---DTRAALAEAKPDIARLH-----PYTAAVARGVSEHAAHIDDL 55 Query: 87 ISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFI 146 I++ L W+ RL + +ILR V EL+ VP V++ E V +A + D P F+ Sbjct: 56 ITAHL-RGWTLDRLPAVDRAILRVSVWELLHAADVPEPVVVDEAVQLAKELSTDDSPGFV 114 Query: 147 NAVLDKV 153 N VL +V Sbjct: 115 NGVLGQV 121 >gi|77919050|ref|YP_356865.1| transcription antitermination factor NusB [Pelobacter carbinolicus DSM 2380] gi|119390793|sp|Q3A4L2|NUSB_PELCD RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|77545133|gb|ABA88695.1| NusB antitermination factor [Pelobacter carbinolicus DSM 2380] Length = 156 Score = 63.2 bits (152), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 45/148 (30%), Positives = 70/148 (47%), Gaps = 7/148 (4%) Query: 13 SHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADT-----ELDVESVYLHVDLE 67 S R R A++ +Y D G + + + +RF D E ++V V E Sbjct: 3 SGMRRTGRELAIKIIYSFDGTGSVEALLATFWSNFRFRDDVLGEPLEDSSQAVAEPVR-E 61 Query: 68 WFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVII 127 + ++ GV + + ID LI T WS R+ + +ILR EL+ VPV VII Sbjct: 62 FAEDLVRGVAENLEKIDGLIGEFST-NWSLERMARVDLAILRMATYELLGHLDVPVSVII 120 Query: 128 SEYVCIAHDFFYGDEPKFINAVLDKVSR 155 +E V I + + P F+N +LD++SR Sbjct: 121 NEAVEIGKRYGTKETPSFVNGILDRISR 148 >gi|117620704|ref|YP_857817.1| transcription antitermination factor NusB [Aeromonas hydrophila subsp. hydrophila ATCC 7966] gi|254772605|sp|A0KNG6|NUSB_AERHH RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|117562111|gb|ABK39059.1| transcription antitermination factor NusB [Aeromonas hydrophila subsp. hydrophila ATCC 7966] Length = 137 Score = 63.2 bits (152), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 47/144 (32%), Positives = 69/144 (47%), Gaps = 14/144 (9%) Query: 10 LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF 69 +K S RR AR A QA+YQ + + +I E ++ DT+ VDL +F Sbjct: 1 MKPSERRK-ARHCATQAIYQWQMTKANVGDI---EEQFKIDQDTK--------GVDLNYF 48 Query: 70 RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISE 129 R ++ GV +D + + L+ +DM+ +ILR EL VP V I+E Sbjct: 49 RDLLFGVALHCNELDKVFAPFLSR--PLEEVDMVDKAILRLATYELTRRDDVPPRVAINE 106 Query: 130 YVCIAHDFFYGDEPKFINAVLDKV 153 + +A F D KF+N VLDKV Sbjct: 107 AIELAKSFAADDSHKFVNGVLDKV 130 >gi|168186196|ref|ZP_02620831.1| transcription antitermination factor NusB [Clostridium botulinum C str. Eklund] gi|169295703|gb|EDS77836.1| transcription antitermination factor NusB [Clostridium botulinum C str. Eklund] Length = 133 Score = 62.8 bits (151), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 40/142 (28%), Positives = 73/142 (51%), Gaps = 11/142 (7%) Query: 14 HRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVII 73 +RR +R A++ L+++ I +EI+ F +T+ ++E +VD + I+ Sbjct: 2 NRRK-SREVAMKLLFEMSINKEEFSEILK-----NFKENTDTNME----NVDFVYINKIV 51 Query: 74 HGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCI 133 +G+ K+ ID I LT KW +RL I +ILR E++ +P +V ++E + + Sbjct: 52 NGIEQNKEDIDKRIEENLT-KWKLNRLSKIDLTILRISTYEIMFMEDIPNKVAVNEAIEL 110 Query: 134 AHDFFYGDEPKFINAVLDKVSR 155 A + + P F+N VL + R Sbjct: 111 AKKYSADNSPAFVNGVLGNMIR 132 >gi|77361286|ref|YP_340861.1| transcription termination factor [Pseudoalteromonas haloplanktis TAC125] gi|119390799|sp|Q3II29|NUSB_PSEHT RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|76876197|emb|CAI87419.1| transcription termination factor [Pseudoalteromonas haloplanktis TAC125] Length = 136 Score = 62.8 bits (151), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 45/144 (31%), Positives = 73/144 (50%), Gaps = 14/144 (9%) Query: 10 LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF 69 +K + RR AR+ A+QA+Y + G + +I + ++ +E+ +D+E+F Sbjct: 1 MKPAARRK-ARILALQAIYSWQLSGNAIADI-----------EQQMLIENDVTKIDVEYF 48 Query: 70 RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISE 129 + + GV + +D +S LT F LDM+ +ILR EL VP +V I+E Sbjct: 49 KDLASGVAVNYKQLDEAVSPHLTR--PFDELDMVERAILRLSSYELKFREDVPYKVAINE 106 Query: 130 YVCIAHDFFYGDEPKFINAVLDKV 153 + +A F D KF+N VLDK Sbjct: 107 SIELAKMFGAEDSHKFVNGVLDKA 130 >gi|51892987|ref|YP_075678.1| transcription termination factor [Symbiobacterium thermophilum IAM 14863] gi|81610502|sp|Q67NA9|NUSB_SYMTH RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|51856676|dbj|BAD40834.1| transcription termination factor [Symbiobacterium thermophilum IAM 14863] Length = 153 Score = 62.8 bits (151), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 44/147 (29%), Positives = 70/147 (47%), Gaps = 12/147 (8%) Query: 12 LSHRRGIARLAAVQALYQIDIIGCSTTEIISE---YETYRFCADTELDVESVYLHVDLEW 68 +S R+ AR A+QAL+Q+DI G +++ ET A L+ ES E+ Sbjct: 1 MSRRK--ARELALQALFQMDIAGTDPDTAVAQALTRETEPDWAPDRLEEESA------EF 52 Query: 69 FRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIIS 128 R ++ G ++ D LI+ W R+ + +ILR V E++ VP V ++ Sbjct: 53 ARRLVRGAWQHREESDRLIAQ-YARGWRVERMAAVDRAILRMAVYEIVHSEDVPDSVAVA 111 Query: 129 EYVCIAHDFFYGDEPKFINAVLDKVSR 155 E V +A F D +F+N +L V R Sbjct: 112 EAVELAKTFSTADSSRFVNGILGSVIR 138 >gi|254360609|ref|ZP_04976758.1| N utilization substance B [Mannheimia haemolytica PHL213] gi|261493373|ref|ZP_05989899.1| N utilization substance B [Mannheimia haemolytica serotype A2 str. BOVINE] gi|261496639|ref|ZP_05993019.1| N utilization substance B [Mannheimia haemolytica serotype A2 str. OVINE] gi|153091149|gb|EDN73154.1| N utilization substance B [Mannheimia haemolytica PHL213] gi|261307842|gb|EEY09165.1| N utilization substance B [Mannheimia haemolytica serotype A2 str. OVINE] gi|261311017|gb|EEY12194.1| N utilization substance B [Mannheimia haemolytica serotype A2 str. BOVINE] Length = 137 Score = 62.8 bits (151), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 50/145 (34%), Positives = 72/145 (49%), Gaps = 14/145 (9%) Query: 10 LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF 69 +K+S RR AR AVQA+Y I + E+ F D ++ VD+ +F Sbjct: 1 MKISPRRR-ARECAVQAIYSWYISQNTVEEV-----ELAFVTDQDMK------GVDMPYF 48 Query: 70 RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISE 129 R + GV+D + ID + L K S +D I SILR EL H VP V+I+E Sbjct: 49 RKLFRGVVDNVEAIDEALRPYLDRKES--DVDPIERSILRLSTYELKFEHDVPFRVVINE 106 Query: 130 YVCIAHDFFYGDEPKFINAVLDKVS 154 + +A F D K+IN +LDK++ Sbjct: 107 GIEVAKVFGSDDSHKYINGILDKLA 131 >gi|56964231|ref|YP_175962.1| transcription antitermination protein NusB [Bacillus clausii KSM-K16] gi|81600830|sp|Q5WF59|NUSB_BACSK RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|56910474|dbj|BAD65001.1| N utilization substance protein NusB [Bacillus clausii KSM-K16] Length = 133 Score = 62.8 bits (151), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 40/136 (29%), Positives = 68/136 (50%), Gaps = 15/136 (11%) Query: 15 RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74 R +ARL AVQ LYQ+ +I + + I +T D E E++ ++H Sbjct: 2 NRRVARLRAVQTLYQLTLIDINVDKAIE---------NTLNDEEEPS-----EFYNTLVH 47 Query: 75 GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134 G ++ + ID +S L + ++ RL + +I R G+ E++ +PV V ++E + +A Sbjct: 48 GTLEHQDEIDGYLSENL-KGYTLDRLGHVDRAIARMGLFEMLYLDDIPVNVTLNEAIELA 106 Query: 135 HDFFYGDEPKFINAVL 150 F D +FIN VL Sbjct: 107 KAFGGTDAGRFINGVL 122 >gi|296140288|ref|YP_003647531.1| NusB antitermination factor [Tsukamurella paurometabola DSM 20162] gi|296028422|gb|ADG79192.1| NusB antitermination factor [Tsukamurella paurometabola DSM 20162] Length = 165 Score = 62.8 bits (151), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 46/154 (29%), Positives = 73/154 (47%), Gaps = 8/154 (5%) Query: 1 MTIQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESV 60 M Q K K S R AR AV L++++ G T++ R A + V V Sbjct: 1 MPDQSENKRPKKSGARHRARKRAVDLLFEVEARGV--TDVDGLLAERRTLAADDASVPPV 58 Query: 61 YLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHS 120 E+ ++ GV ++ +D +I+S LT W+ +RL + +ILR V EL Sbjct: 59 S-----EYTAQLVTGVDVDREQLDSVITSHLT-GWTLARLPAVDRAILRVAVWELFNAPD 112 Query: 121 VPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVS 154 VP V++ E V +A + + P ++N VL KV+ Sbjct: 113 VPPAVVVDEAVELAKELSTDESPSYLNGVLGKVA 146 >gi|323702771|ref|ZP_08114431.1| NusB antitermination factor [Desulfotomaculum nigrificans DSM 574] gi|323532288|gb|EGB22167.1| NusB antitermination factor [Desulfotomaculum nigrificans DSM 574] Length = 144 Score = 62.8 bits (151), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 41/135 (30%), Positives = 70/135 (51%), Gaps = 12/135 (8%) Query: 19 ARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMD 78 AR A+QAL+QID+ G E + F A ++ +LE+ R ++ G ++ Sbjct: 6 ARETALQALFQIDV-GKIEPEFALKNTAEEFGAGSQ----------ELEFARQLVTGTLE 54 Query: 79 RKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFF 138 ID +IS ++++W SR+ + +I+R + E++ +P V I+E V +A F Sbjct: 55 HINEIDEIISR-VSKEWQLSRMANVDRNIMRLALYEMMFRDDIPGSVSINEAVELAKAFG 113 Query: 139 YGDEPKFINAVLDKV 153 D KF+N +L KV Sbjct: 114 GADSGKFVNGILGKV 128 >gi|320536419|ref|ZP_08036456.1| transcription antitermination factor NusB [Treponema phagedenis F0421] gi|320146729|gb|EFW38308.1| transcription antitermination factor NusB [Treponema phagedenis F0421] Length = 136 Score = 62.8 bits (151), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 43/146 (29%), Positives = 73/146 (50%), Gaps = 12/146 (8%) Query: 10 LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF 69 +++ RRG R+ A QAL+ D G S+ E + ++E + E E +L Sbjct: 1 MQIGRRRG--RILAFQALFAWDF-GQSSPEELVQFEWFE---TKEPVSEEAFLFP----- 49 Query: 70 RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISE 129 +++ G ++ + ID I + L W F RL+ +I+R GV L+ P ++I E Sbjct: 50 KMLFLGTLEHLEEIDTHIKNNL-HNWDFDRLNKADKAIIRLGVYSLLFQKDTPSAIVIDE 108 Query: 130 YVCIAHDFFYGDEPKFINAVLDKVSR 155 V +A F D KF+NA+LD +++ Sbjct: 109 AVNLARSFGTDDSFKFVNAILDSIAK 134 >gi|23099336|ref|NP_692802.1| transcription antitermination protein NusB [Oceanobacillus iheyensis HTE831] gi|32171652|sp|Q8EQ42|NUSB_OCEIH RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|22777565|dbj|BAC13837.1| transcriptional terminator [Oceanobacillus iheyensis HTE831] Length = 126 Score = 62.8 bits (151), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 50/140 (35%), Positives = 74/140 (52%), Gaps = 20/140 (14%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 R AR A Q L+Q+DI + TE+ ET + E + V+L R ++ G Sbjct: 3 RHKAREKAFQVLFQLDI---NETELEEVMETLK-----EKERYDVFL-------RSLVEG 47 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135 V+ K ID IS+ L EKW+ R+ + +ILR +LE++ +P V I+E + +AH Sbjct: 48 VIQHKSVIDEKISTHL-EKWTIDRIASVERTILRMAILEIMYIDDIPQNVSINEAIELAH 106 Query: 136 DFFYGDEP--KFINAVLDKV 153 F GDE KF+N VL K+ Sbjct: 107 TF--GDEQSGKFVNGVLSKI 124 >gi|240170738|ref|ZP_04749397.1| transcription antitermination protein NusB [Mycobacterium kansasii ATCC 12478] Length = 174 Score = 62.4 bits (150), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 47/153 (30%), Positives = 71/153 (46%), Gaps = 12/153 (7%) Query: 1 MTIQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESV 60 M K +K H+ AR AV L++ + G S E++ E T A E+ Sbjct: 1 MPEGKPGKPVKGRHQ---ARKRAVDVLFEAEARGMSPLEVV-ESRTALAAAKPEV----A 52 Query: 61 YLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHS 120 LH + + GV + HID LI++ L + W+ RL + +ILR V EL+ Sbjct: 53 PLH---PYTAAVARGVSEDAAHIDDLIAAHL-QGWTLDRLPAVDRAILRVSVWELLHADD 108 Query: 121 VPVEVIISEYVCIAHDFFYGDEPKFINAVLDKV 153 VP V + E V +A + + P F+N VL +V Sbjct: 109 VPEPVAVDEAVELAKELSTDESPGFVNGVLGQV 141 >gi|269103251|ref|ZP_06155948.1| transcription termination protein NusB [Photobacterium damselae subsp. damselae CIP 102761] gi|268163149|gb|EEZ41645.1| transcription termination protein NusB [Photobacterium damselae subsp. damselae CIP 102761] Length = 152 Score = 62.4 bits (150), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 44/148 (29%), Positives = 73/148 (49%), Gaps = 6/148 (4%) Query: 10 LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYL---HVDL 66 +K + RR AR AVQA+Y I +I + + + E E+ L H D+ Sbjct: 1 MKPAARRN-ARQFAVQAIYSWQITQGDIADIEQHFLSGDKFEEEEYQAEAPVLAAPHTDV 59 Query: 67 EWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVI 126 +FR + GV+ Q +D + L+ LD + ++LR + E+++ VP +V+ Sbjct: 60 NYFRDLFTGVVLNHQDLDSKMRPYLSR--PLQDLDQMELALLRLAMYEMVKREDVPFKVV 117 Query: 127 ISEYVCIAHDFFYGDEPKFINAVLDKVS 154 I+E + +A F D KF+N VLDK + Sbjct: 118 INEAIELAKLFGAEDSHKFVNGVLDKAA 145 >gi|212709167|ref|ZP_03317295.1| hypothetical protein PROVALCAL_00200 [Providencia alcalifaciens DSM 30120] gi|212688079|gb|EEB47607.1| hypothetical protein PROVALCAL_00200 [Providencia alcalifaciens DSM 30120] Length = 138 Score = 62.4 bits (150), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 41/132 (31%), Positives = 65/132 (49%), Gaps = 13/132 (9%) Query: 23 AVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQH 82 AVQA+Y + G E+ Y F A+ ++ VD+ +FR +I G+ + Sbjct: 13 AVQAIYSWQLSGNPIAEV-----EYEFIAEQDMS------DVDVNYFRELISGIANNATK 61 Query: 83 IDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDE 142 +D L+S L+ + L + +ILR + EL VP +V I+E + +A F D Sbjct: 62 LDQLMSPYLSRQ--LEELGQVEKAILRVAMYELSYRQDVPFKVAINEGIELAKVFGAEDS 119 Query: 143 PKFINAVLDKVS 154 KF+N VLDK + Sbjct: 120 HKFVNGVLDKAA 131 >gi|114332465|ref|YP_748687.1| NusB antitermination factor [Nitrosomonas eutropha C91] gi|122312909|sp|Q0AD60|NUSB_NITEC RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|114309479|gb|ABI60722.1| NusB antitermination factor [Nitrosomonas eutropha C91] Length = 167 Score = 62.4 bits (150), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 38/141 (26%), Positives = 70/141 (49%), Gaps = 13/141 (9%) Query: 14 HRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVII 73 +RR ++R A+Q +YQ + G + EI D +L + Y D +F ++ Sbjct: 21 NRRRLSRELALQGIYQWRLAGGNAQEI-----------DLQLQQVNFYSKADGSYFSDLL 69 Query: 74 HGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCI 133 GV++ + ++ I + L + + L + CSIL G E++ +P II+E + + Sbjct: 70 QGVLEHSRDLEAQIQAYLDRQ--LAELSPVECSILLIGTYEMVHHPEIPCRAIINEAIEL 127 Query: 134 AHDFFYGDEPKFINAVLDKVS 154 A + D K++N VLDK++ Sbjct: 128 AKSYGGTDGHKYVNGVLDKLA 148 >gi|312877547|ref|ZP_07737507.1| NusB antitermination factor [Caldicellulosiruptor lactoaceticus 6A] gi|311795688|gb|EFR12057.1| NusB antitermination factor [Caldicellulosiruptor lactoaceticus 6A] Length = 134 Score = 62.4 bits (150), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 39/127 (30%), Positives = 65/127 (51%), Gaps = 7/127 (5%) Query: 36 STTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKW 95 +I+ Y+ +R EL+ + + +D ++ ++ GV+ +Q ID LI ++ W Sbjct: 12 GQQDIMEFYKKFR-----ELNQDEDFKDIDEKYLERLLKGVIQNQQRIDNLIEKY-SKDW 65 Query: 96 SFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSR 155 SRL M+ +LR V EL+ VPV V I E V +A F P F+N +L +++ Sbjct: 66 PLSRLPMVELELLRIAVYELLFEEDVPVSVAIDEAVDMASIFGIEKAPSFVNGILGRIA- 124 Query: 156 KEEIKRS 162 E+KR Sbjct: 125 ANEVKRG 131 >gi|148264233|ref|YP_001230939.1| NusB antitermination factor [Geobacter uraniireducens Rf4] gi|189035890|sp|A5G3J8|NUSB_GEOUR RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|146397733|gb|ABQ26366.1| NusB antitermination factor [Geobacter uraniireducens Rf4] Length = 145 Score = 62.4 bits (150), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 43/144 (29%), Positives = 70/144 (48%), Gaps = 7/144 (4%) Query: 12 LSHRRGIARLAAVQALYQIDIIGCSTTEIISE-YETYRFCADTELDVESVYLHVDLEWFR 70 +S RR R A+QALY D+ T ++ E + ++ +D S E Sbjct: 1 MSSRRE-GRELALQALYSSDVEVMDGTTVLKRIMENFGDGSEPAVDAHSRSFSFAAE--- 56 Query: 71 VIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEY 130 +++GV+ + ID I ++ WS SR+ + +ILR V EL +P V I+E Sbjct: 57 -LVNGVVANRAAIDQRIEEK-SKNWSISRMARVDLNILRLAVFELFYRPDIPKNVTINEA 114 Query: 131 VCIAHDFFYGDEPKFINAVLDKVS 154 + +A F D P FIN +LD+++ Sbjct: 115 IEVAKKFGADDSPAFINGILDEIA 138 >gi|330721632|gb|EGG99649.1| Transcription termination protein NusB [gamma proteobacterium IMCC2047] Length = 153 Score = 62.4 bits (150), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 51/153 (33%), Positives = 73/153 (47%), Gaps = 16/153 (10%) Query: 4 QDNKKDLKLSH--RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVY 61 Q K+ +LS RR RLA +QALYQ ++ S EI E F D + Sbjct: 6 QPKPKNKRLSPALRRNARRLA-MQALYQWELASSSLLEIERE-----FREDNNMQ----- 54 Query: 62 LHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSV 121 VD ++F ++H V K +D I L S L + +ILR EL++ V Sbjct: 55 -KVDADYFTELLHRVPTLKTELDEQIKPLLDR--DISELTPVELTILRLSGYELLKRPDV 111 Query: 122 PVEVIISEYVCIAHDFFYGDEPKFINAVLDKVS 154 P VII+E V +A F D K++N +LDK++ Sbjct: 112 PYRVIINEGVELAKTFGATDGHKYVNGILDKLA 144 >gi|330505151|ref|YP_004382020.1| transcription antitermination protein NusB [Pseudomonas mendocina NK-01] gi|328919437|gb|AEB60268.1| transcription antitermination protein NusB [Pseudomonas mendocina NK-01] Length = 159 Score = 62.4 bits (150), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 42/136 (30%), Positives = 66/136 (48%), Gaps = 13/136 (9%) Query: 19 ARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMD 78 AR A+QALY I G EI +++ V++ + VD +F I+HGV Sbjct: 24 ARTLAMQALYSWHIAGQPLNEIEAQFR-----------VDNDFSKVDGAYFHEILHGVPR 72 Query: 79 RKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFF 138 +K +D + L +D + +ILR EL VP +V+I+E + +A F Sbjct: 73 QKTELDGAFTPLLDR--PLEEIDPVELAILRLSTYELKNRVDVPYKVVINEGIELAKVFG 130 Query: 139 YGDEPKFINAVLDKVS 154 D KF+N +LDK++ Sbjct: 131 ATDGHKFVNGILDKLA 146 >gi|163941940|ref|YP_001646824.1| transcription antitermination protein NusB [Bacillus weihenstephanensis KBAB4] gi|229013400|ref|ZP_04170537.1| N utilization substance protein B [Bacillus mycoides DSM 2048] gi|229061872|ref|ZP_04199202.1| N utilization substance protein B [Bacillus cereus AH603] gi|229620056|sp|A9VGW4|NUSB_BACWK RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|163864137|gb|ABY45196.1| NusB antitermination factor [Bacillus weihenstephanensis KBAB4] gi|228717433|gb|EEL69101.1| N utilization substance protein B [Bacillus cereus AH603] gi|228747812|gb|EEL97678.1| N utilization substance protein B [Bacillus mycoides DSM 2048] Length = 130 Score = 62.4 bits (150), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 45/140 (32%), Positives = 66/140 (47%), Gaps = 14/140 (10%) Query: 15 RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74 +R AR A+QALYQ+DI G E E +T + E E+ ++ Sbjct: 2 KRRTARERAMQALYQMDITG--------ELEPKVAVENTLDEGEETN-----EFLESLVV 48 Query: 75 GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134 G +D K+ ID I L +KW R+ ++ SILR V E+ +P V I+E + IA Sbjct: 49 GFVDNKEEIDAAIRQNL-KKWKLERISIVDRSILRVAVCEMKYMEEIPHNVTINEAIEIA 107 Query: 135 HDFFYGDEPKFINAVLDKVS 154 F + +FIN VL + Sbjct: 108 KTFGDEESRRFINGVLSNIK 127 >gi|221310355|ref|ZP_03592202.1| transcription antitermination protein NusB [Bacillus subtilis subsp. subtilis str. 168] gi|221314679|ref|ZP_03596484.1| transcription antitermination protein NusB [Bacillus subtilis subsp. subtilis str. NCIB 3610] gi|221319602|ref|ZP_03600896.1| transcription antitermination protein NusB [Bacillus subtilis subsp. subtilis str. JH642] gi|221323878|ref|ZP_03605172.1| transcription antitermination protein NusB [Bacillus subtilis subsp. subtilis str. SMY] gi|255767541|ref|NP_390312.2| transcription antitermination protein NusB [Bacillus subtilis subsp. subtilis str. 168] gi|321311916|ref|YP_004204203.1| transcription antitermination protein NusB [Bacillus subtilis BSn5] gi|251757301|sp|P54520|NUSB_BACSU RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|225185169|emb|CAB14363.2| transcription termination factor NusB [Bacillus subtilis subsp. subtilis str. 168] gi|291484874|dbj|BAI85949.1| transcription antitermination protein NusB [Bacillus subtilis subsp. natto BEST195] gi|320018190|gb|ADV93176.1| transcription antitermination protein NusB [Bacillus subtilis BSn5] Length = 131 Score = 62.4 bits (150), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 43/148 (29%), Positives = 70/148 (47%), Gaps = 18/148 (12%) Query: 15 RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74 +R AR A+QAL+QID+ + E I LD E +F ++H Sbjct: 2 KRRTAREKALQALFQIDVSDIAVNEAIEHA----------LDEEKTD-----PFFEQLVH 46 Query: 75 GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134 GV++ + +D +IS L W R+ + +ILR E+ +PV V ++E + +A Sbjct: 47 GVLEHQDQLDEMISKHLV-NWKLDRIANVDRAILRLAAYEMAYAEDIPVNVSMNEAIELA 105 Query: 135 HDFFYGDEPKFINAVLDKVSRKEEIKRS 162 F KF+N VL + K +I++S Sbjct: 106 KRFGDDKATKFVNGVLSNI--KSDIEQS 131 >gi|118443864|ref|YP_878051.1| transcription antitermination protein NusB [Clostridium novyi NT] gi|166215685|sp|A0Q099|NUSB_CLONN RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|118134320|gb|ABK61364.1| transcription antitermination factor NusB [Clostridium novyi NT] Length = 133 Score = 62.4 bits (150), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 39/137 (28%), Positives = 71/137 (51%), Gaps = 11/137 (8%) Query: 14 HRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVII 73 +RR +R A++ L+++ I +EI+ F +T+ ++E +VD + I+ Sbjct: 2 NRRK-SREVAMKLLFEMSINKEEFSEILK-----NFKENTDTNME----NVDFIYINKIV 51 Query: 74 HGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCI 133 +G+ K+ ID I LT KW +RL I +ILR E++ +P +V ++E + + Sbjct: 52 NGIEQNKEDIDKKIEENLT-KWKLNRLSKIDLTILRISTYEIMFMEDIPNKVAVNEAIEL 110 Query: 134 AHDFFYGDEPKFINAVL 150 A + + P F+N VL Sbjct: 111 AKKYSADNSPAFVNGVL 127 >gi|302338941|ref|YP_003804147.1| NusB antitermination factor [Spirochaeta smaragdinae DSM 11293] gi|301636126|gb|ADK81553.1| NusB antitermination factor [Spirochaeta smaragdinae DSM 11293] Length = 140 Score = 62.0 bits (149), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 45/143 (31%), Positives = 69/143 (48%), Gaps = 8/143 (5%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 R AR+ A QA+Y + E++ +++ +LD E+ R+++ G Sbjct: 4 RRKARILAFQAIYSWEFHKPLLAELL-QFDWLEEERKAKLDTETWLFA------RLLVQG 56 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135 ++ ID I + L E W FSRL + +ILR EL+ VP V I E V +A Sbjct: 57 TIENCDTIDHRIQNRL-EHWDFSRLSKVDLAILRLSTYELLFQQDVPASVAIDEAVDLAK 115 Query: 136 DFFYGDEPKFINAVLDKVSRKEE 158 DF D +FIN VLD + ++ E Sbjct: 116 DFGGDDSYRFINGVLDSIRKERE 138 >gi|154248795|ref|YP_001409620.1| transcription antitermination protein NusB [Fervidobacterium nodosum Rt17-B1] gi|171769316|sp|A7HJ80|NUSB_FERNB RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|154152731|gb|ABS59963.1| NusB antitermination factor [Fervidobacterium nodosum Rt17-B1] Length = 141 Score = 62.0 bits (149), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 41/142 (28%), Positives = 69/142 (48%), Gaps = 13/142 (9%) Query: 15 RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74 +R + R V+ +Q + EI SE T D + + F+ + Sbjct: 4 KRRVLREMVVKLFFQREFRHNEFEEIFSE--TLNKIRDNTIKAD----------FKRYVE 51 Query: 75 GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134 GV ID +IS+ L WSF RL + ++LR G ELI ++P+EV I+E + IA Sbjct: 52 GVFHNLSTIDNIISNHLI-NWSFDRLSYLERNVLRVGTYELIYEENIPIEVTINEMIEIA 110 Query: 135 HDFFYGDEPKFINAVLDKVSRK 156 + + KF+N +LD+++++ Sbjct: 111 KKYGSEESGKFVNGILDRIAKE 132 >gi|304440279|ref|ZP_07400169.1| transcription antitermination factor NusB [Peptoniphilus duerdenii ATCC BAA-1640] gi|304371328|gb|EFM24944.1| transcription antitermination factor NusB [Peptoniphilus duerdenii ATCC BAA-1640] Length = 135 Score = 62.0 bits (149), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 47/141 (33%), Positives = 72/141 (51%), Gaps = 13/141 (9%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 R +AR ++ LYQ+DI + E + Y +++L + V E+ R I G Sbjct: 3 RRVARRGLMKLLYQMDINEDYSDEALDFY-----FENSDLKEDEV------EFIREHISG 51 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135 ++D+ + ID +I S L E WS R+ I ILR V EL S ++I+E V IA Sbjct: 52 MIDKFEEIDEIIKSNL-EGWSLERISNIDRQILRIAVYELY-FTSTASNIVINEAVEIAR 109 Query: 136 DFFYGDEPKFINAVLDKVSRK 156 ++ + PKFIN +L + RK Sbjct: 110 EYSSNEAPKFINGILGTIFRK 130 >gi|88607519|ref|YP_505131.1| N utilization substance protein B [Anaplasma phagocytophilum HZ] gi|88598582|gb|ABD44052.1| N utilization substance protein B [Anaplasma phagocytophilum HZ] Length = 282 Score = 62.0 bits (149), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 46/136 (33%), Positives = 72/136 (52%), Gaps = 8/136 (5%) Query: 19 ARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLH-VDLEWFRVIIHGVM 77 AR AVQ Y + + G T + + + C E+ + LH VD + I+ ++ Sbjct: 22 ARFLAVQGAYAM-MFGAYTASDLEDLLEH-LCEMQEV----LDLHRVDKKLLSKILGCMI 75 Query: 78 DRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDF 137 ++ +D LIS L EKWS R++++ +++RAGV EL+ C VII+EYV IA Sbjct: 76 EKCNEVDSLISVHLNEKWSMERINLVSLAVMRAGVCELL-CLKTSECVIINEYVGIASTV 134 Query: 138 FYGDEPKFINAVLDKV 153 E F+NA+L+K Sbjct: 135 LEKSEVNFVNAILNKA 150 >gi|330814127|ref|YP_004358366.1| antitermination protein NusB [Candidatus Pelagibacter sp. IMCC9063] gi|327487222|gb|AEA81627.1| antitermination protein NusB [Candidatus Pelagibacter sp. IMCC9063] Length = 125 Score = 62.0 bits (149), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 36/144 (25%), Positives = 70/144 (48%), Gaps = 20/144 (13%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 +G +RL +Q +Y+ I S+ EI +Y + + + +G Sbjct: 2 KGSSRLIVIQKIYEK--ISDSSHEIKFPKSSY------------------IRTVKKVFNG 41 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135 +++ +D ++S L+ SF LDMIL IL+A + E++ +P +V++ EY+ + Sbjct: 42 FFEKEADLDQILSKNLSSNISFKNLDMILKIILKAAIFEVLYMPKIPFKVVVDEYLAVTE 101 Query: 136 DFFYGDEPKFINAVLDKVSRKEEI 159 ++ + +NAVLD V + E + Sbjct: 102 MYYDSSQKGLVNAVLDSVFKSEHV 125 >gi|302872150|ref|YP_003840786.1| NusB antitermination factor [Caldicellulosiruptor obsidiansis OB47] gi|302575009|gb|ADL42800.1| NusB antitermination factor [Caldicellulosiruptor obsidiansis OB47] Length = 136 Score = 62.0 bits (149), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 40/126 (31%), Positives = 67/126 (53%), Gaps = 7/126 (5%) Query: 37 TTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWS 96 +II Y+ +R EL+ + VD ++ ++ GV+ +Q ID LI+ ++ W Sbjct: 13 QQDIIEFYKRFR-----ELNQNEDFKDVDEKYLEKLLKGVIQNQQIIDNLIAKY-SKDWP 66 Query: 97 FSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRK 156 +RL M+ ++R V EL+ VPV V I E V +A F P F+N +L +++ + Sbjct: 67 LNRLPMVELELMRIAVYELLFEEDVPVSVAIDEAVDMASIFGIEKAPSFVNGILGRIA-E 125 Query: 157 EEIKRS 162 E+KRS Sbjct: 126 NEVKRS 131 >gi|126666701|ref|ZP_01737678.1| transcription antitermination protein NusB [Marinobacter sp. ELB17] gi|126628746|gb|EAZ99366.1| transcription antitermination protein NusB [Marinobacter sp. ELB17] Length = 166 Score = 62.0 bits (149), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 42/138 (30%), Positives = 69/138 (50%), Gaps = 13/138 (9%) Query: 19 ARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMD 78 AR A+Q LYQ + + I +E F D ++ VDL +FR ++HG Sbjct: 33 ARGMAMQGLYQRHFSKSAISNIEAE-----FMVDNDMS------KVDLLYFRDLLHGTSR 81 Query: 79 RKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFF 138 + +D LI L +D + +I+R G EL VP +V+I+E + +A F Sbjct: 82 EQAELDRLIEPFLDR--PLQEVDPVELAIVRLGAYELKFRLDVPYKVVINEGIEMAKRFG 139 Query: 139 YGDEPKFINAVLDKVSRK 156 + +F+N++LDK+SR+ Sbjct: 140 GTEGHRFVNSILDKLSRR 157 >gi|302036739|ref|YP_003797061.1| transcription antitermination factor NusB [Candidatus Nitrospira defluvii] gi|190343154|gb|ACE75542.1| transcription antitermination protein [Candidatus Nitrospira defluvii] gi|300604803|emb|CBK41135.1| Transcription antitermination factor NusB [Candidatus Nitrospira defluvii] Length = 157 Score = 62.0 bits (149), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 41/135 (30%), Positives = 65/135 (48%), Gaps = 13/135 (9%) Query: 19 ARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMD 78 AR AVQ L+Q DI G + + + Y + + E ++ GV Sbjct: 7 ARERAVQILFQYDIHGQAGPWLDDFWIQYPLAEELRVFAER------------LVAGVRA 54 Query: 79 RKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFF 138 K+ +D LI + T W SR+ +I +ILR G EL+ VP +V ++E + +A F Sbjct: 55 NKKELDALIGTYAT-NWKVSRMPIIDRNILRMGCFELLHVPEVPAKVTLNEAIELAKSFG 113 Query: 139 YGDEPKFINAVLDKV 153 + KF+N +LDK+ Sbjct: 114 DEEASKFVNGILDKL 128 >gi|308048552|ref|YP_003912118.1| NusB antitermination factor [Ferrimonas balearica DSM 9799] gi|307630742|gb|ADN75044.1| NusB antitermination factor [Ferrimonas balearica DSM 9799] Length = 136 Score = 62.0 bits (149), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 45/145 (31%), Positives = 73/145 (50%), Gaps = 14/145 (9%) Query: 10 LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF 69 +K S RR RLA VQA+Y + G + +I E+ T E D + DL +F Sbjct: 1 MKPSERRKARRLA-VQAIYSWQMSGNAVADIEHEFLT-------EQDTKGA----DLGYF 48 Query: 70 RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISE 129 R ++ GV+ + ++D + L +D + +ILR EL+ VP +V+I+E Sbjct: 49 RELLVGVVSQSSNLDARLKPNLAR--LVEEVDQLELAILRLAAFELLHRDDVPYKVVINE 106 Query: 130 YVCIAHDFFYGDEPKFINAVLDKVS 154 + +A F + KF+N VLDK++ Sbjct: 107 AIELAKAFGAEESHKFVNGVLDKLA 131 >gi|145224333|ref|YP_001135011.1| transcription antitermination protein NusB [Mycobacterium gilvum PYR-GCK] gi|315444665|ref|YP_004077544.1| NusB antitermination factor [Mycobacterium sp. Spyr1] gi|189035893|sp|A4TBX3|NUSB_MYCGI RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|145216819|gb|ABP46223.1| NusB antitermination factor [Mycobacterium gilvum PYR-GCK] gi|315262968|gb|ADT99709.1| NusB antitermination factor [Mycobacterium sp. Spyr1] Length = 164 Score = 62.0 bits (149), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 46/146 (31%), Positives = 66/146 (45%), Gaps = 8/146 (5%) Query: 8 KDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLE 67 D K R AR AV L++ + G + E+ E AD D + L+ Sbjct: 2 PDRKGDRGRHQARKRAVDLLFEAEARGITAAEV---AEARNALADNGAD-DIAPLN---P 54 Query: 68 WFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVII 127 + + GV D HID LIS+ L + W+ RL + ++LR V EL+ VP V + Sbjct: 55 YTVTVARGVTDHAAHIDDLISAHL-QGWTLDRLPAVDRAVLRVAVWELLHAVDVPEPVAV 113 Query: 128 SEYVCIAHDFFYGDEPKFINAVLDKV 153 E V +A D P F+N VL +V Sbjct: 114 DEAVELAKQLSTDDSPGFVNGVLGQV 139 >gi|91203372|emb|CAJ71025.1| unknown protein [Candidatus Kuenenia stuttgartiensis] Length = 422 Score = 61.6 bits (148), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 45/138 (32%), Positives = 70/138 (50%), Gaps = 12/138 (8%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 R IAR A++ALYQ+D++G +E E FC + +Y ++ +++ G Sbjct: 4 RTIARELAIKALYQLDLLGDK-----AETEIDEFCRQNA-EKPDIY-----KFALLLVTG 52 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135 + ID IS E W R+ +I +ILR GV EL+ +P +V I+E + +A Sbjct: 53 CRSHVKEIDERISLS-AENWDLHRMAVIDKNILRLGVYELLYRDDIPPKVSINEAIELAK 111 Query: 136 DFFYGDEPKFINAVLDKV 153 F D F+N +LDKV Sbjct: 112 KFGDKDSGMFVNGILDKV 129 >gi|152976586|ref|YP_001376103.1| transcription antitermination protein NusB [Bacillus cereus subsp. cytotoxis NVH 391-98] gi|189035878|sp|A7GSK0|NUSB_BACCN RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|152025338|gb|ABS23108.1| NusB antitermination factor [Bacillus cytotoxicus NVH 391-98] Length = 130 Score = 61.6 bits (148), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 47/142 (33%), Positives = 69/142 (48%), Gaps = 18/142 (12%) Query: 15 RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74 +R AR A+QALYQ+DI G ++ E T +T E+ ++ Sbjct: 2 KRRTARERAMQALYQMDITGELNPKVAVE-NTLDEGEETN------------EFLDSLVG 48 Query: 75 GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134 G ++ K+ ID LI L +KW R+ ++ SILR V E+ +P V I+E + IA Sbjct: 49 GFVEHKETIDELIRQNL-KKWKLERISIVDRSILRLAVYEMKYMEEIPHNVTINEAIEIA 107 Query: 135 HDFFYGDEP--KFINAVLDKVS 154 F GDE +FIN VL + Sbjct: 108 KTF--GDEESRRFINGVLSNIK 127 >gi|118617385|ref|YP_905717.1| transcription antitermination protein NusB [Mycobacterium ulcerans Agy99] gi|118569495|gb|ABL04246.1| N utilization substance protein NusB [Mycobacterium ulcerans Agy99] Length = 173 Score = 61.6 bits (148), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 45/146 (30%), Positives = 72/146 (49%), Gaps = 12/146 (8%) Query: 8 KDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLE 67 K +K H+ AR AV +++ + G EI ++ T A+T+ DV ++ Sbjct: 8 KPVKGRHQ---ARKRAVDLMFEAEARGLGPGEI-ADLRTE--LAETKPDVAPLH-----P 56 Query: 68 WFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVII 127 + + G+ + HID LI+S L + W+ RL + +ILR V EL+ VP V + Sbjct: 57 YTAAVARGIGEHAAHIDDLITSHL-QGWTLDRLPAVDRAILRVAVWELLYADDVPEPVAV 115 Query: 128 SEYVCIAHDFFYGDEPKFINAVLDKV 153 E V +A + D P F+N VL +V Sbjct: 116 DEAVELAKELSTDDSPSFVNGVLGQV 141 >gi|319651493|ref|ZP_08005621.1| transcription antitermination protein NusB [Bacillus sp. 2_A_57_CT2] gi|317396808|gb|EFV77518.1| transcription antitermination protein NusB [Bacillus sp. 2_A_57_CT2] Length = 129 Score = 61.6 bits (148), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 50/146 (34%), Positives = 70/146 (47%), Gaps = 23/146 (15%) Query: 15 RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYL-HVDLEWFRVII 73 +R AR A+QAL+QID+ A+ E +E V E+ ++ Sbjct: 2 KRRTAREKALQALFQIDV----------------SQAEPETAIEHVLEGEKSDEYLNKLV 45 Query: 74 HGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIE-CHSVPVEVIISEYVC 132 GV+ K+ ID I L EKW+ RL + ++LR V EL+ VP V++ E + Sbjct: 46 SGVLQHKETIDGEIKGFL-EKWTLERLATVDRNLLRLSVYELLYLAEEVPANVVLDEAIE 104 Query: 133 IAHDFFYGDE--PKFINAVLDKVSRK 156 IA YGD+ KFIN VL KV K Sbjct: 105 IAK--LYGDDQSSKFINGVLSKVKEK 128 >gi|71279330|ref|YP_268274.1| transcription termination/antitermination factor NusB [Colwellia psychrerythraea 34H] gi|119390761|sp|Q485J1|NUSB_COLP3 RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|71145070|gb|AAZ25543.1| transcription termination/antitermination factor NusB [Colwellia psychrerythraea 34H] Length = 138 Score = 61.6 bits (148), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 46/143 (32%), Positives = 66/143 (46%), Gaps = 14/143 (9%) Query: 10 LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF 69 +K S RR AR AVQA+Y + +I F AD D+E+F Sbjct: 1 MKPSPRRK-ARELAVQAVYSWQVSKNPVNDI-----EVNFIADNS------KRRFDIEYF 48 Query: 70 RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISE 129 ++++ GV ID I + +D + +ILR V EL +C VP V+I+E Sbjct: 49 QLLLRGVTTNIGSIDEAIIPYVDR--PLDDIDQVEKAILRVAVFELKDCTDVPYRVVINE 106 Query: 130 YVCIAHDFFYGDEPKFINAVLDK 152 + +A F D KF+N VLDK Sbjct: 107 AIELAKSFAADDSHKFVNGVLDK 129 >gi|54025601|ref|YP_119843.1| transcription antitermination protein NusB [Nocardia farcinica IFM 10152] gi|81602600|sp|Q5YTL2|NUSB_NOCFA RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|54017109|dbj|BAD58479.1| putative transcription termination factor [Nocardia farcinica IFM 10152] Length = 169 Score = 61.6 bits (148), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 47/150 (31%), Positives = 69/150 (46%), Gaps = 11/150 (7%) Query: 5 DNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVY-LH 63 D K K R AR AV L++ + ++++E AD +SV LH Sbjct: 7 DKKSTFKKLGARHKARRRAVDLLFEAEARDVDAADLLTER------ADLATRDQSVAPLH 60 Query: 64 VDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPV 123 + R ++ GV D + +D I S L + W+ SRL + +ILR V EL VP Sbjct: 61 A---YTRTLVEGVADELERVDGTIESYL-QDWTLSRLPAVDRAILRVAVWELFHATDVPP 116 Query: 124 EVIISEYVCIAHDFFYGDEPKFINAVLDKV 153 V + E V +A + D P F+N VL +V Sbjct: 117 VVAVDEAVELAKELSTDDSPSFVNGVLGQV 146 >gi|312793191|ref|YP_004026114.1| nusb antitermination factor [Caldicellulosiruptor kristjanssonii 177R1B] gi|312180331|gb|ADQ40501.1| NusB antitermination factor [Caldicellulosiruptor kristjanssonii 177R1B] Length = 134 Score = 61.6 bits (148), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 38/127 (29%), Positives = 65/127 (51%), Gaps = 7/127 (5%) Query: 36 STTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKW 95 +I+ Y+ +R EL+ + + +D ++ ++ GV+ +Q ID LI ++ W Sbjct: 12 GQQDIMEFYKKFR-----ELNQDEDFKDIDEKYLERLLKGVIQNQQRIDNLIEKY-SKDW 65 Query: 96 SFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSR 155 SRL M+ ++R V EL+ VPV V I E V +A F P F+N +L +++ Sbjct: 66 PLSRLPMVELELMRIAVYELLFEEDVPVSVAIDEAVDMASIFGIEKAPSFVNGILGRIA- 124 Query: 156 KEEIKRS 162 E+KR Sbjct: 125 ANEVKRG 131 >gi|327439755|dbj|BAK16120.1| transcription termination factor [Solibacillus silvestris StLB046] Length = 128 Score = 61.6 bits (148), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 46/150 (30%), Positives = 70/150 (46%), Gaps = 31/150 (20%) Query: 15 RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLE------W 68 +R AR A+QAL+Q+D TEL +E HV E + Sbjct: 2 KRTEARQKALQALFQLD--------------------STELTIEEAIGHVLEEEQKSNAF 41 Query: 69 FRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIIS 128 ++ G + + ID + L EKW+ +RL I +ILR V EL+ P +VI++ Sbjct: 42 LEQLVRGTTENIEAIDAALEKNL-EKWTINRLPKIERTILRLAVYELLYAEETPNKVIMN 100 Query: 129 EYVCIAHDFFYGDEP--KFINAVLDKVSRK 156 E + ++ F GDE KF+N VL K + + Sbjct: 101 EAIELSKTF--GDEKSSKFVNGVLSKFTEQ 128 >gi|205374079|ref|ZP_03226879.1| transcription antitermination protein NusB [Bacillus coahuilensis m4-4] Length = 129 Score = 61.6 bits (148), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 50/147 (34%), Positives = 70/147 (47%), Gaps = 32/147 (21%) Query: 15 RRGIARLAAVQALYQIDIIGCSTTEII------SEYETY--RFCADTELDVESVYLHVDL 66 +R AR A+QAL+Q+D+ S E + SE + Y + TE ++E Sbjct: 2 KRHTAREKALQALFQMDMSQLSGQEALTNVTEESEMDDYLSKLVLQTETNLE-------- 53 Query: 67 EWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVI 126 V+D+K +L EKWSF RL + SILR V E++ VP +V Sbjct: 54 ---------VIDQKIRENL-------EKWSFERLAKVDRSILRLTVCEMMFIEDVPNKVA 97 Query: 127 ISEYVCIAHDFFYGDEPKFINAVLDKV 153 I+E + +A F KFINAVL KV Sbjct: 98 INEAIELAKTFGDDQSSKFINAVLSKV 124 >gi|157692931|ref|YP_001487393.1| transcription antitermination protein NusB [Bacillus pumilus SAFR-032] gi|166918803|sp|A8FF16|NUSB_BACP2 RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|157681689|gb|ABV62833.1| transcription antitermination protein NusB [Bacillus pumilus SAFR-032] Length = 131 Score = 61.6 bits (148), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 44/154 (28%), Positives = 74/154 (48%), Gaps = 30/154 (19%) Query: 15 RRGIARLAAVQALYQIDIIGCSTTEIIS----EYETYRFCADTELDVESVYLHVDLEWFR 70 +R AR A+Q L+QID+ E I+ E E+ F F Sbjct: 2 KRRTAREKALQTLFQIDVSNIDPKEAITHALDEQESDPF-------------------FE 42 Query: 71 VIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEY 130 ++ GV+++K +D +IS L W R+ + +ILR V E++ +PV V ++E Sbjct: 43 ELVFGVLEQKDKLDDMISQHLV-NWKLDRIANVDRAILRLSVYEMVYQEDIPVSVSMNEA 101 Query: 131 VCIAHDFFYGDE--PKFINAVLDKVSRKEEIKRS 162 + +A +GD+ PKF+N VL + K ++K+ Sbjct: 102 IELAK--LFGDDKAPKFVNGVLSNI--KNDLKQQ 131 >gi|294635301|ref|ZP_06713799.1| transcription antitermination factor NusB [Edwardsiella tarda ATCC 23685] gi|291091310|gb|EFE23871.1| transcription antitermination factor NusB [Edwardsiella tarda ATCC 23685] Length = 139 Score = 61.6 bits (148), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 44/139 (31%), Positives = 70/139 (50%), Gaps = 13/139 (9%) Query: 23 AVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQH 82 AVQALY I ++ Y+F +E DV+ V D+ +FR ++ GV + Sbjct: 13 AVQALYSWQISKNDIADV-----EYQFL--SEQDVKDV----DVNYFRELLSGVASNADY 61 Query: 83 IDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDE 142 +D L++ L+ + L + +ILR + EL + VP +V I+E V +A F D Sbjct: 62 LDGLMAPVLSRQ--LDELGQVEKAILRVSIYELSKRQDVPYKVAINEGVELAKTFGAEDS 119 Query: 143 PKFINAVLDKVSRKEEIKR 161 KF+N VLDK++ + R Sbjct: 120 HKFVNGVLDKIAPQVRPNR 138 >gi|78485740|ref|YP_391665.1| NusB antitermination factor [Thiomicrospira crunogena XCL-2] gi|119390843|sp|Q31FT2|NUSB_THICR RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|78364026|gb|ABB41991.1| NusB antitermination factor [Thiomicrospira crunogena XCL-2] Length = 161 Score = 61.6 bits (148), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 42/139 (30%), Positives = 67/139 (48%), Gaps = 13/139 (9%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 R R A+QALYQ + T +II ++ DT D+ F+ I++ Sbjct: 24 RTQTRRVALQALYQWQVNHSETVDIIKQFSEEGRLVDT-----------DVALFQEIVNE 72 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135 V + +D L + L + +R+D + +I+R GV EL +P V+I+E V +A Sbjct: 73 VANHAADLDELYAPFLDR--AVARIDPVEKNIMRMGVFELQNKLEIPYRVVINESVELAK 130 Query: 136 DFFYGDEPKFINAVLDKVS 154 F D K+IN +LDK + Sbjct: 131 RFGAEDSHKYINGILDKAA 149 >gi|254448007|ref|ZP_05061471.1| transcription antitermination factor NusB [gamma proteobacterium HTCC5015] gi|198262433|gb|EDY86714.1| transcription antitermination factor NusB [gamma proteobacterium HTCC5015] Length = 188 Score = 61.6 bits (148), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 46/151 (30%), Positives = 73/151 (48%), Gaps = 10/151 (6%) Query: 7 KKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVE--SVYLHV 64 +K L + R R +QALYQ +++++ ++ D E+ E + V Sbjct: 39 RKKLSRTEARRKTRQRILQALYQCYFNPLPSSKLVQQF------YDDEVGEEEGNDMFGV 92 Query: 65 DLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVE 124 D ++F+ + +D+ + +D L C K RLD + ILR V EL E VP Sbjct: 93 DADFFQAALSTCVDKTEQLDELY--CAHLKMPIDRLDPVELCILRLAVFELSERLDVPRR 150 Query: 125 VIISEYVCIAHDFFYGDEPKFINAVLDKVSR 155 V+I+E V +A + D KFIN V+DK +R Sbjct: 151 VVINEAVELAKSYGAEDGHKFINGVIDKTAR 181 >gi|225021344|ref|ZP_03710536.1| hypothetical protein CORMATOL_01363 [Corynebacterium matruchotii ATCC 33806] gi|224945726|gb|EEG26935.1| hypothetical protein CORMATOL_01363 [Corynebacterium matruchotii ATCC 33806] Length = 277 Score = 61.6 bits (148), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 33/82 (40%), Positives = 45/82 (54%) Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131 II GV + ID +I+ L E W SR+ + +ILR V E+I VPV+ +SE V Sbjct: 40 IIAGVAEELNRIDDVIAEYLAENWELSRISAVDRAILRVAVWEMIFNPDVPVKTALSEAV 99 Query: 132 CIAHDFFYGDEPKFINAVLDKV 153 +A + P +INAVLD V Sbjct: 100 ELASQYSGASAPAYINAVLDSV 121 >gi|1303915|dbj|BAA12571.1| YqhZ [Bacillus subtilis] Length = 131 Score = 61.6 bits (148), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 40/139 (28%), Positives = 64/139 (46%), Gaps = 16/139 (11%) Query: 15 RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74 +R AR A+QAL+QID+ + E I LD E +F ++H Sbjct: 2 KRRTAREKALQALFQIDVSDIAVNEAIEHA----------LDEEKTD-----PFFEQLVH 46 Query: 75 GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134 GV++ + +D +IS L W R+ + +ILR E+ +PV V ++E + +A Sbjct: 47 GVLEHQDQLDEMISKHLV-NWKLDRIANVDRAILRLAAYEMAYAEDIPVNVSMNEAIELA 105 Query: 135 HDFFYGDEPKFINAVLDKV 153 F KF+N VL + Sbjct: 106 KRFGDDKATKFVNGVLSNI 124 >gi|307299170|ref|ZP_07578971.1| NusB antitermination factor [Thermotogales bacterium mesG1.Ag.4.2] gi|306914966|gb|EFN45352.1| NusB antitermination factor [Thermotogales bacterium mesG1.Ag.4.2] Length = 148 Score = 61.6 bits (148), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 36/120 (30%), Positives = 61/120 (50%), Gaps = 11/120 (9%) Query: 47 YRFCADTELDVESVYLHVDLEWF----------RVIIHGVMDRKQHIDLLISSCLTEKWS 96 Y+F + +++ S YL +L +F R ++ + ID +I LT W+ Sbjct: 21 YQFDFNEDMESSSDYLEQELSFFSMEMEMKLRTRKYFDTILKNRNEIDEIIRKHLT-NWT 79 Query: 97 FSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRK 156 F RL ++LR G E+I +P+EV ++E + IA + KF+N VLDK++R+ Sbjct: 80 FERLASTDKNVLRLGAYEIIYEPDIPIEVTLNESIDIAKKYGSEQGGKFVNGVLDKIARE 139 >gi|323359977|ref|YP_004226373.1| transcription termination factor [Microbacterium testaceum StLB037] gi|323276348|dbj|BAJ76493.1| transcription termination factor [Microbacterium testaceum StLB037] Length = 136 Score = 61.2 bits (147), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 43/140 (30%), Positives = 72/140 (51%), Gaps = 9/140 (6%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 R AR A+ L+Q D+ G I+ E R A +E D ++ +L+ R I+ G Sbjct: 4 RTKARKRALDILFQADVRG-EELPIMLAAEAKR--AASEPDRQASWLYA-----RDIVDG 55 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135 V+D + ID I++ ++ WS R+ + ++LR G E++ VP V I E V +A Sbjct: 56 VIDNRDAIDEQITT-FSKDWSLQRMPAVDRALLRIGTWEILYNDEVPTAVAIDEAVELAK 114 Query: 136 DFFYGDEPKFINAVLDKVSR 155 +F D F++ VL +++R Sbjct: 115 EFSTDDSGSFVHGVLARIAR 134 >gi|269138332|ref|YP_003295032.1| transcription termination factor [Edwardsiella tarda EIB202] gi|267983992|gb|ACY83821.1| transcription termination factor [Edwardsiella tarda EIB202] gi|304558364|gb|ADM41028.1| Transcription termination protein NusB [Edwardsiella tarda FL6-60] Length = 139 Score = 61.2 bits (147), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 43/132 (32%), Positives = 68/132 (51%), Gaps = 13/132 (9%) Query: 23 AVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQH 82 AVQALY I ++ Y+F +E DV+ V D+ +FR ++ GV + Sbjct: 13 AVQALYSWQISKNDIADV-----EYQFL--SEQDVKDV----DVNYFRELLSGVASNADY 61 Query: 83 IDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDE 142 +D L++ L+ + L + +ILR + EL + VP +V I+E + +A F D Sbjct: 62 LDGLMAPVLSRQ--LEELGQVERAILRVSIYELSKRQDVPYKVAINEGIELAKTFGAEDS 119 Query: 143 PKFINAVLDKVS 154 KF+N VLDKV+ Sbjct: 120 HKFVNGVLDKVA 131 >gi|261346385|ref|ZP_05974029.1| transcription antitermination factor NusB [Providencia rustigianii DSM 4541] gi|282565703|gb|EFB71238.1| transcription antitermination factor NusB [Providencia rustigianii DSM 4541] Length = 138 Score = 61.2 bits (147), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 41/132 (31%), Positives = 64/132 (48%), Gaps = 13/132 (9%) Query: 23 AVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQH 82 AVQA+Y + G E+ Y F A+ ++ VD+ +FR +I G+ Sbjct: 13 AVQAIYSWQLSGNPIAEV-----EYEFLAEQDMS------DVDVNYFRELISGIASNATK 61 Query: 83 IDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDE 142 +D L+S L+ + L + +ILR + EL VP +V I+E + +A F D Sbjct: 62 LDQLMSPYLSRQ--LEELGQVEKAILRVSMYELSYRQDVPFKVAINEGIELAKVFGAEDS 119 Query: 143 PKFINAVLDKVS 154 KF+N VLDK + Sbjct: 120 HKFVNGVLDKAA 131 >gi|304407046|ref|ZP_07388700.1| NusB antitermination factor [Paenibacillus curdlanolyticus YK9] gi|304344033|gb|EFM09873.1| NusB antitermination factor [Paenibacillus curdlanolyticus YK9] Length = 156 Score = 61.2 bits (147), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 40/139 (28%), Positives = 66/139 (47%), Gaps = 1/139 (0%) Query: 15 RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74 +R +AR AVQ+LYQ+++ + E + D E+ + R ++ Sbjct: 2 KRRLAREIAVQSLYQMEMNEVTAEEAVDMLMEEARQQDNEIGAHPAEAAKVNAFTRGLVF 61 Query: 75 GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134 GV++RK ID ++ LT W RL + ILR E++ VP + I+E + +A Sbjct: 62 GVIERKTAIDQMLQQYLT-GWQVDRLSRVDRQILRLAAYEILFRDDVPPKAAINEAIELA 120 Query: 135 HDFFYGDEPKFINAVLDKV 153 F + KF+N VL K+ Sbjct: 121 KHFGTDESGKFVNGVLGKL 139 >gi|157364365|ref|YP_001471132.1| transcription antitermination protein NusB [Thermotoga lettingae TMO] gi|254772664|sp|A8F7D4|NUSB_THELT RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|157314969|gb|ABV34068.1| NusB antitermination factor [Thermotoga lettingae TMO] Length = 140 Score = 61.2 bits (147), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 34/83 (40%), Positives = 47/83 (56%), Gaps = 1/83 (1%) Query: 73 IHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVC 132 + G+ + ID IS CL E WS RL ++ SILR EL+ VP+EV + E V Sbjct: 49 VKGIYENLPSIDEKISLCL-ENWSLQRLSLVDRSILRLATYELLYESDVPIEVTLDEAVE 107 Query: 133 IAHDFFYGDEPKFINAVLDKVSR 155 IA + + KF+N VLDKV++ Sbjct: 108 IAKKYGTENSSKFVNGVLDKVAK 130 >gi|305681487|ref|ZP_07404294.1| transcription antitermination factor NusB [Corynebacterium matruchotii ATCC 14266] gi|305659692|gb|EFM49192.1| transcription antitermination factor NusB [Corynebacterium matruchotii ATCC 14266] Length = 312 Score = 61.2 bits (147), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 33/82 (40%), Positives = 45/82 (54%) Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131 II GV + ID +I+ L E W SR+ + +ILR V E+I VPV+ +SE V Sbjct: 75 IIAGVAEELNRIDDVIAEYLAENWELSRISAVDRAILRVAVWEMIFNPDVPVKTALSEAV 134 Query: 132 CIAHDFFYGDEPKFINAVLDKV 153 +A + P +INAVLD V Sbjct: 135 ELASQYSGASAPAYINAVLDSV 156 >gi|120553778|ref|YP_958129.1| NusB antitermination factor [Marinobacter aquaeolei VT8] gi|166215695|sp|A1TYX3|NUSB_MARAV RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|120323627|gb|ABM17942.1| NusB antitermination factor [Marinobacter aquaeolei VT8] Length = 158 Score = 61.2 bits (147), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 44/155 (28%), Positives = 74/155 (47%), Gaps = 13/155 (8%) Query: 2 TIQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVY 61 + Q K + R AR A+Q LYQ ++I +E F D ++ Sbjct: 8 SPQPGKTGQPKAGDRRRARALAMQGLYQRHFSKTPISDIEAE-----FMVDNDMS----- 57 Query: 62 LHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSV 121 VD+ +FR ++ GV + +D L+ L +D + +I+R G EL V Sbjct: 58 -KVDIMYFRDLLRGVHREQAELDKLLEPFLDR--PLKEVDPVELAIVRLGAYELKHRIDV 114 Query: 122 PVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRK 156 P +V+I+E + +A F + KF+N++LDK+SR+ Sbjct: 115 PYKVVINEGIEMAKRFGGTEGHKFVNSILDKLSRR 149 >gi|325474207|gb|EGC77395.1| N utilization substance protein B [Treponema denticola F0402] Length = 136 Score = 61.2 bits (147), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 41/147 (27%), Positives = 70/147 (47%), Gaps = 12/147 (8%) Query: 10 LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF 69 + + RRG R+ A QAL D+ G ++ + + + + + + YL Sbjct: 1 MSVGRRRG--RILAFQALVAWDVGGA----VLDDLLNFSWQNENSIKDPNSYLFP----- 49 Query: 70 RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISE 129 ++++ G ++ ID +I L + W RL+ + +ILR V LI P ++I E Sbjct: 50 KMMVLGTIENITEIDKVIQENL-DNWVIDRLNSVDKAILRLSVYSLIYQKDTPPPIVIDE 108 Query: 130 YVCIAHDFFYGDEPKFINAVLDKVSRK 156 + +A DF D KF+NAVLD + K Sbjct: 109 AINLAKDFGTDDSYKFVNAVLDSIKNK 135 >gi|269216070|ref|ZP_06159924.1| transcription antitermination factor NusB [Slackia exigua ATCC 700122] gi|269130329|gb|EEZ61407.1| transcription antitermination factor NusB [Slackia exigua ATCC 700122] Length = 218 Score = 61.2 bits (147), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 44/146 (30%), Positives = 72/146 (49%), Gaps = 14/146 (9%) Query: 19 ARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMD 78 R +A LYQ +IIG I+ E + E L+ E+ R+++ G Sbjct: 12 GRRSAASVLYQSEIIGKPVDRILEEGDI----------PEEAGLN---EYGRLLLLGFSA 58 Query: 79 RKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFF 138 + ID +IS + W+ +R+ M+ +LR V E+ +VP+ V I+E V IA +F Sbjct: 59 HRAEIDRIISE-RSANWAVNRMPMVDRELLRITVYEMKYVDAVPIPVSINEAVEIAKEFG 117 Query: 139 YGDEPKFINAVLDKVSRKEEIKRSGC 164 D +FIN +L +V+R + + SG Sbjct: 118 GDDSYRFINGLLGRVARDLDEQASGS 143 >gi|295698399|ref|YP_003603054.1| transcription antitermination factor NusB [Candidatus Riesia pediculicola USDA] gi|291157256|gb|ADD79701.1| transcription antitermination factor NusB [Candidatus Riesia pediculicola USDA] Length = 140 Score = 61.2 bits (147), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 46/146 (31%), Positives = 74/146 (50%), Gaps = 14/146 (9%) Query: 19 ARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMD 78 AR+ AVQALY I G + I+ ++ ++S + VD+E+F+ I G + Sbjct: 8 ARIMAVQALYSWQISGTKNSLIVVDFLNM---------IQSKKIDVDIEYFKKIFIGTSN 58 Query: 79 RKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFF 138 + ID + + + +D I +ILR GV EL+ +P +VII+E + ++ F Sbjct: 59 KVSKIDQKLFRHTSR--ALKLIDQIEKAILRLGVFELLYIK-IPYKVIINEAIELSKKFG 115 Query: 139 YGDEPKFINAVLDKVSRKEEIKRSGC 164 KF+N VLDK+ K+ K SG Sbjct: 116 SERSYKFVNGVLDKIVFKK--KESGS 139 >gi|311069033|ref|YP_003973956.1| transcription antitermination protein NusB [Bacillus atrophaeus 1942] gi|310869550|gb|ADP33025.1| transcription antitermination protein NusB [Bacillus atrophaeus 1942] Length = 131 Score = 61.2 bits (147), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 42/148 (28%), Positives = 72/148 (48%), Gaps = 18/148 (12%) Query: 15 RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74 +R AR A+QAL+QID+ + E I D + D +F +++ Sbjct: 2 KRRTAREKALQALFQIDVSDIAPNEAIEHA-----LDDQKTD----------PFFEELVY 46 Query: 75 GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134 GV+D + +D +IS L W R+ + ++LR V E++ +PV V ++E + +A Sbjct: 47 GVIDHQVQLDEMISKHLV-NWKLDRIANVDRAVLRLAVYEMVYVEDIPVNVSMNEAIELA 105 Query: 135 HDFFYGDEPKFINAVLDKVSRKEEIKRS 162 F KF+N VL + K +I++S Sbjct: 106 KRFGDDKATKFVNGVLSNI--KSDIEQS 131 >gi|149378278|ref|ZP_01895989.1| NusB [Marinobacter algicola DG893] gi|149357443|gb|EDM45954.1| NusB [Marinobacter algicola DG893] Length = 158 Score = 61.2 bits (147), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 45/141 (31%), Positives = 69/141 (48%), Gaps = 13/141 (9%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 R AR A+Q LYQ S T+I SE F D ++ VD +FR ++ G Sbjct: 22 RRRARALAMQGLYQRHFSKSSITDIESE-----FIVDNDMS------KVDAAYFRDLLRG 70 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135 V + +D L+ L +D I +I+R G EL VP +V+I+E + +A Sbjct: 71 VHREQAELDRLLEPFLDR--PIHEVDAIELAIVRLGAYELKHRLDVPYKVVINEGIEMAK 128 Query: 136 DFFYGDEPKFINAVLDKVSRK 156 F + KF+N++LDK+S + Sbjct: 129 RFGGTEGHKFVNSLLDKLSHR 149 >gi|238918991|ref|YP_002932505.1| transcription antitermination factor NusB, [Edwardsiella ictaluri 93-146] gi|259514829|sp|C5BCH6|NUSB_EDWI9 RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|238868559|gb|ACR68270.1| transcription antitermination factor NusB, putative [Edwardsiella ictaluri 93-146] Length = 139 Score = 60.8 bits (146), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 43/132 (32%), Positives = 69/132 (52%), Gaps = 13/132 (9%) Query: 23 AVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQH 82 AVQALY I ++ Y+F +E DV+ V D+ +FR ++ GV ++ Sbjct: 13 AVQALYSWQISKNDIADV-----EYQFL--SEQDVKDV----DVNYFRELLSGVASNAEY 61 Query: 83 IDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDE 142 +D L++ L+ + L + +ILR + EL + VP +V I+E + +A F D Sbjct: 62 LDGLMAPVLSRQ--LDELGQVERAILRVSIYELSKRQDVPYKVAINEGIELAKIFGAEDS 119 Query: 143 PKFINAVLDKVS 154 KF+N VLDKV+ Sbjct: 120 HKFVNGVLDKVA 131 >gi|115377906|ref|ZP_01465091.1| transcription antitermination factor NusB [Stigmatella aurantiaca DW4/3-1] gi|310822844|ref|YP_003955202.1| n utilization substance protein b [Stigmatella aurantiaca DW4/3-1] gi|115365066|gb|EAU64116.1| transcription antitermination factor NusB [Stigmatella aurantiaca DW4/3-1] gi|309395916|gb|ADO73375.1| N utilization substance protein B [Stigmatella aurantiaca DW4/3-1] Length = 141 Score = 60.8 bits (146), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 38/139 (27%), Positives = 65/139 (46%), Gaps = 7/139 (5%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 R R A+QALYQ+++ ++ + + D E+V +L + G Sbjct: 4 RRTGRERALQALYQLEMTPSTSVHEALASAWAASSEEGKPDPEAVRFAQEL------VEG 57 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135 V R+ +D LI + W R+ I ++LR GV EL +P +V I+E V + Sbjct: 58 VQTRRAEVDQLIEKH-SHNWRLDRMSRIDRNVLRLGVFELKYRPDIPKKVSINEAVELGK 116 Query: 136 DFFYGDEPKFINAVLDKVS 154 +F + F+N +LD+V+ Sbjct: 117 NFGTEESSAFVNGLLDRVA 135 >gi|254821798|ref|ZP_05226799.1| transcription antitermination protein NusB [Mycobacterium intracellulare ATCC 13950] Length = 169 Score = 60.8 bits (146), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 43/135 (31%), Positives = 63/135 (46%), Gaps = 9/135 (6%) Query: 19 ARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMD 78 AR AV L++ + G S E++ + T A+ E+ Y + GV + Sbjct: 11 ARKRAVDLLFEAEARGLSPAEVV-DVRTGLAEANPEIAPLQPYT-------AAVARGVGE 62 Query: 79 RKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFF 138 H+D LISS L + W+ RL + +ILR V EL+ VP V + E V +A + Sbjct: 63 HAAHVDDLISSHL-QGWTLDRLPAVDRAILRVAVWELLYADDVPEPVAVDEAVQLAKELS 121 Query: 139 YGDEPKFINAVLDKV 153 D P F+N VL V Sbjct: 122 TDDSPGFVNGVLGHV 136 >gi|296333411|ref|ZP_06875864.1| transcription antitermination protein NusB [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305675083|ref|YP_003866755.1| transcription antitermination protein NusB [Bacillus subtilis subsp. spizizenii str. W23] gi|296149609|gb|EFG90505.1| transcription antitermination protein NusB [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305413327|gb|ADM38446.1| transcription antitermination protein NusB [Bacillus subtilis subsp. spizizenii str. W23] Length = 131 Score = 60.8 bits (146), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 43/148 (29%), Positives = 70/148 (47%), Gaps = 18/148 (12%) Query: 15 RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74 +R AR A+QAL+QID+ + E I LD E +F ++H Sbjct: 2 KRRTAREKALQALFQIDVSDIAVNEAIEHA----------LDEEKTD-----PFFEQLVH 46 Query: 75 GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134 GV++ + +D +IS L W R+ + +ILR E+ +PV V ++E + +A Sbjct: 47 GVLEHQVQLDEMISKHLV-NWKLDRIANVDRAILRLAAYEMAYAEDIPVNVSMNEAIELA 105 Query: 135 HDFFYGDEPKFINAVLDKVSRKEEIKRS 162 F KF+N VL + K +I++S Sbjct: 106 KRFGDDKATKFVNGVLSNI--KSDIEQS 131 >gi|298529745|ref|ZP_07017148.1| NusB antitermination factor [Desulfonatronospira thiodismutans ASO3-1] gi|298511181|gb|EFI35084.1| NusB antitermination factor [Desulfonatronospira thiodismutans ASO3-1] Length = 157 Score = 60.8 bits (146), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 40/150 (26%), Positives = 72/150 (48%), Gaps = 9/150 (6%) Query: 6 NKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVD 65 +K K +H R R A Q LY + + T I+ + ++ DT + D Sbjct: 4 HKPRTKTTHSRHAQREFAFQVLYSLHF-DQTGTHILDTFHHFKNDQDTAV-------QQD 55 Query: 66 LEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEV 125 + + +I+GV + + +D I ++ W R+ M+ +I+R V E+I +PV+V Sbjct: 56 MSYALQLINGVRENLEELDAAIGRH-SQNWKVKRIAMVELTIMRLAVYEMIYREDIPVKV 114 Query: 126 IISEYVCIAHDFFYGDEPKFINAVLDKVSR 155 I+E + +A F + F+N +LD V+R Sbjct: 115 GINEAIELAKTFGDNNSRNFVNGILDAVAR 144 >gi|127512123|ref|YP_001093320.1| transcription antitermination protein NusB [Shewanella loihica PV-4] gi|166215717|sp|A3QC63|NUSB_SHELP RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|126637418|gb|ABO23061.1| NusB antitermination factor [Shewanella loihica PV-4] Length = 134 Score = 60.8 bits (146), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 46/148 (31%), Positives = 73/148 (49%), Gaps = 14/148 (9%) Query: 10 LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF 69 +K S RR RLA VQA+Y + G + ++ E+E F + ++D VD+ +F Sbjct: 1 MKPSERRKARRLA-VQAIYSWQLSGNNVADV--EHE---FLTEQKID------GVDVSYF 48 Query: 70 RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISE 129 R ++ G + +D LI L F + I ++LR EL VP +V I+E Sbjct: 49 RELLSGTTTKSAQLDELIMPHLER--PFDEVSPIEKAVLRIATYELTFRKDVPYKVAINE 106 Query: 130 YVCIAHDFFYGDEPKFINAVLDKVSRKE 157 + +A F D KF+N +LDK+ K+ Sbjct: 107 AIELAKAFGAEDGHKFVNGILDKIVAKK 134 >gi|212638784|ref|YP_002315304.1| transcription antitermination protein NusB [Anoxybacillus flavithermus WK1] gi|212560264|gb|ACJ33319.1| Transcription termination factor [Anoxybacillus flavithermus WK1] Length = 152 Score = 60.8 bits (146), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 48/155 (30%), Positives = 75/155 (48%), Gaps = 27/155 (17%) Query: 5 DNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIIS---EYETYRFCADTELDVESVY 61 DN + L +R AR A+QAL+QID+ G E ++ E ET F Sbjct: 16 DNMIERVLVMKRHTAREKALQALFQIDVGGIEPHEAVANVIEEETDPFM----------- 64 Query: 62 LHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSV 121 +++ GV++ ++ ID L+ L EKW+ R+ + SILR V E+ + Sbjct: 65 --------EMLVFGVVEHQKEIDDLLRQHL-EKWTLERVANVDRSILRMAVFEMKYMDDI 115 Query: 122 PVEVIISEYVCIAHDFFYGDEP--KFINAVLDKVS 154 P+ V + E + +A +GDE +FIN VL K+ Sbjct: 116 PLSVSMDEAIELAK--VFGDEKSSRFINGVLAKIK 148 >gi|295106070|emb|CBL03613.1| transcription antitermination factor NusB [Gordonibacter pamelaeae 7-10-1-b] Length = 160 Score = 60.8 bits (146), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 45/144 (31%), Positives = 71/144 (49%), Gaps = 16/144 (11%) Query: 14 HRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCA-DTELDVESVYLHVDLEWFRVI 72 H R AR +A+ LY +I T+I E R+ A D L + L +E RV Sbjct: 6 HERTRARRSALALLYTSEITDEGATKIAEEG---RYLAEDGPLPDYATALVRGVEAHRVA 62 Query: 73 IHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVC 132 I +H+ + +E W+ +R+ ++ SILR E++ VP V I+E V Sbjct: 63 ID------KHL-----AATSENWALARMPIVDRSILRLATYEMMYVDDVPTSVTINEAVE 111 Query: 133 IAHDFFYGDE-PKFINAVLDKVSR 155 +A DF DE P+F+N VL ++++ Sbjct: 112 LAKDFGGEDESPRFVNGVLGRIAK 135 >gi|300784648|ref|YP_003764939.1| transcription antiterminator NusB [Amycolatopsis mediterranei U32] gi|299794162|gb|ADJ44537.1| transcription antiterminator NusB [Amycolatopsis mediterranei U32] Length = 151 Score = 60.8 bits (146), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 28/83 (33%), Positives = 45/83 (54%), Gaps = 1/83 (1%) Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131 ++ GV RK ID L++ + W+ R+ + ++LR GV EL+ VP V I E V Sbjct: 60 LVEGVTGRKTQIDELLAEH-AQGWTLERMPKVDLAVLRVGVYELLWAEDVPDPVAIDEAV 118 Query: 132 CIAHDFFYGDEPKFINAVLDKVS 154 +A + D P+F+N VL ++ Sbjct: 119 GLAKELSTDDSPRFVNGVLGRIG 141 >gi|302533374|ref|ZP_07285716.1| transcription antitermination factor NusB [Streptomyces sp. C] gi|302442269|gb|EFL14085.1| transcription antitermination factor NusB [Streptomyces sp. C] Length = 143 Score = 60.8 bits (146), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 41/147 (27%), Positives = 70/147 (47%), Gaps = 12/147 (8%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 R AR A Q L++ D G E+++++ + D + V + + ++ G Sbjct: 4 RSNARKRAFQILFEADQRGVPVREVLADWIRHSRSDDRQPPVNAFTMD--------LVEG 55 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135 D+ + ID LI + + W R+ ++ +ILR G ELI P V I E V +A Sbjct: 56 YADKVKRIDDLIVTYAVD-WELDRMPVVDRNILRLGAYELIWVDETPDAVAIDEAVQLAK 114 Query: 136 DFFYGDEPKFINAVLDKVSRKEEIKRS 162 +F D P F+N +L +R +++K S Sbjct: 115 EFSTDDSPAFVNGLL---ARFKDLKPS 138 >gi|325833527|ref|ZP_08165976.1| transcription antitermination factor NusB [Eggerthella sp. HGA1] gi|325485451|gb|EGC87920.1| transcription antitermination factor NusB [Eggerthella sp. HGA1] Length = 200 Score = 60.8 bits (146), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 43/143 (30%), Positives = 71/143 (49%), Gaps = 14/143 (9%) Query: 14 HRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVII 73 H R AR AA+Q LY T+EI E D L+ + E+ +++ Sbjct: 6 HERTSARRAALQVLY--------TSEITDESPAAIAEGDRRLEEDGPLP----EYALMLV 53 Query: 74 HGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCI 133 GV + ID +++ +E WS +R+ ++ SILR E++ VP V I+E V + Sbjct: 54 RGVESHRIAIDNHLAAT-SENWSLARMPIVDRSILRLATFEMMYIDDVPTSVTINEAVEL 112 Query: 134 AHDFFYGDEP-KFINAVLDKVSR 155 A DF DE +F+N +L ++++ Sbjct: 113 AKDFGGEDESHRFVNGILGRIAK 135 >gi|229543899|ref|ZP_04432958.1| NusB antitermination factor [Bacillus coagulans 36D1] gi|229325038|gb|EEN90714.1| NusB antitermination factor [Bacillus coagulans 36D1] Length = 132 Score = 60.8 bits (146), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 44/139 (31%), Positives = 66/139 (47%), Gaps = 16/139 (11%) Query: 15 RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74 +R AR A+QAL+Q+D+ S + I R D + ES ++ +++ Sbjct: 3 KRRTAREKALQALFQMDMNEASPEDAI------RNALDGQ---ESD------DYLEKLVN 47 Query: 75 GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134 G ID +IS L E W+ RL + +ILR EL+ VP V I+E + IA Sbjct: 48 GTATHLAEIDAMISQHL-ENWTLDRLAKVELNILRLAAYELMYAEDVPANVAINEALEIA 106 Query: 135 HDFFYGDEPKFINAVLDKV 153 F KFIN VL+++ Sbjct: 107 KRFADEKSAKFINGVLNQM 125 >gi|39996792|ref|NP_952743.1| N utilization substance protein B [Geobacter sulfurreducens PCA] gi|81702305|sp|Q74CI1|NUSB_GEOSL RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|39983680|gb|AAR35070.1| N utilization substance protein B [Geobacter sulfurreducens PCA] gi|298505803|gb|ADI84526.1| transcription termination factor NusB [Geobacter sulfurreducens KN400] Length = 138 Score = 60.8 bits (146), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 28/83 (33%), Positives = 48/83 (57%), Gaps = 1/83 (1%) Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131 ++ GV++ +Q ID I+ ++ WS R+ + SILR + EL+ +P V I+E + Sbjct: 50 LVRGVLEHRQEIDTAITGA-SKNWSIGRMARVDLSILRMAMYELLFRSDIPKNVTINEAI 108 Query: 132 CIAHDFFYGDEPKFINAVLDKVS 154 +A F D P FIN +LD+++ Sbjct: 109 EVAKKFGTEDSPAFINGILDEIA 131 >gi|222055768|ref|YP_002538130.1| NusB antitermination factor [Geobacter sp. FRC-32] gi|254772641|sp|B9M1E7|NUSB_GEOSF RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|221565057|gb|ACM21029.1| NusB antitermination factor [Geobacter sp. FRC-32] Length = 145 Score = 60.8 bits (146), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 42/144 (29%), Positives = 69/144 (47%), Gaps = 7/144 (4%) Query: 12 LSHRRGIARLAAVQALYQIDIIGCSTTEIISE-YETYRFCADTELDVESVYLHVDLEWFR 70 +S RR R A+QALY D T + + + + ++ LDV E Sbjct: 1 MSSRRE-GRELALQALYSSDAESLGGTFALKKIMDNFADGSEPSLDVHGRSFTFATE--- 56 Query: 71 VIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEY 130 +++GV+ + ID I ++ WS +R+ + +ILR V EL +P V I+E Sbjct: 57 -LVNGVLSNSEAIDRKIEEK-SKNWSIARMAKVDLNILRLAVFELFYRPDIPKNVTINEA 114 Query: 131 VCIAHDFFYGDEPKFINAVLDKVS 154 + +A F D P FIN +LD+++ Sbjct: 115 IEVAKKFGAEDSPAFINGILDEIA 138 >gi|317490198|ref|ZP_07948686.1| transcription antitermination factor NusB [Eggerthella sp. 1_3_56FAA] gi|316910692|gb|EFV32313.1| transcription antitermination factor NusB [Eggerthella sp. 1_3_56FAA] Length = 200 Score = 60.8 bits (146), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 43/143 (30%), Positives = 71/143 (49%), Gaps = 14/143 (9%) Query: 14 HRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVII 73 H R AR AA+Q LY T+EI E D L+ + E+ +++ Sbjct: 6 HERTSARRAALQVLY--------TSEITDESPAAIAEGDRRLEEDGPLP----EYALMLV 53 Query: 74 HGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCI 133 GV + ID +++ +E WS +R+ ++ SILR E++ VP V I+E V + Sbjct: 54 RGVESHRIAIDNHLAAT-SENWSLARMPIVDRSILRLATFEMMYIDDVPTSVTINEAVEL 112 Query: 134 AHDFFYGDEP-KFINAVLDKVSR 155 A DF DE +F+N +L ++++ Sbjct: 113 AKDFGGEDESHRFVNGILGRIAK 135 >gi|315125804|ref|YP_004067807.1| transcription termination factor [Pseudoalteromonas sp. SM9913] gi|315014318|gb|ADT67656.1| transcription termination factor [Pseudoalteromonas sp. SM9913] Length = 137 Score = 60.8 bits (146), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 44/147 (29%), Positives = 74/147 (50%), Gaps = 14/147 (9%) Query: 10 LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF 69 +K + RR AR+ A+QA+Y + G + +I + ++ +E+ +D+E+F Sbjct: 1 MKPAARRK-ARILALQAVYSWQLSGNAIADI-----------EQQMLIENDVTKIDVEYF 48 Query: 70 RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISE 129 + + GV + +D +S LT F LD + +ILR EL VP +V I+E Sbjct: 49 KDLARGVAVNHKQLDEAVSPHLTR--PFDELDEVERAILRLSSYELKFREDVPYKVAINE 106 Query: 130 YVCIAHDFFYGDEPKFINAVLDKVSRK 156 + +A F D KF+N VLDK ++ Sbjct: 107 SIELAKMFGAEDSHKFVNGVLDKAVKQ 133 >gi|89073134|ref|ZP_01159673.1| transcription antitermination protein NusB [Photobacterium sp. SKA34] gi|89051087|gb|EAR56544.1| transcription antitermination protein NusB [Photobacterium sp. SKA34] Length = 156 Score = 60.8 bits (146), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 46/155 (29%), Positives = 78/155 (50%), Gaps = 9/155 (5%) Query: 10 LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYL---HVDL 66 +K + RR AR AVQA+Y + + +I + + + E ++ L H D+ Sbjct: 5 VKPAARRN-ARQFAVQAIYSWQLTKGNVADIEQHFLSGDKFEEEEHQADAPVLAAPHTDV 63 Query: 67 EWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVI 126 +FR + GV+ Q +D + L+ LD + ++LR + E+++ VP +V+ Sbjct: 64 SYFRDLFTGVVLSHQELDSKMRPYLSR--PLQDLDQMELALLRLAMYEMVKREDVPFKVV 121 Query: 127 ISEYVCIAHDFFYGDEPKFINAVLDKVS---RKEE 158 I+E + +A F D KFIN VLDK + RKE+ Sbjct: 122 INEAIELAKLFGAEDSHKFINGVLDKAAPTLRKEK 156 >gi|86159160|ref|YP_465945.1| NusB antitermination factor [Anaeromyxobacter dehalogenans 2CP-C] gi|197123232|ref|YP_002135183.1| NusB antitermination factor [Anaeromyxobacter sp. K] gi|220918021|ref|YP_002493325.1| NusB antitermination factor [Anaeromyxobacter dehalogenans 2CP-1] gi|119372275|sp|Q2ILH8|NUSB_ANADE RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|238689890|sp|B4UIM1|NUSB_ANASK RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|254772609|sp|B8JEW3|NUSB_ANAD2 RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|85775671|gb|ABC82508.1| NusB antitermination factor [Anaeromyxobacter dehalogenans 2CP-C] gi|196173081|gb|ACG74054.1| NusB antitermination factor [Anaeromyxobacter sp. K] gi|219955875|gb|ACL66259.1| NusB antitermination factor [Anaeromyxobacter dehalogenans 2CP-1] Length = 142 Score = 60.5 bits (145), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 42/152 (27%), Positives = 73/152 (48%), Gaps = 12/152 (7%) Query: 12 LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71 ++ RR AR A+QALYQID+ + +S + ++ E +V ++ Sbjct: 1 MTSRRTRARERALQALYQIDVAAEGIDDALSRF--WKSFEPVEREV--------MDLAEG 50 Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131 ++ GV ++ +D I + T W R+ + ++LR V EL+ VPV+V+I+E + Sbjct: 51 LVRGVAQHRRAVDEAIEAVST-NWRLDRMAKVDRNVLRLAVFELLRTD-VPVKVVINEAI 108 Query: 132 CIAHDFFYGDEPKFINAVLDKVSRKEEIKRSG 163 + + F+N VLDKV+ R G Sbjct: 109 ELGKKYGSESSGAFVNGVLDKVASGLPPARRG 140 >gi|311030979|ref|ZP_07709069.1| transcription antitermination protein NusB [Bacillus sp. m3-13] Length = 133 Score = 60.5 bits (145), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 41/139 (29%), Positives = 66/139 (47%), Gaps = 15/139 (10%) Query: 15 RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74 +R +R A+QA++Q+D+ + E I+ D ++ I+ Sbjct: 2 KRSESRKKALQAIFQMDLSDIAPDEAITNVLEEGERPD--------------DFLSSIVF 47 Query: 75 GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134 G + ++ ID + S L EKWS RL + +ILR V E++ +PV V ++E + +A Sbjct: 48 GTKEHQEEIDSTLKSHL-EKWSLDRLGTVDRTILRMTVFEMMFVEEIPVNVSMNEAIELA 106 Query: 135 HDFFYGDEPKFINAVLDKV 153 F FINAVL KV Sbjct: 107 KTFGDDKSSGFINAVLSKV 125 >gi|260893142|ref|YP_003239239.1| NusB antitermination factor [Ammonifex degensii KC4] gi|260865283|gb|ACX52389.1| NusB antitermination factor [Ammonifex degensii KC4] Length = 155 Score = 60.5 bits (145), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 38/143 (26%), Positives = 72/143 (50%), Gaps = 14/143 (9%) Query: 12 LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71 +S RR AR AA+ L+Q+D+ G E + R A+ L + E+ Sbjct: 1 MSRRR--AREAALMVLFQVDVGGAVPEEALE-----RTLAEWRLG------NASREFATS 47 Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131 ++ G + + ID +I L+++W R++ + +++R + EL+ +P V I+E V Sbjct: 48 LVLGTLAYRPQIDRVIEE-LSQRWRLERMNRVDRNVMRLALYELLFRQDIPPAVAINEAV 106 Query: 132 CIAHDFFYGDEPKFINAVLDKVS 154 +A + + P+F+N +L KV+ Sbjct: 107 ELAKRYGGEESPRFVNGILGKVA 129 >gi|326201953|ref|ZP_08191823.1| NusB antitermination factor [Clostridium papyrosolvens DSM 2782] gi|325987748|gb|EGD48574.1| NusB antitermination factor [Clostridium papyrosolvens DSM 2782] Length = 145 Score = 60.5 bits (145), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 43/142 (30%), Positives = 72/142 (50%), Gaps = 12/142 (8%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 R +R +A++ LYQ++I E I + L+ ES+ + D E+ + I+ G Sbjct: 3 RRASRESAMKLLYQLEIQKTDRDEQI----------NMALEDESLTEN-DREYIKGIVDG 51 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135 V D+ +D +I T W +RL I SILR G+ E++ +P V ++E V +A Sbjct: 52 VFDKTPVLDGIIEKKAT-GWKINRLSKIDLSILRIGIYEILYRDDIPFSVSVNEAVELAK 110 Query: 136 DFFYGDEPKFINAVLDKVSRKE 157 + D F+N +L KVS+ + Sbjct: 111 KYSNEDAGAFVNGLLAKVSKSD 132 >gi|119774157|ref|YP_926897.1| transcription antitermination protein NusB [Shewanella amazonensis SB2B] gi|166215714|sp|A1S4C1|NUSB_SHEAM RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|119766657|gb|ABL99227.1| NusB antitermination factor [Shewanella amazonensis SB2B] Length = 134 Score = 60.5 bits (145), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 43/144 (29%), Positives = 68/144 (47%), Gaps = 14/144 (9%) Query: 10 LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF 69 +K S RR RLA VQA+Y + G + ++ + F + ELD VD+ +F Sbjct: 1 MKPSERRKARRLA-VQAIYSWQLSGNNVADV-----EHEFLTEQELD------GVDVAYF 48 Query: 70 RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISE 129 R + G + +D + L + + +ILR V EL VP +V+I+E Sbjct: 49 RELFAGAATKTAQLDEKLKPLLDR--PLEEVSPVEKAILRLAVYELTFRKDVPYKVVINE 106 Query: 130 YVCIAHDFFYGDEPKFINAVLDKV 153 + +A F D KF+N +LDK+ Sbjct: 107 AIELAKSFGAEDGHKFVNGILDKL 130 >gi|183982195|ref|YP_001850486.1| N utilization substance protein NusB [Mycobacterium marinum M] gi|183175521|gb|ACC40631.1| N utilization substance protein NusB [Mycobacterium marinum M] Length = 173 Score = 60.5 bits (145), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 45/146 (30%), Positives = 71/146 (48%), Gaps = 12/146 (8%) Query: 8 KDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLE 67 K +K H+ AR AV +++ + G EI ++ T A+T+ DV ++ Sbjct: 8 KPVKGRHQ---ARKRAVDLMFEAEARGLGPGEI-ADLRTE--LAETKPDVAPLH-----P 56 Query: 68 WFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVII 127 + + G+ HID LI+S L + W+ RL + +ILR V EL+ VP V + Sbjct: 57 YTAAVARGIDQHAAHIDDLITSHL-QGWTLDRLPAVDRAILRVAVWELLYADDVPEPVAV 115 Query: 128 SEYVCIAHDFFYGDEPKFINAVLDKV 153 E V +A + D P F+N VL +V Sbjct: 116 DEAVELAKELSTDDSPSFVNGVLGQV 141 >gi|325290021|ref|YP_004266202.1| NusB antitermination factor [Syntrophobotulus glycolicus DSM 8271] gi|324965422|gb|ADY56201.1| NusB antitermination factor [Syntrophobotulus glycolicus DSM 8271] Length = 146 Score = 60.5 bits (145), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 39/143 (27%), Positives = 71/143 (49%), Gaps = 10/143 (6%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 R +AR A++ LYQID+ G ISE + E ++ + + + +I G Sbjct: 3 RRLARETALKVLYQIDMTGE-----ISEMDKNIEYWAGEFNLPEKHQ----PFTKQLIEG 53 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135 + +K+ ID +I E W+ R+ ++ +++R E++ + P V ++E + +A Sbjct: 54 TLSKKEEIDHMIGQNAHE-WALDRMSVVDRNLMRLASYEMLYLRNTPQRVSLNEAIELAK 112 Query: 136 DFFYGDEPKFINAVLDKVSRKEE 158 F D KFIN +LD + +EE Sbjct: 113 KFGGDDSAKFINGILDNLMTQEE 135 >gi|317492962|ref|ZP_07951386.1| transcription antitermination factor NusB [Enterobacteriaceae bacterium 9_2_54FAA] gi|316919084|gb|EFV40419.1| transcription antitermination factor NusB [Enterobacteriaceae bacterium 9_2_54FAA] Length = 139 Score = 60.5 bits (145), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 42/132 (31%), Positives = 69/132 (52%), Gaps = 13/132 (9%) Query: 23 AVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQH 82 AVQALY I ++ Y+F +E DV+ V D+ +FR ++ GV ++ Sbjct: 13 AVQALYSWQISKNDIADV-----EYQFL--SEQDVKDV----DISYFRELLSGVATNAEY 61 Query: 83 IDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDE 142 +D L++ L+ + L + ++LR + EL + VP +V I+E + +A F D Sbjct: 62 LDGLMAPVLSRQ--LEELGQVERAVLRISLFELSKREDVPYKVAINEGIELAKTFGAEDS 119 Query: 143 PKFINAVLDKVS 154 KF+N VLDKV+ Sbjct: 120 HKFVNGVLDKVA 131 >gi|226942829|ref|YP_002797902.1| transcription antitermination protein NusB [Azotobacter vinelandii DJ] gi|226717756|gb|ACO76927.1| transcription antitermination factor NusB [Azotobacter vinelandii DJ] Length = 131 Score = 60.5 bits (145), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 41/133 (30%), Positives = 65/133 (48%), Gaps = 13/133 (9%) Query: 24 VQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHI 83 +QALYQ + G EI +++ V++ + VD +F I+HGV +K I Sbjct: 1 MQALYQWHVAGQPLNEIEAQFR-----------VDNDFSTVDGAYFHEILHGVPRQKTEI 49 Query: 84 DLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEP 143 D + L + +D + +ILR EL VP V+I+E + +A F D Sbjct: 50 DEAFAPLLDR--PLAEVDPVELAILRLSTYELSNRLDVPYRVVINEGIELAKVFGATDGH 107 Query: 144 KFINAVLDKVSRK 156 KF+N VLDK++ + Sbjct: 108 KFVNGVLDKLAPR 120 >gi|82701147|ref|YP_410713.1| NusB antitermination factor [Nitrosospira multiformis ATCC 25196] gi|119390789|sp|Q2YD50|NUSB_NITMU RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|82409212|gb|ABB73321.1| NusB antitermination factor [Nitrosospira multiformis ATCC 25196] Length = 158 Score = 60.5 bits (145), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 44/142 (30%), Positives = 68/142 (47%), Gaps = 13/142 (9%) Query: 15 RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74 RR +AR A+Q LYQ + G S I ++ DTE + D E+F ++H Sbjct: 20 RRRLARELALQGLYQWCVAGGSAGTIEAQLR------DTE-----EFPKTDEEYFSRLLH 68 Query: 75 GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134 GV+ + ++ I CL F+ L + SIL G EL +P +I+E V +A Sbjct: 69 GVLMQAPELEKEIQPCLDR--PFNELSPVEISILLLGAYELERHPEIPYRAVINEAVELA 126 Query: 135 HDFFYGDEPKFINAVLDKVSRK 156 + K++N VLDK++ K Sbjct: 127 KAYGGTHGHKYVNGVLDKLAVK 148 >gi|170725747|ref|YP_001759773.1| transcription antitermination protein NusB [Shewanella woodyi ATCC 51908] gi|238688678|sp|B1KJK5|NUSB_SHEWM RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|169811094|gb|ACA85678.1| NusB antitermination factor [Shewanella woodyi ATCC 51908] Length = 134 Score = 60.1 bits (144), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 46/148 (31%), Positives = 75/148 (50%), Gaps = 15/148 (10%) Query: 10 LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF 69 +K S RR RLA VQA+Y + G + ++ E+E F + ++D +D+ +F Sbjct: 1 MKPSERRKARRLA-VQAIYSWQLSGNNIADV--EHE---FLTEQKID------GIDVTYF 48 Query: 70 RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISE 129 R ++ G ++ ID LI+ + + + I ++LR EL VP +V I+E Sbjct: 49 RELLSGTATKQAQIDELITPHIER--PYDEVSPIEKAVLRLATYELTFRKDVPYKVAINE 106 Query: 130 YVCIAHDFFYGDEPKFINAVLDK-VSRK 156 + +A F D KF+N +LDK V RK Sbjct: 107 AIELAKAFGAEDGHKFVNGILDKIVGRK 134 >gi|332534974|ref|ZP_08410792.1| transcription termination protein NusB [Pseudoalteromonas haloplanktis ANT/505] gi|332035592|gb|EGI72084.1| transcription termination protein NusB [Pseudoalteromonas haloplanktis ANT/505] Length = 136 Score = 60.1 bits (144), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 46/143 (32%), Positives = 72/143 (50%), Gaps = 14/143 (9%) Query: 10 LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF 69 +K + RR AR+ A+QA+Y I G +I + ++ +E+ +D+E+F Sbjct: 1 MKPAARRK-ARILALQAVYSWQISGNLIADI-----------EQQMLIETDVTKIDVEYF 48 Query: 70 RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISE 129 + + GV + +D +S LT F LDM+ +ILR EL VP +V I+E Sbjct: 49 KDLATGVAVNYKQLDEAVSPHLTR--PFDDLDMVERAILRLSSYELKFREDVPYKVAINE 106 Query: 130 YVCIAHDFFYGDEPKFINAVLDK 152 + +A F D KF+N VLDK Sbjct: 107 GIELAKIFGAEDSHKFVNGVLDK 129 >gi|270157438|ref|ZP_06186095.1| transcription antitermination factor NusB [Legionella longbeachae D-4968] gi|289164170|ref|YP_003454308.1| N utilization substance protein B homolog [Legionella longbeachae NSW150] gi|269989463|gb|EEZ95717.1| transcription antitermination factor NusB [Legionella longbeachae D-4968] gi|288857343|emb|CBJ11171.1| putative N utilization substance protein B homolog [Legionella longbeachae NSW150] Length = 147 Score = 60.1 bits (144), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 38/138 (27%), Positives = 73/138 (52%), Gaps = 13/138 (9%) Query: 19 ARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMD 78 AR A+QALYQ + G EI +++ ++D VD+++F ++HGV + Sbjct: 12 ARKLALQALYQWLMAGTEVCEIEAQFRVI-----NKMD------KVDVDYFCRLLHGVPE 60 Query: 79 RKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFF 138 ++ I+ L + S L+ I ++LR G EL+ C +P +V++ E + + +F Sbjct: 61 HVASLETSITPFLDRE--ISALNPIELTVLRLGSFELLYCPEIPYKVVLDEAISLTKEFG 118 Query: 139 YGDEPKFINAVLDKVSRK 156 D +++N VL+ ++R+ Sbjct: 119 SQDGYRYVNGVLNNLARQ 136 >gi|116748821|ref|YP_845508.1| NusB antitermination factor [Syntrophobacter fumaroxidans MPOB] gi|166215725|sp|A0LI21|NUSB_SYNFM RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|116697885|gb|ABK17073.1| NusB antitermination factor [Syntrophobacter fumaroxidans MPOB] Length = 151 Score = 60.1 bits (144), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 41/146 (28%), Positives = 68/146 (46%), Gaps = 20/146 (13%) Query: 15 RRGIARLAAVQALYQIDIIGCSTTEIISEY-------ETYRFCADTELDVESVYLHVDLE 67 RR +R A+Q LYQ+++ E + Y E +R A+ E Sbjct: 3 RRRRSREMALQVLYQMEMAVLPPEEALGLYYQLFDDDEKHRVPAEVRPFAEE-------- 54 Query: 68 WFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVII 127 I+ GV + ID +I+S +E W +R+ ++ +ILR V E++ C +P +V I Sbjct: 55 ----IVRGVSLHRARIDEMITSA-SEHWRLARMSLVDRNILRIAVFEMLFCFDIPPKVSI 109 Query: 128 SEYVCIAHDFFYGDEPKFINAVLDKV 153 +E + + F D FIN +LD + Sbjct: 110 NEAIDLGKTFGSPDSGAFINGILDHI 135 >gi|315646327|ref|ZP_07899447.1| NusB antitermination factor [Paenibacillus vortex V453] gi|315278526|gb|EFU41842.1| NusB antitermination factor [Paenibacillus vortex V453] Length = 152 Score = 60.1 bits (144), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 43/147 (29%), Positives = 73/147 (49%), Gaps = 18/147 (12%) Query: 15 RRGIARLAAVQALYQIDIIGCSTTEIIS--------EYETYRFCADTELDVESVYLHVDL 66 +R +AR VQ+LYQ+++ + E +S E ET R D E+ ++ L Sbjct: 2 KRRVAREIVVQSLYQMEMNEVDSMEAVSMLLSEAAEENETERVIGD-EVQMKEYVLQ--- 57 Query: 67 EWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVI 126 +++G + K+ ID L++ L + W SRL + ILR V EL VP +V Sbjct: 58 -----LVNGTWESKESIDELLAHYL-KGWQVSRLSRVDRQILRLAVYELSSREDVPGKVA 111 Query: 127 ISEYVCIAHDFFYGDEPKFINAVLDKV 153 ++E + ++ F + KF+N VL ++ Sbjct: 112 VNEAIELSKHFGTDESGKFVNGVLGRM 138 >gi|108757895|ref|YP_632923.1| transcription antitermination factor NusB [Myxococcus xanthus DK 1622] gi|119390787|sp|Q1D350|NUSB_MYXXD RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|108461775|gb|ABF86960.1| transcription antitermination factor NusB [Myxococcus xanthus DK 1622] Length = 140 Score = 60.1 bits (144), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 41/140 (29%), Positives = 70/140 (50%), Gaps = 10/140 (7%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVD-LEWFRVIIH 74 R R A+QALYQ+++ +T E + E+ A+ ES D +++ R ++ Sbjct: 4 RRTGRERALQALYQLEMATATTAEAL---ESAWSAAE-----ESNKRDPDAVKFARELVE 55 Query: 75 GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134 GV + ID LI + W R+ I ++LR G+ EL +P +V I+E V + Sbjct: 56 GVQSHRDEIDQLIERH-SHNWRLDRMSRIDRNVLRLGIFELKYRPDIPRKVSINEAVELG 114 Query: 135 HDFFYGDEPKFINAVLDKVS 154 +F + F+N +LD+V+ Sbjct: 115 KNFGNEESSAFVNGLLDRVA 134 >gi|310829051|ref|YP_003961408.1| antitermination protein NusB [Eubacterium limosum KIST612] gi|308740785|gb|ADO38445.1| antitermination protein NusB [Eubacterium limosum KIST612] Length = 152 Score = 60.1 bits (144), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 40/135 (29%), Positives = 71/135 (52%), Gaps = 3/135 (2%) Query: 20 RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79 R A++ ++QID E+ + + + F + D E + + + +I+ ++ Sbjct: 11 RELALRGIFQIDF-HAEDAELDTSLKNF-FELAGQGDPEDEVSGMTGGYAKKVINAALEN 68 Query: 80 KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139 + ID LI+S L E W FSR+ + +ILR GV EL+ VP EV I+E V +A + Sbjct: 69 QGAIDALIASHLKETWDFSRVPKMEKAILRLGVTELLYT-KVPKEVAINEAVELAKKYAS 127 Query: 140 GDEPKFINAVLDKVS 154 + +IN +L++V+ Sbjct: 128 EESKTYINGILNRVA 142 >gi|42527164|ref|NP_972262.1| transcription antitermination protein NusB [Treponema denticola ATCC 35405] gi|81570229|sp|Q73M53|NUSB_TREDE RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|41817588|gb|AAS12173.1| N utilization substance protein B [Treponema denticola ATCC 35405] Length = 136 Score = 60.1 bits (144), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 41/147 (27%), Positives = 70/147 (47%), Gaps = 12/147 (8%) Query: 10 LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF 69 + + RRG R+ A QAL D+ G ++ + + + + + + YL Sbjct: 1 MSVGRRRG--RILAFQALVAWDVGGA----VLDDLLNFSWQNEDSIKDPNGYLFP----- 49 Query: 70 RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISE 129 ++++ G ++ ID +I L + W RL+ + +ILR V LI P ++I E Sbjct: 50 KMMVLGTIENITEIDKVIQENL-DNWVIDRLNSVDKAILRLSVYSLIYQKDTPPPIVIDE 108 Query: 130 YVCIAHDFFYGDEPKFINAVLDKVSRK 156 + +A DF D KF+NAVLD + K Sbjct: 109 AINLAKDFGTDDSYKFVNAVLDSIKNK 135 >gi|256827876|ref|YP_003156604.1| NusB antitermination factor [Desulfomicrobium baculatum DSM 4028] gi|256577052|gb|ACU88188.1| NusB antitermination factor [Desulfomicrobium baculatum DSM 4028] Length = 154 Score = 60.1 bits (144), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 38/146 (26%), Positives = 73/146 (50%), Gaps = 11/146 (7%) Query: 12 LSHRRGIARLAAVQALYQIDIIG--CSTTEIISEYETYRFCADTELDVESVYLHVDLEWF 69 ++H R R A Q +Y + + G S +I ++ F + E D+E + W Sbjct: 1 MTHNRRHQRRFAFQVIYSL-VFGQKMSKDSLIKSFDN--FWTEEEFDMERQDSYA---W- 53 Query: 70 RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISE 129 ++ GV D ID +I+ ++ W +R+ + +ILR + E++ C +P++V ++E Sbjct: 54 -TLVEGVFDNYDSIDEIITQH-SQHWKLNRIAKVELTILRLSLFEMLFCPDIPIKVAMNE 111 Query: 130 YVCIAHDFFYGDEPKFINAVLDKVSR 155 + +A DF + F+N VLD ++ Sbjct: 112 AIELAKDFGDDNSKTFVNGVLDAAAK 137 >gi|30022264|ref|NP_833895.1| transcription antitermination protein NusB [Bacillus cereus ATCC 14579] gi|206971091|ref|ZP_03232042.1| N utilization substance protein B [Bacillus cereus AH1134] gi|218233314|ref|YP_002368985.1| transcription antitermination protein NusB [Bacillus cereus B4264] gi|218899346|ref|YP_002447757.1| N utilization substance protein B [Bacillus cereus G9842] gi|228902700|ref|ZP_04066847.1| N utilization substance protein B [Bacillus thuringiensis IBL 4222] gi|228910018|ref|ZP_04073838.1| N utilization substance protein B [Bacillus thuringiensis IBL 200] gi|228922937|ref|ZP_04086231.1| N utilization substance protein B [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228967223|ref|ZP_04128259.1| N utilization substance protein B [Bacillus thuringiensis serovar sotto str. T04001] gi|228974275|ref|ZP_04134844.1| N utilization substance protein B [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|296504671|ref|YP_003666371.1| transcription antitermination protein NusB [Bacillus thuringiensis BMB171] gi|39931865|sp|Q818R4|NUSB_BACCR RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|226737439|sp|B7IXH3|NUSB_BACC2 RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|226737885|sp|B7HB53|NUSB_BACC4 RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|29897821|gb|AAP11096.1| N utilization substance protein B [Bacillus cereus ATCC 14579] gi|206733863|gb|EDZ51034.1| N utilization substance protein B [Bacillus cereus AH1134] gi|218161271|gb|ACK61263.1| N utilization substance protein B [Bacillus cereus B4264] gi|218545985|gb|ACK98379.1| N utilization substance protein B [Bacillus cereus G9842] gi|228785325|gb|EEM33335.1| N utilization substance protein B [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228792592|gb|EEM40158.1| N utilization substance protein B [Bacillus thuringiensis serovar sotto str. T04001] gi|228836708|gb|EEM82055.1| N utilization substance protein B [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228849535|gb|EEM94369.1| N utilization substance protein B [Bacillus thuringiensis IBL 200] gi|228856887|gb|EEN01400.1| N utilization substance protein B [Bacillus thuringiensis IBL 4222] gi|296325723|gb|ADH08651.1| transcription antitermination protein NusB [Bacillus thuringiensis BMB171] gi|326941963|gb|AEA17859.1| transcription antitermination protein [Bacillus thuringiensis serovar chinensis CT-43] Length = 130 Score = 60.1 bits (144), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 47/142 (33%), Positives = 68/142 (47%), Gaps = 18/142 (12%) Query: 15 RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74 +R AR A+QALYQ+DI G E E +T + E E+ ++ Sbjct: 2 KRRTARERAMQALYQMDITG--------ELEPKVAVENTLDEGEETN-----EFLESLVV 48 Query: 75 GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134 G ++ K+ ID I L +KW R+ ++ SILR V E+ +P V I+E + IA Sbjct: 49 GFVENKEAIDEAIRQNL-KKWKLERISIVDRSILRVAVYEMKYMEEIPHNVTINEAIEIA 107 Query: 135 HDFFYGDEP--KFINAVLDKVS 154 F GDE +FIN VL + Sbjct: 108 KTF--GDEESRRFINGVLSNIK 127 >gi|225873914|ref|YP_002755373.1| transcription antitermination factor NusB [Acidobacterium capsulatum ATCC 51196] gi|225793742|gb|ACO33832.1| transcription antitermination factor NusB [Acidobacterium capsulatum ATCC 51196] Length = 144 Score = 60.1 bits (144), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 43/147 (29%), Positives = 77/147 (52%), Gaps = 11/147 (7%) Query: 10 LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF 69 + + +R +R A+Q L+Q D+ G T + + + T+ + A E++ ++ DL F Sbjct: 1 MTTTGKRRKSRELAMQMLFQADV-GKQTPDDVRK--TF-WEAREEVEPDTRGFAEDL--F 54 Query: 70 RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISE 129 RV M+R++ ID LI + W SR+ + ++LR + EL+ P +II+E Sbjct: 55 RV----AMNREEEIDTLIEQH-SANWKLSRMAAVDRNVLRMAIAELLGFPGTPAPIIINE 109 Query: 130 YVCIAHDFFYGDEPKFINAVLDKVSRK 156 + IA + + F+N VLD +SR+ Sbjct: 110 ALEIARRYSAPESVNFLNGVLDAISRQ 136 >gi|90579826|ref|ZP_01235634.1| transcription antitermination protein NusB [Vibrio angustum S14] gi|330445271|ref|ZP_08308923.1| transcription antitermination factor NusB [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] gi|90438711|gb|EAS63894.1| transcription antitermination protein NusB [Vibrio angustum S14] gi|328489462|dbj|GAA03420.1| transcription antitermination factor NusB [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] Length = 156 Score = 60.1 bits (144), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 45/155 (29%), Positives = 78/155 (50%), Gaps = 9/155 (5%) Query: 10 LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYL---HVDL 66 +K + RR AR AVQA+Y + + +I + + + E ++ L H D+ Sbjct: 5 VKPAARRN-ARQFAVQAIYSWQLTKGNVADIEQHFLSGDKFEEEEHQADAPVLAAPHTDV 63 Query: 67 EWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVI 126 +FR + GV+ Q +D + L+ LD + ++LR + E+++ VP +V+ Sbjct: 64 SYFRDLFTGVVLSHQELDSKMRPYLSR--PLQDLDQMELALLRLAMYEMVKREDVPFKVV 121 Query: 127 ISEYVCIAHDFFYGDEPKFINAVLDKVS---RKEE 158 I+E + +A F D KF+N VLDK + RKE+ Sbjct: 122 INEAIELAKLFGAEDSHKFVNGVLDKAAPTLRKEK 156 >gi|203287574|ref|YP_002222589.1| N-utilization substance protein B [Borrelia recurrentis A1] gi|201084794|gb|ACH94368.1| N-utilization substance protein B [Borrelia recurrentis A1] Length = 146 Score = 60.1 bits (144), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 46/151 (30%), Positives = 75/151 (49%), Gaps = 15/151 (9%) Query: 10 LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF 69 + L H+ AR+ A Q +Y ID+ C + I ++ + F + + L DL+ F Sbjct: 3 MDLRHK---ARILAFQKIYSIDV-NCKAKDNI--FDIFSF------EENGIDLDGDLKLF 50 Query: 70 -RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLEL-IECHSVPVEVII 127 V+++G D + ID LIS ++ W R+D + +ILR V L + VP VII Sbjct: 51 YSVLVNGTYDNLESIDKLISG-ISLNWRLDRMDKVDLAILRMSVYSLKFQDLDVPKRVII 109 Query: 128 SEYVCIAHDFFYGDEPKFINAVLDKVSRKEE 158 E + IA + + KF+N +LD + + E Sbjct: 110 DEAILIAKKYGNKNSDKFVNGILDALLKDME 140 >gi|170717533|ref|YP_001784622.1| transcription antitermination protein NusB [Haemophilus somnus 2336] gi|189035891|sp|B0UU23|NUSB_HAES2 RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|168825662|gb|ACA31033.1| NusB antitermination factor [Haemophilus somnus 2336] Length = 144 Score = 60.1 bits (144), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 49/144 (34%), Positives = 72/144 (50%), Gaps = 12/144 (8%) Query: 11 KLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFR 70 K+S RR AR AVQ LY I S EI F D + +++ V D+ +FR Sbjct: 7 KISPRRR-ARECAVQNLYSWAISKNSPEEI-----ELNFIVDQDNEMKGV----DMPYFR 56 Query: 71 VIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEY 130 + H ++ + ID ++ L LD I C+ILR V EL VP +V+I+E Sbjct: 57 KLFHQTINHVETIDSTMAPYLDR--DNVELDPIECAILRLAVYELKFELDVPYKVVINEA 114 Query: 131 VCIAHDFFYGDEPKFINAVLDKVS 154 + +A F + K+IN VLDK++ Sbjct: 115 IEVAKVFGAEESHKYINGVLDKIA 138 >gi|239827671|ref|YP_002950295.1| transcription antitermination protein NusB [Geobacillus sp. WCH70] gi|239807964|gb|ACS25029.1| NusB antitermination factor [Geobacillus sp. WCH70] Length = 133 Score = 59.7 bits (143), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 42/140 (30%), Positives = 66/140 (47%), Gaps = 16/140 (11%) Query: 15 RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74 +R AR A+QAL+Q+D+ I E E+D + R ++ Sbjct: 3 KRHEAREKALQALFQVDV-----GHIPPEEALQNVTGGKEVD----------PFLRQLVI 47 Query: 75 GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134 GV + ++ ID L+ + L EKW+ R+ + +ILR E+ VPV+V + E V +A Sbjct: 48 GVTEHQEEIDALLRANL-EKWTLERVANVDRAILRMATYEMKYVDDVPVKVSLDEAVELA 106 Query: 135 HDFFYGDEPKFINAVLDKVS 154 F +F+N VL KV Sbjct: 107 KKFGDTKSGRFVNGVLSKVK 126 >gi|194333302|ref|YP_002015162.1| NusB antitermination factor [Prosthecochloris aestuarii DSM 271] gi|238693314|sp|B4S517|NUSB_PROA2 RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|194311120|gb|ACF45515.1| NusB antitermination factor [Prosthecochloris aestuarii DSM 271] Length = 168 Score = 59.7 bits (143), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 45/155 (29%), Positives = 76/155 (49%), Gaps = 15/155 (9%) Query: 13 SHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVI 72 +HRR I R VQALY +D+ T T D + + +F+ + Sbjct: 3 AHRRHI-REKIVQALYTLDVRDTDTATAGDWLITPEISKDPKA----------IRFFKQL 51 Query: 73 IHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVC 132 + ++D ++ ID IS T W SR+ +I +ILR + E++ +P +V I+E + Sbjct: 52 LGAIVDNREEIDQYISKH-TFNWDMSRIAIIDKNILRMAMAEILYFEDIPPKVSINEAIE 110 Query: 133 IAHDFFYGDE-PKFINAVLDKVSRKEEIKRSGCVS 166 IA F D+ KF+N +LD V ++ +SG ++ Sbjct: 111 IAKKFNSTDKSSKFVNGILDAVY--NDLNKSGKIN 143 >gi|289675585|ref|ZP_06496475.1| transcription antitermination protein NusB [Pseudomonas syringae pv. syringae FF5] Length = 127 Score = 59.7 bits (143), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 43/135 (31%), Positives = 65/135 (48%), Gaps = 20/135 (14%) Query: 2 TIQDNKKDLK-------LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTE 54 T Q N +D K S +R AR A QALYQ + G S EI +++ Sbjct: 6 TDQFNPRDAKSPEAAKGKSAKRREARQMATQALYQWHMAGHSLNEIEAQFR--------- 56 Query: 55 LDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLE 114 V++ + +VD +F ++HGV K ID +S CL + LD + ++LR E Sbjct: 57 --VDNDFSNVDGTYFHELLHGVATNKTEIDTALSPCL--DLTIEELDPVELAVLRLSTFE 112 Query: 115 LIECHSVPVEVIISE 129 L++ VP V+I+E Sbjct: 113 LLKRIDVPYRVVINE 127 >gi|225619886|ref|YP_002721143.1| transcription antitermination protein NusB [Brachyspira hyodysenteriae WA1] gi|225214705|gb|ACN83439.1| transcription antitermination protein NusB [Brachyspira hyodysenteriae WA1] Length = 181 Score = 59.7 bits (143), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 49/158 (31%), Positives = 78/158 (49%), Gaps = 17/158 (10%) Query: 4 QDNKKDLKLSH--RRGIARLAAVQALYQIDIIGCSTT--EIISEYETYRFCADTELDVES 59 ++N KDL LS R AR+ AV +LY +I T EI+S F D ++ E+ Sbjct: 35 KENIKDLDLSSYGARRQARIYAVMSLYSYEINDRKETINEILS------FDYDKKI-PEN 87 Query: 60 VYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECH 119 ++ E+ R ++ G ++ + ID LI + W R+ + SI+R + LI Sbjct: 88 IF-----EFTRTLVEGTINNLERIDNLIEKY-SNNWDIKRIQYVDKSIIRMSIYSLIFLK 141 Query: 120 SVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKE 157 +P V+I E V I+ F D KF+N +LD + K+ Sbjct: 142 DIPKSVVIDEAVEISKIFSDKDSYKFVNGILDGIQEKD 179 >gi|311693386|gb|ADP96259.1| transcription antitermination protein NusB [marine bacterium HP15] Length = 158 Score = 59.7 bits (143), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 42/136 (30%), Positives = 68/136 (50%), Gaps = 13/136 (9%) Query: 19 ARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMD 78 AR A+Q LYQ + ++I +E F D ++ VDL +FR ++ GV Sbjct: 25 ARALAMQGLYQRHFSKTAISDIEAE-----FMVDNDMS------KVDLLYFRDLLRGVHR 73 Query: 79 RKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFF 138 + +D LI L +D + +I+R G EL VP +V+I+E + +A F Sbjct: 74 EQGELDKLIEPFLDR--PIKEVDPVELAIVRLGAYELKHRLDVPYKVVINEGIEMAKRFG 131 Query: 139 YGDEPKFINAVLDKVS 154 + KF+N++LDK+S Sbjct: 132 GTEGHKFVNSILDKLS 147 >gi|91205934|ref|YP_538289.1| transcription antitermination protein NusB [Rickettsia bellii RML369-C] gi|157826705|ref|YP_001495769.1| transcription antitermination protein NusB [Rickettsia bellii OSU 85-389] gi|119390813|sp|Q1RHG4|NUSB_RICBR RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|166215711|sp|A8GV61|NUSB_RICB8 RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|91069478|gb|ABE05200.1| N utilization substance protein B [Rickettsia bellii RML369-C] gi|157802009|gb|ABV78732.1| transcription antitermination protein NusB [Rickettsia bellii OSU 85-389] Length = 156 Score = 59.7 bits (143), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 30/110 (27%), Positives = 64/110 (58%) Query: 49 FCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSIL 108 + DT + + + + + F++++ V + ID +IS+ L + + + ++L ++L Sbjct: 42 YRNDTSMTDSPIKISLTISHFKMLVKLVFENIDKIDEIISNHLVNDKNQNHIPILLQALL 101 Query: 109 RAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEE 158 R+G+ EL+ +P +VII+EY IA+D E F+N++LDK++ + + Sbjct: 102 RSGICELLFFPDIPTKVIINEYTDIANDMLNDHEIGFVNSILDKIAHENK 151 >gi|203284032|ref|YP_002221772.1| N-utilization substance protein B [Borrelia duttonii Ly] gi|201083475|gb|ACH93066.1| N-utilization substance protein B [Borrelia duttonii Ly] Length = 146 Score = 59.7 bits (143), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 46/151 (30%), Positives = 75/151 (49%), Gaps = 15/151 (9%) Query: 10 LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF 69 + L H+ AR+ A Q +Y ID+ C + I ++ + F + + L DL+ F Sbjct: 3 MDLRHK---ARVLAFQKIYSIDV-NCKAKDNI--FDIFSF------EENGIDLDGDLKLF 50 Query: 70 -RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLEL-IECHSVPVEVII 127 V+++G D + ID LIS ++ W R+D + +ILR V L + VP VII Sbjct: 51 YSVLVNGTYDNLESIDKLISG-ISLNWRLDRMDKVDLAILRMSVYSLKFQDLDVPKRVII 109 Query: 128 SEYVCIAHDFFYGDEPKFINAVLDKVSRKEE 158 E + IA + + KF+N +LD + + E Sbjct: 110 DEAILIAKKYGNKNSDKFVNGILDALLKDME 140 >gi|172056940|ref|YP_001813400.1| NusB antitermination factor [Exiguobacterium sibiricum 255-15] gi|171989461|gb|ACB60383.1| NusB antitermination factor [Exiguobacterium sibiricum 255-15] Length = 141 Score = 59.7 bits (143), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 45/156 (28%), Positives = 73/156 (46%), Gaps = 30/156 (19%) Query: 15 RRGIARLAAVQALYQIDIIGCSTTEII------SEYETYRFCADTELDVESVYLHVDLEW 68 +R +AR AVQ+L+Q+++ S E I EY+T+ Sbjct: 3 KRHMARELAVQSLFQMELSDLSAQEAIEFAVEGKEYDTF--------------------- 41 Query: 69 FRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIIS 128 ++ GV K ID + + L WSF R+ I +ILR V EL+ +PV V I+ Sbjct: 42 VTRLVEGVEANKPEIDQKLRAALV-NWSFERIGNIERTILRLAVYELLFEAKIPVRVTIN 100 Query: 129 EYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRSGC 164 E + + F + K +N VL KV+ +E++++G Sbjct: 101 EAIELTKAFADEEATKIVNGVLGKVA--QEVEQNGL 134 >gi|163750010|ref|ZP_02157254.1| transcription antitermination protein NusB [Shewanella benthica KT99] gi|161330284|gb|EDQ01265.1| transcription antitermination protein NusB [Shewanella benthica KT99] Length = 134 Score = 59.7 bits (143), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 48/148 (32%), Positives = 73/148 (49%), Gaps = 15/148 (10%) Query: 10 LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF 69 +K S RR RLA VQA+Y + G + ++ E+E F + ++D +D+ +F Sbjct: 1 MKPSERRKARRLA-VQAIYSWQLSGNNIADV--EHE---FLTEQKID------GIDVAYF 48 Query: 70 RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISE 129 R + G + ID LI + F+ + I +ILR EL VP +V I+E Sbjct: 49 RELFTGTTTKSAQIDELIIPHVER--PFAEVSPIEKAILRMATYELTFRKDVPYKVAINE 106 Query: 130 YVCIAHDFFYGDEPKFINAVLDK-VSRK 156 + +A F D KF+N +LDK V RK Sbjct: 107 AIELAKTFGAEDGHKFVNGILDKIVGRK 134 >gi|257792277|ref|YP_003182883.1| NusB antitermination factor [Eggerthella lenta DSM 2243] gi|257476174|gb|ACV56494.1| NusB antitermination factor [Eggerthella lenta DSM 2243] Length = 195 Score = 59.7 bits (143), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 43/143 (30%), Positives = 71/143 (49%), Gaps = 14/143 (9%) Query: 14 HRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVII 73 H R AR AA+Q LY T+EI E ++ LD + E+ ++ Sbjct: 6 HERTSARRAALQVLY--------TSEITDESPAAIAEGNSRLDEDGPLP----EYALKLV 53 Query: 74 HGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCI 133 GV + ID +++ +E WS +R+ ++ SILR E++ VP V I+E V + Sbjct: 54 LGVESHRCAIDNHLAAT-SENWSLARMPIVDRSILRLATFEMMYIDDVPTSVTINEAVEL 112 Query: 134 AHDFFYGDEP-KFINAVLDKVSR 155 A DF DE +F+N +L ++++ Sbjct: 113 AKDFGGEDESHRFVNGILGRIAK 135 >gi|85858025|ref|YP_460227.1| transcription termination factor NusB [Syntrophus aciditrophicus SB] gi|119390838|sp|Q2LQK4|NUSB_SYNAS RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|85721116|gb|ABC76059.1| transcription termination factor NusB [Syntrophus aciditrophicus SB] Length = 161 Score = 59.7 bits (143), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 40/142 (28%), Positives = 66/142 (46%), Gaps = 12/142 (8%) Query: 15 RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74 +R IAR A+Q LY ++++ E I E Y + +D + ++I Sbjct: 14 QRRIAREIALQVLYSLEVVEMEAGEAI---ELYWAHYEAPMDARP--------FSSLLIE 62 Query: 75 GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134 G + ID LI C + WS +R+ + SILR V EL C +P +V ++E + + Sbjct: 63 GAWKHRDQIDSLIGGC-SANWSIARMSKVDKSILRMAVFELCFCEDIPPKVTMNEAIDLG 121 Query: 135 HDFFYGDEPKFINAVLDKVSRK 156 + + FIN +LD + K Sbjct: 122 KVYGSENSGSFINGILDALYAK 143 >gi|158522086|ref|YP_001529956.1| NusB antitermination factor [Desulfococcus oleovorans Hxd3] gi|226738897|sp|A8ZTU6|NUSB_DESOH RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|158510912|gb|ABW67879.1| NusB antitermination factor [Desulfococcus oleovorans Hxd3] Length = 154 Score = 59.3 bits (142), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 39/144 (27%), Positives = 71/144 (49%), Gaps = 11/144 (7%) Query: 13 SHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVI 72 S RR +R A+Q L+ D+ + + E FCA L E + H F + Sbjct: 3 SRRR--SRELALQFLFSYDLNAAGAGDFDAWMED--FCARFNLS-EKNFPH-----FFTL 52 Query: 73 IHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVC 132 GV +R + ++ L++ +E W SR+ + +++R + E++ C VP V I+E + Sbjct: 53 AQGVKNRWEKLNDLLAES-SEHWKLSRMSGVDRNVMRIAIFEMLYCDDVPPRVAINEAIE 111 Query: 133 IAHDFFYGDEPKFINAVLDKVSRK 156 I + + FIN VLD+++++ Sbjct: 112 IGKKYGTDESGAFINGVLDRINKE 135 >gi|229847453|ref|ZP_04467550.1| transcription antitermination protein NusB [Haemophilus influenzae 7P49H1] gi|229809594|gb|EEP45321.1| transcription antitermination protein NusB [Haemophilus influenzae 7P49H1] Length = 144 Score = 59.3 bits (142), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 45/148 (30%), Positives = 71/148 (47%), Gaps = 13/148 (8%) Query: 7 KKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDL 66 +K +K R AR VQALY + G + ++ F D ++D VD Sbjct: 4 QKQVKKPSARRRARECTVQALYSWAVSGNTAEQV-----ELAFVLDQDMD------GVDK 52 Query: 67 EWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVI 126 +FR + ++ + +D IS + +F LD I +ILR V EL VP +V+ Sbjct: 53 PYFRKLFRQTIENIETVDFSISPYIDR--TFDELDPIETAILRLAVYELRFELDVPYKVV 110 Query: 127 ISEYVCIAHDFFYGDEPKFINAVLDKVS 154 I+E + +A F + K+IN VLDK++ Sbjct: 111 INEAIEVAKVFGADESHKYINGVLDKIA 138 >gi|42783301|ref|NP_980548.1| transcription antitermination protein NusB [Bacillus cereus ATCC 10987] gi|81568850|sp|Q731B1|NUSB_BACC1 RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|42739229|gb|AAS43156.1| N utilization substance protein B [Bacillus cereus ATCC 10987] Length = 130 Score = 59.3 bits (142), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 47/142 (33%), Positives = 68/142 (47%), Gaps = 18/142 (12%) Query: 15 RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74 +R AR A+QALYQ+DI G +I E T +T E+ ++ Sbjct: 2 KRRTARERAMQALYQMDITGELEPKIAVE-NTLDEGEETN------------EFLESLVV 48 Query: 75 GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134 G ++ K+ ID I L +KW R+ ++ SILR V E+ +P V I+E + IA Sbjct: 49 GFVENKEVIDEAIRQNL-KKWKLERISIVDRSILRVAVYEMKYMEEIPHNVTINEAIEIA 107 Query: 135 HDFFYGDEP--KFINAVLDKVS 154 F GDE +FIN VL + Sbjct: 108 KTF--GDEESRRFINGVLSNIK 127 >gi|15644510|ref|NP_229562.1| transcription antitermination protein NusB [Thermotoga maritima MSB8] gi|7387977|sp|Q9X286|NUSB_THEMA RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|52695948|pdb|1TZT|A Chain A, T. Maritima Nusb, P21 gi|52695949|pdb|1TZT|B Chain B, T. Maritima Nusb, P21 gi|52695950|pdb|1TZU|A Chain A, T. Maritima Nusb, P212121 gi|52695951|pdb|1TZV|A Chain A, T. Maritima Nusb, P3121, Form 1 gi|52695952|pdb|1TZW|A Chain A, T. Maritima Nusb, P3121, Form 2 gi|52695953|pdb|1TZX|A Chain A, T. Maritima Nusb, P3221 gi|52695954|pdb|1TZX|B Chain B, T. Maritima Nusb, P3221 gi|4982344|gb|AAD36829.1|AE001815_3 N utilization substance protein B [Thermotoga maritima MSB8] gi|22859189|emb|CAD45556.1| N utilisation substance protein B [Expression vector pNCO113-TM-nusB] Length = 142 Score = 59.3 bits (142), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 45/153 (29%), Positives = 73/153 (47%), Gaps = 26/153 (16%) Query: 10 LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELD------VESVYLH 63 +K RR RLA +AL+Q + F D +L+ ++ Y Sbjct: 1 MKTPRRR--MRLAVFKALFQ-----------------HEFRRDEDLEQILEEILDETYDK 41 Query: 64 VDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPV 123 E R I G+ + ID LIS L EKWS +RL ++ ++LR EL+ +P+ Sbjct: 42 KAKEDARRYIRGIKENLSMIDDLISRYL-EKWSLNRLSVVDRNVLRLATYELLFEKDIPI 100 Query: 124 EVIISEYVCIAHDFFYGDEPKFINAVLDKVSRK 156 EV I E + IA + + KF+N +LD+++++ Sbjct: 101 EVTIDEAIEIAKRYGTENSGKFVNGILDRIAKE 133 >gi|148826048|ref|YP_001290801.1| transcription antitermination protein NusB [Haemophilus influenzae PittEE] gi|166215690|sp|A5UCB7|NUSB_HAEIE RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|148716208|gb|ABQ98418.1| transcription antitermination protein NusB [Haemophilus influenzae PittEE] gi|309973183|gb|ADO96384.1| Transcription antitermination protein NusB [Haemophilus influenzae R2846] Length = 144 Score = 59.3 bits (142), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 45/148 (30%), Positives = 71/148 (47%), Gaps = 13/148 (8%) Query: 7 KKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDL 66 +K +K R AR VQALY + G + ++ F D ++D VD Sbjct: 4 QKQVKKPSARRRARECTVQALYSWAVSGNTAEQV-----ELAFVLDQDMD------GVDK 52 Query: 67 EWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVI 126 +FR + ++ + +D IS + +F LD I +ILR V EL VP +V+ Sbjct: 53 PYFRKLFRQTIENIETVDFSISPYIDR--TFDELDPIETAILRLAVYELRFELDVPYKVV 110 Query: 127 ISEYVCIAHDFFYGDEPKFINAVLDKVS 154 I+E + +A F + K+IN VLDK++ Sbjct: 111 INEAIEVAKVFGADESHKYINGVLDKIA 138 >gi|224370206|ref|YP_002604370.1| NusB [Desulfobacterium autotrophicum HRM2] gi|259514822|sp|C0QKW6|NUSB_DESAH RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|223692923|gb|ACN16206.1| NusB [Desulfobacterium autotrophicum HRM2] Length = 143 Score = 59.3 bits (142), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 42/145 (28%), Positives = 72/145 (49%), Gaps = 12/145 (8%) Query: 19 ARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDV-ESVYLHVDLEWFRVIIHGVM 77 AR A+QALY D+ S E+++ FC++ E + ES+ +F ++ GV Sbjct: 7 ARELALQALYYFDVDKGSPDELLA-----LFCSNFEDRIDESIR-----PFFLDLVKGVT 56 Query: 78 DRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDF 137 + +D L++ + W SR+ ++ +I+R + E+++ +P V I+E V I F Sbjct: 57 QARAEVDDLMNRS-SSNWKVSRMPIVDRNIMRMAIFEMLKQPDIPPTVSINEAVEIGKRF 115 Query: 138 FYGDEPKFINAVLDKVSRKEEIKRS 162 FIN VLDK+ + I R Sbjct: 116 GTRGSGAFINGVLDKIRVLKNIDRG 140 >gi|169629920|ref|YP_001703569.1| transcription antitermination protein NusB [Mycobacterium abscessus ATCC 19977] gi|169241887|emb|CAM62915.1| Probable transcription antitermination factor NusB [Mycobacterium abscessus] Length = 173 Score = 59.3 bits (142), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 31/82 (37%), Positives = 45/82 (54%), Gaps = 1/82 (1%) Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131 + HGV + HID LISS L + W+ +RL + +ILR V EL+ VP V + E V Sbjct: 76 VAHGVTEHAAHIDELISSHL-QGWTLARLPAVDRAILRVAVWELLHAQDVPEVVAVDEAV 134 Query: 132 CIAHDFFYGDEPKFINAVLDKV 153 +A + P F+N VL ++ Sbjct: 135 ELAKQLSTDESPAFVNGVLGQL 156 >gi|170288851|ref|YP_001739089.1| NusB antitermination factor [Thermotoga sp. RQ2] gi|281412471|ref|YP_003346550.1| NusB antitermination factor [Thermotoga naphthophila RKU-10] gi|238688836|sp|B1LAQ8|NUSB_THESQ RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|170176354|gb|ACB09406.1| NusB antitermination factor [Thermotoga sp. RQ2] gi|281373574|gb|ADA67136.1| NusB antitermination factor [Thermotoga naphthophila RKU-10] Length = 142 Score = 59.3 bits (142), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 45/153 (29%), Positives = 72/153 (47%), Gaps = 26/153 (16%) Query: 10 LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELD------VESVYLH 63 +K RR RLA +AL+Q + F D +L+ ++ Y Sbjct: 1 MKTPRRR--MRLAVFKALFQ-----------------HEFRRDEDLEQILEEILDETYDK 41 Query: 64 VDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPV 123 E R I G+ + ID LIS L EKWS +RL + ++LR EL+ +P+ Sbjct: 42 KAKEDARRYIRGIKENLPMIDNLISRYL-EKWSLNRLSAVDRNVLRLATYELLFEKDIPI 100 Query: 124 EVIISEYVCIAHDFFYGDEPKFINAVLDKVSRK 156 EV I E + IA + + KF+N +LD+++++ Sbjct: 101 EVTIDEAIEIAKRYGTENSGKFVNGILDRIAKE 133 >gi|296133218|ref|YP_003640465.1| NusB antitermination factor [Thermincola sp. JR] gi|296031796|gb|ADG82564.1| NusB antitermination factor [Thermincola potens JR] Length = 142 Score = 59.3 bits (142), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 44/160 (27%), Positives = 74/160 (46%), Gaps = 31/160 (19%) Query: 12 LSHRRGIARLAAVQALYQIDIIGCSTTE----IISEYE----TYRFCADTELDVESVYLH 63 +S R+ AR AA+Q L+QI++ G + I SE+ +FC Sbjct: 1 MSRRK--AREAALQVLFQIEMAGVEEEKAYEYIFSEFNIGENAQKFC------------- 45 Query: 64 VDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPV 123 R ++ G + + +ID +I E W R+ + +I+R + E++ VP Sbjct: 46 ------RELVQGTLRNRAYIDDIIREVSNE-WDLYRMANVDRNIIRMALYEMLFREDVPK 98 Query: 124 EVIISEYVCIAHDFFYGDEPKFINAVLDKVSRK-EEIKRS 162 V I+E + + DF D KFIN +L V++ E+ KR+ Sbjct: 99 NVAINEAIELGKDFSTADSGKFINGILGYVAKNMEQFKRT 138 >gi|295399119|ref|ZP_06809101.1| NusB antitermination factor [Geobacillus thermoglucosidasius C56-YS93] gi|312110278|ref|YP_003988594.1| NusB antitermination factor [Geobacillus sp. Y4.1MC1] gi|294978585|gb|EFG54181.1| NusB antitermination factor [Geobacillus thermoglucosidasius C56-YS93] gi|311215379|gb|ADP73983.1| NusB antitermination factor [Geobacillus sp. Y4.1MC1] Length = 132 Score = 59.3 bits (142), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 43/140 (30%), Positives = 65/140 (46%), Gaps = 16/140 (11%) Query: 15 RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74 +R AR A+QAL+QID+ I E E D + R ++ Sbjct: 2 KRHEAREKALQALFQIDV-----GRIPPEEALQNVMGGEEAD----------SFLRQLVF 46 Query: 75 GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134 GV + ++ ID L+ + L EKW+ R+ + +ILR E+ VPV+V + E V +A Sbjct: 47 GVTEHQEEIDELLRANL-EKWTLERVANVDRAILRMAAYEMKYLDDVPVKVSLDEAVELA 105 Query: 135 HDFFYGDEPKFINAVLDKVS 154 F +F+N VL KV Sbjct: 106 KKFGDTKSGRFVNGVLSKVK 125 >gi|187931389|ref|YP_001891373.1| transcription antitermination factor NusB [Francisella tularensis subsp. mediasiatica FSC147] gi|187712298|gb|ACD30595.1| transcription antitermination factor NusB [Francisella tularensis subsp. mediasiatica FSC147] Length = 141 Score = 59.3 bits (142), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 47/147 (31%), Positives = 71/147 (48%), Gaps = 13/147 (8%) Query: 10 LKLSHR-RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEW 68 +K + R R ARL AVQALYQ I + +E+ +Y Y AD + D + Sbjct: 1 MKTTARARNNARLYAVQALYQKKIADNTFSELKIQY--YADNADRH--------YTDWDL 50 Query: 69 FRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIIS 128 F +I V + ID I + ++ + ++L+ + ELIEC P +VII Sbjct: 51 FYRLIDAVKTNQDTIDKYIKENSSN--GVESINYVDYAVLQVAIAELIECLENPYQVIIK 108 Query: 129 EYVCIAHDFFYGDEPKFINAVLDKVSR 155 EYV I + + KFINAVL +++ Sbjct: 109 EYVGICYSMGTEEGYKFINAVLQNLAK 135 >gi|189485423|ref|YP_001956364.1| transcription antitermination factor NusB [uncultured Termite group 1 bacterium phylotype Rs-D17] gi|170287382|dbj|BAG13903.1| transcription antitermination factor NusB [uncultured Termite group 1 bacterium phylotype Rs-D17] Length = 142 Score = 59.3 bits (142), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 38/140 (27%), Positives = 63/140 (45%), Gaps = 12/140 (8%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 R AR ++ LY +D I + + Y Y L+ F+ G Sbjct: 4 RRKARECSLHMLYAVDNCNVPIESIYNSFAVY-------FPKGEAYRMFALDLFK----G 52 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135 V D K+ +D LI C + W R+ + +I+R E++ ++P+ VII E V I+ Sbjct: 53 VCDNKEDLDSLIKQC-AKNWEIERMAAVDRNIIRLATYEIMATTNIPIRVIIDEAVEISK 111 Query: 136 DFFYGDEPKFINAVLDKVSR 155 + D KF+N +LDK+ + Sbjct: 112 KYSTKDSSKFVNGILDKLKK 131 >gi|149200420|ref|ZP_01877436.1| NusB antitermination factor [Lentisphaera araneosa HTCC2155] gi|149136489|gb|EDM24926.1| NusB antitermination factor [Lentisphaera araneosa HTCC2155] Length = 156 Score = 59.3 bits (142), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 46/146 (31%), Positives = 67/146 (45%), Gaps = 8/146 (5%) Query: 14 HRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF---R 70 + R + R A+Q LYQ DI E E F E + H + F R Sbjct: 8 NPRSLGRKWALQYLYQSDIAKLE----FQEEEFALFIDQIENAPSAPNEHESSKGFAFAR 63 Query: 71 VIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEY 130 II GV+D+ + ID I+ + W R+ ++LR V EL+E S VI++E Sbjct: 64 EIIQGVLDKVKEIDAYITEE-AKNWKIDRMATTDRNVLRIAVFELMEIKSNHPVVIVNEA 122 Query: 131 VCIAHDFFYGDEPKFINAVLDKVSRK 156 V +A F D KF+N + D ++RK Sbjct: 123 VELAKTFGNTDSFKFVNGIGDTLARK 148 >gi|296269370|ref|YP_003652002.1| NusB antitermination factor [Thermobispora bispora DSM 43833] gi|296092157|gb|ADG88109.1| NusB antitermination factor [Thermobispora bispora DSM 43833] Length = 144 Score = 59.3 bits (142), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 33/97 (34%), Positives = 56/97 (57%), Gaps = 4/97 (4%) Query: 66 LEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEV 125 LE+ ++ GV+ + ID LIS+ + W+ R+ + +ILRAG E++ VP V Sbjct: 49 LEYTVTLVEGVVRHQDRIDELISTY-AQGWTLDRMPAVDRNILRAGTYEMLWSTDVPENV 107 Query: 126 IISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRS 162 +ISE+V +A + + P F+N +L +R +E+K S Sbjct: 108 VISEWVRLAAELSTDESPHFVNGLL---ARFKELKPS 141 >gi|16273216|ref|NP_439455.1| transcription antitermination protein NusB [Haemophilus influenzae Rd KW20] gi|145629373|ref|ZP_01785171.1| transcription antitermination protein NusB [Haemophilus influenzae 22.1-21] gi|145633222|ref|ZP_01788953.1| transcription antitermination protein NusB [Haemophilus influenzae 3655] gi|145638873|ref|ZP_01794481.1| transcription antitermination protein NusB [Haemophilus influenzae PittII] gi|148827000|ref|YP_001291753.1| transcription antitermination protein NusB [Haemophilus influenzae PittGG] gi|260581349|ref|ZP_05849165.1| transcription antitermination factor NusB [Haemophilus influenzae RdAW] gi|319776247|ref|YP_004138735.1| transcription antitermination protein [Haemophilus influenzae F3047] gi|319897123|ref|YP_004135318.1| transcription antitermination protein [Haemophilus influenzae F3031] gi|329123386|ref|ZP_08251950.1| transcription termination/antitermination factor NusB [Haemophilus aegyptius ATCC 11116] gi|1171874|sp|P45150|NUSB_HAEIN RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|166215691|sp|A5UF14|NUSB_HAEIG RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|1574763|gb|AAC22951.1| N utilization substance protein B (nusB) [Haemophilus influenzae Rd KW20] gi|144978216|gb|EDJ87980.1| transcription antitermination protein NusB [Haemophilus influenzae 22.1-21] gi|144986068|gb|EDJ92658.1| transcription antitermination protein NusB [Haemophilus influenzae 3655] gi|145271845|gb|EDK11754.1| transcription antitermination protein NusB [Haemophilus influenzae PittII] gi|148718242|gb|ABQ99369.1| transcription antitermination protein NusB [Haemophilus influenzae PittGG] gi|260092016|gb|EEW75963.1| transcription antitermination factor NusB [Haemophilus influenzae RdAW] gi|309750850|gb|ADO80834.1| Transcription antitermination protein NusB [Haemophilus influenzae R2866] gi|317432627|emb|CBY80988.1| transcription antitermination protein [Haemophilus influenzae F3031] gi|317450838|emb|CBY87062.1| transcription antitermination protein [Haemophilus influenzae F3047] gi|327470968|gb|EGF16423.1| transcription termination/antitermination factor NusB [Haemophilus aegyptius ATCC 11116] Length = 144 Score = 59.3 bits (142), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 45/148 (30%), Positives = 71/148 (47%), Gaps = 13/148 (8%) Query: 7 KKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDL 66 +K +K R AR VQALY + G + ++ F D ++D VD Sbjct: 4 QKQVKKPSARRRARECTVQALYSWAVSGNTAEQV-----ELAFVLDQDMD------GVDK 52 Query: 67 EWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVI 126 +FR + ++ + +D IS + +F LD I +ILR V EL VP +V+ Sbjct: 53 PYFRKLFRQTIENIETVDFSISPYIDR--AFDELDPIETAILRLAVYELRFELDVPYKVV 110 Query: 127 ISEYVCIAHDFFYGDEPKFINAVLDKVS 154 I+E + +A F + K+IN VLDK++ Sbjct: 111 INEAIEVAKVFGADESHKYINGVLDKIA 138 >gi|91792506|ref|YP_562157.1| transcription antitermination protein NusB [Shewanella denitrificans OS217] gi|119390818|sp|Q12Q42|NUSB_SHEDO RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|91714508|gb|ABE54434.1| NusB antitermination factor [Shewanella denitrificans OS217] Length = 133 Score = 59.3 bits (142), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 45/147 (30%), Positives = 72/147 (48%), Gaps = 14/147 (9%) Query: 10 LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF 69 +K S RR RLA VQA+Y + + ++ E F + +D VD+ +F Sbjct: 1 MKPSERRKARRLA-VQAIYSWQLSKNNVADVEHE-----FITEQNID------GVDVAYF 48 Query: 70 RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISE 129 R ++ GV + + ID L+ L K F + + +I+R EL VP +V I+E Sbjct: 49 RELLAGVASKHEQIDDLLRPHLDRK--FEDVSPVEKAIVRLAGYELTFRKDVPYKVAINE 106 Query: 130 YVCIAHDFFYGDEPKFINAVLDKVSRK 156 + +A F D KF+N +LDK+ R+ Sbjct: 107 AIELAKAFGADDSHKFVNGLLDKLVRR 133 >gi|257055582|ref|YP_003133414.1| transcription antitermination factor NusB [Saccharomonospora viridis DSM 43017] gi|256585454|gb|ACU96587.1| transcription antitermination factor NusB [Saccharomonospora viridis DSM 43017] Length = 153 Score = 59.3 bits (142), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 41/155 (26%), Positives = 73/155 (47%), Gaps = 18/155 (11%) Query: 5 DNKKDLKLSHRRGI-----ARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVES 59 +N+ + RRG +R AV+ LY+ + ++SE R + DV+ Sbjct: 2 NNESRASRTARRGTFSRRASRQRAVELLYEAALRKTDPATLMSE----RLGSP---DVDP 54 Query: 60 VYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECH 119 + ++ ++ GV + ++ ID L++ + WS R+ + ++LR G+ EL+ Sbjct: 55 IS-----DYTITLVEGVSENRERIDELLAEY-AQGWSLERMPPVDLAVLRVGLYELLWLD 108 Query: 120 SVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVS 154 VP V I E V IA D P+F+N VL ++ Sbjct: 109 DVPDPVAIDEAVGIAKQLSTDDSPRFVNGVLGRIG 143 >gi|119472104|ref|ZP_01614335.1| transcription termination factor [Alteromonadales bacterium TW-7] gi|119445124|gb|EAW26417.1| transcription termination factor [Alteromonadales bacterium TW-7] Length = 136 Score = 59.3 bits (142), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 45/144 (31%), Positives = 73/144 (50%), Gaps = 14/144 (9%) Query: 10 LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF 69 +K + RR AR+ A+QA+Y + G + +I + ++ +E+ +D+E+F Sbjct: 1 MKPAARRK-ARILALQAVYSWQLSGNAIADI-----------EQQMLIENDVTKIDVEYF 48 Query: 70 RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISE 129 + + GV + +D +S LT F LDM+ +ILR EL VP +V I+E Sbjct: 49 KDLASGVAVNYKLLDESVSPHLTR--PFDDLDMVERAILRLSSYELKFREDVPYKVAINE 106 Query: 130 YVCIAHDFFYGDEPKFINAVLDKV 153 + +A F D KF+N VLDK Sbjct: 107 GIELAKIFGAEDSHKFVNGVLDKA 130 >gi|229093241|ref|ZP_04224359.1| N utilization substance protein B [Bacillus cereus Rock3-42] gi|228690215|gb|EEL44009.1| N utilization substance protein B [Bacillus cereus Rock3-42] Length = 130 Score = 59.3 bits (142), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 47/142 (33%), Positives = 68/142 (47%), Gaps = 18/142 (12%) Query: 15 RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74 +R AR A+QALYQ+DI G E E +T + E E+ ++ Sbjct: 2 KRRTARERAMQALYQMDITG--------ELEPKVAVENTLDEGEETN-----EFLESLVI 48 Query: 75 GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134 G ++ K+ ID I L +KW R+ ++ SILR V E+ +P V I+E + IA Sbjct: 49 GFVENKEVIDEAIRQNL-KKWKLERISIVDRSILRVAVYEMKYMEEIPHNVTINEAIEIA 107 Query: 135 HDFFYGDEP--KFINAVLDKVS 154 F GDE +FIN VL + Sbjct: 108 KTF--GDEESRRFINGVLSNIK 127 >gi|260582481|ref|ZP_05850272.1| transcription antitermination factor NusB [Haemophilus influenzae NT127] gi|260094461|gb|EEW78358.1| transcription antitermination factor NusB [Haemophilus influenzae NT127] Length = 144 Score = 59.3 bits (142), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 45/148 (30%), Positives = 71/148 (47%), Gaps = 13/148 (8%) Query: 7 KKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDL 66 +K +K R AR VQALY + G + ++ F D ++D VD Sbjct: 4 QKQVKKPSARRRARECTVQALYSWAVSGNTAEQV-----ELAFVLDQDMD------GVDK 52 Query: 67 EWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVI 126 +FR + ++ + +D IS + +F LD I +ILR V EL VP +V+ Sbjct: 53 PYFRKLFRQTVENIETVDFSISPYIDR--AFDELDPIETAILRLAVYELRFELDVPYKVV 110 Query: 127 ISEYVCIAHDFFYGDEPKFINAVLDKVS 154 I+E + +A F + K+IN VLDK++ Sbjct: 111 INEAIEVAKVFGADESHKYINGVLDKIA 138 >gi|209363834|ref|YP_001423988.2| transcription antitermination protein NusB [Coxiella burnetii Dugway 5J108-111] gi|207081767|gb|ABS77377.2| N utilization substance protein B [Coxiella burnetii Dugway 5J108-111] Length = 179 Score = 59.3 bits (142), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 42/151 (27%), Positives = 77/151 (50%), Gaps = 13/151 (8%) Query: 4 QDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLH 63 ++N+++L ++ R AR A+QALYQ +IS++ +DT Sbjct: 35 KNNRRNLMINKTRHNARRYALQALYQWFFCETKPDALISQFMEEHDLSDT---------- 84 Query: 64 VDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPV 123 D+ +F+ ++ G + ID L+++ L K S L+ + S+LR + EL+ VP Sbjct: 85 -DVAYFKEVVTGTIQHVAIIDELMTAHLDRK--ISALNPVELSVLRLSIYELLHRKEVPY 141 Query: 124 EVIISEYVCIAHDFFYGDEPKFINAVLDKVS 154 +V+I E + + +F K++NA+LD +S Sbjct: 142 KVVIDEALELVKEFGAEAGHKYVNAILDVLS 172 >gi|68249964|ref|YP_249076.1| transcription antitermination protein NusB [Haemophilus influenzae 86-028NP] gi|81335612|sp|Q4QKN1|NUSB_HAEI8 RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|68058163|gb|AAX88416.1| N utilization substance protein B [Haemophilus influenzae 86-028NP] Length = 144 Score = 59.3 bits (142), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 45/148 (30%), Positives = 71/148 (47%), Gaps = 13/148 (8%) Query: 7 KKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDL 66 +K +K R AR VQALY + G + ++ F D ++D VD Sbjct: 4 QKQVKKPSARRRARECTVQALYSWAVSGNTAEQV-----ELAFVLDQDMD------GVDK 52 Query: 67 EWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVI 126 +FR + ++ + +D IS + +F LD I +ILR V EL VP +V+ Sbjct: 53 PYFRKLFRQTVENIETVDFSISPYIDR--AFDELDPIETAILRLAVYELCFELDVPYKVV 110 Query: 127 ISEYVCIAHDFFYGDEPKFINAVLDKVS 154 I+E + +A F + K+IN VLDK++ Sbjct: 111 INEAIEVAKVFGADESHKYINGVLDKIA 138 >gi|208779634|ref|ZP_03246979.1| transcription antitermination factor NusB [Francisella novicida FTG] gi|208744595|gb|EDZ90894.1| transcription antitermination factor NusB [Francisella novicida FTG] Length = 141 Score = 59.3 bits (142), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 47/147 (31%), Positives = 70/147 (47%), Gaps = 13/147 (8%) Query: 10 LKLSHR-RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEW 68 +K + R R ARL AVQALYQ I + +E+ +Y Y AD + D + Sbjct: 1 MKTTARARNNARLYAVQALYQKKIADNTFSELKIQY--YADNADRH--------YTDWDL 50 Query: 69 FRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIIS 128 F +I V + ID I ++ + ++L+ + ELIEC P +VII Sbjct: 51 FYRLIDAVKTNQDTIDKYIKENSNN--GVESINYVDYAVLQVAIAELIECFENPYQVIIK 108 Query: 129 EYVCIAHDFFYGDEPKFINAVLDKVSR 155 EYV I + + KFINAVL +++ Sbjct: 109 EYVEICYSMGTEEGYKFINAVLQNLAK 135 >gi|30264257|ref|NP_846634.1| transcription antitermination protein NusB [Bacillus anthracis str. Ames] gi|47529700|ref|YP_021049.1| transcription antitermination protein NusB [Bacillus anthracis str. 'Ames Ancestor'] gi|47569441|ref|ZP_00240122.1| transcription antitermination factor nusB [Bacillus cereus G9241] gi|49187084|ref|YP_030336.1| transcription antitermination protein NusB [Bacillus anthracis str. Sterne] gi|49478572|ref|YP_038243.1| transcription antitermination protein NusB [Bacillus thuringiensis serovar konkukian str. 97-27] gi|52141314|ref|YP_085515.1| transcription antitermination protein NusB [Bacillus cereus E33L] gi|65321567|ref|ZP_00394526.1| COG0781: Transcription termination factor [Bacillus anthracis str. A2012] gi|118479373|ref|YP_896524.1| transcription antitermination protein NusB [Bacillus thuringiensis str. Al Hakam] gi|165873007|ref|ZP_02217629.1| N utilization substance protein B [Bacillus anthracis str. A0488] gi|167634649|ref|ZP_02392969.1| N utilization substance protein B [Bacillus anthracis str. A0442] gi|167638629|ref|ZP_02396905.1| N utilization substance protein B [Bacillus anthracis str. A0193] gi|170687525|ref|ZP_02878742.1| N utilization substance protein B [Bacillus anthracis str. A0465] gi|170709044|ref|ZP_02899474.1| N utilization substance protein B [Bacillus anthracis str. A0389] gi|177654829|ref|ZP_02936586.1| N utilization substance protein B [Bacillus anthracis str. A0174] gi|190565849|ref|ZP_03018768.1| N utilization substance protein B [Bacillus anthracis Tsiankovskii-I] gi|196034887|ref|ZP_03102294.1| N utilization substance protein B [Bacillus cereus W] gi|196041593|ref|ZP_03108885.1| N utilization substance protein B [Bacillus cereus NVH0597-99] gi|196046394|ref|ZP_03113620.1| N utilization substance protein B [Bacillus cereus 03BB108] gi|206976312|ref|ZP_03237220.1| N utilization substance protein B [Bacillus cereus H3081.97] gi|217961672|ref|YP_002340242.1| transcription antitermination protein NusB [Bacillus cereus AH187] gi|218905318|ref|YP_002453152.1| N utilization substance protein B [Bacillus cereus AH820] gi|222097628|ref|YP_002531685.1| transcription antitermination protein nusb [Bacillus cereus Q1] gi|225866164|ref|YP_002751542.1| N utilization substance protein B [Bacillus cereus 03BB102] gi|227816958|ref|YP_002816967.1| N utilization substance protein B [Bacillus anthracis str. CDC 684] gi|228916818|ref|ZP_04080383.1| N utilization substance protein B [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228929228|ref|ZP_04092255.1| N utilization substance protein B [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228935505|ref|ZP_04098323.1| N utilization substance protein B [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228947899|ref|ZP_04110186.1| N utilization substance protein B [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|229031831|ref|ZP_04187819.1| N utilization substance protein B [Bacillus cereus AH1271] gi|229123702|ref|ZP_04252897.1| N utilization substance protein B [Bacillus cereus 95/8201] gi|229604290|ref|YP_002868476.1| N utilization substance protein B [Bacillus anthracis str. A0248] gi|254683946|ref|ZP_05147806.1| transcription antitermination protein NusB [Bacillus anthracis str. CNEVA-9066] gi|254721781|ref|ZP_05183570.1| transcription antitermination protein NusB [Bacillus anthracis str. A1055] gi|254736294|ref|ZP_05194000.1| transcription antitermination protein NusB [Bacillus anthracis str. Western North America USA6153] gi|254741332|ref|ZP_05199019.1| transcription antitermination protein NusB [Bacillus anthracis str. Kruger B] gi|254754034|ref|ZP_05206069.1| transcription antitermination protein NusB [Bacillus anthracis str. Vollum] gi|254757905|ref|ZP_05209932.1| transcription antitermination protein NusB [Bacillus anthracis str. Australia 94] gi|301055675|ref|YP_003793886.1| transcription antitermination protein NusB [Bacillus anthracis CI] gi|39931872|sp|Q81M49|NUSB_BACAN RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|81613591|sp|Q6HDY3|NUSB_BACHK RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|81686283|sp|Q635A2|NUSB_BACCZ RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|166215664|sp|A0RIH4|NUSB_BACAH RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|226737438|sp|B7JM33|NUSB_BACC0 RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|226738895|sp|B7HNU5|NUSB_BACC7 RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|254772611|sp|C3P7W1|NUSB_BACAA RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|254772612|sp|C3LJV6|NUSB_BACAC RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|254772613|sp|C1ERQ5|NUSB_BACC3 RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|254772614|sp|B9IXH5|NUSB_BACCQ RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|30258902|gb|AAP28120.1| N utilization substance protein B [Bacillus anthracis str. Ames] gi|47504848|gb|AAT33524.1| N utilization substance protein B [Bacillus anthracis str. 'Ames Ancestor'] gi|47553856|gb|EAL12226.1| transcription antitermination factor nusB [Bacillus cereus G9241] gi|49181011|gb|AAT56387.1| N utilization substance protein B [Bacillus anthracis str. Sterne] gi|49330128|gb|AAT60774.1| N utilization substance protein B [Bacillus thuringiensis serovar konkukian str. 97-27] gi|51974783|gb|AAU16333.1| N utilization substance protein B [Bacillus cereus E33L] gi|118418598|gb|ABK87017.1| N utilization substance protein B [Bacillus thuringiensis str. Al Hakam] gi|164711290|gb|EDR16845.1| N utilization substance protein B [Bacillus anthracis str. A0488] gi|167513477|gb|EDR88847.1| N utilization substance protein B [Bacillus anthracis str. A0193] gi|167530101|gb|EDR92836.1| N utilization substance protein B [Bacillus anthracis str. A0442] gi|170126071|gb|EDS94968.1| N utilization substance protein B [Bacillus anthracis str. A0389] gi|170668720|gb|EDT19466.1| N utilization substance protein B [Bacillus anthracis str. A0465] gi|172080490|gb|EDT65576.1| N utilization substance protein B [Bacillus anthracis str. A0174] gi|190562768|gb|EDV16734.1| N utilization substance protein B [Bacillus anthracis Tsiankovskii-I] gi|195992426|gb|EDX56387.1| N utilization substance protein B [Bacillus cereus W] gi|196022864|gb|EDX61545.1| N utilization substance protein B [Bacillus cereus 03BB108] gi|196027581|gb|EDX66196.1| N utilization substance protein B [Bacillus cereus NVH0597-99] gi|206745508|gb|EDZ56907.1| N utilization substance protein B [Bacillus cereus H3081.97] gi|217067907|gb|ACJ82157.1| N utilization substance protein B [Bacillus cereus AH187] gi|218539371|gb|ACK91769.1| N utilization substance protein B [Bacillus cereus AH820] gi|221241686|gb|ACM14396.1| N utilization substance protein B [Bacillus cereus Q1] gi|225785990|gb|ACO26207.1| N utilization substance protein B [Bacillus cereus 03BB102] gi|227003150|gb|ACP12893.1| N utilization substance protein B [Bacillus anthracis str. CDC 684] gi|228659837|gb|EEL15482.1| N utilization substance protein B [Bacillus cereus 95/8201] gi|228729449|gb|EEL80438.1| N utilization substance protein B [Bacillus cereus AH1271] gi|228811886|gb|EEM58220.1| N utilization substance protein B [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228824257|gb|EEM70071.1| N utilization substance protein B [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228830518|gb|EEM76128.1| N utilization substance protein B [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228843005|gb|EEM88088.1| N utilization substance protein B [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|229268698|gb|ACQ50335.1| N utilization substance protein B [Bacillus anthracis str. A0248] gi|300377844|gb|ADK06748.1| transcription antitermination protein NusB [Bacillus cereus biovar anthracis str. CI] gi|324328096|gb|ADY23356.1| transcription antitermination protein NusB [Bacillus thuringiensis serovar finitimus YBT-020] Length = 130 Score = 59.3 bits (142), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 47/142 (33%), Positives = 68/142 (47%), Gaps = 18/142 (12%) Query: 15 RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74 +R AR A+QALYQ+DI G E E +T + E E+ ++ Sbjct: 2 KRRTARERAMQALYQMDITG--------ELEPKVAVENTLDEGEETN-----EFLESLVV 48 Query: 75 GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134 G ++ K+ ID I L +KW R+ ++ SILR V E+ +P V I+E + IA Sbjct: 49 GFVENKEVIDEAIRQNL-KKWKLERISIVDRSILRVAVYEMKYMEEIPHNVTINEAIEIA 107 Query: 135 HDFFYGDEP--KFINAVLDKVS 154 F GDE +FIN VL + Sbjct: 108 KTF--GDEESRRFINGVLSNIK 127 >gi|299537762|ref|ZP_07051051.1| N utilization substance protein B-like protein [Lysinibacillus fusiformis ZC1] gi|298726741|gb|EFI67327.1| N utilization substance protein B-like protein [Lysinibacillus fusiformis ZC1] Length = 127 Score = 58.9 bits (141), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 41/147 (27%), Positives = 68/147 (46%), Gaps = 25/147 (17%) Query: 15 RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLE----WFR 70 +R AR A+Q L+Q+D +T+L VE H+ + ++ Sbjct: 2 KRHEAREKALQVLFQLD--------------------NTDLTVEEAMGHIKGQPTNAFYE 41 Query: 71 VIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEY 130 I++G + + ID + L EKWS +RL I ++LR V EL+ P V+++E Sbjct: 42 KIVNGTAEHLEEIDATLEQHL-EKWSLARLPKIERTVLRLAVYELLYMPETPKRVVLNEA 100 Query: 131 VCIAHDFFYGDEPKFINAVLDKVSRKE 157 + + F KF+N VL K + +E Sbjct: 101 IELCKTFGDDSSSKFVNGVLSKFTEQE 127 >gi|222099929|ref|YP_002534497.1| N utilization substance protein B like protein [Thermotoga neapolitana DSM 4359] gi|221572319|gb|ACM23131.1| N utilization substance protein B like protein [Thermotoga neapolitana DSM 4359] Length = 135 Score = 58.9 bits (141), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 31/87 (35%), Positives = 51/87 (58%), Gaps = 1/87 (1%) Query: 70 RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISE 129 R I + + Q ID LIS L E+W+ RL + +ILR G EL+ +P+EV I+E Sbjct: 41 RRYIRNIKEHLQTIDDLISRYL-ERWTIDRLSAVDRNILRLGTYELLYEKDIPIEVTINE 99 Query: 130 YVCIAHDFFYGDEPKFINAVLDKVSRK 156 + IA + + KF+N +LD+++++ Sbjct: 100 AIEIAKRYGTENSGKFVNGILDRIAKE 126 >gi|15827185|ref|NP_301448.1| transcription antitermination protein NusB [Mycobacterium leprae TN] gi|221229663|ref|YP_002503079.1| transcription antitermination protein NusB [Mycobacterium leprae Br4923] gi|18202776|sp|Q9CCR9|NUSB_MYCLE RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|254772649|sp|B8ZUK7|NUSB_MYCLB RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|13092733|emb|CAC30031.1| putative transcription termination protein [Mycobacterium leprae] gi|219932770|emb|CAR70616.1| putative transcription termination protein [Mycobacterium leprae Br4923] Length = 190 Score = 58.9 bits (141), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 44/135 (32%), Positives = 64/135 (47%), Gaps = 9/135 (6%) Query: 19 ARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMD 78 AR AV L++ + S EII E A ++LDV ++ + V+ GV + Sbjct: 11 ARKRAVDLLFEAEARDLSPLEII---EVRSALAKSKLDVAPLH-----PYTVVVAQGVSE 62 Query: 79 RKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFF 138 ID LI S L + W RL + +ILR + EL+ VP V + E V +A + Sbjct: 63 HTARIDELIISHL-QGWKLDRLPAVDRAILRVSIWELLYADDVPEPVAVDEAVELAKELS 121 Query: 139 YGDEPKFINAVLDKV 153 D P F+N +L KV Sbjct: 122 TDDSPGFVNGLLGKV 136 >gi|251796318|ref|YP_003011049.1| NusB antitermination factor [Paenibacillus sp. JDR-2] gi|247543944|gb|ACT00963.1| NusB antitermination factor [Paenibacillus sp. JDR-2] Length = 153 Score = 58.9 bits (141), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 42/154 (27%), Positives = 77/154 (50%), Gaps = 6/154 (3%) Query: 15 RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDL--EWFRVI 72 +R +AR AV +LYQ+++ + E + + A +E ++E+ ++ D + R + Sbjct: 2 KRRLAREIAVSSLYQLEMNEVTPMEAV---DMLMEEARSENEIEAEFVENDQTDNYVREL 58 Query: 73 IHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVC 132 ++GV + K ID + LT W RL + ILR E+ + VP + I+E + Sbjct: 59 VNGVAENKAAIDERLQHYLT-GWQVDRLSRVDRQILRLAYFEIAYRNDVPPKAAINEAIE 117 Query: 133 IAHDFFYGDEPKFINAVLDKVSRKEEIKRSGCVS 166 +A F + KF+N VL K+ ++ E + + S Sbjct: 118 LAKHFGTEESGKFVNGVLGKLLKEREGETANSES 151 >gi|317505974|ref|ZP_07963806.1| transcription antitermination factor NusB [Segniliparus rugosus ATCC BAA-974] gi|316255750|gb|EFV14988.1| transcription antitermination factor NusB [Segniliparus rugosus ATCC BAA-974] Length = 166 Score = 58.9 bits (141), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 43/143 (30%), Positives = 67/143 (46%), Gaps = 8/143 (5%) Query: 11 KLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFR 70 K + R ARL AV+ L++ + E+ +E A+ D+ + L + Sbjct: 11 KRAGSRRKARLRAVELLFEAEARDLDPAELAAER-----SAELVKDLSAPQLT---PYAL 62 Query: 71 VIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEY 130 V++ GV D + +D IS L WS +RL + SILR V EL+ VP V + E Sbjct: 63 VVLEGVRDHLEVVDQTISDHLRGDWSLNRLPAVDRSILRVAVWELLFAPEVPTAVAVDEA 122 Query: 131 VCIAHDFFYGDEPKFINAVLDKV 153 + +A + P FIN VL ++ Sbjct: 123 LELAKGLSTDESPGFINGVLGRL 145 >gi|257456352|ref|ZP_05621549.1| transcription antitermination factor NusB [Treponema vincentii ATCC 35580] gi|257446438|gb|EEV21484.1| transcription antitermination factor NusB [Treponema vincentii ATCC 35580] Length = 147 Score = 58.9 bits (141), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 46/147 (31%), Positives = 71/147 (48%), Gaps = 11/147 (7%) Query: 10 LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF 69 + + RRG R+ A QALY D S +++ R EL E D + Sbjct: 1 MAIGRRRG--RILAFQALYAWDAGSLSPDDLLPFPWVER--TGKELHDE------DFLFS 50 Query: 70 RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISE 129 +++ G ++ ID LI+ L E W F+RL ++ +ILR G L+ ++I+E Sbjct: 51 QLLFLGAVEHIDEIDGLIAKNL-ENWDFNRLKLVDKAILRLGTYSLLFQQDTDPRIVINE 109 Query: 130 YVCIAHDFFYGDEPKFINAVLDKVSRK 156 V IA + D KF+NAVLD + R+ Sbjct: 110 AVTIARIYGTDDSFKFVNAVLDSIKRE 136 >gi|120403637|ref|YP_953466.1| transcription antitermination protein NusB [Mycobacterium vanbaalenii PYR-1] gi|166215702|sp|A1T8G0|NUSB_MYCVP RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|119956455|gb|ABM13460.1| NusB antitermination factor [Mycobacterium vanbaalenii PYR-1] Length = 163 Score = 58.9 bits (141), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 46/147 (31%), Positives = 65/147 (44%), Gaps = 10/147 (6%) Query: 8 KDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLE 67 D K R AR AV L++ + G + E+ E A+ D + L Sbjct: 2 PDRKGDRGRHQARKRAVDLLFEAEARGITAAEV---AEARNALAEKRTDDIAT-----LN 53 Query: 68 WFRVII-HGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVI 126 + V + GV HID LIS+ L + W+ RL + +ILR V EL+ VP V Sbjct: 54 PYTVTVAQGVTAHAAHIDDLISAHL-QGWTLDRLPAVDRAILRVAVWELLHAEDVPEPVA 112 Query: 127 ISEYVCIAHDFFYGDEPKFINAVLDKV 153 + E V +A D P F+N VL +V Sbjct: 113 VDEAVELAKQLSTDDSPGFVNGVLGQV 139 >gi|254492114|ref|ZP_05105289.1| transcription antitermination factor NusB [Methylophaga thiooxidans DMS010] gi|224462666|gb|EEF78940.1| transcription antitermination factor NusB [Methylophaga thiooxydans DMS010] Length = 150 Score = 58.9 bits (141), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 41/139 (29%), Positives = 67/139 (48%), Gaps = 13/139 (9%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 R AR AAVQALYQ + + + E+ T + AD +D ++F +I G Sbjct: 7 RTKARRAAVQALYQALVNNETPQKAGLEFVTAEY-ADK----------IDRKYFTTLIEG 55 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135 + +Q ID +S + + +D + S+LR V E + +P V+++E V +A Sbjct: 56 TIKYQQAIDAELSEAVDR--DLNAVDPVEISVLRLAVFEFMHLPEIPYRVVLNEAVELAK 113 Query: 136 DFFYGDEPKFINAVLDKVS 154 F K++N VLDK+ Sbjct: 114 SFGGEQGHKYVNGVLDKMG 132 >gi|294141965|ref|YP_003557943.1| N utilization substance protein B [Shewanella violacea DSS12] gi|293328434|dbj|BAJ03165.1| N utilization substance protein B [Shewanella violacea DSS12] Length = 134 Score = 58.9 bits (141), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 48/148 (32%), Positives = 73/148 (49%), Gaps = 15/148 (10%) Query: 10 LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF 69 +K S RR RLA VQA+Y + G + ++ E+E F + ++D +D+ +F Sbjct: 1 MKPSERRKARRLA-VQAIYSWQLSGNNIADV--EHE---FLTEQKID------GIDVAYF 48 Query: 70 RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISE 129 R + G + ID LI + F+ + I +ILR EL VP +V I+E Sbjct: 49 RELFTGTATKHAQIDELIIPHVER--PFNEVSPIEKAILRMATYELTFRKDVPYKVAINE 106 Query: 130 YVCIAHDFFYGDEPKFINAVLDK-VSRK 156 + +A F D KF+N +LDK V RK Sbjct: 107 AIELAKTFGAEDGHKFVNGILDKIVGRK 134 >gi|187251633|ref|YP_001876115.1| NusB antitermination factor [Elusimicrobium minutum Pei191] gi|254772640|sp|B2KE32|NUSB_ELUMP RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|186971793|gb|ACC98778.1| NusB anti-termination factor [Elusimicrobium minutum Pei191] Length = 140 Score = 58.9 bits (141), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 41/146 (28%), Positives = 72/146 (49%), Gaps = 13/146 (8%) Query: 12 LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71 + +RR +AR A+Q LY D G + + I+EY+ D + E+ Sbjct: 1 MGNRR-LAREHALQTLYYADT-GKTQGKDINEYKE---------DFKDSLDAAGFEFCSG 49 Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLE-LIECHSVPVEVIISEY 130 II G ++ + +D +IS + WS +R+ ++ SILR E L + PV +I E Sbjct: 50 IIDGALEHQAELDKIIS-AYAKNWSLNRMSVVDRSILRMAAYEMLFSPENTPVAAVIDEA 108 Query: 131 VCIAHDFFYGDEPKFINAVLDKVSRK 156 + +A F + +FIN +LD++ ++ Sbjct: 109 IELAKKFSTENSSRFINGLLDQIKKE 134 >gi|307546178|ref|YP_003898657.1| transcription antitermination protein NusB [Halomonas elongata DSM 2581] gi|307218202|emb|CBV43472.1| transcription antitermination protein NusB [Halomonas elongata DSM 2581] Length = 166 Score = 58.9 bits (141), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 44/143 (30%), Positives = 69/143 (48%), Gaps = 8/143 (5%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHV----DLEWFRV 71 R AR AVQ LYQ ++ G S + +E+ AD +L+ + V DL F Sbjct: 15 RRAARELAVQGLYQWEMTGKSVATVEAEFRGQ--VADEDLEDHENWHKVMELADLALFHE 72 Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131 ++ GV + ID ++ L + LD I +ILR G EL VP +I+E V Sbjct: 73 LLSGVAQHCEKIDEQLAPVLDRR--LEDLDAIELAILRLGTYELAYRLEVPYRAVINEGV 130 Query: 132 CIAHDFFYGDEPKFINAVLDKVS 154 +A F + +++N +LDK++ Sbjct: 131 ELAKSFGATEGHRYVNGILDKLA 153 >gi|325981170|ref|YP_004293572.1| NusB antitermination factor [Nitrosomonas sp. AL212] gi|325530689|gb|ADZ25410.1| NusB antitermination factor [Nitrosomonas sp. AL212] Length = 166 Score = 58.9 bits (141), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 41/148 (27%), Positives = 67/148 (45%), Gaps = 13/148 (8%) Query: 7 KKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDL 66 KK K RR IAR +Q +YQ G +T I + +L + HVD Sbjct: 14 KKAEKYKSRRRIAREFVLQGIYQWRTAGGTTNFI-----------EQQLRESEEFRHVDE 62 Query: 67 EWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVI 126 + F ++ G + + ++ +I CL S L + +IL ELI +P I Sbjct: 63 KHFTHVLQGALQQVDELEKIIRPCLDR--SLDELSPVEFAILLLSTFELIHHPEIPYRAI 120 Query: 127 ISEYVCIAHDFFYGDEPKFINAVLDKVS 154 ++E + +A + D K++N VLDK++ Sbjct: 121 LNEAIELARTYGGSDGHKYVNGVLDKLA 148 >gi|332678675|gb|AEE87804.1| Transcription termination protein NusB [Francisella cf. novicida Fx1] Length = 141 Score = 58.9 bits (141), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 47/147 (31%), Positives = 71/147 (48%), Gaps = 13/147 (8%) Query: 10 LKLSHR-RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEW 68 +K + R R ARL AVQALYQ I + +E+ +Y Y AD + D + Sbjct: 1 MKTTARARNNARLYAVQALYQKKIADNTFSELKVQY--YADNADRH--------YTDWDL 50 Query: 69 FRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIIS 128 F +I V + ID I + ++ + ++L+ + ELIEC P +VII Sbjct: 51 FYRLIDAVKTNQDTIDKYIKENSSN--GVESINYVDYAVLQVAIAELIECLENPYQVIIK 108 Query: 129 EYVCIAHDFFYGDEPKFINAVLDKVSR 155 EYV I + + KFINAVL +++ Sbjct: 109 EYVEICYSMGTEEGYKFINAVLQNLAK 135 >gi|297155776|gb|ADI05488.1| transcription antitermination protein NusB [Streptomyces bingchenggensis BCW-1] Length = 150 Score = 58.9 bits (141), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 40/155 (25%), Positives = 67/155 (43%), Gaps = 9/155 (5%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 R AR A Q L++ D G S +++++ + D + V + ++ G Sbjct: 4 RNKARKRAFQILFEADQRGTSVQTVLADWIRHARTDDRQPPVSEYTMQ--------LVEG 55 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135 ID LIS+ W+ R+ ++ +ILR G EL+ P V+I E V +A Sbjct: 56 YAQYTARIDELISTYAV-GWTLDRMPVVDRNILRLGAYELVWEDETPDAVVIDEAVQLAK 114 Query: 136 DFFYGDEPKFINAVLDKVSRKEEIKRSGCVSAITQ 170 +F D P F+N +L + + R G T+ Sbjct: 115 EFSTDDSPAFVNGLLGRFKELKPSLRRGEQQPTTE 149 >gi|15672676|ref|NP_266850.1| hypothetical protein L92686 [Lactococcus lactis subsp. lactis Il1403] gi|12723603|gb|AAK04792.1|AE006302_10 transcription termination protein NusB [Lactococcus lactis subsp. lactis Il1403] Length = 323 Score = 58.9 bits (141), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 30/84 (35%), Positives = 51/84 (60%), Gaps = 1/84 (1%) Query: 67 EWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVI 126 E+F ++ GV+D+K+ ++ IS LT+ WSFSRL ++ +IL+ E++ + P V Sbjct: 236 EYFTQLVDGVLDKKEDLEANISKYLTKTWSFSRLTLVEQAILQVSSYEILYTET-PDVVA 294 Query: 127 ISEYVCIAHDFFYGDEPKFINAVL 150 ++E V ++ DF +FIN VL Sbjct: 295 VNEAVELSKDFSDEKSSRFINGVL 318 >gi|326406239|gb|ADZ63310.1| transcription antitermination factor [Lactococcus lactis subsp. lactis CV56] Length = 323 Score = 58.9 bits (141), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 30/84 (35%), Positives = 51/84 (60%), Gaps = 1/84 (1%) Query: 67 EWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVI 126 E+F ++ GV+D+K+ ++ IS LT+ WSFSRL ++ +IL+ E++ + P V Sbjct: 236 EYFTQLVDGVLDKKEDLEANISKYLTKTWSFSRLTLVEQAILQVSSYEILYTET-PDVVA 294 Query: 127 ISEYVCIAHDFFYGDEPKFINAVL 150 ++E V ++ DF +FIN VL Sbjct: 295 VNEAVELSKDFSDEKSSRFINGVL 318 >gi|332992370|gb|AEF02425.1| transcription antitermination protein NusB [Alteromonas sp. SN2] Length = 140 Score = 58.9 bits (141), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 35/92 (38%), Positives = 46/92 (50%), Gaps = 2/92 (2%) Query: 64 VDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPV 123 VD+ +F+ ++ GV H+D I L LD I +ILR LEL E VP Sbjct: 43 VDMAYFQALLRGVAHSASHLDTTIKPYLGR--LPEELDAIEKAILRIATLELTERKDVPY 100 Query: 124 EVIISEYVCIAHDFFYGDEPKFINAVLDKVSR 155 VII+E + +A F + KFIN LDK R Sbjct: 101 RVIINEAIELAKSFGAEESHKFINGALDKAVR 132 >gi|326382154|ref|ZP_08203846.1| transcription antitermination protein NusB [Gordonia neofelifaecis NRRL B-59395] gi|326198884|gb|EGD56066.1| transcription antitermination protein NusB [Gordonia neofelifaecis NRRL B-59395] Length = 149 Score = 58.9 bits (141), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 42/145 (28%), Positives = 70/145 (48%), Gaps = 9/145 (6%) Query: 10 LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF 69 +K R AR AV L++ + T++I+E D+ V ++Y ++ Sbjct: 1 MKKPGTRHKARKRAVDLLFEAEAKNVKATQLIAERREIYPSDDS---VGTMY-----DYT 52 Query: 70 RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISE 129 ++ GV +D +I S L E W RL + +ILR V EL+ + V ++V++ E Sbjct: 53 VRVVEGVTVDASQVDAVIESHL-ENWKLHRLPAVDRAILRLAVWELLYANDVDIDVVLDE 111 Query: 130 YVCIAHDFFYGDEPKFINAVLDKVS 154 V +A + D P F+N VL KV+ Sbjct: 112 AVELAKELSTDDSPSFVNGVLGKVA 136 >gi|187917985|ref|YP_001883548.1| transcription antitermination protein NusB [Borrelia hermsii DAH] gi|119860833|gb|AAX16628.1| N utilization substance protein B [Borrelia hermsii DAH] Length = 146 Score = 58.9 bits (141), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 48/151 (31%), Positives = 75/151 (49%), Gaps = 15/151 (9%) Query: 10 LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF 69 + L H+ AR+ A Q +Y ID+ C + I Y+ + L+ V L DL+ F Sbjct: 3 MNLRHK---ARVLAFQKIYSIDV-NCKAKDNI--YDIF------GLEDHGVDLEEDLKLF 50 Query: 70 -RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLEL-IECHSVPVEVII 127 V+++G D + ID LIS ++ W R+D + +ILR V L + VP VII Sbjct: 51 YSVLVNGTCDNLESIDKLISD-ISLNWRLDRMDKVDLAILRVSVYSLKFQNLDVPKRVII 109 Query: 128 SEYVCIAHDFFYGDEPKFINAVLDKVSRKEE 158 E + IA + + KF+N +LD + + E Sbjct: 110 DEAILIAKKYGSKNSYKFVNGILDALLKDME 140 >gi|145636230|ref|ZP_01791900.1| transcription antitermination protein NusB [Haemophilus influenzae PittHH] gi|145641684|ref|ZP_01797261.1| transcription antitermination protein NusB [Haemophilus influenzae R3021] gi|145270752|gb|EDK10685.1| transcription antitermination protein NusB [Haemophilus influenzae PittHH] gi|145273731|gb|EDK13600.1| transcription antitermination protein NusB [Haemophilus influenzae 22.4-21] Length = 144 Score = 58.9 bits (141), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 45/148 (30%), Positives = 71/148 (47%), Gaps = 13/148 (8%) Query: 7 KKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDL 66 +K +K R AR VQALY + G + ++ F D ++D VD Sbjct: 4 QKQVKKPSARRRARECTVQALYSWAVSGNTAEQV-----ELAFVLDQDMD------GVDK 52 Query: 67 EWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVI 126 +FR + ++ + +D IS + +F LD I +ILR V EL VP +V+ Sbjct: 53 PYFRKLFRQTIENIETVDFSISPYIDR--TFDELDPIETAILRLAVYELHFELDVPYKVV 110 Query: 127 ISEYVCIAHDFFYGDEPKFINAVLDKVS 154 I+E + +A F + K+IN VLDK++ Sbjct: 111 INEAIEVAKVFGADESHKYINGVLDKIA 138 >gi|39932003|sp|Q9CHN4|NUSB_LACLA RecName: Full=N utilization substance protein B homolog; Short=Protein nusB Length = 192 Score = 58.9 bits (141), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 30/84 (35%), Positives = 51/84 (60%), Gaps = 1/84 (1%) Query: 67 EWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVI 126 E+F ++ GV+D+K+ ++ IS LT+ WSFSRL ++ +IL+ E++ + P V Sbjct: 105 EYFTQLVDGVLDKKEDLEANISKYLTKTWSFSRLTLVEQAILQVSSYEILYTET-PDVVA 163 Query: 127 ISEYVCIAHDFFYGDEPKFINAVL 150 ++E V ++ DF +FIN VL Sbjct: 164 VNEAVELSKDFSDEKSSRFINGVL 187 >gi|116618710|ref|YP_819081.1| NusB antitermination factor [Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293] gi|227432118|ref|ZP_03914130.1| transcription antitermination protein NusB [Leuconostoc mesenteroides subsp. cremoris ATCC 19254] gi|116097557|gb|ABJ62708.1| NusB antitermination factor [Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293] gi|227352145|gb|EEJ42359.1| transcription antitermination protein NusB [Leuconostoc mesenteroides subsp. cremoris ATCC 19254] Length = 137 Score = 58.5 bits (140), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 30/92 (32%), Positives = 50/92 (54%) Query: 67 EWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVI 126 ++ +++GV+ K +D ISS L E W+ +R++ ILR + EL + P +V Sbjct: 44 DYLPRLVNGVLGSKADLDEKISSHLAEGWAINRINKADLVILRLAIYELTAVEATPYKVA 103 Query: 127 ISEYVCIAHDFFYGDEPKFINAVLDKVSRKEE 158 I E + +A F D+ KF+N VL +R E+ Sbjct: 104 IDEAIELAKTFADEDDRKFVNGVLKHFARDEK 135 >gi|183601040|ref|ZP_02962533.1| hypothetical protein PROSTU_04661 [Providencia stuartii ATCC 25827] gi|188019378|gb|EDU57418.1| hypothetical protein PROSTU_04661 [Providencia stuartii ATCC 25827] Length = 138 Score = 58.5 bits (140), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 39/132 (29%), Positives = 67/132 (50%), Gaps = 13/132 (9%) Query: 23 AVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQH 82 AVQA+Y + G + +++ Y F A+ ++ VD+ +FR ++ GV + Sbjct: 13 AVQAIYSWQLSGNNVSDV-----EYEFIAEQDMS------DVDVIYFRELLSGVANNAAK 61 Query: 83 IDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDE 142 +D L++ L+ + L + +ILR + EL VP +V I+E + +A F D Sbjct: 62 LDQLMAPFLSRQ--LEELGQVEKAILRVAMYELSYREDVPYKVAINEGIELAKVFGAEDS 119 Query: 143 PKFINAVLDKVS 154 KF+N VLDK + Sbjct: 120 HKFVNGVLDKAA 131 >gi|254373311|ref|ZP_04988799.1| N utilisation substance protein B [Francisella tularensis subsp. novicida GA99-3549] gi|254374776|ref|ZP_04990257.1| N utilization substance protein B [Francisella novicida GA99-3548] gi|151571037|gb|EDN36691.1| N utilisation substance protein B [Francisella novicida GA99-3549] gi|151572495|gb|EDN38149.1| N utilization substance protein B [Francisella novicida GA99-3548] Length = 141 Score = 58.5 bits (140), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 47/147 (31%), Positives = 70/147 (47%), Gaps = 13/147 (8%) Query: 10 LKLSHR-RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEW 68 +K + R R ARL AVQALYQ I + +E+ +Y Y AD + D + Sbjct: 1 MKTTARARNNARLYAVQALYQKKIADNTFSELKVQY--YADNADRH--------YTDWDL 50 Query: 69 FRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIIS 128 F +I V + ID I ++ + ++L+ + ELIEC P +VII Sbjct: 51 FYRLIDAVKTNQDTIDKYIKENSNN--GVESINYVDYAVLQVAIAELIECLENPYQVIIK 108 Query: 129 EYVCIAHDFFYGDEPKFINAVLDKVSR 155 EYV I + + KFINAVL +++ Sbjct: 109 EYVEICYSMGTEEGYKFINAVLQNLAK 135 >gi|253576317|ref|ZP_04853647.1| transcription antitermination factor NusB [Paenibacillus sp. oral taxon 786 str. D14] gi|251844210|gb|EES72228.1| transcription antitermination factor NusB [Paenibacillus sp. oral taxon 786 str. D14] Length = 149 Score = 58.5 bits (140), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 40/139 (28%), Positives = 69/139 (49%), Gaps = 2/139 (1%) Query: 15 RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74 +R +AR AVQ++YQ+++ E ++ T + E +VE + + +++ Sbjct: 2 KRRLAREIAVQSMYQMEMNEVDANEAVTMLLT-EAMEENEGEVELSDVDATRAFALELVN 60 Query: 75 GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134 G RK ID L+ L + W SRL + +LR E+I VP +V ++E + +A Sbjct: 61 GTWSRKDAIDSLLEDYL-KGWQISRLSKVDRQVLRLATYEMIFRDDVPGKVAVNEAIELA 119 Query: 135 HDFFYGDEPKFINAVLDKV 153 F + KF+N VL K+ Sbjct: 120 KHFGSPESGKFVNGVLGKM 138 >gi|283782240|ref|YP_003372995.1| NusB antitermination factor [Pirellula staleyi DSM 6068] gi|283440693|gb|ADB19135.1| NusB antitermination factor [Pirellula staleyi DSM 6068] Length = 136 Score = 58.5 bits (140), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 37/143 (25%), Positives = 70/143 (48%), Gaps = 12/143 (8%) Query: 15 RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74 RR AR +Q LY+ D+ + + + R D EL +++ R ++ Sbjct: 3 RRSRAREVVLQILYEDDLNPDRSIAVSDVFLRRRLGDDVEL----------VDFARDLLR 52 Query: 75 GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134 GV R++ +D+L+ + W+ R+ + ++LR G E++ + P V I+E V +A Sbjct: 53 GVRGRRKELDVLLQQK-ADHWTLDRMAVTDRNVLRLGAYEILHTQT-PQRVAINEAVELA 110 Query: 135 HDFFYGDEPKFINAVLDKVSRKE 157 F P+F+N +LD+ +K+ Sbjct: 111 KRFGARQSPQFVNGILDRFLQKK 133 >gi|269958899|ref|YP_003328688.1| N utilization substance protein B [Anaplasma centrale str. Israel] gi|269848730|gb|ACZ49374.1| N utilization substance protein B [Anaplasma centrale str. Israel] Length = 173 Score = 58.5 bits (140), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 46/153 (30%), Positives = 76/153 (49%), Gaps = 8/153 (5%) Query: 1 MTIQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTEL-DVES 59 M + +L + AR AVQ Y + ST ++ E C E+ DV Sbjct: 1 MGVGSESDNLPWYSGKTSARFLAVQGAYSMMFSSYSTEDLDELLE--HLC---EMRDVLG 55 Query: 60 VYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECH 119 + VD I+ ++ + ID +IS +++KW+ R+++I S++RAG+ EL+ C Sbjct: 56 LG-RVDKRLLTKILGSMLSKYSEIDAIISEHISKKWTMDRINLISLSVMRAGICELL-CF 113 Query: 120 SVPVEVIISEYVCIAHDFFYGDEPKFINAVLDK 152 + V+I+EYV IA E F+NA+L+K Sbjct: 114 NTNESVVINEYVDIASYALEDAEVDFVNAILNK 146 >gi|299143829|ref|ZP_07036909.1| transcription antitermination factor NusB [Peptoniphilus sp. oral taxon 386 str. F0131] gi|298518314|gb|EFI42053.1| transcription antitermination factor NusB [Peptoniphilus sp. oral taxon 386 str. F0131] Length = 141 Score = 58.5 bits (140), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 39/141 (27%), Positives = 69/141 (48%), Gaps = 14/141 (9%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEY-ETYRFCADTELDVESVYLHVDLEWFRVIIH 74 R AR+ +Q LYQ+DI +++ ++ + E + F + + ++ I Sbjct: 3 RKKARIGQMQVLYQMDITDDFSSDGLNTFLENFEFSEEEK------------DYINSTIP 50 Query: 75 GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134 ++ ++ID I S L E WS +RL + +LR + E++ +P EV I+E V I+ Sbjct: 51 EIIKNLENIDQTIQSHL-EGWSLNRLAKVDKEVLRIAIYEILYRDDIPEEVSINEAVEIS 109 Query: 135 HDFFYGDEPKFINAVLDKVSR 155 F + KFIN +L + R Sbjct: 110 KQFGSSESSKFINGILGSIYR 130 >gi|291326906|ref|ZP_06126293.2| transcription antitermination factor NusB [Providencia rettgeri DSM 1131] gi|291312467|gb|EFE52920.1| transcription antitermination factor NusB [Providencia rettgeri DSM 1131] Length = 149 Score = 58.5 bits (140), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 40/132 (30%), Positives = 64/132 (48%), Gaps = 13/132 (9%) Query: 23 AVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQH 82 AVQA+Y + G E+ Y F A+ ++ VD+ +FR ++ GV Sbjct: 24 AVQAIYSWQLSGNPIAEV-----EYEFIAEQDMS------DVDVNYFRELLSGVATNATK 72 Query: 83 IDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDE 142 +D L++ L+ + L + +ILR + EL VP +V I+E + +A F D Sbjct: 73 LDQLMAPYLSRQ--LEELGQVEKAILRVSMFELSFREDVPYKVAINEGIELAKVFGAEDS 130 Query: 143 PKFINAVLDKVS 154 KF+N VLDK + Sbjct: 131 HKFVNGVLDKAA 142 >gi|254368862|ref|ZP_04984875.1| N utilisation substance protein B [Francisella tularensis subsp. holarctica FSC022] gi|157121783|gb|EDO65953.1| N utilisation substance protein B [Francisella tularensis subsp. holarctica FSC022] Length = 141 Score = 58.5 bits (140), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 47/147 (31%), Positives = 71/147 (48%), Gaps = 13/147 (8%) Query: 10 LKLSHR-RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEW 68 +K + R R ARL AVQALYQ I + +E+ +Y Y AD + D + Sbjct: 1 MKTTARARNNARLYAVQALYQKKIADNTFSELKIQY--YADNADRH--------YTDWDL 50 Query: 69 FRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIIS 128 F +I V + ID I + ++ + ++L+ + ELIEC P +VII Sbjct: 51 FYRLIDAVKTNQDTIDKYIKENSSN--GVESINYVDYAVLQVAIAELIECLENPYQVIIK 108 Query: 129 EYVCIAHDFFYGDEPKFINAVLDKVSR 155 EYV I + + KFINAVL +++ Sbjct: 109 EYVEICYSMGTEEGYKFINAVLQNLAK 135 >gi|134301537|ref|YP_001121505.1| transcription antitermination factor NusB [Francisella tularensis subsp. tularensis WY96-3418] gi|134049314|gb|ABO46385.1| transcription antitermination factor NusB [Francisella tularensis subsp. tularensis WY96-3418] Length = 141 Score = 58.5 bits (140), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 47/147 (31%), Positives = 71/147 (48%), Gaps = 13/147 (8%) Query: 10 LKLSHR-RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEW 68 +K + R R ARL AVQALYQ I + +E+ +Y Y AD + D + Sbjct: 1 MKTTARARNNARLYAVQALYQKKIADNTFSELKIQY--YADNADRH--------YTDWDL 50 Query: 69 FRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIIS 128 F +I V + ID I + ++ + ++L+ + ELIEC P +VII Sbjct: 51 FYRLIDAVKTNQDTIDKYIKENSSN--GVESINYVDYAVLQVAIAELIECLENPYQVIIK 108 Query: 129 EYVCIAHDFFYGDEPKFINAVLDKVSR 155 EYV I + + KFINAVL +++ Sbjct: 109 EYVEICYSMGTEEGYKFINAVLQNLAK 135 >gi|95929563|ref|ZP_01312305.1| NusB antitermination factor [Desulfuromonas acetoxidans DSM 684] gi|95134260|gb|EAT15917.1| NusB antitermination factor [Desulfuromonas acetoxidans DSM 684] Length = 152 Score = 58.5 bits (140), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 40/150 (26%), Positives = 75/150 (50%), Gaps = 7/150 (4%) Query: 11 KLSHRRGIARLAAVQALYQIDIIGCSTTEIISEY-ETYRFCADT--ELDVESVYLHVDLE 67 K + R G R A++ LY + E++S++ +RF D E + L D+ Sbjct: 3 KGTRRNG--REYALKILYSLYDQDAPLDEVLSDFWGNFRFSNDVLGEPEEPQSPLSDDVI 60 Query: 68 WF-RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVI 126 +F ++ GV + + ID ++ ++ W+ R+ + S++R ELI P V+ Sbjct: 61 FFSEQLVKGVYEHLEEIDAMLLDT-SKNWALDRMPRLDLSLMRMACYELIYVDKTPTNVV 119 Query: 127 ISEYVCIAHDFFYGDEPKFINAVLDKVSRK 156 I+E + IA + D P F+N VLD+++++ Sbjct: 120 INEAIEIAKRYGTKDTPAFLNGVLDRIAKR 149 >gi|119952909|ref|YP_945118.1| transcription antitermination protein NusB [Borrelia turicatae 91E135] gi|119861680|gb|AAX17448.1| N utilization substance protein B [Borrelia turicatae 91E135] Length = 146 Score = 58.5 bits (140), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 46/144 (31%), Positives = 74/144 (51%), Gaps = 10/144 (6%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 R AR+ A Q +Y IDI C + I Y+ + D L++E ++ L ++ V+++G Sbjct: 6 RHKARVLAFQKIYSIDI-NCKAKDNI--YDIFNL-EDHGLELEE---NLKL-FYSVLVNG 57 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLEL-IECHSVPVEVIISEYVCIA 134 D + ID LIS ++ W R+D + +ILR V L + VP VII E + IA Sbjct: 58 TYDNLEFIDKLISD-ISLNWRLDRMDKVDLAILRMSVYSLKFQNLDVPKRVIIDEAILIA 116 Query: 135 HDFFYGDEPKFINAVLDKVSRKEE 158 + + KF+N +LD + + E Sbjct: 117 KKYGSKNSYKFVNGILDALLKNME 140 >gi|52080965|ref|YP_079756.1| transcription antitermination protein NusB [Bacillus licheniformis ATCC 14580] gi|52786341|ref|YP_092170.1| transcription antitermination protein NusB [Bacillus licheniformis ATCC 14580] gi|319645077|ref|ZP_07999310.1| N utilization substance protein B [Bacillus sp. BT1B_CT2] gi|81609065|sp|Q65HI7|NUSB_BACLD RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|52004176|gb|AAU24118.1| NusB [Bacillus licheniformis ATCC 14580] gi|52348843|gb|AAU41477.1| NusB [Bacillus licheniformis ATCC 14580] gi|317392886|gb|EFV73680.1| N utilization substance protein B [Bacillus sp. BT1B_CT2] Length = 129 Score = 58.5 bits (140), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 39/139 (28%), Positives = 63/139 (45%), Gaps = 16/139 (11%) Query: 15 RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74 +R AR A+Q+L+QID+ E + E D +F +++ Sbjct: 2 KRRTAREKALQSLFQIDVSDIEPNEAMQHA-----LDGQESDA----------FFEQLVY 46 Query: 75 GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134 GV++ K+ ID +I L W RL + +ILR E+I +PV V ++E + +A Sbjct: 47 GVLENKEKIDEMIKRHLV-NWKLDRLANVDRAILRLSAYEMIFLDDIPVNVSMNEAIELA 105 Query: 135 HDFFYGDEPKFINAVLDKV 153 F KF+N VL + Sbjct: 106 KQFGDDKSAKFVNGVLSNI 124 >gi|118470676|ref|YP_887353.1| transcription antitermination protein NusB [Mycobacterium smegmatis str. MC2 155] gi|166215698|sp|A0QWR5|NUSB_MYCS2 RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|118171963|gb|ABK72859.1| transcription antitermination factor NusB [Mycobacterium smegmatis str. MC2 155] Length = 160 Score = 58.2 bits (139), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 45/147 (30%), Positives = 70/147 (47%), Gaps = 14/147 (9%) Query: 12 LSHRRG-----IARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDL 66 + RRG AR AV L++ + G T E +++ A+ + DV + + L Sbjct: 1 MPDRRGDRGRHQARKRAVDLLFEAEARGL-TAEAVADSRAA--LAEDQDDVAPLNPYTVL 57 Query: 67 EWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVI 126 + GV + HID LIS+ L + W+ RL + +ILR V EL+ VP V Sbjct: 58 -----VARGVTEHAAHIDDLISAHL-QGWTLERLPAVDRAILRVAVWELLHAEDVPEPVA 111 Query: 127 ISEYVCIAHDFFYGDEPKFINAVLDKV 153 + E V +A + + P F+N VL +V Sbjct: 112 VDEAVELAKELSTDESPGFVNGVLGQV 138 >gi|226949184|ref|YP_002804275.1| N utilization substance protein B [Clostridium botulinum A2 str. Kyoto] gi|254772625|sp|C1FPB3|NUSB_CLOBJ RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|226844538|gb|ACO87204.1| N utilization substance protein B [Clostridium botulinum A2 str. Kyoto] Length = 143 Score = 58.2 bits (139), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 44/141 (31%), Positives = 68/141 (48%), Gaps = 4/141 (2%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCAD--TELDVESVYLH-VDLEWFRVI 72 R +R A++ L+Q + G + E + + R + E D ESV L VD+++ + I Sbjct: 3 RRKSREVAMRLLFQTTLNGENLEEALENLKDVRESEEITKEKDYESVDLKDVDIDYVKRI 62 Query: 73 IHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVC 132 I G+ + K+ ID I L + W RL + SILR EL +P V I+E + Sbjct: 63 IKGIEENKEEIDEKIKGNL-KNWKIERLSKVDLSILRLCTYELKFEEDIPNRVSINEAIE 121 Query: 133 IAHDFFYGDEPKFINAVLDKV 153 +A + FIN VL K+ Sbjct: 122 LAKKYSGEKSATFINGVLGKM 142 >gi|322834070|ref|YP_004214097.1| NusB antitermination factor [Rahnella sp. Y9602] gi|321169271|gb|ADW74970.1| NusB antitermination factor [Rahnella sp. Y9602] Length = 137 Score = 58.2 bits (139), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 41/132 (31%), Positives = 66/132 (50%), Gaps = 13/132 (9%) Query: 23 AVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQH 82 AVQALY + ++ E+ T E DV+ V D+ +FR ++ GV + + Sbjct: 13 AVQALYSWQLSKNDIADVELEFLT-------EQDVKDV----DIAYFRELLAGVANSAEK 61 Query: 83 IDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDE 142 +D L++ L+ + L + +ILR + EL + VP +V I+E + +A F D Sbjct: 62 LDALMAPYLSRQ--LDELGQVERAILRLALFELSKRQDVPYKVAINEAIELAKTFGAEDS 119 Query: 143 PKFINAVLDKVS 154 KF+N VLDK Sbjct: 120 HKFVNGVLDKAG 131 >gi|254994892|ref|ZP_05277082.1| N utilization substance protein B (nusB) [Anaplasma marginale str. Mississippi] gi|255003026|ref|ZP_05277990.1| N utilization substance protein B (nusB) [Anaplasma marginale str. Puerto Rico] gi|255004149|ref|ZP_05278950.1| N utilization substance protein B (nusB) [Anaplasma marginale str. Virginia] Length = 173 Score = 58.2 bits (139), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 32/91 (35%), Positives = 51/91 (56%), Gaps = 1/91 (1%) Query: 63 HVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVP 122 VD + I+ ++ R ID IS + + WS R++++ SI+RAG+ EL+ C S Sbjct: 58 RVDKKLLTKILRSMLARCSEIDATISEHINKNWSMDRINLVSLSIMRAGICELL-CFSTN 116 Query: 123 VEVIISEYVCIAHDFFYGDEPKFINAVLDKV 153 ++I+EYV IA E F+NA+L+K Sbjct: 117 ESIVINEYVDIASYALEDAEVNFVNAILNKA 147 >gi|56708465|ref|YP_170361.1| N utilisation substance protein B [Francisella tularensis subsp. tularensis SCHU S4] gi|110670936|ref|YP_667493.1| N utilisation substance protein B [Francisella tularensis subsp. tularensis FSC198] gi|224457622|ref|ZP_03666095.1| N utilisation substance protein B [Francisella tularensis subsp. tularensis MA00-2987] gi|254371089|ref|ZP_04987091.1| N utilization substance protein B [Francisella tularensis subsp. tularensis FSC033] gi|254875309|ref|ZP_05248019.1| N utilization substance protein B [Francisella tularensis subsp. tularensis MA00-2987] gi|54113219|gb|AAV29243.1| NT02FT2024 [synthetic construct] gi|56604957|emb|CAG46051.1| N utilisation substance protein B [Francisella tularensis subsp. tularensis SCHU S4] gi|110321269|emb|CAL09434.1| N utilisation substance protein B [Francisella tularensis subsp. tularensis FSC198] gi|151569329|gb|EDN34983.1| N utilization substance protein B [Francisella tularensis subsp. tularensis FSC033] gi|254841308|gb|EET19744.1| N utilization substance protein B [Francisella tularensis subsp. tularensis MA00-2987] gi|282159666|gb|ADA79057.1| N utilisation substance protein B [Francisella tularensis subsp. tularensis NE061598] Length = 141 Score = 58.2 bits (139), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 47/147 (31%), Positives = 71/147 (48%), Gaps = 13/147 (8%) Query: 10 LKLSHR-RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEW 68 +K + R R ARL AVQALYQ I + +E+ +Y Y AD + D + Sbjct: 1 MKTTARARNNARLYAVQALYQKKIADNTFSELKIQY--YADNADRH--------YTDWDL 50 Query: 69 FRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIIS 128 F +I V + ID I + ++ + ++L+ + ELIEC P +VII Sbjct: 51 FYRLIDAVKTNQDTIDKYIKENSSN--GVESINYVDYAVLQVAIAELIECLENPYQVIIK 108 Query: 129 EYVCIAHDFFYGDEPKFINAVLDKVSR 155 EYV I + + KFINAVL +++ Sbjct: 109 EYVEICYSMGTEEGYKFINAVLQNLAK 135 >gi|118497958|ref|YP_899008.1| transcription termination factor [Francisella tularensis subsp. novicida U112] gi|194323181|ref|ZP_03056965.1| transcription antitermination factor NusB [Francisella tularensis subsp. novicida FTE] gi|118423864|gb|ABK90254.1| transcription termination factor [Francisella novicida U112] gi|194322545|gb|EDX20025.1| transcription antitermination factor NusB [Francisella tularensis subsp. novicida FTE] Length = 141 Score = 58.2 bits (139), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 47/147 (31%), Positives = 70/147 (47%), Gaps = 13/147 (8%) Query: 10 LKLSHR-RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEW 68 +K + R R ARL AVQALYQ I + +E+ +Y Y AD + D + Sbjct: 1 MKTTARARNNARLYAVQALYQKKIADNTFSELKIQY--YADNADRH--------YTDWDL 50 Query: 69 FRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIIS 128 F +I V + ID I ++ + ++L+ + ELIEC P +VII Sbjct: 51 FYRLIDAVKTNQDTIDKYIKENSNN--GVESINYVDYAVLQVAIAELIECLENPYQVIIK 108 Query: 129 EYVCIAHDFFYGDEPKFINAVLDKVSR 155 EYV I + + KFINAVL +++ Sbjct: 109 EYVEICYSMGTEEGYKFINAVLQNLAK 135 >gi|145634912|ref|ZP_01790619.1| transcription antitermination protein NusB [Haemophilus influenzae PittAA] gi|229845118|ref|ZP_04465253.1| transcription antitermination protein NusB [Haemophilus influenzae 6P18H1] gi|145267778|gb|EDK07775.1| transcription antitermination protein NusB [Haemophilus influenzae PittAA] gi|229811954|gb|EEP47648.1| transcription antitermination protein NusB [Haemophilus influenzae 6P18H1] Length = 144 Score = 58.2 bits (139), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 46/148 (31%), Positives = 73/148 (49%), Gaps = 13/148 (8%) Query: 7 KKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDL 66 +K +K R AR VQALY + G + ++ F D ++D VD Sbjct: 4 QKQVKKPSARRRARECTVQALYSWAVSGNTVEQV-----ELAFVLDQDMD------GVDK 52 Query: 67 EWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVI 126 +FR + ++ + +D IS T++ +F LD I +ILR V EL VP +V+ Sbjct: 53 PYFRKLFRQTVENIETVDFSISP-YTDR-AFDELDPIETAILRLAVYELRFELDVPYKVV 110 Query: 127 ISEYVCIAHDFFYGDEPKFINAVLDKVS 154 I+E + +A F + K+IN VLDK++ Sbjct: 111 INEAIEVAKVFGADESHKYINGVLDKIA 138 >gi|239618474|ref|YP_002941796.1| NusB antitermination factor [Kosmotoga olearia TBF 19.5.1] gi|239507305|gb|ACR80792.1| NusB antitermination factor [Kosmotoga olearia TBF 19.5.1] Length = 148 Score = 58.2 bits (139), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 36/112 (32%), Positives = 63/112 (56%), Gaps = 5/112 (4%) Query: 49 FCADTE-LDVESVYLHVDLE---WFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMIL 104 F A E L+ E+ + +D E + + G+++ ID +I++ L + W+F RL I Sbjct: 29 FPAAMEYLERETAFYSLDKESKNRAKGYLMGIIEHLDEIDSIITAYL-KNWTFDRLASID 87 Query: 105 CSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRK 156 S+LR EL+ VP+EV ++E + I + +E KF+N VLDK++++ Sbjct: 88 RSVLRLATYELLYVDDVPIEVTLNEAIEITKKYGSQEEGKFVNGVLDKIAKE 139 >gi|302541095|ref|ZP_07293437.1| transcription antitermination factor NusB [Streptomyces hygroscopicus ATCC 53653] gi|302458713|gb|EFL21806.1| transcription antitermination factor NusB [Streptomyces himastatinicus ATCC 53653] Length = 152 Score = 58.2 bits (139), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 35/138 (25%), Positives = 65/138 (47%), Gaps = 9/138 (6%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 R AR A Q L++ D G S +++++ + D + V + ++ G Sbjct: 4 RNKARKRAFQILFEADQRGSSVQTVLADWIRHARTDDRQPPVSEYTMQ--------LVEG 55 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135 + ID L+++ W+ R+ ++ +ILR G EL+ + P V+I E V +A Sbjct: 56 YAEHTARIDELLATYAV-GWTLDRMPVVDRNILRLGAYELVWEDATPDAVVIDEAVQLAK 114 Query: 136 DFFYGDEPKFINAVLDKV 153 +F D P F+N +L ++ Sbjct: 115 EFSTDDSPSFVNGLLGRL 132 >gi|148270186|ref|YP_001244646.1| transcription antitermination protein NusB [Thermotoga petrophila RKU-1] gi|166215727|sp|A5ILJ7|NUSB_THEP1 RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|147735730|gb|ABQ47070.1| NusB antitermination factor [Thermotoga petrophila RKU-1] Length = 142 Score = 58.2 bits (139), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 44/153 (28%), Positives = 71/153 (46%), Gaps = 26/153 (16%) Query: 10 LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELD------VESVYLH 63 +K RR RLA +AL+Q + F D +L+ ++ Y Sbjct: 1 MKTPRRR--MRLAVFKALFQ-----------------HEFRRDEDLEQILEEILDETYDK 41 Query: 64 VDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPV 123 E R I G+ + ID LIS L EKWS +RL + ++LR EL+ +P+ Sbjct: 42 KAKEDARRYIRGIKENLPMIDNLISRYL-EKWSLNRLSAVDRNVLRLATYELLFEKDIPI 100 Query: 124 EVIISEYVCIAHDFFYGDEPKFINAVLDKVSRK 156 E I E + IA + + KF+N +LD+++++ Sbjct: 101 EATIDEAIEIAKRYGTENSGKFVNGILDRIAKE 133 >gi|56416682|ref|YP_153756.1| N utilization substance protein B [Anaplasma marginale str. St. Maries] gi|222475047|ref|YP_002563462.1| N utilization substance protein B (nusB) [Anaplasma marginale str. Florida] gi|56387914|gb|AAV86501.1| N utilization substance protein B [Anaplasma marginale str. St. Maries] gi|222419183|gb|ACM49206.1| N utilization substance protein B (nusB) [Anaplasma marginale str. Florida] Length = 177 Score = 58.2 bits (139), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 32/91 (35%), Positives = 51/91 (56%), Gaps = 1/91 (1%) Query: 63 HVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVP 122 VD + I+ ++ R ID IS + + WS R++++ SI+RAG+ EL+ C S Sbjct: 62 RVDKKLLTKILRSMLARCSEIDATISEHINKNWSMDRINLVSLSIMRAGICELL-CFSTN 120 Query: 123 VEVIISEYVCIAHDFFYGDEPKFINAVLDKV 153 ++I+EYV IA E F+NA+L+K Sbjct: 121 ESIVINEYVDIASYALEDAEVNFVNAILNKA 151 >gi|300870191|ref|YP_003785062.1| transcription antitermination protein NusB [Brachyspira pilosicoli 95/1000] gi|300687890|gb|ADK30561.1| transcription antitermination protein, NusB [Brachyspira pilosicoli 95/1000] Length = 174 Score = 58.2 bits (139), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 45/152 (29%), Positives = 73/152 (48%), Gaps = 14/152 (9%) Query: 8 KDLKLSH--RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVD 65 KDL LS R AR+ AV ALY +I + ++ E + F D + + + Sbjct: 33 KDLDLSKYGTRRQARIYAVMALYSYEI----NEKKVNINELFNFEYDDKKAANNSFT--- 85 Query: 66 LEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEV 125 + ++ G ++ Q ID +I ++ W+ SR+ + SI+R + LI +P V Sbjct: 86 ----KELVEGTINNLQKIDSIIEKY-SKNWNISRIQYVDKSIIRMSIYSLIYLKDIPKSV 140 Query: 126 IISEYVCIAHDFFYGDEPKFINAVLDKVSRKE 157 II E V IA F D KF+N +LD + ++ Sbjct: 141 IIDEAVEIAKIFGDKDSYKFVNGILDAIQEED 172 >gi|261405951|ref|YP_003242192.1| NusB antitermination factor [Paenibacillus sp. Y412MC10] gi|329924770|ref|ZP_08279759.1| transcription antitermination factor NusB [Paenibacillus sp. HGF5] gi|261282414|gb|ACX64385.1| NusB antitermination factor [Paenibacillus sp. Y412MC10] gi|328940435|gb|EGG36758.1| transcription antitermination factor NusB [Paenibacillus sp. HGF5] Length = 152 Score = 58.2 bits (139), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 43/147 (29%), Positives = 72/147 (48%), Gaps = 18/147 (12%) Query: 15 RRGIARLAAVQALYQIDIIGCSTTEIIS--------EYETYRFCADTELDVESVYLHVDL 66 +R +AR VQ+LYQ+++ + E +S E ET R D E+ ++ L Sbjct: 2 KRRVAREIVVQSLYQMEMNEVDSMEAVSMLLSEAAEENETERVIGD-EVQMKEYVLQ--- 57 Query: 67 EWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVI 126 +++G + K ID L++ L + W SRL + ILR V EL VP +V Sbjct: 58 -----LVNGTWESKDSIDELLAHYL-KGWQVSRLSRVDRQILRLAVYELTYRDDVPGKVA 111 Query: 127 ISEYVCIAHDFFYGDEPKFINAVLDKV 153 ++E + ++ F + KF+N VL ++ Sbjct: 112 VNEAIELSKHFGTEESGKFVNGVLGRM 138 >gi|153005587|ref|YP_001379912.1| NusB antitermination factor [Anaeromyxobacter sp. Fw109-5] gi|166215659|sp|A7HDY2|NUSB_ANADF RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|152029160|gb|ABS26928.1| NusB antitermination factor [Anaeromyxobacter sp. Fw109-5] Length = 143 Score = 57.8 bits (138), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 47/143 (32%), Positives = 69/143 (48%), Gaps = 12/143 (8%) Query: 12 LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71 +S +R AR A+QALYQID+ + +S RF E VE + D E F Sbjct: 1 MSLKRTRARERALQALYQIDVAAEGIDDALS-----RFWKSFE-PVEREVME-DAEGF-- 51 Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131 + GV ++ ID I T W R+ + ++LR V EL+ VPV+V I+E + Sbjct: 52 -VRGVAAHRRTIDDTIEGVST-NWRLDRMAKVDRNVLRLAVYELLRT-DVPVKVAINEAI 108 Query: 132 CIAHDFFYGDEPKFINAVLDKVS 154 + + F+N VLDKV+ Sbjct: 109 ELGKKYGSESSGAFVNGVLDKVA 131 >gi|126653060|ref|ZP_01725195.1| transcription antitermination protein NusB [Bacillus sp. B14905] gi|126590161|gb|EAZ84285.1| transcription antitermination protein NusB [Bacillus sp. B14905] Length = 127 Score = 57.8 bits (138), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 41/147 (27%), Positives = 67/147 (45%), Gaps = 25/147 (17%) Query: 15 RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLE----WFR 70 +R AR A+Q L+Q+D +T+L VE H+ + ++ Sbjct: 2 KRHEAREKALQVLFQLD--------------------NTDLTVEEAMGHIKGQPTNAFYE 41 Query: 71 VIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEY 130 I+ G + + ID + L EKWS +RL I ++LR V EL+ P V+++E Sbjct: 42 KIVTGTAEHLEEIDATLEQHL-EKWSLARLPKIERTVLRLAVYELLYMPETPKRVVLNEA 100 Query: 131 VCIAHDFFYGDEPKFINAVLDKVSRKE 157 + + F KF+N VL K + +E Sbjct: 101 IELCKTFGDDSSSKFVNGVLSKFTEQE 127 >gi|56420932|ref|YP_148250.1| transcription antitermination protein NusB [Geobacillus kaustophilus HTA426] gi|297529436|ref|YP_003670711.1| NusB antitermination factor [Geobacillus sp. C56-T3] gi|81557844|sp|Q5KXA4|NUSB_GEOKA RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|56380774|dbj|BAD76682.1| transcription termination factor [Geobacillus kaustophilus HTA426] gi|297252688|gb|ADI26134.1| NusB antitermination factor [Geobacillus sp. C56-T3] Length = 130 Score = 57.8 bits (138), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 41/140 (29%), Positives = 66/140 (47%), Gaps = 16/140 (11%) Query: 15 RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74 +R AR A+QAL+QID+ E + + ++D + R ++ Sbjct: 2 KRHEAREKALQALFQIDVGRIPPDEAL-----HNVTGGGDID----------PFLRQLVF 46 Query: 75 GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134 GV++ ++ ID L+ + L EKW+ R+ + +ILR E+ VPV V + E V +A Sbjct: 47 GVVEHQEEIDELLRANL-EKWTLERVANVDRAILRMATYEMKYADDVPVSVSLDEAVELA 105 Query: 135 HDFFYGDEPKFINAVLDKVS 154 F F+N VL KV Sbjct: 106 KKFGDWKSGSFVNGVLSKVK 125 >gi|317128425|ref|YP_004094707.1| NusB antitermination factor [Bacillus cellulosilyticus DSM 2522] gi|315473373|gb|ADU29976.1| NusB antitermination factor [Bacillus cellulosilyticus DSM 2522] Length = 132 Score = 57.8 bits (138), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 42/143 (29%), Positives = 71/143 (49%), Gaps = 16/143 (11%) Query: 15 RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74 R +AR+ AVQ+LYQI++ G S + I DT L+ + + ++ Sbjct: 2 NRRVARVRAVQSLYQIEMTGVSPDQAI----------DTVLE----NGEISDSFLSQLVE 47 Query: 75 GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134 G ++ ID L+ S L + W+ SR+ + +ILR E+ +P+ V I+E + IA Sbjct: 48 GTVEHLHEIDELLISAL-KNWALSRISRVDRAILRMATYEMKCLDDIPMNVSINEAIDIA 106 Query: 135 HDFFYGDEP-KFINAVLDKVSRK 156 F +E KF+N +L ++ K Sbjct: 107 KGFTGEEESGKFVNGILSNIATK 129 >gi|240949529|ref|ZP_04753869.1| transcription antitermination protein NusB [Actinobacillus minor NM305] gi|257464994|ref|ZP_05629365.1| transcription antitermination protein NusB [Actinobacillus minor 202] gi|240296102|gb|EER46763.1| transcription antitermination protein NusB [Actinobacillus minor NM305] gi|257450654|gb|EEV24697.1| transcription antitermination protein NusB [Actinobacillus minor 202] Length = 144 Score = 57.8 bits (138), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 51/145 (35%), Positives = 69/145 (47%), Gaps = 7/145 (4%) Query: 10 LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF 69 +KL+ RR AR AVQALY I S EI + T F A+ + D E +D F Sbjct: 1 MKLTPRRR-ARECAVQALYSWAISQNSVEEIELVFHTDTFAAE-DPDTEG---KIDKALF 55 Query: 70 RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISE 129 I G + ID + L + +D+I SILR EL P +VII+E Sbjct: 56 TRIFRGTVASIDEIDRSLQPFLDR--NPENVDLIERSILRMAAFELHFEQDTPYKVIINE 113 Query: 130 YVCIAHDFFYGDEPKFINAVLDKVS 154 + +A F D K+IN VLDK++ Sbjct: 114 AIEVAKAFGSDDSHKYINGVLDKLA 138 >gi|113460974|ref|YP_719041.1| transcription antitermination protein NusB [Haemophilus somnus 129PT] gi|119390774|sp|Q0I3N5|NUSB_HAES1 RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|112823017|gb|ABI25106.1| N utilization substance protein B [Haemophilus somnus 129PT] Length = 144 Score = 57.8 bits (138), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 48/144 (33%), Positives = 72/144 (50%), Gaps = 12/144 (8%) Query: 11 KLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFR 70 KLS RR AR AVQ LY I + EI F D + +++ V D+ +FR Sbjct: 7 KLSPRRR-ARECAVQTLYSWAISKNAPEEI-----ELNFIVDQDNEMKGV----DMPYFR 56 Query: 71 VIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEY 130 + +D + +D +++ L LD I C+ILR V EL VP +V+I+E Sbjct: 57 KLFRQTVDHVEIVDSIMAPYLDR--DNVELDPIECAILRLAVYELKFELDVPYKVVINEA 114 Query: 131 VCIAHDFFYGDEPKFINAVLDKVS 154 + +A F + K+IN VLDK++ Sbjct: 115 IEVAKVFGAEESHKYINGVLDKIA 138 >gi|296170770|ref|ZP_06852342.1| N utilization substance protein B [Mycobacterium parascrofulaceum ATCC BAA-614] gi|295894585|gb|EFG74322.1| N utilization substance protein B [Mycobacterium parascrofulaceum ATCC BAA-614] Length = 168 Score = 57.8 bits (138), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 43/138 (31%), Positives = 62/138 (44%), Gaps = 9/138 (6%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 R AR AV L++ + G E++ T A DV + + G Sbjct: 11 RHQARKRAVDLLFEAEARGLGPAEVVDVRAT---LAAANPDVAPLQ-----PYTVAAARG 62 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135 V + HID LISS L + W+ RL + +ILR V EL+ VP V + E V +A Sbjct: 63 VGEHAAHIDDLISSHL-QGWTLDRLPAVDRAILRVAVWELLYADDVPEPVAVDEAVQLAK 121 Query: 136 DFFYGDEPKFINAVLDKV 153 + + P F+N VL +V Sbjct: 122 ELSTDESPAFVNGVLGQV 139 >gi|308174227|ref|YP_003920932.1| transcription termination factor NusB [Bacillus amyloliquefaciens DSM 7] gi|307607091|emb|CBI43462.1| transcription termination factor NusB [Bacillus amyloliquefaciens DSM 7] gi|328554172|gb|AEB24664.1| transcription antitermination protein NusB [Bacillus amyloliquefaciens TA208] gi|328912564|gb|AEB64160.1| transcription termination factor NusB [Bacillus amyloliquefaciens LL3] Length = 130 Score = 57.8 bits (138), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 39/139 (28%), Positives = 65/139 (46%), Gaps = 16/139 (11%) Query: 15 RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74 +R AR A+QAL+QID+ + E I LD E +F +++ Sbjct: 2 KRRTAREKALQALFQIDVSDIAPNEAIEHA----------LDGEKTDA-----FFEQLVY 46 Query: 75 GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134 GV++ + +D +IS L W R+ + +ILR V E++ +P V ++E + +A Sbjct: 47 GVIEHQVQLDEMISGHLV-NWKLDRIANVDRAILRLAVYEMVYTDDIPANVSLNEAIELA 105 Query: 135 HDFFYGDEPKFINAVLDKV 153 F KF+N VL + Sbjct: 106 KRFGDDKAAKFVNGVLSNI 124 >gi|148379847|ref|YP_001254388.1| N utilization substance protein B [Clostridium botulinum A str. ATCC 3502] gi|153933180|ref|YP_001384144.1| transcription antitermination protein NusB [Clostridium botulinum A str. ATCC 19397] gi|153934479|ref|YP_001387685.1| transcription antitermination protein NusB [Clostridium botulinum A str. Hall] gi|153938662|ref|YP_001391208.1| transcription antitermination protein NusB [Clostridium botulinum F str. Langeland] gi|168180474|ref|ZP_02615138.1| N utilization substance protein B [Clostridium botulinum NCTC 2916] gi|168184572|ref|ZP_02619236.1| N utilization substance protein B [Clostridium botulinum Bf] gi|170757090|ref|YP_001781437.1| transcription antitermination protein NusB [Clostridium botulinum B1 str. Okra] gi|237795301|ref|YP_002862853.1| N utilization substance protein B [Clostridium botulinum Ba4 str. 657] gi|166215682|sp|A7FUU1|NUSB_CLOB1 RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|166215683|sp|A5I310|NUSB_CLOBH RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|166215684|sp|A7GEJ8|NUSB_CLOBL RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|229620057|sp|B1IMN9|NUSB_CLOBK RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|259514805|sp|C3KXC7|NUSB_CLOB6 RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|148289331|emb|CAL83427.1| N utilization substance protein b [Clostridium botulinum A str. ATCC 3502] gi|152929224|gb|ABS34724.1| N utilization substance protein B [Clostridium botulinum A str. ATCC 19397] gi|152930393|gb|ABS35892.1| N utilization substance protein B [Clostridium botulinum A str. Hall] gi|152934558|gb|ABS40056.1| N utilization substance protein B [Clostridium botulinum F str. Langeland] gi|169122302|gb|ACA46138.1| N utilization substance protein B [Clostridium botulinum B1 str. Okra] gi|182668651|gb|EDT80629.1| N utilization substance protein B [Clostridium botulinum NCTC 2916] gi|182672364|gb|EDT84325.1| N utilization substance protein B [Clostridium botulinum Bf] gi|229261715|gb|ACQ52748.1| N utilization substance protein B [Clostridium botulinum Ba4 str. 657] gi|295319244|gb|ADF99621.1| N utilization substance protein B [Clostridium botulinum F str. 230613] gi|322806136|emb|CBZ03704.1| transcription termination protein NusB [Clostridium botulinum H04402 065] Length = 143 Score = 57.8 bits (138), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 43/141 (30%), Positives = 68/141 (48%), Gaps = 4/141 (2%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCAD--TELDVESVYLH-VDLEWFRVI 72 R +R A++ L+Q + G + E + + R + E D ESV L VD+++ + I Sbjct: 3 RRKSREVAMRLLFQTTLNGENLEEALENLKDVRESEEITKEKDYESVDLKDVDIDYVKRI 62 Query: 73 IHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVC 132 I G+ + K+ ID I L + W RL + SILR EL +P V ++E + Sbjct: 63 IKGIEENKEEIDEKIKGNL-KNWKIERLSKVDLSILRLCTYELKFEEDIPNRVSVNEAIE 121 Query: 133 IAHDFFYGDEPKFINAVLDKV 153 +A + FIN VL K+ Sbjct: 122 LAKKYSGEKSATFINGVLGKM 142 >gi|169828975|ref|YP_001699133.1| N utilization substance protein B-like protein [Lysinibacillus sphaericus C3-41] gi|238688177|sp|B1HRY0|NUSB_LYSSC RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|168993463|gb|ACA41003.1| N utilization substance protein B-like protein (NusB-like protein) [Lysinibacillus sphaericus C3-41] Length = 127 Score = 57.8 bits (138), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 41/147 (27%), Positives = 67/147 (45%), Gaps = 25/147 (17%) Query: 15 RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLE----WFR 70 +R AR A+Q L+Q+D +T+L VE H+ + ++ Sbjct: 2 KRHEAREKALQVLFQLD--------------------NTDLTVEEAMGHIKGQPTNVFYE 41 Query: 71 VIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEY 130 I+ G + + ID + L EKWS +RL I ++LR V EL+ P V+++E Sbjct: 42 KIVTGTAEHLEEIDATLEQHL-EKWSLARLPKIERTVLRLAVYELLYMPETPKRVVLNEA 100 Query: 131 VCIAHDFFYGDEPKFINAVLDKVSRKE 157 + + F KF+N VL K + +E Sbjct: 101 IELCKTFGDDSSSKFVNGVLSKFTEQE 127 >gi|45656304|ref|YP_000390.1| transcription antitermination protein NusB [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] gi|45599538|gb|AAS69027.1| transcription termination factor [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] Length = 126 Score = 57.8 bits (138), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 41/138 (29%), Positives = 70/138 (50%), Gaps = 13/138 (9%) Query: 26 ALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDL 85 ALYQ+++ E++ +++ Y D + + E V I++GV+ ++ ID Sbjct: 2 ALYQLELTQPPLKEVL-KFKWY----DKKTEPEERDFAVS------IVNGVVKNQEQIDT 50 Query: 86 LISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKF 145 LI ++ W FSR+ ++ +ILR + L+ VP V I E V + +F + +F Sbjct: 51 LIKKY-SKNWDFSRISIVNKAILRLSIYALLYTWEVPKNVTIDEAVELTKEFESEESARF 109 Query: 146 INAVLDKVSRKEEIKRSG 163 +N VLD + K EIK G Sbjct: 110 VNGVLDAI-LKNEIKSDG 126 >gi|220929324|ref|YP_002506233.1| NusB antitermination factor [Clostridium cellulolyticum H10] gi|254772626|sp|B8I3B0|NUSB_CLOCE RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|219999652|gb|ACL76253.1| NusB antitermination factor [Clostridium cellulolyticum H10] Length = 145 Score = 57.8 bits (138), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 41/140 (29%), Positives = 70/140 (50%), Gaps = 12/140 (8%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 R +R A++ LYQ++I E I + L+ ES+ + D E+ + I+ G Sbjct: 3 RRASRETAMKLLYQLEIQKTDRDEQI----------NMALEDESLTKN-DREYIKGIVDG 51 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135 V ++ +D +I T W +RL I S+LR G+ E++ +P V ++E V +A Sbjct: 52 VYEKTPVLDGIIEKKAT-GWKINRLSKIDLSVLRIGIYEILYRDDIPFSVSVNEAVELAK 110 Query: 136 DFFYGDEPKFINAVLDKVSR 155 + D F+N +L KVS+ Sbjct: 111 KYSNEDAGAFVNGLLAKVSK 130 >gi|282882096|ref|ZP_06290737.1| transcription antitermination factor NusB [Peptoniphilus lacrimalis 315-B] gi|300814940|ref|ZP_07095168.1| transcription antitermination factor NusB [Peptoniphilus sp. oral taxon 836 str. F0141] gi|281298126|gb|EFA90581.1| transcription antitermination factor NusB [Peptoniphilus lacrimalis 315-B] gi|300510910|gb|EFK38182.1| transcription antitermination factor NusB [Peptoniphilus sp. oral taxon 836 str. F0141] Length = 139 Score = 57.8 bits (138), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 39/136 (28%), Positives = 68/136 (50%), Gaps = 14/136 (10%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEY-ETYRFCADTELDVESVYLHVDLEWFRVIIH 74 R AR+ A+Q LY +++ + E I ++ E Y F + E Y++ +I Sbjct: 3 RKNARVGAMQLLYSMELNKDFSQENIEKFFENYDFS-----ESEQSYINS-------VIS 50 Query: 75 GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134 +++ +D ++S L + W+ RL + ILR + E + +PVEV I+E V IA Sbjct: 51 ELVNNLDSVDKVLSDNL-QGWTIPRLATVDREILRVAIFEFLYRKDIPVEVSINEAVEIA 109 Query: 135 HDFFYGDEPKFINAVL 150 + + PKF+N +L Sbjct: 110 KKYSSEESPKFVNGIL 125 >gi|255327156|ref|ZP_05368231.1| transcription antitermination factor NusB [Rothia mucilaginosa ATCC 25296] gi|283458028|ref|YP_003362637.1| transcription termination factor [Rothia mucilaginosa DY-18] gi|255295774|gb|EET75116.1| transcription antitermination factor NusB [Rothia mucilaginosa ATCC 25296] gi|283134052|dbj|BAI64817.1| transcription termination factor [Rothia mucilaginosa DY-18] Length = 136 Score = 57.8 bits (138), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 40/138 (28%), Positives = 61/138 (44%), Gaps = 14/138 (10%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 R ARL A++ L++ D E++ Y + E II G Sbjct: 4 RTKARLRALEVLFEADQRNEDYIEVLRRRRLYTVAQISAYSEE-------------IIRG 50 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135 V D + I + + + WSF R+ + ++LR G EL+ VP V ISE V +A Sbjct: 51 VRDHDEEIREFVETYARD-WSFERMPAVDRAVLRIGTWELLYNDEVPDAVAISEAVGLAR 109 Query: 136 DFFYGDEPKFINAVLDKV 153 + PKF+N +LDK+ Sbjct: 110 VLSTNESPKFVNGLLDKL 127 >gi|108804294|ref|YP_644231.1| NusB antitermination factor [Rubrobacter xylanophilus DSM 9941] gi|119390815|sp|Q1AW09|NUSB_RUBXD RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|108765537|gb|ABG04419.1| NusB antitermination factor [Rubrobacter xylanophilus DSM 9941] Length = 139 Score = 57.8 bits (138), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 36/135 (26%), Positives = 62/135 (45%), Gaps = 15/135 (11%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 R AR A LYQ D+ G +I + YR EL+ ++ ++ G Sbjct: 3 RRTARKQAFFILYQSDVTGSPAEPLIGRWRAYR----GELE----------DYAERVVRG 48 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135 V ++ +D ++ ++E W R+ + +ILR + E++ VP EV ++E V +A Sbjct: 49 VERERERLDAVLDG-VSEGWPVWRMSAVDRTILRLALYEMLHVQDVPPEVAVNEAVELAK 107 Query: 136 DFFYGDEPKFINAVL 150 F + P F+ VL Sbjct: 108 GFSGEEAPSFVGGVL 122 >gi|78222837|ref|YP_384584.1| NusB antitermination factor [Geobacter metallireducens GS-15] gi|119390772|sp|Q39V65|NUSB_GEOMG RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|78194092|gb|ABB31859.1| NusB antitermination factor [Geobacter metallireducens GS-15] Length = 138 Score = 57.8 bits (138), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 27/83 (32%), Positives = 49/83 (59%), Gaps = 1/83 (1%) Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131 ++ GV++ ++ ID I+ ++ W+ SR+ + +ILR + EL+ +P V I+E + Sbjct: 50 LVRGVLEHRETIDATITEK-SKNWAISRMAKVDLNILRLAIYELLYRGDIPKNVTINEAI 108 Query: 132 CIAHDFFYGDEPKFINAVLDKVS 154 +A F D P FIN +LD+V+ Sbjct: 109 EVAKKFGTEDSPAFINGILDEVA 131 >gi|239917765|ref|YP_002957323.1| transcription antitermination factor NusB [Micrococcus luteus NCTC 2665] gi|239838972|gb|ACS30769.1| transcription antitermination factor NusB [Micrococcus luteus NCTC 2665] Length = 150 Score = 57.8 bits (138), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 41/138 (29%), Positives = 69/138 (50%), Gaps = 14/138 (10%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 R +R AV+ L++ + G + +E I T R ES L V+ + + ++ G Sbjct: 18 RSRSRQRAVEILFEAEQRGSTVSEGI---RTRR---------ESTDLQVNA-YTQRLVEG 64 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135 V+ ++ +D +SS + WS R+ + +ILR G EL+ VP V ISE V +A Sbjct: 65 VIADQERLDEALSS-YSRGWSLDRMPAVDRAILRVGAWELLFQDDVPDAVAISEAVALAA 123 Query: 136 DFFYGDEPKFINAVLDKV 153 D P+F+N +L ++ Sbjct: 124 QLSTDDSPEFVNGLLGRL 141 >gi|261417744|ref|YP_003251426.1| transcription antitermination protein NusB [Geobacillus sp. Y412MC61] gi|319767444|ref|YP_004132945.1| NusB antitermination factor [Geobacillus sp. Y412MC52] gi|261374201|gb|ACX76944.1| NusB antitermination factor [Geobacillus sp. Y412MC61] gi|317112310|gb|ADU94802.1| NusB antitermination factor [Geobacillus sp. Y412MC52] Length = 130 Score = 57.8 bits (138), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 41/139 (29%), Positives = 66/139 (47%), Gaps = 16/139 (11%) Query: 15 RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74 +R AR A+QAL+QID+ E + + ++D + R ++ Sbjct: 2 KRHEAREKALQALFQIDVGRIPPDEAL-----HNVTGGGDID----------PFLRQLVF 46 Query: 75 GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134 GV++ ++ ID L+ + L EKW+ R+ + +ILR E+ VPV V + E V +A Sbjct: 47 GVVEHQEEIDELLRANL-EKWTLERVANVDRAILRMATYEMKYADDVPVSVSLDEAVELA 105 Query: 135 HDFFYGDEPKFINAVLDKV 153 F F+N VL KV Sbjct: 106 KTFGDWKSGSFVNGVLSKV 124 >gi|19552830|ref|NP_600832.1| transcription antitermination protein NusB [Corynebacterium glutamicum ATCC 13032] gi|62390501|ref|YP_225903.1| transcription antitermination protein NusB [Corynebacterium glutamicum ATCC 13032] gi|24638069|sp|Q8NQ33|NUSB_CORGL RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|21324387|dbj|BAB99011.1| Transcription termination factor [Corynebacterium glutamicum ATCC 13032] gi|41325838|emb|CAF21627.1| Transcription termination factor [Corynebacterium glutamicum ATCC 13032] Length = 227 Score = 57.8 bits (138), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 45/159 (28%), Positives = 72/159 (45%), Gaps = 7/159 (4%) Query: 3 IQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYL 62 + + ++D K R AR+ AV L++ + II + ++ DT V V Sbjct: 1 MSERRQDYKRHGSRYKARMRAVDILFEAESRDVDPVAIIDDR--HKLARDTNPIVAPV-- 56 Query: 63 HVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVP 122 E+ II+GV +D+ ++ + E W+ RL + +ILR E+I VP Sbjct: 57 ---AEYTETIINGVAVELDTLDVFLAEHIAETWTLGRLPSVDRAILRVASWEMIYNADVP 113 Query: 123 VEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKR 161 V I E V IA ++ +INA LD ++ K E R Sbjct: 114 VTTAIVEAVEIASEYSGDKSSAYINATLDAMASKVETLR 152 >gi|120598061|ref|YP_962635.1| transcription antitermination protein NusB [Shewanella sp. W3-18-1] gi|166215720|sp|A1RHD6|NUSB_SHESW RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|120558154|gb|ABM24081.1| NusB antitermination factor [Shewanella sp. W3-18-1] Length = 134 Score = 57.8 bits (138), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 48/148 (32%), Positives = 73/148 (49%), Gaps = 15/148 (10%) Query: 10 LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF 69 +K S RR RLA VQA+Y + G + ++ E+E F + LD VD+ +F Sbjct: 1 MKPSERRKARRLA-VQAIYSWQLSGNNIADV--EHE---FLTEQSLD------GVDVAYF 48 Query: 70 RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISE 129 R + GV +K +D LI L + + +I+R EL VP +V I+E Sbjct: 49 RELFSGVATKKPQLDELIIPHLER--PIDEVSPVEKAIVRLATYELTFRKDVPYKVAINE 106 Query: 130 YVCIAHDFFYGDEPKFINAVLDK-VSRK 156 + +A F + KF+N +LDK V+RK Sbjct: 107 AIELAKAFGADESHKFVNGLLDKLVARK 134 >gi|194016988|ref|ZP_03055601.1| transcription antitermination factor NusB [Bacillus pumilus ATCC 7061] gi|194011594|gb|EDW21163.1| transcription antitermination factor NusB [Bacillus pumilus ATCC 7061] Length = 131 Score = 57.4 bits (137), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 43/154 (27%), Positives = 73/154 (47%), Gaps = 30/154 (19%) Query: 15 RRGIARLAAVQALYQIDIIGCSTTEIIS----EYETYRFCADTELDVESVYLHVDLEWFR 70 +R AR A+Q L+QID+ E I+ E E+ F F Sbjct: 2 KRRTAREKALQTLFQIDVSNIDPKEAITHALDEQESDPF-------------------FE 42 Query: 71 VIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEY 130 ++ GV+++K +D +IS L W R+ + +ILR V E++ +PV V ++E Sbjct: 43 ELVFGVLEQKDKLDDMISQHLV-NWKLDRIANVDRAILRLSVYEMVYQEDIPVSVSMNEA 101 Query: 131 VCIAHDFFYGDEP--KFINAVLDKVSRKEEIKRS 162 + +A +GD+ KF+N VL + K ++K+ Sbjct: 102 IELAK--LFGDDKASKFVNGVLSNI--KNDLKQQ 131 >gi|15594453|ref|NP_212241.1| transcription antitermination protein NusB [Borrelia burgdorferi B31] gi|7387971|sp|O51134|NUSB_BORBU RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|2687995|gb|AAC66498.1| N-utilization substance protein B (nusB) [Borrelia burgdorferi B31] Length = 145 Score = 57.4 bits (137), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 41/140 (29%), Positives = 67/140 (47%), Gaps = 9/140 (6%) Query: 20 RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79 R+ A Q +Y IDI + +I + D +LD+E+ + ++ ++ G D Sbjct: 8 RVLAFQKIYSIDINQSAMDDIFDIFN----IEDKDLDIENESIK---SFYSSLVIGTFDN 60 Query: 80 KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLEL-IECHSVPVEVIISEYVCIAHDFF 138 +HID LI ++ WS R+D + +ILR GV L + II E + IA + Sbjct: 61 LEHIDSLIRD-ISLNWSLERMDKVDLAILRMGVYSLKFQNFENSKRAIIDEAILIAKKYG 119 Query: 139 YGDEPKFINAVLDKVSRKEE 158 + KFIN +LD + + E Sbjct: 120 SKNSYKFINGILDALLKNME 139 >gi|256391589|ref|YP_003113153.1| NusB antitermination factor [Catenulispora acidiphila DSM 44928] gi|256357815|gb|ACU71312.1| NusB antitermination factor [Catenulispora acidiphila DSM 44928] Length = 145 Score = 57.4 bits (137), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 36/151 (23%), Positives = 74/151 (49%), Gaps = 7/151 (4%) Query: 12 LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71 ++ R AR A++ L++ D+ G ++++ + E + V + Sbjct: 1 MASPRSKARQRALEILFEADLRGVDPRTVLADTQARIRAQGPEGTIPQVQ-----PYAAT 55 Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131 ++ GV++ ID L+ +E W+ R+ + ++LR GV EL+ VP V++ E V Sbjct: 56 LVEGVLEHVDKIDDLLDEH-SEGWALDRMPTVDRNVLRIGVYELLWQSDVPDAVVLDEAV 114 Query: 132 CIAHDFFYGDEPKFINAVLDKVSR-KEEIKR 161 +A + P+F+N +L +++ K+ +KR Sbjct: 115 SLARLMSTDESPQFVNGLLARIAEVKDSLKR 145 >gi|78188395|ref|YP_378733.1| NusB antitermination factor [Chlorobium chlorochromatii CaD3] gi|119390755|sp|Q3ATI5|NUSB_CHLCH RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|78170594|gb|ABB27690.1| NusB antitermination factor [Chlorobium chlorochromatii CaD3] Length = 169 Score = 57.4 bits (137), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 43/154 (27%), Positives = 76/154 (49%), Gaps = 15/154 (9%) Query: 13 SHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVI 72 ++RR I R +QALY +++ G + E T AD +++F ++ Sbjct: 3 TYRRQI-REKILQALYTVELRGITLDEAAGWLLTEEILADPNA----------MKFFNLL 51 Query: 73 IHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVC 132 + + ++ ID I+ T W SR+ +I +I+R + E++ C +P +V I+E + Sbjct: 52 LSSIKAHREEIDNYIAQQ-TFNWDMSRIAIIDKNIIRMALTEILYCEDIPPKVSINEAIE 110 Query: 133 IAHDFFYGDE-PKFINAVLDKVSRKEEIKRSGCV 165 IA F D+ KF+N +LD + K +K G V Sbjct: 111 IAKKFNSTDKSSKFVNGILDAIFNK--LKTEGKV 142 >gi|126175357|ref|YP_001051506.1| transcription antitermination protein NusB [Shewanella baltica OS155] gi|146293868|ref|YP_001184292.1| transcription antitermination protein NusB [Shewanella putrefaciens CN-32] gi|153001667|ref|YP_001367348.1| transcription antitermination protein NusB [Shewanella baltica OS185] gi|160876405|ref|YP_001555721.1| transcription antitermination protein NusB [Shewanella baltica OS195] gi|217972400|ref|YP_002357151.1| transcription antitermination protein NusB [Shewanella baltica OS223] gi|304410187|ref|ZP_07391806.1| NusB antitermination factor [Shewanella baltica OS183] gi|307302102|ref|ZP_07581860.1| NusB antitermination factor [Shewanella baltica BA175] gi|166215715|sp|A3D7C4|NUSB_SHEB5 RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|166215716|sp|A6WR46|NUSB_SHEB8 RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|166215718|sp|A4Y960|NUSB_SHEPC RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|189035904|sp|A9KYJ0|NUSB_SHEB9 RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|254772654|sp|B8E6W7|NUSB_SHEB2 RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|125998562|gb|ABN62637.1| NusB antitermination factor [Shewanella baltica OS155] gi|145565558|gb|ABP76493.1| NusB antitermination factor [Shewanella putrefaciens CN-32] gi|151366285|gb|ABS09285.1| NusB antitermination factor [Shewanella baltica OS185] gi|160861927|gb|ABX50461.1| NusB antitermination factor [Shewanella baltica OS195] gi|217497535|gb|ACK45728.1| NusB antitermination factor [Shewanella baltica OS223] gi|304351596|gb|EFM15995.1| NusB antitermination factor [Shewanella baltica OS183] gi|306914140|gb|EFN44561.1| NusB antitermination factor [Shewanella baltica BA175] gi|315268595|gb|ADT95448.1| NusB antitermination factor [Shewanella baltica OS678] gi|319427240|gb|ADV55314.1| NusB antitermination factor [Shewanella putrefaciens 200] Length = 134 Score = 57.4 bits (137), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 48/148 (32%), Positives = 73/148 (49%), Gaps = 15/148 (10%) Query: 10 LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF 69 +K S RR RLA VQA+Y + G + ++ E+E F + LD VD+ +F Sbjct: 1 MKPSERRKARRLA-VQAIYSWQLSGNNIADV--EHE---FLTEQSLD------GVDVAYF 48 Query: 70 RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISE 129 R + GV +K +D LI L + + +I+R EL VP +V I+E Sbjct: 49 RELFSGVATKKTQLDELIIPHLER--PIDEVSPVEKAIVRLATYELTFRKDVPYKVAINE 106 Query: 130 YVCIAHDFFYGDEPKFINAVLDK-VSRK 156 + +A F + KF+N +LDK V+RK Sbjct: 107 AIELAKAFGADESHKFVNGLLDKLVARK 134 >gi|301170042|emb|CBW29646.1| transcription antitermination protein [Haemophilus influenzae 10810] Length = 144 Score = 57.4 bits (137), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 44/148 (29%), Positives = 71/148 (47%), Gaps = 13/148 (8%) Query: 7 KKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDL 66 +K +K R AR VQALY + G + ++ F D +++ VD Sbjct: 4 QKQVKKPSARRRARECTVQALYSWAVSGNTAEQV-----ELAFVLDQDME------GVDK 52 Query: 67 EWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVI 126 +FR + ++ + +D IS + +F LD I +ILR V EL VP +V+ Sbjct: 53 PYFRKLFRQTIENIETVDFSISPYIDR--AFDELDPIETAILRLAVYELRFELDVPYKVV 110 Query: 127 ISEYVCIAHDFFYGDEPKFINAVLDKVS 154 I+E + +A F + K+IN VLDK++ Sbjct: 111 INEAIEVAKVFGADESHKYINGVLDKIA 138 >gi|313887990|ref|ZP_07821668.1| transcription antitermination factor NusB [Peptoniphilus harei ACS-146-V-Sch2b] gi|312845945|gb|EFR33328.1| transcription antitermination factor NusB [Peptoniphilus harei ACS-146-V-Sch2b] Length = 132 Score = 57.4 bits (137), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 40/145 (27%), Positives = 73/145 (50%), Gaps = 16/145 (11%) Query: 12 LSHRRGIARLAAVQALYQIDIIGCSTTEIISEY-ETYRFCADTELDVESVYLHVDLEWFR 70 +S +R AR+ A+QAL+ +D+ +T+ + + E + F D ++++ + Sbjct: 1 MSRKR--ARIGAMQALFAMDVNDDFSTDKLDLFMENHEFQGD------------EVDYIK 46 Query: 71 VIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEY 130 + ++D+ +D I L + W+ +RL + ILR V E + +P EV I+E Sbjct: 47 RTVPDILDKLDLVDETIEKNL-KGWTMARLAKVDRQILRIAVYEFLYKDDIPEEVSINEA 105 Query: 131 VCIAHDFFYGDEPKFINAVLDKVSR 155 V IA + + PKFIN +L + R Sbjct: 106 VEIARLYSSDEAPKFINGILGTIYR 130 >gi|188534655|ref|YP_001908452.1| transcription antitermination protein NusB [Erwinia tasmaniensis Et1/99] gi|238691979|sp|B2VHS8|NUSB_ERWT9 RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|188029697|emb|CAO97576.1| N utilization substance protein B [Erwinia tasmaniensis Et1/99] Length = 139 Score = 57.4 bits (137), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 43/132 (32%), Positives = 66/132 (50%), Gaps = 13/132 (9%) Query: 23 AVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQH 82 AVQALY I ++ Y+F A E DV+ V D+ +FR ++ GV + Sbjct: 13 AVQALYSWQISKNDIADV-----EYQFLA--EQDVKDV----DITYFRELVGGVATNSAY 61 Query: 83 IDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDE 142 +D L+ L+ + L + +ILR + EL + VP +V I+E + +A F D Sbjct: 62 LDGLMKPYLSRQ--LEELGQVEKAILRISLFELSKRSDVPYKVAINEGIELAKVFGAEDS 119 Query: 143 PKFINAVLDKVS 154 KF+N VLDK + Sbjct: 120 HKFVNGVLDKAA 131 >gi|238898983|ref|YP_002924665.1| transcription termination; L factor [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] gi|259514851|sp|C4K7H4|NUSB_HAMD5 RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|229466743|gb|ACQ68517.1| transcription termination; L factor [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] Length = 151 Score = 57.4 bits (137), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 48/145 (33%), Positives = 70/145 (48%), Gaps = 14/145 (9%) Query: 10 LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF 69 + S RR AR VQALY + + I+E E F AD E D+ +F Sbjct: 1 MNPSARRR-ARECVVQALYAWQV----SQNDIAEVE-LSFLADQETQ------GADIAYF 48 Query: 70 RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISE 129 R ++ GV + +D L++ L+ + F L I +ILR + EL + VP +V I+E Sbjct: 49 RHVLLGVASDVEALDTLMTPYLSRQ--FQELGQIEKAILRLAMFELNKRDDVPYKVTINE 106 Query: 130 YVCIAHDFFYGDEPKFINAVLDKVS 154 + + F D KFIN VLDK + Sbjct: 107 AIELGKTFGADDSHKFINGVLDKAA 131 >gi|196248859|ref|ZP_03147559.1| NusB antitermination factor [Geobacillus sp. G11MC16] gi|196211735|gb|EDY06494.1| NusB antitermination factor [Geobacillus sp. G11MC16] Length = 130 Score = 57.4 bits (137), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 44/139 (31%), Positives = 62/139 (44%), Gaps = 16/139 (11%) Query: 15 RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74 +R AR A+QAL+QID+ E I E+D + R ++ Sbjct: 2 KRHEAREKALQALFQIDVGHIPPDEAIGN-----VTGSGEVD----------PFLRQLVF 46 Query: 75 GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134 GV++ + ID L+ S L EKW R+ + ILR E+ VPV V + E V +A Sbjct: 47 GVIEHRAEIDELLRSNL-EKWKLERVANVDRVILRMATYEMKYVDDVPVSVSLDEAVELA 105 Query: 135 HDFFYGDEPKFINAVLDKV 153 F F+N VL KV Sbjct: 106 KKFGDWKSGSFVNGVLSKV 124 >gi|145295740|ref|YP_001138561.1| transcription antitermination protein NusB [Corynebacterium glutamicum R] gi|140845660|dbj|BAF54659.1| hypothetical protein [Corynebacterium glutamicum R] Length = 212 Score = 57.4 bits (137), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 45/164 (27%), Positives = 73/164 (44%), Gaps = 7/164 (4%) Query: 3 IQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYL 62 + + ++D K R AR+ AV L++ + II + ++ DT V V Sbjct: 1 MSERRQDYKRHGSRYKARMRAVDILFEAESRDVDPVAIIDDR--HKLARDTNPIVAPV-- 56 Query: 63 HVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVP 122 E+ II+GV +D+ ++ + E W+ RL + +ILR E+I VP Sbjct: 57 ---AEYTETIINGVAVELDTLDVFLAEHIAETWTLGRLPSVDRAILRVASWEMIYNTDVP 113 Query: 123 VEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRSGCVS 166 V I E V IA ++ +INA LD ++ K E R + Sbjct: 114 VTTAIVEAVEIASEYSGDKSSAYINATLDAMASKVETLRERAAN 157 >gi|332703471|ref|ZP_08423559.1| NusB antitermination factor [Desulfovibrio africanus str. Walvis Bay] gi|332553620|gb|EGJ50664.1| NusB antitermination factor [Desulfovibrio africanus str. Walvis Bay] Length = 161 Score = 57.4 bits (137), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 45/149 (30%), Positives = 73/149 (48%), Gaps = 14/149 (9%) Query: 11 KLSHRRGIARLAAVQALYQIDIIGCSTTEIISEY--ETYRFCADTELDVESVYLHVDLEW 68 K S RR AR A Q LY I+ S + + E R T+LD +S +L Sbjct: 5 KKSARR-FAREKAFQVLYGIEFTDSSHLGAVRDAFVEYPRPERQTKLDEKSDTFAWEL-- 61 Query: 69 FRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIIS 128 + G + K +D +I ++ W +R+ + +ILR G+ E++ +P++V I+ Sbjct: 62 ----VKGTWESKAELDGIIGR-FSQNWKVTRIAKVDLTILRLGMFEILHRPDIPLKVAIN 116 Query: 129 EYVCIAHDFFYGDE--PKFINAVLDKVSR 155 E V +A +F GDE F+N +LD +R Sbjct: 117 EAVELAKEF--GDEHSRNFVNGILDAAAR 143 >gi|114562217|ref|YP_749730.1| transcription antitermination protein NusB [Shewanella frigidimarina NCIMB 400] gi|119390819|sp|Q086C3|NUSB_SHEFN RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|114333510|gb|ABI70892.1| NusB antitermination factor [Shewanella frigidimarina NCIMB 400] Length = 134 Score = 57.4 bits (137), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 44/144 (30%), Positives = 67/144 (46%), Gaps = 14/144 (9%) Query: 10 LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF 69 +K S RR RLA VQA+Y + ++ E+ T E VD+ +F Sbjct: 1 MKPSERRKARRLA-VQAIYSWQLSQNKVADVEHEFLT-----------EQNTDGVDVAYF 48 Query: 70 RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISE 129 R ++ GV + ID L+ L K F + + +I+R EL VP +V I+E Sbjct: 49 RELLTGVASKTSQIDELLKPHLDRK--FEEVSPVEKAIVRLATYELTFRKDVPFKVAINE 106 Query: 130 YVCIAHDFFYGDEPKFINAVLDKV 153 + +A F D KF+N +LDK+ Sbjct: 107 GIELAKAFGAEDSHKFVNGLLDKL 130 >gi|24374971|ref|NP_719014.1| transcription antitermination protein NusB [Shewanella oneidensis MR-1] gi|32171648|sp|Q8EBP4|NUSB_SHEON RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|24349697|gb|AAN56458.1|AE015783_1 N utilization substance protein B [Shewanella oneidensis MR-1] Length = 134 Score = 57.0 bits (136), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 48/148 (32%), Positives = 73/148 (49%), Gaps = 15/148 (10%) Query: 10 LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF 69 +K S RR RLA VQA+Y + G + ++ E+E F + LD VD+ +F Sbjct: 1 MKPSERRKARRLA-VQAIYSWQLSGNNIADV--EHE---FLTEQSLD------GVDVAYF 48 Query: 70 RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISE 129 R + GV +K +D LI L + + +I+R EL VP +V I+E Sbjct: 49 RELFAGVATKKTQLDELIIPHLDR--PIDEVSPVEKAIVRLAAYELTFRKDVPFKVAINE 106 Query: 130 YVCIAHDFFYGDEPKFINAVLDK-VSRK 156 + +A F + KF+N +LDK V+RK Sbjct: 107 AIELAKAFGADESHKFVNGLLDKLVARK 134 >gi|289706203|ref|ZP_06502566.1| transcription antitermination factor NusB [Micrococcus luteus SK58] gi|289557042|gb|EFD50370.1| transcription antitermination factor NusB [Micrococcus luteus SK58] Length = 150 Score = 57.0 bits (136), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 41/138 (29%), Positives = 68/138 (49%), Gaps = 14/138 (10%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 R +R AV+ L++ + G + E I T R ES L V+ + + ++ G Sbjct: 18 RSRSRQRAVEILFEAEQRGSTALEGI---RTRR---------ESTDLQVNA-YTQRLVEG 64 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135 V+ ++ +D +SS + WS R+ + +ILR G EL+ VP V ISE V +A Sbjct: 65 VIADQERLDEALSSY-SRGWSLDRMPAVDLAILRVGAWELLFQDDVPDAVAISEAVALAA 123 Query: 136 DFFYGDEPKFINAVLDKV 153 D P+F+N +L ++ Sbjct: 124 QLSTDDSPEFVNGLLGRL 141 >gi|190570484|ref|YP_001974842.1| N utilization substance protein B [Wolbachia endosymbiont of Culex quinquefasciatus Pel] gi|213019243|ref|ZP_03335050.1| N utilization substance protein B [Wolbachia endosymbiont of Culex quinquefasciatus JHB] gi|190356756|emb|CAQ54115.1| N utilization substance protein B [Wolbachia endosymbiont of Culex quinquefasciatus Pel] gi|212995352|gb|EEB55993.1| N utilization substance protein B [Wolbachia endosymbiont of Culex quinquefasciatus JHB] Length = 160 Score = 57.0 bits (136), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 50/158 (31%), Positives = 69/158 (43%), Gaps = 27/158 (17%) Query: 9 DLKLSHRRGIARLAAVQALYQ----------IDIIGCSTTEIISEYETYRFCADTELDVE 58 D K +R AR AVQ Y + C + IS + C + E Sbjct: 7 DKKWRIKRSTARFLAVQIAYSNIFVSYNKSTFKLENCELKDYISTLKDIFECEEFE---- 62 Query: 59 SVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIEC 118 H ++ ++ V+ + D +I S L WS SRL++I SILR V ELI+ Sbjct: 63 ----H---QFLENLLCKVIKSSEEYDKIIESYLHPSWSLSRLNLISLSILRIAVCELID- 114 Query: 119 HSVPVEVIISEYVCIAHDFFYGDEPK---FINAVLDKV 153 P ++I+EY IA D D P FIN +LDKV Sbjct: 115 FDTPAPIVINEYTNIASDLL--DAPNKIGFINGLLDKV 150 >gi|317047151|ref|YP_004114799.1| NusB antitermination factor [Pantoea sp. At-9b] gi|316948768|gb|ADU68243.1| NusB antitermination factor [Pantoea sp. At-9b] Length = 139 Score = 57.0 bits (136), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 42/132 (31%), Positives = 66/132 (50%), Gaps = 13/132 (9%) Query: 23 AVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQH 82 AVQALY + ++ Y+F A E DV+ V D+ +FR ++ GV + Sbjct: 13 AVQALYSWQLSNNDIADV-----EYQFLA--EQDVKDV----DISYFRELLSGVATNSAY 61 Query: 83 IDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDE 142 +D L+ L+ + L + +ILR + EL + VP +V I+E + +A F D Sbjct: 62 LDGLMKPYLSRQ--LEELGQVEKAILRISLFELSKRSDVPYKVAINEGIELAKVFGAEDS 119 Query: 143 PKFINAVLDKVS 154 KF+N VLDK + Sbjct: 120 HKFVNGVLDKAA 131 >gi|295695401|ref|YP_003588639.1| NusB antitermination factor [Bacillus tusciae DSM 2912] gi|295411003|gb|ADG05495.1| NusB antitermination factor [Bacillus tusciae DSM 2912] Length = 148 Score = 57.0 bits (136), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 35/138 (25%), Positives = 68/138 (49%), Gaps = 5/138 (3%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 R AR +QAL +D+ G E + + +R D E E D ++ R ++ G Sbjct: 3 RRAAREKVLQALVAVDLGGTDAEEALEQ--VWRLRGDEE--AEGDPSPEDADFARGLLFG 58 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135 ++ + +D ++ + T W R+ + ++LR V EL+ + PV V+++E V +A Sbjct: 59 TLEEGRRVDGVLRTYST-GWDLDRMASVDRNVLRLAVYELLHVPATPVSVVMNEAVELAK 117 Query: 136 DFFYGDEPKFINAVLDKV 153 + + +F+N VL ++ Sbjct: 118 RYSTEESGRFVNGVLARI 135 >gi|256379255|ref|YP_003102915.1| NusB antitermination factor [Actinosynnema mirum DSM 43827] gi|255923558|gb|ACU39069.1| NusB antitermination factor [Actinosynnema mirum DSM 43827] Length = 139 Score = 57.0 bits (136), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 41/139 (29%), Positives = 66/139 (47%), Gaps = 13/139 (9%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 R AR AV +Y+ D G ++S+ R + DV + E+ ++ G Sbjct: 4 RTKARKRAVDVIYEADQRGVDAVTLLSD----RVGS---TDVPPIN-----EYTVSLVEG 51 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135 V + ID LIS +E W+ R+ + ++LR G+ EL+ VP V I E V +A Sbjct: 52 VTAHRARIDDLISEH-SEGWTLQRMPAVDRAVLRVGLYELLWAADVPDAVAIDEAVELAK 110 Query: 136 DFFYGDEPKFINAVLDKVS 154 D P+F+N VL +++ Sbjct: 111 GLSTDDSPRFVNGVLGRIA 129 >gi|74318210|ref|YP_315950.1| NusB antitermination factor [Thiobacillus denitrificans ATCC 25259] gi|119390844|sp|Q3SGU8|NUSB_THIDA RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|74057705|gb|AAZ98145.1| NusB antitermination factor [Thiobacillus denitrificans ATCC 25259] Length = 145 Score = 57.0 bits (136), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 42/144 (29%), Positives = 67/144 (46%), Gaps = 13/144 (9%) Query: 12 LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71 ++ R +AR +Q +Y I G T I + L + + D +FR Sbjct: 1 MAGSRKVAREFTLQGIYAWMIGGADVTLIAAN-----------LKEDEQFKRADEAYFRT 49 Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131 +++GV+ + + I+ L + + L I SIL G EL+ C VP V I+E V Sbjct: 50 LLYGVLKEEDMLSSRIAPLLDR--AVAELSPIERSILLIGAYELLHCPDVPWRVAINESV 107 Query: 132 CIAHDFFYGDEPKFINAVLDKVSR 155 +A F D K+IN VLDK+++ Sbjct: 108 ELAKKFGGTDGHKYINGVLDKLAQ 131 >gi|146297126|ref|YP_001180897.1| NusB antitermination factor [Caldicellulosiruptor saccharolyticus DSM 8903] gi|254772620|sp|A4XLC1|NUSB_CALS8 RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|145410702|gb|ABP67706.1| NusB antitermination factor [Caldicellulosiruptor saccharolyticus DSM 8903] Length = 142 Score = 57.0 bits (136), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 34/121 (28%), Positives = 63/121 (52%), Gaps = 3/121 (2%) Query: 42 SEYETYRFCAD-TELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRL 100 +EY+ F EL+ + + +D E+ + ++ GV+ +Q ID LI ++ W SR+ Sbjct: 23 NEYDIIEFLNKFKELNPDENFKEIDEEYLKKLLTGVIRNQQLIDNLIEKY-SKDWPLSRI 81 Query: 101 DMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIK 160 M+ ++R + EL+ +P+ V I E V ++ F P F+N +L ++ E+K Sbjct: 82 PMVELELMRIAIYELLFEEEIPISVAIDEAVDLSSIFGVEKAPSFVNGILGSIAVN-EVK 140 Query: 161 R 161 R Sbjct: 141 R 141 >gi|68171632|ref|ZP_00544999.1| N utilization substance protein B, putative [Ehrlichia chaffeensis str. Sapulpa] gi|88658441|ref|YP_507582.1| putative N utilization substance protein B [Ehrlichia chaffeensis str. Arkansas] gi|67998953|gb|EAM85637.1| N utilization substance protein B, putative [Ehrlichia chaffeensis str. Sapulpa] gi|88599898|gb|ABD45367.1| putative N utilization substance protein B [Ehrlichia chaffeensis str. Arkansas] Length = 174 Score = 57.0 bits (136), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 41/139 (29%), Positives = 68/139 (48%), Gaps = 6/139 (4%) Query: 15 RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74 ++ R A+Q Y + I T I Y + LD+ + +D + I++ Sbjct: 14 KKTTTRFLAIQGTYSM-IFNNYTINDIDNLIDYLYEMKEVLDL----IQIDNQLLLKIMN 68 Query: 75 GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134 ++ I+ I++ L EKWS R+++I SI++ V ELI C +II+EYV IA Sbjct: 69 TMLLTFNTINSTIATFLNEKWSIDRINLISLSIIKTAVCELI-CSDTDAVIIINEYVNIA 127 Query: 135 HDFFYGDEPKFINAVLDKV 153 + FINA+L++V Sbjct: 128 SHILERTDVNFINAILNQV 146 >gi|89256034|ref|YP_513396.1| N utilisation substance protein B [Francisella tularensis subsp. holarctica LVS] gi|115314512|ref|YP_763235.1| N utilization substance protein B [Francisella tularensis subsp. holarctica OSU18] gi|156502045|ref|YP_001428109.1| transcription antitermination factor [Francisella tularensis subsp. holarctica FTNF002-00] gi|167010215|ref|ZP_02275146.1| transcription antitermination factor NusB [Francisella tularensis subsp. holarctica FSC200] gi|254367376|ref|ZP_04983402.1| N utilisation substance protein B [Francisella tularensis subsp. holarctica 257] gi|290953937|ref|ZP_06558558.1| transcription antitermination factor [Francisella tularensis subsp. holarctica URFT1] gi|295312686|ref|ZP_06803431.1| transcription antitermination factor [Francisella tularensis subsp. holarctica URFT1] gi|89143865|emb|CAJ79083.1| N utilisation substance protein B [Francisella tularensis subsp. holarctica LVS] gi|115129411|gb|ABI82598.1| N utilization substance protein B [Francisella tularensis subsp. holarctica OSU18] gi|134253192|gb|EBA52286.1| N utilisation substance protein B [Francisella tularensis subsp. holarctica 257] gi|156252648|gb|ABU61154.1| transcription antitermination factor [Francisella tularensis subsp. holarctica FTNF002-00] Length = 141 Score = 57.0 bits (136), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 47/147 (31%), Positives = 70/147 (47%), Gaps = 13/147 (8%) Query: 10 LKLSHR-RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEW 68 +K + R R ARL AVQALYQ I + +E+ +Y Y AD + D + Sbjct: 1 MKTTARARNNARLYAVQALYQKKIADNTFSELKIQY--YADNADRH--------YTDWDL 50 Query: 69 FRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIIS 128 F +I V + ID I + ++ + +L+ + ELIEC P +VII Sbjct: 51 FYRLIDAVKTNQDTIDKYIKENSSN--GVESINYVDYVVLQVAIAELIECLENPYQVIIK 108 Query: 129 EYVCIAHDFFYGDEPKFINAVLDKVSR 155 EYV I + + KFINAVL +++ Sbjct: 109 EYVEICYSMGTEEGYKFINAVLQNLAK 135 >gi|294501203|ref|YP_003564903.1| transcription antitermination factor NusB [Bacillus megaterium QM B1551] gi|295706550|ref|YP_003599625.1| transcription antitermination factor NusB [Bacillus megaterium DSM 319] gi|294351140|gb|ADE71469.1| transcription antitermination factor NusB [Bacillus megaterium QM B1551] gi|294804209|gb|ADF41275.1| transcription antitermination factor NusB [Bacillus megaterium DSM 319] Length = 130 Score = 57.0 bits (136), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 41/139 (29%), Positives = 65/139 (46%), Gaps = 16/139 (11%) Query: 15 RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74 +R AR A+QAL+Q D+ E I + + D ++ ++ Sbjct: 2 KRHTARQKALQALFQHDLGQTEPMEAIG-----NVVQNEKSD----------QFLESLVL 46 Query: 75 GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134 GV++ +Q ID L+ + L EKW+ R+ + ILR V E+ +P V ++E + +A Sbjct: 47 GVVEHQQEIDELLRNHL-EKWTLDRVATVDRVILRIAVYEMKYEEEIPTSVTLNEAIELA 105 Query: 135 HDFFYGDEPKFINAVLDKV 153 F KFIN VL KV Sbjct: 106 KTFGDDQSSKFINGVLSKV 124 >gi|304395478|ref|ZP_07377361.1| NusB antitermination factor [Pantoea sp. aB] gi|304356772|gb|EFM21136.1| NusB antitermination factor [Pantoea sp. aB] Length = 139 Score = 57.0 bits (136), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 42/132 (31%), Positives = 66/132 (50%), Gaps = 13/132 (9%) Query: 23 AVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQH 82 AVQALY + ++ Y+F A E DV+ V D+ +FR ++ GV + Sbjct: 13 AVQALYSWQLSNNDIADV-----EYQFLA--EQDVKDV----DITYFRELLSGVATNSAY 61 Query: 83 IDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDE 142 +D L+ L+ + L + +ILR + EL + + VP +V I+E + +A F D Sbjct: 62 LDGLMKPYLSRQ--LEELGQVEKAILRISLYELSKRNDVPYKVAINEGIELAKVFGAEDS 119 Query: 143 PKFINAVLDKVS 154 KF+N VLDK Sbjct: 120 HKFVNGVLDKAG 131 >gi|239939930|ref|ZP_04691867.1| transcription antitermination protein NusB [Streptomyces roseosporus NRRL 15998] gi|239986415|ref|ZP_04707079.1| transcription antitermination protein NusB [Streptomyces roseosporus NRRL 11379] gi|291443361|ref|ZP_06582751.1| transcription antitermination protein NusB [Streptomyces roseosporus NRRL 15998] gi|291346308|gb|EFE73212.1| transcription antitermination protein NusB [Streptomyces roseosporus NRRL 15998] Length = 143 Score = 57.0 bits (136), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 37/135 (27%), Positives = 60/135 (44%), Gaps = 9/135 (6%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 R AR A Q L++ D G S +++++ + D + V + ++ G Sbjct: 4 RNKARKRAFQILFEADQRGASVQSVLADWVRHSRTDDRQPPVGEFTME--------LVEG 55 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135 ID LI + + W R+ ++ +ILR G ELI P V+I E V +A Sbjct: 56 YAQYADRIDDLIVTYAVD-WEIDRMPVVDRNILRLGAYELIWMDETPDAVVIDEAVQLAK 114 Query: 136 DFFYGDEPKFINAVL 150 +F D P F+N +L Sbjct: 115 EFSTDDSPSFVNGLL 129 >gi|83590364|ref|YP_430373.1| NusB antitermination factor [Moorella thermoacetica ATCC 39073] gi|119390785|sp|Q2RIA9|NUSB_MOOTA RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|83573278|gb|ABC19830.1| NusB antitermination factor [Moorella thermoacetica ATCC 39073] Length = 145 Score = 57.0 bits (136), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 37/140 (26%), Positives = 65/140 (46%), Gaps = 12/140 (8%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 R AR A+QAL+ ID+ G S + + + EL + + + R ++ G Sbjct: 3 RRAARAKALQALFAIDVGGTSPDMALEQ-----VLEEGELPPRA------MTFTRELVEG 51 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135 M ++ ID +I W RL + +ILR + E+ PV V+I+E + +A Sbjct: 52 TMAKRDAIDAIIRKYAV-GWRLERLAAVDRNILRMALYEMQYHRETPVRVVINEAIELAK 110 Query: 136 DFFYGDEPKFINAVLDKVSR 155 +F + +F+N +LD + Sbjct: 111 NFNNEEAGRFVNGLLDNARK 130 >gi|282866212|ref|ZP_06275259.1| NusB antitermination factor [Streptomyces sp. ACTE] gi|282558996|gb|EFB64551.1| NusB antitermination factor [Streptomyces sp. ACTE] Length = 143 Score = 57.0 bits (136), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 39/135 (28%), Positives = 60/135 (44%), Gaps = 9/135 (6%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 R AR A Q L++ D G S +++++ D + V + ++ G Sbjct: 4 RNKARKRAFQILFEADQRGESVQTVLADWVRLSRTDDRQPPVGEFTME--------LVEG 55 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135 ID LI + + W R+ ++ SILR G ELI S P V+I E V +A Sbjct: 56 YAQYADRIDDLIVTYAVD-WEIDRMPVVDRSILRLGAYELIWMDSTPDAVVIDEAVQLAK 114 Query: 136 DFFYGDEPKFINAVL 150 +F D P F+N +L Sbjct: 115 EFSTDDSPSFVNGLL 129 >gi|157374416|ref|YP_001473016.1| transcription antitermination protein NusB [Shewanella sediminis HAW-EB3] gi|189035907|sp|A8FSR5|NUSB_SHESH RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|157316790|gb|ABV35888.1| NusB antitermination factor [Shewanella sediminis HAW-EB3] Length = 134 Score = 57.0 bits (136), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 45/148 (30%), Positives = 74/148 (50%), Gaps = 15/148 (10%) Query: 10 LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF 69 +K S RR RLA VQA+Y + G + ++ E+E F + ++D +D+ +F Sbjct: 1 MKPSERRKARRLA-VQAIYSWQLSGNNIADV--EHE---FLTEQKID------GIDVAYF 48 Query: 70 RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISE 129 R ++ G ++ ID I + ++ + I ++LR EL VP +V I+E Sbjct: 49 RELLSGTATKQAQIDEQIIPHIER--PYNEVSPIEKAVLRLATYELTFRKDVPYKVAINE 106 Query: 130 YVCIAHDFFYGDEPKFINAVLDK-VSRK 156 + +A F D KF+N +LDK V RK Sbjct: 107 AIELAKAFGAEDGHKFVNGILDKIVGRK 134 >gi|58584450|ref|YP_198023.1| transcription termination factor, NusB [Wolbachia endosymbiont strain TRS of Brugia malayi] gi|58418766|gb|AAW70781.1| Transcription termination factor, NusB [Wolbachia endosymbiont strain TRS of Brugia malayi] Length = 160 Score = 57.0 bits (136), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 44/151 (29%), Positives = 67/151 (44%), Gaps = 7/151 (4%) Query: 15 RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74 +R AR AVQ Y +G + E R D+ D ++ +++ Sbjct: 13 KRSAARFLAVQVAYSNIFMGYDKSTFELENCGLRNYVGKLADIFECE-EFDYQFLEKLLY 71 Query: 75 GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134 V+ D +I L WS RL+++ SILR V EL C + P V+I+EY IA Sbjct: 72 KVIRSGGEYDKIIEYYLHPSWSLLRLNLVSLSILRVAVCELANCDT-PAPVVINEYTNIA 130 Query: 135 HDFFYGDEPK---FINAVLDKVSRKEEIKRS 162 D D+P FIN +LDK ++ ++ Sbjct: 131 SDLL--DKPSEIGFINGLLDKAKSAVKLNKN 159 >gi|85711195|ref|ZP_01042255.1| Transcription termination factor NusB [Idiomarina baltica OS145] gi|85695108|gb|EAQ33046.1| Transcription termination factor NusB [Idiomarina baltica OS145] Length = 139 Score = 57.0 bits (136), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 44/144 (30%), Positives = 70/144 (48%), Gaps = 14/144 (9%) Query: 10 LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF 69 +K + RR AR AVQA+Y + + EI ++ F D + VD+++F Sbjct: 1 MKPAARRK-ARKLAVQAVYSWQLSQNTFNEIEAQ-----FLTDNDTS------KVDVDYF 48 Query: 70 RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISE 129 ++ GV + +D I+ L S LD + ++LR EL E + VP +V I+E Sbjct: 49 LELLRGVGAFYKSLDEAIAPYLDR--PISELDPVELAVLRIAAYELRERYDVPYKVAINE 106 Query: 130 YVCIAHDFFYGDEPKFINAVLDKV 153 + +A F D +F+N VLDK Sbjct: 107 AIELAKSFGADDSHRFVNGVLDKA 130 >gi|237785587|ref|YP_002906292.1| N utilization substance protein B [Corynebacterium kroppenstedtii DSM 44385] gi|237758499|gb|ACR17749.1| N utilization substance protein B [Corynebacterium kroppenstedtii DSM 44385] Length = 192 Score = 57.0 bits (136), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 33/107 (30%), Positives = 57/107 (53%), Gaps = 3/107 (2%) Query: 56 DVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLEL 115 D ES L V ++ I+ GV + ID I+S L+ W R+ + +++R EL Sbjct: 83 DSESGVLPVS-DYTATIVSGVAENLDGIDSAIASHLSSTWRLDRIPAVDRAVMRVSTWEL 141 Query: 116 IECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRS 162 + VP +V +SE + +A ++ P ++NAVLD ++ E++RS Sbjct: 142 LHNEEVPPKVAVSEGIELASEYSTDVAPAYVNAVLDDIA--GEVQRS 186 >gi|224534018|ref|ZP_03674602.1| transcription antitermination factor NusB [Borrelia burgdorferi CA-11.2a] gi|224512854|gb|EEF83221.1| transcription antitermination factor NusB [Borrelia burgdorferi CA-11.2a] Length = 145 Score = 56.6 bits (135), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 41/140 (29%), Positives = 67/140 (47%), Gaps = 9/140 (6%) Query: 20 RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79 R+ A Q +Y IDI + +I + D +LD+E+ + ++ ++ G + Sbjct: 8 RVLAFQKIYSIDINQSAMDDIFDIFN----IEDKDLDIENESIK---SFYSSLVIGTFNN 60 Query: 80 KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLEL-IECHSVPVEVIISEYVCIAHDFF 138 +HID LI ++ WS R+D + +ILR GV L E II E + IA + Sbjct: 61 LEHIDSLIRD-ISLNWSLERMDKVDLAILRMGVYSLKFENFENSKRAIIDEAILIAKKYG 119 Query: 139 YGDEPKFINAVLDKVSRKEE 158 + KFIN +LD + + E Sbjct: 120 SKNSYKFINGILDALLKNME 139 >gi|88801237|ref|ZP_01116776.1| transcription antitermination protein NusB [Reinekea sp. MED297] gi|88776023|gb|EAR07259.1| transcription antitermination protein NusB [Reinekea sp. MED297] Length = 151 Score = 56.6 bits (135), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 44/144 (30%), Positives = 69/144 (47%), Gaps = 21/144 (14%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 R AR A+QALYQ + S T+I +E F D ++ D ++F ++ G Sbjct: 11 RRKARRLAMQALYQWHVADQSVTQIEAE-----FLTDNDVS------KFDKDYFSEVLRG 59 Query: 76 VMDRKQ----HIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131 V K H+D I L + L + +ILR G E + VP +VII+E V Sbjct: 60 VAASKSELDSHVDKHIDRALKD------LTPVELAILRMGAYEFLHRIDVPYKVIINEGV 113 Query: 132 CIAHDFFYGDEPKFINAVLDKVSR 155 ++ F + +F+N VLDK+++ Sbjct: 114 ELSKTFGANEAHRFVNGVLDKLAQ 137 >gi|328954274|ref|YP_004371608.1| NusB antitermination factor [Desulfobacca acetoxidans DSM 11109] gi|328454598|gb|AEB10427.1| NusB antitermination factor [Desulfobacca acetoxidans DSM 11109] Length = 142 Score = 56.6 bits (135), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 39/147 (26%), Positives = 69/147 (46%), Gaps = 12/147 (8%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 + +AR A+Q LYQI+I G + + + F ++ + S Y H ++ G Sbjct: 6 KSLARERALQCLYQIEITGREVEGAAALFWEH-FHSE---ERNSAYFHR-------LVAG 54 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135 V + +D IS ++ W R+ + +ILR + EL+ C VP +V+++E V + Sbjct: 55 VRGHCEELDAYISR-FSQHWRLERMASVDRNILRLAIFELLHCPEVPPKVVVNEAVELGK 113 Query: 136 DFFYGDEPKFINAVLDKVSRKEEIKRS 162 F + FIN +LD + + R Sbjct: 114 RFGAENSGAFINGILDSFLKARQPDRG 140 >gi|319762696|ref|YP_004126633.1| transcription antitermination factor nusb [Alicycliphilus denitrificans BC] gi|317117257|gb|ADU99745.1| transcription antitermination factor NusB [Alicycliphilus denitrificans BC] Length = 181 Score = 56.6 bits (135), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 41/141 (29%), Positives = 69/141 (48%), Gaps = 13/141 (9%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 R AR A+QALYQ + G T I F D S + D + ++HG Sbjct: 38 RSRAREFALQALYQHLVGGNDATAID------LFTRDL-----SGFHKADAAHYDALLHG 86 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135 ++ +QH+D LI+ L K + + I +++ GV E C VP V+I+E + +A Sbjct: 87 CIETEQHMDALIAPLLDRK--MAEISPIEHAVMWIGVYEFQHCPDVPWRVVINECIELAK 144 Query: 136 DFFYGDEPKFINAVLDKVSRK 156 +F D K++N +L+ ++ + Sbjct: 145 EFGGTDGHKYVNGILNGLAPQ 165 >gi|253699860|ref|YP_003021049.1| NusB antitermination factor [Geobacter sp. M21] gi|259514841|sp|C6E3M6|NUSB_GEOSM RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|251774710|gb|ACT17291.1| NusB antitermination factor [Geobacter sp. M21] Length = 145 Score = 56.6 bits (135), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 42/145 (28%), Positives = 73/145 (50%), Gaps = 12/145 (8%) Query: 13 SHRRGIARLAAVQALYQIDII---GCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF 69 + R G R A+QALY D++ ST + I+E ++ + L V S E Sbjct: 3 TRREG--RELALQALYSKDLVLQDANSTLKRITE--SFSEGEEPTLSVNSKAYAFASE-- 56 Query: 70 RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISE 129 +++GV+ Q ID I+ ++ WS +R+ + +ILR V EL+ +P V ++E Sbjct: 57 --LVNGVVSNLQQIDSRIAEK-SKHWSMARMARVDLNILRLAVFELLYRPDIPKNVTMNE 113 Query: 130 YVCIAHDFFYGDEPKFINAVLDKVS 154 + +A F D F+N +LD+++ Sbjct: 114 AIEVAKKFGADDSASFVNGILDEIA 138 >gi|218249233|ref|YP_002374635.1| transcription antitermination factor NusB [Borrelia burgdorferi ZS7] gi|226321982|ref|ZP_03797507.1| transcription antitermination factor NusB [Borrelia burgdorferi Bol26] gi|218164421|gb|ACK74482.1| transcription antitermination factor NusB [Borrelia burgdorferi ZS7] gi|226232572|gb|EEH31326.1| transcription antitermination factor NusB [Borrelia burgdorferi Bol26] gi|312148021|gb|ADQ30680.1| transcription antitermination factor NusB [Borrelia burgdorferi JD1] Length = 142 Score = 56.6 bits (135), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 41/140 (29%), Positives = 67/140 (47%), Gaps = 9/140 (6%) Query: 20 RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79 R+ A Q +Y IDI + +I + D +LD+E+ + ++ ++ G + Sbjct: 5 RVLAFQKIYSIDINQSAMDDIFDIFN----IEDKDLDIENESIK---SFYSSLVIGTFNN 57 Query: 80 KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLEL-IECHSVPVEVIISEYVCIAHDFF 138 +HID LI ++ WS R+D + +ILR GV L E II E + IA + Sbjct: 58 LEHIDSLIRD-ISLNWSLERMDKVDLAILRMGVYSLKFENFENSKRAIIDEAILIAKKYG 116 Query: 139 YGDEPKFINAVLDKVSRKEE 158 + KFIN +LD + + E Sbjct: 117 SKNSYKFINGILDALLKNME 136 >gi|15602595|ref|NP_245667.1| transcription antitermination protein NusB [Pasteurella multocida subsp. multocida str. Pm70] gi|13431742|sp|P57868|NUSB_PASMU RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|12721025|gb|AAK02814.1| NusB [Pasteurella multocida subsp. multocida str. Pm70] Length = 144 Score = 56.6 bits (135), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 53/154 (34%), Positives = 75/154 (48%), Gaps = 16/154 (10%) Query: 1 MTIQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESV 60 MT Q ++K K+S RR AR AVQALY + S EI F A+ +L Sbjct: 1 MTEQKHEK--KISPRRR-ARECAVQALYSWYVSQNSPAEI-----ELNFMAEQDLK---- 48 Query: 61 YLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHS 120 VD +FR + + +D ++ L + S LD I +ILR V EL Sbjct: 49 --GVDTAYFRRLFRQTAENVDAVDNIMIPYLDRE--VSELDPIEKAILRLAVYELKFELD 104 Query: 121 VPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVS 154 VP +V+I+E + +A F D K++N VLDKV+ Sbjct: 105 VPYKVVINEAIEVAKVFGAEDSHKYVNGVLDKVA 138 >gi|281491193|ref|YP_003353173.1| transcription antitermination factor [Lactococcus lactis subsp. lactis KF147] gi|281374934|gb|ADA64452.1| Transcription antitermination factor [Lactococcus lactis subsp. lactis KF147] Length = 323 Score = 56.6 bits (135), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 29/84 (34%), Positives = 50/84 (59%), Gaps = 1/84 (1%) Query: 67 EWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVI 126 E+F ++ GV+D+K+ ++ IS L + WSFSRL ++ +IL+ E++ + P V Sbjct: 236 EYFTQLVDGVLDKKEDLEANISKYLAKTWSFSRLTLVEQAILQVSSYEILYTET-PDVVA 294 Query: 127 ISEYVCIAHDFFYGDEPKFINAVL 150 ++E V ++ DF +FIN VL Sbjct: 295 VNEAVELSKDFSDEKSSRFINGVL 318 >gi|260913902|ref|ZP_05920376.1| transcription termination/antitermination factor NusB [Pasteurella dagmatis ATCC 43325] gi|260631989|gb|EEX50166.1| transcription termination/antitermination factor NusB [Pasteurella dagmatis ATCC 43325] Length = 144 Score = 56.6 bits (135), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 47/144 (32%), Positives = 73/144 (50%), Gaps = 14/144 (9%) Query: 11 KLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFR 70 K+S RR AR AVQALY + S EI E F A+ +L VD+ +FR Sbjct: 9 KVSPRRR-ARECAVQALYSWYVSQNSPAEIELE-----FVAEQDLK------GVDVPYFR 56 Query: 71 VIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEY 130 + ++ + +D++++ L + +D I +ILR V EL VP +V+I+E Sbjct: 57 KLFRQTVENVETVDVIMAPYLDR--DVNEVDPIEKAILRLAVYELKFELDVPYKVVINEA 114 Query: 131 VCIAHDFFYGDEPKFINAVLDKVS 154 + + F D K++N VLDKV+ Sbjct: 115 IEVTKVFGADDSHKYVNGVLDKVA 138 >gi|332184492|gb|AEE26746.1| Transcription termination protein NusB [Francisella cf. novicida 3523] Length = 141 Score = 56.6 bits (135), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 45/147 (30%), Positives = 70/147 (47%), Gaps = 13/147 (8%) Query: 10 LKLSHR-RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEW 68 +K + R R ARL VQALYQ + + E+ +Y Y AD + D + Sbjct: 1 MKTTARARNNARLYTVQALYQKRVADNTFAELKVQY--YADNADRH--------YTDWDL 50 Query: 69 FRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIIS 128 F +I V + ID I + ++ + ++L+A + ELIEC P +VII Sbjct: 51 FYRLIDAVKSNQDIIDKYIQE--NSNNGVASINYVDYAVLQAAIAELIECLENPYQVIIK 108 Query: 129 EYVCIAHDFFYGDEPKFINAVLDKVSR 155 EYV I + + KF+NAVL +++ Sbjct: 109 EYVEICYSMGTEEGYKFVNAVLQNLAK 135 >gi|198282617|ref|YP_002218938.1| NusB antitermination factor [Acidithiobacillus ferrooxidans ATCC 53993] gi|218667110|ref|YP_002424808.1| transcription antitermination factor NusB [Acidithiobacillus ferrooxidans ATCC 23270] gi|198247138|gb|ACH82731.1| NusB antitermination factor [Acidithiobacillus ferrooxidans ATCC 53993] gi|218519323|gb|ACK79909.1| transcription antitermination factor NusB [Acidithiobacillus ferrooxidans ATCC 23270] Length = 147 Score = 56.6 bits (135), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 44/147 (29%), Positives = 72/147 (48%), Gaps = 11/147 (7%) Query: 10 LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF 69 +K+S RR +AR AAVQALYQ + EI +F +D E D+ +F Sbjct: 1 MKISRRR-LARQAAVQALYQWQMNPGHCAEI-----ELQFTSDPER-----LQGADVAFF 49 Query: 70 RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISE 129 + + GV +D I+ + ++ + + +ILR EL + P VII+E Sbjct: 50 KSLWQGVCAAISELDPAIAEEVQDRRWADEVSEVERAILRLAACELRDYPQTPYRVIINE 109 Query: 130 YVCIAHDFFYGDEPKFINAVLDKVSRK 156 + + DF +F+NAVLDK++++ Sbjct: 110 AIELDKDFGGEQGHRFVNAVLDKLAQR 136 >gi|291616524|ref|YP_003519266.1| NusB [Pantoea ananatis LMG 20103] gi|291151554|gb|ADD76138.1| NusB [Pantoea ananatis LMG 20103] Length = 139 Score = 56.6 bits (135), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 43/139 (30%), Positives = 68/139 (48%), Gaps = 13/139 (9%) Query: 23 AVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQH 82 AVQALY + ++ Y+F A E DV+ V D+ +FR ++ GV + Sbjct: 13 AVQALYSWQLSNNDIADV-----EYQFLA--EQDVKDV----DITYFRELLSGVATNSAY 61 Query: 83 IDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDE 142 +D L+ L+ + L + +ILR + EL + VP +V I+E + +A F D Sbjct: 62 LDGLMKPYLSRQ--LEELGQVEKAILRVSLYELSKRSDVPYKVAINEGIELAKVFGAEDS 119 Query: 143 PKFINAVLDKVSRKEEIKR 161 KF+N VLDK + +R Sbjct: 120 HKFVNGVLDKAGPQIRPQR 138 >gi|52425030|ref|YP_088167.1| transcription antitermination protein NusB [Mannheimia succiniciproducens MBEL55E] gi|81609560|sp|Q65TX8|NUSB_MANSM RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|52307082|gb|AAU37582.1| NusB protein [Mannheimia succiniciproducens MBEL55E] Length = 143 Score = 56.6 bits (135), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 52/156 (33%), Positives = 74/156 (47%), Gaps = 21/156 (13%) Query: 1 MTIQDNKKDLKLSHRRGIARLAAVQALY--QIDIIGCSTTEIISEYETYRFCADTELDVE 58 MT Q K+ S RR AR AVQALY QI T E+ F D ++ Sbjct: 1 MTEQVKKRP---SPRRR-ARECAVQALYSFQISQNPVETVEL-------SFVTDQDMK-- 47 Query: 59 SVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIEC 118 VD+ +FR + ++ +D ++ L S + LD I +ILR V EL Sbjct: 48 ----GVDMPYFRKLFRQTVENIPSVDSTMAPYLDR--SANELDPIEKAILRLAVYELKYE 101 Query: 119 HSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVS 154 VP +V+I+E + +A F D K+IN VLDK++ Sbjct: 102 LDVPYKVVINEAIEVAKTFGAEDSHKYINGVLDKIA 137 >gi|114319541|ref|YP_741224.1| NusB antitermination factor [Alkalilimnicola ehrlichii MLHE-1] gi|119372274|sp|Q0ABQ3|NUSB_ALHEH RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|114225935|gb|ABI55734.1| NusB antitermination factor [Alkalilimnicola ehrlichii MLHE-1] Length = 178 Score = 56.6 bits (135), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 34/97 (35%), Positives = 49/97 (50%), Gaps = 4/97 (4%) Query: 61 YLH--VDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIEC 118 Y H +D +FR ++HGV R +D + L LD + ++LR G EL E Sbjct: 66 YPHDGLDRPYFRALLHGVPARLNDLDQALEPLLDR--PLRTLDPLEKALLRLGAWELSER 123 Query: 119 HSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSR 155 P VII+E V +A F ++IN VLDK++R Sbjct: 124 MDTPWRVIINEAVNLAKRFGAEQSHRYINGVLDKLAR 160 >gi|254522951|ref|ZP_05135006.1| transcription antitermination factor NusB [Stenotrophomonas sp. SKA14] gi|219720542|gb|EED39067.1| transcription antitermination factor NusB [Stenotrophomonas sp. SKA14] Length = 159 Score = 56.6 bits (135), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 40/139 (28%), Positives = 64/139 (46%), Gaps = 13/139 (9%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 R AR AVQALY I G + +I++ F + ++ DL +F ++HG Sbjct: 24 RSRARRRAVQALYAWQISGGNAQSLIAQ-----FAHEQAREI------ADLAYFEALVHG 72 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135 V+D ++ ID + L +D I ++LR EL VP V+I+E + A Sbjct: 73 VLDNRRDIDEALGPYLDR--GIEEVDAIERAVLRLAGYELRYRLDVPYRVVINEAIESAK 130 Query: 136 DFFYGDEPKFINAVLDKVS 154 F ++N VLD+ + Sbjct: 131 RFGSEHGHTYVNGVLDRAA 149 >gi|307718673|ref|YP_003874205.1| N-utilization substance protein B [Spirochaeta thermophila DSM 6192] gi|306532398|gb|ADN01932.1| N-utilization substance protein B [Spirochaeta thermophila DSM 6192] gi|315185797|gb|EFU19563.1| NusB antitermination factor [Spirochaeta thermophila DSM 6578] Length = 136 Score = 56.6 bits (135), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 45/137 (32%), Positives = 62/137 (45%), Gaps = 12/137 (8%) Query: 19 ARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMD 78 AR+ A QAL+ D G E+ S AD E+ E V L ++ G ++ Sbjct: 7 ARILAFQALFASDGGGGDGLEVFSFP-----WADGEIP-EEVRTFAQL-----LLRGTLE 55 Query: 79 RKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFF 138 +D LI L E W F R+ +ILR V L+ +P VII E V IA F Sbjct: 56 HLPEVDDLIKKHL-EHWDFGRIARTDRAILRMSVYALLYQKEIPARVIIDEAVEIAKQFG 114 Query: 139 YGDEPKFINAVLDKVSR 155 D +F+N VLD + + Sbjct: 115 TQDSYRFVNGVLDAIRK 131 >gi|295677368|ref|YP_003605892.1| NusB antitermination factor [Burkholderia sp. CCGE1002] gi|295437211|gb|ADG16381.1| NusB antitermination factor [Burkholderia sp. CCGE1002] Length = 144 Score = 56.6 bits (135), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 43/145 (29%), Positives = 63/145 (43%), Gaps = 15/145 (10%) Query: 10 LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF 69 +K + RR +R A Q LYQ + G EI D +L Y D E Sbjct: 1 MKSARRR--SRELATQGLYQWLLSGSPGGEI-----------DAQLRGAQGYDKADHEHL 47 Query: 70 RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISE 129 I+HGVM + + I+ CL +L + ++L EL +P V+I+E Sbjct: 48 DAILHGVMRDSEELSAAIAPCLDR--PIDQLSPVERAVLLVAAFELKNHVDIPYRVVINE 105 Query: 130 YVCIAHDFFYGDEPKFINAVLDKVS 154 V + F D K++N VLDK+S Sbjct: 106 AVELTKTFGGSDGYKYVNGVLDKLS 130 >gi|225174889|ref|ZP_03728886.1| NusB antitermination factor [Dethiobacter alkaliphilus AHT 1] gi|225169529|gb|EEG78326.1| NusB antitermination factor [Dethiobacter alkaliphilus AHT 1] Length = 138 Score = 56.6 bits (135), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 40/145 (27%), Positives = 68/145 (46%), Gaps = 12/145 (8%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 R +AR A + L+Q DI IS+ L E+ +E+ R ++ G Sbjct: 3 RRLAREIAFKTLFQYDIGKNEVEPTISQ-----------LIEENGLEGAGVEFSRQLVLG 51 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135 + + ID ++ L +KW RL + ++LR E++ +P V I+E + ++ Sbjct: 52 TLKNLEAIDKALAGYL-QKWELGRLAAVDRNVLRLAAFEILYREDIPAAVTINEALELSK 110 Query: 136 DFFYGDEPKFINAVLDKVSRKEEIK 160 F + KF+N VLDK++R E K Sbjct: 111 AFHSEEAAKFLNGVLDKLARHHEGK 135 >gi|72161498|ref|YP_289155.1| transcription antitermination protein NusB [Thermobifida fusca YX] gi|119390842|sp|Q47QY5|NUSB_THEFY RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|71915230|gb|AAZ55132.1| NusB antitermination factor [Thermobifida fusca YX] Length = 142 Score = 56.6 bits (135), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 42/148 (28%), Positives = 72/148 (48%), Gaps = 17/148 (11%) Query: 13 SHRRGI---ARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF 69 S RRG AR+ AV+ LY+ ++ G +E+I R A TE + E+ Sbjct: 4 SRRRGSRHKARVRAVEILYEAEVRGVPVSEVIE-----RRRAQTEPPIN--------EFT 50 Query: 70 RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISE 129 + V + + ID L+ + W+ R+ ++ +ILR GV EL+ +P V I+E Sbjct: 51 EQLATRVDEHRARIDELLETYAI-GWTLDRMPVVDRNILRIGVYELLWADDIPDGVAIAE 109 Query: 130 YVCIAHDFFYGDEPKFINAVLDKVSRKE 157 V +A + + P F+N +L ++ K+ Sbjct: 110 AVAMAKELSTDESPVFVNGLLSRLMEKK 137 >gi|78187533|ref|YP_375576.1| NusB antitermination factor [Chlorobium luteolum DSM 273] gi|119390794|sp|Q3B298|NUSB_PELLD RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|78167435|gb|ABB24533.1| NusB antitermination factor [Chlorobium luteolum DSM 273] Length = 163 Score = 56.6 bits (135), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 32/101 (31%), Positives = 58/101 (57%), Gaps = 4/101 (3%) Query: 66 LEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEV 125 +++F +++ + D ++ ID I++ T W SR+ +I +ILR + EL+ C +P +V Sbjct: 45 MKFFNLLLKSIKDNREEIDRYIAAH-TFNWDMSRIAIIDKNILRMALAELLYCEDIPPKV 103 Query: 126 IISEYVCIAHDFFYGDE-PKFINAVLDKVSRKEEIKRSGCV 165 I+E + IA F D+ KF+N +LD + E+K G + Sbjct: 104 SINEAIEIAKKFNSTDKSSKFVNGILDAIFN--ELKTEGKI 142 >gi|225869862|ref|YP_002745809.1| N utilization substance protein B homolog (NusB protein) [Streptococcus equi subsp. equi 4047] gi|254772656|sp|C0MBK2|NUSB_STRE4 RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|225699266|emb|CAW92587.1| N utilization substance protein B homolog (NusB protein) [Streptococcus equi subsp. equi 4047] Length = 150 Score = 56.6 bits (135), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 39/139 (28%), Positives = 63/139 (45%), Gaps = 6/139 (4%) Query: 12 LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71 H R R A QAL+ +++ G Y+ + AD + E ++L Sbjct: 5 FQHSRRDLRERAFQALFAMEMGGDFLPASQFAYDYDKEAADDKQPSELPVFLLNL----- 59 Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131 ++GVMD K +D +I L WS RL ++ ++LR G+ E+ P V ++E + Sbjct: 60 -VNGVMDHKAELDEVIKKNLKTSWSIERLTVVDKTMLRLGLFEMTLFEETPDRVALNEII 118 Query: 132 CIAHDFFYGDEPKFINAVL 150 IA + KFIN +L Sbjct: 119 EIAKKYSDDTSAKFINGLL 137 >gi|229019401|ref|ZP_04176224.1| N utilization substance protein B [Bacillus cereus AH1273] gi|229025645|ref|ZP_04182051.1| N utilization substance protein B [Bacillus cereus AH1272] gi|229098654|ref|ZP_04229594.1| N utilization substance protein B [Bacillus cereus Rock3-29] gi|229104810|ref|ZP_04235471.1| N utilization substance protein B [Bacillus cereus Rock3-28] gi|229117679|ref|ZP_04247049.1| N utilization substance protein B [Bacillus cereus Rock1-3] gi|228665771|gb|EEL21243.1| N utilization substance protein B [Bacillus cereus Rock1-3] gi|228678683|gb|EEL32899.1| N utilization substance protein B [Bacillus cereus Rock3-28] gi|228684733|gb|EEL38671.1| N utilization substance protein B [Bacillus cereus Rock3-29] gi|228735643|gb|EEL86232.1| N utilization substance protein B [Bacillus cereus AH1272] gi|228741871|gb|EEL92048.1| N utilization substance protein B [Bacillus cereus AH1273] Length = 120 Score = 56.6 bits (135), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 44/132 (33%), Positives = 63/132 (47%), Gaps = 18/132 (13%) Query: 24 VQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHI 83 +QALYQ+DI G E E +T + E E+ ++ G +D K+ I Sbjct: 1 MQALYQMDITG--------ELEPKVAVENTLDEGEETN-----EFLESLVVGFVDNKEEI 47 Query: 84 DLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEP 143 D I L +KW R+ ++ SILR V E+ +P V I+E + IA F GDE Sbjct: 48 DAAIRQNL-KKWKLERISIVDRSILRVAVYEMKYMEEIPHNVTINEAIEIAKTF--GDEE 104 Query: 144 --KFINAVLDKV 153 +FIN VL + Sbjct: 105 SRRFINGVLSNI 116 >gi|224531581|ref|ZP_03672213.1| transcription antitermination factor NusB [Borrelia valaisiana VS116] gi|224511046|gb|EEF81452.1| transcription antitermination factor NusB [Borrelia valaisiana VS116] Length = 145 Score = 56.2 bits (134), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 39/140 (27%), Positives = 67/140 (47%), Gaps = 9/140 (6%) Query: 20 RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79 R+ A Q +Y IDI + +I + D LD+E+ + ++ +++G + Sbjct: 8 RVLAFQKIYSIDINQSAMDDIFDIFN----IEDKGLDIENESIK---SFYSSLVNGTFNN 60 Query: 80 KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLEL-IECHSVPVEVIISEYVCIAHDFF 138 +HID LI ++ WS R+D + +ILR GV L + +I E + IA + Sbjct: 61 LEHIDNLIRD-ISLNWSLDRMDKVDLAILRMGVYSLKFQNFENSKRAVIDEAILIAKKYG 119 Query: 139 YGDEPKFINAVLDKVSRKEE 158 + KFIN +LD + + E Sbjct: 120 SKNSYKFINGILDALLKNME 139 >gi|225869187|ref|YP_002745135.1| N utilization substance protein B homolog (NusB protein) [Streptococcus equi subsp. zooepidemicus] gi|259514901|sp|C0MED0|NUSB_STRS7 RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|225702463|emb|CAX00364.1| N utilization substance protein B homolog (NusB protein) [Streptococcus equi subsp. zooepidemicus] Length = 150 Score = 56.2 bits (134), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 38/140 (27%), Positives = 66/140 (47%), Gaps = 6/140 (4%) Query: 11 KLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFR 70 + H R R A QAL+ +++ G +++ Y + + D + L V + Sbjct: 4 RFQHSRRDLRERAFQALFTMEMGGDF---LLASQFAYDYDKEVADDKQPSELPV---FLL 57 Query: 71 VIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEY 130 +++GVMD K +D +I L WS RL ++ ++LR G+ E+ P V ++E Sbjct: 58 NLVNGVMDHKAELDEVIKKNLKAGWSIERLTVVDKTMLRLGLFEMTLFEETPDRVALNEI 117 Query: 131 VCIAHDFFYGDEPKFINAVL 150 + IA + KFIN +L Sbjct: 118 IEIAKKYSDDTSAKFINGLL 137 >gi|28211246|ref|NP_782190.1| transcription antitermination protein NusB [Clostridium tetani E88] gi|32171611|sp|Q894G5|NUSB_CLOTE RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|28203686|gb|AAO36127.1| N utilization substance protein B [Clostridium tetani E88] Length = 153 Score = 56.2 bits (134), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 49/154 (31%), Positives = 79/154 (51%), Gaps = 15/154 (9%) Query: 15 RRGIARLAAVQALYQIDIIGCSTTEII-------SEYETYR--FCADTELDVESVYL-HV 64 +R +R +Q L+++ I + EII +E E E+D E + L V Sbjct: 2 KRKKSREMTMQLLFEMMIKKENYVEIINTLKEALTEEEDINSILGEKKEMDEERIDLDEV 61 Query: 65 DLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVE 124 DLE+ + GV + + +D I L + W+ +RL + +ILR E++ + VP Sbjct: 62 DLEYLIHTLKGVEENSKVLDEHIEKYL-KNWTLNRLAKVDLAILRLCSYEILFSNEVPDN 120 Query: 125 VIISEYVCIAHDFFYGDE--PKFINAVLDKVSRK 156 V I+E V +A YGD+ P FINAVLDK++++ Sbjct: 121 VAINEGVELAKK--YGDDKSPAFINAVLDKIAKQ 152 >gi|224373796|ref|YP_002608168.1| transcription antitermination factor NusB [Nautilia profundicola AmH] gi|223589865|gb|ACM93601.1| transcription antitermination factor NusB [Nautilia profundicola AmH] Length = 136 Score = 56.2 bits (134), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 30/91 (32%), Positives = 53/91 (58%), Gaps = 2/91 (2%) Query: 67 EWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVI 126 E+ + ++ GV + ID +I + L + W F RLD + ILR G+ E++ + P +++ Sbjct: 44 EFAKKLLKGVSEHIDKIDEIIKNHLID-WDFERLDKVDKQILRVGIYEILYTDT-PYQIV 101 Query: 127 ISEYVCIAHDFFYGDEPKFINAVLDKVSRKE 157 I E V IA +F FIN +LD+V++++ Sbjct: 102 IDEAVKIAKNFSEDKAKSFINGILDRVAKEK 132 >gi|300934532|ref|ZP_07149788.1| transcription antitermination protein NusB [Corynebacterium resistens DSM 45100] Length = 204 Score = 56.2 bits (134), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 29/89 (32%), Positives = 45/89 (50%) Query: 67 EWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVI 126 E+ I+ G ID IS L +W RL + ++LR EL+ VP +V Sbjct: 58 EYTATIVEGTATNLDAIDDAISMNLASEWRLDRLPAVDRAVLRVAAWELLFNDEVPNQVA 117 Query: 127 ISEYVCIAHDFFYGDEPKFINAVLDKVSR 155 ++E + +A + + P ++NAVLD VSR Sbjct: 118 MTEGIELAAQYSHDKAPAYVNAVLDGVSR 146 >gi|242278127|ref|YP_002990256.1| NusB antitermination factor [Desulfovibrio salexigens DSM 2638] gi|242121021|gb|ACS78717.1| NusB antitermination factor [Desulfovibrio salexigens DSM 2638] Length = 155 Score = 56.2 bits (134), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 41/152 (26%), Positives = 78/152 (51%), Gaps = 16/152 (10%) Query: 10 LKLSHRRGI---ARLAAVQALYQIDII---GCSTTEIISEYETYRFCADTELDVESVYLH 63 +++S +G+ R+ A Q LY + + G TTE I ++ +TE D+ Sbjct: 1 MQMSQTKGLRRKGRVLAFQVLYGLSFVPPHGGWTTERIYN-QSPAVIRETEEDL------ 53 Query: 64 VDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPV 123 + + R ++ G+ + ++ +D +I ++ W R+ + +ILR V EL+ +P+ Sbjct: 54 --ILFARELLIGIWNAQEELDEVIGRY-SKHWKIERIAKVELAILRLAVYELVHKPDIPL 110 Query: 124 EVIISEYVCIAHDFFYGDEPKFINAVLDKVSR 155 +V I+E + +A F G+ FIN +LD V+R Sbjct: 111 KVGINEGIELAKKFGDGNSRNFINGILDAVAR 142 >gi|154686696|ref|YP_001421857.1| transcription antitermination protein NusB [Bacillus amyloliquefaciens FZB42] gi|166215663|sp|A7Z6K0|NUSB_BACA2 RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|154352547|gb|ABS74626.1| NusB [Bacillus amyloliquefaciens FZB42] Length = 130 Score = 56.2 bits (134), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 38/139 (27%), Positives = 65/139 (46%), Gaps = 16/139 (11%) Query: 15 RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74 +R AR A+QAL+QID+ + + I LD E +F +++ Sbjct: 2 KRRTAREKALQALFQIDVSDIAPNDAIEH----------ALDGEKTDA-----FFEQLVY 46 Query: 75 GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134 GV++ + +D +IS L W R+ + +ILR V E++ +P V ++E + +A Sbjct: 47 GVIEHQVQLDEMISGHLV-NWKLDRIANVDRAILRLAVYEMVYSDDIPANVSLNEAIELA 105 Query: 135 HDFFYGDEPKFINAVLDKV 153 F KF+N VL + Sbjct: 106 KRFGDDKAAKFVNGVLSNI 124 >gi|227327507|ref|ZP_03831531.1| transcription antitermination protein NusB [Pectobacterium carotovorum subsp. carotovorum WPP14] Length = 139 Score = 56.2 bits (134), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 41/132 (31%), Positives = 69/132 (52%), Gaps = 13/132 (9%) Query: 23 AVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQH 82 AVQALY + ++ ++F +E DV+ V D+ +FR ++ GV + + Sbjct: 13 AVQALYSWQLSKNDIADV-----EHQFL--SEQDVKDV----DITYFRELLAGVATQAEK 61 Query: 83 IDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDE 142 +D L++ L+ + L + +ILR + EL + VP +V I+E + +A F D Sbjct: 62 LDQLMAPFLSRQ--IEELGQVEKAILRLAMFELSKREDVPYKVAINEAIELAKIFGAEDS 119 Query: 143 PKFINAVLDKVS 154 KF+N VLDKV+ Sbjct: 120 HKFVNGVLDKVA 131 >gi|291542871|emb|CBL15981.1| transcription antitermination factor NusB [Ruminococcus bromii L2-63] Length = 164 Score = 56.2 bits (134), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 29/89 (32%), Positives = 51/89 (57%), Gaps = 1/89 (1%) Query: 68 WFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVII 127 + + ++ G+ D+ + ID +I+S L + W+ SR+ +ILR + E+ +VP V I Sbjct: 70 YAQAVVSGIEDKHEEIDEIIASHLKKGWTLSRISKPSLAILRLAIYEMKYLDNVPQSVSI 129 Query: 128 SEYVCIAHDFFYGDEPKFINAVLDKVSRK 156 +E V +A + DE KF+N +L SR+ Sbjct: 130 NEAVELAKKYTI-DESKFVNGILGTYSRE 157 >gi|259909279|ref|YP_002649635.1| transcription antitermination protein NusB [Erwinia pyrifoliae Ep1/96] gi|292487447|ref|YP_003530319.1| transcription antitermination protein NusB [Erwinia amylovora CFBP1430] gi|292898689|ref|YP_003538058.1| N utilization substance protein B [Erwinia amylovora ATCC 49946] gi|224964901|emb|CAX56424.1| N utilization substance protein B [Erwinia pyrifoliae Ep1/96] gi|283479334|emb|CAY75250.1| transcription antitermination protein NusB [Erwinia pyrifoliae DSM 12163] gi|291198537|emb|CBJ45645.1| N utilization substance protein B [Erwinia amylovora ATCC 49946] gi|291552866|emb|CBA19911.1| transcription antitermination protein NusB [Erwinia amylovora CFBP1430] gi|310766819|gb|ADP11769.1| transcription antitermination protein NusB [Erwinia sp. Ejp617] gi|312171550|emb|CBX79808.1| transcription antitermination protein NusB [Erwinia amylovora ATCC BAA-2158] Length = 139 Score = 56.2 bits (134), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 43/132 (32%), Positives = 66/132 (50%), Gaps = 13/132 (9%) Query: 23 AVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQH 82 AVQALY I ++ Y+F A E DV+ V D+ +FR ++ GV + Sbjct: 13 AVQALYSWQISKNDIADV-----EYQFLA--EQDVKDV----DITYFRELVGGVATHSAY 61 Query: 83 IDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDE 142 +D L+ L+ + L + +ILR + EL + VP +V I+E + +A F D Sbjct: 62 LDDLMKPFLSRQ--LEELGQVEKAILRISLFELSKRSDVPYKVAINEGIELAKVFGAEDS 119 Query: 143 PKFINAVLDKVS 154 KF+N VLDK + Sbjct: 120 HKFVNGVLDKAA 131 >gi|320011921|gb|ADW06771.1| NusB antitermination factor [Streptomyces flavogriseus ATCC 33331] Length = 143 Score = 56.2 bits (134), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 41/147 (27%), Positives = 67/147 (45%), Gaps = 12/147 (8%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 R AR A Q L++ D G S +++++ D + V + ++ G Sbjct: 4 RNKARKRAFQILFEADQRGESVQTVLADWVRLSRTDDRQPPVGEFTME--------LVEG 55 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135 ID LI + + W R+ ++ SILR G EL+ S P V+I E V +A Sbjct: 56 YAQYADRIDDLIVTYAVD-WEIDRMPVVDRSILRLGAYELVWMDSTPDAVVIDEAVQLAK 114 Query: 136 DFFYGDEPKFINAVLDKVSRKEEIKRS 162 +F D P F+N +L +R +++K S Sbjct: 115 EFSTDDSPAFVNGLL---ARFKDLKPS 138 >gi|213427852|ref|ZP_03360602.1| transcription antitermination protein NusB [Salmonella enterica subsp. enterica serovar Typhi str. E02-1180] Length = 139 Score = 56.2 bits (134), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 46/145 (31%), Positives = 72/145 (49%), Gaps = 14/145 (9%) Query: 10 LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF 69 +KL+ R AR AVQALY + ++ Y+F A E DV+ V D+ +F Sbjct: 1 MKLAARHR-ARECAVQALYSWQLSQNDIADV-----EYQFLA--EQDVKDV----DVLYF 48 Query: 70 RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISE 129 R ++ GV ++D L+ L+ L + ++LR + EL + VP +V I+E Sbjct: 49 RELLSGVATNSAYLDGLMKPYLSR--LLEELGQVEKAVLRIALFELSKRSDVPYKVAINE 106 Query: 130 YVCIAHDFFYGDEPKFINAVLDKVS 154 + +A F D KF+N VLDK + Sbjct: 107 AIELAKTFGAEDSHKFVNGVLDKAA 131 >gi|209517108|ref|ZP_03265955.1| NusB antitermination factor [Burkholderia sp. H160] gi|209502501|gb|EEA02510.1| NusB antitermination factor [Burkholderia sp. H160] Length = 144 Score = 56.2 bits (134), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 43/145 (29%), Positives = 63/145 (43%), Gaps = 15/145 (10%) Query: 10 LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF 69 +K + RR +R A Q LYQ + G EI D +L Y D E Sbjct: 1 MKSARRR--SRELATQGLYQWLLSGSPGGEI-----------DAQLRGAQGYDKADHEHL 47 Query: 70 RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISE 129 I+HGVM + + I+ CL +L + ++L EL +P V+I+E Sbjct: 48 DAILHGVMRDSEALSAAIAPCLDR--PIDQLSPVERAVLLVAAFELKNHLDIPYRVVINE 105 Query: 130 YVCIAHDFFYGDEPKFINAVLDKVS 154 V + F D K++N VLDK+S Sbjct: 106 AVELTKTFGGSDGYKYVNGVLDKLS 130 >gi|88811151|ref|ZP_01126407.1| transcription antitermination protein NusB [Nitrococcus mobilis Nb-231] gi|88791690|gb|EAR22801.1| transcription antitermination protein NusB [Nitrococcus mobilis Nb-231] Length = 157 Score = 56.2 bits (134), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 42/144 (29%), Positives = 67/144 (46%), Gaps = 20/144 (13%) Query: 24 VQALYQIDIIGCSTTEIISEY-ETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQH 82 +QALYQ + + EI ++ E + HVDLE+F +++ + R Sbjct: 22 LQALYQWQLTAQDSAEIERQFLEEHNMA------------HVDLEYFAELLYEIPARLAS 69 Query: 83 IDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDE 142 +D LI L + +D + +ILR G EL + +P V+++E V +A F Sbjct: 70 LDALIEPALDRPLAV--IDPVEKAILRMGTYELTQRLDIPYRVVVNEAVDLARLFGAEQS 127 Query: 143 PKFINAVLDKVS-----RKEEIKR 161 ++IN VLD+V R EI R Sbjct: 128 HRYINGVLDRVGHHTPLRAAEIGR 151 >gi|322420503|ref|YP_004199726.1| NusB antitermination factor [Geobacter sp. M18] gi|320126890|gb|ADW14450.1| NusB antitermination factor [Geobacter sp. M18] Length = 145 Score = 56.2 bits (134), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 40/143 (27%), Positives = 71/143 (49%), Gaps = 8/143 (5%) Query: 13 SHRRGIARLAAVQALYQIDII-GCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71 + R G R A+QALY D++ + T + +E++ D L S E Sbjct: 3 TRREG--RELALQALYSKDLVLQDANTTLKRIFESFGEGEDPTLSANSKAYAFASE---- 56 Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131 +++GV+ Q ID I+ ++ WS +R+ + +ILR V EL+ +P V ++E + Sbjct: 57 LVNGVVTHLQEIDGRIAEK-SKHWSMARMARVDLNILRLAVFELLYRPDIPKNVTMNEAI 115 Query: 132 CIAHDFFYGDEPKFINAVLDKVS 154 +A F D F+N +LD+++ Sbjct: 116 EVAKKFGADDSASFVNGILDEIA 138 >gi|330824837|ref|YP_004388140.1| NusB antitermination factor [Alicycliphilus denitrificans K601] gi|329310209|gb|AEB84624.1| NusB antitermination factor [Alicycliphilus denitrificans K601] Length = 181 Score = 56.2 bits (134), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 41/141 (29%), Positives = 68/141 (48%), Gaps = 13/141 (9%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 R AR A+QALYQ + G T I F D S + D + ++HG Sbjct: 38 RSRAREFALQALYQHLVGGNDATAID------LFTRDL-----SGFHKADAAHYDALLHG 86 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135 ++ QH+D LI+ L K + + I +++ GV E C VP V+I+E + +A Sbjct: 87 CIETAQHMDALIAPLLDRK--MAEISPIEHAVMWIGVYEFQHCPDVPWRVVINECIELAK 144 Query: 136 DFFYGDEPKFINAVLDKVSRK 156 +F D K++N +L+ ++ + Sbjct: 145 EFGGTDGHKYVNGILNGLAPQ 165 >gi|30250477|ref|NP_842547.1| antitermination protein NusB [Nitrosomonas europaea ATCC 19718] gi|39931886|sp|Q82S07|NUSB_NITEU RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|30139318|emb|CAD86470.1| Antitermination protein NusB [Nitrosomonas europaea ATCC 19718] Length = 167 Score = 56.2 bits (134), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 36/143 (25%), Positives = 67/143 (46%), Gaps = 13/143 (9%) Query: 14 HRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVII 73 +RR ++R A+Q +YQ + G + +I +L S + D +F ++ Sbjct: 21 NRRRLSRELALQGIYQWQVTGGNARDI-----------GMQLQQVSFFSKADGPYFSDLL 69 Query: 74 HGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCI 133 GV++ + I L + + L + CSIL G E++ +P II+E + + Sbjct: 70 QGVLEHAADLQTQIQPHLDRQ--IAELSPVECSILLIGTYEMVYRPEIPCRAIINEAIEL 127 Query: 134 AHDFFYGDEPKFINAVLDKVSRK 156 A + D K++N VLDK++ + Sbjct: 128 AKSYGGTDGHKYVNGVLDKLATR 150 >gi|125624663|ref|YP_001033146.1| transcription termination protein nusB [Lactococcus lactis subsp. cremoris MG1363] gi|124493471|emb|CAL98448.1| transcription termination protein nusB [Lactococcus lactis subsp. cremoris MG1363] gi|300071455|gb|ADJ60855.1| transcription termination protein nusB [Lactococcus lactis subsp. cremoris NZ9000] Length = 325 Score = 56.2 bits (134), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 27/84 (32%), Positives = 50/84 (59%), Gaps = 1/84 (1%) Query: 67 EWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVI 126 E+F ++ GV+++K+ +++ IS L + WSFSRL ++ +IL+ E++ P V Sbjct: 236 EYFTQLVDGVLEKKEDLEINISKYLAKNWSFSRLTLVEQAILQVSTYEIL-FTDTPNVVA 294 Query: 127 ISEYVCIAHDFFYGDEPKFINAVL 150 ++E + ++ DF +FIN VL Sbjct: 295 VNEAIELSKDFSDEKSSRFINGVL 318 >gi|219847234|ref|YP_002461667.1| NusB antitermination factor [Chloroflexus aggregans DSM 9485] gi|254772623|sp|B8G2S7|NUSB_CHLAD RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|219541493|gb|ACL23231.1| NusB antitermination factor [Chloroflexus aggregans DSM 9485] Length = 150 Score = 56.2 bits (134), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 34/146 (23%), Positives = 73/146 (50%), Gaps = 14/146 (9%) Query: 10 LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF 69 ++L+ +R R+AA+Q L+++D + +++ R D + ES E+ Sbjct: 4 VRLASQRHRVRIAALQILFEVDETDHAIDQVLE-----RRLTDEPMSAESA------EFL 52 Query: 70 RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELI--ECHSVPVEVII 127 R ++ G + + ++D +I W +++ + ++LR + EL+ E P++ +I Sbjct: 53 RRLVFGTWEHRSYLDRIIEEA-APNWPVNQMPGVDKAVLRIALFELLIDEVEKTPIKAVI 111 Query: 128 SEYVCIAHDFFYGDEPKFINAVLDKV 153 +E V +A +F + +F+N VL V Sbjct: 112 NEAVELAKEFGSDNSSRFVNGVLGTV 137 >gi|271964358|ref|YP_003338554.1| transcription antitermination factor NusB [Streptosporangium roseum DSM 43021] gi|270507533|gb|ACZ85811.1| transcription antitermination factor NusB [Streptosporangium roseum DSM 43021] Length = 136 Score = 56.2 bits (134), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 27/86 (31%), Positives = 48/86 (55%), Gaps = 1/86 (1%) Query: 67 EWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVI 126 E+ I+ GV + ID LI++ E W+ R+ + ++LR G EL+ VP V+ Sbjct: 42 EYTATIVEGVCRHRARIDELITT-YAEGWTLDRMPAVDRNLLRGGTYELLWMPDVPEGVV 100 Query: 127 ISEYVCIAHDFFYGDEPKFINAVLDK 152 ISE+V +A + + P+F+N ++ + Sbjct: 101 ISEWVSLASELSTDESPQFVNGLMAR 126 >gi|73666920|ref|YP_302936.1| hypothetical protein Ecaj_0291 [Ehrlichia canis str. Jake] gi|72394061|gb|AAZ68338.1| hypothetical protein Ecaj_0291 [Ehrlichia canis str. Jake] Length = 148 Score = 56.2 bits (134), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 32/92 (34%), Positives = 53/92 (57%), Gaps = 1/92 (1%) Query: 62 LHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSV 121 + +D + I++ ++ I+ I++ L EKWS R+++I SI++ V ELI C + Sbjct: 28 IQIDNQLLIKIMNTMLLTFNTINSTIATFLNEKWSIDRINLISLSIIKTAVCELI-CSNT 86 Query: 122 PVEVIISEYVCIAHDFFYGDEPKFINAVLDKV 153 +II+EYV IA E FINA+L++V Sbjct: 87 DAVIIINEYVNIASHILEKTEVNFINAILNQV 118 >gi|116511490|ref|YP_808706.1| transcription termination factor [Lactococcus lactis subsp. cremoris SK11] gi|116107144|gb|ABJ72284.1| Transcription termination factor [Lactococcus lactis subsp. cremoris SK11] Length = 325 Score = 56.2 bits (134), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 27/84 (32%), Positives = 50/84 (59%), Gaps = 1/84 (1%) Query: 67 EWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVI 126 E+F ++ GV+++K+ +++ IS L + WSFSRL ++ +IL+ E++ P V Sbjct: 236 EYFTQLVDGVLEKKEDLEINISKYLAKNWSFSRLTLVEQAILQVSTYEIL-FTDTPNVVA 294 Query: 127 ISEYVCIAHDFFYGDEPKFINAVL 150 ++E + ++ DF +FIN VL Sbjct: 295 VNEAIELSKDFSDEKSSRFINGVL 318 >gi|332686256|ref|YP_004456030.1| transcription termination protein NusB [Melissococcus plutonius ATCC 35311] gi|332370265|dbj|BAK21221.1| transcription termination protein NusB [Melissococcus plutonius ATCC 35311] Length = 158 Score = 56.2 bits (134), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 40/143 (27%), Positives = 66/143 (46%), Gaps = 12/143 (8%) Query: 15 RRGIARLAAVQALYQIDIIGCSTTEIISEY----ETYRFCADTELDVESVYLHVDLEWFR 70 RR I R A+QAL+ +D T + +Y + Y ++ + ++ YL Sbjct: 8 RREI-REKALQALFPLDFNTELTKQDAIDYALMLDNYEVISEDQENLIPTYLDF------ 60 Query: 71 VIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEY 130 ++ GV K +D +I L + W+F RL I ILR V E++ VP V ++E Sbjct: 61 -LVDGVCSHKNELDQVIKRLLGKNWTFERLSKIDTVILRMAVFEMMYSSDVPAPVALNEA 119 Query: 131 VCIAHDFFYGDEPKFINAVLDKV 153 + +A + + KF N +L V Sbjct: 120 LELAKKYSDDNARKFTNGILANV 142 >gi|327392955|dbj|BAK10377.1| N utilization substance protein B NusB [Pantoea ananatis AJ13355] Length = 139 Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 43/139 (30%), Positives = 68/139 (48%), Gaps = 13/139 (9%) Query: 23 AVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQH 82 AVQALY + ++ Y+F A E DV+ V D+ +FR ++ GV + Sbjct: 13 AVQALYSWQLSNNDIADV-----EYQFLA--EQDVKDV----DITYFRELLSGVATNSAY 61 Query: 83 IDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDE 142 +D L+ L+ + L + +ILR + EL + VP +V I+E + +A F D Sbjct: 62 LDGLMKPYLSRQ--LEELGQVEKAILRISLYELSKRSDVPYKVAINEGIELAKVFGAEDS 119 Query: 143 PKFINAVLDKVSRKEEIKR 161 KF+N VLDK + +R Sbjct: 120 HKFVNGVLDKAGPQIRPQR 138 >gi|16759395|ref|NP_455012.1| transcription antitermination protein NusB [Salmonella enterica subsp. enterica serovar Typhi str. CT18] gi|29142833|ref|NP_806175.1| transcription antitermination protein NusB [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|213027238|ref|ZP_03341685.1| transcription antitermination protein NusB [Salmonella enterica subsp. enterica serovar Typhi str. 404ty] gi|213163226|ref|ZP_03348936.1| transcription antitermination protein NusB [Salmonella enterica subsp. enterica serovar Typhi str. E00-7866] gi|213418053|ref|ZP_03351130.1| transcription antitermination protein NusB [Salmonella enterica subsp. enterica serovar Typhi str. E01-6750] gi|213579887|ref|ZP_03361713.1| transcription antitermination protein NusB [Salmonella enterica subsp. enterica serovar Typhi str. E98-0664] gi|213615893|ref|ZP_03371719.1| transcription antitermination protein NusB [Salmonella enterica subsp. enterica serovar Typhi str. E98-2068] gi|213650170|ref|ZP_03380223.1| transcription antitermination protein NusB [Salmonella enterica subsp. enterica serovar Typhi str. J185] gi|213855378|ref|ZP_03383618.1| transcription antitermination protein NusB [Salmonella enterica subsp. enterica serovar Typhi str. M223] gi|289804986|ref|ZP_06535615.1| transcription antitermination protein NusB [Salmonella enterica subsp. enterica serovar Typhi str. AG3] gi|289825061|ref|ZP_06544413.1| transcription antitermination protein NusB [Salmonella enterica subsp. enterica serovar Typhi str. E98-3139] gi|22095954|sp|Q8Z8X6|NUSB_SALTI RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|25299803|pir||AB0554 N utilization substance protein B [imported] - Salmonella enterica subsp. enterica serovar Typhi (strain CT18) gi|16501686|emb|CAD08874.1| N utilization substance protein B [Salmonella enterica subsp. enterica serovar Typhi] gi|29138465|gb|AAO70035.1| N utilization substance protein B [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] Length = 139 Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 44/139 (31%), Positives = 68/139 (48%), Gaps = 13/139 (9%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 R AR AVQALY + ++ Y+F A E DV+ V D+ +FR ++ G Sbjct: 6 RHRARECAVQALYSWQLSQNDIADV-----EYQFLA--EQDVKDV----DVLYFRELLSG 54 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135 V ++D L+ L+ L + ++LR + EL + VP +V I+E + +A Sbjct: 55 VATNSAYLDGLMKPYLSR--LLEELGQVEKAVLRIALFELSKRSDVPYKVAINEAIELAK 112 Query: 136 DFFYGDEPKFINAVLDKVS 154 F D KF+N VLDK + Sbjct: 113 TFGAEDSHKFVNGVLDKAA 131 >gi|224532931|ref|ZP_03673541.1| transcription antitermination factor NusB [Borrelia burgdorferi WI91-23] gi|224512130|gb|EEF82521.1| transcription antitermination factor NusB [Borrelia burgdorferi WI91-23] Length = 145 Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 40/140 (28%), Positives = 67/140 (47%), Gaps = 9/140 (6%) Query: 20 RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79 R+ A Q +Y IDI + +I + D +LD+E+ + ++ ++ G + Sbjct: 8 RVLAFQKIYSIDINQSAMDDIFDIFN----IEDKDLDIENESIK---SFYSSLVIGTFNN 60 Query: 80 KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLEL-IECHSVPVEVIISEYVCIAHDFF 138 +HID LI ++ WS R+D + +ILR GV L + II E + IA + Sbjct: 61 LEHIDSLIRD-ISLNWSLERMDKVDLAILRMGVYSLKFQNFENSKRAIIDEAILIAKKYG 119 Query: 139 YGDEPKFINAVLDKVSRKEE 158 + KFIN +LD + + E Sbjct: 120 SKNSYKFINGILDALLKNME 139 >gi|169824540|ref|YP_001692151.1| transcription terminator [Finegoldia magna ATCC 29328] gi|297588522|ref|ZP_06947165.1| transcription antitermination factor NusB [Finegoldia magna ATCC 53516] gi|303233660|ref|ZP_07320314.1| transcription antitermination factor NusB [Finegoldia magna BVS033A4] gi|238687751|sp|B0S1M1|NUSB_FINM2 RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|167831345|dbj|BAG08261.1| transcription terminator [Finegoldia magna ATCC 29328] gi|297573895|gb|EFH92616.1| transcription antitermination factor NusB [Finegoldia magna ATCC 53516] gi|302495094|gb|EFL54846.1| transcription antitermination factor NusB [Finegoldia magna BVS033A4] Length = 137 Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 39/145 (26%), Positives = 76/145 (52%), Gaps = 16/145 (11%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 R +R +A+Q +Y++++ G + I E FC ++ D+E+F+ I+ Sbjct: 3 RRQSRKSAMQLIYEMNMNGDYDKQRIEE-----FCKYQNIN------KNDIEFFKEIVLN 51 Query: 76 VMDRKQHIDLLIS--SCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCI 133 + +HID +++ T++W+ R++ + SIL+ GV E++ S P V I+E V + Sbjct: 52 FI---EHIDDIVNIIENNTKQWNLDRINKLDLSILQVGVCEILYVESTPDSVAINEAVEL 108 Query: 134 AHDFFYGDEPKFINAVLDKVSRKEE 158 A ++ FIN +L V +++E Sbjct: 109 AKEYSTEKSYSFINGILGSVLKRKE 133 >gi|308185886|ref|YP_003930017.1| N utilization substance protein B [Pantoea vagans C9-1] gi|308056396|gb|ADO08568.1| N utilization substance protein B [Pantoea vagans C9-1] Length = 139 Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 42/132 (31%), Positives = 65/132 (49%), Gaps = 13/132 (9%) Query: 23 AVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQH 82 AVQALY + ++ Y+F A E DV+ V D+ +FR ++ GV + Sbjct: 13 AVQALYSWQLSNNDIADV-----EYQFLA--EQDVKDV----DITYFRELLSGVATNSAY 61 Query: 83 IDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDE 142 +D L+ L+ + L + +ILR + EL + VP +V I+E + +A F D Sbjct: 62 LDGLMKPYLSRQ--LEELGQVEKAILRISLYELSKRDDVPYKVAINEGIELAKVFGAEDS 119 Query: 143 PKFINAVLDKVS 154 KF+N VLDK Sbjct: 120 HKFVNGVLDKAG 131 >gi|262042439|ref|ZP_06015599.1| transcription termination/antitermination factor NusB [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|259040214|gb|EEW41325.1| transcription termination/antitermination factor NusB [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] Length = 139 Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 41/132 (31%), Positives = 67/132 (50%), Gaps = 13/132 (9%) Query: 23 AVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQH 82 AVQALY + ++ Y+F A E DV+ +VD+ +FR ++ GV + Sbjct: 13 AVQALYSWQLSHNDIADV-----EYQFLA--EQDVK----YVDVLYFRELLSGVATNSAY 61 Query: 83 IDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDE 142 +D L+ L+ + L + ++LR + EL + VP +V I+E + +A F D Sbjct: 62 LDGLMKPYLSRQ--LEELGQVEKAVLRIALFELSKRDDVPYKVAINEAIELAKTFGAEDS 119 Query: 143 PKFINAVLDKVS 154 KF+N VLDK + Sbjct: 120 HKFVNGVLDKAA 131 >gi|312149672|gb|ADQ29743.1| transcription antitermination factor NusB [Borrelia burgdorferi N40] Length = 142 Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 40/140 (28%), Positives = 67/140 (47%), Gaps = 9/140 (6%) Query: 20 RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79 R+ A Q +Y IDI + +I + D +LD+E+ + ++ ++ G + Sbjct: 5 RVLAFQKIYSIDINQSAMDDIFDIFN----IEDKDLDIENESIK---SFYSSLVIGTFNN 57 Query: 80 KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLEL-IECHSVPVEVIISEYVCIAHDFF 138 +HID LI ++ WS R+D + +ILR GV L + II E + IA + Sbjct: 58 LEHIDSLIRD-ISLNWSLERMDKVDLAILRMGVYSLKFQNFENSKRAIIDEAILIAKKYG 116 Query: 139 YGDEPKFINAVLDKVSRKEE 158 + KFIN +LD + + E Sbjct: 117 SKNSYKFINGILDALLKNME 136 >gi|254383581|ref|ZP_04998931.1| transcription antitermination protein NusB [Streptomyces sp. Mg1] gi|194342476|gb|EDX23442.1| transcription antitermination protein NusB [Streptomyces sp. Mg1] Length = 144 Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 38/148 (25%), Positives = 68/148 (45%), Gaps = 10/148 (6%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 R AR A Q L++ D G ++++++ + D + V + + ++ G Sbjct: 4 RSNARKRAFQILFEADQRGVPVRDVLADWIRHARSDDRQPPVSAFTMD--------LVEG 55 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135 D+ ID LI + + W R+ ++ +I+R G ELI P V I E V +A Sbjct: 56 YADKVNRIDDLIITYAVD-WDLDRMPVVDRNIVRLGAYELIWVDDTPDAVAIDEAVQLAK 114 Query: 136 DFFYGDEPKFINAVLDKVSR-KEEIKRS 162 +F + P F+N +L + K ++RS Sbjct: 115 EFSTDESPSFVNGLLARFKDLKPSLRRS 142 >gi|319442128|ref|ZP_07991284.1| transcription antitermination protein NusB [Corynebacterium variabile DSM 44702] Length = 190 Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 27/89 (30%), Positives = 49/89 (55%), Gaps = 1/89 (1%) Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHS-VPVEVIISEY 130 I+ GV + ID I+ L+ +W+ RL + ++LR EL+ H +P +V + E Sbjct: 62 IVGGVAENLDGIDGAIAGHLSSEWTLDRLPAVDRAVLRVSAWELLHNHDEIPEKVAVDEG 121 Query: 131 VCIAHDFFYGDEPKFINAVLDKVSRKEEI 159 + +A ++ + P +++AVLD +SR I Sbjct: 122 IGLAKEYGHDKAPGYVHAVLDGISRSRRI 150 >gi|311280694|ref|YP_003942925.1| NusB antitermination factor [Enterobacter cloacae SCF1] gi|308749889|gb|ADO49641.1| NusB antitermination factor [Enterobacter cloacae SCF1] Length = 139 Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 41/132 (31%), Positives = 66/132 (50%), Gaps = 13/132 (9%) Query: 23 AVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQH 82 AVQALY + ++ Y+F A E DV+ V D+ +FR ++ GV + Sbjct: 13 AVQALYSWQLSKNDIADV-----EYQFLA--EQDVKDV----DVLYFRELLSGVATNSAY 61 Query: 83 IDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDE 142 +D L+ L+ + L + ++LR + EL + VP +V I+E + +A F D Sbjct: 62 LDGLMKPYLSRQ--LEELGQVEKAVLRIALFELSKRDDVPYKVAINEAIELAKTFGAEDS 119 Query: 143 PKFINAVLDKVS 154 KF+N VLDK + Sbjct: 120 HKFVNGVLDKAA 131 >gi|21219991|ref|NP_625770.1| transcription antitermination protein NusB [Streptomyces coelicolor A3(2)] gi|256788910|ref|ZP_05527341.1| transcription antitermination protein NusB [Streptomyces lividans TK24] gi|289772797|ref|ZP_06532175.1| transcription antitermination factor NusB [Streptomyces lividans TK24] gi|22095971|sp|Q9KXR0|NUSB_STRCO RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|8249949|emb|CAB93370.1| putative NusB-family protein [Streptomyces coelicolor A3(2)] gi|289702996|gb|EFD70425.1| transcription antitermination factor NusB [Streptomyces lividans TK24] Length = 142 Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 38/147 (25%), Positives = 68/147 (46%), Gaps = 12/147 (8%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 R AR A Q L++ D G +++++ + + V + ++ G Sbjct: 4 RNTARKRAFQILFEGDQRGADVLTVLADWVRHSRSDTRQPPVSEYTME--------LVEG 55 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135 R + ID LI+ + W+ R+ ++ +ILR G EL+ + P V++ E V +A Sbjct: 56 YAGRAERIDELIAQYSVD-WTLDRMPVVDRNILRLGAYELLWVDATPDAVVLDEMVQLAK 114 Query: 136 DFFYGDEPKFINAVLDKVSRKEEIKRS 162 +F + P FIN +L R +E+K S Sbjct: 115 EFSTDESPAFINGLL---GRLKELKPS 138 >gi|262274775|ref|ZP_06052586.1| transcription termination protein NusB [Grimontia hollisae CIP 101886] gi|262221338|gb|EEY72652.1| transcription termination protein NusB [Grimontia hollisae CIP 101886] Length = 151 Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 42/147 (28%), Positives = 72/147 (48%), Gaps = 6/147 (4%) Query: 10 LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEY---ETYRFCADTELDVESVYLHVDL 66 +K + RR AR A+QA+Y + + +I +++ + Y + D+ Sbjct: 1 MKPAARRN-ARHFALQAIYSWQLTKDNVADIEAQFLAADNYEEEEHQAEEPRLRQPETDV 59 Query: 67 EWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVI 126 E+FR ++ GV+ Q +D + L+ LD + +ILR + EL + VP +V+ Sbjct: 60 EYFRDLLSGVVLNYQELDSKMRPYLSR--PLQDLDEMEHAILRLSMYELCKREDVPYKVV 117 Query: 127 ISEYVCIAHDFFYGDEPKFINAVLDKV 153 I+E + +A F D KF+N VLDK Sbjct: 118 INEAIELAKRFGAEDSHKFVNGVLDKA 144 >gi|269127152|ref|YP_003300522.1| NusB antitermination factor [Thermomonospora curvata DSM 43183] gi|268312110|gb|ACY98484.1| NusB antitermination factor [Thermomonospora curvata DSM 43183] Length = 138 Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 26/84 (30%), Positives = 48/84 (57%), Gaps = 1/84 (1%) Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131 +I GV + ++ ID L+++ T W+ R+ + ++LR G EL+ VP V I+E V Sbjct: 49 LIEGVQEHRERIDELLATYAT-GWTLDRMPAVDRNLLRLGAYELLWVDDVPDGVAIAEAV 107 Query: 132 CIAHDFFYGDEPKFINAVLDKVSR 155 +A + + P+F+N +L ++ R Sbjct: 108 ALATELSTDESPRFVNGLLSRLQR 131 >gi|239932425|ref|ZP_04689378.1| transcription antitermination protein NusB [Streptomyces ghanaensis ATCC 14672] gi|291440791|ref|ZP_06580181.1| transcription antitermination protein NusB [Streptomyces ghanaensis ATCC 14672] gi|291343686|gb|EFE70642.1| transcription antitermination protein NusB [Streptomyces ghanaensis ATCC 14672] Length = 144 Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 39/147 (26%), Positives = 67/147 (45%), Gaps = 12/147 (8%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 R AR A Q L++ D G +++++ + + V + ++ G Sbjct: 4 RNTARKRAFQILFEGDQRGADVLTVLADWIRHSRTDTRQPPVSEYTMQ--------LVEG 55 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135 + Q ID LI+ + W+ R+ ++ SILR G EL+ P V++ E V +A Sbjct: 56 YAEHAQRIDGLIAQY-SVGWTLDRMPVVDRSILRLGAYELLWVDETPDAVVLDEMVQLAK 114 Query: 136 DFFYGDEPKFINAVLDKVSRKEEIKRS 162 +F + P FIN +L R +E+K S Sbjct: 115 EFSTDESPSFINGLL---GRLKELKPS 138 >gi|182439837|ref|YP_001827556.1| transcription antitermination protein NusB [Streptomyces griseus subsp. griseus NBRC 13350] gi|326780501|ref|ZP_08239766.1| NusB antitermination factor [Streptomyces cf. griseus XylebKG-1] gi|238689031|sp|B1W456|NUSB_STRGG RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|178468353|dbj|BAG22873.1| putative NusB-family protein [Streptomyces griseus subsp. griseus NBRC 13350] gi|326660834|gb|EGE45680.1| NusB antitermination factor [Streptomyces cf. griseus XylebKG-1] Length = 143 Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 38/135 (28%), Positives = 59/135 (43%), Gaps = 9/135 (6%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 R AR A Q L++ D G S +++++ D + V + ++ G Sbjct: 4 RNKARKRAFQILFEADQRGESVQSVLADWVRLSRTDDRQPPVGEFTME--------LVEG 55 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135 ID LI + + W R+ ++ SILR G ELI P V+I E V +A Sbjct: 56 YAQYADRIDDLIVTYAVD-WEIDRMPVVDRSILRLGAYELIWMDGTPDAVVIDEAVQLAK 114 Query: 136 DFFYGDEPKFINAVL 150 +F D P F+N +L Sbjct: 115 EFSTDDSPSFVNGLL 129 >gi|262277174|ref|ZP_06054967.1| N utilization substance protein B [alpha proteobacterium HIMB114] gi|262224277|gb|EEY74736.1| N utilization substance protein B [alpha proteobacterium HIMB114] Length = 127 Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 22/86 (25%), Positives = 50/86 (58%) Query: 70 RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISE 129 + + G ++++ ++ ++S L+ + LD +L IL+ + EL C +P +V+I++ Sbjct: 36 KKVFKGYFEQEEQLNEILSRSLSAEIKQKNLDSLLNIILKTSIYELKFCEKIPFKVVINQ 95 Query: 130 YVCIAHDFFYGDEPKFINAVLDKVSR 155 Y+ + F+ D+ + +N VLD V++ Sbjct: 96 YLDVTAQFYGNDQKRLVNGVLDNVAK 121 >gi|195941845|ref|ZP_03087227.1| transcription antitermination protein NusB [Borrelia burgdorferi 80a] gi|225549246|ref|ZP_03770219.1| transcription antitermination factor NusB [Borrelia burgdorferi 94a] gi|225370104|gb|EEG99544.1| transcription antitermination factor NusB [Borrelia burgdorferi 94a] Length = 142 Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 40/140 (28%), Positives = 67/140 (47%), Gaps = 9/140 (6%) Query: 20 RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79 R+ A Q +Y IDI + +I + D +LD+E+ + ++ ++ G + Sbjct: 5 RVLAFQKIYSIDINQSAMDDIFDIFN----IEDKDLDIENESIK---SFYSSLVIGTFNN 57 Query: 80 KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLEL-IECHSVPVEVIISEYVCIAHDFF 138 +HID LI ++ WS R+D + +ILR GV L + II E + IA + Sbjct: 58 LEHIDSLIRD-ISLNWSLERMDKVDLAILRMGVYSLKFQNFENSKRAIIDEAILIAKKYG 116 Query: 139 YGDEPKFINAVLDKVSRKEE 158 + KFIN +LD + + E Sbjct: 117 SKNSYKFINGILDALLKNME 136 >gi|16800464|ref|NP_470732.1| transcription antitermination protein NusB [Listeria innocua Clip11262] gi|22095959|sp|Q92BZ5|NUSB_LISIN RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|16413869|emb|CAC96627.1| lin1396 [Listeria innocua Clip11262] gi|313619077|gb|EFR90883.1| transcription antitermination factor NusB [Listeria innocua FSL S4-378] gi|313623883|gb|EFR93998.1| transcription antitermination factor NusB [Listeria innocua FSL J1-023] Length = 128 Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 44/142 (30%), Positives = 67/142 (47%), Gaps = 21/142 (14%) Query: 15 RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74 +R AR A+QAL+QI++ S + I + + E D ++ ++ Sbjct: 2 KRREAREKALQALFQIELNEMSLDQAI------KNIMEDEQD----------DYMEQLVE 45 Query: 75 GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134 GVM K ID +I L + W RL+ + S+LR V E+ VP V ++E + IA Sbjct: 46 GVMANKAEIDAIIEPNL-DNWRIDRLNKVDLSLLRLSVYEIKYLDDVPNRVSLNESIEIA 104 Query: 135 HDFFYGDEP--KFINAVLDKVS 154 Y DE KFIN VL ++ Sbjct: 105 K--IYSDEKSSKFINGVLANIA 124 >gi|302525862|ref|ZP_07278204.1| transcription antitermination factor NusB [Streptomyces sp. AA4] gi|302434757|gb|EFL06573.1| transcription antitermination factor NusB [Streptomyces sp. AA4] Length = 152 Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 25/83 (30%), Positives = 46/83 (55%), Gaps = 1/83 (1%) Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131 ++ GV ++ ID L++ ++ W+ R+ + ++LR GV E++ VP V I E V Sbjct: 61 VVEGVTAHRERIDELLAEH-SQGWTLERMPPVDLAVLRVGVYEMLWSADVPDAVAIDEAV 119 Query: 132 CIAHDFFYGDEPKFINAVLDKVS 154 +A + D P+F+N VL ++ Sbjct: 120 GLAKELSTDDSPRFVNGVLGRIG 142 >gi|167627528|ref|YP_001678028.1| transcription termination factor [Francisella philomiragia subsp. philomiragia ATCC 25017] gi|241668097|ref|ZP_04755675.1| transcription termination factor [Francisella philomiragia subsp. philomiragia ATCC 25015] gi|254876632|ref|ZP_05249342.1| transcription termination factor [Francisella philomiragia subsp. philomiragia ATCC 25015] gi|167597529|gb|ABZ87527.1| transcription termination factor [Francisella philomiragia subsp. philomiragia ATCC 25017] gi|254842653|gb|EET21067.1| transcription termination factor [Francisella philomiragia subsp. philomiragia ATCC 25015] Length = 141 Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 44/147 (29%), Positives = 73/147 (49%), Gaps = 13/147 (8%) Query: 10 LKLSHR-RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEW 68 +K + R R ARL VQALYQ + + +E+ ++Y AD + E Y DL Sbjct: 1 MKTTARARNNARLYTVQALYQKKVADHTFSELKTQY-----YAD---NAERHYTDWDL-- 50 Query: 69 FRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIIS 128 F ++ V + + I+ I K ++ + ++L+ + ELIEC P ++II Sbjct: 51 FYRLMDAVRENQDTINNYIQD--NSKNGIESINYVDYAVLQVAIAELIECLENPYQIIIK 108 Query: 129 EYVCIAHDFFYGDEPKFINAVLDKVSR 155 EYV I + + KF+NAVL +++ Sbjct: 109 EYVEICYSMGTEEGYKFVNAVLQNLAK 135 >gi|113969444|ref|YP_733237.1| transcription antitermination protein NusB [Shewanella sp. MR-4] gi|114046672|ref|YP_737222.1| transcription antitermination protein NusB [Shewanella sp. MR-7] gi|117919549|ref|YP_868741.1| transcription antitermination protein NusB [Shewanella sp. ANA-3] gi|119390820|sp|Q0HL87|NUSB_SHESM RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|119390821|sp|Q0HXJ0|NUSB_SHESR RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|166215719|sp|A0KU66|NUSB_SHESA RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|113884128|gb|ABI38180.1| NusB antitermination factor [Shewanella sp. MR-4] gi|113888114|gb|ABI42165.1| NusB antitermination factor [Shewanella sp. MR-7] gi|117611881|gb|ABK47335.1| NusB antitermination factor [Shewanella sp. ANA-3] Length = 134 Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 47/148 (31%), Positives = 72/148 (48%), Gaps = 15/148 (10%) Query: 10 LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF 69 +K S RR RLA VQA+Y + G + ++ E+E F + LD VD+ +F Sbjct: 1 MKPSERRKARRLA-VQAIYSWQLSGNNIADV--EHE---FLTEQSLD------GVDVAYF 48 Query: 70 RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISE 129 R + GV +K +D L L + + +I+R EL VP +V I+E Sbjct: 49 RELFAGVATKKTQLDELFIPHLDR--PIDEVSPVEKAIVRLAAYELTFRKDVPFKVAINE 106 Query: 130 YVCIAHDFFYGDEPKFINAVLDK-VSRK 156 + +A F + KF+N +LDK V+RK Sbjct: 107 AIELAKAFGADESHKFVNGLLDKLVARK 134 >gi|216264330|ref|ZP_03436322.1| transcription antitermination factor NusB [Borrelia burgdorferi 156a] gi|221217510|ref|ZP_03588981.1| transcription antitermination factor NusB [Borrelia burgdorferi 72a] gi|223889204|ref|ZP_03623793.1| transcription antitermination factor NusB [Borrelia burgdorferi 64b] gi|225549846|ref|ZP_03770808.1| transcription antitermination factor NusB [Borrelia burgdorferi 118a] gi|215980803|gb|EEC21610.1| transcription antitermination factor NusB [Borrelia burgdorferi 156a] gi|221192788|gb|EEE19004.1| transcription antitermination factor NusB [Borrelia burgdorferi 72a] gi|223885453|gb|EEF56554.1| transcription antitermination factor NusB [Borrelia burgdorferi 64b] gi|225369537|gb|EEG98988.1| transcription antitermination factor NusB [Borrelia burgdorferi 118a] Length = 145 Score = 55.5 bits (132), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 40/140 (28%), Positives = 67/140 (47%), Gaps = 9/140 (6%) Query: 20 RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79 R+ A Q +Y IDI + +I + D +LD+E+ + ++ ++ G + Sbjct: 8 RVLAFQKIYSIDINQSAMDDIFDIFN----IEDKDLDIENESIK---SFYSSLVIGTFNN 60 Query: 80 KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLEL-IECHSVPVEVIISEYVCIAHDFF 138 +HID LI ++ WS R+D + +ILR GV L + II E + IA + Sbjct: 61 LEHIDSLIRD-ISLNWSLERMDKVDLAILRMGVYSLKFQNFENSKRAIIDEAILIAKKYG 119 Query: 139 YGDEPKFINAVLDKVSRKEE 158 + KFIN +LD + + E Sbjct: 120 SKNSYKFINGILDALLKNME 139 >gi|119716645|ref|YP_923610.1| transcription antitermination factor NusB [Nocardioides sp. JS614] gi|166215705|sp|A1SJD8|NUSB_NOCSJ RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|119537306|gb|ABL81923.1| NusB antitermination factor [Nocardioides sp. JS614] Length = 135 Score = 55.5 bits (132), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 26/91 (28%), Positives = 50/91 (54%), Gaps = 1/91 (1%) Query: 67 EWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVI 126 ++ ++ GV++ + ID L+SS + W+ R+ + ++LR GV EL+ VP V Sbjct: 42 DYTATLVRGVVEHQARIDELLSSY-SHGWALDRMPAVDRNVLRLGVWELLYADDVPDAVA 100 Query: 127 ISEYVCIAHDFFYGDEPKFINAVLDKVSRKE 157 +SE + + D + P+F+N +L + R + Sbjct: 101 VSEAMALVTDLSTDESPQFVNGILGSIVRNK 131 >gi|300715571|ref|YP_003740374.1| N utilization substance protein B [Erwinia billingiae Eb661] gi|299061407|emb|CAX58517.1| N utilization substance protein B [Erwinia billingiae Eb661] Length = 139 Score = 55.5 bits (132), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 45/132 (34%), Positives = 69/132 (52%), Gaps = 13/132 (9%) Query: 23 AVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQH 82 AVQALY + + IS+ E Y+F A E DV+ V D+ +FR ++ GV + Sbjct: 13 AVQALYSWQL----SKNDISDVE-YQFLA--EQDVKDV----DISYFRELLVGVATNSAY 61 Query: 83 IDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDE 142 +D L+ L+ + L + +ILR + EL + VP +V I+E + +A F D Sbjct: 62 LDGLMKPYLSRQ--LEELGQVEKAILRISLFELSKRADVPYKVAINEGIELAKVFGAEDS 119 Query: 143 PKFINAVLDKVS 154 KF+N VLDK + Sbjct: 120 HKFVNGVLDKAA 131 >gi|229135004|ref|ZP_04263810.1| N utilization substance protein B [Bacillus cereus BDRD-ST196] gi|228648506|gb|EEL04535.1| N utilization substance protein B [Bacillus cereus BDRD-ST196] Length = 120 Score = 55.5 bits (132), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 41/130 (31%), Positives = 61/130 (46%), Gaps = 14/130 (10%) Query: 24 VQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHI 83 +QALYQ+DI G E E +T + E E+ ++ G +D K+ I Sbjct: 1 MQALYQMDITG--------ELEPKVAVENTLDEGEETN-----EFLESLVVGFVDNKEEI 47 Query: 84 DLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEP 143 D I L +KW R+ ++ SILR V E+ +P V I+E + IA F + Sbjct: 48 DAAIRQNL-KKWKLERISIVDRSILRVAVCEMKYMEEIPHNVTINEAIEIAKTFGDEESR 106 Query: 144 KFINAVLDKV 153 +FIN VL + Sbjct: 107 RFINGVLSNI 116 >gi|315282224|ref|ZP_07870678.1| transcription antitermination factor NusB [Listeria marthii FSL S4-120] gi|313614126|gb|EFR87816.1| transcription antitermination factor NusB [Listeria marthii FSL S4-120] Length = 128 Score = 55.5 bits (132), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 44/142 (30%), Positives = 66/142 (46%), Gaps = 21/142 (14%) Query: 15 RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74 +R AR A+QAL+QI++ S + I + + E D ++ ++ Sbjct: 2 KRREAREKALQALFQIELNEMSLDQAI------KNIMEDEQD----------DYMEKLVE 45 Query: 75 GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134 GVM K ID +I L + W RL + S+LR V E+ VP V ++E + IA Sbjct: 46 GVMANKAEIDAIIEPNL-DNWRMDRLSKVDLSLLRVSVYEIKYLDDVPNRVSLNESIEIA 104 Query: 135 HDFFYGDEP--KFINAVLDKVS 154 Y DE KFIN VL ++ Sbjct: 105 K--IYSDEKSSKFINGVLANIA 124 >gi|55821710|ref|YP_140152.1| transcription antitermination protein NusB [Streptococcus thermophilus LMG 18311] gi|55823630|ref|YP_142071.1| transcription antitermination protein NusB [Streptococcus thermophilus CNRZ1066] gi|116628433|ref|YP_821052.1| transcription antitermination protein NusB [Streptococcus thermophilus LMD-9] gi|81558964|sp|Q5LY62|NUSB_STRT1 RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|81560152|sp|Q5M2R7|NUSB_STRT2 RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|122266972|sp|Q03IW6|NUSB_STRTD RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|55737695|gb|AAV61337.1| transcriptional termination factor [Streptococcus thermophilus LMG 18311] gi|55739615|gb|AAV63256.1| transcriptional termination factor [Streptococcus thermophilus CNRZ1066] gi|116101710|gb|ABJ66856.1| Transcription termination factor [Streptococcus thermophilus LMD-9] gi|312279051|gb|ADQ63708.1| Transcription antitermination factor NusB [Streptococcus thermophilus ND03] Length = 144 Score = 55.5 bits (132), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 46/151 (30%), Positives = 70/151 (46%), Gaps = 18/151 (11%) Query: 3 IQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYL 62 +D+++DL R A Q L+ ++ G + + Y TY D +D E+ Sbjct: 5 FKDSRRDL---------RERAFQTLFALEFGGEALDQAYFAY-TY----DKPIDEET--- 47 Query: 63 HVDLEWFRV-IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSV 121 VDL F + ++ GV + +D I L E WS SRL M ++LR G+ E+ Sbjct: 48 EVDLPSFLLSLVTGVREELPQLDSQIEEKLKEGWSLSRLIMTDRTLLRLGLYEITSFEET 107 Query: 122 PVEVIISEYVCIAHDFFYGDEPKFINAVLDK 152 P V I+E + IA + KFIN VL + Sbjct: 108 PGRVAINEIIEIAKKYSDKTSAKFINGVLSQ 138 >gi|149177355|ref|ZP_01855960.1| transcription antitermination protein NusB [Planctomyces maris DSM 8797] gi|148843880|gb|EDL58238.1| transcription antitermination protein NusB [Planctomyces maris DSM 8797] Length = 171 Score = 55.5 bits (132), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 46/150 (30%), Positives = 70/150 (46%), Gaps = 27/150 (18%) Query: 16 RGIARLAAVQALYQIDIIG----CSTTEIISEY---ETYRFCADTELDVESVYLHVDLEW 68 R AR VQ LYQID+ E+I E+ +T R A W Sbjct: 4 RKQARFLVVQMLYQIDLNPDISINEIREMIEEHGRNKTARTFA----------------W 47 Query: 69 FRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIIS 128 + GVM+ KQ +D I + E W+ R+ + +ILR G EL+ + P V+I Sbjct: 48 --ELFTGVMEFKQQLDEHIVR-VAENWTLKRMAVTDRNILRLGTYELLHTDTPPA-VVID 103 Query: 129 EYVCIAHDFFYGDEPKFINAVLDKVSRKEE 158 E V +A +F +F+N +LDKV ++++ Sbjct: 104 EAVELAREFGSAHSSQFVNGILDKVVQRKD 133 >gi|256821700|ref|YP_003145663.1| NusB antitermination factor [Kangiella koreensis DSM 16069] gi|256795239|gb|ACV25895.1| NusB antitermination factor [Kangiella koreensis DSM 16069] Length = 142 Score = 55.5 bits (132), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 44/146 (30%), Positives = 69/146 (47%), Gaps = 14/146 (9%) Query: 10 LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF 69 K + RR AR A+QA+YQ + EI ++Y T VD +F Sbjct: 5 FKPAMRRR-AREYAMQAIYQWQMSDNPLNEIEAQYLTTMNAK-----------KVDTVYF 52 Query: 70 RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISE 129 + + GV+ ID ++ L + +D I +I+R EL + VP +V+I+E Sbjct: 53 QELFSGVLTNLDEIDEALAPALERE--IEGIDPIERAIIRLSAFELKKRVDVPKKVVINE 110 Query: 130 YVCIAHDFFYGDEPKFINAVLDKVSR 155 + +A F D KF+N VLDK+S+ Sbjct: 111 GIELAKTFGATDGHKFVNGVLDKISK 136 >gi|189499470|ref|YP_001958940.1| NusB antitermination factor [Chlorobium phaeobacteroides BS1] gi|238692264|sp|B3EM81|NUSB_CHLPB RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|189494911|gb|ACE03459.1| NusB antitermination factor [Chlorobium phaeobacteroides BS1] Length = 168 Score = 55.5 bits (132), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 43/154 (27%), Positives = 74/154 (48%), Gaps = 15/154 (9%) Query: 13 SHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVI 72 ++RR I R +QALY I++ G T + D+ + +++ + Sbjct: 3 TYRRRI-REKIIQALYTIELTGADMDSASDWLITPQIAEDSGA----------VRFYKQV 51 Query: 73 IHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVC 132 + + D K+ ID I+ T W SR+ +I +ILR + EL+ +P +V I+E + Sbjct: 52 LQSIQDHKEEIDGYITKH-TFNWDMSRIAIIDKNILRMALAELLYFEDIPPKVSINEAIE 110 Query: 133 IAHDFFYGDE-PKFINAVLDKVSRKEEIKRSGCV 165 IA F D+ KF+N +LD ++K SG + Sbjct: 111 IAKKFNSTDKSSKFVNGILDATY--NDLKSSGKI 142 >gi|123443366|ref|YP_001007340.1| transcription antitermination protein NusB [Yersinia enterocolitica subsp. enterocolitica 8081] gi|332160727|ref|YP_004297304.1| transcription antitermination protein NusB [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|166215729|sp|A1JNS2|NUSB_YERE8 RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|122090327|emb|CAL13193.1| N utilization substance protein B [Yersinia enterocolitica subsp. enterocolitica 8081] gi|318604606|emb|CBY26104.1| transcription termination protein NusB [Yersinia enterocolitica subsp. palearctica Y11] gi|325664957|gb|ADZ41601.1| transcription antitermination protein NusB [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|330863853|emb|CBX73946.1| N utilization substance protein B homolog [Yersinia enterocolitica W22703] Length = 138 Score = 55.5 bits (132), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 43/134 (32%), Positives = 65/134 (48%), Gaps = 17/134 (12%) Query: 23 AVQALYQIDIIGCSTTEIISEYETYRFCADTELDV--ESVYLHVDLEWFRVIIHGVMDRK 80 AVQALY + S +I AD EL E VD+ +FR ++ GV Sbjct: 13 AVQALYSWQL---SKNDI----------ADVELQFLSEQDVKDVDIAYFRELLSGVAVNA 59 Query: 81 QHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYG 140 +D L++ L+ + L + ++LR + EL + VP +V I+E + +A F Sbjct: 60 ASLDALMAPVLSRQ--LEELGQVERAVLRIALFELSKRDDVPYKVAINEAIELAKTFGAA 117 Query: 141 DEPKFINAVLDKVS 154 D KF+N VLDKV+ Sbjct: 118 DSHKFVNGVLDKVA 131 >gi|261822526|ref|YP_003260632.1| transcription antitermination protein NusB [Pectobacterium wasabiae WPP163] gi|261606539|gb|ACX89025.1| NusB antitermination factor [Pectobacterium wasabiae WPP163] Length = 139 Score = 55.5 bits (132), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 40/132 (30%), Positives = 67/132 (50%), Gaps = 13/132 (9%) Query: 23 AVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQH 82 AVQALY + ++ ++F +E DV+ V D+ +FR ++ GV + + Sbjct: 13 AVQALYSWQLSKNDIADV-----EHQFL--SEQDVKDV----DIAYFRELLAGVATQAEK 61 Query: 83 IDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDE 142 +D L++ L+ L + +ILR + EL + VP +V I+E + +A F D Sbjct: 62 LDQLMAPFLSR--HIDELGQVEKAILRLAMFELSKREDVPYKVAINEAIELAKTFGAEDS 119 Query: 143 PKFINAVLDKVS 154 KF+N VLDK + Sbjct: 120 HKFVNGVLDKAA 131 >gi|293376577|ref|ZP_06622805.1| transcription antitermination factor NusB [Turicibacter sanguinis PC909] gi|325839451|ref|ZP_08166890.1| transcription antitermination factor NusB [Turicibacter sp. HGF1] gi|292644803|gb|EFF62885.1| transcription antitermination factor NusB [Turicibacter sanguinis PC909] gi|325490571|gb|EGC92887.1| transcription antitermination factor NusB [Turicibacter sp. HGF1] Length = 159 Score = 55.5 bits (132), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 44/155 (28%), Positives = 72/155 (46%), Gaps = 16/155 (10%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTE---LDVESVYLHVDL------ 66 R + R AVQ LYQ+++ + E I E E L E V H L Sbjct: 3 RHVIRQFAVQTLYQMEVGQLTREEAIENIELMVESLKEEAIELMAEEVTPHQALQMEQTF 62 Query: 67 ---EWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPV 123 E++ +++GV+ K+ +D +I+ L WS SRL+ + +ILR E+ C Sbjct: 63 KLDEFYFELVNGVLTHKEQLDQIINDNL-RGWSLSRLNKVDKAILRLATYEMKYCQDTAK 121 Query: 124 EVIISEYVCIAHDFF---YGDEPKFINAVLDKVSR 155 +++I E + + +F G F N VLD++S+ Sbjct: 122 KIVIDEALELTKEFSDTGDGKARSFNNKVLDQISK 156 >gi|50120067|ref|YP_049234.1| transcription antitermination protein NusB [Pectobacterium atrosepticum SCRI1043] gi|81645878|sp|Q6D847|NUSB_ERWCT RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|49610593|emb|CAG74038.1| N utilization substance protein B [Pectobacterium atrosepticum SCRI1043] Length = 139 Score = 55.5 bits (132), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 40/132 (30%), Positives = 68/132 (51%), Gaps = 13/132 (9%) Query: 23 AVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQH 82 AVQALY + ++ ++F +E DV+ V D+ +FR ++ GV + + Sbjct: 13 AVQALYSWQLSKNDIADV-----EHQFL--SEQDVKDV----DITYFRELLAGVATQAEK 61 Query: 83 IDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDE 142 +D L++ L+ + L + +ILR + EL + VP +V I+E + +A F D Sbjct: 62 LDQLMAPFLSRR--IDELGQVEKAILRLAMFELSKREDVPYKVAINEAIELAKIFGAEDS 119 Query: 143 PKFINAVLDKVS 154 KF+N VLDK + Sbjct: 120 HKFVNGVLDKAA 131 >gi|238765184|ref|ZP_04626116.1| N utilization substance protein B [Yersinia kristensenii ATCC 33638] gi|238696618|gb|EEP89403.1| N utilization substance protein B [Yersinia kristensenii ATCC 33638] Length = 138 Score = 55.5 bits (132), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 43/134 (32%), Positives = 65/134 (48%), Gaps = 17/134 (12%) Query: 23 AVQALYQIDIIGCSTTEIISEYETYRFCADTELDV--ESVYLHVDLEWFRVIIHGVMDRK 80 AVQALY + S +I AD EL E VD+ +FR ++ GV Sbjct: 13 AVQALYSWQL---SKNDI----------ADVELQFLSEQDVKDVDIAYFRELLSGVAVNA 59 Query: 81 QHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYG 140 +D L++ L+ + L + ++LR + EL + VP +V I+E + +A F Sbjct: 60 ASLDALMAPVLSRQ--LEELGQVERAVLRIALFELSKRDDVPYKVAINEAIELAKTFGAA 117 Query: 141 DEPKFINAVLDKVS 154 D KF+N VLDKV+ Sbjct: 118 DSHKFVNGVLDKVA 131 >gi|73748962|ref|YP_308201.1| N utilization substance protein B [Dehalococcoides sp. CBDB1] gi|147669729|ref|YP_001214547.1| NusB antitermination factor [Dehalococcoides sp. BAV1] gi|289432959|ref|YP_003462832.1| NusB antitermination factor [Dehalococcoides sp. GT] gi|119390765|sp|Q3ZYI9|NUSB_DEHSC RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|189035888|sp|A5FQ51|NUSB_DEHSB RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|73660678|emb|CAI83285.1| N utilization substance protein B [Dehalococcoides sp. CBDB1] gi|146270677|gb|ABQ17669.1| NusB antitermination factor [Dehalococcoides sp. BAV1] gi|288946679|gb|ADC74376.1| NusB antitermination factor [Dehalococcoides sp. GT] Length = 143 Score = 55.1 bits (131), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 44/146 (30%), Positives = 71/146 (48%), Gaps = 16/146 (10%) Query: 12 LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71 ++ R AR +QALY+ D+ G + +++ T TE +VE + FR Sbjct: 1 MTTSRRKAREIVLQALYEQDLAGHNAEDVLKRLLTEN--PQTEENVEFI--------FR- 49 Query: 72 IIHGVMDRKQHIDLLISSC--LTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISE 129 + + V+ +H DLL + W +L I ++LR + E+I + VPV+V I+E Sbjct: 50 LTNAVV---KHKDLLDENIRQFASAWPVEQLSYIDRNVLRLAIFEIIHENDVPVKVAINE 106 Query: 130 YVCIAHDFFYGDEPKFINAVLDKVSR 155 V +A F +FIN VL VS+ Sbjct: 107 AVELAKSFGGNSSARFINGVLSSVSK 132 >gi|15615348|ref|NP_243651.1| transcription antitermination protein NusB [Bacillus halodurans C-125] gi|20139208|sp|Q9K965|NUSB_BACHD RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|10175406|dbj|BAB06504.1| transcriptional terminator [Bacillus halodurans C-125] Length = 134 Score = 55.1 bits (131), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 40/143 (27%), Positives = 64/143 (44%), Gaps = 25/143 (17%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEY-----ETYRFCADTELDVESVYLHVDLEWFR 70 R ++RL AVQALYQ+D+I S + I E F +D Sbjct: 3 RRLSRLRAVQALYQMDVIDTSMEKAIESVLDEGEEASSFMSD------------------ 44 Query: 71 VIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEY 130 ++ G + ++ +D L + L + W+ R+ + +ILR + EL +P V +E Sbjct: 45 -LVSGTVTHQEELDRLYADHL-QGWTVDRIGNVDRAILRMALYELYYVDDIPKNVSFNEA 102 Query: 131 VCIAHDFFYGDEPKFINAVLDKV 153 + +A F D +FIN VL K Sbjct: 103 IELAKAFGGEDAGRFINGVLSKT 125 >gi|91225065|ref|ZP_01260287.1| transcription antitermination protein NusB [Vibrio alginolyticus 12G01] gi|262395030|ref|YP_003286884.1| transcription termination protein NusB [Vibrio sp. Ex25] gi|269965074|ref|ZP_06179239.1| N utilization substance protein B [Vibrio alginolyticus 40B] gi|91190008|gb|EAS76279.1| transcription antitermination protein NusB [Vibrio alginolyticus 12G01] gi|262338624|gb|ACY52419.1| transcription termination protein NusB [Vibrio sp. Ex25] gi|269830377|gb|EEZ84602.1| N utilization substance protein B [Vibrio alginolyticus 40B] Length = 155 Score = 55.1 bits (131), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 42/148 (28%), Positives = 72/148 (48%), Gaps = 6/148 (4%) Query: 10 LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYL---HVDL 66 +K + RR AR A+QA+Y I + +I ++ + + EL L D+ Sbjct: 5 VKPAARRN-ARQFALQAIYSWQITKENVAKIEEQFLSGDKYDEEELHASEPALAAPETDV 63 Query: 67 EWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVI 126 +FR ++ GV+ +D I ++ LDM+ ++LR + E+ VP +V+ Sbjct: 64 AYFRELLSGVVLSHAELDSKIRPYISR--PMQDLDMMELALLRLAMYEMTRREDVPYKVV 121 Query: 127 ISEYVCIAHDFFYGDEPKFINAVLDKVS 154 I+E + +A F D KF+N VLDK + Sbjct: 122 INEAIELAKVFAAEDSHKFVNGVLDKAA 149 >gi|291550246|emb|CBL26508.1| transcription antitermination factor NusB [Ruminococcus torques L2-14] Length = 139 Score = 55.1 bits (131), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 31/91 (34%), Positives = 50/91 (54%), Gaps = 1/91 (1%) Query: 65 DLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVE 124 D E+ + V+++ + ID LI++ + W +R++ + SILR V E+ VPV Sbjct: 43 DKEYIKRKYAAVLEKTEEIDELINAN-AKGWKTTRMNKVDLSILRLAVYEMKWDDEVPVG 101 Query: 125 VIISEYVCIAHDFFYGDEPKFINAVLDKVSR 155 V I+E V + F + P FIN VL K++R Sbjct: 102 VAINEAVELTKTFSSDEAPSFINGVLGKIAR 132 >gi|134098647|ref|YP_001104308.1| NusB antitermination factor [Saccharopolyspora erythraea NRRL 2338] gi|291003667|ref|ZP_06561640.1| NusB antitermination factor [Saccharopolyspora erythraea NRRL 2338] gi|166918811|sp|A4FBF8|NUSB_SACEN RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|133911270|emb|CAM01383.1| NusB antitermination factor [Saccharopolyspora erythraea NRRL 2338] Length = 148 Score = 55.1 bits (131), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 41/141 (29%), Positives = 64/141 (45%), Gaps = 16/141 (11%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 R AR AV LY+ D+ G ++S V S L E+ ++ G Sbjct: 4 RNKARKRAVDVLYEADLRGEDAVTLLSGR------------VGSPDLPPVNEYTVTLVEG 51 Query: 76 VMDRKQHID-LLISSCLTEKWSFSRLDMILCSILRAGVLELI-ECHSVPVEVIISEYVCI 133 V +Q ID LL+ E W+ +R+ + ++LR G+ EL+ VP V I E V + Sbjct: 52 VTANRQRIDELLVEHA--EGWTLARMPAVDRAVLRLGLYELLWRSDDVPPAVAIDEAVEL 109 Query: 134 AHDFFYGDEPKFINAVLDKVS 154 D P+F+N VL +++ Sbjct: 110 VKALSTDDSPRFVNGVLGRIA 130 >gi|253687422|ref|YP_003016612.1| NusB antitermination factor [Pectobacterium carotovorum subsp. carotovorum PC1] gi|259514866|sp|C6DB34|NUSB_PECCP RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|251754000|gb|ACT12076.1| NusB antitermination factor [Pectobacterium carotovorum subsp. carotovorum PC1] Length = 139 Score = 55.1 bits (131), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 40/132 (30%), Positives = 68/132 (51%), Gaps = 13/132 (9%) Query: 23 AVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQH 82 AVQALY + ++ ++F +E DV+ V D+ +FR ++ GV + + Sbjct: 13 AVQALYSWQLSKNDIADV-----EHQFL--SEQDVKDV----DITYFRELLAGVATQAEK 61 Query: 83 IDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDE 142 +D L++ L+ + L + +ILR + EL + VP +V I+E + +A F D Sbjct: 62 LDQLMAPFLSRQ--IEELGQVEKAILRLAMFELSKREDVPYKVAINEAIELAKVFGAEDS 119 Query: 143 PKFINAVLDKVS 154 KF+N VLDK + Sbjct: 120 HKFVNGVLDKAA 131 >gi|157150386|ref|YP_001451127.1| transcription antitermination protein NusB [Streptococcus gordonii str. Challis substr. CH1] gi|157075180|gb|ABV09863.1| transcription antitermination factor NusB [Streptococcus gordonii str. Challis substr. CH1] Length = 137 Score = 55.1 bits (131), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 28/86 (32%), Positives = 46/86 (53%) Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131 +++GVM K +D I+ L W+ RL ++ +ILR G+ EL+E P V ++E + Sbjct: 52 LVNGVMQSKSELDDKITQYLKSGWTLDRLTLVEKNILRLGLYELLEYDETPQLVAVNEAI 111 Query: 132 CIAHDFFYGDEPKFINAVLDKVSRKE 157 +A F KFIN +L + +E Sbjct: 112 ELAKKFSDEKSSKFINGILSQFVTEE 137 >gi|206577191|ref|YP_002240116.1| transcription antitermination factor NusB [Klebsiella pneumoniae 342] gi|288936865|ref|YP_003440924.1| NusB antitermination factor [Klebsiella variicola At-22] gi|290510079|ref|ZP_06549449.1| transcription antitermination factor NusB [Klebsiella sp. 1_1_55] gi|238055476|sp|B5Y0X5|NUSB_KLEP3 RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|206566249|gb|ACI08025.1| transcription antitermination factor NusB [Klebsiella pneumoniae 342] gi|288891574|gb|ADC59892.1| NusB antitermination factor [Klebsiella variicola At-22] gi|289776795|gb|EFD84793.1| transcription antitermination factor NusB [Klebsiella sp. 1_1_55] Length = 139 Score = 55.1 bits (131), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 41/132 (31%), Positives = 66/132 (50%), Gaps = 13/132 (9%) Query: 23 AVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQH 82 AVQALY + ++ Y+F A E DV+ V D+ +FR ++ GV + Sbjct: 13 AVQALYSWQLSHNDIADV-----EYQFLA--EQDVKDV----DVLYFRELLSGVATNSAY 61 Query: 83 IDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDE 142 +D L+ L+ + L + ++LR + EL + VP +V I+E + +A F D Sbjct: 62 LDGLMKPYLSRQ--LEELGQVEKAVLRIALFELSKRDDVPYKVAINEAIELAKTFGAEDS 119 Query: 143 PKFINAVLDKVS 154 KF+N VLDK + Sbjct: 120 HKFVNGVLDKAA 131 >gi|190572778|ref|YP_001970623.1| transcription antitermination protein NusB [Stenotrophomonas maltophilia K279a] gi|229620370|sp|B2FNL4|NUSB_STRMK RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|190010700|emb|CAQ44309.1| putative N utilization substance protein B (protein nusb) [Stenotrophomonas maltophilia K279a] Length = 159 Score = 55.1 bits (131), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 39/139 (28%), Positives = 64/139 (46%), Gaps = 13/139 (9%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 R AR AVQA+Y I G + +I++ F + ++ DL +F ++HG Sbjct: 24 RSRARRRAVQAIYAWQISGGNAQSLIAQ-----FAHEQAREI------ADLAYFEALLHG 72 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135 V+D ++ ID + L +D I ++LR EL VP V+I+E + A Sbjct: 73 VLDNRRDIDEALGPYLDR--GIEEVDAIERAVLRLAGYELRYRLDVPYRVVINEAIESAK 130 Query: 136 DFFYGDEPKFINAVLDKVS 154 F ++N VLD+ + Sbjct: 131 RFGSEHGHTYVNGVLDRAA 149 >gi|167470223|ref|ZP_02334927.1| transcription antitermination factor NusB [Yersinia pestis FV-1] Length = 137 Score = 55.1 bits (131), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 45/138 (32%), Positives = 67/138 (48%), Gaps = 17/138 (12%) Query: 19 ARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDV--ESVYLHVDLEWFRVIIHGV 76 AR AVQALY + S +I AD EL E VD+ +FR ++ GV Sbjct: 8 ARECAVQALYSWQL---SKNDI----------ADVELQFLSEQDVKDVDIAYFRELLSGV 54 Query: 77 MDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHD 136 +D L++ L+ + L + ++LR + EL + VP +V I+E + +A Sbjct: 55 AVNAASLDALMAPFLSRQ--LEELGQVERAVLRIALFELSKRDDVPYKVAINEAIELAKT 112 Query: 137 FFYGDEPKFINAVLDKVS 154 F D KF+N VLDKV+ Sbjct: 113 FGAEDSHKFVNGVLDKVA 130 >gi|227113444|ref|ZP_03827100.1| transcription antitermination protein NusB [Pectobacterium carotovorum subsp. brasiliensis PBR1692] Length = 139 Score = 55.1 bits (131), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 40/132 (30%), Positives = 68/132 (51%), Gaps = 13/132 (9%) Query: 23 AVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQH 82 AVQALY + ++ ++F +E DV+ V D+ +FR ++ GV + + Sbjct: 13 AVQALYSWQLSKNDIADV-----EHQFL--SEQDVKDV----DITYFRELLAGVATQAEK 61 Query: 83 IDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDE 142 +D L++ L+ + L + +ILR + EL + VP +V I+E + +A F D Sbjct: 62 LDQLMAPFLSRQ--IEELGQVEKAILRLAMFELSKREDVPYKVAINEAIELAKIFGAEDS 119 Query: 143 PKFINAVLDKVS 154 KF+N VLDK + Sbjct: 120 HKFVNGVLDKAA 131 >gi|152968941|ref|YP_001334050.1| transcription antitermination protein NusB [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|238893353|ref|YP_002918087.1| transcription antitermination protein NusB [Klebsiella pneumoniae NTUH-K2044] gi|330006911|ref|ZP_08305783.1| transcription antitermination factor NusB [Klebsiella sp. MS 92-3] gi|166215693|sp|A6T5E9|NUSB_KLEP7 RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|150953790|gb|ABR75820.1| transcription antitermination protein NusB [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|238545669|dbj|BAH62020.1| transcription antitermination protein [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044] gi|328535665|gb|EGF62114.1| transcription antitermination factor NusB [Klebsiella sp. MS 92-3] Length = 139 Score = 55.1 bits (131), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 41/132 (31%), Positives = 66/132 (50%), Gaps = 13/132 (9%) Query: 23 AVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQH 82 AVQALY + ++ Y+F A E DV+ V D+ +FR ++ GV + Sbjct: 13 AVQALYSWQLSHNDIADV-----EYQFLA--EQDVKDV----DVLYFRELLSGVATNSAY 61 Query: 83 IDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDE 142 +D L+ L+ + L + ++LR + EL + VP +V I+E + +A F D Sbjct: 62 LDGLMKPYLSRQ--LEELGQVEKAVLRIALFELSKRDDVPYKVAINEAIELAKTFGAEDS 119 Query: 143 PKFINAVLDKVS 154 KF+N VLDK + Sbjct: 120 HKFVNGVLDKAA 131 >gi|295396131|ref|ZP_06806314.1| transcription antitermination factor NusB [Brevibacterium mcbrellneri ATCC 49030] gi|294971072|gb|EFG46964.1| transcription antitermination factor NusB [Brevibacterium mcbrellneri ATCC 49030] Length = 134 Score = 55.1 bits (131), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 28/86 (32%), Positives = 49/86 (56%), Gaps = 1/86 (1%) Query: 70 RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISE 129 R I+ GV+ + +D LIS+ W+ R+ + ++LR G+ E++ V V I E Sbjct: 45 REIVDGVVTHRAQLDELISTY-AHGWTLERMPRVDRAVLRIGLWEILYNDEVDDPVAIDE 103 Query: 130 YVCIAHDFFYGDEPKFINAVLDKVSR 155 V +A ++ D P F+NA+LD++S+ Sbjct: 104 AVTLAKEYSTDDSPAFVNALLDRISK 129 >gi|197301786|ref|ZP_03166856.1| hypothetical protein RUMLAC_00512 [Ruminococcus lactaris ATCC 29176] gi|197299226|gb|EDY33756.1| hypothetical protein RUMLAC_00512 [Ruminococcus lactaris ATCC 29176] Length = 140 Score = 55.1 bits (131), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 30/73 (41%), Positives = 42/73 (57%), Gaps = 1/73 (1%) Query: 83 IDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDE 142 ID LI+ + W +R++ + +ILR V E+ VPV V I+E V +A F GD Sbjct: 61 IDELINQY-AKGWKTTRMNKVDLAILRLAVYEMKWDEEVPVGVAINEAVELAKRFSGGDS 119 Query: 143 PKFINAVLDKVSR 155 P FIN VL K++R Sbjct: 120 PSFINGVLGKIAR 132 >gi|16803399|ref|NP_464884.1| transcription antitermination protein NusB [Listeria monocytogenes EGD-e] gi|46907585|ref|YP_013974.1| transcription antitermination protein NusB [Listeria monocytogenes serotype 4b str. F2365] gi|47093746|ref|ZP_00231496.1| N utilization substance protein B [Listeria monocytogenes str. 4b H7858] gi|47095942|ref|ZP_00233545.1| N utilization substance protein B [Listeria monocytogenes str. 1/2a F6854] gi|224499938|ref|ZP_03668287.1| transcription antitermination protein NusB [Listeria monocytogenes Finland 1988] gi|224501698|ref|ZP_03670005.1| transcription antitermination protein NusB [Listeria monocytogenes FSL R2-561] gi|226223960|ref|YP_002758067.1| transcription termination protein (NusB) [Listeria monocytogenes Clip81459] gi|254824582|ref|ZP_05229583.1| transcription antitermination protein NusB [Listeria monocytogenes FSL J1-194] gi|254827620|ref|ZP_05232307.1| transcription antitermination protein NusB [Listeria monocytogenes FSL N3-165] gi|254852593|ref|ZP_05241941.1| transcription antitermination protein NusB [Listeria monocytogenes FSL R2-503] gi|254898476|ref|ZP_05258400.1| transcription antitermination protein NusB [Listeria monocytogenes J0161] gi|254912033|ref|ZP_05262045.1| transcription antitermination protein NusB [Listeria monocytogenes J2818] gi|254932326|ref|ZP_05265685.1| N utilization substance protein B [Listeria monocytogenes HPB2262] gi|254936360|ref|ZP_05268057.1| transcription antitermination protein NusB [Listeria monocytogenes F6900] gi|254994167|ref|ZP_05276357.1| transcription antitermination protein NusB [Listeria monocytogenes FSL J2-064] gi|255018100|ref|ZP_05290226.1| transcription antitermination protein NusB [Listeria monocytogenes FSL F2-515] gi|255029814|ref|ZP_05301765.1| transcription antitermination protein NusB [Listeria monocytogenes LO28] gi|255520789|ref|ZP_05388026.1| transcription antitermination protein NusB [Listeria monocytogenes FSL J1-175] gi|284801744|ref|YP_003413609.1| transcription antitermination protein NusB [Listeria monocytogenes 08-5578] gi|284994886|ref|YP_003416654.1| transcription antitermination protein NusB [Listeria monocytogenes 08-5923] gi|300765401|ref|ZP_07075383.1| hypothetical protein LMHG_12558 [Listeria monocytogenes FSL N1-017] gi|22095949|sp|Q8Y7C6|NUSB_LISMO RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|67460884|sp|Q71ZW3|NUSB_LISMF RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|259514854|sp|C1L2R5|NUSB_LISMC RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|16410775|emb|CAC99437.1| lmo1359 [Listeria monocytogenes EGD-e] gi|46880853|gb|AAT04151.1| N utilization substance protein B [Listeria monocytogenes serotype 4b str. F2365] gi|47015688|gb|EAL06618.1| N utilization substance protein B [Listeria monocytogenes str. 1/2a F6854] gi|47017867|gb|EAL08650.1| N utilization substance protein B [Listeria monocytogenes str. 4b H7858] gi|225876422|emb|CAS05131.1| Putative transcription termination protein (NusB) [Listeria monocytogenes serotype 4b str. CLIP 80459] gi|258599998|gb|EEW13323.1| transcription antitermination protein NusB [Listeria monocytogenes FSL N3-165] gi|258605906|gb|EEW18514.1| transcription antitermination protein NusB [Listeria monocytogenes FSL R2-503] gi|258608951|gb|EEW21559.1| transcription antitermination protein NusB [Listeria monocytogenes F6900] gi|284057306|gb|ADB68247.1| transcription antitermination protein NusB [Listeria monocytogenes 08-5578] gi|284060353|gb|ADB71292.1| transcription antitermination protein NusB [Listeria monocytogenes 08-5923] gi|293583882|gb|EFF95914.1| N utilization substance protein B [Listeria monocytogenes HPB2262] gi|293589999|gb|EFF98333.1| transcription antitermination protein NusB [Listeria monocytogenes J2818] gi|293593820|gb|EFG01581.1| transcription antitermination protein NusB [Listeria monocytogenes FSL J1-194] gi|300513838|gb|EFK40903.1| hypothetical protein LMHG_12558 [Listeria monocytogenes FSL N1-017] gi|328467497|gb|EGF38566.1| transcription antitermination protein NusB [Listeria monocytogenes 1816] gi|328475073|gb|EGF45861.1| transcription antitermination protein NusB [Listeria monocytogenes 220] gi|332311800|gb|EGJ24895.1| N pathway substance protein [Listeria monocytogenes str. Scott A] Length = 128 Score = 55.1 bits (131), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 44/142 (30%), Positives = 66/142 (46%), Gaps = 21/142 (14%) Query: 15 RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74 +R AR A+QAL+QI++ S + I + + E D ++ ++ Sbjct: 2 KRREAREKALQALFQIELNEMSLDQAI------KNIMEDEQD----------DYMEKLVE 45 Query: 75 GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134 GVM K ID +I L + W RL + S+LR V E+ VP V ++E + IA Sbjct: 46 GVMANKAEIDAIIEPNL-DNWRMDRLSKVDLSLLRLSVYEIKYLDDVPNRVSLNESIEIA 104 Query: 135 HDFFYGDEP--KFINAVLDKVS 154 Y DE KFIN VL ++ Sbjct: 105 K--IYSDEKSSKFINGVLANIA 124 >gi|322386860|ref|ZP_08060484.1| N utilization substance protein B [Streptococcus cristatus ATCC 51100] gi|321269142|gb|EFX52078.1| N utilization substance protein B [Streptococcus cristatus ATCC 51100] Length = 145 Score = 55.1 bits (131), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 41/145 (28%), Positives = 70/145 (48%), Gaps = 10/145 (6%) Query: 9 DLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEW 68 D+ L RR + R A QAL ++ G + E RF + D E V++ Sbjct: 3 DVLLESRREL-RQRAFQALMSLEYEGDAI-------EACRFAYTYDKDEEETDAEVNIPA 54 Query: 69 FRV-IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVII 127 F + ++ GV+ K+ +D I+ L W+ RL ++ +ILR G+ E+ E + P V + Sbjct: 55 FLLNLVTGVLQSKEELDKKIAQHLKAGWTVERLTLVEKNILRLGIFEMTEFDT-PERVAV 113 Query: 128 SEYVCIAHDFFYGDEPKFINAVLDK 152 +E + ++ F KFIN +L + Sbjct: 114 NEAIELSKQFSDEKSSKFINGILSQ 138 >gi|300087424|ref|YP_003757946.1| NusB antitermination factor [Dehalogenimonas lykanthroporepellens BL-DC-9] gi|299527157|gb|ADJ25625.1| NusB antitermination factor [Dehalogenimonas lykanthroporepellens BL-DC-9] Length = 136 Score = 55.1 bits (131), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 41/140 (29%), Positives = 71/140 (50%), Gaps = 12/140 (8%) Query: 15 RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74 RR AR+ A+++LY++D+ G ++I E A+ ++E++ + I+ Sbjct: 3 RRHQARIVALKSLYEVDLTGHDPDKVI---ERRLLFAELGPELETLA--------QSILA 51 Query: 75 GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134 G + ++ D LI L + +L + +ILR + E+I + VPV V I+E V +A Sbjct: 52 GTLAAREEADSLIYR-LAPTYPVDQLAPVDRNILRLAIYEIIHDNKVPVRVAINEAVELA 110 Query: 135 HDFFYGDEPKFINAVLDKVS 154 +F KFIN VL V+ Sbjct: 111 KEFGSDGSAKFINGVLSSVA 130 >gi|38233925|ref|NP_939692.1| transcription antitermination protein NusB [Corynebacterium diphtheriae NCTC 13129] gi|81564845|sp|Q6NH08|NUSB_CORDI RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|38200186|emb|CAE49867.1| Putative transcription termination related protein [Corynebacterium diphtheriae] Length = 182 Score = 55.1 bits (131), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 42/168 (25%), Positives = 76/168 (45%), Gaps = 7/168 (4%) Query: 1 MTIQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESV 60 M Q+ + K R AR AV L++ ++ I+ + T+++ Sbjct: 1 MKSQETRSSWKRRGSRYKARRRAVDILFEAEMRDIDPVAIVEDRVVLSRLNGTDVNQVPS 60 Query: 61 YLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHS 120 Y + I+ G +D LI++ L E WS R+ + +ILR V ELI Sbjct: 61 YT-------KEIVSGAAMELDRLDELIAAHLAEDWSLERIMTVDRAILRVSVWELIFNPD 113 Query: 121 VPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRSGCVSAI 168 VP+ I E V +A ++ P +++A+LD +++ + R+G V+ + Sbjct: 114 VPLATAIIEGVELASEYSTDVSPAYVHALLDSIAKNIDEYRAGSVTPV 161 >gi|94986598|ref|YP_594531.1| transcription termination factor [Lawsonia intracellularis PHE/MN1-00] gi|119390780|sp|Q1MS16|NUSB_LAWIP RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|94730847|emb|CAJ54209.1| transcription termination factor [Lawsonia intracellularis PHE/MN1-00] Length = 161 Score = 55.1 bits (131), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 45/150 (30%), Positives = 66/150 (44%), Gaps = 20/150 (13%) Query: 14 HRRGIARLAAVQALYQIDIIGCSTTEIISE--------YETYRFCADTELDVESVYLHVD 65 H R I R A Q LY + +T E + E E TELD + + Sbjct: 7 HSRRIDRTKAFQVLYSLHFTQINTIETLKEIFLNLPNPLEERNTGIITELDTQ-----IS 61 Query: 66 LEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEV 125 W ++ GV +D +IS ++ W RL I ++LR E+ C VP +V Sbjct: 62 FSW--QLVEGVWRNVTRLDKIISQ-FSQNWRVDRLGKIELTLLRIATFEMYYCPDVPPKV 118 Query: 126 IISEYVCIAHDFFYGDEP--KFINAVLDKV 153 ++E + +A F GDE KFIN +LD + Sbjct: 119 SLNEALELATCF--GDEKARKFINGILDAI 146 >gi|284006399|emb|CBA71635.1| N utilization substance protein B [Arsenophonus nasoniae] Length = 137 Score = 55.1 bits (131), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 42/138 (30%), Positives = 69/138 (50%), Gaps = 13/138 (9%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 R AR AVQA+Y + G S ++ E+ T E D+ +VD+ +FR +++G Sbjct: 6 RHRARECAVQAIYSWQLSGNSIADVEEEFLT-------EQDMS----NVDVTYFRELLNG 54 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135 V +D ++ L+ + L + ++LR + EL + VP +V I+E + +A Sbjct: 55 VSTHVSELDKKMAPYLSRQ--LEELGQVEKAVLRLAMFELCYRNDVPYKVAINEAIELAK 112 Query: 136 DFFYGDEPKFINAVLDKV 153 F + KFIN LDKV Sbjct: 113 VFGAEESHKFINGALDKV 130 >gi|197119391|ref|YP_002139818.1| transcription antitermination factor NusB [Geobacter bemidjiensis Bem] gi|238690857|sp|B5E853|NUSB_GEOBB RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|197088751|gb|ACH40022.1| transcription antitermination factor NusB [Geobacter bemidjiensis Bem] Length = 145 Score = 55.1 bits (131), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 40/143 (27%), Positives = 71/143 (49%), Gaps = 8/143 (5%) Query: 13 SHRRGIARLAAVQALYQIDII-GCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71 + R G R A+QALY D++ + T + E++ + L V S E Sbjct: 3 TRREG--RELALQALYSKDLVLQDANTTLKRITESFSEGEEPTLSVNSKAYAFASE---- 56 Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131 +++GV+ Q ID I+ ++ WS +R+ + +ILR V EL+ +P V ++E + Sbjct: 57 LVNGVVSNLQAIDSRIAEK-SKHWSMARMARVDLNILRLAVFELLYRPDIPKNVTMNEAI 115 Query: 132 CIAHDFFYGDEPKFINAVLDKVS 154 +A F D F+N +LD+++ Sbjct: 116 EVAKKFGADDSASFVNGILDEIA 138 >gi|116872790|ref|YP_849571.1| transcription antitermination protein NusB [Listeria welshimeri serovar 6b str. SLCC5334] gi|123466249|sp|A0AIG0|NUSB_LISW6 RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|116741668|emb|CAK20792.1| N utilization substance protein B/transcription termination factor [Listeria welshimeri serovar 6b str. SLCC5334] Length = 128 Score = 55.1 bits (131), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 44/142 (30%), Positives = 66/142 (46%), Gaps = 21/142 (14%) Query: 15 RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74 +R AR A+QAL+QI++ S + I + + E D ++ ++ Sbjct: 2 KRREAREKALQALFQIELNEMSLDQAI------KNIMEDEQD----------DYMEKLVE 45 Query: 75 GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134 GVM K ID +I L + W RL + S+LR V E+ VP V ++E + IA Sbjct: 46 GVMANKAEIDAIIEPNL-DNWRMDRLSKVDLSLLRLSVYEINYLDDVPNRVSLNESIEIA 104 Query: 135 HDFFYGDEP--KFINAVLDKVS 154 Y DE KFIN VL ++ Sbjct: 105 K--IYSDEKSSKFINGVLANIA 124 >gi|332799350|ref|YP_004460849.1| NusB antitermination factor [Tepidanaerobacter sp. Re1] gi|332697085|gb|AEE91542.1| NusB antitermination factor [Tepidanaerobacter sp. Re1] Length = 135 Score = 54.7 bits (130), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 48/141 (34%), Positives = 71/141 (50%), Gaps = 17/141 (12%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 R IAR A + L+ ID+ G +T E SE F D + +S L+ + G Sbjct: 3 RKIAREQAFKILFAIDV-GNNTVEEASEI-VIEFLKDE--NQKSFILNE--------VRG 50 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135 V+ +ID++I+ ++ WS R+ +ILR V ELI +P+ V I+E V IA Sbjct: 51 VLKNLSNIDIIINKY-SDDWSIDRMAATDRNILRLAVYELIYSQDIPISVSINEAVEIAK 109 Query: 136 DFFYGDEP--KFINAVLDKVS 154 YGDE KFIN +L ++ Sbjct: 110 K--YGDEHSYKFINGLLGSIA 128 >gi|289434640|ref|YP_003464512.1| transcription antitermination factor [Listeria seeligeri serovar 1/2b str. SLCC3954] gi|315303024|ref|ZP_07873735.1| transcription antitermination factor NusB [Listeria ivanovii FSL F6-596] gi|289170884|emb|CBH27426.1| transcription antitermination factor [Listeria seeligeri serovar 1/2b str. SLCC3954] gi|313628606|gb|EFR97028.1| transcription antitermination factor NusB [Listeria ivanovii FSL F6-596] gi|313633359|gb|EFS00202.1| transcription antitermination factor NusB [Listeria seeligeri FSL N1-067] gi|313638045|gb|EFS03323.1| transcription antitermination factor NusB [Listeria seeligeri FSL S4-171] Length = 128 Score = 54.7 bits (130), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 44/142 (30%), Positives = 66/142 (46%), Gaps = 21/142 (14%) Query: 15 RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74 +R AR A+QAL+QI++ S + I + + E D ++ ++ Sbjct: 2 KRREAREKALQALFQIELNEMSLDQAI------KNIMEDEQD----------DYMEKLVE 45 Query: 75 GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134 GVM K ID +I L + W RL + S+LR V E+ VP V ++E + IA Sbjct: 46 GVMANKAEIDAIIEPNL-DNWRMDRLSKVDLSLLRLSVYEINYLSDVPNRVSLNESIEIA 104 Query: 135 HDFFYGDEP--KFINAVLDKVS 154 Y DE KFIN VL ++ Sbjct: 105 K--IYSDEKSSKFINGVLANIA 124 >gi|54293711|ref|YP_126126.1| hypothetical protein lpl0764 [Legionella pneumophila str. Lens] gi|54296754|ref|YP_123123.1| hypothetical protein lpp0793 [Legionella pneumophila str. Paris] gi|148360619|ref|YP_001251826.1| transcription termination factor NusB [Legionella pneumophila str. Corby] gi|296106315|ref|YP_003618015.1| N utilization substance protein B [Legionella pneumophila 2300/99 Alcoy] gi|81601476|sp|Q5WYH2|NUSB_LEGPL RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|81601958|sp|Q5X720|NUSB_LEGPA RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|166215694|sp|A5IGI0|NUSB_LEGPC RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|53750539|emb|CAH11941.1| hypothetical protein lpp0793 [Legionella pneumophila str. Paris] gi|53753543|emb|CAH14998.1| hypothetical protein lpl0764 [Legionella pneumophila str. Lens] gi|148282392|gb|ABQ56480.1| transcription termination factor NusB [Legionella pneumophila str. Corby] gi|295648216|gb|ADG24063.1| N utilization substance protein B [Legionella pneumophila 2300/99 Alcoy] gi|307609522|emb|CBW99020.1| hypothetical protein LPW_08051 [Legionella pneumophila 130b] Length = 147 Score = 54.7 bits (130), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 39/139 (28%), Positives = 71/139 (51%), Gaps = 15/139 (10%) Query: 19 ARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMD 78 AR A+QALYQ + G EI +++ T +D VD E+F +++G+ Sbjct: 12 ARKFALQALYQWLMSGTDLHEIEAQFRTI-----NNMD------KVDGEYFCRLLYGI-- 58 Query: 79 RKQHIDLLISSCLTE-KWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDF 137 H++ L +S L + L+ I ++LR G EL C +P +VI+ E V + +F Sbjct: 59 -PTHVEALEASLLPYLDREINALNPIELTVLRIGSFELFHCPEIPYKVILDESVSLTKEF 117 Query: 138 FYGDEPKFINAVLDKVSRK 156 + +++N VL+ ++++ Sbjct: 118 GSQEGYRYVNGVLNNLAKQ 136 >gi|169333804|ref|ZP_02860997.1| hypothetical protein ANASTE_00190 [Anaerofustis stercorihominis DSM 17244] gi|169259369|gb|EDS73335.1| hypothetical protein ANASTE_00190 [Anaerofustis stercorihominis DSM 17244] Length = 132 Score = 54.7 bits (130), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 28/90 (31%), Positives = 49/90 (54%), Gaps = 1/90 (1%) Query: 67 EWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVI 126 E+ + + G++D + ID I L + W F RL + ++LR GV E++ +P V Sbjct: 42 EYAKKTVKGILDNLEEIDDTIKDNL-KGWKFERLSTHVIAVLRLGVFEIMYNEDIPPLVG 100 Query: 127 ISEYVCIAHDFFYGDEPKFINAVLDKVSRK 156 ++E V +AH + E F+N +L+ V +K Sbjct: 101 LNEAVSLAHTYSDEKEATFVNGLLNSVYKK 130 >gi|328472533|gb|EGF43396.1| transcription antitermination protein NusB [Vibrio parahaemolyticus 10329] Length = 151 Score = 54.7 bits (130), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 42/148 (28%), Positives = 71/148 (47%), Gaps = 6/148 (4%) Query: 10 LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYL---HVDL 66 +K + RR AR A+QA+Y I + I ++ + + EL L D+ Sbjct: 1 MKPAARRN-ARQFALQAIYSWQITKENVATIEEQFLSGDKYDEEELRASEPALAAPETDV 59 Query: 67 EWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVI 126 +FR ++ GV+ +D I ++ LDM+ ++LR + E+ VP +V+ Sbjct: 60 AYFRELLSGVVLSHAELDSKIRPYVSR--PMQDLDMMELALLRLAMYEMTRREDVPYKVV 117 Query: 127 ISEYVCIAHDFFYGDEPKFINAVLDKVS 154 I+E + +A F D KF+N VLDK + Sbjct: 118 INEAIELAKVFAAEDSHKFVNGVLDKAA 145 >gi|22537833|ref|NP_688684.1| transcription antitermination protein NusB [Streptococcus agalactiae 2603V/R] gi|25011777|ref|NP_736172.1| transcription antitermination protein NusB [Streptococcus agalactiae NEM316] gi|76787394|ref|YP_330307.1| transcription antitermination protein NusB [Streptococcus agalactiae A909] gi|76798712|ref|ZP_00780933.1| transcription antitermination factor NusB [Streptococcus agalactiae 18RS21] gi|77406598|ref|ZP_00783645.1| transcription antitermination factor NusB [Streptococcus agalactiae H36B] gi|77409287|ref|ZP_00785993.1| transcription antitermination factor NusB [Streptococcus agalactiae COH1] gi|77412442|ref|ZP_00788747.1| transcription antitermination factor NusB [Streptococcus agalactiae CJB111] gi|77413939|ref|ZP_00790114.1| transcription antitermination factor NusB [Streptococcus agalactiae 515] gi|54037925|sp|P65581|NUSB_STRA5 RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|54041675|sp|P65580|NUSB_STRA3 RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|119390832|sp|Q3JZJ6|NUSB_STRA1 RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|22534728|gb|AAN00557.1|AE014269_1 N utilization substance protein B [Streptococcus agalactiae 2603V/R] gi|24413317|emb|CAD47396.1| Unknown [Streptococcus agalactiae NEM316] gi|76562451|gb|ABA45035.1| transcription antitermination factor NusB [Streptococcus agalactiae A909] gi|76585937|gb|EAO62474.1| transcription antitermination factor NusB [Streptococcus agalactiae 18RS21] gi|77160024|gb|EAO71160.1| transcription antitermination factor NusB [Streptococcus agalactiae 515] gi|77161506|gb|EAO72512.1| transcription antitermination factor NusB [Streptococcus agalactiae CJB111] gi|77172119|gb|EAO75282.1| transcription antitermination factor NusB [Streptococcus agalactiae COH1] gi|77174791|gb|EAO77613.1| transcription antitermination factor NusB [Streptococcus agalactiae H36B] gi|319745636|gb|EFV97936.1| transcription antitermination factor NusB [Streptococcus agalactiae ATCC 13813] Length = 144 Score = 54.7 bits (130), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 31/83 (37%), Positives = 47/83 (56%), Gaps = 4/83 (4%) Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131 +++GV+D K +D LISS L WS RL ++ S+LR G+ E+ P V ++E + Sbjct: 58 LVNGVVDHKDELDTLISSHLKSGWSLERLTLVDKSLLRLGLYEIKYFDETPDRVALNEII 117 Query: 132 CIAHDFFYGDE--PKFINAVLDK 152 IA Y DE KF+N +L + Sbjct: 118 EIAKK--YSDETSAKFVNGLLSQ 138 >gi|257095841|ref|YP_003169482.1| NusB antitermination factor [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] gi|257048365|gb|ACV37553.1| NusB antitermination factor [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] Length = 164 Score = 54.7 bits (130), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 42/144 (29%), Positives = 65/144 (45%), Gaps = 14/144 (9%) Query: 13 SHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVI 72 S RR AR A+QALYQ + G I + L + D E+F + Sbjct: 18 SPRR-RAREFALQALYQWQLSGNDEAAI-----------EAHLGDSEGFDKADREFFAGL 65 Query: 73 IHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVC 132 + GV+ +++ + + + L F L + +L AG EL P VII+E V Sbjct: 66 LRGVLAQRRTLQEQLQAFLDR--PFGELSPVEACVLLAGAFELNNHPQTPYGVIINESVE 123 Query: 133 IAHDFFYGDEPKFINAVLDKVSRK 156 +A F D K++N VLDK++ + Sbjct: 124 LAKGFGGTDGHKYVNGVLDKLAAR 147 >gi|27904889|ref|NP_778015.1| transcription antitermination protein NusB [Buchnera aphidicola str. Bp (Baizongia pistaciae)] gi|29427633|sp|P59452|NUSB_BUCBP RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|27904287|gb|AAO27120.1| N utilization substance protein B [Buchnera aphidicola str. Bp (Baizongia pistaciae)] Length = 144 Score = 54.7 bits (130), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 42/141 (29%), Positives = 67/141 (47%), Gaps = 13/141 (9%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 R AR AVQALY I ++I+ ++ + + +D +F +I G Sbjct: 8 RRKAREYAVQALYSWQISKNDIYDVINHFKKNKTINE-----------IDQIYFYELIIG 56 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135 + +++D L+ L+ + L I +ILR EL + + +P +V I+E + +A Sbjct: 57 ITKNLKYLDELMRPYLSR--TIQELGQIEKAILRISFFELDKRYDIPFKVTINESIELAK 114 Query: 136 DFFYGDEPKFINAVLDKVSRK 156 F D KFIN VLDK S K Sbjct: 115 LFGAKDSHKFINGVLDKASLK 135 >gi|118579723|ref|YP_900973.1| NusB antitermination factor [Pelobacter propionicus DSM 2379] gi|166215707|sp|A1ANJ5|NUSB_PELPD RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|118502433|gb|ABK98915.1| NusB antitermination factor [Pelobacter propionicus DSM 2379] Length = 143 Score = 54.7 bits (130), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 26/83 (31%), Positives = 46/83 (55%), Gaps = 1/83 (1%) Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131 ++ GV++ + ID I ++ WS SR+ + +I+R EL+ +P +V I+E + Sbjct: 50 LVQGVLEHRPAIDAAIK-ARSKNWSLSRMPKVDLNIMRLATYELMFRGDIPKKVSINEAI 108 Query: 132 CIAHDFFYGDEPKFINAVLDKVS 154 IA F D P F+N +LD++ Sbjct: 109 EIARRFGDKDSPAFVNGILDEIP 131 >gi|326790845|ref|YP_004308666.1| NusB antitermination factor [Clostridium lentocellum DSM 5427] gi|326541609|gb|ADZ83468.1| NusB antitermination factor [Clostridium lentocellum DSM 5427] Length = 139 Score = 54.7 bits (130), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 32/84 (38%), Positives = 47/84 (55%), Gaps = 2/84 (2%) Query: 75 GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134 GV + + ID LI+ + WS +R+ + SILR + EL + VPV+V ++E V IA Sbjct: 57 GVYEHVKEIDALIAGA-AKNWSMARIAKVDLSILRLAIFEL-QYTDVPVKVAVNEAVEIA 114 Query: 135 HDFFYGDEPKFINAVLDKVSRKEE 158 + PKFIN VL V++ E Sbjct: 115 KIYSTDKSPKFINGVLGSVTQANE 138 >gi|194364362|ref|YP_002026972.1| transcription antitermination protein NusB [Stenotrophomonas maltophilia R551-3] gi|238693436|sp|B4SJC1|NUSB_STRM5 RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|194347166|gb|ACF50289.1| NusB antitermination factor [Stenotrophomonas maltophilia R551-3] Length = 159 Score = 54.7 bits (130), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 39/139 (28%), Positives = 64/139 (46%), Gaps = 13/139 (9%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 R AR AVQA+Y I G + +I++ F + ++ DL +F ++HG Sbjct: 24 RSRARRRAVQAIYAWQISGGNAQSLIAQ-----FAHEQAREI------ADLAYFEALMHG 72 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135 V+D ++ ID + L +D I ++LR EL VP V+I+E + A Sbjct: 73 VLDNRRDIDEALGPYLDR--GIEEVDAIERAVLRLAGYELRYRLDVPYRVVINEAIESAK 130 Query: 136 DFFYGDEPKFINAVLDKVS 154 F ++N VLD+ + Sbjct: 131 RFGSEHGHTYVNGVLDRAA 149 >gi|270308448|ref|YP_003330506.1| transcription antitermination factor NusB [Dehalococcoides sp. VS] gi|270154340|gb|ACZ62178.1| transcription antitermination factor NusB [Dehalococcoides sp. VS] Length = 143 Score = 54.7 bits (130), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 42/144 (29%), Positives = 69/144 (47%), Gaps = 12/144 (8%) Query: 12 LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71 ++ R AR +QALY+ D+ G + +++ T TE + E + FR Sbjct: 1 MTTSRRKAREIVLQALYEQDLAGHNAEDVLRRLLTE--TPQTEENTEFI--------FR- 49 Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131 + + V+ K+ +D I W +L I ++LR + E+I + VPV+V I+E V Sbjct: 50 LTNAVVKHKELLDENIRQ-FASAWPVEQLSYIDRNVLRLAIFEIIHENDVPVKVAINEAV 108 Query: 132 CIAHDFFYGDEPKFINAVLDKVSR 155 +A F +FIN VL VS+ Sbjct: 109 ELAKSFGGNSSARFINGVLSSVSK 132 >gi|186475383|ref|YP_001856853.1| transcription antitermination protein NusB [Burkholderia phymatum STM815] gi|238691269|sp|B2JED0|NUSB_BURP8 RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|184191842|gb|ACC69807.1| NusB antitermination factor [Burkholderia phymatum STM815] Length = 145 Score = 54.7 bits (130), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 43/147 (29%), Positives = 65/147 (44%), Gaps = 15/147 (10%) Query: 10 LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF 69 +K + RR +R A Q LYQ + G EI D +L Y D E Sbjct: 1 MKSARRR--SRELATQGLYQWLLSGSPAGEI-----------DAQLRGAQGYDKADHEHL 47 Query: 70 RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISE 129 I+HGV+ + + ++ CL +L + ++L EL +P V+I+E Sbjct: 48 DAILHGVIRDSEALSADLAPCLDR--PIDQLSPVERAVLLVAAYELKNHIDIPYRVVINE 105 Query: 130 YVCIAHDFFYGDEPKFINAVLDKVSRK 156 V +A F D K++N VLDK+S K Sbjct: 106 AVELAKTFGGADGYKYVNGVLDKLSAK 132 >gi|294083737|ref|YP_003550494.1| NusB antitermination factor [Candidatus Puniceispirillum marinum IMCC1322] gi|292663309|gb|ADE38410.1| NusB antitermination factor [Candidatus Puniceispirillum marinum IMCC1322] Length = 160 Score = 54.7 bits (130), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 42/134 (31%), Positives = 62/134 (46%), Gaps = 9/134 (6%) Query: 24 VQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDL--EWFRVIIHGVMDRKQ 81 +Q LYQ I ++ + +Y T+ DV + DL E + GV Sbjct: 24 IQILYQSQITDRASVDFAPDYLTH-----YAPDVSKSFRVKDLDHEHLNALYTGVEKEMV 78 Query: 82 HIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGD 141 +D I+ L WS RL +I ++LR G EL +P ++SEY I+ G Sbjct: 79 LLDEDIADSLASGWSIKRLPLIELTLLRCGAYELRFMPHIPARAVVSEYAAISDAC--GC 136 Query: 142 EPKFINAVLDKVSR 155 E F+NAVLD++SR Sbjct: 137 EVAFVNAVLDRLSR 150 >gi|182413526|ref|YP_001818592.1| NusB antitermination factor [Opitutus terrae PB90-1] gi|177840740|gb|ACB74992.1| NusB antitermination factor [Opitutus terrae PB90-1] Length = 147 Score = 54.7 bits (130), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 29/92 (31%), Positives = 49/92 (53%), Gaps = 3/92 (3%) Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131 +IHGV++ ID I L W F R+ I +ILR + E++ +P V I+E + Sbjct: 55 LIHGVIEHSDDIDARIKG-LAHNWEFDRIAKIDLTILRLAIFEILHRKDIPPVVSINEAI 113 Query: 132 CIAHDFFYGDEPKFINAVLDKVSRKEEIKRSG 163 ++ F D +FIN +LD++ K+++ R Sbjct: 114 DLSKQFSNADAKRFINGILDRL--KDQVGRDA 143 >gi|146310545|ref|YP_001175619.1| transcription antitermination protein NusB [Enterobacter sp. 638] gi|166918808|sp|A4W788|NUSB_ENT38 RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|145317421|gb|ABP59568.1| NusB antitermination factor [Enterobacter sp. 638] Length = 139 Score = 54.7 bits (130), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 41/132 (31%), Positives = 65/132 (49%), Gaps = 13/132 (9%) Query: 23 AVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQH 82 AVQALY + ++ Y+F A E DV+ V D+ +FR ++ GV + Sbjct: 13 AVQALYSWQLSQNDIADV-----EYQFLA--EQDVKDV----DVLYFRELLSGVATNSAY 61 Query: 83 IDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDE 142 +D L+ L+ L + ++LR + EL + VP +V I+E + +A F D Sbjct: 62 LDGLMKPYLSR--LLEELGQVEKAVLRIALFELAKRDDVPYKVAINEAIELAKTFGAEDS 119 Query: 143 PKFINAVLDKVS 154 KF+N VLDK + Sbjct: 120 HKFVNGVLDKAA 131 >gi|329298306|ref|ZP_08255642.1| transcription antitermination protein NusB [Plautia stali symbiont] Length = 139 Score = 54.7 bits (130), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 42/134 (31%), Positives = 66/134 (49%), Gaps = 13/134 (9%) Query: 23 AVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQH 82 AVQALY + ++ Y+F A E DV+ V D+ +FR ++ GV Sbjct: 13 AVQALYSWQLSNNDIADV-----EYQFLA--EQDVKDV----DISYFRELLAGVATNSAF 61 Query: 83 IDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDE 142 +D L+ L+ + L + +ILR + EL + VP +V I+E + +A F D Sbjct: 62 LDGLMKPYLSRQ--LEELGQLEKAILRISLYELSKRDDVPYKVAINEGIELAKVFGAEDS 119 Query: 143 PKFINAVLDKVSRK 156 KF+N VLDK + + Sbjct: 120 HKFVNGVLDKAAPQ 133 >gi|319794181|ref|YP_004155821.1| nusb antitermination factor [Variovorax paradoxus EPS] gi|315596644|gb|ADU37710.1| NusB antitermination factor [Variovorax paradoxus EPS] Length = 178 Score = 54.7 bits (130), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 40/139 (28%), Positives = 67/139 (48%), Gaps = 13/139 (9%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 R AR A+QALYQ ++G + I F D + + D + ++HG Sbjct: 34 RSRAREFALQALYQ-HLVGRNDPTDIDH-----FTRDL-----AGFHKADAAHYDALLHG 82 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135 +D + +D LI L K F + I +++ GV E C VP V+++E + +A Sbjct: 83 SIDNAEQLDALIRPLLDRK--FEEISPIEHAVMWIGVYEFQNCPDVPWRVVLNECIELAK 140 Query: 136 DFFYGDEPKFINAVLDKVS 154 +F D K++NAVL+ ++ Sbjct: 141 EFGGTDGHKYVNAVLNGLA 159 >gi|297616617|ref|YP_003701776.1| NusB antitermination factor [Syntrophothermus lipocalidus DSM 12680] gi|297144454|gb|ADI01211.1| NusB antitermination factor [Syntrophothermus lipocalidus DSM 12680] Length = 138 Score = 54.7 bits (130), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 43/140 (30%), Positives = 69/140 (49%), Gaps = 17/140 (12%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 R +AR A + L+Q+D+ G S + + L E+ L + R ++ Sbjct: 3 RSLARETAFKVLFQVDLAGASPRDALQ-----------HLTAETPLADRYLAFARELVDK 51 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135 ++ + ID IS E WS SR+ + +I+R V E++ PV V+I+E V +A Sbjct: 52 TLEHVKTIDSYISKYSPE-WSISRMATVDRNIMRMAVCEMLYTEIDPV-VVINEAVELAK 109 Query: 136 DFFYGDE--PKFINAVLDKV 153 YGDE FINA+LD++ Sbjct: 110 K--YGDENSSSFINAILDRI 127 >gi|217964495|ref|YP_002350173.1| transcription antitermination factor NusB [Listeria monocytogenes HCC23] gi|254829884|ref|ZP_05234539.1| transcription antitermination protein NusB [Listeria monocytogenes 10403S] gi|254772645|sp|B8DFW9|NUSB_LISMH RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|217333765|gb|ACK39559.1| transcription antitermination factor NusB [Listeria monocytogenes HCC23] gi|307570941|emb|CAR84120.1| transcription antitermination factor [Listeria monocytogenes L99] Length = 128 Score = 54.7 bits (130), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 44/142 (30%), Positives = 66/142 (46%), Gaps = 21/142 (14%) Query: 15 RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74 +R AR A+QAL+QI++ S + I + + E D ++ ++ Sbjct: 2 KRREAREKALQALFQIELNEMSLDQAI------KNIMEDEQD----------DYMEKLVE 45 Query: 75 GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134 GVM K ID +I L + W RL + S+LR V E+ VP V ++E + IA Sbjct: 46 GVMANKAEIDAIIEPNL-DNWRIDRLSKVDLSLLRLSVYEIKYLDDVPNRVSLNESIEIA 104 Query: 135 HDFFYGDEP--KFINAVLDKVS 154 Y DE KFIN VL ++ Sbjct: 105 K--IYSDEKSSKFINGVLANIA 124 >gi|146321671|ref|YP_001201382.1| transcription antitermination protein NusB [Streptococcus suis 98HAH33] gi|145692477|gb|ABP92982.1| Transcription termination factor [Streptococcus suis 98HAH33] gi|292559096|gb|ADE32097.1| Antitermination protein NusB [Streptococcus suis GZ1] Length = 140 Score = 54.7 bits (130), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 26/86 (30%), Positives = 48/86 (55%) Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131 +++GV D + +D +SS L W+ RL +I +I+R G+ E++ P V ++E + Sbjct: 54 LVNGVADYRDDLDKELSSRLKAGWTLDRLTLIDKNIMRLGLFEILHFEETPDRVAVNEAI 113 Query: 132 CIAHDFFYGDEPKFINAVLDKVSRKE 157 +A +F KF+N VL + ++E Sbjct: 114 ELAKEFSDESSAKFVNGVLSQFIKEE 139 >gi|224534942|ref|ZP_03675511.1| transcription antitermination factor NusB [Borrelia spielmanii A14S] gi|224513882|gb|EEF84207.1| transcription antitermination factor NusB [Borrelia spielmanii A14S] Length = 142 Score = 54.7 bits (130), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 37/140 (26%), Positives = 67/140 (47%), Gaps = 9/140 (6%) Query: 20 RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79 R+ A Q +Y IDI + +I + D D+E+ + ++ +++G + Sbjct: 5 RVLAFQKIYSIDINQSAMDDIFDIFN----IEDKGFDIENESIK---SFYSSLVNGTFNN 57 Query: 80 KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLEL-IECHSVPVEVIISEYVCIAHDFF 138 +HID LI + ++ WS R+D + +ILR GV L + +I + + IA + Sbjct: 58 LEHIDSLIRN-ISWNWSLDRMDKVDLAILRMGVYSLKFQNFENSKRAVIDDAILIAKKYG 116 Query: 139 YGDEPKFINAVLDKVSRKEE 158 + KFIN +LD + + E Sbjct: 117 SKNSYKFINGILDALLKNME 136 >gi|217077046|ref|YP_002334762.1| transcription antitermination protein NusB [Thermosipho africanus TCF52B] gi|226738907|sp|B7IH57|NUSB_THEAB RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|217036899|gb|ACJ75421.1| transcription antitermination factor NusB [Thermosipho africanus TCF52B] Length = 142 Score = 54.7 bits (130), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 28/88 (31%), Positives = 48/88 (54%), Gaps = 1/88 (1%) Query: 73 IHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVC 132 I G+ + +D +IS L + W+ RL + +ILR G EL+ VP+EV + E + Sbjct: 51 IEGIKKTIESLDEIISKYL-QNWTLDRLSVTDRNILRLGTYELLYVDDVPIEVTLDEMIE 109 Query: 133 IAHDFFYGDEPKFINAVLDKVSRKEEIK 160 + + + KF+N VLD++++ E K Sbjct: 110 LGKTYGTENSGKFVNGVLDRIAKGEAPK 137 >gi|223933712|ref|ZP_03625687.1| NusB antitermination factor [Streptococcus suis 89/1591] gi|253752490|ref|YP_003025631.1| N utilization substance protein B homolog (NusB protein) [Streptococcus suis SC84] gi|253754316|ref|YP_003027457.1| N utilization substance protein B homolog (NusB protein) [Streptococcus suis P1/7] gi|253756250|ref|YP_003029390.1| N utilization substance protein B homolog (NusB protein) [Streptococcus suis BM407] gi|302024430|ref|ZP_07249641.1| transcription antitermination protein NusB [Streptococcus suis 05HAS68] gi|330833433|ref|YP_004402258.1| transcription antitermination protein NusB [Streptococcus suis ST3] gi|223897628|gb|EEF64014.1| NusB antitermination factor [Streptococcus suis 89/1591] gi|251816779|emb|CAZ52422.1| N utilization substance protein B homolog (NusB protein) [Streptococcus suis SC84] gi|251818714|emb|CAZ56550.1| N utilization substance protein B homolog (NusB protein) [Streptococcus suis BM407] gi|251820562|emb|CAR47318.1| N utilization substance protein B homolog (NusB protein) [Streptococcus suis P1/7] gi|319758898|gb|ADV70840.1| transcription antitermination protein NusB [Streptococcus suis JS14] gi|329307656|gb|AEB82072.1| transcription antitermination protein NusB [Streptococcus suis ST3] Length = 139 Score = 54.7 bits (130), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 26/86 (30%), Positives = 48/86 (55%) Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131 +++GV D + +D +SS L W+ RL +I +I+R G+ E++ P V ++E + Sbjct: 53 LVNGVADYRDDLDKELSSRLKAGWTLDRLTLIDKNIMRLGLFEILHFEETPDRVAVNEAI 112 Query: 132 CIAHDFFYGDEPKFINAVLDKVSRKE 157 +A +F KF+N VL + ++E Sbjct: 113 ELAKEFSDESSAKFVNGVLSQFIKEE 138 >gi|332637334|ref|ZP_08416197.1| transcription antitermination protein NusB [Weissella cibaria KACC 11862] Length = 140 Score = 54.3 bits (129), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 24/82 (29%), Positives = 47/82 (57%), Gaps = 1/82 (1%) Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131 +++G++D + DL IS L + W+ RL++ ++R + E ++ P ++ ++E + Sbjct: 55 MVNGIVDHQDEFDLTISEYLADGWTIDRLNLADVVLMRVAMYE-VKYAETPAKIAVNEAL 113 Query: 132 CIAHDFFYGDEPKFINAVLDKV 153 +AHDF KFIN +L+K Sbjct: 114 QLAHDFTDDASRKFINGILNKA 135 >gi|254498159|ref|ZP_05110911.1| transcription termination factor NusB [Legionella drancourtii LLAP12] gi|254352625|gb|EET11408.1| transcription termination factor NusB [Legionella drancourtii LLAP12] Length = 147 Score = 54.3 bits (129), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 35/138 (25%), Positives = 70/138 (50%), Gaps = 13/138 (9%) Query: 19 ARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMD 78 AR A+QALYQ + G +EI +++ R + VD+++F +++G+ + Sbjct: 12 ARKLALQALYQWFMSGSEVSEIEAQF---RLINNMS--------KVDVDYFCRLLYGIPE 60 Query: 79 RKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFF 138 ++ S L + L+ I ++LR G EL C VP +V++ E + + +F Sbjct: 61 HINELENSFSPFLDRE--VHELNPIELTVLRLGSFELFHCPEVPYKVVLDEAISLTKEFG 118 Query: 139 YGDEPKFINAVLDKVSRK 156 D +++N VL+ ++++ Sbjct: 119 SQDGYRYVNGVLNNLAQQ 136 >gi|124005043|ref|ZP_01689885.1| NusB antitermination factor [Microscilla marina ATCC 23134] gi|123989295|gb|EAY28856.1| NusB antitermination factor [Microscilla marina ATCC 23134] Length = 462 Score = 54.3 bits (129), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 43/160 (26%), Positives = 81/160 (50%), Gaps = 8/160 (5%) Query: 9 DLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETY-RFCADTELDVESVYLHVDLE 67 DL S R + + AV+ + I +G + E ET + EL S D+ Sbjct: 299 DLSWSENRKVVQSMAVKTIKAI--MGDTEEEDGDAEETEITINKNFELSPLSKNWDEDVV 356 Query: 68 WFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVII 127 +++ + + ++ Q + +I+ T+ W RL +I IL+ + E+I +S+PV+V I Sbjct: 357 FYKNLYNFNVEGNQRYEDIIAKK-TKNWDIERLALIDKVILKMAICEMINFYSIPVKVTI 415 Query: 128 SEYVCIAHDFFYGDEPKFINAVLDKVSR----KEEIKRSG 163 +EY+ +A + KF+N +LD +++ + +IK+SG Sbjct: 416 NEYIELAKTYSTPKSKKFVNGLLDSIAQDLIEQGDIKKSG 455 >gi|290961848|ref|YP_003493030.1| NusB family protein [Streptomyces scabiei 87.22] gi|260651374|emb|CBG74496.1| putative NusB-family protein [Streptomyces scabiei 87.22] Length = 144 Score = 54.3 bits (129), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 34/138 (24%), Positives = 64/138 (46%), Gaps = 9/138 (6%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 R AR A Q L++ D G +++++ + + V + ++ G Sbjct: 4 RNTARKRAFQILFEGDQRGADVLTVLADWIRHAHNDTRQPPVSEYTMQ--------LVEG 55 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135 + + ID LI+ + W+ R+ ++ +ILR G ELI + P V++ E V +A Sbjct: 56 YSEHARRIDELIAQY-SVGWTLDRMPVVDRNILRLGAYELIWVDATPDAVVLDEMVQLAK 114 Query: 136 DFFYGDEPKFINAVLDKV 153 +F D P F+N +L ++ Sbjct: 115 EFSTDDSPSFVNGLLGRL 132 >gi|189424280|ref|YP_001951457.1| NusB antitermination factor [Geobacter lovleyi SZ] gi|238692133|sp|B3E757|NUSB_GEOLS RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|189420539|gb|ACD94937.1| NusB antitermination factor [Geobacter lovleyi SZ] Length = 142 Score = 54.3 bits (129), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 35/135 (25%), Positives = 66/135 (48%), Gaps = 12/135 (8%) Query: 19 ARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMD 78 AR A+Q LY D + S + + +R +T E+ ++ GVM+ Sbjct: 7 ARELALQMLYAQDTLQGSLRDTLR---GFREGVETG--------ERTREFAEALVQGVME 55 Query: 79 RKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFF 138 ++ ID I + ++ W+ SR+ + +I+R EL+ +P +V I+E + IA + Sbjct: 56 HREAIDQAIVA-RSKNWALSRMPRVDLNIMRMAAYELMFKRDIPKKVSINEAIEIAKKYG 114 Query: 139 YGDEPKFINAVLDKV 153 + P F+N +LD++ Sbjct: 115 DKESPAFVNGILDEL 129 >gi|111114929|ref|YP_709547.1| transcription antitermination protein NusB [Borrelia afzelii PKo] gi|119372279|sp|Q0SP57|NUSB_BORAP RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|110890203|gb|ABH01371.1| N-utilization substance protein B [Borrelia afzelii PKo] Length = 137 Score = 54.3 bits (129), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 38/140 (27%), Positives = 67/140 (47%), Gaps = 9/140 (6%) Query: 20 RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79 R+ A Q +Y IDI + +I + D LD+E+ + ++ +++G + Sbjct: 5 RVLAFQKIYSIDINQSAMDDIFDIFN----IEDKGLDIENESIK---SFYSSLVNGTFNN 57 Query: 80 KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLEL-IECHSVPVEVIISEYVCIAHDFF 138 +HID LI ++ WS R+D + +ILR GV L + +I + + IA + Sbjct: 58 LEHIDSLIRD-ISWNWSLDRMDKVDLAILRMGVYSLKFQNFENSKRAVIDDAILIAKKYG 116 Query: 139 YGDEPKFINAVLDKVSRKEE 158 + KFIN +LD + + E Sbjct: 117 SKNSCKFINGILDALLKNME 136 >gi|283784235|ref|YP_003364100.1| N utilization substance protein B [Citrobacter rodentium ICC168] gi|282947689|emb|CBG87244.1| N utilization substance protein B [Citrobacter rodentium ICC168] Length = 139 Score = 54.3 bits (129), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 41/132 (31%), Positives = 65/132 (49%), Gaps = 13/132 (9%) Query: 23 AVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQH 82 AVQALY + ++ Y+F A E DV+ V D+ +FR ++ GV + Sbjct: 13 AVQALYSWQLSQNDIADV-----EYQFLA--EQDVKDV----DVMYFRELLSGVATNSAY 61 Query: 83 IDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDE 142 +D L+ L+ L + ++LR + EL + VP +V I+E + +A F D Sbjct: 62 LDGLMKPYLSR--LLEELGQVEKAVLRIALFELSKRSDVPYKVAINEAIELAKTFGAEDS 119 Query: 143 PKFINAVLDKVS 154 KF+N VLDK + Sbjct: 120 HKFVNGVLDKAA 131 >gi|254434713|ref|ZP_05048221.1| transcription antitermination factor NusB [Nitrosococcus oceani AFC27] gi|207091046|gb|EDZ68317.1| transcription antitermination factor NusB [Nitrosococcus oceani AFC27] Length = 136 Score = 54.3 bits (129), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 35/133 (26%), Positives = 66/133 (49%), Gaps = 14/133 (10%) Query: 24 VQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHI 83 +Q LYQ ++G +I D E V+ + +D +F+ ++ GV R+ + Sbjct: 1 MQGLYQWQLMGQDVDKI-----------DIEFIVQDIR-GIDHAYFQELLRGVPQRQGEL 48 Query: 84 DLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEP 143 D + L + +D + C+ILR G EL+ +P V+++E + +A F Sbjct: 49 DECLGPFLDR--PINEVDPVECAILRIGAFELLCRPEIPYRVVLNEAIELAKRFGAEHGH 106 Query: 144 KFINAVLDKVSRK 156 +++N +LDKV++K Sbjct: 107 RYVNGILDKVAQK 119 >gi|156935035|ref|YP_001438951.1| transcription antitermination protein NusB [Cronobacter sakazakii ATCC BAA-894] gi|166215688|sp|A7MFG4|NUSB_ENTS8 RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|156533289|gb|ABU78115.1| hypothetical protein ESA_02886 [Cronobacter sakazakii ATCC BAA-894] Length = 139 Score = 54.3 bits (129), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 41/132 (31%), Positives = 66/132 (50%), Gaps = 13/132 (9%) Query: 23 AVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQH 82 AVQALY + ++ Y+F A E DV+ V D+ +FR ++ GV + Sbjct: 13 AVQALYSWQLSHNDIADV-----EYQFLA--EQDVKDV----DVMYFRELLSGVATNSGY 61 Query: 83 IDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDE 142 +D L+ L+ + L + ++LR + EL + VP +V I+E + +A F D Sbjct: 62 LDGLMKPYLSRQ--LEELGQVEKAVLRIALFELSKRDDVPYKVAINEAIELAKVFGAEDS 119 Query: 143 PKFINAVLDKVS 154 KF+N VLDK + Sbjct: 120 HKFVNGVLDKAA 131 >gi|238791410|ref|ZP_04635048.1| N utilization substance protein B [Yersinia intermedia ATCC 29909] gi|238729026|gb|EEQ20542.1| N utilization substance protein B [Yersinia intermedia ATCC 29909] Length = 138 Score = 54.3 bits (129), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 44/134 (32%), Positives = 65/134 (48%), Gaps = 17/134 (12%) Query: 23 AVQALYQIDIIGCSTTEIISEYETYRFCADTELDV--ESVYLHVDLEWFRVIIHGVMDRK 80 AVQALY + S +I AD EL E VD+ +FR ++ GV Sbjct: 13 AVQALYSWQL---SKNDI----------ADVELQFLSEQDVKDVDISYFRELLSGVAVNA 59 Query: 81 QHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYG 140 +D L++ L+ + L + +ILR + EL + VP +V I+E + +A F Sbjct: 60 TSLDALMAPFLSRQ--LEELGQVERAILRIALFELSKRDDVPYKVAINEAIELAKTFGAE 117 Query: 141 DEPKFINAVLDKVS 154 D KF+N VLDKV+ Sbjct: 118 DSHKFVNGVLDKVA 131 >gi|260596785|ref|YP_003209356.1| transcription antitermination protein NusB [Cronobacter turicensis z3032] gi|260215962|emb|CBA28587.1| N utilization substance protein B homolog [Cronobacter turicensis z3032] Length = 139 Score = 54.3 bits (129), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 41/132 (31%), Positives = 66/132 (50%), Gaps = 13/132 (9%) Query: 23 AVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQH 82 AVQALY + ++ Y+F A E DV+ V D+ +FR ++ GV + Sbjct: 13 AVQALYSWQLSHNDIADV-----EYQFLA--EQDVKDV----DVMYFRELLSGVATNSGY 61 Query: 83 IDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDE 142 +D L+ L+ + L + ++LR + EL + VP +V I+E + +A F D Sbjct: 62 LDGLMKPYLSRQ--LEELGQVEKAVLRIALFELSKRDDVPYKVAINEAIELAKVFGAEDS 119 Query: 143 PKFINAVLDKVS 154 KF+N VLDK + Sbjct: 120 HKFVNGVLDKAA 131 >gi|51598370|ref|YP_072558.1| transcription antitermination protein NusB [Borrelia garinii PBi] gi|81610223|sp|Q662Q5|NUSB_BORGA RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|51572941|gb|AAU06966.1| N-utilization substance protein B [Borrelia garinii PBi] Length = 142 Score = 54.3 bits (129), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 38/140 (27%), Positives = 67/140 (47%), Gaps = 9/140 (6%) Query: 20 RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79 R+ A Q +Y IDI + +I + D LD+E+ + ++ +++G + Sbjct: 5 RVLAFQKIYSIDINQSAMDDIFDIFS----IEDKGLDIENESIK---SFYSSLVNGTFNN 57 Query: 80 KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLEL-IECHSVPVEVIISEYVCIAHDFF 138 ++ID LI ++ WS R+D + +ILR GV L + +I E + IA + Sbjct: 58 LEYIDSLIKD-ISWNWSLDRMDKVDLAILRMGVYSLKFQNFENSKRALIDEAILIAKKYG 116 Query: 139 YGDEPKFINAVLDKVSRKEE 158 + KFIN +LD + + E Sbjct: 117 SKNSDKFINGILDALLKNME 136 >gi|220912760|ref|YP_002488069.1| NusB antitermination factor [Arthrobacter chlorophenolicus A6] gi|254772610|sp|B8H8V2|NUSB_ARTCA RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|219859638|gb|ACL39980.1| NusB antitermination factor [Arthrobacter chlorophenolicus A6] Length = 136 Score = 54.3 bits (129), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 28/84 (33%), Positives = 46/84 (54%), Gaps = 1/84 (1%) Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131 I+ GV+ R+Q ID + + ++ WS R+ + ILR G EL+ VP V +SE V Sbjct: 47 IVEGVVSRQQAIDEFLETY-SQGWSLERMPSVDRIILRIGTWELLYNDDVPDGVAVSEAV 105 Query: 132 CIAHDFFYGDEPKFINAVLDKVSR 155 +A + P+FIN +L ++ + Sbjct: 106 ALAKTLSTDESPQFINGLLGRLQQ 129 >gi|294102024|ref|YP_003553882.1| NusB antitermination factor [Aminobacterium colombiense DSM 12261] gi|293617004|gb|ADE57158.1| NusB antitermination factor [Aminobacterium colombiense DSM 12261] Length = 158 Score = 54.3 bits (129), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 45/145 (31%), Positives = 70/145 (48%), Gaps = 14/145 (9%) Query: 12 LSHRRGIARLAAVQALYQIDIIGCSTTEIISE-YETYRFCADTELDVESVYLHVDLEWFR 70 L +R +R A+Q LY +DI +E ++E + Y F D E DV S + Sbjct: 6 LPQKRRRSREIAIQILYALDI---RNSEKVNEMFSLYPF-GDEEPDVVS--------YAS 53 Query: 71 VIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEY 130 +++ GV + + ID LI + W R+ + + LR + E I +PV V ISE Sbjct: 54 LLVKGVWEARFEIDTLIRKHVV-GWRPERMVAVDRAALRLAIYEGIIKQMIPVPVAISEA 112 Query: 131 VCIAHDFFYGDEPKFINAVLDKVSR 155 V +A F + +F+N VL K+ R Sbjct: 113 VELAKTFGTDESGRFVNGVLGKIVR 137 >gi|297569245|ref|YP_003690589.1| NusB antitermination factor [Desulfurivibrio alkaliphilus AHT2] gi|296925160|gb|ADH85970.1| NusB antitermination factor [Desulfurivibrio alkaliphilus AHT2] Length = 138 Score = 54.3 bits (129), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 41/141 (29%), Positives = 66/141 (46%), Gaps = 14/141 (9%) Query: 23 AVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQH 82 A+QALYQ D+ S + + C + E+ ++ L + ++ GV+ Sbjct: 11 ALQALYQADMSNVSALDTLPV-----LCENFEVSRKA------LPYGEGLVGGVVANLAA 59 Query: 83 IDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDE 142 ID +I + + W SR+ I +I+R V E VP V I+E + +A F D Sbjct: 60 IDRIIEAG-SAHWRVSRMSCIDRNIIRIAVYEFNFAADVPAGVAINEAIELAKRFGSEDS 118 Query: 143 PKFINAVLDKVSRKEEIKRSG 163 P FIN VLD + ++ + R G Sbjct: 119 PAFINGVLDAI--RKTLSRQG 137 >gi|238752770|ref|ZP_04614239.1| N utilization substance protein B [Yersinia rohdei ATCC 43380] gi|238709028|gb|EEQ01277.1| N utilization substance protein B [Yersinia rohdei ATCC 43380] Length = 138 Score = 54.3 bits (129), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 42/134 (31%), Positives = 65/134 (48%), Gaps = 17/134 (12%) Query: 23 AVQALYQIDIIGCSTTEIISEYETYRFCADTELDV--ESVYLHVDLEWFRVIIHGVMDRK 80 AVQALY + S +I AD EL E VD+ +FR ++ GV Sbjct: 13 AVQALYSWQL---SKNDI----------ADVELQFLSEQDVKDVDISYFRELLSGVAVNA 59 Query: 81 QHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYG 140 +D L++ L+ + L + ++LR + EL + VP +V I+E + +A F Sbjct: 60 ASLDALMAPVLSRQ--LEELGQVERAVLRIALFELSKRDDVPYKVAINEAIELAKTFGAA 117 Query: 141 DEPKFINAVLDKVS 154 D KF+N VLDK++ Sbjct: 118 DSHKFVNGVLDKLA 131 >gi|88859180|ref|ZP_01133821.1| transcription termination factor [Pseudoalteromonas tunicata D2] gi|88819406|gb|EAR29220.1| transcription termination factor [Pseudoalteromonas tunicata D2] Length = 136 Score = 54.3 bits (129), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 41/147 (27%), Positives = 76/147 (51%), Gaps = 14/147 (9%) Query: 10 LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF 69 +K + RR AR+ A+QA+Y + G + +I + ++ +E+ +D+E+F Sbjct: 1 MKPAARRK-ARILALQAIYSWQVSGNAIADI-----------EQQMLLENDISKIDVEYF 48 Query: 70 RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISE 129 + + GV + + +D+++S L + +D + +ILR EL VP +V I+E Sbjct: 49 KDLACGVAVQHKVLDVILSPHLAR--PYEDIDFVEKAILRLSAYELKFREDVPYKVAINE 106 Query: 130 YVCIAHDFFYGDEPKFINAVLDKVSRK 156 + +A F D KF+N VLDK ++ Sbjct: 107 GIELAKMFGAEDSHKFVNGVLDKAVKE 133 >gi|281413741|ref|ZP_06245483.1| transcription antitermination factor NusB [Micrococcus luteus NCTC 2665] Length = 125 Score = 54.3 bits (129), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 31/98 (31%), Positives = 53/98 (54%), Gaps = 2/98 (2%) Query: 58 ESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIE 117 ES L V+ + + ++ GV+ ++ +D +SS + WS R+ + +ILR G EL+ Sbjct: 23 ESTDLQVN-AYTQRLVEGVIADQERLDEALSSY-SRGWSLDRMPAVDRAILRVGAWELLF 80 Query: 118 CHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSR 155 VP V ISE V +A D P+F+N +L ++ + Sbjct: 81 QDDVPDAVAISEAVALAAQLSTDDSPEFVNGLLGRLQQ 118 >gi|187925077|ref|YP_001896719.1| transcription antitermination protein NusB [Burkholderia phytofirmans PsJN] gi|238689481|sp|B2T6D1|NUSB_BURPP RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|187716271|gb|ACD17495.1| NusB antitermination factor [Burkholderia phytofirmans PsJN] Length = 144 Score = 54.3 bits (129), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 42/145 (28%), Positives = 64/145 (44%), Gaps = 15/145 (10%) Query: 10 LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF 69 +K + RR +R A Q LYQ + G EI D +L + D E Sbjct: 1 MKSARRR--SRELATQGLYQWLLSGSPGGEI-----------DAQLRGAQGFDKADHEHL 47 Query: 70 RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISE 129 I+HGV+ + + I+ CL +L + ++L EL +P V+I+E Sbjct: 48 DAILHGVIRDSEALSAAIAPCLDR--PIEQLSPVERAVLLVAAFELKNHVDIPYRVVINE 105 Query: 130 YVCIAHDFFYGDEPKFINAVLDKVS 154 V +A F D K++N VLDK+S Sbjct: 106 AVELAKTFGGADGYKYVNGVLDKLS 130 >gi|326329789|ref|ZP_08196109.1| transcription antitermination factor NusB [Nocardioidaceae bacterium Broad-1] gi|325952375|gb|EGD44395.1| transcription antitermination factor NusB [Nocardioidaceae bacterium Broad-1] Length = 137 Score = 54.3 bits (129), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 29/84 (34%), Positives = 46/84 (54%), Gaps = 2/84 (2%) Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131 I+ GV+ + ID LIS + W+ +R+ + ++LR GV EL++ V EV ISE Sbjct: 51 IVRGVVAEAERIDALIS-AFAKDWTLARMPAVDRNVLRIGVWELLDGD-VASEVAISEAT 108 Query: 132 CIAHDFFYGDEPKFINAVLDKVSR 155 + + D P F+N VL V++ Sbjct: 109 ALVTELSTDDSPSFVNGVLAAVAK 132 >gi|238795564|ref|ZP_04639079.1| N utilization substance protein B [Yersinia mollaretii ATCC 43969] gi|238720683|gb|EEQ12484.1| N utilization substance protein B [Yersinia mollaretii ATCC 43969] Length = 138 Score = 54.3 bits (129), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 38/122 (31%), Positives = 60/122 (49%), Gaps = 4/122 (3%) Query: 35 CSTTEIISEYETYRFCADTELDV--ESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLT 92 C+ I S + AD EL E VD+ +FR ++ GV +D L++ L+ Sbjct: 12 CAVQAIYSWQLSKNDIADVELQFLSEQDVKDVDIAYFRELLSGVAVNAASLDALMAPFLS 71 Query: 93 EKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDK 152 + L + ++LR + EL + VP +V I+E + +A F D KF+N VLDK Sbjct: 72 RQ--LEELGQVERAVLRIALFELSKREDVPYKVAINEAIELAKTFGAEDSHKFVNGVLDK 129 Query: 153 VS 154 V+ Sbjct: 130 VA 131 >gi|156973480|ref|YP_001444387.1| transcription antitermination protein NusB [Vibrio harveyi ATCC BAA-1116] gi|269962347|ref|ZP_06176697.1| N utilization substance protein B [Vibrio harveyi 1DA3] gi|166215728|sp|A7MWU1|NUSB_VIBHB RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|156525074|gb|ABU70160.1| hypothetical protein VIBHAR_01170 [Vibrio harveyi ATCC BAA-1116] gi|269832843|gb|EEZ86952.1| N utilization substance protein B [Vibrio harveyi 1DA3] Length = 155 Score = 54.3 bits (129), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 42/148 (28%), Positives = 71/148 (47%), Gaps = 6/148 (4%) Query: 10 LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYL---HVDL 66 +K + RR AR A+QA+Y I + I ++ + + EL L D+ Sbjct: 5 VKPAARRN-ARQFALQAIYSWQITKDNVATIEEQFLSGDKYDEEELHASEPALAAPETDV 63 Query: 67 EWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVI 126 +FR ++ GV+ +D I ++ LDM+ ++LR + E+ VP +V+ Sbjct: 64 AYFRELLSGVVLSHSELDSKIRPYVSR--PMQDLDMMELALLRLAMYEMTRREDVPYKVV 121 Query: 127 ISEYVCIAHDFFYGDEPKFINAVLDKVS 154 I+E + +A F D KF+N VLDK + Sbjct: 122 INEAIELAKVFAAEDSHKFVNGVLDKAA 149 >gi|29833402|ref|NP_828036.1| transcription antitermination protein NusB [Streptomyces avermitilis MA-4680] gi|39931877|sp|Q827R4|NUSB_STRAW RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|29610525|dbj|BAC74571.1| putative transcription termination protein [Streptomyces avermitilis MA-4680] Length = 144 Score = 54.3 bits (129), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 38/147 (25%), Positives = 65/147 (44%), Gaps = 12/147 (8%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 R AR A Q L++ D G +++++ + + V + ++ G Sbjct: 4 RNTARKRAFQILFEGDQRGVDVLTVLADWIRHSRTDTRQPPVSEYTMQ--------LVEG 55 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135 + ID LIS W+ R+ ++ +ILR G EL+ P V++ E V +A Sbjct: 56 YAKKVNRIDELISQYAV-GWTLDRMPVVDRNILRLGTYELLWVDETPDAVVLDEAVQLAK 114 Query: 136 DFFYGDEPKFINAVLDKVSRKEEIKRS 162 +F D P F+N +L R +E+K S Sbjct: 115 EFSTDDSPAFVNGLL---GRLKELKPS 138 >gi|220931474|ref|YP_002508382.1| NusB antitermination factor [Halothermothrix orenii H 168] gi|259514846|sp|B8D2G0|NUSB_HALOH RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|219992784|gb|ACL69387.1| NusB antitermination factor [Halothermothrix orenii H 168] Length = 134 Score = 54.3 bits (129), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 46/134 (34%), Positives = 66/134 (49%), Gaps = 13/134 (9%) Query: 20 RLAAVQALYQIDIIGCSTTEIISEYETYR-FCADTELDVESVYLHVDLEWFRVIIHGVMD 78 R+ A+Q LY +DI S I +T R F LD + Y F I+ GV++ Sbjct: 9 RVWALQILYSLDI--SSELNIQKARKTCREFKYKKVLDKKRYY-------FEDIVEGVIN 59 Query: 79 RKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFF 138 +Q +D +I+ + W R+ I +ILR + E+ +PV V I E V IA DF Sbjct: 60 SRQDLDSIINKYAID-WDVERMACIDRNILRIALYEI--ESGLPVGVAIDEAVEIAKDFG 116 Query: 139 YGDEPKFINAVLDK 152 + PKFIN +L K Sbjct: 117 DSNSPKFINGILAK 130 >gi|313837743|gb|EFS75457.1| transcription antitermination factor NusB [Propionibacterium acnes HL037PA2] gi|314927375|gb|EFS91206.1| transcription antitermination factor NusB [Propionibacterium acnes HL044PA1] gi|314972681|gb|EFT16778.1| transcription antitermination factor NusB [Propionibacterium acnes HL037PA3] gi|328907460|gb|EGG27226.1| transcription antitermination factor NusB [Propionibacterium sp. P08] Length = 256 Score = 53.9 bits (128), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 31/138 (22%), Positives = 65/138 (47%), Gaps = 14/138 (10%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 R AR A+ L++ D++G E+++ SV+++ + ++ G Sbjct: 32 RSKARKQALDILFEADLMGTDPLEVLAARP-------------SVFINPVRPFAADLVRG 78 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135 V + +D +++ CL+E W+ R+ + + R G E++ + P +ISE + ++ Sbjct: 79 VAATQAGLDSVLADCLSEGWTLDRMPRVDRILARLGTFEILHTDT-PNPAVISEAIELSE 137 Query: 136 DFFYGDEPKFINAVLDKV 153 +F D F+N +L V Sbjct: 138 EFSTDDSAPFLNGLLSAV 155 >gi|91784900|ref|YP_560106.1| transcription antitermination protein NusB [Burkholderia xenovorans LB400] gi|119372284|sp|Q13V35|NUSB_BURXL RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|91688854|gb|ABE32054.1| NusB antitermination factor [Burkholderia xenovorans LB400] Length = 144 Score = 53.9 bits (128), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 41/145 (28%), Positives = 64/145 (44%), Gaps = 15/145 (10%) Query: 10 LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF 69 +K + RR +R A Q LYQ + G EI D +L + D E Sbjct: 1 MKSARRR--SRELATQGLYQWLLSGSPGGEI-----------DAQLRGAQGFDKADHEHL 47 Query: 70 RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISE 129 ++HGV+ + + I+ CL +L + ++L EL +P V+I+E Sbjct: 48 DAVLHGVIRDSEALSAAIAPCLDR--PIEQLSPVERAVLLVAAFELKNHLDIPYRVVINE 105 Query: 130 YVCIAHDFFYGDEPKFINAVLDKVS 154 V +A F D K++N VLDK+S Sbjct: 106 AVELAKTFGGADGYKYVNGVLDKLS 130 >gi|28897457|ref|NP_797062.1| transcription antitermination protein NusB [Vibrio parahaemolyticus RIMD 2210633] gi|153840491|ref|ZP_01993158.1| transcription antitermination factor NusB [Vibrio parahaemolyticus AQ3810] gi|260364269|ref|ZP_05776968.1| transcription antitermination factor NusB [Vibrio parahaemolyticus K5030] gi|260876417|ref|ZP_05888772.1| transcription antitermination factor NusB [Vibrio parahaemolyticus AN-5034] gi|260898688|ref|ZP_05907184.1| transcription antitermination factor NusB [Vibrio parahaemolyticus Peru-466] gi|260899217|ref|ZP_05907612.1| transcription antitermination factor NusB [Vibrio parahaemolyticus AQ4037] gi|31076798|sp|Q87RU3|NUSB_VIBPA RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|28805669|dbj|BAC58946.1| N utilization substance protein B [Vibrio parahaemolyticus RIMD 2210633] gi|149745845|gb|EDM56975.1| transcription antitermination factor NusB [Vibrio parahaemolyticus AQ3810] gi|308086855|gb|EFO36550.1| transcription antitermination factor NusB [Vibrio parahaemolyticus Peru-466] gi|308092966|gb|EFO42661.1| transcription antitermination factor NusB [Vibrio parahaemolyticus AN-5034] gi|308106640|gb|EFO44180.1| transcription antitermination factor NusB [Vibrio parahaemolyticus AQ4037] gi|308113746|gb|EFO51286.1| transcription antitermination factor NusB [Vibrio parahaemolyticus K5030] Length = 155 Score = 53.9 bits (128), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 42/148 (28%), Positives = 71/148 (47%), Gaps = 6/148 (4%) Query: 10 LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYL---HVDL 66 +K + RR AR A+QA+Y I + I ++ + + EL L D+ Sbjct: 5 VKPAARRN-ARQFALQAIYSWQITKENVATIEEQFLSGDKYDEEELRASEPALAAPETDV 63 Query: 67 EWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVI 126 +FR ++ GV+ +D I ++ LDM+ ++LR + E+ VP +V+ Sbjct: 64 AYFRELLSGVVLSHAELDSKIRPYVSR--PMQDLDMMELALLRLAMYEMTRREDVPYKVV 121 Query: 127 ISEYVCIAHDFFYGDEPKFINAVLDKVS 154 I+E + +A F D KF+N VLDK + Sbjct: 122 INEAIELAKVFAAEDSHKFVNGVLDKAA 149 >gi|222111432|ref|YP_002553696.1| nusb antitermination factor [Acidovorax ebreus TPSY] gi|254772634|sp|B9MBL7|NUSB_DIAST RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|221730876|gb|ACM33696.1| NusB antitermination factor [Acidovorax ebreus TPSY] Length = 177 Score = 53.9 bits (128), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 42/141 (29%), Positives = 67/141 (47%), Gaps = 13/141 (9%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 R AR A+QALYQ + G T I F D S + D + ++HG Sbjct: 35 RSRAREFALQALYQHLVGGNDATAIDV------FTRDL-----SGFHKADAAHYDALLHG 83 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135 + Q++D LI+ L K S + I +++ GV E C VP V+I+E + +A Sbjct: 84 CITTAQYMDELIAPQLDRK--MSEISPIEHAVMWIGVYEFQHCQDVPWRVVINECIELAK 141 Query: 136 DFFYGDEPKFINAVLDKVSRK 156 +F D K++N VL+ ++ + Sbjct: 142 EFGGTDGHKYVNGVLNGLAPQ 162 >gi|121595089|ref|YP_986985.1| NusB antitermination factor [Acidovorax sp. JS42] gi|166215657|sp|A1W9I4|NUSB_ACISJ RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|120607169|gb|ABM42909.1| NusB antitermination factor [Acidovorax sp. JS42] Length = 177 Score = 53.9 bits (128), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 42/141 (29%), Positives = 67/141 (47%), Gaps = 13/141 (9%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 R AR A+QALYQ + G T I F D S + D + ++HG Sbjct: 35 RSRAREFALQALYQHLVGGNDATAIDV------FTRDL-----SGFHKADAAHYDALLHG 83 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135 + Q++D LI+ L K S + I +++ GV E C VP V+I+E + +A Sbjct: 84 CITTAQYMDELIAPQLDRK--MSEISPIEHAVMWIGVYEFQHCQDVPWRVVINECIELAK 141 Query: 136 DFFYGDEPKFINAVLDKVSRK 156 +F D K++N VL+ ++ + Sbjct: 142 EFGGTDGHKYVNGVLNGLAPQ 162 >gi|138895967|ref|YP_001126420.1| transcription antitermination protein NusB [Geobacillus thermodenitrificans NG80-2] gi|166215689|sp|A4IQS1|NUSB_GEOTN RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|134267480|gb|ABO67675.1| N utilization substance protein B [Geobacillus thermodenitrificans NG80-2] Length = 130 Score = 53.9 bits (128), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 43/139 (30%), Positives = 61/139 (43%), Gaps = 16/139 (11%) Query: 15 RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74 +R AR A+QAL+QID+ E I E+D + R ++ Sbjct: 2 KRHEAREKALQALFQIDVGHIPPDEAIG-----NVTGSGEVD----------PFLRQLVF 46 Query: 75 GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134 V++ + ID L+ S L EKW R+ + ILR E+ VPV V + E V +A Sbjct: 47 DVIEHRAEIDELLRSNL-EKWKLERVANVDRVILRMATYEMKYVDDVPVSVSLDEAVELA 105 Query: 135 HDFFYGDEPKFINAVLDKV 153 F F+N VL KV Sbjct: 106 KKFGDWKSGSFVNGVLSKV 124 >gi|16763798|ref|NP_459413.1| transcription antitermination protein NusB [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|56414427|ref|YP_151502.1| transcription antitermination protein NusB [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|62179029|ref|YP_215446.1| transcription antitermination protein NusB [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|157146968|ref|YP_001454287.1| transcription antitermination protein NusB [Citrobacter koseri ATCC BAA-895] gi|161504397|ref|YP_001571509.1| transcription antitermination protein NusB [Salmonella enterica subsp. arizonae serovar 62:z4,z23:-- str. RSK2980] gi|161615394|ref|YP_001589359.1| transcription antitermination protein NusB [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|167551771|ref|ZP_02345524.1| transcription termination/antitermination factor NusB [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|167992268|ref|ZP_02573366.1| transcription termination/antitermination factor NusB [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|168232391|ref|ZP_02657449.1| transcription termination/antitermination factor NusB [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|168237531|ref|ZP_02662589.1| transcription termination/antitermination factor NusB [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|168240241|ref|ZP_02665173.1| transcription termination/antitermination factor NusB [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|168261149|ref|ZP_02683122.1| transcription termination/antitermination factor NusB [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|168465508|ref|ZP_02699390.1| transcription termination/antitermination factor NusB [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|168818971|ref|ZP_02830971.1| transcription termination/antitermination factor NusB [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|194445003|ref|YP_002039660.1| transcription antitermination protein NusB [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194449230|ref|YP_002044453.1| transcription antitermination protein NusB [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|194470791|ref|ZP_03076775.1| transcription termination/antitermination factor NusB [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|194735835|ref|YP_002113451.1| transcription antitermination protein NusB [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|197249816|ref|YP_002145400.1| transcription antitermination protein NusB [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|197265909|ref|ZP_03165983.1| transcription termination/antitermination factor NusB [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|197363347|ref|YP_002142984.1| transcription antitermination protein NusB [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|198243030|ref|YP_002214372.1| transcription antitermination protein NusB [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|200390221|ref|ZP_03216832.1| transcription termination/antitermination factor NusB [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|204926733|ref|ZP_03217935.1| transcription termination/antitermination factor NusB [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|205351729|ref|YP_002225530.1| transcription antitermination protein NusB [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|207855899|ref|YP_002242550.1| transcription antitermination protein NusB [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|224582256|ref|YP_002636054.1| transcription antitermination protein NusB [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|237730392|ref|ZP_04560873.1| transcription antitermination protein NusB [Citrobacter sp. 30_2] gi|238911449|ref|ZP_04655286.1| transcription antitermination protein NusB [Salmonella enterica subsp. enterica serovar Tennessee str. CDC07-0191] gi|283834267|ref|ZP_06354008.1| transcription antitermination factor NusB [Citrobacter youngae ATCC 29220] gi|22095957|sp|Q8ZRD3|NUSB_SALTY RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|75484594|sp|Q57SE6|NUSB_SALCH RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|81599425|sp|Q5PFS9|NUSB_SALPA RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|166215680|sp|A8AK38|NUSB_CITK8 RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|189035901|sp|A9MM45|NUSB_SALAR RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|189035902|sp|A9MX13|NUSB_SALPB RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|238689944|sp|B5BDB4|NUSB_SALPK RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|238689999|sp|B5EXF9|NUSB_SALA4 RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|238690220|sp|B4T8Q9|NUSB_SALHS RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|238690323|sp|B5FKS3|NUSB_SALDC RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|238690385|sp|B5QTG6|NUSB_SALEP RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|238690477|sp|B5R6R9|NUSB_SALG2 RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|238690694|sp|B4TM98|NUSB_SALSV RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|238693540|sp|B4SWR0|NUSB_SALNS RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|254772653|sp|C0Q7U3|NUSB_SALPC RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|16418923|gb|AAL19372.1| transcription termination; L factor [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|56128684|gb|AAV78190.1| N utilization substance protein B [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|62126662|gb|AAX64365.1| transcription termination; L factor [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|157084173|gb|ABV13851.1| hypothetical protein CKO_02745 [Citrobacter koseri ATCC BAA-895] gi|160865744|gb|ABX22367.1| hypothetical protein SARI_02508 [Salmonella enterica subsp. arizonae serovar 62:z4,z23:--] gi|161364758|gb|ABX68526.1| hypothetical protein SPAB_03165 [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|194403666|gb|ACF63888.1| transcription termination/antitermination factor NusB [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194407534|gb|ACF67753.1| transcription termination/antitermination factor NusB [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|194457155|gb|EDX45994.1| transcription termination/antitermination factor NusB [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|194711337|gb|ACF90558.1| transcription termination/antitermination factor NusB [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|195631893|gb|EDX50413.1| transcription termination/antitermination factor NusB [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|197094824|emb|CAR60357.1| N utilization substance protein B [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|197213519|gb|ACH50916.1| transcription termination/antitermination factor NusB [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|197244164|gb|EDY26784.1| transcription termination/antitermination factor NusB [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|197289580|gb|EDY28943.1| transcription termination/antitermination factor NusB [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|197937546|gb|ACH74879.1| transcription termination/antitermination factor NusB [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|199602666|gb|EDZ01212.1| transcription termination/antitermination factor NusB [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|204323398|gb|EDZ08593.1| transcription termination/antitermination factor NusB [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|205271510|emb|CAR36328.1| N utilization substance protein B [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|205323516|gb|EDZ11355.1| transcription termination/antitermination factor NusB [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|205329474|gb|EDZ16238.1| transcription termination/antitermination factor NusB [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|205333370|gb|EDZ20134.1| transcription termination/antitermination factor NusB [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|205340408|gb|EDZ27172.1| transcription termination/antitermination factor NusB [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|205343985|gb|EDZ30749.1| transcription termination/antitermination factor NusB [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|205349770|gb|EDZ36401.1| transcription termination/antitermination factor NusB [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|206707702|emb|CAR31986.1| N utilization substance protein B [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|224466783|gb|ACN44613.1| transcription antitermination protein NusB [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|226905931|gb|EEH91849.1| transcription antitermination protein NusB [Citrobacter sp. 30_2] gi|261245701|emb|CBG23497.1| N utilization substance protein B [Salmonella enterica subsp. enterica serovar Typhimurium str. D23580] gi|267992129|gb|ACY87014.1| transcription antitermination protein NusB [Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S] gi|291069789|gb|EFE07898.1| transcription antitermination factor NusB [Citrobacter youngae ATCC 29220] gi|301157029|emb|CBW16512.1| N utilization substance protein B [Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344] gi|312911451|dbj|BAJ35425.1| transcription antitermination protein NusB [Salmonella enterica subsp. enterica serovar Typhimurium str. T000240] gi|320084694|emb|CBY94485.1| N utilization substance protein B homolog Protein nusB [Salmonella enterica subsp. enterica serovar Weltevreden str. 2007-60-3289-1] gi|321225145|gb|EFX50206.1| Transcription termination protein NusB [Salmonella enterica subsp. enterica serovar Typhimurium str. TN061786] gi|322614698|gb|EFY11627.1| transcription antitermination protein NusB [Salmonella enterica subsp. enterica serovar Montevideo str. 315996572] gi|322618804|gb|EFY15692.1| transcription antitermination protein NusB [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-1] gi|322623511|gb|EFY20350.1| transcription antitermination protein NusB [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-3] gi|322629191|gb|EFY25970.1| transcription antitermination protein NusB [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-4] gi|322631911|gb|EFY28665.1| transcription antitermination protein NusB [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-1] gi|322637352|gb|EFY34054.1| transcription antitermination protein NusB [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-2] gi|322642037|gb|EFY38647.1| transcription antitermination protein NusB [Salmonella enterica subsp. enterica serovar Montevideo str. 531954] gi|322647856|gb|EFY44331.1| transcription antitermination protein NusB [Salmonella enterica subsp. enterica serovar Montevideo str. NC_MB110209-0054] gi|322652534|gb|EFY48888.1| transcription antitermination protein NusB [Salmonella enterica subsp. enterica serovar Montevideo str. OH_2009072675] gi|322653304|gb|EFY49637.1| transcription antitermination protein NusB [Salmonella enterica subsp. enterica serovar Montevideo str. CASC_09SCPH15965] gi|322660547|gb|EFY56783.1| transcription antitermination protein NusB [Salmonella enterica subsp. enterica serovar Montevideo str. 19N] gi|322664699|gb|EFY60892.1| transcription antitermination protein NusB [Salmonella enterica subsp. enterica serovar Montevideo str. 81038-01] gi|322669248|gb|EFY65398.1| transcription antitermination protein NusB [Salmonella enterica subsp. enterica serovar Montevideo str. MD_MDA09249507] gi|322670793|gb|EFY66926.1| transcription antitermination protein NusB [Salmonella enterica subsp. enterica serovar Montevideo str. 414877] gi|322678968|gb|EFY75023.1| transcription antitermination protein NusB [Salmonella enterica subsp. enterica serovar Montevideo str. 366867] gi|322681996|gb|EFY78021.1| transcription antitermination protein NusB [Salmonella enterica subsp. enterica serovar Montevideo str. 413180] gi|322685175|gb|EFY81172.1| transcription antitermination protein NusB [Salmonella enterica subsp. enterica serovar Montevideo str. 446600] gi|322713490|gb|EFZ05061.1| transcription antitermination protein NusB [Salmonella enterica subsp. enterica serovar Choleraesuis str. A50] gi|323128737|gb|ADX16167.1| transcription antitermination protein NusB [Salmonella enterica subsp. enterica serovar Typhimurium str. 4/74] gi|323194477|gb|EFZ79672.1| transcription antitermination protein NusB [Salmonella enterica subsp. enterica serovar Montevideo str. 609458-1] gi|323196986|gb|EFZ82128.1| transcription antitermination protein NusB [Salmonella enterica subsp. enterica serovar Montevideo str. 556150-1] gi|323203971|gb|EFZ88988.1| transcription antitermination protein NusB [Salmonella enterica subsp. enterica serovar Montevideo str. 609460] gi|323206944|gb|EFZ91897.1| transcription antitermination protein NusB [Salmonella enterica subsp. enterica serovar Montevideo str. 507440-20] gi|323210838|gb|EFZ95710.1| transcription antitermination protein NusB [Salmonella enterica subsp. enterica serovar Montevideo str. 556152] gi|323214529|gb|EFZ99280.1| transcription antitermination protein NusB [Salmonella enterica subsp. enterica serovar Montevideo str. MB101509-0077] gi|323223086|gb|EGA07429.1| transcription antitermination protein NusB [Salmonella enterica subsp. enterica serovar Montevideo str. MB102109-0047] gi|323227035|gb|EGA11216.1| transcription antitermination protein NusB [Salmonella enterica subsp. enterica serovar Montevideo str. MB110209-0055] gi|323230147|gb|EGA14267.1| transcription antitermination protein NusB [Salmonella enterica subsp. enterica serovar Montevideo str. MB111609-0052] gi|323233885|gb|EGA17974.1| transcription antitermination protein NusB [Salmonella enterica subsp. enterica serovar Montevideo str. 2009083312] gi|323238421|gb|EGA22479.1| transcription antitermination protein NusB [Salmonella enterica subsp. enterica serovar Montevideo str. 2009085258] gi|323244109|gb|EGA28118.1| transcription antitermination protein NusB [Salmonella enterica subsp. enterica serovar Montevideo str. 315731156] gi|323246269|gb|EGA30252.1| transcription antitermination protein NusB [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2009159199] gi|323251895|gb|EGA35758.1| transcription antitermination protein NusB [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008282] gi|323257892|gb|EGA41571.1| transcription antitermination protein NusB [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008283] gi|323261095|gb|EGA44687.1| transcription antitermination protein NusB [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008284] gi|323264975|gb|EGA48474.1| transcription antitermination protein NusB [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008285] gi|323272538|gb|EGA55945.1| transcription antitermination protein NusB [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008287] gi|326622120|gb|EGE28465.1| transcription antitermination protein NusB [Salmonella enterica subsp. enterica serovar Dublin str. 3246] gi|326626764|gb|EGE33107.1| transcription antitermination protein NusB [Salmonella enterica subsp. enterica serovar Gallinarum str. 9] gi|332987366|gb|AEF06349.1| transcription antitermination protein NusB [Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1] Length = 139 Score = 53.9 bits (128), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 41/132 (31%), Positives = 65/132 (49%), Gaps = 13/132 (9%) Query: 23 AVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQH 82 AVQALY + ++ Y+F A E DV+ V D+ +FR ++ GV + Sbjct: 13 AVQALYSWQLSQNDIADV-----EYQFLA--EQDVKDV----DVLYFRELLSGVATNSAY 61 Query: 83 IDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDE 142 +D L+ L+ L + ++LR + EL + VP +V I+E + +A F D Sbjct: 62 LDGLMKPYLSR--LLEELGQVEKAVLRIALFELSKRSDVPYKVAINEAIELAKTFGAEDS 119 Query: 143 PKFINAVLDKVS 154 KF+N VLDK + Sbjct: 120 HKFVNGVLDKAA 131 >gi|315108679|gb|EFT80655.1| transcription antitermination factor NusB [Propionibacterium acnes HL030PA2] Length = 261 Score = 53.9 bits (128), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 32/138 (23%), Positives = 65/138 (47%), Gaps = 14/138 (10%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 R AR A+ L++ D+IG E+++ V+ + + ++ G Sbjct: 39 RSKARKQALDILFEADLIGTDPLEVLAARP-------------GVFTNPVRPFAADLVRG 85 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135 V + +D +++ CL+E W+ +R+ + + R GV E++ + P +ISE + ++ Sbjct: 86 VAATQVGLDSVLTDCLSEGWTLARMPRVDRILARLGVFEILHTDT-PNPAVISEAIELSE 144 Query: 136 DFFYGDEPKFINAVLDKV 153 +F D F+N +L V Sbjct: 145 EFSTDDSAPFLNGLLGAV 162 >gi|119356339|ref|YP_910983.1| NusB antitermination factor [Chlorobium phaeobacteroides DSM 266] gi|166215679|sp|A1BDT2|NUSB_CHLPD RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|119353688|gb|ABL64559.1| NusB antitermination factor [Chlorobium phaeobacteroides DSM 266] Length = 165 Score = 53.9 bits (128), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 41/154 (26%), Positives = 77/154 (50%), Gaps = 15/154 (9%) Query: 13 SHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVI 72 ++RR I R +QALY +++ I + + + D + +++F ++ Sbjct: 3 TYRRQI-REKILQALYTLELRDTD----IESAANWLLTKEIQEDPNA------MKFFNLL 51 Query: 73 IHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVC 132 + + + ++ ID I+ T W SR+ +I +ILR + EL+ C +P +V I+E + Sbjct: 52 LKNIKEHREEIDQYIARH-TFNWDMSRIAIIDKNILRMALAELLYCEDIPPKVSINEAIE 110 Query: 133 IAHDFFYGDE-PKFINAVLDKVSRKEEIKRSGCV 165 IA F D+ KF+N +LD + E+K G + Sbjct: 111 IAKKFSSTDKSSKFVNGILDAIFN--ELKAEGKI 142 >gi|239993724|ref|ZP_04714248.1| transcription antitermination protein NusB [Alteromonas macleodii ATCC 27126] Length = 140 Score = 53.9 bits (128), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 34/92 (36%), Positives = 45/92 (48%), Gaps = 2/92 (2%) Query: 64 VDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPV 123 VD+ +F+ ++ GV +D I L LD I +ILR LEL E VP Sbjct: 43 VDMAYFQALLRGVAHNASKLDTTIKPYLGR--LPEELDAIEKAILRIATLELTERIDVPY 100 Query: 124 EVIISEYVCIAHDFFYGDEPKFINAVLDKVSR 155 VII+E + +A F + KFIN LDK R Sbjct: 101 RVIINEAIELAKAFGAEESHKFINGALDKAVR 132 >gi|150020739|ref|YP_001306093.1| transcription antitermination protein NusB [Thermosipho melanesiensis BI429] gi|166215726|sp|A6LLA7|NUSB_THEM4 RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|149793260|gb|ABR30708.1| NusB antitermination factor [Thermosipho melanesiensis BI429] Length = 141 Score = 53.9 bits (128), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 29/88 (32%), Positives = 48/88 (54%), Gaps = 1/88 (1%) Query: 73 IHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVC 132 + G+ + ID +IS L + W+ RL + +ILR G ELI +P+EV + E + Sbjct: 50 LKGIRENIDVIDEIISKYL-KNWTLERLSVTDRNILRLGTYELIYVDDIPIEVTLDEMIE 108 Query: 133 IAHDFFYGDEPKFINAVLDKVSRKEEIK 160 + + + KF+N VLDK+++ E K Sbjct: 109 LGKTYGTENSGKFVNGVLDKIAKAEAPK 136 >gi|94968243|ref|YP_590291.1| NusB antitermination factor [Candidatus Koribacter versatilis Ellin345] gi|119372272|sp|Q1ISD3|NUSB_ACIBL RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|94550293|gb|ABF40217.1| NusB antitermination factor [Candidatus Koribacter versatilis Ellin345] Length = 146 Score = 53.9 bits (128), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 44/146 (30%), Positives = 67/146 (45%), Gaps = 11/146 (7%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 R +R A+Q L+Q+D+ S + + R D E +V S +DL H Sbjct: 8 RRKSRELALQMLFQMDMGKQSADHVEKTFWAER--KDLEEEVRS--FAIDL------FHV 57 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135 R + ID LI E W R+ + +ILR E + P V+I+E + IA Sbjct: 58 AEKRSEEIDKLIEKH-AEHWRMERMAAVDRNILRGACAEFMGFPKTPKPVVINESLEIAR 116 Query: 136 DFFYGDEPKFINAVLDKVSRKEEIKR 161 F + +FIN VLD V+R+ + +R Sbjct: 117 RFSSPESVQFINGVLDSVARELDAER 142 >gi|332141882|ref|YP_004427620.1| transcription antitermination protein NusB [Alteromonas macleodii str. 'Deep ecotype'] gi|238693257|sp|B4RVY5|NUSB_ALTMD RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|327551904|gb|AEA98622.1| transcription antitermination protein NusB [Alteromonas macleodii str. 'Deep ecotype'] Length = 140 Score = 53.9 bits (128), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 34/92 (36%), Positives = 45/92 (48%), Gaps = 2/92 (2%) Query: 64 VDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPV 123 VD+ +F+ ++ GV +D I L LD I +ILR LEL E VP Sbjct: 43 VDMAYFQALLRGVAHNASKLDATIKPYLGR--LPEELDAIEKAILRIATLELTERIDVPY 100 Query: 124 EVIISEYVCIAHDFFYGDEPKFINAVLDKVSR 155 VII+E + +A F + KFIN LDK R Sbjct: 101 RVIINEAIELAKAFGAEESHKFINGALDKAVR 132 >gi|312866399|ref|ZP_07726617.1| transcription antitermination factor NusB [Streptococcus downei F0415] gi|311098093|gb|EFQ56319.1| transcription antitermination factor NusB [Streptococcus downei F0415] Length = 139 Score = 53.9 bits (128), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 28/81 (34%), Positives = 42/81 (51%) Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131 ++ G +D ID LIS L EKWS RL + S+LR G+ E+ P +V ++E + Sbjct: 55 LVKGTVDNLTEIDGLISENLKEKWSLERLTLTDRSLLRLGLYEIKYHEETPAKVALNEVI 114 Query: 132 CIAHDFFYGDEPKFINAVLDK 152 + + KFIN +L K Sbjct: 115 ELTKAYSDQTSAKFINGILTK 135 >gi|219684900|ref|ZP_03539842.1| transcription antitermination factor NusB [Borrelia garinii PBr] gi|219671845|gb|EED28900.1| transcription antitermination factor NusB [Borrelia garinii PBr] Length = 145 Score = 53.9 bits (128), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 38/140 (27%), Positives = 67/140 (47%), Gaps = 9/140 (6%) Query: 20 RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79 R+ A Q +Y IDI + +I + D LD+E+ + ++ +++G + Sbjct: 8 RVLAFQKIYSIDINQSAMDDIFDIFT----IEDKGLDIENESIK---SFYSSLVNGTFNN 60 Query: 80 KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLEL-IECHSVPVEVIISEYVCIAHDFF 138 ++ID LI ++ WS R+D + +ILR GV L + +I E + IA + Sbjct: 61 LEYIDNLIRD-ISWNWSLDRMDKVDLAILRMGVYSLKFQNFENSKRALIDEAILIAKKYG 119 Query: 139 YGDEPKFINAVLDKVSRKEE 158 + KFIN +LD + + E Sbjct: 120 SKNSDKFINGILDALLKNME 139 >gi|187734931|ref|YP_001877043.1| NusB antitermination factor [Akkermansia muciniphila ATCC BAA-835] gi|187424983|gb|ACD04262.1| NusB antitermination factor [Akkermansia muciniphila ATCC BAA-835] Length = 294 Score = 53.9 bits (128), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 30/100 (30%), Positives = 51/100 (51%), Gaps = 6/100 (6%) Query: 56 DVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLEL 115 D E +Y + + ++ R+ +D I S L E +S R+ I +ILR G EL Sbjct: 196 DAEELYREA-----KTLGEDILRRRDGLDAAIDSTL-ENYSPERVSAIDRAILRLGAYEL 249 Query: 116 IECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSR 155 + +P ++ISE + ++ F + P+FIN VL +S+ Sbjct: 250 LHRKDLPAPIVISEAIRLSERFSSAESPRFINGVLAGISK 289 >gi|225551926|ref|ZP_03772866.1| transcription antitermination factor NusB [Borrelia sp. SV1] gi|225370924|gb|EEH00354.1| transcription antitermination factor NusB [Borrelia sp. SV1] Length = 145 Score = 53.9 bits (128), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 39/140 (27%), Positives = 66/140 (47%), Gaps = 9/140 (6%) Query: 20 RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79 R+ A Q +Y IDI + +I + D LD+E+ + ++ ++ G + Sbjct: 8 RVLAFQKIYSIDINQSAMDDIFDIFN----IEDKGLDIENESIK---SFYSSLVIGTFNN 60 Query: 80 KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLEL-IECHSVPVEVIISEYVCIAHDFF 138 +HID LI ++ WS R+D + +ILR GV L + +I E + IA + Sbjct: 61 LEHIDSLIRD-ISLNWSLERMDKVDLAILRMGVYSLKFQNFENSKRAVIDEAILIAKKYG 119 Query: 139 YGDEPKFINAVLDKVSRKEE 158 + KFIN +LD + + E Sbjct: 120 SKNSYKFINGILDALLKNME 139 >gi|26522749|dbj|BAC44853.1| NusB protein [Photobacterium phosphoreum] Length = 157 Score = 53.9 bits (128), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 43/152 (28%), Positives = 71/152 (46%), Gaps = 14/152 (9%) Query: 10 LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVY-------L 62 +K + RR AR AVQA+Y + + +I E Y D + E Sbjct: 5 VKPAARRN-ARQFAVQAIYSWQLTKGNVADI----EQYFLSGDKFEEEEHQADAPVCKAP 59 Query: 63 HVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVP 122 D+ +FR + GV+ Q +D + L+ LD + ++LR + E+++ VP Sbjct: 60 DTDVSYFRDLFAGVVLSHQELDSKMRPYLSR--PLQDLDQMELALLRLAMYEMVKREDVP 117 Query: 123 VEVIISEYVCIAHDFFYGDEPKFINAVLDKVS 154 +V+I+E + +A F D KF+N VLDK + Sbjct: 118 FKVVINEAIELAKLFGAEDSHKFVNGVLDKAA 149 >gi|302550131|ref|ZP_07302473.1| transcription antitermination factor NusB [Streptomyces viridochromogenes DSM 40736] gi|302467749|gb|EFL30842.1| transcription antitermination factor NusB [Streptomyces viridochromogenes DSM 40736] Length = 144 Score = 53.9 bits (128), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 38/139 (27%), Positives = 65/139 (46%), Gaps = 11/139 (7%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFC-ADTELDVESVYLHVDLEWFRVIIH 74 R AR A Q L++ D G +++++ R ADT S Y ++ Sbjct: 4 RNTARKRAFQILFEGDQRGAEALTVLADW--VRLSRADTRQPPVSEYTME-------LVE 54 Query: 75 GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134 G + ID LI+ + W+ R+ ++ +ILR G ELI + P V++ E V +A Sbjct: 55 GYAKHAKRIDELIAQY-SVGWTLDRMPVVDRNILRLGAYELIWVDATPDAVVLDEMVQLA 113 Query: 135 HDFFYGDEPKFINAVLDKV 153 +F + P F+N +L ++ Sbjct: 114 KEFSTDESPSFVNGLLGRL 132 >gi|219685303|ref|ZP_03540122.1| transcription antitermination factor NusB [Borrelia garinii Far04] gi|219673076|gb|EED30096.1| transcription antitermination factor NusB [Borrelia garinii Far04] Length = 142 Score = 53.5 bits (127), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 38/140 (27%), Positives = 67/140 (47%), Gaps = 9/140 (6%) Query: 20 RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79 R+ A Q +Y IDI + +I + D LD+E+ + ++ +++G + Sbjct: 5 RVLAFQKIYSIDINQSAMDDIFDIFT----IEDKGLDIENESIK---SFYSSLVNGTFNN 57 Query: 80 KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLEL-IECHSVPVEVIISEYVCIAHDFF 138 ++ID LI ++ WS R+D + +ILR GV L + +I E + IA + Sbjct: 58 LEYIDNLIRD-ISWNWSLDRMDKVDLAILRMGVYSLKFQNFENSKRALIDEAILIAKKYG 116 Query: 139 YGDEPKFINAVLDKVSRKEE 158 + KFIN +LD + + E Sbjct: 117 SKNSDKFINGILDALLKNME 136 >gi|183221521|ref|YP_001839517.1| transcription antitermination protein NusB [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] gi|189911605|ref|YP_001963160.1| transcription antitermination protein NusB [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|238687781|sp|B0SB76|NUSB_LEPBA RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|238687828|sp|B0ST01|NUSB_LEPBP RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|167776281|gb|ABZ94582.1| Transcription antitermination protein [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|167779943|gb|ABZ98241.1| N utilization substance protein B-like protein (Protein NusB); L factor [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] Length = 140 Score = 53.5 bits (127), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 42/145 (28%), Positives = 71/145 (48%), Gaps = 14/145 (9%) Query: 13 SHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVI 72 S RG R A+ LYQID++G + +++ Y E +V+L Sbjct: 3 SRHRG--RSLALMCLYQIDLVGTDPDRAM-KFDWYDKKITREEKDYAVFL---------- 49 Query: 73 IHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVC 132 + GV++ ++ ID LI +E W SR+ ++ ILR +L L + + V+I+E V Sbjct: 50 VKGVVENRKAIDTLIKK-YSENWELSRISVVNRCILRLSILSLQKEPFLAAPVVINEAVE 108 Query: 133 IAHDFFYGDEPKFINAVLDKVSRKE 157 + +F + +FIN +LD +KE Sbjct: 109 LTKEFETEESAQFINGLLDAFYKKE 133 >gi|320105797|ref|YP_004181387.1| NusB antitermination factor [Terriglobus saanensis SP1PR4] gi|319924318|gb|ADV81393.1| NusB antitermination factor [Terriglobus saanensis SP1PR4] Length = 146 Score = 53.5 bits (127), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 41/148 (27%), Positives = 70/148 (47%), Gaps = 9/148 (6%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRF--CADTELDVESVYLHVDLEWFRVII 73 R +R A+Q L+Q D+ S+ ++ + R +D ++ DL FRV Sbjct: 4 RRKSRELAMQMLFQADLGKQSSEDVQKSFWNAREDEAGKATIDADTQGFAEDL--FRV-- 59 Query: 74 HGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCI 133 M +++ ID L+ + W +R+ + ++LR V E+I S P +II+E + I Sbjct: 60 --AMVKQEEIDTLLEEH-AQNWRVARMAAVDRNLLRMAVAEMIGYPSTPHPIIINEALEI 116 Query: 134 AHDFFYGDEPKFINAVLDKVSRKEEIKR 161 + + F+N VLD V+R KR Sbjct: 117 GRRYAAPESVNFLNGVLDAVARALMAKR 144 >gi|238021694|ref|ZP_04602120.1| hypothetical protein GCWU000324_01597 [Kingella oralis ATCC 51147] gi|237866308|gb|EEP67350.1| hypothetical protein GCWU000324_01597 [Kingella oralis ATCC 51147] Length = 145 Score = 53.5 bits (127), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 45/147 (30%), Positives = 64/147 (43%), Gaps = 20/147 (13%) Query: 10 LKLSHRRGIARLAAVQALYQIDIIGCSTTEI---ISEYETYRFCADTELDVESVYLHVDL 66 +++S RR AR AVQALYQ+ + E+ I E YR H D Sbjct: 1 MRVSPRRR-AREFAVQALYQVALNKIPAPEVAQHIRESNDYR--------------HADG 45 Query: 67 EWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVI 126 E F I G + ++ +I L + ++ I S+L V EL P VI Sbjct: 46 ELFTAIFFGAHNNQREYMQIIRPLLDRDENL--INPIERSVLLVAVHELKAMPETPYPVI 103 Query: 127 ISEYVCIAHDFFYGDEPKFINAVLDKV 153 I+E + + F D KFIN +LDK+ Sbjct: 104 INEAIEVTKTFGGTDSHKFINGILDKL 130 >gi|22124909|ref|NP_668332.1| transcription antitermination protein NusB [Yersinia pestis KIM 10] gi|45440599|ref|NP_992138.1| transcription antitermination protein NusB [Yersinia pestis biovar Microtus str. 91001] gi|51595286|ref|YP_069477.1| transcription antitermination protein NusB [Yersinia pseudotuberculosis IP 32953] gi|108808666|ref|YP_652582.1| transcription antitermination protein NusB [Yersinia pestis Antiqua] gi|108811072|ref|YP_646839.1| transcription antitermination protein NusB [Yersinia pestis Nepal516] gi|145600075|ref|YP_001164151.1| transcription antitermination protein NusB [Yersinia pestis Pestoides F] gi|149364973|ref|ZP_01887008.1| N utilization substance protein B [Yersinia pestis CA88-4125] gi|153950126|ref|YP_001402075.1| transcription antitermination protein NusB [Yersinia pseudotuberculosis IP 31758] gi|162421924|ref|YP_001607525.1| transcription antitermination protein NusB [Yersinia pestis Angola] gi|165926545|ref|ZP_02222377.1| transcription antitermination factor NusB [Yersinia pestis biovar Orientalis str. F1991016] gi|165935993|ref|ZP_02224563.1| transcription antitermination factor NusB [Yersinia pestis biovar Orientalis str. IP275] gi|166011125|ref|ZP_02232023.1| transcription antitermination factor NusB [Yersinia pestis biovar Antiqua str. E1979001] gi|166212965|ref|ZP_02239000.1| transcription antitermination factor NusB [Yersinia pestis biovar Antiqua str. B42003004] gi|167398502|ref|ZP_02304026.1| transcription antitermination factor NusB [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167421645|ref|ZP_02313398.1| transcription antitermination factor NusB [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167423478|ref|ZP_02315231.1| transcription antitermination factor NusB [Yersinia pestis biovar Mediaevalis str. K1973002] gi|170025473|ref|YP_001721978.1| transcription antitermination protein NusB [Yersinia pseudotuberculosis YPIII] gi|186894303|ref|YP_001871415.1| transcription antitermination protein NusB [Yersinia pseudotuberculosis PB1/+] gi|218930211|ref|YP_002348086.1| transcription antitermination protein NusB [Yersinia pestis CO92] gi|229838786|ref|ZP_04458945.1| transcription antitermination protein [Yersinia pestis biovar Orientalis str. PEXU2] gi|229896060|ref|ZP_04511230.1| transcription antitermination protein [Yersinia pestis Pestoides A] gi|229899354|ref|ZP_04514497.1| transcription antitermination protein [Yersinia pestis biovar Orientalis str. India 195] gi|229901299|ref|ZP_04516421.1| transcription antitermination protein [Yersinia pestis Nepal516] gi|270489488|ref|ZP_06206562.1| transcription antitermination factor NusB [Yersinia pestis KIM D27] gi|294504909|ref|YP_003568971.1| transcription antitermination protein NusB [Yersinia pestis Z176003] gi|22095956|sp|Q8ZC42|NUSB_YERPE RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|81640219|sp|Q66DV7|NUSB_YERPS RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|119390849|sp|Q1C4I5|NUSB_YERPA RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|119390850|sp|Q1CL91|NUSB_YERPN RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|166215730|sp|A4TPG6|NUSB_YERPP RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|166918813|sp|A7FLE7|NUSB_YERP3 RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|238687286|sp|A9R2J9|NUSB_YERPG RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|238688409|sp|B1JIE1|NUSB_YERPY RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|238691415|sp|B2K6T4|NUSB_YERPB RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|21957745|gb|AAM84583.1|AE013703_13 transcription termination; L factor [Yersinia pestis KIM 10] gi|45435456|gb|AAS61015.1| N utilization substance protein B [Yersinia pestis biovar Microtus str. 91001] gi|51588568|emb|CAH20176.1| transcription termination; L factor [Yersinia pseudotuberculosis IP 32953] gi|108774720|gb|ABG17239.1| N utilization substance protein B [Yersinia pestis Nepal516] gi|108780579|gb|ABG14637.1| N utilization substance protein B [Yersinia pestis Antiqua] gi|115348822|emb|CAL21776.1| N utilization substance protein B [Yersinia pestis CO92] gi|145211771|gb|ABP41178.1| N utilization substance protein B [Yersinia pestis Pestoides F] gi|149291386|gb|EDM41460.1| N utilization substance protein B [Yersinia pestis CA88-4125] gi|152961621|gb|ABS49082.1| transcription antitermination factor NusB [Yersinia pseudotuberculosis IP 31758] gi|162354739|gb|ABX88687.1| transcription antitermination factor NusB [Yersinia pestis Angola] gi|165916138|gb|EDR34745.1| transcription antitermination factor NusB [Yersinia pestis biovar Orientalis str. IP275] gi|165921473|gb|EDR38670.1| transcription antitermination factor NusB [Yersinia pestis biovar Orientalis str. F1991016] gi|165990125|gb|EDR42426.1| transcription antitermination factor NusB [Yersinia pestis biovar Antiqua str. E1979001] gi|166205752|gb|EDR50232.1| transcription antitermination factor NusB [Yersinia pestis biovar Antiqua str. B42003004] gi|166960564|gb|EDR56585.1| transcription antitermination factor NusB [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167051006|gb|EDR62414.1| transcription antitermination factor NusB [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167057648|gb|EDR67394.1| transcription antitermination factor NusB [Yersinia pestis biovar Mediaevalis str. K1973002] gi|169752007|gb|ACA69525.1| NusB antitermination factor [Yersinia pseudotuberculosis YPIII] gi|186697329|gb|ACC87958.1| NusB antitermination factor [Yersinia pseudotuberculosis PB1/+] gi|229681228|gb|EEO77322.1| transcription antitermination protein [Yersinia pestis Nepal516] gi|229687756|gb|EEO79829.1| transcription antitermination protein [Yersinia pestis biovar Orientalis str. India 195] gi|229695152|gb|EEO85199.1| transcription antitermination protein [Yersinia pestis biovar Orientalis str. PEXU2] gi|229700983|gb|EEO89012.1| transcription antitermination protein [Yersinia pestis Pestoides A] gi|262362975|gb|ACY59696.1| transcription antitermination protein NusB [Yersinia pestis D106004] gi|262366895|gb|ACY63452.1| transcription antitermination protein NusB [Yersinia pestis D182038] gi|270337992|gb|EFA48769.1| transcription antitermination factor NusB [Yersinia pestis KIM D27] gi|294355368|gb|ADE65709.1| transcription antitermination protein NusB [Yersinia pestis Z176003] gi|320016368|gb|ADV99939.1| transcription antitermination protein [Yersinia pestis biovar Medievalis str. Harbin 35] Length = 138 Score = 53.5 bits (127), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 43/134 (32%), Positives = 65/134 (48%), Gaps = 17/134 (12%) Query: 23 AVQALYQIDIIGCSTTEIISEYETYRFCADTELDV--ESVYLHVDLEWFRVIIHGVMDRK 80 AVQALY + S +I AD EL E VD+ +FR ++ GV Sbjct: 13 AVQALYSWQL---SKNDI----------ADVELQFLSEQDVKDVDIAYFRELLSGVAVNA 59 Query: 81 QHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYG 140 +D L++ L+ + L + ++LR + EL + VP +V I+E + +A F Sbjct: 60 ASLDALMAPFLSRQ--LEELGQVERAVLRIALFELSKRDDVPYKVAINEAIELAKTFGAE 117 Query: 141 DEPKFINAVLDKVS 154 D KF+N VLDKV+ Sbjct: 118 DSHKFVNGVLDKVA 131 >gi|307326792|ref|ZP_07605984.1| NusB antitermination factor [Streptomyces violaceusniger Tu 4113] gi|306887555|gb|EFN18549.1| NusB antitermination factor [Streptomyces violaceusniger Tu 4113] Length = 150 Score = 53.5 bits (127), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 35/139 (25%), Positives = 62/139 (44%), Gaps = 9/139 (6%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 R AR A Q L++ D G + +++++ D + V + ++ G Sbjct: 4 RNKARKRAFQILFEADQRGATVQIVLADWIRLARTDDRQPPVSEYTMQ--------LVEG 55 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135 ID LI++ W+ R+ ++ +ILR G EL+ P V+I E V +A Sbjct: 56 YAQHIDRIDELIATYAV-GWTLDRMPVVDRNILRLGAYELVWEDETPDAVVIDEAVQLAK 114 Query: 136 DFFYGDEPKFINAVLDKVS 154 +F D P F+N +L ++ Sbjct: 115 EFSTDDSPAFVNGLLGRIK 133 >gi|110597193|ref|ZP_01385482.1| transcription antitermination factor NusB [Chlorobium ferrooxidans DSM 13031] gi|110341384|gb|EAT59849.1| transcription antitermination factor NusB [Chlorobium ferrooxidans DSM 13031] Length = 191 Score = 53.5 bits (127), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 44/162 (27%), Positives = 79/162 (48%), Gaps = 31/162 (19%) Query: 13 SHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVD------- 65 ++RR I R +QALY I+I +T++D + +L Sbjct: 30 TYRRQI-REKILQALYTIEI------------------RETDIDSAAGWLLTQEILDDAN 70 Query: 66 -LEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVE 124 +++F +++ + + ++ ID I+ T W SR+ +I +ILR + E++ C +P + Sbjct: 71 AMKFFNLLLKSIKENREEIDRYIAKH-TFNWDMSRIAIIDKNILRMALAEILYCEDIPPK 129 Query: 125 VIISEYVCIAHDFFYGDE-PKFINAVLDKVSRKEEIKRSGCV 165 V I+E + IA F D+ KF+N +LD + E+K G V Sbjct: 130 VSINEAIEIAKKFTSTDKSSKFVNGILDAIF--NELKAEGKV 169 >gi|293392266|ref|ZP_06636600.1| transcription antitermination factor NusB [Aggregatibacter actinomycetemcomitans D7S-1] gi|290952800|gb|EFE02919.1| transcription antitermination factor NusB [Aggregatibacter actinomycetemcomitans D7S-1] Length = 141 Score = 53.5 bits (127), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 48/144 (33%), Positives = 73/144 (50%), Gaps = 14/144 (9%) Query: 11 KLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFR 70 K+S RR AR AVQALY I ++ EI+ F TE D++ V D +FR Sbjct: 7 KISPRRR-ARECAVQALYSW-AISKNSPEIVE----LNFI--TEQDMKGV----DTPYFR 54 Query: 71 VIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEY 130 + ++ + +D + L + LD I +ILR V EL +VP +V+I+E Sbjct: 55 KLFRQTVENVEAVDATMQYYLDR--TLEELDPIEKAILRLAVYELQFEANVPYKVVINEA 112 Query: 131 VCIAHDFFYGDEPKFINAVLDKVS 154 + +A F + K+IN VLDK++ Sbjct: 113 IEVAKVFGADESHKYINGVLDKIA 136 >gi|271499577|ref|YP_003332602.1| NusB antitermination factor [Dickeya dadantii Ech586] gi|270343132|gb|ACZ75897.1| NusB antitermination factor [Dickeya dadantii Ech586] Length = 139 Score = 53.5 bits (127), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 43/134 (32%), Positives = 65/134 (48%), Gaps = 17/134 (12%) Query: 23 AVQALYQIDIIGCSTTEIISEYETYRFCADTELDV--ESVYLHVDLEWFRVIIHGVMDRK 80 AVQALY + S +I AD EL E VD+ +FR ++ GV + Sbjct: 13 AVQALYSWQL---SKNDI----------ADVELQFLSEQDVKGVDIAYFRELLAGVATQA 59 Query: 81 QHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYG 140 + +D ++ L+ + + L + +ILR V EL + VP +V I+E + +A F Sbjct: 60 EKLDAQMAPYLSRQ--LNELGQVERAILRLAVYELSKREDVPYKVAINEAIELAKVFGAE 117 Query: 141 DEPKFINAVLDKVS 154 D KF+N VLDK Sbjct: 118 DSHKFVNGVLDKAG 131 >gi|242240313|ref|YP_002988494.1| transcription antitermination protein NusB [Dickeya dadantii Ech703] gi|242132370|gb|ACS86672.1| NusB antitermination factor [Dickeya dadantii Ech703] Length = 139 Score = 53.5 bits (127), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 43/134 (32%), Positives = 64/134 (47%), Gaps = 17/134 (12%) Query: 23 AVQALYQIDIIGCSTTEIISEYETYRFCADTELDV--ESVYLHVDLEWFRVIIHGVMDRK 80 AVQALY + S +I AD EL E D+ +FR ++ GV + Sbjct: 13 AVQALYSWQL---SKNDI----------ADVELQFLSEQDVKGADITYFRELLTGVATQA 59 Query: 81 QHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYG 140 + +D L++ L+ + L + +ILR V EL + VP +V I+E + +A F Sbjct: 60 ERLDALMAPYLSRQ--LDELGQVERAILRLAVYELSKREDVPYKVAINEAIELAKVFGAE 117 Query: 141 DEPKFINAVLDKVS 154 D KF+N VLDK Sbjct: 118 DSHKFVNGVLDKAG 131 >gi|290893532|ref|ZP_06556515.1| transcription antitermination protein NusB [Listeria monocytogenes FSL J2-071] gi|290556877|gb|EFD90408.1| transcription antitermination protein NusB [Listeria monocytogenes FSL J2-071] Length = 128 Score = 53.5 bits (127), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 44/142 (30%), Positives = 66/142 (46%), Gaps = 21/142 (14%) Query: 15 RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74 +R AR A+QAL+QI++ S + I + + E D ++ ++ Sbjct: 2 KRREAREKALQALFQIELNEMSLDQAI------KNIMEDERD----------DYMEKLVE 45 Query: 75 GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134 GVM K ID +I L + W RL + S+LR V E+ VP V ++E + IA Sbjct: 46 GVMANKVEIDAIIEPNL-DNWRIDRLSKVDLSLLRLSVYEIKYLDDVPNRVSLNESIEIA 104 Query: 135 HDFFYGDEP--KFINAVLDKVS 154 Y DE KFIN VL ++ Sbjct: 105 K--IYSDEKSSKFINGVLANIA 124 >gi|145220268|ref|YP_001130977.1| NusB antitermination factor [Prosthecochloris vibrioformis DSM 265] gi|189035896|sp|A4SG66|NUSB_PROVI RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|145206432|gb|ABP37475.1| NusB antitermination factor [Chlorobium phaeovibrioides DSM 265] Length = 164 Score = 53.5 bits (127), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 44/156 (28%), Positives = 78/156 (50%), Gaps = 17/156 (10%) Query: 13 SHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVI 72 ++RR I R +QALY +++ T AD + +++F ++ Sbjct: 3 TYRRQI-REKILQALYTLELRDTDIDSAAGWLLTPEILADPKA----------MKFFNLL 51 Query: 73 IHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVC 132 + + + + ID I++ T W SR+ +I +ILR + EL+ C +P +V I+E + Sbjct: 52 LGNIKEHMEEIDRYIAAH-TFNWDMSRIAIIDKNILRMAMAELLYCDDIPPKVSINEAIE 110 Query: 133 IAHDFFYGDE-PKFINAVLDKV--SRKEE--IKRSG 163 IA F D+ KF+N +LD + + KEE I ++G Sbjct: 111 IAKKFSSTDKSSKFVNGILDAIFNALKEEGKINKNG 146 >gi|226320701|ref|ZP_03796259.1| transcription antitermination factor NusB [Borrelia burgdorferi 29805] gi|226233917|gb|EEH32640.1| transcription antitermination factor NusB [Borrelia burgdorferi 29805] Length = 693 Score = 53.5 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 40/140 (28%), Positives = 66/140 (47%), Gaps = 9/140 (6%) Query: 20 RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79 R+ A Q +Y IDI + +I + D LD+E+ + ++ ++ G + Sbjct: 5 RVLAFQKIYSIDINQSAMDDIFDIFNI----EDKGLDIENESIK---SFYSSLVIGTFNN 57 Query: 80 KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLEL-IECHSVPVEVIISEYVCIAHDFF 138 +HID LI ++ WS R+D + +ILR GV L + II E + IA + Sbjct: 58 LEHIDSLIRD-ISLNWSLERMDKVDLAILRMGVYSLKFQNFENSKRAIIDEAILIAKKYG 116 Query: 139 YGDEPKFINAVLDKVSRKEE 158 + KFIN +LD + + E Sbjct: 117 SKNSYKFINGILDALLKNME 136 >gi|152979151|ref|YP_001344780.1| transcription antitermination protein NusB [Actinobacillus succinogenes 130Z] gi|171704320|sp|A6VPE8|NUSB_ACTSZ RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|150840874|gb|ABR74845.1| NusB antitermination factor [Actinobacillus succinogenes 130Z] Length = 142 Score = 53.5 bits (127), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 46/144 (31%), Positives = 67/144 (46%), Gaps = 14/144 (9%) Query: 11 KLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFR 70 K+S RR AR AVQALY + TEI TE D++ V D +FR Sbjct: 7 KVSPRRR-ARECAVQALYSWAVSNNDATEI-------ELSFITEQDMKGV----DTPYFR 54 Query: 71 VIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEY 130 + + + +D+ I+ L + L I ++LR EL VP +V I+E Sbjct: 55 KLFRNTVTYLESVDVTIAPFLDR--TSEELTPIEKAVLRLATYELKYEPDVPYKVAINEA 112 Query: 131 VCIAHDFFYGDEPKFINAVLDKVS 154 + +A F D K+IN VLDK++ Sbjct: 113 IELAKTFGAEDSHKYINGVLDKIA 136 >gi|319789884|ref|YP_004151517.1| NusB antitermination factor [Thermovibrio ammonificans HB-1] gi|317114386|gb|ADU96876.1| NusB antitermination factor [Thermovibrio ammonificans HB-1] Length = 142 Score = 53.5 bits (127), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 44/150 (29%), Positives = 69/150 (46%), Gaps = 16/150 (10%) Query: 10 LKLSHR-RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEW 68 + L++R + AR A +YQ+D+ E+ Y + E+ S YL Sbjct: 1 MALTNREKKKAREHACLIMYQVDVGNLPLKEVTENYWSDFGKEKEEIKELSEYL------ 54 Query: 69 FRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIIS 128 + ++ + +D I L + W RL + SILR E++ P E +I+ Sbjct: 55 ----VKKTIEHLEEVDRAIGKHLKKGWVIERLLPMDRSILRVASYEILNEEISPPEAVIN 110 Query: 129 EYVCIAHDFFYGDE---PKFINAVLDKVSR 155 + V IA YG++ PKFINA+LDKV R Sbjct: 111 DAVEIAKS--YGEDEKSPKFINAILDKVKR 138 >gi|238783631|ref|ZP_04627652.1| N utilization substance protein B [Yersinia bercovieri ATCC 43970] gi|238715509|gb|EEQ07500.1| N utilization substance protein B [Yersinia bercovieri ATCC 43970] Length = 138 Score = 53.5 bits (127), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 42/134 (31%), Positives = 65/134 (48%), Gaps = 17/134 (12%) Query: 23 AVQALYQIDIIGCSTTEIISEYETYRFCADTELDV--ESVYLHVDLEWFRVIIHGVMDRK 80 AVQALY + S +I AD EL E VD+ +FR ++ GV Sbjct: 13 AVQALYSWQL---SKNDI----------ADVELQFLSEQDVKDVDIAYFRELLSGVAVNA 59 Query: 81 QHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYG 140 +D L++ L+ + L + ++LR + EL + VP +V I+E + +A F Sbjct: 60 ASLDALMAPVLSRQ--LEELGQVERAVLRIALFELSKREDVPYKVAINEAIELAKTFGAE 117 Query: 141 DEPKFINAVLDKVS 154 D KF+N VLDK++ Sbjct: 118 DSHKFVNGVLDKLA 131 >gi|319937360|ref|ZP_08011767.1| hypothetical protein HMPREF9488_02602 [Coprobacillus sp. 29_1] gi|319807726|gb|EFW04319.1| hypothetical protein HMPREF9488_02602 [Coprobacillus sp. 29_1] Length = 134 Score = 53.5 bits (127), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 42/142 (29%), Positives = 65/142 (45%), Gaps = 16/142 (11%) Query: 15 RRGIARLAAVQALYQIDIIGCSTTEII---SEYETYRFCADTELDVESVYLHVDLEWFRV 71 RR IAR A +YQ ++ S +I+ SE +T +T + + R Sbjct: 5 RRQIAREKATIGVYQNLLVDSSLEDILTFLSEEKTLTKSEET------------MAFSRW 52 Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131 ++ + K+ LI L + W F RL M+ +IL EL+E +P ++I+E V Sbjct: 53 LVETTLQNKESYQTLIEKHLKKGWKFERLSMMEKAILMIAACELLES-DLPKTIVINEAV 111 Query: 132 CIAHDFFYGDEPKFINAVLDKV 153 A F D KFIN VL ++ Sbjct: 112 LNAKKFCDDDSYKFINGVLGQI 133 >gi|15800145|ref|NP_286157.1| transcription antitermination protein NusB [Escherichia coli O157:H7 EDL933] gi|15829723|ref|NP_308496.1| transcription antitermination protein NusB [Escherichia coli O157:H7 str. Sakai] gi|16128401|ref|NP_414950.1| transcription antitermination protein [Escherichia coli str. K-12 substr. MG1655] gi|24111794|ref|NP_706304.1| transcription antitermination protein NusB [Shigella flexneri 2a str. 301] gi|26246422|ref|NP_752461.1| transcription antitermination protein NusB [Escherichia coli CFT073] gi|30061911|ref|NP_836082.1| transcription antitermination protein NusB [Shigella flexneri 2a str. 2457T] gi|74310985|ref|YP_309404.1| transcription antitermination protein NusB [Shigella sonnei Ss046] gi|82542904|ref|YP_406851.1| transcription antitermination protein NusB [Shigella boydii Sb227] gi|82775679|ref|YP_402026.1| transcription antitermination protein NusB [Shigella dysenteriae Sd197] gi|89107286|ref|AP_001066.1| transcription antitermination protein [Escherichia coli str. K-12 substr. W3110] gi|91209485|ref|YP_539471.1| transcription antitermination protein NusB [Escherichia coli UTI89] gi|110640677|ref|YP_668405.1| transcription antitermination protein NusB [Escherichia coli 536] gi|110804438|ref|YP_687958.1| transcription antitermination protein NusB [Shigella flexneri 5 str. 8401] gi|157154883|ref|YP_001461598.1| transcription antitermination protein NusB [Escherichia coli E24377A] gi|157159937|ref|YP_001457255.1| transcription antitermination protein NusB [Escherichia coli HS] gi|170021212|ref|YP_001726166.1| transcription antitermination protein NusB [Escherichia coli ATCC 8739] gi|170080002|ref|YP_001729322.1| transcription antitermination protein [Escherichia coli str. K-12 substr. DH10B] gi|170681155|ref|YP_001742553.1| transcription antitermination protein NusB [Escherichia coli SMS-3-5] gi|170767720|ref|ZP_02902173.1| transcription termination/antitermination factor NusB [Escherichia albertii TW07627] gi|187730987|ref|YP_001879125.1| transcription antitermination protein NusB [Shigella boydii CDC 3083-94] gi|187776230|ref|ZP_02801288.2| transcription termination/antitermination factor NusB [Escherichia coli O157:H7 str. EC4196] gi|188024918|ref|ZP_02774897.2| transcription termination/antitermination factor NusB [Escherichia coli O157:H7 str. EC4113] gi|188493154|ref|ZP_03000424.1| transcription termination/antitermination factor NusB [Escherichia coli 53638] gi|189010625|ref|ZP_02808286.2| transcription termination/antitermination factor NusB [Escherichia coli O157:H7 str. EC4076] gi|189402368|ref|ZP_02781962.2| transcription termination/antitermination factor NusB [Escherichia coli O157:H7 str. EC4401] gi|189403130|ref|ZP_02793371.2| transcription termination/antitermination factor NusB [Escherichia coli O157:H7 str. EC4486] gi|189404015|ref|ZP_02786626.2| transcription termination/antitermination factor NusB [Escherichia coli O157:H7 str. EC4501] gi|189404842|ref|ZP_02811267.2| transcription termination/antitermination factor NusB [Escherichia coli O157:H7 str. EC869] gi|189405926|ref|ZP_02825303.2| transcription termination/antitermination factor NusB [Escherichia coli O157:H7 str. EC508] gi|191166701|ref|ZP_03028528.1| transcription termination/antitermination factor NusB [Escherichia coli B7A] gi|191173527|ref|ZP_03035054.1| transcription termination/antitermination factor NusB [Escherichia coli F11] gi|193065231|ref|ZP_03046304.1| transcription termination/antitermination factor NusB [Escherichia coli E22] gi|193068719|ref|ZP_03049680.1| transcription termination/antitermination factor NusB [Escherichia coli E110019] gi|194428830|ref|ZP_03061365.1| transcription termination/antitermination factor NusB [Escherichia coli B171] gi|194432551|ref|ZP_03064837.1| transcription termination/antitermination factor NusB [Shigella dysenteriae 1012] gi|194438929|ref|ZP_03071014.1| transcription termination/antitermination factor NusB [Escherichia coli 101-1] gi|195938519|ref|ZP_03083901.1| transcription antitermination protein NusB [Escherichia coli O157:H7 str. EC4024] gi|208809341|ref|ZP_03251678.1| transcription termination/antitermination factor NusB [Escherichia coli O157:H7 str. EC4206] gi|208815911|ref|ZP_03257090.1| transcription termination/antitermination factor NusB [Escherichia coli O157:H7 str. EC4045] gi|208822969|ref|ZP_03263287.1| transcription termination/antitermination factor NusB [Escherichia coli O157:H7 str. EC4042] gi|209396859|ref|YP_002269060.1| transcription termination/antitermination factor NusB [Escherichia coli O157:H7 str. EC4115] gi|209917629|ref|YP_002291713.1| transcription antitermination protein NusB [Escherichia coli SE11] gi|215485497|ref|YP_002327928.1| transcription antitermination protein NusB [Escherichia coli O127:H6 str. E2348/69] gi|217325689|ref|ZP_03441773.1| transcription termination/antitermination factor NusB [Escherichia coli O157:H7 str. TW14588] gi|218552979|ref|YP_002385892.1| transcription antitermination protein NusB [Escherichia coli IAI1] gi|218557325|ref|YP_002390238.1| transcription antitermination protein NusB [Escherichia coli S88] gi|218688279|ref|YP_002396491.1| transcription antitermination protein NusB [Escherichia coli ED1a] gi|218693876|ref|YP_002401543.1| transcription antitermination protein NusB [Escherichia coli 55989] gi|218698675|ref|YP_002406304.1| transcription antitermination protein NusB [Escherichia coli IAI39] gi|218703698|ref|YP_002411217.1| transcription antitermination protein NusB [Escherichia coli UMN026] gi|227884576|ref|ZP_04002381.1| N utilization substance B [Escherichia coli 83972] gi|237707590|ref|ZP_04538071.1| transcription termination [Escherichia sp. 3_2_53FAA] gi|238899704|ref|YP_002925500.1| transcription antitermination protein [Escherichia coli BW2952] gi|253774599|ref|YP_003037430.1| transcription antitermination protein NusB [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|254160482|ref|YP_003043590.1| transcription antitermination protein NusB [Escherichia coli B str. REL606] gi|254791599|ref|YP_003076436.1| transcription antitermination protein NusB [Escherichia coli O157:H7 str. TW14359] gi|256020383|ref|ZP_05434248.1| transcription antitermination protein NusB [Shigella sp. D9] gi|256023967|ref|ZP_05437832.1| transcription antitermination protein NusB [Escherichia sp. 4_1_40B] gi|260842614|ref|YP_003220392.1| transcription antitermination protein NusB [Escherichia coli O103:H2 str. 12009] gi|260853636|ref|YP_003227527.1| transcription antitermination protein NusB [Escherichia coli O26:H11 str. 11368] gi|260866574|ref|YP_003232976.1| transcription antitermination protein NusB [Escherichia coli O111:H- str. 11128] gi|261223895|ref|ZP_05938176.1| transcription antitermination protein [Escherichia coli O157:H7 str. FRIK2000] gi|261256391|ref|ZP_05948924.1| transcription antitermination protein NusB [Escherichia coli O157:H7 str. FRIK966] gi|291281322|ref|YP_003498140.1| N utilization substance protein B-like protein [Escherichia coli O55:H7 str. CB9615] gi|293403535|ref|ZP_06647626.1| N utilization substance protein B [Escherichia coli FVEC1412] gi|293408562|ref|ZP_06652401.1| transcription antitermination factor NusB [Escherichia coli B354] gi|293413670|ref|ZP_06656319.1| transcription antitermination factor NusB [Escherichia coli B185] gi|293418483|ref|ZP_06660918.1| transcription antitermination factor NusB [Escherichia coli B088] gi|297517701|ref|ZP_06936087.1| transcription antitermination protein NusB [Escherichia coli OP50] gi|298379147|ref|ZP_06989028.1| N utilization substance protein B [Escherichia coli FVEC1302] gi|300818260|ref|ZP_07098471.1| transcription antitermination factor NusB [Escherichia coli MS 107-1] gi|300820345|ref|ZP_07100497.1| transcription antitermination factor NusB [Escherichia coli MS 119-7] gi|300900482|ref|ZP_07118649.1| transcription antitermination factor NusB [Escherichia coli MS 198-1] gi|300903319|ref|ZP_07121247.1| transcription antitermination factor NusB [Escherichia coli MS 84-1] gi|300918204|ref|ZP_07134811.1| transcription antitermination factor NusB [Escherichia coli MS 115-1] gi|300924136|ref|ZP_07140128.1| transcription antitermination factor NusB [Escherichia coli MS 182-1] gi|300930289|ref|ZP_07145702.1| transcription antitermination factor NusB [Escherichia coli MS 187-1] gi|300937025|ref|ZP_07151891.1| transcription antitermination factor NusB [Escherichia coli MS 21-1] gi|300947933|ref|ZP_07162081.1| transcription antitermination factor NusB [Escherichia coli MS 116-1] gi|300957981|ref|ZP_07170146.1| transcription antitermination factor NusB [Escherichia coli MS 175-1] gi|300988032|ref|ZP_07178512.1| transcription antitermination factor NusB [Escherichia coli MS 45-1] gi|300997397|ref|ZP_07181737.1| transcription antitermination factor NusB [Escherichia coli MS 200-1] gi|301022595|ref|ZP_07186467.1| transcription antitermination factor NusB [Escherichia coli MS 69-1] gi|301025697|ref|ZP_07189213.1| transcription antitermination factor NusB [Escherichia coli MS 196-1] gi|301049616|ref|ZP_07196567.1| transcription antitermination factor NusB [Escherichia coli MS 185-1] gi|301301564|ref|ZP_07207699.1| transcription antitermination factor NusB [Escherichia coli MS 124-1] gi|301647338|ref|ZP_07247150.1| transcription antitermination factor NusB [Escherichia coli MS 146-1] gi|306813118|ref|ZP_07447311.1| transcription antitermination protein NusB [Escherichia coli NC101] gi|307137059|ref|ZP_07496415.1| transcription antitermination protein NusB [Escherichia coli H736] gi|307312209|ref|ZP_07591845.1| NusB antitermination factor [Escherichia coli W] gi|309787003|ref|ZP_07681615.1| transcription antitermination factor NusB [Shigella dysenteriae 1617] gi|309794859|ref|ZP_07689280.1| transcription antitermination factor NusB [Escherichia coli MS 145-7] gi|312964562|ref|ZP_07778818.1| transcription antitermination factor NusB [Escherichia coli 2362-75] gi|312970511|ref|ZP_07784692.1| transcription antitermination factor NusB [Escherichia coli 1827-70] gi|331640933|ref|ZP_08342068.1| transcription antitermination factor NusB [Escherichia coli H736] gi|331645589|ref|ZP_08346693.1| transcription antitermination factor NusB [Escherichia coli M605] gi|331651350|ref|ZP_08352375.1| transcription antitermination factor NusB [Escherichia coli M718] gi|331656470|ref|ZP_08357432.1| transcription antitermination factor NusB [Escherichia coli TA206] gi|331661793|ref|ZP_08362716.1| transcription antitermination factor NusB [Escherichia coli TA143] gi|331666765|ref|ZP_08367639.1| transcription antitermination factor NusB [Escherichia coli TA271] gi|331671961|ref|ZP_08372757.1| transcription antitermination factor NusB [Escherichia coli TA280] gi|331676083|ref|ZP_08376795.1| transcription antitermination factor NusB [Escherichia coli H591] gi|331681809|ref|ZP_08382442.1| transcription antitermination factor NusB [Escherichia coli H299] gi|332281562|ref|ZP_08393975.1| transcription termination/antitermination factor NusB [Shigella sp. D9] gi|67469828|sp|P0A780|NUSB_ECOLI RecName: Full=N utilization substance protein B; Short=Protein nusB gi|67469829|sp|P0A781|NUSB_ECOL6 RecName: Full=N utilization substance protein B; Short=Protein nusB gi|67469832|sp|P0A782|NUSB_ECO57 RecName: Full=N utilization substance protein B; Short=Protein nusB gi|67469833|sp|P0A783|NUSB_SHIFL RecName: Full=N utilization substance protein B; Short=Protein nusB gi|119390769|sp|Q0TKM5|NUSB_ECOL5 RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|119390770|sp|Q1RFC4|NUSB_ECOUT RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|119390822|sp|Q325I5|NUSB_SHIBS RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|119390823|sp|Q32JH0|NUSB_SHIDS RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|119390824|sp|Q3Z4Z3|NUSB_SHISS RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|122957627|sp|Q0T7H3|NUSB_SHIF8 RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|166918806|sp|A7ZIG9|NUSB_ECO24 RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|166918807|sp|A7ZX68|NUSB_ECOHS RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|189035889|sp|B1J033|NUSB_ECOLC RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|226738899|sp|B7MD74|NUSB_ECO45 RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|226738900|sp|B7NJ81|NUSB_ECO7I RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|226738901|sp|B7M3Q5|NUSB_ECO8A RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|226738902|sp|B7N8W8|NUSB_ECOLU RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|226738903|sp|B1LJG6|NUSB_ECOSM RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|229620059|sp|B1XF04|NUSB_ECODH RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|238055351|sp|B5Z3S0|NUSB_ECO5E RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|238055352|sp|B6HZL7|NUSB_ECOSE RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|238689513|sp|B2U4L9|NUSB_SHIB3 RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|254772637|sp|B7UJN9|NUSB_ECO27 RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|254772638|sp|B7L650|NUSB_ECO55 RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|254772639|sp|B7MQD1|NUSB_ECO81 RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|259514826|sp|C4ZTH3|NUSB_ECOBW RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|9257110|pdb|1EY1|A Chain A, Solution Structure Of Escherichia Coli Nusb gi|12513271|gb|AAG54765.1|AE005221_2 transcription termination; L factor [Escherichia coli O157:H7 str. EDL933] gi|26106820|gb|AAN79005.1|AE016756_188 N utilization substance protein B [Escherichia coli CFT073] gi|146976|gb|AAA24228.1| nusB [Escherichia coli] gi|581148|emb|CAA45737.1| nusB (ssyB) [Escherichia coli K-12] gi|581149|emb|CAA25289.1| unnamed protein product [Escherichia coli] gi|1773100|gb|AAB40172.1| N utilization substance protein B [Escherichia coli] gi|1786618|gb|AAC73519.1| transcription antitermination protein [Escherichia coli str. K-12 substr. MG1655] gi|13359926|dbj|BAB33892.1| transcription termination factor NusB [Escherichia coli O157:H7 str. Sakai] gi|15027052|emb|CAC44764.1| N utilisation substance protein B [Expression vector pNCO113-nusB/nusE] gi|24050582|gb|AAN42011.1| transcription termination factor NusB [Shigella flexneri 2a str. 301] gi|30040155|gb|AAP15888.1| transcription termination factor NusB [Shigella flexneri 2a str. 2457T] gi|73854462|gb|AAZ87169.1| transcription termination; L factor [Shigella sonnei Ss046] gi|81239827|gb|ABB60537.1| NusB [Shigella dysenteriae Sd197] gi|81244315|gb|ABB65023.1| NusB [Shigella boydii Sb227] gi|85674556|dbj|BAE76196.1| transcription antitermination protein [Escherichia coli str. K12 substr. W3110] gi|91071059|gb|ABE05940.1| FJECB transcription termination; L factor [Escherichia coli UTI89] gi|110342269|gb|ABG68506.1| N utilization substance protein B [Escherichia coli 536] gi|110613986|gb|ABF02653.1| transcription termination L factor [Shigella flexneri 5 str. 8401] gi|157065617|gb|ABV04872.1| transcription termination/antitermination factor NusB [Escherichia coli HS] gi|157076913|gb|ABV16621.1| transcription termination/antitermination factor NusB [Escherichia coli E24377A] gi|169756140|gb|ACA78839.1| NusB antitermination factor [Escherichia coli ATCC 8739] gi|169887837|gb|ACB01544.1| transcription antitermination protein [Escherichia coli str. K-12 substr. DH10B] gi|170123208|gb|EDS92139.1| transcription termination/antitermination factor NusB [Escherichia albertii TW07627] gi|170518873|gb|ACB17051.1| transcription termination/antitermination factor NusB [Escherichia coli SMS-3-5] gi|187427979|gb|ACD07253.1| transcription termination/antitermination factor NusB [Shigella boydii CDC 3083-94] gi|187768302|gb|EDU32146.1| transcription termination/antitermination factor NusB [Escherichia coli O157:H7 str. EC4196] gi|188015850|gb|EDU53972.1| transcription termination/antitermination factor NusB [Escherichia coli O157:H7 str. EC4113] gi|188488353|gb|EDU63456.1| transcription termination/antitermination factor NusB [Escherichia coli 53638] gi|188999358|gb|EDU68344.1| transcription termination/antitermination factor NusB [Escherichia coli O157:H7 str. EC4076] gi|189356022|gb|EDU74441.1| transcription termination/antitermination factor NusB [Escherichia coli O157:H7 str. EC4401] gi|189362518|gb|EDU80937.1| transcription termination/antitermination factor NusB [Escherichia coli O157:H7 str. EC4486] gi|189368081|gb|EDU86497.1| transcription termination/antitermination factor NusB [Escherichia coli O157:H7 str. EC4501] gi|189373730|gb|EDU92146.1| transcription termination/antitermination factor NusB [Escherichia coli O157:H7 str. EC869] gi|189377377|gb|EDU95793.1| transcription termination/antitermination factor NusB [Escherichia coli O157:H7 str. EC508] gi|190903212|gb|EDV62934.1| transcription termination/antitermination factor NusB [Escherichia coli B7A] gi|190906236|gb|EDV65848.1| transcription termination/antitermination factor NusB [Escherichia coli F11] gi|192927205|gb|EDV81826.1| transcription termination/antitermination factor NusB [Escherichia coli E22] gi|192958082|gb|EDV88524.1| transcription termination/antitermination factor NusB [Escherichia coli E110019] gi|194413133|gb|EDX29420.1| transcription termination/antitermination factor NusB [Escherichia coli B171] gi|194419112|gb|EDX35195.1| transcription termination/antitermination factor NusB [Shigella dysenteriae 1012] gi|194422223|gb|EDX38225.1| transcription termination/antitermination factor NusB [Escherichia coli 101-1] gi|208729142|gb|EDZ78743.1| transcription termination/antitermination factor NusB [Escherichia coli O157:H7 str. EC4206] gi|208732559|gb|EDZ81247.1| transcription termination/antitermination factor NusB [Escherichia coli O157:H7 str. EC4045] gi|208737162|gb|EDZ84846.1| transcription termination/antitermination factor NusB [Escherichia coli O157:H7 str. EC4042] gi|209158259|gb|ACI35692.1| transcription termination/antitermination factor NusB [Escherichia coli O157:H7 str. EC4115] gi|209744064|gb|ACI70339.1| transcription termination factor NusB [Escherichia coli] gi|209744066|gb|ACI70340.1| transcription termination factor NusB [Escherichia coli] gi|209744068|gb|ACI70341.1| transcription termination factor NusB [Escherichia coli] gi|209744070|gb|ACI70342.1| transcription termination factor NusB [Escherichia coli] gi|209744072|gb|ACI70343.1| transcription termination factor NusB [Escherichia coli] gi|209910888|dbj|BAG75962.1| N utilization substance protein B [Escherichia coli SE11] gi|215263569|emb|CAS07899.1| transcription antitermination protein NusB [Escherichia coli O127:H6 str. E2348/69] gi|217321910|gb|EEC30334.1| transcription termination/antitermination factor NusB [Escherichia coli O157:H7 str. TW14588] gi|218350608|emb|CAU96300.1| transcription antitermination protein [Escherichia coli 55989] gi|218359747|emb|CAQ97288.1| transcription antitermination protein [Escherichia coli IAI1] gi|218364094|emb|CAR01759.1| transcription antitermination protein [Escherichia coli S88] gi|218368661|emb|CAR16400.1| transcription antitermination protein [Escherichia coli IAI39] gi|218425843|emb|CAR06649.1| transcription antitermination protein [Escherichia coli ED1a] gi|218430795|emb|CAR11669.1| transcription antitermination protein [Escherichia coli UMN026] gi|222032211|emb|CAP74950.1| N utilization substance protein B [Escherichia coli LF82] gi|226898800|gb|EEH85059.1| transcription termination [Escherichia sp. 3_2_53FAA] gi|227838662|gb|EEJ49128.1| N utilization substance B [Escherichia coli 83972] gi|238863676|gb|ACR65674.1| transcription antitermination protein [Escherichia coli BW2952] gi|242376194|emb|CAQ30885.1| transcription antitermination protein NusB, subunit of NusB-NusE complex [Escherichia coli BL21(DE3)] gi|253325643|gb|ACT30245.1| NusB antitermination factor [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|253972383|gb|ACT38054.1| transcription antitermination protein NusB [Escherichia coli B str. REL606] gi|253976593|gb|ACT42263.1| transcription antitermination protein NusB [Escherichia coli BL21(DE3)] gi|254590999|gb|ACT70360.1| transcription antitermination protein [Escherichia coli O157:H7 str. TW14359] gi|257752285|dbj|BAI23787.1| transcription antitermination protein NusB [Escherichia coli O26:H11 str. 11368] gi|257757761|dbj|BAI29258.1| transcription antitermination protein NusB [Escherichia coli O103:H2 str. 12009] gi|257762930|dbj|BAI34425.1| transcription antitermination protein NusB [Escherichia coli O111:H- str. 11128] gi|260450397|gb|ACX40819.1| NusB antitermination factor [Escherichia coli DH1] gi|281177586|dbj|BAI53916.1| N utilization substance protein B [Escherichia coli SE15] gi|281599748|gb|ADA72732.1| N utilization substance protein B [Shigella flexneri 2002017] gi|284920225|emb|CBG33284.1| N utilization substance protein B [Escherichia coli 042] gi|290761195|gb|ADD55156.1| N utilization substance protein B-like protein [Escherichia coli O55:H7 str. CB9615] gi|291325011|gb|EFE64426.1| transcription antitermination factor NusB [Escherichia coli B088] gi|291429388|gb|EFF02408.1| N utilization substance protein B [Escherichia coli FVEC1412] gi|291433728|gb|EFF06701.1| transcription antitermination factor NusB [Escherichia coli B185] gi|291471740|gb|EFF14223.1| transcription antitermination factor NusB [Escherichia coli B354] gi|294491145|gb|ADE89901.1| transcription termination/antitermination factor NusB [Escherichia coli IHE3034] gi|298280260|gb|EFI21764.1| N utilization substance protein B [Escherichia coli FVEC1302] gi|299880009|gb|EFI88220.1| transcription antitermination factor NusB [Escherichia coli MS 196-1] gi|300298609|gb|EFJ54994.1| transcription antitermination factor NusB [Escherichia coli MS 185-1] gi|300304216|gb|EFJ58736.1| transcription antitermination factor NusB [Escherichia coli MS 200-1] gi|300315317|gb|EFJ65101.1| transcription antitermination factor NusB [Escherichia coli MS 175-1] gi|300355963|gb|EFJ71833.1| transcription antitermination factor NusB [Escherichia coli MS 198-1] gi|300397476|gb|EFJ81014.1| transcription antitermination factor NusB [Escherichia coli MS 69-1] gi|300404614|gb|EFJ88152.1| transcription antitermination factor NusB [Escherichia coli MS 84-1] gi|300407584|gb|EFJ91122.1| transcription antitermination factor NusB [Escherichia coli MS 45-1] gi|300414655|gb|EFJ97965.1| transcription antitermination factor NusB [Escherichia coli MS 115-1] gi|300419589|gb|EFK02900.1| transcription antitermination factor NusB [Escherichia coli MS 182-1] gi|300452533|gb|EFK16153.1| transcription antitermination factor NusB [Escherichia coli MS 116-1] gi|300457856|gb|EFK21349.1| transcription antitermination factor NusB [Escherichia coli MS 21-1] gi|300461861|gb|EFK25354.1| transcription antitermination factor NusB [Escherichia coli MS 187-1] gi|300527130|gb|EFK48199.1| transcription antitermination factor NusB [Escherichia coli MS 119-7] gi|300529151|gb|EFK50213.1| transcription antitermination factor NusB [Escherichia coli MS 107-1] gi|300843061|gb|EFK70821.1| transcription antitermination factor NusB [Escherichia coli MS 124-1] gi|301074483|gb|EFK89289.1| transcription antitermination factor NusB [Escherichia coli MS 146-1] gi|305853881|gb|EFM54320.1| transcription antitermination protein NusB [Escherichia coli NC101] gi|306907711|gb|EFN38213.1| NusB antitermination factor [Escherichia coli W] gi|307552321|gb|ADN45096.1| N utilization substance protein B [Escherichia coli ABU 83972] gi|307628115|gb|ADN72419.1| transcription antitermination protein NusB [Escherichia coli UM146] gi|308121512|gb|EFO58774.1| transcription antitermination factor NusB [Escherichia coli MS 145-7] gi|308924581|gb|EFP70076.1| transcription antitermination factor NusB [Shigella dysenteriae 1617] gi|309700678|emb|CBI99974.1| N utilization substance protein B [Escherichia coli ETEC H10407] gi|310337160|gb|EFQ02298.1| transcription antitermination factor NusB [Escherichia coli 1827-70] gi|312290796|gb|EFR18673.1| transcription antitermination factor NusB [Escherichia coli 2362-75] gi|312944993|gb|ADR25820.1| transcription antitermination protein NusB [Escherichia coli O83:H1 str. NRG 857C] gi|313646967|gb|EFS11424.1| transcription antitermination factor NusB [Shigella flexneri 2a str. 2457T] gi|315059693|gb|ADT74020.1| transcription antitermination protein [Escherichia coli W] gi|315135098|dbj|BAJ42257.1| N utilization substance protein B-like protein [Escherichia coli DH1] gi|315256241|gb|EFU36209.1| transcription antitermination factor NusB [Escherichia coli MS 85-1] gi|315289869|gb|EFU49259.1| transcription antitermination factor NusB [Escherichia coli MS 110-3] gi|315294205|gb|EFU53556.1| transcription antitermination factor NusB [Escherichia coli MS 153-1] gi|315299582|gb|EFU58830.1| transcription antitermination factor NusB [Escherichia coli MS 16-3] gi|315616644|gb|EFU97261.1| transcription antitermination factor NusB [Escherichia coli 3431] gi|320173766|gb|EFW48949.1| Transcription termination protein NusB [Shigella dysenteriae CDC 74-1112] gi|320181602|gb|EFW56517.1| Transcription termination protein NusB [Shigella boydii ATCC 9905] gi|320186045|gb|EFW60790.1| Transcription termination protein NusB [Shigella flexneri CDC 796-83] gi|320192829|gb|EFW67469.1| Transcription termination protein NusB [Escherichia coli O157:H7 str. EC1212] gi|320197146|gb|EFW71763.1| Transcription termination protein NusB [Escherichia coli WV_060327] gi|320201657|gb|EFW76233.1| Transcription termination protein NusB [Escherichia coli EC4100B] gi|320638408|gb|EFX08122.1| transcription antitermination protein NusB [Escherichia coli O157:H7 str. G5101] gi|320643788|gb|EFX12911.1| transcription antitermination protein NusB [Escherichia coli O157:H- str. 493-89] gi|320649139|gb|EFX17717.1| transcription antitermination protein NusB [Escherichia coli O157:H- str. H 2687] gi|320656032|gb|EFX23948.1| transcription antitermination protein NusB [Escherichia coli O55:H7 str. 3256-97 TW 07815] gi|320661182|gb|EFX28613.1| transcription antitermination protein NusB [Escherichia coli O55:H7 str. USDA 5905] gi|320665158|gb|EFX32251.1| transcription antitermination protein NusB [Escherichia coli O157:H7 str. LSU-61] gi|323152116|gb|EFZ38409.1| transcription antitermination factor NusB [Escherichia coli EPECa14] gi|323160477|gb|EFZ46425.1| transcription antitermination factor NusB [Escherichia coli E128010] gi|323164207|gb|EFZ50014.1| transcription antitermination factor NusB [Shigella sonnei 53G] gi|323170498|gb|EFZ56148.1| transcription antitermination factor NusB [Escherichia coli LT-68] gi|323178321|gb|EFZ63899.1| transcription antitermination factor NusB [Escherichia coli 1180] gi|323184758|gb|EFZ70129.1| transcription antitermination factor NusB [Escherichia coli 1357] gi|323191334|gb|EFZ76597.1| transcription antitermination factor NusB [Escherichia coli RN587/1] gi|323379741|gb|ADX52009.1| NusB antitermination factor [Escherichia coli KO11] gi|323938601|gb|EGB34850.1| transcription antitermination protein NusB [Escherichia coli E1520] gi|323943222|gb|EGB39378.1| transcription antitermination protein NusB [Escherichia coli E482] gi|323945317|gb|EGB41373.1| transcription antitermination protein NusB [Escherichia coli H120] gi|323952972|gb|EGB48840.1| transcription antitermination protein NusB [Escherichia coli H252] gi|323958609|gb|EGB54312.1| transcription antitermination protein NusB [Escherichia coli H263] gi|323963402|gb|EGB58964.1| transcription antitermination protein NusB [Escherichia coli H489] gi|323965098|gb|EGB60557.1| transcription antitermination protein NusB [Escherichia coli M863] gi|323972266|gb|EGB67476.1| transcription antitermination protein NusB [Escherichia coli TA007] gi|323976103|gb|EGB71196.1| transcription antitermination protein NusB [Escherichia coli TW10509] gi|324010093|gb|EGB79312.1| transcription antitermination factor NusB [Escherichia coli MS 57-2] gi|324010676|gb|EGB79895.1| transcription antitermination factor NusB [Escherichia coli MS 60-1] gi|324016678|gb|EGB85897.1| transcription antitermination factor NusB [Escherichia coli MS 117-3] gi|324116900|gb|EGC10813.1| transcription antitermination protein NusB [Escherichia coli E1167] gi|326341177|gb|EGD64969.1| Transcription termination protein NusB [Escherichia coli O157:H7 str. 1044] gi|326346048|gb|EGD69787.1| Transcription termination protein NusB [Escherichia coli O157:H7 str. 1125] gi|327254737|gb|EGE66353.1| transcription antitermination factor NusB [Escherichia coli STEC_7v] gi|330910210|gb|EGH38720.1| transcription termination protein NusB [Escherichia coli AA86] gi|331037731|gb|EGI09951.1| transcription antitermination factor NusB [Escherichia coli H736] gi|331045751|gb|EGI17877.1| transcription antitermination factor NusB [Escherichia coli M605] gi|331051091|gb|EGI23143.1| transcription antitermination factor NusB [Escherichia coli M718] gi|331054718|gb|EGI26727.1| transcription antitermination factor NusB [Escherichia coli TA206] gi|331060215|gb|EGI32179.1| transcription antitermination factor NusB [Escherichia coli TA143] gi|331065989|gb|EGI37873.1| transcription antitermination factor NusB [Escherichia coli TA271] gi|331070950|gb|EGI42309.1| transcription antitermination factor NusB [Escherichia coli TA280] gi|331076141|gb|EGI47423.1| transcription antitermination factor NusB [Escherichia coli H591] gi|331081011|gb|EGI52176.1| transcription antitermination factor NusB [Escherichia coli H299] gi|332086022|gb|EGI91186.1| transcription antitermination factor NusB [Shigella dysenteriae 155-74] gi|332094566|gb|EGI99612.1| transcription antitermination factor NusB [Shigella boydii 5216-82] gi|332098578|gb|EGJ03544.1| transcription antitermination factor NusB [Shigella boydii 3594-74] gi|332103914|gb|EGJ07260.1| transcription termination/antitermination factor NusB [Shigella sp. D9] gi|332341779|gb|AEE55113.1| transcription antitermination factor protein NusB [Escherichia coli UMNK88] gi|332760696|gb|EGJ90984.1| transcription antitermination factor NusB [Shigella flexneri 4343-70] gi|332761743|gb|EGJ92022.1| transcription antitermination factor NusB [Shigella flexneri 2747-71] gi|332764293|gb|EGJ94529.1| transcription antitermination factor NusB [Shigella flexneri K-671] gi|332768521|gb|EGJ98704.1| transcription antitermination factor NusB [Shigella flexneri 2930-71] gi|333007978|gb|EGK27454.1| transcription antitermination factor NusB [Shigella flexneri K-218] gi|333008611|gb|EGK28079.1| transcription antitermination factor NusB [Shigella flexneri VA-6] gi|333010858|gb|EGK30284.1| transcription antitermination factor NusB [Shigella flexneri K-272] gi|333021357|gb|EGK40610.1| transcription antitermination factor NusB [Shigella flexneri K-227] gi|333022014|gb|EGK41259.1| transcription antitermination factor NusB [Shigella flexneri K-304] gi|1096319|prf||2111328A NusB protein Length = 139 Score = 53.5 bits (127), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 41/132 (31%), Positives = 65/132 (49%), Gaps = 13/132 (9%) Query: 23 AVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQH 82 AVQALY + ++ Y+F A E DV+ V D+ +FR ++ GV + Sbjct: 13 AVQALYSWQLSQNDIADV-----EYQFLA--EQDVKDV----DVLYFRELLAGVATNTAY 61 Query: 83 IDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDE 142 +D L+ L+ L + ++LR + EL + VP +V I+E + +A F D Sbjct: 62 LDGLMKPYLSR--LLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDS 119 Query: 143 PKFINAVLDKVS 154 KF+N VLDK + Sbjct: 120 HKFVNGVLDKAA 131 >gi|167758087|ref|ZP_02430214.1| hypothetical protein CLOSCI_00425 [Clostridium scindens ATCC 35704] gi|167663984|gb|EDS08114.1| hypothetical protein CLOSCI_00425 [Clostridium scindens ATCC 35704] Length = 132 Score = 53.5 bits (127), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 30/89 (33%), Positives = 47/89 (52%), Gaps = 1/89 (1%) Query: 65 DLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVE 124 DL++ R + + + + ID LI+ T +W SR++ + +ILR V E+ VP Sbjct: 43 DLDYIREKVQKIASKVEEIDALINEHTT-RWKTSRMNKVDLTILRLAVYEMRWDEDVPTG 101 Query: 125 VIISEYVCIAHDFFYGDEPKFINAVLDKV 153 V I E V +A + D P F+N VL K+ Sbjct: 102 VAIDEAVELAKKYSSEDGPSFVNGVLAKL 130 >gi|228941343|ref|ZP_04103895.1| N utilization substance protein B [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228954468|ref|ZP_04116493.1| N utilization substance protein B [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228960450|ref|ZP_04122101.1| N utilization substance protein B [Bacillus thuringiensis serovar pakistani str. T13001] gi|228980868|ref|ZP_04141172.1| N utilization substance protein B [Bacillus thuringiensis Bt407] gi|229047878|ref|ZP_04193454.1| N utilization substance protein B [Bacillus cereus AH676] gi|229071689|ref|ZP_04204905.1| N utilization substance protein B [Bacillus cereus F65185] gi|229081441|ref|ZP_04213941.1| N utilization substance protein B [Bacillus cereus Rock4-2] gi|229111657|ref|ZP_04241207.1| N utilization substance protein B [Bacillus cereus Rock1-15] gi|229129462|ref|ZP_04258433.1| N utilization substance protein B [Bacillus cereus BDRD-Cer4] gi|229146757|ref|ZP_04275122.1| N utilization substance protein B [Bacillus cereus BDRD-ST24] gi|229152384|ref|ZP_04280576.1| N utilization substance protein B [Bacillus cereus m1550] gi|229163128|ref|ZP_04291084.1| N utilization substance protein B [Bacillus cereus R309803] gi|229180462|ref|ZP_04307804.1| N utilization substance protein B [Bacillus cereus 172560W] gi|229192394|ref|ZP_04319357.1| N utilization substance protein B [Bacillus cereus ATCC 10876] gi|228590971|gb|EEK48827.1| N utilization substance protein B [Bacillus cereus ATCC 10876] gi|228602886|gb|EEK60365.1| N utilization substance protein B [Bacillus cereus 172560W] gi|228620534|gb|EEK77404.1| N utilization substance protein B [Bacillus cereus R309803] gi|228630992|gb|EEK87629.1| N utilization substance protein B [Bacillus cereus m1550] gi|228636585|gb|EEK93050.1| N utilization substance protein B [Bacillus cereus BDRD-ST24] gi|228654067|gb|EEL09934.1| N utilization substance protein B [Bacillus cereus BDRD-Cer4] gi|228671792|gb|EEL27086.1| N utilization substance protein B [Bacillus cereus Rock1-15] gi|228701856|gb|EEL54342.1| N utilization substance protein B [Bacillus cereus Rock4-2] gi|228711420|gb|EEL63379.1| N utilization substance protein B [Bacillus cereus F65185] gi|228723335|gb|EEL74704.1| N utilization substance protein B [Bacillus cereus AH676] gi|228778804|gb|EEM27067.1| N utilization substance protein B [Bacillus thuringiensis Bt407] gi|228799214|gb|EEM46180.1| N utilization substance protein B [Bacillus thuringiensis serovar pakistani str. T13001] gi|228805125|gb|EEM51719.1| N utilization substance protein B [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228818269|gb|EEM64342.1| N utilization substance protein B [Bacillus thuringiensis serovar berliner ATCC 10792] Length = 120 Score = 53.5 bits (127), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 43/132 (32%), Positives = 63/132 (47%), Gaps = 18/132 (13%) Query: 24 VQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHI 83 +QALYQ+DI G E E +T + E E+ ++ G ++ K+ I Sbjct: 1 MQALYQMDITG--------ELEPKVAVENTLDEGEETN-----EFLESLVVGFVENKEAI 47 Query: 84 DLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEP 143 D I L +KW R+ ++ SILR V E+ +P V I+E + IA F GDE Sbjct: 48 DEAIRQNL-KKWKLERISIVDRSILRVAVYEMKYMEEIPHNVTINEAIEIAKTF--GDEE 104 Query: 144 --KFINAVLDKV 153 +FIN VL + Sbjct: 105 SRRFINGVLSNI 116 >gi|195977499|ref|YP_002122743.1| transcription antitermination protein NusB [Streptococcus equi subsp. zooepidemicus MGCS10565] gi|195974204|gb|ACG61730.1| N utilization substance protein B-like NusB [Streptococcus equi subsp. zooepidemicus MGCS10565] Length = 139 Score = 53.5 bits (127), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 37/140 (26%), Positives = 66/140 (47%), Gaps = 6/140 (4%) Query: 20 RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79 R A QAL+ +++ G +++ Y + + D + L V + +++GVMD Sbjct: 2 RERAFQALFTMEMGGDF---LLASQFAYDYDKEVADDKQPSELPV---FLLNLVNGVMDH 55 Query: 80 KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139 K +D +I L WS RL ++ ++LR G+ E+ P V ++E + IA + Sbjct: 56 KAELDEVIKKNLKAGWSIERLTVVDKTMLRLGLFEMTLFEETPDRVALNEIIEIAKKYSD 115 Query: 140 GDEPKFINAVLDKVSRKEEI 159 KFIN +L + E + Sbjct: 116 DTSAKFINGLLSQFVSDESV 135 >gi|289450308|ref|YP_003475512.1| transcription antitermination factor NusB [Clostridiales genomosp. BVAB3 str. UPII9-5] gi|289184855|gb|ADC91280.1| transcription antitermination factor NusB [Clostridiales genomosp. BVAB3 str. UPII9-5] Length = 151 Score = 53.5 bits (127), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 43/145 (29%), Positives = 72/145 (49%), Gaps = 11/145 (7%) Query: 15 RRGIARLAAVQALYQIDIIGCSTTEIISEYETY-RFCADTELDVESVYLHVDLEWFRVII 73 +R AR A + LYQI + T +I ++ E + R C D E + D+ + ++ Sbjct: 2 KRREAREQAFKFLYQIQV---QTDDIPAQREYFLRSCRD-----EFGFEDADISYITGVV 53 Query: 74 HGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCI 133 GV+ D IS+CL +KW+ RL + +ILR + E I+ V +I +E V + Sbjct: 54 DGVIKETAEFDRQISTCL-KKWTVDRLPCVDLAILRLALYE-IKYEHVAFSIIANEAVLL 111 Query: 134 AHDFFYGDEPKFINAVLDKVSRKEE 158 A + + +IN +L K+ KE+ Sbjct: 112 AKKYSTEESRSYINGILGKLMPKED 136 >gi|239978405|ref|ZP_04700929.1| transcription antitermination protein NusB [Streptomyces albus J1074] gi|291450301|ref|ZP_06589691.1| transcription antitermination protein NusB [Streptomyces albus J1074] gi|291353250|gb|EFE80152.1| transcription antitermination protein NusB [Streptomyces albus J1074] Length = 142 Score = 53.5 bits (127), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 40/145 (27%), Positives = 72/145 (49%), Gaps = 12/145 (8%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 R AR A Q L++ D +++++ + +DT S Y +E ++ G Sbjct: 4 RNTARKRAFQILFEADQRSTDVLTVLADWIRH-ARSDTRQPPVSEYT---ME----LVEG 55 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135 + ++ ID LI+ + W+ R+ ++ +ILR G ELI + P V++ E V +A Sbjct: 56 YAEHERRIDELIAQYAVD-WTLDRMPVVDRNILRLGAYELIWVDTTPDAVVLDEAVQLAK 114 Query: 136 DFFYGDEPKFINAVLDKVSRKEEIK 160 +F D P F+N +L +R +E+K Sbjct: 115 EFSTDDSPAFVNGLL---ARFKELK 136 >gi|207092122|ref|ZP_03239909.1| transcription antitermination protein NusB [Helicobacter pylori HPKX_438_AG0C1] gi|317011858|gb|ADU82466.1| transcription antitermination protein NusB [Helicobacter pylori Lithuania75] Length = 138 Score = 53.5 bits (127), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 43/141 (30%), Positives = 68/141 (48%), Gaps = 13/141 (9%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 R AR A V+ LY + S E + A + L+ + + + L + + +G Sbjct: 4 RTQARGAVVELLYAFE----------SGNEEIKKIASSMLEEKKIK-NNQLAFALSLFNG 52 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135 V++R ID LI L + W F RL + +ILR G E I +II+E + + Sbjct: 53 VLERINEIDALIEPHLKD-WDFKRLGSMEKAILRLGAYE-IGFTPTQNPIIINECIELGK 110 Query: 136 DFFYGDEPKFINAVLDKVSRK 156 + + PKF+NA+LD +SRK Sbjct: 111 LYAEPNTPKFLNAILDSLSRK 131 >gi|238787982|ref|ZP_04631778.1| N utilization substance protein B [Yersinia frederiksenii ATCC 33641] gi|238723930|gb|EEQ15574.1| N utilization substance protein B [Yersinia frederiksenii ATCC 33641] Length = 138 Score = 53.5 bits (127), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 42/134 (31%), Positives = 65/134 (48%), Gaps = 17/134 (12%) Query: 23 AVQALYQIDIIGCSTTEIISEYETYRFCADTELDV--ESVYLHVDLEWFRVIIHGVMDRK 80 AVQALY + S +I AD EL E VD+ +FR ++ GV Sbjct: 13 AVQALYSWQL---SKNDI----------ADVELQFLSEQDVKDVDIAYFRELLSGVAVNA 59 Query: 81 QHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYG 140 +D L++ L+ + L + ++LR + EL + VP +V I+E + +A F Sbjct: 60 ASLDALMAPVLSRQ--LEELGQVERAVLRIALFELSKRDDVPYKVAINEAIELAKTFGAE 117 Query: 141 DEPKFINAVLDKVS 154 D KF+N VLDK++ Sbjct: 118 DSHKFVNGVLDKIA 131 >gi|225023290|ref|ZP_03712482.1| hypothetical protein EIKCOROL_00142 [Eikenella corrodens ATCC 23834] gi|224943935|gb|EEG25144.1| hypothetical protein EIKCOROL_00142 [Eikenella corrodens ATCC 23834] Length = 145 Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 45/158 (28%), Positives = 67/158 (42%), Gaps = 18/158 (11%) Query: 10 LKLSHR--RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLE 67 +K +R R AR AVQALYQ + E+ + A D E Sbjct: 1 MKPKNRTPRRRAREFAVQALYQAALNQLPDAEVAKNIRENEYFA-----------KADNE 49 Query: 68 WFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVII 127 F I GV +++ + +I L L I C++L A EL + P VII Sbjct: 50 LFTAIFFGVQAKRRELMQIIRPLLDRDEK--DLSPIECAVLLAAAFELRDMPETPYPVII 107 Query: 128 SEYVCIAHDFFYGDEPKFINAVLDKVS---RKEEIKRS 162 +E + + F D KF+N +LDK++ R + KR+ Sbjct: 108 NEAIEVTKTFGGIDGHKFVNGILDKLAAELRPNDPKRA 145 >gi|172040644|ref|YP_001800358.1| transcription antitermination protein NusB [Corynebacterium urealyticum DSM 7109] gi|171851948|emb|CAQ04924.1| N utilization substance protein B [Corynebacterium urealyticum DSM 7109] Length = 248 Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 39/142 (27%), Positives = 65/142 (45%), Gaps = 10/142 (7%) Query: 15 RRGI---ARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71 RRG AR AV L++ + +I+ E D E ++ + E+ Sbjct: 38 RRGARYKARRRAVDILFEAEFRDIDPVDIMEER--AELAKDQENQIKPI-----PEYTSQ 90 Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131 I+ GV ID I+ LT W+ R+ + +++R EL+ VP V +SE + Sbjct: 91 IVPGVASNLDAIDDAIAVHLTSDWTLDRIPAVDRAVMRVAAWELMFNADVPHRVALSEGI 150 Query: 132 CIAHDFFYGDEPKFINAVLDKV 153 +A ++ + P ++NAVLD V Sbjct: 151 ELASEYSHVKAPDYVNAVLDGV 172 >gi|290579819|ref|YP_003484211.1| putative transcription termination factor [Streptococcus mutans NN2025] gi|254996718|dbj|BAH87319.1| putative transcription termination factor [Streptococcus mutans NN2025] Length = 147 Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 45/148 (30%), Positives = 68/148 (45%), Gaps = 18/148 (12%) Query: 5 DNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHV 64 D+++DL R A QAL+ ++ G + T Y TY + E ++ L Sbjct: 12 DSRRDL---------RERAFQALFSLEFGGDNLTAARFAY-TYDKNEEEEAELPLFLL-- 59 Query: 65 DLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVE 124 +I GV D ++ ID IS L W+ SRL +I S+LR G+ E+ P Sbjct: 60 ------TLIQGVYDCRREIDKNISIHLKSGWTLSRLTLIDKSLLRLGLYEIKYHKETPER 113 Query: 125 VIISEYVCIAHDFFYGDEPKFINAVLDK 152 V ++E + IA + KFIN VL + Sbjct: 114 VALNEIIEIAKKYSDEKSSKFINGVLSQ 141 >gi|220702382|pdb|3D3B|A Chain A, Structural And Functional Analysis Of The E. Coli Nusb-S10 Transcription Antitermination Complex. gi|220702384|pdb|3D3C|A Chain A, Structural And Functional Analysis Of The E. Coli Nusb-S10 Transcription Antitermination Complex. gi|220702386|pdb|3D3C|B Chain B, Structural And Functional Analysis Of The E. Coli Nusb-S10 Transcription Antitermination Complex. gi|220702388|pdb|3D3C|C Chain C, Structural And Functional Analysis Of The E. Coli Nusb-S10 Transcription Antitermination Complex Length = 141 Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 41/132 (31%), Positives = 65/132 (49%), Gaps = 13/132 (9%) Query: 23 AVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQH 82 AVQALY + ++ Y+F A E DV+ V D+ +FR ++ GV + Sbjct: 15 AVQALYSWQLSQNDIADV-----EYQFLA--EQDVKDV----DVLYFRELLAGVATNTAY 63 Query: 83 IDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDE 142 +D L+ L+ L + ++LR + EL + VP +V I+E + +A F D Sbjct: 64 LDGLMKPYLSR--LLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDS 121 Query: 143 PKFINAVLDKVS 154 KF+N VLDK + Sbjct: 122 HKFVNGVLDKAA 133 >gi|24380206|ref|NP_722161.1| transcription antitermination protein NusB [Streptococcus mutans UA159] gi|32171640|sp|Q8DSE9|NUSB_STRMU RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|24378212|gb|AAN59467.1|AE015011_6 putative transcription termination factor [Streptococcus mutans UA159] Length = 142 Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 45/148 (30%), Positives = 68/148 (45%), Gaps = 18/148 (12%) Query: 5 DNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHV 64 D+++DL R A QAL+ ++ G + T Y TY + E ++ L Sbjct: 7 DSRRDL---------RERAFQALFSLEFGGDNLTAARFAY-TYDKNEEEEAELPLFLL-- 54 Query: 65 DLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVE 124 +I GV D ++ ID IS L W+ SRL +I S+LR G+ E+ P Sbjct: 55 ------TLIQGVSDCRREIDKNISIHLKSGWTLSRLTLIDKSLLRLGLYEIKYHKETPER 108 Query: 125 VIISEYVCIAHDFFYGDEPKFINAVLDK 152 V ++E + IA + KFIN VL + Sbjct: 109 VALNEIIEIAKKYSDEKSSKFINGVLSQ 136 >gi|300721781|ref|YP_003711059.1| transcription termination; L factor [Xenorhabdus nematophila ATCC 19061] gi|297628276|emb|CBJ88837.1| transcription termination; L factor [Xenorhabdus nematophila ATCC 19061] Length = 138 Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 42/139 (30%), Positives = 65/139 (46%), Gaps = 13/139 (9%) Query: 23 AVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQH 82 AVQA+Y + S +I E+ + E DV V D+ +FR ++ GV Sbjct: 13 AVQAIYSWQLSNNSIADIELEFLS-------EQDVTGV----DITYFRELLSGVAVNATK 61 Query: 83 IDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDE 142 +D L++ L+ + L + +ILR + EL VP +V I+E + +A F D Sbjct: 62 LDALMAPYLSRQ--LEELGQVEKAILRVAMFELSFRDDVPYKVAINEGIELAKTFGAEDS 119 Query: 143 PKFINAVLDKVSRKEEIKR 161 KF+N VLDK K+ Sbjct: 120 HKFVNGVLDKAGPAARRKK 138 >gi|262283503|ref|ZP_06061269.1| transcription antitermination protein NusB [Streptococcus sp. 2_1_36FAA] gi|262260994|gb|EEY79694.1| transcription antitermination protein NusB [Streptococcus sp. 2_1_36FAA] Length = 141 Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 28/86 (32%), Positives = 46/86 (53%) Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131 +++GVM K +D I+ L W+ RL ++ +ILR G+ EL+E P V ++E + Sbjct: 56 LVNGVMQSKSVLDDKITQYLKAGWTLDRLTLVEKNILRLGLYELLEYDETPQLVAVNEAI 115 Query: 132 CIAHDFFYGDEPKFINAVLDKVSRKE 157 +A F KFIN +L + +E Sbjct: 116 ELAKKFSDEKSSKFINGILSQFVTEE 141 >gi|162455551|ref|YP_001617918.1| N utilization substance protein B [Sorangium cellulosum 'So ce 56'] gi|189035908|sp|A9ET18|NUSB_SORC5 RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|161166133|emb|CAN97438.1| N utilization substance protein B [Sorangium cellulosum 'So ce 56'] Length = 140 Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 37/139 (26%), Positives = 63/139 (45%), Gaps = 12/139 (8%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 R R AA+Q L+ ++ G S +++ F +T D E + D ++ G Sbjct: 4 RSTGREAALQMLFAVEAGGSSAPRVVAT-----FWRETPGDPEG-RAYAD-----EVVVG 52 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135 V + +D I T W R+ + ++LR G EL+ VP VI+ E V +A Sbjct: 53 VAEDLAAVDEAIRKAST-NWRLERMARVDRNVLRLGAWELMNRPEVPRAVILDEAVELAK 111 Query: 136 DFFYGDEPKFINAVLDKVS 154 + + F+N VLD+++ Sbjct: 112 RYGSEESGAFVNGVLDRIA 130 >gi|331697319|ref|YP_004333558.1| NusB antitermination factor [Pseudonocardia dioxanivorans CB1190] gi|326952008|gb|AEA25705.1| NusB antitermination factor [Pseudonocardia dioxanivorans CB1190] Length = 139 Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 25/84 (29%), Positives = 49/84 (58%), Gaps = 1/84 (1%) Query: 71 VIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEY 130 +++ GV++ ++ ID L++ E W+ +R+ + ++LR GV EL+ + V I+E Sbjct: 47 LLVQGVVEHRERIDQLLAEH-AEGWTVARMPAVDRTLLRIGVFELLWVDEIDDPVAITEA 105 Query: 131 VCIAHDFFYGDEPKFINAVLDKVS 154 V +A D P+F+N VL +++ Sbjct: 106 VELARTLSTDDSPRFLNGVLGRIA 129 >gi|307730712|ref|YP_003907936.1| NusB antitermination factor [Burkholderia sp. CCGE1003] gi|307585247|gb|ADN58645.1| NusB antitermination factor [Burkholderia sp. CCGE1003] Length = 144 Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 42/147 (28%), Positives = 65/147 (44%), Gaps = 15/147 (10%) Query: 10 LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF 69 +K + RR +R A Q LYQ + G EI D +L + D E Sbjct: 1 MKSARRR--SRELATQGLYQWLLSGSPGGEI-----------DAQLRGAQGFDKADHEHL 47 Query: 70 RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISE 129 I+HGV+ + + I+ CL +L + ++L EL +P V+I+E Sbjct: 48 DAILHGVIRDSEALSADIAPCLDR--PIDQLSPVERAVLLVAAFELKNHIDIPYRVVINE 105 Query: 130 YVCIAHDFFYGDEPKFINAVLDKVSRK 156 V +A F D K++N VLDK++ K Sbjct: 106 AVELAKTFGGADGYKYVNGVLDKLAAK 132 >gi|323527047|ref|YP_004229200.1| NusB antitermination factor [Burkholderia sp. CCGE1001] gi|323384049|gb|ADX56140.1| NusB antitermination factor [Burkholderia sp. CCGE1001] Length = 144 Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 42/147 (28%), Positives = 65/147 (44%), Gaps = 15/147 (10%) Query: 10 LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF 69 +K + RR +R A Q LYQ + G EI D +L + D E Sbjct: 1 MKSARRR--SRELATQGLYQWLLSGSPGGEI-----------DAQLRGAQGFDKADHEHL 47 Query: 70 RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISE 129 I+HGV+ + + I+ CL +L + ++L EL +P V+I+E Sbjct: 48 DAILHGVIRDSEALSADIAPCLDR--PIDQLSPVERAVLLVAAFELKNHIDIPYRVVINE 105 Query: 130 YVCIAHDFFYGDEPKFINAVLDKVSRK 156 V +A F D K++N VLDK++ K Sbjct: 106 AVELAKTFGGADGYKYVNGVLDKLAAK 132 >gi|218549924|ref|YP_002383715.1| transcription antitermination protein NusB [Escherichia fergusonii ATCC 35469] gi|226738904|sp|B7LMH1|NUSB_ESCF3 RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|218357465|emb|CAQ90104.1| transcription antitermination protein [Escherichia fergusonii ATCC 35469] gi|324114635|gb|EGC08603.1| transcription antitermination protein NusB [Escherichia fergusonii B253] gi|325498301|gb|EGC96160.1| transcription antitermination protein NusB [Escherichia fergusonii ECD227] Length = 139 Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 41/132 (31%), Positives = 65/132 (49%), Gaps = 13/132 (9%) Query: 23 AVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQH 82 AVQALY + ++ Y+F A E DV+ V D+ +FR ++ GV + Sbjct: 13 AVQALYSWQLSRNDIADV-----EYQFLA--EQDVKDV----DVLYFRELLAGVATNTAY 61 Query: 83 IDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDE 142 +D L+ L+ L + ++LR + EL + VP +V I+E + +A F D Sbjct: 62 LDGLMKPYLSR--LLEELGQVEKAVLRIALFELSKRSDVPYKVAINEAIELAKTFGAEDS 119 Query: 143 PKFINAVLDKVS 154 KF+N VLDK + Sbjct: 120 HKFVNGVLDKAA 131 >gi|168215452|ref|ZP_02641077.1| N utilization substance protein B [Clostridium perfringens NCTC 8239] gi|182382114|gb|EDT79593.1| N utilization substance protein B [Clostridium perfringens NCTC 8239] Length = 135 Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 39/141 (27%), Positives = 66/141 (46%), Gaps = 10/141 (7%) Query: 15 RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74 R +R +Q YQ++I + E + ++ D D +DL + + + Sbjct: 2 NRVKSREYLLQLAYQMEITSETALET---FNSFMENEDISKD------DLDLAYIKSGLL 52 Query: 75 GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134 G+ + K+ +D LI S L KW +R+ + SILR E++ VP +V I+E + + Sbjct: 53 GIEENKEKLDSLIESQLV-KWKLNRISKVNLSILRISTYEILFAEDVPGKVSINEAIELC 111 Query: 135 HDFFYGDEPKFINAVLDKVSR 155 + FIN VLDKV + Sbjct: 112 KKYSDNKSVSFINGVLDKVYK 132 >gi|261867676|ref|YP_003255598.1| transcription antitermination protein NusB [Aggregatibacter actinomycetemcomitans D11S-1] gi|261413008|gb|ACX82379.1| transcription antitermination factor NusB [Aggregatibacter actinomycetemcomitans D11S-1] Length = 141 Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 48/144 (33%), Positives = 75/144 (52%), Gaps = 14/144 (9%) Query: 11 KLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFR 70 K+S RR AR AVQALY I ++ EI+ F TE D++ V D +FR Sbjct: 7 KISPRRR-ARECAVQALYSW-AISKNSPEIVE----LNFI--TEQDMKGV----DTPYFR 54 Query: 71 VIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEY 130 + ++ + +D + C ++ + LD I +ILR V EL +VP +V+I+E Sbjct: 55 KLFRQTVENVEAVDATMQ-CYLDR-TLEELDPIEKAILRLAVYELQFEANVPYKVVINEA 112 Query: 131 VCIAHDFFYGDEPKFINAVLDKVS 154 + +A F + K+IN VLDK++ Sbjct: 113 IEVAKVFGADESHKYINGVLDKIA 136 >gi|317405459|gb|EFV85770.1| N utilization substance protein B [Achromobacter xylosoxidans C54] Length = 163 Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 42/147 (28%), Positives = 68/147 (46%), Gaps = 24/147 (16%) Query: 24 VQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHI 83 +Q +Y + G T+ E + + DTE + D +WF+ ++HGV+ Sbjct: 32 LQGVYAWLLRGGEGTQDAGEIDAH--LRDTE-----EFSEADAQWFKTLLHGVLRE---- 80 Query: 84 DLLISSCLTEKWS------FSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDF 137 + L E+++ + L + IL G ELI VP +V I+E V +A F Sbjct: 81 ----APALRERFTPYVDRPLAELSPVEHGILLIGSFELIHHVEVPYKVAINEAVELAKSF 136 Query: 138 FYGDEPKFINAVLDKVS---RKEEIKR 161 D KF+N VLDK++ R E+K+ Sbjct: 137 GGTDGFKFVNGVLDKLAADVRSHEMKK 163 >gi|110803071|ref|YP_699107.1| transcription antitermination protein NusB [Clostridium perfringens SM101] gi|119390760|sp|Q0SS00|NUSB_CLOPS RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|110683572|gb|ABG86942.1| N utilization substance protein B [Clostridium perfringens SM101] Length = 135 Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 39/141 (27%), Positives = 66/141 (46%), Gaps = 10/141 (7%) Query: 15 RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74 R +R +Q YQ++I + E + ++ D D +DL + + + Sbjct: 2 NRVKSREYLLQLAYQMEITSETALET---FNSFMENEDISKD------DLDLAYIKSGLL 52 Query: 75 GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134 G+ + K+ +D LI S L KW +R+ + SILR E++ VP +V I+E + + Sbjct: 53 GIEENKEKLDSLIESQLV-KWKLNRISKVNLSILRISTYEILFAEDVPGKVSINEAIELC 111 Query: 135 HDFFYGDEPKFINAVLDKVSR 155 + FIN VLDKV + Sbjct: 112 KKYSDNKSVSFINGVLDKVYK 132 >gi|18310806|ref|NP_562740.1| transcription antitermination protein NusB [Clostridium perfringens str. 13] gi|110801167|ref|YP_696507.1| transcription antitermination protein NusB [Clostridium perfringens ATCC 13124] gi|168206122|ref|ZP_02632127.1| N utilization substance protein B [Clostridium perfringens E str. JGS1987] gi|168210813|ref|ZP_02636438.1| N utilization substance protein B [Clostridium perfringens B str. ATCC 3626] gi|168214398|ref|ZP_02640023.1| N utilization substance protein B [Clostridium perfringens CPE str. F4969] gi|169343548|ref|ZP_02864547.1| N utilization substance protein B [Clostridium perfringens C str. JGS1495] gi|182625668|ref|ZP_02953437.1| N utilization substance protein B [Clostridium perfringens D str. JGS1721] gi|22095945|sp|Q8XJD6|NUSB_CLOPE RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|119390759|sp|Q0TPD3|NUSB_CLOP1 RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|18145487|dbj|BAB81530.1| probable N utilization substance protein B [Clostridium perfringens str. 13] gi|110675814|gb|ABG84801.1| N utilization substance protein B [Clostridium perfringens ATCC 13124] gi|169298108|gb|EDS80198.1| N utilization substance protein B [Clostridium perfringens C str. JGS1495] gi|170662434|gb|EDT15117.1| N utilization substance protein B [Clostridium perfringens E str. JGS1987] gi|170711117|gb|EDT23299.1| N utilization substance protein B [Clostridium perfringens B str. ATCC 3626] gi|170714129|gb|EDT26311.1| N utilization substance protein B [Clostridium perfringens CPE str. F4969] gi|177909070|gb|EDT71545.1| N utilization substance protein B [Clostridium perfringens D str. JGS1721] Length = 135 Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 39/141 (27%), Positives = 66/141 (46%), Gaps = 10/141 (7%) Query: 15 RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74 R +R +Q YQ++I + E + ++ D D +DL + + + Sbjct: 2 NRVKSREYLLQLAYQMEITSETALET---FNSFMENEDISKD------DLDLAYIKSGLL 52 Query: 75 GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134 G+ + K+ +D LI S L KW +R+ + SILR E++ VP +V I+E + + Sbjct: 53 GIEENKEKLDSLIESQLV-KWKLNRISKVNLSILRISTYEILFAEDVPGKVSINEAIELC 111 Query: 135 HDFFYGDEPKFINAVLDKVSR 155 + FIN VLDKV + Sbjct: 112 KKYSDNKSVSFINGVLDKVYK 132 >gi|90415724|ref|ZP_01223658.1| transcription antitermination protein NusB [marine gamma proteobacterium HTCC2207] gi|90333047|gb|EAS48217.1| transcription antitermination protein NusB [marine gamma proteobacterium HTCC2207] Length = 146 Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 43/139 (30%), Positives = 63/139 (45%), Gaps = 13/139 (9%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 R AR VQALY D+ +I +E+ V++ VD E F I+ G Sbjct: 7 RQKARRLLVQALYSWDMGKTDLIDIEAEFH-----------VDNNMATVDTELFHEILFG 55 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135 V ID L +LD + +ILR E++ VP +V+I+E V +A Sbjct: 56 VPKHMTEIDAAYEPYLDRDQD--QLDPVSQAILRLSTYEMLHRIDVPYKVVINEGVNLAK 113 Query: 136 DFFYGDEPKFINAVLDKVS 154 F D K+IN +LD+V+ Sbjct: 114 TFGPTDAFKYINGILDRVA 132 >gi|27363793|ref|NP_759321.1| transcription antitermination protein NusB [Vibrio vulnificus CMCP6] gi|37679049|ref|NP_933658.1| transcription antitermination protein NusB [Vibrio vulnificus YJ016] gi|320157202|ref|YP_004189581.1| 6,7-dimethyl-8-ribityllumazine synthase [Vibrio vulnificus MO6-24/O] gi|29611804|sp|Q8DFA0|NUSB_VIBVU RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|39931709|sp|Q7MN52|NUSB_VIBVY RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|27359910|gb|AAO08848.1| transcription antitermination factor NusB [Vibrio vulnificus CMCP6] gi|37197791|dbj|BAC93629.1| transcription termination factor [Vibrio vulnificus YJ016] gi|319932514|gb|ADV87378.1| 6,7-dimethyl-8-ribityllumazine synthase [Vibrio vulnificus MO6-24/O] Length = 155 Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 45/153 (29%), Positives = 73/153 (47%), Gaps = 16/153 (10%) Query: 10 LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVES--------VY 61 +K + RR AR A+QA+Y I T E ++ E +F A + D E Sbjct: 5 VKPAARRN-ARQFALQAIYSWQI----TKENVATIEA-QFLAGEKYDEEEHRAAEPALAA 58 Query: 62 LHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSV 121 D+ +FR ++ GV+ +D I ++ LDM+ ++LR + E+ V Sbjct: 59 PETDVAYFRDLLTGVVLSHTELDSKIRPYVSR--PMQDLDMMELALLRLAMYEMTRREDV 116 Query: 122 PVEVIISEYVCIAHDFFYGDEPKFINAVLDKVS 154 P +V+I+E + +A F D KF+N VLDK + Sbjct: 117 PYKVVINEAIELAKVFAAEDSHKFVNGVLDKAA 149 >gi|262196667|ref|YP_003267876.1| NusB antitermination factor [Haliangium ochraceum DSM 14365] gi|262080014|gb|ACY15983.1| NusB antitermination factor [Haliangium ochraceum DSM 14365] Length = 150 Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 43/145 (29%), Positives = 69/145 (47%), Gaps = 12/145 (8%) Query: 10 LKLSHRRGIARLAAVQALYQIDIIGCS-TTEIISEYETYRFCADTELDVESVYLHVDLEW 68 +K+ RR AR A+Q LY +D+ T + EY RF D +D E+ ++ Sbjct: 1 MKVGARR-RARSYALQVLYALDLNPLEEPTRALLEY-AGRF--DLRIDEEAG------DF 50 Query: 69 FRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIIS 128 R +I V + ID I + + W R+ + ++LR V EL + V+I+ Sbjct: 51 ARSLIEQVYPHLERIDERIQTA-SRNWRIERMSRVDRNVLRLAVGELSQPDGAAARVVIN 109 Query: 129 EYVCIAHDFFYGDEPKFINAVLDKV 153 E V +A F + P F+N +LD+V Sbjct: 110 EAVELAKRFGTTESPAFVNGILDRV 134 >gi|251783265|ref|YP_002997570.1| transcription antitermination protein NusB [Streptococcus dysgalactiae subsp. equisimilis GGS_124] gi|242391897|dbj|BAH82356.1| transcription antitermination protein [Streptococcus dysgalactiae subsp. equisimilis GGS_124] Length = 155 Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 41/155 (26%), Positives = 74/155 (47%), Gaps = 23/155 (14%) Query: 2 TIQDNKKDLKLSHRRGIARLAAVQALYQIDIIG--CSTTEIISEYETYRFCADTELDVES 59 + Q++++DL R A QAL+ +++ G ++ +Y+ + L++ Sbjct: 10 SFQNSRRDL---------RERAFQALFSMEMGGDFLVASQFAYDYDKVVDEGNEALELPI 60 Query: 60 VYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECH 119 L+ +++GV D K+ +D IS L WS RL M ++LR G+ E+ + Sbjct: 61 FLLN--------LVNGVNDHKEELDRTISEHLKTGWSLERLTMTDKTLLRLGLFEIKYFN 112 Query: 120 SVPVEVIISEYVCIAHDFFYGDE--PKFINAVLDK 152 P V ++E + +A Y DE KFIN +L + Sbjct: 113 ETPDRVALNEIIEVAKK--YSDETSAKFINGLLSQ 145 >gi|238760660|ref|ZP_04621785.1| N utilization substance protein B [Yersinia aldovae ATCC 35236] gi|238701125|gb|EEP93717.1| N utilization substance protein B [Yersinia aldovae ATCC 35236] Length = 138 Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 43/134 (32%), Positives = 64/134 (47%), Gaps = 17/134 (12%) Query: 23 AVQALYQIDIIGCSTTEIISEYETYRFCADTELDV--ESVYLHVDLEWFRVIIHGVMDRK 80 AVQALY + S +I AD EL E VD+ +FR ++ GV Sbjct: 13 AVQALYSWQL---SKNDI----------ADVELQFLSEQDVKDVDIAYFRELLSGVAVHA 59 Query: 81 QHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYG 140 +D L+ L+ + L + ++LR + EL + VP +V I+E + +A F Sbjct: 60 ASLDALMEPFLSRQ--LEELGQVERAVLRIALFELSKRQDVPYKVAINEAIELAKTFGAE 117 Query: 141 DEPKFINAVLDKVS 154 D KF+N VLDKV+ Sbjct: 118 DSHKFVNGVLDKVA 131 >gi|163781900|ref|ZP_02176900.1| transcription antitermination protein NusB [Hydrogenivirga sp. 128-5-R1-1] gi|159883120|gb|EDP76624.1| transcription antitermination protein NusB [Hydrogenivirga sp. 128-5-R1-1] Length = 144 Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 40/138 (28%), Positives = 62/138 (44%), Gaps = 11/138 (7%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 R AR ++ LY+ DI G S I EY + + E+ E+ ++ Sbjct: 4 RKKARENSLMVLYRWDIRGDSIDRIREEYVEEKGIKNREI----------REYMDKLLST 53 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135 V D+ ID LIS +E WSF RL I ++LR GV EL+ ++Y+ I Sbjct: 54 VRDKLPEIDSLISEY-SEGWSFDRLGYIERNVLRLGVAELLYADPPDPGRAFNDYLDIVK 112 Query: 136 DFFYGDEPKFINAVLDKV 153 + +F+N +L K+ Sbjct: 113 RYADRKAARFVNGILSKI 130 >gi|150016575|ref|YP_001308829.1| NusB antitermination factor [Clostridium beijerinckii NCIMB 8052] gi|189035883|sp|A6LU43|NUSB_CLOB8 RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|149903040|gb|ABR33873.1| NusB antitermination factor [Clostridium beijerinckii NCIMB 8052] Length = 133 Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 42/142 (29%), Positives = 68/142 (47%), Gaps = 14/142 (9%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 R ++R A++ L+ G + ++ E F + E D++ +DL + + ++ G Sbjct: 3 RKLSREKAMELLF-----GMTLSKDTMEDAVEAFVENYEGDIK----EIDLTYVKQVLIG 53 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135 V + K+ ID +I L W R+ + SILR EL+ VP V I+E + I Sbjct: 54 VNNNKEAIDKVIQENL-HNWKIERISKVNLSILRIATYELLYDKEVPRGVAINEALEITR 112 Query: 136 DFFYGDEPK--FINAVLDKVSR 155 Y DE FIN VLDK+ + Sbjct: 113 R--YSDEKSVSFINGVLDKIKQ 132 >gi|315639636|ref|ZP_07894776.1| N utilization substance protein B [Enterococcus italicus DSM 15952] gi|315484597|gb|EFU75053.1| N utilization substance protein B [Enterococcus italicus DSM 15952] Length = 150 Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 39/141 (27%), Positives = 64/141 (45%), Gaps = 11/141 (7%) Query: 20 RLAAVQALYQIDI-IGCSTTEIIS---EYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 R AVQ+L+ +D S + I+ E Y + E + YL +W ++ G Sbjct: 11 REMAVQSLFPLDFSTEFSKQDAIAHAIEVNQYDLLDEEEENFVPDYL----DW---LVSG 63 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135 V + K +D I S L W RL + +ILR + E+ VP +V+++E + + Sbjct: 64 VCEHKNELDKEIESFLRPGWKIGRLAKMDVTILRLAIFEMQHAEDVPNKVVLNEAIELTK 123 Query: 136 DFFYGDEPKFINAVLDKVSRK 156 F KF+N VL ++ K Sbjct: 124 TFSDDQSRKFVNGVLSSINNK 144 >gi|296101538|ref|YP_003611684.1| transcription antitermination protein NusB [Enterobacter cloacae subsp. cloacae ATCC 13047] gi|295055997|gb|ADF60735.1| transcription antitermination protein NusB [Enterobacter cloacae subsp. cloacae ATCC 13047] Length = 139 Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 40/132 (30%), Positives = 65/132 (49%), Gaps = 13/132 (9%) Query: 23 AVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQH 82 AVQALY + ++ Y+F +E DV+ V D+ +FR ++ GV + Sbjct: 13 AVQALYSWQLSQNDIADV-----EYQFL--SEQDVKDV----DVLYFRELLSGVATNSAY 61 Query: 83 IDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDE 142 +D L+ L+ L + ++LR + EL + VP +V I+E + +A F D Sbjct: 62 LDGLMKPYLSR--LLEELGQVEKAVLRIALFELSKRDDVPYKVAINEAIELAKTFGAEDS 119 Query: 143 PKFINAVLDKVS 154 KF+N VLDK + Sbjct: 120 HKFVNGVLDKAA 131 >gi|237736360|ref|ZP_04566841.1| transcription antitermination protein NusB [Fusobacterium mortiferum ATCC 9817] gi|229421402|gb|EEO36449.1| transcription antitermination protein NusB [Fusobacterium mortiferum ATCC 9817] Length = 132 Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 40/143 (27%), Positives = 74/143 (51%), Gaps = 15/143 (10%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 R +AR + +++ ++ ST E++ Y D L E+ +L + + ++G Sbjct: 3 RRVAREELFKLVFESELKEESTKEVLDNY----LKRDEVLTNEN-----ELAFIKKYMNG 53 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135 + + I I++ +T WSF R+ + ++LR V EL+ C + P E++++E V +A Sbjct: 54 IAENNDRILETINNNIT-GWSFERIGNVEKALLRCSVYELL-CETTPHEIVVNEVVELAK 111 Query: 136 DFFYGDEP--KFINAVLDKVSRK 156 YGDE +F+N VL K+ K Sbjct: 112 --LYGDEKTSEFVNGVLAKIINK 132 >gi|57233932|ref|YP_181990.1| N utilization substance protein B [Dehalococcoides ethenogenes 195] gi|119390764|sp|Q3Z709|NUSB_DEHE1 RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|57224380|gb|AAW39437.1| N utilization substance protein B [Dehalococcoides ethenogenes 195] Length = 143 Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 42/146 (28%), Positives = 68/146 (46%), Gaps = 16/146 (10%) Query: 12 LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71 ++ R AR +QALY+ D+ G + +++ T TE + E + FR+ Sbjct: 1 MTTSRRKAREIVLQALYEQDLAGHNAEDVLKRLLTE--TPQTEENAEFI--------FRL 50 Query: 72 IIHGVMDRKQHIDLLISSC--LTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISE 129 V +H DLL + W +L I ++LR + E+I + VP++V I+E Sbjct: 51 TNAIV----KHKDLLDENIRQFASAWPVEQLSYIDRNVLRLAIFEIIHENDVPIKVAINE 106 Query: 130 YVCIAHDFFYGDEPKFINAVLDKVSR 155 V +A F +FIN VL VS+ Sbjct: 107 AVELAKSFGGNSSARFINGVLSSVSK 132 >gi|289550704|ref|YP_003471608.1| Transcription termination protein NusB [Staphylococcus lugdunensis HKU09-01] gi|315658200|ref|ZP_07911072.1| transcription antitermination factor NusB [Staphylococcus lugdunensis M23590] gi|289180236|gb|ADC87481.1| Transcription termination protein NusB [Staphylococcus lugdunensis HKU09-01] gi|315496529|gb|EFU84852.1| transcription antitermination factor NusB [Staphylococcus lugdunensis M23590] Length = 128 Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 42/139 (30%), Positives = 64/139 (46%), Gaps = 13/139 (9%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 R +R A Q L+Q+++ +S E F D D++ ++H W ++ G Sbjct: 3 RKESRTQAFQTLFQLEMKDSD----LSISEAINFIKDDHPDLDFTFIH----W---LVTG 51 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135 V D + +D I L + WS +RL ILR EL+ P +VII+E V + Sbjct: 52 VKDHEPILDKAIEPHLKD-WSLNRLLKTDRIILRMATFELLHS-DTPPKVIINEAVELTK 109 Query: 136 DFFYGDEPKFINAVLDKVS 154 F D KFIN VL ++ Sbjct: 110 QFSDDDHYKFINGVLSNIN 128 >gi|229820523|ref|YP_002882049.1| NusB antitermination factor [Beutenbergia cavernae DSM 12333] gi|259514802|sp|C5C681|NUSB_BEUC1 RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|229566436|gb|ACQ80287.1| NusB antitermination factor [Beutenbergia cavernae DSM 12333] Length = 153 Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 29/90 (32%), Positives = 46/90 (51%), Gaps = 1/90 (1%) Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131 I+ GV + ID L+ + + WS R+ + +ILR GV EL+ VP V + E V Sbjct: 57 IVEGVAAHQARIDELLETY-AQGWSLERMPAVDRAILRIGVWELLFNDDVPDAVAVDEAV 115 Query: 132 CIAHDFFYGDEPKFINAVLDKVSRKEEIKR 161 +A + D P F+N +L ++ R + R Sbjct: 116 ALAAELSTDDSPTFVNGLLGQLLRLAPVLR 145 >gi|50954771|ref|YP_062059.1| transcription termination factor [Leifsonia xyli subsp. xyli str. CTCB07] gi|71648799|sp|Q6AF91|NUSB_LEIXX RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|50951253|gb|AAT88954.1| transcription termination factor [Leifsonia xyli subsp. xyli str. CTCB07] Length = 144 Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 46/150 (30%), Positives = 72/150 (48%), Gaps = 11/150 (7%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 R AR A+ L+ D+ S ++ E R A E E+ +L+ R I+ G Sbjct: 4 RTKARKRALDLLFSADVRQISLAHALA-VEAER--AANEPAREASWLYA-----REIVDG 55 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135 V+D ++ ID I + + W+ +R+ + +ILR GV EL+ VP V ISE V A Sbjct: 56 VIDNQEEIDEQIET-YAQGWTLARMPAVDRAILRIGVWELLFNDQVPDGVAISEAVEAAT 114 Query: 136 DFFYGDEPKFINAVLDKVSRKEEIKRSGCV 165 D F+N +L K+++ + R G V Sbjct: 115 VLSTDDSAGFVNGLLAKIAQNK--PRDGEV 142 >gi|313676012|ref|YP_004054008.1| nusb antitermination factor [Marivirga tractuosa DSM 4126] gi|312942710|gb|ADR21900.1| NusB antitermination factor [Marivirga tractuosa DSM 4126] Length = 382 Score = 52.8 bits (125), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 29/103 (28%), Positives = 57/103 (55%), Gaps = 5/103 (4%) Query: 65 DLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVE 124 D E+F+ + ++ + ++S + W+ R+ ++ IL+ V E++ S+PV+ Sbjct: 274 DSEFFKDLFTNTINNDDEYEKIVSD-FAKNWASERIAIVDMIILKMAVSEMLNFPSIPVK 332 Query: 125 VIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEE----IKRSG 163 V I+EY+ ++ ++ F+N +LDK+S K E IK+SG Sbjct: 333 VTINEYIELSKNYSTQKSKIFVNGMLDKISAKLEKDGKIKKSG 375 >gi|251790668|ref|YP_003005389.1| transcription antitermination protein NusB [Dickeya zeae Ech1591] gi|247539289|gb|ACT07910.1| NusB antitermination factor [Dickeya zeae Ech1591] Length = 139 Score = 52.8 bits (125), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 43/134 (32%), Positives = 64/134 (47%), Gaps = 17/134 (12%) Query: 23 AVQALYQIDIIGCSTTEIISEYETYRFCADTELDV--ESVYLHVDLEWFRVIIHGVMDRK 80 AVQALY + S +I AD EL E VD+ +FR ++ GV + Sbjct: 13 AVQALYSWQL---SKNDI----------ADVELQFLSEQDVKGVDIAYFRELLAGVATQA 59 Query: 81 QHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYG 140 + +D ++ L+ + L + +ILR V EL + VP +V I+E + +A F Sbjct: 60 EKLDAQMAPYLSRQ--LEELGQVERAILRLAVYELSKREDVPYKVAINEAIELAKVFGAE 117 Query: 141 DEPKFINAVLDKVS 154 D KF+N VLDK Sbjct: 118 DSHKFVNGVLDKAG 131 >gi|262202262|ref|YP_003273470.1| transcription antitermination factor NusB [Gordonia bronchialis DSM 43247] gi|262085609|gb|ACY21577.1| transcription antitermination factor NusB [Gordonia bronchialis DSM 43247] Length = 163 Score = 52.8 bits (125), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 42/145 (28%), Positives = 71/145 (48%), Gaps = 9/145 (6%) Query: 10 LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF 69 +K R AR AV L++ + S ++++E R ++ V +++ ++ Sbjct: 1 MKQPGTRHKARRRAVDILFEAEAKQVSPAQLVAER---RELVRSDESVGAIH-----DYT 52 Query: 70 RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISE 129 +I G+ D ++ ID +ISS L E W+ RL + +ILR EL V VI+ E Sbjct: 53 ARVIEGLADDQEQIDSVISSHLRE-WTLPRLPAVDRAILRLATWELFNSVDVDTVVIVDE 111 Query: 130 YVCIAHDFFYGDEPKFINAVLDKVS 154 V +A + D P F+N VL K++ Sbjct: 112 AVELAKELSTDDSPAFVNGVLAKIA 136 >gi|308276510|gb|ADO26409.1| N utilization substance protein B (Protein nusB) [Corynebacterium pseudotuberculosis I19] Length = 210 Score = 52.8 bits (125), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 38/144 (26%), Positives = 64/144 (44%), Gaps = 7/144 (4%) Query: 19 ARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMD 78 AR A + LY+ ++ II + + D L V V + + I+ G Sbjct: 34 ARRRAAEVLYEAEVRDVDPVAIIEDRIALSYHQD--LGVAPVAAYT-----KEIVAGTAQ 86 Query: 79 RKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFF 138 ID LI++ L E W R+ + ++LR V ELI VPV + + V + + Sbjct: 87 ELDRIDGLIAANLAENWELERISAVDRAVLRVAVWELIFNEDVPVATAVVDGVELVSQYS 146 Query: 139 YGDEPKFINAVLDKVSRKEEIKRS 162 P ++NA+LD +++ E R+ Sbjct: 147 TDVAPAYVNALLDSIAQNIESHRA 170 >gi|254445455|ref|ZP_05058931.1| transcription antitermination factor NusB [Verrucomicrobiae bacterium DG1235] gi|198259763|gb|EDY84071.1| transcription antitermination factor NusB [Verrucomicrobiae bacterium DG1235] Length = 133 Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 30/96 (31%), Positives = 53/96 (55%), Gaps = 3/96 (3%) Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131 +IHG+++ + ID I L + W FSR+ I +ILR EL+ +P V I+E + Sbjct: 39 LIHGMVENSEDIDDKIMG-LAKNWDFSRIAKIDLAILRLAAYELLFRKDIPPVVTINEAI 97 Query: 132 CIAHDFFYGDEPKFINAVLDKVSRKEEIKRSGCVSA 167 ++ +F + +F+N +LDK+ K E+ R ++ Sbjct: 98 DLSKEFSTAESRRFVNGILDKL--KGELDRPSRTAS 131 >gi|171463084|ref|YP_001797197.1| NusB antitermination factor [Polynucleobacter necessarius subsp. necessarius STIR1] gi|171192622|gb|ACB43583.1| NusB antitermination factor [Polynucleobacter necessarius subsp. necessarius STIR1] Length = 169 Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 45/162 (27%), Positives = 73/162 (45%), Gaps = 29/162 (17%) Query: 8 KDLKLSHRRGI-----ARLAAVQALYQIDII--------GCSTTEIISEYETYRFCADTE 54 KD K S +R + AR A+Q +YQ ++ G + + +SE +R C Sbjct: 15 KDAKPSPKRSLTPRRRAREYALQGVYQSLVMRRAGSIPNGAAIAKQLSEDPAFRRC---- 70 Query: 55 LDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLE 114 L+ F+ I GV+ R ++ +I+ L + L + + L G E Sbjct: 71 ----------QLDLFQSIFDGVLARTDELEAIITPALDR--PINELSPVEHAALLIGAYE 118 Query: 115 LIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRK 156 L SVP +V I+E V +A F D K++N VLD +++K Sbjct: 119 LAADLSVPYKVAINEAVELAKTFGGTDGHKYVNGVLDLLAQK 160 >gi|37527753|ref|NP_931098.1| transcription antitermination protein NusB [Photorhabdus luminescens subsp. laumondii TTO1] gi|39931724|sp|Q7N0J0|NUSB_PHOLL RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|36787189|emb|CAE16269.1| N utilization substance protein B [Photorhabdus luminescens subsp. laumondii TTO1] Length = 138 Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 41/130 (31%), Positives = 64/130 (49%), Gaps = 13/130 (10%) Query: 23 AVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQH 82 AVQA+Y + G S ++ +F +E DV V D+ +FR ++ GV Sbjct: 13 AVQAIYSWQLSGNSIADV-----ELQFL--SEQDVTGV----DVTYFRELLSGVAVNAAK 61 Query: 83 IDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDE 142 +D L++ L+ + L + +ILR + EL VP +V I+E + +A F D Sbjct: 62 LDALMAPYLSRQ--LEELGQVEKAILRIAMFELSYRDDVPYKVAINEAIELAKVFGAEDS 119 Query: 143 PKFINAVLDK 152 KF+N VLDK Sbjct: 120 HKFVNGVLDK 129 >gi|300858556|ref|YP_003783539.1| N utilization substance protein B-like protein [Corynebacterium pseudotuberculosis FRC41] gi|300686010|gb|ADK28932.1| N utilization substance protein B-like protein [Corynebacterium pseudotuberculosis FRC41] gi|302206268|gb|ADL10610.1| N utilization substance protein B (Protein nusB) [Corynebacterium pseudotuberculosis C231] gi|302330826|gb|ADL21020.1| N utilization substance protein B (Protein nusB) [Corynebacterium pseudotuberculosis 1002] Length = 208 Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 38/144 (26%), Positives = 64/144 (44%), Gaps = 7/144 (4%) Query: 19 ARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMD 78 AR A + LY+ ++ II + + D L V V + + I+ G Sbjct: 32 ARRRAAEVLYEAEVRDVDPVAIIEDRIALSYHQD--LGVAPVAAYT-----KEIVAGTAQ 84 Query: 79 RKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFF 138 ID LI++ L E W R+ + ++LR V ELI VPV + + V + + Sbjct: 85 ELDRIDGLIAANLAENWELERISAVDRAVLRVAVWELIFNEDVPVATAVVDGVELVSQYS 144 Query: 139 YGDEPKFINAVLDKVSRKEEIKRS 162 P ++NA+LD +++ E R+ Sbjct: 145 TDVAPAYVNALLDSIAQNIESHRA 168 >gi|304316761|ref|YP_003851906.1| NusB antitermination factor [Thermoanaerobacterium thermosaccharolyticum DSM 571] gi|302778263|gb|ADL68822.1| NusB antitermination factor [Thermoanaerobacterium thermosaccharolyticum DSM 571] Length = 140 Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 37/136 (27%), Positives = 61/136 (44%), Gaps = 13/136 (9%) Query: 15 RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74 R AR V+ LYQ D+ +I++ RF + + E Y+ + Sbjct: 2 NRTQAREWLVKLLYQFDVSKSEPPDILN-----RFFESNDPEEEKDYIEK-------TFY 49 Query: 75 GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134 G+++ +ID I L + W +R+ I +I+R E++ C +P V I+E V IA Sbjct: 50 GIVENVNNIDDRIKKYL-KNWDINRIAKIDLAIIRCSFYEILYCDDIPNSVSINEAVEIA 108 Query: 135 HDFFYGDEPKFINAVL 150 + P FIN +L Sbjct: 109 KKYSTEKSPSFINGIL 124 >gi|319892510|ref|YP_004149385.1| Transcription termination protein NusB [Staphylococcus pseudintermedius HKU10-03] gi|317162206|gb|ADV05749.1| Transcription termination protein NusB [Staphylococcus pseudintermedius HKU10-03] gi|323464388|gb|ADX76541.1| transcription antitermination factor NusB [Staphylococcus pseudintermedius ED99] Length = 130 Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 44/142 (30%), Positives = 67/142 (47%), Gaps = 15/142 (10%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 R AR A Q L+Q+++ T I E ++ ++ Y +D ++ + ++ G Sbjct: 3 RKQARSQAFQTLFQLEMKNTELT--IDEAISF---------IKEDYPDLDFDFIKWLVSG 51 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHS-VPVEVIISEYVCIA 134 V D + +D IS L W+ +RL ILR E+ HS P +VII+E V +A Sbjct: 52 VKDHQHVLDETISPHLN-GWTIARLLKTDRIILRMATFEM--NHSDTPEKVIINEAVELA 108 Query: 135 HDFFYGDEPKFINAVLDKVSRK 156 F D KFIN VL + R Sbjct: 109 KQFSDDDHYKFINGVLSHIKRN 130 >gi|312869983|ref|ZP_07730122.1| transcription antitermination factor NusB [Lactobacillus oris PB013-T2-3] gi|311094568|gb|EFQ52873.1| transcription antitermination factor NusB [Lactobacillus oris PB013-T2-3] Length = 136 Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 30/93 (32%), Positives = 45/93 (48%) Query: 67 EWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVI 126 E+ + + GV DR+ +D ISS L W+ RL ILR + EL VP V Sbjct: 44 EYVQRLATGVSDRQAALDGQISSLLASDWTIDRLAKADLIILRLALYELQYVEEVPTPVA 103 Query: 127 ISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEI 159 I+E + +A +F KFIN L + ++ + Sbjct: 104 INEALELAKEFSNDQSRKFINGALGRFEKENNL 136 >gi|327330421|gb|EGE72170.1| n utilization substance protein B-like protein [Propionibacterium acnes HL097PA1] Length = 261 Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 31/138 (22%), Positives = 64/138 (46%), Gaps = 14/138 (10%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 R AR A+ L++ D+IG E+++ V+ + + ++ G Sbjct: 39 RSKARKQALDILFEADLIGTDPLEVLAARP-------------GVFTNPVRPFAADLVRG 85 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135 V + +D +++ CL+E W+ +R+ + + R G E++ + P +ISE + ++ Sbjct: 86 VAATQVGLDSVLTDCLSEGWTLARMPRVDRILARLGAFEILHTDT-PNPAVISEAIELSE 144 Query: 136 DFFYGDEPKFINAVLDKV 153 +F D F+N +L V Sbjct: 145 EFSTDDSAPFLNGLLGAV 162 >gi|119390835|sp|Q1JF82|NUSB_STRPD RecName: Full=N utilization substance protein B homolog; Short=Protein nusB Length = 150 Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 42/154 (27%), Positives = 77/154 (50%), Gaps = 21/154 (13%) Query: 2 TIQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYE-TYRFCADTELDVESV 60 + Q++++DL R A QAL+ I++ E+++ + Y + T D + + Sbjct: 4 SFQNSRRDL---------RERAFQALFNIEM----GAELLAASQFAYGYDKVTREDAQVL 50 Query: 61 YLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHS 120 L + + ++ GV + K+ +D LIS+ L + WS RL + ++LR G+ E+ Sbjct: 51 ELPI---FLLSLVTGVNNHKEELDNLISTHLKKGWSLERLTLTDKTLLRLGLFEIKYFDE 107 Query: 121 VPVEVIISEYVCIAHDFFYGDE--PKFINAVLDK 152 P V ++E + +A Y DE KFIN +L + Sbjct: 108 TPDRVALNEIIEVAKK--YSDETSAKFINGLLSQ 139 >gi|50842668|ref|YP_055895.1| putative NusB-family protein [Propionibacterium acnes KPA171202] gi|289425085|ref|ZP_06426862.1| transcription antitermination factor NusB [Propionibacterium acnes SK187] gi|289428561|ref|ZP_06430245.1| transcription antitermination factor NusB [Propionibacterium acnes J165] gi|295130747|ref|YP_003581410.1| transcription antitermination factor NusB [Propionibacterium acnes SK137] gi|81611678|sp|Q6A8H8|NUSB_PROAC RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|50840270|gb|AAT82937.1| putative NusB-family protein [Propionibacterium acnes KPA171202] gi|289154063|gb|EFD02751.1| transcription antitermination factor NusB [Propionibacterium acnes SK187] gi|289158255|gb|EFD06474.1| transcription antitermination factor NusB [Propionibacterium acnes J165] gi|291375576|gb|ADD99430.1| transcription antitermination factor NusB [Propionibacterium acnes SK137] gi|313764289|gb|EFS35653.1| transcription antitermination factor NusB [Propionibacterium acnes HL013PA1] gi|313771992|gb|EFS37958.1| transcription antitermination factor NusB [Propionibacterium acnes HL074PA1] gi|313791976|gb|EFS40077.1| transcription antitermination factor NusB [Propionibacterium acnes HL110PA1] gi|313802074|gb|EFS43308.1| transcription antitermination factor NusB [Propionibacterium acnes HL110PA2] gi|313807685|gb|EFS46172.1| transcription antitermination factor NusB [Propionibacterium acnes HL087PA2] gi|313810192|gb|EFS47913.1| transcription antitermination factor NusB [Propionibacterium acnes HL083PA1] gi|313812780|gb|EFS50494.1| transcription antitermination factor NusB [Propionibacterium acnes HL025PA1] gi|313816197|gb|EFS53911.1| transcription antitermination factor NusB [Propionibacterium acnes HL059PA1] gi|313818722|gb|EFS56436.1| transcription antitermination factor NusB [Propionibacterium acnes HL046PA2] gi|313820492|gb|EFS58206.1| transcription antitermination factor NusB [Propionibacterium acnes HL036PA1] gi|313822702|gb|EFS60416.1| transcription antitermination factor NusB [Propionibacterium acnes HL036PA2] gi|313825364|gb|EFS63078.1| transcription antitermination factor NusB [Propionibacterium acnes HL063PA1] gi|313827660|gb|EFS65374.1| transcription antitermination factor NusB [Propionibacterium acnes HL063PA2] gi|313830523|gb|EFS68237.1| transcription antitermination factor NusB [Propionibacterium acnes HL007PA1] gi|313833559|gb|EFS71273.1| transcription antitermination factor NusB [Propionibacterium acnes HL056PA1] gi|313838895|gb|EFS76609.1| transcription antitermination factor NusB [Propionibacterium acnes HL086PA1] gi|314915279|gb|EFS79110.1| transcription antitermination factor NusB [Propionibacterium acnes HL005PA4] gi|314918171|gb|EFS82002.1| transcription antitermination factor NusB [Propionibacterium acnes HL050PA1] gi|314920247|gb|EFS84078.1| transcription antitermination factor NusB [Propionibacterium acnes HL050PA3] gi|314925034|gb|EFS88865.1| transcription antitermination factor NusB [Propionibacterium acnes HL036PA3] gi|314931770|gb|EFS95601.1| transcription antitermination factor NusB [Propionibacterium acnes HL067PA1] gi|314955572|gb|EFS99973.1| transcription antitermination factor NusB [Propionibacterium acnes HL027PA1] gi|314958067|gb|EFT02170.1| transcription antitermination factor NusB [Propionibacterium acnes HL002PA1] gi|314960362|gb|EFT04464.1| transcription antitermination factor NusB [Propionibacterium acnes HL002PA2] gi|314962632|gb|EFT06732.1| transcription antitermination factor NusB [Propionibacterium acnes HL082PA1] gi|314967503|gb|EFT11602.1| transcription antitermination factor NusB [Propionibacterium acnes HL037PA1] gi|314973523|gb|EFT17619.1| transcription antitermination factor NusB [Propionibacterium acnes HL053PA1] gi|314976203|gb|EFT20298.1| transcription antitermination factor NusB [Propionibacterium acnes HL045PA1] gi|314978636|gb|EFT22730.1| transcription antitermination factor NusB [Propionibacterium acnes HL072PA2] gi|314983775|gb|EFT27867.1| transcription antitermination factor NusB [Propionibacterium acnes HL005PA1] gi|314987956|gb|EFT32047.1| transcription antitermination factor NusB [Propionibacterium acnes HL005PA2] gi|314989766|gb|EFT33857.1| transcription antitermination factor NusB [Propionibacterium acnes HL005PA3] gi|315077848|gb|EFT49899.1| transcription antitermination factor NusB [Propionibacterium acnes HL053PA2] gi|315080473|gb|EFT52449.1| transcription antitermination factor NusB [Propionibacterium acnes HL078PA1] gi|315084144|gb|EFT56120.1| transcription antitermination factor NusB [Propionibacterium acnes HL027PA2] gi|315085487|gb|EFT57463.1| transcription antitermination factor NusB [Propionibacterium acnes HL002PA3] gi|315088456|gb|EFT60432.1| transcription antitermination factor NusB [Propionibacterium acnes HL072PA1] gi|315096070|gb|EFT68046.1| transcription antitermination factor NusB [Propionibacterium acnes HL038PA1] gi|315098699|gb|EFT70675.1| transcription antitermination factor NusB [Propionibacterium acnes HL059PA2] gi|315101532|gb|EFT73508.1| transcription antitermination factor NusB [Propionibacterium acnes HL046PA1] gi|315105759|gb|EFT77735.1| transcription antitermination factor NusB [Propionibacterium acnes HL030PA1] gi|327326350|gb|EGE68140.1| n utilization substance protein B-like protein [Propionibacterium acnes HL096PA2] gi|327331775|gb|EGE73512.1| n utilization substance protein B-like protein [Propionibacterium acnes HL096PA3] gi|327443552|gb|EGE90206.1| transcription antitermination factor NusB [Propionibacterium acnes HL013PA2] gi|327445756|gb|EGE92410.1| transcription antitermination factor NusB [Propionibacterium acnes HL043PA2] gi|327448261|gb|EGE94915.1| transcription antitermination factor NusB [Propionibacterium acnes HL043PA1] gi|327450617|gb|EGE97271.1| transcription antitermination factor NusB [Propionibacterium acnes HL087PA3] gi|327453305|gb|EGE99959.1| transcription antitermination factor NusB [Propionibacterium acnes HL092PA1] gi|327454045|gb|EGF00700.1| transcription antitermination factor NusB [Propionibacterium acnes HL083PA2] gi|328753303|gb|EGF66919.1| transcription antitermination factor NusB [Propionibacterium acnes HL025PA2] gi|328754035|gb|EGF67651.1| transcription antitermination factor NusB [Propionibacterium acnes HL087PA1] gi|328754763|gb|EGF68379.1| transcription antitermination factor NusB [Propionibacterium acnes HL020PA1] gi|328760688|gb|EGF74254.1| n utilization substance protein B-like protein [Propionibacterium acnes HL099PA1] gi|332675591|gb|AEE72407.1| N utilization substance protein B [Propionibacterium acnes 266] Length = 261 Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 31/138 (22%), Positives = 64/138 (46%), Gaps = 14/138 (10%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 R AR A+ L++ D+IG E+++ V+ + + ++ G Sbjct: 39 RSKARKQALDILFEADLIGTDPLEVLAARP-------------GVFTNPVRPFAADLVRG 85 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135 V + +D +++ CL+E W+ +R+ + + R G E++ + P +ISE + ++ Sbjct: 86 VAATQVGLDSVLTDCLSEGWTLARMPRVDRILARLGAFEILHTDT-PNPAVISEAIELSE 144 Query: 136 DFFYGDEPKFINAVLDKV 153 +F D F+N +L V Sbjct: 145 EFSTDDSAPFLNGLLGAV 162 >gi|255284121|ref|ZP_05348676.1| transcription antitermination factor NusB [Bryantella formatexigens DSM 14469] gi|255265295|gb|EET58500.1| transcription antitermination factor NusB [Bryantella formatexigens DSM 14469] Length = 134 Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 27/98 (27%), Positives = 51/98 (52%), Gaps = 1/98 (1%) Query: 58 ESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIE 117 E+ D E+ H + ++ +D +++ ++ W R++ + +ILR E++E Sbjct: 38 EAAPTEKDAEYIFDKFHKIEEKLPQLDERLAAE-SQGWKLGRMNKVDLAILRLAAYEVLE 96 Query: 118 CHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSR 155 +PV V I+E V +A + D P F+N VL K++R Sbjct: 97 DDDIPVGVAINEAVELAKKYGGDDSPSFVNGVLGKIAR 134 >gi|303239904|ref|ZP_07326427.1| NusB antitermination factor [Acetivibrio cellulolyticus CD2] gi|302592614|gb|EFL62339.1| NusB antitermination factor [Acetivibrio cellulolyticus CD2] Length = 141 Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 39/140 (27%), Positives = 68/140 (48%), Gaps = 12/140 (8%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 R AR A++ +YQ++I S E I + L+ E+V + D + ++ G Sbjct: 3 RRAAREIAMKLVYQLEIQKDSREEQIRQT----------LEQENVTEN-DTNYITDVVEG 51 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135 V + ID I ++ W SR+ + SILR + E+ + +P V ++E V +A Sbjct: 52 VFKNLEQIDKTIE-MYSKGWKLSRISKVDLSILRLSIYEISFRNDIPFNVSVNEAVELAK 110 Query: 136 DFFYGDEPKFINAVLDKVSR 155 ++ + FIN +L KVS+ Sbjct: 111 NYSGEESSSFINGILGKVSK 130 >gi|284991570|ref|YP_003410124.1| NusB antitermination factor [Geodermatophilus obscurus DSM 43160] gi|284064815|gb|ADB75753.1| NusB antitermination factor [Geodermatophilus obscurus DSM 43160] Length = 135 Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 42/138 (30%), Positives = 58/138 (42%), Gaps = 14/138 (10%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 R AR AV LY+ D+ G E++ E A + +V L + G Sbjct: 4 RSKARKRAVDVLYEADLRGSDPLELLRERVA---LASPPIPDHAVRL----------VEG 50 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135 V + +D LI WS RL + +ILR V EL+ VP V+I E V +A Sbjct: 51 VAEHAARVDELIDRH-ARGWSIHRLPDVDRAILRMAVFELLWVDDVPDAVVIDEAVELAR 109 Query: 136 DFFYGDEPKFINAVLDKV 153 D P ++N VL V Sbjct: 110 SLSTDDSPAYVNGVLGGV 127 >gi|302879544|ref|YP_003848108.1| NusB antitermination factor [Gallionella capsiferriformans ES-2] gi|302582333|gb|ADL56344.1| NusB antitermination factor [Gallionella capsiferriformans ES-2] Length = 157 Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 40/143 (27%), Positives = 65/143 (45%), Gaps = 16/143 (11%) Query: 14 HRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVII 73 HR AR A+Q +YQ + G TEI + L E D + ++ Sbjct: 20 HR---ARELALQGVYQWRVSGSDATEI-----------EAHLQGEKNLGRYDKPMYSKLL 65 Query: 74 HGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCI 133 GV+ ++ + +L++ L + L + S+L EL VP +V+I+E V + Sbjct: 66 RGVLANQEELQILLTPYLDR--ALDELSTVEFSVLLLAGFELAHQLDVPYKVVINEAVEL 123 Query: 134 AHDFFYGDEPKFINAVLDKVSRK 156 A F D K++N VLDK++ K Sbjct: 124 AKTFGGTDGHKYVNGVLDKLAPK 146 >gi|241894790|ref|ZP_04782086.1| transcription antitermination protein NusB [Weissella paramesenteroides ATCC 33313] gi|241872002|gb|EER75753.1| transcription antitermination protein NusB [Weissella paramesenteroides ATCC 33313] Length = 139 Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 36/133 (27%), Positives = 66/133 (49%), Gaps = 8/133 (6%) Query: 20 RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79 R AA Q+L+ + + T + T D E+ E + DL ++ GV+ + Sbjct: 10 RQAAFQSLFGL---ALNPTADVDTTITQVLVGDPEIAWED-EIPADL---TSVVLGVVAK 62 Query: 80 KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139 + +DL+I+ L+ W+ RL+ ++R + E + VP ++ ++E + +AHDF Sbjct: 63 QDELDLMITDHLSSDWTLDRLNTTDLVLMRLALYE-AKFTDVPAKIAVNEALQLAHDFTD 121 Query: 140 GDEPKFINAVLDK 152 KFIN +L+K Sbjct: 122 DKSRKFINGILNK 134 >gi|307129902|ref|YP_003881918.1| transcription antitermination protein [Dickeya dadantii 3937] gi|306527431|gb|ADM97361.1| transcription antitermination protein [Dickeya dadantii 3937] Length = 139 Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 43/134 (32%), Positives = 64/134 (47%), Gaps = 17/134 (12%) Query: 23 AVQALYQIDIIGCSTTEIISEYETYRFCADTELDV--ESVYLHVDLEWFRVIIHGVMDRK 80 AVQALY + S +I AD EL E VD+ +FR ++ GV + Sbjct: 13 AVQALYSWQL---SKNDI----------ADVELQFLSEQDVKGVDITYFRELLAGVATQA 59 Query: 81 QHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYG 140 + +D ++ L+ + L + +ILR V EL + VP +V I+E + +A F Sbjct: 60 EKLDAQMAPYLSRQ--LDELGQVERAILRLAVYELSKREDVPYKVAINEAIELAKVFGAE 117 Query: 141 DEPKFINAVLDKVS 154 D KF+N VLDK Sbjct: 118 DSHKFVNGVLDKAG 131 >gi|282853858|ref|ZP_06263195.1| transcription antitermination factor NusB [Propionibacterium acnes J139] gi|282583311|gb|EFB88691.1| transcription antitermination factor NusB [Propionibacterium acnes J139] gi|314923552|gb|EFS87383.1| transcription antitermination factor NusB [Propionibacterium acnes HL001PA1] gi|314966598|gb|EFT10697.1| transcription antitermination factor NusB [Propionibacterium acnes HL082PA2] gi|314981523|gb|EFT25617.1| transcription antitermination factor NusB [Propionibacterium acnes HL110PA3] gi|315092187|gb|EFT64163.1| transcription antitermination factor NusB [Propionibacterium acnes HL110PA4] gi|315092880|gb|EFT64856.1| transcription antitermination factor NusB [Propionibacterium acnes HL060PA1] gi|315103598|gb|EFT75574.1| transcription antitermination factor NusB [Propionibacterium acnes HL050PA2] gi|327327421|gb|EGE69197.1| n utilization substance protein B-like protein [Propionibacterium acnes HL103PA1] Length = 261 Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 31/138 (22%), Positives = 64/138 (46%), Gaps = 14/138 (10%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 R AR A+ L++ D+IG E+++ V+ + + ++ G Sbjct: 39 RSKARKQALDILFEADLIGTDPLEVLAARP-------------GVFTNPVRPFAADLVRG 85 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135 V + +D +++ CL+E W+ +R+ + + R G E++ + P +ISE + ++ Sbjct: 86 VTATQVGLDSVLTDCLSEGWTLARMPRVDRILARLGAFEILHTDT-PNPAVISEAIELSE 144 Query: 136 DFFYGDEPKFINAVLDKV 153 +F D F+N +L V Sbjct: 145 EFSTDDSAPFLNGLLGAV 162 >gi|222526903|ref|YP_002571374.1| NusB antitermination factor [Chloroflexus sp. Y-400-fl] gi|254772624|sp|B9LDT2|NUSB_CHLSY RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|222450782|gb|ACM55048.1| NusB antitermination factor [Chloroflexus sp. Y-400-fl] Length = 151 Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 33/145 (22%), Positives = 71/145 (48%), Gaps = 14/145 (9%) Query: 11 KLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFR 70 +L+ +R R+AA+Q L+++D + +++ R D + ES E+ R Sbjct: 5 RLASQRHRVRIAALQILFEVDETDHAIDQVLE-----RRLTDEPMSQESA------EFLR 53 Query: 71 VIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELI--ECHSVPVEVIIS 128 ++ G + + ++D +I W +++ + ++LR + EL+ + P++ +I+ Sbjct: 54 RLVFGAWEHRSYLDRIIEEA-APNWPVAQMPGVDKAVLRIALFELLIDDVERTPIKAVIN 112 Query: 129 EYVCIAHDFFYGDEPKFINAVLDKV 153 E V +A F + +F+N VL V Sbjct: 113 EAVELAKQFGSDNSSRFVNGVLGTV 137 >gi|160934296|ref|ZP_02081683.1| hypothetical protein CLOLEP_03167 [Clostridium leptum DSM 753] gi|156866969|gb|EDO60341.1| hypothetical protein CLOLEP_03167 [Clostridium leptum DSM 753] Length = 134 Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 35/110 (31%), Positives = 57/110 (51%), Gaps = 6/110 (5%) Query: 51 ADTELDVESVYLHVDLE---WFRVIIHGVMDRKQHIDLLISS-CLTEKWSFSRLDMILCS 106 A E VES L D+ + + + HGV + ID +I C+ W+ +RL + S Sbjct: 22 ASLEELVESAQLARDITICGFAQNVFHGVEKHGEEIDGMIEKHCIG--WTKNRLSRVAVS 79 Query: 107 ILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRK 156 +LR V E++ +PV V I+E V IA + ++ F+N VL V+++ Sbjct: 80 VLRTAVYEMLYEEKIPVSVSINEAVEIAKTYGSTEDASFVNGVLGSVAKE 129 >gi|94991121|ref|YP_599221.1| transcription antitermination protein NusB [Streptococcus pyogenes MGAS10270] gi|94544629|gb|ABF34677.1| N utilization substance protein B [Streptococcus pyogenes MGAS10270] Length = 156 Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 42/154 (27%), Positives = 77/154 (50%), Gaps = 21/154 (13%) Query: 2 TIQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYE-TYRFCADTELDVESV 60 + Q++++DL R A QAL+ I++ E+++ + Y + T D + + Sbjct: 10 SFQNSRRDL---------RERAFQALFNIEM----GAELLAASQFAYGYDKVTREDAQVL 56 Query: 61 YLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHS 120 L + + ++ GV + K+ +D LIS+ L + WS RL + ++LR G+ E+ Sbjct: 57 ELPI---FLLSLVTGVNNHKEELDNLISTHLKKGWSLERLTLTDKTLLRLGLFEIKYFDE 113 Query: 121 VPVEVIISEYVCIAHDFFYGDE--PKFINAVLDK 152 P V ++E + +A Y DE KFIN +L + Sbjct: 114 TPDRVALNEIIEVAKK--YSDETSAKFINGLLSQ 145 >gi|163848950|ref|YP_001636994.1| transcription antitermination factor NusB [Chloroflexus aurantiacus J-10-fl] gi|163670239|gb|ABY36605.1| transcription antitermination factor NusB [Chloroflexus aurantiacus J-10-fl] Length = 153 Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 33/145 (22%), Positives = 71/145 (48%), Gaps = 14/145 (9%) Query: 11 KLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFR 70 +L+ +R R+AA+Q L+++D + +++ R D + ES E+ R Sbjct: 7 RLASQRHRVRIAALQILFEVDETDHAIDQVLE-----RRLTDEPMSQESA------EFLR 55 Query: 71 VIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELI--ECHSVPVEVIIS 128 ++ G + + ++D +I W +++ + ++LR + EL+ + P++ +I+ Sbjct: 56 RLVFGAWEHRSYLDRIIEEA-APNWPVAQMPGVDKAVLRIALFELLIDDVERTPIKAVIN 114 Query: 129 EYVCIAHDFFYGDEPKFINAVLDKV 153 E V +A F + +F+N VL V Sbjct: 115 EAVELAKQFGSDNSSRFVNGVLGTV 139 >gi|322515009|ref|ZP_08068019.1| transcription antitermination factor NusB [Actinobacillus ureae ATCC 25976] gi|322118998|gb|EFX91170.1| transcription antitermination factor NusB [Actinobacillus ureae ATCC 25976] Length = 163 Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 47/145 (32%), Positives = 71/145 (48%), Gaps = 14/145 (9%) Query: 10 LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF 69 +K+S RR AR AVQALY + S E+ F D +++ VDL +F Sbjct: 27 MKVSPRRR-ARECAVQALYSWYVSQNSVEEV-----ELSFVTDQDMN------GVDLPYF 74 Query: 70 RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISE 129 R ++ + + ID + L + +D I +ILR EL VP +V+I+E Sbjct: 75 RKLLRSTVLYIEAIDGALRPFLDR--AEDEVDPIERTILRLSAYELKYELDVPYKVVINE 132 Query: 130 YVCIAHDFFYGDEPKFINAVLDKVS 154 + +A F GD K+IN VLDK++ Sbjct: 133 GIEVAKVFGSGDSHKYINGVLDKLA 157 >gi|296125572|ref|YP_003632824.1| NusB antitermination factor [Brachyspira murdochii DSM 12563] gi|296017388|gb|ADG70625.1| NusB antitermination factor [Brachyspira murdochii DSM 12563] Length = 154 Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 46/156 (29%), Positives = 72/156 (46%), Gaps = 13/156 (8%) Query: 4 QDNKKDLKLS--HRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVY 61 ++N KDL LS R AR+ AV +LY +I IS F D ++ E+++ Sbjct: 8 KENIKDLDLSAYGARRQARIYAVMSLYSYEI----NERKISINNILDFDYDKKI-PENIF 62 Query: 62 LHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSV 121 R ++ G + + ID LI + W R+ + SI+R + LI + Sbjct: 63 AFT-----RNLVEGTIKNLERIDSLIEKY-SNNWDIKRIQYVDKSIIRMSIYSLIFLKDI 116 Query: 122 PVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKE 157 P V+I E V IA F D KF+N +LD + ++ Sbjct: 117 PKSVVIDEAVEIAKIFSDKDSYKFVNGILDGIQEED 152 >gi|71911358|ref|YP_282908.1| transcription antitermination protein NusB [Streptococcus pyogenes MGAS5005] gi|71854140|gb|AAZ52163.1| N utilization substance protein B [Streptococcus pyogenes MGAS5005] Length = 150 Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 42/154 (27%), Positives = 77/154 (50%), Gaps = 21/154 (13%) Query: 2 TIQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYE-TYRFCADTELDVESV 60 + Q++++DL R A QAL+ I++ E+++ + Y + T D + + Sbjct: 4 SFQNSRRDL---------RERAFQALFNIEM----GAELLAASQFAYGYDKVTGEDAQVL 50 Query: 61 YLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHS 120 L + + ++ GV + K+ +D LIS+ L + WS RL + ++LR G+ E+ Sbjct: 51 ELPI---FLLSLVTGVNNHKEELDNLISTHLKKGWSLERLTLTDKTLLRLGLFEIKYFDE 107 Query: 121 VPVEVIISEYVCIAHDFFYGDE--PKFINAVLDK 152 P V ++E + +A Y DE KFIN +L + Sbjct: 108 TPDRVALNEIIEVAKK--YSDETSAKFINGLLSQ 139 >gi|302389868|ref|YP_003825689.1| NusB antitermination factor [Thermosediminibacter oceani DSM 16646] gi|302200496|gb|ADL08066.1| NusB antitermination factor [Thermosediminibacter oceani DSM 16646] Length = 154 Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 31/88 (35%), Positives = 51/88 (57%), Gaps = 5/88 (5%) Query: 73 IHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVC 132 ++GV+++K+ ID +I + W RL++ +I+R + E+ +P+ V I+E V Sbjct: 62 VNGVLEKKECIDEIIDEYCVD-WELERLNIADRNIMRLAIYEIFFSDDIPLSVSINEAVE 120 Query: 133 IAHDFFYGDE--PKFINAVLDKVSRKEE 158 IA YGDE PKF+N VL ++R E Sbjct: 121 IAKK--YGDEKSPKFVNGVLGAIARDRE 146 >gi|320352895|ref|YP_004194234.1| NusB antitermination factor [Desulfobulbus propionicus DSM 2032] gi|320121397|gb|ADW16943.1| NusB antitermination factor [Desulfobulbus propionicus DSM 2032] Length = 140 Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 27/88 (30%), Positives = 48/88 (54%), Gaps = 1/88 (1%) Query: 66 LEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEV 125 L + R +I G+ ++ ID L+++ + W R+ ++ +ILR V E+ C P +V Sbjct: 48 LPYGRELILGICRHREEIDALLATH-SHNWRVERMSLVDRNILRIAVFEMRHCDQAPAQV 106 Query: 126 IISEYVCIAHDFFYGDEPKFINAVLDKV 153 I+E + IA + G+ FIN +LD + Sbjct: 107 AINEALEIAKRYSIGESVSFINGILDAI 134 >gi|313673615|ref|YP_004051726.1| nusb antitermination factor [Calditerrivibrio nitroreducens DSM 19672] gi|312940371|gb|ADR19563.1| NusB antitermination factor [Calditerrivibrio nitroreducens DSM 19672] Length = 141 Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 26/84 (30%), Positives = 48/84 (57%), Gaps = 2/84 (2%) Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131 ++ +++ +D LIS L + W +RL M+ ILR + EL E + P++V I +YV Sbjct: 51 LLKKAIEKTVFLDELISKYLKQGWDLNRLPMVDLLILRLAIFELFESND-PIKV-IDDYV 108 Query: 132 CIAHDFFYGDEPKFINAVLDKVSR 155 +A+ + + P +IN +L+K+ Sbjct: 109 TLANKYSEQNSPGYINGILEKIKN 132 >gi|228987373|ref|ZP_04147493.1| N utilization substance protein B [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|229140916|ref|ZP_04269460.1| N utilization substance protein B [Bacillus cereus BDRD-ST26] gi|229157781|ref|ZP_04285856.1| N utilization substance protein B [Bacillus cereus ATCC 4342] gi|229186425|ref|ZP_04313589.1| N utilization substance protein B [Bacillus cereus BGSC 6E1] gi|229198309|ref|ZP_04325016.1| N utilization substance protein B [Bacillus cereus m1293] gi|228585188|gb|EEK43299.1| N utilization substance protein B [Bacillus cereus m1293] gi|228597052|gb|EEK54708.1| N utilization substance protein B [Bacillus cereus BGSC 6E1] gi|228625738|gb|EEK82490.1| N utilization substance protein B [Bacillus cereus ATCC 4342] gi|228642492|gb|EEK98779.1| N utilization substance protein B [Bacillus cereus BDRD-ST26] gi|228772345|gb|EEM20791.1| N utilization substance protein B [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] Length = 120 Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 43/132 (32%), Positives = 63/132 (47%), Gaps = 18/132 (13%) Query: 24 VQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHI 83 +QALYQ+DI G E E +T + E E+ ++ G ++ K+ I Sbjct: 1 MQALYQMDITG--------ELEPKVAVENTLDEGEETN-----EFLESLVVGFVENKEVI 47 Query: 84 DLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEP 143 D I L +KW R+ ++ SILR V E+ +P V I+E + IA F GDE Sbjct: 48 DEAIRQNL-KKWKLERISIVDRSILRVAVYEMKYMEEIPHNVTINEAIEIAKTF--GDEE 104 Query: 144 --KFINAVLDKV 153 +FIN VL + Sbjct: 105 SRRFINGVLSNI 116 >gi|311108723|ref|YP_003981576.1| transcription antitermination factor NusB [Achromobacter xylosoxidans A8] gi|310763412|gb|ADP18861.1| transcription antitermination factor NusB [Achromobacter xylosoxidans A8] Length = 164 Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 42/145 (28%), Positives = 65/145 (44%), Gaps = 20/145 (13%) Query: 24 VQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR---- 79 +Q +Y + G T+ E + + DTE + D +WF+ ++HGV+ Sbjct: 32 LQGVYAWLLRGGEGTQDAGEIDAH--LRDTE-----DFSEADAQWFKTLLHGVLREAPAL 84 Query: 80 KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139 +Q + L E L + IL G ELI VP +V I+E V +A F Sbjct: 85 RQRFTPYVDRPLAE------LSPVEHGILLIGSFELIHHVEVPYKVAINEAVELAKSFGG 138 Query: 140 GDEPKFINAVLDKVS---RKEEIKR 161 D KF+N VLDK++ R E+ + Sbjct: 139 TDGFKFVNGVLDKLAADVRANEVNK 163 >gi|302380357|ref|ZP_07268827.1| transcription antitermination factor NusB [Finegoldia magna ACS-171-V-Col3] gi|302311847|gb|EFK93858.1| transcription antitermination factor NusB [Finegoldia magna ACS-171-V-Col3] Length = 137 Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 38/145 (26%), Positives = 75/145 (51%), Gaps = 16/145 (11%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 R +R +A+Q +Y++++ + I E FC ++ D+E+F+ I+ Sbjct: 3 RRQSRKSAMQLIYEMNMNEDYDKQRIEE-----FCKYQNIN------KNDIEFFKEIVLN 51 Query: 76 VMDRKQHIDLLIS--SCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCI 133 + +HID +++ T++W+ R++ + SIL+ GV E++ S P V I+E V + Sbjct: 52 FI---EHIDDIVNIIENNTKQWNLDRINKLDLSILQVGVCEILYVESTPDSVAINEAVEL 108 Query: 134 AHDFFYGDEPKFINAVLDKVSRKEE 158 A ++ FIN +L V +++E Sbjct: 109 AKEYSTEKSYSFINGILGSVLKRKE 133 >gi|210615789|ref|ZP_03290770.1| hypothetical protein CLONEX_02988 [Clostridium nexile DSM 1787] gi|210150125|gb|EEA81134.1| hypothetical protein CLONEX_02988 [Clostridium nexile DSM 1787] Length = 132 Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 28/80 (35%), Positives = 45/80 (56%), Gaps = 1/80 (1%) Query: 75 GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134 V+D+K+ ID L++ T W SR++ + +ILR V E+ VP V I+E V +A Sbjct: 53 AVVDKKEEIDGLLNEYTT-GWKTSRMNRVDLTILRLAVYEMKWDEEVPTGVAINEAVELA 111 Query: 135 HDFFYGDEPKFINAVLDKVS 154 + + P F+N VL K++ Sbjct: 112 KKYSSDEGPSFVNGVLAKLA 131 >gi|304413734|ref|ZP_07395178.1| transcription termination factor [Candidatus Regiella insecticola LSR1] gi|304283825|gb|EFL92219.1| transcription termination factor [Candidatus Regiella insecticola LSR1] Length = 182 Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 35/125 (28%), Positives = 64/125 (51%), Gaps = 12/125 (9%) Query: 56 DVESVYL------HVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILR 109 D++S +L VD+ +F ++ GV +D L++ L+ + L I +ILR Sbjct: 29 DIQSYFLSEQDMKEVDINYFGQLLSGVAVDTATLDRLMAPYLSRQ--IEDLGQIEKAILR 86 Query: 110 AGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVS----RKEEIKRSGCV 165 V EL + +P +V+I+E + +A F D KF+N VLDK++ +++++ S + Sbjct: 87 LAVFELSQRDDIPYKVVINEAIELAKIFGAEDSHKFVNGVLDKIAPIIRKRKQLNTSQVI 146 Query: 166 SAITQ 170 Q Sbjct: 147 PTTLQ 151 >gi|163790200|ref|ZP_02184633.1| transcription antitermination protein NusB [Carnobacterium sp. AT7] gi|159874475|gb|EDP68546.1| transcription antitermination protein NusB [Carnobacterium sp. AT7] Length = 147 Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 42/140 (30%), Positives = 70/140 (50%), Gaps = 14/140 (10%) Query: 15 RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELD----VESVYLHVDLEWFR 70 RR I R A+Q+L+Q+ S E +S+ E + +E D VE+V + + Sbjct: 5 RRDI-REKALQSLFQL-----SVNEDLSKEEAMQHALISENDLIDEVETVLVP---SYLD 55 Query: 71 VIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEY 130 +++ GVM+++ ID I + L E WS +RL I+R + E++ VP V ++E Sbjct: 56 MLVSGVMEKQDEIDEKIKTHL-ENWSLNRLAKTDLIIIRVAIFEMMYVSDVPDRVALNEA 114 Query: 131 VCIAHDFFYGDEPKFINAVL 150 + I + KF+N VL Sbjct: 115 LEITKKYSDEKSRKFVNGVL 134 >gi|119390836|sp|Q1J532|NUSB_STRPF RecName: Full=N utilization substance protein B homolog; Short=Protein nusB Length = 150 Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 42/154 (27%), Positives = 77/154 (50%), Gaps = 21/154 (13%) Query: 2 TIQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYE-TYRFCADTELDVESV 60 + Q++++DL R A QAL+ I++ E+++ + Y + T D + + Sbjct: 4 SFQNSRRDL---------RERAFQALFNIEM----GAELLAASQFAYGYDKVTGEDAQVL 50 Query: 61 YLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHS 120 L + + ++ GV + K+ +D LIS+ L + WS RL + ++LR G+ E+ Sbjct: 51 ELPI---FLLSLVMGVNNHKEELDNLISTHLKKGWSLERLTLTDKTLLRLGLFEIKYFDE 107 Query: 121 VPVEVIISEYVCIAHDFFYGDE--PKFINAVLDK 152 P V ++E + +A Y DE KFIN +L + Sbjct: 108 TPDRVALNEIIEVAKK--YSDETSAKFINGLLSQ 139 >gi|301330723|ref|ZP_07223325.1| transcription antitermination factor NusB [Escherichia coli MS 78-1] gi|300843384|gb|EFK71144.1| transcription antitermination factor NusB [Escherichia coli MS 78-1] Length = 139 Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 41/132 (31%), Positives = 64/132 (48%), Gaps = 13/132 (9%) Query: 23 AVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQH 82 AVQALY + ++ Y+F A E DV+ V D+ +FR ++ GV Sbjct: 13 AVQALYSWQLSQNDIADV-----EYQFLA--EQDVKDV----DVLYFRELLAGVATNTAS 61 Query: 83 IDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDE 142 +D L+ L+ L + ++LR + EL + VP +V I+E + +A F D Sbjct: 62 LDGLMKPYLSR--LLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDS 119 Query: 143 PKFINAVLDKVS 154 KF+N VLDK + Sbjct: 120 HKFVNGVLDKAA 131 >gi|19746754|ref|NP_607890.1| transcription antitermination protein NusB [Streptococcus pyogenes MGAS8232] gi|21911108|ref|NP_665376.1| transcription antitermination protein NusB [Streptococcus pyogenes MGAS315] gi|139473181|ref|YP_001127896.1| transcription antitermination protein NusB [Streptococcus pyogenes str. Manfredo] gi|54037927|sp|P65585|NUSB_STRP8 RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|54041677|sp|P65584|NUSB_STRP3 RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|119390833|sp|Q1JA39|NUSB_STRPB RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|119390834|sp|Q1JK87|NUSB_STRPC RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|119390837|sp|Q48RL8|NUSB_STRPM RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|166215723|sp|A2RCS4|NUSB_STRPG RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|19748985|gb|AAL98389.1| putative transcriptional terminator [Streptococcus pyogenes MGAS8232] gi|21905318|gb|AAM80179.1| putative transcriptional terminator [Streptococcus pyogenes MGAS315] gi|134271427|emb|CAM29647.1| N utilization substance protein B homolog (NusB protein) [Streptococcus pyogenes str. Manfredo] Length = 150 Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 42/154 (27%), Positives = 77/154 (50%), Gaps = 21/154 (13%) Query: 2 TIQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYE-TYRFCADTELDVESV 60 + Q++++DL R A QAL+ I++ E+++ + Y + T D + + Sbjct: 4 SFQNSRRDL---------RERAFQALFNIEM----GAELLAASQFAYGYDKVTGEDAQVL 50 Query: 61 YLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHS 120 L + + ++ GV + K+ +D LIS+ L + WS RL + ++LR G+ E+ Sbjct: 51 ELPI---FLLSLVTGVNNHKEELDNLISTHLKKGWSLERLTLTDKTLLRLGLFEIKYFDE 107 Query: 121 VPVEVIISEYVCIAHDFFYGDE--PKFINAVLDK 152 P V ++E + +A Y DE KFIN +L + Sbjct: 108 TPDRVALNEIIEVAKK--YSDETSAKFINGLLSQ 139 >gi|325578284|ref|ZP_08148419.1| transcription termination/antitermination factor NusB [Haemophilus parainfluenzae ATCC 33392] gi|325160020|gb|EGC72149.1| transcription termination/antitermination factor NusB [Haemophilus parainfluenzae ATCC 33392] Length = 145 Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 46/152 (30%), Positives = 69/152 (45%), Gaps = 13/152 (8%) Query: 3 IQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYL 62 + D K+ +K R AR AVQALY + G + ++ F D +L Sbjct: 1 MTDKKEPVKKVSPRRRARECAVQALYSWALSGNAPEQV-----ELTFVVDQDLK------ 49 Query: 63 HVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVP 122 VD +F + + + +D +S L + LD I +ILR V EL VP Sbjct: 50 GVDKPYFSRLFRQTVANVEAVDFSMSHYLDR--ALDELDPIERAILRLAVYELQFEPDVP 107 Query: 123 VEVIISEYVCIAHDFFYGDEPKFINAVLDKVS 154 +V I+E + +A F + K+IN VLDKV+ Sbjct: 108 YKVAINEAIEVAKVFGADESHKYINGVLDKVA 139 >gi|331002443|ref|ZP_08325961.1| transcription antitermination factor NusB [Lachnospiraceae oral taxon 107 str. F0167] gi|330410259|gb|EGG89693.1| transcription antitermination factor NusB [Lachnospiraceae oral taxon 107 str. F0167] Length = 146 Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 34/106 (32%), Positives = 56/106 (52%), Gaps = 1/106 (0%) Query: 52 DTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAG 111 D EL ++ + D+E+ + VMD K ID +IS L++ W R+ + +ILR Sbjct: 42 DDELIHDANFSDGDIEYIKSKAMLVMDNKSEIDKIISE-LSQGWKLERIGRVERNILRLA 100 Query: 112 VLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKE 157 + E+ +PV V I+E V +A + + F+NA+L KV +E Sbjct: 101 IAEMKYDDDIPVSVAINEAVELAKAYGRDESYSFVNAILSKVGIEE 146 >gi|294055107|ref|YP_003548765.1| NusB antitermination factor [Coraliomargarita akajimensis DSM 45221] gi|293614440|gb|ADE54595.1| NusB antitermination factor [Coraliomargarita akajimensis DSM 45221] Length = 153 Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 33/91 (36%), Positives = 49/91 (53%), Gaps = 3/91 (3%) Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131 +IHG +D ID I S W+F R+ I SILR + EL+ +P V I+E + Sbjct: 60 LIHGALDNIAKIDDEIMSH-ANNWTFDRIAKIDLSILRLAIYELLYRTDIPPIVSINEAI 118 Query: 132 CIAHDFFYGDEPKFINAVLDKVSRKEEIKRS 162 ++ F D +FIN +LDK+ K++I R Sbjct: 119 DLSKVFSNPDSKRFINGILDKM--KDKINRP 147 >gi|147677514|ref|YP_001211729.1| transcription termination factor [Pelotomaculum thermopropionicum SI] gi|189035895|sp|A5D319|NUSB_PELTS RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|146273611|dbj|BAF59360.1| transcription termination factor [Pelotomaculum thermopropionicum SI] Length = 144 Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 35/147 (23%), Positives = 72/147 (48%), Gaps = 14/147 (9%) Query: 12 LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71 +S R+ AR A+Q L+Q+D+ G E +R +D L E+ R+ Sbjct: 1 MSRRQ--ARERALQILFQVDVGGADPGE------AFRL-----MDEGFGELKKYQEFARL 47 Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131 ++ G ++ ID +I+ +++ W+ +R+ + +I+R + E+ C +P V ++E V Sbjct: 48 LVGGTLENLAAIDRVIAG-VSKDWNINRMANVDRNIIRMALYEIFFCEDIPYSVSVNEAV 106 Query: 132 CIAHDFFYGDEPKFINAVLDKVSRKEE 158 + + + +FIN +L ++ E Sbjct: 107 ELGKTYGGEESGRFINGILGRIVESPE 133 >gi|299822999|ref|ZP_07054885.1| transcription antitermination factor NusB [Listeria grayi DSM 20601] gi|299816528|gb|EFI83766.1| transcription antitermination factor NusB [Listeria grayi DSM 20601] Length = 130 Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 41/138 (29%), Positives = 65/138 (47%), Gaps = 21/138 (15%) Query: 15 RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74 +R AR A+QAL+Q+++ S + +S +V ++ + ++ Sbjct: 2 KRREAREVALQALFQMELNEMSFEQAVS----------------NVMPEEQDDYVKKLVS 45 Query: 75 GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134 GV K ID I + L + W RL+ + SILR V E+ C +P V ++E + I+ Sbjct: 46 GVDTHKADIDTAIEAHL-DNWRKDRLNKVDLSILRLSVFEMKYCEDIPDRVSLNEAIEIS 104 Query: 135 HDFFYGDEP--KFINAVL 150 Y DE KFIN VL Sbjct: 105 K--VYSDEKSSKFINGVL 120 >gi|210134202|ref|YP_002300641.1| transcription antitermination protein NusB [Helicobacter pylori P12] gi|238055353|sp|B6JPA0|NUSB_HELP2 RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|210132170|gb|ACJ07161.1| N utilization substance protein B [Helicobacter pylori P12] Length = 138 Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 42/141 (29%), Positives = 68/141 (48%), Gaps = 13/141 (9%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 R AR A V+ LY + S E + A + L+ + + + L + + +G Sbjct: 4 RTQARGAVVELLYAFE----------SGNEEIKKIASSMLEEKKIK-NNQLAFALSLFNG 52 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135 V++R ID LI L + W F RL + +ILR G E I +II+E + + Sbjct: 53 VLERINEIDALIEPHLKD-WDFKRLGSMEKAILRLGAYE-IGFTPTQNPIIINECIELGK 110 Query: 136 DFFYGDEPKFINAVLDKVSRK 156 + + PKF+NA+LD +S+K Sbjct: 111 LYAEPNTPKFLNAILDSLSKK 131 >gi|302561734|ref|ZP_07314076.1| transcription antitermination factor NusB [Streptomyces griseoflavus Tu4000] gi|302479352|gb|EFL42445.1| transcription antitermination factor NusB [Streptomyces griseoflavus Tu4000] Length = 143 Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 37/147 (25%), Positives = 66/147 (44%), Gaps = 12/147 (8%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 R AR A Q +++ D G +++++ + + V + ++ G Sbjct: 4 RNTARKRAFQIIFEGDQRGAEVLTVLADWIRHARSDTRQPPVSEYTMQ--------LVEG 55 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135 + + ID LI + W+ R+ ++ SILR G ELI P V++ E V +A Sbjct: 56 YAEHAKRIDELIGQY-SVGWTLDRMPVVDRSILRLGAYELIWVDETPDAVVLDEMVQLAK 114 Query: 136 DFFYGDEPKFINAVLDKVSRKEEIKRS 162 +F + P F+N +L R +E+K S Sbjct: 115 EFSTDESPSFVNGLL---GRLKELKPS 138 >gi|324992055|gb|EGC23977.1| N utilization substance protein B [Streptococcus sanguinis SK405] gi|324994148|gb|EGC26062.1| N utilization substance protein B [Streptococcus sanguinis SK678] gi|327459357|gb|EGF05703.1| N utilization substance protein B [Streptococcus sanguinis SK1] gi|327490573|gb|EGF22354.1| N utilization substance protein B [Streptococcus sanguinis SK1058] Length = 143 Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 44/150 (29%), Positives = 72/150 (48%), Gaps = 19/150 (12%) Query: 9 DLKLSHRRGIARLAAVQAL----YQIDII-GCSTTEIISEYETYRFCADTELDVESVYLH 63 D+ L RRG+ R A QAL Y+ D++ C Y + D E D + Sbjct: 3 DILLESRRGL-RQRAFQALMSLEYEGDLVEACRFA--------YSYDKDEEADKAA---E 50 Query: 64 VDLEWFRV-IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVP 122 D+ F + ++ GV+ K +D I+ L + W+ RL ++ +ILR G+ E+ E + P Sbjct: 51 ADIPAFLLNLVSGVVQSKDDLDKKIAQHLKKGWTVDRLTLVEKNILRLGIFEITEFDT-P 109 Query: 123 VEVIISEYVCIAHDFFYGDEPKFINAVLDK 152 V ++E + ++ F KFIN +L K Sbjct: 110 QLVAVNEAIELSKQFSDEKSSKFINGILSK 139 >gi|187477080|ref|YP_785104.1| transcription antitermination protein NusB [Bordetella avium 197N] gi|115421666|emb|CAJ48176.1| N utilization substance protein B [Bordetella avium 197N] Length = 156 Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 39/136 (28%), Positives = 62/136 (45%), Gaps = 17/136 (12%) Query: 23 AVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR--- 79 A+Q +Y + G T+ E + + A+ + D +WF+ ++HGV+ Sbjct: 18 ALQGVYAWLLRGGQDTQDAGEIDAHLRDAED-------FSEADAQWFKTLLHGVLREAPT 70 Query: 80 -KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFF 138 ++H I L E L + IL G EL+ VP +V I+E V +A F Sbjct: 71 LREHFTPYIDRPLAE------LSPVEHGILLIGSYELVHHVEVPYKVAINEAVELAKSFG 124 Query: 139 YGDEPKFINAVLDKVS 154 D KF+N VLDK++ Sbjct: 125 GTDGFKFVNGVLDKLA 140 >gi|85058631|ref|YP_454333.1| transcription antitermination protein NusB [Sodalis glossinidius str. 'morsitans'] gi|119390825|sp|Q2NV97|NUSB_SODGM RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|84779151|dbj|BAE73928.1| N utilization substance protein B [Sodalis glossinidius str. 'morsitans'] Length = 139 Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 38/134 (28%), Positives = 64/134 (47%), Gaps = 13/134 (9%) Query: 23 AVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQH 82 AVQALY + +I ++ + +D VD+ +FR + G Q Sbjct: 13 AVQALYSWQLSHNDIADIEVQFLAEQDTSD-----------VDVAYFRDLYAGAATNAQE 61 Query: 83 IDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDE 142 +D L++ L+ + L + ++LR + EL + VP +V I+E + +A F + Sbjct: 62 LDKLMAPYLSRQ--LEELGHVERAVLRIALFELSKRQDVPYKVAINEAIELAKTFGAEES 119 Query: 143 PKFINAVLDKVSRK 156 KFIN VLDKV+ + Sbjct: 120 HKFINGVLDKVAPQ 133 >gi|209559915|ref|YP_002286387.1| transcription antitermination protein NusB [Streptococcus pyogenes NZ131] gi|238055478|sp|B5XI30|NUSB_STRPZ RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|209541116|gb|ACI61692.1| N utilization substance B-like protein [Streptococcus pyogenes NZ131] Length = 150 Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 42/154 (27%), Positives = 77/154 (50%), Gaps = 21/154 (13%) Query: 2 TIQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYE-TYRFCADTELDVESV 60 + Q++++DL R A QAL+ I++ E+++ + Y + T D + + Sbjct: 4 SFQNSRRDL---------RERAFQALFNIEM----GAELLAASQFAYGYDKVTGEDAQVL 50 Query: 61 YLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHS 120 L + + ++ GV + K+ +D LIS+ L + WS RL + ++LR G+ E+ Sbjct: 51 ELPI---FLLSLVTGVNNHKEELDNLISTHLKKGWSLERLTLTDKTLLRLGLFEIKYFDE 107 Query: 121 VPVEVIISEYVCIAHDFFYGDE--PKFINAVLDK 152 P V ++E + +A Y DE KFIN +L + Sbjct: 108 TPDRVALNEIIEVAKK--YSDETSAKFINGLLSQ 139 >gi|297195528|ref|ZP_06912926.1| transcription antitermination protein NusB [Streptomyces pristinaespiralis ATCC 25486] gi|297152834|gb|EFH32015.1| transcription antitermination protein NusB [Streptomyces pristinaespiralis ATCC 25486] Length = 142 Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 36/137 (26%), Positives = 62/137 (45%), Gaps = 9/137 (6%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 R AR A Q L++ D G + +++++ R E +DL + G Sbjct: 4 RNKARKRAFQILFEADQRGATVHTVLADW--VRHARTDERQPPVAEYTMDL------VEG 55 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135 + ID LI++ W+ R+ ++ +ILR G EL+ P V+I E V +A Sbjct: 56 YAEHADRIDELIATYAV-GWTIDRMPVVDRNILRLGAYELVWKDETPDAVVIDEAVQLAK 114 Query: 136 DFFYGDEPKFINAVLDK 152 +F + P F+N +L + Sbjct: 115 EFSTDESPAFVNGLLGR 131 >gi|306826738|ref|ZP_07460040.1| transcription antitermination factor NusB [Streptococcus pyogenes ATCC 10782] gi|68052494|sp|Q5XA94|NUSB_STRP6 RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|304431027|gb|EFM34034.1| transcription antitermination factor NusB [Streptococcus pyogenes ATCC 10782] Length = 150 Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 42/154 (27%), Positives = 77/154 (50%), Gaps = 21/154 (13%) Query: 2 TIQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYE-TYRFCADTELDVESV 60 + Q++++DL R A QAL+ I+ + E+++ + Y + T D + + Sbjct: 4 SFQNSRRDL---------RERAFQALFNIE----TGAELLAASQFAYGYDKVTGEDAQVL 50 Query: 61 YLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHS 120 L + + ++ GV + K+ +D LIS+ L + WS RL + ++LR G+ E+ Sbjct: 51 ELPI---FLLSLVTGVNNHKEELDNLISTHLKKGWSLERLTLTDKTLLRLGLFEIKYFDE 107 Query: 121 VPVEVIISEYVCIAHDFFYGDE--PKFINAVLDK 152 P V ++E + +A Y DE KFIN +L + Sbjct: 108 TPDRVALNEIIEVAKK--YSDETSAKFINGLLSQ 139 >gi|108562426|ref|YP_626742.1| transcription antitermination protein NusB [Helicobacter pylori HPAG1] gi|208433977|ref|YP_002265643.1| N utilization substance protein B [Helicobacter pylori G27] gi|217031745|ref|ZP_03437249.1| hypothetical protein HPB128_155g58 [Helicobacter pylori B128] gi|298737115|ref|YP_003729645.1| N utilization substance protein B [Helicobacter pylori B8] gi|308182189|ref|YP_003926316.1| transcription antitermination protein NusB [Helicobacter pylori PeCan4] gi|119390776|sp|Q1CVF4|NUSB_HELPH RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|238055475|sp|B5Z6D7|NUSB_HELPG RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|107836199|gb|ABF84068.1| N utilization substance protein B [Helicobacter pylori HPAG1] gi|208431906|gb|ACI26777.1| N utilization substance protein B [Helicobacter pylori G27] gi|216946592|gb|EEC25192.1| hypothetical protein HPB128_155g58 [Helicobacter pylori B128] gi|298356309|emb|CBI67181.1| N utilization substance protein B [Helicobacter pylori B8] gi|308064374|gb|ADO06266.1| transcription antitermination protein NusB [Helicobacter pylori PeCan4] gi|317179797|dbj|BAJ57583.1| transcription antitermination protein NusB [Helicobacter pylori F32] Length = 138 Score = 52.0 bits (123), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 42/141 (29%), Positives = 68/141 (48%), Gaps = 13/141 (9%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 R AR A V+ LY + S E + A + L+ + + + L + + +G Sbjct: 4 RTQARGAVVELLYAFE----------SGNEEIKKIASSMLEEKKIK-NNQLAFALSLFNG 52 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135 V++R ID LI L + W F RL + +ILR G E I +II+E + + Sbjct: 53 VLERINEIDALIEPHLKD-WDFKRLGSMEKAILRLGAYE-IGFTPTQNPIIINECIELGK 110 Query: 136 DFFYGDEPKFINAVLDKVSRK 156 + + PKF+NA+LD +S+K Sbjct: 111 LYAEPNTPKFLNAILDSLSKK 131 >gi|300741572|ref|ZP_07071593.1| transcription antitermination factor NusB [Rothia dentocariosa M567] gi|311113665|ref|YP_003984887.1| transcription antitermination factor NusB [Rothia dentocariosa ATCC 17931] gi|300380757|gb|EFJ77319.1| transcription antitermination factor NusB [Rothia dentocariosa M567] gi|310945159|gb|ADP41453.1| transcription antitermination factor NusB [Rothia dentocariosa ATCC 17931] Length = 136 Score = 52.0 bits (123), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 42/138 (30%), Positives = 61/138 (44%), Gaps = 14/138 (10%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 R ARL AV+ L++ D +II + R ++ S Y I+ G Sbjct: 4 RTKARLRAVEVLFEAD---QRQEDIIDVLKRRRLHTAAQI---SAYAEE-------IVRG 50 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135 V + I + + + WSF R+ + ILR G EL+ VP V ISE +A Sbjct: 51 VREHDDEIREYLETYARD-WSFERMPAVDRVILRIGAWELLYNDDVPDAVAISEATGLAR 109 Query: 136 DFFYGDEPKFINAVLDKV 153 D PKF+N +LDK+ Sbjct: 110 VLSTNDSPKFVNGLLDKL 127 >gi|167855582|ref|ZP_02478342.1| transcription antitermination protein NusB [Haemophilus parasuis 29755] gi|167853273|gb|EDS24527.1| transcription antitermination protein NusB [Haemophilus parasuis 29755] Length = 137 Score = 52.0 bits (123), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 46/145 (31%), Positives = 71/145 (48%), Gaps = 14/145 (9%) Query: 10 LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF 69 +K+S RR AR AVQALY I S ++ F D ++ VD+ +F Sbjct: 1 MKVSPRRR-ARECAVQALYSWYISQNSIEQV-----ELAFVTDQDMQ------GVDMPYF 48 Query: 70 RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISE 129 R ++ G ++ ID ++ L + + LD I +ILR EL VP +V I+E Sbjct: 49 RKLLRGTVENVDVIDDILRPYLDR--ADNELDPIERTILRLASYELKFELDVPYKVAINE 106 Query: 130 YVCIAHDFFYGDEPKFINAVLDKVS 154 + +A F D K++N VLDK++ Sbjct: 107 AIEVAKVFGSDDSHKYVNGVLDKLA 131 >gi|56461241|ref|YP_156522.1| transcription termination factor NusB [Idiomarina loihiensis L2TR] gi|81599971|sp|Q5QVE5|NUSB_IDILO RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|56180251|gb|AAV82973.1| Transcription termination factor NusB [Idiomarina loihiensis L2TR] Length = 139 Score = 52.0 bits (123), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 42/144 (29%), Positives = 69/144 (47%), Gaps = 14/144 (9%) Query: 10 LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF 69 +K + RR AR AVQA+Y + S ++I +++ T E+ VD+++F Sbjct: 1 MKPAARRK-ARKLAVQAIYSWQLSQNSFSDIEAQFLT-----------ENDTSKVDVDYF 48 Query: 70 RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISE 129 ++ GV + +D + L LD I ++LR EL E VP +V I+E Sbjct: 49 LELVRGVGGHYRTLDEALEPFLDR--PIKELDPIELAVLRLAAYELRERVDVPYKVAINE 106 Query: 130 YVCIAHDFFYGDEPKFINAVLDKV 153 + +A F + +F+N VLDK Sbjct: 107 AIELAKSFGADESHRFVNGVLDKA 130 >gi|59711311|ref|YP_204087.1| transcription antitermination protein NusB [Vibrio fischeri ES114] gi|197335476|ref|YP_002155467.1| transcription antitermination factor NusB [Vibrio fischeri MJ11] gi|31076819|sp|Q8G9G3|NUSB_VIBFI RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|75431770|sp|Q5E6Z7|NUSB_VIBF1 RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|238690266|sp|B5FBF9|NUSB_VIBFM RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|26522774|dbj|BAC44861.1| NusB protein [Vibrio fischeri] gi|59479412|gb|AAW85199.1| transcription antitermination factor NusB [Vibrio fischeri ES114] gi|197316966|gb|ACH66413.1| transcription antitermination factor NusB [Vibrio fischeri MJ11] Length = 155 Score = 52.0 bits (123), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 40/148 (27%), Positives = 69/148 (46%), Gaps = 6/148 (4%) Query: 10 LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHV---DL 66 +K + RR AR A+QA+Y + + +I ++ T + E L D+ Sbjct: 5 VKPAARRN-ARQFALQAIYSWQLSKENVADIEEQFLTAEKYDEEEHHANEPKLQTPETDV 63 Query: 67 EWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVI 126 +FR + GV +D + L+ LD + ++LR + E++ VP +V+ Sbjct: 64 AYFRDLFSGVALNHMKLDGKMRPYLSR--PLQDLDQMELALLRMSIYEMMNRDDVPYKVV 121 Query: 127 ISEYVCIAHDFFYGDEPKFINAVLDKVS 154 I+E + +A F D KF+N VLDK + Sbjct: 122 INEAIELAKVFAAEDSHKFVNGVLDKAA 149 >gi|317013425|gb|ADU80861.1| transcription antitermination protein NusB [Helicobacter pylori Gambia94/24] Length = 138 Score = 52.0 bits (123), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 42/141 (29%), Positives = 68/141 (48%), Gaps = 13/141 (9%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 R AR A V+ LY + S E + A + L+ + + + L + + +G Sbjct: 4 RTQARGAVVELLYAFE----------SGNEEIKKIASSMLEEKKIK-NNQLAFALSLFNG 52 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135 V++R ID LI L + W F RL + +ILR G E I +II+E + + Sbjct: 53 VLERINEIDALIEPHLKD-WDFKRLGSMEKAILRLGAYE-IGFTPTQNPIIINECIELGK 110 Query: 136 DFFYGDEPKFINAVLDKVSRK 156 + + PKF+NA+LD +S+K Sbjct: 111 LYAEPNTPKFLNAILDSLSKK 131 >gi|307720293|ref|YP_003891433.1| NusB antitermination factor [Sulfurimonas autotrophica DSM 16294] gi|306978386|gb|ADN08421.1| NusB antitermination factor [Sulfurimonas autotrophica DSM 16294] Length = 135 Score = 52.0 bits (123), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 43/145 (29%), Positives = 65/145 (44%), Gaps = 13/145 (8%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 R AR+A V LY D+ +T+E +E + + + D + + G Sbjct: 4 RQQARMAVVSLLYAYDLGNGNTSEHSNEILEEKKIRNKQKD-----------FALGLYEG 52 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135 VM+ + ID I L E W F RL I + LR E++ + V+I+E V I Sbjct: 53 VMEHIEEIDKAIVEHLKE-WDFERLGAIERATLRLATYEIL-FGELDSAVVINEAVEITK 110 Query: 136 DFFYGDEPKFINAVLDKVSRKEEIK 160 F PKFIN VLD +++ + K Sbjct: 111 SFGTEQSPKFINGVLDAIAKDHKAK 135 >gi|295111308|emb|CBL28058.1| transcription antitermination factor NusB [Synergistetes bacterium SGP1] Length = 180 Score = 52.0 bits (123), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 41/146 (28%), Positives = 71/146 (48%), Gaps = 12/146 (8%) Query: 23 AVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQH 82 AVQ LY ++ C + + E A++ + E + E+ R ++ G R+ Sbjct: 34 AVQFLYSME---CGPGQDLEEALELFLGAESCAEAEPPAVK---EYCRALVRGTWSRRTE 87 Query: 83 IDLLISSCLTEKWSFSRLDMILCSILRAGVLE-LIECHSVPVEVIISEYVCIAHDFFYGD 141 +D ++ S +T W R+ + ++LR V E ++C ++P + ISE V +A F D Sbjct: 88 VDEVLLSVVT-NWRPERMVAVDRAVLRLAVFEGFLDC-ALPFKSAISEAVNLARSFGTED 145 Query: 142 EPKFINAVLDKVSRK---EEIKRSGC 164 +F+N VL +V R+ EE K G Sbjct: 146 SARFVNGVLARVVRRLIPEERKEGGA 171 >gi|71904194|ref|YP_280997.1| transcription antitermination protein NusB [Streptococcus pyogenes MGAS6180] gi|94989179|ref|YP_597280.1| transcription antitermination protein NusB [Streptococcus pyogenes MGAS9429] gi|94993067|ref|YP_601166.1| transcription antitermination protein NusB [Streptococcus pyogenes MGAS2096] gi|71803289|gb|AAX72642.1| N utilization substance protein B [Streptococcus pyogenes MGAS6180] gi|94542687|gb|ABF32736.1| N utilization substance protein B [Streptococcus pyogenes MGAS9429] gi|94546575|gb|ABF36622.1| N utilization substance protein B [Streptococcus pyogenes MGAS2096] Length = 156 Score = 52.0 bits (123), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 42/154 (27%), Positives = 77/154 (50%), Gaps = 21/154 (13%) Query: 2 TIQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYE-TYRFCADTELDVESV 60 + Q++++DL R A QAL+ I++ E+++ + Y + T D + + Sbjct: 10 SFQNSRRDL---------RERAFQALFNIEM----GAELLAASQFAYGYDKVTGEDAQVL 56 Query: 61 YLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHS 120 L + + ++ GV + K+ +D LIS+ L + WS RL + ++LR G+ E+ Sbjct: 57 ELPI---FLLSLVTGVNNHKEELDNLISTHLKKGWSLERLTLTDKTLLRLGLFEIKYFDE 113 Query: 121 VPVEVIISEYVCIAHDFFYGDE--PKFINAVLDK 152 P V ++E + +A Y DE KFIN +L + Sbjct: 114 TPDRVALNEIIEVAKK--YSDETSAKFINGLLSQ 145 >gi|32034438|ref|ZP_00134620.1| COG0781: Transcription termination factor [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|126207689|ref|YP_001052914.1| transcription antitermination protein NusB [Actinobacillus pleuropneumoniae L20] gi|165975657|ref|YP_001651250.1| transcription antitermination protein NusB [Actinobacillus pleuropneumoniae serovar 3 str. JL03] gi|190149473|ref|YP_001967998.1| transcription antitermination protein NusB [Actinobacillus pleuropneumoniae serovar 7 str. AP76] gi|307245014|ref|ZP_07527111.1| N utilization substance protein B [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|307247188|ref|ZP_07529239.1| N utilization substance protein B [Actinobacillus pleuropneumoniae serovar 2 str. S1536] gi|307249415|ref|ZP_07531406.1| N utilization substance protein B [Actinobacillus pleuropneumoniae serovar 4 str. M62] gi|307251733|ref|ZP_07533637.1| N utilization substance protein B [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|307253967|ref|ZP_07535819.1| N utilization substance protein B [Actinobacillus pleuropneumoniae serovar 9 str. CVJ13261] gi|307256228|ref|ZP_07538015.1| N utilization substance protein B [Actinobacillus pleuropneumoniae serovar 10 str. D13039] gi|307258422|ref|ZP_07540163.1| N utilization substance protein B [Actinobacillus pleuropneumoniae serovar 11 str. 56153] gi|307260660|ref|ZP_07542352.1| N utilization substance protein B [Actinobacillus pleuropneumoniae serovar 12 str. 1096] gi|307262792|ref|ZP_07544419.1| N utilization substance protein B [Actinobacillus pleuropneumoniae serovar 13 str. N273] gi|166215658|sp|A3MYS3|NUSB_ACTP2 RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|238687518|sp|B0BSK4|NUSB_ACTPJ RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|238692374|sp|B3H044|NUSB_ACTP7 RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|126096481|gb|ABN73309.1| transcription antitermination protein NusB [Actinobacillus pleuropneumoniae serovar 5b str. L20] gi|165875758|gb|ABY68806.1| transcription termination factor [Actinobacillus pleuropneumoniae serovar 3 str. JL03] gi|189914604|gb|ACE60856.1| transcription antitermination protein NusB [Actinobacillus pleuropneumoniae serovar 7 str. AP76] gi|306854179|gb|EFM86387.1| N utilization substance protein B [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|306856326|gb|EFM88478.1| N utilization substance protein B [Actinobacillus pleuropneumoniae serovar 2 str. S1536] gi|306858557|gb|EFM90622.1| N utilization substance protein B [Actinobacillus pleuropneumoniae serovar 4 str. M62] gi|306860819|gb|EFM92828.1| N utilization substance protein B [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|306863171|gb|EFM95113.1| N utilization substance protein B [Actinobacillus pleuropneumoniae serovar 9 str. CVJ13261] gi|306865409|gb|EFM97305.1| N utilization substance protein B [Actinobacillus pleuropneumoniae serovar 10 str. D13039] gi|306867606|gb|EFM99453.1| N utilization substance protein B [Actinobacillus pleuropneumoniae serovar 11 str. 56153] gi|306869737|gb|EFN01522.1| N utilization substance protein B [Actinobacillus pleuropneumoniae serovar 12 str. 1096] gi|306871937|gb|EFN03654.1| N utilization substance protein B [Actinobacillus pleuropneumoniae serovar 13 str. N273] Length = 137 Score = 52.0 bits (123), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 46/145 (31%), Positives = 71/145 (48%), Gaps = 14/145 (9%) Query: 10 LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF 69 +K+S RR AR AVQALY + S E+ F D +++ VDL +F Sbjct: 1 MKVSPRRR-ARECAVQALYSWYVSQNSVEEV-----ELSFVTDQDMN------GVDLPYF 48 Query: 70 RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISE 129 R ++ G + + ID + L + +D I +ILR EL VP +V+I+E Sbjct: 49 RKLLRGTVLYVEAIDNDLRPFLDR--AEDEVDPIERTILRLSAYELKYELDVPYKVVINE 106 Query: 130 YVCIAHDFFYGDEPKFINAVLDKVS 154 + +A F D K+IN +LDK++ Sbjct: 107 GIEVAKVFGSDDSHKYINGILDKLA 131 >gi|229493670|ref|ZP_04387455.1| transcription antitermination factor NusB [Rhodococcus erythropolis SK121] gi|229319631|gb|EEN85467.1| transcription antitermination factor NusB [Rhodococcus erythropolis SK121] Length = 165 Score = 52.0 bits (123), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 29/82 (35%), Positives = 42/82 (51%), Gaps = 1/82 (1%) Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131 ++ GV + ID +ISS L + W+ RL + +ILR V EL VP V + E V Sbjct: 59 LVSGVAENLDRIDQVISSHL-QDWTLERLPAVDRAILRIAVWELFHATDVPPVVAVDEAV 117 Query: 132 CIAHDFFYGDEPKFINAVLDKV 153 +A D P F+N +L +V Sbjct: 118 ELAKQLSTDDSPGFVNGILGQV 139 >gi|226306485|ref|YP_002766445.1| transcription antitermination protein NusB [Rhodococcus erythropolis PR4] gi|259514883|sp|C0ZZC1|NUSB_RHOE4 RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|226185602|dbj|BAH33706.1| transcription antitermination protein NusB [Rhodococcus erythropolis PR4] Length = 165 Score = 52.0 bits (123), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 29/82 (35%), Positives = 42/82 (51%), Gaps = 1/82 (1%) Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131 ++ GV + ID +ISS L + W+ RL + +ILR V EL VP V + E V Sbjct: 59 LVSGVAENLDRIDQVISSHL-QDWTLERLPAVDRAILRIAVWELFHATDVPPVVAVDEAV 117 Query: 132 CIAHDFFYGDEPKFINAVLDKV 153 +A D P F+N +L +V Sbjct: 118 ELAKQLSTDDSPGFVNGILGQV 139 >gi|29654709|ref|NP_820401.1| transcription antitermination protein NusB [Coxiella burnetii RSA 493] gi|161829811|ref|YP_001597256.1| transcription antitermination protein NusB [Coxiella burnetii RSA 331] gi|212212219|ref|YP_002303155.1| transcription antitermination protein NusB [Coxiella burnetii CbuG_Q212] gi|39931899|sp|Q83BT5|NUSB_COXBU RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|189035886|sp|A9KBN6|NUSB_COXBN RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|189035887|sp|A9N8T6|NUSB_COXBR RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|238055350|sp|B6IZ82|NUSB_COXB2 RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|29541977|gb|AAO90915.1| N utilization substance protein B [Coxiella burnetii RSA 493] gi|161761678|gb|ABX77320.1| transcription antitermination factor NusB [Coxiella burnetii RSA 331] gi|212010629|gb|ACJ18010.1| N utilization substance protein B [Coxiella burnetii CbuG_Q212] Length = 138 Score = 52.0 bits (123), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 40/139 (28%), Positives = 68/139 (48%), Gaps = 13/139 (9%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 R AR A+QALYQ +IS++ +DT D+ +F+ ++ G Sbjct: 6 RHNARRYALQALYQWFFCETKPDALISQFMEEHDLSDT-----------DVAYFKEVVTG 54 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135 + ID L+++ L K S L+ + S+LR + EL+ VP +V+I E + + Sbjct: 55 TIQHVAIIDELMTAHLDRK--ISALNPVELSVLRLSIYELLHRKEVPYKVVIDEALELVK 112 Query: 136 DFFYGDEPKFINAVLDKVS 154 +F K++NA+LD +S Sbjct: 113 EFGAEAGHKYVNAILDVLS 131 >gi|269836410|ref|YP_003318638.1| NusB antitermination factor [Sphaerobacter thermophilus DSM 20745] gi|269785673|gb|ACZ37816.1| NusB antitermination factor [Sphaerobacter thermophilus DSM 20745] Length = 140 Score = 52.0 bits (123), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 39/136 (28%), Positives = 68/136 (50%), Gaps = 12/136 (8%) Query: 19 ARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMD 78 AR A+Q LY+ D+ +++++ R+ +D L + V +V+ +I GVM+ Sbjct: 10 ARTLALQILYEADVAQHPASDVLA-----RYTSDLSLP-QPVRRYVER-----LISGVME 58 Query: 79 RKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFF 138 + ID I + + +L I +ILR + EL H VPV+ I+E V +A F Sbjct: 59 DLEKIDAEIGAA-APAFPVDQLPPIDRNILRIAIYELRNEHDVPVKAAINEAVELAKRFG 117 Query: 139 YGDEPKFINAVLDKVS 154 + +F+N VL ++ Sbjct: 118 GDNSSRFVNGVLGTIA 133 >gi|296394716|ref|YP_003659600.1| NusB antitermination factor [Segniliparus rotundus DSM 44985] gi|296181863|gb|ADG98769.1| NusB antitermination factor [Segniliparus rotundus DSM 44985] Length = 157 Score = 52.0 bits (123), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 42/145 (28%), Positives = 65/145 (44%), Gaps = 11/145 (7%) Query: 12 LSHRRGI---ARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEW 68 LS R G AR AV+ L++ + E+ +E A+ D+ + L + Sbjct: 8 LSKRAGSRRKARRRAVELLFEAEARDLDPAELAAER-----SAELVKDLSAPQLT---PY 59 Query: 69 FRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIIS 128 +++ GV D +D I L W+ RL + SILR V EL+ VP V + Sbjct: 60 ALLLLEGVRDNLDVVDQTIIDHLRGGWTLQRLPAVDRSILRIAVWELLFATEVPTAVAVD 119 Query: 129 EYVCIAHDFFYGDEPKFINAVLDKV 153 E + +A + D P FIN VL ++ Sbjct: 120 EALELAKELSTDDSPSFINGVLGQL 144 >gi|315031736|gb|EFT43668.1| transcription antitermination factor NusB [Enterococcus faecalis TX0017] Length = 156 Score = 52.0 bits (123), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 38/141 (26%), Positives = 65/141 (46%), Gaps = 11/141 (7%) Query: 20 RLAAVQALYQIDIIGCSTTEIISEY----ETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 R A+QAL+ +D T + +Y + ++ D+ YL + ++ G Sbjct: 18 REKALQALFPLDFNADLTKQDAIDYALAYDNREIVSEDSEDLVPTYLDL-------LVGG 70 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135 V RK +D +I++ L WS RL I ILR + E++ VP V ++E V ++ Sbjct: 71 VCSRKAELDEVITNHLGNNWSMQRLAKIDIVILRLAIFEMLYVSDVPNIVALNEAVELSK 130 Query: 136 DFFYGDEPKFINAVLDKVSRK 156 + KF+N VL V ++ Sbjct: 131 KYSDDRSRKFVNGVLSNVMKE 151 >gi|78065528|ref|YP_368297.1| transcription antitermination protein NusB [Burkholderia sp. 383] gi|119372282|sp|Q39IR3|NUSB_BURS3 RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|77966273|gb|ABB07653.1| NusB antitermination factor [Burkholderia sp. 383] Length = 145 Score = 52.0 bits (123), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 44/147 (29%), Positives = 66/147 (44%), Gaps = 14/147 (9%) Query: 10 LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF 69 +K S RR +R A Q LYQ + S+ EI D +L Y D E Sbjct: 1 MKKSARR-QSRELATQGLYQWLLSNASSGEI-----------DAQLRGALGYDKADKELL 48 Query: 70 RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISE 129 I+HGV+ ++H L+ + + +L + ++L EL P VII+E Sbjct: 49 EAILHGVI--REHATLVEALTPSLDRPIEQLSPVERAVLLIATFELTHHVETPYRVIINE 106 Query: 130 YVCIAHDFFYGDEPKFINAVLDKVSRK 156 V +A F D K++N VLDK++ K Sbjct: 107 AVELAKTFGGSDGYKYVNGVLDKLAAK 133 >gi|262376860|ref|ZP_06070087.1| transcription antitermination factor NusB [Acinetobacter lwoffii SH145] gi|262308205|gb|EEY89341.1| transcription antitermination factor NusB [Acinetobacter lwoffii SH145] Length = 149 Score = 52.0 bits (123), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 38/136 (27%), Positives = 63/136 (46%), Gaps = 13/136 (9%) Query: 19 ARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMD 78 AR AVQ +Y+ + EI + VE+ VDL ++ ++ V+ Sbjct: 15 ARRFAVQGIYEWQMSHNPVHEI-----------EARTRVENAMHKVDLSYYHELLTQVVA 63 Query: 79 RKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFF 138 + +D L+ L + S LD + + LR G EL E +P V++ E + +A F Sbjct: 64 NHEALDALLIPVLDRE--LSALDGVELATLRLGAYELKEHLEIPYRVVLDEAIELAKHFG 121 Query: 139 YGDEPKFINAVLDKVS 154 D K+IN VLD+++ Sbjct: 122 GADSHKYINGVLDRLA 137 >gi|256028476|ref|ZP_05442310.1| transcription antitermination protein NusB [Fusobacterium sp. D11] gi|289766397|ref|ZP_06525775.1| transcription antitermination protein NusB [Fusobacterium sp. D11] gi|289717952|gb|EFD81964.1| transcription antitermination protein NusB [Fusobacterium sp. D11] Length = 157 Score = 52.0 bits (123), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 39/150 (26%), Positives = 76/150 (50%), Gaps = 12/150 (8%) Query: 18 IARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVM 77 +AR + ++ ++ G S+ E+ ++ Y D E + LE+ + I+G++ Sbjct: 18 LAREEVFKLVFGAELTGSSSDELKQDFNIY-LQNDEEFI--NALSEKQLEFIKNSINGIV 74 Query: 78 DRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDF 137 + +I +I T+ W++ R+ +I S+L G E + + P+EVI +E V +A + Sbjct: 75 ENYDNIKDIIKKN-TQNWTYERIGVIERSLLIVGTYEFL-IKNTPIEVIANEIVELAKE- 131 Query: 138 FYGDEP--KFINAVLDKVSRKEEIKRSGCV 165 YG+E +FIN +L + E+ K G + Sbjct: 132 -YGNEKSYEFINGILANI---EKAKNKGTI 157 >gi|94995000|ref|YP_603098.1| transcription antitermination protein NusB [Streptococcus pyogenes MGAS10750] gi|94548508|gb|ABF38554.1| N utilization substance protein B [Streptococcus pyogenes MGAS10750] Length = 156 Score = 52.0 bits (123), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 42/154 (27%), Positives = 77/154 (50%), Gaps = 21/154 (13%) Query: 2 TIQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYE-TYRFCADTELDVESV 60 + Q++++DL R A QAL+ I++ E+++ + Y + T D + + Sbjct: 10 SFQNSRRDL---------RERAFQALFNIEM----GAELLAASQFAYGYDKVTGEDAQVL 56 Query: 61 YLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHS 120 L + + ++ GV + K+ +D LIS+ L + WS RL + ++LR G+ E+ Sbjct: 57 ELPI---FLLSLVMGVNNHKEELDNLISTHLKKGWSLERLTLTDKTLLRLGLFEIKYFDE 113 Query: 121 VPVEVIISEYVCIAHDFFYGDE--PKFINAVLDK 152 P V ++E + +A Y DE KFIN +L + Sbjct: 114 TPDRVALNEIIEVAKK--YSDETSAKFINGLLSQ 145 >gi|228477148|ref|ZP_04061786.1| transcription antitermination factor NusB [Streptococcus salivarius SK126] gi|312863702|ref|ZP_07723940.1| transcription antitermination factor NusB [Streptococcus vestibularis F0396] gi|322516050|ref|ZP_08068987.1| transcription antitermination factor NusB [Streptococcus vestibularis ATCC 49124] gi|228251167|gb|EEK10338.1| transcription antitermination factor NusB [Streptococcus salivarius SK126] gi|311101238|gb|EFQ59443.1| transcription antitermination factor NusB [Streptococcus vestibularis F0396] gi|322125465|gb|EFX96811.1| transcription antitermination factor NusB [Streptococcus vestibularis ATCC 49124] Length = 144 Score = 52.0 bits (123), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 45/153 (29%), Positives = 71/153 (46%), Gaps = 22/153 (14%) Query: 3 IQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYL 62 +D+++DL R A Q L+ ++ G + E + + D +D E+ Sbjct: 5 FKDSRRDL---------RERAFQTLFALEFGGEAL-----EQAHFAYTYDKPIDEET--- 47 Query: 63 HVDLEWFRV-IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSV 121 VD+ F + ++ GV + +D I L E WS SRL + ++LR G+ E+ Sbjct: 48 EVDVPAFLLSLVTGVREELAQLDSQIEEKLKEGWSLSRLIVTDRTLLRLGLYEITSFEET 107 Query: 122 PVEVIISEYVCIAHDFFYGDE--PKFINAVLDK 152 P V I+E + IA Y DE KFIN VL + Sbjct: 108 PGRVAINEIIEIAKK--YSDETSAKFINGVLSQ 138 >gi|239816087|ref|YP_002944997.1| NusB antitermination factor [Variovorax paradoxus S110] gi|259514920|sp|C5CPZ2|NUSB_VARPS RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|239802664|gb|ACS19731.1| NusB antitermination factor [Variovorax paradoxus S110] Length = 181 Score = 52.0 bits (123), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 40/139 (28%), Positives = 66/139 (47%), Gaps = 13/139 (9%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 R AR A+QALYQ + TEI F D + + D + ++HG Sbjct: 37 RSRAREFALQALYQHLVGRNDPTEID------HFTRDL-----AGFHKADAAHYDALLHG 85 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135 ++ + +D LI L K F + I +++ GV E C VP V+++E + +A Sbjct: 86 SIEGAEQLDALIRPLLDRK--FEEISPIEHAVMWIGVYEFQHCLDVPWRVVLNECIELAK 143 Query: 136 DFFYGDEPKFINAVLDKVS 154 +F D K++NAVL+ ++ Sbjct: 144 EFGGTDGHKYVNAVLNGLA 162 >gi|319939911|ref|ZP_08014266.1| transcription antitermination protein NusB [Streptococcus anginosus 1_2_62CV] gi|319810922|gb|EFW07241.1| transcription antitermination protein NusB [Streptococcus anginosus 1_2_62CV] Length = 141 Score = 52.0 bits (123), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 46/150 (30%), Positives = 73/150 (48%), Gaps = 21/150 (14%) Query: 9 DLKLSHRRGIARLAAVQAL----YQIDII-GCSTTEIISEYETYRFCADTELDVESVYLH 63 D++L RR + R A QAL Y+ DI+ C + + D ++ +S Sbjct: 3 DVQLEARREL-RERAFQALMSLEYEKDIVEACR----------FAYLYDKDMTNDS---D 48 Query: 64 VDLEWFRV-IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVP 122 V+L F + ++ GV K +D +S L E W+ RL +I +ILR G+ E+ E + P Sbjct: 49 VELPAFLLNLVMGVEQSKNELDDKLSQYLKEGWTLERLTLIEKNILRLGLFEMTEFDT-P 107 Query: 123 VEVIISEYVCIAHDFFYGDEPKFINAVLDK 152 V I+E + ++ F KFIN +L K Sbjct: 108 QLVAINEAIELSKKFSDEKSSKFINGILSK 137 >gi|329116212|ref|ZP_08244929.1| transcription antitermination factor NusB [Streptococcus parauberis NCFD 2020] gi|326906617|gb|EGE53531.1| transcription antitermination factor NusB [Streptococcus parauberis NCFD 2020] Length = 143 Score = 52.0 bits (123), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 47/159 (29%), Positives = 77/159 (48%), Gaps = 22/159 (13%) Query: 2 TIQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVY 61 + Q++++DL R A QAL+ +++ G E + E +F D + VE Sbjct: 4 SFQNSRRDL---------RERAFQALFNMELGG----EFL---EASQFAYDYDKIVEEGE 47 Query: 62 LHVDLEWFRV-IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHS 120 D+ F + +++GV D K +D LI+ L WS RL + ++LR G+ E+ Sbjct: 48 -KSDVPAFLLNLVNGVNDHKVELDQLITENLKTGWSIERLTLSDKTMLRLGLYEIKYFEE 106 Query: 121 VPVEVIISEYVCIAHDFFYGDE--PKFINAVLDKVSRKE 157 P V ++E + IA Y DE KFIN +L + + E Sbjct: 107 TPDRVALNEIIEIAKK--YSDETSAKFINGLLSQFVKAE 143 >gi|187779509|ref|ZP_02995982.1| hypothetical protein CLOSPO_03105 [Clostridium sporogenes ATCC 15579] gi|187773134|gb|EDU36936.1| hypothetical protein CLOSPO_03105 [Clostridium sporogenes ATCC 15579] Length = 143 Score = 52.0 bits (123), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 35/101 (34%), Positives = 51/101 (50%), Gaps = 2/101 (1%) Query: 54 ELDVESVYLH-VDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGV 112 E D ESV L VD+++ + II G+ + K+ ID I L W RL + SILR Sbjct: 43 EKDYESVDLKDVDIDYVKRIIKGIEENKEEIDEKIKGNLK-NWKIERLSKVDLSILRLCT 101 Query: 113 LELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKV 153 EL +P +V ++E + +A + FIN VL K+ Sbjct: 102 YELKFEEDIPSKVSVNEAIELAKKYSGEKAATFINGVLGKM 142 >gi|50914880|ref|YP_060852.1| transcription antitermination protein NusB [Streptococcus pyogenes MGAS10394] gi|50903954|gb|AAT87669.1| N utilization substance protein B [Streptococcus pyogenes MGAS10394] Length = 156 Score = 52.0 bits (123), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 42/154 (27%), Positives = 77/154 (50%), Gaps = 21/154 (13%) Query: 2 TIQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYE-TYRFCADTELDVESV 60 + Q++++DL R A QAL+ I+ + E+++ + Y + T D + + Sbjct: 10 SFQNSRRDL---------RERAFQALFNIE----TGAELLAASQFAYGYDKVTGEDAQVL 56 Query: 61 YLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHS 120 L + + ++ GV + K+ +D LIS+ L + WS RL + ++LR G+ E+ Sbjct: 57 ELPI---FLLSLVTGVNNHKEELDNLISTHLKKGWSLERLTLTDKTLLRLGLFEIKYFDE 113 Query: 121 VPVEVIISEYVCIAHDFFYGDE--PKFINAVLDK 152 P V ++E + +A Y DE KFIN +L + Sbjct: 114 TPDRVALNEIIEVAKK--YSDETSAKFINGLLSQ 145 >gi|325697632|gb|EGD39517.1| N utilization substance protein B [Streptococcus sanguinis SK160] Length = 143 Score = 52.0 bits (123), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 43/146 (29%), Positives = 71/146 (48%), Gaps = 11/146 (7%) Query: 9 DLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYL-HVDLE 67 D+ L RRG+ R A QAL ++ G E RF + D E+ + D+ Sbjct: 3 DILLESRRGL-RQRAFQALMSLEYEGDLV-------EACRFAYSYDKDEEADKVAEADIP 54 Query: 68 WFRV-IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVI 126 F + ++ GV+ K +D I+ L + W+ RL ++ +ILR G+ E+ E + P V Sbjct: 55 AFLLNLVSGVVQSKDDLDKKIAQHLKKGWTVDRLTLVEKNILRLGIFEITEFDT-PQLVA 113 Query: 127 ISEYVCIAHDFFYGDEPKFINAVLDK 152 ++E + ++ F KFIN +L K Sbjct: 114 VNEAIELSKQFSDEKSSKFINGILSK 139 >gi|260583696|ref|ZP_05851444.1| transcription antitermination factor NusB [Granulicatella elegans ATCC 700633] gi|260158322|gb|EEW93390.1| transcription antitermination factor NusB [Granulicatella elegans ATCC 700633] Length = 154 Score = 52.0 bits (123), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 50/150 (33%), Positives = 75/150 (50%), Gaps = 22/150 (14%) Query: 15 RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVES----VYLH------- 63 +R R+ A+QALYQ+DI C +SE++ R D D +S VY + Sbjct: 7 KRRALRIIAIQALYQMDI--CKD---LSEFDAVRLALDVLHDEQSFDEEVYSNEALLDEF 61 Query: 64 VDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECH-SVP 122 ++ + +I GV ++ + ID LISS L + W +R+ + I+R V E+ VP Sbjct: 62 PEIHYSLDLIQGVQNQLEEIDALISSHL-KGWELNRIVRLDLMIMRVAVCEMRSPELEVP 120 Query: 123 VEVIISEYVCIAHDFFYGDE--PKFINAVL 150 V ++E + IA Y DE KFIN VL Sbjct: 121 QTVALNEAIEIAK--LYSDEKSAKFINGVL 148 >gi|228992930|ref|ZP_04152854.1| N utilization substance protein B [Bacillus pseudomycoides DSM 12442] gi|228998974|ref|ZP_04158556.1| N utilization substance protein B [Bacillus mycoides Rock3-17] gi|229006513|ref|ZP_04164157.1| N utilization substance protein B [Bacillus mycoides Rock1-4] gi|228754739|gb|EEM04140.1| N utilization substance protein B [Bacillus mycoides Rock1-4] gi|228760591|gb|EEM09555.1| N utilization substance protein B [Bacillus mycoides Rock3-17] gi|228766787|gb|EEM15426.1| N utilization substance protein B [Bacillus pseudomycoides DSM 12442] Length = 120 Score = 52.0 bits (123), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 40/130 (30%), Positives = 61/130 (46%), Gaps = 14/130 (10%) Query: 24 VQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHI 83 +QALYQ+DI G E E +T + E E+ ++ G ++ K+ I Sbjct: 1 MQALYQMDITG--------ELEPKVAVENTLEEGEETN-----EFLESLVVGCVEHKEAI 47 Query: 84 DLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEP 143 D I L +KW R+ ++ SILR V E+ +P V I+E + IA F + Sbjct: 48 DEAIRQNL-KKWKLERISIVDRSILRLAVYEMKYMEEIPHNVTINEAIEIAKTFGDEESR 106 Query: 144 KFINAVLDKV 153 +FIN VL + Sbjct: 107 RFINGVLSNI 116 >gi|32265536|ref|NP_859568.1| transcription antitermination protein NusB [Helicobacter hepaticus ATCC 51449] gi|39931804|sp|Q7VK55|NUSB_HELHP RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|32261584|gb|AAP76634.1| transcription termination factor NusB [Helicobacter hepaticus ATCC 51449] Length = 157 Score = 52.0 bits (123), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 33/87 (37%), Positives = 49/87 (56%), Gaps = 7/87 (8%) Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131 ++ GV++ IDL I+ L E W FSRL + ++LR G E++ + VII+E V Sbjct: 49 LLQGVIEHLSQIDLCIAPYLKE-WEFSRLGGMERAMLRLGAFEILYTET-DTPVIINEAV 106 Query: 132 CIAHDFFYGDE---PKFINAVLDKVSR 155 + YG E P+FIN VLD +S+ Sbjct: 107 ELGK--MYGGEDNAPRFINGVLDALSK 131 >gi|306820223|ref|ZP_07453865.1| transcription antitermination factor NusB [Eubacterium yurii subsp. margaretiae ATCC 43715] gi|304551720|gb|EFM39669.1| transcription antitermination factor NusB [Eubacterium yurii subsp. margaretiae ATCC 43715] Length = 212 Score = 52.0 bits (123), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 47/202 (23%), Positives = 81/202 (40%), Gaps = 53/202 (26%) Query: 1 MTIQDNKKDLKLSHRRGIARLAAVQALYQIDII-------------------------GC 35 M + +NKK+ +S R R +Q LYQ+DI C Sbjct: 1 MNVDENKKNPNMSLSRKRQRQNVMQMLYQMDIQDNFTKSATINIDKKLKDEKYEISLDNC 60 Query: 36 STTE-------IISEYETYRFCADTEL------------DVESVYLH--------VDLEW 68 + E +I+++ + + EL +V Y + D+ + Sbjct: 61 NNIENIEHVKKLIADFSGEKIPENFELGDFIEQDDLITYEVTDTYSYSQENLKNFTDIGY 120 Query: 69 FRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIIS 128 ++ I +D K ID IS L+EKW+ RL I +++R + E I+ +P +V I+ Sbjct: 121 IKLFISSFLDNKDLIDSEISQVLSEKWTVKRLSKIDLALIRTAITE-IKYLDIPYKVAIN 179 Query: 129 EYVCIAHDFFYGDEPKFINAVL 150 E + +A + FIN +L Sbjct: 180 EALELAKKYSDEKSSSFINGIL 201 >gi|315222311|ref|ZP_07864217.1| transcription antitermination factor NusB [Streptococcus anginosus F0211] gi|315188644|gb|EFU22353.1| transcription antitermination factor NusB [Streptococcus anginosus F0211] Length = 141 Score = 52.0 bits (123), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 42/148 (28%), Positives = 72/148 (48%), Gaps = 17/148 (11%) Query: 9 DLKLSHRRGIARLAAVQAL----YQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHV 64 D++L RR + R A QAL Y+ DI+ + + + D+++++ + L+ Sbjct: 3 DVQLEARREL-RERAFQALMSLEYEKDIVEACRFAYLYDKD---MTNDSDVEIPAFLLN- 57 Query: 65 DLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVE 124 ++ GV K +D +S L E W+ RL +I +ILR G+ E+ E + P Sbjct: 58 -------LVTGVEQSKNELDDKLSQYLKEGWTLERLTLIEKNILRLGLFEMTEFDT-PQL 109 Query: 125 VIISEYVCIAHDFFYGDEPKFINAVLDK 152 V I+E + ++ F KFIN +L K Sbjct: 110 VAINEAIELSKKFSDEKSSKFINGILSK 137 >gi|323353378|ref|ZP_08087911.1| N utilization substance protein B [Streptococcus sanguinis VMC66] gi|322121324|gb|EFX93087.1| N utilization substance protein B [Streptococcus sanguinis VMC66] gi|327472778|gb|EGF18205.1| N utilization substance protein B [Streptococcus sanguinis SK408] Length = 143 Score = 52.0 bits (123), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 43/146 (29%), Positives = 73/146 (50%), Gaps = 11/146 (7%) Query: 9 DLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVES-VYLHVDLE 67 D+ L RRG+ R A QAL ++ G E++ E RF + D E+ D+ Sbjct: 3 DILLESRRGL-RQRAFQALMSLEYEG----ELV---EACRFAYSYDKDEEADKAAEADIP 54 Query: 68 WFRV-IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVI 126 F + ++ GV+ K +D I+ L + W+ RL ++ +ILR G+ E+ E + P V Sbjct: 55 AFLLNLVSGVVQSKDDLDKKIAQHLKKGWTVDRLTLVEKNILRLGIFEITEFDT-PQLVA 113 Query: 127 ISEYVCIAHDFFYGDEPKFINAVLDK 152 ++E + ++ F KFIN +L + Sbjct: 114 VNEAIELSKQFSDEKSSKFINGILSQ 139 >gi|57239039|ref|YP_180175.1| putative N utilization substance protein B-like protein [Ehrlichia ruminantium str. Welgevonden] gi|58578981|ref|YP_197193.1| putative N utilization substance protein B-like protein [Ehrlichia ruminantium str. Welgevonden] gi|58617039|ref|YP_196238.1| putative N utilization substance protein B-like protein [Ehrlichia ruminantium str. Gardel] gi|57161118|emb|CAH58029.1| hypothetical protein Erum3120 [Ehrlichia ruminantium str. Welgevonden] gi|58416651|emb|CAI27764.1| Putative N utilization substance protein B homolog [Ehrlichia ruminantium str. Gardel] gi|58417607|emb|CAI26811.1| Putative N utilization substance protein B homolog [Ehrlichia ruminantium str. Welgevonden] Length = 174 Score = 52.0 bits (123), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 30/91 (32%), Positives = 51/91 (56%), Gaps = 1/91 (1%) Query: 62 LHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSV 121 +++D + II ++ +I+ I+ L EKWS R+++I SI++ + EL+ C Sbjct: 56 MYIDDQLLLKIISTMLIAFNNINSNIAGFLNEKWSIDRINLISLSIIKTAICELM-CSKT 114 Query: 122 PVEVIISEYVCIAHDFFYGDEPKFINAVLDK 152 +II+EYV IA E FINA+L++ Sbjct: 115 DKIIIINEYVNIASQILERTEVNFINAILNQ 145 >gi|21674526|ref|NP_662591.1| N utilization substance protein B [Chlorobium tepidum TLS] gi|28201843|sp|Q8KBS4|NUSB_CHLTE RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|21647719|gb|AAM72933.1| N utilization substance protein B [Chlorobium tepidum TLS] Length = 164 Score = 52.0 bits (123), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 37/142 (26%), Positives = 69/142 (48%), Gaps = 13/142 (9%) Query: 13 SHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVI 72 ++RR + R +QALY +++ T + T D +++F + Sbjct: 3 TYRRQL-REKIIQALYTLELRDVDTDSAANWLLTKEIMDDPNA----------MKFFNHL 51 Query: 73 IHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVC 132 + ++ ++ ID I+ T W SR+ +I +ILR + E++ C +P +V I+E + Sbjct: 52 MQSIVRNREEIDRYIAKH-TFNWDMSRIAIIDKNILRMALAEILYCEDIPPKVSINEAIE 110 Query: 133 IAHDFFYGDE-PKFINAVLDKV 153 IA F D+ KF+N +LD + Sbjct: 111 IAKKFSSTDKSSKFVNGILDAI 132 >gi|332363255|gb|EGJ41040.1| N utilization substance protein B [Streptococcus sanguinis SK49] Length = 143 Score = 52.0 bits (123), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 41/143 (28%), Positives = 71/143 (49%), Gaps = 9/143 (6%) Query: 9 DLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEW 68 D+ L RRG+ R A QAL ++ G + E + + D + D + V D+ Sbjct: 3 DILLESRRGL-RQRAFQALMSLEYEGD-----LVEACRFAYSYDKDEDADKVA-EADIPA 55 Query: 69 FRV-IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVII 127 F + ++ GV+ K +D I+ L + W+ RL ++ +ILR G+ E+ E + P V + Sbjct: 56 FLLNLVSGVVQSKDDLDKKIAQHLKKGWTVDRLTLVEKNILRLGIFEITEFDT-PQLVAV 114 Query: 128 SEYVCIAHDFFYGDEPKFINAVL 150 +E + ++ F KFIN +L Sbjct: 115 NEAIELSKQFSDEKSSKFINGIL 137 >gi|219872292|ref|YP_002476667.1| transcription antitermination protein NusB [Haemophilus parasuis SH0165] gi|254772642|sp|B8F8R7|NUSB_HAEPS RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|219692496|gb|ACL33719.1| transcription antitermination protein N utilization substance B (NusB) [Haemophilus parasuis SH0165] Length = 137 Score = 52.0 bits (123), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 46/145 (31%), Positives = 71/145 (48%), Gaps = 14/145 (9%) Query: 10 LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF 69 +K+S RR AR AVQALY I S ++ F D ++ VD+ +F Sbjct: 1 MKVSPRRR-ARECAVQALYSWYISQNSIEQV-----ELAFVTDQDMQ------GVDMPYF 48 Query: 70 RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISE 129 R ++ G ++ ID ++ L + + LD I +ILR EL VP +V I+E Sbjct: 49 RKLLRGTVENVDVIDDILRPYLDR--ADNELDPIERTILRLAGYELKFELDVPYKVAINE 106 Query: 130 YVCIAHDFFYGDEPKFINAVLDKVS 154 + +A F D K++N VLDK++ Sbjct: 107 AIEVAKVFGSDDSHKYVNGVLDKLA 131 >gi|296161946|ref|ZP_06844746.1| NusB antitermination factor [Burkholderia sp. Ch1-1] gi|295887822|gb|EFG67640.1| NusB antitermination factor [Burkholderia sp. Ch1-1] Length = 144 Score = 51.6 bits (122), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 41/145 (28%), Positives = 63/145 (43%), Gaps = 15/145 (10%) Query: 10 LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF 69 +K + RR +R A Q LYQ + G EI D +L + D E Sbjct: 1 MKSARRR--SRELATQGLYQWLLSGSPGGEI-----------DAQLRGAQGFDKADHEHL 47 Query: 70 RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISE 129 ++HGV+ + + I CL +L + ++L EL +P V+I+E Sbjct: 48 NALLHGVIRDSEALSADIVPCLDR--PIEQLSPVERAVLLVAAFELKNHVDIPYRVVINE 105 Query: 130 YVCIAHDFFYGDEPKFINAVLDKVS 154 V +A F D K++N VLDK+S Sbjct: 106 AVELAKTFGGADGYKYVNGVLDKLS 130 >gi|258592181|emb|CBE68490.1| N utilization substance protein B homolog (Protein nusB) [NC10 bacterium 'Dutch sediment'] Length = 143 Score = 51.6 bits (122), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 40/140 (28%), Positives = 66/140 (47%), Gaps = 11/140 (7%) Query: 15 RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74 +R AR A+ LYQ++ E+ ++ F AD E L +L + Sbjct: 3 KRHRARELALSLLYQLEFYPLEAFEV----QSAAFWADHPAGPEIRSLTDEL------VQ 52 Query: 75 GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134 G + ++ ID +++S + E W SRL ++ +LR EL+ P +V I E + +A Sbjct: 53 GTLQHQKPIDEVLASHV-EHWILSRLALVDLCVLRLAAFELLFYGKTPWKVAIDEAIELA 111 Query: 135 HDFFYGDEPKFINAVLDKVS 154 F D F+N VLDK++ Sbjct: 112 KAFGGKDSGAFVNGVLDKLA 131 >gi|154502455|ref|ZP_02039515.1| hypothetical protein RUMGNA_00268 [Ruminococcus gnavus ATCC 29149] gi|153796851|gb|EDN79271.1| hypothetical protein RUMGNA_00268 [Ruminococcus gnavus ATCC 29149] Length = 132 Score = 51.6 bits (122), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 29/90 (32%), Positives = 51/90 (56%), Gaps = 1/90 (1%) Query: 65 DLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVE 124 D E+ + + V+++ + ID +++ T W SR++ + +ILR V E+ VPV+ Sbjct: 43 DKEYIQKKLEAVVEKLEEIDAILNEKAT-GWKTSRMNKVDLAILRLAVYEIKWDDDVPVK 101 Query: 125 VIISEYVCIAHDFFYGDEPKFINAVLDKVS 154 V I+E V +A F + P F+N VL K++ Sbjct: 102 VAINEAVELAKKFSGEEGPAFVNGVLAKIA 131 >gi|134298933|ref|YP_001112429.1| NusB antitermination factor [Desulfotomaculum reducens MI-1] gi|172044268|sp|A4J3F1|NUSB_DESRM RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|134051633|gb|ABO49604.1| NusB antitermination factor [Desulfotomaculum reducens MI-1] Length = 143 Score = 51.6 bits (122), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 32/135 (23%), Positives = 67/135 (49%), Gaps = 12/135 (8%) Query: 19 ARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMD 78 AR A+Q L+QID+ G + ++ F A + ++E+ R ++ G ++ Sbjct: 6 ARETALQVLFQIDL-GKTEPDLALNNTAEEFGAGPQ----------EIEFARQLVMGTLE 54 Query: 79 RKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFF 138 + ID +I +++W +R+ + +I+R + E+ +P V ++E + ++ F Sbjct: 55 HIEEIDAMIGKV-SKEWQLNRMANVDRNIMRLAIFEMNYRADIPKSVSVNEALELSKIFG 113 Query: 139 YGDEPKFINAVLDKV 153 D +FIN +L K+ Sbjct: 114 TPDSVRFINGILGKL 128 >gi|229075890|ref|ZP_04208866.1| N utilization substance protein B [Bacillus cereus Rock4-18] gi|228707205|gb|EEL59402.1| N utilization substance protein B [Bacillus cereus Rock4-18] Length = 114 Score = 51.6 bits (122), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 32/89 (35%), Positives = 47/89 (52%), Gaps = 5/89 (5%) Query: 67 EWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVI 126 E+ ++ G +D K+ ID I L +KW R+ ++ SILR V E+ +P V Sbjct: 25 EFLESLVVGFVDNKEEIDAAIRQNL-KKWKLERISIVDRSILRVAVYEMKYMEEIPHNVT 83 Query: 127 ISEYVCIAHDFFYGDEP--KFINAVLDKV 153 I+E + IA F GDE +FIN VL + Sbjct: 84 INEAIEIAKTF--GDEESRRFINGVLSNI 110 >gi|270263549|ref|ZP_06191818.1| putative N-utilization protein B [Serratia odorifera 4Rx13] gi|270042433|gb|EFA15528.1| putative N-utilization protein B [Serratia odorifera 4Rx13] Length = 140 Score = 51.6 bits (122), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 40/132 (30%), Positives = 65/132 (49%), Gaps = 13/132 (9%) Query: 23 AVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQH 82 AVQALY + ++ ++F TE DV+ V D+ +FR ++ GV Sbjct: 13 AVQALYSWQLSKNDIADV-----EHQFL--TEQDVKDV----DIAYFRELLSGVAVNAGL 61 Query: 83 IDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDE 142 +D L++ L+ + L + ++LR + EL VP +V I+E + +A F D Sbjct: 62 LDGLMAPFLSRQ--LEELGQVERAVLRIALFELKMREDVPYKVAINEAIELAKTFGAEDS 119 Query: 143 PKFINAVLDKVS 154 KF+N VLDK + Sbjct: 120 HKFVNGVLDKAA 131 >gi|312139563|ref|YP_004006899.1| transcriptional antiterminator factor nusb [Rhodococcus equi 103S] gi|325672553|ref|ZP_08152249.1| transcription antitermination protein NusB [Rhodococcus equi ATCC 33707] gi|311888902|emb|CBH48215.1| transcriptional antiterminator factor NusB [Rhodococcus equi 103S] gi|325556430|gb|EGD26096.1| transcription antitermination protein NusB [Rhodococcus equi ATCC 33707] Length = 167 Score = 51.6 bits (122), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 28/82 (34%), Positives = 42/82 (51%), Gaps = 1/82 (1%) Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131 ++ GV + +D +I S L + W+ RL + +ILR V EL VP V + E V Sbjct: 59 VVQGVAENLDRLDQVIESHL-QDWTLDRLPAVDRAILRIAVWELFHATDVPPVVAVDEAV 117 Query: 132 CIAHDFFYGDEPKFINAVLDKV 153 +A + D P F+N VL +V Sbjct: 118 ELAKELSTDDSPGFVNGVLGQV 139 >gi|294648615|ref|ZP_06726078.1| transcription antitermination protein NusB [Acinetobacter haemolyticus ATCC 19194] gi|292825491|gb|EFF84231.1| transcription antitermination protein NusB [Acinetobacter haemolyticus ATCC 19194] Length = 149 Score = 51.6 bits (122), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 38/134 (28%), Positives = 63/134 (47%), Gaps = 13/134 (9%) Query: 23 AVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQH 82 AVQ +Y+ + EI + VE+ VDL ++ ++ V+ + + Sbjct: 19 AVQGIYEWQMSQNPVHEI-----------EARTRVENAMHKVDLNYYHELLTQVVAQHEA 67 Query: 83 IDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDE 142 +D L+ L + S LD + + LR G EL + VP V++ E + +A F D Sbjct: 68 LDELLVPVLDRE--LSALDGVELATLRLGAYELRDHLEVPYRVVLDEAIELAKHFGGADS 125 Query: 143 PKFINAVLDKVSRK 156 K+IN VLD++S K Sbjct: 126 HKYINGVLDRLSSK 139 >gi|227517900|ref|ZP_03947949.1| transcription antitermination protein NusB [Enterococcus faecalis TX0104] gi|227555087|ref|ZP_03985134.1| transcription antitermination protein NusB [Enterococcus faecalis HH22] gi|229546824|ref|ZP_04435549.1| transcription antitermination protein NusB [Enterococcus faecalis TX1322] gi|229548918|ref|ZP_04437643.1| transcription antitermination protein NusB [Enterococcus faecalis ATCC 29200] gi|293382527|ref|ZP_06628461.1| transcription antitermination factor NusB [Enterococcus faecalis R712] gi|293387873|ref|ZP_06632412.1| transcription antitermination factor NusB [Enterococcus faecalis S613] gi|307268058|ref|ZP_07549446.1| transcription antitermination factor NusB [Enterococcus faecalis TX4248] gi|307271988|ref|ZP_07553255.1| transcription antitermination factor NusB [Enterococcus faecalis TX0855] gi|307275459|ref|ZP_07556601.1| transcription antitermination factor NusB [Enterococcus faecalis TX2134] gi|307278973|ref|ZP_07560032.1| transcription antitermination factor NusB [Enterococcus faecalis TX0860] gi|307289420|ref|ZP_07569374.1| transcription antitermination factor NusB [Enterococcus faecalis TX0109] gi|307290060|ref|ZP_07569984.1| transcription antitermination factor NusB [Enterococcus faecalis TX0411] gi|312900448|ref|ZP_07759755.1| transcription antitermination factor NusB [Enterococcus faecalis TX0470] gi|312904540|ref|ZP_07763698.1| transcription antitermination factor NusB [Enterococcus faecalis TX0635] gi|312906870|ref|ZP_07765867.1| transcription antitermination factor NusB [Enterococcus faecalis DAPTO 512] gi|312952750|ref|ZP_07771612.1| transcription antitermination factor NusB [Enterococcus faecalis TX0102] gi|312978875|ref|ZP_07790601.1| transcription antitermination factor NusB [Enterococcus faecalis DAPTO 516] gi|227074654|gb|EEI12617.1| transcription antitermination protein NusB [Enterococcus faecalis TX0104] gi|227175755|gb|EEI56727.1| transcription antitermination protein NusB [Enterococcus faecalis HH22] gi|229305939|gb|EEN71935.1| transcription antitermination protein NusB [Enterococcus faecalis ATCC 29200] gi|229307989|gb|EEN73976.1| transcription antitermination protein NusB [Enterococcus faecalis TX1322] gi|291080075|gb|EFE17439.1| transcription antitermination factor NusB [Enterococcus faecalis R712] gi|291082720|gb|EFE19683.1| transcription antitermination factor NusB [Enterococcus faecalis S613] gi|306498902|gb|EFM68396.1| transcription antitermination factor NusB [Enterococcus faecalis TX0411] gi|306499675|gb|EFM69038.1| transcription antitermination factor NusB [Enterococcus faecalis TX0109] gi|306504360|gb|EFM73571.1| transcription antitermination factor NusB [Enterococcus faecalis TX0860] gi|306507847|gb|EFM76975.1| transcription antitermination factor NusB [Enterococcus faecalis TX2134] gi|306511335|gb|EFM80338.1| transcription antitermination factor NusB [Enterococcus faecalis TX0855] gi|306515699|gb|EFM84226.1| transcription antitermination factor NusB [Enterococcus faecalis TX4248] gi|310627124|gb|EFQ10407.1| transcription antitermination factor NusB [Enterococcus faecalis DAPTO 512] gi|310629266|gb|EFQ12549.1| transcription antitermination factor NusB [Enterococcus faecalis TX0102] gi|310632053|gb|EFQ15336.1| transcription antitermination factor NusB [Enterococcus faecalis TX0635] gi|311288312|gb|EFQ66868.1| transcription antitermination factor NusB [Enterococcus faecalis DAPTO 516] gi|311292424|gb|EFQ70980.1| transcription antitermination factor NusB [Enterococcus faecalis TX0470] gi|315026954|gb|EFT38886.1| transcription antitermination factor NusB [Enterococcus faecalis TX2137] gi|315029667|gb|EFT41599.1| transcription antitermination factor NusB [Enterococcus faecalis TX4000] gi|315034207|gb|EFT46139.1| transcription antitermination factor NusB [Enterococcus faecalis TX0027] gi|315144361|gb|EFT88377.1| transcription antitermination factor NusB [Enterococcus faecalis TX2141] gi|315147929|gb|EFT91945.1| transcription antitermination factor NusB [Enterococcus faecalis TX4244] gi|315149499|gb|EFT93515.1| transcription antitermination factor NusB [Enterococcus faecalis TX0012] gi|315153054|gb|EFT97070.1| transcription antitermination factor NusB [Enterococcus faecalis TX0031] gi|315156826|gb|EFU00843.1| transcription antitermination factor NusB [Enterococcus faecalis TX0043] gi|315157613|gb|EFU01630.1| transcription antitermination factor NusB [Enterococcus faecalis TX0312] gi|315162959|gb|EFU06976.1| transcription antitermination factor NusB [Enterococcus faecalis TX0645] gi|315165157|gb|EFU09174.1| transcription antitermination factor NusB [Enterococcus faecalis TX1302] gi|315168057|gb|EFU12074.1| transcription antitermination factor NusB [Enterococcus faecalis TX1341] gi|315171915|gb|EFU15932.1| transcription antitermination factor NusB [Enterococcus faecalis TX1342] gi|315173308|gb|EFU17325.1| transcription antitermination factor NusB [Enterococcus faecalis TX1346] gi|315574278|gb|EFU86469.1| transcription antitermination factor NusB [Enterococcus faecalis TX0309B] gi|315577406|gb|EFU89597.1| transcription antitermination factor NusB [Enterococcus faecalis TX0630] gi|315581567|gb|EFU93758.1| transcription antitermination factor NusB [Enterococcus faecalis TX0309A] gi|327534564|gb|AEA93398.1| transcription antitermination factor NusB [Enterococcus faecalis OG1RF] Length = 156 Score = 51.6 bits (122), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 38/141 (26%), Positives = 65/141 (46%), Gaps = 11/141 (7%) Query: 20 RLAAVQALYQIDIIGCSTTEIISEY----ETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 R A+QAL+ +D T + +Y + ++ D+ YL + ++ G Sbjct: 18 REKALQALFPLDFNADLTKQDAIDYALAYDNREIVSEDGEDLVPTYLDL-------LVGG 70 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135 V RK +D +I++ L WS RL I ILR + E++ VP V ++E V ++ Sbjct: 71 VCSRKAELDEVITNHLGNNWSMQRLAKIDIVILRLAIFEMLYVSDVPNIVALNEAVELSK 130 Query: 136 DFFYGDEPKFINAVLDKVSRK 156 + KF+N VL V ++ Sbjct: 131 KYSDDRSRKFVNGVLSNVMKE 151 >gi|220904887|ref|YP_002480199.1| NusB antitermination factor [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] gi|254772632|sp|B8J194|NUSB_DESDA RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|219869186|gb|ACL49521.1| NusB antitermination factor [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] Length = 164 Score = 51.6 bits (122), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 39/148 (26%), Positives = 65/148 (43%), Gaps = 9/148 (6%) Query: 11 KLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVD---LE 67 K + RRG R A Q LY + + E + ++R D E + V+ Sbjct: 5 KNATRRG-ERELAFQVLYGLSFTPARSLEEL--RRSFRMSPDNLARSEESGVPVEACGFS 61 Query: 68 WFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVII 127 W ++ GV +D IS + W R+ + ++LR EL+ VP +V I Sbjct: 62 W--ELVEGVWSNSSALDETISR-FSHNWRVDRMGRVELTLLRLAAYELVFRADVPPKVAI 118 Query: 128 SEYVCIAHDFFYGDEPKFINAVLDKVSR 155 +E + ++ F G+ FIN +LD V++ Sbjct: 119 NEALELSRQFGEGNAKNFINGILDAVAK 146 >gi|29375559|ref|NP_814713.1| transcription antitermination protein NusB [Enterococcus faecalis V583] gi|256852630|ref|ZP_05558001.1| transcription antitermination protein NusB [Enterococcus faecalis T8] gi|39931895|sp|Q836W8|NUSB_ENTFA RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|29343020|gb|AAO80783.1| N utilization substance protein B [Enterococcus faecalis V583] gi|256711975|gb|EEU27012.1| transcription antitermination protein NusB [Enterococcus faecalis T8] Length = 154 Score = 51.6 bits (122), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 38/141 (26%), Positives = 65/141 (46%), Gaps = 11/141 (7%) Query: 20 RLAAVQALYQIDIIGCSTTEIISEY----ETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 R A+QAL+ +D T + +Y + ++ D+ YL + ++ G Sbjct: 16 REKALQALFPLDFNADLTKQDAIDYALAYDNREIVSEDGEDLVPTYLDL-------LVGG 68 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135 V RK +D +I++ L WS RL I ILR + E++ VP V ++E V ++ Sbjct: 69 VCSRKAELDEVITNHLGNNWSMQRLAKIDIVILRLAIFEMLYVSDVPNIVALNEAVELSK 128 Query: 136 DFFYGDEPKFINAVLDKVSRK 156 + KF+N VL V ++ Sbjct: 129 KYSDDRSRKFVNGVLSNVMKE 149 >gi|229916254|ref|YP_002884900.1| NusB antitermination factor [Exiguobacterium sp. AT1b] gi|259514838|sp|C4L3F7|NUSB_EXISA RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|229467683|gb|ACQ69455.1| NusB antitermination factor [Exiguobacterium sp. AT1b] Length = 128 Score = 51.6 bits (122), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 42/145 (28%), Positives = 68/145 (46%), Gaps = 20/145 (13%) Query: 15 RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74 +R AR A+Q L+QI++ E I F D E ES ++ ++ Sbjct: 2 KRHEAREKAIQTLFQIEVSKLEVDEAIE------FALDGE---ESDP------FYEQLVT 46 Query: 75 GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134 G ++ + ID L+ L + W RL + +ILR EL+ ++P V I+E V +A Sbjct: 47 GTLEHIEDIDALLVENL-KNWRLDRLGNVERTILRMATFELLYVETIPENVTINEAVELA 105 Query: 135 HDFFYGDEP--KFINAVLDKVSRKE 157 F GDE K +N VL + +++ Sbjct: 106 KSF--GDEEAGKLVNGVLGNIIKED 128 >gi|266618676|pdb|3IMQ|A Chain A, Crystal Structure Of The Nusb101-S10(Delta Loop) Complex gi|266618678|pdb|3IMQ|B Chain B, Crystal Structure Of The Nusb101-S10(Delta Loop) Complex gi|266618680|pdb|3IMQ|C Chain C, Crystal Structure Of The Nusb101-S10(Delta Loop) Complex Length = 141 Score = 51.6 bits (122), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 40/132 (30%), Positives = 65/132 (49%), Gaps = 13/132 (9%) Query: 23 AVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQH 82 AVQALY + ++ Y+F A E DV+ V D+ +FR ++ GV + Sbjct: 15 AVQALYSWQLSQNDIADV-----EYQFLA--EQDVKDV----DVLYFRELLAGVATNTAY 63 Query: 83 IDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDE 142 +D L+ L+ L + ++LR + EL + VP +V I+E + +A F + Sbjct: 64 LDGLMKPYLSR--LLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAENS 121 Query: 143 PKFINAVLDKVS 154 KF+N VLDK + Sbjct: 122 HKFVNGVLDKAA 133 >gi|193212152|ref|YP_001998105.1| NusB antitermination factor [Chlorobaculum parvum NCIB 8327] gi|238692614|sp|B3QLL5|NUSB_CHLP8 RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|193085629|gb|ACF10905.1| NusB antitermination factor [Chlorobaculum parvum NCIB 8327] Length = 164 Score = 51.6 bits (122), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 36/142 (25%), Positives = 70/142 (49%), Gaps = 13/142 (9%) Query: 13 SHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVI 72 ++RR + R +QALY +++ T + T D +++F + Sbjct: 3 TYRRQL-REKIIQALYTLELRDVDTDSATNWLLTKEMADDPNA----------MKFFNHL 51 Query: 73 IHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVC 132 + ++D ++ ID I+ T W +R+ +I +ILR + E++ C +P +V I+E + Sbjct: 52 MKSIIDHREEIDRHIAKH-TFNWDMNRIAIIDKNILRMALAEILYCEDIPPKVSINEAIE 110 Query: 133 IAHDFFYGDE-PKFINAVLDKV 153 IA F ++ KF+N +LD + Sbjct: 111 IAKKFNSTEKSSKFVNGILDAI 132 >gi|152966952|ref|YP_001362736.1| NusB antitermination factor [Kineococcus radiotolerans SRS30216] gi|189035892|sp|A6WCD3|NUSB_KINRD RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|151361469|gb|ABS04472.1| NusB antitermination factor [Kineococcus radiotolerans SRS30216] Length = 136 Score = 51.6 bits (122), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 26/92 (28%), Positives = 51/92 (55%), Gaps = 1/92 (1%) Query: 67 EWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVI 126 E+ ++ GV++ + ID ++S+ + W R+ + ++LR G E++ VP V Sbjct: 42 EYAVTVVEGVVEHQARIDEVLSTY-SMAWPLDRMPAVDRALLRIGTWEVLYAADVPDHVA 100 Query: 127 ISEYVCIAHDFFYGDEPKFINAVLDKVSRKEE 158 +SE V IA + + PKF+N +L +++ +E Sbjct: 101 VSEAVEIAQELSTDESPKFVNGLLARIAELKE 132 >gi|332530152|ref|ZP_08406101.1| NusB antitermination factor [Hylemonella gracilis ATCC 19624] gi|332040422|gb|EGI76799.1| NusB antitermination factor [Hylemonella gracilis ATCC 19624] Length = 187 Score = 51.6 bits (122), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 43/149 (28%), Positives = 71/149 (47%), Gaps = 14/149 (9%) Query: 6 NKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVD 65 NK LS R +R A+QALYQ ++G + T I F D + + D Sbjct: 35 NKPSRALSGR-SRSREFALQALYQ-HLVGRNATADIDA-----FTRDL-----TGFHKAD 82 Query: 66 LEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEV 125 + ++HG ++ + +D LI L K + + I +I+ G E C VP V Sbjct: 83 AAHYDALLHGCVNEAEALDRLILPLLDRK--LAEISPIERAIMWMGAYEFQHCVDVPWRV 140 Query: 126 IISEYVCIAHDFFYGDEPKFINAVLDKVS 154 +++EY+ +A F D K++NAVL+ ++ Sbjct: 141 VLNEYIELAKSFGGTDGHKYVNAVLNGLA 169 >gi|255971431|ref|ZP_05422017.1| antitermination protein NusB [Enterococcus faecalis T1] gi|255974044|ref|ZP_05424630.1| antitermination protein NusB [Enterococcus faecalis T2] gi|256617900|ref|ZP_05474746.1| antitermination protein NusB [Enterococcus faecalis ATCC 4200] gi|256761733|ref|ZP_05502313.1| antitermination protein NusB [Enterococcus faecalis T3] gi|256957069|ref|ZP_05561240.1| antitermination protein NusB [Enterococcus faecalis DS5] gi|256960159|ref|ZP_05564330.1| antitermination protein NusB [Enterococcus faecalis Merz96] gi|256962598|ref|ZP_05566769.1| antitermination protein NusB [Enterococcus faecalis HIP11704] gi|257077865|ref|ZP_05572226.1| antitermination protein NusB [Enterococcus faecalis JH1] gi|257081230|ref|ZP_05575591.1| antitermination protein NusB [Enterococcus faecalis E1Sol] gi|257083886|ref|ZP_05578247.1| antitermination protein NusB [Enterococcus faecalis Fly1] gi|257086336|ref|ZP_05580697.1| antitermination protein NusB [Enterococcus faecalis D6] gi|257089386|ref|ZP_05583747.1| antitermination protein nusB [Enterococcus faecalis CH188] gi|257415595|ref|ZP_05592589.1| antitermination protein NusB [Enterococcus faecalis AR01/DG] gi|257418568|ref|ZP_05595562.1| transcription antitermination protein nusB [Enterococcus faecalis T11] gi|257421226|ref|ZP_05598216.1| transcription antitermination protein nusB [Enterococcus faecalis X98] gi|294780567|ref|ZP_06745930.1| transcription antitermination factor NusB [Enterococcus faecalis PC1.1] gi|300859628|ref|ZP_07105716.1| transcription antitermination factor NusB [Enterococcus faecalis TUSoD Ef11] gi|255962449|gb|EET94925.1| antitermination protein NusB [Enterococcus faecalis T1] gi|255966916|gb|EET97538.1| antitermination protein NusB [Enterococcus faecalis T2] gi|256597427|gb|EEU16603.1| antitermination protein NusB [Enterococcus faecalis ATCC 4200] gi|256682984|gb|EEU22679.1| antitermination protein NusB [Enterococcus faecalis T3] gi|256947565|gb|EEU64197.1| antitermination protein NusB [Enterococcus faecalis DS5] gi|256950655|gb|EEU67287.1| antitermination protein NusB [Enterococcus faecalis Merz96] gi|256953094|gb|EEU69726.1| antitermination protein NusB [Enterococcus faecalis HIP11704] gi|256985895|gb|EEU73197.1| antitermination protein NusB [Enterococcus faecalis JH1] gi|256989260|gb|EEU76562.1| antitermination protein NusB [Enterococcus faecalis E1Sol] gi|256991916|gb|EEU79218.1| antitermination protein NusB [Enterococcus faecalis Fly1] gi|256994366|gb|EEU81668.1| antitermination protein NusB [Enterococcus faecalis D6] gi|256998198|gb|EEU84718.1| antitermination protein nusB [Enterococcus faecalis CH188] gi|257157423|gb|EEU87383.1| antitermination protein NusB [Enterococcus faecalis ARO1/DG] gi|257160396|gb|EEU90356.1| transcription antitermination protein nusB [Enterococcus faecalis T11] gi|257163050|gb|EEU93010.1| transcription antitermination protein nusB [Enterococcus faecalis X98] gi|294452394|gb|EFG20833.1| transcription antitermination factor NusB [Enterococcus faecalis PC1.1] gi|295113845|emb|CBL32482.1| transcription antitermination factor NusB [Enterococcus sp. 7L76] gi|300850446|gb|EFK78195.1| transcription antitermination factor NusB [Enterococcus faecalis TUSoD Ef11] gi|323480217|gb|ADX79656.1| transcription antitermination factor NusB [Enterococcus faecalis 62] Length = 150 Score = 51.6 bits (122), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 38/141 (26%), Positives = 65/141 (46%), Gaps = 11/141 (7%) Query: 20 RLAAVQALYQIDIIGCSTTEIISEY----ETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 R A+QAL+ +D T + +Y + ++ D+ YL + ++ G Sbjct: 12 REKALQALFPLDFNADLTKQDAIDYALAYDNREIVSEDGEDLVPTYLDL-------LVGG 64 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135 V RK +D +I++ L WS RL I ILR + E++ VP V ++E V ++ Sbjct: 65 VCSRKAELDEVITNHLGNNWSMQRLAKIDIVILRLAIFEMLYVSDVPNIVALNEAVELSK 124 Query: 136 DFFYGDEPKFINAVLDKVSRK 156 + KF+N VL V ++ Sbjct: 125 KYSDDRSRKFVNGVLSNVMKE 145 >gi|213966115|ref|ZP_03394302.1| transcription antitermination protein NusB [Corynebacterium amycolatum SK46] gi|213951213|gb|EEB62608.1| transcription antitermination protein NusB [Corynebacterium amycolatum SK46] Length = 234 Score = 51.6 bits (122), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 36/107 (33%), Positives = 49/107 (45%), Gaps = 5/107 (4%) Query: 45 ETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMIL 104 E + +LDV + E+ I+ GV ID ISS LTE+W RL + Sbjct: 58 ERLEMVRNPDLDVNPI-----AEYTEQIVRGVAAEIIGIDSTISSYLTEEWPLRRLPAVD 112 Query: 105 CSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLD 151 +ILR EL VP V + E V +A ++ +INAVLD Sbjct: 113 RAILRLSTWELFYNSDVPPRVAVVEGVELASEYSTDVAAPYINAVLD 159 >gi|194335654|ref|YP_002017448.1| NusB antitermination factor [Pelodictyon phaeoclathratiforme BU-1] gi|238693383|sp|B4SCZ7|NUSB_PELPB RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|194308131|gb|ACF42831.1| NusB antitermination factor [Pelodictyon phaeoclathratiforme BU-1] Length = 171 Score = 51.6 bits (122), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 42/154 (27%), Positives = 72/154 (46%), Gaps = 15/154 (9%) Query: 13 SHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVI 72 ++RR I R +QALY I+I T AD +++F ++ Sbjct: 3 TYRRQI-REKILQALYTIEIRDTDIDSAAGWLLTEEILADPNA----------MKFFNML 51 Query: 73 IHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVC 132 + + + + ID I T W SR+ +I +I+R + E++ C +P +V I+E + Sbjct: 52 LKNIKEHMEEIDRYIVKH-TFNWDMSRIAIIDKNIIRMALTEILYCEDIPPKVSINEAIE 110 Query: 133 IAHDFFYGDE-PKFINAVLDKVSRKEEIKRSGCV 165 IA F D+ KF+N +LD + ++K G V Sbjct: 111 IAKKFNSTDKSSKFVNGILDAIFN--DLKNEGKV 142 >gi|153208973|ref|ZP_01947179.1| transcription antitermination factor NusB [Coxiella burnetii 'MSU Goat Q177'] gi|165924151|ref|ZP_02219983.1| transcription antitermination factor NusB [Coxiella burnetii RSA 334] gi|212219014|ref|YP_002305801.1| transcription antitermination protein NusB [Coxiella burnetii CbuK_Q154] gi|238055349|sp|B6J8Q7|NUSB_COXB1 RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|120575573|gb|EAX32197.1| transcription antitermination factor NusB [Coxiella burnetii 'MSU Goat Q177'] gi|165916410|gb|EDR35014.1| transcription antitermination factor NusB [Coxiella burnetii RSA 334] gi|212013276|gb|ACJ20656.1| utilization substance protein B [Coxiella burnetii CbuK_Q154] Length = 138 Score = 51.6 bits (122), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 40/139 (28%), Positives = 68/139 (48%), Gaps = 13/139 (9%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 R AR A+QALYQ +IS++ +DTE+ +F+ ++ G Sbjct: 6 RHNARRYALQALYQWFFCETKPDALISQFMEEHDLSDTEV-----------AYFKEVVTG 54 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135 + ID L+++ L K S L+ + S+LR + EL+ VP +V+I E + + Sbjct: 55 TIQHVAIIDELMTAHLDRK--ISALNPVELSVLRLSIYELLHRKEVPYKVVIDEALELVK 112 Query: 136 DFFYGDEPKFINAVLDKVS 154 +F K++NA+LD +S Sbjct: 113 EFGAEAGHKYVNAILDVLS 131 >gi|225420435|ref|ZP_03762738.1| hypothetical protein CLOSTASPAR_06780 [Clostridium asparagiforme DSM 15981] gi|225040922|gb|EEG51168.1| hypothetical protein CLOSTASPAR_06780 [Clostridium asparagiforme DSM 15981] Length = 197 Score = 51.6 bits (122), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 41/151 (27%), Positives = 65/151 (43%), Gaps = 13/151 (8%) Query: 27 LYQIDIIGCSTTEIISEYETYRFCADTELDVES----VYLHV------DLEWFRVIIHGV 76 L+ D S E+ + + Y F A E DV+ LH D + + G+ Sbjct: 14 LFSADFY-PSAEEVKEQLKQY-FNAPEEDDVDPKGDVTILHKVEIKEEDSRYLEKRVAGI 71 Query: 77 MDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHD 136 MD+ ID I+ W R+ + +ILR + E+ S+P +V I+E V +A Sbjct: 72 MDKIPEIDGQINEVAA-GWRTKRMGKVELTILRLALFEMKYDDSIPEKVAINEAVELAKK 130 Query: 137 FFYGDEPKFINAVLDKVSRKEEIKRSGCVSA 167 F + P F+N +L K + K + G A Sbjct: 131 FGGDESPSFVNGILAKFAGKAAGRTGGEAEA 161 >gi|260578799|ref|ZP_05846706.1| N utilization substance protein B family protein (protein NusB) [Corynebacterium jeikeium ATCC 43734] gi|258603097|gb|EEW16367.1| N utilization substance protein B family protein (protein NusB) [Corynebacterium jeikeium ATCC 43734] Length = 205 Score = 51.6 bits (122), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 42/155 (27%), Positives = 69/155 (44%), Gaps = 11/155 (7%) Query: 5 DNKKDLKLSHRRG----IARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESV 60 DNK S +R AR AV L++ + EI+ E D+ V+ V Sbjct: 8 DNKAAKAASFKRHGSRYKARRRAVDILFEAEFRDIDPVEIVEE--RISLAKDSANQVKPV 65 Query: 61 YLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHS 120 E+ + I+ GV +D I+ L+ W RL + ++LR EL Sbjct: 66 P-----EYTQQIVPGVATNLDALDEAIALHLSSDWQLDRLPAVDRAVLRVAAWELKFNDD 120 Query: 121 VPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSR 155 VP +V + E V +A ++ + P +I+AVLD +++ Sbjct: 121 VPPQVAVVEGVELASEYSHDKAPSYIHAVLDGINK 155 >gi|307636683|gb|ADN79133.1| Transcription termination protein [Helicobacter pylori 908] gi|325995267|gb|ADZ50672.1| Transcription termination protein [Helicobacter pylori 2018] gi|325996871|gb|ADZ49079.1| Transcription termination protein [Helicobacter pylori 2017] Length = 138 Score = 51.6 bits (122), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 30/85 (35%), Positives = 47/85 (55%), Gaps = 2/85 (2%) Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131 + +GV++R ID LI L + W F RL + +ILR G E I +II+E + Sbjct: 49 LFNGVLERINEIDALIEPHLKD-WDFKRLGSMEKAILRLGAYE-IGFTPTQNPIIINECI 106 Query: 132 CIAHDFFYGDEPKFINAVLDKVSRK 156 + + + PKF+NA+LD +S+K Sbjct: 107 ELGKLYAEPNTPKFLNAILDSLSKK 131 >gi|324998653|ref|ZP_08119765.1| NusB antitermination factor [Pseudonocardia sp. P1] Length = 139 Score = 51.6 bits (122), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 38/139 (27%), Positives = 65/139 (46%), Gaps = 13/139 (9%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 R AR A+ L++ + G + E++ T R D V+ E+ ++ G Sbjct: 4 RTKARKRALDILFEAEARGEAPLEVL----TARRETDDAPPVQ--------EYAARLVEG 51 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135 V ++ ID L++ E W+ R+ + +LR GV EL+ V V I+E V +A Sbjct: 52 VATHRERIDQLLAEH-AEGWTVDRMPAVDRGLLRIGVYELLWVDDVDDPVAITEAVELAR 110 Query: 136 DFFYGDEPKFINAVLDKVS 154 D P+++N VL ++S Sbjct: 111 TLSTDDSPRYVNGVLGQIS 129 >gi|254455633|ref|ZP_05069062.1| antitermination protein NusB [Candidatus Pelagibacter sp. HTCC7211] gi|207082635|gb|EDZ60061.1| antitermination protein NusB [Candidatus Pelagibacter sp. HTCC7211] Length = 134 Score = 51.6 bits (122), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 28/108 (25%), Positives = 55/108 (50%), Gaps = 3/108 (2%) Query: 49 FCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSIL 108 + D LD H ++ + I+ G ++R I + + L ++ F LD + +IL Sbjct: 24 YNEDNNLDFPK---HRFKKFIKDIVLGTIERNDLILSELDTKLGNEFVFENLDKVFQTIL 80 Query: 109 RAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRK 156 +A E + +V + +II EY+ ++ F + K++NA+LD + +K Sbjct: 81 KAATYEFLYKPNVSINIIIKEYLNSSNFFLENSQTKYLNALLDNIGKK 128 >gi|258627344|ref|ZP_05722128.1| N utilization substance protein B [Vibrio mimicus VM603] gi|262166342|ref|ZP_06034079.1| transcription termination protein NusB [Vibrio mimicus VM223] gi|258580382|gb|EEW05347.1| N utilization substance protein B [Vibrio mimicus VM603] gi|262026058|gb|EEY44726.1| transcription termination protein NusB [Vibrio mimicus VM223] Length = 152 Score = 51.6 bits (122), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 43/153 (28%), Positives = 72/153 (47%), Gaps = 16/153 (10%) Query: 10 LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVES--------VY 61 +K + RR AR A+QA+Y I T E ++ E +F + D E Sbjct: 1 MKPAARRN-ARQFALQAIYSWQI----TKENVATIEE-QFLTSGKYDEEEHRAAEPALAA 54 Query: 62 LHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSV 121 D+ +FR ++ GV+ +D + ++ LDM+ ++LR + E+ V Sbjct: 55 PETDVSYFRDLLAGVVLNHTELDSKLRPFVSR--PMQDLDMMELALLRLAMYEMTRREDV 112 Query: 122 PVEVIISEYVCIAHDFFYGDEPKFINAVLDKVS 154 P +V+I+E + +A F D KF+N VLDK + Sbjct: 113 PYKVVINEAIELAKVFAAEDSHKFVNGVLDKAA 145 >gi|182683397|ref|YP_001835144.1| transcription antitermination protein NusB [Streptococcus pneumoniae CGSP14] gi|182628731|gb|ACB89679.1| transcription antitermination protein NusB [Streptococcus pneumoniae CGSP14] Length = 146 Score = 51.6 bits (122), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 31/99 (31%), Positives = 51/99 (51%), Gaps = 2/99 (2%) Query: 61 YLHVDLEWFRV-IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECH 119 Y V L F + ++ GV +K+ +D I+ L W+ RL ++ ++LR GV E I Sbjct: 49 YTDVQLPAFLIDLVSGVQAKKEELDKQITQHLKAGWTIERLTLVERNLLRLGVFE-ITSF 107 Query: 120 SVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEE 158 P V I+E + +A DF +FIN +L + +E+ Sbjct: 108 DTPQLVAINEAIELAKDFSDQKSARFINGLLSQFVTEEQ 146 >gi|170693624|ref|ZP_02884782.1| NusB antitermination factor [Burkholderia graminis C4D1M] gi|170141406|gb|EDT09576.1| NusB antitermination factor [Burkholderia graminis C4D1M] Length = 144 Score = 51.6 bits (122), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 42/147 (28%), Positives = 65/147 (44%), Gaps = 15/147 (10%) Query: 10 LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF 69 +K + RR +R A Q LYQ + G EI D +L + D E Sbjct: 1 MKSARRR--SRELATQGLYQWLLSGSPGGEI-----------DAQLRGAQGFDKADHEHL 47 Query: 70 RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISE 129 I+HGV+ + + I+ CL +L + ++L EL +P V+I+E Sbjct: 48 DAILHGVIRDSEALSADIAPCLDR--PIEQLSPVERAVLLVAAFELKNHVDIPYRVVINE 105 Query: 130 YVCIAHDFFYGDEPKFINAVLDKVSRK 156 V +A F D K++N VLDK++ K Sbjct: 106 AVELAKTFGGVDGYKYVNGVLDKLAAK 132 >gi|15642265|ref|NP_231898.1| transcription antitermination protein NusB [Vibrio cholerae O1 biovar El Tor str. N16961] gi|121586175|ref|ZP_01675966.1| N utilization substance protein B [Vibrio cholerae 2740-80] gi|121729760|ref|ZP_01682199.1| N utilization substance protein B [Vibrio cholerae V52] gi|147673228|ref|YP_001217781.1| transcription antitermination protein NusB [Vibrio cholerae O395] gi|153217373|ref|ZP_01951124.1| N utilization substance protein B [Vibrio cholerae 1587] gi|153803017|ref|ZP_01957603.1| N utilization substance protein B [Vibrio cholerae MZO-3] gi|153824256|ref|ZP_01976923.1| N utilization substance protein B [Vibrio cholerae B33] gi|153828248|ref|ZP_01980915.1| N utilization substance protein B [Vibrio cholerae 623-39] gi|227082391|ref|YP_002810942.1| N utilization substance protein B [Vibrio cholerae M66-2] gi|229507660|ref|ZP_04397165.1| transcription termination protein NusB [Vibrio cholerae BX 330286] gi|229512145|ref|ZP_04401624.1| transcription termination protein NusB [Vibrio cholerae B33] gi|229513908|ref|ZP_04403370.1| transcription termination protein NusB [Vibrio cholerae TMA 21] gi|229519280|ref|ZP_04408723.1| transcription termination protein NusB [Vibrio cholerae RC9] gi|229522212|ref|ZP_04411629.1| transcription termination protein NusB [Vibrio cholerae TM 11079-80] gi|229528732|ref|ZP_04418122.1| transcription termination protein NusB [Vibrio cholerae 12129(1)] gi|229607164|ref|YP_002877812.1| transcription antitermination protein NusB [Vibrio cholerae MJ-1236] gi|254286062|ref|ZP_04961023.1| N utilization substance protein B [Vibrio cholerae AM-19226] gi|254849396|ref|ZP_05238746.1| transcription antitermination protein NusB [Vibrio cholerae MO10] gi|255747039|ref|ZP_05420984.1| transcription termination protein NusB [Vibrio cholera CIRS 101] gi|262161417|ref|ZP_06030527.1| transcription termination protein NusB [Vibrio cholerae INDRE 91/1] gi|262168266|ref|ZP_06035963.1| transcription termination protein NusB [Vibrio cholerae RC27] gi|262190236|ref|ZP_06048510.1| transcription termination protein NusB [Vibrio cholerae CT 5369-93] gi|297580910|ref|ZP_06942835.1| transcription antitermination protein NusB [Vibrio cholerae RC385] gi|298500359|ref|ZP_07010164.1| transcription antitermination factor NusB [Vibrio cholerae MAK 757] gi|22095970|sp|Q9KPU5|NUSB_VIBCH RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|172047603|sp|A5F5Z6|NUSB_VIBC3 RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|254772665|sp|C3LQ39|NUSB_VIBCM RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|9656829|gb|AAF95411.1| N utilization substance protein B [Vibrio cholerae O1 biovar El Tor str. N16961] gi|121549587|gb|EAX59611.1| N utilization substance protein B [Vibrio cholerae 2740-80] gi|121628511|gb|EAX60997.1| N utilization substance protein B [Vibrio cholerae V52] gi|124113619|gb|EAY32439.1| N utilization substance protein B [Vibrio cholerae 1587] gi|124121460|gb|EAY40203.1| N utilization substance protein B [Vibrio cholerae MZO-3] gi|126518222|gb|EAZ75447.1| N utilization substance protein B [Vibrio cholerae B33] gi|146315111|gb|ABQ19650.1| N utilization substance protein B [Vibrio cholerae O395] gi|148876337|gb|EDL74472.1| N utilization substance protein B [Vibrio cholerae 623-39] gi|150423972|gb|EDN15912.1| N utilization substance protein B [Vibrio cholerae AM-19226] gi|227010279|gb|ACP06491.1| N utilization substance protein B [Vibrio cholerae M66-2] gi|227014163|gb|ACP10373.1| N utilization substance protein B [Vibrio cholerae O395] gi|229332506|gb|EEN97992.1| transcription termination protein NusB [Vibrio cholerae 12129(1)] gi|229341137|gb|EEO06142.1| transcription termination protein NusB [Vibrio cholerae TM 11079-80] gi|229343969|gb|EEO08944.1| transcription termination protein NusB [Vibrio cholerae RC9] gi|229349089|gb|EEO14046.1| transcription termination protein NusB [Vibrio cholerae TMA 21] gi|229352110|gb|EEO17051.1| transcription termination protein NusB [Vibrio cholerae B33] gi|229355165|gb|EEO20086.1| transcription termination protein NusB [Vibrio cholerae BX 330286] gi|229369819|gb|ACQ60242.1| transcription termination protein NusB [Vibrio cholerae MJ-1236] gi|254845101|gb|EET23515.1| transcription antitermination protein NusB [Vibrio cholerae MO10] gi|255735441|gb|EET90841.1| transcription termination protein NusB [Vibrio cholera CIRS 101] gi|262023158|gb|EEY41862.1| transcription termination protein NusB [Vibrio cholerae RC27] gi|262028728|gb|EEY47382.1| transcription termination protein NusB [Vibrio cholerae INDRE 91/1] gi|262033881|gb|EEY52347.1| transcription termination protein NusB [Vibrio cholerae CT 5369-93] gi|297534736|gb|EFH73572.1| transcription antitermination protein NusB [Vibrio cholerae RC385] gi|297541052|gb|EFH77106.1| transcription antitermination factor NusB [Vibrio cholerae MAK 757] gi|327484782|gb|AEA79189.1| Transcription termination protein NusB [Vibrio cholerae LMA3894-4] Length = 156 Score = 51.6 bits (122), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 43/153 (28%), Positives = 72/153 (47%), Gaps = 16/153 (10%) Query: 10 LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVES--------VY 61 +K + RR AR A+QA+Y I T E ++ E +F + D E Sbjct: 5 VKPAARRN-ARQFALQAIYSWQI----TKENVATIEE-QFLTSGKYDEEEHRAAEPALAA 58 Query: 62 LHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSV 121 D+ +FR ++ GV+ +D + ++ LDM+ ++LR + E+ V Sbjct: 59 PETDVSYFRDLLAGVVLNHNELDSKLRPFVSR--PMQDLDMMELALLRLAMYEMTRREDV 116 Query: 122 PVEVIISEYVCIAHDFFYGDEPKFINAVLDKVS 154 P +V+I+E + +A F D KF+N VLDK + Sbjct: 117 PYKVVINEAIELAKVFAAEDSHKFVNGVLDKAA 149 >gi|68536104|ref|YP_250809.1| transcription antitermination protein NusB [Corynebacterium jeikeium K411] gi|119390762|sp|Q4JVG6|NUSB_CORJK RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|68263703|emb|CAI37191.1| N utilization substance protein B [Corynebacterium jeikeium K411] Length = 202 Score = 51.6 bits (122), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 42/155 (27%), Positives = 69/155 (44%), Gaps = 11/155 (7%) Query: 5 DNKKDLKLSHRRG----IARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESV 60 DNK S +R AR AV L++ + EI+ E D+ V+ V Sbjct: 8 DNKAAKAASFKRHGSRYKARRRAVDILFEAEFRDIDPVEIVEE--RISLAKDSANQVKPV 65 Query: 61 YLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHS 120 E+ + I+ GV +D I+ L+ W RL + ++LR EL Sbjct: 66 P-----EYTQQIVPGVATNLDALDEAIALHLSSDWQLDRLPAVDRAVLRVAAWELKFNDD 120 Query: 121 VPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSR 155 VP +V + E V +A ++ + P +I+AVLD +++ Sbjct: 121 VPPQVAVVEGVELASEYSHDKAPSYIHAVLDGINK 155 >gi|293392569|ref|ZP_06636889.1| transcription termination/antitermination factor NusB [Serratia odorifera DSM 4582] gi|291424971|gb|EFE98180.1| transcription termination/antitermination factor NusB [Serratia odorifera DSM 4582] Length = 117 Score = 51.6 bits (122), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 33/102 (32%), Positives = 53/102 (51%), Gaps = 6/102 (5%) Query: 53 TELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGV 112 TE DV+ V D+ +FR ++ GV +D L++ L+ + L + ++LR + Sbjct: 15 TEQDVKDV----DIAYFRELLSGVAVNAGTLDALMAPYLSRQ--LEELGQVEKAVLRIAL 68 Query: 113 LELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVS 154 EL VP +V I+E + +A F D KF+N VLDK + Sbjct: 69 FELKMREDVPYKVAINEAIELAKTFGAEDSHKFVNGVLDKAA 110 >gi|268608467|ref|ZP_06142194.1| transcription termination factor [Ruminococcus flavefaciens FD-1] Length = 138 Score = 51.2 bits (121), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 27/93 (29%), Positives = 51/93 (54%), Gaps = 1/93 (1%) Query: 70 RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISE 129 + I+ G + + +D +I+ ++ S SR+ + +ILR + E + + P+ ISE Sbjct: 44 KKIVEGTLAHAEELDSIIAGY-SKSRSLSRISKLNIAILRIAIYESLYDDNTPMNAAISE 102 Query: 130 YVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRS 162 + +A+ + Y ++ KFIN VL SR ++ K S Sbjct: 103 AINLANTYSYNEDSKFINGVLGAFSRDQKQKES 135 >gi|237743358|ref|ZP_04573839.1| transcription antitermination protein NusB [Fusobacterium sp. 7_1] gi|229433137|gb|EEO43349.1| transcription antitermination protein NusB [Fusobacterium sp. 7_1] Length = 157 Score = 51.2 bits (121), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 39/150 (26%), Positives = 76/150 (50%), Gaps = 12/150 (8%) Query: 18 IARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVM 77 +AR + ++ ++ G S+ E+ ++ Y D E + LE+ + I+G++ Sbjct: 18 LAREEVFKLVFGAELTGSSSDELKQDFSIY-LQNDEEFI--NALSEKQLEFIKNSINGIV 74 Query: 78 DRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDF 137 + +I +I T+ W++ R+ +I S+L G E + + P+EVI +E V +A + Sbjct: 75 ENYDNIKDVIKKN-TQNWTYERIGVIERSLLIVGTYEFL-IKNTPIEVIANEIVELAKE- 131 Query: 138 FYGDEP--KFINAVLDKVSRKEEIKRSGCV 165 YG+E +FIN +L + E+ K G + Sbjct: 132 -YGNEKSYEFINGILANI---EKAKNKGTI 157 >gi|32473208|ref|NP_866202.1| transcription antitermination protein NusB [Rhodopirellula baltica SH 1] gi|39931772|sp|Q7USA9|NUSB_RHOBA RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|32397887|emb|CAD73888.1| probable N utilization substance protein B homolog [Rhodopirellula baltica SH 1] gi|327540459|gb|EGF27044.1| transcription antitermination protein NusB [Rhodopirellula baltica WH47] Length = 145 Score = 51.2 bits (121), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 25/82 (30%), Positives = 46/82 (56%), Gaps = 2/82 (2%) Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131 ++ G M R+ ID ++ L+ W+ R+ + ++LR G E++ P +V ISE + Sbjct: 54 LLDGTMARRDDIDAKLTK-LSTNWALHRMPVTDRNVLRLGAYEIL-YSGTPGQVAISEAL 111 Query: 132 CIAHDFFYGDEPKFINAVLDKV 153 +A + + P+FIN VLD++ Sbjct: 112 TLAKRYGGENSPRFINGVLDRL 133 >gi|332364657|gb|EGJ42426.1| N utilization substance protein B [Streptococcus sanguinis SK1059] Length = 143 Score = 51.2 bits (121), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 43/150 (28%), Positives = 73/150 (48%), Gaps = 19/150 (12%) Query: 9 DLKLSHRRGIARLAAVQAL----YQIDII-GCSTTEIISEYETYRFCADTELDVESVYLH 63 D+ L RRG+ R A QAL Y+ D++ C + Y + D E D + Sbjct: 3 DILLESRRGL-RQRAFQALMSLEYEGDLVEACRFS--------YSYDKDEEADKAA---E 50 Query: 64 VDLEWFRV-IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVP 122 D+ F + ++ GV+ K +D I+ L + W+ RL ++ +ILR G+ E+ E + P Sbjct: 51 ADIPAFLLNLVSGVVQSKDDLDKKIAQHLKKGWTVDRLTLVEKNILRLGIFEITEFDT-P 109 Query: 123 VEVIISEYVCIAHDFFYGDEPKFINAVLDK 152 V ++E + ++ F KFIN +L + Sbjct: 110 QLVAVNEAIELSKQFSDEKSSKFINGILSQ 139 >gi|226953323|ref|ZP_03823787.1| transcription antitermination protein NusB [Acinetobacter sp. ATCC 27244] gi|262373826|ref|ZP_06067104.1| transcription antitermination factor NusB [Acinetobacter junii SH205] gi|226835949|gb|EEH68332.1| transcription antitermination protein NusB [Acinetobacter sp. ATCC 27244] gi|262311579|gb|EEY92665.1| transcription antitermination factor NusB [Acinetobacter junii SH205] Length = 149 Score = 51.2 bits (121), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 32/100 (32%), Positives = 53/100 (53%), Gaps = 2/100 (2%) Query: 57 VESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELI 116 VE+ VDL ++ ++ V+ + + +D L+ L + S LD + + LR G EL Sbjct: 42 VENAMHKVDLNYYHELLTQVVAQHEALDELLIPVLDRE--LSALDGVELATLRLGAYELR 99 Query: 117 ECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRK 156 + VP V++ E + +A F D K+IN VLD++S K Sbjct: 100 DHLEVPYRVVLDEAIELAKHFGGADSHKYINGVLDRLSSK 139 >gi|212702193|ref|ZP_03310321.1| hypothetical protein DESPIG_00204 [Desulfovibrio piger ATCC 29098] gi|212674398|gb|EEB34881.1| hypothetical protein DESPIG_00204 [Desulfovibrio piger ATCC 29098] Length = 157 Score = 51.2 bits (121), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 40/157 (25%), Positives = 69/157 (43%), Gaps = 10/157 (6%) Query: 11 KLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFR 70 K + RRG R A Q LY + ++ E + + D + + E L W Sbjct: 5 KSASRRG-ERAQAFQVLYGLSFADATSLEDV--RRAFLQSPDHQ-ESEEGELPSGFSW-- 58 Query: 71 VIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEY 130 ++ GV R+ +D IS + W R+ + ++LR + EL+ VP +V I+E Sbjct: 59 DLVQGVWSRRDELDKTISR-FSRNWRVDRMGRVELTLLRLAMYELLYRQDVPAKVAINEA 117 Query: 131 VCIAHDFFYGDEPKFINAVLDKVSRKEEIKRSGCVSA 167 + + F + F+N +LD ++ E G +SA Sbjct: 118 LELTRQFGEDNATSFVNGILDAAAKALE---KGSLSA 151 >gi|295093397|emb|CBK82488.1| transcription antitermination factor NusB [Coprococcus sp. ART55/1] Length = 159 Score = 51.2 bits (121), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 33/103 (32%), Positives = 55/103 (53%), Gaps = 2/103 (1%) Query: 63 HVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVP 122 + D ++ + ++ +K ID +IS ++E W R+ +ILR GV E+ S+P Sbjct: 53 NEDRDYITTKVKNIISKKAEIDEIISQ-ISEGWKLPRIGKEELAILRLGVYEVKYDESIP 111 Query: 123 VEVIISEYVCIAHDFFYGDEPKFINAVLDK-VSRKEEIKRSGC 164 +V I+E V +A + KF+NA+L K VS ++ K SG Sbjct: 112 EKVAINEAVELAKKYCDASASKFVNALLAKLVSGDKDKKESGA 154 >gi|70726392|ref|YP_253306.1| transcription antitermination protein NusB [Staphylococcus haemolyticus JCSC1435] gi|119390830|sp|Q4L6M5|NUSB_STAHJ RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|68447116|dbj|BAE04700.1| unnamed protein product [Staphylococcus haemolyticus JCSC1435] Length = 128 Score = 51.2 bits (121), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 43/139 (30%), Positives = 66/139 (47%), Gaps = 13/139 (9%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 R +R+ A Q L+Q+++ T I+E F D E +++ ++H W ++ G Sbjct: 3 RKESRMQAFQTLFQLEMKDTELT--INE--AINFIKDDEPELDFDFIH----W---LVTG 51 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135 V D + +D I L + WS RL ILR EL+ P +VII+E V +A Sbjct: 52 VKDHEPVLDDTIKPHLKD-WSLQRLLKTDRIILRMATFELLHS-DTPPKVIINEAVELAK 109 Query: 136 DFFYGDEPKFINAVLDKVS 154 F + KFIN VL + Sbjct: 110 QFSDDEHYKFINGVLSNIK 128 >gi|317176809|dbj|BAJ54598.1| transcription antitermination protein NusB [Helicobacter pylori F16] Length = 138 Score = 51.2 bits (121), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 41/141 (29%), Positives = 68/141 (48%), Gaps = 13/141 (9%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 R AR A V+ LY + S E + A + L+ + + + L + + +G Sbjct: 4 RTQARGAVVELLYAFE----------SGNEEIKKIASSMLEEKKIK-NNQLAFALSLFNG 52 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135 V+++ ID LI L + W F RL + +ILR G E I +II+E + + Sbjct: 53 VLEKLNEIDALIEPHLKD-WDFKRLGSMEKAILRLGTYE-IGFTPTQNPIIINECIELGK 110 Query: 136 DFFYGDEPKFINAVLDKVSRK 156 + + PKF+NA+LD +S+K Sbjct: 111 LYAEPNTPKFLNAILDSLSKK 131 >gi|303255410|ref|ZP_07341476.1| transcription antitermination protein NusB [Streptococcus pneumoniae BS455] gi|303259505|ref|ZP_07345482.1| transcription antitermination protein NusB [Streptococcus pneumoniae SP-BS293] gi|303262368|ref|ZP_07348311.1| transcription antitermination protein NusB [Streptococcus pneumoniae SP14-BS292] gi|303264786|ref|ZP_07350703.1| transcription antitermination protein NusB [Streptococcus pneumoniae BS397] gi|303266625|ref|ZP_07352510.1| transcription antitermination protein NusB [Streptococcus pneumoniae BS457] gi|303268858|ref|ZP_07354645.1| transcription antitermination protein NusB [Streptococcus pneumoniae BS458] gi|301801342|emb|CBW34025.1| N utilization substance protein B homolog (NusB protein) [Streptococcus pneumoniae INV200] gi|302597655|gb|EFL64735.1| transcription antitermination protein NusB [Streptococcus pneumoniae BS455] gi|302636467|gb|EFL66959.1| transcription antitermination protein NusB [Streptococcus pneumoniae SP14-BS292] gi|302639439|gb|EFL69897.1| transcription antitermination protein NusB [Streptococcus pneumoniae SP-BS293] gi|302641639|gb|EFL71999.1| transcription antitermination protein NusB [Streptococcus pneumoniae BS458] gi|302643869|gb|EFL74131.1| transcription antitermination protein NusB [Streptococcus pneumoniae BS457] gi|302645653|gb|EFL75883.1| transcription antitermination protein NusB [Streptococcus pneumoniae BS397] Length = 140 Score = 51.2 bits (121), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 31/99 (31%), Positives = 51/99 (51%), Gaps = 2/99 (2%) Query: 61 YLHVDLEWFRV-IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECH 119 Y V L F + ++ GV +K+ +D I+ L W+ RL ++ ++LR GV E I Sbjct: 43 YTDVQLPAFLIDLVSGVQAKKEELDKQITQHLKAGWTIERLTLVERNLLRLGVFE-ITSF 101 Query: 120 SVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEE 158 P V I+E + +A DF +FIN +L + +E+ Sbjct: 102 DTPQLVAINEAIELAKDFSDQKSARFINGLLSQFVTEEQ 140 >gi|218888175|ref|YP_002437496.1| NusB antitermination factor [Desulfovibrio vulgaris str. 'Miyazaki F'] gi|226738898|sp|B8DJF1|NUSB_DESVM RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|218759129|gb|ACL10028.1| NusB antitermination factor [Desulfovibrio vulgaris str. 'Miyazaki F'] Length = 165 Score = 51.2 bits (121), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 26/90 (28%), Positives = 47/90 (52%), Gaps = 1/90 (1%) Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131 +IHGV + +D +S ++ W R+ + ++LR V E++ VP +V ++E + Sbjct: 71 VIHGVWKTQAELDEAVSG-FSQNWRVERMGRVELTLLRIAVYEMLFRDDVPAKVAMNEAI 129 Query: 132 CIAHDFFYGDEPKFINAVLDKVSRKEEIKR 161 ++ F + FIN +LD V+R E R Sbjct: 130 ELSKQFGDDNSRGFINGILDAVARAVESGR 159 >gi|222153656|ref|YP_002562833.1| transcription antitermination protein NusB [Streptococcus uberis 0140J] gi|254772659|sp|B9DVJ4|NUSB_STRU0 RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|222114469|emb|CAR43313.1| N utilization substance protein B homolog (NusB protein) [Streptococcus uberis 0140J] Length = 142 Score = 51.2 bits (121), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 41/142 (28%), Positives = 69/142 (48%), Gaps = 18/142 (12%) Query: 15 RRGIARLAAVQALYQIDIIG--CSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVI 72 RR + R A QAL+ ++ G S ++ +Y+ +D E D+ + L + Sbjct: 9 RRDL-RERAFQALFNMEHGGDFLSASQFAYDYDK---VSDQEHDIPAFLL--------TL 56 Query: 73 IHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVC 132 ++GV++ K +D +I L WS RL + ++LR G+ E+ P V ++E + Sbjct: 57 VNGVVNHKDELDAIIKEHLKAGWSIERLTLTDRTMLRLGLYEIKFFEETPDRVALNEIIE 116 Query: 133 IAHDFFYGDE--PKFINAVLDK 152 IA Y DE KFIN +L + Sbjct: 117 IAKK--YSDETSAKFINGLLSQ 136 >gi|262371010|ref|ZP_06064333.1| transcription termination L factor [Acinetobacter johnsonii SH046] gi|262314086|gb|EEY95130.1| transcription termination L factor [Acinetobacter johnsonii SH046] Length = 152 Score = 51.2 bits (121), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 38/136 (27%), Positives = 63/136 (46%), Gaps = 13/136 (9%) Query: 19 ARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMD 78 AR AVQ +Y+ + EI + VE+ VDL ++ ++ V+ Sbjct: 15 ARRFAVQGIYEWQMSHNPVHEI-----------EARTRVENAMHKVDLSYYHELLTQVVA 63 Query: 79 RKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFF 138 + +D L+ L + S LD + + LR G EL E +P V++ E + +A F Sbjct: 64 NHEALDALLIPVLDRE--VSALDGVELATLRLGAYELKEHLEIPYRVVLDEAIELAKHFG 121 Query: 139 YGDEPKFINAVLDKVS 154 D K+IN VLD+++ Sbjct: 122 GADSHKYINGVLDRLA 137 >gi|229524269|ref|ZP_04413674.1| transcription termination protein NusB [Vibrio cholerae bv. albensis VL426] gi|229337850|gb|EEO02867.1| transcription termination protein NusB [Vibrio cholerae bv. albensis VL426] Length = 156 Score = 51.2 bits (121), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 43/153 (28%), Positives = 72/153 (47%), Gaps = 16/153 (10%) Query: 10 LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVES--------VY 61 +K + RR AR A+QA+Y I T E ++ E +F + D E Sbjct: 5 VKPAARRN-ARQFALQAIYSWQI----TKENVATIEE-QFLTSGKYDEEEHRAAEPALAA 58 Query: 62 LHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSV 121 D+ +FR ++ GV+ +D + ++ LDM+ ++LR + E+ V Sbjct: 59 PETDVAYFRDLLAGVVLNHNELDSKLRPFVSR--PMQDLDMMELALLRLAMYEMTRREDV 116 Query: 122 PVEVIISEYVCIAHDFFYGDEPKFINAVLDKVS 154 P +V+I+E + +A F D KF+N VLDK + Sbjct: 117 PYKVVINEAIELAKVFAAEDSHKFVNGVLDKAA 149 >gi|328956982|ref|YP_004374368.1| transcription antitermination protein NusB [Carnobacterium sp. 17-4] gi|328673306|gb|AEB29352.1| transcription antitermination protein NusB [Carnobacterium sp. 17-4] Length = 147 Score = 51.2 bits (121), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 41/140 (29%), Positives = 72/140 (51%), Gaps = 14/140 (10%) Query: 15 RRGIARLAAVQALYQIDIIGCSTTEIISEYETYR--FCADTEL--DVESVYLHVDLEWFR 70 RR I R A+Q+L+Q+ S E +S+ E + ++ EL +VE+V + + Sbjct: 5 RRDI-REKALQSLFQL-----SANEELSKEEAMQQALTSEAELADEVETVLVP---SYLD 55 Query: 71 VIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEY 130 +++ GV++++ ID I + L E WS +RL I+R + E++ VP V ++E Sbjct: 56 LLVSGVLEKQDEIDEKIKAHL-ENWSLNRLAKTDLMIIRIAIFEMMYVSDVPDRVALNEA 114 Query: 131 VCIAHDFFYGDEPKFINAVL 150 + I + KF+N VL Sbjct: 115 LEITKKYSDEKSRKFVNGVL 134 >gi|78046359|ref|YP_362534.1| transcription antitermination protein NusB [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|325928457|ref|ZP_08189648.1| transcription antitermination factor NusB [Xanthomonas perforans 91-118] gi|119390847|sp|Q3BXH9|NUSB_XANC5 RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|78034789|emb|CAJ22434.1| transcription termination factor NusB [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|325541174|gb|EGD12725.1| transcription antitermination factor NusB [Xanthomonas perforans 91-118] Length = 162 Score = 51.2 bits (121), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 38/146 (26%), Positives = 64/146 (43%), Gaps = 16/146 (10%) Query: 25 QALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHID 84 QA+Y I G ++I+++ E + DL +F ++ GV+ + +D Sbjct: 30 QAVYAWQISGGFAKQVIAQFAH-----------EQAHEVADLAYFENLVEGVLSNRAELD 78 Query: 85 LLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPK 144 ++ L S +D I ++LR EL+ VP V+I+E + A F Sbjct: 79 TALTPYLDR--SVEEVDAIERAVLRLAAYELLYRQDVPYRVVINEAIETAKRFGSEHGHT 136 Query: 145 FINAVLDKVS---RKEEIKRSGCVSA 167 ++N VLD+ + RK E SG A Sbjct: 137 YVNGVLDRAAVEWRKVESGASGASGA 162 >gi|297198328|ref|ZP_06915725.1| transcription antitermination factor NusB [Streptomyces sviceus ATCC 29083] gi|197714379|gb|EDY58413.1| transcription antitermination factor NusB [Streptomyces sviceus ATCC 29083] Length = 144 Score = 51.2 bits (121), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 25/82 (30%), Positives = 44/82 (53%), Gaps = 1/82 (1%) Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131 ++ G + Q ID LI+ + W+ R+ ++ +ILR G ELI P V++ E V Sbjct: 52 LVEGYAEHAQRIDELIAQY-SVGWTLDRMPVVDRNILRLGAYELIWADETPDAVVLDEMV 110 Query: 132 CIAHDFFYGDEPKFINAVLDKV 153 +A +F + P F+N +L ++ Sbjct: 111 QLAKEFSTDESPSFVNGLLGRL 132 >gi|254391339|ref|ZP_05006543.1| transcription antitermination protein NusB [Streptomyces clavuligerus ATCC 27064] gi|294811554|ref|ZP_06770197.1| Transcription antitermination protein NusB [Streptomyces clavuligerus ATCC 27064] gi|326440061|ref|ZP_08214795.1| transcription antitermination protein NusB [Streptomyces clavuligerus ATCC 27064] gi|197705030|gb|EDY50842.1| transcription antitermination protein NusB [Streptomyces clavuligerus ATCC 27064] gi|294324153|gb|EFG05796.1| Transcription antitermination protein NusB [Streptomyces clavuligerus ATCC 27064] Length = 142 Score = 51.2 bits (121), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 34/137 (24%), Positives = 60/137 (43%), Gaps = 9/137 (6%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 R AR A Q L++ D S +++++ + + V + ++ G Sbjct: 4 RNKARKRAFQILFEADQRDVSVQTVLADWIRHSRTDTRQPPVSEYTME--------LVEG 55 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135 ID LI++ E W R+ ++ +ILR G EL+ P V+I E V +A Sbjct: 56 YAQYAPRIDELIATY-AEGWDLDRMPVVDRNILRLGTYELVWVDGTPDAVVIDEAVELAK 114 Query: 136 DFFYGDEPKFINAVLDK 152 +F + P F+N +L + Sbjct: 115 EFSTDESPAFVNGLLGR 131 >gi|326801392|ref|YP_004319211.1| NusB antitermination factor [Sphingobacterium sp. 21] gi|326552156|gb|ADZ80541.1| NusB antitermination factor [Sphingobacterium sp. 21] Length = 315 Score = 51.2 bits (121), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 23/65 (35%), Positives = 38/65 (58%) Query: 89 SCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINA 148 S T+ W R+ +I ++R + EL+ S+PV+V I+EY+ I+ +F FIN Sbjct: 232 SGKTKNWEADRIALIDTLLMRMAITELLNFSSIPVKVTINEYIEISKEFSTPKSNSFING 291 Query: 149 VLDKV 153 +LDK+ Sbjct: 292 ILDKI 296 >gi|71909351|ref|YP_286938.1| NusB antitermination factor [Dechloromonas aromatica RCB] gi|119390763|sp|Q479L3|NUSB_DECAR RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|71848972|gb|AAZ48468.1| NusB antitermination factor [Dechloromonas aromatica RCB] Length = 163 Score = 51.2 bits (121), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 43/151 (28%), Positives = 69/151 (45%), Gaps = 15/151 (9%) Query: 4 QDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLH 63 QD K K + RR AR +Q LYQ + G I E Y E++ + Sbjct: 12 QDVKAPPKSARRR--AREFVLQGLYQWRVGGADEASI----EAYA----PEMEG---FAK 58 Query: 64 VDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPV 123 D E+F + GV+ +++ + +S+ + F+ L + IL G E++ P Sbjct: 59 ADREFFVGTLRGVISQQEKLIEQVSTHIDR--PFNELSPVEACILMLGSFEMLNHAETPY 116 Query: 124 EVIISEYVCIAHDFFYGDEPKFINAVLDKVS 154 VII+E + + F D K++N VLDKV+ Sbjct: 117 RVIINEAIELTKAFGGTDGHKYVNGVLDKVA 147 >gi|293607587|ref|ZP_06689921.1| conserved hypothetical protein [Achromobacter piechaudii ATCC 43553] gi|292814020|gb|EFF73167.1| conserved hypothetical protein [Achromobacter piechaudii ATCC 43553] Length = 169 Score = 51.2 bits (121), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 41/146 (28%), Positives = 67/146 (45%), Gaps = 24/146 (16%) Query: 24 VQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHI 83 +Q +Y + G T+ E + + DTE + D +WF+ ++HGV+ Sbjct: 32 LQGVYAWLLRGGEGTQDAGEIDAH--LRDTE-----DFSEADAQWFKTLLHGVLRE---- 80 Query: 84 DLLISSCLTEKWS------FSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDF 137 + L E+++ + L + IL G ELI VP +V I+E V +A F Sbjct: 81 ----APTLRERFTPYVDRPLAELSPVEHGILLIGSFELIHHVEVPYKVAINEAVELAKSF 136 Query: 138 FYGDEPKFINAVLDKVS---RKEEIK 160 D KF+N VLDK++ R E++ Sbjct: 137 GGTDGFKFVNGVLDKLAADVRANEVQ 162 >gi|318057074|ref|ZP_07975797.1| transcription antitermination protein NusB [Streptomyces sp. SA3_actG] gi|318080976|ref|ZP_07988308.1| transcription antitermination protein NusB [Streptomyces sp. SA3_actF] gi|333028359|ref|ZP_08456423.1| putative transcription antitermination protein NusB [Streptomyces sp. Tu6071] gi|332748211|gb|EGJ78652.1| putative transcription antitermination protein NusB [Streptomyces sp. Tu6071] Length = 144 Score = 51.2 bits (121), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 37/146 (25%), Positives = 69/146 (47%), Gaps = 10/146 (6%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 R AR A Q L++ D G +++++ + DT+ S Y +E ++ G Sbjct: 4 RNTARKRAFQILFEADQRGTDVLTVLADWVRHS-RGDTQQPPVSEYT---ME----LVEG 55 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135 + + ID +I+ + W R+ ++ +I+R G EL+ P V++ E V +A Sbjct: 56 YAEHARRIDEVIAKYSVD-WPLDRMPVVDRNIVRLGAHELVWVDGTPDAVVMDEAVELAK 114 Query: 136 DFFYGDEPKFINAVLDKVSR-KEEIK 160 +F D P F+N +L + K E++ Sbjct: 115 EFSTDDSPAFVNGLLGRFKNLKPELR 140 >gi|294628337|ref|ZP_06706897.1| transcription antitermination factor NusB [Streptomyces sp. e14] gi|292831670|gb|EFF90019.1| transcription antitermination factor NusB [Streptomyces sp. e14] Length = 147 Score = 51.2 bits (121), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 40/148 (27%), Positives = 67/148 (45%), Gaps = 14/148 (9%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFC-ADTELDVESVYLHVDLEWFRVIIH 74 R AR A Q L++ D G +++++ R +DT S Y ++ Sbjct: 4 RNTARKRAFQILFEGDQRGVGVLTVLADW--VRLSRSDTRQPPVSEYTMQ-------LVE 54 Query: 75 GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134 G + ID L++ W+ R+ ++ +ILR G ELI P V++ E V +A Sbjct: 55 GYAEHATRIDELLAQYAV-GWTLDRMPVVDRNILRLGAYELIWVDETPDAVVLDEMVQLA 113 Query: 135 HDFFYGDEPKFINAVLDKVSRKEEIKRS 162 +F + P F+N +L R +E+K S Sbjct: 114 KEFSTDESPSFVNGLL---GRLKELKPS 138 >gi|163858272|ref|YP_001632570.1| transcription antitermination protein NusB [Bordetella petrii DSM 12804] gi|163262000|emb|CAP44302.1| N utilization substance protein B homolog [Bordetella petrii] Length = 138 Score = 51.2 bits (121), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 35/131 (26%), Positives = 58/131 (44%), Gaps = 9/131 (6%) Query: 24 VQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHI 83 +Q +Y + G T+ E + + AD + D +WF+ ++HGV+ + Sbjct: 1 MQGVYAWLLRGGEGTQDAGEIDAHLRDADD-------FSEADAQWFKTLLHGVLQEAGGL 53 Query: 84 DLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEP 143 + + L + IL G EL+ VP +V I+E V +A F D Sbjct: 54 RERFTPYIDR--PLGELSPVEHGILLIGSYELVHHLEVPYKVAINEAVELAKSFGGTDGF 111 Query: 144 KFINAVLDKVS 154 KF+N VLDK++ Sbjct: 112 KFVNGVLDKLA 122 >gi|306836202|ref|ZP_07469186.1| N utilization substance protein B [Corynebacterium accolens ATCC 49726] gi|304567923|gb|EFM43504.1| N utilization substance protein B [Corynebacterium accolens ATCC 49726] Length = 212 Score = 51.2 bits (121), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 28/89 (31%), Positives = 47/89 (52%) Query: 67 EWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVI 126 ++ +VI+ GV + ID IS L++ W R+ + +ILR V EL+ VP Sbjct: 62 DYTKVIVQGVAEELDAIDDTISRYLSQNWELHRIPAVDRAILRLSVWELLFNPDVPTATA 121 Query: 127 ISEYVCIAHDFFYGDEPKFINAVLDKVSR 155 + E V +A + + +I+AVLD V++ Sbjct: 122 VVEGVELASQYSHDQAAPYIHAVLDDVAQ 150 >gi|308183797|ref|YP_003927930.1| transcription antitermination protein NusB [Helicobacter pylori SJM180] gi|308059717|gb|ADO01613.1| transcription antitermination protein NusB [Helicobacter pylori SJM180] Length = 138 Score = 50.8 bits (120), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 41/141 (29%), Positives = 68/141 (48%), Gaps = 13/141 (9%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 R AR A V+ LY + S E + A + L+ + + + L + + +G Sbjct: 4 RTQARGAVVELLYAFE----------SGNEGIKKIASSMLEEKKIK-NNQLAFALSLFNG 52 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135 V+++ ID LI L + W F RL + +ILR G E I +II+E + + Sbjct: 53 VLEKINEIDALIEPHLKD-WDFKRLGSMEKAILRLGAYE-IGFTPTQNPIIINECIELGK 110 Query: 136 DFFYGDEPKFINAVLDKVSRK 156 + + PKF+NA+LD +S+K Sbjct: 111 LYAEPNTPKFLNAILDSLSKK 131 >gi|302335896|ref|YP_003801103.1| NusB antitermination factor [Olsenella uli DSM 7084] gi|301319736|gb|ADK68223.1| NusB antitermination factor [Olsenella uli DSM 7084] Length = 165 Score = 50.8 bits (120), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 38/156 (24%), Positives = 71/156 (45%), Gaps = 16/156 (10%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEII-SEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74 R +AR A+Q L+Q + G S E++ +Y + D + + Sbjct: 10 RTLARSQALQLLFQAEATGRSVFEVLEGDYALTQGPLDP--------------FGESLAR 55 Query: 75 GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134 GV D + +D +I+ + WS SR+ + ++LR + E++E V + I E V +A Sbjct: 56 GVDDMRTDLDAIIA-VTSSNWSISRMPSVDRNLLRLALYEMLEVDEVATPIAIDECVELA 114 Query: 135 HDFFYGDEPKFINAVLDKVSRKEEIKRSGCVSAITQ 170 + + +F+N +L +V+ + E+ SA Q Sbjct: 115 KAYGTAESSRFVNGLLGRVAARLELGEDVISSARAQ 150 >gi|241767422|ref|ZP_04765122.1| NusB antitermination factor [Acidovorax delafieldii 2AN] gi|241361805|gb|EER58071.1| NusB antitermination factor [Acidovorax delafieldii 2AN] Length = 174 Score = 50.8 bits (120), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 39/141 (27%), Positives = 67/141 (47%), Gaps = 13/141 (9%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 R AR A+QALYQ I+G + I + D+ + D + ++HG Sbjct: 37 RSRAREFALQALYQ-HIVGGNEAAAIDAFTR---------DLAGFH-KADAAHYDAVLHG 85 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135 +D +D LI+ L K + + I + + GV E C VP V+++E + +A Sbjct: 86 CIDAAADLDALITPLLDRK--MAEISPIERATMWIGVYEFQHCLDVPWRVVLNECIELAK 143 Query: 136 DFFYGDEPKFINAVLDKVSRK 156 +F D K++NAVL+ ++ + Sbjct: 144 EFGGTDGHKYVNAVLNGLAPR 164 >gi|160902466|ref|YP_001568047.1| NusB antitermination factor [Petrotoga mobilis SJ95] gi|160360110|gb|ABX31724.1| NusB antitermination factor [Petrotoga mobilis SJ95] Length = 151 Score = 50.8 bits (120), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 38/157 (24%), Positives = 72/157 (45%), Gaps = 10/157 (6%) Query: 1 MTIQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESV 60 MT + + + + +R + +L ++L+Q+ I I+ +E A E ES Sbjct: 1 MTNKRTRMNENIPKKRMMRKLI-FESLFQLSIKDVKLDNILFTFEKLNEQAHLE---ESY 56 Query: 61 YLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHS 120 YL + I + K D LI+ +E W R+ I +++R + ELI Sbjct: 57 YLEA-----KQYIEDIYKNKNEYDALINKY-SEGWRVERIGNIEKTVMRIFIYELINKKD 110 Query: 121 VPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKE 157 +PV+VI++E + + F+N ++DK++R + Sbjct: 111 IPVKVILNESTELTKTYATQKAAAFVNGIMDKIARSQ 147 >gi|325693662|gb|EGD35581.1| N utilization substance protein B [Streptococcus sanguinis SK150] Length = 143 Score = 50.8 bits (120), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 40/145 (27%), Positives = 72/145 (49%), Gaps = 9/145 (6%) Query: 9 DLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEW 68 D+ L RRG+ R A QAL ++ G + E + + D + D ++ D+ Sbjct: 3 DILLESRRGL-RQRAFQALMSLEYEGD-----LVEACRFAYSYDKDEDADNAA-EADIPA 55 Query: 69 FRV-IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVII 127 F + ++ GV+ K +D I+ L + W+ RL ++ +ILR G+ E+ E + P V + Sbjct: 56 FLLNLVSGVVQSKDDLDKKIAQHLKKGWTVDRLTLVEKNILRLGIFEITEFDT-PQLVAV 114 Query: 128 SEYVCIAHDFFYGDEPKFINAVLDK 152 +E + ++ F KFIN +L + Sbjct: 115 NEAIELSKQFSDEKSSKFINGILSQ 139 >gi|332357987|gb|EGJ35820.1| N utilization substance protein B [Streptococcus sanguinis SK1056] Length = 143 Score = 50.8 bits (120), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 42/146 (28%), Positives = 71/146 (48%), Gaps = 11/146 (7%) Query: 9 DLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVES-VYLHVDLE 67 D+ L RRG+ R A QAL ++ G E RF + D E+ + D+ Sbjct: 3 DILLESRRGL-RQRAFQALMSLEYEGDLV-------EACRFAYSYDKDEEADKAVEADIP 54 Query: 68 WFRV-IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVI 126 F + ++ GV+ K +D I+ L + W+ RL ++ +ILR G+ E+ E + P V Sbjct: 55 AFLLNLVSGVVQSKDDLDKKIAQHLKKGWTVDRLTLVEKNILRLGIFEITEFDT-PQLVA 113 Query: 127 ISEYVCIAHDFFYGDEPKFINAVLDK 152 ++E + ++ F KFIN +L + Sbjct: 114 VNEAIELSKQFSDEKSSKFINGILSQ 139 >gi|310658653|ref|YP_003936374.1| transcription antitermination protein [Clostridium sticklandii DSM 519] gi|308825431|emb|CBH21469.1| transcription antitermination protein [Clostridium sticklandii] Length = 133 Score = 50.8 bits (120), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 40/146 (27%), Positives = 72/146 (49%), Gaps = 18/146 (12%) Query: 15 RRGIARLAAVQALYQIDIIGCSTTEIISEYETYR-FCADTELDVESVYLHVDLEWFRVII 73 +R R AAV+ Y++DI + E++ Y+ F A+ EL + + + + + Sbjct: 2 KRKELREAAVKLFYEMDI------QKTFEHKFYKNFLAENEL------VALKDNYLKEVF 49 Query: 74 HGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCI 133 + + +ID +I T W R+ + SILR + E++ +P +V I+E + + Sbjct: 50 DNFLLNRDNIDDIIQKSSTS-WDIKRIAKVDLSILRVAITEILYLSDIPDKVSINEAIDL 108 Query: 134 AHDFFYGDEP--KFINAVLDKVSRKE 157 A YGDE KF+N +L K+ + E Sbjct: 109 AKK--YGDENSYKFVNGLLGKIVKNE 132 >gi|284032250|ref|YP_003382181.1| NusB antitermination factor [Kribbella flavida DSM 17836] gi|283811543|gb|ADB33382.1| NusB antitermination factor [Kribbella flavida DSM 17836] Length = 136 Score = 50.8 bits (120), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 37/138 (26%), Positives = 65/138 (47%), Gaps = 14/138 (10%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 R AR A+ LY+ ++ G +++ AD + V E+ ++ G Sbjct: 4 RSKARKRALDVLYESEVRGLPVGGTLADR-----VADNDPPVN--------EFTVALVEG 50 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135 V + ID L+S+ + W+ R+ + ++LR GV EL+ VP V +SE V +A Sbjct: 51 VAEHIAAIDDLLSTH-SVGWTLDRMPAVDRNVLRIGVYELLFDEQVPDVVAVSEAVALAR 109 Query: 136 DFFYGDEPKFINAVLDKV 153 D + P F+N +L ++ Sbjct: 110 DLSTDESPAFVNGLLARL 127 >gi|300909746|ref|ZP_07127207.1| transcription antitermination factor NusB [Lactobacillus reuteri SD2112] gi|300893611|gb|EFK86970.1| transcription antitermination factor NusB [Lactobacillus reuteri SD2112] Length = 141 Score = 50.8 bits (120), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 32/117 (27%), Positives = 54/117 (46%), Gaps = 7/117 (5%) Query: 47 YRFCADTELDVESVY---LHVD----LEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSR 99 + +D E D+++VY H D + +++GV + + +D I+ L W+ +R Sbjct: 20 FALQSDPEADIQTVYEAIPHHDEKQIPPYLLTLVNGVREHQDQLDEQINDLLASGWTINR 79 Query: 100 LDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRK 156 L ILR + E+ +VP V I+E + + F KFIN L K R+ Sbjct: 80 LAKPDLVILRLALFEIQYAENVPTVVAINEALELTKTFSSDKSRKFINGALGKFERQ 136 >gi|324990231|gb|EGC22169.1| N utilization substance protein B [Streptococcus sanguinis SK353] gi|325688019|gb|EGD30038.1| N utilization substance protein B [Streptococcus sanguinis SK72] Length = 143 Score = 50.8 bits (120), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 43/150 (28%), Positives = 72/150 (48%), Gaps = 19/150 (12%) Query: 9 DLKLSHRRGIARLAAVQAL----YQIDII-GCSTTEIISEYETYRFCADTELDVESVYLH 63 D+ L RRG+ R A QAL Y+ D++ C Y + D E D + Sbjct: 3 DILLESRRGL-RQRAFQALMSLEYEGDLVEACRFA--------YSYDKDEETDKAA---E 50 Query: 64 VDLEWFRV-IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVP 122 D+ F + ++ GV+ K +D I+ L + W+ RL ++ +ILR G+ E+ E + P Sbjct: 51 ADIPAFLLNLVSGVVQSKDDLDKKIAQHLKKGWTVDRLTLVEKNILRLGIFEITEFDT-P 109 Query: 123 VEVIISEYVCIAHDFFYGDEPKFINAVLDK 152 V ++E + ++ F KFIN +L + Sbjct: 110 QLVAVNEAIELSKQFSDEKSSKFINGILSQ 139 >gi|322412645|gb|EFY03553.1| transcription antitermination protein NusB [Streptococcus dysgalactiae subsp. dysgalactiae ATCC 27957] Length = 149 Score = 50.8 bits (120), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 42/154 (27%), Positives = 74/154 (48%), Gaps = 21/154 (13%) Query: 2 TIQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVY 61 + Q++++DL R A QAL+ +++ G +F D + V+ Sbjct: 4 SFQNSRRDL---------RERAFQALFSMEMGGDFLV-------ASQFAYDYDKVVDEGN 47 Query: 62 LHVDLEWFRV-IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHS 120 ++L F + +++GV D K+ +D IS L WS RL + ++LR G+ E+ + Sbjct: 48 EALELPIFLLNLVNGVNDHKEELDRTISEHLKTGWSLERLTVTDKTLLRLGLFEIKYFNE 107 Query: 121 VPVEVIISEYVCIAHDFFYGDE--PKFINAVLDK 152 P V ++E + +A Y DE KFIN +L + Sbjct: 108 TPDRVALNEIIEVAKK--YSDETSAKFINGLLSQ 139 >gi|182417973|ref|ZP_02949281.1| transcription antitermination factor NusB [Clostridium butyricum 5521] gi|237668086|ref|ZP_04528070.1| transcription antitermination factor NusB [Clostridium butyricum E4 str. BoNT E BL5262] gi|182378144|gb|EDT75679.1| transcription antitermination factor NusB [Clostridium butyricum 5521] gi|237656434|gb|EEP53990.1| transcription antitermination factor NusB [Clostridium butyricum E4 str. BoNT E BL5262] Length = 131 Score = 50.8 bits (120), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 41/141 (29%), Positives = 68/141 (48%), Gaps = 14/141 (9%) Query: 15 RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74 R ++R A++ + + CS + ET F + E D++ +DL + + + Sbjct: 2 NRKLSREKAMELFFGM---TCSKDTVEEAVET--FIDNYEGDIK----ELDLTYIKKALI 52 Query: 75 GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134 G+ + K+ ID ISS L + W R+ + +ILR E++ VP V I+E + I Sbjct: 53 GIENNKEAIDEAISSNL-QNWKIDRISKVNLTILRLAAYEILFDEEVPRSVAINEALEIT 111 Query: 135 HDFFYGDEPK--FINAVLDKV 153 Y DE F+N VLDK+ Sbjct: 112 RK--YSDEKSVSFVNGVLDKI 130 >gi|330685971|gb|EGG97594.1| transcription antitermination factor NusB [Staphylococcus epidermidis VCU121] Length = 128 Score = 50.8 bits (120), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 41/139 (29%), Positives = 63/139 (45%), Gaps = 13/139 (9%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 R +R+ A Q L+Q++I T E F D Y +D ++ ++ G Sbjct: 3 RKESRVQAFQTLFQLEIKDTDLTI----KEAINFIKDD-------YPDLDFDFINWLVTG 51 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135 V D + +D I L + WS RL ILR E++ + P +V+I+E V +A Sbjct: 52 VKDHEPVLDEKIKPYLKD-WSLERLLKTDRIILRMATFEILHSDT-PAKVVINEAVELAK 109 Query: 136 DFFYGDEPKFINAVLDKVS 154 F D KFIN VL ++ Sbjct: 110 QFSDDDHYKFINGVLSNIN 128 >gi|323127989|gb|ADX25286.1| transcription antitermination protein NusB [Streptococcus dysgalactiae subsp. equisimilis ATCC 12394] Length = 149 Score = 50.8 bits (120), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 42/154 (27%), Positives = 74/154 (48%), Gaps = 21/154 (13%) Query: 2 TIQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVY 61 + Q++++DL R A QAL+ +++ G +F D + V+ Sbjct: 4 SFQNSRRDL---------RERAFQALFSMEMGGDFLV-------ASQFAYDYDKVVDEGN 47 Query: 62 LHVDLEWFRV-IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHS 120 ++L F + +++GV D K+ +D IS L WS RL + ++LR G+ E+ + Sbjct: 48 EALELPIFLLNLVNGVNDHKKELDRTISEHLKTGWSLERLTVTDKTLLRLGLFEIKYFNE 107 Query: 121 VPVEVIISEYVCIAHDFFYGDE--PKFINAVLDK 152 P V ++E + +A Y DE KFIN +L + Sbjct: 108 TPDRVALNEIIEVAKK--YSDETSAKFINGLLSQ 139 >gi|258620990|ref|ZP_05716024.1| N utilization substance protein B [Vibrio mimicus VM573] gi|261211383|ref|ZP_05925671.1| transcription termination protein NusB [Vibrio sp. RC341] gi|262170766|ref|ZP_06038444.1| transcription termination protein NusB [Vibrio mimicus MB-451] gi|262404600|ref|ZP_06081155.1| transcription termination protein NusB [Vibrio sp. RC586] gi|258586378|gb|EEW11093.1| N utilization substance protein B [Vibrio mimicus VM573] gi|260839338|gb|EEX65964.1| transcription termination protein NusB [Vibrio sp. RC341] gi|261891842|gb|EEY37828.1| transcription termination protein NusB [Vibrio mimicus MB-451] gi|262349632|gb|EEY98770.1| transcription termination protein NusB [Vibrio sp. RC586] Length = 156 Score = 50.8 bits (120), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 43/153 (28%), Positives = 72/153 (47%), Gaps = 16/153 (10%) Query: 10 LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVES--------VY 61 +K + RR AR A+QA+Y I T E ++ E +F + D E Sbjct: 5 VKPAARRN-ARQFALQAIYSWQI----TKENVATIEE-QFLTSGKYDEEEHRAAEPALAA 58 Query: 62 LHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSV 121 D+ +FR ++ GV+ +D + ++ LDM+ ++LR + E+ V Sbjct: 59 PETDVSYFRDLLAGVVLNHTELDSKLRPFVSR--PMQDLDMMELALLRLAMYEMTRREDV 116 Query: 122 PVEVIISEYVCIAHDFFYGDEPKFINAVLDKVS 154 P +V+I+E + +A F D KF+N VLDK + Sbjct: 117 PYKVVINEAIELAKVFAAEDSHKFVNGVLDKAA 149 >gi|255325060|ref|ZP_05366166.1| transcription antitermination protein NusB [Corynebacterium tuberculostearicum SK141] gi|255297625|gb|EET76936.1| transcription antitermination protein NusB [Corynebacterium tuberculostearicum SK141] Length = 221 Score = 50.8 bits (120), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 30/89 (33%), Positives = 45/89 (50%) Query: 67 EWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVI 126 E+ +VI+ GV + ID IS L E W R+ + +ILR V EL+ +P Sbjct: 62 EYTQVIVKGVAEELDAIDDTISRFLAEDWELHRIPAVDRAILRLSVWELLFNPDIPTATA 121 Query: 127 ISEYVCIAHDFFYGDEPKFINAVLDKVSR 155 + E V IA + +I+AVLD V++ Sbjct: 122 VVEGVEIASQYSNDQAAPYIHAVLDDVAQ 150 >gi|221633595|ref|YP_002522821.1| transcription antitermination factor NusB [Thermomicrobium roseum DSM 5159] gi|221156287|gb|ACM05414.1| transcription antitermination factor NusB [Thermomicrobium roseum DSM 5159] Length = 168 Score = 50.8 bits (120), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 40/153 (26%), Positives = 73/153 (47%), Gaps = 14/153 (9%) Query: 4 QDNKK--DLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVY 61 + N+K D+ L+ R AR+ A+Q LY++D+ S E++ E +R A V Sbjct: 20 RGNQKELDMSLARIRRQARILALQILYEVDVANHSLEEVL---ERHRSQASIAQPVR--- 73 Query: 62 LHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSV 121 + ++ GV ++ ID +I+ + +L + +ILR + EL+ V Sbjct: 74 -----RYAERLVTGVWADRERIDRMIAEA-APAFPVDQLPPVDRNILRIAIYELLHEPDV 127 Query: 122 PVEVIISEYVCIAHDFFYGDEPKFINAVLDKVS 154 P++ I+E V IA + +F+N VL ++ Sbjct: 128 PLKAAINEAVEIAKQYGGESSSRFVNGVLGTIA 160 >gi|15644635|ref|NP_206803.1| transcription antitermination protein NusB [Helicobacter pylori 26695] gi|7387970|sp|O24853|NUSB_HELPY RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|2313078|gb|AAD07074.1| predicted coding region HP0001 [Helicobacter pylori 26695] Length = 138 Score = 50.8 bits (120), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 41/141 (29%), Positives = 68/141 (48%), Gaps = 13/141 (9%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 R AR A V+ LY + S E + A + L+ + + + L + + +G Sbjct: 4 RTQARGAVVELLYAFE----------SGNEEIKKIASSMLEEKKIK-NNQLAFALSLFNG 52 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135 V+++ ID LI L + W F RL + +ILR G E I +II+E + + Sbjct: 53 VLEKINEIDALIEPHLKD-WDFKRLGSMEKAILRLGAYE-IGFTPTQNPIIINECIELGK 110 Query: 136 DFFYGDEPKFINAVLDKVSRK 156 + + PKF+NA+LD +S+K Sbjct: 111 LYAEPNTPKFLNAILDSLSKK 131 >gi|325923217|ref|ZP_08184896.1| transcription antitermination factor NusB [Xanthomonas gardneri ATCC 19865] gi|325546299|gb|EGD17474.1| transcription antitermination factor NusB [Xanthomonas gardneri ATCC 19865] Length = 131 Score = 50.8 bits (120), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 38/144 (26%), Positives = 63/144 (43%), Gaps = 16/144 (11%) Query: 24 VQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHI 83 +QA+Y I G ++IS++ E + DL +F ++ GV+ + + Sbjct: 1 MQAVYAWQISGGFAKQVISQFAH-----------EQAHEVADLAYFESLVEGVLTNRAEL 49 Query: 84 DLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEP 143 D ++ L +D I ++LR EL+ VP V+I+E + A F Sbjct: 50 DTALTPYLDR--GVEEVDAIERAVLRLAAYELLYRQDVPYRVVINEAIETAKRFGSEHGH 107 Query: 144 KFINAVLDKVS---RKEEIKRSGC 164 ++N VLD+ S RK E SG Sbjct: 108 TYVNGVLDRASVEWRKVESGASGA 131 >gi|302874807|ref|YP_003843440.1| NusB antitermination factor [Clostridium cellulovorans 743B] gi|307690576|ref|ZP_07633022.1| transcription antitermination protein NusB [Clostridium cellulovorans 743B] gi|302577664|gb|ADL51676.1| NusB antitermination factor [Clostridium cellulovorans 743B] Length = 134 Score = 50.8 bits (120), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 27/90 (30%), Positives = 46/90 (51%), Gaps = 1/90 (1%) Query: 64 VDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPV 123 VD + I+ G+ + K + + L+S L W +R+ + +IL + E+ +P Sbjct: 45 VDFTFVETILSGISENKSNYEELVSQNLI-GWKLNRISKLNLAILLVAIYEIKNIDDIPK 103 Query: 124 EVIISEYVCIAHDFFYGDEPKFINAVLDKV 153 V I+E V IA + P FIN++LDK+ Sbjct: 104 AVSINEAVEIAKKYSDDKAPNFINSILDKI 133 >gi|327469227|gb|EGF14699.1| N utilization substance protein B [Streptococcus sanguinis SK330] gi|332363805|gb|EGJ41584.1| N utilization substance protein B [Streptococcus sanguinis SK355] Length = 143 Score = 50.8 bits (120), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 43/150 (28%), Positives = 72/150 (48%), Gaps = 19/150 (12%) Query: 9 DLKLSHRRGIARLAAVQAL----YQIDII-GCSTTEIISEYETYRFCADTELDVESVYLH 63 D+ L RRG+ R A QAL Y+ D++ C Y + D E D + Sbjct: 3 DILLESRRGL-RQRAFQALMSLEYEGDLVEACRFA--------YSYDKDEEADKAA---E 50 Query: 64 VDLEWFRV-IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVP 122 D+ F + ++ GV+ K +D I+ L + W+ RL ++ +ILR G+ E+ E + P Sbjct: 51 ADIPAFLLNLVSGVVQSKDDLDKKIAQHLKKGWTVDRLTLVEKNILRLGIFEITEFDT-P 109 Query: 123 VEVIISEYVCIAHDFFYGDEPKFINAVLDK 152 V ++E + ++ F KFIN +L + Sbjct: 110 QLVAVNEAIELSKQFSDEKSSKFINGILSQ 139 >gi|290474696|ref|YP_003467576.1| transcription termination; L factor [Xenorhabdus bovienii SS-2004] gi|289174009|emb|CBJ80796.1| transcription termination; L factor [Xenorhabdus bovienii SS-2004] Length = 138 Score = 50.8 bits (120), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 42/139 (30%), Positives = 68/139 (48%), Gaps = 13/139 (9%) Query: 23 AVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQH 82 AVQA+Y + + I++ E ++F +E DV V D+ +FR ++ GV Sbjct: 13 AVQAIYSWQL----SKNDIADVE-FQFL--SEQDVTGV----DITYFRELLTGVAVNAAK 61 Query: 83 IDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDE 142 +D L++ L+ + L + +ILR + EL VP +V I+E + +A F D Sbjct: 62 LDALMAPYLSRQ--LEELGQVEKAILRVAMFELSFRDDVPYKVAINEGIELAKTFGAEDS 119 Query: 143 PKFINAVLDKVSRKEEIKR 161 KF+N VLDK K+ Sbjct: 120 HKFVNGVLDKAGPAARKKK 138 >gi|288574984|ref|ZP_06393341.1| NusB antitermination factor [Dethiosulfovibrio peptidovorans DSM 11002] gi|288570725|gb|EFC92282.1| NusB antitermination factor [Dethiosulfovibrio peptidovorans DSM 11002] Length = 143 Score = 50.8 bits (120), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 41/137 (29%), Positives = 64/137 (46%), Gaps = 13/137 (9%) Query: 19 ARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMD 78 AR A+Q LY +D+ T + +E F + E+DVE+ R ++ GVMD Sbjct: 13 AREVALQLLYSMDV----TKKHDAEKALNDFSFEDEIDVET--------GVRALVLGVMD 60 Query: 79 RKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFF 138 ID LI+ + W R+ + + +R V E + VPV V ISE V + F Sbjct: 61 HLGEIDNLINVNVV-GWRGDRMVAVDRAAIRLAVYEGLIARVVPVPVAISEAVELVKVFG 119 Query: 139 YGDEPKFINAVLDKVSR 155 + +F+N L ++ R Sbjct: 120 TDESGRFVNGALARIVR 136 >gi|311739520|ref|ZP_07713355.1| N utilization substance protein B [Corynebacterium pseudogenitalium ATCC 33035] gi|311305336|gb|EFQ81404.1| N utilization substance protein B [Corynebacterium pseudogenitalium ATCC 33035] Length = 221 Score = 50.8 bits (120), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 30/89 (33%), Positives = 45/89 (50%) Query: 67 EWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVI 126 E+ +VI+ GV + ID IS L E W R+ + +ILR V EL+ +P Sbjct: 62 EYTQVIVKGVAEELDAIDDTISRFLAEDWELHRIPAVDRAILRLSVWELLFNPDIPTATA 121 Query: 127 ISEYVCIAHDFFYGDEPKFINAVLDKVSR 155 + E V IA + +I+AVLD V++ Sbjct: 122 VVEGVEIASQYSNDQAAPYIHAVLDDVAQ 150 >gi|117923480|ref|YP_864097.1| NusB antitermination factor [Magnetococcus sp. MC-1] gi|117607236|gb|ABK42691.1| NusB antitermination factor [Magnetococcus sp. MC-1] Length = 165 Score = 50.8 bits (120), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 27/91 (29%), Positives = 50/91 (54%), Gaps = 1/91 (1%) Query: 64 VDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPV 123 +D ++F + GV ++ +D I WS R ++ +ILR G+ EL++ VP Sbjct: 57 MDQDYFSQLTLGVEAEREVLDSWIGRA-GAAWSMDRFSVVDHNILRLGIYELLKQPEVPH 115 Query: 124 EVIISEYVCIAHDFFYGDEPKFINAVLDKVS 154 VI++E + ++ F + +F+N V+DKV+ Sbjct: 116 RVILNEAIELSKRFGGEESSRFVNGVMDKVA 146 >gi|330815784|ref|YP_004359489.1| NusB antitermination factor [Burkholderia gladioli BSR3] gi|327368177|gb|AEA59533.1| NusB antitermination factor [Burkholderia gladioli BSR3] Length = 144 Score = 50.8 bits (120), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 42/147 (28%), Positives = 63/147 (42%), Gaps = 14/147 (9%) Query: 10 LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF 69 +K S RR +R A Q LYQ + ST EI D +L Y D E Sbjct: 1 MKKSARRQ-SRELATQGLYQWLLSNASTGEI-----------DAQLRGAQGYEKADRELL 48 Query: 70 RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISE 129 I++GV+ ++H DL +L + ++L EL P V+I+E Sbjct: 49 ETIVYGVV--REHADLAAILAPNLDRPIEQLSPVERAVLLMATFELKHQIETPYRVVINE 106 Query: 130 YVCIAHDFFYGDEPKFINAVLDKVSRK 156 + + F D K++N VLDK++ K Sbjct: 107 AIELTKTFGGSDGHKYVNGVLDKLALK 133 >gi|227503547|ref|ZP_03933596.1| transcription antitermination protein NusB [Corynebacterium accolens ATCC 49725] gi|227075583|gb|EEI13546.1| transcription antitermination protein NusB [Corynebacterium accolens ATCC 49725] Length = 211 Score = 50.8 bits (120), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 28/89 (31%), Positives = 47/89 (52%) Query: 67 EWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVI 126 ++ +VI+ GV + ID IS L++ W R+ + +ILR V EL+ VP Sbjct: 62 DYTKVIVQGVAEELDAIDDTISRYLSQNWELHRIPAVDRAILRLSVWELLFNPDVPTATA 121 Query: 127 ISEYVCIAHDFFYGDEPKFINAVLDKVSR 155 + E V +A + + +I+AVLD V++ Sbjct: 122 VVEGVELASQYSHDQAAPYIHAVLDDVAQ 150 >gi|188526813|ref|YP_001909500.1| transcription antitermination protein NusB [Helicobacter pylori Shi470] gi|217033802|ref|ZP_03439227.1| hypothetical protein HP9810_877g6 [Helicobacter pylori 98-10] gi|254778739|ref|YP_003056844.1| transcription antitermination protein NusB [Helicobacter pylori B38] gi|238691960|sp|B2UW05|NUSB_HELPS RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|188143053|gb|ACD47470.1| transcription antitermination protein NusB [Helicobacter pylori Shi470] gi|216943700|gb|EEC23143.1| hypothetical protein HP9810_877g6 [Helicobacter pylori 98-10] gi|254000650|emb|CAX28559.1| N utilization substance protein B homolog (Protein nusB), transcriptional antitermination factor [Helicobacter pylori B38] gi|261837458|gb|ACX97224.1| N utilization substance protein B/transcriptional antitermination factor [Helicobacter pylori 51] gi|297379224|gb|ADI34111.1| transcription antitermination factor NusB [Helicobacter pylori v225d] gi|308061306|gb|ADO03194.1| transcription antitermination protein NusB [Helicobacter pylori Cuz20] gi|308062871|gb|ADO04758.1| transcription antitermination protein NusB [Helicobacter pylori Sat464] gi|315585992|gb|ADU40373.1| transcription antitermination factor NusB [Helicobacter pylori 35A] gi|317008681|gb|ADU79261.1| transcription antitermination protein NusB [Helicobacter pylori India7] gi|317178310|dbj|BAJ56098.1| transcription antitermination protein NusB [Helicobacter pylori F30] gi|317181291|dbj|BAJ59075.1| transcription antitermination protein NusB [Helicobacter pylori F57] gi|332672789|gb|AEE69606.1| transcription antitermination factor NusB [Helicobacter pylori 83] Length = 138 Score = 50.8 bits (120), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 41/141 (29%), Positives = 68/141 (48%), Gaps = 13/141 (9%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 R AR A V+ LY + S E + A + L+ + + + L + + +G Sbjct: 4 RTQARGAVVELLYAFE----------SGNEEIKKIASSMLEEKKIK-NNQLAFALSLFNG 52 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135 V+++ ID LI L + W F RL + +ILR G E I +II+E + + Sbjct: 53 VLEKINEIDALIEPHLKD-WDFKRLGSMEKAILRLGAYE-IGFTPTQNPIIINECIELGK 110 Query: 136 DFFYGDEPKFINAVLDKVSRK 156 + + PKF+NA+LD +S+K Sbjct: 111 LYAEPNTPKFLNAILDSLSKK 131 >gi|329938937|ref|ZP_08288311.1| Transcription termination protein NusB [Streptomyces griseoaurantiacus M045] gi|329301822|gb|EGG45715.1| Transcription termination protein NusB [Streptomyces griseoaurantiacus M045] Length = 142 Score = 50.8 bits (120), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 34/148 (22%), Positives = 66/148 (44%), Gaps = 10/148 (6%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 R AR A Q L++ D G +++++ + + V + ++ G Sbjct: 4 RNTARKRAFQILFEGDQRGADVLTVLADWVSLSRSDTRQPPVSEYTMQ--------LVEG 55 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135 + ID L++ W+ R+ ++ +ILR G ELI P V++ E V +A Sbjct: 56 YAEHVTRIDELLAQYAV-GWTLDRMPVVDRNILRLGAYELIWVDETPDAVVLDEMVQLAK 114 Query: 136 DFFYGDEPKFINAVLDKVSR-KEEIKRS 162 +F + P F+N +L ++ K ++R+ Sbjct: 115 EFSTDESPGFVNGLLGRLKELKPSLRRA 142 >gi|325690389|gb|EGD32393.1| N utilization substance protein B [Streptococcus sanguinis SK115] Length = 143 Score = 50.8 bits (120), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 42/149 (28%), Positives = 71/149 (47%), Gaps = 17/149 (11%) Query: 9 DLKLSHRRGIARLAAVQAL----YQIDII-GCSTTEIISEYETYRFCADTELDVESVYLH 63 D+ L RRG+ R A QAL Y+ D++ C + E C E D+ + L+ Sbjct: 3 DILLESRRGL-RQRAFQALMSLEYEGDLVEACRFAYSYDKDEEA--CKAAEADIPAFLLN 59 Query: 64 VDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPV 123 ++ GV+ K +D I+ L + W+ RL ++ +ILR G+ E+ E + P Sbjct: 60 --------LVSGVVQSKDDLDKKIAQHLKKGWTVDRLTLVEKNILRLGIFEITEFDT-PQ 110 Query: 124 EVIISEYVCIAHDFFYGDEPKFINAVLDK 152 V ++E + ++ F KFIN +L + Sbjct: 111 LVAVNEAIELSKQFSDEKSSKFINGILSQ 139 >gi|238026450|ref|YP_002910681.1| transcription antitermination protein NusB [Burkholderia glumae BGR1] gi|237875644|gb|ACR27977.1| NusB antitermination factor [Burkholderia glumae BGR1] Length = 145 Score = 50.8 bits (120), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 44/149 (29%), Positives = 67/149 (44%), Gaps = 18/149 (12%) Query: 10 LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF 69 +K S RR +R A Q LYQ + ST EI D +L Y D E Sbjct: 1 MKKSARRQ-SRELATQGLYQWLLSNASTGEI-----------DAQLRGAQGYDKADRELL 48 Query: 70 RVIIHGVMDRKQHIDL--LISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVII 127 I++GV+ ++H DL +++ CL +L + ++L EL P V+I Sbjct: 49 ETILYGVI--REHADLAAVLTPCLDR--PLEQLSPVERAVLLIATFELKHQIETPYRVVI 104 Query: 128 SEYVCIAHDFFYGDEPKFINAVLDKVSRK 156 +E V + F D K++N V DK++ K Sbjct: 105 NEAVELTKTFGGSDGYKYVNGVADKLALK 133 >gi|227544393|ref|ZP_03974442.1| transcription antitermination protein NusB [Lactobacillus reuteri CF48-3A] gi|227185656|gb|EEI65727.1| transcription antitermination protein NusB [Lactobacillus reuteri CF48-3A] Length = 138 Score = 50.8 bits (120), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 32/117 (27%), Positives = 54/117 (46%), Gaps = 7/117 (5%) Query: 47 YRFCADTELDVESVY---LHVD----LEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSR 99 + +D E D+++VY H D + +++GV + + +D I+ L W+ +R Sbjct: 17 FALQSDPEADIQTVYEAIPHHDEKQIPPYLLTLVNGVREHQDQLDEQINDLLASGWTINR 76 Query: 100 LDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRK 156 L ILR + E+ +VP V I+E + + F KFIN L K R+ Sbjct: 77 LAKPDLVILRLALFEIQYAENVPTVVAINEALELTKTFSSDKSRKFINGALGKFERQ 133 >gi|15611072|ref|NP_222723.1| transcription antitermination protein NusB [Helicobacter pylori J99] gi|7387981|sp|Q9ZN57|NUSB_HELPJ RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|4154504|gb|AAD05585.1| TRANSCRIPTION TERMINATION [Helicobacter pylori J99] Length = 138 Score = 50.8 bits (120), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 41/141 (29%), Positives = 68/141 (48%), Gaps = 13/141 (9%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 R AR A V+ LY + S E + A + L+ + + + L + + +G Sbjct: 4 RTQARGAVVELLYAFE----------SGNEEIKKIASSMLEEKKIK-NNQLAFALSLFNG 52 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135 V+++ ID LI L + W F RL + +ILR G E I +II+E + + Sbjct: 53 VLEKINEIDALIEPHLKD-WDFKRLGSMEKAILRLGAYE-IGFTPTQNPIIINECIELGK 110 Query: 136 DFFYGDEPKFINAVLDKVSRK 156 + + PKF+NA+LD +S+K Sbjct: 111 LYAEPNTPKFLNAILDSLSKK 131 >gi|117928511|ref|YP_873062.1| NusB antitermination factor [Acidothermus cellulolyticus 11B] gi|166215656|sp|A0LUG6|NUSB_ACIC1 RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|117648974|gb|ABK53076.1| NusB antitermination factor [Acidothermus cellulolyticus 11B] Length = 145 Score = 50.8 bits (120), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 39/138 (28%), Positives = 64/138 (46%), Gaps = 14/138 (10%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 R AR A+ L++ D+ EI++++ T R ADT + +V L + G Sbjct: 4 RTKARKRALDVLFEADLRAADPLEILADH-TAR--ADTPVPEYAVRL----------VEG 50 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135 V + ID +I W+ R+ + +ILR + EL+ VP V+++E V +A Sbjct: 51 VAAHRAEIDRIIEQ-FAVGWTLQRMPTVDRNILRLAIYELLWVTEVPDAVVLAEAVKLAQ 109 Query: 136 DFFYGDEPKFINAVLDKV 153 D + F+N VL V Sbjct: 110 DLSTAESAPFVNGVLAAV 127 >gi|90961508|ref|YP_535424.1| transcription antitermination protein NusB [Lactobacillus salivarius UCC118] gi|227890595|ref|ZP_04008400.1| transcription antitermination protein NusB [Lactobacillus salivarius ATCC 11741] gi|119390778|sp|Q1WUJ4|NUSB_LACS1 RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|90820702|gb|ABD99341.1| N utilization substance protein B [Lactobacillus salivarius UCC118] gi|227867533|gb|EEJ74954.1| transcription antitermination protein NusB [Lactobacillus salivarius ATCC 11741] Length = 131 Score = 50.8 bits (120), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 27/86 (31%), Positives = 47/86 (54%), Gaps = 1/86 (1%) Query: 65 DLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVE 124 DL + ++ GV+D + ID+ I+ L + W+ RL+ ILR + E I+ V + Sbjct: 43 DLSYLNELVDGVLDHQSEIDMEITKYLRKNWNIGRLNKTDLIILRIAIFE-IKYSDVASK 101 Query: 125 VIISEYVCIAHDFFYGDEPKFINAVL 150 + ++E V +A +F KF+NA+L Sbjct: 102 IAVNEAVELAKEFSDDKSYKFVNAIL 127 >gi|301300970|ref|ZP_07207135.1| transcription antitermination factor NusB [Lactobacillus salivarius ACS-116-V-Col5a] gi|300851437|gb|EFK79156.1| transcription antitermination factor NusB [Lactobacillus salivarius ACS-116-V-Col5a] Length = 131 Score = 50.8 bits (120), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 27/86 (31%), Positives = 47/86 (54%), Gaps = 1/86 (1%) Query: 65 DLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVE 124 DL + ++ GV+D + ID+ I+ L + W+ RL+ ILR + E I+ V + Sbjct: 43 DLSYLNELVDGVLDHQSEIDMEITKYLRKNWNIGRLNKTDLIILRIAIFE-IKYSDVASK 101 Query: 125 VIISEYVCIAHDFFYGDEPKFINAVL 150 + ++E V +A +F KF+NA+L Sbjct: 102 IAVNEAVELAKEFSDDKSYKFVNAIL 127 >gi|260772216|ref|ZP_05881132.1| transcription termination protein NusB [Vibrio metschnikovii CIP 69.14] gi|260611355|gb|EEX36558.1| transcription termination protein NusB [Vibrio metschnikovii CIP 69.14] Length = 156 Score = 50.8 bits (120), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 41/152 (26%), Positives = 70/152 (46%), Gaps = 14/152 (9%) Query: 10 LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEY-------ETYRFCADTELDVESVYL 62 +K + RR AR A+QA+Y I + I ++ E A+ L Sbjct: 5 VKPAARRN-ARQFALQAIYSWQITKENVATIEEQFLSGGKYDEEEHHAAEPALSAP---- 59 Query: 63 HVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVP 122 D+ +FR ++ GV+ +D + ++ LDM+ ++LR + E+ VP Sbjct: 60 QTDVTYFRDLLVGVVLNHTELDSKLRPFVSR--PMQDLDMMELALLRLAMYEMTRREDVP 117 Query: 123 VEVIISEYVCIAHDFFYGDEPKFINAVLDKVS 154 +V+I+E + +A F D KF+N VLDK + Sbjct: 118 YKVVINEAIELAKVFAAEDSHKFVNGVLDKAA 149 >gi|304312173|ref|YP_003811771.1| N utilization substance protein B, transcription termination factor [gamma proteobacterium HdN1] gi|301797906|emb|CBL46128.1| N utilization substance protein B, transcription termination factor [gamma proteobacterium HdN1] Length = 136 Score = 50.4 bits (119), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 29/93 (31%), Positives = 50/93 (53%), Gaps = 2/93 (2%) Query: 64 VDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPV 123 D+ +F ++HGV +D IS L + + LD + +ILR EL++ +P Sbjct: 22 TDVAYFHELLHGVPSCVADLDSAISPFLDRE--ITELDQVERAILRLATYELLKRQDIPY 79 Query: 124 EVIISEYVCIAHDFFYGDEPKFINAVLDKVSRK 156 V I+E + +A F + K++N VLDKV+++ Sbjct: 80 RVAINEGIELAKTFGATESHKYVNGVLDKVAQR 112 >gi|229168926|ref|ZP_04296643.1| N utilization substance protein B [Bacillus cereus AH621] gi|228614518|gb|EEK71626.1| N utilization substance protein B [Bacillus cereus AH621] Length = 114 Score = 50.4 bits (119), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 29/87 (33%), Positives = 45/87 (51%), Gaps = 1/87 (1%) Query: 67 EWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVI 126 E+ ++ G +D K+ ID I L +KW R+ ++ SILR V E+ +P V Sbjct: 25 EFLESLVVGFVDNKEEIDAAIRQNL-KKWKLERISIVDRSILRVAVCEMKYMEEIPHNVT 83 Query: 127 ISEYVCIAHDFFYGDEPKFINAVLDKV 153 I+E + IA F + +FIN VL + Sbjct: 84 INEAIEIAKTFGDEESRRFINGVLSNI 110 >gi|166030414|ref|ZP_02233243.1| hypothetical protein DORFOR_00075 [Dorea formicigenerans ATCC 27755] gi|166029772|gb|EDR48529.1| hypothetical protein DORFOR_00075 [Dorea formicigenerans ATCC 27755] Length = 132 Score = 50.4 bits (119), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 35/118 (29%), Positives = 59/118 (50%), Gaps = 10/118 (8%) Query: 46 TYRFCADTELDVE-SVYLHV--------DLEWFRVIIHGVMDRKQHIDLLISSCLTEKWS 96 +Y F +D E+ + +Y D+ + R V+ + + ID +++ +T W Sbjct: 16 SYEFNSDQEMPQQMQLYFEQLDQEPKEEDMAYIRDKALNVILKSEEIDEMLNEHVT-GWK 74 Query: 97 FSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVS 154 SR++ + SILR V E+ VPV V I+E V +A + + P FIN VL ++S Sbjct: 75 TSRMNKVDLSILRLAVYEMKYDEDVPVGVAINEAVELAKKYSGDEGPAFINGVLARLS 132 >gi|149008214|ref|ZP_01831709.1| transcription antitermination protein NusB [Streptococcus pneumoniae SP18-BS74] gi|307126646|ref|YP_003878677.1| transcription antitermination factor NusB [Streptococcus pneumoniae 670-6B] gi|147760358|gb|EDK67339.1| transcription antitermination protein NusB [Streptococcus pneumoniae SP18-BS74] gi|306483708|gb|ADM90577.1| transcription antitermination factor NusB [Streptococcus pneumoniae 670-6B] gi|332076876|gb|EGI87338.1| transcription antitermination factor NusB [Streptococcus pneumoniae GA17545] Length = 140 Score = 50.4 bits (119), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 30/99 (30%), Positives = 51/99 (51%), Gaps = 2/99 (2%) Query: 61 YLHVDLEWFRV-IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECH 119 Y V L F + ++ GV +K+ +D I+ L W+ RL ++ ++LR GV E I Sbjct: 43 YTDVQLPAFLIDLVSGVQAKKEELDKQITQHLKAGWTIERLTLVERNLLRLGVFE-ITSF 101 Query: 120 SVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEE 158 P V ++E + +A DF +FIN +L + +E+ Sbjct: 102 DTPQLVAVNEAIELAKDFSDQKSARFINGLLSQFVTEEQ 140 >gi|109897640|ref|YP_660895.1| NusB antitermination factor [Pseudoalteromonas atlantica T6c] gi|119390797|sp|Q15W97|NUSB_PSEA6 RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|109699921|gb|ABG39841.1| NusB antitermination factor [Pseudoalteromonas atlantica T6c] Length = 140 Score = 50.4 bits (119), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 44/143 (30%), Positives = 64/143 (44%), Gaps = 14/143 (9%) Query: 10 LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF 69 +K + RR AR AVQA+Y + +I T D VD E+F Sbjct: 1 MKPAARRK-ARELAVQAVYSWQMSKNPLDQIELSIVTSNNMQD-----------VDTEYF 48 Query: 70 RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISE 129 ++ V+ R +D I L LD + +ILR EL+E VP +V+I+E Sbjct: 49 LELLRAVVRRTAELDAKIKPYLGR--LPEELDPVENAILRLATYELVERIDVPYKVVINE 106 Query: 130 YVCIAHDFFYGDEPKFINAVLDK 152 + +A F + KF+N VLDK Sbjct: 107 AIELAKSFGAEESHKFVNGVLDK 129 >gi|125973352|ref|YP_001037262.1| NusB antitermination factor [Clostridium thermocellum ATCC 27405] gi|256005458|ref|ZP_05430421.1| NusB antitermination factor [Clostridium thermocellum DSM 2360] gi|281417552|ref|ZP_06248572.1| NusB antitermination factor [Clostridium thermocellum JW20] gi|166215686|sp|A3DDP0|NUSB_CLOTH RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|125713577|gb|ABN52069.1| NusB antitermination factor [Clostridium thermocellum ATCC 27405] gi|255990598|gb|EEU00717.1| NusB antitermination factor [Clostridium thermocellum DSM 2360] gi|281408954|gb|EFB39212.1| NusB antitermination factor [Clostridium thermocellum JW20] gi|316940416|gb|ADU74450.1| NusB antitermination factor [Clostridium thermocellum DSM 1313] Length = 145 Score = 50.4 bits (119), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 37/139 (26%), Positives = 64/139 (46%), Gaps = 14/139 (10%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISE-YETYRFCADTELDVESVYLHVDLEWFRVIIH 74 R +R A++ +YQ++I S E I+ E Y + D E+ ++ Sbjct: 3 RRASREIAMKLIYQLEIQKDSREEQINNTLEQYDLNEN------------DREYILDVVK 50 Query: 75 GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134 GV ++ ID I ++ W SR+ + +ILR + E+ +P V I+E V +A Sbjct: 51 GVFKNQEEIDGTIEK-FSKGWKLSRISKVDLAILRLAIYEMCHRDDIPFTVAINEAVELA 109 Query: 135 HDFFYGDEPKFINAVLDKV 153 ++ + FIN +L KV Sbjct: 110 KNYSGEESGSFINGILGKV 128 >gi|257463858|ref|ZP_05628244.1| transcription antitermination protein NusB [Fusobacterium sp. D12] gi|317061389|ref|ZP_07925874.1| N utilization substance protein B [Fusobacterium sp. D12] gi|313687065|gb|EFS23900.1| N utilization substance protein B [Fusobacterium sp. D12] Length = 138 Score = 50.4 bits (119), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 47/145 (32%), Positives = 77/145 (53%), Gaps = 17/145 (11%) Query: 11 KLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFR 70 K++ R AR + ++Q +I G S E EY + R E++ + V + LE +R Sbjct: 4 KMTRRE--AREELFKWIFQTEIQGNSM-EKAFEYSSLR----EEIEKDEV-TKLFLERYR 55 Query: 71 VIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEY 130 G+ + ++ I+ I + +T+ W FSR+ + S+L+ V E+ +PVE+I++E Sbjct: 56 ---KGLAEHREEIETKIQAAMTD-WDFSRIGYVEKSLLKLAVYEMY-FEDLPVEIIVNEA 110 Query: 131 VCIAHDFFYGD--EPKFINAVLDKV 153 V IA YGD +FIN VL KV Sbjct: 111 VEIAK--IYGDVKTHEFINGVLAKV 133 >gi|320540317|ref|ZP_08039969.1| transcription antitermination protein [Serratia symbiotica str. Tucson] gi|320029637|gb|EFW11664.1| transcription antitermination protein [Serratia symbiotica str. Tucson] Length = 138 Score = 50.4 bits (119), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 40/132 (30%), Positives = 62/132 (46%), Gaps = 13/132 (9%) Query: 23 AVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQH 82 AVQALY + ++ ++F TE DV V D+ +FR + GV Sbjct: 13 AVQALYSWQLSKNDIADV-----EHQFL--TEQDVNGV----DIAYFRELFSGVAVNAGM 61 Query: 83 IDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDE 142 +D L+ L+ + L + ++LR + EL VP +V I+E + +A F D Sbjct: 62 LDTLMVPYLSRQ--LDELGQVERAVLRIALFELKMREDVPYKVAINEAIELAKTFGAEDS 119 Query: 143 PKFINAVLDKVS 154 KF+N VLDK + Sbjct: 120 HKFVNGVLDKAA 131 >gi|253990956|ref|YP_003042312.1| transcription antitermination protein NusB [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|253782406|emb|CAQ85570.1| N utilization substance protein B [Photorhabdus asymbiotica] Length = 139 Score = 50.4 bits (119), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 39/130 (30%), Positives = 63/130 (48%), Gaps = 13/130 (10%) Query: 23 AVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQH 82 AVQA+Y + G ++ ++ + E DV V D+ +FR ++ GV Sbjct: 13 AVQAIYSWQLSGNDIADVELQFLS-------EQDVTGV----DVTYFRELLSGVAVNAVK 61 Query: 83 IDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDE 142 +D L++ L+ + L + +ILR + EL VP +V I+E + +A F D Sbjct: 62 LDALMAPYLSRQ--LEELGQVEKAILRVAMFELSYRDDVPYKVAINEAIELAKVFGAEDS 119 Query: 143 PKFINAVLDK 152 KF+N VLDK Sbjct: 120 HKFVNGVLDK 129 >gi|209694495|ref|YP_002262423.1| transcription antitermination protein NusB [Aliivibrio salmonicida LFI1238] gi|238055348|sp|B6EIA0|NUSB_ALISL RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|208008446|emb|CAQ78611.1| N utilization substance protein B (protein NusB) [Aliivibrio salmonicida LFI1238] Length = 155 Score = 50.4 bits (119), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 41/148 (27%), Positives = 69/148 (46%), Gaps = 6/148 (4%) Query: 10 LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHV---DL 66 +K + RR AR A+QA+Y I + I ++ T + E + L D+ Sbjct: 5 VKPAARRN-ARQFALQAIYSWQISKENVAAIEEQFLTADKYDEEEHHAKEPKLQAPETDV 63 Query: 67 EWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVI 126 +FR + GV +D + L+ LD + ++LR + E++ VP +V+ Sbjct: 64 AYFRDLFSGVALNHIKLDGKMRPYLSR--PLQDLDQMELALLRMSIYEMMNRDDVPYKVV 121 Query: 127 ISEYVCIAHDFFYGDEPKFINAVLDKVS 154 I+E + +A F D KF+N VLDK + Sbjct: 122 INEAIELAKVFAAEDSHKFVNGVLDKAA 149 >gi|301156187|emb|CBW15658.1| transcription antitermination protein [Haemophilus parainfluenzae T3T1] Length = 145 Score = 50.4 bits (119), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 46/144 (31%), Positives = 66/144 (45%), Gaps = 14/144 (9%) Query: 11 KLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFR 70 K+S RR AR AVQALY + G + ++ F D +L VD +F Sbjct: 10 KVSPRRR-ARECAVQALYSWALSGNAPEQV-----ELTFVVDQDLK------GVDKPYFS 57 Query: 71 VIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEY 130 + + +D +S L + LD I +ILR V EL VP +V I+E Sbjct: 58 RLFRQTVANVDSVDFSMSHYLDR--TLDELDPIEKAILRLAVYELQFEPDVPYKVAINEA 115 Query: 131 VCIAHDFFYGDEPKFINAVLDKVS 154 + +A F + K+IN VLDKV+ Sbjct: 116 IEVAKVFGADESHKYINGVLDKVA 139 >gi|257875394|ref|ZP_05655047.1| antitermination protein NusB [Enterococcus casseliflavus EC20] gi|257809560|gb|EEV38380.1| antitermination protein NusB [Enterococcus casseliflavus EC20] Length = 154 Score = 50.4 bits (119), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 29/91 (31%), Positives = 48/91 (52%) Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131 ++ GV K+ +D +I S L W RL + +ILR + E+I +VP V ++E + Sbjct: 60 LVAGVCHYKEALDEVIQSHLKSGWKIQRLSKMDVTILRIALYEMIYVDNVPNRVALNEAI 119 Query: 132 CIAHDFFYGDEPKFINAVLDKVSRKEEIKRS 162 +A F KF+N +L V+++ E K S Sbjct: 120 ELAKTFSDDQSRKFVNGILSTVNQELETKAS 150 >gi|107022034|ref|YP_620361.1| transcription antitermination protein NusB [Burkholderia cenocepacia AU 1054] gi|116688978|ref|YP_834601.1| transcription antitermination protein NusB [Burkholderia cenocepacia HI2424] gi|170732269|ref|YP_001764216.1| transcription antitermination protein NusB [Burkholderia cenocepacia MC0-3] gi|206561400|ref|YP_002232165.1| transcription antitermination protein NusB [Burkholderia cenocepacia J2315] gi|254246083|ref|ZP_04939404.1| Transcription termination factor [Burkholderia cenocepacia PC184] gi|119372281|sp|Q1BYB7|NUSB_BURCA RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|166215666|sp|A0K5D1|NUSB_BURCH RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|238688594|sp|B1JX75|NUSB_BURCC RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|238693104|sp|B4EBT9|NUSB_BURCJ RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|105892223|gb|ABF75388.1| NusB antitermination factor [Burkholderia cenocepacia AU 1054] gi|116647067|gb|ABK07708.1| NusB antitermination factor [Burkholderia cenocepacia HI2424] gi|124870859|gb|EAY62575.1| Transcription termination factor [Burkholderia cenocepacia PC184] gi|169815511|gb|ACA90094.1| NusB antitermination factor [Burkholderia cenocepacia MC0-3] gi|198037442|emb|CAR53377.1| probable N utilization substance protein B [Burkholderia cenocepacia J2315] Length = 145 Score = 50.4 bits (119), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 43/147 (29%), Positives = 65/147 (44%), Gaps = 14/147 (9%) Query: 10 LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF 69 +K S RR +R A Q LYQ + + EI D +L Y D E Sbjct: 1 MKKSARR-QSRELATQGLYQWLLSNAPSGEI-----------DAQLRGALGYDKADKELL 48 Query: 70 RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISE 129 I+HGV+ ++H L+ + + +L + ++L EL P VII+E Sbjct: 49 EAILHGVI--REHATLVEALAPSLDRPIDQLSPVERAVLLIATFELTHHVETPYRVIINE 106 Query: 130 YVCIAHDFFYGDEPKFINAVLDKVSRK 156 V +A F D K++N VLDK++ K Sbjct: 107 AVELAKTFGGSDGYKYVNGVLDKLAAK 133 >gi|15902434|ref|NP_357984.1| transcription antitermination protein NusB [Streptococcus pneumoniae R6] gi|183603887|ref|ZP_02722699.2| transcription antitermination factor NusB [Streptococcus pneumoniae MLV-016] gi|15457952|gb|AAK99194.1| Transcription termination protein [Streptococcus pneumoniae R6] gi|183577498|gb|EDT98026.1| transcription antitermination factor NusB [Streptococcus pneumoniae MLV-016] Length = 146 Score = 50.4 bits (119), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 34/117 (29%), Positives = 55/117 (47%), Gaps = 8/117 (6%) Query: 49 FCADTELDVESVYLH------VDLEWFRV-IIHGVMDRKQHIDLLISSCLTEKWSFSRLD 101 F D E Y H V L F + ++ GV +K+ +D I+ L W+ RL Sbjct: 31 FGTDVETACRFAYTHDREDTDVQLPAFLIDLVSGVQAKKEELDKQITQHLKAGWTIERLT 90 Query: 102 MILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEE 158 ++ ++LR GV E I P V ++E + +A DF +FIN +L + +E+ Sbjct: 91 LVERNLLRLGVFE-ITSFDTPQLVAVNEAIELAKDFSDQKSARFINGLLSQFVTEEQ 146 >gi|328945778|gb|EGG39929.1| N utilization substance protein B [Streptococcus sanguinis SK1087] Length = 143 Score = 50.4 bits (119), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 42/146 (28%), Positives = 71/146 (48%), Gaps = 11/146 (7%) Query: 9 DLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYL-HVDLE 67 D+ L RRG+ R A QAL ++ G E RF + D E+ + D+ Sbjct: 3 DILLESRRGL-RQRAFQALMSLEYEGDLV-------EACRFAYSYDKDEEADKVAEADIP 54 Query: 68 WFRV-IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVI 126 F + ++ GV+ K +D I+ L + W+ RL ++ +ILR G+ E+ E + P V Sbjct: 55 AFLLNLVSGVVQSKDDLDKKIAQHLKKGWTVDRLTLVEKNILRLGIFEITEFDT-PQLVA 113 Query: 127 ISEYVCIAHDFFYGDEPKFINAVLDK 152 ++E + ++ F KFIN +L + Sbjct: 114 VNEAIELSKQFSDEKSSKFINGILSQ 139 >gi|260903826|ref|ZP_05912148.1| NusB antitermination factor [Brevibacterium linens BL2] Length = 121 Score = 50.4 bits (119), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 25/82 (30%), Positives = 44/82 (53%), Gaps = 1/82 (1%) Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131 I+ G+ ++ ID +I++ E W+ R+ + ++L+ G E+I VP + I E V Sbjct: 33 IVEGITSHREEIDEIIATY-AEGWTLERMPAVDLALLQIGTWEIIFNDEVPDKAAIDEAV 91 Query: 132 CIAHDFFYGDEPKFINAVLDKV 153 +A F D P FI+ +L +V Sbjct: 92 SLARQFSTDDSPGFISGLLSRV 113 >gi|157369317|ref|YP_001477306.1| transcription antitermination protein NusB [Serratia proteamaculans 568] gi|166918812|sp|A8GAN8|NUSB_SERP5 RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|157321081|gb|ABV40178.1| NusB antitermination factor [Serratia proteamaculans 568] Length = 138 Score = 50.4 bits (119), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 40/132 (30%), Positives = 66/132 (50%), Gaps = 13/132 (9%) Query: 23 AVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQH 82 AVQALY + ++ ++F +E DV+ V D+ +FR ++ GV Sbjct: 13 AVQALYSWQLSKNDIADV-----EHQFL--SEQDVKDV----DIVYFRELLSGVAVNAGL 61 Query: 83 IDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDE 142 +D L++ L+ + L + ++LR + EL VP +V I+E + +A F D Sbjct: 62 LDSLMAPVLSRQ--LEELGQVERAVLRIALYELKMREDVPYKVAINEAIELAKTFGAEDS 119 Query: 143 PKFINAVLDKVS 154 KF+N VLDKV+ Sbjct: 120 HKFVNGVLDKVA 131 >gi|42522647|ref|NP_968027.1| transcription termination factor nusB [Bdellovibrio bacteriovorus HD100] gi|81617954|sp|Q6MNX9|NUSB_BDEBA RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|39575179|emb|CAE79020.1| transcription termination factor nusB [Bdellovibrio bacteriovorus HD100] Length = 135 Score = 50.4 bits (119), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 46/149 (30%), Positives = 70/149 (46%), Gaps = 19/149 (12%) Query: 10 LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISE--YETYRFCADTELDVESVYLHVDLE 67 +KL+ RR AR A+Q L+Q TE + Y+T+ + LD E V + DL Sbjct: 1 MKLTARRQ-ARELALQVLFQ--------TEFAPQISYQTFLEVFEQSLDPE-VITYADL- 49 Query: 68 WFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLEL-IECHSVPVEVI 126 I+ GV K+ ID I + + W R+ I +ILR V E+ + + Sbjct: 50 ----IVTGVKSNKEAIDSKIQAS-SAHWKVERMATIDRNILRIAVYEMRFAADPIKENIA 104 Query: 127 ISEYVCIAHDFFYGDEPKFINAVLDKVSR 155 I+E V IA + D F+N +LD+V + Sbjct: 105 INEAVEIAKKYGTSDSGSFVNGLLDQVGK 133 >gi|218781155|ref|YP_002432473.1| NusB antitermination factor [Desulfatibacillum alkenivorans AK-01] gi|226738896|sp|B8FJ78|NUSB_DESAA RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|218762539|gb|ACL05005.1| NusB antitermination factor [Desulfatibacillum alkenivorans AK-01] Length = 143 Score = 50.4 bits (119), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 36/140 (25%), Positives = 62/140 (44%), Gaps = 14/140 (10%) Query: 15 RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDL-EWFRVII 73 +R AR A+Q+L+ +D E + FC ++ DL ++F + Sbjct: 3 KRRRARELALQSLFYVDSTSAPPLEALD-----LFC-------QNFPPPKDLAQFFYELA 50 Query: 74 HGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCI 133 GV++ + ID LI + W R+ + +++R E + C VP V I+E + I Sbjct: 51 KGVINNQDEIDRLIEQH-SNNWKLYRMSAVDLNLMRIAAYEFLFCPDVPRRVSINEAIDI 109 Query: 134 AHDFFYGDEPKFINAVLDKV 153 F + FIN +LD + Sbjct: 110 GKRFGTAESGAFINGILDSI 129 >gi|33151658|ref|NP_873011.1| transcription antitermination protein NusB [Haemophilus ducreyi 35000HP] gi|39931811|sp|Q7VNQ2|NUSB_HAEDU RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|33147879|gb|AAP95400.1| transcription termination factor [Haemophilus ducreyi 35000HP] Length = 137 Score = 50.4 bits (119), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 48/145 (33%), Positives = 69/145 (47%), Gaps = 14/145 (9%) Query: 10 LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF 69 +K+S RR AR AVQALY I S E+ F D ++ VDL +F Sbjct: 1 MKVSPRRR-ARECAVQALYSWYISQNSIEEV-----ELAFVTDQDMK------GVDLPYF 48 Query: 70 RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISE 129 R ++ G + ID I L + +D I +ILR EL VP +V+I+E Sbjct: 49 RKLLRGTALYVEAIDHDIRPYLDRMEN--DVDPIERTILRLATYELKYELDVPYKVVINE 106 Query: 130 YVCIAHDFFYGDEPKFINAVLDKVS 154 + +A F D K+IN +LDK++ Sbjct: 107 GIEVAKVFGSDDSHKYINGILDKLA 131 >gi|254518730|ref|ZP_05130786.1| NusB antitermination factor [Clostridium sp. 7_2_43FAA] gi|226912479|gb|EEH97680.1| NusB antitermination factor [Clostridium sp. 7_2_43FAA] Length = 134 Score = 50.4 bits (119), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 42/140 (30%), Positives = 69/140 (49%), Gaps = 14/140 (10%) Query: 15 RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74 R +R A++ L+ + + + E I ET F D E++++++ DLE+ + I+ Sbjct: 2 NRKRSREIAMELLFGMTLSKNTLEETI---ET--FIEDYEMNLKTI----DLEYIKGILA 52 Query: 75 GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134 V + ID I LT W R+ + SILR + E++ VP +V I+E + + Sbjct: 53 KVEENITVIDQKIEEALT-NWKIDRVSKVNISILRLAIAEMLYVEDVPEKVAINEAIELT 111 Query: 135 HDFFYGDEPK--FINAVLDK 152 Y DE F+N VLDK Sbjct: 112 KK--YSDEKSVSFVNGVLDK 129 >gi|94676751|ref|YP_589030.1| transcription antitermination protein NusB [Baumannia cicadellinicola str. Hc (Homalodisca coagulata)] gi|119372277|sp|Q1LSN4|NUSB_BAUCH RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|94219901|gb|ABF14060.1| transcription antitermination factor NusB [Baumannia cicadellinicola str. Hc (Homalodisca coagulata)] Length = 139 Score = 50.4 bits (119), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 42/145 (28%), Positives = 71/145 (48%), Gaps = 14/145 (9%) Query: 10 LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF 69 +K++ RR AR AVQALY + + +I ++ F A E D++ + D+ +F Sbjct: 1 MKITARRR-ARECAVQALYSWQLSNNNIADIEAQ-----FLA--EQDIKGI----DVAYF 48 Query: 70 RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISE 129 R + G +D L+ L+ +L + ++LR + EL + +P V I+E Sbjct: 49 RELYSGTAIAADMLDQLMVPYLSR--PLDKLGHVERAVLRLALYELSKRQDIPYRVAINE 106 Query: 130 YVCIAHDFFYGDEPKFINAVLDKVS 154 + +A F D KFIN VL+K + Sbjct: 107 AIELAKTFGAEDSYKFINGVLEKTA 131 >gi|322373691|ref|ZP_08048227.1| transcription antitermination factor NusB [Streptococcus sp. C150] gi|321278733|gb|EFX55802.1| transcription antitermination factor NusB [Streptococcus sp. C150] Length = 144 Score = 50.4 bits (119), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 46/157 (29%), Positives = 72/157 (45%), Gaps = 30/157 (19%) Query: 3 IQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISE-YETYRF----CADTELDV 57 +D+++DL R A Q L+ ++ G E++ + + Y F +TE+DV Sbjct: 5 FKDSRRDL---------RERAFQTLFALEFGG----EVLEQAHFAYTFDKPIGEETEVDV 51 Query: 58 ESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIE 117 + L ++ GV + +D I L E WS SRL + ++LR G+ E+ Sbjct: 52 PAFLLS--------LVTGVREELAQLDSQIEEKLKEGWSLSRLIVTDRTLLRLGLYEITS 103 Query: 118 CHSVPVEVIISEYVCIAHDFFYGDE--PKFINAVLDK 152 P V I+E + IA Y DE KFIN VL + Sbjct: 104 FEETPGRVAINEIIEIAKK--YSDETSAKFINGVLSQ 138 >gi|15675648|ref|NP_269822.1| transcription antitermination protein NusB [Streptococcus pyogenes M1 GAS] gi|22095965|sp|Q99Y88|NUSB_STRP1 RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|13622860|gb|AAK34543.1| putative transcriptional terminator [Streptococcus pyogenes M1 GAS] Length = 150 Score = 50.4 bits (119), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 41/154 (26%), Positives = 76/154 (49%), Gaps = 21/154 (13%) Query: 2 TIQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYE-TYRFCADTELDVESV 60 + Q++++DL R A QAL+ I++ E+++ + Y + T D + + Sbjct: 4 SFQNSRRDL---------RERAFQALFNIEM----GAELLAASQFAYGYDKVTGEDAQVL 50 Query: 61 YLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHS 120 L + + ++ GV + K+ +D LIS+ L + WS RL + ++LR G+ E+ Sbjct: 51 ELPI---FLLSLVTGVNNHKEELDNLISTHLKKGWSLERLTLTDKTLLRLGLFEIKYFDK 107 Query: 121 VPVEVIISEYVCIAHDFFYGDE--PKFINAVLDK 152 P V ++E + + Y DE KFIN +L + Sbjct: 108 TPDRVALNEIIEVVKK--YSDETSAKFINGLLSQ 139 >gi|302517963|ref|ZP_07270305.1| transcription antitermination factor NusB [Streptomyces sp. SPB78] gi|302426858|gb|EFK98673.1| transcription antitermination factor NusB [Streptomyces sp. SPB78] Length = 144 Score = 50.4 bits (119), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 37/146 (25%), Positives = 69/146 (47%), Gaps = 10/146 (6%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 R AR A Q L++ D G +++++ + DT+ S Y +E ++ G Sbjct: 4 RNTARKRAFQILFEADQRGTDVLTVLADWVRHSRN-DTQQPPVSEYT---ME----LVEG 55 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135 + + ID +I+ + W R+ ++ +I+R G EL+ P V++ E V +A Sbjct: 56 YAEHARRIDEVIAKYSVD-WPLDRMPVVDRNIVRLGAHELVWVDGTPDAVVMDEAVELAK 114 Query: 136 DFFYGDEPKFINAVLDKVSR-KEEIK 160 +F D P F+N +L + K E++ Sbjct: 115 EFSTDDSPAFVNGLLGRFKNLKPELR 140 >gi|225854005|ref|YP_002735517.1| transcription antitermination protein NusB [Streptococcus pneumoniae JJA] gi|254772660|sp|C1CCJ6|NUSB_STRZJ RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|225724174|gb|ACO20027.1| transcription antitermination factor NusB [Streptococcus pneumoniae JJA] Length = 140 Score = 50.4 bits (119), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 34/117 (29%), Positives = 55/117 (47%), Gaps = 8/117 (6%) Query: 49 FCADTELDVESVYLH------VDLEWFRV-IIHGVMDRKQHIDLLISSCLTEKWSFSRLD 101 F D E Y H V L F + ++ GV +K+ +D I+ L W+ RL Sbjct: 25 FGTDVETACRFAYTHDREDTAVQLPAFLIDLVSGVQAKKEELDKQITQHLKAGWTIERLT 84 Query: 102 MILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEE 158 ++ ++LR GV E I P V ++E + +A DF +FIN +L + +E+ Sbjct: 85 LVERNLLRLGVFE-ITSFDTPQLVAVNEAIELAKDFSDQKSARFINGLLSQFVTEEQ 140 >gi|159897280|ref|YP_001543527.1| NusB antitermination factor [Herpetosiphon aurantiacus ATCC 23779] gi|254772643|sp|A9AXI5|NUSB_HERA2 RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|159890319|gb|ABX03399.1| NusB antitermination factor [Herpetosiphon aurantiacus ATCC 23779] Length = 146 Score = 50.4 bits (119), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 39/150 (26%), Positives = 68/150 (45%), Gaps = 18/150 (12%) Query: 12 LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71 L HR R AA+QAL+++D +++ R D E ++F Sbjct: 9 LRHR---VRAAALQALFELDQTTHDLDSVVA-----RISDDEMFSAEG------RDFFAR 54 Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELI---ECHSVPVEVIIS 128 I++G +Q ID LI+ + W ++ + ++LR + E++ PV+ +I+ Sbjct: 55 IVNGAWVNRQEIDDLIAK-IAPSWPVHQMPGVDIAVLRIALFEILYDAAADKAPVKAVIN 113 Query: 129 EYVCIAHDFFYGDEPKFINAVLDKVSRKEE 158 E V +A F + +F+N VL V K E Sbjct: 114 EAVELAKHFGSDNSGRFVNGVLSTVVNKPE 143 >gi|332977564|gb|EGK14334.1| N utilization substance protein B [Desmospora sp. 8437] Length = 148 Score = 50.4 bits (119), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 41/155 (26%), Positives = 68/155 (43%), Gaps = 20/155 (12%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDL-----EWFR 70 R R A+Q LYQ +I AD + E+ LH + +F Sbjct: 3 RRTVREKALQTLYQNEINPDG--------------ADRSMKKEARSLHDEAGEEASAFFL 48 Query: 71 VIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEY 130 ++ V+ +D +I L + W+ SRL + SILR V EL+ +P ++E Sbjct: 49 RLVRTVIRNMPRLDPVIQGYLKQDWTLSRLSPVDRSILRMAVCELLYEEEIPEGASLNEA 108 Query: 131 VCIAHDFFYGDEPKFINAVLDKVSRK-EEIKRSGC 164 V +A F + +FIN VL + + +E+++S Sbjct: 109 VELAKTFSTEESARFINGVLGSMVKNLDEVRKSAV 143 >gi|320160865|ref|YP_004174089.1| antitermination protein NusB [Anaerolinea thermophila UNI-1] gi|319994718|dbj|BAJ63489.1| antitermination protein NusB [Anaerolinea thermophila UNI-1] Length = 155 Score = 50.4 bits (119), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 41/148 (27%), Positives = 71/148 (47%), Gaps = 15/148 (10%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF-RVIIH 74 R AR A++ALY+ID+ +++ E ++ L +L F R I+ Sbjct: 4 RTRARAVALEALYEIDLTNHLPGDVLEER------------IKDAKLQDELADFAREIVM 51 Query: 75 GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134 GV+ +D+ I+ E W ++ +I +ILR + E PV+V I+E V +A Sbjct: 52 GVLPITHQLDVQIAKHAPE-WPLDQVAVIDRNILRIALWEFAVGQCTPVKVAINEAVELA 110 Query: 135 HDFFYGDEPKFINAVLDKVS-RKEEIKR 161 + +F+N VL ++ R+ EIK+ Sbjct: 111 KKYGSDSSARFVNGVLGSLADRETEIKQ 138 >gi|71892016|ref|YP_277746.1| transcription antitermination protein NusB [Candidatus Blochmannia pennsylvanicus str. BPEN] gi|119372278|sp|Q493G9|NUSB_BLOPB RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|71796122|gb|AAZ40873.1| L factor [Candidatus Blochmannia pennsylvanicus str. BPEN] Length = 144 Score = 50.4 bits (119), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 42/145 (28%), Positives = 72/145 (49%), Gaps = 15/145 (10%) Query: 12 LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71 +S RR AR +QALY + + + E E Y TE D++ ++ +F Sbjct: 4 ISRRR--ARECTLQALYSWQV----SKNDVKEIERYVV---TEQDIQDC----NISYFHE 50 Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131 + GV+ + +D L+ L+ + +L I S+LR + EL +C+ +P +V I+E + Sbjct: 51 LYIGVISCAEELDKLMIPHLSR--NLEKLGYIEHSVLRIALFELTKCNDIPYKVAINEAI 108 Query: 132 CIAHDFFYGDEPKFINAVLDKVSRK 156 + F KFIN VLDK++ + Sbjct: 109 ELVKIFGAEKSHKFINGVLDKIANQ 133 >gi|89895110|ref|YP_518597.1| hypothetical protein DSY2364 [Desulfitobacterium hafniense Y51] gi|219669523|ref|YP_002459958.1| NusB antitermination factor [Desulfitobacterium hafniense DCB-2] gi|119390768|sp|Q24UY9|NUSB_DESHY RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|254772633|sp|B8FQ61|NUSB_DESHD RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|89334558|dbj|BAE84153.1| hypothetical protein [Desulfitobacterium hafniense Y51] gi|219539783|gb|ACL21522.1| NusB antitermination factor [Desulfitobacterium hafniense DCB-2] Length = 148 Score = 50.4 bits (119), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 37/138 (26%), Positives = 68/138 (49%), Gaps = 10/138 (7%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 R +AR A+Q L+Q+++ G S + +++ + + S+ +L G Sbjct: 3 RRLARETALQVLFQLEMTGESQD---LKSAIHKWADEFAVPEGSIPFAEEL------AEG 53 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135 + K+ ID + L+E WS +R+ + ++LR E++ +P V I+E + IA Sbjct: 54 TLTHKEVIDENLEK-LSEGWSLARMANVDRNLLRLASYEILFRKDIPGRVTINEAIEIAK 112 Query: 136 DFFYGDEPKFINAVLDKV 153 + + KFIN +LDKV Sbjct: 113 RYGSEESGKFINGILDKV 130 >gi|325963392|ref|YP_004241298.1| transcription antitermination factor NusB [Arthrobacter phenanthrenivorans Sphe3] gi|323469479|gb|ADX73164.1| transcription antitermination factor NusB [Arthrobacter phenanthrenivorans Sphe3] Length = 136 Score = 50.4 bits (119), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 27/84 (32%), Positives = 45/84 (53%), Gaps = 1/84 (1%) Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131 II GV+ ++ ID + + ++ WS R+ + ILR G EL+ VP V +SE V Sbjct: 47 IIEGVVSQQTAIDEFLETY-SQGWSLERMPSVDRIILRIGTWELLYNDDVPDGVAVSEAV 105 Query: 132 CIAHDFFYGDEPKFINAVLDKVSR 155 +A + P+FIN +L ++ + Sbjct: 106 ALAKTLSTDESPQFINGLLGRLQQ 129 >gi|309789561|ref|ZP_07684142.1| NusB antitermination factor [Oscillochloris trichoides DG6] gi|308228297|gb|EFO81944.1| NusB antitermination factor [Oscillochloris trichoides DG6] Length = 150 Score = 50.4 bits (119), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 41/147 (27%), Positives = 68/147 (46%), Gaps = 17/147 (11%) Query: 12 LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71 L HR R+AA+Q L+++D + I YE R D EL E + Sbjct: 4 LRHR---VRIAALQVLFEVD---ATDHPIDVVYE--RRLVDEELPAEGE------RFLNQ 49 Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELI--ECHSVPVEVIISE 129 I+ G + + ++D +I W +++ + +ILR + EL+ E PV+ +I+E Sbjct: 50 IVFGSWEHRSYLDGVIEEA-APNWPVTQMPGVDKAILRIAIFELLIDEVEQTPVKAVINE 108 Query: 130 YVCIAHDFFYGDEPKFINAVLDKVSRK 156 V +A F + +FIN VL V + Sbjct: 109 AVELAKHFGSDNSSRFINGVLGTVVNR 135 >gi|260767831|ref|ZP_05876766.1| transcription termination protein NusB [Vibrio furnissii CIP 102972] gi|260617340|gb|EEX42524.1| transcription termination protein NusB [Vibrio furnissii CIP 102972] gi|315179339|gb|ADT86253.1| N utilization substance protein B [Vibrio furnissii NCTC 11218] Length = 156 Score = 50.4 bits (119), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 40/148 (27%), Positives = 70/148 (47%), Gaps = 6/148 (4%) Query: 10 LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYL---HVDL 66 +K + RR AR A+QA+Y I + I ++ + + E L D+ Sbjct: 5 VKPAARRN-ARQFALQAIYSWQITKDNVATIEEQFLSGGKYDEEEHHASEPALAAPETDV 63 Query: 67 EWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVI 126 +FR ++ GV+ +D + ++ LDM+ ++LR + E+ VP +V+ Sbjct: 64 AYFRDLLAGVVLNHTELDSKLRPFVSR--PMQDLDMMELALLRLAMYEMTRREDVPYKVV 121 Query: 127 ISEYVCIAHDFFYGDEPKFINAVLDKVS 154 I+E + +A F D KF+N VLDK + Sbjct: 122 INEAIELAKVFAAEDSHKFVNGVLDKAA 149 >gi|239637666|ref|ZP_04678638.1| transcription antitermination factor NusB [Staphylococcus warneri L37603] gi|239596884|gb|EEQ79409.1| transcription antitermination factor NusB [Staphylococcus warneri L37603] Length = 128 Score = 50.1 bits (118), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 41/139 (29%), Positives = 63/139 (45%), Gaps = 13/139 (9%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 R +R+ A Q L+Q++I T E F D Y +D ++ ++ G Sbjct: 3 RKESRVQAFQTLFQLEIKDTDLTI----KEAINFIKDD-------YPDLDFDFINWLVTG 51 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135 V D + +D I L + WS RL ILR E++ + P +V+I+E V +A Sbjct: 52 VKDHEPVLDEKIKPYLKD-WSLERLLKTDRIILRMATFEILHSDT-PSKVVINEAVELAK 109 Query: 136 DFFYGDEPKFINAVLDKVS 154 F D KFIN VL ++ Sbjct: 110 QFSDDDHYKFINGVLSNIN 128 >gi|317010284|gb|ADU84031.1| transcription antitermination protein NusB [Helicobacter pylori SouthAfrica7] Length = 138 Score = 50.1 bits (118), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 40/141 (28%), Positives = 68/141 (48%), Gaps = 13/141 (9%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 R AR A ++ LY + S E + A + L+ + + + L + + +G Sbjct: 4 RTQARGAVIELLYAFE----------SGNEEIKKIAPSMLEEKKIK-NNQLAFALSLFNG 52 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135 V+++ ID LI L + W F RL + +ILR G E I +II+E + + Sbjct: 53 VLEKINEIDALIEPHLKD-WDFKRLGSMEKAILRLGAYE-IGFTPTQNPIIINECIELGK 110 Query: 136 DFFYGDEPKFINAVLDKVSRK 156 + + PKF+NA+LD +S+K Sbjct: 111 LYAEPNTPKFLNAILDSLSKK 131 >gi|109946871|ref|YP_664099.1| transcription antitermination protein NusB [Helicobacter acinonychis str. Sheeba] gi|122973428|sp|Q17Z26|NUSB_HELAH RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|109714092|emb|CAJ99100.1| transcription termination protein [Helicobacter acinonychis str. Sheeba] Length = 138 Score = 50.1 bits (118), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 40/141 (28%), Positives = 68/141 (48%), Gaps = 13/141 (9%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 R AR A ++ LY + S E + A + L+ + + + L + + +G Sbjct: 4 RTQARGAVIELLYAFE----------SGNEEIKKIAPSMLEEKKIK-NNQLAFALSLFNG 52 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135 V+++ ID LI L + W F RL + +ILR G E I +II+E + + Sbjct: 53 VLEKINEIDALIEPHLKD-WDFKRLGSMEKAILRLGAYE-IGFTPTQNPIIINECIELGK 110 Query: 136 DFFYGDEPKFINAVLDKVSRK 156 + + PKF+NA+LD +S+K Sbjct: 111 LYAEPNTPKFLNAILDSLSKK 131 >gi|261838874|gb|ACX98639.1| transcription antitermination protein NusB [Helicobacter pylori 52] Length = 138 Score = 50.1 bits (118), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 29/85 (34%), Positives = 47/85 (55%), Gaps = 2/85 (2%) Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131 + +GV+++ ID LI L + W F RL + +ILR G E I +II+E + Sbjct: 49 LFNGVLEKINEIDALIEPHLKD-WDFKRLGSMEKAILRLGAYE-IGFTPTQNPIIINECI 106 Query: 132 CIAHDFFYGDEPKFINAVLDKVSRK 156 + + + PKF+NA+LD +S+K Sbjct: 107 ELGKLYAEPNTPKFLNAILDSLSKK 131 >gi|15900351|ref|NP_344955.1| transcription antitermination protein NusB [Streptococcus pneumoniae TIGR4] gi|111657914|ref|ZP_01408625.1| hypothetical protein SpneT_02000923 [Streptococcus pneumoniae TIGR4] gi|116516227|ref|YP_815903.1| transcription antitermination protein NusB [Streptococcus pneumoniae D39] gi|148983827|ref|ZP_01817146.1| transcription antitermination factor NusB [Streptococcus pneumoniae SP3-BS71] gi|148988184|ref|ZP_01819647.1| transcription antitermination factor NusB [Streptococcus pneumoniae SP6-BS73] gi|148996835|ref|ZP_01824553.1| transcription antitermination factor NusB [Streptococcus pneumoniae SP11-BS70] gi|149003529|ref|ZP_01828403.1| transcription antitermination factor NusB [Streptococcus pneumoniae SP14-BS69] gi|149012182|ref|ZP_01833291.1| transcription antitermination factor NusB [Streptococcus pneumoniae SP19-BS75] gi|149023719|ref|ZP_01836199.1| transcription antitermination factor NusB [Streptococcus pneumoniae SP23-BS72] gi|168482670|ref|ZP_02707622.1| transcription antitermination factor NusB [Streptococcus pneumoniae CDC1873-00] gi|168490656|ref|ZP_02714799.1| transcription antitermination factor NusB [Streptococcus pneumoniae CDC0288-04] gi|168495037|ref|ZP_02719180.1| transcription antitermination factor NusB [Streptococcus pneumoniae CDC3059-06] gi|169832898|ref|YP_001693937.1| transcription antitermination protein NusB [Streptococcus pneumoniae Hungary19A-6] gi|194396779|ref|YP_002037111.1| transcription antitermination protein NusB [Streptococcus pneumoniae G54] gi|221231296|ref|YP_002510448.1| N utilization substance protein B homolog (NusB protein) [Streptococcus pneumoniae ATCC 700669] gi|225856159|ref|YP_002737670.1| transcription antitermination protein NusB [Streptococcus pneumoniae P1031] gi|225860454|ref|YP_002741963.1| transcription antitermination protein NusB [Streptococcus pneumoniae Taiwan19F-14] gi|237650354|ref|ZP_04524606.1| transcription antitermination protein NusB [Streptococcus pneumoniae CCRI 1974] gi|237822042|ref|ZP_04597887.1| transcription antitermination protein NusB [Streptococcus pneumoniae CCRI 1974M2] gi|298230814|ref|ZP_06964495.1| transcription antitermination protein NusB [Streptococcus pneumoniae str. Canada MDR_19F] gi|298254607|ref|ZP_06978193.1| transcription antitermination protein NusB [Streptococcus pneumoniae str. Canada MDR_19A] gi|298502226|ref|YP_003724166.1| transcription antitermination protein NusB [Streptococcus pneumoniae TCH8431/19A] gi|307067077|ref|YP_003876043.1| transcription termination factor [Streptococcus pneumoniae AP200] gi|54037926|sp|P65583|NUSB_STRR6 RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|54041676|sp|P65582|NUSB_STRPN RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|122279211|sp|Q04M45|NUSB_STRP2 RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|238688321|sp|B1I9M4|NUSB_STRPI RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|238690799|sp|B5E1P3|NUSB_STRP4 RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|254772658|sp|B8ZLJ7|NUSB_STRPJ RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|254772661|sp|C1CIT2|NUSB_STRZP RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|254772662|sp|C1CPU1|NUSB_STRZT RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|14971902|gb|AAK74595.1| N utilization substance protein B [Streptococcus pneumoniae TIGR4] gi|116076803|gb|ABJ54523.1| transcription antitermination factor NusB [Streptococcus pneumoniae D39] gi|147757410|gb|EDK64449.1| transcription antitermination factor NusB [Streptococcus pneumoniae SP11-BS70] gi|147758465|gb|EDK65464.1| transcription antitermination factor NusB [Streptococcus pneumoniae SP14-BS69] gi|147763784|gb|EDK70718.1| transcription antitermination factor NusB [Streptococcus pneumoniae SP19-BS75] gi|147923974|gb|EDK75086.1| transcription antitermination factor NusB [Streptococcus pneumoniae SP3-BS71] gi|147926648|gb|EDK77721.1| transcription antitermination factor NusB [Streptococcus pneumoniae SP6-BS73] gi|147929656|gb|EDK80648.1| transcription antitermination factor NusB [Streptococcus pneumoniae SP23-BS72] gi|168995400|gb|ACA36012.1| transcription antitermination factor NusB [Streptococcus pneumoniae Hungary19A-6] gi|172043807|gb|EDT51853.1| transcription antitermination factor NusB [Streptococcus pneumoniae CDC1873-00] gi|183575029|gb|EDT95557.1| transcription antitermination factor NusB [Streptococcus pneumoniae CDC0288-04] gi|183575089|gb|EDT95617.1| transcription antitermination factor NusB [Streptococcus pneumoniae CDC3059-06] gi|194356446|gb|ACF54894.1| transcription antitermination factor NusB [Streptococcus pneumoniae G54] gi|220673756|emb|CAR68255.1| N utilization substance protein B homolog (NusB protein) [Streptococcus pneumoniae ATCC 700669] gi|225725650|gb|ACO21502.1| transcription antitermination factor NusB [Streptococcus pneumoniae P1031] gi|225726476|gb|ACO22327.1| transcription antitermination factor NusB [Streptococcus pneumoniae Taiwan19F-14] gi|298237821|gb|ADI68952.1| transcription antitermination protein NusB [Streptococcus pneumoniae TCH8431/19A] gi|301799529|emb|CBW32077.1| N utilization substance protein B homolog (NusB protein) [Streptococcus pneumoniae OXC141] gi|306408614|gb|ADM84041.1| Transcription termination factor [Streptococcus pneumoniae AP200] gi|327390840|gb|EGE89180.1| transcription antitermination factor NusB [Streptococcus pneumoniae GA04375] gi|332202338|gb|EGJ16407.1| transcription antitermination factor NusB [Streptococcus pneumoniae GA41317] gi|332203602|gb|EGJ17669.1| transcription antitermination factor NusB [Streptococcus pneumoniae GA47368] gi|332204458|gb|EGJ18523.1| transcription antitermination factor NusB [Streptococcus pneumoniae GA47901] Length = 140 Score = 50.1 bits (118), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 34/117 (29%), Positives = 55/117 (47%), Gaps = 8/117 (6%) Query: 49 FCADTELDVESVYLH------VDLEWFRV-IIHGVMDRKQHIDLLISSCLTEKWSFSRLD 101 F D E Y H V L F + ++ GV +K+ +D I+ L W+ RL Sbjct: 25 FGTDVETACRFAYTHDREDTDVQLPAFLIDLVSGVQAKKEELDKQITQHLKAGWTIERLT 84 Query: 102 MILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEE 158 ++ ++LR GV E I P V ++E + +A DF +FIN +L + +E+ Sbjct: 85 LVERNLLRLGVFE-ITSFDTPQLVAVNEAIELAKDFSDQKSARFINGLLSQFVTEEQ 140 >gi|224283414|ref|ZP_03646736.1| NusB antitermination factor [Bifidobacterium bifidum NCIMB 41171] gi|313140569|ref|ZP_07802762.1| transcription termination factor [Bifidobacterium bifidum NCIMB 41171] gi|313133079|gb|EFR50696.1| transcription termination factor [Bifidobacterium bifidum NCIMB 41171] Length = 223 Score = 50.1 bits (118), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 37/136 (27%), Positives = 60/136 (44%), Gaps = 14/136 (10%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV-IIH 74 R AR A+ LY+ D G +++E +E L + + I+ Sbjct: 3 RSTARKRALNTLYEADEKGQDFLSLLAER------------IEEPGAQTPLPDYAIEIVR 50 Query: 75 GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134 GV D ++ ID +++ T W R+ ++ +ILR E+I VP V I E + +A Sbjct: 51 GVADHRREIDYMLNEHST-GWKVRRMAVVDRNILRIAAWEIIFNDDVPDRVAIDEALGLA 109 Query: 135 HDFFYGDEPKFINAVL 150 GD P FI+ +L Sbjct: 110 KTLSDGDSPAFIHGLL 125 >gi|71083732|ref|YP_266452.1| antitermination protein NusB [Candidatus Pelagibacter ubique HTCC1062] gi|71062845|gb|AAZ21848.1| Antitermination protein NusB [Candidatus Pelagibacter ubique HTCC1062] Length = 134 Score = 50.1 bits (118), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 27/108 (25%), Positives = 57/108 (52%), Gaps = 3/108 (2%) Query: 49 FCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSIL 108 F DT+L H ++ + ++ G ++R + I + L+E + LD + I+ Sbjct: 24 FNDDTDLTFPK---HRFKKFIKDVVLGTIERDEVIKEEVKKYLSEDLELTNLDQVFQVIV 80 Query: 109 RAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRK 156 ++ + E + V ++II EY+ ++ F + K++NA+LDK+++K Sbjct: 81 KSAIFEFLYKPKVSSKIIIKEYLDASNFFLEDGQTKYLNAILDKIAKK 128 >gi|303232700|ref|ZP_07319385.1| transcription antitermination factor NusB [Atopobium vaginae PB189-T1-4] gi|302481186|gb|EFL44261.1| transcription antitermination factor NusB [Atopobium vaginae PB189-T1-4] Length = 192 Score = 50.1 bits (118), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 27/90 (30%), Positives = 48/90 (53%), Gaps = 1/90 (1%) Query: 67 EWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVI 126 E+ R + G + +D LI+ T W+ +RL + +I+R + E++ V V V Sbjct: 48 EFARTLALGADAVRDKLDALIADTAT-NWNVTRLLSVDRNIIRLALFEMLHVDDVDVAVT 106 Query: 127 ISEYVCIAHDFFYGDEPKFINAVLDKVSRK 156 I+E+V +A + D F+N VL +V+R+ Sbjct: 107 INEFVILAKAYGTDDSAAFVNGVLGQVARR 136 >gi|258405547|ref|YP_003198289.1| NusB antitermination factor [Desulfohalobium retbaense DSM 5692] gi|257797774|gb|ACV68711.1| NusB antitermination factor [Desulfohalobium retbaense DSM 5692] Length = 147 Score = 50.1 bits (118), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 39/142 (27%), Positives = 65/142 (45%), Gaps = 10/142 (7%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 R + R A Q LY ++ + T+ + E E+ D W ++ G Sbjct: 9 RRLGRQTAFQVLYSLNFQESHGNGLALLQRTFTHLIEQEEVGEAA---ADFAW--ELVQG 63 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135 V + + +D LIS ++ W R+ I SILR + E+ +P +V I+E V +A Sbjct: 64 VWENRDELDELISRH-SQHWRVGRIAKIELSILRLALYEMYFRSDIPPKVAINEGVELAK 122 Query: 136 DFFYGDEPK--FINAVLDKVSR 155 +F GDE F+N +LD ++ Sbjct: 123 EF--GDEQSRGFVNGILDAAAK 142 >gi|37520905|ref|NP_924282.1| transcription antitermination protein NusB [Gloeobacter violaceus PCC 7421] gi|39931743|sp|Q7NKZ0|NUSB_GLOVI RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|35211900|dbj|BAC89277.1| transcription termination factor [Gloeobacter violaceus PCC 7421] Length = 211 Score = 50.1 bits (118), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 27/72 (37%), Positives = 40/72 (55%), Gaps = 1/72 (1%) Query: 82 HIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGD 141 ++D L+ +C+ E W RL I ILR ++E++E SVP V I E V +A + Sbjct: 129 NLDKLLDTCM-EGWQVERLTRIDRDILRLALVEMVELKSVPFRVAIDEAVELAKKYSTDT 187 Query: 142 EPKFINAVLDKV 153 +FIN VL +V Sbjct: 188 AVRFINGVLRRV 199 >gi|21241522|ref|NP_641104.1| transcription antitermination protein NusB [Xanthomonas axonopodis pv. citri str. 306] gi|24638072|sp|Q8PPD5|NUSB_XANAC RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|21106870|gb|AAM35640.1| transcription termination factor NusB [Xanthomonas axonopodis pv. citri str. 306] Length = 159 Score = 50.1 bits (118), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 37/143 (25%), Positives = 63/143 (44%), Gaps = 16/143 (11%) Query: 25 QALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHID 84 QA+Y I G ++I+++ E + DL +F ++ GV+ + +D Sbjct: 30 QAVYAWQISGGFAKQVIAQFAH-----------EQAHEVADLAYFENLVEGVLSNRAELD 78 Query: 85 LLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPK 144 ++ L S +D I ++LR EL+ VP V+I+E + A F Sbjct: 79 TALTPYLDR--SVEEVDAIERAVLRLAAYELLYRQDVPYRVVINEAIETAKRFGSEHGHT 136 Query: 145 FINAVLDKVS---RKEEIKRSGC 164 ++N VLD+ + RK E SG Sbjct: 137 YVNGVLDRAAVEWRKVESGASGA 159 >gi|282891352|ref|ZP_06299854.1| hypothetical protein pah_c050o153 [Parachlamydia acanthamoebae str. Hall's coccus] gi|281498849|gb|EFB41166.1| hypothetical protein pah_c050o153 [Parachlamydia acanthamoebae str. Hall's coccus] Length = 187 Score = 50.1 bits (118), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 26/87 (29%), Positives = 53/87 (60%), Gaps = 1/87 (1%) Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135 V+++K ID LI++ + ++ F R+ + ++LR G+ E++ S+P +V I+E + ++ Sbjct: 54 VLEKKAEIDDLIANT-SREYRFERIQTVEKNVLRLGIYEMLFDDSIPPKVAIAEAIRLSR 112 Query: 136 DFFYGDEPKFINAVLDKVSRKEEIKRS 162 F + F+NA+LD + + +E K S Sbjct: 113 KFSTPESATFVNALLDHIYQTKEGKVS 139 >gi|21230173|ref|NP_636090.1| transcription antitermination protein NusB [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66769837|ref|YP_244599.1| transcription antitermination protein NusB [Xanthomonas campestris pv. campestris str. 8004] gi|188993052|ref|YP_001905062.1| transcription antitermination protein NusB [Xanthomonas campestris pv. campestris str. B100] gi|24638071|sp|Q8PCM6|NUSB_XANCP RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|81304209|sp|Q4UQU4|NUSB_XANC8 RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|229620372|sp|B0RVD1|NUSB_XANCB RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|21111708|gb|AAM40014.1| transcription termination factor NusB [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66575169|gb|AAY50579.1| transcription termination factor NusB [Xanthomonas campestris pv. campestris str. 8004] gi|167734812|emb|CAP53022.1| antitermination factor, NusB family [Xanthomonas campestris pv. campestris] Length = 159 Score = 50.1 bits (118), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 36/143 (25%), Positives = 62/143 (43%), Gaps = 16/143 (11%) Query: 25 QALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHID 84 QA+Y I G ++I+++ E + DL +F ++ GV+ + +D Sbjct: 30 QAVYAWQIAGGFAKQVIAQFAH-----------EQAHEVADLAYFESLVEGVLSNRSELD 78 Query: 85 LLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPK 144 ++ L +D I ++LR EL+ VP V+I+E + A F Sbjct: 79 TALTPYLDR--GVEEVDAIERAVLRLAAYELLYRQDVPYRVVINEAIETAKRFGSEHGHT 136 Query: 145 FINAVLDKVS---RKEEIKRSGC 164 ++N VLD+ + RK E SG Sbjct: 137 YVNGVLDRAAVEWRKMESGASGA 159 >gi|310287767|ref|YP_003939025.1| antitermination factor NusB [Bifidobacterium bifidum S17] gi|309251703|gb|ADO53451.1| antitermination factor NusB [Bifidobacterium bifidum S17] Length = 223 Score = 50.1 bits (118), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 37/136 (27%), Positives = 60/136 (44%), Gaps = 14/136 (10%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV-IIH 74 R AR A+ LY+ D G +++E +E L + + I+ Sbjct: 3 RSTARKRALNTLYEADEKGQDFLSLLAER------------IEEPGAQTPLPDYAIEIVR 50 Query: 75 GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134 GV D ++ ID +++ T W R+ ++ +ILR E+I VP V I E + +A Sbjct: 51 GVADHRREIDYMLNEHST-GWKVRRMAVVDRNILRIAAWEIIFNDDVPDRVAIDEALGLA 109 Query: 135 HDFFYGDEPKFINAVL 150 GD P FI+ +L Sbjct: 110 KTLSDGDSPAFIHGLL 125 >gi|262280550|ref|ZP_06058334.1| transcription termination L factor [Acinetobacter calcoaceticus RUH2202] gi|262258328|gb|EEY77062.1| transcription termination L factor [Acinetobacter calcoaceticus RUH2202] Length = 149 Score = 50.1 bits (118), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 37/136 (27%), Positives = 62/136 (45%), Gaps = 13/136 (9%) Query: 19 ARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMD 78 AR AVQ +Y+ + EI + E+ VDL ++ ++ V+ Sbjct: 15 ARRFAVQGIYEWQMSHNPVHEI-----------EARTRAENAMHKVDLNYYHELLTQVIA 63 Query: 79 RKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFF 138 ++ +D L+ L + LD + + LR G EL + VP V++ E + +A F Sbjct: 64 QRDDLDALLIPVLDRE--LDALDGVELATLRLGAYELRDHLEVPYRVVLDEAIELAKHFG 121 Query: 139 YGDEPKFINAVLDKVS 154 D K+IN VLD++S Sbjct: 122 GADSHKYINGVLDRLS 137 >gi|134294984|ref|YP_001118719.1| transcription antitermination protein NusB [Burkholderia vietnamiensis G4] gi|166215672|sp|A4JC81|NUSB_BURVG RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|134138141|gb|ABO53884.1| NusB antitermination factor [Burkholderia vietnamiensis G4] Length = 145 Score = 50.1 bits (118), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 43/147 (29%), Positives = 65/147 (44%), Gaps = 14/147 (9%) Query: 10 LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF 69 +K S RR +R A Q LYQ + S+ EI D +L Y D E Sbjct: 1 MKKSARRQ-SRELATQGLYQWLLSNASSGEI-----------DAQLRGALGYDKADKELL 48 Query: 70 RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISE 129 I+HGV+ ++H L+ + + +L + ++L EL P VII+E Sbjct: 49 EAILHGVI--REHATLVEAITPSLDRPIDQLSPVERAVLLIATFELTHHVETPYRVIINE 106 Query: 130 YVCIAHDFFYGDEPKFINAVLDKVSRK 156 V + F D K++N VLDK++ K Sbjct: 107 AVELTKTFGGSDGYKYVNGVLDKLAAK 133 >gi|311064653|ref|YP_003971378.1| n utilization substance protein B NusB [Bifidobacterium bifidum PRL2010] gi|310866972|gb|ADP36341.1| NusB N utilization substance protein B [Bifidobacterium bifidum PRL2010] Length = 223 Score = 50.1 bits (118), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 37/136 (27%), Positives = 60/136 (44%), Gaps = 14/136 (10%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV-IIH 74 R AR A+ LY+ D G +++E +E L + + I+ Sbjct: 3 RSTARKRALNTLYEADEKGQDFLSLLAER------------IEEPGAQTPLPDYAIEIVR 50 Query: 75 GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134 GV D ++ ID +++ T W R+ ++ +ILR E+I VP V I E + +A Sbjct: 51 GVADHRREIDYMLNEHST-GWKVRRMAVVDRNILRIAAWEIIFNDDVPDRVAIDEALGLA 109 Query: 135 HDFFYGDEPKFINAVL 150 GD P FI+ +L Sbjct: 110 KTLSDGDSPAFIHGLL 125 >gi|269797911|ref|YP_003311811.1| sun protein [Veillonella parvula DSM 2008] gi|269094540|gb|ACZ24531.1| sun protein [Veillonella parvula DSM 2008] Length = 451 Score = 50.1 bits (118), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 41/150 (27%), Positives = 72/150 (48%), Gaps = 15/150 (10%) Query: 9 DLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEW 68 ++K + ++ I RL AV+AL +I+ G + EY +D +D + Sbjct: 3 EVKTNQQQNI-RLLAVKALSEINRNGAYANIKLQEYLQKYHLSD-----------LDRRF 50 Query: 69 FRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIIS 128 F +++GV+ RK ++D +I K +L ++ ILR G+ ++I VP ++ Sbjct: 51 FTELVYGVIRRKNYLDAII--VFFAKRPIKKLSSMVLEILRLGIYQIIYMDKVPESAAVN 108 Query: 129 EYVCIAHDFFYGDEPKFINAVLDKVSRKEE 158 E V +A G F+NAVL V R+ + Sbjct: 109 ESVKLAKKLTRGLS-GFVNAVLRSVLRESD 137 >gi|325569721|ref|ZP_08145768.1| N utilization substance protein B [Enterococcus casseliflavus ATCC 12755] gi|325157277|gb|EGC69442.1| N utilization substance protein B [Enterococcus casseliflavus ATCC 12755] Length = 154 Score = 50.1 bits (118), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 41/147 (27%), Positives = 69/147 (46%), Gaps = 11/147 (7%) Query: 20 RLAAVQALYQIDIIGCSTTE--IIS--EYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 R A+QAL+ +D T + I+ E E + + + VYL ++ G Sbjct: 11 RKMALQALFPLDFNKDLTKQDAIMHAIELEHHELIDEEQEHFVPVYL-------DQLVAG 63 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135 V K+ +D +I S L W RL + +ILR + E+I +VP V ++E + +A Sbjct: 64 VCHYKEALDEVIQSHLKAGWKIQRLSKMDVTILRIALYEMIYVDNVPNRVALNEAIELAK 123 Query: 136 DFFYGDEPKFINAVLDKVSRKEEIKRS 162 F KF+N +L V+++ E K + Sbjct: 124 TFSDDQSRKFVNGILSTVNQELETKNN 150 >gi|188590523|ref|YP_001921552.1| transcription antitermination factor NusB [Clostridium botulinum E3 str. Alaska E43] gi|238689705|sp|B2V4R8|NUSB_CLOBA RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|188500804|gb|ACD53940.1| transcription antitermination factor NusB [Clostridium botulinum E3 str. Alaska E43] Length = 133 Score = 50.1 bits (118), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 38/142 (26%), Positives = 66/142 (46%), Gaps = 10/142 (7%) Query: 15 RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74 R ++R A++ L+ + + + E + F + E D++ +D+ + + I+ Sbjct: 2 NRKLSREKAMELLFGMTLNTDNCEETLG-----NFIDNYESDIK----ELDITYIKRILI 52 Query: 75 GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134 GV + K +ID IS L W R+ + ILR V EL+ +P V I+E + I Sbjct: 53 GVENNKDNIDEAISKNLC-NWKIDRISKVNLCILRLAVYELLHDEEIPNRVAINEALEIT 111 Query: 135 HDFFYGDEPKFINAVLDKVSRK 156 + FIN VLD + +K Sbjct: 112 KKYSDEKSVSFINGVLDNILKK 133 >gi|238755140|ref|ZP_04616487.1| N utilization substance protein B [Yersinia ruckeri ATCC 29473] gi|238706700|gb|EEP99070.1| N utilization substance protein B [Yersinia ruckeri ATCC 29473] Length = 138 Score = 50.1 bits (118), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 38/122 (31%), Positives = 59/122 (48%), Gaps = 4/122 (3%) Query: 35 CSTTEIISEYETYRFCADTELDV--ESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLT 92 C+ I S + AD EL E VD+ +FR ++ GV +D ++ L+ Sbjct: 12 CAVQAIYSWQLSKNDIADVELQFLSEQDVKDVDITYFRELLSGVAVNVTALDASMAPYLS 71 Query: 93 EKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDK 152 + L + +ILR + EL + VP +V I+E + +A F D KF+N VLDK Sbjct: 72 RQ--LEELGQVEKAILRLAIFELSKRDDVPYKVAINEAIELAKIFGAEDSHKFVNGVLDK 129 Query: 153 VS 154 V+ Sbjct: 130 VA 131 >gi|227363166|ref|ZP_03847300.1| transcription antitermination protein NusB [Lactobacillus reuteri MM2-3] gi|227071772|gb|EEI10061.1| transcription antitermination protein NusB [Lactobacillus reuteri MM2-3] Length = 141 Score = 50.1 bits (118), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 31/117 (26%), Positives = 55/117 (47%), Gaps = 7/117 (5%) Query: 47 YRFCADTELDVESVY---LHVD----LEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSR 99 + +D+E D+++VY H D + +++GV + + +D I+ L W+ +R Sbjct: 20 FALQSDSEADIQTVYEAIPHHDEKQIPPYLLTLVNGVREHQDQLDEQINDLLASGWTINR 79 Query: 100 LDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRK 156 L ILR + E+ +VP V I+E + + F KFIN L K ++ Sbjct: 80 LAKPDLVILRLALFEIQYAENVPTVVAINEALELTKTFSSDKSRKFINGALGKFEKQ 136 >gi|325682729|ref|ZP_08162245.1| N utilization substance protein B [Lactobacillus reuteri MM4-1A] gi|324977079|gb|EGC14030.1| N utilization substance protein B [Lactobacillus reuteri MM4-1A] Length = 132 Score = 50.1 bits (118), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 31/117 (26%), Positives = 55/117 (47%), Gaps = 7/117 (5%) Query: 47 YRFCADTELDVESVY---LHVD----LEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSR 99 + +D+E D+++VY H D + +++GV + + +D I+ L W+ +R Sbjct: 11 FALQSDSEADIQTVYEAIPHHDEKQIPPYLLTLVNGVREHQDQLDEQINDLLASGWTINR 70 Query: 100 LDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRK 156 L ILR + E+ +VP V I+E + + F KFIN L K ++ Sbjct: 71 LAKPDLVILRLALFEIQYAENVPTVVAINEALELTKTFSSDKSRKFINGALGKFEKQ 127 >gi|226323208|ref|ZP_03798726.1| hypothetical protein COPCOM_00980 [Coprococcus comes ATCC 27758] gi|225208398|gb|EEG90752.1| hypothetical protein COPCOM_00980 [Coprococcus comes ATCC 27758] Length = 130 Score = 50.1 bits (118), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 27/87 (31%), Positives = 47/87 (54%), Gaps = 1/87 (1%) Query: 68 WFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVII 127 + R + + ++ ID +I+ T W R++ + S+LR V E+ VPV+V I Sbjct: 45 YMRKKVKDIAAHEEEIDAMINEHTT-GWKTGRMNKVDLSVLRLAVYEMKWDDEVPVKVAI 103 Query: 128 SEYVCIAHDFFYGDEPKFINAVLDKVS 154 +E V +A +F + P F+N VL K++ Sbjct: 104 NEAVELAKNFSGDEGPAFVNGVLGKLA 130 >gi|91763232|ref|ZP_01265196.1| Antitermination protein NusB [Candidatus Pelagibacter ubique HTCC1002] gi|91717645|gb|EAS84296.1| Antitermination protein NusB [Candidatus Pelagibacter ubique HTCC1002] Length = 134 Score = 50.1 bits (118), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 27/108 (25%), Positives = 57/108 (52%), Gaps = 3/108 (2%) Query: 49 FCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSIL 108 F DT+L H ++ + ++ G ++R + I + L+E + LD + I+ Sbjct: 24 FNDDTDLTFPK---HRFKKFIKDVVLGTIERDEVIKEEVRKYLSEDIELTNLDQVFQVIV 80 Query: 109 RAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRK 156 ++ + E + V ++II EY+ ++ F + K++NA+LDK+++K Sbjct: 81 KSAIFEFLYKPKVSSKIIIKEYLNASNFFLEDGQTKYLNAILDKIAKK 128 >gi|322379027|ref|ZP_08053430.1| transcription antitermination protein NusB [Helicobacter suis HS1] gi|322380793|ref|ZP_08054899.1| transcription antitermination protein NusB [Helicobacter suis HS5] gi|321146797|gb|EFX41591.1| transcription antitermination protein NusB [Helicobacter suis HS5] gi|321148519|gb|EFX43016.1| transcription antitermination protein NusB [Helicobacter suis HS1] Length = 133 Score = 50.1 bits (118), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 23/86 (26%), Positives = 50/86 (58%), Gaps = 2/86 (2%) Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131 ++ G +DR +++D ++ L + W R+ + +ILR G E++ + P ++I+E + Sbjct: 49 LLKGTLDRLENLDQILQPLLKD-WPIKRIGSMERAILRLGAYEVLYTTTKP-PIVINEAI 106 Query: 132 CIAHDFFYGDEPKFINAVLDKVSRKE 157 +A + PK INA+LD +++++ Sbjct: 107 ELAKQYGEDQAPKLINAILDVLAKQK 132 >gi|257885163|ref|ZP_05664816.1| antitermination protein NusB [Enterococcus faecium 1,231,501] gi|257821015|gb|EEV48149.1| antitermination protein NusB [Enterococcus faecium 1,231,501] Length = 149 Score = 50.1 bits (118), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 39/141 (27%), Positives = 65/141 (46%), Gaps = 7/141 (4%) Query: 20 RLAAVQALYQIDIIGCSTTE--IISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVM 77 R A+QAL+ +D T E I + E E + E V +++D ++ GV Sbjct: 11 REMALQALFPLDFNADLTKEDAIFNAIELDHRDMINEDESEFVPVYLD-----TLVGGVC 65 Query: 78 DRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDF 137 +K +D +I L W +R+ + +ILR + E+ VP V ++E + +A F Sbjct: 66 AKKDELDKVIEKHLKNNWHINRISKMDLAILRIAIFEMTYVTDVPAAVALNEAIELAKTF 125 Query: 138 FYGDEPKFINAVLDKVSRKEE 158 KF+N VL V ++ E Sbjct: 126 SDDRSRKFVNGVLSNVLKELE 146 >gi|170782398|ref|YP_001710731.1| transcription termination protein [Clavibacter michiganensis subsp. sepedonicus] gi|189035882|sp|B0REX0|NUSB_CLAMS RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|169156967|emb|CAQ02136.1| transcription termination protein [Clavibacter michiganensis subsp. sepedonicus] Length = 137 Score = 50.1 bits (118), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 39/139 (28%), Positives = 64/139 (46%), Gaps = 9/139 (6%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 R AR A+ LY DI G S ++ E R A+ + Y R I G Sbjct: 4 RTKARKRALDVLYVADIRGESIPATLA-VEQQRAAAEPDRQASWAYA-------REIAEG 55 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135 ++ + ID LI + + W+ +R+ + +ILR G+ E++ VP V ISE V +A Sbjct: 56 FVEHQDEIDELIET-YSVNWTLARMPAVDRAILRIGIWEILFNADVPDGVAISESVDLAS 114 Query: 136 DFFYGDEPKFINAVLDKVS 154 + F+N +L +++ Sbjct: 115 SLSTDESASFVNGMLARIA 133 >gi|145630810|ref|ZP_01786588.1| transcription antitermination protein NusB [Haemophilus influenzae R3021] gi|144983692|gb|EDJ91152.1| transcription antitermination protein NusB [Haemophilus influenzae R3021] Length = 121 Score = 50.1 bits (118), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 34/106 (32%), Positives = 54/106 (50%), Gaps = 8/106 (7%) Query: 49 FCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSIL 108 F D ++D VD +FR + ++ + +D IS + +F LD I +IL Sbjct: 18 FVLDQDMD------GVDKPYFRKLFRQTIENIETVDFSISPYIDR--AFDELDPIETAIL 69 Query: 109 RAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVS 154 R V EL VP +V+I+E + +A F + K+IN VLDK++ Sbjct: 70 RLAVYELRFELDVPYKVVINEAIEVAKVFGADESHKYINGVLDKIA 115 >gi|148544409|ref|YP_001271779.1| transcription antitermination protein NusB [Lactobacillus reuteri DSM 20016] gi|184153772|ref|YP_001842113.1| transcription antitermination protein NusB [Lactobacillus reuteri JCM 1112] gi|166918809|sp|A5VKR8|NUSB_LACRD RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|229620058|sp|B2G851|NUSB_LACRJ RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|148531443|gb|ABQ83442.1| NusB antitermination factor [Lactobacillus reuteri DSM 20016] gi|183225116|dbj|BAG25633.1| transcription termination factor [Lactobacillus reuteri JCM 1112] Length = 138 Score = 50.1 bits (118), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 31/117 (26%), Positives = 55/117 (47%), Gaps = 7/117 (5%) Query: 47 YRFCADTELDVESVY---LHVD----LEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSR 99 + +D+E D+++VY H D + +++GV + + +D I+ L W+ +R Sbjct: 17 FALQSDSEADIQTVYEAIPHHDEKQIPPYLLTLVNGVREHQDQLDEQINDLLASGWTINR 76 Query: 100 LDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRK 156 L ILR + E+ +VP V I+E + + F KFIN L K ++ Sbjct: 77 LAKPDLVILRLALFEIQYAENVPTVVAINEALELTKTFSSDKSRKFINGALGKFEKQ 133 >gi|160897907|ref|YP_001563489.1| NusB antitermination factor [Delftia acidovorans SPH-1] gi|238687189|sp|A9BVN7|NUSB_DELAS RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|160363491|gb|ABX35104.1| NusB antitermination factor [Delftia acidovorans SPH-1] Length = 212 Score = 50.1 bits (118), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 46/160 (28%), Positives = 78/160 (48%), Gaps = 18/160 (11%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 R AR A+QALYQ ++G + E I RF D S + D + ++ G Sbjct: 35 RSRAREFALQALYQ-HLVGGNDVEAID-----RFTRDL-----SGFHKADSVHYDALLRG 83 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135 ++ + +D LI+ L + + + I + + GV E C VP V+++E + +A Sbjct: 84 CINSQVDLDALIAPKLDR--TMAEISPIEHASMWIGVYEFQHCPDVPWRVVLNECIELAK 141 Query: 136 DFFYGDEPKFINAVLDKVS---RKEEIK--RSGCVSAITQ 170 +F D K++NAVL+ ++ R E++ R+G SA Q Sbjct: 142 EFGGTDGHKYVNAVLNGLAPTLRAAEVEHDRAGKGSAPAQ 181 >gi|295839941|ref|ZP_06826874.1| transcription antitermination factor NusB [Streptomyces sp. SPB74] gi|197696775|gb|EDY43708.1| transcription antitermination factor NusB [Streptomyces sp. SPB74] Length = 144 Score = 49.7 bits (117), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 35/137 (25%), Positives = 65/137 (47%), Gaps = 9/137 (6%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 R AR A Q L++ D G +++++ + +DT+ S Y +E ++ G Sbjct: 4 RNTARKRAFQILFEADQRGTDVLTVLADWVRHS-RSDTQQPPVSEYT---ME----LVEG 55 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135 + ID +I+ + W R+ ++ +I+R G EL+ P V++ E V +A Sbjct: 56 YAAHARRIDEVIAKYSVD-WPLDRMPVVDRNIVRLGAHELVWVDGTPDAVVMDEAVELAK 114 Query: 136 DFFYGDEPKFINAVLDK 152 +F D P F+N +L + Sbjct: 115 EFSTDDSPAFVNGLLGR 131 >gi|288549985|ref|ZP_05968867.2| transcription antitermination factor NusB [Enterobacter cancerogenus ATCC 35316] gi|288316874|gb|EFC55812.1| transcription antitermination factor NusB [Enterobacter cancerogenus ATCC 35316] Length = 118 Score = 49.7 bits (117), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 34/108 (31%), Positives = 56/108 (51%), Gaps = 8/108 (7%) Query: 47 YRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCS 106 Y+F +E DV+ V D+ +FR ++ GV ++D L+ L+ L + + Sbjct: 11 YQFL--SEQDVKDV----DVLYFRELLSGVATNSAYLDGLMKPYLSR--LLEELGQVEKA 62 Query: 107 ILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVS 154 +LR + EL + VP +V I+E + +A F D KF+N VLDK + Sbjct: 63 VLRIALFELSKRDDVPYKVAINEAIELAKTFGAEDSHKFVNGVLDKAA 110 >gi|295397759|ref|ZP_06807828.1| transcription antitermination factor NusB [Aerococcus viridans ATCC 11563] gi|294973971|gb|EFG49729.1| transcription antitermination factor NusB [Aerococcus viridans ATCC 11563] Length = 217 Score = 49.7 bits (117), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 31/105 (29%), Positives = 54/105 (51%), Gaps = 6/105 (5%) Query: 68 WFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELI--ECHSVPVEV 125 + R ++ GV + ID +I + + WS RL+++ ILR V EL+ + +VP V Sbjct: 93 YLRTLVEGVKANRFEIDQMIDNHIHGNWSVQRLELVNLQILRVAVFELLFTDEETVPRVV 152 Query: 126 IISEYVCIAHDFFYGDE--PKFINAVLDKVSRKEEIKRSGCVSAI 168 ++E + +A Y D+ KFIN +L V + + +G V + Sbjct: 153 AVNEAIELAK--LYSDDRARKFINGILSNVLAELKANANGDVKPV 195 >gi|225166064|ref|ZP_03727805.1| NusB antitermination factor [Opitutaceae bacterium TAV2] gi|224799698|gb|EEG18186.1| NusB antitermination factor [Opitutaceae bacterium TAV2] Length = 154 Score = 49.7 bits (117), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 41/152 (26%), Positives = 71/152 (46%), Gaps = 14/152 (9%) Query: 12 LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71 + RR +R+AA+Q L+ S + E R +T+ Y + D Sbjct: 6 FAQRRD-SRVAAMQYLF-----AWSMNAPQNLSEDLRAFYETQEHPREHYAYAD-----E 54 Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131 ++ GV+ ID I + L + W F R+ I +ILR + E+I VP V I+E + Sbjct: 55 VVDGVIRNLVEIDARIRT-LAQNWEFDRIARIDLTILRVAIYEMIFRKDVPPVVSINEAI 113 Query: 132 CIAHDFFYGDEPKFINAVLDKVSRKEEIKRSG 163 ++ + D +FIN +LD++ K+++ R Sbjct: 114 NLSKTYSNSDAKRFINGILDRL--KDQLGRDA 143 >gi|251778082|ref|ZP_04821002.1| transcription antitermination factor NusB [Clostridium botulinum E1 str. 'BoNT E Beluga'] gi|243082397|gb|EES48287.1| transcription antitermination factor NusB [Clostridium botulinum E1 str. 'BoNT E Beluga'] Length = 133 Score = 49.7 bits (117), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 38/142 (26%), Positives = 66/142 (46%), Gaps = 10/142 (7%) Query: 15 RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74 R ++R A++ L+ + + + E + F + E D++ +D+ + + I+ Sbjct: 2 NRKLSREKAMELLFGMTLNTDNCEETLE-----NFIDNYESDIK----ELDITYIKRILI 52 Query: 75 GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134 GV + K +ID IS L W R+ + ILR V EL+ +P V I+E + I Sbjct: 53 GVENNKDNIDEAISKNLC-NWKIDRISKVNLCILRLAVYELLHDEEIPNRVAINEALEIT 111 Query: 135 HDFFYGDEPKFINAVLDKVSRK 156 + FIN VLD + +K Sbjct: 112 KKYSDEKSVSFINGVLDNILKK 133 >gi|320104116|ref|YP_004179707.1| NusB antitermination factor [Isosphaera pallida ATCC 43644] gi|319751398|gb|ADV63158.1| NusB antitermination factor [Isosphaera pallida ATCC 43644] Length = 177 Score = 49.7 bits (117), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 36/131 (27%), Positives = 58/131 (44%), Gaps = 12/131 (9%) Query: 24 VQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHI 83 +Q LY +D + E I ++ +R + D R +I GV ++ I Sbjct: 14 LQVLYMLDHNTGLSQEEIEQFLAWRLREPSWRDEA-----------RGLIEGVRRHRETI 62 Query: 84 DLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEP 143 D +IS L W R+ I ++LR G E++ VPV V I+E V + F Sbjct: 63 DQVISD-LARNWRLDRMAAIDRNVLRLGTYEVLYRLDVPVAVAITEAVELVKRFGSAQSS 121 Query: 144 KFINAVLDKVS 154 +F+N +L +V Sbjct: 122 RFVNGILGRVP 132 >gi|298245582|ref|ZP_06969388.1| NusB antitermination factor [Ktedonobacter racemifer DSM 44963] gi|297553063|gb|EFH86928.1| NusB antitermination factor [Ktedonobacter racemifer DSM 44963] Length = 147 Score = 49.7 bits (117), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 38/139 (27%), Positives = 63/139 (45%), Gaps = 14/139 (10%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDL-EWFRVIIH 74 R AR+ A+Q LY+ D++ EI+ + E LH + E+ + + Sbjct: 5 RRQARMVALQTLYEYDMVHHDPLEILQRH------------AEERNLHAKVVEYAQELAE 52 Query: 75 GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134 GV ID I S E W ++ + +ILR + E++ ++VP + I+E V +A Sbjct: 53 GVCKHLADIDAHIQSAARE-WPLQQMARVDKNILRLAIYEILFNNTVPAKAAINEAVELA 111 Query: 135 HDFFYGDEPKFINAVLDKV 153 F +FIN VL + Sbjct: 112 KLFGSDTSSRFINGVLGTI 130 >gi|311894818|dbj|BAJ27226.1| putative N utilization substance protein B homolog [Kitasatospora setae KM-6054] Length = 145 Score = 49.7 bits (117), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 38/151 (25%), Positives = 69/151 (45%), Gaps = 7/151 (4%) Query: 12 LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71 ++ R AR A Q L++ D G S +++++ + + V E+ Sbjct: 1 MATARSKARTRAFQILFEADHRGVSPERVLADWIARARDPRPDEGIPQV-----AEYTMQ 55 Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131 ++ G + ID LIS+ W+ R+ + +++R G ELI P V++ E V Sbjct: 56 LVEGYAQHARTIDDLISTYAV-GWTIDRMPIADRNVIRLGAYELIWEDGTPDAVVLDEAV 114 Query: 132 CIAHDFFYGDEPKFINAVLDK-VSRKEEIKR 161 IA +F + P F+N +L + + K I+R Sbjct: 115 EIAKEFSTDESPAFVNGLLARFMELKPSIRR 145 >gi|257865766|ref|ZP_05645419.1| antitermination protein NusB [Enterococcus casseliflavus EC30] gi|257872101|ref|ZP_05651754.1| antitermination protein NusB [Enterococcus casseliflavus EC10] gi|257799700|gb|EEV28752.1| antitermination protein NusB [Enterococcus casseliflavus EC30] gi|257806265|gb|EEV35087.1| antitermination protein NusB [Enterococcus casseliflavus EC10] Length = 154 Score = 49.7 bits (117), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 41/147 (27%), Positives = 69/147 (46%), Gaps = 11/147 (7%) Query: 20 RLAAVQALYQIDIIGCSTTE--IIS--EYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 R A+QAL+ +D T + I+ E E + + + VYL ++ G Sbjct: 11 RKMALQALFPLDFNKDLTKQDAIMHAIELEHHELIDEEQEHFVPVYL-------DQLVAG 63 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135 V K+ +D +I S L W RL + +ILR + E+I +VP V ++E + +A Sbjct: 64 VCHYKEALDEVIQSHLKSGWKIQRLSKMDVTILRIALYEMIYVDNVPNRVALNEAIELAK 123 Query: 136 DFFYGDEPKFINAVLDKVSRKEEIKRS 162 F KF+N +L V+++ E K + Sbjct: 124 TFSDDQSRKFVNGILSTVNQELETKTN 150 >gi|270293308|ref|ZP_06199517.1| N utilization substance protein B [Streptococcus sp. M143] gi|270278157|gb|EFA24005.1| N utilization substance protein B [Streptococcus sp. M143] Length = 146 Score = 49.7 bits (117), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 34/117 (29%), Positives = 54/117 (46%), Gaps = 8/117 (6%) Query: 49 FCADTELDVESVYLH------VDLEWFRV-IIHGVMDRKQHIDLLISSCLTEKWSFSRLD 101 F D E Y H V L F ++ GV +K+ +D I+ L W+ RL Sbjct: 31 FGTDVETACRFAYTHDREDTDVQLPAFLTELVSGVQAKKEELDKQITQHLKAGWTIERLT 90 Query: 102 MILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEE 158 ++ ++LR GV E I P V ++E + +A DF +FIN +L + +E+ Sbjct: 91 LVERNLLRLGVFE-ITSFDTPQLVAVNEAIELAKDFSDQKSARFINGLLSQFVTEEQ 146 >gi|291613126|ref|YP_003523283.1| NusB antitermination factor [Sideroxydans lithotrophicus ES-1] gi|291583238|gb|ADE10896.1| NusB antitermination factor [Sideroxydans lithotrophicus ES-1] Length = 150 Score = 49.7 bits (117), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 30/90 (33%), Positives = 46/90 (51%), Gaps = 2/90 (2%) Query: 65 DLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVE 124 D E+F +++G + + + I+ L K L + S+L G ELI VP Sbjct: 52 DTEFFGQLLNGAIAHHEALSAQIAPHLDRK--LDELSPVEYSVLLLGAYELIHHPEVPYR 109 Query: 125 VIISEYVCIAHDFFYGDEPKFINAVLDKVS 154 V+I+E V +A F D KF+N VLDK++ Sbjct: 110 VVINEAVELAKTFGGSDGHKFVNGVLDKLA 139 >gi|115350870|ref|YP_772709.1| transcription antitermination protein NusB [Burkholderia ambifaria AMMD] gi|170702886|ref|ZP_02893730.1| NusB antitermination factor [Burkholderia ambifaria IOP40-10] gi|171321369|ref|ZP_02910324.1| NusB antitermination factor [Burkholderia ambifaria MEX-5] gi|172059882|ref|YP_001807534.1| transcription antitermination protein NusB [Burkholderia ambifaria MC40-6] gi|122323813|sp|Q0BHJ8|NUSB_BURCM RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|238689186|sp|B1YUJ1|NUSB_BURA4 RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|115280858|gb|ABI86375.1| NusB antitermination factor [Burkholderia ambifaria AMMD] gi|170132203|gb|EDT00687.1| NusB antitermination factor [Burkholderia ambifaria IOP40-10] gi|171093347|gb|EDT38540.1| NusB antitermination factor [Burkholderia ambifaria MEX-5] gi|171992399|gb|ACB63318.1| NusB antitermination factor [Burkholderia ambifaria MC40-6] Length = 145 Score = 49.7 bits (117), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 43/147 (29%), Positives = 65/147 (44%), Gaps = 14/147 (9%) Query: 10 LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF 69 +K S RR +R A Q LYQ + + EI D +L Y D E Sbjct: 1 MKKSARR-QSRELATQGLYQWLLSNAAPGEI-----------DAQLRGALGYDKADKELL 48 Query: 70 RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISE 129 I+HGV+ ++H L+ + + +L + ++L EL P VII+E Sbjct: 49 DAILHGVI--REHATLIEALTPSLDRPVDQLSPVERAVLLIATFELTHHVETPYRVIINE 106 Query: 130 YVCIAHDFFYGDEPKFINAVLDKVSRK 156 V +A F D K++N VLDK++ K Sbjct: 107 AVELAKTFGGSDGYKYVNGVLDKLAAK 133 >gi|149187999|ref|ZP_01866294.1| transcription antitermination protein NusB [Vibrio shilonii AK1] gi|148837987|gb|EDL54929.1| transcription antitermination protein NusB [Vibrio shilonii AK1] Length = 155 Score = 49.7 bits (117), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 43/153 (28%), Positives = 73/153 (47%), Gaps = 16/153 (10%) Query: 10 LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYL------- 62 +K + RR AR A+QA+Y I T E ++ E +F + + D E + Sbjct: 5 VKPAARRN-ARQFALQAIYSWQI----TKENVATVEE-QFLSGGKYDEEEHHAAEPALTA 58 Query: 63 -HVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSV 121 D+ +FR ++ GV +D + ++ LDM+ ++LR + E+ V Sbjct: 59 PETDVVYFRDLLTGVALNHTELDSKLRPFVSR--PMQDLDMMELALLRLAMYEMTSREDV 116 Query: 122 PVEVIISEYVCIAHDFFYGDEPKFINAVLDKVS 154 P +V+I+E + +A F D KF+N VLDK + Sbjct: 117 PYKVVINEAIELAKVFAAEDSHKFVNGVLDKAA 149 >gi|327458960|gb|EGF05308.1| N utilization substance protein B [Streptococcus sanguinis SK1057] Length = 143 Score = 49.7 bits (117), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 44/154 (28%), Positives = 74/154 (48%), Gaps = 27/154 (17%) Query: 9 DLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFC--------AD--TELDVE 58 D+ L RRG+ R A QAL ++ G +++ E RF AD TE D+ Sbjct: 3 DILLESRRGL-RQRAFQALMSLEYEG----DLV---EACRFAYSYDKDEGADKATEADIP 54 Query: 59 SVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIEC 118 + L+ ++ GV+ K +D I+ L + W+ RL ++ +ILR G+ E+ E Sbjct: 55 AFLLN--------LVSGVVQSKDDLDKKIAQHLKKGWTVDRLTLVEKNILRLGIFEITEF 106 Query: 119 HSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDK 152 + P V ++E + ++ F KFIN +L + Sbjct: 107 DT-PQLVAVNEAIELSKQFSDEKSSKFINGILSQ 139 >gi|293364851|ref|ZP_06611568.1| N utilization substance protein B [Streptococcus oralis ATCC 35037] gi|307703100|ref|ZP_07640047.1| transcription antitermination factor NusB [Streptococcus oralis ATCC 35037] gi|315612604|ref|ZP_07887517.1| transcription antitermination factor NusB [Streptococcus sanguinis ATCC 49296] gi|322374852|ref|ZP_08049366.1| transcription antitermination factor NusB [Streptococcus sp. C300] gi|331266955|ref|YP_004326585.1| transcription antitermination protein NusB [Streptococcus oralis Uo5] gi|291316301|gb|EFE56737.1| N utilization substance protein B [Streptococcus oralis ATCC 35037] gi|307623493|gb|EFO02483.1| transcription antitermination factor NusB [Streptococcus oralis ATCC 35037] gi|315315585|gb|EFU63624.1| transcription antitermination factor NusB [Streptococcus sanguinis ATCC 49296] gi|321280352|gb|EFX57391.1| transcription antitermination factor NusB [Streptococcus sp. C300] gi|326683627|emb|CBZ01245.1| transcription antitermination protein NusB [Streptococcus oralis Uo5] Length = 140 Score = 49.7 bits (117), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 34/117 (29%), Positives = 54/117 (46%), Gaps = 8/117 (6%) Query: 49 FCADTELDVESVYLH------VDLEWFRV-IIHGVMDRKQHIDLLISSCLTEKWSFSRLD 101 F D E Y H V L F ++ GV +K+ +D I+ L W+ RL Sbjct: 25 FGTDVETACRFAYTHDREDTDVQLPAFLTELVSGVQAKKEELDKQITQHLKAGWTIERLT 84 Query: 102 MILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEE 158 ++ ++LR GV E I P V ++E + +A DF +FIN +L + +E+ Sbjct: 85 LVERNLLRLGVFE-ITSFDTPQLVAVNEAIELAKDFSDQKSARFINGLLSQFVTEEQ 140 >gi|227495454|ref|ZP_03925770.1| conserved hypothetical protein [Actinomyces coleocanis DSM 15436] gi|226831001|gb|EEH63384.1| conserved hypothetical protein [Actinomyces coleocanis DSM 15436] Length = 180 Score = 49.7 bits (117), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 32/84 (38%), Positives = 42/84 (50%), Gaps = 1/84 (1%) Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131 II GV D ID L+ + T + +FSRL + +ILR E+I +VP I E V Sbjct: 59 IIEGVRDHLIEIDDLLDTHTTGR-TFSRLPAVDRAILRVATWEIIWNETVPDITAIDEAV 117 Query: 132 CIAHDFFYGDEPKFINAVLDKVSR 155 I D P +NA+LD V R Sbjct: 118 RITRKISTDDSPALVNAILDAVRR 141 >gi|225018827|ref|ZP_03708019.1| hypothetical protein CLOSTMETH_02777 [Clostridium methylpentosum DSM 5476] gi|224948387|gb|EEG29596.1| hypothetical protein CLOSTMETH_02777 [Clostridium methylpentosum DSM 5476] Length = 132 Score = 49.7 bits (117), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 28/84 (33%), Positives = 44/84 (52%), Gaps = 1/84 (1%) Query: 75 GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134 GV +D LIS LT KW+ +RL ++ +ILR V E++ V + I+E V +A Sbjct: 49 GVQQHISELDRLISEHLT-KWNITRLSKVILAILRLAVYEIVYVERVEAPIAINEAVELA 107 Query: 135 HDFFYGDEPKFINAVLDKVSRKEE 158 ++ ++ F+N VL R E Sbjct: 108 KEYATQEDAAFVNGVLGSFVRAAE 131 >gi|325104804|ref|YP_004274458.1| NusB antitermination factor [Pedobacter saltans DSM 12145] gi|324973652|gb|ADY52636.1| NusB antitermination factor [Pedobacter saltans DSM 12145] Length = 313 Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 24/62 (38%), Positives = 37/62 (59%) Query: 92 TEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLD 151 T+ W R+ M+ I++ + ELI S+PV+V I+EY+ IA +F FIN +LD Sbjct: 234 TKNWEADRIAMMDILIMKMALAELIYFSSIPVKVTINEYLEIAKEFSTPKSNVFINGILD 293 Query: 152 KV 153 K+ Sbjct: 294 KI 295 >gi|306828961|ref|ZP_07462153.1| transcription antitermination factor NusB [Streptococcus mitis ATCC 6249] gi|304429139|gb|EFM32227.1| transcription antitermination factor NusB [Streptococcus mitis ATCC 6249] Length = 140 Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 34/117 (29%), Positives = 54/117 (46%), Gaps = 8/117 (6%) Query: 49 FCADTELDVESVYLH------VDLEWFRV-IIHGVMDRKQHIDLLISSCLTEKWSFSRLD 101 F D E Y H V L F ++ GV +K+ +D I+ L W+ RL Sbjct: 25 FGTDVETACRFAYTHDREDTDVQLPAFLTELVSGVQAKKEELDKQITQHLKAGWTIERLT 84 Query: 102 MILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEE 158 ++ ++LR GV E I P V ++E + +A DF +FIN +L + +E+ Sbjct: 85 LVERNLLRLGVFE-ITSFDTPQLVAVNEAIELAKDFSDQKSARFINGLLGQFVTEEQ 140 >gi|259503557|ref|ZP_05746459.1| N utilization substance protein B [Lactobacillus antri DSM 16041] gi|259168470|gb|EEW52965.1| N utilization substance protein B [Lactobacillus antri DSM 16041] Length = 136 Score = 49.3 bits (116), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 28/93 (30%), Positives = 44/93 (47%) Query: 67 EWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVI 126 ++ R + GV +R+ +D IS L W+ RL ILR + EL VP V Sbjct: 44 DYVRQLATGVSERQADLDEQISGLLASDWTIDRLAKADLIILRLALYELQYVDEVPTAVA 103 Query: 127 ISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEI 159 I+E + +A +F KFIN L + ++ + Sbjct: 104 INEALELAKEFSSDQSRKFINGALGRFEKENNL 136 >gi|332307436|ref|YP_004435287.1| NusB antitermination factor [Glaciecola agarilytica 4H-3-7+YE-5] gi|332174765|gb|AEE24019.1| NusB antitermination factor [Glaciecola agarilytica 4H-3-7+YE-5] Length = 140 Score = 49.3 bits (116), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 43/143 (30%), Positives = 64/143 (44%), Gaps = 14/143 (9%) Query: 10 LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF 69 +K + RR AR AVQA+Y + ++ T D VD E+F Sbjct: 1 MKPAARRK-ARELAVQAVYSWQMSKNPLDQVELSIVTSNNMQD-----------VDTEYF 48 Query: 70 RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISE 129 ++ V+ + +D I L LD + +ILR EL+E VP +V+I+E Sbjct: 49 LELLRAVVRKTAELDAKIKPYLGR--LPEELDPVENAILRLATYELVERIDVPYKVVINE 106 Query: 130 YVCIAHDFFYGDEPKFINAVLDK 152 + +A F + KFIN VLDK Sbjct: 107 AIELAKSFGAEESHKFINGVLDK 129 >gi|191638628|ref|YP_001987794.1| transcription antitermination protein NusB [Lactobacillus casei BL23] gi|238693054|sp|B3WEY5|NUSB_LACCB RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|190712930|emb|CAQ66936.1| N utilization substance protein B homolog (Protein nusB) [Lactobacillus casei BL23] gi|327382670|gb|AEA54146.1| Transcription termination protein nusB [Lactobacillus casei LC2W] gi|327385864|gb|AEA57338.1| Transcription termination protein nusB [Lactobacillus casei BD-II] Length = 135 Score = 49.3 bits (116), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 29/105 (27%), Positives = 52/105 (49%), Gaps = 6/105 (5%) Query: 52 DTELDVESVYLHV---DLE---WFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILC 105 + E D ++VY V D E + ++ GV+ ++ +D ++ L + WS SRL Sbjct: 21 NPEADKDAVYAEVLPQDTEVPAYLTTLVEGVLSKQADLDAALTPQLKKGWSLSRLTKPDL 80 Query: 106 SILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVL 150 ILR G+ E+ ++P I+E + +A + KF+N +L Sbjct: 81 IILRLGLYEIRYEEAMPEAAAINEAINLAKRYSDDQSAKFVNGIL 125 >gi|293610510|ref|ZP_06692810.1| conserved hypothetical protein [Acinetobacter sp. SH024] gi|292826854|gb|EFF85219.1| conserved hypothetical protein [Acinetobacter sp. SH024] gi|325123924|gb|ADY83447.1| transcription termination, L factor (N utilization substance protein B) [Acinetobacter calcoaceticus PHEA-2] Length = 149 Score = 49.3 bits (116), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 30/98 (30%), Positives = 51/98 (52%), Gaps = 2/98 (2%) Query: 57 VESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELI 116 E+ VDL ++ ++ V+ + + +D L+ L + S LD + + LR G EL Sbjct: 42 AENAMHKVDLNYYHELLTQVIAQHEDLDALLIPVLDRE--LSALDGVELATLRLGAYELR 99 Query: 117 ECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVS 154 + VP V++ E + +A F D K+IN VLD++S Sbjct: 100 DHLEVPYRVVLDEAIELAKHFGGADSHKYINGVLDRLS 137 >gi|319786237|ref|YP_004145712.1| NusB antitermination factor [Pseudoxanthomonas suwonensis 11-1] gi|317464749|gb|ADV26481.1| NusB antitermination factor [Pseudoxanthomonas suwonensis 11-1] Length = 156 Score = 49.3 bits (116), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 36/142 (25%), Positives = 67/142 (47%), Gaps = 16/142 (11%) Query: 24 VQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHI 83 +QA+Y I G + ++I+++ E + DL +F ++ GV+ + + Sbjct: 24 LQAIYAWQISGGNAQQVIAQFAH-----------EQAHEIADLTYFEDLVTGVLSHRASL 72 Query: 84 DLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEP 143 D ++ L + +D I ++LR EL+ VP V+I+E + IA F Sbjct: 73 DEALAPHLDR--AVEEVDAIERAVLRLAAYELLHRVDVPYRVVINEAIEIAKRFGSEHGH 130 Query: 144 KFINAVLDKVS---RKEEIKRS 162 ++N VLD+ S R+ E++ S Sbjct: 131 TYVNGVLDRASAQWRQAEVQAS 152 >gi|294791792|ref|ZP_06756940.1| ribosomal RNA small subunit methyltransferase B [Veillonella sp. 6_1_27] gi|294457022|gb|EFG25384.1| ribosomal RNA small subunit methyltransferase B [Veillonella sp. 6_1_27] Length = 451 Score = 49.3 bits (116), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 41/150 (27%), Positives = 72/150 (48%), Gaps = 15/150 (10%) Query: 9 DLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEW 68 ++K + ++ I RL AV+AL +I+ G + EY +D +D + Sbjct: 3 EVKTNQQQNI-RLLAVKALSEINRNGAYANIKLQEYLQKYHLSD-----------LDRRF 50 Query: 69 FRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIIS 128 F +++GV+ RK ++D +I K +L ++ ILR G+ ++I VP ++ Sbjct: 51 FTELVYGVIRRKNYLDAIIVHF--AKRPLKKLSSMVVEILRLGIYQIIYMDKVPESAAVN 108 Query: 129 EYVCIAHDFFYGDEPKFINAVLDKVSRKEE 158 E V +A G F+NAVL V R+ + Sbjct: 109 ESVKLAKKLTRGLS-GFVNAVLRSVLRESD 137 >gi|282850140|ref|ZP_06259519.1| ribosomal RNA small subunit methyltransferase B [Veillonella parvula ATCC 17745] gi|294793653|ref|ZP_06758790.1| ribosomal RNA small subunit methyltransferase B [Veillonella sp. 3_1_44] gi|282579633|gb|EFB85037.1| ribosomal RNA small subunit methyltransferase B [Veillonella parvula ATCC 17745] gi|294455223|gb|EFG23595.1| ribosomal RNA small subunit methyltransferase B [Veillonella sp. 3_1_44] Length = 451 Score = 49.3 bits (116), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 41/150 (27%), Positives = 72/150 (48%), Gaps = 15/150 (10%) Query: 9 DLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEW 68 ++K + ++ I RL AV+AL +I+ G + EY +D +D + Sbjct: 3 EVKTNQQQNI-RLLAVKALSEINRNGAYANIKLQEYLQKYHLSD-----------LDRRF 50 Query: 69 FRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIIS 128 F +++GV+ RK ++D +I K +L ++ ILR G+ ++I VP ++ Sbjct: 51 FTELVYGVIRRKNYLDAIIVHF--AKRPLKKLSSMVVEILRLGIYQIIYMDKVPESAAVN 108 Query: 129 EYVCIAHDFFYGDEPKFINAVLDKVSRKEE 158 E V +A G F+NAVL V R+ + Sbjct: 109 ESVKLAKKLTRGLS-GFVNAVLRSVLRESD 137 >gi|226941305|ref|YP_002796379.1| transcription antitermination protein NusB [Laribacter hongkongensis HLHK9] gi|254772644|sp|C1DB31|NUSB_LARHH RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|226716232|gb|ACO75370.1| NusB [Laribacter hongkongensis HLHK9] Length = 165 Score = 49.3 bits (116), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 43/158 (27%), Positives = 67/158 (42%), Gaps = 26/158 (16%) Query: 10 LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF 69 +K RR AR AVQ +YQ + + I + L + D F Sbjct: 1 MKTPRRR--AREFAVQGIYQWQLNALTPATI-----------EKNLRDNEQFAKADEALF 47 Query: 70 RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRA----GVLELIECHSVPVEV 125 R +++GV++ I+ I+S F R + + RA EL + P+ V Sbjct: 48 RTLLYGVLNDPVRIESAIAS------HFERAPEDVSPVERAVLLMAAFELTQQAETPLAV 101 Query: 126 IISEYVCIAHDFFYGDEPKFINAVLDKVS---RKEEIK 160 II+E + IA F + +F+N VLDK + R EE + Sbjct: 102 IINEAIEIAKTFGGAEGHRFVNGVLDKYAAEVRPEEFE 139 >gi|227549190|ref|ZP_03979239.1| transcription antitermination protein NusB [Corynebacterium lipophiloflavum DSM 44291] gi|227078750|gb|EEI16713.1| transcription antitermination protein NusB [Corynebacterium lipophiloflavum DSM 44291] Length = 188 Score = 49.3 bits (116), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 28/100 (28%), Positives = 47/100 (47%) Query: 67 EWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVI 126 E+ R II GV ++ ID + L++ W RL + ILR E++ V + Sbjct: 54 EYTREIITGVAEKLDDIDDAVEQFLSQDWELGRLPAVDRQILRVAAWEILFNDDVAAPIA 113 Query: 127 ISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRSGCVS 166 IS + +A ++ P +I+AVLD V + + S + Sbjct: 114 ISNALGMAEEYAGHAAPPYIHAVLDDVVKTLPVPESAPPA 153 >gi|28895207|ref|NP_801557.1| transcription antitermination protein NusB [Streptococcus pyogenes SSI-1] gi|28810453|dbj|BAC63390.1| putative transcriptional terminator [Streptococcus pyogenes SSI-1] Length = 126 Score = 49.3 bits (116), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 25/81 (30%), Positives = 44/81 (54%) Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131 ++ GV + K+ +D LIS+ L + WS RL + ++LR G+ E+ P V ++E + Sbjct: 35 LVTGVNNHKEELDNLISTHLKKGWSLERLTLTDKTLLRLGLFEIKYFDETPDRVALNEII 94 Query: 132 CIAHDFFYGDEPKFINAVLDK 152 +A + KFIN +L + Sbjct: 95 EVAKKYSDETSAKFINGLLSQ 115 >gi|84394359|ref|ZP_00993080.1| transcription antitermination protein NusB [Vibrio splendidus 12B01] gi|86147433|ref|ZP_01065745.1| transcription antitermination protein NusB [Vibrio sp. MED222] gi|148976613|ref|ZP_01813300.1| transcription antitermination protein NusB [Vibrionales bacterium SWAT-3] gi|218710372|ref|YP_002417993.1| transcription antitermination protein NusB [Vibrio splendidus LGP32] gi|254772666|sp|B7VJA4|NUSB_VIBSL RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|84375018|gb|EAP91944.1| transcription antitermination protein NusB [Vibrio splendidus 12B01] gi|85834726|gb|EAQ52872.1| transcription antitermination protein NusB [Vibrio sp. MED222] gi|145963964|gb|EDK29222.1| transcription antitermination protein NusB [Vibrionales bacterium SWAT-3] gi|218323391|emb|CAV19568.1| N utilization substance protein B homolog [Vibrio splendidus LGP32] Length = 155 Score = 49.3 bits (116), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 43/153 (28%), Positives = 72/153 (47%), Gaps = 16/153 (10%) Query: 10 LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVES--------VY 61 +K + RR AR A+QA+Y I T E I+ E +F + + D E Sbjct: 5 VKPAARRN-ARQFALQAIYSWQI----TKENIATVEE-QFLSGGKYDEEEHHAAEPALAM 58 Query: 62 LHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSV 121 D+ +FR ++ GV +D + ++ LD++ ++LR + E+ V Sbjct: 59 PETDVAYFRDLLTGVALSHMELDSKLRPFVSR--PMQDLDLMELALLRLAMYEMTRREDV 116 Query: 122 PVEVIISEYVCIAHDFFYGDEPKFINAVLDKVS 154 P +V+I+E + +A F D KF+N VLDK + Sbjct: 117 PYKVVINEAIELAKVFAAEDSHKFVNGVLDKAA 149 >gi|33519701|ref|NP_878533.1| transcription antitermination protein NusB [Candidatus Blochmannia floridanus] gi|39931819|sp|Q7VRI1|NUSB_BLOFL RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|33504046|emb|CAD83307.1| transcription termination; L factor [Candidatus Blochmannia floridanus] Length = 138 Score = 49.3 bits (116), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 37/138 (26%), Positives = 67/138 (48%), Gaps = 13/138 (9%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 R ARL A+QALY + Y ++ + ++++ + ++ +F + G Sbjct: 6 RRFARLCALQALYAWQL----------SKNDYTMISNYVIKIQNIQ-NFNISYFLTLYIG 54 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135 V+ + ++ L+ L+ +D I S+L + EL +C VP +V+I+E + +A Sbjct: 55 VIHTIKELNTLMIPYLSR--GLKAIDYIEYSVLLIALFELTQCCDVPYKVVINEAIELAK 112 Query: 136 DFFYGDEPKFINAVLDKV 153 F KFIN VLDK+ Sbjct: 113 IFGSEKSHKFINGVLDKI 130 >gi|167586433|ref|ZP_02378821.1| NusB antitermination factor [Burkholderia ubonensis Bu] Length = 145 Score = 49.3 bits (116), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 43/147 (29%), Positives = 63/147 (42%), Gaps = 14/147 (9%) Query: 10 LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF 69 +K S RR +R A Q LYQ + S+ EI D +L Y D + Sbjct: 1 MKKSARR-QSRELATQGLYQWLLSNASSGEI-----------DAQLRGALGYDKADKDLL 48 Query: 70 RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISE 129 I+HGV+ + ++ CL +L I ++L EL P VII+E Sbjct: 49 DAILHGVIREHATLAEALTPCLDR--PIDQLSPIERAVLLIATFELTHHVETPYRVIINE 106 Query: 130 YVCIAHDFFYGDEPKFINAVLDKVSRK 156 V + F D K++N VLDK++ K Sbjct: 107 AVELTKTFGGSDGYKYVNGVLDKLAAK 133 >gi|194466519|ref|ZP_03072506.1| NusB antitermination factor [Lactobacillus reuteri 100-23] gi|194453555|gb|EDX42452.1| NusB antitermination factor [Lactobacillus reuteri 100-23] Length = 138 Score = 49.3 bits (116), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 31/117 (26%), Positives = 54/117 (46%), Gaps = 7/117 (5%) Query: 47 YRFCADTELDVESVY---LHVD----LEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSR 99 + +D E D+++VY H D + +++GV + + +D I+ L W+ +R Sbjct: 17 FALQSDPEADIQTVYEAIPHHDEKQIPPYLLTLVNGVREHQDQLDEQINDLLASGWTINR 76 Query: 100 LDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRK 156 L ILR + E+ +VP V I+E + + F KFIN L K ++ Sbjct: 77 LAKPDLVILRLALFEIQYAENVPTVVAINEALELTKTFSSDKSRKFINGALGKFEKQ 133 >gi|284048210|ref|YP_003398549.1| NusB antitermination factor [Acidaminococcus fermentans DSM 20731] gi|283952431|gb|ADB47234.1| NusB antitermination factor [Acidaminococcus fermentans DSM 20731] Length = 139 Score = 49.3 bits (116), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 39/139 (28%), Positives = 69/139 (49%), Gaps = 9/139 (6%) Query: 19 ARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMD 78 AR A+++L+ ++ + E ET R A+ E D++ DL + ++ GV + Sbjct: 6 ARTIAMRSLFALEFSPEQSPE-----ETVRTMAEEE-DIQDTR-KKDLAYALDLVKGVRE 58 Query: 79 RKQHIDLLISSCLTEKWSFSRLDMILCSILR-AGVLELIECHSVPVEVIISEYVCIAHDF 137 ++ +D ++ L KW+ R++ I ++LR AG VP V I+E V +A + Sbjct: 59 NQEALDGELNG-LDAKWTLKRMNGIDRNLLRIAGYEMFCSPEPVPPAVAINEAVELAKVY 117 Query: 138 FYGDEPKFINAVLDKVSRK 156 D P FIN +L + +K Sbjct: 118 GGDDSPAFINGLLGSLVKK 136 >gi|25028292|ref|NP_738346.1| transcription antitermination protein NusB [Corynebacterium efficiens YS-314] gi|32171659|sp|Q8FT35|NUSB_COREF RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|23493576|dbj|BAC18546.1| conserved hypothetical protein [Corynebacterium efficiens YS-314] Length = 188 Score = 49.3 bits (116), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 45/170 (26%), Positives = 71/170 (41%), Gaps = 12/170 (7%) Query: 3 IQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYL 62 + ++++ K R AR AV L++ + II + +T V+ V Sbjct: 1 MSESRQGYKRHGARYKARRRAVDILFEAESRDVDPVAIIDDRKTLSNA------VDPVVA 54 Query: 63 HVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVP 122 V E+ II+GV ID L+S + + W RL + ++LR E++ VP Sbjct: 55 PV-AEYTEAIINGVAVELDTIDDLLSEHIADTWLLERLPSVDRAVLRVACWEMLYNPDVP 113 Query: 123 VEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRK-----EEIKRSGCVSA 167 V + E V IA + +INA LD ++ K E G VS Sbjct: 114 VTTAVVEAVEIASQYSTDKAGAYINATLDNMASKVDELRERAANPGAVSG 163 >gi|145594393|ref|YP_001158690.1| transcription antitermination factor NusB [Salinispora tropica CNB-440] gi|189035903|sp|A4X612|NUSB_SALTO RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|145303730|gb|ABP54312.1| transcription antitermination factor NusB [Salinispora tropica CNB-440] Length = 136 Score = 49.3 bits (116), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 36/138 (26%), Positives = 63/138 (45%), Gaps = 15/138 (10%) Query: 19 ARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVD--LEWFRVIIHGV 76 AR A+ L++ D+ G E+++ Y VE + L + ++ GV Sbjct: 7 ARKRALDVLFEADLRGRPPVEVLAGY------------VERIEKPRPEHLGYAVGLVEGV 54 Query: 77 MDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHD 136 R +D LI+S E W+ R+ + ++ R V EL+ + V ISE V +A Sbjct: 55 AARLDRVDELIASY-AEGWTLDRMPTVDRNLARIAVYELLYVDEIDDAVAISEAVELARQ 113 Query: 137 FFYGDEPKFINAVLDKVS 154 D P+F+N +L +++ Sbjct: 114 MSTDDSPRFLNGLLGRIA 131 >gi|15895354|ref|NP_348703.1| transcription antitermination protein NusB [Clostridium acetobutylicum ATCC 824] gi|22095961|sp|Q97HC8|NUSB_CLOAB RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|15025072|gb|AAK80043.1|AE007710_13 Transcription termination factor NusB [Clostridium acetobutylicum ATCC 824] gi|325509499|gb|ADZ21135.1| transcription antitermination protein NusB [Clostridium acetobutylicum EA 2018] Length = 135 Score = 49.3 bits (116), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 34/136 (25%), Positives = 66/136 (48%), Gaps = 12/136 (8%) Query: 15 RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74 R +R A++ L++I I S ++ I Y+ + E++ ++D E+ I+ Sbjct: 2 NRKKSREVAMKLLFEISINKNSISDTIEHYKE-----NNEIE------NLDFEYIERILR 50 Query: 75 GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134 G+ + ++ID I ++KW SR+ I +ILR E+ +P +V +E V +A Sbjct: 51 GIDENMEYIDSKIEES-SKKWKISRISKINITILRMAAYEIFFEKDIPCKVSANEAVELA 109 Query: 135 HDFFYGDEPKFINAVL 150 + + F+N V+ Sbjct: 110 KSYAEENSFSFVNGVI 125 >gi|256832560|ref|YP_003161287.1| NusB antitermination factor [Jonesia denitrificans DSM 20603] gi|256686091|gb|ACV08984.1| NusB antitermination factor [Jonesia denitrificans DSM 20603] Length = 138 Score = 49.3 bits (116), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 39/138 (28%), Positives = 61/138 (44%), Gaps = 12/138 (8%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 R AR AV LY+ D S +++ AD + VDL + G Sbjct: 4 RSKARKRAVNILYEADQRNLSAAQVLDIR-----LADPGVPSALPQYAVDL------VEG 52 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135 V+ ++ ID ++ + + W R+ + +ILR G EL+ VP V I E V +A Sbjct: 53 VILHRERIDEILETY-SRGWPLRRMPAVDRAILRLGTWELLYNDDVPDIVAIDEAVDLAR 111 Query: 136 DFFYGDEPKFINAVLDKV 153 + D P F+N +L +V Sbjct: 112 ELSTEDSPSFVNGLLGRV 129 >gi|228475963|ref|ZP_04060671.1| transcription antitermination factor NusB [Staphylococcus hominis SK119] gi|314936353|ref|ZP_07843700.1| transcription antitermination factor NusB [Staphylococcus hominis subsp. hominis C80] gi|228269786|gb|EEK11266.1| transcription antitermination factor NusB [Staphylococcus hominis SK119] gi|313654972|gb|EFS18717.1| transcription antitermination factor NusB [Staphylococcus hominis subsp. hominis C80] Length = 128 Score = 48.9 bits (115), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 43/138 (31%), Positives = 62/138 (44%), Gaps = 13/138 (9%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 R +R A Q L+Q+++ T I+E F D Y +D E+ ++ G Sbjct: 3 RKESRKQAFQTLFQLEMKNTDLT--INE--AINFIKDD-------YPDLDFEFIHWLVTG 51 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135 V D +Q +D I L + WS RL ILR EL+ + P +VII+E V + Sbjct: 52 VKDHEQVLDQSIEPKLKD-WSIQRLLKTDRIILRMATFELLHSDTPP-KVIINEAVELTK 109 Query: 136 DFFYGDEPKFINAVLDKV 153 F KFIN VL + Sbjct: 110 QFSDEGHYKFINGVLSNI 127 >gi|313889626|ref|ZP_07823269.1| transcription antitermination factor NusB [Streptococcus pseudoporcinus SPIN 20026] gi|313121923|gb|EFR45019.1| transcription antitermination factor NusB [Streptococcus pseudoporcinus SPIN 20026] Length = 143 Score = 48.9 bits (115), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 41/142 (28%), Positives = 68/142 (47%), Gaps = 16/142 (11%) Query: 13 SHRRGIARLAAVQALYQIDIIG--CSTTEIISEYETYRFCADTELDVESVYLHVDLEWFR 70 + RR + R A QAL+ ++ G ++ +Y+ D LDV + L Sbjct: 7 NSRRDL-RERAFQALFNMEHGGDFLESSRFAYDYDKVS-DQDHPLDVPAFLL-------- 56 Query: 71 VIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEY 130 +++GV + K+ +D +I L + WS RL + ++LR G+ E+ P V ++E Sbjct: 57 TLVNGVNNHKEELDAIIKENLKKGWSIERLTLSDRTMLRLGLYEIKYFDETPDRVALNEI 116 Query: 131 VCIAHDFFYGDE--PKFINAVL 150 + IA Y DE KFIN +L Sbjct: 117 IEIAKK--YSDETSAKFINGLL 136 >gi|163816787|ref|ZP_02208150.1| hypothetical protein COPEUT_02977 [Coprococcus eutactus ATCC 27759] gi|158448044|gb|EDP25039.1| hypothetical protein COPEUT_02977 [Coprococcus eutactus ATCC 27759] Length = 153 Score = 48.9 bits (115), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 31/94 (32%), Positives = 51/94 (54%), Gaps = 1/94 (1%) Query: 65 DLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVE 124 D E+ + ++ K ID IS ++E W R+ +ILR GV E++ ++P + Sbjct: 55 DKEYITDKVMDILAHKDAIDNTISE-ISEGWKLPRIGKEELAILRLGVYEVVYDETIPEK 113 Query: 125 VIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEE 158 V I+E V +A + KF+NA+L K+ +KEE Sbjct: 114 VAINEAVELAKKYCDVSASKFVNALLAKLVKKEE 147 >gi|160938277|ref|ZP_02085632.1| hypothetical protein CLOBOL_03173 [Clostridium bolteae ATCC BAA-613] gi|158438650|gb|EDP16407.1| hypothetical protein CLOBOL_03173 [Clostridium bolteae ATCC BAA-613] Length = 272 Score = 48.9 bits (115), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 24/90 (26%), Positives = 44/90 (48%), Gaps = 1/90 (1%) Query: 63 HVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVP 122 D E+ + +M++ ID ++ W R+ + +ILR + E++ ++P Sbjct: 107 EADSEYLQARTANIMEKIPEIDEKLNQAAA-GWKTKRMGKVELTILRLALYEMLHDDAIP 165 Query: 123 VEVIISEYVCIAHDFFYGDEPKFINAVLDK 152 +V I+E V +A F D P F+N +L K Sbjct: 166 EKVSINEAVELAKKFGGNDSPSFVNGILAK 195 >gi|86133163|ref|ZP_01051745.1| NusB family protein [Polaribacter sp. MED152] gi|85820026|gb|EAQ41173.1| NusB family protein [Polaribacter sp. MED152] Length = 312 Score = 48.9 bits (115), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 23/64 (35%), Positives = 35/64 (54%) Query: 92 TEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLD 151 T W R+ I +++ + E + S+PV V I+EY+ IA D+ FIN VLD Sbjct: 233 TPNWETDRIADIDMILIKMAITEFVNFPSIPVRVTINEYIEIAKDYSTTKSSYFINGVLD 292 Query: 152 KVSR 155 K+S+ Sbjct: 293 KISK 296 >gi|251792444|ref|YP_003007170.1| transcription antitermination protein NusB [Aggregatibacter aphrophilus NJ8700] gi|247533837|gb|ACS97083.1| transcription antitermination factor NusB [Aggregatibacter aphrophilus NJ8700] Length = 141 Score = 48.9 bits (115), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 43/144 (29%), Positives = 70/144 (48%), Gaps = 14/144 (9%) Query: 11 KLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFR 70 K+S RR AR AVQALY I ++ E++ F + +++ VD +FR Sbjct: 7 KISPRRR-ARECAVQALYSW-AISQNSPELVE----LNFMTEQDMN------GVDKPYFR 54 Query: 71 VIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEY 130 + ++ ++ + L + LD I +ILR V EL VP +V+I+E Sbjct: 55 KLFRQTVENVDAVEHTMQGYLDR--TLDELDPIEKAILRLAVYELQFEADVPYKVVINEA 112 Query: 131 VCIAHDFFYGDEPKFINAVLDKVS 154 + +A F + K+IN VLDK++ Sbjct: 113 IEVAKVFGADESHKYINGVLDKIA 136 >gi|171912809|ref|ZP_02928279.1| NusB antitermination factor [Verrucomicrobium spinosum DSM 4136] Length = 145 Score = 48.9 bits (115), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 41/143 (28%), Positives = 69/143 (48%), Gaps = 15/143 (10%) Query: 15 RRGIARLAAVQALYQIDIIG-CSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVII 73 +R R AA+Q L+ D+ G T+ + + + D ES ++ Sbjct: 5 KRREGRQAAMQFLFAHDVHGKVEDTDRAAFWTLHSATQDIRAHAES------------LV 52 Query: 74 HGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCI 133 G+ + ID I++ L E + F RL ++ +ILR V E++ VPV V+I+E V I Sbjct: 53 TGIKTHQVQIDDCIAATL-ENFRFERLGVVDRNILRLAVYEMLHT-EVPVPVVINEAVEI 110 Query: 134 AHDFFYGDEPKFINAVLDKVSRK 156 + F F+N VLDK++++ Sbjct: 111 SKVFGDTQTRAFVNGVLDKIAKR 133 >gi|308233793|ref|ZP_07664530.1| NusB antitermination factor [Atopobium vaginae DSM 15829] gi|328943758|ref|ZP_08241223.1| transcription antitermination factor NusB [Atopobium vaginae DSM 15829] gi|327491727|gb|EGF23501.1| transcription antitermination factor NusB [Atopobium vaginae DSM 15829] Length = 239 Score = 48.9 bits (115), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 37/146 (25%), Positives = 71/146 (48%), Gaps = 14/146 (9%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 R +AR A+Q ++Q + ++++ T ++ LD ++ + + G Sbjct: 13 RTLARSQALQLMFQAESRNMQVCDVLA---TNYLLSEGPLD----------DFGKRLALG 59 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135 + + +D LIS +T W+ +RL + +ILR + E+I+ V + V I+E V +A Sbjct: 60 TDELRDKLDALISRVIT-NWNLNRLLSVDRNILRLALYEMIKVDDVDIAVTINESVNLAK 118 Query: 136 DFFYGDEPKFINAVLDKVSRKEEIKR 161 + + F+N VL +V+R E R Sbjct: 119 AYGTDESSHFVNGVLGQVARMMENGR 144 >gi|197283996|ref|YP_002149868.1| transcription antitermination protein NusB [Proteus mirabilis HI4320] gi|227358135|ref|ZP_03842476.1| N utilization substance protein B [Proteus mirabilis ATCC 29906] gi|238693150|sp|B4EU20|NUSB_PROMH RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|194681483|emb|CAR40329.1| N utilization substance protein B [Proteus mirabilis HI4320] gi|227161471|gb|EEI46508.1| N utilization substance protein B [Proteus mirabilis ATCC 29906] Length = 137 Score = 48.9 bits (115), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 38/132 (28%), Positives = 63/132 (47%), Gaps = 13/132 (9%) Query: 23 AVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQH 82 AVQA+Y + G ++ E+ + + DT+ VD+ +FR ++ GV Sbjct: 13 AVQAIYSWQLSGNDIADVELEFLSEQ---DTQ--------GVDIAYFRELLVGVAINAAR 61 Query: 83 IDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDE 142 +D + L+ + L + +ILR + EL VP +V I+E + +A F D Sbjct: 62 LDKAMEPYLSRQ--LEELGQVEKAILRLAMFELSFREDVPYKVAINEAIELAKVFGADDS 119 Query: 143 PKFINAVLDKVS 154 KF+N VLDK + Sbjct: 120 HKFVNGVLDKAA 131 >gi|187935150|ref|YP_001886595.1| transcription antitermination factor NusB [Clostridium botulinum B str. Eklund 17B] gi|238691670|sp|B2TRN6|NUSB_CLOBB RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|187723303|gb|ACD24524.1| transcription antitermination factor NusB [Clostridium botulinum B str. Eklund 17B] Length = 133 Score = 48.9 bits (115), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 37/142 (26%), Positives = 66/142 (46%), Gaps = 10/142 (7%) Query: 15 RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74 R ++R A++ L+ + + + E + F + E D++ +D+ + + I+ Sbjct: 2 NRKLSREKAMELLFGMTLNTDNCEETLE-----NFIDNYESDIK----ELDITYIKRILI 52 Query: 75 GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134 GV + K +ID IS L W R+ + ILR V EL+ +P V I+E + I Sbjct: 53 GVENNKDNIDESISKNLC-NWKIDRISKVNLCILRLAVYELLHDEEIPNRVAINEALEIT 111 Query: 135 HDFFYGDEPKFINAVLDKVSRK 156 + F+N VLD + +K Sbjct: 112 KKYSDEKSVSFVNGVLDNILKK 133 >gi|313681443|ref|YP_004059181.1| nusb antitermination factor [Sulfuricurvum kujiense DSM 16994] gi|313154303|gb|ADR32981.1| NusB antitermination factor [Sulfuricurvum kujiense DSM 16994] Length = 132 Score = 48.9 bits (115), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 45/144 (31%), Positives = 62/144 (43%), Gaps = 21/144 (14%) Query: 16 RGIARLAAVQALYQIDI----IGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71 R AR+A V LY D+ I + EI+ E + D LD Sbjct: 4 RHQARMAVVSLLYAYDLGNQTIADFSDEILEEKKIRNKQRDFALD--------------- 48 Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131 + GV + ID I L + W F RL I + LR G E++ + VII+E + Sbjct: 49 LFKGVTEHLSEIDEAIVKHLKD-WDFDRLGSIERATLRLGGYEIM-FGELDSAVIINEAI 106 Query: 132 CIAHDFFYGDEPKFINAVLDKVSR 155 +A F PKFIN VLD +S+ Sbjct: 107 EVAKAFGSEQSPKFINGVLDAISK 130 >gi|226329105|ref|ZP_03804623.1| hypothetical protein PROPEN_03008 [Proteus penneri ATCC 35198] gi|225202291|gb|EEG84645.1| hypothetical protein PROPEN_03008 [Proteus penneri ATCC 35198] Length = 137 Score = 48.9 bits (115), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 38/132 (28%), Positives = 63/132 (47%), Gaps = 13/132 (9%) Query: 23 AVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQH 82 AVQA+Y + G ++ E+ + + DT+ VD+ +FR ++ GV Sbjct: 13 AVQAIYSWQLSGNDIADVELEFLSEQ---DTQ--------GVDIAYFRELLVGVAINATR 61 Query: 83 IDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDE 142 +D + L+ + L + +ILR + EL VP +V I+E + +A F D Sbjct: 62 LDKAMEPYLSRQ--LEELGQVEKAILRLAMFELSFREDVPYKVAINEAIELAKVFGADDS 119 Query: 143 PKFINAVLDKVS 154 KF+N VLDK + Sbjct: 120 HKFVNGVLDKAA 131 >gi|295132726|ref|YP_003583402.1| antitermination protein NusB [Zunongwangia profunda SM-A87] gi|294980741|gb|ADF51206.1| antitermination protein NusB [Zunongwangia profunda SM-A87] Length = 303 Score = 48.9 bits (115), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 26/77 (33%), Positives = 43/77 (55%), Gaps = 2/77 (2%) Query: 92 TEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLD 151 T W R+ I +L+ + E +E S+PV+V I+EY+ I+ ++ FIN +LD Sbjct: 224 TPNWDKDRIAEIDTVLLKMAICEFLEFPSIPVKVTINEYLEISKEYSTPKSSIFINGILD 283 Query: 152 KVSRKEEIKRSGCVSAI 168 K+S+ E K G ++ I Sbjct: 284 KLSK--EYKTDGKLNKI 298 >gi|325525004|gb|EGD02919.1| transcription antitermination protein NusB [Burkholderia sp. TJI49] Length = 145 Score = 48.9 bits (115), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 43/147 (29%), Positives = 65/147 (44%), Gaps = 14/147 (9%) Query: 10 LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF 69 +K S RR +R A Q LYQ + S+ EI D +L Y D Sbjct: 1 MKKSARR-QSRELATQGLYQWLLSNASSGEI-----------DAQLRGALGYDKADKALL 48 Query: 70 RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISE 129 I+HGV+ ++H L+ + + +L + ++L EL P VII+E Sbjct: 49 DAILHGVI--REHATLVEALTPSLDRPIDQLSPVERAVLLIATFELTHHVETPYRVIINE 106 Query: 130 YVCIAHDFFYGDEPKFINAVLDKVSRK 156 V +A F D K++N VLDK++ K Sbjct: 107 AVELAKTFGGSDGYKYVNGVLDKLAAK 133 >gi|73662539|ref|YP_301320.1| transcription antitermination protein NusB [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] gi|119390831|sp|Q49XW9|NUSB_STAS1 RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|72495054|dbj|BAE18375.1| putative antitermination protein [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] Length = 128 Score = 48.9 bits (115), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 44/140 (31%), Positives = 64/140 (45%), Gaps = 17/140 (12%) Query: 16 RGIARLAAVQALYQIDIIGCSTT--EIISEYETYRFCADTELDVESVYLHVDLEWFRVII 73 R +R A Q L+Q+++ T E IS F D D+E E+ ++ Sbjct: 3 RKESRTQAFQTLFQLEMKNSDLTIEEAIS------FIKDDNPDLE-------FEFISWLV 49 Query: 74 HGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCI 133 GV D + +D I L + W+ +RL ILR E++ S P +VII+E V + Sbjct: 50 TGVKDHEVVLDEKIQPHLKD-WTLARLLKSDRIILRMSTFEMLHS-STPQKVIINEAVEL 107 Query: 134 AHDFFYGDEPKFINAVLDKV 153 A F D KFIN VL + Sbjct: 108 AKQFSDDDHYKFINGVLSNI 127 >gi|125717317|ref|YP_001034450.1| transcription antitermination protein NusB [Streptococcus sanguinis SK36] gi|125497234|gb|ABN43900.1| Nitrogen utilization substance protein B, putative [Streptococcus sanguinis SK36] Length = 148 Score = 48.9 bits (115), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 42/149 (28%), Positives = 71/149 (47%), Gaps = 17/149 (11%) Query: 9 DLKLSHRRGIARLAAVQAL----YQIDII-GCSTTEIISEYETYRFCADTELDVESVYLH 63 D+ L RRG+ R A QAL Y+ D++ C + E A E D+ + L+ Sbjct: 8 DILLESRRGL-RQRAFQALMSLEYEGDLVEACRFAYSYDKDEGADKAA--EADIPAFLLN 64 Query: 64 VDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPV 123 ++ GV+ K +D I+ L + W+ RL ++ +ILR G+ E+ E + P Sbjct: 65 --------LVSGVVQSKDDLDKKIAQHLKKGWTVDRLTLVEKNILRLGIFEITEFDT-PQ 115 Query: 124 EVIISEYVCIAHDFFYGDEPKFINAVLDK 152 V ++E + ++ F KFIN +L + Sbjct: 116 LVAVNEAIELSKQFSDEKSSKFINGILSQ 144 >gi|238019375|ref|ZP_04599801.1| hypothetical protein VEIDISOL_01239 [Veillonella dispar ATCC 17748] gi|237864074|gb|EEP65364.1| hypothetical protein VEIDISOL_01239 [Veillonella dispar ATCC 17748] Length = 451 Score = 48.9 bits (115), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 40/146 (27%), Positives = 68/146 (46%), Gaps = 14/146 (9%) Query: 13 SHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVI 72 S+ + RL AV+AL I+ G + EY +D +D +F + Sbjct: 6 SYEQQNIRLLAVKALSDINRNGAYANIKLQEYLQKYHLSD-----------LDRRFFTEL 54 Query: 73 IHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVC 132 ++GV+ RK ++D +I K +L ++ ILR G+ ++I VP ++E V Sbjct: 55 VYGVIRRKNYLDAIIIHF--AKRPLKKLSSMVVEILRLGIYQIIYMDKVPESAAVNESVK 112 Query: 133 IAHDFFYGDEPKFINAVLDKVSRKEE 158 +A + G F+NAVL V R+ + Sbjct: 113 LAKNLTRGLS-GFVNAVLRSVLRESD 137 >gi|169350501|ref|ZP_02867439.1| hypothetical protein CLOSPI_01269 [Clostridium spiroforme DSM 1552] gi|169292821|gb|EDS74954.1| hypothetical protein CLOSPI_01269 [Clostridium spiroforme DSM 1552] Length = 134 Score = 48.9 bits (115), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 37/142 (26%), Positives = 70/142 (49%), Gaps = 10/142 (7%) Query: 13 SHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVI 72 +R+ + R AV A+YQ +I +T E+ + ++ + A+ + D ++ ++ Sbjct: 3 KYRKKLIREKAVIAIYQKLLIDITTEEVYNYLDSDKELANDK---------DDYDYCVML 53 Query: 73 IHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVC 132 I + + + ++ L + WS RL + +IL G EL+E EVII+E V Sbjct: 54 ISSIANNLEKYKAEVAKHLKKGWSLERLSKMELAILLVGCYELLETDQSK-EVIINEAVE 112 Query: 133 IAHDFFYGDEPKFINAVLDKVS 154 ++ + D KF+N VL+K+ Sbjct: 113 LSKKYCDDDVYKFVNGVLNKIK 134 >gi|310642666|ref|YP_003947424.1| transcription antitermination factor nusb [Paenibacillus polymyxa SC2] gi|309247616|gb|ADO57183.1| Transcription antitermination factor NusB [Paenibacillus polymyxa SC2] Length = 149 Score = 48.9 bits (115), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 27/81 (33%), Positives = 44/81 (54%), Gaps = 1/81 (1%) Query: 73 IHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVC 132 + G + K+ ID L++ L + W SRL + ILR V E+I VP +V ++E + Sbjct: 59 VRGTWEHKEAIDGLLADYL-KGWQISRLSRVDRQILRLAVYEMIFREDVPAKVAVNEAIE 117 Query: 133 IAHDFFYGDEPKFINAVLDKV 153 ++ F + KF+N VL +V Sbjct: 118 LSKHFGTEESGKFVNGVLGRV 138 >gi|229823019|ref|ZP_04449089.1| hypothetical protein GCWU000282_00312 [Catonella morbi ATCC 51271] gi|229787832|gb|EEP23946.1| hypothetical protein GCWU000282_00312 [Catonella morbi ATCC 51271] Length = 154 Score = 48.9 bits (115), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 41/142 (28%), Positives = 65/142 (45%), Gaps = 8/142 (5%) Query: 11 KLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFR 70 K+S+R + R AVQ ++Q+ +S + F + D E+ + D + Sbjct: 10 KMSNRHQV-REKAVQTIFQL----IRPQVPVSLDQACAFALEAGNDPEAGFEGSD-AYLD 63 Query: 71 VIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLEL--IECHSVPVEVIIS 128 ++ GV + +D IS L E W+ RL I +ILR EL + VP +V ++ Sbjct: 64 RLVQGVNQTAEELDQRISHYLAEDWTLDRLARIDLAILRVAFYELLYVSEDEVPSKVAVN 123 Query: 129 EYVCIAHDFFYGDEPKFINAVL 150 E V +A F +FIN VL Sbjct: 124 EAVELAKTFSDDKSKQFINGVL 145 >gi|332288213|ref|YP_004419065.1| transcription antitermination protein NusB [Gallibacterium anatis UMN179] gi|330431109|gb|AEC16168.1| transcription antitermination protein NusB [Gallibacterium anatis UMN179] Length = 145 Score = 48.5 bits (114), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 45/152 (29%), Positives = 69/152 (45%), Gaps = 18/152 (11%) Query: 7 KKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDV--ESVYLHV 64 K + K S RR AR VQALY I S I ELD+ Sbjct: 6 KTEKKPSKRRR-ARECTVQALYSWFISKNSPESI-------------ELDLVTNDETKGA 51 Query: 65 DLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVE 124 D+ +FR + +G ++ +++ +S L K L I +IL EL +P + Sbjct: 52 DVVYFRKLFNGTVNNLDNLEQEYASFLDRK--IEELGTIERAILDCATFELKYVDDIPYK 109 Query: 125 VIISEYVCIAHDFFYGDEPKFINAVLDKVSRK 156 V+I+E + +A F D K+IN++LDK++ K Sbjct: 110 VVINEAIEVAKTFGASDSHKYINSILDKLAPK 141 >gi|311742352|ref|ZP_07716161.1| transcription antitermination factor NusB [Aeromicrobium marinum DSM 15272] gi|311313980|gb|EFQ83888.1| transcription antitermination factor NusB [Aeromicrobium marinum DSM 15272] Length = 136 Score = 48.5 bits (114), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 25/82 (30%), Positives = 42/82 (51%), Gaps = 1/82 (1%) Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131 ++ GV + ID +IS W+ R+ + ++LR G+ E++ VP V +SE V Sbjct: 47 LVEGVAGTRDRIDAIISEH-AHGWTLDRMPAVDRNLLRLGIYEILYVDDVPDAVAVSEAV 105 Query: 132 CIAHDFFYGDEPKFINAVLDKV 153 +A + + F+N VL KV Sbjct: 106 SLAQELSTDESASFVNGVLSKV 127 >gi|299139121|ref|ZP_07032297.1| NusB antitermination factor [Acidobacterium sp. MP5ACTX8] gi|298598801|gb|EFI54963.1| NusB antitermination factor [Acidobacterium sp. MP5ACTX8] Length = 141 Score = 48.5 bits (114), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 40/142 (28%), Positives = 64/142 (45%), Gaps = 13/142 (9%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTE-LDVESVYLHVDLEWFRVIIH 74 R +R A+Q L+Q D+ G E + E F A E +D E+ DL Sbjct: 4 RRKSRELAMQMLFQGDL-GKQKPEEVEEL----FWASREDVDDETRGFADDLHRL----- 53 Query: 75 GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134 R+ +D LI + W R+ ++ ++LR V E++ P VII+E + IA Sbjct: 54 -ATQREDEVDALIQKH-AQNWRLERMPVVDRNLLRTAVAEMVGYPKTPAAVIINETLEIA 111 Query: 135 HDFFYGDEPKFINAVLDKVSRK 156 + + F+N VLD + R+ Sbjct: 112 RRYAAPESIHFLNGVLDAIGRE 133 >gi|226366336|ref|YP_002784119.1| transcription antitermination protein NusB [Rhodococcus opacus B4] gi|254772652|sp|C1B4I5|NUSB_RHOOB RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|226244826|dbj|BAH55174.1| transcription antitermination protein NusB [Rhodococcus opacus B4] Length = 169 Score = 48.5 bits (114), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 27/82 (32%), Positives = 42/82 (51%), Gaps = 1/82 (1%) Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131 ++ GV + +D +ISS L + W+ RL + +ILR V EL VP V + E V Sbjct: 59 VVTGVAENLDRLDEVISSHL-QDWTLERLPAVDRAILRIAVWELFHATDVPPVVAVDEAV 117 Query: 132 CIAHDFFYGDEPKFINAVLDKV 153 +A + P F+N +L +V Sbjct: 118 ELAKQLSTDESPGFVNGILGQV 139 >gi|254253011|ref|ZP_04946329.1| Transcription termination factor [Burkholderia dolosa AUO158] gi|124895620|gb|EAY69500.1| Transcription termination factor [Burkholderia dolosa AUO158] Length = 145 Score = 48.5 bits (114), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 42/147 (28%), Positives = 65/147 (44%), Gaps = 14/147 (9%) Query: 10 LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF 69 +K S RR +R A Q LYQ + S+ EI D +L Y D + Sbjct: 1 MKKSARRQ-SRELATQGLYQWLLSNASSGEI-----------DAQLRGALGYDKADKDLL 48 Query: 70 RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISE 129 I+HGV+ ++H L+ + +L + ++L EL P V+I+E Sbjct: 49 DAILHGVI--REHATLVEAIAPALDRPIDQLSPVERAVLLIATFELTHHIETPYRVVINE 106 Query: 130 YVCIAHDFFYGDEPKFINAVLDKVSRK 156 V +A F D K++N VLDK++ K Sbjct: 107 AVELAKTFGGSDGYKYVNGVLDKLAAK 133 >gi|282856378|ref|ZP_06265657.1| transcription antitermination factor NusB [Pyramidobacter piscolens W5455] gi|282585749|gb|EFB91038.1| transcription antitermination factor NusB [Pyramidobacter piscolens W5455] Length = 174 Score = 48.5 bits (114), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 34/118 (28%), Positives = 58/118 (49%), Gaps = 4/118 (3%) Query: 39 EIISEYETYRFCADTELDVESVYLHVDL-EWFRVIIHGVMDRK--QHIDLLISSCLTEKW 95 E ++E +T+ D ESV V ++ R H + R+ ID LI + TE W Sbjct: 51 EAVAENGAEAESGETDADEESVLTRVPFADYRRSCEHACLVRRALPEIDALIETYSTE-W 109 Query: 96 SFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKV 153 R+ ++ +I+R + E + VP V +SE V +A ++ D +F+N VL ++ Sbjct: 110 KTERMSLVDRTIIRLALYEAVIAKKVPPGVALSEAVRLAKEYGSDDSSRFVNGVLARI 167 >gi|332970403|gb|EGK09395.1| transcription antitermination factor NusB [Kingella kingae ATCC 23330] Length = 151 Score = 48.5 bits (114), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 49/164 (29%), Positives = 74/164 (45%), Gaps = 25/164 (15%) Query: 6 NKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIIS---EYETYRFCADTELDVESVY- 61 N+ K S RR AR AVQALYQ+ + E+ S E+ ++ AD EL E + Sbjct: 6 NQPKTKKSPRRR-AREFAVQALYQVAMNQSIAAEVASHMREHGDFK-NADNELFTELFFG 63 Query: 62 LHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSV 121 H + + I +DR ++ ++ I +IL EL Sbjct: 64 AHQNQREYMQHIRPHLDRDENA----------------VNPIERAILLLATHELAAMPQT 107 Query: 122 PVEVIISEYVCIAHDFFYGDEPKFINAVLDKVS---RKEEIKRS 162 P V+I+E V + F D KFIN++LDK++ R +E KR+ Sbjct: 108 PYPVVINEAVELTKTFGGTDSHKFINSILDKLAGELRPDEPKRN 151 >gi|227534863|ref|ZP_03964912.1| transcription antitermination protein NusB [Lactobacillus paracasei subsp. paracasei ATCC 25302] gi|227187619|gb|EEI67686.1| transcription antitermination protein NusB [Lactobacillus paracasei subsp. paracasei ATCC 25302] Length = 139 Score = 48.5 bits (114), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 28/105 (26%), Positives = 52/105 (49%), Gaps = 6/105 (5%) Query: 52 DTELDVESVYLHV---DLE---WFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILC 105 + E D ++VY V D E + ++ GV+ ++ +D ++ L + W+ SRL Sbjct: 25 NPEADKDAVYAEVLPQDTEVPAYLTTLVEGVLSKQADLDAALTPQLKKGWTLSRLTKPDL 84 Query: 106 SILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVL 150 ILR G+ E+ ++P I+E + +A + KF+N +L Sbjct: 85 IILRLGLYEIRYEEAMPEAAAINEAINLAKRYSDDQSAKFVNGIL 129 >gi|332523180|ref|ZP_08399432.1| transcription antitermination factor NusB [Streptococcus porcinus str. Jelinkova 176] gi|332314444|gb|EGJ27429.1| transcription antitermination factor NusB [Streptococcus porcinus str. Jelinkova 176] Length = 143 Score = 48.5 bits (114), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 40/142 (28%), Positives = 68/142 (47%), Gaps = 16/142 (11%) Query: 13 SHRRGIARLAAVQALYQIDIIG--CSTTEIISEYETYRFCADTELDVESVYLHVDLEWFR 70 + RR + R A QAL+ ++ G +++ +Y+ D LD+ + L Sbjct: 7 NSRRDL-RERAFQALFNMEHGGDFLESSQFAYDYDKVS-DQDHPLDIPAFLL-------- 56 Query: 71 VIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEY 130 +++GV + K +D +I L + WS RL + ++LR G+ E+ P V ++E Sbjct: 57 TLVNGVNNHKDELDAIIKENLKKGWSIERLTLSDRTMLRLGLYEIKYFDETPDRVALNEI 116 Query: 131 VCIAHDFFYGDE--PKFINAVL 150 + IA Y DE KFIN +L Sbjct: 117 IEIAKK--YSDETSAKFINGLL 136 >gi|170017709|ref|YP_001728628.1| transcription termination factor [Leuconostoc citreum KM20] gi|169804566|gb|ACA83184.1| Transcription termination factor [Leuconostoc citreum KM20] Length = 140 Score = 48.5 bits (114), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 28/92 (30%), Positives = 48/92 (52%), Gaps = 1/92 (1%) Query: 67 EWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVI 126 ++ +++G++ K +D IS L W+ +R++ ILR + EL + VP +V Sbjct: 44 DYLPRLVNGILGNKIDLDAQISEHLAAGWAIARINKADLVILRLAIYELSQ-QLVPYKVA 102 Query: 127 ISEYVCIAHDFFYGDEPKFINAVLDKVSRKEE 158 I E + +A F D+ KF+N VL + K E Sbjct: 103 IDEALILAKTFADEDDRKFVNGVLKNFAPKVE 134 >gi|257893505|ref|ZP_05673158.1| transcription antiterminator NusB [Enterococcus faecium 1,231,408] gi|257829884|gb|EEV56491.1| transcription antiterminator NusB [Enterococcus faecium 1,231,408] Length = 152 Score = 48.5 bits (114), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 38/136 (27%), Positives = 61/136 (44%), Gaps = 7/136 (5%) Query: 20 RLAAVQALYQIDIIGCSTTE--IISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVM 77 R A+QAL+ +D T E I + E E + E V +++D ++ GV Sbjct: 18 REMALQALFPLDFNADLTKEDAIFNAIELDHRDMINEDESEFVPVYLD-----TLVGGVC 72 Query: 78 DRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDF 137 +K +D +I L W +R+ + ILR + E+ VP V ++E + +A F Sbjct: 73 AKKDELDKVIEKHLKNNWHINRISKMDLVILRIAIFEMTYVTDVPAAVALNEAIELAKTF 132 Query: 138 FYGDEPKFINAVLDKV 153 KF+N VL V Sbjct: 133 SDDRSRKFVNGVLSNV 148 >gi|255524173|ref|ZP_05391133.1| NusB antitermination factor [Clostridium carboxidivorans P7] gi|296186630|ref|ZP_06855032.1| transcription antitermination factor NusB [Clostridium carboxidivorans P7] gi|255512158|gb|EET88438.1| NusB antitermination factor [Clostridium carboxidivorans P7] gi|296048667|gb|EFG88099.1| transcription antitermination factor NusB [Clostridium carboxidivorans P7] Length = 155 Score = 48.5 bits (114), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 32/110 (29%), Positives = 53/110 (48%), Gaps = 2/110 (1%) Query: 42 SEYETYRFCADTELDVESVYLH-VDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRL 100 SE + E+D E++ L +D+E+ ++ GV + K+ ID I L W +RL Sbjct: 40 SELQITGIEGKNEIDPENIDLKDIDMEYVIRVLKGVQENKESIDSAIEKHLI-NWKLNRL 98 Query: 101 DMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVL 150 + +ILR E + ++P V I+E + +A + FIN VL Sbjct: 99 SKLDVAILRVCTYEFLYEDNIPKNVSINEAIELAKRYSGDKSAAFINGVL 148 >gi|116515210|ref|YP_802839.1| hypothetical protein BCc_285 [Buchnera aphidicola str. Cc (Cinara cedri)] gi|122285394|sp|Q057F3|NUSB_BUCCC RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|116257064|gb|ABJ90746.1| transcription termination [Buchnera aphidicola str. Cc (Cinara cedri)] Length = 142 Score = 48.5 bits (114), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 43/150 (28%), Positives = 70/150 (46%), Gaps = 13/150 (8%) Query: 12 LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71 + +R AR A+Q LY I S ++ E E Y + + ++ +Y H Sbjct: 1 MKSKRRKARELAIQVLYSWQI---SKKIVLFETEKYVIEQNKKYSLDKIYFHK------- 50 Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131 I+ GV+ K + +RLD I +ILR E+I+ +P +VII+E + Sbjct: 51 IVTGVI--KNIFYIDKIIKKNISKKKNRLDYIEQAILRLASYEIIKRLDIPYKVIINEGI 108 Query: 132 CIAHDFFYGDEPKFINAVLDK-VSRKEEIK 160 +A + KFIN++LDK ++ K IK Sbjct: 109 ELAKIYGSNKSHKFINSILDKIITNKNNIK 138 >gi|163840712|ref|YP_001625117.1| transcription antitermination factor [Renibacterium salmoninarum ATCC 33209] gi|162954188|gb|ABY23703.1| transcription antitermination factor [Renibacterium salmoninarum ATCC 33209] Length = 143 Score = 48.5 bits (114), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 25/84 (29%), Positives = 43/84 (51%), Gaps = 1/84 (1%) Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131 II GV +++ ID + + + W+ R+ + LR G EL+ VP V +SE V Sbjct: 54 IIDGVGQKQEEIDEFLQTY-AQGWTLERMPAVDLIALRIGAWELLYNDDVPDAVAVSEAV 112 Query: 132 CIAHDFFYGDEPKFINAVLDKVSR 155 +A + P+FIN +L ++ + Sbjct: 113 ELAKQLSTDESPQFINGLLGRLQQ 136 >gi|258515792|ref|YP_003192014.1| NusB antitermination factor [Desulfotomaculum acetoxidans DSM 771] gi|257779497|gb|ACV63391.1| NusB antitermination factor [Desulfotomaculum acetoxidans DSM 771] Length = 156 Score = 48.5 bits (114), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 36/145 (24%), Positives = 70/145 (48%), Gaps = 14/145 (9%) Query: 12 LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71 +S R G R A+Q L+QI++ G E AD+ V +E+ R Sbjct: 1 MSRREG--RQIAMQILFQIEVGGIDPEEAFKNT-----VADSTCPVPI------MEFARQ 47 Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131 ++ G + + ID +IS +++ W R+ + +++R + E+ ++P+ V +E + Sbjct: 48 LVFGTLGHLKEIDRVISE-ISKGWRLDRIANVDKTLIRMALYEIFYEDNIPLNVSANEAI 106 Query: 132 CIAHDFFYGDEPKFINAVLDKVSRK 156 +A F + KF+N ++ KV +K Sbjct: 107 ELAKIFGGEESGKFVNGIIGKVVQK 131 >gi|116495122|ref|YP_806856.1| transcription antitermination protein NusB [Lactobacillus casei ATCC 334] gi|122263461|sp|Q038F8|NUSB_LACC3 RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|116105272|gb|ABJ70414.1| NusB antitermination factor [Lactobacillus casei ATCC 334] Length = 135 Score = 48.5 bits (114), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 28/105 (26%), Positives = 52/105 (49%), Gaps = 6/105 (5%) Query: 52 DTELDVESVYLHV---DLE---WFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILC 105 + E D ++VY V D E + ++ GV+ ++ +D ++ L + W+ SRL Sbjct: 21 NPEADKDAVYAEVLPQDTEVPAYLTTLVEGVLSKQADLDAALTPQLKKGWTLSRLTKPDL 80 Query: 106 SILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVL 150 ILR G+ E+ ++P I+E + +A + KF+N +L Sbjct: 81 IILRLGLYEIRYEEAMPEAAAINEAINLAKRYSDDQSAKFVNGIL 125 >gi|242309730|ref|ZP_04808885.1| transcription antitermination protein NusB [Helicobacter pullorum MIT 98-5489] gi|239523731|gb|EEQ63597.1| transcription antitermination protein NusB [Helicobacter pullorum MIT 98-5489] Length = 148 Score = 48.5 bits (114), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 30/90 (33%), Positives = 50/90 (55%), Gaps = 2/90 (2%) Query: 67 EWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVI 126 E+ + GV+ + +DL IS L + W FS++ + +ILR GV E+I H + + Sbjct: 44 EFATSLFEGVIANLEALDLRISHQLKD-WDFSKIGDMEKAILRLGVYEIIFNH-LSKAIA 101 Query: 127 ISEYVCIAHDFFYGDEPKFINAVLDKVSRK 156 I+E + +A F + KFIN VLD +++ Sbjct: 102 INEALELAKSFGNENSAKFINGVLDGIAKN 131 >gi|260588123|ref|ZP_05854036.1| transcription antitermination factor NusB [Blautia hansenii DSM 20583] gi|260541650|gb|EEX22219.1| transcription antitermination factor NusB [Blautia hansenii DSM 20583] Length = 135 Score = 48.5 bits (114), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 28/81 (34%), Positives = 45/81 (55%), Gaps = 4/81 (4%) Query: 80 KQHIDLLISSCLTEK---WSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHD 136 K+H++ I + L EK W R+ + +ILR V E+ VPV+V I+E V I+ Sbjct: 55 KEHLEE-IDALLNEKSAGWKTKRMSKVDLNILRLAVYEMKYDEDVPVKVAINEAVEISKS 113 Query: 137 FFYGDEPKFINAVLDKVSRKE 157 F D F+N +L K++R++ Sbjct: 114 FGGDDSASFVNGILGKIARED 134 >gi|69244729|ref|ZP_00602993.1| Antitermination protein NusB [Enterococcus faecium DO] gi|227550442|ref|ZP_03980491.1| transcription antitermination protein NusB [Enterococcus faecium TX1330] gi|257879351|ref|ZP_05659004.1| antitermination protein NusB [Enterococcus faecium 1,230,933] gi|257881783|ref|ZP_05661436.1| antitermination protein NusB [Enterococcus faecium 1,231,502] gi|257888470|ref|ZP_05668123.1| antitermination protein NusB [Enterococcus faecium 1,141,733] gi|257890177|ref|ZP_05669830.1| antitermination protein NusB [Enterococcus faecium 1,231,410] gi|257897155|ref|ZP_05676808.1| antitermination protein NusB [Enterococcus faecium Com12] gi|257899153|ref|ZP_05678806.1| antitermination protein NusB [Enterococcus faecium Com15] gi|258615757|ref|ZP_05713527.1| transcription antitermination protein NusB [Enterococcus faecium DO] gi|260558793|ref|ZP_05830982.1| antitermination protein NusB [Enterococcus faecium C68] gi|261206503|ref|ZP_05921203.1| antitermination protein NusB [Enterococcus faecium TC 6] gi|289565413|ref|ZP_06445862.1| transcription antitermination factor NusB [Enterococcus faecium D344SRF] gi|293377380|ref|ZP_06623584.1| transcription antitermination factor NusB [Enterococcus faecium PC4.1] gi|293553169|ref|ZP_06673806.1| transcription antitermination factor NusB [Enterococcus faecium E1039] gi|293560490|ref|ZP_06676982.1| transcription antitermination factor NusB [Enterococcus faecium E1162] gi|293568316|ref|ZP_06679640.1| transcription antitermination factor NusB [Enterococcus faecium E1071] gi|293571749|ref|ZP_06682768.1| transcription antitermination factor NusB [Enterococcus faecium E980] gi|294614729|ref|ZP_06694631.1| transcription antitermination factor NusB [Enterococcus faecium E1636] gi|294618975|ref|ZP_06698470.1| transcription antitermination factor NusB [Enterococcus faecium E1679] gi|294621587|ref|ZP_06700752.1| transcription antitermination factor NusB [Enterococcus faecium U0317] gi|314937887|ref|ZP_07845203.1| transcription antitermination factor NusB [Enterococcus faecium TX0133a04] gi|314941378|ref|ZP_07848271.1| transcription antitermination factor NusB [Enterococcus faecium TX0133C] gi|314950137|ref|ZP_07853423.1| transcription antitermination factor NusB [Enterococcus faecium TX0082] gi|314951322|ref|ZP_07854376.1| transcription antitermination factor NusB [Enterococcus faecium TX0133A] gi|314992847|ref|ZP_07858248.1| transcription antitermination factor NusB [Enterococcus faecium TX0133B] gi|314998051|ref|ZP_07862939.1| transcription antitermination factor NusB [Enterococcus faecium TX0133a01] gi|68196320|gb|EAN10749.1| Antitermination protein NusB [Enterococcus faecium DO] gi|227180343|gb|EEI61315.1| transcription antitermination protein NusB [Enterococcus faecium TX1330] gi|257813579|gb|EEV42337.1| antitermination protein NusB [Enterococcus faecium 1,230,933] gi|257817441|gb|EEV44769.1| antitermination protein NusB [Enterococcus faecium 1,231,502] gi|257824524|gb|EEV51456.1| antitermination protein NusB [Enterococcus faecium 1,141,733] gi|257826537|gb|EEV53163.1| antitermination protein NusB [Enterococcus faecium 1,231,410] gi|257833720|gb|EEV60141.1| antitermination protein NusB [Enterococcus faecium Com12] gi|257837065|gb|EEV62139.1| antitermination protein NusB [Enterococcus faecium Com15] gi|260075252|gb|EEW63565.1| antitermination protein NusB [Enterococcus faecium C68] gi|260079213|gb|EEW66904.1| antitermination protein NusB [Enterococcus faecium TC 6] gi|289162742|gb|EFD10593.1| transcription antitermination factor NusB [Enterococcus faecium D344SRF] gi|291589028|gb|EFF20852.1| transcription antitermination factor NusB [Enterococcus faecium E1071] gi|291592467|gb|EFF24074.1| transcription antitermination factor NusB [Enterococcus faecium E1636] gi|291594636|gb|EFF26018.1| transcription antitermination factor NusB [Enterococcus faecium E1679] gi|291598752|gb|EFF29804.1| transcription antitermination factor NusB [Enterococcus faecium U0317] gi|291602579|gb|EFF32794.1| transcription antitermination factor NusB [Enterococcus faecium E1039] gi|291605638|gb|EFF35080.1| transcription antitermination factor NusB [Enterococcus faecium E1162] gi|291608206|gb|EFF37509.1| transcription antitermination factor NusB [Enterococcus faecium E980] gi|292644072|gb|EFF62178.1| transcription antitermination factor NusB [Enterococcus faecium PC4.1] gi|313587893|gb|EFR66738.1| transcription antitermination factor NusB [Enterococcus faecium TX0133a01] gi|313592651|gb|EFR71496.1| transcription antitermination factor NusB [Enterococcus faecium TX0133B] gi|313596539|gb|EFR75384.1| transcription antitermination factor NusB [Enterococcus faecium TX0133A] gi|313599801|gb|EFR78644.1| transcription antitermination factor NusB [Enterococcus faecium TX0133C] gi|313642745|gb|EFS07325.1| transcription antitermination factor NusB [Enterococcus faecium TX0133a04] gi|313643578|gb|EFS08158.1| transcription antitermination factor NusB [Enterococcus faecium TX0082] Length = 149 Score = 48.5 bits (114), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 39/141 (27%), Positives = 64/141 (45%), Gaps = 7/141 (4%) Query: 20 RLAAVQALYQIDIIGCSTTE--IISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVM 77 R A+QAL+ +D T E I + E E + E V +++D ++ GV Sbjct: 11 REMALQALFPLDFNADLTKEDAIFNAIELDHRDMINEDESEFVPVYLD-----TLVGGVC 65 Query: 78 DRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDF 137 +K +D +I L W +R+ + ILR + E+ VP V ++E + +A F Sbjct: 66 AKKDELDKVIEKHLKNNWHINRISKMDLVILRIAIFEMTYVTDVPAAVALNEAIELAKTF 125 Query: 138 FYGDEPKFINAVLDKVSRKEE 158 KF+N VL V ++ E Sbjct: 126 SDDRSRKFVNGVLSNVLKELE 146 >gi|237752651|ref|ZP_04583131.1| transcription termination protein [Helicobacter winghamensis ATCC BAA-430] gi|229376140|gb|EEO26231.1| transcription termination protein [Helicobacter winghamensis ATCC BAA-430] Length = 199 Score = 48.5 bits (114), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 38/144 (26%), Positives = 67/144 (46%), Gaps = 21/144 (14%) Query: 16 RGIARLAAVQALYQI----DIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71 R AR+A Q LY D I EI+SE++ + E+ + Sbjct: 4 RTHARVAVAQLLYAYGSGNDGISKFVEEILSEHKIK---------------NAQNEFAKT 48 Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131 + +GV++ + +DL I + + W F R+ + +ILR G E+I + ++I+E + Sbjct: 49 LFNGVLEHLEEVDLRIKHQI-KNWDFERIGDMERAILRLGAYEII-FSGMDKAIVINEAL 106 Query: 132 CIAHDFFYGDEPKFINAVLDKVSR 155 I +F KFIN +LD +++ Sbjct: 107 EITKNFSNETSTKFINGILDGIAK 130 >gi|168335572|ref|ZP_02693635.1| transcription termination factor [Epulopiscium sp. 'N.t. morphotype B'] Length = 135 Score = 48.1 bits (113), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 27/83 (32%), Positives = 44/83 (53%), Gaps = 1/83 (1%) Query: 74 HGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCI 133 G++D ID I + L + W+ SR+ + ILR V E+ +P +V I+E V I Sbjct: 49 EGIVDNMDAIDTEIEANLVD-WNLSRIAKVDLMILRLAVYEINYAKDLPPKVAINEAVEI 107 Query: 134 AHDFFYGDEPKFINAVLDKVSRK 156 A ++ KFIN +L +++K Sbjct: 108 AQEYSTEKSGKFINGILGNMNKK 130 >gi|255318080|ref|ZP_05359325.1| transcription antitermination factor NusB [Acinetobacter radioresistens SK82] gi|262380575|ref|ZP_06073729.1| transcription antitermination factor NusB [Acinetobacter radioresistens SH164] gi|255304903|gb|EET84075.1| transcription antitermination factor NusB [Acinetobacter radioresistens SK82] gi|262298021|gb|EEY85936.1| transcription antitermination factor NusB [Acinetobacter radioresistens SH164] Length = 149 Score = 48.1 bits (113), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 35/137 (25%), Positives = 63/137 (45%), Gaps = 13/137 (9%) Query: 19 ARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMD 78 AR AVQ +Y+ + EI + E+ VDL ++ ++ V+ Sbjct: 15 ARRFAVQGIYEWQMSHNPVHEI-----------EARTRAENAMHKVDLGYYHELLTQVVA 63 Query: 79 RKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFF 138 + + +D L+ L + LD + + LR G EL + +P V++ E + +A F Sbjct: 64 QHEALDTLLVPVLDRE--LGALDGVELATLRLGAYELRDHLEIPYRVVLDEAIELAKHFG 121 Query: 139 YGDEPKFINAVLDKVSR 155 D K+IN VLD++++ Sbjct: 122 GADSHKYINGVLDRLAQ 138 >gi|167037510|ref|YP_001665088.1| transcription antitermination protein NusB [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|167040172|ref|YP_001663157.1| transcription antitermination protein NusB [Thermoanaerobacter sp. X514] gi|256752868|ref|ZP_05493706.1| NusB antitermination factor [Thermoanaerobacter ethanolicus CCSD1] gi|300914255|ref|ZP_07131571.1| NusB antitermination factor [Thermoanaerobacter sp. X561] gi|307724509|ref|YP_003904260.1| NusB antitermination factor [Thermoanaerobacter sp. X513] gi|320115924|ref|YP_004186083.1| transcription antitermination factor NusB [Thermoanaerobacter brockii subsp. finnii Ako-1] gi|238687554|sp|B0K0U6|NUSB_THEPX RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|238687696|sp|B0K9D9|NUSB_THEP3 RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|166854412|gb|ABY92821.1| NusB antitermination factor [Thermoanaerobacter sp. X514] gi|166856344|gb|ABY94752.1| NusB antitermination factor [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|256748245|gb|EEU61311.1| NusB antitermination factor [Thermoanaerobacter ethanolicus CCSD1] gi|300889190|gb|EFK84336.1| NusB antitermination factor [Thermoanaerobacter sp. X561] gi|307581570|gb|ADN54969.1| NusB antitermination factor [Thermoanaerobacter sp. X513] gi|319929015|gb|ADV79700.1| transcription antitermination factor NusB [Thermoanaerobacter brockii subsp. finnii Ako-1] Length = 140 Score = 48.1 bits (113), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 36/143 (25%), Positives = 65/143 (45%), Gaps = 14/143 (9%) Query: 15 RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74 R AR V+ LYQ D+ ++I+ + + + + E+ + Sbjct: 2 NRTEAREWVVKMLYQYDVSRLPISKILENFYKEKDPGEQK------------EYIENTVI 49 Query: 75 GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134 G ++ + ID I ++ W+ +R+ I +ILR + E+ + ++PV + I+E V IA Sbjct: 50 GAIEHLEEIDKEIER-YSQNWALNRMPKIDLAILRCSIYEM-QYGNIPVNISINEAVEIA 107 Query: 135 HDFFYGDEPKFINAVLDKVSRKE 157 + D P FIN +L R E Sbjct: 108 KKYSTEDSPAFINGLLGAFVRDE 130 >gi|124268133|ref|YP_001022137.1| putative N utilization substance B [Methylibium petroleiphilum PM1] gi|124260908|gb|ABM95902.1| putative N utilization substance B (transcriptional antiterminator)(l factor) transcription regulator protein [Methylibium petroleiphilum PM1] Length = 176 Score = 48.1 bits (113), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 43/148 (29%), Positives = 64/148 (43%), Gaps = 15/148 (10%) Query: 7 KKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDL 66 K K S RR +R A+Q LYQ + G I + ELD + D Sbjct: 26 KPAQKSSRRR--SREFALQGLYQWLVSGSEAVVIEAHMR--------ELDG---FKQADA 72 Query: 67 EWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVI 126 F ++HG + +D +++ + K + L I +L G EL C +P V Sbjct: 73 AHFDALLHGCVAEAAALDAVLARHVDRK--TTELSPIEHGVLMIGAYELKHCIDIPYRVA 130 Query: 127 ISEYVCIAHDFFYGDEPKFINAVLDKVS 154 I+E V +A F D K++N VLDK + Sbjct: 131 INEAVELAKSFGGTDGHKYVNGVLDKAA 158 >gi|281357054|ref|ZP_06243544.1| NusB antitermination factor [Victivallis vadensis ATCC BAA-548] gi|281316612|gb|EFB00636.1| NusB antitermination factor [Victivallis vadensis ATCC BAA-548] Length = 170 Score = 48.1 bits (113), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 33/96 (34%), Positives = 50/96 (52%), Gaps = 3/96 (3%) Query: 67 EWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVI 126 E+ + + + V K+ ID I +E W + RL ++ +I+R V E++ VP V Sbjct: 67 EYAQQLYNNVAVHKEEIDATIQ-ARSENWEWDRLSVVDRNIMRIAVAEMLYEEEVPPVVS 125 Query: 127 ISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRS 162 I E V IA D+ FIN VL+ V K+ +KRS Sbjct: 126 IDEAVEIARDYSGEAAGNFINGVLNGV--KDTLKRS 159 >gi|221135088|ref|ZP_03561391.1| transcription antitermination protein NusB [Glaciecola sp. HTCC2999] Length = 145 Score = 48.1 bits (113), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 34/106 (32%), Positives = 52/106 (49%), Gaps = 11/106 (10%) Query: 57 VESVYLH---------VDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSI 107 +ESV LH +DL +F+ ++ + +D+ I L LD I +I Sbjct: 32 IESVELHLATTNDMSKIDLAFFQELLRDTAKKVVELDVAIKPYLGR--LPEELDPIEKAI 89 Query: 108 LRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKV 153 LR LEL + VP +V+I+E + +A F + KF+N VLDK Sbjct: 90 LRLATLELTQRIDVPYKVVINEAIELAKSFGAEESHKFVNGVLDKA 135 >gi|299768336|ref|YP_003730362.1| transcription antitermination protein NusB [Acinetobacter sp. DR1] gi|298698424|gb|ADI88989.1| transcription antitermination protein NusB [Acinetobacter sp. DR1] Length = 149 Score = 48.1 bits (113), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 30/98 (30%), Positives = 50/98 (51%), Gaps = 2/98 (2%) Query: 57 VESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELI 116 E+ VDL ++ ++ V+ + +D L+ L + S LD + + LR G EL Sbjct: 42 AENAMHKVDLNYYHELLTQVIALRDDLDALLIPVLDRE--LSALDGVELATLRLGAYELR 99 Query: 117 ECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVS 154 + VP V++ E + +A F D K+IN VLD++S Sbjct: 100 DHLEVPYRVVLDEAIELAKHFGGADSHKYINGVLDRLS 137 >gi|257784275|ref|YP_003179492.1| NusB antitermination factor [Atopobium parvulum DSM 20469] gi|257472782|gb|ACV50901.1| NusB antitermination factor [Atopobium parvulum DSM 20469] Length = 167 Score = 48.1 bits (113), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 37/138 (26%), Positives = 68/138 (49%), Gaps = 14/138 (10%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 R AR A+Q L+Q + S E++ T ++ LD E+ R++ G Sbjct: 8 RTRARSQALQLLFQAEATNRSVLEVLGGDYT---LSEGPLD----------EYARLLAVG 54 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135 + +D +I++ ++ WS R+ + ++LR + E+++ V V V I+E V +A Sbjct: 55 ADGIRDDLDDIIAA-YSKDWSIDRMPSVDRNLLRISLYEILKVPEVDVAVAINEVVDLAR 113 Query: 136 DFFYGDEPKFINAVLDKV 153 + D P+FIN VL ++ Sbjct: 114 AYCGDDSPRFINGVLGRI 131 >gi|332525525|ref|ZP_08401682.1| putative N utilization substance B [Rubrivivax benzoatilyticus JA2] gi|332109092|gb|EGJ10015.1| putative N utilization substance B [Rubrivivax benzoatilyticus JA2] Length = 159 Score = 48.1 bits (113), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 39/153 (25%), Positives = 66/153 (43%), Gaps = 15/153 (9%) Query: 2 TIQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVY 61 T + K + RR +R A+Q LY+ I G I D + + + Sbjct: 6 TAARKRAAPKSARRR--SREIALQGLYEWLISGADAGTI-----------DAHMREQDGF 52 Query: 62 LHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSV 121 D F ++HG + +D +++ + + ++L + ++L G EL C V Sbjct: 53 DKCDRAHFDALLHGCIAEASALDAVLARHVDRR--TNQLSPVEHAVLMIGAYELTHCLEV 110 Query: 122 PVEVIISEYVCIAHDFFYGDEPKFINAVLDKVS 154 P V I+E V +A F D K++N VLDK + Sbjct: 111 PYRVAINEAVELAKSFGGTDGHKYVNGVLDKAA 143 >gi|315652076|ref|ZP_07905077.1| transcription antitermination factor NusB [Eubacterium saburreum DSM 3986] gi|315485723|gb|EFU76104.1| transcription antitermination factor NusB [Eubacterium saburreum DSM 3986] Length = 150 Score = 48.1 bits (113), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 30/97 (30%), Positives = 49/97 (50%), Gaps = 1/97 (1%) Query: 61 YLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHS 120 Y D+E+ R V D + ID +I+ L++ W R+ + SILR + E+ Sbjct: 55 YGDGDIEYIRSKAMLVRDNQAEIDKMITE-LSQGWKLERIGRVEKSILRLAIAEMKYDSD 113 Query: 121 VPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKE 157 +PV V I+E V +A + + F+NA+L K +E Sbjct: 114 IPVSVAINEAVELAKAYGRDESYSFVNAILSKAGVEE 150 >gi|224476635|ref|YP_002634241.1| transcription antitermination protein NusB [Staphylococcus carnosus subsp. carnosus TM300] gi|254772655|sp|B9DNQ0|NUSB_STACT RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|222421242|emb|CAL28056.1| putative N utilization substance protein NusB [Staphylococcus carnosus subsp. carnosus TM300] Length = 128 Score = 48.1 bits (113), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 42/139 (30%), Positives = 66/139 (47%), Gaps = 13/139 (9%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 R +R A QAL+Q+++ +S E F D D+E +++ W ++ G Sbjct: 3 RKESRSQAFQALFQLEMENTD----LSIDEAINFIKDDYPDLEFDFIY----W---LVSG 51 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135 V D + +D I + L + W SRL ILR EL + P +VII+E V +A Sbjct: 52 VKDHEPVLDEKIQNNLKD-WKISRLLKTDRIILRMAAFELANSDTPP-KVIINEAVELAK 109 Query: 136 DFFYGDEPKFINAVLDKVS 154 + D +FIN VL ++ Sbjct: 110 QYSDDDHYRFINGVLSNLN 128 >gi|78044961|ref|YP_360813.1| transcription antitermination factor NusB [Carboxydothermus hydrogenoformans Z-2901] gi|119390754|sp|Q3AAM1|NUSB_CARHZ RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|77997076|gb|ABB15975.1| transcription antitermination factor NusB [Carboxydothermus hydrogenoformans Z-2901] Length = 144 Score = 48.1 bits (113), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 38/141 (26%), Positives = 71/141 (50%), Gaps = 11/141 (7%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 R AR A +AL+ +D T + + + A+ ++ E + +++ R ++ G Sbjct: 3 RHTARELAFKALFGLDFAPEKTLDTLESLWAEK-IAEGKIPPEKL-----VDFSRELVRG 56 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135 V+++K+ +D +I W F RL + ++LR + E++ + + V I E V +A Sbjct: 57 VIEKKERLDEIIRRRAI-GWDFKRLAKVDKTLLRLALYEMLYRPDIDIPVSIDEAVELAK 115 Query: 136 DFFYGDE--PKFINAVLDKVS 154 YG+E PKFIN +L V+ Sbjct: 116 --VYGEEESPKFINGILGYVA 134 >gi|161525612|ref|YP_001580624.1| transcription antitermination protein NusB [Burkholderia multivorans ATCC 17616] gi|189349659|ref|YP_001945287.1| transcription antitermination protein NusB [Burkholderia multivorans ATCC 17616] gi|221201158|ref|ZP_03574198.1| transcription antitermination factor NusB [Burkholderia multivorans CGD2M] gi|221206389|ref|ZP_03579402.1| transcription antitermination factor NusB [Burkholderia multivorans CGD2] gi|221213666|ref|ZP_03586640.1| transcription antitermination factor NusB [Burkholderia multivorans CGD1] gi|238687024|sp|A9AF25|NUSB_BURM1 RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|160343041|gb|ABX16127.1| NusB antitermination factor [Burkholderia multivorans ATCC 17616] gi|189333681|dbj|BAG42751.1| N utilization substance protein B [Burkholderia multivorans ATCC 17616] gi|221166455|gb|EED98927.1| transcription antitermination factor NusB [Burkholderia multivorans CGD1] gi|221173698|gb|EEE06132.1| transcription antitermination factor NusB [Burkholderia multivorans CGD2] gi|221179008|gb|EEE11415.1| transcription antitermination factor NusB [Burkholderia multivorans CGD2M] Length = 145 Score = 48.1 bits (113), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 42/147 (28%), Positives = 65/147 (44%), Gaps = 14/147 (9%) Query: 10 LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF 69 +K S RR +R A Q LYQ + S+ EI D +L Y D Sbjct: 1 MKKSARR-QSRELATQGLYQWLLSNASSGEI-----------DAQLRGALGYDKADKALL 48 Query: 70 RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISE 129 I+HGV+ ++H L+ + + +L + ++L EL P V+I+E Sbjct: 49 DAILHGVI--REHATLVDALTPSLDRPIDQLSPVERAVLLIATFELTHHIETPYRVVINE 106 Query: 130 YVCIAHDFFYGDEPKFINAVLDKVSRK 156 V +A F D K++N VLDK++ K Sbjct: 107 AVELAKTFGGSDGYKYVNGVLDKLAAK 133 >gi|306825791|ref|ZP_07459130.1| transcription antitermination factor NusB [Streptococcus sp. oral taxon 071 str. 73H25AP] gi|304432152|gb|EFM35129.1| transcription antitermination factor NusB [Streptococcus sp. oral taxon 071 str. 73H25AP] Length = 140 Score = 48.1 bits (113), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 33/117 (28%), Positives = 54/117 (46%), Gaps = 8/117 (6%) Query: 49 FCADTELDVESVYLH------VDLEWFRV-IIHGVMDRKQHIDLLISSCLTEKWSFSRLD 101 F D E Y H V L F ++ GV +K+ +D I+ L W+ RL Sbjct: 25 FGTDVETACRFAYTHDREDTDVQLPAFLTGLVSGVQAKKEELDKQITQHLKAGWTIERLT 84 Query: 102 MILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEE 158 ++ ++LR GV E I P V ++E + +A +F +FIN +L + +E+ Sbjct: 85 LVERNLLRLGVFE-ITSFDTPQLVAVNEAIELAKNFSDQKSARFINGLLSQFVTEEQ 140 >gi|300854298|ref|YP_003779282.1| nusB-like protein [Clostridium ljungdahlii DSM 13528] gi|300434413|gb|ADK14180.1| nusB-like protein [Clostridium ljungdahlii DSM 13528] Length = 158 Score = 48.1 bits (113), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 25/88 (28%), Positives = 45/88 (51%), Gaps = 1/88 (1%) Query: 63 HVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVP 122 +VD+E+ + ++ G+ + K +D I L W+ +RL + +ILR E + +P Sbjct: 60 NVDMEYVKRVVKGIEENKDSLDKEIEKYLR-NWTLNRLPKVDAAILRICTYEFLYEQDIP 118 Query: 123 VEVIISEYVCIAHDFFYGDEPKFINAVL 150 +V I+E + +A + FIN VL Sbjct: 119 EKVSINEAIELAKKYSSEKSAPFINGVL 146 >gi|291300632|ref|YP_003511910.1| NusB antitermination factor [Stackebrandtia nassauensis DSM 44728] gi|290569852|gb|ADD42817.1| NusB antitermination factor [Stackebrandtia nassauensis DSM 44728] Length = 147 Score = 48.1 bits (113), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 30/87 (34%), Positives = 41/87 (47%) Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131 ++ GV + +D +I+ CL W R+ + +ILR EL V V ISE V Sbjct: 60 LVDGVAEYLDEVDDVIARCLHSGWYLDRIAAVDRNILRVAAFELRYREDVDAAVAISEAV 119 Query: 132 CIAHDFFYGDEPKFINAVLDKVSRKEE 158 IA D P F+N VL VS E+ Sbjct: 120 KIAEVLCGEDSPAFVNGVLQSVSELEK 146 >gi|311748704|ref|ZP_07722489.1| antitermination factor [Algoriphagus sp. PR1] gi|126577236|gb|EAZ81484.1| antitermination factor [Algoriphagus sp. PR1] Length = 394 Score = 48.1 bits (113), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 38/158 (24%), Positives = 69/158 (43%), Gaps = 17/158 (10%) Query: 8 KDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLE 67 KDL + + + R A + L + S T + E ++ D E Sbjct: 243 KDLNWTENKSVVRSLASKILKNAAQVDGSETNPLPEI--------------AMNWEEDKE 288 Query: 68 WFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVII 127 +F+ I + ++ + LIS T+ W RL I+ + E+ S+PV+V I Sbjct: 289 FFQNIFNFTLENEAESKALISQK-TKNWDIDRLAFTDKIIISMALAEMKNFPSIPVKVSI 347 Query: 128 SEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRSGCV 165 +EY+ I+ + +F+N +LD +S+ E+ SG + Sbjct: 348 NEYIDISKTYSTPKSKQFVNGLLDVMSK--ELTESGQI 383 >gi|257869052|ref|ZP_05648705.1| antitermination protein NusB [Enterococcus gallinarum EG2] gi|257803216|gb|EEV32038.1| antitermination protein NusB [Enterococcus gallinarum EG2] Length = 150 Score = 48.1 bits (113), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 27/90 (30%), Positives = 46/90 (51%) Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131 ++ GV K+ +D +I S L W RL + +ILR + E++ +VP V ++E + Sbjct: 60 LVAGVCQYKEALDEVIQSHLKSGWKIQRLSKMDVTILRIALYEMVYVDNVPNRVALNEAI 119 Query: 132 CIAHDFFYGDEPKFINAVLDKVSRKEEIKR 161 +A F KF+N +L V+ + E K Sbjct: 120 ELAKTFSDDQSRKFVNGILSNVNSEIESKN 149 >gi|284041158|ref|YP_003391088.1| NusB antitermination factor [Spirosoma linguale DSM 74] gi|283820451|gb|ADB42289.1| NusB antitermination factor [Spirosoma linguale DSM 74] Length = 378 Score = 48.1 bits (113), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 23/64 (35%), Positives = 37/64 (57%) Query: 93 EKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDK 152 + W R+ MI IL+ V EL+ ++PV+V I+EY+ +A + KF+N +LD Sbjct: 297 KNWDVERVAMIDKIILKLAVCELLSFPNIPVKVTINEYIELAKAYSTPKSGKFVNGILDN 356 Query: 153 VSRK 156 +S K Sbjct: 357 LSEK 360 >gi|148993974|ref|ZP_01823344.1| transcription antitermination factor NusB [Streptococcus pneumoniae SP9-BS68] gi|168488122|ref|ZP_02712321.1| transcription antitermination factor NusB [Streptococcus pneumoniae SP195] gi|225858284|ref|YP_002739794.1| transcription antitermination protein NusB [Streptococcus pneumoniae 70585] gi|254772657|sp|C1C5G8|NUSB_STRP7 RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|147927563|gb|EDK78590.1| transcription antitermination factor NusB [Streptococcus pneumoniae SP9-BS68] gi|183573223|gb|EDT93751.1| transcription antitermination factor NusB [Streptococcus pneumoniae SP195] gi|225721195|gb|ACO17049.1| transcription antitermination factor NusB [Streptococcus pneumoniae 70585] gi|301793671|emb|CBW36056.1| N utilization substance protein B homolog (NusB protein) [Streptococcus pneumoniae INV104] gi|332075276|gb|EGI85746.1| transcription antitermination factor NusB [Streptococcus pneumoniae GA17570] Length = 140 Score = 48.1 bits (113), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 26/87 (29%), Positives = 46/87 (52%), Gaps = 1/87 (1%) Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131 ++ GV +K+ +D I+ L W+ RL ++ ++LR GV E I P V ++E + Sbjct: 55 LVSGVQAKKEELDKQITQHLKVGWTIERLTLVERNLLRLGVFE-ITSFDTPQLVAVNEAI 113 Query: 132 CIAHDFFYGDEPKFINAVLDKVSRKEE 158 +A DF +FIN +L + +E+ Sbjct: 114 ELAKDFSDQKSARFINGLLSQFVTEEQ 140 >gi|86741891|ref|YP_482291.1| NusB antitermination factor [Frankia sp. CcI3] gi|119390771|sp|Q2J830|NUSB_FRASC RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|86568753|gb|ABD12562.1| NusB antitermination factor [Frankia sp. CcI3] Length = 135 Score = 48.1 bits (113), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 27/79 (34%), Positives = 42/79 (53%), Gaps = 1/79 (1%) Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131 ++ GV++R+ ID I+ E W+ R+ + +ILR VLEL+ VP V I E V Sbjct: 28 LVEGVVERRGEIDERIARY-AEGWTLERMPPVDRNILRIAVLELLWRPDVPDRVAIDEAV 86 Query: 132 CIAHDFFYGDEPKFINAVL 150 +A + P F+N +L Sbjct: 87 ELAKNLSTHRSPAFVNGLL 105 >gi|294627702|ref|ZP_06706284.1| transcription antitermination protein NusB [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] gi|294667130|ref|ZP_06732355.1| transcription antitermination protein NusB [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] gi|292598054|gb|EFF42209.1| transcription antitermination protein NusB [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] gi|292603140|gb|EFF46566.1| transcription antitermination protein NusB [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] Length = 156 Score = 48.1 bits (113), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 32/130 (24%), Positives = 58/130 (44%), Gaps = 13/130 (10%) Query: 25 QALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHID 84 QA+Y I G ++I+++ E + DL +F ++ GV+ + +D Sbjct: 30 QAVYAWQISGGFAKQVIAQFAH-----------EQAHEVADLAYFENLVEGVLSNRAELD 78 Query: 85 LLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPK 144 ++ L S +D I ++LR EL+ VP V+I+E + A F Sbjct: 79 TALTPYLDR--SVEEVDAIERAVLRLAAYELLYRQDVPYRVVINEAIETAKRFGSEHGHT 136 Query: 145 FINAVLDKVS 154 ++N VLD+ + Sbjct: 137 YVNGVLDRAA 146 >gi|312891647|ref|ZP_07751157.1| NusB antitermination factor [Mucilaginibacter paludis DSM 18603] gi|311295831|gb|EFQ72990.1| NusB antitermination factor [Mucilaginibacter paludis DSM 18603] Length = 315 Score = 48.1 bits (113), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 23/79 (29%), Positives = 44/79 (55%), Gaps = 4/79 (5%) Query: 89 SCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINA 148 + T+ W R+ M+ +++ + E + S+PV+V I+EY+ I+ +F FIN Sbjct: 232 TAKTQNWEPERIAMMDTLLMKMAIAEFVYFPSIPVKVTINEYLEISKEFSTPKSNSFING 291 Query: 149 VLDKV----SRKEEIKRSG 163 +LDK+ + +IK++G Sbjct: 292 ILDKILFELKAEGKIKKTG 310 >gi|88856244|ref|ZP_01130904.1| transcription termination factor [marine actinobacterium PHSC20C1] gi|88814563|gb|EAR24425.1| transcription termination factor [marine actinobacterium PHSC20C1] Length = 137 Score = 48.1 bits (113), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 37/143 (25%), Positives = 63/143 (44%), Gaps = 9/143 (6%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 R AR A+ +Y D+ G S E ++ E+ R +D Y ++ G Sbjct: 4 RSKARKRALDLMYGADVRGESINEALA-TESSRALSDPARATSWAYAQQ-------VVVG 55 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135 + + ID LI + ++ W +R+ + ++LR + E++ VP V ISE V A Sbjct: 56 ITEHGDEIDELIET-YSQGWPLNRMPAVDRALLRIALWEILYNDEVPAGVAISEAVESAK 114 Query: 136 DFFYGDEPKFINAVLDKVSRKEE 158 D FIN +L +++ E Sbjct: 115 VHSTEDSAGFINGLLGRIAASNE 137 >gi|303232029|ref|ZP_07318732.1| ribosomal RNA small subunit methyltransferase B [Veillonella atypica ACS-049-V-Sch6] gi|302513135|gb|EFL55174.1| ribosomal RNA small subunit methyltransferase B [Veillonella atypica ACS-049-V-Sch6] Length = 452 Score = 48.1 bits (113), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 37/139 (26%), Positives = 67/139 (48%), Gaps = 14/139 (10%) Query: 20 RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79 RL AV+AL I+ G ++ +Y + +D +D +F +++GV+ R Sbjct: 14 RLLAVKALSDINRKGAYANIVLQDYISKYNLSD-----------LDRRFFTELVYGVVRR 62 Query: 80 KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139 + ++D +I K +L ++ ILR GV ++I VP ++E V +A Sbjct: 63 RNYLDAIIVHF--AKRPIKKLSSMVVEILRLGVYQIIYMDKVPESAAVNESVKLAKKLTR 120 Query: 140 GDEPKFINAVLDKVSRKEE 158 G F+NA+L V R+++ Sbjct: 121 GLS-GFVNAILRSVIREQD 138 >gi|300767235|ref|ZP_07077147.1| transcription antitermination factor NusB [Lactobacillus plantarum subsp. plantarum ATCC 14917] gi|300495054|gb|EFK30210.1| transcription antitermination factor NusB [Lactobacillus plantarum subsp. plantarum ATCC 14917] Length = 139 Score = 48.1 bits (113), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 26/90 (28%), Positives = 44/90 (48%) Query: 68 WFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVII 127 + ++ GV + + +D I L++KWS +RL ILR EL VP +V + Sbjct: 48 YLSTLVTGVREHQAELDAQIQPYLSQKWSLNRLAKTDLIILRIAFFELQFVDDVPAKVAV 107 Query: 128 SEYVCIAHDFFYGDEPKFINAVLDKVSRKE 157 +E + + F KF++ VL KV + + Sbjct: 108 NEAIELTKAFSDDRSRKFVSGVLGKVVKNQ 137 >gi|50086525|ref|YP_048035.1| transcription antitermination protein NusB [Acinetobacter sp. ADP1] gi|81612974|sp|Q6F6V2|NUSB_ACIAD RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|49532501|emb|CAG70213.1| transcription termination, L factor (N utilization substance protein B) [Acinetobacter sp. ADP1] Length = 149 Score = 48.1 bits (113), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 28/100 (28%), Positives = 53/100 (53%), Gaps = 2/100 (2%) Query: 57 VESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELI 116 VE+ VDL ++ ++ V+ + + +D L+ L + + LD + + LR G EL Sbjct: 42 VENAMHKVDLGYYHELLTQVVAQHETLDTLLVPVLDRE--LNALDGVELATLRLGAYELR 99 Query: 117 ECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRK 156 + +P V++ E + +A F D K+IN VLD+++ + Sbjct: 100 DHLEIPYRVVLDEAIELAKHFGGADSHKYINGVLDRLASR 139 >gi|259507351|ref|ZP_05750251.1| N utilization substance protein B family protein (protein NusB) [Corynebacterium efficiens YS-314] gi|259165062|gb|EEW49616.1| N utilization substance protein B family protein (protein NusB) [Corynebacterium efficiens YS-314] Length = 167 Score = 47.8 bits (112), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 32/106 (30%), Positives = 47/106 (44%), Gaps = 5/106 (4%) Query: 67 EWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVI 126 E+ II+GV ID L+S + + W RL + ++LR E++ VPV Sbjct: 37 EYTEAIINGVAVELDTIDDLLSEHIADTWLLERLPSVDRAVLRVACWEMLYNPDVPVTTA 96 Query: 127 ISEYVCIAHDFFYGDEPKFINAVLDKVSRK-----EEIKRSGCVSA 167 + E V IA + +INA LD ++ K E G VS Sbjct: 97 VVEAVEIASQYSTDKAGAYINATLDNMASKVDELRERAANPGAVSG 142 >gi|283853206|ref|ZP_06370458.1| NusB antitermination factor [Desulfovibrio sp. FW1012B] gi|283571379|gb|EFC19387.1| NusB antitermination factor [Desulfovibrio sp. FW1012B] Length = 167 Score = 47.8 bits (112), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 26/86 (30%), Positives = 48/86 (55%), Gaps = 5/86 (5%) Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131 ++ GV ++ +D LI ++ W SR+ + +ILR + E++ +P+ V ++E + Sbjct: 72 LVQGVWQNQRELDALIVK-FSKNWKLSRIAKVELTILRLALYEILHRSDIPLRVALNEAI 130 Query: 132 CIAHDFFYGDEP--KFINAVLDKVSR 155 +A YGDE FIN +LD V++ Sbjct: 131 ELAKR--YGDENSRNFINGILDAVAK 154 >gi|254458717|ref|ZP_05072141.1| transcription antitermination factor NusB [Campylobacterales bacterium GD 1] gi|207084483|gb|EDZ61771.1| transcription antitermination factor NusB [Campylobacterales bacterium GD 1] Length = 134 Score = 47.8 bits (112), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 44/141 (31%), Positives = 59/141 (41%), Gaps = 21/141 (14%) Query: 19 ARLAAVQALYQIDIIGCS----TTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74 AR+A V LY D+ S T EI+ E + D L + Sbjct: 7 ARMAVVSLLYAYDLGNGSIADHTDEILEEKKIRNKQKDFAL---------------ALFE 51 Query: 75 GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134 GVM+ + D I L E W F RL I + LR E++ + V+I+E V I Sbjct: 52 GVMENLEACDKAIIEHLKE-WDFERLGAIERATLRLATYEIL-FGELDSAVVINEAVEIT 109 Query: 135 HDFFYGDEPKFINAVLDKVSR 155 F PKFIN VLD +S+ Sbjct: 110 KAFGTEQSPKFINGVLDAISK 130 >gi|323705298|ref|ZP_08116873.1| NusB antitermination factor [Thermoanaerobacterium xylanolyticum LX-11] gi|323535200|gb|EGB24976.1| NusB antitermination factor [Thermoanaerobacterium xylanolyticum LX-11] Length = 139 Score = 47.8 bits (112), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 39/141 (27%), Positives = 59/141 (41%), Gaps = 13/141 (9%) Query: 15 RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74 R AR V+ LYQ DI +I +F D + + E Y+ Sbjct: 2 NRTQAREWLVKLLYQYDISKLEPQKIFD-----KFLEDNDPEDEKDYIEN-------TFF 49 Query: 75 GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134 GV+ +ID I L + W +R+ I +I+R E++ +P V I+E V IA Sbjct: 50 GVIKNVDNIDEKIKKYL-KNWDINRIAKIDLAIMRCSFYEILYSTDIPSSVSINEAVEIA 108 Query: 135 HDFFYGDEPKFINAVLDKVSR 155 + P FIN +L + R Sbjct: 109 KKYSTEKSPAFINGILGNLVR 129 >gi|313905346|ref|ZP_07838712.1| NusB antitermination factor [Eubacterium cellulosolvens 6] gi|313469816|gb|EFR65152.1| NusB antitermination factor [Eubacterium cellulosolvens 6] Length = 170 Score = 47.8 bits (112), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 28/92 (30%), Positives = 45/92 (48%), Gaps = 1/92 (1%) Query: 65 DLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVE 124 D E+ R + + + ID I+ + W SR+ + SI+R V E+I VP Sbjct: 72 DEEYIRTKLAKITEALPEIDEQINKA-SRGWKTSRMPKVDLSIIRLAVYEMIHDEDVPTG 130 Query: 125 VIISEYVCIAHDFFYGDEPKFINAVLDKVSRK 156 V I+E V IA + + FIN +L +++R Sbjct: 131 VAINEAVEIAKHYGGEESATFINGILGQIARN 162 >gi|148272974|ref|YP_001222535.1| putative antitermination protein [Clavibacter michiganensis subsp. michiganensis NCPPB 382] gi|166215681|sp|A5CRY5|NUSB_CLAM3 RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|147830904|emb|CAN01848.1| putative antitermination protein [Clavibacter michiganensis subsp. michiganensis NCPPB 382] Length = 137 Score = 47.8 bits (112), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 40/139 (28%), Positives = 67/139 (48%), Gaps = 9/139 (6%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 R AR A+ LY DI G S ++ E R A E D ++ + ++ R I G Sbjct: 4 RTKARKRALDVLYVADIRGESIPATLA-VEQQRAAA--EPDRQASW-----QYAREIAEG 55 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135 + + ID LI + + W+ +R+ + +ILR G+ E++ VP V ISE V +A Sbjct: 56 FVAHQDEIDELIET-YSVNWTLARMPAVDRAILRIGIWEILFNADVPHGVAISESVDLAS 114 Query: 136 DFFYGDEPKFINAVLDKVS 154 + F+N +L +++ Sbjct: 115 SLSTDESASFVNGMLARIA 133 >gi|227873694|ref|ZP_03991927.1| conserved hypothetical protein [Oribacterium sinus F0268] gi|227840462|gb|EEJ50859.1| conserved hypothetical protein [Oribacterium sinus F0268] Length = 185 Score = 47.8 bits (112), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 25/82 (30%), Positives = 45/82 (54%), Gaps = 1/82 (1%) Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135 +++R H+D I+ +TE W+ SR+ ++LR + EL P +V+ +E V IA Sbjct: 67 ILERLPHLDERIN-AVTEGWTTSRMSKTDLTVLRLALYELEYQEETPDKVVFNEAVEIAK 125 Query: 136 DFFYGDEPKFINAVLDKVSRKE 157 + D F+N VL +++ K+ Sbjct: 126 KYGGADSGSFVNGVLARITGKQ 147 >gi|269926747|ref|YP_003323370.1| NusB antitermination factor [Thermobaculum terrenum ATCC BAA-798] gi|269790407|gb|ACZ42548.1| NusB antitermination factor [Thermobaculum terrenum ATCC BAA-798] Length = 153 Score = 47.8 bits (112), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 24/80 (30%), Positives = 43/80 (53%), Gaps = 1/80 (1%) Query: 75 GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134 GV ++ D LI+ T W+ ++ + +ILR V E++ + VP+ I+E V +A Sbjct: 60 GVWQNRKEYDSLITR-FTPTWTIDQMAKVDRNILRIAVHEMLRRNDVPIAAAINEAVELA 118 Query: 135 HDFFYGDEPKFINAVLDKVS 154 ++ PKF+N VL ++ Sbjct: 119 KEYGAEASPKFVNGVLGAIA 138 >gi|81428290|ref|YP_395290.1| transcription antitermination protein NusB [Lactobacillus sakei subsp. sakei 23K] gi|119390779|sp|Q38XV0|NUSB_LACSS RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|78609932|emb|CAI54979.1| Ribosomal RNA transcription antitermination protein NusB [Lactobacillus sakei subsp. sakei 23K] Length = 142 Score = 47.8 bits (112), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 35/133 (26%), Positives = 58/133 (43%), Gaps = 4/133 (3%) Query: 20 RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79 R AA Q L+ ++ + E+ Y+ D + D E V + ++ GV + Sbjct: 10 RQAAFQVLFTLN--ANQSLELEDAYQAV-LTMD-QFDAEEVTPVEVPAYLAFLVSGVTEN 65 Query: 80 KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139 + +D ++ L + W SRL ILR G+ E+ P +V ++E + +A F Sbjct: 66 QAALDAALTPYLKKGWQLSRLAKPDLIILRLGLFEMQNSTEAPAKVALNEALELAKQFTD 125 Query: 140 GDEPKFINAVLDK 152 FIN VL K Sbjct: 126 DQAKGFINGVLSK 138 >gi|162447338|ref|YP_001620470.1| transcription antitermination factor [Acholeplasma laidlawii PG-8A] gi|161985445|gb|ABX81094.1| transcription antitermination factor [Acholeplasma laidlawii PG-8A] Length = 126 Score = 47.8 bits (112), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 29/108 (26%), Positives = 64/108 (59%), Gaps = 12/108 (11%) Query: 59 SVYLHVDL-------EWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAG 111 S++ HVD + + +I+G++D +H+D LISS + + ++ RL+++ +I+R Sbjct: 19 SLHKHVDFLDYTLLEDASKEVINGMIDELEHVDFLISSTI-KNYTIDRLNLVDLAIIRVA 77 Query: 112 VLELIECHSVPVEVIISEYVCIAHDFFYGDEP---KFINAVLDKVSRK 156 V L++ P E++I+E + ++ ++ D+ KF N+++D + +K Sbjct: 78 VYALLKEID-PAEIVINEAIELSKEYTDLDDEKQHKFNNSLIDNIYKK 124 >gi|328955583|ref|YP_004372916.1| NusB antitermination factor [Coriobacterium glomerans PW2] gi|328455907|gb|AEB07101.1| NusB antitermination factor [Coriobacterium glomerans PW2] Length = 198 Score = 47.8 bits (112), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 42/158 (26%), Positives = 76/158 (48%), Gaps = 27/158 (17%) Query: 10 LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYL--HVDLE 67 +K++ R +AR A+Q L+Q + + CS E++ E YL LE Sbjct: 3 IKVNRGRTLARSQALQLLFQAEALMCSLDEVL----------------EGDYLLSQGPLE 46 Query: 68 WFRV-IIHGVMDRKQHIDLLISS--CLTEKWSFSRLDMILCSILRAGVLELIECHSVPVE 124 + + ++ G H+D + S+ +++ W SR+ ++LR + E+ P+E Sbjct: 47 PYALELVRGCY---AHLDRIDSALCAVSQNWELSRMPGSDRNLLRLAIYEM-RLADEPIE 102 Query: 125 --VIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIK 160 V+I+E V IA + + F+N VL ++SR EE+ Sbjct: 103 DAVVINEAVEIAKAYGTDESAGFVNGVLGEISRAEELP 140 >gi|126664007|ref|ZP_01735001.1| putative N utilization substance protein [Flavobacteria bacterium BAL38] gi|126623956|gb|EAZ94650.1| putative N utilization substance protein [Flavobacteria bacterium BAL38] Length = 302 Score = 47.8 bits (112), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 41/142 (28%), Positives = 69/142 (48%), Gaps = 16/142 (11%) Query: 31 DIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF------RVIIHGVMDRKQHID 84 D+ G +T I+ + + + DT L V VY D + F R +++ V K++ID Sbjct: 164 DLPGINTL-IVKQIKQLKSEKDT-LIVPKVYKDEDDKDFVKNLFRRTVLNEVELSKEYID 221 Query: 85 LLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPK 144 T W R+ I IL+ + EL++ S+P +V I+EY+ IA ++ Sbjct: 222 K------TPNWDVERIAEIDTIILKMAICELLKFPSIPTKVTINEYLEIAKEYSTPKSSI 275 Query: 145 FINAVLDKVSRKEEIKRSGCVS 166 FIN +LD + + E R G ++ Sbjct: 276 FINGILDNLVK--EFNRDGKLN 295 >gi|323705503|ref|ZP_08117078.1| sun protein [Thermoanaerobacterium xylanolyticum LX-11] gi|323535405|gb|EGB25181.1| sun protein [Thermoanaerobacterium xylanolyticum LX-11] Length = 447 Score = 47.8 bits (112), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 30/92 (32%), Positives = 50/92 (54%), Gaps = 2/92 (2%) Query: 64 VDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPV 123 +D + + I+ G ++RKQ +D +I C + K S ++D + IL G+ ++I VP Sbjct: 37 IDKSFIKEIVFGTIERKQTLDQIIDHC-SSKGS-KKIDNKILIILEMGLYQIIYMDKVPQ 94 Query: 124 EVIISEYVCIAHDFFYGDEPKFINAVLDKVSR 155 ISE V +A ++ KF+NAVL +R Sbjct: 95 YAAISEAVNLAKEYAGIHASKFVNAVLRNYAR 126 >gi|153952373|ref|YP_001398575.1| transcription antitermination protein NusB [Campylobacter jejuni subsp. doylei 269.97] gi|166215677|sp|A7H4Z5|NUSB_CAMJD RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|152939819|gb|ABS44560.1| transcription antitermination factor NusB [Campylobacter jejuni subsp. doylei 269.97] Length = 132 Score = 47.8 bits (112), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 25/78 (32%), Positives = 45/78 (57%), Gaps = 2/78 (2%) Query: 74 HGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCI 133 HG++D +ID ++S L + + L + +ILR G EL+ ++ P ++I+E + + Sbjct: 50 HGILDNLNNIDETLNSFLNDNQ-ITALGHVERAILRLGAYELLFTNT-PSAIVINEAIEL 107 Query: 134 AHDFFYGDEPKFINAVLD 151 A + + PKF+N VLD Sbjct: 108 AKELANDNSPKFMNGVLD 125 >gi|322382777|ref|ZP_08056621.1| transcription antitermination-like protein NusB [Paenibacillus larvae subsp. larvae B-3650] gi|321153246|gb|EFX45692.1| transcription antitermination-like protein NusB [Paenibacillus larvae subsp. larvae B-3650] Length = 133 Score = 47.8 bits (112), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 22/82 (26%), Positives = 43/82 (52%), Gaps = 1/82 (1%) Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131 ++ G + ++ ID ++S L + W RL + +LR E++ P +V+++E + Sbjct: 42 LVEGTLTNRERIDQILSEYL-KGWQMDRLSKVDREVLRMAAYEMLYRQDTPPKVVVNEAI 100 Query: 132 CIAHDFFYGDEPKFINAVLDKV 153 +A F + KF+N VL K+ Sbjct: 101 ELAKHFGTDESGKFVNGVLGKL 122 >gi|33594361|ref|NP_882005.1| transcription antitermination protein NusB [Bordetella pertussis Tohama I] gi|33595544|ref|NP_883187.1| transcription antitermination protein NusB [Bordetella parapertussis 12822] gi|33599942|ref|NP_887502.1| transcription antitermination protein NusB [Bordetella bronchiseptica RB50] gi|39931820|sp|Q7VTN3|NUSB_BORPE RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|39931833|sp|Q7W142|NUSB_BORPA RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|39931858|sp|Q7WNT2|NUSB_BORBR RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|33564436|emb|CAE43747.1| N utilization substance protein B [Bordetella pertussis Tohama I] gi|33565622|emb|CAE40268.1| N utilization substance protein B [Bordetella parapertussis] gi|33567539|emb|CAE31452.1| N utilization substance protein B [Bordetella bronchiseptica RB50] gi|332383772|gb|AEE68619.1| transcription antitermination protein NusB [Bordetella pertussis CS] Length = 154 Score = 47.8 bits (112), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 36/137 (26%), Positives = 61/137 (44%), Gaps = 21/137 (15%) Query: 24 VQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHI 83 +Q +Y + G T+ E + + A+ + D +WF+ ++HGV+ Sbjct: 19 LQGVYAWLLRGGEGTQDAGEIDAHLRDAED-------FSEADAQWFKTLLHGVLRE---- 67 Query: 84 DLLISSCLTEKW------SFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDF 137 + L E++ + L + IL G EL+ VP +V I+E V +A F Sbjct: 68 ----APVLRERFLPYIDRPLAELSPVEHGILLIGSFELMHHVEVPYKVAINEAVELAKSF 123 Query: 138 FYGDEPKFINAVLDKVS 154 D KF+N VLDK++ Sbjct: 124 GGTDGFKFVNGVLDKLA 140 >gi|224417753|ref|ZP_03655759.1| transcription antitermination protein NusB [Helicobacter canadensis MIT 98-5491] gi|253827096|ref|ZP_04869981.1| transcription antitermination protein NusB [Helicobacter canadensis MIT 98-5491] gi|313141294|ref|ZP_07803487.1| transcription antitermination factor NusB [Helicobacter canadensis MIT 98-5491] gi|253510502|gb|EES89161.1| transcription antitermination protein NusB [Helicobacter canadensis MIT 98-5491] gi|313130325|gb|EFR47942.1| transcription antitermination factor NusB [Helicobacter canadensis MIT 98-5491] Length = 184 Score = 47.8 bits (112), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 28/93 (30%), Positives = 54/93 (58%), Gaps = 2/93 (2%) Query: 67 EWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVI 126 ++ ++ +GV++ + +DL I+ L E W F+++ + +ILR GV E I +++ + Sbjct: 44 DFANLLFNGVIENLESLDLRIAHQL-ESWDFTKIGDMEKAILRLGVYE-IAFNNLDKAIA 101 Query: 127 ISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEI 159 I+E + +A F KFIN VLD +++ +I Sbjct: 102 INEALELAKTFGNEASAKFINGVLDNIAKNLQI 134 >gi|189501850|ref|YP_001957567.1| hypothetical protein Aasi_0422 [Candidatus Amoebophilus asiaticus 5a2] gi|189497291|gb|ACE05838.1| hypothetical protein Aasi_0422 [Candidatus Amoebophilus asiaticus 5a2] Length = 378 Score = 47.8 bits (112), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 26/84 (30%), Positives = 48/84 (57%), Gaps = 1/84 (1%) Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131 +I +++++ ID LI + + WS R ++ I++ G+ E+ S+P +V I+EYV Sbjct: 294 LIATALEQEKFIDNLIQQHI-KNWSIERTVLLDRIIIKMGLCEMKYFDSIPTKVAINEYV 352 Query: 132 CIAHDFFYGDEPKFINAVLDKVSR 155 +A + KFIN VLD +++ Sbjct: 353 DLAKKYSTAKSSKFINGVLDTIAK 376 >gi|227530526|ref|ZP_03960575.1| transcription antitermination protein NusB [Lactobacillus vaginalis ATCC 49540] gi|227349532|gb|EEJ39823.1| transcription antitermination protein NusB [Lactobacillus vaginalis ATCC 49540] Length = 136 Score = 47.8 bits (112), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 30/103 (29%), Positives = 48/103 (46%), Gaps = 2/103 (1%) Query: 58 ESVYLHVD--LEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLEL 115 ES+ H D + + ++ GV + ++ +D I+ L W +RL ILR + E+ Sbjct: 32 ESLPSHADKIPAYLQTLVEGVSEHQEKLDEQITQLLASGWEINRLAQTDLVILRLALYEI 91 Query: 116 IECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEE 158 VP V I+E + +A + KFIN L K R+ E Sbjct: 92 QFVDEVPTVVAINEALELAKTYSNDKSRKFINGALGKFERQLE 134 >gi|255531305|ref|YP_003091677.1| NusB/RsmB/TIM44 [Pedobacter heparinus DSM 2366] gi|255344289|gb|ACU03615.1| NusB/RsmB/TIM44 [Pedobacter heparinus DSM 2366] Length = 316 Score = 47.8 bits (112), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 25/98 (25%), Positives = 53/98 (54%), Gaps = 4/98 (4%) Query: 71 VIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEY 130 + +H + K++ L+ T+ W R+ ++ +++ + EL+ S+PV+V I+EY Sbjct: 216 LFVHTLKSDKEYQGLIAER--TKNWESERIALMDTILMKMAICELMNFPSIPVKVTINEY 273 Query: 131 VCIAHDFFYGDEPKFINAVLDKVSRKEEIKRSGCVSAI 168 + ++ D+ FIN +LDK+ ++KR+ + I Sbjct: 274 LDLSKDYSTPKSNSFINGILDKILG--DLKRTNSIHKI 309 >gi|196232646|ref|ZP_03131498.1| NusB antitermination factor [Chthoniobacter flavus Ellin428] gi|196223408|gb|EDY17926.1| NusB antitermination factor [Chthoniobacter flavus Ellin428] Length = 151 Score = 47.8 bits (112), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 43/154 (27%), Positives = 65/154 (42%), Gaps = 21/154 (13%) Query: 15 RRGIARLAAVQALYQIDIIGCSTTE------IISEYETYRFCADTELDVESVYLHVDLEW 68 +R R AAVQ LYQID+ G + + S T + E + L Sbjct: 3 KRREGREAAVQYLYQIDLSGETPVNAEQFWMLRSGPGKAPVAPKTRIFAEQLAL------ 56 Query: 69 FRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIIS 128 GV + ID I T + RL ++ +ILR + EL+ V +II+ Sbjct: 57 ------GVRKHLEEIDGYIKKY-TANYELDRLAVVDRNILRVAIYELLHSPDVAPVIIIN 109 Query: 129 EYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRS 162 E + +A F F+N +LD++ KEE+ R Sbjct: 110 EAIEVAKKFGTDKSGGFVNGILDRI--KEEVGRP 141 >gi|313893390|ref|ZP_07826962.1| ribosomal RNA small subunit methyltransferase B [Veillonella sp. oral taxon 158 str. F0412] gi|313442031|gb|EFR60451.1| ribosomal RNA small subunit methyltransferase B [Veillonella sp. oral taxon 158 str. F0412] Length = 451 Score = 47.8 bits (112), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 39/137 (28%), Positives = 63/137 (45%), Gaps = 14/137 (10%) Query: 20 RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79 RL AV+AL I+ G + EY +D +D +F +++GV+ R Sbjct: 13 RLLAVKALSDINRNGAYANIKLQEYLQKYHLSD-----------LDRRFFTELVYGVIRR 61 Query: 80 KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139 K ++D +I K +L ++ ILR G+ ++I VP ++E V +A Sbjct: 62 KNYLDAIIVHF--AKRPLKKLSSMVVEILRLGIYQIIYMDKVPESAAVNESVKLAKKLTR 119 Query: 140 GDEPKFINAVLDKVSRK 156 G F+NAVL V R+ Sbjct: 120 GLS-GFVNAVLRSVLRE 135 >gi|225377103|ref|ZP_03754324.1| hypothetical protein ROSEINA2194_02748 [Roseburia inulinivorans DSM 16841] gi|225211008|gb|EEG93362.1| hypothetical protein ROSEINA2194_02748 [Roseburia inulinivorans DSM 16841] Length = 130 Score = 47.8 bits (112), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 25/90 (27%), Positives = 48/90 (53%), Gaps = 1/90 (1%) Query: 65 DLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVE 124 D E+ H ++++ ID I+ ++E W R+ + +++R V E+ +PV+ Sbjct: 42 DKEYISNKFHNIVEKIDEIDAAINE-VSEGWKTRRMGKVDLTLIRLAVYEMKYEDDIPVK 100 Query: 125 VIISEYVCIAHDFFYGDEPKFINAVLDKVS 154 V I+E V +A + + P F+N VL K++ Sbjct: 101 VAINEAVELAKQYGTDESPAFVNGVLAKLA 130 >gi|86151316|ref|ZP_01069531.1| transcription antitermination factor NusB [Campylobacter jejuni subsp. jejuni 260.94] gi|86153756|ref|ZP_01071959.1| transcription antitermination factor NusB [Campylobacter jejuni subsp. jejuni HB93-13] gi|121612229|ref|YP_001000093.1| transcription antitermination protein NusB [Campylobacter jejuni subsp. jejuni 81-176] gi|157414677|ref|YP_001481933.1| transcription antitermination protein NusB [Campylobacter jejuni subsp. jejuni 81116] gi|283955805|ref|ZP_06373296.1| transcription antitermination factor NusB [Campylobacter jejuni subsp. jejuni 1336] gi|315123942|ref|YP_004065946.1| transcription antitermination factor NusB [Campylobacter jejuni subsp. jejuni ICDCCJ07001] gi|166215678|sp|A1VYA2|NUSB_CAMJJ RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|172047054|sp|A8FKG9|NUSB_CAMJ8 RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|85841663|gb|EAQ58910.1| transcription antitermination factor NusB [Campylobacter jejuni subsp. jejuni 260.94] gi|85842717|gb|EAQ59929.1| transcription antitermination factor NusB [Campylobacter jejuni subsp. jejuni HB93-13] gi|87250180|gb|EAQ73138.1| transcription antitermination factor NusB [Campylobacter jejuni subsp. jejuni 81-176] gi|157385641|gb|ABV51956.1| transcription termination protein [Campylobacter jejuni subsp. jejuni 81116] gi|283792760|gb|EFC31538.1| transcription antitermination factor NusB [Campylobacter jejuni subsp. jejuni 1336] gi|307747317|gb|ADN90587.1| N utilization substance protein B-like protein [Campylobacter jejuni subsp. jejuni M1] gi|315017664|gb|ADT65757.1| transcription antitermination factor NusB [Campylobacter jejuni subsp. jejuni ICDCCJ07001] gi|315932685|gb|EFV11615.1| transcription antitermination factor NusB [Campylobacter jejuni subsp. jejuni 327] Length = 132 Score = 47.8 bits (112), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 26/78 (33%), Positives = 44/78 (56%), Gaps = 2/78 (2%) Query: 74 HGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCI 133 HG++D +ID ++S L + + L + +ILR G EL+ + P ++I+E + + Sbjct: 50 HGILDNLNNIDETLNSFLNDNQ-ITALGHVERAILRLGAYELLFTDT-PSAIVINEAIEL 107 Query: 134 AHDFFYGDEPKFINAVLD 151 A + + PKFIN VLD Sbjct: 108 AKELANDNSPKFINGVLD 125 >gi|258654403|ref|YP_003203559.1| NusB antitermination factor [Nakamurella multipartita DSM 44233] gi|258557628|gb|ACV80570.1| NusB antitermination factor [Nakamurella multipartita DSM 44233] Length = 144 Score = 47.8 bits (112), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 23/83 (27%), Positives = 45/83 (54%), Gaps = 1/83 (1%) Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131 ++ G ++ + +D L++ + W+ R+ + +ILR V EL+ VP V+++E V Sbjct: 54 LVRGFVEHQDRVDTLLAEH-SRGWTVDRMPAVDRAILRIAVYELLYSTEVPPAVVVNEAV 112 Query: 132 CIAHDFFYGDEPKFINAVLDKVS 154 A D P+F+N VL +++ Sbjct: 113 DSAKILSTDDSPRFVNGVLGQIA 135 >gi|256825101|ref|YP_003149061.1| NusB antitermination factor [Kytococcus sedentarius DSM 20547] gi|256688494|gb|ACV06296.1| NusB antitermination factor [Kytococcus sedentarius DSM 20547] Length = 137 Score = 47.4 bits (111), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 25/84 (29%), Positives = 45/84 (53%), Gaps = 1/84 (1%) Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131 ++ GV+ I+ +SS ++ WS R+ + +ILR G E++ VP V ISE V Sbjct: 49 LVEGVVSHWASINDALSSW-SQGWSLERMPAVDRAILRLGTYEIVWAEDVPDAVAISEAV 107 Query: 132 CIAHDFFYGDEPKFINAVLDKVSR 155 +A + P F++ +L ++S+ Sbjct: 108 NLAAHLSTDESPNFVSGLLTRISQ 131 >gi|319760371|ref|YP_004124309.1| N utilization substance protein B-like protein [Candidatus Blochmannia vafer str. BVAF] gi|318039085|gb|ADV33635.1| N utilization substance protein B-like protein [Candidatus Blochmannia vafer str. BVAF] Length = 140 Score = 47.4 bits (111), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 36/144 (25%), Positives = 70/144 (48%), Gaps = 25/144 (17%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHV------DLEWF 69 R +ARL A+QALY +++F + +++E+ + + D+ +F Sbjct: 6 RRLARLCALQALY-----------------SWQFSKNDLIEIENYIVSIQNIQNFDISYF 48 Query: 70 RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISE 129 R + GV++ +D L+ L + + S+L + EL +C+ +P +V+++E Sbjct: 49 RELYIGVINCISDLDKLMIPYLFR--DLKTIGYVEYSVLLIALFELTQCYDIPYKVVMNE 106 Query: 130 YVCIAHDFFYGDEPKFINAVLDKV 153 + +A F KFIN VL+K+ Sbjct: 107 AIELAKIFGSEKSYKFINGVLNKI 130 >gi|168485566|ref|ZP_02710074.1| transcription antitermination factor NusB [Streptococcus pneumoniae CDC1087-00] gi|183571084|gb|EDT91612.1| transcription antitermination factor NusB [Streptococcus pneumoniae CDC1087-00] Length = 140 Score = 47.4 bits (111), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 25/87 (28%), Positives = 46/87 (52%), Gaps = 1/87 (1%) Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131 ++ G+ +K+ +D I+ L W+ RL ++ ++LR GV E I P V ++E + Sbjct: 55 LVSGIQAKKEELDKQITQHLKVGWTIERLTLVERNLLRLGVFE-ITSFDTPQLVAVNEAI 113 Query: 132 CIAHDFFYGDEPKFINAVLDKVSRKEE 158 +A DF +FIN +L + +E+ Sbjct: 114 ELAKDFSDQKSARFINGLLSQFVTEEQ 140 >gi|298209147|ref|YP_003717326.1| putative N utilization substance protein [Croceibacter atlanticus HTCC2559] gi|83849074|gb|EAP86943.1| putative N utilization substance protein [Croceibacter atlanticus HTCC2559] Length = 302 Score = 47.4 bits (111), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 24/80 (30%), Positives = 44/80 (55%), Gaps = 2/80 (2%) Query: 89 SCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINA 148 S T W R+ + +++ + E ++ S+PV+V I+EY+ IA ++ FIN Sbjct: 220 SKKTPNWDKERIAELDAVLMKMAICEFVKFPSIPVKVTINEYLEIAKEYSTPKSSIFING 279 Query: 149 VLDKVSRKEEIKRSGCVSAI 168 +LDK+S+ E K G ++ + Sbjct: 280 ILDKISK--EFKADGKLNKM 297 >gi|255038668|ref|YP_003089289.1| NusB antitermination factor [Dyadobacter fermentans DSM 18053] gi|254951424|gb|ACT96124.1| NusB antitermination factor [Dyadobacter fermentans DSM 18053] Length = 388 Score = 47.4 bits (111), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 24/75 (32%), Positives = 43/75 (57%), Gaps = 4/75 (5%) Query: 93 EKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLD- 151 + W R+ ++ IL+ + ELI +PV+V I+E++ IA + KF+N VLD Sbjct: 307 KNWELERIALVDLIILKTALAELIHFPGIPVKVTINEFIEIAKRYSTPKSGKFVNGVLDV 366 Query: 152 ---KVSRKEEIKRSG 163 K++++ I++SG Sbjct: 367 LSVKLAKEGVIRKSG 381 >gi|229817326|ref|ZP_04447608.1| hypothetical protein BIFANG_02588 [Bifidobacterium angulatum DSM 20098] gi|229785115|gb|EEP21229.1| hypothetical protein BIFANG_02588 [Bifidobacterium angulatum DSM 20098] Length = 137 Score = 47.4 bits (111), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 39/138 (28%), Positives = 60/138 (43%), Gaps = 12/138 (8%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 R AR A+ LY+ D G ++ E A T L E+ I+ G Sbjct: 3 RSTARKRALNTLYEADEKGQDILSLLEERIAV-PGAQTPLP----------EYAIEIVRG 51 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135 V + ++ ID + C T W SR+ ++ +ILR E++ VP V I E + +A Sbjct: 52 VAEHRRDIDEKLDECST-GWKISRMGVVDRNILRIAAWEIMYNDEVPDRVAIDEALGLAK 110 Query: 136 DFFYGDEPKFINAVLDKV 153 G+ P FI+ +L V Sbjct: 111 TLCDGESPAFIHGLLSAV 128 >gi|78357481|ref|YP_388930.1| transcription antitermination factor NusB [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] gi|119390767|sp|Q30YL1|NUSB_DESDG RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|78219886|gb|ABB39235.1| transcription antitermination factor NusB [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] Length = 154 Score = 47.4 bits (111), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 38/147 (25%), Positives = 64/147 (43%), Gaps = 9/147 (6%) Query: 13 SHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLH-VDLEWFRV 71 S RR +R A Q LY ++ + E +CA ++ H V W Sbjct: 8 SSRRS-SRALAFQVLYGLNFSPAKDLAQLQEA----YCASPDVSDRGGEAHPVGFAW--E 60 Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131 +I G ++ +D +I+ + W R+ I +ILR V E++ VP +V I+E + Sbjct: 61 LIEGTWTNQKALDEIITR-FAQNWRVERIGKIELTILRLAVYEMLYRADVPPKVAINEGI 119 Query: 132 CIAHDFFYGDEPKFINAVLDKVSRKEE 158 ++ F FIN +LD ++ E Sbjct: 120 ELSKQFGDDKSRNFINGILDAAAKALE 146 >gi|269956498|ref|YP_003326287.1| NusB antitermination factor [Xylanimonas cellulosilytica DSM 15894] gi|269305179|gb|ACZ30729.1| NusB antitermination factor [Xylanimonas cellulosilytica DSM 15894] Length = 138 Score = 47.4 bits (111), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 24/82 (29%), Positives = 43/82 (52%), Gaps = 1/82 (1%) Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131 I+ GV+ ++ ID L+ + + W+ R+ + ++LR G E++ VP V I E V Sbjct: 49 IVEGVVAHRERIDELLETY-SNGWTIERMPAVDRALLRIGAWEILFNDDVPDAVAIDEAV 107 Query: 132 CIAHDFFYGDEPKFINAVLDKV 153 +A D P F+N +L ++ Sbjct: 108 DLAAQLSTDDSPSFVNGLLGRI 129 >gi|332670495|ref|YP_004453503.1| NusB antitermination factor [Cellulomonas fimi ATCC 484] gi|332339533|gb|AEE46116.1| NusB antitermination factor [Cellulomonas fimi ATCC 484] Length = 138 Score = 47.4 bits (111), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 33/138 (23%), Positives = 63/138 (45%), Gaps = 12/138 (8%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 R AR A+ L++ D G ++++ A+ + VDL + G Sbjct: 4 RTKARKRALDVLFEADQRGLDPVTLLAQR-----VAEPGTEAALPQYSVDL------VEG 52 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135 V+ R++ ID L+++ W+ R+ + ++LR G E++ VP V + E V +A Sbjct: 53 VIARRERIDELLATH-AHGWTIERMPAVDRALLRLGTWEILFNDDVPDAVAVDEAVELAR 111 Query: 136 DFFYGDEPKFINAVLDKV 153 + P F+N +L ++ Sbjct: 112 SLSTDESPSFVNGLLGRI 129 >gi|283955145|ref|ZP_06372647.1| transcription antitermination factor NusB [Campylobacter jejuni subsp. jejuni 414] gi|283793358|gb|EFC32125.1| transcription antitermination factor NusB [Campylobacter jejuni subsp. jejuni 414] Length = 132 Score = 47.4 bits (111), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 26/78 (33%), Positives = 43/78 (55%), Gaps = 2/78 (2%) Query: 74 HGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCI 133 HG++D +ID ++S L + + L + +ILR G EL+ P ++I+E + + Sbjct: 50 HGILDNLSNIDETLNSFLNDNQ-ITALGHVERAILRLGAYELL-FSDTPSAIVINEAIEL 107 Query: 134 AHDFFYGDEPKFINAVLD 151 A + + PKFIN VLD Sbjct: 108 AKELANDNSPKFINGVLD 125 >gi|94264516|ref|ZP_01288303.1| NusB antitermination factor [delta proteobacterium MLMS-1] gi|94265524|ref|ZP_01289272.1| NusB antitermination factor [delta proteobacterium MLMS-1] gi|93453965|gb|EAT04311.1| NusB antitermination factor [delta proteobacterium MLMS-1] gi|93455075|gb|EAT05302.1| NusB antitermination factor [delta proteobacterium MLMS-1] Length = 135 Score = 47.4 bits (111), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 35/136 (25%), Positives = 56/136 (41%), Gaps = 12/136 (8%) Query: 19 ARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMD 78 AR A+QALYQ +++G + + C + E + L + R ++ G+ + Sbjct: 9 ARELALQALYQGEMLGVGALDTLPS-----LCENFEASRRA------LPYARELLAGI-E 56 Query: 79 RKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFF 138 W R+ I +++R V E+ VP V I E V +A + Sbjct: 57 AHGEAIDAAIDAAAANWRLDRMSYIDRNLMRIAVYEMRWRDEVPAGVAIDEAVELAKRYG 116 Query: 139 YGDEPKFINAVLDKVS 154 D P FIN +LD V Sbjct: 117 ADDSPAFINGILDAVG 132 >gi|255020761|ref|ZP_05292820.1| Transcription termination protein NusB [Acidithiobacillus caldus ATCC 51756] gi|254969823|gb|EET27326.1| Transcription termination protein NusB [Acidithiobacillus caldus ATCC 51756] Length = 147 Score = 47.4 bits (111), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 37/137 (27%), Positives = 63/137 (45%), Gaps = 10/137 (7%) Query: 18 IARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVM 77 +AR A +QALYQ + EI ++ L+ + + D +F I + Sbjct: 1 MAREALLQALYQWQLNPAPCGEIARQF----------LEDDERLVGADQRFFEDIWGRLC 50 Query: 78 DRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDF 137 + +D I+S + ++ + + +ILR G EL E P VII+E V ++ F Sbjct: 51 PVMETLDQAIASVILDRRWQDEVSEVERAILRLGAFELREERQTPYRVIINEAVELSKAF 110 Query: 138 FYGDEPKFINAVLDKVS 154 +FIN VLD+++ Sbjct: 111 GAEQGHRFINGVLDRLA 127 >gi|332286886|ref|YP_004418797.1| transcription antitermination protein NusB [Pusillimonas sp. T7-7] gi|330430839|gb|AEC22173.1| transcription antitermination protein NusB [Pusillimonas sp. T7-7] Length = 166 Score = 47.4 bits (111), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 33/106 (31%), Positives = 50/106 (47%), Gaps = 17/106 (16%) Query: 64 VDLEWFRVIIHGVMDRKQHIDLLISSCLTEKW------SFSRLDMILCSILRAGVLELIE 117 D WF+ ++HGV+ + L E++ L I IL G EL+ Sbjct: 64 ADATWFKTLLHGVLRE--------APALRERFMPHVDRPLEELSPIEHGILLIGSYELVH 115 Query: 118 CHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVS---RKEEIK 160 VP +V I+E V +A F D KF+N VLDK++ R +E++ Sbjct: 116 HIEVPYKVAINEAVELAKSFGGTDGFKFVNGVLDKMAADVRSQEVQ 161 >gi|223939373|ref|ZP_03631252.1| NusB antitermination factor [bacterium Ellin514] gi|223891977|gb|EEF58459.1| NusB antitermination factor [bacterium Ellin514] Length = 185 Score = 47.4 bits (111), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 28/94 (29%), Positives = 46/94 (48%), Gaps = 3/94 (3%) Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131 +I G ++ + D I E W R+ + +ILR + E++ +P V I+E V Sbjct: 93 LIRGALEHRDEADAQIKKY-AENWDLHRIAAVDRNILRLAIFEMLHREDIPPVVSINEAV 151 Query: 132 CIAHDFFYGDEPKFINAVLDKVSRKEEIKRSGCV 165 IA F + KF+N +LDK+ K E+ R + Sbjct: 152 DIAKKFSTYESGKFVNGILDKI--KGELMRPARI 183 >gi|296111669|ref|YP_003622051.1| transcription antitermination protein NusB [Leuconostoc kimchii IMSNU 11154] gi|295833201|gb|ADG41082.1| transcription antitermination protein NusB [Leuconostoc kimchii IMSNU 11154] Length = 138 Score = 47.4 bits (111), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 26/84 (30%), Positives = 46/84 (54%), Gaps = 1/84 (1%) Query: 67 EWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVI 126 ++ +++G++ K +D I++ L + W+ +RL+ ILR V EL+ + VP +V Sbjct: 44 DYLPRLVNGILGTKTELDEQIAAHLADGWAINRLNKADLIILRLAVYELLN-NLVPYKVA 102 Query: 127 ISEYVCIAHDFFYGDEPKFINAVL 150 I E + + F D KF+N VL Sbjct: 103 IDEALILTKTFSDEDSRKFVNGVL 126 >gi|302670343|ref|YP_003830303.1| transcription antitermination factor NusB [Butyrivibrio proteoclasticus B316] gi|302394816|gb|ADL33721.1| transcription antitermination factor NusB [Butyrivibrio proteoclasticus B316] Length = 133 Score = 47.4 bits (111), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 36/131 (27%), Positives = 63/131 (48%), Gaps = 9/131 (6%) Query: 25 QALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHID 84 Q L++++ S E++ + E + TE D+E + D ++ R + D+ + ID Sbjct: 12 QLLFRVEF--NSKEEMMEQEELFT----TEGDLE--FSKSDADYIRDKYEKIADKLEEID 63 Query: 85 LLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPK 144 I+ W SR+ + +I+R V E+ +VP V I+E V +A F P Sbjct: 64 KAINEKAV-GWETSRMAKVDLTIIRLAVYEIKFDETVPTGVAINEAVELAKKFGQDGSPA 122 Query: 145 FINAVLDKVSR 155 F+N VL K ++ Sbjct: 123 FVNGVLAKFAQ 133 >gi|254556506|ref|YP_003062923.1| transcription antitermination protein NusB [Lactobacillus plantarum JDM1] gi|308180449|ref|YP_003924577.1| transcription antitermination protein NusB [Lactobacillus plantarum subsp. plantarum ST-III] gi|254045433|gb|ACT62226.1| transcription antitermination protein NusB [Lactobacillus plantarum JDM1] gi|308045940|gb|ADN98483.1| transcription antitermination protein NusB [Lactobacillus plantarum subsp. plantarum ST-III] Length = 139 Score = 47.4 bits (111), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 26/90 (28%), Positives = 43/90 (47%) Query: 68 WFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVII 127 + ++ GV + + +D I L++KWS RL ILR EL VP +V + Sbjct: 48 YLSTLVTGVREHQAELDAQIQPYLSQKWSLDRLAKTDLIILRIAFFELQFVDDVPAKVAV 107 Query: 128 SEYVCIAHDFFYGDEPKFINAVLDKVSRKE 157 +E + + F KF++ VL KV + + Sbjct: 108 NEAIELTKAFSDDRSRKFVSGVLGKVVKNQ 137 >gi|322436555|ref|YP_004218767.1| NusB antitermination factor [Acidobacterium sp. MP5ACTX9] gi|321164282|gb|ADW69987.1| NusB antitermination factor [Acidobacterium sp. MP5ACTX9] Length = 140 Score = 47.4 bits (111), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 36/140 (25%), Positives = 70/140 (50%), Gaps = 11/140 (7%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 R +R +Q L+Q D+ G T E +++ + + T++D E+ DL +R+ Sbjct: 4 RRKSRELTMQMLFQGDL-GKQTPEQVTKL---FWSSVTDVDEETRGFAEDL--YRI---- 53 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135 R ID LI ++ W R+ ++ ++LR+ + E++ P ++I+E + +A Sbjct: 54 ATSRGTEIDALIEEH-SQNWRLERMPVVDRNLLRSAIAEMLGFPKTPHAIVINESLEVAR 112 Query: 136 DFFYGDEPKFINAVLDKVSR 155 + + F+N VLD V+R Sbjct: 113 RYAAPESIHFLNGVLDAVAR 132 >gi|256847385|ref|ZP_05552831.1| transcription antitermination factor NusB [Lactobacillus coleohominis 101-4-CHN] gi|256716049|gb|EEU31024.1| transcription antitermination factor NusB [Lactobacillus coleohominis 101-4-CHN] Length = 137 Score = 47.4 bits (111), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 25/84 (29%), Positives = 43/84 (51%) Query: 67 EWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVI 126 ++ ++ GV + + +D +IS+ LT W+ RL ILR + EL +P ++ Sbjct: 45 QYLDELVSGVQEHQADLDAIISNYLTNNWTIDRLARPNLVILRIALYELQYEKELPAPIV 104 Query: 127 ISEYVCIAHDFFYGDEPKFINAVL 150 I+E + +A F +FIN VL Sbjct: 105 INEALELAKSFSDDKSRRFINGVL 128 >gi|296117827|ref|ZP_06836410.1| n utilization substance protein B-like protein [Corynebacterium ammoniagenes DSM 20306] gi|295969058|gb|EFG82300.1| n utilization substance protein B-like protein [Corynebacterium ammoniagenes DSM 20306] Length = 220 Score = 47.0 bits (110), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 30/95 (31%), Positives = 48/95 (50%), Gaps = 3/95 (3%) Query: 67 EWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELI-ECHSVPVEV 125 E+ +V++ GV + ID I L E W R+ + +I+R V EL+ + + Sbjct: 34 EYTKVLVTGVAEELDTIDSTIERYLAEDWELYRIPAVDRAIMRVAVWELLYNSEEIDLAT 93 Query: 126 IISEYVCIAHDFFYGDEPKFINAVLDKV--SRKEE 158 +SE V +A ++ +INAVLD V SR E+ Sbjct: 94 AVSEGVELASEYSTDAAAPYINAVLDDVAHSRSED 128 >gi|317154514|ref|YP_004122562.1| transcription antitermination factor NusB [Desulfovibrio aespoeensis Aspo-2] gi|316944765|gb|ADU63816.1| transcription antitermination factor NusB [Desulfovibrio aespoeensis Aspo-2] Length = 151 Score = 47.0 bits (110), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 42/156 (26%), Positives = 71/156 (45%), Gaps = 15/156 (9%) Query: 3 IQDNKKDLKLSHRRGIARLAAVQALYQIDIIGC-STTEIISEYETYRFCADTELDVESVY 61 + NKK + RR + R A Q LY + +I + +E + E + Sbjct: 1 MSGNKKGNRPGIRR-VGRTLAFQVLYGTHFDDPKNPVDIGTAFERNPMVEEQESETAR-- 57 Query: 62 LHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSV 121 E+ R ++ GV ID I ++ W F R+ +I SILR + E++ + Sbjct: 58 -----EFARALVLGVDKNLARIDAAIGEH-SQHWKFDRIAVIELSILRLSLYEML-FTDI 110 Query: 122 PVEVIISEYVCIAHDFFYGDEPK--FINAVLDKVSR 155 PV+ I+E + ++ +GDE F+N +LD V+R Sbjct: 111 PVKAAINEAIELSK--LFGDEKSRGFVNGILDGVAR 144 >gi|296129685|ref|YP_003636935.1| NusB antitermination factor [Cellulomonas flavigena DSM 20109] gi|296021500|gb|ADG74736.1| NusB antitermination factor [Cellulomonas flavigena DSM 20109] Length = 138 Score = 47.0 bits (110), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 21/82 (25%), Positives = 46/82 (56%), Gaps = 1/82 (1%) Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131 ++ GV++ + ID L+++ + W+ +R+ + ++LR G E++ VP V + E V Sbjct: 49 LVEGVLEHAERIDELLATH-SHGWTVARMPAVDRALLRLGAWEILWNDDVPDAVAVDEAV 107 Query: 132 CIAHDFFYGDEPKFINAVLDKV 153 +A + + P F+N +L ++ Sbjct: 108 SLARELSTDESPAFVNGLLGRL 129 >gi|111024096|ref|YP_707068.1| transcription antitermination protein NusB [Rhodococcus jostii RHA1] gi|119390812|sp|Q0S0M6|NUSB_RHOSR RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|110823626|gb|ABG98910.1| N utilization substance protein B [Rhodococcus jostii RHA1] Length = 169 Score = 47.0 bits (110), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 26/82 (31%), Positives = 41/82 (50%), Gaps = 1/82 (1%) Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131 ++ GV + +D +I S L + W+ RL + +ILR V EL VP V + E V Sbjct: 59 VVTGVAENLDRLDEVIRSHL-QDWTLERLPAVDRAILRIAVWELFHATDVPPVVAVDEAV 117 Query: 132 CIAHDFFYGDEPKFINAVLDKV 153 +A + P F+N +L +V Sbjct: 118 ELAKQLSTDESPGFVNGILGQV 139 >gi|326336653|ref|ZP_08202821.1| NusB family protein [Capnocytophaga sp. oral taxon 338 str. F0234] gi|325691123|gb|EGD33094.1| NusB family protein [Capnocytophaga sp. oral taxon 338 str. F0234] Length = 310 Score = 47.0 bits (110), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 21/64 (32%), Positives = 38/64 (59%) Query: 92 TEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLD 151 T +W R+ I +++ G+ E ++ S+PV+V ++EYV IA ++ FIN +LD Sbjct: 231 TPQWDTERIAEIDAILIKMGITEFLKFPSIPVKVTLNEYVEIAKEYSTPKSSVFINGILD 290 Query: 152 KVSR 155 +S+ Sbjct: 291 TLSK 294 >gi|210633860|ref|ZP_03297875.1| hypothetical protein COLSTE_01792 [Collinsella stercoris DSM 13279] gi|210159029|gb|EEA90000.1| hypothetical protein COLSTE_01792 [Collinsella stercoris DSM 13279] Length = 216 Score = 47.0 bits (110), Expect = 9e-04, Method: Compositional matrix adjust. Identities = 38/153 (24%), Positives = 71/153 (46%), Gaps = 16/153 (10%) Query: 10 LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF 69 LK++ R +AR A+Q L+Q ++ G S ++++ T + ++ Sbjct: 4 LKVNRGRTLARSQALQILFQAEVRGESVGDVLAGDFTLSKGPLADYAIQ----------- 52 Query: 70 RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELI--ECHSVPVEVII 127 I GV ++ ID + + ++ WS R+ ++LRA V EL ++ V+I Sbjct: 53 --IARGVDANRERIDSALRA-VSANWSLERMPGADRNLLRAAVYELYFQVADTLDAAVVI 109 Query: 128 SEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIK 160 +E V IA + D F+N VL ++ R+ + Sbjct: 110 NEAVEIAKAYGTDDSAGFVNGVLGRIVRERHLP 142 >gi|227505027|ref|ZP_03935076.1| transcription antitermination protein NusB [Corynebacterium striatum ATCC 6940] gi|227198391|gb|EEI78439.1| transcription antitermination protein NusB [Corynebacterium striatum ATCC 6940] Length = 175 Score = 47.0 bits (110), Expect = 9e-04, Method: Compositional matrix adjust. Identities = 27/101 (26%), Positives = 48/101 (47%) Query: 67 EWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVI 126 E+ ++I+ G + ID I L+ W R+ + +I+R V E++ VP Sbjct: 59 EYTQIIVKGAAEELDVIDETIERYLSADWELHRIPAVDRAIMRVAVWEILFNEDVPNATA 118 Query: 127 ISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRSGCVSA 167 + E V +A ++ P +I+AVLD V + + V+A Sbjct: 119 LVEGVELASEYSNDQAPPYIHAVLDDVIQAQSADNPMSVAA 159 >gi|331084732|ref|ZP_08333820.1| transcription antitermination factor NusB [Lachnospiraceae bacterium 9_1_43BFAA] gi|330410826|gb|EGG90248.1| transcription antitermination factor NusB [Lachnospiraceae bacterium 9_1_43BFAA] Length = 134 Score = 47.0 bits (110), Expect = 9e-04, Method: Compositional matrix adjust. Identities = 28/87 (32%), Positives = 45/87 (51%), Gaps = 1/87 (1%) Query: 67 EWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVI 126 E+ R + ++ + ID I++ +T W SR+ + +ILR V E+ VP V Sbjct: 45 EYIRTKYAAIAEKVEMIDEKINASVT-GWKTSRMGKVDLTILRLAVYEIEWDEEVPQGVA 103 Query: 127 ISEYVCIAHDFFYGDEPKFINAVLDKV 153 I+E V +A + + P FIN VL K+ Sbjct: 104 INEAVELAKRYGGEESPSFINGVLGKI 130 >gi|331091280|ref|ZP_08340121.1| transcription antitermination factor NusB [Lachnospiraceae bacterium 2_1_46FAA] gi|330404727|gb|EGG84266.1| transcription antitermination factor NusB [Lachnospiraceae bacterium 2_1_46FAA] Length = 132 Score = 47.0 bits (110), Expect = 9e-04, Method: Compositional matrix adjust. Identities = 26/78 (33%), Positives = 44/78 (56%), Gaps = 1/78 (1%) Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135 V+++ + ID L+++ T W +R++ + +ILR EL VPV V I+E V +A Sbjct: 54 VVEKVEEIDELLNANAT-GWKTARMNKVDLTILRLATYELKWDEDVPVGVAINEAVELAK 112 Query: 136 DFFYGDEPKFINAVLDKV 153 + + P F+N VL K+ Sbjct: 113 KYSSEEGPSFVNGVLGKL 130 >gi|189347470|ref|YP_001943999.1| NusB antitermination factor [Chlorobium limicola DSM 245] gi|238692182|sp|B3EFQ8|NUSB_CHLL2 RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|189341617|gb|ACD91020.1| NusB antitermination factor [Chlorobium limicola DSM 245] Length = 164 Score = 47.0 bits (110), Expect = 9e-04, Method: Compositional matrix adjust. Identities = 43/162 (26%), Positives = 75/162 (46%), Gaps = 31/162 (19%) Query: 13 SHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVD------- 65 ++RR I R +QALY I++ DT++D + +L Sbjct: 3 TYRRQI-REKILQALYTIEL------------------RDTDIDSAAGWLLTQEILDDPN 43 Query: 66 -LEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVE 124 +++F ++I + ID I T W SR+ +I +ILR + E++ C +P + Sbjct: 44 AMKFFNMLIGSIKAHMSEIDCYIERH-TFNWDMSRIAIIDKNILRMALAEILYCEDIPPK 102 Query: 125 VIISEYVCIAHDFFYGDE-PKFINAVLDKVSRKEEIKRSGCV 165 V I+E + IA F ++ KF+N +LD + E+K G + Sbjct: 103 VSINEAIEIAKKFSSTEKSSKFVNGILDAIF--NELKTDGKI 142 >gi|331082309|ref|ZP_08331435.1| transcription antitermination factor NusB [Lachnospiraceae bacterium 6_1_63FAA] gi|330400795|gb|EGG80396.1| transcription antitermination factor NusB [Lachnospiraceae bacterium 6_1_63FAA] Length = 135 Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust. Identities = 25/77 (32%), Positives = 43/77 (55%), Gaps = 1/77 (1%) Query: 81 QHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYG 140 + ID+L++ + W R+ + +ILR V E+ VPV+V I+E V I+ F Sbjct: 59 EEIDVLLNEK-SAGWKTKRMSKVDLNILRLAVYEMKYDEDVPVKVAINEAVEISKSFGGD 117 Query: 141 DEPKFINAVLDKVSRKE 157 D F+N +L K++R++ Sbjct: 118 DSASFVNGILGKIARED 134 >gi|306834238|ref|ZP_07467357.1| transcription antitermination factor NusB [Streptococcus bovis ATCC 700338] gi|304423587|gb|EFM26734.1| transcription antitermination factor NusB [Streptococcus bovis ATCC 700338] Length = 142 Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust. Identities = 37/144 (25%), Positives = 62/144 (43%), Gaps = 11/144 (7%) Query: 11 KLSHRRGIARLAAVQALYQIDIIG--CSTTEIISEYETYRFCADTELDVESVYLHVDLEW 68 ++ R R A QAL+ ++ G + + Y+ D +DV L+ Sbjct: 4 NFTNSRRDLRERAFQALFSLEFGGEYLAAAQFAYTYDK-TIEEDDTIDVPVFLLN----- 57 Query: 69 FRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIIS 128 ++ GV D K ID I + L WS RL + ++LR G+ E+ P V ++ Sbjct: 58 ---LVKGVQDLKFEIDQQIETHLKSGWSLERLTLTDRALLRLGLYEIKYFEETPGRVAVN 114 Query: 129 EYVCIAHDFFYGDEPKFINAVLDK 152 E + IA + KF+N +L + Sbjct: 115 EIIEIAKKYSDDTSAKFVNGLLSQ 138 >gi|288817964|ref|YP_003432311.1| transcription antitermination factor [Hydrogenobacter thermophilus TK-6] gi|288787363|dbj|BAI69110.1| transcription antitermination factor [Hydrogenobacter thermophilus TK-6] gi|308751562|gb|ADO45045.1| NusB antitermination factor [Hydrogenobacter thermophilus TK-6] Length = 134 Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust. Identities = 39/139 (28%), Positives = 62/139 (44%), Gaps = 13/139 (9%) Query: 19 ARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMD 78 AR A LYQ DI +I EY +E + R ++ M Sbjct: 7 ARKDAFLILYQWDIKADKLEDITEEYIKSNLIKHSERR----------RYIRKLVRTYMQ 56 Query: 79 RKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFF 138 + ID LIS L+++W R+ I +ILR + E++ ++ +I +YV + + Sbjct: 57 KASEIDSLISE-LSQEWDIDRMGYIERNILRVALAEILFVGVKKLKPVIMDYVKLTLKYA 115 Query: 139 YGDEP-KFINAVLDKVSRK 156 G EP KF+N VL + + K Sbjct: 116 -GKEPAKFVNGVLGRAAPK 133 >gi|152991103|ref|YP_001356825.1| transcription antitermination protein NusB [Nitratiruptor sp. SB155-2] gi|166215704|sp|A6Q4Q9|NUSB_NITSB RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|151422964|dbj|BAF70468.1| transcription antitermination factor NusB [Nitratiruptor sp. SB155-2] Length = 139 Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust. Identities = 30/90 (33%), Positives = 45/90 (50%), Gaps = 2/90 (2%) Query: 67 EWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVI 126 E+ + G ++ ID +I L E W R+ I +ILR GV EL P ++ Sbjct: 44 EFALALFKGTVEHLDTIDEMIKKHL-ESWDMERVGHIERAILRLGVYELFYTDLDPA-IV 101 Query: 127 ISEYVCIAHDFFYGDEPKFINAVLDKVSRK 156 I+E V +A PKFIN VLD ++++ Sbjct: 102 INEAVELAKKLGTDQSPKFINGVLDAIAKE 131 >gi|75764701|ref|ZP_00744117.1| N utilization substance protein B [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|74487809|gb|EAO51609.1| N utilization substance protein B [Bacillus thuringiensis serovar israelensis ATCC 35646] Length = 107 Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust. Identities = 36/115 (31%), Positives = 54/115 (46%), Gaps = 14/115 (12%) Query: 15 RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74 +R AR A+QALYQ+DI G E E +T + E E+ ++ Sbjct: 2 KRRTARERAMQALYQMDITG--------ELEPKVAVENTLDEGEETN-----EFLESLVV 48 Query: 75 GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISE 129 G ++ K+ ID I L +KW R+ ++ SILR V E+ +P V I+E Sbjct: 49 GFVENKEAIDEAIRQNL-KKWKLERISIVDRSILRVAVYEMKYMEEIPHNVTINE 102 >gi|222151417|ref|YP_002560573.1| transcription termination factor [Macrococcus caseolyticus JCSC5402] gi|254772646|sp|B9E6Q9|NUSB_MACCJ RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|222120542|dbj|BAH17877.1| transcription termination factor [Macrococcus caseolyticus JCSC5402] Length = 130 Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust. Identities = 28/82 (34%), Positives = 47/82 (57%), Gaps = 2/82 (2%) Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131 ++HGV+ ++ +D I+ L + W+ RL+ I ILR EL+ + P +VI++E V Sbjct: 46 LVHGVISKQNELDDKITPHL-KSWALERLNKIDRIILRLSAFELLYTDA-PEKVIVNEAV 103 Query: 132 CIAHDFFYGDEPKFINAVLDKV 153 +A F + KFIN VL ++ Sbjct: 104 NLAKKFSDDESYKFINGVLSEI 125 >gi|325661675|ref|ZP_08150298.1| transcription antitermination factor NusB [Lachnospiraceae bacterium 4_1_37FAA] gi|325471928|gb|EGC75143.1| transcription antitermination factor NusB [Lachnospiraceae bacterium 4_1_37FAA] Length = 134 Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust. Identities = 28/87 (32%), Positives = 45/87 (51%), Gaps = 1/87 (1%) Query: 67 EWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVI 126 E+ R + ++ + ID I++ +T W SR+ + +ILR V E+ VP V Sbjct: 45 EYIRTKYAAIAEKVEMIDEKINASVT-GWKTSRMGKVDLTILRLAVYEIEWDEEVPQGVA 103 Query: 127 ISEYVCIAHDFFYGDEPKFINAVLDKV 153 I+E V +A + + P FIN VL K+ Sbjct: 104 INEAVELAKRYGGEESPSFINGVLGKI 130 >gi|256425201|ref|YP_003125854.1| NusB antitermination factor [Chitinophaga pinensis DSM 2588] gi|256040109|gb|ACU63653.1| NusB antitermination factor [Chitinophaga pinensis DSM 2588] Length = 309 Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust. Identities = 24/88 (27%), Positives = 48/88 (54%), Gaps = 1/88 (1%) Query: 66 LEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEV 125 LE+ R ++ V+D+K++ LI L + W R+ + ++ GV E + ++P +V Sbjct: 205 LEYARELLLTVLDKKEYCLELIKPKL-QNWDPERIAAVDMLLMEMGVCEFLYFPTIPTKV 263 Query: 126 IISEYVCIAHDFFYGDEPKFINAVLDKV 153 I+EY+ +A + +F+N +LD + Sbjct: 264 TINEYIDLAKAYSTPQSGQFVNGILDNI 291 >gi|242373824|ref|ZP_04819398.1| transcription antitermination protein NusB [Staphylococcus epidermidis M23864:W1] gi|242348378|gb|EES39980.1| transcription antitermination protein NusB [Staphylococcus epidermidis M23864:W1] Length = 128 Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust. Identities = 40/139 (28%), Positives = 63/139 (45%), Gaps = 13/139 (9%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 R +R+ A Q L+Q+++ T E F D +++ ++H W ++ G Sbjct: 3 RKESRIQAFQTLFQLEMKDTDLTIT----EAINFIKDDHPELDFDFIH----W---LVTG 51 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135 V D + +D I L + WS RL ILR E++ P +VII+E V + Sbjct: 52 VKDHESVLDEKIKPHLKD-WSIERLLKSDRIILRMATFEMLHS-DTPEKVIINEAVELTK 109 Query: 136 DFFYGDEPKFINAVLDKVS 154 F D KFIN VL ++ Sbjct: 110 QFSDDDHYKFINGVLSNIN 128 >gi|116670816|ref|YP_831749.1| NusB antitermination factor [Arthrobacter sp. FB24] gi|166215661|sp|A0JX79|NUSB_ARTS2 RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|116610925|gb|ABK03649.1| NusB antitermination factor [Arthrobacter sp. FB24] Length = 136 Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust. Identities = 25/84 (29%), Positives = 43/84 (51%), Gaps = 1/84 (1%) Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131 I+ GV+ + ID + + ++ W+ R+ + ILR G EL+ VP V +SE V Sbjct: 47 IVEGVVSHQAAIDEFLETY-SQGWTLERMPSVDRIILRIGTWELLYNDDVPDGVAVSEAV 105 Query: 132 CIAHDFFYGDEPKFINAVLDKVSR 155 +A + P FIN +L ++ + Sbjct: 106 ALAKTLSTDESPSFINGLLGRLQQ 129 >gi|260222860|emb|CBA32850.1| N utilization substance protein B homolog [Curvibacter putative symbiont of Hydra magnipapillata] Length = 177 Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust. Identities = 37/139 (26%), Positives = 67/139 (48%), Gaps = 13/139 (9%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 R AR A+Q LYQ ++G + + I + T ++ D +H D ++HG Sbjct: 35 RTRAREFALQGLYQ-SLVGRNAVDDIDPF-TRDLAGFSKADA----VHFD-----ALLHG 83 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135 + + +D LI+ L S + I +I+ G E+ C VP V+++E + +A Sbjct: 84 CVAEAEALDALITPALDR--PMSEISPIEHAIMWIGAYEMKHCLDVPWRVVLNECIELAK 141 Query: 136 DFFYGDEPKFINAVLDKVS 154 +F D K++N VL+ ++ Sbjct: 142 EFGGTDGHKYVNGVLNGIA 160 >gi|169794295|ref|YP_001712088.1| transcription antitermination protein NusB [Acinetobacter baumannii AYE] gi|184159907|ref|YP_001848246.1| transcription antitermination protein NusB [Acinetobacter baumannii ACICU] gi|213159130|ref|YP_002321128.1| transcription antitermination factor NusB [Acinetobacter baumannii AB0057] gi|215481852|ref|YP_002324034.1| transcription antitermination factor NusB [Acinetobacter baumannii AB307-0294] gi|239502815|ref|ZP_04662125.1| transcription antitermination protein NusB [Acinetobacter baumannii AB900] gi|260557847|ref|ZP_05830060.1| transcription antitermination factor NusB [Acinetobacter baumannii ATCC 19606] gi|332850100|ref|ZP_08432487.1| transcription antitermination factor NusB [Acinetobacter baumannii 6013150] gi|332871452|ref|ZP_08439969.1| transcription antitermination factor NusB [Acinetobacter baumannii 6013113] gi|332873342|ref|ZP_08441296.1| transcription antitermination factor NusB [Acinetobacter baumannii 6014059] gi|226737436|sp|B7GUW2|NUSB_ACIB3 RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|226737437|sp|B7I252|NUSB_ACIB5 RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|238685542|sp|A3MA35|NUSB_ACIBT RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|238688080|sp|B0V9X4|NUSB_ACIBY RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|238691018|sp|B2I2B2|NUSB_ACIBC RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|169147222|emb|CAM85081.1| transcription termination, L factor (N utilization substance protein B) [Acinetobacter baumannii AYE] gi|183211501|gb|ACC58899.1| Transcription termination factor [Acinetobacter baumannii ACICU] gi|193078716|gb|ABO13779.2| transcription termination L factor [Acinetobacter baumannii ATCC 17978] gi|213058290|gb|ACJ43192.1| transcription antitermination factor NusB [Acinetobacter baumannii AB0057] gi|213988308|gb|ACJ58607.1| transcription antitermination factor NusB [Acinetobacter baumannii AB307-0294] gi|260408638|gb|EEX01943.1| transcription antitermination factor NusB [Acinetobacter baumannii ATCC 19606] gi|322509823|gb|ADX05277.1| nusB [Acinetobacter baumannii 1656-2] gi|323519833|gb|ADX94214.1| transcription antitermination protein NusB [Acinetobacter baumannii TCDC-AB0715] gi|332730949|gb|EGJ62255.1| transcription antitermination factor NusB [Acinetobacter baumannii 6013150] gi|332731489|gb|EGJ62779.1| transcription antitermination factor NusB [Acinetobacter baumannii 6013113] gi|332738405|gb|EGJ69278.1| transcription antitermination factor NusB [Acinetobacter baumannii 6014059] Length = 149 Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust. Identities = 28/98 (28%), Positives = 50/98 (51%), Gaps = 2/98 (2%) Query: 57 VESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELI 116 E+ VDL ++ ++ V+ + + +D L+ L + LD + + LR G EL Sbjct: 42 AENAMHKVDLNYYHELLTQVIAQHEDLDALLIPVLDRE--IDALDGVELATLRLGAYELR 99 Query: 117 ECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVS 154 + +P V++ E + +A F D K+IN VLD++S Sbjct: 100 DHLEIPYRVVLDEAIELAKHFGGADSHKYINGVLDRLS 137 >gi|229825477|ref|ZP_04451546.1| hypothetical protein GCWU000182_00837 [Abiotrophia defectiva ATCC 49176] gi|229790040|gb|EEP26154.1| hypothetical protein GCWU000182_00837 [Abiotrophia defectiva ATCC 49176] Length = 138 Score = 46.6 bits (109), Expect = 0.001, Method: Compositional matrix adjust. Identities = 38/124 (30%), Positives = 61/124 (49%), Gaps = 12/124 (9%) Query: 38 TEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSF 97 E ++E+Y ++ + D E + W RV+ + ++K +D LI ++KW Sbjct: 23 AEWKEQFESYADYSEIKEDREGL-------WQRVM--ALEEKKAEVDSLIDGA-SKKWRI 72 Query: 98 SRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDE-PKFINAVLDKVSRK 156 SRL +LR V E+ +P +V ++E V +A + GDE P F+N VL K Sbjct: 73 SRLSKTDLMLLRVAVYEIKFDSEIPDKVSVNEAVELAK-IYGGDESPAFVNGVLAKFMSG 131 Query: 157 EEIK 160 EE K Sbjct: 132 EEAK 135 >gi|303228540|ref|ZP_07315368.1| ribosomal RNA small subunit methyltransferase B [Veillonella atypica ACS-134-V-Col7a] gi|302516787|gb|EFL58701.1| ribosomal RNA small subunit methyltransferase B [Veillonella atypica ACS-134-V-Col7a] Length = 452 Score = 46.6 bits (109), Expect = 0.001, Method: Compositional matrix adjust. Identities = 36/139 (25%), Positives = 66/139 (47%), Gaps = 14/139 (10%) Query: 20 RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79 RL AV+AL I+ G ++ +Y +D +D +F +++GV+ R Sbjct: 14 RLLAVKALSDINRKGAYANIVLQDYILKYNLSD-----------LDRRFFTELVYGVVRR 62 Query: 80 KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139 + ++D++I +L ++ ILR GV ++I VP ++E V +A Sbjct: 63 RNYLDVIIVHFANR--PIKKLSSMVVEILRLGVYQIIYMDKVPESAAVNESVKLAKKLTR 120 Query: 140 GDEPKFINAVLDKVSRKEE 158 G F+NA+L V R+++ Sbjct: 121 GLS-GFVNAILRSVIREQD 138 >gi|22096363|sp|P74395|NUSB_SYNY3 RecName: Full=N utilization substance protein B homolog; Short=Protein nusB Length = 221 Score = 46.6 bits (109), Expect = 0.001, Method: Compositional matrix adjust. Identities = 31/86 (36%), Positives = 46/86 (53%), Gaps = 2/86 (2%) Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131 +I V R+Q ID + + + W SRL I ILR + EL + VP +V I+E V Sbjct: 126 LIGTVCRRRQQIDEQLQEAMVD-WQLSRLAKIDQDILRLAIAEL-DYLGVPQKVAINEAV 183 Query: 132 CIAHDFFYGDEPKFINAVLDKVSRKE 157 +A + D +FIN VL +V+ K+ Sbjct: 184 ELAKRYSGQDGHRFINGVLRRVTEKK 209 >gi|288799718|ref|ZP_06405177.1| NusB family protein [Prevotella sp. oral taxon 299 str. F0039] gi|288332966|gb|EFC71445.1| NusB family protein [Prevotella sp. oral taxon 299 str. F0039] Length = 322 Score = 46.6 bits (109), Expect = 0.001, Method: Compositional matrix adjust. Identities = 22/67 (32%), Positives = 37/67 (55%) Query: 89 SCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINA 148 S + W FSRL + I++ + E++ S+PV V I+EYV +A + +IN Sbjct: 230 SETSRNWDFSRLAYMDVVIMQIAIAEMLTFPSIPVSVTINEYVNLAKLYSTSRSGGYING 289 Query: 149 VLDKVSR 155 +LD ++R Sbjct: 290 MLDAIAR 296 >gi|254797209|ref|YP_003082050.1| putative N utilization substance protein B [Neorickettsia risticii str. Illinois] gi|254590448|gb|ACT69810.1| putative N utilization substance protein B [Neorickettsia risticii str. Illinois] Length = 141 Score = 46.6 bits (109), Expect = 0.001, Method: Compositional matrix adjust. Identities = 24/69 (34%), Positives = 39/69 (56%) Query: 86 LISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKF 145 LI L+E+W R+D + S+LR + EL + ++I+EYV + F E F Sbjct: 67 LIGRFLSEEWEIDRMDNLKLSLLRVAISELRLSNIAQKNLVINEYVSLGRLFLPVKEVGF 126 Query: 146 INAVLDKVS 154 INA+L+K++ Sbjct: 127 INAILEKLT 135 >gi|114566114|ref|YP_753268.1| hypothetical protein Swol_0564 [Syntrophomonas wolfei subsp. wolfei str. Goettingen] gi|119390841|sp|Q0AZF7|NUSB_SYNWW RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|114337049|gb|ABI67897.1| NusB antitermination factor [Syntrophomonas wolfei subsp. wolfei str. Goettingen] Length = 134 Score = 46.6 bits (109), Expect = 0.001, Method: Compositional matrix adjust. Identities = 27/84 (32%), Positives = 45/84 (53%), Gaps = 5/84 (5%) Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131 +I G ++++ ID +I+S E W+ R+ + +I+R E++ V I E + Sbjct: 48 LIQGTLEKQAEIDQMIASYSRE-WALDRMSSVDRNIMRVAAYEILYLEDSQAVVAIDEAI 106 Query: 132 CIAHDFFYGDEPK--FINAVLDKV 153 IA YGDE F+NA+LDK+ Sbjct: 107 EIAKK--YGDEGSGSFVNAILDKI 128 >gi|34497846|ref|NP_902061.1| transcription antitermination protein NusB [Chromobacterium violaceum ATCC 12472] gi|39931749|sp|Q7NVF2|NUSB_CHRVO RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|34103702|gb|AAQ60063.1| N utilization substance protein B [Chromobacterium violaceum ATCC 12472] Length = 149 Score = 46.6 bits (109), Expect = 0.001, Method: Compositional matrix adjust. Identities = 41/149 (27%), Positives = 69/149 (46%), Gaps = 22/149 (14%) Query: 10 LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF 69 +K + RR AR AVQ +Y+ ++ +I ++ L + D F Sbjct: 1 MKTARRR--AREFAVQGIYEWELNPDRPASLIEKH----------LRENEYFAKADEALF 48 Query: 70 RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRA----GVLELIECHSVPVEV 125 R I++GV+ + ++LL S ++ + R + + + RA LEL + P V Sbjct: 49 RSILYGVL---KDVELL--SAQVGRY-YERAEDEVSPVERAVLLMAALELTQSPETPYPV 102 Query: 126 IISEYVCIAHDFFYGDEPKFINAVLDKVS 154 II+E + I F D KF+N VLDK++ Sbjct: 103 IINEAIEITKTFGGTDGHKFVNGVLDKLA 131 >gi|288906084|ref|YP_003431306.1| antitermination protein NusB [Streptococcus gallolyticus UCN34] gi|306832123|ref|ZP_07465277.1| transcription antitermination factor NusB [Streptococcus gallolyticus subsp. gallolyticus TX20005] gi|325979049|ref|YP_004288765.1| transcription antitermination factor NusB [Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069] gi|288732810|emb|CBI14386.1| putative antitermination protein NusB [Streptococcus gallolyticus UCN34] gi|304425562|gb|EFM28680.1| transcription antitermination factor NusB [Streptococcus gallolyticus subsp. gallolyticus TX20005] gi|325178977|emb|CBZ49021.1| transcription antitermination factor NusB [Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069] Length = 142 Score = 46.6 bits (109), Expect = 0.001, Method: Compositional matrix adjust. Identities = 36/144 (25%), Positives = 62/144 (43%), Gaps = 11/144 (7%) Query: 11 KLSHRRGIARLAAVQALYQIDIIG--CSTTEIISEYETYRFCADTELDVESVYLHVDLEW 68 ++ R R A QAL+ ++ G + + Y+ D +DV L+ Sbjct: 4 NFTNSRRDLRERAFQALFSLEFGGEYLAAAQFAYTYDK-TIEEDDTIDVPVFLLN----- 57 Query: 69 FRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIIS 128 ++ GV D + ID I + L WS RL + ++LR G+ E+ P V ++ Sbjct: 58 ---LVKGVQDFQSEIDQQIETHLKSGWSLERLTLTDRTLLRLGLYEIKYFEETPGRVAVN 114 Query: 129 EYVCIAHDFFYGDEPKFINAVLDK 152 E + IA + KF+N +L + Sbjct: 115 EIIEIAKKYSDDTSAKFVNGLLSQ 138 >gi|149279327|ref|ZP_01885458.1| putative N utilization substance protein [Pedobacter sp. BAL39] gi|149229853|gb|EDM35241.1| putative N utilization substance protein [Pedobacter sp. BAL39] Length = 297 Score = 46.6 bits (109), Expect = 0.001, Method: Compositional matrix adjust. Identities = 22/77 (28%), Positives = 44/77 (57%), Gaps = 2/77 (2%) Query: 92 TEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLD 151 T+ W R+ ++ +++ + EL+ S+PV+V I+EY+ ++ D+ FIN +LD Sbjct: 216 TKNWESERIALMDTILMKMAICELMNFPSIPVKVTINEYLDLSKDYSTPKSNSFINGILD 275 Query: 152 KVSRKEEIKRSGCVSAI 168 K+ ++KR+ + I Sbjct: 276 KILG--DLKRTDSIHKI 290 >gi|228473251|ref|ZP_04058006.1| NusB family protein [Capnocytophaga gingivalis ATCC 33624] gi|228275401|gb|EEK14193.1| NusB family protein [Capnocytophaga gingivalis ATCC 33624] Length = 310 Score = 46.6 bits (109), Expect = 0.001, Method: Compositional matrix adjust. Identities = 22/77 (28%), Positives = 44/77 (57%), Gaps = 2/77 (2%) Query: 92 TEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLD 151 T KW R+ + +++ G+ E ++ S+PV+V ++EYV IA ++ F+N +LD Sbjct: 231 TPKWDADRIAELDAIMIKMGIAEFLKFPSIPVKVTLNEYVEIAKEYSTPKSSVFVNGILD 290 Query: 152 KVSRKEEIKRSGCVSAI 168 +S+ + ++ G + I Sbjct: 291 TLSK--DFQQEGKLKKI 305 >gi|119962399|ref|YP_948012.1| transcription antitermination factor NusB [Arthrobacter aurescens TC1] gi|166215660|sp|A1R700|NUSB_ARTAT RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|119949258|gb|ABM08169.1| transcription antitermination factor NusB [Arthrobacter aurescens TC1] Length = 136 Score = 46.6 bits (109), Expect = 0.001, Method: Compositional matrix adjust. Identities = 25/84 (29%), Positives = 42/84 (50%), Gaps = 1/84 (1%) Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131 I+ GV+ + ID + + + W+ R+ + ILR G EL+ VP V +SE V Sbjct: 47 IVEGVVSMQATIDEFLQTY-AQGWTLERMPSVDRIILRIGAWELLYNDEVPDGVAVSEAV 105 Query: 132 CIAHDFFYGDEPKFINAVLDKVSR 155 +A + P FIN +L ++ + Sbjct: 106 ALAKTMSTDESPAFINGLLGRLQK 129 >gi|325107333|ref|YP_004268401.1| NusB antitermination factor [Planctomyces brasiliensis DSM 5305] gi|324967601|gb|ADY58379.1| NusB antitermination factor [Planctomyces brasiliensis DSM 5305] Length = 137 Score = 46.6 bits (109), Expect = 0.001, Method: Compositional matrix adjust. Identities = 25/84 (29%), Positives = 45/84 (53%), Gaps = 2/84 (2%) Query: 71 VIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEY 130 + G M+ ++ ID IS + + W+ R+ + ++LR G EL + H P V+I E Sbjct: 48 TLFAGTMEHRETIDDRISK-VAKNWTLKRMAVTDRNLLRLGCFEL-DYHDTPHTVVIDEI 105 Query: 131 VCIAHDFFYGDEPKFINAVLDKVS 154 + +A F + F+N +LDK++ Sbjct: 106 IELAKKFGAENSSSFVNGILDKLA 129 >gi|169634846|ref|YP_001708582.1| transcription antitermination protein NusB [Acinetobacter baumannii SDF] gi|238688150|sp|B0VPT9|NUSB_ACIBS RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|169153638|emb|CAP02830.1| transcription termination, L factor (N utilization substance protein B) [Acinetobacter baumannii] Length = 149 Score = 46.6 bits (109), Expect = 0.001, Method: Compositional matrix adjust. Identities = 28/98 (28%), Positives = 50/98 (51%), Gaps = 2/98 (2%) Query: 57 VESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELI 116 E+ VDL ++ ++ V+ + + +D L+ L + LD + + LR G EL Sbjct: 42 AENAMHKVDLNYYHELLTQVIAQHEDLDALLIPVLDRE--IDALDGVELATLRLGAYELR 99 Query: 117 ECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVS 154 + +P V++ E + +A F D K+IN VLD++S Sbjct: 100 DHLEIPYRVVLDEAIELAKHFGGADSHKYINGVLDRLS 137 >gi|126643397|ref|YP_001086381.1| transcription antitermination protein NusB [Acinetobacter baumannii ATCC 17978] Length = 122 Score = 46.6 bits (109), Expect = 0.001, Method: Compositional matrix adjust. Identities = 28/98 (28%), Positives = 50/98 (51%), Gaps = 2/98 (2%) Query: 57 VESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELI 116 E+ VDL ++ ++ V+ + + +D L+ L + LD + + LR G EL Sbjct: 15 AENAMHKVDLNYYHELLTQVIAQHEDLDALLIPVLDRE--IDALDGVELATLRLGAYELR 72 Query: 117 ECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVS 154 + +P V++ E + +A F D K+IN VLD++S Sbjct: 73 DHLEIPYRVVLDEAIELAKHFGGADSHKYINGVLDRLS 110 >gi|294786532|ref|ZP_06751786.1| transcription antitermination factor NusB [Parascardovia denticolens F0305] gi|315226110|ref|ZP_07867898.1| transcription antitermination factor NusB [Parascardovia denticolens DSM 10105] gi|294485365|gb|EFG32999.1| transcription antitermination factor NusB [Parascardovia denticolens F0305] gi|315120242|gb|EFT83374.1| transcription antitermination factor NusB [Parascardovia denticolens DSM 10105] Length = 209 Score = 46.6 bits (109), Expect = 0.001, Method: Compositional matrix adjust. Identities = 35/147 (23%), Positives = 64/147 (43%), Gaps = 12/147 (8%) Query: 12 LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71 ++ R AR A+ LY+ D G +++ E Y A T L + + Sbjct: 1 MARARTTARKRALNTLYEADEKGEEIVDLLDERLAY-PGAQTPLPP----------YAQE 49 Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131 I+ GV ++ +D + +E W R+ ++ +I R E+I VP +V I E + Sbjct: 50 IVRGVASHRRTVDKALEEH-SEGWDVKRMHVLDRNIARMAAWEIIYNDDVPAKVAIDEAL 108 Query: 132 CIAHDFFYGDEPKFINAVLDKVSRKEE 158 +A + + P F++ +L + R E Sbjct: 109 TLAKAYSDDEAPHFLHGLLSAIERDAE 135 >gi|297621030|ref|YP_003709167.1| nusB putative transcription antitermination factor, NusB family [Waddlia chondrophila WSU 86-1044] gi|297376331|gb|ADI38161.1| nusB putative transcription antitermination factor, NusB family [Waddlia chondrophila WSU 86-1044] Length = 145 Score = 46.6 bits (109), Expect = 0.001, Method: Compositional matrix adjust. Identities = 23/81 (28%), Positives = 46/81 (56%), Gaps = 1/81 (1%) Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135 + R++ +D LI + ++F R+ + +ILR G+ EL+ +P +V I+E + + Sbjct: 57 IRGREKELDQLIGES-AKSYAFDRIPRVERNILRLGIYELLFDEQIPPKVAIAEAIRLGR 115 Query: 136 DFFYGDEPKFINAVLDKVSRK 156 F + FINA++D++ +K Sbjct: 116 KFSTPESATFINAIMDELYQK 136 >gi|78776604|ref|YP_392919.1| transcription antitermination protein NusB [Sulfurimonas denitrificans DSM 1251] gi|119390845|sp|Q30TJ7|NUSB_SULDN RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|78497144|gb|ABB43684.1| NusB antitermination factor [Sulfurimonas denitrificans DSM 1251] Length = 132 Score = 46.6 bits (109), Expect = 0.001, Method: Compositional matrix adjust. Identities = 44/144 (30%), Positives = 59/144 (40%), Gaps = 21/144 (14%) Query: 16 RGIARLAAVQALYQIDI----IGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71 R AR+A V LY D+ I T EI+ E + D L Sbjct: 4 RHQARMAVVSLLYAFDLGNGNIAEHTDEILEEKKIRNKQKDFAL---------------T 48 Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131 + GVM +D I L + W F RL I + LR E++ + V+I+E V Sbjct: 49 LYEGVMANITPVDEAIVKHLKD-WDFERLGAIERATLRLATYEIL-FGELDSAVVINEAV 106 Query: 132 CIAHDFFYGDEPKFINAVLDKVSR 155 I F PKFIN VLD +S+ Sbjct: 107 EITKAFGTEQSPKFINGVLDAISK 130 >gi|229552487|ref|ZP_04441212.1| transcription antitermination protein NusB [Lactobacillus rhamnosus LMS2-1] gi|229314039|gb|EEN80012.1| transcription antitermination protein NusB [Lactobacillus rhamnosus LMS2-1] Length = 139 Score = 46.6 bits (109), Expect = 0.001, Method: Compositional matrix adjust. Identities = 28/105 (26%), Positives = 50/105 (47%), Gaps = 6/105 (5%) Query: 52 DTELDVESVYLHV---DLE---WFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILC 105 + E D +VY V D E + ++ GV+ + +D ++ L + W+ SRL Sbjct: 25 NPEADKNAVYAEVLPKDTEVPSYLTALVEGVLANQAALDAALTPQLKKGWTLSRLTKPDL 84 Query: 106 SILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVL 150 ILR G+ E+ ++P I+E + +A + KF+N +L Sbjct: 85 IILRLGLYEIRYEEAMPEAAAINEAINLAKRYSDEQSAKFVNGIL 129 >gi|30410822|ref|NP_660779.2| transcription antitermination protein NusB [Buchnera aphidicola str. Sg (Schizaphis graminum)] Length = 142 Score = 46.6 bits (109), Expect = 0.001, Method: Compositional matrix adjust. Identities = 47/152 (30%), Positives = 71/152 (46%), Gaps = 16/152 (10%) Query: 10 LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF 69 +K + RR AR A+Q LY +I + + + E E ++D+ +F Sbjct: 7 IKPNFRRK-ARACALQMLYSWEISQNNIKD-----------SAIEFLKEKNKKNIDIIYF 54 Query: 70 RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISE 129 +I G+ + ID L+ L+ S L I +ILR EL + +P +V I+E Sbjct: 55 YELIIGITYNCRSIDDLMKPYLSR--SLKELGQIEKAILRISFYELYKRKDIPYKVSINE 112 Query: 130 YVCIAHDFFYGDEPKFINAVLDKVSRKEEIKR 161 + +A F D KFIN VLDK + K IKR Sbjct: 113 GIELAKLFGSEDSHKFINGVLDKAALK--IKR 142 >gi|25008871|sp|Q8K9A2|NUSB_BUCAP RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|21623355|gb|AAM67990.1| N utilization substance protein B [Buchnera aphidicola str. Sg (Schizaphis graminum)] Length = 138 Score = 46.6 bits (109), Expect = 0.001, Method: Compositional matrix adjust. Identities = 47/152 (30%), Positives = 71/152 (46%), Gaps = 16/152 (10%) Query: 10 LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF 69 +K + RR AR A+Q LY +I + + + E E ++D+ +F Sbjct: 3 IKPNFRRK-ARACALQMLYSWEISQNNIKD-----------SAIEFLKEKNKKNIDIIYF 50 Query: 70 RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISE 129 +I G+ + ID L+ L+ S L I +ILR EL + +P +V I+E Sbjct: 51 YELIIGITYNCRSIDDLMKPYLSR--SLKELGQIEKAILRISFYELYKRKDIPYKVSINE 108 Query: 130 YVCIAHDFFYGDEPKFINAVLDKVSRKEEIKR 161 + +A F D KFIN VLDK + K IKR Sbjct: 109 GIELAKLFGSEDSHKFINGVLDKAALK--IKR 138 >gi|206890845|ref|YP_002249638.1| transcription antitermination factor NusB [Thermodesulfovibrio yellowstonii DSM 11347] gi|226738908|sp|B5YHQ2|NUSB_THEYD RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|206742783|gb|ACI21840.1| transcription antitermination factor NusB [Thermodesulfovibrio yellowstonii DSM 11347] Length = 151 Score = 46.6 bits (109), Expect = 0.001, Method: Compositional matrix adjust. Identities = 21/66 (31%), Positives = 39/66 (59%) Query: 92 TEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLD 151 +KW+ R+ I +ILR + E++ +P +V I+E V IA + + FIN +LD Sbjct: 77 ADKWNIERMITIDKNILRFSIYEILYRQDIPYQVTINEAVEIAKKYSTKESAAFINGILD 136 Query: 152 KVSRKE 157 +++++E Sbjct: 137 RIAKEE 142 >gi|330466963|ref|YP_004404706.1| nusb antitermination factor [Verrucosispora maris AB-18-032] gi|328809934|gb|AEB44106.1| nusb antitermination factor [Verrucosispora maris AB-18-032] Length = 144 Score = 46.6 bits (109), Expect = 0.001, Method: Compositional matrix adjust. Identities = 26/83 (31%), Positives = 43/83 (51%), Gaps = 1/83 (1%) Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131 ++ GV ID LISS E W+ R+ ++ ++ R V EL+ + V ISE V Sbjct: 58 LVEGVAGHLDRIDELISSY-AEGWTLDRMPVVDRNLARIAVYELLYVDEIDDAVAISEAV 116 Query: 132 CIAHDFFYGDEPKFINAVLDKVS 154 +A D P+F+N +L +++ Sbjct: 117 ELARQMSTDDSPRFLNGLLGRIA 139 >gi|303327268|ref|ZP_07357710.1| transcription antitermination factor NusB [Desulfovibrio sp. 3_1_syn3] gi|302863256|gb|EFL86188.1| transcription antitermination factor NusB [Desulfovibrio sp. 3_1_syn3] Length = 163 Score = 46.6 bits (109), Expect = 0.001, Method: Compositional matrix adjust. Identities = 40/154 (25%), Positives = 66/154 (42%), Gaps = 16/154 (10%) Query: 11 KLSHRRGIARLAAVQALYQIDIIGCSTTE------IISEYETYRFCADTELDVESVYLHV 64 K + RRG AR A Q LY + + ++S + T A E D+ S Sbjct: 5 KNTTRRG-ARELAFQVLYGLSFTPAESRADLRRAFVLSPHNT----AMDEQDLGSEPTGF 59 Query: 65 DLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVE 124 E ++ GV +D IS + W R+ I ++LR V E++ VP + Sbjct: 60 AWE----LVEGVWGNSAALDTAISR-FSHNWRVDRMGRIELTLLRLAVFEMLYRQDVPPK 114 Query: 125 VIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEE 158 V I+E + ++ F + F+N +LD ++ E Sbjct: 115 VAINEALELSGQFGEDNAKNFVNGILDAAAKALE 148 >gi|269795098|ref|YP_003314553.1| NusB antitermination factor [Sanguibacter keddieii DSM 10542] gi|269097283|gb|ACZ21719.1| NusB antitermination factor [Sanguibacter keddieii DSM 10542] Length = 138 Score = 46.6 bits (109), Expect = 0.001, Method: Compositional matrix adjust. Identities = 24/82 (29%), Positives = 44/82 (53%), Gaps = 1/82 (1%) Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131 I+ GV+++ ID L+ + + +WS R+ + ++LR G E++ VP V I E V Sbjct: 49 IVEGVLEQLDRIDELLETY-SHEWSLDRMPAVDRALLRIGTWEILFNDEVPDAVAIDEAV 107 Query: 132 CIAHDFFYGDEPKFINAVLDKV 153 ++ D P F+N +L ++ Sbjct: 108 ELSRSLSTDDSPVFVNGLLGRI 129 >gi|289663670|ref|ZP_06485251.1| transcription antitermination protein NusB [Xanthomonas campestris pv. vasculorum NCPPB702] gi|289671050|ref|ZP_06492125.1| transcription antitermination protein NusB [Xanthomonas campestris pv. musacearum NCPPB4381] Length = 156 Score = 46.6 bits (109), Expect = 0.001, Method: Compositional matrix adjust. Identities = 31/130 (23%), Positives = 56/130 (43%), Gaps = 13/130 (10%) Query: 25 QALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHID 84 QA+Y I G ++I ++ E + DL +F ++ GV+ + +D Sbjct: 30 QAVYAWQISGGFAKQVIGQFAH-----------EQAHEVADLAYFENLVEGVLSNRAELD 78 Query: 85 LLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPK 144 ++ L +D I ++LR EL+ VP V+I+E + A F Sbjct: 79 TALTPYLDR--GVEEVDAIERAVLRLAAYELLYRQDVPYRVVINEAIETAKRFGSEHGHT 136 Query: 145 FINAVLDKVS 154 ++N VLD+ + Sbjct: 137 YVNGVLDRAA 146 >gi|52840964|ref|YP_094763.1| transcription termination factor NusB [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] gi|52628075|gb|AAU26816.1| transcription termination factor NusB [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] Length = 123 Score = 46.6 bits (109), Expect = 0.001, Method: Compositional matrix adjust. Identities = 26/94 (27%), Positives = 52/94 (55%), Gaps = 4/94 (4%) Query: 64 VDLEWFRVIIHGVMDRKQHIDLLISSCLTE-KWSFSRLDMILCSILRAGVLELIECHSVP 122 VD E+F +++G+ H++ L +S L + L+ I ++LR G EL C +P Sbjct: 22 VDGEYFCRLLYGI---PTHVEALEASLLPYLDREINALNPIELTVLRIGSFELFHCPEIP 78 Query: 123 VEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRK 156 +VI+ E V + +F + +++N VL+ ++++ Sbjct: 79 YKVILDESVSLTKEFGSQEGYRYVNGVLNNLAKQ 112 >gi|290968307|ref|ZP_06559849.1| transcription antitermination factor NusB [Megasphaera genomosp. type_1 str. 28L] gi|290781666|gb|EFD94252.1| transcription antitermination factor NusB [Megasphaera genomosp. type_1 str. 28L] Length = 141 Score = 46.2 bits (108), Expect = 0.001, Method: Compositional matrix adjust. Identities = 26/88 (29%), Positives = 47/88 (53%), Gaps = 2/88 (2%) Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLEL-IECHSVPVEVIISEY 130 ++ V RK+ +D +I S L + W RL+ +I+R + E+ VP V+++E Sbjct: 54 LVQTVGARKEELDRIIGS-LAKDWDIQRLNYTEKNIMRLALCEMKYPKEPVPTAVVLNEA 112 Query: 131 VCIAHDFFYGDEPKFINAVLDKVSRKEE 158 V +A ++ + +F+N VL SR +E Sbjct: 113 VLLAKEYCSSEAARFVNGVLGTYSRMKE 140 >gi|28378299|ref|NP_785191.1| transcription antitermination protein NusB [Lactobacillus plantarum WCFS1] gi|32171607|sp|Q88WM9|NUSB_LACPL RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|28271134|emb|CAD64039.1| transcription termination factor NusB [Lactobacillus plantarum WCFS1] Length = 139 Score = 46.2 bits (108), Expect = 0.001, Method: Compositional matrix adjust. Identities = 26/90 (28%), Positives = 43/90 (47%) Query: 68 WFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVII 127 + ++ GV + + +D I L++KWS RL ILR EL VP +V + Sbjct: 48 YLSTLVTGVREHQVELDAQIQPYLSQKWSLDRLAKTDLIILRIAFFELQFVDDVPTKVAV 107 Query: 128 SEYVCIAHDFFYGDEPKFINAVLDKVSRKE 157 +E + + F KF++ VL KV + + Sbjct: 108 NEAIELTKAFSDDRSRKFVSGVLGKVVKNQ 137 >gi|282858295|ref|ZP_06267480.1| transcription antitermination factor NusB [Prevotella bivia JCVIHMP010] gi|282588926|gb|EFB94046.1| transcription antitermination factor NusB [Prevotella bivia JCVIHMP010] Length = 337 Score = 46.2 bits (108), Expect = 0.001, Method: Compositional matrix adjust. Identities = 31/132 (23%), Positives = 61/132 (46%), Gaps = 17/132 (12%) Query: 24 VQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHI 83 V+ + + D + E++ E++ D+ +DL FR I +Q++ Sbjct: 182 VKTIKRFDPANGADQELLPEFK----------DIADRQFAIDL--FRSTIMNAETYQQYM 229 Query: 84 DLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEP 143 S + W FSRL + I++ + E++ ++P+ V I+EYV +A + Sbjct: 230 -----SEASHNWDFSRLAYMDVVIMQIAIAEIVNFPNIPISVSINEYVNLAKLYSTPRSG 284 Query: 144 KFINAVLDKVSR 155 +IN +LD ++R Sbjct: 285 GYINGMLDSIAR 296 >gi|46447257|ref|YP_008622.1| putative transcription termination factor, nusB [Candidatus Protochlamydia amoebophila UWE25] gi|46400898|emb|CAF24347.1| putative transcription termination factor, nusB [Candidatus Protochlamydia amoebophila UWE25] Length = 154 Score = 46.2 bits (108), Expect = 0.001, Method: Compositional matrix adjust. Identities = 24/82 (29%), Positives = 47/82 (57%), Gaps = 3/82 (3%) Query: 89 SCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINA 148 S ++ + F+R+ + +ILR GV EL +P +V+I+E + ++ F + F+NA Sbjct: 38 SSVSLSYHFNRIQTVTKNILRLGVFELFFETDIPQKVVIAEAIRLSRKFSTPESASFVNA 97 Query: 149 VLDKV---SRKEEIKRSGCVSA 167 +LD++ S+ EE+ + V + Sbjct: 98 LLDQLYQKSKGEEVNSNLLVES 119 >gi|260553344|ref|ZP_05825958.1| transcription termination factor [Acinetobacter sp. RUH2624] gi|260405181|gb|EEW98679.1| transcription termination factor [Acinetobacter sp. RUH2624] Length = 149 Score = 46.2 bits (108), Expect = 0.001, Method: Compositional matrix adjust. Identities = 28/98 (28%), Positives = 50/98 (51%), Gaps = 2/98 (2%) Query: 57 VESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELI 116 E+ VDL ++ ++ V+ + + +D L+ L + LD + + LR G EL Sbjct: 42 AENAMHKVDLSYYHELLTQVIAQHEDLDALLIPVLDRE--IDALDGVELATLRLGAYELR 99 Query: 117 ECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVS 154 + +P V++ E + +A F D K+IN VLD++S Sbjct: 100 DHLEIPYRVVLDEAIELAKHFGGADSHKYINGVLDRLS 137 >gi|167563762|ref|ZP_02356678.1| transcription antitermination protein NusB [Burkholderia oklahomensis EO147] gi|167570906|ref|ZP_02363780.1| transcription antitermination protein NusB [Burkholderia oklahomensis C6786] Length = 145 Score = 46.2 bits (108), Expect = 0.001, Method: Compositional matrix adjust. Identities = 44/147 (29%), Positives = 61/147 (41%), Gaps = 14/147 (9%) Query: 10 LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF 69 +K S RR +R A Q LYQ + + EI D +L Y D Sbjct: 1 MKKSARRQ-SRELATQGLYQWLLSNAAPGEI-----------DAQLRGALGYDKADKTLL 48 Query: 70 RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISE 129 I+HGV+ + IS L +L + ++L EL P VII+E Sbjct: 49 DTILHGVIREHAALAEAISPSLDR--PIDQLSPVERAVLLIATYELTHQIETPYRVIINE 106 Query: 130 YVCIAHDFFYGDEPKFINAVLDKVSRK 156 V +A F D K++N VLDK+S K Sbjct: 107 AVELAKTFGGSDGYKYVNGVLDKLSVK 133 >gi|58583474|ref|YP_202490.1| transcription antitermination protein NusB [Xanthomonas oryzae pv. oryzae KACC10331] gi|84625287|ref|YP_452659.1| transcription antitermination protein NusB [Xanthomonas oryzae pv. oryzae MAFF 311018] gi|188575269|ref|YP_001912198.1| transcription antitermination protein NusB [Xanthomonas oryzae pv. oryzae PXO99A] gi|75434146|sp|Q5GW16|NUSB_XANOR RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|119390848|sp|Q2NZ92|NUSB_XANOM RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|238689535|sp|B2SNW5|NUSB_XANOP RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|58428068|gb|AAW77105.1| transcription termination factor NusB [Xanthomonas oryzae pv. oryzae KACC10331] gi|84369227|dbj|BAE70385.1| N utilization substance protein B homolog [Xanthomonas oryzae pv. oryzae MAFF 311018] gi|188519721|gb|ACD57666.1| transcription antitermination factor NusB [Xanthomonas oryzae pv. oryzae PXO99A] Length = 156 Score = 46.2 bits (108), Expect = 0.001, Method: Compositional matrix adjust. Identities = 31/130 (23%), Positives = 57/130 (43%), Gaps = 13/130 (10%) Query: 25 QALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHID 84 QA+Y I G ++I+++ E + DL +F ++ GV+ + +D Sbjct: 30 QAVYAWQISGGFAKQVIAQFAH-----------EQAHEVADLAYFENLVEGVLTNRAELD 78 Query: 85 LLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPK 144 ++ L +D I ++LR EL+ VP V+I+E + A F Sbjct: 79 TALTPYLDR--GVEEVDAIERAVLRLAAYELLYRQDVPYRVVINEAIETAKRFGSEHGHT 136 Query: 145 FINAVLDKVS 154 ++N VLD+ + Sbjct: 137 YVNGVLDRAA 146 >gi|257468965|ref|ZP_05633059.1| transcription antitermination protein NusB [Fusobacterium ulcerans ATCC 49185] gi|317063213|ref|ZP_07927698.1| N utilization substance protein B [Fusobacterium ulcerans ATCC 49185] gi|313688889|gb|EFS25724.1| N utilization substance protein B [Fusobacterium ulcerans ATCC 49185] Length = 132 Score = 46.2 bits (108), Expect = 0.001, Method: Compositional matrix adjust. Identities = 39/141 (27%), Positives = 70/141 (49%), Gaps = 17/141 (12%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVD-LEWFRVIIH 74 R +AR + +++ +I +T +I+ Y L E V + + + + + ++ Sbjct: 3 RRLAREELFKLVFEGEIKEENTKDILESY----------LKREEVLQNENEITFIKKYMN 52 Query: 75 GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134 G+ + I I +T WSF R+ + ++L+ V E++ C P E++I+E V +A Sbjct: 53 GIAENNDRILKTIEEKIT-GWSFERIGNVEKALLKISVYEIL-CEDTPHEIVINEAVELA 110 Query: 135 HDFFYGDEP--KFINAVLDKV 153 YGDE +FIN VL KV Sbjct: 111 K--MYGDEKTSEFINGVLAKV 129 >gi|302387570|ref|YP_003823392.1| NusB antitermination factor [Clostridium saccharolyticum WM1] gi|302198198|gb|ADL05769.1| NusB antitermination factor [Clostridium saccharolyticum WM1] Length = 147 Score = 46.2 bits (108), Expect = 0.001, Method: Compositional matrix adjust. Identities = 28/86 (32%), Positives = 43/86 (50%), Gaps = 1/86 (1%) Query: 68 WFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVII 127 + R VM R +DL I+ + E W R+ +ILR + E++ VP +V I Sbjct: 62 YLRERAESVMARIPELDLKINE-VAEGWKTKRMGKAELTILRLALYEILFDEDVPEKVAI 120 Query: 128 SEYVCIAHDFFYGDEPKFINAVLDKV 153 +E V +A + + P FIN VL K+ Sbjct: 121 NEAVELAKKYGGNEAPAFINGVLAKL 146 >gi|91774848|ref|YP_544604.1| NusB antitermination factor [Methylobacillus flagellatus KT] gi|119390784|sp|Q1H424|NUSB_METFK RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|91708835|gb|ABE48763.1| NusB antitermination factor [Methylobacillus flagellatus KT] Length = 154 Score = 46.2 bits (108), Expect = 0.001, Method: Compositional matrix adjust. Identities = 34/112 (30%), Positives = 56/112 (50%), Gaps = 5/112 (4%) Query: 54 ELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVL 113 EL + + D E+FR ++ GV + +D ++ L + S L I +IL Sbjct: 43 ELADDPDFDRADYEYFRQLLEGVAESIDELDARLAGLLDRQ--VSELSPIEHAILCIAAY 100 Query: 114 ELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKV---SRKEEIKRS 162 ELI ++P V I+E V +A + D K++N VLDK+ +R +E +R Sbjct: 101 ELIHDVTIPYRVAINEGVELAKLYGGTDGHKYVNGVLDKIAAEARPDEFQRG 152 >gi|323344945|ref|ZP_08085169.1| NusB family protein [Prevotella oralis ATCC 33269] gi|323094215|gb|EFZ36792.1| NusB family protein [Prevotella oralis ATCC 33269] Length = 329 Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust. Identities = 38/149 (25%), Positives = 67/149 (44%), Gaps = 17/149 (11%) Query: 7 KKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDL 66 +K+L + + I ++ + + D S E++ EY+ D+E L Sbjct: 165 EKNLYWNDDKEIVDTFVLKTIKRFDPKNKSKQELLPEYK----------DMEDKDFACKL 214 Query: 67 EWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVI 126 FR I D+ QH S + W FSRL + I++ + E++ ++PV V Sbjct: 215 --FRATILNA-DQYQHY----MSETSRNWDFSRLAYMDVVIMQIAIAEMLTFPNIPVSVT 267 Query: 127 ISEYVCIAHDFFYGDEPKFINAVLDKVSR 155 I+EYV +A + +IN +LD ++R Sbjct: 268 INEYVDLAKLYSTPKSGGYINGMLDSIAR 296 >gi|331701511|ref|YP_004398470.1| NusB antitermination factor [Lactobacillus buchneri NRRL B-30929] gi|329128854|gb|AEB73407.1| NusB antitermination factor [Lactobacillus buchneri NRRL B-30929] Length = 137 Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust. Identities = 25/84 (29%), Positives = 40/84 (47%) Query: 67 EWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVI 126 E+ +I GV++ K ID I L WS R+ IL + E++ +P +V Sbjct: 45 EYLHQLISGVLEHKSEIDHTIEKYLASSWSLERIARTDLIILEIAIYEMVYVDDMPAKVS 104 Query: 127 ISEYVCIAHDFFYGDEPKFINAVL 150 I+E + +A F KF+N +L Sbjct: 105 INEAIELAKKFSDDRSRKFVNGIL 128 >gi|300771100|ref|ZP_07080976.1| NusB family protein [Sphingobacterium spiritivorum ATCC 33861] gi|300761770|gb|EFK58590.1| NusB family protein [Sphingobacterium spiritivorum ATCC 33861] Length = 304 Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust. Identities = 23/76 (30%), Positives = 43/76 (56%), Gaps = 4/76 (5%) Query: 92 TEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLD 151 T+ W R+ ++ ++R + ELI S+PV+V I+EY+ ++ F FIN +LD Sbjct: 224 TKNWEADRIALLDTILMRMAICELINFSSIPVKVTINEYIELSKVFSTLKSNTFINGILD 283 Query: 152 KV----SRKEEIKRSG 163 K+ +++ I++ G Sbjct: 284 KILADLNQQGRIRKQG 299 >gi|253581940|ref|ZP_04859164.1| N utilization substance protein B [Fusobacterium varium ATCC 27725] gi|251836289|gb|EES64826.1| N utilization substance protein B [Fusobacterium varium ATCC 27725] Length = 132 Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust. Identities = 36/141 (25%), Positives = 72/141 (51%), Gaps = 17/141 (12%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVD-LEWFRVIIH 74 R +AR + +++ +I +T +I+ Y L+ E + + + + + + ++ Sbjct: 3 RRLAREELFKLVFEGEIKEENTKDILESY----------LNREEILQNENEIAFIKKYMN 52 Query: 75 GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134 G+ + I +I +T WSF R+ + ++L+ V E++ C P E++I+E V +A Sbjct: 53 GIAENNDKILKVIEEKIT-GWSFERIGNVEKALLKISVYEIL-CEDTPYEIVINEAVELA 110 Query: 135 HDFFYGDEP--KFINAVLDKV 153 YGDE +F+N VL K+ Sbjct: 111 K--IYGDEKTSEFLNGVLAKI 129 >gi|199597165|ref|ZP_03210597.1| transcription antitermination protein NusB [Lactobacillus rhamnosus HN001] gi|258508679|ref|YP_003171430.1| transcription antitermination protein NusB [Lactobacillus rhamnosus GG] gi|258539856|ref|YP_003174355.1| transcription antitermination protein NusB [Lactobacillus rhamnosus Lc 705] gi|199591969|gb|EDZ00044.1| transcription antitermination protein NusB [Lactobacillus rhamnosus HN001] gi|257148606|emb|CAR87579.1| N utilization substance protein B homolog [Lactobacillus rhamnosus GG] gi|257151532|emb|CAR90504.1| N utilization substance protein B homolog [Lactobacillus rhamnosus Lc 705] gi|259649985|dbj|BAI42147.1| transcription antitermination protein NusB [Lactobacillus rhamnosus GG] Length = 135 Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust. Identities = 28/105 (26%), Positives = 50/105 (47%), Gaps = 6/105 (5%) Query: 52 DTELDVESVYLHV---DLE---WFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILC 105 + E D +VY V D E + ++ GV+ + +D ++ L + W+ SRL Sbjct: 21 NPEADKNAVYAEVLPKDTEVPSYLTALVEGVLANQAALDAALTPQLKKGWTLSRLTKPDL 80 Query: 106 SILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVL 150 ILR G+ E+ ++P I+E + +A + KF+N +L Sbjct: 81 IILRLGLYEIRYEEAMPEAAAINEAINLAKRYSDEQSAKFVNGIL 125 >gi|111224614|ref|YP_715408.1| antitermination factor NusB [Frankia alni ACN14a] gi|111152146|emb|CAJ63876.1| Antitermination factor NusB [Frankia alni ACN14a] Length = 124 Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust. Identities = 26/85 (30%), Positives = 44/85 (51%), Gaps = 1/85 (1%) Query: 67 EWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVI 126 E+ ++ GV++ + I+ I E W+ R+ + +ILR VLEL+ VP V+ Sbjct: 23 EYAEGLVRGVVEHWREINERIGRH-AEGWTLERMPPVDRNILRIAVLELLWRPDVPPRVV 81 Query: 127 ISEYVCIAHDFFYGDEPKFINAVLD 151 I E V +A + P F+N ++D Sbjct: 82 IDEAVELAKNLSTDRSPSFVNGLVD 106 >gi|16331086|ref|NP_441814.1| transcription antitermination protein NusB [Synechocystis sp. PCC 6803] gi|1653579|dbj|BAA18492.1| N utilization substance protein B [Synechocystis sp. PCC 6803] Length = 275 Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust. Identities = 31/86 (36%), Positives = 46/86 (53%), Gaps = 2/86 (2%) Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131 +I V R+Q ID + + + W SRL I ILR + EL + VP +V I+E V Sbjct: 180 LIGTVCRRRQQIDEQLQEAMVD-WQLSRLAKIDQDILRLAIAEL-DYLGVPQKVAINEAV 237 Query: 132 CIAHDFFYGDEPKFINAVLDKVSRKE 157 +A + D +FIN VL +V+ K+ Sbjct: 238 ELAKRYSGQDGHRFINGVLRRVTEKK 263 >gi|325918406|ref|ZP_08180534.1| transcription antitermination factor NusB [Xanthomonas vesicatoria ATCC 35937] gi|325535368|gb|EGD07236.1| transcription antitermination factor NusB [Xanthomonas vesicatoria ATCC 35937] Length = 156 Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust. Identities = 31/130 (23%), Positives = 56/130 (43%), Gaps = 13/130 (10%) Query: 25 QALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHID 84 QA+Y I G ++I ++ E + DL +F ++ GV+ + +D Sbjct: 30 QAVYAWQISGGFAKQVIGQFAH-----------EQAHEVADLAYFESLVEGVLTHRAELD 78 Query: 85 LLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPK 144 ++ L +D I ++LR EL+ VP V+I+E + A F Sbjct: 79 TALTPYLDR--GVEEVDAIERAVLRLAAYELLYRQDVPYRVVINEAIETAKRFGSEHGHT 136 Query: 145 FINAVLDKVS 154 ++N VLD+ + Sbjct: 137 YVNGVLDRAA 146 >gi|229174859|ref|ZP_04302379.1| N utilization substance protein B [Bacillus cereus MM3] gi|228608527|gb|EEK65829.1| N utilization substance protein B [Bacillus cereus MM3] Length = 114 Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust. Identities = 30/89 (33%), Positives = 47/89 (52%), Gaps = 5/89 (5%) Query: 67 EWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVI 126 ++ ++ G ++ K+ ID I L +KW R+ ++ SILR V E+ +P V Sbjct: 25 DFLESLVVGFVENKEVIDEAIRQNL-KKWKLERISIVDRSILRVAVYEMKYMEEIPHNVT 83 Query: 127 ISEYVCIAHDFFYGDEP--KFINAVLDKV 153 I+E + IA F GDE +FIN VL + Sbjct: 84 INEAIEIAKTF--GDEESRRFINGVLSNI 110 >gi|227540276|ref|ZP_03970325.1| N utilization substance protein [Sphingobacterium spiritivorum ATCC 33300] gi|227239812|gb|EEI89827.1| N utilization substance protein [Sphingobacterium spiritivorum ATCC 33300] Length = 300 Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust. Identities = 23/76 (30%), Positives = 43/76 (56%), Gaps = 4/76 (5%) Query: 92 TEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLD 151 T+ W R+ ++ ++R + ELI S+PV+V I+EY+ ++ F FIN +LD Sbjct: 220 TKNWEADRIALLDTILMRMAICELINFSSIPVKVTINEYIELSKVFSTLKSNTFINGILD 279 Query: 152 KV----SRKEEIKRSG 163 K+ +++ I++ G Sbjct: 280 KILADLNQQGRIRKQG 295 >gi|308069602|ref|YP_003871207.1| N utilization substance protein B-like protein [Paenibacillus polymyxa E681] gi|305858881|gb|ADM70669.1| N utilization substance protein B-like protein [Paenibacillus polymyxa E681] Length = 149 Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust. Identities = 26/81 (32%), Positives = 42/81 (51%), Gaps = 1/81 (1%) Query: 73 IHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVC 132 + G + K+ ID L+ L + W SRL + ILR E+I VP +V ++E + Sbjct: 59 VRGTWEHKEAIDGLLVDYL-KGWQISRLSRVDRQILRLAAYEMIFREDVPAKVAVNEAIE 117 Query: 133 IAHDFFYGDEPKFINAVLDKV 153 ++ F + KF+N VL +V Sbjct: 118 LSKHFGTEESGKFVNGVLGRV 138 >gi|291542594|emb|CBL15704.1| ribosomal RNA small subunit methyltransferase RsmB [Ruminococcus bromii L2-63] Length = 446 Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust. Identities = 26/95 (27%), Positives = 49/95 (51%), Gaps = 2/95 (2%) Query: 64 VDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPV 123 VD + +++GV++R+ +D +I S K +++ +ILR G+L+L+ VP Sbjct: 38 VDSSFVSALVYGVLERRITLDYIIRS--YSKIPLRKIETKTKNILRLGILQLLFMDKVPD 95 Query: 124 EVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEE 158 ++E V +A FIN +L ++R E+ Sbjct: 96 SAAVNESVNLAKKHKLQKSSGFINGILRNITRAED 130 >gi|313884728|ref|ZP_07818484.1| transcription antitermination factor NusB [Eremococcus coleocola ACS-139-V-Col8] gi|312620096|gb|EFR31529.1| transcription antitermination factor NusB [Eremococcus coleocola ACS-139-V-Col8] Length = 158 Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust. Identities = 40/139 (28%), Positives = 66/139 (47%), Gaps = 9/139 (6%) Query: 15 RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74 R AR AVQALY D + + + F ++ + Y V ++ ++++ Sbjct: 7 NRSQARQVAVQALY--DYTHFESNNDLDQ--ALDFALESGHFPDQGYDEVANDYLYLLLN 62 Query: 75 GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELI--ECHSVPVEVIISEYVC 132 GV+D ID I L + W+ +R+ I +ILR EL+ + VP V + E + Sbjct: 63 GVVDHLSEIDAHIEKYL-KNWTLARIARIDLNILRVAFFELLYMDKEDVPARVTVDEAIE 121 Query: 133 IAHDFFYGDEPK-FINAVL 150 ++ FF D+ + FIN VL Sbjct: 122 LSK-FFSDDKSRQFINGVL 139 >gi|291456359|ref|ZP_06595749.1| transcription antitermination factor NusB [Bifidobacterium breve DSM 20213] gi|291381636|gb|EFE89154.1| transcription antitermination factor NusB [Bifidobacterium breve DSM 20213] Length = 176 Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust. Identities = 38/150 (25%), Positives = 65/150 (43%), Gaps = 12/150 (8%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 R AR A+ LY+ D G ++ E + A T L ++ I+ G Sbjct: 3 RSTARKRALNTLYEADEKGQDILSLLDERIAHP-GAQTPL----------PDYAIDIVKG 51 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135 V + ++ ID+ + T W R+ ++ +ILR E++ VP +V I E + +A Sbjct: 52 VAEHRRQIDMTLDDHST-GWKVRRMGVVDRNILRIAAWEILFNDEVPDKVAIDEALALAK 110 Query: 136 DFFYGDEPKFINAVLDKVSRKEEIKRSGCV 165 D P FI+ +L V + + +G V Sbjct: 111 TLCDDDSPAFIHGLLSAVCNAKNTEPAGSV 140 >gi|254180977|ref|ZP_04887575.1| transcription antitermination factor NusB [Burkholderia pseudomallei 1655] gi|184211516|gb|EDU08559.1| transcription antitermination factor NusB [Burkholderia pseudomallei 1655] Length = 145 Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust. Identities = 42/147 (28%), Positives = 64/147 (43%), Gaps = 14/147 (9%) Query: 10 LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF 69 +K S RR +R A Q LYQ + + +EI D +L Y D Sbjct: 1 MKKSARRQ-SRELATQGLYQWLLSNAAPSEI-----------DAQLRGALGYDKADKTLL 48 Query: 70 RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISE 129 I+HGV+ ++H L + + +L + ++L EL P VII+E Sbjct: 49 DTILHGVI--REHATLAEAISPSLDRPIDQLSPVERAVLLIATYELTHQIETPYRVIINE 106 Query: 130 YVCIAHDFFYGDEPKFINAVLDKVSRK 156 V +A F D K++N VLDK++ K Sbjct: 107 AVELAKTFGGSDGYKYVNGVLDKLAVK 133 >gi|315608439|ref|ZP_07883427.1| NusB family protein [Prevotella buccae ATCC 33574] gi|315249899|gb|EFU29900.1| NusB family protein [Prevotella buccae ATCC 33574] Length = 345 Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust. Identities = 32/132 (24%), Positives = 57/132 (43%), Gaps = 17/132 (12%) Query: 24 VQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHI 83 V+ + + D S E++ EY+ D E D E+ R + + Sbjct: 182 VKTIKRFDPANKSNQELLPEYK------DEE----------DREFARKLFRATILNADQY 225 Query: 84 DLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEP 143 +S + W FSRL + I++ + E++ +PV V I+EYV +A + Sbjct: 226 QRYMSDA-SRNWDFSRLAYMDVVIMQIAIAEMLTFPGIPVSVTINEYVNLAKVYSTPRSG 284 Query: 144 KFINAVLDKVSR 155 +IN +LD ++R Sbjct: 285 GYINGMLDNIAR 296 >gi|260495022|ref|ZP_05815151.1| transcription antitermination factor NusB [Fusobacterium sp. 3_1_33] gi|260197465|gb|EEW94983.1| transcription antitermination factor NusB [Fusobacterium sp. 3_1_33] Length = 157 Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust. Identities = 35/120 (29%), Positives = 61/120 (50%), Gaps = 20/120 (16%) Query: 59 SVYLHVD-----------LEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSI 107 SVYL D LE+ + I+ +++ +I +I T+ W++ R+ +I S+ Sbjct: 45 SVYLQNDEEFINALSEKQLEFIKNSINRIVENYDNIKDVIKKN-TQNWTYERIGVIERSL 103 Query: 108 LRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEP--KFINAVLDKVSRKEEIKRSGCV 165 L G E + + P+EVI +E V +A + YG+E +FIN +L + E+ K G + Sbjct: 104 LIVGTYEFL-IKNTPIEVIANEIVELAKE--YGNEKSYEFINGILANI---EKAKNKGTI 157 >gi|221195846|ref|ZP_03568899.1| transcription antitermination factor NusB [Atopobium rimae ATCC 49626] gi|221184320|gb|EEE16714.1| transcription antitermination factor NusB [Atopobium rimae ATCC 49626] Length = 161 Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust. Identities = 33/140 (23%), Positives = 70/140 (50%), Gaps = 16/140 (11%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEII-SEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74 R +AR A+Q L+Q + + E++ EY ++ LD + L + R Sbjct: 8 RTLARSQALQLLFQAEQTNRTVEEVLQGEY----VLSEGPLDPYAEKLACGTDGIR---- 59 Query: 75 GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134 +D+++++ + WS SR+ + ++L+ + E++E V V + I+E + ++ Sbjct: 60 ------DDLDMILNA-YSHGWSVSRMPSVDRNLLQLSLYEMLEVSEVDVSITINEVIELS 112 Query: 135 HDFFYGDEPKFINAVLDKVS 154 H + + P+FIN +L +V+ Sbjct: 113 HAYCGDESPRFINGILGRVA 132 >gi|34556732|ref|NP_906547.1| transcription antitermination protein NusB [Wolinella succinogenes DSM 1740] gi|39931695|sp|Q7MAE9|NUSB_WOLSU RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|34482446|emb|CAE09447.1| TRANSCRIPTION TERMINATION PROTEIN [Wolinella succinogenes] Length = 135 Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust. Identities = 44/136 (32%), Positives = 61/136 (44%), Gaps = 13/136 (9%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 R AR A V LY D+ TEI +F EL E + E+ + G Sbjct: 4 RAQAREAVVSLLYAYDM---GNTEI------RKFA--IELLEEKRIKNRQQEFALELFDG 52 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135 + ID I L E W FSR+ + +ILR G E++ V VII+E V ++ Sbjct: 53 TIAHLGEIDEEIKKHLKE-WDFSRIGDMERAILRLGTFEIV-YSGVDRAVIINEAVELSK 110 Query: 136 DFFYGDEPKFINAVLD 151 F + P+F+N VLD Sbjct: 111 TFGNDNSPRFVNGVLD 126 >gi|121605810|ref|YP_983139.1| transcription antitermination protein NusB [Polaromonas naphthalenivorans CJ2] gi|120594779|gb|ABM38218.1| NusB antitermination factor [Polaromonas naphthalenivorans CJ2] Length = 173 Score = 45.8 bits (107), Expect = 0.002, Method: Compositional matrix adjust. Identities = 38/140 (27%), Positives = 66/140 (47%), Gaps = 15/140 (10%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLH-VDLEWFRVIIH 74 R AR A+QALYQ ++G + + I + + V H D + ++H Sbjct: 32 RTRAREFALQALYQ-HLVGQNGADSIDAFTR-----------DLVGFHKADSAHYDALLH 79 Query: 75 GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134 G ++ ++ +D I+ L K + + + +IL G E C VP V+I+E + +A Sbjct: 80 GCIESEKALDENITPLLDRK--MAEISPVEHAILWIGAYEFTNCLDVPYRVVINECIELA 137 Query: 135 HDFFYGDEPKFINAVLDKVS 154 F D K++N VL K++ Sbjct: 138 KAFGGTDGHKYVNGVLHKMA 157 >gi|288926808|ref|ZP_06420717.1| NusB family protein [Prevotella buccae D17] gi|288336437|gb|EFC74814.1| NusB family protein [Prevotella buccae D17] Length = 320 Score = 45.8 bits (107), Expect = 0.002, Method: Compositional matrix adjust. Identities = 32/132 (24%), Positives = 57/132 (43%), Gaps = 17/132 (12%) Query: 24 VQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHI 83 V+ + + D S E++ EY+ D E D E+ R + + Sbjct: 157 VKTIKRFDPANKSNQELLPEYK------DEE----------DREFARKLFRATILNADQY 200 Query: 84 DLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEP 143 +S + W FSRL + I++ + E++ +PV V I+EYV +A + Sbjct: 201 QRYMSDA-SRNWDFSRLAYMDVVIMQIAIAEMLTFPGIPVSVTINEYVNLAKVYSTPRSG 259 Query: 144 KFINAVLDKVSR 155 +IN +LD ++R Sbjct: 260 GYINGMLDNIAR 271 >gi|326692420|ref|ZP_08229425.1| N utilization substance protein B [Leuconostoc argentinum KCTC 3773] Length = 138 Score = 45.8 bits (107), Expect = 0.002, Method: Compositional matrix adjust. Identities = 37/135 (27%), Positives = 63/135 (46%), Gaps = 14/135 (10%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 R +R AA Q L+ ++ S + I S YE D + ++ +++G Sbjct: 6 RHESRQAAFQVLFALEKDPTSNS-IDSLYEIVLDGKDYD------------DYLPRLVNG 52 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135 V+ K +D I++ L W+ +R++ ILR + EL VP +V I E + +A Sbjct: 53 VLGSKADLDAHITAHLATGWAINRINKADLVILRLAIYEL-NNQLVPYKVAIDEALILAK 111 Query: 136 DFFYGDEPKFINAVL 150 F D+ KF+N +L Sbjct: 112 TFADEDDRKFVNGLL 126 >gi|169831182|ref|YP_001717164.1| NusB antitermination factor [Candidatus Desulforudis audaxviator MP104C] gi|238688239|sp|B1I3I9|NUSB_DESAP RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|169638026|gb|ACA59532.1| NusB antitermination factor [Candidatus Desulforudis audaxviator MP104C] Length = 138 Score = 45.8 bits (107), Expect = 0.002, Method: Compositional matrix adjust. Identities = 33/144 (22%), Positives = 66/144 (45%), Gaps = 12/144 (8%) Query: 15 RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74 +R R A+Q L+Q ++ S + F +TE D + + ++ Sbjct: 2 KRRRQRETALQVLFQAEVARISGERAFARTMEL-FGLNTE----------DFAYAQELVD 50 Query: 75 GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134 GV+ + +D +IS + +W R+ + +I+R + E+ +P+ V ++E + +A Sbjct: 51 GVLAKVDRLDRIISRV-SHEWRLERMANVDRNIIRLALYEVFFRDDIPINVAVNEALELA 109 Query: 135 HDFFYGDEPKFINAVLDKVSRKEE 158 F D +F+N +L KV + E Sbjct: 110 RTFGTEDSRRFVNGILGKVVEEPE 133 >gi|224437825|ref|ZP_03658772.1| transcription antitermination protein NusB [Helicobacter cinaedi CCUG 18818] gi|313144273|ref|ZP_07806466.1| transcription antitermination protein NusB [Helicobacter cinaedi CCUG 18818] gi|313129304|gb|EFR46921.1| transcription antitermination protein NusB [Helicobacter cinaedi CCUG 18818] Length = 165 Score = 45.8 bits (107), Expect = 0.002, Method: Compositional matrix adjust. Identities = 29/88 (32%), Positives = 47/88 (53%), Gaps = 7/88 (7%) Query: 71 VIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEY 130 +++ G + Q ID I L E W FSRL + ++LR G E++ + V+I+E Sbjct: 48 LLLQGAITNLQSIDEAIIPYLKE-WDFSRLGGMEKAVLRLGAYEILYTDT-DSPVVINEA 105 Query: 131 VCIAHDFFYGDE---PKFINAVLDKVSR 155 + + YG E P+F+N VLD +S+ Sbjct: 106 IELGK--MYGGEDNTPRFLNGVLDALSK 131 >gi|322390165|ref|ZP_08063697.1| N utilization substance protein B [Streptococcus parasanguinis ATCC 903] gi|321143125|gb|EFX38571.1| N utilization substance protein B [Streptococcus parasanguinis ATCC 903] Length = 143 Score = 45.8 bits (107), Expect = 0.002, Method: Compositional matrix adjust. Identities = 30/96 (31%), Positives = 48/96 (50%), Gaps = 2/96 (2%) Query: 63 HVDLEWFRV-IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSV 121 VDL F + ++ GV K +D I L W+ RL ++ +ILR G+ E+ E + Sbjct: 49 EVDLPAFLMNLVTGVYQSKDQLDQQIGQHLKTGWTVERLTLVEKNILRLGIYEMTEFDT- 107 Query: 122 PVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKE 157 P V ++E V +A F +F+N VL + +E Sbjct: 108 PQIVAVNEAVELAKAFSDETSSRFVNGVLSQFVTEE 143 >gi|225570633|ref|ZP_03779656.1| hypothetical protein CLOHYLEM_06733 [Clostridium hylemonae DSM 15053] gi|225160551|gb|EEG73170.1| hypothetical protein CLOHYLEM_06733 [Clostridium hylemonae DSM 15053] Length = 132 Score = 45.8 bits (107), Expect = 0.002, Method: Compositional matrix adjust. Identities = 33/115 (28%), Positives = 54/115 (46%), Gaps = 11/115 (9%) Query: 49 FCADTELDVESVYLHV---------DLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSR 99 FC + EL E + L+ DL++ + + + ID LI+ +T W R Sbjct: 19 FCGEEELP-EQLALYEEQLDSAGEEDLKYISGKSRNIAAKTEEIDRLINEHVT-GWKTGR 76 Query: 100 LDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVS 154 ++ + +ILR V E+ VP V I E V +A + + P F+N VL K++ Sbjct: 77 MNKVDLTILRLAVYEMNWDEDVPTGVAIDEAVELAKKYSGEEGPAFVNGVLAKLA 131 >gi|319956407|ref|YP_004167670.1| nusb antitermination factor [Nitratifractor salsuginis DSM 16511] gi|319418811|gb|ADV45921.1| NusB antitermination factor [Nitratifractor salsuginis DSM 16511] Length = 143 Score = 45.8 bits (107), Expect = 0.002, Method: Compositional matrix adjust. Identities = 30/85 (35%), Positives = 44/85 (51%), Gaps = 4/85 (4%) Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLE-LIECHSVPVEVIISEY 130 + G ++ ID I L E W +S++ + +ILR G E LIE P+ II+E Sbjct: 49 LFKGTIENLDKIDEEIQKHL-ESWDYSKIGKVEKAILRLGAYEILIEGTDRPI--IINEA 105 Query: 131 VCIAHDFFYGDEPKFINAVLDKVSR 155 V +A + P+FIN VLD V + Sbjct: 106 VELAKELADEKSPQFINGVLDAVGK 130 >gi|332077717|gb|EGI88178.1| transcription antitermination factor NusB [Streptococcus pneumoniae GA41301] Length = 121 Score = 45.8 bits (107), Expect = 0.002, Method: Compositional matrix adjust. Identities = 33/119 (27%), Positives = 54/119 (45%), Gaps = 8/119 (6%) Query: 46 TYRFCADTELDVESVYLH------VDLEWFRV-IIHGVMDRKQHIDLLISSCLTEKWSFS 98 + F D E Y H V L F + ++ V +K+ +D I+ L W+ Sbjct: 2 SLEFGTDVETACRFAYTHDREDTDVQLPAFLIDLVSDVQAKKEELDKQITQHLKAGWTIE 61 Query: 99 RLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKE 157 RL ++ ++LR GV E I P V ++E + +A DF +FIN +L + +E Sbjct: 62 RLTLVERNLLRLGVFE-ITSFDTPQLVAVNEAIELAKDFSDQKSARFINGLLSQFVTEE 119 >gi|323488925|ref|ZP_08094162.1| N utilization substance protein B-like protein (NusB-like protein) [Planococcus donghaensis MPA1U2] gi|323397317|gb|EGA90126.1| N utilization substance protein B-like protein (NusB-like protein) [Planococcus donghaensis MPA1U2] Length = 129 Score = 45.8 bits (107), Expect = 0.002, Method: Compositional matrix adjust. Identities = 37/146 (25%), Positives = 60/146 (41%), Gaps = 25/146 (17%) Query: 15 RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHV----DLEWFR 70 +R AR A+Q L+Q++ TEL + HV + ++ Sbjct: 2 KRHEAREKALQTLFQLE--------------------GTELTINEAMDHVMAGENDNFYD 41 Query: 71 VIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEY 130 +++ G ID + L E WS RL I +ILR + EL P V+++E Sbjct: 42 LLVQGTYTNMATIDEKLVDHL-ENWSIERLPKIERTILRMAIFELEYMEDAPARVVMNEA 100 Query: 131 VCIAHDFFYGDEPKFINAVLDKVSRK 156 + + F +F+N VL K + K Sbjct: 101 IELCKTFGDDKSSRFVNGVLSKFTDK 126 >gi|256372479|ref|YP_003110303.1| NusB antitermination factor [Acidimicrobium ferrooxidans DSM 10331] gi|256009063|gb|ACU54630.1| NusB antitermination factor [Acidimicrobium ferrooxidans DSM 10331] Length = 145 Score = 45.8 bits (107), Expect = 0.002, Method: Compositional matrix adjust. Identities = 33/107 (30%), Positives = 52/107 (48%), Gaps = 3/107 (2%) Query: 49 FCADTELDVESVYLHVDLEWF-RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSI 107 + ADT+ + + L D F R I G+ +R+ ID +++ + W RL I +I Sbjct: 24 YEADTKGEAPADLLRGDEPAFIRERIRGLTERRSEIDAQLTAHVI-GWQLERLAPIDRAI 82 Query: 108 LRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVS 154 LR EL+E S P V I+E V +A + F+N VL ++ Sbjct: 83 LRLATAELLEA-STPPSVAIAEAVKLADRYSTERSAAFVNGVLASIA 128 >gi|237654565|ref|YP_002890879.1| transcription antitermination protein NusB [Thauera sp. MZ1T] gi|237625812|gb|ACR02502.1| NusB antitermination factor [Thauera sp. MZ1T] Length = 166 Score = 45.8 bits (107), Expect = 0.002, Method: Compositional matrix adjust. Identities = 45/154 (29%), Positives = 70/154 (45%), Gaps = 19/154 (12%) Query: 11 KLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTE-LDVESVYLHVDLEWF 69 K++ RR AR A+Q +YQ + G + T + E+ +TE LD +D E F Sbjct: 21 KMARRR--ARELALQGVYQWLLSGNNATTVQRHLES-----ETENLD------KIDRELF 67 Query: 70 RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISE 129 ++ G + L+ + L I +IL G EL P V+I+E Sbjct: 68 VSLLRGATGAADELRGCFEPLLSR--PVAELSPIEHAILLLGTHELRHNLDTPYRVVINE 125 Query: 130 YVCIAHDFFYGDEPKFINAVLDKVS---RKEEIK 160 + +A + D KF+N VLDK+S R EE++ Sbjct: 126 AIELAKGYGGTDGHKFVNGVLDKLSTRLRPEEVE 159 >gi|87308019|ref|ZP_01090161.1| probable N utilization substance protein B-like [Blastopirellula marina DSM 3645] gi|87289101|gb|EAQ80993.1| probable N utilization substance protein B-like [Blastopirellula marina DSM 3645] Length = 137 Score = 45.8 bits (107), Expect = 0.002, Method: Compositional matrix adjust. Identities = 26/84 (30%), Positives = 45/84 (53%), Gaps = 2/84 (2%) Query: 70 RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISE 129 R ++ GV ++ ID I E WS +R+ + ++LR G E++ + P V I+E Sbjct: 48 RSLLVGVRLHRKAIDAKIE-AFAENWSLARMAVTDRNVLRIGAFEILFSET-PDRVAINE 105 Query: 130 YVCIAHDFFYGDEPKFINAVLDKV 153 V ++ F P+F+N +LD+V Sbjct: 106 AVELSKRFGSKHSPQFVNGLLDRV 129 >gi|88608227|ref|YP_506746.1| putative N utilization substance protein B [Neorickettsia sennetsu str. Miyayama] gi|88600396|gb|ABD45864.1| putative N utilization substance protein B [Neorickettsia sennetsu str. Miyayama] Length = 141 Score = 45.8 bits (107), Expect = 0.002, Method: Compositional matrix adjust. Identities = 37/143 (25%), Positives = 65/143 (45%), Gaps = 8/143 (5%) Query: 12 LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71 + + +ARL +++ Y +E+IS R E+ Y DLE Sbjct: 1 MPSEKRVARLLSIEVCYSSYFSDLPQSELIS-----RALELQEMPYMKRY---DLELLNS 52 Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131 I+ + + LI L+E+W +R+D + S+LR + EL ++I+EYV Sbjct: 53 ILDLCLANVEADTELIGRFLSEEWEINRIDNLKLSLLRVAISELRLSSVGQRNLVINEYV 112 Query: 132 CIAHDFFYGDEPKFINAVLDKVS 154 + F E F+NA+L+K++ Sbjct: 113 SLGGLFLSVKEVGFVNAILEKLA 135 >gi|46579608|ref|YP_010416.1| N utilization substance protein B [Desulfovibrio vulgaris str. Hildenborough] gi|120602904|ref|YP_967304.1| NusB antitermination factor [Desulfovibrio vulgaris DP4] gi|81566935|sp|Q72CT6|NUSB_DESVH RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|166215687|sp|A1VEL1|NUSB_DESVV RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|46449023|gb|AAS95675.1| N utilization substance protein B [Desulfovibrio vulgaris str. Hildenborough] gi|120563133|gb|ABM28877.1| NusB antitermination factor [Desulfovibrio vulgaris DP4] gi|311233412|gb|ADP86266.1| NusB antitermination factor [Desulfovibrio vulgaris RCH1] Length = 153 Score = 45.8 bits (107), Expect = 0.002, Method: Compositional matrix adjust. Identities = 36/149 (24%), Positives = 66/149 (44%), Gaps = 8/149 (5%) Query: 11 KLSHRRGIARLAAVQALYQIDIIGCSTTEIISE-YETYRFCADTELDVESVYLHVDLEWF 69 K + R AR A Q LY + ++ + + E Y + AD + +L Sbjct: 4 KGTPSRRAARALAFQILYGLGFSPAASVKQLREAYASSPDVADKGRSPQPEGFAWEL--- 60 Query: 70 RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISE 129 I G+ + +ID +I ++ W R+ + ++LR V E++ VP +V I+E Sbjct: 61 ---IEGIWTEQANIDEVIG-LFSQNWRIDRIGRVELTLLRIAVYEMLYRIDVPPKVAINE 116 Query: 130 YVCIAHDFFYGDEPKFINAVLDKVSRKEE 158 + ++ F + FIN +LD ++ E Sbjct: 117 ALELSKQFGDANARGFINGILDAAAKALE 145 >gi|326317709|ref|YP_004235381.1| NusB antitermination factor [Acidovorax avenae subsp. avenae ATCC 19860] gi|323374545|gb|ADX46814.1| NusB antitermination factor [Acidovorax avenae subsp. avenae ATCC 19860] Length = 186 Score = 45.8 bits (107), Expect = 0.002, Method: Compositional matrix adjust. Identities = 39/139 (28%), Positives = 65/139 (46%), Gaps = 13/139 (9%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 R +R A+QALYQ I+G + I F D S + D + ++HG Sbjct: 39 RSRSRAFALQALYQ-HIVGRNEATAIDV-----FTRDL-----SGFHKADAAHYDALLHG 87 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135 ++ + +D LI+ L + + I + + GV E C VP V+I+E V +A Sbjct: 88 CIENAETLDALITPKLDR--TLEEISPIEHATMWIGVYEFQHCLDVPWRVVINECVELAK 145 Query: 136 DFFYGDEPKFINAVLDKVS 154 +F D K++N VL+ ++ Sbjct: 146 EFGGTDGHKYVNGVLNGLA 164 >gi|254507845|ref|ZP_05119975.1| transcription antitermination factor NusB [Vibrio parahaemolyticus 16] gi|323491732|ref|ZP_08096910.1| transcription antitermination protein NusB [Vibrio brasiliensis LMG 20546] gi|323497970|ref|ZP_08102979.1| transcription antitermination protein NusB [Vibrio sinaloensis DSM 21326] gi|219549218|gb|EED26213.1| transcription antitermination factor NusB [Vibrio parahaemolyticus 16] gi|323314094|gb|EGA67180.1| transcription antitermination protein NusB [Vibrio brasiliensis LMG 20546] gi|323317015|gb|EGA70017.1| transcription antitermination protein NusB [Vibrio sinaloensis DSM 21326] Length = 155 Score = 45.8 bits (107), Expect = 0.002, Method: Compositional matrix adjust. Identities = 27/91 (29%), Positives = 46/91 (50%), Gaps = 2/91 (2%) Query: 64 VDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPV 123 D+ +FR ++ GV+ +D I LDM+ ++LR + E+ VP Sbjct: 61 TDVAYFRDLLTGVVLSHTELDSKIRPYTAR--PMQDLDMMELALLRLAMYEMTRREDVPY 118 Query: 124 EVIISEYVCIAHDFFYGDEPKFINAVLDKVS 154 +V+I+E + +A F + KF+N VLDK + Sbjct: 119 KVVINEAIELAKVFAAEESHKFVNGVLDKAA 149 >gi|166710625|ref|ZP_02241832.1| transcription antitermination protein NusB [Xanthomonas oryzae pv. oryzicola BLS256] Length = 156 Score = 45.8 bits (107), Expect = 0.002, Method: Compositional matrix adjust. Identities = 31/130 (23%), Positives = 57/130 (43%), Gaps = 13/130 (10%) Query: 25 QALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHID 84 QA+Y I G ++I+++ E + DL +F ++ GV+ + +D Sbjct: 30 QAVYAWQISGGFAKQVIAQFAH-----------EQAHEVADLAYFENLVEGVLTNRAELD 78 Query: 85 LLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPK 144 ++ L +D I ++LR EL+ VP V+I+E + A F Sbjct: 79 TALTPYLDR--GVEEVDAIERAVLRLAAYELLYRQDVPYRVLINEAIETAKRFGSEHGHT 136 Query: 145 FINAVLDKVS 154 ++N VLD+ + Sbjct: 137 YVNGVLDRAA 146 >gi|312883802|ref|ZP_07743521.1| transcription antitermination protein NusB [Vibrio caribbenthicus ATCC BAA-2122] gi|309368551|gb|EFP96084.1| transcription antitermination protein NusB [Vibrio caribbenthicus ATCC BAA-2122] Length = 155 Score = 45.8 bits (107), Expect = 0.002, Method: Compositional matrix adjust. Identities = 27/91 (29%), Positives = 46/91 (50%), Gaps = 2/91 (2%) Query: 64 VDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPV 123 D+ +FR ++ GV+ +D I LDM+ ++LR + E+ VP Sbjct: 61 TDVAYFRDLLTGVVLSHTELDSKIRPYTAR--PMQDLDMMELALLRLAMYEMTRREDVPY 118 Query: 124 EVIISEYVCIAHDFFYGDEPKFINAVLDKVS 154 +V+I+E + +A F + KF+N VLDK + Sbjct: 119 KVVINEAIELAKVFAAEESHKFVNGVLDKAA 149 >gi|257413800|ref|ZP_04744265.2| transcription antitermination factor NusB [Roseburia intestinalis L1-82] gi|257202253|gb|EEV00538.1| transcription antitermination factor NusB [Roseburia intestinalis L1-82] Length = 146 Score = 45.8 bits (107), Expect = 0.002, Method: Compositional matrix adjust. Identities = 22/81 (27%), Positives = 44/81 (54%), Gaps = 1/81 (1%) Query: 73 IHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVC 132 + + ++ + ID I+ ++E W R+ + +++R V E++ VP +V I+E V Sbjct: 66 VEKISEKLEEIDAKINE-VSEGWKTGRMGKVDLTLIRLAVYEMLYEEDVPAKVAINEAVE 124 Query: 133 IAHDFFYGDEPKFINAVLDKV 153 +A + + P F+N VL K+ Sbjct: 125 LAKQYGTDNSPSFVNGVLAKL 145 >gi|146329208|ref|YP_001209382.1| transcription antitermination factor NusB [Dichelobacter nodosus VCS1703A] gi|146232678|gb|ABQ13656.1| transcription antitermination factor NusB [Dichelobacter nodosus VCS1703A] Length = 145 Score = 45.8 bits (107), Expect = 0.002, Method: Compositional matrix adjust. Identities = 37/146 (25%), Positives = 67/146 (45%), Gaps = 13/146 (8%) Query: 15 RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74 +R AR +Q LYQ IIG EI+ E + +++ +D ++F Sbjct: 13 QRSQARRQLLQGLYQWQIIG-DDAEIVKENQM----------IDARAGEIDHDYFDAAWA 61 Query: 75 GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134 + + +D + + + + LD + +IL G+ EL + + VII+E V +A Sbjct: 62 YITTNTEQLDCCAADFIRR--NMATLDPVEHAILWIGIYELTQRIDIHQNVIINEAVELA 119 Query: 135 HDFFYGDEPKFINAVLDKVSRKEEIK 160 F D KF+N VLD+ +++ + Sbjct: 120 KQFGSDDGYKFVNGVLDQCAKRHRAR 145 >gi|326487822|dbj|BAK05583.1| predicted protein [Hordeum vulgare subsp. vulgare] Length = 546 Score = 45.8 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 28/89 (31%), Positives = 48/89 (53%), Gaps = 1/89 (1%) Query: 65 DLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVE 124 D+ VI+ G + K++ID LI S +E+ FS ++ +L ILR G E+++ +VP Sbjct: 131 DIRLVTVIVAGTVRWKRYIDYLIMSLCSEEKVFSNMEPLLLQILRIGFYEILKL-NVPAY 189 Query: 125 VIISEYVCIAHDFFYGDEPKFINAVLDKV 153 ++ E V +A +NA+L K+ Sbjct: 190 AVVDENVRLAKVALRPGAGNMVNAILRKL 218 >gi|261253734|ref|ZP_05946307.1| transcription termination protein NusB [Vibrio orientalis CIP 102891] gi|260937125|gb|EEX93114.1| transcription termination protein NusB [Vibrio orientalis CIP 102891] Length = 155 Score = 45.8 bits (107), Expect = 0.002, Method: Compositional matrix adjust. Identities = 27/91 (29%), Positives = 46/91 (50%), Gaps = 2/91 (2%) Query: 64 VDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPV 123 D+ +FR ++ GV+ +D I LDM+ ++LR + E+ VP Sbjct: 61 TDVAYFRDLLTGVVLSHTELDSKIRPYTAR--PMQDLDMMELALLRLAMYEMTRREDVPY 118 Query: 124 EVIISEYVCIAHDFFYGDEPKFINAVLDKVS 154 +V+I+E + +A F + KF+N VLDK + Sbjct: 119 KVVINEAIELAKVFAAEESHKFVNGVLDKAA 149 >gi|289578288|ref|YP_003476915.1| NusB antitermination factor [Thermoanaerobacter italicus Ab9] gi|297544568|ref|YP_003676870.1| NusB antitermination factor [Thermoanaerobacter mathranii subsp. mathranii str. A3] gi|289528001|gb|ADD02353.1| NusB antitermination factor [Thermoanaerobacter italicus Ab9] gi|296842343|gb|ADH60859.1| NusB antitermination factor [Thermoanaerobacter mathranii subsp. mathranii str. A3] Length = 140 Score = 45.8 bits (107), Expect = 0.002, Method: Compositional matrix adjust. Identities = 37/141 (26%), Positives = 62/141 (43%), Gaps = 14/141 (9%) Query: 15 RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74 R AR V+ LYQ DI ++I + + D + E+ + Sbjct: 2 NRTEAREWVVKMLYQYDISRFPISKIFDNFYKEKDPGDQK------------EYIENTVK 49 Query: 75 GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134 G ++ + ID I ++ W+ +R+ I +ILR + E+I ++PV + I+E V IA Sbjct: 50 GAIEHLEEIDKEIEK-YSQNWALNRMPRIDLAILRCSIYEMI-YGNIPVNISINEAVEIA 107 Query: 135 HDFFYGDEPKFINAVLDKVSR 155 + D FIN +L R Sbjct: 108 KKYSTEDSHVFINGLLGAFVR 128 >gi|257453620|ref|ZP_05618910.1| NusB antitermination factor [Enhydrobacter aerosaccus SK60] gi|257449078|gb|EEV24031.1| NusB antitermination factor [Enhydrobacter aerosaccus SK60] Length = 186 Score = 45.8 bits (107), Expect = 0.002, Method: Compositional matrix adjust. Identities = 34/137 (24%), Positives = 64/137 (46%), Gaps = 13/137 (9%) Query: 19 ARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMD 78 AR VQ LY+ + G + EI + + E+ V L ++ ++ +++ Sbjct: 31 ARRFVVQGLYEWLLTGNPSHEIEAHTRS-----------ENAMHTVHLGYYHELLSKIIE 79 Query: 79 RKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFF 138 + + I S L W+ RLD + ++L G E+ + VP +V+I E + + F Sbjct: 80 QSDDLIAYIDSLLNRPWT--RLDKVEQAVLLVGAYEMKQHLEVPYKVVIDEAIQLNTHFG 137 Query: 139 YGDEPKFINAVLDKVSR 155 D K I+ V+DK+++ Sbjct: 138 SSDGYKMIHVVMDKIAK 154 >gi|322387215|ref|ZP_08060825.1| N utilization substance protein B [Streptococcus infantis ATCC 700779] gi|321141744|gb|EFX37239.1| N utilization substance protein B [Streptococcus infantis ATCC 700779] Length = 140 Score = 45.8 bits (107), Expect = 0.002, Method: Compositional matrix adjust. Identities = 25/86 (29%), Positives = 44/86 (51%), Gaps = 1/86 (1%) Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131 ++ GV +K+ +D I+ L W+ RL ++ ++LR GV E I P V ++E + Sbjct: 55 LVSGVQAQKEELDKQITQHLKSGWTIERLTLVEKNLLRLGVFE-ITSFDTPQLVAVNEAI 113 Query: 132 CIAHDFFYGDEPKFINAVLDKVSRKE 157 +A F +FIN +L + +E Sbjct: 114 ELAKSFSDQKSARFINGLLSQFVTEE 139 >gi|315453162|ref|YP_004073432.1| N utilization substance protein B-like protein [Helicobacter felis ATCC 49179] gi|315132214|emb|CBY82842.1| N utilization substance protein B homolog [Helicobacter felis ATCC 49179] Length = 134 Score = 45.8 bits (107), Expect = 0.002, Method: Compositional matrix adjust. Identities = 22/86 (25%), Positives = 50/86 (58%), Gaps = 2/86 (2%) Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131 ++ G ++ +D ++ L + W +R+ + +ILR G E++ + PV V+I+E + Sbjct: 49 LLEGTLEHLPSLDNALTPLLKD-WDLARIGSMERAILRLGAYEILHTPTNPV-VVINEAI 106 Query: 132 CIAHDFFYGDEPKFINAVLDKVSRKE 157 ++ ++ + PK INA+LD + +++ Sbjct: 107 ELSKNYGEDNAPKLINAILDALCKQK 132 >gi|91216596|ref|ZP_01253562.1| putative N utilization substance protein [Psychroflexus torquis ATCC 700755] gi|91185390|gb|EAS71767.1| putative N utilization substance protein [Psychroflexus torquis ATCC 700755] Length = 302 Score = 45.4 bits (106), Expect = 0.002, Method: Compositional matrix adjust. Identities = 25/82 (30%), Positives = 44/82 (53%), Gaps = 2/82 (2%) Query: 87 ISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFI 146 I+ T W R+ I +++ + E ++ S+PV V I+EY+ +A ++ FI Sbjct: 218 ITKNKTPNWDQDRIADIDSILIKMALCEFLKFPSIPVRVTINEYLELAKEYSTPKSSTFI 277 Query: 147 NAVLDKVSRKEEIKRSGCVSAI 168 N VLD VS+ E + +G ++ I Sbjct: 278 NGVLDTVSK--EYQTNGKINKI 297 >gi|309799755|ref|ZP_07693969.1| transcription antitermination factor NusB [Streptococcus infantis SK1302] gi|308116621|gb|EFO54083.1| transcription antitermination factor NusB [Streptococcus infantis SK1302] Length = 140 Score = 45.4 bits (106), Expect = 0.002, Method: Compositional matrix adjust. Identities = 25/87 (28%), Positives = 45/87 (51%), Gaps = 1/87 (1%) Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131 ++ GV +K +D I+ L W+ +RL ++ ++LR GV E I P V ++E + Sbjct: 55 LVSGVQAKKDDLDKQITQHLKTGWTINRLTLVEKNLLRLGVFE-ITSFDTPQLVAVNEAI 113 Query: 132 CIAHDFFYGDEPKFINAVLDKVSRKEE 158 +A F +FIN +L + +E+ Sbjct: 114 ELAKSFSDQKSARFINGLLSQFVTEED 140 >gi|145588452|ref|YP_001155049.1| NusB antitermination factor [Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1] gi|145046858|gb|ABP33485.1| NusB antitermination factor [Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1] Length = 174 Score = 45.4 bits (106), Expect = 0.002, Method: Compositional matrix adjust. Identities = 30/103 (29%), Positives = 52/103 (50%), Gaps = 2/103 (1%) Query: 54 ELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVL 113 +L + + L+ F+ I GV++R ++ +I+ L + L + + L G Sbjct: 65 QLGEDPAFRRCQLDLFQGIFDGVLERTDELEAIITPALDR--PINELSPVEHAALLIGAY 122 Query: 114 ELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRK 156 EL SVP +V I+E V +A F D K++N VLD +++K Sbjct: 123 ELAIDLSVPYKVAINEAVELAKTFGGTDGHKYVNGVLDLLAQK 165 >gi|329119641|ref|ZP_08248322.1| transcription antitermination factor NusB [Neisseria bacilliformis ATCC BAA-1200] gi|327464238|gb|EGF10542.1| transcription antitermination factor NusB [Neisseria bacilliformis ATCC BAA-1200] Length = 142 Score = 45.4 bits (106), Expect = 0.002, Method: Compositional matrix adjust. Identities = 43/155 (27%), Positives = 65/155 (41%), Gaps = 17/155 (10%) Query: 10 LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF 69 +K S RR AR AVQALYQ + G S ++ + R +D Y D E F Sbjct: 1 MKTSPRR-RAREFAVQALYQCALNGASAVQVA---QNIREASD--------YPRADGELF 48 Query: 70 RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISE 129 + G D I L ++ + +IL EL P VII+E Sbjct: 49 TALFFGAHDNGGEYMQRIRPLLDRDEK--DINPVERAILLMACHELAAMPETPYPVIINE 106 Query: 130 YVCIAHDFFYGDEPKFINAVLDKVS---RKEEIKR 161 + + + D KF+N +LD+++ R ++ KR Sbjct: 107 AIEVTKTYGGTDSHKFVNGILDRLAAELRPDDPKR 141 >gi|291536362|emb|CBL09474.1| transcription antitermination factor NusB [Roseburia intestinalis M50/1] gi|291538768|emb|CBL11879.1| transcription antitermination factor NusB [Roseburia intestinalis XB6B4] Length = 137 Score = 45.4 bits (106), Expect = 0.002, Method: Compositional matrix adjust. Identities = 22/81 (27%), Positives = 44/81 (54%), Gaps = 1/81 (1%) Query: 73 IHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVC 132 + + ++ + ID I+ ++E W R+ + +++R V E++ VP +V I+E V Sbjct: 57 VEKISEKLEEIDAKINE-VSEGWKTGRMGKVDLTLIRLAVYEMLYEEDVPAKVAINEAVE 115 Query: 133 IAHDFFYGDEPKFINAVLDKV 153 +A + + P F+N VL K+ Sbjct: 116 LAKQYGTDNSPSFVNGVLAKL 136 >gi|260775291|ref|ZP_05884188.1| transcription termination protein NusB [Vibrio coralliilyticus ATCC BAA-450] gi|260608472|gb|EEX34637.1| transcription termination protein NusB [Vibrio coralliilyticus ATCC BAA-450] Length = 155 Score = 45.4 bits (106), Expect = 0.002, Method: Compositional matrix adjust. Identities = 27/91 (29%), Positives = 46/91 (50%), Gaps = 2/91 (2%) Query: 64 VDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPV 123 D+ +FR ++ GV+ +D I LDM+ ++LR + E+ VP Sbjct: 61 TDVAYFRDLLTGVVLSHTELDSKIRPYTAR--PMQDLDMMELALLRLAMYEMTRREDVPY 118 Query: 124 EVIISEYVCIAHDFFYGDEPKFINAVLDKVS 154 +V+I+E + +A F + KF+N VLDK + Sbjct: 119 KVVINEAIELAKVFAAEESHKFVNGVLDKAA 149 >gi|304382450|ref|ZP_07364948.1| NusB family protein [Prevotella marshii DSM 16973] gi|304336403|gb|EFM02641.1| NusB family protein [Prevotella marshii DSM 16973] Length = 329 Score = 45.4 bits (106), Expect = 0.002, Method: Compositional matrix adjust. Identities = 26/87 (29%), Positives = 44/87 (50%), Gaps = 5/87 (5%) Query: 69 FRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIIS 128 FR I D+ QH S + W FSRL + I++ + E++ ++P+ V I+ Sbjct: 215 FRATILNA-DQYQHY----MSETSRNWDFSRLAYMDVVIMQIAIAEMLTFPNIPISVTIN 269 Query: 129 EYVCIAHDFFYGDEPKFINAVLDKVSR 155 EYV +A + +IN +LD ++R Sbjct: 270 EYVELAKLYSTPKSGAYINGMLDTIAR 296 >gi|312868252|ref|ZP_07728452.1| transcription antitermination factor NusB [Streptococcus parasanguinis F0405] gi|311095997|gb|EFQ54241.1| transcription antitermination factor NusB [Streptococcus parasanguinis F0405] Length = 143 Score = 45.4 bits (106), Expect = 0.002, Method: Compositional matrix adjust. Identities = 30/96 (31%), Positives = 48/96 (50%), Gaps = 2/96 (2%) Query: 63 HVDLEWFRV-IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSV 121 VDL F + ++ GV K +D I L W+ RL ++ +ILR G+ E+ E + Sbjct: 49 EVDLPAFLMNLVTGVYQSKDQLDQQIGQHLKTGWTVERLTLVEKNILRLGIYEITEFDT- 107 Query: 122 PVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKE 157 P V ++E V +A F +F+N VL + +E Sbjct: 108 PQIVAVNEAVELAKAFSDETSSRFVNGVLSQFVTEE 143 >gi|297559856|ref|YP_003678830.1| NusB antitermination factor [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] gi|296844304|gb|ADH66324.1| NusB antitermination factor [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] Length = 137 Score = 45.4 bits (106), Expect = 0.003, Method: Compositional matrix adjust. Identities = 22/82 (26%), Positives = 44/82 (53%), Gaps = 1/82 (1%) Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131 + V +R++ ID L+ + W+ R+ ++ +ILR G EL+ +P V I+E V Sbjct: 48 LARSVDERRERIDELLDTYAI-GWTLERMPVVDRNILRMGAYELLWADDIPDGVAIAEAV 106 Query: 132 CIAHDFFYGDEPKFINAVLDKV 153 +A + + P F++ +L ++ Sbjct: 107 GVAKELSTDESPNFVSGLLSRL 128 >gi|307566362|ref|ZP_07628801.1| transcription antitermination factor NusB [Prevotella amnii CRIS 21A-A] gi|307344939|gb|EFN90337.1| transcription antitermination factor NusB [Prevotella amnii CRIS 21A-A] Length = 313 Score = 45.4 bits (106), Expect = 0.003, Method: Compositional matrix adjust. Identities = 25/90 (27%), Positives = 45/90 (50%), Gaps = 12/90 (13%) Query: 78 DRKQHIDLLISSCL------------TEKWSFSRLDMILCSILRAGVLELIECHSVPVEV 125 DRK IDL ++ + + W FSRL + I++ + E++ ++P+ V Sbjct: 182 DRKFAIDLFRATIINAEVYQGYMSQASRNWDFSRLAYMDVVIMQIAIAEMVNFPNIPINV 241 Query: 126 IISEYVCIAHDFFYGDEPKFINAVLDKVSR 155 I+EYV +A + +IN +LD ++R Sbjct: 242 SINEYVNLAKLYSTPRSGGYINGMLDSIAR 271 >gi|163790822|ref|ZP_02185247.1| Sun protein [Carnobacterium sp. AT7] gi|159873890|gb|EDP67969.1| Sun protein [Carnobacterium sp. AT7] Length = 458 Score = 45.4 bits (106), Expect = 0.003, Method: Compositional matrix adjust. Identities = 40/143 (27%), Positives = 64/143 (44%), Gaps = 18/143 (12%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISE--YETYRFCADTELDVESVYLHVDLEWFRVII 73 + +R A+ L + D G + +I+E + AD L E VY Sbjct: 13 KKTSRYLAMSILERTDKTGSYSNLLINEAIQKNKLSAADARLLTELVY------------ 60 Query: 74 HGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCI 133 GV+ RK +D +SS L E ++D+ + ++LR + ++I +PV I+ E V + Sbjct: 61 -GVLQRKLTLDFYLSSFLAED---KKIDIWVRNLLRLSIYQMIYLDKIPVHAILFEAVEV 116 Query: 134 AHDFFYGDEPKFINAVLDKVSRK 156 A + KFIN VL RK Sbjct: 117 AKKKGHIGISKFINGVLRNADRK 139 >gi|120610904|ref|YP_970582.1| NusB antitermination factor [Acidovorax citrulli AAC00-1] gi|120589368|gb|ABM32808.1| NusB antitermination factor [Acidovorax citrulli AAC00-1] Length = 186 Score = 45.4 bits (106), Expect = 0.003, Method: Compositional matrix adjust. Identities = 39/139 (28%), Positives = 64/139 (46%), Gaps = 13/139 (9%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 R +R A+QALYQ I+G + I F D S + D + ++HG Sbjct: 39 RSRSRAFALQALYQ-HIVGRNEATAIDV-----FTRDL-----SGFHKADAAHYDALLHG 87 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135 ++ +D LI+ L + + I + + GV E C VP V+I+E V +A Sbjct: 88 CIENAGALDALIAPKLDR--TLEEISPIEHATMWIGVYEFQNCLDVPWRVVINECVELAK 145 Query: 136 DFFYGDEPKFINAVLDKVS 154 +F D K++N VL+ ++ Sbjct: 146 EFGGTDGHKYVNGVLNGLA 164 >gi|57237437|ref|YP_178450.1| transcription antitermination protein NusB [Campylobacter jejuni RM1221] gi|86148965|ref|ZP_01067197.1| transcription antitermination factor NusB [Campylobacter jejuni subsp. jejuni CF93-6] gi|88597364|ref|ZP_01100599.1| transcription antitermination factor NusB [Campylobacter jejuni subsp. jejuni 84-25] gi|148926474|ref|ZP_01810157.1| transcription termination protein [Campylobacter jejuni subsp. jejuni CG8486] gi|205355968|ref|ZP_03222736.1| transcription termination protein [Campylobacter jejuni subsp. jejuni CG8421] gi|218562040|ref|YP_002343819.1| transcription antitermination protein NusB [Campylobacter jejuni subsp. jejuni NCTC 11168] gi|22095973|sp|Q9PIC0|NUSB_CAMJE RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|73621331|sp|Q5HW85|NUSB_CAMJR RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|57166241|gb|AAW35020.1| transcription antitermination factor NusB [Campylobacter jejuni RM1221] gi|85840323|gb|EAQ57580.1| transcription antitermination factor NusB [Campylobacter jejuni subsp. jejuni CF93-6] gi|88190425|gb|EAQ94399.1| transcription antitermination factor NusB [Campylobacter jejuni subsp. jejuni 84-25] gi|112359746|emb|CAL34532.1| transcription termination protein [Campylobacter jejuni subsp. jejuni NCTC 11168] gi|145844637|gb|EDK21743.1| transcription termination protein [Campylobacter jejuni subsp. jejuni CG8486] gi|205346092|gb|EDZ32727.1| transcription termination protein [Campylobacter jejuni subsp. jejuni CG8421] gi|284925653|gb|ADC28005.1| transcription antitermination protein NusB [Campylobacter jejuni subsp. jejuni IA3902] gi|315057805|gb|ADT72134.1| Transcription termination protein NusB [Campylobacter jejuni subsp. jejuni S3] gi|315926706|gb|EFV06085.1| transcription antitermination factor NusB [Campylobacter jejuni subsp. jejuni DFVF1099] Length = 132 Score = 45.4 bits (106), Expect = 0.003, Method: Compositional matrix adjust. Identities = 25/78 (32%), Positives = 44/78 (56%), Gaps = 2/78 (2%) Query: 74 HGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCI 133 +G++D +ID ++S L + + L + +ILR G EL+ + P ++I+E + + Sbjct: 50 NGILDNLNNIDETLNSFLNDNQ-ITALGHVERAILRLGAYELLFTDT-PSAIVINEAIEL 107 Query: 134 AHDFFYGDEPKFINAVLD 151 A + + PKFIN VLD Sbjct: 108 AKELANDNSPKFINGVLD 125 >gi|308272930|emb|CBX29534.1| N utilization substance protein B homolog [uncultured Desulfobacterium sp.] Length = 90 Score = 45.4 bits (106), Expect = 0.003, Method: Compositional matrix adjust. Identities = 24/77 (31%), Positives = 38/77 (49%), Gaps = 1/77 (1%) Query: 77 MDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHD 136 M ID +I + W SR+ + +I+R V EL+ C +P +V I+E + I Sbjct: 1 MSSAPEIDGIIER-FSSNWKISRMSCVDRNIMRIAVFELVWCDDIPCKVSINEAIDIGKK 59 Query: 137 FFYGDEPKFINAVLDKV 153 + + FIN +LD V Sbjct: 60 YGTDESGPFINGILDSV 76 >gi|239627505|ref|ZP_04670536.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA] gi|239517651|gb|EEQ57517.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA] Length = 149 Score = 45.4 bits (106), Expect = 0.003, Method: Compositional matrix adjust. Identities = 23/86 (26%), Positives = 43/86 (50%), Gaps = 1/86 (1%) Query: 65 DLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVE 124 D E+ + ++D+ ID ++ W R+ + +ILR + E++ ++P + Sbjct: 60 DSEYLQARTVNIIDKIPEIDAKLNEVAA-GWKTKRMGKVELTILRLALFEMLYDENIPEK 118 Query: 125 VIISEYVCIAHDFFYGDEPKFINAVL 150 V I+E V +A F D P F+N +L Sbjct: 119 VSINEAVELAKKFGGNDSPAFVNGIL 144 >gi|226226881|ref|YP_002760987.1| antitermination protein NusB [Gemmatimonas aurantiaca T-27] gi|226090072|dbj|BAH38517.1| antitermination protein NusB [Gemmatimonas aurantiaca T-27] Length = 157 Score = 45.4 bits (106), Expect = 0.003, Method: Compositional matrix adjust. Identities = 27/85 (31%), Positives = 41/85 (48%), Gaps = 2/85 (2%) Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131 +I V DR +D + +T W RL I S+LR EL PV+V++ E V Sbjct: 71 LIATVADRGAVLDAALVE-VTANWRLERLGAIERSVLRLAAAELAR-EETPVKVVLQEAV 128 Query: 132 CIAHDFFYGDEPKFINAVLDKVSRK 156 +A + +F+N VLD +R+ Sbjct: 129 HLAERYGTERSARFVNGVLDAYARR 153 >gi|307710564|ref|ZP_07646999.1| transcription antitermination factor NusB [Streptococcus mitis SK564] gi|307618672|gb|EFN97813.1| transcription antitermination factor NusB [Streptococcus mitis SK564] Length = 141 Score = 45.1 bits (105), Expect = 0.003, Method: Compositional matrix adjust. Identities = 23/86 (26%), Positives = 45/86 (52%), Gaps = 1/86 (1%) Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131 ++ G+ +K+ +D I+ L W+ RL ++ ++LR G+ E I P V ++E + Sbjct: 55 LVSGIQAQKEELDKQINQHLKSGWTVERLTLVEKNLLRLGIFE-ITSFDTPQLVAVNEAI 113 Query: 132 CIAHDFFYGDEPKFINAVLDKVSRKE 157 +A +F +FIN +L + +E Sbjct: 114 ELAKNFSDQKSARFINGLLSQFVTEE 139 >gi|160947152|ref|ZP_02094319.1| hypothetical protein PEPMIC_01084 [Parvimonas micra ATCC 33270] gi|158446286|gb|EDP23281.1| hypothetical protein PEPMIC_01084 [Parvimonas micra ATCC 33270] Length = 134 Score = 45.1 bits (105), Expect = 0.003, Method: Compositional matrix adjust. Identities = 30/108 (27%), Positives = 54/108 (50%), Gaps = 5/108 (4%) Query: 56 DVESVYLHVDL-----EWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRA 110 ++ES + DL ++ R ++D +ID +I L W+++R+ I +ILR Sbjct: 27 EIESFIEYFDLPSSEVKYIRKNCKSIIDNLDNIDNIIKENLEGCWNYNRIAKIDLAILRV 86 Query: 111 GVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEE 158 V E+ +P V I+E + IA+ + KFIN +L + R ++ Sbjct: 87 AVNEIYYLDDIPESVAINEAIEIANKYSTDASYKFINGILGTIVRAKK 134 >gi|261380112|ref|ZP_05984685.1| transcription antitermination factor NusB [Neisseria subflava NJ9703] gi|284797333|gb|EFC52680.1| transcription antitermination factor NusB [Neisseria subflava NJ9703] Length = 142 Score = 45.1 bits (105), Expect = 0.003, Method: Compositional matrix adjust. Identities = 50/163 (30%), Positives = 70/163 (42%), Gaps = 30/163 (18%) Query: 10 LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF 69 +K RR AR AVQA+YQ I + EI EL S ++D E F Sbjct: 1 MKSPRRR--ARELAVQAIYQAGINKTAAPEIAKNIR--------EL---SQAPNMDEELF 47 Query: 70 RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSV------PV 123 + G + IS L R + L I RA VL L+ CH + P Sbjct: 48 NKLFFGAQTHAEEYMEKISPLL------DRDEKDLSPIERA-VL-LVACHELSTMPETPY 99 Query: 124 EVIISEYVCIAHDFFYGDEPKFINAVLDKVS---RKEEIKRSG 163 VII+E + + F D KF+N +LD+++ R +E +R G Sbjct: 100 PVIINEAIEVTKTFGGTDGHKFVNGILDQLASRIRPDEPRRKG 142 >gi|167837551|ref|ZP_02464434.1| transcription antitermination protein NusB [Burkholderia thailandensis MSMB43] Length = 145 Score = 45.1 bits (105), Expect = 0.003, Method: Compositional matrix adjust. Identities = 42/147 (28%), Positives = 63/147 (42%), Gaps = 14/147 (9%) Query: 10 LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF 69 +K S RR +R A Q LYQ + + EI D +L Y D Sbjct: 1 MKKSARRQ-SRELATQGLYQWLLSNAAPGEI-----------DAQLRGALGYDKADKTLL 48 Query: 70 RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISE 129 I+HGV+ ++H L + + +L + ++L EL P VII+E Sbjct: 49 DTILHGVI--REHATLAEAISPSLDRPIDQLSPVERAVLLIATYELTHQIETPYRVIINE 106 Query: 130 YVCIAHDFFYGDEPKFINAVLDKVSRK 156 V +A F D K++N VLDK++ K Sbjct: 107 AVELAKTFGGSDGYKYVNGVLDKLAVK 133 >gi|302345746|ref|YP_003814099.1| transcription antitermination factor NusB [Prevotella melaninogenica ATCC 25845] gi|302149617|gb|ADK95879.1| transcription antitermination factor NusB [Prevotella melaninogenica ATCC 25845] Length = 333 Score = 45.1 bits (105), Expect = 0.003, Method: Compositional matrix adjust. Identities = 26/90 (28%), Positives = 47/90 (52%), Gaps = 5/90 (5%) Query: 66 LEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEV 125 L+ FR I D ++++ S + W FSRL + I++ + E++ ++PV V Sbjct: 187 LKLFRSTILNADDYQRYM-----SESSRNWDFSRLAYMDVVIMQIAIAEMLTFPNIPVTV 241 Query: 126 IISEYVCIAHDFFYGDEPKFINAVLDKVSR 155 I+EYV +A + +IN +LD ++R Sbjct: 242 TINEYVDLAKLYSTPRSGGYINGMLDTIAR 271 >gi|167720799|ref|ZP_02404035.1| transcription antitermination protein NusB [Burkholderia pseudomallei DM98] Length = 145 Score = 45.1 bits (105), Expect = 0.003, Method: Compositional matrix adjust. Identities = 42/147 (28%), Positives = 63/147 (42%), Gaps = 14/147 (9%) Query: 10 LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF 69 +K S RR +R A Q LYQ + + EI D +L Y D Sbjct: 1 MKKSARRQ-SRELATQGLYQWLLSNAAPGEI-----------DAQLRGALGYDKADKTLL 48 Query: 70 RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISE 129 I+HGV+ ++H L + + +L + ++L EL P VII+E Sbjct: 49 DTILHGVI--REHATLAEAISPSLDRPIEQLSPVERAVLLIATYELTHQIETPYRVIINE 106 Query: 130 YVCIAHDFFYGDEPKFINAVLDKVSRK 156 V +A F D K++N VLDK++ K Sbjct: 107 AVELAKTFGGSDGYKYVNGVLDKLAVK 133 >gi|53720238|ref|YP_109224.1| transcription antitermination protein NusB [Burkholderia pseudomallei K96243] gi|53725935|ref|YP_103717.1| transcription antitermination protein NusB [Burkholderia mallei ATCC 23344] gi|67643981|ref|ZP_00442724.1| transcription antitermination factor NusB [Burkholderia mallei GB8 horse 4] gi|83718415|ref|YP_442074.1| transcription antitermination protein NusB [Burkholderia thailandensis E264] gi|121599031|ref|YP_992107.1| transcription antitermination protein NusB [Burkholderia mallei SAVP1] gi|124385249|ref|YP_001028552.1| transcription antitermination protein NusB [Burkholderia mallei NCTC 10229] gi|126438627|ref|YP_001060031.1| transcription antitermination protein NusB [Burkholderia pseudomallei 668] gi|126448499|ref|YP_001081550.1| transcription antitermination protein NusB [Burkholderia mallei NCTC 10247] gi|126452933|ref|YP_001067310.1| transcription antitermination protein NusB [Burkholderia pseudomallei 1106a] gi|134280178|ref|ZP_01766889.1| transcription antitermination factor NusB [Burkholderia pseudomallei 305] gi|166998350|ref|ZP_02264210.1| transcription antitermination factor NusB [Burkholderia mallei PRL-20] gi|167580929|ref|ZP_02373803.1| transcription antitermination protein NusB [Burkholderia thailandensis TXDOH] gi|167619020|ref|ZP_02387651.1| transcription antitermination protein NusB [Burkholderia thailandensis Bt4] gi|167739782|ref|ZP_02412556.1| transcription antitermination protein NusB [Burkholderia pseudomallei 14] gi|167817004|ref|ZP_02448684.1| transcription antitermination protein NusB [Burkholderia pseudomallei 91] gi|167825416|ref|ZP_02456887.1| transcription antitermination protein NusB [Burkholderia pseudomallei 9] gi|167846905|ref|ZP_02472413.1| transcription antitermination protein NusB [Burkholderia pseudomallei B7210] gi|167895484|ref|ZP_02482886.1| transcription antitermination protein NusB [Burkholderia pseudomallei 7894] gi|167903866|ref|ZP_02491071.1| transcription antitermination protein NusB [Burkholderia pseudomallei NCTC 13177] gi|167912133|ref|ZP_02499224.1| transcription antitermination protein NusB [Burkholderia pseudomallei 112] gi|167920107|ref|ZP_02507198.1| transcription antitermination protein NusB [Burkholderia pseudomallei BCC215] gi|217420428|ref|ZP_03451933.1| transcription antitermination factor NusB [Burkholderia pseudomallei 576] gi|226193837|ref|ZP_03789439.1| transcription antitermination factor NusB [Burkholderia pseudomallei Pakistan 9] gi|237813433|ref|YP_002897884.1| transcription antitermination factor NusB [Burkholderia pseudomallei MSHR346] gi|242315882|ref|ZP_04814898.1| transcription antitermination factor NusB [Burkholderia pseudomallei 1106b] gi|254175420|ref|ZP_04882080.1| transcription antitermination factor NusB [Burkholderia mallei ATCC 10399] gi|254191824|ref|ZP_04898327.1| transcription antitermination factor NusB [Burkholderia pseudomallei Pasteur 52237] gi|254196083|ref|ZP_04902508.1| transcription antitermination factor NusB [Burkholderia pseudomallei S13] gi|254202417|ref|ZP_04908780.1| transcription antitermination factor NusB [Burkholderia mallei FMH] gi|254207748|ref|ZP_04914098.1| transcription antitermination factor NusB [Burkholderia mallei JHU] gi|254261365|ref|ZP_04952419.1| transcription antitermination factor NusB [Burkholderia pseudomallei 1710a] gi|254298898|ref|ZP_04966348.1| transcription antitermination factor NusB [Burkholderia pseudomallei 406e] gi|254356350|ref|ZP_04972626.1| transcription antitermination factor NusB [Burkholderia mallei 2002721280] gi|257138259|ref|ZP_05586521.1| transcription antitermination protein NusB [Burkholderia thailandensis E264] gi|81604460|sp|Q62HV3|NUSB_BURMA RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|81607761|sp|Q63RP4|NUSB_BURPS RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|119372283|sp|Q2SYC5|NUSB_BURTA RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|166215667|sp|A3MMR4|NUSB_BURM7 RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|166215668|sp|A2S9D3|NUSB_BURM9 RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|166215669|sp|A1V1K4|NUSB_BURMS RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|166215670|sp|A3NY89|NUSB_BURP0 RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|166215671|sp|A3NCG0|NUSB_BURP6 RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|52210652|emb|CAH36636.1| probable N utilization substance protein B [Burkholderia pseudomallei K96243] gi|52429358|gb|AAU49951.1| N utilization substance protein B [Burkholderia mallei ATCC 23344] gi|83652240|gb|ABC36303.1| transcription antitermination factor NusB [Burkholderia thailandensis E264] gi|121227841|gb|ABM50359.1| transcription antitermination factor NusB [Burkholderia mallei SAVP1] gi|124293269|gb|ABN02538.1| N utilization substance protein B [Burkholderia mallei NCTC 10229] gi|126218120|gb|ABN81626.1| transcription antitermination factor NusB [Burkholderia pseudomallei 668] gi|126226575|gb|ABN90115.1| transcription antitermination factor NusB [Burkholderia pseudomallei 1106a] gi|126241369|gb|ABO04462.1| transcription antitermination factor NusB [Burkholderia mallei NCTC 10247] gi|134248185|gb|EBA48268.1| transcription antitermination factor NusB [Burkholderia pseudomallei 305] gi|147746664|gb|EDK53741.1| transcription antitermination factor NusB [Burkholderia mallei FMH] gi|147751642|gb|EDK58709.1| transcription antitermination factor NusB [Burkholderia mallei JHU] gi|148025347|gb|EDK83501.1| transcription antitermination factor NusB [Burkholderia mallei 2002721280] gi|157809075|gb|EDO86245.1| transcription antitermination factor NusB [Burkholderia pseudomallei 406e] gi|157939495|gb|EDO95165.1| transcription antitermination factor NusB [Burkholderia pseudomallei Pasteur 52237] gi|160696464|gb|EDP86434.1| transcription antitermination factor NusB [Burkholderia mallei ATCC 10399] gi|169652827|gb|EDS85520.1| transcription antitermination factor NusB [Burkholderia pseudomallei S13] gi|217395840|gb|EEC35857.1| transcription antitermination factor NusB [Burkholderia pseudomallei 576] gi|225934142|gb|EEH30127.1| transcription antitermination factor NusB [Burkholderia pseudomallei Pakistan 9] gi|237505806|gb|ACQ98124.1| transcription antitermination factor NusB [Burkholderia pseudomallei MSHR346] gi|238525458|gb|EEP88886.1| transcription antitermination factor NusB [Burkholderia mallei GB8 horse 4] gi|242139121|gb|EES25523.1| transcription antitermination factor NusB [Burkholderia pseudomallei 1106b] gi|243065419|gb|EES47605.1| transcription antitermination factor NusB [Burkholderia mallei PRL-20] gi|254220054|gb|EET09438.1| transcription antitermination factor NusB [Burkholderia pseudomallei 1710a] Length = 145 Score = 45.1 bits (105), Expect = 0.003, Method: Compositional matrix adjust. Identities = 42/147 (28%), Positives = 63/147 (42%), Gaps = 14/147 (9%) Query: 10 LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF 69 +K S RR +R A Q LYQ + + EI D +L Y D Sbjct: 1 MKKSARRQ-SRELATQGLYQWLLSNAAPGEI-----------DAQLRGALGYDKADKTLL 48 Query: 70 RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISE 129 I+HGV+ ++H L + + +L + ++L EL P VII+E Sbjct: 49 DTILHGVI--REHATLAEAISPSLDRPIDQLSPVERAVLLIATYELTHQIETPYRVIINE 106 Query: 130 YVCIAHDFFYGDEPKFINAVLDKVSRK 156 V +A F D K++N VLDK++ K Sbjct: 107 AVELAKTFGGSDGYKYVNGVLDKLAVK 133 >gi|239905097|ref|YP_002951836.1| N utilization substance protein B homolog [Desulfovibrio magneticus RS-1] gi|239794961|dbj|BAH73950.1| N utilization substance protein B homolog [Desulfovibrio magneticus RS-1] Length = 159 Score = 45.1 bits (105), Expect = 0.003, Method: Compositional matrix adjust. Identities = 44/157 (28%), Positives = 72/157 (45%), Gaps = 13/157 (8%) Query: 1 MTIQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESV 60 MT D+KK + +S R+ AR A + LY G S E R DV Sbjct: 1 MTESDDKKPI-VSRRK--ARKQAFEFLY-----GLSFEPAADERSLLRLFKRCPHDVAEG 52 Query: 61 YLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHS 120 E+ ++ GV ++ ID I ++ W SR+ + +ILR V E++ Sbjct: 53 EDDAGHEFAWELVLGVWRNQRDIDATIVR-FSKNWKISRIAKVELTILRLAVHEILSRPD 111 Query: 121 VPVEVIISEYVCIAHDFFYGDEP--KFINAVLDKVSR 155 +P+ V ++E + ++ YGDE FIN +LD +++ Sbjct: 112 IPLRVSLNEAIELSKR--YGDENSRNFINGILDALAK 146 >gi|319639180|ref|ZP_07993931.1| N utilization substance protein B [Neisseria mucosa C102] gi|317399364|gb|EFV80034.1| N utilization substance protein B [Neisseria mucosa C102] Length = 142 Score = 45.1 bits (105), Expect = 0.003, Method: Compositional matrix adjust. Identities = 50/163 (30%), Positives = 70/163 (42%), Gaps = 30/163 (18%) Query: 10 LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF 69 +K RR AR AVQA+YQ I + EI EL S ++D E F Sbjct: 1 MKSPRRR--ARELAVQAIYQAGINKTAAPEIAKNIH--------ELSQSS---NMDEELF 47 Query: 70 RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSV------PV 123 + G + IS L R + L I RA VL L+ CH + P Sbjct: 48 NKLFFGAQTHAEEYMEKISPLL------DRDEKDLSPIERA-VL-LVACHELSTMPETPY 99 Query: 124 EVIISEYVCIAHDFFYGDEPKFINAVLDKVS---RKEEIKRSG 163 VII+E + + F D KF+N +LD+++ R +E +R G Sbjct: 100 PVIINEAIEVTKTFGGTDGHKFVNGILDQLASRIRPDEPRRKG 142 >gi|121611696|ref|YP_999503.1| NusB antitermination factor [Verminephrobacter eiseniae EF01-2] gi|121556336|gb|ABM60485.1| NusB antitermination factor [Verminephrobacter eiseniae EF01-2] Length = 176 Score = 45.1 bits (105), Expect = 0.003, Method: Compositional matrix adjust. Identities = 41/145 (28%), Positives = 67/145 (46%), Gaps = 21/145 (14%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 R AR A+QALYQ ++G + I E+ R A + D ++ ++HG Sbjct: 34 RSRAREFALQALYQ-HLVGGNDAADIDEFT--RGLAG--------FHKADAAHYQTLLHG 82 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRA----GVLELIECHSVPVEVIISEYV 131 + ID LI L R + + I RA GV E C VP V+++E + Sbjct: 83 CIGAAADIDALIVPLL------DRQLIAISPIERATMWIGVYEFQHCPDVPWRVVLNECI 136 Query: 132 CIAHDFFYGDEPKFINAVLDKVSRK 156 +A +F D K++NA+L+ ++ + Sbjct: 137 ELAKEFGGTDGHKYVNAMLNALAPR 161 >gi|319946361|ref|ZP_08020599.1| N utilization substance protein B [Streptococcus australis ATCC 700641] gi|319747514|gb|EFV99769.1| N utilization substance protein B [Streptococcus australis ATCC 700641] Length = 142 Score = 45.1 bits (105), Expect = 0.003, Method: Compositional matrix adjust. Identities = 41/149 (27%), Positives = 67/149 (44%), Gaps = 20/149 (13%) Query: 9 DLKLSHRRGIARLAAVQAL----YQIDII-GCSTTEIISEYETYRFCADTELDVESVYLH 63 D+ RR + R A QAL Y+ D++ C + ET D E+++ + L+ Sbjct: 3 DILFESRRDL-RERAFQALMSLEYEGDVVEACRFAFTHDKEET-----DQEVEIPAFLLN 56 Query: 64 VDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPV 123 ++ GV K +D I+ L W+ RL ++ +ILR GV E I P Sbjct: 57 --------LVSGVRQSKDELDKQIAQHLKTGWTVERLTLVEKNILRLGVFE-ITSFDTPQ 107 Query: 124 EVIISEYVCIAHDFFYGDEPKFINAVLDK 152 V ++E + +A F +F+N VL + Sbjct: 108 LVAVNEAIELAKTFSDEKSARFVNGVLSQ 136 >gi|259046624|ref|ZP_05737025.1| N utilization substance protein B [Granulicatella adiacens ATCC 49175] gi|259036789|gb|EEW38044.1| N utilization substance protein B [Granulicatella adiacens ATCC 49175] Length = 153 Score = 45.1 bits (105), Expect = 0.003, Method: Compositional matrix adjust. Identities = 43/153 (28%), Positives = 73/153 (47%), Gaps = 15/153 (9%) Query: 6 NKKDLKLSHRRGIARLAAVQALYQIDII-------GCSTTEIISEYETYRFCADTELDVE 58 ++K LK RR + R+ A+QALYQ+D+ S SE Y A TE D+ Sbjct: 2 SRKPLK---RRAL-RVLAIQALYQLDMTPEMHIVDALSLALECSEDSPYSSDAITEEDL- 56 Query: 59 SVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIEC 118 + ++ + ++ GV + + ID LI +++W +R+ + I+R + E+ Sbjct: 57 -INEVPEIAYSIALVRGVQNNLEKIDGLIEKH-SKRWKLNRIVRLDLIIMRVAIFEMTSP 114 Query: 119 H-SVPVEVIISEYVCIAHDFFYGDEPKFINAVL 150 VP V ++E + IA + KFIN +L Sbjct: 115 ELEVPQTVALNEAIEIAKTYSDEKSAKFINGIL 147 >gi|313891837|ref|ZP_07825442.1| transcription antitermination factor NusB [Dialister microaerophilus UPII 345-E] gi|313119831|gb|EFR43018.1| transcription antitermination factor NusB [Dialister microaerophilus UPII 345-E] Length = 133 Score = 45.1 bits (105), Expect = 0.003, Method: Compositional matrix adjust. Identities = 39/142 (27%), Positives = 72/142 (50%), Gaps = 17/142 (11%) Query: 15 RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74 +R +R A++ LY ++ TE I+ E Y+ +D+ ++ +I+ Sbjct: 2 KRRYSREYALEVLYANEL--NPQTEKINS-EIYKKLSDS-----------GKQFAESLIN 47 Query: 75 GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVE--VIISEYVC 132 V + + IDLLI + +KWS ++L+++ +ILR + E++ E VI +E + Sbjct: 48 SVRENNEEIDLLIKKHI-KKWSINQLNVVDKNILRIAIAEMLFLKDEKQEKNVIFNEAIE 106 Query: 133 IAHDFFYGDEPKFINAVLDKVS 154 IA + + KFIN +L+ VS Sbjct: 107 IAKIYGGKNSFKFINGILESVS 128 >gi|329121106|ref|ZP_08249737.1| transcription antitermination factor NusB [Dialister micraerophilus DSM 19965] gi|327471268|gb|EGF16722.1| transcription antitermination factor NusB [Dialister micraerophilus DSM 19965] Length = 136 Score = 45.1 bits (105), Expect = 0.003, Method: Compositional matrix adjust. Identities = 39/142 (27%), Positives = 72/142 (50%), Gaps = 17/142 (11%) Query: 15 RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74 +R +R A++ LY ++ TE I+ E Y+ +D+ ++ +I+ Sbjct: 5 KRRYSREYALEVLYANEL--NPQTEKINS-EIYKKLSDS-----------GKQFAESLIN 50 Query: 75 GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVE--VIISEYVC 132 V + + IDLLI + +KWS ++L+++ +ILR + E++ E VI +E + Sbjct: 51 SVRENNEEIDLLIKKHI-KKWSINQLNVVDKNILRIAIAEMLFLKDEKQEKNVIFNEAIE 109 Query: 133 IAHDFFYGDEPKFINAVLDKVS 154 IA + + KFIN +L+ VS Sbjct: 110 IAKIYGGKNSFKFINGILESVS 131 >gi|288803706|ref|ZP_06409135.1| NusB family protein [Prevotella melaninogenica D18] gi|288333795|gb|EFC72241.1| NusB family protein [Prevotella melaninogenica D18] Length = 297 Score = 45.1 bits (105), Expect = 0.003, Method: Compositional matrix adjust. Identities = 26/90 (28%), Positives = 47/90 (52%), Gaps = 5/90 (5%) Query: 66 LEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEV 125 L+ FR I D ++++ S + W FSRL + I++ + E++ ++PV V Sbjct: 151 LKLFRSTILNADDYQRYM-----SESSRNWDFSRLAYMDVVIMQIAIAEMLTFPNIPVTV 205 Query: 126 IISEYVCIAHDFFYGDEPKFINAVLDKVSR 155 I+EYV +A + +IN +LD ++R Sbjct: 206 TINEYVDLAKLYSTPRSGGYINGMLDTIAR 235 >gi|227515668|ref|ZP_03945717.1| transcription antitermination protein NusB [Lactobacillus fermentum ATCC 14931] gi|260663543|ref|ZP_05864433.1| transcription antitermination factor NusB [Lactobacillus fermentum 28-3-CHN] gi|227085971|gb|EEI21283.1| transcription antitermination protein NusB [Lactobacillus fermentum ATCC 14931] gi|260552084|gb|EEX25137.1| transcription antitermination factor NusB [Lactobacillus fermentum 28-3-CHN] Length = 139 Score = 45.1 bits (105), Expect = 0.003, Method: Compositional matrix adjust. Identities = 33/116 (28%), Positives = 49/116 (42%), Gaps = 8/116 (6%) Query: 47 YRFCADTELDVESVY-----LHVDLE---WFRVIIHGVMDRKQHIDLLISSCLTEKWSFS 98 + +D E+D E +Y L E + ++ GV + + D I L WS S Sbjct: 17 FAMASDPEVDREQLYKELLPLAPQEEVPAYLEELVTGVSEHQAEFDQEIEGSLAAGWSLS 76 Query: 99 RLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVS 154 R++ ILR + E+ VPV V I E + + F KFIN VL + Sbjct: 77 RVEKPNLIILRLALYEMKYVDDVPVAVAIDEALEMTKKFSDDKSRKFINGVLGHIG 132 >gi|304373104|ref|YP_003856313.1| Transcription termination factor [Mycoplasma hyorhinis HUB-1] gi|304309295|gb|ADM21775.1| Transcription termination factor [Mycoplasma hyorhinis HUB-1] gi|330723272|gb|AEC45642.1| Transcription termination factor [Mycoplasma hyorhinis MCLD] Length = 152 Score = 45.1 bits (105), Expect = 0.003, Method: Compositional matrix adjust. Identities = 48/173 (27%), Positives = 82/173 (47%), Gaps = 26/173 (15%) Query: 1 MTIQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESV 60 MT +NKK S RR I R+ + LY YE + D +++ + Sbjct: 1 MTQTENKK-YPFSKRR-IHRMEIISLLYS--------------YELF----DNKINTNEI 40 Query: 61 YLHVDLEWFRVIIHGVMDRKQHI-DLLISSCLTEKWSFSRLDMILCSILRAGVLELIECH 119 + + DL ++ I +++K I LI + L WS++R+ ++ +IL G EL+ Sbjct: 41 FKNYDLTKEQIKILEAIEKKYEIFQKLIINFLGSNWSWNRILPLVRAILLLGSFELLVND 100 Query: 120 SVPVEVIISEYVCIAHDFFY--GDEPKFINAVLDKVSRKEEIKRSGCVSAITQ 170 + +V+I+E V + D+ E KF+NAVLDK+++ E + TQ Sbjct: 101 N---KVVINEMVQMIKDYTLESDKEYKFVNAVLDKINQFYEQENLKVYKKTTQ 150 >gi|171059618|ref|YP_001791967.1| NusB antitermination factor [Leptothrix cholodnii SP-6] gi|170777063|gb|ACB35202.1| NusB antitermination factor [Leptothrix cholodnii SP-6] Length = 171 Score = 45.1 bits (105), Expect = 0.003, Method: Compositional matrix adjust. Identities = 27/90 (30%), Positives = 44/90 (48%), Gaps = 2/90 (2%) Query: 65 DLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVE 124 D F ++HG + + +D +++ L + L + +L G EL C VP + Sbjct: 68 DTAHFSALLHGCIAQVAALDAVLTPHLDRR--VQELSPVEHGVLLIGAYELQHCLDVPYK 125 Query: 125 VIISEYVCIAHDFFYGDEPKFINAVLDKVS 154 V I+E V +A F D K++N VLDK + Sbjct: 126 VAINEAVELAKSFGGTDGHKYVNGVLDKAA 155 >gi|241758553|ref|ZP_04756670.1| transcription antitermination factor NusB [Neisseria flavescens SK114] gi|241321296|gb|EER57456.1| transcription antitermination factor NusB [Neisseria flavescens SK114] Length = 142 Score = 45.1 bits (105), Expect = 0.003, Method: Compositional matrix adjust. Identities = 50/163 (30%), Positives = 70/163 (42%), Gaps = 30/163 (18%) Query: 10 LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF 69 +K RR AR AVQA+YQ I + EI EL S ++D E F Sbjct: 1 MKSPRRR--ARELAVQAIYQAGINKTAAPEIAKNIH--------ELSQTS---NMDEELF 47 Query: 70 RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSV------PV 123 + G + IS L R + L I RA VL L+ CH + P Sbjct: 48 NKLFFGTQTHAEEYMEKISPLL------DRDEKDLSPIERA-VL-LVACHELSTMPETPY 99 Query: 124 EVIISEYVCIAHDFFYGDEPKFINAVLDKVS---RKEEIKRSG 163 VII+E + + F D KF+N +LD+++ R +E +R G Sbjct: 100 PVIINEAIEVTKTFGGTDGHKFVNGILDQLASRIRPDEPRRKG 142 >gi|227542181|ref|ZP_03972230.1| transcription antitermination protein NusB [Corynebacterium glucuronolyticum ATCC 51866] gi|227182010|gb|EEI62982.1| transcription antitermination protein NusB [Corynebacterium glucuronolyticum ATCC 51866] Length = 342 Score = 45.1 bits (105), Expect = 0.003, Method: Compositional matrix adjust. Identities = 28/93 (30%), Positives = 45/93 (48%), Gaps = 2/93 (2%) Query: 68 WFRVIIHGVMDRKQHIDLLISSCLTE-KWSFSRLDMILCSILRAGVLELI-ECHSVPVEV 125 + R II GV ID I L + W+F RL + ++LR EL+ +VP + Sbjct: 58 YTREIIEGVAVNLDLIDFAIERELADTDWTFDRLPGVDRAVLRVATWELLFNASNVPQKT 117 Query: 126 IISEYVCIAHDFFYGDEPKFINAVLDKVSRKEE 158 +++ V + D P ++NAVLD + + E Sbjct: 118 AVTQAVELVSQLSTDDSPAYVNAVLDAMWKNPE 150 >gi|148655139|ref|YP_001275344.1| NusB antitermination factor [Roseiflexus sp. RS-1] gi|166215713|sp|A5URZ1|NUSB_ROSS1 RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|148567249|gb|ABQ89394.1| NusB antitermination factor [Roseiflexus sp. RS-1] Length = 142 Score = 45.1 bits (105), Expect = 0.003, Method: Compositional matrix adjust. Identities = 33/147 (22%), Positives = 65/147 (44%), Gaps = 16/147 (10%) Query: 20 RLAAVQALYQIDIIGCSTTEIISE-YETYRFCADTELDVESVYLHVDLEWFRVIIHGVMD 78 R A+Q L+++D S ++++ E R + E + R ++ G + Sbjct: 9 RAIALQILFELDATDHSPDQVVARRLEEERLPPEGE------------RFLRRLVFGAWE 56 Query: 79 RKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELI--ECHSVPVEVIISEYVCIAHD 136 ++D +I W S++ + +ILR + E + E P++ II+E V +A Sbjct: 57 HASYLDRIIEET-APNWPVSQMPGVDKAILRIALFEALIDEEEKTPLKAIINEAVELAKQ 115 Query: 137 FFYGDEPKFINAVLDKVSRKEEIKRSG 163 + + +F+N VL V + +R G Sbjct: 116 YGSDNSSRFVNGVLGTVVSRYRERRKG 142 >gi|296123835|ref|YP_003631613.1| transcription antitermination factor NusB [Planctomyces limnophilus DSM 3776] gi|296016175|gb|ADG69414.1| transcription antitermination factor NusB [Planctomyces limnophilus DSM 3776] Length = 163 Score = 45.1 bits (105), Expect = 0.004, Method: Compositional matrix adjust. Identities = 40/152 (26%), Positives = 66/152 (43%), Gaps = 19/152 (12%) Query: 15 RRGIARLAAVQALYQIDI---IGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71 RR AR +Q LY D+ +G +E R EL E++ W Sbjct: 5 RRHKAREVVLQMLYLKDLNPDVG---------FEQIRQMIQAELPDETLSRFA---WG-- 50 Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131 + G M+ + +D I WS SR+ ++LR G EL++ + P V+I E + Sbjct: 51 LFSGAMEFRPALDKKIEEAAV-NWSLSRMAPTDRNVLRLGAYELLQTDT-PHRVVIDEAL 108 Query: 132 CIAHDFFYGDEPKFINAVLDKVSRKEEIKRSG 163 +A F + F+N +LD++ E+ R+ Sbjct: 109 ELAKSFGGANSGSFVNGILDRLLPPEKRARAA 140 >gi|227488822|ref|ZP_03919138.1| transcription antitermination protein NusB [Corynebacterium glucuronolyticum ATCC 51867] gi|227091244|gb|EEI26556.1| transcription antitermination protein NusB [Corynebacterium glucuronolyticum ATCC 51867] Length = 342 Score = 45.1 bits (105), Expect = 0.004, Method: Compositional matrix adjust. Identities = 28/93 (30%), Positives = 45/93 (48%), Gaps = 2/93 (2%) Query: 68 WFRVIIHGVMDRKQHIDLLISSCLTE-KWSFSRLDMILCSILRAGVLELI-ECHSVPVEV 125 + R II GV ID I L + W+F RL + ++LR EL+ +VP + Sbjct: 58 YTREIIEGVAVNLDLIDFAIERELADTDWTFDRLPGVDRAVLRVATWELLFNASNVPQKT 117 Query: 126 IISEYVCIAHDFFYGDEPKFINAVLDKVSRKEE 158 +++ V + D P ++NAVLD + + E Sbjct: 118 AVTQAVELVSQLSTDDSPAYVNAVLDAMWKNPE 150 >gi|311086765|gb|ADP66846.1| transcription antitermination protein NusB [Buchnera aphidicola str. TLW03 (Acyrthosiphon pisum)] Length = 143 Score = 45.1 bits (105), Expect = 0.004, Method: Compositional matrix adjust. Identities = 46/144 (31%), Positives = 67/144 (46%), Gaps = 14/144 (9%) Query: 10 LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF 69 +K S RR AR A+Q LY +I + I E Y + +++ VY F Sbjct: 1 MKPSFRRK-ARACALQVLYSWEI----SHNNIKESAIYFLKEKNKKNIDIVY-------F 48 Query: 70 RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISE 129 +I G+ ++ID L+ L S L I +ILR EL + + +P +V I+E Sbjct: 49 YELIIGITYDCKNIDNLMKPYLFR--SLKELGHIERAILRISFYELHKRNDIPYKVSINE 106 Query: 130 YVCIAHDFFYGDEPKFINAVLDKV 153 + +A F D KFIN VLDK Sbjct: 107 GIELAKLFGSEDSHKFINGVLDKA 130 >gi|219681813|ref|YP_002468199.1| transcription antitermination protein NusB [Buchnera aphidicola str. 5A (Acyrthosiphon pisum)] gi|219682368|ref|YP_002468752.1| transcription antitermination protein NusB [Buchnera aphidicola str. Tuc7 (Acyrthosiphon pisum)] gi|257471515|ref|ZP_05635514.1| transcription antitermination protein NusB [Buchnera aphidicola str. LSR1 (Acyrthosiphon pisum)] gi|254772618|sp|B8D9P0|NUSB_BUCA5 RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|254772619|sp|B8D7Z2|NUSB_BUCAT RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|219622101|gb|ACL30257.1| transcription antitermination protein NusB [Buchnera aphidicola str. Tuc7 (Acyrthosiphon pisum)] gi|219624656|gb|ACL30811.1| transcription antitermination protein NusB [Buchnera aphidicola str. 5A (Acyrthosiphon pisum)] gi|311086189|gb|ADP66271.1| transcription antitermination protein NusB [Buchnera aphidicola str. LL01 (Acyrthosiphon pisum)] gi|311087353|gb|ADP67433.1| transcription antitermination protein NusB [Buchnera aphidicola str. JF99 (Acyrthosiphon pisum)] Length = 143 Score = 45.1 bits (105), Expect = 0.004, Method: Compositional matrix adjust. Identities = 46/144 (31%), Positives = 67/144 (46%), Gaps = 14/144 (9%) Query: 10 LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF 69 +K S RR AR A+Q LY +I + I E Y + +++ VY F Sbjct: 1 MKPSFRRK-ARACALQVLYSWEI----SHNNIKESAIYFLKEKNKKNIDIVY-------F 48 Query: 70 RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISE 129 +I G+ ++ID L+ L S L I +ILR EL + + +P +V I+E Sbjct: 49 YELIIGITYDCKNIDNLMKPYLFR--SLKELGHIERAILRISFYELHKRNDIPYKVSINE 106 Query: 130 YVCIAHDFFYGDEPKFINAVLDKV 153 + +A F D KFIN VLDK Sbjct: 107 GIELAKLFGSEDSHKFINGVLDKA 130 >gi|317502725|ref|ZP_07960836.1| NusB family protein [Prevotella salivae DSM 15606] gi|315666169|gb|EFV05725.1| NusB family protein [Prevotella salivae DSM 15606] Length = 317 Score = 45.1 bits (105), Expect = 0.004, Method: Compositional matrix adjust. Identities = 26/87 (29%), Positives = 43/87 (49%), Gaps = 5/87 (5%) Query: 69 FRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIIS 128 FR I D+ QH S + W F RL + I++ + E++ ++PV V I+ Sbjct: 215 FRATIINA-DQYQHY----MSEASRNWDFGRLAYMDIVIMQIAIAEMLTFPNIPVSVTIN 269 Query: 129 EYVCIAHDFFYGDEPKFINAVLDKVSR 155 EYV +A + +IN +LD ++R Sbjct: 270 EYVDLAKLYSTSKSAGYINGMLDSIAR 296 >gi|268611642|ref|ZP_06145369.1| sun protein [Ruminococcus flavefaciens FD-1] Length = 443 Score = 45.1 bits (105), Expect = 0.004, Method: Compositional matrix adjust. Identities = 27/92 (29%), Positives = 48/92 (52%), Gaps = 2/92 (2%) Query: 65 DLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVE 124 D + + +GV++RK +D +++ + S+LD I+ +ILR G+ +L+ +VP Sbjct: 39 DKRFCTALYYGVIERKITLDHILTGLSSR--PLSKLDSIIITILRCGIYQLLYMENVPDN 96 Query: 125 VIISEYVCIAHDFFYGDEPKFINAVLDKVSRK 156 ++E V +A F +NAVL RK Sbjct: 97 AAVNESVKLAKKFGKTSASGMVNAVLRNFIRK 128 >gi|317122010|ref|YP_004102013.1| NusB antitermination factor [Thermaerobacter marianensis DSM 12885] gi|315591990|gb|ADU51286.1| NusB antitermination factor [Thermaerobacter marianensis DSM 12885] Length = 237 Score = 45.1 bits (105), Expect = 0.004, Method: Compositional matrix adjust. Identities = 27/84 (32%), Positives = 43/84 (51%), Gaps = 3/84 (3%) Query: 74 HGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIEC--HSVPVEVIISEYV 131 GV R+ ID LI+ W RL + ++LR G+ EL+ VP V I+E V Sbjct: 60 RGVTRRRLDIDGLIAR-YARDWDLERLARVDRNVLRLGIYELLYAGRPDVPPPVAINEAV 118 Query: 132 CIAHDFFYGDEPKFINAVLDKVSR 155 +A + D +F+N +L +++R Sbjct: 119 ELAKRYSSEDAARFVNGILGQLAR 142 >gi|262066420|ref|ZP_06026032.1| transcription antitermination factor NusB [Fusobacterium periodonticum ATCC 33693] gi|291379847|gb|EFE87365.1| transcription antitermination factor NusB [Fusobacterium periodonticum ATCC 33693] Length = 152 Score = 45.1 bits (105), Expect = 0.004, Method: Compositional matrix adjust. Identities = 25/92 (27%), Positives = 52/92 (56%), Gaps = 6/92 (6%) Query: 66 LEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEV 125 LE+ R I+G+ + +I +I T+ W++SR+ ++ ++L E + + P+EV Sbjct: 63 LEFIRSSINGIAENYDNIKDIIKKN-TKNWAYSRIGLVERTLLIIATYEFL-FKNTPIEV 120 Query: 126 IISEYVCIAHDFFYGDEP--KFINAVLDKVSR 155 + +E V +A + YG+E +F+N +L + + Sbjct: 121 VANETVELAKE--YGNEKSYEFVNGILANIGK 150 >gi|227510480|ref|ZP_03940529.1| transcription antitermination protein NusB [Lactobacillus brevis subsp. gravesensis ATCC 27305] gi|227513489|ref|ZP_03943538.1| transcription antitermination protein NusB [Lactobacillus buchneri ATCC 11577] gi|227524631|ref|ZP_03954680.1| transcription antitermination protein NusB [Lactobacillus hilgardii ATCC 8290] gi|227083362|gb|EEI18674.1| transcription antitermination protein NusB [Lactobacillus buchneri ATCC 11577] gi|227088115|gb|EEI23427.1| transcription antitermination protein NusB [Lactobacillus hilgardii ATCC 8290] gi|227190132|gb|EEI70199.1| transcription antitermination protein NusB [Lactobacillus brevis subsp. gravesensis ATCC 27305] Length = 137 Score = 45.1 bits (105), Expect = 0.004, Method: Compositional matrix adjust. Identities = 23/76 (30%), Positives = 39/76 (51%) Query: 75 GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134 GV+D K+ +D LI L WS +R+ IL + E++ +P +V I+E + +A Sbjct: 53 GVVDHKEELDNLIEKYLKSGWSINRIAKTDLIILEIALYEMLHVDDLPAKVSINEAIELA 112 Query: 135 HDFFYGDEPKFINAVL 150 + KF+N +L Sbjct: 113 KKYSDDRSRKFVNGIL 128 >gi|325270436|ref|ZP_08137040.1| NusB family protein [Prevotella multiformis DSM 16608] gi|324987232|gb|EGC19211.1| NusB family protein [Prevotella multiformis DSM 16608] Length = 385 Score = 45.1 bits (105), Expect = 0.004, Method: Compositional matrix adjust. Identities = 25/87 (28%), Positives = 44/87 (50%), Gaps = 5/87 (5%) Query: 69 FRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIIS 128 FR I D + ++ S + W FSRL + I++ + E++ ++PV V I+ Sbjct: 215 FRATILNADDYQHYM-----SESSRNWDFSRLAYMDVVIMQIAIAEMLTFPNIPVSVTIN 269 Query: 129 EYVCIAHDFFYGDEPKFINAVLDKVSR 155 EYV +A + +IN +LD ++R Sbjct: 270 EYVDLAKLYSTPRSGGYINGMLDTIAR 296 >gi|322391457|ref|ZP_08064926.1| N utilization substance protein B [Streptococcus peroris ATCC 700780] gi|321145540|gb|EFX40932.1| N utilization substance protein B [Streptococcus peroris ATCC 700780] Length = 140 Score = 45.1 bits (105), Expect = 0.004, Method: Compositional matrix adjust. Identities = 24/81 (29%), Positives = 42/81 (51%), Gaps = 1/81 (1%) Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131 ++ GV +K+ +D I+ L W+ RL ++ ++LR GV E I P V ++E + Sbjct: 55 LVTGVQAQKEELDKQITQHLKAGWTIDRLTLVEKNLLRLGVFE-ITSFDTPQLVAVNEAI 113 Query: 132 CIAHDFFYGDEPKFINAVLDK 152 +A F +FIN +L + Sbjct: 114 ELAKSFSDQKSARFINGLLSQ 134 >gi|15617061|ref|NP_240274.1| transcription antitermination protein NusB [Buchnera aphidicola str. APS (Acyrthosiphon pisum)] gi|11134003|sp|P57535|NUSB_BUCAI RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|25299794|pir||H84983 N utilization substance protein B [imported] - Buchnera sp. (strain APS) gi|10039126|dbj|BAB13160.1| N utilization substance protein B [Buchnera aphidicola str. APS (Acyrthosiphon pisum)] Length = 143 Score = 45.1 bits (105), Expect = 0.004, Method: Compositional matrix adjust. Identities = 46/144 (31%), Positives = 67/144 (46%), Gaps = 14/144 (9%) Query: 10 LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF 69 +K S RR AR A+Q LY +I + I E Y + +++ VY F Sbjct: 1 MKPSFRRK-ARACALQVLYSWEI----SHNNIKESAIYFLKEKNKKNIDIVY-------F 48 Query: 70 RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISE 129 +I G+ ++ID L+ L S L I +ILR EL + + +P +V I+E Sbjct: 49 YELIIGITYDCKNIDNLMKPYLFR--SLKELGHIERAILRISFYELHKRNDIPYKVSINE 106 Query: 130 YVCIAHDFFYGDEPKFINAVLDKV 153 + +A F D KFIN VLDK Sbjct: 107 GIELAKLFGSEDSHKFINGVLDKA 130 >gi|239632001|ref|ZP_04675032.1| NusB antitermination factor [Lactobacillus paracasei subsp. paracasei 8700:2] gi|239526466|gb|EEQ65467.1| NusB antitermination factor [Lactobacillus paracasei subsp. paracasei 8700:2] Length = 139 Score = 44.7 bits (104), Expect = 0.004, Method: Compositional matrix adjust. Identities = 26/105 (24%), Positives = 51/105 (48%), Gaps = 6/105 (5%) Query: 52 DTELDVESVYLHV---DLE---WFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILC 105 + E D ++VY V D E + ++ V+ ++ +D ++ L + W+ +RL Sbjct: 25 NPEADKDAVYAEVLPQDTEVPAYLTTLVEAVLSKQADLDAALTPQLKKGWTLNRLTKPDL 84 Query: 106 SILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVL 150 ILR G+ E+ ++P I+E + +A + KF+N +L Sbjct: 85 IILRLGLYEIRYEEAMPEAAAINEAINLAKRYSDDQSAKFVNGIL 129 >gi|89901446|ref|YP_523917.1| NusB antitermination factor [Rhodoferax ferrireducens T118] gi|119390807|sp|Q21V17|NUSB_RHOFD RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|89346183|gb|ABD70386.1| NusB antitermination factor [Rhodoferax ferrireducens T118] Length = 177 Score = 44.7 bits (104), Expect = 0.004, Method: Compositional matrix adjust. Identities = 43/139 (30%), Positives = 69/139 (49%), Gaps = 13/139 (9%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 R AR A+QALYQ ++G +T I + T ++ D LH D ++ G Sbjct: 35 RSRAREFALQALYQ-SLVGKNTVSDIDAF-TRDLAGFSKAD----SLHFD-----TLLQG 83 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135 ++ +D L+ L K F+ + I SI+ G EL C VP V+++E V +A Sbjct: 84 CTEQAAALDALLLPLLDRK--FAEISPIEHSIMWIGAFELQHCLDVPWRVVLNECVELAK 141 Query: 136 DFFYGDEPKFINAVLDKVS 154 +F D K++NAVL+ ++ Sbjct: 142 EFGGTDGHKYVNAVLNSLA 160 >gi|313203078|ref|YP_004041735.1| nusb antitermination factor [Paludibacter propionicigenes WB4] gi|312442394|gb|ADQ78750.1| NusB antitermination factor [Paludibacter propionicigenes WB4] Length = 316 Score = 44.7 bits (104), Expect = 0.004, Method: Compositional matrix adjust. Identities = 24/89 (26%), Positives = 45/89 (50%), Gaps = 1/89 (1%) Query: 65 DLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVE 124 D E+ R ++ V+ + + +I T+ W R+ + I+ + EL++ ++PV Sbjct: 208 DAEFARKLMRSVLTKGPKLREMID-VNTKNWELDRIAFMDIVIMEVALAELMDFPTIPVN 266 Query: 125 VIISEYVCIAHDFFYGDEPKFINAVLDKV 153 V ++EY+ IA + FIN VLD + Sbjct: 267 VTLNEYIEIAKTYSTEKSGTFINGVLDNI 295 >gi|188586319|ref|YP_001917864.1| NusB antitermination factor [Natranaerobius thermophilus JW/NM-WN-LF] gi|229620365|sp|B2A534|NUSB_NATTJ RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|179351006|gb|ACB85276.1| NusB antitermination factor [Natranaerobius thermophilus JW/NM-WN-LF] Length = 139 Score = 44.7 bits (104), Expect = 0.004, Method: Compositional matrix adjust. Identities = 25/76 (32%), Positives = 38/76 (50%), Gaps = 1/76 (1%) Query: 81 QHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYG 140 Q ID I +E W RL + SILR + E++ +P V I+E V +A F Sbjct: 60 QKIDEYIEK-FSENWKIDRLSKVDLSILRLAISEILFFDDIPTRVSINEAVELAKKFSTD 118 Query: 141 DEPKFINAVLDKVSRK 156 +IN +LD+V+ + Sbjct: 119 KASGYINGILDQVANQ 134 >gi|296113998|ref|YP_003627936.1| transcription termination/antitermination protein NusB [Moraxella catarrhalis RH4] gi|295921692|gb|ADG62043.1| transcription termination/antitermination protein NusB [Moraxella catarrhalis RH4] gi|326565100|gb|EGE15293.1| transcription termination/antitermination protein NusB [Moraxella catarrhalis 46P47B1] gi|326567268|gb|EGE17388.1| transcription termination/antitermination protein NusB [Moraxella catarrhalis 12P80B1] gi|326568226|gb|EGE18308.1| transcription termination/antitermination protein NusB [Moraxella catarrhalis BC8] gi|326569926|gb|EGE19973.1| transcription termination/antitermination protein NusB [Moraxella catarrhalis BC1] gi|326573689|gb|EGE23647.1| transcription termination/antitermination protein NusB [Moraxella catarrhalis O35E] Length = 175 Score = 44.7 bits (104), Expect = 0.004, Method: Compositional matrix adjust. Identities = 38/142 (26%), Positives = 67/142 (47%), Gaps = 8/142 (5%) Query: 19 ARLAAVQALYQIDI----IGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74 AR AVQ LY+ + +++ E + A T D +H L ++ ++ Sbjct: 28 ARRFAVQGLYEWLMTDYRFAKQRRDLLGGNEPHTIAARTRADNAMHTVH--LGYYHELMR 85 Query: 75 GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134 + + ++ LI S L + S+LD+I +IL G EL +P +V++ E + + Sbjct: 86 NIPAQIDELESLIVSQLDRE--LSKLDIIEHAILLIGTYELKHSLHIPYKVVLDEAMKLN 143 Query: 135 HDFFYGDEPKFINAVLDKVSRK 156 F D K INAV+DK+++ Sbjct: 144 VHFGATDAHKLINAVMDKIAKN 165 >gi|326559289|gb|EGE09716.1| transcription termination/antitermination protein NusB [Moraxella catarrhalis 7169] gi|326564337|gb|EGE14567.1| transcription termination/antitermination protein NusB [Moraxella catarrhalis 103P14B1] gi|326570003|gb|EGE20049.1| transcription termination/antitermination protein NusB [Moraxella catarrhalis BC7] gi|326572862|gb|EGE22847.1| transcription termination/antitermination protein NusB [Moraxella catarrhalis CO72] gi|326574686|gb|EGE24622.1| transcription termination/antitermination protein NusB [Moraxella catarrhalis 101P30B1] Length = 175 Score = 44.7 bits (104), Expect = 0.004, Method: Compositional matrix adjust. Identities = 38/142 (26%), Positives = 67/142 (47%), Gaps = 8/142 (5%) Query: 19 ARLAAVQALYQIDI----IGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74 AR AVQ LY+ + +++ E + A T D +H L ++ ++ Sbjct: 28 ARRFAVQGLYEWLMTDYRFAKQRRDLLGGNEPHTIAARTRADNAMHTVH--LGYYHELMR 85 Query: 75 GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134 + + ++ LI S L + S+LD+I +IL G EL +P +V++ E + + Sbjct: 86 NIPAQIDELESLIVSQLDRE--LSKLDIIEHAILLIGTYELKHSLHIPYKVVLDEAMKLN 143 Query: 135 HDFFYGDEPKFINAVLDKVSRK 156 F D K INAV+DK+++ Sbjct: 144 VHFGATDAHKLINAVMDKIAKN 165 >gi|320547470|ref|ZP_08041756.1| transcription antitermination factor NusB [Streptococcus equinus ATCC 9812] gi|320447815|gb|EFW88572.1| transcription antitermination factor NusB [Streptococcus equinus ATCC 9812] Length = 142 Score = 44.7 bits (104), Expect = 0.004, Method: Compositional matrix adjust. Identities = 27/83 (32%), Positives = 42/83 (50%), Gaps = 4/83 (4%) Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131 ++ GV D + +D I + L WS RL + S+LR G+ E+ P V ++E + Sbjct: 58 LVKGVCDMQAELDQQIEAHLKAGWSLERLTLTDKSLLRLGLYEVRYFEETPGRVAVNEII 117 Query: 132 CIAHDFFYGDE--PKFINAVLDK 152 IA Y DE KF+N +L + Sbjct: 118 EIAKK--YSDETSAKFVNGLLSQ 138 >gi|114776397|ref|ZP_01451442.1| transcription antitermination protein NusB [Mariprofundus ferrooxydans PV-1] gi|114553227|gb|EAU55625.1| transcription antitermination protein NusB [Mariprofundus ferrooxydans PV-1] Length = 145 Score = 44.7 bits (104), Expect = 0.004, Method: Compositional matrix adjust. Identities = 26/93 (27%), Positives = 50/93 (53%), Gaps = 3/93 (3%) Query: 65 DLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVE 124 D + R ++G+ D +D LI + + + S + I +++R V E+ +P Sbjct: 45 DESYLREAVYGITDHTDALDELIKTAVRGR-SLRSVAQIEINVIRLAVWEMQNRLEIPYR 103 Query: 125 VIISEYVCIAHDFFYGDEPK-FINAVLDKVSRK 156 VII+E + + D+ G+ P+ FIN VLD ++++ Sbjct: 104 VIINEALELTRDYA-GEPPRGFINGVLDNLAKQ 135 >gi|322377045|ref|ZP_08051537.1| transcription antitermination factor NusB [Streptococcus sp. M334] gi|321281758|gb|EFX58766.1| transcription antitermination factor NusB [Streptococcus sp. M334] Length = 139 Score = 44.7 bits (104), Expect = 0.004, Method: Compositional matrix adjust. Identities = 24/86 (27%), Positives = 44/86 (51%), Gaps = 1/86 (1%) Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131 ++ GV +K +D I+ L W+ RL ++ ++LR G+ E I P V ++E + Sbjct: 55 LVSGVQAQKDELDKQINQHLKSGWTVERLTLVEKNLLRLGIFE-ITSFDTPQLVAVNEAI 113 Query: 132 CIAHDFFYGDEPKFINAVLDKVSRKE 157 +A +F +FIN +L + +E Sbjct: 114 ELAKNFSDQKSARFINGLLSQFVTEE 139 >gi|13357860|ref|NP_078134.1| transcription termination factor [Ureaplasma parvum serovar 3 str. ATCC 700970] gi|170761973|ref|YP_001752382.1| transcription antitermination factor NusB [Ureaplasma parvum serovar 3 str. ATCC 27815] gi|171920328|ref|ZP_02691332.2| transcription antitermination factor NusB [Ureaplasma parvum serovar 1 str. ATCC 27813] gi|183508752|ref|ZP_02690168.2| transcription antitermination factor NusB [Ureaplasma parvum serovar 14 str. ATCC 33697] gi|186701937|ref|ZP_02554155.2| transcription antitermination factor NusB [Ureaplasma parvum serovar 6 str. ATCC 27818] gi|11357059|pir||A82909 transcription termination factor UU300 [imported] - Ureaplasma urealyticum gi|6899275|gb|AAF30709.1|AE002127_7 transcription termination factor [Ureaplasma parvum serovar 3 str. ATCC 700970] gi|168827550|gb|ACA32812.1| transcription antitermination factor NusB [Ureaplasma parvum serovar 3 str. ATCC 27815] gi|171902748|gb|EDT49037.1| transcription antitermination factor NusB [Ureaplasma parvum serovar 1 str. ATCC 27813] gi|182675685|gb|EDT87590.1| transcription antitermination factor NusB [Ureaplasma parvum serovar 14 str. ATCC 33697] gi|186700685|gb|EDU18967.1| transcription antitermination factor NusB [Ureaplasma parvum serovar 6 str. ATCC 27818] Length = 127 Score = 44.7 bits (104), Expect = 0.004, Method: Compositional matrix adjust. Identities = 23/90 (25%), Positives = 50/90 (55%), Gaps = 2/90 (2%) Query: 64 VDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPV 123 +DL W V + ++D + + +I +++ W+F RL + ++L + E + + P Sbjct: 38 LDLNWINVGEY-ILDNYEQLTKMIKPLISKDWTFERLSYVEQALLLSAYGEYLVLKT-PK 95 Query: 124 EVIISEYVCIAHDFFYGDEPKFINAVLDKV 153 ++II + + H++ + KFINA+LD++ Sbjct: 96 KIIIDQTLITTHNYSNNESYKFINAILDQL 125 >gi|315655389|ref|ZP_07908289.1| transcription antitermination protein NusB [Mobiluncus curtisii ATCC 51333] gi|315490329|gb|EFU79954.1| transcription antitermination protein NusB [Mobiluncus curtisii ATCC 51333] Length = 191 Score = 44.7 bits (104), Expect = 0.004, Method: Compositional matrix adjust. Identities = 37/143 (25%), Positives = 63/143 (44%), Gaps = 14/143 (9%) Query: 15 RRGIARLAAVQALYQIDIIGCSTTEII---SEYETYRFCADTELDVESVYLHVDLEWFRV 71 RR R+ AV LY+ + G T E I S+ A T L +V Sbjct: 7 RRTRERVRAVDVLYEAHVRGWDTPEGIFSLSQLRQDETTAQTPLPAYAVE---------- 56 Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131 I+ GV + + ID +++ ++ W R+ + +I+R E++ V V I+ + Sbjct: 57 ILEGVAEHLERIDAALATY-SKAWPLHRMPEVDLAIMRVAAWEILFNPDVTGPVAITAAM 115 Query: 132 CIAHDFFYGDEPKFINAVLDKVS 154 IA + + PKFIN +L ++ Sbjct: 116 QIAEERSTDESPKFINGLLGAIN 138 >gi|325266364|ref|ZP_08133042.1| transcription antitermination factor NusB [Kingella denitrificans ATCC 33394] gi|324982157|gb|EGC17791.1| transcription antitermination factor NusB [Kingella denitrificans ATCC 33394] Length = 148 Score = 44.7 bits (104), Expect = 0.004, Method: Compositional matrix adjust. Identities = 44/167 (26%), Positives = 69/167 (41%), Gaps = 26/167 (15%) Query: 3 IQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYL 62 + + KK K RR AR AVQALYQ I E+ + + + Sbjct: 1 MSEPKKTKKSPRRR--AREFAVQALYQTAINKIPAEEVAKNTREH-----------TDFK 47 Query: 63 HVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRA----GVLELIEC 118 + D E F + G +++ I L R + ++ + RA V EL Sbjct: 48 NADDELFTAVFFGAHRQQREYMQQIRPHL------DRDENLISPVERAVLLLAVHELAAM 101 Query: 119 HSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVS---RKEEIKRS 162 P V+I+E + + F D KFIN++LDK++ R + KR+ Sbjct: 102 PETPYPVVINEAIELTKTFGGTDSHKFINSILDKLAAELRPNDPKRA 148 >gi|124514784|gb|EAY56296.1| transcription antitermination factor (NusB) [Leptospirillum rubarum] Length = 168 Score = 44.7 bits (104), Expect = 0.004, Method: Compositional matrix adjust. Identities = 26/87 (29%), Positives = 47/87 (54%), Gaps = 2/87 (2%) Query: 69 FRVIIHG-VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVII 127 FR + G + + ++ ID +IS + W+ R+ + +ILR G+ E++ VP V + Sbjct: 58 FRDRLGGAIREHREEIDTVISR-FSVDWTLDRMSRVDRNILRMGICEILFEPEVPFRVTV 116 Query: 128 SEYVCIAHDFFYGDEPKFINAVLDKVS 154 E + +AH F + +FIN +L +V Sbjct: 117 DESLELAHQFSEPEAVRFINGILHRVG 143 >gi|289168504|ref|YP_003446773.1| transcription termination factor nusB [Streptococcus mitis B6] gi|288908071|emb|CBJ22911.1| transcription termination factor nusB [Streptococcus mitis B6] Length = 139 Score = 44.7 bits (104), Expect = 0.004, Method: Compositional matrix adjust. Identities = 24/86 (27%), Positives = 44/86 (51%), Gaps = 1/86 (1%) Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131 ++ GV +K +D I+ L W+ RL ++ ++LR G+ E I P V ++E + Sbjct: 55 LVSGVQTQKDELDKQINQHLKPGWTVERLTLVEKNLLRLGIFE-ITSFDTPQLVAVNEAI 113 Query: 132 CIAHDFFYGDEPKFINAVLDKVSRKE 157 +A +F +FIN +L + +E Sbjct: 114 ELAKNFSDQKSARFINGLLSQFVTEE 139 >gi|301066686|ref|YP_003788709.1| transcription termination factor [Lactobacillus casei str. Zhang] gi|300439093|gb|ADK18859.1| Transcription termination factor [Lactobacillus casei str. Zhang] Length = 135 Score = 44.7 bits (104), Expect = 0.004, Method: Compositional matrix adjust. Identities = 26/105 (24%), Positives = 51/105 (48%), Gaps = 6/105 (5%) Query: 52 DTELDVESVYLHV---DLE---WFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILC 105 + E D ++VY V D E + ++ V+ ++ +D ++ L + W+ +RL Sbjct: 21 NPEADKDAVYAEVLPQDTEVPAYLTTLVEAVLSKQADLDAALTPQLKKGWTLNRLTKPDL 80 Query: 106 SILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVL 150 ILR G+ E+ ++P I+E + +A + KF+N +L Sbjct: 81 IILRLGLYEIRYEEAMPEAAAINEAINLAKRYSDDQSAKFVNGIL 125 >gi|307708254|ref|ZP_07644721.1| transcription antitermination factor NusB [Streptococcus mitis NCTC 12261] gi|307615700|gb|EFN94906.1| transcription antitermination factor NusB [Streptococcus mitis NCTC 12261] Length = 141 Score = 44.7 bits (104), Expect = 0.004, Method: Compositional matrix adjust. Identities = 24/86 (27%), Positives = 44/86 (51%), Gaps = 1/86 (1%) Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131 ++ GV +K +D I+ L W+ RL ++ ++LR G+ E I P V ++E + Sbjct: 55 LVSGVQAQKDELDKQINQHLKSGWTVERLTLVEKNLLRLGIFE-ITSFDTPQLVAVNEAI 113 Query: 132 CIAHDFFYGDEPKFINAVLDKVSRKE 157 +A +F +FIN +L + +E Sbjct: 114 ELAKNFSDQKSARFINGLLSQFVTEE 139 >gi|304389451|ref|ZP_07371414.1| transcription antitermination factor NusB [Mobiluncus curtisii subsp. curtisii ATCC 35241] gi|304327261|gb|EFL94496.1| transcription antitermination factor NusB [Mobiluncus curtisii subsp. curtisii ATCC 35241] Length = 191 Score = 44.7 bits (104), Expect = 0.004, Method: Compositional matrix adjust. Identities = 37/142 (26%), Positives = 62/142 (43%), Gaps = 14/142 (9%) Query: 15 RRGIARLAAVQALYQIDIIGCSTTEII---SEYETYRFCADTELDVESVYLHVDLEWFRV 71 RR R+ AV LY+ + G T E I S+ A T L +V Sbjct: 7 RRTRERIRAVDVLYEAHVRGWDTPEGIFSLSQLRQDETTAQTPLPAYAVE---------- 56 Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131 I+ GV + + ID +++ ++ W R+ + +I+R E++ V V I+ + Sbjct: 57 ILEGVAEHLERIDAALATY-SKAWPLHRMPEVDLAIMRVAAWEILFNPDVTGPVAITAAM 115 Query: 132 CIAHDFFYGDEPKFINAVLDKV 153 IA + + PKFIN +L + Sbjct: 116 QIAEERSTDESPKFINGLLGAI 137 >gi|238063911|ref|ZP_04608620.1| transcription antitermination factor nusB [Micromonospora sp. ATCC 39149] gi|237885722|gb|EEP74550.1| transcription antitermination factor nusB [Micromonospora sp. ATCC 39149] Length = 136 Score = 44.7 bits (104), Expect = 0.005, Method: Compositional matrix adjust. Identities = 26/83 (31%), Positives = 42/83 (50%), Gaps = 1/83 (1%) Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131 ++ GV ID LI+S E W+ R+ + ++ R V EL+ + V ISE V Sbjct: 50 LVEGVAAHLGRIDELIASY-AEGWTLDRMPAVDRNLARIAVYELLYVDELDDAVAISEAV 108 Query: 132 CIAHDFFYGDEPKFINAVLDKVS 154 +A D P+F+N VL +++ Sbjct: 109 ELARQMSTDDSPRFLNGVLGRIA 131 >gi|171779279|ref|ZP_02920250.1| hypothetical protein STRINF_01127 [Streptococcus infantarius subsp. infantarius ATCC BAA-102] gi|171282335|gb|EDT47762.1| hypothetical protein STRINF_01127 [Streptococcus infantarius subsp. infantarius ATCC BAA-102] Length = 142 Score = 44.7 bits (104), Expect = 0.005, Method: Compositional matrix adjust. Identities = 41/145 (28%), Positives = 66/145 (45%), Gaps = 13/145 (8%) Query: 11 KLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYE-TYRFCADTELDVESVYLHVDLEWF 69 ++ R R A QAL+ ++ G E + E Y + E D E V + V + Sbjct: 4 NFTNSRRDLRERAFQALFSLEFGG----EYLQAAEFAYTYDKTVEED-EEVQVPV---FL 55 Query: 70 RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISE 129 ++ GV D + +D I + L WS RL + ++LR G+ E+ P V ++E Sbjct: 56 LNLVKGVCDLQSELDQQIEAHLKSGWSLERLTLTDKALLRLGLYEVKYFEETPGRVAVNE 115 Query: 130 YVCIAHDFFYGDE--PKFINAVLDK 152 + IA Y DE KF+N +L + Sbjct: 116 IIEIAKK--YSDETSAKFVNGLLSQ 138 >gi|307706079|ref|ZP_07642898.1| transcription antitermination factor NusB [Streptococcus mitis SK321] gi|307618479|gb|EFN97627.1| transcription antitermination factor NusB [Streptococcus mitis SK321] Length = 139 Score = 44.7 bits (104), Expect = 0.005, Method: Compositional matrix adjust. Identities = 24/86 (27%), Positives = 44/86 (51%), Gaps = 1/86 (1%) Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131 ++ GV +K +D I+ L W+ RL ++ ++LR G+ E I P V ++E + Sbjct: 55 LVSGVQAQKDELDKQINQHLKSGWTVERLTLVEKNLLRLGIFE-ITSFDTPQLVAVNEAI 113 Query: 132 CIAHDFFYGDEPKFINAVLDKVSRKE 157 +A +F +FIN +L + +E Sbjct: 114 ELAKNFSDQKSARFINGLLSQFVTEE 139 >gi|294673022|ref|YP_003573638.1| transcription antitermination factor NusB [Prevotella ruminicola 23] gi|294473573|gb|ADE82962.1| transcription antitermination factor NusB [Prevotella ruminicola 23] Length = 282 Score = 44.7 bits (104), Expect = 0.005, Method: Compositional matrix adjust. Identities = 24/87 (27%), Positives = 45/87 (51%), Gaps = 5/87 (5%) Query: 69 FRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIIS 128 FR I + ++++ S + W FSRL + +++ + E++ +VP+ V I+ Sbjct: 169 FRAAIMNADEYQRYM-----SEASRNWDFSRLAYMDIILMQIAIAEMMTLPNVPISVTIN 223 Query: 129 EYVCIAHDFFYGDEPKFINAVLDKVSR 155 EYV IA + +IN +LD ++R Sbjct: 224 EYVEIAKFYSTPKSAGYINGMLDGIAR 250 >gi|269795116|ref|YP_003314571.1| tRNA/rRNA cytosine-C5-methylase [Sanguibacter keddieii DSM 10542] gi|269097301|gb|ACZ21737.1| tRNA/rRNA cytosine-C5-methylase [Sanguibacter keddieii DSM 10542] Length = 505 Score = 44.7 bits (104), Expect = 0.005, Method: Compositional matrix adjust. Identities = 25/86 (29%), Positives = 42/86 (48%), Gaps = 3/86 (3%) Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131 + +G + + D +I C+ ++D + +LR G +L+ VP +SE V Sbjct: 91 LAYGTLRLRGRYDAIIGECVDRP--LDKIDAPVLDVLRLGAHQLLGMR-VPSHAAVSETV 147 Query: 132 CIAHDFFYGDEPKFINAVLDKVSRKE 157 +A D +F+NAVL K+SR E Sbjct: 148 GLARDRVGAGSAQFVNAVLRKISRTE 173 >gi|315656698|ref|ZP_07909585.1| transcription antitermination factor NusB [Mobiluncus curtisii subsp. holmesii ATCC 35242] gi|315492653|gb|EFU82257.1| transcription antitermination factor NusB [Mobiluncus curtisii subsp. holmesii ATCC 35242] Length = 191 Score = 44.7 bits (104), Expect = 0.005, Method: Compositional matrix adjust. Identities = 37/142 (26%), Positives = 62/142 (43%), Gaps = 14/142 (9%) Query: 15 RRGIARLAAVQALYQIDIIGCSTTEII---SEYETYRFCADTELDVESVYLHVDLEWFRV 71 RR R+ AV LY+ + G T E I S+ A T L +V Sbjct: 7 RRTRERVRAVDVLYEAHVRGWDTPEGIFSLSQLRQDETTAQTPLPAYAVE---------- 56 Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131 I+ GV + + ID +++ ++ W R+ + +I+R E++ V V I+ + Sbjct: 57 ILEGVAEHLERIDAALATY-SKAWPLHRMPEVDLAIMRVAAWEILFNPDVTGPVAITAAM 115 Query: 132 CIAHDFFYGDEPKFINAVLDKV 153 IA + + PKFIN +L + Sbjct: 116 QIAEERSTDESPKFINGLLGAI 137 >gi|291296745|ref|YP_003508143.1| NusB antitermination factor [Meiothermus ruber DSM 1279] gi|290471704|gb|ADD29123.1| NusB antitermination factor [Meiothermus ruber DSM 1279] Length = 152 Score = 44.7 bits (104), Expect = 0.005, Method: Compositional matrix adjust. Identities = 33/120 (27%), Positives = 61/120 (50%), Gaps = 8/120 (6%) Query: 51 ADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRA 110 AD E DV H L + + ++ G ++Q +D ++S + E WSFS++ ++LR Sbjct: 39 ADQEADVLD---HEGLLFAQRLVQGYAAQQQTVDEALASTI-EGWSFSQMAKTDLAVLRL 94 Query: 111 GVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRSGCVSAITQ 170 E++ P +I V IA + D +F+N VL ++ ++ E +G +SA+ + Sbjct: 95 ATYEML-FEPTPYAPLIEVAVKIAKRYGGEDSGRFVNGVLARLLKRIE---AGELSAVAK 150 >gi|237750245|ref|ZP_04580725.1| predicted protein [Helicobacter bilis ATCC 43879] gi|229374139|gb|EEO24530.1| predicted protein [Helicobacter bilis ATCC 43879] Length = 368 Score = 44.7 bits (104), Expect = 0.005, Method: Compositional matrix adjust. Identities = 25/84 (29%), Positives = 50/84 (59%), Gaps = 2/84 (2%) Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131 ++HG+ + ++ I +I+ L + W SRL +I +I++ GV EL++ ++ VII+E + Sbjct: 49 LLHGICNEERKIADIINVFL-KSWDLSRLGVIEKNIIKLGVYELLQTNTQKA-VIINEAI 106 Query: 132 CIAHDFFYGDEPKFINAVLDKVSR 155 + F D + +N +LD V++ Sbjct: 107 ELTKSFNVQDAFRLVNGILDSVAK 130 >gi|167628417|ref|YP_001678916.1| transcription antitermination factor nusb [Heliobacterium modesticaldum Ice1] gi|238687883|sp|B0TEI6|NUSB_HELMI RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|167591157|gb|ABZ82905.1| transcription antitermination factor nusb [Heliobacterium modesticaldum Ice1] Length = 206 Score = 44.7 bits (104), Expect = 0.005, Method: Compositional matrix adjust. Identities = 31/145 (21%), Positives = 67/145 (46%), Gaps = 14/145 (9%) Query: 12 LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71 +S R+G R A+Q L+ D+ G +Y + F + R Sbjct: 1 MSRRQG--RETALQTLFMADV-GRMEPAYALQYASEEFG----------ISEAAAAFARE 47 Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131 ++ G + ++ ID I L ++W+ R+ + ++LR + E++ +P+ I+E + Sbjct: 48 LVEGAVANRETIDGNIRR-LAKEWNLERMPHVDRNLLRVAIFEMLFREDIPLNAAINEAI 106 Query: 132 CIAHDFFYGDEPKFINAVLDKVSRK 156 +A + + KF+N +L +++R+ Sbjct: 107 ELAKIYANEESAKFVNGILGQLARE 131 >gi|260062175|ref|YP_003195255.1| NusB family protein [Robiginitalea biformata HTCC2501] gi|88783737|gb|EAR14908.1| NusB family protein [Robiginitalea biformata HTCC2501] Length = 366 Score = 44.7 bits (104), Expect = 0.005, Method: Compositional matrix adjust. Identities = 26/92 (28%), Positives = 48/92 (52%), Gaps = 1/92 (1%) Query: 65 DLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVE 124 D+E+ ++ +++ ++ I T W R+ I +L+ G+ EL+ S+P Sbjct: 261 DMEFAMDLLRKTLNKNAALEAEIEGK-TPNWDKERIAEIDGILLKMGIAELLYFPSIPER 319 Query: 125 VIISEYVCIAHDFFYGDEPKFINAVLDKVSRK 156 V I+EY+ IA ++ FIN +LDK+ R+ Sbjct: 320 VTINEYLEIAKEYSTPKSSIFINGILDKLIRE 351 >gi|88802775|ref|ZP_01118302.1| putative N utilization substance protein [Polaribacter irgensii 23-P] gi|88781633|gb|EAR12811.1| putative N utilization substance protein [Polaribacter irgensii 23-P] Length = 312 Score = 44.3 bits (103), Expect = 0.005, Method: Compositional matrix adjust. Identities = 20/65 (30%), Positives = 36/65 (55%) Query: 92 TEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLD 151 T W R+ I +++ + E + S+P +V I+EY+ I+ D+ FIN VLD Sbjct: 233 TPNWESDRIAGIDMILIKMAIAEFLNFSSIPTKVTINEYIEISKDYSTSRSSFFINGVLD 292 Query: 152 KVSRK 156 K++++ Sbjct: 293 KIAKE 297 >gi|282879732|ref|ZP_06288462.1| transcription antitermination factor NusB [Prevotella timonensis CRIS 5C-B1] gi|281306401|gb|EFA98431.1| transcription antitermination factor NusB [Prevotella timonensis CRIS 5C-B1] Length = 334 Score = 44.3 bits (103), Expect = 0.005, Method: Compositional matrix adjust. Identities = 20/67 (29%), Positives = 37/67 (55%) Query: 89 SCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINA 148 S + W FSRL + I++ + E++ ++P+ V I+EYV +A + +IN Sbjct: 230 SETSHNWDFSRLAYMDVVIMQIAIAEMLTFPNIPISVTINEYVNLAKLYSTPKSGGYING 289 Query: 149 VLDKVSR 155 +LD ++R Sbjct: 290 MLDAIAR 296 >gi|167860643|gb|ACA05102.1| putative N utilization substance protein [Flammeovirga yaeyamensis] Length = 200 Score = 44.3 bits (103), Expect = 0.005, Method: Compositional matrix adjust. Identities = 25/103 (24%), Positives = 57/103 (55%), Gaps = 5/103 (4%) Query: 65 DLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVE 124 D E+F + +++++ +I+ ++KW+ R+ + ++ + E++ ++PV+ Sbjct: 92 DKEFFEDLYKYTLEQEESFKEIIAKK-SKKWAIDRIAKVDSILINMALAEMLNFRNIPVK 150 Query: 125 VIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEE----IKRSG 163 V I+E++ I+ + +FIN +LD +S + E IK+SG Sbjct: 151 VTINEFIEISKQYSTPKSWQFINGMLDSISEELEAEGKIKKSG 193 >gi|167753516|ref|ZP_02425643.1| hypothetical protein ALIPUT_01791 [Alistipes putredinis DSM 17216] gi|167658141|gb|EDS02271.1| hypothetical protein ALIPUT_01791 [Alistipes putredinis DSM 17216] Length = 312 Score = 44.3 bits (103), Expect = 0.005, Method: Compositional matrix adjust. Identities = 23/77 (29%), Positives = 40/77 (51%), Gaps = 4/77 (5%) Query: 91 LTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVL 150 T W R+ + I+ + EL+ S+PV+V + EY+ IA + FIN VL Sbjct: 232 FTRNWDVERIVFMDNLIMATAITELVSFPSIPVKVTLDEYIDIAKFYSTPGSSTFINGVL 291 Query: 151 DKV----SRKEEIKRSG 163 DK+ + + ++K++G Sbjct: 292 DKIVEALTEEGKLKKTG 308 >gi|120436864|ref|YP_862550.1| antitermination protein NusB [Gramella forsetii KT0803] gi|117579014|emb|CAL67483.1| antitermination protein NusB [Gramella forsetii KT0803] Length = 337 Score = 44.3 bits (103), Expect = 0.005, Method: Compositional matrix adjust. Identities = 21/64 (32%), Positives = 37/64 (57%) Query: 92 TEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLD 151 T W R+ + +++ + E ++ S+PV+V I+EY+ IA ++ FIN VLD Sbjct: 258 TPNWDKDRIAEVDMVLIKMAICEFLKFTSIPVKVTINEYLEIAKEYSTPKSSIFINGVLD 317 Query: 152 KVSR 155 K+S+ Sbjct: 318 KLSK 321 >gi|294670752|ref|ZP_06735614.1| hypothetical protein NEIELOOT_02461 [Neisseria elongata subsp. glycolytica ATCC 29315] gi|291307540|gb|EFE48783.1| hypothetical protein NEIELOOT_02461 [Neisseria elongata subsp. glycolytica ATCC 29315] Length = 143 Score = 44.3 bits (103), Expect = 0.005, Method: Compositional matrix adjust. Identities = 49/162 (30%), Positives = 68/162 (41%), Gaps = 29/162 (17%) Query: 10 LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF 69 +K S RR AR VQALYQ + S EI + R AD + D + F Sbjct: 1 MKTSPRRR-AREFTVQALYQAALNHASAPEIA---KNIREAAD--------FKRADADLF 48 Query: 70 RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSV------PV 123 + G +I L R + + I R G+L L+ CH + P Sbjct: 49 TALFFGAHGNSAEYMQIIRPLL------DRDEKDINPIER-GIL-LMACHELSAMPETPY 100 Query: 124 EVIISEYVCIAHDFFYGDEPKFINAVLDKVS---RKEEIKRS 162 VII+E + + F D KFIN +LDK+S R + KR+ Sbjct: 101 PVIINEAIEVTKTFGGTDSHKFINGILDKLSVQLRPNDPKRA 142 >gi|153814701|ref|ZP_01967369.1| hypothetical protein RUMTOR_00916 [Ruminococcus torques ATCC 27756] gi|317500231|ref|ZP_07958461.1| transcription antitermination factor NusB [Lachnospiraceae bacterium 8_1_57FAA] gi|331087539|ref|ZP_08336471.1| transcription antitermination factor NusB [Lachnospiraceae bacterium 3_1_46FAA] gi|145847732|gb|EDK24650.1| hypothetical protein RUMTOR_00916 [Ruminococcus torques ATCC 27756] gi|316898357|gb|EFV20398.1| transcription antitermination factor NusB [Lachnospiraceae bacterium 8_1_57FAA] gi|330401757|gb|EGG81335.1| transcription antitermination factor NusB [Lachnospiraceae bacterium 3_1_46FAA] Length = 135 Score = 44.3 bits (103), Expect = 0.005, Method: Compositional matrix adjust. Identities = 25/77 (32%), Positives = 42/77 (54%), Gaps = 1/77 (1%) Query: 81 QHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYG 140 + ID L++ T W +R++ + SILR + E+ VP +V I+E V +A F Sbjct: 59 EEIDGLLNENAT-GWKTTRMNKVDLSILRLALYEIKWDEDVPAKVAINEAVELAKRFGGD 117 Query: 141 DEPKFINAVLDKVSRKE 157 + F+N VL K +++E Sbjct: 118 NSSSFVNGVLAKFAKQE 134 >gi|315604170|ref|ZP_07879236.1| conserved hypothetical protein [Actinomyces sp. oral taxon 180 str. F0310] gi|315313876|gb|EFU61927.1| conserved hypothetical protein [Actinomyces sp. oral taxon 180 str. F0310] Length = 208 Score = 44.3 bits (103), Expect = 0.006, Method: Compositional matrix adjust. Identities = 27/84 (32%), Positives = 41/84 (48%), Gaps = 1/84 (1%) Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131 II GV D + ID LIS+ R+ + +++R V E++E V ++I E V Sbjct: 60 IIGGVADNLRRIDSLISAH-ARVPGLDRIAAVDLAVMRVAVWEMLENDEVSPIIVIDEAV 118 Query: 132 CIAHDFFYGDEPKFINAVLDKVSR 155 I P F+NAVLD + + Sbjct: 119 SIVRSISTDTSPAFVNAVLDAIRK 142 >gi|296875879|ref|ZP_06899940.1| transcription antitermination factor NusB [Streptococcus parasanguinis ATCC 15912] gi|296433120|gb|EFH18906.1| transcription antitermination factor NusB [Streptococcus parasanguinis ATCC 15912] Length = 143 Score = 44.3 bits (103), Expect = 0.006, Method: Compositional matrix adjust. Identities = 30/96 (31%), Positives = 48/96 (50%), Gaps = 2/96 (2%) Query: 63 HVDLEWFRV-IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSV 121 VDL F + ++ GV K +D I L W+ RL ++ +ILR G+ E+ E + Sbjct: 49 EVDLPAFLMNLVTGVYQSKDQLDQQIGQHLKAGWTVERLTLVEKNILRLGIYEITEFDT- 107 Query: 122 PVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKE 157 P V ++E V +A F +F+N VL + +E Sbjct: 108 PQIVAVNEAVELAKAFSDEISSRFVNGVLSQFVTEE 143 >gi|184155740|ref|YP_001844080.1| transcription antitermination protein NusB [Lactobacillus fermentum IFO 3956] gi|238692985|sp|B2GD68|NUSB_LACF3 RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|183227084|dbj|BAG27600.1| transcription termination factor [Lactobacillus fermentum IFO 3956] Length = 139 Score = 44.3 bits (103), Expect = 0.006, Method: Compositional matrix adjust. Identities = 33/116 (28%), Positives = 49/116 (42%), Gaps = 8/116 (6%) Query: 47 YRFCADTELDVESVY-----LHVDLE---WFRVIIHGVMDRKQHIDLLISSCLTEKWSFS 98 + +D E+D E +Y L E + ++ GV + + D I L WS S Sbjct: 17 FAMVSDPEVDREQLYKELLPLAPQEEVPAYLEELVTGVSEHQAEFDQEIEGSLAAGWSLS 76 Query: 99 RLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVS 154 R++ ILR + E+ VPV V I E + + F KFIN VL + Sbjct: 77 RVEKPNLIILRLALYEMKYVDDVPVAVAIDEALEMTKKFSDDKSRKFINGVLGHIG 132 >gi|327313923|ref|YP_004329360.1| transcription antitermination factor NusB [Prevotella denticola F0289] gi|326944316|gb|AEA20201.1| transcription antitermination factor NusB [Prevotella denticola F0289] Length = 359 Score = 44.3 bits (103), Expect = 0.006, Method: Compositional matrix adjust. Identities = 25/87 (28%), Positives = 44/87 (50%), Gaps = 5/87 (5%) Query: 69 FRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIIS 128 FR I D + ++ S + W FSRL + I++ + E++ ++PV V I+ Sbjct: 215 FRATILNADDYQHYM-----SESSRNWDFSRLAYMDVIIMQIAIAEMLTFPNIPVTVTIN 269 Query: 129 EYVCIAHDFFYGDEPKFINAVLDKVSR 155 EYV +A + +IN +LD ++R Sbjct: 270 EYVDLAKLYSTPRSGGYINGMLDTIAR 296 >gi|325858411|ref|ZP_08172573.1| transcription antitermination factor NusB [Prevotella denticola CRIS 18C-A] gi|325483049|gb|EGC86037.1| transcription antitermination factor NusB [Prevotella denticola CRIS 18C-A] Length = 359 Score = 44.3 bits (103), Expect = 0.006, Method: Compositional matrix adjust. Identities = 25/87 (28%), Positives = 44/87 (50%), Gaps = 5/87 (5%) Query: 69 FRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIIS 128 FR I D + ++ S + W FSRL + I++ + E++ ++PV V I+ Sbjct: 215 FRATILNADDYQHYM-----SESSRNWDFSRLAYMDVIIMQIAIAEMLTFPNIPVTVTIN 269 Query: 129 EYVCIAHDFFYGDEPKFINAVLDKVSR 155 EYV +A + +IN +LD ++R Sbjct: 270 EYVDLAKLYSTPRSGGYINGMLDTIAR 296 >gi|266620364|ref|ZP_06113299.1| transcription antitermination factor NusB [Clostridium hathewayi DSM 13479] gi|288868036|gb|EFD00335.1| transcription antitermination factor NusB [Clostridium hathewayi DSM 13479] Length = 147 Score = 44.3 bits (103), Expect = 0.006, Method: Compositional matrix adjust. Identities = 26/86 (30%), Positives = 42/86 (48%), Gaps = 1/86 (1%) Query: 68 WFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVII 127 + + VM + +D I + + E W R+ +ILR + E++ VP +V I Sbjct: 62 YLKTKTEAVMRKIPELDEKIDA-VAEGWKTKRMGKAELTILRLALYEILYDEEVPEKVAI 120 Query: 128 SEYVCIAHDFFYGDEPKFINAVLDKV 153 +E V +A F + P FIN VL K+ Sbjct: 121 NEAVELAKRFGGNEAPAFINGVLAKL 146 >gi|220909702|ref|YP_002485013.1| transcription antitermination protein NusB [Cyanothece sp. PCC 7425] gi|254772629|sp|B8HYJ8|NUSB_CYAP4 RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|219866313|gb|ACL46652.1| NusB antitermination factor [Cyanothece sp. PCC 7425] Length = 209 Score = 44.3 bits (103), Expect = 0.006, Method: Compositional matrix adjust. Identities = 29/93 (31%), Positives = 48/93 (51%), Gaps = 2/93 (2%) Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131 I+ V+ + ID L+ + L + W F+RL I +ILR V E++ + P +V I+E V Sbjct: 119 ILKQVLTHRTAIDHLLETALVD-WQFNRLAQIDRNILRIAVAEILYLKT-PTQVTINEAV 176 Query: 132 CIAHDFFYGDEPKFINAVLDKVSRKEEIKRSGC 164 +A + D +F+N VL + E + G Sbjct: 177 ELAKRYSDEDGYRFVNGVLRRTIPHLEAQAQGT 209 >gi|315634386|ref|ZP_07889673.1| transcription termination/antitermination factor NusB [Aggregatibacter segnis ATCC 33393] gi|315476976|gb|EFU67721.1| transcription termination/antitermination factor NusB [Aggregatibacter segnis ATCC 33393] Length = 102 Score = 44.3 bits (103), Expect = 0.006, Method: Compositional matrix adjust. Identities = 31/102 (30%), Positives = 51/102 (50%), Gaps = 6/102 (5%) Query: 53 TELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGV 112 TE D++ V D +FR + ++ + ++ + L LD I +ILR V Sbjct: 2 TEQDMKGV----DTPYFRKLFRQTVENVEAVERTMQGYLDR--GLEELDPIEKAILRLAV 55 Query: 113 LELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVS 154 EL VP +V+I+E + +A F + K+IN VLDK++ Sbjct: 56 YELQFEADVPYKVVINEAIEVAKVFGADESHKYINGVLDKIA 97 >gi|255323400|ref|ZP_05364531.1| transcription antitermination factor NusB [Campylobacter showae RM3277] gi|255299437|gb|EET78723.1| transcription antitermination factor NusB [Campylobacter showae RM3277] Length = 131 Score = 44.3 bits (103), Expect = 0.006, Method: Compositional matrix adjust. Identities = 24/80 (30%), Positives = 43/80 (53%), Gaps = 2/80 (2%) Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131 + HG+++ + +D L+++ L E W + + I ++LR G E+ + VII+E + Sbjct: 48 LFHGILEHEDELDALLNARLKE-WKINEIGSIERAVLRLGAYEM-KFTPTDKAVIINEGI 105 Query: 132 CIAHDFFYGDEPKFINAVLD 151 + + PKFIN VLD Sbjct: 106 ELGKELGGDSAPKFINGVLD 125 >gi|291518519|emb|CBK73740.1| ribosomal RNA small subunit methyltransferase RsmB [Butyrivibrio fibrisolvens 16/4] Length = 423 Score = 44.3 bits (103), Expect = 0.006, Method: Compositional matrix adjust. Identities = 23/86 (26%), Positives = 46/86 (53%), Gaps = 2/86 (2%) Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131 +++G ++RK +D +I S K ++ ++ +++R GV E+ +VP +EYV Sbjct: 49 LVNGTVERKLQLDYIIDSF--SKTKVKKMKPLIRTVMRLGVYEIYYMDAVPDSATCNEYV 106 Query: 132 CIAHDFFYGDEPKFINAVLDKVSRKE 157 +A + F+N VL +SR++ Sbjct: 107 KLAKKRGFAGLSGFVNGVLRNISREK 132 >gi|225025922|ref|ZP_03715114.1| hypothetical protein EUBHAL_00158 [Eubacterium hallii DSM 3353] gi|224956708|gb|EEG37917.1| hypothetical protein EUBHAL_00158 [Eubacterium hallii DSM 3353] Length = 133 Score = 44.3 bits (103), Expect = 0.007, Method: Compositional matrix adjust. Identities = 27/82 (32%), Positives = 42/82 (51%), Gaps = 1/82 (1%) Query: 73 IHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVC 132 I ++ R ID I S + E W RL +ILR V E+ ++P V I+E V Sbjct: 53 IGSILKRLPEIDEQIHS-ICEGWRLERLGKPELAILRLAVYEITNDANIPTGVAINEAVE 111 Query: 133 IAHDFFYGDEPKFINAVLDKVS 154 +A + + P+F+N VL K++ Sbjct: 112 LAKIYCSEEAPRFVNGVLAKLA 133 >gi|301345751|ref|ZP_07226492.1| transcription antitermination protein NusB [Acinetobacter baumannii AB056] gi|301512968|ref|ZP_07238205.1| transcription antitermination protein NusB [Acinetobacter baumannii AB058] gi|301596175|ref|ZP_07241183.1| transcription antitermination protein NusB [Acinetobacter baumannii AB059] Length = 135 Score = 43.9 bits (102), Expect = 0.007, Method: Compositional matrix adjust. Identities = 26/89 (29%), Positives = 46/89 (51%), Gaps = 2/89 (2%) Query: 64 VDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPV 123 VDL ++ ++ V+ + + +D L+ L + LD + + LR G EL + +P Sbjct: 49 VDLNYYHELLTQVIAQHEDLDALLIPVLDRE--IDALDGVELATLRLGAYELRDHLEIPY 106 Query: 124 EVIISEYVCIAHDFFYGDEPKFINAVLDK 152 V++ E + +A F D K+IN VLD+ Sbjct: 107 RVVLDEAIELAKHFGGADSHKYINGVLDR 135 >gi|291544835|emb|CBL17944.1| transcription antitermination factor NusB [Ruminococcus sp. 18P13] Length = 138 Score = 43.9 bits (102), Expect = 0.007, Method: Compositional matrix adjust. Identities = 22/89 (24%), Positives = 46/89 (51%), Gaps = 1/89 (1%) Query: 67 EWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVI 126 + R ++ G +D+ + +D +IS + K SR+ I ++LR + E++ P+ Sbjct: 44 DQVRELVEGTLDKTEELDRIISE-YSSKRGLSRIAKINIAVLRIALYEILYDEKTPMNAA 102 Query: 127 ISEYVCIAHDFFYGDEPKFINAVLDKVSR 155 I+E V ++ + ++ F+N VL +R Sbjct: 103 INEAVQLSQTYAQQEDVSFVNGVLGAYAR 131 >gi|282879285|ref|ZP_06288030.1| transcription antitermination factor NusB [Prevotella buccalis ATCC 35310] gi|281298567|gb|EFA90991.1| transcription antitermination factor NusB [Prevotella buccalis ATCC 35310] Length = 333 Score = 43.9 bits (102), Expect = 0.007, Method: Compositional matrix adjust. Identities = 22/70 (31%), Positives = 36/70 (51%) Query: 86 LISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKF 145 L S + W FSRL + I++ + E++ ++PV V I EYV A + + Sbjct: 227 LYMSETSRNWDFSRLAYMDVVIMQIAIAEMLTFPNIPVSVTIYEYVNQAKRYSTTKSGGY 286 Query: 146 INAVLDKVSR 155 IN +LD ++R Sbjct: 287 INGMLDSIAR 296 >gi|319950547|ref|ZP_08024457.1| transcription antitermination protein NusB [Dietzia cinnamea P4] gi|319435797|gb|EFV91007.1| transcription antitermination protein NusB [Dietzia cinnamea P4] Length = 189 Score = 43.9 bits (102), Expect = 0.007, Method: Compositional matrix adjust. Identities = 28/84 (33%), Positives = 43/84 (51%), Gaps = 2/84 (2%) Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELI-ECHSVPVEVIISEY 130 I+ GV +R +D IS L E W+ RL + ++LRA EL+ V V+I + Sbjct: 61 IVTGVAERLDRLDSTISEHLRE-WTLERLPAVDRAVLRAAAWELLFGSDEVDAAVVIDQA 119 Query: 131 VCIAHDFFYGDEPKFINAVLDKVS 154 V + D ++NAVLD+V+ Sbjct: 120 VLLVSDLSAEKSVPYVNAVLDRVA 143 >gi|261417120|ref|YP_003250803.1| NusB antitermination factor [Fibrobacter succinogenes subsp. succinogenes S85] gi|261373576|gb|ACX76321.1| NusB antitermination factor [Fibrobacter succinogenes subsp. succinogenes S85] gi|302325378|gb|ADL24579.1| N utilization substance protein B [Fibrobacter succinogenes subsp. succinogenes S85] Length = 146 Score = 43.9 bits (102), Expect = 0.007, Method: Compositional matrix adjust. Identities = 32/133 (24%), Positives = 65/133 (48%), Gaps = 14/133 (10%) Query: 19 ARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV-IIHGVM 77 AR+ A+Q LY ++I G + + + +E+ L +++ + + ++ V+ Sbjct: 9 ARVFAMQLLYAMEISGGTVADALPGV------------LEAQPLQDNMKKYGMKLVDLVL 56 Query: 78 DRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDF 137 K +D I +C + W R+ + +LR ++EL+ +P++V+ISE V +A F Sbjct: 57 AHKAELDSEIEAC-SAHWGIERMATLDRIVLRIAMVELLYVPEIPMKVVISEAVQVAAKF 115 Query: 138 FYGDEPKFINAVL 150 F+N +L Sbjct: 116 STDSSGTFVNGLL 128 >gi|91788748|ref|YP_549700.1| transcription antitermination protein NusB [Polaromonas sp. JS666] gi|119390795|sp|Q129J0|NUSB_POLSJ RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|91697973|gb|ABE44802.1| NusB antitermination factor [Polaromonas sp. JS666] Length = 187 Score = 43.9 bits (102), Expect = 0.007, Method: Compositional matrix adjust. Identities = 36/140 (25%), Positives = 65/140 (46%), Gaps = 15/140 (10%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLH-VDLEWFRVIIH 74 R AR A+QALYQ ++G + + I + + V H D + ++H Sbjct: 48 RTRAREFALQALYQ-HLVGRNDADSIDAFTR-----------DLVGFHKADSAHYDALLH 95 Query: 75 GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134 G ++ +D +I+ L + + + ++L G E +C VP V+I+E + +A Sbjct: 96 GCIEGASALDAVITPLLDR--PMAEISPVEHAVLWMGAYEFRQCLDVPYRVVINECIELA 153 Query: 135 HDFFYGDEPKFINAVLDKVS 154 F D K++N VL K++ Sbjct: 154 KAFGGTDGHKYVNGVLHKMA 173 >gi|146299958|ref|YP_001194549.1| transcription termination factor-like protein [Flavobacterium johnsoniae UW101] gi|146154376|gb|ABQ05230.1| Transcription termination factor-like protein [Flavobacterium johnsoniae UW101] Length = 303 Score = 43.9 bits (102), Expect = 0.007, Method: Compositional matrix adjust. Identities = 34/138 (24%), Positives = 64/138 (46%), Gaps = 12/138 (8%) Query: 30 IDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF------RVIIHGVMDRKQHI 83 +D I T II + + + E V +Y V+ + F R +++ + K++ Sbjct: 162 VDDIPVVNTHIIKQLKAIKTDNPDEFRVPKLYKDVEDKDFAKDLFRRTVLNEAVLAKEYD 221 Query: 84 DLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEP 143 D T W R+ I IL+ + E ++ S+PV+V ++EY+ IA ++ Sbjct: 222 DK------TPNWDSERIAEIDTIILKMAICEFLKFPSIPVKVTLNEYLEIAKEYSTPKSS 275 Query: 144 KFINAVLDKVSRKEEIKR 161 FIN +LD + ++ E + Sbjct: 276 IFINGILDNLVKELEASK 293 >gi|225075389|ref|ZP_03718588.1| hypothetical protein NEIFLAOT_00394 [Neisseria flavescens NRL30031/H210] gi|224953207|gb|EEG34416.1| hypothetical protein NEIFLAOT_00394 [Neisseria flavescens NRL30031/H210] Length = 142 Score = 43.9 bits (102), Expect = 0.007, Method: Compositional matrix adjust. Identities = 50/163 (30%), Positives = 69/163 (42%), Gaps = 30/163 (18%) Query: 10 LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF 69 +K RR AR AVQA+YQ I + EI EL S ++D E F Sbjct: 1 MKSPRRR--ARELAVQAIYQAGINKTAAPEIAKNIH--------ELSQTS---NMDEELF 47 Query: 70 RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSV------PV 123 + G IS L R + L I RA VL L+ CH + P Sbjct: 48 NKLFFGAQTHAAEYMEKISPLL------DRDEKDLSPIERA-VL-LVACHELSTMPETPY 99 Query: 124 EVIISEYVCIAHDFFYGDEPKFINAVLDKVS---RKEEIKRSG 163 VII+E + + F D KF+N +LD+++ R +E +R G Sbjct: 100 PVIINEAIEVTKTFGGTDGHKFVNGILDQLASRIRPDEPRRKG 142 >gi|285019596|ref|YP_003377307.1| transcription termination factor NusB [Xanthomonas albilineans GPE PC73] gi|283474814|emb|CBA17313.1| putative transcription termination factor nusb protein [Xanthomonas albilineans] Length = 155 Score = 43.9 bits (102), Expect = 0.008, Method: Compositional matrix adjust. Identities = 31/130 (23%), Positives = 57/130 (43%), Gaps = 13/130 (10%) Query: 25 QALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHID 84 QA+Y I G + +I+++ E + DL +F ++ GV+ + +D Sbjct: 29 QAIYAWQISGGNAQHVIAQFAH-----------EQAHEIADLVYFENLVEGVLKHRAELD 77 Query: 85 LLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPK 144 + L + +D I ++LR EL+ VP V+I+E + A F Sbjct: 78 AALVGYLDR--TVEEVDAIERAVLRLAAYELLYRMDVPYRVVINEAIETAKRFGSEHGHT 135 Query: 145 FINAVLDKVS 154 ++N VLD+ + Sbjct: 136 YVNGVLDRAA 145 >gi|193214274|ref|YP_001995473.1| NusB antitermination factor [Chloroherpeton thalassium ATCC 35110] gi|238692701|sp|B3QV72|NUSB_CHLT3 RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|193087751|gb|ACF13026.1| NusB antitermination factor [Chloroherpeton thalassium ATCC 35110] Length = 211 Score = 43.9 bits (102), Expect = 0.008, Method: Compositional matrix adjust. Identities = 27/94 (28%), Positives = 48/94 (51%), Gaps = 3/94 (3%) Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131 II+ V+ Q ID I+ + W +R+ +I +++R + E++ VP +V I+E + Sbjct: 51 IINSVIQNIQDIDTHIAKH-ADNWELNRMAIIDKNLMRIAIAEMLYLDDVPPKVSINEAI 109 Query: 132 CIAHDFFYGDEPKFINAVLDKVSRKEEIKRSGCV 165 IA + KF+N +LD E+K G + Sbjct: 110 EIAKRYSTDKSSKFVNGILDATY--NEVKSKGVL 141 >gi|224824226|ref|ZP_03697334.1| NusB antitermination factor [Lutiella nitroferrum 2002] gi|224603645|gb|EEG09820.1| NusB antitermination factor [Lutiella nitroferrum 2002] Length = 148 Score = 43.9 bits (102), Expect = 0.008, Method: Compositional matrix adjust. Identities = 37/145 (25%), Positives = 62/145 (42%), Gaps = 14/145 (9%) Query: 10 LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF 69 +K S RR AR AVQ +Y+ ++ +I ++ L ++ D F Sbjct: 1 MKTSRRR--AREFAVQGIYEWELNPDRPASLIEKH----------LRENDYFVKADEALF 48 Query: 70 RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISE 129 R ++ GV+ + I + + + ++L LEL + P VII+E Sbjct: 49 RTLLFGVLKDAAELSPKIDRYY--ERPADEVSPVERAVLLMAALELTQHPETPYPVIINE 106 Query: 130 YVCIAHDFFYGDEPKFINAVLDKVS 154 + I F D KF+N VLDK++ Sbjct: 107 AIEITKTFGGTDGHKFVNGVLDKLA 131 >gi|303238065|ref|ZP_07324606.1| transcription antitermination factor NusB [Prevotella disiens FB035-09AN] gi|302481761|gb|EFL44815.1| transcription antitermination factor NusB [Prevotella disiens FB035-09AN] Length = 355 Score = 43.9 bits (102), Expect = 0.008, Method: Compositional matrix adjust. Identities = 21/67 (31%), Positives = 37/67 (55%) Query: 89 SCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINA 148 S + W FSRL + I++ + E++ ++PV V I+EYV +A + +IN Sbjct: 230 SETSRNWDFSRLAYMDIVIMQIAIAEMLNFPNIPVSVSINEYVELAKLYSTPRSGSYING 289 Query: 149 VLDKVSR 155 +LD ++R Sbjct: 290 MLDAIAR 296 >gi|319951926|ref|YP_004163193.1| nusb antitermination factor [Cellulophaga algicola DSM 14237] gi|319420586|gb|ADV47695.1| NusB antitermination factor [Cellulophaga algicola DSM 14237] Length = 315 Score = 43.9 bits (102), Expect = 0.008, Method: Compositional matrix adjust. Identities = 23/77 (29%), Positives = 41/77 (53%), Gaps = 2/77 (2%) Query: 92 TEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLD 151 T W R+ I +L+ + EL+ S+P V I+EY+ +A ++ FIN +LD Sbjct: 236 TPNWDKDRIADIDAILLKMAIAELLNFPSIPERVTINEYLELAKEYSTPKSSTFINGILD 295 Query: 152 KVSRKEEIKRSGCVSAI 168 K+ + E ++ G ++ I Sbjct: 296 KLVK--EYQQEGKLNKI 310 >gi|15837557|ref|NP_298245.1| transcription antitermination protein NusB [Xylella fastidiosa 9a5c] gi|22095972|sp|Q9PES3|NUSB_XYLFA RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|9105883|gb|AAF83765.1|AE003934_7 transcription termination factor [Xylella fastidiosa 9a5c] Length = 157 Score = 43.9 bits (102), Expect = 0.008, Method: Compositional matrix adjust. Identities = 30/105 (28%), Positives = 50/105 (47%), Gaps = 5/105 (4%) Query: 58 ESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIE 117 E Y DL +F ++ GV+ +D ++ L + +D I ++LR G EL+ Sbjct: 53 EQAYEVADLAYFEDLVEGVLTHCAELDEKLTPYLDR--TIEEVDAIERAVLRLGAYELLY 110 Query: 118 CHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVS---RKEEI 159 VP V+I+E + A F ++N VLD+ + RK E+ Sbjct: 111 RQDVPYRVVINEAIMTAKRFGSKYGHTYVNGVLDRAALALRKVEV 155 >gi|317484770|ref|ZP_07943669.1| transcription antitermination factor NusB [Bilophila wadsworthia 3_1_6] gi|316923977|gb|EFV45164.1| transcription antitermination factor NusB [Bilophila wadsworthia 3_1_6] Length = 146 Score = 43.9 bits (102), Expect = 0.008, Method: Compositional matrix adjust. Identities = 24/87 (27%), Positives = 44/87 (50%), Gaps = 1/87 (1%) Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131 ++ GV +++D +I ++ W RL I ++LR V E++ VP +V I+E + Sbjct: 49 LVEGVWSNVKNLDSVIER-FSQNWRVDRLGKIELTLLRLAVFEMLYRADVPPKVAINEAL 107 Query: 132 CIAHDFFYGDEPKFINAVLDKVSRKEE 158 ++ F FIN +LD + +E Sbjct: 108 ELSTRFGDAKAKSFINGILDAAIKAQE 134 >gi|317056629|ref|YP_004105096.1| NusB antitermination factor [Ruminococcus albus 7] gi|315448898|gb|ADU22462.1| NusB antitermination factor [Ruminococcus albus 7] Length = 137 Score = 43.9 bits (102), Expect = 0.008, Method: Compositional matrix adjust. Identities = 25/95 (26%), Positives = 51/95 (53%), Gaps = 2/95 (2%) Query: 61 YLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHS 120 ++ VD E + ++ G+ +++ +D +IS ++K + SR+ + S+LR + E + Sbjct: 38 FISVDDE-VKALVRGIFEKQDELDSIISKY-SDKRAVSRIPKVDLSVLRLAIYEALYDDK 95 Query: 121 VPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSR 155 VPV V ISE V + + + F+N +L ++ Sbjct: 96 VPVNVAISEAVSLTEKYALEPDIAFVNGLLGSFAK 130 >gi|313901605|ref|ZP_07835044.1| NusB antitermination factor [Thermaerobacter subterraneus DSM 13965] gi|313468135|gb|EFR63610.1| NusB antitermination factor [Thermaerobacter subterraneus DSM 13965] Length = 214 Score = 43.9 bits (102), Expect = 0.008, Method: Compositional matrix adjust. Identities = 29/94 (30%), Positives = 46/94 (48%), Gaps = 3/94 (3%) Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECH--SVPVEVIISE 129 + GV + ID LI+ + W RL + +ILR G+ EL+ VP V I+E Sbjct: 58 LAGGVTRHRLDIDGLIARYARD-WDLERLARVDRNILRLGIYELLYAGRPDVPPPVAINE 116 Query: 130 YVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRSG 163 V +A + D +FIN +L +++R + G Sbjct: 117 AVELAKRYSSEDAARFINGILGQLARDRGLAGEG 150 >gi|289643066|ref|ZP_06475197.1| NusB antitermination factor [Frankia symbiont of Datisca glomerata] gi|289507110|gb|EFD28078.1| NusB antitermination factor [Frankia symbiont of Datisca glomerata] Length = 99 Score = 43.9 bits (102), Expect = 0.009, Method: Compositional matrix adjust. Identities = 25/77 (32%), Positives = 40/77 (51%), Gaps = 1/77 (1%) Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131 ++ GV++R ID ++S E+W+ R+ + +ILR G LEL+ +P V I E V Sbjct: 8 LVEGVVERLADIDEMLSDH-AEEWTLERMPPVDRNILRIGALELLWREDIPDGVAIDEAV 66 Query: 132 CIAHDFFYGDEPKFINA 148 +A P F+N Sbjct: 67 ALAGLVSTERSPVFVNG 83 >gi|255066867|ref|ZP_05318722.1| transcription antitermination factor NusB [Neisseria sicca ATCC 29256] gi|255048942|gb|EET44406.1| transcription antitermination factor NusB [Neisseria sicca ATCC 29256] Length = 143 Score = 43.9 bits (102), Expect = 0.009, Method: Compositional matrix adjust. Identities = 45/162 (27%), Positives = 61/162 (37%), Gaps = 26/162 (16%) Query: 10 LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF 69 +K RR AR AVQALYQ I + EI + + + D E F Sbjct: 1 MKTPRRR--ARELAVQALYQAGINNTAAPEIAKNIQD-----------QPDFAKADEELF 47 Query: 70 RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVL----ELIECHSVPVEV 125 + G I L R + L I RA +L EL P V Sbjct: 48 NKLFFGTHTHAAEYIQQIRPLL------DRDEKDLSPIERAVLLMACHELSAMPETPYPV 101 Query: 126 IISEYVCIAHDFFYGDEPKFINAVLDKVS---RKEEIKRSGC 164 II+E + + F D KF+N +LDK++ R + KR Sbjct: 102 IINEAIEVTKTFGGTDGHKFVNGILDKLAAQLRPNDPKRGNA 143 >gi|291562672|emb|CBL41488.1| transcription antitermination factor NusB [butyrate-producing bacterium SS3/4] Length = 139 Score = 43.5 bits (101), Expect = 0.009, Method: Compositional matrix adjust. Identities = 25/84 (29%), Positives = 43/84 (51%), Gaps = 1/84 (1%) Query: 73 IHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVC 132 + +M+ ID I+ + E W R+ + +ILR V E+ +P +V I+E V Sbjct: 55 VEKIMELIPEIDEKINE-IAEGWRTRRMGKVELTILRLAVFEMKYDEEIPEKVAINEAVE 113 Query: 133 IAHDFFYGDEPKFINAVLDKVSRK 156 +A F + P F+N +L K+ +K Sbjct: 114 LAKKFGGDEAPAFVNGILAKLIQK 137 >gi|302866812|ref|YP_003835449.1| transcription antitermination factor NusB [Micromonospora aurantiaca ATCC 27029] gi|315503227|ref|YP_004082114.1| nusb antitermination factor [Micromonospora sp. L5] gi|302569671|gb|ADL45873.1| transcription antitermination factor NusB [Micromonospora aurantiaca ATCC 27029] gi|315409846|gb|ADU07963.1| NusB antitermination factor [Micromonospora sp. L5] Length = 144 Score = 43.5 bits (101), Expect = 0.009, Method: Compositional matrix adjust. Identities = 24/83 (28%), Positives = 42/83 (50%), Gaps = 1/83 (1%) Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131 ++ GV ID I+S E W+ R+ ++ ++ R V EL+ + V ISE V Sbjct: 58 LVEGVAAHLDRIDETIASY-AEGWTLERMPVVDRNLARIAVYELLYVDEIDDAVAISEAV 116 Query: 132 CIAHDFFYGDEPKFINAVLDKVS 154 +A D P+F+N +L +++ Sbjct: 117 ELARQMSTDDSPRFLNGILGRIA 139 >gi|20807741|ref|NP_622912.1| transcription antitermination protein NusB [Thermoanaerobacter tengcongensis MB4] gi|22095940|sp|Q8RAD1|NUSB_THETN RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|20516294|gb|AAM24516.1| Transcription termination factor [Thermoanaerobacter tengcongensis MB4] Length = 140 Score = 43.5 bits (101), Expect = 0.009, Method: Compositional matrix adjust. Identities = 35/141 (24%), Positives = 60/141 (42%), Gaps = 14/141 (9%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 R AR V+ LYQ D+ +I + + + E+ + G Sbjct: 3 RTEAREWVVKMLYQYDVSKLPLEKIFENFYEEHDPGEQK------------EYIEGTVRG 50 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135 ++ + ID I ++ W R+ I +ILR + E++ ++PV + I+E V IA Sbjct: 51 TVEHLEEIDREIEK-YSKDWPLYRMPRIDLAILRCSMYEML-YGNIPVSISINEAVEIAK 108 Query: 136 DFFYGDEPKFINAVLDKVSRK 156 + D P FIN +L R+ Sbjct: 109 KYSTDDSPSFINGLLGAFVRE 129 >gi|225010642|ref|ZP_03701112.1| NusB antitermination factor [Flavobacteria bacterium MS024-3C] gi|225005195|gb|EEG43147.1| NusB antitermination factor [Flavobacteria bacterium MS024-3C] Length = 315 Score = 43.5 bits (101), Expect = 0.009, Method: Compositional matrix adjust. Identities = 26/77 (33%), Positives = 41/77 (53%), Gaps = 2/77 (2%) Query: 92 TEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLD 151 T KW R+ I +L+ + EL+ S+PV V I+EY+ IA ++ FIN +LD Sbjct: 236 TPKWDKDRIADIDGILLKMSICELLFFPSIPVRVTINEYLEIAKEYSTPKSSIFINGILD 295 Query: 152 KVSRKEEIKRSGCVSAI 168 +S+ E K G + + Sbjct: 296 SLSK--EYKDQGRLEKV 310 >gi|330995945|ref|ZP_08319840.1| transcription antitermination factor NusB [Paraprevotella xylaniphila YIT 11841] gi|329574284|gb|EGG55859.1| transcription antitermination factor NusB [Paraprevotella xylaniphila YIT 11841] Length = 310 Score = 43.5 bits (101), Expect = 0.009, Method: Compositional matrix adjust. Identities = 24/92 (26%), Positives = 49/92 (53%), Gaps = 1/92 (1%) Query: 65 DLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVE 124 D E+ + + ++ LIS T+ W F+R+ ++ I++ + E++ ++P+ Sbjct: 208 DREFAHRLFRNTLLNAEYYRKLISDN-TKNWEFNRIALMDLLIMQIALAEILTFPNIPLN 266 Query: 125 VIISEYVCIAHDFFYGDEPKFINAVLDKVSRK 156 V ++EYV IA + ++N +LD VS+K Sbjct: 267 VSLNEYVDIAKIYSTPRSGAYVNGLLDAVSKK 298 >gi|150024632|ref|YP_001295458.1| N utilization substance protein B [Flavobacterium psychrophilum JIP02/86] gi|149771173|emb|CAL42640.1| N utilization substance protein B homolog (NusBprotein) [Flavobacterium psychrophilum JIP02/86] Length = 303 Score = 43.5 bits (101), Expect = 0.009, Method: Compositional matrix adjust. Identities = 22/76 (28%), Positives = 43/76 (56%), Gaps = 4/76 (5%) Query: 92 TEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLD 151 T W R+ I IL+ + E ++ S+PV+V I+EY+ +A ++ FIN +LD Sbjct: 224 TPNWEADRIAEIDTIILKMAICEFLKFPSIPVKVTINEYLELAKEYSTPKSSIFINGILD 283 Query: 152 KVSRK----EEIKRSG 163 + ++ +++K++G Sbjct: 284 NLVKEFESNDKLKKTG 299 >gi|301059426|ref|ZP_07200347.1| leucine--tRNA ligase [delta proteobacterium NaphS2] gi|300446462|gb|EFK10306.1| leucine--tRNA ligase [delta proteobacterium NaphS2] Length = 1011 Score = 43.5 bits (101), Expect = 0.009, Method: Compositional matrix adjust. Identities = 25/84 (29%), Positives = 41/84 (48%), Gaps = 1/84 (1%) Query: 70 RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISE 129 R ++ GV RK +D +I ++ W R+ + SILR E++ +P V + E Sbjct: 38 RDLVSGVCQRKTILDRVIGRS-SKHWRLERMARLDRSILRLATYEMLYLEDIPPRVSLDE 96 Query: 130 YVCIAHDFFYGDEPKFINAVLDKV 153 V + F D ++IN VLD + Sbjct: 97 AVELGKRFGSEDSGRYINGVLDNI 120 >gi|254303389|ref|ZP_04970747.1| N utilization substance protein B [Fusobacterium nucleatum subsp. polymorphum ATCC 10953] gi|148323581|gb|EDK88831.1| N utilization substance protein B [Fusobacterium nucleatum subsp. polymorphum ATCC 10953] Length = 155 Score = 43.5 bits (101), Expect = 0.010, Method: Compositional matrix adjust. Identities = 26/92 (28%), Positives = 51/92 (55%), Gaps = 6/92 (6%) Query: 66 LEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEV 125 LE+ R I+G+ + +I +I T+ W+++R+ +I ++L E + P+EV Sbjct: 63 LEFIRSSINGIAENYDNIKDIIKKN-TKNWAYARIGVIERALLIVATYEF-SFKNTPIEV 120 Query: 126 IISEYVCIAHDFFYGDEP--KFINAVLDKVSR 155 I +E V +A + YG+E +F+N +L + + Sbjct: 121 IANEIVELAKE--YGNEKSYEFVNGILANIEK 150 >gi|303245564|ref|ZP_07331847.1| NusB antitermination factor [Desulfovibrio fructosovorans JJ] gi|302492827|gb|EFL52692.1| NusB antitermination factor [Desulfovibrio fructosovorans JJ] Length = 177 Score = 43.5 bits (101), Expect = 0.010, Method: Compositional matrix adjust. Identities = 25/86 (29%), Positives = 47/86 (54%), Gaps = 5/86 (5%) Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131 ++ GV ++ +D I ++ W SR+ + +ILR V E++ +P+ V ++E + Sbjct: 82 LVSGVWTNQRELDAHIVR-FSKNWKLSRIAKVELTILRLAVYEILYRSDIPLRVALNEAI 140 Query: 132 CIAHDFFYGDEP--KFINAVLDKVSR 155 +A YGDE FIN +LD +++ Sbjct: 141 ELAKR--YGDENSRNFINGILDAIAK 164 >gi|332877528|ref|ZP_08445275.1| transcription antitermination factor NusB [Capnocytophaga sp. oral taxon 329 str. F0087] gi|332684634|gb|EGJ57484.1| transcription antitermination factor NusB [Capnocytophaga sp. oral taxon 329 str. F0087] Length = 310 Score = 43.5 bits (101), Expect = 0.010, Method: Compositional matrix adjust. Identities = 24/92 (26%), Positives = 49/92 (53%), Gaps = 1/92 (1%) Query: 65 DLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVE 124 D E+ + + ++ LIS T+ W F+R+ ++ I++ + E++ ++P+ Sbjct: 208 DREFAHRLFRNTLLNAEYYRKLISDN-TKNWEFNRIALMDLLIMQIALAEILTFPNIPLN 266 Query: 125 VIISEYVCIAHDFFYGDEPKFINAVLDKVSRK 156 V ++EYV IA + ++N +LD VS+K Sbjct: 267 VSLNEYVDIAKIYSTPRSGAYVNGLLDAVSKK 298 >gi|34762362|ref|ZP_00143364.1| N utilization substance protein B [Fusobacterium nucleatum subsp. vincentii ATCC 49256] gi|27887944|gb|EAA25010.1| N utilization substance protein B [Fusobacterium nucleatum subsp. vincentii ATCC 49256] Length = 153 Score = 43.5 bits (101), Expect = 0.010, Method: Compositional matrix adjust. Identities = 26/92 (28%), Positives = 52/92 (56%), Gaps = 6/92 (6%) Query: 66 LEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEV 125 LE+ R I+G+ + I +I T+ W++ R+ ++ ++L E++ ++P+EV Sbjct: 63 LEFIRDSINGIAKNYEDIKDIIKKN-TKNWAYERIGIVERALLIVATYEIL-FKNIPIEV 120 Query: 126 IISEYVCIAHDFFYGDEP--KFINAVLDKVSR 155 I +E V +A + YG+E +F+N VL + + Sbjct: 121 IANEIVELAKE--YGNEKSYEFVNGVLANIEK 150 >gi|295425233|ref|ZP_06817936.1| transcription antitermination factor NusB [Lactobacillus amylolyticus DSM 11664] gi|295065009|gb|EFG55914.1| transcription antitermination factor NusB [Lactobacillus amylolyticus DSM 11664] Length = 131 Score = 43.5 bits (101), Expect = 0.010, Method: Compositional matrix adjust. Identities = 26/102 (25%), Positives = 54/102 (52%), Gaps = 5/102 (4%) Query: 53 TELDVESVYLHVDLE----WFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSIL 108 E++V++V + +DLE + + +I GVM ++ + I++ L + W R++ I +IL Sbjct: 26 AEVEVKTVEM-LDLEQLSAYSKTLIEGVMLKRDELKEAIAAHLKKGWRIERVNPITIAIL 84 Query: 109 RAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVL 150 + E+ + + + ++E + + DF D FIN +L Sbjct: 85 EIALYEIKDSAEIEPKAAVNEALNLCDDFTDPDAKPFINGIL 126 >gi|264679471|ref|YP_003279378.1| NusB antitermination factor [Comamonas testosteroni CNB-2] gi|299530553|ref|ZP_07043973.1| NusB antitermination factor [Comamonas testosteroni S44] gi|262209984|gb|ACY34082.1| NusB antitermination factor [Comamonas testosteroni CNB-2] gi|298721529|gb|EFI62466.1| NusB antitermination factor [Comamonas testosteroni S44] Length = 178 Score = 43.5 bits (101), Expect = 0.011, Method: Compositional matrix adjust. Identities = 37/139 (26%), Positives = 66/139 (47%), Gaps = 13/139 (9%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 R AR A+Q LYQ I+G + I RF D + + D+ + ++ G Sbjct: 35 RSRAREFALQGLYQ-HIVGRNAVLDID-----RFTRDL-----AGFHKADVVHYDALLRG 83 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135 ++ + +D LI+ L + + I + + GV E C VP V+++E + +A Sbjct: 84 CVENEAALDALITPKLDR--GLTEISPIEHACMWIGVYEFQNCPDVPWRVVLNECIELAK 141 Query: 136 DFFYGDEPKFINAVLDKVS 154 +F D K++NAVL+ ++ Sbjct: 142 EFGGTDGHKYVNAVLNGLA 160 >gi|150390264|ref|YP_001320313.1| NusB antitermination factor [Alkaliphilus metalliredigens QYMF] gi|149950126|gb|ABR48654.1| NusB antitermination factor [Alkaliphilus metalliredigens QYMF] Length = 129 Score = 43.5 bits (101), Expect = 0.011, Method: Compositional matrix adjust. Identities = 26/120 (21%), Positives = 56/120 (46%), Gaps = 9/120 (7%) Query: 47 YRFCADTELDVESVYLHVD--------LEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFS 98 + + E++VES+ L++D E+ I ++ + ID I ++ W + Sbjct: 5 FEMEMNNEMNVESIKLYMDREPQKIEQQEYVHTSITKTIENLEEIDTYIKQY-SKGWKLN 63 Query: 99 RLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEE 158 R+ + +ILR + E++ +P V ++E + + + + FIN +L + +EE Sbjct: 64 RIANVDLAILRLALTEMLHMGEIPYRVSVNEAIELGKKYSAEESASFINGILGRFIEEEE 123 >gi|167770740|ref|ZP_02442793.1| hypothetical protein ANACOL_02086 [Anaerotruncus colihominis DSM 17241] gi|167667335|gb|EDS11465.1| hypothetical protein ANACOL_02086 [Anaerotruncus colihominis DSM 17241] Length = 161 Score = 43.5 bits (101), Expect = 0.011, Method: Compositional matrix adjust. Identities = 23/77 (29%), Positives = 41/77 (53%), Gaps = 1/77 (1%) Query: 89 SCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINA 148 + ++KW +R+ + SILR + E+ +VP I+E V +A + D+ F+N Sbjct: 62 ASYSKKWKINRMSRVALSILRLSLWEIDHVDTVPAGASINEAVELAKKYGNDDDFSFVNG 121 Query: 149 VLDK-VSRKEEIKRSGC 164 VL V RK+ +++G Sbjct: 122 VLGAYVRRKDSSEQAGV 138 >gi|163755270|ref|ZP_02162390.1| putative N utilization substance protein [Kordia algicida OT-1] gi|161324690|gb|EDP96019.1| putative N utilization substance protein [Kordia algicida OT-1] Length = 302 Score = 43.5 bits (101), Expect = 0.011, Method: Compositional matrix adjust. Identities = 21/77 (27%), Positives = 42/77 (54%), Gaps = 2/77 (2%) Query: 92 TEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLD 151 T W R+ + +L+ + EL++ S+P +V I+EY+ +A ++ F+N +LD Sbjct: 223 TPNWDKDRIANLDLILLKMAICELLKFPSIPAKVTINEYIELAKEYSTSKSSMFVNGILD 282 Query: 152 KVSRKEEIKRSGCVSAI 168 K+ + E K+ ++ I Sbjct: 283 KLIK--EYKKENKLNKI 297 >gi|309810676|ref|ZP_07704484.1| transcription antitermination factor NusB [Dermacoccus sp. Ellin185] gi|308435307|gb|EFP59131.1| transcription antitermination factor NusB [Dermacoccus sp. Ellin185] Length = 138 Score = 43.5 bits (101), Expect = 0.011, Method: Compositional matrix adjust. Identities = 26/96 (27%), Positives = 49/96 (51%), Gaps = 4/96 (4%) Query: 67 EWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVI 126 E+ V++ GV+D + I+ + + W+ R+ + ++LR E++ VP V Sbjct: 44 EYTAVLVRGVVDHWRTINEALETY-ARGWTLDRMPAVDRALLRVAAYEVLYVDDVPDGVA 102 Query: 127 ISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRS 162 +SE +A + + P+FI +L K+S E+K S Sbjct: 103 VSEAKNLATELSTDNSPQFIGGLLTKLS---EVKSS 135 >gi|223041028|ref|ZP_03611286.1| transcription antitermination factor NusB [Campylobacter rectus RM3267] gi|222877700|gb|EEF12823.1| transcription antitermination factor NusB [Campylobacter rectus RM3267] Length = 131 Score = 43.5 bits (101), Expect = 0.011, Method: Compositional matrix adjust. Identities = 24/80 (30%), Positives = 42/80 (52%), Gaps = 2/80 (2%) Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131 + HG+++ +D L+++ L E W + + I ++LR G E+ + VII+E + Sbjct: 48 LFHGILEHADGLDALLNARLKE-WKINEIGSIERAVLRLGAYEM-KFTPTDKAVIINEGI 105 Query: 132 CIAHDFFYGDEPKFINAVLD 151 + + PKFIN VLD Sbjct: 106 ELGKELGGDSAPKFINGVLD 125 >gi|227833206|ref|YP_002834913.1| N utilization substance protein B [Corynebacterium aurimucosum ATCC 700975] gi|262184192|ref|ZP_06043613.1| N utilization substance protein B [Corynebacterium aurimucosum ATCC 700975] gi|259514808|sp|C3PGM1|NUSB_CORA7 RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|227454222|gb|ACP32975.1| N utilization substance protein B [Corynebacterium aurimucosum ATCC 700975] Length = 176 Score = 43.5 bits (101), Expect = 0.011, Method: Compositional matrix adjust. Identities = 25/87 (28%), Positives = 44/87 (50%) Query: 67 EWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVI 126 ++ R I+ G + ID I+ L+ +WS R+ + +I+R V E++ VP Sbjct: 58 DYTREIVSGAAEELDAIDDAIARYLSSEWSLERIPAVDRAIMRVSVWEILFNADVPNATA 117 Query: 127 ISEYVCIAHDFFYGDEPKFINAVLDKV 153 + E V +A ++ +I+AVLD V Sbjct: 118 LVEGVELASEYSNDKAAPYIHAVLDDV 144 >gi|289523061|ref|ZP_06439915.1| transcription antitermination factor NusB [Anaerobaculum hydrogeniformans ATCC BAA-1850] gi|289503604|gb|EFD24768.1| transcription antitermination factor NusB [Anaerobaculum hydrogeniformans ATCC BAA-1850] Length = 151 Score = 43.1 bits (100), Expect = 0.011, Method: Compositional matrix adjust. Identities = 38/144 (26%), Positives = 65/144 (45%), Gaps = 12/144 (8%) Query: 12 LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71 L +R AR A+Q LY +DI T + + F ++E E + + W Sbjct: 2 LQQQRRRAREIALQLLYALDIRNDQTPD--EAMALFPFDGESE---EVMNYAI---W--- 50 Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131 ++ + ++ ID LI +T W R+ + +R + E + VP+ V ISE + Sbjct: 51 LVKEIWGKRVEIDNLIRMHIT-GWRPERMVTVDLEAIRLALFEGVYSKVVPIPVAISEAI 109 Query: 132 CIAHDFFYGDEPKFINAVLDKVSR 155 +A F + +F+N VL K+ R Sbjct: 110 ELAKRFGTENSGRFVNGVLGKIVR 133 >gi|309804286|ref|ZP_07698363.1| transcription antitermination factor NusB [Lactobacillus iners LactinV 11V1-d] gi|312872493|ref|ZP_07732562.1| transcription antitermination factor NusB [Lactobacillus iners LEAF 2062A-h1] gi|315653399|ref|ZP_07906321.1| transcription antitermination protein NusB [Lactobacillus iners ATCC 55195] gi|308163689|gb|EFO65959.1| transcription antitermination factor NusB [Lactobacillus iners LactinV 11V1-d] gi|311092075|gb|EFQ50450.1| transcription antitermination factor NusB [Lactobacillus iners LEAF 2062A-h1] gi|315489324|gb|EFU78964.1| transcription antitermination protein NusB [Lactobacillus iners ATCC 55195] Length = 133 Score = 43.1 bits (100), Expect = 0.011, Method: Compositional matrix adjust. Identities = 34/131 (25%), Positives = 56/131 (42%), Gaps = 10/131 (7%) Query: 20 RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79 R+ A+QALY D + E+E +DV + D + I+ GVM Sbjct: 7 RVIAMQALYLADQV--------HEHEDVDAIKKKTMDVLDIKEFPDYAY--EILQGVMKE 56 Query: 80 KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139 K ID ++ L + W+ RL+ I IL G+ E+ + ++E + + +F Sbjct: 57 KSSIDANLTKYLKKGWTLERLNKIDLVILEVGLFEIQNSKVIKPVSALNEALNMCDEFSS 116 Query: 140 GDEPKFINAVL 150 FIN +L Sbjct: 117 AKSKGFINGIL 127 >gi|288928412|ref|ZP_06422259.1| NusB family protein [Prevotella sp. oral taxon 317 str. F0108] gi|288331246|gb|EFC69830.1| NusB family protein [Prevotella sp. oral taxon 317 str. F0108] Length = 347 Score = 43.1 bits (100), Expect = 0.012, Method: Compositional matrix adjust. Identities = 20/64 (31%), Positives = 36/64 (56%) Query: 92 TEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLD 151 + W FSRL + I++ + E++ ++PV V I+EYV +A + +IN +LD Sbjct: 208 SRNWDFSRLAYMDVVIMQIAIAEMLNFPNIPVSVTINEYVELAKLYSTHRSGGYINGMLD 267 Query: 152 KVSR 155 ++R Sbjct: 268 TIAR 271 >gi|260912453|ref|ZP_05918990.1| N utilization substance protein NusB [Prevotella sp. oral taxon 472 str. F0295] gi|260633425|gb|EEX51578.1| N utilization substance protein NusB [Prevotella sp. oral taxon 472 str. F0295] Length = 372 Score = 43.1 bits (100), Expect = 0.012, Method: Compositional matrix adjust. Identities = 20/64 (31%), Positives = 36/64 (56%) Query: 92 TEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLD 151 + W FSRL + I++ + E++ ++PV V I+EYV +A + +IN +LD Sbjct: 233 SRNWDFSRLAYMDVVIMQIAIAEMLTFPNIPVSVTINEYVELAKLYSTHRSGGYINGMLD 292 Query: 152 KVSR 155 ++R Sbjct: 293 TIAR 296 >gi|167756946|ref|ZP_02429073.1| hypothetical protein CLORAM_02495 [Clostridium ramosum DSM 1402] gi|237734649|ref|ZP_04565130.1| predicted protein [Mollicutes bacterium D7] gi|167703121|gb|EDS17700.1| hypothetical protein CLORAM_02495 [Clostridium ramosum DSM 1402] gi|229382469|gb|EEO32560.1| predicted protein [Coprobacillus sp. D7] Length = 134 Score = 43.1 bits (100), Expect = 0.012, Method: Compositional matrix adjust. Identities = 37/140 (26%), Positives = 65/140 (46%), Gaps = 10/140 (7%) Query: 14 HRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVII 73 +R+ I R AV A YQ ++ + EI R +++ D+ S D ++ + I Sbjct: 4 YRKKIIREKAVIATYQKLLVDTNEDEI-------REYLNSDKDLSSN--QDDFDYCFMFI 54 Query: 74 HGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCI 133 + + ++ L W+ RL + +IL G EL+E EVII+E V + Sbjct: 55 ISIASNIERYKAEVAKYLKPGWTLDRLSKMELAILLVGCYELLETEQSK-EVIINEAVEL 113 Query: 134 AHDFFYGDEPKFINAVLDKV 153 + + D KFIN +L+++ Sbjct: 114 SKKYCDSDAYKFINGLLNRI 133 >gi|223043157|ref|ZP_03613204.1| transcription antitermination factor NusB [Staphylococcus capitis SK14] gi|314933698|ref|ZP_07841063.1| transcription antitermination factor NusB [Staphylococcus caprae C87] gi|222443368|gb|EEE49466.1| transcription antitermination factor NusB [Staphylococcus capitis SK14] gi|313653848|gb|EFS17605.1| transcription antitermination factor NusB [Staphylococcus caprae C87] Length = 129 Score = 43.1 bits (100), Expect = 0.012, Method: Compositional matrix adjust. Identities = 40/142 (28%), Positives = 63/142 (44%), Gaps = 17/142 (11%) Query: 16 RGIARLAAVQALYQIDI--IGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVII 73 R +R+ A Q L+Q+++ S TE I+ F D Y +D ++ ++ Sbjct: 3 RKESRIQAFQTLFQLEMKESDLSITEAIN------FIKDD-------YPDLDFDFINWLV 49 Query: 74 HGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCI 133 GV D + +D L + WS RL ILR E++ + P +VII+E V + Sbjct: 50 TGVKDHEAVLDEKFKPYLKD-WSIERLLKSDRIILRMATFEMLHSDT-PEKVIINEAVEL 107 Query: 134 AHDFFYGDEPKFINAVLDKVSR 155 F KFIN VL ++ Sbjct: 108 TKQFSDDGHYKFINGVLSNINN 129 >gi|325954222|ref|YP_004237882.1| NusB antitermination factor [Weeksella virosa DSM 16922] gi|323436840|gb|ADX67304.1| NusB antitermination factor [Weeksella virosa DSM 16922] Length = 306 Score = 43.1 bits (100), Expect = 0.013, Method: Compositional matrix adjust. Identities = 24/88 (27%), Positives = 40/88 (45%), Gaps = 5/88 (5%) Query: 69 FRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIIS 128 FR+ + K+ I + E W R+ + IL + E S+P +V I+ Sbjct: 207 FRLTVKHQSQNKEFI-----GQMAENWELDRIAAVDLIILEMAITEFKHFPSIPTKVTIN 261 Query: 129 EYVCIAHDFFYGDEPKFINAVLDKVSRK 156 EY+ +A ++ F+N +LDK RK Sbjct: 262 EYIELAKNYSTEKSRIFVNGILDKALRK 289 >gi|259501554|ref|ZP_05744456.1| conserved hypothetical protein [Lactobacillus iners DSM 13335] gi|302191472|ref|ZP_07267726.1| transcription antitermination factor NusB [Lactobacillus iners AB-1] gi|309805466|ref|ZP_07699511.1| transcription antitermination factor NusB [Lactobacillus iners LactinV 09V1-c] gi|309808800|ref|ZP_07702685.1| transcription antitermination factor NusB [Lactobacillus iners LactinV 01V1-a] gi|309809548|ref|ZP_07703406.1| transcription antitermination factor NusB [Lactobacillus iners SPIN 2503V10-D] gi|312871882|ref|ZP_07731966.1| transcription antitermination factor NusB [Lactobacillus iners LEAF 3008A-a] gi|312874396|ref|ZP_07734426.1| transcription antitermination factor NusB [Lactobacillus iners LEAF 2052A-d] gi|312874533|ref|ZP_07734558.1| transcription antitermination factor NusB [Lactobacillus iners LEAF 2053A-b] gi|325911876|ref|ZP_08174280.1| transcription antitermination factor NusB [Lactobacillus iners UPII 143-D] gi|325913448|ref|ZP_08175814.1| transcription antitermination factor NusB [Lactobacillus iners UPII 60-B] gi|329919881|ref|ZP_08276819.1| transcription antitermination factor NusB [Lactobacillus iners SPIN 1401G] gi|259167072|gb|EEW51567.1| conserved hypothetical protein [Lactobacillus iners DSM 13335] gi|308165117|gb|EFO67355.1| transcription antitermination factor NusB [Lactobacillus iners LactinV 09V1-c] gi|308167926|gb|EFO70059.1| transcription antitermination factor NusB [Lactobacillus iners LactinV 01V1-a] gi|308170220|gb|EFO72255.1| transcription antitermination factor NusB [Lactobacillus iners SPIN 2503V10-D] gi|311089924|gb|EFQ48343.1| transcription antitermination factor NusB [Lactobacillus iners LEAF 2053A-b] gi|311090008|gb|EFQ48422.1| transcription antitermination factor NusB [Lactobacillus iners LEAF 2052A-d] gi|311092604|gb|EFQ50964.1| transcription antitermination factor NusB [Lactobacillus iners LEAF 3008A-a] gi|325476382|gb|EGC79544.1| transcription antitermination factor NusB [Lactobacillus iners UPII 143-D] gi|325477217|gb|EGC80363.1| transcription antitermination factor NusB [Lactobacillus iners UPII 60-B] gi|328936971|gb|EGG33401.1| transcription antitermination factor NusB [Lactobacillus iners SPIN 1401G] Length = 133 Score = 43.1 bits (100), Expect = 0.013, Method: Compositional matrix adjust. Identities = 34/131 (25%), Positives = 56/131 (42%), Gaps = 10/131 (7%) Query: 20 RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79 R+ A+QALY D + E+E +DV + D + I+ GVM Sbjct: 7 RVIAMQALYLADQV--------HEHEDVDAIKKKTMDVLDIKEFPDYAY--EILQGVMKE 56 Query: 80 KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139 K ID ++ L + W+ RL+ I IL G+ E+ + ++E + + +F Sbjct: 57 KSSIDANLAKYLKKGWTLERLNKIDLVILEVGLFEIQNSKVIKPVSALNEALNMCDEFSS 116 Query: 140 GDEPKFINAVL 150 FIN +L Sbjct: 117 AKSKGFINGIL 127 >gi|110638835|ref|YP_679044.1| antitermination factor [Cytophaga hutchinsonii ATCC 33406] gi|110281516|gb|ABG59702.1| antitermination factor [Cytophaga hutchinsonii ATCC 33406] Length = 389 Score = 43.1 bits (100), Expect = 0.013, Method: Compositional matrix adjust. Identities = 19/73 (26%), Positives = 42/73 (57%), Gaps = 2/73 (2%) Query: 93 EKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDK 152 + W RL IL+ + E+++ ++PV+V I+EY+ ++ + +F+N +LD Sbjct: 308 QNWDIERLAFTDRIILKMALTEMVKFPNIPVKVTINEYIELSKSYSTPKSKQFVNGLLDT 367 Query: 153 VSRKEEIKRSGCV 165 +S ++++SG + Sbjct: 368 ISI--DLQKSGLI 378 >gi|154498049|ref|ZP_02036427.1| hypothetical protein BACCAP_02030 [Bacteroides capillosus ATCC 29799] gi|150273039|gb|EDN00196.1| hypothetical protein BACCAP_02030 [Bacteroides capillosus ATCC 29799] Length = 223 Score = 43.1 bits (100), Expect = 0.013, Method: Compositional matrix adjust. Identities = 27/94 (28%), Positives = 44/94 (46%), Gaps = 1/94 (1%) Query: 67 EWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVI 126 E+ ++ GV +D IS W+FSR+ I +++R + E++ VP Sbjct: 104 EYISELVRGVYFHCPELDDYISRYAI-GWTFSRIPRIAVAVMRVAMYEILYMQDVPNAAA 162 Query: 127 ISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIK 160 I+E + IA + + FIN +L RKE I Sbjct: 163 INEALEIAKGYETPEVVSFINGILGSFVRKESIP 196 >gi|261365604|ref|ZP_05978487.1| transcription antitermination factor NusB [Neisseria mucosa ATCC 25996] gi|288565933|gb|EFC87493.1| transcription antitermination factor NusB [Neisseria mucosa ATCC 25996] Length = 143 Score = 43.1 bits (100), Expect = 0.013, Method: Compositional matrix adjust. Identities = 45/161 (27%), Positives = 61/161 (37%), Gaps = 26/161 (16%) Query: 10 LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF 69 +K RR AR AVQALYQ I + EI + + + D E F Sbjct: 1 MKTPRRR--ARELAVQALYQAGINNTAAPEIAKNIQD-----------QPDFAKADEELF 47 Query: 70 RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVL----ELIECHSVPVEV 125 + G I L R + L I RA +L EL P V Sbjct: 48 NKLFFGTHTHAAEYIQQIRPLL------DRDEKDLSPIERAVLLMACHELSAMPETPYPV 101 Query: 126 IISEYVCIAHDFFYGDEPKFINAVLDKVS---RKEEIKRSG 163 II+E + + F D KF+N +LDK++ R + KR Sbjct: 102 IINEAIEVTKTFGGTDGHKFVNGILDKLAAQLRPNDPKRGN 142 >gi|291166741|gb|EFE28787.1| transcription antitermination factor NusB [Filifactor alocis ATCC 35896] Length = 142 Score = 43.1 bits (100), Expect = 0.014, Method: Compositional matrix adjust. Identities = 22/69 (31%), Positives = 41/69 (59%), Gaps = 2/69 (2%) Query: 92 TEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLD 151 +++W SR+ + +IL+ V E++ +PV V I+E V ++ + D KFIN +L Sbjct: 64 SKRWDVSRMIKLDLTILKLAVTEMMYYDDIPVAVAINEAVSLSKKYSGEDSYKFINGILK 123 Query: 152 KVS--RKEE 158 +++ +KEE Sbjct: 124 QITIDQKEE 132 >gi|283797531|ref|ZP_06346684.1| transcription antitermination factor NusB [Clostridium sp. M62/1] gi|291074900|gb|EFE12264.1| transcription antitermination factor NusB [Clostridium sp. M62/1] Length = 147 Score = 43.1 bits (100), Expect = 0.014, Method: Compositional matrix adjust. Identities = 28/100 (28%), Positives = 49/100 (49%), Gaps = 7/100 (7%) Query: 54 ELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVL 113 ELDV D + + + V+++ +D I+ E W+ R+ + +ILR + Sbjct: 54 ELDV------YDSGYVKNKVEKVLEKLTELDTAINET-AEGWTTRRMGKVELTILRLALF 106 Query: 114 ELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKV 153 E+ VP +V I+E V +A F + P F+N +L K+ Sbjct: 107 EIRYDEEVPDKVAINEAVELAKKFGGDESPAFVNGILAKL 146 >gi|225011815|ref|ZP_03702253.1| transcription antitermination factor NusB [Flavobacteria bacterium MS024-2A] gi|225004318|gb|EEG42290.1| transcription antitermination factor NusB [Flavobacteria bacterium MS024-2A] Length = 314 Score = 43.1 bits (100), Expect = 0.014, Method: Compositional matrix adjust. Identities = 20/65 (30%), Positives = 35/65 (53%) Query: 92 TEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLD 151 T W R+ + IL+ + EL+ +P +V ++EY+ IA D+ F+N VLD Sbjct: 235 TPNWDAERIAQLDNVILKVAIAELLYFPMIPSKVTLNEYLEIAKDYSTPKSNNFVNGVLD 294 Query: 152 KVSRK 156 K+ ++ Sbjct: 295 KLVKE 299 >gi|257452280|ref|ZP_05617579.1| transcription antitermination protein NusB [Fusobacterium sp. 3_1_5R] Length = 138 Score = 43.1 bits (100), Expect = 0.014, Method: Compositional matrix adjust. Identities = 44/145 (30%), Positives = 74/145 (51%), Gaps = 17/145 (11%) Query: 11 KLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFR 70 K++ R AR + ++Q +I G S E + F + E++ + V V LE +R Sbjct: 4 KMTRRE--AREELFKWIFQTEIQGNSVEEAFE----HSFLRE-EIEKDEVS-KVFLERYR 55 Query: 71 VIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEY 130 G+++ ++ + I + +T+ W R+ + S+L+ V E I +PVE+I++E Sbjct: 56 ---KGMVEHQEEVAEKIEAAMTD-WDLPRIGYVEKSLLKIAVYE-IYFEDLPVEIIVNEA 110 Query: 131 VCIAHDFFYGD--EPKFINAVLDKV 153 V IA YGD +FIN VL KV Sbjct: 111 VEIAK--IYGDVKTHEFINGVLAKV 133 >gi|226311922|ref|YP_002771816.1| N utilization substance protein B [Brevibacillus brevis NBRC 100599] gi|226094870|dbj|BAH43312.1| N utilization substance protein B [Brevibacillus brevis NBRC 100599] Length = 137 Score = 43.1 bits (100), Expect = 0.014, Method: Compositional matrix adjust. Identities = 36/148 (24%), Positives = 65/148 (43%), Gaps = 15/148 (10%) Query: 15 RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74 +R AR VQ L+QID+ T+ ++ L +E + ++ R ++ Sbjct: 5 KRRTAREKVVQCLFQIDMAEVPLTDAVA------------LVMEES--EENAQYLRYLLD 50 Query: 75 GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134 GV+ ID I L W R+ + +ILR E++ P +V+++E + +A Sbjct: 51 GVLKNLTEIDAEIKKYL-RGWQLERIANVDRAILRLAFYEIMFEQDTPDKVVMNEAIEVA 109 Query: 135 HDFFYGDEPKFINAVLDKVSRKEEIKRS 162 F ++IN VL + E K++ Sbjct: 110 KLFSDEQSHRYINGVLSSFLQSRETKQA 137 >gi|307150111|ref|YP_003885495.1| NusB antitermination factor [Cyanothece sp. PCC 7822] gi|306980339|gb|ADN12220.1| NusB antitermination factor [Cyanothece sp. PCC 7822] Length = 212 Score = 43.1 bits (100), Expect = 0.014, Method: Compositional matrix adjust. Identities = 32/87 (36%), Positives = 48/87 (55%), Gaps = 6/87 (6%) Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131 II V R++ I+ +++ + + W SRL I ILR V E++ VP +V I+E V Sbjct: 123 IIGTVFRRQKEIEQQLATGMVD-WQLSRLPKIDRDILRIAVAEML-FLEVPQKVAINEAV 180 Query: 132 CIAHDFFYGDEP--KFINAVLDKVSRK 156 IA Y DE +FIN VL +V+ + Sbjct: 181 EIAKR--YSDEEGYRFINGVLRRVTEQ 205 >gi|206602422|gb|EDZ38903.1| Transcription antitermination factor (NusB) [Leptospirillum sp. Group II '5-way CG'] Length = 168 Score = 43.1 bits (100), Expect = 0.014, Method: Compositional matrix adjust. Identities = 27/87 (31%), Positives = 45/87 (51%), Gaps = 2/87 (2%) Query: 69 FRVIIHG-VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVII 127 FR + G + + + ID IS + WS R+ + +ILR G+ E++ VP V I Sbjct: 58 FRDRLGGTIREHRAEIDDTISR-FSVDWSLDRMGRVDRNILRMGICEILFEPEVPFRVTI 116 Query: 128 SEYVCIAHDFFYGDEPKFINAVLDKVS 154 E + +AH F + +FIN +L ++ Sbjct: 117 DESLELAHQFSEPEAVRFINGILHRIG 143 >gi|218441932|ref|YP_002380261.1| transcription antitermination protein NusB [Cyanothece sp. PCC 7424] gi|254772630|sp|B7KFR8|NUSB_CYAP7 RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|218174660|gb|ACK73393.1| NusB antitermination factor [Cyanothece sp. PCC 7424] Length = 212 Score = 43.1 bits (100), Expect = 0.014, Method: Compositional matrix adjust. Identities = 32/87 (36%), Positives = 47/87 (54%), Gaps = 6/87 (6%) Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131 II V R+ I+ +++ + + W +RL I ILR V E+I VP +V I+E V Sbjct: 123 IIQTVYRRQTEIEQELATVMVD-WQLNRLPKIDRDILRIAVAEMI-FLEVPQKVAINEAV 180 Query: 132 CIAHDFFYGDEP--KFINAVLDKVSRK 156 IA Y DE +FIN VL +V+ + Sbjct: 181 EIAKR--YSDEEGYRFINGVLRRVTER 205 >gi|321310948|ref|YP_004193277.1| transcription termination factor N-utilization substance protein B [Mycoplasma haemofelis str. Langford 1] gi|319802792|emb|CBY93438.1| transcription termination factor N-utilization substance protein B [Mycoplasma haemofelis str. Langford 1] Length = 136 Score = 43.1 bits (100), Expect = 0.015, Method: Compositional matrix adjust. Identities = 26/89 (29%), Positives = 43/89 (48%), Gaps = 1/89 (1%) Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131 I +D KQ +I S L WS RL+ + SIL + E P++V+I+E V Sbjct: 48 IFDNYLDNKQRYISVIESYLNADWSLERLNTLCASILLEAISEF-HVLKTPIKVLITESV 106 Query: 132 CIAHDFFYGDEPKFINAVLDKVSRKEEIK 160 A ++ +E + +N VL+ + E + Sbjct: 107 KTAKNYCDENEYRIVNRVLEDFLKNEAVN 135 >gi|213963621|ref|ZP_03391873.1| antitermination protein NusB [Capnocytophaga sputigena Capno] gi|213953749|gb|EEB65079.1| antitermination protein NusB [Capnocytophaga sputigena Capno] Length = 302 Score = 43.1 bits (100), Expect = 0.015, Method: Compositional matrix adjust. Identities = 36/141 (25%), Positives = 68/141 (48%), Gaps = 10/141 (7%) Query: 30 IDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISS 89 +D T I+ E++ R + S+Y + + + F V ++ + D + S Sbjct: 161 MDDFPIVNTFIVREFKNLRPNPPEKYFTPSLYNNSEEKEFLV---DLLKKTALNDAKLKS 217 Query: 90 CLTEK---WSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFI 146 + +K W R+ ++ IL+ + E + S+PV+V I+EY+ +A ++ FI Sbjct: 218 FVEDKLTNWDKERVAVLDLIILKMAICEFLHFPSIPVKVTINEYLELAKEYSTAKSSLFI 277 Query: 147 NAVLD----KVSRKEEIKRSG 163 N VL+ ++S KE IK+ G Sbjct: 278 NGVLNVVHKELSEKELIKKIG 298 >gi|270339970|ref|ZP_06006596.2| NusB family protein [Prevotella bergensis DSM 17361] gi|270333141|gb|EFA43927.1| NusB family protein [Prevotella bergensis DSM 17361] Length = 369 Score = 42.7 bits (99), Expect = 0.015, Method: Compositional matrix adjust. Identities = 24/87 (27%), Positives = 42/87 (48%), Gaps = 5/87 (5%) Query: 69 FRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIIS 128 FR I D +++ S + W FSRL + I++ + E++ ++P V I+ Sbjct: 215 FRATILNADDYHRYM-----SETSRNWDFSRLAYMDVVIMQIAIAEMLTFPNIPATVTIN 269 Query: 129 EYVCIAHDFFYGDEPKFINAVLDKVSR 155 EYV +A + +IN +LD + R Sbjct: 270 EYVELAKLYSTPRSGAYINGMLDSIGR 296 >gi|320334545|ref|YP_004171256.1| NusB antitermination factor [Deinococcus maricopensis DSM 21211] gi|319755834|gb|ADV67591.1| NusB antitermination factor [Deinococcus maricopensis DSM 21211] Length = 169 Score = 42.7 bits (99), Expect = 0.016, Method: Compositional matrix adjust. Identities = 23/90 (25%), Positives = 44/90 (48%), Gaps = 2/90 (2%) Query: 66 LEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEV 125 +++ R ++ R+ +D L++ + W+F ++ ++LR E++ P Sbjct: 62 VDFARDLLGAQTARRAEVDSLLTRTI-RGWTFEQMAQTDLNVLRLATAEMLRGED-PHPP 119 Query: 126 IISEYVCIAHDFFYGDEPKFINAVLDKVSR 155 II +V +A F D +F+N VL VSR Sbjct: 120 IIESFVRVARKFGGEDSGRFVNGVLSGVSR 149 >gi|303250733|ref|ZP_07336929.1| transcription antitermination protein NusB [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|303252024|ref|ZP_07338195.1| transcription antitermination protein NusB [Actinobacillus pleuropneumoniae serovar 2 str. 4226] gi|302649454|gb|EFL79639.1| transcription antitermination protein NusB [Actinobacillus pleuropneumoniae serovar 2 str. 4226] gi|302650403|gb|EFL80563.1| transcription antitermination protein NusB [Actinobacillus pleuropneumoniae serovar 6 str. Femo] Length = 98 Score = 42.7 bits (99), Expect = 0.016, Method: Compositional matrix adjust. Identities = 30/91 (32%), Positives = 48/91 (52%), Gaps = 2/91 (2%) Query: 64 VDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPV 123 VDL +FR ++ G + + ID + L + +D I +ILR EL VP Sbjct: 4 VDLPYFRKLLRGTVLYVEAIDNDLRPFLDR--AEDEVDPIERTILRLSAYELKYELDVPY 61 Query: 124 EVIISEYVCIAHDFFYGDEPKFINAVLDKVS 154 +V+I+E + +A F D K+IN +LDK++ Sbjct: 62 KVVINEGIEVAKVFGSDDSHKYINGILDKLA 92 >gi|300172801|ref|YP_003771966.1| N utilization substance protein B [Leuconostoc gasicomitatum LMG 18811] gi|299887179|emb|CBL91147.1| N utilization substance protein B homolog [Leuconostoc gasicomitatum LMG 18811] Length = 138 Score = 42.7 bits (99), Expect = 0.016, Method: Compositional matrix adjust. Identities = 23/84 (27%), Positives = 45/84 (53%), Gaps = 1/84 (1%) Query: 67 EWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVI 126 ++ +++GV+ K +D I++ L W+ +R++ ILR + EL+ + VP +V Sbjct: 44 DYLPRLVNGVLGTKSELDEQITAHLANGWAINRINKADLIILRLAIYELLN-NLVPYKVA 102 Query: 127 ISEYVCIAHDFFYGDEPKFINAVL 150 I E + + F + KF+N +L Sbjct: 103 IDEALILTKTFSDEESRKFVNGLL 126 >gi|221065986|ref|ZP_03542091.1| NusB antitermination factor [Comamonas testosteroni KF-1] gi|220711009|gb|EED66377.1| NusB antitermination factor [Comamonas testosteroni KF-1] Length = 178 Score = 42.7 bits (99), Expect = 0.016, Method: Compositional matrix adjust. Identities = 37/139 (26%), Positives = 66/139 (47%), Gaps = 13/139 (9%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 R AR A+Q LYQ I+G + I RF D + + D+ + ++ G Sbjct: 35 RSRAREFALQGLYQ-HIVGRNAVLDID-----RFTRDL-----AGFHKADVVHYDALLRG 83 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135 ++ + +D LI+ L + + I + + GV E C VP V+++E + +A Sbjct: 84 CVENEVSLDALITPKLDR--GLTEISPIEHACMWIGVYEFQNCPDVPWRVVLNECIELAK 141 Query: 136 DFFYGDEPKFINAVLDKVS 154 +F D K++NAVL+ ++ Sbjct: 142 EFGGTDGHKYVNAVLNGLA 160 >gi|319942896|ref|ZP_08017179.1| transcription antitermination factor NusB [Lautropia mirabilis ATCC 51599] gi|319743438|gb|EFV95842.1| transcription antitermination factor NusB [Lautropia mirabilis ATCC 51599] Length = 130 Score = 42.7 bits (99), Expect = 0.017, Method: Compositional matrix adjust. Identities = 25/103 (24%), Positives = 50/103 (48%), Gaps = 5/103 (4%) Query: 64 VDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPV 123 D F ++ G + + ++ ++ L + L + +IL EL + +P Sbjct: 30 ADRSHFDTLLKGTISQASALEAILLPSLDRPLNL--LSPVERAILMQATFELKDLQEIPY 87 Query: 124 EVIISEYVCIAHDFFYGDEPKFINAVLDKVS---RKEEIKRSG 163 V+I+E V +A +F D K++N VLD+++ R E++ +G Sbjct: 88 RVVINEAVELAKNFGGTDGYKYVNGVLDRIAPSVRPHEVRPAG 130 >gi|296136867|ref|YP_003644109.1| NusB antitermination factor [Thiomonas intermedia K12] gi|294341036|emb|CAZ89431.1| putative NusB antitermination factor [Thiomonas sp. 3As] gi|295796989|gb|ADG31779.1| NusB antitermination factor [Thiomonas intermedia K12] Length = 202 Score = 42.7 bits (99), Expect = 0.017, Method: Compositional matrix adjust. Identities = 28/100 (28%), Positives = 51/100 (51%), Gaps = 5/100 (5%) Query: 64 VDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPV 123 +D + F+ ++HG + +D LI + + S L + ++L G EL VP Sbjct: 48 LDDDHFQSLLHGALAEAGPLDALIQPHIDRQTS--ELSPVEHALLLMGAFELQRHLDVPY 105 Query: 124 EVIISEYVCIAHDFFYGDEPKFINAVLDKVS---RKEEIK 160 V+I+E V + + D K++N VLD+++ RK E++ Sbjct: 106 RVVINEAVELGKVYGGTDGYKYVNGVLDRIAAQLRKTEVE 145 >gi|268315608|ref|YP_003289327.1| NusB antitermination factor [Rhodothermus marinus DSM 4252] gi|262333142|gb|ACY46939.1| NusB antitermination factor [Rhodothermus marinus DSM 4252] Length = 165 Score = 42.7 bits (99), Expect = 0.017, Method: Compositional matrix adjust. Identities = 41/154 (26%), Positives = 71/154 (46%), Gaps = 15/154 (9%) Query: 14 HRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVII 73 H R R +QALY ++ G T E + + D D E++ L + R I Sbjct: 2 HSRREVRERVLQALYAYEV-GHDTAEHVIDTVLRPALKD---DREALRFATQL-FLRTIN 56 Query: 74 HGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCI 133 + + D LI+ + + W +R+ +I +LR + EL+ +P +V I+E + + Sbjct: 57 YS-----EEADRLIADHV-KNWDLTRIALIDRLLLRMAICELLAFEDIPPKVSINEAIEL 110 Query: 134 AHDFFYGDEPKFINAVLDKV----SRKEEIKRSG 163 A + +F+N VLD V R+ +K+SG Sbjct: 111 AKKYSTEKSGQFVNGVLDAVVLDLQRQGRLKKSG 144 >gi|154149182|ref|YP_001405652.1| transcription antitermination protein NusB [Campylobacter hominis ATCC BAA-381] gi|166215676|sp|A7HZG1|NUSB_CAMHC RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|153805191|gb|ABS52198.1| transcription antitermination factor NusB [Campylobacter hominis ATCC BAA-381] Length = 131 Score = 42.7 bits (99), Expect = 0.018, Method: Compositional matrix adjust. Identities = 36/137 (26%), Positives = 62/137 (45%), Gaps = 16/137 (11%) Query: 20 RLAAVQALYQIDIIGCSTTEIISEY-ETYRFCADTELDVESVYLHVDLEWFRVIIHGVMD 78 R A V LY ++ G + +SEY E R D + ++ +GV Sbjct: 8 RNAVVSLLYAKEM-GSEMNDFVSEYLEEKRIRNDQRKFADKLF------------NGVCK 54 Query: 79 RKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFF 138 ID + L E + S++ + +ILR G E++ ++ +II+E + +A + Sbjct: 55 NVNQIDNELDKYLNE-YKISQIGTVERAILRLGAYEIM-YEAIDKAIIINEAIELAKELA 112 Query: 139 YGDEPKFINAVLDKVSR 155 PKFIN VLD++ + Sbjct: 113 GESSPKFINGVLDRIGK 129 >gi|28199615|ref|NP_779929.1| transcription antitermination protein NusB [Xylella fastidiosa Temecula1] gi|182682359|ref|YP_001830519.1| transcription antitermination protein NusB [Xylella fastidiosa M23] gi|32129808|sp|Q87AS8|NUSB_XYLFT RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|238691093|sp|B2I8Q4|NUSB_XYLF2 RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|28057730|gb|AAO29578.1| transcription termination factor [Xylella fastidiosa Temecula1] gi|182632469|gb|ACB93245.1| NusB antitermination factor [Xylella fastidiosa M23] gi|307578641|gb|ADN62610.1| transcription antitermination protein NusB [Xylella fastidiosa subsp. fastidiosa GB514] Length = 157 Score = 42.7 bits (99), Expect = 0.018, Method: Compositional matrix adjust. Identities = 30/105 (28%), Positives = 50/105 (47%), Gaps = 5/105 (4%) Query: 58 ESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIE 117 E Y DL +F ++ GV+ +D ++ L + +D I ++LR G EL+ Sbjct: 53 EQAYEVADLVYFEDLVEGVLTHCAELDEKLTPYLDR--TIEEVDAIERAVLRLGAYELLY 110 Query: 118 CHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVS---RKEEI 159 VP V+I+E + A F ++N VLD+ + RK E+ Sbjct: 111 RQDVPYRVVINEAIMTAKRFGSKYGHTYVNGVLDRAALALRKVEV 155 >gi|159037466|ref|YP_001536719.1| NusB antitermination factor [Salinispora arenicola CNS-205] gi|189035900|sp|A8LY11|NUSB_SALAI RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|157916301|gb|ABV97728.1| NusB antitermination factor [Salinispora arenicola CNS-205] Length = 136 Score = 42.7 bits (99), Expect = 0.018, Method: Compositional matrix adjust. Identities = 23/83 (27%), Positives = 42/83 (50%), Gaps = 1/83 (1%) Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131 ++ G+ +D LI+S E W+ R+ + ++ R V EL+ + V ISE V Sbjct: 50 LVEGIAVHLDRLDELIASY-AEGWTLDRMPAVDRNLARIAVYELLYVDEIDDAVAISEAV 108 Query: 132 CIAHDFFYGDEPKFINAVLDKVS 154 +A D P+F+N +L +++ Sbjct: 109 ELARQMSTDDSPRFLNGILGRIA 131 >gi|258515525|ref|YP_003191747.1| sun protein [Desulfotomaculum acetoxidans DSM 771] gi|257779230|gb|ACV63124.1| sun protein [Desulfotomaculum acetoxidans DSM 771] Length = 452 Score = 42.7 bits (99), Expect = 0.018, Method: Compositional matrix adjust. Identities = 22/87 (25%), Positives = 44/87 (50%), Gaps = 2/87 (2%) Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131 +++G + +D +++ L K S + +ILR G +L+ H VP +E Sbjct: 48 LVYGTLRALNTVDWVLAQFL--KHPLSSQTAWIRNILRLGTYQLLFMHRVPASAACNEAA 105 Query: 132 CIAHDFFYGDEPKFINAVLDKVSRKEE 158 ++H + + + KF+N VL ++R+ E Sbjct: 106 KLSHKYGHKGQVKFVNGVLRNIARQHE 132 >gi|256846520|ref|ZP_05551977.1| transcription antitermination factor NusB [Fusobacterium sp. 3_1_36A2] gi|294784109|ref|ZP_06749410.1| transcription antitermination factor NusB [Fusobacterium sp. 3_1_27] gi|256718289|gb|EEU31845.1| transcription antitermination factor NusB [Fusobacterium sp. 3_1_36A2] gi|294488179|gb|EFG35524.1| transcription antitermination factor NusB [Fusobacterium sp. 3_1_27] Length = 153 Score = 42.7 bits (99), Expect = 0.018, Method: Compositional matrix adjust. Identities = 26/92 (28%), Positives = 51/92 (55%), Gaps = 6/92 (6%) Query: 66 LEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEV 125 LE+ R I+G+ + I +I T+ W++ R+ ++ ++L E++ + P+EV Sbjct: 63 LEFIRDSINGIAKNYEDIKDIIKKN-TKNWAYERIGIVERALLIVATYEIL-FKNTPIEV 120 Query: 126 IISEYVCIAHDFFYGDEP--KFINAVLDKVSR 155 I +E V +A + YG+E +F+N VL + + Sbjct: 121 IANEIVELAKE--YGNEKSYEFVNGVLANIEK 150 >gi|317132176|ref|YP_004091490.1| NusB antitermination factor [Ethanoligenens harbinense YUAN-3] gi|315470155|gb|ADU26759.1| NusB antitermination factor [Ethanoligenens harbinense YUAN-3] Length = 136 Score = 42.7 bits (99), Expect = 0.019, Method: Compositional matrix adjust. Identities = 26/88 (29%), Positives = 41/88 (46%), Gaps = 1/88 (1%) Query: 71 VIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEY 130 ++ GV D + ID I W+ SRL ++ ++LR EL+ P V I+E Sbjct: 46 MLATGVYDHRDDIDRKIEQYAI-GWTKSRLSRVVLTVLRIAFFELLYEQDTPDSVAINEA 104 Query: 131 VCIAHDFFYGDEPKFINAVLDKVSRKEE 158 V +A + + F+N VL R E+ Sbjct: 105 VELAKKYGGDGDSAFVNGVLGAFVRAEK 132 >gi|121534502|ref|ZP_01666325.1| NusB antitermination factor [Thermosinus carboxydivorans Nor1] gi|121306995|gb|EAX47914.1| NusB antitermination factor [Thermosinus carboxydivorans Nor1] Length = 141 Score = 42.7 bits (99), Expect = 0.019, Method: Compositional matrix adjust. Identities = 36/150 (24%), Positives = 70/150 (46%), Gaps = 14/150 (9%) Query: 12 LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71 +S R+ AR A+Q L+Q+D ++ + A D + V + E+ R Sbjct: 1 MSRRK--AREIALQTLFQLDF---------NDTDPVAALAALVQDRDDVSKNAQ-EYARQ 48 Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLEL-IECHSVPVEVIISEY 130 ++ G D ID +I+ E W R+ + +I+R + E+ +P V+I+E Sbjct: 49 LVTGTKDHLAEIDAIIAGQAKE-WKLERMAGVDRNIVRMAIYEMRYGQEKLPPNVVINEA 107 Query: 131 VCIAHDFFYGDEPKFINAVLDKVSRKEEIK 160 V +A F + +F+N +L + +K+ ++ Sbjct: 108 VELAKIFSTEESGRFVNGILGALVKKKALQ 137 >gi|71276430|ref|ZP_00652706.1| Antitermination protein NusB [Xylella fastidiosa Dixon] gi|71900509|ref|ZP_00682639.1| Antitermination protein NusB [Xylella fastidiosa Ann-1] gi|170730978|ref|YP_001776411.1| transcription antitermination protein NusB [Xylella fastidiosa M12] gi|238687943|sp|B0U4K2|NUSB_XYLFM RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|71162746|gb|EAO12472.1| Antitermination protein NusB [Xylella fastidiosa Dixon] gi|71729749|gb|EAO31850.1| Antitermination protein NusB [Xylella fastidiosa Ann-1] gi|167965771|gb|ACA12781.1| transcription termination factor [Xylella fastidiosa M12] Length = 157 Score = 42.7 bits (99), Expect = 0.019, Method: Compositional matrix adjust. Identities = 30/105 (28%), Positives = 50/105 (47%), Gaps = 5/105 (4%) Query: 58 ESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIE 117 E Y DL +F ++ GV+ +D ++ L + +D I ++LR G EL+ Sbjct: 53 EQAYEVADLVYFEDLVEGVLTHCAELDEKLTPYLDR--TIEEVDAIERAVLRLGAYELLY 110 Query: 118 CHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVS---RKEEI 159 VP V+I+E + A F ++N VLD+ + RK E+ Sbjct: 111 RQDVPYRVVINEAIMTAKRFGSKYGHTYVNGVLDRAALALRKVEV 155 >gi|319779127|ref|YP_004130040.1| Transcription termination protein NusB [Taylorella equigenitalis MCE9] gi|317109151|gb|ADU91897.1| Transcription termination protein NusB [Taylorella equigenitalis MCE9] Length = 144 Score = 42.4 bits (98), Expect = 0.020, Method: Compositional matrix adjust. Identities = 35/141 (24%), Positives = 63/141 (44%), Gaps = 11/141 (7%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 R AR VQ LY ++ + +I S D+ + + + DL ++ ++G Sbjct: 10 RHTARELVVQGLYSW-LLSNESQDIAS--------VDSHIREQENFDFADLNLYKTSLYG 60 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135 V+ + + ++ S S L + +I+ EL+ P V+I+E + +A Sbjct: 61 VIQNADSLREEFAPFISR--SASELSPVEHAIMLLATYELLHFPETPYRVVINEAIELAK 118 Query: 136 DFFYGDEPKFINAVLDKVSRK 156 +F D KFIN LDK++ K Sbjct: 119 EFGGTDGFKFINGALDKLAEK 139 >gi|284929125|ref|YP_003421647.1| transcription antitermination factor NusB [cyanobacterium UCYN-A] gi|284809584|gb|ADB95289.1| transcription antitermination factor NusB [cyanobacterium UCYN-A] Length = 216 Score = 42.4 bits (98), Expect = 0.020, Method: Compositional matrix adjust. Identities = 31/95 (32%), Positives = 51/95 (53%), Gaps = 3/95 (3%) Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131 IIH + +K+ +D + + L + W RL I ILR V E++ ++P +V I+E V Sbjct: 123 IIHSICRKKKELDNQLETVLKD-WQLRRLAKIDQDILRIAVAEIL-LLNIPEKVAINEAV 180 Query: 132 CIAHDFFYGDEPKFINAVLDK-VSRKEEIKRSGCV 165 +A + D +FIN VL + V +E K+ C+ Sbjct: 181 ELAKRYSDDDGYRFINGVLRRFVDHIKEEKKDECL 215 >gi|253999962|ref|YP_003052025.1| NusB antitermination factor [Methylovorus sp. SIP3-4] gi|253986641|gb|ACT51498.1| NusB antitermination factor [Methylovorus sp. SIP3-4] Length = 158 Score = 42.4 bits (98), Expect = 0.020, Method: Compositional matrix adjust. Identities = 36/117 (30%), Positives = 56/117 (47%), Gaps = 5/117 (4%) Query: 54 ELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVL 113 EL E + D E+ R ++ GV+ ++ +D I+ + L I IL Sbjct: 47 ELADEPEFDKADQEYLRKLLDGVLAEREELDRRIAVFVDR--PMQELSPIEHGILCLSAY 104 Query: 114 ELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRSGCVSAITQ 170 ELI S+P V I+E V +A + D K++N VLDK++ + R G VS T+ Sbjct: 105 ELIFDLSIPYRVAINEGVELAKIYGGTDGHKYVNGVLDKLAAE---ARPGEVSRHTR 158 >gi|325285045|ref|YP_004260835.1| NusB antitermination factor [Cellulophaga lytica DSM 7489] gi|324320499|gb|ADY27964.1| NusB antitermination factor [Cellulophaga lytica DSM 7489] Length = 315 Score = 42.4 bits (98), Expect = 0.020, Method: Compositional matrix adjust. Identities = 25/77 (32%), Positives = 40/77 (51%), Gaps = 2/77 (2%) Query: 92 TEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLD 151 T W R+ I +L+ + EL+ S+P +V I+E++ IA ++ FIN +LD Sbjct: 236 TPNWDKDRIADIDGILLKMAICELLNFPSIPEKVTINEFLEIAKEYSTPKSSIFINGILD 295 Query: 152 KVSRKEEIKRSGCVSAI 168 K+ R E K G + I Sbjct: 296 KLVR--EYKSEGKLKKI 310 >gi|290968496|ref|ZP_06560035.1| ribosomal RNA small subunit methyltransferase B [Megasphaera genomosp. type_1 str. 28L] gi|290781492|gb|EFD94081.1| ribosomal RNA small subunit methyltransferase B [Megasphaera genomosp. type_1 str. 28L] Length = 442 Score = 42.4 bits (98), Expect = 0.020, Method: Compositional matrix adjust. Identities = 25/95 (26%), Positives = 44/95 (46%), Gaps = 2/95 (2%) Query: 65 DLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVE 124 D ++ +++G + +D I + K S ++D + +ILR G+ +L VP Sbjct: 38 DRRFYTELVYGTLRYMAMLDRAIG--MLSKRSLQQMDAVCAAILRLGLYQLQYLDKVPPS 95 Query: 125 VIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEI 159 E V +A + KF+NAVL R+ E+ Sbjct: 96 AACYEAVALARKMGHEGMAKFVNAVLRNALRRPEV 130 >gi|257465920|ref|ZP_05630231.1| transcription antitermination protein NusB [Fusobacterium gonidiaformans ATCC 25563] gi|315917076|ref|ZP_07913316.1| transcription antitermination protein NusB [Fusobacterium gonidiaformans ATCC 25563] gi|317058823|ref|ZP_07923308.1| transcription antitermination protein NusB [Fusobacterium sp. 3_1_5R] gi|313684499|gb|EFS21334.1| transcription antitermination protein NusB [Fusobacterium sp. 3_1_5R] gi|313690951|gb|EFS27786.1| transcription antitermination protein NusB [Fusobacterium gonidiaformans ATCC 25563] Length = 134 Score = 42.4 bits (98), Expect = 0.021, Method: Compositional matrix adjust. Identities = 44/140 (31%), Positives = 69/140 (49%), Gaps = 15/140 (10%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 R AR + ++Q +I G S E +E + E D S V LE +R G Sbjct: 3 RREAREELFKWIFQTEIQGNSVEEA---FEHSFLREEIEKDEVS---KVFLERYR---KG 53 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135 +++ ++ + I + +T+ W R+ + S+L+ V E I +PVE+I++E V IA Sbjct: 54 MVEHQEEVAEKIEAAMTD-WDLPRIGYVEKSLLKIAVYE-IYFEDLPVEIIVNEAVEIAK 111 Query: 136 DFFYGD--EPKFINAVLDKV 153 YGD +FIN VL KV Sbjct: 112 --IYGDVKTHEFINGVLAKV 129 >gi|237739332|ref|ZP_04569813.1| transcription antitermination protein NusB [Fusobacterium sp. 2_1_31] gi|229422940|gb|EEO37987.1| transcription antitermination protein NusB [Fusobacterium sp. 2_1_31] Length = 152 Score = 42.4 bits (98), Expect = 0.021, Method: Compositional matrix adjust. Identities = 30/135 (22%), Positives = 67/135 (49%), Gaps = 9/135 (6%) Query: 25 QALYQIDIIGCSTTEIISEY--ETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQH 82 + L++I + G TE SE + + D S L++ + + G+ + + Sbjct: 21 EELFKI-VFGVEATESTSEELEKAFDIYLSNNEDFVSTLSESQLKFLQTSVKGISENYDN 79 Query: 83 IDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDE 142 I I + T+ W++ R+ ++ ++L E ++ ++ P+EV+ +E V +A + YG+E Sbjct: 80 IKDTIKAN-TQNWAYERIGLVERTLLIIATYEFLKANT-PIEVVANETVELAKE--YGNE 135 Query: 143 P--KFINAVLDKVSR 155 +F+N +L + + Sbjct: 136 KSYEFVNGILANIGK 150 >gi|323340820|ref|ZP_08081072.1| transcription antitermination factor NusB [Lactobacillus ruminis ATCC 25644] gi|323091943|gb|EFZ34563.1| transcription antitermination factor NusB [Lactobacillus ruminis ATCC 25644] Length = 128 Score = 42.4 bits (98), Expect = 0.021, Method: Compositional matrix adjust. Identities = 25/87 (28%), Positives = 44/87 (50%) Query: 67 EWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVI 126 E+ ++ GV + ID IS+ L + W SRL+ ++R V E+ VP +V Sbjct: 41 EYLTQLVDGVNEHLAEIDEAISAHLKKGWPISRLNKTDLILMRIAVYEIKFVEEVPNKVS 100 Query: 127 ISEYVCIAHDFFYGDEPKFINAVLDKV 153 ++E + ++ +F +FIN VL + Sbjct: 101 LNEALELSKEFSDETSRRFINGVLSNL 127 >gi|255658168|ref|ZP_05403577.1| transcription antitermination factor NusB [Mitsuokella multacida DSM 20544] gi|260849476|gb|EEX69483.1| transcription antitermination factor NusB [Mitsuokella multacida DSM 20544] Length = 143 Score = 42.4 bits (98), Expect = 0.021, Method: Compositional matrix adjust. Identities = 35/141 (24%), Positives = 66/141 (46%), Gaps = 8/141 (5%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTEL-DVESVYLHVDLEWFRVIIH 74 R AR A+QAL+Q+D+ + + ET DT L + E++ H D + ++H Sbjct: 3 RRQAREVALQALFQLDLNPAESADQEEMQET--LAIDTALGEAEAMSAH-DRAFVAQLVH 59 Query: 75 GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLEL--IECHSVPVEVIISEYVC 132 G + ID I++ + +W R+ + ++ R E+ E P + I+E V Sbjct: 60 GTRANLEAIDAQIAAN-SREWKVERMAAVDRNLTRMATYEMCFAEEKLTP-NIAINEAVE 117 Query: 133 IAHDFFYGDEPKFINAVLDKV 153 +A + D +++N +L + Sbjct: 118 LAKKYGTDDSSRYVNGILGAI 138 >gi|118474879|ref|YP_892479.1| transcription antitermination protein NusB [Campylobacter fetus subsp. fetus 82-40] gi|166215675|sp|A0RQJ6|NUSB_CAMFF RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|118414105|gb|ABK82525.1| transcription antitermination factor NusB [Campylobacter fetus subsp. fetus 82-40] Length = 131 Score = 42.4 bits (98), Expect = 0.021, Method: Compositional matrix adjust. Identities = 24/85 (28%), Positives = 44/85 (51%), Gaps = 2/85 (2%) Query: 71 VIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEY 130 + +GV+D ID + + L KW + + +ILR G E I+ + ++I+E Sbjct: 47 TLYNGVLDNLNLIDEALDAHLG-KWKLGEIGAVERAILRLGAYE-IKFTNTQSAIVINEA 104 Query: 131 VCIAHDFFYGDEPKFINAVLDKVSR 155 + +A++ +FIN VLD +S+ Sbjct: 105 ILLANELGSDSSTRFINGVLDAISK 129 >gi|71898912|ref|ZP_00681079.1| Antitermination protein NusB [Xylella fastidiosa Ann-1] gi|71731324|gb|EAO33388.1| Antitermination protein NusB [Xylella fastidiosa Ann-1] Length = 157 Score = 42.4 bits (98), Expect = 0.021, Method: Compositional matrix adjust. Identities = 30/105 (28%), Positives = 50/105 (47%), Gaps = 5/105 (4%) Query: 58 ESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIE 117 E Y DL +F ++ GV+ +D ++ L + +D I ++LR G EL+ Sbjct: 53 EQAYEVADLVYFEDLVEGVLTHCAELDEKLTPYLDR--TIEEVDAIERAVLRLGAYELLY 110 Query: 118 CHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVS---RKEEI 159 VP V+I+E + A F ++N VLD+ + RK E+ Sbjct: 111 RQDVPYRVVINEAIMTAKRFGSKYGHTYVNGVLDRAALVLRKVEV 155 >gi|299067743|emb|CBJ38952.1| antitermination factor (N utilization substance B) (transcriptional antiterminator) [Ralstonia solanacearum CMR15] Length = 155 Score = 42.4 bits (98), Expect = 0.022, Method: Compositional matrix adjust. Identities = 46/170 (27%), Positives = 75/170 (44%), Gaps = 35/170 (20%) Query: 4 QDN-----KKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVE 58 QDN K K + RR AR A+Q LYQ ++ + ++ + L Sbjct: 3 QDNSPAKPKAPPKSARRR--ARELALQGLYQW-LLNRNDPGVV----------EAHLHDA 49 Query: 59 SVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWS--FSRLDMILCSILRA----GV 112 + D F ++HG + + + LTE ++ R L + RA G Sbjct: 50 QGFNKADRAHFDALLHGAIREE--------ATLTESFTPFLDRPVAELSPVERAALLVGA 101 Query: 113 LELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVS---RKEEI 159 EL+ C +P +V+I+E V +A F + K++N VLDK++ R EE+ Sbjct: 102 YELVHCVDIPYKVVINEAVELAKTFGGVEGYKYVNGVLDKLAAQVRAEEV 151 >gi|328957299|ref|YP_004374685.1| ribosomal RNA small subunit methyltransferase B [Carnobacterium sp. 17-4] gi|328673623|gb|AEB29669.1| ribosomal RNA small subunit methyltransferase B [Carnobacterium sp. 17-4] Length = 458 Score = 42.4 bits (98), Expect = 0.022, Method: Compositional matrix adjust. Identities = 38/143 (26%), Positives = 62/143 (43%), Gaps = 18/143 (12%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISE--YETYRFCADTELDVESVYLHVDLEWFRVII 73 + +R A+ L + D G + +I+E + AD L E VY Sbjct: 13 KKTSRYLAMSILERTDKTGSYSNLLINEAIQKNKLSAADARLLTELVY------------ 60 Query: 74 HGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCI 133 GV+ RK +D +S L E ++D+ + ++LR + ++I +PV I+ E V + Sbjct: 61 -GVLQRKLTLDFYLSPFLNED---KKIDIWVRNLLRLSIYQMIYLDKIPVHAILFEAVEV 116 Query: 134 AHDFFYGDEPKFINAVLDKVSRK 156 A + KFIN VL R Sbjct: 117 AKKKGHVGISKFINGVLRNADRN 139 >gi|218132225|ref|ZP_03461029.1| hypothetical protein BACPEC_00082 [Bacteroides pectinophilus ATCC 43243] gi|217992884|gb|EEC58884.1| hypothetical protein BACPEC_00082 [Bacteroides pectinophilus ATCC 43243] Length = 135 Score = 42.4 bits (98), Expect = 0.022, Method: Compositional matrix adjust. Identities = 20/64 (31%), Positives = 33/64 (51%) Query: 90 CLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAV 149 ++E W R+ + +ILR V EL+ +P V I+E V +A + P F+N + Sbjct: 71 SVSEGWKLERMGKVELTILRLAVYELLYDDDIPANVAINEAVELAKVYGGDTSPAFVNGI 130 Query: 150 LDKV 153 L K+ Sbjct: 131 LAKL 134 >gi|332884936|gb|EGK05191.1| hypothetical protein HMPREF9456_03104 [Dysgonomonas mossii DSM 22836] Length = 308 Score = 42.4 bits (98), Expect = 0.022, Method: Compositional matrix adjust. Identities = 19/60 (31%), Positives = 34/60 (56%) Query: 92 TEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLD 151 T+ W R+ ++ I++ + E+IE S+P+ V ++EY+ IA + FIN +LD Sbjct: 234 TKNWESERIALMDMVIMQIAIAEIIEFPSIPISVSLNEYIDIAKSYSTIKSASFINGILD 293 >gi|125973090|ref|YP_001037000.1| sun protein [Clostridium thermocellum ATCC 27405] gi|256004593|ref|ZP_05429571.1| sun protein [Clostridium thermocellum DSM 2360] gi|281417285|ref|ZP_06248305.1| sun protein [Clostridium thermocellum JW20] gi|125713315|gb|ABN51807.1| sun protein [Clostridium thermocellum ATCC 27405] gi|255991465|gb|EEU01569.1| sun protein [Clostridium thermocellum DSM 2360] gi|281408687|gb|EFB38945.1| sun protein [Clostridium thermocellum JW20] gi|316940689|gb|ADU74723.1| sun protein [Clostridium thermocellum DSM 1313] Length = 455 Score = 42.4 bits (98), Expect = 0.023, Method: Compositional matrix adjust. Identities = 37/142 (26%), Positives = 69/142 (48%), Gaps = 19/142 (13%) Query: 20 RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79 R A++ LY I+ G + +++Y + + ES+ D + I++G + Sbjct: 11 RETALKILYDINEKGAYSNISLNKYLNGQ-------EFESI----DRAFITDIVYGTLKW 59 Query: 80 KQHIDLLISSCLTEKWSFSRLDMI---LCSILRAGVLELIECHSVPVEVIISEYVCIAHD 136 + ID LI EK+S ++ I + +ILR G+ +LI +P +E V +A Sbjct: 60 QYTIDYLI-----EKFSSVKIKKISPWIFNILRMGIYQLIYTDKIPFFAACNESVKLAAK 114 Query: 137 FFYGDEPKFINAVLDKVSRKEE 158 + + K++NAVL ++R +E Sbjct: 115 YGHAASSKYVNAVLRNIARNKE 136 >gi|254974736|ref|ZP_05271208.1| N utilization substance protein B [Clostridium difficile QCD-66c26] gi|255092125|ref|ZP_05321603.1| N utilization substance protein B [Clostridium difficile CIP 107932] gi|255100216|ref|ZP_05329193.1| N utilization substance protein B [Clostridium difficile QCD-63q42] gi|255306105|ref|ZP_05350277.1| N utilization substance protein B [Clostridium difficile ATCC 43255] gi|255313862|ref|ZP_05355445.1| N utilization substance protein B [Clostridium difficile QCD-76w55] gi|255516543|ref|ZP_05384219.1| N utilization substance protein B [Clostridium difficile QCD-97b34] gi|255649643|ref|ZP_05396545.1| N utilization substance protein B [Clostridium difficile QCD-37x79] gi|260682807|ref|YP_003214092.1| N utilization substance protein B [Clostridium difficile CD196] gi|260686405|ref|YP_003217538.1| N utilization substance protein B [Clostridium difficile R20291] gi|306519760|ref|ZP_07406107.1| N utilization substance protein B [Clostridium difficile QCD-32g58] gi|260208970|emb|CBA62018.1| N utilization substance protein B [Clostridium difficile CD196] gi|260212421|emb|CBE03285.1| N utilization substance protein B [Clostridium difficile R20291] Length = 168 Score = 42.4 bits (98), Expect = 0.023, Method: Compositional matrix adjust. Identities = 37/158 (23%), Positives = 72/158 (45%), Gaps = 21/158 (13%) Query: 15 RRGIARLAAVQALYQIDI---------------IGCSTTEIISEYE--TYRFCADTELDV 57 ++ R ++ +YQI+I + ++ II+ Y+ ++ +T L + Sbjct: 7 QKSTTREYIMKLIYQININKEDFETLEDKVDNFLKDNSEHIINRYKELALQYSKNTNLKL 66 Query: 58 ESVYLH--VDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLEL 115 E + +D ++ + + + ID LI+ + W+ R+ + SILR V E+ Sbjct: 67 EDTEIEDVIDKKYINTVCKALKENHDKIDELINKH-AKNWTVDRMPKVDVSILRLSVCEI 125 Query: 116 IECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKV 153 + + P +V I+E V +A + PKFIN +L V Sbjct: 126 LYLDT-PNKVSINEAVELAKIYCDDKSPKFINGILGSV 162 >gi|332520936|ref|ZP_08397396.1| transcription antitermination factor NusB [Lacinutrix algicola 5H-3-7-4] gi|332043466|gb|EGI79662.1| transcription antitermination factor NusB [Lacinutrix algicola 5H-3-7-4] Length = 303 Score = 42.4 bits (98), Expect = 0.023, Method: Compositional matrix adjust. Identities = 21/67 (31%), Positives = 38/67 (56%) Query: 92 TEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLD 151 T W R+ I +L+ G+ E+ + S+P +V I+EY+ I+ ++ FIN +LD Sbjct: 224 TTNWDADRIANIDYLLLKMGICEIKDFPSIPTKVTINEYLEISKEYSTPKSKVFINGILD 283 Query: 152 KVSRKEE 158 K+ ++ E Sbjct: 284 KLVKEYE 290 >gi|323484853|ref|ZP_08090209.1| transcription antitermination factor NusB [Clostridium symbiosum WAL-14163] gi|323693777|ref|ZP_08107972.1| transcription antitermination factor NusB [Clostridium symbiosum WAL-14673] gi|323401849|gb|EGA94191.1| transcription antitermination factor NusB [Clostridium symbiosum WAL-14163] gi|323502163|gb|EGB18030.1| transcription antitermination factor NusB [Clostridium symbiosum WAL-14673] Length = 171 Score = 42.4 bits (98), Expect = 0.023, Method: Compositional matrix adjust. Identities = 20/63 (31%), Positives = 34/63 (53%) Query: 91 LTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVL 150 + + W+ R+ + +ILR + E+ VP +V I+E V +A F D P F+N +L Sbjct: 108 IAKGWTTKRMGKVELTILRLALFEIQYDEDVPEKVAINEAVELAKKFGGDDSPSFVNGIL 167 Query: 151 DKV 153 K+ Sbjct: 168 AKL 170 >gi|315223935|ref|ZP_07865780.1| antitermination factor [Capnocytophaga ochracea F0287] gi|314946107|gb|EFS98111.1| antitermination factor [Capnocytophaga ochracea F0287] Length = 313 Score = 42.4 bits (98), Expect = 0.023, Method: Compositional matrix adjust. Identities = 22/73 (30%), Positives = 41/73 (56%), Gaps = 4/73 (5%) Query: 95 WSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVS 154 W R+ +I +L+ V E++ S+PV+V ++EY+ +A ++ FIN V+ V Sbjct: 237 WEKDRVAVIDSILLKMAVCEMLSFPSIPVKVTLNEYLELAKEYSTTKSSAFINGVMKNVH 296 Query: 155 R----KEEIKRSG 163 + K++IK+ G Sbjct: 297 KELEEKQQIKKIG 309 >gi|256820792|ref|YP_003142071.1| N utilization substance protein B [Capnocytophaga ochracea DSM 7271] gi|256582375|gb|ACU93510.1| N utilization substance protein B [Capnocytophaga ochracea DSM 7271] Length = 302 Score = 42.4 bits (98), Expect = 0.024, Method: Compositional matrix adjust. Identities = 22/73 (30%), Positives = 41/73 (56%), Gaps = 4/73 (5%) Query: 95 WSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVS 154 W R+ +I +L+ V E++ S+PV+V ++EY+ +A ++ FIN V+ V Sbjct: 226 WEKDRVAVIDSILLKMAVCEMLSFPSIPVKVTLNEYLELAKEYSTTKSSAFINGVMKNVH 285 Query: 155 R----KEEIKRSG 163 + K++IK+ G Sbjct: 286 KELEEKQQIKKIG 298 >gi|255655206|ref|ZP_05400615.1| N utilization substance protein B [Clostridium difficile QCD-23m63] gi|296451191|ref|ZP_06892932.1| transcription antitermination factor NusB [Clostridium difficile NAP08] gi|296880457|ref|ZP_06904419.1| transcription antitermination factor NusB [Clostridium difficile NAP07] gi|296260012|gb|EFH06866.1| transcription antitermination factor NusB [Clostridium difficile NAP08] gi|296428411|gb|EFH14296.1| transcription antitermination factor NusB [Clostridium difficile NAP07] Length = 168 Score = 42.4 bits (98), Expect = 0.024, Method: Compositional matrix adjust. Identities = 32/122 (26%), Positives = 60/122 (49%), Gaps = 6/122 (4%) Query: 36 STTEIISEYE--TYRFCADTELDVESVYLH--VDLEWFRVIIHGVMDRKQHIDLLISSCL 91 ++ II+ Y+ ++ +T L +E + +D ++ + + + ID LI+ Sbjct: 43 NSEHIINRYKELALQYSKNTNLKLEDTEIEDVIDKKYINTVCKALKENHDKIDELINKH- 101 Query: 92 TEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLD 151 + W+ R+ + SILR V E++ + P +V I+E V +A + PKFIN +L Sbjct: 102 AKNWTVDRMPKVDVSILRLSVCEILYLDT-PNKVSINEAVELAKIYCDDKSPKFINGILG 160 Query: 152 KV 153 V Sbjct: 161 SV 162 >gi|126698797|ref|YP_001087694.1| N utilization substance protein B [Clostridium difficile 630] gi|119390758|sp|Q18B61|NUSB_CLOD6 RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|115250234|emb|CAJ68055.1| N utilization substance protein B homolog (Protein NusB) [Clostridium difficile] Length = 169 Score = 42.4 bits (98), Expect = 0.024, Method: Compositional matrix adjust. Identities = 37/158 (23%), Positives = 72/158 (45%), Gaps = 21/158 (13%) Query: 15 RRGIARLAAVQALYQIDI---------------IGCSTTEIISEYE--TYRFCADTELDV 57 ++ R ++ +YQI+I + ++ II+ Y+ ++ +T L + Sbjct: 8 QKSTTREYIMKLIYQININKEDFETLEDKVDNFLKDNSEHIINRYKELALQYSKNTNLKL 67 Query: 58 ESVYLH--VDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLEL 115 E + +D ++ + + + ID LI+ + W+ R+ + SILR V E+ Sbjct: 68 EDTEIEDVIDKKYINTVCKALKENHDKIDELINKH-AKNWTVDRMPKVDVSILRLSVCEI 126 Query: 116 IECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKV 153 + + P +V I+E V +A + PKFIN +L V Sbjct: 127 LYLDT-PNKVSINEAVELAKIYCDDKSPKFINGILGSV 163 >gi|260591412|ref|ZP_05856870.1| NusB family protein [Prevotella veroralis F0319] gi|260536604|gb|EEX19221.1| NusB family protein [Prevotella veroralis F0319] Length = 357 Score = 42.0 bits (97), Expect = 0.026, Method: Compositional matrix adjust. Identities = 19/64 (29%), Positives = 35/64 (54%) Query: 92 TEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLD 151 + W FSRL + I++ + E++ ++P V I+EYV +A + +IN +LD Sbjct: 233 SRNWDFSRLAYMDVVIMQIAIAEMMTFPNIPATVTINEYVDLAKLYSTPRSGGYINGMLD 292 Query: 152 KVSR 155 ++R Sbjct: 293 TIAR 296 >gi|116333616|ref|YP_795143.1| transcription antitermination protein NusB [Lactobacillus brevis ATCC 367] gi|122269697|sp|Q03RR0|NUSB_LACBA RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|116098963|gb|ABJ64112.1| NusB antitermination factor [Lactobacillus brevis ATCC 367] Length = 142 Score = 42.0 bits (97), Expect = 0.026, Method: Compositional matrix adjust. Identities = 22/84 (26%), Positives = 39/84 (46%) Query: 67 EWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVI 126 ++ +++GV+ + +D I L+ W R+ ILR E+ VP V Sbjct: 47 DYLATLVNGVLAHQSELDAQIDQYLSTGWQLKRIAKTDLVILRMAFYEIEHVDDVPNRVA 106 Query: 127 ISEYVCIAHDFFYGDEPKFINAVL 150 ++E + +A +F +FIN VL Sbjct: 107 VNEALELAKNFSDDRSRRFINGVL 130 >gi|313201935|ref|YP_004040593.1| nusb antitermination factor [Methylovorus sp. MP688] gi|312441251|gb|ADQ85357.1| NusB antitermination factor [Methylovorus sp. MP688] Length = 158 Score = 42.0 bits (97), Expect = 0.026, Method: Compositional matrix adjust. Identities = 34/111 (30%), Positives = 53/111 (47%), Gaps = 5/111 (4%) Query: 54 ELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVL 113 EL E + D E+ R ++ GV+ ++ +D I+ + L I IL Sbjct: 47 ELADEPEFDKADQEYLRKLLDGVLAEREELDRRIAVFVDR--PMQELSPIEHGILCLSAY 104 Query: 114 ELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKV---SRKEEIKR 161 ELI S+P V I+E V +A + D K++N VLDK+ +R E+ R Sbjct: 105 ELIFDLSIPYRVAINEGVELAKIYGGTDGHKYVNGVLDKLAAEARPGEVNR 155 >gi|297623354|ref|YP_003704788.1| NusB antitermination factor [Truepera radiovictrix DSM 17093] gi|297164534|gb|ADI14245.1| NusB antitermination factor [Truepera radiovictrix DSM 17093] Length = 165 Score = 42.0 bits (97), Expect = 0.026, Method: Compositional matrix adjust. Identities = 22/77 (28%), Positives = 42/77 (54%), Gaps = 1/77 (1%) Query: 80 KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139 ++ +D +S L E W+F+++ ++LR + E++ VP EV I V IA + Sbjct: 70 REEVDARLSEAL-EGWTFAQMAQTDLAVLRLALTEILFEPEVPKEVTIEVAVRIAKRYGG 128 Query: 140 GDEPKFINAVLDKVSRK 156 + +F+N VL ++ R+ Sbjct: 129 EESGRFVNGVLGRLYRE 145 >gi|134299563|ref|YP_001113059.1| sun protein [Desulfotomaculum reducens MI-1] gi|134052263|gb|ABO50234.1| sun protein [Desulfotomaculum reducens MI-1] Length = 453 Score = 42.0 bits (97), Expect = 0.027, Method: Compositional matrix adjust. Identities = 24/86 (27%), Positives = 45/86 (52%), Gaps = 2/86 (2%) Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131 I++GV+ ID +++ L K + + + +ILR G +++ VP +E V Sbjct: 48 IVYGVLRNLNTIDWVLAHFL--KQPLASQTVWIRNILRMGTYQIMFMPRVPDSAACNESV 105 Query: 132 CIAHDFFYGDEPKFINAVLDKVSRKE 157 +A + + PKF+N VL V+R++ Sbjct: 106 NLAKKYGHQGAPKFVNGVLRNVARQQ 131 >gi|222823552|ref|YP_002575126.1| transcription antitermination factor NusB [Campylobacter lari RM2100] gi|254772621|sp|B9KFP0|NUSB_CAMLR RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|222538774|gb|ACM63875.1| transcription antitermination factor NusB [Campylobacter lari RM2100] Length = 132 Score = 42.0 bits (97), Expect = 0.027, Method: Compositional matrix adjust. Identities = 27/86 (31%), Positives = 48/86 (55%), Gaps = 8/86 (9%) Query: 74 HGVMDRKQHIDLLISSCLTEKWSFSRLDMILC---SILRAGVLELIECHSVPVEVIISEY 130 +G+ ++ +D I+ CL E +LD + +ILR G E++ S +II+E Sbjct: 50 NGINEQLALLDEKINECLKE----HKLDGVASIEKAILRLGAYEIL-FTSTQKAIIINEA 104 Query: 131 VCIAHDFFYGDEPKFINAVLDKVSRK 156 + +A + + PKFIN VLDK++++ Sbjct: 105 IELAKEMAGDNAPKFINGVLDKINKE 130 >gi|206901052|ref|YP_002250763.1| transcription antitermination factor NusB [Dictyoglomus thermophilum H-6-12] gi|254772635|sp|B5YE05|NUSB_DICT6 RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|206740155|gb|ACI19213.1| transcription antitermination factor NusB [Dictyoglomus thermophilum H-6-12] Length = 144 Score = 42.0 bits (97), Expect = 0.027, Method: Compositional matrix adjust. Identities = 23/90 (25%), Positives = 44/90 (48%), Gaps = 2/90 (2%) Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131 + G + K D +IS ++ W R+ + +ILR + E+ +P V ++E V Sbjct: 43 LYDGALQYKDLADSIISR-FSKNWKLERMGALERNILRLAIAEMFTFSDIPQAVTVNEAV 101 Query: 132 CIAHDFFYGDEPKFINAVLDKVSRK-EEIK 160 +A + + +F+N +L + R EE+K Sbjct: 102 ELAKKYVSPEAGRFVNGILRNIVRNWEEVK 131 >gi|269120364|ref|YP_003308541.1| NusB antitermination factor [Sebaldella termitidis ATCC 33386] gi|268614242|gb|ACZ08610.1| NusB antitermination factor [Sebaldella termitidis ATCC 33386] Length = 130 Score = 42.0 bits (97), Expect = 0.027, Method: Compositional matrix adjust. Identities = 27/86 (31%), Positives = 43/86 (50%), Gaps = 2/86 (2%) Query: 65 DLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVE 124 D+E+ R I V + K+ I+ I S L WSF L + ++L+ E+ E E Sbjct: 42 DIEFMREYIKNVTEHKESIEDKIKSKLV-GWSFDILGTVEKTLLKMSFYEITEA-GTGHE 99 Query: 125 VIISEYVCIAHDFFYGDEPKFINAVL 150 ++I+E V +A + P FIN +L Sbjct: 100 IVINETVELAKKYGEDKTPDFINGIL 125 >gi|218282376|ref|ZP_03488658.1| hypothetical protein EUBIFOR_01240 [Eubacterium biforme DSM 3989] gi|218216662|gb|EEC90200.1| hypothetical protein EUBIFOR_01240 [Eubacterium biforme DSM 3989] Length = 125 Score = 42.0 bits (97), Expect = 0.027, Method: Compositional matrix adjust. Identities = 22/79 (27%), Positives = 42/79 (53%), Gaps = 1/79 (1%) Query: 75 GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134 G ++ K+ + I+ L + W F RL M+ +IL E++ + P V+I+E + +A Sbjct: 48 GTIENKEAFEQKINELLRDDWDFDRLSMLEQAILLISFQEIL-ANDTPKAVVINEAITLA 106 Query: 135 HDFFYGDEPKFINAVLDKV 153 + + K +N VLD++ Sbjct: 107 KKYCDDNSYKLLNGVLDQL 125 >gi|171740948|ref|ZP_02916755.1| hypothetical protein BIFDEN_00009 [Bifidobacterium dentium ATCC 27678] gi|306823314|ref|ZP_07456689.1| transcription antitermination factor NusB [Bifidobacterium dentium ATCC 27679] gi|309802656|ref|ZP_07696760.1| transcription antitermination factor NusB [Bifidobacterium dentium JCVIHMP022] gi|171276562|gb|EDT44223.1| hypothetical protein BIFDEN_00009 [Bifidobacterium dentium ATCC 27678] gi|304553021|gb|EFM40933.1| transcription antitermination factor NusB [Bifidobacterium dentium ATCC 27679] gi|308220720|gb|EFO77028.1| transcription antitermination factor NusB [Bifidobacterium dentium JCVIHMP022] Length = 147 Score = 42.0 bits (97), Expect = 0.028, Method: Compositional matrix adjust. Identities = 37/140 (26%), Positives = 59/140 (42%), Gaps = 14/140 (10%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV-IIH 74 R AR A+ LY+ D G +++E +E L + + I+ Sbjct: 3 RSTARKRALNTLYEADEKGQDILSLLAER------------IEQPGAQTPLPDYAIEIVR 50 Query: 75 GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134 GV + ID ++ T W R+ ++ +ILR V E++ VP V I E + +A Sbjct: 51 GVAENLYRIDSVLDEHST-GWKVKRMGVVDRNILRIAVWEIMFNDDVPNMVAIDEALGLA 109 Query: 135 HDFFYGDEPKFINAVLDKVS 154 D P FI+ +L VS Sbjct: 110 KTLCDDDSPAFIHGLLSAVS 129 >gi|253578527|ref|ZP_04855799.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA] gi|251850845|gb|EES78803.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA] Length = 140 Score = 42.0 bits (97), Expect = 0.028, Method: Compositional matrix adjust. Identities = 27/98 (27%), Positives = 45/98 (45%), Gaps = 1/98 (1%) Query: 65 DLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVE 124 D E+ V+++ ID L++ + W R+ + + LR V EL VP Sbjct: 43 DQEYMSRKYRHVLEKLDEIDALLNET-SNGWKTKRMSRVDLTALRLAVYELKYDKDVPTG 101 Query: 125 VIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRS 162 V I+E V +A F F+N +L K++ E ++S Sbjct: 102 VAINEAVELAKRFGGETSGSFVNGILGKIANSESEEKS 139 >gi|237741349|ref|ZP_04571830.1| N utilization substance protein B [Fusobacterium sp. 4_1_13] gi|229430881|gb|EEO41093.1| N utilization substance protein B [Fusobacterium sp. 4_1_13] Length = 153 Score = 42.0 bits (97), Expect = 0.028, Method: Compositional matrix adjust. Identities = 25/92 (27%), Positives = 51/92 (55%), Gaps = 6/92 (6%) Query: 66 LEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEV 125 LE+ R I+G+ + I +I T+ W++ R+ ++ ++L E++ + P+EV Sbjct: 63 LEFIRDSINGIAKNYEDIKDIIKKN-TKNWAYERIGIVERALLIVATYEIL-FKNTPIEV 120 Query: 126 IISEYVCIAHDFFYGDEP--KFINAVLDKVSR 155 I +E V +A + YG+E +F+N +L + + Sbjct: 121 IANEIVELAKE--YGNEKSYEFVNGILANIEK 150 >gi|218202330|gb|EEC84757.1| hypothetical protein OsI_31764 [Oryza sativa Indica Group] Length = 570 Score = 42.0 bits (97), Expect = 0.028, Method: Composition-based stats. Identities = 26/89 (29%), Positives = 46/89 (51%), Gaps = 1/89 (1%) Query: 65 DLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVE 124 D+ VI+ G + K+++D LI S +E+ F ++ +L ILR G E+++ +VP Sbjct: 155 DIRLVTVIVAGTVRWKRYLDYLIMSLCSEEKVFREMEPLLLQILRIGFFEILKL-NVPAY 213 Query: 125 VIISEYVCIAHDFFYGDEPKFINAVLDKV 153 + E V +A +NA+L K+ Sbjct: 214 AAVDENVRLAKVALRPGAGNLVNAILRKL 242 >gi|115479747|ref|NP_001063467.1| Os09g0477900 [Oryza sativa Japonica Group] gi|52077347|dbj|BAD46388.1| sunL protein-like [Oryza sativa Japonica Group] gi|113631700|dbj|BAF25381.1| Os09g0477900 [Oryza sativa Japonica Group] gi|222641777|gb|EEE69909.1| hypothetical protein OsJ_29754 [Oryza sativa Japonica Group] Length = 570 Score = 42.0 bits (97), Expect = 0.028, Method: Composition-based stats. Identities = 26/89 (29%), Positives = 46/89 (51%), Gaps = 1/89 (1%) Query: 65 DLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVE 124 D+ VI+ G + K+++D LI S +E+ F ++ +L ILR G E+++ +VP Sbjct: 155 DIRLVTVIVAGTVRWKRYLDYLIMSLCSEEKVFREMEPLLLQILRIGFFEILKL-NVPAY 213 Query: 125 VIISEYVCIAHDFFYGDEPKFINAVLDKV 153 + E V +A +NA+L K+ Sbjct: 214 AAVDENVRLAKVALRPGAGNLVNAILRKL 242 >gi|154487009|ref|ZP_02028416.1| hypothetical protein BIFADO_00847 [Bifidobacterium adolescentis L2-32] gi|154084872|gb|EDN83917.1| hypothetical protein BIFADO_00847 [Bifidobacterium adolescentis L2-32] Length = 147 Score = 42.0 bits (97), Expect = 0.029, Method: Compositional matrix adjust. Identities = 37/144 (25%), Positives = 59/144 (40%), Gaps = 14/144 (9%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV-IIH 74 R AR A+ LY+ D G +++E +E L + + I+ Sbjct: 3 RSTARKRALNTLYEADEKGQDILSLLAER------------IEQPGAQTPLPDYAIEIVR 50 Query: 75 GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134 GV + ID ++ T W R+ ++ +ILR E++ VP V I E + +A Sbjct: 51 GVAEHIAAIDAMLDEHST-GWKVKRMGVVDRNILRIAAWEIMFNDDVPNMVAIDEALSLA 109 Query: 135 HDFFYGDEPKFINAVLDKVSRKEE 158 D P FI+ +L VS E Sbjct: 110 KTLCDDDSPAFIHGLLSAVSADAE 133 >gi|229828872|ref|ZP_04454941.1| hypothetical protein GCWU000342_00957 [Shuttleworthia satelles DSM 14600] gi|229792035|gb|EEP28149.1| hypothetical protein GCWU000342_00957 [Shuttleworthia satelles DSM 14600] Length = 152 Score = 42.0 bits (97), Expect = 0.030, Method: Compositional matrix adjust. Identities = 25/80 (31%), Positives = 40/80 (50%), Gaps = 2/80 (2%) Query: 75 GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134 G ID +I +E W SRL + ++LR V E+ + ++P + I+E V +A Sbjct: 75 GAAGHLPEIDRIIEES-SEGWKLSRLTKVDLTLLRLAVYEM-KFENLPSGIAINEAVELA 132 Query: 135 HDFFYGDEPKFINAVLDKVS 154 + P F+N VL K+S Sbjct: 133 KRYGTDKSPAFVNGVLAKIS 152 >gi|258511747|ref|YP_003185181.1| NusB antitermination factor [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] gi|257478473|gb|ACV58792.1| NusB antitermination factor [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] Length = 166 Score = 42.0 bits (97), Expect = 0.031, Method: Compositional matrix adjust. Identities = 25/89 (28%), Positives = 42/89 (47%), Gaps = 1/89 (1%) Query: 65 DLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVE 124 D + ++ G ID L++ + E+WS R+ + ++LR EL+ +P+ Sbjct: 43 DFTYIEELVDGTRRHLDEIDELLARHM-ERWSPERIGRVERNVLRLATYELLFEPELPIA 101 Query: 125 VIISEYVCIAHDFFYGDEPKFINAVLDKV 153 I E V IA F +F+N VL K+ Sbjct: 102 SAIDEAVEIAKTFATEQSGRFVNGVLAKL 130 >gi|184200984|ref|YP_001855191.1| antitermination factor NusB [Kocuria rhizophila DC2201] gi|183581214|dbj|BAG29685.1| transcription antitermination protein NusB [Kocuria rhizophila DC2201] Length = 138 Score = 42.0 bits (97), Expect = 0.033, Method: Compositional matrix adjust. Identities = 22/84 (26%), Positives = 45/84 (53%), Gaps = 1/84 (1%) Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131 I+ GV +R++ ID + + ++ W+ R+ + + LR G EL+ +P V ++E V Sbjct: 48 ILEGVDERREDIDEFLETY-SQGWALGRMPAVDRNALRVGAWELLYNSEIPDGVAVAEAV 106 Query: 132 CIAHDFFYGDEPKFINAVLDKVSR 155 + D P+F+N +L ++ + Sbjct: 107 AVTRQLSTDDSPRFVNGLLGRLQK 130 >gi|218778410|ref|YP_002429728.1| sun protein [Desulfatibacillum alkenivorans AK-01] gi|218759794|gb|ACL02260.1| sun protein [Desulfatibacillum alkenivorans AK-01] Length = 455 Score = 42.0 bits (97), Expect = 0.033, Method: Compositional matrix adjust. Identities = 30/105 (28%), Positives = 47/105 (44%), Gaps = 2/105 (1%) Query: 52 DTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAG 111 D LD E D +++GV+ + ID +ISS K ++ + +ILR G Sbjct: 33 DRALDKEPGLTRKDRALVMALVYGVLRNRGRIDWIISSF--SKTKLKKIQPEILNILRMG 90 Query: 112 VLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRK 156 V +L+ VP + + V +A KF+N +L V RK Sbjct: 91 VFQLLFLDRVPPALAVDSSVEMAKKAAPVFVSKFVNGLLRNVERK 135 >gi|257460184|ref|ZP_05625288.1| transcription antitermination factor NusB [Campylobacter gracilis RM3268] gi|257442625|gb|EEV17764.1| transcription antitermination factor NusB [Campylobacter gracilis RM3268] Length = 342 Score = 41.6 bits (96), Expect = 0.033, Method: Compositional matrix adjust. Identities = 37/133 (27%), Positives = 57/133 (42%), Gaps = 16/133 (12%) Query: 19 ARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMD 78 ARLAA+ LY D+ G + EY L+ E + W ++ G + Sbjct: 7 ARLAAISLLYSRDMNGGGE-DFADEY----------LE-EKRIRNEQRNWTLALLRGASE 54 Query: 79 RKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFF 138 +D LI L E + + + + +ILR G EL ++I+E + A + Sbjct: 55 NLAAVDALIDENLKE-FKLAEISALERAILRLGAYEL-RFTDTDAGIVINEAINSAKEL- 111 Query: 139 YGDEPKFINAVLD 151 G P+FIN VLD Sbjct: 112 -GISPRFINGVLD 123 >gi|154485073|ref|ZP_02027521.1| hypothetical protein EUBVEN_02796 [Eubacterium ventriosum ATCC 27560] gi|149734026|gb|EDM50145.1| hypothetical protein EUBVEN_02796 [Eubacterium ventriosum ATCC 27560] Length = 448 Score = 41.6 bits (96), Expect = 0.033, Method: Compositional matrix adjust. Identities = 22/84 (26%), Positives = 44/84 (52%), Gaps = 2/84 (2%) Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131 + G ++R+ ID +I+ K +++ ++ ILR GV ++ +VPV + +E V Sbjct: 54 LFQGTLERRIEIDFIINQF--SKTPVNKMKPVIREILRMGVYQIKYMDNVPVSAVCNEGV 111 Query: 132 CIAHDFFYGDEPKFINAVLDKVSR 155 +A + + F+N VL ++R Sbjct: 112 KLAEKRKFRNLKGFVNGVLRNIAR 135 >gi|226509581|ref|NP_001146662.1| hypothetical protein LOC100280262 [Zea mays] gi|219888225|gb|ACL54487.1| unknown [Zea mays] Length = 555 Score = 41.6 bits (96), Expect = 0.035, Method: Compositional matrix adjust. Identities = 26/89 (29%), Positives = 45/89 (50%), Gaps = 1/89 (1%) Query: 65 DLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVE 124 D+ VI+ G + K+++D LI S +E+ F ++ +L ILR G E+++ VP Sbjct: 140 DIRLVTVIVAGTVRWKRYLDYLIMSLCSEEKVFREMEPLLLQILRIGFFEILKL-DVPAY 198 Query: 125 VIISEYVCIAHDFFYGDEPKFINAVLDKV 153 + E V +A +NA+L K+ Sbjct: 199 AAVDENVRLAKVALRPGAGNMVNAILRKL 227 >gi|126656189|ref|ZP_01727573.1| transcription antitermination protein NusB [Cyanothece sp. CCY0110] gi|126622469|gb|EAZ93175.1| transcription antitermination protein NusB [Cyanothece sp. CCY0110] Length = 209 Score = 41.6 bits (96), Expect = 0.036, Method: Compositional matrix adjust. Identities = 29/88 (32%), Positives = 45/88 (51%), Gaps = 2/88 (2%) Query: 67 EWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVI 126 E+ +I + R+Q ID + + L + W RL I ILR V E++ VP +V Sbjct: 118 EYTLELIGTINRRRQEIDQQLEAVLKD-WQLRRLAKIDQDILRLAVAEIL-FLDVPEKVA 175 Query: 127 ISEYVCIAHDFFYGDEPKFINAVLDKVS 154 I+E V +A + D +FIN VL + + Sbjct: 176 INEAVELAKRYSDDDGYRFINGVLRRFT 203 >gi|300726454|ref|ZP_07059900.1| NusB family protein [Prevotella bryantii B14] gi|299776182|gb|EFI72746.1| NusB family protein [Prevotella bryantii B14] Length = 320 Score = 41.6 bits (96), Expect = 0.036, Method: Compositional matrix adjust. Identities = 20/67 (29%), Positives = 35/67 (52%) Query: 89 SCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINA 148 S + W FSRL + I++ + EL ++P V I+EYV +A + ++N Sbjct: 205 SDASRNWDFSRLAYMDVVIMQIAIAELCTFPNIPASVTINEYVNLAKLYSTPHSGSYVNG 264 Query: 149 VLDKVSR 155 +LD ++R Sbjct: 265 MLDGIAR 271 >gi|258545998|ref|ZP_05706232.1| N utilization substance protein B family protein (protein NusB) [Cardiobacterium hominis ATCC 15826] gi|258518766|gb|EEV87625.1| N utilization substance protein B family protein (protein NusB) [Cardiobacterium hominis ATCC 15826] Length = 144 Score = 41.6 bits (96), Expect = 0.037, Method: Compositional matrix adjust. Identities = 40/150 (26%), Positives = 63/150 (42%), Gaps = 15/150 (10%) Query: 8 KDLKLS--HRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVD 65 K+LK +R AR +QALYQ + G + R D++ Y Sbjct: 2 KNLKRQAIEQRSRARRQLLQALYQWQMSGDDPWSVRRN----RLVDPKTGDIDDDY---- 53 Query: 66 LEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEV 125 F + +++ D ++ + S LD + +IL G+ ELIE + V Sbjct: 54 ---FNAAFDTISEKRDLYDTRVAEHTHRR--PSTLDPVERAILWIGMYELIERFDIHPTV 108 Query: 126 IISEYVCIAHDFFYGDEPKFINAVLDKVSR 155 I+E V +A F D K+INA LD + + Sbjct: 109 TINEAVELAKQFGAADSYKYINATLDHLGK 138 >gi|23336051|ref|ZP_00121280.1| COG0781: Transcription termination factor [Bifidobacterium longum DJO10A] gi|23464693|ref|NP_695296.1| NusB antitermination protein [Bifidobacterium longum NCC2705] gi|189438946|ref|YP_001954027.1| transcription termination factor [Bifidobacterium longum DJO10A] gi|227546799|ref|ZP_03976848.1| NusB antitermination factor [Bifidobacterium longum subsp. infantis ATCC 55813] gi|239620779|ref|ZP_04663810.1| transcription antitermination factor NusB [Bifidobacterium longum subsp. infantis CCUG 52486] gi|312132387|ref|YP_003999726.1| nusb [Bifidobacterium longum subsp. longum BBMN68] gi|322691569|ref|YP_004221139.1| transcription antitermination factor NusB [Bifidobacterium longum subsp. longum JCM 1217] gi|32171480|sp|Q8G817|NUSB_BIFLO RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|238692035|sp|B3DQ30|NUSB_BIFLD RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|23325257|gb|AAN23932.1| NusB antitermination protein [Bifidobacterium longum NCC2705] gi|189427381|gb|ACD97529.1| Transcription termination factor [Bifidobacterium longum DJO10A] gi|227212761|gb|EEI80642.1| NusB antitermination factor [Bifidobacterium longum subsp. infantis ATCC 55813] gi|239516355|gb|EEQ56222.1| transcription antitermination factor NusB [Bifidobacterium longum subsp. infantis CCUG 52486] gi|291516175|emb|CBK69791.1| transcription antitermination factor NusB [Bifidobacterium longum subsp. longum F8] gi|311772581|gb|ADQ02069.1| NusB [Bifidobacterium longum subsp. longum BBMN68] gi|320456425|dbj|BAJ67047.1| transcription antitermination factor NusB [Bifidobacterium longum subsp. longum JCM 1217] Length = 190 Score = 41.6 bits (96), Expect = 0.037, Method: Compositional matrix adjust. Identities = 24/82 (29%), Positives = 41/82 (50%), Gaps = 1/82 (1%) Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131 I+ GV + ++ ID+ + T W R+ ++ +ILR E++ VP +V I E + Sbjct: 48 IVKGVAEHRRQIDMTLDEHST-GWKVRRMGVVDRNILRIAAWEILFTDDVPDKVAIDEAL 106 Query: 132 CIAHDFFYGDEPKFINAVLDKV 153 +A D P FI+ +L V Sbjct: 107 ALAKTLCDDDSPAFIHGLLSAV 128 >gi|242045062|ref|XP_002460402.1| hypothetical protein SORBIDRAFT_02g027560 [Sorghum bicolor] gi|241923779|gb|EER96923.1| hypothetical protein SORBIDRAFT_02g027560 [Sorghum bicolor] Length = 574 Score = 41.6 bits (96), Expect = 0.038, Method: Composition-based stats. Identities = 26/89 (29%), Positives = 45/89 (50%), Gaps = 1/89 (1%) Query: 65 DLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVE 124 D+ VI+ G + K+++D LI S +E+ F ++ +L ILR G E+++ VP Sbjct: 159 DIRLVTVIVAGTVRWKRYLDYLIMSLCSEEKVFREMEPLLLQILRIGFFEILKL-DVPAY 217 Query: 125 VIISEYVCIAHDFFYGDEPKFINAVLDKV 153 + E V +A +NA+L K+ Sbjct: 218 AAVDENVKLAKVALRPGAGNMVNAILRKL 246 >gi|167762592|ref|ZP_02434719.1| hypothetical protein BACSTE_00948 [Bacteroides stercoris ATCC 43183] gi|167699698|gb|EDS16277.1| hypothetical protein BACSTE_00948 [Bacteroides stercoris ATCC 43183] Length = 308 Score = 41.6 bits (96), Expect = 0.039, Method: Compositional matrix adjust. Identities = 21/75 (28%), Positives = 39/75 (52%), Gaps = 2/75 (2%) Query: 92 TEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLD 151 T W R+ + I++ + E++ ++PV V ++EYV IA + F+N LD Sbjct: 234 TRNWDLDRVAFMDVVIMQCALAEILSFPNIPVSVSLNEYVDIAKVYSTAKSGSFVNGTLD 293 Query: 152 KVSRKEEIKRSGCVS 166 + + E+K+ G +S Sbjct: 294 GIVK--ELKKEGKLS 306 >gi|325680270|ref|ZP_08159830.1| ribosomal RNA small subunit methyltransferase B [Ruminococcus albus 8] gi|324107979|gb|EGC02235.1| ribosomal RNA small subunit methyltransferase B [Ruminococcus albus 8] Length = 429 Score = 41.6 bits (96), Expect = 0.039, Method: Compositional matrix adjust. Identities = 24/94 (25%), Positives = 49/94 (52%), Gaps = 2/94 (2%) Query: 65 DLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVE 124 D ++ + +GV++R+ +D +I+ K ++L+ L +ILR+G+ +L SVP Sbjct: 39 DKKFISALFYGVLERRLTLDAMIAEL--SKNPKNKLNNTLRNILRSGLYQLKYMDSVPDN 96 Query: 125 VIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEE 158 + E V +A F+N +L + R+++ Sbjct: 97 AAVDESVEMAKKLRNPASAGFVNGLLREFIRRDK 130 >gi|312195541|ref|YP_004015602.1| NusB antitermination factor [Frankia sp. EuI1c] gi|311226877|gb|ADP79732.1| NusB antitermination factor [Frankia sp. EuI1c] Length = 135 Score = 41.6 bits (96), Expect = 0.041, Method: Compositional matrix adjust. Identities = 35/135 (25%), Positives = 56/135 (41%), Gaps = 14/135 (10%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 R +R A+ LY+ D+ S EI++ D ++ E+ ++ Sbjct: 4 RSKSRKRALDILYEADLRSTSPLEILAARSVQN---DPPVN----------EYTSGLVRD 50 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135 V + ID I E W+ R+ + +ILR VLE++ VP V I E V +A Sbjct: 51 VTEHLGRIDGFIGEH-AEGWTLERMPAVDRNILRIAVLEMMWRDDVPDRVAIDEAVELAK 109 Query: 136 DFFYGDEPKFINAVL 150 P F+N +L Sbjct: 110 SVSTDRSPAFVNGLL 124 >gi|189219673|ref|YP_001940314.1| transcription termination protein NusB [Methylacidiphilum infernorum V4] gi|259514863|sp|B3DWQ3|NUSB_METI4 RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|189186531|gb|ACD83716.1| Transcription termination protein NusB [Methylacidiphilum infernorum V4] Length = 143 Score = 41.6 bits (96), Expect = 0.041, Method: Compositional matrix adjust. Identities = 41/140 (29%), Positives = 68/140 (48%), Gaps = 14/140 (10%) Query: 15 RRGIARLAAVQALYQIDI-IGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVII 73 RR I L VQ LYQ ++ G ++ ++ + F + D E+V +W + I Sbjct: 4 RRKIRELI-VQFLYQWEMNKGVGLDNMLLDF--WDFSPLDQKDKEAVE-----QWLKEI- 54 Query: 74 HGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCI 133 + K+ I+ I+S + + WS RL + IL G+ E++ +P V I+E V I Sbjct: 55 ---AEHKEAIEEKINSYV-KNWSLDRLAPVDKCILILGIYEILYRKDIPPAVSINESVEI 110 Query: 134 AHDFFYGDEPKFINAVLDKV 153 A + + KF+N +LD V Sbjct: 111 AKKYSTEESGKFVNGILDSV 130 >gi|302392192|ref|YP_003828012.1| sun protein [Acetohalobium arabaticum DSM 5501] gi|302204269|gb|ADL12947.1| sun protein [Acetohalobium arabaticum DSM 5501] Length = 448 Score = 41.6 bits (96), Expect = 0.042, Method: Compositional matrix adjust. Identities = 31/139 (22%), Positives = 65/139 (46%), Gaps = 17/139 (12%) Query: 19 ARLAAVQALYQIDIIGCSTTEIISE-YETYRFC-ADTELDVESVYLHVDLEWFRVIIHGV 76 R AV+A+Y+++ G + I++ ++ Y D L E +I+G Sbjct: 5 GRQTAVEAVYRVNEEGAYSNLILNHLFKKYNLADQDRGLATE-------------LIYGS 51 Query: 77 MDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHD 136 + + H+D +++ + +++D +ILR G+ ++ S+P V +E V +A D Sbjct: 52 LRMRNHLDWILNQFADRR--VNKMDKWTRNILRLGLYQIRFLDSIPDAVACNETVELAKD 109 Query: 137 FFYGDEPKFINAVLDKVSR 155 + + F+N +L + R Sbjct: 110 YQHSGAAGFVNGILRSILR 128 >gi|309389162|gb|ADO77042.1| NusB antitermination factor [Halanaerobium praevalens DSM 2228] Length = 133 Score = 41.6 bits (96), Expect = 0.042, Method: Compositional matrix adjust. Identities = 38/135 (28%), Positives = 60/135 (44%), Gaps = 11/135 (8%) Query: 20 RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79 R+ A+Q LY +DI E S+ F A+ + E +Y+ I+ G++ Sbjct: 10 RIWALQILYGLDIRKKLALEH-SKKSYENFMAEKGVLSEDLYV-------AEILEGIILE 61 Query: 80 KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139 + +D I W R+ I +ILR E+ H +P +V I+E V IA + Sbjct: 62 LELLDAQIDQYAI-NWDIERMPAIDRNILRIAAYEI--QHDIPAKVAINEAVKIAKKYAD 118 Query: 140 GDEPKFINAVLDKVS 154 P FIN +L K + Sbjct: 119 DSSPSFINGILSKFA 133 >gi|295090868|emb|CBK76975.1| transcription antitermination factor NusB [Clostridium cf. saccharolyticum K10] Length = 147 Score = 41.2 bits (95), Expect = 0.043, Method: Compositional matrix adjust. Identities = 27/100 (27%), Positives = 49/100 (49%), Gaps = 7/100 (7%) Query: 54 ELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVL 113 ELDV D + + + V+++ +D I+ + W+ R+ + +ILR + Sbjct: 54 ELDV------YDSGYVKNKVEKVLEKLTELDTAINET-AKGWTTRRMGKVELTILRLALF 106 Query: 114 ELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKV 153 E+ VP +V I+E V +A F + P F+N +L K+ Sbjct: 107 EIRYDEEVPDKVAINEAVELAKKFGGDESPAFVNGILAKL 146 >gi|294783685|ref|ZP_06749009.1| transcription antitermination factor NusB [Fusobacterium sp. 1_1_41FAA] gi|294480563|gb|EFG28340.1| transcription antitermination factor NusB [Fusobacterium sp. 1_1_41FAA] Length = 152 Score = 41.2 bits (95), Expect = 0.043, Method: Compositional matrix adjust. Identities = 28/128 (21%), Positives = 62/128 (48%), Gaps = 8/128 (6%) Query: 32 IIGCSTTEIISEY--ETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISS 89 + G TE SE + + D S L++ + + G+ + +I I + Sbjct: 27 VFGVEATESTSEELEKAFDIYLSNNEDFVSTLSENQLKFLQTSVKGISENYDNIKDTIKT 86 Query: 90 CLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEP--KFIN 147 T+ W++ R+ ++ ++L E ++ ++ P+EV+ +E V +A + YG+E +F+N Sbjct: 87 N-TQNWAYERIGLVERTLLIIATYEFLKANT-PIEVVANETVELAKE--YGNEKSYEFVN 142 Query: 148 AVLDKVSR 155 +L + + Sbjct: 143 GILANIGK 150 >gi|217967431|ref|YP_002352937.1| NusB antitermination factor [Dictyoglomus turgidum DSM 6724] gi|254772636|sp|B8E246|NUSB_DICTD RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|217336530|gb|ACK42323.1| NusB antitermination factor [Dictyoglomus turgidum DSM 6724] Length = 144 Score = 41.2 bits (95), Expect = 0.044, Method: Compositional matrix adjust. Identities = 24/88 (27%), Positives = 44/88 (50%), Gaps = 2/88 (2%) Query: 75 GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134 G + K D +IS ++ W R+ I +ILR + E+ +P V ++E V +A Sbjct: 46 GALYYKDLADEIISK-FSKNWKLERIGTIEKNILRMAIAEMFTFSDIPQGVTVNEAVELA 104 Query: 135 HDFFYGDEPKFINAVLDKVSRK-EEIKR 161 + + +FIN +L + R +E+K+ Sbjct: 105 KKYVSPEAGRFINGILRNIVRNWDEVKK 132 >gi|153953852|ref|YP_001394617.1| transcription antitermination protein NusB [Clostridium kluyveri DSM 555] gi|219854467|ref|YP_002471589.1| hypothetical protein CKR_1124 [Clostridium kluyveri NBRC 12016] gi|189035884|sp|A5N7I8|NUSB_CLOK5 RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|254772627|sp|B9E100|NUSB_CLOK1 RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|146346733|gb|EDK33269.1| NusB [Clostridium kluyveri DSM 555] gi|219568191|dbj|BAH06175.1| hypothetical protein [Clostridium kluyveri NBRC 12016] Length = 156 Score = 41.2 bits (95), Expect = 0.044, Method: Compositional matrix adjust. Identities = 23/99 (23%), Positives = 50/99 (50%), Gaps = 1/99 (1%) Query: 63 HVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVP 122 ++D+++ ++ G+ + +++ I L W +RL + +IL+ E + +P Sbjct: 59 NIDIDYVVRVLRGIEKNEDMLNIEIEKYLRN-WKLNRLSKVDSAILKICTYEFLHEDDIP 117 Query: 123 VEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKR 161 +V I+E + +A + FIN VL + + E+IK+ Sbjct: 118 EKVSINEAIELAKKYSSEKSASFINGVLGNMIKDEKIKK 156 >gi|89890544|ref|ZP_01202054.1| putative antitermination protein NusB [Flavobacteria bacterium BBFL7] gi|89517459|gb|EAS20116.1| putative antitermination protein NusB [Flavobacteria bacterium BBFL7] Length = 312 Score = 41.2 bits (95), Expect = 0.044, Method: Compositional matrix adjust. Identities = 22/76 (28%), Positives = 41/76 (53%), Gaps = 4/76 (5%) Query: 92 TEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLD 151 T W R+ I ++ E ++ +S+PV+V ++EY+ I+ D+ FIN +LD Sbjct: 233 TPNWEQDRIAQIDLVLIMMAQCEFLKFNSIPVKVSLNEYLEISKDYSTPKSSFFINGILD 292 Query: 152 KVSRKEE----IKRSG 163 +S++ E + +SG Sbjct: 293 NLSKEYEKEGILNKSG 308 >gi|213691632|ref|YP_002322218.1| NusB antitermination factor [Bifidobacterium longum subsp. infantis ATCC 15697] gi|254772616|sp|B7GPW0|NUSB_BIFLI RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|213523093|gb|ACJ51840.1| NusB antitermination factor [Bifidobacterium longum subsp. infantis ATCC 15697] gi|320457719|dbj|BAJ68340.1| transcription antitermination factor NusB [Bifidobacterium longum subsp. infantis ATCC 15697] Length = 187 Score = 41.2 bits (95), Expect = 0.045, Method: Compositional matrix adjust. Identities = 24/82 (29%), Positives = 41/82 (50%), Gaps = 1/82 (1%) Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131 I+ GV + ++ ID+ + T W R+ ++ +ILR E++ VP +V I E + Sbjct: 48 IVKGVAEHRRQIDMTLDEHST-GWKVRRMGVVDRNILRIAAWEILFNDDVPDKVAIDEAL 106 Query: 132 CIAHDFFYGDEPKFINAVLDKV 153 +A D P FI+ +L V Sbjct: 107 ALAKTLCDDDSPAFIHGLLSAV 128 >gi|326803320|ref|YP_004321138.1| transcription antitermination factor NusB [Aerococcus urinae ACS-120-V-Col10a] gi|326650660|gb|AEA00843.1| transcription antitermination factor NusB [Aerococcus urinae ACS-120-V-Col10a] Length = 194 Score = 41.2 bits (95), Expect = 0.045, Method: Compositional matrix adjust. Identities = 25/90 (27%), Positives = 47/90 (52%), Gaps = 6/90 (6%) Query: 68 WFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELI--ECHSVPVEV 125 +++ ++ + ++ +D I + KWS +RL+ + +ILR G E++ + VP V Sbjct: 94 YYQELLDRIASHQESVDQAIEDHIQGKWSLNRLEAMNLAILRVGAYEILYGDHDRVPGVV 153 Query: 126 IISEYVCIAHDFFYGDEP--KFINAVLDKV 153 + E + +A Y DE +FIN VL + Sbjct: 154 AVDEAIHLAR--RYSDEASRRFINGVLSSI 181 >gi|296454538|ref|YP_003661681.1| NusB antitermination factor [Bifidobacterium longum subsp. longum JDM301] gi|296183970|gb|ADH00852.1| NusB antitermination factor [Bifidobacterium longum subsp. longum JDM301] Length = 187 Score = 41.2 bits (95), Expect = 0.045, Method: Compositional matrix adjust. Identities = 24/82 (29%), Positives = 41/82 (50%), Gaps = 1/82 (1%) Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131 I+ GV + ++ ID+ + T W R+ ++ +ILR E++ VP +V I E + Sbjct: 48 IVKGVAEHRRQIDMTLDEHST-GWKVRRMGVVDRNILRIAAWEILFNDDVPDKVAIDEAL 106 Query: 132 CIAHDFFYGDEPKFINAVLDKV 153 +A D P FI+ +L V Sbjct: 107 ALAKTLCDDDSPAFIHGLLSAV 128 >gi|308234826|ref|ZP_07665563.1| transcription antitermination factor NusB [Gardnerella vaginalis ATCC 14018] gi|311114640|ref|YP_003985861.1| transcription antitermination factor NusB [Gardnerella vaginalis ATCC 14019] gi|310946134|gb|ADP38838.1| transcription antitermination factor NusB [Gardnerella vaginalis ATCC 14019] Length = 176 Score = 41.2 bits (95), Expect = 0.047, Method: Compositional matrix adjust. Identities = 26/82 (31%), Positives = 42/82 (51%), Gaps = 1/82 (1%) Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131 II GV +R+ ID ++ T W R+ +I +ILR V E++ VP +V I E + Sbjct: 48 IIRGVGERRNRIDKTLNRYST-GWKVGRMAVIDRNILRIAVWEILLNDEVPDKVAIDEAI 106 Query: 132 CIAHDFFYGDEPKFINAVLDKV 153 +A + D FI+ +L + Sbjct: 107 SLAKMYSDDDAIAFIHGLLSAI 128 >gi|327405408|ref|YP_004346246.1| NusB antitermination factor [Fluviicola taffensis DSM 16823] gi|327320916|gb|AEA45408.1| NusB antitermination factor [Fluviicola taffensis DSM 16823] Length = 315 Score = 41.2 bits (95), Expect = 0.048, Method: Compositional matrix adjust. Identities = 24/73 (32%), Positives = 41/73 (56%), Gaps = 6/73 (8%) Query: 84 DLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEP 143 +LL+ LT+ W R+ + +L+ + EL +++P +V ++EY+ I+ FY P Sbjct: 227 NLLLIDELTDNWELERIAKMDILLLKMAITELQVFNNIPKKVTLNEYIEISK--FYS-TP 283 Query: 144 K---FINAVLDKV 153 K FIN +LDK Sbjct: 284 KSHGFINGILDKA 296 >gi|157163972|ref|YP_001466235.1| transcription antitermination protein NusB [Campylobacter concisus 13826] gi|166215673|sp|A7ZBS7|NUSB_CAMC1 RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|112801548|gb|EAT98892.1| transcription antitermination factor NusB [Campylobacter concisus 13826] Length = 131 Score = 41.2 bits (95), Expect = 0.049, Method: Compositional matrix adjust. Identities = 25/79 (31%), Positives = 42/79 (53%), Gaps = 2/79 (2%) Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135 V+ K+ +D ++ L + FS++ +ILR G+ E+ + VII+E + +A Sbjct: 52 VLANKEKLDEILKPHLKD-GDFSKVGATELAILRLGLYEM-KFSQTDKAVIINEAIELAK 109 Query: 136 DFFYGDEPKFINAVLDKVS 154 + PKFIN VLDK+ Sbjct: 110 ELGSDQAPKFINGVLDKIK 128 >gi|17545430|ref|NP_518832.1| transcription antitermination protein NusB [Ralstonia solanacearum GMI1000] gi|17427722|emb|CAD14241.1| probable n utilization substance b homolog (protein nusb). transcription regulator [Ralstonia solanacearum GMI1000] Length = 161 Score = 41.2 bits (95), Expect = 0.049, Method: Compositional matrix adjust. Identities = 41/162 (25%), Positives = 71/162 (43%), Gaps = 32/162 (19%) Query: 4 QDN-----KKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVE 58 QDN K K + RR AR A+Q LYQ ++ + ++ + L Sbjct: 9 QDNSPAKPKAPPKSARRR--ARELALQGLYQW-LLNRNDPGVV----------EAHLHDA 55 Query: 59 SVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWS------FSRLDMILCSILRAGV 112 + D F ++HG + + + LTE ++ + L + + L G Sbjct: 56 QGFNKADRAHFDALLHGAIREE--------ATLTESFTPFLDRPVAELSPVERAALLVGA 107 Query: 113 LELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVS 154 EL+ C +P +V+I+E V +A F + K++N VLDK++ Sbjct: 108 YELVHCVDIPYKVVINEAVELAKTFGGVEGYKYVNGVLDKLA 149 >gi|23296076|gb|AAN12293.1| transcription termination factor [Aquifex pyrophilus] Length = 144 Score = 41.2 bits (95), Expect = 0.051, Method: Compositional matrix adjust. Identities = 36/140 (25%), Positives = 59/140 (42%), Gaps = 11/140 (7%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 R AR A LY+ D+ G +EI E + + ++ Y E+ + ++ Sbjct: 4 RKSARDTAFLVLYRWDLRGDKPSEIFKE-----VVEEKNIQNKNTY-----EYAKKLVET 53 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135 ++ ID +I L + WS RL + + LR GV EL+ S + + + I Sbjct: 54 TVNNISEIDAIIEKHL-KGWSIDRLGYVERNALRLGVAELLFLKSQEPGRVFIDIIDIVK 112 Query: 136 DFFYGDEPKFINAVLDKVSR 155 F KF+N VL + R Sbjct: 113 KFTDEKAAKFVNGVLSAIYR 132 >gi|317481639|ref|ZP_07940674.1| transcription antitermination factor NusB [Bifidobacterium sp. 12_1_47BFAA] gi|322689608|ref|YP_004209342.1| transcription antitermination factor NusB [Bifidobacterium longum subsp. infantis 157F] gi|316916929|gb|EFV38316.1| transcription antitermination factor NusB [Bifidobacterium sp. 12_1_47BFAA] gi|320460944|dbj|BAJ71564.1| transcription antitermination factor NusB [Bifidobacterium longum subsp. infantis 157F] Length = 190 Score = 41.2 bits (95), Expect = 0.051, Method: Compositional matrix adjust. Identities = 24/82 (29%), Positives = 41/82 (50%), Gaps = 1/82 (1%) Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131 I+ GV + ++ ID+ + T W R+ ++ +ILR E++ VP +V I E + Sbjct: 48 IVKGVAEHRRQIDMTLDEHST-GWKVRRMGVVDRNILRIAAWEILFNDDVPDKVAIDEAL 106 Query: 132 CIAHDFFYGDEPKFINAVLDKV 153 +A D P FI+ +L V Sbjct: 107 ALAKTLCDDDSPAFIHGLLSAV 128 >gi|158313539|ref|YP_001506047.1| NusB antitermination factor [Frankia sp. EAN1pec] gi|158108944|gb|ABW11141.1| NusB antitermination factor [Frankia sp. EAN1pec] Length = 135 Score = 41.2 bits (95), Expect = 0.051, Method: Compositional matrix adjust. Identities = 25/89 (28%), Positives = 43/89 (48%), Gaps = 1/89 (1%) Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131 ++ GV+ ID I+ + W+ R+ + +ILR VLEL VP V+I E V Sbjct: 28 LVEGVVAHLAEIDAHIAR-FAQGWTLDRMPPVDRNILRIAVLELFWRSDVPDRVVIDEAV 86 Query: 132 CIAHDFFYGDEPKFINAVLDKVSRKEEIK 160 +A P F+N +L + +++ + Sbjct: 87 RLAKTISTERSPAFVNGLLASLLKEKPVP 115 >gi|327399588|ref|YP_004340457.1| NusB antitermination factor [Hippea maritima DSM 10411] gi|327182217|gb|AEA34398.1| NusB antitermination factor [Hippea maritima DSM 10411] Length = 133 Score = 41.2 bits (95), Expect = 0.052, Method: Compositional matrix adjust. Identities = 46/151 (30%), Positives = 74/151 (49%), Gaps = 30/151 (19%) Query: 12 LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELD-VESVYLHVDLEWFR 70 +S R+ AR AVQ +Y + E +E Y F +D V D + + Sbjct: 1 MSRRK--ARTVAVQYIY--------SKEFGNEDSPYAF-----MDFVGHPKKEDDKAFAK 45 Query: 71 VIIHGVMDRKQHIDLLISSCLTEKWSFSRLD---MILCSILRAGVLELI---ECHSVPVE 124 +I G + Q++D++ + L +K++ + D +I SILR G+ EL+ E H V Sbjct: 46 KLIDGTI---QNLDII--NNLIKKYASAGDDIMSLIDKSILRVGIYELLFLREAHPV--- 97 Query: 125 VIISEYVCIAHDFFYGDEPKFINAVLDKVSR 155 V+I+EYV IA + +NA+LDKV + Sbjct: 98 VVINEYVNIAKELSKESSKSLVNAILDKVYK 128 >gi|225569232|ref|ZP_03778257.1| hypothetical protein CLOHYLEM_05314 [Clostridium hylemonae DSM 15053] gi|225162031|gb|EEG74650.1| hypothetical protein CLOHYLEM_05314 [Clostridium hylemonae DSM 15053] Length = 434 Score = 41.2 bits (95), Expect = 0.052, Method: Compositional matrix adjust. Identities = 24/85 (28%), Positives = 44/85 (51%), Gaps = 2/85 (2%) Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131 +I+G ++ ID +I+ K +R+ ++ +I+R+GV +L SVP + +E V Sbjct: 50 VINGTLEHLIEIDYIINQF--SKVKVNRMKPVIGAIIRSGVYQLKYMDSVPDSAVCNEAV 107 Query: 132 CIAHDFFYGDEPKFINAVLDKVSRK 156 +A + F+N VL +SR Sbjct: 108 KLAEKRGFASLKAFVNGVLRNISRN 132 >gi|298490714|ref|YP_003720891.1| NusB antitermination factor ['Nostoc azollae' 0708] gi|298232632|gb|ADI63768.1| NusB antitermination factor ['Nostoc azollae' 0708] Length = 213 Score = 41.2 bits (95), Expect = 0.053, Method: Compositional matrix adjust. Identities = 30/92 (32%), Positives = 50/92 (54%), Gaps = 4/92 (4%) Query: 68 WFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVII 127 + + II V + + ID +IS L + W +RL I IL+ E+ + VP + I Sbjct: 123 YAKEIIITVNENRNVIDQIISDALVD-WQVTRLAQIDRDILQIAAAEM-KFMGVPASIAI 180 Query: 128 SEYVCIAHDFFYGDEP-KFINAVLDKVSRKEE 158 +E V +A + GDE +FIN VL +V+ +++ Sbjct: 181 NEAVELAK-RYSGDEGHRFINGVLRRVTEQKQ 211 >gi|19704937|ref|NP_602432.1| transcription antitermination protein NusB [Fusobacterium nucleatum subsp. nucleatum ATCC 25586] gi|296329192|ref|ZP_06871693.1| transcription antitermination factor NusB [Fusobacterium nucleatum subsp. nucleatum ATCC 23726] gi|22095941|sp|Q8RII1|NUSB_FUSNN RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|19712836|gb|AAL93731.1| N utilization substance protein B [Fusobacterium nucleatum subsp. nucleatum ATCC 25586] gi|296153548|gb|EFG94365.1| transcription antitermination factor NusB [Fusobacterium nucleatum subsp. nucleatum ATCC 23726] Length = 153 Score = 41.2 bits (95), Expect = 0.053, Method: Compositional matrix adjust. Identities = 24/92 (26%), Positives = 49/92 (53%), Gaps = 6/92 (6%) Query: 66 LEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEV 125 LE+ + I G+ +I +I T+ W++ R+ ++ ++L E I + P+EV Sbjct: 63 LEFLKSSIDGIAKNYDNIKDIIKKN-TQNWAYERIGVVERALLIVATYEFI-FKNAPIEV 120 Query: 126 IISEYVCIAHDFFYGDEP--KFINAVLDKVSR 155 I +E + +A + YG+E +F+N +L + + Sbjct: 121 IANEIIELAKE--YGNEKSYEFVNGILANIEK 150 >gi|309806415|ref|ZP_07700424.1| putative transcription antitermination protein NusB [Lactobacillus iners LactinV 03V1-b] gi|308167197|gb|EFO69367.1| putative transcription antitermination protein NusB [Lactobacillus iners LactinV 03V1-b] Length = 100 Score = 41.2 bits (95), Expect = 0.055, Method: Compositional matrix adjust. Identities = 22/79 (27%), Positives = 37/79 (46%) Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131 I+ GVM K ID ++ L + W+ RL+ I IL G+ E+ + ++E + Sbjct: 16 ILQGVMKEKSSIDANLTKYLKKGWTLERLNKIDLVILEVGLFEIQNSKVIKPVSALNEAL 75 Query: 132 CIAHDFFYGDEPKFINAVL 150 + +F FIN +L Sbjct: 76 NMCDEFSSAKSKGFINGIL 94 >gi|284044527|ref|YP_003394867.1| NusB antitermination factor [Conexibacter woesei DSM 14684] gi|283948748|gb|ADB51492.1| NusB antitermination factor [Conexibacter woesei DSM 14684] Length = 133 Score = 41.2 bits (95), Expect = 0.055, Method: Compositional matrix adjust. Identities = 27/81 (33%), Positives = 37/81 (45%), Gaps = 7/81 (8%) Query: 83 IDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIIS------EYVCIAHD 136 D LIS E W+ R+ + SILR +LE++ VP E I E + A Sbjct: 40 FDALISRH-AEGWTLQRIAPLERSILRVSLLEMLHPGDVPAERPIPPEGAIDEAIETAKA 98 Query: 137 FFYGDEPKFINAVLDKVSRKE 157 + D P F+N VL + R E Sbjct: 99 YCGADAPGFVNGVLAAILRAE 119 >gi|251770860|gb|EES51447.1| transcription antitermination factor (NusB) [Leptospirillum ferrodiazotrophum] Length = 180 Score = 41.2 bits (95), Expect = 0.055, Method: Compositional matrix adjust. Identities = 24/75 (32%), Positives = 40/75 (53%), Gaps = 1/75 (1%) Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135 ++ RK ID +I L WS RL + +ILR G+ E++ ++P V + E + +AH Sbjct: 66 ILFRKPEIDAVIEE-LARGWSLPRLTRVDRNILRIGLCEILFDPAMPFRVSVHEALDLAH 124 Query: 136 DFFYGDEPKFINAVL 150 F + F+N +L Sbjct: 125 RFSDPEAVSFLNGIL 139 >gi|22095947|sp|Q8Y1H9|NUSB_RALSO RecName: Full=N utilization substance protein B homolog; Short=Protein nusB Length = 155 Score = 40.8 bits (94), Expect = 0.057, Method: Compositional matrix adjust. Identities = 41/162 (25%), Positives = 71/162 (43%), Gaps = 32/162 (19%) Query: 4 QDN-----KKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVE 58 QDN K K + RR AR A+Q LYQ ++ + ++ + L Sbjct: 3 QDNSPAKPKAPPKSARRR--ARELALQGLYQW-LLNRNDPGVV----------EAHLHDA 49 Query: 59 SVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWS------FSRLDMILCSILRAGV 112 + D F ++HG + + + LTE ++ + L + + L G Sbjct: 50 QGFNKADRAHFDALLHGAIREE--------ATLTESFTPFLDRPVAELSPVERAALLVGA 101 Query: 113 LELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVS 154 EL+ C +P +V+I+E V +A F + K++N VLDK++ Sbjct: 102 YELVHCVDIPYKVVINEAVELAKTFGGVEGYKYVNGVLDKLA 143 >gi|329955547|ref|ZP_08296455.1| transcription antitermination factor NusB [Bacteroides clarus YIT 12056] gi|328525950|gb|EGF52974.1| transcription antitermination factor NusB [Bacteroides clarus YIT 12056] Length = 308 Score = 40.8 bits (94), Expect = 0.058, Method: Compositional matrix adjust. Identities = 21/75 (28%), Positives = 39/75 (52%), Gaps = 2/75 (2%) Query: 92 TEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLD 151 T W R+ + I++ + E++ ++PV V ++EYV IA + F+N LD Sbjct: 234 TRNWDLDRVAFMDVVIMQCALAEILSFPNIPVSVSLNEYVDIAKVYSTTKSGSFVNGTLD 293 Query: 152 KVSRKEEIKRSGCVS 166 + + E+K+ G +S Sbjct: 294 GIVK--ELKKEGKLS 306 >gi|288918217|ref|ZP_06412572.1| NusB antitermination factor [Frankia sp. EUN1f] gi|288350387|gb|EFC84609.1| NusB antitermination factor [Frankia sp. EUN1f] Length = 146 Score = 40.8 bits (94), Expect = 0.059, Method: Compositional matrix adjust. Identities = 30/97 (30%), Positives = 46/97 (47%), Gaps = 2/97 (2%) Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131 ++ GV+ ID I+S + W+ R+ + +ILR VLEL VP V+I E V Sbjct: 28 LVEGVVAHLGDIDRHIASH-AQGWAIDRMPPVDRNILRIAVLELFWRTDVPDGVVIDEAV 86 Query: 132 CIAHDFFYGDEPKFINAVLDK-VSRKEEIKRSGCVSA 167 +A P F+N +L + K ++ R G A Sbjct: 87 RLAKTISTERSPAFVNGLLASLLQEKPQLLREGPEPA 123 >gi|302824271|ref|XP_002993780.1| hypothetical protein SELMODRAFT_137586 [Selaginella moellendorffii] gi|300138376|gb|EFJ05146.1| hypothetical protein SELMODRAFT_137586 [Selaginella moellendorffii] Length = 476 Score = 40.8 bits (94), Expect = 0.060, Method: Compositional matrix adjust. Identities = 25/87 (28%), Positives = 48/87 (55%), Gaps = 2/87 (2%) Query: 73 IHGVMDRKQHIDLLISSCL-TEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131 + G++ K+++D +IS+ ++ F R++ IL +LR G EL++ VP +++E V Sbjct: 68 VAGIVRWKKYLDYVISNVYDKDQNEFERMEPILKQVLRLGAYELLKLE-VPAYAVVNEAV 126 Query: 132 CIAHDFFYGDEPKFINAVLDKVSRKEE 158 +A+ K NA+L V+ +E Sbjct: 127 KLANAASRAGAGKLANALLRAVASHKE 153 >gi|325265401|ref|ZP_08132125.1| transcription antitermination factor NusB [Clostridium sp. D5] gi|324029402|gb|EGB90693.1| transcription antitermination factor NusB [Clostridium sp. D5] Length = 132 Score = 40.8 bits (94), Expect = 0.061, Method: Compositional matrix adjust. Identities = 25/90 (27%), Positives = 43/90 (47%), Gaps = 1/90 (1%) Query: 65 DLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVE 124 D E+ ++ + ID +++ T W +R+ + +ILR E+ VP Sbjct: 43 DKEYITKKFEAIVKKVPEIDAILNEKTT-GWKTTRMSKVDLTILRLATYEMKWDEDVPEG 101 Query: 125 VIISEYVCIAHDFFYGDEPKFINAVLDKVS 154 V I+E V +A F + P F+N VL K++ Sbjct: 102 VAINEAVELAKRFSGEEGPSFVNGVLAKLT 131 >gi|332829206|gb|EGK01870.1| hypothetical protein HMPREF9455_02018 [Dysgonomonas gadei ATCC BAA-286] Length = 308 Score = 40.8 bits (94), Expect = 0.062, Method: Compositional matrix adjust. Identities = 17/60 (28%), Positives = 33/60 (55%) Query: 92 TEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLD 151 T+ W R+ ++ I++ + E++ S+P+ V ++EY+ IA + FIN +LD Sbjct: 234 TKNWESERIALMDMVIMQIAIGEIVSFPSIPISVTLNEYIDIAKSYSTAKSASFINGILD 293 >gi|315924276|ref|ZP_07920500.1| N utilization substance protein B [Pseudoramibacter alactolyticus ATCC 23263] gi|315622437|gb|EFV02394.1| N utilization substance protein B [Pseudoramibacter alactolyticus ATCC 23263] Length = 158 Score = 40.8 bits (94), Expect = 0.062, Method: Compositional matrix adjust. Identities = 25/80 (31%), Positives = 41/80 (51%), Gaps = 3/80 (3%) Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECH-SVPVEVIISEYVCIA 134 V+D ID I+ L + W RL +ILR E+ C+ P+E+ I+E V +A Sbjct: 63 VVDHLAAIDERIAQYLRKDWHMDRLPGAEKAILRVATAEM--CYLDQPLEIAINEAVELA 120 Query: 135 HDFFYGDEPKFINAVLDKVS 154 + D P++IN +L+ + Sbjct: 121 KRYCDEDAPRYINGILNNLG 140 >gi|167949504|ref|ZP_02536578.1| transcription antitermination protein NusB [Endoriftia persephone 'Hot96_1+Hot96_2'] Length = 182 Score = 40.8 bits (94), Expect = 0.062, Method: Compositional matrix adjust. Identities = 30/109 (27%), Positives = 53/109 (48%), Gaps = 13/109 (11%) Query: 12 LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71 +S +R AR AVQA+YQ + G I YE +F + +L ++ +F+ Sbjct: 1 MSKKRSQARRHAVQAIYQWQMAGQDLAAI---YE--QFLGEQDLS------QFEVPYFKD 49 Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHS 120 ++HGV + Q +D L+ L + +D + ++LR GV ++ H Sbjct: 50 LLHGVPNNLQELDGLLKPALDR--AIESVDPVERAVLRLGVYDVETPHG 96 >gi|153810477|ref|ZP_01963145.1| hypothetical protein RUMOBE_00858 [Ruminococcus obeum ATCC 29174] gi|149833656|gb|EDM88737.1| hypothetical protein RUMOBE_00858 [Ruminococcus obeum ATCC 29174] Length = 180 Score = 40.8 bits (94), Expect = 0.062, Method: Compositional matrix adjust. Identities = 23/76 (30%), Positives = 40/76 (52%), Gaps = 2/76 (2%) Query: 81 QHIDLL--ISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFF 138 +H+D + I + + W +R++ + + LR V E+ VPV V I+E V +A F Sbjct: 56 EHLDEIDQILNEYSRGWKTTRMNRVDLTALRLAVYEMKMDEEVPVGVAINEAVELAKLFG 115 Query: 139 YGDEPKFINAVLDKVS 154 D F+N +L K++ Sbjct: 116 GEDSGSFVNGILGKIA 131 >gi|218129920|ref|ZP_03458724.1| hypothetical protein BACEGG_01503 [Bacteroides eggerthii DSM 20697] gi|317476859|ref|ZP_07936102.1| transcription antitermination factor NusB [Bacteroides eggerthii 1_2_48FAA] gi|217988030|gb|EEC54355.1| hypothetical protein BACEGG_01503 [Bacteroides eggerthii DSM 20697] gi|316907034|gb|EFV28745.1| transcription antitermination factor NusB [Bacteroides eggerthii 1_2_48FAA] Length = 308 Score = 40.8 bits (94), Expect = 0.063, Method: Compositional matrix adjust. Identities = 21/75 (28%), Positives = 39/75 (52%), Gaps = 2/75 (2%) Query: 92 TEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLD 151 T W R+ + I++ + E++ ++PV V ++EYV IA + F+N LD Sbjct: 234 TRNWDLDRVAFMDVVIMQCALAEILSFPNIPVSVSLNEYVDIAKVYSTTKSGSFVNGTLD 293 Query: 152 KVSRKEEIKRSGCVS 166 + + E+K+ G +S Sbjct: 294 GIVK--ELKKEGKLS 306 >gi|229815218|ref|ZP_04445554.1| hypothetical protein COLINT_02264 [Collinsella intestinalis DSM 13280] gi|229809228|gb|EEP44994.1| hypothetical protein COLINT_02264 [Collinsella intestinalis DSM 13280] Length = 216 Score = 40.8 bits (94), Expect = 0.064, Method: Compositional matrix adjust. Identities = 36/148 (24%), Positives = 66/148 (44%), Gaps = 16/148 (10%) Query: 10 LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF 69 LK++ R +AR A+Q L+Q ++ S ++++ T +E Sbjct: 4 LKVNRGRTLARSQALQILFQSEMRKVSVEDVLAGDYTLSKGPLAPYAIE----------- 52 Query: 70 RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELI--ECHSVPVEVII 127 I GV + ID + + ++ W+ R+ ++LRA V EL ++ V+I Sbjct: 53 --IARGVSANRDRIDSALRA-VSANWTLERMPGADRNLLRAAVYELYFQVADTLDAAVVI 109 Query: 128 SEYVCIAHDFFYGDEPKFINAVLDKVSR 155 +E V IA + + F+N VL ++ R Sbjct: 110 NEAVEIAKAYGTDESAGFVNGVLGRIVR 137 >gi|163787968|ref|ZP_02182414.1| putative N utilization substance protein [Flavobacteriales bacterium ALC-1] gi|159876288|gb|EDP70346.1| putative N utilization substance protein [Flavobacteriales bacterium ALC-1] Length = 303 Score = 40.8 bits (94), Expect = 0.065, Method: Compositional matrix adjust. Identities = 23/72 (31%), Positives = 37/72 (51%) Query: 89 SCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINA 148 S T W RL + +L+ + E + S+P +V I+EY+ IA + FIN Sbjct: 221 SAKTTNWDSERLASLDGVLLKMALCEFQKFSSIPYKVTINEYLEIAKAYSTPKSSLFING 280 Query: 149 VLDKVSRKEEIK 160 +LDKV ++ + K Sbjct: 281 ILDKVVKEYQSK 292 >gi|33242357|ref|NP_877298.1| transcription antitermination protein NusB [Chlamydophila pneumoniae TW-183] gi|33236868|gb|AAP98955.1| hypothetical protein CpB1026 [Chlamydophila pneumoniae TW-183] Length = 131 Score = 40.8 bits (94), Expect = 0.067, Method: Compositional matrix adjust. Identities = 21/79 (26%), Positives = 43/79 (54%), Gaps = 1/79 (1%) Query: 75 GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134 ++++ Q +DL+I + L K SF LD++ ++LR + E + ++I+E + + Sbjct: 41 SILEKSQELDLIIGNALKNK-SFDSLDLVEKNVLRLTLFEHFYSPPINKAILIAEAIRLV 99 Query: 135 HDFFYGDEPKFINAVLDKV 153 F Y + FI A+L+ + Sbjct: 100 KKFSYSEACPFIQAILNDI 118 >gi|315604186|ref|ZP_07879252.1| ribosomal RNA small subunit methyltransferase B [Actinomyces sp. oral taxon 180 str. F0310] gi|315313892|gb|EFU61943.1| ribosomal RNA small subunit methyltransferase B [Actinomyces sp. oral taxon 180 str. F0310] Length = 490 Score = 40.8 bits (94), Expect = 0.068, Method: Compositional matrix adjust. Identities = 27/97 (27%), Positives = 49/97 (50%), Gaps = 3/97 (3%) Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131 ++HG + +D +I+ + S S+LD + +LR G +L++ VP +S V Sbjct: 65 LVHGTLRAMGWLDWVIARHVDR--SLSQLDPRVLVLLRVGAHQLLDMR-VPDHAAVSATV 121 Query: 132 CIAHDFFYGDEPKFINAVLDKVSRKEEIKRSGCVSAI 168 +A + +FINAVL ++R+ +R + AI Sbjct: 122 DVAREHLTDGPVRFINAVLRSITREGPGEREAALEAI 158 >gi|53804263|ref|YP_114097.1| N utilization substance protein B [Methylococcus capsulatus str. Bath] gi|81681940|sp|Q607V0|NUSB_METCA RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|53758024|gb|AAU92315.1| N utilization substance protein B [Methylococcus capsulatus str. Bath] Length = 198 Score = 40.8 bits (94), Expect = 0.068, Method: Compositional matrix adjust. Identities = 23/91 (25%), Positives = 47/91 (51%), Gaps = 2/91 (2%) Query: 64 VDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPV 123 V + +F+ ++HGV + +D ++ L +D + +ILR G E + P Sbjct: 96 VQVGYFKELLHGVANNLALLDAALAKYLDR--PIDEVDPVERAILRIGCYEFMRRPETPY 153 Query: 124 EVIISEYVCIAHDFFYGDEPKFINAVLDKVS 154 VI++E + +A +F +++N +LD+V+ Sbjct: 154 RVILNEAINLAKEFGAAQSYRYVNGILDRVA 184 >gi|305664845|ref|YP_003861132.1| putative N utilization substance protein [Maribacter sp. HTCC2170] gi|88707967|gb|EAR00206.1| putative N utilization substance protein [Maribacter sp. HTCC2170] Length = 304 Score = 40.8 bits (94), Expect = 0.068, Method: Compositional matrix adjust. Identities = 23/77 (29%), Positives = 40/77 (51%), Gaps = 2/77 (2%) Query: 92 TEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLD 151 T W R+ I +L+ + EL+ S+P +V I+E++ IA ++ FIN +LD Sbjct: 225 TPNWDKDRIADIDAILLKMAICELLNFPSIPEKVTINEFLEIAKEYSTPKSSIFINGILD 284 Query: 152 KVSRKEEIKRSGCVSAI 168 K+ + E K G + + Sbjct: 285 KLVK--EYKTEGKLKKV 299 >gi|332293207|ref|YP_004431816.1| NusB antitermination factor [Krokinobacter diaphorus 4H-3-7-5] gi|332171293|gb|AEE20548.1| NusB antitermination factor [Krokinobacter diaphorus 4H-3-7-5] Length = 314 Score = 40.8 bits (94), Expect = 0.068, Method: Compositional matrix adjust. Identities = 21/76 (27%), Positives = 42/76 (55%), Gaps = 4/76 (5%) Query: 92 TEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLD 151 T W R+ + +++ + E ++ ++PV+V I+EY+ IA ++ FIN +LD Sbjct: 235 TPNWDKERIADVDMVLIKMALCEFLKFPTIPVKVTINEYLEIAKEYSTPKSSIFINGILD 294 Query: 152 KVSRKEE----IKRSG 163 K+ ++ E +K+ G Sbjct: 295 KLVKQYESEKRLKKEG 310 >gi|118595243|ref|ZP_01552590.1| transcription antitermination protein NusB [Methylophilales bacterium HTCC2181] gi|118441021|gb|EAV47648.1| transcription antitermination protein NusB [Methylophilales bacterium HTCC2181] Length = 155 Score = 40.8 bits (94), Expect = 0.068, Method: Compositional matrix adjust. Identities = 34/125 (27%), Positives = 60/125 (48%), Gaps = 7/125 (5%) Query: 40 IISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSR 99 I+++++ + D D + ++ D + I+ GV + + I + L S+ Sbjct: 33 IVNQFDINQIKKDIREDPD--FVRSDESMYLSIVEGVHNNFDSLKEEIKTYLDR--SYDE 88 Query: 100 LDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKV---SRK 156 L I +IL + + EL VP V+I+E + +A F D KFIN +L+K +RK Sbjct: 89 LSPIELAILFSSLYELKFSLDVPYRVVINEAIEVAKSFGGVDGFKFINGILNKAAQHNRK 148 Query: 157 EEIKR 161 E+ R Sbjct: 149 NELSR 153 >gi|20807946|ref|NP_623117.1| tRNA and rRNA cytosine-C5-methylase [Thermoanaerobacter tengcongensis MB4] gi|254479565|ref|ZP_05092880.1| ribosomal RNA small subunit methyltransferase B [Carboxydibrachium pacificum DSM 12653] gi|20516516|gb|AAM24721.1| tRNA and rRNA cytosine-C5-methylases [Thermoanaerobacter tengcongensis MB4] gi|214034503|gb|EEB75262.1| ribosomal RNA small subunit methyltransferase B [Carboxydibrachium pacificum DSM 12653] Length = 443 Score = 40.8 bits (94), Expect = 0.068, Method: Compositional matrix adjust. Identities = 27/95 (28%), Positives = 47/95 (49%), Gaps = 5/95 (5%) Query: 64 VDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPV 123 VD + + +++GV++RK +D ++S + + D +L G+ +L+ VP Sbjct: 37 VDAAFVKELVYGVIERKYTLDFILSFFIKKSA-----DTKALLLLEMGLYQLLYMDKVPD 91 Query: 124 EVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEE 158 I+E V IA F F+NAVL R++E Sbjct: 92 YAAINETVEIAKKFLSKKGASFLNAVLRSYLREKE 126 >gi|237713467|ref|ZP_04543948.1| conserved hypothetical protein [Bacteroides sp. D1] gi|262407253|ref|ZP_06083801.1| conserved hypothetical protein [Bacteroides sp. 2_1_22] gi|294644674|ref|ZP_06722424.1| transcription antitermination factor NusB [Bacteroides ovatus SD CC 2a] gi|294809065|ref|ZP_06767787.1| transcription antitermination factor NusB [Bacteroides xylanisolvens SD CC 1b] gi|298482673|ref|ZP_07000857.1| NusB family protein [Bacteroides sp. D22] gi|229446449|gb|EEO52240.1| conserved hypothetical protein [Bacteroides sp. D1] gi|262354061|gb|EEZ03153.1| conserved hypothetical protein [Bacteroides sp. 2_1_22] gi|292640008|gb|EFF58276.1| transcription antitermination factor NusB [Bacteroides ovatus SD CC 2a] gi|294443790|gb|EFG12535.1| transcription antitermination factor NusB [Bacteroides xylanisolvens SD CC 1b] gi|295087143|emb|CBK68666.1| transcription antitermination factor NusB [Bacteroides xylanisolvens XB1A] gi|298271136|gb|EFI12713.1| NusB family protein [Bacteroides sp. D22] Length = 308 Score = 40.8 bits (94), Expect = 0.069, Method: Compositional matrix adjust. Identities = 20/75 (26%), Positives = 39/75 (52%), Gaps = 2/75 (2%) Query: 92 TEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLD 151 T+ W R+ + I++ + E++ ++PV V ++EYV IA + FIN LD Sbjct: 234 TKNWDLDRIAFMDVIIMQTALAEILSFPNIPVSVSLNEYVEIAKLYSTAKSGSFINGTLD 293 Query: 152 KVSRKEEIKRSGCVS 166 + ++K+ G ++ Sbjct: 294 GIVN--QLKKEGKLT 306 >gi|15618897|ref|NP_225183.1| transcription antitermination protein NusB [Chlamydophila pneumoniae CWL029] gi|15836520|ref|NP_301044.1| transcription antitermination protein NusB [Chlamydophila pneumoniae J138] gi|7387979|sp|Q9Z6S0|NUSB_CHLPN RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|4377317|gb|AAD19126.1| CT832 hypothetical protein [Chlamydophila pneumoniae CWL029] gi|8979362|dbj|BAA99196.1| CT832 hypothetical protein [Chlamydophila pneumoniae J138] Length = 160 Score = 40.8 bits (94), Expect = 0.069, Method: Compositional matrix adjust. Identities = 21/79 (26%), Positives = 43/79 (54%), Gaps = 1/79 (1%) Query: 75 GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134 ++++ Q +DL+I + L K SF LD++ ++LR + E + ++I+E + + Sbjct: 70 SILEKSQELDLIIGNALKNK-SFDSLDLVEKNVLRLTLFEHFYSPPINKAILIAEAIRLV 128 Query: 135 HDFFYGDEPKFINAVLDKV 153 F Y + FI A+L+ + Sbjct: 129 KKFSYSEACPFIQAILNDI 147 >gi|269302790|gb|ACZ32890.1| transcription antitermination factor NusB [Chlamydophila pneumoniae LPCoLN] Length = 160 Score = 40.8 bits (94), Expect = 0.070, Method: Compositional matrix adjust. Identities = 21/79 (26%), Positives = 44/79 (55%), Gaps = 1/79 (1%) Query: 75 GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134 ++++ Q +DL+I + L K SF LD++ ++LR + E + ++I+E + + Sbjct: 70 SILEKSQELDLIIGNALKNK-SFDSLDLVEKNVLRLTLFEHFYSPPINKAILIAEAIRLV 128 Query: 135 HDFFYGDEPKFINAVLDKV 153 F Y + FI+A+L+ + Sbjct: 129 KKFSYSEACPFIHAILNDI 147 >gi|268680366|ref|YP_003304797.1| transcription antitermination factor NusB [Sulfurospirillum deleyianum DSM 6946] gi|268618397|gb|ACZ12762.1| transcription antitermination factor NusB [Sulfurospirillum deleyianum DSM 6946] Length = 136 Score = 40.8 bits (94), Expect = 0.070, Method: Compositional matrix adjust. Identities = 29/87 (33%), Positives = 44/87 (50%), Gaps = 2/87 (2%) Query: 74 HGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCI 133 GV ID I+ L E W+ S + M+ +ILR G E++ + V+I+E + + Sbjct: 51 QGVKAHLSVIDEAINRHLKE-WNLSEIGMLERAILRLGGYEIL-YSELDNAVVINEAIEL 108 Query: 134 AHDFFYGDEPKFINAVLDKVSRKEEIK 160 A PKFIN VLD + ++ E K Sbjct: 109 AKKLCNETSPKFINGVLDAICKEGEAK 135 >gi|323435897|ref|ZP_01048839.2| NusB family protein [Dokdonia donghaensis MED134] gi|321496212|gb|EAQ40073.2| NusB family protein [Dokdonia donghaensis MED134] Length = 314 Score = 40.8 bits (94), Expect = 0.072, Method: Compositional matrix adjust. Identities = 20/76 (26%), Positives = 42/76 (55%), Gaps = 4/76 (5%) Query: 92 TEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLD 151 T W R+ + +++ + E ++ ++PV+V I+EY+ I+ ++ FIN +LD Sbjct: 235 TPNWDKERIADVDMVLIKMALCEFLKFPTIPVKVTINEYLEISKEYSTPKSSIFINGILD 294 Query: 152 KV----SRKEEIKRSG 163 K+ R++ +K+ G Sbjct: 295 KLVKQYEREKRLKKEG 310 >gi|293370796|ref|ZP_06617342.1| transcription antitermination factor NusB [Bacteroides ovatus SD CMC 3f] gi|292634156|gb|EFF52699.1| transcription antitermination factor NusB [Bacteroides ovatus SD CMC 3f] Length = 308 Score = 40.8 bits (94), Expect = 0.073, Method: Compositional matrix adjust. Identities = 20/75 (26%), Positives = 39/75 (52%), Gaps = 2/75 (2%) Query: 92 TEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLD 151 T+ W R+ + I++ + E++ ++PV V ++EYV IA + FIN LD Sbjct: 234 TKNWDLDRIAFMDVIIMQTALAEILSFPNIPVSVSLNEYVEIAKLYSTAKSGSFINGTLD 293 Query: 152 KVSRKEEIKRSGCVS 166 + ++K+ G ++ Sbjct: 294 GIVN--QLKKEGKLT 306 >gi|167766576|ref|ZP_02438629.1| hypothetical protein CLOSS21_01082 [Clostridium sp. SS2/1] gi|167711699|gb|EDS22278.1| hypothetical protein CLOSS21_01082 [Clostridium sp. SS2/1] Length = 167 Score = 40.4 bits (93), Expect = 0.074, Method: Compositional matrix adjust. Identities = 23/67 (34%), Positives = 32/67 (47%) Query: 89 SCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINA 148 S T W+ RL SILR E++ VP +V I+E V +A + FIN Sbjct: 96 SAHTNAWNLERLGKAELSILRLATYEILLDEQVPRKVAINEAVELAKKYCNEKAAPFING 155 Query: 149 VLDKVSR 155 VL K+ + Sbjct: 156 VLSKIGQ 162 >gi|160887367|ref|ZP_02068370.1| hypothetical protein BACOVA_05386 [Bacteroides ovatus ATCC 8483] gi|237722651|ref|ZP_04553132.1| conserved hypothetical protein [Bacteroides sp. 2_2_4] gi|299148943|ref|ZP_07042005.1| NusB family protein [Bacteroides sp. 3_1_23] gi|156107778|gb|EDO09523.1| hypothetical protein BACOVA_05386 [Bacteroides ovatus ATCC 8483] gi|229448461|gb|EEO54252.1| conserved hypothetical protein [Bacteroides sp. 2_2_4] gi|298513704|gb|EFI37591.1| NusB family protein [Bacteroides sp. 3_1_23] Length = 308 Score = 40.4 bits (93), Expect = 0.074, Method: Compositional matrix adjust. Identities = 20/75 (26%), Positives = 39/75 (52%), Gaps = 2/75 (2%) Query: 92 TEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLD 151 T+ W R+ + I++ + E++ ++PV V ++EYV IA + FIN LD Sbjct: 234 TKNWDLDRIAFMDVIIMQTALAEILSFPNIPVSVSLNEYVEIAKLYSTAKSGSFINGTLD 293 Query: 152 KVSRKEEIKRSGCVS 166 + ++K+ G ++ Sbjct: 294 GIVN--QLKKEGKLT 306 >gi|295108281|emb|CBL22234.1| transcription antitermination factor NusB [Ruminococcus obeum A2-162] Length = 171 Score = 40.4 bits (93), Expect = 0.075, Method: Compositional matrix adjust. Identities = 21/60 (35%), Positives = 32/60 (53%) Query: 95 WSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVS 154 W +R++ + + LR V E+ VPV V I+E V +A F D F+N VL K++ Sbjct: 72 WKTTRMNRVDLTALRLAVYEMKMDEDVPVGVAINEAVELAKLFGGEDSGSFVNGVLGKIA 131 >gi|218289636|ref|ZP_03493856.1| NusB antitermination factor [Alicyclobacillus acidocaldarius LAA1] gi|218240286|gb|EED07469.1| NusB antitermination factor [Alicyclobacillus acidocaldarius LAA1] Length = 165 Score = 40.4 bits (93), Expect = 0.076, Method: Compositional matrix adjust. Identities = 35/135 (25%), Positives = 61/135 (45%), Gaps = 10/135 (7%) Query: 19 ARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMD 78 AR A+QAL +D+ ++ S A+ LD + +++ ++ G Sbjct: 6 ARECALQALCVLDV----QRDLGSAEAIASVLAERGLDAGGDWAYIE-----ELVDGTRR 56 Query: 79 RKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFF 138 ID L++ + E+WS R+ + ++LR EL+ +P+ I E V IA F Sbjct: 57 HLGEIDELLARHM-ERWSPERIGRVERNVLRLATYELLFEPELPIASAIDEAVQIAKTFA 115 Query: 139 YGDEPKFINAVLDKV 153 +F+N VL K+ Sbjct: 116 TEQSGRFVNGVLAKL 130 >gi|16752038|ref|NP_445404.1| transcription antitermination protein NusB [Chlamydophila pneumoniae AR39] gi|7189778|gb|AAF38655.1| N utilization substance protein B, putative [Chlamydophila pneumoniae AR39] Length = 163 Score = 40.4 bits (93), Expect = 0.076, Method: Compositional matrix adjust. Identities = 23/81 (28%), Positives = 46/81 (56%), Gaps = 5/81 (6%) Query: 75 GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVE--VIISEYVC 132 ++++ Q +DL+I + L K SF LD++ ++LR + E +S P+ ++I+E + Sbjct: 73 SILEKSQELDLIIGNALKNK-SFDSLDLVEKNVLRLTLFE--HFYSPPINKAILIAEAIR 129 Query: 133 IAHDFFYGDEPKFINAVLDKV 153 + F Y + FI A+L+ + Sbjct: 130 LVKKFSYSEACPFIQAILNDI 150 >gi|317498987|ref|ZP_07957269.1| transcription antitermination factor NusB [Lachnospiraceae bacterium 5_1_63FAA] gi|316893736|gb|EFV15936.1| transcription antitermination factor NusB [Lachnospiraceae bacterium 5_1_63FAA] Length = 171 Score = 40.4 bits (93), Expect = 0.077, Method: Compositional matrix adjust. Identities = 23/67 (34%), Positives = 32/67 (47%) Query: 89 SCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINA 148 S T W+ RL SILR E++ VP +V I+E V +A + FIN Sbjct: 100 SAHTNAWNLERLGKAELSILRLATYEILLDEQVPRKVAINEAVELAKKYCNEKAAPFING 159 Query: 149 VLDKVSR 155 VL K+ + Sbjct: 160 VLSKIGQ 166 >gi|325680657|ref|ZP_08160195.1| transcription antitermination factor NusB [Ruminococcus albus 8] gi|324107437|gb|EGC01715.1| transcription antitermination factor NusB [Ruminococcus albus 8] Length = 137 Score = 40.4 bits (93), Expect = 0.077, Method: Compositional matrix adjust. Identities = 24/90 (26%), Positives = 49/90 (54%), Gaps = 3/90 (3%) Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131 ++ V D+++ +D +IS ++K + +R+ + ++LR + E + VPV V ISE V Sbjct: 48 LVRCVFDKQEELDSIISKY-SDKRALNRIPKVDLAVLRIAIYEALYDDKVPVNVAISEAV 106 Query: 132 CIAHDFFYGDEPKFINAVLDKVSRKEEIKR 161 + + + F+N +L S+ E+K+ Sbjct: 107 SLTEKYALEPDVSFVNGLLGAFSK--ELKK 134 >gi|260171339|ref|ZP_05757751.1| putative N utilization substance protein [Bacteroides sp. D2] gi|315919650|ref|ZP_07915890.1| conserved hypothetical protein [Bacteroides sp. D2] gi|313693525|gb|EFS30360.1| conserved hypothetical protein [Bacteroides sp. D2] Length = 308 Score = 40.4 bits (93), Expect = 0.077, Method: Compositional matrix adjust. Identities = 20/75 (26%), Positives = 39/75 (52%), Gaps = 2/75 (2%) Query: 92 TEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLD 151 T+ W R+ + I++ + E++ ++PV V ++EYV IA + FIN LD Sbjct: 234 TKNWDLDRIAFMDVIIMQTALAEILSFPNIPVSVSLNEYVEIAKLYSTAKSGSFINGTLD 293 Query: 152 KVSRKEEIKRSGCVS 166 + ++K+ G ++ Sbjct: 294 GIVN--QLKKEGKLT 306 >gi|160945199|ref|ZP_02092425.1| hypothetical protein FAEPRAM212_02718 [Faecalibacterium prausnitzii M21/2] gi|158442930|gb|EDP19935.1| hypothetical protein FAEPRAM212_02718 [Faecalibacterium prausnitzii M21/2] gi|295105571|emb|CBL03115.1| transcription antitermination factor NusB [Faecalibacterium prausnitzii SL3/3] Length = 148 Score = 40.4 bits (93), Expect = 0.079, Method: Compositional matrix adjust. Identities = 24/101 (23%), Positives = 46/101 (45%), Gaps = 1/101 (0%) Query: 70 RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISE 129 R++++ D +D I S L W+ RL + ++LR V E++ V I+E Sbjct: 49 RLLLNAYYDHSAEVDDEIRSHLR-NWTMERLPRVSLTVLRLAVAEMLFGGENKPGVAINE 107 Query: 130 YVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRSGCVSAITQ 170 V + + G++ +F+N +L V+R + + Q Sbjct: 108 AVELTKKYGAGEDYQFVNGLLGAVARDHGLSDEAVAESAEQ 148 >gi|57168521|ref|ZP_00367654.1| transcription antitermination factor NusB [Campylobacter coli RM2228] gi|305432938|ref|ZP_07402096.1| transcription antitermination factor NusB [Campylobacter coli JV20] gi|57020026|gb|EAL56703.1| transcription antitermination factor NusB [Campylobacter coli RM2228] gi|304444092|gb|EFM36747.1| transcription antitermination factor NusB [Campylobacter coli JV20] Length = 132 Score = 40.4 bits (93), Expect = 0.079, Method: Compositional matrix adjust. Identities = 25/77 (32%), Positives = 39/77 (50%), Gaps = 2/77 (2%) Query: 75 GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134 G++ ID ++ L E +L I +ILR G EL+ P ++I+E + +A Sbjct: 51 GIIKNLDDIDKNLNPYLNEN-EIEKLGHIERAILRLGAYELL-FTDTPNAIVINEAIELA 108 Query: 135 HDFFYGDEPKFINAVLD 151 + + PKFIN VLD Sbjct: 109 KELANDNSPKFINGVLD 125 >gi|307265164|ref|ZP_07546723.1| NusB antitermination factor [Thermoanaerobacter wiegelii Rt8.B1] gi|306919786|gb|EFN50001.1| NusB antitermination factor [Thermoanaerobacter wiegelii Rt8.B1] Length = 140 Score = 40.4 bits (93), Expect = 0.082, Method: Compositional matrix adjust. Identities = 36/141 (25%), Positives = 62/141 (43%), Gaps = 14/141 (9%) Query: 15 RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74 R AR V+ LYQ D+ ++I + Y+ E E+ + Sbjct: 2 NRTEAREWVVKMLYQYDVSRLPISKIFENF--YKENDPGE----------QKEYIENTVI 49 Query: 75 GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134 G ++ + ID I ++ W+ +R+ I +ILR + E+ + ++PV + I+E V IA Sbjct: 50 GAIEHLEEIDKEIER-YSQNWALNRMPKIDLAILRCSIYEM-QYGNIPVNISINEAVEIA 107 Query: 135 HDFFYGDEPKFINAVLDKVSR 155 + D FIN +L R Sbjct: 108 KKYSTEDSHVFINGLLGAFVR 128 >gi|226356156|ref|YP_002785896.1| N utilization substance protein B (Protein nusB)(NusB antitermination factor) [Deinococcus deserti VCD115] gi|259514814|sp|C1CVC5|NUSB_DEIDV RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|226318146|gb|ACO46142.1| putative N utilization substance protein B (Protein nusB)(NusB antitermination factor) [Deinococcus deserti VCD115] Length = 168 Score = 40.4 bits (93), Expect = 0.082, Method: Compositional matrix adjust. Identities = 27/99 (27%), Positives = 45/99 (45%), Gaps = 4/99 (4%) Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131 ++ G+ + ID + + WSF ++ ++LR ELI + P +I V Sbjct: 68 LVRGLEKHRADIDTTLRRTI-RGWSFDQMAQTDLNVLRLATFELIYT-AEPHPPVIESAV 125 Query: 132 CIAHDFFYGDEPKFINAVLDKVSRKEEIKRSGCVSAITQ 170 IA F D +F+N VL +SR ++ +G A Q Sbjct: 126 RIARKFGGDDSGRFVNGVLAGLSRS--LQSAGVAKADEQ 162 >gi|86609546|ref|YP_478308.1| transcription antitermination protein NusB [Synechococcus sp. JA-2-3B'a(2-13)] gi|119390840|sp|Q2JHC7|NUSB_SYNJB RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|86558088|gb|ABD03045.1| transcription antitermination factor NusB [Synechococcus sp. JA-2-3B'a(2-13)] Length = 291 Score = 40.4 bits (93), Expect = 0.082, Method: Compositional matrix adjust. Identities = 25/74 (33%), Positives = 37/74 (50%), Gaps = 1/74 (1%) Query: 80 KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139 K+ ID + L W R+ I ILR V+E+ S PV+V I+E V +A + Sbjct: 197 KEAIDARLQKALV-GWQLQRVGRIERDILRLAVVEMEILASSPVKVAINEAVELAKKYGD 255 Query: 140 GDEPKFINAVLDKV 153 + F+N VL +V Sbjct: 256 PEAAAFVNGVLRRV 269 >gi|254423258|ref|ZP_05036976.1| transcription antitermination factor NusB, putative [Synechococcus sp. PCC 7335] gi|196190747|gb|EDX85711.1| transcription antitermination factor NusB, putative [Synechococcus sp. PCC 7335] Length = 281 Score = 40.4 bits (93), Expect = 0.083, Method: Compositional matrix adjust. Identities = 25/77 (32%), Positives = 42/77 (54%), Gaps = 2/77 (2%) Query: 80 KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139 ++ ID ++ + EKWS RL + ILR ++E++ VP +V I E + +A + Sbjct: 206 QKAIDAQLNEAM-EKWSIRRLARVDRDILRLAMIEIV-YMDVPKKVAIDEAIEMAKRYSD 263 Query: 140 GDEPKFINAVLDKVSRK 156 D +FIN VL + + K Sbjct: 264 EDGYRFINGVLRRTTDK 280 >gi|157738073|ref|YP_001490757.1| transcription antitermination protein NusB [Arcobacter butzleri RM4018] gi|315636425|ref|ZP_07891669.1| transcription antitermination factor NusB [Arcobacter butzleri JV22] gi|166918802|sp|A8EVW4|NUSB_ARCB4 RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|157699927|gb|ABV68087.1| transcription termination factor NusB [Arcobacter butzleri RM4018] gi|315479291|gb|EFU69980.1| transcription antitermination factor NusB [Arcobacter butzleri JV22] Length = 131 Score = 40.4 bits (93), Expect = 0.084, Method: Compositional matrix adjust. Identities = 25/82 (30%), Positives = 43/82 (52%), Gaps = 2/82 (2%) Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131 + +G + ID I S L + + S + + SILR + E++ S+P +II+E + Sbjct: 49 LFNGTIKNLSQIDENIVSNLNQ-GTLSDIGSVEKSILRLAIYEIL-FESLPKAIIINEAI 106 Query: 132 CIAHDFFYGDEPKFINAVLDKV 153 ++ PKFIN +LDK+ Sbjct: 107 ELSKRLASDGAPKFINGLLDKI 128 >gi|93007217|ref|YP_581654.1| NusB antitermination factor [Psychrobacter cryohalolentis K5] gi|119390802|sp|Q1Q833|NUSB_PSYCK RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|92394895|gb|ABE76170.1| NusB antitermination factor [Psychrobacter cryohalolentis K5] Length = 315 Score = 40.4 bits (93), Expect = 0.085, Method: Compositional matrix adjust. Identities = 24/87 (27%), Positives = 47/87 (54%), Gaps = 2/87 (2%) Query: 68 WFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVII 127 ++ ++ + ++ +D LIS L + ++LD + +IL G EL +P +V++ Sbjct: 67 YYHEMMRDIPEQIDALDALISQHLDRE--INKLDTVEHAILLVGAYELQNRLEIPYKVVL 124 Query: 128 SEYVCIAHDFFYGDEPKFINAVLDKVS 154 E + + + F D K INAVLD+++ Sbjct: 125 DEAMKLNNHFGATDAHKLINAVLDRMA 151 >gi|241662317|ref|YP_002980677.1| transcription antitermination protein NusB [Ralstonia pickettii 12D] gi|240864344|gb|ACS62005.1| NusB antitermination factor [Ralstonia pickettii 12D] Length = 155 Score = 40.4 bits (93), Expect = 0.086, Method: Compositional matrix adjust. Identities = 38/156 (24%), Positives = 67/156 (42%), Gaps = 20/156 (12%) Query: 4 QDN-----KKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVE 58 QDN K K + RR AR A+Q LYQ ++ + ++ + L Sbjct: 3 QDNSQAKTKAPAKSARRR--ARELALQGLYQW-LLNRNDPGVV----------EAHLQDA 49 Query: 59 SVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIEC 118 + D F ++HG + + + + L + L + + L G EL+ C Sbjct: 50 QGFNKADRAHFDALLHGAIREETTLTEAFTPYLDR--PVAELSPVERAALLVGAYELVHC 107 Query: 119 HSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVS 154 +P +V+I+E V + F + K++N VLDK++ Sbjct: 108 VDIPYKVVINEAVELTKTFGGVEGYKYVNGVLDKLA 143 >gi|291519195|emb|CBK74416.1| transcription antitermination factor NusB [Butyrivibrio fibrisolvens 16/4] Length = 140 Score = 40.4 bits (93), Expect = 0.086, Method: Compositional matrix adjust. Identities = 27/114 (23%), Positives = 56/114 (49%), Gaps = 2/114 (1%) Query: 40 IISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSR 99 +I + R A+TE ++ D E+ + ++ + ID +I+ + + W +R Sbjct: 28 VIDTFLQGRNNAETEDLAKNNKTPEDEEYIKTKSEAIIAKLPEIDEMINKSV-DGWKTTR 86 Query: 100 LDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKV 153 + + +++R + E I+ ++PV V I+E V +A +F F+N L K+ Sbjct: 87 MAKVDLTLIRLALYE-IKFENIPVGVAINEAVTLADEFGTDSSAGFVNGALAKL 139 >gi|317133047|ref|YP_004092361.1| sun protein [Ethanoligenens harbinense YUAN-3] gi|315471026|gb|ADU27630.1| sun protein [Ethanoligenens harbinense YUAN-3] Length = 436 Score = 40.4 bits (93), Expect = 0.089, Method: Compositional matrix adjust. Identities = 26/105 (24%), Positives = 48/105 (45%), Gaps = 3/105 (2%) Query: 52 DTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAG 111 D EL+ ++ D +++GV+ R+ +D L+ + ++ +L +ILR G Sbjct: 27 DAELE-KAALSRRDAALATALVYGVVARRITLDYLLETA--SGRPVQKMQPVLRAILRLG 83 Query: 112 VLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRK 156 +L +P ++E V +A G F+N VL + RK Sbjct: 84 AYQLCYLDKIPARAAVNEAVQLAKKRHLGHASGFVNGVLRGLDRK 128 >gi|195953014|ref|YP_002121304.1| NusB antitermination factor [Hydrogenobaculum sp. Y04AAS1] gi|195932626|gb|ACG57326.1| NusB antitermination factor [Hydrogenobaculum sp. Y04AAS1] Length = 139 Score = 40.4 bits (93), Expect = 0.089, Method: Compositional matrix adjust. Identities = 25/75 (33%), Positives = 38/75 (50%), Gaps = 1/75 (1%) Query: 81 QHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYG 140 ++ID I+S L E W+ L I +ILR EL+ I +Y+ IA ++ Sbjct: 61 ENIDKKIASYL-ENWNLDDLGSIEKAILRTAFTELLYIKPKKNIQAIIDYIEIASNYGNK 119 Query: 141 DEPKFINAVLDKVSR 155 P FIN +L K+S+ Sbjct: 120 KTPSFINGILSKLSK 134 >gi|224369793|ref|YP_002603957.1| RsmB [Desulfobacterium autotrophicum HRM2] gi|223692510|gb|ACN15793.1| RsmB [Desulfobacterium autotrophicum HRM2] Length = 455 Score = 40.4 bits (93), Expect = 0.090, Method: Compositional matrix adjust. Identities = 32/121 (26%), Positives = 54/121 (44%), Gaps = 6/121 (4%) Query: 40 IISEYETYRFCADTELDVESVYL----HVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKW 95 I+ E E+ +F D L+ S L H D II+G + K+H+D LI+ K Sbjct: 23 ILIENESSKFTLDKILERYSAQLESLAHRDRALANAIIYGTLRWKEHLDWLITPF--SKR 80 Query: 96 SFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSR 155 +++ +C LR + + + +PV ++ V A F+NAVL K + Sbjct: 81 PLDQIEPAICYTLRTALYQTVFMDKIPVSAAVNTAVNAAKKLSNTGAAGFVNAVLRKATT 140 Query: 156 K 156 + Sbjct: 141 R 141 >gi|116492583|ref|YP_804318.1| NusB antitermination factor [Pediococcus pentosaceus ATCC 25745] gi|122265953|sp|Q03FZ6|NUSB_PEDPA RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|116102733|gb|ABJ67876.1| NusB antitermination factor [Pediococcus pentosaceus ATCC 25745] Length = 133 Score = 40.4 bits (93), Expect = 0.090, Method: Compositional matrix adjust. Identities = 26/89 (29%), Positives = 46/89 (51%), Gaps = 1/89 (1%) Query: 67 EWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVI 126 ++ + ++ GV + I+ IS L + W+ RL+ IL+ G E I+ P +V Sbjct: 46 QFLKDLVMGVSLNLEAINETISGELKKGWTVKRLESPDRVILQMGTYE-IKYTETPDKVA 104 Query: 127 ISEYVCIAHDFFYGDEPKFINAVLDKVSR 155 I+E + +A + D KFIN VL +++ Sbjct: 105 INEALELAKKYTDEDARKFINGVLSNIAK 133 >gi|253572755|ref|ZP_04850155.1| conserved hypothetical protein [Bacteroides sp. 1_1_6] gi|298384353|ref|ZP_06993913.1| NusB family protein [Bacteroides sp. 1_1_14] gi|251837655|gb|EES65746.1| conserved hypothetical protein [Bacteroides sp. 1_1_6] gi|298262632|gb|EFI05496.1| NusB family protein [Bacteroides sp. 1_1_14] Length = 308 Score = 40.4 bits (93), Expect = 0.091, Method: Compositional matrix adjust. Identities = 20/75 (26%), Positives = 39/75 (52%), Gaps = 2/75 (2%) Query: 92 TEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLD 151 T+ W R+ + I++ + E++ ++PV V ++EYV IA + FIN LD Sbjct: 234 TKNWDLDRIAFMDIIIMQTALAEILSFPNIPVSVSLNEYVEIAKLYSTAKSGSFINGTLD 293 Query: 152 KVSRKEEIKRSGCVS 166 + ++K+ G ++ Sbjct: 294 GIVN--QLKKEGKLT 306 >gi|87123339|ref|ZP_01079190.1| Antitermination protein NusB [Synechococcus sp. RS9917] gi|86169059|gb|EAQ70315.1| Antitermination protein NusB [Synechococcus sp. RS9917] Length = 219 Score = 40.4 bits (93), Expect = 0.092, Method: Compositional matrix adjust. Identities = 25/80 (31%), Positives = 41/80 (51%), Gaps = 2/80 (2%) Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135 V++++ ID + + E W SRL I ILR V++L H+ P V +E V +AH Sbjct: 134 VLEQRSAIDARLDGVM-EGWRLSRLPRIDRDILRLAVVDLTALHT-PAAVACNEAVELAH 191 Query: 136 DFFYGDEPKFINAVLDKVSR 155 + + IN VL ++ + Sbjct: 192 RYSDDQGRRMINGVLRRLQQ 211 >gi|261749509|ref|YP_003257195.1| antitermination protein NusB [Blattabacterium sp. (Periplaneta americana) str. BPLAN] gi|261497602|gb|ACX84052.1| antitermination protein NusB [Blattabacterium sp. (Periplaneta americana) str. BPLAN] Length = 312 Score = 40.4 bits (93), Expect = 0.093, Method: Compositional matrix adjust. Identities = 31/130 (23%), Positives = 63/130 (48%), Gaps = 8/130 (6%) Query: 27 LYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH-GVMDRKQHIDL 85 LY ++ C T + I + + +VY + + + F V ++ + K+ + Sbjct: 174 LYIAHMMVCKTLQFI------QLSTPKNFKLYNVYRNDENKKFIVSLYRNTIFHKREFNE 227 Query: 86 LISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKF 145 LIS+ ++ W+ R+ +I IL+ + E + ++P + ++EY+ IA F F Sbjct: 228 LISN-ISNNWNIERIAIIDLIILQMAICEFLYFPNIPPKATMNEYIEIAKIFCMDKSKTF 286 Query: 146 INAVLDKVSR 155 IN +LD+V + Sbjct: 287 INGILDQVFK 296 >gi|255692806|ref|ZP_05416481.1| NusB family protein [Bacteroides finegoldii DSM 17565] gi|260621435|gb|EEX44306.1| NusB family protein [Bacteroides finegoldii DSM 17565] Length = 308 Score = 40.4 bits (93), Expect = 0.093, Method: Compositional matrix adjust. Identities = 20/75 (26%), Positives = 39/75 (52%), Gaps = 2/75 (2%) Query: 92 TEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLD 151 T+ W R+ + I++ + E++ ++PV V ++EYV IA + FIN LD Sbjct: 234 TKNWDLDRIAFMDIIIMQTALAEILSFPNIPVSVSLNEYVEIAKLYSTSKSGSFINGTLD 293 Query: 152 KVSRKEEIKRSGCVS 166 + ++K+ G ++ Sbjct: 294 GIVN--QLKKEGKLT 306 >gi|83746193|ref|ZP_00943247.1| N utilization substance protein B [Ralstonia solanacearum UW551] gi|207728164|ref|YP_002256558.1| n utilization substance protein b [Ralstonia solanacearum MolK2] gi|207744100|ref|YP_002260492.1| n utilization substance protein b homolog (protein nusb) [Ralstonia solanacearum IPO1609] gi|300704874|ref|YP_003746477.1| antitermination factor [Ralstonia solanacearum CFBP2957] gi|83727159|gb|EAP74283.1| N utilization substance protein B [Ralstonia solanacearum UW551] gi|206591409|emb|CAQ57021.1| n utilization substance protein b homolog (protein nusb) [Ralstonia solanacearum MolK2] gi|206595504|emb|CAQ62431.1| n utilization substance protein b homolog (protein nusb) [Ralstonia solanacearum IPO1609] gi|299072538|emb|CBJ43888.1| antitermination factor (N utilization substance B) (transcriptional antiterminator) [Ralstonia solanacearum CFBP2957] Length = 155 Score = 40.4 bits (93), Expect = 0.094, Method: Compositional matrix adjust. Identities = 41/162 (25%), Positives = 71/162 (43%), Gaps = 32/162 (19%) Query: 4 QDN-----KKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVE 58 QDN K K + RR AR A+Q LYQ ++ + ++ + L Sbjct: 3 QDNSPAKPKAAPKSARRR--ARELALQGLYQW-LLNRNDPGVV----------EAHLHDA 49 Query: 59 SVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWS------FSRLDMILCSILRAGV 112 + D F ++HG + + + LTE ++ + L + + L G Sbjct: 50 QGFNKADRAHFDALLHGAIREE--------ATLTESFTPFLDRPVAELSPVERAALLVGA 101 Query: 113 LELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVS 154 EL+ C +P +V+I+E V +A F + K++N VLDK++ Sbjct: 102 YELVHCIDIPYKVVINEAVELAKTFGGVEGYKYVNGVLDKLA 143 >gi|119357565|ref|YP_912209.1| sun protein [Chlorobium phaeobacteroides DSM 266] gi|119354914|gb|ABL65785.1| sun protein [Chlorobium phaeobacteroides DSM 266] Length = 444 Score = 40.4 bits (93), Expect = 0.094, Method: Compositional matrix adjust. Identities = 24/83 (28%), Positives = 44/83 (53%), Gaps = 2/83 (2%) Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131 +++GV+ ++ ID +IS + F + +L +ILR GV +L+ +P +SE V Sbjct: 45 LVNGVLRMRKKIDFIISKFYHHR--FEKAAPVLQNILRLGVYQLLFLEKIPEWAAVSECV 102 Query: 132 CIAHDFFYGDEPKFINAVLDKVS 154 +A + K +N VL K++ Sbjct: 103 DLARKYKGERMAKLVNGVLRKIT 125 >gi|291558612|emb|CBL37412.1| transcription antitermination factor NusB [butyrate-producing bacterium SSC/2] Length = 137 Score = 40.4 bits (93), Expect = 0.095, Method: Compositional matrix adjust. Identities = 23/67 (34%), Positives = 32/67 (47%) Query: 89 SCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINA 148 S T W+ RL SILR E++ VP +V I+E V +A + FIN Sbjct: 66 SAHTNAWNLERLGKAELSILRLATYEILLDEQVPRKVAINEAVELAKKYCNEKAAPFING 125 Query: 149 VLDKVSR 155 VL K+ + Sbjct: 126 VLSKIGQ 132 >gi|29349999|ref|NP_813502.1| putative nitrogen utilization substance protein [Bacteroides thetaiotaomicron VPI-5482] gi|29341910|gb|AAO79696.1| putative nitrogen utilization substance protein [Bacteroides thetaiotaomicron VPI-5482] Length = 260 Score = 40.0 bits (92), Expect = 0.097, Method: Compositional matrix adjust. Identities = 20/75 (26%), Positives = 39/75 (52%), Gaps = 2/75 (2%) Query: 92 TEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLD 151 T+ W R+ + I++ + E++ ++PV V ++EYV IA + FIN LD Sbjct: 186 TKNWDLDRIAFMDIIIMQTALAEILSFPNIPVSVSLNEYVEIAKLYSTAKSGSFINGTLD 245 Query: 152 KVSRKEEIKRSGCVS 166 + ++K+ G ++ Sbjct: 246 GIVN--QLKKEGKLT 258 >gi|153807762|ref|ZP_01960430.1| hypothetical protein BACCAC_02045 [Bacteroides caccae ATCC 43185] gi|149129371|gb|EDM20585.1| hypothetical protein BACCAC_02045 [Bacteroides caccae ATCC 43185] Length = 308 Score = 40.0 bits (92), Expect = 0.098, Method: Compositional matrix adjust. Identities = 20/75 (26%), Positives = 39/75 (52%), Gaps = 2/75 (2%) Query: 92 TEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLD 151 T+ W R+ + I++ + E++ ++PV V ++EYV IA + FIN LD Sbjct: 234 TKNWELDRIAFMDVIIMQTALAEILSFPNIPVSVSLNEYVEIAKLYSTSKSGSFINGTLD 293 Query: 152 KVSRKEEIKRSGCVS 166 + ++K+ G ++ Sbjct: 294 GIVN--QLKKEGKLT 306 >gi|303228824|ref|ZP_07315638.1| transcription antitermination factor NusB [Veillonella atypica ACS-134-V-Col7a] gi|303232103|ref|ZP_07318806.1| transcription antitermination factor NusB [Veillonella atypica ACS-049-V-Sch6] gi|302513209|gb|EFL55248.1| transcription antitermination factor NusB [Veillonella atypica ACS-049-V-Sch6] gi|302516536|gb|EFL58464.1| transcription antitermination factor NusB [Veillonella atypica ACS-134-V-Col7a] Length = 134 Score = 40.0 bits (92), Expect = 0.10, Method: Compositional matrix adjust. Identities = 28/99 (28%), Positives = 50/99 (50%), Gaps = 2/99 (2%) Query: 60 VYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLEL-IEC 118 + L +D+ + II GV+ + ID ++ T++ F +D + +ILR + EL Sbjct: 37 ISLSMDIAYANQIIDGVLSHLEEIDTILEPYCTKR-KFVLMDKVDRAILRLAIWELNYNS 95 Query: 119 HSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKE 157 V ++I+E V +A F K INA+LD ++ + Sbjct: 96 EEVSPSIVINEAVQLAKSFGSDASYKLINAILDAYNKSK 134 >gi|302823170|ref|XP_002993239.1| hypothetical protein SELMODRAFT_136794 [Selaginella moellendorffii] gi|300138909|gb|EFJ05660.1| hypothetical protein SELMODRAFT_136794 [Selaginella moellendorffii] Length = 476 Score = 40.0 bits (92), Expect = 0.10, Method: Compositional matrix adjust. Identities = 25/87 (28%), Positives = 48/87 (55%), Gaps = 2/87 (2%) Query: 73 IHGVMDRKQHIDLLISSCL-TEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131 + G++ K+++D +IS+ ++ F R++ IL +LR G EL++ VP +++E V Sbjct: 68 VAGIVRWKKYLDYVISNVYDKDQNEFERMEPILKQVLRLGSYELLKLE-VPAYAVVNEAV 126 Query: 132 CIAHDFFYGDEPKFINAVLDKVSRKEE 158 +A+ K NA+L V+ +E Sbjct: 127 KLANAASRAGAGKLANALLRAVASHKE 153 >gi|310779261|ref|YP_003967594.1| NusB antitermination factor [Ilyobacter polytropus DSM 2926] gi|309748584|gb|ADO83246.1| NusB antitermination factor [Ilyobacter polytropus DSM 2926] Length = 132 Score = 40.0 bits (92), Expect = 0.10, Method: Compositional matrix adjust. Identities = 28/92 (30%), Positives = 47/92 (51%), Gaps = 6/92 (6%) Query: 67 EWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVI 126 E+ +GV + K I I +T W+ R+ + ++L+ EL++ V E++ Sbjct: 45 EFLERYANGVTENKAEIQRTIDENMT-GWTLDRIGNVERTLLKFATYELLK-EDVGYEIV 102 Query: 127 ISEYVCIAHDFFYGDEP--KFINAVLDKVSRK 156 I+E V +A YG+E +FIN VL K+ K Sbjct: 103 INEIVELAKK--YGEEKSHEFINGVLAKIVNK 132 >gi|299140507|ref|ZP_07033645.1| NusB family protein [Prevotella oris C735] gi|298577473|gb|EFI49341.1| NusB family protein [Prevotella oris C735] Length = 321 Score = 40.0 bits (92), Expect = 0.10, Method: Compositional matrix adjust. Identities = 18/66 (27%), Positives = 35/66 (53%) Query: 89 SCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINA 148 S + W F RL + I++ + E++ ++P+ V I+EYV +A + +IN Sbjct: 230 SEASRNWDFGRLAYMDVVIMQIAIAEMLTFPNIPISVTINEYVDLAKLYSTPKSGGYING 289 Query: 149 VLDKVS 154 +LD ++ Sbjct: 290 MLDSIA 295 >gi|281423250|ref|ZP_06254163.1| NusB family protein [Prevotella oris F0302] gi|281402586|gb|EFB33417.1| NusB family protein [Prevotella oris F0302] Length = 319 Score = 40.0 bits (92), Expect = 0.10, Method: Compositional matrix adjust. Identities = 18/66 (27%), Positives = 35/66 (53%) Query: 89 SCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINA 148 S + W F RL + I++ + E++ ++P+ V I+EYV +A + +IN Sbjct: 230 SEASRNWDFGRLAYMDVVIMQIAIAEMLTFPNIPISVTINEYVDLAKLYSTQKSGGYING 289 Query: 149 VLDKVS 154 +LD ++ Sbjct: 290 MLDSIA 295 >gi|319941815|ref|ZP_08016137.1| hypothetical protein HMPREF9464_01356 [Sutterella wadsworthensis 3_1_45B] gi|319804748|gb|EFW01615.1| hypothetical protein HMPREF9464_01356 [Sutterella wadsworthensis 3_1_45B] Length = 173 Score = 40.0 bits (92), Expect = 0.10, Method: Compositional matrix adjust. Identities = 25/92 (27%), Positives = 45/92 (48%), Gaps = 4/92 (4%) Query: 65 DLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVE 124 D E ++ G + ++ SS + R+ ++ +IL G EL+ C P Sbjct: 71 DRELLTTLLSGAIGEHAALEAEFSSFVDR--DLKRVSLVERAILFIGTYELLRCPQTPYR 128 Query: 125 VIISEYVCIAHDFFYGDEPKFINAVLDKVSRK 156 V+++E + +A F G +F NAVL++V+ K Sbjct: 129 VVLNETIELAKHF--GSGYRFTNAVLERVAAK 158 >gi|183602591|ref|ZP_02963956.1| NusB antitermination protein [Bifidobacterium animalis subsp. lactis HN019] gi|219683633|ref|YP_002470016.1| transcription antitermination factor NusB [Bifidobacterium animalis subsp. lactis AD011] gi|241190665|ref|YP_002968059.1| transcription termination factor [Bifidobacterium animalis subsp. lactis Bl-04] gi|241196071|ref|YP_002969626.1| transcription termination factor [Bifidobacterium animalis subsp. lactis DSM 10140] gi|254772615|sp|B8DTW1|NUSB_BIFA0 RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|183218232|gb|EDT88878.1| NusB antitermination protein [Bifidobacterium animalis subsp. lactis HN019] gi|219621283|gb|ACL29440.1| transcription antitermination factor NusB [Bifidobacterium animalis subsp. lactis AD011] gi|240249057|gb|ACS45997.1| Transcription termination factor [Bifidobacterium animalis subsp. lactis Bl-04] gi|240250625|gb|ACS47564.1| Transcription termination factor [Bifidobacterium animalis subsp. lactis DSM 10140] gi|289178403|gb|ADC85649.1| N utilization substance protein B [Bifidobacterium animalis subsp. lactis BB-12] gi|295793654|gb|ADG33189.1| Transcription termination factor [Bifidobacterium animalis subsp. lactis V9] Length = 154 Score = 40.0 bits (92), Expect = 0.10, Method: Compositional matrix adjust. Identities = 36/135 (26%), Positives = 58/135 (42%), Gaps = 12/135 (8%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 R AR A+ LY+ D G ++ E + A T L E+ I+ G Sbjct: 3 RSTARRRALNTLYEADEKGQDFLSLLDE-RIAQPGAQTPL----------PEYAIEIVRG 51 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135 V + ++ ID +++ T W R+ I +ILR E++ VP +V I E + ++ Sbjct: 52 VDEHRRDIDSQLNTHST-GWKVKRMHAIDRNILRIATWEILYNDDVPDKVAIDEALNLSK 110 Query: 136 DFFYGDEPKFINAVL 150 P FI+ VL Sbjct: 111 TLSDDAAPSFIHGVL 125 >gi|332668432|ref|YP_004451220.1| NusB antitermination factor [Haliscomenobacter hydrossis DSM 1100] gi|332337246|gb|AEE54347.1| NusB antitermination factor [Haliscomenobacter hydrossis DSM 1100] Length = 312 Score = 40.0 bits (92), Expect = 0.11, Method: Compositional matrix adjust. Identities = 17/59 (28%), Positives = 35/59 (59%) Query: 95 WSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKV 153 W R+ +I +++ ++EL+ S+P +V ++E+V IA ++ FIN +LD++ Sbjct: 234 WDVERVAIIDMILIKMALVELMTFKSIPSKVTLNEFVEIAKNYSTDKSKDFINGILDRL 292 >gi|313157987|gb|EFR57393.1| conserved hypothetical protein [Alistipes sp. HGB5] Length = 311 Score = 40.0 bits (92), Expect = 0.11, Method: Compositional matrix adjust. Identities = 23/77 (29%), Positives = 38/77 (49%), Gaps = 4/77 (5%) Query: 91 LTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVL 150 T W R+ + I+ + EL S+PV+V + EY+ I+ + FIN VL Sbjct: 231 FTSNWDVERIVFMDNLIIGTAMAELTSFPSIPVKVTLDEYIEISKYYSTPGSSTFINGVL 290 Query: 151 DKV----SRKEEIKRSG 163 DK+ + + IK++G Sbjct: 291 DKIVDSLTAEGRIKKAG 307 >gi|149370659|ref|ZP_01890348.1| putative N utilization substance protein [unidentified eubacterium SCB49] gi|149356210|gb|EDM44767.1| putative N utilization substance protein [unidentified eubacterium SCB49] Length = 339 Score = 40.0 bits (92), Expect = 0.11, Method: Compositional matrix adjust. Identities = 19/62 (30%), Positives = 32/62 (51%) Query: 92 TEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLD 151 T W R+ I I++ G+ E + S+P I+EY+ I+ ++ FIN +LD Sbjct: 260 TPNWDQDRIADIDLIIIKMGIAEFLYFPSIPTRATINEYLEISKEYSTPKSSIFINGILD 319 Query: 152 KV 153 K+ Sbjct: 320 KI 321 >gi|293363740|ref|ZP_06610483.1| transcription antitermination factor NusB [Mycoplasma alligatoris A21JP2] gi|292552705|gb|EFF41472.1| transcription antitermination factor NusB [Mycoplasma alligatoris A21JP2] Length = 150 Score = 40.0 bits (92), Expect = 0.11, Method: Compositional matrix adjust. Identities = 25/89 (28%), Positives = 44/89 (49%), Gaps = 8/89 (8%) Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131 + G+ I +I+S L W++ R+ + ++L EL ++P +++I+E V Sbjct: 47 FLEGIEKNYVFIKKIINSFLNTDWTWHRIPPFIRAVLINATAELF---AIPPKIVINEAV 103 Query: 132 CIAHDFFYGDEP-----KFINAVLDKVSR 155 I DFF E KF+NA+L V + Sbjct: 104 EITKDFFCMTEKDQKFYKFVNAILQNVYK 132 >gi|315651135|ref|ZP_07904167.1| rRNA (cytosine-5-)-methyltransferase [Eubacterium saburreum DSM 3986] gi|315486600|gb|EFU76950.1| rRNA (cytosine-5-)-methyltransferase [Eubacterium saburreum DSM 3986] Length = 444 Score = 40.0 bits (92), Expect = 0.11, Method: Compositional matrix adjust. Identities = 34/139 (24%), Positives = 63/139 (45%), Gaps = 14/139 (10%) Query: 20 RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79 R ++AL ID+ G + ++I D L+ S D +F ++HGV++ Sbjct: 7 RTLILEALMLIDVEGEYSHKVI----------DMALEKYSYLSKADRGFFSKVVHGVVEY 56 Query: 80 KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139 + +D +I K R+ ++ ILR + +++ VP II+E V + Sbjct: 57 RLQLDFIIKKYNGGK----RIKPVIREILRMAIYQILYMDRVPDRAIINEAVNLVKLRRL 112 Query: 140 GDEPKFINAVLDKVSRKEE 158 F+N +L K+S ++E Sbjct: 113 TALTGFVNGILRKISSEKE 131 >gi|313897409|ref|ZP_07830952.1| transcription antitermination factor NusB [Clostridium sp. HGF2] gi|312957779|gb|EFR39404.1| transcription antitermination factor NusB [Clostridium sp. HGF2] Length = 125 Score = 40.0 bits (92), Expect = 0.11, Method: Compositional matrix adjust. Identities = 25/90 (27%), Positives = 47/90 (52%), Gaps = 2/90 (2%) Query: 64 VDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPV 123 +D + V I + + +ID I++ L + W+F+RL + +IL EL + + P Sbjct: 38 IDPFLYTVTIDAIRYQDVYIDK-INAALRQDWTFARLGFVEQAILMMAACEL-DLETAPK 95 Query: 124 EVIISEYVCIAHDFFYGDEPKFINAVLDKV 153 ++I E V +A + + + IN VLD++ Sbjct: 96 AIVIDEAVTLAKKYCDDETYRLINGVLDRL 125 >gi|326390202|ref|ZP_08211763.1| NusB antitermination factor [Thermoanaerobacter ethanolicus JW 200] gi|325993850|gb|EGD52281.1| NusB antitermination factor [Thermoanaerobacter ethanolicus JW 200] Length = 140 Score = 40.0 bits (92), Expect = 0.11, Method: Compositional matrix adjust. Identities = 36/141 (25%), Positives = 62/141 (43%), Gaps = 14/141 (9%) Query: 15 RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74 R AR V+ LYQ D+ ++I + Y+ E E+ + Sbjct: 2 NRTEAREWIVKMLYQYDVSRLPISKIFENF--YKENDPGE----------QKEYIENTVI 49 Query: 75 GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134 G ++ + ID I ++ W+ +R+ I +ILR + E+ + ++PV + I+E V IA Sbjct: 50 GAIEHLEEIDKEIER-YSQNWALNRMPKIDLAILRCSIYEM-QYGNIPVNISINEAVEIA 107 Query: 135 HDFFYGDEPKFINAVLDKVSR 155 + D FIN +L R Sbjct: 108 KKYSTEDSHVFINGLLGAFVR 128 >gi|332653013|ref|ZP_08418758.1| transcription antitermination factor NusB [Ruminococcaceae bacterium D16] gi|332518159|gb|EGJ47762.1| transcription antitermination factor NusB [Ruminococcaceae bacterium D16] Length = 164 Score = 40.0 bits (92), Expect = 0.12, Method: Compositional matrix adjust. Identities = 38/148 (25%), Positives = 62/148 (41%), Gaps = 10/148 (6%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEII-SEYETYRFCADTELDVES-VYLHVDLE----WF 69 R AR AV ++ + S E++ SE RF EL ES +Y E + Sbjct: 3 RSTAREIAVHLIFSLGFGTQSAEEVLDSELTRERF---EELGGESQLYAQFPNEKQERYI 59 Query: 70 RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISE 129 R ++ GV +D I+ WSF+R+ + +ILR + E++ +P I Sbjct: 60 RDLVRGVFAHGPELDDYIARYAV-GWSFARIPRMAAAILRTAMYEVLYMPDIPNAAAIDA 118 Query: 130 YVCIAHDFFYGDEPKFINAVLDKVSRKE 157 V + + + F+N +L R E Sbjct: 119 AVEMTKKYEPQEVAAFVNGILGTFVRTE 146 >gi|113954607|ref|YP_729249.1| transcription antitermination protein NusB [Synechococcus sp. CC9311] gi|113881958|gb|ABI46916.1| putative transcription antitermination factor NusB [Synechococcus sp. CC9311] Length = 210 Score = 40.0 bits (92), Expect = 0.12, Method: Compositional matrix adjust. Identities = 26/78 (33%), Positives = 41/78 (52%), Gaps = 2/78 (2%) Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135 V+ +++ ID ++ + E W +RL I ILR V++L E + P V +E V +AH Sbjct: 126 VLKKRKAIDQMLDGVM-EGWRLTRLPRIDRDILRLAVIDLSELKT-PAAVACNEAVELAH 183 Query: 136 DFFYGDEPKFINAVLDKV 153 F K IN VL ++ Sbjct: 184 RFSDEQGRKMINGVLRRL 201 >gi|294788786|ref|ZP_06754027.1| transcription antitermination factor NusB [Simonsiella muelleri ATCC 29453] gi|294483268|gb|EFG30954.1| transcription antitermination factor NusB [Simonsiella muelleri ATCC 29453] Length = 156 Score = 40.0 bits (92), Expect = 0.12, Method: Compositional matrix adjust. Identities = 39/148 (26%), Positives = 61/148 (41%), Gaps = 14/148 (9%) Query: 7 KKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDL 66 +K L S RR AR VQALYQ + EI + + + + D Sbjct: 3 EKKLHKSPRRR-AREFVVQALYQAALNQKPAPEIANFLREH-----------TDFKRADA 50 Query: 67 EWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVI 126 E F + G ++ +LI L ++ I +IL EL P V+ Sbjct: 51 ELFDALFFGTNANQRAYMMLIRPHLDRDEKL--INPIERAILLMATHELKTMPETPHAVV 108 Query: 127 ISEYVCIAHDFFYGDEPKFINAVLDKVS 154 I+E + + F D KF+N++LDK++ Sbjct: 109 INEAIEVTKTFGGTDSHKFVNSILDKLA 136 >gi|260654155|ref|ZP_05859645.1| transcription antitermination factor NusB [Jonquetella anthropi E3_33 E1] gi|260631140|gb|EEX49334.1| transcription antitermination factor NusB [Jonquetella anthropi E3_33 E1] Length = 165 Score = 40.0 bits (92), Expect = 0.12, Method: Compositional matrix adjust. Identities = 46/159 (28%), Positives = 69/159 (43%), Gaps = 20/159 (12%) Query: 13 SHRRGIARLAAVQALYQIDIIG--CSTTEIISE-YETYRFCADT-ELDVESVYL------ 62 S ++ + R AVQAL+ +D T ++++ +E F D E+D E+ Sbjct: 11 SQKQHLRRFLAVQALFALDSSADPAGTLRLLADDWELLGFHGDELEIDDETASQLPAISA 70 Query: 63 ---HVDLEWF-RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIEC 118 ++W RV H +D +D LI+ CL W RLD + +ILR E Sbjct: 71 EDCGAAVQWAERVWSH--LD---QVDSLIAPCL-RGWRLPRLDGVDRAILRLCFFESRVE 124 Query: 119 HSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKE 157 SV V SE V +A KF+N V+ + R E Sbjct: 125 GSVNDAVAASEAVILAKAMGGEQSAKFVNGVIGSIMRGE 163 >gi|300692261|ref|YP_003753256.1| antitermination factor (N utilization substance B) (transcriptional antiterminator) [Ralstonia solanacearum PSI07] gi|299079321|emb|CBJ51993.1| antitermination factor (N utilization substance B) (transcriptional antiterminator) [Ralstonia solanacearum PSI07] Length = 155 Score = 40.0 bits (92), Expect = 0.12, Method: Compositional matrix adjust. Identities = 38/154 (24%), Positives = 68/154 (44%), Gaps = 27/154 (17%) Query: 7 KKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDL 66 K K + RR AR A+Q LYQ ++ + ++ + L + D Sbjct: 11 KAPPKSARRR--ARELALQGLYQW-LLNRNDPGVV----------EAHLHDAQGFNKADR 57 Query: 67 EWFRVIIHGVMDRKQHIDLLISSCLTEKWS------FSRLDMILCSILRAGVLELIECHS 120 F ++HG + + + LTE ++ + L + + L G EL+ C Sbjct: 58 AHFDALLHGAIREE--------ATLTESFTPFLDRPVAELSPVERAALLVGAYELVHCVD 109 Query: 121 VPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVS 154 +P +V+I+E V +A F + K++N VLDK++ Sbjct: 110 IPYKVVINEAVELAKTFGGVEGYKYVNGVLDKLA 143 >gi|253995875|ref|YP_003047939.1| NusB antitermination factor [Methylotenera mobilis JLW8] gi|253982554|gb|ACT47412.1| NusB antitermination factor [Methylotenera mobilis JLW8] Length = 178 Score = 40.0 bits (92), Expect = 0.12, Method: Compositional matrix adjust. Identities = 32/103 (31%), Positives = 49/103 (47%), Gaps = 5/103 (4%) Query: 61 YLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHS 120 Y D +F+ ++ V + ID I + + L + +ILR EL+ S Sbjct: 74 YNKADEAYFKHLLQAVTENLTAIDGKIVGFIDR--TLEELSPVEHAILRIAGCELMFDLS 131 Query: 121 VPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVS---RKEEIK 160 +P V+I+E V +A F D K+IN VLDK + R E+K Sbjct: 132 IPYRVVINEGVELAKVFGGTDGHKYINGVLDKFAADVRAAEVK 174 >gi|288941488|ref|YP_003443728.1| NusB antitermination factor [Allochromatium vinosum DSM 180] gi|288896860|gb|ADC62696.1| NusB antitermination factor [Allochromatium vinosum DSM 180] Length = 171 Score = 40.0 bits (92), Expect = 0.12, Method: Compositional matrix adjust. Identities = 43/169 (25%), Positives = 77/169 (45%), Gaps = 18/169 (10%) Query: 1 MTIQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEI----ISEYETYRFCA----- 51 MT +N + +S R R AA+ ALYQ + G I + + + A Sbjct: 1 MTTPENPR--PISPRSQSRRYAAL-ALYQWRLTGDDPMAIKRHLLDDPKWLDAVAASLNG 57 Query: 52 ---DTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSIL 108 + EL E + + ++E +++GV ID + L S++D + +IL Sbjct: 58 VSDEDELAAEDRF-NFNVELLDELLNGVPTHIDAIDAQLDRFLDR--PISQVDPVELAIL 114 Query: 109 RAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKE 157 R G E++ ++P V I+E V + + K++N VLDK++R++ Sbjct: 115 RLGAYEILFSDNIPDRVAINEAVELTKLLGAHEGHKYVNGVLDKIARRK 163 >gi|226226029|ref|YP_002760135.1| putative rRNA methyltransferase [Gemmatimonas aurantiaca T-27] gi|226089220|dbj|BAH37665.1| putative rRNA methyltransferase [Gemmatimonas aurantiaca T-27] Length = 428 Score = 40.0 bits (92), Expect = 0.12, Method: Compositional matrix adjust. Identities = 27/95 (28%), Positives = 47/95 (49%), Gaps = 8/95 (8%) Query: 65 DLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVE 124 D W + ++ GV+ ++ +D ++++ + + S LD + ILR G +L+ SVP Sbjct: 22 DRRWVQELVWGVLRHRERLDAILATRI--RGGLSVLDDGVLDILRLGTYQLLSMDSVPPY 79 Query: 125 VIIS---EYVCIAHDFFYGDEPKFINAVLDKVSRK 156 I E V H G K +NAVL ++ R+ Sbjct: 80 AAIGQSVEAVKRKHGIGAG---KLVNAVLRRIDRE 111 >gi|315637897|ref|ZP_07893084.1| transcription antitermination factor NusB [Campylobacter upsaliensis JV21] gi|315482009|gb|EFU72626.1| transcription antitermination factor NusB [Campylobacter upsaliensis JV21] Length = 132 Score = 40.0 bits (92), Expect = 0.12, Method: Compositional matrix adjust. Identities = 37/143 (25%), Positives = 65/143 (45%), Gaps = 20/143 (13%) Query: 16 RGIARLAAVQALYQIDIIGCST---TEIISEYETYRFCADTELDVESVYLHVDLEWFRVI 72 R AR + + LY +++ G + TE + E + + L S+Y Sbjct: 4 RHQARQSVISLLYALELNGKNDNFITEFLQEKKIRNEAKNFTL---SLY----------- 49 Query: 73 IHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVC 132 +GV++ Q +D I L E ++ I +ILR G EL+ ++ ++I+E V Sbjct: 50 -NGVLEHLQSLDERIDVFLNEN-KIHQIGHIERAILRLGAFELLHTDTLAA-IVINEAVE 106 Query: 133 IAHDFFYGDEPKFINAVLDKVSR 155 +A + + PK IN VLD + + Sbjct: 107 LAKEMANENAPKLINGVLDGLQK 129 >gi|295100829|emb|CBK98374.1| transcription antitermination factor NusB [Faecalibacterium prausnitzii L2-6] Length = 144 Score = 39.7 bits (91), Expect = 0.13, Method: Compositional matrix adjust. Identities = 21/75 (28%), Positives = 42/75 (56%), Gaps = 1/75 (1%) Query: 83 IDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDE 142 +D LIS+ L W+ RL + ++LR G+ E++ V+I+E V + + ++ Sbjct: 62 VDDLISAHLR-NWTMERLPRVSLTVLRLGLAEMLYGDEKKPGVVINEAVELTKKYGADED 120 Query: 143 PKFINAVLDKVSRKE 157 +F+N +L V+R++ Sbjct: 121 YQFVNGLLGTVAREQ 135 >gi|164688612|ref|ZP_02212640.1| hypothetical protein CLOBAR_02257 [Clostridium bartlettii DSM 16795] gi|164603025|gb|EDQ96490.1| hypothetical protein CLOBAR_02257 [Clostridium bartlettii DSM 16795] Length = 169 Score = 39.7 bits (91), Expect = 0.13, Method: Compositional matrix adjust. Identities = 19/62 (30%), Positives = 35/62 (56%) Query: 92 TEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLD 151 T+ WS +R I +IL+ + E++ ++P +V I++ + +A + PKFIN +L Sbjct: 101 TKNWSINRFSKIDLAILQIAIAEMLSDLNIPEKVSINQAIDLAKIYCEEKTPKFINGILG 160 Query: 152 KV 153 V Sbjct: 161 SV 162 >gi|153855357|ref|ZP_01996506.1| hypothetical protein DORLON_02520 [Dorea longicatena DSM 13814] gi|149752177|gb|EDM62108.1| hypothetical protein DORLON_02520 [Dorea longicatena DSM 13814] Length = 436 Score = 39.7 bits (91), Expect = 0.13, Method: Compositional matrix adjust. Identities = 24/84 (28%), Positives = 46/84 (54%), Gaps = 2/84 (2%) Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131 +++G ++R ID +I+ L K +++ ++ +ILR+ V ++ SVP I +E V Sbjct: 50 VVNGTLERMIEIDYIIN--LFSKVKVNKMKQLIRTILRSSVYQMKYMDSVPDSAICNEAV 107 Query: 132 CIAHDFFYGDEPKFINAVLDKVSR 155 +A + + F+N VL +SR Sbjct: 108 KLAGKRGFVNLKGFVNGVLRNISR 131 >gi|261392944|emb|CAX50529.1| N utilization substance protein B (NusB protein) [Neisseria meningitidis 8013] gi|325127809|gb|EGC50717.1| transcription antitermination factor NusB [Neisseria meningitidis N1568] Length = 141 Score = 39.7 bits (91), Expect = 0.13, Method: Compositional matrix adjust. Identities = 46/159 (28%), Positives = 65/159 (40%), Gaps = 26/159 (16%) Query: 10 LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF 69 +K + RR +R AVQA+YQ I + EI + R +D + D E F Sbjct: 1 MKTARRR--SRELAVQAVYQSLINRTAAPEIA---KNIREMSD--------FAKADEELF 47 Query: 70 RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVL----ELIECHSVPVEV 125 + G I L R + L I RA +L EL P V Sbjct: 48 NKLFFGTQTNAAEYIQQIRPLL------DRDEKDLNPIERAVLLTACHELSAMPETPYPV 101 Query: 126 IISEYVCIAHDFFYGDEPKFINAVLDKVS---RKEEIKR 161 II+E + + F D KF+N +LDK++ R +E KR Sbjct: 102 IINEAIEVTKTFGGTDGHKFVNGILDKLAAQIRPDEPKR 140 >gi|240013567|ref|ZP_04720480.1| transcription antitermination protein NusB [Neisseria gonorrhoeae DGI18] gi|240016006|ref|ZP_04722546.1| transcription antitermination protein NusB [Neisseria gonorrhoeae FA6140] gi|240120636|ref|ZP_04733598.1| transcription antitermination protein NusB [Neisseria gonorrhoeae PID24-1] Length = 161 Score = 39.7 bits (91), Expect = 0.13, Method: Compositional matrix adjust. Identities = 48/170 (28%), Positives = 72/170 (42%), Gaps = 29/170 (17%) Query: 2 TIQDNK---KDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVE 58 T+ N+ K +K + RR +R AVQA+YQ I + EI + R +D Sbjct: 10 TVPPNRFKEKIMKTTRRR--SRELAVQAVYQSLINRTAAPEIA---KNIREMSD------ 58 Query: 59 SVYLHVDLEWFRVIIHGVM----DRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLE 114 + D E F + G D Q I L+ + L+ I ++L E Sbjct: 59 --FAKADEELFNKLFFGTQTNAADYIQKIRPLLDRDEKD------LNPIERAVLLTACHE 110 Query: 115 LIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVS---RKEEIKR 161 L P VII+E + + F D KF+N +LDK++ R +E KR Sbjct: 111 LSAMPETPYPVIINEAIEVTKTFGGTDGHKFVNGILDKLAAQIRPDEPKR 160 >gi|301320813|gb|ADK69456.1| transcription antitermination factor NusB [Mycoplasma mycoides subsp. mycoides SC str. Gladysdale] Length = 132 Score = 39.7 bits (91), Expect = 0.13, Method: Compositional matrix adjust. Identities = 28/79 (35%), Positives = 43/79 (54%), Gaps = 13/79 (16%) Query: 81 QHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVC----IAHD 136 HI++ ISS W + R+ ++ +IL G E++ ++ P V I+E V I D Sbjct: 63 NHININISSS----WKWDRMPAVIRAILIVGTYEILYTNT-PKSVTINEMVKYVKEIEPD 117 Query: 137 FFYGDEPKFINAVLDKVSR 155 F Y KF+NAVLDK+ + Sbjct: 118 FDY----KFVNAVLDKLVK 132 >gi|154173840|ref|YP_001407739.1| transcription antitermination protein NusB [Campylobacter curvus 525.92] gi|166215674|sp|A7GWZ7|NUSB_CAMC5 RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|112803582|gb|EAU00926.1| transcription antitermination factor NusB [Campylobacter curvus 525.92] Length = 131 Score = 39.7 bits (91), Expect = 0.13, Method: Compositional matrix adjust. Identities = 25/73 (34%), Positives = 39/73 (53%), Gaps = 2/73 (2%) Query: 79 RKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFF 138 +K +D ++ L EK R+ ++ +ILR GV E+ + VII+E + +A + Sbjct: 55 KKGELDEILKPYLKEK-DIERIGIVELAILRLGVYEM-KFTGTDKAVIINEAIELAKELG 112 Query: 139 YGDEPKFINAVLD 151 PKFIN VLD Sbjct: 113 GDSAPKFINGVLD 125 >gi|282895593|ref|ZP_06303727.1| NusB antitermination factor [Raphidiopsis brookii D9] gi|281199433|gb|EFA74297.1| NusB antitermination factor [Raphidiopsis brookii D9] Length = 213 Score = 39.7 bits (91), Expect = 0.14, Method: Compositional matrix adjust. Identities = 27/91 (29%), Positives = 49/91 (53%), Gaps = 2/91 (2%) Query: 68 WFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVII 127 + + I+ V + + +D +IS L + W +RL I IL+ V E+ + VP + I Sbjct: 123 YAKEIVVTVDENRTILDQIISQALVD-WQVTRLAQIDRDILQIAVAEM-KFMEVPPSIAI 180 Query: 128 SEYVCIAHDFFYGDEPKFINAVLDKVSRKEE 158 +E V +A + D +FIN VL +V+ +++ Sbjct: 181 NEAVELAKRYSGDDGHRFINGVLRRVTEQKQ 211 >gi|312880056|ref|ZP_07739856.1| NusB antitermination factor [Aminomonas paucivorans DSM 12260] gi|310783347|gb|EFQ23745.1| NusB antitermination factor [Aminomonas paucivorans DSM 12260] Length = 156 Score = 39.7 bits (91), Expect = 0.14, Method: Compositional matrix adjust. Identities = 29/86 (33%), Positives = 43/86 (50%), Gaps = 2/86 (2%) Query: 76 VMDR-KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134 +DR K ID L+ L W R+ + + +R +LE + VP+ V ISE V +A Sbjct: 58 ALDRHKGAIDELLREQLV-GWRPERMVAVDRAAIRLALLEGVFEKLVPLAVAISEAVELA 116 Query: 135 HDFFYGDEPKFINAVLDKVSRKEEIK 160 F D +F+N VL ++ R E K Sbjct: 117 KTFGTEDSGRFVNGVLGRIVRSLEPK 142 >gi|304316972|ref|YP_003852117.1| sun protein [Thermoanaerobacterium thermosaccharolyticum DSM 571] gi|302778474|gb|ADL69033.1| sun protein [Thermoanaerobacterium thermosaccharolyticum DSM 571] Length = 447 Score = 39.7 bits (91), Expect = 0.14, Method: Compositional matrix adjust. Identities = 34/131 (25%), Positives = 61/131 (46%), Gaps = 13/131 (9%) Query: 20 RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79 R A + LY+I + + ++++Y D DVE ++ + I+ G ++R Sbjct: 4 RNIAFKILYEILVKKGYSNIVLNKY----LNNDGIEDVEKSFI-------KEIVFGTIER 52 Query: 80 KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139 K +D +I C T+ ++D + IL G+ +L+ VP I+E V + + Sbjct: 53 KYTLDRIIDYCSTK--DIKKIDNKVLIILEMGLFQLMYMDKVPDYAAINESVNLTKEHVG 110 Query: 140 GDEPKFINAVL 150 KF+NAVL Sbjct: 111 KYASKFVNAVL 121 >gi|171920577|ref|ZP_02931840.1| transcription antitermination factor NusB [Ureaplasma urealyticum serovar 13 str. ATCC 33698] gi|185179037|ref|ZP_02964782.1| transcription antitermination factor NusB [Ureaplasma urealyticum serovar 5 str. ATCC 27817] gi|188024190|ref|ZP_02996905.1| transcription antitermination factor NusB [Ureaplasma urealyticum serovar 7 str. ATCC 27819] gi|188518637|ref|ZP_03004078.1| transcription antitermination factor NusB [Ureaplasma urealyticum serovar 11 str. ATCC 33695] gi|188524479|ref|ZP_03004486.1| transcription antitermination factor NusB [Ureaplasma urealyticum serovar 12 str. ATCC 33696] gi|195867654|ref|ZP_03079656.1| transcription antitermination factor NusB [Ureaplasma urealyticum serovar 9 str. ATCC 33175] gi|198273709|ref|ZP_03206244.1| transcription antitermination factor NusB [Ureaplasma urealyticum serovar 4 str. ATCC 27816] gi|209554511|ref|YP_002284699.1| transcription antitermination factor NusB [Ureaplasma urealyticum serovar 10 str. ATCC 33699] gi|225550715|ref|ZP_03771664.1| transcription antitermination factor NusB [Ureaplasma urealyticum serovar 2 str. ATCC 27814] gi|225551022|ref|ZP_03771968.1| transcription antitermination factor NusB [Ureaplasma urealyticum serovar 8 str. ATCC 27618] gi|171903281|gb|EDT49570.1| transcription antitermination factor NusB [Ureaplasma urealyticum serovar 13 str. ATCC 33698] gi|184209018|gb|EDU06061.1| transcription antitermination factor NusB [Ureaplasma urealyticum serovar 5 str. ATCC 27817] gi|188018832|gb|EDU56872.1| transcription antitermination factor NusB [Ureaplasma urealyticum serovar 7 str. ATCC 27819] gi|188997767|gb|EDU66864.1| transcription antitermination factor NusB [Ureaplasma urealyticum serovar 11 str. ATCC 33695] gi|195659568|gb|EDX52948.1| transcription antitermination factor NusB [Ureaplasma urealyticum serovar 12 str. ATCC 33696] gi|195660711|gb|EDX53966.1| transcription antitermination factor NusB [Ureaplasma urealyticum serovar 9 str. ATCC 33175] gi|198249737|gb|EDY74518.1| transcription antitermination factor NusB [Ureaplasma urealyticum serovar 4 str. ATCC 27816] gi|209542012|gb|ACI60241.1| transcription antitermination factor NusB [Ureaplasma urealyticum serovar 10 str. ATCC 33699] gi|225378837|gb|EEH01202.1| transcription antitermination factor NusB [Ureaplasma urealyticum serovar 8 str. ATCC 27618] gi|225379869|gb|EEH02231.1| transcription antitermination factor NusB [Ureaplasma urealyticum serovar 2 str. ATCC 27814] Length = 127 Score = 39.7 bits (91), Expect = 0.14, Method: Compositional matrix adjust. Identities = 22/92 (23%), Positives = 49/92 (53%), Gaps = 2/92 (2%) Query: 62 LHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSV 121 +D+ W V + ++D + + +I + + W+F RL + ++L + E + + Sbjct: 36 FELDVSWLSVSEY-ILDNCEQLIKMIKPFINKDWTFERLSYVEQALLLSAYGEYLVLKT- 93 Query: 122 PVEVIISEYVCIAHDFFYGDEPKFINAVLDKV 153 P ++II + + H++ + KFINA+LD++ Sbjct: 94 PKKIIIDQTLITTHNYSNDESYKFINAILDQL 125 >gi|328479786|gb|EGF48904.1| transcription antitermination protein NusB [Lactobacillus rhamnosus MTCC 5462] Length = 145 Score = 39.7 bits (91), Expect = 0.15, Method: Compositional matrix adjust. Identities = 24/90 (26%), Positives = 44/90 (48%), Gaps = 6/90 (6%) Query: 52 DTELDVESVYLHV---DLE---WFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILC 105 + E D +VY V D E + ++ GV+ + +D ++ L + W+ SRL Sbjct: 41 NPEADKNAVYAEVLPKDTEVPSYLTALVEGVLANQAALDAALTPQLKKGWTLSRLTKPDL 100 Query: 106 SILRAGVLELIECHSVPVEVIISEYVCIAH 135 ILR G+ E+ ++P I+E + +A+ Sbjct: 101 IILRLGLYEIRYEEAMPEAAAINEAINLAN 130 >gi|15676581|ref|NP_273725.1| transcription antitermination protein NusB [Neisseria meningitidis MC58] gi|261377912|ref|ZP_05982485.1| transcription antitermination factor NusB [Neisseria cinerea ATCC 14685] gi|261401063|ref|ZP_05987188.1| transcription antitermination factor NusB [Neisseria lactamica ATCC 23970] gi|304388064|ref|ZP_07370193.1| transcription antitermination factor NusB [Neisseria meningitidis ATCC 13091] gi|22095969|sp|Q9K0D0|NUSB_NEIMB RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|7225910|gb|AAF41101.1| N utilization substance protein B [Neisseria meningitidis MC58] gi|254673604|emb|CBA09124.1| N utilization substance protein B [Neisseria meningitidis alpha275] gi|269145771|gb|EEZ72189.1| transcription antitermination factor NusB [Neisseria cinerea ATCC 14685] gi|269208952|gb|EEZ75407.1| transcription antitermination factor NusB [Neisseria lactamica ATCC 23970] gi|304337921|gb|EFM04061.1| transcription antitermination factor NusB [Neisseria meningitidis ATCC 13091] gi|316983655|gb|EFV62636.1| transcription antitermination factor NusB [Neisseria meningitidis H44/76] gi|325129787|gb|EGC52595.1| transcription antitermination factor NusB [Neisseria meningitidis OX99.30304] gi|325133802|gb|EGC56458.1| transcription antitermination factor NusB [Neisseria meningitidis M13399] gi|325139868|gb|EGC62399.1| transcription antitermination factor NusB [Neisseria meningitidis CU385] gi|325143929|gb|EGC66239.1| transcription antitermination factor NusB [Neisseria meningitidis M01-240013] gi|325200631|gb|ADY96086.1| transcription antitermination factor NusB [Neisseria meningitidis H44/76] gi|325203770|gb|ADY99223.1| transcription antitermination factor NusB [Neisseria meningitidis M01-240355] gi|325206473|gb|ADZ01926.1| transcription antitermination factor NusB [Neisseria meningitidis M04-240196] Length = 141 Score = 39.7 bits (91), Expect = 0.15, Method: Compositional matrix adjust. Identities = 46/159 (28%), Positives = 65/159 (40%), Gaps = 26/159 (16%) Query: 10 LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF 69 +K + RR +R AVQA+YQ I + EI + R +D + D E F Sbjct: 1 MKTARRR--SRELAVQAVYQSLINRTAAPEIA---KNIREMSD--------FAKADEELF 47 Query: 70 RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVL----ELIECHSVPVEV 125 + G I L R + L I RA +L EL P V Sbjct: 48 NKLFFGTQTNAAEYIRQIRPLL------DRDEKDLNPIERAVLLTACHELSAMPETPYPV 101 Query: 126 IISEYVCIAHDFFYGDEPKFINAVLDKVS---RKEEIKR 161 II+E + + F D KF+N +LDK++ R +E KR Sbjct: 102 IINEAIEVTKTFGGTDGHKFVNGILDKLAAQIRPDEPKR 140 >gi|317056478|ref|YP_004104945.1| sun protein [Ruminococcus albus 7] gi|315448747|gb|ADU22311.1| sun protein [Ruminococcus albus 7] Length = 431 Score = 39.7 bits (91), Expect = 0.15, Method: Compositional matrix adjust. Identities = 27/99 (27%), Positives = 50/99 (50%), Gaps = 3/99 (3%) Query: 65 DLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVE 124 D ++ + +GV++R+ +D +I K S+L+ L +ILR G+ +L SVP Sbjct: 39 DKKFIAALFYGVIERRLTLDAIIVDL--SKNPKSKLNYTLRNILRCGLYQLKYMDSVPDN 96 Query: 125 VIISEYVCIAHDFFYGDEPKFINAVLDK-VSRKEEIKRS 162 + E V +A P F N +L + + R +E+ ++ Sbjct: 97 AAVDESVELAKKCRNPAAPGFTNGLLREFIRRSKELPKT 135 >gi|291276400|ref|YP_003516172.1| transcription termination protein [Helicobacter mustelae 12198] gi|290963594|emb|CBG39426.1| transcription termination protein [Helicobacter mustelae 12198] Length = 130 Score = 39.7 bits (91), Expect = 0.15, Method: Compositional matrix adjust. Identities = 26/86 (30%), Positives = 46/86 (53%), Gaps = 6/86 (6%) Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131 + G++ +D I+ L + W F +L + +ILR G E++ C + ++I+E + Sbjct: 49 LFDGILKNLDLLDEQITRHLKD-WEFKKLGGMERAILRLGAYEIL-CCQIDKPIVINEAI 106 Query: 132 CIAHDFFYGDE--PKFINAVLDKVSR 155 +A YG+E PK IN VLD + + Sbjct: 107 ELAKS--YGEEMAPKLINGVLDSLKK 130 >gi|148244614|ref|YP_001219308.1| N utilization substance protein B [Candidatus Vesicomyosocius okutanii HA] gi|146326441|dbj|BAF61584.1| N utilization substance protein B [Candidatus Vesicomyosocius okutanii HA] Length = 141 Score = 39.7 bits (91), Expect = 0.15, Method: Compositional matrix adjust. Identities = 38/139 (27%), Positives = 62/139 (44%), Gaps = 18/139 (12%) Query: 19 ARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMD 78 R +QALYQ + G +I +F + + V+ F + +++ Sbjct: 10 TRERVIQALYQYLVSGGEVFQI-----EQQFLNQKQGKISKVF-------FSDLFINILE 57 Query: 79 RKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFF 138 + +D LI+S ++ L + SIL G EL VP +V+I+E + +A Sbjct: 58 NRFVLDELITSTISRGTE--ELGSVEHSILYLGTFELKFNSEVPYKVVINESLALAK--L 113 Query: 139 YGDEP--KFINAVLDKVSR 155 YG E K IN LDK++R Sbjct: 114 YGAEGSYKLINVSLDKLAR 132 >gi|291458605|ref|ZP_06597995.1| ribosomal RNA small subunit methyltransferase B [Oribacterium sp. oral taxon 078 str. F0262] gi|291419138|gb|EFE92857.1| ribosomal RNA small subunit methyltransferase B [Oribacterium sp. oral taxon 078 str. F0262] Length = 427 Score = 39.7 bits (91), Expect = 0.16, Method: Compositional matrix adjust. Identities = 21/94 (22%), Positives = 47/94 (50%), Gaps = 2/94 (2%) Query: 65 DLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVE 124 D + +++G ++R +D + C + ++ +L ++LR G +++ VP Sbjct: 55 DRAFLTRLVNGTVERSVTLDYFLDRC--SRLKVKKMRPLLRTLLRMGSFQILFSDRVPDS 112 Query: 125 VIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEE 158 ++E V ++H F+NAVL ++S ++E Sbjct: 113 AAVNESVKLSHRRGLSGLSSFVNAVLRRISGEKE 146 >gi|269218512|ref|ZP_06162366.1| ribosomal RNA small subunit methyltransferase B [Actinomyces sp. oral taxon 848 str. F0332] gi|269211623|gb|EEZ77963.1| ribosomal RNA small subunit methyltransferase B [Actinomyces sp. oral taxon 848 str. F0332] Length = 534 Score = 39.3 bits (90), Expect = 0.17, Method: Composition-based stats. Identities = 31/107 (28%), Positives = 50/107 (46%), Gaps = 6/107 (5%) Query: 64 VDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPV 123 +D + + +G + + D +IS C + + +D + +LR G +L+ + P Sbjct: 103 LDAAYATNLCYGTLRMRGRWDAIISRCAKGRRIYD-IDPPVLDLLRMGCEQLLAMETPP- 160 Query: 124 EVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKE----EIKRSGCVS 166 I E V IA +FF F+NAVL ++S K EI RS S Sbjct: 161 HAAIHETVVIARNFFGQGTGGFVNAVLRRISEKAGQWPEIVRSSTAS 207 >gi|113868812|ref|YP_727301.1| transcription antitermination protein NusB [Ralstonia eutropha H16] gi|122946671|sp|Q0K7T8|NUSB_RALEH RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|113527588|emb|CAJ93933.1| transcription termination factor [Ralstonia eutropha H16] Length = 172 Score = 39.3 bits (90), Expect = 0.17, Method: Compositional matrix adjust. Identities = 24/94 (25%), Positives = 44/94 (46%), Gaps = 2/94 (2%) Query: 61 YLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHS 120 + D E F +++G + + + L K L + + L G EL+ C Sbjct: 69 FNKADREHFDALLNGAVREEARLTAAFEPFLDRK--VEELSPVERAALLVGSYELVHCLD 126 Query: 121 VPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVS 154 +P +V+I+E V + F + K++N VLDK++ Sbjct: 127 IPYKVVINEAVELTKTFGGVEGYKYVNGVLDKLA 160 >gi|148654081|ref|YP_001281174.1| NusB antitermination factor [Psychrobacter sp. PRwf-1] gi|148573165|gb|ABQ95224.1| NusB antitermination factor [Psychrobacter sp. PRwf-1] Length = 252 Score = 39.3 bits (90), Expect = 0.17, Method: Compositional matrix adjust. Identities = 23/91 (25%), Positives = 48/91 (52%), Gaps = 2/91 (2%) Query: 64 VDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPV 123 V L ++ ++ + ++ ++ LI+ L + ++DM+ ++L G EL +P Sbjct: 87 VHLGYYHTLMREIPEQITDLEALIAQHLDR--AIDKIDMVEHAVLLIGAYELKNSLHIPY 144 Query: 124 EVIISEYVCIAHDFFYGDEPKFINAVLDKVS 154 +V++ E + + F D K INAV+DK++ Sbjct: 145 KVVLDEAMKLNTHFGATDAHKLINAVMDKLA 175 >gi|42560661|ref|NP_975112.1| transcription termination factor nusB [Mycoplasma mycoides subsp. mycoides SC str. PG1] gi|42492157|emb|CAE76754.1| transcription termination factor nusB [Mycoplasma mycoides subsp. mycoides SC str. PG1] Length = 132 Score = 39.3 bits (90), Expect = 0.17, Method: Compositional matrix adjust. Identities = 28/79 (35%), Positives = 43/79 (54%), Gaps = 13/79 (16%) Query: 81 QHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVC----IAHD 136 HI++ ISS W + R+ ++ +IL G E++ ++ P V I+E V I D Sbjct: 63 NHININISSS----WKWDRIPAVIRAILIVGTYEILYTNT-PKSVTINEMVKYVKEIEPD 117 Query: 137 FFYGDEPKFINAVLDKVSR 155 F Y KF+NAVLDK+ + Sbjct: 118 FDY----KFVNAVLDKLVK 132 >gi|281420711|ref|ZP_06251710.1| NusB family protein [Prevotella copri DSM 18205] gi|281405484|gb|EFB36164.1| NusB family protein [Prevotella copri DSM 18205] Length = 355 Score = 39.3 bits (90), Expect = 0.17, Method: Compositional matrix adjust. Identities = 18/63 (28%), Positives = 33/63 (52%) Query: 94 KWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKV 153 W FSRL + I++ + E++ +P V I+EYV +A + ++N +LD + Sbjct: 242 NWDFSRLAYMDVIIMQIAIAEVMNFPGIPATVTINEYVELAKAYSTPRSGGYVNGMLDSI 301 Query: 154 SRK 156 R+ Sbjct: 302 CRE 304 >gi|323699091|ref|ZP_08111003.1| NusB antitermination factor [Desulfovibrio sp. ND132] gi|323459023|gb|EGB14888.1| NusB antitermination factor [Desulfovibrio desulfuricans ND132] Length = 149 Score = 39.3 bits (90), Expect = 0.18, Method: Compositional matrix adjust. Identities = 34/144 (23%), Positives = 60/144 (41%), Gaps = 16/144 (11%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLE----WFRV 71 R + R A Q LY + DT D+ + + + E + R Sbjct: 13 RRVGRTLAFQVLYSTHFLDKENP----------LDMDTLFDLNPMVVEQESETARAFARD 62 Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131 ++ GV ID I ++ W R+ M+ SILR + E++ +PV+ I+E + Sbjct: 63 LVRGVSVNLHDIDRTIEEH-SQHWKIERIAMVELSILRLSLYEML-FTDIPVKAAINEAI 120 Query: 132 CIAHDFFYGDEPKFINAVLDKVSR 155 ++ F F+N +LD V++ Sbjct: 121 ELSKTFGDDKSRSFVNGILDGVAK 144 >gi|301167989|emb|CBW27575.1| putative N utilisation protein [Bacteriovorax marinus SJ] Length = 157 Score = 39.3 bits (90), Expect = 0.18, Method: Compositional matrix adjust. Identities = 26/84 (30%), Positives = 40/84 (47%), Gaps = 1/84 (1%) Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131 +I GV K ++ IS L K ++L+ I ++L G E+ + P V+I E V Sbjct: 75 LIDGVFTNKASLEDEISKHL-RKRKINQLEKIDYALLMLGCYEIQNVDATPKAVVIDEMV 133 Query: 132 CIAHDFFYGDEPKFINAVLDKVSR 155 +A F D FIN LD + + Sbjct: 134 NLARKFGTADTYSFINGTLDSIGK 157 >gi|325279484|ref|YP_004252026.1| NusB antitermination factor [Odoribacter splanchnicus DSM 20712] gi|324311293|gb|ADY31846.1| NusB antitermination factor [Odoribacter splanchnicus DSM 20712] Length = 320 Score = 39.3 bits (90), Expect = 0.18, Method: Compositional matrix adjust. Identities = 24/89 (26%), Positives = 41/89 (46%), Gaps = 1/89 (1%) Query: 65 DLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVE 124 D E+ R ++ + + ++ I T W R+ + I+ + EL S+PV+ Sbjct: 209 DFEYARTLMRKAF-YEYNANMEIIDKFTYNWELDRISEMDKLIMSCAISELKHFPSIPVK 267 Query: 125 VIISEYVCIAHDFFYGDEPKFINAVLDKV 153 V + EY+ I+ + FIN VLDK Sbjct: 268 VTLDEYIEISKTYSSPKSGAFINGVLDKA 296 >gi|261337964|ref|ZP_05965848.1| transcription antitermination factor NusB [Bifidobacterium gallicum DSM 20093] gi|270277459|gb|EFA23313.1| transcription antitermination factor NusB [Bifidobacterium gallicum DSM 20093] Length = 149 Score = 39.3 bits (90), Expect = 0.19, Method: Compositional matrix adjust. Identities = 24/79 (30%), Positives = 40/79 (50%), Gaps = 1/79 (1%) Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131 I+ GV D ++ +D +I+ T W R+ +I +ILR E+I +P +V I E + Sbjct: 48 IVEGVADNRKDLDRIINEHST-GWKVWRMPVIDRNILRIAAWEIIHNDEIPDKVAIDEAL 106 Query: 132 CIAHDFFYGDEPKFINAVL 150 +A + FI+ VL Sbjct: 107 NLAKTLSDDESLGFIHGVL 125 >gi|51243976|ref|YP_063860.1| SUN protein (Fmu protein) [Desulfotalea psychrophila LSv54] gi|50875013|emb|CAG34853.1| related to SUN protein (FMU protein) [Desulfotalea psychrophila LSv54] Length = 454 Score = 39.3 bits (90), Expect = 0.19, Method: Compositional matrix adjust. Identities = 27/121 (22%), Positives = 56/121 (46%), Gaps = 17/121 (14%) Query: 48 RFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSI 107 + C +L+ L +++ + GV+ ++Q++D+L+ T + +LD + Sbjct: 29 KLCQQKQLNPRERSLAMNM------VFGVLRKRQYLDILLRKLSTVR--LKKLDPFVHQA 80 Query: 108 LRAGVLELIECHSVPVEVIISEYV-----CIAHDFFYGDEPKFINAVLDKVSRKEEIKRS 162 L G+ +L S+P I++E V H +G F+N +L +R++E + Sbjct: 81 LTVGLYQLFFLDSIPESAIVNEAVNSCKTAKVHKRLHG----FVNGILRNATRQKEALAN 136 Query: 163 G 163 G Sbjct: 137 G 137 >gi|227499084|ref|ZP_03929221.1| NusB antitermination factor [Acidaminococcus sp. D21] gi|226904533|gb|EEH90451.1| NusB antitermination factor [Acidaminococcus sp. D21] Length = 140 Score = 39.3 bits (90), Expect = 0.19, Method: Compositional matrix adjust. Identities = 34/140 (24%), Positives = 66/140 (47%), Gaps = 11/140 (7%) Query: 19 ARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLE-WFRVIIHGVM 77 AR A+++L+ +D T +S +T + + E ++ L D E + ++ G Sbjct: 6 ARTLAMKSLFSLDF-----TTDVSPLDTVKALLEDE---DTPALPKDDENYAAALVTGTR 57 Query: 78 DRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLEL-IECHSVPVEVIISEYVCIAHD 136 + + ID ++ + L+++W R+ + ++LR E+ + + ISE V IA Sbjct: 58 EHLEAIDSVLDT-LSDEWKVKRMAGVDRNLLRMAAFEMYFSPQKIAPAIAISEAVEIAKI 116 Query: 137 FFYGDEPKFINAVLDKVSRK 156 + D P FIN +L + R Sbjct: 117 YGGDDSPHFINGLLGTLVRN 136 >gi|300775935|ref|ZP_07085795.1| conserved hypothetical protein [Chryseobacterium gleum ATCC 35910] gi|300505485|gb|EFK36623.1| conserved hypothetical protein [Chryseobacterium gleum ATCC 35910] Length = 301 Score = 39.3 bits (90), Expect = 0.19, Method: Compositional matrix adjust. Identities = 22/60 (36%), Positives = 29/60 (48%) Query: 93 EKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDK 152 E W R+ ++ IL + EL P VII+EY+ IA F FIN +LDK Sbjct: 234 ENWDLERVSLMDKVILSTAIAELDNFAFTPSRVIINEYIEIAKVFATDRSNIFINGILDK 293 >gi|332975638|gb|EGK12527.1| NusB antitermination factor [Psychrobacter sp. 1501(2011)] Length = 244 Score = 39.3 bits (90), Expect = 0.19, Method: Compositional matrix adjust. Identities = 23/91 (25%), Positives = 48/91 (52%), Gaps = 2/91 (2%) Query: 64 VDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPV 123 V L ++ ++ + ++ ++ LI+ L + ++DM+ ++L G EL +P Sbjct: 79 VHLGYYHTLMREIPEQIDELEALIAEHLDRQ--IDQIDMVEHAVLLIGAYELKHSLHIPY 136 Query: 124 EVIISEYVCIAHDFFYGDEPKFINAVLDKVS 154 +V++ E + + F D K INAV+DK++ Sbjct: 137 KVVLDEAMKLNTHFGATDAHKLINAVMDKLA 167 >gi|303239358|ref|ZP_07325886.1| sun protein [Acetivibrio cellulolyticus CD2] gi|302593144|gb|EFL62864.1| sun protein [Acetivibrio cellulolyticus CD2] Length = 450 Score = 39.3 bits (90), Expect = 0.20, Method: Compositional matrix adjust. Identities = 30/138 (21%), Positives = 64/138 (46%), Gaps = 13/138 (9%) Query: 18 IARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVM 77 + R A++ LY I+ G + +++Y D L +D + +++G + Sbjct: 5 LPRETALKILYDINKSGAYSNIALNKY-----LEDKALS------GLDKAFITELVYGTL 53 Query: 78 DRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDF 137 + ID +I + K ++L + +ILR GV +++ +P +E V +A + Sbjct: 54 KWRLSIDYIIDQFSSVK--INKLSPWILNILRLGVYQIVYMSKIPESAACNESVNLAKRY 111 Query: 138 FYGDEPKFINAVLDKVSR 155 + +++NA+L V+R Sbjct: 112 GHSASSRYVNAMLRNVAR 129 >gi|154508791|ref|ZP_02044433.1| hypothetical protein ACTODO_01300 [Actinomyces odontolyticus ATCC 17982] gi|153798425|gb|EDN80845.1| hypothetical protein ACTODO_01300 [Actinomyces odontolyticus ATCC 17982] Length = 490 Score = 39.3 bits (90), Expect = 0.20, Method: Compositional matrix adjust. Identities = 25/98 (25%), Positives = 47/98 (47%), Gaps = 3/98 (3%) Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131 ++HG + +D +IS + + LD +LR G +L++ VP +S V Sbjct: 65 LVHGTLRAIGRLDWVISRHIDRP--LADLDPRALVVLRMGAHQLLDMR-VPDHAAVSATV 121 Query: 132 CIAHDFFYGDEPKFINAVLDKVSRKEEIKRSGCVSAIT 169 +A + +F+NAVL ++R++ +R + AI Sbjct: 122 DVAREHLTDGPVRFVNAVLRSITREDPSEREAAMDAIA 159 >gi|309775471|ref|ZP_07670473.1| N utilization substance protein B [Erysipelotrichaceae bacterium 3_1_53] gi|308916767|gb|EFP62505.1| N utilization substance protein B [Erysipelotrichaceae bacterium 3_1_53] Length = 81 Score = 39.3 bits (90), Expect = 0.20, Method: Compositional matrix adjust. Identities = 25/81 (30%), Positives = 41/81 (50%), Gaps = 2/81 (2%) Query: 73 IHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVC 132 I V R +ID I+ L + W+F RL + +IL EL + + P ++I E V Sbjct: 3 IDAVAYRDVYIDK-INEALRQDWTFDRLGFVEQAILLMAACEL-DLETAPKAIVIDEAVT 60 Query: 133 IAHDFFYGDEPKFINAVLDKV 153 +A + + + IN VLD++ Sbjct: 61 LAKKYCDDETYRLINGVLDRL 81 >gi|331001107|ref|ZP_08324738.1| transcription antitermination factor NusB [Parasutterella excrementihominis YIT 11859] gi|329569412|gb|EGG51190.1| transcription antitermination factor NusB [Parasutterella excrementihominis YIT 11859] Length = 159 Score = 39.3 bits (90), Expect = 0.20, Method: Compositional matrix adjust. Identities = 30/98 (30%), Positives = 45/98 (45%), Gaps = 19/98 (19%) Query: 64 VDLEWFRVIIHGVMDR--------KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLEL 115 D ++R ++HGV + HID ++S L I +IL G EL Sbjct: 58 ADQAFYRELLHGVTEEFPSLEASYAPHIDREVTS----------LSPIERAILLIGTYEL 107 Query: 116 IECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKV 153 + P V+I+E V +A F D K++N VLDK+ Sbjct: 108 KNT-TTPYRVVINEAVELAKSFGGSDGFKYVNGVLDKM 144 >gi|293192811|ref|ZP_06609706.1| ribosomal RNA small subunit methyltransferase B [Actinomyces odontolyticus F0309] gi|292820058|gb|EFF79056.1| ribosomal RNA small subunit methyltransferase B [Actinomyces odontolyticus F0309] Length = 490 Score = 39.3 bits (90), Expect = 0.20, Method: Compositional matrix adjust. Identities = 25/98 (25%), Positives = 47/98 (47%), Gaps = 3/98 (3%) Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131 ++HG + +D +IS + + LD +LR G +L++ VP +S V Sbjct: 65 LVHGTLRAIGRLDWVISRHIDRP--LADLDPRALVVLRMGTHQLLDMR-VPDHAAVSATV 121 Query: 132 CIAHDFFYGDEPKFINAVLDKVSRKEEIKRSGCVSAIT 169 +A + +F+NAVL ++R++ +R + AI Sbjct: 122 DVAREHLTDGPVRFVNAVLRSITREDPSEREAAMDAIA 159 >gi|312898700|ref|ZP_07758090.1| ribosomal RNA small subunit methyltransferase B [Megasphaera micronuciformis F0359] gi|310620619|gb|EFQ04189.1| ribosomal RNA small subunit methyltransferase B [Megasphaera micronuciformis F0359] Length = 441 Score = 39.3 bits (90), Expect = 0.21, Method: Compositional matrix adjust. Identities = 24/94 (25%), Positives = 46/94 (48%), Gaps = 2/94 (2%) Query: 65 DLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVE 124 D ++ +++G + ++D +I + K + LD + ++LR G+ +L VP Sbjct: 38 DRRFYTELVYGTLRSLNYVDYIIGILSSRKKN--SLDPVCLAVLRMGLYQLFFMDKVPPS 95 Query: 125 VIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEE 158 +E V +A F KF+NA+L R++E Sbjct: 96 AACNEAVKLARRFGNEGMAKFVNALLRNSLRQKE 129 >gi|255994610|ref|ZP_05427745.1| transcription antitermination factor NusB [Eubacterium saphenum ATCC 49989] gi|255993323|gb|EEU03412.1| transcription antitermination factor NusB [Eubacterium saphenum ATCC 49989] Length = 135 Score = 39.3 bits (90), Expect = 0.21, Method: Compositional matrix adjust. Identities = 35/145 (24%), Positives = 63/145 (43%), Gaps = 20/145 (13%) Query: 15 RRGIARLAAVQALYQIDIIGCS----TTEIISEYETYRFCADTELDVESVYLHVDLEWFR 70 R AR A+Q ++QI + + +I+S+Y+ + E Y+ R Sbjct: 4 NRSKARTIAMQIIFQIPVHKTTDKVLVDKILSDYKN--------IGKEEAYI-------R 48 Query: 71 VIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEY 130 + V D ID +++ + + W+ + + +ILR V E+ +P V ++E Sbjct: 49 EVFSLVTDNIDAIDAELNAKM-KGWTIDSIPKVDLAILRLAVAEICYAKDIPKVVAVNEA 107 Query: 131 VCIAHDFFYGDEPKFINAVLDKVSR 155 V IA F KFIN +L + + Sbjct: 108 VRIAKKFSDDKSAKFINGILANIGK 132 >gi|238917018|ref|YP_002930535.1| N utilization substance protein B [Eubacterium eligens ATCC 27750] gi|238872378|gb|ACR72088.1| N utilization substance protein B [Eubacterium eligens ATCC 27750] Length = 135 Score = 39.3 bits (90), Expect = 0.21, Method: Compositional matrix adjust. Identities = 21/65 (32%), Positives = 33/65 (50%), Gaps = 1/65 (1%) Query: 90 CLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDE-PKFINA 148 ++E W SRL SI+R V E++ +P V ++E V +A + D F+N Sbjct: 68 SVSEGWPTSRLGKTELSIMRLAVYEMLYDEDIPTNVALNEAVELAKKYGSADSTAAFVNG 127 Query: 149 VLDKV 153 VL K+ Sbjct: 128 VLGKL 132 >gi|256383931|gb|ACU78501.1| transcription antitermination factor NusB [Mycoplasma mycoides subsp. capri str. GM12] gi|256384763|gb|ACU79332.1| transcription antitermination factor NusB [Mycoplasma mycoides subsp. capri str. GM12] gi|296455225|gb|ADH21460.1| transcription antitermination factor NusB [synthetic Mycoplasma mycoides JCVI-syn1.0] Length = 132 Score = 38.9 bits (89), Expect = 0.21, Method: Compositional matrix adjust. Identities = 27/79 (34%), Positives = 43/79 (54%), Gaps = 13/79 (16%) Query: 81 QHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVC----IAHD 136 HI++ +SS W + R+ ++ +IL G E++ ++ P V I+E V I D Sbjct: 63 NHININVSSS----WKWDRIPAVIRAILIVGTYEILYTNT-PKPVTINEMVKYVKEIEPD 117 Query: 137 FFYGDEPKFINAVLDKVSR 155 F Y KF+NAVLDK+ + Sbjct: 118 FDY----KFVNAVLDKLVK 132 >gi|154483655|ref|ZP_02026103.1| hypothetical protein EUBVEN_01359 [Eubacterium ventriosum ATCC 27560] gi|149735565|gb|EDM51451.1| hypothetical protein EUBVEN_01359 [Eubacterium ventriosum ATCC 27560] Length = 131 Score = 38.9 bits (89), Expect = 0.21, Method: Compositional matrix adjust. Identities = 20/81 (24%), Positives = 39/81 (48%), Gaps = 1/81 (1%) Query: 73 IHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVC 132 + + ++ ID I+ KW+ R+ + +ILR E+ +P +V + + + Sbjct: 51 VDAIAEKIDEIDEAINKAAV-KWTTDRMSKVDLTILRLAYYEMKIDEDIPEKVAVDQAIE 109 Query: 133 IAHDFFYGDEPKFINAVLDKV 153 +A + D P F+N VL K+ Sbjct: 110 LAKKYGTDDSPSFVNGVLAKL 130 >gi|291520794|emb|CBK79087.1| transcription antitermination factor NusB [Coprococcus catus GD/7] Length = 131 Score = 38.9 bits (89), Expect = 0.22, Method: Compositional matrix adjust. Identities = 20/59 (33%), Positives = 31/59 (52%) Query: 95 WSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKV 153 W R+ + +I+R V E+ +PV V I+E V +A + + P FIN VL K+ Sbjct: 72 WQTERMGKVDLTIIRLAVYEMKYDDDIPVSVAINEAVELAKRYGSENSPAFINGVLAKM 130 >gi|307701058|ref|ZP_07638083.1| transcription antitermination factor NusB [Mobiluncus mulieris FB024-16] gi|307614053|gb|EFN93297.1| transcription antitermination factor NusB [Mobiluncus mulieris FB024-16] Length = 197 Score = 38.9 bits (89), Expect = 0.22, Method: Compositional matrix adjust. Identities = 23/91 (25%), Positives = 45/91 (49%), Gaps = 1/91 (1%) Query: 68 WFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVII 127 + R I+ GV + + ID +++ + WS R+ + +I+R E++ V V I Sbjct: 53 YAREILEGVAEHLERIDAALAT-YSRAWSLHRMPEVDLAIMRVATWEILFNPDVDGPVAI 111 Query: 128 SEYVCIAHDFFYGDEPKFINAVLDKVSRKEE 158 + + +A + + PKFIN +L ++ E Sbjct: 112 TAAMQLAAERSTDESPKFINGLLGTINDMRE 142 >gi|83319650|ref|YP_424054.1| N utilization substance protein B (nusB), putative [Mycoplasma capricolum subsp. capricolum ATCC 27343] gi|83283536|gb|ABC01468.1| N utilization substance protein B (nusB), putative [Mycoplasma capricolum subsp. capricolum ATCC 27343] Length = 132 Score = 38.9 bits (89), Expect = 0.22, Method: Compositional matrix adjust. Identities = 41/138 (29%), Positives = 63/138 (45%), Gaps = 22/138 (15%) Query: 20 RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79 R +QA Y+ ++ S I Y+ D DV++ L +I +D Sbjct: 11 RKLLIQAFYKYQLLNASIDYI------YQDVLD---DVQNFNNKQLLFEINLIAEKQVDL 61 Query: 80 KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVC----IAH 135 HI++ ISS W + R+ ++ +IL G E++ + P V I+E V I Sbjct: 62 INHININISS----NWKWDRIPAVIRAILIVGTYEILYTDT-PKPVTINEMVNYVKEIEP 116 Query: 136 DFFYGDEPKFINAVLDKV 153 DF Y KF+NAVLDK+ Sbjct: 117 DFDY----KFVNAVLDKI 130 >gi|33864549|ref|NP_896108.1| transcription antitermination protein NusB [Synechococcus sp. WH 8102] gi|33632072|emb|CAE06525.1| NusB family protein [Synechococcus sp. WH 8102] Length = 211 Score = 38.9 bits (89), Expect = 0.22, Method: Compositional matrix adjust. Identities = 29/88 (32%), Positives = 41/88 (46%), Gaps = 9/88 (10%) Query: 72 IIHGVMDR-------KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVE 124 I HG MDR + ID + S + E W SRL + ILR V++L + P Sbjct: 116 IRHGAMDRVSCVLNKRDRIDAELDSVM-EGWRLSRLPRLDRDILRLAVVDLRDL-GTPAP 173 Query: 125 VIISEYVCIAHDFFYGDEPKFINAVLDK 152 V SE V +A+ + + IN VL + Sbjct: 174 VAFSEAVELANRYSDEQGRRMINGVLRR 201 >gi|149928254|ref|ZP_01916498.1| transcription antitermination protein NusB [Limnobacter sp. MED105] gi|149823060|gb|EDM82301.1| transcription antitermination protein NusB [Limnobacter sp. MED105] Length = 162 Score = 38.9 bits (89), Expect = 0.22, Method: Compositional matrix adjust. Identities = 37/148 (25%), Positives = 60/148 (40%), Gaps = 16/148 (10%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 R +R A+Q LYQ + E+ D + + D E + ++HG Sbjct: 20 RRRSRELALQGLYQWFLNPTEVGEV-----------DAHIRDAPGFDKADREHYESLLHG 68 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135 + + + I + W L + ++L E+ +P V+I+E V + Sbjct: 69 SVHHLEDLMHQIQPFIDRPWG--ELSPVEKAVLVLASHEMNTHAEIPYRVVINEAVELTK 126 Query: 136 DFFYGDEPKFINAVLDKV---SRKEEIK 160 F D KF+N VLDKV +R EIK Sbjct: 127 TFGGTDAFKFVNGVLDKVAAQARDSEIK 154 >gi|158320645|ref|YP_001513152.1| NusB antitermination factor [Alkaliphilus oremlandii OhILAs] gi|166918801|sp|A8MFJ3|NUSB_ALKOO RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|158140844|gb|ABW19156.1| NusB antitermination factor [Alkaliphilus oremlandii OhILAs] Length = 138 Score = 38.9 bits (89), Expect = 0.22, Method: Compositional matrix adjust. Identities = 25/89 (28%), Positives = 43/89 (48%), Gaps = 5/89 (5%) Query: 73 IHGVMDRK----QHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIIS 128 IH V++ + ID +I T W +R+ + +ILR E+I +P V I+ Sbjct: 45 IHKVLNEAILNLEAIDSIIEEYST-SWKLNRIANVDLAILRLAFSEIIYMKDIPYRVSIN 103 Query: 129 EYVCIAHDFFYGDEPKFINAVLDKVSRKE 157 E + +A + + P F+N +L K +E Sbjct: 104 EAIELAKIYGSDETPNFVNGILGKYVEQE 132 >gi|160880647|ref|YP_001559615.1| NusB antitermination factor [Clostridium phytofermentans ISDg] gi|189035885|sp|A9KMC2|NUSB_CLOPH RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|160429313|gb|ABX42876.1| NusB antitermination factor [Clostridium phytofermentans ISDg] Length = 132 Score = 38.9 bits (89), Expect = 0.22, Method: Compositional matrix adjust. Identities = 21/87 (24%), Positives = 43/87 (49%), Gaps = 1/87 (1%) Query: 67 EWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVI 126 E+ V + ++ ID ++++ + W +R+ + +I+R E+ VPV+V Sbjct: 45 EYLNVRFDKINEKLGEIDTILANA-SSGWKLNRMGKVDLNIMRLATFEIRFDDEVPVKVA 103 Query: 127 ISEYVCIAHDFFYGDEPKFINAVLDKV 153 I+E + +A + F+N +L KV Sbjct: 104 INEAIELAKKYGGDSSASFVNGILAKV 130 >gi|297571422|ref|YP_003697196.1| NusB antitermination factor [Arcanobacterium haemolyticum DSM 20595] gi|296931769|gb|ADH92577.1| NusB antitermination factor [Arcanobacterium haemolyticum DSM 20595] Length = 159 Score = 38.9 bits (89), Expect = 0.23, Method: Compositional matrix adjust. Identities = 32/162 (19%), Positives = 77/162 (47%), Gaps = 15/162 (9%) Query: 1 MTIQDNKKDLKLSHRRG--IARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVE 58 M+ ++ + + + R+G + R A+ LY+ D+ G ++ S E + ++ ++ Sbjct: 1 MSNEERTQQRRNNGRKGRSLQRQRALDVLYEADVRGAEH-DLASLLEERSQLSPSQQPIQ 59 Query: 59 SVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIEC 118 ++ ++I+ + +D +I + + +W+ +R+ ++ ++LR G EL+ Sbjct: 60 --------KYGQLIVSTYAEWADDVDSMIEAA-SPQWALARMSVVDRNLLRIGATELMYL 110 Query: 119 HSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVS--RKEE 158 VP +++ E + DF F VL++++ R EE Sbjct: 111 D-VPTAIVVKEITALVRDFSTDKAVGFTMGVLNRIAEIRSEE 151 >gi|257068637|ref|YP_003154892.1| transcription antitermination factor NusB [Brachybacterium faecium DSM 4810] gi|256559455|gb|ACU85302.1| transcription antitermination factor NusB [Brachybacterium faecium DSM 4810] Length = 178 Score = 38.9 bits (89), Expect = 0.23, Method: Compositional matrix adjust. Identities = 33/141 (23%), Positives = 57/141 (40%), Gaps = 13/141 (9%) Query: 14 HRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVII 73 H R R+ A+ L++ D +++ E R A T L +W R ++ Sbjct: 42 HGRSRERIRAIDVLFEADAKRIDVLDVLQE-RLRRTAAQTPLP----------QWSRTLV 90 Query: 74 HGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVE-VIISEYVC 132 ID +++ + W R+ + +ILR G E++ II EY Sbjct: 91 ELYAPHAVDIDEDLATH-SRDWPLHRMPAVDRAILRLGAAEVLYGEEESRRGTIIGEYTK 149 Query: 133 IAHDFFYGDEPKFINAVLDKV 153 IA D P+F+N +L ++ Sbjct: 150 IAEVLSTDDSPRFVNGLLQRL 170 >gi|172036538|ref|YP_001803039.1| transcription antitermination protein NusB [Cyanothece sp. ATCC 51142] gi|254772628|sp|B1WXY6|NUSB_CYAA5 RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|171697992|gb|ACB50973.1| transcription termination factor, N utilization substance protein B [Cyanothece sp. ATCC 51142] Length = 209 Score = 38.9 bits (89), Expect = 0.23, Method: Compositional matrix adjust. Identities = 27/83 (32%), Positives = 43/83 (51%), Gaps = 2/83 (2%) Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131 +I + R++ ID + + L + W RL I ILR V E++ VP +V I+E V Sbjct: 123 LIGTINRRRKEIDEQLEAVLKD-WQLKRLAKIDQDILRLAVAEIL-FLDVPEKVSINEAV 180 Query: 132 CIAHDFFYGDEPKFINAVLDKVS 154 +A + D +FIN VL + + Sbjct: 181 ELAKRYSDDDGYRFINGVLRRFT 203 >gi|297834138|ref|XP_002884951.1| NOL1/NOP2/sun family protein [Arabidopsis lyrata subsp. lyrata] gi|297330791|gb|EFH61210.1| NOL1/NOP2/sun family protein [Arabidopsis lyrata subsp. lyrata] Length = 525 Score = 38.9 bits (89), Expect = 0.23, Method: Composition-based stats. Identities = 26/88 (29%), Positives = 47/88 (53%), Gaps = 2/88 (2%) Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131 ++ G + ++++D LI S + +F ++ +L ILR GV E+I+ +P ++ E V Sbjct: 117 VVGGTIRWRRYLDHLIGSLCHNERTFRNMEPLLLQILRIGVYEIIK-RDMPPYAVVDENV 175 Query: 132 CIAHDFFYGDEPKFINAVLDK-VSRKEE 158 +A F+N +L K VS KE+ Sbjct: 176 RLAKVALRPGAGDFVNGILRKLVSLKEK 203 >gi|22331043|ref|NP_187924.2| NOL1/NOP2/sun family protein / antitermination NusB domain-containing protein [Arabidopsis thaliana] gi|18176252|gb|AAL60011.1| putative sun protein fmu [Arabidopsis thaliana] gi|21436219|gb|AAM51397.1| putative sun protein fmu [Arabidopsis thaliana] gi|110740623|dbj|BAE98415.1| putative sun (fmu) protein [Arabidopsis thaliana] gi|332641785|gb|AEE75306.1| ribosomal RNA small subunit methyltransferase B [Arabidopsis thaliana] Length = 523 Score = 38.9 bits (89), Expect = 0.23, Method: Composition-based stats. Identities = 26/88 (29%), Positives = 47/88 (53%), Gaps = 2/88 (2%) Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131 ++ G + ++++D LI S + +F ++ +L ILR GV E+I+ +P ++ E V Sbjct: 115 VVGGTIRWRRYLDHLIGSLCHNERTFRNMEPLLLQILRIGVYEIIK-RDMPPYAVVDENV 173 Query: 132 CIAHDFFYGDEPKFINAVLDK-VSRKEE 158 +A F+N +L K VS KE+ Sbjct: 174 RLAKVALRPGAGDFVNGILRKLVSLKEK 201 >gi|10172606|dbj|BAB01410.1| unnamed protein product [Arabidopsis thaliana] Length = 531 Score = 38.9 bits (89), Expect = 0.23, Method: Composition-based stats. Identities = 26/88 (29%), Positives = 47/88 (53%), Gaps = 2/88 (2%) Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131 ++ G + ++++D LI S + +F ++ +L ILR GV E+I+ +P ++ E V Sbjct: 123 VVGGTIRWRRYLDHLIGSLCHNERTFRNMEPLLLQILRIGVYEIIK-RDMPPYAVVDENV 181 Query: 132 CIAHDFFYGDEPKFINAVLDK-VSRKEE 158 +A F+N +L K VS KE+ Sbjct: 182 RLAKVALRPGAGDFVNGILRKLVSLKEK 209 >gi|331703119|ref|YP_004399806.1| transcription termination factor NusB [Mycoplasma mycoides subsp. capri LC str. 95010] gi|328801674|emb|CBW53827.1| Transcription termination factor NusB [Mycoplasma mycoides subsp. capri LC str. 95010] Length = 132 Score = 38.9 bits (89), Expect = 0.24, Method: Compositional matrix adjust. Identities = 27/82 (32%), Positives = 45/82 (54%), Gaps = 11/82 (13%) Query: 80 KQHIDLL--ISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVC----I 133 K+ DL+ I++ ++ W + R+ ++ +IL G E++ + P V I+E V I Sbjct: 56 KKQTDLINHINTNVSSSWKWDRIPAVIRAILIVGTYEILYTDT-PKPVTINEMVKYVKEI 114 Query: 134 AHDFFYGDEPKFINAVLDKVSR 155 DF Y KF+NAVLDK+ + Sbjct: 115 EPDFDY----KFVNAVLDKLVK 132 >gi|73540472|ref|YP_294992.1| transcription antitermination protein NusB [Ralstonia eutropha JMP134] gi|119390803|sp|Q474N5|NUSB_RALEJ RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|72117885|gb|AAZ60148.1| NusB antitermination factor [Ralstonia eutropha JMP134] Length = 167 Score = 38.9 bits (89), Expect = 0.24, Method: Compositional matrix adjust. Identities = 24/94 (25%), Positives = 44/94 (46%), Gaps = 2/94 (2%) Query: 61 YLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHS 120 + D E F +++G + + + L K L + + L G EL+ C Sbjct: 64 FNKADSEHFDALLNGAVREEARLTAAFEPFLDRK--VEELSPVERAALLVGSYELVHCVD 121 Query: 121 VPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVS 154 +P +V+I+E V + F + K++N VLDK++ Sbjct: 122 IPYKVVINEAVELTKTFGGVEGYKYVNGVLDKLA 155 >gi|118581643|ref|YP_902893.1| sun protein [Pelobacter propionicus DSM 2379] gi|118504353|gb|ABL00836.1| sun protein [Pelobacter propionicus DSM 2379] Length = 452 Score = 38.9 bits (89), Expect = 0.24, Method: Compositional matrix adjust. Identities = 38/153 (24%), Positives = 67/153 (43%), Gaps = 18/153 (11%) Query: 6 NKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVD 65 + DLK S+ R +A L +I GC +++ D EL+ + D Sbjct: 2 SAPDLKRSN----PRQSACSVLLRIQREGCYADQLM----------DRELESGGLT-GPD 46 Query: 66 LEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEV 125 F ++ G + R+ +D ++SS LT+ SRL+ +LR G+ +L+ +P Sbjct: 47 RGLFAELVFGALRRQGTLDHILSSLLTQP--LSRLEPQALILLRVGLYQLVYLDRIPESA 104 Query: 126 IISEYVCIAHDFFYGDEPKFINAVLDKVSRKEE 158 ++E V +A +NAVL R+ + Sbjct: 105 AVNESVNLAKKTLPRAS-GLVNAVLRNYLRRGD 136 >gi|161507739|ref|YP_001577700.1| transcription termination [Lactobacillus helveticus DPC 4571] gi|160348728|gb|ABX27402.1| transcription termination [Lactobacillus helveticus DPC 4571] Length = 130 Score = 38.9 bits (89), Expect = 0.25, Method: Compositional matrix adjust. Identities = 26/132 (19%), Positives = 59/132 (44%), Gaps = 11/132 (8%) Query: 19 ARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMD 78 +R A+QA+Y + ++ +E + A L S Y + +I GV++ Sbjct: 6 SRKVAMQAVY----LANQEPDLSAEDVEAKVVATLNLKQLSAY-------SKKLIEGVLE 54 Query: 79 RKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFF 138 ++ + +++ L + W R+ I+ +I+ + E+ + + ++E + + +F Sbjct: 55 NREDLQSELTNHLKKSWRLERVSQIVVAIMEVALFEIKNSDKIDPKAAVNEALNLCDEFA 114 Query: 139 YGDEPKFINAVL 150 E FIN +L Sbjct: 115 EPKEKPFINGML 126 >gi|116625277|ref|YP_827433.1| NusB antitermination factor [Candidatus Solibacter usitatus Ellin6076] gi|122252386|sp|Q01T72|NUSB_SOLUE RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|116228439|gb|ABJ87148.1| NusB antitermination factor [Candidatus Solibacter usitatus Ellin6076] Length = 146 Score = 38.9 bits (89), Expect = 0.25, Method: Compositional matrix adjust. Identities = 24/85 (28%), Positives = 40/85 (47%), Gaps = 2/85 (2%) Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131 ++ G ++ +D I+ E W R+ + +ILR V E+ P V I E + Sbjct: 51 LVRGTVEHLAEVDDRITRH-AEHWRMERMPAVDRNILRLAVYEMTRG-GTPAPVTIDEAL 108 Query: 132 CIAHDFFYGDEPKFINAVLDKVSRK 156 +A F + +F+N VLD V R+ Sbjct: 109 ELARKFSNEESVQFVNGVLDAVRRE 133 >gi|330752415|emb|CBL87366.1| thioredoxin family protein [uncultured Flavobacteria bacterium] Length = 307 Score = 38.9 bits (89), Expect = 0.25, Method: Compositional matrix adjust. Identities = 21/63 (33%), Positives = 33/63 (52%) Query: 89 SCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINA 148 S T W R+ + IL+ + EL+ ++PV+ I+EY+ IA ++ FIN Sbjct: 227 SGKTPNWDKERIAGLDYVILKMAISELLYFPTIPVKATINEYLEIAKEYATPKSAIFING 286 Query: 149 VLD 151 VLD Sbjct: 287 VLD 289 >gi|194290431|ref|YP_002006338.1| transcription antitermination protein nusb [Cupriavidus taiwanensis LMG 19424] gi|193224266|emb|CAQ70275.1| antitermination factor (N UTILIZATION SUBSTANCE B) (TRANSCRIPTIONAL ANTITERMINATOR) [Cupriavidus taiwanensis LMG 19424] Length = 172 Score = 38.9 bits (89), Expect = 0.25, Method: Compositional matrix adjust. Identities = 24/91 (26%), Positives = 43/91 (47%), Gaps = 2/91 (2%) Query: 64 VDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPV 123 D E F +++G + + + L S L + + L G EL+ C +P Sbjct: 72 ADREHFDALLNGAVREEARLTAAFEPFLDR--SVDELSPVERAALLVGSYELVHCLDIPY 129 Query: 124 EVIISEYVCIAHDFFYGDEPKFINAVLDKVS 154 +V+I+E V + F + K++N VLDK++ Sbjct: 130 KVVINEAVELTKTFGGVEGYKYVNGVLDKLA 160 >gi|260101433|ref|ZP_05751670.1| transcriptional termination factor [Lactobacillus helveticus DSM 20075] gi|260084773|gb|EEW68893.1| transcriptional termination factor [Lactobacillus helveticus DSM 20075] Length = 135 Score = 38.9 bits (89), Expect = 0.25, Method: Compositional matrix adjust. Identities = 26/132 (19%), Positives = 59/132 (44%), Gaps = 11/132 (8%) Query: 19 ARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMD 78 +R A+QA+Y + ++ +E + A L S Y + +I GV++ Sbjct: 11 SRKVAMQAVY----LANQEPDLSAEDVETKVVATLNLKQLSAY-------SKKLIEGVLE 59 Query: 79 RKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFF 138 ++ + +++ L + W R+ I+ +I+ + E+ + + ++E + + +F Sbjct: 60 NREDLQSELTNHLKKSWRLERVSQIVVAIMEVALFEIKNSDEIDPKAAVNEALNLCDEFA 119 Query: 139 YGDEPKFINAVL 150 E FIN +L Sbjct: 120 EPKEKPFINGML 131 >gi|329903611|ref|ZP_08273569.1| Transcription termination protein NusB [Oxalobacteraceae bacterium IMCC9480] gi|327548271|gb|EGF32966.1| Transcription termination protein NusB [Oxalobacteraceae bacterium IMCC9480] Length = 157 Score = 38.9 bits (89), Expect = 0.25, Method: Compositional matrix adjust. Identities = 24/61 (39%), Positives = 33/61 (54%) Query: 96 SFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSR 155 S+L I +IL G EL +P +VII+E V +A F D K++N VLDK + Sbjct: 85 PLSQLSPIEHAILLIGAYELKNHIEIPYKVIINESVELAKSFGGIDGHKYVNGVLDKFAA 144 Query: 156 K 156 K Sbjct: 145 K 145 >gi|330443798|ref|YP_004376784.1| hypothetical protein G5S_0047 [Chlamydophila pecorum E58] gi|328806908|gb|AEB41081.1| conserved hypothetical protein [Chlamydophila pecorum E58] Length = 154 Score = 38.9 bits (89), Expect = 0.26, Method: Compositional matrix adjust. Identities = 22/80 (27%), Positives = 43/80 (53%), Gaps = 1/80 (1%) Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135 V+++ +D LIS + + SF L+++ +ILR + E + +P ++I+E + Sbjct: 57 VLEKSSELDALISQTV-KTTSFENLNLMEKNILRLTLFEYLYGGPIPSSILIAEASRLIK 115 Query: 136 DFFYGDEPKFINAVLDKVSR 155 F Y + F+ AVL+ + R Sbjct: 116 KFSYLEARAFVQAVLNDIFR 135 >gi|294791859|ref|ZP_06757007.1| transcription antitermination factor NusB [Veillonella sp. 6_1_27] gi|294457089|gb|EFG25451.1| transcription antitermination factor NusB [Veillonella sp. 6_1_27] Length = 134 Score = 38.9 bits (89), Expect = 0.26, Method: Compositional matrix adjust. Identities = 29/106 (27%), Positives = 51/106 (48%), Gaps = 4/106 (3%) Query: 52 DTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISS-CLTEKWSFSRLDMILCSILRA 110 D + +++ +D + II GV+ + ID + C + K + LD + SILR Sbjct: 29 DVQFPEGNIHKAMDKAYANSIIEGVLSNVEAIDATLQPFCKSRK--VANLDKVDRSILRI 86 Query: 111 GVLELI-ECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSR 155 V E+ + + + I+E + +A DF K INA+LD ++ Sbjct: 87 AVWEMTNKVEPLEPSIAINEAIQLAKDFGSDASYKLINAILDAYNK 132 >gi|291531066|emb|CBK96651.1| transcription antitermination factor NusB [Eubacterium siraeum 70/3] Length = 143 Score = 38.9 bits (89), Expect = 0.26, Method: Compositional matrix adjust. Identities = 34/132 (25%), Positives = 64/132 (48%), Gaps = 14/132 (10%) Query: 20 RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79 R AA+ L+Q+ + + EI+ E + + E + +SV L + GV + Sbjct: 12 REAALLILFQMKLNPETLDEIL---EDCKESFEMEYNSQSVKL----------VKGVAEH 58 Query: 80 KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139 + ++ +I S + R+ I +I+R + E+ C SVP +V I+E + A ++ Sbjct: 59 EDELNGIIES-YSPSRKLDRISYINLAIMRIALYEMKYCPSVPDKVAINEAIEFAKEYAD 117 Query: 140 GDEPKFINAVLD 151 + +FIN VL+ Sbjct: 118 KTDVRFINGVLN 129 >gi|258592639|emb|CBE68948.1| Sun protein [NC10 bacterium 'Dutch sediment'] Length = 467 Score = 38.9 bits (89), Expect = 0.26, Method: Compositional matrix adjust. Identities = 22/86 (25%), Positives = 43/86 (50%), Gaps = 6/86 (6%) Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131 + +GV+ + +D L+++ W R+D L +LR G +++ VP ++E V Sbjct: 60 LTYGVLRWQGRLDYLLAAVTDRPWD--RVDPALRRLLRLGAYQILFLTRVPAYAAVNETV 117 Query: 132 CIAHDFFYGD-EP---KFINAVLDKV 153 +A D +P F+NA+L ++ Sbjct: 118 ALAQDVMRSQLKPVAKAFVNAILRRL 143 >gi|51892487|ref|YP_075178.1| hypothetical protein STH1349 [Symbiobacterium thermophilum IAM 14863] gi|51856176|dbj|BAD40334.1| conserved hypothetical protein [Symbiobacterium thermophilum IAM 14863] Length = 459 Score = 38.9 bits (89), Expect = 0.27, Method: Compositional matrix adjust. Identities = 30/138 (21%), Positives = 58/138 (42%), Gaps = 13/138 (9%) Query: 19 ARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMD 78 R AA++ALY +DI + + + ++LD L +L +GV Sbjct: 12 GREAALRALYDVDIKAAYANLALDHH-----LSRSQLDGRERALATEL------AYGVTR 60 Query: 79 RKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFF 138 R+ +D I ++D + +ILR +++ +P + + V +A + Sbjct: 61 RRATLDWAIGQVAAR--PLEKMDPWVRNILREAAYQILYMDRIPPAAAVDQAVELARQYG 118 Query: 139 YGDEPKFINAVLDKVSRK 156 + KF+N VL + R+ Sbjct: 119 HEGVAKFVNGVLRNLIRR 136 >gi|332981364|ref|YP_004462805.1| NusB antitermination factor [Mahella australiensis 50-1 BON] gi|332699042|gb|AEE95983.1| NusB antitermination factor [Mahella australiensis 50-1 BON] Length = 134 Score = 38.5 bits (88), Expect = 0.28, Method: Compositional matrix adjust. Identities = 41/138 (29%), Positives = 64/138 (46%), Gaps = 19/138 (13%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 R AR AV +Y+ID+ + +I+ RF L+ D ++ I+ Sbjct: 3 RRQARQDAVCLMYEIDMQDGDSDDILE-----RFFNTHALN------EADAKYIDEIVKL 51 Query: 76 VMDRKQHIDLLI-SSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134 ++ + ID I SC + +++D+ +ILR E++ SVP V I E V +A Sbjct: 52 ALEHRDDIDRGIEQSCGRKIEYLAKMDL---AILRIAAAEMLYMPSVPHRVSIDEAVELA 108 Query: 135 HDFFYGDE--PKFINAVL 150 YGD+ P FIN VL Sbjct: 109 K--RYGDDMSPTFINGVL 124 >gi|283783379|ref|YP_003374133.1| transcription antitermination factor NusB [Gardnerella vaginalis 409-05] gi|298252678|ref|ZP_06976472.1| transcription termination factor [Gardnerella vaginalis 5-1] gi|283441142|gb|ADB13608.1| transcription antitermination factor NusB [Gardnerella vaginalis 409-05] gi|297533042|gb|EFH71926.1| transcription termination factor [Gardnerella vaginalis 5-1] Length = 160 Score = 38.5 bits (88), Expect = 0.29, Method: Compositional matrix adjust. Identities = 35/138 (25%), Positives = 59/138 (42%), Gaps = 12/138 (8%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 R AR A+ LY+ D ++ E A T L E+ I+ G Sbjct: 3 RSTARKRALNTLYEADEKNQHILSLLEE-RVKEPGAQTPLP----------EYAVEIVRG 51 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135 V +R+ ID ++ T W R+ +I +ILR V E++ +P +V I E + +A Sbjct: 52 VGERRNRIDKTLNRYST-GWKVGRMAVIDRNILRIAVWEMLLNDEIPDKVAIDEAIALAK 110 Query: 136 DFFYGDEPKFINAVLDKV 153 + + FI+ +L + Sbjct: 111 MYSDDEAIAFIHGLLSAI 128 >gi|121533700|ref|ZP_01665527.1| sun protein [Thermosinus carboxydivorans Nor1] gi|121307691|gb|EAX48606.1| sun protein [Thermosinus carboxydivorans Nor1] Length = 442 Score = 38.5 bits (88), Expect = 0.29, Method: Compositional matrix adjust. Identities = 28/140 (20%), Positives = 61/140 (43%), Gaps = 13/140 (9%) Query: 19 ARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMD 78 AR A++ + ++DI G +++ + R D D + +++G + Sbjct: 3 AREVALKVINRVDIDGAYANIALAQEMSQRDLTDR-----------DRRFITELVYGTVK 51 Query: 79 RKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFF 138 +D ++S + ++ ++ +ILR G+ ++ +PV +E V +A + Sbjct: 52 AGATLDWILSHYSSR--PLDKIHPVIRNILRMGIYQIFFLSRIPVSAACNEAVKLAQKYG 109 Query: 139 YGDEPKFINAVLDKVSRKEE 158 + KF+NAVL R + Sbjct: 110 HAGTVKFVNAVLRSAGRSPD 129 >gi|291545446|emb|CBL18554.1| transcription antitermination factor NusB [Ruminococcus sp. SR1/5] Length = 158 Score = 38.5 bits (88), Expect = 0.30, Method: Compositional matrix adjust. Identities = 25/90 (27%), Positives = 41/90 (45%), Gaps = 1/90 (1%) Query: 65 DLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVE 124 D E+ + V + + ID ++S + W R+ + + LR V E+ VP Sbjct: 43 DQEYMKKKYAHVKEHLEEIDAQLNSA-SRGWKTKRMSRVDLAALRLAVYEMEYDADVPTG 101 Query: 125 VIISEYVCIAHDFFYGDEPKFINAVLDKVS 154 V I+E V +A F F+N VL K++ Sbjct: 102 VAINEAVELAKRFGGDASGSFVNGVLGKIA 131 >gi|303258269|ref|ZP_07344276.1| transcription antitermination factor NusB [Burkholderiales bacterium 1_1_47] gi|302859022|gb|EFL82106.1| transcription antitermination factor NusB [Burkholderiales bacterium 1_1_47] Length = 188 Score = 38.5 bits (88), Expect = 0.30, Method: Compositional matrix adjust. Identities = 30/98 (30%), Positives = 45/98 (45%), Gaps = 19/98 (19%) Query: 64 VDLEWFRVIIHGVMDR--------KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLEL 115 D ++R ++HGV + HID ++S L I +IL G EL Sbjct: 87 ADQAFYRELLHGVTEEFPSLETSYAPHIDREVTS----------LSPIERAILLIGTYEL 136 Query: 116 IECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKV 153 + P V+I+E V +A F D K++N VLDK+ Sbjct: 137 KNT-TTPYRVVINEAVELAKSFGGSDGFKYVNGVLDKM 173 >gi|297243390|ref|ZP_06927323.1| transcription termination factor [Gardnerella vaginalis AMD] gi|296888637|gb|EFH27376.1| transcription termination factor [Gardnerella vaginalis AMD] Length = 160 Score = 38.5 bits (88), Expect = 0.30, Method: Compositional matrix adjust. Identities = 23/82 (28%), Positives = 42/82 (51%), Gaps = 1/82 (1%) Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131 I+ GV +R+ ID ++ T W R+ +I +ILR V E++ +P +V I E + Sbjct: 48 IVRGVGERRNRIDKTLNRYST-GWKVGRMAVIDRNILRIAVWEMLLNDEIPDKVAIDEAI 106 Query: 132 CIAHDFFYGDEPKFINAVLDKV 153 +A + + FI+ +L + Sbjct: 107 ALAKMYSDDEAIAFIHGLLSAI 128 >gi|186680628|ref|YP_001863824.1| transcription antitermination protein NusB [Nostoc punctiforme PCC 73102] gi|238689253|sp|B2J3F1|NUSB_NOSP7 RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|186463080|gb|ACC78881.1| NusB antitermination factor [Nostoc punctiforme PCC 73102] Length = 213 Score = 38.5 bits (88), Expect = 0.30, Method: Compositional matrix adjust. Identities = 26/92 (28%), Positives = 50/92 (54%), Gaps = 2/92 (2%) Query: 67 EWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVI 126 + + ++ V + + ID L+S+ L + W +RL + IL+ V E+ + VP + Sbjct: 122 NYAKELVITVNENRHIIDELLSTALVD-WQVTRLAQLDRDILQIAVAEM-KFLGVPDSIA 179 Query: 127 ISEYVCIAHDFFYGDEPKFINAVLDKVSRKEE 158 I+E V +A + D +FIN VL +V+ +++ Sbjct: 180 INEAVELAKRYSGDDGHRFINGVLRRVTEQKK 211 >gi|291515762|emb|CBK64972.1| Transcription termination factor [Alistipes shahii WAL 8301] Length = 311 Score = 38.5 bits (88), Expect = 0.31, Method: Compositional matrix adjust. Identities = 23/77 (29%), Positives = 38/77 (49%), Gaps = 4/77 (5%) Query: 91 LTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVL 150 T W R+ + I+ + EL SVPV+V + E++ I+ + FIN VL Sbjct: 231 FTANWDVERIVFMDNLIIGTAMAELTSFPSVPVKVTLDEWIEISKYYSTPGSSTFINGVL 290 Query: 151 DKV----SRKEEIKRSG 163 DK+ + + IK++G Sbjct: 291 DKIVESLTAEGRIKKAG 307 >gi|82621723|gb|ABB86539.1| NusB [uncultured Bacteroidetes bacterium 'SBI2-18 P41A3'] Length = 325 Score = 38.5 bits (88), Expect = 0.31, Method: Compositional matrix adjust. Identities = 25/87 (28%), Positives = 47/87 (54%), Gaps = 1/87 (1%) Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131 +I V++ K+ + IS T W R+ I +L+ + E + S+P++V I+EY+ Sbjct: 215 LIKYVIENKEMLQDEISKV-TPNWDNERIAQIDLILLQMCLSEFLFFKSIPLKVSINEYL 273 Query: 132 CIAHDFFYGDEPKFINAVLDKVSRKEE 158 IA ++ FIN ++D +S++ E Sbjct: 274 EIAKEYSSDKSNIFINGIMDSLSKQFE 300 >gi|289578506|ref|YP_003477133.1| sun protein [Thermoanaerobacter italicus Ab9] gi|289528219|gb|ADD02571.1| sun protein [Thermoanaerobacter italicus Ab9] Length = 444 Score = 38.5 bits (88), Expect = 0.32, Method: Compositional matrix adjust. Identities = 27/95 (28%), Positives = 46/95 (48%), Gaps = 5/95 (5%) Query: 64 VDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPV 123 VD ++ + ++ GV++RK +D ++S + + D L G+ +L+ VP Sbjct: 37 VDRDFIKKLVFGVIERKYTLDFILSFFVKKPA-----DEKSKIFLEMGLYQLLYMDKVPS 91 Query: 124 EVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEE 158 I+E V IA + FINAVL R++E Sbjct: 92 YAAINETVNIAKNVLGIKRANFINAVLRSYEREKE 126 >gi|160892144|ref|ZP_02073147.1| hypothetical protein BACUNI_04607 [Bacteroides uniformis ATCC 8492] gi|270296236|ref|ZP_06202436.1| conserved hypothetical protein [Bacteroides sp. D20] gi|317480857|ref|ZP_07939938.1| transcription antitermination factor NusB [Bacteroides sp. 4_1_36] gi|156858622|gb|EDO52053.1| hypothetical protein BACUNI_04607 [Bacteroides uniformis ATCC 8492] gi|270273640|gb|EFA19502.1| conserved hypothetical protein [Bacteroides sp. D20] gi|316902942|gb|EFV24815.1| transcription antitermination factor NusB [Bacteroides sp. 4_1_36] Length = 308 Score = 38.5 bits (88), Expect = 0.32, Method: Compositional matrix adjust. Identities = 19/75 (25%), Positives = 38/75 (50%), Gaps = 2/75 (2%) Query: 92 TEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLD 151 T W R+ + I++ + E++ ++PV V ++EYV IA + F+N LD Sbjct: 234 TRNWDLDRVAFMDVVIMQCALAEILSFPNIPVSVSLNEYVDIAKVYSTAKSGSFVNGTLD 293 Query: 152 KVSRKEEIKRSGCVS 166 + ++K+ G ++ Sbjct: 294 GIVN--QLKKEGKLT 306 >gi|84496669|ref|ZP_00995523.1| NusB antitermination factor [Janibacter sp. HTCC2649] gi|84383437|gb|EAP99318.1| NusB antitermination factor [Janibacter sp. HTCC2649] Length = 136 Score = 38.5 bits (88), Expect = 0.32, Method: Compositional matrix adjust. Identities = 27/83 (32%), Positives = 48/83 (57%), Gaps = 2/83 (2%) Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131 ++ GV+D I+ L+++ ++ WS R+ + +ILR G E++ VP V I+E V Sbjct: 49 LVTGVVDNWSQINDLLATY-SQGWSVERMPAVDRAILRVGAFEVL-FGEVPEGVAIAEAV 106 Query: 132 CIAHDFFYGDEPKFINAVLDKVS 154 IA + D PKF+N +L +++ Sbjct: 107 AIATELSTDDSPKFVNGLLARLA 129 >gi|18310723|ref|NP_562657.1| RNA-binding Sun protein [Clostridium perfringens str. 13] gi|18145404|dbj|BAB81447.1| probable RNA-binding Sun protein [Clostridium perfringens str. 13] Length = 442 Score = 38.5 bits (88), Expect = 0.33, Method: Compositional matrix adjust. Identities = 25/89 (28%), Positives = 47/89 (52%), Gaps = 10/89 (11%) Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131 +++G + K+ ID+++SS + + ++D + +ILR+ + ++ VP I++E V Sbjct: 45 VVYGTIKYKKMIDIILSSFVAD---IGKIDESVVNILRSAIYQMKFLDRVPPYAIVNEAV 101 Query: 132 CIAHDFFYGDEP---KFINAVLDKVSRKE 157 + + EP KFIN VL R E Sbjct: 102 NLTKE----TEPNLAKFINGVLRNYLRNE 126 >gi|306818731|ref|ZP_07452453.1| possible transcription antitermination protein NusB [Mobiluncus mulieris ATCC 35239] gi|304648417|gb|EFM45720.1| possible transcription antitermination protein NusB [Mobiluncus mulieris ATCC 35239] Length = 182 Score = 38.5 bits (88), Expect = 0.34, Method: Compositional matrix adjust. Identities = 22/91 (24%), Positives = 45/91 (49%), Gaps = 1/91 (1%) Query: 68 WFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVII 127 + R I+ G+ + + ID +++ + WS R+ + +I+R E++ V V I Sbjct: 38 YAREILEGIAEHLERIDAALATY-SRAWSLHRMPEVDLAIMRVATWEILFNPDVDGPVAI 96 Query: 128 SEYVCIAHDFFYGDEPKFINAVLDKVSRKEE 158 + + +A + + PKFIN +L ++ E Sbjct: 97 TAAMQLAAERSTDESPKFINGLLGTINDMRE 127 >gi|319901555|ref|YP_004161283.1| NusB antitermination factor [Bacteroides helcogenes P 36-108] gi|319416586|gb|ADV43697.1| NusB antitermination factor [Bacteroides helcogenes P 36-108] Length = 308 Score = 38.5 bits (88), Expect = 0.35, Method: Compositional matrix adjust. Identities = 19/75 (25%), Positives = 38/75 (50%), Gaps = 2/75 (2%) Query: 92 TEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLD 151 T W R+ + I++ + E++ ++PV V ++EYV IA + F+N LD Sbjct: 234 TRNWDLDRVAFMDVIIMQCALAEILSFPNIPVSVSLNEYVDIAKVYSTAKSGSFVNGTLD 293 Query: 152 KVSRKEEIKRSGCVS 166 + ++K+ G ++ Sbjct: 294 GIVN--QLKKEGKLT 306 >gi|313885233|ref|ZP_07818985.1| ribosomal RNA small subunit methyltransferase B [Eremococcus coleocola ACS-139-V-Col8] gi|312619924|gb|EFR31361.1| ribosomal RNA small subunit methyltransferase B [Eremococcus coleocola ACS-139-V-Col8] Length = 456 Score = 38.5 bits (88), Expect = 0.36, Method: Compositional matrix adjust. Identities = 32/148 (21%), Positives = 67/148 (45%), Gaps = 14/148 (9%) Query: 15 RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELD---VESVYLHVDLEWFRV 71 ++ +AR A QA +Q +I + + E + ++ LD E+ VD Sbjct: 4 KKNVARKLADQARFQALLI-------LDQVENHGGYSNVLLDRFHQETSLSPVDTNLVVK 56 Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131 +++GV+ R+ +D ++ + K ++D + S+LR + + I +P + S+ V Sbjct: 57 LVYGVIQRRYSLDYFLAPFIKGK----KVDDWVASLLRLSIYQFIYLDRIPDHAVFSQAV 112 Query: 132 CIAHDFFYGDEPKFINAVLDKVSRKEEI 159 +A + F+N VL R+ ++ Sbjct: 113 EMAKLIGHAGLGGFVNGVLRNFQRRADL 140 >gi|293400615|ref|ZP_06644760.1| transcription antitermination factor NusB [Erysipelotrichaceae bacterium 5_2_54FAA] gi|291305641|gb|EFE46885.1| transcription antitermination factor NusB [Erysipelotrichaceae bacterium 5_2_54FAA] Length = 126 Score = 38.5 bits (88), Expect = 0.36, Method: Compositional matrix adjust. Identities = 26/91 (28%), Positives = 45/91 (49%), Gaps = 2/91 (2%) Query: 63 HVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVP 122 +D + V I + + +I + I+ L E W+F RL + +IL EL + P Sbjct: 38 EIDPFLYTVTIDAIKYEEDYIQM-INEALREDWTFERLGYVEKAILIMAACEL-DMEIAP 95 Query: 123 VEVIISEYVCIAHDFFYGDEPKFINAVLDKV 153 ++I+E V +A + + K IN VLD++ Sbjct: 96 KPIVINEAVTLAKKYCDEETYKLINGVLDRL 126 >gi|187927756|ref|YP_001898243.1| transcription antitermination protein NusB [Ralstonia pickettii 12J] gi|238691779|sp|B2U7E9|NUSB_RALPJ RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|187724646|gb|ACD25811.1| NusB antitermination factor [Ralstonia pickettii 12J] Length = 155 Score = 38.1 bits (87), Expect = 0.38, Method: Compositional matrix adjust. Identities = 23/91 (25%), Positives = 43/91 (47%), Gaps = 2/91 (2%) Query: 64 VDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPV 123 D F ++HG + + + + L + L + + L G EL+ C +P Sbjct: 55 ADRAHFDALLHGAIREETTLTEAFTPYLDR--PVAELSPVERAALLVGAYELVHCVDIPY 112 Query: 124 EVIISEYVCIAHDFFYGDEPKFINAVLDKVS 154 +V+I+E V + F + K++N VLDK++ Sbjct: 113 KVVINEAVELTKTFGGVEGYKYVNGVLDKLA 143 >gi|291459867|ref|ZP_06599257.1| n utilization substance protein B [Oribacterium sp. oral taxon 078 str. F0262] gi|291417657|gb|EFE91376.1| n utilization substance protein B [Oribacterium sp. oral taxon 078 str. F0262] Length = 264 Score = 38.1 bits (87), Expect = 0.38, Method: Compositional matrix adjust. Identities = 21/79 (26%), Positives = 41/79 (51%), Gaps = 1/79 (1%) Query: 75 GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134 G++ R + +D I+ E W+ R+ ++LR + E++ +P +V I+E V IA Sbjct: 150 GMVGRIEELDRRINEA-AEGWTTKRMSRTDLTVLRLALYEILFRDEIPDKVSINEAVDIA 208 Query: 135 HDFFYGDEPKFINAVLDKV 153 + + F+N VL ++ Sbjct: 209 KKYGGAESGSFVNGVLARL 227 >gi|282899369|ref|ZP_06307337.1| NusB antitermination factor [Cylindrospermopsis raciborskii CS-505] gi|281195736|gb|EFA70665.1| NusB antitermination factor [Cylindrospermopsis raciborskii CS-505] Length = 213 Score = 38.1 bits (87), Expect = 0.38, Method: Compositional matrix adjust. Identities = 27/86 (31%), Positives = 45/86 (52%), Gaps = 2/86 (2%) Query: 68 WFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVII 127 + + I+ V + + +D +IS L + W +RL I IL+ V E+ + VP + I Sbjct: 123 YAKEIVVTVDENRPILDQIISQALVD-WQVTRLAQIDRDILQIAVAEM-KFMEVPPSIAI 180 Query: 128 SEYVCIAHDFFYGDEPKFINAVLDKV 153 +E V +A + D +FIN VL +V Sbjct: 181 NEAVELAKRYSGDDGHRFINGVLRRV 206 >gi|269977328|ref|ZP_06184301.1| putative N utilization substance B-like protein [Mobiluncus mulieris 28-1] gi|269934631|gb|EEZ91192.1| putative N utilization substance B-like protein [Mobiluncus mulieris 28-1] Length = 197 Score = 38.1 bits (87), Expect = 0.38, Method: Compositional matrix adjust. Identities = 23/91 (25%), Positives = 44/91 (48%), Gaps = 1/91 (1%) Query: 68 WFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVII 127 + R I+ GV + ID +++ + WS R+ + +I+R E++ V V I Sbjct: 53 YAREILEGVAEHLDRIDAALAT-YSRAWSLHRMPEVDLAIMRVATWEILFNPDVDGPVAI 111 Query: 128 SEYVCIAHDFFYGDEPKFINAVLDKVSRKEE 158 + + +A + + PKFIN +L ++ E Sbjct: 112 TAAMQLAAERSTDESPKFINGLLGTINDMRE 142 >gi|309780817|ref|ZP_07675558.1| transcription antitermination factor NusB [Ralstonia sp. 5_7_47FAA] gi|308920499|gb|EFP66155.1| transcription antitermination factor NusB [Ralstonia sp. 5_7_47FAA] Length = 155 Score = 38.1 bits (87), Expect = 0.39, Method: Compositional matrix adjust. Identities = 23/91 (25%), Positives = 43/91 (47%), Gaps = 2/91 (2%) Query: 64 VDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPV 123 D F ++HG + + + + L + L + + L G EL+ C +P Sbjct: 55 ADRAHFDALLHGAIREETTLTEAFTPYLDR--PVAELSPVERAALLVGAYELVHCVDIPY 112 Query: 124 EVIISEYVCIAHDFFYGDEPKFINAVLDKVS 154 +V+I+E V + F + K++N VLDK++ Sbjct: 113 KVVINEAVELTKTFGGVEGYKYVNGVLDKLA 143 >gi|254468502|ref|ZP_05081908.1| transcription antitermination factor NusB [beta proteobacterium KB13] gi|207087312|gb|EDZ64595.1| transcription antitermination factor NusB [beta proteobacterium KB13] Length = 127 Score = 38.1 bits (87), Expect = 0.39, Method: Compositional matrix adjust. Identities = 28/96 (29%), Positives = 47/96 (48%), Gaps = 2/96 (2%) Query: 61 YLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHS 120 Y D E++ +I G+ + Q I + + + +K L+ I SIL EL Sbjct: 27 YCRCDEEFYNSLIDGIKENYQEILEDLDNFMDKKKE--ELNPIELSILVVAYYELKTRVD 84 Query: 121 VPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRK 156 +P +V I+E + I F + KF+N LD+V++K Sbjct: 85 IPFKVSINEALEITKSFGGQESFKFVNGSLDRVAKK 120 >gi|152993501|ref|YP_001359222.1| transcription antitermination protein NusB [Sulfurovum sp. NBC37-1] gi|166215724|sp|A6QBK6|NUSB_SULNB RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|151425362|dbj|BAF72865.1| transcription antitermination factor NusB [Sulfurovum sp. NBC37-1] Length = 130 Score = 38.1 bits (87), Expect = 0.39, Method: Compositional matrix adjust. Identities = 23/84 (27%), Positives = 41/84 (48%), Gaps = 2/84 (2%) Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131 + G ++ + +D I LT+ W + + + +ILR G E++ +II+E V Sbjct: 49 LFDGTIENLEMLDAEIEKHLTD-WDYDAIGRVEKAILRLGAYEIL-VAKTDRAIIINEAV 106 Query: 132 CIAHDFFYGDEPKFINAVLDKVSR 155 +A P+FIN VLD + + Sbjct: 107 ELAKSLADEKSPQFINGVLDAIGK 130 >gi|258647540|ref|ZP_05735009.1| NusB family protein [Prevotella tannerae ATCC 51259] gi|260852324|gb|EEX72193.1| NusB family protein [Prevotella tannerae ATCC 51259] Length = 309 Score = 38.1 bits (87), Expect = 0.41, Method: Compositional matrix adjust. Identities = 32/115 (27%), Positives = 54/115 (46%), Gaps = 17/115 (14%) Query: 39 EIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFS 98 EI+ EY DTE D + LE F+ I +R + LI + ++ W F Sbjct: 200 EILPEY-------DTEDDHQFA-----LELFQTTI----ERGDEMRDLIRNN-SKNWEFG 242 Query: 99 RLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKV 153 RL + I++ + E++ ++P+ V +EY+ IA + +IN +LD V Sbjct: 243 RLAFMDVIIMQIALTEMLTFPTIPLNVTFNEYLDIAKIYSTPRSSSYINGLLDHV 297 >gi|297537700|ref|YP_003673469.1| NusB antitermination factor [Methylotenera sp. 301] gi|297257047|gb|ADI28892.1| NusB antitermination factor [Methylotenera sp. 301] Length = 175 Score = 38.1 bits (87), Expect = 0.41, Method: Compositional matrix adjust. Identities = 27/94 (28%), Positives = 49/94 (52%), Gaps = 2/94 (2%) Query: 61 YLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHS 120 Y D +F+ ++ V + +D +++ + + S L I +IL+ EL+ S Sbjct: 71 YAKADEAYFKQLLEAVGEHATELDEKMAAFIDRQ--VSELSPIEHAILQISGCELMFDMS 128 Query: 121 VPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVS 154 +P V+I+E V +A + D K+IN VLDK++ Sbjct: 129 IPYRVVINEGVELAKIYGGIDGHKYINGVLDKLA 162 >gi|149920268|ref|ZP_01908739.1| hypothetical protein PPSIR1_08951 [Plesiocystis pacifica SIR-1] gi|149818855|gb|EDM78295.1| hypothetical protein PPSIR1_08951 [Plesiocystis pacifica SIR-1] Length = 169 Score = 38.1 bits (87), Expect = 0.41, Method: Compositional matrix adjust. Identities = 19/80 (23%), Positives = 37/80 (46%), Gaps = 2/80 (2%) Query: 68 WFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVII 127 W R + ++ +D I + +E+W R+D + ++LR +EL P V++ Sbjct: 72 WARRLTEAYLEDAAAVDQAIGAA-SERWRIERMDRVDRNVLRLAAVEL-RTQKTPRNVVV 129 Query: 128 SEYVCIAHDFFYGDEPKFIN 147 +E V +A + F+N Sbjct: 130 AEAVRLAARYGSERSAAFVN 149 >gi|312129526|ref|YP_003996866.1| nusb antitermination factor [Leadbetterella byssophila DSM 17132] gi|311906072|gb|ADQ16513.1| NusB antitermination factor [Leadbetterella byssophila DSM 17132] Length = 371 Score = 38.1 bits (87), Expect = 0.42, Method: Compositional matrix adjust. Identities = 26/78 (33%), Positives = 41/78 (52%), Gaps = 10/78 (12%) Query: 93 EKWSFSRL---DMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAV 149 + W R+ D+IL L+ V EL S+PV+V I+E + IA ++ FIN + Sbjct: 290 KNWDLERIIGTDLIL---LKMAVAELTTFPSIPVKVTINEIIEIAKNYSSEKSKVFINGL 346 Query: 150 LDKV----SRKEEIKRSG 163 LD + +K IK++G Sbjct: 347 LDSICKDLQQKGLIKKTG 364 >gi|227875419|ref|ZP_03993560.1| possible transcription antitermination protein NusB [Mobiluncus mulieris ATCC 35243] gi|227843973|gb|EEJ54141.1| possible transcription antitermination protein NusB [Mobiluncus mulieris ATCC 35243] Length = 182 Score = 38.1 bits (87), Expect = 0.43, Method: Compositional matrix adjust. Identities = 23/91 (25%), Positives = 44/91 (48%), Gaps = 1/91 (1%) Query: 68 WFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVII 127 + R I+ GV + ID +++ + WS R+ + +I+R E++ V V I Sbjct: 38 YAREILEGVAEHLDRIDAALATY-SRAWSLHRMPEVDLAIMRVATWEILFNPDVDGPVAI 96 Query: 128 SEYVCIAHDFFYGDEPKFINAVLDKVSRKEE 158 + + +A + + PKFIN +L ++ E Sbjct: 97 TAAMQLAAERSTDESPKFINGLLGTINDMRE 127 >gi|167040389|ref|YP_001663374.1| sun protein [Thermoanaerobacter sp. X514] gi|256752273|ref|ZP_05493136.1| sun protein [Thermoanaerobacter ethanolicus CCSD1] gi|300914473|ref|ZP_07131789.1| sun protein [Thermoanaerobacter sp. X561] gi|307724291|ref|YP_003904042.1| sun protein [Thermoanaerobacter sp. X513] gi|166854629|gb|ABY93038.1| sun protein [Thermoanaerobacter sp. X514] gi|256748841|gb|EEU61882.1| sun protein [Thermoanaerobacter ethanolicus CCSD1] gi|300889408|gb|EFK84554.1| sun protein [Thermoanaerobacter sp. X561] gi|307581352|gb|ADN54751.1| sun protein [Thermoanaerobacter sp. X513] Length = 444 Score = 38.1 bits (87), Expect = 0.45, Method: Compositional matrix adjust. Identities = 26/95 (27%), Positives = 45/95 (47%), Gaps = 5/95 (5%) Query: 64 VDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPV 123 +D + + ++ GV++RK +D ++S + + D+ L G+ +L+ VP Sbjct: 37 IDRGFTKELVFGVIERKYTLDFILSFFVNKAP-----DLKTMIFLEMGLYQLLYMDKVPS 91 Query: 124 EVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEE 158 I+E V IA FINAVL R++E Sbjct: 92 YAAINETVNIAKKVLGIKRANFINAVLRNYDREKE 126 >gi|168207268|ref|ZP_02633273.1| ribosomal RNA small subunit methyltransferase B [Clostridium perfringens E str. JGS1987] gi|169342659|ref|ZP_02629420.2| ribosomal RNA small subunit methyltransferase B [Clostridium perfringens C str. JGS1495] gi|169299165|gb|EDS81235.1| ribosomal RNA small subunit methyltransferase B [Clostridium perfringens C str. JGS1495] gi|170661376|gb|EDT14059.1| ribosomal RNA small subunit methyltransferase B [Clostridium perfringens E str. JGS1987] Length = 442 Score = 38.1 bits (87), Expect = 0.45, Method: Compositional matrix adjust. Identities = 24/89 (26%), Positives = 47/89 (52%), Gaps = 10/89 (11%) Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131 +++G + K+ ID+++SS + + ++D + +ILR+ + ++ VP I++E V Sbjct: 45 VVYGTIKYKKMIDIILSSFVAD---IGKIDESVVNILRSAIYQMKFLDRVPPYAIVNEAV 101 Query: 132 CIAHDFFYGDEP---KFINAVLDKVSRKE 157 + + EP KF+N VL R E Sbjct: 102 NLTKE----TEPNLAKFVNGVLRNYLRNE 126 >gi|298346844|ref|YP_003719531.1| putative transcription antitermination protein NusB [Mobiluncus curtisii ATCC 43063] gi|298236905|gb|ADI68037.1| possible transcription antitermination protein NusB [Mobiluncus curtisii ATCC 43063] Length = 174 Score = 38.1 bits (87), Expect = 0.46, Method: Compositional matrix adjust. Identities = 32/130 (24%), Positives = 56/130 (43%), Gaps = 14/130 (10%) Query: 27 LYQIDIIGCSTTEII---SEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHI 83 LY+ + G T E I S+ A T L +V I+ GV + + I Sbjct: 2 LYEAHVRGWDTPEGIFSLSQLRQDETTAQTPLPAYAVE----------ILEGVAEHLERI 51 Query: 84 DLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEP 143 D +++ ++ W R+ + +I+R E++ V V I+ + IA + + P Sbjct: 52 DAALATY-SKAWPLHRMPEVDLAIMRVAAWEILFNPDVTGPVAITAAMQIAEERSTDESP 110 Query: 144 KFINAVLDKV 153 KFIN +L + Sbjct: 111 KFINGLLGAI 120 >gi|313888508|ref|ZP_07822175.1| ribosomal RNA small subunit methyltransferase B [Peptoniphilus harei ACS-146-V-Sch2b] gi|312845537|gb|EFR32931.1| ribosomal RNA small subunit methyltransferase B [Peptoniphilus harei ACS-146-V-Sch2b] Length = 430 Score = 38.1 bits (87), Expect = 0.46, Method: Compositional matrix adjust. Identities = 26/98 (26%), Positives = 49/98 (50%), Gaps = 6/98 (6%) Query: 65 DLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVE 124 D + + I GV+ K ++D +I K F+R+ I+ SIL + ++ VP Sbjct: 38 DFAFIKEITTGVVRNKTYLDYVIRE--NSKVRFNRIHKIILSILEMAIYQMYFLDKVPDY 95 Query: 125 VIISEYVCIAHDFFYGDEP--KFINAVLDKVSRKEEIK 160 I+ E V +A YG++ F N +L +S+++ ++ Sbjct: 96 SIVDESVNLAK--IYGNKGSISFTNGILRSISKEKHLQ 131 >gi|160893229|ref|ZP_02074017.1| hypothetical protein CLOL250_00775 [Clostridium sp. L2-50] gi|156865312|gb|EDO58743.1| hypothetical protein CLOL250_00775 [Clostridium sp. L2-50] Length = 144 Score = 38.1 bits (87), Expect = 0.47, Method: Compositional matrix adjust. Identities = 25/82 (30%), Positives = 42/82 (51%), Gaps = 1/82 (1%) Query: 73 IHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVC 132 + V+ ID IS +++ W R+ +ILR V E+ +PV+V I+E V Sbjct: 63 VEAVVSHITEIDETISG-ISQGWKLGRIGKAELAILRLAVYEIKFDEDIPVKVAINEAVE 121 Query: 133 IAHDFFYGDEPKFINAVLDKVS 154 +A + + FINA+L K++ Sbjct: 122 LAKTYCDVEAKSFINALLAKLA 143 >gi|86143181|ref|ZP_01061583.1| putative N utilization substance protein [Leeuwenhoekiella blandensis MED217] gi|85830086|gb|EAQ48546.1| putative N utilization substance protein [Leeuwenhoekiella blandensis MED217] Length = 304 Score = 38.1 bits (87), Expect = 0.47, Method: Compositional matrix adjust. Identities = 17/65 (26%), Positives = 36/65 (55%) Query: 92 TEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLD 151 T W R+ + +++ + E + S+PV+V I+EY+ ++ ++ F+N VLD Sbjct: 224 TPNWDQDRIAALDKILIKMALCEFLRFSSIPVKVTINEYLELSKEYSTPKSSIFVNGVLD 283 Query: 152 KVSRK 156 ++ +K Sbjct: 284 RLVKK 288 >gi|94311627|ref|YP_584837.1| transcription antitermination protein NusB [Cupriavidus metallidurans CH34] gi|119390804|sp|Q1LJV8|NUSB_RALME RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|93355479|gb|ABF09568.1| transcription termination factor, N utilization substance protein B-like protein(Protein nusB) [Cupriavidus metallidurans CH34] Length = 171 Score = 37.7 bits (86), Expect = 0.49, Method: Compositional matrix adjust. Identities = 25/87 (28%), Positives = 44/87 (50%), Gaps = 12/87 (13%) Query: 80 KQHIDLLISSCLTEKWSFSR-----LDMI---LCSILRAGVL----ELIECHSVPVEVII 127 ++H D L+ + E+ + LD L + RA +L EL+ C +P +V+I Sbjct: 73 REHFDALLGGAVREEARLTAAFEPFLDRTVDELSPVERAALLVGSYELVHCLDIPYKVVI 132 Query: 128 SEYVCIAHDFFYGDEPKFINAVLDKVS 154 +E V + F + K++N VLDK++ Sbjct: 133 NEAVELTKTFGGVEGYKYVNGVLDKLA 159 >gi|168210626|ref|ZP_02636251.1| ribosomal RNA small subunit methyltransferase B [Clostridium perfringens B str. ATCC 3626] gi|168214218|ref|ZP_02639843.1| ribosomal RNA small subunit methyltransferase B [Clostridium perfringens CPE str. F4969] gi|168217028|ref|ZP_02642653.1| ribosomal RNA small subunit methyltransferase B [Clostridium perfringens NCTC 8239] gi|182625836|ref|ZP_02953602.1| ribosomal RNA small subunit methyltransferase B [Clostridium perfringens D str. JGS1721] gi|170711319|gb|EDT23501.1| ribosomal RNA small subunit methyltransferase B [Clostridium perfringens B str. ATCC 3626] gi|170714316|gb|EDT26498.1| ribosomal RNA small subunit methyltransferase B [Clostridium perfringens CPE str. F4969] gi|177908870|gb|EDT71362.1| ribosomal RNA small subunit methyltransferase B [Clostridium perfringens D str. JGS1721] gi|182380885|gb|EDT78364.1| ribosomal RNA small subunit methyltransferase B [Clostridium perfringens NCTC 8239] Length = 442 Score = 37.7 bits (86), Expect = 0.50, Method: Compositional matrix adjust. Identities = 24/89 (26%), Positives = 47/89 (52%), Gaps = 10/89 (11%) Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131 +++G + K+ ID+++SS + + ++D + +ILR+ + ++ VP I++E V Sbjct: 45 VVYGTIKYKKMIDIILSSFVAD---IGKIDESVVNILRSAIYQMKFLDRVPPYAIVNEAV 101 Query: 132 CIAHDFFYGDEP---KFINAVLDKVSRKE 157 + + EP KF+N VL R E Sbjct: 102 NLTKE----TEPNLAKFVNGVLRNYLRNE 126 >gi|328881116|emb|CCA54355.1| Ribosomal RNA small subunit methyltransferase B [Streptomyces venezuelae ATCC 10712] Length = 470 Score = 37.7 bits (86), Expect = 0.50, Method: Compositional matrix adjust. Identities = 22/86 (25%), Positives = 43/86 (50%), Gaps = 3/86 (3%) Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131 +++G + R+ D +IS+C+ +D + +L G +L+ +P +S V Sbjct: 67 LVYGTLRRQGTYDAIISACVDRP--LREVDPPVLDVLALGAHQLLGTR-IPTHAAVSASV 123 Query: 132 CIAHDFFYGDEPKFINAVLDKVSRKE 157 +A KF+NAVL K+S+++ Sbjct: 124 ELARVVLGDGRAKFVNAVLRKISQQD 149 >gi|269218525|ref|ZP_06162379.1| B-like utilization substance protein [Actinomyces sp. oral taxon 848 str. F0332] gi|269211636|gb|EEZ77976.1| B-like utilization substance protein [Actinomyces sp. oral taxon 848 str. F0332] Length = 171 Score = 37.7 bits (86), Expect = 0.51, Method: Compositional matrix adjust. Identities = 22/83 (26%), Positives = 42/83 (50%), Gaps = 2/83 (2%) Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131 I+ + ID ++ + +E W+ SR++ + SILRA EL+ + V I E+ Sbjct: 66 IVEAYAENADDIDTIVEAA-SEDWAMSRMNAVDRSILRAAAAELVYVGTDRFHV-IPEWA 123 Query: 132 CIAHDFFYGDEPKFINAVLDKVS 154 +A ++ F+ VL++V+ Sbjct: 124 SLAREYSTERSVGFVMGVLNRVA 146 >gi|298373502|ref|ZP_06983491.1| NusB family protein [Bacteroidetes oral taxon 274 str. F0058] gi|298274554|gb|EFI16106.1| NusB family protein [Bacteroidetes oral taxon 274 str. F0058] Length = 307 Score = 37.7 bits (86), Expect = 0.51, Method: Compositional matrix adjust. Identities = 19/77 (24%), Positives = 40/77 (51%), Gaps = 2/77 (2%) Query: 89 SCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINA 148 S + KW R+ + +++ + E E +P+++ I+EY+ I+ + FIN Sbjct: 229 SKIVPKWDVERITKMDMVLMKMAIAEFKEFPLIPIDITINEYIEISKFYSTSKSYIFING 288 Query: 149 VLDKVSRKEEIKRSGCV 165 +LD +++ E+ SG + Sbjct: 289 ILDTIAK--EMLASGSM 303 >gi|218246294|ref|YP_002371665.1| transcription antitermination protein NusB [Cyanothece sp. PCC 8801] gi|254772631|sp|B7K4P4|NUSB_CYAP8 RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|218166772|gb|ACK65509.1| NusB antitermination factor [Cyanothece sp. PCC 8801] Length = 211 Score = 37.7 bits (86), Expect = 0.51, Method: Compositional matrix adjust. Identities = 25/85 (29%), Positives = 44/85 (51%), Gaps = 2/85 (2%) Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131 +I V R+ ID + + L + W +RL I ILR V E++ +P +V I+E + Sbjct: 123 LIGAVNRRRTEIDQQLEAVLVD-WQLNRLPKIDRDILRIAVAEILFLE-IPNKVAINEAI 180 Query: 132 CIAHDFFYGDEPKFINAVLDKVSRK 156 +A + + +FIN VL + + + Sbjct: 181 EMAKRYSDDEGYRFINGVLRRFTER 205 >gi|110800441|ref|YP_696427.1| ribosomal RNA small subunit methyltransferase B [Clostridium perfringens ATCC 13124] gi|110675088|gb|ABG84075.1| ribosomal RNA small subunit methyltransferase B [Clostridium perfringens ATCC 13124] Length = 442 Score = 37.7 bits (86), Expect = 0.51, Method: Compositional matrix adjust. Identities = 24/89 (26%), Positives = 47/89 (52%), Gaps = 10/89 (11%) Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131 +++G + K+ ID+++SS + + ++D + +ILR+ + ++ VP I++E V Sbjct: 45 VVYGTIKYKKMIDIILSSFVAD---IGKIDESVVNILRSAIYQMKFLDRVPPYAIVNEAV 101 Query: 132 CIAHDFFYGDEP---KFINAVLDKVSRKE 157 + + EP KF+N VL R E Sbjct: 102 NLTKE----TEPNLAKFVNGVLRNYLRNE 126 >gi|198277117|ref|ZP_03209648.1| hypothetical protein BACPLE_03325 [Bacteroides plebeius DSM 17135] gi|198269615|gb|EDY93885.1| hypothetical protein BACPLE_03325 [Bacteroides plebeius DSM 17135] Length = 308 Score = 37.7 bits (86), Expect = 0.52, Method: Compositional matrix adjust. Identities = 18/62 (29%), Positives = 34/62 (54%) Query: 92 TEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLD 151 ++ W SR+ ++ I++ + E++ ++PV V ++EYV IA + FIN LD Sbjct: 234 SKNWDLSRVAVMDVIIMQIALAEILSFPNIPVNVSLNEYVEIAKLYSTPKSGGFINGTLD 293 Query: 152 KV 153 + Sbjct: 294 GI 295 >gi|113474580|ref|YP_720641.1| transcription antitermination protein NusB [Trichodesmium erythraeum IMS101] gi|119390846|sp|Q118A6|NUSB_TRIEI RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|110165628|gb|ABG50168.1| NusB antitermination factor [Trichodesmium erythraeum IMS101] Length = 207 Score = 37.7 bits (86), Expect = 0.52, Method: Compositional matrix adjust. Identities = 26/82 (31%), Positives = 41/82 (50%), Gaps = 2/82 (2%) Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131 ++ V ++ +D L+ + + W RL I ILR V E++ + +V ISE V Sbjct: 121 VLTKVNGNRKEVDKLLQESIVD-WQIERLPRIDLDILRIAVAEMM-FIGIQKQVAISEAV 178 Query: 132 CIAHDFFYGDEPKFINAVLDKV 153 +A + D KFIN VL +V Sbjct: 179 ELAKRYSGEDGYKFINGVLRRV 200 >gi|262037941|ref|ZP_06011361.1| transcription antitermination factor NusB [Leptotrichia goodfellowii F0264] gi|261748019|gb|EEY35438.1| transcription antitermination factor NusB [Leptotrichia goodfellowii F0264] Length = 136 Score = 37.7 bits (86), Expect = 0.55, Method: Compositional matrix adjust. Identities = 21/70 (30%), Positives = 39/70 (55%), Gaps = 2/70 (2%) Query: 87 ISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFI 146 I S L E W++ RL + ++L+ E I ++ E+ I+E + IA + Y D +F+ Sbjct: 64 IKSIL-EGWTYERLGTLEKALLKIAFYE-ITIKNIGYEIAINEVLEIAKKYSYDDTKEFL 121 Query: 147 NAVLDKVSRK 156 N +L ++ +K Sbjct: 122 NGILAQLVKK 131 >gi|317124726|ref|YP_004098838.1| NusB antitermination factor [Intrasporangium calvum DSM 43043] gi|315588814|gb|ADU48111.1| NusB antitermination factor [Intrasporangium calvum DSM 43043] Length = 137 Score = 37.7 bits (86), Expect = 0.56, Method: Compositional matrix adjust. Identities = 34/139 (24%), Positives = 63/139 (45%), Gaps = 12/139 (8%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 R AR A+ L++ D G + ++ E D E + DL + G Sbjct: 4 RSKARARALDILFEADQRGLNAEVLLDER-----LRDPESRAGNNPYTADL------VRG 52 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135 V+ R + ID ++ ++ W+ R+ + +ILR G E++ +P I+E V +A Sbjct: 53 VVGRWRDIDAALTDY-SQGWTLDRMPAVDRAILRVGAWEVLFNDDIPDAAAIAEAVALAT 111 Query: 136 DFFYGDEPKFINAVLDKVS 154 + + P F+N +L ++S Sbjct: 112 ELSTDESPGFVNGLLARLS 130 >gi|124021724|ref|YP_001016031.1| transcription antitermination protein NusB [Prochlorococcus marinus str. MIT 9303] gi|123962010|gb|ABM76766.1| Antitermination protein NusB [Prochlorococcus marinus str. MIT 9303] Length = 211 Score = 37.7 bits (86), Expect = 0.57, Method: Compositional matrix adjust. Identities = 25/78 (32%), Positives = 40/78 (51%), Gaps = 2/78 (2%) Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135 V++++ ID I + + E W SRL I ILR V++L + P V +E V +AH Sbjct: 127 VIEKRNSIDASIDAVM-EGWRLSRLPRIDRDILRLAVVDLTALQT-PSAVACNEAVELAH 184 Query: 136 DFFYGDEPKFINAVLDKV 153 + + IN VL ++ Sbjct: 185 RYSDDQGRRMINGVLRRL 202 >gi|167037728|ref|YP_001665306.1| sun protein [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|320116143|ref|YP_004186302.1| sun protein [Thermoanaerobacter brockii subsp. finnii Ako-1] gi|166856562|gb|ABY94970.1| sun protein [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|319929234|gb|ADV79919.1| sun protein [Thermoanaerobacter brockii subsp. finnii Ako-1] Length = 444 Score = 37.7 bits (86), Expect = 0.58, Method: Compositional matrix adjust. Identities = 26/95 (27%), Positives = 45/95 (47%), Gaps = 5/95 (5%) Query: 64 VDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPV 123 +D + + ++ GV++RK +D ++S + + D+ L G+ +L+ VP Sbjct: 37 IDRGFTKELVFGVIERKYTLDFILSFFVKKAP-----DLKTMIFLEMGLYQLLYMDKVPS 91 Query: 124 EVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEE 158 I+E V IA FINAVL R++E Sbjct: 92 YAAINETVNIAKKVLGIKRANFINAVLRNYDREKE 126 >gi|71066624|ref|YP_265351.1| NusB antitermination factor [Psychrobacter arcticus 273-4] gi|119390801|sp|Q4FPZ1|NUSB_PSYA2 RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|71039609|gb|AAZ19917.1| probable NusB antitermination factor [Psychrobacter arcticus 273-4] Length = 375 Score = 37.7 bits (86), Expect = 0.59, Method: Compositional matrix adjust. Identities = 26/84 (30%), Positives = 47/84 (55%), Gaps = 4/84 (4%) Query: 74 HGVM-DRKQHIDLLISSCLTEKWS--FSRLDMILCSILRAGVLELIECHSVPVEVIISEY 130 H +M D + ID L ++ +T++ ++LD + +IL G EL +P +V++ E Sbjct: 107 HEMMRDIPEQIDAL-NTLITQQLDREINKLDTVEHAILLIGAYELQNRLEIPYKVVLDEA 165 Query: 131 VCIAHDFFYGDEPKFINAVLDKVS 154 + + + F D K INAVLD+++ Sbjct: 166 MKLNNHFGATDAHKLINAVLDRMA 189 >gi|145219990|ref|YP_001130699.1| sun protein [Prosthecochloris vibrioformis DSM 265] gi|145206154|gb|ABP37197.1| sun protein [Chlorobium phaeovibrioides DSM 265] Length = 445 Score = 37.7 bits (86), Expect = 0.59, Method: Compositional matrix adjust. Identities = 25/97 (25%), Positives = 46/97 (47%), Gaps = 2/97 (2%) Query: 58 ESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIE 117 ES D + +++GV+ + +D +I + + + + +ILR G +L+ Sbjct: 32 ESSLSRTDRAFATSLVNGVLRYRLQLDFVIGHFYSH--NLQKASPAIRNILRLGAWQLLF 89 Query: 118 CHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVS 154 VP +++E V +A F K +NAVL K+S Sbjct: 90 LDRVPAWAVVNESVRLARRFKGERMAKLVNAVLRKIS 126 >gi|83816060|ref|YP_444173.1| transcription antitermination factor NusB [Salinibacter ruber DSM 13855] gi|294505831|ref|YP_003569889.1| N utilization substance protein B homolog [Salinibacter ruber M8] gi|119390817|sp|Q2S6K8|NUSB_SALRD RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|83757454|gb|ABC45567.1| transcription antitermination factor NusB [Salinibacter ruber DSM 13855] gi|294342159|emb|CBH22937.1| N utilization substance protein B homolog [Salinibacter ruber M8] Length = 160 Score = 37.7 bits (86), Expect = 0.60, Method: Compositional matrix adjust. Identities = 18/61 (29%), Positives = 30/61 (49%) Query: 93 EKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDK 152 + W R+ I S+LR EL++ VP +V + E + IA + F+N V+D Sbjct: 70 DNWEIHRIAAIDRSLLRMATTELLKFEEVPPKVSVDEAIEIAKRYSTPRSGTFVNGVIDA 129 Query: 153 V 153 + Sbjct: 130 I 130 >gi|307264803|ref|ZP_07546365.1| sun protein [Thermoanaerobacter wiegelii Rt8.B1] gi|306920061|gb|EFN50273.1| sun protein [Thermoanaerobacter wiegelii Rt8.B1] Length = 444 Score = 37.7 bits (86), Expect = 0.61, Method: Compositional matrix adjust. Identities = 26/96 (27%), Positives = 45/96 (46%), Gaps = 5/96 (5%) Query: 63 HVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVP 122 +D + + ++ GV++RK +D ++S + + D+ L G+ +L+ VP Sbjct: 36 EIDRGFTKELVFGVIERKYTLDFILSFFVKKAP-----DLKTMIFLEMGLYQLLYMDKVP 90 Query: 123 VEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEE 158 I+E V IA FINAVL R++E Sbjct: 91 SYAAINETVNIAKKVLGIKRANFINAVLRNYEREKE 126 >gi|291287239|ref|YP_003504055.1| NusB antitermination factor [Denitrovibrio acetiphilus DSM 12809] gi|290884399|gb|ADD68099.1| NusB antitermination factor [Denitrovibrio acetiphilus DSM 12809] Length = 147 Score = 37.7 bits (86), Expect = 0.61, Method: Compositional matrix adjust. Identities = 34/149 (22%), Positives = 61/149 (40%), Gaps = 14/149 (9%) Query: 7 KKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDL 66 KK+ K R R A +YQ+ I + EI T F + + ESV + Sbjct: 2 KKNFKARTR---GRKFAYMMMYQLIIADYTPKEI-----TKTFWNSVKEEDESV-----I 48 Query: 67 EWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVI 126 E+ + G + D +I + W++ R+ + ILR V EL P + Sbjct: 49 EFANRLFTGAAESVDANDEIICRYIRSDWTYERMGEVEKDILRVAVHELFR-QEAPYYAV 107 Query: 127 ISEYVCIAHDFFYGDEPKFINAVLDKVSR 155 I+++V +A + +N +L+ + + Sbjct: 108 INDFVTLARKYSDEKSASLVNGILENIRK 136 >gi|320011939|gb|ADW06789.1| Fmu (Sun) domain protein [Streptomyces flavogriseus ATCC 33331] Length = 477 Score = 37.7 bits (86), Expect = 0.62, Method: Compositional matrix adjust. Identities = 22/83 (26%), Positives = 41/83 (49%), Gaps = 3/83 (3%) Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131 +++G + R+ D ++++C+ +D + +L GV +L+ +P +S V Sbjct: 67 LVYGTLRRQGTYDAIVAACIDR--PLREVDPPVLDVLNMGVHQLLGTR-IPTHAAVSASV 123 Query: 132 CIAHDFFYGDEPKFINAVLDKVS 154 +A KF+NAVL KVS Sbjct: 124 ELARVVLGEGRAKFVNAVLRKVS 146 >gi|257059341|ref|YP_003137229.1| transcription antitermination protein NusB [Cyanothece sp. PCC 8802] gi|256589507|gb|ACV00394.1| NusB antitermination factor [Cyanothece sp. PCC 8802] Length = 235 Score = 37.7 bits (86), Expect = 0.62, Method: Compositional matrix adjust. Identities = 26/90 (28%), Positives = 46/90 (51%), Gaps = 2/90 (2%) Query: 67 EWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVI 126 E+ +I V R+ ID + + L + W +RL I ILR V E++ +P +V Sbjct: 142 EYALELIGAVNRRRTEIDQQLEAVLVD-WQLNRLPKIDRDILRIAVAEILFLE-IPNKVA 199 Query: 127 ISEYVCIAHDFFYGDEPKFINAVLDKVSRK 156 I+E + +A + + +FIN VL + + + Sbjct: 200 INEAIEMAKRYSDDEGYRFINGVLRRFTER 229 >gi|326389542|ref|ZP_08211109.1| sun protein [Thermoanaerobacter ethanolicus JW 200] gi|325994547|gb|EGD52972.1| sun protein [Thermoanaerobacter ethanolicus JW 200] Length = 444 Score = 37.4 bits (85), Expect = 0.62, Method: Compositional matrix adjust. Identities = 26/96 (27%), Positives = 45/96 (46%), Gaps = 5/96 (5%) Query: 63 HVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVP 122 +D + + ++ GV++RK +D ++S + + D+ L G+ +L+ VP Sbjct: 36 EIDRGFTKELVFGVIERKYTLDFILSFFVKKAP-----DLKTMIFLEMGLYQLLYMDKVP 90 Query: 123 VEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEE 158 I+E V IA FINAVL R++E Sbjct: 91 SYAAINETVNIAKKVLGIKRANFINAVLRNYEREKE 126 >gi|228470129|ref|ZP_04055038.1| NusB family protein [Porphyromonas uenonis 60-3] gi|228308267|gb|EEK17122.1| NusB family protein [Porphyromonas uenonis 60-3] Length = 347 Score = 37.4 bits (85), Expect = 0.63, Method: Compositional matrix adjust. Identities = 19/74 (25%), Positives = 39/74 (52%), Gaps = 1/74 (1%) Query: 80 KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139 ++ D +++ L + W R+ ++ ++ V E + C + + V I+EY+ +A + Sbjct: 263 REEYDAMLTPRL-DNWEQDRVALVDMILMEMAVAEALSCPDIALVVTINEYIELAKVYDN 321 Query: 140 GDEPKFINAVLDKV 153 FINAVLD++ Sbjct: 322 AKSASFINAVLDRL 335 >gi|213858030|ref|ZP_03385001.1| transcription antitermination protein NusB [Salmonella enterica subsp. enterica serovar Typhi str. M223] Length = 59 Score = 37.4 bits (85), Expect = 0.64, Method: Compositional matrix adjust. Identities = 19/49 (38%), Positives = 29/49 (59%) Query: 106 SILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVS 154 ++LR + EL + VP +V I+E + +A F D KF+N VLDK + Sbjct: 3 AVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVLDKAA 51 >gi|332294978|ref|YP_004436901.1| NusB antitermination factor [Thermodesulfobium narugense DSM 14796] gi|332178081|gb|AEE13770.1| NusB antitermination factor [Thermodesulfobium narugense DSM 14796] Length = 134 Score = 37.4 bits (85), Expect = 0.66, Method: Compositional matrix adjust. Identities = 37/137 (27%), Positives = 64/137 (46%), Gaps = 18/137 (13%) Query: 20 RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79 R ++ LY+++I ST ++ + R+ + + D E+ RV G+++ Sbjct: 9 REMVLKILYELEINSQSTINVLMQ----RYAEHIQPE--------DFEFIRVRAEGIIEN 56 Query: 80 KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139 K ID L+ L+ W R+ + I+ V E+ P + I+E V ++ Y Sbjct: 57 KDAIDKLLDE-LSIDWPTERMVVTDRLIMEIAVFEMNYLKLSP-SIAINEAVELSK--LY 112 Query: 140 GDEP--KFINAVLDKVS 154 G E KF+NAVL KV+ Sbjct: 113 GTEKSYKFVNAVLSKVA 129 >gi|15895002|ref|NP_348351.1| rRNA methylase [Clostridium acetobutylicum ATCC 824] gi|15024692|gb|AAK79691.1|AE007682_1 Predicted rRNA methylase, SUN family [Clostridium acetobutylicum ATCC 824] gi|325509139|gb|ADZ20775.1| rRNA methylase, SUN family [Clostridium acetobutylicum EA 2018] Length = 441 Score = 37.4 bits (85), Expect = 0.67, Method: Compositional matrix adjust. Identities = 23/88 (26%), Positives = 43/88 (48%), Gaps = 2/88 (2%) Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131 I++G + K ID++IS + K +++D + ++LR + ++ +P ++E V Sbjct: 46 IVYGTIKYKYSIDIIISKFVKTK--INKIDKRVLNVLRMSIYQIRYLDKIPDFAAVNEAV 103 Query: 132 CIAHDFFYGDEPKFINAVLDKVSRKEEI 159 I + KF+NAVL R I Sbjct: 104 NITKKYISLKSSKFVNAVLRNYLRNPNI 131 >gi|269797978|ref|YP_003311878.1| NusB antitermination factor [Veillonella parvula DSM 2008] gi|269094607|gb|ACZ24598.1| NusB antitermination factor [Veillonella parvula DSM 2008] Length = 134 Score = 37.4 bits (85), Expect = 0.67, Method: Compositional matrix adjust. Identities = 30/107 (28%), Positives = 52/107 (48%), Gaps = 6/107 (5%) Query: 52 DTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISS-CLTEKWSFSRLDMILCSILRA 110 D + +++ +D + II GV+ + ID + C + K + LD + SILR Sbjct: 29 DVQFPEGNIHKAMDKAYANSIIEGVLSNAEAIDATLQPFCKSRK--VANLDKVDRSILRI 86 Query: 111 GVLELIECHSVPVE--VIISEYVCIAHDFFYGDEPKFINAVLDKVSR 155 V E+ P+E + I+E + +A +F K INA+LD ++ Sbjct: 87 AVWEM-NNKVEPLEPSIAINEAIQLAKEFGSDASYKLINAILDAYNK 132 >gi|255007968|ref|ZP_05280094.1| putative N utilization substance protein [Bacteroides fragilis 3_1_12] gi|313145684|ref|ZP_07807877.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12] gi|313134451|gb|EFR51811.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12] Length = 308 Score = 37.4 bits (85), Expect = 0.69, Method: Compositional matrix adjust. Identities = 20/75 (26%), Positives = 39/75 (52%), Gaps = 2/75 (2%) Query: 92 TEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLD 151 T+ W R+ + I++ + E++ ++PV V ++EYV IA + FIN LD Sbjct: 234 TKNWDLDRVAFMDVIIMQCALAEILSFPNIPVSVSLNEYVEIAKLYSTVKSGSFINGTLD 293 Query: 152 KVSRKEEIKRSGCVS 166 + ++K+ G ++ Sbjct: 294 GIVN--QLKKEGKLT 306 >gi|253563478|ref|ZP_04840935.1| conserved hypothetical protein [Bacteroides sp. 3_2_5] gi|265762654|ref|ZP_06091222.1| conserved hypothetical protein [Bacteroides sp. 2_1_16] gi|251947254|gb|EES87536.1| conserved hypothetical protein [Bacteroides sp. 3_2_5] gi|263255262|gb|EEZ26608.1| conserved hypothetical protein [Bacteroides sp. 2_1_16] Length = 308 Score = 37.4 bits (85), Expect = 0.69, Method: Compositional matrix adjust. Identities = 20/75 (26%), Positives = 39/75 (52%), Gaps = 2/75 (2%) Query: 92 TEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLD 151 T+ W R+ + I++ + E++ ++PV V ++EYV IA + FIN LD Sbjct: 234 TKNWDLDRVAFMDVIIMQCALAEILSFPNIPVSVSLNEYVEIAKLYSTVKSGSFINGTLD 293 Query: 152 KVSRKEEIKRSGCVS 166 + ++K+ G ++ Sbjct: 294 GIVN--QLKKEGKLT 306 >gi|238019309|ref|ZP_04599735.1| hypothetical protein VEIDISOL_01173 [Veillonella dispar ATCC 17748] gi|237864008|gb|EEP65298.1| hypothetical protein VEIDISOL_01173 [Veillonella dispar ATCC 17748] Length = 134 Score = 37.4 bits (85), Expect = 0.69, Method: Compositional matrix adjust. Identities = 28/106 (26%), Positives = 50/106 (47%), Gaps = 4/106 (3%) Query: 52 DTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISS-CLTEKWSFSRLDMILCSILRA 110 D + ++ +D + II+GV+ + ID + C + K LD + +ILR Sbjct: 29 DVQFPEGHMHKSMDKAYANSIINGVLSASETIDATLQPFCKSRK--VENLDKVDRAILRI 86 Query: 111 GVLELI-ECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSR 155 + E+ E + + I+E + +A DF K INA+LD ++ Sbjct: 87 ALWEMTNEADPLEPSIAINEAIQLAKDFGSDSSYKLINAILDAYNK 132 >gi|332879944|ref|ZP_08447629.1| putative transcription antitermination factor NusB [Capnocytophaga sp. oral taxon 329 str. F0087] gi|332682155|gb|EGJ55067.1| putative transcription antitermination factor NusB [Capnocytophaga sp. oral taxon 329 str. F0087] Length = 313 Score = 37.4 bits (85), Expect = 0.70, Method: Compositional matrix adjust. Identities = 21/73 (28%), Positives = 41/73 (56%), Gaps = 4/73 (5%) Query: 95 WSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLD--- 151 W R+ ++ +L+ V EL+ S+P++V I+EY+ ++ ++ FIN +L+ Sbjct: 237 WDKERVAVLDNILLKMAVCELLYFPSIPIKVTINEYLELSKEYSTPKSSLFINGILNVIH 296 Query: 152 -KVSRKEEIKRSG 163 ++ KE IK+ G Sbjct: 297 KELEEKELIKKIG 309 >gi|150006310|ref|YP_001301054.1| putative N utilization substance protein [Bacteroides vulgatus ATCC 8482] gi|212691834|ref|ZP_03299962.1| hypothetical protein BACDOR_01329 [Bacteroides dorei DSM 17855] gi|237708040|ref|ZP_04538521.1| conserved hypothetical protein [Bacteroides sp. 9_1_42FAA] gi|237724809|ref|ZP_04555290.1| conserved hypothetical protein [Bacteroides sp. D4] gi|254885163|ref|ZP_05257873.1| conserved hypothetical protein [Bacteroides sp. 4_3_47FAA] gi|265756189|ref|ZP_06090518.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA] gi|294776295|ref|ZP_06741779.1| transcription antitermination factor NusB [Bacteroides vulgatus PC510] gi|319641350|ref|ZP_07996045.1| N utilization substance protein [Bacteroides sp. 3_1_40A] gi|149934734|gb|ABR41432.1| putative N utilization substance protein [Bacteroides vulgatus ATCC 8482] gi|212665590|gb|EEB26162.1| hypothetical protein BACDOR_01329 [Bacteroides dorei DSM 17855] gi|229437004|gb|EEO47081.1| conserved hypothetical protein [Bacteroides dorei 5_1_36/D4] gi|229457868|gb|EEO63589.1| conserved hypothetical protein [Bacteroides sp. 9_1_42FAA] gi|254837956|gb|EET18265.1| conserved hypothetical protein [Bacteroides sp. 4_3_47FAA] gi|263233780|gb|EEZ19389.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA] gi|294449882|gb|EFG18398.1| transcription antitermination factor NusB [Bacteroides vulgatus PC510] gi|317387031|gb|EFV67915.1| N utilization substance protein [Bacteroides sp. 3_1_40A] Length = 308 Score = 37.4 bits (85), Expect = 0.73, Method: Compositional matrix adjust. Identities = 21/68 (30%), Positives = 35/68 (51%), Gaps = 1/68 (1%) Query: 86 LISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKF 145 LIS T+ W R+ + I++ + E++ ++PV V ++EYV IA + F Sbjct: 229 LISEN-TKNWDLDRVAFMDVVIMQIALAEILSFPNIPVSVSLNEYVEIAKLYSTPKSGGF 287 Query: 146 INAVLDKV 153 IN LD + Sbjct: 288 INGTLDGI 295 >gi|326780519|ref|ZP_08239784.1| Fmu (Sun) domain protein [Streptomyces cf. griseus XylebKG-1] gi|326660852|gb|EGE45698.1| Fmu (Sun) domain protein [Streptomyces cf. griseus XylebKG-1] Length = 477 Score = 37.4 bits (85), Expect = 0.74, Method: Compositional matrix adjust. Identities = 36/157 (22%), Positives = 64/157 (40%), Gaps = 14/157 (8%) Query: 1 MTIQDNKKDLKLSHRRG---IARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDV 57 M Q ++ K HRR R A +AL +D ++ + A + D Sbjct: 1 MNDQPRRRPAK-PHRRPKKDPVRFLAFEALRAVDERDAYANLVLPPL-LKKARAKGDFDA 58 Query: 58 ESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIE 117 L +L ++G + R+ D ++++C+ +D + +L GV +L+ Sbjct: 59 RDAALATEL------VYGTLRRQGTYDAIVAACIDR--PLREVDPPVLDVLNMGVHQLLG 110 Query: 118 CHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVS 154 +P +S V +A KF+NAVL KV+ Sbjct: 111 TR-IPTHAAVSASVELARVVLGEGRAKFVNAVLRKVT 146 >gi|182439855|ref|YP_001827574.1| putative RNA-binding Sun protein [Streptomyces griseus subsp. griseus NBRC 13350] gi|178468371|dbj|BAG22891.1| putative RNA-binding Sun protein [Streptomyces griseus subsp. griseus NBRC 13350] Length = 477 Score = 37.4 bits (85), Expect = 0.74, Method: Compositional matrix adjust. Identities = 36/157 (22%), Positives = 64/157 (40%), Gaps = 14/157 (8%) Query: 1 MTIQDNKKDLKLSHRRG---IARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDV 57 M Q ++ K HRR R A +AL +D ++ + A + D Sbjct: 1 MNDQPRRRPAK-PHRRPKKDPVRFLAFEALRAVDERDAYANLVLPPL-LKKARAKGDFDA 58 Query: 58 ESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIE 117 L +L ++G + R+ D ++++C+ +D + +L GV +L+ Sbjct: 59 RDAALATEL------VYGTLRRQGTYDAIVAACIDR--PLREVDPPVLDVLNMGVHQLLG 110 Query: 118 CHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVS 154 +P +S V +A KF+NAVL KV+ Sbjct: 111 TR-IPTHAAVSASVELARVVLGEGRAKFVNAVLRKVT 146 >gi|119896608|ref|YP_931821.1| transcription antitermination protein NusB [Azoarcus sp. BH72] gi|166215662|sp|A1K279|NUSB_AZOSB RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|119669021|emb|CAL92934.1| putative N utilization substance protein B [Azoarcus sp. BH72] Length = 155 Score = 37.4 bits (85), Expect = 0.76, Method: Compositional matrix adjust. Identities = 35/134 (26%), Positives = 58/134 (43%), Gaps = 12/134 (8%) Query: 23 AVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQH 82 A+Q +YQ + G S + + E AD + VD E F +++ G +D Sbjct: 14 ALQGVYQWLLSGNSPQVVEAHVEAE--AAD--------FDKVDRELFVMLLRGTLDNVGA 63 Query: 83 IDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDE 142 + S + L I +IL G EL P V+I+E + +A + D Sbjct: 64 LQDEFSPFIHR--PIEELSPIERAILLLGTHELKHNIETPYRVVINEAIELAKAYGGTDG 121 Query: 143 PKFINAVLDKVSRK 156 +F+N VLDK++ + Sbjct: 122 HRFVNGVLDKLAAR 135 >gi|294155614|ref|YP_003559998.1| transcription anti-termination factor NusB [Mycoplasma crocodyli MP145] gi|291600060|gb|ADE19556.1| transcription anti-termination factor NusB [Mycoplasma crocodyli MP145] Length = 150 Score = 37.4 bits (85), Expect = 0.76, Method: Compositional matrix adjust. Identities = 32/152 (21%), Positives = 69/152 (45%), Gaps = 26/152 (17%) Query: 9 DLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEW 68 ++K S R+ R +Q LY+ ++ I+ ++ + F ++ ++ Sbjct: 2 EVKKSRRQN--REEVIQVLYRFELFNEKIDAAIA-FQEFSFLSNEQVK------------ 46 Query: 69 FRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIIS 128 I + + + +I+ L + W++ R+ ++ +IL EL ++P ++I+ Sbjct: 47 ---FIEKIDNNYDFLKSIIAKFLNQNWAWLRIPPLIKAILINASAELF---TIPPRIVIN 100 Query: 129 EYVCIAHDFF---YGDEP--KFINAVLDKVSR 155 E V I D+F D+ KF+NA+L V + Sbjct: 101 EAVEITKDYFCMTPDDDKYYKFVNAILQNVYK 132 >gi|172057934|ref|YP_001814394.1| sun protein [Exiguobacterium sibiricum 255-15] gi|171990455|gb|ACB61377.1| sun protein [Exiguobacterium sibiricum 255-15] Length = 446 Score = 37.4 bits (85), Expect = 0.76, Method: Compositional matrix adjust. Identities = 26/105 (24%), Positives = 48/105 (45%), Gaps = 3/105 (2%) Query: 64 VDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPV 123 D+ + +++G + R+ +D ++ LT++ +LD + +LR V +L +P Sbjct: 37 ADVGLYTELVYGTLSRELTLDYILEPFLTKQ---KKLDPFMRPLLRMSVYQLFYLDRIPD 93 Query: 124 EVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRSGCVSAI 168 +I+E V IA K +N VL V R + S S + Sbjct: 94 HAVINEAVEIAKTRGKPHIAKVVNGVLRNVLRTGKPDFSAIPSTV 138 >gi|313886911|ref|ZP_07820614.1| transcription antitermination factor NusB [Porphyromonas asaccharolytica PR426713P-I] gi|312923608|gb|EFR34414.1| transcription antitermination factor NusB [Porphyromonas asaccharolytica PR426713P-I] Length = 347 Score = 37.4 bits (85), Expect = 0.77, Method: Compositional matrix adjust. Identities = 19/74 (25%), Positives = 39/74 (52%), Gaps = 1/74 (1%) Query: 80 KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139 ++ D +++ L + W R+ ++ ++ V E + C + + V I+EY+ +A + Sbjct: 263 REEYDAMLTPRL-DNWEQDRVALVDMILMEMAVAEALNCPDIALVVTINEYIELAKVYDN 321 Query: 140 GDEPKFINAVLDKV 153 FINAVLD++ Sbjct: 322 SKSASFINAVLDRL 335 >gi|21219974|ref|NP_625753.1| putative Sun-family protein [Streptomyces coelicolor A3(2)] gi|289772815|ref|ZP_06532193.1| RNA-binding Sun protein [Streptomyces lividans TK24] gi|7209232|emb|CAB76894.1| conserved hypothetical Sun-family protein SCL6.29c [Streptomyces coelicolor A3(2)] gi|289703014|gb|EFD70443.1| RNA-binding Sun protein [Streptomyces lividans TK24] Length = 475 Score = 37.4 bits (85), Expect = 0.77, Method: Compositional matrix adjust. Identities = 23/86 (26%), Positives = 42/86 (48%), Gaps = 3/86 (3%) Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131 +++G + R+ D +I+ C+ +D + +L GV +L+ +P +S V Sbjct: 72 LVYGTLRRQGTYDAIIADCVDR--PLREVDPPVLDVLSLGVHQLLGTR-IPSHAAVSASV 128 Query: 132 CIAHDFFYGDEPKFINAVLDKVSRKE 157 +A KF+NAVL KV+R + Sbjct: 129 ELARVVLGDGRAKFVNAVLRKVARDD 154 >gi|57242527|ref|ZP_00370465.1| transcription antitermination factor NusB [Campylobacter upsaliensis RM3195] gi|57016812|gb|EAL53595.1| transcription antitermination factor NusB [Campylobacter upsaliensis RM3195] Length = 132 Score = 37.4 bits (85), Expect = 0.79, Method: Compositional matrix adjust. Identities = 36/143 (25%), Positives = 64/143 (44%), Gaps = 20/143 (13%) Query: 16 RGIARLAAVQALYQIDIIGCS---TTEIISEYETYRFCADTELDVESVYLHVDLEWFRVI 72 R AR + + LY +++ G + TE + E + + L S+Y Sbjct: 4 RHQARQSVISLLYALELNGKNDNFITEFLQEKKIRNEAKNFTL---SLY----------- 49 Query: 73 IHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVC 132 +GV++ Q +D I L E ++ I +ILR G EL+ ++ ++I+E V Sbjct: 50 -NGVLEHLQSLDECIDVFLNEN-KIHQIGHIERAILRLGAFELLHTDTLAA-IVINEAVE 106 Query: 133 IAHDFFYGDEPKFINAVLDKVSR 155 + + + PK IN VLD + + Sbjct: 107 LTKEMANENAPKLINGVLDGLQK 129 >gi|237747092|ref|ZP_04577572.1| transcription termination [Oxalobacter formigenes HOxBLS] gi|229378443|gb|EEO28534.1| transcription termination [Oxalobacter formigenes HOxBLS] Length = 159 Score = 37.4 bits (85), Expect = 0.80, Method: Compositional matrix adjust. Identities = 22/61 (36%), Positives = 31/61 (50%) Query: 96 SFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSR 155 S L + +IL G EL +P V+I+E V + F D KF+N VLDK++ Sbjct: 87 SLDELSPVEHAILLLGAYELKNHIEIPYRVVINEAVELTKSFGGIDGHKFVNGVLDKIAA 146 Query: 156 K 156 K Sbjct: 147 K 147 >gi|256788927|ref|ZP_05527358.1| putative Sun-family protein [Streptomyces lividans TK24] Length = 451 Score = 37.0 bits (84), Expect = 0.81, Method: Compositional matrix adjust. Identities = 23/86 (26%), Positives = 42/86 (48%), Gaps = 3/86 (3%) Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131 +++G + R+ D +I+ C+ +D + +L GV +L+ +P +S V Sbjct: 48 LVYGTLRRQGTYDAIIADCVDRP--LREVDPPVLDVLSLGVHQLLGTR-IPSHAAVSASV 104 Query: 132 CIAHDFFYGDEPKFINAVLDKVSRKE 157 +A KF+NAVL KV+R + Sbjct: 105 ELARVVLGDGRAKFVNAVLRKVARDD 130 >gi|224026161|ref|ZP_03644527.1| hypothetical protein BACCOPRO_02917 [Bacteroides coprophilus DSM 18228] gi|224019397|gb|EEF77395.1| hypothetical protein BACCOPRO_02917 [Bacteroides coprophilus DSM 18228] Length = 308 Score = 37.0 bits (84), Expect = 0.82, Method: Compositional matrix adjust. Identities = 20/68 (29%), Positives = 37/68 (54%), Gaps = 1/68 (1%) Query: 86 LISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKF 145 LIS ++ W +R+ ++ I++ + E++ ++PV V ++EYV IA + F Sbjct: 229 LISEG-SKNWDLNRVAVMDVVIMQIALAEILSFPNIPVNVSLNEYVEIAKLYSTPKSGGF 287 Query: 146 INAVLDKV 153 IN LD + Sbjct: 288 INGTLDGI 295 >gi|53712491|ref|YP_098483.1| putative nitrogen utilization substance protein [Bacteroides fragilis YCH46] gi|52215356|dbj|BAD47949.1| putative nitrogen utilization substance protein [Bacteroides fragilis YCH46] Length = 258 Score = 37.0 bits (84), Expect = 0.83, Method: Compositional matrix adjust. Identities = 20/75 (26%), Positives = 39/75 (52%), Gaps = 2/75 (2%) Query: 92 TEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLD 151 T+ W R+ + I++ + E++ ++PV V ++EYV IA + FIN LD Sbjct: 184 TKNWDLDRVAFMDVIIMQCALAEILSFPNIPVSVSLNEYVEIAKLYSTVKSGSFINGTLD 243 Query: 152 KVSRKEEIKRSGCVS 166 + ++K+ G ++ Sbjct: 244 GIVN--QLKKEGKLT 256 >gi|60680691|ref|YP_210835.1| putative N utilization substance protein [Bacteroides fragilis NCTC 9343] gi|60492125|emb|CAH06888.1| putative N utilization substance protein [Bacteroides fragilis NCTC 9343] gi|301162218|emb|CBW21763.1| putative N utilization substance protein [Bacteroides fragilis 638R] Length = 294 Score = 37.0 bits (84), Expect = 0.84, Method: Compositional matrix adjust. Identities = 20/75 (26%), Positives = 39/75 (52%), Gaps = 2/75 (2%) Query: 92 TEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLD 151 T+ W R+ + I++ + E++ ++PV V ++EYV IA + FIN LD Sbjct: 220 TKNWDLDRVAFMDVIIMQCALAEILSFPNIPVSVSLNEYVEIAKLYSTVKSGSFINGTLD 279 Query: 152 KVSRKEEIKRSGCVS 166 + ++K+ G ++ Sbjct: 280 GIVN--QLKKEGKLT 292 >gi|323141164|ref|ZP_08076065.1| ribosomal RNA small subunit methyltransferase B [Phascolarctobacterium sp. YIT 12067] gi|322414307|gb|EFY05125.1| ribosomal RNA small subunit methyltransferase B [Phascolarctobacterium sp. YIT 12067] Length = 453 Score = 37.0 bits (84), Expect = 0.84, Method: Compositional matrix adjust. Identities = 19/87 (21%), Positives = 42/87 (48%), Gaps = 2/87 (2%) Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131 +++G + +D ++ C++ ++ + +ILR +L+ +P ++E V Sbjct: 55 LVYGTVKASGTLDWYLAQCVSR--PLDKVAGDILAILRISTYQLLYMTRIPASAAVNEAV 112 Query: 132 CIAHDFFYGDEPKFINAVLDKVSRKEE 158 +A + KF+N VL + RK+E Sbjct: 113 KLARSVSHEGSAKFVNGVLRGLLRKQE 139 >gi|302343804|ref|YP_003808333.1| NusB antitermination factor [Desulfarculus baarsii DSM 2075] gi|301640417|gb|ADK85739.1| NusB antitermination factor [Desulfarculus baarsii DSM 2075] Length = 142 Score = 37.0 bits (84), Expect = 0.84, Method: Compositional matrix adjust. Identities = 34/139 (24%), Positives = 62/139 (44%), Gaps = 13/139 (9%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 R ++R A++ LYQ++ G E F A +L + R ++ G Sbjct: 4 RSLSRELALKVLYQMEH-GDQDAEAALTVFAENFAAPEKL----------FAYTRQLVLG 52 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLEL-IECHSVPVEVIISEYVCIA 134 V ++ ID +++ ++ KW R+ + +ILR E+ + VP + ISE + ++ Sbjct: 53 VEQNRRRIDEMLNR-VSRKWRVERMSWVDRNILRLACYEIYLAPQPVPPKAAISEALDLS 111 Query: 135 HDFFYGDEPKFINAVLDKV 153 + FIN VLD + Sbjct: 112 KRYAEDCSCSFINGVLDSL 130 >gi|33862283|ref|NP_893843.1| transcription antitermination protein NusB [Prochlorococcus marinus str. MIT 9313] gi|33640396|emb|CAE20185.1| Antitermination protein NusB [Prochlorococcus marinus str. MIT 9313] Length = 222 Score = 37.0 bits (84), Expect = 0.84, Method: Compositional matrix adjust. Identities = 28/88 (31%), Positives = 44/88 (50%), Gaps = 6/88 (6%) Query: 66 LEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEV 125 LE R++I +++ ID I + + E W SRL I ILR V++L + P V Sbjct: 132 LERVRLVI----EQRNSIDASIDAVM-EGWRLSRLPRIDRDILRLAVVDLTALQT-PFAV 185 Query: 126 IISEYVCIAHDFFYGDEPKFINAVLDKV 153 +E V +AH + + IN VL ++ Sbjct: 186 ACNEAVELAHRYSDDQGRRMINGVLRRL 213 >gi|330836447|ref|YP_004411088.1| NusB antitermination factor [Spirochaeta coccoides DSM 17374] gi|329748350|gb|AEC01706.1| NusB antitermination factor [Spirochaeta coccoides DSM 17374] Length = 138 Score = 37.0 bits (84), Expect = 0.86, Method: Compositional matrix adjust. Identities = 25/86 (29%), Positives = 44/86 (51%), Gaps = 1/86 (1%) Query: 68 WFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVII 127 + R ++ G ++ ID +I+ + + +F R+D+I +ILR V L VII Sbjct: 23 FARYLVAGTLENIDGIDDVIA-AYSVRRAFDRIDVIDRNILRISVFSLFFSEDTHPHVII 81 Query: 128 SEYVCIAHDFFYGDEPKFINAVLDKV 153 E V ++ +F +FIN +LD + Sbjct: 82 DEAVKLSQEFSSEVNYRFINGLLDAL 107 >gi|255534372|ref|YP_003094743.1| Transcription termination protein NusB [Flavobacteriaceae bacterium 3519-10] gi|255340568|gb|ACU06681.1| Transcription termination protein NusB [Flavobacteriaceae bacterium 3519-10] Length = 301 Score = 37.0 bits (84), Expect = 0.88, Method: Compositional matrix adjust. Identities = 20/63 (31%), Positives = 31/63 (49%) Query: 93 EKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDK 152 E W R+ ++ IL + EL P V+I+EY+ I+ F FIN +LDK Sbjct: 234 ENWDIERVSLVDKIILVTAITELDYFPLTPARVVINEYIEISKVFSTDRSNIFINGILDK 293 Query: 153 VSR 155 ++ Sbjct: 294 YTK 296 >gi|315303726|ref|ZP_07874237.1| ribosomal RNA small subunit methyltransferase B [Listeria ivanovii FSL F6-596] gi|313627903|gb|EFR96525.1| ribosomal RNA small subunit methyltransferase B [Listeria ivanovii FSL F6-596] Length = 446 Score = 37.0 bits (84), Expect = 0.89, Method: Compositional matrix adjust. Identities = 25/85 (29%), Positives = 41/85 (48%), Gaps = 5/85 (5%) Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131 +++G RK +D ++ L ++ D + ++LR V +L VP I++E Sbjct: 49 LVYGTTQRKITLDYYLAPFLNKEP-----DNWVKNLLRMSVYQLTFLDKVPEHAILNEAG 103 Query: 132 CIAHDFFYGDEPKFINAVLDKVSRK 156 IA D + KF+N VL V RK Sbjct: 104 DIAKDLGHQGVTKFVNGVLRNVIRK 128 >gi|282850207|ref|ZP_06259586.1| transcription antitermination factor NusB [Veillonella parvula ATCC 17745] gi|282579700|gb|EFB85104.1| transcription antitermination factor NusB [Veillonella parvula ATCC 17745] Length = 134 Score = 37.0 bits (84), Expect = 0.89, Method: Compositional matrix adjust. Identities = 28/106 (26%), Positives = 51/106 (48%), Gaps = 4/106 (3%) Query: 52 DTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISS-CLTEKWSFSRLDMILCSILRA 110 D + +++ +D + II GV+ + ID + C + K + LD + SILR Sbjct: 29 DVQFPEGNIHKAMDKAYANSIIEGVLSNVEAIDATLQPFCKSRK--VANLDKVDRSILRI 86 Query: 111 GVLELI-ECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSR 155 V E+ + + + I+E + +A +F K INA+LD ++ Sbjct: 87 AVWEMTNKVEPLEPSIAINEAIQLAKEFGSDASYKLINAILDAYNK 132 >gi|326203177|ref|ZP_08193043.1| sun protein [Clostridium papyrosolvens DSM 2782] gi|325986823|gb|EGD47653.1| sun protein [Clostridium papyrosolvens DSM 2782] Length = 467 Score = 37.0 bits (84), Expect = 0.91, Method: Compositional matrix adjust. Identities = 32/140 (22%), Positives = 63/140 (45%), Gaps = 15/140 (10%) Query: 18 IARLAAVQALYQIDIIGCSTTEIISEYETY-RFCADTELDVESVYLHVDLEWFRVIIHGV 76 +AR A++ LY I +E + Y + LD + + +D + +++G Sbjct: 23 LARETALKILYDI-----------TENQAYSNISVNRHLDNDKLR-EIDRSFATELVYGT 70 Query: 77 MDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHD 136 + ID +I + K +L + ++LR GV +L+ +PV + V +A Sbjct: 71 VKWLLQIDYIIGKYSSVK--LKKLSPWIKNVLRLGVYQLLHTDRIPVSAACNTAVELAKR 128 Query: 137 FFYGDEPKFINAVLDKVSRK 156 + + +F+NAVL +S+ Sbjct: 129 YGHQASSRFVNAVLRNISKN 148 >gi|313618293|gb|EFR90347.1| ribosomal RNA small subunit methyltransferase B [Listeria innocua FSL S4-378] Length = 446 Score = 37.0 bits (84), Expect = 0.92, Method: Compositional matrix adjust. Identities = 25/85 (29%), Positives = 41/85 (48%), Gaps = 5/85 (5%) Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131 +++G RK +D ++ L ++ D + ++LR V +L VP I++E Sbjct: 49 LVYGTTQRKITLDYYLAPFLNKEP-----DNWVKNLLRMSVYQLTFLDKVPEHAILNEAG 103 Query: 132 CIAHDFFYGDEPKFINAVLDKVSRK 156 IA D + KF+N VL V RK Sbjct: 104 DIAKDLGHQGVTKFVNGVLRNVIRK 128 >gi|328466174|gb|EGF37331.1| 16S rRNA methyltransferase B [Listeria monocytogenes 1816] Length = 399 Score = 37.0 bits (84), Expect = 0.92, Method: Compositional matrix adjust. Identities = 25/85 (29%), Positives = 41/85 (48%), Gaps = 5/85 (5%) Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131 +++G RK +D ++ L ++ D + ++LR V +L VP I++E Sbjct: 4 LVYGTTQRKITLDYYLAPFLNKEP-----DNWVKNLLRMSVYQLTFLDKVPEHAILNEAG 58 Query: 132 CIAHDFFYGDEPKFINAVLDKVSRK 156 IA D + KF+N VL V RK Sbjct: 59 DIAKDLGHQGVTKFVNGVLRNVIRK 83 >gi|116873257|ref|YP_850038.1| sun protein [Listeria welshimeri serovar 6b str. SLCC5334] gi|116742135|emb|CAK21259.1| sun protein [Listeria welshimeri serovar 6b str. SLCC5334] Length = 444 Score = 37.0 bits (84), Expect = 0.93, Method: Compositional matrix adjust. Identities = 25/85 (29%), Positives = 41/85 (48%), Gaps = 5/85 (5%) Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131 +++G RK +D ++ L ++ D + ++LR V +L VP I++E Sbjct: 49 LVYGTTQRKITLDYYLAPFLNKEP-----DNWVKNLLRMSVYQLTFLDKVPEHAILNEAG 103 Query: 132 CIAHDFFYGDEPKFINAVLDKVSRK 156 IA D + KF+N VL V RK Sbjct: 104 DIAKDLGHQGVTKFVNGVLRNVIRK 128 >gi|329961415|ref|ZP_08299538.1| transcription antitermination factor NusB [Bacteroides fluxus YIT 12057] gi|328531892|gb|EGF58715.1| transcription antitermination factor NusB [Bacteroides fluxus YIT 12057] Length = 308 Score = 37.0 bits (84), Expect = 0.94, Method: Compositional matrix adjust. Identities = 19/75 (25%), Positives = 38/75 (50%), Gaps = 2/75 (2%) Query: 92 TEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLD 151 T W R+ + I++ + E++ ++PV V ++EYV IA + F+N LD Sbjct: 234 TRNWDLDRVAFMDVVIMQCALAEILSFPNIPVSVSLNEYVDIAKVYSTVKSGSFVNGTLD 293 Query: 152 KVSRKEEIKRSGCVS 166 + ++K+ G ++ Sbjct: 294 GIVN--QLKKEGKLT 306 >gi|226224425|ref|YP_002758532.1| RNA-binding Sun protein [Listeria monocytogenes Clip81459] gi|225876887|emb|CAS05596.1| Putative RNA-binding Sun protein [Listeria monocytogenes serotype 4b str. CLIP 80459] Length = 444 Score = 37.0 bits (84), Expect = 0.94, Method: Compositional matrix adjust. Identities = 25/85 (29%), Positives = 41/85 (48%), Gaps = 5/85 (5%) Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131 +++G RK +D ++ L ++ D + ++LR V +L VP I++E Sbjct: 49 LVYGTTQRKITLDYYLAPFLNKEP-----DNWVKNLLRMSVYQLTFLDKVPEHAILNEAG 103 Query: 132 CIAHDFFYGDEPKFINAVLDKVSRK 156 IA D + KF+N VL V RK Sbjct: 104 DIAKDLGHQGVTKFVNGVLRNVIRK 128 >gi|217964025|ref|YP_002349703.1| ribosomal RNA small subunit methyltransferase B [Listeria monocytogenes HCC23] gi|217333295|gb|ACK39089.1| ribosomal RNA small subunit methyltransferase B [Listeria monocytogenes HCC23] gi|307571404|emb|CAR84583.1| tRNA and rRNA cytosine-C5-methylase, putative [Listeria monocytogenes L99] Length = 444 Score = 37.0 bits (84), Expect = 0.95, Method: Compositional matrix adjust. Identities = 25/85 (29%), Positives = 41/85 (48%), Gaps = 5/85 (5%) Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131 +++G RK +D ++ L ++ D + ++LR V +L VP I++E Sbjct: 49 LVYGTTQRKITLDYYLAPFLNKEP-----DNWVKNLLRMSVYQLTFLDKVPEHAILNEAG 103 Query: 132 CIAHDFFYGDEPKFINAVLDKVSRK 156 IA D + KF+N VL V RK Sbjct: 104 DIAKDLGHQGVTKFVNGVLRNVIRK 128 >gi|16801002|ref|NP_471270.1| hypothetical protein lin1936 [Listeria innocua Clip11262] gi|16414437|emb|CAC97166.1| lin1936 [Listeria innocua Clip11262] Length = 446 Score = 37.0 bits (84), Expect = 0.95, Method: Compositional matrix adjust. Identities = 25/85 (29%), Positives = 41/85 (48%), Gaps = 5/85 (5%) Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131 +++G RK +D ++ L ++ D + ++LR V +L VP I++E Sbjct: 49 LVYGTTQRKITLDYYLAPFLNKEP-----DNWVKNLLRMSVYQLTFLDKVPEHAILNEAG 103 Query: 132 CIAHDFFYGDEPKFINAVLDKVSRK 156 IA D + KF+N VL V RK Sbjct: 104 DIAKDLGHQGVTKFVNGVLRNVIRK 128 >gi|300781095|ref|ZP_07090949.1| possible transcription antitermination protein NusB [Corynebacterium genitalium ATCC 33030] gi|300532802|gb|EFK53863.1| possible transcription antitermination protein NusB [Corynebacterium genitalium ATCC 33030] Length = 217 Score = 37.0 bits (84), Expect = 0.96, Method: Compositional matrix adjust. Identities = 21/87 (24%), Positives = 42/87 (48%) Query: 67 EWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVI 126 ++ R II G ID I L++ W +R+ + +ILR E++ V + Sbjct: 54 DYTREIIAGAAAALDEIDNAIERFLSDNWELNRIPAVDRAILRVATWEILYNDEVEPPIS 113 Query: 127 ISEYVCIAHDFFYGDEPKFINAVLDKV 153 I+ + ++ ++ + +I+AVLD + Sbjct: 114 IANAMEMSTEYAGDNASPYIHAVLDDI 140 >gi|313905220|ref|ZP_07838588.1| sun protein [Eubacterium cellulosolvens 6] gi|313469973|gb|EFR65307.1| sun protein [Eubacterium cellulosolvens 6] Length = 437 Score = 37.0 bits (84), Expect = 0.97, Method: Compositional matrix adjust. Identities = 24/94 (25%), Positives = 46/94 (48%), Gaps = 2/94 (2%) Query: 65 DLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVE 124 D ++ + G ++ + +D +I+S K +R+ ++ ILR V +L SVP Sbjct: 43 DRAFYVRLTEGTLEYRLQLDYIINSY--SKTRTTRMKPMIREILRVAVYQLRYMDSVPDS 100 Query: 125 VIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEE 158 ++E V +A + F+N VL ++R+ E Sbjct: 101 AAVNEAVRLAVRRGFSGLKGFVNGVLRSIAREPE 134 >gi|46908054|ref|YP_014443.1| sun protein [Listeria monocytogenes serotype 4b str. F2365] gi|47093059|ref|ZP_00230837.1| sun protein [Listeria monocytogenes str. 4b H7858] gi|254826136|ref|ZP_05231137.1| sun protein [Listeria monocytogenes FSL J1-194] gi|254852729|ref|ZP_05242077.1| sun protein [Listeria monocytogenes FSL R2-503] gi|254933294|ref|ZP_05266653.1| sun protein [Listeria monocytogenes HPB2262] gi|300763865|ref|ZP_07073862.1| sun protein [Listeria monocytogenes FSL N1-017] gi|46881324|gb|AAT04620.1| sun protein [Listeria monocytogenes serotype 4b str. F2365] gi|47018560|gb|EAL09315.1| sun protein [Listeria monocytogenes str. 4b H7858] gi|258606052|gb|EEW18660.1| sun protein [Listeria monocytogenes FSL R2-503] gi|293584854|gb|EFF96886.1| sun protein [Listeria monocytogenes HPB2262] gi|293595376|gb|EFG03137.1| sun protein [Listeria monocytogenes FSL J1-194] gi|300515601|gb|EFK42651.1| sun protein [Listeria monocytogenes FSL N1-017] gi|332312263|gb|EGJ25358.1| Ribosomal RNA small subunit methyltransferase B [Listeria monocytogenes str. Scott A] Length = 444 Score = 37.0 bits (84), Expect = 0.98, Method: Compositional matrix adjust. Identities = 25/85 (29%), Positives = 41/85 (48%), Gaps = 5/85 (5%) Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131 +++G RK +D ++ L ++ D + ++LR V +L VP I++E Sbjct: 49 LVYGTTQRKITLDYYLAPFLNKEP-----DNWVKNLLRMSVYQLTFLDKVPEHAILNEAG 103 Query: 132 CIAHDFFYGDEPKFINAVLDKVSRK 156 IA D + KF+N VL V RK Sbjct: 104 DIAKDLGHQGVTKFVNGVLRNVIRK 128 >gi|315282824|ref|ZP_07871146.1| ribosomal RNA small subunit methyltransferase B [Listeria marthii FSL S4-120] gi|313613532|gb|EFR87354.1| ribosomal RNA small subunit methyltransferase B [Listeria marthii FSL S4-120] Length = 400 Score = 37.0 bits (84), Expect = 0.99, Method: Compositional matrix adjust. Identities = 25/85 (29%), Positives = 41/85 (48%), Gaps = 5/85 (5%) Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131 +++G RK +D ++ L ++ D + ++LR V +L VP I++E Sbjct: 5 LVYGTTQRKITLDYYLAPFLNKEP-----DNWVKNLLRMSVYQLTFLDKVPEHAILNEAG 59 Query: 132 CIAHDFFYGDEPKFINAVLDKVSRK 156 IA D + KF+N VL V RK Sbjct: 60 DIAKDLGHQGVTKFVNGVLRNVIRK 84 >gi|290893049|ref|ZP_06556038.1| sun protein [Listeria monocytogenes FSL J2-071] gi|290557409|gb|EFD90934.1| sun protein [Listeria monocytogenes FSL J2-071] gi|313608142|gb|EFR84195.1| ribosomal RNA small subunit methyltransferase B [Listeria monocytogenes FSL F2-208] Length = 444 Score = 37.0 bits (84), Expect = 0.99, Method: Compositional matrix adjust. Identities = 25/85 (29%), Positives = 41/85 (48%), Gaps = 5/85 (5%) Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131 +++G RK +D ++ L ++ D + ++LR V +L VP I++E Sbjct: 49 LVYGTTQRKITLDYYLAPFLNKEP-----DNWVKNLLRMSVYQLTFLDKVPEHAILNEAG 103 Query: 132 CIAHDFFYGDEPKFINAVLDKVSRK 156 IA D + KF+N VL V RK Sbjct: 104 DIAKDLGHQGVTKFVNGVLRNVIRK 128 >gi|257066525|ref|YP_003152781.1| NusB antitermination factor [Anaerococcus prevotii DSM 20548] gi|256798405|gb|ACV29060.1| NusB antitermination factor [Anaerococcus prevotii DSM 20548] Length = 127 Score = 37.0 bits (84), Expect = 1.00, Method: Compositional matrix adjust. Identities = 28/94 (29%), Positives = 47/94 (50%), Gaps = 3/94 (3%) Query: 64 VDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPV 123 D ++ R I ++ ID ++S L K RL +L SIL + E+ +PV Sbjct: 35 TDEDFVRKSISSFLNNFSSIDEKLTSNLDSKRK--RLSKVLRSILYLSINEMY-FMDIPV 91 Query: 124 EVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKE 157 V I+E V +A + D+ K +N++L + RK+ Sbjct: 92 SVSINEAVNLAKKYSDEDDYKLVNSILGSIVRKD 125 >gi|313637331|gb|EFS02816.1| ribosomal RNA small subunit methyltransferase B [Listeria seeligeri FSL S4-171] Length = 446 Score = 37.0 bits (84), Expect = 1.0, Method: Compositional matrix adjust. Identities = 25/85 (29%), Positives = 41/85 (48%), Gaps = 5/85 (5%) Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131 +++G RK +D ++ L ++ D + ++LR V +L VP I++E Sbjct: 49 LVYGTTQRKITLDYYLAPFLNKEP-----DNWVKNLLRMSVYQLTFLDKVPEHAILNEAG 103 Query: 132 CIAHDFFYGDEPKFINAVLDKVSRK 156 IA D + KF+N VL V RK Sbjct: 104 DIAKDLGHQGVTKFVNGVLRNVIRK 128 >gi|313665137|ref|YP_004047008.1| ribosomal RNA small subunit methyltransferase B [Mycoplasma leachii PG50] gi|312949207|gb|ADR23803.1| ribosomal RNA small subunit methyltransferase B [Mycoplasma leachii PG50] Length = 423 Score = 37.0 bits (84), Expect = 1.0, Method: Compositional matrix adjust. Identities = 25/91 (27%), Positives = 47/91 (51%), Gaps = 5/91 (5%) Query: 65 DLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVE 124 D ++ ++HGV+ K H+D L++ + K + L +IL + ++I +S+P Sbjct: 37 DKDFVFNLVHGVISNKIHLDYLLAKLIDVKKTSIDLQIILL----ISLYQMIYLNSIPNY 92 Query: 125 VIISEYVCIAHDFFYGDEPKFINAVLDKVSR 155 I++E V + + FINA+L+K R Sbjct: 93 AIVNESVNLIKT-TSQKQANFINAILNKFLR 122 >gi|289435165|ref|YP_003465037.1| sun protein [Listeria seeligeri serovar 1/2b str. SLCC3954] gi|289171409|emb|CBH27953.1| sun protein [Listeria seeligeri serovar 1/2b str. SLCC3954] Length = 446 Score = 37.0 bits (84), Expect = 1.0, Method: Compositional matrix adjust. Identities = 25/85 (29%), Positives = 41/85 (48%), Gaps = 5/85 (5%) Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131 +++G RK +D ++ L ++ D + ++LR V +L VP I++E Sbjct: 49 LVYGTTQRKITLDYYLAPFLNKEP-----DNWVKNLLRMSVYQLTFLDKVPEHAILNEAG 103 Query: 132 CIAHDFFYGDEPKFINAVLDKVSRK 156 IA D + KF+N VL V RK Sbjct: 104 DIAKDLGHQGVTKFVNGVLRNVIRK 128 >gi|168019738|ref|XP_001762401.1| predicted protein [Physcomitrella patens subsp. patens] gi|162686479|gb|EDQ72868.1| predicted protein [Physcomitrella patens subsp. patens] Length = 465 Score = 37.0 bits (84), Expect = 1.0, Method: Compositional matrix adjust. Identities = 23/87 (26%), Positives = 45/87 (51%), Gaps = 2/87 (2%) Query: 73 IHGVMDRKQHIDLLISSCLTEK-WSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131 + G++ K+++D LI S + + R++ +L ILR G+ ELI+ +P +++E V Sbjct: 51 VAGIVRWKRYLDFLIFSFFKQDVRDYDRMEPLLRQILRVGLYELIKLE-MPPHAVLNETV 109 Query: 132 CIAHDFFYGDEPKFINAVLDKVSRKEE 158 +A +N +L V R ++ Sbjct: 110 QLAKVALRAGAGNLVNGLLRDVVRHQD 136 >gi|86605070|ref|YP_473833.1| transcription antitermination protein NusB [Synechococcus sp. JA-3-3Ab] gi|119390839|sp|Q2JQT6|NUSB_SYNJA RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|86553612|gb|ABC98570.1| transcription antitermination factor NusB [Synechococcus sp. JA-3-3Ab] Length = 288 Score = 37.0 bits (84), Expect = 1.0, Method: Compositional matrix adjust. Identities = 23/74 (31%), Positives = 36/74 (48%), Gaps = 1/74 (1%) Query: 80 KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139 K+ ID + L W R+ I ILR V+E+ S P +V I+E V +A + Sbjct: 195 KEAIDARLQGVLV-GWQLKRVGRIERDILRLAVVEMEILRSSPDKVAINEAVELAKKYGD 253 Query: 140 GDEPKFINAVLDKV 153 + F+N VL ++ Sbjct: 254 PEAAAFVNGVLRRL 267 >gi|332300781|ref|YP_004442702.1| NusB antitermination factor [Porphyromonas asaccharolytica DSM 20707] gi|332177844|gb|AEE13534.1| NusB antitermination factor [Porphyromonas asaccharolytica DSM 20707] Length = 347 Score = 37.0 bits (84), Expect = 1.0, Method: Compositional matrix adjust. Identities = 19/74 (25%), Positives = 39/74 (52%), Gaps = 1/74 (1%) Query: 80 KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139 ++ D +++ L + W R+ ++ ++ V E + C + + V I+EY+ +A + Sbjct: 263 REDYDAMLTPRL-DNWEQDRVALVDMILMEMAVAEALNCPDIALVVTINEYIELAKVYDN 321 Query: 140 GDEPKFINAVLDKV 153 FINAVLD++ Sbjct: 322 SKSASFINAVLDRL 335 >gi|313623277|gb|EFR93521.1| ribosomal RNA small subunit methyltransferase B [Listeria innocua FSL J1-023] Length = 446 Score = 37.0 bits (84), Expect = 1.0, Method: Compositional matrix adjust. Identities = 25/85 (29%), Positives = 41/85 (48%), Gaps = 5/85 (5%) Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131 +++G RK +D ++ L ++ D + ++LR V +L VP I++E Sbjct: 49 LVYGTTQRKITLDYYLAPFLNKEP-----DNWVKNLLRMSVYQLTFLDKVPEHAILNEAG 103 Query: 132 CIAHDFFYGDEPKFINAVLDKVSRK 156 IA D + KF+N VL V RK Sbjct: 104 DIAKDLGHQGVTKFVNGVLRNVIRK 128 >gi|255522012|ref|ZP_05389249.1| sun protein [Listeria monocytogenes FSL J1-175] Length = 444 Score = 37.0 bits (84), Expect = 1.0, Method: Compositional matrix adjust. Identities = 25/85 (29%), Positives = 41/85 (48%), Gaps = 5/85 (5%) Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131 +++G RK +D ++ L ++ D + ++LR V +L VP I++E Sbjct: 49 LVYGTTQRKITLDYYLAPFLNKEP-----DNWVKNLLRMSVYQLTFLDKVPEHAILNEAG 103 Query: 132 CIAHDFFYGDEPKFINAVLDKVSRK 156 IA D + KF+N VL V RK Sbjct: 104 DIAKDLGHQGVTKFVNGVLRNVIRK 128 >gi|253702184|ref|YP_003023373.1| sun protein [Geobacter sp. M21] gi|251777034|gb|ACT19615.1| sun protein [Geobacter sp. M21] Length = 448 Score = 36.6 bits (83), Expect = 1.1, Method: Compositional matrix adjust. Identities = 25/90 (27%), Positives = 45/90 (50%), Gaps = 9/90 (10%) Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131 +++GV+ R+ +D +IS K +L++ + +LR G+ + VPV ++E V Sbjct: 48 LVYGVLRRQGTLDYIISQF--SKQRPEKLELFVRLLLRLGIYQCFFLDRVPVSAAVNETV 105 Query: 132 CIAHDFFYGDEPK---FINAVLDKVSRKEE 158 +A + P+ FINAVL R + Sbjct: 106 NLAKEL----APRASGFINAVLRNADRGRD 131 >gi|147678123|ref|YP_001212338.1| tRNA and rRNA cytosine-C5-methylases [Pelotomaculum thermopropionicum SI] gi|146274220|dbj|BAF59969.1| tRNA and rRNA cytosine-C5-methylases [Pelotomaculum thermopropionicum SI] Length = 456 Score = 36.6 bits (83), Expect = 1.1, Method: Compositional matrix adjust. Identities = 19/63 (30%), Positives = 31/63 (49%) Query: 94 KWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKV 153 K S + +ILR GV +L+ VP + +E +A + + KF+N VL + Sbjct: 71 KQPLSSQSRTVLNILRLGVYQLMFMDRVPPSAVCNEGAELARKYGHAGTVKFVNGVLRNI 130 Query: 154 SRK 156 SR+ Sbjct: 131 SRR 133 >gi|197119890|ref|YP_002140317.1| 16S rRNA (5-methyl-C967)-methyltransferase [Geobacter bemidjiensis Bem] gi|197089250|gb|ACH40521.1| 16S rRNA (5-methyl-C967)-methyltransferase [Geobacter bemidjiensis Bem] Length = 448 Score = 36.6 bits (83), Expect = 1.1, Method: Compositional matrix adjust. Identities = 25/90 (27%), Positives = 45/90 (50%), Gaps = 9/90 (10%) Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131 +++GV+ R+ +D +IS K +L++ + +LR G+ + VPV ++E V Sbjct: 48 LVYGVLRRQGTLDYIISQF--SKQRPEKLELFVRLLLRLGIYQCFFLDRVPVSAAVNETV 105 Query: 132 CIAHDFFYGDEPK---FINAVLDKVSRKEE 158 +A + P+ FINAVL R + Sbjct: 106 NLAKEL----APRASGFINAVLRNADRGRD 131 >gi|331703221|ref|YP_004399908.1| Sun family protein [Mycoplasma mycoides subsp. capri LC str. 95010] gi|328801776|emb|CBW53929.1| Sun family protein [Mycoplasma mycoides subsp. capri LC str. 95010] Length = 423 Score = 36.6 bits (83), Expect = 1.1, Method: Compositional matrix adjust. Identities = 25/91 (27%), Positives = 47/91 (51%), Gaps = 5/91 (5%) Query: 65 DLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVE 124 D ++ ++HGV+ K H+D L++ + K + L +IL + ++I +S+P Sbjct: 37 DKDFVFNLVHGVISNKIHLDYLLAKLIDVKKTSIDLQIILL----ISLYQMIYLNSIPNY 92 Query: 125 VIISEYVCIAHDFFYGDEPKFINAVLDKVSR 155 I++E V + + FINA+L+K R Sbjct: 93 AIVNESVNLIKT-TSQKQANFINAILNKFLR 122 >gi|160915119|ref|ZP_02077332.1| hypothetical protein EUBDOL_01127 [Eubacterium dolichum DSM 3991] gi|158432918|gb|EDP11207.1| hypothetical protein EUBDOL_01127 [Eubacterium dolichum DSM 3991] Length = 126 Score = 36.6 bits (83), Expect = 1.1, Method: Compositional matrix adjust. Identities = 21/67 (31%), Positives = 34/67 (50%), Gaps = 1/67 (1%) Query: 87 ISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFI 146 I L + W+F RL + +IL EL + + P ++I E V +A + D + I Sbjct: 61 IDETLRDDWTFERLGYVEKAILLMAACEL-DFETAPKAIVIDEAVNLAKKYCDEDTYRLI 119 Query: 147 NAVLDKV 153 N VLD++ Sbjct: 120 NGVLDRL 126 >gi|167747003|ref|ZP_02419130.1| hypothetical protein ANACAC_01715 [Anaerostipes caccae DSM 14662] gi|317471818|ref|ZP_07931155.1| transcription antitermination factor NusB [Anaerostipes sp. 3_2_56FAA] gi|167653963|gb|EDR98092.1| hypothetical protein ANACAC_01715 [Anaerostipes caccae DSM 14662] gi|316900709|gb|EFV22686.1| transcription antitermination factor NusB [Anaerostipes sp. 3_2_56FAA] Length = 131 Score = 36.6 bits (83), Expect = 1.2, Method: Compositional matrix adjust. Identities = 25/110 (22%), Positives = 49/110 (44%), Gaps = 1/110 (0%) Query: 45 ETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMIL 104 E + AD + + + ++ + ++ R + ID I+ ++ W RL Sbjct: 23 EEFEAQADLYFSNNDFFRNKEKDYIKTRTLDMLSRLEEIDQKINEN-SKGWDIKRLGKAE 81 Query: 105 CSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVS 154 +ILR V E++ +P +V I+E V ++ + FIN +L K+ Sbjct: 82 LTILRIAVYEIMFDEDIPDKVAINEAVELSKTYCNEKAASFINGILGKIG 131 >gi|317498698|ref|ZP_07956990.1| ribosomal RNA small subunit methyltransferase B [Lachnospiraceae bacterium 5_1_63FAA] gi|316894040|gb|EFV16230.1| ribosomal RNA small subunit methyltransferase B [Lachnospiraceae bacterium 5_1_63FAA] Length = 447 Score = 36.6 bits (83), Expect = 1.2, Method: Compositional matrix adjust. Identities = 22/94 (23%), Positives = 45/94 (47%), Gaps = 2/94 (2%) Query: 65 DLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVE 124 D +F ++ G ++R+ ID + K + ++ ++LR G+ +++ VP Sbjct: 40 DRAFFTRLVEGTLERQITIDYVADQF--SKTKIRKCKPLIRALLRMGIYQILYMDQVPDS 97 Query: 125 VIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEE 158 +E V +A + F+N VL +SRK++ Sbjct: 98 AACNEAVKLAKKRGFSRLSGFVNGVLRNISRKKD 131 >gi|239939911|ref|ZP_04691848.1| putative RNA-binding Sun protein [Streptomyces roseosporus NRRL 15998] gi|239986397|ref|ZP_04707061.1| putative RNA-binding Sun protein [Streptomyces roseosporus NRRL 11379] gi|291443343|ref|ZP_06582733.1| RNA-binding Sun family protein [Streptomyces roseosporus NRRL 15998] gi|291346290|gb|EFE73194.1| RNA-binding Sun family protein [Streptomyces roseosporus NRRL 15998] Length = 477 Score = 36.6 bits (83), Expect = 1.2, Method: Compositional matrix adjust. Identities = 21/83 (25%), Positives = 41/83 (49%), Gaps = 3/83 (3%) Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131 +++G + R+ D ++++C+ +D + +L GV +L+ +P +S V Sbjct: 67 LVYGTLRRQGTYDAIVAACIDR--PLREVDPPVLDVLNMGVHQLLGTR-IPTHAAVSASV 123 Query: 132 CIAHDFFYGDEPKFINAVLDKVS 154 +A KF+NAVL KV+ Sbjct: 124 ELARVVLGEGRAKFVNAVLRKVT 146 >gi|167768546|ref|ZP_02440599.1| hypothetical protein CLOSS21_03105 [Clostridium sp. SS2/1] gi|167710070|gb|EDS20649.1| hypothetical protein CLOSS21_03105 [Clostridium sp. SS2/1] gi|291560508|emb|CBL39308.1| ribosomal RNA small subunit methyltransferase RsmB [butyrate-producing bacterium SSC/2] Length = 447 Score = 36.6 bits (83), Expect = 1.2, Method: Compositional matrix adjust. Identities = 22/94 (23%), Positives = 45/94 (47%), Gaps = 2/94 (2%) Query: 65 DLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVE 124 D +F ++ G ++R+ ID + K + ++ ++LR G+ +++ VP Sbjct: 40 DRAFFTRLVEGTLERQITIDYVADQF--SKTKIRKCKPLIRALLRMGIYQILYMDQVPDS 97 Query: 125 VIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEE 158 +E V +A + F+N VL +SRK++ Sbjct: 98 AACNEAVKLAKKRGFSRLSGFVNGVLRNISRKKD 131 >gi|309810728|ref|ZP_07704536.1| putative ribosomal RNA small subunit methyltransferase B [Dermacoccus sp. Ellin185] gi|308435359|gb|EFP59183.1| putative ribosomal RNA small subunit methyltransferase B [Dermacoccus sp. Ellin185] Length = 489 Score = 36.6 bits (83), Expect = 1.2, Method: Compositional matrix adjust. Identities = 22/83 (26%), Positives = 42/83 (50%), Gaps = 3/83 (3%) Query: 75 GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134 G + R+ D +I + + S++D ++ ++LR GV +++ VPV SE V +A Sbjct: 66 GTIRRQGFYDRVIETG--SGRAPSQIDPVVLAVLRLGVHQILSMR-VPVHAATSETVALA 122 Query: 135 HDFFYGDEPKFINAVLDKVSRKE 157 + F+NAVL + ++ Sbjct: 123 REHAGSGAAGFVNAVLRRAGERD 145 >gi|296133297|ref|YP_003640544.1| sun protein [Thermincola sp. JR] gi|296031875|gb|ADG82643.1| sun protein [Thermincola potens JR] Length = 451 Score = 36.6 bits (83), Expect = 1.2, Method: Compositional matrix adjust. Identities = 31/147 (21%), Positives = 63/147 (42%), Gaps = 22/147 (14%) Query: 19 ARLAAVQALYQIDIIGC----STTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74 AR A++ +YQ+D G + +++ +Y+ + D + +++ Sbjct: 4 ARKLALEVIYQVDREGAYSNIALNKVLEKYQPEK---------------KDRAFITELVY 48 Query: 75 GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134 G + R +D + ++ L + +I+R G+ ++ VP +E V +A Sbjct: 49 GTLKRLNTLDWIAGRFVSR--PLDSLTPWIRNIIRMGIYQIFFMDKVPNSAACNESVNLA 106 Query: 135 HDFFYGDEPKFINAVLDKVSR-KEEIK 160 F + KF+N VL V R K+ +K Sbjct: 107 RKFGHQGTVKFVNGVLRNVVRHKDRVK 133 >gi|42560767|ref|NP_975218.1| Sun family protein [Mycoplasma mycoides subsp. mycoides SC str. PG1] gi|42492263|emb|CAE76860.1| Sun family protein [Mycoplasma mycoides subsp. mycoides SC str. PG1] Length = 432 Score = 36.6 bits (83), Expect = 1.2, Method: Compositional matrix adjust. Identities = 24/84 (28%), Positives = 44/84 (52%), Gaps = 5/84 (5%) Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131 ++HGV+ K H+D L++ + K + L +IL + ++I +S+P I++E V Sbjct: 53 LVHGVISNKIHLDYLLTKLIDVKKTSIDLQIILL----ISLYQMIYLNSIPNYAIVNESV 108 Query: 132 CIAHDFFYGDEPKFINAVLDKVSR 155 + + FINA+L+K R Sbjct: 109 NLIKT-TSQKQANFINAILNKFLR 131 >gi|313664987|ref|YP_004046858.1| transcription antitermination factor NusB [Mycoplasma leachii PG50] gi|312949412|gb|ADR24008.1| transcription antitermination factor NusB [Mycoplasma leachii PG50] Length = 132 Score = 36.6 bits (83), Expect = 1.2, Method: Compositional matrix adjust. Identities = 26/81 (32%), Positives = 44/81 (54%), Gaps = 11/81 (13%) Query: 81 QHIDLL--ISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVC----IA 134 + +DL+ I+ ++ W + R+ ++ +IL G E++ + P V I+E V I Sbjct: 57 KQVDLINHININISLNWKWDRIPAVIRAILIVGTYEILYTDT-PKPVTINEMVNYVKEIE 115 Query: 135 HDFFYGDEPKFINAVLDKVSR 155 DF Y KF+NAVLDK+ + Sbjct: 116 PDFDY----KFVNAVLDKIIK 132 >gi|83319809|ref|YP_424196.1| rRNA methyltransferase RsmB (sun protein), putative [Mycoplasma capricolum subsp. capricolum ATCC 27343] gi|83283695|gb|ABC01627.1| rRNA methyltransferase RsmB (sun protein), putative [Mycoplasma capricolum subsp. capricolum ATCC 27343] Length = 428 Score = 36.6 bits (83), Expect = 1.2, Method: Compositional matrix adjust. Identities = 25/91 (27%), Positives = 47/91 (51%), Gaps = 5/91 (5%) Query: 65 DLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVE 124 D ++ ++HGV+ K H+D L++ + K + L +IL + ++I +S+P Sbjct: 46 DKDFVFNLVHGVISNKIHLDYLLAKLIDVKKTSIDLQVILL----ISLYQMIYLNSIPNY 101 Query: 125 VIISEYVCIAHDFFYGDEPKFINAVLDKVSR 155 I++E V + + FINA+L+K R Sbjct: 102 AIVNESVNLIKT-TSQKQANFINAILNKFLR 131 >gi|32490464|dbj|BAC79124.1| putative transcription termination protein [Streptomyces griseus] Length = 66 Score = 36.6 bits (83), Expect = 1.3, Method: Compositional matrix adjust. Identities = 18/41 (43%), Positives = 22/41 (53%) Query: 108 LRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINA 148 LR G ELI P V+I E V +A +F D P F+NA Sbjct: 19 LRLGAYELIWMDGTPDAVVIDEAVQLAKEFSTDDSPSFVNA 59 >gi|15605713|ref|NP_213090.1| transcription antitermination protein NusB [Aquifex aeolicus VF5] gi|7387972|sp|O66530|NUSB_AQUAE RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|168177029|pdb|2JR0|A Chain A, Solution Structure Of Nusb From Aquifex Aeolicus gi|2982871|gb|AAC06491.1| transcription termination NusB [Aquifex aeolicus VF5] Length = 148 Score = 36.6 bits (83), Expect = 1.3, Method: Compositional matrix adjust. Identities = 35/139 (25%), Positives = 60/139 (43%), Gaps = 12/139 (8%) Query: 12 LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71 + +R+G AR A LY+ D+ G + E+ E + + + Y E+ + Sbjct: 1 MRYRKG-ARDTAFLVLYRWDLRGENPGELFKE-----VVEEKNIKNKDAY-----EYAKK 49 Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131 ++ + + ID +I L + WS RL + + LR GV ELI S + + V Sbjct: 50 LVDTAVRHIEEIDSIIEKHL-KGWSIDRLGYVERNALRLGVAELIFLKSKEPGRVFIDIV 108 Query: 132 CIAHDFFYGDEPKFINAVL 150 + + KF+N VL Sbjct: 109 DLVKKYADEKAGKFVNGVL 127 >gi|320528399|ref|ZP_08029561.1| putative transcription antitermination factor NusB [Solobacterium moorei F0204] gi|320131313|gb|EFW23881.1| putative transcription antitermination factor NusB [Solobacterium moorei F0204] Length = 150 Score = 36.6 bits (83), Expect = 1.3, Method: Compositional matrix adjust. Identities = 23/65 (35%), Positives = 33/65 (50%), Gaps = 1/65 (1%) Query: 87 ISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFI 146 I S L + WS+ RL +I +IL G E + VII + V +A + D K + Sbjct: 85 IDSVLKKGWSYERLGLIEKAILLNGCAEF-DLKKTESAVIIDQSVQLAKRYCDSDTYKLV 143 Query: 147 NAVLD 151 N+VLD Sbjct: 144 NSVLD 148 >gi|26553613|ref|NP_757547.1| transcription termination factor N-utilization substance protein B [Mycoplasma penetrans HF-2] gi|26453619|dbj|BAC43951.1| transcription termination factor N-utilization substance protein B [Mycoplasma penetrans HF-2] Length = 149 Score = 36.6 bits (83), Expect = 1.3, Method: Compositional matrix adjust. Identities = 23/84 (27%), Positives = 42/84 (50%), Gaps = 5/84 (5%) Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVE--VIISE 129 +I + KQ+I I L E+W RL+ + SI+ E H++ ++ +II + Sbjct: 66 VIAFYIKNKQNIKSRIKPLLKEEWEIDRLNKVDLSIIMEAFCEF---HTLDIDRKIIIDQ 122 Query: 130 YVCIAHDFFYGDEPKFINAVLDKV 153 + + + + KFIN +LDK+ Sbjct: 123 AIVTSKRYSENNSYKFINFILDKL 146 >gi|163785218|ref|ZP_02179895.1| transcription antitermination protein NusB [Hydrogenivirga sp. 128-5-R1-1] gi|159879514|gb|EDP73341.1| transcription antitermination protein NusB [Hydrogenivirga sp. 128-5-R1-1] Length = 146 Score = 36.6 bits (83), Expect = 1.3, Method: Compositional matrix adjust. Identities = 41/146 (28%), Positives = 63/146 (43%), Gaps = 20/146 (13%) Query: 16 RGIARLAAVQALYQIDI-----IGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFR 70 R AR A++ LY DI I + E IS D+ L++ Sbjct: 6 RKKAREIALKVLYAYDIDKEKDINETLEETIS-------------DIRQNLSEKTLKYAY 52 Query: 71 VIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEY 130 II+GV + ID +I S L + W RL I ++LR G EL+ + + + Sbjct: 53 QIINGVYEYIDEIDNIIQSHLKD-WRLDRLGYIERALLRIGTYELVFSDIPDKKRVFMDI 111 Query: 131 VCIAHDFFYGDEP-KFINAVLDKVSR 155 + IA + ++ KFIN VL K+ + Sbjct: 112 LDIAKCYNLDEKALKFINGVLSKIYK 137 >gi|167747881|ref|ZP_02420008.1| hypothetical protein ANACAC_02610 [Anaerostipes caccae DSM 14662] gi|167652703|gb|EDR96832.1| hypothetical protein ANACAC_02610 [Anaerostipes caccae DSM 14662] Length = 448 Score = 36.6 bits (83), Expect = 1.3, Method: Compositional matrix adjust. Identities = 23/94 (24%), Positives = 46/94 (48%), Gaps = 2/94 (2%) Query: 65 DLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVE 124 D +F + G ++R+ ID +I L K ++ ++ S+LR G +++ +P Sbjct: 40 DRAFFTRLCQGTLERRLTIDYVID--LYSKTKVRKMKPLVRSLLRMGACQILFMDHIPDS 97 Query: 125 VIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEE 158 +E V +A + F+N VL +SR+++ Sbjct: 98 AACNECVKLAKKRGFSKLSGFVNGVLRTISRQKQ 131 >gi|218961232|ref|YP_001741007.1| putative 16S rRNA m5C967 methyltransferase, S-adenosyl-L-methionine-dependent [Candidatus Cloacamonas acidaminovorans] gi|167729889|emb|CAO80801.1| putative 16S rRNA m5C967 methyltransferase, S-adenosyl-L-methionine-dependent [Candidatus Cloacamonas acidaminovorans] Length = 438 Score = 36.6 bits (83), Expect = 1.4, Method: Compositional matrix adjust. Identities = 23/95 (24%), Positives = 46/95 (48%), Gaps = 1/95 (1%) Query: 65 DLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVE 124 D F ++ GV+ +D ++ + +K ++ D+ + +L G+ +L+ +S+P Sbjct: 38 DPALFYNLVKGVIKLYLKLDYILQQYVDKK-KYTDTDIKIKVLLYMGLYQLLYLNSIPDY 96 Query: 125 VIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEI 159 ++E V +A F F+NAVL R E+ Sbjct: 97 AAVNETVELAKTLFNPQVADFVNAVLRNYLRNPEV 131 >gi|119485390|ref|ZP_01619718.1| transcription antitermination protein NusB [Lyngbya sp. PCC 8106] gi|119457146|gb|EAW38272.1| transcription antitermination protein NusB [Lyngbya sp. PCC 8106] Length = 210 Score = 36.6 bits (83), Expect = 1.4, Method: Compositional matrix adjust. Identities = 25/82 (30%), Positives = 43/82 (52%), Gaps = 2/82 (2%) Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131 I+ + R+ ID +++ L + W +RL I ILR V EL+ + +V ++E + Sbjct: 119 ILTEIHARRTEIDEILNQALVD-WQINRLPRIDRDILRIAVTELLYLGTQE-QVALNEAI 176 Query: 132 CIAHDFFYGDEPKFINAVLDKV 153 +A + D +FIN VL +V Sbjct: 177 ELAKRYSDEDSYRFINGVLRRV 198 >gi|301321426|gb|ADK70069.1| ribosomal RNA small subunit methyltransferase B [Mycoplasma mycoides subsp. mycoides SC str. Gladysdale] Length = 423 Score = 36.2 bits (82), Expect = 1.4, Method: Compositional matrix adjust. Identities = 24/84 (28%), Positives = 44/84 (52%), Gaps = 5/84 (5%) Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131 ++HGV+ K H+D L++ + K + L +IL + ++I +S+P I++E V Sbjct: 44 LVHGVISNKIHLDYLLTKLIDVKKTSIDLQIILL----ISLYQMIYLNSIPNYAIVNESV 99 Query: 132 CIAHDFFYGDEPKFINAVLDKVSR 155 + + FINA+L+K R Sbjct: 100 NLIKT-TSQKQANFINAILNKFLR 122 >gi|167760433|ref|ZP_02432560.1| hypothetical protein CLOSCI_02807 [Clostridium scindens ATCC 35704] gi|167661932|gb|EDS06062.1| hypothetical protein CLOSCI_02807 [Clostridium scindens ATCC 35704] Length = 436 Score = 36.2 bits (82), Expect = 1.4, Method: Compositional matrix adjust. Identities = 23/87 (26%), Positives = 43/87 (49%), Gaps = 2/87 (2%) Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131 +++G ++ ID +I+ K ++ ++ I+R+ V +L SVP +++E V Sbjct: 50 VVNGTLEHMIEIDYIINQF--SKVKVQKMKPVIRMIIRSAVYQLKYMDSVPDSAVLNEAV 107 Query: 132 CIAHDFFYGDEPKFINAVLDKVSRKEE 158 +A + F+N VL VSR E Sbjct: 108 KLASKRGFSTLKGFVNGVLRSVSRNLE 134 >gi|15644260|ref|NP_229312.1| sun protein [Thermotoga maritima MSB8] gi|4982078|gb|AAD36579.1|AE001799_11 sun protein [Thermotoga maritima MSB8] Length = 431 Score = 36.2 bits (82), Expect = 1.4, Method: Compositional matrix adjust. Identities = 31/122 (25%), Positives = 61/122 (50%), Gaps = 8/122 (6%) Query: 40 IISEYETYRFCADTELD-VESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFS 98 ++ +YE +F + ++D V S D +F+ ++ GV+ +++ +D I+ L +K Sbjct: 12 LLRKYEKEKFISREDVDSVLSFLDDRDRRFFKELVWGVVRKEELLDWYINQLLKKK---- 67 Query: 99 RLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEE 158 + + LR G +L+ +SVP +SE V + + + K +NAVL ++ E Sbjct: 68 DIPPAVRVALRMGAYQLLFMNSVPDYAAVSETVKLVKNENFK---KLVNAVLRRLRTVPE 124 Query: 159 IK 160 K Sbjct: 125 PK 126 >gi|329938919|ref|ZP_08288293.1| ribosomal RNA small subunit methyltransferase B [Streptomyces griseoaurantiacus M045] gi|329301804|gb|EGG45697.1| ribosomal RNA small subunit methyltransferase B [Streptomyces griseoaurantiacus M045] Length = 472 Score = 36.2 bits (82), Expect = 1.5, Method: Compositional matrix adjust. Identities = 21/84 (25%), Positives = 41/84 (48%), Gaps = 3/84 (3%) Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131 +++G + R+ D ++++C+ +D + +L G +L+ +P +S V Sbjct: 69 LVYGTLRRQGTYDAILAACVDR--PLREVDPPVLDVLSLGAHQLLGTR-IPTHAAVSASV 125 Query: 132 CIAHDFFYGDEPKFINAVLDKVSR 155 +A KF+NAVL KV+R Sbjct: 126 ELARVVLGDGRAKFVNAVLRKVAR 149 >gi|210622490|ref|ZP_03293195.1| hypothetical protein CLOHIR_01143 [Clostridium hiranonis DSM 13275] gi|210154203|gb|EEA85209.1| hypothetical protein CLOHIR_01143 [Clostridium hiranonis DSM 13275] Length = 173 Score = 36.2 bits (82), Expect = 1.5, Method: Compositional matrix adjust. Identities = 26/100 (26%), Positives = 51/100 (51%), Gaps = 4/100 (4%) Query: 51 ADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRA 110 + E+D+E+ +++L++ + ++ + ID I + WS + + +ILR Sbjct: 70 TEEEIDLEN---YLNLDYVSNVCKIYEEKHEEIDEAIDK-YAKGWSIMTMPKVDVAILRL 125 Query: 111 GVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVL 150 + E+ S+P +V I+E + +A + PKFIN VL Sbjct: 126 AIAEIGFIDSIPEKVSINEAIEMAKMYCDDKSPKFINGVL 165 >gi|29833420|ref|NP_828054.1| RNA-binding Sun protein [Streptomyces avermitilis MA-4680] gi|29610543|dbj|BAC74589.1| putative RNA-binding Sun protein [Streptomyces avermitilis MA-4680] Length = 476 Score = 36.2 bits (82), Expect = 1.5, Method: Compositional matrix adjust. Identities = 22/86 (25%), Positives = 43/86 (50%), Gaps = 3/86 (3%) Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131 +++G + R+ D +I++C+ +D + +L GV +L+ +P +S V Sbjct: 69 LVYGTLRRQGTYDAVIAACVDR--PLREVDPPVLDVLSLGVHQLLGTR-IPTHAAVSASV 125 Query: 132 CIAHDFFYGDEPKFINAVLDKVSRKE 157 +A KF+NAVL KV++ + Sbjct: 126 ELARVVLGDGRAKFVNAVLRKVAQHD 151 >gi|260438372|ref|ZP_05792188.1| transcription antitermination factor NusB [Butyrivibrio crossotus DSM 2876] gi|292808958|gb|EFF68163.1| transcription antitermination factor NusB [Butyrivibrio crossotus DSM 2876] Length = 142 Score = 36.2 bits (82), Expect = 1.6, Method: Compositional matrix adjust. Identities = 27/76 (35%), Positives = 39/76 (51%), Gaps = 5/76 (6%) Query: 82 HIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGD 141 ID +IS +E W R+ SI+R V E++ ++ V ISE V +A YGD Sbjct: 70 EIDKVISEK-SEGWDIDRIGKAELSIMRIAVYEILYDDNIENAVSISEAVKLAKK--YGD 126 Query: 142 EPK--FINAVLDKVSR 155 E F+N VL K+ + Sbjct: 127 EKAYGFVNGVLAKIVK 142 >gi|223986295|ref|ZP_03636307.1| hypothetical protein HOLDEFILI_03617 [Holdemania filiformis DSM 12042] gi|223961734|gb|EEF66234.1| hypothetical protein HOLDEFILI_03617 [Holdemania filiformis DSM 12042] Length = 115 Score = 36.2 bits (82), Expect = 1.6, Method: Compositional matrix adjust. Identities = 25/87 (28%), Positives = 45/87 (51%), Gaps = 2/87 (2%) Query: 67 EWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVI 126 ++ R++I +D + I+ L + WSF RL ++ +IL EL + + +I Sbjct: 31 DFSRILILDTLDNENRYIQYINETLKD-WSFERLGVLEQAILLMACSEL-DHQTASAAII 88 Query: 127 ISEYVCIAHDFFYGDEPKFINAVLDKV 153 I E V +A D+ + + IN VLD++ Sbjct: 89 IDEAVRLAKDYCDDEAYRLINGVLDRI 115 >gi|148262276|ref|YP_001228982.1| sun protein [Geobacter uraniireducens Rf4] gi|146395776|gb|ABQ24409.1| sun protein [Geobacter uraniireducens Rf4] Length = 448 Score = 36.2 bits (82), Expect = 1.6, Method: Compositional matrix adjust. Identities = 33/123 (26%), Positives = 58/123 (47%), Gaps = 6/123 (4%) Query: 39 EIISEYETYRFCADTELDVE--SVYLH-VDLEWFRVIIHGVMDRKQHIDLLISSCLTEKW 95 EI+ + R AD +D E S +L D +++GV+ R+ +D +I+ +K Sbjct: 12 EILLRIDKERSYADILIDRELSSGFLQGPDRGLLTELVYGVLRRQGTLDYIINRFSKQK- 70 Query: 96 SFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSR 155 RL+ + +LR G+ ++ VPV ++E V +A F+NAVL R Sbjct: 71 -SERLERSVLVLLRIGLYQIFYLDRVPVSAAVNETVKLAK-VLAPRASGFVNAVLRSADR 128 Query: 156 KEE 158 + + Sbjct: 129 ERD 131 >gi|167750828|ref|ZP_02422955.1| hypothetical protein EUBSIR_01811 [Eubacterium siraeum DSM 15702] gi|167656263|gb|EDS00393.1| hypothetical protein EUBSIR_01811 [Eubacterium siraeum DSM 15702] Length = 439 Score = 36.2 bits (82), Expect = 1.6, Method: Compositional matrix adjust. Identities = 25/95 (26%), Positives = 47/95 (49%), Gaps = 4/95 (4%) Query: 65 DLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVE 124 D + + +GV++R+ +D LI F ++ + ILR G +L+ +SVP Sbjct: 39 DKAFSAALFYGVLERRMTLDYLIR--YYSGIEFDKIKTAVVEILRMGFYQLLFMNSVPDS 96 Query: 125 VIISEYVCIAHDFFYGDEPK-FINAVLDKVSRKEE 158 ++E V + D+ + K ++NA+L R E+ Sbjct: 97 AAVNESVALC-DYCNSTKAKGYVNAILRTFLRNEK 130 >gi|315023990|gb|EFT36992.1| Transcription termination protein NusB [Riemerella anatipestifer RA-YM] Length = 301 Score = 36.2 bits (82), Expect = 1.6, Method: Compositional matrix adjust. Identities = 23/67 (34%), Positives = 34/67 (50%), Gaps = 2/67 (2%) Query: 95 WSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVS 154 W R+ ++ IL A + EL P +VII+EY+ I+ F FIN +L K + Sbjct: 236 WELDRISLMDRVILIAAITELDHFPLTPSKVIINEYIEISKAFSTDKSQVFINGLLGKYA 295 Query: 155 RKEEIKR 161 E+I R Sbjct: 296 --EDINR 300 >gi|291557813|emb|CBL34930.1| ribosomal RNA small subunit methyltransferase RsmB [Eubacterium siraeum V10Sc8a] Length = 439 Score = 36.2 bits (82), Expect = 1.6, Method: Compositional matrix adjust. Identities = 25/95 (26%), Positives = 47/95 (49%), Gaps = 4/95 (4%) Query: 65 DLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVE 124 D + + +GV++R+ +D LI F ++ + ILR G +L+ +SVP Sbjct: 39 DKAFSAALFYGVLERRMTLDYLIR--YYSGIEFDKIKTAVVEILRMGFYQLLFMNSVPDS 96 Query: 125 VIISEYVCIAHDFFYGDEPK-FINAVLDKVSRKEE 158 ++E V + D+ + K ++NA+L R E+ Sbjct: 97 AAVNESVALC-DYCNSTKAKGYVNAILRTFLRNEK 130 >gi|291530595|emb|CBK96180.1| ribosomal RNA small subunit methyltransferase RsmB [Eubacterium siraeum 70/3] Length = 439 Score = 36.2 bits (82), Expect = 1.6, Method: Compositional matrix adjust. Identities = 25/95 (26%), Positives = 47/95 (49%), Gaps = 4/95 (4%) Query: 65 DLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVE 124 D + + +GV++R+ +D LI F ++ + ILR G +L+ +SVP Sbjct: 39 DKAFSAALFYGVLERRMTLDYLIR--YYSGIEFDKIKTAVVEILRMGFYQLLFMNSVPDS 96 Query: 125 VIISEYVCIAHDFFYGDEPK-FINAVLDKVSRKEE 158 ++E V + D+ + K ++NA+L R E+ Sbjct: 97 AAVNESVALC-DYCNSTKAKGYVNAILRTFLRNEK 130 >gi|294793720|ref|ZP_06758857.1| transcription antitermination factor NusB [Veillonella sp. 3_1_44] gi|294455290|gb|EFG23662.1| transcription antitermination factor NusB [Veillonella sp. 3_1_44] Length = 134 Score = 36.2 bits (82), Expect = 1.7, Method: Compositional matrix adjust. Identities = 30/107 (28%), Positives = 52/107 (48%), Gaps = 6/107 (5%) Query: 52 DTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISS-CLTEKWSFSRLDMILCSILRA 110 D + +++ +D + II GV+ + ID + C + K + LD + SILR Sbjct: 29 DVQFPEGNIHKAMDKAYANSIIEGVLSNVEAIDATLQPFCKSRK--VANLDKVDRSILRI 86 Query: 111 GVLELIECHSVPVE--VIISEYVCIAHDFFYGDEPKFINAVLDKVSR 155 V E+ P+E + I+E + +A +F K INA+LD ++ Sbjct: 87 AVWEM-NNKVEPLEPSIAINEAIQLAKEFGSDASYKLINAILDAYNK 132 >gi|170289195|ref|YP_001739433.1| sun protein [Thermotoga sp. RQ2] gi|170176698|gb|ACB09750.1| sun protein [Thermotoga sp. RQ2] Length = 431 Score = 36.2 bits (82), Expect = 1.7, Method: Compositional matrix adjust. Identities = 31/122 (25%), Positives = 61/122 (50%), Gaps = 8/122 (6%) Query: 40 IISEYETYRFCADTELD-VESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFS 98 ++ +YE +F + ++D V S D +F+ ++ GV+ +++ +D I+ L +K Sbjct: 12 LLRKYEKEKFISREDVDSVLSFLDDRDRRFFKELVWGVVRKEELLDWYINQLLKKK---- 67 Query: 99 RLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEE 158 + + LR G +L+ +SVP +SE V + + + K +NAVL ++ E Sbjct: 68 DVPPAVRVALRMGAYQLLFMNSVPDYAAVSETVKLVKNENFK---KLVNAVLRRLRTVPE 124 Query: 159 IK 160 K Sbjct: 125 PK 126 >gi|282866194|ref|ZP_06275241.1| Fmu (Sun) domain protein [Streptomyces sp. ACTE] gi|282558978|gb|EFB64533.1| Fmu (Sun) domain protein [Streptomyces sp. ACTE] Length = 477 Score = 36.2 bits (82), Expect = 1.7, Method: Compositional matrix adjust. Identities = 21/83 (25%), Positives = 41/83 (49%), Gaps = 3/83 (3%) Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131 +++G + R+ D ++++C+ +D + ++ GV +L+ +P +S V Sbjct: 67 LVYGTLRRQGTYDAIVAACVDR--PLREVDPPVLDVIEMGVHQLLGTR-IPTHAAVSASV 123 Query: 132 CIAHDFFYGDEPKFINAVLDKVS 154 +A KF+NAVL KVS Sbjct: 124 ELARVVLGEGRAKFVNAVLRKVS 146 >gi|189467494|ref|ZP_03016279.1| hypothetical protein BACINT_03883 [Bacteroides intestinalis DSM 17393] gi|189435758|gb|EDV04743.1| hypothetical protein BACINT_03883 [Bacteroides intestinalis DSM 17393] Length = 308 Score = 36.2 bits (82), Expect = 1.7, Method: Compositional matrix adjust. Identities = 19/75 (25%), Positives = 38/75 (50%), Gaps = 2/75 (2%) Query: 92 TEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLD 151 T W R+ + I++ + E++ ++PV V ++EYV IA + F+N LD Sbjct: 234 TRNWDLDRVAFMDVIIMQCALAEILSFPNIPVSVSLNEYVEIAKVYSTIKSGSFVNGTLD 293 Query: 152 KVSRKEEIKRSGCVS 166 + ++K+ G ++ Sbjct: 294 GIVN--QLKKEGKLA 306 >gi|167750987|ref|ZP_02423114.1| hypothetical protein EUBSIR_01972 [Eubacterium siraeum DSM 15702] gi|167656166|gb|EDS00296.1| hypothetical protein EUBSIR_01972 [Eubacterium siraeum DSM 15702] gi|291557466|emb|CBL34583.1| transcription antitermination factor NusB [Eubacterium siraeum V10Sc8a] Length = 143 Score = 36.2 bits (82), Expect = 1.7, Method: Compositional matrix adjust. Identities = 33/132 (25%), Positives = 63/132 (47%), Gaps = 14/132 (10%) Query: 20 RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79 R AA+ L+Q+ + + EI+ E + + E + +SV L GV + Sbjct: 12 REAALLILFQMKLNPETLDEIL---EDCKESFEMEYNSQSVKL----------AKGVAEH 58 Query: 80 KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139 + ++ +I S + R+ I +I++ + E+ C SVP +V I+E + A ++ Sbjct: 59 EDELNGIIES-YSPSRKLDRISYINLAIMKIALYEMKYCPSVPDKVAINEAIEFAKEYAD 117 Query: 140 GDEPKFINAVLD 151 + +FIN VL+ Sbjct: 118 KTDVRFINGVLN 129 >gi|224538936|ref|ZP_03679475.1| hypothetical protein BACCELL_03833 [Bacteroides cellulosilyticus DSM 14838] gi|224519454|gb|EEF88559.1| hypothetical protein BACCELL_03833 [Bacteroides cellulosilyticus DSM 14838] Length = 308 Score = 36.2 bits (82), Expect = 1.8, Method: Compositional matrix adjust. Identities = 19/75 (25%), Positives = 38/75 (50%), Gaps = 2/75 (2%) Query: 92 TEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLD 151 T W R+ + I++ + E++ ++PV V ++EYV IA + F+N LD Sbjct: 234 TRNWDLDRVAFMDVIIMQCALAEILSFPNIPVSVSLNEYVEIAKVYSTIKSGSFVNGTLD 293 Query: 152 KVSRKEEIKRSGCVS 166 + ++K+ G ++ Sbjct: 294 GIVN--QLKKEGKLA 306 >gi|295091953|emb|CBK78060.1| ribosomal RNA small subunit methyltransferase RsmB [Clostridium cf. saccharolyticum K10] Length = 472 Score = 36.2 bits (82), Expect = 1.8, Method: Compositional matrix adjust. Identities = 22/91 (24%), Positives = 43/91 (47%), Gaps = 2/91 (2%) Query: 68 WFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVII 127 + + ++ G ++R ID +I S + ++ + +ILR GV ++ VP Sbjct: 68 FIKRVVDGTLERLMQIDFIIESFSST--PLRKMKPTVRTILRMGVYQICYMDRVPDSAAC 125 Query: 128 SEYVCIAHDFFYGDEPKFINAVLDKVSRKEE 158 +E V + + F+N VL ++RK+E Sbjct: 126 NEAVKLTVKRGFSGLKGFVNGVLRNIARKKE 156 >gi|256545255|ref|ZP_05472620.1| N utilization substance protein B [Anaerococcus vaginalis ATCC 51170] gi|256399082|gb|EEU12694.1| N utilization substance protein B [Anaerococcus vaginalis ATCC 51170] Length = 58 Score = 36.2 bits (82), Expect = 1.8, Method: Compositional matrix adjust. Identities = 22/51 (43%), Positives = 31/51 (60%), Gaps = 1/51 (1%) Query: 106 SILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRK 156 SIL V E+ E +P+ V I+E V IA ++ D KFIN+VL K++ K Sbjct: 7 SILFLSVNEM-ENLDIPISVSINEAVNIAKEYSTSDGYKFINSVLGKIAEK 56 >gi|283797834|ref|ZP_06346987.1| ribosomal RNA small subunit methyltransferase B [Clostridium sp. M62/1] gi|291074522|gb|EFE11886.1| ribosomal RNA small subunit methyltransferase B [Clostridium sp. M62/1] Length = 472 Score = 35.8 bits (81), Expect = 1.8, Method: Compositional matrix adjust. Identities = 22/91 (24%), Positives = 43/91 (47%), Gaps = 2/91 (2%) Query: 68 WFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVII 127 + + ++ G ++R ID +I S + ++ + +ILR GV ++ VP Sbjct: 68 FIKRVVDGTLERLMQIDFIIESFSST--PLRKMKPTVRTILRMGVYQICYMDRVPDSAAC 125 Query: 128 SEYVCIAHDFFYGDEPKFINAVLDKVSRKEE 158 +E V + + F+N VL ++RK+E Sbjct: 126 NEAVKLTVKRGFSGLKGFVNGVLRNIARKKE 156 >gi|163841091|ref|YP_001625496.1| 16S rRNA m(5)C 967 methyltransferase [Renibacterium salmoninarum ATCC 33209] gi|162954567|gb|ABY24082.1| 16S rRNA m(5)C 967 methyltransferase [Renibacterium salmoninarum ATCC 33209] Length = 458 Score = 35.8 bits (81), Expect = 1.8, Method: Compositional matrix adjust. Identities = 22/84 (26%), Positives = 40/84 (47%), Gaps = 3/84 (3%) Query: 74 HGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCI 133 +G + K D +I+SC+ + +D + LR G +L+ +P +++ V + Sbjct: 43 YGALRGKGTYDAIIASCVDRP--LAEVDEAILDALRLGSHQLLAMR-IPPHAAVNQTVGL 99 Query: 134 AHDFFYGDEPKFINAVLDKVSRKE 157 A FINAVL K++ K+ Sbjct: 100 ARAVIGAGPASFINAVLRKIAAKD 123 >gi|297544782|ref|YP_003677084.1| sun protein [Thermoanaerobacter mathranii subsp. mathranii str. A3] gi|296842557|gb|ADH61073.1| sun protein [Thermoanaerobacter mathranii subsp. mathranii str. A3] Length = 444 Score = 35.8 bits (81), Expect = 1.9, Method: Compositional matrix adjust. Identities = 26/95 (27%), Positives = 45/95 (47%), Gaps = 5/95 (5%) Query: 64 VDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPV 123 +D + + ++ GV++RK +D ++S + + D L G+ +L+ VP Sbjct: 37 IDRGFTKELVFGVIERKYTLDFILSFFVKKPA-----DEKSKIFLEMGLYQLLYMDKVPS 91 Query: 124 EVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEE 158 I+E V IA + FINAVL R++E Sbjct: 92 YAAINETVNIAKNVLGIKRANFINAVLRSYEREKE 126 >gi|229918581|ref|YP_002887227.1| sun protein [Exiguobacterium sp. AT1b] gi|229470010|gb|ACQ71782.1| sun protein [Exiguobacterium sp. AT1b] Length = 443 Score = 35.8 bits (81), Expect = 1.9, Method: Compositional matrix adjust. Identities = 33/138 (23%), Positives = 60/138 (43%), Gaps = 15/138 (10%) Query: 20 RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79 R AA+ L +I+ G +T +++ + A D+ + +++G + R Sbjct: 4 REAALDTLMKIEQGGAYSTIAVNDTLKQKKVAPK-----------DVGLYTELVYGTLSR 52 Query: 80 KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139 K +D ++ + S +LD + +LR V +L VP ++ E V IA + Sbjct: 53 KGTLDYILKDRIR---SPKKLDKFVLPLLRMSVYQLFYLDKVPDRAVLHEAVEIAKKRGH 109 Query: 140 G-DEPKFINAVLDKVSRK 156 KF+N VL V R+ Sbjct: 110 HLGTSKFVNGVLRNVLRE 127 >gi|257126675|ref|YP_003164789.1| NusB antitermination factor [Leptotrichia buccalis C-1013-b] gi|257050614|gb|ACV39798.1| NusB antitermination factor [Leptotrichia buccalis C-1013-b] Length = 138 Score = 35.8 bits (81), Expect = 1.9, Method: Compositional matrix adjust. Identities = 21/66 (31%), Positives = 36/66 (54%), Gaps = 3/66 (4%) Query: 95 WSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVS 154 W++ RL I +L+ E I ++ E+ I+E + IA + Y D +F+N +L K+ Sbjct: 71 WTYERLGTIEKVLLKISFYE-ITIKNIGYEIAINEVLEIAKKYSYNDTKEFLNGILAKLV 129 Query: 155 R--KEE 158 + KEE Sbjct: 130 KDIKEE 135 >gi|313206914|ref|YP_004046091.1| nusb antitermination factor [Riemerella anatipestifer DSM 15868] gi|312446230|gb|ADQ82585.1| NusB antitermination factor [Riemerella anatipestifer DSM 15868] gi|325335649|gb|ADZ11923.1| NusB [Riemerella anatipestifer RA-GD] Length = 301 Score = 35.8 bits (81), Expect = 2.0, Method: Compositional matrix adjust. Identities = 23/67 (34%), Positives = 34/67 (50%), Gaps = 2/67 (2%) Query: 95 WSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVS 154 W R+ ++ IL A + EL P +VII+EY+ I+ F FIN +L K + Sbjct: 236 WELDRVSLMDRVILIAAITELDHFPLTPSKVIINEYIEISKAFSTDKSQVFINGLLGKYA 295 Query: 155 RKEEIKR 161 E+I R Sbjct: 296 --EDINR 300 >gi|222054190|ref|YP_002536552.1| sun protein [Geobacter sp. FRC-32] gi|221563479|gb|ACM19451.1| sun protein [Geobacter sp. FRC-32] Length = 448 Score = 35.8 bits (81), Expect = 2.0, Method: Compositional matrix adjust. Identities = 23/87 (26%), Positives = 44/87 (50%), Gaps = 3/87 (3%) Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131 +++GV+ R+ +D +I +++ RL+ + +LR G+ ++ VPV ++E V Sbjct: 48 LVYGVLRRQATLDHIIRRFSSQR--LERLERSVLLLLRIGLYQMFYLDRVPVSAAVNETV 105 Query: 132 CIAHDFFYGDEPKFINAVLDKVSRKEE 158 +A FINAVL R+ + Sbjct: 106 KLAK-VLVPRASGFINAVLRNADRERD 131 >gi|295094725|emb|CBK83816.1| ribosomal RNA small subunit methyltransferase RsmB [Coprococcus sp. ART55/1] Length = 445 Score = 35.8 bits (81), Expect = 2.1, Method: Compositional matrix adjust. Identities = 23/94 (24%), Positives = 44/94 (46%), Gaps = 2/94 (2%) Query: 65 DLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVE 124 D + ++ GV +++ +D +I+ K ++ ++ +LR G EL SVP Sbjct: 41 DRAYITRMVEGVTEQRIKLDYIINQF--SKTKVNKCKPLIRCVLRMGTYELFFMDSVPDS 98 Query: 125 VIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEE 158 + V +A D +G F+N VL ++R + Sbjct: 99 AACNLSVKLAVDHGFGSLRGFVNGVLRNIARNRD 132 >gi|297195546|ref|ZP_06912944.1| RNA-binding Sun protein [Streptomyces pristinaespiralis ATCC 25486] gi|297152839|gb|EDY65275.2| RNA-binding Sun protein [Streptomyces pristinaespiralis ATCC 25486] Length = 291 Score = 35.8 bits (81), Expect = 2.2, Method: Compositional matrix adjust. Identities = 21/84 (25%), Positives = 41/84 (48%), Gaps = 3/84 (3%) Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131 +++G + R+ D +I++C+ +D + +L G +L+ +P +S V Sbjct: 67 LVYGTLRRQGTYDAIIAACIDR--PLREVDPPVLDVLALGAHQLLGTR-IPTHAAVSASV 123 Query: 132 CIAHDFFYGDEPKFINAVLDKVSR 155 +A KF+NAVL K+S+ Sbjct: 124 ELARVVLGDGRAKFVNAVLRKISQ 147 >gi|160947101|ref|ZP_02094268.1| hypothetical protein PEPMIC_01033 [Parvimonas micra ATCC 33270] gi|158446235|gb|EDP23230.1| hypothetical protein PEPMIC_01033 [Parvimonas micra ATCC 33270] Length = 434 Score = 35.8 bits (81), Expect = 2.2, Method: Compositional matrix adjust. Identities = 22/95 (23%), Positives = 45/95 (47%), Gaps = 2/95 (2%) Query: 64 VDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPV 123 +D ++ R I++G ++ + ++D +I K + + + +ILR + ++I +P Sbjct: 33 LDSKFLREIVYGTLENRIYLDYIIKKLC--KLRIKKFNPYILNILRISIYQIIFMDKIPE 90 Query: 124 EVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEE 158 II+E V + F F+N L R +E Sbjct: 91 FAIINEAVNLTKVFKLKKFSSFVNGSLRNFLRNKE 125 >gi|166032716|ref|ZP_02235545.1| hypothetical protein DORFOR_02431 [Dorea formicigenerans ATCC 27755] gi|166027073|gb|EDR45830.1| hypothetical protein DORFOR_02431 [Dorea formicigenerans ATCC 27755] Length = 433 Score = 35.8 bits (81), Expect = 2.2, Method: Compositional matrix adjust. Identities = 22/85 (25%), Positives = 43/85 (50%), Gaps = 2/85 (2%) Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131 ++ G ++R+ ID +I+ K ++ ++ +ILR+ V +L VP + +E V Sbjct: 50 VVEGTLERQIEIDYIINQF--SKVKVNKQKPVIRTILRSSVYQLKYMDHVPDSAVCNEAV 107 Query: 132 CIAHDFFYGDEPKFINAVLDKVSRK 156 +A + + F+N VL +SR Sbjct: 108 KLAGKKGFVNLKGFVNGVLRNISRN 132 >gi|237749244|ref|ZP_04579724.1| N utilization substance protein B [Oxalobacter formigenes OXCC13] gi|229380606|gb|EEO30697.1| N utilization substance protein B [Oxalobacter formigenes OXCC13] Length = 156 Score = 35.8 bits (81), Expect = 2.2, Method: Compositional matrix adjust. Identities = 21/57 (36%), Positives = 30/57 (52%) Query: 100 LDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRK 156 L + +IL G EL +P V+I+E V + F D KF+N VLDK++ K Sbjct: 88 LSPVEHAILLLGAFELSNHIEIPYRVVINEAVELTKSFGGIDGHKFVNGVLDKLAAK 144 >gi|317472520|ref|ZP_07931840.1| ribosomal RNA small subunit methyltransferase B [Anaerostipes sp. 3_2_56FAA] gi|316899997|gb|EFV21991.1| ribosomal RNA small subunit methyltransferase B [Anaerostipes sp. 3_2_56FAA] Length = 448 Score = 35.8 bits (81), Expect = 2.2, Method: Compositional matrix adjust. Identities = 23/94 (24%), Positives = 46/94 (48%), Gaps = 2/94 (2%) Query: 65 DLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVE 124 D +F + G ++R+ ID +I L K ++ ++ S+LR G +++ +P Sbjct: 40 DRAFFTRLCQGTLERRLTIDYVID--LYSKTKERKMKPLVRSLLRMGACQILFMDHIPDS 97 Query: 125 VIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEE 158 +E V +A + F+N VL +SR+++ Sbjct: 98 AACNECVKLAKKRGFSKLSGFVNGVLRTISRQKQ 131 >gi|224500053|ref|ZP_03668402.1| hypothetical protein LmonF1_10399 [Listeria monocytogenes Finland 1988] Length = 399 Score = 35.8 bits (81), Expect = 2.2, Method: Compositional matrix adjust. Identities = 24/85 (28%), Positives = 41/85 (48%), Gaps = 5/85 (5%) Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131 +++G RK +D ++ L ++ D + ++LR V +L VP I++E Sbjct: 4 LVYGTTQRKITLDYYLAPFLNKEP-----DNWVKNLLRMSVYQLTYLDKVPEHAILNEAG 58 Query: 132 CIAHDFFYGDEPKFINAVLDKVSRK 156 IA + + KF+N VL V RK Sbjct: 59 DIAKNMGHQGVTKFVNGVLRNVIRK 83 >gi|193214990|ref|YP_001996189.1| sun protein [Chloroherpeton thalassium ATCC 35110] gi|193088467|gb|ACF13742.1| sun protein [Chloroherpeton thalassium ATCC 35110] Length = 443 Score = 35.8 bits (81), Expect = 2.3, Method: Compositional matrix adjust. Identities = 36/143 (25%), Positives = 65/143 (45%), Gaps = 19/143 (13%) Query: 19 ARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMD 78 AR AVQAL ++++ + ++ F + T L+ VD + I++G + Sbjct: 4 AREIAVQALREVEVNHAKSDTALNH-----FFSITALE------PVDRAFTMQIVYGTLR 52 Query: 79 RKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDF- 137 K ID +I + + ++D+ + +ILR G +L+ VP ++E V +A Sbjct: 53 EKMKIDHVIKQFY--RHDYDKMDIDVKNILRIGAYQLLFLSKVPRWAAVNESVELAKKLK 110 Query: 138 --FYGDEPKFINAVLDKVSRKEE 158 F G+ +N VL +S E Sbjct: 111 GQFLGN---LVNGVLRNISNNLE 130 >gi|212716890|ref|ZP_03325018.1| hypothetical protein BIFCAT_01834 [Bifidobacterium catenulatum DSM 16992] gi|225350765|ref|ZP_03741788.1| hypothetical protein BIFPSEUDO_02334 [Bifidobacterium pseudocatenulatum DSM 20438] gi|212660175|gb|EEB20750.1| hypothetical protein BIFCAT_01834 [Bifidobacterium catenulatum DSM 16992] gi|225158221|gb|EEG71463.1| hypothetical protein BIFPSEUDO_02334 [Bifidobacterium pseudocatenulatum DSM 20438] Length = 147 Score = 35.8 bits (81), Expect = 2.3, Method: Compositional matrix adjust. Identities = 33/136 (24%), Positives = 55/136 (40%), Gaps = 14/136 (10%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV-IIH 74 R AR A+ LY+ D G +++E +E L + + I+ Sbjct: 3 RSTARKRALNTLYEADEKGQDILSLLAER------------IEQPGAQTPLPEYAIEIVR 50 Query: 75 GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134 GV + ID + T W R+ ++ +ILR E++ VP V I E + +A Sbjct: 51 GVAEHIAAIDSTLDEHST-GWKVKRMGVVDRNILRIAAWEIMFNDDVPNMVAIDEALGLA 109 Query: 135 HDFFYGDEPKFINAVL 150 + P FI+ +L Sbjct: 110 KTLCDDESPAFIHGLL 125 >gi|256384049|gb|ACU78619.1| ribosomal RNA small subunit methyltransferase B [Mycoplasma mycoides subsp. capri str. GM12] gi|256384881|gb|ACU79450.1| ribosomal RNA small subunit methyltransferase B [Mycoplasma mycoides subsp. capri str. GM12] gi|296455325|gb|ADH21560.1| ribosomal RNA small subunit methyltransferase B [synthetic Mycoplasma mycoides JCVI-syn1.0] Length = 419 Score = 35.8 bits (81), Expect = 2.4, Method: Compositional matrix adjust. Identities = 24/91 (26%), Positives = 46/91 (50%), Gaps = 5/91 (5%) Query: 65 DLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVE 124 D ++ ++HGV+ K H+D L+ + K + L +IL + ++I +S+P Sbjct: 37 DKDFVFNLVHGVISNKIHLDYLLGKLIDVKKTSIDLQIILL----ISLYQMIYLNSIPNY 92 Query: 125 VIISEYVCIAHDFFYGDEPKFINAVLDKVSR 155 I++E + + + FINA+L+K R Sbjct: 93 AIVNESINLIKT-TSQKQANFINAILNKFLR 122 >gi|47096543|ref|ZP_00234133.1| sun protein [Listeria monocytogenes str. 1/2a F6854] gi|254899481|ref|ZP_05259405.1| hypothetical protein LmonJ_06694 [Listeria monocytogenes J0161] gi|254912380|ref|ZP_05262392.1| sun protein [Listeria monocytogenes J2818] gi|254936707|ref|ZP_05268404.1| sun protein [Listeria monocytogenes F6900] gi|47015075|gb|EAL06018.1| sun protein [Listeria monocytogenes str. 1/2a F6854] gi|258609304|gb|EEW21912.1| sun protein [Listeria monocytogenes F6900] gi|293590362|gb|EFF98696.1| sun protein [Listeria monocytogenes J2818] Length = 444 Score = 35.8 bits (81), Expect = 2.4, Method: Compositional matrix adjust. Identities = 24/85 (28%), Positives = 41/85 (48%), Gaps = 5/85 (5%) Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131 +++G RK +D ++ L ++ D + ++LR V +L VP I++E Sbjct: 49 LVYGTTQRKITLDYYLAPFLNKEP-----DNWVKNLLRMSVYQLTYLDKVPEHAILNEAG 103 Query: 132 CIAHDFFYGDEPKFINAVLDKVSRK 156 IA + + KF+N VL V RK Sbjct: 104 DIAKNMGHQGVTKFVNGVLRNVIRK 128 >gi|325298378|ref|YP_004258295.1| NusB antitermination factor [Bacteroides salanitronis DSM 18170] gi|324317931|gb|ADY35822.1| NusB antitermination factor [Bacteroides salanitronis DSM 18170] Length = 308 Score = 35.4 bits (80), Expect = 2.4, Method: Compositional matrix adjust. Identities = 20/68 (29%), Positives = 35/68 (51%), Gaps = 1/68 (1%) Query: 86 LISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKF 145 LIS + W R+ ++ I++ + E++ ++PV V ++EYV IA + F Sbjct: 229 LISEN-SRNWDLKRVAVMDVIIMQIALAEILSFPNIPVNVSLNEYVEIAKLYSTPKSGGF 287 Query: 146 INAVLDKV 153 IN LD + Sbjct: 288 INGTLDGI 295 >gi|290961866|ref|YP_003493048.1| RNA-binding Sun protein [Streptomyces scabiei 87.22] gi|260651392|emb|CBG74514.1| putative RNA-binding Sun protein [Streptomyces scabiei 87.22] Length = 452 Score = 35.4 bits (80), Expect = 2.4, Method: Compositional matrix adjust. Identities = 21/86 (24%), Positives = 42/86 (48%), Gaps = 3/86 (3%) Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131 +++G + R+ D +I+SC+ +D + +L G +L+ +P +S V Sbjct: 48 LVYGTLRRQGTYDAVIASCVDRP--LREVDPPVLDVLSLGAHQLLGTR-IPTHAAVSASV 104 Query: 132 CIAHDFFYGDEPKFINAVLDKVSRKE 157 +A KF+NAVL K+++ + Sbjct: 105 DLARVVLGDGRAKFVNAVLRKIAQHD 130 >gi|16803862|ref|NP_465347.1| hypothetical protein lmo1822 [Listeria monocytogenes EGD-e] gi|224501376|ref|ZP_03669683.1| hypothetical protein LmonFR_02455 [Listeria monocytogenes FSL R2-561] gi|254829183|ref|ZP_05233870.1| sun protein [Listeria monocytogenes FSL N3-165] gi|254831576|ref|ZP_05236231.1| hypothetical protein Lmon1_09493 [Listeria monocytogenes 10403S] gi|16411276|emb|CAC99900.1| lmo1822 [Listeria monocytogenes EGD-e] gi|258601593|gb|EEW14918.1| sun protein [Listeria monocytogenes FSL N3-165] Length = 444 Score = 35.4 bits (80), Expect = 2.4, Method: Compositional matrix adjust. Identities = 24/85 (28%), Positives = 41/85 (48%), Gaps = 5/85 (5%) Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131 +++G RK +D ++ L ++ D + ++LR V +L VP I++E Sbjct: 49 LVYGTTQRKITLDYYLAPFLNKEP-----DNWVKNLLRMSVYQLTYLDKVPEHAILNEAG 103 Query: 132 CIAHDFFYGDEPKFINAVLDKVSRK 156 IA + + KF+N VL V RK Sbjct: 104 DIAKNMGHQGVTKFVNGVLRNVIRK 128 >gi|284802268|ref|YP_003414133.1| hypothetical protein LM5578_2024 [Listeria monocytogenes 08-5578] gi|284995410|ref|YP_003417178.1| hypothetical protein LM5923_1975 [Listeria monocytogenes 08-5923] gi|284057830|gb|ADB68771.1| hypothetical protein LM5578_2024 [Listeria monocytogenes 08-5578] gi|284060877|gb|ADB71816.1| hypothetical protein LM5923_1975 [Listeria monocytogenes 08-5923] Length = 444 Score = 35.4 bits (80), Expect = 2.4, Method: Compositional matrix adjust. Identities = 24/85 (28%), Positives = 41/85 (48%), Gaps = 5/85 (5%) Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131 +++G RK +D ++ L ++ D + ++LR V +L VP I++E Sbjct: 49 LVYGTTQRKITLDYYLAPFLNKEP-----DNWVKNLLRMSVYQLTYLDKVPEHAILNEAG 103 Query: 132 CIAHDFFYGDEPKFINAVLDKVSRK 156 IA + + KF+N VL V RK Sbjct: 104 DIAKNMGHQGVTKFVNGVLRNVIRK 128 >gi|189462539|ref|ZP_03011324.1| hypothetical protein BACCOP_03229 [Bacteroides coprocola DSM 17136] gi|189430700|gb|EDU99684.1| hypothetical protein BACCOP_03229 [Bacteroides coprocola DSM 17136] Length = 308 Score = 35.4 bits (80), Expect = 2.6, Method: Compositional matrix adjust. Identities = 19/68 (27%), Positives = 36/68 (52%), Gaps = 1/68 (1%) Query: 86 LISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKF 145 LIS ++ W R+ ++ I++ + E++ ++P+ V ++EYV IA + F Sbjct: 229 LISEN-SKNWDLDRVAVMDVIIMQIALAEILSFPNIPINVSLNEYVEIAKLYSTPKSGGF 287 Query: 146 INAVLDKV 153 IN LD + Sbjct: 288 INGTLDGI 295 >gi|150390542|ref|YP_001320591.1| sun protein [Alkaliphilus metalliredigens QYMF] gi|149950404|gb|ABR48932.1| sun protein [Alkaliphilus metalliredigens QYMF] Length = 444 Score = 35.4 bits (80), Expect = 2.7, Method: Compositional matrix adjust. Identities = 37/143 (25%), Positives = 64/143 (44%), Gaps = 14/143 (9%) Query: 19 ARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMD 78 AR +A++ LY I +E E Y A + + VD + +++GV++ Sbjct: 3 ARESALKVLYAI-----------TEQEAYSNIALNQQFRAETHTPVDKAFVTELVYGVVE 51 Query: 79 RKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFF 138 ID +I T K +++ S+LR + ++ VPV ++E V ++ + Sbjct: 52 NLIWIDYVIDQFSTTKTI--KMNPWTLSLLRLAIYQIFFLDRVPVFAAVNESVDLSKKYC 109 Query: 139 YGDEPKFINAVLDKVSRKEEIKR 161 FIN VL + RK+EI R Sbjct: 110 -KHTTAFINGVLRNILRKKEIIR 131 >gi|220931836|ref|YP_002508744.1| sun protein [Halothermothrix orenii H 168] gi|219993146|gb|ACL69749.1| sun protein [Halothermothrix orenii H 168] Length = 440 Score = 35.4 bits (80), Expect = 2.8, Method: Compositional matrix adjust. Identities = 22/87 (25%), Positives = 43/87 (49%), Gaps = 2/87 (2%) Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131 +++GV+ +K+ +D ++S C +++ ++D + S LR + ++ SVP + E V Sbjct: 44 LVYGVLRQKKRLDYMLS-CFSKR-PLRKMDNEVLSALRVALYQIEYTDSVPARAAVYETV 101 Query: 132 CIAHDFFYGDEPKFINAVLDKVSRKEE 158 F KF N VL R ++ Sbjct: 102 EALKSFTGHGAVKFTNGVLRSYLRNKD 128 >gi|283455658|ref|YP_003360222.1| N utilization substance protein [Bifidobacterium dentium Bd1] gi|283102292|gb|ADB09398.1| nusB N utilization substance protein [Bifidobacterium dentium Bd1] Length = 86 Score = 35.4 bits (80), Expect = 2.8, Method: Compositional matrix adjust. Identities = 20/63 (31%), Positives = 31/63 (49%) Query: 92 TEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLD 151 + W R+ ++ +ILR V E++ VP V I E + +A D P FI+ +L Sbjct: 6 STGWKVKRMGVVDRNILRIAVWEIMFNDDVPNMVAIDEALGLAKTLCDDDSPAFIHGLLS 65 Query: 152 KVS 154 VS Sbjct: 66 AVS 68 >gi|308177500|ref|YP_003916906.1| transcription antitermination factor NusB [Arthrobacter arilaitensis Re117] gi|307744963|emb|CBT75935.1| transcription antitermination factor NusB [Arthrobacter arilaitensis Re117] Length = 136 Score = 35.4 bits (80), Expect = 2.9, Method: Compositional matrix adjust. Identities = 28/87 (32%), Positives = 45/87 (51%), Gaps = 1/87 (1%) Query: 67 EWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVI 126 E+ II GVM ID ++ S + + W+ R+ + S LR GV EL+ VP V Sbjct: 42 EYSLTIIEGVMAHLDRIDEVLESYVKD-WTIERMPAVDRSALRIGVWELLYNDDVPDAVA 100 Query: 127 ISEYVCIAHDFFYGDEPKFINAVLDKV 153 ++E V + + P+F+N VL ++ Sbjct: 101 VAEAVVNVRELSTDESPEFVNGVLGRI 127 >gi|148270410|ref|YP_001244870.1| sun protein [Thermotoga petrophila RKU-1] gi|147735954|gb|ABQ47294.1| sun protein [Thermotoga petrophila RKU-1] Length = 431 Score = 35.4 bits (80), Expect = 2.9, Method: Compositional matrix adjust. Identities = 31/122 (25%), Positives = 60/122 (49%), Gaps = 8/122 (6%) Query: 40 IISEYETYRFCADTELD-VESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFS 98 ++ +YE +F ++D V S D +F+ ++ GV+ +++ +D I+ L +K Sbjct: 12 LLRKYEKEKFILREDVDSVLSFLDDKDRRFFKELVWGVVRKEELLDWYINQLLKKK---- 67 Query: 99 RLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEE 158 + + LR G +L+ +SVP +SE V + + + K +NAVL ++ E Sbjct: 68 DIPPAVRVALRMGAYQLLFMNSVPDYAAVSETVKLVKNENFK---KLVNAVLRRLRTVPE 124 Query: 159 IK 160 K Sbjct: 125 PK 126 >gi|312797049|ref|YP_004029971.1| N utilization substance protein B [Burkholderia rhizoxinica HKI 454] gi|312168824|emb|CBW75827.1| N utilization substance protein B [Burkholderia rhizoxinica HKI 454] Length = 60 Score = 35.4 bits (80), Expect = 3.0, Method: Compositional matrix adjust. Identities = 18/46 (39%), Positives = 28/46 (60%), Gaps = 3/46 (6%) Query: 121 VPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVS---RKEEIKRSG 163 +P V+I+E V +A F D K++N VLDK++ R +E+K G Sbjct: 15 IPYRVVINEAVELAKTFGGADGYKYVNGVLDKLAVTMRADEVKARG 60 >gi|188994695|ref|YP_001928947.1| probable nitrogen utilization substance protein [Porphyromonas gingivalis ATCC 33277] gi|188594375|dbj|BAG33350.1| probable nitrogen utilization substance protein [Porphyromonas gingivalis ATCC 33277] Length = 348 Score = 35.0 bits (79), Expect = 3.2, Method: Compositional matrix adjust. Identities = 17/60 (28%), Positives = 31/60 (51%) Query: 94 KWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKV 153 W R+ + I++ + EL+ ++PV V I+EY+ ++ F F+N +LD V Sbjct: 277 NWEVDRIADMDMLIMQLAITELLHFPNIPVLVTINEYIDLSKLFSTPKSGTFVNGLLDAV 336 >gi|23098962|ref|NP_692428.1| hypothetical protein OB1507 [Oceanobacillus iheyensis HTE831] gi|22777190|dbj|BAC13463.1| hypothetical conserved protein [Oceanobacillus iheyensis HTE831] Length = 448 Score = 35.0 bits (79), Expect = 3.5, Method: Compositional matrix adjust. Identities = 22/85 (25%), Positives = 41/85 (48%), Gaps = 3/85 (3%) Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131 +++G + + +D +S + K +LD+ + S+LR ++I VP +I E V Sbjct: 47 VVYGSLQHQMTLDYYLSKFVKSK---KKLDIWVQSLLRMSFYQMIYLEKVPDHAVIHESV 103 Query: 132 CIAHDFFYGDEPKFINAVLDKVSRK 156 IA + F+N VL + R+ Sbjct: 104 EIAKQRGHKGISSFVNGVLRSLQRQ 128 >gi|34540589|ref|NP_905068.1| NusB family protein [Porphyromonas gingivalis W83] gi|34396902|gb|AAQ65967.1| NusB family protein [Porphyromonas gingivalis W83] Length = 364 Score = 35.0 bits (79), Expect = 3.5, Method: Compositional matrix adjust. Identities = 17/60 (28%), Positives = 31/60 (51%) Query: 94 KWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKV 153 W R+ + I++ + EL+ ++PV V I+EY+ ++ F F+N +LD V Sbjct: 293 NWEVDRIADMDMLIMQLAIAELLHFPNIPVLVTINEYIDLSKLFSTPKSGTFVNGLLDAV 352 >gi|325662242|ref|ZP_08150857.1| ribosomal RNA small subunit methyltransferase B [Lachnospiraceae bacterium 4_1_37FAA] gi|325471494|gb|EGC74715.1| ribosomal RNA small subunit methyltransferase B [Lachnospiraceae bacterium 4_1_37FAA] Length = 452 Score = 35.0 bits (79), Expect = 3.5, Method: Compositional matrix adjust. Identities = 21/84 (25%), Positives = 42/84 (50%), Gaps = 2/84 (2%) Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131 ++ G ++R ID +I+ K +++ ++ +ILR+ V +L VP + +E V Sbjct: 50 VVEGTLERMIEIDYIINQFSNVK--VNKMKPVIRTILRSAVYQLKYMDGVPDSAVCNEAV 107 Query: 132 CIAHDFFYGDEPKFINAVLDKVSR 155 +A + F+N VL ++R Sbjct: 108 KLAEKKGFRSLKGFVNGVLRTIAR 131 >gi|260891342|ref|ZP_05902605.1| transcription antitermination factor NusB [Leptotrichia hofstadii F0254] gi|260858725|gb|EEX73225.1| transcription antitermination factor NusB [Leptotrichia hofstadii F0254] Length = 138 Score = 35.0 bits (79), Expect = 3.6, Method: Compositional matrix adjust. Identities = 23/89 (25%), Positives = 44/89 (49%), Gaps = 2/89 (2%) Query: 65 DLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVE 124 ++++ R I +++ K + I L + W++ RL I +L+ E I + E Sbjct: 42 EIDFLRSYITEIIENKDILTDRIRQVL-DGWTYERLGTIEKVLLKISFYE-ITIKDIGYE 99 Query: 125 VIISEYVCIAHDFFYGDEPKFINAVLDKV 153 + I+E + IA + Y D F+N +L K+ Sbjct: 100 IAINEVLEIAKKYSYNDTKDFLNGILAKL 128 >gi|297626339|ref|YP_003688102.1| Transcription antitermination factor (N utilization substance protein B homolog) [Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1] gi|296922104|emb|CBL56672.1| Transcription antitermination factor (N utilization substance protein B homolog) [Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1] Length = 208 Score = 35.0 bits (79), Expect = 3.8, Method: Compositional matrix adjust. Identities = 21/90 (23%), Positives = 47/90 (52%), Gaps = 1/90 (1%) Query: 67 EWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVI 126 ++ R I+ G + I+ I LT W+ R+ + ++ R V EL + ++ ++V Sbjct: 76 DFTRQILDGYSEHGHEINEHIDRALTGDWTLERMSRVDRNLARIAVWEL-DFTTIDLKVA 134 Query: 127 ISEYVCIAHDFFYGDEPKFINAVLDKVSRK 156 ISE + +A++ + F+N +L +++ + Sbjct: 135 ISEAMELANELSNDESVTFLNGLLARIAEE 164 >gi|266624677|ref|ZP_06117612.1| ribosomal RNA small subunit methyltransferase B [Clostridium hathewayi DSM 13479] gi|288863456|gb|EFC95754.1| ribosomal RNA small subunit methyltransferase B [Clostridium hathewayi DSM 13479] Length = 442 Score = 35.0 bits (79), Expect = 3.8, Method: Compositional matrix adjust. Identities = 23/90 (25%), Positives = 47/90 (52%), Gaps = 3/90 (3%) Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131 I+ G ++ +D +I+S + K ++ ++ ++LR V +++ VP + +E V Sbjct: 50 IVEGTVEYTLQLDYVINSYSSVK--VKKMKPVIRTLLRMSVYQILYMDRVPDSAVCNEAV 107 Query: 132 CIAHDFFYGDEPKFINAVLDKVSR-KEEIK 160 +A + F+N VL +SR KE++K Sbjct: 108 KLAQKRKFTGLKGFVNGVLRGISRNKEQLK 137 >gi|189347315|ref|YP_001943844.1| sun protein [Chlorobium limicola DSM 245] gi|189341462|gb|ACD90865.1| sun protein [Chlorobium limicola DSM 245] Length = 451 Score = 35.0 bits (79), Expect = 3.8, Method: Compositional matrix adjust. Identities = 21/83 (25%), Positives = 41/83 (49%), Gaps = 2/83 (2%) Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131 +++GV+ R+ +D I + + + +L +ILR G +LI +P ++E V Sbjct: 51 LVNGVLRRRLTLDTFIGRYYHHR--YEKAAPVLKNILRIGAYQLIYLDRIPHWAAVNESV 108 Query: 132 CIAHDFFYGDEPKFINAVLDKVS 154 +A + K +NAVL ++ Sbjct: 109 SLARRYKGEHMAKLVNAVLRNIT 131 >gi|331086043|ref|ZP_08335126.1| ribosomal RNA small subunit methyltransferase B [Lachnospiraceae bacterium 9_1_43BFAA] gi|330406966|gb|EGG86471.1| ribosomal RNA small subunit methyltransferase B [Lachnospiraceae bacterium 9_1_43BFAA] Length = 452 Score = 35.0 bits (79), Expect = 3.9, Method: Compositional matrix adjust. Identities = 21/84 (25%), Positives = 42/84 (50%), Gaps = 2/84 (2%) Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131 ++ G ++R ID +I+ K +++ ++ +ILR+ V +L VP + +E V Sbjct: 50 VVEGTLERMIEIDYIINQFSNVK--VNKMKPVIRTILRSAVYQLKYMDGVPDSAVCNEAV 107 Query: 132 CIAHDFFYGDEPKFINAVLDKVSR 155 +A + F+N VL ++R Sbjct: 108 KLAEKKGFRSLKGFVNGVLRTIAR 131 >gi|302671346|ref|YP_003831306.1| rRNA small subunit methyltransferase B Sun [Butyrivibrio proteoclasticus B316] gi|302395819|gb|ADL34724.1| rRNA small subunit methyltransferase B Sun [Butyrivibrio proteoclasticus B316] Length = 450 Score = 35.0 bits (79), Expect = 3.9, Method: Compositional matrix adjust. Identities = 25/97 (25%), Positives = 46/97 (47%), Gaps = 3/97 (3%) Query: 65 DLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVE 124 D + + + G ++R ID +I S K ++ + +++R +++ SVP Sbjct: 40 DKSFIKRVTEGCLERNIQIDYIIDSYA--KTPVRQMQPFIRALMRMSTYQIMFMDSVPDS 97 Query: 125 VIISEYVCIAHDFFYGDEPKFINAVLDKVSR-KEEIK 160 +E V +A + F+N VL VSR K++IK Sbjct: 98 AACNEAVKLAAKHKFAGLKGFVNGVLRNVSRGKDQIK 134 >gi|134094270|ref|YP_001099345.1| transcription termination, L factor (N utilization substance protein B) [Herminiimonas arsenicoxydans] gi|133738173|emb|CAL61218.1| N utilization substance protein B homolog (Protein NusB) [Herminiimonas arsenicoxydans] Length = 156 Score = 34.7 bits (78), Expect = 4.0, Method: Compositional matrix adjust. Identities = 31/125 (24%), Positives = 58/125 (46%), Gaps = 15/125 (12%) Query: 47 YRFCADTELDVESVYLHV---------DLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSF 97 Y++ + E DV ++ H+ D E F +++G + + + ++ + + Sbjct: 29 YQWLLNNE-DVRTIENHIRQAHGFDKADAEHFDALLYGTVKQVGELRAGLAPLIDRE--I 85 Query: 98 SRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVS--- 154 S L + + L G EL +P +V+I+E V + F D K++N VLDK + Sbjct: 86 SALSPVEHAALLIGAFELKNHIEIPYKVVINEAVELTKSFGGIDGHKYVNGVLDKFAAGV 145 Query: 155 RKEEI 159 R+ EI Sbjct: 146 REPEI 150 >gi|89898049|ref|YP_515159.1| transcription antitermination protein NusB [Chlamydophila felis Fe/C-56] gi|89331421|dbj|BAE81014.1| N utilization protein B [Chlamydophila felis Fe/C-56] Length = 154 Score = 34.7 bits (78), Expect = 4.0, Method: Compositional matrix adjust. Identities = 19/80 (23%), Positives = 42/80 (52%), Gaps = 1/80 (1%) Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135 ++ + +DLLI+ + + SF +L ++ ++LR + E + ++I+E + Sbjct: 71 ILAKSPELDLLIAQTV-KNTSFEKLTLMEKNVLRLALFEHFHGQHINAAILIAEATRLVK 129 Query: 136 DFFYGDEPKFINAVLDKVSR 155 F Y + F++AVL+ + R Sbjct: 130 KFSYTEACSFVHAVLNDIFR 149 >gi|152979861|ref|YP_001354028.1| N utilization substance protein B [Janthinobacterium sp. Marseille] gi|151279938|gb|ABR88348.1| N utilization substance protein B [Janthinobacterium sp. Marseille] Length = 156 Score = 34.7 bits (78), Expect = 4.2, Method: Compositional matrix adjust. Identities = 35/147 (23%), Positives = 63/147 (42%), Gaps = 16/147 (10%) Query: 8 KDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLE 67 K+ HR AR A+Q LYQ ++ +I +T + + D E Sbjct: 12 KNRTPRHR---AREFALQGLYQW-LLNNEDVRVI----------ETHIRQAHGFDKADAE 57 Query: 68 WFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVII 127 F +++G + + + ++ + + S L + + L G EL +P +V+I Sbjct: 58 HFDALLYGTVKQVGELRAGLAPLIDRE--ISALSPVEHAALLIGAFELKNHIEIPYKVVI 115 Query: 128 SEYVCIAHDFFYGDEPKFINAVLDKVS 154 +E V + F D K++N VLDK + Sbjct: 116 NEAVELTKSFGGIDGHKYVNGVLDKFA 142 >gi|138894477|ref|YP_001124930.1| ornithine cyclodeaminase/mu-crystallin family protein [Geobacillus thermodenitrificans NG80-2] gi|134265990|gb|ABO66185.1| Ornithine cyclodeaminase/mu-crystallin family protein [Geobacillus thermodenitrificans NG80-2] Length = 327 Score = 34.7 bits (78), Expect = 4.2, Method: Compositional matrix adjust. Identities = 25/87 (28%), Positives = 39/87 (44%), Gaps = 8/87 (9%) Query: 23 AVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYL----HVDLEWF----RVIIH 74 A +A+ Q DI+ CST + + T + YL +D+E R+++ Sbjct: 187 ANEAVRQADIVVCSTRSEQPVFSSRALQPGTHVSAIGSYLPHMRELDVETIVMADRIVVD 246 Query: 75 GVMDRKQHIDLLISSCLTEKWSFSRLD 101 V K LI + + KWSFSR+D Sbjct: 247 TVEGAKHEAGELIQAAESGKWSFSRID 273 >gi|196247922|ref|ZP_03146624.1| Ornithine cyclodeaminase [Geobacillus sp. G11MC16] gi|196212706|gb|EDY07463.1| Ornithine cyclodeaminase [Geobacillus sp. G11MC16] Length = 327 Score = 34.7 bits (78), Expect = 4.4, Method: Compositional matrix adjust. Identities = 25/87 (28%), Positives = 39/87 (44%), Gaps = 8/87 (9%) Query: 23 AVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYL----HVDLEWF----RVIIH 74 A +A+ Q DI+ CST + + T + YL +D+E R+++ Sbjct: 187 ANEAVRQADIVVCSTRSEQPVFSSRALQPGTHVSAIGSYLPHMRELDVETIVMADRIVVD 246 Query: 75 GVMDRKQHIDLLISSCLTEKWSFSRLD 101 V K LI + + KWSFSR+D Sbjct: 247 TVEGAKHEAGELIQAAESGKWSFSRID 273 >gi|333031441|ref|ZP_08459502.1| NusB antitermination factor [Bacteroides coprosuis DSM 18011] gi|332742038|gb|EGJ72520.1| NusB antitermination factor [Bacteroides coprosuis DSM 18011] Length = 308 Score = 34.7 bits (78), Expect = 4.6, Method: Compositional matrix adjust. Identities = 16/72 (22%), Positives = 37/72 (51%), Gaps = 2/72 (2%) Query: 92 TEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLD 151 T+ W R+ ++ +++ + E++ ++P+ V +EY+ +A + FIN LD Sbjct: 234 TKNWELDRIALMDVVLMQCALAEVLSFPNIPLSVTFNEYLDLAKLYSTHKSGGFINGTLD 293 Query: 152 KVSRKEEIKRSG 163 + ++K+ G Sbjct: 294 SIIN--QLKKEG 303 >gi|262340975|ref|YP_003283830.1| transcription antitermination factor NusB [Blattabacterium sp. (Blattella germanica) str. Bge] gi|262272312|gb|ACY40220.1| transcription antitermination factor NusB [Blattabacterium sp. (Blattella germanica) str. Bge] Length = 300 Score = 34.7 bits (78), Expect = 4.7, Method: Compositional matrix adjust. Identities = 18/76 (23%), Positives = 40/76 (52%), Gaps = 1/76 (1%) Query: 80 KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139 K+ + LI+ ++ W+ R+ ++ IL+ + E + ++P + ++EY+ I F Sbjct: 210 KEEFNSLIND-ISNNWNIKRIAILDLIILQMAICEFLYFPNIPPKATMNEYIEITKIFCM 268 Query: 140 GDEPKFINAVLDKVSR 155 FIN +LD++ + Sbjct: 269 EKSKIFINGILDQIFK 284 >gi|323342016|ref|ZP_08082249.1| hypothetical protein HMPREF0357_10429 [Erysipelothrix rhusiopathiae ATCC 19414] gi|322464441|gb|EFY09634.1| hypothetical protein HMPREF0357_10429 [Erysipelothrix rhusiopathiae ATCC 19414] Length = 134 Score = 34.7 bits (78), Expect = 4.9, Method: Compositional matrix adjust. Identities = 29/80 (36%), Positives = 38/80 (47%), Gaps = 2/80 (2%) Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131 ++ V RK I LT KW F RL I +IL EL + V VI++E V Sbjct: 55 VVMNVEARKDIYSRAIDHYLT-KWRFDRLGFIEQAILLMACAELELGYQDKV-VIVNEAV 112 Query: 132 CIAHDFFYGDEPKFINAVLD 151 +A DF + K IN V+D Sbjct: 113 NLAKDFSDEESYKLINGVID 132 >gi|229495644|ref|ZP_04389373.1| NusB family protein [Porphyromonas endodontalis ATCC 35406] gi|229317414|gb|EEN83318.1| NusB family protein [Porphyromonas endodontalis ATCC 35406] Length = 348 Score = 34.7 bits (78), Expect = 5.0, Method: Compositional matrix adjust. Identities = 15/58 (25%), Positives = 30/58 (51%) Query: 94 KWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLD 151 W R+ + IL+ + EL+ ++P V ++EY+ +A + + F+N +LD Sbjct: 276 NWDMDRVTDVDMIILQMALAELLSFPTIPTTVTLNEYIELAKIYSTAESGVFVNGLLD 333 >gi|218961705|ref|YP_001741480.1| N utilization substance protein B [Candidatus Cloacamonas acidaminovorans] gi|167730362|emb|CAO81274.1| N utilization substance protein B [Candidatus Cloacamonas acidaminovorans] Length = 153 Score = 34.3 bits (77), Expect = 5.4, Method: Compositional matrix adjust. Identities = 41/157 (26%), Positives = 65/157 (41%), Gaps = 25/157 (15%) Query: 12 LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFC----------ADTE--LDVES 59 + RR AR AVQ LY ++ +E+ +Y Y A+ E Sbjct: 1 MGQRRK-AREMAVQCLYSLEF-----SEVEKDYREYGLLNEYPDILLSLAEAEHIQPNSP 54 Query: 60 VYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECH 119 VY D E + I + + ID L++ W + ++ SIL EL+ Sbjct: 55 VYAFAD-ELVKNTIINIEQVESEID-----KLSDNWELEDIALLDRSILCLAAYELL-FT 107 Query: 120 SVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRK 156 P V+I+E + IA F KFIN +LD ++++ Sbjct: 108 DTPAPVVINEAIEIAKKFSSEASGKFINGILDALNKE 144 >gi|188997200|ref|YP_001931451.1| NusB antitermination factor [Sulfurihydrogenibium sp. YO3AOP1] gi|188932267|gb|ACD66897.1| NusB antitermination factor [Sulfurihydrogenibium sp. YO3AOP1] Length = 168 Score = 34.3 bits (77), Expect = 5.7, Method: Compositional matrix adjust. Identities = 42/181 (23%), Positives = 78/181 (43%), Gaps = 26/181 (14%) Query: 3 IQDNKKDLKLSHRRGI--ARLAAVQALYQIDIIGCSTTEIISEY-ETYRFCADTELDVES 59 ++ K LK +R + AR +++ L+ D ++ E+ T +F + + Sbjct: 1 MKKKNKSLKFLRKRLLKAARDLSMRILFAYDFRKEDLFNVLEEFLNTKKFSPEIK----- 55 Query: 60 VYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECH 119 E+ +++ + Q ID +I S L + W F R+ I ++LR GV EL+ H Sbjct: 56 -------EYVLKVVNFYNENSQEIDDIIKSHL-KNWRFERIGYIERAVLRLGVSELLIIH 107 Query: 120 SV--PVEVIISEYVCIAHDFF-----YGDEP---KFINAVLDKVSRKEEIKRSGCVSAIT 169 S E+ E + D Y + KF+N +L K++++ E + +T Sbjct: 108 SKEESKELKDKEIRILFLDLLDLVECYTNSKLSVKFVNGILGKINKELEQNENSIHIGLT 167 Query: 170 Q 170 Q Sbjct: 168 Q 168 >gi|281412717|ref|YP_003346796.1| sun protein [Thermotoga naphthophila RKU-10] gi|281373820|gb|ADA67382.1| sun protein [Thermotoga naphthophila RKU-10] Length = 431 Score = 34.3 bits (77), Expect = 5.8, Method: Compositional matrix adjust. Identities = 31/122 (25%), Positives = 59/122 (48%), Gaps = 8/122 (6%) Query: 40 IISEYETYRFCADTELD-VESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFS 98 ++ +YE +F ++D V S D +F+ ++ GV+ +++ +D I+ L +K Sbjct: 12 LLRKYEKEKFILREDVDSVLSFLDDKDRRFFKELVWGVVRKEELLDWYINQLLKKK---- 67 Query: 99 RLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEE 158 + + LR G +L+ +SVP +SE V + + K +NAVL ++ E Sbjct: 68 DIPPAVRVALRMGAYQLLFMNSVPDYAAVSETVKLVKSENFK---KLVNAVLRRLRTVPE 124 Query: 159 IK 160 K Sbjct: 125 PK 126 >gi|50365148|ref|YP_053573.1| transcription termination factor [Mesoplasma florum L1] gi|50363704|gb|AAT75689.1| transcription termination factor [Mesoplasma florum L1] Length = 134 Score = 34.3 bits (77), Expect = 6.8, Method: Compositional matrix adjust. Identities = 22/63 (34%), Positives = 32/63 (50%), Gaps = 1/63 (1%) Query: 91 LTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVL 150 L+ W + R+ + SIL G E+I P V I+E V + + + KF+NA L Sbjct: 70 LSANWKWERIPTYIQSILIIGAYEII-FTPTPKAVTINELVNLVKENEVDFDYKFVNACL 128 Query: 151 DKV 153 DKV Sbjct: 129 DKV 131 >gi|283769473|ref|ZP_06342369.1| transcription antitermination factor NusB [Bulleidia extructa W1219] gi|283103741|gb|EFC05127.1| transcription antitermination factor NusB [Bulleidia extructa W1219] Length = 124 Score = 33.9 bits (76), Expect = 7.4, Method: Compositional matrix adjust. Identities = 26/84 (30%), Positives = 37/84 (44%), Gaps = 2/84 (2%) Query: 68 WFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVII 127 +F ++ + Q I+ L E W+F RL I +IL G E V +II Sbjct: 41 YFIRVVENAQEHIQEYTNYINQVL-ENWTFDRLGTIEKAILLIGCAEF-SLKEVAAVIII 98 Query: 128 SEYVCIAHDFFYGDEPKFINAVLD 151 E V +A + D + IN VLD Sbjct: 99 DEAVELAKTYGEADSYRLINNVLD 122 >gi|194336038|ref|YP_002017832.1| sun protein [Pelodictyon phaeoclathratiforme BU-1] gi|194308515|gb|ACF43215.1| sun protein [Pelodictyon phaeoclathratiforme BU-1] Length = 445 Score = 33.9 bits (76), Expect = 8.2, Method: Compositional matrix adjust. Identities = 21/83 (25%), Positives = 43/83 (51%), Gaps = 2/83 (2%) Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131 +++GV+ + +D +I+ K + I+ +ILR GV +++ + VP ++E V Sbjct: 46 LVNGVLRYRLQLDFVIAQFYHHK--LEKAAPIMKNILRLGVYQILFLNKVPDWAAVNECV 103 Query: 132 CIAHDFFYGDEPKFINAVLDKVS 154 +A + K +N VL K++ Sbjct: 104 KLARKYKGERMSKLVNGVLRKIT 126 >gi|212550794|ref|YP_002309111.1| transcription termination factor NusB [Candidatus Azobacteroides pseudotrichonymphae genomovar. CFP2] gi|212549032|dbj|BAG83700.1| transcription termination factor NusB [Candidatus Azobacteroides pseudotrichonymphae genomovar. CFP2] Length = 305 Score = 33.9 bits (76), Expect = 8.4, Method: Compositional matrix adjust. Identities = 14/61 (22%), Positives = 32/61 (52%) Query: 93 EKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDK 152 + W R+ ++ I++ + EL ++P++V ++EY+ +A + FIN +L Sbjct: 236 KNWDKKRIALLDLIIMQMALAELNNFPAIPLKVTLNEYIDLARYYSTPKSTSFINGILQA 295 Query: 153 V 153 + Sbjct: 296 I 296 >gi|144575303|gb|AAZ53536.2| hypothetical protein MHP7448_0162 [Mycoplasma hyopneumoniae 7448] Length = 216 Score = 33.9 bits (76), Expect = 8.8, Method: Compositional matrix adjust. Identities = 28/77 (36%), Positives = 40/77 (51%), Gaps = 5/77 (6%) Query: 86 LISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDF-FYGD-EP 143 +I+ L W++ R+ ++ SIL G EL VP ++ +E V I F GD E Sbjct: 138 VINLQLKSNWNWERILPLIRSILLVGAAELF---FVPSRIVFNEAVEITKIFSIAGDNEF 194 Query: 144 KFINAVLDKVSRKEEIK 160 F+NAVL K+ EIK Sbjct: 195 CFVNAVLQKIYNYYEIK 211 >gi|325971258|ref|YP_004247449.1| NusB antitermination factor [Spirochaeta sp. Buddy] gi|324026496|gb|ADY13255.1| NusB antitermination factor [Spirochaeta sp. Buddy] Length = 152 Score = 33.9 bits (76), Expect = 8.9, Method: Compositional matrix adjust. Identities = 37/141 (26%), Positives = 66/141 (46%), Gaps = 7/141 (4%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 R AR A+Q LY +D E+ + F +TE + + + V + + ++ G Sbjct: 4 RHKARELALQTLYAMDF----NKELDVLHIPAIFSGNTEEEHDQLEEEVKI-YGMYLVRG 58 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135 ++ ID LIS + R+D++ +ILR V + ++ +II E V ++ Sbjct: 59 TLENLFEIDELISKYSLNR-PIERIDIVDRNILRMSVF-CLRFGNIHPHIIIDEAVKLSQ 116 Query: 136 DFFYGDEPKFINAVLDKVSRK 156 DF KFIN +LD + ++ Sbjct: 117 DFSTEVNYKFINGILDTMQKQ 137 >gi|72080501|ref|YP_287559.1| hypothetical protein MHP7448_0162 [Mycoplasma hyopneumoniae 7448] Length = 219 Score = 33.9 bits (76), Expect = 8.9, Method: Compositional matrix adjust. Identities = 28/77 (36%), Positives = 40/77 (51%), Gaps = 5/77 (6%) Query: 86 LISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDF-FYGD-EP 143 +I+ L W++ R+ ++ SIL G EL VP ++ +E V I F GD E Sbjct: 141 VINLQLKSNWNWERILPLIRSILLVGAAEL---FFVPSRIVFNEAVEITKIFSIAGDNEF 197 Query: 144 KFINAVLDKVSRKEEIK 160 F+NAVL K+ EIK Sbjct: 198 CFVNAVLQKIYNYYEIK 214 >gi|71893514|ref|YP_278960.1| hypothetical protein MHJ_0158 [Mycoplasma hyopneumoniae J] Length = 199 Score = 33.5 bits (75), Expect = 9.2, Method: Compositional matrix adjust. Identities = 28/77 (36%), Positives = 40/77 (51%), Gaps = 5/77 (6%) Query: 86 LISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDF-FYGD-EP 143 +I+ L W++ R+ ++ SIL G EL VP ++ +E V I F GD E Sbjct: 121 VINLQLKSNWNWERILPLIRSILLVGAAELF---FVPSRIVFNEAVEITKIFSIAGDNEF 177 Query: 144 KFINAVLDKVSRKEEIK 160 F+NAVL K+ EIK Sbjct: 178 CFVNAVLQKIYNYYEIK 194 >gi|312601103|gb|ADQ90358.1| hypothetical protein MHP168_141 [Mycoplasma hyopneumoniae 168] Length = 231 Score = 33.5 bits (75), Expect = 9.5, Method: Compositional matrix adjust. Identities = 27/77 (35%), Positives = 39/77 (50%), Gaps = 5/77 (6%) Query: 86 LISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDF-FYGDEPK 144 +I+ L W++ R+ ++ SIL G EL VP ++ +E V I F GD Sbjct: 153 VINLQLKSNWNWERILPLIRSILLVGAAELF---FVPSRIVFNEAVEITKIFSIAGDNEF 209 Query: 145 -FINAVLDKVSRKEEIK 160 F+NAVL K+ EIK Sbjct: 210 CFVNAVLQKIYNYYEIK 226 >gi|255325951|ref|ZP_05367041.1| ribosomal RNA small subunit methyltransferase B [Rothia mucilaginosa ATCC 25296] gi|255296966|gb|EET76293.1| ribosomal RNA small subunit methyltransferase B [Rothia mucilaginosa ATCC 25296] Length = 659 Score = 33.5 bits (75), Expect = 9.9, Method: Composition-based stats. Identities = 23/94 (24%), Positives = 43/94 (45%), Gaps = 3/94 (3%) Query: 63 HVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVP 122 H D + + +G + + D ++S C+ ++ +LR GV +L+ VP Sbjct: 198 HRDAGFATELTYGTLRHQGTYDAILSRCVDR--PIEKVGTTTLIVLRMGVHQLLNMR-VP 254 Query: 123 VEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRK 156 +++ V +A + FINAVL +VS + Sbjct: 255 AHAALNQSVSLAREKIGAGPASFINAVLRRVSER 288 >gi|237756907|ref|ZP_04585380.1| transcription termination factor [Sulfurihydrogenibium yellowstonense SS-5] gi|237690928|gb|EEP60063.1| transcription termination factor [Sulfurihydrogenibium yellowstonense SS-5] Length = 169 Score = 33.5 bits (75), Expect = 10.0, Method: Compositional matrix adjust. Identities = 38/163 (23%), Positives = 71/163 (43%), Gaps = 24/163 (14%) Query: 19 ARLAAVQALYQIDIIGCSTTEIISEY-ETYRFCADTELDVESVYLHVDLEWFRVIIHGVM 77 AR +++ L+ D ++ E+ T +F ++ + E+ +I+ Sbjct: 20 ARDLSMRVLFAYDFRKEDLFNVLEEFLNTKKFPSEIK------------EYVLKVINFYN 67 Query: 78 DRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSV--PVEVIISEYVCIAH 135 + Q +D +I S L + W F R+ I ++LR GV EL+ HS E+ E + Sbjct: 68 ENSQEVDDIIKSHL-KNWRFERIGYIERAVLRLGVSELLIIHSKEESKELKDKEIRILFL 126 Query: 136 DFF-----YGDEP---KFINAVLDKVSRKEEIKRSGCVSAITQ 170 D Y + KF+N +L K++++ E + +TQ Sbjct: 127 DLLDLVECYTNSKLSVKFVNGILGKINKELEQNENSIHIGLTQ 169 Searching..................................................done Results from round 2 >gi|254780345|ref|YP_003064758.1| transcription antitermination protein NusB [Candidatus Liberibacter asiaticus str. psy62] gi|254040022|gb|ACT56818.1| transcription antitermination protein NusB [Candidatus Liberibacter asiaticus str. psy62] Length = 170 Score = 245 bits (627), Expect = 1e-63, Method: Composition-based stats. Identities = 170/170 (100%), Positives = 170/170 (100%) Query: 1 MTIQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESV 60 MTIQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESV Sbjct: 1 MTIQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESV 60 Query: 61 YLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHS 120 YLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHS Sbjct: 61 YLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHS 120 Query: 121 VPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRSGCVSAITQ 170 VPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRSGCVSAITQ Sbjct: 121 VPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRSGCVSAITQ 170 >gi|315122231|ref|YP_004062720.1| transcription antitermination protein NusB [Candidatus Liberibacter solanacearum CLso-ZC1] gi|313495633|gb|ADR52232.1| transcription antitermination protein NusB [Candidatus Liberibacter solanacearum CLso-ZC1] Length = 170 Score = 219 bits (560), Expect = 7e-56, Method: Composition-based stats. Identities = 121/170 (71%), Positives = 143/170 (84%) Query: 1 MTIQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESV 60 MTIQDNK +KL+ RRGIAR++AVQALYQIDI+GCS ++ISEYE +RFCAD ++D +++ Sbjct: 1 MTIQDNKTTVKLALRRGIARISAVQALYQIDIVGCSLVDVISEYEMHRFCADKDIDEDNI 60 Query: 61 YLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHS 120 Y VDLEWF I+HGV+ K+ +D LISSCLTEKWSFSRLD+ILC+ILRAGV ELIECHS Sbjct: 61 YSQVDLEWFHTIMHGVVKNKELVDSLISSCLTEKWSFSRLDLILCAILRAGVFELIECHS 120 Query: 121 VPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRSGCVSAITQ 170 VPV VIISEYVCIAHDF YGDEPKF+NAVLDKVSR E++ SAI Q Sbjct: 121 VPVRVIISEYVCIAHDFLYGDEPKFVNAVLDKVSRTPEVQSKRSDSAIIQ 170 >gi|222148209|ref|YP_002549166.1| transcription antitermination protein NusB [Agrobacterium vitis S4] gi|254772608|sp|B9JV80|NUSB_AGRVS RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|221735197|gb|ACM36160.1| transcription antitermination factor NusB [Agrobacterium vitis S4] Length = 160 Score = 196 bits (500), Expect = 7e-49, Method: Composition-based stats. Identities = 74/160 (46%), Positives = 107/160 (66%), Gaps = 3/160 (1%) Query: 1 MTIQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESV 60 MT ++NK +K +++RG ARLAAVQALYQ+DI G E+++EYET+R + + + Sbjct: 1 MTTENNKPPVKTANQRGAARLAAVQALYQMDIGGTGVLEVVAEYETHRLGQEIDGE---T 57 Query: 61 YLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHS 120 YL D WFR I+ GV+ + ID LI L + WS +R+D + +ILRAG EL+E Sbjct: 58 YLKADASWFRSIVAGVVRDQTKIDPLIRQALQDDWSLARVDSTVRAILRAGTFELLERKD 117 Query: 121 VPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIK 160 VP+ VI++EYV IAH FF DEPK +NAVLD+++++ + Sbjct: 118 VPIAVIVTEYVEIAHAFFQEDEPKLVNAVLDRIAKQVRVP 157 >gi|222085516|ref|YP_002544046.1| transcription antitermination factor NusB [Agrobacterium radiobacter K84] gi|254772607|sp|B9JCY3|NUSB_AGRRK RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|221722964|gb|ACM26120.1| transcription antitermination factor NusB [Agrobacterium radiobacter K84] Length = 160 Score = 196 bits (500), Expect = 7e-49, Method: Composition-based stats. Identities = 74/156 (47%), Positives = 106/156 (67%), Gaps = 3/156 (1%) Query: 1 MTIQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESV 60 M+ QDN++ K +++RG ARLAAVQALYQ+DI G E+++EYE +R + + D Sbjct: 1 MSNQDNERPAKTANQRGAARLAAVQALYQMDIGGTGVLEVVAEYEAHRLGQELDGD---T 57 Query: 61 YLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHS 120 YL D WFR I+ GV+ + +D LI S L + W+ SRLD + +ILRAG E+++ Sbjct: 58 YLKADASWFRSIVSGVVREQTRLDPLIGSALQDDWALSRLDSTVRAILRAGTFEILDRKD 117 Query: 121 VPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRK 156 VPV VI++EYV IAH FF DEPK +NAVLD+++++ Sbjct: 118 VPVAVIVTEYVEIAHAFFDDDEPKLVNAVLDRIAKQ 153 >gi|227821538|ref|YP_002825508.1| transcription antitermination protein NusB [Sinorhizobium fredii NGR234] gi|254772651|sp|C3M9I9|NUSB_RHISN RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|227340537|gb|ACP24755.1| N utilization substance protein B [Sinorhizobium fredii NGR234] Length = 160 Score = 194 bits (495), Expect = 3e-48, Method: Composition-based stats. Identities = 72/161 (44%), Positives = 106/161 (65%), Gaps = 3/161 (1%) Query: 1 MTIQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESV 60 MT + + LK +++RG ARLAAVQALYQ++I G EI++E+E +R + + + Sbjct: 1 MTNTPSDQPLKQANQRGAARLAAVQALYQMEIGGTGVLEIVAEFEAHRLGQELDGE---T 57 Query: 61 YLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHS 120 YL D WFR I+ GV+ ++ +D LI S L + W+ SRLD + +ILRAG EL+E Sbjct: 58 YLKADASWFRSIVSGVVRDQRKLDPLIGSALQDDWALSRLDSTVRAILRAGTFELLERKD 117 Query: 121 VPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKR 161 VPV VI++EYV IA FF +EPK +NAVLD+++++ +R Sbjct: 118 VPVAVIVTEYVEIAKAFFEDEEPKLVNAVLDRIAKQIRGER 158 >gi|90419413|ref|ZP_01227323.1| putative transcription termination protein NusB [Aurantimonas manganoxydans SI85-9A1] gi|90336350|gb|EAS50091.1| putative transcription termination protein NusB [Aurantimonas manganoxydans SI85-9A1] Length = 177 Score = 191 bits (487), Expect = 2e-47, Method: Composition-based stats. Identities = 67/165 (40%), Positives = 101/165 (61%), Gaps = 4/165 (2%) Query: 1 MTIQDNK-KDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVES 59 M+ D + + +K +++RG ARLAAVQALYQ+++ G + E ++EYE +R ++ + + Sbjct: 1 MSSSDPQARPVKQANKRGAARLAAVQALYQMEVGGTALLETVAEYENFRLGSEIDGE--- 57 Query: 60 VYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECH 119 Y D WFR ++ GV+ + ID I + L W SR+D L +ILRAG EL Sbjct: 58 TYREADAGWFRDVVSGVVRSQTEIDPKIHASLPTDWPLSRIDTTLRAILRAGTYELSNRK 117 Query: 120 SVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRSGC 164 VPV VI+SEY+ +A F+ GDEP +NAVLD+V+R ++ G Sbjct: 118 DVPVAVIVSEYIDVAKAFYTGDEPGLVNAVLDRVARSVRAEKPGE 162 >gi|150396046|ref|YP_001326513.1| transcription antitermination protein NusB [Sinorhizobium medicae WSM419] gi|166215721|sp|A6U7P8|NUSB_SINMW RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|150027561|gb|ABR59678.1| NusB antitermination factor [Sinorhizobium medicae WSM419] Length = 160 Score = 190 bits (484), Expect = 5e-47, Method: Composition-based stats. Identities = 72/161 (44%), Positives = 105/161 (65%), Gaps = 3/161 (1%) Query: 1 MTIQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESV 60 MT + + LK ++RG ARLAAVQALYQ+D+ G EI++EYE +R + + D Sbjct: 1 MTNTPSDQPLKQVNQRGAARLAAVQALYQMDVGGTGVLEIVAEYEEHRLGKELDGD---T 57 Query: 61 YLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHS 120 YL D WFR I+ GV+ ++ +D LI S L + W+ SRLD + +ILRAG E++E Sbjct: 58 YLRADASWFRSIVAGVVRDQRKLDPLIGSALQDDWALSRLDSTVRAILRAGTFEILERKD 117 Query: 121 VPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKR 161 VPV VI++EYV IA FF +EPK +NAVLD+++++ ++ Sbjct: 118 VPVPVIVTEYVEIAKAFFQDEEPKLVNAVLDRIAKQVRGEQ 158 >gi|15964969|ref|NP_385322.1| transcription antitermination protein NusB [Sinorhizobium meliloti 1021] gi|307301040|ref|ZP_07580809.1| NusB antitermination factor [Sinorhizobium meliloti BL225C] gi|307317774|ref|ZP_07597212.1| NusB antitermination factor [Sinorhizobium meliloti AK83] gi|22095960|sp|Q92QT9|NUSB_RHIME RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|15074148|emb|CAC45795.1| Putative N utilization substance protein B [Sinorhizobium meliloti 1021] gi|306896536|gb|EFN27284.1| NusB antitermination factor [Sinorhizobium meliloti AK83] gi|306903995|gb|EFN34581.1| NusB antitermination factor [Sinorhizobium meliloti BL225C] Length = 160 Score = 190 bits (483), Expect = 6e-47, Method: Composition-based stats. Identities = 72/156 (46%), Positives = 103/156 (66%), Gaps = 3/156 (1%) Query: 1 MTIQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESV 60 MT + + LK ++RG ARLAAVQALYQ+D+ G EI++EYE +R + + D Sbjct: 1 MTNTPSDQPLKQVNQRGAARLAAVQALYQMDVGGTGVLEIVAEYEEHRLGKELDGD---T 57 Query: 61 YLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHS 120 YL D WFR I+ GV+ ++ +D LI S L + W+ SRLD + +ILRAG E++E Sbjct: 58 YLRADASWFRSIVAGVVRDQRKLDPLIGSALQDDWALSRLDSTVRAILRAGTFEILERKD 117 Query: 121 VPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRK 156 VPV VI++EYV IA FF +EPK +NAVLD+++++ Sbjct: 118 VPVPVIVTEYVEIAKAFFQDEEPKLVNAVLDRIAKQ 153 >gi|319784157|ref|YP_004143633.1| transcription antitermination factor NusB [Mesorhizobium ciceri biovar biserrulae WSM1271] gi|317170045|gb|ADV13583.1| transcription antitermination factor NusB [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 166 Score = 189 bits (482), Expect = 9e-47, Method: Composition-based stats. Identities = 74/164 (45%), Positives = 106/164 (64%), Gaps = 3/164 (1%) Query: 4 QDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLH 63 + ++ +++RG ARLAAVQALYQ+D+ G EI +EYE +R + + ++Y Sbjct: 6 SPGQPAMRHANKRGAARLAAVQALYQMDVAGSGVFEITAEYEAFRLGKEVDG---ALYRE 62 Query: 64 VDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPV 123 D +WFR I+ GV++ ++ ID +I LTE W SRLD L +ILRAGV EL++ VPV Sbjct: 63 ADAQWFRAILAGVVENQKTIDPIIRQALTEDWPLSRLDSTLRAILRAGVYELMKREDVPV 122 Query: 124 EVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRSGCVSA 167 VI+SEYV IA F+ DEPK +NAVLD+VSR+ + G ++ Sbjct: 123 AVIVSEYVDIAKAFYEEDEPKLVNAVLDRVSRRVRGEGRGKDAS 166 >gi|304391939|ref|ZP_07373881.1| transcription antitermination factor NusB [Ahrensia sp. R2A130] gi|303296168|gb|EFL90526.1| transcription antitermination factor NusB [Ahrensia sp. R2A130] Length = 186 Score = 189 bits (480), Expect = 1e-46, Method: Composition-based stats. Identities = 68/162 (41%), Positives = 100/162 (61%), Gaps = 6/162 (3%) Query: 6 NKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVD 65 ++ +K +++RG ARL+AVQALYQ+DI G TE+++EYE +R + + + YL D Sbjct: 4 KERAMKPANKRGSARLSAVQALYQMDIGGAGLTEVVAEYENFRLGHEIDGE---TYLDAD 60 Query: 66 LEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEV 125 WFR I+ GV+ ++ ID +I LT+ W SR+D L ++LRA V ELI V V Sbjct: 61 PSWFRGIVGGVVRDQKKIDPVIHDALTKDWPLSRIDSTLRAVLRAAVFELINRPDVSARV 120 Query: 126 IISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRSGCVSA 167 ++SEY+ + FF DEPK +N VLDKV+R+ R G + Sbjct: 121 VVSEYIEVTKAFFESDEPKMVNGVLDKVARQL---RDGELDP 159 >gi|159184647|ref|NP_354190.2| transcription antitermination protein NusB [Agrobacterium tumefaciens str. C58] gi|22095943|sp|Q8UG69|NUSB_AGRT5 RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|159139945|gb|AAK86975.2| Putative transcription antitermination protein NusB [Agrobacterium tumefaciens str. C58] Length = 165 Score = 187 bits (476), Expect = 4e-46, Method: Composition-based stats. Identities = 73/160 (45%), Positives = 103/160 (64%), Gaps = 5/160 (3%) Query: 4 QDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLH 63 + + +K +++RG ARLAAVQALYQ+D+ G E+++EYE +R + + D YL Sbjct: 9 EPRQPSVKPANQRGAARLAAVQALYQMDVGGTGVMEVVAEYEAHRLGQEVDGD---TYLK 65 Query: 64 VDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPV 123 D WFR I+ GV+ + ID L+ S L E W SRLD + +ILRAG E++E VPV Sbjct: 66 ADPSWFRSIVSGVVRDQTKIDPLVRSALLEDWPLSRLDATVRAILRAGTFEILERKDVPV 125 Query: 124 EVIISEYVCIAHDFFYGDEPKFINAVLDKVSRK--EEIKR 161 VI++EYV IA FF DEPK +NAVLD+++++ E KR Sbjct: 126 AVIVTEYVEIARAFFEHDEPKLVNAVLDRIAKQVRGEAKR 165 >gi|319898989|ref|YP_004159082.1| N utilization substance protein B [Bartonella clarridgeiae 73] gi|319402953|emb|CBI76504.1| N utilization substance protein B [Bartonella clarridgeiae 73] Length = 156 Score = 187 bits (476), Expect = 4e-46, Method: Composition-based stats. Identities = 77/156 (49%), Positives = 105/156 (67%), Gaps = 3/156 (1%) Query: 1 MTIQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESV 60 M +K L+L+++RG ARLAAVQALYQ+DIIG EII+EYE YR + + D Sbjct: 1 MAYIKSKDSLRLANKRGAARLAAVQALYQMDIIGTGVIEIIAEYEAYRLGKNIDGDQ--- 57 Query: 61 YLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHS 120 YL D +WF II GV+ ++ +D ++ L+E+W+ SRLD L +ILRAG+ ELI Sbjct: 58 YLDADFQWFCSIIVGVVKDQKQLDPMLHQKLSEEWALSRLDSTLRAILRAGLWELINRKD 117 Query: 121 VPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRK 156 VPV VII+EYV IA FF DEP+ +NAVLD ++++ Sbjct: 118 VPVAVIINEYVDIAKAFFESDEPRLVNAVLDNIAKE 153 >gi|327191850|gb|EGE58847.1| transcription antitermination protein B [Rhizobium etli CNPAF512] Length = 160 Score = 187 bits (476), Expect = 5e-46, Method: Composition-based stats. Identities = 70/162 (43%), Positives = 107/162 (66%), Gaps = 3/162 (1%) Query: 1 MTIQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESV 60 M+ + ++ +K +++RG ARLAAVQALYQ+D+ G EI++EYE +R + + + Sbjct: 1 MSDEKTERPVKTANQRGAARLAAVQALYQMDVGGTGVLEIVAEYEAHRLGQEIDG---AT 57 Query: 61 YLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHS 120 YL D WFR I+ GV+ + +D LI++ L + W+ SRLD + +ILRAGV EL++ Sbjct: 58 YLKADAGWFRSIVSGVVRDQVRLDPLIAAALQDDWALSRLDSTVRAILRAGVFELLDRKD 117 Query: 121 VPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRS 162 VPV VI++EYV IA FF DEPK +NAVLD+++++ + Sbjct: 118 VPVAVIVTEYVEIAQAFFDDDEPKLVNAVLDRIAKQVRGEAK 159 >gi|190891211|ref|YP_001977753.1| transcription antitermination protein B [Rhizobium etli CIAT 652] gi|218514737|ref|ZP_03511577.1| transcription antitermination protein NusB [Rhizobium etli 8C-3] gi|238692516|sp|B3PVD4|NUSB_RHIE6 RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|190696490|gb|ACE90575.1| transcription antitermination protein B [Rhizobium etli CIAT 652] Length = 160 Score = 187 bits (475), Expect = 5e-46, Method: Composition-based stats. Identities = 70/162 (43%), Positives = 107/162 (66%), Gaps = 3/162 (1%) Query: 1 MTIQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESV 60 M+ + ++ +K +++RG ARLAAVQALYQ+D+ G EI++EYE +R + + + Sbjct: 1 MSDEKTERPVKTANQRGAARLAAVQALYQMDVGGTGVLEIVAEYEAHRLGQEIDG---AT 57 Query: 61 YLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHS 120 YL D WFR I+ GV+ + +D LI++ L + W+ SRLD + +ILRAGV EL++ Sbjct: 58 YLKADAGWFRSIVSGVVRDQVRLDPLIAAALQDDWALSRLDSTVRAILRAGVFELLDRKD 117 Query: 121 VPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRS 162 VPV VI++EYV IA FF DEPK +NAVLD+++++ + Sbjct: 118 VPVAVIVTEYVEIAQAFFDDDEPKLVNAVLDRIAKQVRSEAK 159 >gi|254718887|ref|ZP_05180698.1| transcription antitermination protein NusB [Brucella sp. 83/13] gi|265983873|ref|ZP_06096608.1| conserved hypothetical protein [Brucella sp. 83/13] gi|306838197|ref|ZP_07471051.1| transcription antitermination factor NusB [Brucella sp. NF 2653] gi|264662465|gb|EEZ32726.1| conserved hypothetical protein [Brucella sp. 83/13] gi|306406706|gb|EFM62931.1| transcription antitermination factor NusB [Brucella sp. NF 2653] Length = 171 Score = 187 bits (475), Expect = 5e-46, Method: Composition-based stats. Identities = 68/158 (43%), Positives = 97/158 (61%), Gaps = 7/158 (4%) Query: 1 MTIQDNKKD----LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELD 56 M + + +++RG+ARLAAVQALYQ+D+ G E+++EYE +R + + Sbjct: 1 MNSTPEGRPTPNLPRTANKRGVARLAAVQALYQMDVAGTGVMEVVAEYEAFRLGKEVDG- 59 Query: 57 VESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELI 116 + YL D +WFR I+ GV++ + +D +I LTE W SRLD L +ILRAG EL Sbjct: 60 --TQYLDADPQWFRAIVAGVVEDQLKLDPMIHQALTEGWPLSRLDSTLRAILRAGAWELK 117 Query: 117 ECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVS 154 VP VI+SEYV IA F+ DEPK +NAVLD+++ Sbjct: 118 ARKDVPTAVIVSEYVDIAKAFYTEDEPKLVNAVLDRLA 155 >gi|325292546|ref|YP_004278410.1| transcription antitermination protein NusB [Agrobacterium sp. H13-3] gi|325060399|gb|ADY64090.1| transcription antitermination protein NusB [Agrobacterium sp. H13-3] Length = 165 Score = 187 bits (475), Expect = 6e-46, Method: Composition-based stats. Identities = 73/160 (45%), Positives = 103/160 (64%), Gaps = 5/160 (3%) Query: 4 QDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLH 63 + + +K +++RG ARLAAVQALYQ+D+ G E+++EYE +R + + D YL Sbjct: 9 EPRQPSVKPANQRGAARLAAVQALYQMDVGGTGVMEVVAEYEAHRLGQEVDGD---TYLK 65 Query: 64 VDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPV 123 D WFR I+ GV+ + ID L+ S L E W SRLD + +ILRAG E++E VPV Sbjct: 66 ADPSWFRSIVSGVVRDQTKIDPLVRSALLEDWPLSRLDATVRAILRAGAFEILERKDVPV 125 Query: 124 EVIISEYVCIAHDFFYGDEPKFINAVLDKVSRK--EEIKR 161 VI++EYV IA FF DEPK +NAVLD+++++ E KR Sbjct: 126 AVIVTEYVEIARAFFEHDEPKLVNAVLDRIAKQVRGEAKR 165 >gi|260466838|ref|ZP_05813022.1| NusB antitermination factor [Mesorhizobium opportunistum WSM2075] gi|259029340|gb|EEW30632.1| NusB antitermination factor [Mesorhizobium opportunistum WSM2075] Length = 166 Score = 186 bits (474), Expect = 7e-46, Method: Composition-based stats. Identities = 74/164 (45%), Positives = 106/164 (64%), Gaps = 3/164 (1%) Query: 4 QDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLH 63 + ++ +++RG ARLAAVQALYQ+D+ G EI +EYE +R + + ++Y Sbjct: 6 SPGQPAVRHANKRGAARLAAVQALYQMDVAGSGVFEITAEYEAFRLGKEVDG---ALYRE 62 Query: 64 VDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPV 123 D +WFR I+ GV++ ++ ID +I LTE W SRLD L +ILRAGV EL++ VPV Sbjct: 63 ADAQWFRAILTGVVEDQKTIDPIIRQSLTEDWPLSRLDSTLRAILRAGVYELMKREDVPV 122 Query: 124 EVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRSGCVSA 167 VI+SEYV IA F+ DEPK +NAVLD+VSR+ + G ++ Sbjct: 123 AVIVSEYVDIAKAFYEEDEPKLVNAVLDRVSRRVRGEGRGKDAS 166 >gi|163759209|ref|ZP_02166295.1| transcription antitermination protein NusB [Hoeflea phototrophica DFL-43] gi|162283613|gb|EDQ33898.1| transcription antitermination protein NusB [Hoeflea phototrophica DFL-43] Length = 164 Score = 186 bits (474), Expect = 7e-46, Method: Composition-based stats. Identities = 71/161 (44%), Positives = 105/161 (65%), Gaps = 3/161 (1%) Query: 2 TIQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVY 61 T Q+ + +K +++RG ARLAAVQALYQ+DI G E+++EYE +R + + + Y Sbjct: 3 TEQNPEPAVKTANQRGAARLAAVQALYQMDIGGAGVLEVVAEYEAHRLGHEIDGEQ---Y 59 Query: 62 LHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSV 121 D WF+ ++ GV++ ++ +D +I S LTE W SRLD L +ILRAG EL V Sbjct: 60 RPADAAWFKAVVSGVVENQRALDPVIRSSLTEDWPLSRLDATLRAILRAGAWELSSKKDV 119 Query: 122 PVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRS 162 PV VI++EYV +A FF DEPK +NAVLD+++RK +++ Sbjct: 120 PVAVIVTEYVDVARAFFEEDEPKIVNAVLDRLARKYRAEQT 160 >gi|239831595|ref|ZP_04679924.1| transcription antitermination factor NusB [Ochrobactrum intermedium LMG 3301] gi|239823862|gb|EEQ95430.1| transcription antitermination factor NusB [Ochrobactrum intermedium LMG 3301] Length = 168 Score = 186 bits (473), Expect = 8e-46, Method: Composition-based stats. Identities = 67/151 (44%), Positives = 97/151 (64%), Gaps = 3/151 (1%) Query: 4 QDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLH 63 + +++++RG+ARLAAVQALYQ+D+ G E+++EYE +R + + + YL Sbjct: 8 RPTPNAPRMANKRGVARLAAVQALYQMDVAGTGVLEVVAEYEAFRLGKEVDG---TQYLD 64 Query: 64 VDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPV 123 D +WFR I+ GV+D + +D +I LTE W SRLD L +ILRAG EL VP Sbjct: 65 ADPQWFRAIVAGVVDEQLKLDPMIHQALTEDWPLSRLDSTLRAILRAGAWELQTRKDVPT 124 Query: 124 EVIISEYVCIAHDFFYGDEPKFINAVLDKVS 154 VI+SEYV IA F+ +EPK +NAVLD+++ Sbjct: 125 AVIVSEYVDIAKAFYTEEEPKLVNAVLDRLA 155 >gi|209548794|ref|YP_002280711.1| transcription antitermination protein NusB [Rhizobium leguminosarum bv. trifolii WSM2304] gi|238055477|sp|B5ZXV2|NUSB_RHILW RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|209534550|gb|ACI54485.1| NusB antitermination factor [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 160 Score = 186 bits (473), Expect = 9e-46, Method: Composition-based stats. Identities = 69/160 (43%), Positives = 104/160 (65%), Gaps = 3/160 (1%) Query: 1 MTIQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESV 60 M ++ +K +++RG ARLAAVQALYQ+D+ G EI++EYE +R + + + Sbjct: 1 MNDDKTERPVKTANQRGAARLAAVQALYQMDVGGTGVLEIVAEYEAHRLGQELDG---AT 57 Query: 61 YLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHS 120 YL D WFR I+ GV+ + +D LI++ L + W+ SRLD + +ILRAGV E+ + Sbjct: 58 YLKADAGWFRSIVSGVVRDQTRLDPLIAAALQDDWALSRLDSTVRAILRAGVFEITDRKD 117 Query: 121 VPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIK 160 VPV VI++EYV IA FF DEPK +NAVLD+++++ + Sbjct: 118 VPVAVIVTEYVEIAQAFFDDDEPKLVNAVLDRIAKQVRGE 157 >gi|116251399|ref|YP_767237.1| transcription antitermination protein NusB [Rhizobium leguminosarum bv. viciae 3841] gi|119390806|sp|Q1MIT2|NUSB_RHIL3 RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|115256047|emb|CAK07128.1| putative N utilization substance protein B [Rhizobium leguminosarum bv. viciae 3841] Length = 160 Score = 186 bits (473), Expect = 1e-45, Method: Composition-based stats. Identities = 69/162 (42%), Positives = 104/162 (64%), Gaps = 3/162 (1%) Query: 1 MTIQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESV 60 M ++ +K +++RG ARLAAVQALYQ+D+ G EI++EYE +R + + + Sbjct: 1 MNDDKTERPVKTANQRGAARLAAVQALYQMDVGGTGVLEIVAEYEAHRLGQEIDGE---T 57 Query: 61 YLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHS 120 YL D WFR I+ GV+ + +D LI++ L + W+ SRLD + +ILRAGV E+ + Sbjct: 58 YLKADAAWFRSIVSGVVRDQVRLDPLIAAALQDDWALSRLDSTVRAILRAGVFEITDRKD 117 Query: 121 VPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRS 162 VPV VI++EYV IA FF DEPK +NAVLD+++++ + Sbjct: 118 VPVAVIVTEYVEIAQAFFDDDEPKLVNAVLDRIAKQVRGEPK 159 >gi|86357164|ref|YP_469056.1| transcription antitermination protein NusB [Rhizobium etli CFN 42] gi|119390805|sp|Q2KA07|NUSB_RHIEC RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|86281266|gb|ABC90329.1| transcription antitermination protein B [Rhizobium etli CFN 42] Length = 160 Score = 186 bits (473), Expect = 1e-45, Method: Composition-based stats. Identities = 70/162 (43%), Positives = 104/162 (64%), Gaps = 3/162 (1%) Query: 1 MTIQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESV 60 M ++ +K +++RG ARLAAVQALYQ+D+ G EI++EYE +R + + + Sbjct: 1 MNDDKTERPVKTANQRGAARLAAVQALYQMDVGGTGVLEIVAEYEAHRLGQEIDG---AT 57 Query: 61 YLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHS 120 YL D WFR I+ GV+ + +D LI+ L + W+ SRLD + +ILRAGV EL++ Sbjct: 58 YLKADAGWFRSIVSGVVRDQVRLDPLIAVALQDDWALSRLDSTVRAILRAGVFELLDRKD 117 Query: 121 VPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRS 162 VPV VI++EYV IA FF DEPK +NAVLD+++++ + Sbjct: 118 VPVAVIVTEYVEIARAFFDDDEPKLVNAVLDRIAKQVRGEAK 159 >gi|306843714|ref|ZP_07476314.1| transcription antitermination factor NusB [Brucella sp. BO1] gi|306276024|gb|EFM57733.1| transcription antitermination factor NusB [Brucella sp. BO1] Length = 171 Score = 185 bits (471), Expect = 1e-45, Method: Composition-based stats. Identities = 68/158 (43%), Positives = 97/158 (61%), Gaps = 7/158 (4%) Query: 1 MTIQDNKKD----LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELD 56 M + + +++RG+ARLAAVQALYQ+D+ G E+++EYE +R + + Sbjct: 1 MNSTPEGRPTPNLPRTANKRGVARLAAVQALYQMDVAGTGVMEVVAEYEAFRLGKEVDG- 59 Query: 57 VESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELI 116 + YL D +WFR I+ GV++ + +D +I LTE W SRLD L +ILRAG EL Sbjct: 60 --TQYLDADPQWFRAIVAGVVEDQLKLDPMIHQALTEDWPLSRLDSTLRAILRAGAWELK 117 Query: 117 ECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVS 154 VP VI+SEYV IA F+ DEPK +NAVLD+++ Sbjct: 118 ARKDVPTAVIVSEYVDIAKAFYTEDEPKLVNAVLDRLA 155 >gi|241204015|ref|YP_002975111.1| transcription antitermination protein NusB [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240857905|gb|ACS55572.1| NusB antitermination factor [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 160 Score = 185 bits (471), Expect = 2e-45, Method: Composition-based stats. Identities = 69/162 (42%), Positives = 105/162 (64%), Gaps = 3/162 (1%) Query: 1 MTIQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESV 60 M ++ +K +++RG ARLAAVQALYQ+D+ G EI++EYE +R + + + Sbjct: 1 MNDDKTERPVKTANQRGAARLAAVQALYQMDVGGTGVLEIVAEYEAHRLGQELDG---AT 57 Query: 61 YLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHS 120 YL D+ WFR I+ GV+ + +D LI++ L + W+ SRLD + +ILRAGV E+ + Sbjct: 58 YLKADVAWFRSIVSGVVRDQVRLDPLIAAALQDDWALSRLDSTVRAILRAGVFEITDRKD 117 Query: 121 VPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRS 162 VPV VI++EYV IA FF DEPK +NAVLD+++++ + Sbjct: 118 VPVAVIVTEYVEIAQAFFDDDEPKLVNAVLDRIAKQVRGEAK 159 >gi|163868463|ref|YP_001609672.1| transcription antitermination protein NusB [Bartonella tribocorum CIP 105476] gi|189035879|sp|A9IVB9|NUSB_BART1 RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|161018119|emb|CAK01677.1| N utilization substance protein B [Bartonella tribocorum CIP 105476] Length = 156 Score = 184 bits (469), Expect = 3e-45, Method: Composition-based stats. Identities = 74/159 (46%), Positives = 102/159 (64%), Gaps = 3/159 (1%) Query: 1 MTIQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESV 60 M ++ + +++RG ARLAAVQALYQ+DI+G E +EYE YR D + D Sbjct: 1 MADIKSRHFPRSANKRGAARLAAVQALYQMDIVGSGVMETAAEYEAYRLGKDIDGDQ--- 57 Query: 61 YLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHS 120 YL D +WF II GV+ ++ +D L+ L+ +WS SRLD IL +ILRA + ELI Sbjct: 58 YLDADFQWFLAIITGVVQDQKQLDPLLHQQLSAEWSLSRLDSILRAILRAALWELINRKD 117 Query: 121 VPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEI 159 VPV V+++EYV IA FF GDEPK +NAVLD +++K + Sbjct: 118 VPVAVVVNEYVDIAKAFFEGDEPKLVNAVLDSMAKKIRL 156 >gi|240850687|ref|YP_002972087.1| transcription antitermination protein NusB [Bartonella grahamii as4aup] gi|240267810|gb|ACS51398.1| transcription antitermination protein NusB [Bartonella grahamii as4aup] Length = 156 Score = 184 bits (469), Expect = 3e-45, Method: Composition-based stats. Identities = 75/159 (47%), Positives = 103/159 (64%), Gaps = 3/159 (1%) Query: 1 MTIQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESV 60 M ++ + +++RG ARLAAVQALYQ+DI+G E +EYE YR D + D Sbjct: 1 MADIKSRHFPRSANKRGAARLAAVQALYQMDIVGSGVMETAAEYEAYRLGKDIDGDQ--- 57 Query: 61 YLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHS 120 YL D +WF II GV+ ++ +D L+ L+ +WS SRLD IL +ILRAG+ ELI Sbjct: 58 YLEADFQWFLAIITGVVKDQKQLDPLLHQQLSAEWSLSRLDSILRAILRAGLWELINRKD 117 Query: 121 VPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEI 159 VPV V+++EYV IA FF GDEPK +NAVLD +++K + Sbjct: 118 VPVAVVMNEYVDIAKAFFEGDEPKLVNAVLDSMAKKVRL 156 >gi|118587988|ref|ZP_01545398.1| transcription antitermination protein NusB [Stappia aggregata IAM 12614] gi|118439610|gb|EAV46241.1| transcription antitermination protein NusB [Stappia aggregata IAM 12614] Length = 173 Score = 184 bits (469), Expect = 3e-45, Method: Composition-based stats. Identities = 63/169 (37%), Positives = 101/169 (59%), Gaps = 9/169 (5%) Query: 2 TIQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVY 61 + K ++ +++RG+ARLAAVQALYQ+D+ G T ++SE+ +R + + + Y Sbjct: 7 PEKPAGKTVRPANKRGVARLAAVQALYQMDVGGAPLTSVVSEFTAFRLGKEIDGEQ---Y 63 Query: 62 LHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSV 121 D +WF+ I+ GV++ ++ +D I + L E W R+D +L +ILR+G EL+ V Sbjct: 64 READEQWFKQILAGVVEDQKFLDPYIHTALAEDWPLKRIDSLLRAILRSGSYELLRRKDV 123 Query: 122 PVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRK------EEIKRSGC 164 P +VIISEY+ +A FF DEP +N VLD+++ + EE K G Sbjct: 124 PAKVIISEYIDVAKAFFEDDEPGLVNGVLDRLAHELRGGELEEKKTDGA 172 >gi|23501657|ref|NP_697784.1| transcription antitermination protein NusB [Brucella suis 1330] gi|148560649|ref|YP_001258749.1| transcription antitermination protein NusB [Brucella ovis ATCC 25840] gi|161618737|ref|YP_001592624.1| transcription antitermination protein NusB [Brucella canis ATCC 23365] gi|225627268|ref|ZP_03785305.1| transcription antitermination factor NusB [Brucella ceti str. Cudo] gi|254701543|ref|ZP_05163371.1| transcription antitermination protein NusB [Brucella suis bv. 5 str. 513] gi|254704092|ref|ZP_05165920.1| transcription antitermination protein NusB [Brucella suis bv. 3 str. 686] gi|254707007|ref|ZP_05168835.1| transcription antitermination protein NusB [Brucella pinnipedialis M163/99/10] gi|254709884|ref|ZP_05171695.1| transcription antitermination protein NusB [Brucella pinnipedialis B2/94] gi|254713885|ref|ZP_05175696.1| transcription antitermination protein NusB [Brucella ceti M644/93/1] gi|254717058|ref|ZP_05178869.1| transcription antitermination protein NusB [Brucella ceti M13/05/1] gi|256031377|ref|ZP_05444991.1| transcription antitermination protein NusB [Brucella pinnipedialis M292/94/1] gi|256060886|ref|ZP_05451046.1| transcription antitermination protein NusB [Brucella neotomae 5K33] gi|256159498|ref|ZP_05457266.1| transcription antitermination protein NusB [Brucella ceti M490/95/1] gi|256254784|ref|ZP_05460320.1| transcription antitermination protein NusB [Brucella ceti B1/94] gi|256369202|ref|YP_003106710.1| transcription antitermination protein NusB [Brucella microti CCM 4915] gi|260168510|ref|ZP_05755321.1| transcription antitermination protein NusB [Brucella sp. F5/99] gi|260566660|ref|ZP_05837130.1| antitermination protein NusB [Brucella suis bv. 4 str. 40] gi|261218868|ref|ZP_05933149.1| conserved hypothetical protein [Brucella ceti M13/05/1] gi|261221964|ref|ZP_05936245.1| conserved hypothetical protein [Brucella ceti B1/94] gi|261314474|ref|ZP_05953671.1| conserved hypothetical protein [Brucella pinnipedialis M163/99/10] gi|261317426|ref|ZP_05956623.1| conserved hypothetical protein [Brucella pinnipedialis B2/94] gi|261321633|ref|ZP_05960830.1| conserved hypothetical protein [Brucella ceti M644/93/1] gi|261324884|ref|ZP_05964081.1| conserved hypothetical protein [Brucella neotomae 5K33] gi|261752093|ref|ZP_05995802.1| transcription antitermination protein NusB [Brucella suis bv. 5 str. 513] gi|261754752|ref|ZP_05998461.1| conserved hypothetical protein [Brucella suis bv. 3 str. 686] gi|261757980|ref|ZP_06001689.1| antitermination protein NusB [Brucella sp. F5/99] gi|265988463|ref|ZP_06101020.1| conserved hypothetical protein [Brucella pinnipedialis M292/94/1] gi|265997927|ref|ZP_06110484.1| conserved hypothetical protein [Brucella ceti M490/95/1] gi|294852131|ref|ZP_06792804.1| transcription antitermination factor NusB [Brucella sp. NVSL 07-0026] gi|32171662|sp|Q8G1E7|NUSB_BRUSU RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|166215665|sp|A5VPV2|NUSB_BRUO2 RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|189035880|sp|A9MAF0|NUSB_BRUC2 RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|23347577|gb|AAN29699.1| N utilization substance protein B [Brucella suis 1330] gi|148371906|gb|ABQ61885.1| transcription antitermination factor NusB [Brucella ovis ATCC 25840] gi|161335548|gb|ABX61853.1| transcription antitermination factor NusB [Brucella canis ATCC 23365] gi|225617273|gb|EEH14318.1| transcription antitermination factor NusB [Brucella ceti str. Cudo] gi|255999362|gb|ACU47761.1| transcription antitermination protein NusB [Brucella microti CCM 4915] gi|260156178|gb|EEW91258.1| antitermination protein NusB [Brucella suis bv. 4 str. 40] gi|260920548|gb|EEX87201.1| conserved hypothetical protein [Brucella ceti B1/94] gi|260923957|gb|EEX90525.1| conserved hypothetical protein [Brucella ceti M13/05/1] gi|261294323|gb|EEX97819.1| conserved hypothetical protein [Brucella ceti M644/93/1] gi|261296649|gb|EEY00146.1| conserved hypothetical protein [Brucella pinnipedialis B2/94] gi|261300864|gb|EEY04361.1| conserved hypothetical protein [Brucella neotomae 5K33] gi|261303500|gb|EEY06997.1| conserved hypothetical protein [Brucella pinnipedialis M163/99/10] gi|261737964|gb|EEY25960.1| antitermination protein NusB [Brucella sp. F5/99] gi|261741846|gb|EEY29772.1| transcription antitermination protein NusB [Brucella suis bv. 5 str. 513] gi|261744505|gb|EEY32431.1| conserved hypothetical protein [Brucella suis bv. 3 str. 686] gi|262552395|gb|EEZ08385.1| conserved hypothetical protein [Brucella ceti M490/95/1] gi|264660660|gb|EEZ30921.1| conserved hypothetical protein [Brucella pinnipedialis M292/94/1] gi|294820720|gb|EFG37719.1| transcription antitermination factor NusB [Brucella sp. NVSL 07-0026] Length = 171 Score = 184 bits (469), Expect = 3e-45, Method: Composition-based stats. Identities = 67/151 (44%), Positives = 96/151 (63%), Gaps = 3/151 (1%) Query: 4 QDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLH 63 + + +++RG+ARLAAVQALYQ+D+ G E+++EYE +R + + + YL Sbjct: 8 RPTPNLPRTANKRGVARLAAVQALYQMDVAGTGVMEVVAEYEAFRLGKEVDG---TQYLD 64 Query: 64 VDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPV 123 D +WFR I+ GV++ + +D +I LTE W SRLD L +ILRAG EL VP Sbjct: 65 ADPQWFRAIVAGVVEDQLKLDPMIHQALTEDWPLSRLDSTLRAILRAGAWELKARKDVPT 124 Query: 124 EVIISEYVCIAHDFFYGDEPKFINAVLDKVS 154 VI+SEYV IA F+ DEPK +NAVLD+++ Sbjct: 125 AVIVSEYVDIAKAFYTEDEPKLVNAVLDRLA 155 >gi|218682018|ref|ZP_03529619.1| transcription antitermination protein NusB [Rhizobium etli CIAT 894] Length = 160 Score = 184 bits (467), Expect = 4e-45, Method: Composition-based stats. Identities = 69/162 (42%), Positives = 104/162 (64%), Gaps = 3/162 (1%) Query: 1 MTIQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESV 60 M ++ +K +++RG ARLAAVQALYQ+D+ G EI++EYE +R + + + Sbjct: 1 MNDDKTERPVKTANQRGAARLAAVQALYQMDVGGTGVLEIVAEYEAHRLGQELDG---AT 57 Query: 61 YLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHS 120 YL D WFR I+ GV+ + +D LI++ L + W+ SRLD + +ILRAGV E+ + Sbjct: 58 YLKADAAWFRSIVSGVVRDQVRLDPLIAAALQDDWALSRLDSTVRAILRAGVFEITDRKD 117 Query: 121 VPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRS 162 VPV VI++EYV IA FF DEPK +NAVLD+++++ + Sbjct: 118 VPVAVIVTEYVEIAQAFFEDDEPKLVNAVLDRIAKQVRGEAK 159 >gi|153009852|ref|YP_001371067.1| transcription antitermination protein NusB [Ochrobactrum anthropi ATCC 49188] gi|166215706|sp|A6X1Y4|NUSB_OCHA4 RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|151561740|gb|ABS15238.1| NusB antitermination factor [Ochrobactrum anthropi ATCC 49188] Length = 168 Score = 184 bits (467), Expect = 4e-45, Method: Composition-based stats. Identities = 68/151 (45%), Positives = 96/151 (63%), Gaps = 3/151 (1%) Query: 4 QDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLH 63 + + +++RG+ARLAAVQALYQ+D+ G E+++EYE +R + + + YL Sbjct: 8 RPTPNLPRTANKRGVARLAAVQALYQMDVAGTGVLEVVAEYEAFRLGKEVDG---TQYLD 64 Query: 64 VDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPV 123 D +WFR I+ GV+D + +D +I LTE W SRLD L +ILRAG EL VP Sbjct: 65 ADPQWFRAIVAGVVDEQLKLDPMIHQALTEDWPLSRLDSTLRAILRAGAWELQTRKDVPT 124 Query: 124 EVIISEYVCIAHDFFYGDEPKFINAVLDKVS 154 VI+SEYV IA F+ DEPK +NAVLD+++ Sbjct: 125 AVIVSEYVDIAKAFYTEDEPKLVNAVLDRLA 155 >gi|319407319|emb|CBI80960.1| N utilization substance protein B [Bartonella sp. 1-1C] Length = 156 Score = 184 bits (467), Expect = 5e-45, Method: Composition-based stats. Identities = 71/156 (45%), Positives = 104/156 (66%), Gaps = 3/156 (1%) Query: 1 MTIQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESV 60 M K L+L+++RG ARLAAVQALYQ+D++G E+I+EY+ YR D + S Sbjct: 1 MDDVKGKDFLRLANKRGAARLAAVQALYQMDMVGIGAMEVIAEYKAYRLGKDIDG---SQ 57 Query: 61 YLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHS 120 YL D +WF II GV+ ++ +D ++ L+E+W+ SRLD L +ILRAG+ ELI Sbjct: 58 YLDADFQWFCSIIVGVVRDQKQLDPMLHKQLSEEWALSRLDSTLRAILRAGLWELINRKD 117 Query: 121 VPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRK 156 VP+ VI++EY+ IA FF DEP+ +NAVLD ++++ Sbjct: 118 VPIAVILNEYIDIAKAFFDNDEPRLVNAVLDSIAKE 153 >gi|49475530|ref|YP_033571.1| transcription antitermination protein NusB [Bartonella henselae str. Houston-1] gi|81647946|sp|Q6G3K8|NUSB_BARHE RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|49238336|emb|CAF27560.1| N utilization substance protein B [Bartonella henselae str. Houston-1] Length = 158 Score = 183 bits (466), Expect = 6e-45, Method: Composition-based stats. Identities = 75/159 (47%), Positives = 105/159 (66%), Gaps = 3/159 (1%) Query: 1 MTIQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESV 60 M + K +L+++RG ARLAAVQALYQ+DI+G E +EYE YR D + D Sbjct: 1 MVDVEGKYSPRLANKRGAARLAAVQALYQMDIVGSGVMETAAEYEAYRLGKDIDGDQ--- 57 Query: 61 YLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHS 120 YL D +WF II GV+ ++ +D +++ L+ +WS SRLD IL +ILRAG+ ELI Sbjct: 58 YLDADFQWFLAIITGVVKDQKQLDPMLNQQLSAEWSLSRLDSILRAILRAGLWELINRQD 117 Query: 121 VPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEI 159 VP+ V++SEYV IA FF GDEPK +NA+LD +++K + Sbjct: 118 VPIAVVMSEYVDIAKAFFEGDEPKLVNAILDSMAKKIRL 156 >gi|62289722|ref|YP_221515.1| transcription antitermination protein NusB [Brucella abortus bv. 1 str. 9-941] gi|82699651|ref|YP_414225.1| transcription antitermination protein NusB [Brucella melitensis biovar Abortus 2308] gi|189023971|ref|YP_001934739.1| transcription antitermination protein NusB [Brucella abortus S19] gi|225852286|ref|YP_002732519.1| transcription antitermination protein NusB [Brucella melitensis ATCC 23457] gi|237815210|ref|ZP_04594208.1| transcription antitermination factor NusB [Brucella abortus str. 2308 A] gi|254689031|ref|ZP_05152285.1| transcription antitermination protein NusB [Brucella abortus bv. 6 str. 870] gi|254693514|ref|ZP_05155342.1| transcription antitermination protein NusB [Brucella abortus bv. 3 str. Tulya] gi|254697166|ref|ZP_05158994.1| transcription antitermination protein NusB [Brucella abortus bv. 2 str. 86/8/59] gi|254730062|ref|ZP_05188640.1| transcription antitermination protein NusB [Brucella abortus bv. 4 str. 292] gi|256113300|ref|ZP_05454168.1| transcription antitermination protein NusB [Brucella melitensis bv. 3 str. Ether] gi|256257281|ref|ZP_05462817.1| transcription antitermination protein NusB [Brucella abortus bv. 9 str. C68] gi|256264209|ref|ZP_05466741.1| antitermination protein NusB [Brucella melitensis bv. 2 str. 63/9] gi|260545525|ref|ZP_05821266.1| antitermination protein NusB [Brucella abortus NCTC 8038] gi|260754526|ref|ZP_05866874.1| transcription antitermination protein NusB [Brucella abortus bv. 6 str. 870] gi|260757747|ref|ZP_05870095.1| transcription antitermination protein NusB [Brucella abortus bv. 4 str. 292] gi|260761572|ref|ZP_05873915.1| transcription antitermination protein NusB [Brucella abortus bv. 2 str. 86/8/59] gi|260883554|ref|ZP_05895168.1| conserved hypothetical protein [Brucella abortus bv. 9 str. C68] gi|261213774|ref|ZP_05928055.1| transcription antitermination protein NusB [Brucella abortus bv. 3 str. Tulya] gi|265994713|ref|ZP_06107270.1| conserved hypothetical protein [Brucella melitensis bv. 3 str. Ether] gi|297248127|ref|ZP_06931845.1| transcription antitermination factor NusB [Brucella abortus bv. 5 str. B3196] gi|75496998|sp|Q57DY0|NUSB_BRUAB RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|119372280|sp|Q2YNC5|NUSB_BRUA2 RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|238689358|sp|B2S518|NUSB_BRUA1 RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|254772617|sp|C0RIA7|NUSB_BRUMB RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|62195854|gb|AAX74154.1| NusB, N utilization substance protein B [Brucella abortus bv. 1 str. 9-941] gi|82615752|emb|CAJ10748.1| Antitermination protein NusB [Brucella melitensis biovar Abortus 2308] gi|189019543|gb|ACD72265.1| Antitermination protein NusB [Brucella abortus S19] gi|225640651|gb|ACO00565.1| transcription antitermination factor NusB [Brucella melitensis ATCC 23457] gi|237790047|gb|EEP64257.1| transcription antitermination factor NusB [Brucella abortus str. 2308 A] gi|260096932|gb|EEW80807.1| antitermination protein NusB [Brucella abortus NCTC 8038] gi|260668065|gb|EEX55005.1| transcription antitermination protein NusB [Brucella abortus bv. 4 str. 292] gi|260672004|gb|EEX58825.1| transcription antitermination protein NusB [Brucella abortus bv. 2 str. 86/8/59] gi|260674634|gb|EEX61455.1| transcription antitermination protein NusB [Brucella abortus bv. 6 str. 870] gi|260873082|gb|EEX80151.1| conserved hypothetical protein [Brucella abortus bv. 9 str. C68] gi|260915381|gb|EEX82242.1| transcription antitermination protein NusB [Brucella abortus bv. 3 str. Tulya] gi|262765826|gb|EEZ11615.1| conserved hypothetical protein [Brucella melitensis bv. 3 str. Ether] gi|263094453|gb|EEZ18275.1| antitermination protein NusB [Brucella melitensis bv. 2 str. 63/9] gi|297175296|gb|EFH34643.1| transcription antitermination factor NusB [Brucella abortus bv. 5 str. B3196] gi|326408790|gb|ADZ65855.1| Antitermination protein NusB [Brucella melitensis M28] gi|326538508|gb|ADZ86723.1| transcription antitermination factor NusB [Brucella melitensis M5-90] Length = 171 Score = 183 bits (466), Expect = 6e-45, Method: Composition-based stats. Identities = 66/151 (43%), Positives = 96/151 (63%), Gaps = 3/151 (1%) Query: 4 QDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLH 63 + + +++RG+ARLAAVQAL+Q+D+ G E+++EYE +R + + + YL Sbjct: 8 RPTPNLPRTANKRGVARLAAVQALFQMDVAGTGVMEVVAEYEAFRLGKEVDG---TQYLD 64 Query: 64 VDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPV 123 D +WFR I+ GV++ + +D +I LTE W SRLD L +ILRAG EL VP Sbjct: 65 ADPQWFRAIVAGVVEDQLKLDPMIHQALTEDWPLSRLDSTLRAILRAGAWELKARKDVPT 124 Query: 124 EVIISEYVCIAHDFFYGDEPKFINAVLDKVS 154 VI+SEYV IA F+ DEPK +NAVLD+++ Sbjct: 125 AVIVSEYVDIAKAFYTEDEPKLVNAVLDRLA 155 >gi|13476941|ref|NP_108511.1| transcription antitermination protein NusB [Mesorhizobium loti MAFF303099] gi|22095963|sp|Q983A9|NUSB_RHILO RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|14027704|dbj|BAB54297.1| N-utilization substance protein B [Mesorhizobium loti MAFF303099] Length = 155 Score = 183 bits (466), Expect = 7e-45, Method: Composition-based stats. Identities = 73/158 (46%), Positives = 105/158 (66%), Gaps = 3/158 (1%) Query: 10 LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF 69 ++ +++RG ARLAAVQALYQ+D+ G EI +EYE +R + + ++Y D +WF Sbjct: 1 MRHANKRGAARLAAVQALYQMDVAGSGVFEITAEYEAFRLGKEVDG---ALYREADAQWF 57 Query: 70 RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISE 129 R I+ GV++ ++ ID +I LT+ W SRLD L +ILRAGV EL++ VPV VI+SE Sbjct: 58 RAILTGVVEDQKTIDPVIRQALTDDWPLSRLDSTLRAILRAGVYELMKREDVPVAVIVSE 117 Query: 130 YVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRSGCVSA 167 YV IA F+ DEPK +NAVLD+VSR+ + G ++ Sbjct: 118 YVDIAKAFYEEDEPKLVNAVLDRVSRRVRGEGRGKDAS 155 >gi|114704829|ref|ZP_01437737.1| transcription antitermination protein NusB [Fulvimarina pelagi HTCC2506] gi|114539614|gb|EAU42734.1| transcription antitermination protein NusB [Fulvimarina pelagi HTCC2506] Length = 163 Score = 183 bits (465), Expect = 8e-45, Method: Composition-based stats. Identities = 69/153 (45%), Positives = 100/153 (65%), Gaps = 3/153 (1%) Query: 6 NKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVD 65 ++ + +++RG+ARLAAVQALYQ+DI G E ++EYET+R + + + Y D Sbjct: 5 KQRSFRPANKRGVARLAAVQALYQMDIGGTPLVETVAEYETHRMGHEIDGE---TYRVAD 61 Query: 66 LEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEV 125 WFR I+ GV+ R++ ID +I + L W SRLD L +ILRAGV E+ + VPV V Sbjct: 62 AAWFRDIVSGVVRRQKAIDPIIHANLPPGWPLSRLDSTLRAILRAGVYEIETRNDVPVAV 121 Query: 126 IISEYVCIAHDFFYGDEPKFINAVLDKVSRKEE 158 I+SEYV +A FF +EPK +NA+LD+V+R+ Sbjct: 122 IVSEYVDVAKAFFEEEEPKLVNALLDRVAREMR 154 >gi|17987469|ref|NP_540103.1| transcription antitermination protein NusB [Brucella melitensis bv. 1 str. 16M] gi|256044456|ref|ZP_05447360.1| transcription antitermination protein NusB [Brucella melitensis bv. 1 str. Rev.1] gi|260563807|ref|ZP_05834293.1| antitermination protein NusB [Brucella melitensis bv. 1 str. 16M] gi|265990877|ref|ZP_06103434.1| conserved hypothetical protein [Brucella melitensis bv. 1 str. Rev.1] gi|22095950|sp|Q8YGH3|NUSB_BRUME RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|17983165|gb|AAL52367.1| n utilization substance protein b [Brucella melitensis bv. 1 str. 16M] gi|260153823|gb|EEW88915.1| antitermination protein NusB [Brucella melitensis bv. 1 str. 16M] gi|263001661|gb|EEZ14236.1| conserved hypothetical protein [Brucella melitensis bv. 1 str. Rev.1] Length = 171 Score = 183 bits (465), Expect = 8e-45, Method: Composition-based stats. Identities = 66/144 (45%), Positives = 95/144 (65%), Gaps = 3/144 (2%) Query: 11 KLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFR 70 + +++RG+ARLAAVQAL+Q+D+ G E+++EYE +R + + + YL D +WFR Sbjct: 15 RTANKRGVARLAAVQALFQMDVAGTGVMEVVAEYEAFRLGKEVDG---TQYLDADPQWFR 71 Query: 71 VIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEY 130 I+ GV++ + +D +I LTE W SRLD L +ILRAG EL VP VI+SEY Sbjct: 72 AIVAGVVEDQLKLDPMIHQALTEDWPLSRLDSTLRAILRAGAWELKARKDVPTAVIVSEY 131 Query: 131 VCIAHDFFYGDEPKFINAVLDKVS 154 V IA F+ DEPK +NAVLD+++ Sbjct: 132 VDIAKAFYTEDEPKLVNAVLDRLA 155 >gi|319405757|emb|CBI79380.1| N utilization substance protein B [Bartonella sp. AR 15-3] Length = 156 Score = 182 bits (463), Expect = 1e-44, Method: Composition-based stats. Identities = 73/156 (46%), Positives = 104/156 (66%), Gaps = 3/156 (1%) Query: 1 MTIQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESV 60 M K L L+++RG ARLAAVQALYQ+DI+G E+I+EY+ YR D + S Sbjct: 1 MDDIKGKDSLILANKRGAARLAAVQALYQMDIVGIGVREVIAEYKAYRLGKDIDG---SQ 57 Query: 61 YLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHS 120 YL D +WFR I+ GV+ ++ +D ++ L+E+W+ SRLD L +ILRAG+ ELI Sbjct: 58 YLDADFQWFRSIVVGVVKDQKQLDPMLHQQLSEEWALSRLDSTLRAILRAGLWELINRKD 117 Query: 121 VPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRK 156 VPV VI++EYV IA FF +EP+ +NAVLD ++++ Sbjct: 118 VPVAVIMNEYVDIAKAFFESNEPRLVNAVLDSIAKE 153 >gi|91977147|ref|YP_569806.1| transcription antitermination protein NusB [Rhodopseudomonas palustris BisB5] gi|119390810|sp|Q136T4|NUSB_RHOPS RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|91683603|gb|ABE39905.1| NusB antitermination factor [Rhodopseudomonas palustris BisB5] Length = 174 Score = 182 bits (463), Expect = 1e-44, Method: Composition-based stats. Identities = 60/152 (39%), Positives = 92/152 (60%), Gaps = 3/152 (1%) Query: 5 DNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHV 64 D K + ++RRG ARLAAVQALYQ+DI G + +E+E++ + E D YL Sbjct: 18 DKKPGDRKANRRGAARLAAVQALYQMDIGGAGIDDTFAEFESHWIGNEVEGDQ---YLPA 74 Query: 65 DLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVE 124 + +FR I+ GV+ + +D LI L + W +R+D I+ +++RAG EL +P Sbjct: 75 EAAFFRDIVSGVVRDQTKLDPLIDEALAKGWPLARIDAIIRAVMRAGAYELEHRKDIPAR 134 Query: 125 VIISEYVCIAHDFFYGDEPKFINAVLDKVSRK 156 V++SEYV +AH F DE +NAVLD+++R+ Sbjct: 135 VVVSEYVDVAHAFVEKDETGMVNAVLDQIARQ 166 >gi|328543540|ref|YP_004303649.1| transcription antitermination protein NusB [polymorphum gilvum SL003B-26A1] gi|326413284|gb|ADZ70347.1| transcription antitermination protein NusB [Polymorphum gilvum SL003B-26A1] Length = 171 Score = 182 bits (463), Expect = 1e-44, Method: Composition-based stats. Identities = 60/173 (34%), Positives = 100/173 (57%), Gaps = 6/173 (3%) Query: 1 MTIQ---DNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDV 57 MT + + +D + +++RG ARL AVQALYQ+DI G S T++++E+ +R + + Sbjct: 1 MTDKVAHEGGRDARPANKRGAARLGAVQALYQMDIGGASLTDVVNEFTAFRLGKELDG-- 58 Query: 58 ESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIE 117 + Y D WF+ ++ GV++ ++ +D I + L E W R+D +L +ILRAG EL+ Sbjct: 59 -AQYREADELWFKDVVKGVVEEQRKLDPFIHTALVEDWPLRRIDSLLRAILRAGAYELLR 117 Query: 118 CHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRSGCVSAITQ 170 VP VIISEY+ +A F+ DEP+ +N VLD+++ + + Sbjct: 118 RRDVPARVIISEYIDVAKAFYAEDEPRLVNGVLDRLAHELRTGEFAAKDGTGE 170 >gi|319404314|emb|CBI77907.1| N utilization substance protein B [Bartonella rochalimae ATCC BAA-1498] Length = 156 Score = 181 bits (461), Expect = 2e-44, Method: Composition-based stats. Identities = 70/156 (44%), Positives = 105/156 (67%), Gaps = 3/156 (1%) Query: 1 MTIQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESV 60 M K L+L+++RG ARLAAVQALYQ+D++G E+I+EY+ YR D + + Sbjct: 1 MDDVKGKDSLRLANKRGAARLAAVQALYQMDMVGIGAMEVIAEYKAYRLGKDIDG---NQ 57 Query: 61 YLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHS 120 YL D +WFR II GV+ ++ +D ++ L+E+W+ SRLD L +ILRAG+ ELI Sbjct: 58 YLDADFQWFRSIIVGVVRDQKQLDPMLHQQLSEEWALSRLDSTLRAILRAGLWELINRKG 117 Query: 121 VPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRK 156 +P+ VI++EY+ IA FF DEP+ +NAVLD ++++ Sbjct: 118 MPIAVILNEYIDIAKAFFDNDEPRLVNAVLDSIAKE 153 >gi|49474164|ref|YP_032206.1| transcription antitermination protein NusB [Bartonella quintana str. Toulouse] gi|81647100|sp|Q6G004|NUSB_BARQU RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|49239668|emb|CAF26039.1| N utilization substance protein B [Bartonella quintana str. Toulouse] Length = 156 Score = 181 bits (461), Expect = 2e-44, Method: Composition-based stats. Identities = 72/159 (45%), Positives = 102/159 (64%), Gaps = 3/159 (1%) Query: 1 MTIQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESV 60 M K +L+++RG ARLAAVQALYQ+DI+G E +EYE Y + + + Sbjct: 1 MADIKGKYSPRLANKRGAARLAAVQALYQMDIVGSGVMETAAEYEAYHLEKNIDG---NQ 57 Query: 61 YLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHS 120 YL D +WF II GV+ ++ +D ++ L+ +WS SRLD IL +ILRAG+ ELI Sbjct: 58 YLDADFQWFLAIITGVVKDQKQLDPMLHQQLSAEWSLSRLDSILRAILRAGLWELINRQD 117 Query: 121 VPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEI 159 VP+ V+++EYV IA FF GDEPK +NAVLD +++K + Sbjct: 118 VPIAVVMNEYVDIAKAFFEGDEPKLVNAVLDSMAKKIRL 156 >gi|49080752|gb|AAT50054.1| PA4052 [synthetic construct] Length = 160 Score = 181 bits (461), Expect = 2e-44, Method: Composition-based stats. Identities = 50/164 (30%), Positives = 76/164 (46%), Gaps = 18/164 (10%) Query: 1 MTIQDN-----KKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTEL 55 M+ QD+ K + R AR AVQALY I G EI +++ T Sbjct: 1 MSNQDSGNPAAKPPKGKTAARRKARSLAVQALYSWQIAGQPLHEIEAQFRT--------- 51 Query: 56 DVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLEL 115 ++ + VD +F I+HGV +K +D CL + +D + +ILR EL Sbjct: 52 --DNDFSEVDGAYFHEILHGVPRQKSELDSTFEPCLDR--PLAEIDPVELAILRLSTYEL 107 Query: 116 IECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEI 159 VP +V+I+E + +A F D KF+N VLDK++ + Sbjct: 108 RNRIDVPYKVVINEGIELAKTFGATDGHKFVNGVLDKLAPRLRA 151 >gi|90424163|ref|YP_532533.1| transcription antitermination protein NusB [Rhodopseudomonas palustris BisB18] gi|119390809|sp|Q214H2|NUSB_RHOPB RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|90106177|gb|ABD88214.1| NusB antitermination factor [Rhodopseudomonas palustris BisB18] Length = 169 Score = 181 bits (461), Expect = 3e-44, Method: Composition-based stats. Identities = 59/154 (38%), Positives = 94/154 (61%), Gaps = 3/154 (1%) Query: 3 IQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYL 62 + K K ++RRG ARLAAVQALYQ+D+ G +I +E+E++ + E D YL Sbjct: 10 NKPAPKGEKKANRRGAARLAAVQALYQMDVGGAGLNDIFAEFESHWLGNEVEGDQ---YL 66 Query: 63 HVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVP 122 + +F+ ++ GV+ + +D LI L + W +R+D IL +++RAG EL VP Sbjct: 67 PAEQAFFQDVVSGVVRDQAKLDPLIDVALAKGWPLARIDAILRAVMRAGAYELEHRKDVP 126 Query: 123 VEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRK 156 V++SEYV +A+ F G+E +NAVLD+++R+ Sbjct: 127 ARVVVSEYVDVANAFVEGEETGMVNAVLDQIARQ 160 >gi|152985013|ref|YP_001346435.1| transcription antitermination protein NusB [Pseudomonas aeruginosa PA7] gi|150960171|gb|ABR82196.1| transcription antitermination factor NusB [Pseudomonas aeruginosa PA7] Length = 159 Score = 181 bits (460), Expect = 3e-44, Method: Composition-based stats. Identities = 50/164 (30%), Positives = 76/164 (46%), Gaps = 18/164 (10%) Query: 1 MTIQDN-----KKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTEL 55 M+ QD+ K + R AR AVQALY I G EI +++ T Sbjct: 1 MSNQDSGSPAAKPPKGKTAARRKARSLAVQALYSWQIAGQPLHEIEAQFRT--------- 51 Query: 56 DVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLEL 115 ++ + VD +F I+HGV +K +D CL + +D + +ILR EL Sbjct: 52 --DNDFSEVDGAYFHEILHGVPRQKSELDSTFEPCLDR--PLAEIDPVELAILRLSTYEL 107 Query: 116 IECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEI 159 VP +V+I+E + +A F D KF+N VLDK++ + Sbjct: 108 RNRIDVPYKVVINEGIELAKTFGATDGHKFVNGVLDKLAPRLRA 151 >gi|209884998|ref|YP_002288855.1| transcription antitermination factor NusB [Oligotropha carboxidovorans OM5] gi|209873194|gb|ACI92990.1| transcription antitermination factor NusB [Oligotropha carboxidovorans OM5] Length = 156 Score = 181 bits (460), Expect = 3e-44, Method: Composition-based stats. Identities = 61/150 (40%), Positives = 88/150 (58%), Gaps = 3/150 (2%) Query: 12 LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71 ++RRG ARLAAVQALYQ+DI G +I +E+E++ + E D YL + +FR Sbjct: 8 KANRRGAARLAAVQALYQMDIAGAGINDIFAEFESHWLGNEVEGDE---YLPAEAAFFRD 64 Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131 I+ GV+ + ID ++ L+ W R++ IL + LRAG EL VP V+I EYV Sbjct: 65 IVSGVVRDQGRIDPMLDEALSRGWPLKRIEAILRATLRAGAYELGHRKDVPARVVIKEYV 124 Query: 132 CIAHDFFYGDEPKFINAVLDKVSRKEEIKR 161 +AH FF DE +NAVLD+++R+ Sbjct: 125 DVAHAFFEADEAGMVNAVLDQIARQTRAGE 154 >gi|15599247|ref|NP_252741.1| transcription antitermination protein NusB [Pseudomonas aeruginosa PAO1] gi|107103566|ref|ZP_01367484.1| hypothetical protein PaerPA_01004636 [Pseudomonas aeruginosa PACS2] gi|116052089|ref|YP_789067.1| transcription antitermination protein NusB [Pseudomonas aeruginosa UCBPP-PA14] gi|218889667|ref|YP_002438531.1| transcription antitermination protein NusB [Pseudomonas aeruginosa LESB58] gi|254242734|ref|ZP_04936056.1| NusB protein [Pseudomonas aeruginosa 2192] gi|296387391|ref|ZP_06876890.1| transcription antitermination protein NusB [Pseudomonas aeruginosa PAb1] gi|313109495|ref|ZP_07795451.1| NusB protein [Pseudomonas aeruginosa 39016] gi|22095967|sp|Q9HWX6|NUSB_PSEAE RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|9950248|gb|AAG07439.1|AE004821_12 NusB protein [Pseudomonas aeruginosa PAO1] gi|115587310|gb|ABJ13325.1| NusB [Pseudomonas aeruginosa UCBPP-PA14] gi|126196112|gb|EAZ60175.1| NusB protein [Pseudomonas aeruginosa 2192] gi|218769890|emb|CAW25651.1| NusB protein [Pseudomonas aeruginosa LESB58] gi|310881953|gb|EFQ40547.1| NusB protein [Pseudomonas aeruginosa 39016] Length = 159 Score = 181 bits (459), Expect = 4e-44, Method: Composition-based stats. Identities = 50/164 (30%), Positives = 76/164 (46%), Gaps = 18/164 (10%) Query: 1 MTIQDN-----KKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTEL 55 M+ QD+ K + R AR AVQALY I G EI +++ T Sbjct: 1 MSNQDSGNPAAKPPKGKTAARRKARSLAVQALYSWQIAGQPLHEIEAQFRT--------- 51 Query: 56 DVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLEL 115 ++ + VD +F I+HGV +K +D CL + +D + +ILR EL Sbjct: 52 --DNDFSEVDGAYFHEILHGVPRQKSELDSTFEPCLDR--PLAEIDPVELAILRLSTYEL 107 Query: 116 IECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEI 159 VP +V+I+E + +A F D KF+N VLDK++ + Sbjct: 108 RNRIDVPYKVVINEGIELAKTFGATDGHKFVNGVLDKLAPRLRA 151 >gi|163843041|ref|YP_001627445.1| transcription antitermination protein NusB [Brucella suis ATCC 23445] gi|189035881|sp|B0CL95|NUSB_BRUSI RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|163673764|gb|ABY37875.1| transcription antitermination factor NusB [Brucella suis ATCC 23445] Length = 171 Score = 181 bits (459), Expect = 4e-44, Method: Composition-based stats. Identities = 66/151 (43%), Positives = 95/151 (62%), Gaps = 3/151 (1%) Query: 4 QDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLH 63 + + +++RG+ARLAA QALYQ+D+ G E+++EYE +R + + + YL Sbjct: 8 RPTPNLPRTANKRGVARLAAAQALYQMDVAGTGVMEVVAEYEAFRLGKEVDG---TQYLD 64 Query: 64 VDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPV 123 D +WFR I+ GV++ + +D +I LTE W SRLD L +ILRAG EL VP Sbjct: 65 ADPQWFRAIVAGVVEDQLKLDPMIHQALTEDWPLSRLDSTLRAILRAGAWELKARKDVPT 124 Query: 124 EVIISEYVCIAHDFFYGDEPKFINAVLDKVS 154 VI+SEYV IA F+ DEPK +NAVLD+++ Sbjct: 125 AVIVSEYVDIAKAFYTEDEPKLVNAVLDRLA 155 >gi|27380139|ref|NP_771668.1| transcription antitermination protein NusB [Bradyrhizobium japonicum USDA 110] gi|32171616|sp|Q89K81|NUSB_BRAJA RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|27353293|dbj|BAC50293.1| N-utilization substance protein B [Bradyrhizobium japonicum USDA 110] Length = 165 Score = 181 bits (459), Expect = 4e-44, Method: Composition-based stats. Identities = 62/167 (37%), Positives = 95/167 (56%), Gaps = 6/167 (3%) Query: 1 MTIQDNKKD---LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDV 57 M + K K ++RRG ARLAAVQALYQ+DI G +I +E+E++ + E D Sbjct: 1 MADNNKKPAGLTEKKANRRGAARLAAVQALYQMDIAGAGINDIFAEFESHWLGNEVEGD- 59 Query: 58 ESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIE 117 YL + +FR ++ GV+ ++ +D LI L++ W R++ IL ++LRAG EL Sbjct: 60 --TYLPAEAAFFRDVVSGVVRDQKKLDPLIDEALSKGWPLKRIEAILRAVLRAGAYELQH 117 Query: 118 CHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRSGC 164 VP V++SEYV +A+ F +E +NAVLD++ R+ G Sbjct: 118 RKDVPGRVVVSEYVDVANAFVDREETGMVNAVLDQIGRQFRGDEFGR 164 >gi|254502610|ref|ZP_05114761.1| transcription antitermination factor NusB [Labrenzia alexandrii DFL-11] gi|222438681|gb|EEE45360.1| transcription antitermination factor NusB [Labrenzia alexandrii DFL-11] Length = 177 Score = 181 bits (459), Expect = 4e-44, Method: Composition-based stats. Identities = 62/158 (39%), Positives = 95/158 (60%), Gaps = 3/158 (1%) Query: 4 QDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLH 63 Q + + +++RG+ARLAAVQALYQ+DI G T ++SEY +R + + + Y Sbjct: 13 QKSDNSSRPANKRGVARLAAVQALYQMDIGGAPLTNVVSEYTAFRLGKEIDGEQ---YRD 69 Query: 64 VDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPV 123 D +WF+ I+ GV+ ++ +D I + L E W R+D +L +ILRAG EL+ VP Sbjct: 70 ADEQWFKHILAGVVADQKFLDPYIHTALKEDWPLKRIDSLLRAILRAGGYELLRRRDVPA 129 Query: 124 EVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKR 161 +VIISEY+ +A FF DEP +N VLD+++ + Sbjct: 130 KVIISEYIDVAKAFFEDDEPGLVNGVLDRLAHELRSPE 167 >gi|121602835|ref|YP_988938.1| transcription antitermination protein NusB [Bartonella bacilliformis KC583] gi|120615012|gb|ABM45613.1| transcription antitermination factor NusB [Bartonella bacilliformis KC583] Length = 154 Score = 181 bits (459), Expect = 4e-44, Method: Composition-based stats. Identities = 73/146 (50%), Positives = 95/146 (65%), Gaps = 3/146 (2%) Query: 14 HRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVII 73 ++RG ARLAAVQALYQ+DI+G E +EYE YR + + D YL D +WFR II Sbjct: 12 NKRGAARLAAVQALYQMDIVGTGVMETAAEYEAYRLGKEIDGDQ---YLDADFQWFRAII 68 Query: 74 HGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCI 133 GV+ ++ +D ++ L+E+WS SRLD IL +ILRAG+ ELI VPV VII+EYV I Sbjct: 69 AGVVRDQKKLDPMLHQQLSEEWSLSRLDSILRAILRAGLWELINRKEVPVAVIINEYVDI 128 Query: 134 AHDFFYGDEPKFINAVLDKVSRKEEI 159 A FF EPK +NAVLD ++ Sbjct: 129 AKAFFEDGEPKLVNAVLDNTAKNSRA 154 >gi|254236941|ref|ZP_04930264.1| NusB protein [Pseudomonas aeruginosa C3719] gi|126168872|gb|EAZ54383.1| NusB protein [Pseudomonas aeruginosa C3719] Length = 159 Score = 180 bits (457), Expect = 7e-44, Method: Composition-based stats. Identities = 49/164 (29%), Positives = 75/164 (45%), Gaps = 18/164 (10%) Query: 1 MTIQDN-----KKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTEL 55 M+ QD+ K + R AR AVQALY I G EI +++ Sbjct: 1 MSNQDSGNPAAKPPKGKTAARRKARSLAVQALYSWQIAGQPLHEIEAQFRA--------- 51 Query: 56 DVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLEL 115 ++ + VD +F I+HGV +K +D CL + +D + +ILR EL Sbjct: 52 --DNDFSEVDGAYFHEILHGVPRQKSELDSTFEPCLDR--PLAEIDPVELAILRLSTYEL 107 Query: 116 IECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEI 159 VP +V+I+E + +A F D KF+N VLDK++ + Sbjct: 108 RNRIDVPYKVVINEGIELAKTFGATDGHKFVNGVLDKLAPRLRA 151 >gi|312113512|ref|YP_004011108.1| NusB antitermination factor [Rhodomicrobium vannielii ATCC 17100] gi|311218641|gb|ADP70009.1| NusB antitermination factor [Rhodomicrobium vannielii ATCC 17100] Length = 185 Score = 180 bits (457), Expect = 7e-44, Method: Composition-based stats. Identities = 64/161 (39%), Positives = 92/161 (57%), Gaps = 6/161 (3%) Query: 7 KKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDL 66 K DL R ARLAAVQALYQ+++ + ++ E+ RF + +Y D Sbjct: 12 KADLPAGQPRTRARLAAVQALYQMEMTQRDLSLVLQEFLGRRF------ETVEIYAGADR 65 Query: 67 EWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVI 126 +FR I+ G+ + IDL I++ L W SR+D IL +ILR+GV EL + + VP + Sbjct: 66 SFFRDIVEGIARGQAKIDLEIAAHLASGWKLSRIDSILRAILRSGVYELTDRNDVPARAV 125 Query: 127 ISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRSGCVSA 167 I+EYV IA DFF G+EP +N VLD+V+R + + G S Sbjct: 126 INEYVEIAKDFFGGEEPGVVNGVLDRVARAKRSREFGRKSG 166 >gi|302189354|ref|ZP_07266027.1| transcription antitermination protein NusB [Pseudomonas syringae pv. syringae 642] Length = 165 Score = 180 bits (457), Expect = 7e-44, Method: Composition-based stats. Identities = 56/169 (33%), Positives = 86/169 (50%), Gaps = 23/169 (13%) Query: 2 TIQDNKKDLK-------LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTE 54 T Q N +D K S +R AR A QALYQ + G S EI +++ Sbjct: 6 TDQFNPRDAKSPEAAKGKSAKRREARQMATQALYQWHMAGHSLNEIEAQFR--------- 56 Query: 55 LDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLE 114 V++ + +VD +FR ++HGV K ID +S CL + LD + ++LR E Sbjct: 57 --VDNDFSNVDGTYFRELLHGVATNKTEIDTALSPCLD--LTIEELDPVELAVLRLSTFE 112 Query: 115 LIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVS---RKEEIK 160 L++ VP V+I+E + +A + D KF+N VLDK++ R+ E+K Sbjct: 113 LLKRIDVPYRVVINEGIELAKVYGSTDGHKFVNGVLDKLAPRLREVEVK 161 >gi|319408451|emb|CBI82106.1| N utilization substance protein B [Bartonella schoenbuchensis R1] Length = 156 Score = 180 bits (457), Expect = 8e-44, Method: Composition-based stats. Identities = 72/159 (45%), Positives = 108/159 (67%), Gaps = 3/159 (1%) Query: 1 MTIQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESV 60 M +K L+++RG+ARLAAVQALYQ+DI+G EI +EY+ YR D + D Sbjct: 1 MVDIKSKHSSHLANKRGVARLAAVQALYQMDIVGIGVREIAAEYKAYRLGKDIDGDQ--- 57 Query: 61 YLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHS 120 YL D +WFR +I GV+ ++ +D ++ L+E+WS SRLD IL +ILRAG+ EL+ + Sbjct: 58 YLDADFQWFRAVIAGVVQNQKQLDPMLQQKLSEEWSLSRLDSILRAILRAGLWELMNHKN 117 Query: 121 VPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEI 159 +P VI+SEYV +A FF GDEP+ +NA+LD+++++ + Sbjct: 118 IPTAVIVSEYVDVAKAFFEGDEPRLVNAILDRIAKEIRL 156 >gi|330899661|gb|EGH31080.1| transcription antitermination protein NusB [Pseudomonas syringae pv. japonica str. M301072PT] gi|330943563|gb|EGH45900.1| transcription antitermination protein NusB [Pseudomonas syringae pv. pisi str. 1704B] gi|330976725|gb|EGH76766.1| transcription antitermination protein NusB [Pseudomonas syringae pv. aptata str. DSM 50252] Length = 165 Score = 179 bits (456), Expect = 9e-44, Method: Composition-based stats. Identities = 55/169 (32%), Positives = 85/169 (50%), Gaps = 23/169 (13%) Query: 2 TIQDNKKDLK-------LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTE 54 T Q N +D K S +R AR A QALYQ + G S EI +++ Sbjct: 6 TDQFNPRDAKSPEAAKGKSAKRREARQMATQALYQWHMAGHSLNEIEAQFR--------- 56 Query: 55 LDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLE 114 V++ + +VD +F ++HGV K ID +S CL + LD + ++LR E Sbjct: 57 --VDNDFSNVDGTYFHELLHGVATNKTEIDTALSPCLD--LTIEELDPVELAVLRLSTFE 112 Query: 115 LIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVS---RKEEIK 160 L++ VP V+I+E + +A + D KF+N VLDK++ R+ E+K Sbjct: 113 LLKRIDVPYRVVINEGIELAKVYGSTDGHKFVNGVLDKLAPRLREVEVK 161 >gi|115524819|ref|YP_781730.1| transcription antitermination protein NusB [Rhodopseudomonas palustris BisA53] gi|115518766|gb|ABJ06750.1| NusB antitermination factor [Rhodopseudomonas palustris BisA53] Length = 174 Score = 179 bits (455), Expect = 1e-43, Method: Composition-based stats. Identities = 57/150 (38%), Positives = 93/150 (62%), Gaps = 3/150 (2%) Query: 7 KKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDL 66 K + ++RRG ARLAAVQALYQ+++ G +I +E+E++ + E + YL + Sbjct: 19 PKGDRKANRRGAARLAAVQALYQMEVGGAGLNDIFAEFESHWLGHEVEGEQ---YLPAEA 75 Query: 67 EWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVI 126 +F+ I+ GV+ + +D LI L+ W +R++ IL +++RAG EL VP V+ Sbjct: 76 AFFQDIVSGVVRDQLQLDPLIDEALSRGWPLARIEAILRAVMRAGAYELQHRKDVPARVV 135 Query: 127 ISEYVCIAHDFFYGDEPKFINAVLDKVSRK 156 +SEYV +A+ F GDE +NAVLD+++R+ Sbjct: 136 VSEYVDVANAFVEGDETGMVNAVLDQIARQ 165 >gi|86749756|ref|YP_486252.1| transcription antitermination protein NusB [Rhodopseudomonas palustris HaA2] gi|119390808|sp|Q2IWR9|NUSB_RHOP2 RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|86572784|gb|ABD07341.1| NusB antitermination factor [Rhodopseudomonas palustris HaA2] Length = 169 Score = 179 bits (454), Expect = 2e-43, Method: Composition-based stats. Identities = 60/153 (39%), Positives = 93/153 (60%), Gaps = 3/153 (1%) Query: 4 QDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLH 63 + K + ++RRG ARLAAVQALYQ+DI G E +E+E++ + E D YL Sbjct: 11 KPVPKGDRKANRRGAARLAAVQALYQMDIGGAGINETFAEFESHWIGNEVEGDQ---YLP 67 Query: 64 VDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPV 123 + +FR ++ GV+ ++ +D LI L + W +R+D IL +++RAG EL +P Sbjct: 68 AEAAFFRDVVSGVVRDQKKLDPLIDDALAKGWPLARIDAILRAVMRAGAYELEHRKDIPA 127 Query: 124 EVIISEYVCIAHDFFYGDEPKFINAVLDKVSRK 156 V++SEYV +AH F DE +NAVLD+++R+ Sbjct: 128 RVVVSEYVDVAHAFVEKDETGMVNAVLDQIARQ 160 >gi|71737269|ref|YP_276619.1| transcription antitermination protein NusB [Pseudomonas syringae pv. phaseolicola 1448A] gi|257483271|ref|ZP_05637312.1| transcription antitermination protein NusB [Pseudomonas syringae pv. tabaci ATCC 11528] gi|289629163|ref|ZP_06462117.1| transcription antitermination protein NusB [Pseudomonas syringae pv. aesculi str. NCPPB3681] gi|289647768|ref|ZP_06479111.1| transcription antitermination protein NusB [Pseudomonas syringae pv. aesculi str. 2250] gi|298488893|ref|ZP_07006917.1| Transcription termination protein NusB [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|119390796|sp|Q48DC2|NUSB_PSE14 RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|71557822|gb|AAZ37033.1| N utilization substance protein B [Pseudomonas syringae pv. phaseolicola 1448A] gi|298156568|gb|EFH97664.1| Transcription termination protein NusB [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|320330417|gb|EFW86396.1| transcription antitermination protein NusB [Pseudomonas syringae pv. glycinea str. race 4] gi|330869912|gb|EGH04621.1| transcription antitermination protein NusB [Pseudomonas syringae pv. aesculi str. 0893_23] gi|330874033|gb|EGH08182.1| transcription antitermination protein NusB [Pseudomonas syringae pv. glycinea str. race 4] gi|330888050|gb|EGH20711.1| transcription antitermination protein NusB [Pseudomonas syringae pv. mori str. 301020] gi|330988217|gb|EGH86320.1| transcription antitermination protein NusB [Pseudomonas syringae pv. lachrymans str. M301315] gi|331012494|gb|EGH92550.1| transcription antitermination protein NusB [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 165 Score = 178 bits (452), Expect = 2e-43, Method: Composition-based stats. Identities = 55/169 (32%), Positives = 86/169 (50%), Gaps = 23/169 (13%) Query: 2 TIQDNKKDLK-------LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTE 54 T Q N +D K S +R AR A QALYQ + G + EI +++ Sbjct: 6 TDQFNPRDAKSPEAAKGKSAKRREARQMATQALYQWHMAGHALNEIEAQFR--------- 56 Query: 55 LDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLE 114 V++ + +VD +FR ++HGV K ID +S CL + LD + ++LR E Sbjct: 57 --VDNDFSNVDGAYFRELLHGVATNKTEIDTALSPCLD--LTIEELDPVELAVLRLSTFE 112 Query: 115 LIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVS---RKEEIK 160 L++ VP V+I+E + +A + D KF+N VLDK++ R+ E+K Sbjct: 113 LLKRIDVPYRVVINEGIELAKVYGSTDGHKFVNGVLDKLAPRLREVEVK 161 >gi|299135081|ref|ZP_07028272.1| NusB antitermination factor [Afipia sp. 1NLS2] gi|298590058|gb|EFI50262.1| NusB antitermination factor [Afipia sp. 1NLS2] Length = 166 Score = 178 bits (452), Expect = 3e-43, Method: Composition-based stats. Identities = 60/145 (41%), Positives = 87/145 (60%), Gaps = 3/145 (2%) Query: 12 LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71 ++RRG ARLAAVQALYQ+DI G +I +E+E++ + E D YL + +FR Sbjct: 16 KANRRGAARLAAVQALYQMDIAGAGINDIFAEFESHWLGNEVEGDE---YLPAEAAFFRD 72 Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131 ++ GV+ + ID ++ LT W R++ IL + LRAG EL VP V+I EYV Sbjct: 73 VVSGVVRDQGKIDPMLDEALTRGWPLKRIEAILRATLRAGAYELGHRKDVPARVVIKEYV 132 Query: 132 CIAHDFFYGDEPKFINAVLDKVSRK 156 +AH F DE +NAVLD+++R+ Sbjct: 133 DVAHAFVEADEAGMVNAVLDQIARQ 157 >gi|237797516|ref|ZP_04585977.1| transcription antitermination protein NusB [Pseudomonas syringae pv. oryzae str. 1_6] gi|331020366|gb|EGI00423.1| transcription antitermination protein NusB [Pseudomonas syringae pv. oryzae str. 1_6] Length = 165 Score = 178 bits (452), Expect = 3e-43, Method: Composition-based stats. Identities = 54/169 (31%), Positives = 85/169 (50%), Gaps = 23/169 (13%) Query: 2 TIQDNKKDLK-------LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTE 54 T Q N +D K S +R AR A QALYQ + G + EI +++ Sbjct: 6 TDQFNPRDAKSPEAAKGKSAKRREARQMATQALYQWHMAGHALNEIEAQFR--------- 56 Query: 55 LDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLE 114 V++ + +VD +F ++HGV K ID +S CL + LD + ++LR E Sbjct: 57 --VDNDFSNVDGTYFHELLHGVATNKTEIDTALSPCLD--LTIEELDPVELAVLRLSTFE 112 Query: 115 LIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVS---RKEEIK 160 L++ VP V+I+E + +A + D KF+N VLDK++ R+ E+K Sbjct: 113 LLKRIDVPYRVVINEGIELAKVYGSTDGHKFVNGVLDKLAPRLREVEVK 161 >gi|316934108|ref|YP_004109090.1| NusB antitermination factor [Rhodopseudomonas palustris DX-1] gi|315601822|gb|ADU44357.1| NusB antitermination factor [Rhodopseudomonas palustris DX-1] Length = 173 Score = 177 bits (451), Expect = 3e-43, Method: Composition-based stats. Identities = 63/156 (40%), Positives = 95/156 (60%), Gaps = 7/156 (4%) Query: 1 MTIQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESV 60 MT + +K ++RRG ARLAAVQALYQ+DI G E +E+E++ + E + Sbjct: 17 MTPKGERK----ANRRGAARLAAVQALYQMDIGGAGINETFAEFESFWIGNEVEGEQ--- 69 Query: 61 YLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHS 120 YL + +FR I+ GV+ ++ ID LI L + W +R+D IL +++RAG EL Sbjct: 70 YLPAEAAFFRDIVSGVVREQKQIDPLIDDLLAKGWPLARIDAILRAVMRAGAYELEHRKD 129 Query: 121 VPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRK 156 +P V++SEYV +AH F DE +NAVLD+++R+ Sbjct: 130 IPARVVVSEYVDVAHAFVEKDETGMVNAVLDQIARQ 165 >gi|192291385|ref|YP_001991990.1| transcription antitermination protein NusB [Rhodopseudomonas palustris TIE-1] gi|238692600|sp|B3QJK9|NUSB_RHOPT RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|192285134|gb|ACF01515.1| NusB antitermination factor [Rhodopseudomonas palustris TIE-1] Length = 174 Score = 177 bits (451), Expect = 3e-43, Method: Composition-based stats. Identities = 63/161 (39%), Positives = 95/161 (59%), Gaps = 7/161 (4%) Query: 1 MTIQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESV 60 MT + +K ++RRG ARLAAVQALYQ+DI G E +E+E++ + E + Sbjct: 17 MTPKGERK----ANRRGAARLAAVQALYQMDIGGAGINETFAEFESFWIGNEVEGEQ--- 69 Query: 61 YLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHS 120 YL + +FR I+ GV+ ++ ID LI L W +R+D IL +++RAG EL Sbjct: 70 YLPAEAAFFRDIVAGVVREQKQIDPLIDDLLARGWPLARIDAILRAVMRAGAYELEHRKD 129 Query: 121 VPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKR 161 +P V++SEYV +AH F DE +NAVLD+++R+ + Sbjct: 130 IPARVVVSEYVDVAHAFVEKDETGMVNAVLDQIARRFRAEE 170 >gi|170750376|ref|YP_001756636.1| NusB antitermination factor [Methylobacterium radiotolerans JCM 2831] gi|170656898|gb|ACB25953.1| NusB antitermination factor [Methylobacterium radiotolerans JCM 2831] Length = 197 Score = 177 bits (450), Expect = 5e-43, Method: Composition-based stats. Identities = 53/155 (34%), Positives = 86/155 (55%), Gaps = 3/155 (1%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 R ARLA VQALY++DI G + ++E+E + + + + + +FR ++ G Sbjct: 25 RSGARLAVVQALYEMDISGKGVLDALAEFEAFWIGQEVDG---IAHPPAETAFFRDLLRG 81 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135 ++ ++ ID + L + W R++++L +ILRAG EL+ VP ISEYV +AH Sbjct: 82 TVEEQRAIDPKLDQALAQGWPLRRIEIVLRAILRAGAYELMFRRDVPAAAAISEYVDVAH 141 Query: 136 DFFYGDEPKFINAVLDKVSRKEEIKRSGCVSAITQ 170 F+ DEP +NAVLD+V+R+ G A + Sbjct: 142 SFYTADEPGLVNAVLDRVAREVRPGEVGAPKASGK 176 >gi|39935796|ref|NP_948072.1| transcription antitermination protein NusB [Rhodopseudomonas palustris CGA009] gi|81562525|sp|Q6N688|NUSB_RHOPA RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|39649649|emb|CAE28171.1| antitermination factor, NusB [Rhodopseudomonas palustris CGA009] Length = 174 Score = 176 bits (448), Expect = 7e-43, Method: Composition-based stats. Identities = 63/156 (40%), Positives = 94/156 (60%), Gaps = 7/156 (4%) Query: 1 MTIQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESV 60 MT + +K ++RRG ARLAAVQALYQ+DI G E +E+E++ + E + Sbjct: 17 MTPKGERK----ANRRGAARLAAVQALYQMDIGGAGINETFAEFESFWIGNEVEGEQ--- 69 Query: 61 YLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHS 120 YL + +FR I+ GV+ ++ ID LI L W +R+D IL +++RAG EL Sbjct: 70 YLPAEAAFFRDIVAGVVREQKQIDPLIDDLLARGWPLARIDAILRAVMRAGAYELEHRKD 129 Query: 121 VPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRK 156 +P V++SEYV +AH F DE +NAVLD+++R+ Sbjct: 130 IPARVVVSEYVDVAHAFVEKDETGMVNAVLDQIARR 165 >gi|92117364|ref|YP_577093.1| transcription antitermination protein NusB [Nitrobacter hamburgensis X14] gi|119390788|sp|Q1QMB4|NUSB_NITHX RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|91800258|gb|ABE62633.1| NusB antitermination factor [Nitrobacter hamburgensis X14] Length = 160 Score = 176 bits (448), Expect = 7e-43, Method: Composition-based stats. Identities = 59/151 (39%), Positives = 91/151 (60%), Gaps = 3/151 (1%) Query: 11 KLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFR 70 K ++RRG ARLAAVQALYQ++I G ++ +E+E++ ++ E D YL + +FR Sbjct: 10 KKANRRGAARLAAVQALYQMEIGGAGINDVFAEFESHWLGSEVEGD---KYLPAEAAFFR 66 Query: 71 VIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEY 130 ++ GV+ + +D LI L+ W R+D IL ++LRAG EL VP V++SEY Sbjct: 67 DVVAGVVRDQARLDPLIDDALSRGWPLKRIDAILRAVLRAGSYELEHRKDVPARVVVSEY 126 Query: 131 VCIAHDFFYGDEPKFINAVLDKVSRKEEIKR 161 V +AH F +E +NAVLD+++R+ Sbjct: 127 VDVAHAFIEKEEVGMVNAVLDQIARRFRAGE 157 >gi|237809261|ref|YP_002893701.1| NusB antitermination factor [Tolumonas auensis DSM 9187] gi|259514913|sp|C4LAE0|NUSB_TOLAT RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|237501522|gb|ACQ94115.1| NusB antitermination factor [Tolumonas auensis DSM 9187] Length = 138 Score = 176 bits (448), Expect = 8e-43, Method: Composition-based stats. Identities = 46/152 (30%), Positives = 79/152 (51%), Gaps = 14/152 (9%) Query: 10 LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF 69 +K + RR AR A+QA+YQ + + +I+ +++ +E VDL +F Sbjct: 1 MKPAERR-KARHLALQAIYQWQLAKDNVADIVEQFK-----------LEQPTKGVDLPYF 48 Query: 70 RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISE 129 +++ GV++ ++D S L+ K LD I +LR EL C VP +V+I+E Sbjct: 49 ELLLTGVVNNVTNLDATFSPFLSRK--LDDLDQIDKGVLRLACYELTYCKDVPYKVVINE 106 Query: 130 YVCIAHDFFYGDEPKFINAVLDKVSRKEEIKR 161 + +A F D KF+N VLDKV ++ +++ Sbjct: 107 AIELAKAFATDDSHKFVNGVLDKVVKQMGLRQ 138 >gi|320322797|gb|EFW78890.1| transcription antitermination protein NusB [Pseudomonas syringae pv. glycinea str. B076] Length = 165 Score = 176 bits (447), Expect = 1e-42, Method: Composition-based stats. Identities = 55/169 (32%), Positives = 87/169 (51%), Gaps = 23/169 (13%) Query: 2 TIQDNKKDLK-------LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTE 54 T Q N +D K S +R AR A QALYQ + G + EI +++ Sbjct: 6 TDQFNPRDAKSPEAAKGKSAKRREARQMATQALYQWHMAGHALNEIEAQFR--------- 56 Query: 55 LDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLE 114 V++ + +VD +FR ++HGV K ID +S CL + LD++ ++LR E Sbjct: 57 --VDNDFSNVDGAYFRELLHGVATNKTEIDTALSPCLD--LTIEELDLVELAVLRLSTFE 112 Query: 115 LIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVS---RKEEIK 160 L++ VP V+I+E + +A + D KF+N VLDK++ R+ E+K Sbjct: 113 LLKRIDVPYRVVINEGIELAKVYGSTDGHKFVNGVLDKLAPRLREVEVK 161 >gi|307945261|ref|ZP_07660597.1| transcription antitermination factor NusB [Roseibium sp. TrichSKD4] gi|307771134|gb|EFO30359.1| transcription antitermination factor NusB [Roseibium sp. TrichSKD4] Length = 173 Score = 176 bits (446), Expect = 1e-42, Method: Composition-based stats. Identities = 60/166 (36%), Positives = 99/166 (59%), Gaps = 8/166 (4%) Query: 1 MTIQDNKKDL-----KLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTEL 55 M+ Q K + + +++RG+ARLAAVQALYQ+D+ + +ISE+ +R + + Sbjct: 1 MSEQAEPKKVATKAVRPANKRGVARLAAVQALYQMDVGEVPLSSVISEFTAFRLGKELDG 60 Query: 56 DVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLEL 115 + YL D +WF+ I++GV + ++ +D I LTE W R+D +L +ILR+G EL Sbjct: 61 EQ---YLDADEQWFKSIVNGVFEDQKFLDPFIHKALTEGWPLKRVDSLLRAILRSGSFEL 117 Query: 116 IECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKR 161 + VP +VIISEY+ + F+ DEP +N VLD+++ + + Sbjct: 118 LRRKDVPPKVIISEYIDVTKAFYEADEPGLVNGVLDRLAHELRNEE 163 >gi|254469407|ref|ZP_05082812.1| transcription antitermination factor NusB [Pseudovibrio sp. JE062] gi|211961242|gb|EEA96437.1| transcription antitermination factor NusB [Pseudovibrio sp. JE062] Length = 163 Score = 176 bits (446), Expect = 1e-42, Method: Composition-based stats. Identities = 58/158 (36%), Positives = 99/158 (62%), Gaps = 5/158 (3%) Query: 1 MTIQDNKKD--LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVE 58 MT ++NKK+ ++ +++RG+ARLAAVQA+YQ++I G ++++EYE YR + + + Sbjct: 1 MTTENNKKNAEVRPANKRGVARLAAVQAVYQMEITGARLNDVLNEYEAYRLGQEVDGEQ- 59 Query: 59 SVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIEC 118 Y D WFR ++ V + + ID I + L+E W R+D L +ILR G E + Sbjct: 60 --YRDADPAWFRDLVQAVFEDQLRIDPRIHTALSEDWPLKRIDTTLRAILRVGCAEFLRK 117 Query: 119 HSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRK 156 VP VII+EY+ +A F+ GDE + +N ++++++R+ Sbjct: 118 KDVPARVIINEYIDVAKSFYEGDEARLVNGIMNRLARE 155 >gi|23012491|ref|ZP_00052562.1| COG0781: Transcription termination factor [Magnetospirillum magnetotacticum MS-1] Length = 169 Score = 175 bits (445), Expect = 2e-42, Method: Composition-based stats. Identities = 55/170 (32%), Positives = 93/170 (54%), Gaps = 3/170 (1%) Query: 1 MTIQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESV 60 M + ++ R ARLA VQALY+++I + ++E+E + + + V Sbjct: 1 MNQPADTPAQPKTNTRTGARLAVVQALYEMEISDKGVIDALAEFEAFWIGQEIDG---VV 57 Query: 61 YLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHS 120 + + +FR ++ G ++ ++ ID + + L + W RL+++L +ILRAG EL+ Sbjct: 58 HPPAETAFFRDVLRGAVEEQRAIDPKLDAALAKGWPLRRLEVVLRAILRAGAYELMFRKD 117 Query: 121 VPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRSGCVSAITQ 170 VP ISEYV +AH F+ GDEP +NAVLD+V R+ G +A ++ Sbjct: 118 VPARAAISEYVDVAHSFYGGDEPGMVNAVLDRVGREVRSTEFGIPAAPSK 167 >gi|153878112|ref|ZP_02004488.1| transcription antitermination protein NusB [Beggiatoa sp. PS] gi|152065424|gb|EDN65512.1| transcription antitermination protein NusB [Beggiatoa sp. PS] Length = 164 Score = 175 bits (444), Expect = 2e-42, Method: Composition-based stats. Identities = 44/154 (28%), Positives = 77/154 (50%), Gaps = 4/154 (2%) Query: 6 NKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYR-FCADTELDVESVYLHV 64 +K R +AR +QALYQ + G +T I S++ + + E Sbjct: 4 KRKTFSPKA-RHVARERVLQALYQWQLTGQNTQLIESQFLDESTLSKEEDESEEPDMQKA 62 Query: 65 DLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVE 124 D+ +F+ ++H + ++ +D L + L K ++LD + +ILR G EL C +P + Sbjct: 63 DIPYFKQLLHSIPEKTSDLDKLFAPFLDRK--ITQLDPVELAILRIGSYELTHCQDIPFK 120 Query: 125 VIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEE 158 V+I+E V +A F K+IN VLDK++ ++ Sbjct: 121 VVINEAVELAKQFGAEQSHKYINGVLDKLAHSQQ 154 >gi|70732819|ref|YP_262586.1| transcription antitermination protein NusB [Pseudomonas fluorescens Pf-5] gi|119390798|sp|Q4K597|NUSB_PSEF5 RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|68347118|gb|AAY94724.1| N utilization substance protein B [Pseudomonas fluorescens Pf-5] Length = 166 Score = 174 bits (443), Expect = 2e-42, Method: Composition-based stats. Identities = 52/170 (30%), Positives = 84/170 (49%), Gaps = 24/170 (14%) Query: 2 TIQDNKKDLKLSH--------RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADT 53 + + N +D K ++ +R AR A QALYQ + S EI +++ Sbjct: 6 SDRFNPRDPKPANAGKPSKSAKRREARQLATQALYQWHMAKHSLNEIEAQFR-------- 57 Query: 54 ELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVL 113 V++ + +D +FR I+HGV K ID + CL + LD + ++LR Sbjct: 58 ---VDNDFTDIDGAYFREILHGVPANKNEIDTALVPCLD--LAIDELDPVELAVLRLSTW 112 Query: 114 ELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVS---RKEEIK 160 EL++ VP V+I+E + +A F D KF+N VLDK++ R+ E+K Sbjct: 113 ELLKRVDVPYRVVINEGIELAKVFGSTDGHKFVNGVLDKLAPRLREAEVK 162 >gi|146281225|ref|YP_001171378.1| transcription antitermination protein NusB [Pseudomonas stutzeri A1501] gi|166215709|sp|A4VHT5|NUSB_PSEU5 RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|145569430|gb|ABP78536.1| NusB protein [Pseudomonas stutzeri A1501] gi|327479379|gb|AEA82689.1| transcription antitermination protein NusB [Pseudomonas stutzeri DSM 4166] Length = 161 Score = 174 bits (443), Expect = 3e-42, Method: Composition-based stats. Identities = 46/149 (30%), Positives = 76/149 (51%), Gaps = 16/149 (10%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 R +AR A+QALYQ + G S EI +++ V++ + VD +F +++G Sbjct: 23 RRVARSLAMQALYQWHMAGQSLNEIEAQFR-----------VDNDFSGVDGAYFHELLNG 71 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135 V +K +D I+ L LD + +ILR EL++ VP V+I+E + +A Sbjct: 72 VARKKTEVDQAIAPNLDR--PLDELDPVELAILRLSTYELMQRIDVPYRVVINEGIELAK 129 Query: 136 DFFYGDEPKFINAVLDKVS---RKEEIKR 161 + D KF+N VLDK++ R E++ Sbjct: 130 VYGATDGHKFVNGVLDKLAPSLRSAEVRN 158 >gi|146308867|ref|YP_001189332.1| transcription antitermination protein NusB [Pseudomonas mendocina ymp] gi|145577068|gb|ABP86600.1| NusB antitermination factor [Pseudomonas mendocina ymp] Length = 159 Score = 174 bits (443), Expect = 3e-42, Method: Composition-based stats. Identities = 47/164 (28%), Positives = 73/164 (44%), Gaps = 18/164 (10%) Query: 1 MTIQDNKKDLKLSHR-----RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTEL 55 M+ N + K R AR A+QALY I G EI +++ Sbjct: 1 MSNSGNGQPAKKGPSGKILARREARTLAMQALYSWHIAGQPLNEIEAQFR---------- 50 Query: 56 DVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLEL 115 V++ + VD +F I+HGV +K +D + L +D + +ILR EL Sbjct: 51 -VDNDFSKVDGAYFHEILHGVPRQKTELDEAFTPLLDR--PLEEIDPVELAILRLSTYEL 107 Query: 116 IECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEI 159 VP +V+I+E + +A F D KF+N +LDK++ K Sbjct: 108 KNRVDVPYKVVINEGIELAKVFGATDGHKFVNGILDKLAPKLRA 151 >gi|99081967|ref|YP_614121.1| NusB antitermination factor [Ruegeria sp. TM1040] gi|99038247|gb|ABF64859.1| NusB antitermination factor [Ruegeria sp. TM1040] Length = 160 Score = 174 bits (443), Expect = 3e-42, Method: Composition-based stats. Identities = 61/162 (37%), Positives = 92/162 (56%), Gaps = 6/162 (3%) Query: 1 MTIQDNKKDLK-LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVES 59 MT +D K K + R ARL AVQAL+Q++ ST ++I E+E +RF A E D Sbjct: 1 MTSKDAPKPGKNKTQARSAARLYAVQALFQMEQSDQSTNKVIVEFEDHRFGATYEGDE-- 58 Query: 60 VYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECH 119 Y D + FR +++ ++ + ID + L KW +R+D L ++ RA E +E Sbjct: 59 -YAEGDTKLFRQLVNDAVNHQAKIDQMTDRALVAKWPIARIDPTLRALFRAAGAEFVES- 116 Query: 120 SVPVEVIISEYVCIAHDFF-YGDEPKFINAVLDKVSRKEEIK 160 PV+V+I+EYV IA FF G E F+NAVLD ++R+ + + Sbjct: 117 DTPVKVVINEYVDIARAFFPEGREASFVNAVLDHMAREAKPE 158 >gi|330505151|ref|YP_004382020.1| transcription antitermination protein NusB [Pseudomonas mendocina NK-01] gi|328919437|gb|AEB60268.1| transcription antitermination protein NusB [Pseudomonas mendocina NK-01] Length = 159 Score = 174 bits (442), Expect = 3e-42, Method: Composition-based stats. Identities = 48/170 (28%), Positives = 76/170 (44%), Gaps = 21/170 (12%) Query: 1 MTIQDNKKDLKLSHR-----RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTEL 55 M+ N + K R AR A+QALY I G EI +++ Sbjct: 1 MSNSGNGQPAKKGPSGKILARREARTLAMQALYSWHIAGQPLNEIEAQFR---------- 50 Query: 56 DVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLEL 115 V++ + VD +F I+HGV +K +D + L +D + +ILR EL Sbjct: 51 -VDNDFSKVDGAYFHEILHGVPRQKTELDGAFTPLLDR--PLEEIDPVELAILRLSTYEL 107 Query: 116 IECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVS---RKEEIKRS 162 VP +V+I+E + +A F D KF+N +LDK++ R E+ + Sbjct: 108 KNRVDVPYKVVINEGIELAKVFGATDGHKFVNGILDKLAPTLRAAEVNAN 157 >gi|85715455|ref|ZP_01046436.1| transcription antitermination protein NusB [Nitrobacter sp. Nb-311A] gi|85697650|gb|EAQ35526.1| transcription antitermination protein NusB [Nitrobacter sp. Nb-311A] Length = 160 Score = 174 bits (442), Expect = 4e-42, Method: Composition-based stats. Identities = 56/146 (38%), Positives = 90/146 (61%), Gaps = 3/146 (2%) Query: 11 KLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFR 70 + ++RRG ARLAAVQALYQ++I G ++ +E++++ + E D YL + +FR Sbjct: 10 RKANRRGAARLAAVQALYQMEISGAGVNDVFAEFDSHWLGNEVEGD---RYLPAEAAFFR 66 Query: 71 VIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEY 130 ++ GV+ + ID LI L++ W R+ IL ++LRAG EL +P V++SEY Sbjct: 67 DVVAGVVRDQVRIDPLIDDALSKGWPLKRIAAILRAVLRAGSYELEHRKDIPARVVVSEY 126 Query: 131 VCIAHDFFYGDEPKFINAVLDKVSRK 156 V +AH F +E +NAVLD+++R+ Sbjct: 127 VDVAHAFVENEEAGMVNAVLDQIARR 152 >gi|90410900|ref|ZP_01218914.1| transcription antitermination protein NusB [Photobacterium profundum 3TCK] gi|90328113|gb|EAS44424.1| transcription antitermination protein NusB [Photobacterium profundum 3TCK] Length = 155 Score = 174 bits (442), Expect = 4e-42, Method: Composition-based stats. Identities = 43/155 (27%), Positives = 76/155 (49%), Gaps = 6/155 (3%) Query: 9 DLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESV---YLHVD 65 ++K + RR AR A+QA+Y I + EI ++ + + E ++ H D Sbjct: 4 NVKPAARRN-ARHFAIQAIYSWQITKGNVAEIEQQFLSDDKFEEEEHQADAPSLAAPHTD 62 Query: 66 LEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEV 125 L +F +++GV+ Q +D + L+ LD + ++LR + E+ + VP +V Sbjct: 63 LNYFHDLLNGVVQNHQELDSKMRPYLSR--PLQDLDQMELALLRLAMYEMTKRDDVPYKV 120 Query: 126 IISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIK 160 +I+E + +A F D KF+N VLDK + K Sbjct: 121 VINEAIELAKLFGAEDSHKFVNGVLDKAAPTLRKK 155 >gi|58040838|ref|YP_192802.1| NusB family protein [Gluconobacter oxydans 621H] gi|81556897|sp|Q5FNA1|NUSB_GLUOX RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|58003252|gb|AAW62146.1| NusB family protein [Gluconobacter oxydans 621H] Length = 160 Score = 174 bits (441), Expect = 5e-42, Method: Composition-based stats. Identities = 60/158 (37%), Positives = 89/158 (56%), Gaps = 2/158 (1%) Query: 1 MTIQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESV 60 MT+ D R IAR+AAVQAL+Q + G + +IS++ +R + T + Sbjct: 1 MTVTDAPSANPTRRSRTIARVAAVQALFQCEQSGDTAETVISQFIRHRRISSTASFDDGH 60 Query: 61 YLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHS 120 DL+ F+ I+ GV R+ ID +S L E+W RLD +L ++LRA V E+ Sbjct: 61 IPDADLKLFQEIVLGVTRRQDDIDAKLSDVLPEQWPLPRLDPVLRALLRAAVFEI--GTD 118 Query: 121 VPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEE 158 P +II+EY+ +AH FF GDEPK +N +LD +SR+ Sbjct: 119 TPDRIIINEYLDVAHGFFSGDEPKMVNGILDTLSRRAN 156 >gi|16125609|ref|NP_420173.1| transcription antitermination protein NusB [Caulobacter crescentus CB15] gi|221234359|ref|YP_002516795.1| transcription antitermination protein NusB [Caulobacter crescentus NA1000] gi|22095966|sp|Q9A8J3|NUSB_CAUCR RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|254772622|sp|B8H535|NUSB_CAUCN RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|13422711|gb|AAK23341.1| N utilization substance protein B [Caulobacter crescentus CB15] gi|220963531|gb|ACL94887.1| N utilization substance protein B [Caulobacter crescentus NA1000] Length = 149 Score = 173 bits (440), Expect = 6e-42, Method: Composition-based stats. Identities = 57/143 (39%), Positives = 76/143 (53%), Gaps = 3/143 (2%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 R +ARLAAVQALYQ+++ G +I E+ +RF D E + D +F + G Sbjct: 9 RSVARLAAVQALYQMEVSGAGVDSVIREFGEHRFDRDVEGEQ---LAAADETFFADLARG 65 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135 V+ + ID I L W RLD ++LRAG EL+ VP EV+I+EYV IA Sbjct: 66 VVTNQAKIDQGIVKRLASGWRLERLDATARAVLRAGAFELMYRSDVPTEVVINEYVEIAK 125 Query: 136 DFFYGDEPKFINAVLDKVSRKEE 158 FF G E FIN LD ++R Sbjct: 126 SFFEGPESGFINGALDAIARDAR 148 >gi|146276474|ref|YP_001166633.1| NusB antitermination factor [Rhodobacter sphaeroides ATCC 17025] gi|145554715|gb|ABP69328.1| NusB antitermination factor [Rhodobacter sphaeroides ATCC 17025] Length = 157 Score = 173 bits (440), Expect = 6e-42, Method: Composition-based stats. Identities = 59/161 (36%), Positives = 93/161 (57%), Gaps = 10/161 (6%) Query: 1 MTIQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESV 60 M+++ +K+ +K +RL AVQAL+Q++ G + ++ E+ET+RF A E D Sbjct: 1 MSVKPDKRQMK-----SASRLYAVQALFQMECSGQTVEQVAREFETHRFGAIYEGDE--- 52 Query: 61 YLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHS 120 D FR I+ G ++R+ ID L L KW R+D ++ ++ RA EL+E Sbjct: 53 MAEGDARSFRSIVSGAVNRQAGIDQLTDRALVAKWPIDRIDPVIRALFRAAGSELLES-D 111 Query: 121 VPVEVIISEYVCIAHDFF-YGDEPKFINAVLDKVSRKEEIK 160 P +V+I+E+V IA FF G EPKF+NAVLD ++R+ + Sbjct: 112 TPPKVVINEFVDIAKAFFPDGREPKFVNAVLDHMAREARPE 152 >gi|54307996|ref|YP_129016.1| transcription antitermination protein NusB [Photobacterium profundum SS9] gi|81615463|sp|Q6LU11|NUSB_PHOPR RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|46912422|emb|CAG19214.1| Putative NusB protein [Photobacterium profundum SS9] Length = 151 Score = 173 bits (440), Expect = 7e-42, Method: Composition-based stats. Identities = 44/154 (28%), Positives = 76/154 (49%), Gaps = 6/154 (3%) Query: 10 LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYL---HVDL 66 +K + RR AR A+QA+Y I + EI ++ + + E ++ L H DL Sbjct: 1 MKPAARRN-ARHFAIQAIYSWQITKGNVAEIEQQFLSDDKFEEEEHQADAPILAAPHTDL 59 Query: 67 EWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVI 126 +F +++GV+ Q +D + L+ LD + ++LR + E+ + VP +V+ Sbjct: 60 NYFHDLLNGVVQNHQELDSKMRPYLSR--PLQDLDQMELALLRLAMYEMTKREDVPYKVV 117 Query: 127 ISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIK 160 I+E + +A F D KF+N VLDK + K Sbjct: 118 INEAIELAKIFGAEDSHKFVNGVLDKAAPTLRKK 151 >gi|213969286|ref|ZP_03397424.1| transcription antitermination protein NusB [Pseudomonas syringae pv. tomato T1] gi|301381790|ref|ZP_07230208.1| transcription antitermination protein NusB [Pseudomonas syringae pv. tomato Max13] gi|302061010|ref|ZP_07252551.1| transcription antitermination protein NusB [Pseudomonas syringae pv. tomato K40] gi|302130538|ref|ZP_07256528.1| transcription antitermination protein NusB [Pseudomonas syringae pv. tomato NCPPB 1108] gi|213925964|gb|EEB59521.1| transcription antitermination protein NusB [Pseudomonas syringae pv. tomato T1] gi|330964918|gb|EGH65178.1| transcription antitermination protein NusB [Pseudomonas syringae pv. actinidiae str. M302091] Length = 165 Score = 173 bits (440), Expect = 7e-42, Method: Composition-based stats. Identities = 55/169 (32%), Positives = 86/169 (50%), Gaps = 23/169 (13%) Query: 2 TIQDNKKDLK-------LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTE 54 T Q N +D K S +R AR A QALYQ + G + EI +++ Sbjct: 6 TDQFNPRDAKSPEIAKGKSAKRREARQMATQALYQRHMAGHALNEIEAQFR--------- 56 Query: 55 LDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLE 114 V++ + +VD +FR ++HGV + ID ++ CL + LD I +ILR E Sbjct: 57 --VDNDFSNVDGTYFRELLHGVATNQTEIDTALTPCLD--LTIEELDPIELAILRLSTFE 112 Query: 115 LIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVS---RKEEIK 160 L++ VP V+I+E + +A + D KF+N VLDK++ R+ E+K Sbjct: 113 LLKRIDVPYRVVINEGIELAKVYGSTDGHKFVNGVLDKLAPRLREVEVK 161 >gi|330812010|ref|YP_004356472.1| transcription antitermination protein NusB [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|327380118|gb|AEA71468.1| transcription antitermination protein NusB [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 166 Score = 173 bits (439), Expect = 7e-42, Method: Composition-based stats. Identities = 53/170 (31%), Positives = 84/170 (49%), Gaps = 24/170 (14%) Query: 2 TIQDNKKDLKLSH--------RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADT 53 + + N +D K + +R AR A QALYQ + S EI +++ Sbjct: 6 SDRFNPRDPKPADAGKPSKSVKRREARQLATQALYQWHMAKQSLNEIEAQFR-------- 57 Query: 54 ELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVL 113 V++ + VD +FR I+HGV K ID ++ CL + LD + ++LR Sbjct: 58 ---VDNDFSDVDGAYFREILHGVPQFKTEIDTALTPCLD--LTIEELDPVELAVLRLSTW 112 Query: 114 ELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVS---RKEEIK 160 EL++ VP V+I+E + +A F D KF+N VLDK++ R+ E+K Sbjct: 113 ELLKRVDVPYRVVINEGIELAKVFGSTDGHKFVNGVLDKLAPRLREAEVK 162 >gi|197105131|ref|YP_002130508.1| N utilization substance protein B [Phenylobacterium zucineum HLK1] gi|196478551|gb|ACG78079.1| N utilization substance protein B [Phenylobacterium zucineum HLK1] Length = 149 Score = 173 bits (439), Expect = 7e-42, Method: Composition-based stats. Identities = 56/144 (38%), Positives = 77/144 (53%), Gaps = 3/144 (2%) Query: 13 SHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVI 72 R +ARLAAVQALYQ+++ +I E+ +RF D E + D +F + Sbjct: 5 RASRSVARLAAVQALYQMEVSSTGVEAVIREFSDHRFDRDVEGE---TLASADEAFFADL 61 Query: 73 IHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVC 132 + GV+ ++ ID I L + W RLD + +ILRAG EL+ VP EV I EYV Sbjct: 62 VRGVVREQKPIDAAIVKRLAQGWRLERLDATVRAILRAGAFELMHRSDVPTEVAIDEYVE 121 Query: 133 IAHDFFYGDEPKFINAVLDKVSRK 156 + FF G EP F+N LD V+R Sbjct: 122 LTKSFFEGPEPGFVNGALDGVARD 145 >gi|330953122|gb|EGH53382.1| transcription antitermination protein NusB [Pseudomonas syringae Cit 7] Length = 165 Score = 173 bits (439), Expect = 8e-42, Method: Composition-based stats. Identities = 55/169 (32%), Positives = 86/169 (50%), Gaps = 23/169 (13%) Query: 2 TIQDNKKDLK-------LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTE 54 T Q N +D K S +R AR A QALYQ + G + EI +++ Sbjct: 6 TDQFNPRDAKSPEAAKGKSAKRREARQMATQALYQRHMAGHALNEIEAQFR--------- 56 Query: 55 LDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLE 114 V++ + +VD +FR ++HGV + ID +S CL + LD I ++LR E Sbjct: 57 --VDNDFSNVDGPYFRELLHGVATNQTEIDAALSPCLD--LTIEELDPIELAVLRLSTFE 112 Query: 115 LIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVS---RKEEIK 160 L++ VP V+I+E + +A + D KF+N VLDK++ R+ E+K Sbjct: 113 LLKRIDVPYRVVINEGIELAKVYGSTDGHKFVNGVLDKLAPRLREVEVK 161 >gi|148255993|ref|YP_001240578.1| transcription antitermination protein NusB [Bradyrhizobium sp. BTAi1] gi|166918804|sp|A5EKH8|NUSB_BRASB RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|146408166|gb|ABQ36672.1| NusB antitermination factor [Bradyrhizobium sp. BTAi1] Length = 169 Score = 173 bits (439), Expect = 9e-42, Method: Composition-based stats. Identities = 59/158 (37%), Positives = 96/158 (60%), Gaps = 3/158 (1%) Query: 7 KKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDL 66 + + + ++RRG ARLAAVQALYQ+DI G ++++E+E++ ++ E + YL + Sbjct: 14 RANDRKANRRGAARLAAVQALYQMDIAGAGINDVLAEFESHWLGSEVEGEQ---YLPAEA 70 Query: 67 EWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVI 126 +FR I+ GV+ + ID ++ + L W R++ IL ++LRAG EL VP +V+ Sbjct: 71 AFFRDIVSGVVRDQTKIDPVLDTALERGWPLQRIEAILRAVLRAGAYELERRKDVPAKVV 130 Query: 127 ISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRSGC 164 +SEYV IAH F DE +NAVL++++R+ G Sbjct: 131 VSEYVDIAHAFVERDETGMVNAVLEQLARQYRADEMGP 168 >gi|330877563|gb|EGH11712.1| transcription antitermination protein NusB [Pseudomonas syringae pv. morsprunorum str. M302280PT] Length = 165 Score = 173 bits (439), Expect = 9e-42, Method: Composition-based stats. Identities = 54/169 (31%), Positives = 86/169 (50%), Gaps = 23/169 (13%) Query: 2 TIQDNKKDLK-------LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTE 54 T Q N +D K S +R AR A QALYQ + G + +EI +++ Sbjct: 6 TDQFNPRDAKSPEIAKGKSAKRREARQMATQALYQRHMAGHALSEIEAQFR--------- 56 Query: 55 LDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLE 114 V++ + +VD +F ++HGV + ID ++ CL + LD I +ILR E Sbjct: 57 --VDNDFSNVDGTYFHELLHGVATNQTEIDTALTPCLD--LTIEELDPIELAILRLSTFE 112 Query: 115 LIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVS---RKEEIK 160 L++ VP V+I+E + +A + D KF+N VLDK++ R+ E+K Sbjct: 113 LLKRIDVPYRVVINEGIELAKVYGSTDGHKFVNGVLDKLAPRLREVEVK 161 >gi|66047685|ref|YP_237526.1| transcription antitermination protein NusB [Pseudomonas syringae pv. syringae B728a] gi|75500475|sp|Q4ZMY4|NUSB_PSEU2 RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|63258392|gb|AAY39488.1| Antitermination protein NusB [Pseudomonas syringae pv. syringae B728a] Length = 165 Score = 173 bits (439), Expect = 9e-42, Method: Composition-based stats. Identities = 55/169 (32%), Positives = 85/169 (50%), Gaps = 23/169 (13%) Query: 2 TIQDNKKDLK-------LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTE 54 T Q N +D K S +R AR A QALYQ + G + EI +++ Sbjct: 6 TDQFNPRDAKSPEIAKGKSAKRREARQMATQALYQRHMAGHALNEIEAQFR--------- 56 Query: 55 LDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLE 114 V++ + +VD +FR ++HGV + ID + CL + LD I +ILR E Sbjct: 57 --VDNDFSNVDGTYFRELLHGVATNQTEIDTALKPCLD--LTIEELDPIELAILRLSTFE 112 Query: 115 LIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVS---RKEEIK 160 L++ VP V+I+E + +A + D KF+N VLDK++ R+ E+K Sbjct: 113 LLKRIDVPYRVVINEGIELAKVYGSTDGHKFVNGVLDKLAPRLREVEVK 161 >gi|149909343|ref|ZP_01897999.1| transcription antitermination protein NusB [Moritella sp. PE36] gi|149807660|gb|EDM67608.1| transcription antitermination protein NusB [Moritella sp. PE36] Length = 140 Score = 173 bits (439), Expect = 9e-42, Method: Composition-based stats. Identities = 45/151 (29%), Positives = 75/151 (49%), Gaps = 14/151 (9%) Query: 10 LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF 69 +K S R AR A QA+YQ + + I ++ T + + D +F Sbjct: 1 MKPSE-RSKARQFATQAIYQWQMTQETVANIEHQFVT-----------DQDFSGTDATYF 48 Query: 70 RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISE 129 R ++ GV +D L+S L+ + LD++ +ILR EL++ VP +V+I+E Sbjct: 49 RELVLGVSLNSAELDELMSPFLSR--PLNDLDLVEKAILRLSTFELLKRQDVPYKVVINE 106 Query: 130 YVCIAHDFFYGDEPKFINAVLDKVSRKEEIK 160 + +A DF D KF+N VLDK+ K +++ Sbjct: 107 SIELAKDFGAEDSHKFVNGVLDKIVSKLQLR 137 >gi|330969737|gb|EGH69803.1| transcription antitermination protein NusB [Pseudomonas syringae pv. aceris str. M302273PT] Length = 165 Score = 172 bits (438), Expect = 9e-42, Method: Composition-based stats. Identities = 55/169 (32%), Positives = 85/169 (50%), Gaps = 23/169 (13%) Query: 2 TIQDNKKDLK-------LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTE 54 T Q N +D K S +R AR A QALYQ + G + EI +++ Sbjct: 6 TDQFNPRDAKSPEAAKGKSAKRREARQMATQALYQRHMAGHALNEIEAQFR--------- 56 Query: 55 LDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLE 114 V++ + +VD +FR ++HGV + ID + CL + LD I +ILR E Sbjct: 57 --VDNDFSNVDGTYFRELLHGVATNQTEIDTALKPCLD--LTIEELDPIELAILRLSTFE 112 Query: 115 LIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVS---RKEEIK 160 L++ VP V+I+E + +A + D KF+N VLDK++ R+ E+K Sbjct: 113 LLKRIDVPYRVVINEGIELAKVYGSTDGHKFVNGVLDKLAPRLREVEVK 161 >gi|75675914|ref|YP_318335.1| transcription antitermination protein NusB [Nitrobacter winogradskyi Nb-255] gi|119390791|sp|Q3SRV8|NUSB_NITWN RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|74420784|gb|ABA04983.1| NusB antitermination factor [Nitrobacter winogradskyi Nb-255] Length = 161 Score = 172 bits (438), Expect = 9e-42, Method: Composition-based stats. Identities = 58/146 (39%), Positives = 90/146 (61%), Gaps = 3/146 (2%) Query: 11 KLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFR 70 + ++RRG ARLAAVQALYQ++I G ++ +E++++ + E D YL + +FR Sbjct: 10 RKANRRGAARLAAVQALYQMEIGGAGINDVFAEFDSHWLGNEVEGD---RYLPAEAAFFR 66 Query: 71 VIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEY 130 ++ GV+ + ID LI L++ W R+ IL ++LRAG EL VP V++SEY Sbjct: 67 DVVAGVVRDQVRIDPLIDDALSKSWPLKRVAAILRAVLRAGSYELEHRKDVPARVVVSEY 126 Query: 131 VCIAHDFFYGDEPKFINAVLDKVSRK 156 V +AH F DE +NAVLD+++R+ Sbjct: 127 VDVAHAFVEKDEAGMVNAVLDQIARR 152 >gi|167623143|ref|YP_001673437.1| transcription antitermination protein NusB [Shewanella halifaxensis HAW-EB4] gi|189035905|sp|B0TJZ1|NUSB_SHEHH RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|167353165|gb|ABZ75778.1| NusB antitermination factor [Shewanella halifaxensis HAW-EB4] Length = 135 Score = 172 bits (438), Expect = 1e-41, Method: Composition-based stats. Identities = 46/149 (30%), Positives = 72/149 (48%), Gaps = 14/149 (9%) Query: 10 LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF 69 +K S RR AR AVQA+Y + G + ++ E+ T E VD+ +F Sbjct: 1 MKPSERR-KARRLAVQAIYSWQLSGNNIADVEHEFLT-----------EQDVAGVDIAYF 48 Query: 70 RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISE 129 R ++ GV +K +D LI+ LT +D + +I+R EL VP +V I+E Sbjct: 49 RELLGGVATKKSQLDELITPFLTR--PLDEVDPVEKAIVRIATYELTFRKDVPYKVAINE 106 Query: 130 YVCIAHDFFYGDEPKFINAVLDKVSRKEE 158 + +A F D KF+N +LDK+ + Sbjct: 107 AIELAKAFGAEDGHKFVNGILDKLVARNR 135 >gi|127512123|ref|YP_001093320.1| transcription antitermination protein NusB [Shewanella loihica PV-4] gi|166215717|sp|A3QC63|NUSB_SHELP RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|126637418|gb|ABO23061.1| NusB antitermination factor [Shewanella loihica PV-4] Length = 134 Score = 172 bits (438), Expect = 1e-41, Method: Composition-based stats. Identities = 45/148 (30%), Positives = 69/148 (46%), Gaps = 14/148 (9%) Query: 10 LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF 69 +K S RR AR AVQA+Y + G + ++ E+ T E VD+ +F Sbjct: 1 MKPSERR-KARRLAVQAIYSWQLSGNNVADVEHEFLT-----------EQKIDGVDVSYF 48 Query: 70 RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISE 129 R ++ G + +D LI L F + I ++LR EL VP +V I+E Sbjct: 49 RELLSGTTTKSAQLDELIMPHLER--PFDEVSPIEKAVLRIATYELTFRKDVPYKVAINE 106 Query: 130 YVCIAHDFFYGDEPKFINAVLDKVSRKE 157 + +A F D KF+N +LDK+ K+ Sbjct: 107 AIELAKAFGAEDGHKFVNGILDKIVAKK 134 >gi|295689070|ref|YP_003592763.1| Nusb antitermination factor [Caulobacter segnis ATCC 21756] gi|295430973|gb|ADG10145.1| NusB antitermination factor [Caulobacter segnis ATCC 21756] Length = 149 Score = 172 bits (438), Expect = 1e-41, Method: Composition-based stats. Identities = 55/147 (37%), Positives = 77/147 (52%), Gaps = 3/147 (2%) Query: 12 LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71 + R +ARLAA+QALYQ+++ G +I E+ +RF D E + D +F Sbjct: 5 RTQPRSVARLAAIQALYQMEVSGAGVDSVIREFSEHRFDRDVEGE---RLAAADETFFAE 61 Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131 + GV+ + +D I L W RLD ++LRAG EL+ VP EV+I+EYV Sbjct: 62 LAKGVVAHQAKVDQGIVKRLASGWRLERLDATARAVLRAGAYELMYRPDVPTEVVINEYV 121 Query: 132 CIAHDFFYGDEPKFINAVLDKVSRKEE 158 IA FF G E FIN LD ++R Sbjct: 122 EIAKSFFEGPEAGFINGALDAIARDAR 148 >gi|126175357|ref|YP_001051506.1| transcription antitermination protein NusB [Shewanella baltica OS155] gi|146293868|ref|YP_001184292.1| transcription antitermination protein NusB [Shewanella putrefaciens CN-32] gi|153001667|ref|YP_001367348.1| transcription antitermination protein NusB [Shewanella baltica OS185] gi|160876405|ref|YP_001555721.1| transcription antitermination protein NusB [Shewanella baltica OS195] gi|217972400|ref|YP_002357151.1| transcription antitermination protein NusB [Shewanella baltica OS223] gi|304410187|ref|ZP_07391806.1| NusB antitermination factor [Shewanella baltica OS183] gi|307302102|ref|ZP_07581860.1| NusB antitermination factor [Shewanella baltica BA175] gi|166215715|sp|A3D7C4|NUSB_SHEB5 RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|166215716|sp|A6WR46|NUSB_SHEB8 RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|166215718|sp|A4Y960|NUSB_SHEPC RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|189035904|sp|A9KYJ0|NUSB_SHEB9 RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|254772654|sp|B8E6W7|NUSB_SHEB2 RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|125998562|gb|ABN62637.1| NusB antitermination factor [Shewanella baltica OS155] gi|145565558|gb|ABP76493.1| NusB antitermination factor [Shewanella putrefaciens CN-32] gi|151366285|gb|ABS09285.1| NusB antitermination factor [Shewanella baltica OS185] gi|160861927|gb|ABX50461.1| NusB antitermination factor [Shewanella baltica OS195] gi|217497535|gb|ACK45728.1| NusB antitermination factor [Shewanella baltica OS223] gi|304351596|gb|EFM15995.1| NusB antitermination factor [Shewanella baltica OS183] gi|306914140|gb|EFN44561.1| NusB antitermination factor [Shewanella baltica BA175] gi|315268595|gb|ADT95448.1| NusB antitermination factor [Shewanella baltica OS678] gi|319427240|gb|ADV55314.1| NusB antitermination factor [Shewanella putrefaciens 200] Length = 134 Score = 172 bits (438), Expect = 1e-41, Method: Composition-based stats. Identities = 46/148 (31%), Positives = 70/148 (47%), Gaps = 15/148 (10%) Query: 10 LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF 69 +K S RR AR AVQA+Y + G + ++ E+ T E VD+ +F Sbjct: 1 MKPSERR-KARRLAVQAIYSWQLSGNNIADVEHEFLT-----------EQSLDGVDVAYF 48 Query: 70 RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISE 129 R + GV +K +D LI L + + +I+R EL VP +V I+E Sbjct: 49 RELFSGVATKKTQLDELIIPHLER--PIDEVSPVEKAIVRLATYELTFRKDVPYKVAINE 106 Query: 130 YVCIAHDFFYGDEPKFINAVLDK-VSRK 156 + +A F + KF+N +LDK V+RK Sbjct: 107 AIELAKAFGADESHKFVNGLLDKLVARK 134 >gi|294141965|ref|YP_003557943.1| N utilization substance protein B [Shewanella violacea DSS12] gi|293328434|dbj|BAJ03165.1| N utilization substance protein B [Shewanella violacea DSS12] Length = 134 Score = 172 bits (438), Expect = 1e-41, Method: Composition-based stats. Identities = 44/148 (29%), Positives = 69/148 (46%), Gaps = 14/148 (9%) Query: 10 LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF 69 +K S RR AR AVQA+Y + G + ++ E+ T E +D+ +F Sbjct: 1 MKPSERR-KARRLAVQAIYSWQLSGNNIADVEHEFLT-----------EQKIDGIDVAYF 48 Query: 70 RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISE 129 R + G + ID LI + F+ + I +ILR EL VP +V I+E Sbjct: 49 RELFTGTATKHAQIDELIIPHVER--PFNEVSPIEKAILRMATYELTFRKDVPYKVAINE 106 Query: 130 YVCIAHDFFYGDEPKFINAVLDKVSRKE 157 + +A F D KF+N +LDK+ ++ Sbjct: 107 AIELAKTFGAEDGHKFVNGILDKIVGRK 134 >gi|167647006|ref|YP_001684669.1| transcription antitermination protein NusB [Caulobacter sp. K31] gi|167349436|gb|ABZ72171.1| NusB antitermination factor [Caulobacter sp. K31] Length = 153 Score = 172 bits (437), Expect = 1e-41, Method: Composition-based stats. Identities = 52/141 (36%), Positives = 72/141 (51%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 R +ARLA VQALYQ++ G ++ E+ +RF D + D +F + G Sbjct: 10 RSVARLAVVQALYQMEQSGVGVDAVVREFAEHRFDRDVDGPDTDRLAAADETFFAELAKG 69 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135 V+ + +D I L W RLD ++LR+G EL+ VP EV+I EYV IA Sbjct: 70 VVAHQAAVDQAIVKRLASGWKLERLDATARAVLRSGAYELMHRPDVPTEVVIDEYVEIAK 129 Query: 136 DFFYGDEPKFINAVLDKVSRK 156 FF G E FIN LD ++R Sbjct: 130 SFFEGPESGFINGALDAIARD 150 >gi|284006399|emb|CBA71635.1| N utilization substance protein B [Arsenophonus nasoniae] Length = 137 Score = 172 bits (437), Expect = 1e-41, Method: Composition-based stats. Identities = 42/145 (28%), Positives = 70/145 (48%), Gaps = 14/145 (9%) Query: 10 LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF 69 +K + R AR AVQA+Y + G S ++ E+ T E +VD+ +F Sbjct: 1 MKPAA-RHRARECAVQAIYSWQLSGNSIADVEEEFLT-----------EQDMSNVDVTYF 48 Query: 70 RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISE 129 R +++GV +D ++ L+ + L + ++LR + EL + VP +V I+E Sbjct: 49 RELLNGVSTHVSELDKKMAPYLSRQ--LEELGQVEKAVLRLAMFELCYRNDVPYKVAINE 106 Query: 130 YVCIAHDFFYGDEPKFINAVLDKVS 154 + +A F + KFIN LDKV Sbjct: 107 AIELAKVFGAEESHKFINGALDKVV 131 >gi|120598061|ref|YP_962635.1| transcription antitermination protein NusB [Shewanella sp. W3-18-1] gi|166215720|sp|A1RHD6|NUSB_SHESW RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|120558154|gb|ABM24081.1| NusB antitermination factor [Shewanella sp. W3-18-1] Length = 134 Score = 172 bits (437), Expect = 1e-41, Method: Composition-based stats. Identities = 46/148 (31%), Positives = 70/148 (47%), Gaps = 15/148 (10%) Query: 10 LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF 69 +K S RR AR AVQA+Y + G + ++ E+ T E VD+ +F Sbjct: 1 MKPSERR-KARRLAVQAIYSWQLSGNNIADVEHEFLT-----------EQSLDGVDVAYF 48 Query: 70 RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISE 129 R + GV +K +D LI L + + +I+R EL VP +V I+E Sbjct: 49 RELFSGVATKKPQLDELIIPHLER--PIDEVSPVEKAIVRLATYELTFRKDVPYKVAINE 106 Query: 130 YVCIAHDFFYGDEPKFINAVLDK-VSRK 156 + +A F + KF+N +LDK V+RK Sbjct: 107 AIELAKAFGADESHKFVNGLLDKLVARK 134 >gi|325276599|ref|ZP_08142341.1| transcription antitermination protein NusB [Pseudomonas sp. TJI-51] gi|324098278|gb|EGB96382.1| transcription antitermination protein NusB [Pseudomonas sp. TJI-51] Length = 166 Score = 172 bits (436), Expect = 2e-41, Method: Composition-based stats. Identities = 56/172 (32%), Positives = 86/172 (50%), Gaps = 24/172 (13%) Query: 2 TIQDNKKDLKL--------SHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADT 53 + + N +D K S +R AR A QALYQ + S EI +++ Sbjct: 6 SDRFNPRDPKPADAGKPSKSAKRREARKLATQALYQWHMAQHSLNEIEAQFR-------- 57 Query: 54 ELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVL 113 V++ + VD +FR I+HGV K ID ++ C+T + LD + ++LR Sbjct: 58 ---VDNDFTDVDGAYFREILHGVPAVKDEIDKALAPCMT--IALDELDPVELAVLRLSTW 112 Query: 114 ELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVS---RKEEIKRS 162 ELI+ VP V+I+E V +A F D KF+N VLDK++ R+ E+K + Sbjct: 113 ELIKRVDVPYRVVINEGVELAKVFGATDGHKFVNGVLDKLAPSLREAEVKAN 164 >gi|192359459|ref|YP_001983152.1| transcription antitermination protein NusB [Cellvibrio japonicus Ueda107] gi|190685624|gb|ACE83302.1| transcription antitermination factor NusB [Cellvibrio japonicus Ueda107] Length = 168 Score = 172 bits (436), Expect = 2e-41, Method: Composition-based stats. Identities = 52/167 (31%), Positives = 82/167 (49%), Gaps = 15/167 (8%) Query: 1 MTIQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESV 60 MT ++ R +AR A+QALYQ + G S I +E+ T ++ Sbjct: 12 MTSSPGSDKSHIAATRRMARHYAMQALYQWHMAGSSLNAIEAEFRT-----------DND 60 Query: 61 YLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHS 120 VD+++F ++HGV ++ ++ L ++ S LD I ++LR EL Sbjct: 61 MSKVDVDYFHELLHGVPEQLSGLEEQFQPFLVDR-SLEELDAITRALLRMATYELKNRID 119 Query: 121 VPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRSGCVSA 167 VP +V+I+E V +A F D KFIN VLDK + E+ R+ V+A Sbjct: 120 VPYKVVINEAVSLAKKFGAEDSHKFINGVLDKTA---EVLRALEVNA 163 >gi|170725747|ref|YP_001759773.1| transcription antitermination protein NusB [Shewanella woodyi ATCC 51908] gi|238688678|sp|B1KJK5|NUSB_SHEWM RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|169811094|gb|ACA85678.1| NusB antitermination factor [Shewanella woodyi ATCC 51908] Length = 134 Score = 172 bits (436), Expect = 2e-41, Method: Composition-based stats. Identities = 42/148 (28%), Positives = 71/148 (47%), Gaps = 14/148 (9%) Query: 10 LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF 69 +K S RR AR AVQA+Y + G + ++ E+ T E +D+ +F Sbjct: 1 MKPSERR-KARRLAVQAIYSWQLSGNNIADVEHEFLT-----------EQKIDGIDVTYF 48 Query: 70 RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISE 129 R ++ G ++ ID LI+ + + + I ++LR EL VP +V I+E Sbjct: 49 RELLSGTATKQAQIDELITPHIER--PYDEVSPIEKAVLRLATYELTFRKDVPYKVAINE 106 Query: 130 YVCIAHDFFYGDEPKFINAVLDKVSRKE 157 + +A F D KF+N +LDK+ ++ Sbjct: 107 AIELAKAFGAEDGHKFVNGILDKIVGRK 134 >gi|330959944|gb|EGH60204.1| transcription antitermination protein NusB [Pseudomonas syringae pv. maculicola str. ES4326] Length = 165 Score = 171 bits (435), Expect = 2e-41, Method: Composition-based stats. Identities = 54/169 (31%), Positives = 86/169 (50%), Gaps = 23/169 (13%) Query: 2 TIQDNKKDLK-------LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTE 54 T Q N +D K S +R AR A QALYQ + G + EI +++ Sbjct: 6 TDQFNPRDAKSPEIAKGKSAKRREARQMATQALYQRHMAGHALNEIEAQFR--------- 56 Query: 55 LDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLE 114 V++ + +VD +FR ++HGV + ID ++ CL + LD I ++LR E Sbjct: 57 --VDNDFSNVDGTYFRELLHGVATNQAEIDAALTPCLD--LTIEELDPIELAVLRLSTFE 112 Query: 115 LIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVS---RKEEIK 160 L++ VP V+I+E + +A + D KF+N VLDK++ R+ E+K Sbjct: 113 LLKRIDVPYRVVINEGIELAKVYGSTDGHKFVNGVLDKLAPRLREVEVK 161 >gi|146341341|ref|YP_001206389.1| transcription antitermination protein NusB [Bradyrhizobium sp. ORS278] gi|166918805|sp|A4YW92|NUSB_BRASO RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|146194147|emb|CAL78168.1| antitermination factor (L factor) (N utilization substance protein B) [Bradyrhizobium sp. ORS278] Length = 168 Score = 171 bits (435), Expect = 2e-41, Method: Composition-based stats. Identities = 59/154 (38%), Positives = 93/154 (60%), Gaps = 3/154 (1%) Query: 11 KLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFR 70 + ++RRG ARLAAVQALYQ+DI G ++++E+E++ + E + YL + +FR Sbjct: 17 RKANRRGAARLAAVQALYQMDIAGAGINDVLAEFESHWLGNEVEGEQ---YLPAEAAFFR 73 Query: 71 VIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEY 130 I+ GV+ + ID ++ + L W R++ IL ++LRAG EL VP +V++SEY Sbjct: 74 DIVSGVVRDQTKIDPVLDTALERGWPLQRIEAILRAVLRAGAYELERRKDVPAKVVVSEY 133 Query: 131 VCIAHDFFYGDEPKFINAVLDKVSRKEEIKRSGC 164 V IAH F DE +NAVL++++R+ G Sbjct: 134 VDIAHAFVERDETGMVNAVLEQLARQYRGDEMGP 167 >gi|157960994|ref|YP_001501028.1| transcription antitermination protein NusB [Shewanella pealeana ATCC 700345] gi|189035906|sp|A8H1Q6|NUSB_SHEPA RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|157845994|gb|ABV86493.1| NusB antitermination factor [Shewanella pealeana ATCC 700345] Length = 135 Score = 171 bits (435), Expect = 2e-41, Method: Composition-based stats. Identities = 45/149 (30%), Positives = 73/149 (48%), Gaps = 14/149 (9%) Query: 10 LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF 69 +K S RR AR AVQA+Y + G + ++ E+ T E VD+ +F Sbjct: 1 MKPSERR-KARRLAVQAIYSWQLSGNNIADVEHEFLT-----------EQDVAGVDIAYF 48 Query: 70 RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISE 129 R ++ GV +K +D LI+ +T +D + +I+R EL VP +V I+E Sbjct: 49 RELLGGVATKKSQLDELITPFVTR--PLDEVDPVEKAIVRIATYELTFRKDVPYKVAINE 106 Query: 130 YVCIAHDFFYGDEPKFINAVLDKVSRKEE 158 + +A F D KF+N +LDK+ + + Sbjct: 107 AIELAKAFGAEDGHKFVNGILDKLVARNK 135 >gi|28867922|ref|NP_790541.1| N utilization substance protein B [Pseudomonas syringae pv. tomato str. DC3000] gi|32171596|sp|Q889Q5|NUSB_PSESM RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|28851158|gb|AAO54236.1| N utilization substance protein B [Pseudomonas syringae pv. tomato str. DC3000] Length = 165 Score = 171 bits (435), Expect = 2e-41, Method: Composition-based stats. Identities = 55/169 (32%), Positives = 86/169 (50%), Gaps = 23/169 (13%) Query: 2 TIQDNKKDLK-------LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTE 54 T Q N +D K S +R AR A QALYQ + G + EI +++ Sbjct: 6 TDQFNPRDAKSPEIAKGKSAKRREARQMATQALYQRHMAGHALNEIEAQFR--------- 56 Query: 55 LDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLE 114 V++ + +VD +FR ++HGV + ID ++ CL + LD I +ILR E Sbjct: 57 --VDNDFSNVDGTYFRELLHGVAINQTEIDTALTPCLD--LTIEELDPIELAILRLSTFE 112 Query: 115 LIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVS---RKEEIK 160 L++ VP V+I+E + +A + D KF+N VLDK++ R+ E+K Sbjct: 113 LLKRIDVPYRVVINEGIELAKVYGSTDGHKFVNGVLDKLAPRLREVEVK 161 >gi|104779852|ref|YP_606350.1| transcription antitermination protein NusB [Pseudomonas entomophila L48] gi|123079269|sp|Q1IFL9|NUSB_PSEE4 RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|95108839|emb|CAK13535.1| transcription termination, L factor (N utilization substance protein B) [Pseudomonas entomophila L48] Length = 166 Score = 171 bits (435), Expect = 3e-41, Method: Composition-based stats. Identities = 53/172 (30%), Positives = 82/172 (47%), Gaps = 24/172 (13%) Query: 2 TIQDNKKDLKL--------SHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADT 53 + + N +D K S +R AR A QALYQ + S E+ +++ Sbjct: 6 SDRFNPRDPKPADAGKPSKSAKRREARKLATQALYQWHMAKHSLNEVEAQFR-------- 57 Query: 54 ELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVL 113 V++ + VD +FR I+HGV +K ID + CL LD + S+LR Sbjct: 58 ---VDNDFSDVDGAYFREILHGVPAKKVEIDEALKPCLDT--PLEELDPVELSVLRLSAW 112 Query: 114 ELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVS---RKEEIKRS 162 E + VP V+I+E V +A F D KF+N VLDK++ R+ E++ + Sbjct: 113 EFMMRADVPYRVVINEGVELAKVFGATDGHKFVNGVLDKLAPRLREAEVRAN 164 >gi|212634192|ref|YP_002310717.1| transcription antitermination protein NusB [Shewanella piezotolerans WP3] gi|226738906|sp|B8CJN3|NUSB_SHEPW RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|212555676|gb|ACJ28130.1| Antitermination protein NusB [Shewanella piezotolerans WP3] Length = 135 Score = 171 bits (434), Expect = 3e-41, Method: Composition-based stats. Identities = 45/145 (31%), Positives = 70/145 (48%), Gaps = 14/145 (9%) Query: 10 LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF 69 +K S RR AR AVQA+Y + G + ++ E+ T E VD+ +F Sbjct: 1 MKPSERR-KARRLAVQAIYSWQLSGNNIADVEHEFLT-----------EQNVDGVDIAYF 48 Query: 70 RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISE 129 R ++ GV +K +D LI+ L +D + +I+R EL VP +V I+E Sbjct: 49 RELLGGVATKKSQLDELITPFLVR--PMDEVDPVEKAIVRLAAYELTFRKDVPYKVAINE 106 Query: 130 YVCIAHDFFYGDEPKFINAVLDKVS 154 + +A F D KF+N +LDK+ Sbjct: 107 AIELAKAFGAEDGHKFVNGILDKLV 131 >gi|110633492|ref|YP_673700.1| transcription antitermination protein NusB [Mesorhizobium sp. BNC1] gi|119390783|sp|Q11J90|NUSB_MESSB RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|110284476|gb|ABG62535.1| NusB antitermination factor [Chelativorans sp. BNC1] Length = 167 Score = 171 bits (434), Expect = 3e-41, Method: Composition-based stats. Identities = 72/167 (43%), Positives = 101/167 (60%), Gaps = 6/167 (3%) Query: 1 MTIQDNKK--DLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVE 58 MT + + +++RG ARLAAVQALYQ+D+ G E +EYE +R + + D+ Sbjct: 1 MTTPSKSPAENFRPANKRGAARLAAVQALYQMDVAGTGLLETTAEYEAFRLGKEIDGDL- 59 Query: 59 SVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIEC 118 Y D +WFR I+ GV++ + ID +I LTE W SRLD L +ILRAGV EL + Sbjct: 60 --YREADAQWFRAILSGVIENQTFIDPVIRQSLTEDWPLSRLDSTLRAILRAGVYELSKR 117 Query: 119 HSVPVEVIISEYVCIAHDF-FYGDEPKFINAVLDKVSRKEEIKRSGC 164 VPV V++SEY+ IA F +EPK +NAVLD+V+R+ + G Sbjct: 118 SDVPVPVVVSEYIDIAKAFYGEEEEPKLVNAVLDRVARRMRGEGKGK 164 >gi|163750010|ref|ZP_02157254.1| transcription antitermination protein NusB [Shewanella benthica KT99] gi|161330284|gb|EDQ01265.1| transcription antitermination protein NusB [Shewanella benthica KT99] Length = 134 Score = 171 bits (434), Expect = 3e-41, Method: Composition-based stats. Identities = 44/148 (29%), Positives = 69/148 (46%), Gaps = 14/148 (9%) Query: 10 LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF 69 +K S RR AR AVQA+Y + G + ++ E+ T E +D+ +F Sbjct: 1 MKPSERR-KARRLAVQAIYSWQLSGNNIADVEHEFLT-----------EQKIDGIDVAYF 48 Query: 70 RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISE 129 R + G + ID LI + F+ + I +ILR EL VP +V I+E Sbjct: 49 RELFTGTTTKSAQIDELIIPHVER--PFAEVSPIEKAILRMATYELTFRKDVPYKVAINE 106 Query: 130 YVCIAHDFFYGDEPKFINAVLDKVSRKE 157 + +A F D KF+N +LDK+ ++ Sbjct: 107 AIELAKTFGAEDGHKFVNGILDKIVGRK 134 >gi|163852577|ref|YP_001640620.1| transcription antitermination factor NusB [Methylobacterium extorquens PA1] gi|218531417|ref|YP_002422233.1| NusB antitermination factor [Methylobacterium chloromethanicum CM4] gi|240139911|ref|YP_002964388.1| transcription antitermination factor [Methylobacterium extorquens AM1] gi|254562335|ref|YP_003069430.1| transcription antitermination factor [Methylobacterium extorquens DM4] gi|163664182|gb|ABY31549.1| transcription antitermination factor NusB [Methylobacterium extorquens PA1] gi|218523720|gb|ACK84305.1| NusB antitermination factor [Methylobacterium chloromethanicum CM4] gi|240009885|gb|ACS41111.1| transcription antitermination factor [Methylobacterium extorquens AM1] gi|254269613|emb|CAX25584.1| transcription antitermination factor [Methylobacterium extorquens DM4] Length = 171 Score = 171 bits (433), Expect = 4e-41, Method: Composition-based stats. Identities = 55/168 (32%), Positives = 90/168 (53%), Gaps = 3/168 (1%) Query: 1 MTIQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESV 60 MT + R ARLA VQALY+++I E ++E+E + + + V Sbjct: 1 MTDPAATPAQPKPNARTGARLAVVQALYEMEISDKGVIEALAEFEAFWIGQEVDG---VV 57 Query: 61 YLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHS 120 + ++ +FR ++ G ++ ++ ID + + L + W RL+ +L +ILRAG EL+ Sbjct: 58 HPPAEIAFFRDVLRGAVEEQRAIDPKLDTALAKGWPLRRLEAVLRAILRAGAYELMFRRD 117 Query: 121 VPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRSGCVSAI 168 VP IS+YV +A+ F+ GDEP +NAVLD+V R+ G +A Sbjct: 118 VPARAAISQYVEVAYSFYGGDEPGMVNAVLDRVGREVRSTEFGIPAAP 165 >gi|126463172|ref|YP_001044286.1| NusB antitermination factor [Rhodobacter sphaeroides ATCC 17029] gi|221640214|ref|YP_002526476.1| NusB antitermination factor [Rhodobacter sphaeroides KD131] gi|126104836|gb|ABN77514.1| NusB antitermination factor [Rhodobacter sphaeroides ATCC 17029] gi|221160995|gb|ACM01975.1| NusB antitermination factor [Rhodobacter sphaeroides KD131] Length = 157 Score = 171 bits (433), Expect = 4e-41, Method: Composition-based stats. Identities = 57/161 (35%), Positives = 94/161 (58%), Gaps = 10/161 (6%) Query: 1 MTIQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESV 60 M+++ +++ +K +RL AVQAL+Q++ G + ++ E+ET+RF A E D Sbjct: 1 MSVKPDRRQMK-----SASRLYAVQALFQMETTGQTVEQVAREFETHRFGAVYEGDE--- 52 Query: 61 YLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHS 120 D + FR I+ G ++R+ ID + L KW R+D ++ ++ RA EL+E Sbjct: 53 MAEGDAKSFRAIVSGAVNRQAGIDQMTDRALVAKWPIDRIDPVIRALFRAAGSELLES-E 111 Query: 121 VPVEVIISEYVCIAHDFF-YGDEPKFINAVLDKVSRKEEIK 160 P +V+I+E+V IA FF G EPKF+NAVLD ++R+ + Sbjct: 112 TPPKVVINEFVDIAKAFFPEGREPKFVNAVLDHMAREARPE 152 >gi|77461236|ref|YP_350743.1| transcription antitermination protein NusB [Pseudomonas fluorescens Pf0-1] gi|119390800|sp|Q3K652|NUSB_PSEPF RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|77385239|gb|ABA76752.1| N utilization substance protein B [Pseudomonas fluorescens Pf0-1] Length = 166 Score = 171 bits (433), Expect = 4e-41, Method: Composition-based stats. Identities = 54/170 (31%), Positives = 84/170 (49%), Gaps = 24/170 (14%) Query: 2 TIQDNKKDLKL--------SHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADT 53 + + N +D K S +R AR A QALYQ + S EI +++ Sbjct: 6 SDRFNPRDPKPADAGKPSKSAKRREARQLATQALYQWHMARQSLNEIEAQFR-------- 57 Query: 54 ELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVL 113 V++ + VD +FR I+HGV K ID ++ CL + LD + ++LR Sbjct: 58 ---VDNDFTDVDGAYFREILHGVPQFKTEIDNALTPCLD--LAIEELDPVELAVLRLSTW 112 Query: 114 ELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVS---RKEEIK 160 EL++ VP V+I+E + +A F D KF+N VLDK++ R+ E+K Sbjct: 113 ELLKRVDVPYRVVINEGIELAKVFGSTDGHKFVNGVLDKLAPRLREAEVK 162 >gi|259416248|ref|ZP_05740168.1| transcription antitermination factor NusB [Silicibacter sp. TrichCH4B] gi|259347687|gb|EEW59464.1| transcription antitermination factor NusB [Silicibacter sp. TrichCH4B] Length = 164 Score = 171 bits (433), Expect = 4e-41, Method: Composition-based stats. Identities = 60/166 (36%), Positives = 91/166 (54%), Gaps = 10/166 (6%) Query: 1 MTIQDNKKD-----LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTEL 55 MT +D K + R ARL AVQAL+Q++ ST ++I E+E +RF A E Sbjct: 1 MTSKDAPKPGQKPGKNKTQARSAARLYAVQALFQMEQSDQSTNKVIVEFEDHRFGATYEG 60 Query: 56 DVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLEL 115 D Y D + FR +++ ++ + ID + L KW +R+D L ++ RA E Sbjct: 61 DE---YAEGDTKLFRKLVNDAVNYQAKIDQMTDRALVAKWPIARIDPTLRALFRAAGAEF 117 Query: 116 IECHSVPVEVIISEYVCIAHDFF-YGDEPKFINAVLDKVSRKEEIK 160 +E PV+V+I+EYV IA FF G E F+NAVLD ++R+ + + Sbjct: 118 VES-DTPVKVVINEYVDIARAFFPEGREASFVNAVLDHMAREAKPE 162 >gi|229592845|ref|YP_002874964.1| transcription antitermination protein NusB [Pseudomonas fluorescens SBW25] gi|259514879|sp|C3K2R8|NUSB_PSEFS RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|229364711|emb|CAY52674.1| putative N utilisation-related protein [Pseudomonas fluorescens SBW25] Length = 166 Score = 171 bits (433), Expect = 4e-41, Method: Composition-based stats. Identities = 50/170 (29%), Positives = 80/170 (47%), Gaps = 24/170 (14%) Query: 2 TIQDNKKDLKLS--------HRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADT 53 + N +D + + +R AR A QALYQ I G S EI +++ Sbjct: 6 SDNFNPRDPRPADAGKPSKNEKRRAARQLATQALYQRQIAGASLNEIEAQFR-------- 57 Query: 54 ELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVL 113 V++ + DL +F I+HGV ID ++ CL + LD + ++R Sbjct: 58 ---VDNDFTFADLPYFHDILHGVHAHLTEIDAALAPCLD--LTIDELDPVELCVMRLSAW 112 Query: 114 ELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVS---RKEEIK 160 EL+ VP V+I+E + +A + D KF+N VLDK++ R+ E+K Sbjct: 113 ELLYRVDVPYRVVINEGIELAKVYGSTDGHKFVNGVLDKLAPRLREAEVK 162 >gi|220934735|ref|YP_002513634.1| NusB antitermination factor [Thioalkalivibrio sp. HL-EbGR7] gi|219996045|gb|ACL72647.1| NusB antitermination factor [Thioalkalivibrio sp. HL-EbGR7] Length = 149 Score = 171 bits (433), Expect = 4e-41, Method: Composition-based stats. Identities = 51/159 (32%), Positives = 81/159 (50%), Gaps = 16/159 (10%) Query: 1 MTIQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESV 60 MT DN++ LSH R +R A+QALYQ + G +I+ +Y D EL+ Sbjct: 1 MTGPDNRR---LSHARRQSRRVAMQALYQWQLTGYHPKDILLQYRE-----DPELE---- 48 Query: 61 YLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHS 120 D ++FR ++ GV ++ +D L++ + S + LD + +ILR EL + Sbjct: 49 --KADADYFRELLLGVTEQVDELDELLAPQMDR--SVAELDPVERAILRLATFELKQRID 104 Query: 121 VPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEI 159 +P V+I+E V + F D KF+N VLDK+ R+ Sbjct: 105 IPYRVVINEAVELTKKFGATDAHKFVNGVLDKLGRQLRA 143 >gi|24374971|ref|NP_719014.1| transcription antitermination protein NusB [Shewanella oneidensis MR-1] gi|32171648|sp|Q8EBP4|NUSB_SHEON RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|24349697|gb|AAN56458.1|AE015783_1 N utilization substance protein B [Shewanella oneidensis MR-1] Length = 134 Score = 171 bits (433), Expect = 5e-41, Method: Composition-based stats. Identities = 46/148 (31%), Positives = 70/148 (47%), Gaps = 15/148 (10%) Query: 10 LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF 69 +K S RR AR AVQA+Y + G + ++ E+ T E VD+ +F Sbjct: 1 MKPSERR-KARRLAVQAIYSWQLSGNNIADVEHEFLT-----------EQSLDGVDVAYF 48 Query: 70 RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISE 129 R + GV +K +D LI L + + +I+R EL VP +V I+E Sbjct: 49 RELFAGVATKKTQLDELIIPHLDR--PIDEVSPVEKAIVRLAAYELTFRKDVPFKVAINE 106 Query: 130 YVCIAHDFFYGDEPKFINAVLDK-VSRK 156 + +A F + KF+N +LDK V+RK Sbjct: 107 AIELAKAFGADESHKFVNGLLDKLVARK 134 >gi|330830919|ref|YP_004393871.1| N utilization substance protein B [Aeromonas veronii B565] gi|328806055|gb|AEB51254.1| N utilization substance protein B [Aeromonas veronii B565] Length = 137 Score = 170 bits (432), Expect = 5e-41, Method: Composition-based stats. Identities = 44/146 (30%), Positives = 70/146 (47%), Gaps = 14/146 (9%) Query: 10 LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF 69 +K S RR AR A QA+YQ + + +I +++ ++ VDL +F Sbjct: 1 MKPSERR-KARHCATQAIYQWQMTKANVGDIEEQFK-----------IDQDTKGVDLNYF 48 Query: 70 RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISE 129 R ++ GV +D + + L+ +DM+ +ILR EL VP V+I+E Sbjct: 49 RDLLFGVALHCSELDKVFAPFLSR--PLEEVDMVDKAILRLATYELTRRDDVPPRVVINE 106 Query: 130 YVCIAHDFFYGDEPKFINAVLDKVSR 155 + +A F D KF+N VLDKV + Sbjct: 107 AIELAKAFAADDSHKFVNGVLDKVIK 132 >gi|254465261|ref|ZP_05078672.1| transcription antitermination factor NusB [Rhodobacterales bacterium Y4I] gi|206686169|gb|EDZ46651.1| transcription antitermination factor NusB [Rhodobacterales bacterium Y4I] Length = 160 Score = 170 bits (432), Expect = 5e-41, Method: Composition-based stats. Identities = 56/160 (35%), Positives = 89/160 (55%), Gaps = 6/160 (3%) Query: 1 MTIQDNKKDLK-LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVES 59 M+ QD++ + R ARL A+QAL+Q++ G + ++I E+E +RF A E D Sbjct: 1 MSTQDSRPKGNGKNQMRSAARLYALQALFQMEQSGQTFDQVIVEFEDHRFGAVYEGDE-- 58 Query: 60 VYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECH 119 D + FR ++ ++ + ID + L KW +R+D L ++ RA EL + Sbjct: 59 -MAEGDTKVFRKLVREAVNYQARIDQMTDRALVAKWPIARIDPTLRALFRAAGAELTQS- 116 Query: 120 SVPVEVIISEYVCIAHDFF-YGDEPKFINAVLDKVSRKEE 158 P +V+I+E+V IA FF G EPKF+NAVLD ++R+ Sbjct: 117 DTPPKVVINEFVDIARAFFPEGKEPKFVNAVLDHMAREAR 156 >gi|269103251|ref|ZP_06155948.1| transcription termination protein NusB [Photobacterium damselae subsp. damselae CIP 102761] gi|268163149|gb|EEZ41645.1| transcription termination protein NusB [Photobacterium damselae subsp. damselae CIP 102761] Length = 152 Score = 170 bits (432), Expect = 6e-41, Method: Composition-based stats. Identities = 44/148 (29%), Positives = 73/148 (49%), Gaps = 6/148 (4%) Query: 10 LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYL---HVDL 66 +K + RR AR AVQA+Y I +I + + + E E+ L H D+ Sbjct: 1 MKPAARRN-ARQFAVQAIYSWQITQGDIADIEQHFLSGDKFEEEEYQAEAPVLAAPHTDV 59 Query: 67 EWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVI 126 +FR + GV+ Q +D + L+ LD + ++LR + E+++ VP +V+ Sbjct: 60 NYFRDLFTGVVLNHQDLDSKMRPYLSR--PLQDLDQMELALLRLAMYEMVKREDVPFKVV 117 Query: 127 ISEYVCIAHDFFYGDEPKFINAVLDKVS 154 I+E + +A F D KF+N VLDK + Sbjct: 118 INEAIELAKLFGAEDSHKFVNGVLDKAA 145 >gi|117620704|ref|YP_857817.1| transcription antitermination factor NusB [Aeromonas hydrophila subsp. hydrophila ATCC 7966] gi|254772605|sp|A0KNG6|NUSB_AERHH RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|117562111|gb|ABK39059.1| transcription antitermination factor NusB [Aeromonas hydrophila subsp. hydrophila ATCC 7966] Length = 137 Score = 170 bits (432), Expect = 6e-41, Method: Composition-based stats. Identities = 44/146 (30%), Positives = 69/146 (47%), Gaps = 14/146 (9%) Query: 10 LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF 69 +K S RR AR A QA+YQ + + +I +++ ++ VDL +F Sbjct: 1 MKPSERR-KARHCATQAIYQWQMTKANVGDIEEQFK-----------IDQDTKGVDLNYF 48 Query: 70 RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISE 129 R ++ GV +D + + L+ +DM+ +ILR EL VP V I+E Sbjct: 49 RDLLFGVALHCNELDKVFAPFLSR--PLEEVDMVDKAILRLATYELTRRDDVPPRVAINE 106 Query: 130 YVCIAHDFFYGDEPKFINAVLDKVSR 155 + +A F D KF+N VLDKV + Sbjct: 107 AIELAKSFAADDSHKFVNGVLDKVIK 132 >gi|331018230|gb|EGH98286.1| transcription antitermination protein NusB [Pseudomonas syringae pv. lachrymans str. M302278PT] Length = 165 Score = 170 bits (431), Expect = 7e-41, Method: Composition-based stats. Identities = 56/169 (33%), Positives = 87/169 (51%), Gaps = 23/169 (13%) Query: 2 TIQDNKKDLK-------LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTE 54 T Q N +D K S +R AR A QALYQ + G + EI +++ Sbjct: 6 TDQFNPRDAKSPEIAKGKSAKRREARQMATQALYQRHMAGHALNEIEAQFR--------- 56 Query: 55 LDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLE 114 V++ + +VD +FR ++HGV + ID ++SCL + LD I +ILR E Sbjct: 57 --VDNDFSNVDGTYFRELLHGVAINQTEIDTALTSCLD--LTIEELDPIELAILRLSTFE 112 Query: 115 LIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVS---RKEEIK 160 L++ VP V+I+E + +A + D KF+N VLDK++ R+ E+K Sbjct: 113 LLKRIDVPYRVVINEGIELAKIYGSTDGHKFVNGVLDKLAPRLREVEVK 161 >gi|170719757|ref|YP_001747445.1| transcription antitermination protein NusB [Pseudomonas putida W619] gi|229620367|sp|B1J3F6|NUSB_PSEPW RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|169757760|gb|ACA71076.1| NusB antitermination factor [Pseudomonas putida W619] Length = 166 Score = 170 bits (431), Expect = 7e-41, Method: Composition-based stats. Identities = 54/172 (31%), Positives = 83/172 (48%), Gaps = 24/172 (13%) Query: 2 TIQDNKKDLKL--------SHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADT 53 + + N +D K S +R AR A QALYQ + S EI +++ Sbjct: 6 SDRFNPRDPKPADAGKPSKSAKRREARKLATQALYQWHMAQHSLNEIEAQFR-------- 57 Query: 54 ELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVL 113 V++ + VD +FR I+HGV K ID + C+ + LD + ++LR Sbjct: 58 ---VDNDFTDVDGAYFREILHGVPAIKSEIDSALKPCMD--IALEELDPVELAVLRLSTW 112 Query: 114 ELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVS---RKEEIKRS 162 E I+ VP V+I+E V +A F D KF+N VLDK++ R+ E+K + Sbjct: 113 EFIKRVDVPYRVVINEGVELAKVFGATDGHKFVNGVLDKLAPSLREAEVKAN 164 >gi|114562217|ref|YP_749730.1| transcription antitermination protein NusB [Shewanella frigidimarina NCIMB 400] gi|119390819|sp|Q086C3|NUSB_SHEFN RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|114333510|gb|ABI70892.1| NusB antitermination factor [Shewanella frigidimarina NCIMB 400] Length = 134 Score = 169 bits (430), Expect = 9e-41, Method: Composition-based stats. Identities = 44/146 (30%), Positives = 68/146 (46%), Gaps = 14/146 (9%) Query: 10 LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF 69 +K S RR AR AVQA+Y + ++ E+ T E VD+ +F Sbjct: 1 MKPSERR-KARRLAVQAIYSWQLSQNKVADVEHEFLT-----------EQNTDGVDVAYF 48 Query: 70 RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISE 129 R ++ GV + ID L+ L K F + + +I+R EL VP +V I+E Sbjct: 49 RELLTGVASKTSQIDELLKPHLDRK--FEEVSPVEKAIVRLATYELTFRKDVPFKVAINE 106 Query: 130 YVCIAHDFFYGDEPKFINAVLDKVSR 155 + +A F D KF+N +LDK+ + Sbjct: 107 GIELAKAFGAEDSHKFVNGLLDKLVK 132 >gi|296448765|ref|ZP_06890618.1| NusB antitermination factor [Methylosinus trichosporium OB3b] gi|296253723|gb|EFH00897.1| NusB antitermination factor [Methylosinus trichosporium OB3b] Length = 152 Score = 169 bits (429), Expect = 1e-40, Method: Composition-based stats. Identities = 57/149 (38%), Positives = 85/149 (57%), Gaps = 3/149 (2%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 R +RLA VQALYQ+++ G EI +E+E + + E D Y +L++FR I+ G Sbjct: 6 RSASRLAIVQALYQMEVAGKGLNEIYAEFEVHWIGREIEGDQ---YKPAELQFFRDIVKG 62 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135 V+D + ID + L W R++ ++ +ILRAG EL VPV+V+I EYV +A Sbjct: 63 VLDNQTPIDRALDQALQGGWPLQRIESVMRAILRAGAYELGFRRDVPVKVVIKEYVDVAG 122 Query: 136 DFFYGDEPKFINAVLDKVSRKEEIKRSGC 164 FF E INAVLD+++R+ + G Sbjct: 123 AFFGPTESGMINAVLDRLARQARPEHFGE 151 >gi|302383000|ref|YP_003818823.1| NusB antitermination factor [Brevundimonas subvibrioides ATCC 15264] gi|302193628|gb|ADL01200.1| NusB antitermination factor [Brevundimonas subvibrioides ATCC 15264] Length = 176 Score = 169 bits (429), Expect = 1e-40, Method: Composition-based stats. Identities = 57/150 (38%), Positives = 82/150 (54%), Gaps = 3/150 (2%) Query: 11 KLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFR 70 + R +ARLAAVQALYQ+++ G +I+E+ +RF AD E + D +F Sbjct: 29 RQRRARTVARLAAVQALYQMELAGEGVETVITEFSNHRFDADIEGEP---LAEADEAYFA 85 Query: 71 VIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEY 130 ++ GV+ ++ ID + + L W RLD L ++LR G EL VP E++I EY Sbjct: 86 DVVRGVIQSQREIDASVKARLASNWRLERLDATLRALLRCGAWELAHRTDVPKEIVIDEY 145 Query: 131 VCIAHDFFYGDEPKFINAVLDKVSRKEEIK 160 V +A FF E KF+NA LD V+R K Sbjct: 146 VELAKAFFDEAEAKFVNAALDGVARDVRPK 175 >gi|26987256|ref|NP_742681.1| transcription antitermination protein NusB [Pseudomonas putida KT2440] gi|148545803|ref|YP_001265905.1| transcription antitermination protein NusB [Pseudomonas putida F1] gi|167031580|ref|YP_001666811.1| transcription antitermination protein NusB [Pseudomonas putida GB-1] gi|32171603|sp|Q88QH5|NUSB_PSEPK RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|166215708|sp|A5VXW1|NUSB_PSEP1 RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|189035897|sp|B0KL71|NUSB_PSEPG RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|24981898|gb|AAN66145.1|AE016242_13 N utilization substance protein B [Pseudomonas putida KT2440] gi|148509861|gb|ABQ76721.1| NusB antitermination factor [Pseudomonas putida F1] gi|166858068|gb|ABY96475.1| NusB antitermination factor [Pseudomonas putida GB-1] gi|313496885|gb|ADR58251.1| NusB [Pseudomonas putida BIRD-1] Length = 166 Score = 169 bits (429), Expect = 1e-40, Method: Composition-based stats. Identities = 56/172 (32%), Positives = 85/172 (49%), Gaps = 24/172 (13%) Query: 2 TIQDNKKDLKL--------SHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADT 53 + + N +D K S +R AR A QALYQ + S EI +++ Sbjct: 6 SDRFNPRDPKPADAGKPSKSAKRREARKLATQALYQWHMAQHSLNEIEAQFR-------- 57 Query: 54 ELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVL 113 V++ + VD +FR I+HGV K ID + C+T + LD + ++LR Sbjct: 58 ---VDNDFTDVDGAYFREILHGVPAIKGEIDKALVPCMT--IALEELDPVELAVLRLSTW 112 Query: 114 ELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVS---RKEEIKRS 162 ELI+ VP V+I+E V +A F D KF+N VLDK++ R+ E+K + Sbjct: 113 ELIKRVDVPYRVVINEGVELAKVFGATDGHKFVNGVLDKLAPALREAEVKAN 164 >gi|91792506|ref|YP_562157.1| transcription antitermination protein NusB [Shewanella denitrificans OS217] gi|119390818|sp|Q12Q42|NUSB_SHEDO RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|91714508|gb|ABE54434.1| NusB antitermination factor [Shewanella denitrificans OS217] Length = 133 Score = 169 bits (429), Expect = 1e-40, Method: Composition-based stats. Identities = 45/147 (30%), Positives = 71/147 (48%), Gaps = 14/147 (9%) Query: 10 LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF 69 +K S RR AR AVQA+Y + + ++ E+ T E VD+ +F Sbjct: 1 MKPSERR-KARRLAVQAIYSWQLSKNNVADVEHEFIT-----------EQNIDGVDVAYF 48 Query: 70 RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISE 129 R ++ GV + + ID L+ L K F + + +I+R EL VP +V I+E Sbjct: 49 RELLAGVASKHEQIDDLLRPHLDRK--FEDVSPVEKAIVRLAGYELTFRKDVPYKVAINE 106 Query: 130 YVCIAHDFFYGDEPKFINAVLDKVSRK 156 + +A F D KF+N +LDK+ R+ Sbjct: 107 AIELAKAFGADDSHKFVNGLLDKLVRR 133 >gi|298529745|ref|ZP_07017148.1| NusB antitermination factor [Desulfonatronospira thiodismutans ASO3-1] gi|298511181|gb|EFI35084.1| NusB antitermination factor [Desulfonatronospira thiodismutans ASO3-1] Length = 157 Score = 169 bits (429), Expect = 1e-40, Method: Composition-based stats. Identities = 41/165 (24%), Positives = 75/165 (45%), Gaps = 9/165 (5%) Query: 3 IQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYL 62 + +K K +H R R A Q LY + + T I+ + ++ DT + Sbjct: 1 MTRHKPRTKTTHSRHAQREFAFQVLYSLHF-DQTGTHILDTFHHFKNDQDT-------AV 52 Query: 63 HVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVP 122 D+ + +I+GV + + +D I ++ W R+ M+ +I+R V E+I +P Sbjct: 53 QQDMSYALQLINGVRENLEELDAAIGRH-SQNWKVKRIAMVELTIMRLAVYEMIYREDIP 111 Query: 123 VEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRSGCVSA 167 V+V I+E + +A F + F+N +LD V+R G + Sbjct: 112 VKVGINEAIELAKTFGDNNSRNFVNGILDAVARDMRHGEPGTDAG 156 >gi|145298021|ref|YP_001140862.1| antitermination protein NusB [Aeromonas salmonicida subsp. salmonicida A449] gi|254772606|sp|A4SJP2|NUSB_AERS4 RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|142850793|gb|ABO89114.1| Antitermination protein NusB [Aeromonas salmonicida subsp. salmonicida A449] Length = 137 Score = 169 bits (428), Expect = 1e-40, Method: Composition-based stats. Identities = 44/146 (30%), Positives = 70/146 (47%), Gaps = 14/146 (9%) Query: 10 LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF 69 +K S RR AR A QA+YQ + + +I +++ ++ VDL +F Sbjct: 1 MKPSERR-KARHCATQAIYQWQMTRANVGDIEEQFK-----------IDQDTKGVDLNYF 48 Query: 70 RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISE 129 R ++ GV +D + + L+ +DM+ +ILR EL VP V+I+E Sbjct: 49 RDLLFGVALHCNELDKVFAPFLSR--PLEEVDMVDKAILRLATYELTRRDDVPPRVVINE 106 Query: 130 YVCIAHDFFYGDEPKFINAVLDKVSR 155 + +A F D KF+N VLDKV + Sbjct: 107 AIELAKAFAADDSHKFVNGVLDKVIK 132 >gi|219872292|ref|YP_002476667.1| transcription antitermination protein NusB [Haemophilus parasuis SH0165] gi|254772642|sp|B8F8R7|NUSB_HAEPS RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|219692496|gb|ACL33719.1| transcription antitermination protein N utilization substance B (NusB) [Haemophilus parasuis SH0165] Length = 137 Score = 169 bits (428), Expect = 1e-40, Method: Composition-based stats. Identities = 46/151 (30%), Positives = 71/151 (47%), Gaps = 14/151 (9%) Query: 10 LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF 69 +K+S RR AR AVQALY I S ++ + T + VD+ +F Sbjct: 1 MKVSPRRR-ARECAVQALYSWYISQNSIEQVELAFVT-----------DQDMQGVDMPYF 48 Query: 70 RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISE 129 R ++ G ++ ID ++ L + + LD I +ILR EL VP +V I+E Sbjct: 49 RKLLRGTVENVDVIDDILRPYLDR--ADNELDPIERTILRLAGYELKFELDVPYKVAINE 106 Query: 130 YVCIAHDFFYGDEPKFINAVLDKVSRKEEIK 160 + +A F D K++N VLDK++ K Sbjct: 107 AIEVAKVFGSDDSHKYVNGVLDKLAPALNRK 137 >gi|312963299|ref|ZP_07777782.1| N utilization substance protein B [Pseudomonas fluorescens WH6] gi|311282379|gb|EFQ60977.1| N utilization substance protein B [Pseudomonas fluorescens WH6] Length = 166 Score = 169 bits (428), Expect = 1e-40, Method: Composition-based stats. Identities = 48/155 (30%), Positives = 76/155 (49%), Gaps = 16/155 (10%) Query: 9 DLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEW 68 S +R AR A QALYQ + G S EI +++ V++ + D + Sbjct: 21 KPSKSEKRRAARQLATQALYQRHMAGTSLNEIEAQFR-----------VDNDFTFADQSY 69 Query: 69 FRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIIS 128 F I+HGV ID ++ CL + LD + ++LR EL++ VP V+I+ Sbjct: 70 FHDILHGVPANLTEIDAALTPCLD--LTLEELDPVELAVLRLSTWELLKRVDVPYRVVIN 127 Query: 129 EYVCIAHDFFYGDEPKFINAVLDKVS---RKEEIK 160 E + +A + D KF+N VLDK++ R+ E+K Sbjct: 128 EGIELAKVYGSTDGHKFVNGVLDKLAPRLREAEVK 162 >gi|254787582|ref|YP_003075011.1| transcription antitermination protein NusB [Teredinibacter turnerae T7901] gi|259514910|sp|C5BS84|NUSB_TERTT RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|237683677|gb|ACR10941.1| putative transcription antitermination factor NusB [Teredinibacter turnerae T7901] Length = 147 Score = 169 bits (428), Expect = 2e-40, Method: Composition-based stats. Identities = 46/146 (31%), Positives = 69/146 (47%), Gaps = 13/146 (8%) Query: 10 LK-LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEW 68 +K + R AR A+QA+YQ + G I +E+ T ++ VD E+ Sbjct: 1 MKVTAATRSRARHFAMQAIYQWQMNGNPLHVIEAEFHT-----------DNDMSKVDTEY 49 Query: 69 FRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIIS 128 F + HGV K +D L + +LD + ++LR EL VP +V+I+ Sbjct: 50 FHELFHGVAADKSALDACFLPHL-KSLPLEKLDPVTLALLRQATFELKNRVDVPYKVVIN 108 Query: 129 EYVCIAHDFFYGDEPKFINAVLDKVS 154 E V +A F D KF+N VLDKV+ Sbjct: 109 EAVNLAKKFGAEDSHKFVNGVLDKVA 134 >gi|262274775|ref|ZP_06052586.1| transcription termination protein NusB [Grimontia hollisae CIP 101886] gi|262221338|gb|EEY72652.1| transcription termination protein NusB [Grimontia hollisae CIP 101886] Length = 151 Score = 169 bits (428), Expect = 2e-40, Method: Composition-based stats. Identities = 43/154 (27%), Positives = 73/154 (47%), Gaps = 6/154 (3%) Query: 10 LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEY---ETYRFCADTELDVESVYLHVDL 66 +K + RR AR A+QA+Y + + +I +++ + Y + D+ Sbjct: 1 MKPAARRN-ARHFALQAIYSWQLTKDNVADIEAQFLAADNYEEEEHQAEEPRLRQPETDV 59 Query: 67 EWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVI 126 E+FR ++ GV+ Q +D + L+ LD + +ILR + EL + VP +V+ Sbjct: 60 EYFRDLLSGVVLNYQELDSKMRPYLSR--PLQDLDEMEHAILRLSMYELCKREDVPYKVV 117 Query: 127 ISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIK 160 I+E + +A F D KF+N VLDK K Sbjct: 118 INEAIELAKRFGAEDSHKFVNGVLDKAVPTLRKK 151 >gi|260434089|ref|ZP_05788060.1| transcription antitermination factor NusB [Silicibacter lacuscaerulensis ITI-1157] gi|260417917|gb|EEX11176.1| transcription antitermination factor NusB [Silicibacter lacuscaerulensis ITI-1157] Length = 160 Score = 169 bits (428), Expect = 2e-40, Method: Composition-based stats. Identities = 57/162 (35%), Positives = 89/162 (54%), Gaps = 6/162 (3%) Query: 1 MTIQDNKKDLKLSH-RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVES 59 MT D K + ARL AVQAL+Q++ G +T ++++E+ +RF A E D Sbjct: 1 MTQTDTPKPANRKRLMKSAARLYAVQALFQMEQSGQTTEQVVNEFLDHRFGAVYEGDE-- 58 Query: 60 VYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECH 119 L D FR ++ ++ + ID + L KW SR+D L ++ RA EL + Sbjct: 59 -MLEGDSALFRKLVDDAVNYQAPIDQMTDRALVAKWPISRIDPTLRALFRAAGAELSQS- 116 Query: 120 SVPVEVIISEYVCIAHDFF-YGDEPKFINAVLDKVSRKEEIK 160 P +V+I+E+V +A FF G EPKF+NAVLD ++R+ + + Sbjct: 117 DTPPKVVITEFVDVARAFFPEGKEPKFVNAVLDHMAREAKPE 158 >gi|157374416|ref|YP_001473016.1| transcription antitermination protein NusB [Shewanella sediminis HAW-EB3] gi|189035907|sp|A8FSR5|NUSB_SHESH RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|157316790|gb|ABV35888.1| NusB antitermination factor [Shewanella sediminis HAW-EB3] Length = 134 Score = 169 bits (428), Expect = 2e-40, Method: Composition-based stats. Identities = 41/148 (27%), Positives = 70/148 (47%), Gaps = 14/148 (9%) Query: 10 LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF 69 +K S RR AR AVQA+Y + G + ++ E+ T E +D+ +F Sbjct: 1 MKPSERR-KARRLAVQAIYSWQLSGNNIADVEHEFLT-----------EQKIDGIDVAYF 48 Query: 70 RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISE 129 R ++ G ++ ID I + ++ + I ++LR EL VP +V I+E Sbjct: 49 RELLSGTATKQAQIDEQIIPHIER--PYNEVSPIEKAVLRLATYELTFRKDVPYKVAINE 106 Query: 130 YVCIAHDFFYGDEPKFINAVLDKVSRKE 157 + +A F D KF+N +LDK+ ++ Sbjct: 107 AIELAKAFGAEDGHKFVNGILDKIVGRK 134 >gi|90579826|ref|ZP_01235634.1| transcription antitermination protein NusB [Vibrio angustum S14] gi|330445271|ref|ZP_08308923.1| transcription antitermination factor NusB [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] gi|90438711|gb|EAS63894.1| transcription antitermination protein NusB [Vibrio angustum S14] gi|328489462|dbj|GAA03420.1| transcription antitermination factor NusB [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] Length = 156 Score = 169 bits (428), Expect = 2e-40, Method: Composition-based stats. Identities = 42/155 (27%), Positives = 76/155 (49%), Gaps = 6/155 (3%) Query: 10 LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYL---HVDL 66 +K + RR AR AVQA+Y + + +I + + + E ++ L H D+ Sbjct: 5 VKPAARRN-ARQFAVQAIYSWQLTKGNVADIEQHFLSGDKFEEEEHQADAPVLAAPHTDV 63 Query: 67 EWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVI 126 +FR + GV+ Q +D + L+ LD + ++LR + E+++ VP +V+ Sbjct: 64 SYFRDLFTGVVLSHQELDSKMRPYLSR--PLQDLDQMELALLRLAMYEMVKREDVPFKVV 121 Query: 127 ISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKR 161 I+E + +A F D KF+N VLDK + ++ Sbjct: 122 INEAIELAKLFGAEDSHKFVNGVLDKAAPTLRKEK 156 >gi|16759395|ref|NP_455012.1| transcription antitermination protein NusB [Salmonella enterica subsp. enterica serovar Typhi str. CT18] gi|29142833|ref|NP_806175.1| transcription antitermination protein NusB [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|213027238|ref|ZP_03341685.1| transcription antitermination protein NusB [Salmonella enterica subsp. enterica serovar Typhi str. 404ty] gi|213163226|ref|ZP_03348936.1| transcription antitermination protein NusB [Salmonella enterica subsp. enterica serovar Typhi str. E00-7866] gi|213418053|ref|ZP_03351130.1| transcription antitermination protein NusB [Salmonella enterica subsp. enterica serovar Typhi str. E01-6750] gi|213579887|ref|ZP_03361713.1| transcription antitermination protein NusB [Salmonella enterica subsp. enterica serovar Typhi str. E98-0664] gi|213615893|ref|ZP_03371719.1| transcription antitermination protein NusB [Salmonella enterica subsp. enterica serovar Typhi str. E98-2068] gi|213650170|ref|ZP_03380223.1| transcription antitermination protein NusB [Salmonella enterica subsp. enterica serovar Typhi str. J185] gi|213855378|ref|ZP_03383618.1| transcription antitermination protein NusB [Salmonella enterica subsp. enterica serovar Typhi str. M223] gi|289804986|ref|ZP_06535615.1| transcription antitermination protein NusB [Salmonella enterica subsp. enterica serovar Typhi str. AG3] gi|289825061|ref|ZP_06544413.1| transcription antitermination protein NusB [Salmonella enterica subsp. enterica serovar Typhi str. E98-3139] gi|22095954|sp|Q8Z8X6|NUSB_SALTI RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|25299803|pir||AB0554 N utilization substance protein B [imported] - Salmonella enterica subsp. enterica serovar Typhi (strain CT18) gi|16501686|emb|CAD08874.1| N utilization substance protein B [Salmonella enterica subsp. enterica serovar Typhi] gi|29138465|gb|AAO70035.1| N utilization substance protein B [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] Length = 139 Score = 169 bits (428), Expect = 2e-40, Method: Composition-based stats. Identities = 40/145 (27%), Positives = 66/145 (45%), Gaps = 14/145 (9%) Query: 10 LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF 69 +K + R AR AVQALY + ++ ++ E VD+ +F Sbjct: 1 MKPAA-RHRARECAVQALYSWQLSQNDIADVEYQFLA-----------EQDVKDVDVLYF 48 Query: 70 RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISE 129 R ++ GV ++D L+ L+ L + ++LR + EL + VP +V I+E Sbjct: 49 RELLSGVATNSAYLDGLMKPYLSR--LLEELGQVEKAVLRIALFELSKRSDVPYKVAINE 106 Query: 130 YVCIAHDFFYGDEPKFINAVLDKVS 154 + +A F D KF+N VLDK + Sbjct: 107 AIELAKTFGAEDSHKFVNGVLDKAA 131 >gi|167855582|ref|ZP_02478342.1| transcription antitermination protein NusB [Haemophilus parasuis 29755] gi|167853273|gb|EDS24527.1| transcription antitermination protein NusB [Haemophilus parasuis 29755] Length = 137 Score = 168 bits (427), Expect = 2e-40, Method: Composition-based stats. Identities = 46/151 (30%), Positives = 71/151 (47%), Gaps = 14/151 (9%) Query: 10 LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF 69 +K+S RR AR AVQALY I S ++ + T + VD+ +F Sbjct: 1 MKVSPRRR-ARECAVQALYSWYISQNSIEQVELAFVT-----------DQDMQGVDMPYF 48 Query: 70 RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISE 129 R ++ G ++ ID ++ L + + LD I +ILR EL VP +V I+E Sbjct: 49 RKLLRGTVENVDVIDDILRPYLDR--ADNELDPIERTILRLASYELKFELDVPYKVAINE 106 Query: 130 YVCIAHDFFYGDEPKFINAVLDKVSRKEEIK 160 + +A F D K++N VLDK++ K Sbjct: 107 AIEVAKVFGSDDSHKYVNGVLDKLAPALNRK 137 >gi|325578284|ref|ZP_08148419.1| transcription termination/antitermination factor NusB [Haemophilus parainfluenzae ATCC 33392] gi|325160020|gb|EGC72149.1| transcription termination/antitermination factor NusB [Haemophilus parainfluenzae ATCC 33392] Length = 145 Score = 168 bits (427), Expect = 2e-40, Method: Composition-based stats. Identities = 44/152 (28%), Positives = 68/152 (44%), Gaps = 13/152 (8%) Query: 3 IQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYL 62 + D K+ +K R AR AVQALY + G + ++ + V+ Sbjct: 1 MTDKKEPVKKVSPRRRARECAVQALYSWALSGNAPEQVELTFV-----------VDQDLK 49 Query: 63 HVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVP 122 VD +F + + + +D +S L + LD I +ILR V EL VP Sbjct: 50 GVDKPYFSRLFRQTVANVEAVDFSMSHYLDR--ALDELDPIERAILRLAVYELQFEPDVP 107 Query: 123 VEVIISEYVCIAHDFFYGDEPKFINAVLDKVS 154 +V I+E + +A F + K+IN VLDKV+ Sbjct: 108 YKVAINEAIEVAKVFGADESHKYINGVLDKVA 139 >gi|119774157|ref|YP_926897.1| transcription antitermination protein NusB [Shewanella amazonensis SB2B] gi|166215714|sp|A1S4C1|NUSB_SHEAM RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|119766657|gb|ABL99227.1| NusB antitermination factor [Shewanella amazonensis SB2B] Length = 134 Score = 168 bits (427), Expect = 2e-40, Method: Composition-based stats. Identities = 42/148 (28%), Positives = 67/148 (45%), Gaps = 14/148 (9%) Query: 10 LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF 69 +K S RR AR AVQA+Y + G + ++ E+ T E VD+ +F Sbjct: 1 MKPSERR-KARRLAVQAIYSWQLSGNNVADVEHEFLT-----------EQELDGVDVAYF 48 Query: 70 RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISE 129 R + G + +D + L + + +ILR V EL VP +V+I+E Sbjct: 49 RELFAGAATKTAQLDEKLKPLLDR--PLEEVSPVEKAILRLAVYELTFRKDVPYKVVINE 106 Query: 130 YVCIAHDFFYGDEPKFINAVLDKVSRKE 157 + +A F D KF+N +LDK+ + Sbjct: 107 AIELAKSFGAEDGHKFVNGILDKLVARN 134 >gi|113969444|ref|YP_733237.1| transcription antitermination protein NusB [Shewanella sp. MR-4] gi|114046672|ref|YP_737222.1| transcription antitermination protein NusB [Shewanella sp. MR-7] gi|117919549|ref|YP_868741.1| transcription antitermination protein NusB [Shewanella sp. ANA-3] gi|119390820|sp|Q0HL87|NUSB_SHESM RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|119390821|sp|Q0HXJ0|NUSB_SHESR RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|166215719|sp|A0KU66|NUSB_SHESA RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|113884128|gb|ABI38180.1| NusB antitermination factor [Shewanella sp. MR-4] gi|113888114|gb|ABI42165.1| NusB antitermination factor [Shewanella sp. MR-7] gi|117611881|gb|ABK47335.1| NusB antitermination factor [Shewanella sp. ANA-3] Length = 134 Score = 168 bits (426), Expect = 2e-40, Method: Composition-based stats. Identities = 45/148 (30%), Positives = 69/148 (46%), Gaps = 15/148 (10%) Query: 10 LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF 69 +K S RR AR AVQA+Y + G + ++ E+ T E VD+ +F Sbjct: 1 MKPSERR-KARRLAVQAIYSWQLSGNNIADVEHEFLT-----------EQSLDGVDVAYF 48 Query: 70 RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISE 129 R + GV +K +D L L + + +I+R EL VP +V I+E Sbjct: 49 RELFAGVATKKTQLDELFIPHLDR--PIDEVSPVEKAIVRLAAYELTFRKDVPFKVAINE 106 Query: 130 YVCIAHDFFYGDEPKFINAVLDK-VSRK 156 + +A F + KF+N +LDK V+RK Sbjct: 107 AIELAKAFGADESHKFVNGLLDKLVARK 134 >gi|89073134|ref|ZP_01159673.1| transcription antitermination protein NusB [Photobacterium sp. SKA34] gi|89051087|gb|EAR56544.1| transcription antitermination protein NusB [Photobacterium sp. SKA34] Length = 156 Score = 168 bits (426), Expect = 2e-40, Method: Composition-based stats. Identities = 43/155 (27%), Positives = 76/155 (49%), Gaps = 6/155 (3%) Query: 10 LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYL---HVDL 66 +K + RR AR AVQA+Y + + +I + + + E ++ L H D+ Sbjct: 5 VKPAARRN-ARQFAVQAIYSWQLTKGNVADIEQHFLSGDKFEEEEHQADAPVLAAPHTDV 63 Query: 67 EWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVI 126 +FR + GV+ Q +D + L+ LD + ++LR + E+++ VP +V+ Sbjct: 64 SYFRDLFTGVVLSHQELDSKMRPYLSR--PLQDLDQMELALLRLAMYEMVKREDVPFKVV 121 Query: 127 ISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKR 161 I+E + +A F D KFIN VLDK + ++ Sbjct: 122 INEAIELAKLFGAEDSHKFINGVLDKAAPTLRKEK 156 >gi|59711311|ref|YP_204087.1| transcription antitermination protein NusB [Vibrio fischeri ES114] gi|197335476|ref|YP_002155467.1| transcription antitermination factor NusB [Vibrio fischeri MJ11] gi|31076819|sp|Q8G9G3|NUSB_VIBFI RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|75431770|sp|Q5E6Z7|NUSB_VIBF1 RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|238690266|sp|B5FBF9|NUSB_VIBFM RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|26522774|dbj|BAC44861.1| NusB protein [Vibrio fischeri] gi|59479412|gb|AAW85199.1| transcription antitermination factor NusB [Vibrio fischeri ES114] gi|197316966|gb|ACH66413.1| transcription antitermination factor NusB [Vibrio fischeri MJ11] Length = 155 Score = 167 bits (425), Expect = 3e-40, Method: Composition-based stats. Identities = 40/155 (25%), Positives = 71/155 (45%), Gaps = 6/155 (3%) Query: 9 DLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTEL---DVESVYLHVD 65 +K + RR AR A+QA+Y + + +I ++ T + E + + D Sbjct: 4 SVKPAARRN-ARQFALQAIYSWQLSKENVADIEEQFLTAEKYDEEEHHANEPKLQTPETD 62 Query: 66 LEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEV 125 + +FR + GV +D + L+ LD + ++LR + E++ VP +V Sbjct: 63 VAYFRDLFSGVALNHMKLDGKMRPYLSR--PLQDLDQMELALLRMSIYEMMNRDDVPYKV 120 Query: 126 IISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIK 160 +I+E + +A F D KF+N VLDK + K Sbjct: 121 VINEAIELAKVFAAEDSHKFVNGVLDKAAPTLRKK 155 >gi|301156187|emb|CBW15658.1| transcription antitermination protein [Haemophilus parainfluenzae T3T1] Length = 145 Score = 167 bits (425), Expect = 3e-40, Method: Composition-based stats. Identities = 43/152 (28%), Positives = 67/152 (44%), Gaps = 13/152 (8%) Query: 3 IQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYL 62 + + K+ +K R AR AVQALY + G + ++ + V+ Sbjct: 1 MTEKKEPVKKVSPRRRARECAVQALYSWALSGNAPEQVELTFV-----------VDQDLK 49 Query: 63 HVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVP 122 VD +F + + +D +S L + LD I +ILR V EL VP Sbjct: 50 GVDKPYFSRLFRQTVANVDSVDFSMSHYLDR--TLDELDPIEKAILRLAVYELQFEPDVP 107 Query: 123 VEVIISEYVCIAHDFFYGDEPKFINAVLDKVS 154 +V I+E + +A F + K+IN VLDKV+ Sbjct: 108 YKVAINEAIEVAKVFGADESHKYINGVLDKVA 139 >gi|213427852|ref|ZP_03360602.1| transcription antitermination protein NusB [Salmonella enterica subsp. enterica serovar Typhi str. E02-1180] Length = 139 Score = 167 bits (425), Expect = 4e-40, Method: Composition-based stats. Identities = 41/145 (28%), Positives = 67/145 (46%), Gaps = 14/145 (9%) Query: 10 LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF 69 +KL+ R AR AVQALY + ++ ++ E VD+ +F Sbjct: 1 MKLAA-RHRARECAVQALYSWQLSQNDIADVEYQFLA-----------EQDVKDVDVLYF 48 Query: 70 RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISE 129 R ++ GV ++D L+ L+ L + ++LR + EL + VP +V I+E Sbjct: 49 RELLSGVATNSAYLDGLMKPYLSR--LLEELGQVEKAVLRIALFELSKRSDVPYKVAINE 106 Query: 130 YVCIAHDFFYGDEPKFINAVLDKVS 154 + +A F D KF+N VLDK + Sbjct: 107 AIELAKTFGAEDSHKFVNGVLDKAA 131 >gi|304407046|ref|ZP_07388700.1| NusB antitermination factor [Paenibacillus curdlanolyticus YK9] gi|304344033|gb|EFM09873.1| NusB antitermination factor [Paenibacillus curdlanolyticus YK9] Length = 156 Score = 167 bits (424), Expect = 4e-40, Method: Composition-based stats. Identities = 40/139 (28%), Positives = 66/139 (47%), Gaps = 1/139 (0%) Query: 15 RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74 +R +AR AVQ+LYQ+++ + E + D E+ + R ++ Sbjct: 2 KRRLAREIAVQSLYQMEMNEVTAEEAVDMLMEEARQQDNEIGAHPAEAAKVNAFTRGLVF 61 Query: 75 GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134 GV++RK ID ++ LT W RL + ILR E++ VP + I+E + +A Sbjct: 62 GVIERKTAIDQMLQQYLT-GWQVDRLSRVDRQILRLAAYEILFRDDVPPKAAINEAIELA 120 Query: 135 HDFFYGDEPKFINAVLDKV 153 F + KF+N VL K+ Sbjct: 121 KHFGTDESGKFVNGVLGKL 139 >gi|154253354|ref|YP_001414178.1| NusB antitermination factor [Parvibaculum lavamentivorans DS-1] gi|154157304|gb|ABS64521.1| NusB antitermination factor [Parvibaculum lavamentivorans DS-1] Length = 171 Score = 167 bits (424), Expect = 4e-40, Method: Composition-based stats. Identities = 58/150 (38%), Positives = 87/150 (58%), Gaps = 4/150 (2%) Query: 21 LAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRK 80 L AVQALYQ+DI E++ E+ +R E + ++ D F ++ GV+ + Sbjct: 24 LFAVQALYQMDIAATPLDEVVEEFVEHRL---EEPEGDNEIFAADKVHFEDVVRGVVREQ 80 Query: 81 QHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYG 140 + +D+ ++S L + WS +RLD L +ILR G EL C VP++V+I+EYV IAH FF G Sbjct: 81 RELDVQVNSALAKGWSLARLDATLRAILRCGTYELRRCKDVPLKVVINEYVEIAHAFFEG 140 Query: 141 DEPKFINAVLDKVSRKEEIKRSGCVSAITQ 170 DEP +NAVLD++ R SG ++ Sbjct: 141 DEPGVVNAVLDRLGRDIRAG-SGIGHGSSE 169 >gi|217976846|ref|YP_002360993.1| NusB antitermination factor [Methylocella silvestris BL2] gi|217502222|gb|ACK49631.1| NusB antitermination factor [Methylocella silvestris BL2] Length = 154 Score = 167 bits (424), Expect = 4e-40, Method: Composition-based stats. Identities = 59/156 (37%), Positives = 86/156 (55%), Gaps = 6/156 (3%) Query: 10 LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF 69 + + R ARLAAVQALYQ+D+ E +E+E++ + E +Y +L +F Sbjct: 1 MSNADGRSAARLAAVQALYQMDVTDKGLKETCAEFESFWLGGEVEG---QLYKPAELAFF 57 Query: 70 RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISE 129 + I+ GV+ + ID I L E W R+D +L +ILRAG EL + VP V I E Sbjct: 58 KDILSGVLADQGPIDRAIDQTLVEGWPLVRIDSVLRAILRAGAYELKKRTDVPARVAIKE 117 Query: 130 YVCIAHDFFYGDEPKFINAVLDKVSRK---EEIKRS 162 YV +A FF +E +NAVLD ++R+ EE +R Sbjct: 118 YVDVAGAFFEREESGMVNAVLDHLARRFRAEEFERP 153 >gi|26522749|dbj|BAC44853.1| NusB protein [Photobacterium phosphoreum] Length = 157 Score = 167 bits (424), Expect = 4e-40, Method: Composition-based stats. Identities = 41/154 (26%), Positives = 73/154 (47%), Gaps = 6/154 (3%) Query: 10 LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHV---DL 66 +K + RR AR AVQA+Y + + +I + + + E ++ D+ Sbjct: 5 VKPAARRN-ARQFAVQAIYSWQLTKGNVADIEQYFLSGDKFEEEEHQADAPVCKAPDTDV 63 Query: 67 EWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVI 126 +FR + GV+ Q +D + L+ LD + ++LR + E+++ VP +V+ Sbjct: 64 SYFRDLFAGVVLSHQELDSKMRPYLSR--PLQDLDQMELALLRLAMYEMVKREDVPFKVV 121 Query: 127 ISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIK 160 I+E + +A F D KF+N VLDK + K Sbjct: 122 INEAIELAKLFGAEDSHKFVNGVLDKAAPSLRKK 155 >gi|296284343|ref|ZP_06862341.1| transcription termination factor [Citromicrobium bathyomarinum JL354] Length = 153 Score = 167 bits (424), Expect = 5e-40, Method: Composition-based stats. Identities = 58/144 (40%), Positives = 80/144 (55%), Gaps = 3/144 (2%) Query: 12 LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71 S R ARLAAVQALYQ D+ G +++ E+ +R + E D Y ++ +F Sbjct: 7 RSTARSAARLAAVQALYQQDMEGTKLPKLLDEFHQHRLGREIEGD---TYADAEVPFFDD 63 Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131 I+ GV R++ IDL +S L + WS RLD + +LR G ELI +P +ISEYV Sbjct: 64 IVRGVDARREEIDLQLSEKLAQGWSLKRLDKTMLQVLRCGTYELIARADIPTGAVISEYV 123 Query: 132 CIAHDFFYGDEPKFINAVLDKVSR 155 +A FF E KF N VLD V++ Sbjct: 124 DVAKAFFDDREAKFANGVLDAVAK 147 >gi|90406964|ref|ZP_01215155.1| N utilization substance protein B [Psychromonas sp. CNPT3] gi|90312006|gb|EAS40100.1| N utilization substance protein B [Psychromonas sp. CNPT3] Length = 139 Score = 167 bits (423), Expect = 5e-40, Method: Composition-based stats. Identities = 47/151 (31%), Positives = 79/151 (52%), Gaps = 14/151 (9%) Query: 10 LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF 69 +K + RR AR AVQA+YQ I +II ++ V+ + D+ +F Sbjct: 1 MKPAERRR-ARQFAVQAVYQWQITKGPVGQIIEQF-----------SVDQDFSKTDVPYF 48 Query: 70 RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISE 129 + ++ GV+ R + ID +S L+ K +DM+ +ILR + EL VP +V+++E Sbjct: 49 KELLAGVVSRIETIDEKLSPYLSRK--IGDVDMVDIAILRLAMFELSYRTDVPHKVVLNE 106 Query: 130 YVCIAHDFFYGDEPKFINAVLDKVSRKEEIK 160 + +A DF + KF+N VLDK R +++ Sbjct: 107 AIELAKDFATDESYKFVNGVLDKALRSLKLR 137 >gi|56461241|ref|YP_156522.1| transcription termination factor NusB [Idiomarina loihiensis L2TR] gi|81599971|sp|Q5QVE5|NUSB_IDILO RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|56180251|gb|AAV82973.1| Transcription termination factor NusB [Idiomarina loihiensis L2TR] Length = 139 Score = 167 bits (423), Expect = 6e-40, Method: Composition-based stats. Identities = 42/143 (29%), Positives = 69/143 (48%), Gaps = 14/143 (9%) Query: 10 LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF 69 +K + RR AR AVQA+Y + S ++I +++ T E+ VD+++F Sbjct: 1 MKPAARR-KARKLAVQAIYSWQLSQNSFSDIEAQFLT-----------ENDTSKVDVDYF 48 Query: 70 RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISE 129 ++ GV + +D + L LD I ++LR EL E VP +V I+E Sbjct: 49 LELVRGVGGHYRTLDEALEPFLDR--PIKELDPIELAVLRLAAYELRERVDVPYKVAINE 106 Query: 130 YVCIAHDFFYGDEPKFINAVLDK 152 + +A F + +F+N VLDK Sbjct: 107 AIELAKSFGADESHRFVNGVLDK 129 >gi|254417847|ref|ZP_05031571.1| transcription antitermination factor NusB [Brevundimonas sp. BAL3] gi|196184024|gb|EDX79000.1| transcription antitermination factor NusB [Brevundimonas sp. BAL3] Length = 174 Score = 166 bits (422), Expect = 7e-40, Method: Composition-based stats. Identities = 57/146 (39%), Positives = 83/146 (56%), Gaps = 3/146 (2%) Query: 11 KLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFR 70 K R ++RLAAVQALYQ+++ G +I+E+ +RF D E + D +F Sbjct: 29 KQRRARTVSRLAAVQALYQMELAGEGVETVITEFANFRFDTDIEGEA---LAEADEAYFA 85 Query: 71 VIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEY 130 I+ GV++ ++ ID I + L W R+D L ++LR+G ELI+ P EV+I EY Sbjct: 86 DIVRGVIESQRDIDTAIKARLASNWKLERIDATLRALLRSGAWELIKHPETPREVVIDEY 145 Query: 131 VCIAHDFFYGDEPKFINAVLDKVSRK 156 V +A FF E +F+NA LD VSR Sbjct: 146 VELAKAFFDDSEARFVNAALDGVSRD 171 >gi|304320998|ref|YP_003854641.1| transcription antitermination protein NusB [Parvularcula bermudensis HTCC2503] gi|303299900|gb|ADM09499.1| transcription antitermination protein NusB [Parvularcula bermudensis HTCC2503] Length = 166 Score = 166 bits (422), Expect = 7e-40, Method: Composition-based stats. Identities = 56/169 (33%), Positives = 86/169 (50%), Gaps = 5/169 (2%) Query: 1 MTIQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESV 60 MT + + + +ARL AVQALYQ++ G +I E+ +R + + S Sbjct: 1 MTQIRQMQRPRSVEAKTMARLGAVQALYQMEHAGTGVEAVIREFVDHRLGGEMDG---SA 57 Query: 61 YLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHS 120 D E+F I+ GV++ ++ ID I L E W+ RLD +ILRAG+ EL+ Sbjct: 58 LHEADDEFFAAIVRGVVEGQRRIDPFIQRHLAEGWTLKRLDATARAILRAGLFELVSRPD 117 Query: 121 VPVEVIISEYVCIAHDFF--YGDEPKFINAVLDKVSRKEEIKRSGCVSA 167 +P ++ EYV +A+ FF EP+FINAVLD +++ G Sbjct: 118 IPWRTVVDEYVELANSFFEKGEAEPRFINAVLDATAKEVRADDFGQDGG 166 >gi|52425030|ref|YP_088167.1| transcription antitermination protein NusB [Mannheimia succiniciproducens MBEL55E] gi|81609560|sp|Q65TX8|NUSB_MANSM RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|52307082|gb|AAU37582.1| NusB protein [Mannheimia succiniciproducens MBEL55E] Length = 143 Score = 166 bits (422), Expect = 8e-40, Method: Composition-based stats. Identities = 46/154 (29%), Positives = 68/154 (44%), Gaps = 17/154 (11%) Query: 1 MTIQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESV 60 MT Q K+ R AR AVQALY I + + T + Sbjct: 1 MTEQVKKRP----SPRRRARECAVQALYSFQISQNPVETVELSFVT-----------DQD 45 Query: 61 YLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHS 120 VD+ +FR + ++ +D ++ L S + LD I +ILR V EL Sbjct: 46 MKGVDMPYFRKLFRQTVENIPSVDSTMAPYLDR--SANELDPIEKAILRLAVYELKYELD 103 Query: 121 VPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVS 154 VP +V+I+E + +A F D K+IN VLDK++ Sbjct: 104 VPYKVVINEAIEVAKTFGAEDSHKYINGVLDKIA 137 >gi|240949529|ref|ZP_04753869.1| transcription antitermination protein NusB [Actinobacillus minor NM305] gi|257464994|ref|ZP_05629365.1| transcription antitermination protein NusB [Actinobacillus minor 202] gi|240296102|gb|EER46763.1| transcription antitermination protein NusB [Actinobacillus minor NM305] gi|257450654|gb|EEV24697.1| transcription antitermination protein NusB [Actinobacillus minor 202] Length = 144 Score = 166 bits (422), Expect = 8e-40, Method: Composition-based stats. Identities = 51/145 (35%), Positives = 68/145 (46%), Gaps = 7/145 (4%) Query: 10 LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF 69 +KL+ RR AR AVQALY I S EI + T F A+ + D E +D F Sbjct: 1 MKLTPRRR-ARECAVQALYSWAISQNSVEEIELVFHTDTFAAE-DPDTEG---KIDKALF 55 Query: 70 RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISE 129 I G + ID + L +D+I SILR EL P +VII+E Sbjct: 56 TRIFRGTVASIDEIDRSLQPFLDRN--PENVDLIERSILRMAAFELHFEQDTPYKVIINE 113 Query: 130 YVCIAHDFFYGDEPKFINAVLDKVS 154 + +A F D K+IN VLDK++ Sbjct: 114 AIEVAKAFGSDDSHKYINGVLDKLA 138 >gi|77464330|ref|YP_353834.1| NusB antitermination factor [Rhodobacter sphaeroides 2.4.1] gi|77388748|gb|ABA79933.1| NusB antitermination factor [Rhodobacter sphaeroides 2.4.1] Length = 155 Score = 166 bits (421), Expect = 9e-40, Method: Composition-based stats. Identities = 56/159 (35%), Positives = 92/159 (57%), Gaps = 10/159 (6%) Query: 3 IQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYL 62 ++ +++ +K +RL AVQAL+Q++ G + ++ E+ET+RF A E D Sbjct: 1 MKPDRRQMK-----SASRLYAVQALFQMETTGQTVEQVAREFETHRFGAVYEGDE---MA 52 Query: 63 HVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVP 122 D + FR I+ G ++R+ ID + L KW R+D ++ ++ RA EL+E P Sbjct: 53 EGDAKSFRAIVSGAVNRQAGIDQMTDRALVAKWPIDRIDPVIRALFRAAGSELLES-ETP 111 Query: 123 VEVIISEYVCIAHDFF-YGDEPKFINAVLDKVSRKEEIK 160 +V+I+E+V IA FF G EPKF+NAVLD ++R+ + Sbjct: 112 PKVVINEFVDIAKAFFPEGREPKFVNAVLDHMAREARPE 150 >gi|229847453|ref|ZP_04467550.1| transcription antitermination protein NusB [Haemophilus influenzae 7P49H1] gi|229809594|gb|EEP45321.1| transcription antitermination protein NusB [Haemophilus influenzae 7P49H1] Length = 144 Score = 166 bits (421), Expect = 1e-39, Method: Composition-based stats. Identities = 48/154 (31%), Positives = 73/154 (47%), Gaps = 16/154 (10%) Query: 1 MTIQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESV 60 MT Q K +K R AR VQALY + G + ++ F D ++D Sbjct: 1 MTEQ---KQVKKPSARRRARECTVQALYSWAVSGNTAEQV-----ELAFVLDQDMDG--- 49 Query: 61 YLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHS 120 VD +FR + ++ + +D IS + +F LD I +ILR V EL Sbjct: 50 ---VDKPYFRKLFRQTIENIETVDFSISPYIDR--TFDELDPIETAILRLAVYELRFELD 104 Query: 121 VPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVS 154 VP +V+I+E + +A F + K+IN VLDK++ Sbjct: 105 VPYKVVINEAIEVAKVFGADESHKYINGVLDKIA 138 >gi|77361286|ref|YP_340861.1| transcription termination factor [Pseudoalteromonas haloplanktis TAC125] gi|119390799|sp|Q3II29|NUSB_PSEHT RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|76876197|emb|CAI87419.1| transcription termination factor [Pseudoalteromonas haloplanktis TAC125] Length = 136 Score = 166 bits (421), Expect = 1e-39, Method: Composition-based stats. Identities = 45/146 (30%), Positives = 74/146 (50%), Gaps = 14/146 (9%) Query: 10 LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF 69 +K + RR AR+ A+QA+Y + G + +I + ++ +E+ +D+E+F Sbjct: 1 MKPAARR-KARILALQAIYSWQLSGNAIADI-----------EQQMLIENDVTKIDVEYF 48 Query: 70 RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISE 129 + + GV + +D +S LT F LDM+ +ILR EL VP +V I+E Sbjct: 49 KDLASGVAVNYKQLDEAVSPHLTR--PFDELDMVERAILRLSSYELKFREDVPYKVAINE 106 Query: 130 YVCIAHDFFYGDEPKFINAVLDKVSR 155 + +A F D KF+N VLDK + Sbjct: 107 SIELAKMFGAEDSHKFVNGVLDKAVK 132 >gi|15602595|ref|NP_245667.1| transcription antitermination protein NusB [Pasteurella multocida subsp. multocida str. Pm70] gi|13431742|sp|P57868|NUSB_PASMU RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|12721025|gb|AAK02814.1| NusB [Pasteurella multocida subsp. multocida str. Pm70] Length = 144 Score = 166 bits (421), Expect = 1e-39, Method: Composition-based stats. Identities = 51/154 (33%), Positives = 72/154 (46%), Gaps = 16/154 (10%) Query: 1 MTIQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESV 60 MT Q ++K K+S RR AR AVQALY + S EI + E Sbjct: 1 MTEQKHEK--KISPRRR-ARECAVQALYSWYVSQNSPAEIELNFMA-----------EQD 46 Query: 61 YLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHS 120 VD +FR + + +D ++ L + S LD I +ILR V EL Sbjct: 47 LKGVDTAYFRRLFRQTAENVDAVDNIMIPYLDRE--VSELDPIEKAILRLAVYELKFELD 104 Query: 121 VPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVS 154 VP +V+I+E + +A F D K++N VLDKV+ Sbjct: 105 VPYKVVINEAIEVAKVFGAEDSHKYVNGVLDKVA 138 >gi|298291642|ref|YP_003693581.1| NusB antitermination factor [Starkeya novella DSM 506] gi|296928153|gb|ADH88962.1| NusB antitermination factor [Starkeya novella DSM 506] Length = 160 Score = 166 bits (420), Expect = 1e-39, Method: Composition-based stats. Identities = 53/158 (33%), Positives = 87/158 (55%), Gaps = 4/158 (2%) Query: 1 MTIQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESV 60 MT + K R+ ARL AVQALYQ+D+ +I++++E++ + E D Sbjct: 1 MTTGSKPANHKP-LRKSAARLNAVQALYQMDVAATPLADILAQFESHWIGHEIEGDE--- 56 Query: 61 YLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHS 120 D+ FR I+ GV+ + ID ++ + L + W R++ +L ++LRAG EL E Sbjct: 57 IASADVNLFRDIVGGVVREQLSIDPVLDAALVKGWPLKRIEAVLRAVLRAGAYELSERPD 116 Query: 121 VPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEE 158 VP V+++EYV +A F +E +NAVLD ++R + Sbjct: 117 VPARVVVAEYVNVAAAFLDREETGMVNAVLDGLARDKR 154 >gi|209694495|ref|YP_002262423.1| transcription antitermination protein NusB [Aliivibrio salmonicida LFI1238] gi|238055348|sp|B6EIA0|NUSB_ALISL RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|208008446|emb|CAQ78611.1| N utilization substance protein B (protein NusB) [Aliivibrio salmonicida LFI1238] Length = 155 Score = 166 bits (420), Expect = 1e-39, Method: Composition-based stats. Identities = 42/155 (27%), Positives = 70/155 (45%), Gaps = 6/155 (3%) Query: 9 DLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHV---D 65 +K + RR AR A+QA+Y I + I ++ T + E + L D Sbjct: 4 SVKPAARRN-ARQFALQAIYSWQISKENVAAIEEQFLTADKYDEEEHHAKEPKLQAPETD 62 Query: 66 LEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEV 125 + +FR + GV +D + L+ LD + ++LR + E++ VP +V Sbjct: 63 VAYFRDLFSGVALNHIKLDGKMRPYLSR--PLQDLDQMELALLRMSIYEMMNRDDVPYKV 120 Query: 126 IISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIK 160 +I+E + +A F D KF+N VLDK + K Sbjct: 121 VINEAIELAKVFAAEDSHKFVNGVLDKAAPTLRKK 155 >gi|68249964|ref|YP_249076.1| transcription antitermination protein NusB [Haemophilus influenzae 86-028NP] gi|81335612|sp|Q4QKN1|NUSB_HAEI8 RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|68058163|gb|AAX88416.1| N utilization substance protein B [Haemophilus influenzae 86-028NP] Length = 144 Score = 166 bits (420), Expect = 1e-39, Method: Composition-based stats. Identities = 48/154 (31%), Positives = 73/154 (47%), Gaps = 16/154 (10%) Query: 1 MTIQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESV 60 MT Q K +K R AR VQALY + G + ++ F D ++D Sbjct: 1 MTEQ---KQVKKPSARRRARECTVQALYSWAVSGNTAEQV-----ELAFVLDQDMDG--- 49 Query: 61 YLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHS 120 VD +FR + ++ + +D IS + +F LD I +ILR V EL Sbjct: 50 ---VDKPYFRKLFRQTVENIETVDFSISPYIDR--AFDELDPIETAILRLAVYELCFELD 104 Query: 121 VPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVS 154 VP +V+I+E + +A F + K+IN VLDK++ Sbjct: 105 VPYKVVINEAIEVAKVFGADESHKYINGVLDKIA 138 >gi|315499922|ref|YP_004088725.1| nusb antitermination factor [Asticcacaulis excentricus CB 48] gi|315417934|gb|ADU14574.1| NusB antitermination factor [Asticcacaulis excentricus CB 48] Length = 177 Score = 166 bits (420), Expect = 1e-39, Method: Composition-based stats. Identities = 55/157 (35%), Positives = 82/157 (52%), Gaps = 2/157 (1%) Query: 4 QDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELD--VESVY 61 + + LK R +ARL VQALYQ++I G +I E+ +RF + E + E Sbjct: 21 ESGRLSLKEKRARTVARLVLVQALYQMEIAGTGVESVIREFADFRFDGNIEGECGEEQRL 80 Query: 62 LHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSV 121 D +F + ++ + ID+LI+ L W R+D L +ILRAG EL V Sbjct: 81 GTADEAFFADGLRTIVKAQAEIDVLIAERLASNWRLDRIDTTLRAILRAGAWELKFRPDV 140 Query: 122 PVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEE 158 VEV+I+EYV IA FF +E +F+N LD +++ Sbjct: 141 AVEVVINEYVEIAKAFFGNEEARFVNGALDGIAKDAR 177 >gi|145636230|ref|ZP_01791900.1| transcription antitermination protein NusB [Haemophilus influenzae PittHH] gi|145641684|ref|ZP_01797261.1| transcription antitermination protein NusB [Haemophilus influenzae R3021] gi|145270752|gb|EDK10685.1| transcription antitermination protein NusB [Haemophilus influenzae PittHH] gi|145273731|gb|EDK13600.1| transcription antitermination protein NusB [Haemophilus influenzae 22.4-21] Length = 144 Score = 166 bits (420), Expect = 1e-39, Method: Composition-based stats. Identities = 48/154 (31%), Positives = 73/154 (47%), Gaps = 16/154 (10%) Query: 1 MTIQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESV 60 MT Q K +K R AR VQALY + G + ++ F D ++D Sbjct: 1 MTEQ---KQVKKPSARRRARECTVQALYSWAVSGNTAEQV-----ELAFVLDQDMDG--- 49 Query: 61 YLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHS 120 VD +FR + ++ + +D IS + +F LD I +ILR V EL Sbjct: 50 ---VDKPYFRKLFRQTIENIETVDFSISPYIDR--TFDELDPIETAILRLAVYELHFELD 104 Query: 121 VPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVS 154 VP +V+I+E + +A F + K+IN VLDK++ Sbjct: 105 VPYKVVINEAIEVAKVFGADESHKYINGVLDKIA 138 >gi|315125804|ref|YP_004067807.1| transcription termination factor [Pseudoalteromonas sp. SM9913] gi|315014318|gb|ADT67656.1| transcription termination factor [Pseudoalteromonas sp. SM9913] Length = 137 Score = 166 bits (420), Expect = 1e-39, Method: Composition-based stats. Identities = 44/147 (29%), Positives = 74/147 (50%), Gaps = 14/147 (9%) Query: 10 LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF 69 +K + RR AR+ A+QA+Y + G + +I + ++ +E+ +D+E+F Sbjct: 1 MKPAARR-KARILALQAVYSWQLSGNAIADI-----------EQQMLIENDVTKIDVEYF 48 Query: 70 RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISE 129 + + GV + +D +S LT F LD + +ILR EL VP +V I+E Sbjct: 49 KDLARGVAVNHKQLDEAVSPHLTR--PFDELDEVERAILRLSSYELKFREDVPYKVAINE 106 Query: 130 YVCIAHDFFYGDEPKFINAVLDKVSRK 156 + +A F D KF+N VLDK ++ Sbjct: 107 SIELAKMFGAEDSHKFVNGVLDKAVKQ 133 >gi|188582598|ref|YP_001926043.1| NusB antitermination factor [Methylobacterium populi BJ001] gi|179346096|gb|ACB81508.1| NusB antitermination factor [Methylobacterium populi BJ001] Length = 172 Score = 165 bits (419), Expect = 2e-39, Method: Composition-based stats. Identities = 53/159 (33%), Positives = 89/159 (55%), Gaps = 3/159 (1%) Query: 12 LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71 + R ARLA VQALY+++I + ++E+E + + + V+ + +FR Sbjct: 16 KPNTRTGARLAVVQALYEMEISDKGVIDALAEFEAFWIGQEIDG---VVHPPAETAFFRD 72 Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131 ++ G ++ ++ ID + + L + W RL+++L +ILRAG EL+ VP IS+YV Sbjct: 73 VLRGAVEEQRAIDPKLDAALAKGWPLRRLEVVLRAILRAGAYELMFRRDVPARAAISQYV 132 Query: 132 CIAHDFFYGDEPKFINAVLDKVSRKEEIKRSGCVSAITQ 170 +AH F+ GDEP +NAVLD+V R+ G +A + Sbjct: 133 DVAHSFYGGDEPGMVNAVLDRVGREVRSTEFGIPAAPKK 171 >gi|148826048|ref|YP_001290801.1| transcription antitermination protein NusB [Haemophilus influenzae PittEE] gi|166215690|sp|A5UCB7|NUSB_HAEIE RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|148716208|gb|ABQ98418.1| transcription antitermination protein NusB [Haemophilus influenzae PittEE] gi|309973183|gb|ADO96384.1| Transcription antitermination protein NusB [Haemophilus influenzae R2846] Length = 144 Score = 165 bits (419), Expect = 2e-39, Method: Composition-based stats. Identities = 48/154 (31%), Positives = 73/154 (47%), Gaps = 16/154 (10%) Query: 1 MTIQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESV 60 MT Q K +K R AR VQALY + G + ++ F D ++D Sbjct: 1 MTEQ---KQVKKPSARRRARECTVQALYSWAVSGNTAEQV-----ELAFVLDQDMDG--- 49 Query: 61 YLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHS 120 VD +FR + ++ + +D IS + +F LD I +ILR V EL Sbjct: 50 ---VDKPYFRKLFRQTIENIETVDFSISPYIDR--TFDELDPIETAILRLAVYELRFELD 104 Query: 121 VPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVS 154 VP +V+I+E + +A F + K+IN VLDK++ Sbjct: 105 VPYKVVINEAIEVAKVFGADESHKYINGVLDKIA 138 >gi|322515009|ref|ZP_08068019.1| transcription antitermination factor NusB [Actinobacillus ureae ATCC 25976] gi|322118998|gb|EFX91170.1| transcription antitermination factor NusB [Actinobacillus ureae ATCC 25976] Length = 163 Score = 165 bits (419), Expect = 2e-39, Method: Composition-based stats. Identities = 47/151 (31%), Positives = 71/151 (47%), Gaps = 15/151 (9%) Query: 5 DNKKD-LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLH 63 D ++ +K+S RR AR AVQALY + S E+ + T + Sbjct: 21 DKRRGFMKVSPRRR-ARECAVQALYSWYVSQNSVEEVELSFVT-----------DQDMNG 68 Query: 64 VDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPV 123 VDL +FR ++ + + ID + L +D I +ILR EL VP Sbjct: 69 VDLPYFRKLLRSTVLYIEAIDGALRPFLDRAE--DEVDPIERTILRLSAYELKYELDVPY 126 Query: 124 EVIISEYVCIAHDFFYGDEPKFINAVLDKVS 154 +V+I+E + +A F GD K+IN VLDK++ Sbjct: 127 KVVINEGIEVAKVFGSGDSHKYINGVLDKLA 157 >gi|156973480|ref|YP_001444387.1| transcription antitermination protein NusB [Vibrio harveyi ATCC BAA-1116] gi|269962347|ref|ZP_06176697.1| N utilization substance protein B [Vibrio harveyi 1DA3] gi|166215728|sp|A7MWU1|NUSB_VIBHB RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|156525074|gb|ABU70160.1| hypothetical protein VIBHAR_01170 [Vibrio harveyi ATCC BAA-1116] gi|269832843|gb|EEZ86952.1| N utilization substance protein B [Vibrio harveyi 1DA3] Length = 155 Score = 165 bits (419), Expect = 2e-39, Method: Composition-based stats. Identities = 42/155 (27%), Positives = 72/155 (46%), Gaps = 6/155 (3%) Query: 9 DLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTEL---DVESVYLHVD 65 +K + RR AR A+QA+Y I + I ++ + + EL + D Sbjct: 4 SVKPAARRN-ARQFALQAIYSWQITKDNVATIEEQFLSGDKYDEEELHASEPALAAPETD 62 Query: 66 LEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEV 125 + +FR ++ GV+ +D I ++ LDM+ ++LR + E+ VP +V Sbjct: 63 VAYFRELLSGVVLSHSELDSKIRPYVSR--PMQDLDMMELALLRLAMYEMTRREDVPYKV 120 Query: 126 IISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIK 160 +I+E + +A F D KF+N VLDK + K Sbjct: 121 VINEAIELAKVFAAEDSHKFVNGVLDKAAPHVRKK 155 >gi|152979151|ref|YP_001344780.1| transcription antitermination protein NusB [Actinobacillus succinogenes 130Z] gi|171704320|sp|A6VPE8|NUSB_ACTSZ RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|150840874|gb|ABR74845.1| NusB antitermination factor [Actinobacillus succinogenes 130Z] Length = 142 Score = 165 bits (419), Expect = 2e-39, Method: Composition-based stats. Identities = 45/148 (30%), Positives = 67/148 (45%), Gaps = 14/148 (9%) Query: 7 KKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDL 66 ++ K+S RR AR AVQALY + TEI + T E VD Sbjct: 3 EQKKKVSPRRR-ARECAVQALYSWAVSNNDATEIELSFIT-----------EQDMKGVDT 50 Query: 67 EWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVI 126 +FR + + + +D+ I+ L + L I ++LR EL VP +V Sbjct: 51 PYFRKLFRNTVTYLESVDVTIAPFLDR--TSEELTPIEKAVLRLATYELKYEPDVPYKVA 108 Query: 127 ISEYVCIAHDFFYGDEPKFINAVLDKVS 154 I+E + +A F D K+IN VLDK++ Sbjct: 109 INEAIELAKTFGAEDSHKYINGVLDKIA 136 >gi|126738747|ref|ZP_01754443.1| transcription antitermination factor NusB [Roseobacter sp. SK209-2-6] gi|126719928|gb|EBA16635.1| transcription antitermination factor NusB [Roseobacter sp. SK209-2-6] Length = 160 Score = 165 bits (418), Expect = 2e-39, Method: Composition-based stats. Identities = 54/164 (32%), Positives = 88/164 (53%), Gaps = 10/164 (6%) Query: 1 MTIQDNKKDLKLSHRR---GIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDV 57 MT + K S +R +RL AVQAL+Q++ G + +II E+E +RF A + D Sbjct: 1 MTQSGSAP--KGSGKRQMKSASRLYAVQALFQMEQSGQTFDQIIVEFEDHRFGAVYDGDE 58 Query: 58 ESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIE 117 D + FR ++ ++ + +D + L KW +R+D L ++ RA EL + Sbjct: 59 ---MAEGDTKLFRKLVEDAVNYQAPVDQMTDRALVAKWPIARIDPTLRALFRAAGAELTQ 115 Query: 118 CHSVPVEVIISEYVCIAHDFF-YGDEPKFINAVLDKVSRKEEIK 160 P +V+I+E+V IA FF G E KF+N VLD ++R+ + + Sbjct: 116 S-ETPPKVVINEFVDIARAFFPEGKESKFVNGVLDHMAREAKPE 158 >gi|167470223|ref|ZP_02334927.1| transcription antitermination factor NusB [Yersinia pestis FV-1] Length = 137 Score = 165 bits (418), Expect = 2e-39, Method: Composition-based stats. Identities = 39/136 (28%), Positives = 66/136 (48%), Gaps = 13/136 (9%) Query: 19 ARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMD 78 AR AVQALY + ++ ++ + + D VD+ +FR ++ GV Sbjct: 8 ARECAVQALYSWQLSKNDIADVELQFLSEQDVKD-----------VDIAYFRELLSGVAV 56 Query: 79 RKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFF 138 +D L++ L+ + L + ++LR + EL + VP +V I+E + +A F Sbjct: 57 NAASLDALMAPFLSRQ--LEELGQVERAVLRIALFELSKRDDVPYKVAINEAIELAKTFG 114 Query: 139 YGDEPKFINAVLDKVS 154 D KF+N VLDKV+ Sbjct: 115 AEDSHKFVNGVLDKVA 130 >gi|170717533|ref|YP_001784622.1| transcription antitermination protein NusB [Haemophilus somnus 2336] gi|189035891|sp|B0UU23|NUSB_HAES2 RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|168825662|gb|ACA31033.1| NusB antitermination factor [Haemophilus somnus 2336] Length = 144 Score = 165 bits (418), Expect = 2e-39, Method: Composition-based stats. Identities = 50/155 (32%), Positives = 74/155 (47%), Gaps = 12/155 (7%) Query: 6 NKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVD 65 +K K+S RR AR AVQ LY I S EI + +D ++ VD Sbjct: 2 TEKVKKISPRRR-ARECAVQNLYSWAISKNSPEEIELNFI---------VDQDNEMKGVD 51 Query: 66 LEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEV 125 + +FR + H ++ + ID ++ L LD I C+ILR V EL VP +V Sbjct: 52 MPYFRKLFHQTINHVETIDSTMAPYLDRDNV--ELDPIECAILRLAVYELKFELDVPYKV 109 Query: 126 IISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIK 160 +I+E + +A F + K+IN VLDK++ K Sbjct: 110 VINEAIEVAKVFGAEESHKYINGVLDKIAPALSRK 144 >gi|291326906|ref|ZP_06126293.2| transcription antitermination factor NusB [Providencia rettgeri DSM 1131] gi|291312467|gb|EFE52920.1| transcription antitermination factor NusB [Providencia rettgeri DSM 1131] Length = 149 Score = 165 bits (418), Expect = 2e-39, Method: Composition-based stats. Identities = 40/141 (28%), Positives = 63/141 (44%), Gaps = 13/141 (9%) Query: 21 LAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRK 80 AVQA+Y + G E+ E+ E VD+ +FR ++ GV Sbjct: 22 ECAVQAIYSWQLSGNPIAEVEYEFIA-----------EQDMSDVDVNYFRELLSGVATNA 70 Query: 81 QHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYG 140 +D L++ L+ + L + +ILR + EL VP +V I+E + +A F Sbjct: 71 TKLDQLMAPYLSRQ--LEELGQVEKAILRVSMFELSFREDVPYKVAINEGIELAKVFGAE 128 Query: 141 DEPKFINAVLDKVSRKEEIKR 161 D KF+N VLDK + K+ Sbjct: 129 DSHKFVNGVLDKAAPAVRRKK 149 >gi|328472533|gb|EGF43396.1| transcription antitermination protein NusB [Vibrio parahaemolyticus 10329] Length = 151 Score = 165 bits (418), Expect = 2e-39, Method: Composition-based stats. Identities = 43/154 (27%), Positives = 72/154 (46%), Gaps = 6/154 (3%) Query: 10 LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHV---DL 66 +K + RR AR A+QA+Y I + I ++ + + EL L D+ Sbjct: 1 MKPAARRN-ARQFALQAIYSWQITKENVATIEEQFLSGDKYDEEELRASEPALAAPETDV 59 Query: 67 EWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVI 126 +FR ++ GV+ +D I ++ LDM+ ++LR + E+ VP +V+ Sbjct: 60 AYFRELLSGVVLSHAELDSKIRPYVSR--PMQDLDMMELALLRLAMYEMTRREDVPYKVV 117 Query: 127 ISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIK 160 I+E + +A F D KF+N VLDK + K Sbjct: 118 INEAIELAKVFAAEDSHKFVNGVLDKAAPHVRKK 151 >gi|254360609|ref|ZP_04976758.1| N utilization substance B [Mannheimia haemolytica PHL213] gi|261493373|ref|ZP_05989899.1| N utilization substance B [Mannheimia haemolytica serotype A2 str. BOVINE] gi|261496639|ref|ZP_05993019.1| N utilization substance B [Mannheimia haemolytica serotype A2 str. OVINE] gi|153091149|gb|EDN73154.1| N utilization substance B [Mannheimia haemolytica PHL213] gi|261307842|gb|EEY09165.1| N utilization substance B [Mannheimia haemolytica serotype A2 str. OVINE] gi|261311017|gb|EEY12194.1| N utilization substance B [Mannheimia haemolytica serotype A2 str. BOVINE] Length = 137 Score = 165 bits (418), Expect = 2e-39, Method: Composition-based stats. Identities = 49/145 (33%), Positives = 71/145 (48%), Gaps = 14/145 (9%) Query: 10 LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF 69 +K+S RR AR AVQA+Y I + E+ + T + VD+ +F Sbjct: 1 MKISPRRR-ARECAVQAIYSWYISQNTVEEVELAFVT-----------DQDMKGVDMPYF 48 Query: 70 RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISE 129 R + GV+D + ID + L K S +D I SILR EL H VP V+I+E Sbjct: 49 RKLFRGVVDNVEAIDEALRPYLDRKES--DVDPIERSILRLSTYELKFEHDVPFRVVINE 106 Query: 130 YVCIAHDFFYGDEPKFINAVLDKVS 154 + +A F D K+IN +LDK++ Sbjct: 107 GIEVAKVFGSDDSHKYINGILDKLA 131 >gi|256821700|ref|YP_003145663.1| NusB antitermination factor [Kangiella koreensis DSM 16069] gi|256795239|gb|ACV25895.1| NusB antitermination factor [Kangiella koreensis DSM 16069] Length = 142 Score = 165 bits (418), Expect = 2e-39, Method: Composition-based stats. Identities = 44/151 (29%), Positives = 69/151 (45%), Gaps = 14/151 (9%) Query: 11 KLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFR 70 K + RR AR A+QA+YQ + EI ++Y T VD +F+ Sbjct: 6 KPAMRRR-AREYAMQAIYQWQMSDNPLNEIEAQYLTTMNAK-----------KVDTVYFQ 53 Query: 71 VIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEY 130 + GV+ ID ++ L + +D I +I+R EL + VP +V+I+E Sbjct: 54 ELFSGVLTNLDEIDEALAPALERE--IEGIDPIERAIIRLSAFELKKRVDVPKKVVINEG 111 Query: 131 VCIAHDFFYGDEPKFINAVLDKVSRKEEIKR 161 + +A F D KF+N VLDK+S+ Sbjct: 112 IELAKTFGATDGHKFVNGVLDKISKALRPHE 142 >gi|260575720|ref|ZP_05843717.1| NusB antitermination factor [Rhodobacter sp. SW2] gi|259022118|gb|EEW25417.1| NusB antitermination factor [Rhodobacter sp. SW2] Length = 157 Score = 165 bits (418), Expect = 2e-39, Method: Composition-based stats. Identities = 55/161 (34%), Positives = 90/161 (55%), Gaps = 7/161 (4%) Query: 1 MTIQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESV 60 M+ + K D K + ARL AVQAL+Q+++ G + + E+ET+RF A + D Sbjct: 1 MSDKVPKPDKK--QMKSAARLYAVQALFQMEVSGQTVEAVQREFETHRFGAVYDGDE--- 55 Query: 61 YLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHS 120 D+ FR ++ ++ + ID L L KW SR+D +L ++ RA E++E Sbjct: 56 MAEGDVVHFRALVGHAVNWQAKIDQLTDRALVAKWPISRIDPVLRALFRAAGAEMLEMP- 114 Query: 121 VPVEVIISEYVCIAHDFF-YGDEPKFINAVLDKVSRKEEIK 160 P +V+I+E+V +A FF G E F+NAVLD ++R+ + + Sbjct: 115 TPPKVVITEFVDVAKAFFPEGKEASFVNAVLDHMAREAKPE 155 >gi|30250477|ref|NP_842547.1| antitermination protein NusB [Nitrosomonas europaea ATCC 19718] gi|39931886|sp|Q82S07|NUSB_NITEU RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|30139318|emb|CAD86470.1| Antitermination protein NusB [Nitrosomonas europaea ATCC 19718] Length = 167 Score = 164 bits (417), Expect = 3e-39, Method: Composition-based stats. Identities = 37/166 (22%), Positives = 71/166 (42%), Gaps = 20/166 (12%) Query: 1 MTIQDNKKDLKL-------SHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADT 53 M + +K +RR ++R A+Q +YQ + G + +I + + F Sbjct: 1 MMSTETVPPVKRVQGHKGYKNRRRLSRELALQGIYQWQVTGGNARDIGMQLQQVSF---- 56 Query: 54 ELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVL 113 + D +F ++ GV++ + I L + + L + CSIL G Sbjct: 57 -------FSKADGPYFSDLLQGVLEHAADLQTQIQPHLDRQ--IAELSPVECSILLIGTY 107 Query: 114 ELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEI 159 E++ +P II+E + +A + D K++N VLDK++ + Sbjct: 108 EMVYRPEIPCRAIINEAIELAKSYGGTDGHKYVNGVLDKLATRLRA 153 >gi|332534974|ref|ZP_08410792.1| transcription termination protein NusB [Pseudoalteromonas haloplanktis ANT/505] gi|332035592|gb|EGI72084.1| transcription termination protein NusB [Pseudoalteromonas haloplanktis ANT/505] Length = 136 Score = 164 bits (417), Expect = 3e-39, Method: Composition-based stats. Identities = 46/146 (31%), Positives = 73/146 (50%), Gaps = 14/146 (9%) Query: 10 LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF 69 +K + RR AR+ A+QA+Y I G +I + ++ +E+ +D+E+F Sbjct: 1 MKPAARR-KARILALQAVYSWQISGNLIADI-----------EQQMLIETDVTKIDVEYF 48 Query: 70 RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISE 129 + + GV + +D +S LT F LDM+ +ILR EL VP +V I+E Sbjct: 49 KDLATGVAVNYKQLDEAVSPHLTR--PFDDLDMVERAILRLSSYELKFREDVPYKVAINE 106 Query: 130 YVCIAHDFFYGDEPKFINAVLDKVSR 155 + +A F D KF+N VLDK + Sbjct: 107 GIELAKIFGAEDSHKFVNGVLDKAVK 132 >gi|103487508|ref|YP_617069.1| NusB antitermination factor [Sphingopyxis alaskensis RB2256] gi|119390826|sp|Q1GRI6|NUSB_SPHAL RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|98977585|gb|ABF53736.1| NusB antitermination factor [Sphingopyxis alaskensis RB2256] Length = 149 Score = 164 bits (417), Expect = 3e-39, Method: Composition-based stats. Identities = 58/150 (38%), Positives = 82/150 (54%), Gaps = 3/150 (2%) Query: 11 KLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFR 70 K + R ARLAAVQALYQ ++ ++I E+ +R A E ++ Y D+ +F Sbjct: 3 KRAQSRSAARLAAVQALYQHEMEATPVAQLIHEFHQHRIGAIIE---DAEYADADVPFFD 59 Query: 71 VIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEY 130 I+ GV+ R ID I++ L W+ RLD + +ILRAG ELI VPV ++SEY Sbjct: 60 DIVKGVLARADEIDAAITARLASGWTMERLDRTMKAILRAGTYELIARGDVPVGAVVSEY 119 Query: 131 VCIAHDFFYGDEPKFINAVLDKVSRKEEIK 160 V +A FF G E F N +LD + + K Sbjct: 120 VDVAKAFFDGREAGFANGLLDAIGKDVRKK 149 >gi|145634912|ref|ZP_01790619.1| transcription antitermination protein NusB [Haemophilus influenzae PittAA] gi|229845118|ref|ZP_04465253.1| transcription antitermination protein NusB [Haemophilus influenzae 6P18H1] gi|145267778|gb|EDK07775.1| transcription antitermination protein NusB [Haemophilus influenzae PittAA] gi|229811954|gb|EEP47648.1| transcription antitermination protein NusB [Haemophilus influenzae 6P18H1] Length = 144 Score = 164 bits (416), Expect = 3e-39, Method: Composition-based stats. Identities = 48/154 (31%), Positives = 72/154 (46%), Gaps = 16/154 (10%) Query: 1 MTIQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESV 60 MT Q K +K R AR VQALY + G + ++ F D ++D Sbjct: 1 MTEQ---KQVKKPSARRRARECTVQALYSWAVSGNTVEQV-----ELAFVLDQDMDG--- 49 Query: 61 YLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHS 120 VD +FR + ++ + +D IS +F LD I +ILR V EL Sbjct: 50 ---VDKPYFRKLFRQTVENIETVDFSISPYTDR--AFDELDPIETAILRLAVYELRFELD 104 Query: 121 VPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVS 154 VP +V+I+E + +A F + K+IN VLDK++ Sbjct: 105 VPYKVVINEAIEVAKVFGADESHKYINGVLDKIA 138 >gi|254511391|ref|ZP_05123458.1| transcription antitermination factor NusB [Rhodobacteraceae bacterium KLH11] gi|221535102|gb|EEE38090.1| transcription antitermination factor NusB [Rhodobacteraceae bacterium KLH11] Length = 160 Score = 164 bits (416), Expect = 4e-39, Method: Composition-based stats. Identities = 55/162 (33%), Positives = 89/162 (54%), Gaps = 6/162 (3%) Query: 1 MTIQDNKKDLK-LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVES 59 MT D K + ARL AVQAL+Q++ G +T +++E+ +RF A E + Sbjct: 1 MTKTDAPKPANQKRQMKSAARLYAVQALFQMEQSGQTTEAVVTEFLDHRFGAVYEGEE-- 58 Query: 60 VYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECH 119 L D+ FR ++ ++ + ID + L KW +R+D L ++ RA EL + Sbjct: 59 -MLDGDISVFRALVDNAVNYQAPIDQMTDRALVAKWPIARIDPTLRAVFRAAGAELTQS- 116 Query: 120 SVPVEVIISEYVCIAHDFF-YGDEPKFINAVLDKVSRKEEIK 160 P +V+I+E+V +A FF G EPKF+NAVLD ++R+ + + Sbjct: 117 DTPPKVVITEFVDVARAFFPEGKEPKFVNAVLDHMAREAQPE 158 >gi|308048552|ref|YP_003912118.1| NusB antitermination factor [Ferrimonas balearica DSM 9799] gi|307630742|gb|ADN75044.1| NusB antitermination factor [Ferrimonas balearica DSM 9799] Length = 136 Score = 164 bits (416), Expect = 4e-39, Method: Composition-based stats. Identities = 44/145 (30%), Positives = 71/145 (48%), Gaps = 14/145 (9%) Query: 10 LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF 69 +K S RR AR AVQA+Y + G + +I E+ T E DL +F Sbjct: 1 MKPSERR-KARRLAVQAIYSWQMSGNAVADIEHEFLT-----------EQDTKGADLGYF 48 Query: 70 RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISE 129 R ++ GV+ + ++D + L +D + +ILR EL+ VP +V+I+E Sbjct: 49 RELLVGVVSQSSNLDARLKPNLAR--LVEEVDQLELAILRLAAFELLHRDDVPYKVVINE 106 Query: 130 YVCIAHDFFYGDEPKFINAVLDKVS 154 + +A F + KF+N VLDK++ Sbjct: 107 AIELAKAFGAEESHKFVNGVLDKLA 131 >gi|85711195|ref|ZP_01042255.1| Transcription termination factor NusB [Idiomarina baltica OS145] gi|85695108|gb|EAQ33046.1| Transcription termination factor NusB [Idiomarina baltica OS145] Length = 139 Score = 164 bits (416), Expect = 4e-39, Method: Composition-based stats. Identities = 44/153 (28%), Positives = 72/153 (47%), Gaps = 14/153 (9%) Query: 10 LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF 69 +K + RR AR AVQA+Y + + EI +++ T ++ VD+++F Sbjct: 1 MKPAARR-KARKLAVQAVYSWQLSQNTFNEIEAQFLT-----------DNDTSKVDVDYF 48 Query: 70 RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISE 129 ++ GV + +D I+ L S LD + ++LR EL E + VP +V I+E Sbjct: 49 LELLRGVGAFYKSLDEAIAPYLDR--PISELDPVELAVLRIAAYELRERYDVPYKVAINE 106 Query: 130 YVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRS 162 + +A F D +F+N VLDK R Sbjct: 107 AIELAKSFGADDSHRFVNGVLDKAVDALRPARQ 139 >gi|71279330|ref|YP_268274.1| transcription termination/antitermination factor NusB [Colwellia psychrerythraea 34H] gi|119390761|sp|Q485J1|NUSB_COLP3 RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|71145070|gb|AAZ25543.1| transcription termination/antitermination factor NusB [Colwellia psychrerythraea 34H] Length = 138 Score = 164 bits (416), Expect = 4e-39, Method: Composition-based stats. Identities = 43/146 (29%), Positives = 67/146 (45%), Gaps = 14/146 (9%) Query: 10 LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF 69 +K S RR AR AVQA+Y + +I + ++ D+E+F Sbjct: 1 MKPSPRR-KARELAVQAVYSWQVSKNPVNDIEVNFIA-----------DNSKRRFDIEYF 48 Query: 70 RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISE 129 ++++ GV ID I + +D + +ILR V EL +C VP V+I+E Sbjct: 49 QLLLRGVTTNIGSIDEAIIPYVDR--PLDDIDQVEKAILRVAVFELKDCTDVPYRVVINE 106 Query: 130 YVCIAHDFFYGDEPKFINAVLDKVSR 155 + +A F D KF+N VLDK + Sbjct: 107 AIELAKSFAADDSHKFVNGVLDKTVK 132 >gi|294635301|ref|ZP_06713799.1| transcription antitermination factor NusB [Edwardsiella tarda ATCC 23685] gi|291091310|gb|EFE23871.1| transcription antitermination factor NusB [Edwardsiella tarda ATCC 23685] Length = 139 Score = 164 bits (416), Expect = 4e-39, Method: Composition-based stats. Identities = 40/142 (28%), Positives = 66/142 (46%), Gaps = 13/142 (9%) Query: 21 LAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRK 80 AVQALY I ++ ++ + E VD+ +FR ++ GV Sbjct: 11 ECAVQALYSWQISKNDIADVEYQFLS-----------EQDVKDVDVNYFRELLSGVASNA 59 Query: 81 QHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYG 140 ++D L++ L+ + L + +ILR + EL + VP +V I+E V +A F Sbjct: 60 DYLDGLMAPVLSRQ--LDELGQVEKAILRVSIYELSKRQDVPYKVAINEGVELAKTFGAE 117 Query: 141 DEPKFINAVLDKVSRKEEIKRS 162 D KF+N VLDK++ + R Sbjct: 118 DSHKFVNGVLDKIAPQVRPNRK 139 >gi|170744825|ref|YP_001773480.1| NusB antitermination factor [Methylobacterium sp. 4-46] gi|168199099|gb|ACA21046.1| NusB antitermination factor [Methylobacterium sp. 4-46] Length = 156 Score = 164 bits (416), Expect = 4e-39, Method: Composition-based stats. Identities = 55/152 (36%), Positives = 87/152 (57%), Gaps = 4/152 (2%) Query: 10 LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF 69 +K + R ARLA VQALY+++I G + ++E+E + + + + +F Sbjct: 1 MKPAE-RSGARLAVVQALYEMEISGKGVIDALAEFEAFWIGQVVDGIE---HPPAETAFF 56 Query: 70 RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISE 129 R ++ G ++ ++ ID + L+ W R++ +L +ILRAG E+I VPV V ISE Sbjct: 57 RDVLRGAVEEQRLIDQRLDGALSAGWPLRRIEAVLRAILRAGAYEVIFRKDVPVRVAISE 116 Query: 130 YVCIAHDFFYGDEPKFINAVLDKVSRKEEIKR 161 YV +AH F+ GDEP +NAVLDKV+R + Sbjct: 117 YVDVAHSFYGGDEPGLVNAVLDKVARAARAEE 148 >gi|307825577|ref|ZP_07655795.1| NusB antitermination factor [Methylobacter tundripaludum SV96] gi|307733463|gb|EFO04322.1| NusB antitermination factor [Methylobacter tundripaludum SV96] Length = 144 Score = 164 bits (416), Expect = 4e-39, Method: Composition-based stats. Identities = 47/156 (30%), Positives = 74/156 (47%), Gaps = 16/156 (10%) Query: 12 LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71 +S R AR AAVQALYQ + G + +EI ++ E +F Sbjct: 1 MSQARTNARKAAVQALYQWQMAGQNLSEIERQFLE-----------EERLKDAQKSYFVE 49 Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131 + +GV ID ++S + +D + +ILR GV EL+ ++P V+++E + Sbjct: 50 LFYGVPKNLDAIDQVLSEFVDR--PVDTIDPVERAILRIGVYELLYRLNMPYRVVLNEGI 107 Query: 132 CIAHDFFYGDEPKFINAVLDKVS---RKEEIKRSGC 164 +A DF K++N +LDKV+ R EIK G Sbjct: 108 NLAKDFGADGSHKYVNGILDKVAQQTRAGEIKAKGA 143 >gi|260767831|ref|ZP_05876766.1| transcription termination protein NusB [Vibrio furnissii CIP 102972] gi|260617340|gb|EEX42524.1| transcription termination protein NusB [Vibrio furnissii CIP 102972] gi|315179339|gb|ADT86253.1| N utilization substance protein B [Vibrio furnissii NCTC 11218] Length = 156 Score = 164 bits (416), Expect = 4e-39, Method: Composition-based stats. Identities = 40/155 (25%), Positives = 71/155 (45%), Gaps = 6/155 (3%) Query: 9 DLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTEL---DVESVYLHVD 65 +K + RR AR A+QA+Y I + I ++ + + E + D Sbjct: 4 SVKPAARRN-ARQFALQAIYSWQITKDNVATIEEQFLSGGKYDEEEHHASEPALAAPETD 62 Query: 66 LEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEV 125 + +FR ++ GV+ +D + ++ LDM+ ++LR + E+ VP +V Sbjct: 63 VAYFRDLLAGVVLNHTELDSKLRPFVSR--PMQDLDMMELALLRLAMYEMTRREDVPYKV 120 Query: 126 IISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIK 160 +I+E + +A F D KF+N VLDK + K Sbjct: 121 VINEAIELAKVFAAEDSHKFVNGVLDKAAPHVRKK 155 >gi|28897457|ref|NP_797062.1| transcription antitermination protein NusB [Vibrio parahaemolyticus RIMD 2210633] gi|153840491|ref|ZP_01993158.1| transcription antitermination factor NusB [Vibrio parahaemolyticus AQ3810] gi|260364269|ref|ZP_05776968.1| transcription antitermination factor NusB [Vibrio parahaemolyticus K5030] gi|260876417|ref|ZP_05888772.1| transcription antitermination factor NusB [Vibrio parahaemolyticus AN-5034] gi|260898688|ref|ZP_05907184.1| transcription antitermination factor NusB [Vibrio parahaemolyticus Peru-466] gi|260899217|ref|ZP_05907612.1| transcription antitermination factor NusB [Vibrio parahaemolyticus AQ4037] gi|31076798|sp|Q87RU3|NUSB_VIBPA RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|28805669|dbj|BAC58946.1| N utilization substance protein B [Vibrio parahaemolyticus RIMD 2210633] gi|149745845|gb|EDM56975.1| transcription antitermination factor NusB [Vibrio parahaemolyticus AQ3810] gi|308086855|gb|EFO36550.1| transcription antitermination factor NusB [Vibrio parahaemolyticus Peru-466] gi|308092966|gb|EFO42661.1| transcription antitermination factor NusB [Vibrio parahaemolyticus AN-5034] gi|308106640|gb|EFO44180.1| transcription antitermination factor NusB [Vibrio parahaemolyticus AQ4037] gi|308113746|gb|EFO51286.1| transcription antitermination factor NusB [Vibrio parahaemolyticus K5030] Length = 155 Score = 164 bits (416), Expect = 4e-39, Method: Composition-based stats. Identities = 43/155 (27%), Positives = 72/155 (46%), Gaps = 6/155 (3%) Query: 9 DLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHV---D 65 +K + RR AR A+QA+Y I + I ++ + + EL L D Sbjct: 4 SVKPAARRN-ARQFALQAIYSWQITKENVATIEEQFLSGDKYDEEELRASEPALAAPETD 62 Query: 66 LEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEV 125 + +FR ++ GV+ +D I ++ LDM+ ++LR + E+ VP +V Sbjct: 63 VAYFRELLSGVVLSHAELDSKIRPYVSR--PMQDLDMMELALLRLAMYEMTRREDVPYKV 120 Query: 126 IISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIK 160 +I+E + +A F D KF+N VLDK + K Sbjct: 121 VINEAIELAKVFAAEDSHKFVNGVLDKAAPHVRKK 155 >gi|323144126|ref|ZP_08078765.1| transcription antitermination factor NusB [Succinatimonas hippei YIT 12066] gi|322416103|gb|EFY06798.1| transcription antitermination factor NusB [Succinatimonas hippei YIT 12066] Length = 143 Score = 164 bits (415), Expect = 4e-39, Method: Composition-based stats. Identities = 45/143 (31%), Positives = 68/143 (47%), Gaps = 13/143 (9%) Query: 13 SHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVI 72 R AR A+QA+YQ + G S EI ++ + DL++ + Sbjct: 10 PAMRHKARHFAMQAIYQWQMTGQSAGEIERQFLE-----------DQPIQGADLDYMHDL 58 Query: 73 IHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVC 132 I GV+ +HID + L+ LD + +ILR G EL+ +P V+I+E + Sbjct: 59 ISGVVANFEHIDEVYEPFLSR--PLKDLDQVDKAILRLGTFELLYRQEIPFRVVINESIM 116 Query: 133 IAHDFFYGDEPKFINAVLDKVSR 155 +A +F D KF+N VLDKV R Sbjct: 117 LAKEFAEQDSHKFVNGVLDKVVR 139 >gi|91225065|ref|ZP_01260287.1| transcription antitermination protein NusB [Vibrio alginolyticus 12G01] gi|262395030|ref|YP_003286884.1| transcription termination protein NusB [Vibrio sp. Ex25] gi|269965074|ref|ZP_06179239.1| N utilization substance protein B [Vibrio alginolyticus 40B] gi|91190008|gb|EAS76279.1| transcription antitermination protein NusB [Vibrio alginolyticus 12G01] gi|262338624|gb|ACY52419.1| transcription termination protein NusB [Vibrio sp. Ex25] gi|269830377|gb|EEZ84602.1| N utilization substance protein B [Vibrio alginolyticus 40B] Length = 155 Score = 164 bits (415), Expect = 4e-39, Method: Composition-based stats. Identities = 41/149 (27%), Positives = 72/149 (48%), Gaps = 6/149 (4%) Query: 9 DLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTEL---DVESVYLHVD 65 +K + RR AR A+QA+Y I + +I ++ + + EL + D Sbjct: 4 SVKPAARRN-ARQFALQAIYSWQITKENVAKIEEQFLSGDKYDEEELHASEPALAAPETD 62 Query: 66 LEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEV 125 + +FR ++ GV+ +D I ++ LDM+ ++LR + E+ VP +V Sbjct: 63 VAYFRELLSGVVLSHAELDSKIRPYISR--PMQDLDMMELALLRLAMYEMTRREDVPYKV 120 Query: 126 IISEYVCIAHDFFYGDEPKFINAVLDKVS 154 +I+E + +A F D KF+N VLDK + Sbjct: 121 VINEAIELAKVFAAEDSHKFVNGVLDKAA 149 >gi|269138332|ref|YP_003295032.1| transcription termination factor [Edwardsiella tarda EIB202] gi|267983992|gb|ACY83821.1| transcription termination factor [Edwardsiella tarda EIB202] gi|304558364|gb|ADM41028.1| Transcription termination protein NusB [Edwardsiella tarda FL6-60] Length = 139 Score = 164 bits (415), Expect = 4e-39, Method: Composition-based stats. Identities = 40/142 (28%), Positives = 66/142 (46%), Gaps = 13/142 (9%) Query: 21 LAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRK 80 AVQALY I ++ ++ + E VD+ +FR ++ GV Sbjct: 11 ECAVQALYSWQISKNDIADVEYQFLS-----------EQDVKDVDVNYFRELLSGVASNA 59 Query: 81 QHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYG 140 ++D L++ L+ + L + +ILR + EL + VP +V I+E + +A F Sbjct: 60 DYLDGLMAPVLSRQ--LEELGQVERAILRVSIYELSKRQDVPYKVAINEGIELAKTFGAE 117 Query: 141 DEPKFINAVLDKVSRKEEIKRS 162 D KF+N VLDKV+ + R Sbjct: 118 DSHKFVNGVLDKVAPQVRPNRK 139 >gi|220927277|ref|YP_002502579.1| NusB antitermination factor [Methylobacterium nodulans ORS 2060] gi|219951884|gb|ACL62276.1| NusB antitermination factor [Methylobacterium nodulans ORS 2060] Length = 156 Score = 164 bits (415), Expect = 4e-39, Method: Composition-based stats. Identities = 55/152 (36%), Positives = 87/152 (57%), Gaps = 4/152 (2%) Query: 10 LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF 69 +K + R ARLA VQALY+++I G + ++E+E + + + + +F Sbjct: 1 MKPAE-RSGARLAVVQALYEMEISGKGVIDALAEFEAFWIGQVVDGIE---HPPAETAFF 56 Query: 70 RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISE 129 R ++ G ++ ++ ID + L+ W R++ +L +ILRAG E+I VPV V ISE Sbjct: 57 RDVLRGAVEEQRVIDQRLDGALSAGWPLRRVEAVLRAILRAGAYEVIFRKDVPVRVAISE 116 Query: 130 YVCIAHDFFYGDEPKFINAVLDKVSRKEEIKR 161 YV +AH F+ GDEP +NAVLDKV+R + Sbjct: 117 YVDVAHSFYGGDEPGLVNAVLDKVARAARAEE 148 >gi|260582481|ref|ZP_05850272.1| transcription antitermination factor NusB [Haemophilus influenzae NT127] gi|260094461|gb|EEW78358.1| transcription antitermination factor NusB [Haemophilus influenzae NT127] Length = 144 Score = 164 bits (415), Expect = 4e-39, Method: Composition-based stats. Identities = 48/154 (31%), Positives = 73/154 (47%), Gaps = 16/154 (10%) Query: 1 MTIQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESV 60 MT Q K +K R AR VQALY + G + ++ F D ++D Sbjct: 1 MTEQ---KQVKKPSARRRARECTVQALYSWAVSGNTAEQV-----ELAFVLDQDMDG--- 49 Query: 61 YLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHS 120 VD +FR + ++ + +D IS + +F LD I +ILR V EL Sbjct: 50 ---VDKPYFRKLFRQTVENIETVDFSISPYIDR--AFDELDPIETAILRLAVYELRFELD 104 Query: 121 VPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVS 154 VP +V+I+E + +A F + K+IN VLDK++ Sbjct: 105 VPYKVVINEAIEVAKVFGADESHKYINGVLDKIA 138 >gi|323138566|ref|ZP_08073634.1| NusB antitermination factor [Methylocystis sp. ATCC 49242] gi|322396200|gb|EFX98733.1| NusB antitermination factor [Methylocystis sp. ATCC 49242] Length = 150 Score = 164 bits (415), Expect = 5e-39, Method: Composition-based stats. Identities = 55/149 (36%), Positives = 84/149 (56%), Gaps = 3/149 (2%) Query: 15 RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74 +R ARLA VQALYQ+++ G EI +E+E++ + E Y ++ +FR ++ Sbjct: 5 QRSAARLAIVQALYQMEVAGKGLNEIFAEFESHWIGREIEG---VQYKPAEVTFFRDVLQ 61 Query: 75 GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134 GV+ + ID I L+ W SR++ ++ + LRAG EL VP V+I EYV +A Sbjct: 62 GVLTDQVAIDRQIDRVLSGGWPLSRVEAVMRAALRAGAYELRARKDVPARVVIKEYVDVA 121 Query: 135 HDFFYGDEPKFINAVLDKVSRKEEIKRSG 163 FF E +NAVLDK++R+E + G Sbjct: 122 GAFFGPTESGMVNAVLDKIAREERAEELG 150 >gi|114332465|ref|YP_748687.1| NusB antitermination factor [Nitrosomonas eutropha C91] gi|122312909|sp|Q0AD60|NUSB_NITEC RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|114309479|gb|ABI60722.1| NusB antitermination factor [Nitrosomonas eutropha C91] Length = 167 Score = 164 bits (415), Expect = 5e-39, Method: Composition-based stats. Identities = 44/172 (25%), Positives = 79/172 (45%), Gaps = 23/172 (13%) Query: 1 MTIQDNKKDLKLS-------HRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADT 53 M D K + +RR ++R A+Q +YQ + G + EI D Sbjct: 1 MIPTDTAPPSKPAQGHKGYKNRRRLSRELALQGIYQWRLAGGNAQEI-----------DL 49 Query: 54 ELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVL 113 +L + Y D +F ++ GV++ + ++ I + L + + L + CSIL G Sbjct: 50 QLQQVNFYSKADGSYFSDLLQGVLEHSRDLEAQIQAYLDRQ--LAELSPVECSILLIGTY 107 Query: 114 ELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVS---RKEEIKRS 162 E++ +P II+E + +A + D K++N VLDK++ R E++ S Sbjct: 108 EMVHHPEIPCRAIINEAIELAKSYGGTDGHKYVNGVLDKLAAQLRAVELQSS 159 >gi|154248201|ref|YP_001419159.1| NusB antitermination factor [Xanthobacter autotrophicus Py2] gi|154162286|gb|ABS69502.1| NusB antitermination factor [Xanthobacter autotrophicus Py2] Length = 163 Score = 164 bits (415), Expect = 5e-39, Method: Composition-based stats. Identities = 55/156 (35%), Positives = 89/156 (57%), Gaps = 10/156 (6%) Query: 8 KDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLE 67 K +K S ARL AVQALYQ+D+ +I++E+E++ + E + D+ Sbjct: 13 KPMKKS----AARLGAVQALYQMDLAQTPLNDILAEFESHWLGQEVEG---VEFPEADVR 65 Query: 68 WFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVII 127 FR ++ GV++ ++ ID ++ + LT+ W R++ +L ++LRAG EL VP V+I Sbjct: 66 LFRTVVEGVLNDQRRIDPMVDNALTKGWPLKRVEAVLRAVLRAGAFELSAKPDVPARVVI 125 Query: 128 SEYVCIAHDFFYGDEPKFINAVLDKVS---RKEEIK 160 +EYV +A F DE +NAVLD ++ R +E K Sbjct: 126 TEYVNVAGAFLDRDETGMVNAVLDALAHDLRPDEFK 161 >gi|149187999|ref|ZP_01866294.1| transcription antitermination protein NusB [Vibrio shilonii AK1] gi|148837987|gb|EDL54929.1| transcription antitermination protein NusB [Vibrio shilonii AK1] Length = 155 Score = 164 bits (415), Expect = 5e-39, Method: Composition-based stats. Identities = 39/155 (25%), Positives = 70/155 (45%), Gaps = 6/155 (3%) Query: 9 DLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTE---LDVESVYLHVD 65 +K + RR AR A+QA+Y I + + ++ + + E + D Sbjct: 4 SVKPAARRN-ARQFALQAIYSWQITKENVATVEEQFLSGGKYDEEEHHAAEPALTAPETD 62 Query: 66 LEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEV 125 + +FR ++ GV +D + ++ LDM+ ++LR + E+ VP +V Sbjct: 63 VVYFRDLLTGVALNHTELDSKLRPFVSR--PMQDLDMMELALLRLAMYEMTSREDVPYKV 120 Query: 126 IISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIK 160 +I+E + +A F D KF+N VLDK + K Sbjct: 121 VINEAIELAKVFAAEDSHKFVNGVLDKAAPHVRKK 155 >gi|296532920|ref|ZP_06895581.1| transcription antitermination factor NusB [Roseomonas cervicalis ATCC 49957] gi|296266750|gb|EFH12714.1| transcription antitermination factor NusB [Roseomonas cervicalis ATCC 49957] Length = 170 Score = 164 bits (415), Expect = 5e-39, Method: Composition-based stats. Identities = 48/160 (30%), Positives = 80/160 (50%) Query: 2 TIQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVY 61 + + R +R+AA+QAL+Q + G S +I ++ +R D + Sbjct: 8 PVGKKPRPPVAGRPRTGSRVAAIQALFQSEQSGESAETVIDQFVRFRIGPDAGGFEDGRV 67 Query: 62 LHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSV 121 D+ F ++ GV + + +D ++ L W+ +RLD +L ++LRA EL Sbjct: 68 PLADVPLFAGVVRGVARQSEALDGILQGHLAGDWTVARLDPVLRALLRAAAHELSSGTEP 127 Query: 122 PVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKR 161 P V+I+EY+ IAH FF G+EP+F N VLD ++R Sbjct: 128 PARVVINEYMDIAHGFFSGEEPRFANGVLDAMARSLRAPE 167 >gi|241761517|ref|ZP_04759604.1| NusB antitermination factor [Zymomonas mobilis subsp. mobilis ATCC 10988] gi|283856498|ref|YP_163287.2| NusB antitermination factor [Zymomonas mobilis subsp. mobilis ZM4] gi|241373825|gb|EER63358.1| NusB antitermination factor [Zymomonas mobilis subsp. mobilis ATCC 10988] gi|283775502|gb|AAV90176.2| NusB antitermination factor [Zymomonas mobilis subsp. mobilis ZM4] Length = 157 Score = 164 bits (415), Expect = 5e-39, Method: Composition-based stats. Identities = 59/160 (36%), Positives = 87/160 (54%), Gaps = 5/160 (3%) Query: 4 QDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLH 63 Q K+ K + R ARLAAVQALYQ ++ ++ E+ YR A E ++ Y Sbjct: 3 QTQKRPHK--NARSAARLAAVQALYQREMEKTPLNILLDEFHQYRLGATIE---DATYTK 57 Query: 64 VDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPV 123 + +F I+ GV R + ID +IS L+E+WS RLD + ILRAG EL+ VP Sbjct: 58 AEPSFFDDIVRGVGTRCEEIDRVISENLSERWSLDRLDRPMRQILRAGTYELLARPDVPT 117 Query: 124 EVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRSG 163 +ISEY+ +A+ F+ E F+N +LD V++K + Sbjct: 118 ATVISEYIDVANAFYDRQEKNFVNGLLDTVAKKLRSSNNA 157 >gi|16273216|ref|NP_439455.1| transcription antitermination protein NusB [Haemophilus influenzae Rd KW20] gi|145629373|ref|ZP_01785171.1| transcription antitermination protein NusB [Haemophilus influenzae 22.1-21] gi|145633222|ref|ZP_01788953.1| transcription antitermination protein NusB [Haemophilus influenzae 3655] gi|145638873|ref|ZP_01794481.1| transcription antitermination protein NusB [Haemophilus influenzae PittII] gi|148827000|ref|YP_001291753.1| transcription antitermination protein NusB [Haemophilus influenzae PittGG] gi|260581349|ref|ZP_05849165.1| transcription antitermination factor NusB [Haemophilus influenzae RdAW] gi|319776247|ref|YP_004138735.1| transcription antitermination protein [Haemophilus influenzae F3047] gi|319897123|ref|YP_004135318.1| transcription antitermination protein [Haemophilus influenzae F3031] gi|329123386|ref|ZP_08251950.1| transcription termination/antitermination factor NusB [Haemophilus aegyptius ATCC 11116] gi|1171874|sp|P45150|NUSB_HAEIN RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|166215691|sp|A5UF14|NUSB_HAEIG RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|1574763|gb|AAC22951.1| N utilization substance protein B (nusB) [Haemophilus influenzae Rd KW20] gi|144978216|gb|EDJ87980.1| transcription antitermination protein NusB [Haemophilus influenzae 22.1-21] gi|144986068|gb|EDJ92658.1| transcription antitermination protein NusB [Haemophilus influenzae 3655] gi|145271845|gb|EDK11754.1| transcription antitermination protein NusB [Haemophilus influenzae PittII] gi|148718242|gb|ABQ99369.1| transcription antitermination protein NusB [Haemophilus influenzae PittGG] gi|260092016|gb|EEW75963.1| transcription antitermination factor NusB [Haemophilus influenzae RdAW] gi|309750850|gb|ADO80834.1| Transcription antitermination protein NusB [Haemophilus influenzae R2866] gi|317432627|emb|CBY80988.1| transcription antitermination protein [Haemophilus influenzae F3031] gi|317450838|emb|CBY87062.1| transcription antitermination protein [Haemophilus influenzae F3047] gi|327470968|gb|EGF16423.1| transcription termination/antitermination factor NusB [Haemophilus aegyptius ATCC 11116] Length = 144 Score = 164 bits (415), Expect = 5e-39, Method: Composition-based stats. Identities = 48/154 (31%), Positives = 73/154 (47%), Gaps = 16/154 (10%) Query: 1 MTIQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESV 60 MT Q K +K R AR VQALY + G + ++ F D ++D Sbjct: 1 MTEQ---KQVKKPSARRRARECTVQALYSWAVSGNTAEQV-----ELAFVLDQDMDG--- 49 Query: 61 YLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHS 120 VD +FR + ++ + +D IS + +F LD I +ILR V EL Sbjct: 50 ---VDKPYFRKLFRQTIENIETVDFSISPYIDR--AFDELDPIETAILRLAVYELRFELD 104 Query: 121 VPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVS 154 VP +V+I+E + +A F + K+IN VLDK++ Sbjct: 105 VPYKVVINEAIEVAKVFGADESHKYINGVLDKIA 138 >gi|94676751|ref|YP_589030.1| transcription antitermination protein NusB [Baumannia cicadellinicola str. Hc (Homalodisca coagulata)] gi|119372277|sp|Q1LSN4|NUSB_BAUCH RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|94219901|gb|ABF14060.1| transcription antitermination factor NusB [Baumannia cicadellinicola str. Hc (Homalodisca coagulata)] Length = 139 Score = 164 bits (415), Expect = 6e-39, Method: Composition-based stats. Identities = 40/153 (26%), Positives = 69/153 (45%), Gaps = 14/153 (9%) Query: 10 LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF 69 +K++ RR AR AVQALY + + +I +++ E +D+ +F Sbjct: 1 MKITARRR-ARECAVQALYSWQLSNNNIADIEAQFLA-----------EQDIKGIDVAYF 48 Query: 70 RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISE 129 R + G +D L+ L+ +L + ++LR + EL + +P V I+E Sbjct: 49 RELYSGTAIAADMLDQLMVPYLSR--PLDKLGHVERAVLRLALYELSKRQDIPYRVAINE 106 Query: 130 YVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRS 162 + +A F D KFIN VL+K + + R Sbjct: 107 AIELAKTFGAEDSYKFINGVLEKTASQIRPHRK 139 >gi|300114881|ref|YP_003761456.1| NusB antitermination factor [Nitrosococcus watsonii C-113] gi|299540818|gb|ADJ29135.1| NusB antitermination factor [Nitrosococcus watsonii C-113] Length = 148 Score = 163 bits (414), Expect = 6e-39, Method: Composition-based stats. Identities = 40/148 (27%), Positives = 71/148 (47%), Gaps = 14/148 (9%) Query: 12 LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71 +S+RR AR AA+Q LYQ + G +I E+ + +D +F+ Sbjct: 1 MSNRRSKARTAALQGLYQWQLTGQDVDKIDIEF------------IVQDIRGIDHAYFQA 48 Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131 ++ GV R+ +D + L +D + C+ILR G EL+ +P V+++E + Sbjct: 49 LLQGVPQRQWELDECLGPFLDR--PIHEIDPVECAILRIGAFELLCRPEIPYRVVLNEAI 106 Query: 132 CIAHDFFYGDEPKFINAVLDKVSRKEEI 159 +A F +++N +LDKV++K Sbjct: 107 ELAKRFGAEHGHRYVNGILDKVAQKVRA 134 >gi|149202343|ref|ZP_01879316.1| transcription antitermination factor NusB [Roseovarius sp. TM1035] gi|149144441|gb|EDM32472.1| transcription antitermination factor NusB [Roseovarius sp. TM1035] Length = 160 Score = 163 bits (414), Expect = 6e-39, Method: Composition-based stats. Identities = 52/161 (32%), Positives = 84/161 (52%), Gaps = 4/161 (2%) Query: 1 MTIQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESV 60 MT + + ARL AVQAL+Q++ G S+ + E+ +RF A E+D Sbjct: 1 MTTDPALSGNRKRQMKSAARLYAVQALFQMEHSGQSSDTVSEEFLDFRFGA--EVDEGVD 58 Query: 61 YLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHS 120 D++ FR ++ + + ID + L KW +R+D L ++ RA EL++ Sbjct: 59 MAEGDVDLFRKLLDDAVSWQAKIDQMTDRALVAKWPIARIDPTLRALFRAAGAELVQS-D 117 Query: 121 VPVEVIISEYVCIAHDFF-YGDEPKFINAVLDKVSRKEEIK 160 P +V+I EYV +A F+ G E KF+NAVLD ++R+ + Sbjct: 118 TPPKVVIMEYVDVAKAFYPDGKESKFVNAVLDHMAREARPE 158 >gi|110835031|ref|YP_693890.1| transcriptional terminator nusB [Alcanivorax borkumensis SK2] gi|119372273|sp|Q0VMI0|NUSB_ALCBS RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|110648142|emb|CAL17618.1| transcriptional terminator nusB [Alcanivorax borkumensis SK2] Length = 150 Score = 163 bits (414), Expect = 6e-39, Method: Composition-based stats. Identities = 42/148 (28%), Positives = 72/148 (48%), Gaps = 13/148 (8%) Query: 9 DLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEW 68 + R AR +QALYQ + G + ++I +++ + VD E+ Sbjct: 3 NPSTPSARRKARRFTLQALYQWQLAGAAVSDIEAQFLA-----------NQDFAKVDREY 51 Query: 69 FRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIIS 128 F ++HGV+ + + +D ++ L L + +ILR G EL E VP V+I+ Sbjct: 52 FHDLLHGVLGQVKTLDEQLTPYLDR--RVEELSQVEKAILRLGAFELKERQDVPYRVVIN 109 Query: 129 EYVCIAHDFFYGDEPKFINAVLDKVSRK 156 E + +A F D K++N VLDK++R+ Sbjct: 110 EGIELAKVFGAEDSFKYVNGVLDKLARQ 137 >gi|90023094|ref|YP_528921.1| transcription antitermination protein NusB [Saccharophagus degradans 2-40] gi|119390816|sp|Q21F20|NUSB_SACD2 RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|89952694|gb|ABD82709.1| N utilization substance protein B [Saccharophagus degradans 2-40] Length = 150 Score = 163 bits (414), Expect = 6e-39, Method: Composition-based stats. Identities = 53/155 (34%), Positives = 80/155 (51%), Gaps = 16/155 (10%) Query: 10 LKLSHR-RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEW 68 +K+S RG AR A+QALYQ ++ G + I +E+ T ++ VD+E+ Sbjct: 1 MKVSAAARGRARHFAMQALYQWEMSGNALHVIEAEFHT-----------DNDMSKVDVEY 49 Query: 69 FRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIIS 128 F I+HGV K +D LT +D + ++LR E + VP +V+I+ Sbjct: 50 FHEILHGVAAIKSTLDETFKPFLT-GLRLDEIDPVSLAVLRQACYEFEKRVDVPYKVVIN 108 Query: 129 EYVCIAHDFFYGDEPKFINAVLDKVS---RKEEIK 160 E V +A F D KFIN VLDKV+ RK+E++ Sbjct: 109 EAVNLAKKFGAADSHKFINGVLDKVALRVRKDEVE 143 >gi|332559221|ref|ZP_08413543.1| NusB antitermination factor [Rhodobacter sphaeroides WS8N] gi|332276933|gb|EGJ22248.1| NusB antitermination factor [Rhodobacter sphaeroides WS8N] Length = 148 Score = 163 bits (414), Expect = 6e-39, Method: Composition-based stats. Identities = 55/146 (37%), Positives = 86/146 (58%), Gaps = 5/146 (3%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 + +RL AVQAL+Q++ G + ++ E+ET+RF A E D D + FR I+ G Sbjct: 2 KSASRLYAVQALFQMETTGQTVEQVAREFETHRFGAVYEGDE---MAEGDAKSFRAIVSG 58 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135 ++R+ ID + L KW R+D ++ ++ RA EL+E P +V+I+E+V IA Sbjct: 59 AVNRQAGIDQMTDRALVAKWPIDRIDPVIRALFRAAGSELLES-ETPPKVVINEFVDIAK 117 Query: 136 DFF-YGDEPKFINAVLDKVSRKEEIK 160 FF G EPKF+NAVLD ++R+ + Sbjct: 118 AFFPEGREPKFVNAVLDHMAREARPE 143 >gi|85707944|ref|ZP_01039010.1| transcription termination factor [Erythrobacter sp. NAP1] gi|85689478|gb|EAQ29481.1| transcription termination factor [Erythrobacter sp. NAP1] Length = 155 Score = 163 bits (414), Expect = 6e-39, Method: Composition-based stats. Identities = 57/149 (38%), Positives = 83/149 (55%), Gaps = 2/149 (1%) Query: 12 LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCA--DTELDVESVYLHVDLEWF 69 S R ARLAAVQALYQ + G + +++ E+ +R D E VY ++E+F Sbjct: 6 RSQARSTARLAAVQALYQQQMEGTALNKLLDEFHQHRLGREVDDEDHEGEVYADAEVEFF 65 Query: 70 RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISE 129 I+ GV R+ ID ++++ L + W+ RLD + ILRAG ELI VP I+E Sbjct: 66 DDIVRGVDARRDEIDEILTARLAQGWTLMRLDKTMLQILRAGAYELIARADVPRASAITE 125 Query: 130 YVCIAHDFFYGDEPKFINAVLDKVSRKEE 158 YV +A FF E KF+N +LD V+++ Sbjct: 126 YVDVAKAFFDDREAKFVNGILDAVAKEAR 154 >gi|254427255|ref|ZP_05040962.1| transcription antitermination factor NusB [Alcanivorax sp. DG881] gi|196193424|gb|EDX88383.1| transcription antitermination factor NusB [Alcanivorax sp. DG881] Length = 149 Score = 163 bits (414), Expect = 7e-39, Method: Composition-based stats. Identities = 43/141 (30%), Positives = 72/141 (51%), Gaps = 13/141 (9%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 R AR +QALYQ + G + ++I +++ + VD E+F ++HG Sbjct: 9 RRKARRFTLQALYQWQLAGAAVSDIEAQFLA-----------NQDFAKVDREYFHDLLHG 57 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135 V+ + + +D L++ L L + +ILR G EL E VP V+I+E + +A Sbjct: 58 VLGQVKTLDELLTPYLDR--RVEELSQVEKAILRLGAFELKERQDVPYRVVINEGIELAK 115 Query: 136 DFFYGDEPKFINAVLDKVSRK 156 F D K++N VLDK++R+ Sbjct: 116 VFGAEDSFKYVNGVLDKLARQ 136 >gi|330993560|ref|ZP_08317495.1| N utilization substance protein B-like protein [Gluconacetobacter sp. SXCC-1] gi|329759590|gb|EGG76099.1| N utilization substance protein B-like protein [Gluconacetobacter sp. SXCC-1] Length = 177 Score = 163 bits (414), Expect = 7e-39, Method: Composition-based stats. Identities = 57/161 (35%), Positives = 87/161 (54%), Gaps = 4/161 (2%) Query: 1 MTIQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELD---V 57 MT D + K+ R +R+AAVQAL+QI+ G S +I+++ +R D Sbjct: 1 MTQTDGDRQPKV-RSRTASRVAAVQALFQIEQAGESPEHVINQFNRHRLGTSVVQDGSYA 59 Query: 58 ESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIE 117 E D F +++ G + R++ ID L+ L W +RLD +L +I+ A E+ Sbjct: 60 EGQVPDADARLFGIVVRGAVARQERIDGLLHEILPASWPLARLDPVLRAIMHAAGGEMTG 119 Query: 118 CHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEE 158 VP VII+EY+ IAH F GDEP+ +N VLD +SR+ + Sbjct: 120 ADPVPARVIINEYMDIAHGFLAGDEPRMLNGVLDALSRRLQ 160 >gi|254475988|ref|ZP_05089374.1| transcription antitermination factor NusB [Ruegeria sp. R11] gi|214030231|gb|EEB71066.1| transcription antitermination factor NusB [Ruegeria sp. R11] Length = 163 Score = 163 bits (414), Expect = 7e-39, Method: Composition-based stats. Identities = 56/165 (33%), Positives = 85/165 (51%), Gaps = 9/165 (5%) Query: 1 MTIQDN----KKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELD 56 MT D+ K R +RL AVQAL+Q++ + +I E+E +RF A E Sbjct: 1 MTTSDSQGAAPKGNDKHKMRSASRLYAVQALFQMEHSNLTLDRVIVEFEDFRFGAVYE-- 58 Query: 57 VESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELI 116 + D + FR ++ + + ID + L KW R+D L ++ RA EL Sbjct: 59 -DGEMAEGDSKVFRKLVEDAVSHQARIDQMTDRALVAKWPIGRIDPTLRALFRAAGAELT 117 Query: 117 ECHSVPVEVIISEYVCIAHDFF-YGDEPKFINAVLDKVSRKEEIK 160 E P +V+I+E+V IA FF G EPKF+NAVLD ++R+ + + Sbjct: 118 ESK-TPPKVVINEFVDIARAFFPEGKEPKFVNAVLDHMAREAKPE 161 >gi|77164321|ref|YP_342846.1| NusB antitermination factor [Nitrosococcus oceani ATCC 19707] gi|119390790|sp|Q3JCY0|NUSB_NITOC RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|76882635|gb|ABA57316.1| NusB antitermination factor [Nitrosococcus oceani ATCC 19707] Length = 148 Score = 163 bits (413), Expect = 7e-39, Method: Composition-based stats. Identities = 40/148 (27%), Positives = 73/148 (49%), Gaps = 14/148 (9%) Query: 12 LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71 +S+RR AR AA+Q LYQ ++G +I E+ + +D +F+ Sbjct: 1 MSNRRSKARTAALQGLYQWQLMGQDVDKIDIEF------------IVQDIRGIDHAYFQE 48 Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131 ++ GV R+ +D + L + +D + C+ILR G EL+ +P V+++E + Sbjct: 49 LLRGVPQRQGELDECLGPFLDR--PINEVDPVECAILRIGAFELLCRPEIPYRVVLNEAI 106 Query: 132 CIAHDFFYGDEPKFINAVLDKVSRKEEI 159 +A F +++N +LDKV++K Sbjct: 107 ELAKRFGAEHGHRYVNGILDKVAQKVRA 134 >gi|260913902|ref|ZP_05920376.1| transcription termination/antitermination factor NusB [Pasteurella dagmatis ATCC 43325] gi|260631989|gb|EEX50166.1| transcription termination/antitermination factor NusB [Pasteurella dagmatis ATCC 43325] Length = 144 Score = 163 bits (413), Expect = 8e-39, Method: Composition-based stats. Identities = 44/150 (29%), Positives = 68/150 (45%), Gaps = 13/150 (8%) Query: 11 KLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFR 70 K R AR AVQALY + S EI E+ E VD+ +FR Sbjct: 8 KKVSPRRRARECAVQALYSWYVSQNSPAEIELEFVA-----------EQDLKGVDVPYFR 56 Query: 71 VIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEY 130 + ++ + +D++++ L + +D I +ILR V EL VP +V+I+E Sbjct: 57 KLFRQTVENVETVDVIMAPYLDR--DVNEVDPIEKAILRLAVYELKFELDVPYKVVINEA 114 Query: 131 VCIAHDFFYGDEPKFINAVLDKVSRKEEIK 160 + + F D K++N VLDKV+ K Sbjct: 115 IEVTKVFGADDSHKYVNGVLDKVAPALSRK 144 >gi|260772216|ref|ZP_05881132.1| transcription termination protein NusB [Vibrio metschnikovii CIP 69.14] gi|260611355|gb|EEX36558.1| transcription termination protein NusB [Vibrio metschnikovii CIP 69.14] Length = 156 Score = 163 bits (413), Expect = 8e-39, Method: Composition-based stats. Identities = 41/155 (26%), Positives = 71/155 (45%), Gaps = 6/155 (3%) Query: 9 DLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHV---D 65 +K + RR AR A+QA+Y I + I ++ + + E L D Sbjct: 4 SVKPAARRN-ARQFALQAIYSWQITKENVATIEEQFLSGGKYDEEEHHAAEPALSAPQTD 62 Query: 66 LEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEV 125 + +FR ++ GV+ +D + ++ LDM+ ++LR + E+ VP +V Sbjct: 63 VTYFRDLLVGVVLNHTELDSKLRPFVSR--PMQDLDMMELALLRLAMYEMTRREDVPYKV 120 Query: 126 IISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIK 160 +I+E + +A F D KF+N VLDK + K Sbjct: 121 VINEAIELAKVFAAEDSHKFVNGVLDKAAPHVRKK 155 >gi|183601040|ref|ZP_02962533.1| hypothetical protein PROSTU_04661 [Providencia stuartii ATCC 25827] gi|188019378|gb|EDU57418.1| hypothetical protein PROSTU_04661 [Providencia stuartii ATCC 25827] Length = 138 Score = 163 bits (413), Expect = 8e-39, Method: Composition-based stats. Identities = 39/141 (27%), Positives = 66/141 (46%), Gaps = 13/141 (9%) Query: 21 LAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRK 80 AVQA+Y + G + +++ E+ E VD+ +FR ++ GV + Sbjct: 11 ECAVQAIYSWQLSGNNVSDVEYEFIA-----------EQDMSDVDVIYFRELLSGVANNA 59 Query: 81 QHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYG 140 +D L++ L+ + L + +ILR + EL VP +V I+E + +A F Sbjct: 60 AKLDQLMAPFLSRQ--LEELGQVEKAILRVAMYELSYREDVPYKVAINEGIELAKVFGAE 117 Query: 141 DEPKFINAVLDKVSRKEEIKR 161 D KF+N VLDK + K+ Sbjct: 118 DSHKFVNGVLDKAAPSVRRKK 138 >gi|260753881|ref|YP_003226774.1| NusB antitermination factor [Zymomonas mobilis subsp. mobilis NCIMB 11163] gi|258553244|gb|ACV76190.1| NusB antitermination factor [Zymomonas mobilis subsp. mobilis NCIMB 11163] Length = 157 Score = 163 bits (413), Expect = 8e-39, Method: Composition-based stats. Identities = 60/160 (37%), Positives = 87/160 (54%), Gaps = 5/160 (3%) Query: 4 QDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLH 63 Q K+ K + R ARLAAVQALYQ ++ ++ E+ YR A E ++ Y Sbjct: 3 QTQKRPHK--NARSAARLAAVQALYQREMEKTPLNILLDEFHQYRLGATIE---DATYTK 57 Query: 64 VDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPV 123 + +F I+ GV R + ID +IS L+E+WS RLD + ILRAG EL+ VP Sbjct: 58 AEPSFFDDIVRGVGTRCEEIDRVISENLSERWSLDRLDRPMRQILRAGTYELLARPDVPT 117 Query: 124 EVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRSG 163 IISEY+ +A+ F+ E F+N +LD V++K + Sbjct: 118 ATIISEYIDVANAFYDRQEKNFVNGLLDTVAKKLRSSNNA 157 >gi|119472104|ref|ZP_01614335.1| transcription termination factor [Alteromonadales bacterium TW-7] gi|119445124|gb|EAW26417.1| transcription termination factor [Alteromonadales bacterium TW-7] Length = 136 Score = 163 bits (413), Expect = 9e-39, Method: Composition-based stats. Identities = 45/146 (30%), Positives = 74/146 (50%), Gaps = 14/146 (9%) Query: 10 LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF 69 +K + RR AR+ A+QA+Y + G + +I + ++ +E+ +D+E+F Sbjct: 1 MKPAARR-KARILALQAVYSWQLSGNAIADI-----------EQQMLIENDVTKIDVEYF 48 Query: 70 RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISE 129 + + GV + +D +S LT F LDM+ +ILR EL VP +V I+E Sbjct: 49 KDLASGVAVNYKLLDESVSPHLTR--PFDDLDMVERAILRLSSYELKFREDVPYKVAINE 106 Query: 130 YVCIAHDFFYGDEPKFINAVLDKVSR 155 + +A F D KF+N VLDK + Sbjct: 107 GIELAKIFGAEDSHKFVNGVLDKAVK 132 >gi|292492483|ref|YP_003527922.1| transcription antitermination factor NusB [Nitrosococcus halophilus Nc4] gi|291581078|gb|ADE15535.1| transcription antitermination factor NusB [Nitrosococcus halophilus Nc4] Length = 150 Score = 163 bits (413), Expect = 9e-39, Method: Composition-based stats. Identities = 39/148 (26%), Positives = 70/148 (47%), Gaps = 14/148 (9%) Query: 12 LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71 +S+ R AR AA+Q LYQ + G I + + +D +F+ Sbjct: 1 MSNNRSKARAAALQGLYQWQLTGQDVDTIDVGF------------IFQGTRGIDQAYFQE 48 Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131 ++ GV ++Q +D + L + +D + C+ILR G EL+ +P V+++E + Sbjct: 49 LLQGVPQQQQALDECLGPFLDR--PINEVDPVECTILRIGAFELLFRSDIPYRVVLNEAI 106 Query: 132 CIAHDFFYGDEPKFINAVLDKVSRKEEI 159 +A F +++N +LDKV+RK Sbjct: 107 ELAKRFGAEHGHRYVNGILDKVARKVRA 134 >gi|126727899|ref|ZP_01743727.1| transcription antitermination factor NusB [Rhodobacterales bacterium HTCC2150] gi|126702840|gb|EBA01945.1| transcription antitermination factor NusB [Rhodobacterales bacterium HTCC2150] Length = 155 Score = 163 bits (413), Expect = 9e-39, Method: Composition-based stats. Identities = 53/161 (32%), Positives = 85/161 (52%), Gaps = 9/161 (5%) Query: 1 MTIQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESV 60 MT+ N+ + + AR AVQAL+Q++ G ++ISE+E +RF A + D Sbjct: 1 MTVSGNQ----MRKMKSAARFFAVQALFQLEHSGQEVDKVISEFEEHRFGATFDGDE--- 53 Query: 61 YLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHS 120 D F +++ G ++ + ID + L KW R+D L ++ RA EL E Sbjct: 54 MQEGDPATFGLLMRGAVNLQAKIDQMTDRALVVKWPLGRIDPTLRALFRAAGAELTEG-E 112 Query: 121 VPVEVIISEYVCIAHDFFYG-DEPKFINAVLDKVSRKEEIK 160 P +V+I+E+V +A FF EPKF+N VLD ++R+ + Sbjct: 113 TPPKVVINEFVEVARAFFPETKEPKFVNGVLDHMAREARPE 153 >gi|328954274|ref|YP_004371608.1| NusB antitermination factor [Desulfobacca acetoxidans DSM 11109] gi|328454598|gb|AEB10427.1| NusB antitermination factor [Desulfobacca acetoxidans DSM 11109] Length = 142 Score = 163 bits (413), Expect = 9e-39, Method: Composition-based stats. Identities = 36/147 (24%), Positives = 66/147 (44%), Gaps = 12/147 (8%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 + +AR A+Q LYQI+I G + + + + + +F ++ G Sbjct: 6 KSLARERALQCLYQIEITGREVEGAAALFWEHFHSEER-----------NSAYFHRLVAG 54 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135 V + +D IS ++ W R+ + +ILR + EL+ C VP +V+++E V + Sbjct: 55 VRGHCEELDAYISRF-SQHWRLERMASVDRNILRLAIFELLHCPEVPPKVVVNEAVELGK 113 Query: 136 DFFYGDEPKFINAVLDKVSRKEEIKRS 162 F + FIN +LD + + R Sbjct: 114 RFGAENSGAFINGILDSFLKARQPDRG 140 >gi|301170042|emb|CBW29646.1| transcription antitermination protein [Haemophilus influenzae 10810] Length = 144 Score = 163 bits (413), Expect = 9e-39, Method: Composition-based stats. Identities = 45/154 (29%), Positives = 71/154 (46%), Gaps = 16/154 (10%) Query: 1 MTIQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESV 60 MT Q K +K R AR VQALY + G + ++ + ++ Sbjct: 1 MTEQ---KQVKKPSARRRARECTVQALYSWAVSGNTAEQVELAFV-----------LDQD 46 Query: 61 YLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHS 120 VD +FR + ++ + +D IS + +F LD I +ILR V EL Sbjct: 47 MEGVDKPYFRKLFRQTIENIETVDFSISPYIDR--AFDELDPIETAILRLAVYELRFELD 104 Query: 121 VPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVS 154 VP +V+I+E + +A F + K+IN VLDK++ Sbjct: 105 VPYKVVINEAIEVAKVFGADESHKYINGVLDKIA 138 >gi|258627344|ref|ZP_05722128.1| N utilization substance protein B [Vibrio mimicus VM603] gi|262166342|ref|ZP_06034079.1| transcription termination protein NusB [Vibrio mimicus VM223] gi|258580382|gb|EEW05347.1| N utilization substance protein B [Vibrio mimicus VM603] gi|262026058|gb|EEY44726.1| transcription termination protein NusB [Vibrio mimicus VM223] Length = 152 Score = 162 bits (412), Expect = 1e-38, Method: Composition-based stats. Identities = 42/154 (27%), Positives = 71/154 (46%), Gaps = 6/154 (3%) Query: 10 LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHV---DL 66 +K + RR AR A+QA+Y I + I ++ T + E L D+ Sbjct: 1 MKPAARRN-ARQFALQAIYSWQITKENVATIEEQFLTSGKYDEEEHRAAEPALAAPETDV 59 Query: 67 EWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVI 126 +FR ++ GV+ +D + ++ LDM+ ++LR + E+ VP +V+ Sbjct: 60 SYFRDLLAGVVLNHTELDSKLRPFVSR--PMQDLDMMELALLRLAMYEMTRREDVPYKVV 117 Query: 127 ISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIK 160 I+E + +A F D KF+N VLDK + K Sbjct: 118 INEAIELAKVFAAEDSHKFVNGVLDKAAPHVRKK 151 >gi|242240313|ref|YP_002988494.1| transcription antitermination protein NusB [Dickeya dadantii Ech703] gi|242132370|gb|ACS86672.1| NusB antitermination factor [Dickeya dadantii Ech703] Length = 139 Score = 162 bits (412), Expect = 1e-38, Method: Composition-based stats. Identities = 37/132 (28%), Positives = 62/132 (46%), Gaps = 13/132 (9%) Query: 21 LAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRK 80 AVQALY + ++ ++ + E D+ +FR ++ GV + Sbjct: 11 ECAVQALYSWQLSKNDIADVELQFLS-----------EQDVKGADITYFRELLTGVATQA 59 Query: 81 QHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYG 140 + +D L++ L+ + L + +ILR V EL + VP +V I+E + +A F Sbjct: 60 ERLDALMAPYLSRQ--LDELGQVERAILRLAVYELSKREDVPYKVAINEAIELAKVFGAE 117 Query: 141 DEPKFINAVLDK 152 D KF+N VLDK Sbjct: 118 DSHKFVNGVLDK 129 >gi|289208845|ref|YP_003460911.1| NusB antitermination factor [Thioalkalivibrio sp. K90mix] gi|288944476|gb|ADC72175.1| NusB antitermination factor [Thioalkalivibrio sp. K90mix] Length = 187 Score = 162 bits (412), Expect = 1e-38, Method: Composition-based stats. Identities = 41/147 (27%), Positives = 69/147 (46%), Gaps = 13/147 (8%) Query: 8 KDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLE 67 + + H R +AR A+QALY + +I++E+ + + D E Sbjct: 42 PEQRARHARSVARRRAMQALYSWQMTAAEPKDILAEFRD-----------DEEHAKADAE 90 Query: 68 WFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVII 127 +FR I+ GV ++ +D + L +LD + ++L G EL E VP V+I Sbjct: 91 YFREILIGVTRNREALDARMEPYLGR--PLDQLDPVERALLWLGQWELAERIDVPYRVVI 148 Query: 128 SEYVCIAHDFFYGDEPKFINAVLDKVS 154 +E V +A F ++IN VLD++S Sbjct: 149 NEAVDLAKRFGAEQSHRYINGVLDRLS 175 >gi|238918991|ref|YP_002932505.1| transcription antitermination factor NusB, [Edwardsiella ictaluri 93-146] gi|259514829|sp|C5BCH6|NUSB_EDWI9 RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|238868559|gb|ACR68270.1| transcription antitermination factor NusB, putative [Edwardsiella ictaluri 93-146] Length = 139 Score = 162 bits (412), Expect = 1e-38, Method: Composition-based stats. Identities = 40/142 (28%), Positives = 68/142 (47%), Gaps = 13/142 (9%) Query: 21 LAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRK 80 AVQALY I ++ ++ + + D VD+ +FR ++ GV Sbjct: 11 ECAVQALYSWQISKNDIADVEYQFLSEQDVKD-----------VDVNYFRELLSGVASNA 59 Query: 81 QHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYG 140 +++D L++ L+ + L + +ILR + EL + VP +V I+E + +A F Sbjct: 60 EYLDGLMAPVLSRQ--LDELGQVERAILRVSIYELSKRQDVPYKVAINEGIELAKIFGAE 117 Query: 141 DEPKFINAVLDKVSRKEEIKRS 162 D KF+N VLDKV+ + R Sbjct: 118 DSHKFVNGVLDKVAPQVRPNRK 139 >gi|182677206|ref|YP_001831352.1| NusB antitermination factor [Beijerinckia indica subsp. indica ATCC 9039] gi|182633089|gb|ACB93863.1| NusB antitermination factor [Beijerinckia indica subsp. indica ATCC 9039] Length = 155 Score = 162 bits (412), Expect = 1e-38, Method: Composition-based stats. Identities = 53/147 (36%), Positives = 86/147 (58%), Gaps = 3/147 (2%) Query: 10 LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF 69 + + +R ARLAAVQALYQ+++ E ++E+E++ + E D Y ++ +F Sbjct: 1 MANAEQRSAARLAAVQALYQMEVTEKGLNETLAEFESFWIGNEIEGDQ---YKEAEIAFF 57 Query: 70 RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISE 129 R I+ GV+ ++ ID + L + W R+D ++ +ILRAG EL + +P V I E Sbjct: 58 RDILGGVLADQEPIDRQLDKTLVDGWPLRRVDPVVRAILRAGAYELKKRTDIPARVSIKE 117 Query: 130 YVCIAHDFFYGDEPKFINAVLDKVSRK 156 YV +A FF +E INAVLD+++R+ Sbjct: 118 YVDVAGAFFGREESGMINAVLDELARR 144 >gi|27363793|ref|NP_759321.1| transcription antitermination protein NusB [Vibrio vulnificus CMCP6] gi|37679049|ref|NP_933658.1| transcription antitermination protein NusB [Vibrio vulnificus YJ016] gi|320157202|ref|YP_004189581.1| 6,7-dimethyl-8-ribityllumazine synthase [Vibrio vulnificus MO6-24/O] gi|29611804|sp|Q8DFA0|NUSB_VIBVU RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|39931709|sp|Q7MN52|NUSB_VIBVY RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|27359910|gb|AAO08848.1| transcription antitermination factor NusB [Vibrio vulnificus CMCP6] gi|37197791|dbj|BAC93629.1| transcription termination factor [Vibrio vulnificus YJ016] gi|319932514|gb|ADV87378.1| 6,7-dimethyl-8-ribityllumazine synthase [Vibrio vulnificus MO6-24/O] Length = 155 Score = 162 bits (412), Expect = 1e-38, Method: Composition-based stats. Identities = 42/155 (27%), Positives = 71/155 (45%), Gaps = 6/155 (3%) Query: 9 DLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHV---D 65 +K + RR AR A+QA+Y I + I +++ + E L D Sbjct: 4 SVKPAARRN-ARQFALQAIYSWQITKENVATIEAQFLAGEKYDEEEHRAAEPALAAPETD 62 Query: 66 LEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEV 125 + +FR ++ GV+ +D I ++ LDM+ ++LR + E+ VP +V Sbjct: 63 VAYFRDLLTGVVLSHTELDSKIRPYVSR--PMQDLDMMELALLRLAMYEMTRREDVPYKV 120 Query: 126 IISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIK 160 +I+E + +A F D KF+N VLDK + K Sbjct: 121 VINEAIELAKVFAAEDSHKFVNGVLDKAAPHVRKK 155 >gi|260425570|ref|ZP_05779550.1| transcription antitermination factor NusB [Citreicella sp. SE45] gi|260423510|gb|EEX16760.1| transcription antitermination factor NusB [Citreicella sp. SE45] Length = 163 Score = 162 bits (411), Expect = 1e-38, Method: Composition-based stats. Identities = 58/164 (35%), Positives = 88/164 (53%), Gaps = 7/164 (4%) Query: 1 MTIQDNKKDLKLSHRRG---IARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDV 57 MT D L + +R +RL AVQALYQ++ G S + +E+ +RF A+ E V Sbjct: 1 MTNPDTPPALSGNQKRRMKSASRLYAVQALYQMEAAGQSVERVQNEFVDHRFGAEIEEGV 60 Query: 58 ESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIE 117 E L D+ F I ++ + ID + L KW +R+D L ++ RA E ++ Sbjct: 61 E--MLDGDVGLFGRITSAAVNWQAKIDQMTDRALVAKWPIARIDPTLRALFRAAGAEFVD 118 Query: 118 CHSVPVEVIISEYVCIAHDFF-YGDEPKFINAVLDKVSRKEEIK 160 P V+ISEYV +A FF G EP+F+NAVLD ++R+ + + Sbjct: 119 S-DTPPRVVISEYVDVARAFFPEGREPQFVNAVLDHMAREAKPE 161 >gi|37527753|ref|NP_931098.1| transcription antitermination protein NusB [Photorhabdus luminescens subsp. laumondii TTO1] gi|39931724|sp|Q7N0J0|NUSB_PHOLL RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|36787189|emb|CAE16269.1| N utilization substance protein B [Photorhabdus luminescens subsp. laumondii TTO1] Length = 138 Score = 162 bits (411), Expect = 1e-38, Method: Composition-based stats. Identities = 40/141 (28%), Positives = 64/141 (45%), Gaps = 13/141 (9%) Query: 21 LAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRK 80 AVQA+Y + G S ++ ++ + E VD+ +FR ++ GV Sbjct: 11 ECAVQAIYSWQLSGNSIADVELQFLS-----------EQDVTGVDVTYFRELLSGVAVNA 59 Query: 81 QHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYG 140 +D L++ L+ + L + +ILR + EL VP +V I+E + +A F Sbjct: 60 AKLDALMAPYLSRQ--LEELGQVEKAILRIAMFELSYRDDVPYKVAINEAIELAKVFGAE 117 Query: 141 DEPKFINAVLDKVSRKEEIKR 161 D KF+N VLDK KR Sbjct: 118 DSHKFVNGVLDKSGPAVRRKR 138 >gi|238791410|ref|ZP_04635048.1| N utilization substance protein B [Yersinia intermedia ATCC 29909] gi|238729026|gb|EEQ20542.1| N utilization substance protein B [Yersinia intermedia ATCC 29909] Length = 138 Score = 162 bits (411), Expect = 1e-38, Method: Composition-based stats. Identities = 39/141 (27%), Positives = 65/141 (46%), Gaps = 13/141 (9%) Query: 21 LAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRK 80 AVQALY + ++ ++ + E VD+ +FR ++ GV Sbjct: 11 ECAVQALYSWQLSKNDIADVELQFLS-----------EQDVKDVDISYFRELLSGVAVNA 59 Query: 81 QHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYG 140 +D L++ L+ + L + +ILR + EL + VP +V I+E + +A F Sbjct: 60 TSLDALMAPFLSRQ--LEELGQVERAILRIALFELSKRDDVPYKVAINEAIELAKTFGAE 117 Query: 141 DEPKFINAVLDKVSRKEEIKR 161 D KF+N VLDKV+ K+ Sbjct: 118 DSHKFVNGVLDKVAPTVRKKK 138 >gi|33151658|ref|NP_873011.1| transcription antitermination protein NusB [Haemophilus ducreyi 35000HP] gi|39931811|sp|Q7VNQ2|NUSB_HAEDU RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|33147879|gb|AAP95400.1| transcription termination factor [Haemophilus ducreyi 35000HP] Length = 137 Score = 162 bits (411), Expect = 1e-38, Method: Composition-based stats. Identities = 47/145 (32%), Positives = 68/145 (46%), Gaps = 14/145 (9%) Query: 10 LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF 69 +K+S RR AR AVQALY I S E+ + T + VDL +F Sbjct: 1 MKVSPRRR-ARECAVQALYSWYISQNSIEEVELAFVT-----------DQDMKGVDLPYF 48 Query: 70 RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISE 129 R ++ G + ID I L + +D I +ILR EL VP +V+I+E Sbjct: 49 RKLLRGTALYVEAIDHDIRPYLDRME--NDVDPIERTILRLATYELKYELDVPYKVVINE 106 Query: 130 YVCIAHDFFYGDEPKFINAVLDKVS 154 + +A F D K+IN +LDK++ Sbjct: 107 GIEVAKVFGSDDSHKYINGILDKLA 131 >gi|330721632|gb|EGG99649.1| Transcription termination protein NusB [gamma proteobacterium IMCC2047] Length = 153 Score = 162 bits (411), Expect = 2e-38, Method: Composition-based stats. Identities = 48/160 (30%), Positives = 75/160 (46%), Gaps = 14/160 (8%) Query: 4 QDNKKDLKLSHR-RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYL 62 Q K+ +LS R AR A+QALYQ ++ S EI E+ ++ Sbjct: 6 QPKPKNKRLSPALRRNARRLAMQALYQWELASSSLLEIEREFRE-----------DNNMQ 54 Query: 63 HVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVP 122 VD ++F ++H V K +D I L S L + +ILR EL++ VP Sbjct: 55 KVDADYFTELLHRVPTLKTELDEQIKPLLDR--DISELTPVELTILRLSGYELLKRPDVP 112 Query: 123 VEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRS 162 VII+E V +A F D K++N +LDK++ + ++ Sbjct: 113 YRVIINEGVELAKTFGATDGHKYVNGILDKLAGRLRLEAK 152 >gi|120553778|ref|YP_958129.1| NusB antitermination factor [Marinobacter aquaeolei VT8] gi|166215695|sp|A1TYX3|NUSB_MARAV RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|120323627|gb|ABM17942.1| NusB antitermination factor [Marinobacter aquaeolei VT8] Length = 158 Score = 162 bits (411), Expect = 2e-38, Method: Composition-based stats. Identities = 43/161 (26%), Positives = 76/161 (47%), Gaps = 13/161 (8%) Query: 2 TIQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVY 61 + Q K + R AR A+Q LYQ ++I +E+ V++ Sbjct: 8 SPQPGKTGQPKAGDRRRARALAMQGLYQRHFSKTPISDIEAEFM-----------VDNDM 56 Query: 62 LHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSV 121 VD+ +FR ++ GV + +D L+ L +D + +I+R G EL V Sbjct: 57 SKVDIMYFRDLLRGVHREQAELDKLLEPFLDR--PLKEVDPVELAIVRLGAYELKHRIDV 114 Query: 122 PVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRS 162 P +V+I+E + +A F + KF+N++LDK+SR+ + + Sbjct: 115 PYKVVINEGIEMAKRFGGTEGHKFVNSILDKLSRRLRLAET 155 >gi|119945180|ref|YP_942860.1| NusB antitermination factor [Psychromonas ingrahamii 37] gi|229620369|sp|A1SUU6|NUSB_PSYIN RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|119863784|gb|ABM03261.1| NusB antitermination factor [Psychromonas ingrahamii 37] Length = 145 Score = 162 bits (410), Expect = 2e-38, Method: Composition-based stats. Identities = 45/153 (29%), Positives = 80/153 (52%), Gaps = 14/153 (9%) Query: 9 DLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEW 68 +K + RR AR +AVQA+YQ I S +II ++ T + D+ + Sbjct: 2 KMKPAERRR-ARQSAVQAIYQWQITKLSAGQIIEQFST-----------DQDLSKTDVPY 49 Query: 69 FRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIIS 128 F+ ++ GV+ R +D +S L+ K +DM+ ++LR + EL + +P +V+++ Sbjct: 50 FKELLTGVIHRVDFLDEKLSPYLSRK--IEDVDMVDKAVLRLAMFELTQRTDIPHKVVLN 107 Query: 129 EYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKR 161 E + +A DF + KF+N VLDK R +++ Sbjct: 108 EAIELAKDFATDESYKFVNGVLDKALRSLKLRE 140 >gi|307546178|ref|YP_003898657.1| transcription antitermination protein NusB [Halomonas elongata DSM 2581] gi|307218202|emb|CBV43472.1| transcription antitermination protein NusB [Halomonas elongata DSM 2581] Length = 166 Score = 162 bits (410), Expect = 2e-38, Method: Composition-based stats. Identities = 43/156 (27%), Positives = 68/156 (43%), Gaps = 4/156 (2%) Query: 6 NKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVE--SVYLH 63 ++ + R AR AVQ LYQ ++ G S + +E+ D E V Sbjct: 5 EREPSRAQQSRRAARELAVQGLYQWEMTGKSVATVEAEFRGQVADEDLEDHENWHKVMEL 64 Query: 64 VDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPV 123 DL F ++ GV + ID ++ L LD I +ILR G EL VP Sbjct: 65 ADLALFHELLSGVAQHCEKIDEQLAPVLDR--RLEDLDAIELAILRLGTYELAYRLEVPY 122 Query: 124 EVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEI 159 +I+E V +A F + +++N +LDK++ + Sbjct: 123 RAVINEGVELAKSFGATEGHRYVNGILDKLAARLRA 158 >gi|238898983|ref|YP_002924665.1| transcription termination; L factor [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] gi|259514851|sp|C4K7H4|NUSB_HAMD5 RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|229466743|gb|ACQ68517.1| transcription termination; L factor [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] Length = 151 Score = 162 bits (410), Expect = 2e-38, Method: Composition-based stats. Identities = 46/145 (31%), Positives = 67/145 (46%), Gaps = 14/145 (9%) Query: 10 LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF 69 + S RR AR VQALY + E+ F AD E D+ +F Sbjct: 1 MNPSARRR-ARECVVQALYAWQVSQNDIAEV-----ELSFLADQETQG------ADIAYF 48 Query: 70 RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISE 129 R ++ GV + +D L++ L+ + F L I +ILR + EL + VP +V I+E Sbjct: 49 RHVLLGVASDVEALDTLMTPYLSRQ--FQELGQIEKAILRLAMFELNKRDDVPYKVTINE 106 Query: 130 YVCIAHDFFYGDEPKFINAVLDKVS 154 + + F D KFIN VLDK + Sbjct: 107 AIELGKTFGADDSHKFINGVLDKAA 131 >gi|15642265|ref|NP_231898.1| transcription antitermination protein NusB [Vibrio cholerae O1 biovar El Tor str. N16961] gi|121586175|ref|ZP_01675966.1| N utilization substance protein B [Vibrio cholerae 2740-80] gi|121729760|ref|ZP_01682199.1| N utilization substance protein B [Vibrio cholerae V52] gi|147673228|ref|YP_001217781.1| transcription antitermination protein NusB [Vibrio cholerae O395] gi|153217373|ref|ZP_01951124.1| N utilization substance protein B [Vibrio cholerae 1587] gi|153803017|ref|ZP_01957603.1| N utilization substance protein B [Vibrio cholerae MZO-3] gi|153824256|ref|ZP_01976923.1| N utilization substance protein B [Vibrio cholerae B33] gi|153828248|ref|ZP_01980915.1| N utilization substance protein B [Vibrio cholerae 623-39] gi|227082391|ref|YP_002810942.1| N utilization substance protein B [Vibrio cholerae M66-2] gi|229507660|ref|ZP_04397165.1| transcription termination protein NusB [Vibrio cholerae BX 330286] gi|229512145|ref|ZP_04401624.1| transcription termination protein NusB [Vibrio cholerae B33] gi|229513908|ref|ZP_04403370.1| transcription termination protein NusB [Vibrio cholerae TMA 21] gi|229519280|ref|ZP_04408723.1| transcription termination protein NusB [Vibrio cholerae RC9] gi|229522212|ref|ZP_04411629.1| transcription termination protein NusB [Vibrio cholerae TM 11079-80] gi|229528732|ref|ZP_04418122.1| transcription termination protein NusB [Vibrio cholerae 12129(1)] gi|229607164|ref|YP_002877812.1| transcription antitermination protein NusB [Vibrio cholerae MJ-1236] gi|254286062|ref|ZP_04961023.1| N utilization substance protein B [Vibrio cholerae AM-19226] gi|254849396|ref|ZP_05238746.1| transcription antitermination protein NusB [Vibrio cholerae MO10] gi|255747039|ref|ZP_05420984.1| transcription termination protein NusB [Vibrio cholera CIRS 101] gi|262161417|ref|ZP_06030527.1| transcription termination protein NusB [Vibrio cholerae INDRE 91/1] gi|262168266|ref|ZP_06035963.1| transcription termination protein NusB [Vibrio cholerae RC27] gi|262190236|ref|ZP_06048510.1| transcription termination protein NusB [Vibrio cholerae CT 5369-93] gi|297580910|ref|ZP_06942835.1| transcription antitermination protein NusB [Vibrio cholerae RC385] gi|298500359|ref|ZP_07010164.1| transcription antitermination factor NusB [Vibrio cholerae MAK 757] gi|22095970|sp|Q9KPU5|NUSB_VIBCH RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|172047603|sp|A5F5Z6|NUSB_VIBC3 RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|254772665|sp|C3LQ39|NUSB_VIBCM RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|9656829|gb|AAF95411.1| N utilization substance protein B [Vibrio cholerae O1 biovar El Tor str. N16961] gi|121549587|gb|EAX59611.1| N utilization substance protein B [Vibrio cholerae 2740-80] gi|121628511|gb|EAX60997.1| N utilization substance protein B [Vibrio cholerae V52] gi|124113619|gb|EAY32439.1| N utilization substance protein B [Vibrio cholerae 1587] gi|124121460|gb|EAY40203.1| N utilization substance protein B [Vibrio cholerae MZO-3] gi|126518222|gb|EAZ75447.1| N utilization substance protein B [Vibrio cholerae B33] gi|146315111|gb|ABQ19650.1| N utilization substance protein B [Vibrio cholerae O395] gi|148876337|gb|EDL74472.1| N utilization substance protein B [Vibrio cholerae 623-39] gi|150423972|gb|EDN15912.1| N utilization substance protein B [Vibrio cholerae AM-19226] gi|227010279|gb|ACP06491.1| N utilization substance protein B [Vibrio cholerae M66-2] gi|227014163|gb|ACP10373.1| N utilization substance protein B [Vibrio cholerae O395] gi|229332506|gb|EEN97992.1| transcription termination protein NusB [Vibrio cholerae 12129(1)] gi|229341137|gb|EEO06142.1| transcription termination protein NusB [Vibrio cholerae TM 11079-80] gi|229343969|gb|EEO08944.1| transcription termination protein NusB [Vibrio cholerae RC9] gi|229349089|gb|EEO14046.1| transcription termination protein NusB [Vibrio cholerae TMA 21] gi|229352110|gb|EEO17051.1| transcription termination protein NusB [Vibrio cholerae B33] gi|229355165|gb|EEO20086.1| transcription termination protein NusB [Vibrio cholerae BX 330286] gi|229369819|gb|ACQ60242.1| transcription termination protein NusB [Vibrio cholerae MJ-1236] gi|254845101|gb|EET23515.1| transcription antitermination protein NusB [Vibrio cholerae MO10] gi|255735441|gb|EET90841.1| transcription termination protein NusB [Vibrio cholera CIRS 101] gi|262023158|gb|EEY41862.1| transcription termination protein NusB [Vibrio cholerae RC27] gi|262028728|gb|EEY47382.1| transcription termination protein NusB [Vibrio cholerae INDRE 91/1] gi|262033881|gb|EEY52347.1| transcription termination protein NusB [Vibrio cholerae CT 5369-93] gi|297534736|gb|EFH73572.1| transcription antitermination protein NusB [Vibrio cholerae RC385] gi|297541052|gb|EFH77106.1| transcription antitermination factor NusB [Vibrio cholerae MAK 757] gi|327484782|gb|AEA79189.1| Transcription termination protein NusB [Vibrio cholerae LMA3894-4] Length = 156 Score = 162 bits (410), Expect = 2e-38, Method: Composition-based stats. Identities = 42/155 (27%), Positives = 71/155 (45%), Gaps = 6/155 (3%) Query: 9 DLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHV---D 65 +K + RR AR A+QA+Y I + I ++ T + E L D Sbjct: 4 SVKPAARRN-ARQFALQAIYSWQITKENVATIEEQFLTSGKYDEEEHRAAEPALAAPETD 62 Query: 66 LEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEV 125 + +FR ++ GV+ +D + ++ LDM+ ++LR + E+ VP +V Sbjct: 63 VSYFRDLLAGVVLNHNELDSKLRPFVSR--PMQDLDMMELALLRLAMYEMTRREDVPYKV 120 Query: 126 IISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIK 160 +I+E + +A F D KF+N VLDK + K Sbjct: 121 VINEAIELAKVFAAEDSHKFVNGVLDKAAPHVRKK 155 >gi|32034438|ref|ZP_00134620.1| COG0781: Transcription termination factor [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|126207689|ref|YP_001052914.1| transcription antitermination protein NusB [Actinobacillus pleuropneumoniae L20] gi|165975657|ref|YP_001651250.1| transcription antitermination protein NusB [Actinobacillus pleuropneumoniae serovar 3 str. JL03] gi|190149473|ref|YP_001967998.1| transcription antitermination protein NusB [Actinobacillus pleuropneumoniae serovar 7 str. AP76] gi|307245014|ref|ZP_07527111.1| N utilization substance protein B [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|307247188|ref|ZP_07529239.1| N utilization substance protein B [Actinobacillus pleuropneumoniae serovar 2 str. S1536] gi|307249415|ref|ZP_07531406.1| N utilization substance protein B [Actinobacillus pleuropneumoniae serovar 4 str. M62] gi|307251733|ref|ZP_07533637.1| N utilization substance protein B [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|307253967|ref|ZP_07535819.1| N utilization substance protein B [Actinobacillus pleuropneumoniae serovar 9 str. CVJ13261] gi|307256228|ref|ZP_07538015.1| N utilization substance protein B [Actinobacillus pleuropneumoniae serovar 10 str. D13039] gi|307258422|ref|ZP_07540163.1| N utilization substance protein B [Actinobacillus pleuropneumoniae serovar 11 str. 56153] gi|307260660|ref|ZP_07542352.1| N utilization substance protein B [Actinobacillus pleuropneumoniae serovar 12 str. 1096] gi|307262792|ref|ZP_07544419.1| N utilization substance protein B [Actinobacillus pleuropneumoniae serovar 13 str. N273] gi|166215658|sp|A3MYS3|NUSB_ACTP2 RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|238687518|sp|B0BSK4|NUSB_ACTPJ RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|238692374|sp|B3H044|NUSB_ACTP7 RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|126096481|gb|ABN73309.1| transcription antitermination protein NusB [Actinobacillus pleuropneumoniae serovar 5b str. L20] gi|165875758|gb|ABY68806.1| transcription termination factor [Actinobacillus pleuropneumoniae serovar 3 str. JL03] gi|189914604|gb|ACE60856.1| transcription antitermination protein NusB [Actinobacillus pleuropneumoniae serovar 7 str. AP76] gi|306854179|gb|EFM86387.1| N utilization substance protein B [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|306856326|gb|EFM88478.1| N utilization substance protein B [Actinobacillus pleuropneumoniae serovar 2 str. S1536] gi|306858557|gb|EFM90622.1| N utilization substance protein B [Actinobacillus pleuropneumoniae serovar 4 str. M62] gi|306860819|gb|EFM92828.1| N utilization substance protein B [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|306863171|gb|EFM95113.1| N utilization substance protein B [Actinobacillus pleuropneumoniae serovar 9 str. CVJ13261] gi|306865409|gb|EFM97305.1| N utilization substance protein B [Actinobacillus pleuropneumoniae serovar 10 str. D13039] gi|306867606|gb|EFM99453.1| N utilization substance protein B [Actinobacillus pleuropneumoniae serovar 11 str. 56153] gi|306869737|gb|EFN01522.1| N utilization substance protein B [Actinobacillus pleuropneumoniae serovar 12 str. 1096] gi|306871937|gb|EFN03654.1| N utilization substance protein B [Actinobacillus pleuropneumoniae serovar 13 str. N273] Length = 137 Score = 161 bits (409), Expect = 2e-38, Method: Composition-based stats. Identities = 45/145 (31%), Positives = 68/145 (46%), Gaps = 14/145 (9%) Query: 10 LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF 69 +K+S RR AR AVQALY + S E+ + T + VDL +F Sbjct: 1 MKVSPRRR-ARECAVQALYSWYVSQNSVEEVELSFVT-----------DQDMNGVDLPYF 48 Query: 70 RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISE 129 R ++ G + + ID + L +D I +ILR EL VP +V+I+E Sbjct: 49 RKLLRGTVLYVEAIDNDLRPFLDRAE--DEVDPIERTILRLSAYELKYELDVPYKVVINE 106 Query: 130 YVCIAHDFFYGDEPKFINAVLDKVS 154 + +A F D K+IN +LDK++ Sbjct: 107 GIEVAKVFGSDDSHKYINGILDKLA 131 >gi|258620990|ref|ZP_05716024.1| N utilization substance protein B [Vibrio mimicus VM573] gi|261211383|ref|ZP_05925671.1| transcription termination protein NusB [Vibrio sp. RC341] gi|262170766|ref|ZP_06038444.1| transcription termination protein NusB [Vibrio mimicus MB-451] gi|262404600|ref|ZP_06081155.1| transcription termination protein NusB [Vibrio sp. RC586] gi|258586378|gb|EEW11093.1| N utilization substance protein B [Vibrio mimicus VM573] gi|260839338|gb|EEX65964.1| transcription termination protein NusB [Vibrio sp. RC341] gi|261891842|gb|EEY37828.1| transcription termination protein NusB [Vibrio mimicus MB-451] gi|262349632|gb|EEY98770.1| transcription termination protein NusB [Vibrio sp. RC586] Length = 156 Score = 161 bits (409), Expect = 2e-38, Method: Composition-based stats. Identities = 42/155 (27%), Positives = 71/155 (45%), Gaps = 6/155 (3%) Query: 9 DLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHV---D 65 +K + RR AR A+QA+Y I + I ++ T + E L D Sbjct: 4 SVKPAARRN-ARQFALQAIYSWQITKENVATIEEQFLTSGKYDEEEHRAAEPALAAPETD 62 Query: 66 LEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEV 125 + +FR ++ GV+ +D + ++ LDM+ ++LR + E+ VP +V Sbjct: 63 VSYFRDLLAGVVLNHTELDSKLRPFVSR--PMQDLDMMELALLRLAMYEMTRREDVPYKV 120 Query: 126 IISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIK 160 +I+E + +A F D KF+N VLDK + K Sbjct: 121 VINEAIELAKVFAAEDSHKFVNGVLDKAAPHVRKK 155 >gi|149181858|ref|ZP_01860347.1| transcription antitermination protein NusB [Bacillus sp. SG-1] gi|148850397|gb|EDL64558.1| transcription antitermination protein NusB [Bacillus sp. SG-1] Length = 133 Score = 161 bits (409), Expect = 2e-38, Method: Composition-based stats. Identities = 51/139 (36%), Positives = 73/139 (52%), Gaps = 16/139 (11%) Query: 15 RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74 +R AR A+QAL+Q+D+ G + E ++ DT D E+ +++ Sbjct: 2 KRRTAREKALQALFQMDMSGMTADEALT-----NVYEDTPSD----------EYLENLVN 46 Query: 75 GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134 G + K+ ID LI L EKWSF RL + +ILR V EL+E VP +V+I+E + IA Sbjct: 47 GATENKEKIDGLIKENL-EKWSFDRLAKVDRNILRVAVYELLEADDVPSKVVINEAIEIA 105 Query: 135 HDFFYGDEPKFINAVLDKV 153 + KFIN VL KV Sbjct: 106 KTYGDDQSGKFINGVLSKV 124 >gi|86137878|ref|ZP_01056454.1| transcription antitermination factor NusB [Roseobacter sp. MED193] gi|85825470|gb|EAQ45669.1| transcription antitermination factor NusB [Roseobacter sp. MED193] Length = 160 Score = 161 bits (409), Expect = 2e-38, Method: Composition-based stats. Identities = 53/160 (33%), Positives = 87/160 (54%), Gaps = 6/160 (3%) Query: 1 MTIQDN-KKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVES 59 MT D+ K + + ARL AVQAL+Q++ + ++I+E+E +RF A E + Sbjct: 1 MTHSDSAPKGNGKTQMKSAARLYAVQALFQMEHSDLTFDKVIAEFENHRFGAVYE---DG 57 Query: 60 VYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECH 119 D FR ++ ++ + ID + L KW +R+D L ++ RA E + Sbjct: 58 EMAEGDTGLFRKLLKDAVNFQAPIDQMTDRALVAKWPIARIDPTLRALFRAAGAEFTQS- 116 Query: 120 SVPVEVIISEYVCIAHDFF-YGDEPKFINAVLDKVSRKEE 158 + P +V+I+E+V IA FF G E KF+NAVLD ++R+ + Sbjct: 117 NTPPKVVINEFVDIARAFFPEGKEAKFVNAVLDHMAREAK 156 >gi|88801237|ref|ZP_01116776.1| transcription antitermination protein NusB [Reinekea sp. MED297] gi|88776023|gb|EAR07259.1| transcription antitermination protein NusB [Reinekea sp. MED297] Length = 151 Score = 161 bits (409), Expect = 2e-38, Method: Composition-based stats. Identities = 41/153 (26%), Positives = 69/153 (45%), Gaps = 13/153 (8%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 R AR A+QALYQ + S T+I +E+ T ++ D ++F ++ G Sbjct: 11 RRKARRLAMQALYQWHVADQSVTQIEAEFLT-----------DNDVSKFDKDYFSEVLRG 59 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135 V K +D + + + L + +ILR G E + VP +VII+E V ++ Sbjct: 60 VAASKSELDSHVDKHIDR--ALKDLTPVELAILRMGAYEFLHRIDVPYKVIINEGVELSK 117 Query: 136 DFFYGDEPKFINAVLDKVSRKEEIKRSGCVSAI 168 F + +F+N VLDK+++ A Sbjct: 118 TFGANEAHRFVNGVLDKLAQDLRSPEVQAGKAT 150 >gi|159044792|ref|YP_001533586.1| N utilization substance protein B-like protein [Dinoroseobacter shibae DFL 12] gi|157912552|gb|ABV93985.1| N utilization substance protein B-like protein [Dinoroseobacter shibae DFL 12] Length = 159 Score = 161 bits (409), Expect = 2e-38, Method: Composition-based stats. Identities = 57/159 (35%), Positives = 84/159 (52%), Gaps = 6/159 (3%) Query: 1 MTIQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESV 60 M+ Q +K K + ARL AVQAL+Q++ G S +I E+E +RF A E E Sbjct: 1 MSKQSDKLAAKRQAK-SAARLYAVQALFQMEAAGQSADSVIREFEDHRFGAIYE---EGE 56 Query: 61 YLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHS 120 + FR + ++ + ID L L W R+D L ++ RA EL+ Sbjct: 57 MAEGHVTLFRTTVGEAVNWQAKIDQLTDRALATAWPIDRIDPTLRALFRAAGAELV-RAD 115 Query: 121 VPVEVIISEYVCIAHDFF-YGDEPKFINAVLDKVSRKEE 158 P +V+I+EYV +A FF G EPKF+NAVLD ++R+ + Sbjct: 116 TPPKVVINEYVDLARAFFPDGKEPKFVNAVLDHMAREAK 154 >gi|83949450|ref|ZP_00958183.1| putative N utilization substance protein B [Roseovarius nubinhibens ISM] gi|83837349|gb|EAP76645.1| putative N utilization substance protein B [Roseovarius nubinhibens ISM] Length = 160 Score = 161 bits (409), Expect = 2e-38, Method: Composition-based stats. Identities = 58/161 (36%), Positives = 82/161 (50%), Gaps = 4/161 (2%) Query: 1 MTIQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESV 60 M+ + N + R ARL AVQAL+Q++ S E+ E+ +RF A E D Sbjct: 1 MSDRPNISGNQQRKMRSAARLYAVQALFQMEHSSLSVDEVRREFLEFRFGA--EFDDGID 58 Query: 61 YLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHS 120 D E F +I G + + ID + L KW R+D L ++ RA EL+ Sbjct: 59 MQEGDAEHFADVIEGAVQWQAKIDQMTDRALVAKWPIDRIDPTLRALFRAAGAELM-QEG 117 Query: 121 VPVEVIISEYVCIAHDFF-YGDEPKFINAVLDKVSRKEEIK 160 P +V+I EYV IA FF G EPKF+NAVLD ++R+ + Sbjct: 118 TPPKVVIVEYVDIAKSFFPEGREPKFVNAVLDFMAREARPE 158 >gi|163738657|ref|ZP_02146071.1| NusB antitermination factor [Phaeobacter gallaeciensis BS107] gi|163742958|ref|ZP_02150341.1| putative N utilization substance protein B [Phaeobacter gallaeciensis 2.10] gi|161383641|gb|EDQ08027.1| putative N utilization substance protein B [Phaeobacter gallaeciensis 2.10] gi|161387985|gb|EDQ12340.1| NusB antitermination factor [Phaeobacter gallaeciensis BS107] Length = 163 Score = 161 bits (409), Expect = 2e-38, Method: Composition-based stats. Identities = 55/161 (34%), Positives = 87/161 (54%), Gaps = 9/161 (5%) Query: 1 MTIQDN----KKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELD 56 MT D+ +K + +RL AVQAL+Q++ + ++I E+E +RF A + D Sbjct: 1 MTTSDSQGAARKGSDKHKMKSASRLYAVQALFQMEHSNLTFDKVIVEFEDHRFGAVYDGD 60 Query: 57 VESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELI 116 D + FR +I G ++ + ID + L KW +R+D L ++ RA E + Sbjct: 61 E---MAEGDTKSFRKLIEGAVNEQAKIDQMTDRALVAKWPIARIDPTLRALFRAAGAEFL 117 Query: 117 ECHSVPVEVIISEYVCIAHDFF-YGDEPKFINAVLDKVSRK 156 P +V+I+E+V IA FF G EPKF+NAVLD ++R+ Sbjct: 118 AGK-TPPKVVINEFVDIARAFFPEGKEPKFVNAVLDHMARE 157 >gi|113460974|ref|YP_719041.1| transcription antitermination protein NusB [Haemophilus somnus 129PT] gi|119390774|sp|Q0I3N5|NUSB_HAES1 RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|112823017|gb|ABI25106.1| N utilization substance protein B [Haemophilus somnus 129PT] Length = 144 Score = 161 bits (409), Expect = 2e-38, Method: Composition-based stats. Identities = 49/155 (31%), Positives = 74/155 (47%), Gaps = 12/155 (7%) Query: 6 NKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVD 65 +K KLS RR AR AVQ LY I + EI + +D ++ VD Sbjct: 2 TEKVKKLSPRRR-ARECAVQTLYSWAISKNAPEEIELNFI---------VDQDNEMKGVD 51 Query: 66 LEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEV 125 + +FR + +D + +D +++ L LD I C+ILR V EL VP +V Sbjct: 52 MPYFRKLFRQTVDHVEIVDSIMAPYLDRDNV--ELDPIECAILRLAVYELKFELDVPYKV 109 Query: 126 IISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIK 160 +I+E + +A F + K+IN VLDK++ K Sbjct: 110 VINEAIEVAKVFGAEESHKYINGVLDKIAPALSRK 144 >gi|229524269|ref|ZP_04413674.1| transcription termination protein NusB [Vibrio cholerae bv. albensis VL426] gi|229337850|gb|EEO02867.1| transcription termination protein NusB [Vibrio cholerae bv. albensis VL426] Length = 156 Score = 161 bits (409), Expect = 3e-38, Method: Composition-based stats. Identities = 42/155 (27%), Positives = 71/155 (45%), Gaps = 6/155 (3%) Query: 9 DLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHV---D 65 +K + RR AR A+QA+Y I + I ++ T + E L D Sbjct: 4 SVKPAARRN-ARQFALQAIYSWQITKENVATIEEQFLTSGKYDEEEHRAAEPALAAPETD 62 Query: 66 LEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEV 125 + +FR ++ GV+ +D + ++ LDM+ ++LR + E+ VP +V Sbjct: 63 VAYFRDLLAGVVLNHNELDSKLRPFVSR--PMQDLDMMELALLRLAMYEMTRREDVPYKV 120 Query: 126 IISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIK 160 +I+E + +A F D KF+N VLDK + K Sbjct: 121 VINEAIELAKVFAAEDSHKFVNGVLDKAAPHVRKK 155 >gi|261867676|ref|YP_003255598.1| transcription antitermination protein NusB [Aggregatibacter actinomycetemcomitans D11S-1] gi|261413008|gb|ACX82379.1| transcription antitermination factor NusB [Aggregatibacter actinomycetemcomitans D11S-1] Length = 141 Score = 161 bits (409), Expect = 3e-38, Method: Composition-based stats. Identities = 45/144 (31%), Positives = 67/144 (46%), Gaps = 14/144 (9%) Query: 11 KLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFR 70 K+S RR AR AVQALY I S + + T E VD +FR Sbjct: 7 KISPRRR-ARECAVQALYSWAISKNSPEIVELNFIT-----------EQDMKGVDTPYFR 54 Query: 71 VIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEY 130 + ++ + +D + L + LD I +ILR V EL +VP +V+I+E Sbjct: 55 KLFRQTVENVEAVDATMQCYLDR--TLEELDPIEKAILRLAVYELQFEANVPYKVVINEA 112 Query: 131 VCIAHDFFYGDEPKFINAVLDKVS 154 + +A F + K+IN VLDK++ Sbjct: 113 IEVAKVFGADESHKYINGVLDKIA 136 >gi|56696640|ref|YP_167001.1| transcription antitermination factor NusB [Ruegeria pomeroyi DSS-3] gi|56678377|gb|AAV95043.1| transcription antitermination factor NusB [Ruegeria pomeroyi DSS-3] Length = 160 Score = 161 bits (409), Expect = 3e-38, Method: Composition-based stats. Identities = 52/160 (32%), Positives = 83/160 (51%), Gaps = 6/160 (3%) Query: 1 MTIQDNKKDLKLSHR-RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVES 59 M+ D K + + + ARL AVQAL+Q++ G + ++SE+ +RF A E D Sbjct: 1 MSQSDTPKPVNRKRQMKSAARLYAVQALFQMEHSGQTVESVVSEFLEHRFGAVYEGDE-- 58 Query: 60 VYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECH 119 D FR ++ ++ + ID + L KW +R+D L ++ RA E + Sbjct: 59 -LAEGDAALFRALVGDAVNNQALIDQMTDRALVAKWPIARIDPTLRALFRAAGAEFSQN- 116 Query: 120 SVPVEVIISEYVCIAHDFF-YGDEPKFINAVLDKVSRKEE 158 P +V+I+E+V IA FF G E F+NAVLD ++R+ Sbjct: 117 DTPPKVVITEFVDIARAFFPEGRETSFVNAVLDHMAREAR 156 >gi|308185886|ref|YP_003930017.1| N utilization substance protein B [Pantoea vagans C9-1] gi|308056396|gb|ADO08568.1| N utilization substance protein B [Pantoea vagans C9-1] Length = 139 Score = 161 bits (408), Expect = 3e-38, Method: Composition-based stats. Identities = 38/142 (26%), Positives = 62/142 (43%), Gaps = 13/142 (9%) Query: 21 LAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRK 80 AVQALY + ++ ++ E VD+ +FR ++ GV Sbjct: 11 ECAVQALYSWQLSNNDIADVEYQFLA-----------EQDVKDVDITYFRELLSGVATNS 59 Query: 81 QHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYG 140 ++D L+ L+ + L + +ILR + EL + VP +V I+E + +A F Sbjct: 60 AYLDGLMKPYLSRQ--LEELGQVEKAILRISLYELSKRDDVPYKVAINEGIELAKVFGAE 117 Query: 141 DEPKFINAVLDKVSRKEEIKRS 162 D KF+N VLDK + R Sbjct: 118 DSHKFVNGVLDKAGPQIRPNRK 139 >gi|254282810|ref|ZP_04957778.1| transcription antitermination factor NusB [gamma proteobacterium NOR51-B] gi|219679013|gb|EED35362.1| transcription antitermination factor NusB [gamma proteobacterium NOR51-B] Length = 149 Score = 161 bits (408), Expect = 3e-38, Method: Composition-based stats. Identities = 47/145 (32%), Positives = 75/145 (51%), Gaps = 13/145 (8%) Query: 12 LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71 L+ RR AR A+QALYQ + TEI +E+ V++ + HVD E+F Sbjct: 8 LAARRRKARHYALQALYQWTMNRNDLTEIEAEFR-----------VDNDFSHVDGEYFHE 56 Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131 ++ G++ +D + L S S LD + ++LR G EL + VP +V I+E V Sbjct: 57 LLTGIVRTADSLDESLVPLLDR--SISELDPVERNLLRLGAFELRDRIDVPYKVAINEAV 114 Query: 132 CIAHDFFYGDEPKFINAVLDKVSRK 156 +A F D +++N VLDK+++ Sbjct: 115 ALAKKFGATDSFRYVNGVLDKLAQD 139 >gi|212709167|ref|ZP_03317295.1| hypothetical protein PROVALCAL_00200 [Providencia alcalifaciens DSM 30120] gi|212688079|gb|EEB47607.1| hypothetical protein PROVALCAL_00200 [Providencia alcalifaciens DSM 30120] Length = 138 Score = 161 bits (408), Expect = 3e-38, Method: Composition-based stats. Identities = 41/141 (29%), Positives = 64/141 (45%), Gaps = 13/141 (9%) Query: 21 LAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRK 80 AVQA+Y + G E+ E+ E VD+ +FR +I G+ + Sbjct: 11 ECAVQAIYSWQLSGNPIAEVEYEFIA-----------EQDMSDVDVNYFRELISGIANNA 59 Query: 81 QHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYG 140 +D L+S L+ + L + +ILR + EL VP +V I+E + +A F Sbjct: 60 TKLDQLMSPYLSRQ--LEELGQVEKAILRVAMYELSYRQDVPFKVAINEGIELAKVFGAE 117 Query: 141 DEPKFINAVLDKVSRKEEIKR 161 D KF+N VLDK + K+ Sbjct: 118 DSHKFVNGVLDKAAPVVRRKK 138 >gi|92114700|ref|YP_574628.1| NusB antitermination factor [Chromohalobacter salexigens DSM 3043] gi|119390757|sp|Q1QUC9|NUSB_CHRSD RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|91797790|gb|ABE59929.1| NusB antitermination factor [Chromohalobacter salexigens DSM 3043] Length = 166 Score = 161 bits (408), Expect = 3e-38, Method: Composition-based stats. Identities = 51/157 (32%), Positives = 71/157 (45%), Gaps = 7/157 (4%) Query: 14 HRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVE--SVYLHVDLEWFRV 71 R AR AVQ LYQ + G S T + SE+ D E V DL F Sbjct: 13 QSRRAARELAVQGLYQWQMTGKSITAVESEFRAQIADEDLEDHENWHKVMGIADLALFHE 72 Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131 ++H V ++ ID I+ L LD I +ILR G EL VP +I+E + Sbjct: 73 LLHNVAADREAIDKTIAPLLDR--RLEDLDRIELAILRLGAYELKYRLEVPYRAVINEGI 130 Query: 132 CIAHDFFYGDEPKFINAVLDKVSRKEEIKRSGCVSAI 168 +A F D K++N +LDK++ + RS V+A Sbjct: 131 ELAKAFGATDGHKYVNGILDKLASRL---RSAEVAAR 164 >gi|297155776|gb|ADI05488.1| transcription antitermination protein NusB [Streptomyces bingchenggensis BCW-1] Length = 150 Score = 161 bits (408), Expect = 4e-38, Method: Composition-based stats. Identities = 41/155 (26%), Positives = 68/155 (43%), Gaps = 9/155 (5%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 R AR A Q L++ D G S +++++ + D + V E+ ++ G Sbjct: 4 RNKARKRAFQILFEADQRGTSVQTVLADWIRHARTDDRQPPVS--------EYTMQLVEG 55 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135 ID LIS+ W+ R+ ++ +ILR G EL+ P V+I E V +A Sbjct: 56 YAQYTARIDELISTYAV-GWTLDRMPVVDRNILRLGAYELVWEDETPDAVVIDEAVQLAK 114 Query: 136 DFFYGDEPKFINAVLDKVSRKEEIKRSGCVSAITQ 170 +F D P F+N +L + + R G T+ Sbjct: 115 EFSTDDSPAFVNGLLGRFKELKPSLRRGEQQPTTE 149 >gi|238760660|ref|ZP_04621785.1| N utilization substance protein B [Yersinia aldovae ATCC 35236] gi|238701125|gb|EEP93717.1| N utilization substance protein B [Yersinia aldovae ATCC 35236] Length = 138 Score = 161 bits (407), Expect = 4e-38, Method: Composition-based stats. Identities = 38/141 (26%), Positives = 64/141 (45%), Gaps = 13/141 (9%) Query: 21 LAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRK 80 AVQALY + ++ ++ + E VD+ +FR ++ GV Sbjct: 11 ECAVQALYSWQLSKNDIADVELQFLS-----------EQDVKDVDIAYFRELLSGVAVHA 59 Query: 81 QHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYG 140 +D L+ L+ + L + ++LR + EL + VP +V I+E + +A F Sbjct: 60 ASLDALMEPFLSRQ--LEELGQVERAVLRIALFELSKRQDVPYKVAINEAIELAKTFGAE 117 Query: 141 DEPKFINAVLDKVSRKEEIKR 161 D KF+N VLDKV+ K+ Sbjct: 118 DSHKFVNGVLDKVAPTVRKKK 138 >gi|331006273|ref|ZP_08329591.1| Transcription termination protein NusB [gamma proteobacterium IMCC1989] gi|330419920|gb|EGG94268.1| Transcription termination protein NusB [gamma proteobacterium IMCC1989] Length = 152 Score = 161 bits (407), Expect = 4e-38, Method: Composition-based stats. Identities = 51/159 (32%), Positives = 75/159 (47%), Gaps = 16/159 (10%) Query: 6 NKKDLKLS-HRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHV 64 K K+S R AR +QALYQ + G + EI +E+ V++ H Sbjct: 2 KKPPAKVSPATRRKARHFGMQALYQWSMTGAALNEIEAEFH-----------VDNDMTHT 50 Query: 65 DLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVE 124 D ++F ++H + R +D L + S LD + S+LR EL VP + Sbjct: 51 DTDYFHELVHEIPARVTELDEAYFPHL-QDRSVEELDPVTLSLLRLATYELAHRIDVPYK 109 Query: 125 VIISEYVCIAHDFFYGDEPKFINAVLDKVS---RKEEIK 160 V+I+E V +A F D KFIN VLDK++ R E+K Sbjct: 110 VVINEAVSLAKKFGATDSFKFINGVLDKLAVSLRAVEVK 148 >gi|307129902|ref|YP_003881918.1| transcription antitermination protein [Dickeya dadantii 3937] gi|306527431|gb|ADM97361.1| transcription antitermination protein [Dickeya dadantii 3937] Length = 139 Score = 161 bits (407), Expect = 4e-38, Method: Composition-based stats. Identities = 37/132 (28%), Positives = 62/132 (46%), Gaps = 13/132 (9%) Query: 21 LAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRK 80 AVQALY + ++ ++ + E VD+ +FR ++ GV + Sbjct: 11 ECAVQALYSWQLSKNDIADVELQFLS-----------EQDVKGVDITYFRELLAGVATQA 59 Query: 81 QHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYG 140 + +D ++ L+ + L + +ILR V EL + VP +V I+E + +A F Sbjct: 60 EKLDAQMAPYLSRQ--LDELGQVERAILRLAVYELSKREDVPYKVAINEAIELAKVFGAE 117 Query: 141 DEPKFINAVLDK 152 D KF+N VLDK Sbjct: 118 DSHKFVNGVLDK 129 >gi|317047151|ref|YP_004114799.1| NusB antitermination factor [Pantoea sp. At-9b] gi|316948768|gb|ADU68243.1| NusB antitermination factor [Pantoea sp. At-9b] Length = 139 Score = 161 bits (407), Expect = 4e-38, Method: Composition-based stats. Identities = 38/142 (26%), Positives = 63/142 (44%), Gaps = 13/142 (9%) Query: 21 LAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRK 80 AVQALY + ++ ++ E VD+ +FR ++ GV Sbjct: 11 ECAVQALYSWQLSNNDIADVEYQFLA-----------EQDVKDVDISYFRELLSGVATNS 59 Query: 81 QHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYG 140 ++D L+ L+ + L + +ILR + EL + VP +V I+E + +A F Sbjct: 60 AYLDGLMKPYLSRQ--LEELGQVEKAILRISLFELSKRSDVPYKVAINEGIELAKVFGAE 117 Query: 141 DEPKFINAVLDKVSRKEEIKRS 162 D KF+N VLDK + + R Sbjct: 118 DSHKFVNGVLDKAAPQIRPNRK 139 >gi|293392266|ref|ZP_06636600.1| transcription antitermination factor NusB [Aggregatibacter actinomycetemcomitans D7S-1] gi|290952800|gb|EFE02919.1| transcription antitermination factor NusB [Aggregatibacter actinomycetemcomitans D7S-1] Length = 141 Score = 161 bits (407), Expect = 5e-38, Method: Composition-based stats. Identities = 45/144 (31%), Positives = 67/144 (46%), Gaps = 14/144 (9%) Query: 11 KLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFR 70 K+S RR AR AVQALY I S + + T E VD +FR Sbjct: 7 KISPRRR-ARECAVQALYSWAISKNSPEIVELNFIT-----------EQDMKGVDTPYFR 54 Query: 71 VIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEY 130 + ++ + +D + L + LD I +ILR V EL +VP +V+I+E Sbjct: 55 KLFRQTVENVEAVDATMQYYLDR--TLEELDPIEKAILRLAVYELQFEANVPYKVVINEA 112 Query: 131 VCIAHDFFYGDEPKFINAVLDKVS 154 + +A F + K+IN VLDK++ Sbjct: 113 IEVAKVFGADESHKYINGVLDKIA 136 >gi|85704976|ref|ZP_01036076.1| transcription antitermination factor NusB [Roseovarius sp. 217] gi|85670298|gb|EAQ25159.1| transcription antitermination factor NusB [Roseovarius sp. 217] Length = 160 Score = 161 bits (407), Expect = 5e-38, Method: Composition-based stats. Identities = 52/161 (32%), Positives = 85/161 (52%), Gaps = 4/161 (2%) Query: 1 MTIQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESV 60 MT + + ARL AVQAL+Q++ G ++ + E+ +RF A E+D Sbjct: 1 MTTDPALSGNRKRQMKSAARLYAVQALFQMEHSGQTSDVVREEFLDFRFGA--EVDEGVD 58 Query: 61 YLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHS 120 D++ FR ++ ++ + ID + L KW +R+D L ++ RA EL+E Sbjct: 59 MAEGDVDLFRKLLDDAVNWQAKIDQMTDRALVAKWPIARIDPTLRALFRAAGAELVES-D 117 Query: 121 VPVEVIISEYVCIAHDFF-YGDEPKFINAVLDKVSRKEEIK 160 P +V+I EYV +A F+ G E KF+NAVLD ++R+ + Sbjct: 118 TPPKVVIMEYVDVAKAFYPAGKESKFVNAVLDHMAREARPE 158 >gi|114767590|ref|ZP_01446325.1| transcription antitermination factor NusB [Pelagibaca bermudensis HTCC2601] gi|114540368|gb|EAU43457.1| transcription antitermination factor NusB [Roseovarius sp. HTCC2601] Length = 163 Score = 160 bits (406), Expect = 5e-38, Method: Composition-based stats. Identities = 56/164 (34%), Positives = 88/164 (53%), Gaps = 7/164 (4%) Query: 1 MTIQDNKKDLKLSHRRG---IARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDV 57 MT D L + +R +RL AVQALYQ++ + ++ E+ YRF A+ + V Sbjct: 1 MTTPDTPPALSGNQKRRMKSASRLYAVQALYQMEAGDVAVEKVQREFVDYRFGAEIDEGV 60 Query: 58 ESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIE 117 E + D+ F I ++ + ID + L KW +R+D L ++ RA EL++ Sbjct: 61 E--MVEGDVTLFGKITSSAVNWQAKIDQMTDRALVAKWPIARIDPTLRALFRAAGAELVD 118 Query: 118 CHSVPVEVIISEYVCIAHDFF-YGDEPKFINAVLDKVSRKEEIK 160 P +V+ISEYV +A FF G EP+F+NAVLD ++R+ + Sbjct: 119 S-DTPPKVVISEYVEVASAFFPEGREPRFVNAVLDHMAREARPE 161 >gi|327392955|dbj|BAK10377.1| N utilization substance protein B NusB [Pantoea ananatis AJ13355] Length = 139 Score = 160 bits (406), Expect = 5e-38, Method: Composition-based stats. Identities = 38/142 (26%), Positives = 63/142 (44%), Gaps = 13/142 (9%) Query: 21 LAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRK 80 AVQALY + ++ ++ E VD+ +FR ++ GV Sbjct: 11 ECAVQALYSWQLSNNDIADVEYQFLA-----------EQDVKDVDITYFRELLSGVATNS 59 Query: 81 QHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYG 140 ++D L+ L+ + L + +ILR + EL + VP +V I+E + +A F Sbjct: 60 AYLDGLMKPYLSRQ--LEELGQVEKAILRISLYELSKRSDVPYKVAINEGIELAKVFGAE 117 Query: 141 DEPKFINAVLDKVSRKEEIKRS 162 D KF+N VLDK + +R Sbjct: 118 DSHKFVNGVLDKAGPQIRPQRK 139 >gi|84394359|ref|ZP_00993080.1| transcription antitermination protein NusB [Vibrio splendidus 12B01] gi|86147433|ref|ZP_01065745.1| transcription antitermination protein NusB [Vibrio sp. MED222] gi|148976613|ref|ZP_01813300.1| transcription antitermination protein NusB [Vibrionales bacterium SWAT-3] gi|218710372|ref|YP_002417993.1| transcription antitermination protein NusB [Vibrio splendidus LGP32] gi|254772666|sp|B7VJA4|NUSB_VIBSL RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|84375018|gb|EAP91944.1| transcription antitermination protein NusB [Vibrio splendidus 12B01] gi|85834726|gb|EAQ52872.1| transcription antitermination protein NusB [Vibrio sp. MED222] gi|145963964|gb|EDK29222.1| transcription antitermination protein NusB [Vibrionales bacterium SWAT-3] gi|218323391|emb|CAV19568.1| N utilization substance protein B homolog [Vibrio splendidus LGP32] Length = 155 Score = 160 bits (406), Expect = 5e-38, Method: Composition-based stats. Identities = 38/155 (24%), Positives = 70/155 (45%), Gaps = 6/155 (3%) Query: 9 DLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTE---LDVESVYLHVD 65 +K + RR AR A+QA+Y I + + ++ + + E + D Sbjct: 4 SVKPAARRN-ARQFALQAIYSWQITKENIATVEEQFLSGGKYDEEEHHAAEPALAMPETD 62 Query: 66 LEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEV 125 + +FR ++ GV +D + ++ LD++ ++LR + E+ VP +V Sbjct: 63 VAYFRDLLTGVALSHMELDSKLRPFVSR--PMQDLDLMELALLRLAMYEMTRREDVPYKV 120 Query: 126 IISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIK 160 +I+E + +A F D KF+N VLDK + K Sbjct: 121 VINEAIELAKVFAAEDSHKFVNGVLDKAAPHVRKK 155 >gi|251790668|ref|YP_003005389.1| transcription antitermination protein NusB [Dickeya zeae Ech1591] gi|247539289|gb|ACT07910.1| NusB antitermination factor [Dickeya zeae Ech1591] Length = 139 Score = 160 bits (406), Expect = 5e-38, Method: Composition-based stats. Identities = 37/132 (28%), Positives = 62/132 (46%), Gaps = 13/132 (9%) Query: 21 LAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRK 80 AVQALY + ++ ++ + E VD+ +FR ++ GV + Sbjct: 11 ECAVQALYSWQLSKNDIADVELQFLS-----------EQDVKGVDIAYFRELLAGVATQA 59 Query: 81 QHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYG 140 + +D ++ L+ + L + +ILR V EL + VP +V I+E + +A F Sbjct: 60 EKLDAQMAPYLSRQ--LEELGQVERAILRLAVYELSKREDVPYKVAINEAIELAKVFGAE 117 Query: 141 DEPKFINAVLDK 152 D KF+N VLDK Sbjct: 118 DSHKFVNGVLDK 129 >gi|188534655|ref|YP_001908452.1| transcription antitermination protein NusB [Erwinia tasmaniensis Et1/99] gi|238691979|sp|B2VHS8|NUSB_ERWT9 RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|188029697|emb|CAO97576.1| N utilization substance protein B [Erwinia tasmaniensis Et1/99] Length = 139 Score = 160 bits (406), Expect = 5e-38, Method: Composition-based stats. Identities = 39/142 (27%), Positives = 63/142 (44%), Gaps = 13/142 (9%) Query: 21 LAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRK 80 AVQALY I ++ ++ E VD+ +FR ++ GV Sbjct: 11 ECAVQALYSWQISKNDIADVEYQFLA-----------EQDVKDVDITYFRELVGGVATNS 59 Query: 81 QHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYG 140 ++D L+ L+ + L + +ILR + EL + VP +V I+E + +A F Sbjct: 60 AYLDGLMKPYLSRQ--LEELGQVEKAILRISLFELSKRSDVPYKVAINEGIELAKVFGAE 117 Query: 141 DEPKFINAVLDKVSRKEEIKRS 162 D KF+N VLDK + + R Sbjct: 118 DSHKFVNGVLDKAAPQIRPNRK 139 >gi|253576317|ref|ZP_04853647.1| transcription antitermination factor NusB [Paenibacillus sp. oral taxon 786 str. D14] gi|251844210|gb|EES72228.1| transcription antitermination factor NusB [Paenibacillus sp. oral taxon 786 str. D14] Length = 149 Score = 160 bits (406), Expect = 5e-38, Method: Composition-based stats. Identities = 40/144 (27%), Positives = 71/144 (49%), Gaps = 2/144 (1%) Query: 15 RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74 +R +AR AVQ++YQ+++ E ++ T + E +VE + + +++ Sbjct: 2 KRRLAREIAVQSMYQMEMNEVDANEAVTMLLTEA-MEENEGEVELSDVDATRAFALELVN 60 Query: 75 GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134 G RK ID L+ L + W SRL + +LR E+I VP +V ++E + +A Sbjct: 61 GTWSRKDAIDSLLEDYL-KGWQISRLSKVDRQVLRLATYEMIFRDDVPGKVAVNEAIELA 119 Query: 135 HDFFYGDEPKFINAVLDKVSRKEE 158 F + KF+N VL K+ + + Sbjct: 120 KHFGSPESGKFVNGVLGKMIQDID 143 >gi|291616524|ref|YP_003519266.1| NusB [Pantoea ananatis LMG 20103] gi|291151554|gb|ADD76138.1| NusB [Pantoea ananatis LMG 20103] Length = 139 Score = 160 bits (406), Expect = 6e-38, Method: Composition-based stats. Identities = 38/142 (26%), Positives = 63/142 (44%), Gaps = 13/142 (9%) Query: 21 LAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRK 80 AVQALY + ++ ++ E VD+ +FR ++ GV Sbjct: 11 ECAVQALYSWQLSNNDIADVEYQFLA-----------EQDVKDVDITYFRELLSGVATNS 59 Query: 81 QHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYG 140 ++D L+ L+ + L + +ILR + EL + VP +V I+E + +A F Sbjct: 60 AYLDGLMKPYLSRQ--LEELGQVEKAILRVSLYELSKRSDVPYKVAINEGIELAKVFGAE 117 Query: 141 DEPKFINAVLDKVSRKEEIKRS 162 D KF+N VLDK + +R Sbjct: 118 DSHKFVNGVLDKAGPQIRPQRK 139 >gi|83858229|ref|ZP_00951751.1| transcription antitermination protein NusB [Oceanicaulis alexandrii HTCC2633] gi|83853052|gb|EAP90904.1| transcription antitermination protein NusB [Oceanicaulis alexandrii HTCC2633] Length = 158 Score = 160 bits (406), Expect = 6e-38, Method: Composition-based stats. Identities = 52/133 (39%), Positives = 78/133 (58%), Gaps = 3/133 (2%) Query: 24 VQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHI 83 VQALYQ++ G ++ E+ +RF + D Y+ D ++F ++ G++ + + Sbjct: 25 VQALYQMETSGSGAKAVVKEFRDHRFGYE---DEPGDYVETDEDFFENLVTGIVSIQADV 81 Query: 84 DLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEP 143 D IS L E W SRLD + +ILRAG ELI VP V+I+EYV +AH FF G EP Sbjct: 82 DKRISGVLKEGWKLSRLDATVRAILRAGGYELIARKDVPPAVVINEYVDVAHAFFEGTEP 141 Query: 144 KFINAVLDKVSRK 156 F+NA LD ++++ Sbjct: 142 GFVNATLDALAKQ 154 >gi|254452714|ref|ZP_05066151.1| transcription antitermination factor NusB [Octadecabacter antarcticus 238] gi|198267120|gb|EDY91390.1| transcription antitermination factor NusB [Octadecabacter antarcticus 238] Length = 146 Score = 160 bits (406), Expect = 6e-38, Method: Composition-based stats. Identities = 52/144 (36%), Positives = 81/144 (56%), Gaps = 5/144 (3%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 + +RL AVQAL+Q++ + + E+E +RF A E D D+ FR+++ Sbjct: 2 KSASRLYAVQALFQMEHSSQTIESVTREFEDHRFGAVYEGDE---LAEGDVNLFRMLVET 58 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135 ++ + ID + L KW R+D L ++ RA +ELI P +V ISEYV +A Sbjct: 59 AVNEQTKIDQMTDRALVAKWPLGRIDPTLRALFRAAGVELIGR-DTPPKVAISEYVDVAK 117 Query: 136 DFFY-GDEPKFINAVLDKVSRKEE 158 FF G+EPKF+NAVLD ++R+ + Sbjct: 118 AFFDGGEEPKFVNAVLDHMARQAK 141 >gi|307293552|ref|ZP_07573396.1| NusB antitermination factor [Sphingobium chlorophenolicum L-1] gi|306879703|gb|EFN10920.1| NusB antitermination factor [Sphingobium chlorophenolicum L-1] Length = 148 Score = 160 bits (406), Expect = 6e-38, Method: Composition-based stats. Identities = 55/145 (37%), Positives = 81/145 (55%), Gaps = 3/145 (2%) Query: 12 LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71 S R ARLAAVQALYQ+++ G ++ E+ +R A E + Y + +F Sbjct: 4 RSKSRSAARLAAVQALYQLEMEGTPIHLLLHEFHQHRLGATIE---DVTYAQAEESFFDD 60 Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131 ++ GV R++ ID LI++ L++ WS RLD + ILRAG EL+ V ISEYV Sbjct: 61 VVQGVDRRREEIDALIAARLSKGWSLERLDKPMRQILRAGTYELLARKDVATGTAISEYV 120 Query: 132 CIAHDFFYGDEPKFINAVLDKVSRK 156 +AH F+ E F+N +LD V++ Sbjct: 121 DVAHAFYDKREAGFVNGLLDAVAKD 145 >gi|261346385|ref|ZP_05974029.1| transcription antitermination factor NusB [Providencia rustigianii DSM 4541] gi|282565703|gb|EFB71238.1| transcription antitermination factor NusB [Providencia rustigianii DSM 4541] Length = 138 Score = 160 bits (406), Expect = 6e-38, Method: Composition-based stats. Identities = 41/141 (29%), Positives = 63/141 (44%), Gaps = 13/141 (9%) Query: 21 LAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRK 80 AVQA+Y + G E+ E+ E VD+ +FR +I G+ Sbjct: 11 ECAVQAIYSWQLSGNPIAEVEYEFLA-----------EQDMSDVDVNYFRELISGIASNA 59 Query: 81 QHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYG 140 +D L+S L+ + L + +ILR + EL VP +V I+E + +A F Sbjct: 60 TKLDQLMSPYLSRQ--LEELGQVEKAILRVSMYELSYRQDVPFKVAINEGIELAKVFGAE 117 Query: 141 DEPKFINAVLDKVSRKEEIKR 161 D KF+N VLDK + K+ Sbjct: 118 DSHKFVNGVLDKAAPVVRRKK 138 >gi|85058631|ref|YP_454333.1| transcription antitermination protein NusB [Sodalis glossinidius str. 'morsitans'] gi|119390825|sp|Q2NV97|NUSB_SODGM RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|84779151|dbj|BAE73928.1| N utilization substance protein B [Sodalis glossinidius str. 'morsitans'] Length = 139 Score = 160 bits (406), Expect = 6e-38, Method: Composition-based stats. Identities = 39/142 (27%), Positives = 63/142 (44%), Gaps = 13/142 (9%) Query: 21 LAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRK 80 AVQALY + +I ++ E VD+ +FR + G Sbjct: 11 ECAVQALYSWQLSHNDIADIEVQFLA-----------EQDTSDVDVAYFRDLYAGAATNA 59 Query: 81 QHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYG 140 Q +D L++ L+ + L + ++LR + EL + VP +V I+E + +A F Sbjct: 60 QELDKLMAPYLSRQ--LEELGHVERAVLRIALFELSKRQDVPYKVAINEAIELAKTFGAE 117 Query: 141 DEPKFINAVLDKVSRKEEIKRS 162 + KFIN VLDKV+ + R Sbjct: 118 ESHKFINGVLDKVAPQIRPNRK 139 >gi|262042439|ref|ZP_06015599.1| transcription termination/antitermination factor NusB [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|259040214|gb|EEW41325.1| transcription termination/antitermination factor NusB [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] Length = 139 Score = 160 bits (405), Expect = 6e-38, Method: Composition-based stats. Identities = 36/134 (26%), Positives = 62/134 (46%), Gaps = 13/134 (9%) Query: 21 LAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRK 80 AVQALY + ++ ++ E +VD+ +FR ++ GV Sbjct: 11 ECAVQALYSWQLSHNDIADVEYQFLA-----------EQDVKYVDVLYFRELLSGVATNS 59 Query: 81 QHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYG 140 ++D L+ L+ + L + ++LR + EL + VP +V I+E + +A F Sbjct: 60 AYLDGLMKPYLSRQ--LEELGQVEKAVLRIALFELSKRDDVPYKVAINEAIELAKTFGAE 117 Query: 141 DEPKFINAVLDKVS 154 D KF+N VLDK + Sbjct: 118 DSHKFVNGVLDKAA 131 >gi|152968941|ref|YP_001334050.1| transcription antitermination protein NusB [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|238893353|ref|YP_002918087.1| transcription antitermination protein NusB [Klebsiella pneumoniae NTUH-K2044] gi|330006911|ref|ZP_08305783.1| transcription antitermination factor NusB [Klebsiella sp. MS 92-3] gi|166215693|sp|A6T5E9|NUSB_KLEP7 RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|150953790|gb|ABR75820.1| transcription antitermination protein NusB [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|238545669|dbj|BAH62020.1| transcription antitermination protein [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044] gi|328535665|gb|EGF62114.1| transcription antitermination factor NusB [Klebsiella sp. MS 92-3] Length = 139 Score = 160 bits (405), Expect = 6e-38, Method: Composition-based stats. Identities = 36/134 (26%), Positives = 61/134 (45%), Gaps = 13/134 (9%) Query: 21 LAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRK 80 AVQALY + ++ ++ E VD+ +FR ++ GV Sbjct: 11 ECAVQALYSWQLSHNDIADVEYQFLA-----------EQDVKDVDVLYFRELLSGVATNS 59 Query: 81 QHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYG 140 ++D L+ L+ + L + ++LR + EL + VP +V I+E + +A F Sbjct: 60 AYLDGLMKPYLSRQ--LEELGQVEKAVLRIALFELSKRDDVPYKVAINEAIELAKTFGAE 117 Query: 141 DEPKFINAVLDKVS 154 D KF+N VLDK + Sbjct: 118 DSHKFVNGVLDKAA 131 >gi|261822526|ref|YP_003260632.1| transcription antitermination protein NusB [Pectobacterium wasabiae WPP163] gi|261606539|gb|ACX89025.1| NusB antitermination factor [Pectobacterium wasabiae WPP163] Length = 139 Score = 160 bits (405), Expect = 7e-38, Method: Composition-based stats. Identities = 37/134 (27%), Positives = 63/134 (47%), Gaps = 13/134 (9%) Query: 21 LAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRK 80 AVQALY + ++ ++ + E VD+ +FR ++ GV + Sbjct: 11 ECAVQALYSWQLSKNDIADVEHQFLS-----------EQDVKDVDIAYFRELLAGVATQA 59 Query: 81 QHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYG 140 + +D L++ L+ L + +ILR + EL + VP +V I+E + +A F Sbjct: 60 EKLDQLMAPFLSRH--IDELGQVEKAILRLAMFELSKREDVPYKVAINEAIELAKTFGAE 117 Query: 141 DEPKFINAVLDKVS 154 D KF+N VLDK + Sbjct: 118 DSHKFVNGVLDKAA 131 >gi|300721781|ref|YP_003711059.1| transcription termination; L factor [Xenorhabdus nematophila ATCC 19061] gi|297628276|emb|CBJ88837.1| transcription termination; L factor [Xenorhabdus nematophila ATCC 19061] Length = 138 Score = 160 bits (405), Expect = 7e-38, Method: Composition-based stats. Identities = 40/141 (28%), Positives = 63/141 (44%), Gaps = 13/141 (9%) Query: 21 LAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRK 80 AVQA+Y + S +I E+ + E VD+ +FR ++ GV Sbjct: 11 ECAVQAIYSWQLSNNSIADIELEFLS-----------EQDVTGVDITYFRELLSGVAVNA 59 Query: 81 QHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYG 140 +D L++ L+ + L + +ILR + EL VP +V I+E + +A F Sbjct: 60 TKLDALMAPYLSRQ--LEELGQVEKAILRVAMFELSFRDDVPYKVAINEGIELAKTFGAE 117 Query: 141 DEPKFINAVLDKVSRKEEIKR 161 D KF+N VLDK K+ Sbjct: 118 DSHKFVNGVLDKAGPAARRKK 138 >gi|259909279|ref|YP_002649635.1| transcription antitermination protein NusB [Erwinia pyrifoliae Ep1/96] gi|292487447|ref|YP_003530319.1| transcription antitermination protein NusB [Erwinia amylovora CFBP1430] gi|292898689|ref|YP_003538058.1| N utilization substance protein B [Erwinia amylovora ATCC 49946] gi|224964901|emb|CAX56424.1| N utilization substance protein B [Erwinia pyrifoliae Ep1/96] gi|283479334|emb|CAY75250.1| transcription antitermination protein NusB [Erwinia pyrifoliae DSM 12163] gi|291198537|emb|CBJ45645.1| N utilization substance protein B [Erwinia amylovora ATCC 49946] gi|291552866|emb|CBA19911.1| transcription antitermination protein NusB [Erwinia amylovora CFBP1430] gi|310766819|gb|ADP11769.1| transcription antitermination protein NusB [Erwinia sp. Ejp617] gi|312171550|emb|CBX79808.1| transcription antitermination protein NusB [Erwinia amylovora ATCC BAA-2158] Length = 139 Score = 160 bits (405), Expect = 7e-38, Method: Composition-based stats. Identities = 39/142 (27%), Positives = 63/142 (44%), Gaps = 13/142 (9%) Query: 21 LAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRK 80 AVQALY I ++ ++ E VD+ +FR ++ GV Sbjct: 11 ECAVQALYSWQISKNDIADVEYQFLA-----------EQDVKDVDITYFRELVGGVATHS 59 Query: 81 QHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYG 140 ++D L+ L+ + L + +ILR + EL + VP +V I+E + +A F Sbjct: 60 AYLDDLMKPFLSRQ--LEELGQVEKAILRISLFELSKRSDVPYKVAINEGIELAKVFGAE 117 Query: 141 DEPKFINAVLDKVSRKEEIKRS 162 D KF+N VLDK + + R Sbjct: 118 DSHKFVNGVLDKAAPQIRPNRK 139 >gi|271499577|ref|YP_003332602.1| NusB antitermination factor [Dickeya dadantii Ech586] gi|270343132|gb|ACZ75897.1| NusB antitermination factor [Dickeya dadantii Ech586] Length = 139 Score = 160 bits (405), Expect = 7e-38, Method: Composition-based stats. Identities = 37/132 (28%), Positives = 63/132 (47%), Gaps = 13/132 (9%) Query: 21 LAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRK 80 AVQALY + ++ ++ + E VD+ +FR ++ GV + Sbjct: 11 ECAVQALYSWQLSKNDIADVELQFLS-----------EQDVKGVDIAYFRELLAGVATQA 59 Query: 81 QHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYG 140 + +D ++ L+ + + L + +ILR V EL + VP +V I+E + +A F Sbjct: 60 EKLDAQMAPYLSRQ--LNELGQVERAILRLAVYELSKREDVPYKVAINEAIELAKVFGAE 117 Query: 141 DEPKFINAVLDK 152 D KF+N VLDK Sbjct: 118 DSHKFVNGVLDK 129 >gi|94496077|ref|ZP_01302655.1| NusB antitermination factor [Sphingomonas sp. SKA58] gi|94424256|gb|EAT09279.1| NusB antitermination factor [Sphingomonas sp. SKA58] Length = 148 Score = 160 bits (405), Expect = 8e-38, Method: Composition-based stats. Identities = 55/145 (37%), Positives = 80/145 (55%), Gaps = 3/145 (2%) Query: 12 LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71 S R ARLAAVQALYQ+++ G ++ E+ +R A E + Y + +F Sbjct: 4 RSKSRSAARLAAVQALYQLEMEGTPLASLLHEFHQHRLGATIE---DVTYAQAEESFFDD 60 Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131 I+ GV R+ ID L+++ L+ WS RLD + ILRAG EL+ V +ISEYV Sbjct: 61 IVTGVDKRRAEIDALVAARLSSGWSMDRLDKPMRQILRAGTYELLARKDVGTGTVISEYV 120 Query: 132 CIAHDFFYGDEPKFINAVLDKVSRK 156 +AH F+ E F+N +LD V++ Sbjct: 121 DVAHAFYDKREAGFVNGLLDGVAKD 145 >gi|88859180|ref|ZP_01133821.1| transcription termination factor [Pseudoalteromonas tunicata D2] gi|88819406|gb|EAR29220.1| transcription termination factor [Pseudoalteromonas tunicata D2] Length = 136 Score = 160 bits (405), Expect = 8e-38, Method: Composition-based stats. Identities = 41/150 (27%), Positives = 76/150 (50%), Gaps = 14/150 (9%) Query: 10 LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF 69 +K + RR AR+ A+QA+Y + G + +I + ++ +E+ +D+E+F Sbjct: 1 MKPAARR-KARILALQAIYSWQVSGNAIADI-----------EQQMLLENDISKIDVEYF 48 Query: 70 RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISE 129 + + GV + + +D+++S L + +D + +ILR EL VP +V I+E Sbjct: 49 KDLACGVAVQHKVLDVILSPHLAR--PYEDIDFVEKAILRLSAYELKFREDVPYKVAINE 106 Query: 130 YVCIAHDFFYGDEPKFINAVLDKVSRKEEI 159 + +A F D KF+N VLDK ++ Sbjct: 107 GIELAKMFGAEDSHKFVNGVLDKAVKELRA 136 >gi|304395478|ref|ZP_07377361.1| NusB antitermination factor [Pantoea sp. aB] gi|304356772|gb|EFM21136.1| NusB antitermination factor [Pantoea sp. aB] Length = 139 Score = 160 bits (405), Expect = 8e-38, Method: Composition-based stats. Identities = 38/142 (26%), Positives = 63/142 (44%), Gaps = 13/142 (9%) Query: 21 LAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRK 80 AVQALY + ++ ++ E VD+ +FR ++ GV Sbjct: 11 ECAVQALYSWQLSNNDIADVEYQFLA-----------EQDVKDVDITYFRELLSGVATNS 59 Query: 81 QHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYG 140 ++D L+ L+ + L + +ILR + EL + + VP +V I+E + +A F Sbjct: 60 AYLDGLMKPYLSRQ--LEELGQVEKAILRISLYELSKRNDVPYKVAINEGIELAKVFGAE 117 Query: 141 DEPKFINAVLDKVSRKEEIKRS 162 D KF+N VLDK + R Sbjct: 118 DSHKFVNGVLDKAGPQIRPTRK 139 >gi|322834070|ref|YP_004214097.1| NusB antitermination factor [Rahnella sp. Y9602] gi|321169271|gb|ADW74970.1| NusB antitermination factor [Rahnella sp. Y9602] Length = 137 Score = 160 bits (405), Expect = 8e-38, Method: Composition-based stats. Identities = 39/132 (29%), Positives = 64/132 (48%), Gaps = 13/132 (9%) Query: 21 LAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRK 80 AVQALY + ++ E+ T + D VD+ +FR ++ GV + Sbjct: 11 ECAVQALYSWQLSKNDIADVELEFLTEQDVKD-----------VDIAYFRELLAGVANSA 59 Query: 81 QHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYG 140 + +D L++ L+ + L + +ILR + EL + VP +V I+E + +A F Sbjct: 60 EKLDALMAPYLSRQ--LDELGQVERAILRLALFELSKRQDVPYKVAINEAIELAKTFGAE 117 Query: 141 DEPKFINAVLDK 152 D KF+N VLDK Sbjct: 118 DSHKFVNGVLDK 129 >gi|308174227|ref|YP_003920932.1| transcription termination factor NusB [Bacillus amyloliquefaciens DSM 7] gi|307607091|emb|CBI43462.1| transcription termination factor NusB [Bacillus amyloliquefaciens DSM 7] gi|328554172|gb|AEB24664.1| transcription antitermination protein NusB [Bacillus amyloliquefaciens TA208] gi|328912564|gb|AEB64160.1| transcription termination factor NusB [Bacillus amyloliquefaciens LL3] Length = 130 Score = 159 bits (404), Expect = 8e-38, Method: Composition-based stats. Identities = 40/144 (27%), Positives = 67/144 (46%), Gaps = 16/144 (11%) Query: 15 RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74 +R AR A+QAL+QID+ + E I + LD E +F +++ Sbjct: 2 KRRTAREKALQALFQIDVSDIAPNEAI----------EHALDGEKTD-----AFFEQLVY 46 Query: 75 GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134 GV++ + +D +IS L W R+ + +ILR V E++ +P V ++E + +A Sbjct: 47 GVIEHQVQLDEMISGHLV-NWKLDRIANVDRAILRLAVYEMVYTDDIPANVSLNEAIELA 105 Query: 135 HDFFYGDEPKFINAVLDKVSRKEE 158 F KF+N VL + E Sbjct: 106 KRFGDDKAAKFVNGVLSNIKTDIE 129 >gi|254522951|ref|ZP_05135006.1| transcription antitermination factor NusB [Stenotrophomonas sp. SKA14] gi|219720542|gb|EED39067.1| transcription antitermination factor NusB [Stenotrophomonas sp. SKA14] Length = 159 Score = 159 bits (404), Expect = 8e-38, Method: Composition-based stats. Identities = 45/168 (26%), Positives = 68/168 (40%), Gaps = 20/168 (11%) Query: 3 IQDNKKDLKLSHR-------RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTEL 55 K K R R AR AVQALY I G + +I+++ Sbjct: 4 NTQGKPSGKPVRRDGVDPVLRSRARRRAVQALYAWQISGGNAQSLIAQFAH--------- 54 Query: 56 DVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLEL 115 E DL +F ++HGV+D ++ ID + L +D I ++LR EL Sbjct: 55 --EQAREIADLAYFEALVHGVLDNRRDIDEALGPYLDRG--IEEVDAIERAVLRLAGYEL 110 Query: 116 IECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRSG 163 VP V+I+E + A F ++N VLD+ + + SG Sbjct: 111 RYRLDVPYRVVINEAIESAKRFGSEHGHTYVNGVLDRAAVEWRKVESG 158 >gi|251792444|ref|YP_003007170.1| transcription antitermination protein NusB [Aggregatibacter aphrophilus NJ8700] gi|247533837|gb|ACS97083.1| transcription antitermination factor NusB [Aggregatibacter aphrophilus NJ8700] Length = 141 Score = 159 bits (404), Expect = 9e-38, Method: Composition-based stats. Identities = 44/144 (30%), Positives = 65/144 (45%), Gaps = 14/144 (9%) Query: 11 KLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFR 70 K+S RR AR AVQALY I S + + T E VD +FR Sbjct: 7 KISPRRR-ARECAVQALYSWAISQNSPELVELNFMT-----------EQDMNGVDKPYFR 54 Query: 71 VIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEY 130 + ++ ++ + L + LD I +ILR V EL VP +V+I+E Sbjct: 55 KLFRQTVENVDAVEHTMQGYLDR--TLDELDPIEKAILRLAVYELQFEADVPYKVVINEA 112 Query: 131 VCIAHDFFYGDEPKFINAVLDKVS 154 + +A F + K+IN VLDK++ Sbjct: 113 IEVAKVFGADESHKYINGVLDKIA 136 >gi|152998045|ref|YP_001342880.1| NusB antitermination factor [Marinomonas sp. MWYL1] gi|226738905|sp|A6W2L6|NUSB_MARMS RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|150838969|gb|ABR72945.1| NusB antitermination factor [Marinomonas sp. MWYL1] Length = 174 Score = 159 bits (404), Expect = 9e-38, Method: Composition-based stats. Identities = 44/162 (27%), Positives = 76/162 (46%), Gaps = 13/162 (8%) Query: 2 TIQDNKKDLKLSHR--RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVES 59 T +KD K S R +R A+QA+YQ + + +EI +++ +D + Sbjct: 11 TPAPKRKDKKPSRSQLRSASRRLALQAVYQWQMNKTAVSEIETQFV---------IDQDR 61 Query: 60 VYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECH 119 D +FR ++ GV + +D L L S LD I +++R G EL + Sbjct: 62 DMDSCDKVYFRELLQGVTASAKKLDTLFEELLDR--PLSELDPIELAVMRIGSYELSQRL 119 Query: 120 SVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKR 161 VP V I+E V +A F + K++N +LDK++++ + Sbjct: 120 DVPYRVAINESVELAKGFGATESHKYVNGILDKLAQRVRREE 161 >gi|311280694|ref|YP_003942925.1| NusB antitermination factor [Enterobacter cloacae SCF1] gi|308749889|gb|ADO49641.1| NusB antitermination factor [Enterobacter cloacae SCF1] Length = 139 Score = 159 bits (404), Expect = 9e-38, Method: Composition-based stats. Identities = 36/142 (25%), Positives = 63/142 (44%), Gaps = 13/142 (9%) Query: 21 LAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRK 80 AVQALY + ++ ++ + D VD+ +FR ++ GV Sbjct: 11 ECAVQALYSWQLSKNDIADVEYQFLAEQDVKD-----------VDVLYFRELLSGVATNS 59 Query: 81 QHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYG 140 ++D L+ L+ + L + ++LR + EL + VP +V I+E + +A F Sbjct: 60 AYLDGLMKPYLSRQ--LEELGQVEKAVLRIALFELSKRDDVPYKVAINEAIELAKTFGAE 117 Query: 141 DEPKFINAVLDKVSRKEEIKRS 162 D KF+N VLDK + + Sbjct: 118 DSHKFVNGVLDKAAPAIRPHKK 139 >gi|294010264|ref|YP_003543724.1| N utilization substance protein B [Sphingobium japonicum UT26S] gi|292673594|dbj|BAI95112.1| N utilization substance protein B [Sphingobium japonicum UT26S] Length = 148 Score = 159 bits (404), Expect = 1e-37, Method: Composition-based stats. Identities = 55/145 (37%), Positives = 80/145 (55%), Gaps = 3/145 (2%) Query: 12 LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71 S R ARLAAVQALYQ+++ G ++ E+ +R A E + Y + +F Sbjct: 4 RSKSRSAARLAAVQALYQLEMEGTPLHLLLHEFHQHRLGATIE---DVTYAQAEESFFDD 60 Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131 ++ GV R++ ID LI + L++ WS RLD + ILRAG EL+ V ISEYV Sbjct: 61 VVQGVDRRREEIDALIVARLSKGWSLERLDKPMRQILRAGTYELLARKDVATGTAISEYV 120 Query: 132 CIAHDFFYGDEPKFINAVLDKVSRK 156 +AH F+ E F+N +LD V++ Sbjct: 121 DVAHAFYDKREAGFVNGLLDAVAKD 145 >gi|126666701|ref|ZP_01737678.1| transcription antitermination protein NusB [Marinobacter sp. ELB17] gi|126628746|gb|EAZ99366.1| transcription antitermination protein NusB [Marinobacter sp. ELB17] Length = 166 Score = 159 bits (404), Expect = 1e-37, Method: Composition-based stats. Identities = 44/158 (27%), Positives = 74/158 (46%), Gaps = 13/158 (8%) Query: 2 TIQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVY 61 T K + R AR A+Q LYQ + + I +E+ V++ Sbjct: 16 TSSPGKSAQPKAGDRRRARGMAMQGLYQRHFSKSAISNIEAEFM-----------VDNDM 64 Query: 62 LHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSV 121 VDL +FR ++HG + +D LI L +D + +I+R G EL V Sbjct: 65 SKVDLLYFRDLLHGTSREQAELDRLIEPFLDR--PLQEVDPVELAIVRLGAYELKFRLDV 122 Query: 122 PVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEI 159 P +V+I+E + +A F + +F+N++LDK+SR+ + Sbjct: 123 PYKVVINEGIEMAKRFGGTEGHRFVNSILDKLSRRLRL 160 >gi|1303915|dbj|BAA12571.1| YqhZ [Bacillus subtilis] Length = 131 Score = 159 bits (404), Expect = 1e-37, Method: Composition-based stats. Identities = 37/139 (26%), Positives = 61/139 (43%), Gaps = 16/139 (11%) Query: 15 RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74 +R AR A+QAL+QID+ + E I +F ++H Sbjct: 2 KRRTAREKALQALFQIDVSDIAVNEAIEHALDEEKTD---------------PFFEQLVH 46 Query: 75 GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134 GV++ + +D +IS L W R+ + +ILR E+ +PV V ++E + +A Sbjct: 47 GVLEHQDQLDEMISKHLV-NWKLDRIANVDRAILRLAAYEMAYAEDIPVNVSMNEAIELA 105 Query: 135 HDFFYGDEPKFINAVLDKV 153 F KF+N VL + Sbjct: 106 KRFGDDKATKFVNGVLSNI 124 >gi|290474696|ref|YP_003467576.1| transcription termination; L factor [Xenorhabdus bovienii SS-2004] gi|289174009|emb|CBJ80796.1| transcription termination; L factor [Xenorhabdus bovienii SS-2004] Length = 138 Score = 159 bits (404), Expect = 1e-37, Method: Composition-based stats. Identities = 37/141 (26%), Positives = 62/141 (43%), Gaps = 13/141 (9%) Query: 21 LAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRK 80 AVQA+Y + ++ ++ + E VD+ +FR ++ GV Sbjct: 11 ECAVQAIYSWQLSKNDIADVEFQFLS-----------EQDVTGVDITYFRELLTGVAVNA 59 Query: 81 QHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYG 140 +D L++ L+ + L + +ILR + EL VP +V I+E + +A F Sbjct: 60 AKLDALMAPYLSRQ--LEELGQVEKAILRVAMFELSFRDDVPYKVAINEGIELAKTFGAE 117 Query: 141 DEPKFINAVLDKVSRKEEIKR 161 D KF+N VLDK K+ Sbjct: 118 DSHKFVNGVLDKAGPAARKKK 138 >gi|253990956|ref|YP_003042312.1| transcription antitermination protein NusB [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|253782406|emb|CAQ85570.1| N utilization substance protein B [Photorhabdus asymbiotica] Length = 139 Score = 159 bits (403), Expect = 1e-37, Method: Composition-based stats. Identities = 37/132 (28%), Positives = 61/132 (46%), Gaps = 13/132 (9%) Query: 21 LAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRK 80 AVQA+Y + G ++ ++ + E VD+ +FR ++ GV Sbjct: 11 ECAVQAIYSWQLSGNDIADVELQFLS-----------EQDVTGVDVTYFRELLSGVAVNA 59 Query: 81 QHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYG 140 +D L++ L+ + L + +ILR + EL VP +V I+E + +A F Sbjct: 60 VKLDALMAPYLSRQ--LEELGQVEKAILRVAMFELSYRDDVPYKVAINEAIELAKVFGAE 117 Query: 141 DEPKFINAVLDK 152 D KF+N VLDK Sbjct: 118 DSHKFVNGVLDK 129 >gi|22124909|ref|NP_668332.1| transcription antitermination protein NusB [Yersinia pestis KIM 10] gi|45440599|ref|NP_992138.1| transcription antitermination protein NusB [Yersinia pestis biovar Microtus str. 91001] gi|51595286|ref|YP_069477.1| transcription antitermination protein NusB [Yersinia pseudotuberculosis IP 32953] gi|108808666|ref|YP_652582.1| transcription antitermination protein NusB [Yersinia pestis Antiqua] gi|108811072|ref|YP_646839.1| transcription antitermination protein NusB [Yersinia pestis Nepal516] gi|145600075|ref|YP_001164151.1| transcription antitermination protein NusB [Yersinia pestis Pestoides F] gi|149364973|ref|ZP_01887008.1| N utilization substance protein B [Yersinia pestis CA88-4125] gi|153950126|ref|YP_001402075.1| transcription antitermination protein NusB [Yersinia pseudotuberculosis IP 31758] gi|162421924|ref|YP_001607525.1| transcription antitermination protein NusB [Yersinia pestis Angola] gi|165926545|ref|ZP_02222377.1| transcription antitermination factor NusB [Yersinia pestis biovar Orientalis str. F1991016] gi|165935993|ref|ZP_02224563.1| transcription antitermination factor NusB [Yersinia pestis biovar Orientalis str. IP275] gi|166011125|ref|ZP_02232023.1| transcription antitermination factor NusB [Yersinia pestis biovar Antiqua str. E1979001] gi|166212965|ref|ZP_02239000.1| transcription antitermination factor NusB [Yersinia pestis biovar Antiqua str. B42003004] gi|167398502|ref|ZP_02304026.1| transcription antitermination factor NusB [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167421645|ref|ZP_02313398.1| transcription antitermination factor NusB [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167423478|ref|ZP_02315231.1| transcription antitermination factor NusB [Yersinia pestis biovar Mediaevalis str. K1973002] gi|170025473|ref|YP_001721978.1| transcription antitermination protein NusB [Yersinia pseudotuberculosis YPIII] gi|186894303|ref|YP_001871415.1| transcription antitermination protein NusB [Yersinia pseudotuberculosis PB1/+] gi|218930211|ref|YP_002348086.1| transcription antitermination protein NusB [Yersinia pestis CO92] gi|229838786|ref|ZP_04458945.1| transcription antitermination protein [Yersinia pestis biovar Orientalis str. PEXU2] gi|229896060|ref|ZP_04511230.1| transcription antitermination protein [Yersinia pestis Pestoides A] gi|229899354|ref|ZP_04514497.1| transcription antitermination protein [Yersinia pestis biovar Orientalis str. India 195] gi|229901299|ref|ZP_04516421.1| transcription antitermination protein [Yersinia pestis Nepal516] gi|270489488|ref|ZP_06206562.1| transcription antitermination factor NusB [Yersinia pestis KIM D27] gi|294504909|ref|YP_003568971.1| transcription antitermination protein NusB [Yersinia pestis Z176003] gi|22095956|sp|Q8ZC42|NUSB_YERPE RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|81640219|sp|Q66DV7|NUSB_YERPS RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|119390849|sp|Q1C4I5|NUSB_YERPA RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|119390850|sp|Q1CL91|NUSB_YERPN RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|166215730|sp|A4TPG6|NUSB_YERPP RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|166918813|sp|A7FLE7|NUSB_YERP3 RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|238687286|sp|A9R2J9|NUSB_YERPG RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|238688409|sp|B1JIE1|NUSB_YERPY RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|238691415|sp|B2K6T4|NUSB_YERPB RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|21957745|gb|AAM84583.1|AE013703_13 transcription termination; L factor [Yersinia pestis KIM 10] gi|45435456|gb|AAS61015.1| N utilization substance protein B [Yersinia pestis biovar Microtus str. 91001] gi|51588568|emb|CAH20176.1| transcription termination; L factor [Yersinia pseudotuberculosis IP 32953] gi|108774720|gb|ABG17239.1| N utilization substance protein B [Yersinia pestis Nepal516] gi|108780579|gb|ABG14637.1| N utilization substance protein B [Yersinia pestis Antiqua] gi|115348822|emb|CAL21776.1| N utilization substance protein B [Yersinia pestis CO92] gi|145211771|gb|ABP41178.1| N utilization substance protein B [Yersinia pestis Pestoides F] gi|149291386|gb|EDM41460.1| N utilization substance protein B [Yersinia pestis CA88-4125] gi|152961621|gb|ABS49082.1| transcription antitermination factor NusB [Yersinia pseudotuberculosis IP 31758] gi|162354739|gb|ABX88687.1| transcription antitermination factor NusB [Yersinia pestis Angola] gi|165916138|gb|EDR34745.1| transcription antitermination factor NusB [Yersinia pestis biovar Orientalis str. IP275] gi|165921473|gb|EDR38670.1| transcription antitermination factor NusB [Yersinia pestis biovar Orientalis str. F1991016] gi|165990125|gb|EDR42426.1| transcription antitermination factor NusB [Yersinia pestis biovar Antiqua str. E1979001] gi|166205752|gb|EDR50232.1| transcription antitermination factor NusB [Yersinia pestis biovar Antiqua str. B42003004] gi|166960564|gb|EDR56585.1| transcription antitermination factor NusB [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167051006|gb|EDR62414.1| transcription antitermination factor NusB [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167057648|gb|EDR67394.1| transcription antitermination factor NusB [Yersinia pestis biovar Mediaevalis str. K1973002] gi|169752007|gb|ACA69525.1| NusB antitermination factor [Yersinia pseudotuberculosis YPIII] gi|186697329|gb|ACC87958.1| NusB antitermination factor [Yersinia pseudotuberculosis PB1/+] gi|229681228|gb|EEO77322.1| transcription antitermination protein [Yersinia pestis Nepal516] gi|229687756|gb|EEO79829.1| transcription antitermination protein [Yersinia pestis biovar Orientalis str. India 195] gi|229695152|gb|EEO85199.1| transcription antitermination protein [Yersinia pestis biovar Orientalis str. PEXU2] gi|229700983|gb|EEO89012.1| transcription antitermination protein [Yersinia pestis Pestoides A] gi|262362975|gb|ACY59696.1| transcription antitermination protein NusB [Yersinia pestis D106004] gi|262366895|gb|ACY63452.1| transcription antitermination protein NusB [Yersinia pestis D182038] gi|270337992|gb|EFA48769.1| transcription antitermination factor NusB [Yersinia pestis KIM D27] gi|294355368|gb|ADE65709.1| transcription antitermination protein NusB [Yersinia pestis Z176003] gi|320016368|gb|ADV99939.1| transcription antitermination protein [Yersinia pestis biovar Medievalis str. Harbin 35] Length = 138 Score = 159 bits (403), Expect = 1e-37, Method: Composition-based stats. Identities = 37/134 (27%), Positives = 64/134 (47%), Gaps = 13/134 (9%) Query: 21 LAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRK 80 AVQALY + ++ ++ + + D VD+ +FR ++ GV Sbjct: 11 ECAVQALYSWQLSKNDIADVELQFLSEQDVKD-----------VDIAYFRELLSGVAVNA 59 Query: 81 QHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYG 140 +D L++ L+ + L + ++LR + EL + VP +V I+E + +A F Sbjct: 60 ASLDALMAPFLSRQ--LEELGQVERAVLRIALFELSKRDDVPYKVAINEAIELAKTFGAE 117 Query: 141 DEPKFINAVLDKVS 154 D KF+N VLDKV+ Sbjct: 118 DSHKFVNGVLDKVA 131 >gi|154686696|ref|YP_001421857.1| transcription antitermination protein NusB [Bacillus amyloliquefaciens FZB42] gi|166215663|sp|A7Z6K0|NUSB_BACA2 RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|154352547|gb|ABS74626.1| NusB [Bacillus amyloliquefaciens FZB42] Length = 130 Score = 159 bits (403), Expect = 1e-37, Method: Composition-based stats. Identities = 39/144 (27%), Positives = 67/144 (46%), Gaps = 16/144 (11%) Query: 15 RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74 +R AR A+QAL+QID+ + + I + LD E +F +++ Sbjct: 2 KRRTAREKALQALFQIDVSDIAPNDAI----------EHALDGEKTD-----AFFEQLVY 46 Query: 75 GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134 GV++ + +D +IS L W R+ + +ILR V E++ +P V ++E + +A Sbjct: 47 GVIEHQVQLDEMISGHLV-NWKLDRIANVDRAILRLAVYEMVYSDDIPANVSLNEAIELA 105 Query: 135 HDFFYGDEPKFINAVLDKVSRKEE 158 F KF+N VL + E Sbjct: 106 KRFGDDKAAKFVNGVLSNIKTDIE 129 >gi|296101538|ref|YP_003611684.1| transcription antitermination protein NusB [Enterobacter cloacae subsp. cloacae ATCC 13047] gi|295055997|gb|ADF60735.1| transcription antitermination protein NusB [Enterobacter cloacae subsp. cloacae ATCC 13047] Length = 139 Score = 159 bits (403), Expect = 1e-37, Method: Composition-based stats. Identities = 36/142 (25%), Positives = 62/142 (43%), Gaps = 13/142 (9%) Query: 21 LAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRK 80 AVQALY + ++ ++ + E VD+ +FR ++ GV Sbjct: 11 ECAVQALYSWQLSQNDIADVEYQFLS-----------EQDVKDVDVLYFRELLSGVATNS 59 Query: 81 QHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYG 140 ++D L+ L+ L + ++LR + EL + VP +V I+E + +A F Sbjct: 60 AYLDGLMKPYLSR--LLEELGQVEKAVLRIALFELSKRDDVPYKVAINEAIELAKTFGAE 117 Query: 141 DEPKFINAVLDKVSRKEEIKRS 162 D KF+N VLDK + + Sbjct: 118 DSHKFVNGVLDKAAPAIRPHKK 139 >gi|227327507|ref|ZP_03831531.1| transcription antitermination protein NusB [Pectobacterium carotovorum subsp. carotovorum WPP14] Length = 139 Score = 159 bits (403), Expect = 1e-37, Method: Composition-based stats. Identities = 38/134 (28%), Positives = 65/134 (48%), Gaps = 13/134 (9%) Query: 21 LAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRK 80 AVQALY + ++ ++ + E VD+ +FR ++ GV + Sbjct: 11 ECAVQALYSWQLSKNDIADVEHQFLS-----------EQDVKDVDITYFRELLAGVATQA 59 Query: 81 QHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYG 140 + +D L++ L+ + L + +ILR + EL + VP +V I+E + +A F Sbjct: 60 EKLDQLMAPFLSRQ--IEELGQVEKAILRLAMFELSKREDVPYKVAINEAIELAKIFGAE 117 Query: 141 DEPKFINAVLDKVS 154 D KF+N VLDKV+ Sbjct: 118 DSHKFVNGVLDKVA 131 >gi|88704433|ref|ZP_01102147.1| N utilization substance protein B [Congregibacter litoralis KT71] gi|88701484|gb|EAQ98589.1| N utilization substance protein B [Congregibacter litoralis KT71] Length = 150 Score = 159 bits (403), Expect = 1e-37, Method: Composition-based stats. Identities = 52/148 (35%), Positives = 77/148 (52%), Gaps = 13/148 (8%) Query: 14 HRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVII 73 RR AR A+QALYQ + G + T+I +E+ T + + VDLE+F+ +I Sbjct: 11 ARRRKARHYALQALYQWHMAGATATDIEAEFRT-----------DYDFSVVDLEYFQALI 59 Query: 74 HGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCI 133 HGV + +D L+ L + LD I S+LR G EL + VP V+I+E V + Sbjct: 60 HGVPPLVEELDSLLEPLLDRE--IRELDPIERSLLRMGGFELRDRIDVPYRVVINESVAL 117 Query: 134 AHDFFYGDEPKFINAVLDKVSRKEEIKR 161 A F + K+IN VLDK++R+ Sbjct: 118 AKKFGAAESYKYINGVLDKLARQLRGPE 145 >gi|238787982|ref|ZP_04631778.1| N utilization substance protein B [Yersinia frederiksenii ATCC 33641] gi|238723930|gb|EEQ15574.1| N utilization substance protein B [Yersinia frederiksenii ATCC 33641] Length = 138 Score = 159 bits (403), Expect = 1e-37, Method: Composition-based stats. Identities = 37/141 (26%), Positives = 66/141 (46%), Gaps = 13/141 (9%) Query: 21 LAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRK 80 AVQALY + ++ ++ + + D VD+ +FR ++ GV Sbjct: 11 ECAVQALYSWQLSKNDIADVELQFLSEQDVKD-----------VDIAYFRELLSGVAVNA 59 Query: 81 QHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYG 140 +D L++ L+ + L + ++LR + EL + VP +V I+E + +A F Sbjct: 60 ASLDALMAPVLSRQ--LEELGQVERAVLRIALFELSKRDDVPYKVAINEAIELAKTFGAE 117 Query: 141 DEPKFINAVLDKVSRKEEIKR 161 D KF+N VLDK++ K+ Sbjct: 118 DSHKFVNGVLDKIAPMVRKKK 138 >gi|317492962|ref|ZP_07951386.1| transcription antitermination factor NusB [Enterobacteriaceae bacterium 9_2_54FAA] gi|316919084|gb|EFV40419.1| transcription antitermination factor NusB [Enterobacteriaceae bacterium 9_2_54FAA] Length = 139 Score = 159 bits (402), Expect = 1e-37, Method: Composition-based stats. Identities = 38/134 (28%), Positives = 66/134 (49%), Gaps = 13/134 (9%) Query: 21 LAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRK 80 AVQALY I ++ ++ + + D VD+ +FR ++ GV Sbjct: 11 ECAVQALYSWQISKNDIADVEYQFLSEQDVKD-----------VDISYFRELLSGVATNA 59 Query: 81 QHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYG 140 +++D L++ L+ + L + ++LR + EL + VP +V I+E + +A F Sbjct: 60 EYLDGLMAPVLSRQ--LEELGQVERAVLRISLFELSKREDVPYKVAINEGIELAKTFGAE 117 Query: 141 DEPKFINAVLDKVS 154 D KF+N VLDKV+ Sbjct: 118 DSHKFVNGVLDKVA 131 >gi|320540317|ref|ZP_08039969.1| transcription antitermination protein [Serratia symbiotica str. Tucson] gi|320029637|gb|EFW11664.1| transcription antitermination protein [Serratia symbiotica str. Tucson] Length = 138 Score = 159 bits (402), Expect = 1e-37, Method: Composition-based stats. Identities = 38/141 (26%), Positives = 61/141 (43%), Gaps = 13/141 (9%) Query: 21 LAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRK 80 AVQALY + ++ ++ T E VD+ +FR + GV Sbjct: 11 ECAVQALYSWQLSKNDIADVEHQFLT-----------EQDVNGVDIAYFRELFSGVAVNA 59 Query: 81 QHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYG 140 +D L+ L+ + L + ++LR + EL VP +V I+E + +A F Sbjct: 60 GMLDTLMVPYLSRQ--LDELGQVERAVLRIALFELKMREDVPYKVAINEAIELAKTFGAE 117 Query: 141 DEPKFINAVLDKVSRKEEIKR 161 D KF+N VLDK + K+ Sbjct: 118 DSHKFVNGVLDKAAPTIRKKK 138 >gi|156935035|ref|YP_001438951.1| transcription antitermination protein NusB [Cronobacter sakazakii ATCC BAA-894] gi|166215688|sp|A7MFG4|NUSB_ENTS8 RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|156533289|gb|ABU78115.1| hypothetical protein ESA_02886 [Cronobacter sakazakii ATCC BAA-894] Length = 139 Score = 159 bits (402), Expect = 1e-37, Method: Composition-based stats. Identities = 36/142 (25%), Positives = 62/142 (43%), Gaps = 13/142 (9%) Query: 21 LAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRK 80 AVQALY + ++ ++ E VD+ +FR ++ GV Sbjct: 11 ECAVQALYSWQLSHNDIADVEYQFLA-----------EQDVKDVDVMYFRELLSGVATNS 59 Query: 81 QHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYG 140 ++D L+ L+ + L + ++LR + EL + VP +V I+E + +A F Sbjct: 60 GYLDGLMKPYLSRQ--LEELGQVEKAVLRIALFELSKRDDVPYKVAINEAIELAKVFGAE 117 Query: 141 DEPKFINAVLDKVSRKEEIKRS 162 D KF+N VLDK + + Sbjct: 118 DSHKFVNGVLDKAAPHIRPNKK 139 >gi|206577191|ref|YP_002240116.1| transcription antitermination factor NusB [Klebsiella pneumoniae 342] gi|288936865|ref|YP_003440924.1| NusB antitermination factor [Klebsiella variicola At-22] gi|290510079|ref|ZP_06549449.1| transcription antitermination factor NusB [Klebsiella sp. 1_1_55] gi|238055476|sp|B5Y0X5|NUSB_KLEP3 RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|206566249|gb|ACI08025.1| transcription antitermination factor NusB [Klebsiella pneumoniae 342] gi|288891574|gb|ADC59892.1| NusB antitermination factor [Klebsiella variicola At-22] gi|289776795|gb|EFD84793.1| transcription antitermination factor NusB [Klebsiella sp. 1_1_55] Length = 139 Score = 159 bits (402), Expect = 1e-37, Method: Composition-based stats. Identities = 36/134 (26%), Positives = 62/134 (46%), Gaps = 13/134 (9%) Query: 21 LAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRK 80 AVQALY + ++ ++ + D VD+ +FR ++ GV Sbjct: 11 ECAVQALYSWQLSHNDIADVEYQFLAEQDVKD-----------VDVLYFRELLSGVATNS 59 Query: 81 QHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYG 140 ++D L+ L+ + L + ++LR + EL + VP +V I+E + +A F Sbjct: 60 AYLDGLMKPYLSRQ--LEELGQVEKAVLRIALFELSKRDDVPYKVAINEAIELAKTFGAE 117 Query: 141 DEPKFINAVLDKVS 154 D KF+N VLDK + Sbjct: 118 DSHKFVNGVLDKAA 131 >gi|251796318|ref|YP_003011049.1| NusB antitermination factor [Paenibacillus sp. JDR-2] gi|247543944|gb|ACT00963.1| NusB antitermination factor [Paenibacillus sp. JDR-2] Length = 153 Score = 159 bits (402), Expect = 2e-37, Method: Composition-based stats. Identities = 41/153 (26%), Positives = 74/153 (48%), Gaps = 2/153 (1%) Query: 15 RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74 +R +AR AV +LYQ+++ + E + + ++ E++ E V + R +++ Sbjct: 2 KRRLAREIAVSSLYQLEMNEVTPMEAV-DMLMEEARSENEIEAEFVENDQTDNYVRELVN 60 Query: 75 GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134 GV + K ID + LT W RL + ILR E+ + VP + I+E + +A Sbjct: 61 GVAENKAAIDERLQHYLT-GWQVDRLSRVDRQILRLAYFEIAYRNDVPPKAAINEAIELA 119 Query: 135 HDFFYGDEPKFINAVLDKVSRKEEIKRSGCVSA 167 F + KF+N VL K+ ++ E + + S Sbjct: 120 KHFGTEESGKFVNGVLGKLLKEREGETANSEST 152 >gi|221310355|ref|ZP_03592202.1| transcription antitermination protein NusB [Bacillus subtilis subsp. subtilis str. 168] gi|221314679|ref|ZP_03596484.1| transcription antitermination protein NusB [Bacillus subtilis subsp. subtilis str. NCIB 3610] gi|221319602|ref|ZP_03600896.1| transcription antitermination protein NusB [Bacillus subtilis subsp. subtilis str. JH642] gi|221323878|ref|ZP_03605172.1| transcription antitermination protein NusB [Bacillus subtilis subsp. subtilis str. SMY] gi|255767541|ref|NP_390312.2| transcription antitermination protein NusB [Bacillus subtilis subsp. subtilis str. 168] gi|321311916|ref|YP_004204203.1| transcription antitermination protein NusB [Bacillus subtilis BSn5] gi|251757301|sp|P54520|NUSB_BACSU RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|225185169|emb|CAB14363.2| transcription termination factor NusB [Bacillus subtilis subsp. subtilis str. 168] gi|291484874|dbj|BAI85949.1| transcription antitermination protein NusB [Bacillus subtilis subsp. natto BEST195] gi|320018190|gb|ADV93176.1| transcription antitermination protein NusB [Bacillus subtilis BSn5] Length = 131 Score = 159 bits (402), Expect = 2e-37, Method: Composition-based stats. Identities = 38/144 (26%), Positives = 62/144 (43%), Gaps = 16/144 (11%) Query: 15 RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74 +R AR A+QAL+QID+ + E I +F ++H Sbjct: 2 KRRTAREKALQALFQIDVSDIAVNEAIEHALDEEKTD---------------PFFEQLVH 46 Query: 75 GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134 GV++ + +D +IS L W R+ + +ILR E+ +PV V ++E + +A Sbjct: 47 GVLEHQDQLDEMISKHLV-NWKLDRIANVDRAILRLAAYEMAYAEDIPVNVSMNEAIELA 105 Query: 135 HDFFYGDEPKFINAVLDKVSRKEE 158 F KF+N VL + E Sbjct: 106 KRFGDDKATKFVNGVLSNIKSDIE 129 >gi|157369317|ref|YP_001477306.1| transcription antitermination protein NusB [Serratia proteamaculans 568] gi|166918812|sp|A8GAN8|NUSB_SERP5 RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|157321081|gb|ABV40178.1| NusB antitermination factor [Serratia proteamaculans 568] Length = 138 Score = 159 bits (402), Expect = 2e-37, Method: Composition-based stats. Identities = 38/141 (26%), Positives = 64/141 (45%), Gaps = 13/141 (9%) Query: 21 LAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRK 80 AVQALY + ++ ++ + E VD+ +FR ++ GV Sbjct: 11 ECAVQALYSWQLSKNDIADVEHQFLS-----------EQDVKDVDIVYFRELLSGVAVNA 59 Query: 81 QHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYG 140 +D L++ L+ + L + ++LR + EL VP +V I+E + +A F Sbjct: 60 GLLDSLMAPVLSRQ--LEELGQVERAVLRIALYELKMREDVPYKVAINEAIELAKTFGAE 117 Query: 141 DEPKFINAVLDKVSRKEEIKR 161 D KF+N VLDKV+ K+ Sbjct: 118 DSHKFVNGVLDKVAPSIRKKK 138 >gi|226329105|ref|ZP_03804623.1| hypothetical protein PROPEN_03008 [Proteus penneri ATCC 35198] gi|225202291|gb|EEG84645.1| hypothetical protein PROPEN_03008 [Proteus penneri ATCC 35198] Length = 137 Score = 159 bits (402), Expect = 2e-37, Method: Composition-based stats. Identities = 38/140 (27%), Positives = 61/140 (43%), Gaps = 13/140 (9%) Query: 21 LAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRK 80 AVQA+Y + G ++ E+ + E VD+ +FR ++ GV Sbjct: 11 ECAVQAIYSWQLSGNDIADVELEFLS-----------EQDTQGVDIAYFRELLVGVAINA 59 Query: 81 QHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYG 140 +D + L+ + L + +ILR + EL VP +V I+E + +A F Sbjct: 60 TRLDKAMEPYLSRQ--LEELGQVEKAILRLAMFELSFREDVPYKVAINEAIELAKVFGAD 117 Query: 141 DEPKFINAVLDKVSRKEEIK 160 D KF+N VLDK + K Sbjct: 118 DSHKFVNGVLDKAAPTVRKK 137 >gi|254440807|ref|ZP_05054300.1| transcription antitermination factor NusB [Octadecabacter antarcticus 307] gi|198250885|gb|EDY75200.1| transcription antitermination factor NusB [Octadecabacter antarcticus 307] Length = 146 Score = 159 bits (402), Expect = 2e-37, Method: Composition-based stats. Identities = 50/144 (34%), Positives = 81/144 (56%), Gaps = 5/144 (3%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 + +RL AVQAL+Q++ S + E+E +RF A E + D+ FR+++ Sbjct: 2 KSASRLYAVQALFQMEHSNQSIESVTREFENHRFGAIYEGNE---MAEGDVALFRILVET 58 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135 ++ + ID + L KW +R+D L ++ RA +EL+ P V I+EYV +A Sbjct: 59 AVNEQSKIDQMTDRALVAKWPLARIDPTLRALFRAAGVELLGR-DTPPRVAITEYVDVAK 117 Query: 136 DFFY-GDEPKFINAVLDKVSRKEE 158 FF G+EPKF+NAVLD ++R+ + Sbjct: 118 AFFDGGEEPKFVNAVLDHMARQAK 141 >gi|149916259|ref|ZP_01904780.1| transcription antitermination factor NusB [Roseobacter sp. AzwK-3b] gi|149809919|gb|EDM69770.1| transcription antitermination factor NusB [Roseobacter sp. AzwK-3b] Length = 168 Score = 158 bits (401), Expect = 2e-37, Method: Composition-based stats. Identities = 47/160 (29%), Positives = 79/160 (49%), Gaps = 5/160 (3%) Query: 2 TIQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVY 61 T + R AR AVQAL+Q+++ + +I E+E +RF A + E Sbjct: 11 TTSAVPSGNQRRKMRSAARFYAVQALFQMEVSQQTVDAVIREFEDHRFGAHYD---EGDM 67 Query: 62 LHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSV 121 + D F ++ ++ + ID + L KW +R+D L ++ RA E+ + Sbjct: 68 VEGDPVLFGQLMRDAVNWQASIDQMTDRALVAKWPIARIDPTLRALFRAAGAEMTQS-DT 126 Query: 122 PVEVIISEYVCIAHDFF-YGDEPKFINAVLDKVSRKEEIK 160 P +V+I E+V IA F+ G E F+NAVLD ++R+ + Sbjct: 127 PPKVVIMEFVDIAKSFYPEGKESSFVNAVLDHMAREARPE 166 >gi|209363834|ref|YP_001423988.2| transcription antitermination protein NusB [Coxiella burnetii Dugway 5J108-111] gi|207081767|gb|ABS77377.2| N utilization substance protein B [Coxiella burnetii Dugway 5J108-111] Length = 179 Score = 158 bits (401), Expect = 2e-37, Method: Composition-based stats. Identities = 42/153 (27%), Positives = 78/153 (50%), Gaps = 13/153 (8%) Query: 4 QDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLH 63 ++N+++L ++ R AR A+QALYQ +IS++ +DT Sbjct: 35 KNNRRNLMINKTRHNARRYALQALYQWFFCETKPDALISQFMEEHDLSDT---------- 84 Query: 64 VDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPV 123 D+ +F+ ++ G + ID L+++ L K S L+ + S+LR + EL+ VP Sbjct: 85 -DVAYFKEVVTGTIQHVAIIDELMTAHLDRK--ISALNPVELSVLRLSIYELLHRKEVPY 141 Query: 124 EVIISEYVCIAHDFFYGDEPKFINAVLDKVSRK 156 +V+I E + + +F K++NA+LD +S + Sbjct: 142 KVVIDEALELVKEFGAEAGHKYVNAILDVLSSE 174 >gi|302338941|ref|YP_003804147.1| NusB antitermination factor [Spirochaeta smaragdinae DSM 11293] gi|301636126|gb|ADK81553.1| NusB antitermination factor [Spirochaeta smaragdinae DSM 11293] Length = 140 Score = 158 bits (401), Expect = 2e-37, Method: Composition-based stats. Identities = 45/143 (31%), Positives = 70/143 (48%), Gaps = 8/143 (5%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 R AR+ A QA+Y + E++ +++ +LD E+ + R+++ G Sbjct: 4 RRKARILAFQAIYSWEFHKPLLAELL-QFDWLEEERKAKLDTETWL------FARLLVQG 56 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135 ++ ID I + L E W FSRL + +ILR EL+ VP V I E V +A Sbjct: 57 TIENCDTIDHRIQNRL-EHWDFSRLSKVDLAILRLSTYELLFQQDVPASVAIDEAVDLAK 115 Query: 136 DFFYGDEPKFINAVLDKVSRKEE 158 DF D +FIN VLD + ++ E Sbjct: 116 DFGGDDSYRFINGVLDSIRKERE 138 >gi|238783631|ref|ZP_04627652.1| N utilization substance protein B [Yersinia bercovieri ATCC 43970] gi|238715509|gb|EEQ07500.1| N utilization substance protein B [Yersinia bercovieri ATCC 43970] Length = 138 Score = 158 bits (401), Expect = 2e-37, Method: Composition-based stats. Identities = 37/141 (26%), Positives = 66/141 (46%), Gaps = 13/141 (9%) Query: 21 LAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRK 80 AVQALY + ++ ++ + + D VD+ +FR ++ GV Sbjct: 11 ECAVQALYSWQLSKNDIADVELQFLSEQDVKD-----------VDIAYFRELLSGVAVNA 59 Query: 81 QHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYG 140 +D L++ L+ + L + ++LR + EL + VP +V I+E + +A F Sbjct: 60 ASLDALMAPVLSRQ--LEELGQVERAVLRIALFELSKREDVPYKVAINEAIELAKTFGAE 117 Query: 141 DEPKFINAVLDKVSRKEEIKR 161 D KF+N VLDK++ K+ Sbjct: 118 DSHKFVNGVLDKLAPTVRKKK 138 >gi|197283996|ref|YP_002149868.1| transcription antitermination protein NusB [Proteus mirabilis HI4320] gi|227358135|ref|ZP_03842476.1| N utilization substance protein B [Proteus mirabilis ATCC 29906] gi|238693150|sp|B4EU20|NUSB_PROMH RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|194681483|emb|CAR40329.1| N utilization substance protein B [Proteus mirabilis HI4320] gi|227161471|gb|EEI46508.1| N utilization substance protein B [Proteus mirabilis ATCC 29906] Length = 137 Score = 158 bits (401), Expect = 2e-37, Method: Composition-based stats. Identities = 38/140 (27%), Positives = 61/140 (43%), Gaps = 13/140 (9%) Query: 21 LAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRK 80 AVQA+Y + G ++ E+ + E VD+ +FR ++ GV Sbjct: 11 ECAVQAIYSWQLSGNDIADVELEFLS-----------EQDTQGVDIAYFRELLVGVAINA 59 Query: 81 QHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYG 140 +D + L+ + L + +ILR + EL VP +V I+E + +A F Sbjct: 60 ARLDKAMEPYLSRQ--LEELGQVEKAILRLAMFELSFREDVPYKVAINEAIELAKVFGAD 117 Query: 141 DEPKFINAVLDKVSRKEEIK 160 D KF+N VLDK + K Sbjct: 118 DSHKFVNGVLDKAAPTVRKK 137 >gi|260596785|ref|YP_003209356.1| transcription antitermination protein NusB [Cronobacter turicensis z3032] gi|260215962|emb|CBA28587.1| N utilization substance protein B homolog [Cronobacter turicensis z3032] Length = 139 Score = 158 bits (401), Expect = 2e-37, Method: Composition-based stats. Identities = 36/134 (26%), Positives = 61/134 (45%), Gaps = 13/134 (9%) Query: 21 LAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRK 80 AVQALY + ++ ++ E VD+ +FR ++ GV Sbjct: 11 ECAVQALYSWQLSHNDIADVEYQFLA-----------EQDVKDVDVMYFRELLSGVATNS 59 Query: 81 QHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYG 140 ++D L+ L+ + L + ++LR + EL + VP +V I+E + +A F Sbjct: 60 GYLDGLMKPYLSRQ--LEELGQVEKAVLRIALFELSKRDDVPYKVAINEAIELAKVFGAE 117 Query: 141 DEPKFINAVLDKVS 154 D KF+N VLDK + Sbjct: 118 DSHKFVNGVLDKAA 131 >gi|116748821|ref|YP_845508.1| NusB antitermination factor [Syntrophobacter fumaroxidans MPOB] gi|166215725|sp|A0LI21|NUSB_SYNFM RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|116697885|gb|ABK17073.1| NusB antitermination factor [Syntrophobacter fumaroxidans MPOB] Length = 151 Score = 158 bits (401), Expect = 2e-37, Method: Composition-based stats. Identities = 39/146 (26%), Positives = 67/146 (45%), Gaps = 6/146 (4%) Query: 15 RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74 RR +R A+Q LYQ+++ E + Y + D + + I+ Sbjct: 3 RRRRSREMALQVLYQMEMAVLPPEEALGLYYQL-----FDDDEKHRVPAEVRPFAEEIVR 57 Query: 75 GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134 GV + ID +I+S +E W +R+ ++ +ILR V E++ C +P +V I+E + + Sbjct: 58 GVSLHRARIDEMITSA-SEHWRLARMSLVDRNILRIAVFEMLFCFDIPPKVSINEAIDLG 116 Query: 135 HDFFYGDEPKFINAVLDKVSRKEEIK 160 F D FIN +LD + E Sbjct: 117 KTFGSPDSGAFINGILDHILPLLEAN 142 >gi|311693386|gb|ADP96259.1| transcription antitermination protein NusB [marine bacterium HP15] Length = 158 Score = 158 bits (401), Expect = 2e-37, Method: Composition-based stats. Identities = 43/161 (26%), Positives = 75/161 (46%), Gaps = 13/161 (8%) Query: 2 TIQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVY 61 + Q + R AR A+Q LYQ + ++I +E+ V++ Sbjct: 8 SPQPAPSGQPKAGDRRRARALAMQGLYQRHFSKTAISDIEAEFM-----------VDNDM 56 Query: 62 LHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSV 121 VDL +FR ++ GV + +D LI L +D + +I+R G EL V Sbjct: 57 SKVDLLYFRDLLRGVHREQGELDKLIEPFLDR--PIKEVDPVELAIVRLGAYELKHRLDV 114 Query: 122 PVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRS 162 P +V+I+E + +A F + KF+N++LDK+S + + + Sbjct: 115 PYKVVINEGIEMAKRFGGTEGHKFVNSILDKLSGRLRLAET 155 >gi|270263549|ref|ZP_06191818.1| putative N-utilization protein B [Serratia odorifera 4Rx13] gi|270042433|gb|EFA15528.1| putative N-utilization protein B [Serratia odorifera 4Rx13] Length = 140 Score = 158 bits (400), Expect = 2e-37, Method: Composition-based stats. Identities = 38/142 (26%), Positives = 63/142 (44%), Gaps = 13/142 (9%) Query: 21 LAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRK 80 AVQALY + ++ ++ T + D VD+ +FR ++ GV Sbjct: 11 ECAVQALYSWQLSKNDIADVEHQFLTEQDVKD-----------VDIAYFRELLSGVAVNA 59 Query: 81 QHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYG 140 +D L++ L+ + L + ++LR + EL VP +V I+E + +A F Sbjct: 60 GLLDGLMAPFLSRQ--LEELGQVERAVLRIALFELKMREDVPYKVAINEAIELAKTFGAE 117 Query: 141 DEPKFINAVLDKVSRKEEIKRS 162 D KF+N VLDK + K Sbjct: 118 DSHKFVNGVLDKAAPSIRKKNK 139 >gi|329850578|ref|ZP_08265423.1| transcription antitermination factor NusB [Asticcacaulis biprosthecum C19] gi|328840893|gb|EGF90464.1| transcription antitermination factor NusB [Asticcacaulis biprosthecum C19] Length = 173 Score = 158 bits (400), Expect = 2e-37, Method: Composition-based stats. Identities = 53/143 (37%), Positives = 75/143 (52%), Gaps = 3/143 (2%) Query: 14 HRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVII 73 R +ARL VQALYQ++I G ++ E+ +RF D E + D +F Sbjct: 31 RARTVARLVLVQALYQMEITGTGVETVVREFADHRFDTDLEGEP---LAQADEAFFGEGA 87 Query: 74 HGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCI 133 V+ + ID LI+ L W RLD + +ILRAG EL + +EV+I+EYV I Sbjct: 88 RAVVREQGVIDPLITHRLASGWRLERLDTTVRAILRAGTWELKFRPDIGLEVVINEYVEI 147 Query: 134 AHDFFYGDEPKFINAVLDKVSRK 156 A FF E +F+NA LD V++ Sbjct: 148 ARAFFGETEARFVNAALDGVAKD 170 >gi|114570081|ref|YP_756761.1| transcription antitermination protein NusB [Maricaulis maris MCS10] gi|119390782|sp|Q0APG4|NUSB_MARMM RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|114340543|gb|ABI65823.1| NusB antitermination factor [Maricaulis maris MCS10] Length = 160 Score = 158 bits (400), Expect = 2e-37, Method: Composition-based stats. Identities = 52/133 (39%), Positives = 80/133 (60%), Gaps = 3/133 (2%) Query: 23 AVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQH 82 AVQALYQ++I G + +I E+ +RF A E ++ D ++F ++ GV++R+ Sbjct: 24 AVQALYQMEIGGLGASAVIREFREHRFGACGEAPE---FVEADEDFFESLVAGVVERQAD 80 Query: 83 IDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDE 142 +D + + L +KW RLD + +ILR G EL+ VP V+I EY+ +A+ FF G E Sbjct: 81 VDPAMDALLADKWRLERLDATVRAILRVGGFELLYRKDVPARVVIDEYIEVANAFFEGAE 140 Query: 143 PKFINAVLDKVSR 155 PKFINA D+ +R Sbjct: 141 PKFINAAFDRCAR 153 >gi|109897640|ref|YP_660895.1| NusB antitermination factor [Pseudoalteromonas atlantica T6c] gi|119390797|sp|Q15W97|NUSB_PSEA6 RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|109699921|gb|ABG39841.1| NusB antitermination factor [Pseudoalteromonas atlantica T6c] Length = 140 Score = 158 bits (400), Expect = 2e-37, Method: Composition-based stats. Identities = 44/146 (30%), Positives = 65/146 (44%), Gaps = 14/146 (9%) Query: 10 LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF 69 +K + RR AR AVQA+Y + +I T D VD E+F Sbjct: 1 MKPAARR-KARELAVQAVYSWQMSKNPLDQIELSIVTSNNMQD-----------VDTEYF 48 Query: 70 RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISE 129 ++ V+ R +D I L LD + +ILR EL+E VP +V+I+E Sbjct: 49 LELLRAVVRRTAELDAKIKPYLGR--LPEELDPVENAILRLATYELVERIDVPYKVVINE 106 Query: 130 YVCIAHDFFYGDEPKFINAVLDKVSR 155 + +A F + KF+N VLDK + Sbjct: 107 AIELAKSFGAEESHKFVNGVLDKAIK 132 >gi|311069033|ref|YP_003973956.1| transcription antitermination protein NusB [Bacillus atrophaeus 1942] gi|310869550|gb|ADP33025.1| transcription antitermination protein NusB [Bacillus atrophaeus 1942] Length = 131 Score = 158 bits (400), Expect = 3e-37, Method: Composition-based stats. Identities = 38/144 (26%), Positives = 65/144 (45%), Gaps = 16/144 (11%) Query: 15 RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74 +R AR A+QAL+QID+ + E I + +F +++ Sbjct: 2 KRRTAREKALQALFQIDVSDIAPNEAIEHALDDQKTD---------------PFFEELVY 46 Query: 75 GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134 GV+D + +D +IS L W R+ + ++LR V E++ +PV V ++E + +A Sbjct: 47 GVIDHQVQLDEMISKHLV-NWKLDRIANVDRAVLRLAVYEMVYVEDIPVNVSMNEAIELA 105 Query: 135 HDFFYGDEPKFINAVLDKVSRKEE 158 F KF+N VL + E Sbjct: 106 KRFGDDKATKFVNGVLSNIKSDIE 129 >gi|51892987|ref|YP_075678.1| transcription termination factor [Symbiobacterium thermophilum IAM 14863] gi|81610502|sp|Q67NA9|NUSB_SYMTH RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|51856676|dbj|BAD40834.1| transcription termination factor [Symbiobacterium thermophilum IAM 14863] Length = 153 Score = 158 bits (400), Expect = 3e-37, Method: Composition-based stats. Identities = 42/155 (27%), Positives = 70/155 (45%), Gaps = 5/155 (3%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 R AR A+QAL+Q+DI G +++ T D D E+ R ++ G Sbjct: 3 RRKARELALQALFQMDIAGTDPDTAVAQALTRETEPDWAPD---RLEEESAEFARRLVRG 59 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135 ++ D LI+ W R+ + +ILR V E++ VP V ++E V +A Sbjct: 60 AWQHREESDRLIAQY-ARGWRVERMAAVDRAILRMAVYEIVHSEDVPDSVAVAEAVELAK 118 Query: 136 DFFYGDEPKFINAVLDKVSRKEEIKRSGCVSAITQ 170 F D +F+N +L V R + +G A+++ Sbjct: 119 TFSTADSSRFVNGILGSVIRGMK-GAAGADEAVSR 152 >gi|253687422|ref|YP_003016612.1| NusB antitermination factor [Pectobacterium carotovorum subsp. carotovorum PC1] gi|259514866|sp|C6DB34|NUSB_PECCP RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|251754000|gb|ACT12076.1| NusB antitermination factor [Pectobacterium carotovorum subsp. carotovorum PC1] Length = 139 Score = 158 bits (400), Expect = 3e-37, Method: Composition-based stats. Identities = 37/134 (27%), Positives = 65/134 (48%), Gaps = 13/134 (9%) Query: 21 LAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRK 80 AVQALY + ++ ++ + + D VD+ +FR ++ GV + Sbjct: 11 ECAVQALYSWQLSKNDIADVEHQFLSEQDVKD-----------VDITYFRELLAGVATQA 59 Query: 81 QHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYG 140 + +D L++ L+ + L + +ILR + EL + VP +V I+E + +A F Sbjct: 60 EKLDQLMAPFLSRQ--IEELGQVEKAILRLAMFELSKREDVPYKVAINEAIELAKVFGAE 117 Query: 141 DEPKFINAVLDKVS 154 D KF+N VLDK + Sbjct: 118 DSHKFVNGVLDKAA 131 >gi|238752770|ref|ZP_04614239.1| N utilization substance protein B [Yersinia rohdei ATCC 43380] gi|238709028|gb|EEQ01277.1| N utilization substance protein B [Yersinia rohdei ATCC 43380] Length = 138 Score = 158 bits (400), Expect = 3e-37, Method: Composition-based stats. Identities = 37/141 (26%), Positives = 65/141 (46%), Gaps = 13/141 (9%) Query: 21 LAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRK 80 AVQALY + ++ ++ + E VD+ +FR ++ GV Sbjct: 11 ECAVQALYSWQLSKNDIADVELQFLS-----------EQDVKDVDISYFRELLSGVAVNA 59 Query: 81 QHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYG 140 +D L++ L+ + L + ++LR + EL + VP +V I+E + +A F Sbjct: 60 ASLDALMAPVLSRQ--LEELGQVERAVLRIALFELSKRDDVPYKVAINEAIELAKTFGAA 117 Query: 141 DEPKFINAVLDKVSRKEEIKR 161 D KF+N VLDK++ K+ Sbjct: 118 DSHKFVNGVLDKLAPTIRKKK 138 >gi|329298306|ref|ZP_08255642.1| transcription antitermination protein NusB [Plautia stali symbiont] Length = 139 Score = 158 bits (400), Expect = 3e-37, Method: Composition-based stats. Identities = 37/142 (26%), Positives = 62/142 (43%), Gaps = 13/142 (9%) Query: 21 LAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRK 80 AVQALY + ++ ++ E VD+ +FR ++ GV Sbjct: 11 ECAVQALYSWQLSNNDIADVEYQFLA-----------EQDVKDVDISYFRELLAGVATNS 59 Query: 81 QHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYG 140 +D L+ L+ + L + +ILR + EL + VP +V I+E + +A F Sbjct: 60 AFLDGLMKPYLSRQ--LEELGQLEKAILRISLYELSKRDDVPYKVAINEGIELAKVFGAE 117 Query: 141 DEPKFINAVLDKVSRKEEIKRS 162 D KF+N VLDK + + + Sbjct: 118 DSHKFVNGVLDKAAPQIRPNKK 139 >gi|283784235|ref|YP_003364100.1| N utilization substance protein B [Citrobacter rodentium ICC168] gi|282947689|emb|CBG87244.1| N utilization substance protein B [Citrobacter rodentium ICC168] Length = 139 Score = 157 bits (399), Expect = 3e-37, Method: Composition-based stats. Identities = 36/134 (26%), Positives = 60/134 (44%), Gaps = 13/134 (9%) Query: 21 LAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRK 80 AVQALY + ++ ++ E VD+ +FR ++ GV Sbjct: 11 ECAVQALYSWQLSQNDIADVEYQFLA-----------EQDVKDVDVMYFRELLSGVATNS 59 Query: 81 QHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYG 140 ++D L+ L+ L + ++LR + EL + VP +V I+E + +A F Sbjct: 60 AYLDGLMKPYLSR--LLEELGQVEKAVLRIALFELSKRSDVPYKVAINEAIELAKTFGAE 117 Query: 141 DEPKFINAVLDKVS 154 D KF+N VLDK + Sbjct: 118 DSHKFVNGVLDKAA 131 >gi|16763798|ref|NP_459413.1| transcription antitermination protein NusB [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|56414427|ref|YP_151502.1| transcription antitermination protein NusB [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|62179029|ref|YP_215446.1| transcription antitermination protein NusB [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|157146968|ref|YP_001454287.1| transcription antitermination protein NusB [Citrobacter koseri ATCC BAA-895] gi|161504397|ref|YP_001571509.1| transcription antitermination protein NusB [Salmonella enterica subsp. arizonae serovar 62:z4,z23:-- str. RSK2980] gi|161615394|ref|YP_001589359.1| transcription antitermination protein NusB [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|167551771|ref|ZP_02345524.1| transcription termination/antitermination factor NusB [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|167992268|ref|ZP_02573366.1| transcription termination/antitermination factor NusB [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|168232391|ref|ZP_02657449.1| transcription termination/antitermination factor NusB [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|168237531|ref|ZP_02662589.1| transcription termination/antitermination factor NusB [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|168240241|ref|ZP_02665173.1| transcription termination/antitermination factor NusB [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|168261149|ref|ZP_02683122.1| transcription termination/antitermination factor NusB [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|168465508|ref|ZP_02699390.1| transcription termination/antitermination factor NusB [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|168818971|ref|ZP_02830971.1| transcription termination/antitermination factor NusB [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|194445003|ref|YP_002039660.1| transcription antitermination protein NusB [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194449230|ref|YP_002044453.1| transcription antitermination protein NusB [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|194470791|ref|ZP_03076775.1| transcription termination/antitermination factor NusB [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|194735835|ref|YP_002113451.1| transcription antitermination protein NusB [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|197249816|ref|YP_002145400.1| transcription antitermination protein NusB [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|197265909|ref|ZP_03165983.1| transcription termination/antitermination factor NusB [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|197363347|ref|YP_002142984.1| transcription antitermination protein NusB [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|198243030|ref|YP_002214372.1| transcription antitermination protein NusB [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|200390221|ref|ZP_03216832.1| transcription termination/antitermination factor NusB [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|204926733|ref|ZP_03217935.1| transcription termination/antitermination factor NusB [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|205351729|ref|YP_002225530.1| transcription antitermination protein NusB [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|207855899|ref|YP_002242550.1| transcription antitermination protein NusB [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|224582256|ref|YP_002636054.1| transcription antitermination protein NusB [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|237730392|ref|ZP_04560873.1| transcription antitermination protein NusB [Citrobacter sp. 30_2] gi|238911449|ref|ZP_04655286.1| transcription antitermination protein NusB [Salmonella enterica subsp. enterica serovar Tennessee str. CDC07-0191] gi|283834267|ref|ZP_06354008.1| transcription antitermination factor NusB [Citrobacter youngae ATCC 29220] gi|22095957|sp|Q8ZRD3|NUSB_SALTY RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|75484594|sp|Q57SE6|NUSB_SALCH RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|81599425|sp|Q5PFS9|NUSB_SALPA RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|166215680|sp|A8AK38|NUSB_CITK8 RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|189035901|sp|A9MM45|NUSB_SALAR RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|189035902|sp|A9MX13|NUSB_SALPB RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|238689944|sp|B5BDB4|NUSB_SALPK RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|238689999|sp|B5EXF9|NUSB_SALA4 RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|238690220|sp|B4T8Q9|NUSB_SALHS RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|238690323|sp|B5FKS3|NUSB_SALDC RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|238690385|sp|B5QTG6|NUSB_SALEP RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|238690477|sp|B5R6R9|NUSB_SALG2 RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|238690694|sp|B4TM98|NUSB_SALSV RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|238693540|sp|B4SWR0|NUSB_SALNS RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|254772653|sp|C0Q7U3|NUSB_SALPC RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|16418923|gb|AAL19372.1| transcription termination; L factor [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|56128684|gb|AAV78190.1| N utilization substance protein B [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|62126662|gb|AAX64365.1| transcription termination; L factor [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|157084173|gb|ABV13851.1| hypothetical protein CKO_02745 [Citrobacter koseri ATCC BAA-895] gi|160865744|gb|ABX22367.1| hypothetical protein SARI_02508 [Salmonella enterica subsp. arizonae serovar 62:z4,z23:--] gi|161364758|gb|ABX68526.1| hypothetical protein SPAB_03165 [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|194403666|gb|ACF63888.1| transcription termination/antitermination factor NusB [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194407534|gb|ACF67753.1| transcription termination/antitermination factor NusB [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|194457155|gb|EDX45994.1| transcription termination/antitermination factor NusB [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|194711337|gb|ACF90558.1| transcription termination/antitermination factor NusB [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|195631893|gb|EDX50413.1| transcription termination/antitermination factor NusB [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|197094824|emb|CAR60357.1| N utilization substance protein B [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|197213519|gb|ACH50916.1| transcription termination/antitermination factor NusB [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|197244164|gb|EDY26784.1| transcription termination/antitermination factor NusB [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|197289580|gb|EDY28943.1| transcription termination/antitermination factor NusB [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|197937546|gb|ACH74879.1| transcription termination/antitermination factor NusB [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|199602666|gb|EDZ01212.1| transcription termination/antitermination factor NusB [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|204323398|gb|EDZ08593.1| transcription termination/antitermination factor NusB [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|205271510|emb|CAR36328.1| N utilization substance protein B [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|205323516|gb|EDZ11355.1| transcription termination/antitermination factor NusB [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|205329474|gb|EDZ16238.1| transcription termination/antitermination factor NusB [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|205333370|gb|EDZ20134.1| transcription termination/antitermination factor NusB [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|205340408|gb|EDZ27172.1| transcription termination/antitermination factor NusB [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|205343985|gb|EDZ30749.1| transcription termination/antitermination factor NusB [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|205349770|gb|EDZ36401.1| transcription termination/antitermination factor NusB [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|206707702|emb|CAR31986.1| N utilization substance protein B [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|224466783|gb|ACN44613.1| transcription antitermination protein NusB [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|226905931|gb|EEH91849.1| transcription antitermination protein NusB [Citrobacter sp. 30_2] gi|261245701|emb|CBG23497.1| N utilization substance protein B [Salmonella enterica subsp. enterica serovar Typhimurium str. D23580] gi|267992129|gb|ACY87014.1| transcription antitermination protein NusB [Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S] gi|291069789|gb|EFE07898.1| transcription antitermination factor NusB [Citrobacter youngae ATCC 29220] gi|301157029|emb|CBW16512.1| N utilization substance protein B [Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344] gi|312911451|dbj|BAJ35425.1| transcription antitermination protein NusB [Salmonella enterica subsp. enterica serovar Typhimurium str. T000240] gi|320084694|emb|CBY94485.1| N utilization substance protein B homolog Protein nusB [Salmonella enterica subsp. enterica serovar Weltevreden str. 2007-60-3289-1] gi|321225145|gb|EFX50206.1| Transcription termination protein NusB [Salmonella enterica subsp. enterica serovar Typhimurium str. TN061786] gi|322614698|gb|EFY11627.1| transcription antitermination protein NusB [Salmonella enterica subsp. enterica serovar Montevideo str. 315996572] gi|322618804|gb|EFY15692.1| transcription antitermination protein NusB [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-1] gi|322623511|gb|EFY20350.1| transcription antitermination protein NusB [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-3] gi|322629191|gb|EFY25970.1| transcription antitermination protein NusB [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-4] gi|322631911|gb|EFY28665.1| transcription antitermination protein NusB [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-1] gi|322637352|gb|EFY34054.1| transcription antitermination protein NusB [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-2] gi|322642037|gb|EFY38647.1| transcription antitermination protein NusB [Salmonella enterica subsp. enterica serovar Montevideo str. 531954] gi|322647856|gb|EFY44331.1| transcription antitermination protein NusB [Salmonella enterica subsp. enterica serovar Montevideo str. NC_MB110209-0054] gi|322652534|gb|EFY48888.1| transcription antitermination protein NusB [Salmonella enterica subsp. enterica serovar Montevideo str. OH_2009072675] gi|322653304|gb|EFY49637.1| transcription antitermination protein NusB [Salmonella enterica subsp. enterica serovar Montevideo str. CASC_09SCPH15965] gi|322660547|gb|EFY56783.1| transcription antitermination protein NusB [Salmonella enterica subsp. enterica serovar Montevideo str. 19N] gi|322664699|gb|EFY60892.1| transcription antitermination protein NusB [Salmonella enterica subsp. enterica serovar Montevideo str. 81038-01] gi|322669248|gb|EFY65398.1| transcription antitermination protein NusB [Salmonella enterica subsp. enterica serovar Montevideo str. MD_MDA09249507] gi|322670793|gb|EFY66926.1| transcription antitermination protein NusB [Salmonella enterica subsp. enterica serovar Montevideo str. 414877] gi|322678968|gb|EFY75023.1| transcription antitermination protein NusB [Salmonella enterica subsp. enterica serovar Montevideo str. 366867] gi|322681996|gb|EFY78021.1| transcription antitermination protein NusB [Salmonella enterica subsp. enterica serovar Montevideo str. 413180] gi|322685175|gb|EFY81172.1| transcription antitermination protein NusB [Salmonella enterica subsp. enterica serovar Montevideo str. 446600] gi|322713490|gb|EFZ05061.1| transcription antitermination protein NusB [Salmonella enterica subsp. enterica serovar Choleraesuis str. A50] gi|323128737|gb|ADX16167.1| transcription antitermination protein NusB [Salmonella enterica subsp. enterica serovar Typhimurium str. 4/74] gi|323194477|gb|EFZ79672.1| transcription antitermination protein NusB [Salmonella enterica subsp. enterica serovar Montevideo str. 609458-1] gi|323196986|gb|EFZ82128.1| transcription antitermination protein NusB [Salmonella enterica subsp. enterica serovar Montevideo str. 556150-1] gi|323203971|gb|EFZ88988.1| transcription antitermination protein NusB [Salmonella enterica subsp. enterica serovar Montevideo str. 609460] gi|323206944|gb|EFZ91897.1| transcription antitermination protein NusB [Salmonella enterica subsp. enterica serovar Montevideo str. 507440-20] gi|323210838|gb|EFZ95710.1| transcription antitermination protein NusB [Salmonella enterica subsp. enterica serovar Montevideo str. 556152] gi|323214529|gb|EFZ99280.1| transcription antitermination protein NusB [Salmonella enterica subsp. enterica serovar Montevideo str. MB101509-0077] gi|323223086|gb|EGA07429.1| transcription antitermination protein NusB [Salmonella enterica subsp. enterica serovar Montevideo str. MB102109-0047] gi|323227035|gb|EGA11216.1| transcription antitermination protein NusB [Salmonella enterica subsp. enterica serovar Montevideo str. MB110209-0055] gi|323230147|gb|EGA14267.1| transcription antitermination protein NusB [Salmonella enterica subsp. enterica serovar Montevideo str. MB111609-0052] gi|323233885|gb|EGA17974.1| transcription antitermination protein NusB [Salmonella enterica subsp. enterica serovar Montevideo str. 2009083312] gi|323238421|gb|EGA22479.1| transcription antitermination protein NusB [Salmonella enterica subsp. enterica serovar Montevideo str. 2009085258] gi|323244109|gb|EGA28118.1| transcription antitermination protein NusB [Salmonella enterica subsp. enterica serovar Montevideo str. 315731156] gi|323246269|gb|EGA30252.1| transcription antitermination protein NusB [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2009159199] gi|323251895|gb|EGA35758.1| transcription antitermination protein NusB [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008282] gi|323257892|gb|EGA41571.1| transcription antitermination protein NusB [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008283] gi|323261095|gb|EGA44687.1| transcription antitermination protein NusB [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008284] gi|323264975|gb|EGA48474.1| transcription antitermination protein NusB [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008285] gi|323272538|gb|EGA55945.1| transcription antitermination protein NusB [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008287] gi|326622120|gb|EGE28465.1| transcription antitermination protein NusB [Salmonella enterica subsp. enterica serovar Dublin str. 3246] gi|326626764|gb|EGE33107.1| transcription antitermination protein NusB [Salmonella enterica subsp. enterica serovar Gallinarum str. 9] gi|332987366|gb|AEF06349.1| transcription antitermination protein NusB [Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1] Length = 139 Score = 157 bits (399), Expect = 3e-37, Method: Composition-based stats. Identities = 36/134 (26%), Positives = 60/134 (44%), Gaps = 13/134 (9%) Query: 21 LAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRK 80 AVQALY + ++ ++ E VD+ +FR ++ GV Sbjct: 11 ECAVQALYSWQLSQNDIADVEYQFLA-----------EQDVKDVDVLYFRELLSGVATNS 59 Query: 81 QHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYG 140 ++D L+ L+ L + ++LR + EL + VP +V I+E + +A F Sbjct: 60 AYLDGLMKPYLSR--LLEELGQVEKAVLRIALFELSKRSDVPYKVAINEAIELAKTFGAE 117 Query: 141 DEPKFINAVLDKVS 154 D KF+N VLDK + Sbjct: 118 DSHKFVNGVLDKAA 131 >gi|323702771|ref|ZP_08114431.1| NusB antitermination factor [Desulfotomaculum nigrificans DSM 574] gi|323532288|gb|EGB22167.1| NusB antitermination factor [Desulfotomaculum nigrificans DSM 574] Length = 144 Score = 157 bits (399), Expect = 3e-37, Method: Composition-based stats. Identities = 42/152 (27%), Positives = 71/152 (46%), Gaps = 13/152 (8%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 R AR A+QAL+QID+ + EL E+ R ++ G Sbjct: 3 RRQARETALQALFQIDVGKIEPEFALKNTAEEFGAGSQEL-----------EFARQLVTG 51 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135 ++ ID +IS ++++W SR+ + +I+R + E++ +P V I+E V +A Sbjct: 52 TLEHINEIDEIISR-VSKEWQLSRMANVDRNIMRLALYEMMFRDDIPGSVSINEAVELAK 110 Query: 136 DFFYGDEPKFINAVLDKV-SRKEEIKRSGCVS 166 F D KF+N +L KV + + E K + V Sbjct: 111 AFGGADSGKFVNGILGKVLASQAEFKAAVSVP 142 >gi|126733189|ref|ZP_01748936.1| putative N utilization substance protein B [Roseobacter sp. CCS2] gi|126716055|gb|EBA12919.1| putative N utilization substance protein B [Roseobacter sp. CCS2] Length = 159 Score = 157 bits (399), Expect = 3e-37, Method: Composition-based stats. Identities = 54/161 (33%), Positives = 86/161 (53%), Gaps = 9/161 (5%) Query: 1 MTIQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESV 60 MT+ +NKK + ARL AVQAL+Q++ G + ++ E+E +R A + E Sbjct: 1 MTLSNNKK----RKMKSAARLYAVQALFQMEASGQTVDQVTREFEDHRLGAVYD---EGE 53 Query: 61 YLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHS 120 D++ FR ++ +D + ID L L KW +R+D ++ RA EL Sbjct: 54 MTEGDVDTFRALMEKAVDDQAAIDQLTDRALVAKWPIARIDPTWRALFRAAGAELT-LQD 112 Query: 121 VPVEVIISEYVCIAHDFFYG-DEPKFINAVLDKVSRKEEIK 160 P +V+ISE+V +A F EPKF+NAVLD ++R+ + + Sbjct: 113 TPPKVVISEFVSVAEAFSADGKEPKFVNAVLDHMAREAQPE 153 >gi|146310545|ref|YP_001175619.1| transcription antitermination protein NusB [Enterobacter sp. 638] gi|166918808|sp|A4W788|NUSB_ENT38 RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|145317421|gb|ABP59568.1| NusB antitermination factor [Enterobacter sp. 638] Length = 139 Score = 157 bits (399), Expect = 3e-37, Method: Composition-based stats. Identities = 36/142 (25%), Positives = 62/142 (43%), Gaps = 13/142 (9%) Query: 21 LAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRK 80 AVQALY + ++ ++ E VD+ +FR ++ GV Sbjct: 11 ECAVQALYSWQLSQNDIADVEYQFLA-----------EQDVKDVDVLYFRELLSGVATNS 59 Query: 81 QHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYG 140 ++D L+ L+ L + ++LR + EL + VP +V I+E + +A F Sbjct: 60 AYLDGLMKPYLSR--LLEELGQVEKAVLRIALFELAKRDDVPYKVAINEAIELAKTFGAE 117 Query: 141 DEPKFINAVLDKVSRKEEIKRS 162 D KF+N VLDK + ++ Sbjct: 118 DSHKFVNGVLDKAAPAIRPRKK 139 >gi|71892016|ref|YP_277746.1| transcription antitermination protein NusB [Candidatus Blochmannia pennsylvanicus str. BPEN] gi|119372278|sp|Q493G9|NUSB_BLOPB RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|71796122|gb|AAZ40873.1| L factor [Candidatus Blochmannia pennsylvanicus str. BPEN] Length = 144 Score = 157 bits (399), Expect = 3e-37, Method: Composition-based stats. Identities = 38/145 (26%), Positives = 63/145 (43%), Gaps = 13/145 (8%) Query: 12 LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71 + R AR +QALY + EI T E ++ +F Sbjct: 2 KAISRRRARECTLQALYSWQVSKNDVKEIERYVVT-----------EQDIQDCNISYFHE 50 Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131 + GV+ + +D L+ L+ +L I S+LR + EL +C+ +P +V I+E + Sbjct: 51 LYIGVISCAEELDKLMIPHLSRN--LEKLGYIEHSVLRIALFELTKCNDIPYKVAINEAI 108 Query: 132 CIAHDFFYGDEPKFINAVLDKVSRK 156 + F KFIN VLDK++ + Sbjct: 109 ELVKIFGAEKSHKFINGVLDKIANQ 133 >gi|332307436|ref|YP_004435287.1| NusB antitermination factor [Glaciecola agarilytica 4H-3-7+YE-5] gi|332174765|gb|AEE24019.1| NusB antitermination factor [Glaciecola agarilytica 4H-3-7+YE-5] Length = 140 Score = 157 bits (399), Expect = 4e-37, Method: Composition-based stats. Identities = 43/146 (29%), Positives = 65/146 (44%), Gaps = 14/146 (9%) Query: 10 LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF 69 +K + RR AR AVQA+Y + ++ T D VD E+F Sbjct: 1 MKPAARR-KARELAVQAVYSWQMSKNPLDQVELSIVTSNNMQD-----------VDTEYF 48 Query: 70 RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISE 129 ++ V+ + +D I L LD + +ILR EL+E VP +V+I+E Sbjct: 49 LELLRAVVRKTAELDAKIKPYLGR--LPEELDPVENAILRLATYELVERIDVPYKVVINE 106 Query: 130 YVCIAHDFFYGDEPKFINAVLDKVSR 155 + +A F + KFIN VLDK + Sbjct: 107 AIELAKSFGAEESHKFINGVLDKAIK 132 >gi|227113444|ref|ZP_03827100.1| transcription antitermination protein NusB [Pectobacterium carotovorum subsp. brasiliensis PBR1692] Length = 139 Score = 157 bits (399), Expect = 4e-37, Method: Composition-based stats. Identities = 37/134 (27%), Positives = 65/134 (48%), Gaps = 13/134 (9%) Query: 21 LAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRK 80 AVQALY + ++ ++ + + D VD+ +FR ++ GV + Sbjct: 11 ECAVQALYSWQLSKNDIADVEHQFLSEQDVKD-----------VDITYFRELLAGVATQA 59 Query: 81 QHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYG 140 + +D L++ L+ + L + +ILR + EL + VP +V I+E + +A F Sbjct: 60 EKLDQLMAPFLSRQ--IEELGQVEKAILRLAMFELSKREDVPYKVAINEAIELAKIFGAE 117 Query: 141 DEPKFINAVLDKVS 154 D KF+N VLDK + Sbjct: 118 DSHKFVNGVLDKAA 131 >gi|15800145|ref|NP_286157.1| transcription antitermination protein NusB [Escherichia coli O157:H7 EDL933] gi|15829723|ref|NP_308496.1| transcription antitermination protein NusB [Escherichia coli O157:H7 str. Sakai] gi|16128401|ref|NP_414950.1| transcription antitermination protein [Escherichia coli str. K-12 substr. MG1655] gi|24111794|ref|NP_706304.1| transcription antitermination protein NusB [Shigella flexneri 2a str. 301] gi|26246422|ref|NP_752461.1| transcription antitermination protein NusB [Escherichia coli CFT073] gi|30061911|ref|NP_836082.1| transcription antitermination protein NusB [Shigella flexneri 2a str. 2457T] gi|74310985|ref|YP_309404.1| transcription antitermination protein NusB [Shigella sonnei Ss046] gi|82542904|ref|YP_406851.1| transcription antitermination protein NusB [Shigella boydii Sb227] gi|82775679|ref|YP_402026.1| transcription antitermination protein NusB [Shigella dysenteriae Sd197] gi|89107286|ref|AP_001066.1| transcription antitermination protein [Escherichia coli str. K-12 substr. W3110] gi|91209485|ref|YP_539471.1| transcription antitermination protein NusB [Escherichia coli UTI89] gi|110640677|ref|YP_668405.1| transcription antitermination protein NusB [Escherichia coli 536] gi|110804438|ref|YP_687958.1| transcription antitermination protein NusB [Shigella flexneri 5 str. 8401] gi|157154883|ref|YP_001461598.1| transcription antitermination protein NusB [Escherichia coli E24377A] gi|157159937|ref|YP_001457255.1| transcription antitermination protein NusB [Escherichia coli HS] gi|170021212|ref|YP_001726166.1| transcription antitermination protein NusB [Escherichia coli ATCC 8739] gi|170080002|ref|YP_001729322.1| transcription antitermination protein [Escherichia coli str. K-12 substr. DH10B] gi|170681155|ref|YP_001742553.1| transcription antitermination protein NusB [Escherichia coli SMS-3-5] gi|170767720|ref|ZP_02902173.1| transcription termination/antitermination factor NusB [Escherichia albertii TW07627] gi|187730987|ref|YP_001879125.1| transcription antitermination protein NusB [Shigella boydii CDC 3083-94] gi|187776230|ref|ZP_02801288.2| transcription termination/antitermination factor NusB [Escherichia coli O157:H7 str. EC4196] gi|188024918|ref|ZP_02774897.2| transcription termination/antitermination factor NusB [Escherichia coli O157:H7 str. EC4113] gi|188493154|ref|ZP_03000424.1| transcription termination/antitermination factor NusB [Escherichia coli 53638] gi|189010625|ref|ZP_02808286.2| transcription termination/antitermination factor NusB [Escherichia coli O157:H7 str. EC4076] gi|189402368|ref|ZP_02781962.2| transcription termination/antitermination factor NusB [Escherichia coli O157:H7 str. EC4401] gi|189403130|ref|ZP_02793371.2| transcription termination/antitermination factor NusB [Escherichia coli O157:H7 str. EC4486] gi|189404015|ref|ZP_02786626.2| transcription termination/antitermination factor NusB [Escherichia coli O157:H7 str. EC4501] gi|189404842|ref|ZP_02811267.2| transcription termination/antitermination factor NusB [Escherichia coli O157:H7 str. EC869] gi|189405926|ref|ZP_02825303.2| transcription termination/antitermination factor NusB [Escherichia coli O157:H7 str. EC508] gi|191166701|ref|ZP_03028528.1| transcription termination/antitermination factor NusB [Escherichia coli B7A] gi|191173527|ref|ZP_03035054.1| transcription termination/antitermination factor NusB [Escherichia coli F11] gi|193065231|ref|ZP_03046304.1| transcription termination/antitermination factor NusB [Escherichia coli E22] gi|193068719|ref|ZP_03049680.1| transcription termination/antitermination factor NusB [Escherichia coli E110019] gi|194428830|ref|ZP_03061365.1| transcription termination/antitermination factor NusB [Escherichia coli B171] gi|194432551|ref|ZP_03064837.1| transcription termination/antitermination factor NusB [Shigella dysenteriae 1012] gi|194438929|ref|ZP_03071014.1| transcription termination/antitermination factor NusB [Escherichia coli 101-1] gi|195938519|ref|ZP_03083901.1| transcription antitermination protein NusB [Escherichia coli O157:H7 str. EC4024] gi|208809341|ref|ZP_03251678.1| transcription termination/antitermination factor NusB [Escherichia coli O157:H7 str. EC4206] gi|208815911|ref|ZP_03257090.1| transcription termination/antitermination factor NusB [Escherichia coli O157:H7 str. EC4045] gi|208822969|ref|ZP_03263287.1| transcription termination/antitermination factor NusB [Escherichia coli O157:H7 str. EC4042] gi|209396859|ref|YP_002269060.1| transcription termination/antitermination factor NusB [Escherichia coli O157:H7 str. EC4115] gi|209917629|ref|YP_002291713.1| transcription antitermination protein NusB [Escherichia coli SE11] gi|215485497|ref|YP_002327928.1| transcription antitermination protein NusB [Escherichia coli O127:H6 str. E2348/69] gi|217325689|ref|ZP_03441773.1| transcription termination/antitermination factor NusB [Escherichia coli O157:H7 str. TW14588] gi|218552979|ref|YP_002385892.1| transcription antitermination protein NusB [Escherichia coli IAI1] gi|218557325|ref|YP_002390238.1| transcription antitermination protein NusB [Escherichia coli S88] gi|218688279|ref|YP_002396491.1| transcription antitermination protein NusB [Escherichia coli ED1a] gi|218693876|ref|YP_002401543.1| transcription antitermination protein NusB [Escherichia coli 55989] gi|218698675|ref|YP_002406304.1| transcription antitermination protein NusB [Escherichia coli IAI39] gi|218703698|ref|YP_002411217.1| transcription antitermination protein NusB [Escherichia coli UMN026] gi|227884576|ref|ZP_04002381.1| N utilization substance B [Escherichia coli 83972] gi|237707590|ref|ZP_04538071.1| transcription termination [Escherichia sp. 3_2_53FAA] gi|238899704|ref|YP_002925500.1| transcription antitermination protein [Escherichia coli BW2952] gi|253774599|ref|YP_003037430.1| transcription antitermination protein NusB [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|254160482|ref|YP_003043590.1| transcription antitermination protein NusB [Escherichia coli B str. REL606] gi|254791599|ref|YP_003076436.1| transcription antitermination protein NusB [Escherichia coli O157:H7 str. TW14359] gi|256020383|ref|ZP_05434248.1| transcription antitermination protein NusB [Shigella sp. D9] gi|256023967|ref|ZP_05437832.1| transcription antitermination protein NusB [Escherichia sp. 4_1_40B] gi|260842614|ref|YP_003220392.1| transcription antitermination protein NusB [Escherichia coli O103:H2 str. 12009] gi|260853636|ref|YP_003227527.1| transcription antitermination protein NusB [Escherichia coli O26:H11 str. 11368] gi|260866574|ref|YP_003232976.1| transcription antitermination protein NusB [Escherichia coli O111:H- str. 11128] gi|261223895|ref|ZP_05938176.1| transcription antitermination protein [Escherichia coli O157:H7 str. FRIK2000] gi|261256391|ref|ZP_05948924.1| transcription antitermination protein NusB [Escherichia coli O157:H7 str. FRIK966] gi|291281322|ref|YP_003498140.1| N utilization substance protein B-like protein [Escherichia coli O55:H7 str. CB9615] gi|293403535|ref|ZP_06647626.1| N utilization substance protein B [Escherichia coli FVEC1412] gi|293408562|ref|ZP_06652401.1| transcription antitermination factor NusB [Escherichia coli B354] gi|293413670|ref|ZP_06656319.1| transcription antitermination factor NusB [Escherichia coli B185] gi|293418483|ref|ZP_06660918.1| transcription antitermination factor NusB [Escherichia coli B088] gi|297517701|ref|ZP_06936087.1| transcription antitermination protein NusB [Escherichia coli OP50] gi|298379147|ref|ZP_06989028.1| N utilization substance protein B [Escherichia coli FVEC1302] gi|300818260|ref|ZP_07098471.1| transcription antitermination factor NusB [Escherichia coli MS 107-1] gi|300820345|ref|ZP_07100497.1| transcription antitermination factor NusB [Escherichia coli MS 119-7] gi|300900482|ref|ZP_07118649.1| transcription antitermination factor NusB [Escherichia coli MS 198-1] gi|300903319|ref|ZP_07121247.1| transcription antitermination factor NusB [Escherichia coli MS 84-1] gi|300918204|ref|ZP_07134811.1| transcription antitermination factor NusB [Escherichia coli MS 115-1] gi|300924136|ref|ZP_07140128.1| transcription antitermination factor NusB [Escherichia coli MS 182-1] gi|300930289|ref|ZP_07145702.1| transcription antitermination factor NusB [Escherichia coli MS 187-1] gi|300937025|ref|ZP_07151891.1| transcription antitermination factor NusB [Escherichia coli MS 21-1] gi|300947933|ref|ZP_07162081.1| transcription antitermination factor NusB [Escherichia coli MS 116-1] gi|300957981|ref|ZP_07170146.1| transcription antitermination factor NusB [Escherichia coli MS 175-1] gi|300988032|ref|ZP_07178512.1| transcription antitermination factor NusB [Escherichia coli MS 45-1] gi|300997397|ref|ZP_07181737.1| transcription antitermination factor NusB [Escherichia coli MS 200-1] gi|301022595|ref|ZP_07186467.1| transcription antitermination factor NusB [Escherichia coli MS 69-1] gi|301025697|ref|ZP_07189213.1| transcription antitermination factor NusB [Escherichia coli MS 196-1] gi|301049616|ref|ZP_07196567.1| transcription antitermination factor NusB [Escherichia coli MS 185-1] gi|301301564|ref|ZP_07207699.1| transcription antitermination factor NusB [Escherichia coli MS 124-1] gi|301647338|ref|ZP_07247150.1| transcription antitermination factor NusB [Escherichia coli MS 146-1] gi|306813118|ref|ZP_07447311.1| transcription antitermination protein NusB [Escherichia coli NC101] gi|307137059|ref|ZP_07496415.1| transcription antitermination protein NusB [Escherichia coli H736] gi|307312209|ref|ZP_07591845.1| NusB antitermination factor [Escherichia coli W] gi|309787003|ref|ZP_07681615.1| transcription antitermination factor NusB [Shigella dysenteriae 1617] gi|309794859|ref|ZP_07689280.1| transcription antitermination factor NusB [Escherichia coli MS 145-7] gi|312964562|ref|ZP_07778818.1| transcription antitermination factor NusB [Escherichia coli 2362-75] gi|312970511|ref|ZP_07784692.1| transcription antitermination factor NusB [Escherichia coli 1827-70] gi|331640933|ref|ZP_08342068.1| transcription antitermination factor NusB [Escherichia coli H736] gi|331645589|ref|ZP_08346693.1| transcription antitermination factor NusB [Escherichia coli M605] gi|331651350|ref|ZP_08352375.1| transcription antitermination factor NusB [Escherichia coli M718] gi|331656470|ref|ZP_08357432.1| transcription antitermination factor NusB [Escherichia coli TA206] gi|331661793|ref|ZP_08362716.1| transcription antitermination factor NusB [Escherichia coli TA143] gi|331666765|ref|ZP_08367639.1| transcription antitermination factor NusB [Escherichia coli TA271] gi|331671961|ref|ZP_08372757.1| transcription antitermination factor NusB [Escherichia coli TA280] gi|331676083|ref|ZP_08376795.1| transcription antitermination factor NusB [Escherichia coli H591] gi|331681809|ref|ZP_08382442.1| transcription antitermination factor NusB [Escherichia coli H299] gi|332281562|ref|ZP_08393975.1| transcription termination/antitermination factor NusB [Shigella sp. D9] gi|67469828|sp|P0A780|NUSB_ECOLI RecName: Full=N utilization substance protein B; Short=Protein nusB gi|67469829|sp|P0A781|NUSB_ECOL6 RecName: Full=N utilization substance protein B; Short=Protein nusB gi|67469832|sp|P0A782|NUSB_ECO57 RecName: Full=N utilization substance protein B; Short=Protein nusB gi|67469833|sp|P0A783|NUSB_SHIFL RecName: Full=N utilization substance protein B; Short=Protein nusB gi|119390769|sp|Q0TKM5|NUSB_ECOL5 RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|119390770|sp|Q1RFC4|NUSB_ECOUT RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|119390822|sp|Q325I5|NUSB_SHIBS RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|119390823|sp|Q32JH0|NUSB_SHIDS RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|119390824|sp|Q3Z4Z3|NUSB_SHISS RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|122957627|sp|Q0T7H3|NUSB_SHIF8 RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|166918806|sp|A7ZIG9|NUSB_ECO24 RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|166918807|sp|A7ZX68|NUSB_ECOHS RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|189035889|sp|B1J033|NUSB_ECOLC RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|226738899|sp|B7MD74|NUSB_ECO45 RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|226738900|sp|B7NJ81|NUSB_ECO7I RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|226738901|sp|B7M3Q5|NUSB_ECO8A RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|226738902|sp|B7N8W8|NUSB_ECOLU RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|226738903|sp|B1LJG6|NUSB_ECOSM RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|229620059|sp|B1XF04|NUSB_ECODH RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|238055351|sp|B5Z3S0|NUSB_ECO5E RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|238055352|sp|B6HZL7|NUSB_ECOSE RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|238689513|sp|B2U4L9|NUSB_SHIB3 RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|254772637|sp|B7UJN9|NUSB_ECO27 RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|254772638|sp|B7L650|NUSB_ECO55 RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|254772639|sp|B7MQD1|NUSB_ECO81 RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|259514826|sp|C4ZTH3|NUSB_ECOBW RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|9257110|pdb|1EY1|A Chain A, Solution Structure Of Escherichia Coli Nusb gi|12513271|gb|AAG54765.1|AE005221_2 transcription termination; L factor [Escherichia coli O157:H7 str. EDL933] gi|26106820|gb|AAN79005.1|AE016756_188 N utilization substance protein B [Escherichia coli CFT073] gi|146976|gb|AAA24228.1| nusB [Escherichia coli] gi|581148|emb|CAA45737.1| nusB (ssyB) [Escherichia coli K-12] gi|581149|emb|CAA25289.1| unnamed protein product [Escherichia coli] gi|1773100|gb|AAB40172.1| N utilization substance protein B [Escherichia coli] gi|1786618|gb|AAC73519.1| transcription antitermination protein [Escherichia coli str. K-12 substr. MG1655] gi|13359926|dbj|BAB33892.1| transcription termination factor NusB [Escherichia coli O157:H7 str. Sakai] gi|15027052|emb|CAC44764.1| N utilisation substance protein B [Expression vector pNCO113-nusB/nusE] gi|24050582|gb|AAN42011.1| transcription termination factor NusB [Shigella flexneri 2a str. 301] gi|30040155|gb|AAP15888.1| transcription termination factor NusB [Shigella flexneri 2a str. 2457T] gi|73854462|gb|AAZ87169.1| transcription termination; L factor [Shigella sonnei Ss046] gi|81239827|gb|ABB60537.1| NusB [Shigella dysenteriae Sd197] gi|81244315|gb|ABB65023.1| NusB [Shigella boydii Sb227] gi|85674556|dbj|BAE76196.1| transcription antitermination protein [Escherichia coli str. K12 substr. W3110] gi|91071059|gb|ABE05940.1| FJECB transcription termination; L factor [Escherichia coli UTI89] gi|110342269|gb|ABG68506.1| N utilization substance protein B [Escherichia coli 536] gi|110613986|gb|ABF02653.1| transcription termination L factor [Shigella flexneri 5 str. 8401] gi|157065617|gb|ABV04872.1| transcription termination/antitermination factor NusB [Escherichia coli HS] gi|157076913|gb|ABV16621.1| transcription termination/antitermination factor NusB [Escherichia coli E24377A] gi|169756140|gb|ACA78839.1| NusB antitermination factor [Escherichia coli ATCC 8739] gi|169887837|gb|ACB01544.1| transcription antitermination protein [Escherichia coli str. K-12 substr. DH10B] gi|170123208|gb|EDS92139.1| transcription termination/antitermination factor NusB [Escherichia albertii TW07627] gi|170518873|gb|ACB17051.1| transcription termination/antitermination factor NusB [Escherichia coli SMS-3-5] gi|187427979|gb|ACD07253.1| transcription termination/antitermination factor NusB [Shigella boydii CDC 3083-94] gi|187768302|gb|EDU32146.1| transcription termination/antitermination factor NusB [Escherichia coli O157:H7 str. EC4196] gi|188015850|gb|EDU53972.1| transcription termination/antitermination factor NusB [Escherichia coli O157:H7 str. EC4113] gi|188488353|gb|EDU63456.1| transcription termination/antitermination factor NusB [Escherichia coli 53638] gi|188999358|gb|EDU68344.1| transcription termination/antitermination factor NusB [Escherichia coli O157:H7 str. EC4076] gi|189356022|gb|EDU74441.1| transcription termination/antitermination factor NusB [Escherichia coli O157:H7 str. EC4401] gi|189362518|gb|EDU80937.1| transcription termination/antitermination factor NusB [Escherichia coli O157:H7 str. EC4486] gi|189368081|gb|EDU86497.1| transcription termination/antitermination factor NusB [Escherichia coli O157:H7 str. EC4501] gi|189373730|gb|EDU92146.1| transcription termination/antitermination factor NusB [Escherichia coli O157:H7 str. EC869] gi|189377377|gb|EDU95793.1| transcription termination/antitermination factor NusB [Escherichia coli O157:H7 str. EC508] gi|190903212|gb|EDV62934.1| transcription termination/antitermination factor NusB [Escherichia coli B7A] gi|190906236|gb|EDV65848.1| transcription termination/antitermination factor NusB [Escherichia coli F11] gi|192927205|gb|EDV81826.1| transcription termination/antitermination factor NusB [Escherichia coli E22] gi|192958082|gb|EDV88524.1| transcription termination/antitermination factor NusB [Escherichia coli E110019] gi|194413133|gb|EDX29420.1| transcription termination/antitermination factor NusB [Escherichia coli B171] gi|194419112|gb|EDX35195.1| transcription termination/antitermination factor NusB [Shigella dysenteriae 1012] gi|194422223|gb|EDX38225.1| transcription termination/antitermination factor NusB [Escherichia coli 101-1] gi|208729142|gb|EDZ78743.1| transcription termination/antitermination factor NusB [Escherichia coli O157:H7 str. EC4206] gi|208732559|gb|EDZ81247.1| transcription termination/antitermination factor NusB [Escherichia coli O157:H7 str. EC4045] gi|208737162|gb|EDZ84846.1| transcription termination/antitermination factor NusB [Escherichia coli O157:H7 str. EC4042] gi|209158259|gb|ACI35692.1| transcription termination/antitermination factor NusB [Escherichia coli O157:H7 str. EC4115] gi|209744064|gb|ACI70339.1| transcription termination factor NusB [Escherichia coli] gi|209744066|gb|ACI70340.1| transcription termination factor NusB [Escherichia coli] gi|209744068|gb|ACI70341.1| transcription termination factor NusB [Escherichia coli] gi|209744070|gb|ACI70342.1| transcription termination factor NusB [Escherichia coli] gi|209744072|gb|ACI70343.1| transcription termination factor NusB [Escherichia coli] gi|209910888|dbj|BAG75962.1| N utilization substance protein B [Escherichia coli SE11] gi|215263569|emb|CAS07899.1| transcription antitermination protein NusB [Escherichia coli O127:H6 str. E2348/69] gi|217321910|gb|EEC30334.1| transcription termination/antitermination factor NusB [Escherichia coli O157:H7 str. TW14588] gi|218350608|emb|CAU96300.1| transcription antitermination protein [Escherichia coli 55989] gi|218359747|emb|CAQ97288.1| transcription antitermination protein [Escherichia coli IAI1] gi|218364094|emb|CAR01759.1| transcription antitermination protein [Escherichia coli S88] gi|218368661|emb|CAR16400.1| transcription antitermination protein [Escherichia coli IAI39] gi|218425843|emb|CAR06649.1| transcription antitermination protein [Escherichia coli ED1a] gi|218430795|emb|CAR11669.1| transcription antitermination protein [Escherichia coli UMN026] gi|222032211|emb|CAP74950.1| N utilization substance protein B [Escherichia coli LF82] gi|226898800|gb|EEH85059.1| transcription termination [Escherichia sp. 3_2_53FAA] gi|227838662|gb|EEJ49128.1| N utilization substance B [Escherichia coli 83972] gi|238863676|gb|ACR65674.1| transcription antitermination protein [Escherichia coli BW2952] gi|242376194|emb|CAQ30885.1| transcription antitermination protein NusB, subunit of NusB-NusE complex [Escherichia coli BL21(DE3)] gi|253325643|gb|ACT30245.1| NusB antitermination factor [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|253972383|gb|ACT38054.1| transcription antitermination protein NusB [Escherichia coli B str. REL606] gi|253976593|gb|ACT42263.1| transcription antitermination protein NusB [Escherichia coli BL21(DE3)] gi|254590999|gb|ACT70360.1| transcription antitermination protein [Escherichia coli O157:H7 str. TW14359] gi|257752285|dbj|BAI23787.1| transcription antitermination protein NusB [Escherichia coli O26:H11 str. 11368] gi|257757761|dbj|BAI29258.1| transcription antitermination protein NusB [Escherichia coli O103:H2 str. 12009] gi|257762930|dbj|BAI34425.1| transcription antitermination protein NusB [Escherichia coli O111:H- str. 11128] gi|260450397|gb|ACX40819.1| NusB antitermination factor [Escherichia coli DH1] gi|281177586|dbj|BAI53916.1| N utilization substance protein B [Escherichia coli SE15] gi|281599748|gb|ADA72732.1| N utilization substance protein B [Shigella flexneri 2002017] gi|284920225|emb|CBG33284.1| N utilization substance protein B [Escherichia coli 042] gi|290761195|gb|ADD55156.1| N utilization substance protein B-like protein [Escherichia coli O55:H7 str. CB9615] gi|291325011|gb|EFE64426.1| transcription antitermination factor NusB [Escherichia coli B088] gi|291429388|gb|EFF02408.1| N utilization substance protein B [Escherichia coli FVEC1412] gi|291433728|gb|EFF06701.1| transcription antitermination factor NusB [Escherichia coli B185] gi|291471740|gb|EFF14223.1| transcription antitermination factor NusB [Escherichia coli B354] gi|294491145|gb|ADE89901.1| transcription termination/antitermination factor NusB [Escherichia coli IHE3034] gi|298280260|gb|EFI21764.1| N utilization substance protein B [Escherichia coli FVEC1302] gi|299880009|gb|EFI88220.1| transcription antitermination factor NusB [Escherichia coli MS 196-1] gi|300298609|gb|EFJ54994.1| transcription antitermination factor NusB [Escherichia coli MS 185-1] gi|300304216|gb|EFJ58736.1| transcription antitermination factor NusB [Escherichia coli MS 200-1] gi|300315317|gb|EFJ65101.1| transcription antitermination factor NusB [Escherichia coli MS 175-1] gi|300355963|gb|EFJ71833.1| transcription antitermination factor NusB [Escherichia coli MS 198-1] gi|300397476|gb|EFJ81014.1| transcription antitermination factor NusB [Escherichia coli MS 69-1] gi|300404614|gb|EFJ88152.1| transcription antitermination factor NusB [Escherichia coli MS 84-1] gi|300407584|gb|EFJ91122.1| transcription antitermination factor NusB [Escherichia coli MS 45-1] gi|300414655|gb|EFJ97965.1| transcription antitermination factor NusB [Escherichia coli MS 115-1] gi|300419589|gb|EFK02900.1| transcription antitermination factor NusB [Escherichia coli MS 182-1] gi|300452533|gb|EFK16153.1| transcription antitermination factor NusB [Escherichia coli MS 116-1] gi|300457856|gb|EFK21349.1| transcription antitermination factor NusB [Escherichia coli MS 21-1] gi|300461861|gb|EFK25354.1| transcription antitermination factor NusB [Escherichia coli MS 187-1] gi|300527130|gb|EFK48199.1| transcription antitermination factor NusB [Escherichia coli MS 119-7] gi|300529151|gb|EFK50213.1| transcription antitermination factor NusB [Escherichia coli MS 107-1] gi|300843061|gb|EFK70821.1| transcription antitermination factor NusB [Escherichia coli MS 124-1] gi|301074483|gb|EFK89289.1| transcription antitermination factor NusB [Escherichia coli MS 146-1] gi|305853881|gb|EFM54320.1| transcription antitermination protein NusB [Escherichia coli NC101] gi|306907711|gb|EFN38213.1| NusB antitermination factor [Escherichia coli W] gi|307552321|gb|ADN45096.1| N utilization substance protein B [Escherichia coli ABU 83972] gi|307628115|gb|ADN72419.1| transcription antitermination protein NusB [Escherichia coli UM146] gi|308121512|gb|EFO58774.1| transcription antitermination factor NusB [Escherichia coli MS 145-7] gi|308924581|gb|EFP70076.1| transcription antitermination factor NusB [Shigella dysenteriae 1617] gi|309700678|emb|CBI99974.1| N utilization substance protein B [Escherichia coli ETEC H10407] gi|310337160|gb|EFQ02298.1| transcription antitermination factor NusB [Escherichia coli 1827-70] gi|312290796|gb|EFR18673.1| transcription antitermination factor NusB [Escherichia coli 2362-75] gi|312944993|gb|ADR25820.1| transcription antitermination protein NusB [Escherichia coli O83:H1 str. NRG 857C] gi|313646967|gb|EFS11424.1| transcription antitermination factor NusB [Shigella flexneri 2a str. 2457T] gi|315059693|gb|ADT74020.1| transcription antitermination protein [Escherichia coli W] gi|315135098|dbj|BAJ42257.1| N utilization substance protein B-like protein [Escherichia coli DH1] gi|315256241|gb|EFU36209.1| transcription antitermination factor NusB [Escherichia coli MS 85-1] gi|315289869|gb|EFU49259.1| transcription antitermination factor NusB [Escherichia coli MS 110-3] gi|315294205|gb|EFU53556.1| transcription antitermination factor NusB [Escherichia coli MS 153-1] gi|315299582|gb|EFU58830.1| transcription antitermination factor NusB [Escherichia coli MS 16-3] gi|315616644|gb|EFU97261.1| transcription antitermination factor NusB [Escherichia coli 3431] gi|320173766|gb|EFW48949.1| Transcription termination protein NusB [Shigella dysenteriae CDC 74-1112] gi|320181602|gb|EFW56517.1| Transcription termination protein NusB [Shigella boydii ATCC 9905] gi|320186045|gb|EFW60790.1| Transcription termination protein NusB [Shigella flexneri CDC 796-83] gi|320192829|gb|EFW67469.1| Transcription termination protein NusB [Escherichia coli O157:H7 str. EC1212] gi|320197146|gb|EFW71763.1| Transcription termination protein NusB [Escherichia coli WV_060327] gi|320201657|gb|EFW76233.1| Transcription termination protein NusB [Escherichia coli EC4100B] gi|320638408|gb|EFX08122.1| transcription antitermination protein NusB [Escherichia coli O157:H7 str. G5101] gi|320643788|gb|EFX12911.1| transcription antitermination protein NusB [Escherichia coli O157:H- str. 493-89] gi|320649139|gb|EFX17717.1| transcription antitermination protein NusB [Escherichia coli O157:H- str. H 2687] gi|320656032|gb|EFX23948.1| transcription antitermination protein NusB [Escherichia coli O55:H7 str. 3256-97 TW 07815] gi|320661182|gb|EFX28613.1| transcription antitermination protein NusB [Escherichia coli O55:H7 str. USDA 5905] gi|320665158|gb|EFX32251.1| transcription antitermination protein NusB [Escherichia coli O157:H7 str. LSU-61] gi|323152116|gb|EFZ38409.1| transcription antitermination factor NusB [Escherichia coli EPECa14] gi|323160477|gb|EFZ46425.1| transcription antitermination factor NusB [Escherichia coli E128010] gi|323164207|gb|EFZ50014.1| transcription antitermination factor NusB [Shigella sonnei 53G] gi|323170498|gb|EFZ56148.1| transcription antitermination factor NusB [Escherichia coli LT-68] gi|323178321|gb|EFZ63899.1| transcription antitermination factor NusB [Escherichia coli 1180] gi|323184758|gb|EFZ70129.1| transcription antitermination factor NusB [Escherichia coli 1357] gi|323191334|gb|EFZ76597.1| transcription antitermination factor NusB [Escherichia coli RN587/1] gi|323379741|gb|ADX52009.1| NusB antitermination factor [Escherichia coli KO11] gi|323938601|gb|EGB34850.1| transcription antitermination protein NusB [Escherichia coli E1520] gi|323943222|gb|EGB39378.1| transcription antitermination protein NusB [Escherichia coli E482] gi|323945317|gb|EGB41373.1| transcription antitermination protein NusB [Escherichia coli H120] gi|323952972|gb|EGB48840.1| transcription antitermination protein NusB [Escherichia coli H252] gi|323958609|gb|EGB54312.1| transcription antitermination protein NusB [Escherichia coli H263] gi|323963402|gb|EGB58964.1| transcription antitermination protein NusB [Escherichia coli H489] gi|323965098|gb|EGB60557.1| transcription antitermination protein NusB [Escherichia coli M863] gi|323972266|gb|EGB67476.1| transcription antitermination protein NusB [Escherichia coli TA007] gi|323976103|gb|EGB71196.1| transcription antitermination protein NusB [Escherichia coli TW10509] gi|324010093|gb|EGB79312.1| transcription antitermination factor NusB [Escherichia coli MS 57-2] gi|324010676|gb|EGB79895.1| transcription antitermination factor NusB [Escherichia coli MS 60-1] gi|324016678|gb|EGB85897.1| transcription antitermination factor NusB [Escherichia coli MS 117-3] gi|324116900|gb|EGC10813.1| transcription antitermination protein NusB [Escherichia coli E1167] gi|326341177|gb|EGD64969.1| Transcription termination protein NusB [Escherichia coli O157:H7 str. 1044] gi|326346048|gb|EGD69787.1| Transcription termination protein NusB [Escherichia coli O157:H7 str. 1125] gi|327254737|gb|EGE66353.1| transcription antitermination factor NusB [Escherichia coli STEC_7v] gi|330910210|gb|EGH38720.1| transcription termination protein NusB [Escherichia coli AA86] gi|331037731|gb|EGI09951.1| transcription antitermination factor NusB [Escherichia coli H736] gi|331045751|gb|EGI17877.1| transcription antitermination factor NusB [Escherichia coli M605] gi|331051091|gb|EGI23143.1| transcription antitermination factor NusB [Escherichia coli M718] gi|331054718|gb|EGI26727.1| transcription antitermination factor NusB [Escherichia coli TA206] gi|331060215|gb|EGI32179.1| transcription antitermination factor NusB [Escherichia coli TA143] gi|331065989|gb|EGI37873.1| transcription antitermination factor NusB [Escherichia coli TA271] gi|331070950|gb|EGI42309.1| transcription antitermination factor NusB [Escherichia coli TA280] gi|331076141|gb|EGI47423.1| transcription antitermination factor NusB [Escherichia coli H591] gi|331081011|gb|EGI52176.1| transcription antitermination factor NusB [Escherichia coli H299] gi|332086022|gb|EGI91186.1| transcription antitermination factor NusB [Shigella dysenteriae 155-74] gi|332094566|gb|EGI99612.1| transcription antitermination factor NusB [Shigella boydii 5216-82] gi|332098578|gb|EGJ03544.1| transcription antitermination factor NusB [Shigella boydii 3594-74] gi|332103914|gb|EGJ07260.1| transcription termination/antitermination factor NusB [Shigella sp. D9] gi|332341779|gb|AEE55113.1| transcription antitermination factor protein NusB [Escherichia coli UMNK88] gi|332760696|gb|EGJ90984.1| transcription antitermination factor NusB [Shigella flexneri 4343-70] gi|332761743|gb|EGJ92022.1| transcription antitermination factor NusB [Shigella flexneri 2747-71] gi|332764293|gb|EGJ94529.1| transcription antitermination factor NusB [Shigella flexneri K-671] gi|332768521|gb|EGJ98704.1| transcription antitermination factor NusB [Shigella flexneri 2930-71] gi|333007978|gb|EGK27454.1| transcription antitermination factor NusB [Shigella flexneri K-218] gi|333008611|gb|EGK28079.1| transcription antitermination factor NusB [Shigella flexneri VA-6] gi|333010858|gb|EGK30284.1| transcription antitermination factor NusB [Shigella flexneri K-272] gi|333021357|gb|EGK40610.1| transcription antitermination factor NusB [Shigella flexneri K-227] gi|333022014|gb|EGK41259.1| transcription antitermination factor NusB [Shigella flexneri K-304] gi|1096319|prf||2111328A NusB protein Length = 139 Score = 157 bits (399), Expect = 4e-37, Method: Composition-based stats. Identities = 36/134 (26%), Positives = 61/134 (45%), Gaps = 13/134 (9%) Query: 21 LAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRK 80 AVQALY + ++ ++ + D VD+ +FR ++ GV Sbjct: 11 ECAVQALYSWQLSQNDIADVEYQFLAEQDVKD-----------VDVLYFRELLAGVATNT 59 Query: 81 QHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYG 140 ++D L+ L+ L + ++LR + EL + VP +V I+E + +A F Sbjct: 60 AYLDGLMKPYLSR--LLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAE 117 Query: 141 DEPKFINAVLDKVS 154 D KF+N VLDK + Sbjct: 118 DSHKFVNGVLDKAA 131 >gi|115377906|ref|ZP_01465091.1| transcription antitermination factor NusB [Stigmatella aurantiaca DW4/3-1] gi|310822844|ref|YP_003955202.1| n utilization substance protein b [Stigmatella aurantiaca DW4/3-1] gi|115365066|gb|EAU64116.1| transcription antitermination factor NusB [Stigmatella aurantiaca DW4/3-1] gi|309395916|gb|ADO73375.1| N utilization substance protein B [Stigmatella aurantiaca DW4/3-1] Length = 141 Score = 157 bits (398), Expect = 4e-37, Method: Composition-based stats. Identities = 36/139 (25%), Positives = 66/139 (47%), Gaps = 7/139 (5%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 R R A+QALYQ+++ ++ + + D E+ + + + ++ G Sbjct: 4 RRTGRERALQALYQLEMTPSTSVHEALASAWAASSEEGKPDPEA------VRFAQELVEG 57 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135 V R+ +D LI + W R+ I ++LR GV EL +P +V I+E V + Sbjct: 58 VQTRRAEVDQLIEKH-SHNWRLDRMSRIDRNVLRLGVFELKYRPDIPKKVSINEAVELGK 116 Query: 136 DFFYGDEPKFINAVLDKVS 154 +F + F+N +LD+V+ Sbjct: 117 NFGTEESSAFVNGLLDRVA 135 >gi|220702382|pdb|3D3B|A Chain A, Structural And Functional Analysis Of The E. Coli Nusb-S10 Transcription Antitermination Complex. gi|220702384|pdb|3D3C|A Chain A, Structural And Functional Analysis Of The E. Coli Nusb-S10 Transcription Antitermination Complex. gi|220702386|pdb|3D3C|B Chain B, Structural And Functional Analysis Of The E. Coli Nusb-S10 Transcription Antitermination Complex. gi|220702388|pdb|3D3C|C Chain C, Structural And Functional Analysis Of The E. Coli Nusb-S10 Transcription Antitermination Complex Length = 141 Score = 157 bits (398), Expect = 4e-37, Method: Composition-based stats. Identities = 36/134 (26%), Positives = 61/134 (45%), Gaps = 13/134 (9%) Query: 21 LAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRK 80 AVQALY + ++ ++ + D VD+ +FR ++ GV Sbjct: 13 ECAVQALYSWQLSQNDIADVEYQFLAEQDVKD-----------VDVLYFRELLAGVATNT 61 Query: 81 QHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYG 140 ++D L+ L+ L + ++LR + EL + VP +V I+E + +A F Sbjct: 62 AYLDGLMKPYLSR--LLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAE 119 Query: 141 DEPKFINAVLDKVS 154 D KF+N VLDK + Sbjct: 120 DSHKFVNGVLDKAA 133 >gi|50120067|ref|YP_049234.1| transcription antitermination protein NusB [Pectobacterium atrosepticum SCRI1043] gi|81645878|sp|Q6D847|NUSB_ERWCT RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|49610593|emb|CAG74038.1| N utilization substance protein B [Pectobacterium atrosepticum SCRI1043] Length = 139 Score = 157 bits (398), Expect = 4e-37, Method: Composition-based stats. Identities = 37/134 (27%), Positives = 64/134 (47%), Gaps = 13/134 (9%) Query: 21 LAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRK 80 AVQALY + ++ ++ + + D VD+ +FR ++ GV + Sbjct: 11 ECAVQALYSWQLSKNDIADVEHQFLSEQDVKD-----------VDITYFRELLAGVATQA 59 Query: 81 QHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYG 140 + +D L++ L+ L + +ILR + EL + VP +V I+E + +A F Sbjct: 60 EKLDQLMAPFLSR--RIDELGQVEKAILRLAMFELSKREDVPYKVAINEAIELAKIFGAE 117 Query: 141 DEPKFINAVLDKVS 154 D KF+N VLDK + Sbjct: 118 DSHKFVNGVLDKAA 131 >gi|229543899|ref|ZP_04432958.1| NusB antitermination factor [Bacillus coagulans 36D1] gi|229325038|gb|EEN90714.1| NusB antitermination factor [Bacillus coagulans 36D1] Length = 132 Score = 157 bits (398), Expect = 4e-37, Method: Composition-based stats. Identities = 43/146 (29%), Positives = 64/146 (43%), Gaps = 16/146 (10%) Query: 15 RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74 +R AR A+QAL+Q+D+ S + I + D + +++ Sbjct: 3 KRRTAREKALQALFQMDMNEASPEDAIRNALDGQESDD---------------YLEKLVN 47 Query: 75 GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134 G ID +IS L E W+ RL + +ILR EL+ VP V I+E + IA Sbjct: 48 GTATHLAEIDAMISQHL-ENWTLDRLAKVELNILRLAAYELMYAEDVPANVAINEALEIA 106 Query: 135 HDFFYGDEPKFINAVLDKVSRKEEIK 160 F KFIN VL+++ E K Sbjct: 107 KRFADEKSAKFINGVLNQMKDSIESK 132 >gi|296333411|ref|ZP_06875864.1| transcription antitermination protein NusB [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305675083|ref|YP_003866755.1| transcription antitermination protein NusB [Bacillus subtilis subsp. spizizenii str. W23] gi|296149609|gb|EFG90505.1| transcription antitermination protein NusB [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305413327|gb|ADM38446.1| transcription antitermination protein NusB [Bacillus subtilis subsp. spizizenii str. W23] Length = 131 Score = 157 bits (398), Expect = 4e-37, Method: Composition-based stats. Identities = 38/144 (26%), Positives = 62/144 (43%), Gaps = 16/144 (11%) Query: 15 RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74 +R AR A+QAL+QID+ + E I +F ++H Sbjct: 2 KRRTAREKALQALFQIDVSDIAVNEAIEHALDEEKTD---------------PFFEQLVH 46 Query: 75 GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134 GV++ + +D +IS L W R+ + +ILR E+ +PV V ++E + +A Sbjct: 47 GVLEHQVQLDEMISKHLV-NWKLDRIANVDRAILRLAAYEMAYAEDIPVNVSMNEAIELA 105 Query: 135 HDFFYGDEPKFINAVLDKVSRKEE 158 F KF+N VL + E Sbjct: 106 KRFGDDKATKFVNGVLSNIKSDIE 129 >gi|296115207|ref|ZP_06833848.1| NusB antitermination factor [Gluconacetobacter hansenii ATCC 23769] gi|295978308|gb|EFG85045.1| NusB antitermination factor [Gluconacetobacter hansenii ATCC 23769] Length = 183 Score = 157 bits (398), Expect = 4e-37, Method: Composition-based stats. Identities = 52/167 (31%), Positives = 85/167 (50%), Gaps = 2/167 (1%) Query: 4 QDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRF--CADTELDVESVY 61 D+ + R +R+ AVQAL+QI+ G + ++S++ +R + E Sbjct: 9 PDDTPRKDRNRSRTASRVGAVQALFQIEQGGDNAENVVSQFTHHRLPTGKTSLGYAEGQV 68 Query: 62 LHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSV 121 D+ F I+ G + R+ ID +++ L W RLD +L ++LRA EL Sbjct: 69 PDADIRLFTAIVRGSVARQADIDAMVADVLPASWPMDRLDPVLRALLRAAGGELTAQDPA 128 Query: 122 PVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRSGCVSAI 168 P VII+EY+ +AH FF GDEP+ +N VLD +SR+ + + + Sbjct: 129 PSRVIINEYMDVAHGFFSGDEPRMLNGVLDAMSRRIAGTEAAPATPV 175 >gi|157692931|ref|YP_001487393.1| transcription antitermination protein NusB [Bacillus pumilus SAFR-032] gi|166918803|sp|A8FF16|NUSB_BACP2 RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|157681689|gb|ABV62833.1| transcription antitermination protein NusB [Bacillus pumilus SAFR-032] Length = 131 Score = 157 bits (398), Expect = 4e-37, Method: Composition-based stats. Identities = 40/148 (27%), Positives = 69/148 (46%), Gaps = 18/148 (12%) Query: 15 RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74 +R AR A+Q L+QID+ E I+ + +F ++ Sbjct: 2 KRRTAREKALQTLFQIDVSNIDPKEAITHALDEQESD---------------PFFEELVF 46 Query: 75 GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134 GV+++K +D +IS L W R+ + +ILR V E++ +PV V ++E + +A Sbjct: 47 GVLEQKDKLDDMISQHLV-NWKLDRIANVDRAILRLSVYEMVYQEDIPVSVSMNEAIELA 105 Query: 135 HDFFYGDEPKFINAVLDKVSRKEEIKRS 162 F PKF+N VL + K ++K+ Sbjct: 106 KLFGDDKAPKFVNGVLSNI--KNDLKQQ 131 >gi|190572778|ref|YP_001970623.1| transcription antitermination protein NusB [Stenotrophomonas maltophilia K279a] gi|229620370|sp|B2FNL4|NUSB_STRMK RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|190010700|emb|CAQ44309.1| putative N utilization substance protein B (protein nusb) [Stenotrophomonas maltophilia K279a] Length = 159 Score = 157 bits (398), Expect = 5e-37, Method: Composition-based stats. Identities = 44/168 (26%), Positives = 68/168 (40%), Gaps = 20/168 (11%) Query: 3 IQDNKKDLKLSHR-------RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTEL 55 K K R R AR AVQA+Y I G + +I+++ Sbjct: 4 NTQGKPSGKPVRRDGVDPVLRSRARRRAVQAIYAWQISGGNAQSLIAQFAH--------- 54 Query: 56 DVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLEL 115 E DL +F ++HGV+D ++ ID + L +D I ++LR EL Sbjct: 55 --EQAREIADLAYFEALLHGVLDNRRDIDEALGPYLDRG--IEEVDAIERAVLRLAGYEL 110 Query: 116 IECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRSG 163 VP V+I+E + A F ++N VLD+ + + SG Sbjct: 111 RYRLDVPYRVVINEAIESAKRFGSEHGHTYVNGVLDRAAVEWRKVESG 158 >gi|294678589|ref|YP_003579204.1| transcription antitermination factor NusB [Rhodobacter capsulatus SB 1003] gi|294477409|gb|ADE86797.1| transcription antitermination factor NusB [Rhodobacter capsulatus SB 1003] Length = 165 Score = 157 bits (398), Expect = 5e-37, Method: Composition-based stats. Identities = 53/166 (31%), Positives = 83/166 (50%), Gaps = 9/166 (5%) Query: 1 MTIQDNKKDLKLS-----HRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTEL 55 MT K K S R ARL AVQAL+Q++ G + E+E++RF T Sbjct: 1 MTDTTPDKPRKPSPEEKRRMRSAARLYAVQALFQMEAAGQGVDRVAREFESFRFGMVT-- 58 Query: 56 DVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLEL 115 D D + FR ++ + + ID L W R+D +L ++ RA E+ Sbjct: 59 DEGEELAEGDYDLFRRLLDDAVMWQAKIDQTTDRALVATWPIERIDPVLRALFRAAGAEM 118 Query: 116 IECHSVPVEVIISEYVCIAHDFF-YGDEPKFINAVLDKVSRKEEIK 160 + + P++V+I+E+V +A FF G E KF+NAVLD ++R+ + Sbjct: 119 VN-PATPIKVVINEFVEVARAFFPEGKETKFVNAVLDHMAREVRPE 163 >gi|332288213|ref|YP_004419065.1| transcription antitermination protein NusB [Gallibacterium anatis UMN179] gi|330431109|gb|AEC16168.1| transcription antitermination protein NusB [Gallibacterium anatis UMN179] Length = 145 Score = 157 bits (398), Expect = 5e-37, Method: Composition-based stats. Identities = 44/160 (27%), Positives = 71/160 (44%), Gaps = 15/160 (9%) Query: 1 MTIQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESV 60 M Q +K K +R AR VQALY I S I + +L Sbjct: 1 MNPQ--QKTEKKPSKRRRARECTVQALYSWFISKNSPESI-----------ELDLVTNDE 47 Query: 61 YLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHS 120 D+ +FR + +G ++ +++ +S L K L I +IL EL Sbjct: 48 TKGADVVYFRKLFNGTVNNLDNLEQEYASFLDRK--IEELGTIERAILDCATFELKYVDD 105 Query: 121 VPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIK 160 +P +V+I+E + +A F D K+IN++LDK++ K +K Sbjct: 106 IPYKVVINEAIEVAKTFGASDSHKYINSILDKLAPKFGLK 145 >gi|162147540|ref|YP_001602001.1| N utilization substance protein B-like protein [Gluconacetobacter diazotrophicus PAl 5] gi|209545645|ref|YP_002277874.1| NusB antitermination factor [Gluconacetobacter diazotrophicus PAl 5] gi|161786117|emb|CAP55699.1| N utilization substance protein B homolog [Gluconacetobacter diazotrophicus PAl 5] gi|209533322|gb|ACI53259.1| NusB antitermination factor [Gluconacetobacter diazotrophicus PAl 5] Length = 183 Score = 157 bits (398), Expect = 5e-37, Method: Composition-based stats. Identities = 56/162 (34%), Positives = 83/162 (51%), Gaps = 5/162 (3%) Query: 3 IQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVY- 61 I D+ + R +R+A VQAL+QI+ G + +I+++ +R + D Y Sbjct: 4 IPDDDRTHSKPRSRTASRVAVVQALFQIEQAGDTPDTVIAQFLRHRLGTASGADQGEEYE 63 Query: 62 ----LHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIE 117 D+ F + + R++ ID LI L W RLD +L ++LRA EL Sbjct: 64 DGRVPEADIRLFEQVARAAVARREQIDALIVEVLPPSWPVGRLDPVLRALLRAAGAELAA 123 Query: 118 CHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEI 159 VP VII+EY+ IAH FF GDEPK +N VLD ++R+ Sbjct: 124 TGGVPTRVIINEYLDIAHGFFSGDEPKMVNGVLDTLARRLRA 165 >gi|301330723|ref|ZP_07223325.1| transcription antitermination factor NusB [Escherichia coli MS 78-1] gi|300843384|gb|EFK71144.1| transcription antitermination factor NusB [Escherichia coli MS 78-1] Length = 139 Score = 157 bits (397), Expect = 5e-37, Method: Composition-based stats. Identities = 36/134 (26%), Positives = 60/134 (44%), Gaps = 13/134 (9%) Query: 21 LAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRK 80 AVQALY + ++ ++ + D VD+ +FR ++ GV Sbjct: 11 ECAVQALYSWQLSQNDIADVEYQFLAEQDVKD-----------VDVLYFRELLAGVATNT 59 Query: 81 QHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYG 140 +D L+ L+ L + ++LR + EL + VP +V I+E + +A F Sbjct: 60 ASLDGLMKPYLSR--LLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAE 117 Query: 141 DEPKFINAVLDKVS 154 D KF+N VLDK + Sbjct: 118 DSHKFVNGVLDKAA 131 >gi|163733974|ref|ZP_02141415.1| N utilization substance protein B-like protein, putative [Roseobacter litoralis Och 149] gi|161392510|gb|EDQ16838.1| N utilization substance protein B-like protein, putative [Roseobacter litoralis Och 149] Length = 160 Score = 157 bits (397), Expect = 5e-37, Method: Composition-based stats. Identities = 51/154 (33%), Positives = 78/154 (50%), Gaps = 8/154 (5%) Query: 9 DLKLSHRR---GIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVD 65 +L + RR ARL AVQAL+Q++ G + + E+ +RF + L D Sbjct: 7 NLSGNQRRKMKSAARLYAVQALFQMEHSGQTIEIVRREFLEHRFGETYDGQE---MLDGD 63 Query: 66 LEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEV 125 ++ F +I G ++ + ID + L KW R+D L ++ RA EL P +V Sbjct: 64 VDLFDTVIEGAVNFQAPIDQMTDRALVAKWPLGRIDPTLRALFRAAGAEL-NGKDTPPKV 122 Query: 126 IISEYVCIAHDFFYG-DEPKFINAVLDKVSRKEE 158 +ISEYV +A FF EPK +N VLD ++R+ Sbjct: 123 VISEYVDVARAFFEDGKEPKLVNGVLDHMAREAR 156 >gi|149185970|ref|ZP_01864285.1| NusB antitermination factor [Erythrobacter sp. SD-21] gi|148830531|gb|EDL48967.1| NusB antitermination factor [Erythrobacter sp. SD-21] Length = 150 Score = 157 bits (397), Expect = 5e-37, Method: Composition-based stats. Identities = 56/145 (38%), Positives = 83/145 (57%), Gaps = 3/145 (2%) Query: 12 LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71 S R ARL AVQALYQ + G +T ++++E+ +R E + Y D+++F Sbjct: 6 KSQSRSAARLGAVQALYQQQMEGTATAKLLNEFHLHRLGKVIE---DEEYADADVDFFDD 62 Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131 ++ GV R+ ID L+++ L W+ +RLD + ILRAG ELI VP ISEYV Sbjct: 63 LVKGVDARRAEIDELLTARLASGWTLARLDKTMLQILRAGSYELIARKDVPKAAAISEYV 122 Query: 132 CIAHDFFYGDEPKFINAVLDKVSRK 156 +A FF E KF+N +LD V+++ Sbjct: 123 DVAKAFFDDREAKFVNGILDAVAKE 147 >gi|238795564|ref|ZP_04639079.1| N utilization substance protein B [Yersinia mollaretii ATCC 43969] gi|238720683|gb|EEQ12484.1| N utilization substance protein B [Yersinia mollaretii ATCC 43969] Length = 138 Score = 157 bits (397), Expect = 5e-37, Method: Composition-based stats. Identities = 36/134 (26%), Positives = 63/134 (47%), Gaps = 13/134 (9%) Query: 21 LAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRK 80 AVQA+Y + ++ ++ + E VD+ +FR ++ GV Sbjct: 11 ECAVQAIYSWQLSKNDIADVELQFLS-----------EQDVKDVDIAYFRELLSGVAVNA 59 Query: 81 QHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYG 140 +D L++ L+ + L + ++LR + EL + VP +V I+E + +A F Sbjct: 60 ASLDALMAPFLSRQ--LEELGQVERAVLRIALFELSKREDVPYKVAINEAIELAKTFGAE 117 Query: 141 DEPKFINAVLDKVS 154 D KF+N VLDKV+ Sbjct: 118 DSHKFVNGVLDKVA 131 >gi|52080965|ref|YP_079756.1| transcription antitermination protein NusB [Bacillus licheniformis ATCC 14580] gi|52786341|ref|YP_092170.1| transcription antitermination protein NusB [Bacillus licheniformis ATCC 14580] gi|319645077|ref|ZP_07999310.1| N utilization substance protein B [Bacillus sp. BT1B_CT2] gi|81609065|sp|Q65HI7|NUSB_BACLD RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|52004176|gb|AAU24118.1| NusB [Bacillus licheniformis ATCC 14580] gi|52348843|gb|AAU41477.1| NusB [Bacillus licheniformis ATCC 14580] gi|317392886|gb|EFV73680.1| N utilization substance protein B [Bacillus sp. BT1B_CT2] Length = 129 Score = 157 bits (397), Expect = 5e-37, Method: Composition-based stats. Identities = 38/144 (26%), Positives = 63/144 (43%), Gaps = 16/144 (11%) Query: 15 RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74 +R AR A+Q+L+QID+ E + + +F +++ Sbjct: 2 KRRTAREKALQSLFQIDVSDIEPNEAMQHALDGQESD---------------AFFEQLVY 46 Query: 75 GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134 GV++ K+ ID +I L W RL + +ILR E+I +PV V ++E + +A Sbjct: 47 GVLENKEKIDEMIKRHLV-NWKLDRLANVDRAILRLSAYEMIFLDDIPVNVSMNEAIELA 105 Query: 135 HDFFYGDEPKFINAVLDKVSRKEE 158 F KF+N VL + E Sbjct: 106 KQFGDDKSAKFVNGVLSNIKSDLE 129 >gi|194364362|ref|YP_002026972.1| transcription antitermination protein NusB [Stenotrophomonas maltophilia R551-3] gi|238693436|sp|B4SJC1|NUSB_STRM5 RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|194347166|gb|ACF50289.1| NusB antitermination factor [Stenotrophomonas maltophilia R551-3] Length = 159 Score = 157 bits (397), Expect = 6e-37, Method: Composition-based stats. Identities = 44/168 (26%), Positives = 68/168 (40%), Gaps = 20/168 (11%) Query: 3 IQDNKKDLKLSHR-------RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTEL 55 K K R R AR AVQA+Y I G + +I+++ Sbjct: 4 NTQGKPSGKPVRRDGVDPVLRSRARRRAVQAIYAWQISGGNAQSLIAQFAH--------- 54 Query: 56 DVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLEL 115 E DL +F ++HGV+D ++ ID + L +D I ++LR EL Sbjct: 55 --EQAREIADLAYFEALMHGVLDNRRDIDEALGPYLDRG--IEEVDAIERAVLRLAGYEL 110 Query: 116 IECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRSG 163 VP V+I+E + A F ++N VLD+ + + SG Sbjct: 111 RYRLDVPYRVVINEAIESAKRFGSEHGHTYVNGVLDRAAVELRKVESG 158 >gi|254516860|ref|ZP_05128918.1| transcription antitermination factor NusB [gamma proteobacterium NOR5-3] gi|219674365|gb|EED30733.1| transcription antitermination factor NusB [gamma proteobacterium NOR5-3] Length = 150 Score = 157 bits (397), Expect = 6e-37, Method: Composition-based stats. Identities = 52/148 (35%), Positives = 76/148 (51%), Gaps = 13/148 (8%) Query: 14 HRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVII 73 RR AR A+QALYQ + G ++I +E+ T + + VDLE+F+ +I Sbjct: 11 ARRRKARHYALQALYQWHMAGARPSDIEAEFRT-----------DYDFEVVDLEYFQALI 59 Query: 74 HGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCI 133 HGV Q +D L+ L + LD I S+LR G EL + VP V+I+E V + Sbjct: 60 HGVPPLAQELDSLLEPLLDRE--LRELDPIERSLLRMGGFELRDRIDVPYRVVINESVAL 117 Query: 134 AHDFFYGDEPKFINAVLDKVSRKEEIKR 161 A F + K+IN VLDK++R+ Sbjct: 118 AKKFGAAESYKYINGVLDKLARQLRGPE 145 >gi|123443366|ref|YP_001007340.1| transcription antitermination protein NusB [Yersinia enterocolitica subsp. enterocolitica 8081] gi|332160727|ref|YP_004297304.1| transcription antitermination protein NusB [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|166215729|sp|A1JNS2|NUSB_YERE8 RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|122090327|emb|CAL13193.1| N utilization substance protein B [Yersinia enterocolitica subsp. enterocolitica 8081] gi|318604606|emb|CBY26104.1| transcription termination protein NusB [Yersinia enterocolitica subsp. palearctica Y11] gi|325664957|gb|ADZ41601.1| transcription antitermination protein NusB [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|330863853|emb|CBX73946.1| N utilization substance protein B homolog [Yersinia enterocolitica W22703] Length = 138 Score = 157 bits (397), Expect = 6e-37, Method: Composition-based stats. Identities = 37/134 (27%), Positives = 64/134 (47%), Gaps = 13/134 (9%) Query: 21 LAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRK 80 AVQALY + ++ ++ + + D VD+ +FR ++ GV Sbjct: 11 ECAVQALYSWQLSKNDIADVELQFLSEQDVKD-----------VDIAYFRELLSGVAVNA 59 Query: 81 QHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYG 140 +D L++ L+ + L + ++LR + EL + VP +V I+E + +A F Sbjct: 60 ASLDALMAPVLSRQ--LEELGQVERAVLRIALFELSKRDDVPYKVAINEAIELAKTFGAA 117 Query: 141 DEPKFINAVLDKVS 154 D KF+N VLDKV+ Sbjct: 118 DSHKFVNGVLDKVA 131 >gi|89055903|ref|YP_511354.1| NusB antitermination factor [Jannaschia sp. CCS1] gi|88865452|gb|ABD56329.1| NusB antitermination factor [Jannaschia sp. CCS1] Length = 165 Score = 157 bits (397), Expect = 6e-37, Method: Composition-based stats. Identities = 58/160 (36%), Positives = 88/160 (55%), Gaps = 10/160 (6%) Query: 2 TIQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVY 61 +D K+ + R ARL AVQAL+Q++ S E+ E+ET+RF A E D Sbjct: 13 PSRDEKRQM-----RSAARLYAVQALFQMEHSNQSLDEVRQEFETHRFGAVYEGDE---L 64 Query: 62 LHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSV 121 D FR + G ++R+ ID + L KW R+D L ++ RA EL+E + Sbjct: 65 AEGDPNLFRRTLEGAVERQALIDQMTDRALVAKWPIDRIDPTLRALFRAAGAELVEG-TA 123 Query: 122 PVEVIISEYVCIAHDFF-YGDEPKFINAVLDKVSRKEEIK 160 P +V+I+E+V +A FF G E KF+NAVLD ++R+ + + Sbjct: 124 PPKVVITEFVDVARAFFPEGKEAKFVNAVLDHMAREAKPE 163 >gi|160897907|ref|YP_001563489.1| NusB antitermination factor [Delftia acidovorans SPH-1] gi|238687189|sp|A9BVN7|NUSB_DELAS RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|160363491|gb|ABX35104.1| NusB antitermination factor [Delftia acidovorans SPH-1] Length = 212 Score = 157 bits (397), Expect = 7e-37, Method: Composition-based stats. Identities = 48/175 (27%), Positives = 81/175 (46%), Gaps = 19/175 (10%) Query: 1 MTIQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESV 60 +T +K S+ R AR A+QALYQ + G I RF D S Sbjct: 21 LTSTGARKAASKSN-RSRAREFALQALYQHLVGGNDVEAI------DRFTRDL-----SG 68 Query: 61 YLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHS 120 + D + ++ G ++ + +D LI+ L + + + I + + GV E C Sbjct: 69 FHKADSVHYDALLRGCINSQVDLDALIAPKLDR--TMAEISPIEHASMWIGVYEFQHCPD 126 Query: 121 VPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVS---RKEEIK--RSGCVSAITQ 170 VP V+++E + +A +F D K++NAVL+ ++ R E++ R+G SA Q Sbjct: 127 VPWRVVLNECIELAKEFGGTDGHKYVNAVLNGLAPTLRAAEVEHDRAGKGSAPAQ 181 >gi|238755140|ref|ZP_04616487.1| N utilization substance protein B [Yersinia ruckeri ATCC 29473] gi|238706700|gb|EEP99070.1| N utilization substance protein B [Yersinia ruckeri ATCC 29473] Length = 138 Score = 157 bits (397), Expect = 7e-37, Method: Composition-based stats. Identities = 36/134 (26%), Positives = 63/134 (47%), Gaps = 13/134 (9%) Query: 21 LAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRK 80 AVQA+Y + ++ ++ + + D VD+ +FR ++ GV Sbjct: 11 ECAVQAIYSWQLSKNDIADVELQFLSEQDVKD-----------VDITYFRELLSGVAVNV 59 Query: 81 QHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYG 140 +D ++ L+ + L + +ILR + EL + VP +V I+E + +A F Sbjct: 60 TALDASMAPYLSRQ--LEELGQVEKAILRLAIFELSKRDDVPYKVAINEAIELAKIFGAE 117 Query: 141 DEPKFINAVLDKVS 154 D KF+N VLDKV+ Sbjct: 118 DSHKFVNGVLDKVA 131 >gi|255263487|ref|ZP_05342829.1| transcription antitermination factor NusB [Thalassiobium sp. R2A62] gi|255105822|gb|EET48496.1| transcription antitermination factor NusB [Thalassiobium sp. R2A62] Length = 157 Score = 156 bits (396), Expect = 7e-37, Method: Composition-based stats. Identities = 55/157 (35%), Positives = 85/157 (54%), Gaps = 5/157 (3%) Query: 3 IQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYL 62 + D + R ARL A QALYQ+++ G + + E+ETYRF + D Sbjct: 1 MTDKPSGNQKRKMRSAARLFATQALYQMELSGQTVDAVRQEFETYRFGEVIDGDE---LA 57 Query: 63 HVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVP 122 D+E FR ++ ++ + ID + L KW+ R+D L ++ RA EL + S P Sbjct: 58 EGDVETFRDLLENAVNHQALIDQMTDRALVAKWAIDRIDPTLRALFRAAGAELTQS-STP 116 Query: 123 VEVIISEYVCIAHDFF-YGDEPKFINAVLDKVSRKEE 158 +V+I E+V +A FF G EPKF+NAVLD ++R+ + Sbjct: 117 PKVVIVEFVDVAVAFFPEGKEPKFVNAVLDHMAREAQ 153 >gi|89093481|ref|ZP_01166429.1| NusB protein [Oceanospirillum sp. MED92] gi|89082171|gb|EAR61395.1| NusB protein [Oceanospirillum sp. MED92] Length = 159 Score = 156 bits (396), Expect = 8e-37, Method: Composition-based stats. Identities = 46/160 (28%), Positives = 75/160 (46%), Gaps = 17/160 (10%) Query: 1 MTIQDNKKDLK----LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELD 56 M+ +NK K L+ +R AR A+QALY + G E+ +++ Sbjct: 1 MSENENKPAKKKKPSLTTQRRNARSYALQALYSWTLAGQPLNELEAQFR----------- 49 Query: 57 VESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELI 116 V++ D+ F ++H + K +D L + L LD I ++LR G EL Sbjct: 50 VDNDMRDTDIRLFSELLHSIAGGKSELDQLYTDFLDRN--VDELDPIELNVLRIGAYELS 107 Query: 117 ECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRK 156 + VP V I+E V +A F D K++N VLDK++++ Sbjct: 108 KRFEVPYRVAINESVELAKTFGATDSHKYVNGVLDKLAQR 147 >gi|83955701|ref|ZP_00964281.1| transcription antitermination factor NusB [Sulfitobacter sp. NAS-14.1] gi|83839995|gb|EAP79171.1| transcription antitermination factor NusB [Sulfitobacter sp. NAS-14.1] Length = 159 Score = 156 bits (396), Expect = 8e-37, Method: Composition-based stats. Identities = 50/162 (30%), Positives = 81/162 (50%), Gaps = 5/162 (3%) Query: 1 MTIQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESV 60 MT + + +RL AVQAL+Q++ S + E+ +RF A + Sbjct: 1 MTSSAGLSGNQKRKMKSASRLYAVQALFQMEHSSQSFDTVRKEFLEHRFGATYDGQE--- 57 Query: 61 YLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHS 120 + D+ F ++ ++ + ID + L KW+ +R+D L ++ RA EL Sbjct: 58 MIDGDIRHFADLLETAVNYQAAIDQMTDRALVAKWAIARIDPTLRALFRAAGAELR-AQE 116 Query: 121 VPVEVIISEYVCIAHDFF-YGDEPKFINAVLDKVSRKEEIKR 161 P V+I+EYV +A FF GDEPKF+NAVLD ++R+ + Sbjct: 117 TPPRVVINEYVDVARAFFEGGDEPKFVNAVLDHMAREARPEE 158 >gi|261405951|ref|YP_003242192.1| NusB antitermination factor [Paenibacillus sp. Y412MC10] gi|329924770|ref|ZP_08279759.1| transcription antitermination factor NusB [Paenibacillus sp. HGF5] gi|261282414|gb|ACX64385.1| NusB antitermination factor [Paenibacillus sp. Y412MC10] gi|328940435|gb|EGG36758.1| transcription antitermination factor NusB [Paenibacillus sp. HGF5] Length = 152 Score = 156 bits (396), Expect = 8e-37, Method: Composition-based stats. Identities = 38/144 (26%), Positives = 71/144 (49%), Gaps = 2/144 (1%) Query: 15 RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74 +R +AR VQ+LYQ+++ + E +S + + E + E+ +++ Sbjct: 2 KRRVAREIVVQSLYQMEMNEVDSMEAVSMLLSEA-AEENETERVIGDEVQMKEYVLQLVN 60 Query: 75 GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134 G + K ID L++ L + W SRL + ILR V EL VP +V ++E + ++ Sbjct: 61 GTWESKDSIDELLAHYL-KGWQVSRLSRVDRQILRLAVYELTYRDDVPGKVAVNEAIELS 119 Query: 135 HDFFYGDEPKFINAVLDKVSRKEE 158 F + KF+N VL ++ ++ + Sbjct: 120 KHFGTEESGKFVNGVLGRMIQELD 143 >gi|83941142|ref|ZP_00953604.1| transcription antitermination factor NusB [Sulfitobacter sp. EE-36] gi|83846962|gb|EAP84837.1| transcription antitermination factor NusB [Sulfitobacter sp. EE-36] Length = 159 Score = 156 bits (396), Expect = 8e-37, Method: Composition-based stats. Identities = 50/162 (30%), Positives = 81/162 (50%), Gaps = 5/162 (3%) Query: 1 MTIQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESV 60 MT + + +RL AVQAL+Q++ S + E+ +RF A + Sbjct: 1 MTSSAGLSGNQKRKMKSASRLYAVQALFQMEHSSQSFDTVRKEFLEHRFGASYDGQE--- 57 Query: 61 YLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHS 120 + D+ F ++ ++ + ID + L KW+ +R+D L ++ RA EL Sbjct: 58 MIDGDIRHFADLLETAVNYQAAIDQMTDRALVAKWAIARIDPTLRALFRAAGAELR-AQE 116 Query: 121 VPVEVIISEYVCIAHDFF-YGDEPKFINAVLDKVSRKEEIKR 161 P V+I+EYV +A FF GDEPKF+NAVLD ++R+ + Sbjct: 117 TPPRVVINEYVDVARAFFEGGDEPKFVNAVLDHMAREARPEE 158 >gi|254460442|ref|ZP_05073858.1| transcription antitermination factor NusB [Rhodobacterales bacterium HTCC2083] gi|206677031|gb|EDZ41518.1| transcription antitermination factor NusB [Rhodobacteraceae bacterium HTCC2083] Length = 157 Score = 156 bits (396), Expect = 9e-37, Method: Composition-based stats. Identities = 53/155 (34%), Positives = 87/155 (56%), Gaps = 10/155 (6%) Query: 5 DNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHV 64 + K+ +K AR AVQALYQ+++ G +T +II E+ +RF A E + ++ Sbjct: 8 NAKRKMK-----SAARFYAVQALYQMEVSGQTTDKIIVEFLDHRFGAVYE---DMEFVEG 59 Query: 65 DLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVE 124 D++ F +++ ++ + ID + L KW +R+D L + RA EL+ P + Sbjct: 60 DVDLFSSLVNDAVNHQAQIDQMTDRALVAKWPIARIDPTLRGLFRAAGAELV-ASDTPPK 118 Query: 125 VIISEYVCIAHDFF-YGDEPKFINAVLDKVSRKEE 158 V+I E+V IA FF G E +F+NAVLD V+R+ + Sbjct: 119 VVIKEFVDIAAAFFPEGKESRFVNAVLDHVAREAK 153 >gi|238765184|ref|ZP_04626116.1| N utilization substance protein B [Yersinia kristensenii ATCC 33638] gi|238696618|gb|EEP89403.1| N utilization substance protein B [Yersinia kristensenii ATCC 33638] Length = 138 Score = 156 bits (396), Expect = 9e-37, Method: Composition-based stats. Identities = 37/134 (27%), Positives = 63/134 (47%), Gaps = 13/134 (9%) Query: 21 LAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRK 80 AVQALY + ++ ++ + E VD+ +FR ++ GV Sbjct: 11 ECAVQALYSWQLSKNDIADVELQFLS-----------EQDVKDVDIAYFRELLSGVAVNA 59 Query: 81 QHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYG 140 +D L++ L+ + L + ++LR + EL + VP +V I+E + +A F Sbjct: 60 ASLDALMAPVLSRQ--LEELGQVERAVLRIALFELSKRDDVPYKVAINEAIELAKTFGAA 117 Query: 141 DEPKFINAVLDKVS 154 D KF+N VLDKV+ Sbjct: 118 DSHKFVNGVLDKVA 131 >gi|119474641|ref|ZP_01614994.1| transcription antitermination protein NusB [marine gamma proteobacterium HTCC2143] gi|119450844|gb|EAW32077.1| transcription antitermination protein NusB [marine gamma proteobacterium HTCC2143] Length = 158 Score = 156 bits (396), Expect = 9e-37, Method: Composition-based stats. Identities = 49/161 (30%), Positives = 78/161 (48%), Gaps = 17/161 (10%) Query: 5 DNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHV 64 NK++ + RR AR +QALYQ + + +I ++ + + V Sbjct: 6 SNKQEFNPAARR-KARHYGMQALYQWQMTKYAVKDIELQFLA-----------DYDFSQV 53 Query: 65 DLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVE 124 D+E+F I+H V + ++ + L + LD I S+LR G ELI+ +P + Sbjct: 54 DVEYFHDIVHHVPANLEELEAAFTPYLDR--AMGDLDPIELSLLRLGSYELIKRIDIPYK 111 Query: 125 VIISEYVCIAHDFFYGDEPKFINAVLDKVS---RKEEIKRS 162 V+I+E V +A F D K+IN VLDK++ R EIK Sbjct: 112 VVINEAVSLAKKFGATDGHKYINGVLDKLAAQVRTIEIKAQ 152 >gi|326793813|ref|YP_004311633.1| NusB antitermination factor [Marinomonas mediterranea MMB-1] gi|326544577|gb|ADZ89797.1| NusB antitermination factor [Marinomonas mediterranea MMB-1] Length = 162 Score = 156 bits (395), Expect = 9e-37, Method: Composition-based stats. Identities = 50/169 (29%), Positives = 80/169 (47%), Gaps = 20/169 (11%) Query: 2 TIQDNKKDLKLSHR--RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVES 59 + KK K S R +R A+QA+YQ + + EI +++ +E Sbjct: 7 SNTQPKKAKKPSRSQLRSASRGLALQAIYQWQMNHSAVNEIETQFT-----------LEQ 55 Query: 60 VYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECH 119 D +FR ++ GV + + +D L L + S LD I ++LR G EL Sbjct: 56 DMSACDKVYFRDLLQGVTAKAKELDSLFEELLDR--ALSELDAIELAVLRIGSYELAHRL 113 Query: 120 SVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVS---RKEEI--KRSG 163 VP V I+E V +A F + K++N +LDK++ R+EEI +R+G Sbjct: 114 DVPYRVAINESVELAKSFGASESHKYVNGILDKLAQRVRREEIAARRNG 162 >gi|326386550|ref|ZP_08208172.1| NusB antitermination factor [Novosphingobium nitrogenifigens DSM 19370] gi|326208865|gb|EGD59660.1| NusB antitermination factor [Novosphingobium nitrogenifigens DSM 19370] Length = 148 Score = 156 bits (395), Expect = 9e-37, Method: Composition-based stats. Identities = 53/144 (36%), Positives = 83/144 (57%), Gaps = 3/144 (2%) Query: 13 SHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVI 72 + R ARLAAVQALYQ+++ T ++ E+ +R + E + YL D+ +F + Sbjct: 6 AKARSAARLAAVQALYQLEMEQPELTTLLDEFHRHRLGREIE---DVEYLDADVAFFDDV 62 Query: 73 IHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVC 132 + GV+ R+ ID ++ L + WS SRLD + ILRAG EL+ + V +I EY+ Sbjct: 63 VKGVVARRDEIDAKLTERLAQGWSLSRLDKTMLQILRAGTYELLARSDIGVGTVIDEYLD 122 Query: 133 IAHDFFYGDEPKFINAVLDKVSRK 156 +AH FF E KF+N +LD +++ Sbjct: 123 VAHAFFDAREAKFVNGLLDALAKD 146 >gi|108757895|ref|YP_632923.1| transcription antitermination factor NusB [Myxococcus xanthus DK 1622] gi|119390787|sp|Q1D350|NUSB_MYXXD RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|108461775|gb|ABF86960.1| transcription antitermination factor NusB [Myxococcus xanthus DK 1622] Length = 140 Score = 156 bits (395), Expect = 9e-37, Method: Composition-based stats. Identities = 37/139 (26%), Positives = 67/139 (48%), Gaps = 8/139 (5%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 R R A+QALYQ+++ +T E + A + + + +++ R ++ G Sbjct: 4 RRTGRERALQALYQLEMATATTAEALE-------SAWSAAEESNKRDPDAVKFARELVEG 56 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135 V + ID LI + W R+ I ++LR G+ EL +P +V I+E V + Sbjct: 57 VQSHRDEIDQLIERH-SHNWRLDRMSRIDRNVLRLGIFELKYRPDIPRKVSINEAVELGK 115 Query: 136 DFFYGDEPKFINAVLDKVS 154 +F + F+N +LD+V+ Sbjct: 116 NFGNEESSAFVNGLLDRVA 134 >gi|300715571|ref|YP_003740374.1| N utilization substance protein B [Erwinia billingiae Eb661] gi|299061407|emb|CAX58517.1| N utilization substance protein B [Erwinia billingiae Eb661] Length = 139 Score = 156 bits (395), Expect = 9e-37, Method: Composition-based stats. Identities = 37/134 (27%), Positives = 62/134 (46%), Gaps = 13/134 (9%) Query: 21 LAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRK 80 AVQALY + +++ ++ E VD+ +FR ++ GV Sbjct: 11 ECAVQALYSWQLSKNDISDVEYQFLA-----------EQDVKDVDISYFRELLVGVATNS 59 Query: 81 QHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYG 140 ++D L+ L+ + L + +ILR + EL + VP +V I+E + +A F Sbjct: 60 AYLDGLMKPYLSRQ--LEELGQVEKAILRISLFELSKRADVPYKVAINEGIELAKVFGAE 117 Query: 141 DEPKFINAVLDKVS 154 D KF+N VLDK + Sbjct: 118 DSHKFVNGVLDKAA 131 >gi|89067938|ref|ZP_01155382.1| transcription antitermination factor NusB [Oceanicola granulosus HTCC2516] gi|89046536|gb|EAR52592.1| transcription antitermination factor NusB [Oceanicola granulosus HTCC2516] Length = 156 Score = 156 bits (395), Expect = 9e-37, Method: Composition-based stats. Identities = 57/161 (35%), Positives = 85/161 (52%), Gaps = 8/161 (4%) Query: 1 MTIQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESV 60 MT + K+ R +RL AVQAL+Q++ S +++E+E +RF A E E Sbjct: 1 MTTISGNQRRKM---RSASRLYAVQALFQMEAAQQSVDRVMAEFEDHRFGASYE---EGE 54 Query: 61 YLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHS 120 DLE FR + +D + ID + L KW +R+D L ++ RA E I Sbjct: 55 MAEGDLETFRALCETAVDNQAKIDQMTDRALVAKWPIARIDPTLRALFRAAGAEFI-RRD 113 Query: 121 VPVEVIISEYVCIAHDFF-YGDEPKFINAVLDKVSRKEEIK 160 P +V+I+E+V IA FF G EP F+NAVLD ++R+ + Sbjct: 114 TPPKVVITEFVDIARAFFPEGREPSFVNAVLDHMAREARPE 154 >gi|226942829|ref|YP_002797902.1| transcription antitermination protein NusB [Azotobacter vinelandii DJ] gi|226717756|gb|ACO76927.1| transcription antitermination factor NusB [Azotobacter vinelandii DJ] Length = 131 Score = 156 bits (395), Expect = 1e-36, Method: Composition-based stats. Identities = 41/136 (30%), Positives = 65/136 (47%), Gaps = 13/136 (9%) Query: 24 VQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHI 83 +QALYQ + G EI +++ V++ + VD +F I+HGV +K I Sbjct: 1 MQALYQWHVAGQPLNEIEAQFR-----------VDNDFSTVDGAYFHEILHGVPRQKTEI 49 Query: 84 DLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEP 143 D + L + +D + +ILR EL VP V+I+E + +A F D Sbjct: 50 DEAFAPLLDR--PLAEVDPVELAILRLSTYELSNRLDVPYRVVINEGIELAKVFGATDGH 107 Query: 144 KFINAVLDKVSRKEEI 159 KF+N VLDK++ + Sbjct: 108 KFVNGVLDKLAPRLRA 123 >gi|266618676|pdb|3IMQ|A Chain A, Crystal Structure Of The Nusb101-S10(Delta Loop) Complex gi|266618678|pdb|3IMQ|B Chain B, Crystal Structure Of The Nusb101-S10(Delta Loop) Complex gi|266618680|pdb|3IMQ|C Chain C, Crystal Structure Of The Nusb101-S10(Delta Loop) Complex Length = 141 Score = 156 bits (395), Expect = 1e-36, Method: Composition-based stats. Identities = 35/134 (26%), Positives = 60/134 (44%), Gaps = 13/134 (9%) Query: 21 LAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRK 80 AVQALY + ++ ++ E VD+ +FR ++ GV Sbjct: 13 ECAVQALYSWQLSQNDIADVEYQFLA-----------EQDVKDVDVLYFRELLAGVATNT 61 Query: 81 QHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYG 140 ++D L+ L+ L + ++LR + EL + VP +V I+E + +A F Sbjct: 62 AYLDGLMKPYLSR--LLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAE 119 Query: 141 DEPKFINAVLDKVS 154 + KF+N VLDK + Sbjct: 120 NSHKFVNGVLDKAA 133 >gi|260893142|ref|YP_003239239.1| NusB antitermination factor [Ammonifex degensii KC4] gi|260865283|gb|ACX52389.1| NusB antitermination factor [Ammonifex degensii KC4] Length = 155 Score = 156 bits (395), Expect = 1e-36, Method: Composition-based stats. Identities = 34/155 (21%), Positives = 69/155 (44%), Gaps = 12/155 (7%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 R AR AA+ L+Q+D+ G E + + E+ ++ G Sbjct: 3 RRRAREAALMVLFQVDVGGAVPEEALERTLAEWRLGN-----------ASREFATSLVLG 51 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135 + + ID +I L+++W R++ + +++R + EL+ +P V I+E V +A Sbjct: 52 TLAYRPQIDRVIEE-LSQRWRLERMNRVDRNVMRLALYELLFRQDIPPAVAINEAVELAK 110 Query: 136 DFFYGDEPKFINAVLDKVSRKEEIKRSGCVSAITQ 170 + + P+F+N +L KV+ + R + + Sbjct: 111 RYGGEESPRFVNGILGKVAENLSLYREKVIDPTAE 145 >gi|313901605|ref|ZP_07835044.1| NusB antitermination factor [Thermaerobacter subterraneus DSM 13965] gi|313468135|gb|EFR63610.1| NusB antitermination factor [Thermaerobacter subterraneus DSM 13965] Length = 214 Score = 156 bits (394), Expect = 1e-36, Method: Composition-based stats. Identities = 38/143 (26%), Positives = 61/143 (42%), Gaps = 14/143 (9%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 R R A+Q L+Q + G E ++ + E+ L + + G Sbjct: 13 RRRGREIALQVLFQWEAAGHPL-EAGLQWAAGEYNPGEEV----------LAFAADLAGG 61 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIE--CHSVPVEVIISEYVCI 133 V + ID LI+ W RL + +ILR G+ EL+ VP V I+E V + Sbjct: 62 VTRHRLDIDGLIARY-ARDWDLERLARVDRNILRLGIYELLYAGRPDVPPPVAINEAVEL 120 Query: 134 AHDFFYGDEPKFINAVLDKVSRK 156 A + D +FIN +L +++R Sbjct: 121 AKRYSSEDAARFINGILGQLARD 143 >gi|261417744|ref|YP_003251426.1| transcription antitermination protein NusB [Geobacillus sp. Y412MC61] gi|319767444|ref|YP_004132945.1| NusB antitermination factor [Geobacillus sp. Y412MC52] gi|261374201|gb|ACX76944.1| NusB antitermination factor [Geobacillus sp. Y412MC61] gi|317112310|gb|ADU94802.1| NusB antitermination factor [Geobacillus sp. Y412MC52] Length = 130 Score = 156 bits (394), Expect = 1e-36, Method: Composition-based stats. Identities = 41/139 (29%), Positives = 66/139 (47%), Gaps = 16/139 (11%) Query: 15 RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74 +R AR A+QAL+QID+ E + + ++D + R ++ Sbjct: 2 KRHEAREKALQALFQIDVGRIPPDEAL-----HNVTGGGDID----------PFLRQLVF 46 Query: 75 GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134 GV++ ++ ID L+ + L EKW+ R+ + +ILR E+ VPV V + E V +A Sbjct: 47 GVVEHQEEIDELLRANL-EKWTLERVANVDRAILRMATYEMKYADDVPVSVSLDEAVELA 105 Query: 135 HDFFYGDEPKFINAVLDKV 153 F F+N VL KV Sbjct: 106 KTFGDWKSGSFVNGVLSKV 124 >gi|194016988|ref|ZP_03055601.1| transcription antitermination factor NusB [Bacillus pumilus ATCC 7061] gi|194011594|gb|EDW21163.1| transcription antitermination factor NusB [Bacillus pumilus ATCC 7061] Length = 131 Score = 156 bits (394), Expect = 1e-36, Method: Composition-based stats. Identities = 39/148 (26%), Positives = 68/148 (45%), Gaps = 18/148 (12%) Query: 15 RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74 +R AR A+Q L+QID+ E I+ + +F ++ Sbjct: 2 KRRTAREKALQTLFQIDVSNIDPKEAITHALDEQESD---------------PFFEELVF 46 Query: 75 GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134 GV+++K +D +IS L W R+ + +ILR V E++ +PV V ++E + +A Sbjct: 47 GVLEQKDKLDDMISQHLV-NWKLDRIANVDRAILRLSVYEMVYQEDIPVSVSMNEAIELA 105 Query: 135 HDFFYGDEPKFINAVLDKVSRKEEIKRS 162 F KF+N VL + K ++K+ Sbjct: 106 KLFGDDKASKFVNGVLSNI--KNDLKQQ 131 >gi|160872402|ref|ZP_02062534.1| transcription antitermination factor NusB [Rickettsiella grylli] gi|159121201|gb|EDP46539.1| transcription antitermination factor NusB [Rickettsiella grylli] Length = 148 Score = 155 bits (393), Expect = 2e-36, Method: Composition-based stats. Identities = 41/159 (25%), Positives = 77/159 (48%), Gaps = 16/159 (10%) Query: 1 MTIQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESV 60 MT + K + K R AR AVQA+YQ + + + I +++ + Sbjct: 1 MTQKSKKNNFKAKQR---ARRFAVQAIYQWQLTQETFSVIQTKFLA-----------QEE 46 Query: 61 YLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHS 120 VD +F +I+ G+++ + +D + S + +LD + +ILR G EL+ C Sbjct: 47 MKSVDTAYFTLIVQGILNDHELLDRYLQSFVDR--PLCQLDCVEWAILRLGTYELLNCSE 104 Query: 121 VPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEI 159 +P +VI++E + +A F D K++N +L +++ K Sbjct: 105 IPYKVILNEAIELAKMFGATDSYKYVNGILHRIAEKNRA 143 >gi|94500355|ref|ZP_01306887.1| transcription antitermination protein NusB [Oceanobacter sp. RED65] gi|94427390|gb|EAT12368.1| transcription antitermination protein NusB [Oceanobacter sp. RED65] Length = 128 Score = 155 bits (393), Expect = 2e-36, Method: Composition-based stats. Identities = 42/136 (30%), Positives = 68/136 (50%), Gaps = 13/136 (9%) Query: 24 VQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHI 83 +QALYQ D+ G S + I +E+ T ++ VD E+FR I+ GV + Sbjct: 1 MQALYQWDLAGASLSNIEAEFLT-----------DNDMSKVDTEYFRDILRGVPRELDDL 49 Query: 84 DLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEP 143 D ++ CL+ + + +ILR G EL+ VP V+I+E V ++ F + Sbjct: 50 DEKLAPCLSRN--MQEVTPVERAILRLGAYELLHRIDVPYRVVINESVELSKKFGANESH 107 Query: 144 KFINAVLDKVSRKEEI 159 KFIN LDK+++ + Sbjct: 108 KFINGALDKLAQAVRV 123 >gi|302541095|ref|ZP_07293437.1| transcription antitermination factor NusB [Streptomyces hygroscopicus ATCC 53653] gi|302458713|gb|EFL21806.1| transcription antitermination factor NusB [Streptomyces himastatinicus ATCC 53653] Length = 152 Score = 155 bits (393), Expect = 2e-36, Method: Composition-based stats. Identities = 36/138 (26%), Positives = 66/138 (47%), Gaps = 9/138 (6%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 R AR A Q L++ D G S +++++ + D + V E+ ++ G Sbjct: 4 RNKARKRAFQILFEADQRGSSVQTVLADWIRHARTDDRQPPVS--------EYTMQLVEG 55 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135 + ID L+++ W+ R+ ++ +ILR G EL+ + P V+I E V +A Sbjct: 56 YAEHTARIDELLATYAV-GWTLDRMPVVDRNILRLGAYELVWEDATPDAVVIDEAVQLAK 114 Query: 136 DFFYGDEPKFINAVLDKV 153 +F D P F+N +L ++ Sbjct: 115 EFSTDDSPSFVNGLLGRL 132 >gi|291613126|ref|YP_003523283.1| NusB antitermination factor [Sideroxydans lithotrophicus ES-1] gi|291583238|gb|ADE10896.1| NusB antitermination factor [Sideroxydans lithotrophicus ES-1] Length = 150 Score = 155 bits (393), Expect = 2e-36, Method: Composition-based stats. Identities = 41/157 (26%), Positives = 65/157 (41%), Gaps = 13/157 (8%) Query: 3 IQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYL 62 + D K R AR A+Q +Y+ + G + I + E Sbjct: 1 MSDAKHSNPAKSMRHRARELAMQGVYEWRLSGKNAKLI-----------ENGTRDEKSLG 49 Query: 63 HVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVP 122 D E+F +++G + + + I+ L K L + S+L G ELI VP Sbjct: 50 RYDTEFFGQLLNGAIAHHEALSAQIAPHLDRK--LDELSPVEYSVLLLGAYELIHHPEVP 107 Query: 123 VEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEI 159 V+I+E V +A F D KF+N VLDK++ + Sbjct: 108 YRVVINEAVELAKTFGGSDGHKFVNGVLDKLAAEVRA 144 >gi|91203372|emb|CAJ71025.1| unknown protein [Candidatus Kuenenia stuttgartiensis] Length = 422 Score = 155 bits (393), Expect = 2e-36, Method: Composition-based stats. Identities = 42/140 (30%), Positives = 67/140 (47%), Gaps = 12/140 (8%) Query: 14 HRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVII 73 R IAR A++ALYQ+D++G I E+ ++ ++ +++ Sbjct: 2 RNRTIARELAIKALYQLDLLGDKAETEIDEFCR-----------QNAEKPDIYKFALLLV 50 Query: 74 HGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCI 133 G + ID IS E W R+ +I +ILR GV EL+ +P +V I+E + + Sbjct: 51 TGCRSHVKEIDERIS-LSAENWDLHRMAVIDKNILRLGVYELLYRDDIPPKVSINEAIEL 109 Query: 134 AHDFFYGDEPKFINAVLDKV 153 A F D F+N +LDKV Sbjct: 110 AKKFGDKDSGMFVNGILDKV 129 >gi|171059618|ref|YP_001791967.1| NusB antitermination factor [Leptothrix cholodnii SP-6] gi|170777063|gb|ACB35202.1| NusB antitermination factor [Leptothrix cholodnii SP-6] Length = 171 Score = 155 bits (393), Expect = 2e-36, Method: Composition-based stats. Identities = 33/145 (22%), Positives = 60/145 (41%), Gaps = 13/145 (8%) Query: 10 LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF 69 + R +R A+Q LY+ + + + + + + + D F Sbjct: 24 PRPKSARRRSRELALQGLYEWQVGQADSHVVEA-----------HMREQEDHAKCDTAHF 72 Query: 70 RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISE 129 ++HG + + +D +++ L L + +L G EL C VP +V I+E Sbjct: 73 SALLHGCIAQVAALDAVLTPHLDR--RVQELSPVEHGVLLIGAYELQHCLDVPYKVAINE 130 Query: 130 YVCIAHDFFYGDEPKFINAVLDKVS 154 V +A F D K++N VLDK + Sbjct: 131 AVELAKSFGGTDGHKYVNGVLDKAA 155 >gi|56420932|ref|YP_148250.1| transcription antitermination protein NusB [Geobacillus kaustophilus HTA426] gi|297529436|ref|YP_003670711.1| NusB antitermination factor [Geobacillus sp. C56-T3] gi|81557844|sp|Q5KXA4|NUSB_GEOKA RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|56380774|dbj|BAD76682.1| transcription termination factor [Geobacillus kaustophilus HTA426] gi|297252688|gb|ADI26134.1| NusB antitermination factor [Geobacillus sp. C56-T3] Length = 130 Score = 155 bits (393), Expect = 2e-36, Method: Composition-based stats. Identities = 41/139 (29%), Positives = 66/139 (47%), Gaps = 16/139 (11%) Query: 15 RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74 +R AR A+QAL+QID+ E + + ++D + R ++ Sbjct: 2 KRHEAREKALQALFQIDVGRIPPDEAL-----HNVTGGGDID----------PFLRQLVF 46 Query: 75 GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134 GV++ ++ ID L+ + L EKW+ R+ + +ILR E+ VPV V + E V +A Sbjct: 47 GVVEHQEEIDELLRANL-EKWTLERVANVDRAILRMATYEMKYADDVPVSVSLDEAVELA 105 Query: 135 HDFFYGDEPKFINAVLDKV 153 F F+N VL KV Sbjct: 106 KKFGDWKSGSFVNGVLSKV 124 >gi|239827671|ref|YP_002950295.1| transcription antitermination protein NusB [Geobacillus sp. WCH70] gi|239807964|gb|ACS25029.1| NusB antitermination factor [Geobacillus sp. WCH70] Length = 133 Score = 155 bits (392), Expect = 2e-36, Method: Composition-based stats. Identities = 42/147 (28%), Positives = 68/147 (46%), Gaps = 16/147 (10%) Query: 15 RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74 +R AR A+QAL+Q+D+ E + E+D + R ++ Sbjct: 3 KRHEAREKALQALFQVDVGHIPPEEALQ-----NVTGGKEVD----------PFLRQLVI 47 Query: 75 GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134 GV + ++ ID L+ + L EKW+ R+ + +ILR E+ VPV+V + E V +A Sbjct: 48 GVTEHQEEIDALLRANL-EKWTLERVANVDRAILRMATYEMKYVDDVPVKVSLDEAVELA 106 Query: 135 HDFFYGDEPKFINAVLDKVSRKEEIKR 161 F +F+N VL KV I+ Sbjct: 107 KKFGDTKSGRFVNGVLSKVKDALHIQE 133 >gi|110679100|ref|YP_682107.1| N utilization substance protein B-like protein, putative [Roseobacter denitrificans OCh 114] gi|109455216|gb|ABG31421.1| N utilization substance protein B-like protein, putative [Roseobacter denitrificans OCh 114] Length = 145 Score = 155 bits (392), Expect = 2e-36, Method: Composition-based stats. Identities = 48/144 (33%), Positives = 74/144 (51%), Gaps = 5/144 (3%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 + ARL AVQAL+Q++ G + + E+ +RF + L D++ F +I G Sbjct: 2 KSAARLYAVQALFQMEHSGQTIEAVRREFLDHRFGETYDGQE---MLDGDVDLFGAVIEG 58 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135 ++ + ID + L KW R+D L ++ RA EL P +V+ISEYV +A Sbjct: 59 AVNYQAPIDQMTDRALVAKWPLGRIDPTLRALFRAAGAEL-NGKDTPPKVVISEYVDVAR 117 Query: 136 DFFYG-DEPKFINAVLDKVSRKEE 158 FF EPK +N VLD ++R+ Sbjct: 118 AFFEDGKEPKLVNGVLDHMAREAR 141 >gi|332297436|ref|YP_004439358.1| NusB antitermination factor [Treponema brennaborense DSM 12168] gi|332180539|gb|AEE16227.1| NusB antitermination factor [Treponema brennaborense DSM 12168] Length = 138 Score = 155 bits (392), Expect = 2e-36, Method: Composition-based stats. Identities = 44/141 (31%), Positives = 71/141 (50%), Gaps = 8/141 (5%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 R R+ A QAL+ D+ G S E+++ E DV + L + R++I G Sbjct: 3 RRKGRILAFQALFSWDVGGMSVDELLA-------FPWMEADVLAKTDEGSLSFARLLIAG 55 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135 ++ ID LI + L W F R++ + ++LR V L+ H + ++I E + IA Sbjct: 56 TIEHIDEIDSLIKAHLD-SWDFERINKVDLAVLRISVYPLLYQHDIHPSIVIDEAIDIAK 114 Query: 136 DFFYGDEPKFINAVLDKVSRK 156 +F GD +FINAVLD + + Sbjct: 115 EFGSGDSFRFINAVLDNIRKD 135 >gi|218549924|ref|YP_002383715.1| transcription antitermination protein NusB [Escherichia fergusonii ATCC 35469] gi|226738904|sp|B7LMH1|NUSB_ESCF3 RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|218357465|emb|CAQ90104.1| transcription antitermination protein [Escherichia fergusonii ATCC 35469] gi|324114635|gb|EGC08603.1| transcription antitermination protein NusB [Escherichia fergusonii B253] gi|325498301|gb|EGC96160.1| transcription antitermination protein NusB [Escherichia fergusonii ECD227] Length = 139 Score = 155 bits (392), Expect = 2e-36, Method: Composition-based stats. Identities = 36/134 (26%), Positives = 61/134 (45%), Gaps = 13/134 (9%) Query: 21 LAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRK 80 AVQALY + ++ ++ + D VD+ +FR ++ GV Sbjct: 11 ECAVQALYSWQLSRNDIADVEYQFLAEQDVKD-----------VDVLYFRELLAGVATNT 59 Query: 81 QHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYG 140 ++D L+ L+ L + ++LR + EL + VP +V I+E + +A F Sbjct: 60 AYLDGLMKPYLSR--LLEELGQVEKAVLRIALFELSKRSDVPYKVAINEAIELAKTFGAE 117 Query: 141 DEPKFINAVLDKVS 154 D KF+N VLDK + Sbjct: 118 DSHKFVNGVLDKAA 131 >gi|297195528|ref|ZP_06912926.1| transcription antitermination protein NusB [Streptomyces pristinaespiralis ATCC 25486] gi|297152834|gb|EFH32015.1| transcription antitermination protein NusB [Streptomyces pristinaespiralis ATCC 25486] Length = 142 Score = 155 bits (392), Expect = 3e-36, Method: Composition-based stats. Identities = 34/138 (24%), Positives = 64/138 (46%), Gaps = 9/138 (6%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 R AR A Q L++ D G + +++++ + + + V E+ ++ G Sbjct: 4 RNKARKRAFQILFEADQRGATVHTVLADWVRHARTDERQPPV--------AEYTMDLVEG 55 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135 + ID LI++ W+ R+ ++ +ILR G EL+ P V+I E V +A Sbjct: 56 YAEHADRIDELIATYAV-GWTIDRMPVVDRNILRLGAYELVWKDETPDAVVIDEAVQLAK 114 Query: 136 DFFYGDEPKFINAVLDKV 153 +F + P F+N +L + Sbjct: 115 EFSTDESPAFVNGLLGRF 132 >gi|152976586|ref|YP_001376103.1| transcription antitermination protein NusB [Bacillus cereus subsp. cytotoxis NVH 391-98] gi|189035878|sp|A7GSK0|NUSB_BACCN RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|152025338|gb|ABS23108.1| NusB antitermination factor [Bacillus cytotoxicus NVH 391-98] Length = 130 Score = 155 bits (392), Expect = 3e-36, Method: Composition-based stats. Identities = 42/139 (30%), Positives = 64/139 (46%), Gaps = 14/139 (10%) Query: 15 RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74 +R AR A+QALYQ+DI G ++ E E + ++ Sbjct: 2 KRRTARERAMQALYQMDITGELNPKVAVENTLDEGEETNE-------------FLDSLVG 48 Query: 75 GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134 G ++ K+ ID LI L +KW R+ ++ SILR V E+ +P V I+E + IA Sbjct: 49 GFVEHKETIDELIRQNL-KKWKLERISIVDRSILRLAVYEMKYMEEIPHNVTINEAIEIA 107 Query: 135 HDFFYGDEPKFINAVLDKV 153 F + +FIN VL + Sbjct: 108 KTFGDEESRRFINGVLSNI 126 >gi|209964638|ref|YP_002297553.1| transcription antitermination protein NusB, putative [Rhodospirillum centenum SW] gi|209958104|gb|ACI98740.1| transcription antitermination protein NusB, putative [Rhodospirillum centenum SW] Length = 179 Score = 154 bits (391), Expect = 3e-36, Method: Composition-based stats. Identities = 48/138 (34%), Positives = 79/138 (57%), Gaps = 3/138 (2%) Query: 24 VQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHI 83 VQALYQI++ G + I E+ +R + + D Y+ D + F I+ GVM R+ + Sbjct: 37 VQALYQIELGGTPSETAIGEFVRHRLGQEIDGD---RYVSADPQLFADIVRGVMARQADV 93 Query: 84 DLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEP 143 D L++ L +W R++ IL +ILRAG EL+ V ++I++Y+ + H FF G EP Sbjct: 94 DQLVTGVLDRQWGLDRMEPILRAILRAGAWELLGNTGVAPHIVINDYIDVGHAFFAGREP 153 Query: 144 KFINAVLDKVSRKEEIKR 161 +N VLD+++R+ + Sbjct: 154 GMVNGVLDRIARQLRPEE 171 >gi|90415724|ref|ZP_01223658.1| transcription antitermination protein NusB [marine gamma proteobacterium HTCC2207] gi|90333047|gb|EAS48217.1| transcription antitermination protein NusB [marine gamma proteobacterium HTCC2207] Length = 146 Score = 154 bits (391), Expect = 3e-36, Method: Composition-based stats. Identities = 43/145 (29%), Positives = 64/145 (44%), Gaps = 13/145 (8%) Query: 10 LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF 69 + R AR VQALY D+ +I +E+ V++ VD E F Sbjct: 1 MSKPKMRQKARRLLVQALYSWDMGKTDLIDIEAEFH-----------VDNNMATVDTELF 49 Query: 70 RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISE 129 I+ GV ID L +LD + +ILR E++ VP +V+I+E Sbjct: 50 HEILFGVPKHMTEIDAAYEPYLDR--DQDQLDPVSQAILRLSTYEMLHRIDVPYKVVINE 107 Query: 130 YVCIAHDFFYGDEPKFINAVLDKVS 154 V +A F D K+IN +LD+V+ Sbjct: 108 GVNLAKTFGPTDAFKYINGILDRVA 132 >gi|270157438|ref|ZP_06186095.1| transcription antitermination factor NusB [Legionella longbeachae D-4968] gi|289164170|ref|YP_003454308.1| N utilization substance protein B homolog [Legionella longbeachae NSW150] gi|269989463|gb|EEZ95717.1| transcription antitermination factor NusB [Legionella longbeachae D-4968] gi|288857343|emb|CBJ11171.1| putative N utilization substance protein B homolog [Legionella longbeachae NSW150] Length = 147 Score = 154 bits (391), Expect = 3e-36, Method: Composition-based stats. Identities = 38/141 (26%), Positives = 73/141 (51%), Gaps = 13/141 (9%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 + AR A+QALYQ + G EI +++ V + VD+++F ++HG Sbjct: 9 KRKARKLALQALYQWLMAGTEVCEIEAQFR-----------VINKMDKVDVDYFCRLLHG 57 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135 V + ++ I+ L + S L+ I ++LR G EL+ C +P +V++ E + + Sbjct: 58 VPEHVASLETSITPFLDRE--ISALNPIELTVLRLGSFELLYCPEIPYKVVLDEAISLTK 115 Query: 136 DFFYGDEPKFINAVLDKVSRK 156 +F D +++N VL+ ++R+ Sbjct: 116 EFGSQDGYRYVNGVLNNLARQ 136 >gi|108799326|ref|YP_639523.1| transcription antitermination protein NusB [Mycobacterium sp. MCS] gi|119868442|ref|YP_938394.1| transcription antitermination protein NusB [Mycobacterium sp. KMS] gi|126434984|ref|YP_001070675.1| transcription antitermination protein NusB [Mycobacterium sp. JLS] gi|119390786|sp|Q1B9G7|NUSB_MYCSS RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|166215699|sp|A3PZ57|NUSB_MYCSJ RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|166215700|sp|A1UFJ6|NUSB_MYCSK RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|108769745|gb|ABG08467.1| NusB antitermination factor [Mycobacterium sp. MCS] gi|119694531|gb|ABL91604.1| NusB antitermination factor [Mycobacterium sp. KMS] gi|126234784|gb|ABN98184.1| NusB antitermination factor [Mycobacterium sp. JLS] Length = 162 Score = 154 bits (391), Expect = 3e-36, Method: Composition-based stats. Identities = 45/145 (31%), Positives = 69/145 (47%), Gaps = 9/145 (6%) Query: 9 DLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEW 68 D + R AR AV L++ + G + E+ + + A T+ DV ++ + Sbjct: 3 DRRPDRGRHQARKRAVDLLFEAEARGLTAAEVAT---SRNKLAGTQPDVTALN-----PY 54 Query: 69 FRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIIS 128 + GV D + HID LIS+ L + W+ RL + +ILR V EL+ VP V + Sbjct: 55 TVTVARGVTDHRDHIDDLISAHL-QGWTLDRLPAVDRAILRVAVWELLHAEDVPEPVAVD 113 Query: 129 EYVCIAHDFFYGDEPKFINAVLDKV 153 E V +A D P F+N VL +V Sbjct: 114 EAVELAKQLSTDDSPGFVNGVLGQV 138 >gi|294501203|ref|YP_003564903.1| transcription antitermination factor NusB [Bacillus megaterium QM B1551] gi|295706550|ref|YP_003599625.1| transcription antitermination factor NusB [Bacillus megaterium DSM 319] gi|294351140|gb|ADE71469.1| transcription antitermination factor NusB [Bacillus megaterium QM B1551] gi|294804209|gb|ADF41275.1| transcription antitermination factor NusB [Bacillus megaterium DSM 319] Length = 130 Score = 154 bits (391), Expect = 3e-36, Method: Composition-based stats. Identities = 41/139 (29%), Positives = 63/139 (45%), Gaps = 16/139 (11%) Query: 15 RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74 +R AR A+QAL+Q D+ E I V ++ ++ Sbjct: 2 KRHTARQKALQALFQHDLGQTEPMEAI---------------GNVVQNEKSDQFLESLVL 46 Query: 75 GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134 GV++ +Q ID L+ + L EKW+ R+ + ILR V E+ +P V ++E + +A Sbjct: 47 GVVEHQQEIDELLRNHL-EKWTLDRVATVDRVILRIAVYEMKYEEEIPTSVTLNEAIELA 105 Query: 135 HDFFYGDEPKFINAVLDKV 153 F KFIN VL KV Sbjct: 106 KTFGDDQSSKFINGVLSKV 124 >gi|84502770|ref|ZP_01000889.1| transcription antitermination factor NusB [Oceanicola batsensis HTCC2597] gi|84389165|gb|EAQ01963.1| transcription antitermination factor NusB [Oceanicola batsensis HTCC2597] Length = 166 Score = 154 bits (390), Expect = 4e-36, Method: Composition-based stats. Identities = 55/156 (35%), Positives = 87/156 (55%), Gaps = 8/156 (5%) Query: 9 DLKLSHRR---GIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVD 65 L + RR +RL AVQAL+Q++ IG + +I+E+E +RF A E D D Sbjct: 13 PLSGNQRRKMKSASRLYAVQALFQMEAIGQTVERVIAEFEDHRFGAVYEGDE---MAEGD 69 Query: 66 LEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEV 125 ++ FR + ++ + ID + L KW +R+D L ++ RA EL++ P +V Sbjct: 70 IDLFRATMADAVNYQARIDQMTDRALVAKWPIARIDPTLRALFRAAGAELVQS-DTPPKV 128 Query: 126 IISEYVCIAHDFF-YGDEPKFINAVLDKVSRKEEIK 160 +I EYV +A FF G EP+F+NAVLD ++R+ + Sbjct: 129 VIKEYVDVASAFFPEGREPRFVNAVLDHMAREARPE 164 >gi|86159160|ref|YP_465945.1| NusB antitermination factor [Anaeromyxobacter dehalogenans 2CP-C] gi|197123232|ref|YP_002135183.1| NusB antitermination factor [Anaeromyxobacter sp. K] gi|220918021|ref|YP_002493325.1| NusB antitermination factor [Anaeromyxobacter dehalogenans 2CP-1] gi|119372275|sp|Q2ILH8|NUSB_ANADE RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|238689890|sp|B4UIM1|NUSB_ANASK RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|254772609|sp|B8JEW3|NUSB_ANAD2 RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|85775671|gb|ABC82508.1| NusB antitermination factor [Anaeromyxobacter dehalogenans 2CP-C] gi|196173081|gb|ACG74054.1| NusB antitermination factor [Anaeromyxobacter sp. K] gi|219955875|gb|ACL66259.1| NusB antitermination factor [Anaeromyxobacter dehalogenans 2CP-1] Length = 142 Score = 154 bits (390), Expect = 4e-36, Method: Composition-based stats. Identities = 40/153 (26%), Positives = 71/153 (46%), Gaps = 12/153 (7%) Query: 12 LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71 ++ RR AR A+QALYQID+ + +S + + E+ ++ Sbjct: 1 MTSRRTRARERALQALYQIDVAAEGIDDALSRFWKSFEPVEREV----------MDLAEG 50 Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131 ++ GV ++ +D I ++ W R+ + ++LR V EL+ VPV+V+I+E + Sbjct: 51 LVRGVAQHRRAVDEAI-EAVSTNWRLDRMAKVDRNVLRLAVFELL-RTDVPVKVVINEAI 108 Query: 132 CIAHDFFYGDEPKFINAVLDKVSRKEEIKRSGC 164 + + F+N VLDKV+ R G Sbjct: 109 ELGKKYGSESSGAFVNGVLDKVASGLPPARRGE 141 >gi|307326792|ref|ZP_07605984.1| NusB antitermination factor [Streptomyces violaceusniger Tu 4113] gi|306887555|gb|EFN18549.1| NusB antitermination factor [Streptomyces violaceusniger Tu 4113] Length = 150 Score = 154 bits (389), Expect = 5e-36, Method: Composition-based stats. Identities = 36/138 (26%), Positives = 63/138 (45%), Gaps = 9/138 (6%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 R AR A Q L++ D G + +++++ D + V E+ ++ G Sbjct: 4 RNKARKRAFQILFEADQRGATVQIVLADWIRLARTDDRQPPVS--------EYTMQLVEG 55 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135 ID LI++ W+ R+ ++ +ILR G EL+ P V+I E V +A Sbjct: 56 YAQHIDRIDELIATYAV-GWTLDRMPVVDRNILRLGAYELVWEDETPDAVVIDEAVQLAK 114 Query: 136 DFFYGDEPKFINAVLDKV 153 +F D P F+N +L ++ Sbjct: 115 EFSTDDSPAFVNGLLGRI 132 >gi|308371048|ref|ZP_07667079.1| putative transcription antitermination factor NusB [Mycobacterium tuberculosis SUMu003] gi|308373441|ref|ZP_07667582.1| putative transcription antitermination factor NusB [Mycobacterium tuberculosis SUMu005] gi|308377044|ref|ZP_07668414.1| putative transcription antitermination factor NusB [Mycobacterium tuberculosis SUMu008] gi|308378420|ref|ZP_07668745.1| putative transcription antitermination factor NusB [Mycobacterium tuberculosis SUMu009] gi|308405376|ref|ZP_07669465.1| putative transcription antitermination factor NusB [Mycobacterium tuberculosis SUMu012] gi|308330008|gb|EFP18859.1| putative transcription antitermination factor NusB [Mycobacterium tuberculosis SUMu003] gi|308337652|gb|EFP26503.1| putative transcription antitermination factor NusB [Mycobacterium tuberculosis SUMu005] gi|308349124|gb|EFP37975.1| putative transcription antitermination factor NusB [Mycobacterium tuberculosis SUMu008] gi|308352601|gb|EFP41452.1| putative transcription antitermination factor NusB [Mycobacterium tuberculosis SUMu009] gi|308365233|gb|EFP54084.1| putative transcription antitermination factor NusB [Mycobacterium tuberculosis SUMu012] Length = 249 Score = 154 bits (389), Expect = 5e-36, Method: Composition-based stats. Identities = 44/145 (30%), Positives = 70/145 (48%), Gaps = 9/145 (6%) Query: 9 DLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEW 68 D K R AR AV L++ ++ G S E++ T A+ + D+ ++ + Sbjct: 3 DRKPVRGRHQARKRAVALLFEAEVRGISAAEVVD---TRAALAEAKPDIARLH-----PY 54 Query: 69 FRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIIS 128 + GV + HID LI++ L W+ RL + +ILR V EL+ VP V++ Sbjct: 55 TAAVARGVSEHAAHIDDLITAHL-RGWTLDRLPAVDRAILRVSVWELLHAADVPEPVVVD 113 Query: 129 EYVCIAHDFFYGDEPKFINAVLDKV 153 E V +A + D P F+N VL +V Sbjct: 114 EAVQLAKELSTDDSPGFVNGVLGQV 138 >gi|15639999|ref|NP_219452.1| transcription antitermination protein NusB [Treponema pallidum subsp. pallidum str. Nichols] gi|189026238|ref|YP_001934010.1| transcription antitermination protein NusB [Treponema pallidum subsp. pallidum SS14] gi|7387973|sp|O83979|NUSB_TREPA RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|238689355|sp|B2S4Q2|NUSB_TREPS RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|3323342|gb|AAC65965.1| N utilization substance protein B (nusB) [Treponema pallidum subsp. pallidum str. Nichols] gi|189018813|gb|ACD71431.1| N utilization substance protein B [Treponema pallidum subsp. pallidum SS14] gi|291060372|gb|ADD73107.1| transcription antitermination factor NusB [Treponema pallidum subsp. pallidum str. Chicago] Length = 141 Score = 154 bits (389), Expect = 5e-36, Method: Composition-based stats. Identities = 44/140 (31%), Positives = 69/140 (49%), Gaps = 10/140 (7%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 R AR+ A QAL+ D G + E ++++ R DL + R++ G Sbjct: 10 RRRARILAFQALFAWDAAGITP-ETLTQFTWLRR--------NPPPSTQDLGFSRLLFLG 60 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135 ++ + ID +SS L E W F RL+ + +ILR L+ +P V+I E V IA Sbjct: 61 TLEHLREIDGCVSSRL-EHWDFVRLNKVDKAILRLSAYSLLFQKDIPPVVVIHEAVSIAR 119 Query: 136 DFFYGDEPKFINAVLDKVSR 155 DF D +F+N VLD +++ Sbjct: 120 DFGTDDSFRFVNGVLDNIAK 139 >gi|221135088|ref|ZP_03561391.1| transcription antitermination protein NusB [Glaciecola sp. HTCC2999] Length = 145 Score = 154 bits (389), Expect = 5e-36, Method: Composition-based stats. Identities = 39/150 (26%), Positives = 68/150 (45%), Gaps = 14/150 (9%) Query: 6 NKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVD 65 ++ +K + RR AR A+Q +Y + G + + + L + +D Sbjct: 2 SEAKMKPAARR-KARELALQGIYSWQMNGNTIESV-----------ELHLATTNDMSKID 49 Query: 66 LEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEV 125 L +F+ ++ + +D+ I L LD I +ILR LEL + VP +V Sbjct: 50 LAFFQELLRDTAKKVVELDVAIKPYLGR--LPEELDPIEKAILRLATLELTQRIDVPYKV 107 Query: 126 IISEYVCIAHDFFYGDEPKFINAVLDKVSR 155 +I+E + +A F + KF+N VLDK + Sbjct: 108 VINEAIELAKSFGAEESHKFVNGVLDKAVK 137 >gi|254488295|ref|ZP_05101500.1| transcription antitermination factor NusB [Roseobacter sp. GAI101] gi|214045164|gb|EEB85802.1| transcription antitermination factor NusB [Roseobacter sp. GAI101] Length = 159 Score = 154 bits (389), Expect = 5e-36, Method: Composition-based stats. Identities = 50/161 (31%), Positives = 84/161 (52%), Gaps = 5/161 (3%) Query: 1 MTIQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESV 60 MT + + +RL AVQAL+Q++ S + +E+ +RF A + + Sbjct: 1 MTSTAGLSGNQKRKMKSASRLYAVQALFQMEHSSQSFDTVRTEFLEHRFGATYDG---AE 57 Query: 61 YLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHS 120 + D+ F ++ ++ + ID + L KW +R+D L ++ RA EL + Sbjct: 58 MIDGDIRHFADVLETAVNYQAAIDQMTDRALVAKWPIARIDPTLRALFRAAGAELRDTG- 116 Query: 121 VPVEVIISEYVCIAHDFFYG-DEPKFINAVLDKVSRKEEIK 160 P +V+I+EYV +A FF G DEPKF+NAVLD ++R+ + Sbjct: 117 TPPKVVITEYVDVARAFFEGSDEPKFVNAVLDHMAREARPE 157 >gi|89099252|ref|ZP_01172130.1| transcription antitermination protein NusB [Bacillus sp. NRRL B-14911] gi|89086098|gb|EAR65221.1| transcription antitermination protein NusB [Bacillus sp. NRRL B-14911] Length = 130 Score = 153 bits (388), Expect = 6e-36, Method: Composition-based stats. Identities = 47/139 (33%), Positives = 66/139 (47%), Gaps = 16/139 (11%) Query: 15 RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74 +R AR A+QAL+QID+ +E I E+ +++ Sbjct: 2 KRRTAREKALQALFQIDVSQADPSEAIDHVLEGEEGD---------------EYLTLVVT 46 Query: 75 GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134 GV++ K+ ID LI L EKW RL + ++LR GV EL VP V+I E + IA Sbjct: 47 GVLENKEEIDSLIKQYL-EKWKLERLATVDRNLLRQGVYELKYSKEVPANVVIDEAIEIA 105 Query: 135 HDFFYGDEPKFINAVLDKV 153 F + +FIN VL KV Sbjct: 106 KIFGDDNSSRFINGVLSKV 124 >gi|332703471|ref|ZP_08423559.1| NusB antitermination factor [Desulfovibrio africanus str. Walvis Bay] gi|332553620|gb|EGJ50664.1| NusB antitermination factor [Desulfovibrio africanus str. Walvis Bay] Length = 161 Score = 153 bits (388), Expect = 6e-36, Method: Composition-based stats. Identities = 35/160 (21%), Positives = 67/160 (41%), Gaps = 5/160 (3%) Query: 11 KLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFR 70 K R AR A Q LY I+ S + + F + ++ + Sbjct: 4 KKKSARRFAREKAFQVLYGIEFTDSSHLGAVRD----AFVEYPRPERQTKLDEKSDTFAW 59 Query: 71 VIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEY 130 ++ G + K +D +I ++ W +R+ + +ILR G+ E++ +P++V I+E Sbjct: 60 ELVKGTWESKAELDGIIGRF-SQNWKVTRIAKVDLTILRLGMFEILHRPDIPLKVAINEA 118 Query: 131 VCIAHDFFYGDEPKFINAVLDKVSRKEEIKRSGCVSAITQ 170 V +A +F F+N +LD +R + G + Sbjct: 119 VELAKEFGDEHSRNFVNGILDAAARAVDTGEIGTRPPQAK 158 >gi|120403637|ref|YP_953466.1| transcription antitermination protein NusB [Mycobacterium vanbaalenii PYR-1] gi|166215702|sp|A1T8G0|NUSB_MYCVP RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|119956455|gb|ABM13460.1| NusB antitermination factor [Mycobacterium vanbaalenii PYR-1] Length = 163 Score = 153 bits (388), Expect = 6e-36, Method: Composition-based stats. Identities = 41/146 (28%), Positives = 61/146 (41%), Gaps = 8/146 (5%) Query: 8 KDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLE 67 D K R AR AV L++ + G + E+ ++ + Sbjct: 2 PDRKGDRGRHQARKRAVDLLFEAEARGITAAEVAEARNALAEKRTDDIATLN-------P 54 Query: 68 WFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVII 127 + + GV HID LIS+ L + W+ RL + +ILR V EL+ VP V + Sbjct: 55 YTVTVAQGVTAHAAHIDDLISAHL-QGWTLDRLPAVDRAILRVAVWELLHAEDVPEPVAV 113 Query: 128 SEYVCIAHDFFYGDEPKFINAVLDKV 153 E V +A D P F+N VL +V Sbjct: 114 DEAVELAKQLSTDDSPGFVNGVLGQV 139 >gi|149378278|ref|ZP_01895989.1| NusB [Marinobacter algicola DG893] gi|149357443|gb|EDM45954.1| NusB [Marinobacter algicola DG893] Length = 158 Score = 153 bits (388), Expect = 6e-36, Method: Composition-based stats. Identities = 45/159 (28%), Positives = 73/159 (45%), Gaps = 13/159 (8%) Query: 4 QDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLH 63 Q + R AR A+Q LYQ S T+I SE+ V++ Sbjct: 10 QPAPAGQPKAGDRRRARALAMQGLYQRHFSKSSITDIESEFI-----------VDNDMSK 58 Query: 64 VDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPV 123 VD +FR ++ GV + +D L+ L +D I +I+R G EL VP Sbjct: 59 VDAAYFRDLLRGVHREQAELDRLLEPFLDR--PIHEVDAIELAIVRLGAYELKHRLDVPY 116 Query: 124 EVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRS 162 +V+I+E + +A F + KF+N++LDK+S + + + Sbjct: 117 KVVINEGIEMAKRFGGTEGHKFVNSLLDKLSHRLRLAET 155 >gi|121595089|ref|YP_986985.1| NusB antitermination factor [Acidovorax sp. JS42] gi|166215657|sp|A1W9I4|NUSB_ACISJ RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|120607169|gb|ABM42909.1| NusB antitermination factor [Acidovorax sp. JS42] Length = 177 Score = 153 bits (388), Expect = 7e-36, Method: Composition-based stats. Identities = 42/155 (27%), Positives = 68/155 (43%), Gaps = 13/155 (8%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 R AR A+QALYQ + G T I D S + D + ++HG Sbjct: 35 RSRAREFALQALYQHLVGGNDATAI-----------DVFTRDLSGFHKADAAHYDALLHG 83 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135 + Q++D LI+ L K S + I +++ GV E C VP V+I+E + +A Sbjct: 84 CITTAQYMDELIAPQLDRK--MSEISPIEHAVMWIGVYEFQHCQDVPWRVVINECIELAK 141 Query: 136 DFFYGDEPKFINAVLDKVSRKEEIKRSGCVSAITQ 170 +F D K++N VL+ ++ + A + Sbjct: 142 EFGGTDGHKYVNGVLNGLAPQLRATEVAADKAAAR 176 >gi|158422890|ref|YP_001524182.1| antitermination protein [Azorhizobium caulinodans ORS 571] gi|158329779|dbj|BAF87264.1| antitermination protein [Azorhizobium caulinodans ORS 571] Length = 137 Score = 153 bits (388), Expect = 8e-36, Method: Composition-based stats. Identities = 52/138 (37%), Positives = 81/138 (58%), Gaps = 3/138 (2%) Query: 24 VQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHI 83 +QALYQ+DI G EI++E+ET+ + E DV Y D FR ++ GV+ +++ I Sbjct: 1 MQALYQMDIAGTPVNEILAEFETHWLGREVEGDV---YPEADRALFRTVVEGVLAQQRTI 57 Query: 84 DLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEP 143 D ++ LT W R+++++ + LRAG ELI P V+I+EYV +A FF +E Sbjct: 58 DPMVDEALTAGWPLRRVELVMRATLRAGAFELIGKPETPARVVIAEYVNVAAAFFEREET 117 Query: 144 KFINAVLDKVSRKEEIKR 161 +NAVLD ++RK + Sbjct: 118 GMVNAVLDSLARKLRAEE 135 >gi|315646327|ref|ZP_07899447.1| NusB antitermination factor [Paenibacillus vortex V453] gi|315278526|gb|EFU41842.1| NusB antitermination factor [Paenibacillus vortex V453] Length = 152 Score = 153 bits (387), Expect = 8e-36, Method: Composition-based stats. Identities = 38/144 (26%), Positives = 72/144 (50%), Gaps = 2/144 (1%) Query: 15 RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74 +R +AR VQ+LYQ+++ + E +S + + E + E+ +++ Sbjct: 2 KRRVAREIVVQSLYQMEMNEVDSMEAVSMLLSEA-AEENETERVIGDEVQMKEYVLQLVN 60 Query: 75 GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134 G + K+ ID L++ L + W SRL + ILR V EL VP +V ++E + ++ Sbjct: 61 GTWESKESIDELLAHYL-KGWQVSRLSRVDRQILRLAVYELSSREDVPGKVAVNEAIELS 119 Query: 135 HDFFYGDEPKFINAVLDKVSRKEE 158 F + KF+N VL ++ ++ + Sbjct: 120 KHFGTDESGKFVNGVLGRMIQELD 143 >gi|222111432|ref|YP_002553696.1| nusb antitermination factor [Acidovorax ebreus TPSY] gi|254772634|sp|B9MBL7|NUSB_DIAST RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|221730876|gb|ACM33696.1| NusB antitermination factor [Acidovorax ebreus TPSY] Length = 177 Score = 153 bits (387), Expect = 8e-36, Method: Composition-based stats. Identities = 42/155 (27%), Positives = 68/155 (43%), Gaps = 13/155 (8%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 R AR A+QALYQ + G T I D S + D + ++HG Sbjct: 35 RSRAREFALQALYQHLVGGNDATAI-----------DVFTRDLSGFHKADAAHYDALLHG 83 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135 + Q++D LI+ L K S + I +++ GV E C VP V+I+E + +A Sbjct: 84 CITTAQYMDELIAPQLDRK--MSEISPIEHAVMWIGVYEFQHCQDVPWRVVINECIELAK 141 Query: 136 DFFYGDEPKFINAVLDKVSRKEEIKRSGCVSAITQ 170 +F D K++N VL+ ++ + A + Sbjct: 142 EFGGTDGHKYVNGVLNGLAPQLRATEVAADKAAAR 176 >gi|118617385|ref|YP_905717.1| transcription antitermination protein NusB [Mycobacterium ulcerans Agy99] gi|118569495|gb|ABL04246.1| N utilization substance protein NusB [Mycobacterium ulcerans Agy99] Length = 173 Score = 153 bits (387), Expect = 8e-36, Method: Composition-based stats. Identities = 45/153 (29%), Positives = 69/153 (45%), Gaps = 12/153 (7%) Query: 1 MTIQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESV 60 M K +K R AR AV +++ + G EI A+T+ DV + Sbjct: 1 MPEGRPGKPVKG---RHQARKRAVDLMFEAEARGLGPGEIAD---LRTELAETKPDVAPL 54 Query: 61 YLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHS 120 + + + G+ + HID LI+S L + W+ RL + +ILR V EL+ Sbjct: 55 H-----PYTAAVARGIGEHAAHIDDLITSHL-QGWTLDRLPAVDRAILRVAVWELLYADD 108 Query: 121 VPVEVIISEYVCIAHDFFYGDEPKFINAVLDKV 153 VP V + E V +A + D P F+N VL +V Sbjct: 109 VPEPVAVDEAVELAKELSTDDSPSFVNGVLGQV 141 >gi|183982195|ref|YP_001850486.1| N utilization substance protein NusB [Mycobacterium marinum M] gi|183175521|gb|ACC40631.1| N utilization substance protein NusB [Mycobacterium marinum M] Length = 173 Score = 153 bits (387), Expect = 9e-36, Method: Composition-based stats. Identities = 45/153 (29%), Positives = 68/153 (44%), Gaps = 12/153 (7%) Query: 1 MTIQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESV 60 M K +K R AR AV +++ + G EI A+T+ DV + Sbjct: 1 MPEGRPGKPVKG---RHQARKRAVDLMFEAEARGLGPGEIAD---LRTELAETKPDVAPL 54 Query: 61 YLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHS 120 + + + G+ HID LI+S L + W+ RL + +ILR V EL+ Sbjct: 55 H-----PYTAAVARGIDQHAAHIDDLITSHL-QGWTLDRLPAVDRAILRVAVWELLYADD 108 Query: 121 VPVEVIISEYVCIAHDFFYGDEPKFINAVLDKV 153 VP V + E V +A + D P F+N VL +V Sbjct: 109 VPEPVAVDEAVELAKELSTDDSPSFVNGVLGQV 141 >gi|147677514|ref|YP_001211729.1| transcription termination factor [Pelotomaculum thermopropionicum SI] gi|189035895|sp|A5D319|NUSB_PELTS RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|146273611|dbj|BAF59360.1| transcription termination factor [Pelotomaculum thermopropionicum SI] Length = 144 Score = 153 bits (387), Expect = 9e-36, Method: Composition-based stats. Identities = 34/147 (23%), Positives = 68/147 (46%), Gaps = 12/147 (8%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 R AR A+Q L+Q+D+ G E +D L E+ R+++ G Sbjct: 3 RRQARERALQILFQVDVGGADPGEAFRL-----------MDEGFGELKKYQEFARLLVGG 51 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135 ++ ID +I+ +++ W+ +R+ + +I+R + E+ C +P V ++E V + Sbjct: 52 TLENLAAIDRVIAG-VSKDWNINRMANVDRNIIRMALYEIFFCEDIPYSVSVNEAVELGK 110 Query: 136 DFFYGDEPKFINAVLDKVSRKEEIKRS 162 + + +FIN +L ++ E R Sbjct: 111 TYGGEESGRFINGILGRIVESPEEYRP 137 >gi|295677368|ref|YP_003605892.1| NusB antitermination factor [Burkholderia sp. CCGE1002] gi|295437211|gb|ADG16381.1| NusB antitermination factor [Burkholderia sp. CCGE1002] Length = 144 Score = 153 bits (387), Expect = 1e-35, Method: Composition-based stats. Identities = 43/153 (28%), Positives = 64/153 (41%), Gaps = 15/153 (9%) Query: 10 LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF 69 +K + RR R A Q LYQ + G EI D +L Y D E Sbjct: 1 MKSARRRS--RELATQGLYQWLLSGSPGGEI-----------DAQLRGAQGYDKADHEHL 47 Query: 70 RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISE 129 I+HGVM + + I+ CL +L + ++L EL +P V+I+E Sbjct: 48 DAILHGVMRDSEELSAAIAPCLDR--PIDQLSPVERAVLLVAAFELKNHVDIPYRVVINE 105 Query: 130 YVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRS 162 V + F D K++N VLDK+S + + Sbjct: 106 AVELTKTFGGSDGYKYVNGVLDKLSAQLRAAET 138 >gi|330824837|ref|YP_004388140.1| NusB antitermination factor [Alicycliphilus denitrificans K601] gi|329310209|gb|AEB84624.1| NusB antitermination factor [Alicycliphilus denitrificans K601] Length = 181 Score = 153 bits (387), Expect = 1e-35, Method: Composition-based stats. Identities = 43/156 (27%), Positives = 72/156 (46%), Gaps = 14/156 (8%) Query: 1 MTIQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESV 60 +T +K S R AR A+QALYQ + G T I D S Sbjct: 24 LTATGARKAGSKSG-RSRAREFALQALYQHLVGGNDATAI-----------DLFTRDLSG 71 Query: 61 YLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHS 120 + D + ++HG ++ QH+D LI+ L K + + I +++ GV E C Sbjct: 72 FHKADAAHYDALLHGCIETAQHMDALIAPLLDRK--MAEISPIEHAVMWIGVYEFQHCPD 129 Query: 121 VPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRK 156 VP V+I+E + +A +F D K++N +L+ ++ + Sbjct: 130 VPWRVVINECIELAKEFGGTDGHKYVNGILNGLAPQ 165 >gi|319762696|ref|YP_004126633.1| transcription antitermination factor nusb [Alicycliphilus denitrificans BC] gi|317117257|gb|ADU99745.1| transcription antitermination factor NusB [Alicycliphilus denitrificans BC] Length = 181 Score = 152 bits (386), Expect = 1e-35, Method: Composition-based stats. Identities = 43/156 (27%), Positives = 73/156 (46%), Gaps = 14/156 (8%) Query: 1 MTIQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESV 60 +T +K S R AR A+QALYQ + G T I D S Sbjct: 24 LTATGARKAGSKSG-RSRAREFALQALYQHLVGGNDATAI-----------DLFTRDLSG 71 Query: 61 YLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHS 120 + D + ++HG ++ +QH+D LI+ L K + + I +++ GV E C Sbjct: 72 FHKADAAHYDALLHGCIETEQHMDALIAPLLDRK--MAEISPIEHAVMWIGVYEFQHCPD 129 Query: 121 VPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRK 156 VP V+I+E + +A +F D K++N +L+ ++ + Sbjct: 130 VPWRVVINECIELAKEFGGTDGHKYVNGILNGLAPQ 165 >gi|82701147|ref|YP_410713.1| NusB antitermination factor [Nitrosospira multiformis ATCC 25196] gi|119390789|sp|Q2YD50|NUSB_NITMU RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|82409212|gb|ABB73321.1| NusB antitermination factor [Nitrosospira multiformis ATCC 25196] Length = 158 Score = 152 bits (386), Expect = 1e-35, Method: Composition-based stats. Identities = 43/157 (27%), Positives = 68/157 (43%), Gaps = 13/157 (8%) Query: 8 KDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLE 67 + RR +AR A+Q LYQ + G S I ++ L + D E Sbjct: 13 RGTARKSRRRLARELALQGLYQWCVAGGSAGTIEAQ-----------LRDTEEFPKTDEE 61 Query: 68 WFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVII 127 +F ++HGV+ + ++ I CL F+ L + SIL G EL +P +I Sbjct: 62 YFSRLLHGVLMQAPELEKEIQPCLDR--PFNELSPVEISILLLGAYELERHPEIPYRAVI 119 Query: 128 SEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRSGC 164 +E V +A + K++N VLDK++ K G Sbjct: 120 NEAVELAKAYGGTHGHKYVNGVLDKLAVKLRAAEIGA 156 >gi|299537762|ref|ZP_07051051.1| N utilization substance protein B-like protein [Lysinibacillus fusiformis ZC1] gi|298726741|gb|EFI67327.1| N utilization substance protein B-like protein [Lysinibacillus fusiformis ZC1] Length = 127 Score = 152 bits (386), Expect = 1e-35, Method: Composition-based stats. Identities = 37/143 (25%), Positives = 63/143 (44%), Gaps = 17/143 (11%) Query: 15 RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74 +R AR A+Q L+Q+D + E + + ++ I++ Sbjct: 2 KRHEAREKALQVLFQLDNTDLTVEEAMGHIK----------------GQPTNAFYEKIVN 45 Query: 75 GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134 G + + ID + L EKWS +RL I ++LR V EL+ P V+++E + + Sbjct: 46 GTAEHLEEIDATLEQHL-EKWSLARLPKIERTVLRLAVYELLYMPETPKRVVLNEAIELC 104 Query: 135 HDFFYGDEPKFINAVLDKVSRKE 157 F KF+N VL K + +E Sbjct: 105 KTFGDDSSSKFVNGVLSKFTEQE 127 >gi|41407196|ref|NP_960032.1| transcription antitermination protein NusB [Mycobacterium avium subsp. paratuberculosis K-10] gi|118463415|ref|YP_882592.1| transcription antitermination protein NusB [Mycobacterium avium 104] gi|254775857|ref|ZP_05217373.1| transcription antitermination protein NusB [Mycobacterium avium subsp. avium ATCC 25291] gi|81571413|sp|Q741J2|NUSB_MYCPA RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|166215696|sp|A0QI54|NUSB_MYCA1 RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|41395547|gb|AAS03415.1| NusB [Mycobacterium avium subsp. paratuberculosis K-10] gi|118164702|gb|ABK65599.1| transcription antitermination factor NusB [Mycobacterium avium 104] Length = 156 Score = 152 bits (386), Expect = 1e-35, Method: Composition-based stats. Identities = 47/143 (32%), Positives = 66/143 (46%), Gaps = 9/143 (6%) Query: 11 KLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFR 70 K R AR AV L++ + G S E++ ADT +V + + Sbjct: 3 KPLRGRHQARKRAVDLLFEAEARGLSPAEVVD---VRTGLADTNPEVAPL-----QPYTA 54 Query: 71 VIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEY 130 + GV D HID LISS L + W+ RL + +ILR V EL+ VP V + E Sbjct: 55 AVARGVGDHAAHIDDLISSHL-QGWTLDRLPAVDRAILRVAVWELLYADDVPEPVAVDEA 113 Query: 131 VCIAHDFFYGDEPKFINAVLDKV 153 V +A + D P F+N VL +V Sbjct: 114 VQLAKELSTDDSPGFVNGVLGQV 136 >gi|126653060|ref|ZP_01725195.1| transcription antitermination protein NusB [Bacillus sp. B14905] gi|126590161|gb|EAZ84285.1| transcription antitermination protein NusB [Bacillus sp. B14905] Length = 127 Score = 152 bits (386), Expect = 1e-35, Method: Composition-based stats. Identities = 37/143 (25%), Positives = 62/143 (43%), Gaps = 17/143 (11%) Query: 15 RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74 +R AR A+Q L+Q+D + E + + ++ I+ Sbjct: 2 KRHEAREKALQVLFQLDNTDLTVEEAMGHIK----------------GQPTNAFYEKIVT 45 Query: 75 GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134 G + + ID + L EKWS +RL I ++LR V EL+ P V+++E + + Sbjct: 46 GTAEHLEEIDATLEQHL-EKWSLARLPKIERTVLRLAVYELLYMPETPKRVVLNEAIELC 104 Query: 135 HDFFYGDEPKFINAVLDKVSRKE 157 F KF+N VL K + +E Sbjct: 105 KTFGDDSSSKFVNGVLSKFTEQE 127 >gi|83311445|ref|YP_421709.1| transcription termination factor [Magnetospirillum magneticum AMB-1] gi|119390781|sp|Q2W4S5|NUSB_MAGMM RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|82946286|dbj|BAE51150.1| Transcription termination factor [Magnetospirillum magneticum AMB-1] Length = 156 Score = 152 bits (386), Expect = 1e-35, Method: Composition-based stats. Identities = 47/153 (30%), Positives = 75/153 (49%), Gaps = 5/153 (3%) Query: 14 HRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVII 73 +R ARLAAVQ LYQ+++ G T + + + R + + D ++ Sbjct: 9 AKRSAARLAAVQVLYQMEMTGADTERALQDAKDRRAA-----EPKGRMADPDNSLLNQVV 63 Query: 74 HGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCI 133 GV + + ID + L+ W+ RL+ +L +I+RAG EL P V ISE+V + Sbjct: 64 RGVSAQLEDIDGHVGRALSGDWTVERLEAVLRAIVRAGAWELSARPQTPARVCISEWVDV 123 Query: 134 AHDFFYGDEPKFINAVLDKVSRKEEIKRSGCVS 166 AH F+ G EP +N VLD +++ G + Sbjct: 124 AHAFYSGPEPGLVNGVLDHLAQTLRGGEMGKGA 156 >gi|257893505|ref|ZP_05673158.1| transcription antiterminator NusB [Enterococcus faecium 1,231,408] gi|257829884|gb|EEV56491.1| transcription antiterminator NusB [Enterococcus faecium 1,231,408] Length = 152 Score = 152 bits (385), Expect = 1e-35, Method: Composition-based stats. Identities = 38/154 (24%), Positives = 66/154 (42%), Gaps = 3/154 (1%) Query: 3 IQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYL 62 ++ +K + R R A+QAL+ +D T E D + ES ++ Sbjct: 1 MKTKRKRMNKELSRHEIREMALQALFPLDFNADLTKEDAIFNAIELDHRDMINEDESEFV 60 Query: 63 HVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVP 122 V + ++ GV +K +D +I L W +R+ + ILR + E+ VP Sbjct: 61 PV---YLDTLVGGVCAKKDELDKVIEKHLKNNWHINRISKMDLVILRIAIFEMTYVTDVP 117 Query: 123 VEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRK 156 V ++E + +A F KF+N VL V ++ Sbjct: 118 AAVALNEAIELAKTFSDDRSRKFVNGVLSNVLKE 151 >gi|332525525|ref|ZP_08401682.1| putative N utilization substance B [Rubrivivax benzoatilyticus JA2] gi|332109092|gb|EGJ10015.1| putative N utilization substance B [Rubrivivax benzoatilyticus JA2] Length = 159 Score = 152 bits (385), Expect = 1e-35, Method: Composition-based stats. Identities = 38/156 (24%), Positives = 65/156 (41%), Gaps = 15/156 (9%) Query: 1 MTIQDN--KKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVE 58 M+ + +K R +R A+Q LY+ I G I D + + Sbjct: 1 MSTEPTAARKRAAPKSARRRSREIALQGLYEWLISGADAGTI-----------DAHMREQ 49 Query: 59 SVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIEC 118 + D F ++HG + +D +++ + ++L + ++L G EL C Sbjct: 50 DGFDKCDRAHFDALLHGCIAEASALDAVLARHVDR--RTNQLSPVEHAVLMIGAYELTHC 107 Query: 119 HSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVS 154 VP V I+E V +A F D K++N VLDK + Sbjct: 108 LEVPYRVAINEAVELAKSFGGTDGHKYVNGVLDKAA 143 >gi|145224333|ref|YP_001135011.1| transcription antitermination protein NusB [Mycobacterium gilvum PYR-GCK] gi|315444665|ref|YP_004077544.1| NusB antitermination factor [Mycobacterium sp. Spyr1] gi|189035893|sp|A4TBX3|NUSB_MYCGI RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|145216819|gb|ABP46223.1| NusB antitermination factor [Mycobacterium gilvum PYR-GCK] gi|315262968|gb|ADT99709.1| NusB antitermination factor [Mycobacterium sp. Spyr1] Length = 164 Score = 152 bits (385), Expect = 1e-35, Method: Composition-based stats. Identities = 45/146 (30%), Positives = 64/146 (43%), Gaps = 8/146 (5%) Query: 8 KDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLE 67 D K R AR AV L++ + G + E+ E AD D + Sbjct: 2 PDRKGDRGRHQARKRAVDLLFEAEARGITAAEVA---EARNALADNGADDIAPL----NP 54 Query: 68 WFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVII 127 + + GV D HID LIS+ L + W+ RL + ++LR V EL+ VP V + Sbjct: 55 YTVTVARGVTDHAAHIDDLISAHL-QGWTLDRLPAVDRAVLRVAVWELLHAVDVPEPVAV 113 Query: 128 SEYVCIAHDFFYGDEPKFINAVLDKV 153 E V +A D P F+N VL +V Sbjct: 114 DEAVELAKQLSTDDSPGFVNGVLGQV 139 >gi|296140288|ref|YP_003647531.1| NusB antitermination factor [Tsukamurella paurometabola DSM 20162] gi|296028422|gb|ADG79192.1| NusB antitermination factor [Tsukamurella paurometabola DSM 20162] Length = 165 Score = 152 bits (385), Expect = 1e-35, Method: Composition-based stats. Identities = 46/154 (29%), Positives = 73/154 (47%), Gaps = 8/154 (5%) Query: 1 MTIQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESV 60 M Q K K S R AR AV L++++ G T++ R A + V V Sbjct: 1 MPDQSENKRPKKSGARHRARKRAVDLLFEVEARG--VTDVDGLLAERRTLAADDASVPPV 58 Query: 61 YLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHS 120 E+ ++ GV ++ +D +I+S LT W+ +RL + +ILR V EL Sbjct: 59 -----SEYTAQLVTGVDVDREQLDSVITSHLT-GWTLARLPAVDRAILRVAVWELFNAPD 112 Query: 121 VPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVS 154 VP V++ E V +A + + P ++N VL KV+ Sbjct: 113 VPPAVVVDEAVELAKELSTDESPSYLNGVLGKVA 146 >gi|254180977|ref|ZP_04887575.1| transcription antitermination factor NusB [Burkholderia pseudomallei 1655] gi|184211516|gb|EDU08559.1| transcription antitermination factor NusB [Burkholderia pseudomallei 1655] Length = 145 Score = 152 bits (385), Expect = 1e-35, Method: Composition-based stats. Identities = 43/147 (29%), Positives = 62/147 (42%), Gaps = 14/147 (9%) Query: 10 LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF 69 +K S RR +R A Q LYQ + + +EI D +L Y D Sbjct: 1 MKKSARR-QSRELATQGLYQWLLSNAAPSEI-----------DAQLRGALGYDKADKTLL 48 Query: 70 RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISE 129 I+HGV+ + IS L +L + ++L EL P VII+E Sbjct: 49 DTILHGVIREHATLAEAISPSLDR--PIDQLSPVERAVLLIATYELTHQIETPYRVIINE 106 Query: 130 YVCIAHDFFYGDEPKFINAVLDKVSRK 156 V +A F D K++N VLDK++ K Sbjct: 107 AVELAKTFGGSDGYKYVNGVLDKLAVK 133 >gi|295399119|ref|ZP_06809101.1| NusB antitermination factor [Geobacillus thermoglucosidasius C56-YS93] gi|312110278|ref|YP_003988594.1| NusB antitermination factor [Geobacillus sp. Y4.1MC1] gi|294978585|gb|EFG54181.1| NusB antitermination factor [Geobacillus thermoglucosidasius C56-YS93] gi|311215379|gb|ADP73983.1| NusB antitermination factor [Geobacillus sp. Y4.1MC1] Length = 132 Score = 152 bits (385), Expect = 2e-35, Method: Composition-based stats. Identities = 43/147 (29%), Positives = 67/147 (45%), Gaps = 16/147 (10%) Query: 15 RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74 +R AR A+QAL+QID+ E + E D + R ++ Sbjct: 2 KRHEAREKALQALFQIDVGRIPPEEALQ-----NVMGGEEAD----------SFLRQLVF 46 Query: 75 GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134 GV + ++ ID L+ + L EKW+ R+ + +ILR E+ VPV+V + E V +A Sbjct: 47 GVTEHQEEIDELLRANL-EKWTLERVANVDRAILRMAAYEMKYLDDVPVKVSLDEAVELA 105 Query: 135 HDFFYGDEPKFINAVLDKVSRKEEIKR 161 F +F+N VL KV I+ Sbjct: 106 KKFGDTKSGRFVNGVLSKVKDALHIQE 132 >gi|257885163|ref|ZP_05664816.1| antitermination protein NusB [Enterococcus faecium 1,231,501] gi|257821015|gb|EEV48149.1| antitermination protein NusB [Enterococcus faecium 1,231,501] Length = 149 Score = 152 bits (385), Expect = 2e-35, Method: Composition-based stats. Identities = 38/150 (25%), Positives = 64/150 (42%), Gaps = 3/150 (2%) Query: 10 LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF 69 + R R A+QAL+ +D T E D + ES ++ V + Sbjct: 1 MNKELSRHEIREMALQALFPLDFNADLTKEDAIFNAIELDHRDMINEDESEFVPV---YL 57 Query: 70 RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISE 129 ++ GV +K +D +I L W +R+ + +ILR + E+ VP V ++E Sbjct: 58 DTLVGGVCAKKDELDKVIEKHLKNNWHINRISKMDLAILRIAIFEMTYVTDVPAAVALNE 117 Query: 130 YVCIAHDFFYGDEPKFINAVLDKVSRKEEI 159 + +A F KF+N VL V ++ E Sbjct: 118 AIELAKTFSDDRSRKFVNGVLSNVLKELEA 147 >gi|53720238|ref|YP_109224.1| transcription antitermination protein NusB [Burkholderia pseudomallei K96243] gi|53725935|ref|YP_103717.1| transcription antitermination protein NusB [Burkholderia mallei ATCC 23344] gi|67643981|ref|ZP_00442724.1| transcription antitermination factor NusB [Burkholderia mallei GB8 horse 4] gi|83718415|ref|YP_442074.1| transcription antitermination protein NusB [Burkholderia thailandensis E264] gi|121599031|ref|YP_992107.1| transcription antitermination protein NusB [Burkholderia mallei SAVP1] gi|124385249|ref|YP_001028552.1| transcription antitermination protein NusB [Burkholderia mallei NCTC 10229] gi|126438627|ref|YP_001060031.1| transcription antitermination protein NusB [Burkholderia pseudomallei 668] gi|126448499|ref|YP_001081550.1| transcription antitermination protein NusB [Burkholderia mallei NCTC 10247] gi|126452933|ref|YP_001067310.1| transcription antitermination protein NusB [Burkholderia pseudomallei 1106a] gi|134280178|ref|ZP_01766889.1| transcription antitermination factor NusB [Burkholderia pseudomallei 305] gi|166998350|ref|ZP_02264210.1| transcription antitermination factor NusB [Burkholderia mallei PRL-20] gi|167580929|ref|ZP_02373803.1| transcription antitermination protein NusB [Burkholderia thailandensis TXDOH] gi|167619020|ref|ZP_02387651.1| transcription antitermination protein NusB [Burkholderia thailandensis Bt4] gi|167739782|ref|ZP_02412556.1| transcription antitermination protein NusB [Burkholderia pseudomallei 14] gi|167817004|ref|ZP_02448684.1| transcription antitermination protein NusB [Burkholderia pseudomallei 91] gi|167825416|ref|ZP_02456887.1| transcription antitermination protein NusB [Burkholderia pseudomallei 9] gi|167846905|ref|ZP_02472413.1| transcription antitermination protein NusB [Burkholderia pseudomallei B7210] gi|167895484|ref|ZP_02482886.1| transcription antitermination protein NusB [Burkholderia pseudomallei 7894] gi|167903866|ref|ZP_02491071.1| transcription antitermination protein NusB [Burkholderia pseudomallei NCTC 13177] gi|167912133|ref|ZP_02499224.1| transcription antitermination protein NusB [Burkholderia pseudomallei 112] gi|167920107|ref|ZP_02507198.1| transcription antitermination protein NusB [Burkholderia pseudomallei BCC215] gi|217420428|ref|ZP_03451933.1| transcription antitermination factor NusB [Burkholderia pseudomallei 576] gi|226193837|ref|ZP_03789439.1| transcription antitermination factor NusB [Burkholderia pseudomallei Pakistan 9] gi|237813433|ref|YP_002897884.1| transcription antitermination factor NusB [Burkholderia pseudomallei MSHR346] gi|242315882|ref|ZP_04814898.1| transcription antitermination factor NusB [Burkholderia pseudomallei 1106b] gi|254175420|ref|ZP_04882080.1| transcription antitermination factor NusB [Burkholderia mallei ATCC 10399] gi|254191824|ref|ZP_04898327.1| transcription antitermination factor NusB [Burkholderia pseudomallei Pasteur 52237] gi|254196083|ref|ZP_04902508.1| transcription antitermination factor NusB [Burkholderia pseudomallei S13] gi|254202417|ref|ZP_04908780.1| transcription antitermination factor NusB [Burkholderia mallei FMH] gi|254207748|ref|ZP_04914098.1| transcription antitermination factor NusB [Burkholderia mallei JHU] gi|254261365|ref|ZP_04952419.1| transcription antitermination factor NusB [Burkholderia pseudomallei 1710a] gi|254298898|ref|ZP_04966348.1| transcription antitermination factor NusB [Burkholderia pseudomallei 406e] gi|254356350|ref|ZP_04972626.1| transcription antitermination factor NusB [Burkholderia mallei 2002721280] gi|257138259|ref|ZP_05586521.1| transcription antitermination protein NusB [Burkholderia thailandensis E264] gi|81604460|sp|Q62HV3|NUSB_BURMA RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|81607761|sp|Q63RP4|NUSB_BURPS RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|119372283|sp|Q2SYC5|NUSB_BURTA RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|166215667|sp|A3MMR4|NUSB_BURM7 RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|166215668|sp|A2S9D3|NUSB_BURM9 RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|166215669|sp|A1V1K4|NUSB_BURMS RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|166215670|sp|A3NY89|NUSB_BURP0 RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|166215671|sp|A3NCG0|NUSB_BURP6 RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|52210652|emb|CAH36636.1| probable N utilization substance protein B [Burkholderia pseudomallei K96243] gi|52429358|gb|AAU49951.1| N utilization substance protein B [Burkholderia mallei ATCC 23344] gi|83652240|gb|ABC36303.1| transcription antitermination factor NusB [Burkholderia thailandensis E264] gi|121227841|gb|ABM50359.1| transcription antitermination factor NusB [Burkholderia mallei SAVP1] gi|124293269|gb|ABN02538.1| N utilization substance protein B [Burkholderia mallei NCTC 10229] gi|126218120|gb|ABN81626.1| transcription antitermination factor NusB [Burkholderia pseudomallei 668] gi|126226575|gb|ABN90115.1| transcription antitermination factor NusB [Burkholderia pseudomallei 1106a] gi|126241369|gb|ABO04462.1| transcription antitermination factor NusB [Burkholderia mallei NCTC 10247] gi|134248185|gb|EBA48268.1| transcription antitermination factor NusB [Burkholderia pseudomallei 305] gi|147746664|gb|EDK53741.1| transcription antitermination factor NusB [Burkholderia mallei FMH] gi|147751642|gb|EDK58709.1| transcription antitermination factor NusB [Burkholderia mallei JHU] gi|148025347|gb|EDK83501.1| transcription antitermination factor NusB [Burkholderia mallei 2002721280] gi|157809075|gb|EDO86245.1| transcription antitermination factor NusB [Burkholderia pseudomallei 406e] gi|157939495|gb|EDO95165.1| transcription antitermination factor NusB [Burkholderia pseudomallei Pasteur 52237] gi|160696464|gb|EDP86434.1| transcription antitermination factor NusB [Burkholderia mallei ATCC 10399] gi|169652827|gb|EDS85520.1| transcription antitermination factor NusB [Burkholderia pseudomallei S13] gi|217395840|gb|EEC35857.1| transcription antitermination factor NusB [Burkholderia pseudomallei 576] gi|225934142|gb|EEH30127.1| transcription antitermination factor NusB [Burkholderia pseudomallei Pakistan 9] gi|237505806|gb|ACQ98124.1| transcription antitermination factor NusB [Burkholderia pseudomallei MSHR346] gi|238525458|gb|EEP88886.1| transcription antitermination factor NusB [Burkholderia mallei GB8 horse 4] gi|242139121|gb|EES25523.1| transcription antitermination factor NusB [Burkholderia pseudomallei 1106b] gi|243065419|gb|EES47605.1| transcription antitermination factor NusB [Burkholderia mallei PRL-20] gi|254220054|gb|EET09438.1| transcription antitermination factor NusB [Burkholderia pseudomallei 1710a] Length = 145 Score = 152 bits (385), Expect = 2e-35, Method: Composition-based stats. Identities = 43/147 (29%), Positives = 61/147 (41%), Gaps = 14/147 (9%) Query: 10 LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF 69 +K S RR +R A Q LYQ + + EI D +L Y D Sbjct: 1 MKKSARR-QSRELATQGLYQWLLSNAAPGEI-----------DAQLRGALGYDKADKTLL 48 Query: 70 RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISE 129 I+HGV+ + IS L +L + ++L EL P VII+E Sbjct: 49 DTILHGVIREHATLAEAISPSLDR--PIDQLSPVERAVLLIATYELTHQIETPYRVIINE 106 Query: 130 YVCIAHDFFYGDEPKFINAVLDKVSRK 156 V +A F D K++N VLDK++ K Sbjct: 107 AVELAKTFGGSDGYKYVNGVLDKLAVK 133 >gi|209517108|ref|ZP_03265955.1| NusB antitermination factor [Burkholderia sp. H160] gi|209502501|gb|EEA02510.1| NusB antitermination factor [Burkholderia sp. H160] Length = 144 Score = 152 bits (385), Expect = 2e-35, Method: Composition-based stats. Identities = 43/153 (28%), Positives = 64/153 (41%), Gaps = 15/153 (9%) Query: 10 LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF 69 +K + RR R A Q LYQ + G EI D +L Y D E Sbjct: 1 MKSARRRS--RELATQGLYQWLLSGSPGGEI-----------DAQLRGAQGYDKADHEHL 47 Query: 70 RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISE 129 I+HGVM + + I+ CL +L + ++L EL +P V+I+E Sbjct: 48 DAILHGVMRDSEALSAAIAPCLDR--PIDQLSPVERAVLLVAAFELKNHLDIPYRVVINE 105 Query: 130 YVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRS 162 V + F D K++N VLDK+S + + Sbjct: 106 AVELTKTFGGSDGYKYVNGVLDKLSAQLRAAET 138 >gi|254253011|ref|ZP_04946329.1| Transcription termination factor [Burkholderia dolosa AUO158] gi|124895620|gb|EAY69500.1| Transcription termination factor [Burkholderia dolosa AUO158] Length = 145 Score = 152 bits (384), Expect = 2e-35, Method: Composition-based stats. Identities = 44/159 (27%), Positives = 68/159 (42%), Gaps = 19/159 (11%) Query: 10 LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF 69 +K S RR +R A Q LYQ + S+ EI D +L Y D + Sbjct: 1 MKKSARR-QSRELATQGLYQWLLSNASSGEI-----------DAQLRGALGYDKADKDLL 48 Query: 70 RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISE 129 I+HGV+ + I+ L +L + ++L EL P V+I+E Sbjct: 49 DAILHGVIREHATLVEAIAPALDR--PIDQLSPVERAVLLIATFELTHHIETPYRVVINE 106 Query: 130 YVCIAHDFFYGDEPKFINAVLDKVSRKE-----EIKRSG 163 V +A F D K++N VLDK++ K + +R+G Sbjct: 107 AVELAKTFGGSDGYKYVNGVLDKLAAKLRPAETQARRNG 145 >gi|187925077|ref|YP_001896719.1| transcription antitermination protein NusB [Burkholderia phytofirmans PsJN] gi|238689481|sp|B2T6D1|NUSB_BURPP RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|187716271|gb|ACD17495.1| NusB antitermination factor [Burkholderia phytofirmans PsJN] Length = 144 Score = 152 bits (384), Expect = 2e-35, Method: Composition-based stats. Identities = 42/153 (27%), Positives = 66/153 (43%), Gaps = 15/153 (9%) Query: 10 LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF 69 +K + RR R A Q LYQ + G EI D +L + D E Sbjct: 1 MKSARRRS--RELATQGLYQWLLSGSPGGEI-----------DAQLRGAQGFDKADHEHL 47 Query: 70 RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISE 129 I+HGV+ + + I+ CL +L + ++L EL +P V+I+E Sbjct: 48 DAILHGVIRDSEALSAAIAPCLDR--PIEQLSPVERAVLLVAAFELKNHVDIPYRVVINE 105 Query: 130 YVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRS 162 V +A F D K++N VLDK+S + + + Sbjct: 106 AVELAKTFGGADGYKYVNGVLDKLSAQLRVDET 138 >gi|167720799|ref|ZP_02404035.1| transcription antitermination protein NusB [Burkholderia pseudomallei DM98] Length = 145 Score = 152 bits (384), Expect = 2e-35, Method: Composition-based stats. Identities = 43/147 (29%), Positives = 61/147 (41%), Gaps = 14/147 (9%) Query: 10 LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF 69 +K S RR +R A Q LYQ + + EI D +L Y D Sbjct: 1 MKKSARR-QSRELATQGLYQWLLSNAAPGEI-----------DAQLRGALGYDKADKTLL 48 Query: 70 RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISE 129 I+HGV+ + IS L +L + ++L EL P VII+E Sbjct: 49 DTILHGVIREHATLAEAISPSLDR--PIEQLSPVERAVLLIATYELTHQIETPYRVIINE 106 Query: 130 YVCIAHDFFYGDEPKFINAVLDKVSRK 156 V +A F D K++N VLDK++ K Sbjct: 107 AVELAKTFGGSDGYKYVNGVLDKLAVK 133 >gi|186475383|ref|YP_001856853.1| transcription antitermination protein NusB [Burkholderia phymatum STM815] gi|238691269|sp|B2JED0|NUSB_BURP8 RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|184191842|gb|ACC69807.1| NusB antitermination factor [Burkholderia phymatum STM815] Length = 145 Score = 152 bits (384), Expect = 2e-35, Method: Composition-based stats. Identities = 43/157 (27%), Positives = 67/157 (42%), Gaps = 15/157 (9%) Query: 10 LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF 69 +K + RR R A Q LYQ + G EI D +L Y D E Sbjct: 1 MKSARRRS--RELATQGLYQWLLSGSPAGEI-----------DAQLRGAQGYDKADHEHL 47 Query: 70 RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISE 129 I+HGV+ + + ++ CL +L + ++L EL +P V+I+E Sbjct: 48 DAILHGVIRDSEALSADLAPCLDR--PIDQLSPVERAVLLVAAYELKNHIDIPYRVVINE 105 Query: 130 YVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRSGCVS 166 V +A F D K++N VLDK+S K + + + Sbjct: 106 AVELAKTFGGADGYKYVNGVLDKLSAKLRVDETQAAA 142 >gi|15842067|ref|NP_337104.1| transcription antitermination protein NusB [Mycobacterium tuberculosis CDC1551] gi|13882348|gb|AAK46918.1| N utilization substance protein B [Mycobacterium tuberculosis CDC1551] Length = 290 Score = 152 bits (384), Expect = 2e-35, Method: Composition-based stats. Identities = 44/145 (30%), Positives = 70/145 (48%), Gaps = 9/145 (6%) Query: 9 DLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEW 68 D K R AR AV L++ ++ G S E++ T A+ + D+ ++ + Sbjct: 3 DRKPVRGRHQARKRAVALLFEAEVRGISAAEVVD---TRAALAEAKPDIARLH-----PY 54 Query: 69 FRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIIS 128 + GV + HID LI++ L W+ RL + +ILR V EL+ VP V++ Sbjct: 55 TAAVARGVSEHAAHIDDLITAHL-RGWTLDRLPAVDRAILRVSVWELLHAADVPEPVVVD 113 Query: 129 EYVCIAHDFFYGDEPKFINAVLDKV 153 E V +A + D P F+N VL +V Sbjct: 114 EAVQLAKELSTDDSPGFVNGVLGQV 138 >gi|323527047|ref|YP_004229200.1| NusB antitermination factor [Burkholderia sp. CCGE1001] gi|323384049|gb|ADX56140.1| NusB antitermination factor [Burkholderia sp. CCGE1001] Length = 144 Score = 152 bits (384), Expect = 2e-35, Method: Composition-based stats. Identities = 42/153 (27%), Positives = 66/153 (43%), Gaps = 15/153 (9%) Query: 10 LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF 69 +K + RR R A Q LYQ + G EI D +L + D E Sbjct: 1 MKSARRRS--RELATQGLYQWLLSGSPGGEI-----------DAQLRGAQGFDKADHEHL 47 Query: 70 RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISE 129 I+HGV+ + + I+ CL +L + ++L EL +P V+I+E Sbjct: 48 DAILHGVIRDSEALSADIAPCLDR--PIDQLSPVERAVLLVAAFELKNHIDIPYRVVINE 105 Query: 130 YVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRS 162 V +A F D K++N VLDK++ K + + Sbjct: 106 AVELAKTFGGADGYKYVNGVLDKLAAKLRVTET 138 >gi|330815784|ref|YP_004359489.1| NusB antitermination factor [Burkholderia gladioli BSR3] gi|327368177|gb|AEA59533.1| NusB antitermination factor [Burkholderia gladioli BSR3] Length = 144 Score = 152 bits (384), Expect = 2e-35, Method: Composition-based stats. Identities = 40/155 (25%), Positives = 65/155 (41%), Gaps = 14/155 (9%) Query: 10 LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF 69 +K S RR +R A Q LYQ + ST EI D +L Y D E Sbjct: 1 MKKSARR-QSRELATQGLYQWLLSNASTGEI-----------DAQLRGAQGYEKADRELL 48 Query: 70 RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISE 129 I++GV+ + +++ L +L + ++L EL P V+I+E Sbjct: 49 ETIVYGVVREHADLAAILAPNLDR--PIEQLSPVERAVLLMATFELKHQIETPYRVVINE 106 Query: 130 YVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRSGC 164 + + F D K++N VLDK++ K + + Sbjct: 107 AIELTKTFGGSDGHKYVNGVLDKLALKLRPEEAAA 141 >gi|254821798|ref|ZP_05226799.1| transcription antitermination protein NusB [Mycobacterium intracellulare ATCC 13950] Length = 169 Score = 152 bits (384), Expect = 2e-35, Method: Composition-based stats. Identities = 42/138 (30%), Positives = 62/138 (44%), Gaps = 9/138 (6%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 R AR AV L++ + G S E++ T L + + + + G Sbjct: 8 RHQARKRAVDLLFEAEARGLSPAEVVDVR--------TGLAEANPEIAPLQPYTAAVARG 59 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135 V + H+D LISS L + W+ RL + +ILR V EL+ VP V + E V +A Sbjct: 60 VGEHAAHVDDLISSHL-QGWTLDRLPAVDRAILRVAVWELLYADDVPEPVAVDEAVQLAK 118 Query: 136 DFFYGDEPKFINAVLDKV 153 + D P F+N VL V Sbjct: 119 ELSTDDSPGFVNGVLGHV 136 >gi|237785587|ref|YP_002906292.1| N utilization substance protein B [Corynebacterium kroppenstedtii DSM 44385] gi|237758499|gb|ACR17749.1| N utilization substance protein B [Corynebacterium kroppenstedtii DSM 44385] Length = 192 Score = 152 bits (384), Expect = 2e-35, Method: Composition-based stats. Identities = 40/162 (24%), Positives = 73/162 (45%), Gaps = 9/162 (5%) Query: 3 IQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYL 62 + + K R AR AV L++ + ++ + + D ES L Sbjct: 36 TKSTRSGFKRHGSRYKARRRAVDILFEAEFRDQDPVYVVEQRR------ELSQDSESGVL 89 Query: 63 HVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVP 122 V ++ I+ GV + ID I+S L+ W R+ + +++R EL+ VP Sbjct: 90 PV-SDYTATIVSGVAENLDGIDSAIASHLSSTWRLDRIPAVDRAVMRVSTWELLHNEEVP 148 Query: 123 VEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRSGC 164 +V +SE + +A ++ P ++NAVLD ++ E++RS Sbjct: 149 PKVAVSEGIELASEYSTDVAPAYVNAVLDDIA--GEVQRSQS 188 >gi|114327667|ref|YP_744824.1| n utilization substance protein B [Granulibacter bethesdensis CGDNIH1] gi|119390773|sp|Q0BTF1|NUSB_GRABC RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|114315841|gb|ABI61901.1| n utilization substance protein B [Granulibacter bethesdensis CGDNIH1] Length = 163 Score = 152 bits (384), Expect = 2e-35, Method: Composition-based stats. Identities = 46/153 (30%), Positives = 81/153 (52%), Gaps = 2/153 (1%) Query: 11 KLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCA--DTELDVESVYLHVDLEW 68 + + R +R+AAVQAL+Q + S +I ++ +R A + + ++ Sbjct: 3 RRTRPRTASRVAAVQALFQGEQAQESLEAVIEQFVRFRLGALPGQDGFEDGRIPDAEVPL 62 Query: 69 FRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIIS 128 F I+ + ID L+ + L +W +RLD +L ++LRAG EL P V+I+ Sbjct: 63 FSRIVRAATKEQDVIDPLLITALPAEWPLARLDPVLRALLRAGACELRMKDGPPPRVVIN 122 Query: 129 EYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKR 161 EY+ IAH FF G+EP+ +N +L+ ++R+ + Sbjct: 123 EYLDIAHGFFQGEEPRMVNGILNALARQLRPEE 155 >gi|95929563|ref|ZP_01312305.1| NusB antitermination factor [Desulfuromonas acetoxidans DSM 684] gi|95134260|gb|EAT15917.1| NusB antitermination factor [Desulfuromonas acetoxidans DSM 684] Length = 152 Score = 152 bits (384), Expect = 2e-35, Method: Composition-based stats. Identities = 38/147 (25%), Positives = 72/147 (48%), Gaps = 5/147 (3%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYE-TYRFCADT--ELDVESVYLHVDLEWFRV- 71 R R A++ LY + E++S++ +RF D E + L D+ +F Sbjct: 6 RRNGREYALKILYSLYDQDAPLDEVLSDFWGNFRFSNDVLGEPEEPQSPLSDDVIFFSEQ 65 Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131 ++ GV + + ID ++ ++ W+ R+ + S++R ELI P V+I+E + Sbjct: 66 LVKGVYEHLEEIDAMLLDT-SKNWALDRMPRLDLSLMRMACYELIYVDKTPTNVVINEAI 124 Query: 132 CIAHDFFYGDEPKFINAVLDKVSRKEE 158 IA + D P F+N VLD+++++ Sbjct: 125 EIAKRYGTKDTPAFLNGVLDRIAKRAR 151 >gi|317128425|ref|YP_004094707.1| NusB antitermination factor [Bacillus cellulosilyticus DSM 2522] gi|315473373|gb|ADU29976.1| NusB antitermination factor [Bacillus cellulosilyticus DSM 2522] Length = 132 Score = 152 bits (384), Expect = 2e-35, Method: Composition-based stats. Identities = 39/143 (27%), Positives = 67/143 (46%), Gaps = 16/143 (11%) Query: 15 RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74 R +AR+ AVQ+LYQI++ G S + I +D + ++ Sbjct: 2 NRRVARVRAVQSLYQIEMTGVSPDQAIDTVLENGEISD--------------SFLSQLVE 47 Query: 75 GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134 G ++ ID L+ S L + W+ SR+ + +ILR E+ +P+ V I+E + IA Sbjct: 48 GTVEHLHEIDELLISAL-KNWALSRISRVDRAILRMATYEMKCLDDIPMNVSINEAIDIA 106 Query: 135 HDF-FYGDEPKFINAVLDKVSRK 156 F + KF+N +L ++ K Sbjct: 107 KGFTGEEESGKFVNGILSNIATK 129 >gi|261856451|ref|YP_003263734.1| NusB antitermination factor [Halothiobacillus neapolitanus c2] gi|261836920|gb|ACX96687.1| NusB antitermination factor [Halothiobacillus neapolitanus c2] Length = 196 Score = 152 bits (384), Expect = 2e-35, Method: Composition-based stats. Identities = 47/157 (29%), Positives = 71/157 (45%), Gaps = 15/157 (9%) Query: 8 KDLKLSHRRGI--ARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVD 65 K S ++ AR AVQALYQ + + +++ F L VD Sbjct: 51 PPRKPSPKKRWRWARERAVQALYQQILNHTPVDLLDAQFMEDAF-----------MLKVD 99 Query: 66 LEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEV 125 LE FR I+ GV ++ +D S L + +D I +ILR G ELI +P V Sbjct: 100 LELFRRIVRGVSANEESLDEAYSPLLDR--PLAEIDPIEQAILRLGAFELIHTPEIPRAV 157 Query: 126 IISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRS 162 I+E V +A + + K+IN VLDK++ + + Sbjct: 158 AINEAVEMAKLYGATESHKYINGVLDKLADRVRLNEP 194 >gi|254391339|ref|ZP_05006543.1| transcription antitermination protein NusB [Streptomyces clavuligerus ATCC 27064] gi|294811554|ref|ZP_06770197.1| Transcription antitermination protein NusB [Streptomyces clavuligerus ATCC 27064] gi|326440061|ref|ZP_08214795.1| transcription antitermination protein NusB [Streptomyces clavuligerus ATCC 27064] gi|197705030|gb|EDY50842.1| transcription antitermination protein NusB [Streptomyces clavuligerus ATCC 27064] gi|294324153|gb|EFG05796.1| Transcription antitermination protein NusB [Streptomyces clavuligerus ATCC 27064] Length = 142 Score = 152 bits (384), Expect = 2e-35, Method: Composition-based stats. Identities = 35/138 (25%), Positives = 61/138 (44%), Gaps = 9/138 (6%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 R AR A Q L++ D S +++++ + + V E+ ++ G Sbjct: 4 RNKARKRAFQILFEADQRDVSVQTVLADWIRHSRTDTRQPPVS--------EYTMELVEG 55 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135 ID LI++ E W R+ ++ +ILR G EL+ P V+I E V +A Sbjct: 56 YAQYAPRIDELIATY-AEGWDLDRMPVVDRNILRLGTYELVWVDGTPDAVVIDEAVELAK 114 Query: 136 DFFYGDEPKFINAVLDKV 153 +F + P F+N +L + Sbjct: 115 EFSTDESPAFVNGLLGRF 132 >gi|167837551|ref|ZP_02464434.1| transcription antitermination protein NusB [Burkholderia thailandensis MSMB43] Length = 145 Score = 152 bits (384), Expect = 2e-35, Method: Composition-based stats. Identities = 42/145 (28%), Positives = 60/145 (41%), Gaps = 14/145 (9%) Query: 10 LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF 69 +K S RR +R A Q LYQ + + EI D +L Y D Sbjct: 1 MKKSARR-QSRELATQGLYQWLLSNAAPGEI-----------DAQLRGALGYDKADKTLL 48 Query: 70 RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISE 129 I+HGV+ + IS L +L + ++L EL P VII+E Sbjct: 49 DTILHGVIREHATLAEAISPSLDR--PIDQLSPVERAVLLIATYELTHQIETPYRVIINE 106 Query: 130 YVCIAHDFFYGDEPKFINAVLDKVS 154 V +A F D K++N VLDK++ Sbjct: 107 AVELAKTFGGSDGYKYVNGVLDKLA 131 >gi|169828975|ref|YP_001699133.1| N utilization substance protein B-like protein [Lysinibacillus sphaericus C3-41] gi|238688177|sp|B1HRY0|NUSB_LYSSC RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|168993463|gb|ACA41003.1| N utilization substance protein B-like protein (NusB-like protein) [Lysinibacillus sphaericus C3-41] Length = 127 Score = 152 bits (384), Expect = 2e-35, Method: Composition-based stats. Identities = 37/143 (25%), Positives = 62/143 (43%), Gaps = 17/143 (11%) Query: 15 RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74 +R AR A+Q L+Q+D + E + + ++ I+ Sbjct: 2 KRHEAREKALQVLFQLDNTDLTVEEAMGHIK----------------GQPTNVFYEKIVT 45 Query: 75 GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134 G + + ID + L EKWS +RL I ++LR V EL+ P V+++E + + Sbjct: 46 GTAEHLEEIDATLEQHL-EKWSLARLPKIERTVLRLAVYELLYMPETPKRVVLNEAIELC 104 Query: 135 HDFFYGDEPKFINAVLDKVSRKE 157 F KF+N VL K + +E Sbjct: 105 KTFGDDSSSKFVNGVLSKFTEQE 127 >gi|126729172|ref|ZP_01744986.1| transcription antitermination factor NusB [Sagittula stellata E-37] gi|126710162|gb|EBA09214.1| transcription antitermination factor NusB [Sagittula stellata E-37] Length = 168 Score = 151 bits (383), Expect = 2e-35, Method: Composition-based stats. Identities = 49/160 (30%), Positives = 82/160 (51%), Gaps = 3/160 (1%) Query: 2 TIQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVY 61 + R +RL AVQALYQ++ G ++ E+ +RF A + D + Sbjct: 9 PQPGKPSGNQKRKMRSASRLYAVQALYQMEQSGIPVDKVRREFLEFRFGAVDD-DDGTEM 67 Query: 62 LHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSV 121 L D+ F +I ++ + +D + L KW +R+D +L ++ RA EL+ Sbjct: 68 LDGDVSLFSHVIEEALNWQAKVDQMTDRALVAKWPIARIDPVLRALFRAAGAELV-ATDT 126 Query: 122 PVEVIISEYVCIAHDFF-YGDEPKFINAVLDKVSRKEEIK 160 P +V+I EYV +A F+ G E KF+NAVLD ++R+ + + Sbjct: 127 PPKVVIVEYVDVAVAFYPDGKEAKFVNAVLDHMAREAKPE 166 >gi|196248859|ref|ZP_03147559.1| NusB antitermination factor [Geobacillus sp. G11MC16] gi|196211735|gb|EDY06494.1| NusB antitermination factor [Geobacillus sp. G11MC16] Length = 130 Score = 151 bits (383), Expect = 2e-35, Method: Composition-based stats. Identities = 44/139 (31%), Positives = 62/139 (44%), Gaps = 16/139 (11%) Query: 15 RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74 +R AR A+QAL+QID+ E I E+D + R ++ Sbjct: 2 KRHEAREKALQALFQIDVGHIPPDEAIG-----NVTGSGEVD----------PFLRQLVF 46 Query: 75 GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134 GV++ + ID L+ S L EKW R+ + ILR E+ VPV V + E V +A Sbjct: 47 GVIEHRAEIDELLRSNL-EKWKLERVANVDRVILRMATYEMKYVDDVPVSVSLDEAVELA 105 Query: 135 HDFFYGDEPKFINAVLDKV 153 F F+N VL KV Sbjct: 106 KKFGDWKSGSFVNGVLSKV 124 >gi|212638784|ref|YP_002315304.1| transcription antitermination protein NusB [Anoxybacillus flavithermus WK1] gi|212560264|gb|ACJ33319.1| Transcription termination factor [Anoxybacillus flavithermus WK1] Length = 152 Score = 151 bits (383), Expect = 2e-35, Method: Composition-based stats. Identities = 41/139 (29%), Positives = 68/139 (48%), Gaps = 17/139 (12%) Query: 15 RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74 +R AR A+QAL+QID+ G E ++ + E D + +++ Sbjct: 26 KRHTAREKALQALFQIDVGGIEPHEAVANVI------EEETD----------PFMEMLVF 69 Query: 75 GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134 GV++ ++ ID L+ L EKW+ R+ + SILR V E+ +P+ V + E + +A Sbjct: 70 GVVEHQKEIDDLLRQHL-EKWTLERVANVDRSILRMAVFEMKYMDDIPLSVSMDEAIELA 128 Query: 135 HDFFYGDEPKFINAVLDKV 153 F +FIN VL K+ Sbjct: 129 KVFGDEKSSRFINGVLAKI 147 >gi|260222860|emb|CBA32850.1| N utilization substance protein B homolog [Curvibacter putative symbiont of Hydra magnipapillata] Length = 177 Score = 151 bits (383), Expect = 3e-35, Method: Composition-based stats. Identities = 38/159 (23%), Positives = 69/159 (43%), Gaps = 14/159 (8%) Query: 1 MTIQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESV 60 +T +K S+ R AR A+Q LYQ + + +I D + Sbjct: 21 LTATGARKAASKSN-RTRAREFALQGLYQSLVGRNAVDDI-----------DPFTRDLAG 68 Query: 61 YLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHS 120 + D F ++HG + + +D LI+ L S + I +I+ G E+ C Sbjct: 69 FSKADAVHFDALLHGCVAEAEALDALITPALDR--PMSEISPIEHAIMWIGAYEMKHCLD 126 Query: 121 VPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEI 159 VP V+++E + +A +F D K++N VL+ ++ + Sbjct: 127 VPWRVVLNECIELAKEFGGTDGHKYVNGVLNGIAPQLRA 165 >gi|148264233|ref|YP_001230939.1| NusB antitermination factor [Geobacter uraniireducens Rf4] gi|189035890|sp|A5G3J8|NUSB_GEOUR RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|146397733|gb|ABQ26366.1| NusB antitermination factor [Geobacter uraniireducens Rf4] Length = 145 Score = 151 bits (383), Expect = 3e-35, Method: Composition-based stats. Identities = 40/141 (28%), Positives = 66/141 (46%), Gaps = 4/141 (2%) Query: 14 HRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVII 73 R R A+QALY D+ T ++ F +E V++ + ++ Sbjct: 2 SSRREGRELALQALYSSDVEVMDGTTVLKRIME-NFGDGSEPAVDA--HSRSFSFAAELV 58 Query: 74 HGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCI 133 +GV+ + ID I ++ WS SR+ + +ILR V EL +P V I+E + + Sbjct: 59 NGVVANRAAIDQRIEEK-SKNWSISRMARVDLNILRLAVFELFYRPDIPKNVTINEAIEV 117 Query: 134 AHDFFYGDEPKFINAVLDKVS 154 A F D P FIN +LD+++ Sbjct: 118 AKKFGADDSPAFINGILDEIA 138 >gi|27904889|ref|NP_778015.1| transcription antitermination protein NusB [Buchnera aphidicola str. Bp (Baizongia pistaciae)] gi|29427633|sp|P59452|NUSB_BUCBP RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|27904287|gb|AAO27120.1| N utilization substance protein B [Buchnera aphidicola str. Bp (Baizongia pistaciae)] Length = 144 Score = 151 bits (383), Expect = 3e-35, Method: Composition-based stats. Identities = 44/156 (28%), Positives = 71/156 (45%), Gaps = 14/156 (8%) Query: 10 LKLSHR-RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEW 68 +K + R AR AVQALY I ++I+ ++ + + +D + Sbjct: 1 MKSKTKTRRKAREYAVQALYSWQISKNDIYDVINHFKKNKTINE-----------IDQIY 49 Query: 69 FRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIIS 128 F +I G+ +++D L+ L+ + L I +ILR EL + + +P +V I+ Sbjct: 50 FYELIIGITKNLKYLDELMRPYLSR--TIQELGQIEKAILRISFFELDKRYDIPFKVTIN 107 Query: 129 EYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRSGC 164 E + +A F D KFIN VLDK S K S Sbjct: 108 ESIELAKLFGAKDSHKFINGVLDKASLKLRKNNSNK 143 >gi|302036739|ref|YP_003797061.1| transcription antitermination factor NusB [Candidatus Nitrospira defluvii] gi|190343154|gb|ACE75542.1| transcription antitermination protein [Candidatus Nitrospira defluvii] gi|300604803|emb|CBK41135.1| Transcription antitermination factor NusB [Candidatus Nitrospira defluvii] Length = 157 Score = 151 bits (383), Expect = 3e-35, Method: Composition-based stats. Identities = 41/140 (29%), Positives = 66/140 (47%), Gaps = 13/140 (9%) Query: 14 HRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVII 73 R AR AVQ L+Q DI G + + + Y + + + ++ Sbjct: 2 ASRHQARERAVQILFQYDIHGQAGPWLDDFWIQYPLAEELRV------------FAERLV 49 Query: 74 HGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCI 133 GV K+ +D LI + T W SR+ +I +ILR G EL+ VP +V ++E + + Sbjct: 50 AGVRANKKELDALIGTYAT-NWKVSRMPIIDRNILRMGCFELLHVPEVPAKVTLNEAIEL 108 Query: 134 AHDFFYGDEPKFINAVLDKV 153 A F + KF+N +LDK+ Sbjct: 109 AKSFGDEEASKFVNGILDKL 128 >gi|223939373|ref|ZP_03631252.1| NusB antitermination factor [bacterium Ellin514] gi|223891977|gb|EEF58459.1| NusB antitermination factor [bacterium Ellin514] Length = 185 Score = 151 bits (383), Expect = 3e-35, Method: Composition-based stats. Identities = 42/178 (23%), Positives = 74/178 (41%), Gaps = 17/178 (9%) Query: 2 TIQDNKKDLKLSHRRGIARLAAVQALYQIDIIG-CSTTEIISEYETYR------------ 48 + QD + ++ +R AR AVQ L+Q D+ E ++ + + Sbjct: 9 SQQDFIRHHRVMGKRREARERAVQFLFQHDLNPPEKLEEALNHFWDSQRPAALAEDKGGA 68 Query: 49 -FCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSI 107 + EL + + +I G ++ + D I E W R+ + +I Sbjct: 69 TWGQKVELPAPTAEEAAVRIFADPLIRGALEHRDEADAQIKKY-AENWDLHRIAAVDRNI 127 Query: 108 LRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRSGCV 165 LR + E++ +P V I+E V IA F + KF+N +LDK+ K E+ R + Sbjct: 128 LRLAIFEMLHREDIPPVVSINEAVDIAKKFSTYESGKFVNGILDKI--KGELMRPARI 183 >gi|29833402|ref|NP_828036.1| transcription antitermination protein NusB [Streptomyces avermitilis MA-4680] gi|39931877|sp|Q827R4|NUSB_STRAW RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|29610525|dbj|BAC74571.1| putative transcription termination protein [Streptomyces avermitilis MA-4680] Length = 144 Score = 151 bits (382), Expect = 3e-35, Method: Composition-based stats. Identities = 38/147 (25%), Positives = 67/147 (45%), Gaps = 12/147 (8%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 R AR A Q L++ D G +++++ + + V E+ ++ G Sbjct: 4 RNTARKRAFQILFEGDQRGVDVLTVLADWIRHSRTDTRQPPVS--------EYTMQLVEG 55 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135 + ID LIS W+ R+ ++ +ILR G EL+ P V++ E V +A Sbjct: 56 YAKKVNRIDELISQYAV-GWTLDRMPVVDRNILRLGTYELLWVDETPDAVVLDEAVQLAK 114 Query: 136 DFFYGDEPKFINAVLDKVSRKEEIKRS 162 +F D P F+N +L ++ +E+K S Sbjct: 115 EFSTDDSPAFVNGLLGRL---KELKPS 138 >gi|124268133|ref|YP_001022137.1| putative N utilization substance B [Methylibium petroleiphilum PM1] gi|124260908|gb|ABM95902.1| putative N utilization substance B (transcriptional antiterminator)(l factor) transcription regulator protein [Methylibium petroleiphilum PM1] Length = 176 Score = 151 bits (382), Expect = 3e-35, Method: Composition-based stats. Identities = 39/151 (25%), Positives = 62/151 (41%), Gaps = 14/151 (9%) Query: 4 QDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLH 63 +K + S RR +R A+Q LYQ + G I + + Sbjct: 22 PGGRKPAQKSSRRR-SREFALQGLYQWLVSGSEAVVIEAHMREL-----------DGFKQ 69 Query: 64 VDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPV 123 D F ++HG + +D +++ + K + L I +L G EL C +P Sbjct: 70 ADAAHFDALLHGCVAEAAALDAVLARHVDRKTT--ELSPIEHGVLMIGAYELKHCIDIPY 127 Query: 124 EVIISEYVCIAHDFFYGDEPKFINAVLDKVS 154 V I+E V +A F D K++N VLDK + Sbjct: 128 RVAINEAVELAKSFGGTDGHKYVNGVLDKAA 158 >gi|78046359|ref|YP_362534.1| transcription antitermination protein NusB [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|325928457|ref|ZP_08189648.1| transcription antitermination factor NusB [Xanthomonas perforans 91-118] gi|119390847|sp|Q3BXH9|NUSB_XANC5 RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|78034789|emb|CAJ22434.1| transcription termination factor NusB [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|325541174|gb|EGD12725.1| transcription antitermination factor NusB [Xanthomonas perforans 91-118] Length = 162 Score = 151 bits (382), Expect = 3e-35, Method: Composition-based stats. Identities = 38/146 (26%), Positives = 64/146 (43%), Gaps = 16/146 (10%) Query: 25 QALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHID 84 QA+Y I G ++I+++ E + DL +F ++ GV+ + +D Sbjct: 30 QAVYAWQISGGFAKQVIAQFAH-----------EQAHEVADLAYFENLVEGVLSNRAELD 78 Query: 85 LLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPK 144 ++ L S +D I ++LR EL+ VP V+I+E + A F Sbjct: 79 TALTPYLDR--SVEEVDAIERAVLRLAAYELLYRQDVPYRVVINEAIETAKRFGSEHGHT 136 Query: 145 FINAVLDKVS---RKEEIKRSGCVSA 167 ++N VLD+ + RK E SG A Sbjct: 137 YVNGVLDRAAVEWRKVESGASGASGA 162 >gi|198282617|ref|YP_002218938.1| NusB antitermination factor [Acidithiobacillus ferrooxidans ATCC 53993] gi|218667110|ref|YP_002424808.1| transcription antitermination factor NusB [Acidithiobacillus ferrooxidans ATCC 23270] gi|198247138|gb|ACH82731.1| NusB antitermination factor [Acidithiobacillus ferrooxidans ATCC 53993] gi|218519323|gb|ACK79909.1| transcription antitermination factor NusB [Acidithiobacillus ferrooxidans ATCC 23270] Length = 147 Score = 151 bits (382), Expect = 3e-35, Method: Composition-based stats. Identities = 41/147 (27%), Positives = 70/147 (47%), Gaps = 11/147 (7%) Query: 10 LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF 69 +K+S RR +AR AAVQALYQ + EI ++ + D+ +F Sbjct: 1 MKIS-RRRLARQAAVQALYQWQMNPGHCAEIELQFTS----------DPERLQGADVAFF 49 Query: 70 RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISE 129 + + GV +D I+ + ++ + + +ILR EL + P VII+E Sbjct: 50 KSLWQGVCAAISELDPAIAEEVQDRRWADEVSEVERAILRLAACELRDYPQTPYRVIINE 109 Query: 130 YVCIAHDFFYGDEPKFINAVLDKVSRK 156 + + DF +F+NAVLDK++++ Sbjct: 110 AIELDKDFGGEQGHRFVNAVLDKLAQR 136 >gi|258654403|ref|YP_003203559.1| NusB antitermination factor [Nakamurella multipartita DSM 44233] gi|258557628|gb|ACV80570.1| NusB antitermination factor [Nakamurella multipartita DSM 44233] Length = 144 Score = 151 bits (382), Expect = 4e-35, Method: Composition-based stats. Identities = 31/139 (22%), Positives = 61/139 (43%), Gaps = 7/139 (5%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 R +R A+ L+ + G ++SE D ++ ++ G Sbjct: 4 RSKSRKRALDVLFAAEARGVDPLVVLSERMEEPTGPDRHSWTPIG------DYAEGLVRG 57 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135 ++ + +D L++ + W+ R+ + +ILR V EL+ VP V+++E V A Sbjct: 58 FVEHQDRVDTLLAEH-SRGWTVDRMPAVDRAILRIAVYELLYSTEVPPAVVVNEAVDSAK 116 Query: 136 DFFYGDEPKFINAVLDKVS 154 D P+F+N VL +++ Sbjct: 117 ILSTDDSPRFVNGVLGQIA 135 >gi|77919050|ref|YP_356865.1| transcription antitermination factor NusB [Pelobacter carbinolicus DSM 2380] gi|119390793|sp|Q3A4L2|NUSB_PELCD RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|77545133|gb|ABA88695.1| NusB antitermination factor [Pelobacter carbinolicus DSM 2380] Length = 156 Score = 151 bits (382), Expect = 4e-35, Method: Composition-based stats. Identities = 42/147 (28%), Positives = 66/147 (44%), Gaps = 5/147 (3%) Query: 13 SHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCAD----TELDVESVYLHVDLEW 68 S R R A++ +Y D G + + + +RF D D E+ Sbjct: 3 SGMRRTGRELAIKIIYSFDGTGSVEALLATFWSNFRFRDDVLGEPLEDSSQAVAEPVREF 62 Query: 69 FRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIIS 128 ++ GV + + ID LI + WS R+ + +ILR EL+ VPV VII+ Sbjct: 63 AEDLVRGVAENLEKIDGLIGEF-STNWSLERMARVDLAILRMATYELLGHLDVPVSVIIN 121 Query: 129 EYVCIAHDFFYGDEPKFINAVLDKVSR 155 E V I + + P F+N +LD++SR Sbjct: 122 EAVEIGKRYGTKETPSFVNGILDRISR 148 >gi|256827876|ref|YP_003156604.1| NusB antitermination factor [Desulfomicrobium baculatum DSM 4028] gi|256577052|gb|ACU88188.1| NusB antitermination factor [Desulfomicrobium baculatum DSM 4028] Length = 154 Score = 151 bits (382), Expect = 4e-35, Method: Composition-based stats. Identities = 32/151 (21%), Positives = 71/151 (47%), Gaps = 9/151 (5%) Query: 12 LSHRRGIARLAAVQALYQIDIIGC-STTEIISEYETYRFCADTELDVESVYLHVDLEWFR 70 ++H R R A Q +Y + S +I ++ + + +++ + + Sbjct: 1 MTHNRRHQRRFAFQVIYSLVFGQKMSKDSLIKSFDNFWTEEEFDMERQD-------SYAW 53 Query: 71 VIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEY 130 ++ GV D ID +I+ ++ W +R+ + +ILR + E++ C +P++V ++E Sbjct: 54 TLVEGVFDNYDSIDEIITQH-SQHWKLNRIAKVELTILRLSLFEMLFCPDIPIKVAMNEA 112 Query: 131 VCIAHDFFYGDEPKFINAVLDKVSRKEEIKR 161 + +A DF + F+N VLD ++ + Sbjct: 113 IELAKDFGDDNSKTFVNGVLDAAAKGAQRNE 143 >gi|319892510|ref|YP_004149385.1| Transcription termination protein NusB [Staphylococcus pseudintermedius HKU10-03] gi|317162206|gb|ADV05749.1| Transcription termination protein NusB [Staphylococcus pseudintermedius HKU10-03] gi|323464388|gb|ADX76541.1| transcription antitermination factor NusB [Staphylococcus pseudintermedius ED99] Length = 130 Score = 151 bits (381), Expect = 4e-35, Method: Composition-based stats. Identities = 42/141 (29%), Positives = 65/141 (46%), Gaps = 13/141 (9%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 R AR A Q L+Q+++ T I E ++ ++ Y +D ++ + ++ G Sbjct: 3 RKQARSQAFQTLFQLEMKNTELT--IDEAISF---------IKEDYPDLDFDFIKWLVSG 51 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135 V D + +D IS L W+ +RL ILR E+ P +VII+E V +A Sbjct: 52 VKDHQHVLDETISPHLN-GWTIARLLKTDRIILRMATFEM-NHSDTPEKVIINEAVELAK 109 Query: 136 DFFYGDEPKFINAVLDKVSRK 156 F D KFIN VL + R Sbjct: 110 QFSDDDHYKFINGVLSHIKRN 130 >gi|332977564|gb|EGK14334.1| N utilization substance protein B [Desmospora sp. 8437] Length = 148 Score = 151 bits (381), Expect = 4e-35, Method: Composition-based stats. Identities = 38/152 (25%), Positives = 60/152 (39%), Gaps = 9/152 (5%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 R R A+Q LYQ +I R + +F ++ Sbjct: 3 RRTVREKALQTLYQNEINPDGAD---------RSMKKEARSLHDEAGEEASAFFLRLVRT 53 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135 V+ +D +I L + W+ SRL + SILR V EL+ +P ++E V +A Sbjct: 54 VIRNMPRLDPVIQGYLKQDWTLSRLSPVDRSILRMAVCELLYEEEIPEGASLNEAVELAK 113 Query: 136 DFFYGDEPKFINAVLDKVSRKEEIKRSGCVSA 167 F + +FIN VL + + + R VS Sbjct: 114 TFSTEESARFINGVLGSMVKNLDEVRKSAVSG 145 >gi|322420503|ref|YP_004199726.1| NusB antitermination factor [Geobacter sp. M18] gi|320126890|gb|ADW14450.1| NusB antitermination factor [Geobacter sp. M18] Length = 145 Score = 151 bits (381), Expect = 4e-35, Method: Composition-based stats. Identities = 37/140 (26%), Positives = 67/140 (47%), Gaps = 6/140 (4%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISE-YETYRFCADTELDVESVYLHVDLEWFRVIIH 74 R R A+QALY D++ + +E++ D L S + +++ Sbjct: 4 RREGRELALQALYSKDLVLQDANTTLKRIFESFGEGEDPTLSANSKAY----AFASELVN 59 Query: 75 GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134 GV+ Q ID I+ ++ WS +R+ + +ILR V EL+ +P V ++E + +A Sbjct: 60 GVVTHLQEIDGRIAEK-SKHWSMARMARVDLNILRLAVFELLYRPDIPKNVTMNEAIEVA 118 Query: 135 HDFFYGDEPKFINAVLDKVS 154 F D F+N +LD+++ Sbjct: 119 KKFGADDSASFVNGILDEIA 138 >gi|23014664|ref|ZP_00054469.1| COG0781: Transcription termination factor [Magnetospirillum magnetotacticum MS-1] Length = 156 Score = 151 bits (381), Expect = 4e-35, Method: Composition-based stats. Identities = 46/153 (30%), Positives = 73/153 (47%), Gaps = 5/153 (3%) Query: 14 HRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVII 73 +R ARLAAVQ LYQ+++ G + + + R + + D ++ Sbjct: 9 AKRSAARLAAVQVLYQMEMTGTDCERALQDAKDRRAA-----EPKGRMADPDSSLLNQVV 63 Query: 74 HGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCI 133 GV + + ID + L+ W+ RL+ +L +I+R G EL P V ISE+V + Sbjct: 64 RGVSAQLEDIDRHVGGALSGDWTVERLEAVLRAIIRGGAWELSARPQTPARVCISEWVDV 123 Query: 134 AHDFFYGDEPKFINAVLDKVSRKEEIKRSGCVS 166 AH F+ G EP +NAVLD +++ G Sbjct: 124 AHAFYSGPEPGLVNAVLDHLAQTLRGGEMGKGG 156 >gi|325833527|ref|ZP_08165976.1| transcription antitermination factor NusB [Eggerthella sp. HGA1] gi|325485451|gb|EGC87920.1| transcription antitermination factor NusB [Eggerthella sp. HGA1] Length = 200 Score = 151 bits (381), Expect = 4e-35, Method: Composition-based stats. Identities = 44/159 (27%), Positives = 71/159 (44%), Gaps = 14/159 (8%) Query: 12 LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71 H R AR AA+Q LY +I S I E D E+ + Sbjct: 4 KRHERTSARRAALQVLYTSEITDESPAAIA------------EGDRRLEEDGPLPEYALM 51 Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131 ++ GV + ID ++ +E WS +R+ ++ SILR E++ VP V I+E V Sbjct: 52 LVRGVESHRIAIDNHLA-ATSENWSLARMPIVDRSILRLATFEMMYIDDVPTSVTINEAV 110 Query: 132 CIAHDFFYGD-EPKFINAVLDKVSRKEEIKRSGCVSAIT 169 +A DF D +F+N +L ++++ E + S A + Sbjct: 111 ELAKDFGGEDESHRFVNGILGRIAKMLEGEESQEADAPS 149 >gi|257456352|ref|ZP_05621549.1| transcription antitermination factor NusB [Treponema vincentii ATCC 35580] gi|257446438|gb|EEV21484.1| transcription antitermination factor NusB [Treponema vincentii ATCC 35580] Length = 147 Score = 151 bits (381), Expect = 5e-35, Method: Composition-based stats. Identities = 41/145 (28%), Positives = 67/145 (46%), Gaps = 9/145 (6%) Query: 12 LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71 ++ R R+ A QALY D S +++ R + D + ++ Sbjct: 1 MAIGRRRGRILAFQALYAWDAGSLSPDDLLPFPWVERTGKE--------LHDEDFLFSQL 52 Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131 + G ++ ID LI+ L E W F+RL ++ +ILR G L+ ++I+E V Sbjct: 53 LFLGAVEHIDEIDGLIAKNL-ENWDFNRLKLVDKAILRLGTYSLLFQQDTDPRIVINEAV 111 Query: 132 CIAHDFFYGDEPKFINAVLDKVSRK 156 IA + D KF+NAVLD + R+ Sbjct: 112 TIARIYGTDDSFKFVNAVLDSIKRE 136 >gi|87121731|ref|ZP_01077618.1| NusB protein [Marinomonas sp. MED121] gi|86162982|gb|EAQ64260.1| NusB protein [Marinomonas sp. MED121] Length = 167 Score = 151 bits (381), Expect = 5e-35, Method: Composition-based stats. Identities = 42/150 (28%), Positives = 68/150 (45%), Gaps = 13/150 (8%) Query: 12 LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71 S R AR A+QA+YQ + EI +++ V+ D +FR Sbjct: 23 RSQLRSAARSFALQAVYQWQMNHAPVNEIEAQFA-----------VDHDLGTCDKAYFRE 71 Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131 ++ GV + + +D L L + LD I + LR G EL E VP V I+E V Sbjct: 72 LLQGVTAKAKSLDDLFEELLDR--PLAELDPIELATLRIGSYELAERLDVPYRVAINESV 129 Query: 132 CIAHDFFYGDEPKFINAVLDKVSRKEEIKR 161 +A F + K++N +LDK++++ + Sbjct: 130 ELAKSFGASESHKYVNGILDKLAQRVRREE 159 >gi|239932425|ref|ZP_04689378.1| transcription antitermination protein NusB [Streptomyces ghanaensis ATCC 14672] gi|291440791|ref|ZP_06580181.1| transcription antitermination protein NusB [Streptomyces ghanaensis ATCC 14672] gi|291343686|gb|EFE70642.1| transcription antitermination protein NusB [Streptomyces ghanaensis ATCC 14672] Length = 144 Score = 151 bits (381), Expect = 5e-35, Method: Composition-based stats. Identities = 39/147 (26%), Positives = 69/147 (46%), Gaps = 12/147 (8%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 R AR A Q L++ D G +++++ + + V E+ ++ G Sbjct: 4 RNTARKRAFQILFEGDQRGADVLTVLADWIRHSRTDTRQPPVS--------EYTMQLVEG 55 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135 + Q ID LI+ + W+ R+ ++ SILR G EL+ P V++ E V +A Sbjct: 56 YAEHAQRIDGLIAQY-SVGWTLDRMPVVDRSILRLGAYELLWVDETPDAVVLDEMVQLAK 114 Query: 136 DFFYGDEPKFINAVLDKVSRKEEIKRS 162 +F + P FIN +L ++ +E+K S Sbjct: 115 EFSTDESPSFINGLLGRL---KELKPS 138 >gi|296161946|ref|ZP_06844746.1| NusB antitermination factor [Burkholderia sp. Ch1-1] gi|295887822|gb|EFG67640.1| NusB antitermination factor [Burkholderia sp. Ch1-1] Length = 144 Score = 150 bits (380), Expect = 5e-35, Method: Composition-based stats. Identities = 41/153 (26%), Positives = 65/153 (42%), Gaps = 15/153 (9%) Query: 10 LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF 69 +K + RR R A Q LYQ + G EI D +L + D E Sbjct: 1 MKSARRRS--RELATQGLYQWLLSGSPGGEI-----------DAQLRGAQGFDKADHEHL 47 Query: 70 RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISE 129 ++HGV+ + + I CL +L + ++L EL +P V+I+E Sbjct: 48 NALLHGVIRDSEALSADIVPCLDR--PIEQLSPVERAVLLVAAFELKNHVDIPYRVVINE 105 Query: 130 YVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRS 162 V +A F D K++N VLDK+S + + + Sbjct: 106 AVELAKTFGGADGYKYVNGVLDKLSAQLRVDET 138 >gi|299067743|emb|CBJ38952.1| antitermination factor (N utilization substance B) (transcriptional antiterminator) [Ralstonia solanacearum CMR15] Length = 155 Score = 150 bits (380), Expect = 5e-35, Method: Composition-based stats. Identities = 35/163 (21%), Positives = 65/163 (39%), Gaps = 15/163 (9%) Query: 1 MTIQDNKKDLKLSHR--RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVE 58 MT ++ K + R AR A+Q LYQ + + + Sbjct: 1 MTQDNSPAKPKAPPKSARRRARELALQGLYQWLLNRNDPGVVEAHLHD-----------A 49 Query: 59 SVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIEC 118 + D F ++HG + + + + L + L + + L G EL+ C Sbjct: 50 QGFNKADRAHFDALLHGAIREEATLTESFTPFLDR--PVAELSPVERAALLVGAYELVHC 107 Query: 119 HSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKR 161 +P +V+I+E V +A F + K++N VLDK++ + + Sbjct: 108 VDIPYKVVINEAVELAKTFGGVEGYKYVNGVLDKLAAQVRAEE 150 >gi|240170738|ref|ZP_04749397.1| transcription antitermination protein NusB [Mycobacterium kansasii ATCC 12478] Length = 174 Score = 150 bits (380), Expect = 5e-35, Method: Composition-based stats. Identities = 41/146 (28%), Positives = 63/146 (43%), Gaps = 9/146 (6%) Query: 8 KDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLE 67 K K R AR AV L++ + G S E++ L + Sbjct: 5 KPGKPVKGRHQARKRAVDVLFEAEARGMSPLEVVESRTA--------LAAAKPEVAPLHP 56 Query: 68 WFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVII 127 + + GV + HID LI++ L + W+ RL + +ILR V EL+ VP V + Sbjct: 57 YTAAVARGVSEDAAHIDDLIAAHL-QGWTLDRLPAVDRAILRVSVWELLHADDVPEPVAV 115 Query: 128 SEYVCIAHDFFYGDEPKFINAVLDKV 153 E V +A + + P F+N VL +V Sbjct: 116 DEAVELAKELSTDESPGFVNGVLGQV 141 >gi|167586433|ref|ZP_02378821.1| NusB antitermination factor [Burkholderia ubonensis Bu] Length = 145 Score = 150 bits (380), Expect = 6e-35, Method: Composition-based stats. Identities = 45/159 (28%), Positives = 68/159 (42%), Gaps = 19/159 (11%) Query: 10 LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF 69 +K S RR +R A Q LYQ + S+ EI D +L Y D + Sbjct: 1 MKKSARR-QSRELATQGLYQWLLSNASSGEI-----------DAQLRGALGYDKADKDLL 48 Query: 70 RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISE 129 I+HGV+ + ++ CL +L I ++L EL P VII+E Sbjct: 49 DAILHGVIREHATLAEALTPCLDR--PIDQLSPIERAVLLIATFELTHHVETPYRVIINE 106 Query: 130 YVCIAHDFFYGDEPKFINAVLDKVSRKE-----EIKRSG 163 V + F D K++N VLDK++ K + +R+G Sbjct: 107 AVELTKTFGGSDGYKYVNGVLDKLAAKLRPAETQARRNG 145 >gi|317490198|ref|ZP_07948686.1| transcription antitermination factor NusB [Eggerthella sp. 1_3_56FAA] gi|316910692|gb|EFV32313.1| transcription antitermination factor NusB [Eggerthella sp. 1_3_56FAA] Length = 200 Score = 150 bits (380), Expect = 6e-35, Method: Composition-based stats. Identities = 43/159 (27%), Positives = 70/159 (44%), Gaps = 14/159 (8%) Query: 12 LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71 H R AR AA+Q LY +I S I E D E+ + Sbjct: 4 KRHERTSARRAALQVLYTSEITDESPAAIA------------EGDRRLEEDGPLPEYALM 51 Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131 ++ GV + ID ++ +E WS +R+ ++ SILR E++ VP V I+E V Sbjct: 52 LVRGVESHRIAIDNHLA-ATSENWSLARMPIVDRSILRLATFEMMYIDDVPTSVTINEAV 110 Query: 132 CIAHDFFYGD-EPKFINAVLDKVSRKEEIKRSGCVSAIT 169 +A DF D +F+N +L ++++ E + A + Sbjct: 111 ELAKDFGGEDESHRFVNGILGRIAKMLEGEEGQEADAPS 149 >gi|256826969|ref|YP_003150928.1| transcription antitermination factor NusB [Cryptobacterium curtum DSM 15641] gi|256583112|gb|ACU94246.1| transcription antitermination factor NusB [Cryptobacterium curtum DSM 15641] Length = 162 Score = 150 bits (380), Expect = 6e-35, Method: Composition-based stats. Identities = 41/150 (27%), Positives = 74/150 (49%), Gaps = 14/150 (9%) Query: 10 LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF 69 + H R +AR AVQ LY+ +I +EI+ D D ++ + Sbjct: 1 MAKRHERTLARRMAVQVLYEGEITDTLASEIV-------LRPDAVPDGGAL-----PAYA 48 Query: 70 RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISE 129 ++ GV + ID I++ +E WS R+ ++ +I+R V E+ C VP+ V I+E Sbjct: 49 VSLVEGVCAHRVAIDNKIAAA-SENWSVGRMPLVDRAIMRLAVFEMTHCDDVPLSVSINE 107 Query: 130 YVCIAHDFFY-GDEPKFINAVLDKVSRKEE 158 V +A +F D +F+N +L +++R++ Sbjct: 108 AVELAKEFGGADDSARFVNGILGRIARQDN 137 >gi|196232646|ref|ZP_03131498.1| NusB antitermination factor [Chthoniobacter flavus Ellin428] gi|196223408|gb|EDY17926.1| NusB antitermination factor [Chthoniobacter flavus Ellin428] Length = 151 Score = 150 bits (380), Expect = 6e-35, Method: Composition-based stats. Identities = 40/150 (26%), Positives = 64/150 (42%), Gaps = 9/150 (6%) Query: 15 RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74 +R R AAVQ LYQID+ G + +F ++ + + Sbjct: 3 KRREGREAAVQYLYQIDLSGETPVNAE------QFWMLRSGPGKAPVAPKTRIFAEQLAL 56 Query: 75 GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134 GV + ID I T + RL ++ +ILR + EL+ V +II+E + +A Sbjct: 57 GVRKHLEEIDGYIKKY-TANYELDRLAVVDRNILRVAIYELLHSPDVAPVIIINEAIEVA 115 Query: 135 HDFFYGDEPKFINAVLDKVSRKEEIKRSGC 164 F F+N +LD++ KEE+ R Sbjct: 116 KKFGTDKSGGFVNGILDRI--KEEVGRPAR 143 >gi|205374079|ref|ZP_03226879.1| transcription antitermination protein NusB [Bacillus coahuilensis m4-4] Length = 129 Score = 150 bits (380), Expect = 6e-35, Method: Composition-based stats. Identities = 46/139 (33%), Positives = 68/139 (48%), Gaps = 16/139 (11%) Query: 15 RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74 +R AR A+QAL+Q+D+ S E ++ ++E+D ++ ++ Sbjct: 2 KRHTAREKALQALFQMDMSQLSGQEALT-----NVTEESEMD----------DYLSKLVL 46 Query: 75 GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134 + ID I L EKWSF RL + SILR V E++ VP +V I+E + +A Sbjct: 47 QTETNLEVIDQKIRENL-EKWSFERLAKVDRSILRLTVCEMMFIEDVPNKVAINEAIELA 105 Query: 135 HDFFYGDEPKFINAVLDKV 153 F KFINAVL KV Sbjct: 106 KTFGDDQSSKFINAVLSKV 124 >gi|69244729|ref|ZP_00602993.1| Antitermination protein NusB [Enterococcus faecium DO] gi|227550442|ref|ZP_03980491.1| transcription antitermination protein NusB [Enterococcus faecium TX1330] gi|257879351|ref|ZP_05659004.1| antitermination protein NusB [Enterococcus faecium 1,230,933] gi|257881783|ref|ZP_05661436.1| antitermination protein NusB [Enterococcus faecium 1,231,502] gi|257888470|ref|ZP_05668123.1| antitermination protein NusB [Enterococcus faecium 1,141,733] gi|257890177|ref|ZP_05669830.1| antitermination protein NusB [Enterococcus faecium 1,231,410] gi|257897155|ref|ZP_05676808.1| antitermination protein NusB [Enterococcus faecium Com12] gi|257899153|ref|ZP_05678806.1| antitermination protein NusB [Enterococcus faecium Com15] gi|258615757|ref|ZP_05713527.1| transcription antitermination protein NusB [Enterococcus faecium DO] gi|260558793|ref|ZP_05830982.1| antitermination protein NusB [Enterococcus faecium C68] gi|261206503|ref|ZP_05921203.1| antitermination protein NusB [Enterococcus faecium TC 6] gi|289565413|ref|ZP_06445862.1| transcription antitermination factor NusB [Enterococcus faecium D344SRF] gi|293377380|ref|ZP_06623584.1| transcription antitermination factor NusB [Enterococcus faecium PC4.1] gi|293553169|ref|ZP_06673806.1| transcription antitermination factor NusB [Enterococcus faecium E1039] gi|293560490|ref|ZP_06676982.1| transcription antitermination factor NusB [Enterococcus faecium E1162] gi|293568316|ref|ZP_06679640.1| transcription antitermination factor NusB [Enterococcus faecium E1071] gi|293571749|ref|ZP_06682768.1| transcription antitermination factor NusB [Enterococcus faecium E980] gi|294614729|ref|ZP_06694631.1| transcription antitermination factor NusB [Enterococcus faecium E1636] gi|294618975|ref|ZP_06698470.1| transcription antitermination factor NusB [Enterococcus faecium E1679] gi|294621587|ref|ZP_06700752.1| transcription antitermination factor NusB [Enterococcus faecium U0317] gi|314937887|ref|ZP_07845203.1| transcription antitermination factor NusB [Enterococcus faecium TX0133a04] gi|314941378|ref|ZP_07848271.1| transcription antitermination factor NusB [Enterococcus faecium TX0133C] gi|314950137|ref|ZP_07853423.1| transcription antitermination factor NusB [Enterococcus faecium TX0082] gi|314951322|ref|ZP_07854376.1| transcription antitermination factor NusB [Enterococcus faecium TX0133A] gi|314992847|ref|ZP_07858248.1| transcription antitermination factor NusB [Enterococcus faecium TX0133B] gi|314998051|ref|ZP_07862939.1| transcription antitermination factor NusB [Enterococcus faecium TX0133a01] gi|68196320|gb|EAN10749.1| Antitermination protein NusB [Enterococcus faecium DO] gi|227180343|gb|EEI61315.1| transcription antitermination protein NusB [Enterococcus faecium TX1330] gi|257813579|gb|EEV42337.1| antitermination protein NusB [Enterococcus faecium 1,230,933] gi|257817441|gb|EEV44769.1| antitermination protein NusB [Enterococcus faecium 1,231,502] gi|257824524|gb|EEV51456.1| antitermination protein NusB [Enterococcus faecium 1,141,733] gi|257826537|gb|EEV53163.1| antitermination protein NusB [Enterococcus faecium 1,231,410] gi|257833720|gb|EEV60141.1| antitermination protein NusB [Enterococcus faecium Com12] gi|257837065|gb|EEV62139.1| antitermination protein NusB [Enterococcus faecium Com15] gi|260075252|gb|EEW63565.1| antitermination protein NusB [Enterococcus faecium C68] gi|260079213|gb|EEW66904.1| antitermination protein NusB [Enterococcus faecium TC 6] gi|289162742|gb|EFD10593.1| transcription antitermination factor NusB [Enterococcus faecium D344SRF] gi|291589028|gb|EFF20852.1| transcription antitermination factor NusB [Enterococcus faecium E1071] gi|291592467|gb|EFF24074.1| transcription antitermination factor NusB [Enterococcus faecium E1636] gi|291594636|gb|EFF26018.1| transcription antitermination factor NusB [Enterococcus faecium E1679] gi|291598752|gb|EFF29804.1| transcription antitermination factor NusB [Enterococcus faecium U0317] gi|291602579|gb|EFF32794.1| transcription antitermination factor NusB [Enterococcus faecium E1039] gi|291605638|gb|EFF35080.1| transcription antitermination factor NusB [Enterococcus faecium E1162] gi|291608206|gb|EFF37509.1| transcription antitermination factor NusB [Enterococcus faecium E980] gi|292644072|gb|EFF62178.1| transcription antitermination factor NusB [Enterococcus faecium PC4.1] gi|313587893|gb|EFR66738.1| transcription antitermination factor NusB [Enterococcus faecium TX0133a01] gi|313592651|gb|EFR71496.1| transcription antitermination factor NusB [Enterococcus faecium TX0133B] gi|313596539|gb|EFR75384.1| transcription antitermination factor NusB [Enterococcus faecium TX0133A] gi|313599801|gb|EFR78644.1| transcription antitermination factor NusB [Enterococcus faecium TX0133C] gi|313642745|gb|EFS07325.1| transcription antitermination factor NusB [Enterococcus faecium TX0133a04] gi|313643578|gb|EFS08158.1| transcription antitermination factor NusB [Enterococcus faecium TX0082] Length = 149 Score = 150 bits (380), Expect = 6e-35, Method: Composition-based stats. Identities = 38/150 (25%), Positives = 63/150 (42%), Gaps = 3/150 (2%) Query: 10 LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF 69 + R R A+QAL+ +D T E D + ES ++ V + Sbjct: 1 MNKELSRHEIREMALQALFPLDFNADLTKEDAIFNAIELDHRDMINEDESEFVPV---YL 57 Query: 70 RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISE 129 ++ GV +K +D +I L W +R+ + ILR + E+ VP V ++E Sbjct: 58 DTLVGGVCAKKDELDKVIEKHLKNNWHINRISKMDLVILRIAIFEMTYVTDVPAAVALNE 117 Query: 130 YVCIAHDFFYGDEPKFINAVLDKVSRKEEI 159 + +A F KF+N VL V ++ E Sbjct: 118 AIELAKTFSDDRSRKFVNGVLSNVLKELEA 147 >gi|91784900|ref|YP_560106.1| transcription antitermination protein NusB [Burkholderia xenovorans LB400] gi|119372284|sp|Q13V35|NUSB_BURXL RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|91688854|gb|ABE32054.1| NusB antitermination factor [Burkholderia xenovorans LB400] Length = 144 Score = 150 bits (380), Expect = 6e-35, Method: Composition-based stats. Identities = 43/156 (27%), Positives = 69/156 (44%), Gaps = 18/156 (11%) Query: 10 LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF 69 +K + RR R A Q LYQ + G EI D +L + D E Sbjct: 1 MKSARRRS--RELATQGLYQWLLSGSPGGEI-----------DAQLRGAQGFDKADHEHL 47 Query: 70 RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISE 129 ++HGV+ + + I+ CL +L + ++L EL +P V+I+E Sbjct: 48 DAVLHGVIRDSEALSAAIAPCLDR--PIEQLSPVERAVLLVAAFELKNHLDIPYRVVINE 105 Query: 130 YVCIAHDFFYGDEPKFINAVLDKVS---RKEEIKRS 162 V +A F D K++N VLDK+S R++E + + Sbjct: 106 AVELAKTFGGADGYKYVNGVLDKLSAQLREDETQAA 141 >gi|256379255|ref|YP_003102915.1| NusB antitermination factor [Actinosynnema mirum DSM 43827] gi|255923558|gb|ACU39069.1| NusB antitermination factor [Actinosynnema mirum DSM 43827] Length = 139 Score = 150 bits (380), Expect = 6e-35, Method: Composition-based stats. Identities = 40/139 (28%), Positives = 64/139 (46%), Gaps = 13/139 (9%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 R AR AV +Y+ D G ++S+ V S + E+ ++ G Sbjct: 4 RTKARKRAVDVIYEADQRGVDAVTLLSD------------RVGSTDVPPINEYTVSLVEG 51 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135 V + ID LIS +E W+ R+ + ++LR G+ EL+ VP V I E V +A Sbjct: 52 VTAHRARIDDLISEH-SEGWTLQRMPAVDRAVLRVGLYELLWAADVPDAVAIDEAVELAK 110 Query: 136 DFFYGDEPKFINAVLDKVS 154 D P+F+N VL +++ Sbjct: 111 GLSTDDSPRFVNGVLGRIA 129 >gi|254507845|ref|ZP_05119975.1| transcription antitermination factor NusB [Vibrio parahaemolyticus 16] gi|323491732|ref|ZP_08096910.1| transcription antitermination protein NusB [Vibrio brasiliensis LMG 20546] gi|323497970|ref|ZP_08102979.1| transcription antitermination protein NusB [Vibrio sinaloensis DSM 21326] gi|219549218|gb|EED26213.1| transcription antitermination factor NusB [Vibrio parahaemolyticus 16] gi|323314094|gb|EGA67180.1| transcription antitermination protein NusB [Vibrio brasiliensis LMG 20546] gi|323317015|gb|EGA70017.1| transcription antitermination protein NusB [Vibrio sinaloensis DSM 21326] Length = 155 Score = 150 bits (379), Expect = 6e-35, Method: Composition-based stats. Identities = 34/140 (24%), Positives = 61/140 (43%), Gaps = 5/140 (3%) Query: 24 VQALYQIDIIGCSTTEIISEYETYRFCADTEL---DVESVYLHVDLEWFRVIIHGVMDRK 80 +QA+Y I + I ++ + + E + D+ +FR ++ GV+ Sbjct: 18 LQAIYSWQITKENVATIEEQFLSGGKYDEEEHHASEPALSTPDTDVAYFRDLLTGVVLSH 77 Query: 81 QHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYG 140 +D I LDM+ ++LR + E+ VP +V+I+E + +A F Sbjct: 78 TELDSKIRPYTAR--PMQDLDMMELALLRLAMYEMTRREDVPYKVVINEAIELAKVFAAE 135 Query: 141 DEPKFINAVLDKVSRKEEIK 160 + KF+N VLDK + K Sbjct: 136 ESHKFVNGVLDKAAPHVRKK 155 >gi|38233925|ref|NP_939692.1| transcription antitermination protein NusB [Corynebacterium diphtheriae NCTC 13129] gi|81564845|sp|Q6NH08|NUSB_CORDI RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|38200186|emb|CAE49867.1| Putative transcription termination related protein [Corynebacterium diphtheriae] Length = 182 Score = 150 bits (379), Expect = 6e-35, Method: Composition-based stats. Identities = 41/168 (24%), Positives = 76/168 (45%), Gaps = 7/168 (4%) Query: 1 MTIQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESV 60 M Q+ + K R AR AV L++ ++ I+ + T+++ Sbjct: 1 MKSQETRSSWKRRGSRYKARRRAVDILFEAEMRDIDPVAIVEDRVVLSRLNGTDVNQVP- 59 Query: 61 YLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHS 120 + + I+ G +D LI++ L E WS R+ + +ILR V ELI Sbjct: 60 ------SYTKEIVSGAAMELDRLDELIAAHLAEDWSLERIMTVDRAILRVSVWELIFNPD 113 Query: 121 VPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRSGCVSAI 168 VP+ I E V +A ++ P +++A+LD +++ + R+G V+ + Sbjct: 114 VPLATAIIEGVELASEYSTDVSPAYVHALLDSIAKNIDEYRAGSVTPV 161 >gi|167563762|ref|ZP_02356678.1| transcription antitermination protein NusB [Burkholderia oklahomensis EO147] gi|167570906|ref|ZP_02363780.1| transcription antitermination protein NusB [Burkholderia oklahomensis C6786] Length = 145 Score = 150 bits (379), Expect = 7e-35, Method: Composition-based stats. Identities = 44/147 (29%), Positives = 61/147 (41%), Gaps = 14/147 (9%) Query: 10 LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF 69 +K S RR +R A Q LYQ + + EI D +L Y D Sbjct: 1 MKKSARR-QSRELATQGLYQWLLSNAAPGEI-----------DAQLRGALGYDKADKTLL 48 Query: 70 RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISE 129 I+HGV+ + IS L +L + ++L EL P VII+E Sbjct: 49 DTILHGVIREHAALAEAISPSLDR--PIDQLSPVERAVLLIATYELTHQIETPYRVIINE 106 Query: 130 YVCIAHDFFYGDEPKFINAVLDKVSRK 156 V +A F D K++N VLDK+S K Sbjct: 107 AVELAKTFGGSDGYKYVNGVLDKLSVK 133 >gi|144897828|emb|CAM74692.1| NusB antitermination factor [Magnetospirillum gryphiswaldense MSR-1] Length = 160 Score = 150 bits (379), Expect = 7e-35, Method: Composition-based stats. Identities = 50/164 (30%), Positives = 82/164 (50%), Gaps = 8/164 (4%) Query: 7 KKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDL 66 +K + RR ARLAAVQALY ++I G + + + E+ + + D+ Sbjct: 2 RKPNPGATRRSAARLAAVQALYSMEITGVTAEQALVEFRQR-----LDSEPRGKLAEPDM 56 Query: 67 EWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVI 126 + +++ G +D I+ L W+ RL+ +L +ILRAG EL P V Sbjct: 57 DLVALLVRGASFDGGDLDAHIARGLARDWTVDRLESVLRAILRAGAYELKARPQTPARVA 116 Query: 127 ISEYVCIAHDFFYGDEPKFINAVLDKVSRK---EEIKRSGCVSA 167 I+EYV + H F+ G EP +NAV+D+++R E + G ++ Sbjct: 117 ITEYVDVTHAFYSGPEPGLVNAVMDRMARALRPAEFEGGGAAAS 160 >gi|310642666|ref|YP_003947424.1| transcription antitermination factor nusb [Paenibacillus polymyxa SC2] gi|309247616|gb|ADO57183.1| Transcription antitermination factor NusB [Paenibacillus polymyxa SC2] Length = 149 Score = 150 bits (379), Expect = 7e-35, Method: Composition-based stats. Identities = 38/144 (26%), Positives = 67/144 (46%), Gaps = 2/144 (1%) Query: 15 RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74 +R +AR AVQ++Y +++ + E +V V + + Sbjct: 2 KRRLARELAVQSMYHMEMNEVDAAAAVDMLLQEAAEE-NEAEVVIKNAEVLRAYVLEHVR 60 Query: 75 GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134 G + K+ ID L++ L + W SRL + ILR V E+I VP +V ++E + ++ Sbjct: 61 GTWEHKEAIDGLLADYL-KGWQISRLSRVDRQILRLAVYEMIFREDVPAKVAVNEAIELS 119 Query: 135 HDFFYGDEPKFINAVLDKVSRKEE 158 F + KF+N VL +V ++ E Sbjct: 120 KHFGTEESGKFVNGVLGRVIQELE 143 >gi|83746193|ref|ZP_00943247.1| N utilization substance protein B [Ralstonia solanacearum UW551] gi|207728164|ref|YP_002256558.1| n utilization substance protein b [Ralstonia solanacearum MolK2] gi|207744100|ref|YP_002260492.1| n utilization substance protein b homolog (protein nusb) [Ralstonia solanacearum IPO1609] gi|300704874|ref|YP_003746477.1| antitermination factor [Ralstonia solanacearum CFBP2957] gi|83727159|gb|EAP74283.1| N utilization substance protein B [Ralstonia solanacearum UW551] gi|206591409|emb|CAQ57021.1| n utilization substance protein b homolog (protein nusb) [Ralstonia solanacearum MolK2] gi|206595504|emb|CAQ62431.1| n utilization substance protein b homolog (protein nusb) [Ralstonia solanacearum IPO1609] gi|299072538|emb|CBJ43888.1| antitermination factor (N utilization substance B) (transcriptional antiterminator) [Ralstonia solanacearum CFBP2957] Length = 155 Score = 150 bits (379), Expect = 7e-35, Method: Composition-based stats. Identities = 35/156 (22%), Positives = 64/156 (41%), Gaps = 15/156 (9%) Query: 1 MTIQDNKKDLKLSHR--RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVE 58 MT ++ K + + R AR A+Q LYQ + + + Sbjct: 1 MTQDNSPAKPKAAPKSARRRARELALQGLYQWLLNRNDPGVVEAHLHD-----------A 49 Query: 59 SVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIEC 118 + D F ++HG + + + + L + L + + L G EL+ C Sbjct: 50 QGFNKADRAHFDALLHGAIREEATLTESFTPFLDR--PVAELSPVERAALLVGAYELVHC 107 Query: 119 HSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVS 154 +P +V+I+E V +A F + K++N VLDK++ Sbjct: 108 IDIPYKVVINEAVELAKTFGGVEGYKYVNGVLDKLA 143 >gi|318057074|ref|ZP_07975797.1| transcription antitermination protein NusB [Streptomyces sp. SA3_actG] gi|318080976|ref|ZP_07988308.1| transcription antitermination protein NusB [Streptomyces sp. SA3_actF] gi|333028359|ref|ZP_08456423.1| putative transcription antitermination protein NusB [Streptomyces sp. Tu6071] gi|332748211|gb|EGJ78652.1| putative transcription antitermination protein NusB [Streptomyces sp. Tu6071] Length = 144 Score = 150 bits (379), Expect = 7e-35, Method: Composition-based stats. Identities = 32/138 (23%), Positives = 62/138 (44%), Gaps = 9/138 (6%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 R AR A Q L++ D G +++++ + + V E+ ++ G Sbjct: 4 RNTARKRAFQILFEADQRGTDVLTVLADWVRHSRGDTQQPPVS--------EYTMELVEG 55 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135 + + ID +I+ + W R+ ++ +I+R G EL+ P V++ E V +A Sbjct: 56 YAEHARRIDEVIAKY-SVDWPLDRMPVVDRNIVRLGAHELVWVDGTPDAVVMDEAVELAK 114 Query: 136 DFFYGDEPKFINAVLDKV 153 +F D P F+N +L + Sbjct: 115 EFSTDDSPAFVNGLLGRF 132 >gi|125973352|ref|YP_001037262.1| NusB antitermination factor [Clostridium thermocellum ATCC 27405] gi|256005458|ref|ZP_05430421.1| NusB antitermination factor [Clostridium thermocellum DSM 2360] gi|281417552|ref|ZP_06248572.1| NusB antitermination factor [Clostridium thermocellum JW20] gi|166215686|sp|A3DDP0|NUSB_CLOTH RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|125713577|gb|ABN52069.1| NusB antitermination factor [Clostridium thermocellum ATCC 27405] gi|255990598|gb|EEU00717.1| NusB antitermination factor [Clostridium thermocellum DSM 2360] gi|281408954|gb|EFB39212.1| NusB antitermination factor [Clostridium thermocellum JW20] gi|316940416|gb|ADU74450.1| NusB antitermination factor [Clostridium thermocellum DSM 1313] Length = 145 Score = 150 bits (379), Expect = 7e-35, Method: Composition-based stats. Identities = 35/140 (25%), Positives = 63/140 (45%), Gaps = 12/140 (8%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 R +R A++ +YQ++I S E I+ + D E+ ++ G Sbjct: 3 RRASREIAMKLIYQLEIQKDSREEQINNTLEQYDLNEN-----------DREYILDVVKG 51 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135 V ++ ID I ++ W SR+ + +ILR + E+ +P V I+E V +A Sbjct: 52 VFKNQEEIDGTIEKF-SKGWKLSRISKVDLAILRLAIYEMCHRDDIPFTVAINEAVELAK 110 Query: 136 DFFYGDEPKFINAVLDKVSR 155 ++ + FIN +L KV + Sbjct: 111 NYSGEESGSFINGILGKVVK 130 >gi|78065528|ref|YP_368297.1| transcription antitermination protein NusB [Burkholderia sp. 383] gi|119372282|sp|Q39IR3|NUSB_BURS3 RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|77966273|gb|ABB07653.1| NusB antitermination factor [Burkholderia sp. 383] Length = 145 Score = 150 bits (379), Expect = 7e-35, Method: Composition-based stats. Identities = 45/159 (28%), Positives = 68/159 (42%), Gaps = 19/159 (11%) Query: 10 LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF 69 +K S RR +R A Q LYQ + S+ EI D +L Y D E Sbjct: 1 MKKSARR-QSRELATQGLYQWLLSNASSGEI-----------DAQLRGALGYDKADKELL 48 Query: 70 RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISE 129 I+HGV+ + ++ L +L + ++L EL P VII+E Sbjct: 49 EAILHGVIREHATLVEALTPSLDR--PIEQLSPVERAVLLIATFELTHHVETPYRVIINE 106 Query: 130 YVCIAHDFFYGDEPKFINAVLDKVSRKE-----EIKRSG 163 V +A F D K++N VLDK++ K + +R+G Sbjct: 107 AVELAKTFGGSDGYKYVNGVLDKLAAKLRPAETQARRNG 145 >gi|31793715|ref|NP_856208.1| transcription antitermination protein NusB [Mycobacterium bovis AF2122/97] gi|121638417|ref|YP_978641.1| transcription antitermination protein NusB [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|215427926|ref|ZP_03425845.1| transcription antitermination protein NusB [Mycobacterium tuberculosis T92] gi|215431478|ref|ZP_03429397.1| transcription antitermination protein NusB [Mycobacterium tuberculosis EAS054] gi|219558534|ref|ZP_03537610.1| transcription antitermination protein NusB [Mycobacterium tuberculosis T17] gi|224990911|ref|YP_002645598.1| transcription antitermination protein [Mycobacterium bovis BCG str. Tokyo 172] gi|260187545|ref|ZP_05765019.1| transcription antitermination protein NusB [Mycobacterium tuberculosis CPHL_A] gi|260201657|ref|ZP_05769148.1| transcription antitermination protein NusB [Mycobacterium tuberculosis T46] gi|260205850|ref|ZP_05773341.1| transcription antitermination protein NusB [Mycobacterium tuberculosis K85] gi|289444068|ref|ZP_06433812.1| transcription antitermination factor NusB [Mycobacterium tuberculosis T46] gi|289448181|ref|ZP_06437925.1| N utilization substance protein B nusB [Mycobacterium tuberculosis CPHL_A] gi|289570699|ref|ZP_06450926.1| N utilization substance protein B nusB [Mycobacterium tuberculosis T17] gi|289575238|ref|ZP_06455465.1| N utilization substance protein B nusB [Mycobacterium tuberculosis K85] gi|289751150|ref|ZP_06510528.1| N utilization substance protein B nusB [Mycobacterium tuberculosis T92] gi|289754643|ref|ZP_06514021.1| transcription antitermination protein NusB [Mycobacterium tuberculosis EAS054] gi|39931755|sp|Q7TYC8|NUSB_MYCBO RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|166215697|sp|A1KLN0|NUSB_MYCBP RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|254772648|sp|C1AF01|NUSB_MYCBT RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|31619309|emb|CAD94747.1| N UTILIZATION SUBSTANCE PROTEIN NUSB (NUSB PROTEIN) [Mycobacterium bovis AF2122/97] gi|121494065|emb|CAL72543.1| N utilization substance protein nusB [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|224774024|dbj|BAH26830.1| transcription antitermination protein [Mycobacterium bovis BCG str. Tokyo 172] gi|289416987|gb|EFD14227.1| transcription antitermination factor NusB [Mycobacterium tuberculosis T46] gi|289421139|gb|EFD18340.1| N utilization substance protein B nusB [Mycobacterium tuberculosis CPHL_A] gi|289539669|gb|EFD44247.1| N utilization substance protein B nusB [Mycobacterium tuberculosis K85] gi|289544453|gb|EFD48101.1| N utilization substance protein B nusB [Mycobacterium tuberculosis T17] gi|289691737|gb|EFD59166.1| N utilization substance protein B nusB [Mycobacterium tuberculosis T92] gi|289695230|gb|EFD62659.1| transcription antitermination protein NusB [Mycobacterium tuberculosis EAS054] Length = 156 Score = 150 bits (379), Expect = 8e-35, Method: Composition-based stats. Identities = 44/145 (30%), Positives = 70/145 (48%), Gaps = 9/145 (6%) Query: 9 DLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEW 68 D K R AR AV L++ ++ G S E++ T A+ + D+ ++ + Sbjct: 3 DRKPVRGRHQARKRAVDLLFEAEVRGISAAEVVD---TRAALAEAKPDIARLH-----PY 54 Query: 69 FRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIIS 128 + GV + HID LI++ L W+ RL + +ILR V EL+ VP V++ Sbjct: 55 TAAVARGVSEHAAHIDDLITAHL-RGWTLDRLPAVDRAILRVSVWELLHAADVPEPVVVD 113 Query: 129 EYVCIAHDFFYGDEPKFINAVLDKV 153 E V +A + D P F+N VL +V Sbjct: 114 EAVQLAKELSTDDSPGFVNGVLGQV 138 >gi|17545430|ref|NP_518832.1| transcription antitermination protein NusB [Ralstonia solanacearum GMI1000] gi|17427722|emb|CAD14241.1| probable n utilization substance b homolog (protein nusb). transcription regulator [Ralstonia solanacearum GMI1000] Length = 161 Score = 150 bits (379), Expect = 8e-35, Method: Composition-based stats. Identities = 35/156 (22%), Positives = 63/156 (40%), Gaps = 15/156 (9%) Query: 1 MTIQDNKKDLKLSHR--RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVE 58 MT ++ K + R AR A+Q LYQ + + + Sbjct: 7 MTQDNSPAKPKAPPKSARRRARELALQGLYQWLLNRNDPGVVEAHLHD-----------A 55 Query: 59 SVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIEC 118 + D F ++HG + + + + L + L + + L G EL+ C Sbjct: 56 QGFNKADRAHFDALLHGAIREEATLTESFTPFLDR--PVAELSPVERAALLVGAYELVHC 113 Query: 119 HSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVS 154 +P +V+I+E V +A F + K++N VLDK++ Sbjct: 114 VDIPYKVVINEAVELAKTFGGVEGYKYVNGVLDKLA 149 >gi|325525004|gb|EGD02919.1| transcription antitermination protein NusB [Burkholderia sp. TJI49] Length = 145 Score = 150 bits (379), Expect = 8e-35, Method: Composition-based stats. Identities = 44/159 (27%), Positives = 67/159 (42%), Gaps = 19/159 (11%) Query: 10 LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF 69 +K S RR +R A Q LYQ + S+ EI D +L Y D Sbjct: 1 MKKSARR-QSRELATQGLYQWLLSNASSGEI-----------DAQLRGALGYDKADKALL 48 Query: 70 RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISE 129 I+HGV+ + ++ L +L + ++L EL P VII+E Sbjct: 49 DAILHGVIREHATLVEALTPSLDR--PIDQLSPVERAVLLIATFELTHHVETPYRVIINE 106 Query: 130 YVCIAHDFFYGDEPKFINAVLDKVSRKE-----EIKRSG 163 V +A F D K++N VLDK++ K + +R+G Sbjct: 107 AVELAKTFGGSDGYKYVNGVLDKLAAKLRPAETQARRNG 145 >gi|161525612|ref|YP_001580624.1| transcription antitermination protein NusB [Burkholderia multivorans ATCC 17616] gi|189349659|ref|YP_001945287.1| transcription antitermination protein NusB [Burkholderia multivorans ATCC 17616] gi|221201158|ref|ZP_03574198.1| transcription antitermination factor NusB [Burkholderia multivorans CGD2M] gi|221206389|ref|ZP_03579402.1| transcription antitermination factor NusB [Burkholderia multivorans CGD2] gi|221213666|ref|ZP_03586640.1| transcription antitermination factor NusB [Burkholderia multivorans CGD1] gi|238687024|sp|A9AF25|NUSB_BURM1 RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|160343041|gb|ABX16127.1| NusB antitermination factor [Burkholderia multivorans ATCC 17616] gi|189333681|dbj|BAG42751.1| N utilization substance protein B [Burkholderia multivorans ATCC 17616] gi|221166455|gb|EED98927.1| transcription antitermination factor NusB [Burkholderia multivorans CGD1] gi|221173698|gb|EEE06132.1| transcription antitermination factor NusB [Burkholderia multivorans CGD2] gi|221179008|gb|EEE11415.1| transcription antitermination factor NusB [Burkholderia multivorans CGD2M] Length = 145 Score = 150 bits (379), Expect = 8e-35, Method: Composition-based stats. Identities = 43/159 (27%), Positives = 67/159 (42%), Gaps = 19/159 (11%) Query: 10 LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF 69 +K S RR +R A Q LYQ + S+ EI D +L Y D Sbjct: 1 MKKSARR-QSRELATQGLYQWLLSNASSGEI-----------DAQLRGALGYDKADKALL 48 Query: 70 RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISE 129 I+HGV+ + ++ L +L + ++L EL P V+I+E Sbjct: 49 DAILHGVIREHATLVDALTPSLDR--PIDQLSPVERAVLLIATFELTHHIETPYRVVINE 106 Query: 130 YVCIAHDFFYGDEPKFINAVLDKVSRKE-----EIKRSG 163 V +A F D K++N VLDK++ K + +R+G Sbjct: 107 AVELAKTFGGSDGYKYVNGVLDKLAAKLRPAETQARRNG 145 >gi|307730712|ref|YP_003907936.1| NusB antitermination factor [Burkholderia sp. CCGE1003] gi|307585247|gb|ADN58645.1| NusB antitermination factor [Burkholderia sp. CCGE1003] Length = 144 Score = 150 bits (379), Expect = 8e-35, Method: Composition-based stats. Identities = 42/147 (28%), Positives = 64/147 (43%), Gaps = 15/147 (10%) Query: 10 LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF 69 +K + RR R A Q LYQ + G EI D +L + D E Sbjct: 1 MKSARRRS--RELATQGLYQWLLSGSPGGEI-----------DAQLRGAQGFDKADHEHL 47 Query: 70 RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISE 129 I+HGV+ + + I+ CL +L + ++L EL +P V+I+E Sbjct: 48 DAILHGVIRDSEALSADIAPCLDR--PIDQLSPVERAVLLVAAFELKNHIDIPYRVVINE 105 Query: 130 YVCIAHDFFYGDEPKFINAVLDKVSRK 156 V +A F D K++N VLDK++ K Sbjct: 106 AVELAKTFGGADGYKYVNGVLDKLAAK 132 >gi|237747092|ref|ZP_04577572.1| transcription termination [Oxalobacter formigenes HOxBLS] gi|229378443|gb|EEO28534.1| transcription termination [Oxalobacter formigenes HOxBLS] Length = 159 Score = 150 bits (379), Expect = 8e-35, Method: Composition-based stats. Identities = 42/171 (24%), Positives = 64/171 (37%), Gaps = 20/171 (11%) Query: 1 MTIQDNKK----DLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELD 56 MT NK K R +R A+Q LY+ + II + Sbjct: 1 MTFMKNKSVHANPSKNRSPRHRSREFALQGLYEWLLNKDDAPVIIE-----------HIR 49 Query: 57 VESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELI 116 + D F ++ G + + + + I + S L + +IL G EL Sbjct: 50 QAHGFDKADTGHFVTLVSGTIHQAETLRSEIVPHIDR--SLDELSPVEHAILLLGAYELK 107 Query: 117 ECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRSGCVSA 167 +P V+I+E V + F D KF+N VLDK++ K R V A Sbjct: 108 NHIEIPYRVVINEAVELTKSFGGIDGHKFVNGVLDKIAAKL---RPAEVEA 155 >gi|170760171|ref|YP_001787214.1| transcription antitermination protein NusB [Clostridium botulinum A3 str. Loch Maree] gi|238688744|sp|B1KT54|NUSB_CLOBM RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|169407160|gb|ACA55571.1| N utilization substance protein B [Clostridium botulinum A3 str. Loch Maree] Length = 141 Score = 150 bits (379), Expect = 8e-35, Method: Composition-based stats. Identities = 44/140 (31%), Positives = 67/140 (47%), Gaps = 2/140 (1%) Query: 15 RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLH-VDLEWFRVII 73 R +R A++ L+Q + G + E + + R D E D ESV L VD+++ + II Sbjct: 2 NRRKSREVAMRLLFQTTLNGENLEEALENLKDVRESEDKEKDYESVDLKDVDIDYVKRII 61 Query: 74 HGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCI 133 G+ K+ ID I L + W RL + SILR EL +P V ++E + + Sbjct: 62 KGIEKNKEEIDGKIKGNL-KNWKIERLSKVDLSILRLCTYELKFEEDIPKRVSVNEAIEL 120 Query: 134 AHDFFYGDEPKFINAVLDKV 153 A + FIN VL K+ Sbjct: 121 AKKYSGEKSATFINGVLGKM 140 >gi|107022034|ref|YP_620361.1| transcription antitermination protein NusB [Burkholderia cenocepacia AU 1054] gi|116688978|ref|YP_834601.1| transcription antitermination protein NusB [Burkholderia cenocepacia HI2424] gi|170732269|ref|YP_001764216.1| transcription antitermination protein NusB [Burkholderia cenocepacia MC0-3] gi|206561400|ref|YP_002232165.1| transcription antitermination protein NusB [Burkholderia cenocepacia J2315] gi|254246083|ref|ZP_04939404.1| Transcription termination factor [Burkholderia cenocepacia PC184] gi|119372281|sp|Q1BYB7|NUSB_BURCA RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|166215666|sp|A0K5D1|NUSB_BURCH RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|238688594|sp|B1JX75|NUSB_BURCC RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|238693104|sp|B4EBT9|NUSB_BURCJ RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|105892223|gb|ABF75388.1| NusB antitermination factor [Burkholderia cenocepacia AU 1054] gi|116647067|gb|ABK07708.1| NusB antitermination factor [Burkholderia cenocepacia HI2424] gi|124870859|gb|EAY62575.1| Transcription termination factor [Burkholderia cenocepacia PC184] gi|169815511|gb|ACA90094.1| NusB antitermination factor [Burkholderia cenocepacia MC0-3] gi|198037442|emb|CAR53377.1| probable N utilization substance protein B [Burkholderia cenocepacia J2315] Length = 145 Score = 150 bits (379), Expect = 8e-35, Method: Composition-based stats. Identities = 44/159 (27%), Positives = 67/159 (42%), Gaps = 19/159 (11%) Query: 10 LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF 69 +K S RR +R A Q LYQ + + EI D +L Y D E Sbjct: 1 MKKSARR-QSRELATQGLYQWLLSNAPSGEI-----------DAQLRGALGYDKADKELL 48 Query: 70 RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISE 129 I+HGV+ + ++ L +L + ++L EL P VII+E Sbjct: 49 EAILHGVIREHATLVEALAPSLDR--PIDQLSPVERAVLLIATFELTHHVETPYRVIINE 106 Query: 130 YVCIAHDFFYGDEPKFINAVLDKVSRKE-----EIKRSG 163 V +A F D K++N VLDK++ K + +R+G Sbjct: 107 AVELAKTFGGSDGYKYVNGVLDKLAAKLRPAETQARRNG 145 >gi|153005587|ref|YP_001379912.1| NusB antitermination factor [Anaeromyxobacter sp. Fw109-5] gi|166215659|sp|A7HDY2|NUSB_ANADF RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|152029160|gb|ABS26928.1| NusB antitermination factor [Anaeromyxobacter sp. Fw109-5] Length = 143 Score = 149 bits (378), Expect = 8e-35, Method: Composition-based stats. Identities = 43/150 (28%), Positives = 70/150 (46%), Gaps = 12/150 (8%) Query: 12 LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71 +S +R AR A+QALYQID+ + +S + + E+ D E F Sbjct: 1 MSLKRTRARERALQALYQIDVAAEGIDDALSRFWKSFEPVEREVME-------DAEGF-- 51 Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131 + GV ++ ID I ++ W R+ + ++LR V EL+ VPV+V I+E + Sbjct: 52 -VRGVAAHRRTIDDTIEG-VSTNWRLDRMAKVDRNVLRLAVYELL-RTDVPVKVAINEAI 108 Query: 132 CIAHDFFYGDEPKFINAVLDKVSRKEEIKR 161 + + F+N VLDKV+ +R Sbjct: 109 ELGKKYGSESSGAFVNGVLDKVAAGLPPER 138 >gi|22095947|sp|Q8Y1H9|NUSB_RALSO RecName: Full=N utilization substance protein B homolog; Short=Protein nusB Length = 155 Score = 149 bits (378), Expect = 8e-35, Method: Composition-based stats. Identities = 35/156 (22%), Positives = 63/156 (40%), Gaps = 15/156 (9%) Query: 1 MTIQDNKKDLKLSHR--RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVE 58 MT ++ K + R AR A+Q LYQ + + + Sbjct: 1 MTQDNSPAKPKAPPKSARRRARELALQGLYQWLLNRNDPGVVEAHLHD-----------A 49 Query: 59 SVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIEC 118 + D F ++HG + + + + L + L + + L G EL+ C Sbjct: 50 QGFNKADRAHFDALLHGAIREEATLTESFTPFLDR--PVAELSPVERAALLVGAYELVHC 107 Query: 119 HSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVS 154 +P +V+I+E V +A F + K++N VLDK++ Sbjct: 108 VDIPYKVVINEAVELAKTFGGVEGYKYVNGVLDKLA 143 >gi|229493670|ref|ZP_04387455.1| transcription antitermination factor NusB [Rhodococcus erythropolis SK121] gi|229319631|gb|EEN85467.1| transcription antitermination factor NusB [Rhodococcus erythropolis SK121] Length = 165 Score = 149 bits (378), Expect = 8e-35, Method: Composition-based stats. Identities = 40/144 (27%), Positives = 62/144 (43%), Gaps = 9/144 (6%) Query: 11 KLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFR 70 K R AR AV L++ + + SE ++L V+ + + Sbjct: 6 KKLGARHKARKRAVDFLFEAEARDLDPVALASER--------SDLSVKDDAVAPVAAYTV 57 Query: 71 VIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEY 130 ++ GV + ID +ISS L + W+ RL + +ILR V EL VP V + E Sbjct: 58 TLVSGVAENLDRIDQVISSHL-QDWTLERLPAVDRAILRIAVWELFHATDVPPVVAVDEA 116 Query: 131 VCIAHDFFYGDEPKFINAVLDKVS 154 V +A D P F+N +L +V Sbjct: 117 VELAKQLSTDDSPGFVNGILGQVV 140 >gi|78222837|ref|YP_384584.1| NusB antitermination factor [Geobacter metallireducens GS-15] gi|119390772|sp|Q39V65|NUSB_GEOMG RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|78194092|gb|ABB31859.1| NusB antitermination factor [Geobacter metallireducens GS-15] Length = 138 Score = 149 bits (378), Expect = 8e-35, Method: Composition-based stats. Identities = 35/139 (25%), Positives = 64/139 (46%), Gaps = 11/139 (7%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 R + R A+Q LY D + ++ + D + ++ G Sbjct: 4 RRLGREIALQLLYSRDYTVGEASSLL----------EMVFDEAEPGTAAGRAFSDELVRG 53 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135 V++ ++ ID I+ ++ W+ SR+ + +ILR + EL+ +P V I+E + +A Sbjct: 54 VLEHRETIDATITEK-SKNWAISRMAKVDLNILRLAIYELLYRGDIPKNVTINEAIEVAK 112 Query: 136 DFFYGDEPKFINAVLDKVS 154 F D P FIN +LD+V+ Sbjct: 113 KFGTEDSPAFINGILDEVA 131 >gi|134294984|ref|YP_001118719.1| transcription antitermination protein NusB [Burkholderia vietnamiensis G4] gi|166215672|sp|A4JC81|NUSB_BURVG RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|134138141|gb|ABO53884.1| NusB antitermination factor [Burkholderia vietnamiensis G4] Length = 145 Score = 149 bits (378), Expect = 8e-35, Method: Composition-based stats. Identities = 43/147 (29%), Positives = 62/147 (42%), Gaps = 14/147 (9%) Query: 10 LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF 69 +K S RR +R A Q LYQ + S+ EI D +L Y D E Sbjct: 1 MKKSARR-QSRELATQGLYQWLLSNASSGEI-----------DAQLRGALGYDKADKELL 48 Query: 70 RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISE 129 I+HGV+ + I+ L +L + ++L EL P VII+E Sbjct: 49 EAILHGVIREHATLVEAITPSLDR--PIDQLSPVERAVLLIATFELTHHVETPYRVIINE 106 Query: 130 YVCIAHDFFYGDEPKFINAVLDKVSRK 156 V + F D K++N VLDK++ K Sbjct: 107 AVELTKTFGGSDGYKYVNGVLDKLAAK 133 >gi|194333302|ref|YP_002015162.1| NusB antitermination factor [Prosthecochloris aestuarii DSM 271] gi|238693314|sp|B4S517|NUSB_PROA2 RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|194311120|gb|ACF45515.1| NusB antitermination factor [Prosthecochloris aestuarii DSM 271] Length = 168 Score = 149 bits (378), Expect = 9e-35, Method: Composition-based stats. Identities = 44/157 (28%), Positives = 74/157 (47%), Gaps = 15/157 (9%) Query: 12 LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71 +HRR I R VQALY +D+ T T D + + +F+ Sbjct: 2 KAHRRHI-REKIVQALYTLDVRDTDTATAGDWLITPEISKDPKA----------IRFFKQ 50 Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131 ++ ++D ++ ID IS T W SR+ +I +ILR + E++ +P +V I+E + Sbjct: 51 LLGAIVDNREEIDQYISKH-TFNWDMSRIAIIDKNILRMAMAEILYFEDIPPKVSINEAI 109 Query: 132 CIAHDF-FYGDEPKFINAVLDKVSRKEEIKRSGCVSA 167 IA F KF+N +LD V ++ +SG ++ Sbjct: 110 EIAKKFNSTDKSSKFVNGILDAVY--NDLNKSGKINK 144 >gi|296136867|ref|YP_003644109.1| NusB antitermination factor [Thiomonas intermedia K12] gi|294341036|emb|CAZ89431.1| putative NusB antitermination factor [Thiomonas sp. 3As] gi|295796989|gb|ADG31779.1| NusB antitermination factor [Thiomonas intermedia K12] Length = 202 Score = 149 bits (378), Expect = 9e-35, Method: Composition-based stats. Identities = 40/173 (23%), Positives = 70/173 (40%), Gaps = 21/173 (12%) Query: 1 MTIQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESV 60 MT K R +R A Q +Y+ + G T I + Sbjct: 1 MTATTAPK-----SARRKSRELAFQGIYEWLLAGSDTGAIEAFLHERY-----------P 44 Query: 61 YLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHS 120 + +D + F+ ++HG + +D LI + + S L + ++L G EL Sbjct: 45 TIKLDDDHFQSLLHGALAEAGPLDALIQPHIDRQ--TSELSPVEHALLLMGAFELQRHLD 102 Query: 121 VPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVS---RKEEIKRSGCVSAITQ 170 VP V+I+E V + + D K++N VLD+++ RK E++ + Q Sbjct: 103 VPYRVVINEAVELGKVYGGTDGYKYVNGVLDRIAAQLRKTEVEAANQSHPQAQ 155 >gi|78485740|ref|YP_391665.1| NusB antitermination factor [Thiomicrospira crunogena XCL-2] gi|119390843|sp|Q31FT2|NUSB_THICR RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|78364026|gb|ABB41991.1| NusB antitermination factor [Thiomicrospira crunogena XCL-2] Length = 161 Score = 149 bits (378), Expect = 9e-35, Method: Composition-based stats. Identities = 41/139 (29%), Positives = 67/139 (48%), Gaps = 13/139 (9%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 R R A+QALYQ + T +II ++ E + D+ F+ I++ Sbjct: 24 RTQTRRVALQALYQWQVNHSETVDIIKQF-----------SEEGRLVDTDVALFQEIVNE 72 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135 V + +D L + L + +R+D + +I+R GV EL +P V+I+E V +A Sbjct: 73 VANHAADLDELYAPFLDR--AVARIDPVEKNIMRMGVFELQNKLEIPYRVVINESVELAK 130 Query: 136 DFFYGDEPKFINAVLDKVS 154 F D K+IN +LDK + Sbjct: 131 RFGAEDSHKYINGILDKAA 149 >gi|254448007|ref|ZP_05061471.1| transcription antitermination factor NusB [gamma proteobacterium HTCC5015] gi|198262433|gb|EDY86714.1| transcription antitermination factor NusB [gamma proteobacterium HTCC5015] Length = 188 Score = 149 bits (378), Expect = 9e-35, Method: Composition-based stats. Identities = 44/161 (27%), Positives = 72/161 (44%), Gaps = 6/161 (3%) Query: 2 TIQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVY 61 + +K L + R R +QALYQ +++++ ++ + D Sbjct: 34 SQGKRRKKLSRTEARRKTRQRILQALYQCYFNPLPSSKLVQQFYDDEVGEEEGND----M 89 Query: 62 LHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSV 121 VD ++F+ + +D+ + +D L + L K RLD + ILR V EL E V Sbjct: 90 FGVDADFFQAALSTCVDKTEQLDELYCAHL--KMPIDRLDPVELCILRLAVFELSERLDV 147 Query: 122 PVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRS 162 P V+I+E V +A + D KFIN V+DK +R Sbjct: 148 PRRVVINEAVELAKSYGAEDGHKFINGVIDKTARDLRPHEQ 188 >gi|239939930|ref|ZP_04691867.1| transcription antitermination protein NusB [Streptomyces roseosporus NRRL 15998] gi|239986415|ref|ZP_04707079.1| transcription antitermination protein NusB [Streptomyces roseosporus NRRL 11379] gi|291443361|ref|ZP_06582751.1| transcription antitermination protein NusB [Streptomyces roseosporus NRRL 15998] gi|291346308|gb|EFE73212.1| transcription antitermination protein NusB [Streptomyces roseosporus NRRL 15998] Length = 143 Score = 149 bits (378), Expect = 9e-35, Method: Composition-based stats. Identities = 40/147 (27%), Positives = 67/147 (45%), Gaps = 12/147 (8%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 R AR A Q L++ D G S +++++ + D + V E+ ++ G Sbjct: 4 RNKARKRAFQILFEADQRGASVQSVLADWVRHSRTDDRQPPVG--------EFTMELVEG 55 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135 ID LI + W R+ ++ +ILR G ELI P V+I E V +A Sbjct: 56 YAQYADRIDDLIVTYAV-DWEIDRMPVVDRNILRLGAYELIWMDETPDAVVIDEAVQLAK 114 Query: 136 DFFYGDEPKFINAVLDKVSRKEEIKRS 162 +F D P F+N +L +R +++K + Sbjct: 115 EFSTDDSPSFVNGLL---ARFKDLKPN 138 >gi|115350870|ref|YP_772709.1| transcription antitermination protein NusB [Burkholderia ambifaria AMMD] gi|170702886|ref|ZP_02893730.1| NusB antitermination factor [Burkholderia ambifaria IOP40-10] gi|171321369|ref|ZP_02910324.1| NusB antitermination factor [Burkholderia ambifaria MEX-5] gi|172059882|ref|YP_001807534.1| transcription antitermination protein NusB [Burkholderia ambifaria MC40-6] gi|122323813|sp|Q0BHJ8|NUSB_BURCM RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|238689186|sp|B1YUJ1|NUSB_BURA4 RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|115280858|gb|ABI86375.1| NusB antitermination factor [Burkholderia ambifaria AMMD] gi|170132203|gb|EDT00687.1| NusB antitermination factor [Burkholderia ambifaria IOP40-10] gi|171093347|gb|EDT38540.1| NusB antitermination factor [Burkholderia ambifaria MEX-5] gi|171992399|gb|ACB63318.1| NusB antitermination factor [Burkholderia ambifaria MC40-6] Length = 145 Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats. Identities = 44/159 (27%), Positives = 67/159 (42%), Gaps = 19/159 (11%) Query: 10 LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF 69 +K S RR +R A Q LYQ + + EI D +L Y D E Sbjct: 1 MKKSARR-QSRELATQGLYQWLLSNAAPGEI-----------DAQLRGALGYDKADKELL 48 Query: 70 RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISE 129 I+HGV+ + ++ L +L + ++L EL P VII+E Sbjct: 49 DAILHGVIREHATLIEALTPSLDR--PVDQLSPVERAVLLIATFELTHHVETPYRVIINE 106 Query: 130 YVCIAHDFFYGDEPKFINAVLDKVSRKE-----EIKRSG 163 V +A F D K++N VLDK++ K + +R+G Sbjct: 107 AVELAKTFGGSDGYKYVNGVLDKLAAKLRPAETQARRNG 145 >gi|226306485|ref|YP_002766445.1| transcription antitermination protein NusB [Rhodococcus erythropolis PR4] gi|259514883|sp|C0ZZC1|NUSB_RHOE4 RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|226185602|dbj|BAH33706.1| transcription antitermination protein NusB [Rhodococcus erythropolis PR4] Length = 165 Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats. Identities = 40/144 (27%), Positives = 62/144 (43%), Gaps = 9/144 (6%) Query: 11 KLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFR 70 K R AR AV L++ + + SE ++L V+ + + Sbjct: 6 KKLGARHKARKRAVDFLFEAEARDLDPVALASER--------SDLSVKDDAVAPVAAYTV 57 Query: 71 VIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEY 130 ++ GV + ID +ISS L + W+ RL + +ILR V EL VP V + E Sbjct: 58 TLVSGVAENLDRIDQVISSHL-QDWTLERLPAVDRAILRIAVWELFHATDVPPVVAVDEA 116 Query: 131 VCIAHDFFYGDEPKFINAVLDKVS 154 V +A D P F+N +L +V Sbjct: 117 VELAKQLSTDDSPGFVNGILGQVV 140 >gi|304413734|ref|ZP_07395178.1| transcription termination factor [Candidatus Regiella insecticola LSR1] gi|304283825|gb|EFL92219.1| transcription termination factor [Candidatus Regiella insecticola LSR1] Length = 182 Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats. Identities = 37/148 (25%), Positives = 67/148 (45%), Gaps = 17/148 (11%) Query: 27 LYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLL 86 LY + +I S + + E VD+ +F ++ GV +D L Sbjct: 17 LYSWQLSKNDIADIQSYFLS-----------EQDMKEVDINYFGQLLSGVAVDTATLDRL 65 Query: 87 ISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFI 146 ++ L+ + L I +ILR V EL + +P +V+I+E + +A F D KF+ Sbjct: 66 MAPYLSRQ--IEDLGQIEKAILRLAVFELSQRDDIPYKVVINEAIELAKIFGAEDSHKFV 123 Query: 147 NAVLDKVS----RKEEIKRSGCVSAITQ 170 N VLDK++ +++++ S + Q Sbjct: 124 NGVLDKIAPIIRKRKQLNTSQVIPTTLQ 151 >gi|256391589|ref|YP_003113153.1| NusB antitermination factor [Catenulispora acidiphila DSM 44928] gi|256357815|gb|ACU71312.1| NusB antitermination factor [Catenulispora acidiphila DSM 44928] Length = 145 Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats. Identities = 36/151 (23%), Positives = 74/151 (49%), Gaps = 7/151 (4%) Query: 12 LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71 ++ R AR A++ L++ D+ G ++++ + E + V + Sbjct: 1 MASPRSKARQRALEILFEADLRGVDPRTVLADTQARIRAQGPEGTIPQV-----QPYAAT 55 Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131 ++ GV++ ID L+ +E W+ R+ + ++LR GV EL+ VP V++ E V Sbjct: 56 LVEGVLEHVDKIDDLLDEH-SEGWALDRMPTVDRNVLRIGVYELLWQSDVPDAVVLDEAV 114 Query: 132 CIAHDFFYGDEPKFINAVLDKVSR-KEEIKR 161 +A + P+F+N +L +++ K+ +KR Sbjct: 115 SLARLMSTDESPQFVNGLLARIAEVKDSLKR 145 >gi|295698399|ref|YP_003603054.1| transcription antitermination factor NusB [Candidatus Riesia pediculicola USDA] gi|291157256|gb|ADD79701.1| transcription antitermination factor NusB [Candidatus Riesia pediculicola USDA] Length = 140 Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats. Identities = 47/153 (30%), Positives = 75/153 (49%), Gaps = 14/153 (9%) Query: 12 LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71 + R AR+ AVQALY I G + I+ ++ ++S + VD+E+F+ Sbjct: 1 MRRIRHKARIMAVQALYSWQISGTKNSLIVVDFLNM---------IQSKKIDVDIEYFKK 51 Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131 I G ++ ID + + +D I +ILR GV EL+ +P +VII+E + Sbjct: 52 IFIGTSNKVSKIDQKLFRHTSRALKL--IDQIEKAILRLGVFELLYIK-IPYKVIINEAI 108 Query: 132 CIAHDFFYGDEPKFINAVLDKVSRKEEIKRSGC 164 ++ F KF+N VLDK+ K+ K SG Sbjct: 109 ELSKKFGSERSYKFVNGVLDKIVFKK--KESGS 139 >gi|15615348|ref|NP_243651.1| transcription antitermination protein NusB [Bacillus halodurans C-125] gi|20139208|sp|Q9K965|NUSB_BACHD RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|10175406|dbj|BAB06504.1| transcriptional terminator [Bacillus halodurans C-125] Length = 134 Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats. Identities = 38/138 (27%), Positives = 62/138 (44%), Gaps = 15/138 (10%) Query: 15 RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74 R ++RL AVQALYQ+D+I S + I A + ++ Sbjct: 2 NRRLSRLRAVQALYQMDVIDTSMEKAIESVLDEGEEA--------------SSFMSDLVS 47 Query: 75 GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134 G + ++ +D L + L + W+ R+ + +ILR + EL +P V +E + +A Sbjct: 48 GTVTHQEELDRLYADHL-QGWTVDRIGNVDRAILRMALYELYYVDDIPKNVSFNEAIELA 106 Query: 135 HDFFYGDEPKFINAVLDK 152 F D +FIN VL K Sbjct: 107 KAFGGEDAGRFINGVLSK 124 >gi|39996792|ref|NP_952743.1| N utilization substance protein B [Geobacter sulfurreducens PCA] gi|81702305|sp|Q74CI1|NUSB_GEOSL RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|39983680|gb|AAR35070.1| N utilization substance protein B [Geobacter sulfurreducens PCA] gi|298505803|gb|ADI84526.1| transcription termination factor NusB [Geobacter sulfurreducens KN400] Length = 138 Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats. Identities = 37/139 (26%), Positives = 63/139 (45%), Gaps = 11/139 (7%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 R + R A+Q LY D ++ + LD + ++ G Sbjct: 4 RRLGRELALQMLYSRDYAAGEAAPLL----------ELVLDESEPGAAAGRSFADDLVRG 53 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135 V++ +Q ID I+ ++ WS R+ + SILR + EL+ +P V I+E + +A Sbjct: 54 VLEHRQEIDTAITGA-SKNWSIGRMARVDLSILRMAMYELLFRSDIPKNVTINEAIEVAK 112 Query: 136 DFFYGDEPKFINAVLDKVS 154 F D P FIN +LD+++ Sbjct: 113 KFGTEDSPAFINGILDEIA 131 >gi|307718673|ref|YP_003874205.1| N-utilization substance protein B [Spirochaeta thermophila DSM 6192] gi|306532398|gb|ADN01932.1| N-utilization substance protein B [Spirochaeta thermophila DSM 6192] gi|315185797|gb|EFU19563.1| NusB antitermination factor [Spirochaeta thermophila DSM 6578] Length = 136 Score = 149 bits (377), Expect = 1e-34, Method: Composition-based stats. Identities = 44/140 (31%), Positives = 64/140 (45%), Gaps = 12/140 (8%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 R AR+ A QAL+ D G E+ S AD E+ E + ++++ G Sbjct: 4 RRKARILAFQALFASDGGGGDGLEVFS-----FPWADGEIPEEV------RTFAQLLLRG 52 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135 ++ +D LI L E W F R+ +ILR V L+ +P VII E V IA Sbjct: 53 TLEHLPEVDDLIKKHL-EHWDFGRIARTDRAILRMSVYALLYQKEIPARVIIDEAVEIAK 111 Query: 136 DFFYGDEPKFINAVLDKVSR 155 F D +F+N VLD + + Sbjct: 112 QFGTQDSYRFVNGVLDAIRK 131 >gi|290961848|ref|YP_003493030.1| NusB family protein [Streptomyces scabiei 87.22] gi|260651374|emb|CBG74496.1| putative NusB-family protein [Streptomyces scabiei 87.22] Length = 144 Score = 149 bits (377), Expect = 1e-34, Method: Composition-based stats. Identities = 35/138 (25%), Positives = 65/138 (47%), Gaps = 9/138 (6%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 R AR A Q L++ D G +++++ + + V E+ ++ G Sbjct: 4 RNTARKRAFQILFEGDQRGADVLTVLADWIRHAHNDTRQPPVS--------EYTMQLVEG 55 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135 + + ID LI+ + W+ R+ ++ +ILR G ELI + P V++ E V +A Sbjct: 56 YSEHARRIDELIAQY-SVGWTLDRMPVVDRNILRLGAYELIWVDATPDAVVLDEMVQLAK 114 Query: 136 DFFYGDEPKFINAVLDKV 153 +F D P F+N +L ++ Sbjct: 115 EFSTDDSPSFVNGLLGRL 132 >gi|30022264|ref|NP_833895.1| transcription antitermination protein NusB [Bacillus cereus ATCC 14579] gi|206971091|ref|ZP_03232042.1| N utilization substance protein B [Bacillus cereus AH1134] gi|218233314|ref|YP_002368985.1| transcription antitermination protein NusB [Bacillus cereus B4264] gi|218899346|ref|YP_002447757.1| N utilization substance protein B [Bacillus cereus G9842] gi|228902700|ref|ZP_04066847.1| N utilization substance protein B [Bacillus thuringiensis IBL 4222] gi|228910018|ref|ZP_04073838.1| N utilization substance protein B [Bacillus thuringiensis IBL 200] gi|228922937|ref|ZP_04086231.1| N utilization substance protein B [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228967223|ref|ZP_04128259.1| N utilization substance protein B [Bacillus thuringiensis serovar sotto str. T04001] gi|228974275|ref|ZP_04134844.1| N utilization substance protein B [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|296504671|ref|YP_003666371.1| transcription antitermination protein NusB [Bacillus thuringiensis BMB171] gi|39931865|sp|Q818R4|NUSB_BACCR RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|226737439|sp|B7IXH3|NUSB_BACC2 RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|226737885|sp|B7HB53|NUSB_BACC4 RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|29897821|gb|AAP11096.1| N utilization substance protein B [Bacillus cereus ATCC 14579] gi|206733863|gb|EDZ51034.1| N utilization substance protein B [Bacillus cereus AH1134] gi|218161271|gb|ACK61263.1| N utilization substance protein B [Bacillus cereus B4264] gi|218545985|gb|ACK98379.1| N utilization substance protein B [Bacillus cereus G9842] gi|228785325|gb|EEM33335.1| N utilization substance protein B [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228792592|gb|EEM40158.1| N utilization substance protein B [Bacillus thuringiensis serovar sotto str. T04001] gi|228836708|gb|EEM82055.1| N utilization substance protein B [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228849535|gb|EEM94369.1| N utilization substance protein B [Bacillus thuringiensis IBL 200] gi|228856887|gb|EEN01400.1| N utilization substance protein B [Bacillus thuringiensis IBL 4222] gi|296325723|gb|ADH08651.1| transcription antitermination protein NusB [Bacillus thuringiensis BMB171] gi|326941963|gb|AEA17859.1| transcription antitermination protein [Bacillus thuringiensis serovar chinensis CT-43] Length = 130 Score = 149 bits (377), Expect = 1e-34, Method: Composition-based stats. Identities = 41/139 (29%), Positives = 63/139 (45%), Gaps = 14/139 (10%) Query: 15 RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74 +R AR A+QALYQ+DI G ++ E E + ++ Sbjct: 2 KRRTARERAMQALYQMDITGELEPKVAVENTLDEGEETNE-------------FLESLVV 48 Query: 75 GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134 G ++ K+ ID I L +KW R+ ++ SILR V E+ +P V I+E + IA Sbjct: 49 GFVENKEAIDEAIRQNL-KKWKLERISIVDRSILRVAVYEMKYMEEIPHNVTINEAIEIA 107 Query: 135 HDFFYGDEPKFINAVLDKV 153 F + +FIN VL + Sbjct: 108 KTFGDEESRRFINGVLSNI 126 >gi|312883802|ref|ZP_07743521.1| transcription antitermination protein NusB [Vibrio caribbenthicus ATCC BAA-2122] gi|309368551|gb|EFP96084.1| transcription antitermination protein NusB [Vibrio caribbenthicus ATCC BAA-2122] Length = 155 Score = 149 bits (377), Expect = 1e-34, Method: Composition-based stats. Identities = 34/140 (24%), Positives = 61/140 (43%), Gaps = 5/140 (3%) Query: 24 VQALYQIDIIGCSTTEIISEYETYRFCADTE---LDVESVYLHVDLEWFRVIIHGVMDRK 80 +QA+Y I + I ++ + + E + D+ +FR ++ GV+ Sbjct: 18 LQAIYSWQITKENVANIEEQFLSGDKYDEEEHHAQEPALSTPDTDVAYFRDLLTGVVLSH 77 Query: 81 QHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYG 140 +D I LDM+ ++LR + E+ VP +V+I+E + +A F Sbjct: 78 TELDSKIRPYTAR--PMQDLDMMELALLRLAMYEMTRREDVPYKVVINEAIELAKVFAAE 135 Query: 141 DEPKFINAVLDKVSRKEEIK 160 + KF+N VLDK + K Sbjct: 136 ESHKFVNGVLDKAAPHVRKK 155 >gi|300022490|ref|YP_003755101.1| NusB antitermination factor [Hyphomicrobium denitrificans ATCC 51888] gi|299524311|gb|ADJ22780.1| NusB antitermination factor [Hyphomicrobium denitrificans ATCC 51888] Length = 170 Score = 149 bits (377), Expect = 1e-34, Method: Composition-based stats. Identities = 52/133 (39%), Positives = 79/133 (59%), Gaps = 3/133 (2%) Query: 24 VQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHI 83 VQALYQ+D+ G ++I+E+ R D + + + D +F I+ V+ R++ I Sbjct: 23 VQALYQMDMAGTDLNDVIAEFLNERLSGD---NRDEMLAGADRVFFADILRAVVRRQREI 79 Query: 84 DLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEP 143 D +I L W R+D IL +ILR GV EL++ + VP V ISEYV +A FF +EP Sbjct: 80 DPMIDEQLAVGWRLVRVDSILRAILRGGVAELVDRYDVPARVAISEYVNVARVFFDEEEP 139 Query: 144 KFINAVLDKVSRK 156 + +N VLDK++R+ Sbjct: 140 RVVNGVLDKLARR 152 >gi|261253734|ref|ZP_05946307.1| transcription termination protein NusB [Vibrio orientalis CIP 102891] gi|260937125|gb|EEX93114.1| transcription termination protein NusB [Vibrio orientalis CIP 102891] Length = 155 Score = 149 bits (377), Expect = 1e-34, Method: Composition-based stats. Identities = 34/140 (24%), Positives = 61/140 (43%), Gaps = 5/140 (3%) Query: 24 VQALYQIDIIGCSTTEIISEYETYRFCADTEL---DVESVYLHVDLEWFRVIIHGVMDRK 80 +QA+Y I + I ++ + + E + D+ +FR ++ GV+ Sbjct: 18 LQAIYSWQITKENVATIEEQFLSGGKYDEEEHHASEPALSAPDTDVAYFRDLLTGVVLSH 77 Query: 81 QHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYG 140 +D I LDM+ ++LR + E+ VP +V+I+E + +A F Sbjct: 78 TELDSKIRPYTAR--PMQDLDMMELALLRLAMYEMTRREDVPYKVVINEAIELAKVFAAE 135 Query: 141 DEPKFINAVLDKVSRKEEIK 160 + KF+N VLDK + K Sbjct: 136 ESHKFVNGVLDKAAPHVRKK 155 >gi|114771638|ref|ZP_01449042.1| transcription antitermination factor NusB [alpha proteobacterium HTCC2255] gi|114547710|gb|EAU50600.1| transcription antitermination factor NusB [alpha proteobacterium HTCC2255] Length = 151 Score = 149 bits (377), Expect = 1e-34, Method: Composition-based stats. Identities = 48/162 (29%), Positives = 83/162 (51%), Gaps = 13/162 (8%) Query: 1 MTIQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESV 60 MT +KK +K +RL AVQAL+Q++ E+ ++ +RF A E + Sbjct: 1 MT---SKKQMK-----SASRLYAVQALFQMEASEQGMNEVRDQFVNHRFGATLEGEE--- 49 Query: 61 YLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHS 120 Y+ ++E F ++ ++++ ID + L KW R+D L ++ R E I Sbjct: 50 YVEGNVELFEQLLFTAVNQQAAIDQMTDRALVAKWPIDRIDPTLRALFRTAGAEFI-IDD 108 Query: 121 VPVEVIISEYVCIAHDFF-YGDEPKFINAVLDKVSRKEEIKR 161 P +V I E+V +A FF G+E +F+NA+LD ++R+ + Sbjct: 109 TPPKVAIVEFVDVAKAFFPDGNETRFVNAILDHMAREVHPDK 150 >gi|21241522|ref|NP_641104.1| transcription antitermination protein NusB [Xanthomonas axonopodis pv. citri str. 306] gi|24638072|sp|Q8PPD5|NUSB_XANAC RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|21106870|gb|AAM35640.1| transcription termination factor NusB [Xanthomonas axonopodis pv. citri str. 306] Length = 159 Score = 149 bits (377), Expect = 1e-34, Method: Composition-based stats. Identities = 37/143 (25%), Positives = 63/143 (44%), Gaps = 16/143 (11%) Query: 25 QALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHID 84 QA+Y I G ++I+++ E + DL +F ++ GV+ + +D Sbjct: 30 QAVYAWQISGGFAKQVIAQFAH-----------EQAHEVADLAYFENLVEGVLSNRAELD 78 Query: 85 LLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPK 144 ++ L S +D I ++LR EL+ VP V+I+E + A F Sbjct: 79 TALTPYLDR--SVEEVDAIERAVLRLAAYELLYRQDVPYRVVINEAIETAKRFGSEHGHT 136 Query: 145 FINAVLDKVS---RKEEIKRSGC 164 ++N VLD+ + RK E SG Sbjct: 137 YVNGVLDRAAVEWRKVESGASGA 159 >gi|302879544|ref|YP_003848108.1| NusB antitermination factor [Gallionella capsiferriformans ES-2] gi|302582333|gb|ADL56344.1| NusB antitermination factor [Gallionella capsiferriformans ES-2] Length = 157 Score = 149 bits (377), Expect = 1e-34, Method: Composition-based stats. Identities = 39/144 (27%), Positives = 64/144 (44%), Gaps = 13/144 (9%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 R AR A+Q +YQ + G TEI + L E D + ++ G Sbjct: 19 RHRARELALQGVYQWRVSGSDATEIEA-----------HLQGEKNLGRYDKPMYSKLLRG 67 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135 V+ ++ + +L++ L + L + S+L EL VP +V+I+E V +A Sbjct: 68 VLANQEELQILLTPYLDR--ALDELSTVEFSVLLLAGFELAHQLDVPYKVVINEAVELAK 125 Query: 136 DFFYGDEPKFINAVLDKVSRKEEI 159 F D K++N VLDK++ K Sbjct: 126 TFGGTDGHKYVNGVLDKLAPKVRA 149 >gi|163941940|ref|YP_001646824.1| transcription antitermination protein NusB [Bacillus weihenstephanensis KBAB4] gi|229013400|ref|ZP_04170537.1| N utilization substance protein B [Bacillus mycoides DSM 2048] gi|229061872|ref|ZP_04199202.1| N utilization substance protein B [Bacillus cereus AH603] gi|229620056|sp|A9VGW4|NUSB_BACWK RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|163864137|gb|ABY45196.1| NusB antitermination factor [Bacillus weihenstephanensis KBAB4] gi|228717433|gb|EEL69101.1| N utilization substance protein B [Bacillus cereus AH603] gi|228747812|gb|EEL97678.1| N utilization substance protein B [Bacillus mycoides DSM 2048] Length = 130 Score = 149 bits (377), Expect = 1e-34, Method: Composition-based stats. Identities = 42/139 (30%), Positives = 63/139 (45%), Gaps = 14/139 (10%) Query: 15 RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74 +R AR A+QALYQ+DI G ++ E E + ++ Sbjct: 2 KRRTARERAMQALYQMDITGELEPKVAVENTLDEGEETNE-------------FLESLVV 48 Query: 75 GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134 G +D K+ ID I L +KW R+ ++ SILR V E+ +P V I+E + IA Sbjct: 49 GFVDNKEEIDAAIRQNL-KKWKLERISIVDRSILRVAVCEMKYMEEIPHNVTINEAIEIA 107 Query: 135 HDFFYGDEPKFINAVLDKV 153 F + +FIN VL + Sbjct: 108 KTFGDEESRRFINGVLSNI 126 >gi|21230173|ref|NP_636090.1| transcription antitermination protein NusB [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66769837|ref|YP_244599.1| transcription antitermination protein NusB [Xanthomonas campestris pv. campestris str. 8004] gi|188993052|ref|YP_001905062.1| transcription antitermination protein NusB [Xanthomonas campestris pv. campestris str. B100] gi|24638071|sp|Q8PCM6|NUSB_XANCP RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|81304209|sp|Q4UQU4|NUSB_XANC8 RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|229620372|sp|B0RVD1|NUSB_XANCB RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|21111708|gb|AAM40014.1| transcription termination factor NusB [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66575169|gb|AAY50579.1| transcription termination factor NusB [Xanthomonas campestris pv. campestris str. 8004] gi|167734812|emb|CAP53022.1| antitermination factor, NusB family [Xanthomonas campestris pv. campestris] Length = 159 Score = 149 bits (377), Expect = 1e-34, Method: Composition-based stats. Identities = 36/143 (25%), Positives = 62/143 (43%), Gaps = 16/143 (11%) Query: 25 QALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHID 84 QA+Y I G ++I+++ E + DL +F ++ GV+ + +D Sbjct: 30 QAVYAWQIAGGFAKQVIAQFAH-----------EQAHEVADLAYFESLVEGVLSNRSELD 78 Query: 85 LLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPK 144 ++ L +D I ++LR EL+ VP V+I+E + A F Sbjct: 79 TALTPYLDRG--VEEVDAIERAVLRLAAYELLYRQDVPYRVVINEAIETAKRFGSEHGHT 136 Query: 145 FINAVLDKVS---RKEEIKRSGC 164 ++N VLD+ + RK E SG Sbjct: 137 YVNGVLDRAAVEWRKMESGASGA 159 >gi|311030979|ref|ZP_07709069.1| transcription antitermination protein NusB [Bacillus sp. m3-13] Length = 133 Score = 149 bits (377), Expect = 1e-34, Method: Composition-based stats. Identities = 41/139 (29%), Positives = 66/139 (47%), Gaps = 15/139 (10%) Query: 15 RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74 +R +R A+QA++Q+D+ + E I+ D ++ I+ Sbjct: 2 KRSESRKKALQAIFQMDLSDIAPDEAITNVLEEGERPD--------------DFLSSIVF 47 Query: 75 GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134 G + ++ ID + S L EKWS RL + +ILR V E++ +PV V ++E + +A Sbjct: 48 GTKEHQEEIDSTLKSHL-EKWSLDRLGTVDRTILRMTVFEMMFVEEIPVNVSMNEAIELA 106 Query: 135 HDFFYGDEPKFINAVLDKV 153 F FINAVL KV Sbjct: 107 KTFGDDKSSGFINAVLSKV 125 >gi|260775291|ref|ZP_05884188.1| transcription termination protein NusB [Vibrio coralliilyticus ATCC BAA-450] gi|260608472|gb|EEX34637.1| transcription termination protein NusB [Vibrio coralliilyticus ATCC BAA-450] Length = 155 Score = 149 bits (377), Expect = 1e-34, Method: Composition-based stats. Identities = 35/140 (25%), Positives = 62/140 (44%), Gaps = 5/140 (3%) Query: 24 VQALYQIDIIGCSTTEIISEYETYRFCADTE---LDVESVYLHVDLEWFRVIIHGVMDRK 80 +QA+Y I + I ++ + + E + V D+ +FR ++ GV+ Sbjct: 18 LQAIYSWQITKENVATIEEQFLSGGKYDEEEHHAAEPALVAPDTDVAYFRDLLTGVVLSH 77 Query: 81 QHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYG 140 +D I LDM+ ++LR + E+ VP +V+I+E + +A F Sbjct: 78 TELDSKIRPYTAR--PMQDLDMMELALLRLAMYEMTRREDVPYKVVINEAIELAKVFAAE 135 Query: 141 DEPKFINAVLDKVSRKEEIK 160 + KF+N VLDK + K Sbjct: 136 ESHKFVNGVLDKAAPHVRKK 155 >gi|297569245|ref|YP_003690589.1| NusB antitermination factor [Desulfurivibrio alkaliphilus AHT2] gi|296925160|gb|ADH85970.1| NusB antitermination factor [Desulfurivibrio alkaliphilus AHT2] Length = 138 Score = 149 bits (377), Expect = 1e-34, Method: Composition-based stats. Identities = 41/140 (29%), Positives = 64/140 (45%), Gaps = 12/140 (8%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 R +R A+QALYQ D+ S + + C + E+ ++ L + ++ G Sbjct: 4 RRKSRELALQALYQADMSNVSALDTLP-----VLCENFEVSRKA------LPYGEGLVGG 52 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135 V+ ID +I + W SR+ I +I+R V E VP V I+E + +A Sbjct: 53 VVANLAAIDRII-EAGSAHWRVSRMSCIDRNIIRIAVYEFNFAADVPAGVAINEAIELAK 111 Query: 136 DFFYGDEPKFINAVLDKVSR 155 F D P FIN VLD + + Sbjct: 112 RFGSEDSPAFINGVLDAIRK 131 >gi|222055768|ref|YP_002538130.1| NusB antitermination factor [Geobacter sp. FRC-32] gi|254772641|sp|B9M1E7|NUSB_GEOSF RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|221565057|gb|ACM21029.1| NusB antitermination factor [Geobacter sp. FRC-32] Length = 145 Score = 149 bits (377), Expect = 1e-34, Method: Composition-based stats. Identities = 39/142 (27%), Positives = 66/142 (46%), Gaps = 6/142 (4%) Query: 14 HRRGIARLAAVQALYQIDIIGCSTTEIISE-YETYRFCADTELDVESVYLHVDLEWFRVI 72 R R A+QALY D T + + + + ++ LDV + + Sbjct: 2 SSRREGRELALQALYSSDAESLGGTFALKKIMDNFADGSEPSLDVHGRSF----TFATEL 57 Query: 73 IHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVC 132 ++GV+ + ID I ++ WS +R+ + +ILR V EL +P V I+E + Sbjct: 58 VNGVLSNSEAIDRKIEEK-SKNWSIARMAKVDLNILRLAVFELFYRPDIPKNVTINEAIE 116 Query: 133 IAHDFFYGDEPKFINAVLDKVS 154 +A F D P FIN +LD+++ Sbjct: 117 VAKKFGAEDSPAFINGILDEIA 138 >gi|326317709|ref|YP_004235381.1| NusB antitermination factor [Acidovorax avenae subsp. avenae ATCC 19860] gi|323374545|gb|ADX46814.1| NusB antitermination factor [Acidovorax avenae subsp. avenae ATCC 19860] Length = 186 Score = 149 bits (377), Expect = 1e-34, Method: Composition-based stats. Identities = 42/171 (24%), Positives = 72/171 (42%), Gaps = 17/171 (9%) Query: 2 TIQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVY 61 T +K S R +R A+QALYQ I+G + I + S + Sbjct: 26 TSTGARKAASKSA-RSRSRAFALQALYQ-HIVGRNEATAIDVF----------TRDLSGF 73 Query: 62 LHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSV 121 D + ++HG ++ + +D LI+ L + + I + + GV E C V Sbjct: 74 HKADAAHYDALLHGCIENAETLDALITPKLDR--TLEEISPIEHATMWIGVYEFQHCLDV 131 Query: 122 PVEVIISEYVCIAHDFFYGDEPKFINAVLDKVS---RKEEIKRSGCVSAIT 169 P V+I+E V +A +F D K++N VL+ ++ R E+ + Sbjct: 132 PWRVVINECVELAKEFGGTDGHKYVNGVLNGLAPTLRAAEVAADRTPGSAA 182 >gi|221633595|ref|YP_002522821.1| transcription antitermination factor NusB [Thermomicrobium roseum DSM 5159] gi|221156287|gb|ACM05414.1| transcription antitermination factor NusB [Thermomicrobium roseum DSM 5159] Length = 168 Score = 149 bits (376), Expect = 1e-34, Method: Composition-based stats. Identities = 34/146 (23%), Positives = 68/146 (46%), Gaps = 12/146 (8%) Query: 9 DLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEW 68 D+ L+ R AR+ A+Q LY++D+ S E++ + + ++ + Sbjct: 27 DMSLARIRRQARILALQILYEVDVANHSLEEVLERHRS-----------QASIAQPVRRY 75 Query: 69 FRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIIS 128 ++ GV ++ ID +I+ + +L + +ILR + EL+ VP++ I+ Sbjct: 76 AERLVTGVWADRERIDRMIAEA-APAFPVDQLPPVDRNILRIAIYELLHEPDVPLKAAIN 134 Query: 129 EYVCIAHDFFYGDEPKFINAVLDKVS 154 E V IA + +F+N VL ++ Sbjct: 135 EAVEIAKQYGGESSSRFVNGVLGTIA 160 >gi|30264257|ref|NP_846634.1| transcription antitermination protein NusB [Bacillus anthracis str. Ames] gi|47529700|ref|YP_021049.1| transcription antitermination protein NusB [Bacillus anthracis str. 'Ames Ancestor'] gi|47569441|ref|ZP_00240122.1| transcription antitermination factor nusB [Bacillus cereus G9241] gi|49187084|ref|YP_030336.1| transcription antitermination protein NusB [Bacillus anthracis str. Sterne] gi|49478572|ref|YP_038243.1| transcription antitermination protein NusB [Bacillus thuringiensis serovar konkukian str. 97-27] gi|52141314|ref|YP_085515.1| transcription antitermination protein NusB [Bacillus cereus E33L] gi|65321567|ref|ZP_00394526.1| COG0781: Transcription termination factor [Bacillus anthracis str. A2012] gi|118479373|ref|YP_896524.1| transcription antitermination protein NusB [Bacillus thuringiensis str. Al Hakam] gi|165873007|ref|ZP_02217629.1| N utilization substance protein B [Bacillus anthracis str. A0488] gi|167634649|ref|ZP_02392969.1| N utilization substance protein B [Bacillus anthracis str. A0442] gi|167638629|ref|ZP_02396905.1| N utilization substance protein B [Bacillus anthracis str. A0193] gi|170687525|ref|ZP_02878742.1| N utilization substance protein B [Bacillus anthracis str. A0465] gi|170709044|ref|ZP_02899474.1| N utilization substance protein B [Bacillus anthracis str. A0389] gi|177654829|ref|ZP_02936586.1| N utilization substance protein B [Bacillus anthracis str. A0174] gi|190565849|ref|ZP_03018768.1| N utilization substance protein B [Bacillus anthracis Tsiankovskii-I] gi|196034887|ref|ZP_03102294.1| N utilization substance protein B [Bacillus cereus W] gi|196041593|ref|ZP_03108885.1| N utilization substance protein B [Bacillus cereus NVH0597-99] gi|196046394|ref|ZP_03113620.1| N utilization substance protein B [Bacillus cereus 03BB108] gi|206976312|ref|ZP_03237220.1| N utilization substance protein B [Bacillus cereus H3081.97] gi|217961672|ref|YP_002340242.1| transcription antitermination protein NusB [Bacillus cereus AH187] gi|218905318|ref|YP_002453152.1| N utilization substance protein B [Bacillus cereus AH820] gi|222097628|ref|YP_002531685.1| transcription antitermination protein nusb [Bacillus cereus Q1] gi|225866164|ref|YP_002751542.1| N utilization substance protein B [Bacillus cereus 03BB102] gi|227816958|ref|YP_002816967.1| N utilization substance protein B [Bacillus anthracis str. CDC 684] gi|228916818|ref|ZP_04080383.1| N utilization substance protein B [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228929228|ref|ZP_04092255.1| N utilization substance protein B [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228935505|ref|ZP_04098323.1| N utilization substance protein B [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228947899|ref|ZP_04110186.1| N utilization substance protein B [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|229031831|ref|ZP_04187819.1| N utilization substance protein B [Bacillus cereus AH1271] gi|229123702|ref|ZP_04252897.1| N utilization substance protein B [Bacillus cereus 95/8201] gi|229604290|ref|YP_002868476.1| N utilization substance protein B [Bacillus anthracis str. A0248] gi|254683946|ref|ZP_05147806.1| transcription antitermination protein NusB [Bacillus anthracis str. CNEVA-9066] gi|254721781|ref|ZP_05183570.1| transcription antitermination protein NusB [Bacillus anthracis str. A1055] gi|254736294|ref|ZP_05194000.1| transcription antitermination protein NusB [Bacillus anthracis str. Western North America USA6153] gi|254741332|ref|ZP_05199019.1| transcription antitermination protein NusB [Bacillus anthracis str. Kruger B] gi|254754034|ref|ZP_05206069.1| transcription antitermination protein NusB [Bacillus anthracis str. Vollum] gi|254757905|ref|ZP_05209932.1| transcription antitermination protein NusB [Bacillus anthracis str. Australia 94] gi|301055675|ref|YP_003793886.1| transcription antitermination protein NusB [Bacillus anthracis CI] gi|39931872|sp|Q81M49|NUSB_BACAN RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|81613591|sp|Q6HDY3|NUSB_BACHK RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|81686283|sp|Q635A2|NUSB_BACCZ RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|166215664|sp|A0RIH4|NUSB_BACAH RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|226737438|sp|B7JM33|NUSB_BACC0 RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|226738895|sp|B7HNU5|NUSB_BACC7 RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|254772611|sp|C3P7W1|NUSB_BACAA RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|254772612|sp|C3LJV6|NUSB_BACAC RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|254772613|sp|C1ERQ5|NUSB_BACC3 RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|254772614|sp|B9IXH5|NUSB_BACCQ RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|30258902|gb|AAP28120.1| N utilization substance protein B [Bacillus anthracis str. Ames] gi|47504848|gb|AAT33524.1| N utilization substance protein B [Bacillus anthracis str. 'Ames Ancestor'] gi|47553856|gb|EAL12226.1| transcription antitermination factor nusB [Bacillus cereus G9241] gi|49181011|gb|AAT56387.1| N utilization substance protein B [Bacillus anthracis str. Sterne] gi|49330128|gb|AAT60774.1| N utilization substance protein B [Bacillus thuringiensis serovar konkukian str. 97-27] gi|51974783|gb|AAU16333.1| N utilization substance protein B [Bacillus cereus E33L] gi|118418598|gb|ABK87017.1| N utilization substance protein B [Bacillus thuringiensis str. Al Hakam] gi|164711290|gb|EDR16845.1| N utilization substance protein B [Bacillus anthracis str. A0488] gi|167513477|gb|EDR88847.1| N utilization substance protein B [Bacillus anthracis str. A0193] gi|167530101|gb|EDR92836.1| N utilization substance protein B [Bacillus anthracis str. A0442] gi|170126071|gb|EDS94968.1| N utilization substance protein B [Bacillus anthracis str. A0389] gi|170668720|gb|EDT19466.1| N utilization substance protein B [Bacillus anthracis str. A0465] gi|172080490|gb|EDT65576.1| N utilization substance protein B [Bacillus anthracis str. A0174] gi|190562768|gb|EDV16734.1| N utilization substance protein B [Bacillus anthracis Tsiankovskii-I] gi|195992426|gb|EDX56387.1| N utilization substance protein B [Bacillus cereus W] gi|196022864|gb|EDX61545.1| N utilization substance protein B [Bacillus cereus 03BB108] gi|196027581|gb|EDX66196.1| N utilization substance protein B [Bacillus cereus NVH0597-99] gi|206745508|gb|EDZ56907.1| N utilization substance protein B [Bacillus cereus H3081.97] gi|217067907|gb|ACJ82157.1| N utilization substance protein B [Bacillus cereus AH187] gi|218539371|gb|ACK91769.1| N utilization substance protein B [Bacillus cereus AH820] gi|221241686|gb|ACM14396.1| N utilization substance protein B [Bacillus cereus Q1] gi|225785990|gb|ACO26207.1| N utilization substance protein B [Bacillus cereus 03BB102] gi|227003150|gb|ACP12893.1| N utilization substance protein B [Bacillus anthracis str. CDC 684] gi|228659837|gb|EEL15482.1| N utilization substance protein B [Bacillus cereus 95/8201] gi|228729449|gb|EEL80438.1| N utilization substance protein B [Bacillus cereus AH1271] gi|228811886|gb|EEM58220.1| N utilization substance protein B [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228824257|gb|EEM70071.1| N utilization substance protein B [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228830518|gb|EEM76128.1| N utilization substance protein B [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228843005|gb|EEM88088.1| N utilization substance protein B [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|229268698|gb|ACQ50335.1| N utilization substance protein B [Bacillus anthracis str. A0248] gi|300377844|gb|ADK06748.1| transcription antitermination protein NusB [Bacillus cereus biovar anthracis str. CI] gi|324328096|gb|ADY23356.1| transcription antitermination protein NusB [Bacillus thuringiensis serovar finitimus YBT-020] Length = 130 Score = 149 bits (376), Expect = 1e-34, Method: Composition-based stats. Identities = 41/139 (29%), Positives = 63/139 (45%), Gaps = 14/139 (10%) Query: 15 RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74 +R AR A+QALYQ+DI G ++ E E + ++ Sbjct: 2 KRRTARERAMQALYQMDITGELEPKVAVENTLDEGEETNE-------------FLESLVV 48 Query: 75 GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134 G ++ K+ ID I L +KW R+ ++ SILR V E+ +P V I+E + IA Sbjct: 49 GFVENKEVIDEAIRQNL-KKWKLERISIVDRSILRVAVYEMKYMEEIPHNVTINEAIEIA 107 Query: 135 HDFFYGDEPKFINAVLDKV 153 F + +FIN VL + Sbjct: 108 KTFGDEESRRFINGVLSNI 126 >gi|229093241|ref|ZP_04224359.1| N utilization substance protein B [Bacillus cereus Rock3-42] gi|228690215|gb|EEL44009.1| N utilization substance protein B [Bacillus cereus Rock3-42] Length = 130 Score = 149 bits (376), Expect = 1e-34, Method: Composition-based stats. Identities = 41/139 (29%), Positives = 63/139 (45%), Gaps = 14/139 (10%) Query: 15 RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74 +R AR A+QALYQ+DI G ++ E E + ++ Sbjct: 2 KRRTARERAMQALYQMDITGELEPKVAVENTLDEGEETNE-------------FLESLVI 48 Query: 75 GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134 G ++ K+ ID I L +KW R+ ++ SILR V E+ +P V I+E + IA Sbjct: 49 GFVENKEVIDEAIRQNL-KKWKLERISIVDRSILRVAVYEMKYMEEIPHNVTINEAIEIA 107 Query: 135 HDFFYGDEPKFINAVLDKV 153 F + +FIN VL + Sbjct: 108 KTFGDEESRRFINGVLSNI 126 >gi|332992370|gb|AEF02425.1| transcription antitermination protein NusB [Alteromonas sp. SN2] Length = 140 Score = 149 bits (376), Expect = 2e-34, Method: Composition-based stats. Identities = 46/146 (31%), Positives = 65/146 (44%), Gaps = 14/146 (9%) Query: 10 LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF 69 +K+S RR AR A+Q +Y + +I + L + VD+ +F Sbjct: 1 MKVSARR-KARELALQGIYSWQMSHNDIQQI-----------ELALATSNDMKKVDMAYF 48 Query: 70 RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISE 129 + ++ GV H+D I L LD I +ILR LEL E VP VII+E Sbjct: 49 QALLRGVAHSASHLDTTIKPYLGR--LPEELDAIEKAILRIATLELTERKDVPYRVIINE 106 Query: 130 YVCIAHDFFYGDEPKFINAVLDKVSR 155 + +A F + KFIN LDK R Sbjct: 107 AIELAKSFGAEESHKFINGALDKAVR 132 >gi|42783301|ref|NP_980548.1| transcription antitermination protein NusB [Bacillus cereus ATCC 10987] gi|81568850|sp|Q731B1|NUSB_BACC1 RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|42739229|gb|AAS43156.1| N utilization substance protein B [Bacillus cereus ATCC 10987] Length = 130 Score = 149 bits (376), Expect = 2e-34, Method: Composition-based stats. Identities = 42/139 (30%), Positives = 63/139 (45%), Gaps = 14/139 (10%) Query: 15 RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74 +R AR A+QALYQ+DI G +I E E + ++ Sbjct: 2 KRRTARERAMQALYQMDITGELEPKIAVENTLDEGEETNE-------------FLESLVV 48 Query: 75 GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134 G ++ K+ ID I L +KW R+ ++ SILR V E+ +P V I+E + IA Sbjct: 49 GFVENKEVIDEAIRQNL-KKWKLERISIVDRSILRVAVYEMKYMEEIPHNVTINEAIEIA 107 Query: 135 HDFFYGDEPKFINAVLDKV 153 F + +FIN VL + Sbjct: 108 KTFGDEESRRFINGVLSNI 126 >gi|170693624|ref|ZP_02884782.1| NusB antitermination factor [Burkholderia graminis C4D1M] gi|170141406|gb|EDT09576.1| NusB antitermination factor [Burkholderia graminis C4D1M] Length = 144 Score = 149 bits (376), Expect = 2e-34, Method: Composition-based stats. Identities = 42/150 (28%), Positives = 64/150 (42%), Gaps = 15/150 (10%) Query: 10 LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF 69 +K + RR R A Q LYQ + G EI D +L + D E Sbjct: 1 MKSARRRS--RELATQGLYQWLLSGSPGGEI-----------DAQLRGAQGFDKADHEHL 47 Query: 70 RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISE 129 I+HGV+ + + I+ CL +L + ++L EL +P V+I+E Sbjct: 48 DAILHGVIRDSEALSADIAPCLDR--PIEQLSPVERAVLLVAAFELKNHVDIPYRVVINE 105 Query: 130 YVCIAHDFFYGDEPKFINAVLDKVSRKEEI 159 V +A F D K++N VLDK++ K Sbjct: 106 AVELAKTFGGVDGYKYVNGVLDKLAAKLRA 135 >gi|83648594|ref|YP_437029.1| transcription antitermination protein NusB [Hahella chejuensis KCTC 2396] gi|119390775|sp|Q2S9S0|NUSB_HAHCH RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|83636637|gb|ABC32604.1| transcription antitermination factor NusB [Hahella chejuensis KCTC 2396] Length = 149 Score = 149 bits (376), Expect = 2e-34, Method: Composition-based stats. Identities = 45/146 (30%), Positives = 75/146 (51%), Gaps = 13/146 (8%) Query: 11 KLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFR 70 K +R AR A+QALYQ + G S ++I +E+ V++ VD + F+ Sbjct: 3 KAMEKRRAARKLALQALYQWRVAGASISQIEAEFA-----------VDNDLQQVDRDLFK 51 Query: 71 VIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEY 130 +++GV +D L+ + K + +D + S++R G EL VP V+I+E Sbjct: 52 AVLYGVPSSVSELDALLQPFVDRK--LTDVDPVELSLIRMGAFELRSRIEVPYRVVINEA 109 Query: 131 VCIAHDFFYGDEPKFINAVLDKVSRK 156 V +A F D KF+N+VLDK++ + Sbjct: 110 VELAKQFGGTDGHKFVNSVLDKLAPQ 135 >gi|319786237|ref|YP_004145712.1| NusB antitermination factor [Pseudoxanthomonas suwonensis 11-1] gi|317464749|gb|ADV26481.1| NusB antitermination factor [Pseudoxanthomonas suwonensis 11-1] Length = 156 Score = 149 bits (376), Expect = 2e-34, Method: Composition-based stats. Identities = 36/142 (25%), Positives = 67/142 (47%), Gaps = 16/142 (11%) Query: 24 VQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHI 83 +QA+Y I G + ++I+++ E + DL +F ++ GV+ + + Sbjct: 24 LQAIYAWQISGGNAQQVIAQFAH-----------EQAHEIADLTYFEDLVTGVLSHRASL 72 Query: 84 DLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEP 143 D ++ L + +D I ++LR EL+ VP V+I+E + IA F Sbjct: 73 DEALAPHLDR--AVEEVDAIERAVLRLAAYELLHRVDVPYRVVINEAIEIAKRFGSEHGH 130 Query: 144 KFINAVLDKVS---RKEEIKRS 162 ++N VLD+ S R+ E++ S Sbjct: 131 TYVNGVLDRASAQWRQAEVQAS 152 >gi|302517963|ref|ZP_07270305.1| transcription antitermination factor NusB [Streptomyces sp. SPB78] gi|302426858|gb|EFK98673.1| transcription antitermination factor NusB [Streptomyces sp. SPB78] Length = 144 Score = 149 bits (376), Expect = 2e-34, Method: Composition-based stats. Identities = 32/138 (23%), Positives = 62/138 (44%), Gaps = 9/138 (6%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 R AR A Q L++ D G +++++ + + V E+ ++ G Sbjct: 4 RNTARKRAFQILFEADQRGTDVLTVLADWVRHSRNDTQQPPVS--------EYTMELVEG 55 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135 + + ID +I+ + W R+ ++ +I+R G EL+ P V++ E V +A Sbjct: 56 YAEHARRIDEVIAKY-SVDWPLDRMPVVDRNIVRLGAHELVWVDGTPDAVVMDEAVELAK 114 Query: 136 DFFYGDEPKFINAVLDKV 153 +F D P F+N +L + Sbjct: 115 EFSTDDSPAFVNGLLGRF 132 >gi|15827185|ref|NP_301448.1| transcription antitermination protein NusB [Mycobacterium leprae TN] gi|221229663|ref|YP_002503079.1| transcription antitermination protein NusB [Mycobacterium leprae Br4923] gi|18202776|sp|Q9CCR9|NUSB_MYCLE RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|254772649|sp|B8ZUK7|NUSB_MYCLB RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|13092733|emb|CAC30031.1| putative transcription termination protein [Mycobacterium leprae] gi|219932770|emb|CAR70616.1| putative transcription termination protein [Mycobacterium leprae Br4923] Length = 190 Score = 149 bits (376), Expect = 2e-34, Method: Composition-based stats. Identities = 45/138 (32%), Positives = 65/138 (47%), Gaps = 9/138 (6%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 R AR AV L++ + S EII E A ++LDV ++ + V+ G Sbjct: 8 RHQARKRAVDLLFEAEARDLSPLEII---EVRSALAKSKLDVAPLH-----PYTVVVAQG 59 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135 V + ID LI S L + W RL + +ILR + EL+ VP V + E V +A Sbjct: 60 VSEHTARIDELIISHL-QGWKLDRLPAVDRAILRVSIWELLYADDVPEPVAVDEAVELAK 118 Query: 136 DFFYGDEPKFINAVLDKV 153 + D P F+N +L KV Sbjct: 119 ELSTDDSPGFVNGLLGKV 136 >gi|313889626|ref|ZP_07823269.1| transcription antitermination factor NusB [Streptococcus pseudoporcinus SPIN 20026] gi|313121923|gb|EFR45019.1| transcription antitermination factor NusB [Streptococcus pseudoporcinus SPIN 20026] Length = 143 Score = 149 bits (376), Expect = 2e-34, Method: Composition-based stats. Identities = 35/144 (24%), Positives = 64/144 (44%), Gaps = 7/144 (4%) Query: 14 HRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVII 73 + R R A QAL+ ++ G E+ RF D + + + + ++ Sbjct: 7 NSRRDLRERAFQALFNMEHGGDFL-------ESSRFAYDYDKVSDQDHPLDVPAFLLTLV 59 Query: 74 HGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCI 133 +GV + K+ +D +I L + WS RL + ++LR G+ E+ P V ++E + I Sbjct: 60 NGVNNHKEELDAIIKENLKKGWSIERLTLSDRTMLRLGLYEIKYFDETPDRVALNEIIEI 119 Query: 134 AHDFFYGDEPKFINAVLDKVSRKE 157 A + KFIN +L + + Sbjct: 120 AKKYSDETSAKFINGLLSQFVKDN 143 >gi|329938937|ref|ZP_08288311.1| Transcription termination protein NusB [Streptomyces griseoaurantiacus M045] gi|329301822|gb|EGG45715.1| Transcription termination protein NusB [Streptomyces griseoaurantiacus M045] Length = 142 Score = 149 bits (376), Expect = 2e-34, Method: Composition-based stats. Identities = 36/147 (24%), Positives = 67/147 (45%), Gaps = 12/147 (8%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 R AR A Q L++ D G +++++ + + V E+ ++ G Sbjct: 4 RNTARKRAFQILFEGDQRGADVLTVLADWVSLSRSDTRQPPVS--------EYTMQLVEG 55 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135 + ID L++ W+ R+ ++ +ILR G ELI P V++ E V +A Sbjct: 56 YAEHVTRIDELLAQYAV-GWTLDRMPVVDRNILRLGAYELIWVDETPDAVVLDEMVQLAK 114 Query: 136 DFFYGDEPKFINAVLDKVSRKEEIKRS 162 +F + P F+N +L ++ +E+K S Sbjct: 115 EFSTDESPGFVNGLLGRL---KELKPS 138 >gi|23099336|ref|NP_692802.1| transcription antitermination protein NusB [Oceanobacillus iheyensis HTE831] gi|32171652|sp|Q8EQ42|NUSB_OCEIH RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|22777565|dbj|BAC13837.1| transcriptional terminator [Oceanobacillus iheyensis HTE831] Length = 126 Score = 149 bits (376), Expect = 2e-34, Method: Composition-based stats. Identities = 41/139 (29%), Positives = 64/139 (46%), Gaps = 16/139 (11%) Query: 15 RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74 R AR A Q L+Q+DI E++ + + R ++ Sbjct: 2 NRHKAREKAFQVLFQLDINETELEEVMETLKEKERYDV---------------FLRSLVE 46 Query: 75 GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134 GV+ K ID IS+ L EKW+ R+ + +ILR +LE++ +P V I+E + +A Sbjct: 47 GVIQHKSVIDEKISTHL-EKWTIDRIASVERTILRMAILEIMYIDDIPQNVSINEAIELA 105 Query: 135 HDFFYGDEPKFINAVLDKV 153 H F KF+N VL K+ Sbjct: 106 HTFGDEQSGKFVNGVLSKI 124 >gi|295839941|ref|ZP_06826874.1| transcription antitermination factor NusB [Streptomyces sp. SPB74] gi|197696775|gb|EDY43708.1| transcription antitermination factor NusB [Streptomyces sp. SPB74] Length = 144 Score = 149 bits (376), Expect = 2e-34, Method: Composition-based stats. Identities = 32/138 (23%), Positives = 61/138 (44%), Gaps = 9/138 (6%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 R AR A Q L++ D G +++++ + + V E+ ++ G Sbjct: 4 RNTARKRAFQILFEADQRGTDVLTVLADWVRHSRSDTQQPPVS--------EYTMELVEG 55 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135 + ID +I+ + W R+ ++ +I+R G EL+ P V++ E V +A Sbjct: 56 YAAHARRIDEVIAKY-SVDWPLDRMPVVDRNIVRLGAHELVWVDGTPDAVVMDEAVELAK 114 Query: 136 DFFYGDEPKFINAVLDKV 153 +F D P F+N +L + Sbjct: 115 EFSTDDSPAFVNGLLGRF 132 >gi|134098647|ref|YP_001104308.1| NusB antitermination factor [Saccharopolyspora erythraea NRRL 2338] gi|291003667|ref|ZP_06561640.1| NusB antitermination factor [Saccharopolyspora erythraea NRRL 2338] gi|166918811|sp|A4FBF8|NUSB_SACEN RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|133911270|emb|CAM01383.1| NusB antitermination factor [Saccharopolyspora erythraea NRRL 2338] Length = 148 Score = 149 bits (376), Expect = 2e-34, Method: Composition-based stats. Identities = 40/140 (28%), Positives = 63/140 (45%), Gaps = 14/140 (10%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 R AR AV LY+ D+ G ++S V S L E+ ++ G Sbjct: 4 RNKARKRAVDVLYEADLRGEDAVTLLS------------GRVGSPDLPPVNEYTVTLVEG 51 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIEC-HSVPVEVIISEYVCIA 134 V +Q ID L+ E W+ +R+ + ++LR G+ EL+ VP V I E V + Sbjct: 52 VTANRQRIDELLVEH-AEGWTLARMPAVDRAVLRLGLYELLWRSDDVPPAVAIDEAVELV 110 Query: 135 HDFFYGDEPKFINAVLDKVS 154 D P+F+N VL +++ Sbjct: 111 KALSTDDSPRFVNGVLGRIA 130 >gi|257875394|ref|ZP_05655047.1| antitermination protein NusB [Enterococcus casseliflavus EC20] gi|257809560|gb|EEV38380.1| antitermination protein NusB [Enterococcus casseliflavus EC20] Length = 154 Score = 149 bits (376), Expect = 2e-34, Method: Composition-based stats. Identities = 38/153 (24%), Positives = 68/153 (44%), Gaps = 3/153 (1%) Query: 10 LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF 69 + R R A+QAL+ +D T + + + + ++ H + Sbjct: 1 MSKELSRHEIRKMALQALFPLDFNKDLTKQ---DAIMHAIELEHHELIDEEQEHFVPVYL 57 Query: 70 RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISE 129 ++ GV K+ +D +I S L W RL + +ILR + E+I +VP V ++E Sbjct: 58 DQLVAGVCHYKEALDEVIQSHLKSGWKIQRLSKMDVTILRIALYEMIYVDNVPNRVALNE 117 Query: 130 YVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRS 162 + +A F KF+N +L V+++ E K S Sbjct: 118 AIELAKTFSDDQSRKFVNGILSTVNQELETKAS 150 >gi|257095841|ref|YP_003169482.1| NusB antitermination factor [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] gi|257048365|gb|ACV37553.1| NusB antitermination factor [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] Length = 164 Score = 149 bits (376), Expect = 2e-34, Method: Composition-based stats. Identities = 40/152 (26%), Positives = 64/152 (42%), Gaps = 13/152 (8%) Query: 3 IQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYL 62 + + R AR A+QALYQ + G I + L + Sbjct: 7 TTPGARPASVRSPRRRAREFALQALYQWQLSGNDEAAIEA-----------HLGDSEGFD 55 Query: 63 HVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVP 122 D E+F ++ GV+ +++ + + + L F L + +L AG EL P Sbjct: 56 KADREFFAGLLRGVLAQRRTLQEQLQAFLDR--PFGELSPVEACVLLAGAFELNNHPQTP 113 Query: 123 VEVIISEYVCIAHDFFYGDEPKFINAVLDKVS 154 VII+E V +A F D K++N VLDK++ Sbjct: 114 YGVIINESVELAKGFGGTDGHKYVNGVLDKLA 145 >gi|84515388|ref|ZP_01002750.1| putative N utilization substance protein B [Loktanella vestfoldensis SKA53] gi|84510671|gb|EAQ07126.1| putative N utilization substance protein B [Loktanella vestfoldensis SKA53] Length = 155 Score = 149 bits (376), Expect = 2e-34, Method: Composition-based stats. Identities = 55/162 (33%), Positives = 92/162 (56%), Gaps = 11/162 (6%) Query: 1 MTIQDN-KKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVES 59 MTI +N ++ +K AR AVQAL+Q++ G + I+ E+E +RF E+ + Sbjct: 1 MTISNNQRRKMK-----SAARFYAVQALFQMEATGQTVEGIVREFEDHRFG---EIIDDV 52 Query: 60 VYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECH 119 + D++ FR ++ +D + ID + L EKW +R+D ++ RA EL++ Sbjct: 53 ELVEGDVDTFRRMMDRAVDLQASIDQMTDRALVEKWPIARIDPTWRALFRAAGAELLD-K 111 Query: 120 SVPVEVIISEYVCIAHDFF-YGDEPKFINAVLDKVSRKEEIK 160 P +V+ISE+V +A F G EPKF+NAVLD ++R+ + + Sbjct: 112 DTPPKVVISEFVAVAEAFSHDGKEPKFVNAVLDHMARQAQPE 153 >gi|325569721|ref|ZP_08145768.1| N utilization substance protein B [Enterococcus casseliflavus ATCC 12755] gi|325157277|gb|EGC69442.1| N utilization substance protein B [Enterococcus casseliflavus ATCC 12755] Length = 154 Score = 148 bits (375), Expect = 2e-34, Method: Composition-based stats. Identities = 37/153 (24%), Positives = 68/153 (44%), Gaps = 3/153 (1%) Query: 10 LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF 69 + R R A+QAL+ +D T + + + + ++ H + Sbjct: 1 MSKELSRHEIRKMALQALFPLDFNKDLTKQ---DAIMHAIELEHHELIDEEQEHFVPVYL 57 Query: 70 RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISE 129 ++ GV K+ +D +I S L W RL + +ILR + E+I +VP V ++E Sbjct: 58 DQLVAGVCHYKEALDEVIQSHLKAGWKIQRLSKMDVTILRIALYEMIYVDNVPNRVALNE 117 Query: 130 YVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRS 162 + +A F KF+N +L V+++ E K + Sbjct: 118 AIELAKTFSDDQSRKFVNGILSTVNQELETKNN 150 >gi|302533374|ref|ZP_07285716.1| transcription antitermination factor NusB [Streptomyces sp. C] gi|302442269|gb|EFL14085.1| transcription antitermination factor NusB [Streptomyces sp. C] Length = 143 Score = 148 bits (375), Expect = 2e-34, Method: Composition-based stats. Identities = 41/147 (27%), Positives = 68/147 (46%), Gaps = 12/147 (8%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 R AR A Q L++ D G E+++++ + D + V + ++ G Sbjct: 4 RSNARKRAFQILFEADQRGVPVREVLADWIRHSRSDDRQPPVN--------AFTMDLVEG 55 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135 D+ + ID LI + W R+ ++ +ILR G ELI P V I E V +A Sbjct: 56 YADKVKRIDDLIVTYAV-DWELDRMPVVDRNILRLGAYELIWVDETPDAVAIDEAVQLAK 114 Query: 136 DFFYGDEPKFINAVLDKVSRKEEIKRS 162 +F D P F+N +L +R +++K S Sbjct: 115 EFSTDDSPAFVNGLL---ARFKDLKPS 138 >gi|332970403|gb|EGK09395.1| transcription antitermination factor NusB [Kingella kingae ATCC 23330] Length = 151 Score = 148 bits (375), Expect = 2e-34, Method: Composition-based stats. Identities = 46/165 (27%), Positives = 70/165 (42%), Gaps = 17/165 (10%) Query: 1 MTIQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESV 60 M + N+ K S RR AR AVQALYQ+ + E+ S + Sbjct: 1 MESKMNQPKTKKSPRRR-AREFAVQALYQVAMNQSIAAEVASHMREH-----------GD 48 Query: 61 YLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHS 120 + + D E F + G ++ I L + ++ I +IL EL Sbjct: 49 FKNADNELFTELFFGAHQNQREYMQHIRPHLDRDE--NAVNPIERAILLLATHELAAMPQ 106 Query: 121 VPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVS---RKEEIKRS 162 P V+I+E V + F D KFIN++LDK++ R +E KR+ Sbjct: 107 TPYPVVINEAVELTKTFGGTDSHKFINSILDKLAGELRPDEPKRN 151 >gi|121605810|ref|YP_983139.1| transcription antitermination protein NusB [Polaromonas naphthalenivorans CJ2] gi|120594779|gb|ABM38218.1| NusB antitermination factor [Polaromonas naphthalenivorans CJ2] Length = 173 Score = 148 bits (375), Expect = 2e-34, Method: Composition-based stats. Identities = 40/154 (25%), Positives = 65/154 (42%), Gaps = 14/154 (9%) Query: 1 MTIQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESV 60 +T KK S R AR A+QALYQ + I D Sbjct: 18 LTDTGVKKAADKSA-RTRAREFALQALYQHLVGQNGADSI-----------DAFTRDLVG 65 Query: 61 YLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHS 120 + D + ++HG ++ ++ +D I+ L K + + + +IL G E C Sbjct: 66 FHKADSAHYDALLHGCIESEKALDENITPLLDRK--MAEISPVEHAILWIGAYEFTNCLD 123 Query: 121 VPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVS 154 VP V+I+E + +A F D K++N VL K++ Sbjct: 124 VPYRVVINECIELAKAFGGTDGHKYVNGVLHKMA 157 >gi|312139563|ref|YP_004006899.1| transcriptional antiterminator factor nusb [Rhodococcus equi 103S] gi|325672553|ref|ZP_08152249.1| transcription antitermination protein NusB [Rhodococcus equi ATCC 33707] gi|311888902|emb|CBH48215.1| transcriptional antiterminator factor NusB [Rhodococcus equi 103S] gi|325556430|gb|EGD26096.1| transcription antitermination protein NusB [Rhodococcus equi ATCC 33707] Length = 167 Score = 148 bits (375), Expect = 2e-34, Method: Composition-based stats. Identities = 38/144 (26%), Positives = 59/144 (40%), Gaps = 9/144 (6%) Query: 11 KLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFR 70 K R AR AV L++ + ++ E D+ V + Sbjct: 6 KKLGARHKARKRAVDFLFEAEARDVDPVDLADERSDLAGRDDSVAPV--------APYTV 57 Query: 71 VIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEY 130 ++ GV + +D +I S L + W+ RL + +ILR V EL VP V + E Sbjct: 58 TVVQGVAENLDRLDQVIESHL-QDWTLDRLPAVDRAILRIAVWELFHATDVPPVVAVDEA 116 Query: 131 VCIAHDFFYGDEPKFINAVLDKVS 154 V +A + D P F+N VL +V Sbjct: 117 VELAKELSTDDSPGFVNGVLGQVV 140 >gi|148261108|ref|YP_001235235.1| NusB antitermination factor [Acidiphilium cryptum JF-5] gi|326404509|ref|YP_004284591.1| transcription antitermination protein NusB [Acidiphilium multivorum AIU301] gi|146402789|gb|ABQ31316.1| NusB antitermination factor [Acidiphilium cryptum JF-5] gi|325051371|dbj|BAJ81709.1| transcription antitermination protein NusB [Acidiphilium multivorum AIU301] Length = 165 Score = 148 bits (375), Expect = 2e-34, Method: Composition-based stats. Identities = 51/151 (33%), Positives = 77/151 (50%), Gaps = 2/151 (1%) Query: 7 KKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELD--VESVYLHV 64 K + R +AR AAVQALYQ + G + +I ++ +RF + E Sbjct: 2 KPAGSKARPRTLARAAAVQALYQCEHAGETAETVIDQFVRHRFGRMAGMLGVEEGEVPPP 61 Query: 65 DLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVE 124 D+ F I+ ++ +D LI+ L E W RLD +L ++LRA EL P Sbjct: 62 DVPLFSRIVRTATAQQDVVDPLIAGVLPEAWPMPRLDPVLRALLRAAGAELWMTDGPPAR 121 Query: 125 VIISEYVCIAHDFFYGDEPKFINAVLDKVSR 155 V+I+EY+ +AH F GD + NAVLD+++R Sbjct: 122 VVINEYLDVAHGFLEGDAVQMGNAVLDRIAR 152 >gi|257865766|ref|ZP_05645419.1| antitermination protein NusB [Enterococcus casseliflavus EC30] gi|257872101|ref|ZP_05651754.1| antitermination protein NusB [Enterococcus casseliflavus EC10] gi|257799700|gb|EEV28752.1| antitermination protein NusB [Enterococcus casseliflavus EC30] gi|257806265|gb|EEV35087.1| antitermination protein NusB [Enterococcus casseliflavus EC10] Length = 154 Score = 148 bits (375), Expect = 2e-34, Method: Composition-based stats. Identities = 37/153 (24%), Positives = 68/153 (44%), Gaps = 3/153 (1%) Query: 10 LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF 69 + R R A+QAL+ +D T + + + + ++ H + Sbjct: 1 MSKELSRHEIRKMALQALFPLDFNKDLTKQ---DAIMHAIELEHHELIDEEQEHFVPVYL 57 Query: 70 RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISE 129 ++ GV K+ +D +I S L W RL + +ILR + E+I +VP V ++E Sbjct: 58 DQLVAGVCHYKEALDEVIQSHLKSGWKIQRLSKMDVTILRIALYEMIYVDNVPNRVALNE 117 Query: 130 YVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRS 162 + +A F KF+N +L V+++ E K + Sbjct: 118 AIELAKTFSDDQSRKFVNGILSTVNQELETKTN 150 >gi|118470676|ref|YP_887353.1| transcription antitermination protein NusB [Mycobacterium smegmatis str. MC2 155] gi|166215698|sp|A0QWR5|NUSB_MYCS2 RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|118171963|gb|ABK72859.1| transcription antitermination factor NusB [Mycobacterium smegmatis str. MC2 155] Length = 160 Score = 148 bits (375), Expect = 2e-34, Method: Composition-based stats. Identities = 39/146 (26%), Positives = 62/146 (42%), Gaps = 9/146 (6%) Query: 8 KDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLE 67 D + R AR AV L++ + G + + D + Sbjct: 2 PDRRGDRGRHQARKRAVDLLFEAEARGLTAEAVADSRAALAEDQDDVAPLN--------P 53 Query: 68 WFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVII 127 + ++ GV + HID LIS+ L + W+ RL + +ILR V EL+ VP V + Sbjct: 54 YTVLVARGVTEHAAHIDDLISAHL-QGWTLERLPAVDRAILRVAVWELLHAEDVPEPVAV 112 Query: 128 SEYVCIAHDFFYGDEPKFINAVLDKV 153 E V +A + + P F+N VL +V Sbjct: 113 DEAVELAKELSTDESPGFVNGVLGQV 138 >gi|325923217|ref|ZP_08184896.1| transcription antitermination factor NusB [Xanthomonas gardneri ATCC 19865] gi|325546299|gb|EGD17474.1| transcription antitermination factor NusB [Xanthomonas gardneri ATCC 19865] Length = 131 Score = 148 bits (375), Expect = 2e-34, Method: Composition-based stats. Identities = 38/144 (26%), Positives = 63/144 (43%), Gaps = 16/144 (11%) Query: 24 VQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHI 83 +QA+Y I G ++IS++ E + DL +F ++ GV+ + + Sbjct: 1 MQAVYAWQISGGFAKQVISQFAH-----------EQAHEVADLAYFESLVEGVLTNRAEL 49 Query: 84 DLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEP 143 D ++ L +D I ++LR EL+ VP V+I+E + A F Sbjct: 50 DTALTPYLDRG--VEEVDAIERAVLRLAAYELLYRQDVPYRVVINEAIETAKRFGSEHGH 107 Query: 144 KFINAVLDKVS---RKEEIKRSGC 164 ++N VLD+ S RK E SG Sbjct: 108 TYVNGVLDRASVEWRKVESGASGA 131 >gi|89895110|ref|YP_518597.1| hypothetical protein DSY2364 [Desulfitobacterium hafniense Y51] gi|219669523|ref|YP_002459958.1| NusB antitermination factor [Desulfitobacterium hafniense DCB-2] gi|119390768|sp|Q24UY9|NUSB_DESHY RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|254772633|sp|B8FQ61|NUSB_DESHD RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|89334558|dbj|BAE84153.1| hypothetical protein [Desulfitobacterium hafniense Y51] gi|219539783|gb|ACL21522.1| NusB antitermination factor [Desulfitobacterium hafniense DCB-2] Length = 148 Score = 148 bits (375), Expect = 2e-34, Method: Composition-based stats. Identities = 38/145 (26%), Positives = 65/145 (44%), Gaps = 10/145 (6%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 R +AR A+Q L+Q+++ G S A + E + + + G Sbjct: 3 RRLARETALQVLFQLEMTGESQD---------LKSAIHKWADEFAVPEGSIPFAEELAEG 53 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135 + K+ ID + L+E WS +R+ + ++LR E++ +P V I+E + IA Sbjct: 54 TLTHKEVIDENLEK-LSEGWSLARMANVDRNLLRLASYEILFRKDIPGRVTINEAIEIAK 112 Query: 136 DFFYGDEPKFINAVLDKVSRKEEIK 160 + + KFIN +LDKV K Sbjct: 113 RYGSEESGKFINGILDKVVESVNKK 137 >gi|308069602|ref|YP_003871207.1| N utilization substance protein B-like protein [Paenibacillus polymyxa E681] gi|305858881|gb|ADM70669.1| N utilization substance protein B-like protein [Paenibacillus polymyxa E681] Length = 149 Score = 148 bits (375), Expect = 2e-34, Method: Composition-based stats. Identities = 37/144 (25%), Positives = 65/144 (45%), Gaps = 2/144 (1%) Query: 15 RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74 +R +AR AVQ++Y +++ + E +V V + + Sbjct: 2 KRRLARELAVQSMYHMEMNEVDAAAAVDMLLQEAAEE-NEAEVVVKNAAVLRAYVLEHVR 60 Query: 75 GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134 G + K+ ID L+ L + W SRL + ILR E+I VP +V ++E + ++ Sbjct: 61 GTWEHKEAIDGLLVDYL-KGWQISRLSRVDRQILRLAAYEMIFREDVPAKVAVNEAIELS 119 Query: 135 HDFFYGDEPKFINAVLDKVSRKEE 158 F + KF+N VL +V ++ E Sbjct: 120 KHFGTEESGKFVNGVLGRVIQELE 143 >gi|317505974|ref|ZP_07963806.1| transcription antitermination factor NusB [Segniliparus rugosus ATCC BAA-974] gi|316255750|gb|EFV14988.1| transcription antitermination factor NusB [Segniliparus rugosus ATCC BAA-974] Length = 166 Score = 148 bits (375), Expect = 2e-34, Method: Composition-based stats. Identities = 43/167 (25%), Positives = 68/167 (40%), Gaps = 8/167 (4%) Query: 1 MTIQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESV 60 M+ K + R ARL AV+ L++ + E+ +E V+ + Sbjct: 1 MSDPAKSDSAKRAGSRRKARLRAVELLFEAEARDLDPAELAAERSAEL--------VKDL 52 Query: 61 YLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHS 120 + V++ GV D + +D IS L WS +RL + SILR V EL+ Sbjct: 53 SAPQLTPYALVVLEGVRDHLEVVDQTISDHLRGDWSLNRLPAVDRSILRVAVWELLFAPE 112 Query: 121 VPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRSGCVSA 167 VP V + E + +A + P FIN VL ++ R + Sbjct: 113 VPTAVAVDEALELAKGLSTDESPGFINGVLGRLVELANQIRGAAEAG 159 >gi|300692261|ref|YP_003753256.1| antitermination factor (N utilization substance B) (transcriptional antiterminator) [Ralstonia solanacearum PSI07] gi|299079321|emb|CBJ51993.1| antitermination factor (N utilization substance B) (transcriptional antiterminator) [Ralstonia solanacearum PSI07] Length = 155 Score = 148 bits (375), Expect = 2e-34, Method: Composition-based stats. Identities = 35/156 (22%), Positives = 62/156 (39%), Gaps = 15/156 (9%) Query: 1 MTIQDNKKDLKLSHR--RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVE 58 MT + K + R AR A+Q LYQ + + + Sbjct: 1 MTQDTSPAKPKAPPKSARRRARELALQGLYQWLLNRNDPGVVEAHLHD-----------A 49 Query: 59 SVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIEC 118 + D F ++HG + + + + L + L + + L G EL+ C Sbjct: 50 QGFNKADRAHFDALLHGAIREEATLTESFTPFLDR--PVAELSPVERAALLVGAYELVHC 107 Query: 119 HSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVS 154 +P +V+I+E V +A F + K++N VLDK++ Sbjct: 108 VDIPYKVVINEAVELAKTFGGVEGYKYVNGVLDKLA 143 >gi|226366336|ref|YP_002784119.1| transcription antitermination protein NusB [Rhodococcus opacus B4] gi|254772652|sp|C1B4I5|NUSB_RHOOB RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|226244826|dbj|BAH55174.1| transcription antitermination protein NusB [Rhodococcus opacus B4] Length = 169 Score = 148 bits (375), Expect = 2e-34, Method: Composition-based stats. Identities = 37/144 (25%), Positives = 61/144 (42%), Gaps = 9/144 (6%) Query: 11 KLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFR 70 K R AR AV L++ + ++ +E EL + + + Sbjct: 6 KKLGARHKARKRAVDFLFEAEARDLDPVDLATER--------AELSGKDDSVAPVAPYTV 57 Query: 71 VIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEY 130 ++ GV + +D +ISS L + W+ RL + +ILR V EL VP V + E Sbjct: 58 TVVTGVAENLDRLDEVISSHL-QDWTLERLPAVDRAILRIAVWELFHATDVPPVVAVDEA 116 Query: 131 VCIAHDFFYGDEPKFINAVLDKVS 154 V +A + P F+N +L +V Sbjct: 117 VELAKQLSTDESPGFVNGILGQVV 140 >gi|332523180|ref|ZP_08399432.1| transcription antitermination factor NusB [Streptococcus porcinus str. Jelinkova 176] gi|332314444|gb|EGJ27429.1| transcription antitermination factor NusB [Streptococcus porcinus str. Jelinkova 176] Length = 143 Score = 148 bits (374), Expect = 2e-34, Method: Composition-based stats. Identities = 34/144 (23%), Positives = 63/144 (43%), Gaps = 7/144 (4%) Query: 14 HRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVII 73 + R R A QAL+ ++ G E+ +F D + + + + ++ Sbjct: 7 NSRRDLRERAFQALFNMEHGGDFL-------ESSQFAYDYDKVSDQDHPLDIPAFLLTLV 59 Query: 74 HGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCI 133 +GV + K +D +I L + WS RL + ++LR G+ E+ P V ++E + I Sbjct: 60 NGVNNHKDELDAIIKENLKKGWSIERLTLSDRTMLRLGLYEIKYFDETPDRVALNEIIEI 119 Query: 134 AHDFFYGDEPKFINAVLDKVSRKE 157 A + KFIN +L + + Sbjct: 120 AKKYSDETSAKFINGLLSQFVKDN 143 >gi|257792277|ref|YP_003182883.1| NusB antitermination factor [Eggerthella lenta DSM 2243] gi|257476174|gb|ACV56494.1| NusB antitermination factor [Eggerthella lenta DSM 2243] Length = 195 Score = 148 bits (374), Expect = 3e-34, Method: Composition-based stats. Identities = 42/152 (27%), Positives = 70/152 (46%), Gaps = 14/152 (9%) Query: 12 LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71 H R AR AA+Q LY +I S I ++ LD + E+ Sbjct: 4 KRHERTSARRAALQVLYTSEITDESPAAIAE--------GNSRLDEDGPLP----EYALK 51 Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131 ++ GV + ID ++ +E WS +R+ ++ SILR E++ VP V I+E V Sbjct: 52 LVLGVESHRCAIDNHLA-ATSENWSLARMPIVDRSILRLATFEMMYIDDVPTSVTINEAV 110 Query: 132 CIAHDFFYGD-EPKFINAVLDKVSRKEEIKRS 162 +A DF D +F+N +L ++++ E + Sbjct: 111 ELAKDFGGEDESHRFVNGILGRIAKMLEGEED 142 >gi|15609670|ref|NP_217049.1| transcription antitermination protein NusB [Mycobacterium tuberculosis H37Rv] gi|148662371|ref|YP_001283894.1| transcription antitermination protein NusB [Mycobacterium tuberculosis H37Ra] gi|148823728|ref|YP_001288482.1| transcription antitermination protein NusB [Mycobacterium tuberculosis F11] gi|167967008|ref|ZP_02549285.1| transcription antitermination protein NusB [Mycobacterium tuberculosis H37Ra] gi|215404474|ref|ZP_03416655.1| transcription antitermination protein NusB [Mycobacterium tuberculosis 02_1987] gi|215412305|ref|ZP_03421065.1| transcription antitermination protein NusB [Mycobacterium tuberculosis 94_M4241A] gi|215446785|ref|ZP_03433537.1| transcription antitermination protein NusB [Mycobacterium tuberculosis T85] gi|218754265|ref|ZP_03533061.1| transcription antitermination protein NusB [Mycobacterium tuberculosis GM 1503] gi|253798387|ref|YP_003031388.1| N utilization substance protein B nusB [Mycobacterium tuberculosis KZN 1435] gi|254232655|ref|ZP_04925982.1| N utilization substance protein nusB (nusb protein) [Mycobacterium tuberculosis C] gi|254366739|ref|ZP_04982782.1| N utilization substance protein nusB (nusb protein) [Mycobacterium tuberculosis str. Haarlem] gi|254551582|ref|ZP_05142029.1| transcription antitermination protein NusB [Mycobacterium tuberculosis '98-R604 INH-RIF-EM'] gi|289553678|ref|ZP_06442888.1| N utilization substance protein B nusB [Mycobacterium tuberculosis KZN 605] gi|289746319|ref|ZP_06505697.1| N utilization substance protein nusB [Mycobacterium tuberculosis 02_1987] gi|289758663|ref|ZP_06518041.1| transcription antitermination protein NusB [Mycobacterium tuberculosis T85] gi|289762701|ref|ZP_06522079.1| N utilization substance protein nusB (nusb protein) [Mycobacterium tuberculosis GM 1503] gi|294994358|ref|ZP_06800049.1| transcription antitermination protein NusB [Mycobacterium tuberculosis 210] gi|297635143|ref|ZP_06952923.1| transcription antitermination protein NusB [Mycobacterium tuberculosis KZN 4207] gi|297732134|ref|ZP_06961252.1| transcription antitermination protein NusB [Mycobacterium tuberculosis KZN R506] gi|298526007|ref|ZP_07013416.1| transcription antitermination protein NusB [Mycobacterium tuberculosis 94_M4241A] gi|306776807|ref|ZP_07415144.1| N utilization substance protein B nusB [Mycobacterium tuberculosis SUMu001] gi|306780573|ref|ZP_07418910.1| N utilization substance protein B nusB [Mycobacterium tuberculosis SUMu002] gi|306789935|ref|ZP_07428257.1| N utilization substance protein B nusB [Mycobacterium tuberculosis SUMu004] gi|313659467|ref|ZP_07816347.1| transcription antitermination protein NusB [Mycobacterium tuberculosis KZN V2475] gi|7387976|sp|P95020|NUSB_MYCTU RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|166215701|sp|A5U5N2|NUSB_MYCTA RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|8569494|pdb|1EYV|A Chain A, The Crystal Structure Of Nusb From Mycobacterium Tuberculosis gi|8569495|pdb|1EYV|B Chain B, The Crystal Structure Of Nusb From Mycobacterium Tuberculosis gi|1781069|emb|CAB06175.1| N UTILIZATION SUBSTANCE PROTEIN NUSB (NUSB PROTEIN) [Mycobacterium tuberculosis H37Rv] gi|124601714|gb|EAY60724.1| N utilization substance protein nusB (nusb protein) [Mycobacterium tuberculosis C] gi|134152250|gb|EBA44295.1| N utilization substance protein nusB (nusb protein) [Mycobacterium tuberculosis str. Haarlem] gi|148506523|gb|ABQ74332.1| transcription antitermination protein NusB [Mycobacterium tuberculosis H37Ra] gi|148722255|gb|ABR06880.1| N utilization substance protein B nusB [Mycobacterium tuberculosis F11] gi|253319890|gb|ACT24493.1| N utilization substance protein B nusB [Mycobacterium tuberculosis KZN 1435] gi|289438310|gb|EFD20803.1| N utilization substance protein B nusB [Mycobacterium tuberculosis KZN 605] gi|289686847|gb|EFD54335.1| N utilization substance protein nusB [Mycobacterium tuberculosis 02_1987] gi|289710207|gb|EFD74223.1| N utilization substance protein nusB (nusb protein) [Mycobacterium tuberculosis GM 1503] gi|289714227|gb|EFD78239.1| transcription antitermination protein NusB [Mycobacterium tuberculosis T85] gi|298495801|gb|EFI31095.1| transcription antitermination protein NusB [Mycobacterium tuberculosis 94_M4241A] gi|308214814|gb|EFO74213.1| N utilization substance protein B nusB [Mycobacterium tuberculosis SUMu001] gi|308326587|gb|EFP15438.1| N utilization substance protein B nusB [Mycobacterium tuberculosis SUMu002] gi|308333625|gb|EFP22476.1| N utilization substance protein B nusB [Mycobacterium tuberculosis SUMu004] gi|323718889|gb|EGB28044.1| N utilization substance protein B nusB [Mycobacterium tuberculosis CDC1551A] gi|326904148|gb|EGE51081.1| N utilization substance protein B nusB [Mycobacterium tuberculosis W-148] gi|328458157|gb|AEB03580.1| N utilization substance protein B nusB [Mycobacterium tuberculosis KZN 4207] Length = 156 Score = 148 bits (374), Expect = 3e-34, Method: Composition-based stats. Identities = 44/145 (30%), Positives = 70/145 (48%), Gaps = 9/145 (6%) Query: 9 DLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEW 68 D K R AR AV L++ ++ G S E++ T A+ + D+ ++ + Sbjct: 3 DRKPVRGRHQARKRAVALLFEAEVRGISAAEVVD---TRAALAEAKPDIARLH-----PY 54 Query: 69 FRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIIS 128 + GV + HID LI++ L W+ RL + +ILR V EL+ VP V++ Sbjct: 55 TAAVARGVSEHAAHIDDLITAHL-RGWTLDRLPAVDRAILRVSVWELLHAADVPEPVVVD 113 Query: 129 EYVCIAHDFFYGDEPKFINAVLDKV 153 E V +A + D P F+N VL +V Sbjct: 114 EAVQLAKELSTDDSPGFVNGVLGQV 138 >gi|25008871|sp|Q8K9A2|NUSB_BUCAP RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|21623355|gb|AAM67990.1| N utilization substance protein B [Buchnera aphidicola str. Sg (Schizaphis graminum)] Length = 138 Score = 148 bits (374), Expect = 3e-34, Method: Composition-based stats. Identities = 42/141 (29%), Positives = 64/141 (45%), Gaps = 13/141 (9%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 R AR A+Q LY +I + + E+ E ++D+ +F +I G Sbjct: 8 RRKARACALQMLYSWEISQNNIKDSAIEFLK-----------EKNKKNIDIIYFYELIIG 56 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135 + + ID L+ L+ S L I +ILR EL + +P +V I+E + +A Sbjct: 57 ITYNCRSIDDLMKPYLSR--SLKELGQIEKAILRISFYELYKRKDIPYKVSINEGIELAK 114 Query: 136 DFFYGDEPKFINAVLDKVSRK 156 F D KFIN VLDK + K Sbjct: 115 LFGSEDSHKFINGVLDKAALK 135 >gi|218781155|ref|YP_002432473.1| NusB antitermination factor [Desulfatibacillum alkenivorans AK-01] gi|226738896|sp|B8FJ78|NUSB_DESAA RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|218762539|gb|ACL05005.1| NusB antitermination factor [Desulfatibacillum alkenivorans AK-01] Length = 143 Score = 148 bits (374), Expect = 3e-34, Method: Composition-based stats. Identities = 33/152 (21%), Positives = 63/152 (41%), Gaps = 16/152 (10%) Query: 15 RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74 +R AR A+Q+L+ +D E + + ++F + Sbjct: 3 KRRRARELALQSLFYVDSTSAPPLEALDLFCQ-----------NFPPPKDLAQFFYELAK 51 Query: 75 GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134 GV++ + ID LI + W R+ + +++R E + C VP V I+E + I Sbjct: 52 GVINNQDEIDRLIEQH-SNNWKLYRMSAVDLNLMRIAAYEFLFCPDVPRRVSINEAIDIG 110 Query: 135 HDFFYGDEPKFINAVLDKV----SRKEEIKRS 162 F + FIN +LD + ++E+ ++ Sbjct: 111 KRFGTAESGAFINGILDSIHLHLGKEEKAEKK 142 >gi|304316761|ref|YP_003851906.1| NusB antitermination factor [Thermoanaerobacterium thermosaccharolyticum DSM 571] gi|302778263|gb|ADL68822.1| NusB antitermination factor [Thermoanaerobacterium thermosaccharolyticum DSM 571] Length = 140 Score = 148 bits (374), Expect = 3e-34, Method: Composition-based stats. Identities = 36/149 (24%), Positives = 65/149 (43%), Gaps = 15/149 (10%) Query: 15 RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74 R AR V+ LYQ D+ +I++ + ES + ++ + Sbjct: 2 NRTQAREWLVKLLYQFDVSKSEPPDILNRF------------FESNDPEEEKDYIEKTFY 49 Query: 75 GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134 G+++ +ID I L + W +R+ I +I+R E++ C +P V I+E V IA Sbjct: 50 GIVENVNNIDDRIKKYL-KNWDINRIAKIDLAIIRCSFYEILYCDDIPNSVSINEAVEIA 108 Query: 135 HDFFYGDEPKFINAVLDKVSRKEEIKRSG 163 + P FIN +L + + + +G Sbjct: 109 KKYSTEKSPSFINGILGSLVK--DFNNNG 135 >gi|254498159|ref|ZP_05110911.1| transcription termination factor NusB [Legionella drancourtii LLAP12] gi|254352625|gb|EET11408.1| transcription termination factor NusB [Legionella drancourtii LLAP12] Length = 147 Score = 148 bits (374), Expect = 3e-34, Method: Composition-based stats. Identities = 34/141 (24%), Positives = 69/141 (48%), Gaps = 13/141 (9%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 + AR A+QALYQ + G +EI +++ VD+++F +++G Sbjct: 9 KRKARKLALQALYQWFMSGSEVSEIEAQFRLIN-----------NMSKVDVDYFCRLLYG 57 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135 + + ++ S L + L+ I ++LR G EL C VP +V++ E + + Sbjct: 58 IPEHINELENSFSPFLDRE--VHELNPIELTVLRLGSFELFHCPEVPYKVVLDEAISLTK 115 Query: 136 DFFYGDEPKFINAVLDKVSRK 156 +F D +++N VL+ ++++ Sbjct: 116 EFGSQDGYRYVNGVLNNLAQQ 136 >gi|299822999|ref|ZP_07054885.1| transcription antitermination factor NusB [Listeria grayi DSM 20601] gi|299816528|gb|EFI83766.1| transcription antitermination factor NusB [Listeria grayi DSM 20601] Length = 130 Score = 148 bits (374), Expect = 3e-34, Method: Composition-based stats. Identities = 39/146 (26%), Positives = 67/146 (45%), Gaps = 17/146 (11%) Query: 15 RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74 +R AR A+QAL+Q+++ S + +S +V ++ + ++ Sbjct: 2 KRREAREVALQALFQMELNEMSFEQAVS----------------NVMPEEQDDYVKKLVS 45 Query: 75 GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134 GV K ID I + L W RL+ + SILR V E+ C +P V ++E + I+ Sbjct: 46 GVDTHKADIDTAIEAHLD-NWRKDRLNKVDLSILRLSVFEMKYCEDIPDRVSLNEAIEIS 104 Query: 135 HDFFYGDEPKFINAVLDKVSRKEEIK 160 + KFIN VL + ++ + K Sbjct: 105 KVYSDEKSSKFINGVLANIVQESDDK 130 >gi|257869052|ref|ZP_05648705.1| antitermination protein NusB [Enterococcus gallinarum EG2] gi|257803216|gb|EEV32038.1| antitermination protein NusB [Enterococcus gallinarum EG2] Length = 150 Score = 148 bits (374), Expect = 3e-34, Method: Composition-based stats. Identities = 36/153 (23%), Positives = 66/153 (43%), Gaps = 3/153 (1%) Query: 10 LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF 69 + R R A+QAL+ +D T + + + + ++ H + Sbjct: 1 MSKELSRHEIRKMALQALFPLDFNKDLTKQ---DAIMHAIELEHHELIDEEQEHFVPAYL 57 Query: 70 RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISE 129 ++ GV K+ +D +I S L W RL + +ILR + E++ +VP V ++E Sbjct: 58 DQLVAGVCQYKEALDEVIQSHLKSGWKIQRLSKMDVTILRIALYEMVYVDNVPNRVALNE 117 Query: 130 YVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRS 162 + +A F KF+N +L V+ + E K Sbjct: 118 AIELAKTFSDDQSRKFVNGILSNVNSEIESKND 150 >gi|110597193|ref|ZP_01385482.1| transcription antitermination factor NusB [Chlorobium ferrooxidans DSM 13031] gi|110341384|gb|EAT59849.1| transcription antitermination factor NusB [Chlorobium ferrooxidans DSM 13031] Length = 191 Score = 148 bits (374), Expect = 3e-34, Method: Composition-based stats. Identities = 40/153 (26%), Positives = 67/153 (43%), Gaps = 14/153 (9%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 R R +QALY I+I T D +++F +++ Sbjct: 32 RRQIREKILQALYTIEIRETDIDSAAGWLLTQEILDDANA----------MKFFNLLLKS 81 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135 + + ++ ID I+ T W SR+ +I +ILR + E++ C +P +V I+E + IA Sbjct: 82 IKENREEIDRYIAKH-TFNWDMSRIAIIDKNILRMALAEILYCEDIPPKVSINEAIEIAK 140 Query: 136 DF-FYGDEPKFINAVLDKVSRKEEIKRSGCVSA 167 F KF+N +LD + E+K G V Sbjct: 141 KFTSTDKSSKFVNGILDAIF--NELKAEGKVHK 171 >gi|239978405|ref|ZP_04700929.1| transcription antitermination protein NusB [Streptomyces albus J1074] gi|291450301|ref|ZP_06589691.1| transcription antitermination protein NusB [Streptomyces albus J1074] gi|291353250|gb|EFE80152.1| transcription antitermination protein NusB [Streptomyces albus J1074] Length = 142 Score = 148 bits (374), Expect = 3e-34, Method: Composition-based stats. Identities = 37/147 (25%), Positives = 68/147 (46%), Gaps = 12/147 (8%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 R AR A Q L++ D +++++ + + V E+ ++ G Sbjct: 4 RNTARKRAFQILFEADQRSTDVLTVLADWIRHARSDTRQPPVS--------EYTMELVEG 55 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135 + ++ ID LI+ W+ R+ ++ +ILR G ELI + P V++ E V +A Sbjct: 56 YAEHERRIDELIAQYAV-DWTLDRMPVVDRNILRLGAYELIWVDTTPDAVVLDEAVQLAK 114 Query: 136 DFFYGDEPKFINAVLDKVSRKEEIKRS 162 +F D P F+N +L +R +E+K Sbjct: 115 EFSTDDSPAFVNGLL---ARFKELKPG 138 >gi|239993724|ref|ZP_04714248.1| transcription antitermination protein NusB [Alteromonas macleodii ATCC 27126] Length = 140 Score = 148 bits (374), Expect = 3e-34, Method: Composition-based stats. Identities = 44/146 (30%), Positives = 64/146 (43%), Gaps = 14/146 (9%) Query: 10 LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF 69 +K+S RR AR A+Q +Y + ++ + L + VD+ +F Sbjct: 1 MKVSARR-KARELALQGVYSWQMSHNDIQQV-----------ELALATSNDMQKVDMAYF 48 Query: 70 RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISE 129 + ++ GV +D I L LD I +ILR LEL E VP VII+E Sbjct: 49 QALLRGVAHNASKLDTTIKPYLGR--LPEELDAIEKAILRIATLELTERIDVPYRVIINE 106 Query: 130 YVCIAHDFFYGDEPKFINAVLDKVSR 155 + +A F + KFIN LDK R Sbjct: 107 AIELAKAFGAEESHKFINGALDKAVR 132 >gi|241662317|ref|YP_002980677.1| transcription antitermination protein NusB [Ralstonia pickettii 12D] gi|240864344|gb|ACS62005.1| NusB antitermination factor [Ralstonia pickettii 12D] Length = 155 Score = 148 bits (374), Expect = 3e-34, Method: Composition-based stats. Identities = 35/156 (22%), Positives = 64/156 (41%), Gaps = 15/156 (9%) Query: 1 MTIQDNKKDLKLSHR--RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVE 58 MT +++ K + R AR A+Q LYQ + + + L Sbjct: 1 MTQDNSQAKTKAPAKSARRRARELALQGLYQWLLNRNDPGVVEA-----------HLQDA 49 Query: 59 SVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIEC 118 + D F ++HG + + + + L + L + + L G EL+ C Sbjct: 50 QGFNKADRAHFDALLHGAIREETTLTEAFTPYLDR--PVAELSPVERAALLVGAYELVHC 107 Query: 119 HSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVS 154 +P +V+I+E V + F + K++N VLDK++ Sbjct: 108 VDIPYKVVINEAVELTKTFGGVEGYKYVNGVLDKLA 143 >gi|111024096|ref|YP_707068.1| transcription antitermination protein NusB [Rhodococcus jostii RHA1] gi|119390812|sp|Q0S0M6|NUSB_RHOSR RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|110823626|gb|ABG98910.1| N utilization substance protein B [Rhodococcus jostii RHA1] Length = 169 Score = 148 bits (374), Expect = 3e-34, Method: Composition-based stats. Identities = 36/144 (25%), Positives = 60/144 (41%), Gaps = 9/144 (6%) Query: 11 KLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFR 70 K R AR AV L++ + ++ +E EL + + + Sbjct: 6 KKLGARHKARKRAVDFLFEAEARDLDPVDLATER--------AELSGKDDSVAPVAPYTV 57 Query: 71 VIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEY 130 ++ GV + +D +I S L + W+ RL + +ILR V EL VP V + E Sbjct: 58 TVVTGVAENLDRLDEVIRSHL-QDWTLERLPAVDRAILRIAVWELFHATDVPPVVAVDEA 116 Query: 131 VCIAHDFFYGDEPKFINAVLDKVS 154 V +A + P F+N +L +V Sbjct: 117 VELAKQLSTDESPGFVNGILGQVV 140 >gi|332141882|ref|YP_004427620.1| transcription antitermination protein NusB [Alteromonas macleodii str. 'Deep ecotype'] gi|238693257|sp|B4RVY5|NUSB_ALTMD RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|327551904|gb|AEA98622.1| transcription antitermination protein NusB [Alteromonas macleodii str. 'Deep ecotype'] Length = 140 Score = 147 bits (373), Expect = 3e-34, Method: Composition-based stats. Identities = 44/146 (30%), Positives = 64/146 (43%), Gaps = 14/146 (9%) Query: 10 LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF 69 +K+S RR AR A+Q +Y + ++ + L + VD+ +F Sbjct: 1 MKVSARR-KARELALQGVYSWQMSHNDIQQV-----------ELALATSNDMQKVDMAYF 48 Query: 70 RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISE 129 + ++ GV +D I L LD I +ILR LEL E VP VII+E Sbjct: 49 QALLRGVAHNASKLDATIKPYLGR--LPEELDAIEKAILRIATLELTERIDVPYRVIINE 106 Query: 130 YVCIAHDFFYGDEPKFINAVLDKVSR 155 + +A F + KFIN LDK R Sbjct: 107 AIELAKAFGAEESHKFINGALDKAVR 132 >gi|320536419|ref|ZP_08036456.1| transcription antitermination factor NusB [Treponema phagedenis F0421] gi|320146729|gb|EFW38308.1| transcription antitermination factor NusB [Treponema phagedenis F0421] Length = 136 Score = 147 bits (373), Expect = 3e-34, Method: Composition-based stats. Identities = 40/140 (28%), Positives = 68/140 (48%), Gaps = 10/140 (7%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 R R+ A QAL+ D S E++ ++E + E E +L + +++ G Sbjct: 5 RRRGRILAFQALFAWDFGQSSPEELV-QFEWF---ETKEPVSEEAFL-----FPKMLFLG 55 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135 ++ + ID I + L W F RL+ +I+R GV L+ P ++I E V +A Sbjct: 56 TLEHLEEIDTHIKNNL-HNWDFDRLNKADKAIIRLGVYSLLFQKDTPSAIVIDEAVNLAR 114 Query: 136 DFFYGDEPKFINAVLDKVSR 155 F D KF+NA+LD +++ Sbjct: 115 SFGTDDSFKFVNAILDSIAK 134 >gi|325918406|ref|ZP_08180534.1| transcription antitermination factor NusB [Xanthomonas vesicatoria ATCC 35937] gi|325535368|gb|EGD07236.1| transcription antitermination factor NusB [Xanthomonas vesicatoria ATCC 35937] Length = 156 Score = 147 bits (373), Expect = 3e-34, Method: Composition-based stats. Identities = 33/140 (23%), Positives = 59/140 (42%), Gaps = 13/140 (9%) Query: 25 QALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHID 84 QA+Y I G ++I ++ E + DL +F ++ GV+ + +D Sbjct: 30 QAVYAWQISGGFAKQVIGQFAH-----------EQAHEVADLAYFESLVEGVLTHRAELD 78 Query: 85 LLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPK 144 ++ L +D I ++LR EL+ VP V+I+E + A F Sbjct: 79 TALTPYLDRG--VEEVDAIERAVLRLAAYELLYRQDVPYRVVINEAIETAKRFGSEHGHT 136 Query: 145 FINAVLDKVSRKEEIKRSGC 164 ++N VLD+ + + SG Sbjct: 137 YVNGVLDRAAVEWRKVESGA 156 >gi|310816559|ref|YP_003964523.1| putative N utilization substance protein B [Ketogulonicigenium vulgare Y25] gi|308755294|gb|ADO43223.1| putative N utilization substance protein B [Ketogulonicigenium vulgare Y25] Length = 147 Score = 147 bits (373), Expect = 3e-34, Method: Composition-based stats. Identities = 48/144 (33%), Positives = 78/144 (54%), Gaps = 5/144 (3%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 R ARL AVQAL+Q++ G + T + E+E +RF A + + + D+ FR ++ Sbjct: 2 RSAARLYAVQALFQMEAAGVTVTRVTREFEDFRFGASIDGEE---LVEGDVTLFRTLMQD 58 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135 ++ + ID + L KW +R+D L ++ RA E + P +V+I E++ IA Sbjct: 59 AVNNQAQIDQMTDRALVSKWPIARIDPTLRALFRAAGAEFM-LKETPAKVVIVEFMDIAS 117 Query: 136 DFFYG-DEPKFINAVLDKVSRKEE 158 F EPKF+NAVLD ++R+ Sbjct: 118 AFSADPKEPKFVNAVLDHMAREAN 141 >gi|288941488|ref|YP_003443728.1| NusB antitermination factor [Allochromatium vinosum DSM 180] gi|288896860|gb|ADC62696.1| NusB antitermination factor [Allochromatium vinosum DSM 180] Length = 171 Score = 147 bits (373), Expect = 3e-34, Method: Composition-based stats. Identities = 38/168 (22%), Positives = 69/168 (41%), Gaps = 16/168 (9%) Query: 1 MTIQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYET-----------YRF 49 MT +N + + R +R A ALYQ + G I Sbjct: 1 MTTPENPRPISP---RSQSRRYAALALYQWRLTGDDPMAIKRHLLDDPKWLDAVAASLNG 57 Query: 50 CADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILR 109 +D + + ++E +++GV ID + L S++D + +ILR Sbjct: 58 VSDEDELAAEDRFNFNVELLDELLNGVPTHIDAIDAQLDRFLDR--PISQVDPVELAILR 115 Query: 110 AGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKE 157 G E++ ++P V I+E V + + K++N VLDK++R++ Sbjct: 116 LGAYEILFSDNIPDRVAINEAVELTKLLGAHEGHKYVNGVLDKIARRK 163 >gi|222153656|ref|YP_002562833.1| transcription antitermination protein NusB [Streptococcus uberis 0140J] gi|254772659|sp|B9DVJ4|NUSB_STRU0 RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|222114469|emb|CAR43313.1| N utilization substance protein B homolog (NusB protein) [Streptococcus uberis 0140J] Length = 142 Score = 147 bits (373), Expect = 4e-34, Method: Composition-based stats. Identities = 37/145 (25%), Positives = 63/145 (43%), Gaps = 9/145 (6%) Query: 14 HRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVII 73 + R R A QAL+ ++ G + Y Y +D E D+ + ++ Sbjct: 7 NSRRDLRERAFQALFNMEHGGDFLSASQFAY-DYDKVSDQEHDIP--------AFLLTLV 57 Query: 74 HGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCI 133 +GV++ K +D +I L WS RL + ++LR G+ E+ P V ++E + I Sbjct: 58 NGVVNHKDELDAIIKEHLKAGWSIERLTLTDRTMLRLGLYEIKFFEETPDRVALNEIIEI 117 Query: 134 AHDFFYGDEPKFINAVLDKVSRKEE 158 A + KFIN +L + E Sbjct: 118 AKKYSDETSAKFINGLLSQFVSDSE 142 >gi|85858025|ref|YP_460227.1| transcription termination factor NusB [Syntrophus aciditrophicus SB] gi|119390838|sp|Q2LQK4|NUSB_SYNAS RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|85721116|gb|ABC76059.1| transcription termination factor NusB [Syntrophus aciditrophicus SB] Length = 161 Score = 147 bits (373), Expect = 4e-34, Method: Composition-based stats. Identities = 40/149 (26%), Positives = 67/149 (44%), Gaps = 12/149 (8%) Query: 14 HRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVII 73 +R IAR A+Q LY ++++ E I Y + + +D + ++I Sbjct: 13 RQRRIAREIALQVLYSLEVVEMEAGEAIELYWAH---YEAPMDA--------RPFSSLLI 61 Query: 74 HGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCI 133 G + ID LI C + WS +R+ + SILR V EL C +P +V ++E + + Sbjct: 62 EGAWKHRDQIDSLIGGC-SANWSIARMSKVDKSILRMAVFELCFCEDIPPKVTMNEAIDL 120 Query: 134 AHDFFYGDEPKFINAVLDKVSRKEEIKRS 162 + + FIN +LD + K K Sbjct: 121 GKVYGSENSGSFINGILDALYAKIHKKND 149 >gi|30410822|ref|NP_660779.2| transcription antitermination protein NusB [Buchnera aphidicola str. Sg (Schizaphis graminum)] Length = 142 Score = 147 bits (373), Expect = 4e-34, Method: Composition-based stats. Identities = 42/141 (29%), Positives = 64/141 (45%), Gaps = 13/141 (9%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 R AR A+Q LY +I + + E+ E ++D+ +F +I G Sbjct: 12 RRKARACALQMLYSWEISQNNIKDSAIEFLK-----------EKNKKNIDIIYFYELIIG 60 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135 + + ID L+ L+ S L I +ILR EL + +P +V I+E + +A Sbjct: 61 ITYNCRSIDDLMKPYLSR--SLKELGQIEKAILRISFYELYKRKDIPYKVSINEGIELAK 118 Query: 136 DFFYGDEPKFINAVLDKVSRK 156 F D KFIN VLDK + K Sbjct: 119 LFGSEDSHKFINGVLDKAALK 139 >gi|219681813|ref|YP_002468199.1| transcription antitermination protein NusB [Buchnera aphidicola str. 5A (Acyrthosiphon pisum)] gi|219682368|ref|YP_002468752.1| transcription antitermination protein NusB [Buchnera aphidicola str. Tuc7 (Acyrthosiphon pisum)] gi|257471515|ref|ZP_05635514.1| transcription antitermination protein NusB [Buchnera aphidicola str. LSR1 (Acyrthosiphon pisum)] gi|254772618|sp|B8D9P0|NUSB_BUCA5 RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|254772619|sp|B8D7Z2|NUSB_BUCAT RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|219622101|gb|ACL30257.1| transcription antitermination protein NusB [Buchnera aphidicola str. Tuc7 (Acyrthosiphon pisum)] gi|219624656|gb|ACL30811.1| transcription antitermination protein NusB [Buchnera aphidicola str. 5A (Acyrthosiphon pisum)] gi|311086189|gb|ADP66271.1| transcription antitermination protein NusB [Buchnera aphidicola str. LL01 (Acyrthosiphon pisum)] gi|311087353|gb|ADP67433.1| transcription antitermination protein NusB [Buchnera aphidicola str. JF99 (Acyrthosiphon pisum)] Length = 143 Score = 147 bits (373), Expect = 4e-34, Method: Composition-based stats. Identities = 44/143 (30%), Positives = 66/143 (46%), Gaps = 14/143 (9%) Query: 10 LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF 69 +K S RR AR A+Q LY +I + E + E ++D+ +F Sbjct: 1 MKPSFRR-KARACALQVLYSWEISHNNIKESAIYFLK-----------EKNKKNIDIVYF 48 Query: 70 RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISE 129 +I G+ ++ID L+ L S L I +ILR EL + + +P +V I+E Sbjct: 49 YELIIGITYDCKNIDNLMKPYLFR--SLKELGHIERAILRISFYELHKRNDIPYKVSINE 106 Query: 130 YVCIAHDFFYGDEPKFINAVLDK 152 + +A F D KFIN VLDK Sbjct: 107 GIELAKLFGSEDSHKFINGVLDK 129 >gi|294628337|ref|ZP_06706897.1| transcription antitermination factor NusB [Streptomyces sp. e14] gi|292831670|gb|EFF90019.1| transcription antitermination factor NusB [Streptomyces sp. e14] Length = 147 Score = 147 bits (373), Expect = 4e-34, Method: Composition-based stats. Identities = 36/147 (24%), Positives = 66/147 (44%), Gaps = 12/147 (8%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 R AR A Q L++ D G +++++ + V E+ ++ G Sbjct: 4 RNTARKRAFQILFEGDQRGVGVLTVLADWVRLSRSDTRQPPVS--------EYTMQLVEG 55 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135 + ID L++ W+ R+ ++ +ILR G ELI P V++ E V +A Sbjct: 56 YAEHATRIDELLAQYAV-GWTLDRMPVVDRNILRLGAYELIWVDETPDAVVLDEMVQLAK 114 Query: 136 DFFYGDEPKFINAVLDKVSRKEEIKRS 162 +F + P F+N +L ++ +E+K S Sbjct: 115 EFSTDESPSFVNGLLGRL---KELKPS 138 >gi|58583474|ref|YP_202490.1| transcription antitermination protein NusB [Xanthomonas oryzae pv. oryzae KACC10331] gi|84625287|ref|YP_452659.1| transcription antitermination protein NusB [Xanthomonas oryzae pv. oryzae MAFF 311018] gi|188575269|ref|YP_001912198.1| transcription antitermination protein NusB [Xanthomonas oryzae pv. oryzae PXO99A] gi|75434146|sp|Q5GW16|NUSB_XANOR RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|119390848|sp|Q2NZ92|NUSB_XANOM RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|238689535|sp|B2SNW5|NUSB_XANOP RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|58428068|gb|AAW77105.1| transcription termination factor NusB [Xanthomonas oryzae pv. oryzae KACC10331] gi|84369227|dbj|BAE70385.1| N utilization substance protein B homolog [Xanthomonas oryzae pv. oryzae MAFF 311018] gi|188519721|gb|ACD57666.1| transcription antitermination factor NusB [Xanthomonas oryzae pv. oryzae PXO99A] Length = 156 Score = 147 bits (373), Expect = 4e-34, Method: Composition-based stats. Identities = 33/140 (23%), Positives = 60/140 (42%), Gaps = 13/140 (9%) Query: 25 QALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHID 84 QA+Y I G ++I+++ E + DL +F ++ GV+ + +D Sbjct: 30 QAVYAWQISGGFAKQVIAQFAH-----------EQAHEVADLAYFENLVEGVLTNRAELD 78 Query: 85 LLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPK 144 ++ L +D I ++LR EL+ VP V+I+E + A F Sbjct: 79 TALTPYLDRG--VEEVDAIERAVLRLAAYELLYRQDVPYRVVINEAIETAKRFGSEHGHT 136 Query: 145 FINAVLDKVSRKEEIKRSGC 164 ++N VLD+ + + SG Sbjct: 137 YVNGVLDRAAVEWRKVESGA 156 >gi|319794181|ref|YP_004155821.1| nusb antitermination factor [Variovorax paradoxus EPS] gi|315596644|gb|ADU37710.1| NusB antitermination factor [Variovorax paradoxus EPS] Length = 178 Score = 147 bits (373), Expect = 4e-34, Method: Composition-based stats. Identities = 44/170 (25%), Positives = 75/170 (44%), Gaps = 17/170 (10%) Query: 1 MTIQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESV 60 +T +K S+ R AR A+QALYQ + T+I D + Sbjct: 20 LTSTGARKASAKSN-RSRAREFALQALYQHLVGRNDPTDI-----------DHFTRDLAG 67 Query: 61 YLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHS 120 + D + ++HG +D + +D LI L K F + I +++ GV E C Sbjct: 68 FHKADAAHYDALLHGSIDNAEQLDALIRPLLDRK--FEEISPIEHAVMWIGVYEFQNCPD 125 Query: 121 VPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVS---RKEEIKRSGCVSA 167 VP V+++E + +A +F D K++NAVL+ ++ R E++ Sbjct: 126 VPWRVVLNECIELAKEFGGTDGHKYVNAVLNGLAPQLRPLEVEADRASGK 175 >gi|311086765|gb|ADP66846.1| transcription antitermination protein NusB [Buchnera aphidicola str. TLW03 (Acyrthosiphon pisum)] Length = 143 Score = 147 bits (373), Expect = 4e-34, Method: Composition-based stats. Identities = 44/143 (30%), Positives = 66/143 (46%), Gaps = 14/143 (9%) Query: 10 LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF 69 +K S RR AR A+Q LY +I + E + E ++D+ +F Sbjct: 1 MKPSFRR-KARACALQVLYSWEISHNNIKESAIYFLK-----------EKNKKNIDIVYF 48 Query: 70 RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISE 129 +I G+ ++ID L+ L S L I +ILR EL + + +P +V I+E Sbjct: 49 YELIIGITYDCKNIDNLMKPYLFR--SLKELGHIERAILRISFYELHKRNDIPYKVSINE 106 Query: 130 YVCIAHDFFYGDEPKFINAVLDK 152 + +A F D KFIN VLDK Sbjct: 107 GIELAKLFGSEDSHKFINGVLDK 129 >gi|317122010|ref|YP_004102013.1| NusB antitermination factor [Thermaerobacter marianensis DSM 12885] gi|315591990|gb|ADU51286.1| NusB antitermination factor [Thermaerobacter marianensis DSM 12885] Length = 237 Score = 147 bits (372), Expect = 4e-34, Method: Composition-based stats. Identities = 39/152 (25%), Positives = 63/152 (41%), Gaps = 15/152 (9%) Query: 21 LAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRK 80 A+Q L+Q + G + A E D L + + GV R+ Sbjct: 18 EIALQVLFQWEAAGNPLEAGLE-------WAAGEYDPGEEV----LAFAAELCRGVTRRR 66 Query: 81 QHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIE--CHSVPVEVIISEYVCIAHDFF 138 ID LI+ W RL + ++LR G+ EL+ VP V I+E V +A + Sbjct: 67 LDIDGLIARY-ARDWDLERLARVDRNVLRLGIYELLYAGRPDVPPPVAINEAVELAKRYS 125 Query: 139 YGDEPKFINAVLDKVSRKEEIKR-SGCVSAIT 169 D +F+N +L +++R + SG V+ Sbjct: 126 SEDAARFVNGILGQLARDRGLATGSGGVAPAA 157 >gi|138895967|ref|YP_001126420.1| transcription antitermination protein NusB [Geobacillus thermodenitrificans NG80-2] gi|166215689|sp|A4IQS1|NUSB_GEOTN RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|134267480|gb|ABO67675.1| N utilization substance protein B [Geobacillus thermodenitrificans NG80-2] Length = 130 Score = 147 bits (372), Expect = 4e-34, Method: Composition-based stats. Identities = 43/139 (30%), Positives = 61/139 (43%), Gaps = 16/139 (11%) Query: 15 RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74 +R AR A+QAL+QID+ E I E+D + R ++ Sbjct: 2 KRHEAREKALQALFQIDVGHIPPDEAIG-----NVTGSGEVD----------PFLRQLVF 46 Query: 75 GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134 V++ + ID L+ S L EKW R+ + ILR E+ VPV V + E V +A Sbjct: 47 DVIEHRAEIDELLRSNL-EKWKLERVANVDRVILRMATYEMKYVDDVPVSVSLDEAVELA 105 Query: 135 HDFFYGDEPKFINAVLDKV 153 F F+N VL KV Sbjct: 106 KKFGDWKSGSFVNGVLSKV 124 >gi|119356339|ref|YP_910983.1| NusB antitermination factor [Chlorobium phaeobacteroides DSM 266] gi|166215679|sp|A1BDT2|NUSB_CHLPD RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|119353688|gb|ABL64559.1| NusB antitermination factor [Chlorobium phaeobacteroides DSM 266] Length = 165 Score = 147 bits (372), Expect = 4e-34, Method: Composition-based stats. Identities = 38/153 (24%), Positives = 68/153 (44%), Gaps = 14/153 (9%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 R R +QALY +++ + T D +++F +++ Sbjct: 5 RRQIREKILQALYTLELRDTDIESAANWLLTKEIQEDPNA----------MKFFNLLLKN 54 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135 + + ++ ID I+ T W SR+ +I +ILR + EL+ C +P +V I+E + IA Sbjct: 55 IKEHREEIDQYIARH-TFNWDMSRIAIIDKNILRMALAELLYCEDIPPKVSINEAIEIAK 113 Query: 136 DF-FYGDEPKFINAVLDKVSRKEEIKRSGCVSA 167 F KF+N +LD + E+K G + Sbjct: 114 KFSSTDKSSKFVNGILDAIF--NELKAEGKIHK 144 >gi|302561734|ref|ZP_07314076.1| transcription antitermination factor NusB [Streptomyces griseoflavus Tu4000] gi|302479352|gb|EFL42445.1| transcription antitermination factor NusB [Streptomyces griseoflavus Tu4000] Length = 143 Score = 147 bits (372), Expect = 4e-34, Method: Composition-based stats. Identities = 37/147 (25%), Positives = 68/147 (46%), Gaps = 12/147 (8%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 R AR A Q +++ D G +++++ + + V E+ ++ G Sbjct: 4 RNTARKRAFQIIFEGDQRGAEVLTVLADWIRHARSDTRQPPVS--------EYTMQLVEG 55 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135 + + ID LI + W+ R+ ++ SILR G ELI P V++ E V +A Sbjct: 56 YAEHAKRIDELIGQY-SVGWTLDRMPVVDRSILRLGAYELIWVDETPDAVVLDEMVQLAK 114 Query: 136 DFFYGDEPKFINAVLDKVSRKEEIKRS 162 +F + P F+N +L ++ +E+K S Sbjct: 115 EFSTDESPSFVNGLLGRL---KELKPS 138 >gi|119502844|ref|ZP_01624929.1| transcription antitermination protein NusB [marine gamma proteobacterium HTCC2080] gi|119461190|gb|EAW42280.1| transcription antitermination protein NusB [marine gamma proteobacterium HTCC2080] Length = 148 Score = 147 bits (372), Expect = 4e-34, Method: Composition-based stats. Identities = 42/134 (31%), Positives = 66/134 (49%), Gaps = 13/134 (9%) Query: 22 AAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQ 81 A+Q LYQ + + EI +E+ +++ + HVD E++R ++ GV+ Sbjct: 17 FALQGLYQWSMTRANLAEIEAEFR-----------IDNDFSHVDGEYYRSLLTGVVQDAG 65 Query: 82 HIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGD 141 +D L LD + ++LR G EL E VP V+I+E V +A F D Sbjct: 66 DLDSSFEQLLDR--PLDELDPVERALLRLGTFELKERIDVPYRVVINESVALAKKFGATD 123 Query: 142 EPKFINAVLDKVSR 155 ++IN VLDKV+R Sbjct: 124 SYRYINGVLDKVAR 137 >gi|297198328|ref|ZP_06915725.1| transcription antitermination factor NusB [Streptomyces sviceus ATCC 29083] gi|197714379|gb|EDY58413.1| transcription antitermination factor NusB [Streptomyces sviceus ATCC 29083] Length = 144 Score = 147 bits (372), Expect = 4e-34, Method: Composition-based stats. Identities = 34/138 (24%), Positives = 63/138 (45%), Gaps = 9/138 (6%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 R AR A Q L++ D +++++ + + V E+ ++ G Sbjct: 4 RNTARKRAFQILFEGDQRDADVLTVLADWIRHSREDTRQPPVS--------EYTMQLVEG 55 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135 + Q ID LI+ + W+ R+ ++ +ILR G ELI P V++ E V +A Sbjct: 56 YAEHAQRIDELIAQY-SVGWTLDRMPVVDRNILRLGAYELIWADETPDAVVLDEMVQLAK 114 Query: 136 DFFYGDEPKFINAVLDKV 153 +F + P F+N +L ++ Sbjct: 115 EFSTDESPSFVNGLLGRL 132 >gi|158522086|ref|YP_001529956.1| NusB antitermination factor [Desulfococcus oleovorans Hxd3] gi|226738897|sp|A8ZTU6|NUSB_DESOH RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|158510912|gb|ABW67879.1| NusB antitermination factor [Desulfococcus oleovorans Hxd3] Length = 154 Score = 147 bits (372), Expect = 5e-34, Method: Composition-based stats. Identities = 31/143 (21%), Positives = 64/143 (44%), Gaps = 9/143 (6%) Query: 14 HRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVII 73 R +R A+Q L+ D+ + + E + + F + Sbjct: 2 ASRRRSRELALQFLFSYDLNAAGAGDFDAWMEDFC--------ARFNLSEKNFPHFFTLA 53 Query: 74 HGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCI 133 GV +R + ++ L++ +E W SR+ + +++R + E++ C VP V I+E + I Sbjct: 54 QGVKNRWEKLNDLLAES-SEHWKLSRMSGVDRNVMRIAIFEMLYCDDVPPRVAINEAIEI 112 Query: 134 AHDFFYGDEPKFINAVLDKVSRK 156 + + FIN VLD+++++ Sbjct: 113 GKKYGTDESGAFINGVLDRINKE 135 >gi|116327424|ref|YP_797144.1| transcription antitermination protein NusB [Leptospira borgpetersenii serovar Hardjo-bovis L550] gi|116331982|ref|YP_801700.1| transcription antitermination protein NusB [Leptospira borgpetersenii serovar Hardjo-bovis JB197] gi|122280285|sp|Q04Q78|NUSB_LEPBJ RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|122284775|sp|Q054N4|NUSB_LEPBL RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|116120168|gb|ABJ78211.1| Transcription antitermination protein [Leptospira borgpetersenii serovar Hardjo-bovis L550] gi|116125671|gb|ABJ76942.1| Transcription antitermination protein [Leptospira borgpetersenii serovar Hardjo-bovis JB197] Length = 138 Score = 147 bits (372), Expect = 5e-34, Method: Composition-based stats. Identities = 42/148 (28%), Positives = 74/148 (50%), Gaps = 13/148 (8%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 R +R AV ALYQ+++ G E++ ++ Y + E + ++ I++G Sbjct: 4 RRTSREIAVMALYQLELTGPPLKEVLK-FKWYDKKTEPE----------ERDFAVSIVNG 52 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135 V+ ++ ID LI ++ W FSR+ ++ +ILR V L+ VP V I E V + Sbjct: 53 VVKNQEQIDTLIKKY-SKNWDFSRISIVNKAILRLSVFALLYSWEVPKNVTIDEAVELTK 111 Query: 136 DFFYGDEPKFINAVLDKVSRKEEIKRSG 163 +F + +F+N +LD + + E K G Sbjct: 112 EFESEESARFVNGILDAILK-NETKSDG 138 >gi|24213164|ref|NP_710645.1| transcription antitermination protein NusB [Leptospira interrogans serovar Lai str. 56601] gi|32171656|sp|Q8F8T8|NUSB_LEPIN RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|61214188|sp|Q72V97|NUSB_LEPIC RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|24193877|gb|AAN47663.1| transcription antitermination protein NusB [Leptospira interrogans serovar Lai str. 56601] Length = 138 Score = 147 bits (372), Expect = 5e-34, Method: Composition-based stats. Identities = 42/148 (28%), Positives = 74/148 (50%), Gaps = 13/148 (8%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 R +R AV ALYQ+++ E++ ++ Y + E + ++ I++G Sbjct: 4 RRTSREIAVMALYQLELTQPPLKEVLK-FKWYDKKTEPE----------ERDFAVSIVNG 52 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135 V+ ++ ID LI ++ W FSR+ ++ +ILR + L+ VP V I E V + Sbjct: 53 VVKNQEQIDTLIKKY-SKNWDFSRISIVNKAILRLSIYALLYTWEVPKNVTIDEAVELTK 111 Query: 136 DFFYGDEPKFINAVLDKVSRKEEIKRSG 163 +F + +F+N VLD + + EIK G Sbjct: 112 EFESEESARFVNGVLDAILK-NEIKSDG 138 >gi|289663670|ref|ZP_06485251.1| transcription antitermination protein NusB [Xanthomonas campestris pv. vasculorum NCPPB702] gi|289671050|ref|ZP_06492125.1| transcription antitermination protein NusB [Xanthomonas campestris pv. musacearum NCPPB4381] Length = 156 Score = 147 bits (372), Expect = 5e-34, Method: Composition-based stats. Identities = 33/140 (23%), Positives = 59/140 (42%), Gaps = 13/140 (9%) Query: 25 QALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHID 84 QA+Y I G ++I ++ E + DL +F ++ GV+ + +D Sbjct: 30 QAVYAWQISGGFAKQVIGQFAH-----------EQAHEVADLAYFENLVEGVLSNRAELD 78 Query: 85 LLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPK 144 ++ L +D I ++LR EL+ VP V+I+E + A F Sbjct: 79 TALTPYLDRG--VEEVDAIERAVLRLAAYELLYRQDVPYRVVINEAIETAKRFGSEHGHT 136 Query: 145 FINAVLDKVSRKEEIKRSGC 164 ++N VLD+ + + SG Sbjct: 137 YVNGVLDRAAVEWRKVESGA 156 >gi|296133218|ref|YP_003640465.1| NusB antitermination factor [Thermincola sp. JR] gi|296031796|gb|ADG82564.1| NusB antitermination factor [Thermincola potens JR] Length = 142 Score = 147 bits (372), Expect = 5e-34, Method: Composition-based stats. Identities = 35/144 (24%), Positives = 68/144 (47%), Gaps = 14/144 (9%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISE-YETYRFCADTELDVESVYLHVDLEWFRVIIH 74 R AR AA+Q L+QI++ G + + + + + ++ R ++ Sbjct: 3 RRKAREAALQVLFQIEMAGVEEEKAYEYIFSEFNIGENAQ------------KFCRELVQ 50 Query: 75 GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134 G + + +ID +I ++ +W R+ + +I+R + E++ VP V I+E + + Sbjct: 51 GTLRNRAYIDDIIRE-VSNEWDLYRMANVDRNIIRMALYEMLFREDVPKNVAINEAIELG 109 Query: 135 HDFFYGDEPKFINAVLDKVSRKEE 158 DF D KFIN +L V++ E Sbjct: 110 KDFSTADSGKFINGILGYVAKNME 133 >gi|325290021|ref|YP_004266202.1| NusB antitermination factor [Syntrophobotulus glycolicus DSM 8271] gi|324965422|gb|ADY56201.1| NusB antitermination factor [Syntrophobotulus glycolicus DSM 8271] Length = 146 Score = 147 bits (372), Expect = 5e-34, Method: Composition-based stats. Identities = 38/145 (26%), Positives = 70/145 (48%), Gaps = 10/145 (6%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 R +AR A++ LYQID+ G EI + + A E + + +I G Sbjct: 3 RRLARETALKVLYQIDMTG----EISEMDKNIEYWA-----GEFNLPEKHQPFTKQLIEG 53 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135 + +K+ ID +I +W+ R+ ++ +++R E++ + P V ++E + +A Sbjct: 54 TLSKKEEIDHMIGQN-AHEWALDRMSVVDRNLMRLASYEMLYLRNTPQRVSLNEAIELAK 112 Query: 136 DFFYGDEPKFINAVLDKVSRKEEIK 160 F D KFIN +LD + +EE + Sbjct: 113 KFGGDDSAKFINGILDNLMTQEEKE 137 >gi|295695401|ref|YP_003588639.1| NusB antitermination factor [Bacillus tusciae DSM 2912] gi|295411003|gb|ADG05495.1| NusB antitermination factor [Bacillus tusciae DSM 2912] Length = 148 Score = 147 bits (372), Expect = 5e-34, Method: Composition-based stats. Identities = 35/147 (23%), Positives = 70/147 (47%), Gaps = 5/147 (3%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 R AR +QAL +D+ G E + + R + E D D ++ R ++ G Sbjct: 3 RRAAREKVLQALVAVDLGGTDAEEALEQVWRLRGDEEAEGDPSPE----DADFARGLLFG 58 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135 ++ + +D ++ + + W R+ + ++LR V EL+ + PV V+++E V +A Sbjct: 59 TLEEGRRVDGVLRTY-STGWDLDRMASVDRNVLRLAVYELLHVPATPVSVVMNEAVELAK 117 Query: 136 DFFYGDEPKFINAVLDKVSRKEEIKRS 162 + + +F+N VL ++ E R+ Sbjct: 118 RYSTEESGRFVNGVLARIVAHLEELRT 144 >gi|91788748|ref|YP_549700.1| transcription antitermination protein NusB [Polaromonas sp. JS666] gi|119390795|sp|Q129J0|NUSB_POLSJ RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|91697973|gb|ABE44802.1| NusB antitermination factor [Polaromonas sp. JS666] Length = 187 Score = 147 bits (372), Expect = 5e-34, Method: Composition-based stats. Identities = 38/154 (24%), Positives = 64/154 (41%), Gaps = 14/154 (9%) Query: 1 MTIQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESV 60 +T KK S R AR A+QALYQ + I D Sbjct: 34 LTDTGVKKAADKSA-RTRAREFALQALYQHLVGRNDADSI-----------DAFTRDLVG 81 Query: 61 YLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHS 120 + D + ++HG ++ +D +I+ L + + + ++L G E +C Sbjct: 82 FHKADSAHYDALLHGCIEGASALDAVITPLLDR--PMAEISPVEHAVLWMGAYEFRQCLD 139 Query: 121 VPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVS 154 VP V+I+E + +A F D K++N VL K++ Sbjct: 140 VPYRVVINECIELAKAFGGTDGHKYVNGVLHKMA 173 >gi|225174889|ref|ZP_03728886.1| NusB antitermination factor [Dethiobacter alkaliphilus AHT 1] gi|225169529|gb|EEG78326.1| NusB antitermination factor [Dethiobacter alkaliphilus AHT 1] Length = 138 Score = 147 bits (371), Expect = 5e-34, Method: Composition-based stats. Identities = 39/146 (26%), Positives = 67/146 (45%), Gaps = 12/146 (8%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 R +AR A + L+Q DI IS+ E+ +E+ R ++ G Sbjct: 3 RRLAREIAFKTLFQYDIGKNEVEPTISQLIE-----------ENGLEGAGVEFSRQLVLG 51 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135 + + ID ++ L +KW RL + ++LR E++ +P V I+E + ++ Sbjct: 52 TLKNLEAIDKALAGYL-QKWELGRLAAVDRNVLRLAAFEILYREDIPAAVTINEALELSK 110 Query: 136 DFFYGDEPKFINAVLDKVSRKEEIKR 161 F + KF+N VLDK++R E K Sbjct: 111 AFHSEEAAKFLNGVLDKLARHHEGKE 136 >gi|29654709|ref|NP_820401.1| transcription antitermination protein NusB [Coxiella burnetii RSA 493] gi|161829811|ref|YP_001597256.1| transcription antitermination protein NusB [Coxiella burnetii RSA 331] gi|212212219|ref|YP_002303155.1| transcription antitermination protein NusB [Coxiella burnetii CbuG_Q212] gi|39931899|sp|Q83BT5|NUSB_COXBU RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|189035886|sp|A9KBN6|NUSB_COXBN RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|189035887|sp|A9N8T6|NUSB_COXBR RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|238055350|sp|B6IZ82|NUSB_COXB2 RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|29541977|gb|AAO90915.1| N utilization substance protein B [Coxiella burnetii RSA 493] gi|161761678|gb|ABX77320.1| transcription antitermination factor NusB [Coxiella burnetii RSA 331] gi|212010629|gb|ACJ18010.1| N utilization substance protein B [Coxiella burnetii CbuG_Q212] Length = 138 Score = 147 bits (371), Expect = 5e-34, Method: Composition-based stats. Identities = 40/141 (28%), Positives = 69/141 (48%), Gaps = 13/141 (9%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 R AR A+QALYQ +IS++ +DT D+ +F+ ++ G Sbjct: 6 RHNARRYALQALYQWFFCETKPDALISQFMEEHDLSDT-----------DVAYFKEVVTG 54 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135 + ID L+++ L K S L+ + S+LR + EL+ VP +V+I E + + Sbjct: 55 TIQHVAIIDELMTAHLDRK--ISALNPVELSVLRLSIYELLHRKEVPYKVVIDEALELVK 112 Query: 136 DFFYGDEPKFINAVLDKVSRK 156 +F K++NA+LD +S + Sbjct: 113 EFGAEAGHKYVNAILDVLSSE 133 >gi|323359977|ref|YP_004226373.1| transcription termination factor [Microbacterium testaceum StLB037] gi|323276348|dbj|BAJ76493.1| transcription termination factor [Microbacterium testaceum StLB037] Length = 136 Score = 147 bits (371), Expect = 6e-34, Method: Composition-based stats. Identities = 37/140 (26%), Positives = 66/140 (47%), Gaps = 9/140 (6%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 R AR A+ L+Q D+ G +++ A+ + + R I+ G Sbjct: 4 RTKARKRALDILFQADVRGEELPIMLA--------AEAKRAASEPDRQASWLYARDIVDG 55 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135 V+D + ID I++ ++ WS R+ + ++LR G E++ VP V I E V +A Sbjct: 56 VIDNRDAIDEQITTF-SKDWSLQRMPAVDRALLRIGTWEILYNDEVPTAVAIDEAVELAK 114 Query: 136 DFFYGDEPKFINAVLDKVSR 155 +F D F++ VL +++R Sbjct: 115 EFSTDDSGSFVHGVLARIAR 134 >gi|15617061|ref|NP_240274.1| transcription antitermination protein NusB [Buchnera aphidicola str. APS (Acyrthosiphon pisum)] gi|11134003|sp|P57535|NUSB_BUCAI RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|25299794|pir||H84983 N utilization substance protein B [imported] - Buchnera sp. (strain APS) gi|10039126|dbj|BAB13160.1| N utilization substance protein B [Buchnera aphidicola str. APS (Acyrthosiphon pisum)] Length = 143 Score = 147 bits (371), Expect = 6e-34, Method: Composition-based stats. Identities = 44/143 (30%), Positives = 66/143 (46%), Gaps = 14/143 (9%) Query: 10 LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF 69 +K S RR AR A+Q LY +I + E + E ++D+ +F Sbjct: 1 MKPSFRR-KARACALQVLYSWEISHNNIKESAIYFLK-----------EKNKKNIDIVYF 48 Query: 70 RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISE 129 +I G+ ++ID L+ L S L I +ILR EL + + +P +V I+E Sbjct: 49 YELIIGITYDCKNIDNLMKPYLFR--SLKELGHIERAILRISFYELHKRNDIPYKVSINE 106 Query: 130 YVCIAHDFFYGDEPKFINAVLDK 152 + +A F D KFIN VLDK Sbjct: 107 GIELAKLFGSEDSHKFINGVLDK 129 >gi|254383581|ref|ZP_04998931.1| transcription antitermination protein NusB [Streptomyces sp. Mg1] gi|194342476|gb|EDX23442.1| transcription antitermination protein NusB [Streptomyces sp. Mg1] Length = 144 Score = 147 bits (371), Expect = 6e-34, Method: Composition-based stats. Identities = 38/147 (25%), Positives = 67/147 (45%), Gaps = 12/147 (8%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 R AR A Q L++ D G ++++++ + D + V + ++ G Sbjct: 4 RSNARKRAFQILFEADQRGVPVRDVLADWIRHARSDDRQPPVS--------AFTMDLVEG 55 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135 D+ ID LI + W R+ ++ +I+R G ELI P V I E V +A Sbjct: 56 YADKVNRIDDLIITYAV-DWDLDRMPVVDRNIVRLGAYELIWVDDTPDAVAIDEAVQLAK 114 Query: 136 DFFYGDEPKFINAVLDKVSRKEEIKRS 162 +F + P F+N +L +R +++K S Sbjct: 115 EFSTDESPSFVNGLL---ARFKDLKPS 138 >gi|169629920|ref|YP_001703569.1| transcription antitermination protein NusB [Mycobacterium abscessus ATCC 19977] gi|169241887|emb|CAM62915.1| Probable transcription antitermination factor NusB [Mycobacterium abscessus] Length = 173 Score = 147 bits (371), Expect = 6e-34, Method: Composition-based stats. Identities = 41/138 (29%), Positives = 66/138 (47%), Gaps = 9/138 (6%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 R AR AV L++ + + + E R A ++ D++ + + + HG Sbjct: 28 RRKARKRAVDLLFEAEAREMTAAGVADE---RRALAASKPDIDPLN-----PYTVSVAHG 79 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135 V + HID LISS L + W+ +RL + +ILR V EL+ VP V + E V +A Sbjct: 80 VTEHAAHIDELISSHL-QGWTLARLPAVDRAILRVAVWELLHAQDVPEVVAVDEAVELAK 138 Query: 136 DFFYGDEPKFINAVLDKV 153 + P F+N VL ++ Sbjct: 139 QLSTDESPAFVNGVLGQL 156 >gi|253699860|ref|YP_003021049.1| NusB antitermination factor [Geobacter sp. M21] gi|259514841|sp|C6E3M6|NUSB_GEOSM RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|251774710|gb|ACT17291.1| NusB antitermination factor [Geobacter sp. M21] Length = 145 Score = 147 bits (371), Expect = 7e-34, Method: Composition-based stats. Identities = 37/140 (26%), Positives = 67/140 (47%), Gaps = 6/140 (4%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEY-ETYRFCADTELDVESVYLHVDLEWFRVIIH 74 R R A+QALY D++ + E++ + L V S + +++ Sbjct: 4 RREGRELALQALYSKDLVLQDANSTLKRITESFSEGEEPTLSVNSKAY----AFASELVN 59 Query: 75 GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134 GV+ Q ID I+ ++ WS +R+ + +ILR V EL+ +P V ++E + +A Sbjct: 60 GVVSNLQQIDSRIAEK-SKHWSMARMARVDLNILRLAVFELLYRPDIPKNVTMNEAIEVA 118 Query: 135 HDFFYGDEPKFINAVLDKVS 154 F D F+N +LD+++ Sbjct: 119 KKFGADDSASFVNGILDEIA 138 >gi|253682288|ref|ZP_04863085.1| transcription antitermination factor NusB [Clostridium botulinum D str. 1873] gi|253562000|gb|EES91452.1| transcription antitermination factor NusB [Clostridium botulinum D str. 1873] Length = 135 Score = 147 bits (371), Expect = 7e-34, Method: Composition-based stats. Identities = 40/141 (28%), Positives = 67/141 (47%), Gaps = 10/141 (7%) Query: 15 RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74 R +R A++ L+++ I EII ++ + ++ VD E+ II Sbjct: 2 NRRKSREIAMKLLFEMSINKEELKEIIHNFKE---------NTDTSLKDVDFEYINKIIQ 52 Query: 75 GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134 GV D + ID I LT+ W +RL I +ILR E+I +P +V ++E + +A Sbjct: 53 GVQDNIETIDSKIEENLTK-WKLNRLSKIDLTILRISTYEIIFVEDIPEKVAVNEGIELA 111 Query: 135 HDFFYGDEPKFINAVLDKVSR 155 + + P FIN VL + + Sbjct: 112 KKYSAENSPAFINGVLGNMMK 132 >gi|226949184|ref|YP_002804275.1| N utilization substance protein B [Clostridium botulinum A2 str. Kyoto] gi|254772625|sp|C1FPB3|NUSB_CLOBJ RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|226844538|gb|ACO87204.1| N utilization substance protein B [Clostridium botulinum A2 str. Kyoto] Length = 143 Score = 147 bits (371), Expect = 7e-34, Method: Composition-based stats. Identities = 44/142 (30%), Positives = 68/142 (47%), Gaps = 4/142 (2%) Query: 15 RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCAD--TELDVESVYLH-VDLEWFRV 71 R +R A++ L+Q + G + E + + R + E D ESV L VD+++ + Sbjct: 2 NRRKSREVAMRLLFQTTLNGENLEEALENLKDVRESEEITKEKDYESVDLKDVDIDYVKR 61 Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131 II G+ + K+ ID I L + W RL + SILR EL +P V I+E + Sbjct: 62 IIKGIEENKEEIDEKIKGNL-KNWKIERLSKVDLSILRLCTYELKFEEDIPNRVSINEAI 120 Query: 132 CIAHDFFYGDEPKFINAVLDKV 153 +A + FIN VL K+ Sbjct: 121 ELAKKYSGEKSATFINGVLGKM 142 >gi|294627702|ref|ZP_06706284.1| transcription antitermination protein NusB [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] gi|294667130|ref|ZP_06732355.1| transcription antitermination protein NusB [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] gi|292598054|gb|EFF42209.1| transcription antitermination protein NusB [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] gi|292603140|gb|EFF46566.1| transcription antitermination protein NusB [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] Length = 156 Score = 146 bits (370), Expect = 7e-34, Method: Composition-based stats. Identities = 34/140 (24%), Positives = 61/140 (43%), Gaps = 13/140 (9%) Query: 25 QALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHID 84 QA+Y I G ++I+++ E + DL +F ++ GV+ + +D Sbjct: 30 QAVYAWQISGGFAKQVIAQFAH-----------EQAHEVADLAYFENLVEGVLSNRAELD 78 Query: 85 LLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPK 144 ++ L S +D I ++LR EL+ VP V+I+E + A F Sbjct: 79 TALTPYLDR--SVEEVDAIERAVLRLAAYELLYRQDVPYRVVINEAIETAKRFGSEHGHT 136 Query: 145 FINAVLDKVSRKEEIKRSGC 164 ++N VLD+ + + SG Sbjct: 137 YVNGVLDRAAVEWRKVESGA 156 >gi|197119391|ref|YP_002139818.1| transcription antitermination factor NusB [Geobacter bemidjiensis Bem] gi|238690857|sp|B5E853|NUSB_GEOBB RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|197088751|gb|ACH40022.1| transcription antitermination factor NusB [Geobacter bemidjiensis Bem] Length = 145 Score = 146 bits (370), Expect = 7e-34, Method: Composition-based stats. Identities = 37/140 (26%), Positives = 67/140 (47%), Gaps = 6/140 (4%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEY-ETYRFCADTELDVESVYLHVDLEWFRVIIH 74 R R A+QALY D++ + E++ + L V S + +++ Sbjct: 4 RREGRELALQALYSKDLVLQDANTTLKRITESFSEGEEPTLSVNSKAY----AFASELVN 59 Query: 75 GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134 GV+ Q ID I+ ++ WS +R+ + +ILR V EL+ +P V ++E + +A Sbjct: 60 GVVSNLQAIDSRIAEK-SKHWSMARMARVDLNILRLAVFELLYRPDIPKNVTMNEAIEVA 118 Query: 135 HDFFYGDEPKFINAVLDKVS 154 F D F+N +LD+++ Sbjct: 119 KKFGADDSASFVNGILDEIA 138 >gi|325474207|gb|EGC77395.1| N utilization substance protein B [Treponema denticola F0402] Length = 136 Score = 146 bits (370), Expect = 7e-34, Method: Composition-based stats. Identities = 40/145 (27%), Positives = 68/145 (46%), Gaps = 10/145 (6%) Query: 12 LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71 +S R R+ A QAL D+ G ++ + + + + + + YL + ++ Sbjct: 1 MSVGRRRGRILAFQALVAWDVGGA----VLDDLLNFSWQNENSIKDPNSYL-----FPKM 51 Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131 ++ G ++ ID +I L W RL+ + +ILR V LI P ++I E + Sbjct: 52 MVLGTIENITEIDKVIQENLD-NWVIDRLNSVDKAILRLSVYSLIYQKDTPPPIVIDEAI 110 Query: 132 CIAHDFFYGDEPKFINAVLDKVSRK 156 +A DF D KF+NAVLD + K Sbjct: 111 NLAKDFGTDDSYKFVNAVLDSIKNK 135 >gi|322412645|gb|EFY03553.1| transcription antitermination protein NusB [Streptococcus dysgalactiae subsp. dysgalactiae ATCC 27957] Length = 149 Score = 146 bits (370), Expect = 8e-34, Method: Composition-based stats. Identities = 36/144 (25%), Positives = 66/144 (45%), Gaps = 8/144 (5%) Query: 14 HRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLE-WFRVI 72 + R R A QAL+ +++ G +F D + V+ ++L + + Sbjct: 7 NSRRDLRERAFQALFSMEMGGDFL-------VASQFAYDYDKVVDEGNEALELPIFLLNL 59 Query: 73 IHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVC 132 ++GV D K+ +D IS L WS RL + ++LR G+ E+ + P V ++E + Sbjct: 60 VNGVNDHKEELDRTISEHLKTGWSLERLTVTDKTLLRLGLFEIKYFNETPDRVALNEIIE 119 Query: 133 IAHDFFYGDEPKFINAVLDKVSRK 156 +A + KFIN +L + + Sbjct: 120 VAKKYSDETSAKFINGLLSQFVSE 143 >gi|283853206|ref|ZP_06370458.1| NusB antitermination factor [Desulfovibrio sp. FW1012B] gi|283571379|gb|EFC19387.1| NusB antitermination factor [Desulfovibrio sp. FW1012B] Length = 167 Score = 146 bits (370), Expect = 8e-34, Method: Composition-based stats. Identities = 37/161 (22%), Positives = 67/161 (41%), Gaps = 9/161 (5%) Query: 1 MTIQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESV 60 M ++KK + R AR A + LY G E R A DV Sbjct: 9 MPESEDKKPV---ASRRKARKQAFECLY-----GLIFESAADERSLRRVFARCPHDVMEG 60 Query: 61 YLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHS 120 + ++ GV ++ +D LI ++ W SR+ + +ILR + E++ Sbjct: 61 EDGAGQAFAWELVQGVWQNQRELDALIVKF-SKNWKLSRIAKVELTILRLALYEILHRSD 119 Query: 121 VPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKR 161 +P+ V ++E + +A + + FIN +LD V++ + Sbjct: 120 IPLRVALNEAIELAKRYGDENSRNFINGILDAVAKAVDSGE 160 >gi|289550704|ref|YP_003471608.1| Transcription termination protein NusB [Staphylococcus lugdunensis HKU09-01] gi|315658200|ref|ZP_07911072.1| transcription antitermination factor NusB [Staphylococcus lugdunensis M23590] gi|289180236|gb|ADC87481.1| Transcription termination protein NusB [Staphylococcus lugdunensis HKU09-01] gi|315496529|gb|EFU84852.1| transcription antitermination factor NusB [Staphylococcus lugdunensis M23590] Length = 128 Score = 146 bits (370), Expect = 8e-34, Method: Composition-based stats. Identities = 41/138 (29%), Positives = 60/138 (43%), Gaps = 13/138 (9%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 R +R A Q L+Q+++ +S E F D D+ D + ++ G Sbjct: 3 RKESRTQAFQTLFQLEMKDSD----LSISEAINFIKDDHPDL-------DFTFIHWLVTG 51 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135 V D + +D I L + WS +RL ILR EL+ P +VII+E V + Sbjct: 52 VKDHEPILDKAIEPHL-KDWSLNRLLKTDRIILRMATFELLHS-DTPPKVIINEAVELTK 109 Query: 136 DFFYGDEPKFINAVLDKV 153 F D KFIN VL + Sbjct: 110 QFSDDDHYKFINGVLSNI 127 >gi|22537833|ref|NP_688684.1| transcription antitermination protein NusB [Streptococcus agalactiae 2603V/R] gi|25011777|ref|NP_736172.1| transcription antitermination protein NusB [Streptococcus agalactiae NEM316] gi|76787394|ref|YP_330307.1| transcription antitermination protein NusB [Streptococcus agalactiae A909] gi|76798712|ref|ZP_00780933.1| transcription antitermination factor NusB [Streptococcus agalactiae 18RS21] gi|77406598|ref|ZP_00783645.1| transcription antitermination factor NusB [Streptococcus agalactiae H36B] gi|77409287|ref|ZP_00785993.1| transcription antitermination factor NusB [Streptococcus agalactiae COH1] gi|77412442|ref|ZP_00788747.1| transcription antitermination factor NusB [Streptococcus agalactiae CJB111] gi|77413939|ref|ZP_00790114.1| transcription antitermination factor NusB [Streptococcus agalactiae 515] gi|54037925|sp|P65581|NUSB_STRA5 RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|54041675|sp|P65580|NUSB_STRA3 RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|119390832|sp|Q3JZJ6|NUSB_STRA1 RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|22534728|gb|AAN00557.1|AE014269_1 N utilization substance protein B [Streptococcus agalactiae 2603V/R] gi|24413317|emb|CAD47396.1| Unknown [Streptococcus agalactiae NEM316] gi|76562451|gb|ABA45035.1| transcription antitermination factor NusB [Streptococcus agalactiae A909] gi|76585937|gb|EAO62474.1| transcription antitermination factor NusB [Streptococcus agalactiae 18RS21] gi|77160024|gb|EAO71160.1| transcription antitermination factor NusB [Streptococcus agalactiae 515] gi|77161506|gb|EAO72512.1| transcription antitermination factor NusB [Streptococcus agalactiae CJB111] gi|77172119|gb|EAO75282.1| transcription antitermination factor NusB [Streptococcus agalactiae COH1] gi|77174791|gb|EAO77613.1| transcription antitermination factor NusB [Streptococcus agalactiae H36B] gi|319745636|gb|EFV97936.1| transcription antitermination factor NusB [Streptococcus agalactiae ATCC 13813] Length = 144 Score = 146 bits (370), Expect = 8e-34, Method: Composition-based stats. Identities = 36/138 (26%), Positives = 59/138 (42%), Gaps = 7/138 (5%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 R R A Q L+ ++ G F + V + + +++G Sbjct: 9 RRDLRERAFQTLFSLETGGEFIDAA-------HFAYGYDKTVSEDKVLEVPIFLLNLVNG 61 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135 V+D K +D LISS L WS RL ++ S+LR G+ E+ P V ++E + IA Sbjct: 62 VVDHKDELDTLISSHLKSGWSLERLTLVDKSLLRLGLYEIKYFDETPDRVALNEIIEIAK 121 Query: 136 DFFYGDEPKFINAVLDKV 153 + KF+N +L + Sbjct: 122 KYSDETSAKFVNGLLSQF 139 >gi|254556506|ref|YP_003062923.1| transcription antitermination protein NusB [Lactobacillus plantarum JDM1] gi|308180449|ref|YP_003924577.1| transcription antitermination protein NusB [Lactobacillus plantarum subsp. plantarum ST-III] gi|254045433|gb|ACT62226.1| transcription antitermination protein NusB [Lactobacillus plantarum JDM1] gi|308045940|gb|ADN98483.1| transcription antitermination protein NusB [Lactobacillus plantarum subsp. plantarum ST-III] Length = 139 Score = 146 bits (370), Expect = 8e-34, Method: Composition-based stats. Identities = 35/146 (23%), Positives = 60/146 (41%), Gaps = 9/146 (6%) Query: 12 LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71 +S R R A QAL+ ++ + + + L+ E + Sbjct: 1 MSLTRHEIREKAFQALFALNANPDADENQLFQQL---------LNPEEADAVEIPAYLST 51 Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131 ++ GV + + +D I L++KWS RL ILR EL VP +V ++E + Sbjct: 52 LVTGVREHQAELDAQIQPYLSQKWSLDRLAKTDLIILRIAFFELQFVDDVPAKVAVNEAI 111 Query: 132 CIAHDFFYGDEPKFINAVLDKVSRKE 157 + F KF++ VL KV + + Sbjct: 112 ELTKAFSDDRSRKFVSGVLGKVVKNQ 137 >gi|294055107|ref|YP_003548765.1| NusB antitermination factor [Coraliomargarita akajimensis DSM 45221] gi|293614440|gb|ADE54595.1| NusB antitermination factor [Coraliomargarita akajimensis DSM 45221] Length = 153 Score = 146 bits (370), Expect = 8e-34, Method: Composition-based stats. Identities = 43/166 (25%), Positives = 72/166 (43%), Gaps = 15/166 (9%) Query: 3 IQDNKKDLKLSHRRGIARLAAVQALYQIDIIG-CSTTEIISEYETYRFCADTELDVESVY 61 +++ + +R R AVQ LYQ ++ + I+ + + Sbjct: 1 MENEDPKVNKRSQRRDCRTCAVQFLYQWEMNKPDELNDAIAVFFE-----------GQGF 49 Query: 62 LHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSV 121 + +IHG +D ID I S W+F R+ I SILR + EL+ + Sbjct: 50 SRNYYAFSEELIHGALDNIAKIDDEIMSH-ANNWTFDRIAKIDLSILRLAIYELLYRTDI 108 Query: 122 PVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRSGCVSA 167 P V I+E + ++ F D +FIN +LDK+ K++I R +A Sbjct: 109 PPIVSINEAIDLSKVFSNPDSKRFINGILDKM--KDKINRPLRKAA 152 >gi|28211246|ref|NP_782190.1| transcription antitermination protein NusB [Clostridium tetani E88] gi|32171611|sp|Q894G5|NUSB_CLOTE RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|28203686|gb|AAO36127.1| N utilization substance protein B [Clostridium tetani E88] Length = 153 Score = 146 bits (370), Expect = 8e-34, Method: Composition-based stats. Identities = 45/152 (29%), Positives = 74/152 (48%), Gaps = 11/152 (7%) Query: 15 RRGIARLAAVQALYQIDIIGCSTTEII---------SEYETYRFCADTELDVESVYL-HV 64 +R +R +Q L+++ I + EII E E+D E + L V Sbjct: 2 KRKKSREMTMQLLFEMMIKKENYVEIINTLKEALTEEEDINSILGEKKEMDEERIDLDEV 61 Query: 65 DLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVE 124 DLE+ + GV + + +D I L + W+ +RL + +ILR E++ + VP Sbjct: 62 DLEYLIHTLKGVEENSKVLDEHIEKYL-KNWTLNRLAKVDLAILRLCSYEILFSNEVPDN 120 Query: 125 VIISEYVCIAHDFFYGDEPKFINAVLDKVSRK 156 V I+E V +A + P FINAVLDK++++ Sbjct: 121 VAINEGVELAKKYGDDKSPAFINAVLDKIAKQ 152 >gi|251783265|ref|YP_002997570.1| transcription antitermination protein NusB [Streptococcus dysgalactiae subsp. equisimilis GGS_124] gi|242391897|dbj|BAH82356.1| transcription antitermination protein [Streptococcus dysgalactiae subsp. equisimilis GGS_124] Length = 155 Score = 146 bits (370), Expect = 8e-34, Method: Composition-based stats. Identities = 37/144 (25%), Positives = 66/144 (45%), Gaps = 8/144 (5%) Query: 14 HRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLE-WFRVI 72 + R R A QAL+ +++ G +F D + V+ ++L + + Sbjct: 13 NSRRDLRERAFQALFSMEMGGDFL-------VASQFAYDYDKVVDEGNEALELPIFLLNL 65 Query: 73 IHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVC 132 ++GV D K+ +D IS L WS RL M ++LR G+ E+ + P V ++E + Sbjct: 66 VNGVNDHKEELDRTISEHLKTGWSLERLTMTDKTLLRLGLFEIKYFNETPDRVALNEIIE 125 Query: 133 IAHDFFYGDEPKFINAVLDKVSRK 156 +A + KFIN +L + + Sbjct: 126 VAKKYSDETSAKFINGLLSQFVSE 149 >gi|258405547|ref|YP_003198289.1| NusB antitermination factor [Desulfohalobium retbaense DSM 5692] gi|257797774|gb|ACV68711.1| NusB antitermination factor [Desulfohalobium retbaense DSM 5692] Length = 147 Score = 146 bits (370), Expect = 8e-34, Method: Composition-based stats. Identities = 36/140 (25%), Positives = 61/140 (43%), Gaps = 6/140 (4%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 R + R A Q LY ++ + T+ + E E D W ++ G Sbjct: 9 RRLGRQTAFQVLYSLNFQESHGNGLALLQRTFTHLIEQE---EVGEAAADFAW--ELVQG 63 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135 V + + +D LIS ++ W R+ I SILR + E+ +P +V I+E V +A Sbjct: 64 VWENRDELDELISRH-SQHWRVGRIAKIELSILRLALYEMYFRSDIPPKVAINEGVELAK 122 Query: 136 DFFYGDEPKFINAVLDKVSR 155 +F F+N +LD ++ Sbjct: 123 EFGDEQSRGFVNGILDAAAK 142 >gi|74318210|ref|YP_315950.1| NusB antitermination factor [Thiobacillus denitrificans ATCC 25259] gi|119390844|sp|Q3SGU8|NUSB_THIDA RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|74057705|gb|AAZ98145.1| NusB antitermination factor [Thiobacillus denitrificans ATCC 25259] Length = 145 Score = 146 bits (370), Expect = 9e-34, Method: Composition-based stats. Identities = 42/148 (28%), Positives = 67/148 (45%), Gaps = 13/148 (8%) Query: 12 LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71 ++ R +AR +Q +Y I G T I + L + + D +FR Sbjct: 1 MAGSRKVAREFTLQGIYAWMIGGADVTLIAA-----------NLKEDEQFKRADEAYFRT 49 Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131 +++GV+ + + I+ L + + L I SIL G EL+ C VP V I+E V Sbjct: 50 LLYGVLKEEDMLSSRIAPLLDR--AVAELSPIERSILLIGAYELLHCPDVPWRVAINESV 107 Query: 132 CIAHDFFYGDEPKFINAVLDKVSRKEEI 159 +A F D K+IN VLDK+++ Sbjct: 108 ELAKKFGGTDGHKYINGVLDKLAQDVRA 135 >gi|42527164|ref|NP_972262.1| transcription antitermination protein NusB [Treponema denticola ATCC 35405] gi|81570229|sp|Q73M53|NUSB_TREDE RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|41817588|gb|AAS12173.1| N utilization substance protein B [Treponema denticola ATCC 35405] Length = 136 Score = 146 bits (370), Expect = 9e-34, Method: Composition-based stats. Identities = 40/145 (27%), Positives = 68/145 (46%), Gaps = 10/145 (6%) Query: 12 LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71 +S R R+ A QAL D+ G ++ + + + + + + YL + ++ Sbjct: 1 MSVGRRRGRILAFQALVAWDVGGA----VLDDLLNFSWQNEDSIKDPNGYL-----FPKM 51 Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131 ++ G ++ ID +I L W RL+ + +ILR V LI P ++I E + Sbjct: 52 MVLGTIENITEIDKVIQENLD-NWVIDRLNSVDKAILRLSVYSLIYQKDTPPPIVIDEAI 110 Query: 132 CIAHDFFYGDEPKFINAVLDKVSRK 156 +A DF D KF+NAVLD + K Sbjct: 111 NLAKDFGTDDSYKFVNAVLDSIKNK 135 >gi|28378299|ref|NP_785191.1| transcription antitermination protein NusB [Lactobacillus plantarum WCFS1] gi|32171607|sp|Q88WM9|NUSB_LACPL RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|28271134|emb|CAD64039.1| transcription termination factor NusB [Lactobacillus plantarum WCFS1] Length = 139 Score = 146 bits (370), Expect = 9e-34, Method: Composition-based stats. Identities = 35/146 (23%), Positives = 60/146 (41%), Gaps = 9/146 (6%) Query: 12 LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71 +S R R A QAL+ ++ + + + L+ E + Sbjct: 1 MSLTRHEIREKAFQALFALNANPDADENQLFQQL---------LNPEETDAVEIPAYLST 51 Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131 ++ GV + + +D I L++KWS RL ILR EL VP +V ++E + Sbjct: 52 LVTGVREHQVELDAQIQPYLSQKWSLDRLAKTDLIILRIAFFELQFVDDVPTKVAVNEAI 111 Query: 132 CIAHDFFYGDEPKFINAVLDKVSRKE 157 + F KF++ VL KV + + Sbjct: 112 ELTKAFSDDRSRKFVSGVLGKVVKNQ 137 >gi|224370206|ref|YP_002604370.1| NusB [Desulfobacterium autotrophicum HRM2] gi|259514822|sp|C0QKW6|NUSB_DESAH RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|223692923|gb|ACN16206.1| NusB [Desulfobacterium autotrophicum HRM2] Length = 143 Score = 146 bits (369), Expect = 1e-33, Method: Composition-based stats. Identities = 39/147 (26%), Positives = 68/147 (46%), Gaps = 10/147 (6%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 R AR A+QALY D+ S E+++ + + + E +F ++ G Sbjct: 4 RRQARELALQALYYFDVDKGSPDELLALFCS---------NFEDRIDESIRPFFLDLVKG 54 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135 V + +D L++ + W SR+ ++ +I+R + E+++ +P V I+E V I Sbjct: 55 VTQARAEVDDLMNRS-SSNWKVSRMPIVDRNIMRMAIFEMLKQPDIPPTVSINEAVEIGK 113 Query: 136 DFFYGDEPKFINAVLDKVSRKEEIKRS 162 F FIN VLDK+ + I R Sbjct: 114 RFGTRGSGAFINGVLDKIRVLKNIDRG 140 >gi|153208973|ref|ZP_01947179.1| transcription antitermination factor NusB [Coxiella burnetii 'MSU Goat Q177'] gi|165924151|ref|ZP_02219983.1| transcription antitermination factor NusB [Coxiella burnetii RSA 334] gi|212219014|ref|YP_002305801.1| transcription antitermination protein NusB [Coxiella burnetii CbuK_Q154] gi|238055349|sp|B6J8Q7|NUSB_COXB1 RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|120575573|gb|EAX32197.1| transcription antitermination factor NusB [Coxiella burnetii 'MSU Goat Q177'] gi|165916410|gb|EDR35014.1| transcription antitermination factor NusB [Coxiella burnetii RSA 334] gi|212013276|gb|ACJ20656.1| utilization substance protein B [Coxiella burnetii CbuK_Q154] Length = 138 Score = 146 bits (369), Expect = 1e-33, Method: Composition-based stats. Identities = 40/141 (28%), Positives = 69/141 (48%), Gaps = 13/141 (9%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 R AR A+QALYQ +IS++ +DTE + +F+ ++ G Sbjct: 6 RHNARRYALQALYQWFFCETKPDALISQFMEEHDLSDTE-----------VAYFKEVVTG 54 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135 + ID L+++ L K S L+ + S+LR + EL+ VP +V+I E + + Sbjct: 55 TIQHVAIIDELMTAHLDRK--ISALNPVELSVLRLSIYELLHRKEVPYKVVIDEALELVK 112 Query: 136 DFFYGDEPKFINAVLDKVSRK 156 +F K++NA+LD +S + Sbjct: 113 EFGAEAGHKYVNAILDVLSSE 133 >gi|54025601|ref|YP_119843.1| transcription antitermination protein NusB [Nocardia farcinica IFM 10152] gi|81602600|sp|Q5YTL2|NUSB_NOCFA RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|54017109|dbj|BAD58479.1| putative transcription termination factor [Nocardia farcinica IFM 10152] Length = 169 Score = 146 bits (369), Expect = 1e-33, Method: Composition-based stats. Identities = 42/150 (28%), Positives = 65/150 (43%), Gaps = 9/150 (6%) Query: 5 DNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHV 64 D K K R AR AV L++ + ++++E +L + Sbjct: 7 DKKSTFKKLGARHKARRRAVDLLFEAEARDVDAADLLTER--------ADLATRDQSVAP 58 Query: 65 DLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVE 124 + R ++ GV D + +D I S L + W+ SRL + +ILR V EL VP Sbjct: 59 LHAYTRTLVEGVADELERVDGTIESYL-QDWTLSRLPAVDRAILRVAVWELFHATDVPPV 117 Query: 125 VIISEYVCIAHDFFYGDEPKFINAVLDKVS 154 V + E V +A + D P F+N VL +V Sbjct: 118 VAVDEAVELAKELSTDDSPSFVNGVLGQVV 147 >gi|288553331|ref|YP_003425266.1| transcription antitermination protein NusB [Bacillus pseudofirmus OF4] gi|288544491|gb|ADC48374.1| transcription antitermination protein NusB [Bacillus pseudofirmus OF4] Length = 135 Score = 146 bits (369), Expect = 1e-33, Method: Composition-based stats. Identities = 41/138 (29%), Positives = 64/138 (46%), Gaps = 15/138 (10%) Query: 15 RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74 R +ARL A QALYQ+D+ G I E+F ++ Sbjct: 2 NRRLARLRAAQALYQMDLTGSEMESAIESVLEDN--------------EKQSEFFTQLVQ 47 Query: 75 GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134 G + K ID IS+ L E W+ SR+ + +I+R + E++E +PV V +E + +A Sbjct: 48 GTTELKTKIDETISANL-EGWTISRMGHVDRAIIRMAMYEMLEVEDIPVNVTFNEAIELA 106 Query: 135 HDFFYGDEPKFINAVLDK 152 F + +F+N VL K Sbjct: 107 KAFGGEEAGRFVNGVLSK 124 >gi|331269441|ref|YP_004395933.1| transcription antitermination factor NusB [Clostridium botulinum BKT015925] gi|329125991|gb|AEB75936.1| transcription antitermination factor NusB [Clostridium botulinum BKT015925] Length = 135 Score = 146 bits (369), Expect = 1e-33, Method: Composition-based stats. Identities = 39/141 (27%), Positives = 67/141 (47%), Gaps = 10/141 (7%) Query: 15 RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74 R +R A++ L+++ I EII ++ + ++ VD E+ II Sbjct: 2 NRRKSREIAMKLLFEMSINKEELKEIIHNFKE---------NTDTNLKDVDFEYINKIIQ 52 Query: 75 GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134 GV D + ID I LT+ W +RL + +ILR E++ VP +V ++E + +A Sbjct: 53 GVQDNIEDIDSKIEENLTK-WKLNRLSKMDLTILRISTYEIMFMEDVPEKVAVNEGIELA 111 Query: 135 HDFFYGDEPKFINAVLDKVSR 155 + + P FIN VL + + Sbjct: 112 KKYSAENSPAFINGVLGNMIK 132 >gi|303239904|ref|ZP_07326427.1| NusB antitermination factor [Acetivibrio cellulolyticus CD2] gi|302592614|gb|EFL62339.1| NusB antitermination factor [Acetivibrio cellulolyticus CD2] Length = 141 Score = 146 bits (369), Expect = 1e-33, Method: Composition-based stats. Identities = 36/140 (25%), Positives = 63/140 (45%), Gaps = 12/140 (8%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 R AR A++ +YQ++I S E I + + D + ++ G Sbjct: 3 RRAAREIAMKLVYQLEIQKDSREEQIRQTLE-----------QENVTENDTNYITDVVEG 51 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135 V + ID I ++ W SR+ + SILR + E+ + +P V ++E V +A Sbjct: 52 VFKNLEQIDKTIEMY-SKGWKLSRISKVDLSILRLSIYEISFRNDIPFNVSVNEAVELAK 110 Query: 136 DFFYGDEPKFINAVLDKVSR 155 ++ + FIN +L KVS+ Sbjct: 111 NYSGEESSSFINGILGKVSK 130 >gi|320011921|gb|ADW06771.1| NusB antitermination factor [Streptomyces flavogriseus ATCC 33331] Length = 143 Score = 146 bits (369), Expect = 1e-33, Method: Composition-based stats. Identities = 42/147 (28%), Positives = 67/147 (45%), Gaps = 12/147 (8%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 R AR A Q L++ D G S +++++ D + V E+ ++ G Sbjct: 4 RNKARKRAFQILFEADQRGESVQTVLADWVRLSRTDDRQPPVG--------EFTMELVEG 55 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135 ID LI + W R+ ++ SILR G EL+ S P V+I E V +A Sbjct: 56 YAQYADRIDDLIVTYAV-DWEIDRMPVVDRSILRLGAYELVWMDSTPDAVVIDEAVQLAK 114 Query: 136 DFFYGDEPKFINAVLDKVSRKEEIKRS 162 +F D P F+N +L +R +++K S Sbjct: 115 EFSTDDSPAFVNGLL---ARFKDLKPS 138 >gi|319651493|ref|ZP_08005621.1| transcription antitermination protein NusB [Bacillus sp. 2_A_57_CT2] gi|317396808|gb|EFV77518.1| transcription antitermination protein NusB [Bacillus sp. 2_A_57_CT2] Length = 129 Score = 146 bits (369), Expect = 1e-33, Method: Composition-based stats. Identities = 44/143 (30%), Positives = 62/143 (43%), Gaps = 17/143 (11%) Query: 15 RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74 +R AR A+QAL+QID+ I E+ ++ Sbjct: 2 KRRTAREKALQALFQIDVSQAEPETAIEHVLE---------------GEKSDEYLNKLVS 46 Query: 75 GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIE-CHSVPVEVIISEYVCI 133 GV+ K+ ID I L EKW+ RL + ++LR V EL+ VP V++ E + I Sbjct: 47 GVLQHKETIDGEIKGFL-EKWTLERLATVDRNLLRLSVYELLYLAEEVPANVVLDEAIEI 105 Query: 134 AHDFFYGDEPKFINAVLDKVSRK 156 A + KFIN VL KV K Sbjct: 106 AKLYGDDQSSKFINGVLSKVKEK 128 >gi|296170770|ref|ZP_06852342.1| N utilization substance protein B [Mycobacterium parascrofulaceum ATCC BAA-614] gi|295894585|gb|EFG74322.1| N utilization substance protein B [Mycobacterium parascrofulaceum ATCC BAA-614] Length = 168 Score = 146 bits (369), Expect = 1e-33, Method: Composition-based stats. Identities = 41/146 (28%), Positives = 63/146 (43%), Gaps = 9/146 (6%) Query: 8 KDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLE 67 + + R AR AV L++ + G E++ T L + + Sbjct: 3 RPARPVKGRHQARKRAVDLLFEAEARGLGPAEVVDVRAT--------LAAANPDVAPLQP 54 Query: 68 WFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVII 127 + GV + HID LISS L + W+ RL + +ILR V EL+ VP V + Sbjct: 55 YTVAAARGVGEHAAHIDDLISSHL-QGWTLDRLPAVDRAILRVAVWELLYADDVPEPVAV 113 Query: 128 SEYVCIAHDFFYGDEPKFINAVLDKV 153 E V +A + + P F+N VL +V Sbjct: 114 DEAVQLAKELSTDESPAFVNGVLGQV 139 >gi|166710625|ref|ZP_02241832.1| transcription antitermination protein NusB [Xanthomonas oryzae pv. oryzicola BLS256] Length = 156 Score = 146 bits (369), Expect = 1e-33, Method: Composition-based stats. Identities = 33/140 (23%), Positives = 60/140 (42%), Gaps = 13/140 (9%) Query: 25 QALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHID 84 QA+Y I G ++I+++ E + DL +F ++ GV+ + +D Sbjct: 30 QAVYAWQISGGFAKQVIAQFAH-----------EQAHEVADLAYFENLVEGVLTNRAELD 78 Query: 85 LLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPK 144 ++ L +D I ++LR EL+ VP V+I+E + A F Sbjct: 79 TALTPYLDRG--VEEVDAIERAVLRLAAYELLYRQDVPYRVLINEAIETAKRFGSEHGHT 136 Query: 145 FINAVLDKVSRKEEIKRSGC 164 ++N VLD+ + + SG Sbjct: 137 YVNGVLDRAAVELRKVESGA 156 >gi|288906084|ref|YP_003431306.1| antitermination protein NusB [Streptococcus gallolyticus UCN34] gi|306832123|ref|ZP_07465277.1| transcription antitermination factor NusB [Streptococcus gallolyticus subsp. gallolyticus TX20005] gi|325979049|ref|YP_004288765.1| transcription antitermination factor NusB [Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069] gi|288732810|emb|CBI14386.1| putative antitermination protein NusB [Streptococcus gallolyticus UCN34] gi|304425562|gb|EFM28680.1| transcription antitermination factor NusB [Streptococcus gallolyticus subsp. gallolyticus TX20005] gi|325178977|emb|CBZ49021.1| transcription antitermination factor NusB [Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069] Length = 142 Score = 146 bits (369), Expect = 1e-33, Method: Composition-based stats. Identities = 33/144 (22%), Positives = 58/144 (40%), Gaps = 7/144 (4%) Query: 11 KLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFR 70 ++ R R A QAL+ ++ G +F + +E + Sbjct: 4 NFTNSRRDLRERAFQALFSLEFGGEYLAAA-------QFAYTYDKTIEEDDTIDVPVFLL 56 Query: 71 VIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEY 130 ++ GV D + ID I + L WS RL + ++LR G+ E+ P V ++E Sbjct: 57 NLVKGVQDFQSEIDQQIETHLKSGWSLERLTLTDRTLLRLGLYEIKYFEETPGRVAVNEI 116 Query: 131 VCIAHDFFYGDEPKFINAVLDKVS 154 + IA + KF+N +L + Sbjct: 117 IEIAKKYSDDTSAKFVNGLLSQFV 140 >gi|300767235|ref|ZP_07077147.1| transcription antitermination factor NusB [Lactobacillus plantarum subsp. plantarum ATCC 14917] gi|300495054|gb|EFK30210.1| transcription antitermination factor NusB [Lactobacillus plantarum subsp. plantarum ATCC 14917] Length = 139 Score = 146 bits (368), Expect = 1e-33, Method: Composition-based stats. Identities = 35/146 (23%), Positives = 61/146 (41%), Gaps = 9/146 (6%) Query: 12 LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71 +S R R A QAL+ ++ + + + L+ E + Sbjct: 1 MSLTRHEIREKAFQALFALNANPDADENQLFQQL---------LNPEEADAVEIPAYLST 51 Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131 ++ GV + + +D I L++KWS +RL ILR EL VP +V ++E + Sbjct: 52 LVTGVREHQAELDAQIQPYLSQKWSLNRLAKTDLIILRIAFFELQFVDDVPAKVAVNEAI 111 Query: 132 CIAHDFFYGDEPKFINAVLDKVSRKE 157 + F KF++ VL KV + + Sbjct: 112 ELTKAFSDDRSRKFVSGVLGKVVKNQ 137 >gi|258592181|emb|CBE68490.1| N utilization substance protein B homolog (Protein nusB) [NC10 bacterium 'Dutch sediment'] Length = 143 Score = 146 bits (368), Expect = 1e-33, Method: Composition-based stats. Identities = 38/140 (27%), Positives = 63/140 (45%), Gaps = 11/140 (7%) Query: 15 RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74 +R AR A+ LYQ++ E+ ++ F AD E ++ Sbjct: 3 KRHRARELALSLLYQLEFYPLEAFEV----QSAAFWADHPAGPEI------RSLTDELVQ 52 Query: 75 GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134 G + ++ ID +++S E W SRL ++ +LR EL+ P +V I E + +A Sbjct: 53 GTLQHQKPIDEVLASH-VEHWILSRLALVDLCVLRLAAFELLFYGKTPWKVAIDEAIELA 111 Query: 135 HDFFYGDEPKFINAVLDKVS 154 F D F+N VLDK++ Sbjct: 112 KAFGGKDSGAFVNGVLDKLA 131 >gi|182439837|ref|YP_001827556.1| transcription antitermination protein NusB [Streptomyces griseus subsp. griseus NBRC 13350] gi|326780501|ref|ZP_08239766.1| NusB antitermination factor [Streptomyces cf. griseus XylebKG-1] gi|238689031|sp|B1W456|NUSB_STRGG RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|178468353|dbj|BAG22873.1| putative NusB-family protein [Streptomyces griseus subsp. griseus NBRC 13350] gi|326660834|gb|EGE45680.1| NusB antitermination factor [Streptomyces cf. griseus XylebKG-1] Length = 143 Score = 146 bits (368), Expect = 1e-33, Method: Composition-based stats. Identities = 41/147 (27%), Positives = 66/147 (44%), Gaps = 12/147 (8%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 R AR A Q L++ D G S +++++ D + V E+ ++ G Sbjct: 4 RNKARKRAFQILFEADQRGESVQSVLADWVRLSRTDDRQPPVG--------EFTMELVEG 55 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135 ID LI + W R+ ++ SILR G ELI P V+I E V +A Sbjct: 56 YAQYADRIDDLIVTYAV-DWEIDRMPVVDRSILRLGAYELIWMDGTPDAVVIDEAVQLAK 114 Query: 136 DFFYGDEPKFINAVLDKVSRKEEIKRS 162 +F D P F+N +L +R +++K + Sbjct: 115 EFSTDDSPSFVNGLL---ARFKDLKPN 138 >gi|120610904|ref|YP_970582.1| NusB antitermination factor [Acidovorax citrulli AAC00-1] gi|120589368|gb|ABM32808.1| NusB antitermination factor [Acidovorax citrulli AAC00-1] Length = 186 Score = 146 bits (368), Expect = 1e-33, Method: Composition-based stats. Identities = 40/153 (26%), Positives = 67/153 (43%), Gaps = 14/153 (9%) Query: 2 TIQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVY 61 T +K S R +R A+QALYQ I+G + I + S + Sbjct: 26 TSTGARKAASKSA-RSRSRAFALQALYQ-HIVGRNEATAIDVF----------TRDLSGF 73 Query: 62 LHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSV 121 D + ++HG ++ +D LI+ L + + I + + GV E C V Sbjct: 74 HKADAAHYDALLHGCIENAGALDALIAPKLDR--TLEEISPIEHATMWIGVYEFQNCLDV 131 Query: 122 PVEVIISEYVCIAHDFFYGDEPKFINAVLDKVS 154 P V+I+E V +A +F D K++N VL+ ++ Sbjct: 132 PWRVVINECVELAKEFGGTDGHKYVNGVLNGLA 164 >gi|323127989|gb|ADX25286.1| transcription antitermination protein NusB [Streptococcus dysgalactiae subsp. equisimilis ATCC 12394] Length = 149 Score = 146 bits (368), Expect = 1e-33, Method: Composition-based stats. Identities = 36/144 (25%), Positives = 66/144 (45%), Gaps = 8/144 (5%) Query: 14 HRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLE-WFRVI 72 + R R A QAL+ +++ G +F D + V+ ++L + + Sbjct: 7 NSRRDLRERAFQALFSMEMGGDFL-------VASQFAYDYDKVVDEGNEALELPIFLLNL 59 Query: 73 IHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVC 132 ++GV D K+ +D IS L WS RL + ++LR G+ E+ + P V ++E + Sbjct: 60 VNGVNDHKKELDRTISEHLKTGWSLERLTVTDKTLLRLGLFEIKYFNETPDRVALNEIIE 119 Query: 133 IAHDFFYGDEPKFINAVLDKVSRK 156 +A + KFIN +L + + Sbjct: 120 VAKKYSDETSAKFINGLLSQFVSE 143 >gi|325981170|ref|YP_004293572.1| NusB antitermination factor [Nitrosomonas sp. AL212] gi|325530689|gb|ADZ25410.1| NusB antitermination factor [Nitrosomonas sp. AL212] Length = 166 Score = 146 bits (368), Expect = 1e-33, Method: Composition-based stats. Identities = 41/149 (27%), Positives = 67/149 (44%), Gaps = 13/149 (8%) Query: 6 NKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVD 65 KK K RR IAR +Q +YQ G +T I + +L + HVD Sbjct: 13 EKKAEKYKSRRRIAREFVLQGIYQWRTAGGTTNFI-----------EQQLRESEEFRHVD 61 Query: 66 LEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEV 125 + F ++ G + + ++ +I CL S L + +IL ELI +P Sbjct: 62 EKHFTHVLQGALQQVDELEKIIRPCLDR--SLDELSPVEFAILLLSTFELIHHPEIPYRA 119 Query: 126 IISEYVCIAHDFFYGDEPKFINAVLDKVS 154 I++E + +A + D K++N VLDK++ Sbjct: 120 ILNEAIELARTYGGSDGHKYVNGVLDKLA 148 >gi|70726392|ref|YP_253306.1| transcription antitermination protein NusB [Staphylococcus haemolyticus JCSC1435] gi|119390830|sp|Q4L6M5|NUSB_STAHJ RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|68447116|dbj|BAE04700.1| unnamed protein product [Staphylococcus haemolyticus JCSC1435] Length = 128 Score = 146 bits (368), Expect = 1e-33, Method: Composition-based stats. Identities = 40/138 (28%), Positives = 62/138 (44%), Gaps = 13/138 (9%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 R +R+ A Q L+Q+++ ++ E F D E +D ++ ++ G Sbjct: 3 RKESRMQAFQTLFQLEMKDTE----LTINEAINFIKDDE-------PELDFDFIHWLVTG 51 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135 V D + +D I L + WS RL ILR EL+ P +VII+E V +A Sbjct: 52 VKDHEPVLDDTIKPHL-KDWSLQRLLKTDRIILRMATFELLHS-DTPPKVIINEAVELAK 109 Query: 136 DFFYGDEPKFINAVLDKV 153 F + KFIN VL + Sbjct: 110 QFSDDEHYKFINGVLSNI 127 >gi|282866212|ref|ZP_06275259.1| NusB antitermination factor [Streptomyces sp. ACTE] gi|282558996|gb|EFB64551.1| NusB antitermination factor [Streptomyces sp. ACTE] Length = 143 Score = 146 bits (368), Expect = 1e-33, Method: Composition-based stats. Identities = 42/147 (28%), Positives = 67/147 (45%), Gaps = 12/147 (8%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 R AR A Q L++ D G S +++++ D + V E+ ++ G Sbjct: 4 RNKARKRAFQILFEADQRGESVQTVLADWVRLSRTDDRQPPVG--------EFTMELVEG 55 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135 ID LI + W R+ ++ SILR G ELI S P V+I E V +A Sbjct: 56 YAQYADRIDDLIVTYAV-DWEIDRMPVVDRSILRLGAYELIWMDSTPDAVVIDEAVQLAK 114 Query: 136 DFFYGDEPKFINAVLDKVSRKEEIKRS 162 +F D P F+N +L +R +++K + Sbjct: 115 EFSTDDSPSFVNGLL---ARFKDLKAN 138 >gi|226311922|ref|YP_002771816.1| N utilization substance protein B [Brevibacillus brevis NBRC 100599] gi|226094870|dbj|BAH43312.1| N utilization substance protein B [Brevibacillus brevis NBRC 100599] Length = 137 Score = 146 bits (368), Expect = 1e-33, Method: Composition-based stats. Identities = 34/148 (22%), Positives = 63/148 (42%), Gaps = 15/148 (10%) Query: 15 RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74 +R AR VQ L+QID+ T+ ++ + + ++ R ++ Sbjct: 5 KRRTAREKVVQCLFQIDMAEVPLTDAVA--------------LVMEESEENAQYLRYLLD 50 Query: 75 GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134 GV+ ID I L W R+ + +ILR E++ P +V+++E + +A Sbjct: 51 GVLKNLTEIDAEIKKYL-RGWQLERIANVDRAILRLAFYEIMFEQDTPDKVVMNEAIEVA 109 Query: 135 HDFFYGDEPKFINAVLDKVSRKEEIKRS 162 F ++IN VL + E K++ Sbjct: 110 KLFSDEQSHRYINGVLSSFLQSRETKQA 137 >gi|118443864|ref|YP_878051.1| transcription antitermination protein NusB [Clostridium novyi NT] gi|166215685|sp|A0Q099|NUSB_CLONN RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|118134320|gb|ABK61364.1| transcription antitermination factor NusB [Clostridium novyi NT] Length = 133 Score = 146 bits (368), Expect = 1e-33, Method: Composition-based stats. Identities = 34/141 (24%), Positives = 69/141 (48%), Gaps = 10/141 (7%) Query: 15 RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74 R +R A++ L+++ I +EI+ ++ + ++ +VD + I++ Sbjct: 2 NRRKSREVAMKLLFEMSINKEEFSEILKNFKE---------NTDTNMENVDFIYINKIVN 52 Query: 75 GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134 G+ K+ ID I LT+ W +RL I +ILR E++ +P +V ++E + +A Sbjct: 53 GIEQNKEDIDKKIEENLTK-WKLNRLSKIDLTILRISTYEIMFMEDIPNKVAVNEAIELA 111 Query: 135 HDFFYGDEPKFINAVLDKVSR 155 + + P F+N VL + + Sbjct: 112 KKYSADNSPAFVNGVLGNMIK 132 >gi|78357481|ref|YP_388930.1| transcription antitermination factor NusB [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] gi|119390767|sp|Q30YL1|NUSB_DESDG RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|78219886|gb|ABB39235.1| transcription antitermination factor NusB [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] Length = 154 Score = 146 bits (368), Expect = 1e-33, Method: Composition-based stats. Identities = 34/147 (23%), Positives = 63/147 (42%), Gaps = 6/147 (4%) Query: 13 SHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVI 72 + R +R A Q LY ++ S + +++ + + D V W + Sbjct: 7 NSSRRSSRALAFQVLYGLNF---SPAKDLAQLQEAYCASPDVSDRGGEAHPVGFAW--EL 61 Query: 73 IHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVC 132 I G ++ +D +I+ + W R+ I +ILR V E++ VP +V I+E + Sbjct: 62 IEGTWTNQKALDEIITRF-AQNWRVERIGKIELTILRLAVYEMLYRADVPPKVAINEGIE 120 Query: 133 IAHDFFYGDEPKFINAVLDKVSRKEEI 159 ++ F FIN +LD ++ E Sbjct: 121 LSKQFGDDKSRNFINGILDAAAKALEA 147 >gi|94986598|ref|YP_594531.1| transcription termination factor [Lawsonia intracellularis PHE/MN1-00] gi|119390780|sp|Q1MS16|NUSB_LAWIP RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|94730847|emb|CAJ54209.1| transcription termination factor [Lawsonia intracellularis PHE/MN1-00] Length = 161 Score = 146 bits (368), Expect = 1e-33, Method: Composition-based stats. Identities = 38/154 (24%), Positives = 64/154 (41%), Gaps = 2/154 (1%) Query: 9 DLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISE-YETYRFCADTELDVESVYLHVDLE 67 H R I R A Q LY + +T E + E + + L + Sbjct: 2 PANKKHSRRIDRTKAFQVLYSLHFTQINTIETLKEIFLNLPNPLEERNTGIITELDTQIS 61 Query: 68 WFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVII 127 + ++ GV +D +IS ++ W RL I ++LR E+ C VP +V + Sbjct: 62 FSWQLVEGVWRNVTRLDKIISQF-SQNWRVDRLGKIELTLLRIATFEMYYCPDVPPKVSL 120 Query: 128 SEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKR 161 +E + +A F KFIN +LD + + E ++ Sbjct: 121 NEALELATCFGDEKARKFINGILDAIIKAIETEK 154 >gi|262376860|ref|ZP_06070087.1| transcription antitermination factor NusB [Acinetobacter lwoffii SH145] gi|262308205|gb|EEY89341.1| transcription antitermination factor NusB [Acinetobacter lwoffii SH145] Length = 149 Score = 146 bits (368), Expect = 2e-33, Method: Composition-based stats. Identities = 38/139 (27%), Positives = 64/139 (46%), Gaps = 13/139 (9%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 + AR AVQ +Y+ + EI + VE+ VDL ++ ++ Sbjct: 12 KRKARRFAVQGIYEWQMSHNPVHEIEA-----------RTRVENAMHKVDLSYYHELLTQ 60 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135 V+ + +D L+ L + S LD + + LR G EL E +P V++ E + +A Sbjct: 61 VVANHEALDALLIPVLDRE--LSALDGVELATLRLGAYELKEHLEIPYRVVLDEAIELAK 118 Query: 136 DFFYGDEPKFINAVLDKVS 154 F D K+IN VLD+++ Sbjct: 119 HFGGADSHKYINGVLDRLA 137 >gi|257055582|ref|YP_003133414.1| transcription antitermination factor NusB [Saccharomonospora viridis DSM 43017] gi|256585454|gb|ACU96587.1| transcription antitermination factor NusB [Saccharomonospora viridis DSM 43017] Length = 153 Score = 146 bits (368), Expect = 2e-33, Method: Composition-based stats. Identities = 36/148 (24%), Positives = 67/148 (45%), Gaps = 13/148 (8%) Query: 6 NKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVD 65 ++ + + R +R AV+ LY+ + ++SE S + Sbjct: 8 SRTARRGTFSRRASRQRAVELLYEAALRKTDPATLMSERL------------GSPDVDPI 55 Query: 66 LEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEV 125 ++ ++ GV + ++ ID L++ + WS R+ + ++LR G+ EL+ VP V Sbjct: 56 SDYTITLVEGVSENRERIDELLAEY-AQGWSLERMPPVDLAVLRVGLYELLWLDDVPDPV 114 Query: 126 IISEYVCIAHDFFYGDEPKFINAVLDKV 153 I E V IA D P+F+N VL ++ Sbjct: 115 AIDEAVGIAKQLSTDDSPRFVNGVLGRI 142 >gi|168186196|ref|ZP_02620831.1| transcription antitermination factor NusB [Clostridium botulinum C str. Eklund] gi|169295703|gb|EDS77836.1| transcription antitermination factor NusB [Clostridium botulinum C str. Eklund] Length = 133 Score = 146 bits (368), Expect = 2e-33, Method: Composition-based stats. Identities = 35/141 (24%), Positives = 69/141 (48%), Gaps = 10/141 (7%) Query: 15 RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74 R +R A++ L+++ I +EI+ ++ + ++ +VD + I++ Sbjct: 2 NRRKSREVAMKLLFEMSINKEEFSEILKNFKE---------NTDTNMENVDFVYINKIVN 52 Query: 75 GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134 G+ K+ ID I LT+ W +RL I +ILR E++ +P +V ++E + +A Sbjct: 53 GIEQNKEDIDKRIEENLTK-WKLNRLSKIDLTILRISTYEIMFMEDIPNKVAVNEAIELA 111 Query: 135 HDFFYGDEPKFINAVLDKVSR 155 + + P F+N VL + R Sbjct: 112 KKYSADNSPAFVNGVLGNMIR 132 >gi|187251633|ref|YP_001876115.1| NusB antitermination factor [Elusimicrobium minutum Pei191] gi|254772640|sp|B2KE32|NUSB_ELUMP RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|186971793|gb|ACC98778.1| NusB anti-termination factor [Elusimicrobium minutum Pei191] Length = 140 Score = 146 bits (368), Expect = 2e-33, Method: Composition-based stats. Identities = 36/149 (24%), Positives = 69/149 (46%), Gaps = 12/149 (8%) Query: 15 RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74 R +AR A+Q LY D +I + + D + E+ II Sbjct: 3 NRRLAREHALQTLYYADTGKTQGKDI----------NEYKEDFKDSLDAAGFEFCSGIID 52 Query: 75 GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHS-VPVEVIISEYVCI 133 G ++ + +D +IS+ + WS +R+ ++ SILR E++ PV +I E + + Sbjct: 53 GALEHQAELDKIISAY-AKNWSLNRMSVVDRSILRMAAYEMLFSPENTPVAAVIDEAIEL 111 Query: 134 AHDFFYGDEPKFINAVLDKVSRKEEIKRS 162 A F + +FIN +LD++ ++ + ++ Sbjct: 112 AKKFSTENSSRFINGLLDQIKKERKNGQN 140 >gi|254434713|ref|ZP_05048221.1| transcription antitermination factor NusB [Nitrosococcus oceani AFC27] gi|207091046|gb|EDZ68317.1| transcription antitermination factor NusB [Nitrosococcus oceani AFC27] Length = 136 Score = 145 bits (367), Expect = 2e-33, Method: Composition-based stats. Identities = 33/136 (24%), Positives = 64/136 (47%), Gaps = 14/136 (10%) Query: 24 VQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHI 83 +Q LYQ ++G +I E+ + +D +F+ ++ GV R+ + Sbjct: 1 MQGLYQWQLMGQDVDKIDIEF------------IVQDIRGIDHAYFQELLRGVPQRQGEL 48 Query: 84 DLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEP 143 D + L + +D + C+ILR G EL+ +P V+++E + +A F Sbjct: 49 DECLGPFLDR--PINEVDPVECAILRIGAFELLCRPEIPYRVVLNEAIELAKRFGAEHGH 106 Query: 144 KFINAVLDKVSRKEEI 159 +++N +LDKV++K Sbjct: 107 RYVNGILDKVAQKVRA 122 >gi|229916254|ref|YP_002884900.1| NusB antitermination factor [Exiguobacterium sp. AT1b] gi|259514838|sp|C4L3F7|NUSB_EXISA RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|229467683|gb|ACQ69455.1| NusB antitermination factor [Exiguobacterium sp. AT1b] Length = 128 Score = 145 bits (367), Expect = 2e-33, Method: Composition-based stats. Identities = 37/143 (25%), Positives = 64/143 (44%), Gaps = 16/143 (11%) Query: 15 RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74 +R AR A+Q L+QI++ E I F D E ++ ++ Sbjct: 2 KRHEAREKAIQTLFQIEVSKLEVDEAIE------FALDGEESD---------PFYEQLVT 46 Query: 75 GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134 G ++ + ID L+ L + W RL + +ILR EL+ ++P V I+E V +A Sbjct: 47 GTLEHIEDIDALLVENL-KNWRLDRLGNVERTILRMATFELLYVETIPENVTINEAVELA 105 Query: 135 HDFFYGDEPKFINAVLDKVSRKE 157 F + K +N VL + +++ Sbjct: 106 KSFGDEEAGKLVNGVLGNIIKED 128 >gi|323705298|ref|ZP_08116873.1| NusB antitermination factor [Thermoanaerobacterium xylanolyticum LX-11] gi|323535200|gb|EGB24976.1| NusB antitermination factor [Thermoanaerobacterium xylanolyticum LX-11] Length = 139 Score = 145 bits (367), Expect = 2e-33, Method: Composition-based stats. Identities = 36/142 (25%), Positives = 57/142 (40%), Gaps = 13/142 (9%) Query: 15 RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74 R AR V+ LYQ DI +I ++ D + ++ Sbjct: 2 NRTQAREWLVKLLYQYDISKLEPQKIFDKFLEDNDPEDEK------------DYIENTFF 49 Query: 75 GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134 GV+ +ID I L + W +R+ I +I+R E++ +P V I+E V IA Sbjct: 50 GVIKNVDNIDEKIKKYL-KNWDINRIAKIDLAIMRCSFYEILYSTDIPSSVSINEAVEIA 108 Query: 135 HDFFYGDEPKFINAVLDKVSRK 156 + P FIN +L + R Sbjct: 109 KKYSTEKSPAFINGILGNLVRD 130 >gi|189347470|ref|YP_001943999.1| NusB antitermination factor [Chlorobium limicola DSM 245] gi|238692182|sp|B3EFQ8|NUSB_CHLL2 RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|189341617|gb|ACD91020.1| NusB antitermination factor [Chlorobium limicola DSM 245] Length = 164 Score = 145 bits (367), Expect = 2e-33, Method: Composition-based stats. Identities = 39/153 (25%), Positives = 63/153 (41%), Gaps = 14/153 (9%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 R R +QALY I++ T D +++F ++I Sbjct: 5 RRQIREKILQALYTIELRDTDIDSAAGWLLTQEILDDPNA----------MKFFNMLIGS 54 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135 + ID I T W SR+ +I +ILR + E++ C +P +V I+E + IA Sbjct: 55 IKAHMSEIDCYIERH-TFNWDMSRIAIIDKNILRMALAEILYCEDIPPKVSINEAIEIAK 113 Query: 136 DF-FYGDEPKFINAVLDKVSRKEEIKRSGCVSA 167 F KF+N +LD + E+K G + Sbjct: 114 KFSSTEKSSKFVNGILDAIF--NELKTDGKIHK 144 >gi|145220268|ref|YP_001130977.1| NusB antitermination factor [Prosthecochloris vibrioformis DSM 265] gi|189035896|sp|A4SG66|NUSB_PROVI RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|145206432|gb|ABP37475.1| NusB antitermination factor [Chlorobium phaeovibrioides DSM 265] Length = 164 Score = 145 bits (367), Expect = 2e-33, Method: Composition-based stats. Identities = 38/153 (24%), Positives = 69/153 (45%), Gaps = 14/153 (9%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 R R +QALY +++ T AD + +++F +++ Sbjct: 5 RRQIREKILQALYTLELRDTDIDSAAGWLLTPEILADPKA----------MKFFNLLLGN 54 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135 + + + ID I++ T W SR+ +I +ILR + EL+ C +P +V I+E + IA Sbjct: 55 IKEHMEEIDRYIAAH-TFNWDMSRIAIIDKNILRMAMAELLYCDDIPPKVSINEAIEIAK 113 Query: 136 DF-FYGDEPKFINAVLDKVSRKEEIKRSGCVSA 167 F KF+N +LD + +K G ++ Sbjct: 114 KFSSTDKSSKFVNGILDAIF--NALKEEGKINK 144 >gi|303245564|ref|ZP_07331847.1| NusB antitermination factor [Desulfovibrio fructosovorans JJ] gi|302492827|gb|EFL52692.1| NusB antitermination factor [Desulfovibrio fructosovorans JJ] Length = 177 Score = 145 bits (367), Expect = 2e-33, Method: Composition-based stats. Identities = 36/161 (22%), Positives = 65/161 (40%), Gaps = 6/161 (3%) Query: 1 MTIQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESV 60 M + + K R AR A + LY G E R A DV Sbjct: 16 MPEEASHNGDKKPVSRRKARKQAFECLY-----GLIFESAADERSLRRVFARCPHDVAEG 70 Query: 61 YLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHS 120 E+ ++ GV ++ +D I ++ W SR+ + +ILR V E++ Sbjct: 71 EDGSGQEFAWELVSGVWTNQRELDAHIVRF-SKNWKLSRIAKVELTILRLAVYEILYRSD 129 Query: 121 VPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKR 161 +P+ V ++E + +A + + FIN +LD +++ + Sbjct: 130 IPLRVALNEAIELAKRYGDENSRNFINGILDAIAKAVDSGE 170 >gi|329898127|ref|ZP_08272329.1| Transcription termination protein NusB [gamma proteobacterium IMCC3088] gi|328920907|gb|EGG28339.1| Transcription termination protein NusB [gamma proteobacterium IMCC3088] Length = 147 Score = 145 bits (367), Expect = 2e-33, Method: Composition-based stats. Identities = 50/144 (34%), Positives = 75/144 (52%), Gaps = 13/144 (9%) Query: 12 LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71 +S R AR VQALY+ + S+T+I +E+ ++ + HVDLE+F+ Sbjct: 8 ISAERHKARHYTVQALYRWHMNEQSSTDIEAEFR-----------IDYDFSHVDLEYFQA 56 Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131 ++HGV+ ID + L K D + +ILR G+ EL E VP +V+I+E V Sbjct: 57 LLHGVVKTHASIDAYLEPLLDRKLDDL--DAVELAILRMGLFELKERLDVPFKVVINEAV 114 Query: 132 CIAHDFFYGDEPKFINAVLDKVSR 155 + F D K+IN VLDK +R Sbjct: 115 SLTRKFGATDGHKYINGVLDKAAR 138 >gi|329116212|ref|ZP_08244929.1| transcription antitermination factor NusB [Streptococcus parauberis NCFD 2020] gi|326906617|gb|EGE53531.1| transcription antitermination factor NusB [Streptococcus parauberis NCFD 2020] Length = 143 Score = 145 bits (367), Expect = 2e-33, Method: Composition-based stats. Identities = 39/144 (27%), Positives = 64/144 (44%), Gaps = 7/144 (4%) Query: 14 HRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVII 73 + R R A QAL+ +++ G E +F D + VE + ++ Sbjct: 7 NSRRDLRERAFQALFNMELGG-------EFLEASQFAYDYDKIVEEGEKSDVPAFLLNLV 59 Query: 74 HGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCI 133 +GV D K +D LI+ L WS RL + ++LR G+ E+ P V ++E + I Sbjct: 60 NGVNDHKVELDQLITENLKTGWSIERLTLSDKTMLRLGLYEIKYFEETPDRVALNEIIEI 119 Query: 134 AHDFFYGDEPKFINAVLDKVSRKE 157 A + KFIN +L + + E Sbjct: 120 AKKYSDETSAKFINGLLSQFVKAE 143 >gi|311894818|dbj|BAJ27226.1| putative N utilization substance protein B homolog [Kitasatospora setae KM-6054] Length = 145 Score = 145 bits (367), Expect = 2e-33, Method: Composition-based stats. Identities = 39/151 (25%), Positives = 69/151 (45%), Gaps = 9/151 (5%) Query: 12 LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71 ++ R AR A Q L++ D G S +++++ + + V E+ Sbjct: 1 MATARSKARTRAFQILFEADHRGVSPERVLADWIARARDPRPDEGIPQV-----AEYTMQ 55 Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131 ++ G + ID LIS+ W+ R+ + +++R G ELI P V++ E V Sbjct: 56 LVEGYAQHARTIDDLISTYAV-GWTIDRMPIADRNVIRLGAYELIWEDGTPDAVVLDEAV 114 Query: 132 CIAHDFFYGDEPKFINAVLDKVSRKEEIKRS 162 IA +F + P F+N +L +R E+K S Sbjct: 115 EIAKEFSTDESPAFVNGLL---ARFMELKPS 142 >gi|238026450|ref|YP_002910681.1| transcription antitermination protein NusB [Burkholderia glumae BGR1] gi|237875644|gb|ACR27977.1| NusB antitermination factor [Burkholderia glumae BGR1] Length = 145 Score = 145 bits (367), Expect = 2e-33, Method: Composition-based stats. Identities = 41/155 (26%), Positives = 64/155 (41%), Gaps = 14/155 (9%) Query: 10 LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF 69 +K S RR +R A Q LYQ + ST EI D +L Y D E Sbjct: 1 MKKSARR-QSRELATQGLYQWLLSNASTGEI-----------DAQLRGAQGYDKADRELL 48 Query: 70 RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISE 129 I++GV+ + +++ CL +L + ++L EL P V+I+E Sbjct: 49 ETILYGVIREHADLAAVLTPCLDR--PLEQLSPVERAVLLIATFELKHQIETPYRVVINE 106 Query: 130 YVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRSGC 164 V + F D K++N V DK++ K + Sbjct: 107 AVELTKTFGGSDGYKYVNGVADKLALKLRPDEAAA 141 >gi|300784648|ref|YP_003764939.1| transcription antiterminator NusB [Amycolatopsis mediterranei U32] gi|299794162|gb|ADJ44537.1| transcription antiterminator NusB [Amycolatopsis mediterranei U32] Length = 151 Score = 145 bits (366), Expect = 2e-33, Method: Composition-based stats. Identities = 37/153 (24%), Positives = 66/153 (43%), Gaps = 13/153 (8%) Query: 1 MTIQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESV 60 M + + R AR AV+ LY+ ++++ V + Sbjct: 1 MPTSKPHPNRGGAISRRQARRRAVEMLYEAVQRDTDAVTLLAD------------RVGAT 48 Query: 61 YLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHS 120 + ++ ++ GV RK ID L++ + W+ R+ + ++LR GV EL+ Sbjct: 49 EVDPIGDYTITLVEGVTGRKTQIDELLAEH-AQGWTLERMPKVDLAVLRVGVYELLWAED 107 Query: 121 VPVEVIISEYVCIAHDFFYGDEPKFINAVLDKV 153 VP V I E V +A + D P+F+N VL ++ Sbjct: 108 VPDPVAIDEAVGLAKELSTDDSPRFVNGVLGRI 140 >gi|148379847|ref|YP_001254388.1| N utilization substance protein B [Clostridium botulinum A str. ATCC 3502] gi|153933180|ref|YP_001384144.1| transcription antitermination protein NusB [Clostridium botulinum A str. ATCC 19397] gi|153934479|ref|YP_001387685.1| transcription antitermination protein NusB [Clostridium botulinum A str. Hall] gi|153938662|ref|YP_001391208.1| transcription antitermination protein NusB [Clostridium botulinum F str. Langeland] gi|168180474|ref|ZP_02615138.1| N utilization substance protein B [Clostridium botulinum NCTC 2916] gi|168184572|ref|ZP_02619236.1| N utilization substance protein B [Clostridium botulinum Bf] gi|170757090|ref|YP_001781437.1| transcription antitermination protein NusB [Clostridium botulinum B1 str. Okra] gi|237795301|ref|YP_002862853.1| N utilization substance protein B [Clostridium botulinum Ba4 str. 657] gi|166215682|sp|A7FUU1|NUSB_CLOB1 RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|166215683|sp|A5I310|NUSB_CLOBH RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|166215684|sp|A7GEJ8|NUSB_CLOBL RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|229620057|sp|B1IMN9|NUSB_CLOBK RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|259514805|sp|C3KXC7|NUSB_CLOB6 RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|148289331|emb|CAL83427.1| N utilization substance protein b [Clostridium botulinum A str. ATCC 3502] gi|152929224|gb|ABS34724.1| N utilization substance protein B [Clostridium botulinum A str. ATCC 19397] gi|152930393|gb|ABS35892.1| N utilization substance protein B [Clostridium botulinum A str. Hall] gi|152934558|gb|ABS40056.1| N utilization substance protein B [Clostridium botulinum F str. Langeland] gi|169122302|gb|ACA46138.1| N utilization substance protein B [Clostridium botulinum B1 str. Okra] gi|182668651|gb|EDT80629.1| N utilization substance protein B [Clostridium botulinum NCTC 2916] gi|182672364|gb|EDT84325.1| N utilization substance protein B [Clostridium botulinum Bf] gi|229261715|gb|ACQ52748.1| N utilization substance protein B [Clostridium botulinum Ba4 str. 657] gi|295319244|gb|ADF99621.1| N utilization substance protein B [Clostridium botulinum F str. 230613] gi|322806136|emb|CBZ03704.1| transcription termination protein NusB [Clostridium botulinum H04402 065] Length = 143 Score = 145 bits (366), Expect = 2e-33, Method: Composition-based stats. Identities = 43/142 (30%), Positives = 68/142 (47%), Gaps = 4/142 (2%) Query: 15 RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCAD--TELDVESVYLH-VDLEWFRV 71 R +R A++ L+Q + G + E + + R + E D ESV L VD+++ + Sbjct: 2 NRRKSREVAMRLLFQTTLNGENLEEALENLKDVRESEEITKEKDYESVDLKDVDIDYVKR 61 Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131 II G+ + K+ ID I L + W RL + SILR EL +P V ++E + Sbjct: 62 IIKGIEENKEEIDEKIKGNL-KNWKIERLSKVDLSILRLCTYELKFEEDIPNRVSVNEAI 120 Query: 132 CIAHDFFYGDEPKFINAVLDKV 153 +A + FIN VL K+ Sbjct: 121 ELAKKYSGEKSATFINGVLGKM 142 >gi|54293711|ref|YP_126126.1| hypothetical protein lpl0764 [Legionella pneumophila str. Lens] gi|54296754|ref|YP_123123.1| hypothetical protein lpp0793 [Legionella pneumophila str. Paris] gi|148360619|ref|YP_001251826.1| transcription termination factor NusB [Legionella pneumophila str. Corby] gi|296106315|ref|YP_003618015.1| N utilization substance protein B [Legionella pneumophila 2300/99 Alcoy] gi|81601476|sp|Q5WYH2|NUSB_LEGPL RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|81601958|sp|Q5X720|NUSB_LEGPA RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|166215694|sp|A5IGI0|NUSB_LEGPC RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|53750539|emb|CAH11941.1| hypothetical protein lpp0793 [Legionella pneumophila str. Paris] gi|53753543|emb|CAH14998.1| hypothetical protein lpl0764 [Legionella pneumophila str. Lens] gi|148282392|gb|ABQ56480.1| transcription termination factor NusB [Legionella pneumophila str. Corby] gi|295648216|gb|ADG24063.1| N utilization substance protein B [Legionella pneumophila 2300/99 Alcoy] gi|307609522|emb|CBW99020.1| hypothetical protein LPW_08051 [Legionella pneumophila 130b] Length = 147 Score = 145 bits (366), Expect = 2e-33, Method: Composition-based stats. Identities = 35/143 (24%), Positives = 69/143 (48%), Gaps = 13/143 (9%) Query: 14 HRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVII 73 + AR A+QALYQ + G EI +++ T VD E+F ++ Sbjct: 7 RGKRRARKFALQALYQWLMSGTDLHEIEAQFRTIN-----------NMDKVDGEYFCRLL 55 Query: 74 HGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCI 133 +G+ + ++ + L + + L+ I ++LR G EL C +P +VI+ E V + Sbjct: 56 YGIPTHVEALEASLLPYLDRE--INALNPIELTVLRIGSFELFHCPEIPYKVILDESVSL 113 Query: 134 AHDFFYGDEPKFINAVLDKVSRK 156 +F + +++N VL+ ++++ Sbjct: 114 TKEFGSQEGYRYVNGVLNNLAKQ 136 >gi|188590523|ref|YP_001921552.1| transcription antitermination factor NusB [Clostridium botulinum E3 str. Alaska E43] gi|238689705|sp|B2V4R8|NUSB_CLOBA RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|188500804|gb|ACD53940.1| transcription antitermination factor NusB [Clostridium botulinum E3 str. Alaska E43] Length = 133 Score = 145 bits (366), Expect = 2e-33, Method: Composition-based stats. Identities = 37/142 (26%), Positives = 64/142 (45%), Gaps = 10/142 (7%) Query: 15 RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74 R ++R A++ L+ + + + E + + + ES +D+ + + I+ Sbjct: 2 NRKLSREKAMELLFGMTLNTDNCEETLGNFID---------NYESDIKELDITYIKRILI 52 Query: 75 GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134 GV + K +ID IS L W R+ + ILR V EL+ +P V I+E + I Sbjct: 53 GVENNKDNIDEAISKNLC-NWKIDRISKVNLCILRLAVYELLHDEEIPNRVAINEALEIT 111 Query: 135 HDFFYGDEPKFINAVLDKVSRK 156 + FIN VLD + +K Sbjct: 112 KKYSDEKSVSFINGVLDNILKK 133 >gi|21219991|ref|NP_625770.1| transcription antitermination protein NusB [Streptomyces coelicolor A3(2)] gi|256788910|ref|ZP_05527341.1| transcription antitermination protein NusB [Streptomyces lividans TK24] gi|289772797|ref|ZP_06532175.1| transcription antitermination factor NusB [Streptomyces lividans TK24] gi|22095971|sp|Q9KXR0|NUSB_STRCO RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|8249949|emb|CAB93370.1| putative NusB-family protein [Streptomyces coelicolor A3(2)] gi|289702996|gb|EFD70425.1| transcription antitermination factor NusB [Streptomyces lividans TK24] Length = 142 Score = 145 bits (366), Expect = 2e-33, Method: Composition-based stats. Identities = 38/147 (25%), Positives = 70/147 (47%), Gaps = 12/147 (8%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 R AR A Q L++ D G +++++ + + V E+ ++ G Sbjct: 4 RNTARKRAFQILFEGDQRGADVLTVLADWVRHSRSDTRQPPVS--------EYTMELVEG 55 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135 R + ID LI+ + W+ R+ ++ +ILR G EL+ + P V++ E V +A Sbjct: 56 YAGRAERIDELIAQY-SVDWTLDRMPVVDRNILRLGAYELLWVDATPDAVVLDEMVQLAK 114 Query: 136 DFFYGDEPKFINAVLDKVSRKEEIKRS 162 +F + P FIN +L ++ +E+K S Sbjct: 115 EFSTDESPAFINGLLGRL---KELKPS 138 >gi|187935150|ref|YP_001886595.1| transcription antitermination factor NusB [Clostridium botulinum B str. Eklund 17B] gi|238691670|sp|B2TRN6|NUSB_CLOBB RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|187723303|gb|ACD24524.1| transcription antitermination factor NusB [Clostridium botulinum B str. Eklund 17B] Length = 133 Score = 145 bits (366), Expect = 2e-33, Method: Composition-based stats. Identities = 36/142 (25%), Positives = 64/142 (45%), Gaps = 10/142 (7%) Query: 15 RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74 R ++R A++ L+ + + + E + + + ES +D+ + + I+ Sbjct: 2 NRKLSREKAMELLFGMTLNTDNCEETLENFID---------NYESDIKELDITYIKRILI 52 Query: 75 GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134 GV + K +ID IS L W R+ + ILR V EL+ +P V I+E + I Sbjct: 53 GVENNKDNIDESISKNLC-NWKIDRISKVNLCILRLAVYELLHDEEIPNRVAINEALEIT 111 Query: 135 HDFFYGDEPKFINAVLDKVSRK 156 + F+N VLD + +K Sbjct: 112 KKYSDEKSVSFVNGVLDNILKK 133 >gi|189499470|ref|YP_001958940.1| NusB antitermination factor [Chlorobium phaeobacteroides BS1] gi|238692264|sp|B3EM81|NUSB_CHLPB RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|189494911|gb|ACE03459.1| NusB antitermination factor [Chlorobium phaeobacteroides BS1] Length = 168 Score = 145 bits (366), Expect = 3e-33, Method: Composition-based stats. Identities = 42/159 (26%), Positives = 72/159 (45%), Gaps = 16/159 (10%) Query: 10 LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF 69 +K RR R +QALY I++ G T + D+ + ++ Sbjct: 1 MKTYRRR--IREKIIQALYTIELTGADMDSASDWLITPQIAEDS----------GAVRFY 48 Query: 70 RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISE 129 + ++ + D K+ ID I+ T W SR+ +I +ILR + EL+ +P +V I+E Sbjct: 49 KQVLQSIQDHKEEIDGYITKH-TFNWDMSRIAIIDKNILRMALAELLYFEDIPPKVSINE 107 Query: 130 YVCIAHDF-FYGDEPKFINAVLDKVSRKEEIKRSGCVSA 167 + IA F KF+N +LD + ++K SG + Sbjct: 108 AIEIAKKFNSTDKSSKFVNGILD--ATYNDLKSSGKIKK 144 >gi|163747437|ref|ZP_02154789.1| transcription antitermination factor NusB [Oceanibulbus indolifex HEL-45] gi|161379290|gb|EDQ03707.1| transcription antitermination factor NusB [Oceanibulbus indolifex HEL-45] Length = 158 Score = 145 bits (366), Expect = 3e-33, Method: Composition-based stats. Identities = 48/157 (30%), Positives = 81/157 (51%), Gaps = 10/157 (6%) Query: 5 DNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHV 64 + K+ +K +RL AVQAL+Q++ + + E+ +RF A E D Sbjct: 9 NQKRKMK-----SASRLYAVQALFQMEHSAQTVDVVRHEFIDHRFGAVYEGDE---MQEG 60 Query: 65 DLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVE 124 D++ F ++ ++ + ID + + + KW+ +R+D L ++ RA E P Sbjct: 61 DVDHFSRVLEDAVNYQAPIDQMANRAIVAKWAIARIDPTLRALFRAAGAEFRH-DETPPR 119 Query: 125 VIISEYVCIAHDFF-YGDEPKFINAVLDKVSRKEEIK 160 V+I EYV +AH FF G EP F+NAVLD ++R+ + Sbjct: 120 VVIKEYVDVAHAFFPEGREPSFVNAVLDHMAREARPE 156 >gi|193214274|ref|YP_001995473.1| NusB antitermination factor [Chloroherpeton thalassium ATCC 35110] gi|238692701|sp|B3QV72|NUSB_CHLT3 RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|193087751|gb|ACF13026.1| NusB antitermination factor [Chloroherpeton thalassium ATCC 35110] Length = 211 Score = 145 bits (366), Expect = 3e-33, Method: Composition-based stats. Identities = 35/152 (23%), Positives = 65/152 (42%), Gaps = 13/152 (8%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 R R A+Q LY ++ ++ AD + ++ II+ Sbjct: 5 RRQIRELAMQVLYAYEVRKEKVDKVAKGIIPEDVVADIKA----------KDFIFKIINS 54 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135 V+ Q ID I+ + W +R+ +I +++R + E++ VP +V I+E + IA Sbjct: 55 VIQNIQDIDTHIAKH-ADNWELNRMAIIDKNLMRIAIAEMLYLDDVPPKVSINEAIEIAK 113 Query: 136 DFFYGDEPKFINAVLDKVSRKEEIKRSGCVSA 167 + KF+N +LD + E+K G + Sbjct: 114 RYSTDKSSKFVNGILD--ATYNEVKSKGVLHK 143 >gi|251778082|ref|ZP_04821002.1| transcription antitermination factor NusB [Clostridium botulinum E1 str. 'BoNT E Beluga'] gi|243082397|gb|EES48287.1| transcription antitermination factor NusB [Clostridium botulinum E1 str. 'BoNT E Beluga'] Length = 133 Score = 144 bits (365), Expect = 3e-33, Method: Composition-based stats. Identities = 37/142 (26%), Positives = 64/142 (45%), Gaps = 10/142 (7%) Query: 15 RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74 R ++R A++ L+ + + + E + + + ES +D+ + + I+ Sbjct: 2 NRKLSREKAMELLFGMTLNTDNCEETLENFID---------NYESDIKELDITYIKRILI 52 Query: 75 GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134 GV + K +ID IS L W R+ + ILR V EL+ +P V I+E + I Sbjct: 53 GVENNKDNIDEAISKNLC-NWKIDRISKVNLCILRLAVYELLHDEEIPNRVAINEALEIT 111 Query: 135 HDFFYGDEPKFINAVLDKVSRK 156 + FIN VLD + +K Sbjct: 112 KKYSDEKSVSFINGVLDNILKK 133 >gi|256832560|ref|YP_003161287.1| NusB antitermination factor [Jonesia denitrificans DSM 20603] gi|256686091|gb|ACV08984.1| NusB antitermination factor [Jonesia denitrificans DSM 20603] Length = 138 Score = 144 bits (365), Expect = 3e-33, Method: Composition-based stats. Identities = 34/138 (24%), Positives = 59/138 (42%), Gaps = 12/138 (8%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 R AR AV LY+ D S +++ + ++ ++ G Sbjct: 4 RSKARKRAVNILYEADQRNLSAAQVLDIRLA-----------DPGVPSALPQYAVDLVEG 52 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135 V+ ++ ID ++ + + W R+ + +ILR G EL+ VP V I E V +A Sbjct: 53 VILHRERIDEILETY-SRGWPLRRMPAVDRAILRLGTWELLYNDDVPDIVAIDEAVDLAR 111 Query: 136 DFFYGDEPKFINAVLDKV 153 + D P F+N +L +V Sbjct: 112 ELSTEDSPSFVNGLLGRV 129 >gi|330838907|ref|YP_004413487.1| NusB antitermination factor [Selenomonas sputigena ATCC 35185] gi|329746671|gb|AEC00028.1| NusB antitermination factor [Selenomonas sputigena ATCC 35185] Length = 140 Score = 144 bits (365), Expect = 3e-33, Method: Composition-based stats. Identities = 35/141 (24%), Positives = 64/141 (45%), Gaps = 4/141 (2%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 R AR AA+Q L+Q+++ +E SE + D ++ V D + ++ G Sbjct: 3 RRQAREAALQTLFQLELN--PPSEAASEEACQMWALDAAVEEMPVETKRDYSYAASLVRG 60 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIE-CHSVPVEVIISEYVCIA 134 + ID I+ T W R+ + +I+R + E+ V V + I+E V +A Sbjct: 61 TREHLAAIDEEIA-ASTHDWKLDRMTGVDRNIVRIALYEMKYGAEKVDVGIAINEAVELA 119 Query: 135 HDFFYGDEPKFINAVLDKVSR 155 F D +++N +L ++R Sbjct: 120 KKFGTDDSSRYVNGILGGLAR 140 >gi|71909351|ref|YP_286938.1| NusB antitermination factor [Dechloromonas aromatica RCB] gi|119390763|sp|Q479L3|NUSB_DECAR RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|71848972|gb|AAZ48468.1| NusB antitermination factor [Dechloromonas aromatica RCB] Length = 163 Score = 144 bits (365), Expect = 3e-33, Method: Composition-based stats. Identities = 42/172 (24%), Positives = 74/172 (43%), Gaps = 18/172 (10%) Query: 1 MTIQDNKKDLKLSHR--RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVE 58 ++ ++ +D+K + R AR +Q LYQ + G I + Sbjct: 5 LSDSEHPQDVKAPPKSARRRAREFVLQGLYQWRVGGADEASIEAY-----------APEM 53 Query: 59 SVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIEC 118 + D E+F + GV+ +++ + +S+ + F+ L + IL G E++ Sbjct: 54 EGFAKADREFFVGTLRGVISQQEKLIEQVSTHIDR--PFNELSPVEACILMLGSFEMLNH 111 Query: 119 HSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRSGCVSAITQ 170 P VII+E + + F D K++N VLDKV+ I R V+A Q Sbjct: 112 AETPYRVIINEAIELTKAFGGTDGHKYVNGVLDKVA---AILRPDEVAARKQ 160 >gi|260887340|ref|ZP_05898603.1| transcription antitermination factor NusB [Selenomonas sputigena ATCC 35185] gi|260862976|gb|EEX77476.1| transcription antitermination factor NusB [Selenomonas sputigena ATCC 35185] Length = 160 Score = 144 bits (365), Expect = 3e-33, Method: Composition-based stats. Identities = 35/141 (24%), Positives = 64/141 (45%), Gaps = 4/141 (2%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 R AR AA+Q L+Q+++ +E SE + D ++ V D + ++ G Sbjct: 23 RRQAREAALQTLFQLELN--PPSEAASEEACQMWALDAAVEEMPVETKRDYSYAASLVRG 80 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIE-CHSVPVEVIISEYVCIA 134 + ID I+ T W R+ + +I+R + E+ V V + I+E V +A Sbjct: 81 TREHLAAIDEEIA-ASTHDWKLDRMTGVDRNIVRIALYEMKYGAEKVDVGIAINEAVELA 139 Query: 135 HDFFYGDEPKFINAVLDKVSR 155 F D +++N +L ++R Sbjct: 140 KKFGTDDSSRYVNGILGGLAR 160 >gi|332670495|ref|YP_004453503.1| NusB antitermination factor [Cellulomonas fimi ATCC 484] gi|332339533|gb|AEE46116.1| NusB antitermination factor [Cellulomonas fimi ATCC 484] Length = 138 Score = 144 bits (365), Expect = 3e-33, Method: Composition-based stats. Identities = 30/139 (21%), Positives = 61/139 (43%), Gaps = 12/139 (8%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 R AR A+ L++ D G ++++ E ++ ++ G Sbjct: 4 RTKARKRALDVLFEADQRGLDPVTLLAQRVA-----------EPGTEAALPQYSVDLVEG 52 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135 V+ R++ ID L+++ W+ R+ + ++LR G E++ VP V + E V +A Sbjct: 53 VIARRERIDELLATH-AHGWTIERMPAVDRALLRLGTWEILFNDDVPDAVAVDEAVELAR 111 Query: 136 DFFYGDEPKFINAVLDKVS 154 + P F+N +L ++ Sbjct: 112 SLSTDESPSFVNGLLGRIV 130 >gi|82751129|ref|YP_416870.1| transcription antitermination protein NusB [Staphylococcus aureus RF122] gi|119390829|sp|Q2YYB7|NUSB_STAAB RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|82656660|emb|CAI81086.1| probable N utilization substance protein B [Staphylococcus aureus RF122] Length = 129 Score = 144 bits (365), Expect = 3e-33, Method: Composition-based stats. Identities = 38/140 (27%), Positives = 64/140 (45%), Gaps = 13/140 (9%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 R +R+ A Q L+Q+++ ++ E F D D+ D E+ ++ G Sbjct: 3 RKESRVQAFQTLFQLEMKDSD----LTINEAISFIKDGNPDL-------DFEFIHWLVSG 51 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135 V D + +D IS L + W+ +RL ILR E++ P +V+++E V + Sbjct: 52 VKDHEPVLDETISPYL-KDWTIARLLKTDRIILRMATYEILHS-DTPAKVVMNEAVELTK 109 Query: 136 DFFYGDEPKFINAVLDKVSR 155 F D KFIN VL + + Sbjct: 110 QFSDDDHYKFINGVLSNIKK 129 >gi|319760371|ref|YP_004124309.1| N utilization substance protein B-like protein [Candidatus Blochmannia vafer str. BVAF] gi|318039085|gb|ADV33635.1| N utilization substance protein B-like protein [Candidatus Blochmannia vafer str. BVAF] Length = 140 Score = 144 bits (365), Expect = 3e-33, Method: Composition-based stats. Identities = 36/142 (25%), Positives = 66/142 (46%), Gaps = 13/142 (9%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 R +ARL A+QALY EI + + + + D+ +FR + G Sbjct: 6 RRLARLCALQALYSWQFSKNDLIEIENYIVSIQNIQNF-----------DISYFRELYIG 54 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135 V++ +D L+ L + + S+L + EL +C+ +P +V+++E + +A Sbjct: 55 VINCISDLDKLMIPYLFR--DLKTIGYVEYSVLLIALFELTQCYDIPYKVVMNEAIELAK 112 Query: 136 DFFYGDEPKFINAVLDKVSRKE 157 F KFIN VL+K+ ++ Sbjct: 113 IFGSEKSYKFINGVLNKIVTEK 134 >gi|121534502|ref|ZP_01666325.1| NusB antitermination factor [Thermosinus carboxydivorans Nor1] gi|121306995|gb|EAX47914.1| NusB antitermination factor [Thermosinus carboxydivorans Nor1] Length = 141 Score = 144 bits (365), Expect = 3e-33, Method: Composition-based stats. Identities = 32/146 (21%), Positives = 63/146 (43%), Gaps = 12/146 (8%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 R AR A+Q L+Q+D ++ R E+ R ++ G Sbjct: 3 RRKAREIALQTLFQLDFNDTDPVAALAALVQDR----------DDVSKNAQEYARQLVTG 52 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIE-CHSVPVEVIISEYVCIA 134 D ID +I+ ++W R+ + +I+R + E+ +P V+I+E V +A Sbjct: 53 TKDHLAEIDAIIAGQ-AKEWKLERMAGVDRNIVRMAIYEMRYGQEKLPPNVVINEAVELA 111 Query: 135 HDFFYGDEPKFINAVLDKVSRKEEIK 160 F + +F+N +L + +K+ ++ Sbjct: 112 KIFSTEESGRFVNGILGALVKKKALQ 137 >gi|78187533|ref|YP_375576.1| NusB antitermination factor [Chlorobium luteolum DSM 273] gi|119390794|sp|Q3B298|NUSB_PELLD RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|78167435|gb|ABB24533.1| NusB antitermination factor [Chlorobium luteolum DSM 273] Length = 163 Score = 144 bits (365), Expect = 3e-33, Method: Composition-based stats. Identities = 39/153 (25%), Positives = 68/153 (44%), Gaps = 14/153 (9%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 R R +QALY +++ T D +++F +++ Sbjct: 5 RRQIREKILQALYTLELRETDIESAAGWLLTPEILEDPNA----------MKFFNLLLKS 54 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135 + D ++ ID I++ T W SR+ +I +ILR + EL+ C +P +V I+E + IA Sbjct: 55 IKDNREEIDRYIAAH-TFNWDMSRIAIIDKNILRMALAELLYCEDIPPKVSINEAIEIAK 113 Query: 136 DF-FYGDEPKFINAVLDKVSRKEEIKRSGCVSA 167 F KF+N +LD + E+K G + Sbjct: 114 KFNSTDKSSKFVNGILDAIF--NELKTEGKIKK 144 >gi|330685971|gb|EGG97594.1| transcription antitermination factor NusB [Staphylococcus epidermidis VCU121] Length = 128 Score = 144 bits (365), Expect = 3e-33, Method: Composition-based stats. Identities = 40/138 (28%), Positives = 62/138 (44%), Gaps = 13/138 (9%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 R +R+ A Q L+Q++I ++ E F D Y +D ++ ++ G Sbjct: 3 RKESRVQAFQTLFQLEIKDTD----LTIKEAINFIKD-------DYPDLDFDFINWLVTG 51 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135 V D + +D I L + WS RL ILR E++ P +V+I+E V +A Sbjct: 52 VKDHEPVLDEKIKPYL-KDWSLERLLKTDRIILRMATFEILHS-DTPAKVVINEAVELAK 109 Query: 136 DFFYGDEPKFINAVLDKV 153 F D KFIN VL + Sbjct: 110 QFSDDDHYKFINGVLSNI 127 >gi|327439755|dbj|BAK16120.1| transcription termination factor [Solibacillus silvestris StLB046] Length = 128 Score = 144 bits (365), Expect = 3e-33, Method: Composition-based stats. Identities = 38/142 (26%), Positives = 64/142 (45%), Gaps = 15/142 (10%) Query: 15 RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74 +R AR A+QAL+Q+D + E I ++ + ++ Sbjct: 2 KRTEARQKALQALFQLDSTELTIEEAIGHVLEEEQKSN--------------AFLEQLVR 47 Query: 75 GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134 G + + ID + L EKW+ +RL I +ILR V EL+ P +VI++E + ++ Sbjct: 48 GTTENIEAIDAALEKNL-EKWTINRLPKIERTILRLAVYELLYAEETPNKVIMNEAIELS 106 Query: 135 HDFFYGDEPKFINAVLDKVSRK 156 F KF+N VL K + + Sbjct: 107 KTFGDEKSSKFVNGVLSKFTEQ 128 >gi|285019596|ref|YP_003377307.1| transcription termination factor NusB [Xanthomonas albilineans GPE PC73] gi|283474814|emb|CBA17313.1| putative transcription termination factor nusb protein [Xanthomonas albilineans] Length = 155 Score = 144 bits (365), Expect = 3e-33, Method: Composition-based stats. Identities = 33/139 (23%), Positives = 60/139 (43%), Gaps = 13/139 (9%) Query: 25 QALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHID 84 QA+Y I G + +I+++ E + DL +F ++ GV+ + +D Sbjct: 29 QAIYAWQISGGNAQHVIAQFAH-----------EQAHEIADLVYFENLVEGVLKHRAELD 77 Query: 85 LLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPK 144 + L + +D I ++LR EL+ VP V+I+E + A F Sbjct: 78 AALVGYLDR--TVEEVDAIERAVLRLAAYELLYRMDVPYRVVINEAIETAKRFGSEHGHT 135 Query: 145 FINAVLDKVSRKEEIKRSG 163 ++N VLD+ + + SG Sbjct: 136 YVNGVLDRAALEWRAVESG 154 >gi|262371010|ref|ZP_06064333.1| transcription termination L factor [Acinetobacter johnsonii SH046] gi|262314086|gb|EEY95130.1| transcription termination L factor [Acinetobacter johnsonii SH046] Length = 152 Score = 144 bits (365), Expect = 3e-33, Method: Composition-based stats. Identities = 38/139 (27%), Positives = 64/139 (46%), Gaps = 13/139 (9%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 + AR AVQ +Y+ + EI + VE+ VDL ++ ++ Sbjct: 12 KRKARRFAVQGIYEWQMSHNPVHEIEA-----------RTRVENAMHKVDLSYYHELLTQ 60 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135 V+ + +D L+ L + S LD + + LR G EL E +P V++ E + +A Sbjct: 61 VVANHEALDALLIPVLDRE--VSALDGVELATLRLGAYELKEHLEIPYRVVLDEAIELAK 118 Query: 136 DFFYGDEPKFINAVLDKVS 154 F D K+IN VLD+++ Sbjct: 119 HFGGADSHKYINGVLDRLA 137 >gi|312438007|gb|ADQ77078.1| transcription antitermination factor NusB [Staphylococcus aureus subsp. aureus TCH60] Length = 132 Score = 144 bits (365), Expect = 3e-33, Method: Composition-based stats. Identities = 40/143 (27%), Positives = 65/143 (45%), Gaps = 13/143 (9%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 R +R+ A Q L+Q+++ ++ E F D D+ D E+ ++ G Sbjct: 3 RKESRVQAFQTLFQLEMKDSD----LTINEAISFIKDDNPDL-------DFEFIHWLVSG 51 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135 V D + +D IS L + W+ +RL ILR E++ P +V+++E V + Sbjct: 52 VKDHEPVLDETISPYL-KDWTIARLLKTDRIILRMATYEILHS-DTPAKVVMNEAVELTK 109 Query: 136 DFFYGDEPKFINAVLDKVSRKEE 158 F D KFIN VL + K E Sbjct: 110 QFSDDDHYKFINGVLSNIKNKIE 132 >gi|239637666|ref|ZP_04678638.1| transcription antitermination factor NusB [Staphylococcus warneri L37603] gi|239596884|gb|EEQ79409.1| transcription antitermination factor NusB [Staphylococcus warneri L37603] Length = 128 Score = 144 bits (365), Expect = 3e-33, Method: Composition-based stats. Identities = 40/138 (28%), Positives = 62/138 (44%), Gaps = 13/138 (9%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 R +R+ A Q L+Q++I ++ E F D Y +D ++ ++ G Sbjct: 3 RKESRVQAFQTLFQLEIKDTD----LTIKEAINFIKD-------DYPDLDFDFINWLVTG 51 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135 V D + +D I L + WS RL ILR E++ P +V+I+E V +A Sbjct: 52 VKDHEPVLDEKIKPYL-KDWSLERLLKTDRIILRMATFEILHS-DTPSKVVINEAVELAK 109 Query: 136 DFFYGDEPKFINAVLDKV 153 F D KFIN VL + Sbjct: 110 QFSDDDHYKFINGVLSNI 127 >gi|315639636|ref|ZP_07894776.1| N utilization substance protein B [Enterococcus italicus DSM 15952] gi|315484597|gb|EFU75053.1| N utilization substance protein B [Enterococcus italicus DSM 15952] Length = 150 Score = 144 bits (364), Expect = 4e-33, Method: Composition-based stats. Identities = 35/150 (23%), Positives = 64/150 (42%), Gaps = 3/150 (2%) Query: 10 LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF 69 + R R AVQ+L+ +D + + + D + E ++ ++ Sbjct: 1 MSKELSRHDIREMAVQSLFPLDFSTEFSKQDAIAHAIEVNQYDLLDEEEENFVP---DYL 57 Query: 70 RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISE 129 ++ GV + K +D I S L W RL + +ILR + E+ VP +V+++E Sbjct: 58 DWLVSGVCEHKNELDKEIESFLRPGWKIGRLAKMDVTILRLAIFEMQHAEDVPNKVVLNE 117 Query: 130 YVCIAHDFFYGDEPKFINAVLDKVSRKEEI 159 + + F KF+N VL ++ K E Sbjct: 118 AIELTKTFSDDQSRKFVNGVLSSINNKLEA 147 >gi|302525862|ref|ZP_07278204.1| transcription antitermination factor NusB [Streptomyces sp. AA4] gi|302434757|gb|EFL06573.1| transcription antitermination factor NusB [Streptomyces sp. AA4] Length = 152 Score = 144 bits (364), Expect = 4e-33, Method: Composition-based stats. Identities = 34/138 (24%), Positives = 65/138 (47%), Gaps = 13/138 (9%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 R AR AV+ LY+ ++++ V +V + ++ ++ G Sbjct: 17 RRQARRRAVEMLYEAAQRSADPVTLLAD------------RVGAVEVDPVADYTITVVEG 64 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135 V ++ ID L++ ++ W+ R+ + ++LR GV E++ VP V I E V +A Sbjct: 65 VTAHRERIDELLAEH-SQGWTLERMPPVDLAVLRVGVYEMLWSADVPDAVAIDEAVGLAK 123 Query: 136 DFFYGDEPKFINAVLDKV 153 + D P+F+N VL ++ Sbjct: 124 ELSTDDSPRFVNGVLGRI 141 >gi|270308448|ref|YP_003330506.1| transcription antitermination factor NusB [Dehalococcoides sp. VS] gi|270154340|gb|ACZ62178.1| transcription antitermination factor NusB [Dehalococcoides sp. VS] Length = 143 Score = 144 bits (364), Expect = 4e-33, Method: Composition-based stats. Identities = 39/144 (27%), Positives = 68/144 (47%), Gaps = 12/144 (8%) Query: 12 LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71 ++ R AR +QALY+ D+ G + +++ T E+ + E+ Sbjct: 1 MTTSRRKAREIVLQALYEQDLAGHNAEDVLRRLLT-----------ETPQTEENTEFIFR 49 Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131 + + V+ K+ +D I + W +L I ++LR + E+I + VPV+V I+E V Sbjct: 50 LTNAVVKHKELLDENIRQFASA-WPVEQLSYIDRNVLRLAIFEIIHENDVPVKVAINEAV 108 Query: 132 CIAHDFFYGDEPKFINAVLDKVSR 155 +A F +FIN VL VS+ Sbjct: 109 ELAKSFGGNSSARFINGVLSSVSK 132 >gi|56964231|ref|YP_175962.1| transcription antitermination protein NusB [Bacillus clausii KSM-K16] gi|81600830|sp|Q5WF59|NUSB_BACSK RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|56910474|dbj|BAD65001.1| N utilization substance protein NusB [Bacillus clausii KSM-K16] Length = 133 Score = 144 bits (364), Expect = 4e-33, Method: Composition-based stats. Identities = 39/138 (28%), Positives = 66/138 (47%), Gaps = 15/138 (10%) Query: 15 RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74 R +ARL AVQ LYQ+ +I + + I D E E ++ ++H Sbjct: 2 NRRVARLRAVQTLYQLTLIDINVDKAIE-----NTLNDEEEPSE---------FYNTLVH 47 Query: 75 GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134 G ++ + ID +S L + ++ RL + +I R G+ E++ +PV V ++E + +A Sbjct: 48 GTLEHQDEIDGYLSENL-KGYTLDRLGHVDRAIARMGLFEMLYLDDIPVNVTLNEAIELA 106 Query: 135 HDFFYGDEPKFINAVLDK 152 F D +FIN VL Sbjct: 107 KAFGGTDAGRFINGVLSN 124 >gi|306834238|ref|ZP_07467357.1| transcription antitermination factor NusB [Streptococcus bovis ATCC 700338] gi|304423587|gb|EFM26734.1| transcription antitermination factor NusB [Streptococcus bovis ATCC 700338] Length = 142 Score = 144 bits (364), Expect = 4e-33, Method: Composition-based stats. Identities = 34/144 (23%), Positives = 58/144 (40%), Gaps = 7/144 (4%) Query: 11 KLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFR 70 ++ R R A QAL+ ++ G +F + +E + Sbjct: 4 NFTNSRRDLRERAFQALFSLEFGGEYLAAA-------QFAYTYDKTIEEDDTIDVPVFLL 56 Query: 71 VIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEY 130 ++ GV D K ID I + L WS RL + ++LR G+ E+ P V ++E Sbjct: 57 NLVKGVQDLKFEIDQQIETHLKSGWSLERLTLTDRALLRLGLYEIKYFEETPGRVAVNEI 116 Query: 131 VCIAHDFFYGDEPKFINAVLDKVS 154 + IA + KF+N +L + Sbjct: 117 IEIAKKYSDDTSAKFVNGLLSQFV 140 >gi|253314894|ref|ZP_04838107.1| transcription antitermination protein NusB [Staphylococcus aureus subsp. aureus str. CF-Marseille] Length = 129 Score = 144 bits (364), Expect = 4e-33, Method: Composition-based stats. Identities = 38/140 (27%), Positives = 64/140 (45%), Gaps = 13/140 (9%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 R +R+ A Q L+Q+++ ++ E F D D+ D E+ ++ G Sbjct: 3 RKESRVQAFQTLFQLEMKDSD----LTINEAISFINDDNPDL-------DFEFIHWLVSG 51 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135 V D + +D IS L + W+ +RL ILR E++ P +V+++E V + Sbjct: 52 VKDHEPVLDETISPYL-KDWTIARLLKTDRIILRMATYEILHS-DTPAKVVMNEAVELTK 109 Query: 136 DFFYGDEPKFINAVLDKVSR 155 F D KFIN VL + + Sbjct: 110 QFSDDDHYKFINGVLSNIKK 129 >gi|15924514|ref|NP_372048.1| transcription antitermination protein NusB [Staphylococcus aureus subsp. aureus Mu50] gi|15927105|ref|NP_374638.1| transcription antitermination protein NusB [Staphylococcus aureus subsp. aureus N315] gi|21283206|ref|NP_646294.1| transcription antitermination protein NusB [Staphylococcus aureus subsp. aureus MW2] gi|49486361|ref|YP_043582.1| transcription antitermination protein NusB [Staphylococcus aureus subsp. aureus MSSA476] gi|57650481|ref|YP_186410.1| transcription antitermination protein NusB [Staphylococcus aureus subsp. aureus COL] gi|88195331|ref|YP_500135.1| transcription antitermination protein NusB [Staphylococcus aureus subsp. aureus NCTC 8325] gi|148268009|ref|YP_001246952.1| transcription antitermination protein NusB [Staphylococcus aureus subsp. aureus JH9] gi|150394076|ref|YP_001316751.1| transcription antitermination protein NusB [Staphylococcus aureus subsp. aureus JH1] gi|151221641|ref|YP_001332463.1| transcription antitermination protein NusB [Staphylococcus aureus subsp. aureus str. Newman] gi|156979843|ref|YP_001442102.1| transcription antitermination protein NusB [Staphylococcus aureus subsp. aureus Mu3] gi|221140055|ref|ZP_03564548.1| transcription antitermination protein NusB [Staphylococcus aureus subsp. aureus str. JKD6009] gi|253732178|ref|ZP_04866343.1| transcription antitermination protein NusB [Staphylococcus aureus subsp. aureus USA300_TCH959] gi|253733226|ref|ZP_04867391.1| transcription antitermination protein NusB [Staphylococcus aureus subsp. aureus TCH130] gi|255006311|ref|ZP_05144912.2| transcription antitermination protein NusB [Staphylococcus aureus subsp. aureus Mu50-omega] gi|257425650|ref|ZP_05602074.1| transcription antitermination protein NusB [Staphylococcus aureus subsp. aureus 55/2053] gi|257428311|ref|ZP_05604709.1| transcription antitermination protein NusB [Staphylococcus aureus subsp. aureus 65-1322] gi|257430948|ref|ZP_05607328.1| transcription antitermination protein NusB [Staphylococcus aureus subsp. aureus 68-397] gi|257433637|ref|ZP_05609995.1| transcription antitermination protein NusB [Staphylococcus aureus subsp. aureus E1410] gi|257436550|ref|ZP_05612594.1| transcription antitermination factor NusB [Staphylococcus aureus subsp. aureus M876] gi|257793601|ref|ZP_05642580.1| transcription antitermination factor NusB [Staphylococcus aureus A9781] gi|258411099|ref|ZP_05681379.1| transcription antitermination protein NusB [Staphylococcus aureus A9763] gi|258420097|ref|ZP_05683052.1| transcription antitermination factor NusB [Staphylococcus aureus A9719] gi|258423178|ref|ZP_05686071.1| transcription antitermination factor NusB [Staphylococcus aureus A9635] gi|258437357|ref|ZP_05689341.1| transcription antitermination protein NusB [Staphylococcus aureus A9299] gi|258443563|ref|ZP_05691902.1| transcription antitermination protein NusB [Staphylococcus aureus A8115] gi|258446770|ref|ZP_05694924.1| transcription antitermination protein NusB [Staphylococcus aureus A6300] gi|258448684|ref|ZP_05696796.1| transcription antitermination protein NusB [Staphylococcus aureus A6224] gi|258451182|ref|ZP_05699217.1| transcription antitermination protein NusB [Staphylococcus aureus A5948] gi|258453501|ref|ZP_05701479.1| transcription antitermination protein NusB [Staphylococcus aureus A5937] gi|262051191|ref|ZP_06023415.1| transcription antitermination protein NusB [Staphylococcus aureus 930918-3] gi|269203154|ref|YP_003282423.1| transcription antitermination protein NusB [Staphylococcus aureus subsp. aureus ED98] gi|282893026|ref|ZP_06301260.1| transcription antitermination factor NusB [Staphylococcus aureus A8117] gi|282911163|ref|ZP_06318965.1| transcription antitermination factor NusB [Staphylococcus aureus subsp. aureus WBG10049] gi|282914332|ref|ZP_06322118.1| N utilization substance protein B [Staphylococcus aureus subsp. aureus M899] gi|282916795|ref|ZP_06324553.1| transcription antitermination factor NusB [Staphylococcus aureus subsp. aureus D139] gi|282919301|ref|ZP_06327036.1| transcription antitermination factor NusB [Staphylococcus aureus subsp. aureus C427] gi|282924626|ref|ZP_06332294.1| transcription antitermination factor NusB [Staphylococcus aureus subsp. aureus C101] gi|282924773|ref|ZP_06332440.1| transcription antitermination factor NusB [Staphylococcus aureus A9765] gi|282928996|ref|ZP_06336583.1| transcription antitermination factor NusB [Staphylococcus aureus A10102] gi|283770601|ref|ZP_06343493.1| N utilization substance protein B [Staphylococcus aureus subsp. aureus H19] gi|284024584|ref|ZP_06378982.1| transcription antitermination protein NusB [Staphylococcus aureus subsp. aureus 132] gi|293503407|ref|ZP_06667254.1| transcription antitermination factor NusB [Staphylococcus aureus subsp. aureus 58-424] gi|293510423|ref|ZP_06669129.1| transcription antitermination factor NusB [Staphylococcus aureus subsp. aureus M809] gi|293530963|ref|ZP_06671645.1| N utilization substance protein B [Staphylococcus aureus subsp. aureus M1015] gi|295406647|ref|ZP_06816452.1| transcription antitermination factor NusB [Staphylococcus aureus A8819] gi|296275119|ref|ZP_06857626.1| transcription antitermination protein NusB [Staphylococcus aureus subsp. aureus MR1] gi|297207756|ref|ZP_06924191.1| transcription antitermination factor NusB [Staphylococcus aureus subsp. aureus ATCC 51811] gi|297245770|ref|ZP_06929635.1| transcription antitermination factor NusB [Staphylococcus aureus A8796] gi|300911837|ref|ZP_07129280.1| transcription antitermination factor NusB [Staphylococcus aureus subsp. aureus TCH70] gi|304380887|ref|ZP_07363547.1| transcription antitermination factor NusB [Staphylococcus aureus subsp. aureus ATCC BAA-39] gi|54037923|sp|P65578|NUSB_STAAN RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|54037924|sp|P65579|NUSB_STAAW RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|54041674|sp|P65577|NUSB_STAAM RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|56749194|sp|Q6G941|NUSB_STAAS RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|71153022|sp|Q5HFP7|NUSB_STAAC RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|119390828|sp|Q2FY45|NUSB_STAA8 RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|166215722|sp|A7X2Q3|NUSB_STAA1 RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|172048899|sp|A6QH69|NUSB_STAAE RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|189035909|sp|A6U1Z6|NUSB_STAA2 RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|189035910|sp|A5IT53|NUSB_STAA9 RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|13701323|dbj|BAB42617.1| SA1355 [Staphylococcus aureus subsp. aureus N315] gi|14247295|dbj|BAB57686.1| N utilization substance protein B homolog [Staphylococcus aureus subsp. aureus Mu50] gi|21204646|dbj|BAB95342.1| MW1477 [Staphylococcus aureus subsp. aureus MW2] gi|49244804|emb|CAG43254.1| putative N utilization substance protein B [Staphylococcus aureus subsp. aureus MSSA476] gi|57284667|gb|AAW36761.1| N utilization substance protein B [Staphylococcus aureus subsp. aureus COL] gi|87202889|gb|ABD30699.1| N utilization substance protein B, putative [Staphylococcus aureus subsp. aureus NCTC 8325] gi|147741078|gb|ABQ49376.1| NusB antitermination factor [Staphylococcus aureus subsp. aureus JH9] gi|149946528|gb|ABR52464.1| transcription antitermination factor NusB [Staphylococcus aureus subsp. aureus JH1] gi|150374441|dbj|BAF67701.1| transcription antitermination protein NusB [Staphylococcus aureus subsp. aureus str. Newman] gi|156721978|dbj|BAF78395.1| hypothetical protein [Staphylococcus aureus subsp. aureus Mu3] gi|253723967|gb|EES92696.1| transcription antitermination protein NusB [Staphylococcus aureus subsp. aureus USA300_TCH959] gi|253728766|gb|EES97495.1| transcription antitermination protein NusB [Staphylococcus aureus subsp. aureus TCH130] gi|257271344|gb|EEV03490.1| transcription antitermination protein NusB [Staphylococcus aureus subsp. aureus 55/2053] gi|257275152|gb|EEV06639.1| transcription antitermination protein NusB [Staphylococcus aureus subsp. aureus 65-1322] gi|257278378|gb|EEV09014.1| transcription antitermination protein NusB [Staphylococcus aureus subsp. aureus 68-397] gi|257281730|gb|EEV11867.1| transcription antitermination protein NusB [Staphylococcus aureus subsp. aureus E1410] gi|257283901|gb|EEV14024.1| transcription antitermination factor NusB [Staphylococcus aureus subsp. aureus M876] gi|257787573|gb|EEV25913.1| transcription antitermination factor NusB [Staphylococcus aureus A9781] gi|257840249|gb|EEV64713.1| transcription antitermination protein NusB [Staphylococcus aureus A9763] gi|257843808|gb|EEV68202.1| transcription antitermination factor NusB [Staphylococcus aureus A9719] gi|257846628|gb|EEV70649.1| transcription antitermination factor NusB [Staphylococcus aureus A9635] gi|257848562|gb|EEV72550.1| transcription antitermination protein NusB [Staphylococcus aureus A9299] gi|257850969|gb|EEV74912.1| transcription antitermination protein NusB [Staphylococcus aureus A8115] gi|257854345|gb|EEV77294.1| transcription antitermination protein NusB [Staphylococcus aureus A6300] gi|257857962|gb|EEV80851.1| transcription antitermination protein NusB [Staphylococcus aureus A6224] gi|257861237|gb|EEV84050.1| transcription antitermination protein NusB [Staphylococcus aureus A5948] gi|257864232|gb|EEV86982.1| transcription antitermination protein NusB [Staphylococcus aureus A5937] gi|259160828|gb|EEW45848.1| transcription antitermination protein NusB [Staphylococcus aureus 930918-3] gi|262075444|gb|ACY11417.1| transcription antitermination protein NusB [Staphylococcus aureus subsp. aureus ED98] gi|269941015|emb|CBI49399.1| putative N utilization substance protein B [Staphylococcus aureus subsp. aureus TW20] gi|282313461|gb|EFB43856.1| transcription antitermination factor NusB [Staphylococcus aureus subsp. aureus C101] gi|282317111|gb|EFB47485.1| transcription antitermination factor NusB [Staphylococcus aureus subsp. aureus C427] gi|282319282|gb|EFB49634.1| transcription antitermination factor NusB [Staphylococcus aureus subsp. aureus D139] gi|282321513|gb|EFB51838.1| N utilization substance protein B [Staphylococcus aureus subsp. aureus M899] gi|282324858|gb|EFB55168.1| transcription antitermination factor NusB [Staphylococcus aureus subsp. aureus WBG10049] gi|282589403|gb|EFB94494.1| transcription antitermination factor NusB [Staphylococcus aureus A10102] gi|282592780|gb|EFB97786.1| transcription antitermination factor NusB [Staphylococcus aureus A9765] gi|282764344|gb|EFC04470.1| transcription antitermination factor NusB [Staphylococcus aureus A8117] gi|283460748|gb|EFC07838.1| N utilization substance protein B [Staphylococcus aureus subsp. aureus H19] gi|283470803|emb|CAQ50014.1| transcription antitermination factor NusB [Staphylococcus aureus subsp. aureus ST398] gi|285817207|gb|ADC37694.1| Transcription termination protein NusB [Staphylococcus aureus 04-02981] gi|290920231|gb|EFD97297.1| N utilization substance protein B [Staphylococcus aureus subsp. aureus M1015] gi|291095073|gb|EFE25338.1| transcription antitermination factor NusB [Staphylococcus aureus subsp. aureus 58-424] gi|291466787|gb|EFF09307.1| transcription antitermination factor NusB [Staphylococcus aureus subsp. aureus M809] gi|294968394|gb|EFG44418.1| transcription antitermination factor NusB [Staphylococcus aureus A8819] gi|296887773|gb|EFH26671.1| transcription antitermination factor NusB [Staphylococcus aureus subsp. aureus ATCC 51811] gi|297177421|gb|EFH36673.1| transcription antitermination factor NusB [Staphylococcus aureus A8796] gi|298694807|gb|ADI98029.1| N utilization substance protein B [Staphylococcus aureus subsp. aureus ED133] gi|300886083|gb|EFK81285.1| transcription antitermination factor NusB [Staphylococcus aureus subsp. aureus TCH70] gi|302333201|gb|ADL23394.1| putative N utilization substance protein B [Staphylococcus aureus subsp. aureus JKD6159] gi|302751356|gb|ADL65533.1| putative N utilization substance protein B [Staphylococcus aureus subsp. aureus str. JKD6008] gi|304340614|gb|EFM06548.1| transcription antitermination factor NusB [Staphylococcus aureus subsp. aureus ATCC BAA-39] gi|312829914|emb|CBX34756.1| transcription antitermination factor NusB [Staphylococcus aureus subsp. aureus ECT-R 2] gi|315129802|gb|EFT85792.1| transcription antitermination protein NusB [Staphylococcus aureus subsp. aureus CGS03] gi|320140590|gb|EFW32444.1| transcription antitermination factor NusB [Staphylococcus aureus subsp. aureus MRSA131] gi|323440422|gb|EGA98134.1| transcription antitermination protein NusB [Staphylococcus aureus O11] gi|323443196|gb|EGB00814.1| transcription antitermination protein NusB [Staphylococcus aureus O46] gi|329314202|gb|AEB88615.1| N utilization substance protein B -like protein [Staphylococcus aureus subsp. aureus T0131] gi|329727098|gb|EGG63554.1| transcription antitermination factor NusB [Staphylococcus aureus subsp. aureus 21172] gi|329728323|gb|EGG64760.1| transcription antitermination factor NusB [Staphylococcus aureus subsp. aureus 21189] gi|329730817|gb|EGG67195.1| transcription antitermination factor NusB [Staphylococcus aureus subsp. aureus 21193] Length = 129 Score = 144 bits (364), Expect = 4e-33, Method: Composition-based stats. Identities = 38/140 (27%), Positives = 64/140 (45%), Gaps = 13/140 (9%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 R +R+ A Q L+Q+++ ++ E F D D+ D E+ ++ G Sbjct: 3 RKESRVQAFQTLFQLEMKDSD----LTINEAISFIKDDNPDL-------DFEFIHWLVSG 51 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135 V D + +D IS L + W+ +RL ILR E++ P +V+++E V + Sbjct: 52 VKDHEPVLDETISPYL-KDWTIARLLKTDRIILRMATYEILHS-DTPAKVVMNEAVELTK 109 Query: 136 DFFYGDEPKFINAVLDKVSR 155 F D KFIN VL + + Sbjct: 110 QFSDDDHYKFINGVLSNIKK 129 >gi|302392489|ref|YP_003828309.1| NusB antitermination factor [Acetohalobium arabaticum DSM 5501] gi|302204566|gb|ADL13244.1| NusB antitermination factor [Acetohalobium arabaticum DSM 5501] Length = 138 Score = 144 bits (364), Expect = 4e-33, Method: Composition-based stats. Identities = 44/149 (29%), Positives = 64/149 (42%), Gaps = 12/149 (8%) Query: 10 LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF 69 + + R AR AVQ LYQIDI + + + E + Sbjct: 1 MTDRYSRHEARKIAVQTLYQIDINDEGLEKNLEMLTNRIEGLELED-----------TFL 49 Query: 70 RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISE 129 II G ID ++ E W SR+ + +ILR + E++ +P+EV I E Sbjct: 50 EEIITGTYQNLSEIDKELNES-AEGWKVSRMGKVDRNILRLAIYEILYVDDIPIEVSIDE 108 Query: 130 YVCIAHDFFYGDEPKFINAVLDKVSRKEE 158 V +A +F PKFIN VL +V K+E Sbjct: 109 AVELAKEFIADKSPKFINGVLGRVVSKQE 137 >gi|224824226|ref|ZP_03697334.1| NusB antitermination factor [Lutiella nitroferrum 2002] gi|224603645|gb|EEG09820.1| NusB antitermination factor [Lutiella nitroferrum 2002] Length = 148 Score = 144 bits (364), Expect = 4e-33, Method: Composition-based stats. Identities = 37/145 (25%), Positives = 60/145 (41%), Gaps = 14/145 (9%) Query: 10 LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF 69 +K S RR AR AVQ +Y+ ++ +I + L ++ D F Sbjct: 1 MKTSRRR--AREFAVQGIYEWELNPDRPASLI----------EKHLRENDYFVKADEALF 48 Query: 70 RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISE 129 R ++ GV+ + I + + ++L LEL + P VII+E Sbjct: 49 RTLLFGVLKDAAELSPKIDRYYER--PADEVSPVERAVLLMAALELTQHPETPYPVIINE 106 Query: 130 YVCIAHDFFYGDEPKFINAVLDKVS 154 + I F D KF+N VLDK++ Sbjct: 107 AIEITKTFGGTDGHKFVNGVLDKLA 131 >gi|73748962|ref|YP_308201.1| N utilization substance protein B [Dehalococcoides sp. CBDB1] gi|147669729|ref|YP_001214547.1| NusB antitermination factor [Dehalococcoides sp. BAV1] gi|289432959|ref|YP_003462832.1| NusB antitermination factor [Dehalococcoides sp. GT] gi|119390765|sp|Q3ZYI9|NUSB_DEHSC RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|189035888|sp|A5FQ51|NUSB_DEHSB RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|73660678|emb|CAI83285.1| N utilization substance protein B [Dehalococcoides sp. CBDB1] gi|146270677|gb|ABQ17669.1| NusB antitermination factor [Dehalococcoides sp. BAV1] gi|288946679|gb|ADC74376.1| NusB antitermination factor [Dehalococcoides sp. GT] Length = 143 Score = 144 bits (364), Expect = 4e-33, Method: Composition-based stats. Identities = 39/144 (27%), Positives = 68/144 (47%), Gaps = 12/144 (8%) Query: 12 LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71 ++ R AR +QALY+ D+ G + +++ T E+ ++E+ Sbjct: 1 MTTSRRKAREIVLQALYEQDLAGHNAEDVLKRLLT-----------ENPQTEENVEFIFR 49 Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131 + + V+ K +D I + W +L I ++LR + E+I + VPV+V I+E V Sbjct: 50 LTNAVVKHKDLLDENIRQFASA-WPVEQLSYIDRNVLRLAIFEIIHENDVPVKVAINEAV 108 Query: 132 CIAHDFFYGDEPKFINAVLDKVSR 155 +A F +FIN VL VS+ Sbjct: 109 ELAKSFGGNSSARFINGVLSSVSK 132 >gi|134298933|ref|YP_001112429.1| NusB antitermination factor [Desulfotomaculum reducens MI-1] gi|172044268|sp|A4J3F1|NUSB_DESRM RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|134051633|gb|ABO49604.1| NusB antitermination factor [Desulfotomaculum reducens MI-1] Length = 143 Score = 144 bits (364), Expect = 4e-33, Method: Composition-based stats. Identities = 31/143 (21%), Positives = 66/143 (46%), Gaps = 12/143 (8%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 R AR A+Q L+QID+ + E ++E+ R ++ G Sbjct: 3 RRQARETALQVLFQIDLGKTEPDLAL-----------NNTAEEFGAGPQEIEFARQLVMG 51 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135 ++ + ID +I ++++W +R+ + +I+R + E+ +P V ++E + ++ Sbjct: 52 TLEHIEEIDAMIGK-VSKEWQLNRMANVDRNIMRLAIFEMNYRADIPKSVSVNEALELSK 110 Query: 136 DFFYGDEPKFINAVLDKVSRKEE 158 F D +FIN +L K+ ++ Sbjct: 111 IFGTPDSVRFINGILGKLLDNKD 133 >gi|217964495|ref|YP_002350173.1| transcription antitermination factor NusB [Listeria monocytogenes HCC23] gi|254829884|ref|ZP_05234539.1| transcription antitermination protein NusB [Listeria monocytogenes 10403S] gi|254772645|sp|B8DFW9|NUSB_LISMH RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|217333765|gb|ACK39559.1| transcription antitermination factor NusB [Listeria monocytogenes HCC23] gi|307570941|emb|CAR84120.1| transcription antitermination factor [Listeria monocytogenes L99] Length = 128 Score = 144 bits (364), Expect = 4e-33, Method: Composition-based stats. Identities = 39/144 (27%), Positives = 65/144 (45%), Gaps = 17/144 (11%) Query: 15 RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74 +R AR A+QAL+QI++ S + I +++ ++ ++ Sbjct: 2 KRREAREKALQALFQIELNEMSLDQAI----------------KNIMEDEQDDYMEKLVE 45 Query: 75 GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134 GVM K ID +I L W RL + S+LR V E+ VP V ++E + IA Sbjct: 46 GVMANKAEIDAIIEPNLD-NWRIDRLSKVDLSLLRLSVYEIKYLDDVPNRVSLNESIEIA 104 Query: 135 HDFFYGDEPKFINAVLDKVSRKEE 158 + KFIN VL ++ +++ Sbjct: 105 KIYSDEKSSKFINGVLANIAPEDK 128 >gi|172056940|ref|YP_001813400.1| NusB antitermination factor [Exiguobacterium sibiricum 255-15] gi|171989461|gb|ACB60383.1| NusB antitermination factor [Exiguobacterium sibiricum 255-15] Length = 141 Score = 144 bits (364), Expect = 4e-33, Method: Composition-based stats. Identities = 44/144 (30%), Positives = 69/144 (47%), Gaps = 16/144 (11%) Query: 15 RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74 +R +AR AVQ+L+Q+++ S E I E+ DT + ++ Sbjct: 3 KRHMARELAVQSLFQMELSDLSAQEAI-EFAVEGKEYDT--------------FVTRLVE 47 Query: 75 GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134 GV K ID + + L WSF R+ I +ILR V EL+ +PV V I+E + + Sbjct: 48 GVEANKPEIDQKLRAALV-NWSFERIGNIERTILRLAVYELLFEAKIPVRVTINEAIELT 106 Query: 135 HDFFYGDEPKFINAVLDKVSRKEE 158 F + K +N VL KV+++ E Sbjct: 107 KAFADEEATKIVNGVLGKVAQEVE 130 >gi|225869187|ref|YP_002745135.1| N utilization substance protein B homolog (NusB protein) [Streptococcus equi subsp. zooepidemicus] gi|259514901|sp|C0MED0|NUSB_STRS7 RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|225702463|emb|CAX00364.1| N utilization substance protein B homolog (NusB protein) [Streptococcus equi subsp. zooepidemicus] Length = 150 Score = 144 bits (364), Expect = 4e-33, Method: Composition-based stats. Identities = 39/145 (26%), Positives = 65/145 (44%), Gaps = 8/145 (5%) Query: 14 HRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLE-WFRVI 72 H R R A QAL+ +++ G +F D + +V +L + + Sbjct: 7 HSRRDLRERAFQALFTMEMGGDFL-------LASQFAYDYDKEVADDKQPSELPVFLLNL 59 Query: 73 IHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVC 132 ++GVMD K +D +I L WS RL ++ ++LR G+ E+ P V ++E + Sbjct: 60 VNGVMDHKAELDEVIKKNLKAGWSIERLTVVDKTMLRLGLFEMTLFEETPDRVALNEIIE 119 Query: 133 IAHDFFYGDEPKFINAVLDKVSRKE 157 IA + KFIN +L + E Sbjct: 120 IAKKYSDDTSAKFINGLLSQFVSDE 144 >gi|171779279|ref|ZP_02920250.1| hypothetical protein STRINF_01127 [Streptococcus infantarius subsp. infantarius ATCC BAA-102] gi|171282335|gb|EDT47762.1| hypothetical protein STRINF_01127 [Streptococcus infantarius subsp. infantarius ATCC BAA-102] Length = 142 Score = 144 bits (364), Expect = 4e-33, Method: Composition-based stats. Identities = 33/146 (22%), Positives = 58/146 (39%), Gaps = 7/146 (4%) Query: 11 KLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFR 70 ++ R R A QAL+ ++ G F + VE + Sbjct: 4 NFTNSRRDLRERAFQALFSLEFGGEYLQAAE-------FAYTYDKTVEEDEEVQVPVFLL 56 Query: 71 VIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEY 130 ++ GV D + +D I + L WS RL + ++LR G+ E+ P V ++E Sbjct: 57 NLVKGVCDLQSELDQQIEAHLKSGWSLERLTLTDKALLRLGLYEVKYFEETPGRVAVNEI 116 Query: 131 VCIAHDFFYGDEPKFINAVLDKVSRK 156 + IA + KF+N +L + + Sbjct: 117 IEIAKKYSDETSAKFVNGLLSQFVTE 142 >gi|83590364|ref|YP_430373.1| NusB antitermination factor [Moorella thermoacetica ATCC 39073] gi|119390785|sp|Q2RIA9|NUSB_MOOTA RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|83573278|gb|ABC19830.1| NusB antitermination factor [Moorella thermoacetica ATCC 39073] Length = 145 Score = 144 bits (363), Expect = 5e-33, Method: Composition-based stats. Identities = 38/142 (26%), Positives = 65/142 (45%), Gaps = 13/142 (9%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 R AR A+QAL+ ID+ G S + + E + + R ++ G Sbjct: 3 RRAARAKALQALFAIDVGGTSPDMALEQVLE-----------EGELPPRAMTFTRELVEG 51 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135 M ++ ID +I W RL + +ILR + E+ PV V+I+E + +A Sbjct: 52 TMAKRDAIDAIIRKYAV-GWRLERLAAVDRNILRMALYEMQYHRETPVRVVINEAIELAK 110 Query: 136 DFFYGDEPKFINAVLDKVSRKE 157 +F + +F+N +LD +RK+ Sbjct: 111 NFNNEEAGRFVNGLLDN-ARKD 131 >gi|16800464|ref|NP_470732.1| transcription antitermination protein NusB [Listeria innocua Clip11262] gi|22095959|sp|Q92BZ5|NUSB_LISIN RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|16413869|emb|CAC96627.1| lin1396 [Listeria innocua Clip11262] gi|313619077|gb|EFR90883.1| transcription antitermination factor NusB [Listeria innocua FSL S4-378] gi|313623883|gb|EFR93998.1| transcription antitermination factor NusB [Listeria innocua FSL J1-023] Length = 128 Score = 144 bits (363), Expect = 5e-33, Method: Composition-based stats. Identities = 39/144 (27%), Positives = 66/144 (45%), Gaps = 17/144 (11%) Query: 15 RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74 +R AR A+QAL+QI++ S + I +++ ++ ++ Sbjct: 2 KRREAREKALQALFQIELNEMSLDQAI----------------KNIMEDEQDDYMEQLVE 45 Query: 75 GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134 GVM K ID +I L W RL+ + S+LR V E+ VP V ++E + IA Sbjct: 46 GVMANKAEIDAIIEPNLD-NWRIDRLNKVDLSLLRLSVYEIKYLDDVPNRVSLNESIEIA 104 Query: 135 HDFFYGDEPKFINAVLDKVSRKEE 158 + KFIN VL ++ +++ Sbjct: 105 KIYSDEKSSKFINGVLANIAPEDK 128 >gi|296394716|ref|YP_003659600.1| NusB antitermination factor [Segniliparus rotundus DSM 44985] gi|296181863|gb|ADG98769.1| NusB antitermination factor [Segniliparus rotundus DSM 44985] Length = 157 Score = 144 bits (363), Expect = 5e-33, Method: Composition-based stats. Identities = 40/152 (26%), Positives = 64/152 (42%), Gaps = 8/152 (5%) Query: 11 KLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFR 70 K + R AR AV+ L++ + E+ +E V+ + + Sbjct: 10 KRAGSRRKARRRAVELLFEAEARDLDPAELAAERSAEL--------VKDLSAPQLTPYAL 61 Query: 71 VIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEY 130 +++ GV D +D I L W+ RL + SILR V EL+ VP V + E Sbjct: 62 LLLEGVRDNLDVVDQTIIDHLRGGWTLQRLPAVDRSILRIAVWELLFATEVPTAVAVDEA 121 Query: 131 VCIAHDFFYGDEPKFINAVLDKVSRKEEIKRS 162 + +A + D P FIN VL ++ + RS Sbjct: 122 LELAKELSTDDSPSFINGVLGQLVALADQARS 153 >gi|194335654|ref|YP_002017448.1| NusB antitermination factor [Pelodictyon phaeoclathratiforme BU-1] gi|238693383|sp|B4SCZ7|NUSB_PELPB RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|194308131|gb|ACF42831.1| NusB antitermination factor [Pelodictyon phaeoclathratiforme BU-1] Length = 171 Score = 144 bits (363), Expect = 5e-33, Method: Composition-based stats. Identities = 39/153 (25%), Positives = 66/153 (43%), Gaps = 14/153 (9%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 R R +QALY I+I T AD +++F +++ Sbjct: 5 RRQIREKILQALYTIEIRDTDIDSAAGWLLTEEILADPNA----------MKFFNMLLKN 54 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135 + + + ID I T W SR+ +I +I+R + E++ C +P +V I+E + IA Sbjct: 55 IKEHMEEIDRYIVKH-TFNWDMSRIAIIDKNIIRMALTEILYCEDIPPKVSINEAIEIAK 113 Query: 136 DF-FYGDEPKFINAVLDKVSRKEEIKRSGCVSA 167 F KF+N +LD + ++K G V Sbjct: 114 KFNSTDKSSKFVNGILDAIF--NDLKNEGKVHK 144 >gi|297584560|ref|YP_003700340.1| NusB antitermination factor [Bacillus selenitireducens MLS10] gi|297143017|gb|ADH99774.1| NusB antitermination factor [Bacillus selenitireducens MLS10] Length = 134 Score = 144 bits (363), Expect = 5e-33, Method: Composition-based stats. Identities = 39/147 (26%), Positives = 68/147 (46%), Gaps = 16/147 (10%) Query: 15 RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74 +R +AR+ A+QALYQ+++ G + E I D + ++ Sbjct: 2 KRRVARIKAIQALYQVEMTGVNPEEAIKTVLEENESMD--------------PYLLTLVE 47 Query: 75 GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134 V++ +D+ I + W SRL + +I+R + E+I VPV V I+E + +A Sbjct: 48 RVLEEMDELDIKIQDSMD-NWQLSRLARVDRAIMRIAMYEMIHSDDVPVSVAINEAIDLA 106 Query: 135 HDF-FYGDEPKFINAVLDKVSRKEEIK 160 F + KF+N VL ++K E+ Sbjct: 107 RGFSGDEESGKFVNGVLSNAAKKLEVN 133 >gi|20807741|ref|NP_622912.1| transcription antitermination protein NusB [Thermoanaerobacter tengcongensis MB4] gi|22095940|sp|Q8RAD1|NUSB_THETN RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|20516294|gb|AAM24516.1| Transcription termination factor [Thermoanaerobacter tengcongensis MB4] Length = 140 Score = 144 bits (363), Expect = 5e-33, Method: Composition-based stats. Identities = 36/148 (24%), Positives = 62/148 (41%), Gaps = 14/148 (9%) Query: 15 RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74 R AR V+ LYQ D+ +I + E E+ + Sbjct: 2 NRTEAREWVVKMLYQYDVSKLPLEKIFENF------------YEEHDPGEQKEYIEGTVR 49 Query: 75 GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134 G ++ + ID I ++ W R+ I +ILR + E++ ++PV + I+E V IA Sbjct: 50 GTVEHLEEIDREIEKY-SKDWPLYRMPRIDLAILRCSMYEMLYG-NIPVSISINEAVEIA 107 Query: 135 HDFFYGDEPKFINAVLDKVSRKEEIKRS 162 + D P FIN +L R++ ++ Sbjct: 108 KKYSTDDSPSFINGLLGAFVREKGLEEG 135 >gi|296269370|ref|YP_003652002.1| NusB antitermination factor [Thermobispora bispora DSM 43833] gi|296092157|gb|ADG88109.1| NusB antitermination factor [Thermobispora bispora DSM 43833] Length = 144 Score = 144 bits (363), Expect = 6e-33, Method: Composition-based stats. Identities = 43/155 (27%), Positives = 74/155 (47%), Gaps = 17/155 (10%) Query: 11 KLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFR 70 K R AR A+ L++ + S +++ E E D LE+ Sbjct: 7 KGRQERTQARQRALDILFEAEARAVSPLQVLDERA-------KEADPPV------LEYTV 53 Query: 71 VIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEY 130 ++ GV+ + ID LIS+ + W+ R+ + +ILRAG E++ VP V+ISE+ Sbjct: 54 TLVEGVVRHQDRIDELISTY-AQGWTLDRMPAVDRNILRAGTYEMLWSTDVPENVVISEW 112 Query: 131 VCIAHDFFYGDEPKFINAVLDKVSRKEEIKRSGCV 165 V +A + + P F+N +L +R +E+K S + Sbjct: 113 VRLAAELSTDESPHFVNGLL---ARFKELKPSLTI 144 >gi|16803399|ref|NP_464884.1| transcription antitermination protein NusB [Listeria monocytogenes EGD-e] gi|46907585|ref|YP_013974.1| transcription antitermination protein NusB [Listeria monocytogenes serotype 4b str. F2365] gi|47093746|ref|ZP_00231496.1| N utilization substance protein B [Listeria monocytogenes str. 4b H7858] gi|47095942|ref|ZP_00233545.1| N utilization substance protein B [Listeria monocytogenes str. 1/2a F6854] gi|224499938|ref|ZP_03668287.1| transcription antitermination protein NusB [Listeria monocytogenes Finland 1988] gi|224501698|ref|ZP_03670005.1| transcription antitermination protein NusB [Listeria monocytogenes FSL R2-561] gi|226223960|ref|YP_002758067.1| transcription termination protein (NusB) [Listeria monocytogenes Clip81459] gi|254824582|ref|ZP_05229583.1| transcription antitermination protein NusB [Listeria monocytogenes FSL J1-194] gi|254827620|ref|ZP_05232307.1| transcription antitermination protein NusB [Listeria monocytogenes FSL N3-165] gi|254852593|ref|ZP_05241941.1| transcription antitermination protein NusB [Listeria monocytogenes FSL R2-503] gi|254898476|ref|ZP_05258400.1| transcription antitermination protein NusB [Listeria monocytogenes J0161] gi|254912033|ref|ZP_05262045.1| transcription antitermination protein NusB [Listeria monocytogenes J2818] gi|254932326|ref|ZP_05265685.1| N utilization substance protein B [Listeria monocytogenes HPB2262] gi|254936360|ref|ZP_05268057.1| transcription antitermination protein NusB [Listeria monocytogenes F6900] gi|254994167|ref|ZP_05276357.1| transcription antitermination protein NusB [Listeria monocytogenes FSL J2-064] gi|255018100|ref|ZP_05290226.1| transcription antitermination protein NusB [Listeria monocytogenes FSL F2-515] gi|255029814|ref|ZP_05301765.1| transcription antitermination protein NusB [Listeria monocytogenes LO28] gi|255520789|ref|ZP_05388026.1| transcription antitermination protein NusB [Listeria monocytogenes FSL J1-175] gi|284801744|ref|YP_003413609.1| transcription antitermination protein NusB [Listeria monocytogenes 08-5578] gi|284994886|ref|YP_003416654.1| transcription antitermination protein NusB [Listeria monocytogenes 08-5923] gi|300765401|ref|ZP_07075383.1| hypothetical protein LMHG_12558 [Listeria monocytogenes FSL N1-017] gi|22095949|sp|Q8Y7C6|NUSB_LISMO RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|67460884|sp|Q71ZW3|NUSB_LISMF RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|259514854|sp|C1L2R5|NUSB_LISMC RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|16410775|emb|CAC99437.1| lmo1359 [Listeria monocytogenes EGD-e] gi|46880853|gb|AAT04151.1| N utilization substance protein B [Listeria monocytogenes serotype 4b str. F2365] gi|47015688|gb|EAL06618.1| N utilization substance protein B [Listeria monocytogenes str. 1/2a F6854] gi|47017867|gb|EAL08650.1| N utilization substance protein B [Listeria monocytogenes str. 4b H7858] gi|225876422|emb|CAS05131.1| Putative transcription termination protein (NusB) [Listeria monocytogenes serotype 4b str. CLIP 80459] gi|258599998|gb|EEW13323.1| transcription antitermination protein NusB [Listeria monocytogenes FSL N3-165] gi|258605906|gb|EEW18514.1| transcription antitermination protein NusB [Listeria monocytogenes FSL R2-503] gi|258608951|gb|EEW21559.1| transcription antitermination protein NusB [Listeria monocytogenes F6900] gi|284057306|gb|ADB68247.1| transcription antitermination protein NusB [Listeria monocytogenes 08-5578] gi|284060353|gb|ADB71292.1| transcription antitermination protein NusB [Listeria monocytogenes 08-5923] gi|293583882|gb|EFF95914.1| N utilization substance protein B [Listeria monocytogenes HPB2262] gi|293589999|gb|EFF98333.1| transcription antitermination protein NusB [Listeria monocytogenes J2818] gi|293593820|gb|EFG01581.1| transcription antitermination protein NusB [Listeria monocytogenes FSL J1-194] gi|300513838|gb|EFK40903.1| hypothetical protein LMHG_12558 [Listeria monocytogenes FSL N1-017] gi|328467497|gb|EGF38566.1| transcription antitermination protein NusB [Listeria monocytogenes 1816] gi|328475073|gb|EGF45861.1| transcription antitermination protein NusB [Listeria monocytogenes 220] gi|332311800|gb|EGJ24895.1| N pathway substance protein [Listeria monocytogenes str. Scott A] Length = 128 Score = 144 bits (363), Expect = 6e-33, Method: Composition-based stats. Identities = 39/144 (27%), Positives = 65/144 (45%), Gaps = 17/144 (11%) Query: 15 RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74 +R AR A+QAL+QI++ S + I +++ ++ ++ Sbjct: 2 KRREAREKALQALFQIELNEMSLDQAI----------------KNIMEDEQDDYMEKLVE 45 Query: 75 GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134 GVM K ID +I L W RL + S+LR V E+ VP V ++E + IA Sbjct: 46 GVMANKAEIDAIIEPNLD-NWRMDRLSKVDLSLLRLSVYEIKYLDDVPNRVSLNESIEIA 104 Query: 135 HDFFYGDEPKFINAVLDKVSRKEE 158 + KFIN VL ++ +++ Sbjct: 105 KIYSDEKSSKFINGVLANIAPEDK 128 >gi|149928254|ref|ZP_01916498.1| transcription antitermination protein NusB [Limnobacter sp. MED105] gi|149823060|gb|EDM82301.1| transcription antitermination protein NusB [Limnobacter sp. MED105] Length = 162 Score = 144 bits (363), Expect = 6e-33, Method: Composition-based stats. Identities = 39/174 (22%), Positives = 65/174 (37%), Gaps = 20/174 (11%) Query: 1 MTIQDNKKDLK----LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELD 56 M+ K + R +R A+Q LYQ + E+ D + Sbjct: 1 MSEASKPDSGKRQGHTRNARRRSRELALQGLYQWFLNPTEVGEV-----------DAHIR 49 Query: 57 VESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELI 116 + D E + ++HG + + + I + W L + ++L E+ Sbjct: 50 DAPGFDKADREHYESLLHGSVHHLEDLMHQIQPFIDRPW--GELSPVEKAVLVLASHEMN 107 Query: 117 ECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKV---SRKEEIKRSGCVSA 167 +P V+I+E V + F D KF+N VLDKV +R EIK + Sbjct: 108 THAEIPYRVVINEAVELTKTFGGTDAFKFVNGVLDKVAAQARDSEIKAQANSQS 161 >gi|284991570|ref|YP_003410124.1| NusB antitermination factor [Geodermatophilus obscurus DSM 43160] gi|284064815|gb|ADB75753.1| NusB antitermination factor [Geodermatophilus obscurus DSM 43160] Length = 135 Score = 144 bits (363), Expect = 6e-33, Method: Composition-based stats. Identities = 39/138 (28%), Positives = 55/138 (39%), Gaps = 14/138 (10%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 R AR AV LY+ D+ G E++ E + ++ G Sbjct: 4 RSKARKRAVDVLYEADLRGSDPLELLRERVALA-------------SPPIPDHAVRLVEG 50 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135 V + +D LI WS RL + +ILR V EL+ VP V+I E V +A Sbjct: 51 VAEHAARVDELIDRH-ARGWSIHRLPDVDRAILRMAVFELLWVDDVPDAVVIDEAVELAR 109 Query: 136 DFFYGDEPKFINAVLDKV 153 D P ++N VL V Sbjct: 110 SLSTDDSPAYVNGVLGGV 127 >gi|332799350|ref|YP_004460849.1| NusB antitermination factor [Tepidanaerobacter sp. Re1] gi|332697085|gb|AEE91542.1| NusB antitermination factor [Tepidanaerobacter sp. Re1] Length = 135 Score = 144 bits (363), Expect = 6e-33, Method: Composition-based stats. Identities = 39/146 (26%), Positives = 66/146 (45%), Gaps = 13/146 (8%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 R IAR A + L+ ID+ + E +E+ +E + + + G Sbjct: 3 RKIAREQAFKILFAIDVGNNTVEEA------------SEIVIEFLKDENQKSFILNEVRG 50 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135 V+ +ID++I+ ++ WS R+ +ILR V ELI +P+ V I+E V IA Sbjct: 51 VLKNLSNIDIIINKY-SDDWSIDRMAATDRNILRLAVYELIYSQDIPISVSINEAVEIAK 109 Query: 136 DFFYGDEPKFINAVLDKVSRKEEIKR 161 + KFIN +L ++ K+ Sbjct: 110 KYGDEHSYKFINGLLGSIAEDHASKQ 135 >gi|253999962|ref|YP_003052025.1| NusB antitermination factor [Methylovorus sp. SIP3-4] gi|253986641|gb|ACT51498.1| NusB antitermination factor [Methylovorus sp. SIP3-4] Length = 158 Score = 143 bits (362), Expect = 6e-33, Method: Composition-based stats. Identities = 45/170 (26%), Positives = 73/170 (42%), Gaps = 20/170 (11%) Query: 1 MTIQDNK----KDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELD 56 M+ D K K +K S R +R A++ +Y+ + I+ E Sbjct: 1 MSDTDQKPGDAKPVKASRNRRKSRELALKGIYRNLMNQADFRAILRELAD---------- 50 Query: 57 VESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELI 116 E + D E+ R ++ GV+ ++ +D I+ + L I IL ELI Sbjct: 51 -EPEFDKADQEYLRKLLDGVLAEREELDRRIAVFVDR--PMQELSPIEHGILCLSAYELI 107 Query: 117 ECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRSGCVS 166 S+P V I+E V +A + D K++N VLDK++ + R G VS Sbjct: 108 FDLSIPYRVAINEGVELAKIYGGTDGHKYVNGVLDKLAAEA---RPGEVS 154 >gi|87161392|ref|YP_494169.1| transcription antitermination protein NusB [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|161509753|ref|YP_001575412.1| transcription antitermination protein NusB [Staphylococcus aureus subsp. aureus USA300_TCH1516] gi|294848555|ref|ZP_06789301.1| transcription antitermination factor NusB [Staphylococcus aureus A9754] gi|119390827|sp|Q2FGK9|NUSB_STAA3 RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|189035911|sp|A8Z464|NUSB_STAAT RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|87127366|gb|ABD21880.1| transcription antitermination factor NusB [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|160368562|gb|ABX29533.1| N utilization substance B [Staphylococcus aureus subsp. aureus USA300_TCH1516] gi|294824581|gb|EFG41004.1| transcription antitermination factor NusB [Staphylococcus aureus A9754] gi|315198781|gb|EFU29109.1| transcription antitermination protein NusB [Staphylococcus aureus subsp. aureus CGS01] gi|320144127|gb|EFW35896.1| transcription antitermination factor NusB [Staphylococcus aureus subsp. aureus MRSA177] Length = 129 Score = 143 bits (362), Expect = 6e-33, Method: Composition-based stats. Identities = 37/140 (26%), Positives = 63/140 (45%), Gaps = 13/140 (9%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 R +R+ A Q L+Q+++ ++ E F D D+ D E+ ++ G Sbjct: 3 RKESRVQAFQTLFQLEMKDSD----LTINEAISFIKDDNPDL-------DFEFIHWLVSG 51 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135 V + +D IS L + W+ +RL ILR E++ P +V+++E V + Sbjct: 52 VKGHEPVLDETISPYL-KDWTIARLLKTDRIILRMATYEILHS-DTPAKVVMNEAVELTK 109 Query: 136 DFFYGDEPKFINAVLDKVSR 155 F D KFIN VL + + Sbjct: 110 QFSDDDHYKFINGVLSNIKK 129 >gi|302550131|ref|ZP_07302473.1| transcription antitermination factor NusB [Streptomyces viridochromogenes DSM 40736] gi|302467749|gb|EFL30842.1| transcription antitermination factor NusB [Streptomyces viridochromogenes DSM 40736] Length = 144 Score = 143 bits (362), Expect = 7e-33, Method: Composition-based stats. Identities = 34/138 (24%), Positives = 63/138 (45%), Gaps = 9/138 (6%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 R AR A Q L++ D G +++++ + V E+ ++ G Sbjct: 4 RNTARKRAFQILFEGDQRGAEALTVLADWVRLSRADTRQPPVS--------EYTMELVEG 55 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135 + ID LI+ + W+ R+ ++ +ILR G ELI + P V++ E V +A Sbjct: 56 YAKHAKRIDELIAQY-SVGWTLDRMPVVDRNILRLGAYELIWVDATPDAVVLDEMVQLAK 114 Query: 136 DFFYGDEPKFINAVLDKV 153 +F + P F+N +L ++ Sbjct: 115 EFSTDESPSFVNGLLGRL 132 >gi|312866399|ref|ZP_07726617.1| transcription antitermination factor NusB [Streptococcus downei F0415] gi|311098093|gb|EFQ56319.1| transcription antitermination factor NusB [Streptococcus downei F0415] Length = 139 Score = 143 bits (362), Expect = 7e-33, Method: Composition-based stats. Identities = 34/143 (23%), Positives = 58/143 (40%), Gaps = 6/143 (4%) Query: 12 LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71 ++ R R A QA++ ++ + F + + + Sbjct: 1 MTESRHNLRERAFQAIFSLEFGQADFLQAA------NFAYSYDKQGQEGEELEVPAFLLN 54 Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131 ++ G +D ID LIS L EKWS RL + S+LR G+ E+ P +V ++E + Sbjct: 55 LVKGTVDNLTEIDGLISENLKEKWSLERLTLTDRSLLRLGLYEIKYHEETPAKVALNEVI 114 Query: 132 CIAHDFFYGDEPKFINAVLDKVS 154 + + KFIN +L K Sbjct: 115 ELTKAYSDQTSAKFINGILTKFV 137 >gi|225869862|ref|YP_002745809.1| N utilization substance protein B homolog (NusB protein) [Streptococcus equi subsp. equi 4047] gi|254772656|sp|C0MBK2|NUSB_STRE4 RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|225699266|emb|CAW92587.1| N utilization substance protein B homolog (NusB protein) [Streptococcus equi subsp. equi 4047] Length = 150 Score = 143 bits (362), Expect = 7e-33, Method: Composition-based stats. Identities = 39/144 (27%), Positives = 64/144 (44%), Gaps = 6/144 (4%) Query: 14 HRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVII 73 H R R A QAL+ +++ G Y+ + AD + E + ++ Sbjct: 7 HSRRDLRERAFQALFAMEMGGDFLPASQFAYDYDKEAADDKQPSELPV------FLLNLV 60 Query: 74 HGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCI 133 +GVMD K +D +I L WS RL ++ ++LR G+ E+ P V ++E + I Sbjct: 61 NGVMDHKAELDEVIKKNLKTSWSIERLTVVDKTMLRLGLFEMTLFEETPDRVALNEIIEI 120 Query: 134 AHDFFYGDEPKFINAVLDKVSRKE 157 A + KFIN +L + E Sbjct: 121 AKKYSDDTSAKFINGLLSQFVSDE 144 >gi|51244954|ref|YP_064838.1| transcription termination factor (NusB) [Desulfotalea psychrophila LSv54] gi|81642559|sp|Q6AP93|NUSB_DESPS RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|50875991|emb|CAG35831.1| probable transcription termination factor (NusB) [Desulfotalea psychrophila LSv54] Length = 141 Score = 143 bits (362), Expect = 8e-33, Method: Composition-based stats. Identities = 44/141 (31%), Positives = 61/141 (43%), Gaps = 12/141 (8%) Query: 16 RGIARLAAVQALYQIDI---IGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVI 72 R AR AA+Q LYQ D + E+ +E + + + Sbjct: 4 RRFAREAALQFLYQDDFIPESADTPGELKERFEQFCEIYQVN--------KKGRTYALNL 55 Query: 73 IHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVC 132 I GV+ ++ ID LI W SR+ ++LR E+ C VP EV I+E V Sbjct: 56 IAGVLADQEAIDRLIEEAAV-NWRMSRISATDRNLLRVATFEINFCDDVPAEVAINEAVE 114 Query: 133 IAHDFFYGDEPKFINAVLDKV 153 IA F + PKF+N VLD V Sbjct: 115 IAKRFCGDESPKFVNGVLDAV 135 >gi|239905097|ref|YP_002951836.1| N utilization substance protein B homolog [Desulfovibrio magneticus RS-1] gi|239794961|dbj|BAH73950.1| N utilization substance protein B homolog [Desulfovibrio magneticus RS-1] Length = 159 Score = 143 bits (362), Expect = 8e-33, Method: Composition-based stats. Identities = 40/163 (24%), Positives = 69/163 (42%), Gaps = 9/163 (5%) Query: 1 MTIQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESV 60 MT D+KK + R AR A + LY G S E R DV Sbjct: 1 MTESDDKKPI---VSRRKARKQAFEFLY-----GLSFEPAADERSLLRLFKRCPHDVAEG 52 Query: 61 YLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHS 120 E+ ++ GV ++ ID I ++ W SR+ + +ILR V E++ Sbjct: 53 EDDAGHEFAWELVLGVWRNQRDIDATIVRF-SKNWKISRIAKVELTILRLAVHEILSRPD 111 Query: 121 VPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRSG 163 +P+ V ++E + ++ + + FIN +LD +++ + G Sbjct: 112 IPLRVSLNEAIELSKRYGDENSRNFINGILDALAKAVDSGEFG 154 >gi|237654565|ref|YP_002890879.1| transcription antitermination protein NusB [Thauera sp. MZ1T] gi|237625812|gb|ACR02502.1| NusB antitermination factor [Thauera sp. MZ1T] Length = 166 Score = 143 bits (362), Expect = 8e-33, Method: Composition-based stats. Identities = 42/155 (27%), Positives = 67/155 (43%), Gaps = 17/155 (10%) Query: 11 KLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFR 70 K++ RR AR A+Q +YQ + G + T + E+ D +D E F Sbjct: 21 KMARRR--ARELALQGVYQWLLSGNNATTVQRHLESETENLD----------KIDRELFV 68 Query: 71 VIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEY 130 ++ G + L+ + L I +IL G EL P V+I+E Sbjct: 69 SLLRGATGAADELRGCFEPLLSR--PVAELSPIEHAILLLGTHELRHNLDTPYRVVINEA 126 Query: 131 VCIAHDFFYGDEPKFINAVLDKVS---RKEEIKRS 162 + +A + D KF+N VLDK+S R EE++ + Sbjct: 127 IELAKGYGGTDGHKFVNGVLDKLSTRLRPEEVEAA 161 >gi|50954771|ref|YP_062059.1| transcription termination factor [Leifsonia xyli subsp. xyli str. CTCB07] gi|71648799|sp|Q6AF91|NUSB_LEIXX RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|50951253|gb|AAT88954.1| transcription termination factor [Leifsonia xyli subsp. xyli str. CTCB07] Length = 144 Score = 143 bits (361), Expect = 8e-33, Method: Composition-based stats. Identities = 41/150 (27%), Positives = 65/150 (43%), Gaps = 11/150 (7%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 R AR A+ L+ D+ S + + E + R I+ G Sbjct: 4 RTKARKRALDLLFSADVRQISL--------AHALAVEAERAANEPAREASWLYAREIVDG 55 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135 V+D ++ ID I + + W+ +R+ + +ILR GV EL+ VP V ISE V A Sbjct: 56 VIDNQEEIDEQIETY-AQGWTLARMPAVDRAILRIGVWELLFNDQVPDGVAISEAVEAAT 114 Query: 136 DFFYGDEPKFINAVLDKVSRKEEIKRSGCV 165 D F+N +L K+++ + R G V Sbjct: 115 VLSTDDSAGFVNGLLAKIAQNK--PRDGEV 142 >gi|298245582|ref|ZP_06969388.1| NusB antitermination factor [Ktedonobacter racemifer DSM 44963] gi|297553063|gb|EFH86928.1| NusB antitermination factor [Ktedonobacter racemifer DSM 44963] Length = 147 Score = 143 bits (361), Expect = 8e-33, Method: Composition-based stats. Identities = 35/147 (23%), Positives = 65/147 (44%), Gaps = 12/147 (8%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 R AR+ A+Q LY+ D++ EI+ + R +E+ + + G Sbjct: 5 RRQARMVALQTLYEYDMVHHDPLEILQRHAEER-----------NLHAKVVEYAQELAEG 53 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135 V ID I S +W ++ + +ILR + E++ ++VP + I+E V +A Sbjct: 54 VCKHLADIDAHIQSA-AREWPLQQMARVDKNILRLAIYEILFNNTVPAKAAINEAVELAK 112 Query: 136 DFFYGDEPKFINAVLDKVSRKEEIKRS 162 F +FIN VL + + + + + Sbjct: 113 LFGSDTSSRFINGVLGTIFNRAQQQPT 139 >gi|242373824|ref|ZP_04819398.1| transcription antitermination protein NusB [Staphylococcus epidermidis M23864:W1] gi|242348378|gb|EES39980.1| transcription antitermination protein NusB [Staphylococcus epidermidis M23864:W1] Length = 128 Score = 143 bits (361), Expect = 8e-33, Method: Composition-based stats. Identities = 39/138 (28%), Positives = 60/138 (43%), Gaps = 13/138 (9%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 R +R+ A Q L+Q+++ T E F D + +D ++ ++ G Sbjct: 3 RKESRIQAFQTLFQLEMKDTDLTIT----EAINFIKD-------DHPELDFDFIHWLVTG 51 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135 V D + +D I L + WS RL ILR E++ P +VII+E V + Sbjct: 52 VKDHESVLDEKIKPHL-KDWSIERLLKSDRIILRMATFEMLHS-DTPEKVIINEAVELTK 109 Query: 136 DFFYGDEPKFINAVLDKV 153 F D KFIN VL + Sbjct: 110 QFSDDDHYKFINGVLSNI 127 >gi|264679471|ref|YP_003279378.1| NusB antitermination factor [Comamonas testosteroni CNB-2] gi|299530553|ref|ZP_07043973.1| NusB antitermination factor [Comamonas testosteroni S44] gi|262209984|gb|ACY34082.1| NusB antitermination factor [Comamonas testosteroni CNB-2] gi|298721529|gb|EFI62466.1| NusB antitermination factor [Comamonas testosteroni S44] Length = 178 Score = 143 bits (361), Expect = 9e-33, Method: Composition-based stats. Identities = 38/159 (23%), Positives = 72/159 (45%), Gaps = 14/159 (8%) Query: 1 MTIQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESV 60 +T +K S+ R AR A+Q LYQ + + +I RF D + Sbjct: 21 LTSTGARKAGSKSN-RSRAREFALQGLYQHIVGRNAVLDI------DRFTRDL-----AG 68 Query: 61 YLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHS 120 + D+ + ++ G ++ + +D LI+ L + + I + + GV E C Sbjct: 69 FHKADVVHYDALLRGCVENEAALDALITPKLDRG--LTEISPIEHACMWIGVYEFQNCPD 126 Query: 121 VPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEI 159 VP V+++E + +A +F D K++NAVL+ ++ + Sbjct: 127 VPWRVVLNECIELAKEFGGTDGHKYVNAVLNGLAPELRA 165 >gi|227517900|ref|ZP_03947949.1| transcription antitermination protein NusB [Enterococcus faecalis TX0104] gi|227555087|ref|ZP_03985134.1| transcription antitermination protein NusB [Enterococcus faecalis HH22] gi|229546824|ref|ZP_04435549.1| transcription antitermination protein NusB [Enterococcus faecalis TX1322] gi|229548918|ref|ZP_04437643.1| transcription antitermination protein NusB [Enterococcus faecalis ATCC 29200] gi|293382527|ref|ZP_06628461.1| transcription antitermination factor NusB [Enterococcus faecalis R712] gi|293387873|ref|ZP_06632412.1| transcription antitermination factor NusB [Enterococcus faecalis S613] gi|307268058|ref|ZP_07549446.1| transcription antitermination factor NusB [Enterococcus faecalis TX4248] gi|307271988|ref|ZP_07553255.1| transcription antitermination factor NusB [Enterococcus faecalis TX0855] gi|307275459|ref|ZP_07556601.1| transcription antitermination factor NusB [Enterococcus faecalis TX2134] gi|307278973|ref|ZP_07560032.1| transcription antitermination factor NusB [Enterococcus faecalis TX0860] gi|307289420|ref|ZP_07569374.1| transcription antitermination factor NusB [Enterococcus faecalis TX0109] gi|307290060|ref|ZP_07569984.1| transcription antitermination factor NusB [Enterococcus faecalis TX0411] gi|312900448|ref|ZP_07759755.1| transcription antitermination factor NusB [Enterococcus faecalis TX0470] gi|312904540|ref|ZP_07763698.1| transcription antitermination factor NusB [Enterococcus faecalis TX0635] gi|312906870|ref|ZP_07765867.1| transcription antitermination factor NusB [Enterococcus faecalis DAPTO 512] gi|312952750|ref|ZP_07771612.1| transcription antitermination factor NusB [Enterococcus faecalis TX0102] gi|312978875|ref|ZP_07790601.1| transcription antitermination factor NusB [Enterococcus faecalis DAPTO 516] gi|227074654|gb|EEI12617.1| transcription antitermination protein NusB [Enterococcus faecalis TX0104] gi|227175755|gb|EEI56727.1| transcription antitermination protein NusB [Enterococcus faecalis HH22] gi|229305939|gb|EEN71935.1| transcription antitermination protein NusB [Enterococcus faecalis ATCC 29200] gi|229307989|gb|EEN73976.1| transcription antitermination protein NusB [Enterococcus faecalis TX1322] gi|291080075|gb|EFE17439.1| transcription antitermination factor NusB [Enterococcus faecalis R712] gi|291082720|gb|EFE19683.1| transcription antitermination factor NusB [Enterococcus faecalis S613] gi|306498902|gb|EFM68396.1| transcription antitermination factor NusB [Enterococcus faecalis TX0411] gi|306499675|gb|EFM69038.1| transcription antitermination factor NusB [Enterococcus faecalis TX0109] gi|306504360|gb|EFM73571.1| transcription antitermination factor NusB [Enterococcus faecalis TX0860] gi|306507847|gb|EFM76975.1| transcription antitermination factor NusB [Enterococcus faecalis TX2134] gi|306511335|gb|EFM80338.1| transcription antitermination factor NusB [Enterococcus faecalis TX0855] gi|306515699|gb|EFM84226.1| transcription antitermination factor NusB [Enterococcus faecalis TX4248] gi|310627124|gb|EFQ10407.1| transcription antitermination factor NusB [Enterococcus faecalis DAPTO 512] gi|310629266|gb|EFQ12549.1| transcription antitermination factor NusB [Enterococcus faecalis TX0102] gi|310632053|gb|EFQ15336.1| transcription antitermination factor NusB [Enterococcus faecalis TX0635] gi|311288312|gb|EFQ66868.1| transcription antitermination factor NusB [Enterococcus faecalis DAPTO 516] gi|311292424|gb|EFQ70980.1| transcription antitermination factor NusB [Enterococcus faecalis TX0470] gi|315026954|gb|EFT38886.1| transcription antitermination factor NusB [Enterococcus faecalis TX2137] gi|315029667|gb|EFT41599.1| transcription antitermination factor NusB [Enterococcus faecalis TX4000] gi|315034207|gb|EFT46139.1| transcription antitermination factor NusB [Enterococcus faecalis TX0027] gi|315144361|gb|EFT88377.1| transcription antitermination factor NusB [Enterococcus faecalis TX2141] gi|315147929|gb|EFT91945.1| transcription antitermination factor NusB [Enterococcus faecalis TX4244] gi|315149499|gb|EFT93515.1| transcription antitermination factor NusB [Enterococcus faecalis TX0012] gi|315153054|gb|EFT97070.1| transcription antitermination factor NusB [Enterococcus faecalis TX0031] gi|315156826|gb|EFU00843.1| transcription antitermination factor NusB [Enterococcus faecalis TX0043] gi|315157613|gb|EFU01630.1| transcription antitermination factor NusB [Enterococcus faecalis TX0312] gi|315162959|gb|EFU06976.1| transcription antitermination factor NusB [Enterococcus faecalis TX0645] gi|315165157|gb|EFU09174.1| transcription antitermination factor NusB [Enterococcus faecalis TX1302] gi|315168057|gb|EFU12074.1| transcription antitermination factor NusB [Enterococcus faecalis TX1341] gi|315171915|gb|EFU15932.1| transcription antitermination factor NusB [Enterococcus faecalis TX1342] gi|315173308|gb|EFU17325.1| transcription antitermination factor NusB [Enterococcus faecalis TX1346] gi|315574278|gb|EFU86469.1| transcription antitermination factor NusB [Enterococcus faecalis TX0309B] gi|315577406|gb|EFU89597.1| transcription antitermination factor NusB [Enterococcus faecalis TX0630] gi|315581567|gb|EFU93758.1| transcription antitermination factor NusB [Enterococcus faecalis TX0309A] gi|327534564|gb|AEA93398.1| transcription antitermination factor NusB [Enterococcus faecalis OG1RF] Length = 156 Score = 143 bits (361), Expect = 9e-33, Method: Composition-based stats. Identities = 40/158 (25%), Positives = 70/158 (44%), Gaps = 3/158 (1%) Query: 3 IQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYL 62 ++ K+ K R R A+QAL+ +D T + + Y D V Sbjct: 1 MKMEKRMSKTELTRHEIREKALQALFPLDFNADLTKQ---DAIDYALAYDNREIVSEDGE 57 Query: 63 HVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVP 122 + + +++ GV RK +D +I++ L WS RL I ILR + E++ VP Sbjct: 58 DLVPTYLDLLVGGVCSRKAELDEVITNHLGNNWSMQRLAKIDIVILRLAIFEMLYVSDVP 117 Query: 123 VEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIK 160 V ++E V ++ + KF+N VL V ++ + + Sbjct: 118 NIVALNEAVELSKKYSDDRSRKFVNGVLSNVMKEIDSE 155 >gi|239816087|ref|YP_002944997.1| NusB antitermination factor [Variovorax paradoxus S110] gi|259514920|sp|C5CPZ2|NUSB_VARPS RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|239802664|gb|ACS19731.1| NusB antitermination factor [Variovorax paradoxus S110] Length = 181 Score = 143 bits (361), Expect = 9e-33, Method: Composition-based stats. Identities = 44/170 (25%), Positives = 75/170 (44%), Gaps = 17/170 (10%) Query: 1 MTIQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESV 60 +T +K S+ R AR A+QALYQ + TEI D + Sbjct: 23 LTSTGARKASAKSN-RSRAREFALQALYQHLVGRNDPTEI-----------DHFTRDLAG 70 Query: 61 YLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHS 120 + D + ++HG ++ + +D LI L K F + I +++ GV E C Sbjct: 71 FHKADAAHYDALLHGSIEGAEQLDALIRPLLDRK--FEEISPIEHAVMWIGVYEFQHCLD 128 Query: 121 VPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVS---RKEEIKRSGCVSA 167 VP V+++E + +A +F D K++NAVL+ ++ R E++ Sbjct: 129 VPWRVVLNECIELAKEFGGTDGHKYVNAVLNGLAPQLRAAEVEADRASGK 178 >gi|187927756|ref|YP_001898243.1| transcription antitermination protein NusB [Ralstonia pickettii 12J] gi|238691779|sp|B2U7E9|NUSB_RALPJ RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|187724646|gb|ACD25811.1| NusB antitermination factor [Ralstonia pickettii 12J] Length = 155 Score = 143 bits (361), Expect = 9e-33, Method: Composition-based stats. Identities = 32/144 (22%), Positives = 58/144 (40%), Gaps = 13/144 (9%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 R AR A+Q LYQ + + + L + D F ++HG Sbjct: 18 RRRARELALQGLYQWLLNRNDPGVVEA-----------HLQDAQGFNKADRAHFDALLHG 66 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135 + + + + L + L + + L G EL+ C +P +V+I+E V + Sbjct: 67 AIREETTLTEAFTPYLDR--PVAELSPVERAALLVGAYELVHCVDIPYKVVINEAVELTK 124 Query: 136 DFFYGDEPKFINAVLDKVSRKEEI 159 F + K++N VLDK++ + Sbjct: 125 TFGGVEGYKYVNGVLDKLATQVRA 148 >gi|315282224|ref|ZP_07870678.1| transcription antitermination factor NusB [Listeria marthii FSL S4-120] gi|313614126|gb|EFR87816.1| transcription antitermination factor NusB [Listeria marthii FSL S4-120] Length = 128 Score = 143 bits (361), Expect = 9e-33, Method: Composition-based stats. Identities = 39/144 (27%), Positives = 65/144 (45%), Gaps = 17/144 (11%) Query: 15 RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74 +R AR A+QAL+QI++ S + I +++ ++ ++ Sbjct: 2 KRREAREKALQALFQIELNEMSLDQAI----------------KNIMEDEQDDYMEKLVE 45 Query: 75 GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134 GVM K ID +I L W RL + S+LR V E+ VP V ++E + IA Sbjct: 46 GVMANKAEIDAIIEPNLD-NWRMDRLSKVDLSLLRVSVYEIKYLDDVPNRVSLNESIEIA 104 Query: 135 HDFFYGDEPKFINAVLDKVSRKEE 158 + KFIN VL ++ +++ Sbjct: 105 KIYSDEKSSKFINGVLANIAPEDK 128 >gi|315031736|gb|EFT43668.1| transcription antitermination factor NusB [Enterococcus faecalis TX0017] Length = 156 Score = 143 bits (361), Expect = 1e-32, Method: Composition-based stats. Identities = 40/158 (25%), Positives = 70/158 (44%), Gaps = 3/158 (1%) Query: 3 IQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYL 62 ++ K+ K R R A+QAL+ +D T + + Y D V Sbjct: 1 MKMEKRMSKTELTRHEIREKALQALFPLDFNADLTKQ---DAIDYALAYDNREIVSEDSE 57 Query: 63 HVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVP 122 + + +++ GV RK +D +I++ L WS RL I ILR + E++ VP Sbjct: 58 DLVPTYLDLLVGGVCSRKAELDEVITNHLGNNWSMQRLAKIDIVILRLAIFEMLYVSDVP 117 Query: 123 VEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIK 160 V ++E V ++ + KF+N VL V ++ + + Sbjct: 118 NIVALNEAVELSKKYSDDRSRKFVNGVLSNVMKEIDSE 155 >gi|210633860|ref|ZP_03297875.1| hypothetical protein COLSTE_01792 [Collinsella stercoris DSM 13279] gi|210159029|gb|EEA90000.1| hypothetical protein COLSTE_01792 [Collinsella stercoris DSM 13279] Length = 216 Score = 143 bits (361), Expect = 1e-32, Method: Composition-based stats. Identities = 38/154 (24%), Positives = 69/154 (44%), Gaps = 16/154 (10%) Query: 9 DLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEW 68 LK++ R +AR A+Q L+Q ++ G S ++++ T + + Sbjct: 3 SLKVNRGRTLARSQALQILFQAEVRGESVGDVLAGDFTLSKGPLAD-------------Y 49 Query: 69 FRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIEC--HSVPVEVI 126 I GV ++ ID + ++ WS R+ ++LRA V EL ++ V+ Sbjct: 50 AIQIARGVDANRERIDSAL-RAVSANWSLERMPGADRNLLRAAVYELYFQVADTLDAAVV 108 Query: 127 ISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIK 160 I+E V IA + D F+N VL ++ R+ + Sbjct: 109 INEAVEIAKAYGTDDSAGFVNGVLGRIVRERHLP 142 >gi|229823019|ref|ZP_04449089.1| hypothetical protein GCWU000282_00312 [Catonella morbi ATCC 51271] gi|229787832|gb|EEP23946.1| hypothetical protein GCWU000282_00312 [Catonella morbi ATCC 51271] Length = 154 Score = 142 bits (360), Expect = 1e-32, Method: Composition-based stats. Identities = 41/150 (27%), Positives = 67/150 (44%), Gaps = 8/150 (5%) Query: 11 KLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFR 70 K+S+ R R AVQ ++Q+ +S + F + D E+ + D + Sbjct: 10 KMSN-RHQVREKAVQTIFQL----IRPQVPVSLDQACAFALEAGNDPEAGFEGSD-AYLD 63 Query: 71 VIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIE--CHSVPVEVIIS 128 ++ GV + +D IS L E W+ RL I +ILR EL+ VP +V ++ Sbjct: 64 RLVQGVNQTAEELDQRISHYLAEDWTLDRLARIDLAILRVAFYELLYVSEDEVPSKVAVN 123 Query: 129 EYVCIAHDFFYGDEPKFINAVLDKVSRKEE 158 E V +A F +FIN VL + + + Sbjct: 124 EAVELAKTFSDDKSKQFINGVLAGLLKDLK 153 >gi|71911358|ref|YP_282908.1| transcription antitermination protein NusB [Streptococcus pyogenes MGAS5005] gi|71854140|gb|AAZ52163.1| N utilization substance protein B [Streptococcus pyogenes MGAS5005] Length = 150 Score = 142 bits (360), Expect = 1e-32, Method: Composition-based stats. Identities = 35/139 (25%), Positives = 68/139 (48%), Gaps = 6/139 (4%) Query: 14 HRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVII 73 + R R A QAL+ I++ E+++ + + D ++ L + + + ++ Sbjct: 7 NSRRDLRERAFQALFNIEMG----AELLAA-SQFAYGYDKVTGEDAQVLELPI-FLLSLV 60 Query: 74 HGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCI 133 GV + K+ +D LIS+ L + WS RL + ++LR G+ E+ P V ++E + + Sbjct: 61 TGVNNHKEELDNLISTHLKKGWSLERLTLTDKTLLRLGLFEIKYFDETPDRVALNEIIEV 120 Query: 134 AHDFFYGDEPKFINAVLDK 152 A + KFIN +L + Sbjct: 121 AKKYSDETSAKFINGLLSQ 139 >gi|49483774|ref|YP_040998.1| transcription antitermination protein NusB [Staphylococcus aureus subsp. aureus MRSA252] gi|282904107|ref|ZP_06311995.1| transcription antitermination factor NusB [Staphylococcus aureus subsp. aureus C160] gi|282905934|ref|ZP_06313789.1| transcription antitermination factor NusB [Staphylococcus aureus subsp. aureus Btn1260] gi|282908844|ref|ZP_06316662.1| transcription antitermination factor NusB [Staphylococcus aureus subsp. aureus WW2703/97] gi|283958289|ref|ZP_06375740.1| transcription antitermination factor NusB [Staphylococcus aureus subsp. aureus A017934/97] gi|295428103|ref|ZP_06820735.1| transcription antitermination factor NusB [Staphylococcus aureus subsp. aureus EMRSA16] gi|297590931|ref|ZP_06949569.1| transcription antitermination factor NusB [Staphylococcus aureus subsp. aureus MN8] gi|56749229|sp|Q6GGH4|NUSB_STAAR RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|49241903|emb|CAG40597.1| putative N utilization substance protein B [Staphylococcus aureus subsp. aureus MRSA252] gi|282327108|gb|EFB57403.1| transcription antitermination factor NusB [Staphylococcus aureus subsp. aureus WW2703/97] gi|282331226|gb|EFB60740.1| transcription antitermination factor NusB [Staphylococcus aureus subsp. aureus Btn1260] gi|282595725|gb|EFC00689.1| transcription antitermination factor NusB [Staphylococcus aureus subsp. aureus C160] gi|283790438|gb|EFC29255.1| transcription antitermination factor NusB [Staphylococcus aureus subsp. aureus A017934/97] gi|295128461|gb|EFG58095.1| transcription antitermination factor NusB [Staphylococcus aureus subsp. aureus EMRSA16] gi|297575817|gb|EFH94533.1| transcription antitermination factor NusB [Staphylococcus aureus subsp. aureus MN8] gi|315195426|gb|EFU25813.1| transcription antitermination protein NusB [Staphylococcus aureus subsp. aureus CGS00] Length = 129 Score = 142 bits (360), Expect = 1e-32, Method: Composition-based stats. Identities = 38/140 (27%), Positives = 64/140 (45%), Gaps = 13/140 (9%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 R +R+ A Q L+Q+++ ++ E F D D+ D E+ ++ G Sbjct: 3 RKESRVQAFQTLFQLEMKDSD----LTINEAISFIKDDNPDL-------DFEFIHWLVSG 51 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135 V D + +D IS L + W+ +RL ILR E++ P +V+++E V + Sbjct: 52 VKDHEPVLDETISPNL-KDWTIARLLKTDRIILRMATYEILHS-DTPAKVVMNEAVELTK 109 Query: 136 DFFYGDEPKFINAVLDKVSR 155 F D KFIN VL + + Sbjct: 110 QFSDDDHYKFINGVLSNIKK 129 >gi|121997687|ref|YP_001002474.1| NusB antitermination factor [Halorhodospira halophila SL1] gi|166215692|sp|A1WVG0|NUSB_HALHL RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|121589092|gb|ABM61672.1| NusB antitermination factor [Halorhodospira halophila SL1] Length = 155 Score = 142 bits (360), Expect = 1e-32, Method: Composition-based stats. Identities = 47/139 (33%), Positives = 66/139 (47%), Gaps = 14/139 (10%) Query: 15 RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74 RR AR VQALYQ + G S +I ++ +D+ +FR +I+ Sbjct: 9 RRSRARSKLVQALYQYAVTGASAEDIERQFLAAGLG------------DIDVAYFRELIY 56 Query: 75 GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134 GV DR +D +S+ L +LD + SILR G EL E VP V+I E V +A Sbjct: 57 GVTDRAAELDEQLSALLDR--PLVQLDPVERSILRLGAFELSERLEVPYRVVIDESVELA 114 Query: 135 HDFFYGDEPKFINAVLDKV 153 F ++IN VLD+ Sbjct: 115 RRFGADQSHRYINGVLDRF 133 >gi|29375559|ref|NP_814713.1| transcription antitermination protein NusB [Enterococcus faecalis V583] gi|256852630|ref|ZP_05558001.1| transcription antitermination protein NusB [Enterococcus faecalis T8] gi|39931895|sp|Q836W8|NUSB_ENTFA RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|29343020|gb|AAO80783.1| N utilization substance protein B [Enterococcus faecalis V583] gi|256711975|gb|EEU27012.1| transcription antitermination protein NusB [Enterococcus faecalis T8] Length = 154 Score = 142 bits (360), Expect = 1e-32, Method: Composition-based stats. Identities = 40/155 (25%), Positives = 68/155 (43%), Gaps = 3/155 (1%) Query: 6 NKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVD 65 K+ K R R A+QAL+ +D T + + Y D V + Sbjct: 2 EKRMSKTELTRHEIREKALQALFPLDFNADLTKQ---DAIDYALAYDNREIVSEDGEDLV 58 Query: 66 LEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEV 125 + +++ GV RK +D +I++ L WS RL I ILR + E++ VP V Sbjct: 59 PTYLDLLVGGVCSRKAELDEVITNHLGNNWSMQRLAKIDIVILRLAIFEMLYVSDVPNIV 118 Query: 126 IISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIK 160 ++E V ++ + KF+N VL V ++ + + Sbjct: 119 ALNEAVELSKKYSDDRSRKFVNGVLSNVMKEIDSE 153 >gi|225873914|ref|YP_002755373.1| transcription antitermination factor NusB [Acidobacterium capsulatum ATCC 51196] gi|225793742|gb|ACO33832.1| transcription antitermination factor NusB [Acidobacterium capsulatum ATCC 51196] Length = 144 Score = 142 bits (360), Expect = 1e-32, Method: Composition-based stats. Identities = 34/147 (23%), Positives = 67/147 (45%), Gaps = 11/147 (7%) Query: 10 LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF 69 + + +R +R A+Q L+Q D+ + ++ + R + + + Sbjct: 1 MTTTGKRRKSRELAMQMLFQADVGKQTPDDVRKTFWEAREEVEPDTRG----------FA 50 Query: 70 RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISE 129 + M+R++ ID LI + W SR+ + ++LR + EL+ P +II+E Sbjct: 51 EDLFRVAMNREEEIDTLIEQH-SANWKLSRMAAVDRNVLRMAIAELLGFPGTPAPIIINE 109 Query: 130 YVCIAHDFFYGDEPKFINAVLDKVSRK 156 + IA + + F+N VLD +SR+ Sbjct: 110 ALEIARRYSAPESVNFLNGVLDAISRQ 136 >gi|146321671|ref|YP_001201382.1| transcription antitermination protein NusB [Streptococcus suis 98HAH33] gi|145692477|gb|ABP92982.1| Transcription termination factor [Streptococcus suis 98HAH33] gi|292559096|gb|ADE32097.1| Antitermination protein NusB [Streptococcus suis GZ1] Length = 140 Score = 142 bits (360), Expect = 1e-32, Method: Composition-based stats. Identities = 35/146 (23%), Positives = 70/146 (47%), Gaps = 8/146 (5%) Query: 12 LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71 + + R R A+QA+ ++ + + + D E + E V + + + Sbjct: 2 MKNNRHALRKCALQAIVSLEFGQEPV-----QAAQFSYLYDREEEQEGVEIPL---FLLN 53 Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131 +++GV D + +D +SS L W+ RL +I +I+R G+ E++ P V ++E + Sbjct: 54 LVNGVADYRDDLDKELSSRLKAGWTLDRLTLIDKNIMRLGLFEILHFEETPDRVAVNEAI 113 Query: 132 CIAHDFFYGDEPKFINAVLDKVSRKE 157 +A +F KF+N VL + ++E Sbjct: 114 ELAKEFSDESSAKFVNGVLSQFIKEE 139 >gi|116872790|ref|YP_849571.1| transcription antitermination protein NusB [Listeria welshimeri serovar 6b str. SLCC5334] gi|123466249|sp|A0AIG0|NUSB_LISW6 RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|116741668|emb|CAK20792.1| N utilization substance protein B/transcription termination factor [Listeria welshimeri serovar 6b str. SLCC5334] Length = 128 Score = 142 bits (360), Expect = 1e-32, Method: Composition-based stats. Identities = 39/144 (27%), Positives = 65/144 (45%), Gaps = 17/144 (11%) Query: 15 RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74 +R AR A+QAL+QI++ S + I +++ ++ ++ Sbjct: 2 KRREAREKALQALFQIELNEMSLDQAI----------------KNIMEDEQDDYMEKLVE 45 Query: 75 GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134 GVM K ID +I L W RL + S+LR V E+ VP V ++E + IA Sbjct: 46 GVMANKAEIDAIIEPNLD-NWRMDRLSKVDLSLLRLSVYEINYLDDVPNRVSLNESIEIA 104 Query: 135 HDFFYGDEPKFINAVLDKVSRKEE 158 + KFIN VL ++ +++ Sbjct: 105 KIYSDEKSSKFINGVLANIAPEDK 128 >gi|223933712|ref|ZP_03625687.1| NusB antitermination factor [Streptococcus suis 89/1591] gi|253752490|ref|YP_003025631.1| N utilization substance protein B homolog (NusB protein) [Streptococcus suis SC84] gi|253754316|ref|YP_003027457.1| N utilization substance protein B homolog (NusB protein) [Streptococcus suis P1/7] gi|253756250|ref|YP_003029390.1| N utilization substance protein B homolog (NusB protein) [Streptococcus suis BM407] gi|302024430|ref|ZP_07249641.1| transcription antitermination protein NusB [Streptococcus suis 05HAS68] gi|330833433|ref|YP_004402258.1| transcription antitermination protein NusB [Streptococcus suis ST3] gi|223897628|gb|EEF64014.1| NusB antitermination factor [Streptococcus suis 89/1591] gi|251816779|emb|CAZ52422.1| N utilization substance protein B homolog (NusB protein) [Streptococcus suis SC84] gi|251818714|emb|CAZ56550.1| N utilization substance protein B homolog (NusB protein) [Streptococcus suis BM407] gi|251820562|emb|CAR47318.1| N utilization substance protein B homolog (NusB protein) [Streptococcus suis P1/7] gi|319758898|gb|ADV70840.1| transcription antitermination protein NusB [Streptococcus suis JS14] gi|329307656|gb|AEB82072.1| transcription antitermination protein NusB [Streptococcus suis ST3] Length = 139 Score = 142 bits (360), Expect = 1e-32, Method: Composition-based stats. Identities = 35/146 (23%), Positives = 70/146 (47%), Gaps = 8/146 (5%) Query: 12 LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71 + + R R A+QA+ ++ + + + D E + E V + + + Sbjct: 1 MKNNRHALRKCALQAIVSLEFGQEPV-----QAAQFSYLYDREEEQEGVEIPL---FLLN 52 Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131 +++GV D + +D +SS L W+ RL +I +I+R G+ E++ P V ++E + Sbjct: 53 LVNGVADYRDDLDKELSSRLKAGWTLDRLTLIDKNIMRLGLFEILHFEETPDRVAVNEAI 112 Query: 132 CIAHDFFYGDEPKFINAVLDKVSRKE 157 +A +F KF+N VL + ++E Sbjct: 113 ELAKEFSDESSAKFVNGVLSQFIKEE 138 >gi|269836410|ref|YP_003318638.1| NusB antitermination factor [Sphaerobacter thermophilus DSM 20745] gi|269785673|gb|ACZ37816.1| NusB antitermination factor [Sphaerobacter thermophilus DSM 20745] Length = 140 Score = 142 bits (360), Expect = 1e-32, Method: Composition-based stats. Identities = 36/139 (25%), Positives = 63/139 (45%), Gaps = 12/139 (8%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 R AR A+Q LY+ D+ +++++ Y + + + +I G Sbjct: 7 RHQARTLALQILYEADVAQHPASDVLARYTS-----------DLSLPQPVRRYVERLISG 55 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135 VM+ + ID I + + +L I +ILR + EL H VPV+ I+E V +A Sbjct: 56 VMEDLEKIDAEIGAA-APAFPVDQLPPIDRNILRIAIYELRNEHDVPVKAAINEAVELAK 114 Query: 136 DFFYGDEPKFINAVLDKVS 154 F + +F+N VL ++ Sbjct: 115 RFGGDNSSRFVNGVLGTIA 133 >gi|94311627|ref|YP_584837.1| transcription antitermination protein NusB [Cupriavidus metallidurans CH34] gi|119390804|sp|Q1LJV8|NUSB_RALME RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|93355479|gb|ABF09568.1| transcription termination factor, N utilization substance protein B-like protein(Protein nusB) [Cupriavidus metallidurans CH34] Length = 171 Score = 142 bits (360), Expect = 1e-32, Method: Composition-based stats. Identities = 34/158 (21%), Positives = 60/158 (37%), Gaps = 15/158 (9%) Query: 4 QDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLH 63 + K K + RR R A+Q LYQ + I + + Sbjct: 24 TEPKAPPKSARRRS--RELALQGLYQWLLNRNDIGAIQAHLHD-----------AQGFNK 70 Query: 64 VDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPV 123 D E F ++ G + + + L + L + + L G EL+ C +P Sbjct: 71 ADREHFDALLGGAVREEARLTAAFEPFLDR--TVDELSPVERAALLVGSYELVHCLDIPY 128 Query: 124 EVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKR 161 +V+I+E V + F + K++N VLDK++ + Sbjct: 129 KVVINEAVELTKTFGGVEGYKYVNGVLDKLAAQVRAPE 166 >gi|118579723|ref|YP_900973.1| NusB antitermination factor [Pelobacter propionicus DSM 2379] gi|166215707|sp|A1ANJ5|NUSB_PELPD RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|118502433|gb|ABK98915.1| NusB antitermination factor [Pelobacter propionicus DSM 2379] Length = 143 Score = 142 bits (360), Expect = 1e-32, Method: Composition-based stats. Identities = 38/150 (25%), Positives = 69/150 (46%), Gaps = 16/150 (10%) Query: 16 RGIARLAAVQALYQIDIIGC-STTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74 R +R A+Q LY +D E++ + + +D + ++ Sbjct: 4 RRESRELALQMLYALDSNASVGPREMLQMFREEQPVSDRL-----------RLFAEELVQ 52 Query: 75 GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134 GV++ + ID I ++ WS SR+ + +I+R EL+ +P +V I+E + IA Sbjct: 53 GVLEHRPAIDAAI-KARSKNWSLSRMPKVDLNIMRLATYELMFRGDIPKKVSINEAIEIA 111 Query: 135 HDFFYGDEPKFINAVLDKV---SRKEEIKR 161 F D P F+N +LD++ ++ EE R Sbjct: 112 RRFGDKDSPAFVNGILDEIPSCAKAEEPDR 141 >gi|88856244|ref|ZP_01130904.1| transcription termination factor [marine actinobacterium PHSC20C1] gi|88814563|gb|EAR24425.1| transcription termination factor [marine actinobacterium PHSC20C1] Length = 137 Score = 142 bits (360), Expect = 1e-32, Method: Composition-based stats. Identities = 33/143 (23%), Positives = 62/143 (43%), Gaps = 9/143 (6%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 R AR A+ +Y D+ G S E ++ ++ + + + ++ G Sbjct: 4 RSKARKRALDLMYGADVRGESINEALA--------TESSRALSDPARATSWAYAQQVVVG 55 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135 + + ID LI + ++ W +R+ + ++LR + E++ VP V ISE V A Sbjct: 56 ITEHGDEIDELIETY-SQGWPLNRMPAVDRALLRIALWEILYNDEVPAGVAISEAVESAK 114 Query: 136 DFFYGDEPKFINAVLDKVSRKEE 158 D FIN +L +++ E Sbjct: 115 VHSTEDSAGFINGLLGRIAASNE 137 >gi|255971431|ref|ZP_05422017.1| antitermination protein NusB [Enterococcus faecalis T1] gi|255974044|ref|ZP_05424630.1| antitermination protein NusB [Enterococcus faecalis T2] gi|256617900|ref|ZP_05474746.1| antitermination protein NusB [Enterococcus faecalis ATCC 4200] gi|256761733|ref|ZP_05502313.1| antitermination protein NusB [Enterococcus faecalis T3] gi|256957069|ref|ZP_05561240.1| antitermination protein NusB [Enterococcus faecalis DS5] gi|256960159|ref|ZP_05564330.1| antitermination protein NusB [Enterococcus faecalis Merz96] gi|256962598|ref|ZP_05566769.1| antitermination protein NusB [Enterococcus faecalis HIP11704] gi|257077865|ref|ZP_05572226.1| antitermination protein NusB [Enterococcus faecalis JH1] gi|257081230|ref|ZP_05575591.1| antitermination protein NusB [Enterococcus faecalis E1Sol] gi|257083886|ref|ZP_05578247.1| antitermination protein NusB [Enterococcus faecalis Fly1] gi|257086336|ref|ZP_05580697.1| antitermination protein NusB [Enterococcus faecalis D6] gi|257089386|ref|ZP_05583747.1| antitermination protein nusB [Enterococcus faecalis CH188] gi|257415595|ref|ZP_05592589.1| antitermination protein NusB [Enterococcus faecalis AR01/DG] gi|257418568|ref|ZP_05595562.1| transcription antitermination protein nusB [Enterococcus faecalis T11] gi|257421226|ref|ZP_05598216.1| transcription antitermination protein nusB [Enterococcus faecalis X98] gi|294780567|ref|ZP_06745930.1| transcription antitermination factor NusB [Enterococcus faecalis PC1.1] gi|300859628|ref|ZP_07105716.1| transcription antitermination factor NusB [Enterococcus faecalis TUSoD Ef11] gi|255962449|gb|EET94925.1| antitermination protein NusB [Enterococcus faecalis T1] gi|255966916|gb|EET97538.1| antitermination protein NusB [Enterococcus faecalis T2] gi|256597427|gb|EEU16603.1| antitermination protein NusB [Enterococcus faecalis ATCC 4200] gi|256682984|gb|EEU22679.1| antitermination protein NusB [Enterococcus faecalis T3] gi|256947565|gb|EEU64197.1| antitermination protein NusB [Enterococcus faecalis DS5] gi|256950655|gb|EEU67287.1| antitermination protein NusB [Enterococcus faecalis Merz96] gi|256953094|gb|EEU69726.1| antitermination protein NusB [Enterococcus faecalis HIP11704] gi|256985895|gb|EEU73197.1| antitermination protein NusB [Enterococcus faecalis JH1] gi|256989260|gb|EEU76562.1| antitermination protein NusB [Enterococcus faecalis E1Sol] gi|256991916|gb|EEU79218.1| antitermination protein NusB [Enterococcus faecalis Fly1] gi|256994366|gb|EEU81668.1| antitermination protein NusB [Enterococcus faecalis D6] gi|256998198|gb|EEU84718.1| antitermination protein nusB [Enterococcus faecalis CH188] gi|257157423|gb|EEU87383.1| antitermination protein NusB [Enterococcus faecalis ARO1/DG] gi|257160396|gb|EEU90356.1| transcription antitermination protein nusB [Enterococcus faecalis T11] gi|257163050|gb|EEU93010.1| transcription antitermination protein nusB [Enterococcus faecalis X98] gi|294452394|gb|EFG20833.1| transcription antitermination factor NusB [Enterococcus faecalis PC1.1] gi|295113845|emb|CBL32482.1| transcription antitermination factor NusB [Enterococcus sp. 7L76] gi|300850446|gb|EFK78195.1| transcription antitermination factor NusB [Enterococcus faecalis TUSoD Ef11] gi|323480217|gb|ADX79656.1| transcription antitermination factor NusB [Enterococcus faecalis 62] Length = 150 Score = 142 bits (360), Expect = 1e-32, Method: Composition-based stats. Identities = 39/150 (26%), Positives = 66/150 (44%), Gaps = 3/150 (2%) Query: 11 KLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFR 70 K R R A+QAL+ +D T + + Y D V + + Sbjct: 3 KTELTRHEIREKALQALFPLDFNADLTKQ---DAIDYALAYDNREIVSEDGEDLVPTYLD 59 Query: 71 VIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEY 130 +++ GV RK +D +I++ L WS RL I ILR + E++ VP V ++E Sbjct: 60 LLVGGVCSRKAELDEVITNHLGNNWSMQRLAKIDIVILRLAIFEMLYVSDVPNIVALNEA 119 Query: 131 VCIAHDFFYGDEPKFINAVLDKVSRKEEIK 160 V ++ + KF+N VL V ++ + + Sbjct: 120 VELSKKYSDDRSRKFVNGVLSNVMKEIDSE 149 >gi|299143829|ref|ZP_07036909.1| transcription antitermination factor NusB [Peptoniphilus sp. oral taxon 386 str. F0131] gi|298518314|gb|EFI42053.1| transcription antitermination factor NusB [Peptoniphilus sp. oral taxon 386 str. F0131] Length = 141 Score = 142 bits (360), Expect = 1e-32, Method: Composition-based stats. Identities = 39/147 (26%), Positives = 69/147 (46%), Gaps = 12/147 (8%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 R AR+ +Q LYQ+DI +++ ++ + ++ E D + I Sbjct: 3 RKKARIGQMQVLYQMDITDDFSSDGLNTFLENFEFSEEEKD-----------YINSTIPE 51 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135 ++ ++ID I S L E WS +RL + +LR + E++ +P EV I+E V I+ Sbjct: 52 IIKNLENIDQTIQSHL-EGWSLNRLAKVDKEVLRIAIYEILYRDDIPEEVSINEAVEISK 110 Query: 136 DFFYGDEPKFINAVLDKVSRKEEIKRS 162 F + KFIN +L + R ++ Sbjct: 111 QFGSSESSKFINGILGSIYRSMHVENQ 137 >gi|220904887|ref|YP_002480199.1| NusB antitermination factor [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] gi|254772632|sp|B8J194|NUSB_DESDA RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|219869186|gb|ACL49521.1| NusB antitermination factor [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] Length = 164 Score = 142 bits (360), Expect = 1e-32, Method: Composition-based stats. Identities = 41/160 (25%), Positives = 69/160 (43%), Gaps = 5/160 (3%) Query: 11 KLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFR 70 K + RRG R A Q LY + + E + ++R D E + V+ F Sbjct: 5 KNATRRGE-RELAFQVLYGLSFTPARSLEELR--RSFRMSPDNLARSEESGVPVEACGFS 61 Query: 71 -VIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISE 129 ++ GV +D IS + W R+ + ++LR EL+ VP +V I+E Sbjct: 62 WELVEGVWSNSSALDETISRF-SHNWRVDRMGRVELTLLRLAAYELVFRADVPPKVAINE 120 Query: 130 YVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRSGCVSAIT 169 + ++ F G+ FIN +LD V++ E +A + Sbjct: 121 ALELSRQFGEGNAKNFINGILDAVAKALENGELQRCAAPS 160 >gi|257063533|ref|YP_003143205.1| transcription antitermination factor NusB [Slackia heliotrinireducens DSM 20476] gi|256791186|gb|ACV21856.1| transcription antitermination factor NusB [Slackia heliotrinireducens DSM 20476] Length = 183 Score = 142 bits (359), Expect = 1e-32, Method: Composition-based stats. Identities = 40/146 (27%), Positives = 70/146 (47%), Gaps = 14/146 (9%) Query: 10 LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF 69 + + R + R AA+Q LY+ DI+G +++ E A + + Sbjct: 1 MAKRYDRTLGRRAALQVLYESDILGTPVDKVVDEGVVPEEAALND-------------YA 47 Query: 70 RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISE 129 R ++ GV ID IS ++ W+ R+ ++ ++LR V E+ VPV V I+E Sbjct: 48 RRLLLGVASHITDIDRQISKS-SKNWAIDRMPLVDRALLRITVFEMQHVDEVPVAVSINE 106 Query: 130 YVCIAHDFFYGDEPKFINAVLDKVSR 155 V +A DF D +F+N +L +++R Sbjct: 107 AVELAKDFGGDDTYRFVNGILGRIAR 132 >gi|228475963|ref|ZP_04060671.1| transcription antitermination factor NusB [Staphylococcus hominis SK119] gi|314936353|ref|ZP_07843700.1| transcription antitermination factor NusB [Staphylococcus hominis subsp. hominis C80] gi|228269786|gb|EEK11266.1| transcription antitermination factor NusB [Staphylococcus hominis SK119] gi|313654972|gb|EFS18717.1| transcription antitermination factor NusB [Staphylococcus hominis subsp. hominis C80] Length = 128 Score = 142 bits (359), Expect = 1e-32, Method: Composition-based stats. Identities = 41/138 (29%), Positives = 60/138 (43%), Gaps = 13/138 (9%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 R +R A Q L+Q+++ ++ E F D Y +D E+ ++ G Sbjct: 3 RKESRKQAFQTLFQLEMKNTD----LTINEAINFIKD-------DYPDLDFEFIHWLVTG 51 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135 V D +Q +D I L + WS RL ILR EL+ P +VII+E V + Sbjct: 52 VKDHEQVLDQSIEPKL-KDWSIQRLLKTDRIILRMATFELLHS-DTPPKVIINEAVELTK 109 Query: 136 DFFYGDEPKFINAVLDKV 153 F KFIN VL + Sbjct: 110 QFSDEGHYKFINGVLSNI 127 >gi|294102024|ref|YP_003553882.1| NusB antitermination factor [Aminobacterium colombiense DSM 12261] gi|293617004|gb|ADE57158.1| NusB antitermination factor [Aminobacterium colombiense DSM 12261] Length = 158 Score = 142 bits (359), Expect = 1e-32, Method: Composition-based stats. Identities = 42/144 (29%), Positives = 67/144 (46%), Gaps = 12/144 (8%) Query: 12 LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71 L +R +R A+Q LY +DI E ++E + D E DV + + + Sbjct: 6 LPQKRRRSREIAIQILYALDIRNS---EKVNEMFSLYPFGDEEPDV--------VSYASL 54 Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131 ++ GV + + ID LI + W R+ + + LR + E I +PV V ISE V Sbjct: 55 LVKGVWEARFEIDTLIRKHVV-GWRPERMVAVDRAALRLAIYEGIIKQMIPVPVAISEAV 113 Query: 132 CIAHDFFYGDEPKFINAVLDKVSR 155 +A F + +F+N VL K+ R Sbjct: 114 ELAKTFGTDESGRFVNGVLGKIVR 137 >gi|309780817|ref|ZP_07675558.1| transcription antitermination factor NusB [Ralstonia sp. 5_7_47FAA] gi|308920499|gb|EFP66155.1| transcription antitermination factor NusB [Ralstonia sp. 5_7_47FAA] Length = 155 Score = 142 bits (359), Expect = 1e-32, Method: Composition-based stats. Identities = 32/139 (23%), Positives = 57/139 (41%), Gaps = 13/139 (9%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 R AR A+Q LYQ + + + L + D F ++HG Sbjct: 18 RRRARELALQGLYQWLLNRNDPGVVEA-----------HLQDAQGFNKADRAHFDALLHG 66 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135 + + + + L + L + + L G EL+ C +P +V+I+E V + Sbjct: 67 AIREETTLTEAFTPYLDR--PVAELSPVERAALLVGAYELVHCVDIPYKVVINEAVELTK 124 Query: 136 DFFYGDEPKFINAVLDKVS 154 F + K++N VLDK++ Sbjct: 125 TFGGVEGYKYVNGVLDKLA 143 >gi|218888175|ref|YP_002437496.1| NusB antitermination factor [Desulfovibrio vulgaris str. 'Miyazaki F'] gi|226738898|sp|B8DJF1|NUSB_DESVM RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|218759129|gb|ACL10028.1| NusB antitermination factor [Desulfovibrio vulgaris str. 'Miyazaki F'] Length = 165 Score = 142 bits (359), Expect = 1e-32, Method: Composition-based stats. Identities = 39/166 (23%), Positives = 67/166 (40%), Gaps = 12/166 (7%) Query: 1 MTIQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEII-SEYETYRFCADTELDVES 59 M Q K R R A Q LY + ++ + + Y AD + E Sbjct: 1 MANQGKKPT------RRSERALAFQVLYGLSFTPATSEGALRAAYAASPDVADRNAEDEK 54 Query: 60 VYLHVDLE----WFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLEL 115 + +IHGV + +D +S ++ W R+ + ++LR V E+ Sbjct: 55 ADRQAPATAPQGYAWEVIHGVWKTQAELDEAVSGF-SQNWRVERMGRVELTLLRIAVYEM 113 Query: 116 IECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKR 161 + VP +V ++E + ++ F + FIN +LD V+R E R Sbjct: 114 LFRDDVPAKVAMNEAIELSKQFGDDNSRGFINGILDAVARAVESGR 159 >gi|323140958|ref|ZP_08075870.1| transcription antitermination factor NusB [Phascolarctobacterium sp. YIT 12067] gi|322414561|gb|EFY05368.1| transcription antitermination factor NusB [Phascolarctobacterium sp. YIT 12067] Length = 154 Score = 142 bits (359), Expect = 2e-32, Method: Composition-based stats. Identities = 44/153 (28%), Positives = 71/153 (46%), Gaps = 13/153 (8%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVD---------- 65 R +AR A+QAL+QID G + + E V+ Sbjct: 3 RRLAREVALQALFQIDFTGNEVEQAVDAALDEHEELHPEAAVDKALDQHKELGAASARNY 62 Query: 66 -LEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHS-VPV 123 ++ V+++GV++ K+ ID ++SC T W+ R+ +ILR V E+ + Sbjct: 63 VKKYSMVLVNGVVENKEAIDATLNSCAT-DWTVERMPATDRNILRVAVFEMRHEKPALAA 121 Query: 124 EVIISEYVCIAHDFFYGDEPKFINAVLDKVSRK 156 V I+E V IA + + P+FIN VL K++RK Sbjct: 122 GVAINEAVEIAKAYGTEESPRFINGVLGKLARK 154 >gi|209559915|ref|YP_002286387.1| transcription antitermination protein NusB [Streptococcus pyogenes NZ131] gi|238055478|sp|B5XI30|NUSB_STRPZ RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|209541116|gb|ACI61692.1| N utilization substance B-like protein [Streptococcus pyogenes NZ131] Length = 150 Score = 142 bits (359), Expect = 2e-32, Method: Composition-based stats. Identities = 35/143 (24%), Positives = 69/143 (48%), Gaps = 6/143 (4%) Query: 14 HRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVII 73 + R R A QAL+ I++ E+++ + + D ++ L + + + ++ Sbjct: 7 NSRRDLRERAFQALFNIEMG----AELLAA-SQFAYGYDKVTGEDAQVLELPI-FLLSLV 60 Query: 74 HGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCI 133 GV + K+ +D LIS+ L + WS RL + ++LR G+ E+ P V ++E + + Sbjct: 61 TGVNNHKEELDNLISTHLKKGWSLERLTLTDKTLLRLGLFEIKYFDETPDRVALNEIIEV 120 Query: 134 AHDFFYGDEPKFINAVLDKVSRK 156 A + KFIN +L + + Sbjct: 121 AKKYSDETSAKFINGLLSQYVSE 143 >gi|313201935|ref|YP_004040593.1| nusb antitermination factor [Methylovorus sp. MP688] gi|312441251|gb|ADQ85357.1| NusB antitermination factor [Methylovorus sp. MP688] Length = 158 Score = 142 bits (359), Expect = 2e-32, Method: Composition-based stats. Identities = 44/170 (25%), Positives = 73/170 (42%), Gaps = 20/170 (11%) Query: 1 MTIQDNK----KDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELD 56 M+ D K K +K S R +R A++ +Y+ + I+ E Sbjct: 1 MSDTDQKPGDAKPVKASRNRRKSRELALKGIYRNLLNQADFRAILRELAD---------- 50 Query: 57 VESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELI 116 E + D E+ R ++ GV+ ++ +D I+ + L I IL ELI Sbjct: 51 -EPEFDKADQEYLRKLLDGVLAEREELDRRIAVFVDR--PMQELSPIEHGILCLSAYELI 107 Query: 117 ECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRSGCVS 166 S+P V I+E V +A + D K++N VLDK++ + R G V+ Sbjct: 108 FDLSIPYRVAINEGVELAKIYGGTDGHKYVNGVLDKLAAEA---RPGEVN 154 >gi|241767422|ref|ZP_04765122.1| NusB antitermination factor [Acidovorax delafieldii 2AN] gi|241361805|gb|EER58071.1| NusB antitermination factor [Acidovorax delafieldii 2AN] Length = 174 Score = 142 bits (359), Expect = 2e-32, Method: Composition-based stats. Identities = 40/153 (26%), Positives = 68/153 (44%), Gaps = 14/153 (9%) Query: 7 KKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDL 66 +K S+ R AR A+QALYQ + G I D + + D Sbjct: 29 RKAASKSN-RSRAREFALQALYQHIVGGNEAAAI-----------DAFTRDLAGFHKADA 76 Query: 67 EWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVI 126 + ++HG +D +D LI+ L K + + I + + GV E C VP V+ Sbjct: 77 AHYDAVLHGCIDAAADLDALITPLLDRK--MAEISPIERATMWIGVYEFQHCLDVPWRVV 134 Query: 127 ISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEI 159 ++E + +A +F D K++NAVL+ ++ + Sbjct: 135 LNECIELAKEFGGTDGHKYVNAVLNGLAPRLRA 167 >gi|254492114|ref|ZP_05105289.1| transcription antitermination factor NusB [Methylophaga thiooxidans DMS010] gi|224462666|gb|EEF78940.1| transcription antitermination factor NusB [Methylophaga thiooxydans DMS010] Length = 150 Score = 142 bits (359), Expect = 2e-32, Method: Composition-based stats. Identities = 39/138 (28%), Positives = 65/138 (47%), Gaps = 13/138 (9%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 R AR AAVQALYQ + + + E+ T + +D ++F +I G Sbjct: 7 RTKARRAAVQALYQALVNNETPQKAGLEFVTAEYAD-----------KIDRKYFTTLIEG 55 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135 + +Q ID +S + + +D + S+LR V E + +P V+++E V +A Sbjct: 56 TIKYQQAIDAELSEAVDR--DLNAVDPVEISVLRLAVFEFMHLPEIPYRVVLNEAVELAK 113 Query: 136 DFFYGDEPKFINAVLDKV 153 F K++N VLDK+ Sbjct: 114 SFGGEQGHKYVNGVLDKM 131 >gi|71904194|ref|YP_280997.1| transcription antitermination protein NusB [Streptococcus pyogenes MGAS6180] gi|94989179|ref|YP_597280.1| transcription antitermination protein NusB [Streptococcus pyogenes MGAS9429] gi|94993067|ref|YP_601166.1| transcription antitermination protein NusB [Streptococcus pyogenes MGAS2096] gi|71803289|gb|AAX72642.1| N utilization substance protein B [Streptococcus pyogenes MGAS6180] gi|94542687|gb|ABF32736.1| N utilization substance protein B [Streptococcus pyogenes MGAS9429] gi|94546575|gb|ABF36622.1| N utilization substance protein B [Streptococcus pyogenes MGAS2096] Length = 156 Score = 142 bits (359), Expect = 2e-32, Method: Composition-based stats. Identities = 35/143 (24%), Positives = 69/143 (48%), Gaps = 6/143 (4%) Query: 14 HRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVII 73 + R R A QAL+ I++ E+++ + + D ++ L + + + ++ Sbjct: 13 NSRRDLRERAFQALFNIEMG----AELLAA-SQFAYGYDKVTGEDAQVLELPI-FLLSLV 66 Query: 74 HGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCI 133 GV + K+ +D LIS+ L + WS RL + ++LR G+ E+ P V ++E + + Sbjct: 67 TGVNNHKEELDNLISTHLKKGWSLERLTLTDKTLLRLGLFEIKYFDETPDRVALNEIIEV 126 Query: 134 AHDFFYGDEPKFINAVLDKVSRK 156 A + KFIN +L + + Sbjct: 127 AKKYSDETSAKFINGLLSQYVSE 149 >gi|73540472|ref|YP_294992.1| transcription antitermination protein NusB [Ralstonia eutropha JMP134] gi|119390803|sp|Q474N5|NUSB_RALEJ RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|72117885|gb|AAZ60148.1| NusB antitermination factor [Ralstonia eutropha JMP134] Length = 167 Score = 142 bits (359), Expect = 2e-32, Method: Composition-based stats. Identities = 39/165 (23%), Positives = 66/165 (40%), Gaps = 18/165 (10%) Query: 4 QDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLH 63 + K K + RR R A+Q LYQ + I + + Sbjct: 20 TEAKAPPKSARRRS--RELALQGLYQWLLNRNDIGAIQAHLHD-----------AQGFNK 66 Query: 64 VDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPV 123 D E F +++G + + + L K L + + L G EL+ C +P Sbjct: 67 ADSEHFDALLNGAVREEARLTAAFEPFLDRK--VEELSPVERAALLVGSYELVHCVDIPY 124 Query: 124 EVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRSGCVSAI 168 +V+I+E V + F + K++N VLDK++ + RS V+A Sbjct: 125 KVVINEAVELTKTFGGVEGYKYVNGVLDKLAAQV---RSAEVAAR 166 >gi|193212152|ref|YP_001998105.1| NusB antitermination factor [Chlorobaculum parvum NCIB 8327] gi|238692614|sp|B3QLL5|NUSB_CHLP8 RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|193085629|gb|ACF10905.1| NusB antitermination factor [Chlorobaculum parvum NCIB 8327] Length = 164 Score = 142 bits (359), Expect = 2e-32, Method: Composition-based stats. Identities = 37/153 (24%), Positives = 69/153 (45%), Gaps = 14/153 (9%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 R R +QALY +++ T + T D +++F ++ Sbjct: 5 RRQLREKIIQALYTLELRDVDTDSATNWLLTKEMADDPNA----------MKFFNHLMKS 54 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135 ++D ++ ID I+ T W +R+ +I +ILR + E++ C +P +V I+E + IA Sbjct: 55 IIDHREEIDRHIAKH-TFNWDMNRIAIIDKNILRMALAEILYCEDIPPKVSINEAIEIAK 113 Query: 136 DF-FYGDEPKFINAVLDKVSRKEEIKRSGCVSA 167 F KF+N +LD + ++K G + Sbjct: 114 KFNSTEKSSKFVNGILDAIF--NDLKAEGRIQK 144 >gi|113868812|ref|YP_727301.1| transcription antitermination protein NusB [Ralstonia eutropha H16] gi|122946671|sp|Q0K7T8|NUSB_RALEH RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|113527588|emb|CAJ93933.1| transcription termination factor [Ralstonia eutropha H16] Length = 172 Score = 142 bits (359), Expect = 2e-32, Method: Composition-based stats. Identities = 35/151 (23%), Positives = 60/151 (39%), Gaps = 15/151 (9%) Query: 4 QDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLH 63 + K K + RR R A+Q LYQ + I + + Sbjct: 25 TEAKAPPKSARRRS--RELALQGLYQWLLNRNDIGAIQAHLHD-----------AQGFNK 71 Query: 64 VDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPV 123 D E F +++G + + + L K L + + L G EL+ C +P Sbjct: 72 ADREHFDALLNGAVREEARLTAAFEPFLDRK--VEELSPVERAALLVGSYELVHCLDIPY 129 Query: 124 EVIISEYVCIAHDFFYGDEPKFINAVLDKVS 154 +V+I+E V + F + K++N VLDK++ Sbjct: 130 KVVINEAVELTKTFGGVEGYKYVNGVLDKLA 160 >gi|289434640|ref|YP_003464512.1| transcription antitermination factor [Listeria seeligeri serovar 1/2b str. SLCC3954] gi|315303024|ref|ZP_07873735.1| transcription antitermination factor NusB [Listeria ivanovii FSL F6-596] gi|289170884|emb|CBH27426.1| transcription antitermination factor [Listeria seeligeri serovar 1/2b str. SLCC3954] gi|313628606|gb|EFR97028.1| transcription antitermination factor NusB [Listeria ivanovii FSL F6-596] gi|313633359|gb|EFS00202.1| transcription antitermination factor NusB [Listeria seeligeri FSL N1-067] gi|313638045|gb|EFS03323.1| transcription antitermination factor NusB [Listeria seeligeri FSL S4-171] Length = 128 Score = 142 bits (359), Expect = 2e-32, Method: Composition-based stats. Identities = 39/144 (27%), Positives = 65/144 (45%), Gaps = 17/144 (11%) Query: 15 RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74 +R AR A+QAL+QI++ S + I +++ ++ ++ Sbjct: 2 KRREAREKALQALFQIELNEMSLDQAI----------------KNIMEDEQDDYMEKLVE 45 Query: 75 GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134 GVM K ID +I L W RL + S+LR V E+ VP V ++E + IA Sbjct: 46 GVMANKAEIDAIIEPNLD-NWRMDRLSKVDLSLLRLSVYEINYLSDVPNRVSLNESIEIA 104 Query: 135 HDFFYGDEPKFINAVLDKVSRKEE 158 + KFIN VL ++ +++ Sbjct: 105 KIYSDEKSSKFINGVLANIAPEDK 128 >gi|290893532|ref|ZP_06556515.1| transcription antitermination protein NusB [Listeria monocytogenes FSL J2-071] gi|290556877|gb|EFD90408.1| transcription antitermination protein NusB [Listeria monocytogenes FSL J2-071] Length = 128 Score = 142 bits (358), Expect = 2e-32, Method: Composition-based stats. Identities = 39/144 (27%), Positives = 65/144 (45%), Gaps = 17/144 (11%) Query: 15 RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74 +R AR A+QAL+QI++ S + I +++ ++ ++ Sbjct: 2 KRREAREKALQALFQIELNEMSLDQAI----------------KNIMEDERDDYMEKLVE 45 Query: 75 GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134 GVM K ID +I L W RL + S+LR V E+ VP V ++E + IA Sbjct: 46 GVMANKVEIDAIIEPNLD-NWRIDRLSKVDLSLLRLSVYEIKYLDDVPNRVSLNESIEIA 104 Query: 135 HDFFYGDEPKFINAVLDKVSRKEE 158 + KFIN VL ++ +++ Sbjct: 105 KIYSDEKSSKFINGVLANIAPEDK 128 >gi|19746754|ref|NP_607890.1| transcription antitermination protein NusB [Streptococcus pyogenes MGAS8232] gi|21911108|ref|NP_665376.1| transcription antitermination protein NusB [Streptococcus pyogenes MGAS315] gi|139473181|ref|YP_001127896.1| transcription antitermination protein NusB [Streptococcus pyogenes str. Manfredo] gi|54037927|sp|P65585|NUSB_STRP8 RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|54041677|sp|P65584|NUSB_STRP3 RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|119390833|sp|Q1JA39|NUSB_STRPB RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|119390834|sp|Q1JK87|NUSB_STRPC RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|119390837|sp|Q48RL8|NUSB_STRPM RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|166215723|sp|A2RCS4|NUSB_STRPG RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|19748985|gb|AAL98389.1| putative transcriptional terminator [Streptococcus pyogenes MGAS8232] gi|21905318|gb|AAM80179.1| putative transcriptional terminator [Streptococcus pyogenes MGAS315] gi|134271427|emb|CAM29647.1| N utilization substance protein B homolog (NusB protein) [Streptococcus pyogenes str. Manfredo] Length = 150 Score = 142 bits (358), Expect = 2e-32, Method: Composition-based stats. Identities = 35/143 (24%), Positives = 69/143 (48%), Gaps = 6/143 (4%) Query: 14 HRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVII 73 + R R A QAL+ I++ E+++ + + D ++ L + + + ++ Sbjct: 7 NSRRDLRERAFQALFNIEMG----AELLAA-SQFAYGYDKVTGEDAQVLELPI-FLLSLV 60 Query: 74 HGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCI 133 GV + K+ +D LIS+ L + WS RL + ++LR G+ E+ P V ++E + + Sbjct: 61 TGVNNHKEELDNLISTHLKKGWSLERLTLTDKTLLRLGLFEIKYFDETPDRVALNEIIEV 120 Query: 134 AHDFFYGDEPKFINAVLDKVSRK 156 A + KFIN +L + + Sbjct: 121 AKKYSDETSAKFINGLLSQYVSE 143 >gi|242278127|ref|YP_002990256.1| NusB antitermination factor [Desulfovibrio salexigens DSM 2638] gi|242121021|gb|ACS78717.1| NusB antitermination factor [Desulfovibrio salexigens DSM 2638] Length = 155 Score = 142 bits (358), Expect = 2e-32, Method: Composition-based stats. Identities = 36/150 (24%), Positives = 70/150 (46%), Gaps = 15/150 (10%) Query: 16 RGIARLAAVQALYQIDI----IGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71 R R+ A Q LY + G +T I ++ + +L + + R Sbjct: 10 RRKGRVLAFQVLYGLSFVPPHGGWTTERIYNQSPAVIRETEEDL----------ILFARE 59 Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131 ++ G+ + ++ +D +I ++ W R+ + +ILR V EL+ +P++V I+E + Sbjct: 60 LLIGIWNAQEELDEVIGRY-SKHWKIERIAKVELAILRLAVYELVHKPDIPLKVGINEGI 118 Query: 132 CIAHDFFYGDEPKFINAVLDKVSRKEEIKR 161 +A F G+ FIN +LD V+R + + Sbjct: 119 ELAKKFGDGNSRNFINGILDAVARDIDTGK 148 >gi|325266364|ref|ZP_08133042.1| transcription antitermination factor NusB [Kingella denitrificans ATCC 33394] gi|324982157|gb|EGC17791.1| transcription antitermination factor NusB [Kingella denitrificans ATCC 33394] Length = 148 Score = 142 bits (358), Expect = 2e-32, Method: Composition-based stats. Identities = 42/161 (26%), Positives = 66/161 (40%), Gaps = 17/161 (10%) Query: 5 DNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHV 64 K K S RR AR AVQALYQ I E+ + + + + Sbjct: 2 SEPKKTKKSPRRR-AREFAVQALYQTAINKIPAEEVAKNTREH-----------TDFKNA 49 Query: 65 DLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVE 124 D E F + G +++ I L + + + ++L V EL P Sbjct: 50 DDELFTAVFFGAHRQQREYMQQIRPHLDRDENL--ISPVERAVLLLAVHELAAMPETPYP 107 Query: 125 VIISEYVCIAHDFFYGDEPKFINAVLDKVS---RKEEIKRS 162 V+I+E + + F D KFIN++LDK++ R + KR+ Sbjct: 108 VVINEAIELTKTFGGTDSHKFINSILDKLAAELRPNDPKRA 148 >gi|33519701|ref|NP_878533.1| transcription antitermination protein NusB [Candidatus Blochmannia floridanus] gi|39931819|sp|Q7VRI1|NUSB_BLOFL RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|33504046|emb|CAD83307.1| transcription termination; L factor [Candidatus Blochmannia floridanus] Length = 138 Score = 142 bits (358), Expect = 2e-32, Method: Composition-based stats. Identities = 37/142 (26%), Positives = 69/142 (48%), Gaps = 13/142 (9%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 R ARL A+QALY + Y ++ + ++++ + ++ +F + G Sbjct: 6 RRFARLCALQALYAWQLSKND----------YTMISNYVIKIQNI-QNFNISYFLTLYIG 54 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135 V+ + ++ L+ L+ +D I S+L + EL +C VP +V+I+E + +A Sbjct: 55 VIHTIKELNTLMIPYLSRG--LKAIDYIEYSVLLIALFELTQCCDVPYKVVINEAIELAK 112 Query: 136 DFFYGDEPKFINAVLDKVSRKE 157 F KFIN VLDK+ ++ Sbjct: 113 IFGSEKSHKFINGVLDKIITEK 134 >gi|291532856|emb|CBL05969.1| transcription antitermination factor NusB [Megamonas hypermegale ART12/1] Length = 131 Score = 142 bits (358), Expect = 2e-32, Method: Composition-based stats. Identities = 33/142 (23%), Positives = 64/142 (45%), Gaps = 15/142 (10%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 R AR A+Q+L+Q+D C I +++ D ++ R+++ G Sbjct: 3 RRQAREIALQSLFQLDFNECEVDSAIENVLSHK-----------KLHEADCDFVRILVSG 51 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHS--VPVEVIISEYVCI 133 + + ID +I+ ++ W R+ I +I+R + E+ VP + I+E V + Sbjct: 52 TRENLESIDKMIAEK-SKDWKIERMSGIDRNIVRLAIFEMKFSSDKLVP-NIAINEAVEL 109 Query: 134 AHDFFYGDEPKFINAVLDKVSR 155 A F D +F+N +L + + Sbjct: 110 AKKFGTDDSARFVNGILGSMIK 131 >gi|94968243|ref|YP_590291.1| NusB antitermination factor [Candidatus Koribacter versatilis Ellin345] gi|119372272|sp|Q1ISD3|NUSB_ACIBL RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|94550293|gb|ABF40217.1| NusB antitermination factor [Candidatus Koribacter versatilis Ellin345] Length = 146 Score = 142 bits (358), Expect = 2e-32, Method: Composition-based stats. Identities = 39/151 (25%), Positives = 65/151 (43%), Gaps = 11/151 (7%) Query: 12 LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71 + R +R A+Q L+Q+D+ S + + R + E+ + Sbjct: 4 KTGTRRKSRELALQMLFQMDMGKQSADHVEKTFWAERKDLEEEVR----------SFAID 53 Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131 + H R + ID LI E W R+ + +ILR E + P V+I+E + Sbjct: 54 LFHVAEKRSEEIDKLIEKH-AEHWRMERMAAVDRNILRGACAEFMGFPKTPKPVVINESL 112 Query: 132 CIAHDFFYGDEPKFINAVLDKVSRKEEIKRS 162 IA F + +FIN VLD V+R+ + +R Sbjct: 113 EIARRFSSPESVQFINGVLDSVARELDAERK 143 >gi|94991121|ref|YP_599221.1| transcription antitermination protein NusB [Streptococcus pyogenes MGAS10270] gi|94544629|gb|ABF34677.1| N utilization substance protein B [Streptococcus pyogenes MGAS10270] Length = 156 Score = 142 bits (358), Expect = 2e-32, Method: Composition-based stats. Identities = 35/143 (24%), Positives = 69/143 (48%), Gaps = 6/143 (4%) Query: 14 HRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVII 73 + R R A QAL+ I++ E+++ + + D ++ L + + + ++ Sbjct: 13 NSRRDLRERAFQALFNIEMG----AELLAA-SQFAYGYDKVTREDAQVLELPI-FLLSLV 66 Query: 74 HGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCI 133 GV + K+ +D LIS+ L + WS RL + ++LR G+ E+ P V ++E + + Sbjct: 67 TGVNNHKEELDNLISTHLKKGWSLERLTLTDKTLLRLGLFEIKYFDETPDRVALNEIIEV 126 Query: 134 AHDFFYGDEPKFINAVLDKVSRK 156 A + KFIN +L + + Sbjct: 127 AKKYSDETSAKFINGLLSQYVSE 149 >gi|295106070|emb|CBL03613.1| transcription antitermination factor NusB [Gordonibacter pamelaeae 7-10-1-b] Length = 160 Score = 142 bits (358), Expect = 2e-32, Method: Composition-based stats. Identities = 42/158 (26%), Positives = 73/158 (46%), Gaps = 14/158 (8%) Query: 12 LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71 H R AR +A+ LY +I T+I E D L ++ Sbjct: 4 KRHERTRARRSALALLYTSEITDEGATKIAEE--GRYLAEDGPLP----------DYATA 51 Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131 ++ GV + ID ++ +E W+ +R+ ++ SILR E++ VP V I+E V Sbjct: 52 LVRGVEAHRVAIDKHLA-ATSENWALARMPIVDRSILRLATYEMMYVDDVPTSVTINEAV 110 Query: 132 CIAHDFFYGD-EPKFINAVLDKVSRKEEIKRSGCVSAI 168 +A DF D P+F+N VL ++++ + +++ SA Sbjct: 111 ELAKDFGGEDESPRFVNGVLGRIAKILDEEKAAPKSAP 148 >gi|119390835|sp|Q1JF82|NUSB_STRPD RecName: Full=N utilization substance protein B homolog; Short=Protein nusB Length = 150 Score = 141 bits (357), Expect = 3e-32, Method: Composition-based stats. Identities = 35/143 (24%), Positives = 69/143 (48%), Gaps = 6/143 (4%) Query: 14 HRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVII 73 + R R A QAL+ I++ E+++ + + D ++ L + + + ++ Sbjct: 7 NSRRDLRERAFQALFNIEMG----AELLAA-SQFAYGYDKVTREDAQVLELPI-FLLSLV 60 Query: 74 HGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCI 133 GV + K+ +D LIS+ L + WS RL + ++LR G+ E+ P V ++E + + Sbjct: 61 TGVNNHKEELDNLISTHLKKGWSLERLTLTDKTLLRLGLFEIKYFDETPDRVALNEIIEV 120 Query: 134 AHDFFYGDEPKFINAVLDKVSRK 156 A + KFIN +L + + Sbjct: 121 AKKYSDETSAKFINGLLSQYVSE 143 >gi|302389868|ref|YP_003825689.1| NusB antitermination factor [Thermosediminibacter oceani DSM 16646] gi|302200496|gb|ADL08066.1| NusB antitermination factor [Thermosediminibacter oceani DSM 16646] Length = 154 Score = 141 bits (357), Expect = 3e-32, Method: Composition-based stats. Identities = 38/146 (26%), Positives = 64/146 (43%), Gaps = 13/146 (8%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 R +AR + L+ ID G + E + D E+ ++G Sbjct: 17 RKLAREWCFKILFAIDAGGNTIDEAMKITVNKPLNEDI------------REFMLKEVNG 64 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135 V+++K+ ID +I W RL++ +I+R + E+ +P+ V I+E V IA Sbjct: 65 VLEKKECIDEIIDEYCV-DWELERLNIADRNIMRLAIYEIFFSDDIPLSVSINEAVEIAK 123 Query: 136 DFFYGDEPKFINAVLDKVSRKEEIKR 161 + PKF+N VL ++R E R Sbjct: 124 KYGDEKSPKFVNGVLGAIARDREKLR 149 >gi|91774848|ref|YP_544604.1| NusB antitermination factor [Methylobacillus flagellatus KT] gi|119390784|sp|Q1H424|NUSB_METFK RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|91708835|gb|ABE48763.1| NusB antitermination factor [Methylobacillus flagellatus KT] Length = 154 Score = 141 bits (357), Expect = 3e-32, Method: Composition-based stats. Identities = 42/165 (25%), Positives = 71/165 (43%), Gaps = 16/165 (9%) Query: 1 MTIQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESV 60 M + K K R +R ++ +Y + T+ II E + Sbjct: 1 MPAEAKKPAPKAGRSRRKSRELVLKGIYLGLMNQKDTSVIIRELAD-----------DPD 49 Query: 61 YLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHS 120 + D E+FR ++ GV + +D ++ L + S L I +IL ELI + Sbjct: 50 FDRADYEYFRQLLEGVAESIDELDARLAGLLDRQ--VSELSPIEHAILCIAAYELIHDVT 107 Query: 121 VPVEVIISEYVCIAHDFFYGDEPKFINAVLDKV---SRKEEIKRS 162 +P V I+E V +A + D K++N VLDK+ +R +E +R Sbjct: 108 IPYRVAINEGVELAKLYGGTDGHKYVNGVLDKIAAEARPDEFQRG 152 >gi|84688074|ref|ZP_01015933.1| putative N utilization substance protein B [Maritimibacter alkaliphilus HTCC2654] gi|84663924|gb|EAQ10429.1| putative N utilization substance protein B [Rhodobacterales bacterium HTCC2654] Length = 168 Score = 141 bits (357), Expect = 3e-32, Method: Composition-based stats. Identities = 56/166 (33%), Positives = 87/166 (52%), Gaps = 11/166 (6%) Query: 2 TIQDN---KKDLKLSHRRG---IARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTEL 55 T QD K+ + +R +RL AVQAL+Q++ G + E+E +RF A Sbjct: 5 TPQDTDRPKRKMTPELKRRMKSASRLYAVQALFQMEAAGQGYDRVRKEFEDHRFGA---E 61 Query: 56 DVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLEL 115 E + +++ FR I+ +DR+ ID + L KW +R+D L ++ RA EL Sbjct: 62 YEEGEFEEGNVDLFRAILGEAVDRQAKIDQMTDRALVAKWPIARIDPTLRALFRAAGAEL 121 Query: 116 IECHSVPVEVIISEYVCIAHDFF-YGDEPKFINAVLDKVSRKEEIK 160 + P +V+I E+V +A FF G EPKF NAVLD ++R+ + Sbjct: 122 V-LGDTPPKVVIVEFVEVAKAFFPEGHEPKFTNAVLDHMAREARPE 166 >gi|88811151|ref|ZP_01126407.1| transcription antitermination protein NusB [Nitrococcus mobilis Nb-231] gi|88791690|gb|EAR22801.1| transcription antitermination protein NusB [Nitrococcus mobilis Nb-231] Length = 157 Score = 141 bits (357), Expect = 3e-32, Method: Composition-based stats. Identities = 42/144 (29%), Positives = 66/144 (45%), Gaps = 18/144 (12%) Query: 23 AVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQH 82 +QALYQ + + EI ++ E HVDLE+F +++ + R Sbjct: 21 VLQALYQWQLTAQDSAEIERQFLE-----------EHNMAHVDLEYFAELLYEIPARLAS 69 Query: 83 IDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDE 142 +D LI L + +D + +ILR G EL + +P V+++E V +A F Sbjct: 70 LDALIEPALDR--PLAVIDPVEKAILRMGTYELTQRLDIPYRVVVNEAVDLARLFGAEQS 127 Query: 143 PKFINAVLDKVS-----RKEEIKR 161 ++IN VLD+V R EI R Sbjct: 128 HRYINGVLDRVGHHTPLRAAEIGR 151 >gi|329119641|ref|ZP_08248322.1| transcription antitermination factor NusB [Neisseria bacilliformis ATCC BAA-1200] gi|327464238|gb|EGF10542.1| transcription antitermination factor NusB [Neisseria bacilliformis ATCC BAA-1200] Length = 142 Score = 141 bits (357), Expect = 3e-32, Method: Composition-based stats. Identities = 42/155 (27%), Positives = 63/155 (40%), Gaps = 17/155 (10%) Query: 10 LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF 69 +K S RR AR AVQALYQ + G S ++ + S Y D E F Sbjct: 1 MKTSPRRR-AREFAVQALYQCALNGASAVQVA-----------QNIREASDYPRADGELF 48 Query: 70 RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISE 129 + G D I L ++ + +IL EL P VII+E Sbjct: 49 TALFFGAHDNGGEYMQRIRPLLDRDEK--DINPVERAILLMACHELAAMPETPYPVIINE 106 Query: 130 YVCIAHDFFYGDEPKFINAVLDKVS---RKEEIKR 161 + + + D KF+N +LD+++ R ++ KR Sbjct: 107 AIEVTKTYGGTDSHKFVNGILDRLAAELRPDDPKR 141 >gi|332530152|ref|ZP_08406101.1| NusB antitermination factor [Hylemonella gracilis ATCC 19624] gi|332040422|gb|EGI76799.1| NusB antitermination factor [Hylemonella gracilis ATCC 19624] Length = 187 Score = 141 bits (357), Expect = 3e-32, Method: Composition-based stats. Identities = 41/168 (24%), Positives = 70/168 (41%), Gaps = 16/168 (9%) Query: 6 NKKDLKLSHR---RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYL 62 K K S R +R A+QALYQ + +T +I D + + Sbjct: 31 GKAANKPSRALSGRSRSREFALQALYQHLVGRNATADI-----------DAFTRDLTGFH 79 Query: 63 HVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVP 122 D + ++HG ++ + +D LI L K + + I +I+ G E C VP Sbjct: 80 KADAAHYDALLHGCVNEAEALDRLILPLLDRK--LAEISPIERAIMWMGAYEFQHCVDVP 137 Query: 123 VEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRSGCVSAITQ 170 V+++EY+ +A F D K++NAVL+ ++ A + Sbjct: 138 WRVVLNEYIELAKSFGGTDGHKYVNAVLNGLAPTLRAAEVAADKASGK 185 >gi|189424280|ref|YP_001951457.1| NusB antitermination factor [Geobacter lovleyi SZ] gi|238692133|sp|B3E757|NUSB_GEOLS RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|189420539|gb|ACD94937.1| NusB antitermination factor [Geobacter lovleyi SZ] Length = 142 Score = 141 bits (356), Expect = 3e-32, Method: Composition-based stats. Identities = 34/138 (24%), Positives = 65/138 (47%), Gaps = 12/138 (8%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 R AR A+Q LY D + S + + + + E+ ++ G Sbjct: 4 RREARELALQMLYAQDTLQGSLRDTLRGFREGVETGERT-----------REFAEALVQG 52 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135 VM+ ++ ID I + ++ W+ SR+ + +I+R EL+ +P +V I+E + IA Sbjct: 53 VMEHREAIDQAIVAR-SKNWALSRMPRVDLNIMRMAAYELMFKRDIPKKVSINEAIEIAK 111 Query: 136 DFFYGDEPKFINAVLDKV 153 + + P F+N +LD++ Sbjct: 112 KYGDKESPAFVNGILDEL 129 >gi|297616617|ref|YP_003701776.1| NusB antitermination factor [Syntrophothermus lipocalidus DSM 12680] gi|297144454|gb|ADI01211.1| NusB antitermination factor [Syntrophothermus lipocalidus DSM 12680] Length = 138 Score = 141 bits (356), Expect = 3e-32, Method: Composition-based stats. Identities = 36/142 (25%), Positives = 69/142 (48%), Gaps = 13/142 (9%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 R +AR A + L+Q+D+ G S + + L E+ L + R ++ Sbjct: 3 RSLARETAFKVLFQVDLAGASPRDAL-----------QHLTAETPLADRYLAFARELVDK 51 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135 ++ + ID IS + +WS SR+ + +I+R V E++ + V+I+E V +A Sbjct: 52 TLEHVKTIDSYISKY-SPEWSISRMATVDRNIMRMAVCEMLYT-EIDPVVVINEAVELAK 109 Query: 136 DFFYGDEPKFINAVLDKVSRKE 157 + + FINA+LD++ ++ Sbjct: 110 KYGDENSSSFINAILDRIMGEK 131 >gi|296129685|ref|YP_003636935.1| NusB antitermination factor [Cellulomonas flavigena DSM 20109] gi|296021500|gb|ADG74736.1| NusB antitermination factor [Cellulomonas flavigena DSM 20109] Length = 138 Score = 141 bits (356), Expect = 3e-32, Method: Composition-based stats. Identities = 30/139 (21%), Positives = 65/139 (46%), Gaps = 12/139 (8%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 R AR A+ L++ + G E++++ VE ++ ++ G Sbjct: 4 RTKARKRALDVLFEAEQRGLDVAELLAKRV-----------VEPGTEASLPQYAVELVEG 52 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135 V++ + ID L+++ + W+ +R+ + ++LR G E++ VP V + E V +A Sbjct: 53 VLEHAERIDELLATH-SHGWTVARMPAVDRALLRLGAWEILWNDDVPDAVAVDEAVSLAR 111 Query: 136 DFFYGDEPKFINAVLDKVS 154 + + P F+N +L ++ Sbjct: 112 ELSTDESPAFVNGLLGRLV 130 >gi|94995000|ref|YP_603098.1| transcription antitermination protein NusB [Streptococcus pyogenes MGAS10750] gi|94548508|gb|ABF38554.1| N utilization substance protein B [Streptococcus pyogenes MGAS10750] Length = 156 Score = 141 bits (356), Expect = 3e-32, Method: Composition-based stats. Identities = 35/143 (24%), Positives = 69/143 (48%), Gaps = 6/143 (4%) Query: 14 HRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVII 73 + R R A QAL+ I++ E+++ + + D ++ L + + + ++ Sbjct: 13 NSRRDLRERAFQALFNIEMG----AELLAA-SQFAYGYDKVTGEDAQVLELPI-FLLSLV 66 Query: 74 HGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCI 133 GV + K+ +D LIS+ L + WS RL + ++LR G+ E+ P V ++E + + Sbjct: 67 MGVNNHKEELDNLISTHLKKGWSLERLTLTDKTLLRLGLFEIKYFDETPDRVALNEIIEV 126 Query: 134 AHDFFYGDEPKFINAVLDKVSRK 156 A + KFIN +L + + Sbjct: 127 AKKYSDETSAKFINGLLSQYVSE 149 >gi|78188395|ref|YP_378733.1| NusB antitermination factor [Chlorobium chlorochromatii CaD3] gi|119390755|sp|Q3ATI5|NUSB_CHLCH RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|78170594|gb|ABB27690.1| NusB antitermination factor [Chlorobium chlorochromatii CaD3] Length = 169 Score = 141 bits (356), Expect = 3e-32, Method: Composition-based stats. Identities = 40/153 (26%), Positives = 70/153 (45%), Gaps = 14/153 (9%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 R R +QALY +++ G + E T AD +++F +++ Sbjct: 5 RRQIREKILQALYTVELRGITLDEAAGWLLTEEILADPNA----------MKFFNLLLSS 54 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135 + ++ ID I+ T W SR+ +I +I+R + E++ C +P +V I+E + IA Sbjct: 55 IKAHREEIDNYIAQQ-TFNWDMSRIAIIDKNIIRMALTEILYCEDIPPKVSINEAIEIAK 113 Query: 136 DF-FYGDEPKFINAVLDKVSRKEEIKRSGCVSA 167 F KF+N +LD + K +K G V Sbjct: 114 KFNSTDKSSKFVNGILDAIFNK--LKTEGKVHK 144 >gi|227510480|ref|ZP_03940529.1| transcription antitermination protein NusB [Lactobacillus brevis subsp. gravesensis ATCC 27305] gi|227513489|ref|ZP_03943538.1| transcription antitermination protein NusB [Lactobacillus buchneri ATCC 11577] gi|227524631|ref|ZP_03954680.1| transcription antitermination protein NusB [Lactobacillus hilgardii ATCC 8290] gi|227083362|gb|EEI18674.1| transcription antitermination protein NusB [Lactobacillus buchneri ATCC 11577] gi|227088115|gb|EEI23427.1| transcription antitermination protein NusB [Lactobacillus hilgardii ATCC 8290] gi|227190132|gb|EEI70199.1| transcription antitermination protein NusB [Lactobacillus brevis subsp. gravesensis ATCC 27305] Length = 137 Score = 141 bits (356), Expect = 3e-32, Method: Composition-based stats. Identities = 32/141 (22%), Positives = 57/141 (40%), Gaps = 11/141 (7%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 R R A Q L+ ++ + E E T + Y ++ + G Sbjct: 5 RHQIREIAFQTLFALNANKQTNKENFFEVLT-----------DGKYGDEYPKYLDELTTG 53 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135 V+D K+ +D LI L WS +R+ IL + E++ +P +V I+E + +A Sbjct: 54 VVDHKEELDNLIEKYLKSGWSINRIAKTDLIILEIALYEMLHVDDLPAKVSINEAIELAK 113 Query: 136 DFFYGDEPKFINAVLDKVSRK 156 + KF+N +L + Sbjct: 114 KYSDDRSRKFVNGILSHALEE 134 >gi|303327268|ref|ZP_07357710.1| transcription antitermination factor NusB [Desulfovibrio sp. 3_1_syn3] gi|302863256|gb|EFL86188.1| transcription antitermination factor NusB [Desulfovibrio sp. 3_1_syn3] Length = 163 Score = 141 bits (356), Expect = 3e-32, Method: Composition-based stats. Identities = 31/146 (21%), Positives = 55/146 (37%), Gaps = 3/146 (2%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 R AR A Q LY + + + + E + ++ G Sbjct: 9 RRGARELAFQVLYGLSFTPAESRADLR--RAFVLSPHNTAMDEQDLGSEPTGFAWELVEG 66 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135 V +D IS + W R+ I ++LR V E++ VP +V I+E + ++ Sbjct: 67 VWGNSAALDTAISRF-SHNWRVDRMGRIELTLLRLAVFEMLYRQDVPPKVAINEALELSG 125 Query: 136 DFFYGDEPKFINAVLDKVSRKEEIKR 161 F + F+N +LD ++ E Sbjct: 126 QFGEDNAKNFVNGILDAAAKALESGE 151 >gi|262280550|ref|ZP_06058334.1| transcription termination L factor [Acinetobacter calcoaceticus RUH2202] gi|262258328|gb|EEY77062.1| transcription termination L factor [Acinetobacter calcoaceticus RUH2202] Length = 149 Score = 141 bits (356), Expect = 3e-32, Method: Composition-based stats. Identities = 37/139 (26%), Positives = 63/139 (45%), Gaps = 13/139 (9%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 + AR AVQ +Y+ + EI + E+ VDL ++ ++ Sbjct: 12 KRKARRFAVQGIYEWQMSHNPVHEIEA-----------RTRAENAMHKVDLNYYHELLTQ 60 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135 V+ ++ +D L+ L + LD + + LR G EL + VP V++ E + +A Sbjct: 61 VIAQRDDLDALLIPVLDRE--LDALDGVELATLRLGAYELRDHLEVPYRVVLDEAIELAK 118 Query: 136 DFFYGDEPKFINAVLDKVS 154 F D K+IN VLD++S Sbjct: 119 HFGGADSHKYINGVLDRLS 137 >gi|83593156|ref|YP_426908.1| NusB antitermination factor [Rhodospirillum rubrum ATCC 11170] gi|119390811|sp|Q2RTC4|NUSB_RHORT RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|83576070|gb|ABC22621.1| NusB antitermination factor [Rhodospirillum rubrum ATCC 11170] Length = 185 Score = 141 bits (356), Expect = 3e-32, Method: Composition-based stats. Identities = 58/182 (31%), Positives = 89/182 (48%), Gaps = 19/182 (10%) Query: 1 MTIQDNKKDLKLSHR-----RG-IARLAAVQALYQIDII-GCSTTEIISEYETYRFC--- 50 M +QD+K R R ARLAAVQALY +D+ +++ ++ + Sbjct: 1 MALQDDKPGSAPKERSGRQIRSSAARLAAVQALYVLDLAEDARVDQVVLDFMSGSMGGMA 60 Query: 51 ----ADTEL-----DVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLD 101 AD E + + D E F +++ G +D +I + L+ W + RL+ Sbjct: 61 IVEVADPEGIFDPTEEIAALEPPDGELFAMLVRGAHAELARLDEVIGASLSADWPWDRLE 120 Query: 102 MILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKR 161 ++ ++LRAGV EL+E P V I EYV IA F+ G EP +NAVLD+V+R + Sbjct: 121 PVVRAVLRAGVYELLERQRTPPRVAIKEYVDIAAAFYSGAEPGMVNAVLDRVARSARPEA 180 Query: 162 SG 163 G Sbjct: 181 FG 182 >gi|21674526|ref|NP_662591.1| N utilization substance protein B [Chlorobium tepidum TLS] gi|28201843|sp|Q8KBS4|NUSB_CHLTE RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|21647719|gb|AAM72933.1| N utilization substance protein B [Chlorobium tepidum TLS] Length = 164 Score = 141 bits (356), Expect = 3e-32, Method: Composition-based stats. Identities = 37/153 (24%), Positives = 68/153 (44%), Gaps = 14/153 (9%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 R R +QALY +++ T + T D +++F ++ Sbjct: 5 RRQLREKIIQALYTLELRDVDTDSAANWLLTKEIMDDPNA----------MKFFNHLMQS 54 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135 ++ ++ ID I+ T W SR+ +I +ILR + E++ C +P +V I+E + IA Sbjct: 55 IVRNREEIDRYIAKH-TFNWDMSRIAIIDKNILRMALAEILYCEDIPPKVSINEAIEIAK 113 Query: 136 DF-FYGDEPKFINAVLDKVSRKEEIKRSGCVSA 167 F KF+N +LD + ++K G + Sbjct: 114 KFSSTDKSSKFVNGILDAIF--NDMKAEGRIKK 144 >gi|195977499|ref|YP_002122743.1| transcription antitermination protein NusB [Streptococcus equi subsp. zooepidemicus MGCS10565] gi|195974204|gb|ACG61730.1| N utilization substance protein B-like NusB [Streptococcus equi subsp. zooepidemicus MGCS10565] Length = 139 Score = 141 bits (356), Expect = 3e-32, Method: Composition-based stats. Identities = 37/141 (26%), Positives = 64/141 (45%), Gaps = 8/141 (5%) Query: 20 RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLE-WFRVIIHGVMD 78 R A QAL+ +++ G +F D + +V +L + +++GVMD Sbjct: 2 RERAFQALFTMEMGGDFL-------LASQFAYDYDKEVADDKQPSELPVFLLNLVNGVMD 54 Query: 79 RKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFF 138 K +D +I L WS RL ++ ++LR G+ E+ P V ++E + IA + Sbjct: 55 HKAELDEVIKKNLKAGWSIERLTVVDKTMLRLGLFEMTLFEETPDRVALNEIIEIAKKYS 114 Query: 139 YGDEPKFINAVLDKVSRKEEI 159 KFIN +L + E + Sbjct: 115 DDTSAKFINGLLSQFVSDESV 135 >gi|326382154|ref|ZP_08203846.1| transcription antitermination protein NusB [Gordonia neofelifaecis NRRL B-59395] gi|326198884|gb|EGD56066.1| transcription antitermination protein NusB [Gordonia neofelifaecis NRRL B-59395] Length = 149 Score = 141 bits (356), Expect = 3e-32, Method: Composition-based stats. Identities = 40/145 (27%), Positives = 67/145 (46%), Gaps = 9/145 (6%) Query: 10 LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF 69 +K R AR AV L++ + T++I+E D+ + ++ Sbjct: 1 MKKPGTRHKARKRAVDLLFEAEAKNVKATQLIAERREIYPSDDSVGTM--------YDYT 52 Query: 70 RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISE 129 ++ GV +D +I S L E W RL + +ILR V EL+ + V ++V++ E Sbjct: 53 VRVVEGVTVDASQVDAVIESHL-ENWKLHRLPAVDRAILRLAVWELLYANDVDIDVVLDE 111 Query: 130 YVCIAHDFFYGDEPKFINAVLDKVS 154 V +A + D P F+N VL KV+ Sbjct: 112 AVELAKELSTDDSPSFVNGVLGKVA 136 >gi|149177355|ref|ZP_01855960.1| transcription antitermination protein NusB [Planctomyces maris DSM 8797] gi|148843880|gb|EDL58238.1| transcription antitermination protein NusB [Planctomyces maris DSM 8797] Length = 171 Score = 141 bits (356), Expect = 3e-32, Method: Composition-based stats. Identities = 44/144 (30%), Positives = 66/144 (45%), Gaps = 15/144 (10%) Query: 16 RGIARLAAVQALYQIDII-GCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74 R AR VQ LYQID+ S EI E+ E + + Sbjct: 4 RKQARFLVVQMLYQIDLNPDISINEI------------REMIEEHGRNKTARTFAWELFT 51 Query: 75 GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134 GVM+ KQ +D I + E W+ R+ + +ILR G EL+ P V+I E V +A Sbjct: 52 GVMEFKQQLDEHIVR-VAENWTLKRMAVTDRNILRLGTYELLHT-DTPPAVVIDEAVELA 109 Query: 135 HDFFYGDEPKFINAVLDKVSRKEE 158 +F +F+N +LDKV ++++ Sbjct: 110 REFGSAHSSQFVNGILDKVVQRKD 133 >gi|57233932|ref|YP_181990.1| N utilization substance protein B [Dehalococcoides ethenogenes 195] gi|119390764|sp|Q3Z709|NUSB_DEHE1 RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|57224380|gb|AAW39437.1| N utilization substance protein B [Dehalococcoides ethenogenes 195] Length = 143 Score = 141 bits (356), Expect = 3e-32, Method: Composition-based stats. Identities = 37/144 (25%), Positives = 67/144 (46%), Gaps = 12/144 (8%) Query: 12 LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71 ++ R AR +QALY+ D+ G + +++ T E+ + E+ Sbjct: 1 MTTSRRKAREIVLQALYEQDLAGHNAEDVLKRLLT-----------ETPQTEENAEFIFR 49 Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131 + + ++ K +D I + W +L I ++LR + E+I + VP++V I+E V Sbjct: 50 LTNAIVKHKDLLDENIRQFASA-WPVEQLSYIDRNVLRLAIFEIIHENDVPIKVAINEAV 108 Query: 132 CIAHDFFYGDEPKFINAVLDKVSR 155 +A F +FIN VL VS+ Sbjct: 109 ELAKSFGGNSSARFINGVLSSVSK 132 >gi|119390836|sp|Q1J532|NUSB_STRPF RecName: Full=N utilization substance protein B homolog; Short=Protein nusB Length = 150 Score = 141 bits (356), Expect = 4e-32, Method: Composition-based stats. Identities = 35/143 (24%), Positives = 69/143 (48%), Gaps = 6/143 (4%) Query: 14 HRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVII 73 + R R A QAL+ I++ E+++ + + D ++ L + + + ++ Sbjct: 7 NSRRDLRERAFQALFNIEMG----AELLAA-SQFAYGYDKVTGEDAQVLELPI-FLLSLV 60 Query: 74 HGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCI 133 GV + K+ +D LIS+ L + WS RL + ++LR G+ E+ P V ++E + + Sbjct: 61 MGVNNHKEELDNLISTHLKKGWSLERLTLTDKTLLRLGLFEIKYFDETPDRVALNEIIEV 120 Query: 134 AHDFFYGDEPKFINAVLDKVSRK 156 A + KFIN +L + + Sbjct: 121 AKKYSDETSAKFINGLLSQYVSE 143 >gi|189219673|ref|YP_001940314.1| transcription termination protein NusB [Methylacidiphilum infernorum V4] gi|259514863|sp|B3DWQ3|NUSB_METI4 RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|189186531|gb|ACD83716.1| Transcription termination protein NusB [Methylacidiphilum infernorum V4] Length = 143 Score = 141 bits (355), Expect = 4e-32, Method: Composition-based stats. Identities = 34/142 (23%), Positives = 61/142 (42%), Gaps = 13/142 (9%) Query: 16 RGIARLAAVQALYQIDII-GCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74 R R VQ LYQ ++ G ++ ++ + + + +L Sbjct: 4 RRKIRELIVQFLYQWEMNKGVGLDNMLLDFWDFSPLDQKDKEAVEQWLKE---------- 53 Query: 75 GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134 + + K+ I+ I+S + WS RL + IL G+ E++ +P V I+E V IA Sbjct: 54 -IAEHKEAIEEKINSY-VKNWSLDRLAPVDKCILILGIYEILYRKDIPPAVSINESVEIA 111 Query: 135 HDFFYGDEPKFINAVLDKVSRK 156 + + KF+N +LD V + Sbjct: 112 KKYSTEESGKFVNGILDSVLKD 133 >gi|194290431|ref|YP_002006338.1| transcription antitermination protein nusb [Cupriavidus taiwanensis LMG 19424] gi|193224266|emb|CAQ70275.1| antitermination factor (N UTILIZATION SUBSTANCE B) (TRANSCRIPTIONAL ANTITERMINATOR) [Cupriavidus taiwanensis LMG 19424] Length = 172 Score = 141 bits (355), Expect = 4e-32, Method: Composition-based stats. Identities = 35/151 (23%), Positives = 60/151 (39%), Gaps = 15/151 (9%) Query: 4 QDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLH 63 + K K + RR R A+Q LYQ + I + + Sbjct: 25 TEAKAPPKSARRRS--RELALQGLYQWLLNRNDIGAIQAHLHD-----------AQGFNK 71 Query: 64 VDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPV 123 D E F +++G + + + L S L + + L G EL+ C +P Sbjct: 72 ADREHFDALLNGAVREEARLTAAFEPFLDR--SVDELSPVERAALLVGSYELVHCLDIPY 129 Query: 124 EVIISEYVCIAHDFFYGDEPKFINAVLDKVS 154 +V+I+E V + F + K++N VLDK++ Sbjct: 130 KVVINEAVELTKTFGGVEGYKYVNGVLDKLA 160 >gi|114319541|ref|YP_741224.1| NusB antitermination factor [Alkalilimnicola ehrlichii MLHE-1] gi|119372274|sp|Q0ABQ3|NUSB_ALHEH RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|114225935|gb|ABI55734.1| NusB antitermination factor [Alkalilimnicola ehrlichii MLHE-1] Length = 178 Score = 141 bits (355), Expect = 4e-32, Method: Composition-based stats. Identities = 38/141 (26%), Positives = 61/141 (43%), Gaps = 8/141 (5%) Query: 28 YQIDIIGCSTTEIISEYETYR------FCADTELDVESVYLHVDLEWFRVIIHGVMDRKQ 81 YQ + G I +++ D E + +D +FR ++HGV R Sbjct: 29 YQWQMTGQDLGAIEAQHLEIDPEEPPVEAGDDEHYPRYPHDGLDRPYFRALLHGVPARLN 88 Query: 82 HIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGD 141 +D + L LD + ++LR G EL E P VII+E V +A F Sbjct: 89 DLDQALEPLLDR--PLRTLDPLEKALLRLGAWELSERMDTPWRVIINEAVNLAKRFGAEQ 146 Query: 142 EPKFINAVLDKVSRKEEIKRS 162 ++IN VLDK++R ++ + Sbjct: 147 SHRYINGVLDKLARGLPLRAT 167 >gi|121611696|ref|YP_999503.1| NusB antitermination factor [Verminephrobacter eiseniae EF01-2] gi|121556336|gb|ABM60485.1| NusB antitermination factor [Verminephrobacter eiseniae EF01-2] Length = 176 Score = 141 bits (355), Expect = 4e-32, Method: Composition-based stats. Identities = 37/154 (24%), Positives = 64/154 (41%), Gaps = 13/154 (8%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 R AR A+QALYQ + G +I D + + D ++ ++HG Sbjct: 34 RSRAREFALQALYQHLVGGNDAADI-----------DEFTRGLAGFHKADAAHYQTLLHG 82 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135 + ID LI L + + I + + GV E C VP V+++E + +A Sbjct: 83 CIGAAADIDALIVPLLDRQ--LIAISPIERATMWIGVYEFQHCPDVPWRVVLNECIELAK 140 Query: 136 DFFYGDEPKFINAVLDKVSRKEEIKRSGCVSAIT 169 +F D K++NA+L+ ++ + A Sbjct: 141 EFGGTDGHKYVNAMLNALAPRLRAAEVAADRARA 174 >gi|221065986|ref|ZP_03542091.1| NusB antitermination factor [Comamonas testosteroni KF-1] gi|220711009|gb|EED66377.1| NusB antitermination factor [Comamonas testosteroni KF-1] Length = 178 Score = 141 bits (355), Expect = 4e-32, Method: Composition-based stats. Identities = 38/159 (23%), Positives = 71/159 (44%), Gaps = 14/159 (8%) Query: 1 MTIQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESV 60 +T +K S+ R AR A+Q LYQ + + +I RF D + Sbjct: 21 LTSTGARKAGSKSN-RSRAREFALQGLYQHIVGRNAVLDI------DRFTRDL-----AG 68 Query: 61 YLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHS 120 + D+ + ++ G ++ + +D LI+ L + + I + + GV E C Sbjct: 69 FHKADVVHYDALLRGCVENEVSLDALITPKLDRG--LTEISPIEHACMWIGVYEFQNCPD 126 Query: 121 VPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEI 159 VP V+++E + +A +F D K++NAVL+ ++ Sbjct: 127 VPWRVVLNECIELAKEFGGTDGHKYVNAVLNGLAPDLRA 165 >gi|119384293|ref|YP_915349.1| NusB antitermination factor [Paracoccus denitrificans PD1222] gi|119374060|gb|ABL69653.1| NusB antitermination factor [Paracoccus denitrificans PD1222] Length = 166 Score = 141 bits (355), Expect = 4e-32, Method: Composition-based stats. Identities = 48/141 (34%), Positives = 73/141 (51%), Gaps = 3/141 (2%) Query: 21 LAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRK 80 L AVQAL+Q++ G S + E+ +R + E D + V D F I+ + + Sbjct: 26 LYAVQALFQMEAAGQSADRVQREFLNWRIGREDE-DDDIVSAEADQALFTRIVDDAVTWQ 84 Query: 81 QHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYG 140 ID + L KW R+D +L S+ RA EL+ P +V+I+EYV +A FF Sbjct: 85 SKIDQMTDRALVAKWPIDRIDPVLRSVFRAAGAELV-TPKTPPKVVITEYVRLAQTFFAE 143 Query: 141 -DEPKFINAVLDKVSRKEEIK 160 E KF+NAVLD ++R+ + Sbjct: 144 GRESKFVNAVLDHMAREARPE 164 >gi|255524173|ref|ZP_05391133.1| NusB antitermination factor [Clostridium carboxidivorans P7] gi|296186630|ref|ZP_06855032.1| transcription antitermination factor NusB [Clostridium carboxidivorans P7] gi|255512158|gb|EET88438.1| NusB antitermination factor [Clostridium carboxidivorans P7] gi|296048667|gb|EFG88099.1| transcription antitermination factor NusB [Clostridium carboxidivorans P7] Length = 155 Score = 141 bits (355), Expect = 4e-32, Method: Composition-based stats. Identities = 36/155 (23%), Positives = 70/155 (45%), Gaps = 13/155 (8%) Query: 15 RRGIARLAAVQALYQIDIIGCSTTEIIS-----------EYETYRFCADTELDVESVYLH 63 R +R ++ L+Q+ I ++++ E + E+D E++ L Sbjct: 2 NRRKSRELVMKLLFQMTINKEDFKDVVANLKENIELDKSELQITGIEGKNEIDPENIDLK 61 Query: 64 -VDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVP 122 +D+E+ ++ GV + K+ ID I L W +RL + +ILR E + ++P Sbjct: 62 DIDMEYVIRVLKGVQENKESIDSAIEKHLI-NWKLNRLSKLDVAILRVCTYEFLYEDNIP 120 Query: 123 VEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKE 157 V I+E + +A + FIN VL + +++ Sbjct: 121 KNVSINEAIELAKRYSGDKSAAFINGVLGSMIKEK 155 >gi|261365604|ref|ZP_05978487.1| transcription antitermination factor NusB [Neisseria mucosa ATCC 25996] gi|288565933|gb|EFC87493.1| transcription antitermination factor NusB [Neisseria mucosa ATCC 25996] Length = 143 Score = 141 bits (355), Expect = 4e-32, Method: Composition-based stats. Identities = 42/156 (26%), Positives = 58/156 (37%), Gaps = 18/156 (11%) Query: 10 LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF 69 +K RR AR AVQALYQ I + EI + + + D E F Sbjct: 1 MKTPRRR--ARELAVQALYQAGINNTAAPEIA-----------KNIQDQPDFAKADEELF 47 Query: 70 RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISE 129 + G I L L I ++L EL P VII+E Sbjct: 48 NKLFFGTHTHAAEYIQQIRPLLDRDEK--DLSPIERAVLLMACHELSAMPETPYPVIINE 105 Query: 130 YVCIAHDFFYGDEPKFINAVLDKVS---RKEEIKRS 162 + + F D KF+N +LDK++ R + KR Sbjct: 106 AIEVTKTFGGTDGHKFVNGILDKLAAQLRPNDPKRG 141 >gi|255066867|ref|ZP_05318722.1| transcription antitermination factor NusB [Neisseria sicca ATCC 29256] gi|255048942|gb|EET44406.1| transcription antitermination factor NusB [Neisseria sicca ATCC 29256] Length = 143 Score = 141 bits (355), Expect = 5e-32, Method: Composition-based stats. Identities = 42/158 (26%), Positives = 58/158 (36%), Gaps = 18/158 (11%) Query: 10 LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF 69 +K RR AR AVQALYQ I + EI + + + D E F Sbjct: 1 MKTPRRR--ARELAVQALYQAGINNTAAPEIA-----------KNIQDQPDFAKADEELF 47 Query: 70 RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISE 129 + G I L L I ++L EL P VII+E Sbjct: 48 NKLFFGTHTHAAEYIQQIRPLLDRDEK--DLSPIERAVLLMACHELSAMPETPYPVIINE 105 Query: 130 YVCIAHDFFYGDEPKFINAVLDKVS---RKEEIKRSGC 164 + + F D KF+N +LDK++ R + KR Sbjct: 106 AIEVTKTFGGTDGHKFVNGILDKLAAQLRPNDPKRGNA 143 >gi|320352895|ref|YP_004194234.1| NusB antitermination factor [Desulfobulbus propionicus DSM 2032] gi|320121397|gb|ADW16943.1| NusB antitermination factor [Desulfobulbus propionicus DSM 2032] Length = 140 Score = 141 bits (355), Expect = 5e-32, Method: Composition-based stats. Identities = 35/140 (25%), Positives = 65/140 (46%), Gaps = 11/140 (7%) Query: 16 RGIARLAAVQALYQIDI--IGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVII 73 R +R A+Q L+ D C+ ++ + + + D L + R +I Sbjct: 4 RRKSRELALQFLFSHDFQERSCAPDDVARDLDMFCQLFDVSQKA--------LPYGRELI 55 Query: 74 HGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCI 133 G+ ++ ID L+++ + W R+ ++ +ILR V E+ C P +V I+E + I Sbjct: 56 LGICRHREEIDALLATH-SHNWRVERMSLVDRNILRIAVFEMRHCDQAPAQVAINEALEI 114 Query: 134 AHDFFYGDEPKFINAVLDKV 153 A + G+ FIN +LD + Sbjct: 115 AKRYSIGESVSFINGILDAI 134 >gi|258515792|ref|YP_003192014.1| NusB antitermination factor [Desulfotomaculum acetoxidans DSM 771] gi|257779497|gb|ACV63391.1| NusB antitermination factor [Desulfotomaculum acetoxidans DSM 771] Length = 156 Score = 141 bits (355), Expect = 5e-32, Method: Composition-based stats. Identities = 34/155 (21%), Positives = 68/155 (43%), Gaps = 13/155 (8%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 R R A+Q L+QI++ G E +S +E+ R ++ G Sbjct: 3 RREGRQIAMQILFQIEVGGIDPEEAFKNTVA-----------DSTCPVPIMEFARQLVFG 51 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135 + + ID +IS +++ W R+ + +++R + E+ ++P+ V +E + +A Sbjct: 52 TLGHLKEIDRVISE-ISKGWRLDRIANVDKTLIRMALYEIFYEDNIPLNVSANEAIELAK 110 Query: 136 DFFYGDEPKFINAVLDKVSRK-EEIKRSGCVSAIT 169 F + KF+N ++ KV +K +E G Sbjct: 111 IFGGEESGKFVNGIIGKVVQKPDEYLTGGAEEKPA 145 >gi|328955583|ref|YP_004372916.1| NusB antitermination factor [Coriobacterium glomerans PW2] gi|328455907|gb|AEB07101.1| NusB antitermination factor [Coriobacterium glomerans PW2] Length = 198 Score = 141 bits (355), Expect = 5e-32, Method: Composition-based stats. Identities = 36/153 (23%), Positives = 69/153 (45%), Gaps = 15/153 (9%) Query: 9 DLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEW 68 +K++ R +AR A+Q L+Q + + CS E++ D L + + Sbjct: 2 SIKVNRGRTLARSQALQLLFQAEALMCSLDEVLE--------GDYLLSQGPL-----EPY 48 Query: 69 FRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLEL-IECHSVPVEVII 127 ++ G ID + +++ W SR+ ++LR + E+ + + V+I Sbjct: 49 ALELVRGCYAHLDRIDSALC-AVSQNWELSRMPGSDRNLLRLAIYEMRLADEPIEDAVVI 107 Query: 128 SEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIK 160 +E V IA + + F+N VL ++SR EE+ Sbjct: 108 NEAVEIAKAYGTDESAGFVNGVLGEISRAEELP 140 >gi|237749244|ref|ZP_04579724.1| N utilization substance protein B [Oxalobacter formigenes OXCC13] gi|229380606|gb|EEO30697.1| N utilization substance protein B [Oxalobacter formigenes OXCC13] Length = 156 Score = 141 bits (355), Expect = 5e-32, Method: Composition-based stats. Identities = 34/155 (21%), Positives = 58/155 (37%), Gaps = 13/155 (8%) Query: 2 TIQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVY 61 T + K R +R A+Q LY+ + II + + Sbjct: 3 TTSVHANPSKNRSPRHRSREFALQGLYEWLLNRDDAPVIIE-----------HIRQAHGF 51 Query: 62 LHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSV 121 D F ++ G + + + ++ + L + +IL G EL + Sbjct: 52 DKADTGHFVTLLSGSIHQADKLREELAPHIDR--PLEELSPVEHAILLLGAFELSNHIEI 109 Query: 122 PVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRK 156 P V+I+E V + F D KF+N VLDK++ K Sbjct: 110 PYRVVINEAVELTKSFGGIDGHKFVNGVLDKLAAK 144 >gi|302335896|ref|YP_003801103.1| NusB antitermination factor [Olsenella uli DSM 7084] gi|301319736|gb|ADK68223.1| NusB antitermination factor [Olsenella uli DSM 7084] Length = 165 Score = 141 bits (355), Expect = 5e-32, Method: Composition-based stats. Identities = 39/155 (25%), Positives = 71/155 (45%), Gaps = 14/155 (9%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 R +AR A+Q L+Q + G S E++ E D +D + + G Sbjct: 10 RTLARSQALQLLFQAEATGRSVFEVL------------EGDYALTQGPLD-PFGESLARG 56 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135 V D + +D +I+ + WS SR+ + ++LR + E++E V + I E V +A Sbjct: 57 VDDMRTDLDAIIA-VTSSNWSISRMPSVDRNLLRLALYEMLEVDEVATPIAIDECVELAK 115 Query: 136 DFFYGDEPKFINAVLDKVSRKEEIKRSGCVSAITQ 170 + + +F+N +L +V+ + E+ SA Q Sbjct: 116 AYGTAESSRFVNGLLGRVAARLELGEDVISSARAQ 150 >gi|134094270|ref|YP_001099345.1| transcription termination, L factor (N utilization substance protein B) [Herminiimonas arsenicoxydans] gi|133738173|emb|CAL61218.1| N utilization substance protein B homolog (Protein NusB) [Herminiimonas arsenicoxydans] Length = 156 Score = 141 bits (355), Expect = 5e-32, Method: Composition-based stats. Identities = 39/163 (23%), Positives = 67/163 (41%), Gaps = 17/163 (10%) Query: 1 MTIQ-DNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVES 59 MT + D+ K R AR A+Q LYQ + I + + Sbjct: 1 MTQKTDHANPSKNRTPRHRAREFALQGLYQWLLNNEDVRTI-----------ENHIRQAH 49 Query: 60 VYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECH 119 + D E F +++G + + + ++ + + S L + + L G EL Sbjct: 50 GFDKADAEHFDALLYGTVKQVGELRAGLAPLIDRE--ISALSPVEHAALLIGAFELKNHI 107 Query: 120 SVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVS---RKEEI 159 +P +V+I+E V + F D K++N VLDK + R+ EI Sbjct: 108 EIPYKVVINEAVELTKSFGGIDGHKYVNGVLDKFAAGVREPEI 150 >gi|331701511|ref|YP_004398470.1| NusB antitermination factor [Lactobacillus buchneri NRRL B-30929] gi|329128854|gb|AEB73407.1| NusB antitermination factor [Lactobacillus buchneri NRRL B-30929] Length = 137 Score = 140 bits (354), Expect = 5e-32, Method: Composition-based stats. Identities = 32/137 (23%), Positives = 53/137 (38%), Gaps = 11/137 (8%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 R R A Q L+ ++ + + + T Y E+ +I G Sbjct: 5 RHQIREIAFQTLFALNTNDQTDWKDFFQVLT-----------SGKYGDDYPEYLHQLISG 53 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135 V++ K ID I L WS R+ IL + E++ +P +V I+E + +A Sbjct: 54 VLEHKSEIDHTIEKYLASSWSLERIARTDLIILEIAIYEMVYVDDMPAKVSINEAIELAK 113 Query: 136 DFFYGDEPKFINAVLDK 152 F KF+N +L Sbjct: 114 KFSDDRSRKFVNGILSH 130 >gi|323488925|ref|ZP_08094162.1| N utilization substance protein B-like protein (NusB-like protein) [Planococcus donghaensis MPA1U2] gi|323397317|gb|EGA90126.1| N utilization substance protein B-like protein (NusB-like protein) [Planococcus donghaensis MPA1U2] Length = 129 Score = 140 bits (354), Expect = 5e-32, Method: Composition-based stats. Identities = 33/139 (23%), Positives = 56/139 (40%), Gaps = 17/139 (12%) Query: 15 RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74 +R AR A+Q L+Q++ + E + V + ++ +++ Sbjct: 2 KRHEAREKALQTLFQLEGTELTINEAMDH----------------VMAGENDNFYDLLVQ 45 Query: 75 GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134 G ID + L E WS RL I +ILR + EL P V+++E + + Sbjct: 46 GTYTNMATIDEKLVDHL-ENWSIERLPKIERTILRMAIFELEYMEDAPARVVMNEAIELC 104 Query: 135 HDFFYGDEPKFINAVLDKV 153 F +F+N VL K Sbjct: 105 KTFGDDKSSRFVNGVLSKF 123 >gi|172040644|ref|YP_001800358.1| transcription antitermination protein NusB [Corynebacterium urealyticum DSM 7109] gi|171851948|emb|CAQ04924.1| N utilization substance protein B [Corynebacterium urealyticum DSM 7109] Length = 248 Score = 140 bits (354), Expect = 5e-32, Method: Composition-based stats. Identities = 42/180 (23%), Positives = 75/180 (41%), Gaps = 21/180 (11%) Query: 4 QDNKKDLKLSHR--RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVY 61 +D + + R R AR AV L++ + +I+ E + ++ Sbjct: 28 KDERSAARFKRRGARYKARRRAVDILFEAEFRDIDPVDIMEERAELAKDQENQIKPIP-- 85 Query: 62 LHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSV 121 E+ I+ GV ID I+ LT W+ R+ + +++R EL+ V Sbjct: 86 -----EYTSQIVPGVASNLDAIDDAIAVHLTSDWTLDRIPAVDRAVMRVAAWELMFNADV 140 Query: 122 PVEVIISEYVCIAHDFFYGDEPKFINAVLDKV------------SRKEEIKRSGCVSAIT 169 P V +SE + +A ++ + P ++NAVLD V + + E ++SG S T Sbjct: 141 PHRVALSEGIELASEYSHVKAPDYVNAVLDGVATDADAAMADRLAAQREQEQSGSESGTT 200 >gi|50914880|ref|YP_060852.1| transcription antitermination protein NusB [Streptococcus pyogenes MGAS10394] gi|50903954|gb|AAT87669.1| N utilization substance protein B [Streptococcus pyogenes MGAS10394] Length = 156 Score = 140 bits (354), Expect = 6e-32, Method: Composition-based stats. Identities = 35/143 (24%), Positives = 69/143 (48%), Gaps = 6/143 (4%) Query: 14 HRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVII 73 + R R A QAL+ I+ + E+++ + + D ++ L + + + ++ Sbjct: 13 NSRRDLRERAFQALFNIE----TGAELLAA-SQFAYGYDKVTGEDAQVLELPI-FLLSLV 66 Query: 74 HGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCI 133 GV + K+ +D LIS+ L + WS RL + ++LR G+ E+ P V ++E + + Sbjct: 67 TGVNNHKEELDNLISTHLKKGWSLERLTLTDKTLLRLGLFEIKYFDETPDRVALNEIIEV 126 Query: 134 AHDFFYGDEPKFINAVLDKVSRK 156 A + KFIN +L + + Sbjct: 127 AKKYSDETSAKFINGLLSQYVSE 149 >gi|319779127|ref|YP_004130040.1| Transcription termination protein NusB [Taylorella equigenitalis MCE9] gi|317109151|gb|ADU91897.1| Transcription termination protein NusB [Taylorella equigenitalis MCE9] Length = 144 Score = 140 bits (354), Expect = 6e-32, Method: Composition-based stats. Identities = 34/149 (22%), Positives = 61/149 (40%), Gaps = 11/149 (7%) Query: 13 SHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVI 72 + R AR VQ LY + S D+ + + + DL ++ Sbjct: 7 TSARHTARELVVQGLYSWLLSNESQDIA---------SVDSHIREQENFDFADLNLYKTS 57 Query: 73 IHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVC 132 ++GV+ + + ++ S S L + +I+ EL+ P V+I+E + Sbjct: 58 LYGVIQNADSLREEFAPFISR--SASELSPVEHAIMLLATYELLHFPETPYRVVINEAIE 115 Query: 133 IAHDFFYGDEPKFINAVLDKVSRKEEIKR 161 +A +F D KFIN LDK++ K + Sbjct: 116 LAKEFGGTDGFKFINGALDKLAEKIRVHE 144 >gi|46579608|ref|YP_010416.1| N utilization substance protein B [Desulfovibrio vulgaris str. Hildenborough] gi|120602904|ref|YP_967304.1| NusB antitermination factor [Desulfovibrio vulgaris DP4] gi|81566935|sp|Q72CT6|NUSB_DESVH RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|166215687|sp|A1VEL1|NUSB_DESVV RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|46449023|gb|AAS95675.1| N utilization substance protein B [Desulfovibrio vulgaris str. Hildenborough] gi|120563133|gb|ABM28877.1| NusB antitermination factor [Desulfovibrio vulgaris DP4] gi|311233412|gb|ADP86266.1| NusB antitermination factor [Desulfovibrio vulgaris RCH1] Length = 153 Score = 140 bits (354), Expect = 6e-32, Method: Composition-based stats. Identities = 35/148 (23%), Positives = 61/148 (41%), Gaps = 6/148 (4%) Query: 11 KLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFR 70 K + R AR A Q LY + + E Y D S + Sbjct: 4 KGTPSRRAARALAFQILYGLGFS--PAASVKQLREAYASSPDVADKGRSPQPEG---FAW 58 Query: 71 VIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEY 130 +I G+ + +ID +I ++ W R+ + ++LR V E++ VP +V I+E Sbjct: 59 ELIEGIWTEQANIDEVIG-LFSQNWRIDRIGRVELTLLRIAVYEMLYRIDVPPKVAINEA 117 Query: 131 VCIAHDFFYGDEPKFINAVLDKVSRKEE 158 + ++ F + FIN +LD ++ E Sbjct: 118 LELSKQFGDANARGFINGILDAAAKALE 145 >gi|306826738|ref|ZP_07460040.1| transcription antitermination factor NusB [Streptococcus pyogenes ATCC 10782] gi|68052494|sp|Q5XA94|NUSB_STRP6 RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|304431027|gb|EFM34034.1| transcription antitermination factor NusB [Streptococcus pyogenes ATCC 10782] Length = 150 Score = 140 bits (354), Expect = 6e-32, Method: Composition-based stats. Identities = 35/143 (24%), Positives = 69/143 (48%), Gaps = 6/143 (4%) Query: 14 HRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVII 73 + R R A QAL+ I+ + E+++ + + D ++ L + + + ++ Sbjct: 7 NSRRDLRERAFQALFNIE----TGAELLAA-SQFAYGYDKVTGEDAQVLELPI-FLLSLV 60 Query: 74 HGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCI 133 GV + K+ +D LIS+ L + WS RL + ++LR G+ E+ P V ++E + + Sbjct: 61 TGVNNHKEELDNLISTHLKKGWSLERLTLTDKTLLRLGLFEIKYFDETPDRVALNEIIEV 120 Query: 134 AHDFFYGDEPKFINAVLDKVSRK 156 A + KFIN +L + + Sbjct: 121 AKKYSDETSAKFINGLLSQYVSE 143 >gi|116333616|ref|YP_795143.1| transcription antitermination protein NusB [Lactobacillus brevis ATCC 367] gi|122269697|sp|Q03RR0|NUSB_LACBA RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|116098963|gb|ABJ64112.1| NusB antitermination factor [Lactobacillus brevis ATCC 367] Length = 142 Score = 140 bits (354), Expect = 6e-32, Method: Composition-based stats. Identities = 29/141 (20%), Positives = 56/141 (39%), Gaps = 9/141 (6%) Query: 12 LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71 ++ R R A Q L+ ++ + + + + L + L ++ Sbjct: 1 MTLTRHQIRERAFQMLFALNANPEADHDALYQRV---------LTDDPNQLVPVPDYLAT 51 Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131 +++GV+ + +D I L+ W R+ ILR E+ VP V ++E + Sbjct: 52 LVNGVLAHQSELDAQIDQYLSTGWQLKRIAKTDLVILRMAFYEIEHVDDVPNRVAVNEAL 111 Query: 132 CIAHDFFYGDEPKFINAVLDK 152 +A +F +FIN VL Sbjct: 112 ELAKNFSDDRSRRFINGVLAH 132 >gi|255318080|ref|ZP_05359325.1| transcription antitermination factor NusB [Acinetobacter radioresistens SK82] gi|262380575|ref|ZP_06073729.1| transcription antitermination factor NusB [Acinetobacter radioresistens SH164] gi|255304903|gb|EET84075.1| transcription antitermination factor NusB [Acinetobacter radioresistens SK82] gi|262298021|gb|EEY85936.1| transcription antitermination factor NusB [Acinetobacter radioresistens SH164] Length = 149 Score = 140 bits (353), Expect = 7e-32, Method: Composition-based stats. Identities = 35/140 (25%), Positives = 64/140 (45%), Gaps = 13/140 (9%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 + AR AVQ +Y+ + EI + E+ VDL ++ ++ Sbjct: 12 KRKARRFAVQGIYEWQMSHNPVHEIEA-----------RTRAENAMHKVDLGYYHELLTQ 60 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135 V+ + + +D L+ L + LD + + LR G EL + +P V++ E + +A Sbjct: 61 VVAQHEALDTLLVPVLDRE--LGALDGVELATLRLGAYELRDHLEIPYRVVLDEAIELAK 118 Query: 136 DFFYGDEPKFINAVLDKVSR 155 F D K+IN VLD++++ Sbjct: 119 HFGGADSHKYINGVLDRLAQ 138 >gi|253995875|ref|YP_003047939.1| NusB antitermination factor [Methylotenera mobilis JLW8] gi|253982554|gb|ACT47412.1| NusB antitermination factor [Methylotenera mobilis JLW8] Length = 178 Score = 140 bits (353), Expect = 7e-32, Method: Composition-based stats. Identities = 37/153 (24%), Positives = 67/153 (43%), Gaps = 16/153 (10%) Query: 13 SHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVI 72 S R +R ++A+Y+ + +++ ++ + Y D +F+ + Sbjct: 37 SQNRRKSRELVLKAVYRGMLNDSELSQVFR-----------DMRDDPDYNKADEAYFKHL 85 Query: 73 IHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVC 132 + V + ID I + + L + +ILR EL+ S+P V+I+E V Sbjct: 86 LQAVTENLTAIDGKIVGFIDR--TLEELSPVEHAILRIAGCELMFDLSIPYRVVINEGVE 143 Query: 133 IAHDFFYGDEPKFINAVLDKVS---RKEEIKRS 162 +A F D K+IN VLDK + R E+K + Sbjct: 144 LAKVFGGTDGHKYINGVLDKFAADVRAAEVKAA 176 >gi|154248795|ref|YP_001409620.1| transcription antitermination protein NusB [Fervidobacterium nodosum Rt17-B1] gi|171769316|sp|A7HJ80|NUSB_FERNB RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|154152731|gb|ABS59963.1| NusB antitermination factor [Fervidobacterium nodosum Rt17-B1] Length = 141 Score = 140 bits (353), Expect = 7e-32, Method: Composition-based stats. Identities = 41/151 (27%), Positives = 69/151 (45%), Gaps = 13/151 (8%) Query: 12 LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71 + +R + R V+ +Q + EI SE + D F+ Sbjct: 1 MVSKRRVLREMVVKLFFQREFRHNEFEEIFSETLNKIRDNTIKAD------------FKR 48 Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131 + GV ID +IS+ L WSF RL + ++LR G ELI ++P+EV I+E + Sbjct: 49 YVEGVFHNLSTIDNIISNHLI-NWSFDRLSYLERNVLRVGTYELIYEENIPIEVTINEMI 107 Query: 132 CIAHDFFYGDEPKFINAVLDKVSRKEEIKRS 162 IA + + KF+N +LD+++++ K Sbjct: 108 EIAKKYGSEESGKFVNGILDRIAKEHAPKEK 138 >gi|157150386|ref|YP_001451127.1| transcription antitermination protein NusB [Streptococcus gordonii str. Challis substr. CH1] gi|157075180|gb|ABV09863.1| transcription antitermination factor NusB [Streptococcus gordonii str. Challis substr. CH1] Length = 137 Score = 140 bits (353), Expect = 7e-32, Method: Composition-based stats. Identities = 39/142 (27%), Positives = 64/142 (45%), Gaps = 9/142 (6%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 R R A QAL ++ G I E + + D E + + + +++G Sbjct: 5 RRDLRERAFQALMSLEYDGD-----IVEACRFAYLHDKEEEEQVELPI----FLLNLVNG 55 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135 VM K +D I+ L W+ RL ++ +ILR G+ EL+E P V ++E + +A Sbjct: 56 VMQSKSELDDKITQYLKSGWTLDRLTLVEKNILRLGLYELLEYDETPQLVAVNEAIELAK 115 Query: 136 DFFYGDEPKFINAVLDKVSRKE 157 F KFIN +L + +E Sbjct: 116 KFSDEKSSKFINGILSQFVTEE 137 >gi|18310806|ref|NP_562740.1| transcription antitermination protein NusB [Clostridium perfringens str. 13] gi|110801167|ref|YP_696507.1| transcription antitermination protein NusB [Clostridium perfringens ATCC 13124] gi|168206122|ref|ZP_02632127.1| N utilization substance protein B [Clostridium perfringens E str. JGS1987] gi|168210813|ref|ZP_02636438.1| N utilization substance protein B [Clostridium perfringens B str. ATCC 3626] gi|168214398|ref|ZP_02640023.1| N utilization substance protein B [Clostridium perfringens CPE str. F4969] gi|169343548|ref|ZP_02864547.1| N utilization substance protein B [Clostridium perfringens C str. JGS1495] gi|182625668|ref|ZP_02953437.1| N utilization substance protein B [Clostridium perfringens D str. JGS1721] gi|22095945|sp|Q8XJD6|NUSB_CLOPE RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|119390759|sp|Q0TPD3|NUSB_CLOP1 RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|18145487|dbj|BAB81530.1| probable N utilization substance protein B [Clostridium perfringens str. 13] gi|110675814|gb|ABG84801.1| N utilization substance protein B [Clostridium perfringens ATCC 13124] gi|169298108|gb|EDS80198.1| N utilization substance protein B [Clostridium perfringens C str. JGS1495] gi|170662434|gb|EDT15117.1| N utilization substance protein B [Clostridium perfringens E str. JGS1987] gi|170711117|gb|EDT23299.1| N utilization substance protein B [Clostridium perfringens B str. ATCC 3626] gi|170714129|gb|EDT26311.1| N utilization substance protein B [Clostridium perfringens CPE str. F4969] gi|177909070|gb|EDT71545.1| N utilization substance protein B [Clostridium perfringens D str. JGS1721] Length = 135 Score = 140 bits (353), Expect = 8e-32, Method: Composition-based stats. Identities = 37/144 (25%), Positives = 66/144 (45%), Gaps = 10/144 (6%) Query: 15 RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74 R +R +Q YQ++I + E + + + +L DL + + + Sbjct: 2 NRVKSREYLLQLAYQMEITSETALETFNSFMENEDISKDDL---------DLAYIKSGLL 52 Query: 75 GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134 G+ + K+ +D LI S L + W +R+ + SILR E++ VP +V I+E + + Sbjct: 53 GIEENKEKLDSLIESQLVK-WKLNRISKVNLSILRISTYEILFAEDVPGKVSINEAIELC 111 Query: 135 HDFFYGDEPKFINAVLDKVSRKEE 158 + FIN VLDKV + + Sbjct: 112 KKYSDNKSVSFINGVLDKVYKNMQ 135 >gi|150020739|ref|YP_001306093.1| transcription antitermination protein NusB [Thermosipho melanesiensis BI429] gi|166215726|sp|A6LLA7|NUSB_THEM4 RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|149793260|gb|ABR30708.1| NusB antitermination factor [Thermosipho melanesiensis BI429] Length = 141 Score = 140 bits (353), Expect = 8e-32, Method: Composition-based stats. Identities = 39/151 (25%), Positives = 65/151 (43%), Gaps = 13/151 (8%) Query: 12 LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71 + R R A ++L+Q D E IS+ + + E Sbjct: 1 MLKSRHKMREAIFKSLFQWDFNKEEILEEISKEHIVSLEPNLQ------------ELAVN 48 Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131 + G+ + ID +IS L + W+ RL + +ILR G ELI +P+EV + E + Sbjct: 49 YLKGIRENIDVIDEIISKYL-KNWTLERLSVTDRNILRLGTYELIYVDDIPIEVTLDEMI 107 Query: 132 CIAHDFFYGDEPKFINAVLDKVSRKEEIKRS 162 + + + KF+N VLDK+++ E K Sbjct: 108 ELGKTYGTENSGKFVNGVLDKIAKAEAPKEK 138 >gi|24380206|ref|NP_722161.1| transcription antitermination protein NusB [Streptococcus mutans UA159] gi|32171640|sp|Q8DSE9|NUSB_STRMU RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|24378212|gb|AAN59467.1|AE015011_6 putative transcription termination factor [Streptococcus mutans UA159] Length = 142 Score = 140 bits (353), Expect = 8e-32, Method: Composition-based stats. Identities = 41/143 (28%), Positives = 65/143 (45%), Gaps = 9/143 (6%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 R R A QAL+ ++ G + T + Y + + E + E + +I G Sbjct: 9 RRDLRERAFQALFSLEFGGDNLT---AARFAYTYDKNEEEEAELPL------FLLTLIQG 59 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135 V D ++ ID IS L W+ SRL +I S+LR G+ E+ P V ++E + IA Sbjct: 60 VSDCRREIDKNISIHLKSGWTLSRLTLIDKSLLRLGLYEIKYHKETPERVALNEIIEIAK 119 Query: 136 DFFYGDEPKFINAVLDKVSRKEE 158 + KFIN VL + + + Sbjct: 120 KYSDEKSSKFINGVLSQFVLERK 142 >gi|167628417|ref|YP_001678916.1| transcription antitermination factor nusb [Heliobacterium modesticaldum Ice1] gi|238687883|sp|B0TEI6|NUSB_HELMI RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|167591157|gb|ABZ82905.1| transcription antitermination factor nusb [Heliobacterium modesticaldum Ice1] Length = 206 Score = 140 bits (353), Expect = 9e-32, Method: Composition-based stats. Identities = 31/152 (20%), Positives = 66/152 (43%), Gaps = 12/152 (7%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 R R A+Q L+ D+ + +Y + F + R ++ G Sbjct: 3 RRQGRETALQTLFMADVGRMEPAYAL-QYASEEFG----------ISEAAAAFARELVEG 51 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135 + ++ ID I L ++W+ R+ + ++LR + E++ +P+ I+E + +A Sbjct: 52 AVANRETIDGNIRR-LAKEWNLERMPHVDRNLLRVAIFEMLFREDIPLNAAINEAIELAK 110 Query: 136 DFFYGDEPKFINAVLDKVSRKEEIKRSGCVSA 167 + + KF+N +L +++R+ R SA Sbjct: 111 IYANEESAKFVNGILGQLARELREARGEKTSA 142 >gi|254293744|ref|YP_003059767.1| NusB antitermination factor [Hirschia baltica ATCC 49814] gi|254042275|gb|ACT59070.1| NusB antitermination factor [Hirschia baltica ATCC 49814] Length = 163 Score = 140 bits (353), Expect = 9e-32, Method: Composition-based stats. Identities = 63/157 (40%), Positives = 83/157 (52%), Gaps = 7/157 (4%) Query: 1 MTIQ---DNKKDLKLSH-RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELD 56 MT + D KL R ARLAAVQALYQI+ G + +I +Y D E Sbjct: 1 MTNEPAIDKDAARKLRKLSRSGARLAAVQALYQIEQTGRAGRAVIEDYCEDGIGLDDEGR 60 Query: 57 VESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELI 116 D E FR + GV++ I+L I L + W RLD +ILRAGV EL+ Sbjct: 61 PIEA---ADPEIFRNTVEGVIESLDDINLAIVKRLADGWKIERLDATSRAILRAGVYELM 117 Query: 117 ECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKV 153 + +P ++I+ EYV IAH FF EP+FINA+L+ V Sbjct: 118 KRDDLPAQIILDEYVSIAHAFFDDAEPRFINALLENV 154 >gi|217077046|ref|YP_002334762.1| transcription antitermination protein NusB [Thermosipho africanus TCF52B] gi|226738907|sp|B7IH57|NUSB_THEAB RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|217036899|gb|ACJ75421.1| transcription antitermination factor NusB [Thermosipho africanus TCF52B] Length = 142 Score = 139 bits (352), Expect = 9e-32, Method: Composition-based stats. Identities = 38/151 (25%), Positives = 68/151 (45%), Gaps = 12/151 (7%) Query: 12 LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71 + RR R + +AL+Q D ++ + + + E E Y + Sbjct: 1 MIKRRHKMRESVFKALFQWDFQKD--EDLTEIAKQHVSLLEDEKLREQAYSY-------- 50 Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131 I G+ + +D +IS L + W+ RL + +ILR G EL+ VP+EV + E + Sbjct: 51 -IEGIKKTIESLDEIISKYL-QNWTLDRLSVTDRNILRLGTYELLYVDDVPIEVTLDEMI 108 Query: 132 CIAHDFFYGDEPKFINAVLDKVSRKEEIKRS 162 + + + KF+N VLD++++ E K Sbjct: 109 ELGKTYGTENSGKFVNGVLDRIAKGEAPKEK 139 >gi|290579819|ref|YP_003484211.1| putative transcription termination factor [Streptococcus mutans NN2025] gi|254996718|dbj|BAH87319.1| putative transcription termination factor [Streptococcus mutans NN2025] Length = 147 Score = 139 bits (352), Expect = 9e-32, Method: Composition-based stats. Identities = 41/143 (28%), Positives = 65/143 (45%), Gaps = 9/143 (6%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 R R A QAL+ ++ G + T + Y + + E + E + +I G Sbjct: 14 RRDLRERAFQALFSLEFGGDNLT---AARFAYTYDKNEEEEAELPL------FLLTLIQG 64 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135 V D ++ ID IS L W+ SRL +I S+LR G+ E+ P V ++E + IA Sbjct: 65 VYDCRREIDKNISIHLKSGWTLSRLTLIDKSLLRLGLYEIKYHKETPERVALNEIIEIAK 124 Query: 136 DFFYGDEPKFINAVLDKVSRKEE 158 + KFIN VL + + + Sbjct: 125 KYSDEKSSKFINGVLSQFVLERK 147 >gi|324998653|ref|ZP_08119765.1| NusB antitermination factor [Pseudonocardia sp. P1] Length = 139 Score = 139 bits (352), Expect = 9e-32, Method: Composition-based stats. Identities = 35/141 (24%), Positives = 63/141 (44%), Gaps = 13/141 (9%) Query: 14 HRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVII 73 R AR A+ L++ + G + E+++ E+ E+ ++ Sbjct: 2 RARTKARKRALDILFEAEARGEAPLEVLT------------ARRETDDAPPVQEYAARLV 49 Query: 74 HGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCI 133 GV ++ ID L++ E W+ R+ + +LR GV EL+ V V I+E V + Sbjct: 50 EGVATHRERIDQLLAEH-AEGWTVDRMPAVDRGLLRIGVYELLWVDDVDDPVAITEAVEL 108 Query: 134 AHDFFYGDEPKFINAVLDKVS 154 A D P+++N VL ++S Sbjct: 109 ARTLSTDDSPRYVNGVLGQIS 129 >gi|163790200|ref|ZP_02184633.1| transcription antitermination protein NusB [Carnobacterium sp. AT7] gi|159874475|gb|EDP68546.1| transcription antitermination protein NusB [Carnobacterium sp. AT7] Length = 147 Score = 139 bits (352), Expect = 9e-32, Method: Composition-based stats. Identities = 37/151 (24%), Positives = 70/151 (46%), Gaps = 5/151 (3%) Query: 12 LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71 +S R R A+Q+L+Q+ + + E E + ++ +L E + V + + Sbjct: 1 MSLTRRDIREKALQSLFQLSVNEDLSKE---EAMQHALISENDLIDEVETVLV-PSYLDM 56 Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131 ++ GVM+++ ID I + L E WS +RL I+R + E++ VP V ++E + Sbjct: 57 LVSGVMEKQDEIDEKIKTHL-ENWSLNRLAKTDLIIIRVAIFEMMYVSDVPDRVALNEAL 115 Query: 132 CIAHDFFYGDEPKFINAVLDKVSRKEEIKRS 162 I + KF+N VL + + + Sbjct: 116 EITKKYSDEKSRKFVNGVLANIVNENSENEA 146 >gi|182683397|ref|YP_001835144.1| transcription antitermination protein NusB [Streptococcus pneumoniae CGSP14] gi|182628731|gb|ACB89679.1| transcription antitermination protein NusB [Streptococcus pneumoniae CGSP14] Length = 146 Score = 139 bits (352), Expect = 9e-32, Method: Composition-based stats. Identities = 41/158 (25%), Positives = 68/158 (43%), Gaps = 12/158 (7%) Query: 1 MTIQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESV 60 MT + L RR + R A QAL ++ G RF + + V Sbjct: 1 MTRTSSMTSPLLESRRQL-RKCAFQALMSLEF-GTDVET------ACRFAYTHDREYTDV 52 Query: 61 YLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHS 120 L + ++ GV +K+ +D I+ L W+ RL ++ ++LR GV E+ Sbjct: 53 QLPA---FLIDLVSGVQAKKEELDKQITQHLKAGWTIERLTLVERNLLRLGVFEITSF-D 108 Query: 121 VPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEE 158 P V I+E + +A DF +FIN +L + +E+ Sbjct: 109 TPQLVAINEAIELAKDFSDQKSARFINGLLSQFVTEEQ 146 >gi|212702193|ref|ZP_03310321.1| hypothetical protein DESPIG_00204 [Desulfovibrio piger ATCC 29098] gi|212674398|gb|EEB34881.1| hypothetical protein DESPIG_00204 [Desulfovibrio piger ATCC 29098] Length = 157 Score = 139 bits (352), Expect = 1e-31, Method: Composition-based stats. Identities = 36/157 (22%), Positives = 63/157 (40%), Gaps = 11/157 (7%) Query: 12 LSHRRGIARLAAVQALYQIDIIG-CSTTEIISEYETYRFCADTELDVESVYLHVDLEWFR 70 S R R A Q LY + S ++ + ++E D Sbjct: 5 KSASRRGERAQAFQVLYGLSFADATSLEDVRRAFLQSPDHQESEEGELPSGFSWD----- 59 Query: 71 VIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEY 130 ++ GV R+ +D IS + W R+ + ++LR + EL+ VP +V I+E Sbjct: 60 -LVQGVWSRRDELDKTISRF-SRNWRVDRMGRVELTLLRLAMYELLYRQDVPAKVAINEA 117 Query: 131 VCIAHDFFYGDEPKFINAVLDKVSRKEEIKRSGCVSA 167 + + F + F+N +LD ++ E G +SA Sbjct: 118 LELTRQFGEDNATSFVNGILDAAAKALE---KGSLSA 151 >gi|15644510|ref|NP_229562.1| transcription antitermination protein NusB [Thermotoga maritima MSB8] gi|7387977|sp|Q9X286|NUSB_THEMA RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|52695948|pdb|1TZT|A Chain A, T. Maritima Nusb, P21 gi|52695949|pdb|1TZT|B Chain B, T. Maritima Nusb, P21 gi|52695950|pdb|1TZU|A Chain A, T. Maritima Nusb, P212121 gi|52695951|pdb|1TZV|A Chain A, T. Maritima Nusb, P3121, Form 1 gi|52695952|pdb|1TZW|A Chain A, T. Maritima Nusb, P3121, Form 2 gi|52695953|pdb|1TZX|A Chain A, T. Maritima Nusb, P3221 gi|52695954|pdb|1TZX|B Chain B, T. Maritima Nusb, P3221 gi|4982344|gb|AAD36829.1|AE001815_3 N utilization substance protein B [Thermotoga maritima MSB8] gi|22859189|emb|CAD45556.1| N utilisation substance protein B [Expression vector pNCO113-TM-nusB] Length = 142 Score = 139 bits (352), Expect = 1e-31, Method: Composition-based stats. Identities = 45/154 (29%), Positives = 72/154 (46%), Gaps = 16/154 (10%) Query: 10 LKLSHRRGIARLAAVQALYQIDII-GCSTTEIISEYETYRFCADTELDVESVYLHVDLEW 68 +K RR RLA +AL+Q + +I+ E + Y E Sbjct: 1 MKTPRRRM--RLAVFKALFQHEFRRDEDLEQILEEIL------------DETYDKKAKED 46 Query: 69 FRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIIS 128 R I G+ + ID LIS L EKWS +RL ++ ++LR EL+ +P+EV I Sbjct: 47 ARRYIRGIKENLSMIDDLISRYL-EKWSLNRLSVVDRNVLRLATYELLFEKDIPIEVTID 105 Query: 129 EYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRS 162 E + IA + + KF+N +LD+++++ K Sbjct: 106 EAIEIAKRYGTENSGKFVNGILDRIAKEHAPKEK 139 >gi|322382777|ref|ZP_08056621.1| transcription antitermination-like protein NusB [Paenibacillus larvae subsp. larvae B-3650] gi|321153246|gb|EFX45692.1| transcription antitermination-like protein NusB [Paenibacillus larvae subsp. larvae B-3650] Length = 133 Score = 139 bits (352), Expect = 1e-31, Method: Composition-based stats. Identities = 25/129 (19%), Positives = 56/129 (43%), Gaps = 2/129 (1%) Query: 30 IDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISS 89 + + + E + + E V+ + ++ G + ++ ID ++S Sbjct: 1 MTMNEVTAKEAVDSVIDEALH-ENEGAVDLNGDTSAKPYIHELVEGTLTNRERIDQILSE 59 Query: 90 CLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAV 149 L + W RL + +LR E++ P +V+++E + +A F + KF+N V Sbjct: 60 YL-KGWQMDRLSKVDREVLRMAAYEMLYRQDTPPKVVVNEAIELAKHFGTDESGKFVNGV 118 Query: 150 LDKVSRKEE 158 L K+ ++ + Sbjct: 119 LGKLIKEMD 127 >gi|78044961|ref|YP_360813.1| transcription antitermination factor NusB [Carboxydothermus hydrogenoformans Z-2901] gi|119390754|sp|Q3AAM1|NUSB_CARHZ RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|77997076|gb|ABB15975.1| transcription antitermination factor NusB [Carboxydothermus hydrogenoformans Z-2901] Length = 144 Score = 139 bits (352), Expect = 1e-31, Method: Composition-based stats. Identities = 35/140 (25%), Positives = 69/140 (49%), Gaps = 7/140 (5%) Query: 15 RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74 R AR A +AL+ +D T + + + A+ ++ E + +++ R ++ Sbjct: 2 NRHTARELAFKALFGLDFAPEKTLDTLESLWAEK-IAEGKIPPEKL-----VDFSRELVR 55 Query: 75 GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134 GV+++K+ +D +I W F RL + ++LR + E++ + + V I E V +A Sbjct: 56 GVIEKKERLDEIIRRR-AIGWDFKRLAKVDKTLLRLALYEMLYRPDIDIPVSIDEAVELA 114 Query: 135 HDFFYGDEPKFINAVLDKVS 154 + + PKFIN +L V+ Sbjct: 115 KVYGEEESPKFINGILGYVA 134 >gi|170288851|ref|YP_001739089.1| NusB antitermination factor [Thermotoga sp. RQ2] gi|281412471|ref|YP_003346550.1| NusB antitermination factor [Thermotoga naphthophila RKU-10] gi|238688836|sp|B1LAQ8|NUSB_THESQ RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|170176354|gb|ACB09406.1| NusB antitermination factor [Thermotoga sp. RQ2] gi|281373574|gb|ADA67136.1| NusB antitermination factor [Thermotoga naphthophila RKU-10] Length = 142 Score = 139 bits (352), Expect = 1e-31, Method: Composition-based stats. Identities = 45/154 (29%), Positives = 71/154 (46%), Gaps = 16/154 (10%) Query: 10 LKLSHRRGIARLAAVQALYQIDII-GCSTTEIISEYETYRFCADTELDVESVYLHVDLEW 68 +K RR RLA +AL+Q + +I+ E + Y E Sbjct: 1 MKTPRRRM--RLAVFKALFQHEFRRDEDLEQILEEIL------------DETYDKKAKED 46 Query: 69 FRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIIS 128 R I G+ + ID LIS L EKWS +RL + ++LR EL+ +P+EV I Sbjct: 47 ARRYIRGIKENLPMIDNLISRYL-EKWSLNRLSAVDRNVLRLATYELLFEKDIPIEVTID 105 Query: 129 EYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRS 162 E + IA + + KF+N +LD+++++ K Sbjct: 106 EAIEIAKRYGTENSGKFVNGILDRIAKEHAPKEK 139 >gi|239917765|ref|YP_002957323.1| transcription antitermination factor NusB [Micrococcus luteus NCTC 2665] gi|239838972|gb|ACS30769.1| transcription antitermination factor NusB [Micrococcus luteus NCTC 2665] Length = 150 Score = 139 bits (351), Expect = 1e-31, Method: Composition-based stats. Identities = 38/143 (26%), Positives = 70/143 (48%), Gaps = 14/143 (9%) Query: 11 KLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFR 70 + + R +R AV+ L++ + G + +E I T R D +++ + + Sbjct: 13 RGTTARSRSRQRAVEILFEAEQRGSTVSEGIR---TRRESTDLQVN----------AYTQ 59 Query: 71 VIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEY 130 ++ GV+ ++ +D +SS + WS R+ + +ILR G EL+ VP V ISE Sbjct: 60 RLVEGVIADQERLDEALSSY-SRGWSLDRMPAVDRAILRVGAWELLFQDDVPDAVAISEA 118 Query: 131 VCIAHDFFYGDEPKFINAVLDKV 153 V +A D P+F+N +L ++ Sbjct: 119 VALAAQLSTDDSPEFVNGLLGRL 141 >gi|117923480|ref|YP_864097.1| NusB antitermination factor [Magnetococcus sp. MC-1] gi|117607236|gb|ABK42691.1| NusB antitermination factor [Magnetococcus sp. MC-1] Length = 165 Score = 139 bits (351), Expect = 1e-31, Method: Composition-based stats. Identities = 40/166 (24%), Positives = 72/166 (43%), Gaps = 19/166 (11%) Query: 1 MTIQDNK--KDLKLSHR--RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELD 56 M + +K K R R +R A+Q LY +I + Sbjct: 1 MAHKSDKSGKSRNTMRRGGRSKSREIALQVLYGCEIAHDPVGPALRNMLE---------- 50 Query: 57 VESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELI 116 + +D ++F + GV ++ +D I WS R ++ +ILR G+ EL+ Sbjct: 51 -DPHSEGMDQDYFSQLTLGVEAEREVLDSWIGRA-GAAWSMDRFSVVDHNILRLGIYELL 108 Query: 117 ECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVS---RKEEI 159 + VP VI++E + ++ F + +F+N V+DKV+ R+E+ Sbjct: 109 KQPEVPHRVILNEAIELSKRFGGEESSRFVNGVMDKVANLVREEDA 154 >gi|169824540|ref|YP_001692151.1| transcription terminator [Finegoldia magna ATCC 29328] gi|297588522|ref|ZP_06947165.1| transcription antitermination factor NusB [Finegoldia magna ATCC 53516] gi|303233660|ref|ZP_07320314.1| transcription antitermination factor NusB [Finegoldia magna BVS033A4] gi|238687751|sp|B0S1M1|NUSB_FINM2 RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|167831345|dbj|BAG08261.1| transcription terminator [Finegoldia magna ATCC 29328] gi|297573895|gb|EFH92616.1| transcription antitermination factor NusB [Finegoldia magna ATCC 53516] gi|302495094|gb|EFL54846.1| transcription antitermination factor NusB [Finegoldia magna BVS033A4] Length = 137 Score = 139 bits (351), Expect = 1e-31, Method: Composition-based stats. Identities = 37/143 (25%), Positives = 73/143 (51%), Gaps = 12/143 (8%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 R +R +A+Q +Y++++ G + I E+ Y+ D+E+F+ I+ Sbjct: 3 RRQSRKSAMQLIYEMNMNGDYDKQRIEEFCKYQNIN-----------KNDIEFFKEIVLN 51 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135 ++ I +I + T++W+ R++ + SIL+ GV E++ S P V I+E V +A Sbjct: 52 FIEHIDDIVNIIENN-TKQWNLDRINKLDLSILQVGVCEILYVESTPDSVAINEAVELAK 110 Query: 136 DFFYGDEPKFINAVLDKVSRKEE 158 ++ FIN +L V +++E Sbjct: 111 EYSTEKSYSFINGILGSVLKRKE 133 >gi|168215452|ref|ZP_02641077.1| N utilization substance protein B [Clostridium perfringens NCTC 8239] gi|182382114|gb|EDT79593.1| N utilization substance protein B [Clostridium perfringens NCTC 8239] Length = 135 Score = 139 bits (351), Expect = 1e-31, Method: Composition-based stats. Identities = 37/144 (25%), Positives = 66/144 (45%), Gaps = 10/144 (6%) Query: 15 RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74 R +R +Q YQ++I + E + + + +L DL + + + Sbjct: 2 NRVKSREYLLQLAYQMEITSETALETFNSFMENEDISKDDL---------DLAYIKSGLL 52 Query: 75 GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134 G+ + K+ +D LI S L + W +R+ + SILR E++ VP +V I+E + + Sbjct: 53 GIEENKEKLDSLIESQLVK-WKLNRISKVNLSILRISTYEILFAEDVPGKVSINEAIELC 111 Query: 135 HDFFYGDEPKFINAVLDKVSRKEE 158 + FIN VLDKV + + Sbjct: 112 KKYSDNKSVSFINGVLDKVYKNMK 135 >gi|238063911|ref|ZP_04608620.1| transcription antitermination factor nusB [Micromonospora sp. ATCC 39149] gi|237885722|gb|EEP74550.1| transcription antitermination factor nusB [Micromonospora sp. ATCC 39149] Length = 136 Score = 139 bits (351), Expect = 1e-31, Method: Composition-based stats. Identities = 36/139 (25%), Positives = 60/139 (43%), Gaps = 11/139 (7%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 R AR A+ L++ D+ E+++ Y E L + ++ G Sbjct: 4 RRKARKRALDVLFEADLRDRPPVEVLAGYVERIEKPHPEH----------LGYAVGLVEG 53 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135 V ID LI+S E W+ R+ + ++ R V EL+ + V ISE V +A Sbjct: 54 VAAHLGRIDELIASY-AEGWTLDRMPAVDRNLARIAVYELLYVDELDDAVAISEAVELAR 112 Query: 136 DFFYGDEPKFINAVLDKVS 154 D P+F+N VL +++ Sbjct: 113 QMSTDDSPRFLNGVLGRIA 131 >gi|148555686|ref|YP_001263268.1| NusB antitermination factor [Sphingomonas wittichii RW1] gi|148500876|gb|ABQ69130.1| NusB antitermination factor [Sphingomonas wittichii RW1] Length = 151 Score = 139 bits (351), Expect = 1e-31, Method: Composition-based stats. Identities = 42/132 (31%), Positives = 66/132 (50%), Gaps = 3/132 (2%) Query: 28 YQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLI 87 YQ ++ G ++ E+ +R A E + Y ++ +F ++ GV R+ ID I Sbjct: 23 YQQEMEGTPLAALLDEFHQHRLGATIE---DVEYAAAEVAFFDDLVKGVDARRAEIDAAI 79 Query: 88 SSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFIN 147 + L W+ RLD + ILR G ELI VP +ISEYV +A F+ E F+N Sbjct: 80 GARLASGWTLERLDRPMRQILRVGAYELIARPDVPTATVISEYVDVADAFYDKKEKGFVN 139 Query: 148 AVLDKVSRKEEI 159 VLD +++ + Sbjct: 140 GVLDGIAKAVRV 151 >gi|300909746|ref|ZP_07127207.1| transcription antitermination factor NusB [Lactobacillus reuteri SD2112] gi|300893611|gb|EFK86970.1| transcription antitermination factor NusB [Lactobacillus reuteri SD2112] Length = 141 Score = 139 bits (351), Expect = 1e-31, Method: Composition-based stats. Identities = 35/151 (23%), Positives = 61/151 (40%), Gaps = 12/151 (7%) Query: 11 KLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFR 70 K+S R + R A Q L+ + +I + YE + ++ + Sbjct: 3 KMSLNRHMIREEAFQVLFALQ--SDPEADIQTVYEAIPHHDEKQIP----------PYLL 50 Query: 71 VIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEY 130 +++GV + + +D I+ L W+ +RL ILR + E+ +VP V I+E Sbjct: 51 TLVNGVREHQDQLDEQINDLLASGWTINRLAKPDLVILRLALFEIQYAENVPTVVAINEA 110 Query: 131 VCIAHDFFYGDEPKFINAVLDKVSRKEEIKR 161 + + F KFIN L K R+ Sbjct: 111 LELTKTFSSDKSRKFINGALGKFERQVNTNN 141 >gi|332686256|ref|YP_004456030.1| transcription termination protein NusB [Melissococcus plutonius ATCC 35311] gi|332370265|dbj|BAK21221.1| transcription termination protein NusB [Melissococcus plutonius ATCC 35311] Length = 158 Score = 139 bits (351), Expect = 1e-31, Method: Composition-based stats. Identities = 37/143 (25%), Positives = 62/143 (43%), Gaps = 3/143 (2%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 R R A+QAL+ +D T + Y D + ++ + ++ G Sbjct: 8 RREIREKALQALFPLDFN---TELTKQDAIDYALMLDNYEVISEDQENLIPTYLDFLVDG 64 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135 V K +D +I L + W+F RL I ILR V E++ VP V ++E + +A Sbjct: 65 VCSHKNELDQVIKRLLGKNWTFERLSKIDTVILRMAVFEMMYSSDVPAPVALNEALELAK 124 Query: 136 DFFYGDEPKFINAVLDKVSRKEE 158 + + KF N +L V ++ E Sbjct: 125 KYSDDNARKFTNGILANVLKEIE 147 >gi|226941305|ref|YP_002796379.1| transcription antitermination protein NusB [Laribacter hongkongensis HLHK9] gi|254772644|sp|C1DB31|NUSB_LARHH RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|226716232|gb|ACO75370.1| NusB [Laribacter hongkongensis HLHK9] Length = 165 Score = 139 bits (351), Expect = 1e-31, Method: Composition-based stats. Identities = 37/152 (24%), Positives = 65/152 (42%), Gaps = 15/152 (9%) Query: 10 LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF 69 +K RR AR AVQ +YQ + + I + L + D F Sbjct: 1 MKTPRRR--AREFAVQGIYQWQLNALTPATI-----------EKNLRDNEQFAKADEALF 47 Query: 70 RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISE 129 R +++GV++ I+ I+S + + + ++L EL + P+ VII+E Sbjct: 48 RTLLYGVLNDPVRIESAIASHFER--APEDVSPVERAVLLMAAFELTQQAETPLAVIINE 105 Query: 130 YVCIAHDFFYGDEPKFINAVLDKVSRKEEIKR 161 + IA F + +F+N VLDK + + + Sbjct: 106 AIEIAKTFGGAEGHRFVNGVLDKYAAEVRPEE 137 >gi|68536104|ref|YP_250809.1| transcription antitermination protein NusB [Corynebacterium jeikeium K411] gi|119390762|sp|Q4JVG6|NUSB_CORJK RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|68263703|emb|CAI37191.1| N utilization substance protein B [Corynebacterium jeikeium K411] Length = 202 Score = 139 bits (351), Expect = 1e-31, Method: Composition-based stats. Identities = 36/156 (23%), Positives = 69/156 (44%), Gaps = 7/156 (4%) Query: 11 KLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFR 70 K R AR AV L++ + EI+ E + + ++ E+ + Sbjct: 18 KRHGSRYKARRRAVDILFEAEFRDIDPVEIVEERISLAKDSANQVKPVP-------EYTQ 70 Query: 71 VIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEY 130 I+ GV +D I+ L+ W RL + ++LR EL VP +V + E Sbjct: 71 QIVPGVATNLDALDEAIALHLSSDWQLDRLPAVDRAVLRVAAWELKFNDDVPPQVAVVEG 130 Query: 131 VCIAHDFFYGDEPKFINAVLDKVSRKEEIKRSGCVS 166 V +A ++ + P +I+AVLD +++ +++ ++ Sbjct: 131 VELASEYSHDKAPSYIHAVLDGINKDLQLQADLKIA 166 >gi|300870191|ref|YP_003785062.1| transcription antitermination protein NusB [Brachyspira pilosicoli 95/1000] gi|300687890|gb|ADK30561.1| transcription antitermination protein, NusB [Brachyspira pilosicoli 95/1000] Length = 174 Score = 139 bits (351), Expect = 1e-31, Method: Composition-based stats. Identities = 42/149 (28%), Positives = 70/149 (46%), Gaps = 12/149 (8%) Query: 9 DLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEW 68 DL R AR+ AV ALY +I + ++ E + F D + + + Sbjct: 36 DLSKYGTRRQARIYAVMALYSYEIN----EKKVNINELFNFEYDDK-------KAANNSF 84 Query: 69 FRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIIS 128 + ++ G ++ Q ID +I ++ W+ SR+ + SI+R + LI +P VII Sbjct: 85 TKELVEGTINNLQKIDSIIEKY-SKNWNISRIQYVDKSIIRMSIYSLIYLKDIPKSVIID 143 Query: 129 EYVCIAHDFFYGDEPKFINAVLDKVSRKE 157 E V IA F D KF+N +LD + ++ Sbjct: 144 EAVEIAKIFGDKDSYKFVNGILDAIQEED 172 >gi|238021694|ref|ZP_04602120.1| hypothetical protein GCWU000324_01597 [Kingella oralis ATCC 51147] gi|237866308|gb|EEP67350.1| hypothetical protein GCWU000324_01597 [Kingella oralis ATCC 51147] Length = 145 Score = 139 bits (351), Expect = 1e-31, Method: Composition-based stats. Identities = 45/155 (29%), Positives = 67/155 (43%), Gaps = 17/155 (10%) Query: 10 LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF 69 +++S RR AR AVQALYQ+ + E+ + + Y H D E F Sbjct: 1 MRVSPRRR-AREFAVQALYQVALNKIPAPEVA-----------QHIRESNDYRHADGELF 48 Query: 70 RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISE 129 I G + ++ +I L + ++ I S+L V EL P VII+E Sbjct: 49 TAIFFGAHNNQREYMQIIRPLLDRDENL--INPIERSVLLVAVHELKAMPETPYPVIINE 106 Query: 130 YVCIAHDFFYGDEPKFINAVLDKVS---RKEEIKR 161 + + F D KFIN +LDK+ R + KR Sbjct: 107 AIEVTKTFGGTDSHKFINGILDKLVAQLRPNDPKR 141 >gi|162455551|ref|YP_001617918.1| N utilization substance protein B [Sorangium cellulosum 'So ce 56'] gi|189035908|sp|A9ET18|NUSB_SORC5 RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|161166133|emb|CAN97438.1| N utilization substance protein B [Sorangium cellulosum 'So ce 56'] Length = 140 Score = 139 bits (351), Expect = 1e-31, Method: Composition-based stats. Identities = 34/141 (24%), Positives = 62/141 (43%), Gaps = 12/141 (8%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 R R AA+Q L+ ++ G S +++ + +T D E + ++ G Sbjct: 4 RSTGREAALQMLFAVEAGGSSAPRVVATF-----WRETPGDPEG------RAYADEVVVG 52 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135 V + +D I + W R+ + ++LR G EL+ VP VI+ E V +A Sbjct: 53 VAEDLAAVDEAIRKA-STNWRLERMARVDRNVLRLGAWELMNRPEVPRAVILDEAVELAK 111 Query: 136 DFFYGDEPKFINAVLDKVSRK 156 + + F+N VLD+++ Sbjct: 112 RYGSEESGAFVNGVLDRIAEN 132 >gi|228992930|ref|ZP_04152854.1| N utilization substance protein B [Bacillus pseudomycoides DSM 12442] gi|228998974|ref|ZP_04158556.1| N utilization substance protein B [Bacillus mycoides Rock3-17] gi|229006513|ref|ZP_04164157.1| N utilization substance protein B [Bacillus mycoides Rock1-4] gi|228754739|gb|EEM04140.1| N utilization substance protein B [Bacillus mycoides Rock1-4] gi|228760591|gb|EEM09555.1| N utilization substance protein B [Bacillus mycoides Rock3-17] gi|228766787|gb|EEM15426.1| N utilization substance protein B [Bacillus pseudomycoides DSM 12442] Length = 120 Score = 139 bits (351), Expect = 1e-31, Method: Composition-based stats. Identities = 37/130 (28%), Positives = 58/130 (44%), Gaps = 14/130 (10%) Query: 24 VQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHI 83 +QALYQ+DI G ++ E E + ++ G ++ K+ I Sbjct: 1 MQALYQMDITGELEPKVAVENTLEEGEETNE-------------FLESLVVGCVEHKEAI 47 Query: 84 DLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEP 143 D I L +KW R+ ++ SILR V E+ +P V I+E + IA F + Sbjct: 48 DEAIRQNL-KKWKLERISIVDRSILRLAVYEMKYMEEIPHNVTINEAIEIAKTFGDEESR 106 Query: 144 KFINAVLDKV 153 +FIN VL + Sbjct: 107 RFINGVLSNI 116 >gi|302866812|ref|YP_003835449.1| transcription antitermination factor NusB [Micromonospora aurantiaca ATCC 27029] gi|315503227|ref|YP_004082114.1| nusb antitermination factor [Micromonospora sp. L5] gi|302569671|gb|ADL45873.1| transcription antitermination factor NusB [Micromonospora aurantiaca ATCC 27029] gi|315409846|gb|ADU07963.1| NusB antitermination factor [Micromonospora sp. L5] Length = 144 Score = 139 bits (350), Expect = 1e-31, Method: Composition-based stats. Identities = 33/139 (23%), Positives = 60/139 (43%), Gaps = 11/139 (7%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 R AR A+ L++ D+ E+++ Y + L + ++ G Sbjct: 12 RRKARKRALDVLFEADLRDRPPVEVLAGYLERIEQPRPDH----------LGYAVGLVEG 61 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135 V ID I+S E W+ R+ ++ ++ R V EL+ + V ISE V +A Sbjct: 62 VAAHLDRIDETIASY-AEGWTLERMPVVDRNLARIAVYELLYVDEIDDAVAISEAVELAR 120 Query: 136 DFFYGDEPKFINAVLDKVS 154 D P+F+N +L +++ Sbjct: 121 QMSTDDSPRFLNGILGRIA 139 >gi|15675648|ref|NP_269822.1| transcription antitermination protein NusB [Streptococcus pyogenes M1 GAS] gi|22095965|sp|Q99Y88|NUSB_STRP1 RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|13622860|gb|AAK34543.1| putative transcriptional terminator [Streptococcus pyogenes M1 GAS] Length = 150 Score = 139 bits (350), Expect = 2e-31, Method: Composition-based stats. Identities = 34/139 (24%), Positives = 67/139 (48%), Gaps = 6/139 (4%) Query: 14 HRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVII 73 + R R A QAL+ I++ E+++ + + D ++ L + + + ++ Sbjct: 7 NSRRDLRERAFQALFNIEMG----AELLAA-SQFAYGYDKVTGEDAQVLELPI-FLLSLV 60 Query: 74 HGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCI 133 GV + K+ +D LIS+ L + WS RL + ++LR G+ E+ P V ++E + + Sbjct: 61 TGVNNHKEELDNLISTHLKKGWSLERLTLTDKTLLRLGLFEIKYFDKTPDRVALNEIIEV 120 Query: 134 AHDFFYGDEPKFINAVLDK 152 + KFIN +L + Sbjct: 121 VKKYSDETSAKFINGLLSQ 139 >gi|317154514|ref|YP_004122562.1| transcription antitermination factor NusB [Desulfovibrio aespoeensis Aspo-2] gi|316944765|gb|ADU63816.1| transcription antitermination factor NusB [Desulfovibrio aespoeensis Aspo-2] Length = 151 Score = 139 bits (350), Expect = 2e-31, Method: Composition-based stats. Identities = 40/154 (25%), Positives = 68/154 (44%), Gaps = 11/154 (7%) Query: 3 IQDNKKDLKLSHRRGIARLAAVQALYQIDIIG-CSTTEIISEYETYRFCADTELDVESVY 61 + NKK + RR + R A Q LY + +I + +E + E + Sbjct: 1 MSGNKKGNRPGIRR-VGRTLAFQVLYGTHFDDPKNPVDIGTAFERNPMVEEQESETA--- 56 Query: 62 LHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSV 121 E+ R ++ GV ID I ++ W F R+ +I SILR + E++ + Sbjct: 57 ----REFARALVLGVDKNLARIDAAIGEH-SQHWKFDRIAVIELSILRLSLYEMLFT-DI 110 Query: 122 PVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSR 155 PV+ I+E + ++ F F+N +LD V+R Sbjct: 111 PVKAAINEAIELSKLFGDEKSRGFVNGILDGVAR 144 >gi|152979861|ref|YP_001354028.1| N utilization substance protein B [Janthinobacterium sp. Marseille] gi|151279938|gb|ABR88348.1| N utilization substance protein B [Janthinobacterium sp. Marseille] Length = 156 Score = 139 bits (350), Expect = 2e-31, Method: Composition-based stats. Identities = 40/166 (24%), Positives = 68/166 (40%), Gaps = 17/166 (10%) Query: 1 MTIQ-DNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVES 59 MT + D+ K R AR A+Q LYQ + I +T + Sbjct: 1 MTQKTDHANPSKNRTPRHRAREFALQGLYQWLLNNEDVRVI-----------ETHIRQAH 49 Query: 60 VYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECH 119 + D E F +++G + + + ++ + + S L + + L G EL Sbjct: 50 GFDKADAEHFDALLYGTVKQVGELRAGLAPLIDRE--ISALSPVEHAALLIGAFELKNHI 107 Query: 120 SVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKV---SRKEEIKRS 162 +P +V+I+E V + F D K++N VLDK +R+ EI Sbjct: 108 EIPYKVVINEAVELTKSFGGIDGHKYVNGVLDKFAVSAREVEINAG 153 >gi|322386860|ref|ZP_08060484.1| N utilization substance protein B [Streptococcus cristatus ATCC 51100] gi|321269142|gb|EFX52078.1| N utilization substance protein B [Streptococcus cristatus ATCC 51100] Length = 145 Score = 139 bits (350), Expect = 2e-31, Method: Composition-based stats. Identities = 38/144 (26%), Positives = 66/144 (45%), Gaps = 9/144 (6%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLE-WFRVIIH 74 R R A QAL ++ G + E RF + D E V++ + ++ Sbjct: 9 RRELRQRAFQALMSLEYEGDAI-------EACRFAYTYDKDEEETDAEVNIPAFLLNLVT 61 Query: 75 GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134 GV+ K+ +D I+ L W+ RL ++ +ILR G+ E+ E P V ++E + ++ Sbjct: 62 GVLQSKEELDKKIAQHLKAGWTVERLTLVEKNILRLGIFEMTEF-DTPERVAVNEAIELS 120 Query: 135 HDFFYGDEPKFINAVLDKVSRKEE 158 F KFIN +L + +E+ Sbjct: 121 KQFSDEKSSKFINGILSQFITEEK 144 >gi|167037510|ref|YP_001665088.1| transcription antitermination protein NusB [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|167040172|ref|YP_001663157.1| transcription antitermination protein NusB [Thermoanaerobacter sp. X514] gi|256752868|ref|ZP_05493706.1| NusB antitermination factor [Thermoanaerobacter ethanolicus CCSD1] gi|300914255|ref|ZP_07131571.1| NusB antitermination factor [Thermoanaerobacter sp. X561] gi|307724509|ref|YP_003904260.1| NusB antitermination factor [Thermoanaerobacter sp. X513] gi|320115924|ref|YP_004186083.1| transcription antitermination factor NusB [Thermoanaerobacter brockii subsp. finnii Ako-1] gi|238687554|sp|B0K0U6|NUSB_THEPX RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|238687696|sp|B0K9D9|NUSB_THEP3 RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|166854412|gb|ABY92821.1| NusB antitermination factor [Thermoanaerobacter sp. X514] gi|166856344|gb|ABY94752.1| NusB antitermination factor [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|256748245|gb|EEU61311.1| NusB antitermination factor [Thermoanaerobacter ethanolicus CCSD1] gi|300889190|gb|EFK84336.1| NusB antitermination factor [Thermoanaerobacter sp. X561] gi|307581570|gb|ADN54969.1| NusB antitermination factor [Thermoanaerobacter sp. X513] gi|319929015|gb|ADV79700.1| transcription antitermination factor NusB [Thermoanaerobacter brockii subsp. finnii Ako-1] Length = 140 Score = 139 bits (350), Expect = 2e-31, Method: Composition-based stats. Identities = 36/148 (24%), Positives = 66/148 (44%), Gaps = 14/148 (9%) Query: 15 RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74 R AR V+ LYQ D+ ++I+ + + + + E+ + Sbjct: 2 NRTEAREWVVKMLYQYDVSRLPISKILENFYKEKDPGEQK------------EYIENTVI 49 Query: 75 GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134 G ++ + ID I ++ W+ +R+ I +ILR + E+ ++PV + I+E V IA Sbjct: 50 GAIEHLEEIDKEIERY-SQNWALNRMPKIDLAILRCSIYEMQYG-NIPVNISINEAVEIA 107 Query: 135 HDFFYGDEPKFINAVLDKVSRKEEIKRS 162 + D P FIN +L R E ++ Sbjct: 108 KKYSTEDSPAFINGLLGAFVRDEGLEEG 135 >gi|268315608|ref|YP_003289327.1| NusB antitermination factor [Rhodothermus marinus DSM 4252] gi|262333142|gb|ACY46939.1| NusB antitermination factor [Rhodothermus marinus DSM 4252] Length = 165 Score = 139 bits (350), Expect = 2e-31, Method: Composition-based stats. Identities = 36/155 (23%), Positives = 65/155 (41%), Gaps = 15/155 (9%) Query: 14 HRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVII 73 H R R +QALY ++ + +I D E L + + Sbjct: 2 HSRREVRERVLQALYAYEVGHDTAEHVIDTVLRPALKDDREA----------LRFATQLF 51 Query: 74 HGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCI 133 ++ + D LI+ + W +R+ +I +LR + EL+ +P +V I+E + + Sbjct: 52 LRTINYSEEADRLIADH-VKNWDLTRIALIDRLLLRMAICELLAFEDIPPKVSINEAIEL 110 Query: 134 AHDFFYGDEPKFINAVLDKVS----RKEEIKRSGC 164 A + +F+N VLD V R+ +K+SG Sbjct: 111 AKKYSTEKSGQFVNGVLDAVVLDLQRQGRLKKSGR 145 >gi|260578799|ref|ZP_05846706.1| N utilization substance protein B family protein (protein NusB) [Corynebacterium jeikeium ATCC 43734] gi|258603097|gb|EEW16367.1| N utilization substance protein B family protein (protein NusB) [Corynebacterium jeikeium ATCC 43734] Length = 205 Score = 139 bits (350), Expect = 2e-31, Method: Composition-based stats. Identities = 36/156 (23%), Positives = 69/156 (44%), Gaps = 7/156 (4%) Query: 11 KLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFR 70 K R AR AV L++ + EI+ E + + ++ E+ + Sbjct: 18 KRHGSRYKARRRAVDILFEAEFRDIDPVEIVEERISLAKDSANQVKPVP-------EYTQ 70 Query: 71 VIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEY 130 I+ GV +D I+ L+ W RL + ++LR EL VP +V + E Sbjct: 71 QIVPGVATNLDALDEAIALHLSSDWQLDRLPAVDRAVLRVAAWELKFNDDVPPQVAVVEG 130 Query: 131 VCIAHDFFYGDEPKFINAVLDKVSRKEEIKRSGCVS 166 V +A ++ + P +I+AVLD +++ +++ ++ Sbjct: 131 VELASEYSHDKAPSYIHAVLDGINKDLQLQADLKIA 166 >gi|27468123|ref|NP_764760.1| transcription antitermination protein NusB [Staphylococcus epidermidis ATCC 12228] gi|57867014|ref|YP_188662.1| transcription antitermination protein NusB [Staphylococcus epidermidis RP62A] gi|251810937|ref|ZP_04825410.1| transcription antitermination protein NusB [Staphylococcus epidermidis BCM-HMP0060] gi|282876054|ref|ZP_06284921.1| transcription antitermination factor NusB [Staphylococcus epidermidis SK135] gi|293366519|ref|ZP_06613196.1| N utilization substance protein B [Staphylococcus epidermidis M23864:W2(grey)] gi|32129816|sp|Q8CP37|NUSB_STAES RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|71153023|sp|Q5HP28|NUSB_STAEQ RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|27315669|gb|AAO04804.1|AE016748_38 transcription termination factor [Staphylococcus epidermidis ATCC 12228] gi|57637672|gb|AAW54460.1| N utilization substance protein B [Staphylococcus epidermidis RP62A] gi|251805617|gb|EES58274.1| transcription antitermination protein NusB [Staphylococcus epidermidis BCM-HMP0060] gi|281295079|gb|EFA87606.1| transcription antitermination factor NusB [Staphylococcus epidermidis SK135] gi|291319288|gb|EFE59657.1| N utilization substance protein B [Staphylococcus epidermidis M23864:W2(grey)] gi|329725378|gb|EGG61861.1| transcription antitermination factor NusB [Staphylococcus epidermidis VCU144] gi|329735255|gb|EGG71547.1| transcription antitermination factor NusB [Staphylococcus epidermidis VCU045] gi|329737366|gb|EGG73620.1| transcription antitermination factor NusB [Staphylococcus epidermidis VCU028] Length = 129 Score = 139 bits (350), Expect = 2e-31, Method: Composition-based stats. Identities = 38/138 (27%), Positives = 61/138 (44%), Gaps = 13/138 (9%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 R AR+ A Q L+Q++I ++ E F D D+ D ++ ++ G Sbjct: 3 RKDARVQAFQTLFQLEIK----ETDLTIQEAIEFIKDDHSDL-------DFDFIYWLVTG 51 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135 V D + +D I L + WS RL ILR E++ P +V+++E V + Sbjct: 52 VKDHQIVLDETIKPHL-KDWSIDRLLKSDRIILRMATFEILHS-DTPKKVVVNEAVELTK 109 Query: 136 DFFYGDEPKFINAVLDKV 153 F D KF+N VL + Sbjct: 110 QFSDDDHYKFVNGVLSNI 127 >gi|110803071|ref|YP_699107.1| transcription antitermination protein NusB [Clostridium perfringens SM101] gi|119390760|sp|Q0SS00|NUSB_CLOPS RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|110683572|gb|ABG86942.1| N utilization substance protein B [Clostridium perfringens SM101] Length = 135 Score = 139 bits (350), Expect = 2e-31, Method: Composition-based stats. Identities = 37/142 (26%), Positives = 65/142 (45%), Gaps = 10/142 (7%) Query: 15 RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74 R +R +Q YQ++I + E + + + +L DL + + + Sbjct: 2 NRVKSREYLLQLAYQMEITSETALETFNSFMENEDISKDDL---------DLAYIKSGLL 52 Query: 75 GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134 G+ + K+ +D LI S L + W +R+ + SILR E++ VP +V I+E + + Sbjct: 53 GIEENKEKLDSLIESQLVK-WKLNRISKVNLSILRISTYEILFAEDVPGKVSINEAIELC 111 Query: 135 HDFFYGDEPKFINAVLDKVSRK 156 + FIN VLDKV + Sbjct: 112 KKYSDNKSVSFINGVLDKVYKN 133 >gi|289578288|ref|YP_003476915.1| NusB antitermination factor [Thermoanaerobacter italicus Ab9] gi|297544568|ref|YP_003676870.1| NusB antitermination factor [Thermoanaerobacter mathranii subsp. mathranii str. A3] gi|289528001|gb|ADD02353.1| NusB antitermination factor [Thermoanaerobacter italicus Ab9] gi|296842343|gb|ADH60859.1| NusB antitermination factor [Thermoanaerobacter mathranii subsp. mathranii str. A3] Length = 140 Score = 139 bits (350), Expect = 2e-31, Method: Composition-based stats. Identities = 37/146 (25%), Positives = 65/146 (44%), Gaps = 14/146 (9%) Query: 15 RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74 R AR V+ LYQ DI ++I + + D + E+ + Sbjct: 2 NRTEAREWVVKMLYQYDISRFPISKIFDNFYKEKDPGDQK------------EYIENTVK 49 Query: 75 GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134 G ++ + ID I ++ W+ +R+ I +ILR + E+I ++PV + I+E V IA Sbjct: 50 GAIEHLEEIDKEIEKY-SQNWALNRMPRIDLAILRCSIYEMIYG-NIPVNISINEAVEIA 107 Query: 135 HDFFYGDEPKFINAVLDKVSRKEEIK 160 + D FIN +L R + ++ Sbjct: 108 KKYSTEDSHVFINGLLGAFVRDKGLE 133 >gi|242242793|ref|ZP_04797238.1| transcription antitermination protein NusB [Staphylococcus epidermidis W23144] gi|242233929|gb|EES36241.1| transcription antitermination protein NusB [Staphylococcus epidermidis W23144] gi|319400860|gb|EFV89079.1| transcription antitermination factor NusB [Staphylococcus epidermidis FRI909] Length = 129 Score = 139 bits (350), Expect = 2e-31, Method: Composition-based stats. Identities = 38/138 (27%), Positives = 61/138 (44%), Gaps = 13/138 (9%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 R AR+ A Q L+Q++I ++ E F D D+ D ++ ++ G Sbjct: 3 RKDARIQAFQTLFQLEIK----ETDLTIQEAIEFIKDDHSDL-------DFDFIYWLVTG 51 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135 V D + +D I L + WS RL ILR E++ P +V+++E V + Sbjct: 52 VKDHQIVLDDTIKPHL-KDWSIDRLLKSDRIILRMATFEILHS-DTPKKVVVNEAVELTK 109 Query: 136 DFFYGDEPKFINAVLDKV 153 F D KF+N VL + Sbjct: 110 QFSDDDHYKFVNGVLSNI 127 >gi|227530526|ref|ZP_03960575.1| transcription antitermination protein NusB [Lactobacillus vaginalis ATCC 49540] gi|227349532|gb|EEJ39823.1| transcription antitermination protein NusB [Lactobacillus vaginalis ATCC 49540] Length = 136 Score = 139 bits (350), Expect = 2e-31, Method: Composition-based stats. Identities = 34/149 (22%), Positives = 55/149 (36%), Gaps = 13/149 (8%) Query: 12 LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71 + R R A Q L+ +T I E + + + Sbjct: 1 MMPNRHAIREEAFQILFAKQSNPDATLTDIYESL-------------PSHADKIPAYLQT 47 Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131 ++ GV + ++ +D I+ L W +RL ILR + E+ VP V I+E + Sbjct: 48 LVEGVSEHQEKLDEQITQLLASGWEINRLAQTDLVILRLALYEIQFVDEVPTVVAINEAL 107 Query: 132 CIAHDFFYGDEPKFINAVLDKVSRKEEIK 160 +A + KFIN L K R+ E Sbjct: 108 ELAKTYSNDKSRKFINGALGKFERQLESN 136 >gi|330466963|ref|YP_004404706.1| nusb antitermination factor [Verrucosispora maris AB-18-032] gi|328809934|gb|AEB44106.1| nusb antitermination factor [Verrucosispora maris AB-18-032] Length = 144 Score = 138 bits (349), Expect = 2e-31, Method: Composition-based stats. Identities = 35/139 (25%), Positives = 61/139 (43%), Gaps = 11/139 (7%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 R AR A+ L++ D+ E+++ Y + L + ++ G Sbjct: 12 RRKARKRALDVLFEADLRDRPPVEVLAGYIERIEKPRPDH----------LGYAVGLVEG 61 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135 V ID LISS E W+ R+ ++ ++ R V EL+ + V ISE V +A Sbjct: 62 VAGHLDRIDELISSY-AEGWTLDRMPVVDRNLARIAVYELLYVDEIDDAVAISEAVELAR 120 Query: 136 DFFYGDEPKFINAVLDKVS 154 D P+F+N +L +++ Sbjct: 121 QMSTDDSPRFLNGLLGRIA 139 >gi|326201953|ref|ZP_08191823.1| NusB antitermination factor [Clostridium papyrosolvens DSM 2782] gi|325987748|gb|EGD48574.1| NusB antitermination factor [Clostridium papyrosolvens DSM 2782] Length = 145 Score = 138 bits (349), Expect = 2e-31, Method: Composition-based stats. Identities = 40/142 (28%), Positives = 67/142 (47%), Gaps = 12/142 (8%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 R +R +A++ LYQ++I E I+ + D E+ + I+ G Sbjct: 3 RRASRESAMKLLYQLEIQKTDRDEQINMALE-----------DESLTENDREYIKGIVDG 51 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135 V D+ +D +I T W +RL I SILR G+ E++ +P V ++E V +A Sbjct: 52 VFDKTPVLDGIIEKKAT-GWKINRLSKIDLSILRIGIYEILYRDDIPFSVSVNEAVELAK 110 Query: 136 DFFYGDEPKFINAVLDKVSRKE 157 + D F+N +L KVS+ + Sbjct: 111 KYSNEDAGAFVNGLLAKVSKSD 132 >gi|291456359|ref|ZP_06595749.1| transcription antitermination factor NusB [Bifidobacterium breve DSM 20213] gi|291381636|gb|EFE89154.1| transcription antitermination factor NusB [Bifidobacterium breve DSM 20213] Length = 176 Score = 138 bits (349), Expect = 2e-31, Method: Composition-based stats. Identities = 35/150 (23%), Positives = 62/150 (41%), Gaps = 12/150 (8%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 R AR A+ LY+ D G ++ E + D + I+ G Sbjct: 3 RSTARKRALNTLYEADEKGQDILSLLDERIAHPGAQTPLPD-----------YAIDIVKG 51 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135 V + ++ ID+ + + W R+ ++ +ILR E++ VP +V I E + +A Sbjct: 52 VAEHRRQIDMTLDDH-STGWKVRRMGVVDRNILRIAAWEILFNDEVPDKVAIDEALALAK 110 Query: 136 DFFYGDEPKFINAVLDKVSRKEEIKRSGCV 165 D P FI+ +L V + + +G V Sbjct: 111 TLCDDDSPAFIHGLLSAVCNAKNTEPAGSV 140 >gi|222099929|ref|YP_002534497.1| N utilization substance protein B like protein [Thermotoga neapolitana DSM 4359] gi|221572319|gb|ACM23131.1| N utilization substance protein B like protein [Thermotoga neapolitana DSM 4359] Length = 135 Score = 138 bits (349), Expect = 2e-31, Method: Composition-based stats. Identities = 41/144 (28%), Positives = 68/144 (47%), Gaps = 14/144 (9%) Query: 20 RLAAVQALYQIDII-GCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMD 78 RLA +AL+Q + +I+ E + + D R I + + Sbjct: 2 RLAVFKALFQHEFRKDEDLEQILEEILDNSYDEKAKKD------------ARRYIRNIKE 49 Query: 79 RKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFF 138 Q ID LIS L E+W+ RL + +ILR G EL+ +P+EV I+E + IA + Sbjct: 50 HLQTIDDLISRYL-ERWTIDRLSAVDRNILRLGTYELLYEKDIPIEVTINEAIEIAKRYG 108 Query: 139 YGDEPKFINAVLDKVSRKEEIKRS 162 + KF+N +LD+++++ K Sbjct: 109 TENSGKFVNGILDRIAKENAPKEK 132 >gi|255658168|ref|ZP_05403577.1| transcription antitermination factor NusB [Mitsuokella multacida DSM 20544] gi|260849476|gb|EEX69483.1| transcription antitermination factor NusB [Mitsuokella multacida DSM 20544] Length = 143 Score = 138 bits (349), Expect = 2e-31, Method: Composition-based stats. Identities = 31/145 (21%), Positives = 61/145 (42%), Gaps = 6/145 (4%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 R AR A+QAL+Q+D+ + + E DT L D + ++HG Sbjct: 3 RRQAREVALQALFQLDLNPAESAD--QEEMQETLAIDTALGEAEAMSAHDRAFVAQLVHG 60 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHS--VPVEVIISEYVCI 133 + ID I++ + +W R+ + ++ R E+ P + I+E V + Sbjct: 61 TRANLEAIDAQIAAN-SREWKVERMAAVDRNLTRMATYEMCFAEEKLTP-NIAINEAVEL 118 Query: 134 AHDFFYGDEPKFINAVLDKVSRKEE 158 A + D +++N +L + + + Sbjct: 119 AKKYGTDDSSRYVNGILGAIMKSAQ 143 >gi|229815218|ref|ZP_04445554.1| hypothetical protein COLINT_02264 [Collinsella intestinalis DSM 13280] gi|229809228|gb|EEP44994.1| hypothetical protein COLINT_02264 [Collinsella intestinalis DSM 13280] Length = 216 Score = 138 bits (349), Expect = 2e-31, Method: Composition-based stats. Identities = 36/154 (23%), Positives = 67/154 (43%), Gaps = 16/154 (10%) Query: 9 DLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEW 68 LK++ R +AR A+Q L+Q ++ S ++++ D L + + Sbjct: 3 SLKVNRGRTLARSQALQILFQSEMRKVSVEDVLA--------GDYTLSKGPL-----APY 49 Query: 69 FRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIEC--HSVPVEVI 126 I GV + ID + ++ W+ R+ ++LRA V EL ++ V+ Sbjct: 50 AIEIARGVSANRDRIDSAL-RAVSANWTLERMPGADRNLLRAAVYELYFQVADTLDAAVV 108 Query: 127 ISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIK 160 I+E V IA + + F+N VL ++ R + Sbjct: 109 INEAVEIAKAYGTDESAGFVNGVLGRIVRDRHLP 142 >gi|189485423|ref|YP_001956364.1| transcription antitermination factor NusB [uncultured Termite group 1 bacterium phylotype Rs-D17] gi|170287382|dbj|BAG13903.1| transcription antitermination factor NusB [uncultured Termite group 1 bacterium phylotype Rs-D17] Length = 142 Score = 138 bits (349), Expect = 2e-31, Method: Composition-based stats. Identities = 35/140 (25%), Positives = 60/140 (42%), Gaps = 12/140 (8%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 R AR ++ LY +D I + + Y + + G Sbjct: 4 RRKARECSLHMLYAVDNCNVPIESIYNSFAVY-----------FPKGEAYRMFALDLFKG 52 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135 V D K+ +D LI C + W R+ + +I+R E++ ++P+ VII E V I+ Sbjct: 53 VCDNKEDLDSLIKQC-AKNWEIERMAAVDRNIIRLATYEIMATTNIPIRVIIDEAVEISK 111 Query: 136 DFFYGDEPKFINAVLDKVSR 155 + D KF+N +LDK+ + Sbjct: 112 KYSTKDSSKFVNGILDKLKK 131 >gi|331697319|ref|YP_004333558.1| NusB antitermination factor [Pseudonocardia dioxanivorans CB1190] gi|326952008|gb|AEA25705.1| NusB antitermination factor [Pseudonocardia dioxanivorans CB1190] Length = 139 Score = 138 bits (349), Expect = 2e-31, Method: Composition-based stats. Identities = 33/141 (23%), Positives = 66/141 (46%), Gaps = 13/141 (9%) Query: 14 HRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVII 73 R AR A+ L++ + G E++ E+ ++ +++ Sbjct: 2 RARTKARKRALDILFESEARGDDPLEVLRNRR------------ETDDAPPVSDYAALLV 49 Query: 74 HGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCI 133 GV++ ++ ID L++ E W+ +R+ + ++LR GV EL+ + V I+E V + Sbjct: 50 QGVVEHRERIDQLLAEH-AEGWTVARMPAVDRTLLRIGVFELLWVDEIDDPVAITEAVEL 108 Query: 134 AHDFFYGDEPKFINAVLDKVS 154 A D P+F+N VL +++ Sbjct: 109 ARTLSTDDSPRFLNGVLGRIA 129 >gi|300854298|ref|YP_003779282.1| nusB-like protein [Clostridium ljungdahlii DSM 13528] gi|300434413|gb|ADK14180.1| nusB-like protein [Clostridium ljungdahlii DSM 13528] Length = 158 Score = 138 bits (349), Expect = 2e-31, Method: Composition-based stats. Identities = 33/158 (20%), Positives = 67/158 (42%), Gaps = 11/158 (6%) Query: 15 RRGIARLAAVQALYQIDIIGCSTTEIISEYET--YRFCADTELDVESV--------YLHV 64 R +R ++ L+++ I +++ E + E D +V Sbjct: 2 NRKKSRELIMKLLFEMSINREDFRSVLANLEDNLEKKIESKETDGAEEVYSENIDKLKNV 61 Query: 65 DLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVE 124 D+E+ + ++ G+ + K +D I L W+ +RL + +ILR E + +P + Sbjct: 62 DMEYVKRVVKGIEENKDSLDKEIEKYL-RNWTLNRLPKVDAAILRICTYEFLYEQDIPEK 120 Query: 125 VIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRS 162 V I+E + +A + FIN VL + + + I + Sbjct: 121 VSINEAIELAKKYSSEKSAPFINGVLGNMIKDKSISKQ 158 >gi|262283503|ref|ZP_06061269.1| transcription antitermination protein NusB [Streptococcus sp. 2_1_36FAA] gi|262260994|gb|EEY79694.1| transcription antitermination protein NusB [Streptococcus sp. 2_1_36FAA] Length = 141 Score = 138 bits (349), Expect = 2e-31, Method: Composition-based stats. Identities = 39/142 (27%), Positives = 64/142 (45%), Gaps = 9/142 (6%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 R R A QAL ++ E I E + + D E + + + +++G Sbjct: 9 RRDLRERAFQALMSLEY-----DEDIVEACRFAYLHDKEEEEQVELPI----FLLNLVNG 59 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135 VM K +D I+ L W+ RL ++ +ILR G+ EL+E P V ++E + +A Sbjct: 60 VMQSKSVLDDKITQYLKAGWTLDRLTLVEKNILRLGLYELLEYDETPQLVAVNEAIELAK 119 Query: 136 DFFYGDEPKFINAVLDKVSRKE 157 F KFIN +L + +E Sbjct: 120 KFSDEKSSKFINGILSQFVTEE 141 >gi|157364365|ref|YP_001471132.1| transcription antitermination protein NusB [Thermotoga lettingae TMO] gi|254772664|sp|A8F7D4|NUSB_THELT RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|157314969|gb|ABV34068.1| NusB antitermination factor [Thermotoga lettingae TMO] Length = 140 Score = 138 bits (349), Expect = 2e-31, Method: Composition-based stats. Identities = 41/141 (29%), Positives = 63/141 (44%), Gaps = 13/141 (9%) Query: 15 RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74 RR R + ++Q + S ++ + +S + D + Sbjct: 3 RRSKMRDLVFKVIFQNEFRNDSIETVLEDILHIS---------KSGLMKAD---ITRYVK 50 Query: 75 GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134 G+ + ID IS CL E WS RL ++ SILR EL+ VP+EV + E V IA Sbjct: 51 GIYENLPSIDEKISLCL-ENWSLQRLSLVDRSILRLATYELLYESDVPIEVTLDEAVEIA 109 Query: 135 HDFFYGDEPKFINAVLDKVSR 155 + + KF+N VLDKV++ Sbjct: 110 KKYGTENSSKFVNGVLDKVAK 130 >gi|225619886|ref|YP_002721143.1| transcription antitermination protein NusB [Brachyspira hyodysenteriae WA1] gi|225214705|gb|ACN83439.1| transcription antitermination protein NusB [Brachyspira hyodysenteriae WA1] Length = 181 Score = 138 bits (348), Expect = 3e-31, Method: Composition-based stats. Identities = 46/157 (29%), Positives = 73/157 (46%), Gaps = 13/157 (8%) Query: 3 IQDNKKDLKLSH--RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESV 60 ++N KDL LS R AR+ AV +LY +I E I+E ++ D + Sbjct: 34 NKENIKDLDLSSYGARRQARIYAVMSLYSYEINDR--KETINEILSF--------DYDKK 83 Query: 61 YLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHS 120 E+ R ++ G ++ + ID LI + W R+ + SI+R + LI Sbjct: 84 IPENIFEFTRTLVEGTINNLERIDNLIEKY-SNNWDIKRIQYVDKSIIRMSIYSLIFLKD 142 Query: 121 VPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKE 157 +P V+I E V I+ F D KF+N +LD + K+ Sbjct: 143 IPKSVVIDEAVEISKIFSDKDSYKFVNGILDGIQEKD 179 >gi|119716645|ref|YP_923610.1| transcription antitermination factor NusB [Nocardioides sp. JS614] gi|166215705|sp|A1SJD8|NUSB_NOCSJ RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|119537306|gb|ABL81923.1| NusB antitermination factor [Nocardioides sp. JS614] Length = 135 Score = 138 bits (348), Expect = 3e-31, Method: Composition-based stats. Identities = 36/142 (25%), Positives = 65/142 (45%), Gaps = 14/142 (9%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 R AR A+ L+ D+ G + R A+ E ++ ++ G Sbjct: 4 RSKARKRALDVLFASDVRGEDAVAALD-----RAIAEGEGPTN--------DYTATLVRG 50 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135 V++ + ID L+SS + W+ R+ + ++LR GV EL+ VP V +SE + + Sbjct: 51 VVEHQARIDELLSSY-SHGWALDRMPAVDRNVLRLGVWELLYADDVPDAVAVSEAMALVT 109 Query: 136 DFFYGDEPKFINAVLDKVSRKE 157 D + P+F+N +L + R + Sbjct: 110 DLSTDESPQFVNGILGSIVRNK 131 >gi|270293308|ref|ZP_06199517.1| N utilization substance protein B [Streptococcus sp. M143] gi|270278157|gb|EFA24005.1| N utilization substance protein B [Streptococcus sp. M143] Length = 146 Score = 138 bits (348), Expect = 3e-31, Method: Composition-based stats. Identities = 40/158 (25%), Positives = 68/158 (43%), Gaps = 12/158 (7%) Query: 1 MTIQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESV 60 MT + L RR + R A QAL ++ G RF + + V Sbjct: 1 MTRTSSMTSPLLESRREL-RKCAFQALMSLEF-GTDVET------ACRFAYTHDREDTDV 52 Query: 61 YLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHS 120 L + ++ GV +K+ +D I+ L W+ RL ++ ++LR GV E+ Sbjct: 53 QLPA---FLTELVSGVQAKKEELDKQITQHLKAGWTIERLTLVERNLLRLGVFEITSF-D 108 Query: 121 VPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEE 158 P V ++E + +A DF +FIN +L + +E+ Sbjct: 109 TPQLVAVNEAIELAKDFSDQKSARFINGLLSQFVTEEQ 146 >gi|304312173|ref|YP_003811771.1| N utilization substance protein B, transcription termination factor [gamma proteobacterium HdN1] gi|301797906|emb|CBL46128.1| N utilization substance protein B, transcription termination factor [gamma proteobacterium HdN1] Length = 136 Score = 138 bits (348), Expect = 3e-31, Method: Composition-based stats. Identities = 33/125 (26%), Positives = 61/125 (48%), Gaps = 13/125 (10%) Query: 32 IIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCL 91 + G S + I +++ T ++ D+ +F ++HGV +D IS L Sbjct: 1 MTGDSLSSIEAQFRT-----------DNDMRKTDVAYFHELLHGVPSCVADLDSAISPFL 49 Query: 92 TEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLD 151 + + LD + +ILR EL++ +P V I+E + +A F + K++N VLD Sbjct: 50 DRE--ITELDQVERAILRLATYELLKRQDIPYRVAINEGIELAKTFGATESHKYVNGVLD 107 Query: 152 KVSRK 156 KV+++ Sbjct: 108 KVAQR 112 >gi|187917985|ref|YP_001883548.1| transcription antitermination protein NusB [Borrelia hermsii DAH] gi|119860833|gb|AAX16628.1| N utilization substance protein B [Borrelia hermsii DAH] Length = 146 Score = 138 bits (348), Expect = 3e-31, Method: Composition-based stats. Identities = 42/144 (29%), Positives = 68/144 (47%), Gaps = 10/144 (6%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 R AR+ A Q +Y ID+ + I + D E D++ ++ V+++G Sbjct: 6 RHKARVLAFQKIYSIDVNCKAKDNIYDIFGLEDHGVDLEEDLKL--------FYSVLVNG 57 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECH-SVPVEVIISEYVCIA 134 D + ID LIS ++ W R+D + +ILR V L + VP VII E + IA Sbjct: 58 TCDNLESIDKLISD-ISLNWRLDRMDKVDLAILRVSVYSLKFQNLDVPKRVIIDEAILIA 116 Query: 135 HDFFYGDEPKFINAVLDKVSRKEE 158 + + KF+N +LD + + E Sbjct: 117 KKYGSKNSYKFVNGILDALLKDME 140 >gi|323340820|ref|ZP_08081072.1| transcription antitermination factor NusB [Lactobacillus ruminis ATCC 25644] gi|323091943|gb|EFZ34563.1| transcription antitermination factor NusB [Lactobacillus ruminis ATCC 25644] Length = 128 Score = 138 bits (348), Expect = 3e-31, Method: Composition-based stats. Identities = 32/138 (23%), Positives = 57/138 (41%), Gaps = 13/138 (9%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 R R A Q L+ + + + ++ D E E+ ++ G Sbjct: 3 RHDIRRLAFQTLFAM---SSNPDAVATDVYQTVLGKDIEAP----------EYLTQLVDG 49 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135 V + ID IS+ L + W SRL+ ++R V E+ VP +V ++E + ++ Sbjct: 50 VNEHLAEIDEAISAHLKKGWPISRLNKTDLILMRIAVYEIKFVEEVPNKVSLNEALELSK 109 Query: 136 DFFYGDEPKFINAVLDKV 153 +F +FIN VL + Sbjct: 110 EFSDETSRRFINGVLSNL 127 >gi|227363166|ref|ZP_03847300.1| transcription antitermination protein NusB [Lactobacillus reuteri MM2-3] gi|227071772|gb|EEI10061.1| transcription antitermination protein NusB [Lactobacillus reuteri MM2-3] Length = 141 Score = 138 bits (348), Expect = 3e-31, Method: Composition-based stats. Identities = 35/151 (23%), Positives = 62/151 (41%), Gaps = 12/151 (7%) Query: 11 KLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFR 70 K+S R + R A Q L+ + S +I + YE + ++ + Sbjct: 3 KMSLNRHMIREEAFQVLFALQ--SDSEADIQTVYEAIPHHDEKQIP----------PYLL 50 Query: 71 VIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEY 130 +++GV + + +D I+ L W+ +RL ILR + E+ +VP V I+E Sbjct: 51 TLVNGVREHQDQLDEQINDLLASGWTINRLAKPDLVILRLALFEIQYAENVPTVVAINEA 110 Query: 131 VCIAHDFFYGDEPKFINAVLDKVSRKEEIKR 161 + + F KFIN L K ++ Sbjct: 111 LELTKTFSSDKSRKFINGALGKFEKQVNENN 141 >gi|225023290|ref|ZP_03712482.1| hypothetical protein EIKCOROL_00142 [Eikenella corrodens ATCC 23834] gi|224943935|gb|EEG25144.1| hypothetical protein EIKCOROL_00142 [Eikenella corrodens ATCC 23834] Length = 145 Score = 138 bits (348), Expect = 3e-31, Method: Composition-based stats. Identities = 44/158 (27%), Positives = 67/158 (42%), Gaps = 18/158 (11%) Query: 10 LKLSHR--RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLE 67 +K +R R AR AVQALYQ + E+ + + D E Sbjct: 1 MKPKNRTPRRRAREFAVQALYQAALNQLPDAEVA-----------KNIRENEYFAKADNE 49 Query: 68 WFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVII 127 F I GV +++ + +I L L I C++L A EL + P VII Sbjct: 50 LFTAIFFGVQAKRRELMQIIRPLLDRDEK--DLSPIECAVLLAAAFELRDMPETPYPVII 107 Query: 128 SEYVCIAHDFFYGDEPKFINAVLDKVS---RKEEIKRS 162 +E + + F D KF+N +LDK++ R + KR+ Sbjct: 108 NEAIEVTKTFGGIDGHKFVNGILDKLAAELRPNDPKRA 145 >gi|168705385|ref|ZP_02737662.1| transcription antitermination protein NusB [Gemmata obscuriglobus UQM 2246] Length = 139 Score = 138 bits (348), Expect = 3e-31, Method: Composition-based stats. Identities = 40/150 (26%), Positives = 68/150 (45%), Gaps = 13/150 (8%) Query: 22 AAVQALYQIDIIGCSTT-EIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRK 80 +Q L+Q D + I ++ R D E+ + + GV RK Sbjct: 1 MVLQLLFQWDQNPTKVPRKAIQQFARDRLLGDAEMST----------YALSLYDGVAGRK 50 Query: 81 QHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIE-CHSVPVEVIISEYVCIAHDFFY 139 ID + S T W +R+ + ++LR G EL+ P+EV+I+E + +A F Sbjct: 51 DAIDEALKSAAT-NWRLTRMTPVDRNVLRLGAFELLFDAAPQPLEVVINEAIELAKRFGS 109 Query: 140 GDEPKFINAVLDKVSRKEEIKRSGCVSAIT 169 D P F+N VLD+V + + +++G S + Sbjct: 110 EDSPAFVNGVLDRVGKMRDERKAGAGSGAS 139 >gi|227515668|ref|ZP_03945717.1| transcription antitermination protein NusB [Lactobacillus fermentum ATCC 14931] gi|260663543|ref|ZP_05864433.1| transcription antitermination factor NusB [Lactobacillus fermentum 28-3-CHN] gi|227085971|gb|EEI21283.1| transcription antitermination protein NusB [Lactobacillus fermentum ATCC 14931] gi|260552084|gb|EEX25137.1| transcription antitermination factor NusB [Lactobacillus fermentum 28-3-CHN] Length = 139 Score = 138 bits (348), Expect = 3e-31, Method: Composition-based stats. Identities = 34/142 (23%), Positives = 53/142 (37%), Gaps = 11/142 (7%) Query: 12 LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71 ++ +R R A Q L+ + S E+ E + + Sbjct: 1 MTFKRRKIREVAFQTLFAM----ASDPEVDREQLYKELLPLAPQEEVP-------AYLEE 49 Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131 ++ GV + + D I L WS SR++ ILR + E+ VPV V I E + Sbjct: 50 LVTGVSEHQAEFDQEIEGSLAAGWSLSRVEKPNLIILRLALYEMKYVDDVPVAVAIDEAL 109 Query: 132 CIAHDFFYGDEPKFINAVLDKV 153 + F KFIN VL + Sbjct: 110 EMTKKFSDDKSRKFINGVLGHI 131 >gi|197301786|ref|ZP_03166856.1| hypothetical protein RUMLAC_00512 [Ruminococcus lactaris ATCC 29176] gi|197299226|gb|EDY33756.1| hypothetical protein RUMLAC_00512 [Ruminococcus lactaris ATCC 29176] Length = 140 Score = 138 bits (348), Expect = 3e-31, Method: Composition-based stats. Identities = 40/143 (27%), Positives = 61/143 (42%), Gaps = 10/143 (6%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 R R + L+Q + E + E+ Y F D ++ + Sbjct: 3 RTELREHIFKLLFQEEFN---REEDMQEHLKYYFMT------LENAADKDKDYIQEKYEA 53 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135 V ID LI+ + W +R++ + +ILR V E+ VPV V I+E V +A Sbjct: 54 VAGHIAEIDELINQY-AKGWKTTRMNKVDLAILRLAVYEMKWDEEVPVGVAINEAVELAK 112 Query: 136 DFFYGDEPKFINAVLDKVSRKEE 158 F GD P FIN VL K++R + Sbjct: 113 RFSGGDSPSFINGVLGKIARSAD 135 >gi|169831182|ref|YP_001717164.1| NusB antitermination factor [Candidatus Desulforudis audaxviator MP104C] gi|238688239|sp|B1I3I9|NUSB_DESAP RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|169638026|gb|ACA59532.1| NusB antitermination factor [Candidatus Desulforudis audaxviator MP104C] Length = 138 Score = 138 bits (348), Expect = 3e-31, Method: Composition-based stats. Identities = 34/148 (22%), Positives = 68/148 (45%), Gaps = 12/148 (8%) Query: 15 RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74 +R R A+Q L+Q ++ S + F +TE D + + ++ Sbjct: 2 KRRRQRETALQVLFQAEVARISGERAFARTMEL-FGLNTE----------DFAYAQELVD 50 Query: 75 GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134 GV+ + +D +IS ++ +W R+ + +I+R + E+ +P+ V ++E + +A Sbjct: 51 GVLAKVDRLDRIISR-VSHEWRLERMANVDRNIIRLALYEVFFRDDIPINVAVNEALELA 109 Query: 135 HDFFYGDEPKFINAVLDKVSRKEEIKRS 162 F D +F+N +L KV + E R Sbjct: 110 RTFGTEDSRRFVNGILGKVVEEPEEYRP 137 >gi|187779509|ref|ZP_02995982.1| hypothetical protein CLOSPO_03105 [Clostridium sporogenes ATCC 15579] gi|187773134|gb|EDU36936.1| hypothetical protein CLOSPO_03105 [Clostridium sporogenes ATCC 15579] Length = 143 Score = 137 bits (347), Expect = 3e-31, Method: Composition-based stats. Identities = 41/142 (28%), Positives = 67/142 (47%), Gaps = 4/142 (2%) Query: 15 RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCAD--TELDVESVYLH-VDLEWFRV 71 R +R A++ L+Q + + + + R + E D ESV L VD+++ + Sbjct: 2 NRRKSREVAMRLLFQTTLNEENLEVALENLKDVRESEESAKEKDYESVDLKDVDIDYVKR 61 Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131 II G+ + K+ ID I L + W RL + SILR EL +P +V ++E + Sbjct: 62 IIKGIEENKEEIDEKIKGNL-KNWKIERLSKVDLSILRLCTYELKFEEDIPSKVSVNEAI 120 Query: 132 CIAHDFFYGDEPKFINAVLDKV 153 +A + FIN VL K+ Sbjct: 121 ELAKKYSGEKAATFINGVLGKM 142 >gi|15902434|ref|NP_357984.1| transcription antitermination protein NusB [Streptococcus pneumoniae R6] gi|183603887|ref|ZP_02722699.2| transcription antitermination factor NusB [Streptococcus pneumoniae MLV-016] gi|15457952|gb|AAK99194.1| Transcription termination protein [Streptococcus pneumoniae R6] gi|183577498|gb|EDT98026.1| transcription antitermination factor NusB [Streptococcus pneumoniae MLV-016] Length = 146 Score = 137 bits (347), Expect = 3e-31, Method: Composition-based stats. Identities = 40/158 (25%), Positives = 68/158 (43%), Gaps = 12/158 (7%) Query: 1 MTIQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESV 60 MT + L RR + R A QAL ++ G RF + + V Sbjct: 1 MTRTSSMTSPLLESRRQL-RKCAFQALMSLEF-GTDVET------ACRFAYTHDREDTDV 52 Query: 61 YLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHS 120 L + ++ GV +K+ +D I+ L W+ RL ++ ++LR GV E+ Sbjct: 53 QLPA---FLIDLVSGVQAKKEELDKQITQHLKAGWTIERLTLVERNLLRLGVFEITSF-D 108 Query: 121 VPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEE 158 P V ++E + +A DF +FIN +L + +E+ Sbjct: 109 TPQLVAVNEAIELAKDFSDQKSARFINGLLSQFVTEEQ 146 >gi|73662539|ref|YP_301320.1| transcription antitermination protein NusB [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] gi|119390831|sp|Q49XW9|NUSB_STAS1 RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|72495054|dbj|BAE18375.1| putative antitermination protein [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] Length = 128 Score = 137 bits (347), Expect = 4e-31, Method: Composition-based stats. Identities = 41/138 (29%), Positives = 63/138 (45%), Gaps = 13/138 (9%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 R +R A Q L+Q+++ ++ E F D D+E E+ ++ G Sbjct: 3 RKESRTQAFQTLFQLEMKNSD----LTIEEAISFIKDDNPDLE-------FEFISWLVTG 51 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135 V D + +D I L + W+ +RL ILR E++ S P +VII+E V +A Sbjct: 52 VKDHEVVLDEKIQPHL-KDWTLARLLKSDRIILRMSTFEMLHS-STPQKVIINEAVELAK 109 Query: 136 DFFYGDEPKFINAVLDKV 153 F D KFIN VL + Sbjct: 110 QFSDDDHYKFINGVLSNI 127 >gi|220929324|ref|YP_002506233.1| NusB antitermination factor [Clostridium cellulolyticum H10] gi|254772626|sp|B8I3B0|NUSB_CLOCE RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|219999652|gb|ACL76253.1| NusB antitermination factor [Clostridium cellulolyticum H10] Length = 145 Score = 137 bits (347), Expect = 4e-31, Method: Composition-based stats. Identities = 38/140 (27%), Positives = 65/140 (46%), Gaps = 12/140 (8%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 R +R A++ LYQ++I E I+ + D E+ + I+ G Sbjct: 3 RRASRETAMKLLYQLEIQKTDRDEQINMALE-----------DESLTKNDREYIKGIVDG 51 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135 V ++ +D +I T W +RL I S+LR G+ E++ +P V ++E V +A Sbjct: 52 VYEKTPVLDGIIEKKAT-GWKINRLSKIDLSVLRIGIYEILYRDDIPFSVSVNEAVELAK 110 Query: 136 DFFYGDEPKFINAVLDKVSR 155 + D F+N +L KVS+ Sbjct: 111 KYSNEDAGAFVNGLLAKVSK 130 >gi|312195541|ref|YP_004015602.1| NusB antitermination factor [Frankia sp. EuI1c] gi|311226877|gb|ADP79732.1| NusB antitermination factor [Frankia sp. EuI1c] Length = 135 Score = 137 bits (347), Expect = 4e-31, Method: Composition-based stats. Identities = 34/138 (24%), Positives = 54/138 (39%), Gaps = 14/138 (10%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 R +R A+ LY+ D+ S EI++ E + ++ Sbjct: 4 RSKSRKRALDILYEADLRSTSPLEILAARSVQNDPPVNE-------------YTSGLVRD 50 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135 V + ID I E W+ R+ + +ILR VLE++ VP V I E V +A Sbjct: 51 VTEHLGRIDGFIGEH-AEGWTLERMPAVDRNILRIAVLEMMWRDDVPDRVAIDEAVELAK 109 Query: 136 DFFYGDEPKFINAVLDKV 153 P F+N +L + Sbjct: 110 SVSTDRSPAFVNGLLASL 127 >gi|187477080|ref|YP_785104.1| transcription antitermination protein NusB [Bordetella avium 197N] gi|115421666|emb|CAJ48176.1| N utilization substance protein B [Bordetella avium 197N] Length = 156 Score = 137 bits (347), Expect = 4e-31, Method: Composition-based stats. Identities = 39/150 (26%), Positives = 64/150 (42%), Gaps = 12/150 (8%) Query: 21 LAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRK 80 A+Q +Y + G T+ E + + L + D +WF+ ++HGV+ Sbjct: 16 EFALQGVYAWLLRGGQDTQDAGEIDAH-------LRDAEDFSEADAQWFKTLLHGVLREA 68 Query: 81 QHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYG 140 + + + + L + IL G EL+ VP +V I+E V +A F Sbjct: 69 PTLREHFTPYIDR--PLAELSPVEHGILLIGSYELVHHVEVPYKVAINEAVELAKSFGGT 126 Query: 141 DEPKFINAVLDKVSRKEEIKRSGCVSAITQ 170 D KF+N VLDK++ R+ V A Q Sbjct: 127 DGFKFVNGVLDKLAADV---RTAEVEAAAQ 153 >gi|300312879|ref|YP_003776971.1| transcription antiterminator (L factor) transcription regulator protein [Herbaspirillum seropedicae SmR1] gi|300075664|gb|ADJ65063.1| transcription antiterminator (L factor) transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 156 Score = 137 bits (347), Expect = 4e-31, Method: Composition-based stats. Identities = 34/168 (20%), Positives = 65/168 (38%), Gaps = 17/168 (10%) Query: 1 MTIQDNKKDLKLSHR-RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVES 59 M+ + + + R AR A+Q LYQ + I + + Sbjct: 1 MSNKTQHANSNKNRTPRHRAREFALQGLYQWLLNHEDAGAIEA-----------HIREAH 49 Query: 60 VYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECH 119 + D E F ++ G + + + ++ + L + + L G EL Sbjct: 50 GFDKADAEHFDTLLTGAIRDAEKLRAGLAPLIDR--PIKELSPVEHAALLIGAYELQNHI 107 Query: 120 SVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVS---RKEEIKRSGC 164 +P +V+I+E V + F D K++N VLD+ + R E++ +G Sbjct: 108 EIPYKVVINEAVELTKSFGGIDGHKYVNGVLDRFAAQTRATEVEAAGR 155 >gi|282882096|ref|ZP_06290737.1| transcription antitermination factor NusB [Peptoniphilus lacrimalis 315-B] gi|300814940|ref|ZP_07095168.1| transcription antitermination factor NusB [Peptoniphilus sp. oral taxon 836 str. F0141] gi|281298126|gb|EFA90581.1| transcription antitermination factor NusB [Peptoniphilus lacrimalis 315-B] gi|300510910|gb|EFK38182.1| transcription antitermination factor NusB [Peptoniphilus sp. oral taxon 836 str. F0141] Length = 139 Score = 137 bits (347), Expect = 4e-31, Method: Composition-based stats. Identities = 35/143 (24%), Positives = 68/143 (47%), Gaps = 12/143 (8%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 R AR+ A+Q LY +++ + E I ++ +++E + +I Sbjct: 3 RKNARVGAMQLLYSMELNKDFSQENIEKFFENYDFSESEQ-----------SYINSVISE 51 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135 +++ +D ++S L + W+ RL + ILR + E + +PVEV I+E V IA Sbjct: 52 LVNNLDSVDKVLSDNL-QGWTIPRLATVDREILRVAIFEFLYRKDIPVEVSINEAVEIAK 110 Query: 136 DFFYGDEPKFINAVLDKVSRKEE 158 + + PKF+N +L + + + Sbjct: 111 KYSSEESPKFVNGILASILKNLK 133 >gi|269127152|ref|YP_003300522.1| NusB antitermination factor [Thermomonospora curvata DSM 43183] gi|268312110|gb|ACY98484.1| NusB antitermination factor [Thermomonospora curvata DSM 43183] Length = 138 Score = 137 bits (347), Expect = 4e-31, Method: Composition-based stats. Identities = 35/140 (25%), Positives = 66/140 (47%), Gaps = 12/140 (8%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 R AR A+ LY ++ G T+++++ + E +I G Sbjct: 4 RTKARKLALDILYAAEMRGERPTDVLAQRGRPNTDEISA-----------REHAVRLIEG 52 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135 V + ++ ID L+++ T W+ R+ + ++LR G EL+ VP V I+E V +A Sbjct: 53 VQEHRERIDELLATYAT-GWTLDRMPAVDRNLLRLGAYELLWVDDVPDGVAIAEAVALAT 111 Query: 136 DFFYGDEPKFINAVLDKVSR 155 + + P+F+N +L ++ R Sbjct: 112 ELSTDESPRFVNGLLSRLQR 131 >gi|71898912|ref|ZP_00681079.1| Antitermination protein NusB [Xylella fastidiosa Ann-1] gi|71731324|gb|EAO33388.1| Antitermination protein NusB [Xylella fastidiosa Ann-1] Length = 157 Score = 137 bits (347), Expect = 4e-31, Method: Composition-based stats. Identities = 34/135 (25%), Positives = 58/135 (42%), Gaps = 16/135 (11%) Query: 28 YQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLI 87 Y I G ++I+ + E Y DL +F ++ GV+ +D + Sbjct: 34 YAWQISGGVAKQVIAHFAH-----------EQAYEVADLVYFEDLVEGVLTHCAELDEKL 82 Query: 88 SSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFIN 147 + L + +D I ++LR G EL+ VP V+I+E + A F ++N Sbjct: 83 TPYLDR--TIEEVDAIERAVLRLGAYELLYRQDVPYRVVINEAIMTAKRFGSKYGHTYVN 140 Query: 148 AVLDKVS---RKEEI 159 VLD+ + RK E+ Sbjct: 141 GVLDRAALVLRKVEV 155 >gi|148272974|ref|YP_001222535.1| putative antitermination protein [Clavibacter michiganensis subsp. michiganensis NCPPB 382] gi|166215681|sp|A5CRY5|NUSB_CLAM3 RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|147830904|emb|CAN01848.1| putative antitermination protein [Clavibacter michiganensis subsp. michiganensis NCPPB 382] Length = 137 Score = 137 bits (347), Expect = 4e-31, Method: Composition-based stats. Identities = 35/139 (25%), Positives = 61/139 (43%), Gaps = 9/139 (6%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 R AR A+ LY DI G S ++ + + ++ R I G Sbjct: 4 RTKARKRALDVLYVADIRGESIPATLA--------VEQQRAAAEPDRQASWQYAREIAEG 55 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135 + + ID LI + + W+ +R+ + +ILR G+ E++ VP V ISE V +A Sbjct: 56 FVAHQDEIDELIETY-SVNWTLARMPAVDRAILRIGIWEILFNADVPHGVAISESVDLAS 114 Query: 136 DFFYGDEPKFINAVLDKVS 154 + F+N +L +++ Sbjct: 115 SLSTDESASFVNGMLARIA 133 >gi|116670816|ref|YP_831749.1| NusB antitermination factor [Arthrobacter sp. FB24] gi|166215661|sp|A0JX79|NUSB_ARTS2 RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|116610925|gb|ABK03649.1| NusB antitermination factor [Arthrobacter sp. FB24] Length = 136 Score = 137 bits (347), Expect = 4e-31, Method: Composition-based stats. Identities = 32/138 (23%), Positives = 58/138 (42%), Gaps = 14/138 (10%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 RG AR A+ L++ + S +++ + + I+ G Sbjct: 4 RGKARNRALDVLFEAEQRSLSAFDVLRSRR-------------EKTDQIVNPYTLEIVEG 50 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135 V+ + ID + + ++ W+ R+ + ILR G EL+ VP V +SE V +A Sbjct: 51 VVSHQAAIDEFLETY-SQGWTLERMPSVDRIILRIGTWELLYNDDVPDGVAVSEAVALAK 109 Query: 136 DFFYGDEPKFINAVLDKV 153 + P FIN +L ++ Sbjct: 110 TLSTDESPSFINGLLGRL 127 >gi|296125572|ref|YP_003632824.1| NusB antitermination factor [Brachyspira murdochii DSM 12563] gi|296017388|gb|ADG70625.1| NusB antitermination factor [Brachyspira murdochii DSM 12563] Length = 154 Score = 137 bits (346), Expect = 4e-31, Method: Composition-based stats. Identities = 44/159 (27%), Positives = 69/159 (43%), Gaps = 17/159 (10%) Query: 3 IQDNKKDLKLSH--RRGIARLAAVQALYQIDII--GCSTTEIISEYETYRFCADTELDVE 58 ++N KDL LS R AR+ AV +LY +I S I+ + D + Sbjct: 7 NKENIKDLDLSAYGARRQARIYAVMSLYSYEINERKISINNIL------------DFDYD 54 Query: 59 SVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIEC 118 + R ++ G + + ID LI + W R+ + SI+R + LI Sbjct: 55 KKIPENIFAFTRNLVEGTIKNLERIDSLIEKY-SNNWDIKRIQYVDKSIIRMSIYSLIFL 113 Query: 119 HSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKE 157 +P V+I E V IA F D KF+N +LD + ++ Sbjct: 114 KDIPKSVVIDEAVEIAKIFSDKDSYKFVNGILDGIQEED 152 >gi|271964358|ref|YP_003338554.1| transcription antitermination factor NusB [Streptosporangium roseum DSM 43021] gi|270507533|gb|ACZ85811.1| transcription antitermination factor NusB [Streptosporangium roseum DSM 43021] Length = 136 Score = 137 bits (346), Expect = 4e-31, Method: Composition-based stats. Identities = 37/147 (25%), Positives = 68/147 (46%), Gaps = 17/147 (11%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 RG AR A+ L++ + +++E E + I+ G Sbjct: 4 RGKARRRALDILFEAEARSQDPLSVLAERLERAEPPVNE-------------YTATIVEG 50 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135 V + ID LI++ E W+ R+ + ++LR G EL+ VP V+ISE+V +A Sbjct: 51 VCRHRARIDELITTY-AEGWTLDRMPAVDRNLLRGGTYELLWMPDVPEGVVISEWVSLAS 109 Query: 136 DFFYGDEPKFINAVLDKVSRKEEIKRS 162 + + P+F+N + ++R +++K S Sbjct: 110 ELSTDESPQFVNGL---MARFKQLKPS 133 >gi|171463084|ref|YP_001797197.1| NusB antitermination factor [Polynucleobacter necessarius subsp. necessarius STIR1] gi|171192622|gb|ACB43583.1| NusB antitermination factor [Polynucleobacter necessarius subsp. necessarius STIR1] Length = 169 Score = 137 bits (346), Expect = 5e-31, Method: Composition-based stats. Identities = 42/159 (26%), Positives = 67/159 (42%), Gaps = 13/159 (8%) Query: 3 IQDNKKDLKLSHRR-----GIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDV 57 KD K S +R AR A+Q +YQ S + +L Sbjct: 10 NPPAGKDAKPSPKRSLTPRRRAREYALQGVYQ------SLVMRRAGSIPNGAAIAKQLSE 63 Query: 58 ESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIE 117 + + L+ F+ I GV+ R ++ +I+ L + L + + L G EL Sbjct: 64 DPAFRRCQLDLFQSIFDGVLARTDELEAIITPALDR--PINELSPVEHAALLIGAYELAA 121 Query: 118 CHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRK 156 SVP +V I+E V +A F D K++N VLD +++K Sbjct: 122 DLSVPYKVAINEAVELAKTFGGTDGHKYVNGVLDLLAQK 160 >gi|307265164|ref|ZP_07546723.1| NusB antitermination factor [Thermoanaerobacter wiegelii Rt8.B1] gi|306919786|gb|EFN50001.1| NusB antitermination factor [Thermoanaerobacter wiegelii Rt8.B1] Length = 140 Score = 137 bits (346), Expect = 5e-31, Method: Composition-based stats. Identities = 34/148 (22%), Positives = 63/148 (42%), Gaps = 14/148 (9%) Query: 15 RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74 R AR V+ LYQ D+ ++I + + + E+ + Sbjct: 2 NRTEAREWVVKMLYQYDVSRLPISKIFENFYKENDPGEQK------------EYIENTVI 49 Query: 75 GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134 G ++ + ID I ++ W+ +R+ I +ILR + E+ ++PV + I+E V IA Sbjct: 50 GAIEHLEEIDKEIERY-SQNWALNRMPKIDLAILRCSIYEMQYG-NIPVNISINEAVEIA 107 Query: 135 HDFFYGDEPKFINAVLDKVSRKEEIKRS 162 + D FIN +L R + ++ Sbjct: 108 KKYSTEDSHVFINGLLGAFVRDKGLEEG 135 >gi|269926747|ref|YP_003323370.1| NusB antitermination factor [Thermobaculum terrenum ATCC BAA-798] gi|269790407|gb|ACZ42548.1| NusB antitermination factor [Thermobaculum terrenum ATCC BAA-798] Length = 153 Score = 137 bits (346), Expect = 5e-31, Method: Composition-based stats. Identities = 36/150 (24%), Positives = 62/150 (41%), Gaps = 12/150 (8%) Query: 14 HRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVII 73 +R AR A+Q LY+ + EI+ E + + Sbjct: 10 QQRHQARALAMQVLYEAETTRKQPYEILQRRRN-----------EENIPEQVHAYASDLA 58 Query: 74 HGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCI 133 GV ++ D LI+ T W+ ++ + +ILR V E++ + VP+ I+E V + Sbjct: 59 IGVWQNRKEYDSLITRF-TPTWTIDQMAKVDRNILRIAVHEMLRRNDVPIAAAINEAVEL 117 Query: 134 AHDFFYGDEPKFINAVLDKVSRKEEIKRSG 163 A ++ PKF+N VL ++ E G Sbjct: 118 AKEYGAEASPKFVNGVLGAIADAIESSSGG 147 >gi|71276430|ref|ZP_00652706.1| Antitermination protein NusB [Xylella fastidiosa Dixon] gi|71900509|ref|ZP_00682639.1| Antitermination protein NusB [Xylella fastidiosa Ann-1] gi|170730978|ref|YP_001776411.1| transcription antitermination protein NusB [Xylella fastidiosa M12] gi|238687943|sp|B0U4K2|NUSB_XYLFM RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|71162746|gb|EAO12472.1| Antitermination protein NusB [Xylella fastidiosa Dixon] gi|71729749|gb|EAO31850.1| Antitermination protein NusB [Xylella fastidiosa Ann-1] gi|167965771|gb|ACA12781.1| transcription termination factor [Xylella fastidiosa M12] Length = 157 Score = 137 bits (346), Expect = 5e-31, Method: Composition-based stats. Identities = 34/135 (25%), Positives = 58/135 (42%), Gaps = 16/135 (11%) Query: 28 YQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLI 87 Y I G ++I+ + E Y DL +F ++ GV+ +D + Sbjct: 34 YAWQISGGVAKQVIAHFAH-----------EQAYEVADLVYFEDLVEGVLTHCAELDEKL 82 Query: 88 SSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFIN 147 + L + +D I ++LR G EL+ VP V+I+E + A F ++N Sbjct: 83 TPYLDR--TIEEVDAIERAVLRLGAYELLYRQDVPYRVVINEAIMTAKRFGSKYGHTYVN 140 Query: 148 AVLDKVS---RKEEI 159 VLD+ + RK E+ Sbjct: 141 GVLDRAALALRKVEV 155 >gi|306828961|ref|ZP_07462153.1| transcription antitermination factor NusB [Streptococcus mitis ATCC 6249] gi|304429139|gb|EFM32227.1| transcription antitermination factor NusB [Streptococcus mitis ATCC 6249] Length = 140 Score = 137 bits (346), Expect = 5e-31, Method: Composition-based stats. Identities = 36/143 (25%), Positives = 62/143 (43%), Gaps = 11/143 (7%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 R R A QAL ++ G RF + + V L + ++ G Sbjct: 9 RRQLRKCAFQALMSLEF-GTDVET------ACRFAYTHDREDTDVQLPA---FLTELVSG 58 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135 V +K+ +D I+ L W+ RL ++ ++LR GV E+ P V ++E + +A Sbjct: 59 VQAKKEELDKQITQHLKAGWTIERLTLVERNLLRLGVFEITSF-DTPQLVAVNEAIELAK 117 Query: 136 DFFYGDEPKFINAVLDKVSRKEE 158 DF +FIN +L + +E+ Sbjct: 118 DFSDQKSARFINGLLGQFVTEEQ 140 >gi|284048210|ref|YP_003398549.1| NusB antitermination factor [Acidaminococcus fermentans DSM 20731] gi|283952431|gb|ADB47234.1| NusB antitermination factor [Acidaminococcus fermentans DSM 20731] Length = 139 Score = 137 bits (346), Expect = 5e-31, Method: Composition-based stats. Identities = 38/142 (26%), Positives = 69/142 (48%), Gaps = 9/142 (6%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 R AR A+++L+ ++ + E ET R A+ E ++ DL + ++ G Sbjct: 3 RRDARTIAMRSLFALEFSPEQSPE-----ETVRTMAEEEDIQDTR--KKDLAYALDLVKG 55 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHS-VPVEVIISEYVCIA 134 V + ++ +D ++ L KW+ R++ I ++LR E+ VP V I+E V +A Sbjct: 56 VRENQEALDGELNG-LDAKWTLKRMNGIDRNLLRIAGYEMFCSPEPVPPAVAINEAVELA 114 Query: 135 HDFFYGDEPKFINAVLDKVSRK 156 + D P FIN +L + +K Sbjct: 115 KVYGGDDSPAFINGLLGSLVKK 136 >gi|184155740|ref|YP_001844080.1| transcription antitermination protein NusB [Lactobacillus fermentum IFO 3956] gi|238692985|sp|B2GD68|NUSB_LACF3 RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|183227084|dbj|BAG27600.1| transcription termination factor [Lactobacillus fermentum IFO 3956] Length = 139 Score = 137 bits (346), Expect = 5e-31, Method: Composition-based stats. Identities = 34/142 (23%), Positives = 53/142 (37%), Gaps = 11/142 (7%) Query: 12 LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71 ++ +R R A Q L+ + S E+ E + + Sbjct: 1 MTFKRRRIREVAFQTLFAM----VSDPEVDREQLYKELLPLAPQEEVP-------AYLEE 49 Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131 ++ GV + + D I L WS SR++ ILR + E+ VPV V I E + Sbjct: 50 LVTGVSEHQAEFDQEIEGSLAAGWSLSRVEKPNLIILRLALYEMKYVDDVPVAVAIDEAL 109 Query: 132 CIAHDFFYGDEPKFINAVLDKV 153 + F KFIN VL + Sbjct: 110 EMTKKFSDDKSRKFINGVLGHI 131 >gi|289706203|ref|ZP_06502566.1| transcription antitermination factor NusB [Micrococcus luteus SK58] gi|289557042|gb|EFD50370.1| transcription antitermination factor NusB [Micrococcus luteus SK58] Length = 150 Score = 137 bits (346), Expect = 5e-31, Method: Composition-based stats. Identities = 38/143 (26%), Positives = 69/143 (48%), Gaps = 14/143 (9%) Query: 11 KLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFR 70 + + R +R AV+ L++ + G + E I T R D +++ + + Sbjct: 13 RGTTARSRSRQRAVEILFEAEQRGSTALEGIR---TRRESTDLQVN----------AYTQ 59 Query: 71 VIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEY 130 ++ GV+ ++ +D +SS + WS R+ + +ILR G EL+ VP V ISE Sbjct: 60 RLVEGVIADQERLDEALSSY-SRGWSLDRMPAVDLAILRVGAWELLFQDDVPDAVAISEA 118 Query: 131 VCIAHDFFYGDEPKFINAVLDKV 153 V +A D P+F+N +L ++ Sbjct: 119 VALAAQLSTDDSPEFVNGLLGRL 141 >gi|188586319|ref|YP_001917864.1| NusB antitermination factor [Natranaerobius thermophilus JW/NM-WN-LF] gi|229620365|sp|B2A534|NUSB_NATTJ RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|179351006|gb|ACB85276.1| NusB antitermination factor [Natranaerobius thermophilus JW/NM-WN-LF] Length = 139 Score = 137 bits (346), Expect = 5e-31, Method: Composition-based stats. Identities = 34/146 (23%), Positives = 62/146 (42%), Gaps = 9/146 (6%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 R AR A+++ ++Q+ E+ +E D + + + ++ ++ Sbjct: 3 RRTAREASMKLVFQMAFNDDHVDEVGAE--------DILAQAKEELNYNNYQYIETVVSR 54 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135 Q ID I +E W RL + SILR + E++ +P V I+E V +A Sbjct: 55 TESNLQKIDEYIEKF-SENWKIDRLSKVDLSILRLAISEILFFDDIPTRVSINEAVELAK 113 Query: 136 DFFYGDEPKFINAVLDKVSRKEEIKR 161 F +IN +LD+V+ + R Sbjct: 114 KFSTDKASGYINGILDQVANQLNKAR 139 >gi|157964229|ref|YP_001499053.1| transcription antitermination protein NusB [Rickettsia massiliae MTU5] gi|166918810|sp|A8F0S0|NUSB_RICM5 RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|157844005|gb|ABV84506.1| N utilization substance protein B [Rickettsia massiliae MTU5] Length = 156 Score = 137 bits (346), Expect = 5e-31, Method: Composition-based stats. Identities = 41/145 (28%), Positives = 84/145 (57%), Gaps = 2/145 (1%) Query: 14 HRRGIARLAAVQALYQ-IDIIGCSTTEIISEYETYRFCADTELD-VESVYLHVDLEWFRV 71 +++ IAR+AAVQA+YQ I +I+ ++ ++ D E++ + + + F++ Sbjct: 7 NKKSIARIAAVQAIYQNILQNNDDMDDIMQNVLSFYQNNNSITDLPENLKISLSISHFKM 66 Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131 ++ V + +D +I + LT + + ++L ++LR + EL+ C + P +V+I+EY Sbjct: 67 LVKSVFENINKLDEIIDNHLTNDKDPAHMPILLRALLRVSICELLFCPTTPAKVVINEYT 126 Query: 132 CIAHDFFYGDEPKFINAVLDKVSRK 156 IA+D E F+N+VLDK++++ Sbjct: 127 DIANDMLNEHEIGFVNSVLDKIAKE 151 >gi|228477148|ref|ZP_04061786.1| transcription antitermination factor NusB [Streptococcus salivarius SK126] gi|312863702|ref|ZP_07723940.1| transcription antitermination factor NusB [Streptococcus vestibularis F0396] gi|322516050|ref|ZP_08068987.1| transcription antitermination factor NusB [Streptococcus vestibularis ATCC 49124] gi|228251167|gb|EEK10338.1| transcription antitermination factor NusB [Streptococcus salivarius SK126] gi|311101238|gb|EFQ59443.1| transcription antitermination factor NusB [Streptococcus vestibularis F0396] gi|322125465|gb|EFX96811.1| transcription antitermination factor NusB [Streptococcus vestibularis ATCC 49124] Length = 144 Score = 137 bits (346), Expect = 6e-31, Method: Composition-based stats. Identities = 39/143 (27%), Positives = 62/143 (43%), Gaps = 9/143 (6%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLE-WFRVIIH 74 R R A Q L+ ++ G + + + + D +D E VD+ + ++ Sbjct: 9 RRDLRERAFQTLFALEFGGEALEQA-----HFAYTYDKPIDEE---TEVDVPAFLLSLVT 60 Query: 75 GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134 GV + +D I L E WS SRL + ++LR G+ E+ P V I+E + IA Sbjct: 61 GVREELAQLDSQIEEKLKEGWSLSRLIVTDRTLLRLGLYEITSFEETPGRVAINEIIEIA 120 Query: 135 HDFFYGDEPKFINAVLDKVSRKE 157 + KFIN VL + E Sbjct: 121 KKYSDETSAKFINGVLSQFVTDE 143 >gi|28199615|ref|NP_779929.1| transcription antitermination protein NusB [Xylella fastidiosa Temecula1] gi|182682359|ref|YP_001830519.1| transcription antitermination protein NusB [Xylella fastidiosa M23] gi|32129808|sp|Q87AS8|NUSB_XYLFT RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|238691093|sp|B2I8Q4|NUSB_XYLF2 RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|28057730|gb|AAO29578.1| transcription termination factor [Xylella fastidiosa Temecula1] gi|182632469|gb|ACB93245.1| NusB antitermination factor [Xylella fastidiosa M23] gi|307578641|gb|ADN62610.1| transcription antitermination protein NusB [Xylella fastidiosa subsp. fastidiosa GB514] Length = 157 Score = 137 bits (346), Expect = 6e-31, Method: Composition-based stats. Identities = 34/135 (25%), Positives = 58/135 (42%), Gaps = 16/135 (11%) Query: 28 YQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLI 87 Y I G ++I+ + E Y DL +F ++ GV+ +D + Sbjct: 34 YAWQISGGVAKQVIAHFAH-----------EQAYEVADLVYFEDLVEGVLTHCAELDEKL 82 Query: 88 SSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFIN 147 + L + +D I ++LR G EL+ VP V+I+E + A F ++N Sbjct: 83 TPYLDR--TIEEVDAIERAVLRLGAYELLYRQDVPYRVVINEAIMTAKRFGSKYGHTYVN 140 Query: 148 AVLDKVS---RKEEI 159 VLD+ + RK E+ Sbjct: 141 GVLDRAALALRKVEV 155 >gi|306807668|ref|ZP_07444336.1| putative transcription antitermination factor NusB [Mycobacterium tuberculosis SUMu007] gi|308345910|gb|EFP34761.1| putative transcription antitermination factor NusB [Mycobacterium tuberculosis SUMu007] Length = 232 Score = 137 bits (345), Expect = 6e-31, Method: Composition-based stats. Identities = 37/128 (28%), Positives = 63/128 (49%), Gaps = 9/128 (7%) Query: 26 ALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDL 85 L++ ++ G S E++ T A+ + D+ ++ + + GV + HID Sbjct: 3 LLFEAEVRGISAAEVVD---TRAALAEAKPDIARLH-----PYTAAVARGVSEHAAHIDD 54 Query: 86 LISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKF 145 LI++ L W+ RL + +ILR V EL+ VP V++ E V +A + D P F Sbjct: 55 LITAHL-RGWTLDRLPAVDRAILRVSVWELLHAADVPEPVVVDEAVQLAKELSTDDSPGF 113 Query: 146 INAVLDKV 153 +N VL +V Sbjct: 114 VNGVLGQV 121 >gi|227544393|ref|ZP_03974442.1| transcription antitermination protein NusB [Lactobacillus reuteri CF48-3A] gi|227185656|gb|EEI65727.1| transcription antitermination protein NusB [Lactobacillus reuteri CF48-3A] Length = 138 Score = 137 bits (345), Expect = 6e-31, Method: Composition-based stats. Identities = 34/150 (22%), Positives = 60/150 (40%), Gaps = 12/150 (8%) Query: 12 LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71 +S R + R A Q L+ + +I + YE + ++ + Sbjct: 1 MSLNRHMIREEAFQVLFALQ--SDPEADIQTVYEAIPHHDEKQIP----------PYLLT 48 Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131 +++GV + + +D I+ L W+ +RL ILR + E+ +VP V I+E + Sbjct: 49 LVNGVREHQDQLDEQINDLLASGWTINRLAKPDLVILRLALFEIQYAENVPTVVAINEAL 108 Query: 132 CIAHDFFYGDEPKFINAVLDKVSRKEEIKR 161 + F KFIN L K R+ Sbjct: 109 ELTKTFSSDKSRKFINGALGKFERQVNTNN 138 >gi|313887990|ref|ZP_07821668.1| transcription antitermination factor NusB [Peptoniphilus harei ACS-146-V-Sch2b] gi|312845945|gb|EFR33328.1| transcription antitermination factor NusB [Peptoniphilus harei ACS-146-V-Sch2b] Length = 132 Score = 137 bits (345), Expect = 6e-31, Method: Composition-based stats. Identities = 38/140 (27%), Positives = 66/140 (47%), Gaps = 12/140 (8%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 R AR+ A+QAL+ +D+ +T+ + + E+D + + + Sbjct: 3 RKRARIGAMQALFAMDVNDDFSTDKLDLFMENHEFQGDEVD-----------YIKRTVPD 51 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135 ++D+ +D I L + W+ +RL + ILR V E + +P EV I+E V IA Sbjct: 52 ILDKLDLVDETIEKNL-KGWTMARLAKVDRQILRIAVYEFLYKDDIPEEVSINEAVEIAR 110 Query: 136 DFFYGDEPKFINAVLDKVSR 155 + + PKFIN +L + R Sbjct: 111 LYSSDEAPKFINGILGTIYR 130 >gi|283782240|ref|YP_003372995.1| NusB antitermination factor [Pirellula staleyi DSM 6068] gi|283440693|gb|ADB19135.1| NusB antitermination factor [Pirellula staleyi DSM 6068] Length = 136 Score = 137 bits (345), Expect = 6e-31, Method: Composition-based stats. Identities = 37/145 (25%), Positives = 69/145 (47%), Gaps = 12/145 (8%) Query: 14 HRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVII 73 RR AR +Q LY+ D+ + + + R D EL +++ R ++ Sbjct: 2 ARRSRAREVVLQILYEDDLNPDRSIAVSDVFLRRRLGDDVEL----------VDFARDLL 51 Query: 74 HGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCI 133 GV R++ +D+L+ + W+ R+ + ++LR G E++ P V I+E V + Sbjct: 52 RGVRGRRKELDVLLQQK-ADHWTLDRMAVTDRNVLRLGAYEILHTQ-TPQRVAINEAVEL 109 Query: 134 AHDFFYGDEPKFINAVLDKVSRKEE 158 A F P+F+N +LD+ +K+ Sbjct: 110 AKRFGARQSPQFVNGILDRFLQKKR 134 >gi|328881138|emb|CCA54377.1| Transcription termination protein NusB [Streptomyces venezuelae ATCC 10712] Length = 145 Score = 137 bits (345), Expect = 6e-31, Method: Composition-based stats. Identities = 36/146 (24%), Positives = 64/146 (43%), Gaps = 12/146 (8%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 R AR A Q L++ D G S +++++ D + V ++ ++ G Sbjct: 4 RSKARKRAFQILFEADQRGASVQQVLADQVRLARSDDRQPPVS--------DFTMQLVEG 55 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135 ID LI++ W R+ + +I+R G E+I P V I E V +A Sbjct: 56 YAAHVARIDELIATYAV-DWDLDRMPVADRNIVRLGAYEVIWEDGTPDAVAIDEAVQLAK 114 Query: 136 DFFYGDEPKFINAVLDKVSRKEEIKR 161 +F + P F+N +L +R +++K Sbjct: 115 EFSTDESPTFVNGLL---ARFKDLKP 137 >gi|307299170|ref|ZP_07578971.1| NusB antitermination factor [Thermotogales bacterium mesG1.Ag.4.2] gi|306914966|gb|EFN45352.1| NusB antitermination factor [Thermotogales bacterium mesG1.Ag.4.2] Length = 148 Score = 137 bits (345), Expect = 6e-31, Method: Composition-based stats. Identities = 40/146 (27%), Positives = 68/146 (46%), Gaps = 12/146 (8%) Query: 12 LSHRRGIARLAAVQALYQIDII-GCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFR 70 ++ R R A+YQ D ++ E E F + E+ + + ++F Sbjct: 5 PNNSRRKMREIVFSAIYQFDFNEDMESSSDYLEQELSFFSMEMEMKLRT------RKYFD 58 Query: 71 VIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEY 130 I+ + ID +I LT W+F RL ++LR G E+I +P+EV ++E Sbjct: 59 TILK----NRNEIDEIIRKHLT-NWTFERLASTDKNVLRLGAYEIIYEPDIPIEVTLNES 113 Query: 131 VCIAHDFFYGDEPKFINAVLDKVSRK 156 + IA + KF+N VLDK++R+ Sbjct: 114 IDIAKKYGSEQGGKFVNGVLDKIARE 139 >gi|303255410|ref|ZP_07341476.1| transcription antitermination protein NusB [Streptococcus pneumoniae BS455] gi|303259505|ref|ZP_07345482.1| transcription antitermination protein NusB [Streptococcus pneumoniae SP-BS293] gi|303262368|ref|ZP_07348311.1| transcription antitermination protein NusB [Streptococcus pneumoniae SP14-BS292] gi|303264786|ref|ZP_07350703.1| transcription antitermination protein NusB [Streptococcus pneumoniae BS397] gi|303266625|ref|ZP_07352510.1| transcription antitermination protein NusB [Streptococcus pneumoniae BS457] gi|303268858|ref|ZP_07354645.1| transcription antitermination protein NusB [Streptococcus pneumoniae BS458] gi|301801342|emb|CBW34025.1| N utilization substance protein B homolog (NusB protein) [Streptococcus pneumoniae INV200] gi|302597655|gb|EFL64735.1| transcription antitermination protein NusB [Streptococcus pneumoniae BS455] gi|302636467|gb|EFL66959.1| transcription antitermination protein NusB [Streptococcus pneumoniae SP14-BS292] gi|302639439|gb|EFL69897.1| transcription antitermination protein NusB [Streptococcus pneumoniae SP-BS293] gi|302641639|gb|EFL71999.1| transcription antitermination protein NusB [Streptococcus pneumoniae BS458] gi|302643869|gb|EFL74131.1| transcription antitermination protein NusB [Streptococcus pneumoniae BS457] gi|302645653|gb|EFL75883.1| transcription antitermination protein NusB [Streptococcus pneumoniae BS397] Length = 140 Score = 137 bits (345), Expect = 6e-31, Method: Composition-based stats. Identities = 37/143 (25%), Positives = 62/143 (43%), Gaps = 11/143 (7%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 R R A QAL ++ G RF + + V L + ++ G Sbjct: 9 RRQLRKCAFQALMSLEF-GTDVET------ACRFAYTHDREYTDVQLPA---FLIDLVSG 58 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135 V +K+ +D I+ L W+ RL ++ ++LR GV E+ P V I+E + +A Sbjct: 59 VQAKKEELDKQITQHLKAGWTIERLTLVERNLLRLGVFEITSF-DTPQLVAINEAIELAK 117 Query: 136 DFFYGDEPKFINAVLDKVSRKEE 158 DF +FIN +L + +E+ Sbjct: 118 DFSDQKSARFINGLLSQFVTEEQ 140 >gi|319946361|ref|ZP_08020599.1| N utilization substance protein B [Streptococcus australis ATCC 700641] gi|319747514|gb|EFV99769.1| N utilization substance protein B [Streptococcus australis ATCC 700641] Length = 142 Score = 137 bits (345), Expect = 6e-31, Method: Composition-based stats. Identities = 37/143 (25%), Positives = 61/143 (42%), Gaps = 9/143 (6%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 R R A QAL ++ G + E + F D E + V + + ++ G Sbjct: 9 RRDLRERAFQALMSLEYEGD-----VVEACRFAFTHDKEETDQEVEIPA---FLLNLVSG 60 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135 V K +D I+ L W+ RL ++ +ILR GV E+ P V ++E + +A Sbjct: 61 VRQSKDELDKQIAQHLKTGWTVERLTLVEKNILRLGVFEITSF-DTPQLVAVNEAIELAK 119 Query: 136 DFFYGDEPKFINAVLDKVSRKEE 158 F +F+N VL + + E Sbjct: 120 TFSDEKSARFVNGVLSQFVTEAE 142 >gi|145594393|ref|YP_001158690.1| transcription antitermination factor NusB [Salinispora tropica CNB-440] gi|189035903|sp|A4X612|NUSB_SALTO RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|145303730|gb|ABP54312.1| transcription antitermination factor NusB [Salinispora tropica CNB-440] Length = 136 Score = 137 bits (345), Expect = 7e-31, Method: Composition-based stats. Identities = 36/139 (25%), Positives = 62/139 (44%), Gaps = 11/139 (7%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 R AR A+ L++ D+ G E+++ Y E L + ++ G Sbjct: 4 RRKARKRALDVLFEADLRGRPPVEVLAGYVERIEKPRPEH----------LGYAVGLVEG 53 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135 V R +D LI+S E W+ R+ + ++ R V EL+ + V ISE V +A Sbjct: 54 VAARLDRVDELIASY-AEGWTLDRMPTVDRNLARIAVYELLYVDEIDDAVAISEAVELAR 112 Query: 136 DFFYGDEPKFINAVLDKVS 154 D P+F+N +L +++ Sbjct: 113 QMSTDDSPRFLNGLLGRIA 131 >gi|320104116|ref|YP_004179707.1| NusB antitermination factor [Isosphaera pallida ATCC 43644] gi|319751398|gb|ADV63158.1| NusB antitermination factor [Isosphaera pallida ATCC 43644] Length = 177 Score = 137 bits (345), Expect = 7e-31, Method: Composition-based stats. Identities = 37/134 (27%), Positives = 59/134 (44%), Gaps = 12/134 (8%) Query: 20 RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79 R +Q LY +D + E I ++ +R + D R +I GV Sbjct: 10 REIVLQVLYMLDHNTGLSQEEIEQFLAWRLREPSWRDE-----------ARGLIEGVRRH 58 Query: 80 KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139 ++ ID +IS L W R+ I ++LR G E++ VPV V I+E V + F Sbjct: 59 RETIDQVISD-LARNWRLDRMAAIDRNVLRLGTYEVLYRLDVPVAVAITEAVELVKRFGS 117 Query: 140 GDEPKFINAVLDKV 153 +F+N +L +V Sbjct: 118 AQSSRFVNGILGRV 131 >gi|170782398|ref|YP_001710731.1| transcription termination protein [Clavibacter michiganensis subsp. sepedonicus] gi|189035882|sp|B0REX0|NUSB_CLAMS RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|169156967|emb|CAQ02136.1| transcription termination protein [Clavibacter michiganensis subsp. sepedonicus] Length = 137 Score = 137 bits (345), Expect = 7e-31, Method: Composition-based stats. Identities = 35/139 (25%), Positives = 61/139 (43%), Gaps = 9/139 (6%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 R AR A+ LY DI G S ++ + + + R I G Sbjct: 4 RTKARKRALDVLYVADIRGESIPATLA--------VEQQRAAAEPDRQASWAYAREIAEG 55 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135 ++ + ID LI + + W+ +R+ + +ILR G+ E++ VP V ISE V +A Sbjct: 56 FVEHQDEIDELIETY-SVNWTLARMPAVDRAILRIGIWEILFNADVPDGVAISESVDLAS 114 Query: 136 DFFYGDEPKFINAVLDKVS 154 + F+N +L +++ Sbjct: 115 SLSTDESASFVNGMLARIA 133 >gi|241758553|ref|ZP_04756670.1| transcription antitermination factor NusB [Neisseria flavescens SK114] gi|241321296|gb|EER57456.1| transcription antitermination factor NusB [Neisseria flavescens SK114] Length = 142 Score = 137 bits (345), Expect = 7e-31, Method: Composition-based stats. Identities = 41/155 (26%), Positives = 60/155 (38%), Gaps = 16/155 (10%) Query: 12 LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71 + R AR AVQA+YQ I + EI S ++D E F Sbjct: 1 MKSPRRRARELAVQAIYQAGINKTAAPEIAKNIHEL-----------SQTSNMDEELFNK 49 Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131 + G + IS L L I ++L EL P VII+E + Sbjct: 50 LFFGTQTHAEEYMEKISPLLDRDEK--DLSPIERAVLLVACHELSTMPETPYPVIINEAI 107 Query: 132 CIAHDFFYGDEPKFINAVLDKVS---RKEEIKRSG 163 + F D KF+N +LD+++ R +E +R G Sbjct: 108 EVTKTFGGTDGHKFVNGILDQLASRIRPDEPRRKG 142 >gi|15837557|ref|NP_298245.1| transcription antitermination protein NusB [Xylella fastidiosa 9a5c] gi|22095972|sp|Q9PES3|NUSB_XYLFA RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|9105883|gb|AAF83765.1|AE003934_7 transcription termination factor [Xylella fastidiosa 9a5c] Length = 157 Score = 136 bits (344), Expect = 8e-31, Method: Composition-based stats. Identities = 34/135 (25%), Positives = 58/135 (42%), Gaps = 16/135 (11%) Query: 28 YQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLI 87 Y I G ++I+ + E Y DL +F ++ GV+ +D + Sbjct: 34 YAWQISGGVAKQVIAHFAH-----------EQAYEVADLAYFEDLVEGVLTHCAELDEKL 82 Query: 88 SSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFIN 147 + L + +D I ++LR G EL+ VP V+I+E + A F ++N Sbjct: 83 TPYLDR--TIEEVDAIERAVLRLGAYELLYRQDVPYRVVINEAIMTAKRFGSKYGHTYVN 140 Query: 148 AVLDKVS---RKEEI 159 VLD+ + RK E+ Sbjct: 141 GVLDRAALALRKVEV 155 >gi|254518730|ref|ZP_05130786.1| NusB antitermination factor [Clostridium sp. 7_2_43FAA] gi|226912479|gb|EEH97680.1| NusB antitermination factor [Clostridium sp. 7_2_43FAA] Length = 134 Score = 136 bits (344), Expect = 8e-31, Method: Composition-based stats. Identities = 36/141 (25%), Positives = 61/141 (43%), Gaps = 10/141 (7%) Query: 15 RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74 R +R A++ L+ + + + E I + D E +DLE+ + I+ Sbjct: 2 NRKRSREIAMELLFGMTLSKNTLEETIETFIE---------DYEMNLKTIDLEYIKGILA 52 Query: 75 GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134 V + ID I LT W R+ + SILR + E++ VP +V I+E + + Sbjct: 53 KVEENITVIDQKIEEALT-NWKIDRVSKVNISILRLAIAEMLYVEDVPEKVAINEAIELT 111 Query: 135 HDFFYGDEPKFINAVLDKVSR 155 + F+N VLDK + Sbjct: 112 KKYSDEKSVSFVNGVLDKAFK 132 >gi|148270186|ref|YP_001244646.1| transcription antitermination protein NusB [Thermotoga petrophila RKU-1] gi|166215727|sp|A5ILJ7|NUSB_THEP1 RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|147735730|gb|ABQ47070.1| NusB antitermination factor [Thermotoga petrophila RKU-1] Length = 142 Score = 136 bits (344), Expect = 8e-31, Method: Composition-based stats. Identities = 44/154 (28%), Positives = 70/154 (45%), Gaps = 16/154 (10%) Query: 10 LKLSHRRGIARLAAVQALYQIDII-GCSTTEIISEYETYRFCADTELDVESVYLHVDLEW 68 +K RR RLA +AL+Q + +I+ E + Y E Sbjct: 1 MKTPRRRM--RLAVFKALFQHEFRRDEDLEQILEEIL------------DETYDKKAKED 46 Query: 69 FRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIIS 128 R I G+ + ID LIS L EKWS +RL + ++LR EL+ +P+E I Sbjct: 47 ARRYIRGIKENLPMIDNLISRYL-EKWSLNRLSAVDRNVLRLATYELLFEKDIPIEATID 105 Query: 129 EYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRS 162 E + IA + + KF+N +LD+++++ K Sbjct: 106 EAIEIAKRYGTENSGKFVNGILDRIAKEHAPKEK 139 >gi|159037466|ref|YP_001536719.1| NusB antitermination factor [Salinispora arenicola CNS-205] gi|189035900|sp|A8LY11|NUSB_SALAI RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|157916301|gb|ABV97728.1| NusB antitermination factor [Salinispora arenicola CNS-205] Length = 136 Score = 136 bits (344), Expect = 8e-31, Method: Composition-based stats. Identities = 33/139 (23%), Positives = 60/139 (43%), Gaps = 11/139 (7%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 R AR A+ L++ D+ E+++ Y E L + ++ G Sbjct: 4 RRKARKRALDVLFEADLRDRPPVEVLAGYVERLEKPRPEH----------LGYAVGLVEG 53 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135 + +D LI+S E W+ R+ + ++ R V EL+ + V ISE V +A Sbjct: 54 IAVHLDRLDELIASY-AEGWTLDRMPAVDRNLARIAVYELLYVDEIDDAVAISEAVELAR 112 Query: 136 DFFYGDEPKFINAVLDKVS 154 D P+F+N +L +++ Sbjct: 113 QMSTDDSPRFLNGILGRIA 131 >gi|256847385|ref|ZP_05552831.1| transcription antitermination factor NusB [Lactobacillus coleohominis 101-4-CHN] gi|256716049|gb|EEU31024.1| transcription antitermination factor NusB [Lactobacillus coleohominis 101-4-CHN] Length = 137 Score = 136 bits (344), Expect = 8e-31, Method: Composition-based stats. Identities = 35/145 (24%), Positives = 62/145 (42%), Gaps = 11/145 (7%) Query: 12 LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71 +S R R+AA Q L+ +I + + + Y E ++ Sbjct: 1 MSFSRHTIRIAAFQTLFA--LINNPSADKGALYAEVLKLGSKETAP---------QYLDE 49 Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131 ++ GV + + +D +IS+ LT W+ RL ILR + EL +P ++I+E + Sbjct: 50 LVSGVQEHQADLDAIISNYLTNNWTIDRLARPNLVILRIALYELQYEKELPAPIVINEAL 109 Query: 132 CIAHDFFYGDEPKFINAVLDKVSRK 156 +A F +FIN VL ++ Sbjct: 110 ELAKSFSDDKSRRFINGVLGHYEKE 134 >gi|238650352|ref|YP_002916204.1| transcription antitermination protein NusB [Rickettsia peacockii str. Rustic] gi|259514892|sp|C4K0Q5|NUSB_RICPU RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|238624450|gb|ACR47156.1| transcription antitermination protein NusB [Rickettsia peacockii str. Rustic] Length = 156 Score = 136 bits (344), Expect = 8e-31, Method: Composition-based stats. Identities = 41/145 (28%), Positives = 84/145 (57%), Gaps = 2/145 (1%) Query: 14 HRRGIARLAAVQALYQ-IDIIGCSTTEIISEYETYRFCADTELD-VESVYLHVDLEWFRV 71 +++ IAR+AAVQA+YQ I +I+ ++ ++ D E++ + + + F++ Sbjct: 7 NKKSIARIAAVQAIYQNILQNNDDMDDIMQNVLSFYQNNNSITDLPENLKISLSISHFKM 66 Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131 ++ V + +D +I + LT + + ++L ++LR + EL+ C + P +V+I+EY Sbjct: 67 LVKSVFENIHKLDEIIDNHLTNDKDPAHMPILLRALLRVSICELLFCPTTPAKVVINEYT 126 Query: 132 CIAHDFFYGDEPKFINAVLDKVSRK 156 IA+D E F+N+VLDK++++ Sbjct: 127 DIANDMLNEHEIGFVNSVLDKIAKE 151 >gi|293364851|ref|ZP_06611568.1| N utilization substance protein B [Streptococcus oralis ATCC 35037] gi|307703100|ref|ZP_07640047.1| transcription antitermination factor NusB [Streptococcus oralis ATCC 35037] gi|315612604|ref|ZP_07887517.1| transcription antitermination factor NusB [Streptococcus sanguinis ATCC 49296] gi|322374852|ref|ZP_08049366.1| transcription antitermination factor NusB [Streptococcus sp. C300] gi|331266955|ref|YP_004326585.1| transcription antitermination protein NusB [Streptococcus oralis Uo5] gi|291316301|gb|EFE56737.1| N utilization substance protein B [Streptococcus oralis ATCC 35037] gi|307623493|gb|EFO02483.1| transcription antitermination factor NusB [Streptococcus oralis ATCC 35037] gi|315315585|gb|EFU63624.1| transcription antitermination factor NusB [Streptococcus sanguinis ATCC 49296] gi|321280352|gb|EFX57391.1| transcription antitermination factor NusB [Streptococcus sp. C300] gi|326683627|emb|CBZ01245.1| transcription antitermination protein NusB [Streptococcus oralis Uo5] Length = 140 Score = 136 bits (344), Expect = 8e-31, Method: Composition-based stats. Identities = 36/143 (25%), Positives = 62/143 (43%), Gaps = 11/143 (7%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 R R A QAL ++ G RF + + V L + ++ G Sbjct: 9 RRQLRKCAFQALMSLEF-GTDVET------ACRFAYTHDREDTDVQLPA---FLTELVSG 58 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135 V +K+ +D I+ L W+ RL ++ ++LR GV E+ P V ++E + +A Sbjct: 59 VQAKKEELDKQITQHLKAGWTIERLTLVERNLLRLGVFEITSF-DTPQLVAVNEAIELAK 117 Query: 136 DFFYGDEPKFINAVLDKVSRKEE 158 DF +FIN +L + +E+ Sbjct: 118 DFSDQKSARFINGLLSQFVTEEQ 140 >gi|223043157|ref|ZP_03613204.1| transcription antitermination factor NusB [Staphylococcus capitis SK14] gi|314933698|ref|ZP_07841063.1| transcription antitermination factor NusB [Staphylococcus caprae C87] gi|222443368|gb|EEE49466.1| transcription antitermination factor NusB [Staphylococcus capitis SK14] gi|313653848|gb|EFS17605.1| transcription antitermination factor NusB [Staphylococcus caprae C87] Length = 129 Score = 136 bits (344), Expect = 8e-31, Method: Composition-based stats. Identities = 38/138 (27%), Positives = 59/138 (42%), Gaps = 13/138 (9%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 R +R+ A Q L+Q+++ +S E F D Y +D ++ ++ G Sbjct: 3 RKESRIQAFQTLFQLEMKESD----LSITEAINFIKD-------DYPDLDFDFINWLVTG 51 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135 V D + +D L + WS RL ILR E++ P +VII+E V + Sbjct: 52 VKDHEAVLDEKFKPYL-KDWSIERLLKSDRIILRMATFEMLHS-DTPEKVIINEAVELTK 109 Query: 136 DFFYGDEPKFINAVLDKV 153 F KFIN VL + Sbjct: 110 QFSDDGHYKFINGVLSNI 127 >gi|262196667|ref|YP_003267876.1| NusB antitermination factor [Haliangium ochraceum DSM 14365] gi|262080014|gb|ACY15983.1| NusB antitermination factor [Haliangium ochraceum DSM 14365] Length = 150 Score = 136 bits (344), Expect = 8e-31, Method: Composition-based stats. Identities = 41/156 (26%), Positives = 71/156 (45%), Gaps = 12/156 (7%) Query: 10 LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF 69 +K+ RR AR A+Q LY +D+ E Y D +D E+ ++ Sbjct: 1 MKVGARRR-ARSYALQVLYALDLN--PLEEPTRALLEYAGRFDLRIDEEAG------DFA 51 Query: 70 RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISE 129 R +I V + ID I + + W R+ + ++LR V EL + V+I+E Sbjct: 52 RSLIEQVYPHLERIDERIQTA-SRNWRIERMSRVDRNVLRLAVGELSQPDGAAARVVINE 110 Query: 130 YVCIAHDFFYGDEPKFINAVLDKV--SRKEEIKRSG 163 V +A F + P F+N +LD+V ++++ +G Sbjct: 111 AVELAKRFGTTESPAFVNGILDRVDQHKRDDANPNG 146 >gi|145630810|ref|ZP_01786588.1| transcription antitermination protein NusB [Haemophilus influenzae R3021] gi|144983692|gb|EDJ91152.1| transcription antitermination protein NusB [Haemophilus influenzae R3021] Length = 121 Score = 136 bits (344), Expect = 8e-31, Method: Composition-based stats. Identities = 36/127 (28%), Positives = 60/127 (47%), Gaps = 13/127 (10%) Query: 28 YQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLI 87 Y + G + ++ F D ++D VD +FR + ++ + +D I Sbjct: 2 YSWAVSGNTAEQV-----ELAFVLDQDMDG------VDKPYFRKLFRQTIENIETVDFSI 50 Query: 88 SSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFIN 147 S + +F LD I +ILR V EL VP +V+I+E + +A F + K+IN Sbjct: 51 SPYIDR--AFDELDPIETAILRLAVYELRFELDVPYKVVINEAIEVAKVFGADESHKYIN 108 Query: 148 AVLDKVS 154 VLDK++ Sbjct: 109 GVLDKIA 115 >gi|291542871|emb|CBL15981.1| transcription antitermination factor NusB [Ruminococcus bromii L2-63] Length = 164 Score = 136 bits (344), Expect = 8e-31, Method: Composition-based stats. Identities = 36/141 (25%), Positives = 63/141 (44%), Gaps = 14/141 (9%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 R +R A L+ E I D +++ + + ++ G Sbjct: 31 RSESREQAFMLLFSKSFDDEPLEETID-------------DNSEMFVGGVCAYAQAVVSG 77 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135 + D+ + ID +I+S L + W+ SR+ +ILR + E+ +VP V I+E V +A Sbjct: 78 IEDKHEEIDEIIASHLKKGWTLSRISKPSLAILRLAIYEMKYLDNVPQSVSINEAVELAK 137 Query: 136 DFFYGDEPKFINAVLDKVSRK 156 + DE KF+N +L SR+ Sbjct: 138 KY-TIDESKFVNGILGTYSRE 157 >gi|329903611|ref|ZP_08273569.1| Transcription termination protein NusB [Oxalobacteraceae bacterium IMCC9480] gi|327548271|gb|EGF32966.1| Transcription termination protein NusB [Oxalobacteraceae bacterium IMCC9480] Length = 157 Score = 136 bits (344), Expect = 9e-31, Method: Composition-based stats. Identities = 40/157 (25%), Positives = 63/157 (40%), Gaps = 16/157 (10%) Query: 9 DLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEW 68 K R +R A+Q LYQ + I + L + D Sbjct: 11 PNKSRTPRHRSREFALQGLYQWLLNNEDAGVIEA-----------HLREAHGFDKADAVH 59 Query: 69 FRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIIS 128 F +++G + + + + + S+L I +IL G EL +P +VII+ Sbjct: 60 FDALLYGTIKQADALRTDLLPLIDR--PLSQLSPIEHAILLIGAYELKNHIEIPYKVIIN 117 Query: 129 EYVCIAHDFFYGDEPKFINAVLDKVS---RKEEIKRS 162 E V +A F D K++N VLDK + R+ EI S Sbjct: 118 ESVELAKSFGGIDGHKYVNGVLDKFAAKTREVEIAAS 154 >gi|55821710|ref|YP_140152.1| transcription antitermination protein NusB [Streptococcus thermophilus LMG 18311] gi|55823630|ref|YP_142071.1| transcription antitermination protein NusB [Streptococcus thermophilus CNRZ1066] gi|116628433|ref|YP_821052.1| transcription antitermination protein NusB [Streptococcus thermophilus LMD-9] gi|81558964|sp|Q5LY62|NUSB_STRT1 RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|81560152|sp|Q5M2R7|NUSB_STRT2 RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|122266972|sp|Q03IW6|NUSB_STRTD RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|55737695|gb|AAV61337.1| transcriptional termination factor [Streptococcus thermophilus LMG 18311] gi|55739615|gb|AAV63256.1| transcriptional termination factor [Streptococcus thermophilus CNRZ1066] gi|116101710|gb|ABJ66856.1| Transcription termination factor [Streptococcus thermophilus LMD-9] gi|312279051|gb|ADQ63708.1| Transcription antitermination factor NusB [Streptococcus thermophilus ND03] Length = 144 Score = 136 bits (344), Expect = 9e-31, Method: Composition-based stats. Identities = 41/143 (28%), Positives = 62/143 (43%), Gaps = 9/143 (6%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLE-WFRVIIH 74 R R A Q L+ ++ G + + + + D +D E VDL + ++ Sbjct: 9 RRDLRERAFQTLFALEFGGEALDQA-----YFAYTYDKPIDEE---TEVDLPSFLLSLVT 60 Query: 75 GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134 GV + +D I L E WS SRL M ++LR G+ E+ P V I+E + IA Sbjct: 61 GVREELPQLDSQIEEKLKEGWSLSRLIMTDRTLLRLGLYEITSFEETPGRVAINEIIEIA 120 Query: 135 HDFFYGDEPKFINAVLDKVSRKE 157 + KFIN VL + E Sbjct: 121 KKYSDKTSAKFINGVLSQFVTDE 143 >gi|326390202|ref|ZP_08211763.1| NusB antitermination factor [Thermoanaerobacter ethanolicus JW 200] gi|325993850|gb|EGD52281.1| NusB antitermination factor [Thermoanaerobacter ethanolicus JW 200] Length = 140 Score = 136 bits (343), Expect = 1e-30, Method: Composition-based stats. Identities = 34/148 (22%), Positives = 63/148 (42%), Gaps = 14/148 (9%) Query: 15 RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74 R AR V+ LYQ D+ ++I + + + E+ + Sbjct: 2 NRTEAREWIVKMLYQYDVSRLPISKIFENFYKENDPGEQK------------EYIENTVI 49 Query: 75 GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134 G ++ + ID I ++ W+ +R+ I +ILR + E+ ++PV + I+E V IA Sbjct: 50 GAIEHLEEIDKEIERY-SQNWALNRMPKIDLAILRCSIYEMQYG-NIPVNISINEAVEIA 107 Query: 135 HDFFYGDEPKFINAVLDKVSRKEEIKRS 162 + D FIN +L R + ++ Sbjct: 108 KKYSTEDSHVFINGLLGAFVRDKGLEEG 135 >gi|323699091|ref|ZP_08111003.1| NusB antitermination factor [Desulfovibrio sp. ND132] gi|323459023|gb|EGB14888.1| NusB antitermination factor [Desulfovibrio desulfuricans ND132] Length = 149 Score = 136 bits (343), Expect = 1e-30, Method: Composition-based stats. Identities = 32/140 (22%), Positives = 54/140 (38%), Gaps = 8/140 (5%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 R + R A Q LY + D V + R ++ G Sbjct: 13 RRVGRTLAFQVLYSTHFLDK------ENPLDMDTLFDLNPMVVEQESETARAFARDLVRG 66 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135 V ID I ++ W R+ M+ SILR + E++ +PV+ I+E + ++ Sbjct: 67 VSVNLHDIDRTIEEH-SQHWKIERIAMVELSILRLSLYEMLFT-DIPVKAAINEAIELSK 124 Query: 136 DFFYGDEPKFINAVLDKVSR 155 F F+N +LD V++ Sbjct: 125 TFGDDKSRSFVNGILDGVAK 144 >gi|163793217|ref|ZP_02187193.1| NusB antitermination factor [alpha proteobacterium BAL199] gi|159181863|gb|EDP66375.1| NusB antitermination factor [alpha proteobacterium BAL199] Length = 139 Score = 136 bits (343), Expect = 1e-30, Method: Composition-based stats. Identities = 43/126 (34%), Positives = 68/126 (53%), Gaps = 3/126 (2%) Query: 30 IDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISS 89 +++ G S E++ E+ RF E D ++F ++ GV +D +++ Sbjct: 1 MEVSGKSGHEVVPEFVGRRFAGLIEG---GDMAPADPKFFERLVLGVAGEMPTLDGMLAD 57 Query: 90 CLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAV 149 CL + RL+++L +I R G EL+ VPV V+ISEYV + H FF G EP +N V Sbjct: 58 CLQPEGHLERLEVVLRAIFRLGTYELLSVDDVPVRVVISEYVDLTHAFFAGREPGLVNGV 117 Query: 150 LDKVSR 155 LDK++R Sbjct: 118 LDKIAR 123 >gi|294788786|ref|ZP_06754027.1| transcription antitermination factor NusB [Simonsiella muelleri ATCC 29453] gi|294483268|gb|EFG30954.1| transcription antitermination factor NusB [Simonsiella muelleri ATCC 29453] Length = 156 Score = 136 bits (343), Expect = 1e-30, Method: Composition-based stats. Identities = 39/149 (26%), Positives = 61/149 (40%), Gaps = 14/149 (9%) Query: 6 NKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVD 65 +K L S RR AR VQALYQ + EI + + + + D Sbjct: 2 TEKKLHKSPRRR-AREFVVQALYQAALNQKPAPEIANFLREH-----------TDFKRAD 49 Query: 66 LEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEV 125 E F + G ++ +LI L ++ I +IL EL P V Sbjct: 50 AELFDALFFGTNANQRAYMMLIRPHLDRDEKL--INPIERAILLMATHELKTMPETPHAV 107 Query: 126 IISEYVCIAHDFFYGDEPKFINAVLDKVS 154 +I+E + + F D KF+N++LDK++ Sbjct: 108 VINEAIEVTKTFGGTDSHKFVNSILDKLA 136 >gi|332286886|ref|YP_004418797.1| transcription antitermination protein NusB [Pusillimonas sp. T7-7] gi|330430839|gb|AEC22173.1| transcription antitermination protein NusB [Pusillimonas sp. T7-7] Length = 166 Score = 136 bits (343), Expect = 1e-30, Method: Composition-based stats. Identities = 36/147 (24%), Positives = 63/147 (42%), Gaps = 12/147 (8%) Query: 21 LAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRK 80 A+Q +Y + G + + E + + + + + D WF+ ++HGV+ Sbjct: 28 EFALQGVYAWLLRGDAGLQEAGEIDAH-------IRDDEEFHDADATWFKTLLHGVLREA 80 Query: 81 QHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYG 140 + + L I IL G EL+ VP +V I+E V +A F Sbjct: 81 PALRERFMPHVDR--PLEELSPIEHGILLIGSYELVHHIEVPYKVAINEAVELAKSFGGT 138 Query: 141 DEPKFINAVLDKVS---RKEEIKRSGC 164 D KF+N VLDK++ R +E++ + Sbjct: 139 DGFKFVNGVLDKMAADVRSQEVQAAAR 165 >gi|203287574|ref|YP_002222589.1| N-utilization substance protein B [Borrelia recurrentis A1] gi|201084794|gb|ACH94368.1| N-utilization substance protein B [Borrelia recurrentis A1] Length = 146 Score = 136 bits (343), Expect = 1e-30, Method: Composition-based stats. Identities = 41/144 (28%), Positives = 67/144 (46%), Gaps = 10/144 (6%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 R AR+ A Q +Y ID+ + I + D + D++ ++ V+++G Sbjct: 6 RHKARILAFQKIYSIDVNCKAKDNIFDIFSFEENGIDLDGDLKL--------FYSVLVNG 57 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECH-SVPVEVIISEYVCIA 134 D + ID LIS ++ W R+D + +ILR V L VP VII E + IA Sbjct: 58 TYDNLESIDKLISG-ISLNWRLDRMDKVDLAILRMSVYSLKFQDLDVPKRVIIDEAILIA 116 Query: 135 HDFFYGDEPKFINAVLDKVSRKEE 158 + + KF+N +LD + + E Sbjct: 117 KKYGNKNSDKFVNGILDALLKDME 140 >gi|313884728|ref|ZP_07818484.1| transcription antitermination factor NusB [Eremococcus coleocola ACS-139-V-Col8] gi|312620096|gb|EFR31529.1| transcription antitermination factor NusB [Eremococcus coleocola ACS-139-V-Col8] Length = 158 Score = 136 bits (343), Expect = 1e-30, Method: Composition-based stats. Identities = 38/139 (27%), Positives = 62/139 (44%), Gaps = 7/139 (5%) Query: 14 HRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVII 73 R AR AVQALY D + + + F ++ + Y V ++ +++ Sbjct: 6 ENRSQARQVAVQALY--DYTHFESNNDLDQ--ALDFALESGHFPDQGYDEVANDYLYLLL 61 Query: 74 HGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECH--SVPVEVIISEYV 131 +GV+D ID I L + W+ +R+ I +ILR EL+ VP V + E + Sbjct: 62 NGVVDHLSEIDAHIEKYL-KNWTLARIARIDLNILRVAFFELLYMDKEDVPARVTVDEAI 120 Query: 132 CIAHDFFYGDEPKFINAVL 150 ++ F +FIN VL Sbjct: 121 ELSKFFSDDKSRQFINGVL 139 >gi|152991103|ref|YP_001356825.1| transcription antitermination protein NusB [Nitratiruptor sp. SB155-2] gi|166215704|sp|A6Q4Q9|NUSB_NITSB RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|151422964|dbj|BAF70468.1| transcription antitermination factor NusB [Nitratiruptor sp. SB155-2] Length = 139 Score = 136 bits (343), Expect = 1e-30, Method: Composition-based stats. Identities = 36/143 (25%), Positives = 60/143 (41%), Gaps = 13/143 (9%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 R AR A + LY D+ + + + + + E+ + G Sbjct: 4 RHQAREAVIGLLYAYDLGNPEIKKFAEDILEEKKIRNKQ-----------REFALALFKG 52 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135 ++ ID +I L E W R+ I +ILR GV EL + ++I+E V +A Sbjct: 53 TVEHLDTIDEMIKKHL-ESWDMERVGHIERAILRLGVYELFYT-DLDPAIVINEAVELAK 110 Query: 136 DFFYGDEPKFINAVLDKVSRKEE 158 PKFIN VLD ++++ + Sbjct: 111 KLGTDQSPKFINGVLDAIAKEVK 133 >gi|302380357|ref|ZP_07268827.1| transcription antitermination factor NusB [Finegoldia magna ACS-171-V-Col3] gi|302311847|gb|EFK93858.1| transcription antitermination factor NusB [Finegoldia magna ACS-171-V-Col3] Length = 137 Score = 136 bits (343), Expect = 1e-30, Method: Composition-based stats. Identities = 36/143 (25%), Positives = 72/143 (50%), Gaps = 12/143 (8%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 R +R +A+Q +Y++++ + I E+ Y+ D+E+F+ I+ Sbjct: 3 RRQSRKSAMQLIYEMNMNEDYDKQRIEEFCKYQNIN-----------KNDIEFFKEIVLN 51 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135 ++ I +I + T++W+ R++ + SIL+ GV E++ S P V I+E V +A Sbjct: 52 FIEHIDDIVNIIENN-TKQWNLDRINKLDLSILQVGVCEILYVESTPDSVAINEAVELAK 110 Query: 136 DFFYGDEPKFINAVLDKVSRKEE 158 ++ FIN +L V +++E Sbjct: 111 EYSTEKSYSFINGILGSVLKRKE 133 >gi|320547470|ref|ZP_08041756.1| transcription antitermination factor NusB [Streptococcus equinus ATCC 9812] gi|320447815|gb|EFW88572.1| transcription antitermination factor NusB [Streptococcus equinus ATCC 9812] Length = 142 Score = 136 bits (343), Expect = 1e-30, Method: Composition-based stats. Identities = 32/144 (22%), Positives = 56/144 (38%), Gaps = 7/144 (4%) Query: 11 KLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFR 70 ++ R R A QAL+ ++ F + +E + Sbjct: 4 NFTNSRRDLRERAFQALFSLEF-------DREYLAAAEFAYTYDKTIEEDEDVQVPVFLL 56 Query: 71 VIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEY 130 ++ GV D + +D I + L WS RL + S+LR G+ E+ P V ++E Sbjct: 57 NLVKGVCDMQAELDQQIEAHLKAGWSLERLTLTDKSLLRLGLYEVRYFEETPGRVAVNEI 116 Query: 131 VCIAHDFFYGDEPKFINAVLDKVS 154 + IA + KF+N +L + Sbjct: 117 IEIAKKYSDETSAKFVNGLLSQFV 140 >gi|34580842|ref|ZP_00142322.1| N utilization substance protein B [Rickettsia sibirica 246] gi|229586404|ref|YP_002844905.1| transcription antitermination protein NusB [Rickettsia africae ESF-5] gi|259514889|sp|C3PMK2|NUSB_RICAE RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|28262227|gb|EAA25731.1| N utilization substance protein B [Rickettsia sibirica 246] gi|228021454|gb|ACP53162.1| N utilization substance protein B [Rickettsia africae ESF-5] Length = 156 Score = 136 bits (343), Expect = 1e-30, Method: Composition-based stats. Identities = 41/145 (28%), Positives = 84/145 (57%), Gaps = 2/145 (1%) Query: 14 HRRGIARLAAVQALYQ-IDIIGCSTTEIISEYETYRFCADTELD-VESVYLHVDLEWFRV 71 +++ IAR+AAVQA+YQ I +I+ ++ ++ D E++ + + + F++ Sbjct: 7 NKKSIARIAAVQAIYQNILQNNDDMDDIMQNVLSFYQNNNSITDLPENLKISLSISHFKM 66 Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131 ++ V + +D +I + LT + + ++L ++LR + EL+ C + P +V+I+EY Sbjct: 67 LVKSVFENIHKLDEIIDNHLTNDKDPAHMPILLRALLRVSICELLFCPTTPAKVVINEYT 126 Query: 132 CIAHDFFYGDEPKFINAVLDKVSRK 156 IA+D E F+N+VLDK++++ Sbjct: 127 DIANDMLNEHEIGFVNSVLDKIAKE 151 >gi|325693662|gb|EGD35581.1| N utilization substance protein B [Streptococcus sanguinis SK150] Length = 143 Score = 136 bits (343), Expect = 1e-30, Method: Composition-based stats. Identities = 34/138 (24%), Positives = 62/138 (44%), Gaps = 6/138 (4%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 R R A QAL ++ G + E + + D + D ++ + ++ G Sbjct: 9 RRGLRQRAFQALMSLEYEGD-----LVEACRFAYSYDKDEDADNAAEADIPAFLLNLVSG 63 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135 V+ K +D I+ L + W+ RL ++ +ILR G+ E+ E P V ++E + ++ Sbjct: 64 VVQSKDDLDKKIAQHLKKGWTVDRLTLVEKNILRLGIFEITEF-DTPQLVAVNEAIELSK 122 Query: 136 DFFYGDEPKFINAVLDKV 153 F KFIN +L + Sbjct: 123 QFSDEKSSKFINGILSQF 140 >gi|328947375|ref|YP_004364712.1| NusB antitermination factor [Treponema succinifaciens DSM 2489] gi|328447699|gb|AEB13415.1| NusB antitermination factor [Treponema succinifaciens DSM 2489] Length = 161 Score = 136 bits (343), Expect = 1e-30, Method: Composition-based stats. Identities = 45/160 (28%), Positives = 76/160 (47%), Gaps = 21/160 (13%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYL------------- 62 R R+ AVQALY D+ S +++ + D+E + ++ Sbjct: 3 RRNGRIFAVQALYSYDVGKASLEDLL---KLEWLKEDSENNPSGKFVLPETVTETSETED 59 Query: 63 -----HVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIE 117 ++ R++I G ++ Q ID I + LT W+F RL+ + SILR V L+ Sbjct: 60 FSQSRAESYDFARLLISGTINHIQEIDEKIKAHLTANWNFDRLNRVTLSILRISVFALLY 119 Query: 118 CHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKE 157 + +II E + I+ +F D +FINA+LD +S++E Sbjct: 120 QKELKPTIIIDEAIAISKEFGTDDSFRFINAILDTISKEE 159 >gi|34497846|ref|NP_902061.1| transcription antitermination protein NusB [Chromobacterium violaceum ATCC 12472] gi|39931749|sp|Q7NVF2|NUSB_CHRVO RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|34103702|gb|AAQ60063.1| N utilization substance protein B [Chromobacterium violaceum ATCC 12472] Length = 149 Score = 136 bits (343), Expect = 1e-30, Method: Composition-based stats. Identities = 36/147 (24%), Positives = 62/147 (42%), Gaps = 14/147 (9%) Query: 10 LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF 69 +K + RR AR AVQ +Y+ ++ +I + L + D F Sbjct: 1 MKTARRR--AREFAVQGIYEWELNPDRPASLI----------EKHLRENEYFAKADEALF 48 Query: 70 RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISE 129 R I++GV+ + + + + + ++L LEL + P VII+E Sbjct: 49 RSILYGVLKDVELLSAQVGRYYERAE--DEVSPVERAVLLMAALELTQSPETPYPVIINE 106 Query: 130 YVCIAHDFFYGDEPKFINAVLDKVSRK 156 + I F D KF+N VLDK++ + Sbjct: 107 AIEITKTFGGTDGHKFVNGVLDKLAAE 133 >gi|15892127|ref|NP_359841.1| transcription antitermination protein NusB [Rickettsia conorii str. Malish 7] gi|20139047|sp|Q92J65|NUSB_RICCN RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|15619255|gb|AAL02742.1| N utilization substance protein B [Rickettsia conorii str. Malish 7] Length = 156 Score = 136 bits (343), Expect = 1e-30, Method: Composition-based stats. Identities = 41/145 (28%), Positives = 83/145 (57%), Gaps = 2/145 (1%) Query: 14 HRRGIARLAAVQALYQ-IDIIGCSTTEIISEYETYRFCADTELD-VESVYLHVDLEWFRV 71 +++ IAR+AAVQA+YQ I +I+ ++ + D E++ + + + F++ Sbjct: 7 NKKSIARIAAVQAIYQNILQNNDDMDDIMQNVLSFYQNNNAITDLPENLKISLSISHFKM 66 Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131 ++ V + +D +I + LT + + ++L ++LR + EL+ C + P +V+I+EY Sbjct: 67 LVKSVFENIHKLDEIIDNHLTNDKDPAHMPILLRALLRVSICELLFCPTTPAKVVINEYT 126 Query: 132 CIAHDFFYGDEPKFINAVLDKVSRK 156 IA+D E F+N+VLDK++++ Sbjct: 127 DIANDMLNEHEIGFVNSVLDKIAKE 151 >gi|67459511|ref|YP_247135.1| transcription antitermination protein NusB [Rickettsia felis URRWXCal2] gi|75536082|sp|Q4UKG1|NUSB_RICFE RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|67005044|gb|AAY61970.1| N utilization substance protein B [Rickettsia felis URRWXCal2] Length = 156 Score = 135 bits (342), Expect = 1e-30, Method: Composition-based stats. Identities = 40/147 (27%), Positives = 82/147 (55%), Gaps = 2/147 (1%) Query: 14 HRRGIARLAAVQALYQIDIIGCSTTEIISE--YETYRFCADTELDVESVYLHVDLEWFRV 71 +++ IAR+AAVQA+YQ + + I + Y+ T E++ + + + F++ Sbjct: 7 NKKSIARIAAVQAIYQNILQNNDDMDDIMQNVLSFYQNNNSTTALPENLKISLSISHFKM 66 Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131 ++ V + +D +I + LT + + ++L ++LR + EL+ C + P +V+I+EY Sbjct: 67 LVKSVFENINKLDEIIDNHLTNDKDPAHMPILLRALLRVSICELLFCPTTPAKVVINEYT 126 Query: 132 CIAHDFFYGDEPKFINAVLDKVSRKEE 158 IA+D E F+N++LDK++++ Sbjct: 127 DIANDMLNEHEIGFVNSILDKIAQENN 153 >gi|332363255|gb|EGJ41040.1| N utilization substance protein B [Streptococcus sanguinis SK49] Length = 143 Score = 135 bits (342), Expect = 1e-30, Method: Composition-based stats. Identities = 35/138 (25%), Positives = 62/138 (44%), Gaps = 6/138 (4%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 R R A QAL ++ G + E + + D + D + V + ++ G Sbjct: 9 RRGLRQRAFQALMSLEYEGD-----LVEACRFAYSYDKDEDADKVAEADIPAFLLNLVSG 63 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135 V+ K +D I+ L + W+ RL ++ +ILR G+ E+ E P V ++E + ++ Sbjct: 64 VVQSKDDLDKKIAQHLKKGWTVDRLTLVEKNILRLGIFEITEF-DTPQLVAVNEAIELSK 122 Query: 136 DFFYGDEPKFINAVLDKV 153 F KFIN +L + Sbjct: 123 QFSDEKSSKFINGILSQF 140 >gi|301059426|ref|ZP_07200347.1| leucine--tRNA ligase [delta proteobacterium NaphS2] gi|300446462|gb|EFK10306.1| leucine--tRNA ligase [delta proteobacterium NaphS2] Length = 1011 Score = 135 bits (342), Expect = 1e-30, Method: Composition-based stats. Identities = 30/132 (22%), Positives = 54/132 (40%), Gaps = 12/132 (9%) Query: 22 AAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQ 81 A+Q L+ ++ E R ++ + + R ++ GV RK Sbjct: 1 MALQVLFHLEYSDDDPLE------ACRLISEN-----FEMAEASVAFSRDLVSGVCQRKT 49 Query: 82 HIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGD 141 +D +I ++ W R+ + SILR E++ +P V + E V + F D Sbjct: 50 ILDRVIGRS-SKHWRLERMARLDRSILRLATYEMLYLEDIPPRVSLDEAVELGKRFGSED 108 Query: 142 EPKFINAVLDKV 153 ++IN VLD + Sbjct: 109 SGRYINGVLDNI 120 >gi|239618474|ref|YP_002941796.1| NusB antitermination factor [Kosmotoga olearia TBF 19.5.1] gi|239507305|gb|ACR80792.1| NusB antitermination factor [Kosmotoga olearia TBF 19.5.1] Length = 148 Score = 135 bits (342), Expect = 1e-30, Method: Composition-based stats. Identities = 44/152 (28%), Positives = 74/152 (48%), Gaps = 12/152 (7%) Query: 13 SHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVI 72 + +R R ++++Q D EY R A LD ES + Sbjct: 6 TGQRRKIREIVFRSIFQYDFHKDFP--AAMEYLE-RETAFYSLDKESKNR------AKGY 56 Query: 73 IHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVC 132 + G+++ ID +I++ L + W+F RL I S+LR EL+ VP+EV ++E + Sbjct: 57 LMGIIEHLDEIDSIITAYL-KNWTFDRLASIDRSVLRLATYELLYVDDVPIEVTLNEAIE 115 Query: 133 IAHDFFYGDEPKFINAVLDKVSRKE--EIKRS 162 I + +E KF+N VLDK++++ E KR+ Sbjct: 116 ITKKYGSQEEGKFVNGVLDKIAKERVSEEKRA 147 >gi|203284032|ref|YP_002221772.1| N-utilization substance protein B [Borrelia duttonii Ly] gi|201083475|gb|ACH93066.1| N-utilization substance protein B [Borrelia duttonii Ly] Length = 146 Score = 135 bits (342), Expect = 1e-30, Method: Composition-based stats. Identities = 41/144 (28%), Positives = 67/144 (46%), Gaps = 10/144 (6%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 R AR+ A Q +Y ID+ + I + D + D++ ++ V+++G Sbjct: 6 RHKARVLAFQKIYSIDVNCKAKDNIFDIFSFEENGIDLDGDLKL--------FYSVLVNG 57 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECH-SVPVEVIISEYVCIA 134 D + ID LIS ++ W R+D + +ILR V L VP VII E + IA Sbjct: 58 TYDNLESIDKLISG-ISLNWRLDRMDKVDLAILRMSVYSLKFQDLDVPKRVIIDEAILIA 116 Query: 135 HDFFYGDEPKFINAVLDKVSRKEE 158 + + KF+N +LD + + E Sbjct: 117 KKYGNKNSDKFVNGILDALLKDME 140 >gi|148544409|ref|YP_001271779.1| transcription antitermination protein NusB [Lactobacillus reuteri DSM 20016] gi|184153772|ref|YP_001842113.1| transcription antitermination protein NusB [Lactobacillus reuteri JCM 1112] gi|166918809|sp|A5VKR8|NUSB_LACRD RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|229620058|sp|B2G851|NUSB_LACRJ RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|148531443|gb|ABQ83442.1| NusB antitermination factor [Lactobacillus reuteri DSM 20016] gi|183225116|dbj|BAG25633.1| transcription termination factor [Lactobacillus reuteri JCM 1112] Length = 138 Score = 135 bits (342), Expect = 1e-30, Method: Composition-based stats. Identities = 34/150 (22%), Positives = 61/150 (40%), Gaps = 12/150 (8%) Query: 12 LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71 +S R + R A Q L+ + S +I + YE + ++ + Sbjct: 1 MSLNRHMIREEAFQVLFALQ--SDSEADIQTVYEAIPHHDEKQIP----------PYLLT 48 Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131 +++GV + + +D I+ L W+ +RL ILR + E+ +VP V I+E + Sbjct: 49 LVNGVREHQDQLDEQINDLLASGWTINRLAKPDLVILRLALFEIQYAENVPTVVAINEAL 108 Query: 132 CIAHDFFYGDEPKFINAVLDKVSRKEEIKR 161 + F KFIN L K ++ Sbjct: 109 ELTKTFSSDKSRKFINGALGKFEKQVNENN 138 >gi|325697632|gb|EGD39517.1| N utilization substance protein B [Streptococcus sanguinis SK160] Length = 143 Score = 135 bits (342), Expect = 2e-30, Method: Composition-based stats. Identities = 35/138 (25%), Positives = 62/138 (44%), Gaps = 6/138 (4%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 R R A QAL ++ G + E + + D + + + V + ++ G Sbjct: 9 RRGLRQRAFQALMSLEYEGD-----LVEACRFAYSYDKDEEADKVAEADIPAFLLNLVSG 63 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135 V+ K +D I+ L + W+ RL ++ +ILR G+ E+ E P V ++E + ++ Sbjct: 64 VVQSKDDLDKKIAQHLKKGWTVDRLTLVEKNILRLGIFEITEF-DTPQLVAVNEAIELSK 122 Query: 136 DFFYGDEPKFINAVLDKV 153 F KFIN +L K Sbjct: 123 QFSDEKSSKFINGILSKF 140 >gi|269795098|ref|YP_003314553.1| NusB antitermination factor [Sanguibacter keddieii DSM 10542] gi|269097283|gb|ACZ21719.1| NusB antitermination factor [Sanguibacter keddieii DSM 10542] Length = 138 Score = 135 bits (342), Expect = 2e-30, Method: Composition-based stats. Identities = 30/138 (21%), Positives = 60/138 (43%), Gaps = 12/138 (8%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 R AR A+ L++ + ++++ E ++ I+ G Sbjct: 4 RTKARKRALDVLFEAEQRHLDPITLLADRVA-----------EPGTEASLPQYSVDIVEG 52 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135 V+++ ID L+ + + +WS R+ + ++LR G E++ VP V I E V ++ Sbjct: 53 VLEQLDRIDELLETY-SHEWSLDRMPAVDRALLRIGTWEILFNDEVPDAVAIDEAVELSR 111 Query: 136 DFFYGDEPKFINAVLDKV 153 D P F+N +L ++ Sbjct: 112 SLSTDDSPVFVNGLLGRI 129 >gi|119952909|ref|YP_945118.1| transcription antitermination protein NusB [Borrelia turicatae 91E135] gi|119861680|gb|AAX17448.1| N utilization substance protein B [Borrelia turicatae 91E135] Length = 146 Score = 135 bits (342), Expect = 2e-30, Method: Composition-based stats. Identities = 41/144 (28%), Positives = 68/144 (47%), Gaps = 10/144 (6%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 R AR+ A Q +Y IDI + I + + E +++ ++ V+++G Sbjct: 6 RHKARVLAFQKIYSIDINCKAKDNIYDIFNLEDHGLELEENLKL--------FYSVLVNG 57 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECH-SVPVEVIISEYVCIA 134 D + ID LIS ++ W R+D + +ILR V L + VP VII E + IA Sbjct: 58 TYDNLEFIDKLISD-ISLNWRLDRMDKVDLAILRMSVYSLKFQNLDVPKRVIIDEAILIA 116 Query: 135 HDFFYGDEPKFINAVLDKVSRKEE 158 + + KF+N +LD + + E Sbjct: 117 KKYGSKNSYKFVNGILDALLKNME 140 >gi|294670752|ref|ZP_06735614.1| hypothetical protein NEIELOOT_02461 [Neisseria elongata subsp. glycolytica ATCC 29315] gi|291307540|gb|EFE48783.1| hypothetical protein NEIELOOT_02461 [Neisseria elongata subsp. glycolytica ATCC 29315] Length = 143 Score = 135 bits (342), Expect = 2e-30, Method: Composition-based stats. Identities = 43/156 (27%), Positives = 60/156 (38%), Gaps = 17/156 (10%) Query: 10 LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF 69 +K S RR AR VQALYQ + S EI + + + D + F Sbjct: 1 MKTSPRRR-AREFTVQALYQAALNHASAPEIA-----------KNIREAADFKRADADLF 48 Query: 70 RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISE 129 + G +I L ++ I IL EL P VII+E Sbjct: 49 TALFFGAHGNSAEYMQIIRPLLDRDEK--DINPIERGILLMACHELSAMPETPYPVIINE 106 Query: 130 YVCIAHDFFYGDEPKFINAVLDKVS---RKEEIKRS 162 + + F D KFIN +LDK+S R + KR+ Sbjct: 107 AIEVTKTFGGTDSHKFINGILDKLSVQLRPNDPKRA 142 >gi|194466519|ref|ZP_03072506.1| NusB antitermination factor [Lactobacillus reuteri 100-23] gi|194453555|gb|EDX42452.1| NusB antitermination factor [Lactobacillus reuteri 100-23] Length = 138 Score = 135 bits (342), Expect = 2e-30, Method: Composition-based stats. Identities = 33/150 (22%), Positives = 60/150 (40%), Gaps = 12/150 (8%) Query: 12 LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71 +S R + R A Q L+ + +I + YE + ++ + Sbjct: 1 MSLNRHMIREEAFQVLFALQ--SDPEADIQTVYEAIPHHDEKQIP----------PYLLT 48 Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131 +++GV + + +D I+ L W+ +RL ILR + E+ +VP V I+E + Sbjct: 49 LVNGVREHQDQLDEQINDLLASGWTINRLAKPDLVILRLALFEIQYAENVPTVVAINEAL 108 Query: 132 CIAHDFFYGDEPKFINAVLDKVSRKEEIKR 161 + F KFIN L K ++ Sbjct: 109 ELTKTFSSDKSRKFINGALGKFEKQVNENN 138 >gi|108804294|ref|YP_644231.1| NusB antitermination factor [Rubrobacter xylanophilus DSM 9941] gi|119390815|sp|Q1AW09|NUSB_RUBXD RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|108765537|gb|ABG04419.1| NusB antitermination factor [Rubrobacter xylanophilus DSM 9941] Length = 139 Score = 135 bits (342), Expect = 2e-30, Method: Composition-based stats. Identities = 38/152 (25%), Positives = 65/152 (42%), Gaps = 19/152 (12%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 R AR A LYQ D+ G +I + YR + ++ ++ G Sbjct: 3 RRTARKQAFFILYQSDVTGSPAEPLIGRWRAYRGELE--------------DYAERVVRG 48 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135 V ++ +D ++ ++E W R+ + +ILR + E++ VP EV ++E V +A Sbjct: 49 VERERERLDAVLDG-VSEGWPVWRMSAVDRTILRLALYEMLHVQDVPPEVAVNEAVELAK 107 Query: 136 DFFYGDEPKFINAVL----DKVSRKEEIKRSG 163 F + P F+ VL DK+ K G Sbjct: 108 GFSGEEAPSFVGGVLRGAEDKIFGKVGDGEPG 139 >gi|294648615|ref|ZP_06726078.1| transcription antitermination protein NusB [Acinetobacter haemolyticus ATCC 19194] gi|292825491|gb|EFF84231.1| transcription antitermination protein NusB [Acinetobacter haemolyticus ATCC 19194] Length = 149 Score = 135 bits (341), Expect = 2e-30, Method: Composition-based stats. Identities = 38/135 (28%), Positives = 63/135 (46%), Gaps = 13/135 (9%) Query: 22 AAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQ 81 AVQ +Y+ + EI + VE+ VDL ++ ++ V+ + + Sbjct: 18 FAVQGIYEWQMSQNPVHEIEA-----------RTRVENAMHKVDLNYYHELLTQVVAQHE 66 Query: 82 HIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGD 141 +D L+ L + S LD + + LR G EL + VP V++ E + +A F D Sbjct: 67 ALDELLVPVLDRE--LSALDGVELATLRLGAYELRDHLEVPYRVVLDEAIELAKHFGGAD 124 Query: 142 EPKFINAVLDKVSRK 156 K+IN VLD++S K Sbjct: 125 SHKYINGVLDRLSSK 139 >gi|325107333|ref|YP_004268401.1| NusB antitermination factor [Planctomyces brasiliensis DSM 5305] gi|324967601|gb|ADY58379.1| NusB antitermination factor [Planctomyces brasiliensis DSM 5305] Length = 137 Score = 135 bits (341), Expect = 2e-30, Method: Composition-based stats. Identities = 33/147 (22%), Positives = 63/147 (42%), Gaps = 13/147 (8%) Query: 14 HRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVII 73 +R AR A+Q L+ +D+ + + R + + + + Sbjct: 2 AKRSKARELAMQMLFLVDMNPDIDGKTVLHMIQDRLEDEQQ-----------SRFAWTLF 50 Query: 74 HGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCI 133 G M+ ++ ID IS + + W+ R+ + ++LR G EL P V+I E + + Sbjct: 51 AGTMEHRETIDDRISK-VAKNWTLKRMAVTDRNLLRLGCFELDYH-DTPHTVVIDEIIEL 108 Query: 134 AHDFFYGDEPKFINAVLDKVSRKEEIK 160 A F + F+N +LDK++ + K Sbjct: 109 AKKFGAENSSSFVNGILDKLAGQSHKK 135 >gi|229019401|ref|ZP_04176224.1| N utilization substance protein B [Bacillus cereus AH1273] gi|229025645|ref|ZP_04182051.1| N utilization substance protein B [Bacillus cereus AH1272] gi|229098654|ref|ZP_04229594.1| N utilization substance protein B [Bacillus cereus Rock3-29] gi|229104810|ref|ZP_04235471.1| N utilization substance protein B [Bacillus cereus Rock3-28] gi|229117679|ref|ZP_04247049.1| N utilization substance protein B [Bacillus cereus Rock1-3] gi|228665771|gb|EEL21243.1| N utilization substance protein B [Bacillus cereus Rock1-3] gi|228678683|gb|EEL32899.1| N utilization substance protein B [Bacillus cereus Rock3-28] gi|228684733|gb|EEL38671.1| N utilization substance protein B [Bacillus cereus Rock3-29] gi|228735643|gb|EEL86232.1| N utilization substance protein B [Bacillus cereus AH1272] gi|228741871|gb|EEL92048.1| N utilization substance protein B [Bacillus cereus AH1273] Length = 120 Score = 135 bits (341), Expect = 2e-30, Method: Composition-based stats. Identities = 38/130 (29%), Positives = 58/130 (44%), Gaps = 14/130 (10%) Query: 24 VQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHI 83 +QALYQ+DI G ++ E E + ++ G +D K+ I Sbjct: 1 MQALYQMDITGELEPKVAVENTLDEGEETNE-------------FLESLVVGFVDNKEEI 47 Query: 84 DLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEP 143 D I L +KW R+ ++ SILR V E+ +P V I+E + IA F + Sbjct: 48 DAAIRQNL-KKWKLERISIVDRSILRVAVYEMKYMEEIPHNVTINEAIEIAKTFGDEESR 106 Query: 144 KFINAVLDKV 153 +FIN VL + Sbjct: 107 RFINGVLSNI 116 >gi|307720293|ref|YP_003891433.1| NusB antitermination factor [Sulfurimonas autotrophica DSM 16294] gi|306978386|gb|ADN08421.1| NusB antitermination factor [Sulfurimonas autotrophica DSM 16294] Length = 135 Score = 135 bits (341), Expect = 2e-30, Method: Composition-based stats. Identities = 43/145 (29%), Positives = 65/145 (44%), Gaps = 13/145 (8%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 R AR+A V LY D+ +T+E +E + + + D + + G Sbjct: 4 RQQARMAVVSLLYAYDLGNGNTSEHSNEILEEKKIRNKQKD-----------FALGLYEG 52 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135 VM+ + ID I L E W F RL I + LR E++ + V+I+E V I Sbjct: 53 VMEHIEEIDKAIVEHLKE-WDFERLGAIERATLRLATYEILFG-ELDSAVVINEAVEITK 110 Query: 136 DFFYGDEPKFINAVLDKVSRKEEIK 160 F PKFIN VLD +++ + K Sbjct: 111 SFGTEQSPKFINGVLDAIAKDHKAK 135 >gi|42522647|ref|NP_968027.1| transcription termination factor nusB [Bdellovibrio bacteriovorus HD100] gi|81617954|sp|Q6MNX9|NUSB_BDEBA RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|39575179|emb|CAE79020.1| transcription termination factor nusB [Bdellovibrio bacteriovorus HD100] Length = 135 Score = 135 bits (341), Expect = 2e-30, Method: Composition-based stats. Identities = 41/147 (27%), Positives = 67/147 (45%), Gaps = 15/147 (10%) Query: 10 LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF 69 +KL+ RR AR A+Q L+Q + + Y+T+ + LD E + + Sbjct: 1 MKLTARR-QARELALQVLFQTEFAPQIS------YQTFLEVFEQSLDPEV------ITYA 47 Query: 70 RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHS-VPVEVIIS 128 +I+ GV K+ ID I + W R+ I +ILR V E+ + + I+ Sbjct: 48 DLIVTGVKSNKEAIDSKI-QASSAHWKVERMATIDRNILRIAVYEMRFAADPIKENIAIN 106 Query: 129 EYVCIAHDFFYGDEPKFINAVLDKVSR 155 E V IA + D F+N +LD+V + Sbjct: 107 EAVEIAKKYGTSDSGSFVNGLLDQVGK 133 >gi|226953323|ref|ZP_03823787.1| transcription antitermination protein NusB [Acinetobacter sp. ATCC 27244] gi|262373826|ref|ZP_06067104.1| transcription antitermination factor NusB [Acinetobacter junii SH205] gi|226835949|gb|EEH68332.1| transcription antitermination protein NusB [Acinetobacter sp. ATCC 27244] gi|262311579|gb|EEY92665.1| transcription antitermination factor NusB [Acinetobacter junii SH205] Length = 149 Score = 135 bits (341), Expect = 2e-30, Method: Composition-based stats. Identities = 38/135 (28%), Positives = 63/135 (46%), Gaps = 13/135 (9%) Query: 22 AAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQ 81 AVQ +Y+ + EI + VE+ VDL ++ ++ V+ + + Sbjct: 18 FAVQGIYEWQMSQNPVHEIEA-----------RTRVENAMHKVDLNYYHELLTQVVAQHE 66 Query: 82 HIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGD 141 +D L+ L + S LD + + LR G EL + VP V++ E + +A F D Sbjct: 67 ALDELLIPVLDRE--LSALDGVELATLRLGAYELRDHLEVPYRVVLDEAIELAKHFGGAD 124 Query: 142 EPKFINAVLDKVSRK 156 K+IN VLD++S K Sbjct: 125 SHKYINGVLDRLSSK 139 >gi|320160865|ref|YP_004174089.1| antitermination protein NusB [Anaerolinea thermophila UNI-1] gi|319994718|dbj|BAJ63489.1| antitermination protein NusB [Anaerolinea thermophila UNI-1] Length = 155 Score = 135 bits (341), Expect = 2e-30, Method: Composition-based stats. Identities = 39/147 (26%), Positives = 68/147 (46%), Gaps = 13/147 (8%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 R AR A++ALY+ID+ +++ E D D + R I+ G Sbjct: 4 RTRARAVALEALYEIDLTNHLPGDVLEERIKDAKLQDELAD-----------FAREIVMG 52 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135 V+ +D+ I+ +W ++ +I +ILR + E PV+V I+E V +A Sbjct: 53 VLPITHQLDVQIAKH-APEWPLDQVAVIDRNILRIALWEFAVGQCTPVKVAINEAVELAK 111 Query: 136 DFFYGDEPKFINAVLDKVS-RKEEIKR 161 + +F+N VL ++ R+ EIK+ Sbjct: 112 KYGSDSSARFVNGVLGSLADRETEIKQ 138 >gi|225420435|ref|ZP_03762738.1| hypothetical protein CLOSTASPAR_06780 [Clostridium asparagiforme DSM 15981] gi|225040922|gb|EEG51168.1| hypothetical protein CLOSTASPAR_06780 [Clostridium asparagiforme DSM 15981] Length = 197 Score = 135 bits (341), Expect = 2e-30, Method: Composition-based stats. Identities = 38/160 (23%), Positives = 64/160 (40%), Gaps = 9/160 (5%) Query: 16 RGIARLAAVQALYQIDI--IGCSTTEIISEYETYRFCADTELDVESVYLH------VDLE 67 R R + L+ D E + +Y D + + LH D Sbjct: 3 RRELREHCFKMLFSADFYPSAEEVKEQLKQYFNAPEEDDVDPKGDVTILHKVEIKEEDSR 62 Query: 68 WFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVII 127 + + G+MD+ ID I+ + W R+ + +ILR + E+ S+P +V I Sbjct: 63 YLEKRVAGIMDKIPEIDGQINE-VAAGWRTKRMGKVELTILRLALFEMKYDDSIPEKVAI 121 Query: 128 SEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRSGCVSA 167 +E V +A F + P F+N +L K + K + G A Sbjct: 122 NEAVELAKKFGGDESPSFVNGILAKFAGKAAGRTGGEAEA 161 >gi|317405459|gb|EFV85770.1| N utilization substance protein B [Achromobacter xylosoxidans C54] Length = 163 Score = 135 bits (341), Expect = 2e-30, Method: Composition-based stats. Identities = 38/141 (26%), Positives = 63/141 (44%), Gaps = 12/141 (8%) Query: 24 VQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHI 83 +Q +Y + G T+ E + + L + D +WF+ ++HGV+ + Sbjct: 32 LQGVYAWLLRGGEGTQDAGEIDAH-------LRDTEEFSEADAQWFKTLLHGVLREAPAL 84 Query: 84 DLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEP 143 + + + L + IL G ELI VP +V I+E V +A F D Sbjct: 85 RERFTPYVDR--PLAELSPVEHGILLIGSFELIHHVEVPYKVAINEAVELAKSFGGTDGF 142 Query: 144 KFINAVLDKVS---RKEEIKR 161 KF+N VLDK++ R E+K+ Sbjct: 143 KFVNGVLDKLAADVRSHEMKK 163 >gi|324992055|gb|EGC23977.1| N utilization substance protein B [Streptococcus sanguinis SK405] gi|324994148|gb|EGC26062.1| N utilization substance protein B [Streptococcus sanguinis SK678] gi|327459357|gb|EGF05703.1| N utilization substance protein B [Streptococcus sanguinis SK1] gi|327490573|gb|EGF22354.1| N utilization substance protein B [Streptococcus sanguinis SK1058] Length = 143 Score = 135 bits (341), Expect = 2e-30, Method: Composition-based stats. Identities = 34/138 (24%), Positives = 61/138 (44%), Gaps = 6/138 (4%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 R R A QAL ++ G + E + + D + + + + ++ G Sbjct: 9 RRGLRQRAFQALMSLEYEGD-----LVEACRFAYSYDKDEEADKAAEADIPAFLLNLVSG 63 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135 V+ K +D I+ L + W+ RL ++ +ILR G+ E+ E P V ++E + ++ Sbjct: 64 VVQSKDDLDKKIAQHLKKGWTVDRLTLVEKNILRLGIFEITEF-DTPQLVAVNEAIELSK 122 Query: 136 DFFYGDEPKFINAVLDKV 153 F KFIN +L K Sbjct: 123 QFSDEKSSKFINGILSKF 140 >gi|306825791|ref|ZP_07459130.1| transcription antitermination factor NusB [Streptococcus sp. oral taxon 071 str. 73H25AP] gi|304432152|gb|EFM35129.1| transcription antitermination factor NusB [Streptococcus sp. oral taxon 071 str. 73H25AP] Length = 140 Score = 135 bits (341), Expect = 2e-30, Method: Composition-based stats. Identities = 35/143 (24%), Positives = 62/143 (43%), Gaps = 11/143 (7%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 R R A QAL ++ G RF + + V L + ++ G Sbjct: 9 RRELRKCAFQALMSLEF-GTDVET------ACRFAYTHDREDTDVQLPA---FLTGLVSG 58 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135 V +K+ +D I+ L W+ RL ++ ++LR GV E+ P V ++E + +A Sbjct: 59 VQAKKEELDKQITQHLKAGWTIERLTLVERNLLRLGVFEITSF-DTPQLVAVNEAIELAK 117 Query: 136 DFFYGDEPKFINAVLDKVSRKEE 158 +F +FIN +L + +E+ Sbjct: 118 NFSDQKSARFINGLLSQFVTEEQ 140 >gi|322373691|ref|ZP_08048227.1| transcription antitermination factor NusB [Streptococcus sp. C150] gi|321278733|gb|EFX55802.1| transcription antitermination factor NusB [Streptococcus sp. C150] Length = 144 Score = 135 bits (341), Expect = 2e-30, Method: Composition-based stats. Identities = 38/140 (27%), Positives = 58/140 (41%), Gaps = 9/140 (6%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYE-TYRFCADTELDVESVYLHVDLEWFRVIIH 74 R R A Q L+ ++ G + Y +TE+DV + ++ Sbjct: 9 RRDLRERAFQTLFALEFGGEVLEQAHFAYTFDKPIGEETEVDVP--------AFLLSLVT 60 Query: 75 GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134 GV + +D I L E WS SRL + ++LR G+ E+ P V I+E + IA Sbjct: 61 GVREELAQLDSQIEEKLKEGWSLSRLIVTDRTLLRLGLYEITSFEETPGRVAINEIIEIA 120 Query: 135 HDFFYGDEPKFINAVLDKVS 154 + KFIN VL + Sbjct: 121 KKYSDETSAKFINGVLSQFV 140 >gi|228941343|ref|ZP_04103895.1| N utilization substance protein B [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228954468|ref|ZP_04116493.1| N utilization substance protein B [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228960450|ref|ZP_04122101.1| N utilization substance protein B [Bacillus thuringiensis serovar pakistani str. T13001] gi|228980868|ref|ZP_04141172.1| N utilization substance protein B [Bacillus thuringiensis Bt407] gi|229047878|ref|ZP_04193454.1| N utilization substance protein B [Bacillus cereus AH676] gi|229071689|ref|ZP_04204905.1| N utilization substance protein B [Bacillus cereus F65185] gi|229081441|ref|ZP_04213941.1| N utilization substance protein B [Bacillus cereus Rock4-2] gi|229111657|ref|ZP_04241207.1| N utilization substance protein B [Bacillus cereus Rock1-15] gi|229129462|ref|ZP_04258433.1| N utilization substance protein B [Bacillus cereus BDRD-Cer4] gi|229146757|ref|ZP_04275122.1| N utilization substance protein B [Bacillus cereus BDRD-ST24] gi|229152384|ref|ZP_04280576.1| N utilization substance protein B [Bacillus cereus m1550] gi|229163128|ref|ZP_04291084.1| N utilization substance protein B [Bacillus cereus R309803] gi|229180462|ref|ZP_04307804.1| N utilization substance protein B [Bacillus cereus 172560W] gi|229192394|ref|ZP_04319357.1| N utilization substance protein B [Bacillus cereus ATCC 10876] gi|228590971|gb|EEK48827.1| N utilization substance protein B [Bacillus cereus ATCC 10876] gi|228602886|gb|EEK60365.1| N utilization substance protein B [Bacillus cereus 172560W] gi|228620534|gb|EEK77404.1| N utilization substance protein B [Bacillus cereus R309803] gi|228630992|gb|EEK87629.1| N utilization substance protein B [Bacillus cereus m1550] gi|228636585|gb|EEK93050.1| N utilization substance protein B [Bacillus cereus BDRD-ST24] gi|228654067|gb|EEL09934.1| N utilization substance protein B [Bacillus cereus BDRD-Cer4] gi|228671792|gb|EEL27086.1| N utilization substance protein B [Bacillus cereus Rock1-15] gi|228701856|gb|EEL54342.1| N utilization substance protein B [Bacillus cereus Rock4-2] gi|228711420|gb|EEL63379.1| N utilization substance protein B [Bacillus cereus F65185] gi|228723335|gb|EEL74704.1| N utilization substance protein B [Bacillus cereus AH676] gi|228778804|gb|EEM27067.1| N utilization substance protein B [Bacillus thuringiensis Bt407] gi|228799214|gb|EEM46180.1| N utilization substance protein B [Bacillus thuringiensis serovar pakistani str. T13001] gi|228805125|gb|EEM51719.1| N utilization substance protein B [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228818269|gb|EEM64342.1| N utilization substance protein B [Bacillus thuringiensis serovar berliner ATCC 10792] Length = 120 Score = 135 bits (341), Expect = 2e-30, Method: Composition-based stats. Identities = 37/130 (28%), Positives = 58/130 (44%), Gaps = 14/130 (10%) Query: 24 VQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHI 83 +QALYQ+DI G ++ E E + ++ G ++ K+ I Sbjct: 1 MQALYQMDITGELEPKVAVENTLDEGEETNE-------------FLESLVVGFVENKEAI 47 Query: 84 DLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEP 143 D I L +KW R+ ++ SILR V E+ +P V I+E + IA F + Sbjct: 48 DEAIRQNL-KKWKLERISIVDRSILRVAVYEMKYMEEIPHNVTINEAIEIAKTFGDEESR 106 Query: 144 KFINAVLDKV 153 +FIN VL + Sbjct: 107 RFINGVLSNI 116 >gi|298369791|ref|ZP_06981107.1| transcription antitermination factor NusB [Neisseria sp. oral taxon 014 str. F0314] gi|298281251|gb|EFI22740.1| transcription antitermination factor NusB [Neisseria sp. oral taxon 014 str. F0314] Length = 142 Score = 135 bits (341), Expect = 2e-30, Method: Composition-based stats. Identities = 39/157 (24%), Positives = 57/157 (36%), Gaps = 18/157 (11%) Query: 10 LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF 69 +K RR AR AVQALYQ + E + + + D F Sbjct: 1 MKTPRRR--ARELAVQALYQAAVNNIPAAEAA-----------KNIREMAEFGKADEGLF 47 Query: 70 RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISE 129 ++ G D I L L I ++L EL P VII+E Sbjct: 48 NKLVIGTADNAAAYMQQIRPLLDRDEK--DLSPIERAVLLMACHELSAMPETPYPVIINE 105 Query: 130 YVCIAHDFFYGDEPKFINAVLDKVS---RKEEIKRSG 163 + + F D KF+N +LD+++ R + KR Sbjct: 106 AIEVTKTFGGTDGHKFVNGILDRLAVQLRPNDPKRGA 142 >gi|150016575|ref|YP_001308829.1| NusB antitermination factor [Clostridium beijerinckii NCIMB 8052] gi|189035883|sp|A6LU43|NUSB_CLOB8 RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|149903040|gb|ABR33873.1| NusB antitermination factor [Clostridium beijerinckii NCIMB 8052] Length = 133 Score = 135 bits (341), Expect = 2e-30, Method: Composition-based stats. Identities = 35/142 (24%), Positives = 63/142 (44%), Gaps = 10/142 (7%) Query: 15 RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74 R ++R A++ L+ + + + + + + + E +DL + + ++ Sbjct: 2 NRKLSREKAMELLFGMTLSKDTMEDAVEAFVE---------NYEGDIKEIDLTYVKQVLI 52 Query: 75 GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134 GV + K+ ID +I L W R+ + SILR EL+ VP V I+E + I Sbjct: 53 GVNNNKEAIDKVIQENL-HNWKIERISKVNLSILRIATYELLYDKEVPRGVAINEALEIT 111 Query: 135 HDFFYGDEPKFINAVLDKVSRK 156 + FIN VLDK+ + Sbjct: 112 RRYSDEKSVSFINGVLDKIKQD 133 >gi|319639180|ref|ZP_07993931.1| N utilization substance protein B [Neisseria mucosa C102] gi|317399364|gb|EFV80034.1| N utilization substance protein B [Neisseria mucosa C102] Length = 142 Score = 135 bits (340), Expect = 2e-30, Method: Composition-based stats. Identities = 41/155 (26%), Positives = 60/155 (38%), Gaps = 16/155 (10%) Query: 12 LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71 + R AR AVQA+YQ I + EI S ++D E F Sbjct: 1 MKSPRRRARELAVQAIYQAGINKTAAPEIAKNIHEL-----------SQSSNMDEELFNK 49 Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131 + G + IS L L I ++L EL P VII+E + Sbjct: 50 LFFGAQTHAEEYMEKISPLLDRDEK--DLSPIERAVLLVACHELSTMPETPYPVIINEAI 107 Query: 132 CIAHDFFYGDEPKFINAVLDKVS---RKEEIKRSG 163 + F D KF+N +LD+++ R +E +R G Sbjct: 108 EVTKTFGGTDGHKFVNGILDQLASRIRPDEPRRKG 142 >gi|225854005|ref|YP_002735517.1| transcription antitermination protein NusB [Streptococcus pneumoniae JJA] gi|254772660|sp|C1CCJ6|NUSB_STRZJ RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|225724174|gb|ACO20027.1| transcription antitermination factor NusB [Streptococcus pneumoniae JJA] Length = 140 Score = 135 bits (340), Expect = 2e-30, Method: Composition-based stats. Identities = 36/143 (25%), Positives = 63/143 (44%), Gaps = 11/143 (7%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 R R A QAL ++ G RF + + +V L + ++ G Sbjct: 9 RRQLRKCAFQALMSLEF-GTDVET------ACRFAYTHDREDTAVQLPA---FLIDLVSG 58 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135 V +K+ +D I+ L W+ RL ++ ++LR GV E+ P V ++E + +A Sbjct: 59 VQAKKEELDKQITQHLKAGWTIERLTLVERNLLRLGVFEITSF-DTPQLVAVNEAIELAK 117 Query: 136 DFFYGDEPKFINAVLDKVSRKEE 158 DF +FIN +L + +E+ Sbjct: 118 DFSDQKSARFINGLLSQFVTEEQ 140 >gi|224476635|ref|YP_002634241.1| transcription antitermination protein NusB [Staphylococcus carnosus subsp. carnosus TM300] gi|254772655|sp|B9DNQ0|NUSB_STACT RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|222421242|emb|CAL28056.1| putative N utilization substance protein NusB [Staphylococcus carnosus subsp. carnosus TM300] Length = 128 Score = 135 bits (340), Expect = 2e-30, Method: Composition-based stats. Identities = 40/138 (28%), Positives = 62/138 (44%), Gaps = 13/138 (9%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 R +R A QAL+Q+++ +S E F D Y ++ ++ ++ G Sbjct: 3 RKESRSQAFQALFQLEMENTD----LSIDEAINFIKD-------DYPDLEFDFIYWLVSG 51 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135 V D + +D I + L + W SRL ILR EL P +VII+E V +A Sbjct: 52 VKDHEPVLDEKIQNNL-KDWKISRLLKTDRIILRMAAFELANS-DTPPKVIINEAVELAK 109 Query: 136 DFFYGDEPKFINAVLDKV 153 + D +FIN VL + Sbjct: 110 QYSDDDHYRFINGVLSNL 127 >gi|25028292|ref|NP_738346.1| transcription antitermination protein NusB [Corynebacterium efficiens YS-314] gi|32171659|sp|Q8FT35|NUSB_COREF RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|23493576|dbj|BAC18546.1| conserved hypothetical protein [Corynebacterium efficiens YS-314] Length = 188 Score = 135 bits (340), Expect = 2e-30, Method: Composition-based stats. Identities = 40/165 (24%), Positives = 69/165 (41%), Gaps = 7/165 (4%) Query: 3 IQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYL 62 + ++++ K R AR AV L++ + II + +T D + + Sbjct: 1 MSESRQGYKRHGARYKARRRAVDILFEAESRDVDPVAIIDDRKTLSNAVDPVVAPVA--- 57 Query: 63 HVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVP 122 E+ II+GV ID L+S + + W RL + ++LR E++ VP Sbjct: 58 ----EYTEAIINGVAVELDTIDDLLSEHIADTWLLERLPSVDRAVLRVACWEMLYNPDVP 113 Query: 123 VEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRSGCVSA 167 V + E V IA + +INA LD ++ K + R + Sbjct: 114 VTTAVVEAVEIASQYSTDKAGAYINATLDNMASKVDELRERAANP 158 >gi|260553344|ref|ZP_05825958.1| transcription termination factor [Acinetobacter sp. RUH2624] gi|260405181|gb|EEW98679.1| transcription termination factor [Acinetobacter sp. RUH2624] Length = 149 Score = 135 bits (340), Expect = 2e-30, Method: Composition-based stats. Identities = 34/133 (25%), Positives = 60/133 (45%), Gaps = 13/133 (9%) Query: 22 AAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQ 81 AVQ +Y+ + EI + E+ VDL ++ ++ V+ + + Sbjct: 18 FAVQGIYEWQMSHNPVHEIEA-----------RTRAENAMHKVDLSYYHELLTQVIAQHE 66 Query: 82 HIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGD 141 +D L+ L + LD + + LR G EL + +P V++ E + +A F D Sbjct: 67 DLDALLIPVLDRE--IDALDGVELATLRLGAYELRDHLEIPYRVVLDEAIELAKHFGGAD 124 Query: 142 EPKFINAVLDKVS 154 K+IN VLD++S Sbjct: 125 SHKYINGVLDRLS 137 >gi|15900351|ref|NP_344955.1| transcription antitermination protein NusB [Streptococcus pneumoniae TIGR4] gi|111657914|ref|ZP_01408625.1| hypothetical protein SpneT_02000923 [Streptococcus pneumoniae TIGR4] gi|116516227|ref|YP_815903.1| transcription antitermination protein NusB [Streptococcus pneumoniae D39] gi|148983827|ref|ZP_01817146.1| transcription antitermination factor NusB [Streptococcus pneumoniae SP3-BS71] gi|148988184|ref|ZP_01819647.1| transcription antitermination factor NusB [Streptococcus pneumoniae SP6-BS73] gi|148996835|ref|ZP_01824553.1| transcription antitermination factor NusB [Streptococcus pneumoniae SP11-BS70] gi|149003529|ref|ZP_01828403.1| transcription antitermination factor NusB [Streptococcus pneumoniae SP14-BS69] gi|149012182|ref|ZP_01833291.1| transcription antitermination factor NusB [Streptococcus pneumoniae SP19-BS75] gi|149023719|ref|ZP_01836199.1| transcription antitermination factor NusB [Streptococcus pneumoniae SP23-BS72] gi|168482670|ref|ZP_02707622.1| transcription antitermination factor NusB [Streptococcus pneumoniae CDC1873-00] gi|168490656|ref|ZP_02714799.1| transcription antitermination factor NusB [Streptococcus pneumoniae CDC0288-04] gi|168495037|ref|ZP_02719180.1| transcription antitermination factor NusB [Streptococcus pneumoniae CDC3059-06] gi|169832898|ref|YP_001693937.1| transcription antitermination protein NusB [Streptococcus pneumoniae Hungary19A-6] gi|194396779|ref|YP_002037111.1| transcription antitermination protein NusB [Streptococcus pneumoniae G54] gi|221231296|ref|YP_002510448.1| N utilization substance protein B homolog (NusB protein) [Streptococcus pneumoniae ATCC 700669] gi|225856159|ref|YP_002737670.1| transcription antitermination protein NusB [Streptococcus pneumoniae P1031] gi|225860454|ref|YP_002741963.1| transcription antitermination protein NusB [Streptococcus pneumoniae Taiwan19F-14] gi|237650354|ref|ZP_04524606.1| transcription antitermination protein NusB [Streptococcus pneumoniae CCRI 1974] gi|237822042|ref|ZP_04597887.1| transcription antitermination protein NusB [Streptococcus pneumoniae CCRI 1974M2] gi|298230814|ref|ZP_06964495.1| transcription antitermination protein NusB [Streptococcus pneumoniae str. Canada MDR_19F] gi|298254607|ref|ZP_06978193.1| transcription antitermination protein NusB [Streptococcus pneumoniae str. Canada MDR_19A] gi|298502226|ref|YP_003724166.1| transcription antitermination protein NusB [Streptococcus pneumoniae TCH8431/19A] gi|307067077|ref|YP_003876043.1| transcription termination factor [Streptococcus pneumoniae AP200] gi|54037926|sp|P65583|NUSB_STRR6 RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|54041676|sp|P65582|NUSB_STRPN RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|122279211|sp|Q04M45|NUSB_STRP2 RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|238688321|sp|B1I9M4|NUSB_STRPI RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|238690799|sp|B5E1P3|NUSB_STRP4 RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|254772658|sp|B8ZLJ7|NUSB_STRPJ RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|254772661|sp|C1CIT2|NUSB_STRZP RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|254772662|sp|C1CPU1|NUSB_STRZT RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|14971902|gb|AAK74595.1| N utilization substance protein B [Streptococcus pneumoniae TIGR4] gi|116076803|gb|ABJ54523.1| transcription antitermination factor NusB [Streptococcus pneumoniae D39] gi|147757410|gb|EDK64449.1| transcription antitermination factor NusB [Streptococcus pneumoniae SP11-BS70] gi|147758465|gb|EDK65464.1| transcription antitermination factor NusB [Streptococcus pneumoniae SP14-BS69] gi|147763784|gb|EDK70718.1| transcription antitermination factor NusB [Streptococcus pneumoniae SP19-BS75] gi|147923974|gb|EDK75086.1| transcription antitermination factor NusB [Streptococcus pneumoniae SP3-BS71] gi|147926648|gb|EDK77721.1| transcription antitermination factor NusB [Streptococcus pneumoniae SP6-BS73] gi|147929656|gb|EDK80648.1| transcription antitermination factor NusB [Streptococcus pneumoniae SP23-BS72] gi|168995400|gb|ACA36012.1| transcription antitermination factor NusB [Streptococcus pneumoniae Hungary19A-6] gi|172043807|gb|EDT51853.1| transcription antitermination factor NusB [Streptococcus pneumoniae CDC1873-00] gi|183575029|gb|EDT95557.1| transcription antitermination factor NusB [Streptococcus pneumoniae CDC0288-04] gi|183575089|gb|EDT95617.1| transcription antitermination factor NusB [Streptococcus pneumoniae CDC3059-06] gi|194356446|gb|ACF54894.1| transcription antitermination factor NusB [Streptococcus pneumoniae G54] gi|220673756|emb|CAR68255.1| N utilization substance protein B homolog (NusB protein) [Streptococcus pneumoniae ATCC 700669] gi|225725650|gb|ACO21502.1| transcription antitermination factor NusB [Streptococcus pneumoniae P1031] gi|225726476|gb|ACO22327.1| transcription antitermination factor NusB [Streptococcus pneumoniae Taiwan19F-14] gi|298237821|gb|ADI68952.1| transcription antitermination protein NusB [Streptococcus pneumoniae TCH8431/19A] gi|301799529|emb|CBW32077.1| N utilization substance protein B homolog (NusB protein) [Streptococcus pneumoniae OXC141] gi|306408614|gb|ADM84041.1| Transcription termination factor [Streptococcus pneumoniae AP200] gi|327390840|gb|EGE89180.1| transcription antitermination factor NusB [Streptococcus pneumoniae GA04375] gi|332202338|gb|EGJ16407.1| transcription antitermination factor NusB [Streptococcus pneumoniae GA41317] gi|332203602|gb|EGJ17669.1| transcription antitermination factor NusB [Streptococcus pneumoniae GA47368] gi|332204458|gb|EGJ18523.1| transcription antitermination factor NusB [Streptococcus pneumoniae GA47901] Length = 140 Score = 135 bits (340), Expect = 2e-30, Method: Composition-based stats. Identities = 36/143 (25%), Positives = 62/143 (43%), Gaps = 11/143 (7%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 R R A QAL ++ G RF + + V L + ++ G Sbjct: 9 RRQLRKCAFQALMSLEF-GTDVET------ACRFAYTHDREDTDVQLPA---FLIDLVSG 58 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135 V +K+ +D I+ L W+ RL ++ ++LR GV E+ P V ++E + +A Sbjct: 59 VQAKKEELDKQITQHLKAGWTIERLTLVERNLLRLGVFEITSF-DTPQLVAVNEAIELAK 117 Query: 136 DFFYGDEPKFINAVLDKVSRKEE 158 DF +FIN +L + +E+ Sbjct: 118 DFSDQKSARFINGLLSQFVTEEQ 140 >gi|116618710|ref|YP_819081.1| NusB antitermination factor [Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293] gi|227432118|ref|ZP_03914130.1| transcription antitermination protein NusB [Leuconostoc mesenteroides subsp. cremoris ATCC 19254] gi|116097557|gb|ABJ62708.1| NusB antitermination factor [Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293] gi|227352145|gb|EEJ42359.1| transcription antitermination protein NusB [Leuconostoc mesenteroides subsp. cremoris ATCC 19254] Length = 137 Score = 135 bits (340), Expect = 2e-30, Method: Composition-based stats. Identities = 39/143 (27%), Positives = 66/143 (46%), Gaps = 13/143 (9%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 R +R AA Q L+ ++ + +I YE + ++ +++G Sbjct: 6 RHESRQAAFQVLFALE-KDPQSNKIDDLYEIVLNGKQFD------------DYLPRLVNG 52 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135 V+ K +D ISS L E W+ +R++ ILR + EL + P +V I E + +A Sbjct: 53 VLGSKADLDEKISSHLAEGWAINRINKADLVILRLAIYELTAVEATPYKVAIDEAIELAK 112 Query: 136 DFFYGDEPKFINAVLDKVSRKEE 158 F D+ KF+N VL +R E+ Sbjct: 113 TFADEDDRKFVNGVLKHFARDEK 135 >gi|220912760|ref|YP_002488069.1| NusB antitermination factor [Arthrobacter chlorophenolicus A6] gi|254772610|sp|B8H8V2|NUSB_ARTCA RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|219859638|gb|ACL39980.1| NusB antitermination factor [Arthrobacter chlorophenolicus A6] Length = 136 Score = 135 bits (340), Expect = 2e-30, Method: Composition-based stats. Identities = 35/138 (25%), Positives = 61/138 (44%), Gaps = 14/138 (10%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 RG AR A+ L++ + S +++ + + I+ G Sbjct: 4 RGKARSRALDVLFEAEQRSASAFDVLRARR-------------EKTDQIVNPYTLEIVEG 50 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135 V+ R+Q ID + + ++ WS R+ + ILR G EL+ VP V +SE V +A Sbjct: 51 VVSRQQAIDEFLETY-SQGWSLERMPSVDRIILRIGTWELLYNDDVPDGVAVSEAVALAK 109 Query: 136 DFFYGDEPKFINAVLDKV 153 + P+FIN +L ++ Sbjct: 110 TLSTDESPQFINGLLGRL 127 >gi|149008214|ref|ZP_01831709.1| transcription antitermination protein NusB [Streptococcus pneumoniae SP18-BS74] gi|307126646|ref|YP_003878677.1| transcription antitermination factor NusB [Streptococcus pneumoniae 670-6B] gi|147760358|gb|EDK67339.1| transcription antitermination protein NusB [Streptococcus pneumoniae SP18-BS74] gi|306483708|gb|ADM90577.1| transcription antitermination factor NusB [Streptococcus pneumoniae 670-6B] gi|332076876|gb|EGI87338.1| transcription antitermination factor NusB [Streptococcus pneumoniae GA17545] Length = 140 Score = 135 bits (340), Expect = 2e-30, Method: Composition-based stats. Identities = 36/143 (25%), Positives = 62/143 (43%), Gaps = 11/143 (7%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 R R A QAL ++ G RF + + V L + ++ G Sbjct: 9 RRQLRKCAFQALMSLEF-GTDVET------ACRFAYTHDREYTDVQLPA---FLIDLVSG 58 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135 V +K+ +D I+ L W+ RL ++ ++LR GV E+ P V ++E + +A Sbjct: 59 VQAKKEELDKQITQHLKAGWTIERLTLVERNLLRLGVFEITSF-DTPQLVAVNEAIELAK 117 Query: 136 DFFYGDEPKFINAVLDKVSRKEE 158 DF +FIN +L + +E+ Sbjct: 118 DFSDQKSARFINGLLSQFVTEEQ 140 >gi|157828080|ref|YP_001494322.1| transcription antitermination protein NusB [Rickettsia rickettsii str. 'Sheila Smith'] gi|165932780|ref|YP_001649569.1| transcription antitermination protein NusB [Rickettsia rickettsii str. Iowa] gi|166215712|sp|A8GQY9|NUSB_RICRS RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|189035898|sp|B0BWD7|NUSB_RICRO RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|157800561|gb|ABV75814.1| transcription antitermination protein NusB [Rickettsia rickettsii str. 'Sheila Smith'] gi|165907867|gb|ABY72163.1| N utilization substance protein B [Rickettsia rickettsii str. Iowa] Length = 156 Score = 135 bits (340), Expect = 2e-30, Method: Composition-based stats. Identities = 41/145 (28%), Positives = 84/145 (57%), Gaps = 2/145 (1%) Query: 14 HRRGIARLAAVQALYQ-IDIIGCSTTEIISEYETYRFCADTELD-VESVYLHVDLEWFRV 71 +++ IAR+AAVQA+YQ I +I+ ++ ++ D E++ + + + F++ Sbjct: 7 NKKSIARIAAVQAIYQNILQNNDDMDDIMQNVLSFYQNNNSITDLPENLKISLSISHFKM 66 Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131 ++ V + +D +I + LT + + ++L ++LR + EL+ C + P +V+I+EY Sbjct: 67 LVKLVFENIHKLDEIIDNHLTNDKDPAHMPILLRALLRVSICELLFCPTTPAKVVINEYT 126 Query: 132 CIAHDFFYGDEPKFINAVLDKVSRK 156 IA+D E F+N+VLDK++++ Sbjct: 127 DIANDMLNEHEIGFVNSVLDKIAKE 151 >gi|146297126|ref|YP_001180897.1| NusB antitermination factor [Caldicellulosiruptor saccharolyticus DSM 8903] gi|254772620|sp|A4XLC1|NUSB_CALS8 RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|145410702|gb|ABP67706.1| NusB antitermination factor [Caldicellulosiruptor saccharolyticus DSM 8903] Length = 142 Score = 135 bits (340), Expect = 2e-30, Method: Composition-based stats. Identities = 37/148 (25%), Positives = 67/148 (45%), Gaps = 8/148 (5%) Query: 14 HRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVII 73 H+R R ++ LY I EL+ + + +D E+ + ++ Sbjct: 2 HKRRKTRELCMKILYAYRFQNNEYDIIE------FLNKFKELNPDENFKEIDEEYLKKLL 55 Query: 74 HGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCI 133 GV+ +Q ID LI ++ W SR+ M+ ++R + EL+ +P+ V I E V + Sbjct: 56 TGVIRNQQLIDNLIEKY-SKDWPLSRIPMVELELMRIAIYELLFEEEIPISVAIDEAVDL 114 Query: 134 AHDFFYGDEPKFINAVLDKVSRKEEIKR 161 + F P F+N +L ++ E+KR Sbjct: 115 SSIFGVEKAPSFVNGILGSIA-VNEVKR 141 >gi|293376577|ref|ZP_06622805.1| transcription antitermination factor NusB [Turicibacter sanguinis PC909] gi|325839451|ref|ZP_08166890.1| transcription antitermination factor NusB [Turicibacter sp. HGF1] gi|292644803|gb|EFF62885.1| transcription antitermination factor NusB [Turicibacter sanguinis PC909] gi|325490571|gb|EGC92887.1| transcription antitermination factor NusB [Turicibacter sp. HGF1] Length = 159 Score = 135 bits (340), Expect = 2e-30, Method: Composition-based stats. Identities = 44/155 (28%), Positives = 72/155 (46%), Gaps = 16/155 (10%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYE---TYRFCADTELDVESVYLHVDL------ 66 R + R AVQ LYQ+++ + E I E EL E V H L Sbjct: 3 RHVIRQFAVQTLYQMEVGQLTREEAIENIELMVESLKEEAIELMAEEVTPHQALQMEQTF 62 Query: 67 ---EWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPV 123 E++ +++GV+ K+ +D +I+ L WS SRL+ + +ILR E+ C Sbjct: 63 KLDEFYFELVNGVLTHKEQLDQIINDNL-RGWSLSRLNKVDKAILRLATYEMKYCQDTAK 121 Query: 124 EVIISEYVCIAHDF---FYGDEPKFINAVLDKVSR 155 +++I E + + +F G F N VLD++S+ Sbjct: 122 KIVIDEALELTKEFSDTGDGKARSFNNKVLDQISK 156 >gi|327458960|gb|EGF05308.1| N utilization substance protein B [Streptococcus sanguinis SK1057] Length = 143 Score = 135 bits (340), Expect = 3e-30, Method: Composition-based stats. Identities = 33/138 (23%), Positives = 60/138 (43%), Gaps = 6/138 (4%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 R R A QAL ++ G + E + + D + + + ++ G Sbjct: 9 RRGLRQRAFQALMSLEYEGD-----LVEACRFAYSYDKDEGADKATEADIPAFLLNLVSG 63 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135 V+ K +D I+ L + W+ RL ++ +ILR G+ E+ E P V ++E + ++ Sbjct: 64 VVQSKDDLDKKIAQHLKKGWTVDRLTLVEKNILRLGIFEITEF-DTPQLVAVNEAIELSK 122 Query: 136 DFFYGDEPKFINAVLDKV 153 F KFIN +L + Sbjct: 123 QFSDEKSSKFINGILSQF 140 >gi|225075389|ref|ZP_03718588.1| hypothetical protein NEIFLAOT_00394 [Neisseria flavescens NRL30031/H210] gi|224953207|gb|EEG34416.1| hypothetical protein NEIFLAOT_00394 [Neisseria flavescens NRL30031/H210] Length = 142 Score = 135 bits (340), Expect = 3e-30, Method: Composition-based stats. Identities = 41/155 (26%), Positives = 59/155 (38%), Gaps = 16/155 (10%) Query: 12 LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71 + R AR AVQA+YQ I + EI S ++D E F Sbjct: 1 MKSPRRRARELAVQAIYQAGINKTAAPEIAKNIHEL-----------SQTSNMDEELFNK 49 Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131 + G IS L L I ++L EL P VII+E + Sbjct: 50 LFFGAQTHAAEYMEKISPLLDRDEK--DLSPIERAVLLVACHELSTMPETPYPVIINEAI 107 Query: 132 CIAHDFFYGDEPKFINAVLDKVS---RKEEIKRSG 163 + F D KF+N +LD+++ R +E +R G Sbjct: 108 EVTKTFGGTDGHKFVNGILDQLASRIRPDEPRRKG 142 >gi|255020761|ref|ZP_05292820.1| Transcription termination protein NusB [Acidithiobacillus caldus ATCC 51756] gi|254969823|gb|EET27326.1| Transcription termination protein NusB [Acidithiobacillus caldus ATCC 51756] Length = 147 Score = 135 bits (340), Expect = 3e-30, Method: Composition-based stats. Identities = 41/155 (26%), Positives = 70/155 (45%), Gaps = 15/155 (9%) Query: 18 IARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVM 77 +AR A +QALYQ + EI ++ L+ + + D +F I + Sbjct: 1 MAREALLQALYQWQLNPAPCGEIARQF----------LEDDERLVGADQRFFEDIWGRLC 50 Query: 78 DRKQHIDLLISSC-LTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHD 136 + +D I+S L +W + + +ILR G EL E P VII+E V ++ Sbjct: 51 PVMETLDQAIASVILDRRWQ-DEVSEVERAILRLGAFELREERQTPYRVIINEAVELSKA 109 Query: 137 FFYGDEPKFINAVLDKVS---RKEEIKRSGCVSAI 168 F +FIN VLD+++ R+ E++ ++ Sbjct: 110 FGAEQGHRFINGVLDRLAHQWRQAELENPDGDASP 144 >gi|284032250|ref|YP_003382181.1| NusB antitermination factor [Kribbella flavida DSM 17836] gi|283811543|gb|ADB33382.1| NusB antitermination factor [Kribbella flavida DSM 17836] Length = 136 Score = 135 bits (340), Expect = 3e-30, Method: Composition-based stats. Identities = 37/138 (26%), Positives = 65/138 (47%), Gaps = 14/138 (10%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 R AR A+ LY+ ++ G +++ AD + V E+ ++ G Sbjct: 4 RSKARKRALDVLYESEVRGLPVGGTLADR-----VADNDPPVN--------EFTVALVEG 50 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135 V + ID L+S+ + W+ R+ + ++LR GV EL+ VP V +SE V +A Sbjct: 51 VAEHIAAIDDLLSTH-SVGWTLDRMPAVDRNVLRIGVYELLFDEQVPDVVAVSEAVALAR 109 Query: 136 DFFYGDEPKFINAVLDKV 153 D + P F+N +L ++ Sbjct: 110 DLSTDESPAFVNGLLARL 127 >gi|229135004|ref|ZP_04263810.1| N utilization substance protein B [Bacillus cereus BDRD-ST196] gi|228648506|gb|EEL04535.1| N utilization substance protein B [Bacillus cereus BDRD-ST196] Length = 120 Score = 135 bits (340), Expect = 3e-30, Method: Composition-based stats. Identities = 38/130 (29%), Positives = 58/130 (44%), Gaps = 14/130 (10%) Query: 24 VQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHI 83 +QALYQ+DI G ++ E E + ++ G +D K+ I Sbjct: 1 MQALYQMDITGELEPKVAVENTLDEGEETNE-------------FLESLVVGFVDNKEEI 47 Query: 84 DLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEP 143 D I L +KW R+ ++ SILR V E+ +P V I+E + IA F + Sbjct: 48 DAAIRQNL-KKWKLERISIVDRSILRVAVCEMKYMEEIPHNVTINEAIEIAKTFGDEESR 106 Query: 144 KFINAVLDKV 153 +FIN VL + Sbjct: 107 RFINGVLSNI 116 >gi|87200933|ref|YP_498190.1| NusB antitermination factor [Novosphingobium aromaticivorans DSM 12444] gi|119390792|sp|Q2G467|NUSB_NOVAD RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|87136614|gb|ABD27356.1| NusB antitermination factor [Novosphingobium aromaticivorans DSM 12444] Length = 148 Score = 135 bits (340), Expect = 3e-30, Method: Composition-based stats. Identities = 46/129 (35%), Positives = 71/129 (55%), Gaps = 3/129 (2%) Query: 28 YQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLI 87 YQ D+ ++ E+ +R A+ E + Y D+ +F ++ GV R+ ID L+ Sbjct: 21 YQADMEQTPLHLLLDEFHQHRLGAEIE---DVEYAKADVAFFDDVVKGVDARRDEIDGLL 77 Query: 88 SSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFIN 147 S+ L + W+ RLD + ILRAG EL+ V V +I+EYV +AH FF E KF+N Sbjct: 78 SARLAKGWALPRLDRTMLQILRAGAYELMARRDVNVGTVITEYVDVAHAFFEEREAKFVN 137 Query: 148 AVLDKVSRK 156 +LD V++ Sbjct: 138 GLLDAVAKD 146 >gi|293610510|ref|ZP_06692810.1| conserved hypothetical protein [Acinetobacter sp. SH024] gi|292826854|gb|EFF85219.1| conserved hypothetical protein [Acinetobacter sp. SH024] gi|325123924|gb|ADY83447.1| transcription termination, L factor (N utilization substance protein B) [Acinetobacter calcoaceticus PHEA-2] Length = 149 Score = 134 bits (339), Expect = 3e-30, Method: Composition-based stats. Identities = 36/133 (27%), Positives = 61/133 (45%), Gaps = 13/133 (9%) Query: 22 AAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQ 81 AVQ +Y+ + EI + E+ VDL ++ ++ V+ + + Sbjct: 18 FAVQGIYEWQMSHNPVHEIEA-----------RTRAENAMHKVDLNYYHELLTQVIAQHE 66 Query: 82 HIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGD 141 +D L+ L + S LD + + LR G EL + VP V++ E + +A F D Sbjct: 67 DLDALLIPVLDRE--LSALDGVELATLRLGAYELRDHLEVPYRVVLDEAIELAKHFGGAD 124 Query: 142 EPKFINAVLDKVS 154 K+IN VLD++S Sbjct: 125 SHKYINGVLDRLS 137 >gi|125717317|ref|YP_001034450.1| transcription antitermination protein NusB [Streptococcus sanguinis SK36] gi|125497234|gb|ABN43900.1| Nitrogen utilization substance protein B, putative [Streptococcus sanguinis SK36] Length = 148 Score = 134 bits (339), Expect = 3e-30, Method: Composition-based stats. Identities = 33/138 (23%), Positives = 60/138 (43%), Gaps = 6/138 (4%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 R R A QAL ++ G + E + + D + + + ++ G Sbjct: 14 RRGLRQRAFQALMSLEYEGD-----LVEACRFAYSYDKDEGADKAAEADIPAFLLNLVSG 68 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135 V+ K +D I+ L + W+ RL ++ +ILR G+ E+ E P V ++E + ++ Sbjct: 69 VVQSKDDLDKKIAQHLKKGWTVDRLTLVEKNILRLGIFEITEF-DTPQLVAVNEAIELSK 127 Query: 136 DFFYGDEPKFINAVLDKV 153 F KFIN +L + Sbjct: 128 QFSDEKSSKFINGILSQF 145 >gi|332364657|gb|EGJ42426.1| N utilization substance protein B [Streptococcus sanguinis SK1059] Length = 143 Score = 134 bits (339), Expect = 3e-30, Method: Composition-based stats. Identities = 33/138 (23%), Positives = 61/138 (44%), Gaps = 6/138 (4%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 R R A QAL ++ G + E + + D + + + + ++ G Sbjct: 9 RRGLRQRAFQALMSLEYEGD-----LVEACRFSYSYDKDEEADKAAEADIPAFLLNLVSG 63 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135 V+ K +D I+ L + W+ RL ++ +ILR G+ E+ E P V ++E + ++ Sbjct: 64 VVQSKDDLDKKIAQHLKKGWTVDRLTLVEKNILRLGIFEITEF-DTPQLVAVNEAIELSK 122 Query: 136 DFFYGDEPKFINAVLDKV 153 F KFIN +L + Sbjct: 123 QFSDEKSSKFINGILSQF 140 >gi|228987373|ref|ZP_04147493.1| N utilization substance protein B [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|229140916|ref|ZP_04269460.1| N utilization substance protein B [Bacillus cereus BDRD-ST26] gi|229157781|ref|ZP_04285856.1| N utilization substance protein B [Bacillus cereus ATCC 4342] gi|229186425|ref|ZP_04313589.1| N utilization substance protein B [Bacillus cereus BGSC 6E1] gi|229198309|ref|ZP_04325016.1| N utilization substance protein B [Bacillus cereus m1293] gi|228585188|gb|EEK43299.1| N utilization substance protein B [Bacillus cereus m1293] gi|228597052|gb|EEK54708.1| N utilization substance protein B [Bacillus cereus BGSC 6E1] gi|228625738|gb|EEK82490.1| N utilization substance protein B [Bacillus cereus ATCC 4342] gi|228642492|gb|EEK98779.1| N utilization substance protein B [Bacillus cereus BDRD-ST26] gi|228772345|gb|EEM20791.1| N utilization substance protein B [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] Length = 120 Score = 134 bits (339), Expect = 3e-30, Method: Composition-based stats. Identities = 37/130 (28%), Positives = 58/130 (44%), Gaps = 14/130 (10%) Query: 24 VQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHI 83 +QALYQ+DI G ++ E E + ++ G ++ K+ I Sbjct: 1 MQALYQMDITGELEPKVAVENTLDEGEETNE-------------FLESLVVGFVENKEVI 47 Query: 84 DLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEP 143 D I L +KW R+ ++ SILR V E+ +P V I+E + IA F + Sbjct: 48 DEAIRQNL-KKWKLERISIVDRSILRVAVYEMKYMEEIPHNVTINEAIEIAKTFGDEESR 106 Query: 144 KFINAVLDKV 153 +FIN VL + Sbjct: 107 RFINGVLSNI 116 >gi|324990231|gb|EGC22169.1| N utilization substance protein B [Streptococcus sanguinis SK353] gi|325688019|gb|EGD30038.1| N utilization substance protein B [Streptococcus sanguinis SK72] Length = 143 Score = 134 bits (339), Expect = 3e-30, Method: Composition-based stats. Identities = 33/138 (23%), Positives = 61/138 (44%), Gaps = 6/138 (4%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 R R A QAL ++ G + E + + D + + + + ++ G Sbjct: 9 RRGLRQRAFQALMSLEYEGD-----LVEACRFAYSYDKDEETDKAAEADIPAFLLNLVSG 63 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135 V+ K +D I+ L + W+ RL ++ +ILR G+ E+ E P V ++E + ++ Sbjct: 64 VVQSKDDLDKKIAQHLKKGWTVDRLTLVEKNILRLGIFEITEF-DTPQLVAVNEAIELSK 122 Query: 136 DFFYGDEPKFINAVLDKV 153 F KFIN +L + Sbjct: 123 QFSDEKSSKFINGILSQF 140 >gi|313681443|ref|YP_004059181.1| nusb antitermination factor [Sulfuricurvum kujiense DSM 16994] gi|313154303|gb|ADR32981.1| NusB antitermination factor [Sulfuricurvum kujiense DSM 16994] Length = 132 Score = 134 bits (339), Expect = 3e-30, Method: Composition-based stats. Identities = 40/142 (28%), Positives = 61/142 (42%), Gaps = 13/142 (9%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 R AR+A V LY D+ + + E + + + D + + G Sbjct: 4 RHQARMAVVSLLYAYDLGNQTIADFSDEILEEKKIRNKQRD-----------FALDLFKG 52 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135 V + ID I L + W F RL I + LR G E++ + VII+E + +A Sbjct: 53 VTEHLSEIDEAIVKHL-KDWDFDRLGSIERATLRLGGYEIMFG-ELDSAVIINEAIEVAK 110 Query: 136 DFFYGDEPKFINAVLDKVSRKE 157 F PKFIN VLD +S+ + Sbjct: 111 AFGSEQSPKFINGVLDAISKDK 132 >gi|328945778|gb|EGG39929.1| N utilization substance protein B [Streptococcus sanguinis SK1087] Length = 143 Score = 134 bits (339), Expect = 3e-30, Method: Composition-based stats. Identities = 34/138 (24%), Positives = 62/138 (44%), Gaps = 6/138 (4%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 R R A QAL ++ G + E + + D + + + V + ++ G Sbjct: 9 RRGLRQRAFQALMSLEYEGD-----LVEACRFAYSYDKDEEADKVAEADIPAFLLNLVSG 63 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135 V+ K +D I+ L + W+ RL ++ +ILR G+ E+ E P V ++E + ++ Sbjct: 64 VVQSKDDLDKKIAQHLKKGWTVDRLTLVEKNILRLGIFEITEF-DTPQLVAVNEAIELSK 122 Query: 136 DFFYGDEPKFINAVLDKV 153 F KFIN +L + Sbjct: 123 QFSDEKSSKFINGILSQF 140 >gi|149194728|ref|ZP_01871823.1| N utilization substance protein B [Caminibacter mediatlanticus TB-2] gi|149135151|gb|EDM23632.1| N utilization substance protein B [Caminibacter mediatlanticus TB-2] Length = 136 Score = 134 bits (339), Expect = 3e-30, Method: Composition-based stats. Identities = 42/145 (28%), Positives = 71/145 (48%), Gaps = 13/145 (8%) Query: 17 GIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGV 76 AR A +Q LY ++ + I++++ EL E E+ + +++GV Sbjct: 5 THAREAVIQTLYAKELGN---DDAINQFD--------ELLKERKIKGQKAEFAKKLLNGV 53 Query: 77 MDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHD 136 ++ ID +I + L WSF RLD + ILR G+ E+ P +++I E V IA + Sbjct: 54 LEHINEIDEIIKNHLI-DWSFDRLDKVDKQILRTGIYEIKYT-DTPYQIVIDEAVKIAKN 111 Query: 137 FFYGDEPKFINAVLDKVSRKEEIKR 161 F FIN +LDKV+++ + Sbjct: 112 FSEDKSKNFINGILDKVAKEVRENK 136 >gi|222151417|ref|YP_002560573.1| transcription termination factor [Macrococcus caseolyticus JCSC5402] gi|254772646|sp|B9E6Q9|NUSB_MACCJ RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|222120542|dbj|BAH17877.1| transcription termination factor [Macrococcus caseolyticus JCSC5402] Length = 130 Score = 134 bits (339), Expect = 3e-30, Method: Composition-based stats. Identities = 41/142 (28%), Positives = 66/142 (46%), Gaps = 15/142 (10%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 R +R A+Q L+QI+ EI E T DV + ++HG Sbjct: 3 RTESREHAIQILFQIE---NEAHEISVEDATRFIVEPPNRDV----------FADELVHG 49 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135 V+ ++ +D I+ L + W+ RL+ I ILR EL+ P +VI++E V +A Sbjct: 50 VISKQNELDDKITPHL-KSWALERLNKIDRIILRLSAFELLYT-DAPEKVIVNEAVNLAK 107 Query: 136 DFFYGDEPKFINAVLDKVSRKE 157 F + KFIN VL ++ + + Sbjct: 108 KFSDDESYKFINGVLSEIIKNK 129 >gi|311108723|ref|YP_003981576.1| transcription antitermination factor NusB [Achromobacter xylosoxidans A8] gi|310763412|gb|ADP18861.1| transcription antitermination factor NusB [Achromobacter xylosoxidans A8] Length = 164 Score = 134 bits (339), Expect = 3e-30, Method: Composition-based stats. Identities = 37/141 (26%), Positives = 62/141 (43%), Gaps = 12/141 (8%) Query: 24 VQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHI 83 +Q +Y + G T+ E + + L + D +WF+ ++HGV+ + Sbjct: 32 LQGVYAWLLRGGEGTQDAGEIDAH-------LRDTEDFSEADAQWFKTLLHGVLREAPAL 84 Query: 84 DLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEP 143 + + + L + IL G ELI VP +V I+E V +A F D Sbjct: 85 RQRFTPYVDR--PLAELSPVEHGILLIGSFELIHHVEVPYKVAINEAVELAKSFGGTDGF 142 Query: 144 KFINAVLDKVS---RKEEIKR 161 KF+N VLDK++ R E+ + Sbjct: 143 KFVNGVLDKLAADVRANEVNK 163 >gi|94264516|ref|ZP_01288303.1| NusB antitermination factor [delta proteobacterium MLMS-1] gi|94265524|ref|ZP_01289272.1| NusB antitermination factor [delta proteobacterium MLMS-1] gi|93453965|gb|EAT04311.1| NusB antitermination factor [delta proteobacterium MLMS-1] gi|93455075|gb|EAT05302.1| NusB antitermination factor [delta proteobacterium MLMS-1] Length = 135 Score = 134 bits (339), Expect = 3e-30, Method: Composition-based stats. Identities = 37/138 (26%), Positives = 58/138 (42%), Gaps = 12/138 (8%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 R AR A+QALYQ +++G + + C + E + L + R ++ G Sbjct: 6 RRKARELALQALYQGEMLGVGALDTLP-----SLCENFEASRRA------LPYARELLAG 54 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135 + + I W R+ I +++R V E+ VP V I E V +A Sbjct: 55 IEAHGEAI-DAAIDAAAANWRLDRMSYIDRNLMRIAVYEMRWRDEVPAGVAIDEAVELAK 113 Query: 136 DFFYGDEPKFINAVLDKV 153 + D P FIN +LD V Sbjct: 114 RYGADDSPAFINGILDAV 131 >gi|332357987|gb|EGJ35820.1| N utilization substance protein B [Streptococcus sanguinis SK1056] Length = 143 Score = 134 bits (339), Expect = 3e-30, Method: Composition-based stats. Identities = 33/138 (23%), Positives = 61/138 (44%), Gaps = 6/138 (4%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 R R A QAL ++ G + E + + D + + + + ++ G Sbjct: 9 RRGLRQRAFQALMSLEYEGD-----LVEACRFAYSYDKDEEADKAVEADIPAFLLNLVSG 63 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135 V+ K +D I+ L + W+ RL ++ +ILR G+ E+ E P V ++E + ++ Sbjct: 64 VVQSKDDLDKKIAQHLKKGWTVDRLTLVEKNILRLGIFEITEF-DTPQLVAVNEAIELSK 122 Query: 136 DFFYGDEPKFINAVLDKV 153 F KFIN +L + Sbjct: 123 QFSDEKSSKFINGILSQF 140 >gi|288549985|ref|ZP_05968867.2| transcription antitermination factor NusB [Enterobacter cancerogenus ATCC 35316] gi|288316874|gb|EFC55812.1| transcription antitermination factor NusB [Enterobacter cancerogenus ATCC 35316] Length = 118 Score = 134 bits (339), Expect = 3e-30, Method: Composition-based stats. Identities = 30/131 (22%), Positives = 57/131 (43%), Gaps = 13/131 (9%) Query: 32 IIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCL 91 + ++ ++ + + D VD+ +FR ++ GV ++D L+ L Sbjct: 1 MSHNDIADVEYQFLSEQDVKD-----------VDVLYFRELLSGVATNSAYLDGLMKPYL 49 Query: 92 TEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLD 151 + L + ++LR + EL + VP +V I+E + +A F D KF+N VLD Sbjct: 50 SR--LLEELGQVEKAVLRIALFELSKRDDVPYKVAINEAIELAKTFGAEDSHKFVNGVLD 107 Query: 152 KVSRKEEIKRS 162 K + + Sbjct: 108 KAAPAIRPHKK 118 >gi|6580774|gb|AAF18280.1| N-utilization substance protein B [Zymomonas mobilis subsp. mobilis ZM4] Length = 129 Score = 134 bits (339), Expect = 3e-30, Method: Composition-based stats. Identities = 44/132 (33%), Positives = 69/132 (52%), Gaps = 3/132 (2%) Query: 32 IIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCL 91 + ++ E+ YR A E ++ Y + +F I+ GV R + ID +IS L Sbjct: 1 MEKTPLNILLDEFHQYRLGATIE---DATYTKAEPSFFDDIVRGVGTRCEEIDRVISENL 57 Query: 92 TEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLD 151 +E+WS RLD + ILRAG EL+ VP +ISEY+ +A+ F+ E F+N +LD Sbjct: 58 SERWSLDRLDRPMRQILRAGTYELLARPDVPTATVISEYIDVANAFYDRQEKNFVNGLLD 117 Query: 152 KVSRKEEIKRSG 163 V++K + Sbjct: 118 TVAKKLRSSNNA 129 >gi|56477452|ref|YP_159041.1| transcription antitermination protein NusB [Aromatoleum aromaticum EbN1] gi|81598767|sp|Q5P3H4|NUSB_AZOSE RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|56313495|emb|CAI08140.1| N utilization substance protein B,transcription termination factor [Aromatoleum aromaticum EbN1] Length = 145 Score = 134 bits (339), Expect = 3e-30, Method: Composition-based stats. Identities = 28/139 (20%), Positives = 54/139 (38%), Gaps = 13/139 (9%) Query: 21 LAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRK 80 A+Q +YQ + S + + S + D E F ++ G ++ Sbjct: 12 EFALQGIYQWLLSANSM-----------LLIEEHVSQVSGFDKADRELFISLLRGTLNNV 60 Query: 81 QHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYG 140 + + + + L + +IL EL P VII+E + +A + Sbjct: 61 DDLQAEFAPFIHR--AVHELSPVERAILLLATHELKHNLDTPYRVIINEAIELAKSYGGT 118 Query: 141 DEPKFINAVLDKVSRKEEI 159 D +F+N VLDK++ + + Sbjct: 119 DGHRFVNGVLDKLATQLRV 137 >gi|322390165|ref|ZP_08063697.1| N utilization substance protein B [Streptococcus parasanguinis ATCC 903] gi|321143125|gb|EFX38571.1| N utilization substance protein B [Streptococcus parasanguinis ATCC 903] Length = 143 Score = 134 bits (339), Expect = 3e-30, Method: Composition-based stats. Identities = 37/142 (26%), Positives = 58/142 (40%), Gaps = 8/142 (5%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 R R A QAL ++ G E RF + D+ + ++ G Sbjct: 10 RRDLRERAFQALMALEYDGDIV-------EACRFAYLHDKDLAEDKEVDLPAFLMNLVTG 62 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135 V K +D I L W+ RL ++ +ILR G+ E+ E P V ++E V +A Sbjct: 63 VYQSKDQLDQQIGQHLKTGWTVERLTLVEKNILRLGIYEMTEF-DTPQIVAVNEAVELAK 121 Query: 136 DFFYGDEPKFINAVLDKVSRKE 157 F +F+N VL + +E Sbjct: 122 AFSDETSSRFVNGVLSQFVTEE 143 >gi|291550246|emb|CBL26508.1| transcription antitermination factor NusB [Ruminococcus torques L2-14] Length = 139 Score = 134 bits (339), Expect = 4e-30, Method: Composition-based stats. Identities = 41/143 (28%), Positives = 66/143 (46%), Gaps = 10/143 (6%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 R R + L+QI+ E+ + E Y + D D E+ + Sbjct: 3 RKELREHIFKMLFQIEFN--DPQEMPEQIEYYFSTLEDAADK-------DKEYIKRKYAA 53 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135 V+++ + ID LI++ + W +R++ + SILR V E+ VPV V I+E V + Sbjct: 54 VLEKTEEIDELINAN-AKGWKTTRMNKVDLSILRLAVYEMKWDDEVPVGVAINEAVELTK 112 Query: 136 DFFYGDEPKFINAVLDKVSRKEE 158 F + P FIN VL K++R E Sbjct: 113 TFSSDEAPSFINGVLGKIARSLE 135 >gi|291300632|ref|YP_003511910.1| NusB antitermination factor [Stackebrandtia nassauensis DSM 44728] gi|290569852|gb|ADD42817.1| NusB antitermination factor [Stackebrandtia nassauensis DSM 44728] Length = 147 Score = 134 bits (338), Expect = 4e-30, Method: Composition-based stats. Identities = 40/143 (27%), Positives = 59/143 (41%), Gaps = 8/143 (5%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 R AR AV LY+ + ++ + +L V + E+ ++ G Sbjct: 12 RRKARKRAVDVLYEAEQRDEPIRRVLEDRR--------KLAVTDPQMPGIPEYTFELVDG 63 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135 V + +D +I+ CL W R+ + +ILR EL V V ISE V IA Sbjct: 64 VAEYLDEVDDVIARCLHSGWYLDRIAAVDRNILRVAAFELRYREDVDAAVAISEAVKIAE 123 Query: 136 DFFYGDEPKFINAVLDKVSRKEE 158 D P F+N VL VS E+ Sbjct: 124 VLCGEDSPAFVNGVLQSVSELEK 146 >gi|327469227|gb|EGF14699.1| N utilization substance protein B [Streptococcus sanguinis SK330] gi|332363805|gb|EGJ41584.1| N utilization substance protein B [Streptococcus sanguinis SK355] Length = 143 Score = 134 bits (338), Expect = 4e-30, Method: Composition-based stats. Identities = 33/138 (23%), Positives = 61/138 (44%), Gaps = 6/138 (4%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 R R A QAL ++ G + E + + D + + + + ++ G Sbjct: 9 RRGLRQRAFQALMSLEYEGD-----LVEACRFAYSYDKDEEADKAAEADIPAFLLNLVSG 63 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135 V+ K +D I+ L + W+ RL ++ +ILR G+ E+ E P V ++E + ++ Sbjct: 64 VVQSKDDLDKKIAQHLKKGWTVDRLTLVEKNILRLGIFEITEF-DTPQLVAVNEAIELSK 122 Query: 136 DFFYGDEPKFINAVLDKV 153 F KFIN +L + Sbjct: 123 QFSDEKSSKFINGILSQF 140 >gi|169794295|ref|YP_001712088.1| transcription antitermination protein NusB [Acinetobacter baumannii AYE] gi|184159907|ref|YP_001848246.1| transcription antitermination protein NusB [Acinetobacter baumannii ACICU] gi|213159130|ref|YP_002321128.1| transcription antitermination factor NusB [Acinetobacter baumannii AB0057] gi|215481852|ref|YP_002324034.1| transcription antitermination factor NusB [Acinetobacter baumannii AB307-0294] gi|239502815|ref|ZP_04662125.1| transcription antitermination protein NusB [Acinetobacter baumannii AB900] gi|260557847|ref|ZP_05830060.1| transcription antitermination factor NusB [Acinetobacter baumannii ATCC 19606] gi|332850100|ref|ZP_08432487.1| transcription antitermination factor NusB [Acinetobacter baumannii 6013150] gi|332871452|ref|ZP_08439969.1| transcription antitermination factor NusB [Acinetobacter baumannii 6013113] gi|332873342|ref|ZP_08441296.1| transcription antitermination factor NusB [Acinetobacter baumannii 6014059] gi|226737436|sp|B7GUW2|NUSB_ACIB3 RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|226737437|sp|B7I252|NUSB_ACIB5 RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|238685542|sp|A3MA35|NUSB_ACIBT RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|238688080|sp|B0V9X4|NUSB_ACIBY RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|238691018|sp|B2I2B2|NUSB_ACIBC RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|169147222|emb|CAM85081.1| transcription termination, L factor (N utilization substance protein B) [Acinetobacter baumannii AYE] gi|183211501|gb|ACC58899.1| Transcription termination factor [Acinetobacter baumannii ACICU] gi|193078716|gb|ABO13779.2| transcription termination L factor [Acinetobacter baumannii ATCC 17978] gi|213058290|gb|ACJ43192.1| transcription antitermination factor NusB [Acinetobacter baumannii AB0057] gi|213988308|gb|ACJ58607.1| transcription antitermination factor NusB [Acinetobacter baumannii AB307-0294] gi|260408638|gb|EEX01943.1| transcription antitermination factor NusB [Acinetobacter baumannii ATCC 19606] gi|322509823|gb|ADX05277.1| nusB [Acinetobacter baumannii 1656-2] gi|323519833|gb|ADX94214.1| transcription antitermination protein NusB [Acinetobacter baumannii TCDC-AB0715] gi|332730949|gb|EGJ62255.1| transcription antitermination factor NusB [Acinetobacter baumannii 6013150] gi|332731489|gb|EGJ62779.1| transcription antitermination factor NusB [Acinetobacter baumannii 6013113] gi|332738405|gb|EGJ69278.1| transcription antitermination factor NusB [Acinetobacter baumannii 6014059] Length = 149 Score = 134 bits (338), Expect = 4e-30, Method: Composition-based stats. Identities = 34/133 (25%), Positives = 60/133 (45%), Gaps = 13/133 (9%) Query: 22 AAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQ 81 AVQ +Y+ + EI + E+ VDL ++ ++ V+ + + Sbjct: 18 FAVQGIYEWQMSHNPVHEIEA-----------RTRAENAMHKVDLNYYHELLTQVIAQHE 66 Query: 82 HIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGD 141 +D L+ L + LD + + LR G EL + +P V++ E + +A F D Sbjct: 67 DLDALLIPVLDRE--IDALDGVELATLRLGAYELRDHLEIPYRVVLDEAIELAKHFGGAD 124 Query: 142 EPKFINAVLDKVS 154 K+IN VLD++S Sbjct: 125 SHKYINGVLDRLS 137 >gi|169634846|ref|YP_001708582.1| transcription antitermination protein NusB [Acinetobacter baumannii SDF] gi|238688150|sp|B0VPT9|NUSB_ACIBS RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|169153638|emb|CAP02830.1| transcription termination, L factor (N utilization substance protein B) [Acinetobacter baumannii] Length = 149 Score = 134 bits (338), Expect = 4e-30, Method: Composition-based stats. Identities = 34/133 (25%), Positives = 60/133 (45%), Gaps = 13/133 (9%) Query: 22 AAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQ 81 AVQ +Y+ + EI + E+ VDL ++ ++ V+ + + Sbjct: 18 FAVQGIYEWQMSHNPVHEIEA-----------RTRAENAMHKVDLNYYHELLTQVIAQHE 66 Query: 82 HIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGD 141 +D L+ L + LD + + LR G EL + +P V++ E + +A F D Sbjct: 67 DLDALLIPVLDRE--IDALDGVELATLRLGAYELRDHLEIPYRVVLDEAIELAKHFGGAD 124 Query: 142 EPKFINAVLDKVS 154 K+IN VLD++S Sbjct: 125 SHKYINGVLDRLS 137 >gi|148993974|ref|ZP_01823344.1| transcription antitermination factor NusB [Streptococcus pneumoniae SP9-BS68] gi|168488122|ref|ZP_02712321.1| transcription antitermination factor NusB [Streptococcus pneumoniae SP195] gi|225858284|ref|YP_002739794.1| transcription antitermination protein NusB [Streptococcus pneumoniae 70585] gi|254772657|sp|C1C5G8|NUSB_STRP7 RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|147927563|gb|EDK78590.1| transcription antitermination factor NusB [Streptococcus pneumoniae SP9-BS68] gi|183573223|gb|EDT93751.1| transcription antitermination factor NusB [Streptococcus pneumoniae SP195] gi|225721195|gb|ACO17049.1| transcription antitermination factor NusB [Streptococcus pneumoniae 70585] gi|301793671|emb|CBW36056.1| N utilization substance protein B homolog (NusB protein) [Streptococcus pneumoniae INV104] gi|332075276|gb|EGI85746.1| transcription antitermination factor NusB [Streptococcus pneumoniae GA17570] Length = 140 Score = 134 bits (338), Expect = 4e-30, Method: Composition-based stats. Identities = 36/143 (25%), Positives = 63/143 (44%), Gaps = 11/143 (7%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 R R A QAL ++ G + RF + + V L + ++ G Sbjct: 9 RRQLRKCAFQALMSLEF-GTNVET------ACRFAYTHDREDTDVQLPA---FLIDLVSG 58 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135 V +K+ +D I+ L W+ RL ++ ++LR GV E+ P V ++E + +A Sbjct: 59 VQAKKEELDKQITQHLKVGWTIERLTLVERNLLRLGVFEITSF-DTPQLVAVNEAIELAK 117 Query: 136 DFFYGDEPKFINAVLDKVSRKEE 158 DF +FIN +L + +E+ Sbjct: 118 DFSDQKSARFINGLLSQFVTEEQ 140 >gi|269216070|ref|ZP_06159924.1| transcription antitermination factor NusB [Slackia exigua ATCC 700122] gi|269130329|gb|EEZ61407.1| transcription antitermination factor NusB [Slackia exigua ATCC 700122] Length = 218 Score = 134 bits (338), Expect = 4e-30, Method: Composition-based stats. Identities = 43/145 (29%), Positives = 72/145 (49%), Gaps = 14/145 (9%) Query: 20 RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79 R +A LYQ +IIG I+ E ++ E+ E+ R+++ G Sbjct: 13 RRSAASVLYQSEIIGKPVDRILEE---------GDIPEEAGL----NEYGRLLLLGFSAH 59 Query: 80 KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139 + ID +IS + W+ +R+ M+ +LR V E+ +VP+ V I+E V IA +F Sbjct: 60 RAEIDRIISER-SANWAVNRMPMVDRELLRITVYEMKYVDAVPIPVSINEAVEIAKEFGG 118 Query: 140 GDEPKFINAVLDKVSRKEEIKRSGC 164 D +FIN +L +V+R + + SG Sbjct: 119 DDSYRFINGLLGRVARDLDEQASGS 143 >gi|45656304|ref|YP_000390.1| transcription antitermination protein NusB [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] gi|45599538|gb|AAS69027.1| transcription termination factor [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] Length = 126 Score = 134 bits (338), Expect = 4e-30, Method: Composition-based stats. Identities = 38/138 (27%), Positives = 69/138 (50%), Gaps = 13/138 (9%) Query: 26 ALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDL 85 ALYQ+++ E++ ++ Y + E + ++ I++GV+ ++ ID Sbjct: 2 ALYQLELTQPPLKEVLK-FKWYDKKTEPE----------ERDFAVSIVNGVVKNQEQIDT 50 Query: 86 LISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKF 145 LI ++ W FSR+ ++ +ILR + L+ VP V I E V + +F + +F Sbjct: 51 LIKKY-SKNWDFSRISIVNKAILRLSIYALLYTWEVPKNVTIDEAVELTKEFESEESARF 109 Query: 146 INAVLDKVSRKEEIKRSG 163 +N VLD + + EIK G Sbjct: 110 VNGVLDAILK-NEIKSDG 126 >gi|261380112|ref|ZP_05984685.1| transcription antitermination factor NusB [Neisseria subflava NJ9703] gi|284797333|gb|EFC52680.1| transcription antitermination factor NusB [Neisseria subflava NJ9703] Length = 142 Score = 134 bits (338), Expect = 4e-30, Method: Composition-based stats. Identities = 41/155 (26%), Positives = 60/155 (38%), Gaps = 16/155 (10%) Query: 12 LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71 + R AR AVQA+YQ I + EI S ++D E F Sbjct: 1 MKSPRRRARELAVQAIYQAGINKTAAPEIAKNIREL-----------SQAPNMDEELFNK 49 Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131 + G + IS L L I ++L EL P VII+E + Sbjct: 50 LFFGAQTHAEEYMEKISPLLDRDEK--DLSPIERAVLLVACHELSTMPETPYPVIINEAI 107 Query: 132 CIAHDFFYGDEPKFINAVLDKVS---RKEEIKRSG 163 + F D KF+N +LD+++ R +E +R G Sbjct: 108 EVTKTFGGTDGHKFVNGILDQLASRIRPDEPRRKG 142 >gi|225573684|ref|ZP_03782439.1| hypothetical protein RUMHYD_01880 [Blautia hydrogenotrophica DSM 10507] gi|225038977|gb|EEG49223.1| hypothetical protein RUMHYD_01880 [Blautia hydrogenotrophica DSM 10507] Length = 145 Score = 134 bits (338), Expect = 5e-30, Method: Composition-based stats. Identities = 36/141 (25%), Positives = 63/141 (44%), Gaps = 10/141 (7%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 R R + L+ + +T E + + T F ELD D + + Sbjct: 13 RSKIREHIFKLLF---MSQFNTEEEMPQQLTIYFNELEELD------ESDRAYMQEKYEQ 63 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135 V+ + ID L++ L++ W SR+ + + LR V EL +P +V I+E V +A Sbjct: 64 VISHLKEIDELLNQ-LSKGWKTSRMARVDLTALRLSVYELKYEEEIPTKVSINEAVELAK 122 Query: 136 DFFYGDEPKFINAVLDKVSRK 156 F D F+N +L +V+++ Sbjct: 123 RFGGEDSFAFVNGILGRVAKE 143 >gi|15604037|ref|NP_220552.1| transcription antitermination protein NusB [Rickettsia prowazekii str. Madrid E] gi|3860728|emb|CAA14629.1| N UTILIZATION SUBSTANCE PROTEIN B (nusB) [Rickettsia prowazekii] Length = 174 Score = 134 bits (338), Expect = 5e-30, Method: Composition-based stats. Identities = 39/146 (26%), Positives = 79/146 (54%), Gaps = 1/146 (0%) Query: 14 HRRGIARLAAVQALYQ-IDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVI 72 +++ IAR+AAVQALYQ I +I+ ++ ++ + + + F+++ Sbjct: 26 NKKSIARIAAVQALYQNILQNNYDMYDIMQNILACYHSNNSIDLPKNFKISLSISHFKML 85 Query: 73 IHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVC 132 + V + +D +I + LT + ++L ++LR + EL+ C + P +V+I+EY Sbjct: 86 VKSVFENINKLDEIIDNHLTNAKDSVHMPILLRALLRVSICELLFCSTTPAKVVINEYTD 145 Query: 133 IAHDFFYGDEPKFINAVLDKVSRKEE 158 IA+D E F+N++LDK++++ Sbjct: 146 IANDLLNEHEIGFVNSILDKIAQENN 171 >gi|325690389|gb|EGD32393.1| N utilization substance protein B [Streptococcus sanguinis SK115] Length = 143 Score = 134 bits (338), Expect = 5e-30, Method: Composition-based stats. Identities = 33/138 (23%), Positives = 60/138 (43%), Gaps = 6/138 (4%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 R R A QAL ++ G + E + + D + + + ++ G Sbjct: 9 RRGLRQRAFQALMSLEYEGD-----LVEACRFAYSYDKDEEACKAAEADIPAFLLNLVSG 63 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135 V+ K +D I+ L + W+ RL ++ +ILR G+ E+ E P V ++E + ++ Sbjct: 64 VVQSKDDLDKKIAQHLKKGWTVDRLTLVEKNILRLGIFEITEF-DTPQLVAVNEAIELSK 122 Query: 136 DFFYGDEPKFINAVLDKV 153 F KFIN +L + Sbjct: 123 QFSDEKSSKFINGILSQF 140 >gi|119896608|ref|YP_931821.1| transcription antitermination protein NusB [Azoarcus sp. BH72] gi|166215662|sp|A1K279|NUSB_AZOSB RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|119669021|emb|CAL92934.1| putative N utilization substance protein B [Azoarcus sp. BH72] Length = 155 Score = 134 bits (338), Expect = 5e-30, Method: Composition-based stats. Identities = 33/134 (24%), Positives = 56/134 (41%), Gaps = 12/134 (8%) Query: 21 LAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRK 80 A+Q +YQ + G S + + E + + VD E F +++ G +D Sbjct: 12 ELALQGVYQWLLSGNSPQVVEAHVEA----------EAADFDKVDRELFVMLLRGTLDNV 61 Query: 81 QHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYG 140 + S + L I +IL G EL P V+I+E + +A + Sbjct: 62 GALQDEFSPFIHR--PIEELSPIERAILLLGTHELKHNIETPYRVVINEAIELAKAYGGT 119 Query: 141 DEPKFINAVLDKVS 154 D +F+N VLDK++ Sbjct: 120 DGHRFVNGVLDKLA 133 >gi|327330421|gb|EGE72170.1| n utilization substance protein B-like protein [Propionibacterium acnes HL097PA1] Length = 261 Score = 134 bits (337), Expect = 5e-30, Method: Composition-based stats. Identities = 31/138 (22%), Positives = 63/138 (45%), Gaps = 14/138 (10%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 R AR A+ L++ D+IG E+++ V+ + + ++ G Sbjct: 39 RSKARKQALDILFEADLIGTDPLEVLAAR-------------PGVFTNPVRPFAADLVRG 85 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135 V + +D +++ CL+E W+ +R+ + + R G E++ P +ISE + ++ Sbjct: 86 VAATQVGLDSVLTDCLSEGWTLARMPRVDRILARLGAFEILHT-DTPNPAVISEAIELSE 144 Query: 136 DFFYGDEPKFINAVLDKV 153 +F D F+N +L V Sbjct: 145 EFSTDDSAPFLNGLLGAV 162 >gi|72161498|ref|YP_289155.1| transcription antitermination protein NusB [Thermobifida fusca YX] gi|119390842|sp|Q47QY5|NUSB_THEFY RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|71915230|gb|AAZ55132.1| NusB antitermination factor [Thermobifida fusca YX] Length = 142 Score = 134 bits (337), Expect = 5e-30, Method: Composition-based stats. Identities = 39/147 (26%), Positives = 70/147 (47%), Gaps = 14/147 (9%) Query: 11 KLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFR 70 + R AR+ AV+ LY+ ++ G +E+I R A TE + E+ Sbjct: 5 RRRGSRHKARVRAVEILYEAEVRGVPVSEVIE-----RRRAQTEPPIN--------EFTE 51 Query: 71 VIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEY 130 + V + + ID L+ + W+ R+ ++ +ILR GV EL+ +P V I+E Sbjct: 52 QLATRVDEHRARIDELLETY-AIGWTLDRMPVVDRNILRIGVYELLWADDIPDGVAIAEA 110 Query: 131 VCIAHDFFYGDEPKFINAVLDKVSRKE 157 V +A + + P F+N +L ++ K+ Sbjct: 111 VAMAKELSTDESPVFVNGLLSRLMEKK 137 >gi|213691632|ref|YP_002322218.1| NusB antitermination factor [Bifidobacterium longum subsp. infantis ATCC 15697] gi|254772616|sp|B7GPW0|NUSB_BIFLI RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|213523093|gb|ACJ51840.1| NusB antitermination factor [Bifidobacterium longum subsp. infantis ATCC 15697] gi|320457719|dbj|BAJ68340.1| transcription antitermination factor NusB [Bifidobacterium longum subsp. infantis ATCC 15697] Length = 187 Score = 134 bits (337), Expect = 5e-30, Method: Composition-based stats. Identities = 32/138 (23%), Positives = 56/138 (40%), Gaps = 12/138 (8%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 R AR A+ LY+ D ++ E + D + I+ G Sbjct: 3 RSTARKRALNTLYEADEKNQDILSLLDERIAHPGAQTPLPD-----------YAIEIVKG 51 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135 V + ++ ID+ + + W R+ ++ +ILR E++ VP +V I E + +A Sbjct: 52 VAEHRRQIDMTLDEH-STGWKVRRMGVVDRNILRIAAWEILFNDDVPDKVAIDEALALAK 110 Query: 136 DFFYGDEPKFINAVLDKV 153 D P FI+ +L V Sbjct: 111 TLCDDDSPAFIHGLLSAV 128 >gi|328956982|ref|YP_004374368.1| transcription antitermination protein NusB [Carnobacterium sp. 17-4] gi|328673306|gb|AEB29352.1| transcription antitermination protein NusB [Carnobacterium sp. 17-4] Length = 147 Score = 134 bits (337), Expect = 5e-30, Method: Composition-based stats. Identities = 37/146 (25%), Positives = 67/146 (45%), Gaps = 5/146 (3%) Query: 12 LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71 +S R R A+Q+L+Q+ + E E ++ EL E + V + + Sbjct: 1 MSLTRRDIREKALQSLFQLSANEELSKE---EAMQQALTSEAELADEVETVLV-PSYLDL 56 Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131 ++ GV++++ ID I + L E WS +RL I+R + E++ VP V ++E + Sbjct: 57 LVSGVLEKQDEIDEKIKAHL-ENWSLNRLAKTDLMIIRIAIFEMMYVSDVPDRVALNEAL 115 Query: 132 CIAHDFFYGDEPKFINAVLDKVSRKE 157 I + KF+N VL + + Sbjct: 116 EITKKYSDEKSRKFVNGVLANIVNEN 141 >gi|293392569|ref|ZP_06636889.1| transcription termination/antitermination factor NusB [Serratia odorifera DSM 4582] gi|291424971|gb|EFE98180.1| transcription termination/antitermination factor NusB [Serratia odorifera DSM 4582] Length = 117 Score = 134 bits (337), Expect = 5e-30, Method: Composition-based stats. Identities = 32/130 (24%), Positives = 57/130 (43%), Gaps = 13/130 (10%) Query: 32 IIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCL 91 + ++ ++ T E VD+ +FR ++ GV +D L++ L Sbjct: 1 MSKNDIADVELQFLT-----------EQDVKDVDIAYFRELLSGVAVNAGTLDALMAPYL 49 Query: 92 TEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLD 151 + + L + ++LR + EL VP +V I+E + +A F D KF+N VLD Sbjct: 50 SRQ--LEELGQVEKAVLRIALFELKMREDVPYKVAINEAIELAKTFGAEDSHKFVNGVLD 107 Query: 152 KVSRKEEIKR 161 K + K+ Sbjct: 108 KAAPSIRKKK 117 >gi|323353378|ref|ZP_08087911.1| N utilization substance protein B [Streptococcus sanguinis VMC66] gi|322121324|gb|EFX93087.1| N utilization substance protein B [Streptococcus sanguinis VMC66] gi|327472778|gb|EGF18205.1| N utilization substance protein B [Streptococcus sanguinis SK408] Length = 143 Score = 134 bits (337), Expect = 5e-30, Method: Composition-based stats. Identities = 33/138 (23%), Positives = 61/138 (44%), Gaps = 6/138 (4%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 R R A QAL ++ G + E + + D + + + + ++ G Sbjct: 9 RRGLRQRAFQALMSLEYEGE-----LVEACRFAYSYDKDEEADKAAEADIPAFLLNLVSG 63 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135 V+ K +D I+ L + W+ RL ++ +ILR G+ E+ E P V ++E + ++ Sbjct: 64 VVQSKDDLDKKIAQHLKKGWTVDRLTLVEKNILRLGIFEITEF-DTPQLVAVNEAIELSK 122 Query: 136 DFFYGDEPKFINAVLDKV 153 F KFIN +L + Sbjct: 123 QFSDEKSSKFINGILSQF 140 >gi|315108679|gb|EFT80655.1| transcription antitermination factor NusB [Propionibacterium acnes HL030PA2] Length = 261 Score = 134 bits (337), Expect = 5e-30, Method: Composition-based stats. Identities = 32/138 (23%), Positives = 64/138 (46%), Gaps = 14/138 (10%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 R AR A+ L++ D+IG E+++ V+ + + ++ G Sbjct: 39 RSKARKQALDILFEADLIGTDPLEVLAAR-------------PGVFTNPVRPFAADLVRG 85 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135 V + +D +++ CL+E W+ +R+ + + R GV E++ P +ISE + ++ Sbjct: 86 VAATQVGLDSVLTDCLSEGWTLARMPRVDRILARLGVFEILHT-DTPNPAVISEAIELSE 144 Query: 136 DFFYGDEPKFINAVLDKV 153 +F D F+N +L V Sbjct: 145 EFSTDDSAPFLNGLLGAV 162 >gi|308233793|ref|ZP_07664530.1| NusB antitermination factor [Atopobium vaginae DSM 15829] gi|328943758|ref|ZP_08241223.1| transcription antitermination factor NusB [Atopobium vaginae DSM 15829] gi|327491727|gb|EGF23501.1| transcription antitermination factor NusB [Atopobium vaginae DSM 15829] Length = 239 Score = 134 bits (337), Expect = 5e-30, Method: Composition-based stats. Identities = 37/147 (25%), Positives = 71/147 (48%), Gaps = 14/147 (9%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 R +AR A+Q ++Q + ++++ T ++ LD ++ + + G Sbjct: 13 RTLARSQALQLMFQAESRNMQVCDVLA---TNYLLSEGPLD----------DFGKRLALG 59 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135 + + +D LIS +T W+ +RL + +ILR + E+I+ V + V I+E V +A Sbjct: 60 TDELRDKLDALISRVIT-NWNLNRLLSVDRNILRLALYEMIKVDDVDIAVTINESVNLAK 118 Query: 136 DFFYGDEPKFINAVLDKVSRKEEIKRS 162 + + F+N VL +V+R E R Sbjct: 119 AYGTDESSHFVNGVLGQVARMMENGRD 145 >gi|269956498|ref|YP_003326287.1| NusB antitermination factor [Xylanimonas cellulosilytica DSM 15894] gi|269305179|gb|ACZ30729.1| NusB antitermination factor [Xylanimonas cellulosilytica DSM 15894] Length = 138 Score = 134 bits (337), Expect = 5e-30, Method: Composition-based stats. Identities = 29/139 (20%), Positives = 56/139 (40%), Gaps = 12/139 (8%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 R AR A L++ + ++ + ++ I+ G Sbjct: 4 RTKARKRAADLLFEAEQRRWDAVRLLRDRIETPVSESPVP-----------QYAADIVEG 52 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135 V+ ++ ID L+ + + W+ R+ + ++LR G E++ VP V I E V +A Sbjct: 53 VVAHRERIDELLETY-SNGWTIERMPAVDRALLRIGAWEILFNDDVPDAVAIDEAVDLAA 111 Query: 136 DFFYGDEPKFINAVLDKVS 154 D P F+N +L ++ Sbjct: 112 QLSTDDSPSFVNGLLGRIV 130 >gi|300087424|ref|YP_003757946.1| NusB antitermination factor [Dehalogenimonas lykanthroporepellens BL-DC-9] gi|299527157|gb|ADJ25625.1| NusB antitermination factor [Dehalogenimonas lykanthroporepellens BL-DC-9] Length = 136 Score = 134 bits (337), Expect = 5e-30, Method: Composition-based stats. Identities = 41/141 (29%), Positives = 70/141 (49%), Gaps = 12/141 (8%) Query: 14 HRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVII 73 RR AR+ A+++LY++D+ G ++I E A+ ++E+ + I+ Sbjct: 2 PRRHQARIVALKSLYEVDLTGHDPDKVI---ERRLLFAELGPELET--------LAQSIL 50 Query: 74 HGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCI 133 G + ++ D LI L + +L + +ILR + E+I + VPV V I+E V + Sbjct: 51 AGTLAAREEADSLIYR-LAPTYPVDQLAPVDRNILRLAIYEIIHDNKVPVRVAINEAVEL 109 Query: 134 AHDFFYGDEPKFINAVLDKVS 154 A +F KFIN VL V+ Sbjct: 110 AKEFGSDGSAKFINGVLSSVA 130 >gi|171912809|ref|ZP_02928279.1| NusB antitermination factor [Verrucomicrobium spinosum DSM 4136] Length = 145 Score = 134 bits (337), Expect = 5e-30, Method: Composition-based stats. Identities = 39/155 (25%), Positives = 69/155 (44%), Gaps = 15/155 (9%) Query: 15 RRGIARLAAVQALYQIDIIGCSTTEIISEYET-YRFCADTELDVESVYLHVDLEWFRVII 73 +R R AA+Q L+ D+ G + + T + D ++ Sbjct: 5 KRREGRQAAMQFLFAHDVHGKVEDTDRAAFWTLHSATQDI------------RAHAESLV 52 Query: 74 HGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCI 133 G+ + ID I++ L E + F RL ++ +ILR V E++ VPV V+I+E V I Sbjct: 53 TGIKTHQVQIDDCIAATL-ENFRFERLGVVDRNILRLAVYEMLHT-EVPVPVVINEAVEI 110 Query: 134 AHDFFYGDEPKFINAVLDKVSRKEEIKRSGCVSAI 168 + F F+N VLDK++++ +++ Sbjct: 111 SKVFGDTQTRAFVNGVLDKIAKRIPGRQAPSAPQP 145 >gi|145295740|ref|YP_001138561.1| transcription antitermination protein NusB [Corynebacterium glutamicum R] gi|140845660|dbj|BAF54659.1| hypothetical protein [Corynebacterium glutamicum R] Length = 212 Score = 134 bits (337), Expect = 5e-30, Method: Composition-based stats. Identities = 45/165 (27%), Positives = 73/165 (44%), Gaps = 7/165 (4%) Query: 3 IQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYL 62 + + ++D K R AR+ AV L++ + II + ++ DT V V Sbjct: 1 MSERRQDYKRHGSRYKARMRAVDILFEAESRDVDPVAIIDD--RHKLARDTNPIVAPV-- 56 Query: 63 HVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVP 122 E+ II+GV +D+ ++ + E W+ RL + +ILR E+I VP Sbjct: 57 ---AEYTETIINGVAVELDTLDVFLAEHIAETWTLGRLPSVDRAILRVASWEMIYNTDVP 113 Query: 123 VEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRSGCVSA 167 V I E V IA ++ +INA LD ++ K E R + Sbjct: 114 VTTAIVEAVEIASEYSGDKSSAYINATLDAMASKVETLRERAANP 158 >gi|154502455|ref|ZP_02039515.1| hypothetical protein RUMGNA_00268 [Ruminococcus gnavus ATCC 29149] gi|153796851|gb|EDN79271.1| hypothetical protein RUMGNA_00268 [Ruminococcus gnavus ATCC 29149] Length = 132 Score = 134 bits (337), Expect = 6e-30, Method: Composition-based stats. Identities = 37/139 (26%), Positives = 65/139 (46%), Gaps = 10/139 (7%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 R R + L+QI+ + E + EL + D E+ + + Sbjct: 3 RTELREHIFKMLFQIEFN------TLEEMPKHLELYFEEL---TSAKEKDKEYIQKKLEA 53 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135 V+++ + ID +++ T W SR++ + +ILR V E+ VPV+V I+E V +A Sbjct: 54 VVEKLEEIDAILNEKAT-GWKTSRMNKVDLAILRLAVYEIKWDDDVPVKVAINEAVELAK 112 Query: 136 DFFYGDEPKFINAVLDKVS 154 F + P F+N VL K++ Sbjct: 113 KFSGEEGPAFVNGVLAKIA 131 >gi|313837743|gb|EFS75457.1| transcription antitermination factor NusB [Propionibacterium acnes HL037PA2] gi|314927375|gb|EFS91206.1| transcription antitermination factor NusB [Propionibacterium acnes HL044PA1] gi|314972681|gb|EFT16778.1| transcription antitermination factor NusB [Propionibacterium acnes HL037PA3] gi|328907460|gb|EGG27226.1| transcription antitermination factor NusB [Propionibacterium sp. P08] Length = 256 Score = 134 bits (337), Expect = 6e-30, Method: Composition-based stats. Identities = 33/159 (20%), Positives = 72/159 (45%), Gaps = 19/159 (11%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 R AR A+ L++ D++G E+++ SV+++ + ++ G Sbjct: 32 RSKARKQALDILFEADLMGTDPLEVLAAR-------------PSVFINPVRPFAADLVRG 78 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135 V + +D +++ CL+E W+ R+ + + R G E++ P +ISE + ++ Sbjct: 79 VAATQAGLDSVLADCLSEGWTLDRMPRVDRILARLGTFEILHT-DTPNPAVISEAIELSE 137 Query: 136 DFFYGDEPKFINAVLDKV-----SRKEEIKRSGCVSAIT 169 +F D F+N +L V +R E++ + + + Sbjct: 138 EFSTDDSAPFLNGLLSAVISHGPARVEDLPSDDAIPSSS 176 >gi|315652076|ref|ZP_07905077.1| transcription antitermination factor NusB [Eubacterium saburreum DSM 3986] gi|315485723|gb|EFU76104.1| transcription antitermination factor NusB [Eubacterium saburreum DSM 3986] Length = 150 Score = 134 bits (337), Expect = 6e-30, Method: Composition-based stats. Identities = 39/145 (26%), Positives = 67/145 (46%), Gaps = 4/145 (2%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDV---ESVYLHVDLEWFRVI 72 R + R + L+ +D EI ++ + E DV ++ Y D+E+ R Sbjct: 7 RHLLREHCFKILFSLDFYPEEEAEIQTDNYFESPSLEDEDDVLIHDANYGDGDIEYIRSK 66 Query: 73 IHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVC 132 V D + ID +I+ L++ W R+ + SILR + E+ +PV V I+E V Sbjct: 67 AMLVRDNQAEIDKMITE-LSQGWKLERIGRVEKSILRLAIAEMKYDSDIPVSVAINEAVE 125 Query: 133 IAHDFFYGDEPKFINAVLDKVSRKE 157 +A + + F+NA+L K +E Sbjct: 126 LAKAYGRDESYSFVNAILSKAGVEE 150 >gi|293607587|ref|ZP_06689921.1| conserved hypothetical protein [Achromobacter piechaudii ATCC 43553] gi|292814020|gb|EFF73167.1| conserved hypothetical protein [Achromobacter piechaudii ATCC 43553] Length = 169 Score = 134 bits (337), Expect = 6e-30, Method: Composition-based stats. Identities = 39/147 (26%), Positives = 63/147 (42%), Gaps = 12/147 (8%) Query: 24 VQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHI 83 +Q +Y + G T+ E + + L + D +WF+ ++HGV+ + Sbjct: 32 LQGVYAWLLRGGEGTQDAGEIDAH-------LRDTEDFSEADAQWFKTLLHGVLREAPTL 84 Query: 84 DLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEP 143 + + + L + IL G ELI VP +V I+E V +A F D Sbjct: 85 RERFTPYVDR--PLAELSPVEHGILLIGSFELIHHVEVPYKVAINEAVELAKSFGGTDGF 142 Query: 144 KFINAVLDKVSRKEEIKRSGCVSAITQ 170 KF+N VLDK++ R+ V A Q Sbjct: 143 KFVNGVLDKLAADV---RANEVQAAAQ 166 >gi|326790845|ref|YP_004308666.1| NusB antitermination factor [Clostridium lentocellum DSM 5427] gi|326541609|gb|ADZ83468.1| NusB antitermination factor [Clostridium lentocellum DSM 5427] Length = 139 Score = 133 bits (336), Expect = 6e-30, Method: Composition-based stats. Identities = 43/144 (29%), Positives = 63/144 (43%), Gaps = 7/144 (4%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 R AR +Q LY+ G E E Y + E +++ G Sbjct: 3 RRNARELIMQMLYE----GTFHPEEERERILYDQLNAMD-SKEKSANKAIVKFIEDTYFG 57 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135 V + + ID LI+ + WS +R+ + SILR + EL VPV+V ++E V IA Sbjct: 58 VYEHVKEIDALIAGA-AKNWSMARIAKVDLSILRLAIFELQYT-DVPVKVAVNEAVEIAK 115 Query: 136 DFFYGDEPKFINAVLDKVSRKEEI 159 + PKFIN VL V++ E Sbjct: 116 IYSTDKSPKFINGVLGSVTQANEA 139 >gi|51473361|ref|YP_067118.1| transcription antitermination protein NusB [Rickettsia typhi str. Wilmington] gi|51459673|gb|AAU03636.1| transcription termination protein NusB (N utilization substance protein B) [Rickettsia typhi str. Wilmington] Length = 173 Score = 133 bits (336), Expect = 7e-30, Method: Composition-based stats. Identities = 40/146 (27%), Positives = 79/146 (54%), Gaps = 2/146 (1%) Query: 14 HRRGIARLAAVQALYQ-IDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVI 72 +++ IAR+AAVQALYQ I +I+ +L ++ + + + F+++ Sbjct: 26 NKKSIARIAAVQALYQNILQNNYDMYDIMQNILACYHSNSIDL-PKNFKISLSISHFKML 84 Query: 73 IHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVC 132 + V + +D +I + LT + ++L ++LR + EL+ C + P +V+I+EY Sbjct: 85 VKSVFENINKLDEIIDNHLTNDKDPVHMPILLRALLRVSICELLFCSTTPAKVVINEYTD 144 Query: 133 IAHDFFYGDEPKFINAVLDKVSRKEE 158 IA+D E F+N++LDK++++ Sbjct: 145 IANDLLNEHEIGFVNSILDKIAQENN 170 >gi|50842668|ref|YP_055895.1| putative NusB-family protein [Propionibacterium acnes KPA171202] gi|289425085|ref|ZP_06426862.1| transcription antitermination factor NusB [Propionibacterium acnes SK187] gi|289428561|ref|ZP_06430245.1| transcription antitermination factor NusB [Propionibacterium acnes J165] gi|295130747|ref|YP_003581410.1| transcription antitermination factor NusB [Propionibacterium acnes SK137] gi|81611678|sp|Q6A8H8|NUSB_PROAC RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|50840270|gb|AAT82937.1| putative NusB-family protein [Propionibacterium acnes KPA171202] gi|289154063|gb|EFD02751.1| transcription antitermination factor NusB [Propionibacterium acnes SK187] gi|289158255|gb|EFD06474.1| transcription antitermination factor NusB [Propionibacterium acnes J165] gi|291375576|gb|ADD99430.1| transcription antitermination factor NusB [Propionibacterium acnes SK137] gi|313764289|gb|EFS35653.1| transcription antitermination factor NusB [Propionibacterium acnes HL013PA1] gi|313771992|gb|EFS37958.1| transcription antitermination factor NusB [Propionibacterium acnes HL074PA1] gi|313791976|gb|EFS40077.1| transcription antitermination factor NusB [Propionibacterium acnes HL110PA1] gi|313802074|gb|EFS43308.1| transcription antitermination factor NusB [Propionibacterium acnes HL110PA2] gi|313807685|gb|EFS46172.1| transcription antitermination factor NusB [Propionibacterium acnes HL087PA2] gi|313810192|gb|EFS47913.1| transcription antitermination factor NusB [Propionibacterium acnes HL083PA1] gi|313812780|gb|EFS50494.1| transcription antitermination factor NusB [Propionibacterium acnes HL025PA1] gi|313816197|gb|EFS53911.1| transcription antitermination factor NusB [Propionibacterium acnes HL059PA1] gi|313818722|gb|EFS56436.1| transcription antitermination factor NusB [Propionibacterium acnes HL046PA2] gi|313820492|gb|EFS58206.1| transcription antitermination factor NusB [Propionibacterium acnes HL036PA1] gi|313822702|gb|EFS60416.1| transcription antitermination factor NusB [Propionibacterium acnes HL036PA2] gi|313825364|gb|EFS63078.1| transcription antitermination factor NusB [Propionibacterium acnes HL063PA1] gi|313827660|gb|EFS65374.1| transcription antitermination factor NusB [Propionibacterium acnes HL063PA2] gi|313830523|gb|EFS68237.1| transcription antitermination factor NusB [Propionibacterium acnes HL007PA1] gi|313833559|gb|EFS71273.1| transcription antitermination factor NusB [Propionibacterium acnes HL056PA1] gi|313838895|gb|EFS76609.1| transcription antitermination factor NusB [Propionibacterium acnes HL086PA1] gi|314915279|gb|EFS79110.1| transcription antitermination factor NusB [Propionibacterium acnes HL005PA4] gi|314918171|gb|EFS82002.1| transcription antitermination factor NusB [Propionibacterium acnes HL050PA1] gi|314920247|gb|EFS84078.1| transcription antitermination factor NusB [Propionibacterium acnes HL050PA3] gi|314925034|gb|EFS88865.1| transcription antitermination factor NusB [Propionibacterium acnes HL036PA3] gi|314931770|gb|EFS95601.1| transcription antitermination factor NusB [Propionibacterium acnes HL067PA1] gi|314955572|gb|EFS99973.1| transcription antitermination factor NusB [Propionibacterium acnes HL027PA1] gi|314958067|gb|EFT02170.1| transcription antitermination factor NusB [Propionibacterium acnes HL002PA1] gi|314960362|gb|EFT04464.1| transcription antitermination factor NusB [Propionibacterium acnes HL002PA2] gi|314962632|gb|EFT06732.1| transcription antitermination factor NusB [Propionibacterium acnes HL082PA1] gi|314967503|gb|EFT11602.1| transcription antitermination factor NusB [Propionibacterium acnes HL037PA1] gi|314973523|gb|EFT17619.1| transcription antitermination factor NusB [Propionibacterium acnes HL053PA1] gi|314976203|gb|EFT20298.1| transcription antitermination factor NusB [Propionibacterium acnes HL045PA1] gi|314978636|gb|EFT22730.1| transcription antitermination factor NusB [Propionibacterium acnes HL072PA2] gi|314983775|gb|EFT27867.1| transcription antitermination factor NusB [Propionibacterium acnes HL005PA1] gi|314987956|gb|EFT32047.1| transcription antitermination factor NusB [Propionibacterium acnes HL005PA2] gi|314989766|gb|EFT33857.1| transcription antitermination factor NusB [Propionibacterium acnes HL005PA3] gi|315077848|gb|EFT49899.1| transcription antitermination factor NusB [Propionibacterium acnes HL053PA2] gi|315080473|gb|EFT52449.1| transcription antitermination factor NusB [Propionibacterium acnes HL078PA1] gi|315084144|gb|EFT56120.1| transcription antitermination factor NusB [Propionibacterium acnes HL027PA2] gi|315085487|gb|EFT57463.1| transcription antitermination factor NusB [Propionibacterium acnes HL002PA3] gi|315088456|gb|EFT60432.1| transcription antitermination factor NusB [Propionibacterium acnes HL072PA1] gi|315096070|gb|EFT68046.1| transcription antitermination factor NusB [Propionibacterium acnes HL038PA1] gi|315098699|gb|EFT70675.1| transcription antitermination factor NusB [Propionibacterium acnes HL059PA2] gi|315101532|gb|EFT73508.1| transcription antitermination factor NusB [Propionibacterium acnes HL046PA1] gi|315105759|gb|EFT77735.1| transcription antitermination factor NusB [Propionibacterium acnes HL030PA1] gi|327326350|gb|EGE68140.1| n utilization substance protein B-like protein [Propionibacterium acnes HL096PA2] gi|327331775|gb|EGE73512.1| n utilization substance protein B-like protein [Propionibacterium acnes HL096PA3] gi|327443552|gb|EGE90206.1| transcription antitermination factor NusB [Propionibacterium acnes HL013PA2] gi|327445756|gb|EGE92410.1| transcription antitermination factor NusB [Propionibacterium acnes HL043PA2] gi|327448261|gb|EGE94915.1| transcription antitermination factor NusB [Propionibacterium acnes HL043PA1] gi|327450617|gb|EGE97271.1| transcription antitermination factor NusB [Propionibacterium acnes HL087PA3] gi|327453305|gb|EGE99959.1| transcription antitermination factor NusB [Propionibacterium acnes HL092PA1] gi|327454045|gb|EGF00700.1| transcription antitermination factor NusB [Propionibacterium acnes HL083PA2] gi|328753303|gb|EGF66919.1| transcription antitermination factor NusB [Propionibacterium acnes HL025PA2] gi|328754035|gb|EGF67651.1| transcription antitermination factor NusB [Propionibacterium acnes HL087PA1] gi|328754763|gb|EGF68379.1| transcription antitermination factor NusB [Propionibacterium acnes HL020PA1] gi|328760688|gb|EGF74254.1| n utilization substance protein B-like protein [Propionibacterium acnes HL099PA1] gi|332675591|gb|AEE72407.1| N utilization substance protein B [Propionibacterium acnes 266] Length = 261 Score = 133 bits (336), Expect = 7e-30, Method: Composition-based stats. Identities = 31/138 (22%), Positives = 63/138 (45%), Gaps = 14/138 (10%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 R AR A+ L++ D+IG E+++ V+ + + ++ G Sbjct: 39 RSKARKQALDILFEADLIGTDPLEVLAAR-------------PGVFTNPVRPFAADLVRG 85 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135 V + +D +++ CL+E W+ +R+ + + R G E++ P +ISE + ++ Sbjct: 86 VAATQVGLDSVLTDCLSEGWTLARMPRVDRILARLGAFEILHT-DTPNPAVISEAIELSE 144 Query: 136 DFFYGDEPKFINAVLDKV 153 +F D F+N +L V Sbjct: 145 EFSTDDSAPFLNGLLGAV 162 >gi|312869983|ref|ZP_07730122.1| transcription antitermination factor NusB [Lactobacillus oris PB013-T2-3] gi|311094568|gb|EFQ52873.1| transcription antitermination factor NusB [Lactobacillus oris PB013-T2-3] Length = 136 Score = 133 bits (336), Expect = 7e-30, Method: Composition-based stats. Identities = 37/148 (25%), Positives = 58/148 (39%), Gaps = 12/148 (8%) Query: 12 LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71 +S R R A Q L+ + + I + + E+ + Sbjct: 1 MSLTRHALREEAFQVLFALQTNPDADLATIYQSIPHHDER------------AIPEYVQR 48 Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131 + GV DR+ +D ISS L W+ RL ILR + EL VP V I+E + Sbjct: 49 LATGVSDRQAALDGQISSLLASDWTIDRLAKADLIILRLALYELQYVEEVPTPVAINEAL 108 Query: 132 CIAHDFFYGDEPKFINAVLDKVSRKEEI 159 +A +F KFIN L + ++ + Sbjct: 109 ELAKEFSNDQSRKFINGALGRFEKENNL 136 >gi|320105797|ref|YP_004181387.1| NusB antitermination factor [Terriglobus saanensis SP1PR4] gi|319924318|gb|ADV81393.1| NusB antitermination factor [Terriglobus saanensis SP1PR4] Length = 146 Score = 133 bits (336), Expect = 8e-30, Method: Composition-based stats. Identities = 37/147 (25%), Positives = 68/147 (46%), Gaps = 7/147 (4%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLE-WFRVIIH 74 R +R A+Q L+Q D+ S+ ++ + R E + + D + + + Sbjct: 4 RRKSRELAMQMLFQADLGKQSSEDVQKSFWNAR-----EDEAGKATIDADTQGFAEDLFR 58 Query: 75 GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134 M +++ ID L+ + W +R+ + ++LR V E+I S P +II+E + I Sbjct: 59 VAMVKQEEIDTLLEEH-AQNWRVARMAAVDRNLLRMAVAEMIGYPSTPHPIIINEALEIG 117 Query: 135 HDFFYGDEPKFINAVLDKVSRKEEIKR 161 + + F+N VLD V+R KR Sbjct: 118 RRYAAPESVNFLNGVLDAVARALMAKR 144 >gi|19552830|ref|NP_600832.1| transcription antitermination protein NusB [Corynebacterium glutamicum ATCC 13032] gi|62390501|ref|YP_225903.1| transcription antitermination protein NusB [Corynebacterium glutamicum ATCC 13032] gi|24638069|sp|Q8NQ33|NUSB_CORGL RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|21324387|dbj|BAB99011.1| Transcription termination factor [Corynebacterium glutamicum ATCC 13032] gi|41325838|emb|CAF21627.1| Transcription termination factor [Corynebacterium glutamicum ATCC 13032] Length = 227 Score = 133 bits (336), Expect = 8e-30, Method: Composition-based stats. Identities = 45/165 (27%), Positives = 73/165 (44%), Gaps = 7/165 (4%) Query: 3 IQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYL 62 + + ++D K R AR+ AV L++ + II + ++ DT V V Sbjct: 1 MSERRQDYKRHGSRYKARMRAVDILFEAESRDVDPVAIIDD--RHKLARDTNPIVAPV-- 56 Query: 63 HVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVP 122 E+ II+GV +D+ ++ + E W+ RL + +ILR E+I VP Sbjct: 57 ---AEYTETIINGVAVELDTLDVFLAEHIAETWTLGRLPSVDRAILRVASWEMIYNADVP 113 Query: 123 VEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRSGCVSA 167 V I E V IA ++ +INA LD ++ K E R + Sbjct: 114 VTTAIVEAVEIASEYSGDKSSAYINATLDAMASKVETLRERAANP 158 >gi|296454538|ref|YP_003661681.1| NusB antitermination factor [Bifidobacterium longum subsp. longum JDM301] gi|296183970|gb|ADH00852.1| NusB antitermination factor [Bifidobacterium longum subsp. longum JDM301] Length = 187 Score = 133 bits (335), Expect = 8e-30, Method: Composition-based stats. Identities = 32/138 (23%), Positives = 56/138 (40%), Gaps = 12/138 (8%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 R AR A+ LY+ D ++ E + D + I+ G Sbjct: 3 RSTARKRALNTLYEADEKSQDILSLLDERIAHPGAQTPLPD-----------YAIEIVKG 51 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135 V + ++ ID+ + + W R+ ++ +ILR E++ VP +V I E + +A Sbjct: 52 VAEHRRQIDMTLDEH-STGWKVRRMGVVDRNILRIAAWEILFNDDVPDKVAIDEALALAK 110 Query: 136 DFFYGDEPKFINAVLDKV 153 D P FI+ +L V Sbjct: 111 TLCDDDSPAFIHGLLSAV 128 >gi|23336051|ref|ZP_00121280.1| COG0781: Transcription termination factor [Bifidobacterium longum DJO10A] gi|23464693|ref|NP_695296.1| NusB antitermination protein [Bifidobacterium longum NCC2705] gi|189438946|ref|YP_001954027.1| transcription termination factor [Bifidobacterium longum DJO10A] gi|227546799|ref|ZP_03976848.1| NusB antitermination factor [Bifidobacterium longum subsp. infantis ATCC 55813] gi|239620779|ref|ZP_04663810.1| transcription antitermination factor NusB [Bifidobacterium longum subsp. infantis CCUG 52486] gi|312132387|ref|YP_003999726.1| nusb [Bifidobacterium longum subsp. longum BBMN68] gi|322691569|ref|YP_004221139.1| transcription antitermination factor NusB [Bifidobacterium longum subsp. longum JCM 1217] gi|32171480|sp|Q8G817|NUSB_BIFLO RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|238692035|sp|B3DQ30|NUSB_BIFLD RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|23325257|gb|AAN23932.1| NusB antitermination protein [Bifidobacterium longum NCC2705] gi|189427381|gb|ACD97529.1| Transcription termination factor [Bifidobacterium longum DJO10A] gi|227212761|gb|EEI80642.1| NusB antitermination factor [Bifidobacterium longum subsp. infantis ATCC 55813] gi|239516355|gb|EEQ56222.1| transcription antitermination factor NusB [Bifidobacterium longum subsp. infantis CCUG 52486] gi|291516175|emb|CBK69791.1| transcription antitermination factor NusB [Bifidobacterium longum subsp. longum F8] gi|311772581|gb|ADQ02069.1| NusB [Bifidobacterium longum subsp. longum BBMN68] gi|320456425|dbj|BAJ67047.1| transcription antitermination factor NusB [Bifidobacterium longum subsp. longum JCM 1217] Length = 190 Score = 133 bits (335), Expect = 8e-30, Method: Composition-based stats. Identities = 32/138 (23%), Positives = 56/138 (40%), Gaps = 12/138 (8%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 R AR A+ LY+ D ++ E + D + I+ G Sbjct: 3 RSTARKRALNTLYEADEKSQDILSLLDERIAHPGAQTPLPD-----------YAIEIVKG 51 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135 V + ++ ID+ + + W R+ ++ +ILR E++ VP +V I E + +A Sbjct: 52 VAEHRRQIDMTLDEH-STGWKVRRMGVVDRNILRIAAWEILFTDDVPDKVAIDEALALAK 110 Query: 136 DFFYGDEPKFINAVLDKV 153 D P FI+ +L V Sbjct: 111 TLCDDDSPAFIHGLLSAV 128 >gi|224373796|ref|YP_002608168.1| transcription antitermination factor NusB [Nautilia profundicola AmH] gi|223589865|gb|ACM93601.1| transcription antitermination factor NusB [Nautilia profundicola AmH] Length = 136 Score = 133 bits (335), Expect = 9e-30, Method: Composition-based stats. Identities = 38/141 (26%), Positives = 68/141 (48%), Gaps = 13/141 (9%) Query: 17 GIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGV 76 AR A +Q LY ++ + I +++ E+ + E+ + ++ GV Sbjct: 5 THAREAVIQTLYAQEMGN---DQAIEQFD--------EILKDKKVKGSKAEFAKKLLKGV 53 Query: 77 MDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHD 136 + ID +I + L W F RLD + ILR G+ E++ P +++I E V IA + Sbjct: 54 SEHIDKIDEIIKNHLI-DWDFERLDKVDKQILRVGIYEILYT-DTPYQIVIDEAVKIAKN 111 Query: 137 FFYGDEPKFINAVLDKVSRKE 157 F FIN +LD+V++++ Sbjct: 112 FSEDKAKSFINGILDRVAKEK 132 >gi|50086525|ref|YP_048035.1| transcription antitermination protein NusB [Acinetobacter sp. ADP1] gi|81612974|sp|Q6F6V2|NUSB_ACIAD RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|49532501|emb|CAG70213.1| transcription termination, L factor (N utilization substance protein B) [Acinetobacter sp. ADP1] Length = 149 Score = 133 bits (335), Expect = 9e-30, Method: Composition-based stats. Identities = 36/142 (25%), Positives = 66/142 (46%), Gaps = 14/142 (9%) Query: 22 AAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQ 81 AVQ +Y+ + EI + VE+ VDL ++ ++ V+ + + Sbjct: 18 FAVQGIYEWQMSRNPVHEIEA-----------RTRVENAMHKVDLGYYHELLTQVVAQHE 66 Query: 82 HIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGD 141 +D L+ L + + LD + + LR G EL + +P V++ E + +A F D Sbjct: 67 TLDTLLVPVLDRE--LNALDGVELATLRLGAYELRDHLEIPYRVVLDEAIELAKHFGGAD 124 Query: 142 EPKFINAVLDKVS-RKEEIKRS 162 K+IN VLD+++ R E ++ Sbjct: 125 SHKYINGVLDRLASRLREAEKQ 146 >gi|257784275|ref|YP_003179492.1| NusB antitermination factor [Atopobium parvulum DSM 20469] gi|257472782|gb|ACV50901.1| NusB antitermination factor [Atopobium parvulum DSM 20469] Length = 167 Score = 133 bits (335), Expect = 9e-30, Method: Composition-based stats. Identities = 36/147 (24%), Positives = 67/147 (45%), Gaps = 14/147 (9%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 R AR A+Q L+Q + S E++ D L + E+ R++ G Sbjct: 8 RTRARSQALQLLFQAEATNRSVLEVL--------GGDYTLSEGPLD-----EYARLLAVG 54 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135 + +D +I++ ++ WS R+ + ++LR + E+++ V V V I+E V +A Sbjct: 55 ADGIRDDLDDIIAAY-SKDWSIDRMPSVDRNLLRISLYEILKVPEVDVAVAINEVVDLAR 113 Query: 136 DFFYGDEPKFINAVLDKVSRKEEIKRS 162 + D P+FIN VL ++ + Sbjct: 114 AYCGDDSPRFINGVLGRIVDDIDAGED 140 >gi|157825345|ref|YP_001493065.1| transcription antitermination protein NusB [Rickettsia akari str. Hartford] gi|166215710|sp|A8GMD2|NUSB_RICAH RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|157799303|gb|ABV74557.1| transcription antitermination protein NusB [Rickettsia akari str. Hartford] Length = 156 Score = 133 bits (335), Expect = 9e-30, Method: Composition-based stats. Identities = 42/147 (28%), Positives = 83/147 (56%), Gaps = 2/147 (1%) Query: 14 HRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLE--WFRV 71 +++ IAR+AAVQA+YQ + + I + + D+ + + L + L F++ Sbjct: 7 NKKSIARIAAVQAIYQNILQNNDDMDDIMQNVLSFYRNDSSITNLTGNLKISLSISHFKI 66 Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131 ++ V + +D +I + LT + + ++L ++LRAG+ EL+ + P +V+I+EY Sbjct: 67 LVKSVFENINKLDEIIDNHLTNDKDPAHMPILLRALLRAGIYELLFYPTTPAKVVINEYT 126 Query: 132 CIAHDFFYGDEPKFINAVLDKVSRKEE 158 IA+D G E F+N+VLD +++++ Sbjct: 127 DIANDMLNGYEIGFVNSVLDTIAKEKN 153 >gi|259503557|ref|ZP_05746459.1| N utilization substance protein B [Lactobacillus antri DSM 16041] gi|259168470|gb|EEW52965.1| N utilization substance protein B [Lactobacillus antri DSM 16041] Length = 136 Score = 133 bits (335), Expect = 9e-30, Method: Composition-based stats. Identities = 36/148 (24%), Positives = 60/148 (40%), Gaps = 12/148 (8%) Query: 12 LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71 +S R R A Q L+ + ++ + Y + + L ++ R Sbjct: 1 MSLTRHALREEAFQVLFALQTNPE--ADLATIYRSIPHHDERALP----------DYVRQ 48 Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131 + GV +R+ +D IS L W+ RL ILR + EL VP V I+E + Sbjct: 49 LATGVSERQADLDEQISGLLASDWTIDRLAKADLIILRLALYELQYVDEVPTAVAINEAL 108 Query: 132 CIAHDFFYGDEPKFINAVLDKVSRKEEI 159 +A +F KFIN L + ++ + Sbjct: 109 ELAKEFSSDQSRKFINGALGRFEKENNL 136 >gi|119390814|sp|Q68XK6|NUSB_RICTY RecName: Full=N utilization substance protein B homolog; Short=Protein nusB Length = 154 Score = 133 bits (335), Expect = 9e-30, Method: Composition-based stats. Identities = 40/146 (27%), Positives = 79/146 (54%), Gaps = 2/146 (1%) Query: 14 HRRGIARLAAVQALYQ-IDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVI 72 +++ IAR+AAVQALYQ I +I+ +L ++ + + + F+++ Sbjct: 7 NKKSIARIAAVQALYQNILQNNYDMYDIMQNILACYHSNSIDL-PKNFKISLSISHFKML 65 Query: 73 IHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVC 132 + V + +D +I + LT + ++L ++LR + EL+ C + P +V+I+EY Sbjct: 66 VKSVFENINKLDEIIDNHLTNDKDPVHMPILLRALLRVSICELLFCSTTPAKVVINEYTD 125 Query: 133 IAHDFFYGDEPKFINAVLDKVSRKEE 158 IA+D E F+N++LDK++++ Sbjct: 126 IANDLLNEHEIGFVNSILDKIAQENN 151 >gi|289675585|ref|ZP_06496475.1| transcription antitermination protein NusB [Pseudomonas syringae pv. syringae FF5] Length = 127 Score = 133 bits (335), Expect = 9e-30, Method: Composition-based stats. Identities = 43/135 (31%), Positives = 65/135 (48%), Gaps = 20/135 (14%) Query: 2 TIQDNKKDLK-------LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTE 54 T Q N +D K S +R AR A QALYQ + G S EI +++ Sbjct: 6 TDQFNPRDAKSPEAAKGKSAKRREARQMATQALYQWHMAGHSLNEIEAQFR--------- 56 Query: 55 LDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLE 114 V++ + +VD +F ++HGV K ID +S CL + LD + ++LR E Sbjct: 57 --VDNDFSNVDGTYFHELLHGVATNKTEIDTALSPCLD--LTIEELDPVELAVLRLSTFE 112 Query: 115 LIECHSVPVEVIISE 129 L++ VP V+I+E Sbjct: 113 LLKRIDVPYRVVINE 127 >gi|299768336|ref|YP_003730362.1| transcription antitermination protein NusB [Acinetobacter sp. DR1] gi|298698424|gb|ADI88989.1| transcription antitermination protein NusB [Acinetobacter sp. DR1] Length = 149 Score = 132 bits (334), Expect = 1e-29, Method: Composition-based stats. Identities = 36/133 (27%), Positives = 60/133 (45%), Gaps = 13/133 (9%) Query: 22 AAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQ 81 AVQ +Y+ + EI + E+ VDL ++ ++ V+ + Sbjct: 18 FAVQGIYEWQMSHNPVHEIEA-----------RTRAENAMHKVDLNYYHELLTQVIALRD 66 Query: 82 HIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGD 141 +D L+ L + S LD + + LR G EL + VP V++ E + +A F D Sbjct: 67 DLDALLIPVLDRE--LSALDGVELATLRLGAYELRDHLEVPYRVVLDEAIELAKHFGGAD 124 Query: 142 EPKFINAVLDKVS 154 K+IN VLD++S Sbjct: 125 SHKYINGVLDRLS 137 >gi|301345751|ref|ZP_07226492.1| transcription antitermination protein NusB [Acinetobacter baumannii AB056] gi|301512968|ref|ZP_07238205.1| transcription antitermination protein NusB [Acinetobacter baumannii AB058] gi|301596175|ref|ZP_07241183.1| transcription antitermination protein NusB [Acinetobacter baumannii AB059] Length = 135 Score = 132 bits (334), Expect = 1e-29, Method: Composition-based stats. Identities = 33/131 (25%), Positives = 58/131 (44%), Gaps = 13/131 (9%) Query: 22 AAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQ 81 AVQ +Y+ + EI + E+ VDL ++ ++ V+ + + Sbjct: 18 FAVQGIYEWQMSHNPVHEIEA-----------RTRAENAMHKVDLNYYHELLTQVIAQHE 66 Query: 82 HIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGD 141 +D L+ L + LD + + LR G EL + +P V++ E + +A F D Sbjct: 67 DLDALLIPVLDRE--IDALDGVELATLRLGAYELRDHLEIPYRVVLDEAIELAKHFGGAD 124 Query: 142 EPKFINAVLDK 152 K+IN VLD+ Sbjct: 125 SHKYINGVLDR 135 >gi|315222311|ref|ZP_07864217.1| transcription antitermination factor NusB [Streptococcus anginosus F0211] gi|315188644|gb|EFU22353.1| transcription antitermination factor NusB [Streptococcus anginosus F0211] Length = 141 Score = 132 bits (334), Expect = 1e-29, Method: Composition-based stats. Identities = 38/139 (27%), Positives = 58/139 (41%), Gaps = 8/139 (5%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 R R A QAL ++ E RF + D+ + + ++ G Sbjct: 9 RRELRERAFQALMSLEYEKDIV-------EACRFAYLYDKDMTNDSDVEIPAFLLNLVTG 61 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135 V K +D +S L E W+ RL +I +ILR G+ E+ E P V I+E + ++ Sbjct: 62 VEQSKNELDDKLSQYLKEGWTLERLTLIEKNILRLGLFEMTEF-DTPQLVAINEAIELSK 120 Query: 136 DFFYGDEPKFINAVLDKVS 154 F KFIN +L K Sbjct: 121 KFSDEKSSKFINGILSKFV 139 >gi|282853858|ref|ZP_06263195.1| transcription antitermination factor NusB [Propionibacterium acnes J139] gi|282583311|gb|EFB88691.1| transcription antitermination factor NusB [Propionibacterium acnes J139] gi|314923552|gb|EFS87383.1| transcription antitermination factor NusB [Propionibacterium acnes HL001PA1] gi|314966598|gb|EFT10697.1| transcription antitermination factor NusB [Propionibacterium acnes HL082PA2] gi|314981523|gb|EFT25617.1| transcription antitermination factor NusB [Propionibacterium acnes HL110PA3] gi|315092187|gb|EFT64163.1| transcription antitermination factor NusB [Propionibacterium acnes HL110PA4] gi|315092880|gb|EFT64856.1| transcription antitermination factor NusB [Propionibacterium acnes HL060PA1] gi|315103598|gb|EFT75574.1| transcription antitermination factor NusB [Propionibacterium acnes HL050PA2] gi|327327421|gb|EGE69197.1| n utilization substance protein B-like protein [Propionibacterium acnes HL103PA1] Length = 261 Score = 132 bits (334), Expect = 1e-29, Method: Composition-based stats. Identities = 31/138 (22%), Positives = 63/138 (45%), Gaps = 14/138 (10%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 R AR A+ L++ D+IG E+++ V+ + + ++ G Sbjct: 39 RSKARKQALDILFEADLIGTDPLEVLAAR-------------PGVFTNPVRPFAADLVRG 85 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135 V + +D +++ CL+E W+ +R+ + + R G E++ P +ISE + ++ Sbjct: 86 VTATQVGLDSVLTDCLSEGWTLARMPRVDRILARLGAFEILHT-DTPNPAVISEAIELSE 144 Query: 136 DFFYGDEPKFINAVLDKV 153 +F D F+N +L V Sbjct: 145 EFSTDDSAPFLNGLLGAV 162 >gi|163858272|ref|YP_001632570.1| transcription antitermination protein NusB [Bordetella petrii DSM 12804] gi|163262000|emb|CAP44302.1| N utilization substance protein B homolog [Bordetella petrii] Length = 138 Score = 132 bits (334), Expect = 1e-29, Method: Composition-based stats. Identities = 37/144 (25%), Positives = 63/144 (43%), Gaps = 12/144 (8%) Query: 24 VQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHI 83 +Q +Y + G T+ E + + AD + D +WF+ ++HGV+ + Sbjct: 1 MQGVYAWLLRGGEGTQDAGEIDAHLRDAD-------DFSEADAQWFKTLLHGVLQEAGGL 53 Query: 84 DLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEP 143 + + L + IL G EL+ VP +V I+E V +A F D Sbjct: 54 RERFTPYIDR--PLGELSPVEHGILLIGSYELVHHLEVPYKVAINEAVELAKSFGGTDGF 111 Query: 144 KFINAVLDKVS---RKEEIKRSGC 164 KF+N VLDK++ R E++ + Sbjct: 112 KFVNGVLDKLAADVRAAEVQAAAS 135 >gi|311064653|ref|YP_003971378.1| n utilization substance protein B NusB [Bifidobacterium bifidum PRL2010] gi|310866972|gb|ADP36341.1| NusB N utilization substance protein B [Bifidobacterium bifidum PRL2010] Length = 223 Score = 132 bits (334), Expect = 1e-29, Method: Composition-based stats. Identities = 36/147 (24%), Positives = 62/147 (42%), Gaps = 12/147 (8%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 R AR A+ LY+ D G +++E E ++ I+ G Sbjct: 3 RSTARKRALNTLYEADEKGQDFLSLLAERIE-----------EPGAQTPLPDYAIEIVRG 51 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135 V D ++ ID +++ + W R+ ++ +ILR E+I VP V I E + +A Sbjct: 52 VADHRREIDYMLNEH-STGWKVRRMAVVDRNILRIAAWEIIFNDDVPDRVAIDEALGLAK 110 Query: 136 DFFYGDEPKFINAVLDKVSRKEEIKRS 162 GD P FI+ +L + E + + Sbjct: 111 TLSDGDSPAFIHGLLSAICDDTEGREA 137 >gi|168485566|ref|ZP_02710074.1| transcription antitermination factor NusB [Streptococcus pneumoniae CDC1087-00] gi|183571084|gb|EDT91612.1| transcription antitermination factor NusB [Streptococcus pneumoniae CDC1087-00] Length = 140 Score = 132 bits (333), Expect = 1e-29, Method: Composition-based stats. Identities = 35/143 (24%), Positives = 63/143 (44%), Gaps = 11/143 (7%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 R R A QAL ++ G + RF + + V L + ++ G Sbjct: 9 RRQLRKCAFQALMSLEF-GTNVET------ACRFAYTHDREDTDVQLPA---FLIDLVSG 58 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135 + +K+ +D I+ L W+ RL ++ ++LR GV E+ P V ++E + +A Sbjct: 59 IQAKKEELDKQITQHLKVGWTIERLTLVERNLLRLGVFEITSF-DTPQLVAVNEAIELAK 117 Query: 136 DFFYGDEPKFINAVLDKVSRKEE 158 DF +FIN +L + +E+ Sbjct: 118 DFSDQKSARFINGLLSQFVTEEQ 140 >gi|312134817|ref|YP_004002155.1| nusb antitermination factor [Caldicellulosiruptor owensensis OL] gi|311774868|gb|ADQ04355.1| NusB antitermination factor [Caldicellulosiruptor owensensis OL] Length = 134 Score = 132 bits (333), Expect = 1e-29, Method: Composition-based stats. Identities = 42/141 (29%), Positives = 71/141 (50%), Gaps = 8/141 (5%) Query: 24 VQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHI 83 ++ LY S +II Y+ +R EL+ + + +D E+ ++ GV+ +Q I Sbjct: 1 MKILYAYRFEDGS-QDIIEFYKKFR-----ELNQDEDFRDIDEEYLEKLLKGVIQNQQRI 54 Query: 84 DLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEP 143 D LI ++ W SRL M+ ++R V EL+ VPV V I E V +++ F P Sbjct: 55 DSLIEKY-SKDWPLSRLPMVELELMRVAVYELLFEEDVPVSVAIDEAVDLSNIFGIEKAP 113 Query: 144 KFINAVLDKVSRKEEIKRSGC 164 F+N +L +++ E+KR Sbjct: 114 SFVNGILGRIA-ANEVKRGQK 133 >gi|157803349|ref|YP_001491898.1| transcription antitermination protein NusB [Rickettsia canadensis str. McKiel] gi|157784612|gb|ABV73113.1| transcription antitermination protein NusB [Rickettsia canadensis str. McKiel] Length = 178 Score = 132 bits (333), Expect = 1e-29, Method: Composition-based stats. Identities = 40/147 (27%), Positives = 83/147 (56%), Gaps = 2/147 (1%) Query: 14 HRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDV--ESVYLHVDLEWFRV 71 +++ IAR+AAVQA+YQ + E I + + + + E++ + + + F++ Sbjct: 29 NKKSIARIAAVQAMYQHILQDNQDMEYILQNVLSFYQNNNSITDLSENLKISLSISHFKM 88 Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131 ++ V + +D +I + LT + + ++L ++ R + EL+ CH+ P +V+I+EY Sbjct: 89 LVKSVFENFNKLDEMIDNHLTNDKDPAHMPILLRALFRVSICELLFCHTTPAKVVINEYT 148 Query: 132 CIAHDFFYGDEPKFINAVLDKVSRKEE 158 IA+D E F+N+VLDK++++ + Sbjct: 149 DIANDMLNEHEIGFVNSVLDKIAKENK 175 >gi|20141624|sp|Q9ZE01|NUSB_RICPR RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|292571756|gb|ADE29671.1| N utilization substance protein B [Rickettsia prowazekii Rp22] Length = 155 Score = 132 bits (333), Expect = 2e-29, Method: Composition-based stats. Identities = 39/146 (26%), Positives = 79/146 (54%), Gaps = 1/146 (0%) Query: 14 HRRGIARLAAVQALYQ-IDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVI 72 +++ IAR+AAVQALYQ I +I+ ++ ++ + + + F+++ Sbjct: 7 NKKSIARIAAVQALYQNILQNNYDMYDIMQNILACYHSNNSIDLPKNFKISLSISHFKML 66 Query: 73 IHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVC 132 + V + +D +I + LT + ++L ++LR + EL+ C + P +V+I+EY Sbjct: 67 VKSVFENINKLDEIIDNHLTNAKDSVHMPILLRALLRVSICELLFCSTTPAKVVINEYTD 126 Query: 133 IAHDFFYGDEPKFINAVLDKVSRKEE 158 IA+D E F+N++LDK++++ Sbjct: 127 IANDLLNEHEIGFVNSILDKIAQENN 152 >gi|226323208|ref|ZP_03798726.1| hypothetical protein COPCOM_00980 [Coprococcus comes ATCC 27758] gi|225208398|gb|EEG90752.1| hypothetical protein COPCOM_00980 [Coprococcus comes ATCC 27758] Length = 130 Score = 132 bits (333), Expect = 2e-29, Method: Composition-based stats. Identities = 37/140 (26%), Positives = 59/140 (42%), Gaps = 11/140 (7%) Query: 15 RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74 RR R + L+ I E I Y A E + R + Sbjct: 2 RRSKVREHIFKMLFSIGFDAADADEQIELYLEQVEEASEEERG----------YMRKKVK 51 Query: 75 GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134 + ++ ID +I+ T W R++ + S+LR V E+ VPV+V I+E V +A Sbjct: 52 DIAAHEEEIDAMINEH-TTGWKTGRMNKVDLSVLRLAVYEMKWDDEVPVKVAINEAVELA 110 Query: 135 HDFFYGDEPKFINAVLDKVS 154 +F + P F+N VL K++ Sbjct: 111 KNFSGDEGPAFVNGVLGKLA 130 >gi|81428290|ref|YP_395290.1| transcription antitermination protein NusB [Lactobacillus sakei subsp. sakei 23K] gi|119390779|sp|Q38XV0|NUSB_LACSS RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|78609932|emb|CAI54979.1| Ribosomal RNA transcription antitermination protein NusB [Lactobacillus sakei subsp. sakei 23K] Length = 142 Score = 132 bits (333), Expect = 2e-29, Method: Composition-based stats. Identities = 35/143 (24%), Positives = 58/143 (40%), Gaps = 4/143 (2%) Query: 12 LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71 + R R AA Q L+ + + E+ Y+ + D E V + Sbjct: 2 PNFNRHQIRQAAFQVLFT--LNANQSLELEDAYQAV--LTMDQFDAEEVTPVEVPAYLAF 57 Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131 ++ GV + + +D ++ L + W SRL ILR G+ E+ P +V ++E + Sbjct: 58 LVSGVTENQAALDAALTPYLKKGWQLSRLAKPDLIILRLGLFEMQNSTEAPAKVALNEAL 117 Query: 132 CIAHDFFYGDEPKFINAVLDKVS 154 +A F FIN VL K Sbjct: 118 ELAKQFTDDQAKGFINGVLSKFV 140 >gi|224283414|ref|ZP_03646736.1| NusB antitermination factor [Bifidobacterium bifidum NCIMB 41171] gi|313140569|ref|ZP_07802762.1| transcription termination factor [Bifidobacterium bifidum NCIMB 41171] gi|313133079|gb|EFR50696.1| transcription termination factor [Bifidobacterium bifidum NCIMB 41171] Length = 223 Score = 132 bits (333), Expect = 2e-29, Method: Composition-based stats. Identities = 36/147 (24%), Positives = 62/147 (42%), Gaps = 12/147 (8%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 R AR A+ LY+ D G +++E E ++ I+ G Sbjct: 3 RSTARKRALNTLYEADEKGQDFLSLLAERIE-----------EPGAQTPLPDYAIEIVRG 51 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135 V D ++ ID +++ + W R+ ++ +ILR E+I VP V I E + +A Sbjct: 52 VADHRREIDYMLNEH-STGWKVRRMAVVDRNILRIAAWEIIFNDDVPDRVAIDEALGLAK 110 Query: 136 DFFYGDEPKFINAVLDKVSRKEEIKRS 162 GD P FI+ +L + E + + Sbjct: 111 TLSDGDSPAFIHGLLSAICDDTEGREA 137 >gi|310287767|ref|YP_003939025.1| antitermination factor NusB [Bifidobacterium bifidum S17] gi|309251703|gb|ADO53451.1| antitermination factor NusB [Bifidobacterium bifidum S17] Length = 223 Score = 132 bits (333), Expect = 2e-29, Method: Composition-based stats. Identities = 36/147 (24%), Positives = 62/147 (42%), Gaps = 12/147 (8%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 R AR A+ LY+ D G +++E E ++ I+ G Sbjct: 3 RSTARKRALNTLYEADEKGQDFLSLLAERIE-----------EPGAQTPLPDYAIEIVRG 51 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135 V D ++ ID +++ + W R+ ++ +ILR E+I VP V I E + +A Sbjct: 52 VADHRREIDYMLNEH-STGWKVRRMAVVDRNILRIAAWEIIFNDDVPDRVAIDEALGLAK 110 Query: 136 DFFYGDEPKFINAVLDKVSRKEEIKRS 162 GD P FI+ +L + E + + Sbjct: 111 TLSDGDSPAFIHGLLSAICDDTEGREA 137 >gi|296875879|ref|ZP_06899940.1| transcription antitermination factor NusB [Streptococcus parasanguinis ATCC 15912] gi|296433120|gb|EFH18906.1| transcription antitermination factor NusB [Streptococcus parasanguinis ATCC 15912] Length = 143 Score = 132 bits (333), Expect = 2e-29, Method: Composition-based stats. Identities = 39/142 (27%), Positives = 61/142 (42%), Gaps = 8/142 (5%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 R R A QAL ++ G +II E RF + D+ + ++ G Sbjct: 10 RRELRERAFQALMALEYDG----DII---EACRFAYLHDKDIAEDKEVDLPAFLMNLVTG 62 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135 V K +D I L W+ RL ++ +ILR G+ E+ E P V ++E V +A Sbjct: 63 VYQSKDQLDQQIGQHLKAGWTVERLTLVEKNILRLGIYEITEF-DTPQIVAVNEAVELAK 121 Query: 136 DFFYGDEPKFINAVLDKVSRKE 157 F +F+N VL + +E Sbjct: 122 AFSDEISSRFVNGVLSQFVTEE 143 >gi|206890845|ref|YP_002249638.1| transcription antitermination factor NusB [Thermodesulfovibrio yellowstonii DSM 11347] gi|226738908|sp|B5YHQ2|NUSB_THEYD RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|206742783|gb|ACI21840.1| transcription antitermination factor NusB [Thermodesulfovibrio yellowstonii DSM 11347] Length = 151 Score = 132 bits (333), Expect = 2e-29, Method: Composition-based stats. Identities = 34/143 (23%), Positives = 65/143 (45%), Gaps = 2/143 (1%) Query: 15 RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74 +R AR +Q LY ++ + + E + E + + +I Sbjct: 2 KRRKAREYVLQFLYACEMNENTQKICNYNFLQEEIEKFWERNYEEQNSDI-KSFANQLIE 60 Query: 75 GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134 G ++ ID +I +KW+ R+ I +ILR + E++ +P +V I+E V IA Sbjct: 61 GTIEHIDIIDKIIQKY-ADKWNIERMITIDKNILRFSIYEILYRQDIPYQVTINEAVEIA 119 Query: 135 HDFFYGDEPKFINAVLDKVSRKE 157 + + FIN +LD+++++E Sbjct: 120 KKYSTKESAAFINGILDRIAKEE 142 >gi|300741572|ref|ZP_07071593.1| transcription antitermination factor NusB [Rothia dentocariosa M567] gi|311113665|ref|YP_003984887.1| transcription antitermination factor NusB [Rothia dentocariosa ATCC 17931] gi|300380757|gb|EFJ77319.1| transcription antitermination factor NusB [Rothia dentocariosa M567] gi|310945159|gb|ADP41453.1| transcription antitermination factor NusB [Rothia dentocariosa ATCC 17931] Length = 136 Score = 132 bits (333), Expect = 2e-29, Method: Composition-based stats. Identities = 37/140 (26%), Positives = 58/140 (41%), Gaps = 14/140 (10%) Query: 14 HRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVII 73 + R ARL AV+ L++ D +++ + + + I+ Sbjct: 2 NSRTKARLRAVEVLFEADQRQEDIIDVLKRRRLHTAAQIS-------------AYAEEIV 48 Query: 74 HGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCI 133 GV + I + + WSF R+ + ILR G EL+ VP V ISE + Sbjct: 49 RGVREHDDEIREYLETY-ARDWSFERMPAVDRVILRIGAWELLYNDDVPDAVAISEATGL 107 Query: 134 AHDFFYGDEPKFINAVLDKV 153 A D PKF+N +LDK+ Sbjct: 108 ARVLSTNDSPKFVNGLLDKL 127 >gi|319939911|ref|ZP_08014266.1| transcription antitermination protein NusB [Streptococcus anginosus 1_2_62CV] gi|319810922|gb|EFW07241.1| transcription antitermination protein NusB [Streptococcus anginosus 1_2_62CV] Length = 141 Score = 132 bits (332), Expect = 2e-29, Method: Composition-based stats. Identities = 38/139 (27%), Positives = 58/139 (41%), Gaps = 8/139 (5%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 R R A QAL ++ E RF + D+ + + ++ G Sbjct: 9 RRELRERAFQALMSLEYEKDIV-------EACRFAYLYDKDMTNDSDVELPAFLLNLVMG 61 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135 V K +D +S L E W+ RL +I +ILR G+ E+ E P V I+E + ++ Sbjct: 62 VEQSKNELDDKLSQYLKEGWTLERLTLIEKNILRLGLFEMTEF-DTPQLVAINEAIELSK 120 Query: 136 DFFYGDEPKFINAVLDKVS 154 F KFIN +L K Sbjct: 121 KFSDEKSSKFINGILSKFV 139 >gi|145588452|ref|YP_001155049.1| NusB antitermination factor [Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1] gi|145046858|gb|ABP33485.1| NusB antitermination factor [Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1] Length = 174 Score = 132 bits (332), Expect = 2e-29, Method: Composition-based stats. Identities = 41/155 (26%), Positives = 67/155 (43%), Gaps = 17/155 (10%) Query: 16 RGIARLAAVQALYQ---IDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVI 72 R AR A+Q +YQ + G +L + + L+ F+ I Sbjct: 33 RRRAREYALQGVYQSLVMRRAGSLPNAA---------AIAKQLGEDPAFRRCQLDLFQGI 83 Query: 73 IHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVC 132 GV++R ++ +I+ L + L + + L G EL SVP +V I+E V Sbjct: 84 FDGVLERTDELEAIITPALDR--PINELSPVEHAALLIGAYELAIDLSVPYKVAINEAVE 141 Query: 133 IAHDFFYGDEPKFINAVLDKVSRKEEIKRSGCVSA 167 +A F D K++N VLD +++K RS + A Sbjct: 142 LAKTFGGTDGHKYVNGVLDLLAQKL---RSAEIQA 173 >gi|85373345|ref|YP_457407.1| transcription termination factor [Erythrobacter litoralis HTCC2594] gi|84786428|gb|ABC62610.1| transcription termination factor [Erythrobacter litoralis HTCC2594] Length = 125 Score = 132 bits (332), Expect = 2e-29, Method: Composition-based stats. Identities = 42/125 (33%), Positives = 65/125 (52%), Gaps = 2/125 (1%) Query: 32 IIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCL 91 + ++ E+ +R + E Y ++++F I+ GV R ID L+++ L Sbjct: 1 MEKTPLARLLDEFHQHRLGREIE--DGEHYADAEVDFFDDIVSGVDARSDEIDELVTAKL 58 Query: 92 TEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLD 151 W+ +RLD + ILRAG ELI VP ISEYV +A FF E KF+N +LD Sbjct: 59 AAGWTLARLDKTMVQILRAGTYELIARADVPKAAAISEYVDVAKAFFDDREAKFVNGLLD 118 Query: 152 KVSRK 156 V+++ Sbjct: 119 AVAKQ 123 >gi|117928511|ref|YP_873062.1| NusB antitermination factor [Acidothermus cellulolyticus 11B] gi|166215656|sp|A0LUG6|NUSB_ACIC1 RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|117648974|gb|ABK53076.1| NusB antitermination factor [Acidothermus cellulolyticus 11B] Length = 145 Score = 132 bits (332), Expect = 2e-29, Method: Composition-based stats. Identities = 33/138 (23%), Positives = 58/138 (42%), Gaps = 14/138 (10%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 R AR A+ L++ D+ EI++++ E + ++ G Sbjct: 4 RTKARKRALDVLFEADLRAADPLEILADHTARADTPVPE-------------YAVRLVEG 50 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135 V + ID +I W+ R+ + +ILR + EL+ VP V+++E V +A Sbjct: 51 VAAHRAEIDRIIEQFAV-GWTLQRMPTVDRNILRLAIYELLWVTEVPDAVVLAEAVKLAQ 109 Query: 136 DFFYGDEPKFINAVLDKV 153 D + F+N VL V Sbjct: 110 DLSTAESAPFVNGVLAAV 127 >gi|159897280|ref|YP_001543527.1| NusB antitermination factor [Herpetosiphon aurantiacus ATCC 23779] gi|254772643|sp|A9AXI5|NUSB_HERA2 RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|159890319|gb|ABX03399.1| NusB antitermination factor [Herpetosiphon aurantiacus ATCC 23779] Length = 146 Score = 132 bits (332), Expect = 2e-29, Method: Composition-based stats. Identities = 34/149 (22%), Positives = 68/149 (45%), Gaps = 15/149 (10%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 R R AA+QAL+++D +++ + + ++ ++F I++G Sbjct: 10 RHRVRAAALQALFELDQTTHDLDSVVA-----------RISDDEMFSAEGRDFFARIVNG 58 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIE---CHSVPVEVIISEYVC 132 +Q ID LI+ + W ++ + ++LR + E++ PV+ +I+E V Sbjct: 59 AWVNRQEIDDLIAK-IAPSWPVHQMPGVDIAVLRIALFEILYDAAADKAPVKAVINEAVE 117 Query: 133 IAHDFFYGDEPKFINAVLDKVSRKEEIKR 161 +A F + +F+N VL V K E + Sbjct: 118 LAKHFGSDNSGRFVNGVLSTVVNKPESEE 146 >gi|325963392|ref|YP_004241298.1| transcription antitermination factor NusB [Arthrobacter phenanthrenivorans Sphe3] gi|323469479|gb|ADX73164.1| transcription antitermination factor NusB [Arthrobacter phenanthrenivorans Sphe3] Length = 136 Score = 132 bits (332), Expect = 2e-29, Method: Composition-based stats. Identities = 34/138 (24%), Positives = 60/138 (43%), Gaps = 14/138 (10%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 RG AR A+ L++ + S +++ + + II G Sbjct: 4 RGKARNRALDILFEAEQRSVSAFDVLRARR-------------EKTDQIINPYTLEIIEG 50 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135 V+ ++ ID + + ++ WS R+ + ILR G EL+ VP V +SE V +A Sbjct: 51 VVSQQTAIDEFLETY-SQGWSLERMPSVDRIILRIGTWELLYNDDVPDGVAVSEAVALAK 109 Query: 136 DFFYGDEPKFINAVLDKV 153 + P+FIN +L ++ Sbjct: 110 TLSTDESPQFINGLLGRL 127 >gi|149200420|ref|ZP_01877436.1| NusB antitermination factor [Lentisphaera araneosa HTCC2155] gi|149136489|gb|EDM24926.1| NusB antitermination factor [Lentisphaera araneosa HTCC2155] Length = 156 Score = 132 bits (332), Expect = 2e-29, Method: Composition-based stats. Identities = 42/151 (27%), Positives = 68/151 (45%), Gaps = 4/151 (2%) Query: 12 LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVY-LHVDLEWFR 70 + R + R A+Q LYQ DI E E+ + + + + + R Sbjct: 6 KRNPRSLGRKWALQYLYQSDIAKLEFQE--EEFALFIDQIENAPSAPNEHESSKGFAFAR 63 Query: 71 VIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEY 130 II GV+D+ + ID I+ + W R+ ++LR V EL+E S VI++E Sbjct: 64 EIIQGVLDKVKEIDAYITEE-AKNWKIDRMATTDRNVLRIAVFELMEIKSNHPVVIVNEA 122 Query: 131 VCIAHDFFYGDEPKFINAVLDKVSRKEEIKR 161 V +A F D KF+N + D ++RK + Sbjct: 123 VELAKTFGNTDSFKFVNGIGDTLARKLRPEE 153 >gi|153953852|ref|YP_001394617.1| transcription antitermination protein NusB [Clostridium kluyveri DSM 555] gi|219854467|ref|YP_002471589.1| hypothetical protein CKR_1124 [Clostridium kluyveri NBRC 12016] gi|189035884|sp|A5N7I8|NUSB_CLOK5 RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|254772627|sp|B9E100|NUSB_CLOK1 RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|146346733|gb|EDK33269.1| NusB [Clostridium kluyveri DSM 555] gi|219568191|dbj|BAH06175.1| hypothetical protein [Clostridium kluyveri NBRC 12016] Length = 156 Score = 131 bits (331), Expect = 2e-29, Method: Composition-based stats. Identities = 31/156 (19%), Positives = 65/156 (41%), Gaps = 10/156 (6%) Query: 15 RRGIARLAAVQALYQIDIIGCSTTEIISEYETY---------RFCADTELDVESVYLHVD 65 R R ++ L+Q+ I IIS + + + ++D Sbjct: 2 NRKKTRELTMKLLFQMAINKEKADVIISNLKENIEMEQGSQKNSISQIYGENMGDLKNID 61 Query: 66 LEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEV 125 +++ ++ G+ + +++ I L W +RL + +IL+ E + +P +V Sbjct: 62 IDYVVRVLRGIEKNEDMLNIEIEKYL-RNWKLNRLSKVDSAILKICTYEFLHEDDIPEKV 120 Query: 126 IISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKR 161 I+E + +A + FIN VL + + E+IK+ Sbjct: 121 SINEAIELAKKYSSEKSASFINGVLGNMIKDEKIKK 156 >gi|312868252|ref|ZP_07728452.1| transcription antitermination factor NusB [Streptococcus parasanguinis F0405] gi|311095997|gb|EFQ54241.1| transcription antitermination factor NusB [Streptococcus parasanguinis F0405] Length = 143 Score = 131 bits (331), Expect = 3e-29, Method: Composition-based stats. Identities = 36/142 (25%), Positives = 58/142 (40%), Gaps = 8/142 (5%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 R R A Q+L ++ G E RF + D+ + ++ G Sbjct: 10 RRDLRERAFQSLMALEYDGDIV-------EACRFAYLHDKDLAEDKEVDLPAFLMNLVTG 62 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135 V K +D I L W+ RL ++ +ILR G+ E+ E P V ++E V +A Sbjct: 63 VYQSKDQLDQQIGQHLKTGWTVERLTLVEKNILRLGIYEITEF-DTPQIVAVNEAVELAK 121 Query: 136 DFFYGDEPKFINAVLDKVSRKE 157 F +F+N VL + +E Sbjct: 122 AFSDETSSRFVNGVLSQFVTEE 143 >gi|308276510|gb|ADO26409.1| N utilization substance protein B (Protein nusB) [Corynebacterium pseudotuberculosis I19] Length = 210 Score = 131 bits (331), Expect = 3e-29, Method: Composition-based stats. Identities = 37/155 (23%), Positives = 66/155 (42%), Gaps = 7/155 (4%) Query: 8 KDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLE 67 + K R AR A + LY+ ++ II + + D + + Sbjct: 23 RGRKRHGSRYKARRRAAEVLYEAEVRDVDPVAIIEDRIALSYHQDLGVAPVA-------A 75 Query: 68 WFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVII 127 + + I+ G ID LI++ L E W R+ + ++LR V ELI VPV + Sbjct: 76 YTKEIVAGTAQELDRIDGLIAANLAENWELERISAVDRAVLRVAVWELIFNEDVPVATAV 135 Query: 128 SEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRS 162 + V + + P ++NA+LD +++ E R+ Sbjct: 136 VDGVELVSQYSTDVAPAYVNALLDSIAQNIESHRA 170 >gi|322387215|ref|ZP_08060825.1| N utilization substance protein B [Streptococcus infantis ATCC 700779] gi|321141744|gb|EFX37239.1| N utilization substance protein B [Streptococcus infantis ATCC 700779] Length = 140 Score = 131 bits (331), Expect = 3e-29, Method: Composition-based stats. Identities = 34/143 (23%), Positives = 60/143 (41%), Gaps = 11/143 (7%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 R R A QAL ++ I + + D E D + + ++ G Sbjct: 9 RRELRKCAFQALMSLEYGSD-----IETACRFAYTHDREDDEVKL-----PSFLIDLVSG 58 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135 V +K+ +D I+ L W+ RL ++ ++LR GV E+ P V ++E + +A Sbjct: 59 VQAQKEELDKQITQHLKSGWTIERLTLVEKNLLRLGVFEITSF-DTPQLVAVNEAIELAK 117 Query: 136 DFFYGDEPKFINAVLDKVSRKEE 158 F +FIN +L + +E Sbjct: 118 SFSDQKSARFINGLLSQFVTEEN 140 >gi|32473208|ref|NP_866202.1| transcription antitermination protein NusB [Rhodopirellula baltica SH 1] gi|39931772|sp|Q7USA9|NUSB_RHOBA RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|32397887|emb|CAD73888.1| probable N utilization substance protein B homolog [Rhodopirellula baltica SH 1] gi|327540459|gb|EGF27044.1| transcription antitermination protein NusB [Rhodopirellula baltica WH47] Length = 145 Score = 131 bits (331), Expect = 3e-29, Method: Composition-based stats. Identities = 36/145 (24%), Positives = 67/145 (46%), Gaps = 13/145 (8%) Query: 11 KLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFR 70 ++S RR AR +Q LY+ D+ ++ R V ++ Sbjct: 4 RMSTRRR-AREIVLQLLYEADLNDWRDAATSRKFIRSRLQG----------RKVLTDFAA 52 Query: 71 VIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEY 130 ++ G M R+ ID ++ L+ W+ R+ + ++LR G E++ P +V ISE Sbjct: 53 ELLDGTMARRDDIDAKLTK-LSTNWALHRMPVTDRNVLRLGAYEILYSG-TPGQVAISEA 110 Query: 131 VCIAHDFFYGDEPKFINAVLDKVSR 155 + +A + + P+FIN VLD++ + Sbjct: 111 LTLAKRYGGENSPRFINGVLDRLFK 135 >gi|311742352|ref|ZP_07716161.1| transcription antitermination factor NusB [Aeromicrobium marinum DSM 15272] gi|311313980|gb|EFQ83888.1| transcription antitermination factor NusB [Aeromicrobium marinum DSM 15272] Length = 136 Score = 131 bits (331), Expect = 3e-29, Method: Composition-based stats. Identities = 31/139 (22%), Positives = 56/139 (40%), Gaps = 14/139 (10%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 R R A+ L++ ++ G ++E + ++ G Sbjct: 4 RTKYRKRALDVLFESELQGLEAGGSLTERLVTNEPPIN-------------PYTVTLVEG 50 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135 V + ID +IS W+ R+ + ++LR G+ E++ VP V +SE V +A Sbjct: 51 VAGTRDRIDAIISEH-AHGWTLDRMPAVDRNLLRLGIYEILYVDDVPDAVAVSEAVSLAQ 109 Query: 136 DFFYGDEPKFINAVLDKVS 154 + + F+N VL KV Sbjct: 110 ELSTDESASFVNGVLSKVV 128 >gi|254458717|ref|ZP_05072141.1| transcription antitermination factor NusB [Campylobacterales bacterium GD 1] gi|207084483|gb|EDZ61771.1| transcription antitermination factor NusB [Campylobacterales bacterium GD 1] Length = 134 Score = 131 bits (331), Expect = 3e-29, Method: Composition-based stats. Identities = 41/142 (28%), Positives = 60/142 (42%), Gaps = 13/142 (9%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 R AR+A V LY D+ S + E + + + D + + G Sbjct: 4 RHHARMAVVSLLYAYDLGNGSIADHTDEILEEKKIRNKQKD-----------FALALFEG 52 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135 VM+ + D I L E W F RL I + LR E++ + V+I+E V I Sbjct: 53 VMENLEACDKAIIEHLKE-WDFERLGAIERATLRLATYEILFG-ELDSAVVINEAVEITK 110 Query: 136 DFFYGDEPKFINAVLDKVSRKE 157 F PKFIN VLD +S+ + Sbjct: 111 AFGTEQSPKFINGVLDAISKDK 132 >gi|114566114|ref|YP_753268.1| hypothetical protein Swol_0564 [Syntrophomonas wolfei subsp. wolfei str. Goettingen] gi|119390841|sp|Q0AZF7|NUSB_SYNWW RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|114337049|gb|ABI67897.1| NusB antitermination factor [Syntrophomonas wolfei subsp. wolfei str. Goettingen] Length = 134 Score = 131 bits (331), Expect = 3e-29, Method: Composition-based stats. Identities = 29/143 (20%), Positives = 61/143 (42%), Gaps = 12/143 (8%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 R AR A + ++Q+D + + + A+ + +I G Sbjct: 3 RRKARETAFKVVFQVDQVQADAKKAFDYLVLHDKLAEKNQG-----------FSWDLIQG 51 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135 ++++ ID +I+S + +W+ R+ + +I+R E++ V I E + IA Sbjct: 52 TLEKQAEIDQMIASY-SREWALDRMSSVDRNIMRVAAYEILYLEDSQAVVAIDEAIEIAK 110 Query: 136 DFFYGDEPKFINAVLDKVSRKEE 158 + F+NA+LDK+ ++ Sbjct: 111 KYGDEGSGSFVNAILDKILGEKN 133 >gi|87308019|ref|ZP_01090161.1| probable N utilization substance protein B-like [Blastopirellula marina DSM 3645] gi|87289101|gb|EAQ80993.1| probable N utilization substance protein B-like [Blastopirellula marina DSM 3645] Length = 137 Score = 131 bits (330), Expect = 3e-29, Method: Composition-based stats. Identities = 35/145 (24%), Positives = 66/145 (45%), Gaps = 12/145 (8%) Query: 14 HRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVII 73 +R R +Q LYQ D+ + + + R +L + + R ++ Sbjct: 2 SKRSRVREVVLQILYQEDLNPEADIGVSERFLRGRLKHTEDL----------VAFGRSLL 51 Query: 74 HGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCI 133 GV ++ ID I + E WS +R+ + ++LR G E++ P V I+E V + Sbjct: 52 VGVRLHRKAIDAKIEAF-AENWSLARMAVTDRNVLRIGAFEILFS-ETPDRVAINEAVEL 109 Query: 134 AHDFFYGDEPKFINAVLDKVSRKEE 158 + F P+F+N +LD+V + ++ Sbjct: 110 SKRFGSKHSPQFVNGLLDRVLKSKQ 134 >gi|229817326|ref|ZP_04447608.1| hypothetical protein BIFANG_02588 [Bifidobacterium angulatum DSM 20098] gi|229785115|gb|EEP21229.1| hypothetical protein BIFANG_02588 [Bifidobacterium angulatum DSM 20098] Length = 137 Score = 131 bits (330), Expect = 3e-29, Method: Composition-based stats. Identities = 36/143 (25%), Positives = 58/143 (40%), Gaps = 12/143 (8%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 R AR A+ LY+ D G ++ E E+ I+ G Sbjct: 3 RSTARKRALNTLYEADEKGQDILSLLEERIAVPGAQTPLP-----------EYAIEIVRG 51 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135 V + ++ ID + C + W SR+ ++ +ILR E++ VP V I E + +A Sbjct: 52 VAEHRRDIDEKLDEC-STGWKISRMGVVDRNILRIAAWEIMYNDEVPDRVAIDEALGLAK 110 Query: 136 DFFYGDEPKFINAVLDKVSRKEE 158 G+ P FI+ +L V E Sbjct: 111 TLCDGESPAFIHGLLSAVCTAHE 133 >gi|219847234|ref|YP_002461667.1| NusB antitermination factor [Chloroflexus aggregans DSM 9485] gi|254772623|sp|B8G2S7|NUSB_CHLAD RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|219541493|gb|ACL23231.1| NusB antitermination factor [Chloroflexus aggregans DSM 9485] Length = 150 Score = 131 bits (330), Expect = 3e-29, Method: Composition-based stats. Identities = 32/156 (20%), Positives = 73/156 (46%), Gaps = 14/156 (8%) Query: 10 LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF 69 ++L+ +R R+AA+Q L+++D + +++ T + E+ Sbjct: 4 VRLASQRHRVRIAALQILFEVDETDHAIDQVLERRLT-----------DEPMSAESAEFL 52 Query: 70 RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELI--ECHSVPVEVII 127 R ++ G + + ++D +I W +++ + ++LR + EL+ E P++ +I Sbjct: 53 RRLVFGTWEHRSYLDRIIEEA-APNWPVNQMPGVDKAVLRIALFELLIDEVEKTPIKAVI 111 Query: 128 SEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRSG 163 +E V +A +F + +F+N VL V + +R Sbjct: 112 NEAVELAKEFGSDNSSRFVNGVLGTVVTRYLAEREA 147 >gi|300934532|ref|ZP_07149788.1| transcription antitermination protein NusB [Corynebacterium resistens DSM 45100] Length = 204 Score = 131 bits (330), Expect = 3e-29, Method: Composition-based stats. Identities = 36/153 (23%), Positives = 65/153 (42%), Gaps = 7/153 (4%) Query: 3 IQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYL 62 + ++ + + R AR AV +++ + +I+ E + + Sbjct: 1 MSEDIINYRRHGSRFKARRRAVDIIFEAEFRDLDPVKIVEERVELA-------KDPANAV 53 Query: 63 HVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVP 122 E+ I+ G ID IS L +W RL + ++LR EL+ VP Sbjct: 54 KPVPEYTATIVEGTATNLDAIDDAISMNLASEWRLDRLPAVDRAVLRVAAWELLFNDEVP 113 Query: 123 VEVIISEYVCIAHDFFYGDEPKFINAVLDKVSR 155 +V ++E + +A + + P ++NAVLD VSR Sbjct: 114 NQVAMTEGIELAAQYSHDKAPAYVNAVLDGVSR 146 >gi|300858556|ref|YP_003783539.1| N utilization substance protein B-like protein [Corynebacterium pseudotuberculosis FRC41] gi|300686010|gb|ADK28932.1| N utilization substance protein B-like protein [Corynebacterium pseudotuberculosis FRC41] gi|302206268|gb|ADL10610.1| N utilization substance protein B (Protein nusB) [Corynebacterium pseudotuberculosis C231] gi|302330826|gb|ADL21020.1| N utilization substance protein B (Protein nusB) [Corynebacterium pseudotuberculosis 1002] Length = 208 Score = 131 bits (330), Expect = 3e-29, Method: Composition-based stats. Identities = 37/155 (23%), Positives = 66/155 (42%), Gaps = 7/155 (4%) Query: 8 KDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLE 67 + K R AR A + LY+ ++ II + + D + + Sbjct: 21 RGRKRHGSRYKARRRAAEVLYEAEVRDVDPVAIIEDRIALSYHQDLGVAPVA-------A 73 Query: 68 WFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVII 127 + + I+ G ID LI++ L E W R+ + ++LR V ELI VPV + Sbjct: 74 YTKEIVAGTAQELDRIDGLIAANLAENWELERISAVDRAVLRVAVWELIFNEDVPVATAV 133 Query: 128 SEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRS 162 + V + + P ++NA+LD +++ E R+ Sbjct: 134 VDGVELVSQYSTDVAPAYVNALLDSIAQNIESHRA 168 >gi|225166064|ref|ZP_03727805.1| NusB antitermination factor [Opitutaceae bacterium TAV2] gi|224799698|gb|EEG18186.1| NusB antitermination factor [Opitutaceae bacterium TAV2] Length = 154 Score = 131 bits (330), Expect = 3e-29, Method: Composition-based stats. Identities = 38/155 (24%), Positives = 73/155 (47%), Gaps = 15/155 (9%) Query: 14 HRRGIARLAAVQALYQIDII-GCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVI 72 +R +R+AA+Q L+ + + +E + + +T+ Y + D + Sbjct: 7 AQRRDSRVAAMQYLFAWSMNAPQNLSEDLRAF------YETQEHPREHYAYAD-----EV 55 Query: 73 IHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVC 132 + GV+ ID I + L + W F R+ I +ILR + E+I VP V I+E + Sbjct: 56 VDGVIRNLVEIDARIRT-LAQNWEFDRIARIDLTILRVAIYEMIFRKDVPPVVSINEAIN 114 Query: 133 IAHDFFYGDEPKFINAVLDKVSRKEEIKRSGCVSA 167 ++ + D +FIN +LD++ K+++ R + Sbjct: 115 LSKTYSNSDAKRFINGILDRL--KDQLGRDARKAG 147 >gi|182417973|ref|ZP_02949281.1| transcription antitermination factor NusB [Clostridium butyricum 5521] gi|237668086|ref|ZP_04528070.1| transcription antitermination factor NusB [Clostridium butyricum E4 str. BoNT E BL5262] gi|182378144|gb|EDT75679.1| transcription antitermination factor NusB [Clostridium butyricum 5521] gi|237656434|gb|EEP53990.1| transcription antitermination factor NusB [Clostridium butyricum E4 str. BoNT E BL5262] Length = 131 Score = 131 bits (330), Expect = 4e-29, Method: Composition-based stats. Identities = 33/139 (23%), Positives = 61/139 (43%), Gaps = 10/139 (7%) Query: 15 RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74 R ++R A++ + + + E + + + E +DL + + + Sbjct: 2 NRKLSREKAMELFFGMTCSKDTVEEAVETFID---------NYEGDIKELDLTYIKKALI 52 Query: 75 GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134 G+ + K+ ID ISS L + W R+ + +ILR E++ VP V I+E + I Sbjct: 53 GIENNKEAIDEAISSNL-QNWKIDRISKVNLTILRLAAYEILFDEEVPRSVAINEALEIT 111 Query: 135 HDFFYGDEPKFINAVLDKV 153 + F+N VLDK+ Sbjct: 112 RKYSDEKSVSFVNGVLDKI 130 >gi|322377045|ref|ZP_08051537.1| transcription antitermination factor NusB [Streptococcus sp. M334] gi|321281758|gb|EFX58766.1| transcription antitermination factor NusB [Streptococcus sp. M334] Length = 139 Score = 131 bits (330), Expect = 4e-29, Method: Composition-based stats. Identities = 33/142 (23%), Positives = 60/142 (42%), Gaps = 11/142 (7%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 R R A QAL ++ G RF + + V + + ++ G Sbjct: 9 RRELRKCAFQALMSLEF-GTDVET------ACRFAYTHDREDADVQIPA---FLLNLVSG 58 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135 V +K +D I+ L W+ RL ++ ++LR G+ E+ P V ++E + +A Sbjct: 59 VQAQKDELDKQINQHLKSGWTVERLTLVEKNLLRLGIFEITSF-DTPQLVAVNEAIELAK 117 Query: 136 DFFYGDEPKFINAVLDKVSRKE 157 +F +FIN +L + +E Sbjct: 118 NFSDQKSARFINGLLSQFVTEE 139 >gi|154487009|ref|ZP_02028416.1| hypothetical protein BIFADO_00847 [Bifidobacterium adolescentis L2-32] gi|154084872|gb|EDN83917.1| hypothetical protein BIFADO_00847 [Bifidobacterium adolescentis L2-32] Length = 147 Score = 131 bits (330), Expect = 4e-29, Method: Composition-based stats. Identities = 35/144 (24%), Positives = 56/144 (38%), Gaps = 12/144 (8%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 R AR A+ LY+ D G +++E D + I+ G Sbjct: 3 RSTARKRALNTLYEADEKGQDILSLLAERIEQPGAQTPLPD-----------YAIEIVRG 51 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135 V + ID ++ + W R+ ++ +ILR E++ VP V I E + +A Sbjct: 52 VAEHIAAIDAMLDEH-STGWKVKRMGVVDRNILRIAAWEIMFNDDVPNMVAIDEALSLAK 110 Query: 136 DFFYGDEPKFINAVLDKVSRKEEI 159 D P FI+ +L VS E Sbjct: 111 TLCDDDSPAFIHGLLSAVSADAEA 134 >gi|153814701|ref|ZP_01967369.1| hypothetical protein RUMTOR_00916 [Ruminococcus torques ATCC 27756] gi|317500231|ref|ZP_07958461.1| transcription antitermination factor NusB [Lachnospiraceae bacterium 8_1_57FAA] gi|331087539|ref|ZP_08336471.1| transcription antitermination factor NusB [Lachnospiraceae bacterium 3_1_46FAA] gi|145847732|gb|EDK24650.1| hypothetical protein RUMTOR_00916 [Ruminococcus torques ATCC 27756] gi|316898357|gb|EFV20398.1| transcription antitermination factor NusB [Lachnospiraceae bacterium 8_1_57FAA] gi|330401757|gb|EGG81335.1| transcription antitermination factor NusB [Lachnospiraceae bacterium 3_1_46FAA] Length = 135 Score = 131 bits (330), Expect = 4e-29, Method: Composition-based stats. Identities = 34/142 (23%), Positives = 63/142 (44%), Gaps = 10/142 (7%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 R R + L+QI+ + E + +T D + D ++ + Sbjct: 3 RTELREHIFKMLFQIEFNDS-----VDMPENLNYYFETLEDAK----EKDKQYIQNKYEA 53 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135 ++ + ID L++ T W +R++ + SILR + E+ VP +V I+E V +A Sbjct: 54 ILSHIEEIDGLLNENAT-GWKTTRMNKVDLSILRLALYEIKWDEDVPAKVAINEAVELAK 112 Query: 136 DFFYGDEPKFINAVLDKVSRKE 157 F + F+N VL K +++E Sbjct: 113 RFGGDNSSSFVNGVLAKFAKQE 134 >gi|310829051|ref|YP_003961408.1| antitermination protein NusB [Eubacterium limosum KIST612] gi|308740785|gb|ADO38445.1| antitermination protein NusB [Eubacterium limosum KIST612] Length = 152 Score = 130 bits (329), Expect = 4e-29, Method: Composition-based stats. Identities = 40/145 (27%), Positives = 69/145 (47%), Gaps = 3/145 (2%) Query: 10 LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF 69 + R R A++ ++QID + F + D E + + Sbjct: 1 MSRKMNRKEERELALRGIFQIDFHAEDAE--LDTSLKNFFELAGQGDPEDEVSGMTGGYA 58 Query: 70 RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISE 129 + +I+ ++ + ID LI+S L E W FSR+ + +ILR GV EL+ VP EV I+E Sbjct: 59 KKVINAALENQGAIDALIASHLKETWDFSRVPKMEKAILRLGVTELLYTK-VPKEVAINE 117 Query: 130 YVCIAHDFFYGDEPKFINAVLDKVS 154 V +A + + +IN +L++V+ Sbjct: 118 AVELAKKYASEESKTYINGILNRVA 142 >gi|317481639|ref|ZP_07940674.1| transcription antitermination factor NusB [Bifidobacterium sp. 12_1_47BFAA] gi|322689608|ref|YP_004209342.1| transcription antitermination factor NusB [Bifidobacterium longum subsp. infantis 157F] gi|316916929|gb|EFV38316.1| transcription antitermination factor NusB [Bifidobacterium sp. 12_1_47BFAA] gi|320460944|dbj|BAJ71564.1| transcription antitermination factor NusB [Bifidobacterium longum subsp. infantis 157F] Length = 190 Score = 130 bits (329), Expect = 5e-29, Method: Composition-based stats. Identities = 32/138 (23%), Positives = 56/138 (40%), Gaps = 12/138 (8%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 R AR A+ LY+ D ++ E + D + I+ G Sbjct: 3 RSTARKRALNTLYEADEKSQDILSLLDERIAHPGAQTPLPD-----------YAIEIVKG 51 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135 V + ++ ID+ + + W R+ ++ +ILR E++ VP +V I E + +A Sbjct: 52 VAEHRRQIDMTLDEH-STGWKVRRMGVVDRNILRIAAWEILFNDDVPDKVAIDEALALAK 110 Query: 136 DFFYGDEPKFINAVLDKV 153 D P FI+ +L V Sbjct: 111 TLCDDDSPAFIHGLLSAV 128 >gi|307706079|ref|ZP_07642898.1| transcription antitermination factor NusB [Streptococcus mitis SK321] gi|307618479|gb|EFN97627.1| transcription antitermination factor NusB [Streptococcus mitis SK321] Length = 139 Score = 130 bits (329), Expect = 5e-29, Method: Composition-based stats. Identities = 31/142 (21%), Positives = 60/142 (42%), Gaps = 11/142 (7%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 R R A QAL ++ + E + D ++ + + ++ G Sbjct: 9 RRELRKCAFQALMSLEFG--TDMETACHFAYTHDREDADVQIP--------AFLLNLVSG 58 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135 V +K +D I+ L W+ RL ++ ++LR G+ E+ P V ++E + +A Sbjct: 59 VQAQKDELDKQINQHLKSGWTVERLTLVEKNLLRLGIFEITSF-DTPQLVAVNEAIELAK 117 Query: 136 DFFYGDEPKFINAVLDKVSRKE 157 +F +FIN +L + +E Sbjct: 118 NFSDQKSARFINGLLSQFVTEE 139 >gi|305681487|ref|ZP_07404294.1| transcription antitermination factor NusB [Corynebacterium matruchotii ATCC 14266] gi|305659692|gb|EFM49192.1| transcription antitermination factor NusB [Corynebacterium matruchotii ATCC 14266] Length = 312 Score = 130 bits (329), Expect = 5e-29, Method: Composition-based stats. Identities = 38/135 (28%), Positives = 59/135 (43%), Gaps = 7/135 (5%) Query: 24 VQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHI 83 V LY+ + I+ + V+ + + II GV + I Sbjct: 34 VDVLYEAEARDVDPVAIVEDRINLA-------RVDITLVAPIAAYTSEIIAGVAEELNRI 86 Query: 84 DLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEP 143 D +I+ L E W SR+ + +ILR V E+I VPV+ +SE V +A + P Sbjct: 87 DDVIAEYLAENWELSRISAVDRAILRVAVWEMIFNPDVPVKTALSEAVELASQYSGASAP 146 Query: 144 KFINAVLDKVSRKEE 158 +INAVLD V + + Sbjct: 147 AYINAVLDSVVKNID 161 >gi|307708254|ref|ZP_07644721.1| transcription antitermination factor NusB [Streptococcus mitis NCTC 12261] gi|307615700|gb|EFN94906.1| transcription antitermination factor NusB [Streptococcus mitis NCTC 12261] Length = 141 Score = 130 bits (329), Expect = 5e-29, Method: Composition-based stats. Identities = 31/143 (21%), Positives = 60/143 (41%), Gaps = 11/143 (7%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 R R A QAL ++ + E + D ++ + + ++ G Sbjct: 9 RRELRKCAFQALMSLEFG--TDMETACHFAYTHDREDEDVQIP--------AFLLNLVSG 58 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135 V +K +D I+ L W+ RL ++ ++LR G+ E+ P V ++E + +A Sbjct: 59 VQAQKDELDKQINQHLKSGWTVERLTLVEKNLLRLGIFEITSF-DTPQLVAVNEAIELAK 117 Query: 136 DFFYGDEPKFINAVLDKVSRKEE 158 +F +FIN +L + +E Sbjct: 118 NFSDQKSARFINGLLSQFVTEEN 140 >gi|90961508|ref|YP_535424.1| transcription antitermination protein NusB [Lactobacillus salivarius UCC118] gi|227890595|ref|ZP_04008400.1| transcription antitermination protein NusB [Lactobacillus salivarius ATCC 11741] gi|119390778|sp|Q1WUJ4|NUSB_LACS1 RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|90820702|gb|ABD99341.1| N utilization substance protein B [Lactobacillus salivarius UCC118] gi|227867533|gb|EEJ74954.1| transcription antitermination protein NusB [Lactobacillus salivarius ATCC 11741] Length = 131 Score = 130 bits (329), Expect = 5e-29, Method: Composition-based stats. Identities = 34/142 (23%), Positives = 60/142 (42%), Gaps = 12/142 (8%) Query: 12 LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71 +S R R A Q L+ + G + + D DL + Sbjct: 1 MSLSRHDIRKIAFQTLFAL---GSNPDANSEDIYQELLDEDNN--------DSDLSYLNE 49 Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131 ++ GV+D + ID+ I+ L + W+ RL+ ILR + E+ V ++ ++E V Sbjct: 50 LVDGVLDHQSEIDMEITKYLRKNWNIGRLNKTDLIILRIAIFEIKYS-DVASKIAVNEAV 108 Query: 132 CIAHDFFYGDEPKFINAVLDKV 153 +A +F KF+NA+L + Sbjct: 109 ELAKEFSDDKSYKFVNAILQNL 130 >gi|240013567|ref|ZP_04720480.1| transcription antitermination protein NusB [Neisseria gonorrhoeae DGI18] gi|240016006|ref|ZP_04722546.1| transcription antitermination protein NusB [Neisseria gonorrhoeae FA6140] gi|240120636|ref|ZP_04733598.1| transcription antitermination protein NusB [Neisseria gonorrhoeae PID24-1] Length = 161 Score = 130 bits (329), Expect = 5e-29, Method: Composition-based stats. Identities = 43/163 (26%), Positives = 63/163 (38%), Gaps = 18/163 (11%) Query: 2 TIQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVY 61 + +K +K + RR R AVQA+YQ I + EI + S + Sbjct: 13 PNRFKEKIMKTTRRRS--RELAVQAVYQSLINRTAAPEIA-----------KNIREMSDF 59 Query: 62 LHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSV 121 D E F + G I L L+ I ++L EL Sbjct: 60 AKADEELFNKLFFGTQTNAADYIQKIRPLLDRDEK--DLNPIERAVLLTACHELSAMPET 117 Query: 122 PVEVIISEYVCIAHDFFYGDEPKFINAVLDKVS---RKEEIKR 161 P VII+E + + F D KF+N +LDK++ R +E KR Sbjct: 118 PYPVIINEAIEVTKTFGGTDGHKFVNGILDKLAAQIRPDEPKR 160 >gi|260588123|ref|ZP_05854036.1| transcription antitermination factor NusB [Blautia hansenii DSM 20583] gi|260541650|gb|EEX22219.1| transcription antitermination factor NusB [Blautia hansenii DSM 20583] Length = 135 Score = 130 bits (328), Expect = 5e-29, Method: Composition-based stats. Identities = 34/142 (23%), Positives = 59/142 (41%), Gaps = 10/142 (7%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 R R + L+ + T E+ + + Y E Y+ Sbjct: 3 RREMREHIFKLLFLGEFN--ETAEMPEQIQLYFEGLSDLQPTEQAYMENKYAL------- 53 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135 V + + ID L++ + W R+ + +ILR V E+ VPV+V I+E V I+ Sbjct: 54 VKEHLEEIDALLNEK-SAGWKTKRMSKVDLNILRLAVYEMKYDEDVPVKVAINEAVEISK 112 Query: 136 DFFYGDEPKFINAVLDKVSRKE 157 F D F+N +L K++R++ Sbjct: 113 SFGGDDSASFVNGILGKIARED 134 >gi|304440279|ref|ZP_07400169.1| transcription antitermination factor NusB [Peptoniphilus duerdenii ATCC BAA-1640] gi|304371328|gb|EFM24944.1| transcription antitermination factor NusB [Peptoniphilus duerdenii ATCC BAA-1640] Length = 135 Score = 130 bits (328), Expect = 6e-29, Method: Composition-based stats. Identities = 46/141 (32%), Positives = 69/141 (48%), Gaps = 13/141 (9%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 R +AR ++ LYQ+DI + E + Y + E +E+ R I G Sbjct: 3 RRVARRGLMKLLYQMDINEDYSDEALDFYFENSDLKEDE-----------VEFIREHISG 51 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135 ++D+ + ID +I S L E WS R+ I ILR V EL S ++I+E V IA Sbjct: 52 MIDKFEEIDEIIKSNL-EGWSLERISNIDRQILRIAVYEL-YFTSTASNIVINEAVEIAR 109 Query: 136 DFFYGDEPKFINAVLDKVSRK 156 ++ + PKFIN +L + RK Sbjct: 110 EYSSNEAPKFINGILGTIFRK 130 >gi|325682729|ref|ZP_08162245.1| N utilization substance protein B [Lactobacillus reuteri MM4-1A] gi|324977079|gb|EGC14030.1| N utilization substance protein B [Lactobacillus reuteri MM4-1A] Length = 132 Score = 130 bits (328), Expect = 6e-29, Method: Composition-based stats. Identities = 32/142 (22%), Positives = 57/142 (40%), Gaps = 12/142 (8%) Query: 20 RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79 R A Q L+ + S +I + YE + ++ + +++GV + Sbjct: 3 REEAFQVLFALQ--SDSEADIQTVYEAIPHHDEKQIP----------PYLLTLVNGVREH 50 Query: 80 KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139 + +D I+ L W+ +RL ILR + E+ +VP V I+E + + F Sbjct: 51 QDQLDEQINDLLASGWTINRLAKPDLVILRLALFEIQYAENVPTVVAINEALELTKTFSS 110 Query: 140 GDEPKFINAVLDKVSRKEEIKR 161 KFIN L K ++ Sbjct: 111 DKSRKFINGALGKFEKQVNENN 132 >gi|309799755|ref|ZP_07693969.1| transcription antitermination factor NusB [Streptococcus infantis SK1302] gi|308116621|gb|EFO54083.1| transcription antitermination factor NusB [Streptococcus infantis SK1302] Length = 140 Score = 130 bits (328), Expect = 6e-29, Method: Composition-based stats. Identities = 34/143 (23%), Positives = 63/143 (44%), Gaps = 11/143 (7%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 R R A QAL ++ S E + DT++ + + + ++ G Sbjct: 9 RRELRKCAFQALMSLEYG--SDLETACRFAYTHDREDTDVQLPN--------FLVELVSG 58 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135 V +K +D I+ L W+ +RL ++ ++LR GV E+ P V ++E + +A Sbjct: 59 VQAKKDDLDKQITQHLKTGWTINRLTLVEKNLLRLGVFEITSF-DTPQLVAVNEAIELAK 117 Query: 136 DFFYGDEPKFINAVLDKVSRKEE 158 F +FIN +L + +E+ Sbjct: 118 SFSDQKSARFINGLLSQFVTEED 140 >gi|259046624|ref|ZP_05737025.1| N utilization substance protein B [Granulicatella adiacens ATCC 49175] gi|259036789|gb|EEW38044.1| N utilization substance protein B [Granulicatella adiacens ATCC 49175] Length = 153 Score = 130 bits (328), Expect = 6e-29, Method: Composition-based stats. Identities = 36/155 (23%), Positives = 71/155 (45%), Gaps = 11/155 (7%) Query: 6 NKKDLKLSHRRGIARLAAVQALYQIDIIG-----CSTTEIISEYETYRFCADTELDVESV 60 ++K LK R R+ A+QALYQ+D+ + + + E + +D + + + Sbjct: 2 SRKPLK----RRALRVLAIQALYQLDMTPEMHIVDALSLALECSEDSPYSSDAITEEDLI 57 Query: 61 YLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECH- 119 ++ + ++ GV + + ID LI +++W +R+ + I+R + E+ Sbjct: 58 NEVPEIAYSIALVRGVQNNLEKIDGLIEKH-SKRWKLNRIVRLDLIIMRVAIFEMTSPEL 116 Query: 120 SVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVS 154 VP V ++E + IA + KFIN +L Sbjct: 117 EVPQTVALNEAIEIAKTYSDEKSAKFINGILSNFV 151 >gi|182413526|ref|YP_001818592.1| NusB antitermination factor [Opitutus terrae PB90-1] gi|177840740|gb|ACB74992.1| NusB antitermination factor [Opitutus terrae PB90-1] Length = 147 Score = 130 bits (328), Expect = 6e-29, Method: Composition-based stats. Identities = 38/152 (25%), Positives = 67/152 (44%), Gaps = 15/152 (9%) Query: 14 HRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVD-LEWFRVI 72 +R R+AA+Q L+ + D + E++ D + + Sbjct: 7 AQRRDGRVAALQYLFAWSMN-----------RPRNLAEDLRVFFENMEQPRDHYAFGEEL 55 Query: 73 IHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVC 132 IHGV++ ID I L W F R+ I +ILR + E++ +P V I+E + Sbjct: 56 IHGVIEHSDDIDARIKG-LAHNWEFDRIAKIDLTILRLAIFEILHRKDIPPVVSINEAID 114 Query: 133 IAHDFFYGDEPKFINAVLDKVSRKEEIKRSGC 164 ++ F D +FIN +LD++ K+++ R Sbjct: 115 LSKQFSNADAKRFINGILDRL--KDQVGRDAR 144 >gi|322391457|ref|ZP_08064926.1| N utilization substance protein B [Streptococcus peroris ATCC 700780] gi|321145540|gb|EFX40932.1| N utilization substance protein B [Streptococcus peroris ATCC 700780] Length = 140 Score = 130 bits (328), Expect = 6e-29, Method: Composition-based stats. Identities = 33/139 (23%), Positives = 58/139 (41%), Gaps = 11/139 (7%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 R R A QAL ++ I + + D E D + + ++ G Sbjct: 9 RRELRKCAFQALMSLEYGSD-----IETACRFAYTHDREDDEVKL-----PSFLINLVTG 58 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135 V +K+ +D I+ L W+ RL ++ ++LR GV E+ P V ++E + +A Sbjct: 59 VQAQKEELDKQITQHLKAGWTIDRLTLVEKNLLRLGVFEITSF-DTPQLVAVNEAIELAK 117 Query: 136 DFFYGDEPKFINAVLDKVS 154 F +FIN +L + Sbjct: 118 SFSDQKSARFINGLLSQFV 136 >gi|302872150|ref|YP_003840786.1| NusB antitermination factor [Caldicellulosiruptor obsidiansis OB47] gi|302575009|gb|ADL42800.1| NusB antitermination factor [Caldicellulosiruptor obsidiansis OB47] Length = 136 Score = 130 bits (328), Expect = 6e-29, Method: Composition-based stats. Identities = 42/139 (30%), Positives = 71/139 (51%), Gaps = 8/139 (5%) Query: 24 VQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHI 83 ++ LY +II Y+ +R EL+ + VD ++ ++ GV+ +Q I Sbjct: 1 MKILYAYRFENMQ-QDIIEFYKRFR-----ELNQNEDFKDVDEKYLEKLLKGVIQNQQII 54 Query: 84 DLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEP 143 D LI+ ++ W +RL M+ ++R V EL+ VPV V I E V +A F P Sbjct: 55 DNLIAKY-SKDWPLNRLPMVELELMRIAVYELLFEEDVPVSVAIDEAVDMASIFGIEKAP 113 Query: 144 KFINAVLDKVSRKEEIKRS 162 F+N +L +++ + E+KRS Sbjct: 114 SFVNGILGRIA-ENEVKRS 131 >gi|301300970|ref|ZP_07207135.1| transcription antitermination factor NusB [Lactobacillus salivarius ACS-116-V-Col5a] gi|300851437|gb|EFK79156.1| transcription antitermination factor NusB [Lactobacillus salivarius ACS-116-V-Col5a] Length = 131 Score = 130 bits (328), Expect = 7e-29, Method: Composition-based stats. Identities = 34/142 (23%), Positives = 60/142 (42%), Gaps = 12/142 (8%) Query: 12 LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71 +S R R A Q L+ + G + + D DL + Sbjct: 1 MSLSRHDIRKIAFQTLFAL---GSNPDANSEDIYRELLDEDNN--------DSDLSYLNE 49 Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131 ++ GV+D + ID+ I+ L + W+ RL+ ILR + E+ V ++ ++E V Sbjct: 50 LVDGVLDHQSEIDMEITKYLRKNWNIGRLNKTDLIILRIAIFEIKYS-DVASKIAVNEAV 108 Query: 132 CIAHDFFYGDEPKFINAVLDKV 153 +A +F KF+NA+L + Sbjct: 109 ELAKEFSDDKSYKFVNAILQNL 130 >gi|303258269|ref|ZP_07344276.1| transcription antitermination factor NusB [Burkholderiales bacterium 1_1_47] gi|302859022|gb|EFL82106.1| transcription antitermination factor NusB [Burkholderiales bacterium 1_1_47] Length = 188 Score = 130 bits (328), Expect = 7e-29, Method: Composition-based stats. Identities = 32/136 (23%), Positives = 56/136 (41%), Gaps = 14/136 (10%) Query: 21 LAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRK 80 A+Q +YQ + I D + D ++R ++HGV + Sbjct: 55 EFALQGVYQWLMSHTDPEAI-----------DAAALEAEDFDKADQAFYRELLHGVTEEF 103 Query: 81 QHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYG 140 ++ + + + + L I +IL G EL + P V+I+E V +A F Sbjct: 104 PSLETSYAPHIDRE--VTSLSPIERAILLIGTYELKNT-TTPYRVVINEAVELAKSFGGS 160 Query: 141 DEPKFINAVLDKVSRK 156 D K++N VLDK+ + Sbjct: 161 DGFKYVNGVLDKMVPE 176 >gi|288957855|ref|YP_003448196.1| N utilization substance protein B [Azospirillum sp. B510] gi|288910163|dbj|BAI71652.1| N utilization substance protein B [Azospirillum sp. B510] Length = 196 Score = 130 bits (327), Expect = 7e-29, Method: Composition-based stats. Identities = 40/132 (30%), Positives = 69/132 (52%), Gaps = 3/132 (2%) Query: 28 YQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLI 87 YQID+ ++ E+ +R + + D ++ D + F I+ G + R+ +D ++ Sbjct: 53 YQIDLAQAPVENVVGEFVAHRLGEEIDGD---KFVAGDPQLFADIVRGAIHRRAEVDGVL 109 Query: 88 SSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFIN 147 + L ++ RL+++L +ILRAG E+ ++ISEYV +A FF G EP +N Sbjct: 110 GAALDPRFPLDRLELLLRAILRAGAYEIAVHLDTHPRILISEYVDVARAFFSGREPAMVN 169 Query: 148 AVLDKVSRKEEI 159 VLD V+R Sbjct: 170 GVLDHVARALRA 181 >gi|78776604|ref|YP_392919.1| transcription antitermination protein NusB [Sulfurimonas denitrificans DSM 1251] gi|119390845|sp|Q30TJ7|NUSB_SULDN RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|78497144|gb|ABB43684.1| NusB antitermination factor [Sulfurimonas denitrificans DSM 1251] Length = 132 Score = 130 bits (327), Expect = 7e-29, Method: Composition-based stats. Identities = 40/142 (28%), Positives = 59/142 (41%), Gaps = 13/142 (9%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 R AR+A V LY D+ + E E + + + D + + G Sbjct: 4 RHQARMAVVSLLYAFDLGNGNIAEHTDEILEEKKIRNKQKD-----------FALTLYEG 52 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135 VM +D I L + W F RL I + LR E++ + V+I+E V I Sbjct: 53 VMANITPVDEAIVKHL-KDWDFERLGAIERATLRLATYEILFG-ELDSAVVINEAVEITK 110 Query: 136 DFFYGDEPKFINAVLDKVSRKE 157 F PKFIN VLD +S+ + Sbjct: 111 AFGTEQSPKFINGVLDAISKDK 132 >gi|312127939|ref|YP_003992813.1| nusb antitermination factor [Caldicellulosiruptor hydrothermalis 108] gi|311777958|gb|ADQ07444.1| NusB antitermination factor [Caldicellulosiruptor hydrothermalis 108] Length = 134 Score = 130 bits (327), Expect = 8e-29, Method: Composition-based stats. Identities = 42/141 (29%), Positives = 70/141 (49%), Gaps = 8/141 (5%) Query: 24 VQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHI 83 ++ LY T +II Y+ +R EL+ + + +D ++ ++ GV+ +Q I Sbjct: 1 MKILYAYRFED-DTQDIIEFYKKFR-----ELNQDEDFKDIDEKYLERLLKGVIQNQQRI 54 Query: 84 DLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEP 143 D LI ++ W SRL M+ ++R V EL+ VPV V I E V +A F P Sbjct: 55 DNLIEKY-SKDWPLSRLPMVELELMRMAVYELLFEEEVPVSVAIDEAVDMASIFGIEKAP 113 Query: 144 KFINAVLDKVSRKEEIKRSGC 164 F+N +L +++ E+KR Sbjct: 114 SFVNGILGRIA-ANEVKRGQK 133 >gi|289168504|ref|YP_003446773.1| transcription termination factor nusB [Streptococcus mitis B6] gi|288908071|emb|CBJ22911.1| transcription termination factor nusB [Streptococcus mitis B6] Length = 139 Score = 130 bits (327), Expect = 8e-29, Method: Composition-based stats. Identities = 31/142 (21%), Positives = 60/142 (42%), Gaps = 11/142 (7%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 R R A QAL ++ + E + D ++ + + ++ G Sbjct: 9 RRELRKCAFQALMSLEF--DTDVETACHFAYTHDREDADVQIP--------AFLLNLVSG 58 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135 V +K +D I+ L W+ RL ++ ++LR G+ E+ P V ++E + +A Sbjct: 59 VQTQKDELDKQINQHLKPGWTVERLTLVEKNLLRLGIFEITSF-DTPQLVAVNEAIELAK 117 Query: 136 DFFYGDEPKFINAVLDKVSRKE 157 +F +FIN +L + +E Sbjct: 118 NFSDQKSARFINGLLSQFVTEE 139 >gi|260583696|ref|ZP_05851444.1| transcription antitermination factor NusB [Granulicatella elegans ATCC 700633] gi|260158322|gb|EEW93390.1| transcription antitermination factor NusB [Granulicatella elegans ATCC 700633] Length = 154 Score = 130 bits (327), Expect = 9e-29, Method: Composition-based stats. Identities = 45/152 (29%), Positives = 70/152 (46%), Gaps = 18/152 (11%) Query: 15 RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHV---------- 64 +R R+ A+QALYQ+DI +SE++ R D D +S V Sbjct: 7 KRRALRIIAIQALYQMDICKD-----LSEFDAVRLALDVLHDEQSFDEEVYSNEALLDEF 61 Query: 65 -DLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECH-SVP 122 ++ + +I GV ++ + ID LISS L + W +R+ + I+R V E+ VP Sbjct: 62 PEIHYSLDLIQGVQNQLEEIDALISSHL-KGWELNRIVRLDLMIMRVAVCEMRSPELEVP 120 Query: 123 VEVIISEYVCIAHDFFYGDEPKFINAVLDKVS 154 V ++E + IA + KFIN VL Sbjct: 121 QTVALNEAIEIAKLYSDEKSAKFINGVLSNFV 152 >gi|168335572|ref|ZP_02693635.1| transcription termination factor [Epulopiscium sp. 'N.t. morphotype B'] Length = 135 Score = 130 bits (327), Expect = 9e-29, Method: Composition-based stats. Identities = 37/142 (26%), Positives = 58/142 (40%), Gaps = 15/142 (10%) Query: 16 RGIARLAAVQALYQIDIIGCS-TTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74 R AR+ VQ LY + EI++E + Sbjct: 3 RRQARICVVQMLYNLSFHDKEQAQEILNENLLDIKGKVK-------------TFISETFE 49 Query: 75 GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134 G++D ID I + L W+ SR+ + ILR V E+ +P +V I+E V IA Sbjct: 50 GIVDNMDAIDTEIEANLV-DWNLSRIAKVDLMILRLAVYEINYAKDLPPKVAINEAVEIA 108 Query: 135 HDFFYGDEPKFINAVLDKVSRK 156 ++ KFIN +L +++K Sbjct: 109 QEYSTEKSGKFINGILGNMNKK 130 >gi|258511747|ref|YP_003185181.1| NusB antitermination factor [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] gi|257478473|gb|ACV58792.1| NusB antitermination factor [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] Length = 166 Score = 130 bits (327), Expect = 9e-29, Method: Composition-based stats. Identities = 38/161 (23%), Positives = 64/161 (39%), Gaps = 18/161 (11%) Query: 16 RGIARLAAVQALYQIDI-IGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74 R AR A+QAL +D+ + E I+ R D + ++ Sbjct: 3 RHEARECALQALCVLDVQRDLGSAEAIASALAER----------GTDAGGDFTYIEELVD 52 Query: 75 GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134 G ID L++ + E+WS R+ + ++LR EL+ +P+ I E V IA Sbjct: 53 GTRRHLDEIDELLARHM-ERWSPERIGRVERNVLRLATYELLFEPELPIASAIDEAVEIA 111 Query: 135 HDFFYGDEPKFINAVLDKVS------RKEEIKRSGCVSAIT 169 F +F+N VL K+ R+ + + +G Sbjct: 112 KTFATEQSGRFVNGVLAKLLPAVADRRRADTREAGQEKRTA 152 >gi|156743196|ref|YP_001433325.1| NusB antitermination factor [Roseiflexus castenholzii DSM 13941] gi|189035899|sp|A7NP12|NUSB_ROSCS RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|156234524|gb|ABU59307.1| NusB antitermination factor [Roseiflexus castenholzii DSM 13941] Length = 142 Score = 129 bits (326), Expect = 9e-29, Method: Composition-based stats. Identities = 32/154 (20%), Positives = 66/154 (42%), Gaps = 14/154 (9%) Query: 12 LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71 ++ R R A+Q L+++D +++ R + +L E + R Sbjct: 1 MASLRHRVRAIALQILFELDATDHPPDQVVG-----RRLEEEQLPPEGE------RFLRR 49 Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELI--ECHSVPVEVIISE 129 ++ G + H+D +I W S++ + +ILR + E + + P++ II+E Sbjct: 50 LVFGAWEHAAHLDRIIEEA-APNWPVSQMPGVDKAILRIALFEALIDKEEKTPLKAIINE 108 Query: 130 YVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRSG 163 V +A + + +F+N VL V + + G Sbjct: 109 AVELAKQYGSDNSSRFVNGVLGTVVSRYRERSKG 142 >gi|312622738|ref|YP_004024351.1| nusb antitermination factor [Caldicellulosiruptor kronotskyensis 2002] gi|312203205|gb|ADQ46532.1| NusB antitermination factor [Caldicellulosiruptor kronotskyensis 2002] Length = 134 Score = 129 bits (326), Expect = 1e-28, Method: Composition-based stats. Identities = 42/141 (29%), Positives = 70/141 (49%), Gaps = 8/141 (5%) Query: 24 VQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHI 83 ++ LY T +II Y+ +R EL+ + + +D ++ ++ GV+ +Q I Sbjct: 1 MKILYAYRFED-DTQDIIEFYKRFR-----ELNQDEDFKDIDEKYLEKLLKGVIQNQQRI 54 Query: 84 DLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEP 143 D LI ++ W SRL M+ ++R V EL+ VPV V I E V +A F P Sbjct: 55 DNLIEKY-SKDWPLSRLPMVELELMRIAVYELLFEEEVPVSVAIDEAVDMASIFGIEKAP 113 Query: 144 KFINAVLDKVSRKEEIKRSGC 164 F+N +L +++ E+KR Sbjct: 114 SFVNGILGRIA-ANEVKRGQK 133 >gi|222528993|ref|YP_002572875.1| NusB antitermination factor [Caldicellulosiruptor bescii DSM 6725] gi|222455840|gb|ACM60102.1| NusB antitermination factor [Caldicellulosiruptor bescii DSM 6725] Length = 134 Score = 129 bits (326), Expect = 1e-28, Method: Composition-based stats. Identities = 40/141 (28%), Positives = 70/141 (49%), Gaps = 8/141 (5%) Query: 24 VQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHI 83 ++ LY + +II Y+ +R EL+ + + +D ++ ++ GV+ +Q I Sbjct: 1 MKILYAYRFENNT-QDIIEFYKKFR-----ELNQDEDFKDIDEKYLERLLKGVIQNQQKI 54 Query: 84 DLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEP 143 D +I ++ W SRL M+ ++R V EL+ VPV V I E V +A F P Sbjct: 55 DNIIEKY-SKDWPLSRLPMVELELMRIAVYELLFEEEVPVSVAIDEAVDMASIFGIEKAP 113 Query: 144 KFINAVLDKVSRKEEIKRSGC 164 F+N +L +++ E+KR Sbjct: 114 SFVNGILGRIA-ANEVKRGQK 133 >gi|32265536|ref|NP_859568.1| transcription antitermination protein NusB [Helicobacter hepaticus ATCC 51449] gi|39931804|sp|Q7VK55|NUSB_HELHP RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|32261584|gb|AAP76634.1| transcription termination factor NusB [Helicobacter hepaticus ATCC 51449] Length = 157 Score = 129 bits (326), Expect = 1e-28, Method: Composition-based stats. Identities = 45/157 (28%), Positives = 69/157 (43%), Gaps = 16/157 (10%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 R AR A + LY D+ S EI + + + D + ++ G Sbjct: 4 RTQAREAVIGMLYAYDLGNESIIEIARSMLEEKKIKNKQQD-----------FAFSLLQG 52 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECH-SVPVEVIISEYVCIA 134 V++ IDL I+ L E W FSRL + ++LR G E++ P VII+E V + Sbjct: 53 VIEHLSQIDLCIAPYLKE-WEFSRLGGMERAMLRLGAFEILYTETDTP--VIINEAVELG 109 Query: 135 HDFFYGD-EPKFINAVLDKVSRKEEIKRSGCVSAITQ 170 + D P+FIN VLD +S+ + + TQ Sbjct: 110 KMYGGEDNAPRFINGVLDALSKAHTKNKKSEDCSKTQ 146 >gi|331082309|ref|ZP_08331435.1| transcription antitermination factor NusB [Lachnospiraceae bacterium 6_1_63FAA] gi|330400795|gb|EGG80396.1| transcription antitermination factor NusB [Lachnospiraceae bacterium 6_1_63FAA] Length = 135 Score = 129 bits (326), Expect = 1e-28, Method: Composition-based stats. Identities = 34/142 (23%), Positives = 60/142 (42%), Gaps = 10/142 (7%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 R R + L+ + T E+ + + Y E Y+ Sbjct: 3 RREMREHIFKLLFLGEFN--ETEEMPEQIQLYFEGLSDLQPTEQAYMENKYTL------- 53 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135 V + + ID+L++ + W R+ + +ILR V E+ VPV+V I+E V I+ Sbjct: 54 VKEHLEEIDVLLNEK-SAGWKTKRMSKVDLNILRLAVYEMKYDEDVPVKVAINEAVEISK 112 Query: 136 DFFYGDEPKFINAVLDKVSRKE 157 F D F+N +L K++R++ Sbjct: 113 SFGGDDSASFVNGILGKIARED 134 >gi|319942896|ref|ZP_08017179.1| transcription antitermination factor NusB [Lautropia mirabilis ATCC 51599] gi|319743438|gb|EFV95842.1| transcription antitermination factor NusB [Lautropia mirabilis ATCC 51599] Length = 130 Score = 129 bits (326), Expect = 1e-28, Method: Composition-based stats. Identities = 31/143 (21%), Positives = 61/143 (42%), Gaps = 16/143 (11%) Query: 24 VQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHI 83 +Q +YQ + I + ET + D F ++ G + + + Sbjct: 1 MQGIYQWLLSAEDIGAIQAHIET-----------SPGFDKADRSHFDTLLKGTISQASAL 49 Query: 84 DLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEP 143 + ++ L + L + +IL EL + +P V+I+E V +A +F D Sbjct: 50 EAILLPSLDR--PLNLLSPVERAILMQATFELKDLQEIPYRVVINEAVELAKNFGGTDGY 107 Query: 144 KFINAVLDKVS---RKEEIKRSG 163 K++N VLD+++ R E++ +G Sbjct: 108 KYVNGVLDRIAPSVRPHEVRPAG 130 >gi|313905346|ref|ZP_07838712.1| NusB antitermination factor [Eubacterium cellulosolvens 6] gi|313469816|gb|EFR65152.1| NusB antitermination factor [Eubacterium cellulosolvens 6] Length = 170 Score = 129 bits (326), Expect = 1e-28, Method: Composition-based stats. Identities = 41/170 (24%), Positives = 67/170 (39%), Gaps = 21/170 (12%) Query: 15 RRGIARLAAVQALY--QIDIIGCSTTEIISEYETY-----------RFCADTELDVESVY 61 +R R + L+ Q + G E I +Y + A+ E ES Sbjct: 2 KRSELRETIFRLLFMGQFEKSGEGKNEQIGDYLDEMRSGLIEVPYAKLAAEEETREESPA 61 Query: 62 L-------HVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLE 114 D E+ R + + + ID I+ + W SR+ + SI+R V E Sbjct: 62 FVSAIDVSGEDEEYIRTKLAKITEALPEIDEQINKA-SRGWKTSRMPKVDLSIIRLAVYE 120 Query: 115 LIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRSGC 164 +I VP V I+E V IA + + FIN +L +++R + + G Sbjct: 121 MIHDEDVPTGVAINEAVEIAKHYGGEESATFINGILGQIARNCDQETKGE 170 >gi|331001107|ref|ZP_08324738.1| transcription antitermination factor NusB [Parasutterella excrementihominis YIT 11859] gi|329569412|gb|EGG51190.1| transcription antitermination factor NusB [Parasutterella excrementihominis YIT 11859] Length = 159 Score = 129 bits (326), Expect = 1e-28, Method: Composition-based stats. Identities = 32/136 (23%), Positives = 56/136 (41%), Gaps = 14/136 (10%) Query: 21 LAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRK 80 A+Q +YQ + I D + D ++R ++HGV + Sbjct: 26 EFALQGVYQWLMSHTDPEAI-----------DAAALEAEDFDKADQAFYRELLHGVTEEF 74 Query: 81 QHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYG 140 ++ + + + + L I +IL G EL + P V+I+E V +A F Sbjct: 75 PSLEASYAPHIDRE--VTSLSPIERAILLIGTYELKNT-TTPYRVVINEAVELAKSFGGS 131 Query: 141 DEPKFINAVLDKVSRK 156 D K++N VLDK+ + Sbjct: 132 DGFKYVNGVLDKMVPE 147 >gi|312877547|ref|ZP_07737507.1| NusB antitermination factor [Caldicellulosiruptor lactoaceticus 6A] gi|311795688|gb|EFR12057.1| NusB antitermination factor [Caldicellulosiruptor lactoaceticus 6A] Length = 134 Score = 129 bits (326), Expect = 1e-28, Method: Composition-based stats. Identities = 41/141 (29%), Positives = 69/141 (48%), Gaps = 8/141 (5%) Query: 24 VQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHI 83 ++ LY +I+ Y+ +R EL+ + + +D ++ ++ GV+ +Q I Sbjct: 1 MKILYAYRFEDGQ-QDIMEFYKKFR-----ELNQDEDFKDIDEKYLERLLKGVIQNQQRI 54 Query: 84 DLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEP 143 D LI ++ W SRL M+ +LR V EL+ VPV V I E V +A F P Sbjct: 55 DNLIEKY-SKDWPLSRLPMVELELLRIAVYELLFEEDVPVSVAIDEAVDMASIFGIEKAP 113 Query: 144 KFINAVLDKVSRKEEIKRSGC 164 F+N +L +++ E+KR Sbjct: 114 SFVNGILGRIA-ANEVKRGQK 133 >gi|254445455|ref|ZP_05058931.1| transcription antitermination factor NusB [Verrucomicrobiae bacterium DG1235] gi|198259763|gb|EDY84071.1| transcription antitermination factor NusB [Verrucomicrobiae bacterium DG1235] Length = 133 Score = 129 bits (326), Expect = 1e-28, Method: Composition-based stats. Identities = 36/144 (25%), Positives = 67/144 (46%), Gaps = 13/144 (9%) Query: 24 VQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHI 83 +Q +Y I ++ + + + E D S + +IHG+++ + I Sbjct: 1 MQYIYAWSIN--RPNNLVDDLTVFFEGLEEERDYYS--------FAEELIHGMVENSEDI 50 Query: 84 DLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEP 143 D I L + W FSR+ I +ILR EL+ +P V I+E + ++ +F + Sbjct: 51 DDKIMG-LAKNWDFSRIAKIDLAILRLAAYELLFRKDIPPVVTINEAIDLSKEFSTAESR 109 Query: 144 KFINAVLDKVSRKEEIKRSGCVSA 167 +F+N +LDK+ K E+ R ++ Sbjct: 110 RFVNGILDKL--KGELDRPSRTAS 131 >gi|116515210|ref|YP_802839.1| hypothetical protein BCc_285 [Buchnera aphidicola str. Cc (Cinara cedri)] gi|122285394|sp|Q057F3|NUSB_BUCCC RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|116257064|gb|ABJ90746.1| transcription termination [Buchnera aphidicola str. Cc (Cinara cedri)] Length = 142 Score = 129 bits (325), Expect = 1e-28, Method: Composition-based stats. Identities = 36/142 (25%), Positives = 62/142 (43%), Gaps = 12/142 (8%) Query: 12 LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71 + +R AR A+Q LY I F + + ++ +D +F Sbjct: 1 MKSKRRKARELAIQVLYSWQISKKIVL----------FETEKYVIEQNKKYSLDKIYFHK 50 Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131 I+ GV+ + + +RLD I +ILR E+I+ +P +VII+E + Sbjct: 51 IVTGVIKNIFY--IDKIIKKNISKKKNRLDYIEQAILRLASYEIIKRLDIPYKVIINEGI 108 Query: 132 CIAHDFFYGDEPKFINAVLDKV 153 +A + KFIN++LDK+ Sbjct: 109 ELAKIYGSNKSHKFINSILDKI 130 >gi|119962399|ref|YP_948012.1| transcription antitermination factor NusB [Arthrobacter aurescens TC1] gi|166215660|sp|A1R700|NUSB_ARTAT RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|119949258|gb|ABM08169.1| transcription antitermination factor NusB [Arthrobacter aurescens TC1] Length = 136 Score = 129 bits (325), Expect = 1e-28, Method: Composition-based stats. Identities = 34/140 (24%), Positives = 62/140 (44%), Gaps = 14/140 (10%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 RG AR A++ L++ + S + ++ R D ++ + I+ G Sbjct: 4 RGKARSRALEVLFEAEQRSVSAFDAMT---ARREKTDLVIN----------PYTVEIVEG 50 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135 V+ + ID + + + W+ R+ + ILR G EL+ VP V +SE V +A Sbjct: 51 VVSMQATIDEFLQTY-AQGWTLERMPSVDRIILRIGAWELLYNDEVPDGVAVSEAVALAK 109 Query: 136 DFFYGDEPKFINAVLDKVSR 155 + P FIN +L ++ + Sbjct: 110 TMSTDESPAFINGLLGRLQK 129 >gi|319789884|ref|YP_004151517.1| NusB antitermination factor [Thermovibrio ammonificans HB-1] gi|317114386|gb|ADU96876.1| NusB antitermination factor [Thermovibrio ammonificans HB-1] Length = 142 Score = 129 bits (325), Expect = 1e-28, Method: Composition-based stats. Identities = 41/149 (27%), Positives = 66/149 (44%), Gaps = 12/149 (8%) Query: 10 LKLSHR-RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEW 68 + L++R + AR A +YQ+D+ E+ Y + E+ S Y Sbjct: 1 MALTNREKKKAREHACLIMYQVDVGNLPLKEVTENYWSDFGKEKEEIKELSEY------- 53 Query: 69 FRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIIS 128 ++ ++ + +D I L + W RL + SILR E++ P E +I+ Sbjct: 54 ---LVKKTIEHLEEVDRAIGKHLKKGWVIERLLPMDRSILRVASYEILNEEISPPEAVIN 110 Query: 129 EYVCIAHDFF-YGDEPKFINAVLDKVSRK 156 + V IA + PKFINA+LDKV R Sbjct: 111 DAVEIAKSYGEDEKSPKFINAILDKVKRD 139 >gi|183602591|ref|ZP_02963956.1| NusB antitermination protein [Bifidobacterium animalis subsp. lactis HN019] gi|219683633|ref|YP_002470016.1| transcription antitermination factor NusB [Bifidobacterium animalis subsp. lactis AD011] gi|241190665|ref|YP_002968059.1| transcription termination factor [Bifidobacterium animalis subsp. lactis Bl-04] gi|241196071|ref|YP_002969626.1| transcription termination factor [Bifidobacterium animalis subsp. lactis DSM 10140] gi|254772615|sp|B8DTW1|NUSB_BIFA0 RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|183218232|gb|EDT88878.1| NusB antitermination protein [Bifidobacterium animalis subsp. lactis HN019] gi|219621283|gb|ACL29440.1| transcription antitermination factor NusB [Bifidobacterium animalis subsp. lactis AD011] gi|240249057|gb|ACS45997.1| Transcription termination factor [Bifidobacterium animalis subsp. lactis Bl-04] gi|240250625|gb|ACS47564.1| Transcription termination factor [Bifidobacterium animalis subsp. lactis DSM 10140] gi|289178403|gb|ADC85649.1| N utilization substance protein B [Bifidobacterium animalis subsp. lactis BB-12] gi|295793654|gb|ADG33189.1| Transcription termination factor [Bifidobacterium animalis subsp. lactis V9] Length = 154 Score = 129 bits (325), Expect = 1e-28, Method: Composition-based stats. Identities = 33/149 (22%), Positives = 62/149 (41%), Gaps = 14/149 (9%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 R AR A+ LY+ D G ++ E + E+ I+ G Sbjct: 3 RSTARRRALNTLYEADEKGQDFLSLLDERIA-----------QPGAQTPLPEYAIEIVRG 51 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135 V + ++ ID +++ + W R+ I +ILR E++ VP +V I E + ++ Sbjct: 52 VDEHRRDIDSQLNTH-STGWKVKRMHAIDRNILRIATWEILYNDDVPDKVAIDEALNLSK 110 Query: 136 DFFYGDEPKFINAVLDKV--SRKEEIKRS 162 P FI+ VL + ++ ++ +S Sbjct: 111 TLSDDAAPSFIHGVLSAIVAAKDKQSPQS 139 >gi|158320645|ref|YP_001513152.1| NusB antitermination factor [Alkaliphilus oremlandii OhILAs] gi|166918801|sp|A8MFJ3|NUSB_ALKOO RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|158140844|gb|ABW19156.1| NusB antitermination factor [Alkaliphilus oremlandii OhILAs] Length = 138 Score = 129 bits (325), Expect = 1e-28, Method: Composition-based stats. Identities = 28/142 (19%), Positives = 57/142 (40%), Gaps = 12/142 (8%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 R +AR ++ L+++ I + E E+ +++ Sbjct: 3 RKLARELTMKVLFEMHINN-----------DFNIQRVEHHLFEGSIEEQQKEYIHKVLNE 51 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135 + + ID +I + W +R+ + +ILR E+I +P V I+E + +A Sbjct: 52 AILNLEAIDSIIEEY-STSWKLNRIANVDLAILRLAFSEIIYMKDIPYRVSINEAIELAK 110 Query: 136 DFFYGDEPKFINAVLDKVSRKE 157 + + P F+N +L K +E Sbjct: 111 IYGSDETPNFVNGILGKYVEQE 132 >gi|33594361|ref|NP_882005.1| transcription antitermination protein NusB [Bordetella pertussis Tohama I] gi|33595544|ref|NP_883187.1| transcription antitermination protein NusB [Bordetella parapertussis 12822] gi|33599942|ref|NP_887502.1| transcription antitermination protein NusB [Bordetella bronchiseptica RB50] gi|39931820|sp|Q7VTN3|NUSB_BORPE RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|39931833|sp|Q7W142|NUSB_BORPA RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|39931858|sp|Q7WNT2|NUSB_BORBR RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|33564436|emb|CAE43747.1| N utilization substance protein B [Bordetella pertussis Tohama I] gi|33565622|emb|CAE40268.1| N utilization substance protein B [Bordetella parapertussis] gi|33567539|emb|CAE31452.1| N utilization substance protein B [Bordetella bronchiseptica RB50] gi|332383772|gb|AEE68619.1| transcription antitermination protein NusB [Bordetella pertussis CS] Length = 154 Score = 129 bits (325), Expect = 1e-28, Method: Composition-based stats. Identities = 34/131 (25%), Positives = 57/131 (43%), Gaps = 9/131 (6%) Query: 24 VQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHI 83 +Q +Y + G T+ E + + L + D +WF+ ++HGV+ + Sbjct: 19 LQGVYAWLLRGGEGTQDAGEIDAH-------LRDAEDFSEADAQWFKTLLHGVLREAPVL 71 Query: 84 DLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEP 143 + + L + IL G EL+ VP +V I+E V +A F D Sbjct: 72 RERFLPYIDR--PLAELSPVEHGILLIGSFELMHHVEVPYKVAINEAVELAKSFGGTDGF 129 Query: 144 KFINAVLDKVS 154 KF+N VLDK++ Sbjct: 130 KFVNGVLDKLA 140 >gi|261392944|emb|CAX50529.1| N utilization substance protein B (NusB protein) [Neisseria meningitidis 8013] gi|325127809|gb|EGC50717.1| transcription antitermination factor NusB [Neisseria meningitidis N1568] Length = 141 Score = 129 bits (325), Expect = 1e-28, Method: Composition-based stats. Identities = 42/155 (27%), Positives = 60/155 (38%), Gaps = 18/155 (11%) Query: 10 LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF 69 +K + RR R AVQA+YQ I + EI + S + D E F Sbjct: 1 MKTARRRS--RELAVQAVYQSLINRTAAPEIA-----------KNIREMSDFAKADEELF 47 Query: 70 RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISE 129 + G I L L+ I ++L EL P VII+E Sbjct: 48 NKLFFGTQTNAAEYIQQIRPLLDRDEK--DLNPIERAVLLTACHELSAMPETPYPVIINE 105 Query: 130 YVCIAHDFFYGDEPKFINAVLDKVS---RKEEIKR 161 + + F D KF+N +LDK++ R +E KR Sbjct: 106 AIEVTKTFGGTDGHKFVNGILDKLAAQIRPDEPKR 140 >gi|171740948|ref|ZP_02916755.1| hypothetical protein BIFDEN_00009 [Bifidobacterium dentium ATCC 27678] gi|306823314|ref|ZP_07456689.1| transcription antitermination factor NusB [Bifidobacterium dentium ATCC 27679] gi|309802656|ref|ZP_07696760.1| transcription antitermination factor NusB [Bifidobacterium dentium JCVIHMP022] gi|171276562|gb|EDT44223.1| hypothetical protein BIFDEN_00009 [Bifidobacterium dentium ATCC 27678] gi|304553021|gb|EFM40933.1| transcription antitermination factor NusB [Bifidobacterium dentium ATCC 27679] gi|308220720|gb|EFO77028.1| transcription antitermination factor NusB [Bifidobacterium dentium JCVIHMP022] Length = 147 Score = 129 bits (325), Expect = 1e-28, Method: Composition-based stats. Identities = 35/139 (25%), Positives = 56/139 (40%), Gaps = 12/139 (8%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 R AR A+ LY+ D G +++E D + I+ G Sbjct: 3 RSTARKRALNTLYEADEKGQDILSLLAERIEQPGAQTPLPD-----------YAIEIVRG 51 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135 V + ID ++ + W R+ ++ +ILR V E++ VP V I E + +A Sbjct: 52 VAENLYRIDSVLDEH-STGWKVKRMGVVDRNILRIAVWEIMFNDDVPNMVAIDEALGLAK 110 Query: 136 DFFYGDEPKFINAVLDKVS 154 D P FI+ +L VS Sbjct: 111 TLCDDDSPAFIHGLLSAVS 129 >gi|166030414|ref|ZP_02233243.1| hypothetical protein DORFOR_00075 [Dorea formicigenerans ATCC 27755] gi|166029772|gb|EDR48529.1| hypothetical protein DORFOR_00075 [Dorea formicigenerans ATCC 27755] Length = 132 Score = 129 bits (325), Expect = 1e-28, Method: Composition-based stats. Identities = 38/140 (27%), Positives = 65/140 (46%), Gaps = 9/140 (6%) Query: 15 RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74 +R R + ++ + S E+ + + Y D E E D+ + R Sbjct: 2 KRTEMREHIFRMVFSYEFN--SDQEMPQQMQLYFEQLDQEPKEE------DMAYIRDKAL 53 Query: 75 GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134 V+ + + ID +++ +T W SR++ + SILR V E+ VPV V I+E V +A Sbjct: 54 NVILKSEEIDEMLNEHVT-GWKTSRMNKVDLSILRLAVYEMKYDEDVPVGVAINEAVELA 112 Query: 135 HDFFYGDEPKFINAVLDKVS 154 + + P FIN VL ++S Sbjct: 113 KKYSGDEGPAFINGVLARLS 132 >gi|163840712|ref|YP_001625117.1| transcription antitermination factor [Renibacterium salmoninarum ATCC 33209] gi|162954188|gb|ABY23703.1| transcription antitermination factor [Renibacterium salmoninarum ATCC 33209] Length = 143 Score = 129 bits (325), Expect = 1e-28, Method: Composition-based stats. Identities = 34/153 (22%), Positives = 60/153 (39%), Gaps = 19/153 (12%) Query: 1 MTIQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESV 60 MT + + R AR A+ L++ S E++ Sbjct: 1 MTEKSA-----GTSARSKARRRALDILFEAGQRDVSAAEVLKLRR-------------ER 42 Query: 61 YLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHS 120 + + II GV +++ ID + + + W+ R+ + LR G EL+ Sbjct: 43 TDQIINPYSVDIIDGVGQKQEEIDEFLQTY-AQGWTLERMPAVDLIALRIGAWELLYNDD 101 Query: 121 VPVEVIISEYVCIAHDFFYGDEPKFINAVLDKV 153 VP V +SE V +A + P+FIN +L ++ Sbjct: 102 VPDAVAVSEAVELAKQLSTDESPQFINGLLGRL 134 >gi|89901446|ref|YP_523917.1| NusB antitermination factor [Rhodoferax ferrireducens T118] gi|119390807|sp|Q21V17|NUSB_RHOFD RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|89346183|gb|ABD70386.1| NusB antitermination factor [Rhodoferax ferrireducens T118] Length = 177 Score = 129 bits (325), Expect = 2e-28, Method: Composition-based stats. Identities = 43/184 (23%), Positives = 68/184 (36%), Gaps = 35/184 (19%) Query: 1 MTIQDNKKDLKLSHR-------------------RGIARLAAVQALYQIDIIGCSTTEII 41 MT Q K R R AR A+QALYQ + + ++I Sbjct: 1 MTEQPTKPTGSRPPRQPRTGLTSTGARKAGSKSDRSRAREFALQALYQSLVGKNTVSDI- 59 Query: 42 SEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLD 101 D + + D F ++ G ++ L F+ + Sbjct: 60 ----------DAFTRDLAGFSKADSLHFDTLLQGCTEQAAA--LDALLLPLLDRKFAEIS 107 Query: 102 MILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVS---RKEE 158 I SI+ G EL C VP V+++E V +A +F D K++NAVL+ ++ R E Sbjct: 108 PIEHSIMWIGAFELQHCLDVPWRVVLNECVELAKEFGGTDGHKYVNAVLNSLAPSLRAAE 167 Query: 159 IKRS 162 + Sbjct: 168 VNAD 171 >gi|302343804|ref|YP_003808333.1| NusB antitermination factor [Desulfarculus baarsii DSM 2075] gi|301640417|gb|ADK85739.1| NusB antitermination factor [Desulfarculus baarsii DSM 2075] Length = 142 Score = 129 bits (324), Expect = 2e-28, Method: Composition-based stats. Identities = 32/139 (23%), Positives = 63/139 (45%), Gaps = 13/139 (9%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 R ++R A++ LYQ++ ++ + F A +L + R ++ G Sbjct: 4 RSLSRELALKVLYQMEHGDQDAEAALTVF-AENFAAPEKL----------FAYTRQLVLG 52 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLEL-IECHSVPVEVIISEYVCIA 134 V ++ ID +++ ++ KW R+ + +ILR E+ + VP + ISE + ++ Sbjct: 53 VEQNRRRIDEMLNR-VSRKWRVERMSWVDRNILRLACYEIYLAPQPVPPKAAISEALDLS 111 Query: 135 HDFFYGDEPKFINAVLDKV 153 + FIN VLD + Sbjct: 112 KRYAEDCSCSFINGVLDSL 130 >gi|309789561|ref|ZP_07684142.1| NusB antitermination factor [Oscillochloris trichoides DG6] gi|308228297|gb|EFO81944.1| NusB antitermination factor [Oscillochloris trichoides DG6] Length = 150 Score = 129 bits (324), Expect = 2e-28, Method: Composition-based stats. Identities = 36/147 (24%), Positives = 65/147 (44%), Gaps = 14/147 (9%) Query: 12 LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71 ++ R R+AA+Q L+++D + R D EL E + Sbjct: 1 MASLRHRVRIAALQVLFEVDATDHPIDVVYE-----RRLVDEELPAEGE------RFLNQ 49 Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELI--ECHSVPVEVIISE 129 I+ G + + ++D +I W +++ + +ILR + EL+ E PV+ +I+E Sbjct: 50 IVFGSWEHRSYLDGVIEEA-APNWPVTQMPGVDKAILRIAIFELLIDEVEQTPVKAVINE 108 Query: 130 YVCIAHDFFYGDEPKFINAVLDKVSRK 156 V +A F + +FIN VL V + Sbjct: 109 AVELAKHFGSDNSSRFINGVLGTVVNR 135 >gi|218961705|ref|YP_001741480.1| N utilization substance protein B [Candidatus Cloacamonas acidaminovorans] gi|167730362|emb|CAO81274.1| N utilization substance protein B [Candidatus Cloacamonas acidaminovorans] Length = 153 Score = 129 bits (324), Expect = 2e-28, Method: Composition-based stats. Identities = 33/150 (22%), Positives = 62/150 (41%), Gaps = 16/150 (10%) Query: 15 RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVD--------L 66 +R AR AVQ LY ++ E+ +Y Y + D+ + Sbjct: 3 QRRKAREMAVQCLYSLEFS-----EVEKDYREYGLLNEY-PDILLSLAEAEHIQPNSPVY 56 Query: 67 EWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVI 126 + ++ + + ++ I L++ W + ++ SIL EL+ P V+ Sbjct: 57 AFADELVKNTIINIEQVESEIDK-LSDNWELEDIALLDRSILCLAAYELLFT-DTPAPVV 114 Query: 127 ISEYVCIAHDFFYGDEPKFINAVLDKVSRK 156 I+E + IA F KFIN +LD ++++ Sbjct: 115 INEAIEIAKKFSSEASGKFINGILDALNKE 144 >gi|261337964|ref|ZP_05965848.1| transcription antitermination factor NusB [Bifidobacterium gallicum DSM 20093] gi|270277459|gb|EFA23313.1| transcription antitermination factor NusB [Bifidobacterium gallicum DSM 20093] Length = 149 Score = 129 bits (324), Expect = 2e-28, Method: Composition-based stats. Identities = 34/138 (24%), Positives = 57/138 (41%), Gaps = 12/138 (8%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 R AR A+ LY+ D ++ E VE E+ I+ G Sbjct: 3 RSTARKRALNTLYEADEKDQDIKSLLQERI-----------VEPGAQTPLPEYAIEIVEG 51 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135 V D ++ +D +I+ + W R+ +I +ILR E+I +P +V I E + +A Sbjct: 52 VADNRKDLDRIINEH-STGWKVWRMPVIDRNILRIAAWEIIHNDEIPDKVAIDEALNLAK 110 Query: 136 DFFYGDEPKFINAVLDKV 153 + FI+ VL + Sbjct: 111 TLSDDESLGFIHGVLSAI 128 >gi|222526903|ref|YP_002571374.1| NusB antitermination factor [Chloroflexus sp. Y-400-fl] gi|254772624|sp|B9LDT2|NUSB_CHLSY RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|222450782|gb|ACM55048.1| NusB antitermination factor [Chloroflexus sp. Y-400-fl] Length = 151 Score = 129 bits (324), Expect = 2e-28, Method: Composition-based stats. Identities = 32/158 (20%), Positives = 71/158 (44%), Gaps = 14/158 (8%) Query: 11 KLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFR 70 +L+ +R R+AA+Q L+++D + +++ T + E+ R Sbjct: 5 RLASQRHRVRIAALQILFEVDETDHAIDQVLERRLT-----------DEPMSQESAEFLR 53 Query: 71 VIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELI--ECHSVPVEVIIS 128 ++ G + + ++D +I W +++ + ++LR + EL+ + P++ +I+ Sbjct: 54 RLVFGAWEHRSYLDRIIEEA-APNWPVAQMPGVDKAVLRIALFELLIDDVERTPIKAVIN 112 Query: 129 EYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRSGCVS 166 E V +A F + +F+N VL V + R V Sbjct: 113 EAVELAKQFGSDNSSRFVNGVLGTVVTRYLADRDDTVE 150 >gi|309378212|emb|CBX23156.1| unnamed protein product [Neisseria lactamica Y92-1009] Length = 141 Score = 129 bits (324), Expect = 2e-28, Method: Composition-based stats. Identities = 42/155 (27%), Positives = 59/155 (38%), Gaps = 18/155 (11%) Query: 10 LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF 69 +K + RR R AVQA+YQ I + EI + S + D E F Sbjct: 1 MKTARRRS--RELAVQAVYQSLINRTAAPEIA-----------KNIREMSDFAKADEELF 47 Query: 70 RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISE 129 + G I L L+ I ++L EL P VII+E Sbjct: 48 NKLFFGTQTNAAEYIRQIRPLLDRDEK--DLNPIERAVLLTACHELSAMPETPYPVIINE 105 Query: 130 YVCIAHDFFYGDEPKFINAVLDKVS---RKEEIKR 161 + + F D KF+N +LDK++ R E KR Sbjct: 106 AIEVTKTFGGTDGHKFVNGILDKLAAQIRPNEPKR 140 >gi|225377103|ref|ZP_03754324.1| hypothetical protein ROSEINA2194_02748 [Roseburia inulinivorans DSM 16841] gi|225211008|gb|EEG93362.1| hypothetical protein ROSEINA2194_02748 [Roseburia inulinivorans DSM 16841] Length = 130 Score = 129 bits (324), Expect = 2e-28, Method: Composition-based stats. Identities = 28/139 (20%), Positives = 62/139 (44%), Gaps = 11/139 (7%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 R R + L++++ + ++ + + + D E+ H Sbjct: 3 RRGLREQVFKMLFRVEF--HNVEDMPEQMNMFEEVEE--------CSEKDKEYISNKFHN 52 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135 ++++ ID I+ ++E W R+ + +++R V E+ +PV+V I+E V +A Sbjct: 53 IVEKIDEIDAAINE-VSEGWKTRRMGKVDLTLIRLAVYEMKYEDDIPVKVAINEAVELAK 111 Query: 136 DFFYGDEPKFINAVLDKVS 154 + + P F+N VL K++ Sbjct: 112 QYGTDESPAFVNGVLAKLA 130 >gi|312793191|ref|YP_004026114.1| nusb antitermination factor [Caldicellulosiruptor kristjanssonii 177R1B] gi|312180331|gb|ADQ40501.1| NusB antitermination factor [Caldicellulosiruptor kristjanssonii 177R1B] Length = 134 Score = 128 bits (323), Expect = 2e-28, Method: Composition-based stats. Identities = 40/141 (28%), Positives = 69/141 (48%), Gaps = 8/141 (5%) Query: 24 VQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHI 83 ++ LY +I+ Y+ +R EL+ + + +D ++ ++ GV+ +Q I Sbjct: 1 MKILYAYRFEDGQ-QDIMEFYKKFR-----ELNQDEDFKDIDEKYLERLLKGVIQNQQRI 54 Query: 84 DLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEP 143 D LI ++ W SRL M+ ++R V EL+ VPV V I E V +A F P Sbjct: 55 DNLIEKY-SKDWPLSRLPMVELELMRIAVYELLFEEDVPVSVAIDEAVDMASIFGIEKAP 113 Query: 144 KFINAVLDKVSRKEEIKRSGC 164 F+N +L +++ E+KR Sbjct: 114 SFVNGILGRIA-ANEVKRGQK 133 >gi|225021344|ref|ZP_03710536.1| hypothetical protein CORMATOL_01363 [Corynebacterium matruchotii ATCC 33806] gi|224945726|gb|EEG26935.1| hypothetical protein CORMATOL_01363 [Corynebacterium matruchotii ATCC 33806] Length = 277 Score = 128 bits (323), Expect = 2e-28, Method: Composition-based stats. Identities = 37/133 (27%), Positives = 58/133 (43%), Gaps = 7/133 (5%) Query: 26 ALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDL 85 LY+ + I+ + V+ + + II GV + ID Sbjct: 1 MLYEAEARDVDPVAIVEDRINLA-------RVDITLVAPIAAYTSEIIAGVAEELNRIDD 53 Query: 86 LISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKF 145 +I+ L E W SR+ + +ILR V E+I VPV+ +SE V +A + P + Sbjct: 54 VIAEYLAENWELSRISAVDRAILRVAVWEMIFNPDVPVKTALSEAVELASQYSGASAPAY 113 Query: 146 INAVLDKVSRKEE 158 INAVLD V + + Sbjct: 114 INAVLDSVVKNID 126 >gi|255327156|ref|ZP_05368231.1| transcription antitermination factor NusB [Rothia mucilaginosa ATCC 25296] gi|283458028|ref|YP_003362637.1| transcription termination factor [Rothia mucilaginosa DY-18] gi|255295774|gb|EET75116.1| transcription antitermination factor NusB [Rothia mucilaginosa ATCC 25296] gi|283134052|dbj|BAI64817.1| transcription termination factor [Rothia mucilaginosa DY-18] Length = 136 Score = 128 bits (323), Expect = 2e-28, Method: Composition-based stats. Identities = 39/140 (27%), Positives = 61/140 (43%), Gaps = 14/140 (10%) Query: 14 HRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVII 73 + R ARL A++ L++ D E++ Y + + II Sbjct: 2 NSRTKARLRALEVLFEADQRNEDYIEVLRRRRLYTVAQIS-------------AYSEEII 48 Query: 74 HGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCI 133 GV D + I + + WSF R+ + ++LR G EL+ VP V ISE V + Sbjct: 49 RGVRDHDEEIREFVETY-ARDWSFERMPAVDRAVLRIGTWELLYNDEVPDAVAISEAVGL 107 Query: 134 AHDFFYGDEPKFINAVLDKV 153 A + PKF+N +LDK+ Sbjct: 108 ARVLSTNESPKFVNGLLDKL 127 >gi|163848950|ref|YP_001636994.1| transcription antitermination factor NusB [Chloroflexus aurantiacus J-10-fl] gi|163670239|gb|ABY36605.1| transcription antitermination factor NusB [Chloroflexus aurantiacus J-10-fl] Length = 153 Score = 128 bits (323), Expect = 2e-28, Method: Composition-based stats. Identities = 32/158 (20%), Positives = 71/158 (44%), Gaps = 14/158 (8%) Query: 11 KLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFR 70 +L+ +R R+AA+Q L+++D + +++ T + E+ R Sbjct: 7 RLASQRHRVRIAALQILFEVDETDHAIDQVLERRLT-----------DEPMSQESAEFLR 55 Query: 71 VIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELI--ECHSVPVEVIIS 128 ++ G + + ++D +I W +++ + ++LR + EL+ + P++ +I+ Sbjct: 56 RLVFGAWEHRSYLDRIIEEA-APNWPVAQMPGVDKAVLRIALFELLIDDVERTPIKAVIN 114 Query: 129 EYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRSGCVS 166 E V +A F + +F+N VL V + R V Sbjct: 115 EAVELAKQFGSDNSSRFVNGVLGTVVTRYLADRDDTVE 152 >gi|304436643|ref|ZP_07396612.1| transcription antitermination factor NusB [Selenomonas sp. oral taxon 149 str. 67H29BP] gi|304370339|gb|EFM23995.1| transcription antitermination factor NusB [Selenomonas sp. oral taxon 149 str. 67H29BP] Length = 137 Score = 128 bits (323), Expect = 2e-28, Method: Composition-based stats. Identities = 26/141 (18%), Positives = 55/141 (39%), Gaps = 10/141 (7%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 R AR AA+ L+Q + + + D D DL + ++ G Sbjct: 3 RRHAREAALLTLFQREFDQDRPPTVAA--------GDLASDAVDGLTEKDLAYANGLVQG 54 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHS-VPVEVIISEYVCIA 134 + ID I + ++W R+ + +++R E+ + + I+E V +A Sbjct: 55 TCSVQPEIDAAIER-MAKEWKLHRMAPVDRNLIRMAYYEMCYQEERIDPPIAINEAVELA 113 Query: 135 HDFFYGDEPKFINAVLDKVSR 155 + D +++N +L + + Sbjct: 114 KKYGSDDAGRYVNGILAALQK 134 >gi|148655139|ref|YP_001275344.1| NusB antitermination factor [Roseiflexus sp. RS-1] gi|166215713|sp|A5URZ1|NUSB_ROSS1 RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|148567249|gb|ABQ89394.1| NusB antitermination factor [Roseiflexus sp. RS-1] Length = 142 Score = 128 bits (323), Expect = 2e-28, Method: Composition-based stats. Identities = 32/154 (20%), Positives = 65/154 (42%), Gaps = 14/154 (9%) Query: 12 LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71 ++ R R A+Q L+++D S ++++ E + R Sbjct: 1 MASLRRRVRAIALQILFELDATDHSPDQVVARRLE-----------EERLPPEGERFLRR 49 Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELI--ECHSVPVEVIISE 129 ++ G + ++D +I W S++ + +ILR + E + E P++ II+E Sbjct: 50 LVFGAWEHASYLDRIIEET-APNWPVSQMPGVDKAILRIALFEALIDEEEKTPLKAIINE 108 Query: 130 YVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRSG 163 V +A + + +F+N VL V + +R G Sbjct: 109 AVELAKQYGSDNSSRFVNGVLGTVVSRYRERRKG 142 >gi|218289636|ref|ZP_03493856.1| NusB antitermination factor [Alicyclobacillus acidocaldarius LAA1] gi|218240286|gb|EED07469.1| NusB antitermination factor [Alicyclobacillus acidocaldarius LAA1] Length = 165 Score = 128 bits (323), Expect = 2e-28, Method: Composition-based stats. Identities = 36/139 (25%), Positives = 59/139 (42%), Gaps = 12/139 (8%) Query: 16 RGIARLAAVQALYQIDI-IGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74 R AR A+QAL +D+ + E I+ R + D + ++ Sbjct: 3 RHEARECALQALCVLDVQRDLGSAEAIASVLAER----------GLDAGGDWAYIEELVD 52 Query: 75 GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134 G ID L++ + E+WS R+ + ++LR EL+ +P+ I E V IA Sbjct: 53 GTRRHLGEIDELLARHM-ERWSPERIGRVERNVLRLATYELLFEPELPIASAIDEAVQIA 111 Query: 135 HDFFYGDEPKFINAVLDKV 153 F +F+N VL K+ Sbjct: 112 KTFATEQSGRFVNGVLAKL 130 >gi|226320701|ref|ZP_03796259.1| transcription antitermination factor NusB [Borrelia burgdorferi 29805] gi|226233917|gb|EEH32640.1| transcription antitermination factor NusB [Borrelia burgdorferi 29805] Length = 693 Score = 128 bits (323), Expect = 2e-28, Method: Composition-based stats. Identities = 40/143 (27%), Positives = 66/143 (46%), Gaps = 9/143 (6%) Query: 17 GIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGV 76 R+ A Q +Y IDI + +I + D LD+E+ + ++ ++ G Sbjct: 2 HEVRVLAFQKIYSIDINQSAMDDIFDIFN----IEDKGLDIENESIK---SFYSSLVIGT 54 Query: 77 MDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECH-SVPVEVIISEYVCIAH 135 + +HID LI ++ WS R+D + +ILR GV L + II E + IA Sbjct: 55 FNNLEHIDSLIRD-ISLNWSLERMDKVDLAILRMGVYSLKFQNFENSKRAIIDEAILIAK 113 Query: 136 DFFYGDEPKFINAVLDKVSRKEE 158 + + KFIN +LD + + E Sbjct: 114 KYGSKNSYKFINGILDALLKNME 136 >gi|296123835|ref|YP_003631613.1| transcription antitermination factor NusB [Planctomyces limnophilus DSM 3776] gi|296016175|gb|ADG69414.1| transcription antitermination factor NusB [Planctomyces limnophilus DSM 3776] Length = 163 Score = 128 bits (323), Expect = 3e-28, Method: Composition-based stats. Identities = 39/157 (24%), Positives = 67/157 (42%), Gaps = 14/157 (8%) Query: 10 LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF 69 + +S RR AR +Q LY D+ +E R EL E++ + Sbjct: 1 MSMS-RRHKAREVVLQMLYLKDLNPD------VGFEQIRQMIQAELPDETL-----SRFA 48 Query: 70 RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISE 129 + G M+ + +D I WS SR+ ++LR G EL++ P V+I E Sbjct: 49 WGLFSGAMEFRPALDKKIEEAAV-NWSLSRMAPTDRNVLRLGAYELLQT-DTPHRVVIDE 106 Query: 130 YVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRSGCVS 166 + +A F + F+N +LD++ E+ R+ + Sbjct: 107 ALELAKSFGGANSGSFVNGILDRLLPPEKRARAAKPT 143 >gi|167758087|ref|ZP_02430214.1| hypothetical protein CLOSCI_00425 [Clostridium scindens ATCC 35704] gi|167663984|gb|EDS08114.1| hypothetical protein CLOSCI_00425 [Clostridium scindens ATCC 35704] Length = 132 Score = 128 bits (323), Expect = 3e-28, Method: Composition-based stats. Identities = 37/141 (26%), Positives = 59/141 (41%), Gaps = 12/141 (8%) Query: 15 RRGIARLAAVQALYQIDII-GCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVII 73 +R R + L+ ++ G E + Y A DL++ R + Sbjct: 2 KRTEQREHIFKMLFGVEFNAGGDMPEQLELYFGQLEGA----------GEKDLDYIREKV 51 Query: 74 HGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCI 133 + + + ID LI+ T W SR++ + +ILR V E+ VP V I E V + Sbjct: 52 QKIASKVEEIDALINEHTTR-WKTSRMNKVDLTILRLAVYEMRWDEDVPTGVAIDEAVEL 110 Query: 134 AHDFFYGDEPKFINAVLDKVS 154 A + D P F+N VL K+ Sbjct: 111 AKKYSSEDGPSFVNGVLAKLV 131 >gi|218767806|ref|YP_002342318.1| transcription antitermination protein NusB [Neisseria meningitidis Z2491] gi|296315043|ref|ZP_06864984.1| transcription antitermination factor NusB [Neisseria polysaccharea ATCC 43768] gi|313668841|ref|YP_004049125.1| RNA polymerase antitermination factor [Neisseria lactamica ST-640] gi|22095968|sp|Q9JVD5|NUSB_NEIMA RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|121051814|emb|CAM08120.1| putative RNA polymerase antitermination factor [Neisseria meningitidis Z2491] gi|296838251|gb|EFH22189.1| transcription antitermination factor NusB [Neisseria polysaccharea ATCC 43768] gi|313006303|emb|CBN87766.1| putative RNA polymerase antitermination factor [Neisseria lactamica 020-06] gi|319410056|emb|CBY90390.1| N utilization substance protein B (NusB protein) [Neisseria meningitidis WUE 2594] Length = 141 Score = 128 bits (322), Expect = 3e-28, Method: Composition-based stats. Identities = 41/155 (26%), Positives = 59/155 (38%), Gaps = 18/155 (11%) Query: 10 LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF 69 +K + RR R AVQA+YQ I + EI + + D E F Sbjct: 1 MKTARRRS--RELAVQAVYQSLINRTAAPEIA-----------KNIREMPDFAKADEELF 47 Query: 70 RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISE 129 + G I L L+ I ++L EL P VII+E Sbjct: 48 NKLFFGTQTNAAEYIRQIRPLLDRDEK--DLNPIERAVLLTACHELSAMPETPYPVIINE 105 Query: 130 YVCIAHDFFYGDEPKFINAVLDKVS---RKEEIKR 161 + + F D KF+N +LDK++ R +E KR Sbjct: 106 AIEVTKTFGGTDGHKFVNGILDKLAAQIRPDEPKR 140 >gi|238926870|ref|ZP_04658630.1| transcription antitermination protein NusB [Selenomonas flueggei ATCC 43531] gi|238885402|gb|EEQ49040.1| transcription antitermination protein NusB [Selenomonas flueggei ATCC 43531] Length = 137 Score = 128 bits (322), Expect = 3e-28, Method: Composition-based stats. Identities = 27/141 (19%), Positives = 56/141 (39%), Gaps = 10/141 (7%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 R AR AA+ L+Q + + + D D DL + ++ G Sbjct: 3 RRHAREAALLTLFQREFDHDRPPIVAA--------GDLASDAVDGLTEKDLAYANRLVQG 54 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHS-VPVEVIISEYVCIA 134 + ID I C+ ++W R+ + +++R E+ + + I+E V +A Sbjct: 55 TCSVQPEIDAAI-ECMAKEWKLHRMAPVDRNLIRMAYYEMCYQEERIDPPIAINEAVELA 113 Query: 135 HDFFYGDEPKFINAVLDKVSR 155 + D +++N +L + + Sbjct: 114 KKYGSDDAGRYVNGILAALQK 134 >gi|15895354|ref|NP_348703.1| transcription antitermination protein NusB [Clostridium acetobutylicum ATCC 824] gi|22095961|sp|Q97HC8|NUSB_CLOAB RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|15025072|gb|AAK80043.1|AE007710_13 Transcription termination factor NusB [Clostridium acetobutylicum ATCC 824] gi|325509499|gb|ADZ21135.1| transcription antitermination protein NusB [Clostridium acetobutylicum EA 2018] Length = 135 Score = 128 bits (322), Expect = 3e-28, Method: Composition-based stats. Identities = 35/146 (23%), Positives = 65/146 (44%), Gaps = 12/146 (8%) Query: 15 RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74 R +R A++ L++I I S ++ I Y+ + +D E+ I+ Sbjct: 2 NRKKSREVAMKLLFEISINKNSISDTIEHYKENNEIEN-----------LDFEYIERILR 50 Query: 75 GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134 G+ + ++ID I ++KW SR+ I +ILR E+ +P +V +E V +A Sbjct: 51 GIDENMEYIDSKIEES-SKKWKISRISKINITILRMAAYEIFFEKDIPCKVSANEAVELA 109 Query: 135 HDFFYGDEPKFINAVLDKVSRKEEIK 160 + + F+N V+ + E K Sbjct: 110 KSYAEENSFSFVNGVIGNLINSSEEK 135 >gi|121634481|ref|YP_974726.1| transcription antitermination protein NusB [Neisseria meningitidis FAM18] gi|161869623|ref|YP_001598790.1| transcription antitermination protein NusB [Neisseria meningitidis 053442] gi|254804565|ref|YP_003082786.1| transcription termination factor nusB-family protein [Neisseria meningitidis alpha14] gi|166215703|sp|A1KSU6|NUSB_NEIMF RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|189035894|sp|A9M2W7|NUSB_NEIM0 RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|120866187|emb|CAM09927.1| putative RNA polymerase antitermination factor [Neisseria meningitidis FAM18] gi|161595176|gb|ABX72836.1| N utilization substance protein B [Neisseria meningitidis 053442] gi|254668107|emb|CBA04659.1| transcription termination factor nusB-family protein [Neisseria meningitidis alpha14] gi|254670531|emb|CBA06337.1| N utilization substance protein B [Neisseria meningitidis alpha153] gi|308388870|gb|ADO31190.1| putative RNA polymerase antitermination factor [Neisseria meningitidis alpha710] gi|325131863|gb|EGC54563.1| transcription antitermination factor NusB [Neisseria meningitidis M6190] gi|325135725|gb|EGC58337.1| transcription antitermination factor NusB [Neisseria meningitidis M0579] gi|325137913|gb|EGC60488.1| transcription antitermination factor NusB [Neisseria meningitidis ES14902] gi|325141944|gb|EGC64384.1| transcription antitermination factor NusB [Neisseria meningitidis 961-5945] gi|325197903|gb|ADY93359.1| transcription antitermination factor NusB [Neisseria meningitidis G2136] gi|325202521|gb|ADY97975.1| transcription antitermination factor NusB [Neisseria meningitidis M01-240149] gi|325207729|gb|ADZ03181.1| transcription antitermination factor NusB [Neisseria meningitidis NZ-05/33] Length = 141 Score = 128 bits (322), Expect = 3e-28, Method: Composition-based stats. Identities = 41/155 (26%), Positives = 59/155 (38%), Gaps = 18/155 (11%) Query: 10 LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF 69 +K + RR R AVQA+YQ I + EI + + D E F Sbjct: 1 MKTARRRS--RELAVQAVYQSLINRTAAPEIA-----------KNIREMPDFAKADEELF 47 Query: 70 RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISE 129 + G I L L+ I ++L EL P VII+E Sbjct: 48 NKLFFGTQTNAADYIQKIRPLLDRDEK--DLNPIERAVLLTACHELSAMPETPYPVIINE 105 Query: 130 YVCIAHDFFYGDEPKFINAVLDKVS---RKEEIKR 161 + + F D KF+N +LDK++ R +E KR Sbjct: 106 AIEVTKTFGGTDGHKFVNGILDKLAAQIRPDEPKR 140 >gi|53804263|ref|YP_114097.1| N utilization substance protein B [Methylococcus capsulatus str. Bath] gi|81681940|sp|Q607V0|NUSB_METCA RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|53758024|gb|AAU92315.1| N utilization substance protein B [Methylococcus capsulatus str. Bath] Length = 198 Score = 128 bits (322), Expect = 3e-28, Method: Composition-based stats. Identities = 41/188 (21%), Positives = 75/188 (39%), Gaps = 45/188 (23%) Query: 12 LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETY------------------------ 47 +S R +AR AAVQA+YQ + S +I ++ Sbjct: 1 MSLARTLARRAAVQAVYQWQLARDSLPDIERQFVEELQLAKSLYRRHAEGFELSPPEREQ 60 Query: 48 ---------RFCADTELDVESVYLH----------VDLEWFRVIIHGVMDRKQHIDLLIS 88 R E++ E V L V + +F+ ++HGV + +D ++ Sbjct: 61 LEELLEKFGRSQGTDEVEEEDVTLEQRASQCQVPDVQVGYFKELLHGVANNLALLDAALA 120 Query: 89 SCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINA 148 L +D + +ILR G E + P VI++E + +A +F +++N Sbjct: 121 KYLDR--PIDEVDPVERAILRIGCYEFMRRPETPYRVILNEAINLAKEFGAAQSYRYVNG 178 Query: 149 VLDKVSRK 156 +LD+V+ + Sbjct: 179 ILDRVAHE 186 >gi|15676581|ref|NP_273725.1| transcription antitermination protein NusB [Neisseria meningitidis MC58] gi|261377912|ref|ZP_05982485.1| transcription antitermination factor NusB [Neisseria cinerea ATCC 14685] gi|261401063|ref|ZP_05987188.1| transcription antitermination factor NusB [Neisseria lactamica ATCC 23970] gi|304388064|ref|ZP_07370193.1| transcription antitermination factor NusB [Neisseria meningitidis ATCC 13091] gi|22095969|sp|Q9K0D0|NUSB_NEIMB RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|7225910|gb|AAF41101.1| N utilization substance protein B [Neisseria meningitidis MC58] gi|254673604|emb|CBA09124.1| N utilization substance protein B [Neisseria meningitidis alpha275] gi|269145771|gb|EEZ72189.1| transcription antitermination factor NusB [Neisseria cinerea ATCC 14685] gi|269208952|gb|EEZ75407.1| transcription antitermination factor NusB [Neisseria lactamica ATCC 23970] gi|304337921|gb|EFM04061.1| transcription antitermination factor NusB [Neisseria meningitidis ATCC 13091] gi|316983655|gb|EFV62636.1| transcription antitermination factor NusB [Neisseria meningitidis H44/76] gi|325129787|gb|EGC52595.1| transcription antitermination factor NusB [Neisseria meningitidis OX99.30304] gi|325133802|gb|EGC56458.1| transcription antitermination factor NusB [Neisseria meningitidis M13399] gi|325139868|gb|EGC62399.1| transcription antitermination factor NusB [Neisseria meningitidis CU385] gi|325143929|gb|EGC66239.1| transcription antitermination factor NusB [Neisseria meningitidis M01-240013] gi|325200631|gb|ADY96086.1| transcription antitermination factor NusB [Neisseria meningitidis H44/76] gi|325203770|gb|ADY99223.1| transcription antitermination factor NusB [Neisseria meningitidis M01-240355] gi|325206473|gb|ADZ01926.1| transcription antitermination factor NusB [Neisseria meningitidis M04-240196] Length = 141 Score = 128 bits (322), Expect = 3e-28, Method: Composition-based stats. Identities = 42/155 (27%), Positives = 60/155 (38%), Gaps = 18/155 (11%) Query: 10 LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF 69 +K + RR R AVQA+YQ I + EI + S + D E F Sbjct: 1 MKTARRRS--RELAVQAVYQSLINRTAAPEIA-----------KNIREMSDFAKADEELF 47 Query: 70 RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISE 129 + G I L L+ I ++L EL P VII+E Sbjct: 48 NKLFFGTQTNAAEYIRQIRPLLDRDEK--DLNPIERAVLLTACHELSAMPETPYPVIINE 105 Query: 130 YVCIAHDFFYGDEPKFINAVLDKVS---RKEEIKR 161 + + F D KF+N +LDK++ R +E KR Sbjct: 106 AIEVTKTFGGTDGHKFVNGILDKLAAQIRPDEPKR 140 >gi|319442128|ref|ZP_07991284.1| transcription antitermination protein NusB [Corynebacterium variabile DSM 44702] Length = 190 Score = 128 bits (322), Expect = 3e-28, Method: Composition-based stats. Identities = 31/137 (22%), Positives = 62/137 (45%), Gaps = 8/137 (5%) Query: 24 VQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHI 83 V L++ + EI+ + E+ + ++ I+ GV + I Sbjct: 21 VDMLFEAEFRDIDPVEIVEDRRELS-------RDEANQVAPVNDYTAQIVGGVAENLDGI 73 Query: 84 DLLISSCLTEKWSFSRLDMILCSILRAGVLELIE-CHSVPVEVIISEYVCIAHDFFYGDE 142 D I+ L+ +W+ RL + ++LR EL+ +P +V + E + +A ++ + Sbjct: 74 DGAIAGHLSSEWTLDRLPAVDRAVLRVSAWELLHNHDEIPEKVAVDEGIGLAKEYGHDKA 133 Query: 143 PKFINAVLDKVSRKEEI 159 P +++AVLD +SR I Sbjct: 134 PGYVHAVLDGISRSRRI 150 >gi|59800707|ref|YP_207419.1| transcription antitermination protein NusB [Neisseria gonorrhoeae FA 1090] gi|194097970|ref|YP_002001018.1| transcription antitermination protein NusB [Neisseria gonorrhoeae NCCP11945] gi|239998442|ref|ZP_04718366.1| transcription antitermination protein NusB [Neisseria gonorrhoeae 35/02] gi|240080146|ref|ZP_04724689.1| transcription antitermination protein NusB [Neisseria gonorrhoeae FA19] gi|240112360|ref|ZP_04726850.1| transcription antitermination protein NusB [Neisseria gonorrhoeae MS11] gi|240115100|ref|ZP_04729162.1| transcription antitermination protein NusB [Neisseria gonorrhoeae PID18] gi|240117383|ref|ZP_04731445.1| transcription antitermination protein NusB [Neisseria gonorrhoeae PID1] gi|240122940|ref|ZP_04735896.1| transcription antitermination protein NusB [Neisseria gonorrhoeae PID332] gi|240125192|ref|ZP_04738078.1| transcription antitermination protein NusB [Neisseria gonorrhoeae SK-92-679] gi|240127648|ref|ZP_04740309.1| transcription antitermination protein NusB [Neisseria gonorrhoeae SK-93-1035] gi|254493161|ref|ZP_05106332.1| transcription antitermination protein NusB [Neisseria gonorrhoeae 1291] gi|260441085|ref|ZP_05794901.1| transcription antitermination protein NusB [Neisseria gonorrhoeae DGI2] gi|268594303|ref|ZP_06128470.1| transcription antitermination protein NusB [Neisseria gonorrhoeae 35/02] gi|268596297|ref|ZP_06130464.1| transcription antitermination protein NusB [Neisseria gonorrhoeae FA19] gi|268598417|ref|ZP_06132584.1| transcription antitermination protein NusB [Neisseria gonorrhoeae MS11] gi|268600773|ref|ZP_06134940.1| transcription antitermination protein NusB [Neisseria gonorrhoeae PID18] gi|268603079|ref|ZP_06137246.1| transcription antitermination protein NusB [Neisseria gonorrhoeae PID1] gi|268681559|ref|ZP_06148421.1| transcription antitermination protein NusB [Neisseria gonorrhoeae PID332] gi|268683788|ref|ZP_06150650.1| transcription antitermination protein NusB [Neisseria gonorrhoeae SK-92-679] gi|268686028|ref|ZP_06152890.1| transcription antitermination protein NusB [Neisseria gonorrhoeae SK-93-1035] gi|291044417|ref|ZP_06570126.1| transcription antitermination protein NusB [Neisseria gonorrhoeae DGI2] gi|293399595|ref|ZP_06643748.1| transcription antitermination factor NusB [Neisseria gonorrhoeae F62] gi|75432566|sp|Q5F9Y0|NUSB_NEIG1 RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|238690178|sp|B4RJT3|NUSB_NEIG2 RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|59717602|gb|AAW89007.1| putative transcription termination factor [Neisseria gonorrhoeae FA 1090] gi|193933260|gb|ACF29084.1| transcription antitermination protein NusB [Neisseria gonorrhoeae NCCP11945] gi|226512201|gb|EEH61546.1| transcription antitermination protein NusB [Neisseria gonorrhoeae 1291] gi|268547692|gb|EEZ43110.1| transcription antitermination protein NusB [Neisseria gonorrhoeae 35/02] gi|268550085|gb|EEZ45104.1| transcription antitermination protein NusB [Neisseria gonorrhoeae FA19] gi|268582548|gb|EEZ47224.1| transcription antitermination protein NusB [Neisseria gonorrhoeae MS11] gi|268584904|gb|EEZ49580.1| transcription antitermination protein NusB [Neisseria gonorrhoeae PID18] gi|268587210|gb|EEZ51886.1| transcription antitermination protein NusB [Neisseria gonorrhoeae PID1] gi|268621843|gb|EEZ54243.1| transcription antitermination protein NusB [Neisseria gonorrhoeae PID332] gi|268624072|gb|EEZ56472.1| transcription antitermination protein NusB [Neisseria gonorrhoeae SK-92-679] gi|268626312|gb|EEZ58712.1| transcription antitermination protein NusB [Neisseria gonorrhoeae SK-93-1035] gi|291011311|gb|EFE03307.1| transcription antitermination protein NusB [Neisseria gonorrhoeae DGI2] gi|291610164|gb|EFF39286.1| transcription antitermination factor NusB [Neisseria gonorrhoeae F62] gi|317163726|gb|ADV07267.1| transcription antitermination protein NusB [Neisseria gonorrhoeae TCDC-NG08107] Length = 141 Score = 128 bits (322), Expect = 3e-28, Method: Composition-based stats. Identities = 42/155 (27%), Positives = 60/155 (38%), Gaps = 18/155 (11%) Query: 10 LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF 69 +K + RR R AVQA+YQ I + EI + S + D E F Sbjct: 1 MKTARRRS--RELAVQAVYQSLINRTAAPEIA-----------KNIREMSDFAKADEELF 47 Query: 70 RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISE 129 + G I L L+ I ++L EL P VII+E Sbjct: 48 NKLFFGTQTNAADYIQKIRPLLDRDEK--DLNPIERAVLLTACHELSAMPETPYPVIINE 105 Query: 130 YVCIAHDFFYGDEPKFINAVLDKVS---RKEEIKR 161 + + F D KF+N +LDK++ R +E KR Sbjct: 106 AIEVTKTFGGTDGHKFVNGILDKLAAQIRPDEPKR 140 >gi|295090868|emb|CBK76975.1| transcription antitermination factor NusB [Clostridium cf. saccharolyticum K10] Length = 147 Score = 128 bits (322), Expect = 3e-28, Method: Composition-based stats. Identities = 35/146 (23%), Positives = 61/146 (41%), Gaps = 8/146 (5%) Query: 16 RGIARLAAVQALYQIDIIGC-STTEIISEYETYRFCADTELDVESVYLHV------DLEW 68 R R + L+ D T E I +Y T D D +H D + Sbjct: 3 RRELREHCFKLLFCADFYPEGETKEQIEQYFTEPREDDYTSDGVYELIHCPELDVYDSGY 62 Query: 69 FRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIIS 128 + + V+++ +D I+ + W+ R+ + +ILR + E+ VP +V I+ Sbjct: 63 VKNKVEKVLEKLTELDTAINET-AKGWTTRRMGKVELTILRLALFEIRYDEEVPDKVAIN 121 Query: 129 EYVCIAHDFFYGDEPKFINAVLDKVS 154 E V +A F + P F+N +L K+ Sbjct: 122 EAVELAKKFGGDESPAFVNGILAKLV 147 >gi|307704282|ref|ZP_07641201.1| transcription antitermination factor NusB [Streptococcus mitis SK597] gi|307622193|gb|EFO01211.1| transcription antitermination factor NusB [Streptococcus mitis SK597] Length = 141 Score = 128 bits (322), Expect = 3e-28, Method: Composition-based stats. Identities = 31/143 (21%), Positives = 59/143 (41%), Gaps = 11/143 (7%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 R R A QAL ++ + E + D ++ + + ++ G Sbjct: 9 RRELRKCAFQALMSLEFG--TDMETACHFAYTHDREDADVQIP--------AFLLNLVSG 58 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135 V +K +D I+ L W RL ++ ++LR G+ E+ P V ++E + +A Sbjct: 59 VQAQKDELDKQINQHLKSGWIVERLTLVEKNLLRLGIFEITSF-DTPQLVAVNEAIELAK 117 Query: 136 DFFYGDEPKFINAVLDKVSRKEE 158 +F +FIN +L + +E Sbjct: 118 NFSDQKSARFINGLLSQFVTEEN 140 >gi|315634386|ref|ZP_07889673.1| transcription termination/antitermination factor NusB [Aggregatibacter segnis ATCC 33393] gi|315476976|gb|EFU67721.1| transcription termination/antitermination factor NusB [Aggregatibacter segnis ATCC 33393] Length = 102 Score = 127 bits (321), Expect = 3e-28, Method: Composition-based stats. Identities = 29/97 (29%), Positives = 47/97 (48%), Gaps = 2/97 (2%) Query: 58 ESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIE 117 E VD +FR + ++ + ++ + L LD I +ILR V EL Sbjct: 3 EQDMKGVDTPYFRKLFRQTVENVEAVERTMQGYLDRG--LEELDPIEKAILRLAVYELQF 60 Query: 118 CHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVS 154 VP +V+I+E + +A F + K+IN VLDK++ Sbjct: 61 EADVPYKVVINEAIEVAKVFGADESHKYINGVLDKIA 97 >gi|283797531|ref|ZP_06346684.1| transcription antitermination factor NusB [Clostridium sp. M62/1] gi|291074900|gb|EFE12264.1| transcription antitermination factor NusB [Clostridium sp. M62/1] Length = 147 Score = 127 bits (321), Expect = 3e-28, Method: Composition-based stats. Identities = 36/146 (24%), Positives = 61/146 (41%), Gaps = 8/146 (5%) Query: 16 RGIARLAAVQALYQIDIIGC-STTEIISEYETYRFCADTELDVESVYLHV------DLEW 68 R R + L+ D T E I +Y T D D +H D + Sbjct: 3 RRELREHCFKLLFCADFYPEGETKEQIEQYFTEPREDDYTSDGVYELIHCPELDVYDSGY 62 Query: 69 FRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIIS 128 + + V+++ +D I+ E W+ R+ + +ILR + E+ VP +V I+ Sbjct: 63 VKNKVEKVLEKLTELDTAINET-AEGWTTRRMGKVELTILRLALFEIRYDEEVPDKVAIN 121 Query: 129 EYVCIAHDFFYGDEPKFINAVLDKVS 154 E V +A F + P F+N +L K+ Sbjct: 122 EAVELAKKFGGDESPAFVNGILAKLV 147 >gi|262202262|ref|YP_003273470.1| transcription antitermination factor NusB [Gordonia bronchialis DSM 43247] gi|262085609|gb|ACY21577.1| transcription antitermination factor NusB [Gordonia bronchialis DSM 43247] Length = 163 Score = 127 bits (321), Expect = 4e-28, Method: Composition-based stats. Identities = 39/145 (26%), Positives = 67/145 (46%), Gaps = 9/145 (6%) Query: 10 LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF 69 +K R AR AV L++ + S ++++E ++ + ++ Sbjct: 1 MKQPGTRHKARRRAVDILFEAEAKQVSPAQLVAERRELVRSDES--------VGAIHDYT 52 Query: 70 RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISE 129 +I G+ D ++ ID +ISS L +W+ RL + +ILR EL V VI+ E Sbjct: 53 ARVIEGLADDQEQIDSVISSHL-REWTLPRLPAVDRAILRLATWELFNSVDVDTVVIVDE 111 Query: 130 YVCIAHDFFYGDEPKFINAVLDKVS 154 V +A + D P F+N VL K++ Sbjct: 112 AVELAKELSTDDSPAFVNGVLAKIA 136 >gi|227499084|ref|ZP_03929221.1| NusB antitermination factor [Acidaminococcus sp. D21] gi|226904533|gb|EEH90451.1| NusB antitermination factor [Acidaminococcus sp. D21] Length = 140 Score = 127 bits (321), Expect = 4e-28, Method: Composition-based stats. Identities = 31/143 (21%), Positives = 60/143 (41%), Gaps = 11/143 (7%) Query: 16 RGIARLAAVQALYQIDII-GCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74 R AR A+++L+ +D S + + E + D + ++ Sbjct: 3 RREARTLAMKSLFSLDFTTDVSPLDTVKALL--------EDEDTPALPKDDENYAAALVT 54 Query: 75 GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECH-SVPVEVIISEYVCI 133 G + + ID ++ + L+++W R+ + ++LR E+ + + ISE V I Sbjct: 55 GTREHLEAIDSVLDT-LSDEWKVKRMAGVDRNLLRMAAFEMYFSPQKIAPAIAISEAVEI 113 Query: 134 AHDFFYGDEPKFINAVLDKVSRK 156 A + D P FIN +L + R Sbjct: 114 AKIYGGDDSPHFINGLLGTLVRN 136 >gi|296111669|ref|YP_003622051.1| transcription antitermination protein NusB [Leuconostoc kimchii IMSNU 11154] gi|295833201|gb|ADG41082.1| transcription antitermination protein NusB [Leuconostoc kimchii IMSNU 11154] Length = 138 Score = 127 bits (321), Expect = 4e-28, Method: Composition-based stats. Identities = 35/139 (25%), Positives = 62/139 (44%), Gaps = 14/139 (10%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 R +R AA Q L+ ++ + I Y+ D + ++ +++G Sbjct: 6 RHESRQAAFQVLFALE-KDPQSNNIDKLYDIVLAGKDYD------------DYLPRLVNG 52 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135 ++ K +D I++ L + W+ +RL+ ILR V EL+ VP +V I E + + Sbjct: 53 ILGTKTELDEQIAAHLADGWAINRLNKADLIILRLAVYELLNNL-VPYKVAIDEALILTK 111 Query: 136 DFFYGDEPKFINAVLDKVS 154 F D KF+N VL + Sbjct: 112 TFSDEDSRKFVNGVLKNFA 130 >gi|331002443|ref|ZP_08325961.1| transcription antitermination factor NusB [Lachnospiraceae oral taxon 107 str. F0167] gi|330410259|gb|EGG89693.1| transcription antitermination factor NusB [Lachnospiraceae oral taxon 107 str. F0167] Length = 146 Score = 127 bits (321), Expect = 4e-28, Method: Composition-based stats. Identities = 41/147 (27%), Positives = 68/147 (46%), Gaps = 8/147 (5%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFC-----ADTELDVESVYLHVDLEWFR 70 R + R + L +D EI + + Y D EL ++ + D+E+ + Sbjct: 3 RHLLREHCFKILLGLDFYAD--EEIKVQTDNYFESPSLEDEDDELIHDANFSDGDIEYIK 60 Query: 71 VIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEY 130 VMD K ID +IS L++ W R+ + +ILR + E+ +PV V I+E Sbjct: 61 SKAMLVMDNKSEIDKIISE-LSQGWKLERIGRVERNILRLAIAEMKYDDDIPVSVAINEA 119 Query: 131 VCIAHDFFYGDEPKFINAVLDKVSRKE 157 V +A + + F+NA+L KV +E Sbjct: 120 VELAKAYGRDESYSFVNAILSKVGIEE 146 >gi|154498049|ref|ZP_02036427.1| hypothetical protein BACCAP_02030 [Bacteroides capillosus ATCC 29799] gi|150273039|gb|EDN00196.1| hypothetical protein BACCAP_02030 [Bacteroides capillosus ATCC 29799] Length = 223 Score = 127 bits (321), Expect = 4e-28, Method: Composition-based stats. Identities = 37/163 (22%), Positives = 66/163 (40%), Gaps = 8/163 (4%) Query: 2 TIQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISE---YETYRFCADTELDVE 58 T +D +++ R AR AV +++ + E++ T+ + E Sbjct: 40 TARDGGRNM----TRTNAREIAVHLTFELSFTNQTADELLDTALTRATFALIGEEEPLYA 95 Query: 59 SVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIEC 118 E+ ++ GV +D IS W+FSR+ I +++R + E++ Sbjct: 96 EYPNAKQREYISELVRGVYFHCPELDDYISRY-AIGWTFSRIPRIAVAVMRVAMYEILYM 154 Query: 119 HSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKR 161 VP I+E + IA + + FIN +L RKE I Sbjct: 155 QDVPNAAAINEALEIAKGYETPEVVSFINGILGSFVRKESIPE 197 >gi|253578527|ref|ZP_04855799.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA] gi|251850845|gb|EES78803.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA] Length = 140 Score = 127 bits (321), Expect = 4e-28, Method: Composition-based stats. Identities = 36/148 (24%), Positives = 61/148 (41%), Gaps = 10/148 (6%) Query: 15 RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74 RR R + L+ + ++ E +SE + F D D E+ Sbjct: 2 RRREQREHIFKLLF---MTEFNSEEEMSEQLSLYF------DTLEELSEKDQEYMSRKYR 52 Query: 75 GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134 V+++ ID L++ + W R+ + + LR V EL VP V I+E V +A Sbjct: 53 HVLEKLDEIDALLNET-SNGWKTKRMSRVDLTALRLAVYELKYDKDVPTGVAINEAVELA 111 Query: 135 HDFFYGDEPKFINAVLDKVSRKEEIKRS 162 F F+N +L K++ E ++S Sbjct: 112 KRFGGETSGSFVNGILGKIANSESEEKS 139 >gi|34556732|ref|NP_906547.1| transcription antitermination protein NusB [Wolinella succinogenes DSM 1740] gi|39931695|sp|Q7MAE9|NUSB_WOLSU RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|34482446|emb|CAE09447.1| TRANSCRIPTION TERMINATION PROTEIN [Wolinella succinogenes] Length = 135 Score = 127 bits (321), Expect = 4e-28, Method: Composition-based stats. Identities = 38/138 (27%), Positives = 58/138 (42%), Gaps = 13/138 (9%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 R AR A V LY D+ + E + + + E+ + G Sbjct: 4 RAQAREAVVSLLYAYDMGNTEIRKFAIELLEEKRIKNRQQ-----------EFALELFDG 52 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135 + ID I L E W FSR+ + +ILR G E++ V VII+E V ++ Sbjct: 53 TIAHLGEIDEEIKKHLKE-WDFSRIGDMERAILRLGTFEIVYSG-VDRAVIINEAVELSK 110 Query: 136 DFFYGDEPKFINAVLDKV 153 F + P+F+N VLD + Sbjct: 111 TFGNDNSPRFVNGVLDAL 128 >gi|295396131|ref|ZP_06806314.1| transcription antitermination factor NusB [Brevibacterium mcbrellneri ATCC 49030] gi|294971072|gb|EFG46964.1| transcription antitermination factor NusB [Brevibacterium mcbrellneri ATCC 49030] Length = 134 Score = 127 bits (320), Expect = 5e-28, Method: Composition-based stats. Identities = 34/135 (25%), Positives = 65/135 (48%), Gaps = 14/135 (10%) Query: 24 VQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHI 83 ++ L++ + E+I E D E + + R I+ GV+ + + Sbjct: 12 LELLFEAEARNLPEAELIKLREN-----DEEYPL--------RPYSREIVDGVVTHRAQL 58 Query: 84 DLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEP 143 D LIS+ W+ R+ + ++LR G+ E++ V V I E V +A ++ D P Sbjct: 59 DELISTY-AHGWTLERMPRVDRAVLRIGLWEILYNDEVDDPVAIDEAVTLAKEYSTDDSP 117 Query: 144 KFINAVLDKVSRKEE 158 F+NA+LD++S+ ++ Sbjct: 118 AFVNALLDRISKLKD 132 >gi|242309730|ref|ZP_04808885.1| transcription antitermination protein NusB [Helicobacter pullorum MIT 98-5489] gi|239523731|gb|EEQ63597.1| transcription antitermination protein NusB [Helicobacter pullorum MIT 98-5489] Length = 148 Score = 127 bits (320), Expect = 5e-28, Method: Composition-based stats. Identities = 42/143 (29%), Positives = 67/143 (46%), Gaps = 13/143 (9%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 R AR VQ LY S E I ++ E+ E + E+ + G Sbjct: 4 RSHAREVVVQLLYAY----GSGNEKIGKFAD-------EIFEEQKIKNNQKEFATSLFEG 52 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135 V+ + +DL IS L + W FS++ + +ILR GV E+I H + + I+E + +A Sbjct: 53 VIANLEALDLRISHQL-KDWDFSKIGDMEKAILRLGVYEIIFNH-LSKAIAINEALELAK 110 Query: 136 DFFYGDEPKFINAVLDKVSRKEE 158 F + KFIN VLD +++ + Sbjct: 111 SFGNENSAKFINGVLDGIAKNLQ 133 >gi|312880056|ref|ZP_07739856.1| NusB antitermination factor [Aminomonas paucivorans DSM 12260] gi|310783347|gb|EFQ23745.1| NusB antitermination factor [Aminomonas paucivorans DSM 12260] Length = 156 Score = 127 bits (320), Expect = 5e-28, Method: Composition-based stats. Identities = 34/152 (22%), Positives = 65/152 (42%), Gaps = 14/152 (9%) Query: 12 LSHRRGIARLAAVQALYQIDIIG-CSTTEIISEYETYRFCADTELDVESVYLHVDLEWFR 70 + +R +R A+Q Y++D+ S ++++ + + ++ Sbjct: 6 MPQKRRRSREIALQLGYEMDVRERLSVEDVLAAFPLEEEDPEI------------RDYAC 53 Query: 71 VIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEY 130 ++ + K ID L+ L W R+ + + +R +LE + VP+ V ISE Sbjct: 54 ALVSALDRHKGAIDELLREQLV-GWRPERMVAVDRAAIRLALLEGVFEKLVPLAVAISEA 112 Query: 131 VCIAHDFFYGDEPKFINAVLDKVSRKEEIKRS 162 V +A F D +F+N VL ++ R E K Sbjct: 113 VELAKTFGTEDSGRFVNGVLGRIVRSLEPKAG 144 >gi|332185633|ref|ZP_08387381.1| transcription antitermination factor NusB [Sphingomonas sp. S17] gi|332014611|gb|EGI56668.1| transcription antitermination factor NusB [Sphingomonas sp. S17] Length = 151 Score = 127 bits (320), Expect = 5e-28, Method: Composition-based stats. Identities = 48/128 (37%), Positives = 70/128 (54%), Gaps = 3/128 (2%) Query: 28 YQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLI 87 YQ D+ ++ E+ +R A E + Y D+++F I+ GV R IDL+I Sbjct: 23 YQHDMEKTPLAALLHEFHNHRIGATIE---DVEYADADIDFFDDIVKGVHARLGEIDLMI 79 Query: 88 SSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFIN 147 L W+ SRLD + +ILRAG ELI VPV +ISEYV +AH F+ E F+N Sbjct: 80 EGKLASGWTLSRLDRPMKAILRAGTYELIARRDVPVGAVISEYVDVAHAFYEKRESGFVN 139 Query: 148 AVLDKVSR 155 +LD +++ Sbjct: 140 GLLDAIAK 147 >gi|289450308|ref|YP_003475512.1| transcription antitermination factor NusB [Clostridiales genomosp. BVAB3 str. UPII9-5] gi|289184855|gb|ADC91280.1| transcription antitermination factor NusB [Clostridiales genomosp. BVAB3 str. UPII9-5] Length = 151 Score = 127 bits (320), Expect = 6e-28, Method: Composition-based stats. Identities = 40/144 (27%), Positives = 69/144 (47%), Gaps = 9/144 (6%) Query: 15 RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74 +R AR A + LYQI + T +I ++ E + E + D+ + ++ Sbjct: 2 KRREAREQAFKFLYQIQVQ---TDDIPAQREYFLRS----CRDEFGFEDADISYITGVVD 54 Query: 75 GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134 GV+ D IS+CL +KW+ RL + +ILR + E+ H V +I +E V +A Sbjct: 55 GVIKETAEFDRQISTCL-KKWTVDRLPCVDLAILRLALYEIKYEH-VAFSIIANEAVLLA 112 Query: 135 HDFFYGDEPKFINAVLDKVSRKEE 158 + + +IN +L K+ KE+ Sbjct: 113 KKYSTEESRSYINGILGKLMPKED 136 >gi|160938277|ref|ZP_02085632.1| hypothetical protein CLOBOL_03173 [Clostridium bolteae ATCC BAA-613] gi|158438650|gb|EDP16407.1| hypothetical protein CLOBOL_03173 [Clostridium bolteae ATCC BAA-613] Length = 272 Score = 127 bits (320), Expect = 6e-28, Method: Composition-based stats. Identities = 30/147 (20%), Positives = 59/147 (40%), Gaps = 9/147 (6%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVY--------LHVDLE 67 R R + L+ D I + ++ + ++D + D E Sbjct: 52 RRELREHCFKMLFSADFYPTQEEAIAQLGQYFQSPEEDDVDESGILQVLHKVELKEADSE 111 Query: 68 WFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVII 127 + + +M++ ID ++ W R+ + +ILR + E++ ++P +V I Sbjct: 112 YLQARTANIMEKIPEIDEKLNQA-AAGWKTKRMGKVELTILRLALYEMLHDDAIPEKVSI 170 Query: 128 SEYVCIAHDFFYGDEPKFINAVLDKVS 154 +E V +A F D P F+N +L K Sbjct: 171 NEAVELAKKFGGNDSPSFVNGILAKFV 197 >gi|307710564|ref|ZP_07646999.1| transcription antitermination factor NusB [Streptococcus mitis SK564] gi|307618672|gb|EFN97813.1| transcription antitermination factor NusB [Streptococcus mitis SK564] Length = 141 Score = 127 bits (319), Expect = 6e-28, Method: Composition-based stats. Identities = 33/143 (23%), Positives = 61/143 (42%), Gaps = 11/143 (7%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 R R A QAL ++ T Y R AD ++ + ++ G Sbjct: 9 RRELRKCAFQALLSLEFGTDMETACRFAYTHDREDADVQIP----------AFLLNLVSG 58 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135 + +K+ +D I+ L W+ RL ++ ++LR G+ E+ P V ++E + +A Sbjct: 59 IQAQKEELDKQINQHLKSGWTVERLTLVEKNLLRLGIFEITSF-DTPQLVAVNEAIELAK 117 Query: 136 DFFYGDEPKFINAVLDKVSRKEE 158 +F +FIN +L + +E Sbjct: 118 NFSDQKSARFINGLLSQFVTEEN 140 >gi|281413741|ref|ZP_06245483.1| transcription antitermination factor NusB [Micrococcus luteus NCTC 2665] Length = 125 Score = 127 bits (319), Expect = 6e-28, Method: Composition-based stats. Identities = 34/130 (26%), Positives = 64/130 (49%), Gaps = 14/130 (10%) Query: 24 VQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHI 83 ++ L++ + G + +E I T R D +++ + + ++ GV+ ++ + Sbjct: 1 MEILFEAEQRGSTVSEGIR---TRRESTDLQVN----------AYTQRLVEGVIADQERL 47 Query: 84 DLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEP 143 D +SS + WS R+ + +ILR G EL+ VP V ISE V +A D P Sbjct: 48 DEALSSY-SRGWSLDRMPAVDRAILRVGAWELLFQDDVPDAVAISEAVALAAQLSTDDSP 106 Query: 144 KFINAVLDKV 153 +F+N +L ++ Sbjct: 107 EFVNGLLGRL 116 >gi|322436555|ref|YP_004218767.1| NusB antitermination factor [Acidobacterium sp. MP5ACTX9] gi|321164282|gb|ADW69987.1| NusB antitermination factor [Acidobacterium sp. MP5ACTX9] Length = 140 Score = 127 bits (319), Expect = 6e-28, Method: Composition-based stats. Identities = 31/148 (20%), Positives = 62/148 (41%), Gaps = 11/148 (7%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 R +R +Q L+Q D+ + ++ + + D E + + Sbjct: 4 RRKSRELTMQMLFQGDLGKQTPEQVTKLFWSSVTDVDEETRG----------FAEDLYRI 53 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135 R ID LI ++ W R+ ++ ++LR+ + E++ P ++I+E + +A Sbjct: 54 ATSRGTEIDALIEEH-SQNWRLERMPVVDRNLLRSAIAEMLGFPKTPHAIVINESLEVAR 112 Query: 136 DFFYGDEPKFINAVLDKVSRKEEIKRSG 163 + + F+N VLD V+R R G Sbjct: 113 RYAAPESIHFLNGVLDAVARDLLKARLG 140 >gi|299139121|ref|ZP_07032297.1| NusB antitermination factor [Acidobacterium sp. MP5ACTX8] gi|298598801|gb|EFI54963.1| NusB antitermination factor [Acidobacterium sp. MP5ACTX8] Length = 141 Score = 127 bits (319), Expect = 7e-28, Method: Composition-based stats. Identities = 34/141 (24%), Positives = 59/141 (41%), Gaps = 11/141 (7%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 R +R A+Q L+Q D+ E+ + R D E + + Sbjct: 4 RRKSRELAMQMLFQGDLGKQKPEEVEELFWASREDVDDETRG----------FADDLHRL 53 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135 R+ +D LI + W R+ ++ ++LR V E++ P VII+E + IA Sbjct: 54 ATQREDEVDALIQKH-AQNWRLERMPVVDRNLLRTAVAEMVGYPKTPAAVIINETLEIAR 112 Query: 136 DFFYGDEPKFINAVLDKVSRK 156 + + F+N VLD + R+ Sbjct: 113 RYAAPESIHFLNGVLDAIGRE 133 >gi|303232700|ref|ZP_07319385.1| transcription antitermination factor NusB [Atopobium vaginae PB189-T1-4] gi|302481186|gb|EFL44261.1| transcription antitermination factor NusB [Atopobium vaginae PB189-T1-4] Length = 192 Score = 127 bits (319), Expect = 7e-28, Method: Composition-based stats. Identities = 37/147 (25%), Positives = 66/147 (44%), Gaps = 14/147 (9%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 R AR A+Q L+Q + +II+ + + L+ E+ R + G Sbjct: 10 RTRARSHALQLLFQAESRSMRVADIIN---AHYLITEGPLE----------EFARTLALG 56 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135 + +D LI+ T W+ +RL + +I+R + E++ V V V I+E+V +A Sbjct: 57 ADAVRDKLDALIADTAT-NWNVTRLLSVDRNIIRLALFEMLHVDDVDVAVTINEFVILAK 115 Query: 136 DFFYGDEPKFINAVLDKVSRKEEIKRS 162 + D F+N VL +V+R+ Sbjct: 116 AYGTDDSAAFVNGVLGQVARRLSAGED 142 >gi|212716890|ref|ZP_03325018.1| hypothetical protein BIFCAT_01834 [Bifidobacterium catenulatum DSM 16992] gi|225350765|ref|ZP_03741788.1| hypothetical protein BIFPSEUDO_02334 [Bifidobacterium pseudocatenulatum DSM 20438] gi|212660175|gb|EEB20750.1| hypothetical protein BIFCAT_01834 [Bifidobacterium catenulatum DSM 16992] gi|225158221|gb|EEG71463.1| hypothetical protein BIFPSEUDO_02334 [Bifidobacterium pseudocatenulatum DSM 20438] Length = 147 Score = 126 bits (318), Expect = 8e-28, Method: Composition-based stats. Identities = 31/135 (22%), Positives = 53/135 (39%), Gaps = 12/135 (8%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 R AR A+ LY+ D G +++E + E+ I+ G Sbjct: 3 RSTARKRALNTLYEADEKGQDILSLLAERIE-----------QPGAQTPLPEYAIEIVRG 51 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135 V + ID + + W R+ ++ +ILR E++ VP V I E + +A Sbjct: 52 VAEHIAAIDSTLDEH-STGWKVKRMGVVDRNILRIAAWEIMFNDDVPNMVAIDEALGLAK 110 Query: 136 DFFYGDEPKFINAVL 150 + P FI+ +L Sbjct: 111 TLCDDESPAFIHGLL 125 >gi|310658653|ref|YP_003936374.1| transcription antitermination protein [Clostridium sticklandii DSM 519] gi|308825431|emb|CBH21469.1| transcription antitermination protein [Clostridium sticklandii] Length = 133 Score = 126 bits (318), Expect = 8e-28, Method: Composition-based stats. Identities = 30/144 (20%), Positives = 63/144 (43%), Gaps = 12/144 (8%) Query: 15 RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74 +R R AAV+ Y++DI + + E+ + + + + + Sbjct: 2 KRKELREAAVKLFYEMDIQKTFEHKFYKNFLA-----------ENELVALKDNYLKEVFD 50 Query: 75 GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134 + + +ID +I + W R+ + SILR + E++ +P +V I+E + +A Sbjct: 51 NFLLNRDNIDDIIQKS-STSWDIKRIAKVDLSILRVAITEILYLSDIPDKVSINEAIDLA 109 Query: 135 HDFFYGDEPKFINAVLDKVSRKEE 158 + + KF+N +L K+ + E Sbjct: 110 KKYGDENSYKFVNGLLGKIVKNEN 133 >gi|306820223|ref|ZP_07453865.1| transcription antitermination factor NusB [Eubacterium yurii subsp. margaretiae ATCC 43715] gi|304551720|gb|EFM39669.1| transcription antitermination factor NusB [Eubacterium yurii subsp. margaretiae ATCC 43715] Length = 212 Score = 126 bits (318), Expect = 8e-28, Method: Composition-based stats. Identities = 45/202 (22%), Positives = 75/202 (37%), Gaps = 53/202 (26%) Query: 1 MTIQDNKKDLKLSHRRGIARLAAVQALYQIDIIGC------------------------- 35 M + +NKK+ +S R R +Q LYQ+DI Sbjct: 1 MNVDENKKNPNMSLSRKRQRQNVMQMLYQMDIQDNFTKSATINIDKKLKDEKYEISLDNC 60 Query: 36 ----------------STTEIISEYETYRFCADTEL-----------DVESVYLHVDLEW 68 S +I +E F +L E++ D+ + Sbjct: 61 NNIENIEHVKKLIADFSGEKIPENFELGDFIEQDDLITYEVTDTYSYSQENLKNFTDIGY 120 Query: 69 FRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIIS 128 ++ I +D K ID IS L+EKW+ RL I +++R + E+ +P +V I+ Sbjct: 121 IKLFISSFLDNKDLIDSEISQVLSEKWTVKRLSKIDLALIRTAITEIKY-LDIPYKVAIN 179 Query: 129 EYVCIAHDFFYGDEPKFINAVL 150 E + +A + FIN +L Sbjct: 180 EALELAKKYSDEKSSSFINGIL 201 >gi|224531581|ref|ZP_03672213.1| transcription antitermination factor NusB [Borrelia valaisiana VS116] gi|224511046|gb|EEF81452.1| transcription antitermination factor NusB [Borrelia valaisiana VS116] Length = 145 Score = 126 bits (318), Expect = 8e-28, Method: Composition-based stats. Identities = 39/143 (27%), Positives = 67/143 (46%), Gaps = 9/143 (6%) Query: 17 GIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGV 76 R+ A Q +Y IDI + +I + D LD+E+ + ++ +++G Sbjct: 5 HEVRVLAFQKIYSIDINQSAMDDIFDIFN----IEDKGLDIENESIK---SFYSSLVNGT 57 Query: 77 MDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECH-SVPVEVIISEYVCIAH 135 + +HID LI ++ WS R+D + +ILR GV L + +I E + IA Sbjct: 58 FNNLEHIDNLIRD-ISLNWSLDRMDKVDLAILRMGVYSLKFQNFENSKRAVIDEAILIAK 116 Query: 136 DFFYGDEPKFINAVLDKVSRKEE 158 + + KFIN +LD + + E Sbjct: 117 KYGSKNSYKFINGILDALLKNME 139 >gi|325295064|ref|YP_004281578.1| NusB antitermination factor [Desulfurobacterium thermolithotrophum DSM 11699] gi|325065512|gb|ADY73519.1| NusB antitermination factor [Desulfurobacterium thermolithotrophum DSM 11699] Length = 140 Score = 126 bits (318), Expect = 9e-28, Method: Composition-based stats. Identities = 49/159 (30%), Positives = 73/159 (45%), Gaps = 22/159 (13%) Query: 1 MTIQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESV 60 MT +D KK AR A +YQ D+ G S EI Y E + ES Sbjct: 1 MTNRDKKK----------AREHAYLMMYQYDLGGLSPEEIAFNYW--------EDNKESE 42 Query: 61 YLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHS 120 + + + ++ ++ID+ IS L + W SRL + SILR E+ Sbjct: 43 EIKQMATY---LFKKTVENLKNIDIEISRHLKKGWLISRLMPMDRSILRVATYEISNESF 99 Query: 121 VPVEVIISEYVCIAHDFF-YGDEPKFINAVLDKVSRKEE 158 P+E +I++ V A + PKFINA+LDKV++ +E Sbjct: 100 SPIEAVINDAVDAAKFYGEDEKSPKFINAILDKVAKNKE 138 >gi|315924276|ref|ZP_07920500.1| N utilization substance protein B [Pseudoramibacter alactolyticus ATCC 23263] gi|315622437|gb|EFV02394.1| N utilization substance protein B [Pseudoramibacter alactolyticus ATCC 23263] Length = 158 Score = 126 bits (318), Expect = 9e-28, Method: Composition-based stats. Identities = 35/145 (24%), Positives = 65/145 (44%), Gaps = 8/145 (5%) Query: 9 DLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEW 68 ++K +RR R A++A++QI+ ++ A + D + H + Sbjct: 3 EVKKQNRRHE-RELALRAVFQIEFHQD------AQDLQKGIAAVIDSDAGFEHDHGSSGY 55 Query: 69 FRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIIS 128 ++ V+D ID I+ L + W RL +ILR E+ P+E+ I+ Sbjct: 56 AAYLVDVVVDHLAAIDERIAQYLRKDWHMDRLPGAEKAILRVATAEMCY-LDQPLEIAIN 114 Query: 129 EYVCIAHDFFYGDEPKFINAVLDKV 153 E V +A + D P++IN +L+ + Sbjct: 115 EAVELAKRYCDEDAPRYINGILNNL 139 >gi|323484853|ref|ZP_08090209.1| transcription antitermination factor NusB [Clostridium symbiosum WAL-14163] gi|323693777|ref|ZP_08107972.1| transcription antitermination factor NusB [Clostridium symbiosum WAL-14673] gi|323401849|gb|EGA94191.1| transcription antitermination factor NusB [Clostridium symbiosum WAL-14163] gi|323502163|gb|EGB18030.1| transcription antitermination factor NusB [Clostridium symbiosum WAL-14673] Length = 171 Score = 126 bits (318), Expect = 1e-27, Method: Composition-based stats. Identities = 36/146 (24%), Positives = 62/146 (42%), Gaps = 8/146 (5%) Query: 16 RGIARLAAVQALYQIDIIGC-STTEIISEYETYRFCADTELDVESVYLHV------DLEW 68 R R + L+ D T E + EY T + ES LH D + Sbjct: 27 RRELREHCFKLLFCADFYPEGETKEQMEEYFTEPVEEVSAPGGESEILHSPALDVFDGGY 86 Query: 69 FRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIIS 128 + ++++ +D I+ + + W+ R+ + +ILR + E+ VP +V I+ Sbjct: 87 VTNKVERIIEKIPDLDSRINE-IAKGWTTKRMGKVELTILRLALFEIQYDEDVPEKVAIN 145 Query: 129 EYVCIAHDFFYGDEPKFINAVLDKVS 154 E V +A F D P F+N +L K+ Sbjct: 146 EAVELAKKFGGDDSPSFVNGILAKLV 171 >gi|291545446|emb|CBL18554.1| transcription antitermination factor NusB [Ruminococcus sp. SR1/5] Length = 158 Score = 126 bits (317), Expect = 1e-27, Method: Composition-based stats. Identities = 33/140 (23%), Positives = 59/140 (42%), Gaps = 10/140 (7%) Query: 15 RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74 RR R + ++ + ++ E ++E + F EL + D E+ + Sbjct: 2 RRREQREHVFKLMF---MTEFNSEEEMTEQLSLYFEGLGELSEQ------DQEYMKKKYA 52 Query: 75 GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134 V + + ID ++S + W R+ + + LR V E+ VP V I+E V +A Sbjct: 53 HVKEHLEEIDAQLNSA-SRGWKTKRMSRVDLAALRLAVYEMEYDADVPTGVAINEAVELA 111 Query: 135 HDFFYGDEPKFINAVLDKVS 154 F F+N VL K++ Sbjct: 112 KRFGGDASGSFVNGVLGKIA 131 >gi|195941845|ref|ZP_03087227.1| transcription antitermination protein NusB [Borrelia burgdorferi 80a] gi|225549246|ref|ZP_03770219.1| transcription antitermination factor NusB [Borrelia burgdorferi 94a] gi|225370104|gb|EEG99544.1| transcription antitermination factor NusB [Borrelia burgdorferi 94a] Length = 142 Score = 126 bits (317), Expect = 1e-27, Method: Composition-based stats. Identities = 40/143 (27%), Positives = 67/143 (46%), Gaps = 9/143 (6%) Query: 17 GIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGV 76 R+ A Q +Y IDI + +I + D +LD+E+ + ++ ++ G Sbjct: 2 HEVRVLAFQKIYSIDINQSAMDDIFDIFN----IEDKDLDIENESIK---SFYSSLVIGT 54 Query: 77 MDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECH-SVPVEVIISEYVCIAH 135 + +HID LI ++ WS R+D + +ILR GV L + II E + IA Sbjct: 55 FNNLEHIDSLIRD-ISLNWSLERMDKVDLAILRMGVYSLKFQNFENSKRAIIDEAILIAK 113 Query: 136 DFFYGDEPKFINAVLDKVSRKEE 158 + + KFIN +LD + + E Sbjct: 114 KYGSKNSYKFINGILDALLKNME 136 >gi|216264330|ref|ZP_03436322.1| transcription antitermination factor NusB [Borrelia burgdorferi 156a] gi|221217510|ref|ZP_03588981.1| transcription antitermination factor NusB [Borrelia burgdorferi 72a] gi|223889204|ref|ZP_03623793.1| transcription antitermination factor NusB [Borrelia burgdorferi 64b] gi|225549846|ref|ZP_03770808.1| transcription antitermination factor NusB [Borrelia burgdorferi 118a] gi|215980803|gb|EEC21610.1| transcription antitermination factor NusB [Borrelia burgdorferi 156a] gi|221192788|gb|EEE19004.1| transcription antitermination factor NusB [Borrelia burgdorferi 72a] gi|223885453|gb|EEF56554.1| transcription antitermination factor NusB [Borrelia burgdorferi 64b] gi|225369537|gb|EEG98988.1| transcription antitermination factor NusB [Borrelia burgdorferi 118a] Length = 145 Score = 126 bits (317), Expect = 1e-27, Method: Composition-based stats. Identities = 40/143 (27%), Positives = 67/143 (46%), Gaps = 9/143 (6%) Query: 17 GIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGV 76 R+ A Q +Y IDI + +I + D +LD+E+ + ++ ++ G Sbjct: 5 HEVRVLAFQKIYSIDINQSAMDDIFDIFN----IEDKDLDIENESIK---SFYSSLVIGT 57 Query: 77 MDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECH-SVPVEVIISEYVCIAH 135 + +HID LI ++ WS R+D + +ILR GV L + II E + IA Sbjct: 58 FNNLEHIDSLIRD-ISLNWSLERMDKVDLAILRMGVYSLKFQNFENSKRAIIDEAILIAK 116 Query: 136 DFFYGDEPKFINAVLDKVSRKEE 158 + + KFIN +LD + + E Sbjct: 117 KYGSKNSYKFINGILDALLKNME 139 >gi|160947152|ref|ZP_02094319.1| hypothetical protein PEPMIC_01084 [Parvimonas micra ATCC 33270] gi|158446286|gb|EDP23281.1| hypothetical protein PEPMIC_01084 [Parvimonas micra ATCC 33270] Length = 134 Score = 126 bits (317), Expect = 1e-27, Method: Composition-based stats. Identities = 35/143 (24%), Positives = 64/143 (44%), Gaps = 11/143 (7%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 R AR ++ +YQ+ I + I + Y +E +++ R Sbjct: 3 RSEAREWCMKLIYQLSIHNNFKCDEIESFIEYFDLPSSE-----------VKYIRKNCKS 51 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135 ++D +ID +I L W+++R+ I +ILR V E+ +P V I+E + IA+ Sbjct: 52 IIDNLDNIDNIIKENLEGCWNYNRIAKIDLAILRVAVNEIYYLDDIPESVAINEAIEIAN 111 Query: 136 DFFYGDEPKFINAVLDKVSRKEE 158 + KFIN +L + R ++ Sbjct: 112 KYSTDASYKFINGILGTIVRAKK 134 >gi|224534942|ref|ZP_03675511.1| transcription antitermination factor NusB [Borrelia spielmanii A14S] gi|224513882|gb|EEF84207.1| transcription antitermination factor NusB [Borrelia spielmanii A14S] Length = 142 Score = 125 bits (316), Expect = 1e-27, Method: Composition-based stats. Identities = 36/143 (25%), Positives = 63/143 (44%), Gaps = 9/143 (6%) Query: 17 GIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGV 76 R+ A Q +Y IDI + +I + D E + ++ +++G Sbjct: 2 HEVRVLAFQKIYSIDINQSAMDDIFDIFNIEDKGFDIENESIK-------SFYSSLVNGT 54 Query: 77 MDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECH-SVPVEVIISEYVCIAH 135 + +HID LI ++ WS R+D + +ILR GV L + +I + + IA Sbjct: 55 FNNLEHIDSLI-RNISWNWSLDRMDKVDLAILRMGVYSLKFQNFENSKRAVIDDAILIAK 113 Query: 136 DFFYGDEPKFINAVLDKVSRKEE 158 + + KFIN +LD + + E Sbjct: 114 KYGSKNSYKFINGILDALLKNME 136 >gi|86741891|ref|YP_482291.1| NusB antitermination factor [Frankia sp. CcI3] gi|119390771|sp|Q2J830|NUSB_FRASC RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|86568753|gb|ABD12562.1| NusB antitermination factor [Frankia sp. CcI3] Length = 135 Score = 125 bits (316), Expect = 1e-27, Method: Composition-based stats. Identities = 28/88 (31%), Positives = 45/88 (51%), Gaps = 1/88 (1%) Query: 67 EWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVI 126 E+ ++ GV++R+ ID I+ E W+ R+ + +ILR VLEL+ VP V Sbjct: 23 EYAVELVEGVVERRGEIDERIARY-AEGWTLERMPPVDRNILRIAVLELLWRPDVPDRVA 81 Query: 127 ISEYVCIAHDFFYGDEPKFINAVLDKVS 154 I E V +A + P F+N +L + Sbjct: 82 IDEAVELAKNLSTHRSPAFVNGLLASLV 109 >gi|331091280|ref|ZP_08340121.1| transcription antitermination factor NusB [Lachnospiraceae bacterium 2_1_46FAA] gi|330404727|gb|EGG84266.1| transcription antitermination factor NusB [Lachnospiraceae bacterium 2_1_46FAA] Length = 132 Score = 125 bits (316), Expect = 1e-27, Method: Composition-based stats. Identities = 37/139 (26%), Positives = 61/139 (43%), Gaps = 10/139 (7%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 R R + L+ I+ G E+ + E Y LD D + Sbjct: 3 RTELRQHIFKILFLIEFNGRD--EMSEQIELY-------LDNLEELSEKDRAYIENKYRS 53 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135 V+++ + ID L+++ T W +R++ + +ILR EL VPV V I+E V +A Sbjct: 54 VVEKVEEIDELLNANAT-GWKTARMNKVDLTILRLATYELKWDEDVPVGVAINEAVELAK 112 Query: 136 DFFYGDEPKFINAVLDKVS 154 + + P F+N VL K+ Sbjct: 113 KYSSEEGPSFVNGVLGKLV 131 >gi|281357054|ref|ZP_06243544.1| NusB antitermination factor [Victivallis vadensis ATCC BAA-548] gi|281316612|gb|EFB00636.1| NusB antitermination factor [Victivallis vadensis ATCC BAA-548] Length = 170 Score = 125 bits (316), Expect = 1e-27, Method: Composition-based stats. Identities = 41/158 (25%), Positives = 73/158 (46%), Gaps = 5/158 (3%) Query: 5 DNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHV 64 +++ K +R + R A+Q L++ D+ + + + + E+ Sbjct: 7 NDQAGFKPHAKR-LGRELAMQYLFRCDMRDE-LPSAATFGQFFEEVREQHALQENRLARK 64 Query: 65 DLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVE 124 E+ + + + V K+ ID I + +E W + RL ++ +I+R V E++ VP Sbjct: 65 GREYAQQLYNNVAVHKEEIDATIQAR-SENWEWDRLSVVDRNIMRIAVAEMLYEEEVPPV 123 Query: 125 VIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRS 162 V I E V IA D+ FIN VL+ V K+ +KRS Sbjct: 124 VSIDEAVEIARDYSGEAAGNFINGVLNGV--KDTLKRS 159 >gi|295111308|emb|CBL28058.1| transcription antitermination factor NusB [Synergistetes bacterium SGP1] Length = 180 Score = 125 bits (316), Expect = 2e-27, Method: Composition-based stats. Identities = 41/148 (27%), Positives = 66/148 (44%), Gaps = 12/148 (8%) Query: 21 LAAVQALYQIDII-GCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79 AVQ LY ++ G E + + CA+ E E+ R ++ G R Sbjct: 32 ELAVQFLYSMECGPGQDLEEALELFLGAESCAEAE-------PPAVKEYCRALVRGTWSR 84 Query: 80 KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139 + +D ++ S +T W R+ + ++LR V E ++P + ISE V +A F Sbjct: 85 RTEVDEVLLSVVT-NWRPERMVAVDRAVLRLAVFEGFLDCALPFKSAISEAVNLARSFGT 143 Query: 140 GDEPKFINAVLDKVSRK---EEIKRSGC 164 D +F+N VL +V R+ EE K G Sbjct: 144 EDSARFVNGVLARVVRRLIPEERKEGGA 171 >gi|218249233|ref|YP_002374635.1| transcription antitermination factor NusB [Borrelia burgdorferi ZS7] gi|226321982|ref|ZP_03797507.1| transcription antitermination factor NusB [Borrelia burgdorferi Bol26] gi|218164421|gb|ACK74482.1| transcription antitermination factor NusB [Borrelia burgdorferi ZS7] gi|226232572|gb|EEH31326.1| transcription antitermination factor NusB [Borrelia burgdorferi Bol26] gi|312148021|gb|ADQ30680.1| transcription antitermination factor NusB [Borrelia burgdorferi JD1] Length = 142 Score = 125 bits (316), Expect = 2e-27, Method: Composition-based stats. Identities = 40/143 (27%), Positives = 67/143 (46%), Gaps = 9/143 (6%) Query: 17 GIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGV 76 R+ A Q +Y IDI + +I + D +LD+E+ + ++ ++ G Sbjct: 2 HEVRVLAFQKIYSIDINQSAMDDIFDIFN----IEDKDLDIENESIK---SFYSSLVIGT 54 Query: 77 MDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECH-SVPVEVIISEYVCIAH 135 + +HID LI ++ WS R+D + +ILR GV L + II E + IA Sbjct: 55 FNNLEHIDSLIRD-ISLNWSLERMDKVDLAILRMGVYSLKFENFENSKRAIIDEAILIAK 113 Query: 136 DFFYGDEPKFINAVLDKVSRKEE 158 + + KFIN +LD + + E Sbjct: 114 KYGSKNSYKFINGILDALLKNME 136 >gi|317484770|ref|ZP_07943669.1| transcription antitermination factor NusB [Bilophila wadsworthia 3_1_6] gi|316923977|gb|EFV45164.1| transcription antitermination factor NusB [Bilophila wadsworthia 3_1_6] Length = 146 Score = 125 bits (316), Expect = 2e-27, Method: Composition-based stats. Identities = 30/136 (22%), Positives = 59/136 (43%), Gaps = 3/136 (2%) Query: 26 ALYQIDIIG-CSTTEIISEYETYRFCADTELDVESVYLHVDLEWFR-VIIHGVMDRKQHI 83 LY + + ++ + + D ++D + L F ++ GV +++ Sbjct: 1 MLYSLQFSPSTTLGDVRTAFLEMPDPTDADMDENAETREEKLYGFAWELVEGVWSNVKNL 60 Query: 84 DLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEP 143 D +I ++ W RL I ++LR V E++ VP +V I+E + ++ F Sbjct: 61 DSVIERF-SQNWRVDRLGKIELTLLRLAVFEMLYRADVPPKVAINEALELSTRFGDAKAK 119 Query: 144 KFINAVLDKVSRKEEI 159 FIN +LD + +E Sbjct: 120 SFINGILDAAIKAQEA 135 >gi|225551926|ref|ZP_03772866.1| transcription antitermination factor NusB [Borrelia sp. SV1] gi|225370924|gb|EEH00354.1| transcription antitermination factor NusB [Borrelia sp. SV1] Length = 145 Score = 125 bits (316), Expect = 2e-27, Method: Composition-based stats. Identities = 39/143 (27%), Positives = 66/143 (46%), Gaps = 9/143 (6%) Query: 17 GIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGV 76 R+ A Q +Y IDI + +I + D LD+E+ + ++ ++ G Sbjct: 5 HEVRVLAFQKIYSIDINQSAMDDIFDIFN----IEDKGLDIENESIK---SFYSSLVIGT 57 Query: 77 MDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECH-SVPVEVIISEYVCIAH 135 + +HID LI ++ WS R+D + +ILR GV L + +I E + IA Sbjct: 58 FNNLEHIDSLIRD-ISLNWSLERMDKVDLAILRMGVYSLKFQNFENSKRAVIDEAILIAK 116 Query: 136 DFFYGDEPKFINAVLDKVSRKEE 158 + + KFIN +LD + + E Sbjct: 117 KYGSKNSYKFINGILDALLKNME 139 >gi|288574984|ref|ZP_06393341.1| NusB antitermination factor [Dethiosulfovibrio peptidovorans DSM 11002] gi|288570725|gb|EFC92282.1| NusB antitermination factor [Dethiosulfovibrio peptidovorans DSM 11002] Length = 143 Score = 125 bits (315), Expect = 2e-27, Method: Composition-based stats. Identities = 40/142 (28%), Positives = 65/142 (45%), Gaps = 13/142 (9%) Query: 14 HRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVII 73 +++ AR A+Q LY +D+ +E F + E+DVE+ R ++ Sbjct: 8 YKKHRAREVALQLLYSMDVTKKHD----AEKALNDFSFEDEIDVETGV--------RALV 55 Query: 74 HGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCI 133 GVMD ID LI+ + W R+ + + +R V E + VPV V ISE V + Sbjct: 56 LGVMDHLGEIDNLINVNVV-GWRGDRMVAVDRAAIRLAVYEGLIARVVPVPVAISEAVEL 114 Query: 134 AHDFFYGDEPKFINAVLDKVSR 155 F + +F+N L ++ R Sbjct: 115 VKVFGTDESGRFVNGALARIVR 136 >gi|294786532|ref|ZP_06751786.1| transcription antitermination factor NusB [Parascardovia denticolens F0305] gi|315226110|ref|ZP_07867898.1| transcription antitermination factor NusB [Parascardovia denticolens DSM 10105] gi|294485365|gb|EFG32999.1| transcription antitermination factor NusB [Parascardovia denticolens F0305] gi|315120242|gb|EFT83374.1| transcription antitermination factor NusB [Parascardovia denticolens DSM 10105] Length = 209 Score = 125 bits (315), Expect = 2e-27, Method: Composition-based stats. Identities = 32/147 (21%), Positives = 61/147 (41%), Gaps = 12/147 (8%) Query: 12 LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71 ++ R AR A+ LY+ D G +++ E Y + + Sbjct: 1 MARARTTARKRALNTLYEADEKGEEIVDLLDERLAYPGAQTPLP-----------PYAQE 49 Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131 I+ GV ++ +D + +E W R+ ++ +I R E+I VP +V I E + Sbjct: 50 IVRGVASHRRTVDKALEEH-SEGWDVKRMHVLDRNIARMAAWEIIYNDDVPAKVAIDEAL 108 Query: 132 CIAHDFFYGDEPKFINAVLDKVSRKEE 158 +A + + P F++ +L + R E Sbjct: 109 TLAKAYSDDEAPHFLHGLLSAIERDAE 135 >gi|312149672|gb|ADQ29743.1| transcription antitermination factor NusB [Borrelia burgdorferi N40] Length = 142 Score = 125 bits (315), Expect = 2e-27, Method: Composition-based stats. Identities = 40/143 (27%), Positives = 67/143 (46%), Gaps = 9/143 (6%) Query: 17 GIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGV 76 R+ A Q +Y IDI + +I + D +LD+E+ + ++ ++ G Sbjct: 2 HEVRVLAFQKIYSIDINQSAMDDIFDIFN----IEDKDLDIENESIK---SFYSSLVIGT 54 Query: 77 MDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECH-SVPVEVIISEYVCIAH 135 + +HID LI ++ WS R+D + +ILR GV L + II E + IA Sbjct: 55 FNNLEHIDSLIRD-ISLNWSLERMDKVDLAILRMGVYSLKFQNFENSKRAIIDEAILIAK 113 Query: 136 DFFYGDEPKFINAVLDKVSRKEE 158 + + KFIN +LD + + E Sbjct: 114 KYGSKNSYKFINGILDALLKNME 136 >gi|291536362|emb|CBL09474.1| transcription antitermination factor NusB [Roseburia intestinalis M50/1] gi|291538768|emb|CBL11879.1| transcription antitermination factor NusB [Roseburia intestinalis XB6B4] Length = 137 Score = 125 bits (315), Expect = 2e-27, Method: Composition-based stats. Identities = 28/139 (20%), Positives = 57/139 (41%), Gaps = 10/139 (7%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 R R + L++++ E D + D + + Sbjct: 9 RREIREQVFKMLFRVEFYNQ---------EEMSEQIALCEDDACSWKEKDKTYIFEKVEK 59 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135 + ++ + ID I+ ++E W R+ + +++R V E++ VP +V I+E V +A Sbjct: 60 ISEKLEEIDAKINE-VSEGWKTGRMGKVDLTLIRLAVYEMLYEEDVPAKVAINEAVELAK 118 Query: 136 DFFYGDEPKFINAVLDKVS 154 + + P F+N VL K+ Sbjct: 119 QYGTDNSPSFVNGVLAKLV 137 >gi|213966115|ref|ZP_03394302.1| transcription antitermination protein NusB [Corynebacterium amycolatum SK46] gi|213951213|gb|EEB62608.1| transcription antitermination protein NusB [Corynebacterium amycolatum SK46] Length = 234 Score = 125 bits (315), Expect = 2e-27, Method: Composition-based stats. Identities = 37/132 (28%), Positives = 59/132 (44%), Gaps = 7/132 (5%) Query: 24 VQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHI 83 V L++ + G +++ E D +++ + E+ I+ GV I Sbjct: 39 VDLLFEAEQRGVDVVKLLEERLEMVRNPDLDVNPIA-------EYTEQIVRGVAAEIIGI 91 Query: 84 DLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEP 143 D ISS LTE+W RL + +ILR EL VP V + E V +A ++ Sbjct: 92 DSTISSYLTEEWPLRRLPAVDRAILRLSTWELFYNSDVPPRVAVVEGVELASEYSTDVAA 151 Query: 144 KFINAVLDKVSR 155 +INAVLD ++ Sbjct: 152 PYINAVLDAEAK 163 >gi|224534018|ref|ZP_03674602.1| transcription antitermination factor NusB [Borrelia burgdorferi CA-11.2a] gi|224512854|gb|EEF83221.1| transcription antitermination factor NusB [Borrelia burgdorferi CA-11.2a] Length = 145 Score = 125 bits (315), Expect = 2e-27, Method: Composition-based stats. Identities = 40/143 (27%), Positives = 67/143 (46%), Gaps = 9/143 (6%) Query: 17 GIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGV 76 R+ A Q +Y IDI + +I + D +LD+E+ + ++ ++ G Sbjct: 5 HEVRVLAFQKIYSIDINQSAMDDIFDIFN----IEDKDLDIENESIK---SFYSSLVIGT 57 Query: 77 MDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECH-SVPVEVIISEYVCIAH 135 + +HID LI ++ WS R+D + +ILR GV L + II E + IA Sbjct: 58 FNNLEHIDSLIRD-ISLNWSLERMDKVDLAILRMGVYSLKFENFENSKRAIIDEAILIAK 116 Query: 136 DFFYGDEPKFINAVLDKVSRKEE 158 + + KFIN +LD + + E Sbjct: 117 KYGSKNSYKFINGILDALLKNME 139 >gi|303228824|ref|ZP_07315638.1| transcription antitermination factor NusB [Veillonella atypica ACS-134-V-Col7a] gi|303232103|ref|ZP_07318806.1| transcription antitermination factor NusB [Veillonella atypica ACS-049-V-Sch6] gi|302513209|gb|EFL55248.1| transcription antitermination factor NusB [Veillonella atypica ACS-049-V-Sch6] gi|302516536|gb|EFL58464.1| transcription antitermination factor NusB [Veillonella atypica ACS-134-V-Col7a] Length = 134 Score = 125 bits (315), Expect = 2e-27, Method: Composition-based stats. Identities = 36/149 (24%), Positives = 61/149 (40%), Gaps = 16/149 (10%) Query: 10 LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF 69 + R AR A Q LY + + D + L +D+ + Sbjct: 1 MSKKRNRREARQYAFQVLYANEF--------------HTSNDDVIFPDGEISLSMDIAYA 46 Query: 70 RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIEC-HSVPVEVIIS 128 II GV+ + ID ++ T++ F +D + +ILR + EL V ++I+ Sbjct: 47 NQIIDGVLSHLEEIDTILEPYCTKR-KFVLMDKVDRAILRLAIWELNYNSEEVSPSIVIN 105 Query: 129 EYVCIAHDFFYGDEPKFINAVLDKVSRKE 157 E V +A F K INA+LD ++ + Sbjct: 106 EAVQLAKSFGSDASYKLINAILDAYNKSK 134 >gi|309389162|gb|ADO77042.1| NusB antitermination factor [Halanaerobium praevalens DSM 2228] Length = 133 Score = 125 bits (315), Expect = 2e-27, Method: Composition-based stats. Identities = 37/139 (26%), Positives = 57/139 (41%), Gaps = 11/139 (7%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 R R+ A+Q LY +DI E + + E L DL + I+ G Sbjct: 6 RHKQRIWALQILYGLDIRKKLALE-------HSKKSYENFMAEKGVLSEDL-YVAEILEG 57 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135 ++ + +D I W R+ I +ILR E+ +P +V I+E V IA Sbjct: 58 IILELELLDAQIDQY-AINWDIERMPAIDRNILRIAAYEIQH--DIPAKVAINEAVKIAK 114 Query: 136 DFFYGDEPKFINAVLDKVS 154 + P FIN +L K + Sbjct: 115 KYADDSSPSFINGILSKFA 133 >gi|300172801|ref|YP_003771966.1| N utilization substance protein B [Leuconostoc gasicomitatum LMG 18811] gi|299887179|emb|CBL91147.1| N utilization substance protein B homolog [Leuconostoc gasicomitatum LMG 18811] Length = 138 Score = 125 bits (315), Expect = 2e-27, Method: Composition-based stats. Identities = 32/135 (23%), Positives = 60/135 (44%), Gaps = 14/135 (10%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 R +R AA Q L+ ++ + I Y+ D + ++ +++G Sbjct: 6 RHESRQAAFQVLFALE-KDPKSNNIDKLYDIVLEGKDYD------------DYLPRLVNG 52 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135 V+ K +D I++ L W+ +R++ ILR + EL+ VP +V I E + + Sbjct: 53 VLGTKSELDEQITAHLANGWAINRINKADLIILRLAIYELLNNL-VPYKVAIDEALILTK 111 Query: 136 DFFYGDEPKFINAVL 150 F + KF+N +L Sbjct: 112 TFSDEESRKFVNGLL 126 >gi|258542345|ref|YP_003187778.1| transcription antitermination factor NusB [Acetobacter pasteurianus IFO 3283-01] gi|256633423|dbj|BAH99398.1| transcription antitermination factor NusB [Acetobacter pasteurianus IFO 3283-01] gi|256636482|dbj|BAI02451.1| transcription antitermination factor NusB [Acetobacter pasteurianus IFO 3283-03] gi|256639535|dbj|BAI05497.1| transcription antitermination factor NusB [Acetobacter pasteurianus IFO 3283-07] gi|256642591|dbj|BAI08546.1| transcription antitermination factor NusB [Acetobacter pasteurianus IFO 3283-22] gi|256645646|dbj|BAI11594.1| transcription antitermination factor NusB [Acetobacter pasteurianus IFO 3283-26] gi|256648699|dbj|BAI14640.1| transcription antitermination factor NusB [Acetobacter pasteurianus IFO 3283-32] gi|256651752|dbj|BAI17686.1| transcription antitermination factor NusB [Acetobacter pasteurianus IFO 3283-01-42C] gi|256654743|dbj|BAI20670.1| transcription antitermination factor NusB [Acetobacter pasteurianus IFO 3283-12] Length = 174 Score = 125 bits (315), Expect = 2e-27, Method: Composition-based stats. Identities = 55/173 (31%), Positives = 86/173 (49%), Gaps = 4/173 (2%) Query: 1 MTIQDNKKDLKLSHR-RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELD--V 57 MT ++ LK + R R AR+AAVQAL+QID G +I ++ +RF + Sbjct: 1 MTELQDEPRLKGAQRPRTAARVAAVQALFQIDQNGDRPENVIEQFLVHRFGTTLDGASYE 60 Query: 58 ESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIE 117 + D + F I+ V + + + L E W +RLD +L ++L A E E Sbjct: 61 DGCIPEADTQLFSHIVRLVTSMRTQVTQEVEKTLPETWPIARLDPVLRALLLAAAAEATE 120 Query: 118 CHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRSGCVSAITQ 170 P V+I+EY+ +AH FF GDEP+ +N VLD + ++ +R+ Q Sbjct: 121 G-DAPAPVLINEYMDVAHAFFSGDEPRLVNGVLDTLFKRLAAERNHDTEQTQQ 172 >gi|255284121|ref|ZP_05348676.1| transcription antitermination factor NusB [Bryantella formatexigens DSM 14469] gi|255265295|gb|EET58500.1| transcription antitermination factor NusB [Bryantella formatexigens DSM 14469] Length = 134 Score = 125 bits (315), Expect = 2e-27, Method: Composition-based stats. Identities = 33/140 (23%), Positives = 64/140 (45%), Gaps = 8/140 (5%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 R R + L+ ++ E+ + E Y + E+ D E+ H Sbjct: 3 RREIREHIFKLLFLLEFYQK--EELNEQAELY-----MDEVEEAAPTEKDAEYIFDKFHK 55 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135 + ++ +D +++ ++ W R++ + +ILR E++E +PV V I+E V +A Sbjct: 56 IEEKLPQLDERLAAE-SQGWKLGRMNKVDLAILRLAAYEVLEDDDIPVGVAINEAVELAK 114 Query: 136 DFFYGDEPKFINAVLDKVSR 155 + D P F+N VL K++R Sbjct: 115 KYGGDDSPSFVNGVLGKIAR 134 >gi|224532931|ref|ZP_03673541.1| transcription antitermination factor NusB [Borrelia burgdorferi WI91-23] gi|224512130|gb|EEF82521.1| transcription antitermination factor NusB [Borrelia burgdorferi WI91-23] Length = 145 Score = 125 bits (315), Expect = 2e-27, Method: Composition-based stats. Identities = 40/143 (27%), Positives = 67/143 (46%), Gaps = 9/143 (6%) Query: 17 GIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGV 76 R+ A Q +Y IDI + +I + D +LD+E+ + ++ ++ G Sbjct: 5 HEVRVLAFQKIYSIDINQSAMDDIFDIFN----IEDKDLDIENESIK---SFYSSLVIGT 57 Query: 77 MDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECH-SVPVEVIISEYVCIAH 135 + +HID LI ++ WS R+D + +ILR GV L + II E + IA Sbjct: 58 FNNLEHIDSLIRD-ISLNWSLERMDKVDLAILRMGVYSLKFQNFENSKRAIIDEAILIAK 116 Query: 136 DFFYGDEPKFINAVLDKVSRKEE 158 + + KFIN +LD + + E Sbjct: 117 KYGSKNSYKFINGILDALLKNME 139 >gi|15594453|ref|NP_212241.1| transcription antitermination protein NusB [Borrelia burgdorferi B31] gi|7387971|sp|O51134|NUSB_BORBU RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|2687995|gb|AAC66498.1| N-utilization substance protein B (nusB) [Borrelia burgdorferi B31] Length = 145 Score = 125 bits (315), Expect = 2e-27, Method: Composition-based stats. Identities = 41/143 (28%), Positives = 67/143 (46%), Gaps = 9/143 (6%) Query: 17 GIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGV 76 R+ A Q +Y IDI + +I + D +LD+E+ + ++ ++ G Sbjct: 5 HEVRVLAFQKIYSIDINQSAMDDIFDIFN----IEDKDLDIENESIK---SFYSSLVIGT 57 Query: 77 MDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECH-SVPVEVIISEYVCIAH 135 D +HID LI ++ WS R+D + +ILR GV L + II E + IA Sbjct: 58 FDNLEHIDSLIRD-ISLNWSLERMDKVDLAILRMGVYSLKFQNFENSKRAIIDEAILIAK 116 Query: 136 DFFYGDEPKFINAVLDKVSRKEE 158 + + KFIN +LD + + E Sbjct: 117 KYGSKNSYKFINGILDALLKNME 139 >gi|116625277|ref|YP_827433.1| NusB antitermination factor [Candidatus Solibacter usitatus Ellin6076] gi|122252386|sp|Q01T72|NUSB_SOLUE RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|116228439|gb|ABJ87148.1| NusB antitermination factor [Candidatus Solibacter usitatus Ellin6076] Length = 146 Score = 125 bits (315), Expect = 2e-27, Method: Composition-based stats. Identities = 29/133 (21%), Positives = 52/133 (39%), Gaps = 11/133 (8%) Query: 24 VQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHI 83 +Q L+ D + I+ Y + + + ++ G ++ + Sbjct: 12 LQILFIWDARKQPVEDAINAYYDTLYSDEKPERD---------PFVIDLVRGTVEHLAEV 62 Query: 84 DLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEP 143 D I+ E W R+ + +ILR V E+ P V I E + +A F + Sbjct: 63 DDRITRH-AEHWRMERMPAVDRNILRLAVYEMT-RGGTPAPVTIDEALELARKFSNEESV 120 Query: 144 KFINAVLDKVSRK 156 +F+N VLD V R+ Sbjct: 121 QFVNGVLDAVRRE 133 >gi|325265401|ref|ZP_08132125.1| transcription antitermination factor NusB [Clostridium sp. D5] gi|324029402|gb|EGB90693.1| transcription antitermination factor NusB [Clostridium sp. D5] Length = 132 Score = 125 bits (314), Expect = 2e-27, Method: Composition-based stats. Identities = 34/138 (24%), Positives = 57/138 (41%), Gaps = 10/138 (7%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 R R + L+QI+ E + E+ F + S D E+ Sbjct: 3 RRELREHIFKMLFQIEFNEM---EDMPEHLALYF------ENLSSATEEDKEYITKKFEA 53 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135 ++ + ID +++ T W +R+ + +ILR E+ VP V I+E V +A Sbjct: 54 IVKKVPEIDAILNEK-TTGWKTTRMSKVDLTILRLATYEMKWDEDVPEGVAINEAVELAK 112 Query: 136 DFFYGDEPKFINAVLDKV 153 F + P F+N VL K+ Sbjct: 113 RFSGEEGPSFVNGVLAKL 130 >gi|210615789|ref|ZP_03290770.1| hypothetical protein CLONEX_02988 [Clostridium nexile DSM 1787] gi|210150125|gb|EEA81134.1| hypothetical protein CLONEX_02988 [Clostridium nexile DSM 1787] Length = 132 Score = 125 bits (314), Expect = 3e-27, Method: Composition-based stats. Identities = 39/140 (27%), Positives = 64/140 (45%), Gaps = 10/140 (7%) Query: 15 RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74 R R + L++I+ + E + E E F E D + D + Sbjct: 2 NRSELREHIFRMLFRIEFN---SEEEMKEQEDLYFELLGETDEQ------DKTYILNKYK 52 Query: 75 GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134 V+D+K+ ID L++ T W SR++ + +ILR V E+ VP V I+E V +A Sbjct: 53 AVVDKKEEIDGLLNEY-TTGWKTSRMNRVDLTILRLAVYEMKWDEEVPTGVAINEAVELA 111 Query: 135 HDFFYGDEPKFINAVLDKVS 154 + + P F+N VL K++ Sbjct: 112 KKYSSDEGPSFVNGVLAKLA 131 >gi|326692420|ref|ZP_08229425.1| N utilization substance protein B [Leuconostoc argentinum KCTC 3773] Length = 138 Score = 125 bits (314), Expect = 3e-27, Method: Composition-based stats. Identities = 37/145 (25%), Positives = 66/145 (45%), Gaps = 14/145 (9%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 R +R AA Q L+ ++ ++ I S YE D + ++ +++G Sbjct: 6 RHESRQAAFQVLFALE-KDPTSNSIDSLYEIVLDGKDYD------------DYLPRLVNG 52 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135 V+ K +D I++ L W+ +R++ ILR + EL VP +V I E + +A Sbjct: 53 VLGSKADLDAHITAHLATGWAINRINKADLVILRLAIYELNNQL-VPYKVAIDEALILAK 111 Query: 136 DFFYGDEPKFINAVLDKVSRKEEIK 160 F D+ KF+N +L + + K Sbjct: 112 TFADEDDRKFVNGLLKHFAPTDTPK 136 >gi|329113506|ref|ZP_08242287.1| N utilization substance protein B-like protein [Acetobacter pomorum DM001] gi|326697331|gb|EGE48991.1| N utilization substance protein B-like protein [Acetobacter pomorum DM001] Length = 174 Score = 125 bits (314), Expect = 3e-27, Method: Composition-based stats. Identities = 55/173 (31%), Positives = 86/173 (49%), Gaps = 4/173 (2%) Query: 1 MTIQDNKKDLKLSHR-RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELD--V 57 MT ++ LK + R R AR+AAVQAL+QID G +I ++ +RF + Sbjct: 1 MTELQDEPRLKGAQRPRTAARVAAVQALFQIDQNGDRPENVIEQFLVHRFGTTLDGASYE 60 Query: 58 ESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIE 117 + D + F I+ V + + + L E W +RLD +L ++L A E E Sbjct: 61 DGCIPEADTQLFSHIVRLVTSLRTQVTQEVEKTLPETWPIARLDPVLRALLLAAAAEATE 120 Query: 118 CHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRSGCVSAITQ 170 P V+I+EY+ +AH FF GDEP+ +N VLD + ++ +R+ Q Sbjct: 121 G-DAPAPVLINEYMDVAHAFFSGDEPRLVNGVLDTLFKRLAAERNHDTEQTQQ 172 >gi|152966952|ref|YP_001362736.1| NusB antitermination factor [Kineococcus radiotolerans SRS30216] gi|189035892|sp|A6WCD3|NUSB_KINRD RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|151361469|gb|ABS04472.1| NusB antitermination factor [Kineococcus radiotolerans SRS30216] Length = 136 Score = 125 bits (314), Expect = 3e-27, Method: Composition-based stats. Identities = 30/135 (22%), Positives = 63/135 (46%), Gaps = 14/135 (10%) Query: 24 VQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHI 83 ++ L++ D G + +++ D E+ ++ GV++ + I Sbjct: 12 LEVLFEADQRGLAPLDVLK-------------DKILRADPPVGEYAVTVVEGVVEHQARI 58 Query: 84 DLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEP 143 D ++S+ + W R+ + ++LR G E++ VP V +SE V IA + + P Sbjct: 59 DEVLSTY-SMAWPLDRMPAVDRALLRIGTWEVLYAADVPDHVAVSEAVEIAQELSTDESP 117 Query: 144 KFINAVLDKVSRKEE 158 KF+N +L +++ +E Sbjct: 118 KFVNGLLARIAELKE 132 >gi|183221521|ref|YP_001839517.1| transcription antitermination protein NusB [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] gi|189911605|ref|YP_001963160.1| transcription antitermination protein NusB [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|238687781|sp|B0SB76|NUSB_LEPBA RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|238687828|sp|B0ST01|NUSB_LEPBP RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|167776281|gb|ABZ94582.1| Transcription antitermination protein [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|167779943|gb|ABZ98241.1| N utilization substance protein B-like protein (Protein NusB); L factor [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] Length = 140 Score = 124 bits (313), Expect = 3e-27, Method: Composition-based stats. Identities = 38/144 (26%), Positives = 65/144 (45%), Gaps = 12/144 (8%) Query: 14 HRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVII 73 R R A+ LYQID++G + + E D + ++ Sbjct: 2 SSRHRGRSLALMCLYQIDLVGTDPDRAMKFDWYDKKITREEKD-----------YAVFLV 50 Query: 74 HGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCI 133 GV++ ++ ID LI +E W SR+ ++ ILR +L L + + V+I+E V + Sbjct: 51 KGVVENRKAIDTLIKKY-SENWELSRISVVNRCILRLSILSLQKEPFLAAPVVINEAVEL 109 Query: 134 AHDFFYGDEPKFINAVLDKVSRKE 157 +F + +FIN +LD +KE Sbjct: 110 TKEFETEESAQFINGLLDAFYKKE 133 >gi|257413800|ref|ZP_04744265.2| transcription antitermination factor NusB [Roseburia intestinalis L1-82] gi|257202253|gb|EEV00538.1| transcription antitermination factor NusB [Roseburia intestinalis L1-82] Length = 146 Score = 124 bits (313), Expect = 3e-27, Method: Composition-based stats. Identities = 30/152 (19%), Positives = 63/152 (41%), Gaps = 10/152 (6%) Query: 3 IQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYL 62 IQ+ + + + R R + L++++ E D + Sbjct: 5 IQEERMTEEKNMTRREIREQVFKMLFRVEFYNQ---------EEMSEQIALCEDDACNWK 55 Query: 63 HVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVP 122 D + + + ++ + ID I+ ++E W R+ + +++R V E++ VP Sbjct: 56 EKDKTYIFEKVEKISEKLEEIDAKINE-VSEGWKTGRMGKVDLTLIRLAVYEMLYEEDVP 114 Query: 123 VEVIISEYVCIAHDFFYGDEPKFINAVLDKVS 154 +V I+E V +A + + P F+N VL K+ Sbjct: 115 AKVAINEAVELAKQYGTDNSPSFVNGVLAKLV 146 >gi|261417120|ref|YP_003250803.1| NusB antitermination factor [Fibrobacter succinogenes subsp. succinogenes S85] gi|261373576|gb|ACX76321.1| NusB antitermination factor [Fibrobacter succinogenes subsp. succinogenes S85] gi|302325378|gb|ADL24579.1| N utilization substance protein B [Fibrobacter succinogenes subsp. succinogenes S85] Length = 146 Score = 124 bits (313), Expect = 3e-27, Method: Composition-based stats. Identities = 32/140 (22%), Positives = 62/140 (44%), Gaps = 12/140 (8%) Query: 17 GIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGV 76 AR+ A+Q LY ++I G + + + + D ++ ++ V Sbjct: 7 RPARVFAMQLLYAMEISGGTVADALPGVLEAQPLQDNM-----------KKYGMKLVDLV 55 Query: 77 MDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHD 136 + K +D I +C + W R+ + +LR ++EL+ +P++V+ISE V +A Sbjct: 56 LAHKAELDSEIEAC-SAHWGIERMATLDRIVLRIAMVELLYVPEIPMKVVISEAVQVAAK 114 Query: 137 FFYGDEPKFINAVLDKVSRK 156 F F+N +L +K Sbjct: 115 FSTDSSGTFVNGLLAGFLQK 134 >gi|295108281|emb|CBL22234.1| transcription antitermination factor NusB [Ruminococcus obeum A2-162] Length = 171 Score = 124 bits (313), Expect = 3e-27, Method: Composition-based stats. Identities = 33/140 (23%), Positives = 60/140 (42%), Gaps = 10/140 (7%) Query: 15 RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74 RR R + L+ + +T + E + F E+ D E + Sbjct: 2 RRSEQREHIFKLLF---MTQFNTENEMPEQLSIYFEGLGEV------SEKDQEAIQQKYD 52 Query: 75 GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134 +++ + ID +++ + W +R++ + + LR V E+ VPV V I+E V +A Sbjct: 53 HILEHLEEIDEILNDY-SRGWKTTRMNRVDLTALRLAVYEMKMDEDVPVGVAINEAVELA 111 Query: 135 HDFFYGDEPKFINAVLDKVS 154 F D F+N VL K++ Sbjct: 112 KLFGGEDSGSFVNGVLGKIA 131 >gi|268680366|ref|YP_003304797.1| transcription antitermination factor NusB [Sulfurospirillum deleyianum DSM 6946] gi|268618397|gb|ACZ12762.1| transcription antitermination factor NusB [Sulfurospirillum deleyianum DSM 6946] Length = 136 Score = 124 bits (313), Expect = 3e-27, Method: Composition-based stats. Identities = 39/145 (26%), Positives = 62/145 (42%), Gaps = 13/145 (8%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 R AR + + LY DI + I E + + + E+ + G Sbjct: 4 RHQARESIITLLYAEDIGNAGIDKFIDELFEEKKIRNQQ-----------KEFALGLYQG 52 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135 V ID I+ L E W+ S + M+ +ILR G E++ + V+I+E + +A Sbjct: 53 VKAHLSVIDEAINRHLKE-WNLSEIGMLERAILRLGGYEILYS-ELDNAVVINEAIELAK 110 Query: 136 DFFYGDEPKFINAVLDKVSRKEEIK 160 PKFIN VLD + ++ E K Sbjct: 111 KLCNETSPKFINGVLDAICKEGEAK 135 >gi|111224614|ref|YP_715408.1| antitermination factor NusB [Frankia alni ACN14a] gi|111152146|emb|CAJ63876.1| Antitermination factor NusB [Frankia alni ACN14a] Length = 124 Score = 124 bits (313), Expect = 3e-27, Method: Composition-based stats. Identities = 26/86 (30%), Positives = 44/86 (51%), Gaps = 1/86 (1%) Query: 67 EWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVI 126 E+ ++ GV++ + I+ I E W+ R+ + +ILR VLEL+ VP V+ Sbjct: 23 EYAEGLVRGVVEHWREINERIGRH-AEGWTLERMPPVDRNILRIAVLELLWRPDVPPRVV 81 Query: 127 ISEYVCIAHDFFYGDEPKFINAVLDK 152 I E V +A + P F+N ++D Sbjct: 82 IDEAVELAKNLSTDRSPSFVNGLVDA 107 >gi|158313539|ref|YP_001506047.1| NusB antitermination factor [Frankia sp. EAN1pec] gi|158108944|gb|ABW11141.1| NusB antitermination factor [Frankia sp. EAN1pec] Length = 135 Score = 124 bits (313), Expect = 3e-27, Method: Composition-based stats. Identities = 25/96 (26%), Positives = 45/96 (46%), Gaps = 1/96 (1%) Query: 67 EWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVI 126 ++ ++ GV+ ID I+ + W+ R+ + +ILR VLEL VP V+ Sbjct: 23 DYTSDLVEGVVAHLAEIDAHIARF-AQGWTLDRMPPVDRNILRIAVLELFWRSDVPDRVV 81 Query: 127 ISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRS 162 I E V +A P F+N +L + +++ + Sbjct: 82 IDEAVRLAKTISTERSPAFVNGLLASLLKEKPVPEG 117 >gi|224417753|ref|ZP_03655759.1| transcription antitermination protein NusB [Helicobacter canadensis MIT 98-5491] gi|253827096|ref|ZP_04869981.1| transcription antitermination protein NusB [Helicobacter canadensis MIT 98-5491] gi|313141294|ref|ZP_07803487.1| transcription antitermination factor NusB [Helicobacter canadensis MIT 98-5491] gi|253510502|gb|EES89161.1| transcription antitermination protein NusB [Helicobacter canadensis MIT 98-5491] gi|313130325|gb|EFR47942.1| transcription antitermination factor NusB [Helicobacter canadensis MIT 98-5491] Length = 184 Score = 124 bits (313), Expect = 4e-27, Method: Composition-based stats. Identities = 37/145 (25%), Positives = 67/145 (46%), Gaps = 13/145 (8%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 R R VQ LY S + I ++ F E + ++ ++ +G Sbjct: 4 RSHVREVVVQLLYAY----GSGNDAIFKFADEIFG-------EHKIKNKQKDFANLLFNG 52 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135 V++ + +DL I+ L E W F+++ + +ILR GV E+ ++ + I+E + +A Sbjct: 53 VIENLESLDLRIAHQL-ESWDFTKIGDMEKAILRLGVYEIAFN-NLDKAIAINEALELAK 110 Query: 136 DFFYGDEPKFINAVLDKVSRKEEIK 160 F KFIN VLD +++ +I Sbjct: 111 TFGNEASAKFINGVLDNIAKNLQIP 135 >gi|256825101|ref|YP_003149061.1| NusB antitermination factor [Kytococcus sedentarius DSM 20547] gi|256688494|gb|ACV06296.1| NusB antitermination factor [Kytococcus sedentarius DSM 20547] Length = 137 Score = 124 bits (313), Expect = 4e-27, Method: Composition-based stats. Identities = 34/140 (24%), Positives = 62/140 (44%), Gaps = 12/140 (8%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 R AR AV L++ + + +++ E V E+ ++ G Sbjct: 4 RSKARKRAVDLLFEAEQRSLNVEVLMARRRE-----------EPEAQVVVPEFTVTLVEG 52 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135 V+ I+ +SS ++ WS R+ + +ILR G E++ VP V ISE V +A Sbjct: 53 VVSHWASINDALSSW-SQGWSLERMPAVDRAILRLGTYEIVWAEDVPDAVAISEAVNLAA 111 Query: 136 DFFYGDEPKFINAVLDKVSR 155 + P F++ +L ++S+ Sbjct: 112 HLSTDESPNFVSGLLTRISQ 131 >gi|291531066|emb|CBK96651.1| transcription antitermination factor NusB [Eubacterium siraeum 70/3] Length = 143 Score = 124 bits (312), Expect = 4e-27, Method: Composition-based stats. Identities = 35/147 (23%), Positives = 67/147 (45%), Gaps = 14/147 (9%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 R R AA+ L+Q+ + + EI+ E + + E + +SV ++ G Sbjct: 8 RHEMREAALLILFQMKLNPETLDEIL---EDCKESFEMEYNSQSV----------KLVKG 54 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135 V + + ++ +I S + R+ I +I+R + E+ C SVP +V I+E + A Sbjct: 55 VAEHEDELNGIIESY-SPSRKLDRISYINLAIMRIALYEMKYCPSVPDKVAINEAIEFAK 113 Query: 136 DFFYGDEPKFINAVLDKVSRKEEIKRS 162 ++ + +FIN VL+ + K Sbjct: 114 EYADKTDVRFINGVLNSYYKDNPTKEQ 140 >gi|297623354|ref|YP_003704788.1| NusB antitermination factor [Truepera radiovictrix DSM 17093] gi|297164534|gb|ADI14245.1| NusB antitermination factor [Truepera radiovictrix DSM 17093] Length = 165 Score = 124 bits (312), Expect = 4e-27, Method: Composition-based stats. Identities = 37/155 (23%), Positives = 67/155 (43%), Gaps = 4/155 (2%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEI---ISEYETYRFCADTELDVESVYLHVDLEWFRVI 72 R AR A +AL+Q + G E+ I + T + + E L + + Sbjct: 3 RRRARELAFRALFQSERGGEPLLEVWEGIRDDVTEQPPDEAEEAYGDPLEEEGLAFAERL 62 Query: 73 IHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVC 132 + ++ +D +S L E W+F+++ ++LR + E++ VP EV I V Sbjct: 63 LRAFHTHREEVDARLSEAL-EGWTFAQMAQTDLAVLRLALTEILFEPEVPKEVTIEVAVR 121 Query: 133 IAHDFFYGDEPKFINAVLDKVSRKEEIKRSGCVSA 167 IA + + +F+N VL ++ R+ G A Sbjct: 122 IAKRYGGEESGRFVNGVLGRLYREVRGDAPGGEGA 156 >gi|160934296|ref|ZP_02081683.1| hypothetical protein CLOLEP_03167 [Clostridium leptum DSM 753] gi|156866969|gb|EDO60341.1| hypothetical protein CLOLEP_03167 [Clostridium leptum DSM 753] Length = 134 Score = 124 bits (312), Expect = 4e-27, Method: Composition-based stats. Identities = 36/144 (25%), Positives = 65/144 (45%), Gaps = 14/144 (9%) Query: 15 RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74 +R AR A +++ S E++ E+ + D + + + + H Sbjct: 2 KRHEAREQAFFLIFERTFQEASLEELV---ESAQLARDITICG----------FAQNVFH 48 Query: 75 GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134 GV + ID +I W+ +RL + S+LR V E++ +PV V I+E V IA Sbjct: 49 GVEKHGEEIDGMIEKHCI-GWTKNRLSRVAVSVLRTAVYEMLYEEKIPVSVSINEAVEIA 107 Query: 135 HDFFYGDEPKFINAVLDKVSRKEE 158 + ++ F+N VL V+++ E Sbjct: 108 KTYGSTEDASFVNGVLGSVAKELE 131 >gi|116492583|ref|YP_804318.1| NusB antitermination factor [Pediococcus pentosaceus ATCC 25745] gi|122265953|sp|Q03FZ6|NUSB_PEDPA RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|116102733|gb|ABJ67876.1| NusB antitermination factor [Pediococcus pentosaceus ATCC 25745] Length = 133 Score = 124 bits (312), Expect = 4e-27, Method: Composition-based stats. Identities = 32/144 (22%), Positives = 60/144 (41%), Gaps = 11/144 (7%) Query: 12 LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71 +S R R +A + ++ + +SE + E ++ + Sbjct: 1 MSLNRHQIRESAFKIIFA---KSANPDADLSELQDQVL-------EEFHETEAPDQFLKD 50 Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131 ++ GV + I+ IS L + W+ RL+ IL+ G E+ P +V I+E + Sbjct: 51 LVMGVSLNLEAINETISGELKKGWTVKRLESPDRVILQMGTYEIKYT-ETPDKVAINEAL 109 Query: 132 CIAHDFFYGDEPKFINAVLDKVSR 155 +A + D KFIN VL +++ Sbjct: 110 ELAKKYTDEDARKFINGVLSNIAK 133 >gi|126698797|ref|YP_001087694.1| N utilization substance protein B [Clostridium difficile 630] gi|119390758|sp|Q18B61|NUSB_CLOD6 RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|115250234|emb|CAJ68055.1| N utilization substance protein B homolog (Protein NusB) [Clostridium difficile] Length = 169 Score = 124 bits (312), Expect = 5e-27, Method: Composition-based stats. Identities = 34/165 (20%), Positives = 66/165 (40%), Gaps = 21/165 (12%) Query: 11 KLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYET-------------------YRFCA 51 K ++ R ++ +YQI+I + + + Y Sbjct: 4 KDRAQKSTTREYIMKLIYQININKEDFETLEDKVDNFLKDNSEHIINRYKELALQYSKNT 63 Query: 52 DTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAG 111 + +L+ + +D ++ + + + ID LI+ + W+ R+ + SILR Sbjct: 64 NLKLEDTEIEDVIDKKYINTVCKALKENHDKIDELINKH-AKNWTVDRMPKVDVSILRLS 122 Query: 112 VLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRK 156 V E++ P +V I+E V +A + PKFIN +L V + Sbjct: 123 VCEILY-LDTPNKVSINEAVELAKIYCDDKSPKFINGILGSVVDE 166 >gi|254974736|ref|ZP_05271208.1| N utilization substance protein B [Clostridium difficile QCD-66c26] gi|255092125|ref|ZP_05321603.1| N utilization substance protein B [Clostridium difficile CIP 107932] gi|255100216|ref|ZP_05329193.1| N utilization substance protein B [Clostridium difficile QCD-63q42] gi|255306105|ref|ZP_05350277.1| N utilization substance protein B [Clostridium difficile ATCC 43255] gi|255313862|ref|ZP_05355445.1| N utilization substance protein B [Clostridium difficile QCD-76w55] gi|255516543|ref|ZP_05384219.1| N utilization substance protein B [Clostridium difficile QCD-97b34] gi|255649643|ref|ZP_05396545.1| N utilization substance protein B [Clostridium difficile QCD-37x79] gi|260682807|ref|YP_003214092.1| N utilization substance protein B [Clostridium difficile CD196] gi|260686405|ref|YP_003217538.1| N utilization substance protein B [Clostridium difficile R20291] gi|306519760|ref|ZP_07406107.1| N utilization substance protein B [Clostridium difficile QCD-32g58] gi|260208970|emb|CBA62018.1| N utilization substance protein B [Clostridium difficile CD196] gi|260212421|emb|CBE03285.1| N utilization substance protein B [Clostridium difficile R20291] Length = 168 Score = 124 bits (311), Expect = 5e-27, Method: Composition-based stats. Identities = 34/165 (20%), Positives = 66/165 (40%), Gaps = 21/165 (12%) Query: 11 KLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYET-------------------YRFCA 51 K ++ R ++ +YQI+I + + + Y Sbjct: 3 KDRAQKSTTREYIMKLIYQININKEDFETLEDKVDNFLKDNSEHIINRYKELALQYSKNT 62 Query: 52 DTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAG 111 + +L+ + +D ++ + + + ID LI+ + W+ R+ + SILR Sbjct: 63 NLKLEDTEIEDVIDKKYINTVCKALKENHDKIDELINKH-AKNWTVDRMPKVDVSILRLS 121 Query: 112 VLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRK 156 V E++ P +V I+E V +A + PKFIN +L V + Sbjct: 122 VCEILY-LDTPNKVSINEAVELAKIYCDDKSPKFINGILGSVVDE 165 >gi|302670343|ref|YP_003830303.1| transcription antitermination factor NusB [Butyrivibrio proteoclasticus B316] gi|302394816|gb|ADL33721.1| transcription antitermination factor NusB [Butyrivibrio proteoclasticus B316] Length = 133 Score = 124 bits (311), Expect = 5e-27, Method: Composition-based stats. Identities = 36/141 (25%), Positives = 62/141 (43%), Gaps = 9/141 (6%) Query: 15 RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74 R R Q L++++ S E++ + E + D E + D ++ R Sbjct: 2 NRTELREQIFQLLFRVEFN--SKEEMMEQEELFTTEGDLE------FSKSDADYIRDKYE 53 Query: 75 GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134 + D+ + ID I+ W SR+ + +I+R V E+ +VP V I+E V +A Sbjct: 54 KIADKLEEIDKAINEKAV-GWETSRMAKVDLTIIRLAVYEIKFDETVPTGVAINEAVELA 112 Query: 135 HDFFYGDEPKFINAVLDKVSR 155 F P F+N VL K ++ Sbjct: 113 KKFGQDGSPAFVNGVLAKFAQ 133 >gi|303250733|ref|ZP_07336929.1| transcription antitermination protein NusB [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|303252024|ref|ZP_07338195.1| transcription antitermination protein NusB [Actinobacillus pleuropneumoniae serovar 2 str. 4226] gi|302649454|gb|EFL79639.1| transcription antitermination protein NusB [Actinobacillus pleuropneumoniae serovar 2 str. 4226] gi|302650403|gb|EFL80563.1| transcription antitermination protein NusB [Actinobacillus pleuropneumoniae serovar 6 str. Femo] Length = 98 Score = 124 bits (311), Expect = 6e-27, Method: Composition-based stats. Identities = 30/94 (31%), Positives = 47/94 (50%), Gaps = 2/94 (2%) Query: 61 YLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHS 120 VDL +FR ++ G + + ID + L +D I +ILR EL Sbjct: 1 MNGVDLPYFRKLLRGTVLYVEAIDNDLRPFLDRAE--DEVDPIERTILRLSAYELKYELD 58 Query: 121 VPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVS 154 VP +V+I+E + +A F D K+IN +LDK++ Sbjct: 59 VPYKVVINEGIEVAKVFGSDDSHKYINGILDKLA 92 >gi|225570633|ref|ZP_03779656.1| hypothetical protein CLOHYLEM_06733 [Clostridium hylemonae DSM 15053] gi|225160551|gb|EEG73170.1| hypothetical protein CLOHYLEM_06733 [Clostridium hylemonae DSM 15053] Length = 132 Score = 124 bits (311), Expect = 6e-27, Method: Composition-based stats. Identities = 33/140 (23%), Positives = 59/140 (42%), Gaps = 10/140 (7%) Query: 15 RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74 +R R + ++ ++ G E + +LD DL++ Sbjct: 2 KRTQLREHIFKMVFCMEFCG------EEELPEQLALYEEQLDSAG---EEDLKYISGKSR 52 Query: 75 GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134 + + + ID LI+ +T W R++ + +ILR V E+ VP V I E V +A Sbjct: 53 NIAAKTEEIDRLINEHVT-GWKTGRMNKVDLTILRLAVYEMNWDEDVPTGVAIDEAVELA 111 Query: 135 HDFFYGDEPKFINAVLDKVS 154 + + P F+N VL K++ Sbjct: 112 KKYSGEEGPAFVNGVLAKLA 131 >gi|146329208|ref|YP_001209382.1| transcription antitermination factor NusB [Dichelobacter nodosus VCS1703A] gi|146232678|gb|ABQ13656.1| transcription antitermination factor NusB [Dichelobacter nodosus VCS1703A] Length = 145 Score = 124 bits (311), Expect = 6e-27, Method: Composition-based stats. Identities = 37/147 (25%), Positives = 66/147 (44%), Gaps = 13/147 (8%) Query: 14 HRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVII 73 +R AR +Q LYQ IIG EI+ E + +++ +D ++F Sbjct: 12 EQRSQARRQLLQGLYQWQIIGDDA-EIVKENQM----------IDARAGEIDHDYFDAAW 60 Query: 74 HGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCI 133 + + +D + + + LD + +IL G+ EL + + VII+E V + Sbjct: 61 AYITTNTEQLDCCAADFIRRN--MATLDPVEHAILWIGIYELTQRIDIHQNVIINEAVEL 118 Query: 134 AHDFFYGDEPKFINAVLDKVSRKEEIK 160 A F D KF+N VLD+ +++ + Sbjct: 119 AKQFGSDDGYKFVNGVLDQCAKRHRAR 145 >gi|297537700|ref|YP_003673469.1| NusB antitermination factor [Methylotenera sp. 301] gi|297257047|gb|ADI28892.1| NusB antitermination factor [Methylotenera sp. 301] Length = 175 Score = 124 bits (311), Expect = 6e-27, Method: Composition-based stats. Identities = 32/141 (22%), Positives = 64/141 (45%), Gaps = 13/141 (9%) Query: 14 HRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVII 73 R +R ++A+Y+ + T + ++ + Y D +F+ ++ Sbjct: 35 QNRRKSRELVLKAVYRGMLNQSEMTAVYR-----------DMAEDPDYAKADEAYFKQLL 83 Query: 74 HGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCI 133 V + +D +++ + + S L I +IL+ EL+ S+P V+I+E V + Sbjct: 84 EAVGEHATELDEKMAAFIDRQ--VSELSPIEHAILQISGCELMFDMSIPYRVVINEGVEL 141 Query: 134 AHDFFYGDEPKFINAVLDKVS 154 A + D K+IN VLDK++ Sbjct: 142 AKIYGGIDGHKYINGVLDKLA 162 >gi|258545998|ref|ZP_05706232.1| N utilization substance protein B family protein (protein NusB) [Cardiobacterium hominis ATCC 15826] gi|258518766|gb|EEV87625.1| N utilization substance protein B family protein (protein NusB) [Cardiobacterium hominis ATCC 15826] Length = 144 Score = 124 bits (311), Expect = 6e-27, Method: Composition-based stats. Identities = 39/150 (26%), Positives = 63/150 (42%), Gaps = 15/150 (10%) Query: 8 KDLKLSH--RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVD 65 K+LK +R AR +QALYQ + G + V+ +D Sbjct: 2 KNLKRQAIEQRSRARRQLLQALYQWQMSGDDPWSVRRNRL-----------VDPKTGDID 50 Query: 66 LEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEV 125 ++F + +++ D ++ S LD + +IL G+ ELIE + V Sbjct: 51 DDYFNAAFDTISEKRDLYDTRVAEHTHR--RPSTLDPVERAILWIGMYELIERFDIHPTV 108 Query: 126 IISEYVCIAHDFFYGDEPKFINAVLDKVSR 155 I+E V +A F D K+INA LD + + Sbjct: 109 TINEAVELAKQFGAADSYKYINATLDHLGK 138 >gi|221195846|ref|ZP_03568899.1| transcription antitermination factor NusB [Atopobium rimae ATCC 49626] gi|221184320|gb|EEE16714.1| transcription antitermination factor NusB [Atopobium rimae ATCC 49626] Length = 161 Score = 124 bits (311), Expect = 6e-27, Method: Composition-based stats. Identities = 30/139 (21%), Positives = 68/139 (48%), Gaps = 14/139 (10%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 R +AR A+Q L+Q + + E++ ++ LD + + G Sbjct: 8 RTLARSQALQLLFQAEQTNRTVEEVLQ---GEYVLSEGPLD----------PYAEKLACG 54 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135 + +D+++++ + WS SR+ + ++L+ + E++E V V + I+E + ++H Sbjct: 55 TDGIRDDLDMILNAY-SHGWSVSRMPSVDRNLLQLSLYEMLEVSEVDVSITINEVIELSH 113 Query: 136 DFFYGDEPKFINAVLDKVS 154 + + P+FIN +L +V+ Sbjct: 114 AYCGDESPRFINGILGRVA 132 >gi|28895207|ref|NP_801557.1| transcription antitermination protein NusB [Streptococcus pyogenes SSI-1] gi|28810453|dbj|BAC63390.1| putative transcriptional terminator [Streptococcus pyogenes SSI-1] Length = 126 Score = 123 bits (310), Expect = 7e-27, Method: Composition-based stats. Identities = 25/89 (28%), Positives = 46/89 (51%) Query: 68 WFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVII 127 + ++ GV + K+ +D LIS+ L + WS RL + ++LR G+ E+ P V + Sbjct: 31 FLLSLVTGVNNHKEELDNLISTHLKKGWSLERLTLTDKTLLRLGLFEIKYFDETPDRVAL 90 Query: 128 SEYVCIAHDFFYGDEPKFINAVLDKVSRK 156 +E + +A + KFIN +L + + Sbjct: 91 NEIIEVAKKYSDETSAKFINGLLSQYVSE 119 >gi|239627505|ref|ZP_04670536.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA] gi|239517651|gb|EEQ57517.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA] Length = 149 Score = 123 bits (310), Expect = 7e-27, Method: Composition-based stats. Identities = 30/146 (20%), Positives = 60/146 (41%), Gaps = 9/146 (6%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVY--------LHVDLE 67 R R + L+ D + + ++ + + D E V D E Sbjct: 3 RRELREHCFKMLFSADFYPTQEEAVAQLDQYFQSPEEYDTDPEGVLQVLHKVELKSEDSE 62 Query: 68 WFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVII 127 + + ++D+ ID ++ + W R+ + +ILR + E++ ++P +V I Sbjct: 63 YLQARTVNIIDKIPEIDAKLNE-VAAGWKTKRMGKVELTILRLALFEMLYDENIPEKVSI 121 Query: 128 SEYVCIAHDFFYGDEPKFINAVLDKV 153 +E V +A F D P F+N +L + Sbjct: 122 NEAVELAKKFGGNDSPAFVNGILARF 147 >gi|255655206|ref|ZP_05400615.1| N utilization substance protein B [Clostridium difficile QCD-23m63] gi|296451191|ref|ZP_06892932.1| transcription antitermination factor NusB [Clostridium difficile NAP08] gi|296880457|ref|ZP_06904419.1| transcription antitermination factor NusB [Clostridium difficile NAP07] gi|296260012|gb|EFH06866.1| transcription antitermination factor NusB [Clostridium difficile NAP08] gi|296428411|gb|EFH14296.1| transcription antitermination factor NusB [Clostridium difficile NAP07] Length = 168 Score = 123 bits (310), Expect = 7e-27, Method: Composition-based stats. Identities = 34/165 (20%), Positives = 65/165 (39%), Gaps = 21/165 (12%) Query: 11 KLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYET-------------------YRFCA 51 K ++ R ++ +YQI+I + + Y Sbjct: 3 KDRAQKSTTREYIMKLIYQININKEDFETLEDRVDNFLKDNSEHIINRYKELALQYSKNT 62 Query: 52 DTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAG 111 + +L+ + +D ++ + + + ID LI+ + W+ R+ + SILR Sbjct: 63 NLKLEDTEIEDVIDKKYINTVCKALKENHDKIDELINKH-AKNWTVDRMPKVDVSILRLS 121 Query: 112 VLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRK 156 V E++ P +V I+E V +A + PKFIN +L V + Sbjct: 122 VCEILY-LDTPNKVSINEAVELAKIYCDDKSPKFINGILGSVVDE 165 >gi|292670715|ref|ZP_06604141.1| transcription antitermination factor NusB [Selenomonas noxia ATCC 43541] gi|292647661|gb|EFF65633.1| transcription antitermination factor NusB [Selenomonas noxia ATCC 43541] Length = 138 Score = 123 bits (310), Expect = 7e-27, Method: Composition-based stats. Identities = 29/144 (20%), Positives = 58/144 (40%), Gaps = 10/144 (6%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 R AR AA+ L+Q++ E +D +D DL + ++HG Sbjct: 3 RRSAREAALLTLFQLEFDADKACE--------ERVSDLAIDEVDGITEEDLPYAHNLVHG 54 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHS-VPVEVIISEYVCIA 134 ID I + ++W R+ + +++R E+ + V I+E V +A Sbjct: 55 TRSFLSEIDAEIER-MAKEWKLRRMAAVDRNLIRMAYYEMRYQEERIDPPVAINEAVELA 113 Query: 135 HDFFYGDEPKFINAVLDKVSRKEE 158 + D +++N +L + + + Sbjct: 114 KKYGSDDAGRYVNGILAAMQKAVQ 137 >gi|291525244|emb|CBK90831.1| transcription antitermination factor NusB [Eubacterium rectale DSM 17629] gi|291529297|emb|CBK94883.1| transcription antitermination factor NusB [Eubacterium rectale M104/1] Length = 131 Score = 123 bits (310), Expect = 8e-27, Method: Composition-based stats. Identities = 28/139 (20%), Positives = 56/139 (40%), Gaps = 10/139 (7%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 R R + L++++ S E+ + E D E ++ Sbjct: 3 RSKIRENVFKMLFRVEFHDKS--ELAEQMELLNDELTNPTDEEK-------QYIDEKCSA 53 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135 +++ +D LI + W +R+ + +I+R V E+ +P +V I+E V +A Sbjct: 54 IIEHMAELDALIDEK-STGWKTNRMAKVDLAIIRLAVYEIKFEDDIPTKVSINEAVELAK 112 Query: 136 DFFYGDEPKFINAVLDKVS 154 + + F+N VL K + Sbjct: 113 KYGADESGAFVNGVLAKFA 131 >gi|220931474|ref|YP_002508382.1| NusB antitermination factor [Halothermothrix orenii H 168] gi|259514846|sp|B8D2G0|NUSB_HALOH RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|219992784|gb|ACL69387.1| NusB antitermination factor [Halothermothrix orenii H 168] Length = 134 Score = 123 bits (310), Expect = 8e-27, Method: Composition-based stats. Identities = 45/143 (31%), Positives = 70/143 (48%), Gaps = 13/143 (9%) Query: 10 LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF 69 +K++ R R+ A+Q LY +DI S I +T R ++ + Y +F Sbjct: 1 MKIT--RHQERVWALQILYSLDIS--SELNIQKARKTCREFKYKKVLDKKRY------YF 50 Query: 70 RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISE 129 I+ GV++ +Q +D +I+ W R+ I +ILR + E+ +PV V I E Sbjct: 51 EDIVEGVINSRQDLDSIINKY-AIDWDVERMACIDRNILRIALYEI--ESGLPVGVAIDE 107 Query: 130 YVCIAHDFFYGDEPKFINAVLDK 152 V IA DF + PKFIN +L K Sbjct: 108 AVEIAKDFGDSNSPKFINGILAK 130 >gi|229820523|ref|YP_002882049.1| NusB antitermination factor [Beutenbergia cavernae DSM 12333] gi|259514802|sp|C5C681|NUSB_BEUC1 RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|229566436|gb|ACQ80287.1| NusB antitermination factor [Beutenbergia cavernae DSM 12333] Length = 153 Score = 123 bits (309), Expect = 8e-27, Method: Composition-based stats. Identities = 31/102 (30%), Positives = 50/102 (49%), Gaps = 1/102 (0%) Query: 66 LEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEV 125 E+ I+ GV + ID L+ + + WS R+ + +ILR GV EL+ VP V Sbjct: 51 REYTVEIVEGVAAHQARIDELLETY-AQGWSLERMPAVDRAILRIGVWELLFNDDVPDAV 109 Query: 126 IISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRSGCVSA 167 + E V +A + D P F+N +L ++ R + R +A Sbjct: 110 AVDEAVALAAELSTDDSPTFVNGLLGQLLRLAPVLRDEEAAA 151 >gi|118595243|ref|ZP_01552590.1| transcription antitermination protein NusB [Methylophilales bacterium HTCC2181] gi|118441021|gb|EAV47648.1| transcription antitermination protein NusB [Methylophilales bacterium HTCC2181] Length = 155 Score = 123 bits (309), Expect = 9e-27, Method: Composition-based stats. Identities = 39/163 (23%), Positives = 70/163 (42%), Gaps = 18/163 (11%) Query: 2 TIQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVY 61 T KK K + R +R ++++Y+ + +I ++ + + Sbjct: 6 TKTSGKK--KPINNRRKSRELVMKSIYRGIVNQFDINQI-----------KKDIREDPDF 52 Query: 62 LHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSV 121 + D + I+ GV + + I + L S+ L I +IL + + EL V Sbjct: 53 VRSDESMYLSIVEGVHNNFDSLKEEIKTYLDR--SYDELSPIELAILFSSLYELKFSLDV 110 Query: 122 PVEVIISEYVCIAHDFFYGDEPKFINAVLDKVS---RKEEIKR 161 P V+I+E + +A F D KFIN +L+K + RK E+ R Sbjct: 111 PYRVVINEAIEVAKSFGGVDGFKFINGILNKAAQHNRKNELSR 153 >gi|170017709|ref|YP_001728628.1| transcription termination factor [Leuconostoc citreum KM20] gi|169804566|gb|ACA83184.1| Transcription termination factor [Leuconostoc citreum KM20] Length = 140 Score = 123 bits (309), Expect = 9e-27, Method: Composition-based stats. Identities = 37/144 (25%), Positives = 63/144 (43%), Gaps = 14/144 (9%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 R +R AA Q L+ ++ I Y+ D + ++ +++G Sbjct: 6 RHESRQAAFQILFALE-KDPQNNNIDRLYDIVLEGKDFD------------DYLPRLVNG 52 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135 ++ K +D IS L W+ +R++ ILR + EL + VP +V I E + +A Sbjct: 53 ILGNKIDLDAQISEHLAAGWAIARINKADLVILRLAIYELSQQL-VPYKVAIDEALILAK 111 Query: 136 DFFYGDEPKFINAVLDKVSRKEEI 159 F D+ KF+N VL + K E Sbjct: 112 TFADEDDRKFVNGVLKNFAPKVEA 135 >gi|218132225|ref|ZP_03461029.1| hypothetical protein BACPEC_00082 [Bacteroides pectinophilus ATCC 43243] gi|217992884|gb|EEC58884.1| hypothetical protein BACPEC_00082 [Bacteroides pectinophilus ATCC 43243] Length = 135 Score = 123 bits (309), Expect = 9e-27, Method: Composition-based stats. Identities = 34/144 (23%), Positives = 63/144 (43%), Gaps = 10/144 (6%) Query: 10 LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF 69 +++ R R L++++ ++EI S+ Y D D E Y+ Sbjct: 1 MEIKMTRHTIRKHIFSMLFRVEF--HDSSEISSQDGLYLDTIDNITDEERGYMEKR---- 54 Query: 70 RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISE 129 + +++ ID + S ++E W R+ + +ILR V EL+ +P V I+E Sbjct: 55 ---VSAIVELLPEIDKKLES-VSEGWKLERMGKVELTILRLAVYELLYDDDIPANVAINE 110 Query: 130 YVCIAHDFFYGDEPKFINAVLDKV 153 V +A + P F+N +L K+ Sbjct: 111 AVELAKVYGGDTSPAFVNGILAKL 134 >gi|289523061|ref|ZP_06439915.1| transcription antitermination factor NusB [Anaerobaculum hydrogeniformans ATCC BAA-1850] gi|289503604|gb|EFD24768.1| transcription antitermination factor NusB [Anaerobaculum hydrogeniformans ATCC BAA-1850] Length = 151 Score = 123 bits (309), Expect = 1e-26, Method: Composition-based stats. Identities = 35/153 (22%), Positives = 64/153 (41%), Gaps = 15/153 (9%) Query: 14 HRRGIARLAAVQALYQIDI-IGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVI 72 +R AR A+Q LY +DI + E ++ + + + + Sbjct: 4 QQRRRAREIALQLLYALDIRNDQTPDEAMALF------------PFDGESEEVMNYAIWL 51 Query: 73 IHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVC 132 + + ++ ID LI +T W R+ + +R + E + VP+ V ISE + Sbjct: 52 VKEIWGKRVEIDNLIRMHIT-GWRPERMVTVDLEAIRLALFEGVYSKVVPIPVAISEAIE 110 Query: 133 IAHDFFYGDEPKFINAVLDKVSRK-EEIKRSGC 164 +A F + +F+N VL K+ R E++ G Sbjct: 111 LAKRFGTENSGRFVNGVLGKIVRSIAEVEGDGK 143 >gi|111114929|ref|YP_709547.1| transcription antitermination protein NusB [Borrelia afzelii PKo] gi|119372279|sp|Q0SP57|NUSB_BORAP RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|110890203|gb|ABH01371.1| N-utilization substance protein B [Borrelia afzelii PKo] Length = 137 Score = 123 bits (309), Expect = 1e-26, Method: Composition-based stats. Identities = 38/143 (26%), Positives = 67/143 (46%), Gaps = 9/143 (6%) Query: 17 GIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGV 76 R+ A Q +Y IDI + +I + D LD+E+ + ++ +++G Sbjct: 2 HEVRVLAFQKIYSIDINQSAMDDIFDIFN----IEDKGLDIENESIK---SFYSSLVNGT 54 Query: 77 MDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECH-SVPVEVIISEYVCIAH 135 + +HID LI ++ WS R+D + +ILR GV L + +I + + IA Sbjct: 55 FNNLEHIDSLIRD-ISWNWSLDRMDKVDLAILRMGVYSLKFQNFENSKRAVIDDAILIAK 113 Query: 136 DFFYGDEPKFINAVLDKVSRKEE 158 + + KFIN +LD + + E Sbjct: 114 KYGSKNSCKFINGILDALLKNME 136 >gi|238924571|ref|YP_002938087.1| NusB antitermination factor [Eubacterium rectale ATCC 33656] gi|259514834|sp|C4ZCZ0|NUSB_EUBR3 RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|238876246|gb|ACR75953.1| NusB antitermination factor [Eubacterium rectale ATCC 33656] Length = 131 Score = 123 bits (309), Expect = 1e-26, Method: Composition-based stats. Identities = 28/139 (20%), Positives = 56/139 (40%), Gaps = 10/139 (7%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 R R + L++++ S E+ + E D E ++ Sbjct: 3 RSKIRENVFKMLFRVEFHDKS--ELAEQMELLNDELTNPTDEE-------RQYIDEKCSA 53 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135 +++ +D LI + W +R+ + +I+R V E+ +P +V I+E V +A Sbjct: 54 IIEHMAELDALIDEK-STGWKTNRMAKVDLAIIRLAVYEIKFEDDIPTKVSINEAVELAK 112 Query: 136 DFFYGDEPKFINAVLDKVS 154 + + F+N VL K + Sbjct: 113 KYGADESGAFVNGVLAKFA 131 >gi|297566828|ref|YP_003685800.1| NusB antitermination factor [Meiothermus silvanus DSM 9946] gi|296851277|gb|ADH64292.1| NusB antitermination factor [Meiothermus silvanus DSM 9946] Length = 156 Score = 123 bits (309), Expect = 1e-26, Method: Composition-based stats. Identities = 33/146 (22%), Positives = 64/146 (43%), Gaps = 5/146 (3%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVD---LEWFRVI 72 R AR A + L++ + G S E + + +S +D LE+ R + Sbjct: 2 RRKARELAFKVLFEHAVGGVSLEEAWEHVSQNHDPEEASSERDSYDDPLDQGGLEFARRL 61 Query: 73 IHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVC 132 + G + ID ++ + + + WSF ++ ++LR E++ P +I V Sbjct: 62 LEGYQRHESEIDEVLGNTI-QGWSFGQMAKTDLAVLRLAAYEMLYEP-TPYAPLIEVAVK 119 Query: 133 IAHDFFYGDEPKFINAVLDKVSRKEE 158 IA + D +F+N VL ++ ++ E Sbjct: 120 IAKRYGGEDSGRFVNGVLGRLLKRIE 145 >gi|319937360|ref|ZP_08011767.1| hypothetical protein HMPREF9488_02602 [Coprobacillus sp. 29_1] gi|319807726|gb|EFW04319.1| hypothetical protein HMPREF9488_02602 [Coprobacillus sp. 29_1] Length = 134 Score = 122 bits (308), Expect = 1e-26, Method: Composition-based stats. Identities = 39/139 (28%), Positives = 63/139 (45%), Gaps = 10/139 (7%) Query: 15 RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74 RR IAR A +YQ ++ S +I++ + +E + + R ++ Sbjct: 5 RRQIAREKATIGVYQNLLVDSSLEDILTFLSEEKTLTKSEET---------MAFSRWLVE 55 Query: 75 GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134 + K+ LI L + W F RL M+ +IL EL+E +P ++I+E V A Sbjct: 56 TTLQNKESYQTLIEKHLKKGWKFERLSMMEKAILMIAACELLES-DLPKTIVINEAVLNA 114 Query: 135 HDFFYGDEPKFINAVLDKV 153 F D KFIN VL ++ Sbjct: 115 KKFCDDDSYKFINGVLGQI 133 >gi|241894790|ref|ZP_04782086.1| transcription antitermination protein NusB [Weissella paramesenteroides ATCC 33313] gi|241872002|gb|EER75753.1| transcription antitermination protein NusB [Weissella paramesenteroides ATCC 33313] Length = 139 Score = 122 bits (308), Expect = 1e-26, Method: Composition-based stats. Identities = 37/138 (26%), Positives = 66/138 (47%), Gaps = 8/138 (5%) Query: 15 RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74 R R AA Q+L+ + + T + T D E+ E + DL ++ Sbjct: 5 NRHQIRQAAFQSLFGLALN---PTADVDTTITQVLVGDPEIAWEDE-IPADL---TSVVL 57 Query: 75 GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134 GV+ ++ +DL+I+ L+ W+ RL+ ++R + E VP ++ ++E + +A Sbjct: 58 GVVAKQDELDLMITDHLSSDWTLDRLNTTDLVLMRLALYEAKFT-DVPAKIAVNEALQLA 116 Query: 135 HDFFYGDEPKFINAVLDK 152 HDF KFIN +L+K Sbjct: 117 HDFTDDKSRKFINGILNK 134 >gi|206901052|ref|YP_002250763.1| transcription antitermination factor NusB [Dictyoglomus thermophilum H-6-12] gi|254772635|sp|B5YE05|NUSB_DICT6 RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|206740155|gb|ACI19213.1| transcription antitermination factor NusB [Dictyoglomus thermophilum H-6-12] Length = 144 Score = 122 bits (308), Expect = 1e-26, Method: Composition-based stats. Identities = 32/150 (21%), Positives = 62/150 (41%), Gaps = 20/150 (13%) Query: 12 LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71 +S R R +Q L+Q D+ E+ ++ S + + Sbjct: 1 MSKERTRCREKVLQLLFQKDLGQ----EVEVDF--------------SDFSPQGQAFAYR 42 Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131 + G + K D +IS ++ W R+ + +ILR + E+ +P V ++E V Sbjct: 43 LYDGALQYKDLADSIISRF-SKNWKLERMGALERNILRLAIAEMFTFSDIPQAVTVNEAV 101 Query: 132 CIAHDFFYGDEPKFINAVLDKVSRK-EEIK 160 +A + + +F+N +L + R EE+K Sbjct: 102 ELAKKYVSPEAGRFVNGILRNIVRNWEEVK 131 >gi|51598370|ref|YP_072558.1| transcription antitermination protein NusB [Borrelia garinii PBi] gi|81610223|sp|Q662Q5|NUSB_BORGA RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|51572941|gb|AAU06966.1| N-utilization substance protein B [Borrelia garinii PBi] Length = 142 Score = 122 bits (308), Expect = 1e-26, Method: Composition-based stats. Identities = 38/143 (26%), Positives = 67/143 (46%), Gaps = 9/143 (6%) Query: 17 GIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGV 76 R+ A Q +Y IDI + +I + D LD+E+ + ++ +++G Sbjct: 2 HEVRVLAFQKIYSIDINQSAMDDIFDIFS----IEDKGLDIENESIK---SFYSSLVNGT 54 Query: 77 MDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECH-SVPVEVIISEYVCIAH 135 + ++ID LI ++ WS R+D + +ILR GV L + +I E + IA Sbjct: 55 FNNLEYIDSLIKD-ISWNWSLDRMDKVDLAILRMGVYSLKFQNFENSKRALIDEAILIAK 113 Query: 136 DFFYGDEPKFINAVLDKVSRKEE 158 + + KFIN +LD + + E Sbjct: 114 KYGSKNSDKFINGILDALLKNME 136 >gi|320529119|ref|ZP_08030211.1| transcription antitermination factor NusB [Selenomonas artemidis F0399] gi|320138749|gb|EFW30639.1| transcription antitermination factor NusB [Selenomonas artemidis F0399] Length = 137 Score = 122 bits (308), Expect = 1e-26, Method: Composition-based stats. Identities = 25/141 (17%), Positives = 54/141 (38%), Gaps = 10/141 (7%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 R AR AA+ L+Q+D + ++ DL + + ++ G Sbjct: 3 RRHAREAALLTLFQMDFSANEA--------SLYDVSEIAAGAVEGLKEKDLPYAQGLVRG 54 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHS-VPVEVIISEYVCIA 134 ID I+ ++W R+ + +++R E+ + I+E V +A Sbjct: 55 TRAAIGEIDAAIARS-AKEWKLERMPGVDRNLIRMAFYEMYYQEERIDPGTAINEAVELA 113 Query: 135 HDFFYGDEPKFINAVLDKVSR 155 + D +++N +L + + Sbjct: 114 KKYGAEDAGRYVNGILSAMQK 134 >gi|304389451|ref|ZP_07371414.1| transcription antitermination factor NusB [Mobiluncus curtisii subsp. curtisii ATCC 35241] gi|304327261|gb|EFL94496.1| transcription antitermination factor NusB [Mobiluncus curtisii subsp. curtisii ATCC 35241] Length = 191 Score = 122 bits (308), Expect = 1e-26, Method: Composition-based stats. Identities = 34/140 (24%), Positives = 59/140 (42%), Gaps = 8/140 (5%) Query: 14 HRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVII 73 RR R+ AV LY+ + G T E I R E+ + I+ Sbjct: 6 PRRTRERIRAVDVLYEAHVRGWDTPEGIFSLSQLR-------QDETTAQTPLPAYAVEIL 58 Query: 74 HGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCI 133 GV + + ID +++ ++ W R+ + +I+R E++ V V I+ + I Sbjct: 59 EGVAEHLERIDAALATY-SKAWPLHRMPEVDLAIMRVAAWEILFNPDVTGPVAITAAMQI 117 Query: 134 AHDFFYGDEPKFINAVLDKV 153 A + + PKFIN +L + Sbjct: 118 AEERSTDESPKFINGLLGAI 137 >gi|160893229|ref|ZP_02074017.1| hypothetical protein CLOL250_00775 [Clostridium sp. L2-50] gi|156865312|gb|EDO58743.1| hypothetical protein CLOL250_00775 [Clostridium sp. L2-50] Length = 144 Score = 122 bits (307), Expect = 1e-26, Method: Composition-based stats. Identities = 31/142 (21%), Positives = 56/142 (39%), Gaps = 4/142 (2%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEY---ETYRFCADTELDVESVYLHVDLEWFRVI 72 R R + L+ ++ S +E + D + + Sbjct: 3 RREIRETVFKILFSLEFNDVSEIREEAELELEHASLYDEDDNKMDAVAMTEEEKAYIIDR 62 Query: 73 IHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVC 132 + V+ ID IS +++ W R+ +ILR V E+ +PV+V I+E V Sbjct: 63 VEAVVSHITEIDETISG-ISQGWKLGRIGKAELAILRLAVYEIKFDEDIPVKVAINEAVE 121 Query: 133 IAHDFFYGDEPKFINAVLDKVS 154 +A + + FINA+L K++ Sbjct: 122 LAKTYCDVEAKSFINALLAKLA 143 >gi|322379027|ref|ZP_08053430.1| transcription antitermination protein NusB [Helicobacter suis HS1] gi|322380793|ref|ZP_08054899.1| transcription antitermination protein NusB [Helicobacter suis HS5] gi|321146797|gb|EFX41591.1| transcription antitermination protein NusB [Helicobacter suis HS5] gi|321148519|gb|EFX43016.1| transcription antitermination protein NusB [Helicobacter suis HS1] Length = 133 Score = 122 bits (307), Expect = 1e-26, Method: Composition-based stats. Identities = 32/142 (22%), Positives = 66/142 (46%), Gaps = 13/142 (9%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 R R A V LY + + E S++ R + ++ ++ G Sbjct: 4 RSQVREAVVGLLYAYESGNEAVLEKASDFLNQRKIKN-----------AQQQFALELLKG 52 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135 +DR +++D ++ L + W R+ + +ILR G E++ + P ++I+E + +A Sbjct: 53 TLDRLENLDQILQPLL-KDWPIKRIGSMERAILRLGAYEVLYTTTKPP-IVINEAIELAK 110 Query: 136 DFFYGDEPKFINAVLDKVSRKE 157 + PK INA+LD +++++ Sbjct: 111 QYGEDQAPKLINAILDVLAKQK 132 >gi|229075890|ref|ZP_04208866.1| N utilization substance protein B [Bacillus cereus Rock4-18] gi|228707205|gb|EEL59402.1| N utilization substance protein B [Bacillus cereus Rock4-18] Length = 114 Score = 122 bits (307), Expect = 2e-26, Method: Composition-based stats. Identities = 29/87 (33%), Positives = 45/87 (51%), Gaps = 1/87 (1%) Query: 67 EWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVI 126 E+ ++ G +D K+ ID I L +KW R+ ++ SILR V E+ +P V Sbjct: 25 EFLESLVVGFVDNKEEIDAAIRQNL-KKWKLERISIVDRSILRVAVYEMKYMEEIPHNVT 83 Query: 127 ISEYVCIAHDFFYGDEPKFINAVLDKV 153 I+E + IA F + +FIN VL + Sbjct: 84 INEAIEIAKTFGDEESRRFINGVLSNI 110 >gi|315656698|ref|ZP_07909585.1| transcription antitermination factor NusB [Mobiluncus curtisii subsp. holmesii ATCC 35242] gi|315492653|gb|EFU82257.1| transcription antitermination factor NusB [Mobiluncus curtisii subsp. holmesii ATCC 35242] Length = 191 Score = 122 bits (307), Expect = 2e-26, Method: Composition-based stats. Identities = 34/140 (24%), Positives = 59/140 (42%), Gaps = 8/140 (5%) Query: 14 HRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVII 73 RR R+ AV LY+ + G T E I R E+ + I+ Sbjct: 6 PRRTRERVRAVDVLYEAHVRGWDTPEGIFSLSQLR-------QDETTAQTPLPAYAVEIL 58 Query: 74 HGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCI 133 GV + + ID +++ ++ W R+ + +I+R E++ V V I+ + I Sbjct: 59 EGVAEHLERIDAALATY-SKAWPLHRMPEVDLAIMRVAAWEILFNPDVTGPVAITAAMQI 117 Query: 134 AHDFFYGDEPKFINAVLDKV 153 A + + PKFIN +L + Sbjct: 118 AEERSTDESPKFINGLLGAI 137 >gi|332678675|gb|AEE87804.1| Transcription termination protein NusB [Francisella cf. novicida Fx1] Length = 141 Score = 122 bits (307), Expect = 2e-26, Method: Composition-based stats. Identities = 44/153 (28%), Positives = 70/153 (45%), Gaps = 13/153 (8%) Query: 10 LKLSHR-RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEW 68 +K + R R ARL AVQALYQ I + +E+ +Y + + D + Sbjct: 1 MKTTARARNNARLYAVQALYQKKIADNTFSELKVQYYA----------DNADRHYTDWDL 50 Query: 69 FRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIIS 128 F +I V + ID I + ++ + ++L+ + ELIEC P +VII Sbjct: 51 FYRLIDAVKTNQDTIDKYIKENSSNG--VESINYVDYAVLQVAIAELIECLENPYQVIIK 108 Query: 129 EYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKR 161 EYV I + + KFINAVL +++ + Sbjct: 109 EYVEICYSMGTEEGYKFINAVLQNLAKSIRGEE 141 >gi|56708465|ref|YP_170361.1| N utilisation substance protein B [Francisella tularensis subsp. tularensis SCHU S4] gi|110670936|ref|YP_667493.1| N utilisation substance protein B [Francisella tularensis subsp. tularensis FSC198] gi|224457622|ref|ZP_03666095.1| N utilisation substance protein B [Francisella tularensis subsp. tularensis MA00-2987] gi|254371089|ref|ZP_04987091.1| N utilization substance protein B [Francisella tularensis subsp. tularensis FSC033] gi|254875309|ref|ZP_05248019.1| N utilization substance protein B [Francisella tularensis subsp. tularensis MA00-2987] gi|54113219|gb|AAV29243.1| NT02FT2024 [synthetic construct] gi|56604957|emb|CAG46051.1| N utilisation substance protein B [Francisella tularensis subsp. tularensis SCHU S4] gi|110321269|emb|CAL09434.1| N utilisation substance protein B [Francisella tularensis subsp. tularensis FSC198] gi|151569329|gb|EDN34983.1| N utilization substance protein B [Francisella tularensis subsp. tularensis FSC033] gi|254841308|gb|EET19744.1| N utilization substance protein B [Francisella tularensis subsp. tularensis MA00-2987] gi|282159666|gb|ADA79057.1| N utilisation substance protein B [Francisella tularensis subsp. tularensis NE061598] Length = 141 Score = 122 bits (307), Expect = 2e-26, Method: Composition-based stats. Identities = 44/147 (29%), Positives = 69/147 (46%), Gaps = 13/147 (8%) Query: 10 LKLSHR-RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEW 68 +K + R R ARL AVQALYQ I + +E+ +Y + + D + Sbjct: 1 MKTTARARNNARLYAVQALYQKKIADNTFSELKIQYYA----------DNADRHYTDWDL 50 Query: 69 FRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIIS 128 F +I V + ID I + ++ + ++L+ + ELIEC P +VII Sbjct: 51 FYRLIDAVKTNQDTIDKYIKENSSNG--VESINYVDYAVLQVAIAELIECLENPYQVIIK 108 Query: 129 EYVCIAHDFFYGDEPKFINAVLDKVSR 155 EYV I + + KFINAVL +++ Sbjct: 109 EYVEICYSMGTEEGYKFINAVLQNLAK 135 >gi|312143732|ref|YP_003995178.1| NusB antitermination factor [Halanaerobium sp. 'sapolanicus'] gi|311904383|gb|ADQ14824.1| NusB antitermination factor [Halanaerobium sp. 'sapolanicus'] Length = 133 Score = 122 bits (307), Expect = 2e-26, Method: Composition-based stats. Identities = 34/140 (24%), Positives = 62/140 (44%), Gaps = 13/140 (9%) Query: 16 RGIARLAAVQALYQIDIIGC-STTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74 R R+ +Q LY +DI + ++ F + E+ E + + + ++ Sbjct: 6 RHKQRIWVLQILYGLDIRNKLDLESALKSFKE--FLKEKEIKKEDI-------YAKELLL 56 Query: 75 GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134 GV+ ++ +D I+ W+ R+ + +ILR + E+ +P V I+E V IA Sbjct: 57 GVITEREILDAQINEQ-AIDWTIERMPPVDRNILRIAIYEIQH--EMPAGVAINEAVKIA 113 Query: 135 HDFFYGDEPKFINAVLDKVS 154 F P FIN +L K + Sbjct: 114 KKFADDRSPSFINGILAKFA 133 >gi|163781900|ref|ZP_02176900.1| transcription antitermination protein NusB [Hydrogenivirga sp. 128-5-R1-1] gi|159883120|gb|EDP76624.1| transcription antitermination protein NusB [Hydrogenivirga sp. 128-5-R1-1] Length = 144 Score = 122 bits (306), Expect = 2e-26, Method: Composition-based stats. Identities = 41/152 (26%), Positives = 66/152 (43%), Gaps = 11/152 (7%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 R AR ++ LY+ DI G S I EY + + E+ E+ ++ Sbjct: 4 RKKARENSLMVLYRWDIRGDSIDRIREEYVEEKGIKNREIR----------EYMDKLLST 53 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135 V D+ ID LIS +E WSF RL I ++LR GV EL+ ++Y+ I Sbjct: 54 VRDKLPEIDSLISEY-SEGWSFDRLGYIERNVLRLGVAELLYADPPDPGRAFNDYLDIVK 112 Query: 136 DFFYGDEPKFINAVLDKVSRKEEIKRSGCVSA 167 + +F+N +L K+ ++ S + Sbjct: 113 RYADRKAARFVNGILSKIYKEHRATSSAKRAG 144 >gi|315655389|ref|ZP_07908289.1| transcription antitermination protein NusB [Mobiluncus curtisii ATCC 51333] gi|315490329|gb|EFU79954.1| transcription antitermination protein NusB [Mobiluncus curtisii ATCC 51333] Length = 191 Score = 122 bits (306), Expect = 2e-26, Method: Composition-based stats. Identities = 34/140 (24%), Positives = 59/140 (42%), Gaps = 8/140 (5%) Query: 14 HRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVII 73 RR R+ AV LY+ + G T E I R E+ + I+ Sbjct: 6 PRRTRERVRAVDVLYEAHVRGWDTPEGIFSLSQLR-------QDETTAQTPLPAYAVEIL 58 Query: 74 HGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCI 133 GV + + ID +++ ++ W R+ + +I+R E++ V V I+ + I Sbjct: 59 EGVAEHLERIDAALATY-SKAWPLHRMPEVDLAIMRVAAWEILFNPDVTGPVAITAAMQI 117 Query: 134 AHDFFYGDEPKFINAVLDKV 153 A + + PKFIN +L + Sbjct: 118 AEERSTDESPKFINGLLGAI 137 >gi|308234826|ref|ZP_07665563.1| transcription antitermination factor NusB [Gardnerella vaginalis ATCC 14018] gi|311114640|ref|YP_003985861.1| transcription antitermination factor NusB [Gardnerella vaginalis ATCC 14019] gi|310946134|gb|ADP38838.1| transcription antitermination factor NusB [Gardnerella vaginalis ATCC 14019] Length = 176 Score = 122 bits (306), Expect = 2e-26, Method: Composition-based stats. Identities = 35/144 (24%), Positives = 60/144 (41%), Gaps = 12/144 (8%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 R AR A+ LY+ D + ++ E E ++ II G Sbjct: 3 RSTARKRALNTLYEADEKNQNILSLLEERLK-----------EPGAQTPLPDYAVDIIRG 51 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135 V +R+ ID ++ + W R+ +I +ILR V E++ VP +V I E + +A Sbjct: 52 VGERRNRIDKTLNRY-STGWKVGRMAVIDRNILRIAVWEILLNDEVPDKVAIDEAISLAK 110 Query: 136 DFFYGDEPKFINAVLDKVSRKEEI 159 + D FI+ +L + +E Sbjct: 111 MYSDDDAIAFIHGLLSAIMADKEA 134 >gi|302874807|ref|YP_003843440.1| NusB antitermination factor [Clostridium cellulovorans 743B] gi|307690576|ref|ZP_07633022.1| transcription antitermination protein NusB [Clostridium cellulovorans 743B] gi|302577664|gb|ADL51676.1| NusB antitermination factor [Clostridium cellulovorans 743B] Length = 134 Score = 122 bits (306), Expect = 2e-26, Method: Composition-based stats. Identities = 34/139 (24%), Positives = 61/139 (43%), Gaps = 7/139 (5%) Query: 15 RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74 R R A++ Y + I +I ++ + E + VD + I+ Sbjct: 2 NRRKTREIAIKLTYSLMIQQIDYKTVIENFK------EVEDKEDEDLKDVDFTFVETILS 55 Query: 75 GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134 G+ + K + + L+S L W +R+ + +IL + E+ +P V I+E V IA Sbjct: 56 GISENKSNYEELVSQNLI-GWKLNRISKLNLAILLVAIYEIKNIDDIPKAVSINEAVEIA 114 Query: 135 HDFFYGDEPKFINAVLDKV 153 + P FIN++LDK+ Sbjct: 115 KKYSDDKAPNFINSILDKI 133 >gi|239948522|ref|ZP_04700275.1| transcription antitermination factor NusB [Rickettsia endosymbiont of Ixodes scapularis] gi|239922798|gb|EER22822.1| transcription antitermination factor NusB [Rickettsia endosymbiont of Ixodes scapularis] Length = 156 Score = 121 bits (305), Expect = 2e-26, Method: Composition-based stats. Identities = 43/145 (29%), Positives = 86/145 (59%), Gaps = 2/145 (1%) Query: 14 HRRGIARLAAVQALYQ-IDIIGCSTTEIISEYETYRFCADTELD-VESVYLHVDLEWFRV 71 +++ IAR+AAVQA+YQ I +I+ ++ ++ D E++ + + + F++ Sbjct: 7 NKKSIARIAAVQAIYQNILQNNDDMDDIMQNILSFYQNNNSITDLPENLKISLSISHFKM 66 Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131 ++ V + +D +I + LT + + ++L ++LRAG+ EL+ C + P +V+I+EY Sbjct: 67 LVKSVFENINKLDEIIDNHLTNNKDPAHMLILLRALLRAGICELLFCPTTPAKVVINEYT 126 Query: 132 CIAHDFFYGDEPKFINAVLDKVSRK 156 IA+D E F+N+VLDK++++ Sbjct: 127 DIANDMLNEHEIGFVNSVLDKIAKE 151 >gi|254368862|ref|ZP_04984875.1| N utilisation substance protein B [Francisella tularensis subsp. holarctica FSC022] gi|157121783|gb|EDO65953.1| N utilisation substance protein B [Francisella tularensis subsp. holarctica FSC022] Length = 141 Score = 121 bits (305), Expect = 3e-26, Method: Composition-based stats. Identities = 44/153 (28%), Positives = 70/153 (45%), Gaps = 13/153 (8%) Query: 10 LKLSHR-RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEW 68 +K + R R ARL AVQALYQ I + +E+ +Y + + D + Sbjct: 1 MKTTARARNNARLYAVQALYQKKIADNTFSELKIQYYA----------DNADRHYTDWDL 50 Query: 69 FRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIIS 128 F +I V + ID I + ++ + ++L+ + ELIEC P +VII Sbjct: 51 FYRLIDAVKTNQDTIDKYIKENSSNG--VESINYVDYAVLQVAIAELIECLENPYQVIIK 108 Query: 129 EYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKR 161 EYV I + + KFINAVL +++ + Sbjct: 109 EYVEICYSMGTEEGYKFINAVLQNLAKSIRSEE 141 >gi|134301537|ref|YP_001121505.1| transcription antitermination factor NusB [Francisella tularensis subsp. tularensis WY96-3418] gi|134049314|gb|ABO46385.1| transcription antitermination factor NusB [Francisella tularensis subsp. tularensis WY96-3418] Length = 141 Score = 121 bits (305), Expect = 3e-26, Method: Composition-based stats. Identities = 44/153 (28%), Positives = 70/153 (45%), Gaps = 13/153 (8%) Query: 10 LKLSHR-RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEW 68 +K + R R ARL AVQALYQ I + +E+ +Y + + D + Sbjct: 1 MKTTARARNNARLYAVQALYQKKIADNTFSELKIQYYA----------DNADRHYTDWDL 50 Query: 69 FRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIIS 128 F +I V + ID I + ++ + ++L+ + ELIEC P +VII Sbjct: 51 FYRLIDAVKTNQDTIDKYIKENSSNG--VESINYVDYAVLQVAIAELIECLENPYQVIIK 108 Query: 129 EYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKR 161 EYV I + + KFINAVL +++ + Sbjct: 109 EYVEICYSMGTEEGYKFINAVLQNLAKSIRGEE 141 >gi|315453162|ref|YP_004073432.1| N utilization substance protein B-like protein [Helicobacter felis ATCC 49179] gi|315132214|emb|CBY82842.1| N utilization substance protein B homolog [Helicobacter felis ATCC 49179] Length = 134 Score = 121 bits (305), Expect = 3e-26, Method: Composition-based stats. Identities = 29/142 (20%), Positives = 65/142 (45%), Gaps = 13/142 (9%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 R R A V LY + + + ++ T + + + ++ G Sbjct: 4 RSQVREAVVSLLYAYESGNEAMLKSAPDFFTQKKIKN-----------AQQRFALDLLEG 52 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135 ++ +D ++ L + W +R+ + +ILR G E++ + PV V+I+E + ++ Sbjct: 53 TLEHLPSLDNALTPLL-KDWDLARIGSMERAILRLGAYEILHTPTNPV-VVINEAIELSK 110 Query: 136 DFFYGDEPKFINAVLDKVSRKE 157 ++ + PK INA+LD + +++ Sbjct: 111 NYGEDNAPKLINAILDALCKQK 132 >gi|229168926|ref|ZP_04296643.1| N utilization substance protein B [Bacillus cereus AH621] gi|228614518|gb|EEK71626.1| N utilization substance protein B [Bacillus cereus AH621] Length = 114 Score = 121 bits (305), Expect = 3e-26, Method: Composition-based stats. Identities = 29/87 (33%), Positives = 45/87 (51%), Gaps = 1/87 (1%) Query: 67 EWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVI 126 E+ ++ G +D K+ ID I L +KW R+ ++ SILR V E+ +P V Sbjct: 25 EFLESLVVGFVDNKEEIDAAIRQNL-KKWKLERISIVDRSILRVAVCEMKYMEEIPHNVT 83 Query: 127 ISEYVCIAHDFFYGDEPKFINAVLDKV 153 I+E + IA F + +FIN VL + Sbjct: 84 INEAIEIAKTFGDEESRRFINGVLSNI 110 >gi|332981364|ref|YP_004462805.1| NusB antitermination factor [Mahella australiensis 50-1 BON] gi|332699042|gb|AEE95983.1| NusB antitermination factor [Mahella australiensis 50-1 BON] Length = 134 Score = 121 bits (305), Expect = 3e-26, Method: Composition-based stats. Identities = 33/141 (23%), Positives = 57/141 (40%), Gaps = 13/141 (9%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 R AR AV +Y+ID+ + +I+ + + D ++ I+ Sbjct: 3 RRQARQDAVCLMYEIDMQDGDSDDILERFFNTHALNE-----------ADAKYIDEIVKL 51 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135 ++ + ID I + L + +ILR E++ SVP V I E V +A Sbjct: 52 ALEHRDDIDRGIEQ--SCGRKIEYLAKMDLAILRIAAAEMLYMPSVPHRVSIDEAVELAK 109 Query: 136 DFFYGDEPKFINAVLDKVSRK 156 + P FIN VL + ++ Sbjct: 110 RYGDDMSPTFINGVLAGLMKQ 130 >gi|206602422|gb|EDZ38903.1| Transcription antitermination factor (NusB) [Leptospirillum sp. Group II '5-way CG'] Length = 168 Score = 121 bits (305), Expect = 3e-26, Method: Composition-based stats. Identities = 37/179 (20%), Positives = 64/179 (35%), Gaps = 29/179 (16%) Query: 1 MTIQDNKKDLKLSHRR-----GIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTEL 55 M K K R AR+ +Q+L+ + Sbjct: 1 MKPGSAGKKTKDPEGRFQSPFHKARIEVLQSLFAGE----------------YLPGGPPP 44 Query: 56 DVESVYLHVDLEWFRVIIHGVM-DRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLE 114 + L FR + G + + + ID IS + WS R+ + +ILR G+ E Sbjct: 45 FTLTSTLPSQARLFRDRLGGTIREHRAEIDDTISRF-SVDWSLDRMGRVDRNILRMGICE 103 Query: 115 LIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKV------SRKEEIKRSGCVSA 167 ++ VP V I E + +AH F + +FIN +L ++ ++ + G Sbjct: 104 ILFEPEVPFRVTIDESLELAHQFSEPEAVRFINGILHRIGTELAPAKAYASQEDGSPQP 162 >gi|219685303|ref|ZP_03540122.1| transcription antitermination factor NusB [Borrelia garinii Far04] gi|219673076|gb|EED30096.1| transcription antitermination factor NusB [Borrelia garinii Far04] Length = 142 Score = 121 bits (305), Expect = 3e-26, Method: Composition-based stats. Identities = 38/143 (26%), Positives = 67/143 (46%), Gaps = 9/143 (6%) Query: 17 GIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGV 76 R+ A Q +Y IDI + +I + D LD+E+ + ++ +++G Sbjct: 2 HEVRVLAFQKIYSIDINQSAMDDIFDIFT----IEDKGLDIENESIK---SFYSSLVNGT 54 Query: 77 MDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECH-SVPVEVIISEYVCIAH 135 + ++ID LI ++ WS R+D + +ILR GV L + +I E + IA Sbjct: 55 FNNLEYIDNLIRD-ISWNWSLDRMDKVDLAILRMGVYSLKFQNFENSKRALIDEAILIAK 113 Query: 136 DFFYGDEPKFINAVLDKVSRKEE 158 + + KFIN +LD + + E Sbjct: 114 KYGSKNSDKFINGILDALLKNME 136 >gi|153810477|ref|ZP_01963145.1| hypothetical protein RUMOBE_00858 [Ruminococcus obeum ATCC 29174] gi|149833656|gb|EDM88737.1| hypothetical protein RUMOBE_00858 [Ruminococcus obeum ATCC 29174] Length = 180 Score = 121 bits (305), Expect = 3e-26, Method: Composition-based stats. Identities = 32/140 (22%), Positives = 61/140 (43%), Gaps = 10/140 (7%) Query: 15 RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74 RR R + L+ + ++ +S+ + F EL+ D E + Sbjct: 2 RRSEQREHIFKLLF---MTQFNSENEMSDQVSMYFDTLGELE------EKDQEAIQNKYQ 52 Query: 75 GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134 +++ ID +++ + W +R++ + + LR V E+ VPV V I+E V +A Sbjct: 53 HILEHLDEIDQILNEY-SRGWKTTRMNRVDLTALRLAVYEMKMDEEVPVGVAINEAVELA 111 Query: 135 HDFFYGDEPKFINAVLDKVS 154 F D F+N +L K++ Sbjct: 112 KLFGGEDSGSFVNGILGKIA 131 >gi|307701058|ref|ZP_07638083.1| transcription antitermination factor NusB [Mobiluncus mulieris FB024-16] gi|307614053|gb|EFN93297.1| transcription antitermination factor NusB [Mobiluncus mulieris FB024-16] Length = 197 Score = 121 bits (304), Expect = 3e-26, Method: Composition-based stats. Identities = 33/140 (23%), Positives = 60/140 (42%), Gaps = 8/140 (5%) Query: 14 HRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVII 73 R AR AV LY+ + + I R +TE ++ + R I+ Sbjct: 6 PSRTRARSRAVDVLYEAHLKDLDDSAGIYSLAKLR---ETETTAQTPMP----PYAREIL 58 Query: 74 HGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCI 133 GV + + ID +++ + WS R+ + +I+R E++ V V I+ + + Sbjct: 59 EGVAEHLERIDAALATY-SRAWSLHRMPEVDLAIMRVATWEILFNPDVDGPVAITAAMQL 117 Query: 134 AHDFFYGDEPKFINAVLDKV 153 A + + PKFIN +L + Sbjct: 118 AAERSTDESPKFINGLLGTI 137 >gi|229174859|ref|ZP_04302379.1| N utilization substance protein B [Bacillus cereus MM3] gi|228608527|gb|EEK65829.1| N utilization substance protein B [Bacillus cereus MM3] Length = 114 Score = 121 bits (304), Expect = 3e-26, Method: Composition-based stats. Identities = 27/87 (31%), Positives = 45/87 (51%), Gaps = 1/87 (1%) Query: 67 EWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVI 126 ++ ++ G ++ K+ ID I L +KW R+ ++ SILR V E+ +P V Sbjct: 25 DFLESLVVGFVENKEVIDEAIRQNL-KKWKLERISIVDRSILRVAVYEMKYMEEIPHNVT 83 Query: 127 ISEYVCIAHDFFYGDEPKFINAVLDKV 153 I+E + IA F + +FIN VL + Sbjct: 84 INEAIEIAKTFGDEESRRFINGVLSNI 110 >gi|219684900|ref|ZP_03539842.1| transcription antitermination factor NusB [Borrelia garinii PBr] gi|219671845|gb|EED28900.1| transcription antitermination factor NusB [Borrelia garinii PBr] Length = 145 Score = 121 bits (304), Expect = 3e-26, Method: Composition-based stats. Identities = 38/143 (26%), Positives = 67/143 (46%), Gaps = 9/143 (6%) Query: 17 GIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGV 76 R+ A Q +Y IDI + +I + D LD+E+ + ++ +++G Sbjct: 5 HEVRVLAFQKIYSIDINQSAMDDIFDIFT----IEDKGLDIENESIK---SFYSSLVNGT 57 Query: 77 MDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECH-SVPVEVIISEYVCIAH 135 + ++ID LI ++ WS R+D + +ILR GV L + +I E + IA Sbjct: 58 FNNLEYIDNLIRD-ISWNWSLDRMDKVDLAILRMGVYSLKFQNFENSKRALIDEAILIAK 116 Query: 136 DFFYGDEPKFINAVLDKVSRKEE 158 + + KFIN +LD + + E Sbjct: 117 KYGSKNSDKFINGILDALLKNME 139 >gi|283783379|ref|YP_003374133.1| transcription antitermination factor NusB [Gardnerella vaginalis 409-05] gi|298252678|ref|ZP_06976472.1| transcription termination factor [Gardnerella vaginalis 5-1] gi|283441142|gb|ADB13608.1| transcription antitermination factor NusB [Gardnerella vaginalis 409-05] gi|297533042|gb|EFH71926.1| transcription termination factor [Gardnerella vaginalis 5-1] Length = 160 Score = 121 bits (304), Expect = 4e-26, Method: Composition-based stats. Identities = 32/144 (22%), Positives = 59/144 (40%), Gaps = 12/144 (8%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 R AR A+ LY+ D ++ E E E+ I+ G Sbjct: 3 RSTARKRALNTLYEADEKNQHILSLLEERVK-----------EPGAQTPLPEYAVEIVRG 51 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135 V +R+ ID ++ + W R+ +I +ILR V E++ +P +V I E + +A Sbjct: 52 VGERRNRIDKTLNRY-STGWKVGRMAVIDRNILRIAVWEMLLNDEIPDKVAIDEAIALAK 110 Query: 136 DFFYGDEPKFINAVLDKVSRKEEI 159 + + FI+ +L + ++ Sbjct: 111 MYSDDEAIAFIHGLLSAIMADKDA 134 >gi|269977328|ref|ZP_06184301.1| putative N utilization substance B-like protein [Mobiluncus mulieris 28-1] gi|269934631|gb|EEZ91192.1| putative N utilization substance B-like protein [Mobiluncus mulieris 28-1] Length = 197 Score = 121 bits (304), Expect = 4e-26, Method: Composition-based stats. Identities = 33/140 (23%), Positives = 59/140 (42%), Gaps = 8/140 (5%) Query: 14 HRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVII 73 R AR AV LY+ + + I R +TE ++ + R I+ Sbjct: 6 PSRTRARSRAVDVLYEAHLKDLDDSAGIYSLAKLR---ETETTAQTPMP----PYAREIL 58 Query: 74 HGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCI 133 GV + ID +++ + WS R+ + +I+R E++ V V I+ + + Sbjct: 59 EGVAEHLDRIDAALATY-SRAWSLHRMPEVDLAIMRVATWEILFNPDVDGPVAITAAMQL 117 Query: 134 AHDFFYGDEPKFINAVLDKV 153 A + + PKFIN +L + Sbjct: 118 AAERSTDESPKFINGLLGTI 137 >gi|237752651|ref|ZP_04583131.1| transcription termination protein [Helicobacter winghamensis ATCC BAA-430] gi|229376140|gb|EEO26231.1| transcription termination protein [Helicobacter winghamensis ATCC BAA-430] Length = 199 Score = 121 bits (304), Expect = 4e-26, Method: Composition-based stats. Identities = 34/141 (24%), Positives = 63/141 (44%), Gaps = 13/141 (9%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 R AR+A Q LY ++ + E + E + E+ + + +G Sbjct: 4 RTHARVAVAQLLYAYGSGNDGISKFVEEILS-----------EHKIKNAQNEFAKTLFNG 52 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135 V++ + +DL I + W F R+ + +ILR G E+I + ++I+E + I Sbjct: 53 VLEHLEEVDLRI-KHQIKNWDFERIGDMERAILRLGAYEIIFSG-MDKAIVINEALEITK 110 Query: 136 DFFYGDEPKFINAVLDKVSRK 156 +F KFIN +LD +++ Sbjct: 111 NFSNETSTKFINGILDGIAKN 131 >gi|224437825|ref|ZP_03658772.1| transcription antitermination protein NusB [Helicobacter cinaedi CCUG 18818] gi|313144273|ref|ZP_07806466.1| transcription antitermination protein NusB [Helicobacter cinaedi CCUG 18818] gi|313129304|gb|EFR46921.1| transcription antitermination protein NusB [Helicobacter cinaedi CCUG 18818] Length = 165 Score = 121 bits (304), Expect = 4e-26, Method: Composition-based stats. Identities = 36/141 (25%), Positives = 61/141 (43%), Gaps = 14/141 (9%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 R AR A + LY D+ +I + + + D + +++ G Sbjct: 4 RTQAREAVIGMLYAYDLGNKDILDIARSMFEEKKIKNKQQD-----------FAFLLLQG 52 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135 + Q ID I L E W FSRL + ++LR G E++ V+I+E + + Sbjct: 53 AITNLQSIDEAIIPYLKE-WDFSRLGGMEKAVLRLGAYEILYT-DTDSPVVINEAIELGK 110 Query: 136 DFFYGD-EPKFINAVLDKVSR 155 + D P+F+N VLD +S+ Sbjct: 111 MYGGEDNTPRFLNGVLDALSK 131 >gi|255994610|ref|ZP_05427745.1| transcription antitermination factor NusB [Eubacterium saphenum ATCC 49989] gi|255993323|gb|EEU03412.1| transcription antitermination factor NusB [Eubacterium saphenum ATCC 49989] Length = 135 Score = 120 bits (303), Expect = 4e-26, Method: Composition-based stats. Identities = 31/142 (21%), Positives = 58/142 (40%), Gaps = 12/142 (8%) Query: 15 RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74 R AR A+Q ++QI + + ++ + + E + R + Sbjct: 4 NRSKARTIAMQIIFQIPVHKTTDKVLVDKILSDYKNIGKEE-----------AYIREVFS 52 Query: 75 GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134 V D ID +++ + + W+ + + +ILR V E+ +P V ++E V IA Sbjct: 53 LVTDNIDAIDAELNAKM-KGWTIDSIPKVDLAILRLAVAEICYAKDIPKVVAVNEAVRIA 111 Query: 135 HDFFYGDEPKFINAVLDKVSRK 156 F KFIN +L + + Sbjct: 112 KKFSDDKSAKFINGILANIGKD 133 >gi|325068837|ref|ZP_08127510.1| NusB antitermination factor [Actinomyces oris K20] Length = 163 Score = 120 bits (303), Expect = 4e-26, Method: Composition-based stats. Identities = 28/138 (20%), Positives = 58/138 (42%), Gaps = 5/138 (3%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 R AR A++ L++ D G + E E ++ V S + R I++G Sbjct: 23 RTKARRRAIEILFEADQRGMLSDEGAEELRSFAQLR----AVSSANHTEAPAYTREILNG 78 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135 V D +D I + + W+ R+ + +I R E++ V V + E + ++ Sbjct: 79 VCDHLDDVDETIQTY-AQGWTLGRMPAVDRAIARVATWEIVYNDEVDAPVAVDEAMTLSR 137 Query: 136 DFFYGDEPKFINAVLDKV 153 + P+++ +L ++ Sbjct: 138 MLSTDESPRYLGGLLGRI 155 >gi|254373311|ref|ZP_04988799.1| N utilisation substance protein B [Francisella tularensis subsp. novicida GA99-3549] gi|254374776|ref|ZP_04990257.1| N utilization substance protein B [Francisella novicida GA99-3548] gi|151571037|gb|EDN36691.1| N utilisation substance protein B [Francisella novicida GA99-3549] gi|151572495|gb|EDN38149.1| N utilization substance protein B [Francisella novicida GA99-3548] Length = 141 Score = 120 bits (303), Expect = 4e-26, Method: Composition-based stats. Identities = 44/153 (28%), Positives = 69/153 (45%), Gaps = 13/153 (8%) Query: 10 LKLSHR-RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEW 68 +K + R R ARL AVQALYQ I + +E+ +Y + + D + Sbjct: 1 MKTTARARNNARLYAVQALYQKKIADNTFSELKVQYYA----------DNADRHYTDWDL 50 Query: 69 FRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIIS 128 F +I V + ID I ++ + ++L+ + ELIEC P +VII Sbjct: 51 FYRLIDAVKTNQDTIDKYIKENSNNG--VESINYVDYAVLQVAIAELIECLENPYQVIIK 108 Query: 129 EYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKR 161 EYV I + + KFINAVL +++ + Sbjct: 109 EYVEICYSMGTEEGYKFINAVLQNLAKSIRGEE 141 >gi|114800202|ref|YP_760752.1| transcription antitermination factor NusB [Hyphomonas neptunium ATCC 15444] gi|119390777|sp|Q0C0J1|NUSB_HYPNA RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|114740376|gb|ABI78501.1| transcription antitermination factor NusB [Hyphomonas neptunium ATCC 15444] Length = 154 Score = 120 bits (303), Expect = 5e-26, Method: Composition-based stats. Identities = 45/136 (33%), Positives = 68/136 (50%), Gaps = 3/136 (2%) Query: 24 VQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHI 83 VQALY+++ S I E+ R + D + F+ I++ V++ + I Sbjct: 22 VQALYEMEQTEKSARATIREFMEDRLGLGPDGTPVE---DADPDLFKSIVNSVVEHQAKI 78 Query: 84 DLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEP 143 D I + L E W +RLD + ++LRAG E I + +I+SEYV +AHDFF + Sbjct: 79 DTAILARLAEGWKLTRLDATMRALLRAGAAEFIAHQELSDAIILSEYVSLAHDFFDEGDA 138 Query: 144 KFINAVLDKVSRKEEI 159 KF NAVL + R Sbjct: 139 KFANAVLQNMGRDLRA 154 >gi|297243390|ref|ZP_06927323.1| transcription termination factor [Gardnerella vaginalis AMD] gi|296888637|gb|EFH27376.1| transcription termination factor [Gardnerella vaginalis AMD] Length = 160 Score = 120 bits (303), Expect = 5e-26, Method: Composition-based stats. Identities = 32/144 (22%), Positives = 59/144 (40%), Gaps = 12/144 (8%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 R AR A+ LY+ D ++ E E E+ I+ G Sbjct: 3 RSTARKRALNTLYEADEKNQHILSLLEERVK-----------EPGAQTPLPEYAIEIVRG 51 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135 V +R+ ID ++ + W R+ +I +ILR V E++ +P +V I E + +A Sbjct: 52 VGERRNRIDKTLNRY-STGWKVGRMAVIDRNILRIAVWEMLLNDEIPDKVAIDEAIALAK 110 Query: 136 DFFYGDEPKFINAVLDKVSRKEEI 159 + + FI+ +L + ++ Sbjct: 111 MYSDDEAIAFIHGLLSAIMADKDA 134 >gi|189184153|ref|YP_001937938.1| transcription antitermination protein NusB [Orientia tsutsugamushi str. Ikeda] gi|189180924|dbj|BAG40704.1| N utilization substance protein B [Orientia tsutsugamushi str. Ikeda] Length = 162 Score = 120 bits (303), Expect = 5e-26, Method: Composition-based stats. Identities = 46/147 (31%), Positives = 75/147 (51%), Gaps = 6/147 (4%) Query: 14 HRRGIARLAAVQALYQIDIIGCSTTE------IISEYETYRFCADTELDVESVYLHVDLE 67 + + I R+A++Q +Y I+ T II+ Y+ D ELD + Sbjct: 9 NTKTITRIASIQGVYSYQILDSEPTIDSIIDFIITYYKDKSSLEDLELDSAIPCFKLRTN 68 Query: 68 WFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVII 127 + +++ +D + ID++ISS L + W L +IL SILR EL S P +V+I Sbjct: 69 YLTKLVNETIDNLETIDMIISSYLADNWQIKDLHLILLSILRVATCELKFFTSTPYKVVI 128 Query: 128 SEYVCIAHDFFYGDEPKFINAVLDKVS 154 +E+ IA DF E F+N++L+K+S Sbjct: 129 NEFTNIASDFVKDSEIGFVNSLLEKIS 155 >gi|295093397|emb|CBK82488.1| transcription antitermination factor NusB [Coprococcus sp. ART55/1] Length = 159 Score = 120 bits (303), Expect = 5e-26, Method: Composition-based stats. Identities = 35/158 (22%), Positives = 69/158 (43%), Gaps = 4/158 (2%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVY---LHVDLEWFRVI 72 R R + ++ ++ + ++ E D +Y + D ++ Sbjct: 3 RRDIRDRIFKIVFTLEFNDAEGMQDQLDFAFDPEMPGDEEDDPLLYGIVSNEDRDYITTK 62 Query: 73 IHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVC 132 + ++ +K ID +IS ++E W R+ +ILR GV E+ S+P +V I+E V Sbjct: 63 VKNIISKKAEIDEIISQ-ISEGWKLPRIGKEELAILRLGVYEVKYDESIPEKVAINEAVE 121 Query: 133 IAHDFFYGDEPKFINAVLDKVSRKEEIKRSGCVSAITQ 170 +A + KF+NA+L K+ ++ K+ A + Sbjct: 122 LAKKYCDASASKFVNALLAKLVSGDKDKKESGADATAE 159 >gi|160902466|ref|YP_001568047.1| NusB antitermination factor [Petrotoga mobilis SJ95] gi|160360110|gb|ABX31724.1| NusB antitermination factor [Petrotoga mobilis SJ95] Length = 151 Score = 120 bits (303), Expect = 5e-26, Method: Composition-based stats. Identities = 38/157 (24%), Positives = 71/157 (45%), Gaps = 10/157 (6%) Query: 1 MTIQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESV 60 MT + + + + +R + R ++L+Q+ I I+ +E A E ES Sbjct: 1 MTNKRTRMNENIPKKRMM-RKLIFESLFQLSIKDVKLDNILFTFEKLNEQAHLE---ESY 56 Query: 61 YLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHS 120 YL + I + K D LI+ +E W R+ I +++R + ELI Sbjct: 57 YLEA-----KQYIEDIYKNKNEYDALINKY-SEGWRVERIGNIEKTVMRIFIYELINKKD 110 Query: 121 VPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKE 157 +PV+VI++E + + F+N ++DK++R + Sbjct: 111 IPVKVILNESTELTKTYATQKAAAFVNGIMDKIARSQ 147 >gi|309810676|ref|ZP_07704484.1| transcription antitermination factor NusB [Dermacoccus sp. Ellin185] gi|308435307|gb|EFP59131.1| transcription antitermination factor NusB [Dermacoccus sp. Ellin185] Length = 138 Score = 120 bits (302), Expect = 6e-26, Method: Composition-based stats. Identities = 30/139 (21%), Positives = 61/139 (43%), Gaps = 12/139 (8%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 R AR A+ L++ + + +++ E + V E+ V++ G Sbjct: 4 RTKARKRALDLLFEAEQREINAKDLLDERV-----------LAPVTPAPLPEYTAVLVRG 52 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135 V+D + I+ + + W+ R+ + ++LR E++ VP V +SE +A Sbjct: 53 VVDHWRTINEALETY-ARGWTLDRMPAVDRALLRVAAYEVLYVDDVPDGVAVSEAKNLAT 111 Query: 136 DFFYGDEPKFINAVLDKVS 154 + + P+FI +L K+S Sbjct: 112 ELSTDNSPQFIGGLLTKLS 130 >gi|270290385|ref|ZP_06196610.1| transcription antitermination factor NusB [Pediococcus acidilactici 7_4] gi|270281166|gb|EFA26999.1| transcription antitermination factor NusB [Pediococcus acidilactici 7_4] Length = 134 Score = 120 bits (302), Expect = 6e-26, Method: Composition-based stats. Identities = 32/145 (22%), Positives = 56/145 (38%), Gaps = 11/145 (7%) Query: 12 LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71 +S R R +A + ++ + + E + + F D + Sbjct: 1 MSLNRHQMRESAFKMIFAQSVNPDADPEELKKQVLEEFHETDVAD----------PFLDN 50 Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131 ++ GV + I+ I L W+ +RL IL+ G E+ VP V I+E + Sbjct: 51 LVTGVQENVSSINETIGKELKAGWTVNRLANPDRVILQIGTYEIKHT-EVPNNVAINEAL 109 Query: 132 CIAHDFFYGDEPKFINAVLDKVSRK 156 +A + KFIN VL V++ Sbjct: 110 ELAKKYTDEKARKFINGVLSNVAKD 134 >gi|118497958|ref|YP_899008.1| transcription termination factor [Francisella tularensis subsp. novicida U112] gi|194323181|ref|ZP_03056965.1| transcription antitermination factor NusB [Francisella tularensis subsp. novicida FTE] gi|118423864|gb|ABK90254.1| transcription termination factor [Francisella novicida U112] gi|194322545|gb|EDX20025.1| transcription antitermination factor NusB [Francisella tularensis subsp. novicida FTE] Length = 141 Score = 120 bits (302), Expect = 6e-26, Method: Composition-based stats. Identities = 44/153 (28%), Positives = 69/153 (45%), Gaps = 13/153 (8%) Query: 10 LKLSHR-RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEW 68 +K + R R ARL AVQALYQ I + +E+ +Y + + D + Sbjct: 1 MKTTARARNNARLYAVQALYQKKIADNTFSELKIQYYA----------DNADRHYTDWDL 50 Query: 69 FRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIIS 128 F +I V + ID I ++ + ++L+ + ELIEC P +VII Sbjct: 51 FYRLIDAVKTNQDTIDKYIKENSNNG--VESINYVDYAVLQVAIAELIECLENPYQVIIK 108 Query: 129 EYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKR 161 EYV I + + KFINAVL +++ + Sbjct: 109 EYVEICYSMGTEEGYKFINAVLQNLAKSIRGEE 141 >gi|124005043|ref|ZP_01689885.1| NusB antitermination factor [Microscilla marina ATCC 23134] gi|123989295|gb|EAY28856.1| NusB antitermination factor [Microscilla marina ATCC 23134] Length = 462 Score = 120 bits (302), Expect = 7e-26, Method: Composition-based stats. Identities = 40/160 (25%), Positives = 79/160 (49%), Gaps = 6/160 (3%) Query: 9 DLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEW 68 DL S R + + AV+ + I + + +E + EL S D+ + Sbjct: 299 DLSWSENRKVVQSMAVKTIKAI-MGDTEEEDGDAEETEITINKNFELSPLSKNWDEDVVF 357 Query: 69 FRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIIS 128 ++ + + ++ Q + +I+ T+ W RL +I IL+ + E+I +S+PV+V I+ Sbjct: 358 YKNLYNFNVEGNQRYEDIIAKK-TKNWDIERLALIDKVILKMAICEMINFYSIPVKVTIN 416 Query: 129 EYVCIAHDFFYGDEPKFINAVLDKVSR----KEEIKRSGC 164 EY+ +A + KF+N +LD +++ + +IK+SG Sbjct: 417 EYIELAKTYSTPKSKKFVNGLLDSIAQDLIEQGDIKKSGR 456 >gi|148284859|ref|YP_001248949.1| transcription antitermination protein NusB [Orientia tsutsugamushi str. Boryong] gi|146740298|emb|CAM80679.1| N utilization substance protein B [Orientia tsutsugamushi str. Boryong] Length = 162 Score = 120 bits (301), Expect = 7e-26, Method: Composition-based stats. Identities = 46/147 (31%), Positives = 75/147 (51%), Gaps = 6/147 (4%) Query: 14 HRRGIARLAAVQALYQIDIIGCSTTE------IISEYETYRFCADTELDVESVYLHVDLE 67 + + I R+A++Q +Y I+ T II+ Y+ D ELD + Sbjct: 9 NTKTITRIASIQGVYSYQILDSEPTIDSIIDFIITYYKDKSSLEDLELDSAIPCFKLRTN 68 Query: 68 WFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVII 127 + +++ +D + ID++ISS L + W L +IL SILR EL S P +V+I Sbjct: 69 YLTKLVNETIDNLETIDMIISSYLADNWQIKDLHLILLSILRVATCELKFFTSTPYKVVI 128 Query: 128 SEYVCIAHDFFYGDEPKFINAVLDKVS 154 +E+ IA DF E F+N++L+K+S Sbjct: 129 NEFTNIASDFVKESEIGFVNSLLEKIS 155 >gi|208779634|ref|ZP_03246979.1| transcription antitermination factor NusB [Francisella novicida FTG] gi|208744595|gb|EDZ90894.1| transcription antitermination factor NusB [Francisella novicida FTG] Length = 141 Score = 120 bits (301), Expect = 8e-26, Method: Composition-based stats. Identities = 44/153 (28%), Positives = 69/153 (45%), Gaps = 13/153 (8%) Query: 10 LKLSHR-RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEW 68 +K + R R ARL AVQALYQ I + +E+ +Y + + D + Sbjct: 1 MKTTARARNNARLYAVQALYQKKIADNTFSELKIQYYA----------DNADRHYTDWDL 50 Query: 69 FRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIIS 128 F +I V + ID I ++ + ++L+ + ELIEC P +VII Sbjct: 51 FYRLIDAVKTNQDTIDKYIKENSNNG--VESINYVDYAVLQVAIAELIECFENPYQVIIK 108 Query: 129 EYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKR 161 EYV I + + KFINAVL +++ + Sbjct: 109 EYVEICYSMGTEEGYKFINAVLQNLAKSIRGEE 141 >gi|42520134|ref|NP_966049.1| N utilization substance protein B, putative [Wolbachia endosymbiont of Drosophila melanogaster] gi|58698971|ref|ZP_00373826.1| transcription antitermination factor NusB [Wolbachia endosymbiont of Drosophila ananassae] gi|225630058|ref|YP_002726849.1| N utilization substance protein B, putative [Wolbachia sp. wRi] gi|42409871|gb|AAS13983.1| N utilization substance protein B, putative [Wolbachia endosymbiont of Drosophila melanogaster] gi|58534511|gb|EAL58655.1| transcription antitermination factor NusB [Wolbachia endosymbiont of Drosophila ananassae] gi|225592039|gb|ACN95058.1| N utilization substance protein B, putative [Wolbachia sp. wRi] Length = 160 Score = 120 bits (301), Expect = 8e-26, Method: Composition-based stats. Identities = 46/161 (28%), Positives = 75/161 (46%), Gaps = 3/161 (1%) Query: 3 IQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYL 62 +++ D K +R AR AVQ Y +G + + E + + D+ Sbjct: 1 MEEKPVDKKWRIKRSTARFLAVQIAYSNIFVGYNKSTFKLENCELKDYINKLKDIFECE- 59 Query: 63 HVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVP 122 + ++ +++ V+ + D +I S L WS SRL++I SILR + EL C P Sbjct: 60 EFEHQFLENLLYKVIKSSEEYDKIIESYLHPSWSLSRLNLISLSILRVAICELANC-DTP 118 Query: 123 VEVIISEYVCIAHDFFY-GDEPKFINAVLDKVSRKEEIKRS 162 V V+I+EY IA D E FIN +LDK ++ ++ Sbjct: 119 VPVVINEYTNIASDLLDKPSEIGFINGLLDKAKDAVKLNKN 159 >gi|317132176|ref|YP_004091490.1| NusB antitermination factor [Ethanoligenens harbinense YUAN-3] gi|315470155|gb|ADU26759.1| NusB antitermination factor [Ethanoligenens harbinense YUAN-3] Length = 136 Score = 120 bits (301), Expect = 8e-26, Method: Composition-based stats. Identities = 34/144 (23%), Positives = 61/144 (42%), Gaps = 13/144 (9%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 R AR A+ +++ + +EI+ +L V++ + + ++ G Sbjct: 3 RREAREQALCLVFEGLFKEENVSEIL------------DLAVQAREEFLVDTFAEMLATG 50 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135 V D + ID I W+ SRL ++ ++LR EL+ P V I+E V +A Sbjct: 51 VYDHRDDIDRKIEQY-AIGWTKSRLSRVVLTVLRIAFFELLYEQDTPDSVAINEAVELAK 109 Query: 136 DFFYGDEPKFINAVLDKVSRKEEI 159 + + F+N VL R E+ Sbjct: 110 KYGGDGDSAFVNGVLGAFVRAEKA 133 >gi|317013425|gb|ADU80861.1| transcription antitermination protein NusB [Helicobacter pylori Gambia94/24] Length = 138 Score = 120 bits (301), Expect = 9e-26, Method: Composition-based stats. Identities = 40/146 (27%), Positives = 66/146 (45%), Gaps = 13/146 (8%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 R AR A V+ LY + +I S + + +L + + +G Sbjct: 4 RTQARGAVVELLYAFESGNEEIKKIASSMLEEKKIKNNQL-----------AFALSLFNG 52 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135 V++R ID LI L + W F RL + +ILR G E+ +II+E + + Sbjct: 53 VLERINEIDALIEPHL-KDWDFKRLGSMEKAILRLGAYEIGFTP-TQNPIIINECIELGK 110 Query: 136 DFFYGDEPKFINAVLDKVSRKEEIKR 161 + + PKF+NA+LD +S+K + K Sbjct: 111 LYAEPNTPKFLNAILDSLSKKLDQKP 136 >gi|291296745|ref|YP_003508143.1| NusB antitermination factor [Meiothermus ruber DSM 1279] gi|290471704|gb|ADD29123.1| NusB antitermination factor [Meiothermus ruber DSM 1279] Length = 152 Score = 120 bits (301), Expect = 9e-26, Method: Composition-based stats. Identities = 37/155 (23%), Positives = 72/155 (46%), Gaps = 6/155 (3%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 R AR A + L++ + G E ++ T + V H L + + ++ G Sbjct: 2 RRKARELAFKVLFEHAVGGVPL-EAAWQHATQEVEPEEADQEADVLDHEGLLFAQRLVQG 60 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135 ++Q +D ++S + E WSFS++ ++LR E++ P +I V IA Sbjct: 61 YAAQQQTVDEALASTI-EGWSFSQMAKTDLAVLRLATYEMLFEP-TPYAPLIEVAVKIAK 118 Query: 136 DFFYGDEPKFINAVLDKVSRKEEIKRSGCVSAITQ 170 + D +F+N VL ++ ++ E +G +SA+ + Sbjct: 119 RYGGEDSGRFVNGVLARLLKRIE---AGELSAVAK 150 >gi|295100829|emb|CBK98374.1| transcription antitermination factor NusB [Faecalibacterium prausnitzii L2-6] Length = 144 Score = 119 bits (300), Expect = 9e-26, Method: Composition-based stats. Identities = 29/142 (20%), Positives = 59/142 (41%), Gaps = 13/142 (9%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 R AR A + E + + D E V+ + + ++ Sbjct: 7 RREARENAFLLAFSQTFGDIPLQEALDNHHEC----DEEHPVDV--------FGQRLLRA 54 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135 + +D LIS+ L W+ RL + ++LR G+ E++ V+I+E V + Sbjct: 55 YYEHSAEVDDLISAHL-RNWTMERLPRVSLTVLRLGLAEMLYGDEKKPGVVINEAVELTK 113 Query: 136 DFFYGDEPKFINAVLDKVSRKE 157 + ++ +F+N +L V+R++ Sbjct: 114 KYGADEDYQFVNGLLGTVAREQ 135 >gi|317176809|dbj|BAJ54598.1| transcription antitermination protein NusB [Helicobacter pylori F16] Length = 138 Score = 119 bits (300), Expect = 1e-25, Method: Composition-based stats. Identities = 39/146 (26%), Positives = 65/146 (44%), Gaps = 13/146 (8%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 R AR A V+ LY + +I S + + +L + + +G Sbjct: 4 RTQARGAVVELLYAFESGNEEIKKIASSMLEEKKIKNNQL-----------AFALSLFNG 52 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135 V+++ ID LI L + W F RL + +ILR G E+ +II+E + + Sbjct: 53 VLEKLNEIDALIEPHL-KDWDFKRLGSMEKAILRLGTYEIGFTP-TQNPIIINECIELGK 110 Query: 136 DFFYGDEPKFINAVLDKVSRKEEIKR 161 + + PKF+NA+LD +S+K K Sbjct: 111 LYAEPNTPKFLNAILDSLSKKLTQKP 136 >gi|89256034|ref|YP_513396.1| N utilisation substance protein B [Francisella tularensis subsp. holarctica LVS] gi|115314512|ref|YP_763235.1| N utilization substance protein B [Francisella tularensis subsp. holarctica OSU18] gi|156502045|ref|YP_001428109.1| transcription antitermination factor [Francisella tularensis subsp. holarctica FTNF002-00] gi|167010215|ref|ZP_02275146.1| transcription antitermination factor NusB [Francisella tularensis subsp. holarctica FSC200] gi|254367376|ref|ZP_04983402.1| N utilisation substance protein B [Francisella tularensis subsp. holarctica 257] gi|290953937|ref|ZP_06558558.1| transcription antitermination factor [Francisella tularensis subsp. holarctica URFT1] gi|295312686|ref|ZP_06803431.1| transcription antitermination factor [Francisella tularensis subsp. holarctica URFT1] gi|89143865|emb|CAJ79083.1| N utilisation substance protein B [Francisella tularensis subsp. holarctica LVS] gi|115129411|gb|ABI82598.1| N utilization substance protein B [Francisella tularensis subsp. holarctica OSU18] gi|134253192|gb|EBA52286.1| N utilisation substance protein B [Francisella tularensis subsp. holarctica 257] gi|156252648|gb|ABU61154.1| transcription antitermination factor [Francisella tularensis subsp. holarctica FTNF002-00] Length = 141 Score = 119 bits (300), Expect = 1e-25, Method: Composition-based stats. Identities = 44/153 (28%), Positives = 69/153 (45%), Gaps = 13/153 (8%) Query: 10 LKLSHR-RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEW 68 +K + R R ARL AVQALYQ I + +E+ +Y + + D + Sbjct: 1 MKTTARARNNARLYAVQALYQKKIADNTFSELKIQYYA----------DNADRHYTDWDL 50 Query: 69 FRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIIS 128 F +I V + ID I + ++ + +L+ + ELIEC P +VII Sbjct: 51 FYRLIDAVKTNQDTIDKYIKENSSNG--VESINYVDYVVLQVAIAELIECLENPYQVIIK 108 Query: 129 EYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKR 161 EYV I + + KFINAVL +++ + Sbjct: 109 EYVEICYSMGTEEGYKFINAVLQNLAKSIRSEE 141 >gi|187931389|ref|YP_001891373.1| transcription antitermination factor NusB [Francisella tularensis subsp. mediasiatica FSC147] gi|187712298|gb|ACD30595.1| transcription antitermination factor NusB [Francisella tularensis subsp. mediasiatica FSC147] Length = 141 Score = 119 bits (299), Expect = 1e-25, Method: Composition-based stats. Identities = 44/153 (28%), Positives = 70/153 (45%), Gaps = 13/153 (8%) Query: 10 LKLSHR-RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEW 68 +K + R R ARL AVQALYQ I + +E+ +Y + + D + Sbjct: 1 MKTTARARNNARLYAVQALYQKKIADNTFSELKIQYYA----------DNADRHYTDWDL 50 Query: 69 FRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIIS 128 F +I V + ID I + ++ + ++L+ + ELIEC P +VII Sbjct: 51 FYRLIDAVKTNQDTIDKYIKENSSNG--VESINYVDYAVLQVAIAELIECLENPYQVIIK 108 Query: 129 EYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKR 161 EYV I + + KFINAVL +++ + Sbjct: 109 EYVGICYSMGTEEGYKFINAVLQNLAKSIRGEE 141 >gi|295397759|ref|ZP_06807828.1| transcription antitermination factor NusB [Aerococcus viridans ATCC 11563] gi|294973971|gb|EFG49729.1| transcription antitermination factor NusB [Aerococcus viridans ATCC 11563] Length = 217 Score = 119 bits (299), Expect = 1e-25, Method: Composition-based stats. Identities = 29/104 (27%), Positives = 50/104 (48%), Gaps = 2/104 (1%) Query: 67 EWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHS--VPVE 124 + R ++ GV + ID +I + + WS RL+++ ILR V EL+ VP Sbjct: 92 AYLRTLVEGVKANRFEIDQMIDNHIHGNWSVQRLELVNLQILRVAVFELLFTDEETVPRV 151 Query: 125 VIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRSGCVSAI 168 V ++E + +A + KFIN +L V + + +G V + Sbjct: 152 VAVNEAIELAKLYSDDRARKFINGILSNVLAELKANANGDVKPV 195 >gi|83816060|ref|YP_444173.1| transcription antitermination factor NusB [Salinibacter ruber DSM 13855] gi|294505831|ref|YP_003569889.1| N utilization substance protein B homolog [Salinibacter ruber M8] gi|119390817|sp|Q2S6K8|NUSB_SALRD RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|83757454|gb|ABC45567.1| transcription antitermination factor NusB [Salinibacter ruber DSM 13855] gi|294342159|emb|CBH22937.1| N utilization substance protein B homolog [Salinibacter ruber M8] Length = 160 Score = 119 bits (299), Expect = 1e-25, Method: Composition-based stats. Identities = 26/140 (18%), Positives = 49/140 (35%), Gaps = 11/140 (7%) Query: 14 HRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVII 73 R AR ++ LY + + + D ++ + Sbjct: 2 SSRRDAREQVMKTLYANEQTDGDAEQALHALVRVPLDEDPSTR----------DFAEHLF 51 Query: 74 HGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCI 133 + + D +I + W R+ I S+LR EL++ VP +V + E + I Sbjct: 52 RETLKTMEEADEIIEKH-ADNWEIHRIAAIDRSLLRMATTELLKFEEVPPKVSVDEAIEI 110 Query: 134 AHDFFYGDEPKFINAVLDKV 153 A + F+N V+D + Sbjct: 111 AKRYSTPRSGTFVNGVIDAI 130 >gi|308183797|ref|YP_003927930.1| transcription antitermination protein NusB [Helicobacter pylori SJM180] gi|308059717|gb|ADO01613.1| transcription antitermination protein NusB [Helicobacter pylori SJM180] Length = 138 Score = 119 bits (299), Expect = 1e-25, Method: Composition-based stats. Identities = 39/146 (26%), Positives = 65/146 (44%), Gaps = 13/146 (8%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 R AR A V+ LY + +I S + + +L + + +G Sbjct: 4 RTQARGAVVELLYAFESGNEGIKKIASSMLEEKKIKNNQL-----------AFALSLFNG 52 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135 V+++ ID LI L + W F RL + +ILR G E+ +II+E + + Sbjct: 53 VLEKINEIDALIEPHL-KDWDFKRLGSMEKAILRLGAYEIGFTP-TQNPIIINECIELGK 110 Query: 136 DFFYGDEPKFINAVLDKVSRKEEIKR 161 + + PKF+NA+LD +S+K K Sbjct: 111 LYAEPNTPKFLNAILDSLSKKLAQKP 136 >gi|310779261|ref|YP_003967594.1| NusB antitermination factor [Ilyobacter polytropus DSM 2926] gi|309748584|gb|ADO83246.1| NusB antitermination factor [Ilyobacter polytropus DSM 2926] Length = 132 Score = 119 bits (299), Expect = 2e-25, Method: Composition-based stats. Identities = 31/141 (21%), Positives = 61/141 (43%), Gaps = 11/141 (7%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 R AR + L++ ++ TE++ ++ + + E+ +G Sbjct: 3 RKTAREEFFKLLFEAELNEVDATEVLEDFIS---------RDDFKLSKAGQEFLERYANG 53 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135 V + K I I +T W+ R+ + ++L+ EL++ V E++I+E V +A Sbjct: 54 VTENKAEIQRTIDENMT-GWTLDRIGNVERTLLKFATYELLK-EDVGYEIVINEIVELAK 111 Query: 136 DFFYGDEPKFINAVLDKVSRK 156 + +FIN VL K+ K Sbjct: 112 KYGEEKSHEFINGVLAKIVNK 132 >gi|320534351|ref|ZP_08034838.1| transcription antitermination factor NusB [Actinomyces sp. oral taxon 171 str. F0337] gi|320133433|gb|EFW25894.1| transcription antitermination factor NusB [Actinomyces sp. oral taxon 171 str. F0337] Length = 163 Score = 119 bits (299), Expect = 2e-25, Method: Composition-based stats. Identities = 30/139 (21%), Positives = 62/139 (44%), Gaps = 7/139 (5%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLE-WFRVIIH 74 R AR A++ L++ D G ++E E ++ +L S H + + R I++ Sbjct: 23 RTKARRRAIEILFEADQRGMLSSEGTEELRSFA-----QLRAVSSANHTEAPLYTREILN 77 Query: 75 GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134 GV D ID I + + W+ R+ + +I R E++ V V + E + ++ Sbjct: 78 GVCDHLADIDETIQTY-AQGWTLGRMPAVDRAIARVATWEIVYNDDVDAPVGVDEAMTLS 136 Query: 135 HDFFYGDEPKFINAVLDKV 153 + P+++ +L ++ Sbjct: 137 RMLSTDESPRYLGGLLGRI 155 >gi|167750987|ref|ZP_02423114.1| hypothetical protein EUBSIR_01972 [Eubacterium siraeum DSM 15702] gi|167656166|gb|EDS00296.1| hypothetical protein EUBSIR_01972 [Eubacterium siraeum DSM 15702] gi|291557466|emb|CBL34583.1| transcription antitermination factor NusB [Eubacterium siraeum V10Sc8a] Length = 143 Score = 119 bits (299), Expect = 2e-25, Method: Composition-based stats. Identities = 34/147 (23%), Positives = 66/147 (44%), Gaps = 14/147 (9%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 R R AA+ L+Q+ + + EI+ E + + E + +SV + G Sbjct: 8 RHEMREAALLILFQMKLNPETLDEIL---EDCKESFEMEYNSQSV----------KLAKG 54 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135 V + + ++ +I S + R+ I +I++ + E+ C SVP +V I+E + A Sbjct: 55 VAEHEDELNGIIESY-SPSRKLDRISYINLAIMKIALYEMKYCPSVPDKVAINEAIEFAK 113 Query: 136 DFFYGDEPKFINAVLDKVSRKEEIKRS 162 ++ + +FIN VL+ + K Sbjct: 114 EYADKTDVRFINGVLNSYYKDNPTKEQ 140 >gi|329946651|ref|ZP_08294063.1| transcription antitermination factor NusB [Actinomyces sp. oral taxon 170 str. F0386] gi|328526462|gb|EGF53475.1| transcription antitermination factor NusB [Actinomyces sp. oral taxon 170 str. F0386] Length = 163 Score = 119 bits (298), Expect = 2e-25, Method: Composition-based stats. Identities = 27/138 (19%), Positives = 56/138 (40%), Gaps = 5/138 (3%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 R AR A++ L++ D G + E ++ V S + R I+ G Sbjct: 23 RTKARRRAIEILFEADQRGMLISGDAEELRSFAQLR----AVSSANHTEAPAYTREILDG 78 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135 V D +D I + + W+ R+ + +I R E++ V V + E + ++ Sbjct: 79 VCDHLADVDETIQTY-AQGWTLGRMPAVDRAIARVATWEIVYNDDVDAPVAVDEAMTLSR 137 Query: 136 DFFYGDEPKFINAVLDKV 153 + P+++ +L ++ Sbjct: 138 MLSTDESPRYLGGLLGRI 155 >gi|125624663|ref|YP_001033146.1| transcription termination protein nusB [Lactococcus lactis subsp. cremoris MG1363] gi|124493471|emb|CAL98448.1| transcription termination protein nusB [Lactococcus lactis subsp. cremoris MG1363] gi|300071455|gb|ADJ60855.1| transcription termination protein nusB [Lactococcus lactis subsp. cremoris NZ9000] Length = 325 Score = 119 bits (298), Expect = 2e-25, Method: Composition-based stats. Identities = 30/129 (23%), Positives = 61/129 (47%), Gaps = 1/129 (0%) Query: 29 QIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLIS 88 Q+ + +S+ D + E+F ++ GV+++K+ +++ IS Sbjct: 198 QLQQAETTAESHLSDLLKETKHFVLNYDNDRAEDLEAPEYFTQLVDGVLEKKEDLEINIS 257 Query: 89 SCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINA 148 L + WSFSRL ++ +IL+ E++ P V ++E + ++ DF +FIN Sbjct: 258 KYLAKNWSFSRLTLVEQAILQVSTYEILFT-DTPNVVAVNEAIELSKDFSDEKSSRFING 316 Query: 149 VLDKVSRKE 157 VL +++ Sbjct: 317 VLTNFLKED 325 >gi|163816787|ref|ZP_02208150.1| hypothetical protein COPEUT_02977 [Coprococcus eutactus ATCC 27759] gi|158448044|gb|EDP25039.1| hypothetical protein COPEUT_02977 [Coprococcus eutactus ATCC 27759] Length = 153 Score = 119 bits (298), Expect = 2e-25, Method: Composition-based stats. Identities = 39/153 (25%), Positives = 67/153 (43%), Gaps = 10/153 (6%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYL------HVDLEWF 69 R R + ++ + T E + E F + D E + D E+ Sbjct: 3 RREIRDKIFKIVFTAEFN---TQEEMKEQLELAFDTEMPGDEEDDPMLYASVSEKDKEYI 59 Query: 70 RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISE 129 + ++ K ID IS ++E W R+ +ILR GV E++ ++P +V I+E Sbjct: 60 TDKVMDILAHKDAIDNTISE-ISEGWKLPRIGKEELAILRLGVYEVVYDETIPEKVAINE 118 Query: 130 YVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRS 162 V +A + KF+NA+L K+ +KEE + Sbjct: 119 AVELAKKYCDVSASKFVNALLAKLVKKEESGNA 151 >gi|326329789|ref|ZP_08196109.1| transcription antitermination factor NusB [Nocardioidaceae bacterium Broad-1] gi|325952375|gb|EGD44395.1| transcription antitermination factor NusB [Nocardioidaceae bacterium Broad-1] Length = 137 Score = 119 bits (298), Expect = 2e-25, Method: Composition-based stats. Identities = 36/144 (25%), Positives = 64/144 (44%), Gaps = 15/144 (10%) Query: 13 SHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVI 72 + R AR A+ L+ + G S +++ + + + I Sbjct: 5 ATARTKARKRALDLLFAAEARGLSAGDLLDQQIREGEVPNN-------------PFTVKI 51 Query: 73 IHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVC 132 + GV+ + ID LIS+ + W+ +R+ + ++LR GV EL++ V EV ISE Sbjct: 52 VRGVVAEAERIDALISAF-AKDWTLARMPAVDRNVLRIGVWELLDG-DVASEVAISEATA 109 Query: 133 IAHDFFYGDEPKFINAVLDKVSRK 156 + + D P F+N VL V++ Sbjct: 110 LVTELSTDDSPSFVNGVLAAVAKD 133 >gi|259507351|ref|ZP_05750251.1| N utilization substance protein B family protein (protein NusB) [Corynebacterium efficiens YS-314] gi|259165062|gb|EEW49616.1| N utilization substance protein B family protein (protein NusB) [Corynebacterium efficiens YS-314] Length = 167 Score = 119 bits (298), Expect = 2e-25, Method: Composition-based stats. Identities = 34/144 (23%), Positives = 59/144 (40%), Gaps = 7/144 (4%) Query: 24 VQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHI 83 + L++ + II + +T D + + E+ II+GV I Sbjct: 1 MDILFEAESRDVDPVAIIDDRKTLSNAVDPVVAPVA-------EYTEAIINGVAVELDTI 53 Query: 84 DLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEP 143 D L+S + + W RL + ++LR E++ VPV + E V IA + Sbjct: 54 DDLLSEHIADTWLLERLPSVDRAVLRVACWEMLYNPDVPVTTAVVEAVEIASQYSTDKAG 113 Query: 144 KFINAVLDKVSRKEEIKRSGCVSA 167 +INA LD ++ K + R + Sbjct: 114 AYINATLDNMASKVDELRERAANP 137 >gi|257453620|ref|ZP_05618910.1| NusB antitermination factor [Enhydrobacter aerosaccus SK60] gi|257449078|gb|EEV24031.1| NusB antitermination factor [Enhydrobacter aerosaccus SK60] Length = 186 Score = 119 bits (298), Expect = 2e-25, Method: Composition-based stats. Identities = 34/145 (23%), Positives = 65/145 (44%), Gaps = 13/145 (8%) Query: 17 GIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGV 76 AR VQ LY+ + G + EI + + E+ V L ++ ++ + Sbjct: 29 RKARRFVVQGLYEWLLTGNPSHEIEAHTRS-----------ENAMHTVHLGYYHELLSKI 77 Query: 77 MDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHD 136 +++ + I S L W+ RLD + ++L G E+ + VP +V+I E + + Sbjct: 78 IEQSDDLIAYIDSLLNRPWT--RLDKVEQAVLLVGAYEMKQHLEVPYKVVIDEAIQLNTH 135 Query: 137 FFYGDEPKFINAVLDKVSRKEEIKR 161 F D K I+ V+DK+++ + Sbjct: 136 FGSSDGYKMIHVVMDKIAKDARMPE 160 >gi|116511490|ref|YP_808706.1| transcription termination factor [Lactococcus lactis subsp. cremoris SK11] gi|116107144|gb|ABJ72284.1| Transcription termination factor [Lactococcus lactis subsp. cremoris SK11] Length = 325 Score = 119 bits (298), Expect = 2e-25, Method: Composition-based stats. Identities = 30/129 (23%), Positives = 61/129 (47%), Gaps = 1/129 (0%) Query: 29 QIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLIS 88 Q+ + +S+ D + E+F ++ GV+++K+ +++ IS Sbjct: 198 QLQQAETTAESHLSDLLKETKHFVLNYDNDRAEDLEAPEYFTQLVDGVLEKKEDLEINIS 257 Query: 89 SCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINA 148 L + WSFSRL ++ +IL+ E++ P V ++E + ++ DF +FIN Sbjct: 258 KYLAKNWSFSRLTLVEQAILQVSTYEILFT-DTPNVVAVNEAIELSKDFSDEKSSRFING 316 Query: 149 VLDKVSRKE 157 VL +++ Sbjct: 317 VLTNFLKED 325 >gi|210134202|ref|YP_002300641.1| transcription antitermination protein NusB [Helicobacter pylori P12] gi|238055353|sp|B6JPA0|NUSB_HELP2 RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|210132170|gb|ACJ07161.1| N utilization substance protein B [Helicobacter pylori P12] Length = 138 Score = 119 bits (298), Expect = 2e-25, Method: Composition-based stats. Identities = 40/146 (27%), Positives = 65/146 (44%), Gaps = 13/146 (8%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 R AR A V+ LY + +I S + + +L + + +G Sbjct: 4 RTQARGAVVELLYAFESGNEEIKKIASSMLEEKKIKNNQL-----------AFALSLFNG 52 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135 V++R ID LI L + W F RL + +ILR G E+ +II+E + + Sbjct: 53 VLERINEIDALIEPHL-KDWDFKRLGSMEKAILRLGAYEIGFTP-TQNPIIINECIELGK 110 Query: 136 DFFYGDEPKFINAVLDKVSRKEEIKR 161 + + PKF+NA+LD +S+K K Sbjct: 111 LYAEPNTPKFLNAILDSLSKKLTQKP 136 >gi|15644635|ref|NP_206803.1| transcription antitermination protein NusB [Helicobacter pylori 26695] gi|7387970|sp|O24853|NUSB_HELPY RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|2313078|gb|AAD07074.1| predicted coding region HP0001 [Helicobacter pylori 26695] Length = 138 Score = 119 bits (298), Expect = 2e-25, Method: Composition-based stats. Identities = 39/146 (26%), Positives = 65/146 (44%), Gaps = 13/146 (8%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 R AR A V+ LY + +I S + + +L + + +G Sbjct: 4 RTQARGAVVELLYAFESGNEEIKKIASSMLEEKKIKNNQL-----------AFALSLFNG 52 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135 V+++ ID LI L + W F RL + +ILR G E+ +II+E + + Sbjct: 53 VLEKINEIDALIEPHL-KDWDFKRLGSMEKAILRLGAYEIGFTP-TQNPIIINECIELGK 110 Query: 136 DFFYGDEPKFINAVLDKVSRKEEIKR 161 + + PKF+NA+LD +S+K K Sbjct: 111 LYAEPNTPKFLNAILDSLSKKLTQKP 136 >gi|319956407|ref|YP_004167670.1| nusb antitermination factor [Nitratifractor salsuginis DSM 16511] gi|319418811|gb|ADV45921.1| NusB antitermination factor [Nitratifractor salsuginis DSM 16511] Length = 143 Score = 118 bits (297), Expect = 2e-25, Method: Composition-based stats. Identities = 36/140 (25%), Positives = 57/140 (40%), Gaps = 13/140 (9%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 R AR A V LY D+ + E + + E+ + G Sbjct: 4 RHQARRAVVGLLYAYDLGNDGIEKFSEEILESDKIRNKQ-----------REFSMRLFKG 52 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135 ++ ID I L E W +S++ + +ILR G E++ +II+E V +A Sbjct: 53 TIENLDKIDEEIQKHL-ESWDYSKIGKVEKAILRLGAYEIL-IEGTDRPIIINEAVELAK 110 Query: 136 DFFYGDEPKFINAVLDKVSR 155 + P+FIN VLD V + Sbjct: 111 ELADEKSPQFINGVLDAVGK 130 >gi|167770740|ref|ZP_02442793.1| hypothetical protein ANACOL_02086 [Anaerotruncus colihominis DSM 17241] gi|167667335|gb|EDS11465.1| hypothetical protein ANACOL_02086 [Anaerotruncus colihominis DSM 17241] Length = 161 Score = 118 bits (297), Expect = 2e-25, Method: Composition-based stats. Identities = 33/152 (21%), Positives = 60/152 (39%), Gaps = 14/152 (9%) Query: 15 RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74 +R +R A +++ S EII + R + + + Sbjct: 2 KRSESREQAFMLIFERSFKDESIDEIIEQAAIGRNLQVDD-------------YAYRLAS 48 Query: 75 GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134 V +D I+S ++KW +R+ + SILR + E+ +VP I+E V +A Sbjct: 49 DVCGNLPWLDEAIASY-SKKWKINRMSRVALSILRLSLWEIDHVDTVPAGASINEAVELA 107 Query: 135 HDFFYGDEPKFINAVLDKVSRKEEIKRSGCVS 166 + D+ F+N VL R+++ V Sbjct: 108 KKYGNDDDFSFVNGVLGAYVRRKDSSEQAGVE 139 >gi|288918217|ref|ZP_06412572.1| NusB antitermination factor [Frankia sp. EUN1f] gi|288350387|gb|EFC84609.1| NusB antitermination factor [Frankia sp. EUN1f] Length = 146 Score = 118 bits (297), Expect = 2e-25, Method: Composition-based stats. Identities = 29/102 (28%), Positives = 50/102 (49%), Gaps = 2/102 (1%) Query: 67 EWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVI 126 ++ ++ GV+ ID I+S + W+ R+ + +ILR VLEL VP V+ Sbjct: 23 DYASDLVEGVVAHLGDIDRHIASH-AQGWAIDRMPPVDRNILRIAVLELFWRTDVPDGVV 81 Query: 127 ISEYVCIAHDFFYGDEPKFINAVLDKVSRKE-EIKRSGCVSA 167 I E V +A P F+N +L + +++ ++ R G A Sbjct: 82 IDEAVRLAKTISTERSPAFVNGLLASLLQEKPQLLREGPEPA 123 >gi|207092122|ref|ZP_03239909.1| transcription antitermination protein NusB [Helicobacter pylori HPKX_438_AG0C1] gi|317011858|gb|ADU82466.1| transcription antitermination protein NusB [Helicobacter pylori Lithuania75] Length = 138 Score = 118 bits (297), Expect = 2e-25, Method: Composition-based stats. Identities = 41/146 (28%), Positives = 65/146 (44%), Gaps = 13/146 (8%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 R AR A V+ LY + +I S + + +L + + +G Sbjct: 4 RTQARGAVVELLYAFESGNEEIKKIASSMLEEKKIKNNQL-----------AFALSLFNG 52 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135 V++R ID LI L + W F RL + +ILR G E+ +II+E + + Sbjct: 53 VLERINEIDALIEPHL-KDWDFKRLGSMEKAILRLGAYEIGFTP-TQNPIIINECIELGK 110 Query: 136 DFFYGDEPKFINAVLDKVSRKEEIKR 161 + + PKF+NA+LD +SRK K Sbjct: 111 LYAEPNTPKFLNAILDSLSRKLAQKP 136 >gi|227542181|ref|ZP_03972230.1| transcription antitermination protein NusB [Corynebacterium glucuronolyticum ATCC 51866] gi|227182010|gb|EEI62982.1| transcription antitermination protein NusB [Corynebacterium glucuronolyticum ATCC 51866] Length = 342 Score = 118 bits (297), Expect = 3e-25, Method: Composition-based stats. Identities = 35/150 (23%), Positives = 58/150 (38%), Gaps = 9/150 (6%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 R AR A + L++ + E+ E + + R II G Sbjct: 13 RYKARRHAAEILFEAEARDIDPVEVTRTREELSHGTEP-------VTAPVRPYTREIIEG 65 Query: 76 VMDRKQHIDLLISSCLTE-KWSFSRLDMILCSILRAGVLELIEC-HSVPVEVIISEYVCI 133 V ID I L + W+F RL + ++LR EL+ +VP + +++ V + Sbjct: 66 VAVNLDLIDFAIERELADTDWTFDRLPGVDRAVLRVATWELLFNASNVPQKTAVTQAVEL 125 Query: 134 AHDFFYGDEPKFINAVLDKVSRKEEIKRSG 163 D P ++NAVLD + + E Sbjct: 126 VSQLSTDDSPAYVNAVLDAMWKNPESPADA 155 >gi|227488822|ref|ZP_03919138.1| transcription antitermination protein NusB [Corynebacterium glucuronolyticum ATCC 51867] gi|227091244|gb|EEI26556.1| transcription antitermination protein NusB [Corynebacterium glucuronolyticum ATCC 51867] Length = 342 Score = 118 bits (297), Expect = 3e-25, Method: Composition-based stats. Identities = 35/150 (23%), Positives = 58/150 (38%), Gaps = 9/150 (6%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 R AR A + L++ + E+ E + + R II G Sbjct: 13 RYKARRHAAEILFEAEARDIDPVEVTRTREELSHGPEP-------VTAPVRPYTREIIEG 65 Query: 76 VMDRKQHIDLLISSCLTE-KWSFSRLDMILCSILRAGVLELIEC-HSVPVEVIISEYVCI 133 V ID I L + W+F RL + ++LR EL+ +VP + +++ V + Sbjct: 66 VAVNLDLIDFAIERELADTDWTFDRLPGVDRAVLRVATWELLFNASNVPQKTAVTQAVEL 125 Query: 134 AHDFFYGDEPKFINAVLDKVSRKEEIKRSG 163 D P ++NAVLD + + E Sbjct: 126 VSQLSTDDSPAYVNAVLDAMWKNPESPADA 155 >gi|258645389|ref|ZP_05732858.1| transcription antitermination factor NusB [Dialister invisus DSM 15470] gi|260402739|gb|EEW96286.1| transcription antitermination factor NusB [Dialister invisus DSM 15470] Length = 133 Score = 118 bits (297), Expect = 3e-25, Method: Composition-based stats. Identities = 34/145 (23%), Positives = 61/145 (42%), Gaps = 17/145 (11%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 R AR A++ LY +I + A+ D+ + ++ Sbjct: 3 RSKAREHALKVLYAKEINPNT--------------AELSADISDALSEKGKSFSDFLVEQ 48 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLEL--IECHSVPVEVIISEYVCI 133 V + ID I L +KWS S+L+++ +ILR + E +VII+E V + Sbjct: 49 VQLHRDEIDGEIVRFL-KKWSLSQLNIVDKNILRIAIAEFNYTYEDKADRKVIINEAVEL 107 Query: 134 AHDFFYGDEPKFINAVLDKVSRKEE 158 A + + +FIN +L V+ ++ Sbjct: 108 AKVYGGENSYRFINGILSAVTGEKN 132 >gi|108562426|ref|YP_626742.1| transcription antitermination protein NusB [Helicobacter pylori HPAG1] gi|208433977|ref|YP_002265643.1| N utilization substance protein B [Helicobacter pylori G27] gi|217031745|ref|ZP_03437249.1| hypothetical protein HPB128_155g58 [Helicobacter pylori B128] gi|298737115|ref|YP_003729645.1| N utilization substance protein B [Helicobacter pylori B8] gi|308182189|ref|YP_003926316.1| transcription antitermination protein NusB [Helicobacter pylori PeCan4] gi|119390776|sp|Q1CVF4|NUSB_HELPH RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|238055475|sp|B5Z6D7|NUSB_HELPG RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|107836199|gb|ABF84068.1| N utilization substance protein B [Helicobacter pylori HPAG1] gi|208431906|gb|ACI26777.1| N utilization substance protein B [Helicobacter pylori G27] gi|216946592|gb|EEC25192.1| hypothetical protein HPB128_155g58 [Helicobacter pylori B128] gi|298356309|emb|CBI67181.1| N utilization substance protein B [Helicobacter pylori B8] gi|308064374|gb|ADO06266.1| transcription antitermination protein NusB [Helicobacter pylori PeCan4] gi|317179797|dbj|BAJ57583.1| transcription antitermination protein NusB [Helicobacter pylori F32] Length = 138 Score = 118 bits (296), Expect = 3e-25, Method: Composition-based stats. Identities = 40/146 (27%), Positives = 65/146 (44%), Gaps = 13/146 (8%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 R AR A V+ LY + +I S + + +L + + +G Sbjct: 4 RTQARGAVVELLYAFESGNEEIKKIASSMLEEKKIKNNQL-----------AFALSLFNG 52 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135 V++R ID LI L + W F RL + +ILR G E+ +II+E + + Sbjct: 53 VLERINEIDALIEPHL-KDWDFKRLGSMEKAILRLGAYEIGFTP-TQNPIIINECIELGK 110 Query: 136 DFFYGDEPKFINAVLDKVSRKEEIKR 161 + + PKF+NA+LD +S+K K Sbjct: 111 LYAEPNTPKFLNAILDSLSKKLAQKP 136 >gi|227496173|ref|ZP_03926479.1| transcription antitermination protein NusB [Actinomyces urogenitalis DSM 15434] gi|226834287|gb|EEH66670.1| transcription antitermination protein NusB [Actinomyces urogenitalis DSM 15434] Length = 155 Score = 118 bits (296), Expect = 3e-25, Method: Composition-based stats. Identities = 34/139 (24%), Positives = 57/139 (41%), Gaps = 6/139 (4%) Query: 16 RGIARLAAVQALYQIDIIGC-STTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74 R AR A++ L++ D G E E V S + R I+ Sbjct: 14 RTKARRRAIEILFEADQRGLLRAGEAAENLRALA----AERAVHSANHTEAPAYTREILT 69 Query: 75 GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134 GV D + ID I + ++ WS +R+ + +I R E++ V V V + E +A Sbjct: 70 GVADHLEQIDEHIETY-SQGWSLTRMPAVDRAIARVTTWEIVYNDDVDVPVALDEAQTLA 128 Query: 135 HDFFYGDEPKFINAVLDKV 153 D P+++ VL ++ Sbjct: 129 KMLSTDDSPRYLGGVLGRI 147 >gi|188526813|ref|YP_001909500.1| transcription antitermination protein NusB [Helicobacter pylori Shi470] gi|217033802|ref|ZP_03439227.1| hypothetical protein HP9810_877g6 [Helicobacter pylori 98-10] gi|254778739|ref|YP_003056844.1| transcription antitermination protein NusB [Helicobacter pylori B38] gi|238691960|sp|B2UW05|NUSB_HELPS RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|188143053|gb|ACD47470.1| transcription antitermination protein NusB [Helicobacter pylori Shi470] gi|216943700|gb|EEC23143.1| hypothetical protein HP9810_877g6 [Helicobacter pylori 98-10] gi|254000650|emb|CAX28559.1| N utilization substance protein B homolog (Protein nusB), transcriptional antitermination factor [Helicobacter pylori B38] gi|261837458|gb|ACX97224.1| N utilization substance protein B/transcriptional antitermination factor [Helicobacter pylori 51] gi|297379224|gb|ADI34111.1| transcription antitermination factor NusB [Helicobacter pylori v225d] gi|308061306|gb|ADO03194.1| transcription antitermination protein NusB [Helicobacter pylori Cuz20] gi|308062871|gb|ADO04758.1| transcription antitermination protein NusB [Helicobacter pylori Sat464] gi|315585992|gb|ADU40373.1| transcription antitermination factor NusB [Helicobacter pylori 35A] gi|317008681|gb|ADU79261.1| transcription antitermination protein NusB [Helicobacter pylori India7] gi|317178310|dbj|BAJ56098.1| transcription antitermination protein NusB [Helicobacter pylori F30] gi|317181291|dbj|BAJ59075.1| transcription antitermination protein NusB [Helicobacter pylori F57] gi|332672789|gb|AEE69606.1| transcription antitermination factor NusB [Helicobacter pylori 83] Length = 138 Score = 118 bits (296), Expect = 3e-25, Method: Composition-based stats. Identities = 39/146 (26%), Positives = 65/146 (44%), Gaps = 13/146 (8%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 R AR A V+ LY + +I S + + +L + + +G Sbjct: 4 RTQARGAVVELLYAFESGNEEIKKIASSMLEEKKIKNNQL-----------AFALSLFNG 52 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135 V+++ ID LI L + W F RL + +ILR G E+ +II+E + + Sbjct: 53 VLEKINEIDALIEPHL-KDWDFKRLGSMEKAILRLGAYEIGFTP-TQNPIIINECIELGK 110 Query: 136 DFFYGDEPKFINAVLDKVSRKEEIKR 161 + + PKF+NA+LD +S+K K Sbjct: 111 LYAEPNTPKFLNAILDSLSKKLAQKP 136 >gi|225025922|ref|ZP_03715114.1| hypothetical protein EUBHAL_00158 [Eubacterium hallii DSM 3353] gi|224956708|gb|EEG37917.1| hypothetical protein EUBHAL_00158 [Eubacterium hallii DSM 3353] Length = 133 Score = 118 bits (296), Expect = 3e-25, Method: Composition-based stats. Identities = 37/145 (25%), Positives = 65/145 (44%), Gaps = 12/145 (8%) Query: 10 LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF 69 +K+S R R L++++ T E + E + F +++ + D + Sbjct: 1 MKMS--RRKVRETIFLLLFRVEFN---TQEELQEQIKWYFEERPDIEGK------DQIYI 49 Query: 70 RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISE 129 I ++ R ID I S + E W RL +ILR V E+ ++P V I+E Sbjct: 50 ETKIGSILKRLPEIDEQIHS-ICEGWRLERLGKPELAILRLAVYEITNDANIPTGVAINE 108 Query: 130 YVCIAHDFFYGDEPKFINAVLDKVS 154 V +A + + P+F+N VL K++ Sbjct: 109 AVELAKIYCSEEAPRFVNGVLAKLA 133 >gi|124514784|gb|EAY56296.1| transcription antitermination factor (NusB) [Leptospirillum rubarum] Length = 168 Score = 118 bits (296), Expect = 3e-25, Method: Composition-based stats. Identities = 31/147 (21%), Positives = 62/147 (42%), Gaps = 18/147 (12%) Query: 17 GIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGV 76 AR+ +Q+L+ + + L FR + G Sbjct: 22 HKARIEVLQSLFAGE----------------YLPGGPPPFTLTSTLPSQARLFRDRLGGA 65 Query: 77 M-DRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135 + + ++ ID +IS + W+ R+ + +ILR G+ E++ VP V + E + +AH Sbjct: 66 IREHREEIDTVISRF-SVDWTLDRMSRVDRNILRMGICEILFEPEVPFRVTVDESLELAH 124 Query: 136 DFFYGDEPKFINAVLDKVSRKEEIKRS 162 F + +FIN +L +V + +++ Sbjct: 125 QFSEPEAVRFINGILHRVGTELNPEKA 151 >gi|57168521|ref|ZP_00367654.1| transcription antitermination factor NusB [Campylobacter coli RM2228] gi|305432938|ref|ZP_07402096.1| transcription antitermination factor NusB [Campylobacter coli JV20] gi|57020026|gb|EAL56703.1| transcription antitermination factor NusB [Campylobacter coli RM2228] gi|304444092|gb|EFM36747.1| transcription antitermination factor NusB [Campylobacter coli JV20] Length = 132 Score = 118 bits (296), Expect = 3e-25, Method: Composition-based stats. Identities = 31/143 (21%), Positives = 62/143 (43%), Gaps = 14/143 (9%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 R R + + LY +++ + I E+ + + + + + + G Sbjct: 4 RHQVRQSVISLLYALEMNEKN-ENFIDEFLNEKKIRNEQKN-----------FTLSLYEG 51 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135 ++ ID ++ L E +L I +ILR G EL+ P ++I+E + +A Sbjct: 52 IIKNLDDIDKNLNPYLNEN-EIEKLGHIERAILRLGAYELLFT-DTPNAIVINEAIELAK 109 Query: 136 DFFYGDEPKFINAVLDKVSRKEE 158 + + PKFIN VLD + + ++ Sbjct: 110 ELANDNSPKFINGVLDTLVKAKQ 132 >gi|15611072|ref|NP_222723.1| transcription antitermination protein NusB [Helicobacter pylori J99] gi|7387981|sp|Q9ZN57|NUSB_HELPJ RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|4154504|gb|AAD05585.1| TRANSCRIPTION TERMINATION [Helicobacter pylori J99] Length = 138 Score = 118 bits (296), Expect = 3e-25, Method: Composition-based stats. Identities = 39/146 (26%), Positives = 65/146 (44%), Gaps = 13/146 (8%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 R AR A V+ LY + +I S + + +L + + +G Sbjct: 4 RTQARGAVVELLYAFESGNEEIKKIASSMLEEKKIKNNQL-----------AFALSLFNG 52 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135 V+++ ID LI L + W F RL + +ILR G E+ +II+E + + Sbjct: 53 VLEKINEIDALIEPHL-KDWDFKRLGSMEKAILRLGAYEIGFTP-TQNPIIINECIELGK 110 Query: 136 DFFYGDEPKFINAVLDKVSRKEEIKR 161 + + PKF+NA+LD +S+K K Sbjct: 111 LYAEPNTPKFLNAILDSLSKKLAQKP 136 >gi|261838874|gb|ACX98639.1| transcription antitermination protein NusB [Helicobacter pylori 52] Length = 138 Score = 118 bits (296), Expect = 3e-25, Method: Composition-based stats. Identities = 39/146 (26%), Positives = 65/146 (44%), Gaps = 13/146 (8%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 R AR A V+ LY + +I S + + +L + + +G Sbjct: 4 RTQARGAVVELLYAFESGNEEIKKIASSILEEKKIKNNQL-----------AFALSLFNG 52 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135 V+++ ID LI L + W F RL + +ILR G E+ +II+E + + Sbjct: 53 VLEKINEIDALIEPHL-KDWDFKRLGSMEKAILRLGAYEIGFTP-TQNPIIINECIELGK 110 Query: 136 DFFYGDEPKFINAVLDKVSRKEEIKR 161 + + PKF+NA+LD +S+K K Sbjct: 111 LYAEPNTPKFLNAILDSLSKKLAQKP 136 >gi|150390264|ref|YP_001320313.1| NusB antitermination factor [Alkaliphilus metalliredigens QYMF] gi|149950126|gb|ABR48654.1| NusB antitermination factor [Alkaliphilus metalliredigens QYMF] Length = 129 Score = 117 bits (295), Expect = 4e-25, Method: Composition-based stats. Identities = 26/135 (19%), Positives = 58/135 (42%), Gaps = 12/135 (8%) Query: 24 VQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHI 83 ++ L+++++ E I Y +D E + E+ I ++ + I Sbjct: 1 MKVLFEMEMNNEMNVESIKLY----------MDREPQKIEQ-QEYVHTSITKTIENLEEI 49 Query: 84 DLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEP 143 D I ++ W +R+ + +ILR + E++ +P V ++E + + + + Sbjct: 50 DTYIKQY-SKGWKLNRIANVDLAILRLALTEMLHMGEIPYRVSVNEAIELGKKYSAEESA 108 Query: 144 KFINAVLDKVSRKEE 158 FIN +L + +EE Sbjct: 109 SFINGILGRFIEEEE 123 >gi|118602517|ref|YP_903732.1| NusB antitermination factor [Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)] gi|118567456|gb|ABL02261.1| NusB antitermination factor [Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)] Length = 140 Score = 117 bits (295), Expect = 4e-25, Method: Composition-based stats. Identities = 33/150 (22%), Positives = 64/150 (42%), Gaps = 16/150 (10%) Query: 11 KLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFR 70 K S +R R VQALYQ + G +I ++ + + +F Sbjct: 4 KTSKQRS--RERVVQALYQYLVSGGEILQIEQQFLNQKQG------------KISKAFFS 49 Query: 71 VIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEY 130 + ++ K +D +I+ + + +L + +IL G EL VP +++I+E Sbjct: 50 NLFINILKNKSLLDEIIAPTINRE--TEQLGAVEHAILYLGAFELKFSPGVPYKIVINES 107 Query: 131 VCIAHDFFYGDEPKFINAVLDKVSRKEEIK 160 + +A + K IN LDK+++ + + Sbjct: 108 LELAKLYGAEGAHKLINVSLDKLAQTLQPR 137 >gi|169350501|ref|ZP_02867439.1| hypothetical protein CLOSPI_01269 [Clostridium spiroforme DSM 1552] gi|169292821|gb|EDS74954.1| hypothetical protein CLOSPI_01269 [Clostridium spiroforme DSM 1552] Length = 134 Score = 117 bits (295), Expect = 4e-25, Method: Composition-based stats. Identities = 39/144 (27%), Positives = 70/144 (48%), Gaps = 11/144 (7%) Query: 10 LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF 69 +K +R+ + R AV A+YQ +I +T E+ + ++ D E D ++ Sbjct: 1 MKK-YRKKLIREKAVIAIYQKLLIDITTEEVYNYLDS---------DKELANDKDDYDYC 50 Query: 70 RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISE 129 ++I + + + ++ L + WS RL + +IL G EL+E EVII+E Sbjct: 51 VMLISSIANNLEKYKAEVAKHLKKGWSLERLSKMELAILLVGCYELLETDQS-KEVIINE 109 Query: 130 YVCIAHDFFYGDEPKFINAVLDKV 153 V ++ + D KF+N VL+K+ Sbjct: 110 AVELSKKYCDDDVYKFVNGVLNKI 133 >gi|15807061|ref|NP_295790.1| N-utilization substance protein B [Deinococcus radiodurans R1] gi|22095974|sp|Q9RSQ7|NUSB_DEIRA RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|6459861|gb|AAF11617.1|AE002043_2 N-utilization substance protein B [Deinococcus radiodurans R1] Length = 192 Score = 117 bits (295), Expect = 4e-25, Method: Composition-based stats. Identities = 37/168 (22%), Positives = 65/168 (38%), Gaps = 8/168 (4%) Query: 1 MTIQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESV 60 MT + +K ++ R AR + L++ D + T E D Sbjct: 1 MT-RRREKAVQPVGTRRAAREFVFRVLFEADRGDVPLQAVF----TRAEGVMREGDDTFP 55 Query: 61 YLHVDLEWF-RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECH 119 L D F ++ G+ ++ ID ++ + W+F ++ ++LR EL+ Sbjct: 56 QLGPDALHFAEELVTGLERHREAIDDVLHRTI-RGWTFDQMAQTDLNVLRLATYELMYTP 114 Query: 120 SVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRSGCVSA 167 P +I V IA F D +F+N VL +SR + +A Sbjct: 115 E-PHPPVIESAVRIARKFGGDDSGRFVNGVLAGLSRNLREEVGESPAA 161 >gi|329770465|ref|ZP_08261844.1| transcription antitermination factor NusB [Gemella sanguinis M325] gi|328836320|gb|EGF85986.1| transcription antitermination factor NusB [Gemella sanguinis M325] Length = 131 Score = 117 bits (295), Expect = 4e-25, Method: Composition-based stats. Identities = 35/140 (25%), Positives = 60/140 (42%), Gaps = 18/140 (12%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 R R + + L+Q++ YR + E+D S E+ + Sbjct: 4 RHELRESVFKILFQVENTDLD----------YRELLEFEVDDVSG-----SEYVTRTLDD 48 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135 + +K+ ID +IS+ L + W RL + ILR E++ +P +V I+E V ++ Sbjct: 49 IFAKKEQIDEIISNNL-KGWKLERLSKMDRQILRISTYEILFT-DIPYKVSINEAVELSK 106 Query: 136 DFFY-GDEPKFINAVLDKVS 154 + D KFIN VL + Sbjct: 107 KYSEKDDSYKFINGVLKGIV 126 >gi|58584450|ref|YP_198023.1| transcription termination factor, NusB [Wolbachia endosymbiont strain TRS of Brugia malayi] gi|58418766|gb|AAW70781.1| Transcription termination factor, NusB [Wolbachia endosymbiont strain TRS of Brugia malayi] Length = 160 Score = 117 bits (294), Expect = 5e-25, Method: Composition-based stats. Identities = 44/161 (27%), Positives = 69/161 (42%), Gaps = 3/161 (1%) Query: 3 IQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYL 62 +++ + K +R AR AVQ Y +G + E R D+ Sbjct: 1 MEEEPVEKKWRIKRSAARFLAVQVAYSNIFMGYDKSTFELENCGLRNYVGKLADIFECE- 59 Query: 63 HVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVP 122 D ++ +++ V+ D +I L WS RL+++ SILR V EL C P Sbjct: 60 EFDYQFLEKLLYKVIRSGGEYDKIIEYYLHPSWSLLRLNLVSLSILRVAVCELANC-DTP 118 Query: 123 VEVIISEYVCIAHDFFY-GDEPKFINAVLDKVSRKEEIKRS 162 V+I+EY IA D E FIN +LDK ++ ++ Sbjct: 119 APVVINEYTNIASDLLDKPSEIGFINGLLDKAKSAVKLNKN 159 >gi|225018827|ref|ZP_03708019.1| hypothetical protein CLOSTMETH_02777 [Clostridium methylpentosum DSM 5476] gi|224948387|gb|EEG29596.1| hypothetical protein CLOSTMETH_02777 [Clostridium methylpentosum DSM 5476] Length = 132 Score = 117 bits (294), Expect = 5e-25, Method: Composition-based stats. Identities = 35/144 (24%), Positives = 65/144 (45%), Gaps = 14/144 (9%) Query: 15 RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74 +R R A +++ +E+I+ E C + E++ + + + Sbjct: 2 KRHQMRENAFILVFEKIFNDDDVSEVIAAAEE---CGEFEVNSDVI----------ALFT 48 Query: 75 GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134 GV +D LIS LT+ W+ +RL ++ +ILR V E++ V + I+E V +A Sbjct: 49 GVQQHISELDRLISEHLTK-WNITRLSKVILAILRLAVYEIVYVERVEAPIAINEAVELA 107 Query: 135 HDFFYGDEPKFINAVLDKVSRKEE 158 ++ ++ F+N VL R E Sbjct: 108 KEYATQEDAAFVNGVLGSFVRAAE 131 >gi|260903826|ref|ZP_05912148.1| NusB antitermination factor [Brevibacterium linens BL2] Length = 121 Score = 117 bits (294), Expect = 5e-25, Method: Composition-based stats. Identities = 31/113 (27%), Positives = 53/113 (46%), Gaps = 4/113 (3%) Query: 44 YETYRFCADTELDVESVYLHVD---LEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRL 100 +E + DTE V D + I+ G+ ++ ID +I++ E W+ R+ Sbjct: 2 FEAGQRRLDTEQIVTMRSNDPDYPMKAYAVEIVEGITSHREEIDEIIATY-AEGWTLERM 60 Query: 101 DMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKV 153 + ++L+ G E+I VP + I E V +A F D P FI+ +L +V Sbjct: 61 PAVDLALLQIGTWEIIFNDEVPDKAAIDEAVSLARQFSTDDSPGFISGLLSRV 113 >gi|302387570|ref|YP_003823392.1| NusB antitermination factor [Clostridium saccharolyticum WM1] gi|302198198|gb|ADL05769.1| NusB antitermination factor [Clostridium saccharolyticum WM1] Length = 147 Score = 117 bits (294), Expect = 5e-25, Method: Composition-based stats. Identities = 39/146 (26%), Positives = 62/146 (42%), Gaps = 8/146 (5%) Query: 16 RGIARLAAVQALYQIDI--IGCSTTEIISEYETYRFCADTELDVESVYLHVDL-----EW 68 R R + L+ D T ++I +E + VE + VD+ + Sbjct: 3 RSKMREHCFKMLFCADFYPAEEKTGQLIQYFEEPKEDDLNADGVEEIIHDVDMSEENAAY 62 Query: 69 FRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIIS 128 R VM R +DL I+ + E W R+ +ILR + E++ VP +V I+ Sbjct: 63 LRERAESVMARIPELDLKINE-VAEGWKTKRMGKAELTILRLALYEILFDEDVPEKVAIN 121 Query: 129 EYVCIAHDFFYGDEPKFINAVLDKVS 154 E V +A + + P FIN VL K+ Sbjct: 122 EAVELAKKYGGNEAPAFINGVLAKLV 147 >gi|229828872|ref|ZP_04454941.1| hypothetical protein GCWU000342_00957 [Shuttleworthia satelles DSM 14600] gi|229792035|gb|EEP28149.1| hypothetical protein GCWU000342_00957 [Shuttleworthia satelles DSM 14600] Length = 152 Score = 117 bits (294), Expect = 6e-25, Method: Composition-based stats. Identities = 35/155 (22%), Positives = 63/155 (40%), Gaps = 16/155 (10%) Query: 11 KLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFR 70 K + R R A + L+ ++ + + + F TEL+++ + D + Sbjct: 3 KKTMIRRQIRETAFRILF---VLNFCPADQMQDQLNLYFTDHTELEIDDLTEEEDQKAVI 59 Query: 71 VI-----------IHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECH 119 + G ID +I +E W SRL + ++LR V E+ Sbjct: 60 RLDQASWPEITAKCLGAAGHLPEIDRIIEES-SEGWKLSRLTKVDLTLLRLAVYEMKF-E 117 Query: 120 SVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVS 154 ++P + I+E V +A + P F+N VL K+S Sbjct: 118 NLPSGIAINEAVELAKRYGTDKSPAFVNGVLAKIS 152 >gi|94984805|ref|YP_604169.1| NusB antitermination factor [Deinococcus geothermalis DSM 11300] gi|119390766|sp|Q1J0I4|NUSB_DEIGD RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|94555086|gb|ABF45000.1| NusB antitermination factor [Deinococcus geothermalis DSM 11300] Length = 169 Score = 117 bits (294), Expect = 6e-25, Method: Composition-based stats. Identities = 33/155 (21%), Positives = 63/155 (40%), Gaps = 6/155 (3%) Query: 1 MTIQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESV 60 MT + ++ + R AR A + L++ + + + E D D + Sbjct: 1 MT-RRRERGQQPVGTRRAAREFAFRVLFEAERGKLPLETVFTRAEGDMREGD---DTFAQ 56 Query: 61 YLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHS 120 L + R ++ G+ +R+ +D + + W F ++ ++LR E++ Sbjct: 57 LNAEALAFARQLVDGLGERRADVDAALRRTI-RGWDFEQMAQTDLNVLRLATYEMLYTPE 115 Query: 121 VPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSR 155 P +I V IA F D +F+N VL +SR Sbjct: 116 -PHPPVIESAVRIARKFGGEDSGRFVNGVLGGLSR 149 >gi|307636683|gb|ADN79133.1| Transcription termination protein [Helicobacter pylori 908] gi|325995267|gb|ADZ50672.1| Transcription termination protein [Helicobacter pylori 2018] gi|325996871|gb|ADZ49079.1| Transcription termination protein [Helicobacter pylori 2017] Length = 138 Score = 117 bits (294), Expect = 6e-25, Method: Composition-based stats. Identities = 40/146 (27%), Positives = 65/146 (44%), Gaps = 13/146 (8%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 R AR A V+ LY + +I S + + +L + + +G Sbjct: 4 RTQARGAVVELLYAFESGNEEIKKIASSMLEEKKIKNNQL-----------VFALSLFNG 52 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135 V++R ID LI L + W F RL + +ILR G E+ +II+E + + Sbjct: 53 VLERINEIDALIEPHL-KDWDFKRLGSMEKAILRLGAYEIGFTP-TQNPIIINECIELGK 110 Query: 136 DFFYGDEPKFINAVLDKVSRKEEIKR 161 + + PKF+NA+LD +S+K K Sbjct: 111 LYAEPNTPKFLNAILDSLSKKLAQKP 136 >gi|56416682|ref|YP_153756.1| N utilization substance protein B [Anaplasma marginale str. St. Maries] gi|222475047|ref|YP_002563462.1| N utilization substance protein B (nusB) [Anaplasma marginale str. Florida] gi|56387914|gb|AAV86501.1| N utilization substance protein B [Anaplasma marginale str. St. Maries] gi|222419183|gb|ACM49206.1| N utilization substance protein B (nusB) [Anaplasma marginale str. Florida] Length = 177 Score = 117 bits (294), Expect = 6e-25, Method: Composition-based stats. Identities = 45/168 (26%), Positives = 71/168 (42%), Gaps = 7/168 (4%) Query: 1 MTIQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESV 60 M DL + AR AVQ Y + E + + E+ Sbjct: 5 MEADSKSDDLPWYSGKTSARFLAVQGAYSMMFS-SYAAEDLDGLLEHL----CEMRGVFG 59 Query: 61 YLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHS 120 VD + I+ ++ R ID IS + + WS R++++ SI+RAG+ EL+ C S Sbjct: 60 LGRVDKKLLTKILRSMLARCSEIDATISEHINKNWSMDRINLVSLSIMRAGICELL-CFS 118 Query: 121 VPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRSGCVSAI 168 ++I+EYV IA E F+NA+L+K ++ R V Sbjct: 119 TNESIVINEYVDIASYALEDAEVNFVNAILNK-AKTVRFGRGTEVQNP 165 >gi|325661675|ref|ZP_08150298.1| transcription antitermination factor NusB [Lachnospiraceae bacterium 4_1_37FAA] gi|325471928|gb|EGC75143.1| transcription antitermination factor NusB [Lachnospiraceae bacterium 4_1_37FAA] Length = 134 Score = 117 bits (293), Expect = 6e-25, Method: Composition-based stats. Identities = 36/139 (25%), Positives = 61/139 (43%), Gaps = 10/139 (7%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 R R + L++I+ E+ + Y ++ D E E+ R Sbjct: 3 RSELREHIFRILFRIEF--QPKEEMEEQLALYLEELESAKDTEK-------EYIRTKYAA 53 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135 + ++ + ID I++ +T W SR+ + +ILR V E+ VP V I+E V +A Sbjct: 54 IAEKVEMIDEKINASVT-GWKTSRMGKVDLTILRLAVYEIEWDEEVPQGVAINEAVELAK 112 Query: 136 DFFYGDEPKFINAVLDKVS 154 + + P FIN VL K+ Sbjct: 113 RYGGEESPSFINGVLGKIV 131 >gi|331084732|ref|ZP_08333820.1| transcription antitermination factor NusB [Lachnospiraceae bacterium 9_1_43BFAA] gi|330410826|gb|EGG90248.1| transcription antitermination factor NusB [Lachnospiraceae bacterium 9_1_43BFAA] Length = 134 Score = 117 bits (293), Expect = 7e-25, Method: Composition-based stats. Identities = 36/139 (25%), Positives = 61/139 (43%), Gaps = 10/139 (7%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 R R + L++I+ E+ + Y ++ D E E+ R Sbjct: 3 RSELREHIFRILFRIEF--QPKEEMEEQLALYLEELESAKDTEK-------EYIRTKYAA 53 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135 + ++ + ID I++ +T W SR+ + +ILR V E+ VP V I+E V +A Sbjct: 54 IAEKVEMIDEKINASVT-GWKTSRMGKVDLTILRLAVYEIEWDEEVPQGVAINEAVELAK 112 Query: 136 DFFYGDEPKFINAVLDKVS 154 + + P FIN VL K+ Sbjct: 113 RYGGEESPSFINGVLGKIV 131 >gi|269958899|ref|YP_003328688.1| N utilization substance protein B [Anaplasma centrale str. Israel] gi|269848730|gb|ACZ49374.1| N utilization substance protein B [Anaplasma centrale str. Israel] Length = 173 Score = 117 bits (293), Expect = 7e-25, Method: Composition-based stats. Identities = 45/166 (27%), Positives = 78/166 (46%), Gaps = 7/166 (4%) Query: 1 MTIQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESV 60 M + +L + AR AVQ Y + ST + + E + E+ Sbjct: 1 MGVGSESDNLPWYSGKTSARFLAVQGAYSMMFSSYSTED-LDELLEHL----CEMRDVLG 55 Query: 61 YLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHS 120 VD I+ ++ + ID +IS +++KW+ R+++I S++RAG+ EL+ C + Sbjct: 56 LGRVDKRLLTKILGSMLSKYSEIDAIISEHISKKWTMDRINLISLSVMRAGICELL-CFN 114 Query: 121 VPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRSGCVS 166 V+I+EYV IA E F+NA+L+K ++ + R V Sbjct: 115 TNESVVINEYVDIASYALEDAEVDFVNAILNK-AKVVRLGRGAEVQ 159 >gi|254994892|ref|ZP_05277082.1| N utilization substance protein B (nusB) [Anaplasma marginale str. Mississippi] gi|255003026|ref|ZP_05277990.1| N utilization substance protein B (nusB) [Anaplasma marginale str. Puerto Rico] gi|255004149|ref|ZP_05278950.1| N utilization substance protein B (nusB) [Anaplasma marginale str. Virginia] Length = 173 Score = 117 bits (293), Expect = 7e-25, Method: Composition-based stats. Identities = 45/168 (26%), Positives = 71/168 (42%), Gaps = 7/168 (4%) Query: 1 MTIQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESV 60 M DL + AR AVQ Y + E + + E+ Sbjct: 1 MEADSKSDDLPWYSGKTSARFLAVQGAYSMMFS-SYAAEDLDGLLEHL----CEMRGVFG 55 Query: 61 YLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHS 120 VD + I+ ++ R ID IS + + WS R++++ SI+RAG+ EL+ C S Sbjct: 56 LGRVDKKLLTKILRSMLARCSEIDATISEHINKNWSMDRINLVSLSIMRAGICELL-CFS 114 Query: 121 VPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRSGCVSAI 168 ++I+EYV IA E F+NA+L+K ++ R V Sbjct: 115 TNESIVINEYVDIASYALEDAEVNFVNAILNK-AKTVRFGRGTEVQNP 161 >gi|227503547|ref|ZP_03933596.1| transcription antitermination protein NusB [Corynebacterium accolens ATCC 49725] gi|227075583|gb|EEI13546.1| transcription antitermination protein NusB [Corynebacterium accolens ATCC 49725] Length = 211 Score = 117 bits (293), Expect = 7e-25, Method: Composition-based stats. Identities = 34/130 (26%), Positives = 57/130 (43%), Gaps = 7/130 (5%) Query: 26 ALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDL 85 LY+ + I+ + D +V D + +VI+ GV + ID Sbjct: 28 ILYEAENRDVDPVAIVEDRVALAR-----EDRHAVAPIAD--YTKVIVQGVAEELDAIDD 80 Query: 86 LISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKF 145 IS L++ W R+ + +ILR V EL+ VP + E V +A + + + Sbjct: 81 TISRYLSQNWELHRIPAVDRAILRLSVWELLFNPDVPTATAVVEGVELASQYSHDQAAPY 140 Query: 146 INAVLDKVSR 155 I+AVLD V++ Sbjct: 141 IHAVLDDVAQ 150 >gi|269467885|gb|EEZ79624.1| transcription termination factor [uncultured SUP05 cluster bacterium] Length = 142 Score = 116 bits (292), Expect = 8e-25, Method: Composition-based stats. Identities = 30/147 (20%), Positives = 63/147 (42%), Gaps = 14/147 (9%) Query: 10 LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF 69 + + +R VQA+YQ + G +I ++ + + +F Sbjct: 1 MAFKTPKQRSRERVVQAVYQYLVSGGEVLQIEQQFLNQKEG------------KISKAFF 48 Query: 70 RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISE 129 + ++ + +D LI+ ++ + L + ++L GV EL VP +V+I+E Sbjct: 49 SNLFINILKNRIELDELIAPTISRE--TDELGSVEHAVLYLGVYELQNSIEVPYKVVINE 106 Query: 130 YVCIAHDFFYGDEPKFINAVLDKVSRK 156 + IA + K IN+ LD++++ Sbjct: 107 ALEIAKLYGAEGAFKLINSSLDQLAKD 133 >gi|266620364|ref|ZP_06113299.1| transcription antitermination factor NusB [Clostridium hathewayi DSM 13479] gi|288868036|gb|EFD00335.1| transcription antitermination factor NusB [Clostridium hathewayi DSM 13479] Length = 147 Score = 116 bits (292), Expect = 8e-25, Method: Composition-based stats. Identities = 36/146 (24%), Positives = 59/146 (40%), Gaps = 8/146 (5%) Query: 16 RGIARLAAVQALYQIDIIGCSTTE--IISEYETYRFCADTELDVESVYLHVDLE-----W 68 R R + L+ D E I ++ + T VE + V++ + Sbjct: 3 RSKLREHCFKMLFCADFYPAEEKEEQIERYFDEPKEDETTPEGVEEILHDVEMSPEEESY 62 Query: 69 FRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIIS 128 + VM + +D I + E W R+ +ILR + E++ VP +V I+ Sbjct: 63 LKTKTEAVMRKIPELDEKID-AVAEGWKTKRMGKAELTILRLALYEILYDEEVPEKVAIN 121 Query: 129 EYVCIAHDFFYGDEPKFINAVLDKVS 154 E V +A F + P FIN VL K+ Sbjct: 122 EAVELAKRFGGNEAPAFINGVLAKLV 147 >gi|52840964|ref|YP_094763.1| transcription termination factor NusB [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] gi|52628075|gb|AAU26816.1| transcription termination factor NusB [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] Length = 123 Score = 116 bits (292), Expect = 8e-25, Method: Composition-based stats. Identities = 27/125 (21%), Positives = 59/125 (47%), Gaps = 13/125 (10%) Query: 32 IIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCL 91 + G EI +++ T VD E+F +++G+ + ++ + L Sbjct: 1 MSGTDLHEIEAQFRTIN-----------NMDKVDGEYFCRLLYGIPTHVEALEASLLPYL 49 Query: 92 TEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLD 151 + + L+ I ++LR G EL C +P +VI+ E V + +F + +++N VL+ Sbjct: 50 DRE--INALNPIELTVLRIGSFELFHCPEIPYKVILDESVSLTKEFGSQEGYRYVNGVLN 107 Query: 152 KVSRK 156 ++++ Sbjct: 108 NLAKQ 112 >gi|306836202|ref|ZP_07469186.1| N utilization substance protein B [Corynebacterium accolens ATCC 49726] gi|304567923|gb|EFM43504.1| N utilization substance protein B [Corynebacterium accolens ATCC 49726] Length = 212 Score = 116 bits (292), Expect = 9e-25, Method: Composition-based stats. Identities = 34/130 (26%), Positives = 57/130 (43%), Gaps = 7/130 (5%) Query: 26 ALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDL 85 LY+ + I+ + D +V D + +VI+ GV + ID Sbjct: 28 ILYEAENRDVDPVAIVEDRVALAR-----EDRHAVAPIAD--YTKVIVQGVAEELDAIDD 80 Query: 86 LISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKF 145 IS L++ W R+ + +ILR V EL+ VP + E V +A + + + Sbjct: 81 TISRYLSQNWELHRIPAVDRAILRLSVWELLFNPDVPTATAVVEGVELASQYSHDQAAPY 140 Query: 146 INAVLDKVSR 155 I+AVLD V++ Sbjct: 141 IHAVLDDVAQ 150 >gi|332653013|ref|ZP_08418758.1| transcription antitermination factor NusB [Ruminococcaceae bacterium D16] gi|332518159|gb|EGJ47762.1| transcription antitermination factor NusB [Ruminococcaceae bacterium D16] Length = 164 Score = 116 bits (292), Expect = 1e-24, Method: Composition-based stats. Identities = 29/155 (18%), Positives = 55/155 (35%), Gaps = 4/155 (2%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVE---SVYLHVDLEWFRVI 72 R AR AV ++ + S E++ T + + + + R + Sbjct: 3 RSTAREIAVHLIFSLGFGTQSAEEVLDSELTRERFEELGGESQLYAQFPNEKQERYIRDL 62 Query: 73 IHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVC 132 + GV +D I+ WSF+R+ + +ILR + E++ +P I V Sbjct: 63 VRGVFAHGPELDDYIARYAV-GWSFARIPRMAAAILRTAMYEVLYMPDIPNAAAIDAAVE 121 Query: 133 IAHDFFYGDEPKFINAVLDKVSRKEEIKRSGCVSA 167 + + + F+N +L R E Sbjct: 122 MTKKYEPQEVAAFVNGILGTFVRTEFPDTPAKPEK 156 >gi|189501850|ref|YP_001957567.1| hypothetical protein Aasi_0422 [Candidatus Amoebophilus asiaticus 5a2] gi|189497291|gb|ACE05838.1| hypothetical protein Aasi_0422 [Candidatus Amoebophilus asiaticus 5a2] Length = 378 Score = 116 bits (291), Expect = 1e-24, Method: Composition-based stats. Identities = 27/103 (26%), Positives = 53/103 (51%), Gaps = 1/103 (0%) Query: 53 TELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGV 112 E++ ++ +I +++++ ID LI + + WS R ++ I++ G+ Sbjct: 275 KEIEDAMQIGTNAASFYDKLIATALEQEKFIDNLIQQHI-KNWSIERTVLLDRIIIKMGL 333 Query: 113 LELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSR 155 E+ S+P +V I+EYV +A + KFIN VLD +++ Sbjct: 334 CEMKYFDSIPTKVAINEYVDLAKKYSTAKSSKFINGVLDTIAK 376 >gi|91205934|ref|YP_538289.1| transcription antitermination protein NusB [Rickettsia bellii RML369-C] gi|157826705|ref|YP_001495769.1| transcription antitermination protein NusB [Rickettsia bellii OSU 85-389] gi|119390813|sp|Q1RHG4|NUSB_RICBR RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|166215711|sp|A8GV61|NUSB_RICB8 RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|91069478|gb|ABE05200.1| N utilization substance protein B [Rickettsia bellii RML369-C] gi|157802009|gb|ABV78732.1| transcription antitermination protein NusB [Rickettsia bellii OSU 85-389] Length = 156 Score = 116 bits (291), Expect = 1e-24, Method: Composition-based stats. Identities = 34/131 (25%), Positives = 70/131 (53%) Query: 28 YQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLI 87 YQ + + I E + DT + + + + + F++++ V + ID +I Sbjct: 21 YQHMLRNNDNIDDIIENVLSFYRNDTSMTDSPIKISLTISHFKMLVKLVFENIDKIDEII 80 Query: 88 SSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFIN 147 S+ L + + + ++L ++LR+G+ EL+ +P +VII+EY IA+D E F+N Sbjct: 81 SNHLVNDKNQNHIPILLQALLRSGICELLFFPDIPTKVIINEYTDIANDMLNDHEIGFVN 140 Query: 148 AVLDKVSRKEE 158 ++LDK++ + + Sbjct: 141 SILDKIAHENK 151 >gi|169333804|ref|ZP_02860997.1| hypothetical protein ANASTE_00190 [Anaerofustis stercorihominis DSM 17244] gi|169259369|gb|EDS73335.1| hypothetical protein ANASTE_00190 [Anaerofustis stercorihominis DSM 17244] Length = 132 Score = 116 bits (291), Expect = 1e-24, Method: Composition-based stats. Identities = 34/142 (23%), Positives = 65/142 (45%), Gaps = 13/142 (9%) Query: 15 RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74 +R +AR + ++QI + ++ ++S E+ + + Sbjct: 2 KRDVARDLVYKIIFQI------------NFHDDFAERYEQMILDSGIKGTQGEYAKKTVK 49 Query: 75 GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134 G++D + ID I L + W F RL + ++LR GV E++ +P V ++E V +A Sbjct: 50 GILDNLEEIDDTIKDNL-KGWKFERLSTHVIAVLRLGVFEIMYNEDIPPLVGLNEAVSLA 108 Query: 135 HDFFYGDEPKFINAVLDKVSRK 156 H + E F+N +L+ V +K Sbjct: 109 HTYSDEKEATFVNGLLNSVYKK 130 >gi|109946871|ref|YP_664099.1| transcription antitermination protein NusB [Helicobacter acinonychis str. Sheeba] gi|122973428|sp|Q17Z26|NUSB_HELAH RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|109714092|emb|CAJ99100.1| transcription termination protein [Helicobacter acinonychis str. Sheeba] Length = 138 Score = 116 bits (291), Expect = 1e-24, Method: Composition-based stats. Identities = 37/146 (25%), Positives = 64/146 (43%), Gaps = 13/146 (8%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 R AR A ++ LY + +I + + +L + + +G Sbjct: 4 RTQARGAVIELLYAFESGNEEIKKIAPSMLEEKKIKNNQL-----------AFALSLFNG 52 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135 V+++ ID LI L + W F RL + +ILR G E+ +II+E + + Sbjct: 53 VLEKINEIDALIEPHL-KDWDFKRLGSMEKAILRLGAYEIGFTP-TQNPIIINECIELGK 110 Query: 136 DFFYGDEPKFINAVLDKVSRKEEIKR 161 + + PKF+NA+LD +S+K K Sbjct: 111 LYAEPNTPKFLNAILDSLSKKLAQKP 136 >gi|282850207|ref|ZP_06259586.1| transcription antitermination factor NusB [Veillonella parvula ATCC 17745] gi|282579700|gb|EFB85104.1| transcription antitermination factor NusB [Veillonella parvula ATCC 17745] Length = 134 Score = 115 bits (290), Expect = 1e-24, Method: Composition-based stats. Identities = 33/149 (22%), Positives = 59/149 (39%), Gaps = 16/149 (10%) Query: 10 LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF 69 + R AR A Q LY + + D + +++ +D + Sbjct: 1 MVTKRNRREARQYAFQMLYANEF--------------HTNQNDVQFPEGNIHKAMDKAYA 46 Query: 70 RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIEC-HSVPVEVIIS 128 II GV+ + ID + + + LD + SILR V E+ + + I+ Sbjct: 47 NSIIEGVLSNVEAIDATLQPF-CKSRKVANLDKVDRSILRIAVWEMTNKVEPLEPSIAIN 105 Query: 129 EYVCIAHDFFYGDEPKFINAVLDKVSRKE 157 E + +A +F K INA+LD ++ + Sbjct: 106 EAIQLAKEFGSDASYKLINAILDAYNKSK 134 >gi|226356156|ref|YP_002785896.1| N utilization substance protein B (Protein nusB)(NusB antitermination factor) [Deinococcus deserti VCD115] gi|259514814|sp|C1CVC5|NUSB_DEIDV RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|226318146|gb|ACO46142.1| putative N utilization substance protein B (Protein nusB)(NusB antitermination factor) [Deinococcus deserti VCD115] Length = 168 Score = 115 bits (290), Expect = 1e-24, Method: Composition-based stats. Identities = 39/159 (24%), Positives = 63/159 (39%), Gaps = 8/159 (5%) Query: 1 MTIQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESV 60 MT + +K ++ R AR + L++ D + T A E D Sbjct: 1 MT-RRREKAVQPVGTRRAAREFVFRVLFEADRGDLPLDTVF----TRAEGAMREGDDTFP 55 Query: 61 YLHVD-LEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECH 119 L D L + ++ G+ + ID + + WSF ++ ++LR ELI Sbjct: 56 QLSADALTFANELVRGLEKHRADIDTTLRRTI-RGWSFDQMAQTDLNVLRLATFELIYTA 114 Query: 120 SVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEE 158 P +I V IA F D +F+N VL +SR + Sbjct: 115 E-PHPPVIESAVRIARKFGGDDSGRFVNGVLAGLSRSLQ 152 >gi|291279490|ref|YP_003496325.1| N utilization substance protein B [Deferribacter desulfuricans SSM1] gi|290754192|dbj|BAI80569.1| N utilization substance protein B [Deferribacter desulfuricans SSM1] Length = 139 Score = 115 bits (290), Expect = 1e-24, Method: Composition-based stats. Identities = 38/147 (25%), Positives = 66/147 (44%), Gaps = 11/147 (7%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 + IAR A + LYQ ++ +I ++ + ++ + + Sbjct: 4 KSIAREKAFKMLYQAEMTNFKPDRLIKQFWELDEEKNEKVKL----------LANKLFRL 53 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135 V+D+K + D +IS L E W+F RL + + LR G+ EL PV I+ EY +A Sbjct: 54 VIDKKGYADDIISKYLKEGWTFERLTETVKNTLRLGIAEL-FNTETPVYAILDEYTTLAK 112 Query: 136 DFFYGDEPKFINAVLDKVSRKEEIKRS 162 + F+N VL+K+ + I+R Sbjct: 113 KYEDEKAASFVNGVLEKIRKDFNIERG 139 >gi|313114141|ref|ZP_07799693.1| transcription antitermination factor NusB [Faecalibacterium cf. prausnitzii KLE1255] gi|310623550|gb|EFQ06953.1| transcription antitermination factor NusB [Faecalibacterium cf. prausnitzii KLE1255] Length = 144 Score = 115 bits (290), Expect = 2e-24, Method: Composition-based stats. Identities = 31/141 (21%), Positives = 56/141 (39%), Gaps = 13/141 (9%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 R AR A + E I+ +E D E V+ + + +++ Sbjct: 7 RREARENAFLLAFSQTFGDIPLAEAITSHEE----NDEEHPVDG--------FSKHLLNA 54 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135 D +D I + L W+ RL + +ILR V E++ V I+E V + Sbjct: 55 YYDHSAEVDDEIRAHL-RNWTMERLPRVSLTILRLAVAEMLFGGENKPGVAINEAVELTK 113 Query: 136 DFFYGDEPKFINAVLDKVSRK 156 + ++ +F+N +L V+R Sbjct: 114 KYGADEDYQFVNGLLGAVARD 134 >gi|152993501|ref|YP_001359222.1| transcription antitermination protein NusB [Sulfurovum sp. NBC37-1] gi|166215724|sp|A6QBK6|NUSB_SULNB RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|151425362|dbj|BAF72865.1| transcription antitermination factor NusB [Sulfurovum sp. NBC37-1] Length = 130 Score = 115 bits (290), Expect = 2e-24, Method: Composition-based stats. Identities = 33/140 (23%), Positives = 56/140 (40%), Gaps = 13/140 (9%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 R AR A V LY D+ + + E + + D + + G Sbjct: 4 RHQARTAVVGLLYAYDLGNENIAKFSDEILEEDKIRNKQRD-----------FSHDLFDG 52 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135 ++ + +D I LT W + + + +ILR G E++ +II+E V +A Sbjct: 53 TIENLEMLDAEIEKHLT-DWDYDAIGRVEKAILRLGAYEIL-VAKTDRAIIINEAVELAK 110 Query: 136 DFFYGDEPKFINAVLDKVSR 155 P+FIN VLD + + Sbjct: 111 SLADEKSPQFINGVLDAIGK 130 >gi|317010284|gb|ADU84031.1| transcription antitermination protein NusB [Helicobacter pylori SouthAfrica7] Length = 138 Score = 115 bits (290), Expect = 2e-24, Method: Composition-based stats. Identities = 37/146 (25%), Positives = 64/146 (43%), Gaps = 13/146 (8%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 R AR A ++ LY + +I + + +L + + +G Sbjct: 4 RTQARGAVIELLYAFESGNEEIKKIAPSMLEEKKIKNNQL-----------AFALSLFNG 52 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135 V+++ ID LI L + W F RL + +ILR G E+ +II+E + + Sbjct: 53 VLEKINEIDALIEPHL-KDWDFKRLGSMEKAILRLGAYEIGFTP-TQNPIIINECIELGK 110 Query: 136 DFFYGDEPKFINAVLDKVSRKEEIKR 161 + + PKF+NA+LD +S+K K Sbjct: 111 LYAEPNTPKFLNAILDSLSKKLAQKP 136 >gi|160880647|ref|YP_001559615.1| NusB antitermination factor [Clostridium phytofermentans ISDg] gi|189035885|sp|A9KMC2|NUSB_CLOPH RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|160429313|gb|ABX42876.1| NusB antitermination factor [Clostridium phytofermentans ISDg] Length = 132 Score = 115 bits (290), Expect = 2e-24, Method: Composition-based stats. Identities = 28/138 (20%), Positives = 56/138 (40%), Gaps = 10/138 (7%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 R R + L++ + TE+ + Y D E+ V Sbjct: 3 RREIREHLFRMLFRKEF--HEPTELEEQVLFY-------FDSLESITPEQQEYLNVRFDK 53 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135 + ++ ID ++++ + W +R+ + +I+R E+ VPV+V I+E + +A Sbjct: 54 INEKLGEIDTILANA-SSGWKLNRMGKVDLNIMRLATFEIRFDDEVPVKVAINEAIELAK 112 Query: 136 DFFYGDEPKFINAVLDKV 153 + F+N +L KV Sbjct: 113 KYGGDSSASFVNGILAKV 130 >gi|325971258|ref|YP_004247449.1| NusB antitermination factor [Spirochaeta sp. Buddy] gi|324026496|gb|ADY13255.1| NusB antitermination factor [Spirochaeta sp. Buddy] Length = 152 Score = 115 bits (289), Expect = 2e-24, Method: Composition-based stats. Identities = 35/141 (24%), Positives = 63/141 (44%), Gaps = 7/141 (4%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 R AR A+Q LY +D +++ + + E D + + + ++ G Sbjct: 4 RHKARELALQTLYAMDFNKE--LDVLHIPAIFSGNTEEEHDQLEEEVKIYGMY---LVRG 58 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135 ++ ID LIS + R+D++ +ILR V L ++ +II E V ++ Sbjct: 59 TLENLFEIDELISKY-SLNRPIERIDIVDRNILRMSVFCLRFG-NIHPHIIIDEAVKLSQ 116 Query: 136 DFFYGDEPKFINAVLDKVSRK 156 DF KFIN +LD + ++ Sbjct: 117 DFSTEVNYKFINGILDTMQKQ 137 >gi|238019309|ref|ZP_04599735.1| hypothetical protein VEIDISOL_01173 [Veillonella dispar ATCC 17748] gi|237864008|gb|EEP65298.1| hypothetical protein VEIDISOL_01173 [Veillonella dispar ATCC 17748] Length = 134 Score = 115 bits (289), Expect = 2e-24, Method: Composition-based stats. Identities = 33/150 (22%), Positives = 59/150 (39%), Gaps = 18/150 (12%) Query: 10 LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF 69 + + R AR A Q LY + + D + ++ +D + Sbjct: 1 MVIKRNRREARQYAFQMLYANEF--------------HVDQNDVQFPEGHMHKSMDKAYA 46 Query: 70 RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVP--VEVII 127 II+GV+ + ID + + LD + +ILR + E+ P + I Sbjct: 47 NSIINGVLSASETIDATLQPF-CKSRKVENLDKVDRAILRIALWEMTNEAD-PLEPSIAI 104 Query: 128 SEYVCIAHDFFYGDEPKFINAVLDKVSRKE 157 +E + +A DF K INA+LD ++ + Sbjct: 105 NEAIQLAKDFGSDSSYKLINAILDAYNKSK 134 >gi|39932003|sp|Q9CHN4|NUSB_LACLA RecName: Full=N utilization substance protein B homolog; Short=Protein nusB Length = 192 Score = 115 bits (289), Expect = 2e-24, Method: Composition-based stats. Identities = 34/127 (26%), Positives = 59/127 (46%), Gaps = 1/127 (0%) Query: 29 QIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLIS 88 Q+ + +SE D + E+F ++ GV+D+K+ ++ IS Sbjct: 67 QLAQAENNAQSQLSELLKNTKRFVLNYDNDRPEDLEAPEYFTQLVDGVLDKKEDLEANIS 126 Query: 89 SCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINA 148 LT+ WSFSRL ++ +IL+ E++ P V ++E V ++ DF +FIN Sbjct: 127 KYLTKTWSFSRLTLVEQAILQVSSYEILYT-ETPDVVAVNEAVELSKDFSDEKSSRFING 185 Query: 149 VLDKVSR 155 VL + Sbjct: 186 VLTNFLK 192 >gi|157738073|ref|YP_001490757.1| transcription antitermination protein NusB [Arcobacter butzleri RM4018] gi|315636425|ref|ZP_07891669.1| transcription antitermination factor NusB [Arcobacter butzleri JV22] gi|166918802|sp|A8EVW4|NUSB_ARCB4 RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|157699927|gb|ABV68087.1| transcription termination factor NusB [Arcobacter butzleri RM4018] gi|315479291|gb|EFU69980.1| transcription antitermination factor NusB [Arcobacter butzleri JV22] Length = 131 Score = 115 bits (289), Expect = 2e-24, Method: Composition-based stats. Identities = 34/140 (24%), Positives = 62/140 (44%), Gaps = 13/140 (9%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 R AR + + LY D+ T+ + E + + + D + + +G Sbjct: 4 RTQARESVIGLLYAYDLGNDGITKFVDEILEEKKIRNNQKD-----------FALNLFNG 52 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135 + ID I S L + + S + + SILR + E++ S+P +II+E + ++ Sbjct: 53 TIKNLSQIDENIVSNLNQG-TLSDIGSVEKSILRLAIYEILF-ESLPKAIIINEAIELSK 110 Query: 136 DFFYGDEPKFINAVLDKVSR 155 PKFIN +LDK+ + Sbjct: 111 RLASDGAPKFINGLLDKIVK 130 >gi|325283641|ref|YP_004256182.1| NusB antitermination factor [Deinococcus proteolyticus MRP] gi|324315450|gb|ADY26565.1| NusB antitermination factor [Deinococcus proteolyticus MRP] Length = 185 Score = 115 bits (289), Expect = 2e-24, Method: Composition-based stats. Identities = 32/161 (19%), Positives = 61/161 (37%), Gaps = 6/161 (3%) Query: 1 MTIQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESV 60 MT + ++ + R AR A +AL++ + ++ D L + Sbjct: 1 MT-RRRERSAAPTGSRRAAREFAFRALFESERGELPLEQVFMRTAAQMHEGDETLTPLTP 59 Query: 61 YLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHS 120 + + R + G+ + + + WSF ++ ++LR E++ Sbjct: 60 DA---IAFARSLAEGLDMHWDEVQAALQRTI-RGWSFEQMAQTDLNVLRLAAFEMMFTPE 115 Query: 121 VPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKR 161 P +I V IA F D +F+N VL +SR E + Sbjct: 116 -PHPPVIESAVRIARKFGGEDSGRFVNGVLGTLSRSLEGQP 155 >gi|294791859|ref|ZP_06757007.1| transcription antitermination factor NusB [Veillonella sp. 6_1_27] gi|294457089|gb|EFG25451.1| transcription antitermination factor NusB [Veillonella sp. 6_1_27] Length = 134 Score = 115 bits (289), Expect = 2e-24, Method: Composition-based stats. Identities = 34/149 (22%), Positives = 59/149 (39%), Gaps = 16/149 (10%) Query: 10 LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF 69 + R AR A Q LY + + D + +++ +D + Sbjct: 1 MVTKRNRREARQYAFQMLYANEF--------------HTDQNDVQFPEGNIHKAMDKAYA 46 Query: 70 RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIEC-HSVPVEVIIS 128 II GV+ + ID + + + LD + SILR V E+ + + I+ Sbjct: 47 NSIIEGVLSNVEAIDATLQPF-CKSRKVANLDKVDRSILRIAVWEMTNKVEPLEPSIAIN 105 Query: 129 EYVCIAHDFFYGDEPKFINAVLDKVSRKE 157 E + +A DF K INA+LD ++ + Sbjct: 106 EAIQLAKDFGSDASYKLINAILDAYNKSK 134 >gi|241889927|ref|ZP_04777225.1| transcription antitermination factor NusB [Gemella haemolysans ATCC 10379] gi|241863549|gb|EER67933.1| transcription antitermination factor NusB [Gemella haemolysans ATCC 10379] Length = 131 Score = 115 bits (289), Expect = 2e-24, Method: Composition-based stats. Identities = 32/142 (22%), Positives = 63/142 (44%), Gaps = 18/142 (12%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 R R A + L+Q++ E++ +L+ E + + + + Sbjct: 4 RHELREAVFKILFQVENTELDFIELL------------DLEQEEISTSI---YVNKTLTE 48 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135 ++++K+ ID +IS+ L + W RL + ILR E++ +P +V I+E V ++ Sbjct: 49 ILEKKEEIDEIISNNL-KDWKLERLSKMDRQILRISAYEILYS-DIPYKVSINEAVELSK 106 Query: 136 DFFY-GDEPKFINAVLDKVSRK 156 + + KFIN VL + Sbjct: 107 KYSEKDESYKFINGVLKGIVEN 128 >gi|294790502|ref|ZP_06755660.1| transcription antitermination factor NusB [Scardovia inopinata F0304] gi|294458399|gb|EFG26752.1| transcription antitermination factor NusB [Scardovia inopinata F0304] Length = 176 Score = 115 bits (289), Expect = 2e-24, Method: Composition-based stats. Identities = 33/147 (22%), Positives = 60/147 (40%), Gaps = 12/147 (8%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 R AR A+ LY+ D G ++ E + + + II G Sbjct: 3 RSTARKRALNTLYEADEKGQEILPLLDERLAFPGAQTPLP-----------AYAQDIIRG 51 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135 V ++ ID I+ + W R+ ++ +I R E++ V +V I E + +A Sbjct: 52 VASHRRTIDRAINEH-STGWDVKRMHVLDRNIARIAAWEIVYNDEVLAKVAIDEALGLAK 110 Query: 136 DFFYGDEPKFINAVLDKVSRKEEIKRS 162 + G+ P F++ +L + R E R+ Sbjct: 111 IYSDGEAPNFLHGLLSAIERDAESIRT 137 >gi|332184492|gb|AEE26746.1| Transcription termination protein NusB [Francisella cf. novicida 3523] Length = 141 Score = 115 bits (289), Expect = 2e-24, Method: Composition-based stats. Identities = 42/153 (27%), Positives = 69/153 (45%), Gaps = 13/153 (8%) Query: 10 LKLSHR-RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEW 68 +K + R R ARL VQALYQ + + E+ +Y + + D + Sbjct: 1 MKTTARARNNARLYTVQALYQKRVADNTFAELKVQYYA----------DNADRHYTDWDL 50 Query: 69 FRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIIS 128 F +I V + ID I + ++ + ++L+A + ELIEC P +VII Sbjct: 51 FYRLIDAVKSNQDIIDKYIQENSNNG--VASINYVDYAVLQAAIAELIECLENPYQVIIK 108 Query: 129 EYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKR 161 EYV I + + KF+NAVL +++ + Sbjct: 109 EYVEICYSMGTEEGYKFVNAVLQNLAKSIRGEE 141 >gi|260438372|ref|ZP_05792188.1| transcription antitermination factor NusB [Butyrivibrio crossotus DSM 2876] gi|292808958|gb|EFF68163.1| transcription antitermination factor NusB [Butyrivibrio crossotus DSM 2876] Length = 142 Score = 115 bits (288), Expect = 2e-24, Method: Composition-based stats. Identities = 30/144 (20%), Positives = 56/144 (38%), Gaps = 6/144 (4%) Query: 15 RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVI-- 72 R R + L++ + + + + D E + +D + I Sbjct: 2 NRTALRETVFKVLFRYEF--HDSESFAGQMNLFFAEYPESGDEEENWPALDSKSAEEITG 59 Query: 73 -IHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131 + ++ ID +IS +E W R+ SI+R V E++ ++ V ISE V Sbjct: 60 KVTDILCHIDEIDKVISEK-SEGWDIDRIGKAELSIMRIAVYEILYDDNIENAVSISEAV 118 Query: 132 CIAHDFFYGDEPKFINAVLDKVSR 155 +A + F+N VL K+ + Sbjct: 119 KLAKKYGDEKAYGFVNGVLAKIVK 142 >gi|297559856|ref|YP_003678830.1| NusB antitermination factor [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] gi|296844304|gb|ADH66324.1| NusB antitermination factor [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] Length = 137 Score = 115 bits (288), Expect = 3e-24, Method: Composition-based stats. Identities = 30/134 (22%), Positives = 62/134 (46%), Gaps = 14/134 (10%) Query: 24 VQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHI 83 V+ LY+ ++ S ++I R A E + ++ + V +R++ I Sbjct: 13 VEVLYEAEVRATSVEDVIR-----RRRAQPEPPIN--------DFTESLARSVDERRERI 59 Query: 84 DLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEP 143 D L+ + W+ R+ ++ +ILR G EL+ +P V I+E V +A + + P Sbjct: 60 DELLDTY-AIGWTLERMPVVDRNILRMGAYELLWADDIPDGVAIAEAVGVAKELSTDESP 118 Query: 144 KFINAVLDKVSRKE 157 F++ +L ++ + Sbjct: 119 NFVSGLLSRLMENK 132 >gi|317498987|ref|ZP_07957269.1| transcription antitermination factor NusB [Lachnospiraceae bacterium 5_1_63FAA] gi|316893736|gb|EFV15936.1| transcription antitermination factor NusB [Lachnospiraceae bacterium 5_1_63FAA] Length = 171 Score = 115 bits (288), Expect = 3e-24, Method: Composition-based stats. Identities = 32/146 (21%), Positives = 55/146 (37%), Gaps = 10/146 (6%) Query: 15 RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74 +R R + L+ ++ E E + E + + Sbjct: 36 KRSEVREHIFRILFCVEFCEKEEFEDQVELYFHGHENINEKTQKEITEKT---------E 86 Query: 75 GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134 +++ ID IS+ T W+ RL SILR E++ VP +V I+E V +A Sbjct: 87 NLIEHLDEIDEQISAH-TNAWNLERLGKAELSILRLATYEILLDEQVPRKVAINEAVELA 145 Query: 135 HDFFYGDEPKFINAVLDKVSRKEEIK 160 + FIN VL K+ + + + Sbjct: 146 KKYCNEKAAPFINGVLSKIGQDMDEE 171 >gi|329767039|ref|ZP_08258567.1| transcription antitermination factor NusB [Gemella haemolysans M341] gi|328837764|gb|EGF87389.1| transcription antitermination factor NusB [Gemella haemolysans M341] Length = 131 Score = 115 bits (288), Expect = 3e-24, Method: Composition-based stats. Identities = 32/142 (22%), Positives = 62/142 (43%), Gaps = 18/142 (12%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 R R A + L+Q++ E++ +L+ E + + + + Sbjct: 4 RHELREAVFKILFQVENTELDFIELL------------DLEQEEISTSI---YVNKTLTE 48 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135 ++++K ID +IS+ L + W RL + ILR E++ +P +V I+E V ++ Sbjct: 49 IIEKKDEIDEVISNNL-KDWKLERLSKMDRQILRISAYEILYS-DIPYKVSINEAVELSK 106 Query: 136 DFFY-GDEPKFINAVLDKVSRK 156 + + KFIN VL + Sbjct: 107 KYSEKDESYKFINGVLKGIVEN 128 >gi|217967431|ref|YP_002352937.1| NusB antitermination factor [Dictyoglomus turgidum DSM 6724] gi|254772636|sp|B8E246|NUSB_DICTD RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|217336530|gb|ACK42323.1| NusB antitermination factor [Dictyoglomus turgidum DSM 6724] Length = 144 Score = 115 bits (288), Expect = 3e-24, Method: Composition-based stats. Identities = 33/151 (21%), Positives = 63/151 (41%), Gaps = 20/151 (13%) Query: 12 LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71 +S R R ++ L+Q D+ EI ++ S + + Sbjct: 1 MSKERTRCREKVLEFLFQKDLGQ----EIEVDF--------------SDFSPQGQVFAYK 42 Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131 + G + K D +IS ++ W R+ I +ILR + E+ +P V ++E V Sbjct: 43 LYDGALYYKDLADEIISKF-SKNWKLERIGTIEKNILRMAIAEMFTFSDIPQGVTVNEAV 101 Query: 132 CIAHDFFYGDEPKFINAVLDKVSRK-EEIKR 161 +A + + +FIN +L + R +E+K+ Sbjct: 102 ELAKKYVSPEAGRFINGILRNIVRNWDEVKK 132 >gi|160945199|ref|ZP_02092425.1| hypothetical protein FAEPRAM212_02718 [Faecalibacterium prausnitzii M21/2] gi|158442930|gb|EDP19935.1| hypothetical protein FAEPRAM212_02718 [Faecalibacterium prausnitzii M21/2] gi|295105571|emb|CBL03115.1| transcription antitermination factor NusB [Faecalibacterium prausnitzii SL3/3] Length = 148 Score = 115 bits (288), Expect = 3e-24, Method: Composition-based stats. Identities = 31/141 (21%), Positives = 56/141 (39%), Gaps = 13/141 (9%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 R AR A + E +S + E+ H + R++++ Sbjct: 7 RREARENAFLLAFSQTFGDIPLAEALSNH------------AENDEEHPVDAFSRLLLNA 54 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135 D +D I S L W+ RL + ++LR V E++ V I+E V + Sbjct: 55 YYDHSAEVDDEIRSHL-RNWTMERLPRVSLTVLRLAVAEMLFGGENKPGVAINEAVELTK 113 Query: 136 DFFYGDEPKFINAVLDKVSRK 156 + G++ +F+N +L V+R Sbjct: 114 KYGAGEDYQFVNGLLGAVARD 134 >gi|327399588|ref|YP_004340457.1| NusB antitermination factor [Hippea maritima DSM 10411] gi|327182217|gb|AEA34398.1| NusB antitermination factor [Hippea maritima DSM 10411] Length = 133 Score = 115 bits (288), Expect = 3e-24, Method: Composition-based stats. Identities = 35/140 (25%), Positives = 57/140 (40%), Gaps = 14/140 (10%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 R AR AVQ +Y + + ++ + D D + + +I G Sbjct: 3 RRKARTVAVQYIYSKEFGNEDSPYAFMDFVGHPKKED------------DKAFAKKLIDG 50 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135 + I+ LI + + +I SILR G+ EL+ V+I+EYV IA Sbjct: 51 TIQNLDIINNLIKKYASAGDDI--MSLIDKSILRVGIYELLFLREAHPVVVINEYVNIAK 108 Query: 136 DFFYGDEPKFINAVLDKVSR 155 + +NA+LDKV + Sbjct: 109 ELSKESSKSLVNAILDKVYK 128 >gi|255325060|ref|ZP_05366166.1| transcription antitermination protein NusB [Corynebacterium tuberculostearicum SK141] gi|255297625|gb|EET76936.1| transcription antitermination protein NusB [Corynebacterium tuberculostearicum SK141] Length = 221 Score = 115 bits (288), Expect = 3e-24, Method: Composition-based stats. Identities = 33/141 (23%), Positives = 55/141 (39%), Gaps = 7/141 (4%) Query: 26 ALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDL 85 LY+ + I+ + + + E+ +VI+ GV + ID Sbjct: 28 ILYEAENRDVDPVAIVEDRIALA-------REDRNAVAPVAEYTQVIVKGVAEELDAIDD 80 Query: 86 LISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKF 145 IS L E W R+ + +ILR V EL+ +P + E V IA + + Sbjct: 81 TISRFLAEDWELHRIPAVDRAILRLSVWELLFNPDIPTATAVVEGVEIASQYSNDQAAPY 140 Query: 146 INAVLDKVSRKEEIKRSGCVS 166 I+AVLD V++ + Sbjct: 141 IHAVLDDVAQSRSAENPMSAE 161 >gi|148244614|ref|YP_001219308.1| N utilization substance protein B [Candidatus Vesicomyosocius okutanii HA] gi|146326441|dbj|BAF61584.1| N utilization substance protein B [Candidatus Vesicomyosocius okutanii HA] Length = 141 Score = 115 bits (288), Expect = 3e-24, Method: Composition-based stats. Identities = 35/145 (24%), Positives = 62/145 (42%), Gaps = 16/145 (11%) Query: 11 KLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFR 70 K +R R +QALYQ + G +I ++ + + +F Sbjct: 4 KTPKQRT--RERVIQALYQYLVSGGEVFQIEQQFLNQKQG------------KISKVFFS 49 Query: 71 VIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEY 130 + +++ + +D LI+S ++ L + SIL G EL VP +V+I+E Sbjct: 50 DLFINILENRFVLDELITSTISRG--TEELGSVEHSILYLGTFELKFNSEVPYKVVINES 107 Query: 131 VCIAHDFFYGDEPKFINAVLDKVSR 155 + +A + K IN LDK++R Sbjct: 108 LALAKLYGAEGSYKLINVSLDKLAR 132 >gi|304384736|ref|ZP_07367082.1| transcription antitermination factor NusB [Pediococcus acidilactici DSM 20284] gi|304328930|gb|EFL96150.1| transcription antitermination factor NusB [Pediococcus acidilactici DSM 20284] Length = 127 Score = 115 bits (288), Expect = 3e-24, Method: Composition-based stats. Identities = 30/137 (21%), Positives = 53/137 (38%), Gaps = 11/137 (8%) Query: 20 RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79 R +A + ++ + + E + + F D + ++ GV + Sbjct: 2 RESAFKMIFAQSVNPDADPEELKKQVLEEFHETDVAD----------PFLDNLVTGVQEN 51 Query: 80 KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139 I+ I L W+ +RL IL+ G E+ VP V I+E + +A + Sbjct: 52 VSSINETIGKELKAGWTVNRLANPDRVILQIGTYEIKHT-EVPNSVAINEALELAKKYTD 110 Query: 140 GDEPKFINAVLDKVSRK 156 KFIN VL V++ Sbjct: 111 EKARKFINGVLSNVAKD 127 >gi|328950344|ref|YP_004367679.1| NusB antitermination factor [Marinithermus hydrothermalis DSM 14884] gi|328450668|gb|AEB11569.1| NusB antitermination factor [Marinithermus hydrothermalis DSM 14884] Length = 152 Score = 115 bits (288), Expect = 3e-24, Method: Composition-based stats. Identities = 30/146 (20%), Positives = 60/146 (41%), Gaps = 3/146 (2%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 R AR A + L++ + E + T + + V L + R ++ G Sbjct: 2 RRKARELAFKVLFEHTLGAVPLEEAWR-HATEGLVLEDDAPYGDVLDVEGLTFARRLVEG 60 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135 + + + +D + + E WSF ++ ++LR E++ P +I V IA Sbjct: 61 YVAQAEAVDRALEETI-EGWSFGQMARTDLTVLRLAAYEMLYEP-TPYAPLIEVAVKIAK 118 Query: 136 DFFYGDEPKFINAVLDKVSRKEEIKR 161 + D +F+N VL ++ R+ + Sbjct: 119 KYGGEDSGRFVNGVLGRLKRRIDAGE 144 >gi|126643397|ref|YP_001086381.1| transcription antitermination protein NusB [Acinetobacter baumannii ATCC 17978] Length = 122 Score = 114 bits (287), Expect = 3e-24, Method: Composition-based stats. Identities = 28/103 (27%), Positives = 51/103 (49%), Gaps = 2/103 (1%) Query: 52 DTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAG 111 + E+ VDL ++ ++ V+ + + +D L+ L + LD + + LR G Sbjct: 10 EARTRAENAMHKVDLNYYHELLTQVIAQHEDLDALLIPVLDRE--IDALDGVELATLRLG 67 Query: 112 VLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVS 154 EL + +P V++ E + +A F D K+IN VLD++S Sbjct: 68 AYELRDHLEIPYRVVLDEAIELAKHFGGADSHKYINGVLDRLS 110 >gi|311739520|ref|ZP_07713355.1| N utilization substance protein B [Corynebacterium pseudogenitalium ATCC 33035] gi|311305336|gb|EFQ81404.1| N utilization substance protein B [Corynebacterium pseudogenitalium ATCC 33035] Length = 221 Score = 114 bits (287), Expect = 3e-24, Method: Composition-based stats. Identities = 33/141 (23%), Positives = 55/141 (39%), Gaps = 7/141 (4%) Query: 26 ALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDL 85 LY+ + I+ + + + E+ +VI+ GV + ID Sbjct: 28 ILYEAENRDVDPVAIVEDRIALA-------REDRNAVAPVAEYTQVIVKGVAEELDAIDD 80 Query: 86 LISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKF 145 IS L E W R+ + +ILR V EL+ +P + E V IA + + Sbjct: 81 TISRFLAEDWELHRIPAVDRAILRLSVWELLFNPDIPTATAVVEGVEIASQYSNDQAAPY 140 Query: 146 INAVLDKVSRKEEIKRSGCVS 166 I+AVLD V++ + Sbjct: 141 IHAVLDDVAQSRSAENPMSAE 161 >gi|218296634|ref|ZP_03497352.1| NusB antitermination factor [Thermus aquaticus Y51MC23] gi|218242947|gb|EED09480.1| NusB antitermination factor [Thermus aquaticus Y51MC23] Length = 151 Score = 114 bits (287), Expect = 3e-24, Method: Composition-based stats. Identities = 29/143 (20%), Positives = 55/143 (38%), Gaps = 4/143 (2%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 R AR A++AL+ G E + E + + R ++ G Sbjct: 2 RRRARELAMRALFAHTQGGVDLEEALR--HALEEMGGEEEPYGDPLDEEGVVFARRLLLG 59 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135 ++ +D ++ E W F ++ +ILR E++ P +I V IA+ Sbjct: 60 YKAHQEEVDRILKET-VEGWDFGQMAKTDLTILRLATYEMLYEP-TPFAPLIEVAVKIAN 117 Query: 136 DFFYGDEPKFINAVLDKVSRKEE 158 + F+N VL ++ R+ + Sbjct: 118 RYGGEHSGAFVNGVLGRLYRRIQ 140 >gi|326406239|gb|ADZ63310.1| transcription antitermination factor [Lactococcus lactis subsp. lactis CV56] Length = 323 Score = 114 bits (287), Expect = 4e-24, Method: Composition-based stats. Identities = 34/127 (26%), Positives = 59/127 (46%), Gaps = 1/127 (0%) Query: 29 QIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLIS 88 Q+ + +SE D + E+F ++ GV+D+K+ ++ IS Sbjct: 198 QLAQAENNAQSQLSELLKNTKRFVLNYDNDRPEDLEAPEYFTQLVDGVLDKKEDLEANIS 257 Query: 89 SCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINA 148 LT+ WSFSRL ++ +IL+ E++ P V ++E V ++ DF +FIN Sbjct: 258 KYLTKTWSFSRLTLVEQAILQVSSYEILYT-ETPDVVAVNEAVELSKDFSDEKSSRFING 316 Query: 149 VLDKVSR 155 VL + Sbjct: 317 VLTNFLK 323 >gi|281491193|ref|YP_003353173.1| transcription antitermination factor [Lactococcus lactis subsp. lactis KF147] gi|281374934|gb|ADA64452.1| Transcription antitermination factor [Lactococcus lactis subsp. lactis KF147] Length = 323 Score = 114 bits (287), Expect = 4e-24, Method: Composition-based stats. Identities = 33/127 (25%), Positives = 58/127 (45%), Gaps = 1/127 (0%) Query: 29 QIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLIS 88 Q+ + +SE D + E+F ++ GV+D+K+ ++ IS Sbjct: 198 QLAQAENNAQSQLSELLKNTKRFVLNYDNDRPEDLEAPEYFTQLVDGVLDKKEDLEANIS 257 Query: 89 SCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINA 148 L + WSFSRL ++ +IL+ E++ P V ++E V ++ DF +FIN Sbjct: 258 KYLAKTWSFSRLTLVEQAILQVSSYEILYT-ETPDVVAVNEAVELSKDFSDEKSSRFING 316 Query: 149 VLDKVSR 155 VL + Sbjct: 317 VLTNFLK 323 >gi|23296076|gb|AAN12293.1| transcription termination factor [Aquifex pyrophilus] Length = 144 Score = 114 bits (287), Expect = 4e-24, Method: Composition-based stats. Identities = 40/152 (26%), Positives = 60/152 (39%), Gaps = 13/152 (8%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 R AR A LY+ D+ G +EI E + + E+ + ++ Sbjct: 4 RKSARDTAFLVLYRWDLRGDKPSEIFKEVVEEKNIQNKNT----------YEYAKKLVET 53 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSV-PVEVIISEYVCIA 134 ++ ID +I L + WS RL + + LR GV EL+ S P V I + I Sbjct: 54 TVNNISEIDAIIEKHL-KGWSIDRLGYVERNALRLGVAELLFLKSQEPGRVFID-IIDIV 111 Query: 135 HDFFYGDEPKFINAVLDKVSRKEEIKRSGCVS 166 F KF+N VL + R K+ V Sbjct: 112 KKFTDEKAAKFVNGVLSAIYRSFLEKKKEKVK 143 >gi|15672676|ref|NP_266850.1| hypothetical protein L92686 [Lactococcus lactis subsp. lactis Il1403] gi|12723603|gb|AAK04792.1|AE006302_10 transcription termination protein NusB [Lactococcus lactis subsp. lactis Il1403] Length = 323 Score = 114 bits (287), Expect = 4e-24, Method: Composition-based stats. Identities = 34/127 (26%), Positives = 59/127 (46%), Gaps = 1/127 (0%) Query: 29 QIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLIS 88 Q+ + +SE D + E+F ++ GV+D+K+ ++ IS Sbjct: 198 QLAQAENNAQSQLSELLKNTKRFVLNYDNDRPEDLEAPEYFTQLVDGVLDKKEDLEANIS 257 Query: 89 SCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINA 148 LT+ WSFSRL ++ +IL+ E++ P V ++E V ++ DF +FIN Sbjct: 258 KYLTKTWSFSRLTLVEQAILQVSSYEILYT-ETPDVVAVNEAVELSKDFSDEKSSRFING 316 Query: 149 VLDKVSR 155 VL + Sbjct: 317 VLTNFLK 323 >gi|257439489|ref|ZP_05615244.1| transcription antitermination factor NusB [Faecalibacterium prausnitzii A2-165] gi|257198061|gb|EEU96345.1| transcription antitermination factor NusB [Faecalibacterium prausnitzii A2-165] Length = 147 Score = 114 bits (286), Expect = 4e-24, Method: Composition-based stats. Identities = 26/142 (18%), Positives = 54/142 (38%), Gaps = 13/142 (9%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 R AR A + E + + +DV + + ++ Sbjct: 7 RREARENAFLLAFSQTFGDVPLQEALDTNNEC--GEERPVDV----------FGQRLLSA 54 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135 +D LI L W+ RL + ++LR + E++ V+I+E V + Sbjct: 55 YYSHSAEVDDLIRDHL-RNWTMERLPRVSLTVLRLALAEMLYGDERKPGVVINEAVELTK 113 Query: 136 DFFYGDEPKFINAVLDKVSRKE 157 + ++ +F+N +L V+R++ Sbjct: 114 KYGADEDYQFVNGLLGAVAREQ 135 >gi|297626339|ref|YP_003688102.1| Transcription antitermination factor (N utilization substance protein B homolog) [Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1] gi|296922104|emb|CBL56672.1| Transcription antitermination factor (N utilization substance protein B homolog) [Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1] Length = 208 Score = 114 bits (286), Expect = 4e-24, Method: Composition-based stats. Identities = 31/141 (21%), Positives = 62/141 (43%), Gaps = 14/141 (9%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 R AR A+ L+Q D+ + +R A E ++ R I+ G Sbjct: 38 RTKARKQALDVLFQADLRNEAV---------HRTMARRTEQGEPAL----RDFTRQILDG 84 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135 + I+ I LT W+ R+ + ++ R V EL + ++ ++V ISE + +A+ Sbjct: 85 YSEHGHEINEHIDRALTGDWTLERMSRVDRNLARIAVWEL-DFTTIDLKVAISEAMELAN 143 Query: 136 DFFYGDEPKFINAVLDKVSRK 156 + + F+N +L +++ + Sbjct: 144 ELSNDESVTFLNGLLARIAEE 164 >gi|15605713|ref|NP_213090.1| transcription antitermination protein NusB [Aquifex aeolicus VF5] gi|7387972|sp|O66530|NUSB_AQUAE RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|168177029|pdb|2JR0|A Chain A, Solution Structure Of Nusb From Aquifex Aeolicus gi|2982871|gb|AAC06491.1| transcription termination NusB [Aquifex aeolicus VF5] Length = 148 Score = 114 bits (286), Expect = 4e-24, Method: Composition-based stats. Identities = 36/141 (25%), Positives = 58/141 (41%), Gaps = 13/141 (9%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 R AR A LY+ D+ G + E+ E + + + E+ + ++ Sbjct: 4 RKGARDTAFLVLYRWDLRGENPGELFKEVVEEKNIKNKDA----------YEYAKKLVDT 53 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSV-PVEVIISEYVCIA 134 + + ID +I L + WS RL + + LR GV ELI S P V I V + Sbjct: 54 AVRHIEEIDSIIEKHL-KGWSIDRLGYVERNALRLGVAELIFLKSKEPGRVFID-IVDLV 111 Query: 135 HDFFYGDEPKFINAVLDKVSR 155 + KF+N VL + + Sbjct: 112 KKYADEKAGKFVNGVLSAIYK 132 >gi|332077717|gb|EGI88178.1| transcription antitermination factor NusB [Streptococcus pneumoniae GA41301] Length = 121 Score = 114 bits (286), Expect = 4e-24, Method: Composition-based stats. Identities = 24/92 (26%), Positives = 45/92 (48%), Gaps = 1/92 (1%) Query: 67 EWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVI 126 + ++ V +K+ +D I+ L W+ RL ++ ++LR GV E+ P V Sbjct: 30 AFLIDLVSDVQAKKEELDKQITQHLKAGWTIERLTLVERNLLRLGVFEITSF-DTPQLVA 88 Query: 127 ISEYVCIAHDFFYGDEPKFINAVLDKVSRKEE 158 ++E + +A DF +FIN +L + +E Sbjct: 89 VNEAIELAKDFSDQKSARFINGLLSQFVTEEN 120 >gi|294793720|ref|ZP_06758857.1| transcription antitermination factor NusB [Veillonella sp. 3_1_44] gi|294455290|gb|EFG23662.1| transcription antitermination factor NusB [Veillonella sp. 3_1_44] Length = 134 Score = 114 bits (286), Expect = 4e-24, Method: Composition-based stats. Identities = 33/149 (22%), Positives = 59/149 (39%), Gaps = 16/149 (10%) Query: 10 LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF 69 + R AR A Q LY + + D + +++ +D + Sbjct: 1 MVTKRNRREARQYAFQMLYANEF--------------HTDQNDVQFPEGNIHKAMDKAYA 46 Query: 70 RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIEC-HSVPVEVIIS 128 II GV+ + ID + + + LD + SILR V E+ + + I+ Sbjct: 47 NSIIEGVLSNVEAIDATLQPF-CKSRKVANLDKVDRSILRIAVWEMNNKVEPLEPSIAIN 105 Query: 129 EYVCIAHDFFYGDEPKFINAVLDKVSRKE 157 E + +A +F K INA+LD ++ + Sbjct: 106 EAIQLAKEFGSDASYKLINAILDAYNKSK 134 >gi|86151316|ref|ZP_01069531.1| transcription antitermination factor NusB [Campylobacter jejuni subsp. jejuni 260.94] gi|86153756|ref|ZP_01071959.1| transcription antitermination factor NusB [Campylobacter jejuni subsp. jejuni HB93-13] gi|121612229|ref|YP_001000093.1| transcription antitermination protein NusB [Campylobacter jejuni subsp. jejuni 81-176] gi|157414677|ref|YP_001481933.1| transcription antitermination protein NusB [Campylobacter jejuni subsp. jejuni 81116] gi|283955805|ref|ZP_06373296.1| transcription antitermination factor NusB [Campylobacter jejuni subsp. jejuni 1336] gi|315123942|ref|YP_004065946.1| transcription antitermination factor NusB [Campylobacter jejuni subsp. jejuni ICDCCJ07001] gi|166215678|sp|A1VYA2|NUSB_CAMJJ RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|172047054|sp|A8FKG9|NUSB_CAMJ8 RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|85841663|gb|EAQ58910.1| transcription antitermination factor NusB [Campylobacter jejuni subsp. jejuni 260.94] gi|85842717|gb|EAQ59929.1| transcription antitermination factor NusB [Campylobacter jejuni subsp. jejuni HB93-13] gi|87250180|gb|EAQ73138.1| transcription antitermination factor NusB [Campylobacter jejuni subsp. jejuni 81-176] gi|157385641|gb|ABV51956.1| transcription termination protein [Campylobacter jejuni subsp. jejuni 81116] gi|283792760|gb|EFC31538.1| transcription antitermination factor NusB [Campylobacter jejuni subsp. jejuni 1336] gi|307747317|gb|ADN90587.1| N utilization substance protein B-like protein [Campylobacter jejuni subsp. jejuni M1] gi|315017664|gb|ADT65757.1| transcription antitermination factor NusB [Campylobacter jejuni subsp. jejuni ICDCCJ07001] gi|315932685|gb|EFV11615.1| transcription antitermination factor NusB [Campylobacter jejuni subsp. jejuni 327] Length = 132 Score = 114 bits (286), Expect = 5e-24, Method: Composition-based stats. Identities = 33/146 (22%), Positives = 64/146 (43%), Gaps = 20/146 (13%) Query: 16 RGIARLAAVQALYQIDIIGCS---TTEIISEYETYRFCADTELDVESVYLHVDLEWFRVI 72 R R + + LY ++ + EI+ E + + + + Sbjct: 4 RHQVRQSVISLLYAFELNSQNNVFVDEILDEKKIRNEQKN---------------FTLNL 48 Query: 73 IHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVC 132 HG++D +ID ++S L + + L + +ILR G EL+ P ++I+E + Sbjct: 49 YHGILDNLNNIDETLNSFLNDN-QITALGHVERAILRLGAYELLFT-DTPSAIVINEAIE 106 Query: 133 IAHDFFYGDEPKFINAVLDKVSRKEE 158 +A + + PKFIN VLD + + ++ Sbjct: 107 LAKELANDNSPKFINGVLDALIKAKK 132 >gi|269797978|ref|YP_003311878.1| NusB antitermination factor [Veillonella parvula DSM 2008] gi|269094607|gb|ACZ24598.1| NusB antitermination factor [Veillonella parvula DSM 2008] Length = 134 Score = 114 bits (286), Expect = 5e-24, Method: Composition-based stats. Identities = 33/149 (22%), Positives = 59/149 (39%), Gaps = 16/149 (10%) Query: 10 LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF 69 + R AR A Q LY + + D + +++ +D + Sbjct: 1 MVTKRNRREARQYAFQMLYANEF--------------HTDQNDVQFPEGNIHKAMDKAYA 46 Query: 70 RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIEC-HSVPVEVIIS 128 II GV+ + ID + + + LD + SILR V E+ + + I+ Sbjct: 47 NSIIEGVLSNAEAIDATLQPF-CKSRKVANLDKVDRSILRIAVWEMNNKVEPLEPSIAIN 105 Query: 129 EYVCIAHDFFYGDEPKFINAVLDKVSRKE 157 E + +A +F K INA+LD ++ + Sbjct: 106 EAIQLAKEFGSDASYKLINAILDAYNKSK 134 >gi|167766576|ref|ZP_02438629.1| hypothetical protein CLOSS21_01082 [Clostridium sp. SS2/1] gi|167711699|gb|EDS22278.1| hypothetical protein CLOSS21_01082 [Clostridium sp. SS2/1] Length = 167 Score = 114 bits (286), Expect = 5e-24, Method: Composition-based stats. Identities = 32/146 (21%), Positives = 55/146 (37%), Gaps = 10/146 (6%) Query: 15 RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74 +R R + L+ ++ E E + E + + Sbjct: 32 KRSEVREHIFRILFCVEFCEKEEFEDQVELYFHGHENINEKTQKEITEKT---------E 82 Query: 75 GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134 +++ ID IS+ T W+ RL SILR E++ VP +V I+E V +A Sbjct: 83 NLIEHLDEIDEQISAH-TNAWNLERLGKAELSILRLATYEILLDEQVPRKVAINEAVELA 141 Query: 135 HDFFYGDEPKFINAVLDKVSRKEEIK 160 + FIN VL K+ + + + Sbjct: 142 KKYCNEKAAPFINGVLSKIGQDMDEE 167 >gi|332637334|ref|ZP_08416197.1| transcription antitermination protein NusB [Weissella cibaria KACC 11862] Length = 140 Score = 114 bits (286), Expect = 5e-24, Method: Composition-based stats. Identities = 33/140 (23%), Positives = 65/140 (46%), Gaps = 8/140 (5%) Query: 13 SHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVI 72 S R R AA Q+++ + + + E + + + D E + + Sbjct: 3 SLNRHQLRQAAFQSVFGLAMNPDAQVEAVVQ-------QVLDGDPEITWEDELPTDLLDM 55 Query: 73 IHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVC 132 ++G++D + DL IS L + W+ RL++ ++R + E+ P ++ ++E + Sbjct: 56 VNGIVDHQDEFDLTISEYLADGWTIDRLNLADVVLMRVAMYEVKYA-ETPAKIAVNEALQ 114 Query: 133 IAHDFFYGDEPKFINAVLDK 152 +AHDF KFIN +L+K Sbjct: 115 LAHDFTDDASRKFINGILNK 134 >gi|154483655|ref|ZP_02026103.1| hypothetical protein EUBVEN_01359 [Eubacterium ventriosum ATCC 27560] gi|149735565|gb|EDM51451.1| hypothetical protein EUBVEN_01359 [Eubacterium ventriosum ATCC 27560] Length = 131 Score = 114 bits (285), Expect = 5e-24, Method: Composition-based stats. Identities = 28/139 (20%), Positives = 56/139 (40%), Gaps = 10/139 (7%) Query: 15 RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74 R R + LY D S E+ +Y+ + + D ++ + Sbjct: 2 NRVKLRENTFKLLYCNDFHNRS--EMPKQYDLFW-------EETPEVSEEDRKFISNRVD 52 Query: 75 GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134 + ++ ID I+ + W+ R+ + +ILR E+ +P +V + + + +A Sbjct: 53 AIAEKIDEIDEAINKAAVK-WTTDRMSKVDLTILRLAYYEMKIDEDIPEKVAVDQAIELA 111 Query: 135 HDFFYGDEPKFINAVLDKV 153 + D P F+N VL K+ Sbjct: 112 KKYGTDDSPSFVNGVLAKL 130 >gi|227534863|ref|ZP_03964912.1| transcription antitermination protein NusB [Lactobacillus paracasei subsp. paracasei ATCC 25302] gi|227187619|gb|EEI67686.1| transcription antitermination protein NusB [Lactobacillus paracasei subsp. paracasei ATCC 25302] Length = 139 Score = 114 bits (285), Expect = 5e-24, Method: Composition-based stats. Identities = 26/108 (24%), Positives = 50/108 (46%), Gaps = 6/108 (5%) Query: 52 DTELDVESVYLHV------DLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILC 105 + E D ++VY V + ++ GV+ ++ +D ++ L + W+ SRL Sbjct: 25 NPEADKDAVYAEVLPQDTEVPAYLTTLVEGVLSKQADLDAALTPQLKKGWTLSRLTKPDL 84 Query: 106 SILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKV 153 ILR G+ E+ ++P I+E + +A + KF+N +L Sbjct: 85 IILRLGLYEIRYEEAMPEAAAINEAINLAKRYSDDQSAKFVNGILANF 132 >gi|167747003|ref|ZP_02419130.1| hypothetical protein ANACAC_01715 [Anaerostipes caccae DSM 14662] gi|317471818|ref|ZP_07931155.1| transcription antitermination factor NusB [Anaerostipes sp. 3_2_56FAA] gi|167653963|gb|EDR98092.1| hypothetical protein ANACAC_01715 [Anaerostipes caccae DSM 14662] gi|316900709|gb|EFV22686.1| transcription antitermination factor NusB [Anaerostipes sp. 3_2_56FAA] Length = 131 Score = 114 bits (285), Expect = 6e-24, Method: Composition-based stats. Identities = 29/138 (21%), Positives = 59/138 (42%), Gaps = 10/138 (7%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 R R + + ID ++ E ++ + Y D + + + ++ + Sbjct: 3 RSKLREQMFRLCFSIDF--HTSEEFEAQADLYFSNND-------FFRNKEKDYIKTRTLD 53 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135 ++ R + ID I+ ++ W RL +ILR V E++ +P +V I+E V ++ Sbjct: 54 MLSRLEEIDQKINEN-SKGWDIKRLGKAELTILRIAVYEIMFDEDIPDKVAINEAVELSK 112 Query: 136 DFFYGDEPKFINAVLDKV 153 + FIN +L K+ Sbjct: 113 TYCNEKAASFINGILGKI 130 >gi|167627528|ref|YP_001678028.1| transcription termination factor [Francisella philomiragia subsp. philomiragia ATCC 25017] gi|241668097|ref|ZP_04755675.1| transcription termination factor [Francisella philomiragia subsp. philomiragia ATCC 25015] gi|254876632|ref|ZP_05249342.1| transcription termination factor [Francisella philomiragia subsp. philomiragia ATCC 25015] gi|167597529|gb|ABZ87527.1| transcription termination factor [Francisella philomiragia subsp. philomiragia ATCC 25017] gi|254842653|gb|EET21067.1| transcription termination factor [Francisella philomiragia subsp. philomiragia ATCC 25015] Length = 141 Score = 114 bits (285), Expect = 6e-24, Method: Composition-based stats. Identities = 38/153 (24%), Positives = 70/153 (45%), Gaps = 13/153 (8%) Query: 10 LKLSHR-RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEW 68 +K + R R ARL VQALYQ + + +E+ ++Y + + D + Sbjct: 1 MKTTARARNNARLYTVQALYQKKVADHTFSELKTQYYA----------DNAERHYTDWDL 50 Query: 69 FRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIIS 128 F ++ V + + I+ I ++ + ++L+ + ELIEC P ++II Sbjct: 51 FYRLMDAVRENQDTINNYIQDNSKNG--IESINYVDYAVLQVAIAELIECLENPYQIIIK 108 Query: 129 EYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKR 161 EYV I + + KF+NAVL +++ + Sbjct: 109 EYVEICYSMGTEEGYKFVNAVLQNLAKSIRGEE 141 >gi|190570484|ref|YP_001974842.1| N utilization substance protein B [Wolbachia endosymbiont of Culex quinquefasciatus Pel] gi|213019243|ref|ZP_03335050.1| N utilization substance protein B [Wolbachia endosymbiont of Culex quinquefasciatus JHB] gi|190356756|emb|CAQ54115.1| N utilization substance protein B [Wolbachia endosymbiont of Culex quinquefasciatus Pel] gi|212995352|gb|EEB55993.1| N utilization substance protein B [Wolbachia endosymbiont of Culex quinquefasciatus JHB] Length = 160 Score = 114 bits (285), Expect = 7e-24, Method: Composition-based stats. Identities = 45/161 (27%), Positives = 74/161 (45%), Gaps = 3/161 (1%) Query: 3 IQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYL 62 +++ D K +R AR AVQ Y + + + E + T D+ Sbjct: 1 MEEKPVDKKWRIKRSTARFLAVQIAYSNIFVSYNKSTFKLENCELKDYISTLKDIFECE- 59 Query: 63 HVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVP 122 + ++ ++ V+ + D +I S L WS SRL++I SILR V ELI+ P Sbjct: 60 EFEHQFLENLLCKVIKSSEEYDKIIESYLHPSWSLSRLNLISLSILRIAVCELIDF-DTP 118 Query: 123 VEVIISEYVCIAHDFFY-GDEPKFINAVLDKVSRKEEIKRS 162 ++I+EY IA D ++ FIN +LDKV + ++ Sbjct: 119 APIVINEYTNIASDLLDAPNKIGFINGLLDKVKDAVRLNKN 159 >gi|116495122|ref|YP_806856.1| transcription antitermination protein NusB [Lactobacillus casei ATCC 334] gi|122263461|sp|Q038F8|NUSB_LACC3 RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|116105272|gb|ABJ70414.1| NusB antitermination factor [Lactobacillus casei ATCC 334] Length = 135 Score = 113 bits (284), Expect = 7e-24, Method: Composition-based stats. Identities = 26/108 (24%), Positives = 50/108 (46%), Gaps = 6/108 (5%) Query: 52 DTELDVESVYLHV------DLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILC 105 + E D ++VY V + ++ GV+ ++ +D ++ L + W+ SRL Sbjct: 21 NPEADKDAVYAEVLPQDTEVPAYLTTLVEGVLSKQADLDAALTPQLKKGWTLSRLTKPDL 80 Query: 106 SILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKV 153 ILR G+ E+ ++P I+E + +A + KF+N +L Sbjct: 81 IILRLGLYEIRYEEAMPEAAAINEAINLAKRYSDDQSAKFVNGILANF 128 >gi|154149182|ref|YP_001405652.1| transcription antitermination protein NusB [Campylobacter hominis ATCC BAA-381] gi|166215676|sp|A7HZG1|NUSB_CAMHC RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|153805191|gb|ABS52198.1| transcription antitermination factor NusB [Campylobacter hominis ATCC BAA-381] Length = 131 Score = 113 bits (284), Expect = 8e-24, Method: Composition-based stats. Identities = 34/140 (24%), Positives = 63/140 (45%), Gaps = 14/140 (10%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 R R A V LY ++ G + +SEY + + + ++ + +G Sbjct: 4 RHQVRNAVVSLLYAKEM-GSEMNDFVSEYLEEKRIRNDQ-----------RKFADKLFNG 51 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135 V ID + L E + S++ + +ILR G E++ ++ +II+E + +A Sbjct: 52 VCKNVNQIDNELDKYLNE-YKISQIGTVERAILRLGAYEIMY-EAIDKAIIINEAIELAK 109 Query: 136 DFFYGDEPKFINAVLDKVSR 155 + PKFIN VLD++ + Sbjct: 110 ELAGESSPKFINGVLDRIGK 129 >gi|283955145|ref|ZP_06372647.1| transcription antitermination factor NusB [Campylobacter jejuni subsp. jejuni 414] gi|283793358|gb|EFC32125.1| transcription antitermination factor NusB [Campylobacter jejuni subsp. jejuni 414] Length = 132 Score = 113 bits (284), Expect = 9e-24, Method: Composition-based stats. Identities = 33/143 (23%), Positives = 63/143 (44%), Gaps = 14/143 (9%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 R R + + LY ++ + I E+ E + + + HG Sbjct: 4 RHQVRQSVISLLYAFELNSQNDVFI------------DEILDEKKIRNEQKNFTLNLYHG 51 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135 ++D +ID ++S L + + L + +ILR G EL+ P ++I+E + +A Sbjct: 52 ILDNLSNIDETLNSFLNDN-QITALGHVERAILRLGAYELLFS-DTPSAIVINEAIELAK 109 Query: 136 DFFYGDEPKFINAVLDKVSRKEE 158 + + PKFIN VLD + + ++ Sbjct: 110 ELANDNSPKFINGVLDALIKAKK 132 >gi|191638628|ref|YP_001987794.1| transcription antitermination protein NusB [Lactobacillus casei BL23] gi|238693054|sp|B3WEY5|NUSB_LACCB RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|190712930|emb|CAQ66936.1| N utilization substance protein B homolog (Protein nusB) [Lactobacillus casei BL23] gi|327382670|gb|AEA54146.1| Transcription termination protein nusB [Lactobacillus casei LC2W] gi|327385864|gb|AEA57338.1| Transcription termination protein nusB [Lactobacillus casei BD-II] Length = 135 Score = 113 bits (283), Expect = 9e-24, Method: Composition-based stats. Identities = 27/108 (25%), Positives = 50/108 (46%), Gaps = 6/108 (5%) Query: 52 DTELDVESVYLHV------DLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILC 105 + E D ++VY V + ++ GV+ ++ +D ++ L + WS SRL Sbjct: 21 NPEADKDAVYAEVLPQDTEVPAYLTTLVEGVLSKQADLDAALTPQLKKGWSLSRLTKPDL 80 Query: 106 SILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKV 153 ILR G+ E+ ++P I+E + +A + KF+N +L Sbjct: 81 IILRLGLYEIRYEEAMPEAAAINEAINLAKRYSDDQSAKFVNGILANF 128 >gi|57237437|ref|YP_178450.1| transcription antitermination protein NusB [Campylobacter jejuni RM1221] gi|86148965|ref|ZP_01067197.1| transcription antitermination factor NusB [Campylobacter jejuni subsp. jejuni CF93-6] gi|88597364|ref|ZP_01100599.1| transcription antitermination factor NusB [Campylobacter jejuni subsp. jejuni 84-25] gi|148926474|ref|ZP_01810157.1| transcription termination protein [Campylobacter jejuni subsp. jejuni CG8486] gi|205355968|ref|ZP_03222736.1| transcription termination protein [Campylobacter jejuni subsp. jejuni CG8421] gi|218562040|ref|YP_002343819.1| transcription antitermination protein NusB [Campylobacter jejuni subsp. jejuni NCTC 11168] gi|22095973|sp|Q9PIC0|NUSB_CAMJE RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|73621331|sp|Q5HW85|NUSB_CAMJR RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|57166241|gb|AAW35020.1| transcription antitermination factor NusB [Campylobacter jejuni RM1221] gi|85840323|gb|EAQ57580.1| transcription antitermination factor NusB [Campylobacter jejuni subsp. jejuni CF93-6] gi|88190425|gb|EAQ94399.1| transcription antitermination factor NusB [Campylobacter jejuni subsp. jejuni 84-25] gi|112359746|emb|CAL34532.1| transcription termination protein [Campylobacter jejuni subsp. jejuni NCTC 11168] gi|145844637|gb|EDK21743.1| transcription termination protein [Campylobacter jejuni subsp. jejuni CG8486] gi|205346092|gb|EDZ32727.1| transcription termination protein [Campylobacter jejuni subsp. jejuni CG8421] gi|284925653|gb|ADC28005.1| transcription antitermination protein NusB [Campylobacter jejuni subsp. jejuni IA3902] gi|315057805|gb|ADT72134.1| Transcription termination protein NusB [Campylobacter jejuni subsp. jejuni S3] gi|315926706|gb|EFV06085.1| transcription antitermination factor NusB [Campylobacter jejuni subsp. jejuni DFVF1099] Length = 132 Score = 113 bits (283), Expect = 1e-23, Method: Composition-based stats. Identities = 32/146 (21%), Positives = 64/146 (43%), Gaps = 20/146 (13%) Query: 16 RGIARLAAVQALYQIDIIGCS---TTEIISEYETYRFCADTELDVESVYLHVDLEWFRVI 72 R R + + LY ++ + EI+ E + + + + Sbjct: 4 RHQVRQSVISLLYAFELNSQNNVFVDEILDEKKIRNEQKN---------------FTLNL 48 Query: 73 IHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVC 132 +G++D +ID ++S L + + L + +ILR G EL+ P ++I+E + Sbjct: 49 YNGILDNLNNIDETLNSFLNDN-QITALGHVERAILRLGAYELLFT-DTPSAIVINEAIE 106 Query: 133 IAHDFFYGDEPKFINAVLDKVSRKEE 158 +A + + PKFIN VLD + + ++ Sbjct: 107 LAKELANDNSPKFINGVLDALIKAKK 132 >gi|114776397|ref|ZP_01451442.1| transcription antitermination protein NusB [Mariprofundus ferrooxydans PV-1] gi|114553227|gb|EAU55625.1| transcription antitermination protein NusB [Mariprofundus ferrooxydans PV-1] Length = 145 Score = 113 bits (283), Expect = 1e-23, Method: Composition-based stats. Identities = 32/146 (21%), Positives = 59/146 (40%), Gaps = 15/146 (10%) Query: 14 HRRGIARLAAVQALYQIDIIGCS---TTEIISEYETYRFCADTELDVESVYLHVDLEWFR 70 R AR + ++ LY E+++ + AD D + R Sbjct: 2 ANRHQARESVLETLYAWSSAQQDSGMIPELLASRLQHEERADQ-----------DESYLR 50 Query: 71 VIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEY 130 ++G+ D +D LI + S + I +++R V E+ +P VII+E Sbjct: 51 EAVYGITDHTDALDELIKTA-VRGRSLRSVAQIEINVIRLAVWEMQNRLEIPYRVIINEA 109 Query: 131 VCIAHDFFYGDEPKFINAVLDKVSRK 156 + + D+ FIN VLD ++++ Sbjct: 110 LELTRDYAGEPPRGFINGVLDNLAKQ 135 >gi|291562672|emb|CBL41488.1| transcription antitermination factor NusB [butyrate-producing bacterium SS3/4] Length = 139 Score = 112 bits (282), Expect = 1e-23, Method: Composition-based stats. Identities = 27/104 (25%), Positives = 48/104 (46%), Gaps = 1/104 (0%) Query: 53 TELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGV 112 E+ + D + + +M+ ID I+ + E W R+ + +ILR V Sbjct: 35 DEILHDPFEKEEDRAYLEKRVEKIMELIPEIDEKINE-IAEGWRTRRMGKVELTILRLAV 93 Query: 113 LELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRK 156 E+ +P +V I+E V +A F + P F+N +L K+ +K Sbjct: 94 FEMKYDEEIPEKVAINEAVELAKKFGGDEAPAFVNGILAKLIQK 137 >gi|227833206|ref|YP_002834913.1| N utilization substance protein B [Corynebacterium aurimucosum ATCC 700975] gi|262184192|ref|ZP_06043613.1| N utilization substance protein B [Corynebacterium aurimucosum ATCC 700975] gi|259514808|sp|C3PGM1|NUSB_CORA7 RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|227454222|gb|ACP32975.1| N utilization substance protein B [Corynebacterium aurimucosum ATCC 700975] Length = 176 Score = 112 bits (282), Expect = 1e-23, Method: Composition-based stats. Identities = 30/145 (20%), Positives = 60/145 (41%), Gaps = 7/145 (4%) Query: 26 ALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDL 85 L++ + I+ + D E V + ++ R I+ G + ID Sbjct: 24 ILFEAESRDVDPVAIVEDRVE--LARDPENGVAPI-----ADYTREIVSGAAEELDAIDD 76 Query: 86 LISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKF 145 I+ L+ +WS R+ + +I+R V E++ VP + E V +A ++ + Sbjct: 77 AIARYLSSEWSLERIPAVDRAIMRVSVWEILFNADVPNATALVEGVELASEYSNDKAAPY 136 Query: 146 INAVLDKVSRKEEIKRSGCVSAITQ 170 I+AVLD V + + ++ + Sbjct: 137 IHAVLDDVIQAQSADSPMAPASAEE 161 >gi|229552487|ref|ZP_04441212.1| transcription antitermination protein NusB [Lactobacillus rhamnosus LMS2-1] gi|229314039|gb|EEN80012.1| transcription antitermination protein NusB [Lactobacillus rhamnosus LMS2-1] Length = 139 Score = 112 bits (282), Expect = 1e-23, Method: Composition-based stats. Identities = 28/108 (25%), Positives = 50/108 (46%), Gaps = 6/108 (5%) Query: 52 DTELDVESVYLHV---DLE---WFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILC 105 + E D +VY V D E + ++ GV+ + +D ++ L + W+ SRL Sbjct: 25 NPEADKNAVYAEVLPKDTEVPSYLTALVEGVLANQAALDAALTPQLKKGWTLSRLTKPDL 84 Query: 106 SILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKV 153 ILR G+ E+ ++P I+E + +A + KF+N +L Sbjct: 85 IILRLGLYEIRYEEAMPEAAAINEAINLAKRYSDEQSAKFVNGILANF 132 >gi|308272930|emb|CBX29534.1| N utilization substance protein B homolog [uncultured Desulfobacterium sp.] Length = 90 Score = 112 bits (282), Expect = 1e-23, Method: Composition-based stats. Identities = 24/80 (30%), Positives = 42/80 (52%), Gaps = 3/80 (3%) Query: 82 HIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGD 141 ID +I + W SR+ + +I+R V EL+ C +P +V I+E + I + + Sbjct: 6 EIDGIIERF-SSNWKISRMSCVDRNIMRIAVFELVWCDDIPCKVSINEAIDIGKKYGTDE 64 Query: 142 EPKFINAVLDKV--SRKEEI 159 FIN +LD V + ++E+ Sbjct: 65 SGPFINGILDSVRDAVEKEV 84 >gi|296113998|ref|YP_003627936.1| transcription termination/antitermination protein NusB [Moraxella catarrhalis RH4] gi|295921692|gb|ADG62043.1| transcription termination/antitermination protein NusB [Moraxella catarrhalis RH4] gi|326565100|gb|EGE15293.1| transcription termination/antitermination protein NusB [Moraxella catarrhalis 46P47B1] gi|326567268|gb|EGE17388.1| transcription termination/antitermination protein NusB [Moraxella catarrhalis 12P80B1] gi|326568226|gb|EGE18308.1| transcription termination/antitermination protein NusB [Moraxella catarrhalis BC8] gi|326569926|gb|EGE19973.1| transcription termination/antitermination protein NusB [Moraxella catarrhalis BC1] gi|326573689|gb|EGE23647.1| transcription termination/antitermination protein NusB [Moraxella catarrhalis O35E] Length = 175 Score = 112 bits (282), Expect = 1e-23, Method: Composition-based stats. Identities = 38/144 (26%), Positives = 67/144 (46%), Gaps = 8/144 (5%) Query: 17 GIARLAAVQALYQIDIIGCSTT----EIISEYETYRFCADTELDVESVYLHVDLEWFRVI 72 AR AVQ LY+ + +++ E + A T D + V L ++ + Sbjct: 26 RKARRFAVQGLYEWLMTDYRFAKQRRDLLGGNEPHTIAARTRAD--NAMHTVHLGYYHEL 83 Query: 73 IHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVC 132 + + + ++ LI S L + S+LD+I +IL G EL +P +V++ E + Sbjct: 84 MRNIPAQIDELESLIVSQLDRE--LSKLDIIEHAILLIGTYELKHSLHIPYKVVLDEAMK 141 Query: 133 IAHDFFYGDEPKFINAVLDKVSRK 156 + F D K INAV+DK+++ Sbjct: 142 LNVHFGATDAHKLINAVMDKIAKN 165 >gi|256028476|ref|ZP_05442310.1| transcription antitermination protein NusB [Fusobacterium sp. D11] gi|289766397|ref|ZP_06525775.1| transcription antitermination protein NusB [Fusobacterium sp. D11] gi|289717952|gb|EFD81964.1| transcription antitermination protein NusB [Fusobacterium sp. D11] Length = 157 Score = 112 bits (282), Expect = 1e-23, Method: Composition-based stats. Identities = 36/165 (21%), Positives = 79/165 (47%), Gaps = 8/165 (4%) Query: 1 MTIQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESV 60 M+ +++ K +AR + ++ ++ G S+ E+ ++ Y + + + Sbjct: 1 MSKNFEEQEKKAKGGIRLAREEVFKLVFGAELTGSSSDELKQDFNIYL---QNDEEFINA 57 Query: 61 YLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHS 120 LE+ + I+G+++ +I +I T+ W++ R+ +I S+L G E + + Sbjct: 58 LSEKQLEFIKNSINGIVENYDNIKDIIKKN-TQNWTYERIGVIERSLLIVGTYEFL-IKN 115 Query: 121 VPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRSGCV 165 P+EVI +E V +A ++ +FIN +L + E+ K G + Sbjct: 116 TPIEVIANEIVELAKEYGNEKSYEFINGILANI---EKAKNKGTI 157 >gi|332975638|gb|EGK12527.1| NusB antitermination factor [Psychrobacter sp. 1501(2011)] Length = 244 Score = 112 bits (281), Expect = 2e-23, Method: Composition-based stats. Identities = 30/145 (20%), Positives = 61/145 (42%), Gaps = 4/145 (2%) Query: 17 GIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADT--ELDVESVYLHVDLEWFRVIIH 74 AR A+Q LY+ + + D + V L ++ ++ Sbjct: 30 RKARRFALQGLYEWLMTDHRFEQTGKGEWKANPPHDIAARTRASNAMHTVHLGYYHTLMR 89 Query: 75 GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134 + ++ ++ LI+ L + ++DM+ ++L G EL +P +V++ E + + Sbjct: 90 EIPEQIDELEALIAEHLDRQ--IDQIDMVEHAVLLIGAYELKHSLHIPYKVVLDEAMKLN 147 Query: 135 HDFFYGDEPKFINAVLDKVSRKEEI 159 F D K INAV+DK++ + Sbjct: 148 THFGATDAHKLINAVMDKLAAQLRA 172 >gi|118474879|ref|YP_892479.1| transcription antitermination protein NusB [Campylobacter fetus subsp. fetus 82-40] gi|166215675|sp|A0RQJ6|NUSB_CAMFF RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|118414105|gb|ABK82525.1| transcription antitermination factor NusB [Campylobacter fetus subsp. fetus 82-40] Length = 131 Score = 112 bits (281), Expect = 2e-23, Method: Composition-based stats. Identities = 30/140 (21%), Positives = 60/140 (42%), Gaps = 14/140 (10%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 R R + V LY ++ G E +E+ + + + + + +G Sbjct: 4 RHQVRQSVVSLLYANEM-GSEMEEFSNEFLEEKKIRNDQ-----------KSFTLTLYNG 51 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135 V+D ID + + L + W + + +ILR G E+ + ++I+E + +A+ Sbjct: 52 VLDNLNLIDEALDAHLGK-WKLGEIGAVERAILRLGAYEIKFT-NTQSAIVINEAILLAN 109 Query: 136 DFFYGDEPKFINAVLDKVSR 155 + +FIN VLD +S+ Sbjct: 110 ELGSDSSTRFINGVLDAISK 129 >gi|317495194|ref|ZP_07953564.1| transcription antitermination factor NusB [Gemella moribillum M424] gi|316914616|gb|EFV36092.1| transcription antitermination factor NusB [Gemella moribillum M424] Length = 131 Score = 112 bits (281), Expect = 2e-23, Method: Composition-based stats. Identities = 32/140 (22%), Positives = 56/140 (40%), Gaps = 18/140 (12%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 R R A + L+QI+ EL + + + Sbjct: 4 RHELREAVFKILFQIE---------------NTELDYKELLELEQEEIANSSYVNNTLTE 48 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135 ++D+ + ID +IS+ L + W RL + ILR E++ +P +V I+E V ++ Sbjct: 49 IIDKLEEIDNIISNNL-KDWKLERLSKMDRQILRISAYEILHS-DIPYKVSINEAVELSK 106 Query: 136 DFFY-GDEPKFINAVLDKVS 154 + + KFIN VL + Sbjct: 107 KYSEKDESYKFINGVLKGIV 126 >gi|319950547|ref|ZP_08024457.1| transcription antitermination protein NusB [Dietzia cinnamea P4] gi|319435797|gb|EFV91007.1| transcription antitermination protein NusB [Dietzia cinnamea P4] Length = 189 Score = 112 bits (281), Expect = 2e-23, Method: Composition-based stats. Identities = 33/132 (25%), Positives = 57/132 (43%), Gaps = 10/132 (7%) Query: 24 VQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHI 83 V L++ ++ ++ E + ES H + I+ GV +R + Sbjct: 21 VSLLFEAELRDADVVQLAEERRR--------MGEESQEFHDVAPYTMEIVTGVAERLDRL 72 Query: 84 DLLISSCLTEKWSFSRLDMILCSILRAGVLELIE-CHSVPVEVIISEYVCIAHDFFYGDE 142 D IS L +W+ RL + ++LRA EL+ V V+I + V + D Sbjct: 73 DSTISEHL-REWTLERLPAVDRAVLRAAAWELLFGSDEVDAAVVIDQAVLLVSDLSAEKS 131 Query: 143 PKFINAVLDKVS 154 ++NAVLD+V+ Sbjct: 132 VPYVNAVLDRVA 143 >gi|253581940|ref|ZP_04859164.1| N utilization substance protein B [Fusobacterium varium ATCC 27725] gi|251836289|gb|EES64826.1| N utilization substance protein B [Fusobacterium varium ATCC 27725] Length = 132 Score = 112 bits (281), Expect = 2e-23, Method: Composition-based stats. Identities = 31/141 (21%), Positives = 65/141 (46%), Gaps = 11/141 (7%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 R +AR + +++ +I +T +I+ Y E + + + + ++G Sbjct: 3 RRLAREELFKLVFEGEIKEENTKDILESYLNREEILQNENE---------IAFIKKYMNG 53 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135 + + I +I +T WSF R+ + ++L+ V E++ C P E++I+E V +A Sbjct: 54 IAENNDKILKVIEEKIT-GWSFERIGNVEKALLKISVYEIL-CEDTPYEIVINEAVELAK 111 Query: 136 DFFYGDEPKFINAVLDKVSRK 156 + +F+N VL K+ Sbjct: 112 IYGDEKTSEFLNGVLAKIVNN 132 >gi|227505027|ref|ZP_03935076.1| transcription antitermination protein NusB [Corynebacterium striatum ATCC 6940] gi|227198391|gb|EEI78439.1| transcription antitermination protein NusB [Corynebacterium striatum ATCC 6940] Length = 175 Score = 112 bits (281), Expect = 2e-23, Method: Composition-based stats. Identities = 31/142 (21%), Positives = 59/142 (41%), Gaps = 7/142 (4%) Query: 26 ALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDL 85 +Y+ + II + + D + + E+ ++I+ G + ID Sbjct: 25 IMYEAENRDVDPVAIIEDRVSLARDHDNGVAPVA-------EYTQIIVKGAAEELDVIDE 77 Query: 86 LISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKF 145 I L+ W R+ + +I+R V E++ VP + E V +A ++ P + Sbjct: 78 TIERYLSADWELHRIPAVDRAIMRVAVWEILFNEDVPNATALVEGVELASEYSNDQAPPY 137 Query: 146 INAVLDKVSRKEEIKRSGCVSA 167 I+AVLD V + + V+A Sbjct: 138 IHAVLDDVIQAQSADNPMSVAA 159 >gi|255323400|ref|ZP_05364531.1| transcription antitermination factor NusB [Campylobacter showae RM3277] gi|255299437|gb|EET78723.1| transcription antitermination factor NusB [Campylobacter showae RM3277] Length = 131 Score = 112 bits (281), Expect = 2e-23, Method: Composition-based stats. Identities = 34/138 (24%), Positives = 57/138 (41%), Gaps = 14/138 (10%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 R R A V LY ++ CS + E + D + HG Sbjct: 4 RHQVRQAVVSLLYAREMGSCSEEFVEEFLEEKKIRNDQ------------RSLALSLFHG 51 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135 +++ + +D L+++ L E W + + I ++LR G E+ VII+E + + Sbjct: 52 ILEHEDELDALLNARLKE-WKINEIGSIERAVLRLGAYEMKFTP-TDKAVIINEGIELGK 109 Query: 136 DFFYGDEPKFINAVLDKV 153 + PKFIN VLD + Sbjct: 110 ELGGDSAPKFINGVLDAL 127 >gi|199597165|ref|ZP_03210597.1| transcription antitermination protein NusB [Lactobacillus rhamnosus HN001] gi|258508679|ref|YP_003171430.1| transcription antitermination protein NusB [Lactobacillus rhamnosus GG] gi|258539856|ref|YP_003174355.1| transcription antitermination protein NusB [Lactobacillus rhamnosus Lc 705] gi|199591969|gb|EDZ00044.1| transcription antitermination protein NusB [Lactobacillus rhamnosus HN001] gi|257148606|emb|CAR87579.1| N utilization substance protein B homolog [Lactobacillus rhamnosus GG] gi|257151532|emb|CAR90504.1| N utilization substance protein B homolog [Lactobacillus rhamnosus Lc 705] gi|259649985|dbj|BAI42147.1| transcription antitermination protein NusB [Lactobacillus rhamnosus GG] Length = 135 Score = 112 bits (281), Expect = 2e-23, Method: Composition-based stats. Identities = 28/108 (25%), Positives = 50/108 (46%), Gaps = 6/108 (5%) Query: 52 DTELDVESVYLHV---DLE---WFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILC 105 + E D +VY V D E + ++ GV+ + +D ++ L + W+ SRL Sbjct: 21 NPEADKNAVYAEVLPKDTEVPSYLTALVEGVLANQAALDAALTPQLKKGWTLSRLTKPDL 80 Query: 106 SILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKV 153 ILR G+ E+ ++P I+E + +A + KF+N +L Sbjct: 81 IILRLGLYEIRYEEAMPEAAAINEAINLAKRYSDEQSAKFVNGILANF 128 >gi|326559289|gb|EGE09716.1| transcription termination/antitermination protein NusB [Moraxella catarrhalis 7169] gi|326564337|gb|EGE14567.1| transcription termination/antitermination protein NusB [Moraxella catarrhalis 103P14B1] gi|326570003|gb|EGE20049.1| transcription termination/antitermination protein NusB [Moraxella catarrhalis BC7] gi|326572862|gb|EGE22847.1| transcription termination/antitermination protein NusB [Moraxella catarrhalis CO72] gi|326574686|gb|EGE24622.1| transcription termination/antitermination protein NusB [Moraxella catarrhalis 101P30B1] Length = 175 Score = 112 bits (281), Expect = 2e-23, Method: Composition-based stats. Identities = 38/144 (26%), Positives = 67/144 (46%), Gaps = 8/144 (5%) Query: 17 GIARLAAVQALYQIDIIGCSTT----EIISEYETYRFCADTELDVESVYLHVDLEWFRVI 72 AR AVQ LY+ + +++ E + A T D + V L ++ + Sbjct: 26 RKARRFAVQGLYEWLMTDYRFAKQRRDLLGGNEPHTIAARTRAD--NAMHTVHLGYYHEL 83 Query: 73 IHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVC 132 + + + ++ LI S L + S+LD+I +IL G EL +P +V++ E + Sbjct: 84 MRNIPAQIDELESLIVSQLDRE--LSKLDIIEHAILLIGTYELKHSLHIPYKVVLDEAMK 141 Query: 133 IAHDFFYGDEPKFINAVLDKVSRK 156 + F D K INAV+DK+++ Sbjct: 142 LNVHFGATDAHKLINAVMDKIAKN 165 >gi|257468965|ref|ZP_05633059.1| transcription antitermination protein NusB [Fusobacterium ulcerans ATCC 49185] gi|317063213|ref|ZP_07927698.1| N utilization substance protein B [Fusobacterium ulcerans ATCC 49185] gi|313688889|gb|EFS25724.1| N utilization substance protein B [Fusobacterium ulcerans ATCC 49185] Length = 132 Score = 112 bits (281), Expect = 2e-23, Method: Composition-based stats. Identities = 33/139 (23%), Positives = 64/139 (46%), Gaps = 11/139 (7%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 R +AR + +++ +I +T +I+ Y E + + + + ++G Sbjct: 3 RRLAREELFKLVFEGEIKEENTKDILESYLKREEVLQNENE---------ITFIKKYMNG 53 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135 + + I I +T WSF R+ + ++L+ V E++ C P E++I+E V +A Sbjct: 54 IAENNDRILKTIEEKIT-GWSFERIGNVEKALLKISVYEIL-CEDTPHEIVINEAVELAK 111 Query: 136 DFFYGDEPKFINAVLDKVS 154 + +FIN VL KV Sbjct: 112 MYGDEKTSEFINGVLAKVV 130 >gi|237743358|ref|ZP_04573839.1| transcription antitermination protein NusB [Fusobacterium sp. 7_1] gi|229433137|gb|EEO43349.1| transcription antitermination protein NusB [Fusobacterium sp. 7_1] Length = 157 Score = 112 bits (281), Expect = 2e-23, Method: Composition-based stats. Identities = 36/165 (21%), Positives = 79/165 (47%), Gaps = 8/165 (4%) Query: 1 MTIQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESV 60 M+ +++ K +AR + ++ ++ G S+ E+ ++ Y + + + Sbjct: 1 MSKNFEEQEKKAKGGIRLAREEVFKLVFGAELTGSSSDELKQDFSIYL---QNDEEFINA 57 Query: 61 YLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHS 120 LE+ + I+G+++ +I +I T+ W++ R+ +I S+L G E + + Sbjct: 58 LSEKQLEFIKNSINGIVENYDNIKDVIKKN-TQNWTYERIGVIERSLLIVGTYEFL-IKN 115 Query: 121 VPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRSGCV 165 P+EVI +E V +A ++ +FIN +L + E+ K G + Sbjct: 116 TPIEVIANEIVELAKEYGNEKSYEFINGILANI---EKAKNKGTI 157 >gi|291276400|ref|YP_003516172.1| transcription termination protein [Helicobacter mustelae 12198] gi|290963594|emb|CBG39426.1| transcription termination protein [Helicobacter mustelae 12198] Length = 130 Score = 112 bits (280), Expect = 2e-23, Method: Composition-based stats. Identities = 31/140 (22%), Positives = 59/140 (42%), Gaps = 13/140 (9%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 R AR A + LY DI ++ + + + + + + G Sbjct: 4 RSQAREAVIGFLYAYDIGNLEIRKMAVDILEEKKIRNKQQ-----------SFALDLFDG 52 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135 ++ +D I+ L + W F +L + +ILR G E++ C + ++I+E + +A Sbjct: 53 ILKNLDLLDEQITRHL-KDWEFKKLGGMERAILRLGAYEILCCQ-IDKPIVINEAIELAK 110 Query: 136 DFFYGDEPKFINAVLDKVSR 155 + PK IN VLD + + Sbjct: 111 SYGEEMAPKLINGVLDSLKK 130 >gi|290968307|ref|ZP_06559849.1| transcription antitermination factor NusB [Megasphaera genomosp. type_1 str. 28L] gi|290781666|gb|EFD94252.1| transcription antitermination factor NusB [Megasphaera genomosp. type_1 str. 28L] Length = 141 Score = 112 bits (280), Expect = 2e-23, Method: Composition-based stats. Identities = 34/145 (23%), Positives = 60/145 (41%), Gaps = 9/145 (6%) Query: 16 RGIARLAAVQALYQIDI-IGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74 R R A++ LY + E + L E + ++ Sbjct: 3 RHRERQEALEILYSREFHAPDDIQYAEQEIFDHTAAEARALTPER------RAYCMYLVQ 56 Query: 75 GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHS-VPVEVIISEYVCI 133 V RK+ +D +I S L + W RL+ +I+R + E+ VP V+++E V + Sbjct: 57 TVGARKEELDRIIGS-LAKDWDIQRLNYTEKNIMRLALCEMKYPKEPVPTAVVLNEAVLL 115 Query: 134 AHDFFYGDEPKFINAVLDKVSRKEE 158 A ++ + +F+N VL SR +E Sbjct: 116 AKEYCSSEAARFVNGVLGTYSRMKE 140 >gi|284041158|ref|YP_003391088.1| NusB antitermination factor [Spirosoma linguale DSM 74] gi|283820451|gb|ADB42289.1| NusB antitermination factor [Spirosoma linguale DSM 74] Length = 378 Score = 112 bits (280), Expect = 2e-23, Method: Composition-based stats. Identities = 32/135 (23%), Positives = 63/135 (46%), Gaps = 6/135 (4%) Query: 27 LYQIDIIGCSTTEI-----ISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQ 81 L +ID+ +E+ I ++ + +L+ + D + + ++ Sbjct: 227 LSEIDLSWAENSEVVRGLAIRTLKSVQSATGLQLEPLTDDWEEDELFLNTLFEKSIENDA 286 Query: 82 HIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGD 141 + L++ L + W R+ MI IL+ V EL+ ++PV+V I+EY+ +A + Sbjct: 287 DYEQLLADQL-KNWDVERVAMIDKIILKLAVCELLSFPNIPVKVTINEYIELAKAYSTPK 345 Query: 142 EPKFINAVLDKVSRK 156 KF+N +LD +S K Sbjct: 346 SGKFVNGILDNLSEK 360 >gi|227495454|ref|ZP_03925770.1| conserved hypothetical protein [Actinomyces coleocanis DSM 15436] gi|226831001|gb|EEH63384.1| conserved hypothetical protein [Actinomyces coleocanis DSM 15436] Length = 180 Score = 112 bits (280), Expect = 2e-23, Method: Composition-based stats. Identities = 42/149 (28%), Positives = 59/149 (39%), Gaps = 7/149 (4%) Query: 14 HRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVII 73 R AR A+ +++ D G +E E + E+ II Sbjct: 7 SSRTRARKRAIDTIFEADQRGR------AESAAGINLMLEERKEITAAQTPLPEYSIEII 60 Query: 74 HGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCI 133 GV D ID L+ + T +FSRL + +ILR E+I +VP I E V I Sbjct: 61 EGVRDHLIEIDDLLDTH-TTGRTFSRLPAVDRAILRVATWEIIWNETVPDITAIDEAVRI 119 Query: 134 AHDFFYGDEPKFINAVLDKVSRKEEIKRS 162 D P +NA+LD V R + R Sbjct: 120 TRKISTDDSPALVNAILDAVRRDSKNVRD 148 >gi|237736360|ref|ZP_04566841.1| transcription antitermination protein NusB [Fusobacterium mortiferum ATCC 9817] gi|229421402|gb|EEO36449.1| transcription antitermination protein NusB [Fusobacterium mortiferum ATCC 9817] Length = 132 Score = 112 bits (280), Expect = 2e-23, Method: Composition-based stats. Identities = 34/141 (24%), Positives = 69/141 (48%), Gaps = 11/141 (7%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 R +AR + +++ ++ ST E++ Y E + +L + + ++G Sbjct: 3 RRVAREELFKLVFESELKEESTKEVLDNYLK---------RDEVLTNENELAFIKKYMNG 53 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135 + + I I++ +T WSF R+ + ++LR V EL+ C + P E++++E V +A Sbjct: 54 IAENNDRILETINNNIT-GWSFERIGNVEKALLRCSVYELL-CETTPHEIVVNEVVELAK 111 Query: 136 DFFYGDEPKFINAVLDKVSRK 156 + +F+N VL K+ K Sbjct: 112 LYGDEKTSEFVNGVLAKIINK 132 >gi|320334545|ref|YP_004171256.1| NusB antitermination factor [Deinococcus maricopensis DSM 21211] gi|319755834|gb|ADV67591.1| NusB antitermination factor [Deinococcus maricopensis DSM 21211] Length = 169 Score = 112 bits (280), Expect = 2e-23, Method: Composition-based stats. Identities = 36/168 (21%), Positives = 68/168 (40%), Gaps = 6/168 (3%) Query: 1 MTIQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESV 60 MT + K S+ R AR A + L++ + E ++ R D Sbjct: 1 MTRRREKASA-PSNSRRAAREFAFRVLFESERGQVPLQEALN---RARLNMAHGDDTYPE 56 Query: 61 YLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHS 120 +++ R ++ R+ +D L++ + W+F ++ ++LR E++ Sbjct: 57 LGDEAVDFARDLLGAQTARRAEVDSLLTRTI-RGWTFEQMAQTDLNVLRLATAEMLRGED 115 Query: 121 VPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRSGCVSAI 168 P II +V +A F D +F+N VL VSR E + + + Sbjct: 116 -PHPPIIESFVRVARKFGGEDSGRFVNGVLSGVSRTIEEQGALPLPGP 162 >gi|291558612|emb|CBL37412.1| transcription antitermination factor NusB [butyrate-producing bacterium SSC/2] Length = 137 Score = 112 bits (280), Expect = 2e-23, Method: Composition-based stats. Identities = 32/146 (21%), Positives = 55/146 (37%), Gaps = 10/146 (6%) Query: 15 RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74 +R R + L+ ++ E E + E + + Sbjct: 2 KRSEVREHIFRILFCVEFCEKEEFEDQVELYFHGHENINEKTQKEITEKT---------E 52 Query: 75 GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134 +++ ID IS+ T W+ RL SILR E++ VP +V I+E V +A Sbjct: 53 NLIEHLDEIDEQISAH-TNAWNLERLGKAELSILRLATYEILLDEQVPRKVAINEAVELA 111 Query: 135 HDFFYGDEPKFINAVLDKVSRKEEIK 160 + FIN VL K+ + + + Sbjct: 112 KKYCNEKAAPFINGVLSKIGQDMDEE 137 >gi|288817964|ref|YP_003432311.1| transcription antitermination factor [Hydrogenobacter thermophilus TK-6] gi|288787363|dbj|BAI69110.1| transcription antitermination factor [Hydrogenobacter thermophilus TK-6] gi|308751562|gb|ADO45045.1| NusB antitermination factor [Hydrogenobacter thermophilus TK-6] Length = 134 Score = 112 bits (280), Expect = 2e-23, Method: Composition-based stats. Identities = 36/141 (25%), Positives = 61/141 (43%), Gaps = 11/141 (7%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 + AR A LYQ DI +I EY +E + R ++ Sbjct: 4 KQKARKDAFLILYQWDIKADKLEDITEEYIKSNLIKHSERR----------RYIRKLVRT 53 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135 M + ID LIS L+++W R+ I +ILR + E++ ++ +I +YV + Sbjct: 54 YMQKASEIDSLISE-LSQEWDIDRMGYIERNILRVALAEILFVGVKKLKPVIMDYVKLTL 112 Query: 136 DFFYGDEPKFINAVLDKVSRK 156 + + KF+N VL + + K Sbjct: 113 KYAGKEPAKFVNGVLGRAAPK 133 >gi|238917018|ref|YP_002930535.1| N utilization substance protein B [Eubacterium eligens ATCC 27750] gi|238872378|gb|ACR72088.1| N utilization substance protein B [Eubacterium eligens ATCC 27750] Length = 135 Score = 112 bits (280), Expect = 2e-23, Method: Composition-based stats. Identities = 31/138 (22%), Positives = 59/138 (42%), Gaps = 5/138 (3%) Query: 20 RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79 R + L++ I + E + + AD ++ S + + + + + Sbjct: 2 REHIFKLLFRAPFIDN---KDEYEEQINLYFADADMVDASHLKEEEYNYIKDKTLAIAEL 58 Query: 80 KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139 +D I S ++E W SRL SI+R V E++ +P V ++E V +A + Sbjct: 59 IPELDEKIDS-VSEGWPTSRLGKTELSIMRLAVYEMLYDEDIPTNVALNEAVELAKKYGS 117 Query: 140 GDE-PKFINAVLDKVSRK 156 D F+N VL K+ ++ Sbjct: 118 ADSTAAFVNGVLGKLIKE 135 >gi|313894565|ref|ZP_07828129.1| transcription antitermination factor NusB [Veillonella sp. oral taxon 158 str. F0412] gi|313440961|gb|EFR59389.1| transcription antitermination factor NusB [Veillonella sp. oral taxon 158 str. F0412] Length = 134 Score = 111 bits (279), Expect = 3e-23, Method: Composition-based stats. Identities = 32/147 (21%), Positives = 56/147 (38%), Gaps = 16/147 (10%) Query: 10 LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF 69 + R AR A Q LY + + D + + +D + Sbjct: 1 MVTKRNRREARQYAFQMLYANEF--------------HNDQNDVQFPEGHIQKAMDKAYA 46 Query: 70 RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIEC-HSVPVEVIIS 128 II GV+ + ID + + + LD + +ILR V E+ + + I+ Sbjct: 47 NSIIQGVIATAEKIDADLQPF-CKSRKVANLDKVDRAILRIAVWEMTNEVEPLEPSIAIN 105 Query: 129 EYVCIAHDFFYGDEPKFINAVLDKVSR 155 E + +A +F K INA+LD ++ Sbjct: 106 EAIQLAKEFGSDASYKLINAILDAYNK 132 >gi|326773300|ref|ZP_08232583.1| transcription antitermination factor NusB [Actinomyces viscosus C505] gi|326636530|gb|EGE37433.1| transcription antitermination factor NusB [Actinomyces viscosus C505] Length = 163 Score = 111 bits (279), Expect = 3e-23, Method: Composition-based stats. Identities = 26/138 (18%), Positives = 57/138 (41%), Gaps = 5/138 (3%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 R AR A++ L++ D G ++E E ++ V S + I+ G Sbjct: 23 RTKARRRAIEILFEADQRGMLSSEGSEELRSFAQLR----AVSSANHTEAPAYTGEILDG 78 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135 + D +D I + + W+ R+ + +I R E++ V V + E + ++ Sbjct: 79 LCDHLGDVDETIQTY-AQGWTLGRMPAVDRAIARVATWEIVYNDEVDAPVAVDEAMTLSR 137 Query: 136 DFFYGDEPKFINAVLDKV 153 + P+++ +L ++ Sbjct: 138 MLSTDESPRYLGGLLGRI 155 >gi|93007217|ref|YP_581654.1| NusB antitermination factor [Psychrobacter cryohalolentis K5] gi|119390802|sp|Q1Q833|NUSB_PSYCK RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|92394895|gb|ABE76170.1| NusB antitermination factor [Psychrobacter cryohalolentis K5] Length = 315 Score = 111 bits (279), Expect = 3e-23, Method: Composition-based stats. Identities = 31/147 (21%), Positives = 61/147 (41%), Gaps = 4/147 (2%) Query: 17 GIARLAAVQALYQIDIIGC--STTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74 AR A+Q LY+ + + + V + ++ ++ Sbjct: 14 RKARRFAMQGLYEWLVTDRRFDIDGKLGWKANAPHDIAARTRATNAMHTVHIGYYHEMMR 73 Query: 75 GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134 + ++ +D LIS L + ++LD + +IL G EL +P +V++ E + + Sbjct: 74 DIPEQIDALDALISQHLDRE--INKLDTVEHAILLVGAYELQNRLEIPYKVVLDEAMKLN 131 Query: 135 HDFFYGDEPKFINAVLDKVSRKEEIKR 161 + F D K INAVLD+++ + Sbjct: 132 NHFGATDAHKLINAVLDRMAVELRAPE 158 >gi|256425201|ref|YP_003125854.1| NusB antitermination factor [Chitinophaga pinensis DSM 2588] gi|256040109|gb|ACU63653.1| NusB antitermination factor [Chitinophaga pinensis DSM 2588] Length = 309 Score = 111 bits (279), Expect = 3e-23, Method: Composition-based stats. Identities = 24/93 (25%), Positives = 50/93 (53%), Gaps = 1/93 (1%) Query: 66 LEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEV 125 LE+ R ++ V+D+K++ LI L + W R+ + ++ GV E + ++P +V Sbjct: 205 LEYARELLLTVLDKKEYCLELIKPKL-QNWDPERIAAVDMLLMEMGVCEFLYFPTIPTKV 263 Query: 126 IISEYVCIAHDFFYGDEPKFINAVLDKVSRKEE 158 I+EY+ +A + +F+N +LD + + + Sbjct: 264 TINEYIDLAKAYSTPQSGQFVNGILDNILKDLD 296 >gi|75764701|ref|ZP_00744117.1| N utilization substance protein B [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|74487809|gb|EAO51609.1| N utilization substance protein B [Bacillus thuringiensis serovar israelensis ATCC 35646] Length = 107 Score = 111 bits (278), Expect = 3e-23, Method: Composition-based stats. Identities = 33/115 (28%), Positives = 51/115 (44%), Gaps = 14/115 (12%) Query: 15 RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74 +R AR A+QALYQ+DI G ++ E E + ++ Sbjct: 2 KRRTARERAMQALYQMDITGELEPKVAVENTLDEGEETNE-------------FLESLVV 48 Query: 75 GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISE 129 G ++ K+ ID I L +KW R+ ++ SILR V E+ +P V I+E Sbjct: 49 GFVENKEAIDEAIRQNL-KKWKLERISIVDRSILRVAVYEMKYMEEIPHNVTINE 102 >gi|291520794|emb|CBK79087.1| transcription antitermination factor NusB [Coprococcus catus GD/7] Length = 131 Score = 111 bits (278), Expect = 4e-23, Method: Composition-based stats. Identities = 29/138 (21%), Positives = 57/138 (41%), Gaps = 10/138 (7%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 R R + L++ D E + E E + + + + +++ Sbjct: 3 RRELREHIFRLLFRRDF---FPEEEMKEQEAFYIEYLADPEQKE------VDYIVQKTEK 53 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135 +M +D +++ + W R+ + +I+R V E+ +PV V I+E V +A Sbjct: 54 IMAMIPELDTMVNEH-SVGWQTERMGKVDLTIIRLAVYEMKYDDDIPVSVAINEAVELAK 112 Query: 136 DFFYGDEPKFINAVLDKV 153 + + P FIN VL K+ Sbjct: 113 RYGSENSPAFINGVLAKM 130 >gi|88607519|ref|YP_505131.1| N utilization substance protein B [Anaplasma phagocytophilum HZ] gi|88598582|gb|ABD44052.1| N utilization substance protein B [Anaplasma phagocytophilum HZ] Length = 282 Score = 110 bits (277), Expect = 5e-23, Method: Composition-based stats. Identities = 44/144 (30%), Positives = 71/144 (49%), Gaps = 6/144 (4%) Query: 9 DLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEW 68 D+ + AR AVQ Y + + G T + + + E+ VD + Sbjct: 12 DMPWHVGKTSARFLAVQGAYAM-MFGAYTASDLEDLLEHL----CEMQEVLDLHRVDKKL 66 Query: 69 FRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIIS 128 I+ ++++ +D LIS L EKWS R++++ +++RAGV EL+ C VII+ Sbjct: 67 LSKILGCMIEKCNEVDSLISVHLNEKWSMERINLVSLAVMRAGVCELL-CLKTSECVIIN 125 Query: 129 EYVCIAHDFFYGDEPKFINAVLDK 152 EYV IA E F+NA+L+K Sbjct: 126 EYVGIASTVLEKSEVNFVNAILNK 149 >gi|223041028|ref|ZP_03611286.1| transcription antitermination factor NusB [Campylobacter rectus RM3267] gi|222877700|gb|EEF12823.1| transcription antitermination factor NusB [Campylobacter rectus RM3267] Length = 131 Score = 110 bits (277), Expect = 5e-23, Method: Composition-based stats. Identities = 34/138 (24%), Positives = 56/138 (40%), Gaps = 14/138 (10%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 R R A V LY ++ CS + E + D + HG Sbjct: 4 RHQVRQAVVSLLYAREMGSCSEEFVEEFLEEKKIRNDQ------------RSLALSLFHG 51 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135 +++ +D L+++ L E W + + I ++LR G E+ VII+E + + Sbjct: 52 ILEHADGLDALLNARLKE-WKINEIGSIERAVLRLGAYEMKFTP-TDKAVIINEGIELGK 109 Query: 136 DFFYGDEPKFINAVLDKV 153 + PKFIN VLD + Sbjct: 110 ELGGDSAPKFINGVLDAL 127 >gi|291519195|emb|CBK74416.1| transcription antitermination factor NusB [Butyrivibrio fibrisolvens 16/4] Length = 140 Score = 110 bits (277), Expect = 5e-23, Method: Composition-based stats. Identities = 29/141 (20%), Positives = 61/141 (43%), Gaps = 3/141 (2%) Query: 15 RRGIARLAAVQALYQIDIIG-CSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVII 73 R R +A++ + +I + R A+TE ++ D E+ + Sbjct: 2 NRHEVRKEVFKAVFMNEFHDADDMKSVIDTFLQGRNNAETEDLAKNNKTPEDEEYIKTKS 61 Query: 74 HGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCI 133 ++ + ID +I+ + W +R+ + +++R + E+ ++PV V I+E V + Sbjct: 62 EAIIAKLPEIDEMINKSVD-GWKTTRMAKVDLTLIRLALYEIKF-ENIPVGVAINEAVTL 119 Query: 134 AHDFFYGDEPKFINAVLDKVS 154 A +F F+N L K+ Sbjct: 120 ADEFGTDSSAGFVNGALAKLV 140 >gi|46199062|ref|YP_004729.1| N utilization substance protein B-like protein [Thermus thermophilus HB27] gi|55981090|ref|YP_144387.1| N-utilization substance protein B [Thermus thermophilus HB8] gi|81567694|sp|Q72JL6|NUSB_THET2 RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|81600431|sp|Q5SJ93|NUSB_THET8 RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|46196686|gb|AAS81102.1| N utilization substance protein B-like protein [Thermus thermophilus HB27] gi|55772503|dbj|BAD70944.1| N-utilization substance protein B [Thermus thermophilus HB8] Length = 151 Score = 110 bits (277), Expect = 6e-23, Method: Composition-based stats. Identities = 32/155 (20%), Positives = 61/155 (39%), Gaps = 7/155 (4%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 R AR A++AL+ + G E E + + R ++ G Sbjct: 2 RRRARELAMRALFAHTVGGMGLEEAFQ--HALEEMGGEEEGYAEPLDQEGVAFARRLLSG 59 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135 ++ +D ++ E W F ++ ++LR V E++ P E +I V IA+ Sbjct: 60 YKAHQEEVDRVLEET-VEGWDFRQMAKTDLAVLRLAVYEMLYEP-TPFEPLIEVAVKIAN 117 Query: 136 DFFYGDEPKFINAVLDKVSRKEEIKRSGCVSAITQ 170 + F+N VL +V R+ +G + + + Sbjct: 118 RYGGEHSGSFVNGVLARVYRRV---AAGELKTVAK 149 >gi|329121106|ref|ZP_08249737.1| transcription antitermination factor NusB [Dialister micraerophilus DSM 19965] gi|327471268|gb|EGF16722.1| transcription antitermination factor NusB [Dialister micraerophilus DSM 19965] Length = 136 Score = 110 bits (276), Expect = 6e-23, Method: Composition-based stats. Identities = 32/142 (22%), Positives = 64/142 (45%), Gaps = 17/142 (11%) Query: 15 RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74 +R +R A++ LY ++ + ++ ++ +I+ Sbjct: 5 KRRYSREYALEVLYANELNPQT--------------EKINSEIYKKLSDSGKQFAESLIN 50 Query: 75 GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVP--VEVIISEYVC 132 V + + IDLLI + +KWS ++L+++ +ILR + E++ VI +E + Sbjct: 51 SVRENNEEIDLLIKKHI-KKWSINQLNVVDKNILRIAIAEMLFLKDEKQEKNVIFNEAIE 109 Query: 133 IAHDFFYGDEPKFINAVLDKVS 154 IA + + KFIN +L+ VS Sbjct: 110 IAKIYGGKNSFKFINGILESVS 131 >gi|291166741|gb|EFE28787.1| transcription antitermination factor NusB [Filifactor alocis ATCC 35896] Length = 142 Score = 110 bits (276), Expect = 6e-23, Method: Composition-based stats. Identities = 32/155 (20%), Positives = 66/155 (42%), Gaps = 18/155 (11%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 R R A + LY++ I E + Y + + + ++ Sbjct: 3 RKTEREKAFKLLYEMGIKKEEEIEFLQPYLMREGLMEG--------------YVKDVLTL 48 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135 + I I +++W SR+ + +IL+ V E++ +PV V I+E V ++ Sbjct: 49 YFSHRDDIMDKIQKS-SKRWDVSRMIKLDLTILKLAVTEMMYYDDIPVAVAINEAVSLSK 107 Query: 136 DFFYGDEPKFINAVLDKVS---RKEEIKRSGCVSA 167 + D KFIN +L +++ ++E+++ S +A Sbjct: 108 KYSGEDSYKFINGILKQITIDQKEEKVELSNDSNA 142 >gi|313891837|ref|ZP_07825442.1| transcription antitermination factor NusB [Dialister microaerophilus UPII 345-E] gi|313119831|gb|EFR43018.1| transcription antitermination factor NusB [Dialister microaerophilus UPII 345-E] Length = 133 Score = 110 bits (276), Expect = 7e-23, Method: Composition-based stats. Identities = 32/142 (22%), Positives = 64/142 (45%), Gaps = 17/142 (11%) Query: 15 RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74 +R +R A++ LY ++ + ++ ++ +I+ Sbjct: 2 KRRYSREYALEVLYANELNPQT--------------EKINSEIYKKLSDSGKQFAESLIN 47 Query: 75 GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVP--VEVIISEYVC 132 V + + IDLLI + +KWS ++L+++ +ILR + E++ VI +E + Sbjct: 48 SVRENNEEIDLLIKKHI-KKWSINQLNVVDKNILRIAIAEMLFLKDEKQEKNVIFNEAIE 106 Query: 133 IAHDFFYGDEPKFINAVLDKVS 154 IA + + KFIN +L+ VS Sbjct: 107 IAKIYGGKNSFKFINGILESVS 128 >gi|153952373|ref|YP_001398575.1| transcription antitermination protein NusB [Campylobacter jejuni subsp. doylei 269.97] gi|166215677|sp|A7H4Z5|NUSB_CAMJD RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|152939819|gb|ABS44560.1| transcription antitermination factor NusB [Campylobacter jejuni subsp. doylei 269.97] Length = 132 Score = 110 bits (275), Expect = 8e-23, Method: Composition-based stats. Identities = 32/146 (21%), Positives = 65/146 (44%), Gaps = 20/146 (13%) Query: 16 RGIARLAAVQALYQIDIIGCS---TTEIISEYETYRFCADTELDVESVYLHVDLEWFRVI 72 R R + + LY ++ + EI+ E + + + + Sbjct: 4 RHQVRQSVISLLYAFELNSQNNVFVDEILDEKKIRNEQKN---------------FTLNL 48 Query: 73 IHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVC 132 HG++D +ID ++S L + + L + +ILR G EL+ + P ++I+E + Sbjct: 49 YHGILDNLNNIDETLNSFLNDN-QITALGHVERAILRLGAYELLFT-NTPSAIVINEAIE 106 Query: 133 IAHDFFYGDEPKFINAVLDKVSRKEE 158 +A + + PKF+N VLD + + ++ Sbjct: 107 LAKELANDNSPKFMNGVLDALIKAKK 132 >gi|332294978|ref|YP_004436901.1| NusB antitermination factor [Thermodesulfobium narugense DSM 14796] gi|332178081|gb|AEE13770.1| NusB antitermination factor [Thermodesulfobium narugense DSM 14796] Length = 134 Score = 110 bits (275), Expect = 8e-23, Method: Composition-based stats. Identities = 36/145 (24%), Positives = 63/145 (43%), Gaps = 16/145 (11%) Query: 10 LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF 69 +K S R R ++ LY+++I ST ++ + + D E+ Sbjct: 1 MKKSLR--YLREMVLKILYELEINSQSTINVLMQRYAEHIQPE------------DFEFI 46 Query: 70 RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISE 129 RV G+++ K ID L+ L+ W R+ + I+ V E+ P + I+E Sbjct: 47 RVRAEGIIENKDAIDKLLDE-LSIDWPTERMVVTDRLIMEIAVFEMNYLKLSP-SIAINE 104 Query: 130 YVCIAHDFFYGDEPKFINAVLDKVS 154 V ++ + KF+NAVL KV+ Sbjct: 105 AVELSKLYGTEKSYKFVNAVLSKVA 129 >gi|315637897|ref|ZP_07893084.1| transcription antitermination factor NusB [Campylobacter upsaliensis JV21] gi|315482009|gb|EFU72626.1| transcription antitermination factor NusB [Campylobacter upsaliensis JV21] Length = 132 Score = 109 bits (274), Expect = 1e-22, Method: Composition-based stats. Identities = 35/145 (24%), Positives = 64/145 (44%), Gaps = 14/145 (9%) Query: 14 HRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVII 73 R AR + + LY +++ G + I TE E + + + Sbjct: 2 ASRHQARQSVISLLYALELNGKNDNFI------------TEFLQEKKIRNEAKNFTLSLY 49 Query: 74 HGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCI 133 +GV++ Q +D I L E ++ I +ILR G EL+ ++ ++I+E V + Sbjct: 50 NGVLEHLQSLDERIDVFLNEN-KIHQIGHIERAILRLGAFELLHTDTL-AAIVINEAVEL 107 Query: 134 AHDFFYGDEPKFINAVLDKVSRKEE 158 A + + PK IN VLD + + ++ Sbjct: 108 AKEMANENAPKLINGVLDGLQKAKK 132 >gi|298346844|ref|YP_003719531.1| putative transcription antitermination protein NusB [Mobiluncus curtisii ATCC 43063] gi|298236905|gb|ADI68037.1| possible transcription antitermination protein NusB [Mobiluncus curtisii ATCC 43063] Length = 174 Score = 109 bits (274), Expect = 1e-22, Method: Composition-based stats. Identities = 29/128 (22%), Positives = 53/128 (41%), Gaps = 8/128 (6%) Query: 26 ALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDL 85 LY+ + G T E I R E+ + I+ GV + + ID Sbjct: 1 MLYEAHVRGWDTPEGIFSLSQLR-------QDETTAQTPLPAYAVEILEGVAEHLERIDA 53 Query: 86 LISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKF 145 +++ ++ W R+ + +I+R E++ V V I+ + IA + + PKF Sbjct: 54 ALATY-SKAWPLHRMPEVDLAIMRVAAWEILFNPDVTGPVAITAAMQIAEERSTDESPKF 112 Query: 146 INAVLDKV 153 IN +L + Sbjct: 113 INGLLGAI 120 >gi|163785218|ref|ZP_02179895.1| transcription antitermination protein NusB [Hydrogenivirga sp. 128-5-R1-1] gi|159879514|gb|EDP73341.1| transcription antitermination protein NusB [Hydrogenivirga sp. 128-5-R1-1] Length = 146 Score = 109 bits (274), Expect = 1e-22, Method: Composition-based stats. Identities = 39/147 (26%), Positives = 62/147 (42%), Gaps = 12/147 (8%) Query: 16 RGIARLAAVQALYQIDIIGC-STTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74 R AR A++ LY DI E + E + D+ L++ II+ Sbjct: 6 RKKAREIALKVLYAYDIDKEKDINETLEETIS---------DIRQNLSEKTLKYAYQIIN 56 Query: 75 GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134 GV + ID +I S L + W RL I ++LR G EL+ + + + + IA Sbjct: 57 GVYEYIDEIDNIIQSHL-KDWRLDRLGYIERALLRIGTYELVFSDIPDKKRVFMDILDIA 115 Query: 135 HDF-FYGDEPKFINAVLDKVSRKEEIK 160 + KFIN VL K+ + + + Sbjct: 116 KCYNLDEKALKFINGVLSKIYKDFKAQ 142 >gi|57242527|ref|ZP_00370465.1| transcription antitermination factor NusB [Campylobacter upsaliensis RM3195] gi|57016812|gb|EAL53595.1| transcription antitermination factor NusB [Campylobacter upsaliensis RM3195] Length = 132 Score = 109 bits (274), Expect = 1e-22, Method: Composition-based stats. Identities = 32/145 (22%), Positives = 64/145 (44%), Gaps = 14/145 (9%) Query: 14 HRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVII 73 R AR + + LY +++ G + I+E+ + + + + + Sbjct: 2 ASRHQARQSVISLLYALELNGKN-DNFITEFLQEKKIRNEAKN-----------FTLSLY 49 Query: 74 HGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCI 133 +GV++ Q +D I L E ++ I +ILR G EL+ ++ ++I+E V + Sbjct: 50 NGVLEHLQSLDECIDVFLNEN-KIHQIGHIERAILRLGAFELLHTDTL-AAIVINEAVEL 107 Query: 134 AHDFFYGDEPKFINAVLDKVSRKEE 158 + + PK IN VLD + + + Sbjct: 108 TKEMANENAPKLINGVLDGLQKAGK 132 >gi|311748704|ref|ZP_07722489.1| antitermination factor [Algoriphagus sp. PR1] gi|126577236|gb|EAZ81484.1| antitermination factor [Algoriphagus sp. PR1] Length = 394 Score = 109 bits (274), Expect = 1e-22, Method: Composition-based stats. Identities = 37/167 (22%), Positives = 70/167 (41%), Gaps = 17/167 (10%) Query: 1 MTIQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESV 60 M ++KDL + + + R A ++I+ L ++ Sbjct: 236 MLNYFSEKDLNWTENKSVVRSLA--------------SKILKNAAQVDGSETNPLPEIAM 281 Query: 61 YLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHS 120 D E+F+ I + ++ + LIS T+ W RL I+ + E+ S Sbjct: 282 NWEEDKEFFQNIFNFTLENEAESKALISQK-TKNWDIDRLAFTDKIIISMALAEMKNFPS 340 Query: 121 VPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRSGCVSA 167 +PV+V I+EY+ I+ + +F+N +LD +S+ E+ SG + Sbjct: 341 IPVKVSINEYIDISKTYSTPKSKQFVNGLLDVMSK--ELTESGQIRK 385 >gi|320450059|ref|YP_004202155.1| transcription antitermination factor NusB [Thermus scotoductus SA-01] gi|320150228|gb|ADW21606.1| transcription antitermination factor NusB [Thermus scotoductus SA-01] Length = 151 Score = 109 bits (274), Expect = 1e-22, Method: Composition-based stats. Identities = 29/154 (18%), Positives = 58/154 (37%), Gaps = 7/154 (4%) Query: 17 GIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGV 76 AR A++AL+ G E E + + R ++ G Sbjct: 3 RRARELAMRALFAHTQGGVDLEEAFR--HALEEMGGEEDSYGDSLDQEGVAFARRLLEGY 60 Query: 77 MDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHD 136 + +D ++ E W F+++ ++LR E++ P +I V IA+ Sbjct: 61 KAHAEEVDQVLRDT-VEGWDFAQMSKTDLTVLRLAAYEMLYEP-TPFAPLIEVAVKIANR 118 Query: 137 FFYGDEPKFINAVLDKVSRKEEIKRSGCVSAITQ 170 + F+N VL ++ R+ + G + A+ + Sbjct: 119 YGGEHSGAFVNGVLGRLYRRIQ---GGELKAVPK 149 >gi|257460184|ref|ZP_05625288.1| transcription antitermination factor NusB [Campylobacter gracilis RM3268] gi|257442625|gb|EEV17764.1| transcription antitermination factor NusB [Campylobacter gracilis RM3268] Length = 342 Score = 109 bits (273), Expect = 1e-22, Method: Composition-based stats. Identities = 35/138 (25%), Positives = 58/138 (42%), Gaps = 16/138 (11%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 R ARLAA+ LY D+ G + EY + + + + W ++ G Sbjct: 4 RHQARLAAISLLYSRDMNGGG-EDFADEYLEEKRIRNEQRN-----------WTLALLRG 51 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135 + +D LI L E + + + + +ILR G EL ++I+E + A Sbjct: 52 ASENLAAVDALIDENLKE-FKLAEISALERAILRLGAYELRFT-DTDAGIVINEAINSAK 109 Query: 136 DFFYGDEPKFINAVLDKV 153 + P+FIN VLD + Sbjct: 110 ELGI--SPRFINGVLDAL 125 >gi|227873694|ref|ZP_03991927.1| conserved hypothetical protein [Oribacterium sinus F0268] gi|227840462|gb|EEJ50859.1| conserved hypothetical protein [Oribacterium sinus F0268] Length = 185 Score = 109 bits (273), Expect = 1e-22, Method: Composition-based stats. Identities = 30/149 (20%), Positives = 61/149 (40%), Gaps = 9/149 (6%) Query: 15 RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELD------VESVYLHVDLEW 68 + R + L+ + + Y + + + D E + + Sbjct: 2 NKREERDHKFKLLFSTLFYPEEGKQ--EQLSHYSYSKEEDEDFLLPEKEEEHLSEEEEAF 59 Query: 69 FRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIIS 128 + +++R H+D I+ +TE W+ SR+ ++LR + EL P +V+ + Sbjct: 60 LSQEVMKILERLPHLDERIN-AVTEGWTTSRMSKTDLTVLRLALYELEYQEETPDKVVFN 118 Query: 129 EYVCIAHDFFYGDEPKFINAVLDKVSRKE 157 E V IA + D F+N VL +++ K+ Sbjct: 119 EAVEIAKKYGGADSGSFVNGVLARITGKQ 147 >gi|157163972|ref|YP_001466235.1| transcription antitermination protein NusB [Campylobacter concisus 13826] gi|166215673|sp|A7ZBS7|NUSB_CAMC1 RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|112801548|gb|EAT98892.1| transcription antitermination factor NusB [Campylobacter concisus 13826] Length = 131 Score = 109 bits (273), Expect = 1e-22, Method: Composition-based stats. Identities = 34/138 (24%), Positives = 56/138 (40%), Gaps = 14/138 (10%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 R R A V LY +I + E E+ + + + Sbjct: 4 RHQVRQAIVSLLYSNEINPVTA-EFEDEFLEEKKIRNERKNEAQQTFKE----------- 51 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135 V+ K+ +D ++ L + FS++ +ILR G+ E+ VII+E + +A Sbjct: 52 VLANKEKLDEILKPHLKDG-DFSKVGATELAILRLGLYEMKFSQ-TDKAVIINEAIELAK 109 Query: 136 DFFYGDEPKFINAVLDKV 153 + PKFIN VLDK+ Sbjct: 110 ELGSDQAPKFINGVLDKI 127 >gi|239632001|ref|ZP_04675032.1| NusB antitermination factor [Lactobacillus paracasei subsp. paracasei 8700:2] gi|239526466|gb|EEQ65467.1| NusB antitermination factor [Lactobacillus paracasei subsp. paracasei 8700:2] Length = 139 Score = 109 bits (273), Expect = 1e-22, Method: Composition-based stats. Identities = 24/108 (22%), Positives = 49/108 (45%), Gaps = 6/108 (5%) Query: 52 DTELDVESVYLHV------DLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILC 105 + E D ++VY V + ++ V+ ++ +D ++ L + W+ +RL Sbjct: 25 NPEADKDAVYAEVLPQDTEVPAYLTTLVEAVLSKQADLDAALTPQLKKGWTLNRLTKPDL 84 Query: 106 SILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKV 153 ILR G+ E+ ++P I+E + +A + KF+N +L Sbjct: 85 IILRLGLYEIRYEEAMPEAAAINEAINLAKRYSDDQSAKFVNGILANF 132 >gi|42519423|ref|NP_965353.1| hypothetical protein LJ1551 [Lactobacillus johnsonii NCC 533] gi|227890288|ref|ZP_04008093.1| transcription antitermination protein NusB [Lactobacillus johnsonii ATCC 33200] gi|268319198|ref|YP_003292854.1| transcription antitermination factor NusB [Lactobacillus johnsonii FI9785] gi|41583711|gb|AAS09319.1| hypothetical protein LJ_1551 [Lactobacillus johnsonii NCC 533] gi|227849102|gb|EEJ59188.1| transcription antitermination protein NusB [Lactobacillus johnsonii ATCC 33200] gi|262397573|emb|CAX66587.1| transcription antitermination factor NusB [Lactobacillus johnsonii FI9785] gi|329667052|gb|AEB93000.1| hypothetical protein LJP_0669 [Lactobacillus johnsonii DPC 6026] Length = 133 Score = 109 bits (272), Expect = 2e-22, Method: Composition-based stats. Identities = 28/138 (20%), Positives = 58/138 (42%), Gaps = 11/138 (7%) Query: 20 RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79 R A+QA+Y + E A + L ++ +++GV+ Sbjct: 7 RRIAMQAIY---LANQGKLTDAEEVCQKALKA--------LELKDFPDYSTELVNGVLAN 55 Query: 80 KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139 K+ +D +S L + W +R++ I +IL + E+ + ++E + + +F Sbjct: 56 KEALDEQLSKYLKKGWRLNRINEIDLAILEVALYEMQNSKVIDPVAALNEALNLCDEFSS 115 Query: 140 GDEPKFINAVLDKVSRKE 157 + KFIN +L +K+ Sbjct: 116 KESKKFINGLLANFIKKD 133 >gi|296273814|ref|YP_003656445.1| NusB antitermination factor [Arcobacter nitrofigilis DSM 7299] gi|296097988|gb|ADG93938.1| NusB antitermination factor [Arcobacter nitrofigilis DSM 7299] Length = 132 Score = 109 bits (272), Expect = 2e-22, Method: Composition-based stats. Identities = 30/141 (21%), Positives = 63/141 (44%), Gaps = 13/141 (9%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 R AR + + LY D+ + + E + + + E+ + +G Sbjct: 4 RTQARESVIGLLYAYDLGNEGIVKFVDEILEDKKIRNKQ-----------KEFALNLFNG 52 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135 V++ I+ I+ L + + + + SILR + E++ ++ +II+E + ++ Sbjct: 53 VVNNYALINEHIALHLKQG-TIKDIGSVEKSILRLAIYEILF-ETLDRAIIINEAIELSK 110 Query: 136 DFFYGDEPKFINAVLDKVSRK 156 PKFIN VLDK++++ Sbjct: 111 RLASDGAPKFINGVLDKITKE 131 >gi|319941815|ref|ZP_08016137.1| hypothetical protein HMPREF9464_01356 [Sutterella wadsworthensis 3_1_45B] gi|319804748|gb|EFW01615.1| hypothetical protein HMPREF9464_01356 [Sutterella wadsworthensis 3_1_45B] Length = 173 Score = 109 bits (272), Expect = 2e-22, Method: Composition-based stats. Identities = 38/166 (22%), Positives = 65/166 (39%), Gaps = 12/166 (7%) Query: 1 MTIQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDV--- 57 MT +K + R +AR+ A+ YQ + I E D E Sbjct: 1 MTEA-HKPGRQAHAPRHLARVFALLGFYQWIADPTLKAQKIEENLPALLADDEEGTPVED 59 Query: 58 ----ESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVL 113 + D E ++ G + ++ SS + R+ ++ +IL G Sbjct: 60 LGLTSEDWARCDRELLTTLLSGAIGEHAALEAEFSSFVDR--DLKRVSLVERAILFIGTY 117 Query: 114 ELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEI 159 EL+ C P V+++E + +A F G +F NAVL++V+ K Sbjct: 118 ELLRCPQTPYRVVLNETIELAKHFGSG--YRFTNAVLERVAAKVRA 161 >gi|291459867|ref|ZP_06599257.1| n utilization substance protein B [Oribacterium sp. oral taxon 078 str. F0262] gi|291417657|gb|EFE91376.1| n utilization substance protein B [Oribacterium sp. oral taxon 078 str. F0262] Length = 264 Score = 109 bits (272), Expect = 2e-22, Method: Composition-based stats. Identities = 28/124 (22%), Positives = 53/124 (42%), Gaps = 4/124 (3%) Query: 44 YETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMI 103 + D + ES + + + G++ R + +D I+ E W+ R+ Sbjct: 119 LKAEEEGDDPDPVGESGLRLSEEREIQKEVCGMVGRIEELDRRINEA-AEGWTTKRMSRT 177 Query: 104 LCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRSG 163 ++LR + E++ +P +V I+E V IA + + F+N VL +R KRS Sbjct: 178 DLTVLRLALYEILFRDEIPDKVSINEAVDIAKKYGGAESGSFVNGVL---ARLLNPKRSA 234 Query: 164 CVSA 167 + Sbjct: 235 VTKS 238 >gi|301066686|ref|YP_003788709.1| transcription termination factor [Lactobacillus casei str. Zhang] gi|300439093|gb|ADK18859.1| Transcription termination factor [Lactobacillus casei str. Zhang] Length = 135 Score = 109 bits (272), Expect = 2e-22, Method: Composition-based stats. Identities = 24/108 (22%), Positives = 49/108 (45%), Gaps = 6/108 (5%) Query: 52 DTELDVESVYLHV------DLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILC 105 + E D ++VY V + ++ V+ ++ +D ++ L + W+ +RL Sbjct: 21 NPEADKDAVYAEVLPQDTEVPAYLTTLVEAVLSKQADLDAALTPQLKKGWTLNRLTKPDL 80 Query: 106 SILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKV 153 ILR G+ E+ ++P I+E + +A + KF+N +L Sbjct: 81 IILRLGLYEIRYEEAMPEAAAINEAINLAKRYSDDQSAKFVNGILANF 128 >gi|237750245|ref|ZP_04580725.1| predicted protein [Helicobacter bilis ATCC 43879] gi|229374139|gb|EEO24530.1| predicted protein [Helicobacter bilis ATCC 43879] Length = 368 Score = 109 bits (272), Expect = 2e-22, Method: Composition-based stats. Identities = 34/140 (24%), Positives = 66/140 (47%), Gaps = 13/140 (9%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 R AR A +Q LY ++ E + + + + D + ++HG Sbjct: 4 RKQAREAIIQILYAKELGNDKAIEQAEAFLNAQKIRNKQQD-----------FALNLLHG 52 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135 + + ++ I +I+ L + W SRL +I +I++ GV EL++ + VII+E + + Sbjct: 53 ICNEERKIADIINVFL-KSWDLSRLGVIEKNIIKLGVYELLQT-NTQKAVIINEAIELTK 110 Query: 136 DFFYGDEPKFINAVLDKVSR 155 F D + +N +LD V++ Sbjct: 111 SFNVQDAFRLVNGILDSVAK 130 >gi|148654081|ref|YP_001281174.1| NusB antitermination factor [Psychrobacter sp. PRwf-1] gi|148573165|gb|ABQ95224.1| NusB antitermination factor [Psychrobacter sp. PRwf-1] Length = 252 Score = 109 bits (272), Expect = 2e-22, Method: Composition-based stats. Identities = 30/140 (21%), Positives = 61/140 (43%), Gaps = 4/140 (2%) Query: 17 GIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADT--ELDVESVYLHVDLEWFRVIIH 74 AR A+Q LY+ + ++ D + V L ++ ++ Sbjct: 38 RKARRFALQGLYEWLMTDHRFEQMGQGEWKANPPHDIAARTRATNAMHTVHLGYYHTLMR 97 Query: 75 GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134 + ++ ++ LI+ L + ++DM+ ++L G EL +P +V++ E + + Sbjct: 98 EIPEQITDLEALIAQHLDR--AIDKIDMVEHAVLLIGAYELKNSLHIPYKVVLDEAMKLN 155 Query: 135 HDFFYGDEPKFINAVLDKVS 154 F D K INAV+DK++ Sbjct: 156 THFGATDAHKLINAVMDKLA 175 >gi|210622490|ref|ZP_03293195.1| hypothetical protein CLOHIR_01143 [Clostridium hiranonis DSM 13275] gi|210154203|gb|EEA85209.1| hypothetical protein CLOHIR_01143 [Clostridium hiranonis DSM 13275] Length = 173 Score = 108 bits (271), Expect = 2e-22, Method: Composition-based stats. Identities = 33/159 (20%), Positives = 67/159 (42%), Gaps = 25/159 (15%) Query: 18 IARLAAVQALYQIDIIGCSTTE---------------IISEYETYRFCADTELDVESVYL 62 +R ++ +Y +D++ ++ I++ +E + + + DV Sbjct: 10 TSREYMMKFIYNLDVVKDDLSDLENKVKEFLVGNEEYIVNRFEELKLQSSNDSDVHESME 69 Query: 63 ---HVDLEWFRVI--IHGVM----DRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVL 113 +DLE + + + V ++ + ID I + WS + + +ILR + Sbjct: 70 TEEEIDLENYLNLDYVSNVCKIYEEKHEEIDEAIDKY-AKGWSIMTMPKVDVAILRLAIA 128 Query: 114 ELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDK 152 E+ S+P +V I+E + +A + PKFIN VL Sbjct: 129 EIGFIDSIPEKVSINEAIEMAKMYCDDKSPKFINGVLGS 167 >gi|315604170|ref|ZP_07879236.1| conserved hypothetical protein [Actinomyces sp. oral taxon 180 str. F0310] gi|315313876|gb|EFU61927.1| conserved hypothetical protein [Actinomyces sp. oral taxon 180 str. F0310] Length = 208 Score = 108 bits (271), Expect = 2e-22, Method: Composition-based stats. Identities = 37/144 (25%), Positives = 58/144 (40%), Gaps = 9/144 (6%) Query: 16 RGIARLAAVQALYQIDIIGCSTT-EIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74 R AR A +Y+ D G + + + + R E+ II Sbjct: 10 RTKARKRAADVVYEADQRGMGSNPDALRDLLRERRVITAAQTPLP-------EFSLRIIG 62 Query: 75 GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134 GV D + ID LIS+ R+ + +++R V E++E V ++I E V I Sbjct: 63 GVADNLRRIDSLISAH-ARVPGLDRIAAVDLAVMRVAVWEMLENDEVSPIIVIDEAVSIV 121 Query: 135 HDFFYGDEPKFINAVLDKVSRKEE 158 P F+NAVLD + + E Sbjct: 122 RSISTDTSPAFVNAVLDAIRKDLE 145 >gi|116491235|ref|YP_810779.1| transcription termination factor [Oenococcus oeni PSU-1] gi|118586758|ref|ZP_01544195.1| transcription termination protein NusB [Oenococcus oeni ATCC BAA-1163] gi|290890780|ref|ZP_06553847.1| hypothetical protein AWRIB429_1237 [Oenococcus oeni AWRIB429] gi|116091960|gb|ABJ57114.1| Transcription termination factor [Oenococcus oeni PSU-1] gi|118432846|gb|EAV39575.1| transcription termination protein NusB [Oenococcus oeni ATCC BAA-1163] gi|290479552|gb|EFD88209.1| hypothetical protein AWRIB429_1237 [Oenococcus oeni AWRIB429] Length = 130 Score = 108 bits (270), Expect = 3e-22, Method: Composition-based stats. Identities = 26/143 (18%), Positives = 56/143 (39%), Gaps = 14/143 (9%) Query: 12 LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71 +S R R + QA++ ++I ++ + + D ++F Sbjct: 1 MSLSRQQIRELSFQAIFALEINSDQDKALLKKVLFKQNTID--------------DYFNE 46 Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131 ++ GV + ++ L + WS R+ ++ G+ EL +P +V + + Sbjct: 47 LVDGVFAVHKELEEKYKPYLKDNWSLERISKTADIAMQIGLFELTSRIDIPKKVSLDQAT 106 Query: 132 CIAHDFFYGDEPKFINAVLDKVS 154 +A +F + KF+N VL Sbjct: 107 ELAKNFGDESDGKFVNGVLAHFV 129 >gi|34762362|ref|ZP_00143364.1| N utilization substance protein B [Fusobacterium nucleatum subsp. vincentii ATCC 49256] gi|27887944|gb|EAA25010.1| N utilization substance protein B [Fusobacterium nucleatum subsp. vincentii ATCC 49256] Length = 153 Score = 108 bits (270), Expect = 3e-22, Method: Composition-based stats. Identities = 29/158 (18%), Positives = 75/158 (47%), Gaps = 5/158 (3%) Query: 1 MTIQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESV 60 M +++ K +AR + ++ ++ ++ ++ ++E Y + + + Sbjct: 1 MNKNFEEQEKKAKGGIRLAREEVFKLVFGTEVTESTSDKLKQDFEIYL---QNDEEFVAT 57 Query: 61 YLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHS 120 LE+ R I+G+ + I +I T+ W++ R+ ++ ++L E++ + Sbjct: 58 LNENQLEFIRDSINGIAKNYEDIKDIIKKN-TKNWAYERIGIVERALLIVATYEILF-KN 115 Query: 121 VPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEE 158 +P+EVI +E V +A ++ +F+N VL + + ++ Sbjct: 116 IPIEVIANEIVELAKEYGNEKSYEFVNGVLANIEKSKK 153 >gi|256846520|ref|ZP_05551977.1| transcription antitermination factor NusB [Fusobacterium sp. 3_1_36A2] gi|294784109|ref|ZP_06749410.1| transcription antitermination factor NusB [Fusobacterium sp. 3_1_27] gi|256718289|gb|EEU31845.1| transcription antitermination factor NusB [Fusobacterium sp. 3_1_36A2] gi|294488179|gb|EFG35524.1| transcription antitermination factor NusB [Fusobacterium sp. 3_1_27] Length = 153 Score = 108 bits (270), Expect = 3e-22, Method: Composition-based stats. Identities = 29/158 (18%), Positives = 74/158 (46%), Gaps = 5/158 (3%) Query: 1 MTIQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESV 60 M +++ K +AR + ++ ++ ++ ++ ++E Y + + + Sbjct: 1 MNKNFEEQEKKAKGGIRLAREEVFKLVFGTEVTESTSDKLKQDFEIYL---QNDEEFVAT 57 Query: 61 YLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHS 120 LE+ R I+G+ + I +I T+ W++ R+ ++ ++L E++ + Sbjct: 58 LNENQLEFIRDSINGIAKNYEDIKDIIKKN-TKNWAYERIGIVERALLIVATYEILF-KN 115 Query: 121 VPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEE 158 P+EVI +E V +A ++ +F+N VL + + ++ Sbjct: 116 TPIEVIANEIVELAKEYGNEKSYEFVNGVLANIEKSKK 153 >gi|313680543|ref|YP_004058282.1| nusb antitermination factor [Oceanithermus profundus DSM 14977] gi|313153258|gb|ADR37109.1| NusB antitermination factor [Oceanithermus profundus DSM 14977] Length = 142 Score = 108 bits (270), Expect = 3e-22, Method: Composition-based stats. Identities = 29/146 (19%), Positives = 52/146 (35%), Gaps = 13/146 (8%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 R AR A + L++ E A + R ++ G Sbjct: 2 RRRARELAFKVLFEHLQGDVPLEE-----------AWRHALEGEELDEEGRAFARRLVEG 50 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135 R +D +++ E W F ++ ++LR E++ P +I V IA Sbjct: 51 FARRAAEVDRILAET-VEGWDFGQMSKTDLAVLRLATYEMLY-EDTPFAPLIEVAVKIAG 108 Query: 136 DFFYGDEPKFINAVLDKVSRKEEIKR 161 + D KF+N VL ++ R+ + Sbjct: 109 KYGGEDSGKFVNGVLARLKRRIDAGE 134 >gi|126664007|ref|ZP_01735001.1| putative N utilization substance protein [Flavobacteria bacterium BAL38] gi|126623956|gb|EAZ94650.1| putative N utilization substance protein [Flavobacteria bacterium BAL38] Length = 302 Score = 108 bits (270), Expect = 3e-22, Method: Composition-based stats. Identities = 29/129 (22%), Positives = 58/129 (44%), Gaps = 5/129 (3%) Query: 40 IISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHI-DLLISSCLTEKWSFS 98 I+ + + + DT + + D ++ + + + + + I T W Sbjct: 172 IVKQIKQLKSEKDTLIVPKVYKDEDDKDFVKNLFRRTVLNEVELSKEYIDK--TPNWDVE 229 Query: 99 RLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEE 158 R+ I IL+ + EL++ S+P +V I+EY+ IA ++ FIN +LD + + E Sbjct: 230 RIAEIDTIILKMAICELLKFPSIPTKVTINEYLEIAKEYSTPKSSIFINGILDNLVK--E 287 Query: 159 IKRSGCVSA 167 R G ++ Sbjct: 288 FNRDGKLNK 296 >gi|229825477|ref|ZP_04451546.1| hypothetical protein GCWU000182_00837 [Abiotrophia defectiva ATCC 49176] gi|229790040|gb|EEP26154.1| hypothetical protein GCWU000182_00837 [Abiotrophia defectiva ATCC 49176] Length = 138 Score = 108 bits (270), Expect = 3e-22, Method: Composition-based stats. Identities = 35/146 (23%), Positives = 63/146 (43%), Gaps = 12/146 (8%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 R R + ++ D E ++E+Y ++ + D E ++ + Sbjct: 3 RREFREHTAKLIFIFDF--YPEAEWKEQFESYADYSEIKEDREGLWQR---------VMA 51 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135 + ++K +D LI ++KW SRL +LR V E+ +P +V ++E V +A Sbjct: 52 LEEKKAEVDSLIDGA-SKKWRISRLSKTDLMLLRVAVYEIKFDSEIPDKVSVNEAVELAK 110 Query: 136 DFFYGDEPKFINAVLDKVSRKEEIKR 161 + + P F+N VL K EE K Sbjct: 111 IYGGDESPAFVNGVLAKFMSGEEAKE 136 >gi|260654155|ref|ZP_05859645.1| transcription antitermination factor NusB [Jonquetella anthropi E3_33 E1] gi|260631140|gb|EEX49334.1| transcription antitermination factor NusB [Jonquetella anthropi E3_33 E1] Length = 165 Score = 108 bits (270), Expect = 3e-22, Method: Composition-based stats. Identities = 45/166 (27%), Positives = 63/166 (37%), Gaps = 12/166 (7%) Query: 1 MTIQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEI---ISEYETYRFCADT-ELD 56 MT + K S ++ + R AVQAL+ +D + ++E F D E+D Sbjct: 1 MTTES--KGNISSQKQHLRRFLAVQALFALDSSADPAGTLRLLADDWELLGFHGDELEID 58 Query: 57 VE-----SVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAG 111 E D V +D LI+ CL W RLD + +ILR Sbjct: 59 DETASQLPAISAEDCGAAVQWAERVWSHLDQVDSLIAPCL-RGWRLPRLDGVDRAILRLC 117 Query: 112 VLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKE 157 E SV V SE V +A KF+N V+ + R E Sbjct: 118 FFESRVEGSVNDAVAASEAVILAKAMGGEQSAKFVNGVIGSIMRGE 163 >gi|282850892|ref|ZP_06260266.1| transcription antitermination factor NusB [Lactobacillus gasseri 224-1] gi|282557844|gb|EFB63432.1| transcription antitermination factor NusB [Lactobacillus gasseri 224-1] Length = 133 Score = 107 bits (269), Expect = 4e-22, Method: Composition-based stats. Identities = 27/138 (19%), Positives = 63/138 (45%), Gaps = 11/138 (7%) Query: 20 RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79 R A+QA+Y + + E + + ++++ L ++ I++GV+ Sbjct: 7 RRIAMQAIYLANQGNLTNAEEVCQKA-----------LKALELKSFPDYSTEIVNGVLAN 55 Query: 80 KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139 K+ +D +S L + W +R++ I +IL + E+ + ++E + + +F Sbjct: 56 KKALDEQLSKYLKKGWRLNRINEIDLAILEVALYEMQNSKVIEPVAALNEALNLCDEFSS 115 Query: 140 GDEPKFINAVLDKVSRKE 157 + KF+N +L +K+ Sbjct: 116 KESKKFVNGLLANFIKKD 133 >gi|227875419|ref|ZP_03993560.1| possible transcription antitermination protein NusB [Mobiluncus mulieris ATCC 35243] gi|227843973|gb|EEJ54141.1| possible transcription antitermination protein NusB [Mobiluncus mulieris ATCC 35243] Length = 182 Score = 107 bits (269), Expect = 4e-22, Method: Composition-based stats. Identities = 28/130 (21%), Positives = 55/130 (42%), Gaps = 8/130 (6%) Query: 24 VQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHI 83 + LY+ + + I R +TE ++ + R I+ GV + I Sbjct: 1 MDVLYEAHLKDLDDSAGIYSLAKLR---ETETTAQTPMP----PYAREILEGVAEHLDRI 53 Query: 84 DLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEP 143 D +++ + WS R+ + +I+R E++ V V I+ + +A + + P Sbjct: 54 DAALATY-SRAWSLHRMPEVDLAIMRVATWEILFNPDVDGPVAITAAMQLAAERSTDESP 112 Query: 144 KFINAVLDKV 153 KFIN +L + Sbjct: 113 KFINGLLGTI 122 >gi|164688612|ref|ZP_02212640.1| hypothetical protein CLOBAR_02257 [Clostridium bartlettii DSM 16795] gi|164603025|gb|EDQ96490.1| hypothetical protein CLOBAR_02257 [Clostridium bartlettii DSM 16795] Length = 169 Score = 107 bits (269), Expect = 4e-22, Method: Composition-based stats. Identities = 37/164 (22%), Positives = 70/164 (42%), Gaps = 19/164 (11%) Query: 11 KLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFC------------------AD 52 + +R +R ++ +YQ I T++ +E E + D Sbjct: 3 NIRAKRETSREYLMKLMYQTYISNGDITDLENELEGFLENNQEYIISRYKELVLTYSDRD 62 Query: 53 TELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGV 112 LD +V VD + + + R I+ LI + T+ WS +R I +IL+ + Sbjct: 63 VNLDDVTVNKCVDKAYLTKVCDILRLRIDDINELIENN-TKNWSINRFSKIDLAILQIAI 121 Query: 113 LELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRK 156 E++ ++P +V I++ + +A + PKFIN +L V + Sbjct: 122 AEMLSDLNIPEKVSINQAIDLAKIYCEEKTPKFINGILGSVVDE 165 >gi|289643066|ref|ZP_06475197.1| NusB antitermination factor [Frankia symbiont of Datisca glomerata] gi|289507110|gb|EFD28078.1| NusB antitermination factor [Frankia symbiont of Datisca glomerata] Length = 99 Score = 107 bits (269), Expect = 4e-22, Method: Composition-based stats. Identities = 26/82 (31%), Positives = 42/82 (51%), Gaps = 1/82 (1%) Query: 67 EWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVI 126 E+ ++ GV++R ID ++S E+W+ R+ + +ILR G LEL+ +P V Sbjct: 3 EYTVSLVEGVVERLADIDEMLSDH-AEEWTLERMPPVDRNILRIGALELLWREDIPDGVA 61 Query: 127 ISEYVCIAHDFFYGDEPKFINA 148 I E V +A P F+N Sbjct: 62 IDEAVALAGLVSTERSPVFVNG 83 >gi|300361963|ref|ZP_07058140.1| transcription antitermination factor NusB [Lactobacillus gasseri JV-V03] gi|300354582|gb|EFJ70453.1| transcription antitermination factor NusB [Lactobacillus gasseri JV-V03] Length = 133 Score = 107 bits (269), Expect = 4e-22, Method: Composition-based stats. Identities = 29/138 (21%), Positives = 59/138 (42%), Gaps = 11/138 (7%) Query: 20 RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79 R A+QA+Y + E A + L ++ I++GV+ Sbjct: 7 RRIAMQAIY---LANQGNLTDAEEVCQKALKA--------LELKSFPDYSAEIVNGVLAN 55 Query: 80 KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139 K+ +D +S L + W +R++ I +IL + E+ ++ ++E + + +F Sbjct: 56 KKELDEQLSKYLKKGWRLNRINEIDLAILEVALYEMQNSKAIEPVAALNEALNLCDEFSS 115 Query: 140 GDEPKFINAVLDKVSRKE 157 + KFIN +L +K+ Sbjct: 116 KESKKFINGLLANFIKKD 133 >gi|262066420|ref|ZP_06026032.1| transcription antitermination factor NusB [Fusobacterium periodonticum ATCC 33693] gi|291379847|gb|EFE87365.1| transcription antitermination factor NusB [Fusobacterium periodonticum ATCC 33693] Length = 152 Score = 107 bits (269), Expect = 4e-22, Method: Composition-based stats. Identities = 26/139 (18%), Positives = 66/139 (47%), Gaps = 5/139 (3%) Query: 17 GIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGV 76 +AR + ++ + + E+ +++ Y + + + LE+ R I+G+ Sbjct: 17 RLAREELFKLVFGAESTEATPDELKQDFDIYL---QNDEEFIATLNENQLEFIRSSINGI 73 Query: 77 MDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHD 136 + +I +I T+ W++SR+ ++ ++L E + + P+EV+ +E V +A + Sbjct: 74 AENYDNIKDIIKKN-TKNWAYSRIGLVERTLLIIATYEFLF-KNTPIEVVANETVELAKE 131 Query: 137 FFYGDEPKFINAVLDKVSR 155 + +F+N +L + + Sbjct: 132 YGNEKSYEFVNGILANIGK 150 >gi|257463858|ref|ZP_05628244.1| transcription antitermination protein NusB [Fusobacterium sp. D12] gi|317061389|ref|ZP_07925874.1| N utilization substance protein B [Fusobacterium sp. D12] gi|313687065|gb|EFS23900.1| N utilization substance protein B [Fusobacterium sp. D12] Length = 138 Score = 107 bits (269), Expect = 5e-22, Method: Composition-based stats. Identities = 37/149 (24%), Positives = 69/149 (46%), Gaps = 11/149 (7%) Query: 10 LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF 69 ++ R AR + ++Q +I G S + +E + E D + + Sbjct: 1 MREKMTRREAREELFKWIFQTEIQGNSMEKA---FEYSSLREEIEKDEVTKL------FL 51 Query: 70 RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISE 129 G+ + ++ I+ I + +T W FSR+ + S+L+ V E+ +PVE+I++E Sbjct: 52 ERYRKGLAEHREEIETKIQAAMT-DWDFSRIGYVEKSLLKLAVYEM-YFEDLPVEIIVNE 109 Query: 130 YVCIAHDFFYGDEPKFINAVLDKVSRKEE 158 V IA + +FIN VL KV + ++ Sbjct: 110 AVEIAKIYGDVKTHEFINGVLAKVIKMKQ 138 >gi|255038668|ref|YP_003089289.1| NusB antitermination factor [Dyadobacter fermentans DSM 18053] gi|254951424|gb|ACT96124.1| NusB antitermination factor [Dyadobacter fermentans DSM 18053] Length = 388 Score = 107 bits (269), Expect = 5e-22, Method: Composition-based stats. Identities = 34/142 (23%), Positives = 61/142 (42%), Gaps = 5/142 (3%) Query: 27 LYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLL 86 LY D + I T +L + D + + V+ D+ Sbjct: 242 LYWADHAELIRSLAIKTLRTADDAHTFQLAPLTKDWEEDRAFVEELCKIVIRESDQYDVY 301 Query: 87 ISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFI 146 + L + W R+ ++ IL+ + ELI +PV+V I+E++ IA + KF+ Sbjct: 302 LEDQL-KNWELERIALVDLIILKTALAELIHFPGIPVKVTINEFIEIAKRYSTPKSGKFV 360 Query: 147 NAVLD----KVSRKEEIKRSGC 164 N VLD K++++ I++SG Sbjct: 361 NGVLDVLSVKLAKEGVIRKSGR 382 >gi|116629407|ref|YP_814579.1| transcription termination factor [Lactobacillus gasseri ATCC 33323] gi|311110942|ref|ZP_07712339.1| transcription antitermination factor NusB [Lactobacillus gasseri MV-22] gi|116094989|gb|ABJ60141.1| Transcription termination factor [Lactobacillus gasseri ATCC 33323] gi|311066096|gb|EFQ46436.1| transcription antitermination factor NusB [Lactobacillus gasseri MV-22] Length = 133 Score = 107 bits (269), Expect = 5e-22, Method: Composition-based stats. Identities = 27/138 (19%), Positives = 63/138 (45%), Gaps = 11/138 (7%) Query: 20 RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79 R A+QA+Y + + E + + ++++ L ++ I++GV+ Sbjct: 7 RRIAMQAIYLANQGNLTNAEEVCQKA-----------LKALELKSFPDYSTEIVNGVLAN 55 Query: 80 KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139 K+ +D +S L + W +R++ I +IL + E+ + ++E + + +F Sbjct: 56 KKALDEQLSKYLKKGWRLNRINEIDLAILEVALYEMQNSKVIEPVAALNEALNLCDEFSS 115 Query: 140 GDEPKFINAVLDKVSRKE 157 + KF+N +L +K+ Sbjct: 116 KESKKFVNGLLANFIKKD 133 >gi|237741349|ref|ZP_04571830.1| N utilization substance protein B [Fusobacterium sp. 4_1_13] gi|229430881|gb|EEO41093.1| N utilization substance protein B [Fusobacterium sp. 4_1_13] Length = 153 Score = 107 bits (268), Expect = 5e-22, Method: Composition-based stats. Identities = 28/158 (17%), Positives = 74/158 (46%), Gaps = 5/158 (3%) Query: 1 MTIQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESV 60 M +++ K +AR + ++ ++ ++ ++ ++E Y + + + Sbjct: 1 MNKNFEEQEKKAKGGIRLAREEVFKLVFGTEVTESTSDKLKQDFEIYL---QNDEEFVAT 57 Query: 61 YLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHS 120 LE+ R I+G+ + I +I T+ W++ R+ ++ ++L E++ + Sbjct: 58 LNENQLEFIRDSINGIAKNYEDIKDIIKKN-TKNWAYERIGIVERALLIVATYEILF-KN 115 Query: 121 VPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEE 158 P+EVI +E V +A ++ +F+N +L + + ++ Sbjct: 116 TPIEVIANEIVELAKEYGNEKSYEFVNGILANIEKSKK 153 >gi|325954222|ref|YP_004237882.1| NusB antitermination factor [Weeksella virosa DSM 16922] gi|323436840|gb|ADX67304.1| NusB antitermination factor [Weeksella virosa DSM 16922] Length = 306 Score = 107 bits (268), Expect = 5e-22, Method: Composition-based stats. Identities = 22/94 (23%), Positives = 41/94 (43%), Gaps = 1/94 (1%) Query: 63 HVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVP 122 D ++ + + + + I + E W R+ + IL + E S+P Sbjct: 197 EEDQKFAQDLFRLTVKHQSQNKEFIGQ-MAENWELDRIAAVDLIILEMAITEFKHFPSIP 255 Query: 123 VEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRK 156 +V I+EY+ +A ++ F+N +LDK RK Sbjct: 256 TKVTINEYIELAKNYSTEKSRIFVNGILDKALRK 289 >gi|154173840|ref|YP_001407739.1| transcription antitermination protein NusB [Campylobacter curvus 525.92] gi|166215674|sp|A7GWZ7|NUSB_CAMC5 RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|112803582|gb|EAU00926.1| transcription antitermination factor NusB [Campylobacter curvus 525.92] Length = 131 Score = 107 bits (268), Expect = 6e-22, Method: Composition-based stats. Identities = 34/138 (24%), Positives = 54/138 (39%), Gaps = 14/138 (10%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 R R A V LY ++ G E E+ + + Sbjct: 4 RHQVRQAVVSLLYAHEM-GSEMNEFKDEFLEEKKIRNERKIQALETFDA----------- 51 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135 + +K +D ++ L EK R+ ++ +ILR GV E+ VII+E + +A Sbjct: 52 ICLKKGELDEILKPYLKEK-DIERIGIVELAILRLGVYEMKFTG-TDKAVIINEAIELAK 109 Query: 136 DFFYGDEPKFINAVLDKV 153 + PKFIN VLD + Sbjct: 110 ELGGDSAPKFINGVLDAL 127 >gi|257465920|ref|ZP_05630231.1| transcription antitermination protein NusB [Fusobacterium gonidiaformans ATCC 25563] gi|315917076|ref|ZP_07913316.1| transcription antitermination protein NusB [Fusobacterium gonidiaformans ATCC 25563] gi|317058823|ref|ZP_07923308.1| transcription antitermination protein NusB [Fusobacterium sp. 3_1_5R] gi|313684499|gb|EFS21334.1| transcription antitermination protein NusB [Fusobacterium sp. 3_1_5R] gi|313690951|gb|EFS27786.1| transcription antitermination protein NusB [Fusobacterium gonidiaformans ATCC 25563] Length = 134 Score = 107 bits (268), Expect = 6e-22, Method: Composition-based stats. Identities = 36/143 (25%), Positives = 65/143 (45%), Gaps = 11/143 (7%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 R AR + ++Q +I G S E +E + E D V + G Sbjct: 3 RREAREELFKWIFQTEIQGNSVEEA---FEHSFLREEIEKD------EVSKVFLERYRKG 53 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135 +++ ++ + I + +T W R+ + S+L+ V E+ +PVE+I++E V IA Sbjct: 54 MVEHQEEVAEKIEAAMT-DWDLPRIGYVEKSLLKIAVYEI-YFEDLPVEIIVNEAVEIAK 111 Query: 136 DFFYGDEPKFINAVLDKVSRKEE 158 + +FIN VL KV + ++ Sbjct: 112 IYGDVKTHEFINGVLAKVIKMKK 134 >gi|257452280|ref|ZP_05617579.1| transcription antitermination protein NusB [Fusobacterium sp. 3_1_5R] Length = 138 Score = 107 bits (267), Expect = 6e-22, Method: Composition-based stats. Identities = 36/149 (24%), Positives = 67/149 (44%), Gaps = 11/149 (7%) Query: 10 LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF 69 ++ R AR + ++Q +I G S E +E + E D V + Sbjct: 1 MREKMTRREAREELFKWIFQTEIQGNSVEEA---FEHSFLREEIEKD------EVSKVFL 51 Query: 70 RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISE 129 G+++ ++ + I + +T W R+ + S+L+ V E+ +PVE+I++E Sbjct: 52 ERYRKGMVEHQEEVAEKIEAAMT-DWDLPRIGYVEKSLLKIAVYEI-YFEDLPVEIIVNE 109 Query: 130 YVCIAHDFFYGDEPKFINAVLDKVSRKEE 158 V IA + +FIN VL KV + ++ Sbjct: 110 AVEIAKIYGDVKTHEFINGVLAKVIKMKK 138 >gi|269792648|ref|YP_003317552.1| NusB antitermination factor [Thermanaerovibrio acidaminovorans DSM 6589] gi|269100283|gb|ACZ19270.1| NusB antitermination factor [Thermanaerovibrio acidaminovorans DSM 6589] Length = 148 Score = 107 bits (267), Expect = 6e-22, Method: Composition-based stats. Identities = 35/147 (23%), Positives = 59/147 (40%), Gaps = 12/147 (8%) Query: 12 LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71 L +R AR A+Q Y +D+ E LD E + ++ Sbjct: 5 LPKKRRRARELALQLGYLMDMRQ--------ELGINEVLGSLPLDEEDPEV---RDYAVA 53 Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131 + G+ +Q ++ ++ L W R+ + +R +LE VP V ISE V Sbjct: 54 LTSGLYRERQRLEGILRERLV-GWRPERMVAVDRVAIRLAILEGYLERLVPFPVAISEAV 112 Query: 132 CIAHDFFYGDEPKFINAVLDKVSRKEE 158 +A F D +F+N VL ++ + E Sbjct: 113 ELAKLFGTEDSGRFVNGVLGRIFKDLE 139 >gi|282895593|ref|ZP_06303727.1| NusB antitermination factor [Raphidiopsis brookii D9] gi|281199433|gb|EFA74297.1| NusB antitermination factor [Raphidiopsis brookii D9] Length = 213 Score = 107 bits (267), Expect = 7e-22, Method: Composition-based stats. Identities = 29/106 (27%), Positives = 50/106 (47%), Gaps = 2/106 (1%) Query: 53 TELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGV 112 EL + + + I+ V + + +D +IS L W +RL I IL+ V Sbjct: 108 PELIQLANQDKEVRNYAKEIVVTVDENRTILDQIISQALV-DWQVTRLAQIDRDILQIAV 166 Query: 113 LELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEE 158 E+ VP + I+E V +A + D +FIN VL +V+ +++ Sbjct: 167 AEMKFM-EVPPSIAINEAVELAKRYSGDDGHRFINGVLRRVTEQKQ 211 >gi|260062175|ref|YP_003195255.1| NusB family protein [Robiginitalea biformata HTCC2501] gi|88783737|gb|EAR14908.1| NusB family protein [Robiginitalea biformata HTCC2501] Length = 366 Score = 107 bits (267), Expect = 7e-22, Method: Composition-based stats. Identities = 29/122 (23%), Positives = 58/122 (47%), Gaps = 3/122 (2%) Query: 47 YRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCS 106 ++ ++ L + D+E+ ++ +++ ++ I T W R+ I Sbjct: 243 HQGAPESYLLPALLKNSEDMEFAMDLLRKTLNKNAALEAEIEGK-TPNWDKERIAEIDGI 301 Query: 107 ILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRSGCVS 166 +L+ G+ EL+ S+P V I+EY+ IA ++ FIN +LDK+ R E + +G + Sbjct: 302 LLKMGIAELLYFPSIPERVTINEYLEIAKEYSTPKSSIFINGILDKLIR--EYREAGRLK 359 Query: 167 AI 168 Sbjct: 360 KT 361 >gi|220909702|ref|YP_002485013.1| transcription antitermination protein NusB [Cyanothece sp. PCC 7425] gi|254772629|sp|B8HYJ8|NUSB_CYAP4 RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|219866313|gb|ACL46652.1| NusB antitermination factor [Cyanothece sp. PCC 7425] Length = 209 Score = 107 bits (267), Expect = 8e-22, Method: Composition-based stats. Identities = 43/166 (25%), Positives = 72/166 (43%), Gaps = 7/166 (4%) Query: 4 QDNKKDLKLSHRRGIARLAA--VQAL-YQIDIIGCSTTEIISEYETYRFCADTELD--VE 58 QD + + +RG RL A +QA+ Q + ++E R +L V+ Sbjct: 46 QDALETAAMELKRGRDRLLASEIQAVDVQSSRAMVTEAITLAETAVNRLGMVLDLPEFVQ 105 Query: 59 SVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIEC 118 ++ I+ V+ + ID L+ + L W F+RL I +ILR V E++ Sbjct: 106 LANQQQVRDFSLDILKQVLTHRTAIDHLLETALV-DWQFNRLAQIDRNILRIAVAEILYL 164 Query: 119 HSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRSGC 164 P +V I+E V +A + D +F+N VL + E + G Sbjct: 165 K-TPTQVTINEAVELAKRYSDEDGYRFVNGVLRRTIPHLEAQAQGT 209 >gi|313676012|ref|YP_004054008.1| nusb antitermination factor [Marivirga tractuosa DSM 4126] gi|312942710|gb|ADR21900.1| NusB antitermination factor [Marivirga tractuosa DSM 4126] Length = 382 Score = 107 bits (267), Expect = 8e-22, Method: Composition-based stats. Identities = 29/114 (25%), Positives = 58/114 (50%), Gaps = 3/114 (2%) Query: 54 ELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVL 113 EL S D E+F+ + ++ + ++S + W+ R+ ++ IL+ V Sbjct: 263 ELIELSANWEDDSEFFKDLFTNTINNDDEYEKIVSDF-AKNWASERIAIVDMIILKMAVS 321 Query: 114 ELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRSGCVSA 167 E++ S+PV+V I+EY+ ++ ++ F+N +LDK+S K E + G + Sbjct: 322 EMLNFPSIPVKVTINEYIELSKNYSTQKSKIFVNGMLDKISAKLE--KDGKIKK 373 >gi|313673615|ref|YP_004051726.1| nusb antitermination factor [Calditerrivibrio nitroreducens DSM 19672] gi|312940371|gb|ADR19563.1| NusB antitermination factor [Calditerrivibrio nitroreducens DSM 19672] Length = 141 Score = 106 bits (266), Expect = 8e-22, Method: Composition-based stats. Identities = 36/143 (25%), Positives = 68/143 (47%), Gaps = 14/143 (9%) Query: 12 LSHRR-GIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFR 70 + +R R A+ LY + + E I + + E+ +ES+ Sbjct: 1 MGGKRLTKIRKYALN-LYYMHLQNGELLETIVDSLVKYNGFNKEILLESLG--------- 50 Query: 71 VIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEY 130 ++ +++ +D LIS L + W +RL M+ ILR + EL E + P++V I +Y Sbjct: 51 -LLKKAIEKTVFLDELISKYLKQGWDLNRLPMVDLLILRLAIFELFESND-PIKV-IDDY 107 Query: 131 VCIAHDFFYGDEPKFINAVLDKV 153 V +A+ + + P +IN +L+K+ Sbjct: 108 VTLANKYSEQNSPGYINGILEKI 130 >gi|293192887|ref|ZP_06609731.1| n utilization substance protein B [Actinomyces odontolyticus F0309] gi|292819943|gb|EFF78942.1| n utilization substance protein B [Actinomyces odontolyticus F0309] Length = 320 Score = 106 bits (266), Expect = 9e-22, Method: Composition-based stats. Identities = 34/143 (23%), Positives = 55/143 (38%), Gaps = 10/143 (6%) Query: 16 RGIARLAAVQALYQIDIIGCSTT-EIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74 R AR A +++ D G E++ + R E+ II Sbjct: 10 RTKARKRAADVVFEADQRGMGRDPEVLRDLLRERRVITAAQTPLP-------EYSIQIIA 62 Query: 75 GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELI-ECHSVPVEVIISEYVCI 133 GV D + ID LI + R+ + +++R V E++ V V I E + I Sbjct: 63 GVADSLRRIDDLIEAH-ARVPGLDRVAAVDLAVMRVAVWEMLANSDDVSPIVAIDEAISI 121 Query: 134 AHDFFYGDEPKFINAVLDKVSRK 156 P+F+NAVLD + + Sbjct: 122 VRSISTDASPRFVNAVLDAIRKD 144 >gi|238852556|ref|ZP_04642966.1| transcription antitermination factor NusB [Lactobacillus gasseri 202-4] gi|238834702|gb|EEQ26929.1| transcription antitermination factor NusB [Lactobacillus gasseri 202-4] Length = 133 Score = 106 bits (266), Expect = 1e-21, Method: Composition-based stats. Identities = 29/138 (21%), Positives = 58/138 (42%), Gaps = 11/138 (7%) Query: 20 RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79 R A+QA+Y + E A + L ++ I++GV+ Sbjct: 7 RRIAMQAIY---LANQGNLTDAEEVCQKALKA--------LELKSFPDYSTEIVNGVLAN 55 Query: 80 KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139 K+ +D +S L + W +R++ I +IL + E+ + ++E + + +F Sbjct: 56 KKVLDEQLSKYLKKGWRLNRINEIDLAILEVALYEMQNSKVIEPVAALNEALNLCDEFSS 115 Query: 140 GDEPKFINAVLDKVSRKE 157 + KFIN +L +K+ Sbjct: 116 KESKKFINGLLANFIKKD 133 >gi|154508767|ref|ZP_02044409.1| hypothetical protein ACTODO_01276 [Actinomyces odontolyticus ATCC 17982] gi|153798401|gb|EDN80821.1| hypothetical protein ACTODO_01276 [Actinomyces odontolyticus ATCC 17982] Length = 320 Score = 106 bits (265), Expect = 1e-21, Method: Composition-based stats. Identities = 34/143 (23%), Positives = 55/143 (38%), Gaps = 10/143 (6%) Query: 16 RGIARLAAVQALYQIDIIGCSTT-EIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74 R AR A +++ D G E++ + R E+ II Sbjct: 10 RTKARKRAADVVFEADQRGMGRDPEVLRDLLRERRVITAAQTPLP-------EYSIQIIA 62 Query: 75 GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELI-ECHSVPVEVIISEYVCI 133 GV D + ID LI + R+ + +++R V E++ V V I E + I Sbjct: 63 GVADSLRRIDDLIEAH-ARVPGLDRVAAVDLAVMRVAVWEMLANSDDVSPIVAIDEAISI 121 Query: 134 AHDFFYGDEPKFINAVLDKVSRK 156 P+F+NAVLD + + Sbjct: 122 VRSISTDASPRFVNAVLDAIRKD 144 >gi|296117827|ref|ZP_06836410.1| n utilization substance protein B-like protein [Corynebacterium ammoniagenes DSM 20306] gi|295969058|gb|EFG82300.1| n utilization substance protein B-like protein [Corynebacterium ammoniagenes DSM 20306] Length = 220 Score = 106 bits (265), Expect = 1e-21, Method: Composition-based stats. Identities = 31/128 (24%), Positives = 56/128 (43%), Gaps = 8/128 (6%) Query: 28 YQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLI 87 Y+ + I+ + + + E V + E+ +V++ GV + ID I Sbjct: 2 YEAENRDMDPVAIVED--RIKLAREDEHGVAPI-----AEYTKVLVTGVAEELDTIDSTI 54 Query: 88 SSCLTEKWSFSRLDMILCSILRAGVLELIEC-HSVPVEVIISEYVCIAHDFFYGDEPKFI 146 L E W R+ + +I+R V EL+ + + +SE V +A ++ +I Sbjct: 55 ERYLAEDWELYRIPAVDRAIMRVAVWELLYNSEEIDLATAVSEGVELASEYSTDAAAPYI 114 Query: 147 NAVLDKVS 154 NAVLD V+ Sbjct: 115 NAVLDDVA 122 >gi|289422315|ref|ZP_06424165.1| transcription antitermination factor NusB [Peptostreptococcus anaerobius 653-L] gi|289157260|gb|EFD05875.1| transcription antitermination factor NusB [Peptostreptococcus anaerobius 653-L] Length = 164 Score = 106 bits (265), Expect = 1e-21, Method: Composition-based stats. Identities = 28/157 (17%), Positives = 65/157 (41%), Gaps = 15/157 (9%) Query: 15 RRGIARLAAVQALYQIDIIGCSTTEIISEYETY--------------RFCADTELDVESV 60 +R ++R ++ LYQ ++ +++ +++E + + +L Sbjct: 9 QRKVSRELFMKFLYQEAVLKSDWSDLKAKFEEFIPSVQDDAMEIHNSHGGRELDLLEMPG 68 Query: 61 YLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHS 120 L +D + ++ ++ ID I+ KW+ L ++ +ILR + E++ Sbjct: 69 DLLLDASYLMDMVAAFDANREEIDSNINKF-ARKWTIDTLPIVDVAILRMAITEILYMID 127 Query: 121 VPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKE 157 +P + E V +A + K+IN +L V + Sbjct: 128 IPDGITCDEAVNLAKKYCDDGAYKYINGILGSVVNDK 164 >gi|163755270|ref|ZP_02162390.1| putative N utilization substance protein [Kordia algicida OT-1] gi|161324690|gb|EDP96019.1| putative N utilization substance protein [Kordia algicida OT-1] Length = 302 Score = 106 bits (265), Expect = 1e-21, Method: Composition-based stats. Identities = 26/129 (20%), Positives = 56/129 (43%), Gaps = 3/129 (2%) Query: 40 IISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSR 99 I+ + + + E D + R + + + + I T W R Sbjct: 172 ILKSIKQAKPGKERIFLSELYKDDEDKVFVRDLFRKTVLNDEMLTAEIQGK-TPNWDKDR 230 Query: 100 LDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEI 159 + + +L+ + EL++ S+P +V I+EY+ +A ++ F+N +LDK+ + E Sbjct: 231 IANLDLILLKMAICELLKFPSIPAKVTINEYIELAKEYSTSKSSMFVNGILDKLIK--EY 288 Query: 160 KRSGCVSAI 168 K+ ++ I Sbjct: 289 KKENKLNKI 297 >gi|222823552|ref|YP_002575126.1| transcription antitermination factor NusB [Campylobacter lari RM2100] gi|254772621|sp|B9KFP0|NUSB_CAMLR RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|222538774|gb|ACM63875.1| transcription antitermination factor NusB [Campylobacter lari RM2100] Length = 132 Score = 106 bits (265), Expect = 1e-21, Method: Composition-based stats. Identities = 33/143 (23%), Positives = 66/143 (46%), Gaps = 14/143 (9%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 R R + V LY + + + I+E+ + + + ++ + +G Sbjct: 4 RHQVRQSIVSLLYAAQLNQEN-KDFINEFLDEKKIRNDQ-----------RKFTLDLYNG 51 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135 + ++ +D I+ CL E + I +ILR G E++ S +II+E + +A Sbjct: 52 INEQLALLDEKINECLKEH-KLDGVASIEKAILRLGAYEILFT-STQKAIIINEAIELAK 109 Query: 136 DFFYGDEPKFINAVLDKVSRKEE 158 + + PKFIN VLDK++++ + Sbjct: 110 EMAGDNAPKFINGVLDKINKEVQ 132 >gi|306818731|ref|ZP_07452453.1| possible transcription antitermination protein NusB [Mobiluncus mulieris ATCC 35239] gi|304648417|gb|EFM45720.1| possible transcription antitermination protein NusB [Mobiluncus mulieris ATCC 35239] Length = 182 Score = 106 bits (265), Expect = 1e-21, Method: Composition-based stats. Identities = 27/130 (20%), Positives = 56/130 (43%), Gaps = 8/130 (6%) Query: 24 VQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHI 83 + LY+ + + I R +TE ++ + R I+ G+ + + I Sbjct: 1 MDVLYEAHLKDLDDSAGIYSLAKLR---ETETTAQTPMP----SYAREILEGIAEHLERI 53 Query: 84 DLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEP 143 D +++ + WS R+ + +I+R E++ V V I+ + +A + + P Sbjct: 54 DAALATY-SRAWSLHRMPEVDLAIMRVATWEILFNPDVDGPVAITAAMQLAAERSTDESP 112 Query: 144 KFINAVLDKV 153 KFIN +L + Sbjct: 113 KFINGLLGTI 122 >gi|71066624|ref|YP_265351.1| NusB antitermination factor [Psychrobacter arcticus 273-4] gi|119390801|sp|Q4FPZ1|NUSB_PSYA2 RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|71039609|gb|AAZ19917.1| probable NusB antitermination factor [Psychrobacter arcticus 273-4] Length = 375 Score = 105 bits (264), Expect = 1e-21, Method: Composition-based stats. Identities = 29/147 (19%), Positives = 61/147 (41%), Gaps = 4/147 (2%) Query: 17 GIARLAAVQALYQIDIIGC--STTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74 AR A+Q LY+ + + + V + ++ ++ Sbjct: 52 RKARRFAMQGLYEWLVTDRRFDIDGKLGWKANAPHDIAARTRATNAMHTVHIGYYHEMMR 111 Query: 75 GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134 + ++ ++ LI+ L + ++LD + +IL G EL +P +V++ E + + Sbjct: 112 DIPEQIDALNTLITQQLDRE--INKLDTVEHAILLIGAYELQNRLEIPYKVVLDEAMKLN 169 Query: 135 HDFFYGDEPKFINAVLDKVSRKEEIKR 161 + F D K INAVLD+++ + Sbjct: 170 NHFGATDAHKLINAVLDRMAVELRAPE 196 >gi|291287239|ref|YP_003504055.1| NusB antitermination factor [Denitrovibrio acetiphilus DSM 12809] gi|290884399|gb|ADD68099.1| NusB antitermination factor [Denitrovibrio acetiphilus DSM 12809] Length = 147 Score = 105 bits (264), Expect = 1e-21, Method: Composition-based stats. Identities = 28/154 (18%), Positives = 59/154 (38%), Gaps = 12/154 (7%) Query: 10 LKLSHR-RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEW 68 +K + + R R A +YQ+ I + EI + D + +E+ Sbjct: 1 MKKNFKARTRGRKFAYMMMYQLIIADYTPKEITKTFWNSVKEEDESV----------IEF 50 Query: 69 FRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIIS 128 + G + D +I + W++ R+ + ILR V EL P +I+ Sbjct: 51 ANRLFTGAAESVDANDEIICRYIRSDWTYERMGEVEKDILRVAVHEL-FRQEAPYYAVIN 109 Query: 129 EYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRS 162 ++V +A + +N +L+ + + ++ Sbjct: 110 DFVTLARKYSDEKSASLVNGILENIRKNFKLSEG 143 >gi|167756946|ref|ZP_02429073.1| hypothetical protein CLORAM_02495 [Clostridium ramosum DSM 1402] gi|237734649|ref|ZP_04565130.1| predicted protein [Mollicutes bacterium D7] gi|167703121|gb|EDS17700.1| hypothetical protein CLORAM_02495 [Clostridium ramosum DSM 1402] gi|229382469|gb|EEO32560.1| predicted protein [Coprobacillus sp. D7] Length = 134 Score = 105 bits (264), Expect = 2e-21, Method: Composition-based stats. Identities = 36/144 (25%), Positives = 63/144 (43%), Gaps = 11/144 (7%) Query: 10 LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF 69 +K +R+ I R AV A YQ ++ + EI + D + D ++ Sbjct: 1 MKK-YRKKIIREKAVIATYQKLLVDTNEDEIREYLNS---------DKDLSSNQDDFDYC 50 Query: 70 RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISE 129 + I + + ++ L W+ RL + +IL G EL+E EVII+E Sbjct: 51 FMFIISIASNIERYKAEVAKYLKPGWTLDRLSKMELAILLVGCYELLETEQS-KEVIINE 109 Query: 130 YVCIAHDFFYGDEPKFINAVLDKV 153 V ++ + D KFIN +L+++ Sbjct: 110 AVELSKKYCDSDAYKFINGLLNRI 133 >gi|307244294|ref|ZP_07526409.1| transcription antitermination factor NusB [Peptostreptococcus stomatis DSM 17678] gi|306492444|gb|EFM64482.1| transcription antitermination factor NusB [Peptostreptococcus stomatis DSM 17678] Length = 156 Score = 105 bits (263), Expect = 2e-21, Method: Composition-based stats. Identities = 30/155 (19%), Positives = 55/155 (35%), Gaps = 15/155 (9%) Query: 15 RRGIARLAAVQALYQIDIIG--------------CSTTEIISEYETYRFCADTELDVESV 60 +R ++R ++ LY + S + E + ++ Sbjct: 2 QRKVSREIFMKYLYSRAVSNAGWEGLSQDLDRFLDSVEDDAIEIHKSHGGKEIDMLDSYR 61 Query: 61 YLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHS 120 + +D + V D ID I+ W+ + + +ILR V E+ + Sbjct: 62 EVILDSSYLMDAARAVEDNIGAIDAYINEY-ARNWTTDTMPAVDVAILRLAVAEIKFMFT 120 Query: 121 VPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSR 155 +P V E V IA + D K+IN +L V + Sbjct: 121 IPEVVACDEAVNIAKKYCDDDAYKYINGILGSVMK 155 >gi|282899369|ref|ZP_06307337.1| NusB antitermination factor [Cylindrospermopsis raciborskii CS-505] gi|281195736|gb|EFA70665.1| NusB antitermination factor [Cylindrospermopsis raciborskii CS-505] Length = 213 Score = 105 bits (263), Expect = 2e-21, Method: Composition-based stats. Identities = 29/106 (27%), Positives = 49/106 (46%), Gaps = 2/106 (1%) Query: 53 TELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGV 112 EL + + + I+ V + + +D +IS L W +RL I IL+ V Sbjct: 108 PELIQLANQDKEVRNYAKEIVVTVDENRPILDQIISQALV-DWQVTRLAQIDRDILQIAV 166 Query: 113 LELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEE 158 E+ VP + I+E V +A + D +FIN VL +V +++ Sbjct: 167 AEMKFM-EVPPSIAINEAVELAKRYSGDDGHRFINGVLRRVIDQKQ 211 >gi|317124726|ref|YP_004098838.1| NusB antitermination factor [Intrasporangium calvum DSM 43043] gi|315588814|gb|ADU48111.1| NusB antitermination factor [Intrasporangium calvum DSM 43043] Length = 137 Score = 105 bits (262), Expect = 3e-21, Method: Composition-based stats. Identities = 30/139 (21%), Positives = 62/139 (44%), Gaps = 12/139 (8%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 R AR A+ L++ D G + ++ E + + + ++ G Sbjct: 4 RSKARARALDILFEADQRGLNAEVLLDERLR-----------DPESRAGNNPYTADLVRG 52 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135 V+ R + ID ++ ++ W+ R+ + +ILR G E++ +P I+E V +A Sbjct: 53 VVGRWRDIDAALTDY-SQGWTLDRMPAVDRAILRVGAWEVLFNDDIPDAAAIAEAVALAT 111 Query: 136 DFFYGDEPKFINAVLDKVS 154 + + P F+N +L ++S Sbjct: 112 ELSTDESPGFVNGLLARLS 130 >gi|227549190|ref|ZP_03979239.1| transcription antitermination protein NusB [Corynebacterium lipophiloflavum DSM 44291] gi|227078750|gb|EEI16713.1| transcription antitermination protein NusB [Corynebacterium lipophiloflavum DSM 44291] Length = 188 Score = 105 bits (262), Expect = 3e-21, Method: Composition-based stats. Identities = 31/143 (21%), Positives = 59/143 (41%), Gaps = 7/143 (4%) Query: 24 VQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHI 83 V L++ + ++ + D ++ + E+ R II GV ++ I Sbjct: 18 VDILFEAETRDIDPVAVVEDRIELA------QDPQNAVAPI-AEYTREIITGVAEKLDDI 70 Query: 84 DLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEP 143 D + L++ W RL + ILR E++ V + IS + +A ++ P Sbjct: 71 DDAVEQFLSQDWELGRLPAVDRQILRVAAWEILFNDDVAAPIAISNALGMAEEYAGHAAP 130 Query: 144 KFINAVLDKVSRKEEIKRSGCVS 166 +I+AVLD V + + S + Sbjct: 131 PYIHAVLDDVVKTLPVPESAPPA 153 >gi|282856378|ref|ZP_06265657.1| transcription antitermination factor NusB [Pyramidobacter piscolens W5455] gi|282585749|gb|EFB91038.1| transcription antitermination factor NusB [Pyramidobacter piscolens W5455] Length = 174 Score = 105 bits (262), Expect = 3e-21, Method: Composition-based stats. Identities = 38/158 (24%), Positives = 66/158 (41%), Gaps = 20/158 (12%) Query: 17 GIARLAAVQALYQID-IIGCSTTEIISE------YETYRFCADTELDVESVYLHVDLE-- 67 AR+ Q L +D + G ++ E + A+ + ES D E Sbjct: 13 HAARVRLFQILCALDSLGGKKLDQLEVEASLEELFVEPEAVAENGAEAESGETDADEESV 72 Query: 68 --------WFRVIIHGVMDRKQ--HIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIE 117 + R H + R+ ID LI + TE W R+ ++ +I+R + E + Sbjct: 73 LTRVPFADYRRSCEHACLVRRALPEIDALIETYSTE-WKTERMSLVDRTIIRLALYEAVI 131 Query: 118 CHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSR 155 VP V +SE V +A ++ D +F+N VL ++ + Sbjct: 132 AKKVPPGVALSEAVRLAKEYGSDDSSRFVNGVLARIVK 169 >gi|320093590|ref|ZP_08025479.1| N utilization substance protein B [Actinomyces sp. oral taxon 178 str. F0338] gi|319979461|gb|EFW10934.1| N utilization substance protein B [Actinomyces sp. oral taxon 178 str. F0338] Length = 323 Score = 105 bits (262), Expect = 3e-21, Method: Composition-based stats. Identities = 34/143 (23%), Positives = 54/143 (37%), Gaps = 10/143 (6%) Query: 16 RGIARLAAVQALYQIDIIGCSTT-EIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74 R AR A +++ D G E + + R E+ II Sbjct: 10 RTKARKRAADVVFEADQRGMGRDPEALRDLLRERRVITAAQTPLP-------EYSIQIIA 62 Query: 75 GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELI-ECHSVPVEVIISEYVCI 133 GV D + ID LI + R+ + +++R V E++ V V I E + I Sbjct: 63 GVADSLRRIDDLIEAH-ARVPGLDRVAAVDLAVMRVAVWEMLANSDDVSPIVAIDEAISI 121 Query: 134 AHDFFYGDEPKFINAVLDKVSRK 156 P+F+NAVLD + + Sbjct: 122 VRSISTDASPRFVNAVLDAIRKD 144 >gi|256372479|ref|YP_003110303.1| NusB antitermination factor [Acidimicrobium ferrooxidans DSM 10331] gi|256009063|gb|ACU54630.1| NusB antitermination factor [Acidimicrobium ferrooxidans DSM 10331] Length = 145 Score = 105 bits (262), Expect = 3e-21, Method: Composition-based stats. Identities = 33/139 (23%), Positives = 58/139 (41%), Gaps = 22/139 (15%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 R + R ++ LY+ D G + +++ + + R I G Sbjct: 12 RAVWRERVLELLYEADTKGEAPADLLR--------------------GDEPAFIRERIRG 51 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135 + +R+ ID +++ + W RL I +ILR EL+E S P V I+E V +A Sbjct: 52 LTERRSEIDAQLTAHVI-GWQLERLAPIDRAILRLATAELLEA-STPPSVAIAEAVKLAD 109 Query: 136 DFFYGDEPKFINAVLDKVS 154 + F+N VL ++ Sbjct: 110 RYSTERSAAFVNGVLASIA 128 >gi|226226881|ref|YP_002760987.1| antitermination protein NusB [Gemmatimonas aurantiaca T-27] gi|226090072|dbj|BAH38517.1| antitermination protein NusB [Gemmatimonas aurantiaca T-27] Length = 157 Score = 104 bits (261), Expect = 3e-21, Method: Composition-based stats. Identities = 39/165 (23%), Positives = 63/165 (38%), Gaps = 21/165 (12%) Query: 1 MTIQDNKKDLKLSHRRGIARL---------AAVQALYQIDIIGCSTTEIISEYETYRFCA 51 M K + + R + R A+QALY D+ + + I+ Sbjct: 1 MQEPLAPKQGRRTRGRKVTREERMETRGRARALQALYAADLRDLTQVKRIATTVFDDLAI 60 Query: 52 DTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAG 111 D + + +I V DR +D + +T W RL I S+LR Sbjct: 61 DP----------AERLFASRLIATVADRGAVLDAALVE-VTANWRLERLGAIERSVLRLA 109 Query: 112 VLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRK 156 EL PV+V++ E V +A + +F+N VLD +R+ Sbjct: 110 AAEL-AREETPVKVVLQEAVHLAERYGTERSARFVNGVLDAYARR 153 >gi|313896544|ref|ZP_07830093.1| transcription antitermination factor NusB [Selenomonas sp. oral taxon 137 str. F0430] gi|312974729|gb|EFR40195.1| transcription antitermination factor NusB [Selenomonas sp. oral taxon 137 str. F0430] Length = 121 Score = 104 bits (261), Expect = 3e-21, Method: Composition-based stats. Identities = 17/98 (17%), Positives = 40/98 (40%), Gaps = 2/98 (2%) Query: 59 SVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIEC 118 DL + + ++ G ID I+ ++W R+ + +++R E+ Sbjct: 22 EGLKEKDLPYAQGLVRGTRAALGEIDAAIARS-AKEWKLERMPGVDRNLIRMAFYEMYYQ 80 Query: 119 HS-VPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSR 155 + I+E V +A + D +++N +L + + Sbjct: 81 EERIDPGTAINEAVELAKKYGAEDAGRYVNGILSAMQK 118 >gi|257059341|ref|YP_003137229.1| transcription antitermination protein NusB [Cyanothece sp. PCC 8802] gi|256589507|gb|ACV00394.1| NusB antitermination factor [Cyanothece sp. PCC 8802] Length = 235 Score = 104 bits (261), Expect = 4e-21, Method: Composition-based stats. Identities = 27/97 (27%), Positives = 47/97 (48%), Gaps = 2/97 (2%) Query: 66 LEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEV 125 E+ +I V R+ ID + + L W +RL I ILR V E++ +P +V Sbjct: 141 REYALELIGAVNRRRTEIDQQLEAVLV-DWQLNRLPKIDRDILRIAVAEILF-LEIPNKV 198 Query: 126 IISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRS 162 I+E + +A + + +FIN VL + + + I + Sbjct: 199 AINEAIEMAKRYSDDEGYRFINGVLRRFTERLRITNN 235 >gi|184200984|ref|YP_001855191.1| antitermination factor NusB [Kocuria rhizophila DC2201] gi|183581214|dbj|BAG29685.1| transcription antitermination protein NusB [Kocuria rhizophila DC2201] Length = 138 Score = 104 bits (261), Expect = 4e-21, Method: Composition-based stats. Identities = 30/144 (20%), Positives = 62/144 (43%), Gaps = 14/144 (9%) Query: 12 LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71 +S R AR+ AV+ L++ + S + + + Sbjct: 1 MSGARSKARVRAVEILFEAEQRNESVRDALVRRRENSSSPIN-------------PYTVE 47 Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131 I+ GV +R++ ID + + ++ W+ R+ + + LR G EL+ +P V ++E V Sbjct: 48 ILEGVDERREDIDEFLETY-SQGWALGRMPAVDRNALRVGAWELLYNSEIPDGVAVAEAV 106 Query: 132 CIAHDFFYGDEPKFINAVLDKVSR 155 + D P+F+N +L ++ + Sbjct: 107 AVTRQLSTDDSPRFVNGLLGRLQK 130 >gi|104774290|ref|YP_619270.1| transcription antitermination protein NusB [Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842] gi|103423371|emb|CAI98227.1| Transcription antitermination protein NusB [Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842] gi|325126077|gb|ADY85407.1| Transcriptional termination factor [Lactobacillus delbrueckii subsp. bulgaricus 2038] Length = 132 Score = 104 bits (261), Expect = 4e-21, Method: Composition-based stats. Identities = 28/140 (20%), Positives = 57/140 (40%), Gaps = 11/140 (7%) Query: 17 GIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGV 76 +R A+QA+Y + + SE E A + L + + ++ GV Sbjct: 4 HDSRRIALQAIY---LYNQDPSFTASELENNVKSA--------LDLDTLPAYSQELVSGV 52 Query: 77 MDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHD 136 +D++ + +S+ L + W RL +IL + E++ + I+E + + + Sbjct: 53 IDKQAELRDKLSANLKQGWRLERLSKTSLAILEVALYEMLYSPVIEDRSAINEALNLCDE 112 Query: 137 FFYGDEPKFINAVLDKVSRK 156 F FIN +L ++ Sbjct: 113 FDDPKSKAFINGILANFVQE 132 >gi|268608467|ref|ZP_06142194.1| transcription termination factor [Ruminococcus flavefaciens FD-1] Length = 138 Score = 104 bits (261), Expect = 4e-21, Method: Composition-based stats. Identities = 33/147 (22%), Positives = 65/147 (44%), Gaps = 14/147 (9%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 R R +A + +++ + TE+ E + + I+ G Sbjct: 3 RREIRDSAFKLVFEQLLRDDDITELYDIAEEIDEIIVNDE-------------VKKIVEG 49 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135 + + +D +I+ ++ S SR+ + +ILR + E + + P+ ISE + +A+ Sbjct: 50 TLAHAEELDSIIAGY-SKSRSLSRISKLNIAILRIAIYESLYDDNTPMNAAISEAINLAN 108 Query: 136 DFFYGDEPKFINAVLDKVSRKEEIKRS 162 + Y ++ KFIN VL SR ++ K S Sbjct: 109 TYSYNEDSKFINGVLGAFSRDQKQKES 135 >gi|254303389|ref|ZP_04970747.1| N utilization substance protein B [Fusobacterium nucleatum subsp. polymorphum ATCC 10953] gi|148323581|gb|EDK88831.1| N utilization substance protein B [Fusobacterium nucleatum subsp. polymorphum ATCC 10953] Length = 155 Score = 104 bits (261), Expect = 4e-21, Method: Composition-based stats. Identities = 27/141 (19%), Positives = 66/141 (46%), Gaps = 5/141 (3%) Query: 17 GIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGV 76 +AR + ++ + ++ E+ +++ Y + + LE+ R I+G+ Sbjct: 17 RLAREEVFKLVFGAEATEATSDELKQDFDIYL---QNDEKFIATLNENQLEFIRSSINGI 73 Query: 77 MDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHD 136 + +I +I T+ W+++R+ +I ++L E + P+EVI +E V +A + Sbjct: 74 AENYDNIKDIIKKN-TKNWAYARIGVIERALLIVATYEFSF-KNTPIEVIANEIVELAKE 131 Query: 137 FFYGDEPKFINAVLDKVSRKE 157 + +F+N +L + + + Sbjct: 132 YGNEKSYEFVNGILANIEKNK 152 >gi|300811637|ref|ZP_07092113.1| transcription antitermination factor NusB [Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4] gi|300497338|gb|EFK32384.1| transcription antitermination factor NusB [Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4] gi|325685900|gb|EGD27966.1| transcription antitermination protein NusB [Lactobacillus delbrueckii subsp. lactis DSM 20072] Length = 132 Score = 104 bits (260), Expect = 4e-21, Method: Composition-based stats. Identities = 28/140 (20%), Positives = 57/140 (40%), Gaps = 11/140 (7%) Query: 17 GIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGV 76 +R A+QA+Y + + SE E A + L + + ++ GV Sbjct: 4 HDSRRIALQAIY---LYNQDPSVTASELENNVKSA--------LDLDTLPAYSQELVSGV 52 Query: 77 MDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHD 136 +D++ + +S+ L + W RL +IL + E++ + I+E + + + Sbjct: 53 IDKQAELRDKLSANLKQGWRLERLSKTSLAILEVALYEMLYSPVIEDRSAINEALNLCDE 112 Query: 137 FFYGDEPKFINAVLDKVSRK 156 F FIN +L ++ Sbjct: 113 FDDPKSKAFINGILANFVQE 132 >gi|323701798|ref|ZP_08113469.1| sun protein [Desulfotomaculum nigrificans DSM 574] gi|323533334|gb|EGB23202.1| sun protein [Desulfotomaculum nigrificans DSM 574] Length = 453 Score = 104 bits (260), Expect = 5e-21, Method: Composition-based stats. Identities = 31/143 (21%), Positives = 60/143 (41%), Gaps = 13/143 (9%) Query: 15 RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74 ++ AR A+Q L +++ E Y A +D + I + Sbjct: 2 KKVTARDLALQVL-----------KVVEEEGAYANLALNRYLELYQPGKLDRAFATEITY 50 Query: 75 GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134 GV+ ID +++ L + + + + +ILR G +++ VP +E V +A Sbjct: 51 GVLRNLNTIDWVLAHFLKQ--PLAAQTVWVRNILRMGTYQIMFMPRVPDSAACNESVELA 108 Query: 135 HDFFYGDEPKFINAVLDKVSRKE 157 + + KF+N VL V+R++ Sbjct: 109 KKYGHTGAAKFVNGVLRNVARQQ 131 >gi|261366965|ref|ZP_05979848.1| transcription antitermination factor NusB [Subdoligranulum variabile DSM 15176] gi|282571083|gb|EFB76618.1| transcription antitermination factor NusB [Subdoligranulum variabile DSM 15176] Length = 138 Score = 104 bits (260), Expect = 5e-21, Method: Composition-based stats. Identities = 24/104 (23%), Positives = 50/104 (48%), Gaps = 2/104 (1%) Query: 55 LDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLE 114 L + D + R ++ + D + +D LI+ L + W+ +R+ + LR G+ E Sbjct: 30 LPAGAEQPEAD-AFARQLLAAMNDHSEELDALIAGHL-KGWTLNRVPRVSLVALRLGLAE 87 Query: 115 LIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEE 158 ++ V I+E V + + ++ +F+N +L V+R+ E Sbjct: 88 MLYGEEQKPGVAINEAVELVKKYGADNDYQFVNGLLGTVARERE 131 >gi|301167989|emb|CBW27575.1| putative N utilisation protein [Bacteriovorax marinus SJ] Length = 157 Score = 104 bits (260), Expect = 5e-21, Method: Composition-based stats. Identities = 33/154 (21%), Positives = 58/154 (37%), Gaps = 13/154 (8%) Query: 14 HRRGIARLAAVQALY----------QIDIIGCSTTEIISEYETYRF--CADTELDVESVY 61 + + IAR + + +Y ++ + E E + E + Sbjct: 5 NNKTIAREFSFKLIYKVLCGNENLLELMLSKNPKAEYERFMEEFTNSCIEPDEEHPNNQL 64 Query: 62 LHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSV 121 + +I GV K ++ IS L K ++L+ I ++L G E+ + Sbjct: 65 PSGAQNFALSLIDGVFTNKASLEDEISKHL-RKRKINQLEKIDYALLMLGCYEIQNVDAT 123 Query: 122 PVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSR 155 P V+I E V +A F D FIN LD + + Sbjct: 124 PKAVVIDEMVNLARKFGTADTYSFINGTLDSIGK 157 >gi|67921757|ref|ZP_00515274.1| Antitermination protein NusB [Crocosphaera watsonii WH 8501] gi|67856349|gb|EAM51591.1| Antitermination protein NusB [Crocosphaera watsonii WH 8501] Length = 209 Score = 104 bits (259), Expect = 7e-21, Method: Composition-based stats. Identities = 34/145 (23%), Positives = 60/145 (41%), Gaps = 13/145 (8%) Query: 27 LYQIDIIGCSTTEI---------ISEYETYRFCADTELD--VESVYLHVDLEWFRVIIHG 75 L+Q + + +++ R + E V+ H ++ +I Sbjct: 67 LFQSETRATTVESAKTMIEDALTLTQTAINRLASAVEFPEIVQLATQHEVRQYAIELIAT 126 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135 V R+ ID + L + W RL I ILR V E++ +P +V I+E V +A Sbjct: 127 VARRRNDIDQQLEVVL-KDWQLKRLAKIDQDILRLAVAEILF-LDIPEKVAINEAVELAK 184 Query: 136 DFFYGDEPKFINAVLDKVSRKEEIK 160 + D +FIN VL + + + + K Sbjct: 185 RYSDDDGYRFINGVLRRFTDQMKQK 209 >gi|158336915|ref|YP_001518090.1| transcription antitermination protein NusB [Acaryochloris marina MBIC11017] gi|189035877|sp|B0C5Q2|NUSB_ACAM1 RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|158307156|gb|ABW28773.1| transcription antitermination protein NusB [Acaryochloris marina MBIC11017] Length = 205 Score = 104 bits (259), Expect = 7e-21, Method: Composition-based stats. Identities = 26/91 (28%), Positives = 46/91 (50%), Gaps = 2/91 (2%) Query: 66 LEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEV 125 ++ +I V + ID ++ + L W RL I ++LR V E+ +P +V Sbjct: 113 RDYTLDLIGAVHHHRDEIDQILETSLV-DWQLHRLAHIDANLLRLAVAEMKY-LDIPNQV 170 Query: 126 IISEYVCIAHDFFYGDEPKFINAVLDKVSRK 156 I+E V +A + + +FIN VL +V+R+ Sbjct: 171 AINESVELAKKYSAEEGHRFINGVLRRVTRQ 201 >gi|16331086|ref|NP_441814.1| transcription antitermination protein NusB [Synechocystis sp. PCC 6803] gi|1653579|dbj|BAA18492.1| N utilization substance protein B [Synechocystis sp. PCC 6803] Length = 275 Score = 103 bits (258), Expect = 7e-21, Method: Composition-based stats. Identities = 33/105 (31%), Positives = 48/105 (45%), Gaps = 5/105 (4%) Query: 66 LEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEV 125 ++ +I V R+Q ID + + W SRL I ILR + EL VP +V Sbjct: 174 RKFALELIGTVCRRRQQIDEQLQEAMV-DWQLSRLAKIDQDILRLAIAELDY-LGVPQKV 231 Query: 126 IISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRSGCVSAITQ 170 I+E V +A + D +FIN VL +V+ E K G + Sbjct: 232 AINEAVELAKRYSGQDGHRFINGVLRRVT---EKKTDGAPVTPGE 273 >gi|220928955|ref|YP_002505864.1| sun protein [Clostridium cellulolyticum H10] gi|219999283|gb|ACL75884.1| sun protein [Clostridium cellulolyticum H10] Length = 449 Score = 103 bits (258), Expect = 8e-21, Method: Composition-based stats. Identities = 28/141 (19%), Positives = 59/141 (41%), Gaps = 13/141 (9%) Query: 18 IARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVM 77 +AR A++ LY I+E Y + +D + +++G + Sbjct: 5 LARETALKILY-----------DITENHAYSNISVNRHLENDKLREIDRSFATELVYGTV 53 Query: 78 DRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDF 137 ID ++ + K +L + +ILR G+ +L+ +PV + V +A + Sbjct: 54 KWLLQIDYVLGKYSSVK--LKKLSPWIKNILRLGIYQLLHTDRIPVSAACNTGVELAKRY 111 Query: 138 FYGDEPKFINAVLDKVSRKEE 158 + +F+NAVL +++ + Sbjct: 112 GHQASSRFVNAVLRNIAKSKN 132 >gi|225849626|ref|YP_002729860.1| transcription antitermination protein NusB [Persephonella marina EX-H1] gi|254772650|sp|C0QT45|NUSB_PERMH RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|225645609|gb|ACO03795.1| transcription antitermination factor NusB [Persephonella marina EX-H1] Length = 142 Score = 103 bits (258), Expect = 8e-21, Method: Composition-based stats. Identities = 33/144 (22%), Positives = 57/144 (39%), Gaps = 11/144 (7%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 R AR + LY DI G EI+ ++ D+ +++ I+ G Sbjct: 5 RKKAREIVFRTLYTYDIKGGDLFEIMEDHIK---------DIRGKLSKKTVDYIYSILKG 55 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135 + + ID ++ L + W RL ++LR GV EL+ + + + + Sbjct: 56 IDEHLPEIDDILRENL-KNWRLERLGYPERALLRLGVYELLFSDIEDKGRVFMDILDLTK 114 Query: 136 DFFY-GDEPKFINAVLDKVSRKEE 158 + D KFIN VL V + + Sbjct: 115 CYIDNPDTVKFINGVLSTVYKNRQ 138 >gi|294083737|ref|YP_003550494.1| NusB antitermination factor [Candidatus Puniceispirillum marinum IMCC1322] gi|292663309|gb|ADE38410.1| NusB antitermination factor [Candidatus Puniceispirillum marinum IMCC1322] Length = 160 Score = 103 bits (258), Expect = 8e-21, Method: Composition-based stats. Identities = 38/132 (28%), Positives = 60/132 (45%), Gaps = 5/132 (3%) Query: 24 VQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHI 83 +Q LYQ I ++ + +Y T+ ++ +D E + GV + Sbjct: 24 IQILYQSQITDRASVDFAPDYLTHYA---PDVSKSFRVKDLDHEHLNALYTGVEKEMVLL 80 Query: 84 DLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEP 143 D I+ L WS RL +I ++LR G EL +P ++SEY I+ E Sbjct: 81 DEDIADSLASGWSIKRLPLIELTLLRCGAYELRFMPHIPARAVVSEYAAISDACG--CEV 138 Query: 144 KFINAVLDKVSR 155 F+NAVLD++SR Sbjct: 139 AFVNAVLDRLSR 150 >gi|167949504|ref|ZP_02536578.1| transcription antitermination protein NusB [Endoriftia persephone 'Hot96_1+Hot96_2'] Length = 182 Score = 103 bits (257), Expect = 9e-21, Method: Composition-based stats. Identities = 26/102 (25%), Positives = 46/102 (45%), Gaps = 13/102 (12%) Query: 12 LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71 +S +R AR AVQA+YQ + G I ++ E ++ +F+ Sbjct: 1 MSKKRSQARRHAVQAIYQWQMAGQDLAAIYEQFL-----------GEQDLSQFEVPYFKD 49 Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVL 113 ++HGV + Q +D L+ L + +D + ++LR GV Sbjct: 50 LLHGVPNNLQELDGLLKPALDR--AIESVDPVERAVLRLGVY 89 >gi|186680628|ref|YP_001863824.1| transcription antitermination protein NusB [Nostoc punctiforme PCC 73102] gi|238689253|sp|B2J3F1|NUSB_NOSP7 RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|186463080|gb|ACC78881.1| NusB antitermination factor [Nostoc punctiforme PCC 73102] Length = 213 Score = 103 bits (257), Expect = 9e-21, Method: Composition-based stats. Identities = 28/106 (26%), Positives = 51/106 (48%), Gaps = 2/106 (1%) Query: 53 TELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGV 112 EL + + + ++ V + + ID L+S+ L W +RL + IL+ V Sbjct: 108 PELIQLANQDKGVRNYAKELVITVNENRHIIDELLSTALV-DWQVTRLAQLDRDILQIAV 166 Query: 113 LELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEE 158 E+ VP + I+E V +A + D +FIN VL +V+ +++ Sbjct: 167 AEMKF-LGVPDSIAINEAVELAKRYSGDDGHRFINGVLRRVTEQKK 211 >gi|260495022|ref|ZP_05815151.1| transcription antitermination factor NusB [Fusobacterium sp. 3_1_33] gi|260197465|gb|EEW94983.1| transcription antitermination factor NusB [Fusobacterium sp. 3_1_33] Length = 157 Score = 103 bits (257), Expect = 1e-20, Method: Composition-based stats. Identities = 34/165 (20%), Positives = 75/165 (45%), Gaps = 8/165 (4%) Query: 1 MTIQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESV 60 M +++ K +AR + ++ ++ S+ E+ + Y + + + Sbjct: 1 MNKNFEEQEKKAKGGIRLAREEVFKLVFGAELTESSSDELKQGFSVYL---QNDEEFINA 57 Query: 61 YLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHS 120 LE+ + I+ +++ +I +I T+ W++ R+ +I S+L G E + + Sbjct: 58 LSEKQLEFIKNSINRIVENYDNIKDVIKKN-TQNWTYERIGVIERSLLIVGTYEFL-IKN 115 Query: 121 VPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRSGCV 165 P+EVI +E V +A ++ +FIN +L + E+ K G + Sbjct: 116 TPIEVIANEIVELAKEYGNEKSYEFINGILANI---EKAKNKGTI 157 >gi|298490714|ref|YP_003720891.1| NusB antitermination factor ['Nostoc azollae' 0708] gi|298232632|gb|ADI63768.1| NusB antitermination factor ['Nostoc azollae' 0708] Length = 213 Score = 103 bits (257), Expect = 1e-20, Method: Composition-based stats. Identities = 29/106 (27%), Positives = 49/106 (46%), Gaps = 2/106 (1%) Query: 53 TELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGV 112 EL + + + II V + + ID +IS L W +RL I IL+ Sbjct: 108 PELIQLANQDKEVRNYAKEIIITVNENRNVIDQIISDALV-DWQVTRLAQIDRDILQIAA 166 Query: 113 LELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEE 158 E+ VP + I+E V +A + + +FIN VL +V+ +++ Sbjct: 167 AEMKFMG-VPASIAINEAVELAKRYSGDEGHRFINGVLRRVTEQKQ 211 >gi|282850140|ref|ZP_06259519.1| ribosomal RNA small subunit methyltransferase B [Veillonella parvula ATCC 17745] gi|294793653|ref|ZP_06758790.1| ribosomal RNA small subunit methyltransferase B [Veillonella sp. 3_1_44] gi|282579633|gb|EFB85037.1| ribosomal RNA small subunit methyltransferase B [Veillonella parvula ATCC 17745] gi|294455223|gb|EFG23595.1| ribosomal RNA small subunit methyltransferase B [Veillonella sp. 3_1_44] Length = 451 Score = 103 bits (257), Expect = 1e-20, Method: Composition-based stats. Identities = 39/156 (25%), Positives = 71/156 (45%), Gaps = 14/156 (8%) Query: 12 LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71 ++++ RL AV+AL +I+ G + EY +D +D +F Sbjct: 5 KTNQQQNIRLLAVKALSEINRNGAYANIKLQEYLQKYHLSD-----------LDRRFFTE 53 Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131 +++GV+ RK ++D +I +L ++ ILR G+ ++I VP ++E V Sbjct: 54 LVYGVIRRKNYLDAIIVHFAKR--PLKKLSSMVVEILRLGIYQIIYMDKVPESAAVNESV 111 Query: 132 CIAHDFFYGDEPKFINAVLDKVSRKEEIKRSGCVSA 167 +A G F+NAVL V R+ + G ++ Sbjct: 112 KLAKKLTRGLS-GFVNAVLRSVLRESDSISIGELAK 146 >gi|300781095|ref|ZP_07090949.1| possible transcription antitermination protein NusB [Corynebacterium genitalium ATCC 33030] gi|300532802|gb|EFK53863.1| possible transcription antitermination protein NusB [Corynebacterium genitalium ATCC 33030] Length = 217 Score = 103 bits (257), Expect = 1e-20, Method: Composition-based stats. Identities = 26/130 (20%), Positives = 53/130 (40%), Gaps = 7/130 (5%) Query: 24 VQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHI 83 V L++ + I+ + D + V ++ R II G I Sbjct: 18 VDILFEAETRDVDPVAIVEDRAALA------GDPTNAVAPV-ADYTREIIAGAAAALDEI 70 Query: 84 DLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEP 143 D I L++ W +R+ + +ILR E++ V + I+ + ++ ++ + Sbjct: 71 DNAIERFLSDNWELNRIPAVDRAILRVATWEILYNDEVEPPISIANAMEMSTEYAGDNAS 130 Query: 144 KFINAVLDKV 153 +I+AVLD + Sbjct: 131 PYIHAVLDDI 140 >gi|291544835|emb|CBL17944.1| transcription antitermination factor NusB [Ruminococcus sp. 18P13] Length = 138 Score = 103 bits (257), Expect = 1e-20, Method: Composition-based stats. Identities = 26/147 (17%), Positives = 59/147 (40%), Gaps = 14/147 (9%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 R R A + +++ + E+ + + + R ++ G Sbjct: 6 RREVRDCAFKLIFEKLLRDDPIEELYAIADEVDEITVNDQ-------------VRELVEG 52 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135 +D+ + +D +IS + K SR+ I ++LR + E++ P+ I+E V ++ Sbjct: 53 TLDKTEELDRIISEY-SSKRGLSRIAKINIAVLRIALYEILYDEKTPMNAAINEAVQLSQ 111 Query: 136 DFFYGDEPKFINAVLDKVSRKEEIKRS 162 + ++ F+N VL +R + Sbjct: 112 TYAQQEDVSFVNGVLGAYARAHSSEEG 138 >gi|119510389|ref|ZP_01629523.1| transcription antitermination protein NusB [Nodularia spumigena CCY9414] gi|119464918|gb|EAW45821.1| transcription antitermination protein NusB [Nodularia spumigena CCY9414] Length = 209 Score = 103 bits (257), Expect = 1e-20, Method: Composition-based stats. Identities = 32/115 (27%), Positives = 53/115 (46%), Gaps = 5/115 (4%) Query: 48 RFCADTELDVESVYLHVDLE---WFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMIL 104 + A E + D E + ++ V + + ID ISS L W +RL I Sbjct: 96 QLGAAVEFPELIQLANQDKEVGRYAIQLVKLVNEHRVSIDEEISSALV-DWQVTRLAQID 154 Query: 105 CSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEI 159 ILR V E+ ++P V I+E V +A + + +FIN VL +V+ ++ + Sbjct: 155 RDILRIAVGEMRFF-NLPDRVAINEAVELAKRYSGDEGHRFINGVLRRVTEQKAV 208 >gi|294791792|ref|ZP_06756940.1| ribosomal RNA small subunit methyltransferase B [Veillonella sp. 6_1_27] gi|294457022|gb|EFG25384.1| ribosomal RNA small subunit methyltransferase B [Veillonella sp. 6_1_27] Length = 451 Score = 103 bits (257), Expect = 1e-20, Method: Composition-based stats. Identities = 39/156 (25%), Positives = 71/156 (45%), Gaps = 14/156 (8%) Query: 12 LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71 ++++ RL AV+AL +I+ G + EY +D +D +F Sbjct: 5 KTNQQQNIRLLAVKALSEINRNGAYANIKLQEYLQKYHLSD-----------LDRRFFTE 53 Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131 +++GV+ RK ++D +I +L ++ ILR G+ ++I VP ++E V Sbjct: 54 LVYGVIRRKNYLDAIIVHFAKR--PLKKLSSMVVEILRLGIYQIIYMDKVPESAAVNESV 111 Query: 132 CIAHDFFYGDEPKFINAVLDKVSRKEEIKRSGCVSA 167 +A G F+NAVL V R+ + G ++ Sbjct: 112 KLAKKLTRGLS-GFVNAVLRSVLRESDSISIGELAK 146 >gi|218282376|ref|ZP_03488658.1| hypothetical protein EUBIFOR_01240 [Eubacterium biforme DSM 3989] gi|218216662|gb|EEC90200.1| hypothetical protein EUBIFOR_01240 [Eubacterium biforme DSM 3989] Length = 125 Score = 102 bits (256), Expect = 1e-20, Method: Composition-based stats. Identities = 30/139 (21%), Positives = 64/139 (46%), Gaps = 15/139 (10%) Query: 15 RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74 R R+ A+Q++YQ ++G + + ++ + D + + + Sbjct: 2 NRHEQRVVAMQSVYQHLLLGKDIRKCV--FDVMKGSNDIDG------------YLYSLTM 47 Query: 75 GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134 G ++ K+ + I+ L + W F RL M+ +IL E++ + P V+I+E + +A Sbjct: 48 GTIENKEAFEQKINELLRDDWDFDRLSMLEQAILLISFQEIL-ANDTPKAVVINEAITLA 106 Query: 135 HDFFYGDEPKFINAVLDKV 153 + + K +N VLD++ Sbjct: 107 KKYCDDNSYKLLNGVLDQL 125 >gi|159027396|emb|CAO86880.1| nusB [Microcystis aeruginosa PCC 7806] Length = 217 Score = 102 bits (256), Expect = 1e-20, Method: Composition-based stats. Identities = 26/93 (27%), Positives = 45/93 (48%), Gaps = 2/93 (2%) Query: 66 LEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEV 125 E+ +I V R+ I+ ++ L W RL I IL+ V E++ +P +V Sbjct: 117 REYALELIGTVYRRRAEIEQELTGALV-DWQLHRLPRIDRDILQIAVAEMLY-LDIPQKV 174 Query: 126 IISEYVCIAHDFFYGDEPKFINAVLDKVSRKEE 158 I+E + +A + + +FIN VL +V+ K Sbjct: 175 AINEAIELAKRYSDDEGYRFINGVLRRVTNKLN 207 >gi|326203177|ref|ZP_08193043.1| sun protein [Clostridium papyrosolvens DSM 2782] gi|325986823|gb|EGD47653.1| sun protein [Clostridium papyrosolvens DSM 2782] Length = 467 Score = 102 bits (256), Expect = 1e-20, Method: Composition-based stats. Identities = 30/141 (21%), Positives = 60/141 (42%), Gaps = 13/141 (9%) Query: 18 IARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVM 77 +AR A++ LY I+E + Y + +D + +++G + Sbjct: 23 LARETALKILY-----------DITENQAYSNISVNRHLDNDKLREIDRSFATELVYGTV 71 Query: 78 DRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDF 137 ID +I + K +L + ++LR GV +L+ +PV + V +A + Sbjct: 72 KWLLQIDYIIGKYSSVK--LKKLSPWIKNVLRLGVYQLLHTDRIPVSAACNTAVELAKRY 129 Query: 138 FYGDEPKFINAVLDKVSRKEE 158 + +F+NAVL +S+ + Sbjct: 130 GHQASSRFVNAVLRNISKNID 150 >gi|251770860|gb|EES51447.1| transcription antitermination factor (NusB) [Leptospirillum ferrodiazotrophum] Length = 180 Score = 102 bits (256), Expect = 1e-20, Method: Composition-based stats. Identities = 33/150 (22%), Positives = 62/150 (41%), Gaps = 13/150 (8%) Query: 3 IQDNKKDLKLSHRR--GIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESV 60 + ++ L S RR AR +Q L+ + + + + + E + Sbjct: 1 MTSGRETLPSSRRRALSAARGKVLQRLFAEEYESRPSPDPL-----LKDLIGWEGEDPMA 55 Query: 61 YLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHS 120 + D + ++ K ID +I L WS RL + +ILR G+ E++ + Sbjct: 56 NAYADRLYAEILFR-----KPEIDAVIEE-LARGWSLPRLTRVDRNILRIGLCEILFDPA 109 Query: 121 VPVEVIISEYVCIAHDFFYGDEPKFINAVL 150 +P V + E + +AH F + F+N +L Sbjct: 110 MPFRVSVHEALDLAHRFSDPEAVSFLNGIL 139 >gi|269797911|ref|YP_003311811.1| sun protein [Veillonella parvula DSM 2008] gi|269094540|gb|ACZ24531.1| sun protein [Veillonella parvula DSM 2008] Length = 451 Score = 102 bits (256), Expect = 1e-20, Method: Composition-based stats. Identities = 39/156 (25%), Positives = 71/156 (45%), Gaps = 14/156 (8%) Query: 12 LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71 ++++ RL AV+AL +I+ G + EY +D +D +F Sbjct: 5 KTNQQQNIRLLAVKALSEINRNGAYANIKLQEYLQKYHLSD-----------LDRRFFTE 53 Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131 +++GV+ RK ++D +I +L ++ ILR G+ ++I VP ++E V Sbjct: 54 LVYGVIRRKNYLDAIIVFFAKR--PIKKLSSMVLEILRLGIYQIIYMDKVPESAAVNESV 111 Query: 132 CIAHDFFYGDEPKFINAVLDKVSRKEEIKRSGCVSA 167 +A G F+NAVL V R+ + G ++ Sbjct: 112 KLAKKLTRGLS-GFVNAVLRSVLRESDSISIGELAK 146 >gi|317502725|ref|ZP_07960836.1| NusB family protein [Prevotella salivae DSM 15606] gi|315666169|gb|EFV05725.1| NusB family protein [Prevotella salivae DSM 15606] Length = 317 Score = 102 bits (255), Expect = 2e-20, Method: Composition-based stats. Identities = 29/125 (23%), Positives = 55/125 (44%), Gaps = 3/125 (2%) Query: 31 DIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSC 90 +I+ + I +E ++ EL E D E+ R + + +S Sbjct: 175 EIVDTFVLKTIKRFEQAN-GSEQELLPE-YKDDEDKEFARKLFRATIINADQYQHYMSEA 232 Query: 91 LTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVL 150 + W F RL + I++ + E++ ++PV V I+EYV +A + +IN +L Sbjct: 233 -SRNWDFGRLAYMDIVIMQIAIAEMLTFPNIPVSVTINEYVDLAKLYSTSKSAGYINGML 291 Query: 151 DKVSR 155 D ++R Sbjct: 292 DSIAR 296 >gi|261749509|ref|YP_003257195.1| antitermination protein NusB [Blattabacterium sp. (Periplaneta americana) str. BPLAN] gi|261497602|gb|ACX84052.1| antitermination protein NusB [Blattabacterium sp. (Periplaneta americana) str. BPLAN] Length = 312 Score = 102 bits (255), Expect = 2e-20, Method: Composition-based stats. Identities = 22/93 (23%), Positives = 46/93 (49%), Gaps = 1/93 (1%) Query: 63 HVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVP 122 + ++ + + K+ + LIS ++ W+ R+ +I IL+ + E + ++P Sbjct: 205 DENKKFIVSLYRNTIFHKREFNELIS-NISNNWNIERIAIIDLIILQMAICEFLYFPNIP 263 Query: 123 VEVIISEYVCIAHDFFYGDEPKFINAVLDKVSR 155 + ++EY+ IA F FIN +LD+V + Sbjct: 264 PKATMNEYIEIAKIFCMDKSKTFINGILDQVFK 296 >gi|254468502|ref|ZP_05081908.1| transcription antitermination factor NusB [beta proteobacterium KB13] gi|207087312|gb|EDZ64595.1| transcription antitermination factor NusB [beta proteobacterium KB13] Length = 127 Score = 102 bits (255), Expect = 2e-20, Method: Composition-based stats. Identities = 28/104 (26%), Positives = 50/104 (48%), Gaps = 2/104 (1%) Query: 53 TELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGV 112 ++ + Y D E++ +I G+ + Q I + + + +K L+ I SIL Sbjct: 19 KDILEDPDYCRCDEEFYNSLIDGIKENYQEILEDLDNFMDKKK--EELNPIELSILVVAY 76 Query: 113 LELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRK 156 EL +P +V I+E + I F + KF+N LD+V++K Sbjct: 77 YELKTRVDIPFKVSINEALEITKSFGGQESFKFVNGSLDRVAKK 120 >gi|218246294|ref|YP_002371665.1| transcription antitermination protein NusB [Cyanothece sp. PCC 8801] gi|254772631|sp|B7K4P4|NUSB_CYAP8 RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|218166772|gb|ACK65509.1| NusB antitermination factor [Cyanothece sp. PCC 8801] Length = 211 Score = 102 bits (255), Expect = 2e-20, Method: Composition-based stats. Identities = 27/97 (27%), Positives = 47/97 (48%), Gaps = 2/97 (2%) Query: 66 LEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEV 125 E+ +I V R+ ID + + L W +RL I ILR V E++ +P +V Sbjct: 117 REYALELIGAVNRRRTEIDQQLEAVLV-DWQLNRLPKIDRDILRIAVAEILF-LEIPNKV 174 Query: 126 IISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRS 162 I+E + +A + + +FIN VL + + + I + Sbjct: 175 AINEAIEMAKRYSDDEGYRFINGVLRRFTERLRITNN 211 >gi|146299958|ref|YP_001194549.1| transcription termination factor-like protein [Flavobacterium johnsoniae UW101] gi|146154376|gb|ABQ05230.1| Transcription termination factor-like protein [Flavobacterium johnsoniae UW101] Length = 303 Score = 102 bits (254), Expect = 2e-20, Method: Composition-based stats. Identities = 28/124 (22%), Positives = 56/124 (45%), Gaps = 2/124 (1%) Query: 40 IISEYETYRFCADTELDVESVYLHV-DLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFS 98 II + + + E V +Y V D ++ + + + + + T W Sbjct: 172 IIKQLKAIKTDNPDEFRVPKLYKDVEDKDFAKDLFRRTVLNEAVLAKEYDDK-TPNWDSE 230 Query: 99 RLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEE 158 R+ I IL+ + E ++ S+PV+V ++EY+ IA ++ FIN +LD + ++ E Sbjct: 231 RIAEIDTIILKMAICEFLKFPSIPVKVTLNEYLEIAKEYSTPKSSIFINGILDNLVKELE 290 Query: 159 IKRS 162 + Sbjct: 291 ASKK 294 >gi|91216596|ref|ZP_01253562.1| putative N utilization substance protein [Psychroflexus torquis ATCC 700755] gi|91185390|gb|EAS71767.1| putative N utilization substance protein [Psychroflexus torquis ATCC 700755] Length = 302 Score = 102 bits (254), Expect = 2e-20, Method: Composition-based stats. Identities = 30/133 (22%), Positives = 61/133 (45%), Gaps = 4/133 (3%) Query: 37 TTEIISEYETYRFCADTELDVESVYLHV-DLEWFRVIIHGVMDRKQHIDLLISSCLTEKW 95 ++ + +D + V +Y +V D + + + + + I+ T W Sbjct: 168 VNTTFLKFLQKQKESDEVITVPRLYKNVEDENFAKELFTKTLLANDQLTE-ITKNKTPNW 226 Query: 96 SFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSR 155 R+ I +++ + E ++ S+PV V I+EY+ +A ++ FIN VLD VS+ Sbjct: 227 DQDRIADIDSILIKMALCEFLKFPSIPVRVTINEYLELAKEYSTPKSSTFINGVLDTVSK 286 Query: 156 KEEIKRSGCVSAI 168 E + +G ++ I Sbjct: 287 --EYQTNGKINKI 297 >gi|296133297|ref|YP_003640544.1| sun protein [Thermincola sp. JR] gi|296031875|gb|ADG82643.1| sun protein [Thermincola potens JR] Length = 451 Score = 102 bits (254), Expect = 2e-20, Method: Composition-based stats. Identities = 28/142 (19%), Positives = 58/142 (40%), Gaps = 13/142 (9%) Query: 17 GIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGV 76 AR A++ +YQ+D G + +++ + D + +++G Sbjct: 2 RSARKLALEVIYQVDREGAYSNIALNKVLE-----------KYQPEKKDRAFITELVYGT 50 Query: 77 MDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHD 136 + R +D + ++ L + +I+R G+ ++ VP +E V +A Sbjct: 51 LKRLNTLDWIAGRFVSR--PLDSLTPWIRNIIRMGIYQIFFMDKVPNSAACNESVNLARK 108 Query: 137 FFYGDEPKFINAVLDKVSRKEE 158 F + KF+N VL V R ++ Sbjct: 109 FGHQGTVKFVNGVLRNVVRHKD 130 >gi|294783685|ref|ZP_06749009.1| transcription antitermination factor NusB [Fusobacterium sp. 1_1_41FAA] gi|294480563|gb|EFG28340.1| transcription antitermination factor NusB [Fusobacterium sp. 1_1_41FAA] Length = 152 Score = 102 bits (254), Expect = 2e-20, Method: Composition-based stats. Identities = 23/141 (16%), Positives = 66/141 (46%), Gaps = 5/141 (3%) Query: 17 GIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGV 76 + R + ++ ++ ++ E+ ++ Y + D S L++ + + G+ Sbjct: 17 RLVREELFKLVFGVEATESTSEELEKAFDIYLSNNE---DFVSTLSENQLKFLQTSVKGI 73 Query: 77 MDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHD 136 + +I I + T+ W++ R+ ++ ++L E ++ + P+EV+ +E V +A + Sbjct: 74 SENYDNIKDTIKTN-TQNWAYERIGLVERTLLIIATYEFLKA-NTPIEVVANETVELAKE 131 Query: 137 FFYGDEPKFINAVLDKVSRKE 157 + +F+N +L + + + Sbjct: 132 YGNEKSYEFVNGILANIGKTK 152 >gi|134299563|ref|YP_001113059.1| sun protein [Desulfotomaculum reducens MI-1] gi|134052263|gb|ABO50234.1| sun protein [Desulfotomaculum reducens MI-1] Length = 453 Score = 102 bits (254), Expect = 2e-20, Method: Composition-based stats. Identities = 30/139 (21%), Positives = 61/139 (43%), Gaps = 13/139 (9%) Query: 19 ARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMD 78 AR A+ ++ + + Y A +L + +D + I++GV+ Sbjct: 6 ARELAL-----------LVSKAVEDEGAYANLALNKLLEQYQPGKLDRAFATEIVYGVLR 54 Query: 79 RKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFF 138 ID +++ L + + + + +ILR G +++ VP +E V +A + Sbjct: 55 NLNTIDWVLAHFLKQ--PLASQTVWIRNILRMGTYQIMFMPRVPDSAACNESVNLAKKYG 112 Query: 139 YGDEPKFINAVLDKVSRKE 157 + PKF+N VL V+R++ Sbjct: 113 HQGAPKFVNGVLRNVARQQ 131 >gi|126656189|ref|ZP_01727573.1| transcription antitermination protein NusB [Cyanothece sp. CCY0110] gi|126622469|gb|EAZ93175.1| transcription antitermination protein NusB [Cyanothece sp. CCY0110] Length = 209 Score = 101 bits (253), Expect = 3e-20, Method: Composition-based stats. Identities = 34/138 (24%), Positives = 57/138 (41%), Gaps = 13/138 (9%) Query: 27 LYQIDIIGCSTTEI---------ISEYETYRFCADTELDV--ESVYLHVDLEWFRVIIHG 75 L+Q +I + +++ R E + + E+ +I Sbjct: 67 LFQYEIKATTLESAKTMIKDALTLTQEAINRLANAVEFPEIIQLASQYEVREYTLELIGT 126 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135 + R+Q ID + + L + W RL I ILR V E++ VP +V I+E V +A Sbjct: 127 INRRRQEIDQQLEAVL-KDWQLRRLAKIDQDILRLAVAEILF-LDVPEKVAINEAVELAK 184 Query: 136 DFFYGDEPKFINAVLDKV 153 + D +FIN VL + Sbjct: 185 RYSDDDGYRFINGVLRRF 202 >gi|326803320|ref|YP_004321138.1| transcription antitermination factor NusB [Aerococcus urinae ACS-120-V-Col10a] gi|326650660|gb|AEA00843.1| transcription antitermination factor NusB [Aerococcus urinae ACS-120-V-Col10a] Length = 194 Score = 101 bits (253), Expect = 3e-20, Method: Composition-based stats. Identities = 39/185 (21%), Positives = 68/185 (36%), Gaps = 45/185 (24%) Query: 20 RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLE------------ 67 R AV LYQ ++ ST E E Y +L+ + Y +D E Sbjct: 9 RELAVLTLYQEAMVPESTKE---ESFAYLLANLDDLEDQLSYEEIDQEQLDQLKSQGLPL 65 Query: 68 ----------------------------WFRVIIHGVMDRKQHIDLLISSCLTEKWSFSR 99 +++ ++ + ++ +D I + KWS +R Sbjct: 66 EKSQGQMKSNKRFNQAPVSEDEELSLPPYYQELLDRIASHQESVDQAIEDHIQGKWSLNR 125 Query: 100 LDMILCSILRAGVLELIE--CHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKE 157 L+ + +ILR G E++ VP V + E + +A + +FIN VL + Sbjct: 126 LEAMNLAILRVGAYEILYGDHDRVPGVVAVDEAIHLARRYSDEASRRFINGVLSSILATV 185 Query: 158 EIKRS 162 E K+ Sbjct: 186 EDKQP 190 >gi|313203078|ref|YP_004041735.1| nusb antitermination factor [Paludibacter propionicigenes WB4] gi|312442394|gb|ADQ78750.1| NusB antitermination factor [Paludibacter propionicigenes WB4] Length = 316 Score = 101 bits (253), Expect = 3e-20, Method: Composition-based stats. Identities = 25/111 (22%), Positives = 51/111 (45%), Gaps = 1/111 (0%) Query: 52 DTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAG 111 D + + D E+ R ++ V+ + + +I T+ W R+ + I+ Sbjct: 195 DEQPLLPMFKDEEDAEFARKLMRSVLTKGPKLREMIDVN-TKNWELDRIAFMDIVIMEVA 253 Query: 112 VLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRS 162 + EL++ ++PV V ++EY+ IA + FIN VLD + + + + Sbjct: 254 LAELMDFPTIPVNVTLNEYIEIAKTYSTEKSGTFINGVLDNIVGQLKSENK 304 >gi|237739332|ref|ZP_04569813.1| transcription antitermination protein NusB [Fusobacterium sp. 2_1_31] gi|229422940|gb|EEO37987.1| transcription antitermination protein NusB [Fusobacterium sp. 2_1_31] Length = 152 Score = 101 bits (252), Expect = 4e-20, Method: Composition-based stats. Identities = 23/141 (16%), Positives = 66/141 (46%), Gaps = 5/141 (3%) Query: 17 GIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGV 76 + R + ++ ++ ++ E+ ++ Y + D S L++ + + G+ Sbjct: 17 RLVREELFKIVFGVEATESTSEELEKAFDIYLSNNE---DFVSTLSESQLKFLQTSVKGI 73 Query: 77 MDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHD 136 + +I I + T+ W++ R+ ++ ++L E ++ + P+EV+ +E V +A + Sbjct: 74 SENYDNIKDTIKAN-TQNWAYERIGLVERTLLIIATYEFLKA-NTPIEVVANETVELAKE 131 Query: 137 FFYGDEPKFINAVLDKVSRKE 157 + +F+N +L + + + Sbjct: 132 YGNEKSYEFVNGILANIGKTK 152 >gi|149370659|ref|ZP_01890348.1| putative N utilization substance protein [unidentified eubacterium SCB49] gi|149356210|gb|EDM44767.1| putative N utilization substance protein [unidentified eubacterium SCB49] Length = 339 Score = 101 bits (252), Expect = 4e-20, Method: Composition-based stats. Identities = 23/105 (21%), Positives = 49/105 (46%), Gaps = 1/105 (0%) Query: 52 DTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAG 111 ++ L + D E+ + V+ ++ + ++ T W R+ I I++ G Sbjct: 221 ESSLIPDLYKNEDDREYATNLFRKVVLNEERLSNMVDGK-TPNWDQDRIADIDLIIIKMG 279 Query: 112 VLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRK 156 + E + S+P I+EY+ I+ ++ FIN +LDK+ ++ Sbjct: 280 IAEFLYFPSIPTRATINEYLEISKEYSTPKSSIFINGILDKIVKE 324 >gi|166365064|ref|YP_001657337.1| transcription antitermination protein NusB [Microcystis aeruginosa NIES-843] gi|254772647|sp|B0JGZ3|NUSB_MICAN RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|166087437|dbj|BAG02145.1| N utilization substance protein B homolog [Microcystis aeruginosa NIES-843] Length = 217 Score = 101 bits (252), Expect = 4e-20, Method: Composition-based stats. Identities = 26/93 (27%), Positives = 45/93 (48%), Gaps = 2/93 (2%) Query: 66 LEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEV 125 E+ +I V R+ I+ ++ L W RL I IL+ V E++ +P +V Sbjct: 117 REYALELIGTVYRRRAEIEQELTGALV-DWQLHRLPRIDRDILQIAVAEMLY-LDLPQKV 174 Query: 126 IISEYVCIAHDFFYGDEPKFINAVLDKVSRKEE 158 I+E + +A + + +FIN VL +V+ K Sbjct: 175 AINEAIELAKRYSDDEGYRFINGVLRRVTNKLN 207 >gi|309804286|ref|ZP_07698363.1| transcription antitermination factor NusB [Lactobacillus iners LactinV 11V1-d] gi|312872493|ref|ZP_07732562.1| transcription antitermination factor NusB [Lactobacillus iners LEAF 2062A-h1] gi|315653399|ref|ZP_07906321.1| transcription antitermination protein NusB [Lactobacillus iners ATCC 55195] gi|308163689|gb|EFO65959.1| transcription antitermination factor NusB [Lactobacillus iners LactinV 11V1-d] gi|311092075|gb|EFQ50450.1| transcription antitermination factor NusB [Lactobacillus iners LEAF 2062A-h1] gi|315489324|gb|EFU78964.1| transcription antitermination protein NusB [Lactobacillus iners ATCC 55195] Length = 133 Score = 101 bits (252), Expect = 4e-20, Method: Composition-based stats. Identities = 33/134 (24%), Positives = 56/134 (41%), Gaps = 10/134 (7%) Query: 20 RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79 R+ A+QALY + + E+E +DV + D + I+ GVM Sbjct: 7 RVIAMQALY--------LADQVHEHEDVDAIKKKTMDVLDIKEFPDYAY--EILQGVMKE 56 Query: 80 KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139 K ID ++ L + W+ RL+ I IL G+ E+ + ++E + + +F Sbjct: 57 KSSIDANLTKYLKKGWTLERLNKIDLVILEVGLFEIQNSKVIKPVSALNEALNMCDEFSS 116 Query: 140 GDEPKFINAVLDKV 153 FIN +L Sbjct: 117 AKSKGFINGILANF 130 >gi|288928412|ref|ZP_06422259.1| NusB family protein [Prevotella sp. oral taxon 317 str. F0108] gi|288331246|gb|EFC69830.1| NusB family protein [Prevotella sp. oral taxon 317 str. F0108] Length = 347 Score = 101 bits (252), Expect = 4e-20, Method: Composition-based stats. Identities = 26/125 (20%), Positives = 53/125 (42%), Gaps = 3/125 (2%) Query: 31 DIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSC 90 +I+ + I ++ L D ++ R + + + +S Sbjct: 150 EIVDTFVLKTIKRFDPANKAKQELLPEYKD--EEDKDFARKLFRSTILNGEQYQRYMSEN 207 Query: 91 LTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVL 150 + W FSRL + I++ + E++ ++PV V I+EYV +A + +IN +L Sbjct: 208 -SRNWDFSRLAYMDVVIMQIAIAEMLNFPNIPVSVTINEYVELAKLYSTHRSGGYINGML 266 Query: 151 DKVSR 155 D ++R Sbjct: 267 DTIAR 271 >gi|22096363|sp|P74395|NUSB_SYNY3 RecName: Full=N utilization substance protein B homolog; Short=Protein nusB Length = 221 Score = 101 bits (252), Expect = 4e-20, Method: Composition-based stats. Identities = 33/105 (31%), Positives = 48/105 (45%), Gaps = 5/105 (4%) Query: 66 LEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEV 125 ++ +I V R+Q ID + + W SRL I ILR + EL VP +V Sbjct: 120 RKFALELIGTVCRRRQQIDEQLQEAMV-DWQLSRLAKIDQDILRLAIAELDY-LGVPQKV 177 Query: 126 IISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRSGCVSAITQ 170 I+E V +A + D +FIN VL +V+ E K G + Sbjct: 178 AINEAVELAKRYSGQDGHRFINGVLRRVT---EKKTDGAPVTPGE 219 >gi|259501554|ref|ZP_05744456.1| conserved hypothetical protein [Lactobacillus iners DSM 13335] gi|302191472|ref|ZP_07267726.1| transcription antitermination factor NusB [Lactobacillus iners AB-1] gi|309805466|ref|ZP_07699511.1| transcription antitermination factor NusB [Lactobacillus iners LactinV 09V1-c] gi|309808800|ref|ZP_07702685.1| transcription antitermination factor NusB [Lactobacillus iners LactinV 01V1-a] gi|309809548|ref|ZP_07703406.1| transcription antitermination factor NusB [Lactobacillus iners SPIN 2503V10-D] gi|312871882|ref|ZP_07731966.1| transcription antitermination factor NusB [Lactobacillus iners LEAF 3008A-a] gi|312874396|ref|ZP_07734426.1| transcription antitermination factor NusB [Lactobacillus iners LEAF 2052A-d] gi|312874533|ref|ZP_07734558.1| transcription antitermination factor NusB [Lactobacillus iners LEAF 2053A-b] gi|325911876|ref|ZP_08174280.1| transcription antitermination factor NusB [Lactobacillus iners UPII 143-D] gi|325913448|ref|ZP_08175814.1| transcription antitermination factor NusB [Lactobacillus iners UPII 60-B] gi|329919881|ref|ZP_08276819.1| transcription antitermination factor NusB [Lactobacillus iners SPIN 1401G] gi|259167072|gb|EEW51567.1| conserved hypothetical protein [Lactobacillus iners DSM 13335] gi|308165117|gb|EFO67355.1| transcription antitermination factor NusB [Lactobacillus iners LactinV 09V1-c] gi|308167926|gb|EFO70059.1| transcription antitermination factor NusB [Lactobacillus iners LactinV 01V1-a] gi|308170220|gb|EFO72255.1| transcription antitermination factor NusB [Lactobacillus iners SPIN 2503V10-D] gi|311089924|gb|EFQ48343.1| transcription antitermination factor NusB [Lactobacillus iners LEAF 2053A-b] gi|311090008|gb|EFQ48422.1| transcription antitermination factor NusB [Lactobacillus iners LEAF 2052A-d] gi|311092604|gb|EFQ50964.1| transcription antitermination factor NusB [Lactobacillus iners LEAF 3008A-a] gi|325476382|gb|EGC79544.1| transcription antitermination factor NusB [Lactobacillus iners UPII 143-D] gi|325477217|gb|EGC80363.1| transcription antitermination factor NusB [Lactobacillus iners UPII 60-B] gi|328936971|gb|EGG33401.1| transcription antitermination factor NusB [Lactobacillus iners SPIN 1401G] Length = 133 Score = 101 bits (252), Expect = 4e-20, Method: Composition-based stats. Identities = 33/134 (24%), Positives = 56/134 (41%), Gaps = 10/134 (7%) Query: 20 RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79 R+ A+QALY + + E+E +DV + D + I+ GVM Sbjct: 7 RVIAMQALY--------LADQVHEHEDVDAIKKKTMDVLDIKEFPDYAY--EILQGVMKE 56 Query: 80 KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139 K ID ++ L + W+ RL+ I IL G+ E+ + ++E + + +F Sbjct: 57 KSSIDANLAKYLKKGWTLERLNKIDLVILEVGLFEIQNSKVIKPVSALNEALNMCDEFSS 116 Query: 140 GDEPKFINAVLDKV 153 FIN +L Sbjct: 117 AKSKGFINGILANF 130 >gi|325104804|ref|YP_004274458.1| NusB antitermination factor [Pedobacter saltans DSM 12145] gi|324973652|gb|ADY52636.1| NusB antitermination factor [Pedobacter saltans DSM 12145] Length = 313 Score = 101 bits (252), Expect = 4e-20, Method: Composition-based stats. Identities = 35/148 (23%), Positives = 62/148 (41%), Gaps = 7/148 (4%) Query: 21 LAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHV------DLEWFRVIIH 74 A AL + I +++ E+D S + D E+ + H Sbjct: 158 ELAQNALEEKHINWQVDQDVLQAMVAKTLKNFDEVDGNSKLAQISSNWIEDREFIIDLFH 217 Query: 75 GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134 + +I+ T+ W R+ M+ I++ + ELI S+PV+V I+EY+ IA Sbjct: 218 KTLANDASCQEMIAGK-TKNWEADRIAMMDILIMKMALAELIYFSSIPVKVTINEYLEIA 276 Query: 135 HDFFYGDEPKFINAVLDKVSRKEEIKRS 162 +F FIN +LDK+ + + + Sbjct: 277 KEFSTPKSNVFINGILDKILGELQAQNK 304 >gi|288799718|ref|ZP_06405177.1| NusB family protein [Prevotella sp. oral taxon 299 str. F0039] gi|288332966|gb|EFC71445.1| NusB family protein [Prevotella sp. oral taxon 299 str. F0039] Length = 322 Score = 101 bits (252), Expect = 4e-20, Method: Composition-based stats. Identities = 27/125 (21%), Positives = 55/125 (44%), Gaps = 3/125 (2%) Query: 31 DIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSC 90 +++ + I +++ D + + D E+ R + + +S Sbjct: 175 EVVDTFVIKTIKKFDEAN--KDQQELLPEYRDVEDKEFARKLFRATILNADQYQSYMSET 232 Query: 91 LTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVL 150 + W FSRL + I++ + E++ S+PV V I+EYV +A + +IN +L Sbjct: 233 -SRNWDFSRLAYMDVVIMQIAIAEMLTFPSIPVSVTINEYVNLAKLYSTSRSGGYINGML 291 Query: 151 DKVSR 155 D ++R Sbjct: 292 DAIAR 296 >gi|307150111|ref|YP_003885495.1| NusB antitermination factor [Cyanothece sp. PCC 7822] gi|306980339|gb|ADN12220.1| NusB antitermination factor [Cyanothece sp. PCC 7822] Length = 212 Score = 101 bits (252), Expect = 4e-20, Method: Composition-based stats. Identities = 30/97 (30%), Positives = 51/97 (52%), Gaps = 2/97 (2%) Query: 66 LEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEV 125 E+ II V R++ I+ +++ + W SRL I ILR V E++ VP +V Sbjct: 117 REYAVEIIGTVFRRQKEIEQQLATGMV-DWQLSRLPKIDRDILRIAVAEMLF-LEVPQKV 174 Query: 126 IISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRS 162 I+E V IA + + +FIN VL +V+ + +++ Sbjct: 175 AINEAVEIAKRYSDEEGYRFINGVLRRVTEQLKLEAK 211 >gi|282891352|ref|ZP_06299854.1| hypothetical protein pah_c050o153 [Parachlamydia acanthamoebae str. Hall's coccus] gi|281498849|gb|EFB41166.1| hypothetical protein pah_c050o153 [Parachlamydia acanthamoebae str. Hall's coccus] Length = 187 Score = 101 bits (252), Expect = 4e-20, Method: Composition-based stats. Identities = 33/142 (23%), Positives = 67/142 (47%), Gaps = 14/142 (9%) Query: 20 RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEW-FRVIIHGVMD 78 R LY D S E++ EL ++ + + + + V++ Sbjct: 9 REVVFVLLYSQDCGRVSEQELV------------ELVMKELAVTKKTAYSALEKVELVLE 56 Query: 79 RKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFF 138 +K ID LI+ + ++ F R+ + ++LR G+ E++ S+P +V I+E + ++ F Sbjct: 57 KKAEIDDLIA-NTSREYRFERIQTVEKNVLRLGIYEMLFDDSIPPKVAIAEAIRLSRKFS 115 Query: 139 YGDEPKFINAVLDKVSRKEEIK 160 + F+NA+LD + + +E K Sbjct: 116 TPESATFVNALLDHIYQTKEGK 137 >gi|17229252|ref|NP_485800.1| transcription antitermination protein NusB [Nostoc sp. PCC 7120] gi|22095953|sp|Q8YW56|NUSB_ANASP RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|17130850|dbj|BAB73459.1| transcription termination factor [Nostoc sp. PCC 7120] Length = 211 Score = 101 bits (252), Expect = 4e-20, Method: Composition-based stats. Identities = 31/115 (26%), Positives = 54/115 (46%), Gaps = 5/115 (4%) Query: 48 RFCADTELDVESVYLHVDLE---WFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMIL 104 + A E + D E + ++ + + + ID I+S L W +RL I Sbjct: 96 QLGASVEFPELIQLANQDKEVGRYAIKLVKIINEERSVIDEQITSALV-DWQVTRLAQID 154 Query: 105 CSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEI 159 ILR V E++ ++P V I+E V +A + + +FIN VL +VS +++ Sbjct: 155 RDILRIAVAEMMFF-NLPNSVAINEAVELAKRYSGDEGHRFINGVLRRVSDQKKA 208 >gi|329955547|ref|ZP_08296455.1| transcription antitermination factor NusB [Bacteroides clarus YIT 12056] gi|328525950|gb|EGF52974.1| transcription antitermination factor NusB [Bacteroides clarus YIT 12056] Length = 308 Score = 100 bits (251), Expect = 5e-20, Method: Composition-based stats. Identities = 32/147 (21%), Positives = 62/147 (42%), Gaps = 10/147 (6%) Query: 25 QALYQI----DIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRK 80 Q+LY +I+ + I ++ + + D E+ R + + Sbjct: 167 QSLY-WNDDKEIVDTFVLKTIKRFDEKNGA--NQALLPEFKDDEDQEFARRLFRRTILNC 223 Query: 81 QHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYG 140 + LIS T W R+ + I++ + E++ ++PV V ++EYV IA + Sbjct: 224 DYYRHLISEN-TRNWDLDRVAFMDVVIMQCALAEILSFPNIPVSVSLNEYVDIAKVYSTT 282 Query: 141 DEPKFINAVLDKVSRKEEIKRSGCVSA 167 F+N LD + + E+K+ G +S Sbjct: 283 KSGSFVNGTLDGIVK--ELKKEGKLSK 307 >gi|19704937|ref|NP_602432.1| transcription antitermination protein NusB [Fusobacterium nucleatum subsp. nucleatum ATCC 25586] gi|296329192|ref|ZP_06871693.1| transcription antitermination factor NusB [Fusobacterium nucleatum subsp. nucleatum ATCC 23726] gi|22095941|sp|Q8RII1|NUSB_FUSNN RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|19712836|gb|AAL93731.1| N utilization substance protein B [Fusobacterium nucleatum subsp. nucleatum ATCC 25586] gi|296153548|gb|EFG94365.1| transcription antitermination factor NusB [Fusobacterium nucleatum subsp. nucleatum ATCC 23726] Length = 153 Score = 100 bits (251), Expect = 5e-20, Method: Composition-based stats. Identities = 27/158 (17%), Positives = 72/158 (45%), Gaps = 5/158 (3%) Query: 1 MTIQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESV 60 M +++ K +AR + ++ ++ ++ E+ ++ Y ++ ++ Sbjct: 1 MNKNFEEQEKKAKGGVRLAREEVFKLVFGVEATESASEELKQAFDIYLQNSE---ELIGT 57 Query: 61 YLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHS 120 LE+ + I G+ +I +I T+ W++ R+ ++ ++L E I + Sbjct: 58 LNENQLEFLKSSIDGIAKNYDNIKDIIKKN-TQNWAYERIGVVERALLIVATYEFIF-KN 115 Query: 121 VPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEE 158 P+EVI +E + +A ++ +F+N +L + + ++ Sbjct: 116 APIEVIANEIIELAKEYGNEKSYEFVNGILANIEKSKK 153 >gi|317133047|ref|YP_004092361.1| sun protein [Ethanoligenens harbinense YUAN-3] gi|315471026|gb|ADU27630.1| sun protein [Ethanoligenens harbinense YUAN-3] Length = 436 Score = 100 bits (251), Expect = 5e-20, Method: Composition-based stats. Identities = 30/139 (21%), Positives = 57/139 (41%), Gaps = 13/139 (9%) Query: 18 IARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVM 77 AR A+ L +++ + D EL+ ++ D +++GV+ Sbjct: 3 QAREVALSVLLRMEQDDSYS----------NLLLDAELE-KAALSRRDAALATALVYGVV 51 Query: 78 DRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDF 137 R+ +D L+ + ++ +L +ILR G +L +P ++E V +A Sbjct: 52 ARRITLDYLLETA--SGRPVQKMQPVLRAILRLGAYQLCYLDKIPARAAVNEAVQLAKKR 109 Query: 138 FYGDEPKFINAVLDKVSRK 156 G F+N VL + RK Sbjct: 110 HLGHASGFVNGVLRGLDRK 128 >gi|260912453|ref|ZP_05918990.1| N utilization substance protein NusB [Prevotella sp. oral taxon 472 str. F0295] gi|260633425|gb|EEX51578.1| N utilization substance protein NusB [Prevotella sp. oral taxon 472 str. F0295] Length = 372 Score = 100 bits (251), Expect = 6e-20, Method: Composition-based stats. Identities = 26/125 (20%), Positives = 52/125 (41%), Gaps = 3/125 (2%) Query: 31 DIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSC 90 +I+ + I ++ L D ++ R + + +S Sbjct: 175 EIVDTFVLKTIKRFDPANKAKQELLPEYKD--EEDKDFARKLFRSTILNADQYQRYMSEN 232 Query: 91 LTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVL 150 + W FSRL + I++ + E++ ++PV V I+EYV +A + +IN +L Sbjct: 233 -SRNWDFSRLAYMDVVIMQIAIAEMLTFPNIPVSVTINEYVELAKLYSTHRSGGYINGML 291 Query: 151 DKVSR 155 D ++R Sbjct: 292 DTIAR 296 >gi|295425233|ref|ZP_06817936.1| transcription antitermination factor NusB [Lactobacillus amylolyticus DSM 11664] gi|295065009|gb|EFG55914.1| transcription antitermination factor NusB [Lactobacillus amylolyticus DSM 11664] Length = 131 Score = 100 bits (251), Expect = 6e-20, Method: Composition-based stats. Identities = 29/139 (20%), Positives = 59/139 (42%), Gaps = 11/139 (7%) Query: 17 GIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGV 76 +R A+QA++ + +E E VE + L + + +I GV Sbjct: 4 HESRKVAMQAIF---LANQDPELTTAEVEVKT--------VEMLDLEQLSAYSKTLIEGV 52 Query: 77 MDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHD 136 M ++ + I++ L + W R++ I +IL + E+ + + + ++E + + D Sbjct: 53 MLKRDELKEAIAAHLKKGWRIERVNPITIAILEIALYEIKDSAEIEPKAAVNEALNLCDD 112 Query: 137 FFYGDEPKFINAVLDKVSR 155 F D FIN +L + Sbjct: 113 FTDPDAKPFINGILANFVK 131 >gi|218441932|ref|YP_002380261.1| transcription antitermination protein NusB [Cyanothece sp. PCC 7424] gi|254772630|sp|B7KFR8|NUSB_CYAP7 RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|218174660|gb|ACK73393.1| NusB antitermination factor [Cyanothece sp. PCC 7424] Length = 212 Score = 100 bits (251), Expect = 6e-20, Method: Composition-based stats. Identities = 30/95 (31%), Positives = 49/95 (51%), Gaps = 2/95 (2%) Query: 66 LEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEV 125 E+ II V R+ I+ +++ + W +RL I ILR V E+I VP +V Sbjct: 117 REYALEIIQTVYRRQTEIEQELATVMV-DWQLNRLPKIDRDILRIAVAEMIF-LEVPQKV 174 Query: 126 IISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIK 160 I+E V IA + + +FIN VL +V+ + + + Sbjct: 175 AINEAVEIAKRYSDEEGYRFINGVLRRVTERLKTE 209 >gi|319901555|ref|YP_004161283.1| NusB antitermination factor [Bacteroides helcogenes P 36-108] gi|319416586|gb|ADV43697.1| NusB antitermination factor [Bacteroides helcogenes P 36-108] Length = 308 Score = 100 bits (250), Expect = 6e-20, Method: Composition-based stats. Identities = 35/147 (23%), Positives = 64/147 (43%), Gaps = 10/147 (6%) Query: 25 QALYQI----DIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRK 80 Q+LY +I+ + I +E A+ EL E D E+ R + + Sbjct: 167 QSLY-WNDDKEIVDTFVLKTIKRFEEKN-GANQELLPE-FKDDEDQEFARRLFRRTILNC 223 Query: 81 QHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYG 140 + LIS T W R+ + I++ + E++ ++PV V ++EYV IA + Sbjct: 224 DYYRHLISEN-TRNWDLDRVAFMDVIIMQCALAEILSFPNIPVSVSLNEYVDIAKVYSTA 282 Query: 141 DEPKFINAVLDKVSRKEEIKRSGCVSA 167 F+N LD + ++K+ G ++ Sbjct: 283 KSGSFVNGTLDGIV--NQLKKEGKLTK 307 >gi|238019375|ref|ZP_04599801.1| hypothetical protein VEIDISOL_01239 [Veillonella dispar ATCC 17748] gi|237864074|gb|EEP65364.1| hypothetical protein VEIDISOL_01239 [Veillonella dispar ATCC 17748] Length = 451 Score = 100 bits (250), Expect = 6e-20, Method: Composition-based stats. Identities = 39/148 (26%), Positives = 67/148 (45%), Gaps = 14/148 (9%) Query: 20 RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79 RL AV+AL I+ G + EY +D +D +F +++GV+ R Sbjct: 13 RLLAVKALSDINRNGAYANIKLQEYLQKYHLSD-----------LDRRFFTELVYGVIRR 61 Query: 80 KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139 K ++D +I +L ++ ILR G+ ++I VP ++E V +A + Sbjct: 62 KNYLDAIIIHFAKR--PLKKLSSMVVEILRLGIYQIIYMDKVPESAAVNESVKLAKNLTR 119 Query: 140 GDEPKFINAVLDKVSRKEEIKRSGCVSA 167 G F+NAVL V R+ + G ++ Sbjct: 120 GLS-GFVNAVLRSVLRESDSISIGELAK 146 >gi|332293207|ref|YP_004431816.1| NusB antitermination factor [Krokinobacter diaphorus 4H-3-7-5] gi|332171293|gb|AEE20548.1| NusB antitermination factor [Krokinobacter diaphorus 4H-3-7-5] Length = 314 Score = 100 bits (250), Expect = 6e-20, Method: Composition-based stats. Identities = 23/99 (23%), Positives = 51/99 (51%), Gaps = 1/99 (1%) Query: 63 HVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVP 122 DL + ++ + ++ + IS T W R+ + +++ + E ++ ++P Sbjct: 207 DEDLLFGTTLLEKTIANEEFLSSEISEN-TPNWDKERIADVDMVLIKMALCEFLKFPTIP 265 Query: 123 VEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKR 161 V+V I+EY+ IA ++ FIN +LDK+ ++ E ++ Sbjct: 266 VKVTINEYLEIAKEYSTPKSSIFINGILDKLVKQYESEK 304 >gi|255692806|ref|ZP_05416481.1| NusB family protein [Bacteroides finegoldii DSM 17565] gi|260621435|gb|EEX44306.1| NusB family protein [Bacteroides finegoldii DSM 17565] Length = 308 Score = 100 bits (250), Expect = 6e-20, Method: Composition-based stats. Identities = 35/147 (23%), Positives = 66/147 (44%), Gaps = 10/147 (6%) Query: 25 QALYQI----DIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRK 80 Q+LY +I+ + I ++ + A+ EL E D E+ R + + Sbjct: 167 QSLY-WNDDKEIVDTFVLKTIKRFDEKK-GANQELLPE-FKDDEDQEFARRLFRRTILNS 223 Query: 81 QHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYG 140 + LIS T+ W R+ + I++ + E++ ++PV V ++EYV IA + Sbjct: 224 DYYRHLISEN-TKNWDLDRIAFMDIIIMQTALAEILSFPNIPVSVSLNEYVEIAKLYSTS 282 Query: 141 DEPKFINAVLDKVSRKEEIKRSGCVSA 167 FIN LD + ++K+ G ++ Sbjct: 283 KSGSFINGTLDGIV--NQLKKEGKLTK 307 >gi|260892752|ref|YP_003238849.1| sun protein [Ammonifex degensii KC4] gi|260864893|gb|ACX51999.1| sun protein [Ammonifex degensii KC4] Length = 452 Score = 100 bits (250), Expect = 7e-20, Method: Composition-based stats. Identities = 29/140 (20%), Positives = 58/140 (41%), Gaps = 13/140 (9%) Query: 19 ARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMD 78 AR A++ LY +D+ G Y A T + + + + +G + Sbjct: 4 ARELALKVLYAVDVEG-----------AYGNLALTSVMGKYRPQGPERSLLTELCYGTLR 52 Query: 79 RKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFF 138 R ID +++ + + + +ILR V +++ +P +E V +A + Sbjct: 53 RLNTIDWVLAKFIKR--PLCEQNPWIRNILRLAVYQILYLDRIPPAAATNEAVELAKKYA 110 Query: 139 YGDEPKFINAVLDKVSRKEE 158 F+NAVL +V R+++ Sbjct: 111 PPSMAGFVNAVLRRVVREKD 130 >gi|313893390|ref|ZP_07826962.1| ribosomal RNA small subunit methyltransferase B [Veillonella sp. oral taxon 158 str. F0412] gi|313442031|gb|EFR60451.1| ribosomal RNA small subunit methyltransferase B [Veillonella sp. oral taxon 158 str. F0412] Length = 451 Score = 100 bits (250), Expect = 7e-20, Method: Composition-based stats. Identities = 39/148 (26%), Positives = 66/148 (44%), Gaps = 14/148 (9%) Query: 20 RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79 RL AV+AL I+ G + EY +D +D +F +++GV+ R Sbjct: 13 RLLAVKALSDINRNGAYANIKLQEYLQKYHLSD-----------LDRRFFTELVYGVIRR 61 Query: 80 KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139 K ++D +I +L ++ ILR G+ ++I VP ++E V +A Sbjct: 62 KNYLDAIIVHFAKR--PLKKLSSMVVEILRLGIYQIIYMDKVPESAAVNESVKLAKKLTR 119 Query: 140 GDEPKFINAVLDKVSRKEEIKRSGCVSA 167 G F+NAVL V R+ + G ++ Sbjct: 120 GLS-GFVNAVLRSVLRECDSISIGELAK 146 >gi|315608439|ref|ZP_07883427.1| NusB family protein [Prevotella buccae ATCC 33574] gi|315249899|gb|EFU29900.1| NusB family protein [Prevotella buccae ATCC 33574] Length = 345 Score = 100 bits (250), Expect = 7e-20, Method: Composition-based stats. Identities = 24/98 (24%), Positives = 43/98 (43%), Gaps = 1/98 (1%) Query: 58 ESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIE 117 D E+ R + + +S + W FSRL + I++ + E++ Sbjct: 200 PEYKDEEDREFARKLFRATILNADQYQRYMSDA-SRNWDFSRLAYMDVVIMQIAIAEMLT 258 Query: 118 CHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSR 155 +PV V I+EYV +A + +IN +LD ++R Sbjct: 259 FPGIPVSVTINEYVNLAKVYSTPRSGGYINGMLDNIAR 296 >gi|288926808|ref|ZP_06420717.1| NusB family protein [Prevotella buccae D17] gi|288336437|gb|EFC74814.1| NusB family protein [Prevotella buccae D17] Length = 320 Score = 100 bits (250), Expect = 7e-20, Method: Composition-based stats. Identities = 24/98 (24%), Positives = 43/98 (43%), Gaps = 1/98 (1%) Query: 58 ESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIE 117 D E+ R + + +S + W FSRL + I++ + E++ Sbjct: 175 PEYKDEEDREFARKLFRATILNADQYQRYMSDA-SRNWDFSRLAYMDVVIMQIAIAEMLT 233 Query: 118 CHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSR 155 +PV V I+EYV +A + +IN +LD ++R Sbjct: 234 FPGIPVSVTINEYVNLAKVYSTPRSGGYINGMLDNIAR 271 >gi|319951926|ref|YP_004163193.1| nusb antitermination factor [Cellulophaga algicola DSM 14237] gi|319420586|gb|ADV47695.1| NusB antitermination factor [Cellulophaga algicola DSM 14237] Length = 315 Score = 100 bits (249), Expect = 8e-20, Method: Composition-based stats. Identities = 26/106 (24%), Positives = 53/106 (50%), Gaps = 3/106 (2%) Query: 63 HVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVP 122 D+E+ + ++ + + + + I T W R+ I +L+ + EL+ S+P Sbjct: 208 QEDVEFSKRLLSKTLLQNEKLVKEIEGK-TPNWDKDRIADIDAILLKMAIAELLNFPSIP 266 Query: 123 VEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRSGCVSAI 168 V I+EY+ +A ++ FIN +LDK+ + E ++ G ++ I Sbjct: 267 ERVTINEYLELAKEYSTPKSSTFINGILDKLVK--EYQQEGKLNKI 310 >gi|172036538|ref|YP_001803039.1| transcription antitermination protein NusB [Cyanothece sp. ATCC 51142] gi|254772628|sp|B1WXY6|NUSB_CYAA5 RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|171697992|gb|ACB50973.1| transcription termination factor, N utilization substance protein B [Cyanothece sp. ATCC 51142] Length = 209 Score = 100 bits (249), Expect = 8e-20, Method: Composition-based stats. Identities = 28/88 (31%), Positives = 44/88 (50%), Gaps = 2/88 (2%) Query: 66 LEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEV 125 E+ +I + R++ ID + + L + W RL I ILR V E++ VP +V Sbjct: 117 REYAIELIGTINRRRKEIDEQLEAVL-KDWQLKRLAKIDQDILRLAVAEILF-LDVPEKV 174 Query: 126 IISEYVCIAHDFFYGDEPKFINAVLDKV 153 I+E V +A + D +FIN VL + Sbjct: 175 SINEAVELAKRYSDDDGYRFINGVLRRF 202 >gi|332705392|ref|ZP_08425470.1| transcription antitermination factor NusB [Lyngbya majuscula 3L] gi|332355752|gb|EGJ35214.1| transcription antitermination factor NusB [Lyngbya majuscula 3L] Length = 209 Score = 100 bits (249), Expect = 9e-20, Method: Composition-based stats. Identities = 27/87 (31%), Positives = 41/87 (47%), Gaps = 2/87 (2%) Query: 66 LEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEV 125 + II V R+ ID +++ L + W RL I ILR V E+ +P V Sbjct: 113 RSYTLEIIKAVSRRQLEIDQMLNQSL-KDWQLKRLPRIDRDILRMAVAEIAF-LGIPDRV 170 Query: 126 IISEYVCIAHDFFYGDEPKFINAVLDK 152 I+E V +A + + +FIN VL + Sbjct: 171 AINEAVELAKRYSDEEGHRFINGVLRR 197 >gi|187734931|ref|YP_001877043.1| NusB antitermination factor [Akkermansia muciniphila ATCC BAA-835] gi|187424983|gb|ACD04262.1| NusB antitermination factor [Akkermansia muciniphila ATCC BAA-835] Length = 294 Score = 100 bits (249), Expect = 9e-20, Method: Composition-based stats. Identities = 30/104 (28%), Positives = 52/104 (50%), Gaps = 6/104 (5%) Query: 52 DTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAG 111 + D E +Y + + ++ R+ +D I S L E +S R+ I +ILR G Sbjct: 192 EAGRDAEELYREA-----KTLGEDILRRRDGLDAAIDSTL-ENYSPERVSAIDRAILRLG 245 Query: 112 VLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSR 155 EL+ +P ++ISE + ++ F + P+FIN VL +S+ Sbjct: 246 AYELLHRKDLPAPIVISEAIRLSERFSSAESPRFINGVLAGISK 289 >gi|326801392|ref|YP_004319211.1| NusB antitermination factor [Sphingobacterium sp. 21] gi|326552156|gb|ADZ80541.1| NusB antitermination factor [Sphingobacterium sp. 21] Length = 315 Score = 99.8 bits (248), Expect = 1e-19, Method: Composition-based stats. Identities = 28/103 (27%), Positives = 51/103 (49%), Gaps = 3/103 (2%) Query: 65 DLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVE 124 D E+ + + + IS T+ W R+ +I ++R + EL+ S+PV+ Sbjct: 209 DKEFIVDLFRLTTRHGEDYQIYISGK-TKNWEADRIALIDTLLMRMAITELLNFSSIPVK 267 Query: 125 VIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRSGCVSA 167 V I+EY+ I+ +F FIN +LDK+ E+++ G + Sbjct: 268 VTINEYIEISKEFSTPKSNSFINGILDKIL--IELQKEGKIRK 308 >gi|312129526|ref|YP_003996866.1| nusb antitermination factor [Leadbetterella byssophila DSM 17132] gi|311906072|gb|ADQ16513.1| NusB antitermination factor [Leadbetterella byssophila DSM 17132] Length = 371 Score = 99.8 bits (248), Expect = 1e-19, Method: Composition-based stats. Identities = 29/136 (21%), Positives = 57/136 (41%), Gaps = 8/136 (5%) Query: 38 TEIISEYETYRFCADTELDVESVYLHVD-----LEWFRVIIHGVMDRKQHIDLLISSCLT 92 EI+ + F E +V + D ++ R + + + + I L Sbjct: 231 KEILRTMLFHSFANFVEDEVVVIEKLDDQWEDTKDFLRTLFKETAVKDEELLEHILPHL- 289 Query: 93 EKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDK 152 + W R+ +L+ V EL S+PV+V I+E + IA ++ FIN +LD Sbjct: 290 KNWDLERIIGTDLILLKMAVAELTTFPSIPVKVTINEIIEIAKNYSSEKSKVFINGLLDS 349 Query: 153 VSRKEEIKRSGCVSAI 168 + + ++++ G + Sbjct: 350 ICK--DLQQKGLIKKT 363 >gi|300726454|ref|ZP_07059900.1| NusB family protein [Prevotella bryantii B14] gi|299776182|gb|EFI72746.1| NusB family protein [Prevotella bryantii B14] Length = 320 Score = 99.8 bits (248), Expect = 1e-19, Method: Composition-based stats. Identities = 31/125 (24%), Positives = 55/125 (44%), Gaps = 3/125 (2%) Query: 31 DIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSC 90 +I+ + I +E AD EL E DL++ R + + +S Sbjct: 150 EIVDTFVIKTIKRFEQANK-ADQELLPE-YKDEEDLDFARKLFRSTILNADQYQRYMSDA 207 Query: 91 LTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVL 150 + W FSRL + I++ + EL ++P V I+EYV +A + ++N +L Sbjct: 208 -SRNWDFSRLAYMDVVIMQIAIAELCTFPNIPASVTINEYVNLAKLYSTPHSGSYVNGML 266 Query: 151 DKVSR 155 D ++R Sbjct: 267 DGIAR 271 >gi|303232029|ref|ZP_07318732.1| ribosomal RNA small subunit methyltransferase B [Veillonella atypica ACS-049-V-Sch6] gi|302513135|gb|EFL55174.1| ribosomal RNA small subunit methyltransferase B [Veillonella atypica ACS-049-V-Sch6] Length = 452 Score = 99.8 bits (248), Expect = 1e-19, Method: Composition-based stats. Identities = 36/139 (25%), Positives = 66/139 (47%), Gaps = 14/139 (10%) Query: 20 RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79 RL AV+AL I+ G ++ +Y + +D +D +F +++GV+ R Sbjct: 14 RLLAVKALSDINRKGAYANIVLQDYISKYNLSD-----------LDRRFFTELVYGVVRR 62 Query: 80 KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139 + ++D +I +L ++ ILR GV ++I VP ++E V +A Sbjct: 63 RNYLDAIIVHFAKR--PIKKLSSMVVEILRLGVYQIIYMDKVPESAAVNESVKLAKKLTR 120 Query: 140 GDEPKFINAVLDKVSRKEE 158 G F+NA+L V R+++ Sbjct: 121 GLS-GFVNAILRSVIREQD 138 >gi|227540276|ref|ZP_03970325.1| N utilization substance protein [Sphingobacterium spiritivorum ATCC 33300] gi|227239812|gb|EEI89827.1| N utilization substance protein [Sphingobacterium spiritivorum ATCC 33300] Length = 300 Score = 99.8 bits (248), Expect = 1e-19, Method: Composition-based stats. Identities = 26/103 (25%), Positives = 52/103 (50%), Gaps = 3/103 (2%) Query: 65 DLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVE 124 D E+ ++ + + LI++ T+ W R+ ++ ++R + ELI S+PV+ Sbjct: 194 DREFVLDLLANTIRYGEEYQSLIAAK-TKNWEADRIALLDTILMRMAICELINFSSIPVK 252 Query: 125 VIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRSGCVSA 167 V I+EY+ ++ F FIN +LDK+ ++ + G + Sbjct: 253 VTINEYIELSKVFSTLKSNTFINGILDKIL--ADLNQQGRIRK 293 >gi|75906501|ref|YP_320797.1| transcription antitermination protein NusB [Anabaena variabilis ATCC 29413] gi|119372276|sp|Q3MGI4|NUSB_ANAVT RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|75700226|gb|ABA19902.1| NusB antitermination factor [Anabaena variabilis ATCC 29413] Length = 211 Score = 99.4 bits (247), Expect = 1e-19, Method: Composition-based stats. Identities = 31/115 (26%), Positives = 54/115 (46%), Gaps = 5/115 (4%) Query: 48 RFCADTELDVESVYLHVDLE---WFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMIL 104 + A E + D E + ++ + + + ID I+S L W +RL I Sbjct: 96 QLGASVEFPELIQLANQDKEVGRYAIKLVKIINEERGMIDEQITSALV-DWQVTRLAQID 154 Query: 105 CSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEI 159 ILR V E++ ++P V I+E V +A + + +FIN VL +VS +++ Sbjct: 155 RDILRIAVAEMMF-LNLPNSVAINEAVELAKRYSGDEGHRFINGVLRRVSDQKKA 208 >gi|167762592|ref|ZP_02434719.1| hypothetical protein BACSTE_00948 [Bacteroides stercoris ATCC 43183] gi|167699698|gb|EDS16277.1| hypothetical protein BACSTE_00948 [Bacteroides stercoris ATCC 43183] Length = 308 Score = 99.4 bits (247), Expect = 1e-19, Method: Composition-based stats. Identities = 32/147 (21%), Positives = 62/147 (42%), Gaps = 10/147 (6%) Query: 25 QALYQI----DIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRK 80 Q+LY +I+ + I ++ + + D E+ R + + Sbjct: 167 QSLY-WNDDKEIVDTFVLKTIKRFDEKNGA--NQPLLPEFKDDEDQEFARRLFRRAILNC 223 Query: 81 QHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYG 140 + LIS T W R+ + I++ + E++ ++PV V ++EYV IA + Sbjct: 224 DYYRHLISEN-TRNWDLDRVAFMDVVIMQCALAEILSFPNIPVSVSLNEYVDIAKVYSTA 282 Query: 141 DEPKFINAVLDKVSRKEEIKRSGCVSA 167 F+N LD + + E+K+ G +S Sbjct: 283 KSGSFVNGTLDGIVK--ELKKEGKLSK 307 >gi|300771100|ref|ZP_07080976.1| NusB family protein [Sphingobacterium spiritivorum ATCC 33861] gi|300761770|gb|EFK58590.1| NusB family protein [Sphingobacterium spiritivorum ATCC 33861] Length = 304 Score = 99.4 bits (247), Expect = 1e-19, Method: Composition-based stats. Identities = 26/103 (25%), Positives = 52/103 (50%), Gaps = 3/103 (2%) Query: 65 DLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVE 124 D E+ ++ + + LI++ T+ W R+ ++ ++R + ELI S+PV+ Sbjct: 198 DREFVLDLLANTIRYGEEYQSLIAAK-TKNWEADRIALLDTILMRMAICELINFSSIPVK 256 Query: 125 VIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRSGCVSA 167 V I+EY+ ++ F FIN +LDK+ ++ + G + Sbjct: 257 VTINEYIELSKVFSTLKSNTFINGILDKIL--ADLNQQGRIRK 297 >gi|323705503|ref|ZP_08117078.1| sun protein [Thermoanaerobacterium xylanolyticum LX-11] gi|323535405|gb|EGB25181.1| sun protein [Thermoanaerobacterium xylanolyticum LX-11] Length = 447 Score = 99.4 bits (247), Expect = 1e-19, Method: Composition-based stats. Identities = 36/137 (26%), Positives = 63/137 (45%), Gaps = 13/137 (9%) Query: 20 RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79 R A + LY I I + ++++Y D +D + + I+ G ++R Sbjct: 4 RNTAFKILYDIIIKKGYSNIVLNKYLNNNELRD-----------IDKSFIKEIVFGTIER 52 Query: 80 KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139 KQ +D +I C ++ ++D + IL G+ ++I VP ISE V +A ++ Sbjct: 53 KQTLDQIIDHCSSKG--SKKIDNKILIILEMGLYQIIYMDKVPQYAAISEAVNLAKEYAG 110 Query: 140 GDEPKFINAVLDKVSRK 156 KF+NAVL +R Sbjct: 111 IHASKFVNAVLRNYARN 127 >gi|255534372|ref|YP_003094743.1| Transcription termination protein NusB [Flavobacteriaceae bacterium 3519-10] gi|255340568|gb|ACU06681.1| Transcription termination protein NusB [Flavobacteriaceae bacterium 3519-10] Length = 301 Score = 99.4 bits (247), Expect = 2e-19, Method: Composition-based stats. Identities = 24/94 (25%), Positives = 43/94 (45%), Gaps = 1/94 (1%) Query: 63 HVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVP 122 D E+ R ++ ++ + + + L E W R+ ++ IL + EL P Sbjct: 205 EDDREFARRLLKDTLNHWEESEKKLVGRL-ENWDIERVSLVDKIILVTAITELDYFPLTP 263 Query: 123 VEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRK 156 V+I+EY+ I+ F FIN +LDK ++ Sbjct: 264 ARVVINEYIEISKVFSTDRSNIFINGILDKYTKD 297 >gi|88802775|ref|ZP_01118302.1| putative N utilization substance protein [Polaribacter irgensii 23-P] gi|88781633|gb|EAR12811.1| putative N utilization substance protein [Polaribacter irgensii 23-P] Length = 312 Score = 99.4 bits (247), Expect = 2e-19, Method: Composition-based stats. Identities = 23/94 (24%), Positives = 47/94 (50%), Gaps = 1/94 (1%) Query: 63 HVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVP 122 D E+ + + ++ + +I+ T W R+ I +++ + E + S+P Sbjct: 205 KDDEEFVSKLFRKTVLKQADYEPMIAEK-TPNWESDRIAGIDMILIKMAIAEFLNFSSIP 263 Query: 123 VEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRK 156 +V I+EY+ I+ D+ FIN VLDK++++ Sbjct: 264 TKVTINEYIEISKDYSTSRSSFFINGVLDKIAKE 297 >gi|163787968|ref|ZP_02182414.1| putative N utilization substance protein [Flavobacteriales bacterium ALC-1] gi|159876288|gb|EDP70346.1| putative N utilization substance protein [Flavobacteriales bacterium ALC-1] Length = 303 Score = 99.4 bits (247), Expect = 2e-19, Method: Composition-based stats. Identities = 26/98 (26%), Positives = 45/98 (45%), Gaps = 1/98 (1%) Query: 63 HVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVP 122 DL + + + + IS+ T W RL + +L+ + E + S+P Sbjct: 196 EDDLVYAKDLFKKTLLNGSKFSEEISAK-TTNWDSERLASLDGVLLKMALCEFQKFSSIP 254 Query: 123 VEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIK 160 +V I+EY+ IA + FIN +LDKV ++ + K Sbjct: 255 YKVTINEYLEIAKAYSTPKSSLFINGILDKVVKEYQSK 292 >gi|51892487|ref|YP_075178.1| hypothetical protein STH1349 [Symbiobacterium thermophilum IAM 14863] gi|51856176|dbj|BAD40334.1| conserved hypothetical protein [Symbiobacterium thermophilum IAM 14863] Length = 459 Score = 99.0 bits (246), Expect = 2e-19, Method: Composition-based stats. Identities = 27/140 (19%), Positives = 53/140 (37%), Gaps = 13/140 (9%) Query: 17 GIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGV 76 R AA++ALY +DI + + + E + +GV Sbjct: 10 RTGREAALRALYDVDIKAAYANLALDHHLSRSQLDGRE-----------RALATELAYGV 58 Query: 77 MDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHD 136 R+ +D I ++D + +ILR +++ +P + + V +A Sbjct: 59 TRRRATLDWAIGQVAAR--PLEKMDPWVRNILREAAYQILYMDRIPPAAAVDQAVELARQ 116 Query: 137 FFYGDEPKFINAVLDKVSRK 156 + + KF+N VL + R+ Sbjct: 117 YGHEGVAKFVNGVLRNLIRR 136 >gi|149279327|ref|ZP_01885458.1| putative N utilization substance protein [Pedobacter sp. BAL39] gi|149229853|gb|EDM35241.1| putative N utilization substance protein [Pedobacter sp. BAL39] Length = 297 Score = 99.0 bits (246), Expect = 2e-19, Method: Composition-based stats. Identities = 27/138 (19%), Positives = 63/138 (45%), Gaps = 4/138 (2%) Query: 31 DIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSC 90 +++ + + + + L S D ++ + + + + LI+ Sbjct: 157 EVMQGMVAKTLKNFVNEDPFKNK-LTPISQDWEEDRKFVEDLFAYTLRKDKEYQELIADR 215 Query: 91 LTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVL 150 T+ W R+ ++ +++ + EL+ S+PV+V I+EY+ ++ D+ FIN +L Sbjct: 216 -TKNWESERIALMDTILMKMAICELMNFPSIPVKVTINEYLDLSKDYSTPKSNSFINGIL 274 Query: 151 DKVSRKEEIKRSGCVSAI 168 DK+ ++KR+ + I Sbjct: 275 DKIL--GDLKRTDSIHKI 290 >gi|329961415|ref|ZP_08299538.1| transcription antitermination factor NusB [Bacteroides fluxus YIT 12057] gi|328531892|gb|EGF58715.1| transcription antitermination factor NusB [Bacteroides fluxus YIT 12057] Length = 308 Score = 99.0 bits (246), Expect = 2e-19, Method: Composition-based stats. Identities = 35/147 (23%), Positives = 65/147 (44%), Gaps = 10/147 (6%) Query: 25 QALYQI----DIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRK 80 Q+LY +I+ + I +E + A+ EL E D E+ R + + Sbjct: 167 QSLY-WNDDKEIVDTFVLKTIKRFEEKK-GANQELLPE-FKDDEDQEFARRLFRRTILNC 223 Query: 81 QHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYG 140 + LIS T W R+ + I++ + E++ ++PV V ++EYV IA + Sbjct: 224 DYYRHLISEN-TRNWDLDRVAFMDVVIMQCALAEILSFPNIPVSVSLNEYVDIAKVYSTV 282 Query: 141 DEPKFINAVLDKVSRKEEIKRSGCVSA 167 F+N LD + ++K+ G ++ Sbjct: 283 KSGSFVNGTLDGIV--NQLKKEGKLTK 307 >gi|225011815|ref|ZP_03702253.1| transcription antitermination factor NusB [Flavobacteria bacterium MS024-2A] gi|225004318|gb|EEG42290.1| transcription antitermination factor NusB [Flavobacteria bacterium MS024-2A] Length = 314 Score = 99.0 bits (246), Expect = 2e-19, Method: Composition-based stats. Identities = 24/99 (24%), Positives = 46/99 (46%), Gaps = 7/99 (7%) Query: 63 HVDLEWFRVIIHGVMDRKQHIDLLISSCL---TEKWSFSRLDMILCSILRAGVLELIECH 119 D ++ ++ V+ D + L T W R+ + IL+ + EL+ Sbjct: 207 KEDTDFGIQLLEKVIAN----DSKLQEELLGKTPNWDAERIAQLDNVILKVAIAELLYFP 262 Query: 120 SVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEE 158 +P +V ++EY+ IA D+ F+N VLDK+ ++ + Sbjct: 263 MIPSKVTLNEYLEIAKDYSTPKSNNFVNGVLDKLVKEFD 301 >gi|160892144|ref|ZP_02073147.1| hypothetical protein BACUNI_04607 [Bacteroides uniformis ATCC 8492] gi|270296236|ref|ZP_06202436.1| conserved hypothetical protein [Bacteroides sp. D20] gi|317480857|ref|ZP_07939938.1| transcription antitermination factor NusB [Bacteroides sp. 4_1_36] gi|156858622|gb|EDO52053.1| hypothetical protein BACUNI_04607 [Bacteroides uniformis ATCC 8492] gi|270273640|gb|EFA19502.1| conserved hypothetical protein [Bacteroides sp. D20] gi|316902942|gb|EFV24815.1| transcription antitermination factor NusB [Bacteroides sp. 4_1_36] Length = 308 Score = 99.0 bits (246), Expect = 2e-19, Method: Composition-based stats. Identities = 35/147 (23%), Positives = 64/147 (43%), Gaps = 10/147 (6%) Query: 25 QALYQI----DIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRK 80 Q+LY +I+ + I +E A+ EL E D E+ R + + Sbjct: 167 QSLY-WNDDKEIVDTFVLKTIKRFEEKN-GANQELLPE-FKDEEDQEFARRLFRRAILNC 223 Query: 81 QHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYG 140 + LIS T W R+ + I++ + E++ ++PV V ++EYV IA + Sbjct: 224 DYYRHLISEN-TRNWDLDRVAFMDVVIMQCALAEILSFPNIPVSVSLNEYVDIAKVYSTA 282 Query: 141 DEPKFINAVLDKVSRKEEIKRSGCVSA 167 F+N LD + ++K+ G ++ Sbjct: 283 KSGSFVNGTLDGIV--NQLKKEGKLTK 307 >gi|189467494|ref|ZP_03016279.1| hypothetical protein BACINT_03883 [Bacteroides intestinalis DSM 17393] gi|189435758|gb|EDV04743.1| hypothetical protein BACINT_03883 [Bacteroides intestinalis DSM 17393] Length = 308 Score = 99.0 bits (246), Expect = 2e-19, Method: Composition-based stats. Identities = 33/147 (22%), Positives = 61/147 (41%), Gaps = 10/147 (6%) Query: 25 QALYQI----DIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRK 80 Q+LY +I+ + I +E T L D E+ R + + Sbjct: 167 QSLY-WNDDKEIVDTFVLKTIKRFEEKNGANQTLLP--EFKDEEDQEFARRLFRRAILNC 223 Query: 81 QHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYG 140 + LIS T W R+ + I++ + E++ ++PV V ++EYV IA + Sbjct: 224 DYYRHLISEN-TRNWDLDRVAFMDVIIMQCALAEILSFPNIPVSVSLNEYVEIAKVYSTI 282 Query: 141 DEPKFINAVLDKVSRKEEIKRSGCVSA 167 F+N LD + ++K+ G ++ Sbjct: 283 KSGSFVNGTLDGIV--NQLKKEGKLAK 307 >gi|110638835|ref|YP_679044.1| antitermination factor [Cytophaga hutchinsonii ATCC 33406] gi|110281516|gb|ABG59702.1| antitermination factor [Cytophaga hutchinsonii ATCC 33406] Length = 389 Score = 99.0 bits (246), Expect = 2e-19, Method: Composition-based stats. Identities = 26/115 (22%), Positives = 53/115 (46%), Gaps = 3/115 (2%) Query: 53 TELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGV 112 EL S D E+ + + LI+ + W RL IL+ + Sbjct: 269 YELPSLSPNWEDDQEFMLELYKESTAFDDAAEKLITDK-VQNWDIERLAFTDRIILKMAL 327 Query: 113 LELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRSGCVSA 167 E+++ ++PV+V I+EY+ ++ + +F+N +LD +S ++++SG + Sbjct: 328 TEMVKFPNIPVKVTINEYIELSKSYSTPKSKQFVNGLLDTIS--IDLQKSGLIQK 380 >gi|325285045|ref|YP_004260835.1| NusB antitermination factor [Cellulophaga lytica DSM 7489] gi|324320499|gb|ADY27964.1| NusB antitermination factor [Cellulophaga lytica DSM 7489] Length = 315 Score = 99.0 bits (246), Expect = 2e-19, Method: Composition-based stats. Identities = 28/112 (25%), Positives = 50/112 (44%), Gaps = 3/112 (2%) Query: 57 VESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELI 116 E + D+ + + ++ + I T W R+ I +L+ + EL+ Sbjct: 202 PELLKEDDDMVYAKQLLTKTLLNDAEYVKEIVGK-TPNWDKDRIADIDGILLKMAICELL 260 Query: 117 ECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRSGCVSAI 168 S+P +V I+E++ IA ++ FIN +LDK+ R E K G + I Sbjct: 261 NFPSIPEKVTINEFLEIAKEYSTPKSSIFINGILDKLVR--EYKSEGKLKKI 310 >gi|253572755|ref|ZP_04850155.1| conserved hypothetical protein [Bacteroides sp. 1_1_6] gi|298384353|ref|ZP_06993913.1| NusB family protein [Bacteroides sp. 1_1_14] gi|251837655|gb|EES65746.1| conserved hypothetical protein [Bacteroides sp. 1_1_6] gi|298262632|gb|EFI05496.1| NusB family protein [Bacteroides sp. 1_1_14] Length = 308 Score = 99.0 bits (246), Expect = 2e-19, Method: Composition-based stats. Identities = 35/147 (23%), Positives = 65/147 (44%), Gaps = 10/147 (6%) Query: 25 QALYQI----DIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRK 80 Q+LY +I+ + I +E A+ EL E D E+ R + + Sbjct: 167 QSLY-WNDDKEIVDTFVLKTIKRFEEKN-GANQELLPE-FKDDEDQEFARRLFRRTILNA 223 Query: 81 QHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYG 140 + L+S T+ W R+ + I++ + E++ ++PV V ++EYV IA + Sbjct: 224 DYYRHLVSEN-TKNWDLDRIAFMDIIIMQTALAEILSFPNIPVSVSLNEYVEIAKLYSTA 282 Query: 141 DEPKFINAVLDKVSRKEEIKRSGCVSA 167 FIN LD + ++K+ G ++ Sbjct: 283 KSGSFINGTLDGIV--NQLKKEGKLTK 307 >gi|281420711|ref|ZP_06251710.1| NusB family protein [Prevotella copri DSM 18205] gi|281405484|gb|EFB36164.1| NusB family protein [Prevotella copri DSM 18205] Length = 355 Score = 99.0 bits (246), Expect = 2e-19, Method: Composition-based stats. Identities = 28/128 (21%), Positives = 51/128 (39%), Gaps = 7/128 (5%) Query: 35 CSTTEIISEYE---TYRFCADTELDVE---SVYLHVDLEWFRVIIHGVMDRKQHIDLLIS 88 +II + RF + + E D E+ R + + +S Sbjct: 178 NDDKDIIDTFVLKTIKRFDPEAKAKQELLPEYKDAEDREFARKLFRATILNCDTYQRYMS 237 Query: 89 SCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINA 148 L W FSRL + I++ + E++ +P V I+EYV +A + ++N Sbjct: 238 EAL-RNWDFSRLAYMDVIIMQIAIAEVMNFPGIPATVTINEYVELAKAYSTPRSGGYVNG 296 Query: 149 VLDKVSRK 156 +LD + R+ Sbjct: 297 MLDSICRE 304 >gi|300868307|ref|ZP_07112935.1| N utilization substance protein B homolog [Oscillatoria sp. PCC 6506] gi|300333687|emb|CBN58119.1| N utilization substance protein B homolog [Oscillatoria sp. PCC 6506] Length = 210 Score = 99.0 bits (246), Expect = 2e-19, Method: Composition-based stats. Identities = 27/95 (28%), Positives = 46/95 (48%), Gaps = 2/95 (2%) Query: 68 WFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVII 127 + I+ V + ID L+S+ L W RL I I+R V E++ +P +V I Sbjct: 116 YALKILGTVSANRPAIDELLSAALV-DWQIDRLPRIDRDIMRIAVAEIMF-LDLPEQVGI 173 Query: 128 SEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRS 162 +E + +A + + +FIN VL + K + + S Sbjct: 174 NEAIELAKRYSGDEGYRFINGVLRRAVEKIKPESS 208 >gi|330836447|ref|YP_004411088.1| NusB antitermination factor [Spirochaeta coccoides DSM 17374] gi|329748350|gb|AEC01706.1| NusB antitermination factor [Spirochaeta coccoides DSM 17374] Length = 138 Score = 99.0 bits (246), Expect = 2e-19, Method: Composition-based stats. Identities = 26/108 (24%), Positives = 52/108 (48%), Gaps = 1/108 (0%) Query: 55 LDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLE 114 + + + + + R ++ G ++ ID +I++ + +F R+D+I +ILR V Sbjct: 10 QEEQDEFEPEVVLFARYLVAGTLENIDGIDDVIAAYSVRR-AFDRIDVIDRNILRISVFS 68 Query: 115 LIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRS 162 L VII E V ++ +F +FIN +LD + ++ R+ Sbjct: 69 LFFSEDTHPHVIIDEAVKLSQEFSSEVNYRFINGLLDALMQELSAYRT 116 >gi|255531305|ref|YP_003091677.1| NusB/RsmB/TIM44 [Pedobacter heparinus DSM 2366] gi|255344289|gb|ACU03615.1| NusB/RsmB/TIM44 [Pedobacter heparinus DSM 2366] Length = 316 Score = 99.0 bits (246), Expect = 2e-19, Method: Composition-based stats. Identities = 26/138 (18%), Positives = 63/138 (45%), Gaps = 4/138 (2%) Query: 31 DIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSC 90 +++ + I + + + + + D ++ + + + LI+ Sbjct: 176 EVMQGMVAKTIKNFTSEDPFKNKLTPISQDWAE-DSKFVEDLFVHTLKSDKEYQGLIAER 234 Query: 91 LTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVL 150 T+ W R+ ++ +++ + EL+ S+PV+V I+EY+ ++ D+ FIN +L Sbjct: 235 -TKNWESERIALMDTILMKMAICELMNFPSIPVKVTINEYLDLSKDYSTPKSNSFINGIL 293 Query: 151 DKVSRKEEIKRSGCVSAI 168 DK+ ++KR+ + I Sbjct: 294 DKIL--GDLKRTNSIHKI 309 >gi|218129920|ref|ZP_03458724.1| hypothetical protein BACEGG_01503 [Bacteroides eggerthii DSM 20697] gi|317476859|ref|ZP_07936102.1| transcription antitermination factor NusB [Bacteroides eggerthii 1_2_48FAA] gi|217988030|gb|EEC54355.1| hypothetical protein BACEGG_01503 [Bacteroides eggerthii DSM 20697] gi|316907034|gb|EFV28745.1| transcription antitermination factor NusB [Bacteroides eggerthii 1_2_48FAA] Length = 308 Score = 98.6 bits (245), Expect = 2e-19, Method: Composition-based stats. Identities = 31/147 (21%), Positives = 62/147 (42%), Gaps = 10/147 (6%) Query: 25 QALYQI----DIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRK 80 Q+LY +I+ + I ++ + + D ++ R + + Sbjct: 167 QSLY-WNDDKEIVDTFVLKTIKRFDEKNGA--NQPLLPEFKDEEDRDFARRLFRRSILNC 223 Query: 81 QHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYG 140 + LIS T W R+ + I++ + E++ ++PV V ++EYV IA + Sbjct: 224 DYYRHLISEN-TRNWDLDRVAFMDVVIMQCALAEILSFPNIPVSVSLNEYVDIAKVYSTT 282 Query: 141 DEPKFINAVLDKVSRKEEIKRSGCVSA 167 F+N LD + + E+K+ G +S Sbjct: 283 KSGSFVNGTLDGIVK--ELKKEGKLSK 307 >gi|229495644|ref|ZP_04389373.1| NusB family protein [Porphyromonas endodontalis ATCC 35406] gi|229317414|gb|EEN83318.1| NusB family protein [Porphyromonas endodontalis ATCC 35406] Length = 348 Score = 98.6 bits (245), Expect = 2e-19, Method: Composition-based stats. Identities = 24/133 (18%), Positives = 54/133 (40%), Gaps = 7/133 (5%) Query: 35 CSTTEIISEY------ETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLIS 88 S EI E+ + + E+ + + D ++ + ++ +I+ Sbjct: 212 SSPVEIEKEFALKSMRKAKPDTSFDEVIIPAYKDEEDTHLAAELLRTTIVHEEEYREIIN 271 Query: 89 SCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINA 148 L W R+ + IL+ + EL+ ++P V ++EY+ +A + + F+N Sbjct: 272 KNL-RNWDMDRVTDVDMIILQMALAELLSFPTIPTTVTLNEYIELAKIYSTAESGVFVNG 330 Query: 149 VLDKVSRKEEIKR 161 +LD + +R Sbjct: 331 LLDSALHQLRNER 343 >gi|260591412|ref|ZP_05856870.1| NusB family protein [Prevotella veroralis F0319] gi|260536604|gb|EEX19221.1| NusB family protein [Prevotella veroralis F0319] Length = 357 Score = 98.6 bits (245), Expect = 2e-19, Method: Composition-based stats. Identities = 28/127 (22%), Positives = 52/127 (40%), Gaps = 7/127 (5%) Query: 35 CSTTEIISEYETY---RFCADTELDVE---SVYLHVDLEWFRVIIHGVMDRKQHIDLLIS 88 EI+ + RF + + D E D E+ + + +S Sbjct: 171 NDDKEIVDTFVIKTIKRFDPENKADQELLPEYRDEEDREFAVKLFRSTILNADEYQRYMS 230 Query: 89 SCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINA 148 + W FSRL + I++ + E++ ++P V I+EYV +A + +IN Sbjct: 231 ES-SRNWDFSRLAYMDVVIMQIAIAEMMTFPNIPATVTINEYVDLAKLYSTPRSGGYING 289 Query: 149 VLDKVSR 155 +LD ++R Sbjct: 290 MLDTIAR 296 >gi|86609546|ref|YP_478308.1| transcription antitermination protein NusB [Synechococcus sp. JA-2-3B'a(2-13)] gi|119390840|sp|Q2JHC7|NUSB_SYNJB RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|86558088|gb|ABD03045.1| transcription antitermination factor NusB [Synechococcus sp. JA-2-3B'a(2-13)] Length = 291 Score = 98.6 bits (245), Expect = 2e-19, Method: Composition-based stats. Identities = 33/138 (23%), Positives = 53/138 (38%), Gaps = 9/138 (6%) Query: 25 QALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLH--------VDLEWFRVIIHGV 76 QAL ++ S I+ E A + V + ++ + Sbjct: 134 QALEHLEQRLHSVRHILDEVVQLSQRAVNRVGVALSMPELLYIAQSQEVRAYALQLLTAL 193 Query: 77 MDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHD 136 K+ ID + L W R+ I ILR V+E+ S PV+V I+E V +A Sbjct: 194 RTHKEAIDARLQKALV-GWQLQRVGRIERDILRLAVVEMEILASSPVKVAINEAVELAKK 252 Query: 137 FFYGDEPKFINAVLDKVS 154 + + F+N VL +V Sbjct: 253 YGDPEAAAFVNGVLRRVV 270 >gi|224538936|ref|ZP_03679475.1| hypothetical protein BACCELL_03833 [Bacteroides cellulosilyticus DSM 14838] gi|224519454|gb|EEF88559.1| hypothetical protein BACCELL_03833 [Bacteroides cellulosilyticus DSM 14838] Length = 308 Score = 98.6 bits (245), Expect = 2e-19, Method: Composition-based stats. Identities = 33/147 (22%), Positives = 61/147 (41%), Gaps = 10/147 (6%) Query: 25 QALYQI----DIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRK 80 Q+LY +I+ + I +E T L D E+ R + + Sbjct: 167 QSLY-WNDDKEIVDTFVLKTIKRFEAKNGANQTLLP--EFKDEEDQEFARRLFRRAILNC 223 Query: 81 QHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYG 140 + LIS T W R+ + I++ + E++ ++PV V ++EYV IA + Sbjct: 224 DYYRHLISEN-TRNWDLDRVAFMDVIIMQCALAEILSFPNIPVSVSLNEYVEIAKVYSTI 282 Query: 141 DEPKFINAVLDKVSRKEEIKRSGCVSA 167 F+N LD + ++K+ G ++ Sbjct: 283 KSGSFVNGTLDGIV--NQLKKEGKLAK 307 >gi|289549038|ref|YP_003474026.1| NusB antitermination factor [Thermocrinis albus DSM 14484] gi|289182655|gb|ADC89899.1| NusB antitermination factor [Thermocrinis albus DSM 14484] Length = 138 Score = 98.6 bits (245), Expect = 2e-19, Method: Composition-based stats. Identities = 30/140 (21%), Positives = 56/140 (40%), Gaps = 11/140 (7%) Query: 18 IARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVM 77 AR A LYQ ++ G + EY + +E + R ++ M Sbjct: 6 KAREDAFLILYQWEMKGEDPFALAEEYIRMKNIKYSERR----------RYVRKMVRTFM 55 Query: 78 DRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDF 137 + + +D ++ + E W RL + +ILR + EL+ + I +YV + + Sbjct: 56 ENWKEVDKILGQ-MVEDWDLDRLGYVERNILRVALTELMFLKVKNPKQAIFDYVKLTLKY 114 Query: 138 FYGDEPKFINAVLDKVSRKE 157 +F+N VL + R + Sbjct: 115 AGKTPARFVNGVLGRFLRDK 134 >gi|282879732|ref|ZP_06288462.1| transcription antitermination factor NusB [Prevotella timonensis CRIS 5C-B1] gi|281306401|gb|EFA98431.1| transcription antitermination factor NusB [Prevotella timonensis CRIS 5C-B1] Length = 334 Score = 98.6 bits (245), Expect = 2e-19, Method: Composition-based stats. Identities = 25/125 (20%), Positives = 52/125 (41%), Gaps = 3/125 (2%) Query: 31 DIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSC 90 +++ + I ++ L D E+ R + + +S Sbjct: 175 EVVDTFVLKTIKRFDAANKSEQELLP--EYRDEEDREFARKLFRATILNADTYQRYMSET 232 Query: 91 LTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVL 150 + W FSRL + I++ + E++ ++P+ V I+EYV +A + +IN +L Sbjct: 233 -SHNWDFSRLAYMDVVIMQIAIAEMLTFPNIPISVTINEYVNLAKLYSTPKSGGYINGML 291 Query: 151 DKVSR 155 D ++R Sbjct: 292 DAIAR 296 >gi|150024632|ref|YP_001295458.1| N utilization substance protein B [Flavobacterium psychrophilum JIP02/86] gi|149771173|emb|CAL42640.1| N utilization substance protein B homolog (NusBprotein) [Flavobacterium psychrophilum JIP02/86] Length = 303 Score = 98.6 bits (245), Expect = 2e-19, Method: Composition-based stats. Identities = 28/122 (22%), Positives = 53/122 (43%), Gaps = 2/122 (1%) Query: 40 IISEYETYRFCADTELDVESVYLHV-DLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFS 98 I+ + + + V +Y D E+ + V Q + + T W Sbjct: 172 ILKQLNAIKNTENGNFYVPKLYKDTEDKEFVGNLFRKVALNDQQLAKEFADK-TPNWEAD 230 Query: 99 RLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEE 158 R+ I IL+ + E ++ S+PV+V I+EY+ +A ++ FIN +LD + ++ E Sbjct: 231 RIAEIDTIILKMAICEFLKFPSIPVKVTINEYLELAKEYSTPKSSIFINGILDNLVKEFE 290 Query: 159 IK 160 Sbjct: 291 SN 292 >gi|29349999|ref|NP_813502.1| putative nitrogen utilization substance protein [Bacteroides thetaiotaomicron VPI-5482] gi|29341910|gb|AAO79696.1| putative nitrogen utilization substance protein [Bacteroides thetaiotaomicron VPI-5482] Length = 260 Score = 98.6 bits (245), Expect = 3e-19, Method: Composition-based stats. Identities = 35/147 (23%), Positives = 65/147 (44%), Gaps = 10/147 (6%) Query: 25 QALYQI----DIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRK 80 Q+LY +I+ + I +E A+ EL E D E+ R + + Sbjct: 119 QSLY-WNDDKEIVDTFVLKTIKRFEEKN-GANQELLPE-FKDDEDQEFARRLFRRTILNA 175 Query: 81 QHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYG 140 + L+S T+ W R+ + I++ + E++ ++PV V ++EYV IA + Sbjct: 176 DYYRHLVSEN-TKNWDLDRIAFMDIIIMQTALAEILSFPNIPVSVSLNEYVEIAKLYSTA 234 Query: 141 DEPKFINAVLDKVSRKEEIKRSGCVSA 167 FIN LD + ++K+ G ++ Sbjct: 235 KSGSFINGTLDGIV--NQLKKEGKLTK 259 >gi|262340975|ref|YP_003283830.1| transcription antitermination factor NusB [Blattabacterium sp. (Blattella germanica) str. Bge] gi|262272312|gb|ACY40220.1| transcription antitermination factor NusB [Blattabacterium sp. (Blattella germanica) str. Bge] Length = 300 Score = 98.6 bits (245), Expect = 3e-19, Method: Composition-based stats. Identities = 19/100 (19%), Positives = 47/100 (47%), Gaps = 1/100 (1%) Query: 63 HVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVP 122 + + ++ + + K+ + LI+ ++ W+ R+ ++ IL+ + E + ++P Sbjct: 193 NENKKFVIDLYRNTIFHKEEFNSLIND-ISNNWNIKRIAILDLIILQMAICEFLYFPNIP 251 Query: 123 VEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRS 162 + ++EY+ I F FIN +LD++ + K Sbjct: 252 PKATMNEYIEITKIFCMEKSKIFINGILDQIFKFLHKKNK 291 >gi|293400615|ref|ZP_06644760.1| transcription antitermination factor NusB [Erysipelotrichaceae bacterium 5_2_54FAA] gi|291305641|gb|EFE46885.1| transcription antitermination factor NusB [Erysipelotrichaceae bacterium 5_2_54FAA] Length = 126 Score = 98.6 bits (245), Expect = 3e-19, Method: Composition-based stats. Identities = 33/142 (23%), Positives = 59/142 (41%), Gaps = 16/142 (11%) Query: 12 LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71 ++ R R A+ LYQ ++ E + E E+D + +D Sbjct: 1 MAVSRHELREKAMTCLYQHFLLNKDIKETVFENNDSN-----EIDPFLYTVTID------ 49 Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131 + ++ +I+ L E W+F RL + +IL EL + P ++I+E V Sbjct: 50 ----AIKYEEDYIQMINEALREDWTFERLGYVEKAILIMAACEL-DMEIAPKPIVINEAV 104 Query: 132 CIAHDFFYGDEPKFINAVLDKV 153 +A + + K IN VLD++ Sbjct: 105 TLAKKYCDEETYKLINGVLDRL 126 >gi|254414272|ref|ZP_05028039.1| transcription antitermination factor NusB, putative [Microcoleus chthonoplastes PCC 7420] gi|196178947|gb|EDX73944.1| transcription antitermination factor NusB, putative [Microcoleus chthonoplastes PCC 7420] Length = 213 Score = 98.6 bits (245), Expect = 3e-19, Method: Composition-based stats. Identities = 24/88 (27%), Positives = 42/88 (47%), Gaps = 2/88 (2%) Query: 66 LEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEV 125 + I+ + R+ ID ++ L + W +RL I ILR V E+ +P V Sbjct: 113 RAYAIEILQAIRRRQVEIDEILVKSL-KDWQINRLPRIDRDILRIAVAEMAF-LGIPDRV 170 Query: 126 IISEYVCIAHDFFYGDEPKFINAVLDKV 153 I+E + +A + + +F+N VL +V Sbjct: 171 AINEAIELAKRYSDQEGHRFVNGVLRRV 198 >gi|160915119|ref|ZP_02077332.1| hypothetical protein EUBDOL_01127 [Eubacterium dolichum DSM 3991] gi|158432918|gb|EDP11207.1| hypothetical protein EUBDOL_01127 [Eubacterium dolichum DSM 3991] Length = 126 Score = 98.3 bits (244), Expect = 3e-19, Method: Composition-based stats. Identities = 35/142 (24%), Positives = 60/142 (42%), Gaps = 16/142 (11%) Query: 12 LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71 ++ R R A+ +LYQ ++ E + E E+D + +D ++ Sbjct: 1 MTLSRHKLREIAMTSLYQHFLLSKDIKECVYEN-----TQSNEIDPFLYTITIDAIRYKD 55 Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131 G HID L + W+F RL + +IL EL + + P ++I E V Sbjct: 56 TYVG------HIDET----LRDDWTFERLGYVEKAILLMAACEL-DFETAPKAIVIDEAV 104 Query: 132 CIAHDFFYGDEPKFINAVLDKV 153 +A + D + IN VLD++ Sbjct: 105 NLAKKYCDEDTYRLINGVLDRL 126 >gi|299140507|ref|ZP_07033645.1| NusB family protein [Prevotella oris C735] gi|298577473|gb|EFI49341.1| NusB family protein [Prevotella oris C735] Length = 321 Score = 98.3 bits (244), Expect = 3e-19, Method: Composition-based stats. Identities = 23/124 (18%), Positives = 50/124 (40%), Gaps = 3/124 (2%) Query: 31 DIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSC 90 +++ + I +E L D ++ R + + +S Sbjct: 175 EVVDTFVLKTIKRFEQENKSMQELLP--EYKDEEDKDFARKLFRATILNADQYQRYMSEA 232 Query: 91 LTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVL 150 + W F RL + I++ + E++ ++P+ V I+EYV +A + +IN +L Sbjct: 233 -SRNWDFGRLAYMDVVIMQIAIAEMLTFPNIPISVTINEYVDLAKLYSTPKSGGYINGML 291 Query: 151 DKVS 154 D ++ Sbjct: 292 DSIA 295 >gi|312891647|ref|ZP_07751157.1| NusB antitermination factor [Mucilaginibacter paludis DSM 18603] gi|311295831|gb|EFQ72990.1| NusB antitermination factor [Mucilaginibacter paludis DSM 18603] Length = 315 Score = 98.3 bits (244), Expect = 3e-19, Method: Composition-based stats. Identities = 32/148 (21%), Positives = 64/148 (43%), Gaps = 17/148 (11%) Query: 23 AVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHV--DLEWFRVIIHGVMDRK 80 +QAL I ++ + F + + V ++ D E+ + + Sbjct: 177 VLQAL------------IAKTFKNFSFEEAEKNKLAEVVVNWVDDREYIVSLFQHTIRYD 224 Query: 81 QHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYG 140 + I++ T+ W R+ M+ +++ + E + S+PV+V I+EY+ I+ +F Sbjct: 225 EMFQEWITAK-TQNWEPERIAMMDTLLMKMAIAEFVYFPSIPVKVTINEYLEISKEFSTP 283 Query: 141 DEPKFINAVLDKVSRKEEIKRSGCVSAI 168 FIN +LDK+ E+K G + Sbjct: 284 KSNSFINGILDKIL--FELKAEGKIKKT 309 >gi|303238065|ref|ZP_07324606.1| transcription antitermination factor NusB [Prevotella disiens FB035-09AN] gi|302481761|gb|EFL44815.1| transcription antitermination factor NusB [Prevotella disiens FB035-09AN] Length = 355 Score = 98.3 bits (244), Expect = 3e-19, Method: Composition-based stats. Identities = 28/125 (22%), Positives = 55/125 (44%), Gaps = 3/125 (2%) Query: 31 DIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSC 90 +I+ + I ++ A+ EL E D ++ + + +S Sbjct: 175 EIVDTFVVKTIKRFDPANK-ANQELLPE-FKDEEDKDFAIKLFRSTILNADTYQRYMSET 232 Query: 91 LTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVL 150 + W FSRL + I++ + E++ ++PV V I+EYV +A + +IN +L Sbjct: 233 -SRNWDFSRLAYMDIVIMQIAIAEMLNFPNIPVSVSINEYVELAKLYSTPRSGSYINGML 291 Query: 151 DKVSR 155 D ++R Sbjct: 292 DAIAR 296 >gi|281423250|ref|ZP_06254163.1| NusB family protein [Prevotella oris F0302] gi|281402586|gb|EFB33417.1| NusB family protein [Prevotella oris F0302] Length = 319 Score = 98.3 bits (244), Expect = 3e-19, Method: Composition-based stats. Identities = 23/124 (18%), Positives = 50/124 (40%), Gaps = 3/124 (2%) Query: 31 DIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSC 90 +++ + I +E L D ++ R + + +S Sbjct: 175 EVVDTFVLKTIKRFEQENTSMQELLPEYKD--EEDKDFARKLFRATILNADQYQRYMSEA 232 Query: 91 LTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVL 150 + W F RL + I++ + E++ ++P+ V I+EYV +A + +IN +L Sbjct: 233 -SRNWDFGRLAYMDVVIMQIAIAEMLTFPNIPISVTINEYVDLAKLYSTQKSGGYINGML 291 Query: 151 DKVS 154 D ++ Sbjct: 292 DSIA 295 >gi|298209147|ref|YP_003717326.1| putative N utilization substance protein [Croceibacter atlanticus HTCC2559] gi|83849074|gb|EAP86943.1| putative N utilization substance protein [Croceibacter atlanticus HTCC2559] Length = 302 Score = 98.3 bits (244), Expect = 3e-19, Method: Composition-based stats. Identities = 26/104 (25%), Positives = 51/104 (49%), Gaps = 3/104 (2%) Query: 65 DLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVE 124 D ++ ++ + IS T W R+ + +++ + E ++ S+PV+ Sbjct: 197 DRDFAVELMQKTILNDVEYTSEISKK-TPNWDKERIAELDAVLMKMAICEFVKFPSIPVK 255 Query: 125 VIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRSGCVSAI 168 V I+EY+ IA ++ FIN +LDK+S+ E K G ++ + Sbjct: 256 VTINEYLEIAKEYSTPKSSIFINGILDKISK--EFKADGKLNKM 297 >gi|213963621|ref|ZP_03391873.1| antitermination protein NusB [Capnocytophaga sputigena Capno] gi|213953749|gb|EEB65079.1| antitermination protein NusB [Capnocytophaga sputigena Capno] Length = 302 Score = 98.3 bits (244), Expect = 4e-19, Method: Composition-based stats. Identities = 28/123 (22%), Positives = 56/123 (45%), Gaps = 2/123 (1%) Query: 40 IISEYETYRFCADTELDVESVYLH-VDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFS 98 I+ E++ R + S+Y + + E+ ++ + + LT W Sbjct: 171 IVREFKNLRPNPPEKYFTPSLYNNSEEKEFLVDLLKKTALNDAKLKSFVEDKLT-NWDKE 229 Query: 99 RLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEE 158 R+ ++ IL+ + E + S+PV+V I+EY+ +A ++ FIN VL+ V ++ Sbjct: 230 RVAVLDLIILKMAICEFLHFPSIPVKVTINEYLELAKEYSTAKSSLFINGVLNVVHKELS 289 Query: 159 IKR 161 K Sbjct: 290 EKE 292 >gi|116514375|ref|YP_813281.1| transcription termination factor [Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365] gi|116093690|gb|ABJ58843.1| Transcription termination factor [Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365] Length = 122 Score = 98.3 bits (244), Expect = 4e-19, Method: Composition-based stats. Identities = 26/133 (19%), Positives = 54/133 (40%), Gaps = 11/133 (8%) Query: 24 VQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHI 83 +QA+Y + + SE E A + L + + ++ GV+D++ + Sbjct: 1 MQAIY---LYNQDPSLTASELENNVKSA--------LDLDTLPAYSQELVSGVIDKQAEL 49 Query: 84 DLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEP 143 +S+ L + W RL +IL + E++ + I+E + + +F Sbjct: 50 RDKLSANLKQGWRLERLSKTSLAILEVALYEMLYSPVIEDRSAINEALNLCDEFDDPKSK 109 Query: 144 KFINAVLDKVSRK 156 FIN +L ++ Sbjct: 110 AFINGILANFVQE 122 >gi|305664845|ref|YP_003861132.1| putative N utilization substance protein [Maribacter sp. HTCC2170] gi|88707967|gb|EAR00206.1| putative N utilization substance protein [Maribacter sp. HTCC2170] Length = 304 Score = 98.3 bits (244), Expect = 4e-19, Method: Composition-based stats. Identities = 25/106 (23%), Positives = 51/106 (48%), Gaps = 3/106 (2%) Query: 63 HVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVP 122 + D+++ + ++ + + I T W R+ I +L+ + EL+ S+P Sbjct: 197 NEDMDFAQKLLTKTLLNNSKWEKEIEGK-TPNWDKDRIADIDAILLKMAICELLNFPSIP 255 Query: 123 VEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRSGCVSAI 168 +V I+E++ IA ++ FIN +LDK+ + E K G + + Sbjct: 256 EKVTINEFLEIAKEYSTPKSSIFINGILDKLVK--EYKTEGKLKKV 299 >gi|325680657|ref|ZP_08160195.1| transcription antitermination factor NusB [Ruminococcus albus 8] gi|324107437|gb|EGC01715.1| transcription antitermination factor NusB [Ruminococcus albus 8] Length = 137 Score = 98.3 bits (244), Expect = 4e-19, Method: Composition-based stats. Identities = 32/145 (22%), Positives = 64/145 (44%), Gaps = 13/145 (8%) Query: 14 HRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVII 73 R R AA S ++ + E E E + L+ D+ + ++ Sbjct: 2 ASRHDIRQAAFLL---------SFEKLFLDEELESLFEGAEELGEFLLLNDDV---KDLV 49 Query: 74 HGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCI 133 V D+++ +D +IS ++K + +R+ + ++LR + E + VPV V ISE V + Sbjct: 50 RCVFDKQEELDSIISKY-SDKRALNRIPKVDLAVLRIAIYEALYDDKVPVNVAISEAVSL 108 Query: 134 AHDFFYGDEPKFINAVLDKVSRKEE 158 + + F+N +L S++ + Sbjct: 109 TEKYALEPDVSFVNGLLGAFSKELK 133 >gi|257068637|ref|YP_003154892.1| transcription antitermination factor NusB [Brachybacterium faecium DSM 4810] gi|256559455|gb|ACU85302.1| transcription antitermination factor NusB [Brachybacterium faecium DSM 4810] Length = 178 Score = 97.9 bits (243), Expect = 4e-19, Method: Composition-based stats. Identities = 32/140 (22%), Positives = 56/140 (40%), Gaps = 13/140 (9%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 R R+ A+ L++ D +++ E R A T L +W R ++ Sbjct: 44 RSRERIRAIDVLFEADAKRIDVLDVLQERLR-RTAAQTPLP----------QWSRTLVEL 92 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVE-VIISEYVCIA 134 ID +++ + W R+ + +ILR G E++ II EY IA Sbjct: 93 YAPHAVDIDEDLATH-SRDWPLHRMPAVDRAILRLGAAEVLYGEEESRRGTIIGEYTKIA 151 Query: 135 HDFFYGDEPKFINAVLDKVS 154 D P+F+N +L ++ Sbjct: 152 EVLSTDDSPRFVNGLLQRLV 171 >gi|332520936|ref|ZP_08397396.1| transcription antitermination factor NusB [Lacinutrix algicola 5H-3-7-4] gi|332043466|gb|EGI79662.1| transcription antitermination factor NusB [Lacinutrix algicola 5H-3-7-4] Length = 303 Score = 97.9 bits (243), Expect = 4e-19, Method: Composition-based stats. Identities = 26/104 (25%), Positives = 52/104 (50%), Gaps = 3/104 (2%) Query: 65 DLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVE 124 D E+ + + + + I+S T W R+ I +L+ G+ E+ + S+P + Sbjct: 198 DKEFAIKLFKKTLLNQSILSKEIASK-TTNWDADRIANIDYLLLKMGICEIKDFPSIPTK 256 Query: 125 VIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRSGCVSAI 168 V I+EY+ I+ ++ FIN +LDK+ + E + G ++ + Sbjct: 257 VTINEYLEISKEYSTPKSKVFINGILDKLVK--EYENEGKLNKV 298 >gi|317056629|ref|YP_004105096.1| NusB antitermination factor [Ruminococcus albus 7] gi|315448898|gb|ADU22462.1| NusB antitermination factor [Ruminococcus albus 7] Length = 137 Score = 97.9 bits (243), Expect = 4e-19, Method: Composition-based stats. Identities = 33/141 (23%), Positives = 63/141 (44%), Gaps = 13/141 (9%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 R R AA ++ + I F + EL ++ VD E + ++ G Sbjct: 4 RREVRQAAFLLSFEKLFMDDELENI--------FNSAQEL---GEFISVDDE-VKALVRG 51 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135 + +++ +D +IS ++K + SR+ + S+LR + E + VPV V ISE V + Sbjct: 52 IFEKQDELDSIISKY-SDKRAVSRIPKVDLSVLRLAIYEALYDDKVPVNVAISEAVSLTE 110 Query: 136 DFFYGDEPKFINAVLDKVSRK 156 + + F+N +L ++ Sbjct: 111 KYALEPDIAFVNGLLGSFAKD 131 >gi|297621030|ref|YP_003709167.1| nusB putative transcription antitermination factor, NusB family [Waddlia chondrophila WSU 86-1044] gi|297376331|gb|ADI38161.1| nusB putative transcription antitermination factor, NusB family [Waddlia chondrophila WSU 86-1044] Length = 145 Score = 97.9 bits (243), Expect = 4e-19, Method: Composition-based stats. Identities = 32/137 (23%), Positives = 61/137 (44%), Gaps = 12/137 (8%) Query: 20 RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79 R Q LY D E + + ++ +E+ +I G R Sbjct: 12 REIVFQLLYGHD-WHSPEKEAFHTFLSKEAKISKKVILEAQERV-------DLIRG---R 60 Query: 80 KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139 ++ +D LI + ++F R+ + +ILR G+ EL+ +P +V I+E + + F Sbjct: 61 EKELDQLIGES-AKSYAFDRIPRVERNILRLGIYELLFDEQIPPKVAIAEAIRLGRKFST 119 Query: 140 GDEPKFINAVLDKVSRK 156 + FINA++D++ +K Sbjct: 120 PESATFINAIMDELYQK 136 >gi|332879944|ref|ZP_08447629.1| putative transcription antitermination factor NusB [Capnocytophaga sp. oral taxon 329 str. F0087] gi|332682155|gb|EGJ55067.1| putative transcription antitermination factor NusB [Capnocytophaga sp. oral taxon 329 str. F0087] Length = 313 Score = 97.9 bits (243), Expect = 4e-19, Method: Composition-based stats. Identities = 26/123 (21%), Positives = 56/123 (45%), Gaps = 2/123 (1%) Query: 40 IISEYETYRFCADTELDVESVYLHVDLEWF-RVIIHGVMDRKQHIDLLISSCLTEKWSFS 98 I+ ++ R + ++Y D + F + + + I LT W Sbjct: 182 IVKLFKNLRPNPPEKYFTPTLYNTDDEKLFLSDLFKKTVLNDNKLKNFIDDKLT-NWDKE 240 Query: 99 RLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEE 158 R+ ++ +L+ V EL+ S+P++V I+EY+ ++ ++ FIN +L+ + ++ E Sbjct: 241 RVAVLDNILLKMAVCELLYFPSIPIKVTINEYLELSKEYSTPKSSLFINGILNVIHKELE 300 Query: 159 IKR 161 K Sbjct: 301 EKE 303 >gi|304382450|ref|ZP_07364948.1| NusB family protein [Prevotella marshii DSM 16973] gi|304336403|gb|EFM02641.1| NusB family protein [Prevotella marshii DSM 16973] Length = 329 Score = 97.9 bits (243), Expect = 5e-19, Method: Composition-based stats. Identities = 24/125 (19%), Positives = 50/125 (40%), Gaps = 3/125 (2%) Query: 31 DIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSC 90 +I+ + I ++ L D + + + +S Sbjct: 175 EIVDTFVLKTIKRFDPQNTTKQELLP--EYKDPEDKAFACKLFRATILNADQYQHYMSET 232 Query: 91 LTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVL 150 + W FSRL + I++ + E++ ++P+ V I+EYV +A + +IN +L Sbjct: 233 -SRNWDFSRLAYMDVVIMQIAIAEMLTFPNIPISVTINEYVELAKLYSTPKSGAYINGML 291 Query: 151 DKVSR 155 D ++R Sbjct: 292 DTIAR 296 >gi|150390542|ref|YP_001320591.1| sun protein [Alkaliphilus metalliredigens QYMF] gi|149950404|gb|ABR48932.1| sun protein [Alkaliphilus metalliredigens QYMF] Length = 444 Score = 97.9 bits (243), Expect = 5e-19, Method: Composition-based stats. Identities = 37/144 (25%), Positives = 64/144 (44%), Gaps = 14/144 (9%) Query: 18 IARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVM 77 AR +A++ LY I+E E Y A + + VD + +++GV+ Sbjct: 2 KARESALKVLY-----------AITEQEAYSNIALNQQFRAETHTPVDKAFVTELVYGVV 50 Query: 78 DRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDF 137 + ID +I T K + ++ S+LR + ++ VPV ++E V ++ + Sbjct: 51 ENLIWIDYVIDQFSTTK-TIK-MNPWTLSLLRLAIYQIFFLDRVPVFAAVNESVDLSKKY 108 Query: 138 FYGDEPKFINAVLDKVSRKEEIKR 161 FIN VL + RK+EI R Sbjct: 109 C-KHTTAFINGVLRNILRKKEIIR 131 >gi|86143181|ref|ZP_01061583.1| putative N utilization substance protein [Leeuwenhoekiella blandensis MED217] gi|85830086|gb|EAQ48546.1| putative N utilization substance protein [Leeuwenhoekiella blandensis MED217] Length = 304 Score = 97.9 bits (243), Expect = 5e-19, Method: Composition-based stats. Identities = 19/94 (20%), Positives = 45/94 (47%), Gaps = 1/94 (1%) Query: 63 HVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVP 122 D ++ + ++ + + I T W R+ + +++ + E + S+P Sbjct: 196 EEDRQFAKDLLLRTARNDEEYEAEILGN-TPNWDQDRIAALDKILIKMALCEFLRFSSIP 254 Query: 123 VEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRK 156 V+V I+EY+ ++ ++ F+N VLD++ +K Sbjct: 255 VKVTINEYLELSKEYSTPKSSIFVNGVLDRLVKK 288 >gi|288803706|ref|ZP_06409135.1| NusB family protein [Prevotella melaninogenica D18] gi|288333795|gb|EFC72241.1| NusB family protein [Prevotella melaninogenica D18] Length = 297 Score = 97.5 bits (242), Expect = 5e-19, Method: Composition-based stats. Identities = 28/125 (22%), Positives = 55/125 (44%), Gaps = 3/125 (2%) Query: 31 DIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSC 90 +++ + I ++ AD EL E D ++ + + +S Sbjct: 114 EVVDTFVIKTIKRFDPAN-GADQELLPE-YRDEEDRDFALKLFRSTILNADDYQRYMSES 171 Query: 91 LTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVL 150 + W FSRL + I++ + E++ ++PV V I+EYV +A + +IN +L Sbjct: 172 -SRNWDFSRLAYMDVVIMQIAIAEMLTFPNIPVTVTINEYVDLAKLYSTPRSGGYINGML 230 Query: 151 DKVSR 155 D ++R Sbjct: 231 DTIAR 235 >gi|282858295|ref|ZP_06267480.1| transcription antitermination factor NusB [Prevotella bivia JCVIHMP010] gi|282588926|gb|EFB94046.1| transcription antitermination factor NusB [Prevotella bivia JCVIHMP010] Length = 337 Score = 97.5 bits (242), Expect = 5e-19, Method: Composition-based stats. Identities = 27/125 (21%), Positives = 57/125 (45%), Gaps = 3/125 (2%) Query: 31 DIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSC 90 +++ + I ++ AD EL E + D ++ + + + +S Sbjct: 175 EVVDTFVVKTIKRFDPAN-GADQELLPEFKDI-ADRQFAIDLFRSTIMNAETYQQYMSEA 232 Query: 91 LTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVL 150 + W FSRL + I++ + E++ ++P+ V I+EYV +A + +IN +L Sbjct: 233 -SHNWDFSRLAYMDVVIMQIAIAEIVNFPNIPISVSINEYVNLAKLYSTPRSGGYINGML 291 Query: 151 DKVSR 155 D ++R Sbjct: 292 DSIAR 296 >gi|315038645|ref|YP_004032213.1| transcriptional termination factor [Lactobacillus amylovorus GRL 1112] gi|325957127|ref|YP_004292539.1| transcription termination factor [Lactobacillus acidophilus 30SC] gi|312276778|gb|ADQ59418.1| transcriptional termination factor [Lactobacillus amylovorus GRL 1112] gi|325333692|gb|ADZ07600.1| transcription termination factor [Lactobacillus acidophilus 30SC] Length = 130 Score = 97.5 bits (242), Expect = 5e-19, Method: Composition-based stats. Identities = 26/138 (18%), Positives = 54/138 (39%), Gaps = 11/138 (7%) Query: 17 GIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGV 76 +R A+QA+Y + E E A + L + + +I GV Sbjct: 4 HESRKVAMQAIY---LANQEPDLNAEEVEAKVVTA--------LNLKQLSAYSKKLIEGV 52 Query: 77 MDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHD 136 ++ + + +S L + W R+ I+ +I+ + E+ + + ++E + + + Sbjct: 53 LENRADLQSALSEHLKKGWRLERVSQIVVAIMEVALFEIKNSDEIDPKAAVNEALNLCDE 112 Query: 137 FFYGDEPKFINAVLDKVS 154 F E FIN +L Sbjct: 113 FAEPKEKPFINGMLANFV 130 >gi|323344945|ref|ZP_08085169.1| NusB family protein [Prevotella oralis ATCC 33269] gi|323094215|gb|EFZ36792.1| NusB family protein [Prevotella oralis ATCC 33269] Length = 329 Score = 97.5 bits (242), Expect = 6e-19, Method: Composition-based stats. Identities = 25/125 (20%), Positives = 51/125 (40%), Gaps = 3/125 (2%) Query: 31 DIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSC 90 +I+ + I ++ L D ++ + + +S Sbjct: 175 EIVDTFVLKTIKRFDPKNKSKQELLPEYKDM--EDKDFACKLFRATILNADQYQHYMSET 232 Query: 91 LTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVL 150 + W FSRL + I++ + E++ ++PV V I+EYV +A + +IN +L Sbjct: 233 -SRNWDFSRLAYMDVVIMQIAIAEMLTFPNIPVSVTINEYVDLAKLYSTPKSGGYINGML 291 Query: 151 DKVSR 155 D ++R Sbjct: 292 DSIAR 296 >gi|194336038|ref|YP_002017832.1| sun protein [Pelodictyon phaeoclathratiforme BU-1] gi|194308515|gb|ACF43215.1| sun protein [Pelodictyon phaeoclathratiforme BU-1] Length = 445 Score = 97.5 bits (242), Expect = 6e-19, Method: Composition-based stats. Identities = 28/140 (20%), Positives = 58/140 (41%), Gaps = 13/140 (9%) Query: 17 GIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGV 76 AR A+Q L ++ + ++ + S D +++GV Sbjct: 2 TTARELALQVLQSLETGKQQSDTLLHRSLHH-----------STLNRADRALSTGLVNGV 50 Query: 77 MDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHD 136 + + +D +I+ K + I+ +ILR GV +++ + VP ++E V +A Sbjct: 51 LRYRLQLDFVIAQFYHHK--LEKAAPIMKNILRLGVYQILFLNKVPDWAAVNECVKLARK 108 Query: 137 FFYGDEPKFINAVLDKVSRK 156 + K +N VL K++ + Sbjct: 109 YKGERMSKLVNGVLRKITPE 128 >gi|167860643|gb|ACA05102.1| putative N utilization substance protein [Flammeovirga yaeyamensis] Length = 200 Score = 97.5 bits (242), Expect = 6e-19, Method: Composition-based stats. Identities = 28/129 (21%), Positives = 65/129 (50%), Gaps = 5/129 (3%) Query: 40 IISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSR 99 ++ + + TE+ S D E+F + +++++ +I+ ++KW+ R Sbjct: 67 VLKTVKNISTDSGTEILSISKNWDEDKEFFEDLYKYTLEQEESFKEIIAKK-SKKWAIDR 125 Query: 100 LDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEE- 158 + + ++ + E++ ++PV+V I+E++ I+ + +FIN +LD +S + E Sbjct: 126 IAKVDSILINMALAEMLNFRNIPVKVTINEFIEISKQYSTPKSWQFINGMLDSISEELEA 185 Query: 159 ---IKRSGC 164 IK+SG Sbjct: 186 EGKIKKSGK 194 >gi|60680691|ref|YP_210835.1| putative N utilization substance protein [Bacteroides fragilis NCTC 9343] gi|60492125|emb|CAH06888.1| putative N utilization substance protein [Bacteroides fragilis NCTC 9343] gi|301162218|emb|CBW21763.1| putative N utilization substance protein [Bacteroides fragilis 638R] Length = 294 Score = 97.5 bits (242), Expect = 6e-19, Method: Composition-based stats. Identities = 32/147 (21%), Positives = 63/147 (42%), Gaps = 10/147 (6%) Query: 25 QALYQI----DIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRK 80 Q+LY +I+ + I +E + + + D E+ R + + Sbjct: 153 QSLY-WNDDKEIVDTFVLKTIKRFEEKQGA--NQPLLPEFKDDEDQEFARRLFRRAILNA 209 Query: 81 QHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYG 140 + LIS T+ W R+ + I++ + E++ ++PV V ++EYV IA + Sbjct: 210 DYYRHLISEN-TKNWDLDRVAFMDVIIMQCALAEILSFPNIPVSVSLNEYVEIAKLYSTV 268 Query: 141 DEPKFINAVLDKVSRKEEIKRSGCVSA 167 FIN LD + ++K+ G ++ Sbjct: 269 KSGSFINGTLDGIV--NQLKKEGKLTK 293 >gi|330752415|emb|CBL87366.1| thioredoxin family protein [uncultured Flavobacteria bacterium] Length = 307 Score = 97.5 bits (242), Expect = 6e-19, Method: Composition-based stats. Identities = 28/125 (22%), Positives = 56/125 (44%), Gaps = 2/125 (1%) Query: 37 TTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWS 96 II+ F D++ + + D+ + + ++ ++ I+ +S T W Sbjct: 177 VNSIITNNINKLFKNDSKSN-KFFKKDDDVSFMISLFKQTINNEEFIENQLSGK-TPNWD 234 Query: 97 FSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRK 156 R+ + IL+ + EL+ ++PV+ I+EY+ IA ++ FIN VLD + Sbjct: 235 KERIAGLDYVILKMAISELLYFPTIPVKATINEYLEIAKEYATPKSAIFINGVLDNSLKD 294 Query: 157 EEIKR 161 K+ Sbjct: 295 FSSKK 299 >gi|326336653|ref|ZP_08202821.1| NusB family protein [Capnocytophaga sp. oral taxon 338 str. F0234] gi|325691123|gb|EGD33094.1| NusB family protein [Capnocytophaga sp. oral taxon 338 str. F0234] Length = 310 Score = 97.5 bits (242), Expect = 6e-19, Method: Composition-based stats. Identities = 31/132 (23%), Positives = 58/132 (43%), Gaps = 9/132 (6%) Query: 40 IISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEK---WS 96 I+ + + L D E+ + ++ + D L L EK W Sbjct: 180 IVKLLKGLSQGKEANLLPPLFKDESDKEFGKELLRKTILN----DELFHQYLVEKTPQWD 235 Query: 97 FSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRK 156 R+ I +++ G+ E ++ S+PV+V ++EYV IA ++ FIN +LD +S+ Sbjct: 236 TERIAEIDAILIKMGITEFLKFPSIPVKVTLNEYVEIAKEYSTPKSSVFINGILDTLSK- 294 Query: 157 EEIKRSGCVSAI 168 + + G + I Sbjct: 295 -DFIQEGKLKKI 305 >gi|303228540|ref|ZP_07315368.1| ribosomal RNA small subunit methyltransferase B [Veillonella atypica ACS-134-V-Col7a] gi|302516787|gb|EFL58701.1| ribosomal RNA small subunit methyltransferase B [Veillonella atypica ACS-134-V-Col7a] Length = 452 Score = 97.5 bits (242), Expect = 6e-19, Method: Composition-based stats. Identities = 36/139 (25%), Positives = 66/139 (47%), Gaps = 14/139 (10%) Query: 20 RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79 RL AV+AL I+ G ++ +Y +D +D +F +++GV+ R Sbjct: 14 RLLAVKALSDINRKGAYANIVLQDYILKYNLSD-----------LDRRFFTELVYGVVRR 62 Query: 80 KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139 + ++D++I +L ++ ILR GV ++I VP ++E V +A Sbjct: 63 RNYLDVIIVHF--ANRPIKKLSSMVVEILRLGVYQIIYMDKVPESAAVNESVKLAKKLTR 120 Query: 140 GDEPKFINAVLDKVSRKEE 158 G F+NA+L V R+++ Sbjct: 121 GLS-GFVNAILRSVIREQD 138 >gi|82621723|gb|ABB86539.1| NusB [uncultured Bacteroidetes bacterium 'SBI2-18 P41A3'] Length = 325 Score = 97.5 bits (242), Expect = 6e-19, Method: Composition-based stats. Identities = 27/96 (28%), Positives = 51/96 (53%), Gaps = 1/96 (1%) Query: 63 HVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVP 122 D E+ +I V++ K+ + IS +T W R+ I +L+ + E + S+P Sbjct: 206 DEDAEFGIELIKYVIENKEMLQDEISK-VTPNWDNERIAQIDLILLQMCLSEFLFFKSIP 264 Query: 123 VEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEE 158 ++V I+EY+ IA ++ FIN ++D +S++ E Sbjct: 265 LKVSINEYLEIAKEYSSDKSNIFINGIMDSLSKQFE 300 >gi|84496669|ref|ZP_00995523.1| NusB antitermination factor [Janibacter sp. HTCC2649] gi|84383437|gb|EAP99318.1| NusB antitermination factor [Janibacter sp. HTCC2649] Length = 136 Score = 97.5 bits (242), Expect = 6e-19, Method: Composition-based stats. Identities = 36/139 (25%), Positives = 66/139 (47%), Gaps = 13/139 (9%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 R +R A+ L++ + + TE++ E V E+ ++ G Sbjct: 4 RTKSRRRAIDLLFEAEQRQVNATELLKERLA-----------TPVTEAPLNEFTANLVTG 52 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135 V+D I+ L+++ ++ WS R+ + +ILR G E++ VP V I+E V IA Sbjct: 53 VVDNWSQINDLLATY-SQGWSVERMPAVDRAILRVGAFEVLFG-EVPEGVAIAEAVAIAT 110 Query: 136 DFFYGDEPKFINAVLDKVS 154 + D PKF+N +L +++ Sbjct: 111 ELSTDDSPKFVNGLLARLA 129 >gi|125973090|ref|YP_001037000.1| sun protein [Clostridium thermocellum ATCC 27405] gi|256004593|ref|ZP_05429571.1| sun protein [Clostridium thermocellum DSM 2360] gi|281417285|ref|ZP_06248305.1| sun protein [Clostridium thermocellum JW20] gi|125713315|gb|ABN51807.1| sun protein [Clostridium thermocellum ATCC 27405] gi|255991465|gb|EEU01569.1| sun protein [Clostridium thermocellum DSM 2360] gi|281408687|gb|EFB38945.1| sun protein [Clostridium thermocellum JW20] gi|316940689|gb|ADU74723.1| sun protein [Clostridium thermocellum DSM 1313] Length = 455 Score = 97.5 bits (242), Expect = 6e-19, Method: Composition-based stats. Identities = 32/149 (21%), Positives = 64/149 (42%), Gaps = 13/149 (8%) Query: 10 LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF 69 + + + R A++ LY I+E Y + + + +D + Sbjct: 1 MDMRTKVDKVRETALKILY-----------DINEKGAYSNISLNKYLNGQEFESIDRAFI 49 Query: 70 RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISE 129 I++G + + ID LI + K ++ + +ILR G+ +LI +P +E Sbjct: 50 TDIVYGTLKWQYTIDYLIEKFSSVK--IKKISPWIFNILRMGIYQLIYTDKIPFFAACNE 107 Query: 130 YVCIAHDFFYGDEPKFINAVLDKVSRKEE 158 V +A + + K++NAVL ++R +E Sbjct: 108 SVKLAAKYGHAASSKYVNAVLRNIARNKE 136 >gi|237713467|ref|ZP_04543948.1| conserved hypothetical protein [Bacteroides sp. D1] gi|262407253|ref|ZP_06083801.1| conserved hypothetical protein [Bacteroides sp. 2_1_22] gi|294644674|ref|ZP_06722424.1| transcription antitermination factor NusB [Bacteroides ovatus SD CC 2a] gi|294809065|ref|ZP_06767787.1| transcription antitermination factor NusB [Bacteroides xylanisolvens SD CC 1b] gi|298482673|ref|ZP_07000857.1| NusB family protein [Bacteroides sp. D22] gi|229446449|gb|EEO52240.1| conserved hypothetical protein [Bacteroides sp. D1] gi|262354061|gb|EEZ03153.1| conserved hypothetical protein [Bacteroides sp. 2_1_22] gi|292640008|gb|EFF58276.1| transcription antitermination factor NusB [Bacteroides ovatus SD CC 2a] gi|294443790|gb|EFG12535.1| transcription antitermination factor NusB [Bacteroides xylanisolvens SD CC 1b] gi|295087143|emb|CBK68666.1| transcription antitermination factor NusB [Bacteroides xylanisolvens XB1A] gi|298271136|gb|EFI12713.1| NusB family protein [Bacteroides sp. D22] Length = 308 Score = 97.1 bits (241), Expect = 7e-19, Method: Composition-based stats. Identities = 34/147 (23%), Positives = 66/147 (44%), Gaps = 10/147 (6%) Query: 25 QALYQI----DIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRK 80 Q+LY +I+ + I ++ + A+ EL E D E+ R + + Sbjct: 167 QSLY-WNDDKEIVDTFVLKTIKRFDEKK-GANQELLPE-FKDDEDQEFARRLFRRTILNS 223 Query: 81 QHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYG 140 + L+S T+ W R+ + I++ + E++ ++PV V ++EYV IA + Sbjct: 224 DYYRHLVSEN-TKNWDLDRIAFMDVIIMQTALAEILSFPNIPVSVSLNEYVEIAKLYSTA 282 Query: 141 DEPKFINAVLDKVSRKEEIKRSGCVSA 167 FIN LD + ++K+ G ++ Sbjct: 283 KSGSFINGTLDGIV--NQLKKEGKLTK 307 >gi|293370796|ref|ZP_06617342.1| transcription antitermination factor NusB [Bacteroides ovatus SD CMC 3f] gi|292634156|gb|EFF52699.1| transcription antitermination factor NusB [Bacteroides ovatus SD CMC 3f] Length = 308 Score = 97.1 bits (241), Expect = 7e-19, Method: Composition-based stats. Identities = 34/147 (23%), Positives = 66/147 (44%), Gaps = 10/147 (6%) Query: 25 QALYQI----DIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRK 80 Q+LY +I+ + I ++ + A+ EL E D E+ R + + Sbjct: 167 QSLY-WNDDKEIVDTFVLKTIKRFDEKK-GANQELLPE-FKDDEDQEFARRLFRRTILNS 223 Query: 81 QHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYG 140 + L+S T+ W R+ + I++ + E++ ++PV V ++EYV IA + Sbjct: 224 DYYRHLVSEN-TKNWDLDRIAFMDVIIMQTALAEILSFPNIPVSVSLNEYVEIAKLYSTA 282 Query: 141 DEPKFINAVLDKVSRKEEIKRSGCVSA 167 FIN LD + ++K+ G ++ Sbjct: 283 KSGSFINGTLDGIV--NQLKKEGKLTK 307 >gi|224026161|ref|ZP_03644527.1| hypothetical protein BACCOPRO_02917 [Bacteroides coprophilus DSM 18228] gi|224019397|gb|EEF77395.1| hypothetical protein BACCOPRO_02917 [Bacteroides coprophilus DSM 18228] Length = 308 Score = 97.1 bits (241), Expect = 7e-19, Method: Composition-based stats. Identities = 29/142 (20%), Positives = 61/142 (42%), Gaps = 8/142 (5%) Query: 25 QALYQI----DIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRK 80 Q+LY +I+ + I ++ D + + D E+ R + + Sbjct: 167 QSLY-WNDDKEIVDTFVLKTIKRFDPKN--GDKQELLPEFKDEEDQEFARRLFRRTILNA 223 Query: 81 QHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYG 140 + LIS ++ W +R+ ++ I++ + E++ ++PV V ++EYV IA + Sbjct: 224 DYYRHLISEG-SKNWDLNRVAVMDVVIMQIALAEILSFPNIPVNVSLNEYVEIAKLYSTP 282 Query: 141 DEPKFINAVLDKVSRKEEIKRS 162 FIN LD + + + + Sbjct: 283 KSGGFINGTLDGIVNQLKKENK 304 >gi|189462539|ref|ZP_03011324.1| hypothetical protein BACCOP_03229 [Bacteroides coprocola DSM 17136] gi|189430700|gb|EDU99684.1| hypothetical protein BACCOP_03229 [Bacteroides coprocola DSM 17136] Length = 308 Score = 97.1 bits (241), Expect = 7e-19, Method: Composition-based stats. Identities = 27/142 (19%), Positives = 60/142 (42%), Gaps = 8/142 (5%) Query: 25 QALYQI----DIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRK 80 Q+LY +I+ + I ++ D + + D ++ R + + Sbjct: 167 QSLY-WNDDKEIVDTFVLKTIKRFDPKN--GDKQELLPEFKDEEDQDFARRLFRRSILNA 223 Query: 81 QHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYG 140 + LIS ++ W R+ ++ I++ + E++ ++P+ V ++EYV IA + Sbjct: 224 DYYRHLISEN-SKNWDLDRVAVMDVIIMQIALAEILSFPNIPINVSLNEYVEIAKLYSTP 282 Query: 141 DEPKFINAVLDKVSRKEEIKRS 162 FIN LD + + + + Sbjct: 283 KSGGFINGTLDGIVNQLKKENK 304 >gi|260171339|ref|ZP_05757751.1| putative N utilization substance protein [Bacteroides sp. D2] gi|315919650|ref|ZP_07915890.1| conserved hypothetical protein [Bacteroides sp. D2] gi|313693525|gb|EFS30360.1| conserved hypothetical protein [Bacteroides sp. D2] Length = 308 Score = 97.1 bits (241), Expect = 8e-19, Method: Composition-based stats. Identities = 34/147 (23%), Positives = 66/147 (44%), Gaps = 10/147 (6%) Query: 25 QALYQI----DIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRK 80 Q+LY +I+ + I ++ + A+ EL E D E+ R + + Sbjct: 167 QSLY-WNDDKEIVDTFVLKTIKRFDEKK-GANQELLPE-FKDDEDQEFARRLFRRTILNS 223 Query: 81 QHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYG 140 + L+S T+ W R+ + I++ + E++ ++PV V ++EYV IA + Sbjct: 224 DYYRHLVSEN-TKNWDLDRIAFMDVIIMQTALAEILSFPNIPVSVSLNEYVEIAKLYSTA 282 Query: 141 DEPKFINAVLDKVSRKEEIKRSGCVSA 167 FIN LD + ++K+ G ++ Sbjct: 283 KSGSFINGTLDGIV--NQLKKEGKLTK 307 >gi|284929125|ref|YP_003421647.1| transcription antitermination factor NusB [cyanobacterium UCYN-A] gi|284809584|gb|ADB95289.1| transcription antitermination factor NusB [cyanobacterium UCYN-A] Length = 216 Score = 97.1 bits (241), Expect = 8e-19, Method: Composition-based stats. Identities = 28/96 (29%), Positives = 50/96 (52%), Gaps = 6/96 (6%) Query: 67 EWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVI 126 ++ IIH + +K+ +D + + L + W RL I ILR V E++ ++P +V Sbjct: 118 KYAIEIIHSICRKKKELDNQLETVL-KDWQLRRLAKIDQDILRIAVAEIL-LLNIPEKVA 175 Query: 127 ISEYVCIAHDFFYGDEPKFINAVL----DKVSRKEE 158 I+E V +A + D +FIN VL D + +++ Sbjct: 176 INEAVELAKRYSDDDGYRFINGVLRRFVDHIKEEKK 211 >gi|255007968|ref|ZP_05280094.1| putative N utilization substance protein [Bacteroides fragilis 3_1_12] gi|313145684|ref|ZP_07807877.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12] gi|313134451|gb|EFR51811.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12] Length = 308 Score = 97.1 bits (241), Expect = 8e-19, Method: Composition-based stats. Identities = 32/147 (21%), Positives = 63/147 (42%), Gaps = 10/147 (6%) Query: 25 QALYQI----DIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRK 80 Q+LY +I+ + I +E + + + D E+ R + + Sbjct: 167 QSLY-WNDDKEIVDTFVLKTIKRFEEKQGA--NQPLLPEFKDDEDQEFARRLFRRAILNA 223 Query: 81 QHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYG 140 + LIS T+ W R+ + I++ + E++ ++PV V ++EYV IA + Sbjct: 224 DYYRHLISEN-TKNWDLDRVAFMDVIIMQCALAEILSFPNIPVSVSLNEYVEIAKLYSTV 282 Query: 141 DEPKFINAVLDKVSRKEEIKRSGCVSA 167 FIN LD + ++K+ G ++ Sbjct: 283 KSGSFINGTLDGIV--NQLKKEGKLTK 307 >gi|253563478|ref|ZP_04840935.1| conserved hypothetical protein [Bacteroides sp. 3_2_5] gi|265762654|ref|ZP_06091222.1| conserved hypothetical protein [Bacteroides sp. 2_1_16] gi|251947254|gb|EES87536.1| conserved hypothetical protein [Bacteroides sp. 3_2_5] gi|263255262|gb|EEZ26608.1| conserved hypothetical protein [Bacteroides sp. 2_1_16] Length = 308 Score = 97.1 bits (241), Expect = 8e-19, Method: Composition-based stats. Identities = 32/147 (21%), Positives = 63/147 (42%), Gaps = 10/147 (6%) Query: 25 QALYQI----DIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRK 80 Q+LY +I+ + I +E + + + D E+ R + + Sbjct: 167 QSLY-WNDDKEIVDTFVLKTIKRFEEKQGA--NQPLLPEFKDDEDQEFARRLFRRAILNA 223 Query: 81 QHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYG 140 + LIS T+ W R+ + I++ + E++ ++PV V ++EYV IA + Sbjct: 224 DYYRHLISEN-TKNWDLDRVAFMDVIIMQCALAEILSFPNIPVSVSLNEYVEIAKLYSTV 282 Query: 141 DEPKFINAVLDKVSRKEEIKRSGCVSA 167 FIN LD + ++K+ G ++ Sbjct: 283 KSGSFINGTLDGIV--NQLKKEGKLTK 307 >gi|332877528|ref|ZP_08445275.1| transcription antitermination factor NusB [Capnocytophaga sp. oral taxon 329 str. F0087] gi|332684634|gb|EGJ57484.1| transcription antitermination factor NusB [Capnocytophaga sp. oral taxon 329 str. F0087] Length = 310 Score = 96.7 bits (240), Expect = 9e-19, Method: Composition-based stats. Identities = 31/131 (23%), Positives = 63/131 (48%), Gaps = 3/131 (2%) Query: 32 IIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCL 91 I+ + I ++ + AD EL E D E+ + + ++ LIS Sbjct: 177 IVDTFVLKTIKRFDEAK-GADQELLPE-FKDEEDREFAHRLFRNTLLNAEYYRKLISDN- 233 Query: 92 TEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLD 151 T+ W F+R+ ++ I++ + E++ ++P+ V ++EYV IA + ++N +LD Sbjct: 234 TKNWEFNRIALMDLLIMQIALAEILTFPNIPLNVSLNEYVDIAKIYSTPRSGAYVNGLLD 293 Query: 152 KVSRKEEIKRS 162 VS+K ++ Sbjct: 294 AVSKKLVAEKK 304 >gi|302345746|ref|YP_003814099.1| transcription antitermination factor NusB [Prevotella melaninogenica ATCC 25845] gi|302149617|gb|ADK95879.1| transcription antitermination factor NusB [Prevotella melaninogenica ATCC 25845] Length = 333 Score = 96.7 bits (240), Expect = 9e-19, Method: Composition-based stats. Identities = 28/125 (22%), Positives = 55/125 (44%), Gaps = 3/125 (2%) Query: 31 DIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSC 90 +++ + I ++ AD EL E D ++ + + +S Sbjct: 150 EVVDTFVIKTIKRFDPAN-GADQELLPE-YRDEEDRDFALKLFRSTILNADDYQRYMSES 207 Query: 91 LTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVL 150 + W FSRL + I++ + E++ ++PV V I+EYV +A + +IN +L Sbjct: 208 -SRNWDFSRLAYMDVVIMQIAIAEMLTFPNIPVTVTINEYVDLAKLYSTPRSGGYINGML 266 Query: 151 DKVSR 155 D ++R Sbjct: 267 DTIAR 271 >gi|160887367|ref|ZP_02068370.1| hypothetical protein BACOVA_05386 [Bacteroides ovatus ATCC 8483] gi|237722651|ref|ZP_04553132.1| conserved hypothetical protein [Bacteroides sp. 2_2_4] gi|299148943|ref|ZP_07042005.1| NusB family protein [Bacteroides sp. 3_1_23] gi|156107778|gb|EDO09523.1| hypothetical protein BACOVA_05386 [Bacteroides ovatus ATCC 8483] gi|229448461|gb|EEO54252.1| conserved hypothetical protein [Bacteroides sp. 2_2_4] gi|298513704|gb|EFI37591.1| NusB family protein [Bacteroides sp. 3_1_23] Length = 308 Score = 96.7 bits (240), Expect = 9e-19, Method: Composition-based stats. Identities = 34/147 (23%), Positives = 66/147 (44%), Gaps = 10/147 (6%) Query: 25 QALYQI----DIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRK 80 Q+LY +I+ + I ++ + A+ EL E D E+ R + + Sbjct: 167 QSLY-WNDDKEIVDTFVLKTIKRFDEKK-GANQELLPE-FKDDEDQEFARRLFRRTILNS 223 Query: 81 QHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYG 140 + L+S T+ W R+ + I++ + E++ ++PV V ++EYV IA + Sbjct: 224 DYYRHLVSEN-TKNWDLDRIAFMDVIIMQTALAEILSFPNIPVSVSLNEYVEIAKLYSTA 282 Query: 141 DEPKFINAVLDKVSRKEEIKRSGCVSA 167 FIN LD + ++K+ G ++ Sbjct: 283 KSGSFINGTLDGIV--NQLKKEGKLTK 307 >gi|195953014|ref|YP_002121304.1| NusB antitermination factor [Hydrogenobaculum sp. Y04AAS1] gi|195932626|gb|ACG57326.1| NusB antitermination factor [Hydrogenobaculum sp. Y04AAS1] Length = 139 Score = 96.7 bits (240), Expect = 9e-19, Method: Composition-based stats. Identities = 37/141 (26%), Positives = 58/141 (41%), Gaps = 10/141 (7%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 R AR A ++LY DI G + I E + ++ +I Sbjct: 5 RARAREIAFRSLYAWDISGGEISIISQEIINMS---------KPPLKKDSQKYTLLITKK 55 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135 + ++ID I+S L E W+ L I +ILR EL+ I +Y+ IA Sbjct: 56 FGENIENIDKKIASYL-ENWNLDDLGSIEKAILRTAFTELLYIKPKKNIQAIIDYIEIAS 114 Query: 136 DFFYGDEPKFINAVLDKVSRK 156 ++ P FIN +L K+S+ Sbjct: 115 NYGNKKTPSFINGILSKLSKD 135 >gi|119357565|ref|YP_912209.1| sun protein [Chlorobium phaeobacteroides DSM 266] gi|119354914|gb|ABL65785.1| sun protein [Chlorobium phaeobacteroides DSM 266] Length = 444 Score = 96.7 bits (240), Expect = 9e-19, Method: Composition-based stats. Identities = 33/139 (23%), Positives = 58/139 (41%), Gaps = 13/139 (9%) Query: 19 ARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMD 78 AR AA++AL I+ + I+ + D +++GV+ Sbjct: 3 AREAALKALQAIEPGKEKSDRIVHAILDR-----------ATMNRQDRALTTELVNGVLR 51 Query: 79 RKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFF 138 ++ ID +IS F + +L +ILR GV +L+ +P +SE V +A + Sbjct: 52 MRKKIDFIISKFYHH--RFEKAAPVLQNILRLGVYQLLFLEKIPEWAAVSECVDLARKYK 109 Query: 139 YGDEPKFINAVLDKVSRKE 157 K +N VL K++ Sbjct: 110 GERMAKLVNGVLRKITPDN 128 >gi|2766598|gb|AAB95441.1| NUSB [Shigella flexneri] Length = 101 Score = 96.7 bits (240), Expect = 1e-18, Method: Composition-based stats. Identities = 23/104 (22%), Positives = 43/104 (41%), Gaps = 13/104 (12%) Query: 21 LAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRK 80 AVQALY + ++ ++ E VD+ +FR ++ GV + Sbjct: 11 ECAVQALYSWQLSQNDIADVEYQFLA-----------EQDVKDVDVLYFRELLAGVATKT 59 Query: 81 QHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVE 124 ++D L+ L+ L + ++LR + EL + VP + Sbjct: 60 AYLDGLMKPYLSR--LLEELGQVEKAVLRIALYELSKRSDVPYK 101 >gi|121533700|ref|ZP_01665527.1| sun protein [Thermosinus carboxydivorans Nor1] gi|121307691|gb|EAX48606.1| sun protein [Thermosinus carboxydivorans Nor1] Length = 442 Score = 96.7 bits (240), Expect = 1e-18, Method: Composition-based stats. Identities = 28/140 (20%), Positives = 61/140 (43%), Gaps = 13/140 (9%) Query: 19 ARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMD 78 AR A++ + ++DI G +++ + R D D + +++G + Sbjct: 3 AREVALKVINRVDIDGAYANIALAQEMSQRDLTDR-----------DRRFITELVYGTVK 51 Query: 79 RKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFF 138 +D ++S + ++ ++ +ILR G+ ++ +PV +E V +A + Sbjct: 52 AGATLDWILSHYSSR--PLDKIHPVIRNILRMGIYQIFFLSRIPVSAACNEAVKLAQKYG 109 Query: 139 YGDEPKFINAVLDKVSRKEE 158 + KF+NAVL R + Sbjct: 110 HAGTVKFVNAVLRSAGRSPD 129 >gi|53712491|ref|YP_098483.1| putative nitrogen utilization substance protein [Bacteroides fragilis YCH46] gi|52215356|dbj|BAD47949.1| putative nitrogen utilization substance protein [Bacteroides fragilis YCH46] Length = 258 Score = 96.7 bits (240), Expect = 1e-18, Method: Composition-based stats. Identities = 32/147 (21%), Positives = 63/147 (42%), Gaps = 10/147 (6%) Query: 25 QALYQI----DIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRK 80 Q+LY +I+ + I +E + + + D E+ R + + Sbjct: 117 QSLY-WNDDKEIVDTFVLKTIKRFEEKQGA--NQPLLPEFKDDEDQEFARRLFRRAILNA 173 Query: 81 QHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYG 140 + LIS T+ W R+ + I++ + E++ ++PV V ++EYV IA + Sbjct: 174 DYYRHLISEN-TKNWDLDRVAFMDVIIMQCALAEILSFPNIPVSVSLNEYVEIAKLYSTV 232 Query: 141 DEPKFINAVLDKVSRKEEIKRSGCVSA 167 FIN LD + ++K+ G ++ Sbjct: 233 KSGSFINGTLDGIV--NQLKKEGKLTK 257 >gi|153807762|ref|ZP_01960430.1| hypothetical protein BACCAC_02045 [Bacteroides caccae ATCC 43185] gi|149129371|gb|EDM20585.1| hypothetical protein BACCAC_02045 [Bacteroides caccae ATCC 43185] Length = 308 Score = 96.3 bits (239), Expect = 1e-18, Method: Composition-based stats. Identities = 34/147 (23%), Positives = 66/147 (44%), Gaps = 10/147 (6%) Query: 25 QALYQI----DIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRK 80 Q+LY +I+ + I ++ + A+ EL E D E+ R + + Sbjct: 167 QSLY-WNDDKEIVDTFVLKTIKRFDEKK-GANQELLPE-FKDDEDQEFARRLFRRTILNS 223 Query: 81 QHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYG 140 + L+S T+ W R+ + I++ + E++ ++PV V ++EYV IA + Sbjct: 224 DYYRHLVSEN-TKNWELDRIAFMDVIIMQTALAEILSFPNIPVSVSLNEYVEIAKLYSTS 282 Query: 141 DEPKFINAVLDKVSRKEEIKRSGCVSA 167 FIN LD + ++K+ G ++ Sbjct: 283 KSGSFINGTLDGIV--NQLKKEGKLTK 307 >gi|325298378|ref|YP_004258295.1| NusB antitermination factor [Bacteroides salanitronis DSM 18170] gi|324317931|gb|ADY35822.1| NusB antitermination factor [Bacteroides salanitronis DSM 18170] Length = 308 Score = 96.3 bits (239), Expect = 1e-18, Method: Composition-based stats. Identities = 27/142 (19%), Positives = 59/142 (41%), Gaps = 8/142 (5%) Query: 25 QALYQI----DIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRK 80 Q+LY +I+ + I ++ + + + D ++ R + + Sbjct: 167 QSLY-WNDDKEIVDTFVLKTIKRFDPKN--GEKQELLPEFKDEEDRDFARRLFRRSILNA 223 Query: 81 QHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYG 140 + LIS + W R+ ++ I++ + E++ ++PV V ++EYV IA + Sbjct: 224 DYYRHLISEN-SRNWDLKRVAVMDVIIMQIALAEILSFPNIPVNVSLNEYVEIAKLYSTP 282 Query: 141 DEPKFINAVLDKVSRKEEIKRS 162 FIN LD + + + + Sbjct: 283 KSGGFINGTLDGIVNQLKKENK 304 >gi|150006310|ref|YP_001301054.1| putative N utilization substance protein [Bacteroides vulgatus ATCC 8482] gi|212691834|ref|ZP_03299962.1| hypothetical protein BACDOR_01329 [Bacteroides dorei DSM 17855] gi|237708040|ref|ZP_04538521.1| conserved hypothetical protein [Bacteroides sp. 9_1_42FAA] gi|237724809|ref|ZP_04555290.1| conserved hypothetical protein [Bacteroides sp. D4] gi|254885163|ref|ZP_05257873.1| conserved hypothetical protein [Bacteroides sp. 4_3_47FAA] gi|265756189|ref|ZP_06090518.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA] gi|294776295|ref|ZP_06741779.1| transcription antitermination factor NusB [Bacteroides vulgatus PC510] gi|319641350|ref|ZP_07996045.1| N utilization substance protein [Bacteroides sp. 3_1_40A] gi|149934734|gb|ABR41432.1| putative N utilization substance protein [Bacteroides vulgatus ATCC 8482] gi|212665590|gb|EEB26162.1| hypothetical protein BACDOR_01329 [Bacteroides dorei DSM 17855] gi|229437004|gb|EEO47081.1| conserved hypothetical protein [Bacteroides dorei 5_1_36/D4] gi|229457868|gb|EEO63589.1| conserved hypothetical protein [Bacteroides sp. 9_1_42FAA] gi|254837956|gb|EET18265.1| conserved hypothetical protein [Bacteroides sp. 4_3_47FAA] gi|263233780|gb|EEZ19389.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA] gi|294449882|gb|EFG18398.1| transcription antitermination factor NusB [Bacteroides vulgatus PC510] gi|317387031|gb|EFV67915.1| N utilization substance protein [Bacteroides sp. 3_1_40A] Length = 308 Score = 96.3 bits (239), Expect = 1e-18, Method: Composition-based stats. Identities = 32/142 (22%), Positives = 59/142 (41%), Gaps = 8/142 (5%) Query: 25 QALYQI----DIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRK 80 Q+LY +I+ + I ++ A EL E D ++ R + + Sbjct: 167 QSLY-WNDDKEIVDTFVLKTIKRFDEKN-GAKQELLPE-FKDEEDQDFARRLFRRTILNA 223 Query: 81 QHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYG 140 + LIS T+ W R+ + I++ + E++ ++PV V ++EYV IA + Sbjct: 224 DYYRHLISEN-TKNWDLDRVAFMDVVIMQIALAEILSFPNIPVSVSLNEYVEIAKLYSTP 282 Query: 141 DEPKFINAVLDKVSRKEEIKRS 162 FIN LD + + + Sbjct: 283 KSGGFINGTLDGIVNSLKKENK 304 >gi|37520905|ref|NP_924282.1| transcription antitermination protein NusB [Gloeobacter violaceus PCC 7421] gi|39931743|sp|Q7NKZ0|NUSB_GLOVI RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|35211900|dbj|BAC89277.1| transcription termination factor [Gloeobacter violaceus PCC 7421] Length = 211 Score = 96.3 bits (239), Expect = 1e-18, Method: Composition-based stats. Identities = 27/96 (28%), Positives = 49/96 (51%), Gaps = 1/96 (1%) Query: 66 LEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEV 125 + ++ + ++D L+ +C+ E W RL I ILR ++E++E SVP V Sbjct: 113 RAYAFELLGAFVREGDNLDKLLDTCM-EGWQVERLTRIDRDILRLALVEMVELKSVPFRV 171 Query: 126 IISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKR 161 I E V +A + +FIN VL +V + ++++ Sbjct: 172 AIDEAVELAKKYSTDTAVRFINGVLRRVVQHLQLEQ 207 >gi|120436864|ref|YP_862550.1| antitermination protein NusB [Gramella forsetii KT0803] gi|117579014|emb|CAL67483.1| antitermination protein NusB [Gramella forsetii KT0803] Length = 337 Score = 96.3 bits (239), Expect = 1e-18, Method: Composition-based stats. Identities = 23/98 (23%), Positives = 47/98 (47%), Gaps = 1/98 (1%) Query: 63 HVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVP 122 D E+ + + + + T W R+ + +++ + E ++ S+P Sbjct: 230 EEDKEFAIKLFRKTYLNDEDLSEEMLGK-TPNWDKDRIAEVDMVLIKMAICEFLKFTSIP 288 Query: 123 VEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIK 160 V+V I+EY+ IA ++ FIN VLDK+S++ + + Sbjct: 289 VKVTINEYLEIAKEYSTPKSSIFINGVLDKLSKEYQTE 326 >gi|293380300|ref|ZP_06626374.1| transcription antitermination factor NusB [Lactobacillus crispatus 214-1] gi|290923115|gb|EFE00044.1| transcription antitermination factor NusB [Lactobacillus crispatus 214-1] Length = 131 Score = 96.3 bits (239), Expect = 1e-18, Method: Composition-based stats. Identities = 25/139 (17%), Positives = 57/139 (41%), Gaps = 11/139 (7%) Query: 17 GIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGV 76 +R A+QA+Y + E E V ++ L + + +I GV Sbjct: 4 HESRKVAMQAVY---LANQEPDLTAEEVEAKV--------VATLNLKQLSAYSKKLIEGV 52 Query: 77 MDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHD 136 ++ ++++ ++S L + W R+ + +I+ + E+ + + ++E + + Sbjct: 53 LEDRKNLQSELTSHLKKGWRLERVSQTVVAIMEVALFEIKHSDEIDAKAAVNEALNLCDK 112 Query: 137 FFYGDEPKFINAVLDKVSR 155 F E FIN +L + Sbjct: 113 FAEPKEKPFINGMLANFVK 131 >gi|327183851|gb|AEA32298.1| transcription termination factor [Lactobacillus amylovorus GRL 1118] Length = 130 Score = 96.3 bits (239), Expect = 1e-18, Method: Composition-based stats. Identities = 26/138 (18%), Positives = 55/138 (39%), Gaps = 11/138 (7%) Query: 17 GIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGV 76 +R A+QA+Y + E E V ++ L + + +I GV Sbjct: 4 HESRKVAMQAIY---LANQEPDLNAEEVEAKV--------VAALNLKQLSAYSKKLIEGV 52 Query: 77 MDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHD 136 ++ + + +S L + W R+ I+ +I+ + E+ + + ++E + + + Sbjct: 53 LENRVDLQSALSEHLKKGWRLERVSQIVVAIMEVALFEIKNSDEIDPKAAVNEALNLCDE 112 Query: 137 FFYGDEPKFINAVLDKVS 154 F E FIN +L Sbjct: 113 FAEPKEKPFINGMLANFV 130 >gi|303239358|ref|ZP_07325886.1| sun protein [Acetivibrio cellulolyticus CD2] gi|302593144|gb|EFL62864.1| sun protein [Acetivibrio cellulolyticus CD2] Length = 450 Score = 96.3 bits (239), Expect = 1e-18, Method: Composition-based stats. Identities = 28/139 (20%), Positives = 63/139 (45%), Gaps = 13/139 (9%) Query: 20 RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79 R A++ LY I+ G + +++Y + +D + +++G + Sbjct: 7 RETALKILYDINKSGAYSNIALNKYLE-----------DKALSGLDKAFITELVYGTLKW 55 Query: 80 KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139 + ID +I + K ++L + +ILR GV +++ +P +E V +A + + Sbjct: 56 RLSIDYIIDQFSSVK--INKLSPWILNILRLGVYQIVYMSKIPESAACNESVNLAKRYGH 113 Query: 140 GDEPKFINAVLDKVSRKEE 158 +++NA+L V+R + Sbjct: 114 SASSRYVNAMLRNVARSKN 132 >gi|325270436|ref|ZP_08137040.1| NusB family protein [Prevotella multiformis DSM 16608] gi|324987232|gb|EGC19211.1| NusB family protein [Prevotella multiformis DSM 16608] Length = 385 Score = 96.3 bits (239), Expect = 1e-18, Method: Composition-based stats. Identities = 27/125 (21%), Positives = 54/125 (43%), Gaps = 3/125 (2%) Query: 31 DIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSC 90 +++ + I ++ D EL E D ++ + + +S Sbjct: 175 EVVDTFVIKTIKRFDPAN-GEDQELLPE-YRDEEDRDFAVKLFRATILNADDYQHYMSES 232 Query: 91 LTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVL 150 + W FSRL + I++ + E++ ++PV V I+EYV +A + +IN +L Sbjct: 233 -SRNWDFSRLAYMDVVIMQIAIAEMLTFPNIPVSVTINEYVDLAKLYSTPRSGGYINGML 291 Query: 151 DKVSR 155 D ++R Sbjct: 292 DTIAR 296 >gi|198277117|ref|ZP_03209648.1| hypothetical protein BACPLE_03325 [Bacteroides plebeius DSM 17135] gi|198269615|gb|EDY93885.1| hypothetical protein BACPLE_03325 [Bacteroides plebeius DSM 17135] Length = 308 Score = 96.3 bits (239), Expect = 1e-18, Method: Composition-based stats. Identities = 28/142 (19%), Positives = 60/142 (42%), Gaps = 8/142 (5%) Query: 25 QALYQI----DIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRK 80 Q+LY +I+ + I + + + + D ++ R + + Sbjct: 167 QSLY-WNDDKEIVDTFVLKTIKRFNPEN--GEKQELLPEFKDEEDQDFARRLFRRSILNA 223 Query: 81 QHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYG 140 + LIS ++ W SR+ ++ I++ + E++ ++PV V ++EYV IA + Sbjct: 224 DYYRHLISEN-SKNWDLSRVAVMDVIIMQIALAEILSFPNIPVNVSLNEYVEIAKLYSTP 282 Query: 141 DEPKFINAVLDKVSRKEEIKRS 162 FIN LD + + + + Sbjct: 283 KSGGFINGTLDGIVNQLKKENK 304 >gi|170077553|ref|YP_001734191.1| transcription antitermination protein NusB [Synechococcus sp. PCC 7002] gi|254772663|sp|B1XIZ3|NUSB_SYNP2 RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|169885222|gb|ACA98935.1| transcription antitermination factor NusB [Synechococcus sp. PCC 7002] Length = 213 Score = 96.3 bits (239), Expect = 1e-18, Method: Composition-based stats. Identities = 28/95 (29%), Positives = 44/95 (46%), Gaps = 2/95 (2%) Query: 68 WFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVII 127 + I+ + R I +I L W + RL + ILR V E++ P +V I Sbjct: 119 FALEILTTLRRRNDQIKEVIDGSLV-DWQYHRLPRLDRDILRIAVAEILF-LETPYKVAI 176 Query: 128 SEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRS 162 +E V +A + D +FIN VL +VS + + S Sbjct: 177 NEAVELAKRYSDEDGHRFINGVLRRVSDRLRAEDS 211 >gi|86133163|ref|ZP_01051745.1| NusB family protein [Polaribacter sp. MED152] gi|85820026|gb|EAQ41173.1| NusB family protein [Polaribacter sp. MED152] Length = 312 Score = 95.9 bits (238), Expect = 2e-18, Method: Composition-based stats. Identities = 26/94 (27%), Positives = 46/94 (48%), Gaps = 1/94 (1%) Query: 63 HVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVP 122 D ++ + M + + + I+ T W R+ I +++ + E + S+P Sbjct: 205 KDDEDFVADLFRKTMLKHKTYEQDITDK-TPNWETDRIADIDMILIKMAITEFVNFPSIP 263 Query: 123 VEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRK 156 V V I+EY+ IA D+ FIN VLDK+S++ Sbjct: 264 VRVTINEYIEIAKDYSTTKSSYFINGVLDKISKE 297 >gi|307566362|ref|ZP_07628801.1| transcription antitermination factor NusB [Prevotella amnii CRIS 21A-A] gi|307344939|gb|EFN90337.1| transcription antitermination factor NusB [Prevotella amnii CRIS 21A-A] Length = 313 Score = 95.9 bits (238), Expect = 2e-18, Method: Composition-based stats. Identities = 28/125 (22%), Positives = 57/125 (45%), Gaps = 3/125 (2%) Query: 31 DIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSC 90 +I+ + I ++ + AD EL E D ++ + + + +S Sbjct: 150 EIVDTFVVKTIKRFDPVK-GADQELLPE-FKDDEDRKFAIDLFRATIINAEVYQGYMSQA 207 Query: 91 LTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVL 150 + W FSRL + I++ + E++ ++P+ V I+EYV +A + +IN +L Sbjct: 208 -SRNWDFSRLAYMDVVIMQIAIAEMVNFPNIPINVSINEYVNLAKLYSTPRSGGYINGML 266 Query: 151 DKVSR 155 D ++R Sbjct: 267 DSIAR 271 >gi|256843408|ref|ZP_05548896.1| transcription antitermination factor NusB [Lactobacillus crispatus 125-2-CHN] gi|256614828|gb|EEU20029.1| transcription antitermination factor NusB [Lactobacillus crispatus 125-2-CHN] Length = 131 Score = 95.9 bits (238), Expect = 2e-18, Method: Composition-based stats. Identities = 25/139 (17%), Positives = 58/139 (41%), Gaps = 11/139 (7%) Query: 17 GIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGV 76 +R A+QA+Y + E E V ++ L + + +I GV Sbjct: 4 HESRKVAMQAVY---LANQEPDLTAEEVEAKV--------VATLNLKQLSAYSKKLIEGV 52 Query: 77 MDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHD 136 ++ ++++ ++S L + W R+ + +I+ + E+ + + ++E + + + Sbjct: 53 LEDRKNLQSELTSHLKKGWRLERVSQTVVAIMEVALFEIKHSDEIDAKAAVNEALNLCDE 112 Query: 137 FFYGDEPKFINAVLDKVSR 155 F E FIN +L + Sbjct: 113 FAEPKEKPFINGMLANFVK 131 >gi|110598393|ref|ZP_01386666.1| sun protein:transcription antitermination factor NusB [Chlorobium ferrooxidans DSM 13031] gi|110340002|gb|EAT58504.1| sun protein:transcription antitermination factor NusB [Chlorobium ferrooxidans DSM 13031] Length = 447 Score = 95.9 bits (238), Expect = 2e-18, Method: Composition-based stats. Identities = 29/139 (20%), Positives = 61/139 (43%), Gaps = 13/139 (9%) Query: 18 IARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVM 77 AR A+ L ++ + +I+ +R + L+ +D +++GV+ Sbjct: 3 TARETALNVLQALETGKKRSDQIL-----HRTLEQSALN------RIDRALATGLVNGVL 51 Query: 78 DRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDF 137 + +D +IS K + +L +ILR G+ +++ VP ++E V +A + Sbjct: 52 RYRLQLDFIISRYYHHK--LEKAAPVLKNILRLGLYQILFLDKVPDWAAVNECVKLAKKY 109 Query: 138 FYGDEPKFINAVLDKVSRK 156 K +N VL K++ + Sbjct: 110 KGDRMSKLVNGVLRKITPQ 128 >gi|325858411|ref|ZP_08172573.1| transcription antitermination factor NusB [Prevotella denticola CRIS 18C-A] gi|325483049|gb|EGC86037.1| transcription antitermination factor NusB [Prevotella denticola CRIS 18C-A] Length = 359 Score = 95.6 bits (237), Expect = 2e-18, Method: Composition-based stats. Identities = 27/127 (21%), Positives = 52/127 (40%), Gaps = 7/127 (5%) Query: 35 CSTTEIISEYETY---RFCADTELDVE---SVYLHVDLEWFRVIIHGVMDRKQHIDLLIS 88 E++ + RF + D E D ++ + + +S Sbjct: 171 NDDKEVVDTFVIKTIKRFDPANKEDQELLPEYRDEEDRDFAVKLFRATILNADDYQHYMS 230 Query: 89 SCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINA 148 + W FSRL + I++ + E++ ++PV V I+EYV +A + +IN Sbjct: 231 ES-SRNWDFSRLAYMDVIIMQIAIAEMLTFPNIPVTVTINEYVDLAKLYSTPRSGGYING 289 Query: 149 VLDKVSR 155 +LD ++R Sbjct: 290 MLDTIAR 296 >gi|294673022|ref|YP_003573638.1| transcription antitermination factor NusB [Prevotella ruminicola 23] gi|294473573|gb|ADE82962.1| transcription antitermination factor NusB [Prevotella ruminicola 23] Length = 282 Score = 95.6 bits (237), Expect = 2e-18, Method: Composition-based stats. Identities = 30/135 (22%), Positives = 55/135 (40%), Gaps = 6/135 (4%) Query: 25 QALYQID---IIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQ 81 Q+LY D I+ + I ++ L D + R + + Sbjct: 120 QSLYWNDDKTIVDTFVLKTIKRFDEANGPKQDLLPEWDSEEEKD--FARKVFRAAIMNAD 177 Query: 82 HIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGD 141 +S + W FSRL + +++ + E++ +VP+ V I+EYV IA + Sbjct: 178 EYQRYMSEA-SRNWDFSRLAYMDIILMQIAIAEMMTLPNVPISVTINEYVEIAKFYSTPK 236 Query: 142 EPKFINAVLDKVSRK 156 +IN +LD ++R Sbjct: 237 SAGYINGMLDGIARN 251 >gi|327313923|ref|YP_004329360.1| transcription antitermination factor NusB [Prevotella denticola F0289] gi|326944316|gb|AEA20201.1| transcription antitermination factor NusB [Prevotella denticola F0289] Length = 359 Score = 95.6 bits (237), Expect = 2e-18, Method: Composition-based stats. Identities = 27/127 (21%), Positives = 52/127 (40%), Gaps = 7/127 (5%) Query: 35 CSTTEIISEYETY---RFCADTELDVE---SVYLHVDLEWFRVIIHGVMDRKQHIDLLIS 88 E++ + RF + D E D ++ + + +S Sbjct: 171 NDDKEVVDTFVIKTIKRFDPANKEDQELLPEYRDEEDRDFAVKLFRATILNADDYQHYMS 230 Query: 89 SCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINA 148 + W FSRL + I++ + E++ ++PV V I+EYV +A + +IN Sbjct: 231 ES-SRNWDFSRLAYMDVIIMQIAIAEMLTFPNIPVTVTINEYVDLAKLYSTPRSGGYING 289 Query: 149 VLDKVSR 155 +LD ++R Sbjct: 290 MLDTIAR 296 >gi|323466274|gb|ADX69961.1| Transcriptional termination factor [Lactobacillus helveticus H10] Length = 150 Score = 95.6 bits (237), Expect = 2e-18, Method: Composition-based stats. Identities = 26/139 (18%), Positives = 58/139 (41%), Gaps = 13/139 (9%) Query: 17 GIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVY-LHVDLEWFRVIIHG 75 +R A+QA+Y ++ E D E V + L + + +I G Sbjct: 24 HESRKVAMQAVY------------LANQEPDLSAEDVEAKVVATLNLKQLSAYSKKLIEG 71 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135 V++ ++ + +++ L + W R+ I+ +I+ + E+ + + ++E + + Sbjct: 72 VLENREDLQSELTNHLKKGWHLERVSQIVVAIMEVALFEIKNSDEIDPKAAVNEALNLCD 131 Query: 136 DFFYGDEPKFINAVLDKVS 154 +F E FIN +L Sbjct: 132 EFAEPKEKPFINGMLANFV 150 >gi|313124106|ref|YP_004034365.1| transcription termination factor [Lactobacillus delbrueckii subsp. bulgaricus ND02] gi|312280669|gb|ADQ61388.1| Transcription termination factor [Lactobacillus delbrueckii subsp. bulgaricus ND02] Length = 110 Score = 95.6 bits (237), Expect = 2e-18, Method: Composition-based stats. Identities = 18/90 (20%), Positives = 41/90 (45%) Query: 67 EWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVI 126 + + ++ GV+D++ + +S+ L + W RL +IL + E++ + Sbjct: 21 AYSQELVSGVIDKQTELRDKLSANLKQGWRLERLSKTSLAILEVALYEMLYSPVIEDRSA 80 Query: 127 ISEYVCIAHDFFYGDEPKFINAVLDKVSRK 156 I+E + + +F FIN +L ++ Sbjct: 81 INEALNLCDEFDDPKSKAFINGILANFVQE 110 >gi|323435897|ref|ZP_01048839.2| NusB family protein [Dokdonia donghaensis MED134] gi|321496212|gb|EAQ40073.2| NusB family protein [Dokdonia donghaensis MED134] Length = 314 Score = 95.6 bits (237), Expect = 2e-18, Method: Composition-based stats. Identities = 20/99 (20%), Positives = 50/99 (50%), Gaps = 1/99 (1%) Query: 63 HVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVP 122 D+ + ++ + + + I+ T W R+ + +++ + E ++ ++P Sbjct: 207 EEDVHFGTELLEKTVANETFLANEITEN-TPNWDKERIADVDMVLIKMALCEFLKFPTIP 265 Query: 123 VEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKR 161 V+V I+EY+ I+ ++ FIN +LDK+ ++ E ++ Sbjct: 266 VKVTINEYLEISKEYSTPKSSIFINGILDKLVKQYEREK 304 >gi|228473251|ref|ZP_04058006.1| NusB family protein [Capnocytophaga gingivalis ATCC 33624] gi|228275401|gb|EEK14193.1| NusB family protein [Capnocytophaga gingivalis ATCC 33624] Length = 310 Score = 95.2 bits (236), Expect = 2e-18, Method: Composition-based stats. Identities = 26/132 (19%), Positives = 56/132 (42%), Gaps = 9/132 (6%) Query: 40 IISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEK---WS 96 I+ + + D ++ ++ + D L EK W Sbjct: 180 IVKILKGLSEGGVADFLPPLFKDKSDKDFAIELLRKAVLN----DEAFHKYLVEKTPKWD 235 Query: 97 FSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRK 156 R+ + +++ G+ E ++ S+PV+V ++EYV IA ++ F+N +LD +S+ Sbjct: 236 ADRIAELDAIMIKMGIAEFLKFPSIPVKVTLNEYVEIAKEYSTPKSSVFVNGILDTLSK- 294 Query: 157 EEIKRSGCVSAI 168 + ++ G + I Sbjct: 295 -DFQQEGKLKKI 305 >gi|169831743|ref|YP_001717725.1| sun protein [Candidatus Desulforudis audaxviator MP104C] gi|169638587|gb|ACA60093.1| sun protein [Candidatus Desulforudis audaxviator MP104C] Length = 452 Score = 95.2 bits (236), Expect = 2e-18, Method: Composition-based stats. Identities = 27/140 (19%), Positives = 51/140 (36%), Gaps = 13/140 (9%) Query: 19 ARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMD 78 AR A+ L ++ G ++ E +D + + +G + Sbjct: 6 AREIALHVLKAVEADGAYANLALNRALE-----------EFRPSKLDRAFATELAYGTLR 54 Query: 79 RKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFF 138 +D ++S L + + +ILR G +L VP E V +A + Sbjct: 55 TLNTLDWIVSRYLQQ--PLGDQTVWSRNILRLGAYQLFYMDKVPAGAACFEAVELAKKYG 112 Query: 139 YGDEPKFINAVLDKVSRKEE 158 +F+N VL V+R ++ Sbjct: 113 TPGTARFVNGVLRNVARHKD 132 >gi|258515525|ref|YP_003191747.1| sun protein [Desulfotomaculum acetoxidans DSM 771] gi|257779230|gb|ACV63124.1| sun protein [Desulfotomaculum acetoxidans DSM 771] Length = 452 Score = 95.2 bits (236), Expect = 3e-18, Method: Composition-based stats. Identities = 29/140 (20%), Positives = 59/140 (42%), Gaps = 13/140 (9%) Query: 19 ARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMD 78 AR A+ L +D G +++ R + +D + +++G + Sbjct: 6 AREMALIVLKAVDQEGAYANIALNQVLEQR-----------DFNKLDRAFTTELVYGTLR 54 Query: 79 RKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFF 138 +D +++ L S + +ILR G +L+ H VP +E ++H + Sbjct: 55 ALNTVDWVLAQFLKH--PLSSQTAWIRNILRLGTYQLLFMHRVPASAACNEAAKLSHKYG 112 Query: 139 YGDEPKFINAVLDKVSRKEE 158 + + KF+N VL ++R+ E Sbjct: 113 HKGQVKFVNGVLRNIARQHE 132 >gi|313886911|ref|ZP_07820614.1| transcription antitermination factor NusB [Porphyromonas asaccharolytica PR426713P-I] gi|312923608|gb|EFR34414.1| transcription antitermination factor NusB [Porphyromonas asaccharolytica PR426713P-I] Length = 347 Score = 95.2 bits (236), Expect = 3e-18, Method: Composition-based stats. Identities = 22/105 (20%), Positives = 49/105 (46%), Gaps = 3/105 (2%) Query: 61 YLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHS 120 + D + ++ + ++ D +++ L W R+ ++ ++ V E + C Sbjct: 244 HSDRDRLYAHQLLSETLLHREEYDAMLTPRLD-NWEQDRVALVDMILMEMAVAEALNCPD 302 Query: 121 VPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRSGCV 165 + + V I+EY+ +A + FINAVLD++ ++K G + Sbjct: 303 IALVVTINEYIELAKVYDNSKSASFINAVLDRLF--TDLKSEGKL 345 >gi|193214990|ref|YP_001996189.1| sun protein [Chloroherpeton thalassium ATCC 35110] gi|193088467|gb|ACF13742.1| sun protein [Chloroherpeton thalassium ATCC 35110] Length = 443 Score = 95.2 bits (236), Expect = 3e-18, Method: Composition-based stats. Identities = 31/141 (21%), Positives = 59/141 (41%), Gaps = 13/141 (9%) Query: 18 IARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVM 77 AR AVQAL ++++ + ++ + + + VD + I++G + Sbjct: 3 KAREIAVQALREVEVNHAKSDTALNHFFSI-----------TALEPVDRAFTMQIVYGTL 51 Query: 78 DRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDF 137 K ID +I + ++D+ + +ILR G +L+ VP ++E V +A Sbjct: 52 REKMKIDHVIKQFYRH--DYDKMDIDVKNILRIGAYQLLFLSKVPRWAAVNESVELAKKL 109 Query: 138 FYGDEPKFINAVLDKVSRKEE 158 +N VL +S E Sbjct: 110 KGQFLGNLVNGVLRNISNNLE 130 >gi|46447257|ref|YP_008622.1| putative transcription termination factor, nusB [Candidatus Protochlamydia amoebophila UWE25] gi|46400898|emb|CAF24347.1| putative transcription termination factor, nusB [Candidatus Protochlamydia amoebophila UWE25] Length = 154 Score = 95.2 bits (236), Expect = 3e-18, Method: Composition-based stats. Identities = 26/104 (25%), Positives = 55/104 (52%), Gaps = 1/104 (0%) Query: 58 ESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIE 117 E ++ + + ++ + ID ISS ++ + F+R+ + +ILR GV EL Sbjct: 8 ELSISKKNVRLAQEKVQKIVVQLAEIDSKISS-VSLSYHFNRIQTVTKNILRLGVFELFF 66 Query: 118 CHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKR 161 +P +V+I+E + ++ F + F+NA+LD++ +K + + Sbjct: 67 ETDIPQKVVIAEAIRLSRKFSTPESASFVNALLDQLYQKSKGEE 110 >gi|295132726|ref|YP_003583402.1| antitermination protein NusB [Zunongwangia profunda SM-A87] gi|294980741|gb|ADF51206.1| antitermination protein NusB [Zunongwangia profunda SM-A87] Length = 303 Score = 95.2 bits (236), Expect = 3e-18, Method: Composition-based stats. Identities = 28/104 (26%), Positives = 50/104 (48%), Gaps = 3/104 (2%) Query: 65 DLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVE 124 D E+ + + + + T W R+ I +L+ + E +E S+PV+ Sbjct: 198 DKEFAVNLFRKTYLKDGKLSNEMQGK-TPNWDKDRIAEIDTVLLKMAICEFLEFPSIPVK 256 Query: 125 VIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRSGCVSAI 168 V I+EY+ I+ ++ FIN +LDK+S+ E K G ++ I Sbjct: 257 VTINEYLEISKEYSTPKSSIFINGILDKLSK--EYKTDGKLNKI 298 >gi|68171632|ref|ZP_00544999.1| N utilization substance protein B, putative [Ehrlichia chaffeensis str. Sapulpa] gi|88658441|ref|YP_507582.1| putative N utilization substance protein B [Ehrlichia chaffeensis str. Arkansas] gi|67998953|gb|EAM85637.1| N utilization substance protein B, putative [Ehrlichia chaffeensis str. Sapulpa] gi|88599898|gb|ABD45367.1| putative N utilization substance protein B [Ehrlichia chaffeensis str. Arkansas] Length = 174 Score = 94.8 bits (235), Expect = 3e-18, Method: Composition-based stats. Identities = 37/142 (26%), Positives = 67/142 (47%), Gaps = 6/142 (4%) Query: 12 LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71 ++ R A+Q Y + + +I + + E+ + +D + Sbjct: 11 WHSKKTTTRFLAIQGTYSMIFNNYTINDIDNLIDYL-----YEMKEVLDLIQIDNQLLLK 65 Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131 I++ ++ I+ I++ L EKWS R+++I SI++ V ELI C +II+EYV Sbjct: 66 IMNTMLLTFNTINSTIATFLNEKWSIDRINLISLSIIKTAVCELI-CSDTDAVIIINEYV 124 Query: 132 CIAHDFFYGDEPKFINAVLDKV 153 IA + FINA+L++V Sbjct: 125 NIASHILERTDVNFINAILNQV 146 >gi|227878894|ref|ZP_03996799.1| transcriptional termination factor [Lactobacillus crispatus JV-V01] gi|256849770|ref|ZP_05555201.1| transcriptional termination factor [Lactobacillus crispatus MV-1A-US] gi|262046531|ref|ZP_06019492.1| transcriptional antitermination factor NusB [Lactobacillus crispatus MV-3A-US] gi|295693204|ref|YP_003601814.1| transcription termination factor [Lactobacillus crispatus ST1] gi|227861528|gb|EEJ69142.1| transcriptional termination factor [Lactobacillus crispatus JV-V01] gi|256713259|gb|EEU28249.1| transcriptional termination factor [Lactobacillus crispatus MV-1A-US] gi|260572980|gb|EEX29539.1| transcriptional antitermination factor NusB [Lactobacillus crispatus MV-3A-US] gi|295031310|emb|CBL50789.1| Transcription termination factor [Lactobacillus crispatus ST1] Length = 131 Score = 94.8 bits (235), Expect = 3e-18, Method: Composition-based stats. Identities = 25/139 (17%), Positives = 58/139 (41%), Gaps = 11/139 (7%) Query: 17 GIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGV 76 +R A+QA+Y + E E V ++ L + + +I GV Sbjct: 4 HESRKVAMQAVY---LANQEPDLTAEEVEAKV--------VATLNLKQLSAYSKKLIEGV 52 Query: 77 MDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHD 136 ++ ++++ ++S L + W R+ + +I+ + E+ + + ++E + + + Sbjct: 53 LEDRKNLQSELTSHLKKGWRLERVSQTVVAIMEVALFEINHSDEIDAKAAVNEALNLCDE 112 Query: 137 FFYGDEPKFINAVLDKVSR 155 F E FIN +L + Sbjct: 113 FAEPKEKPFINGMLANFVK 131 >gi|315651135|ref|ZP_07904167.1| rRNA (cytosine-5-)-methyltransferase [Eubacterium saburreum DSM 3986] gi|315486600|gb|EFU76950.1| rRNA (cytosine-5-)-methyltransferase [Eubacterium saburreum DSM 3986] Length = 444 Score = 94.8 bits (235), Expect = 4e-18, Method: Composition-based stats. Identities = 34/139 (24%), Positives = 63/139 (45%), Gaps = 14/139 (10%) Query: 20 RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79 R ++AL ID+ G + ++I D L+ S D +F ++HGV++ Sbjct: 7 RTLILEALMLIDVEGEYSHKVI----------DMALEKYSYLSKADRGFFSKVVHGVVEY 56 Query: 80 KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139 + +D +I K R+ ++ ILR + +++ VP II+E V + Sbjct: 57 RLQLDFIIKKYNGGK----RIKPVIREILRMAIYQILYMDRVPDRAIINEAVNLVKLRRL 112 Query: 140 GDEPKFINAVLDKVSRKEE 158 F+N +L K+S ++E Sbjct: 113 TALTGFVNGILRKISSEKE 131 >gi|312899118|ref|ZP_07758496.1| NusB family protein [Megasphaera micronuciformis F0359] gi|310619785|gb|EFQ03367.1| NusB family protein [Megasphaera micronuciformis F0359] Length = 166 Score = 94.8 bits (235), Expect = 4e-18, Method: Composition-based stats. Identities = 24/124 (19%), Positives = 50/124 (40%), Gaps = 6/124 (4%) Query: 36 STTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKW 95 + E E TE + E+ + ++ V + + ++ LI + + W Sbjct: 48 DAHAVPFESEDEVLSEATEDNSENDT----NSYCEYLVSTVSEHGEELNDLIRTY-AKGW 102 Query: 96 SFSRLDMILCSILRAGVLELIECHS-VPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVS 154 +++ +I++ E + + +II+E V +A F D KF+N +L + Sbjct: 103 DLRQMNKADKTIMKMAFCEFVYPKEKLASAIIINEAVLLAKQFGGADSSKFVNGILGAYA 162 Query: 155 RKEE 158 R E Sbjct: 163 RTHE 166 >gi|291542594|emb|CBL15704.1| ribosomal RNA small subunit methyltransferase RsmB [Ruminococcus bromii L2-63] Length = 446 Score = 94.8 bits (235), Expect = 4e-18, Method: Composition-based stats. Identities = 30/118 (25%), Positives = 54/118 (45%), Gaps = 2/118 (1%) Query: 41 ISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRL 100 I Y A E+ VD + +++GV++R+ +D +I S K ++ Sbjct: 15 IENEGAYSNIALNNAIKENRLSGVDSSFVSALVYGVLERRITLDYIIRSY--SKIPLRKI 72 Query: 101 DMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEE 158 + +ILR G+L+L+ VP ++E V +A FIN +L ++R E+ Sbjct: 73 ETKTKNILRLGILQLLFMDKVPDSAAVNESVNLAKKHKLQKSSGFINGILRNITRAED 130 >gi|86605070|ref|YP_473833.1| transcription antitermination protein NusB [Synechococcus sp. JA-3-3Ab] gi|119390839|sp|Q2JQT6|NUSB_SYNJA RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|86553612|gb|ABC98570.1| transcription antitermination factor NusB [Synechococcus sp. JA-3-3Ab] Length = 288 Score = 94.8 bits (235), Expect = 4e-18, Method: Composition-based stats. Identities = 32/138 (23%), Positives = 52/138 (37%), Gaps = 9/138 (6%) Query: 25 QALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLH--------VDLEWFRVIIHGV 76 QAL ++ S I+ E A L V + ++ + Sbjct: 132 QALEHLEQRLYSVRRILDEVVQLSQKAVNRLGVALSMPELLHIAQAQEVRAYALQLLTAL 191 Query: 77 MDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHD 136 K+ ID + L W R+ I ILR V+E+ S P +V I+E V +A Sbjct: 192 RTHKEAIDARLQGVLV-GWQLKRVGRIERDILRLAVVEMEILRSSPDKVAINEAVELAKK 250 Query: 137 FFYGDEPKFINAVLDKVS 154 + + F+N VL ++ Sbjct: 251 YGDPEAAAFVNGVLRRLV 268 >gi|330995945|ref|ZP_08319840.1| transcription antitermination factor NusB [Paraprevotella xylaniphila YIT 11841] gi|329574284|gb|EGG55859.1| transcription antitermination factor NusB [Paraprevotella xylaniphila YIT 11841] Length = 310 Score = 94.8 bits (235), Expect = 4e-18, Method: Composition-based stats. Identities = 24/99 (24%), Positives = 49/99 (49%), Gaps = 1/99 (1%) Query: 58 ESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIE 117 D E+ + + ++ LIS T+ W F+R+ ++ I++ + E++ Sbjct: 201 PEFKDEEDREFAHRLFRNTLLNAEYYRKLISDN-TKNWEFNRIALMDLLIMQIALAEILT 259 Query: 118 CHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRK 156 ++P+ V ++EYV IA + ++N +LD VS+K Sbjct: 260 FPNIPLNVSLNEYVDIAKIYSTPRSGAYVNGLLDAVSKK 298 >gi|297571422|ref|YP_003697196.1| NusB antitermination factor [Arcanobacterium haemolyticum DSM 20595] gi|296931769|gb|ADH92577.1| NusB antitermination factor [Arcanobacterium haemolyticum DSM 20595] Length = 159 Score = 94.4 bits (234), Expect = 4e-18, Method: Composition-based stats. Identities = 31/166 (18%), Positives = 76/166 (45%), Gaps = 13/166 (7%) Query: 1 MTIQDNKKDLKLSHR--RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVE 58 M+ ++ + + + R R + R A+ LY+ D+ G ++ S E + ++ ++ Sbjct: 1 MSNEERTQQRRNNGRKGRSLQRQRALDVLYEADVRGAE-HDLASLLEERSQLSPSQQPIQ 59 Query: 59 SVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIEC 118 ++ ++I+ + +D +I + + +W+ +R+ ++ ++LR G EL+ Sbjct: 60 --------KYGQLIVSTYAEWADDVDSMIEAA-SPQWALARMSVVDRNLLRIGATELMY- 109 Query: 119 HSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRSGC 164 VP +++ E + DF F VL++++ + SG Sbjct: 110 LDVPTAIVVKEITALVRDFSTDKAVGFTMGVLNRIAEIRSEETSGR 155 >gi|34540589|ref|NP_905068.1| NusB family protein [Porphyromonas gingivalis W83] gi|34396902|gb|AAQ65967.1| NusB family protein [Porphyromonas gingivalis W83] Length = 364 Score = 94.4 bits (234), Expect = 5e-18, Method: Composition-based stats. Identities = 30/139 (21%), Positives = 55/139 (39%), Gaps = 7/139 (5%) Query: 28 YQIDIIGCSTTEIISEYE---TYRFCADTELDV---ESVYLHVDLEWFRVIIHGVMDRKQ 81 YQ + EI+ E+ R DT+ + D + ++ + Q Sbjct: 222 YQTIRQENAPIEIVKEFVLKTIRRIEQDTDPSAILLPAYKEKDDAVFGTTLLRNAIINGQ 281 Query: 82 HIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGD 141 +I L W R+ + I++ + EL+ ++PV V I+EY+ ++ F Sbjct: 282 EYRHIIRENLI-NWEVDRIADMDMLIMQLAIAELLHFPNIPVLVTINEYIDLSKLFSTPK 340 Query: 142 EPKFINAVLDKVSRKEEIK 160 F+N +LD V + K Sbjct: 341 SGTFVNGLLDAVVKSLREK 359 >gi|270339970|ref|ZP_06006596.2| NusB family protein [Prevotella bergensis DSM 17361] gi|270333141|gb|EFA43927.1| NusB family protein [Prevotella bergensis DSM 17361] Length = 369 Score = 94.4 bits (234), Expect = 5e-18, Method: Composition-based stats. Identities = 25/125 (20%), Positives = 48/125 (38%), Gaps = 3/125 (2%) Query: 31 DIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSC 90 DI+ + I + L D ++ + + +S Sbjct: 175 DIVDTFVVKTIKRFAPENRSKQDLLPEYKD--EEDKDFACKLFRATILNADDYHRYMSET 232 Query: 91 LTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVL 150 + W FSRL + I++ + E++ ++P V I+EYV +A + +IN +L Sbjct: 233 -SRNWDFSRLAYMDVVIMQIAIAEMLTFPNIPATVTINEYVELAKLYSTPRSGAYINGML 291 Query: 151 DKVSR 155 D + R Sbjct: 292 DSIGR 296 >gi|227893296|ref|ZP_04011101.1| transcription termination [Lactobacillus ultunensis DSM 16047] gi|227864876|gb|EEJ72297.1| transcription termination [Lactobacillus ultunensis DSM 16047] Length = 130 Score = 94.4 bits (234), Expect = 5e-18, Method: Composition-based stats. Identities = 26/138 (18%), Positives = 57/138 (41%), Gaps = 11/138 (7%) Query: 17 GIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGV 76 +R A+QA+Y + E E V ++ L + + +I GV Sbjct: 4 HESRKVAMQAVY---LANQEPDLNAEEVEAKV--------VATLNLKQLSAYSKKLIEGV 52 Query: 77 MDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHD 136 + ++ + +++ L + W R+ I+ +I+ + E+ E + + ++E + + + Sbjct: 53 LKNREDLQSELTNHLKKGWRLERVSQIVVAIMEVALFEIKESDEIDPKAAVNEALNLCDE 112 Query: 137 FFYGDEPKFINAVLDKVS 154 F E FIN +L Sbjct: 113 FAEPKEKPFINGMLANFV 130 >gi|254423258|ref|ZP_05036976.1| transcription antitermination factor NusB, putative [Synechococcus sp. PCC 7335] gi|196190747|gb|EDX85711.1| transcription antitermination factor NusB, putative [Synechococcus sp. PCC 7335] Length = 281 Score = 94.0 bits (233), Expect = 6e-18, Method: Composition-based stats. Identities = 32/143 (22%), Positives = 59/143 (41%), Gaps = 13/143 (9%) Query: 21 LAAVQALYQIDIIGCSTTEIISEYETYRFCA-----------DTELDVESVYLHVDLEWF 69 AA Q L + + S+ ++ A + E V + + Sbjct: 136 EAADQLLREHQQKVADIETVRSQIQSAIITAKLTITKIKTTLEPEQLVALLSRDDIRGYA 195 Query: 70 RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISE 129 ++ + ++ ID ++ + EKWS RL + ILR ++E++ VP +V I E Sbjct: 196 CELLGNWISYQKAIDAQLNEAM-EKWSIRRLARVDRDILRLAMIEIVYM-DVPKKVAIDE 253 Query: 130 YVCIAHDFFYGDEPKFINAVLDK 152 + +A + D +FIN VL + Sbjct: 254 AIEMAKRYSDEDGYRFINGVLRR 276 >gi|213858030|ref|ZP_03385001.1| transcription antitermination protein NusB [Salmonella enterica subsp. enterica serovar Typhi str. M223] Length = 59 Score = 94.0 bits (233), Expect = 6e-18, Method: Composition-based stats. Identities = 19/51 (37%), Positives = 29/51 (56%) Query: 104 LCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVS 154 ++LR + EL + VP +V I+E + +A F D KF+N VLDK + Sbjct: 1 EKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVLDKAA 51 >gi|58337606|ref|YP_194191.1| transcriptional termination factor [Lactobacillus acidophilus NCFM] gi|227904246|ref|ZP_04022051.1| transcriptional termination factor [Lactobacillus acidophilus ATCC 4796] gi|58254923|gb|AAV43160.1| transcriptional termination factor [Lactobacillus acidophilus NCFM] gi|227867894|gb|EEJ75315.1| transcriptional termination factor [Lactobacillus acidophilus ATCC 4796] Length = 130 Score = 94.0 bits (233), Expect = 6e-18, Method: Composition-based stats. Identities = 25/138 (18%), Positives = 57/138 (41%), Gaps = 11/138 (7%) Query: 17 GIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGV 76 +R A+QA+Y + E E V ++ L+ + + +I GV Sbjct: 4 HESRKVAMQAVY---LANQEPDLNAEEVEAKV--------VATLNLNQLSAYSKKLIEGV 52 Query: 77 MDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHD 136 ++ ++ + ++S L + W R+ + +I+ + E+ + + ++E + + + Sbjct: 53 LENREDLQSELTSHLKKGWRLERVSQTIVAIMEIALFEIKNSDEIEPKAAVNEALNLCDE 112 Query: 137 FFYGDEPKFINAVLDKVS 154 F E FIN +L Sbjct: 113 FAEPKEKPFINGMLANFV 130 >gi|332300781|ref|YP_004442702.1| NusB antitermination factor [Porphyromonas asaccharolytica DSM 20707] gi|332177844|gb|AEE13534.1| NusB antitermination factor [Porphyromonas asaccharolytica DSM 20707] Length = 347 Score = 94.0 bits (233), Expect = 7e-18, Method: Composition-based stats. Identities = 22/105 (20%), Positives = 49/105 (46%), Gaps = 3/105 (2%) Query: 61 YLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHS 120 + D + ++ + ++ D +++ L W R+ ++ ++ V E + C Sbjct: 244 HSDRDRLYAHQLLSETLLHREDYDAMLTPRLD-NWEQDRVALVDMILMEMAVAEALNCPD 302 Query: 121 VPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRSGCV 165 + + V I+EY+ +A + FINAVLD++ ++K G + Sbjct: 303 IALVVTINEYIELAKVYDNSKSASFINAVLDRLF--TDLKSEGKL 345 >gi|119485390|ref|ZP_01619718.1| transcription antitermination protein NusB [Lyngbya sp. PCC 8106] gi|119457146|gb|EAW38272.1| transcription antitermination protein NusB [Lyngbya sp. PCC 8106] Length = 210 Score = 94.0 bits (233), Expect = 7e-18, Method: Composition-based stats. Identities = 25/88 (28%), Positives = 42/88 (47%), Gaps = 2/88 (2%) Query: 66 LEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEV 125 + I+ + R+ ID +++ L W +RL I ILR V EL+ +V Sbjct: 113 AAYAIEILTEIHARRTEIDEILNQALV-DWQINRLPRIDRDILRIAVTELLY-LGTQEQV 170 Query: 126 IISEYVCIAHDFFYGDEPKFINAVLDKV 153 ++E + +A + D +FIN VL +V Sbjct: 171 ALNEAIELAKRYSDEDSYRFINGVLRRV 198 >gi|283455658|ref|YP_003360222.1| N utilization substance protein [Bifidobacterium dentium Bd1] gi|283102292|gb|ADB09398.1| nusB N utilization substance protein [Bifidobacterium dentium Bd1] Length = 86 Score = 93.6 bits (232), Expect = 7e-18, Method: Composition-based stats. Identities = 20/69 (28%), Positives = 33/69 (47%), Gaps = 1/69 (1%) Query: 86 LISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKF 145 ++ + W R+ ++ +ILR V E++ VP V I E + +A D P F Sbjct: 1 MLDEH-STGWKVKRMGVVDRNILRIAVWEIMFNDDVPNMVAIDEALGLAKTLCDDDSPAF 59 Query: 146 INAVLDKVS 154 I+ +L VS Sbjct: 60 IHGLLSAVS 68 >gi|228470129|ref|ZP_04055038.1| NusB family protein [Porphyromonas uenonis 60-3] gi|228308267|gb|EEK17122.1| NusB family protein [Porphyromonas uenonis 60-3] Length = 347 Score = 93.6 bits (232), Expect = 8e-18, Method: Composition-based stats. Identities = 20/93 (21%), Positives = 44/93 (47%), Gaps = 1/93 (1%) Query: 61 YLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHS 120 + D + ++ + ++ D +++ L W R+ ++ ++ V E + C Sbjct: 244 HSDRDRLYAHQLLSETLLHREEYDAMLTPRLD-NWEQDRVALVDMILMEMAVAEALSCPD 302 Query: 121 VPVEVIISEYVCIAHDFFYGDEPKFINAVLDKV 153 + + V I+EY+ +A + FINAVLD++ Sbjct: 303 IALVVTINEYIELAKVYDNAKSASFINAVLDRL 335 >gi|238854805|ref|ZP_04645135.1| transcription antitermination factor NusB [Lactobacillus jensenii 269-3] gi|260664036|ref|ZP_05864889.1| transcription antitermination factor NusB [Lactobacillus jensenii SJ-7A-US] gi|282933883|ref|ZP_06339231.1| transcription antitermination factor NusB [Lactobacillus jensenii 208-1] gi|313472312|ref|ZP_07812804.1| transcription antitermination factor NusB [Lactobacillus jensenii 1153] gi|238832595|gb|EEQ24902.1| transcription antitermination factor NusB [Lactobacillus jensenii 269-3] gi|239529835|gb|EEQ68836.1| transcription antitermination factor NusB [Lactobacillus jensenii 1153] gi|260561922|gb|EEX27891.1| transcription antitermination factor NusB [Lactobacillus jensenii SJ-7A-US] gi|281301972|gb|EFA94226.1| transcription antitermination factor NusB [Lactobacillus jensenii 208-1] Length = 133 Score = 93.6 bits (232), Expect = 8e-18, Method: Composition-based stats. Identities = 28/137 (20%), Positives = 57/137 (41%), Gaps = 11/137 (8%) Query: 17 GIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGV 76 +R A+QA++ + I + ET +S+ L + II GV Sbjct: 4 HDSRRIAMQAIF---LANGEPDLTIEQVETKV--------AKSLDLKEIPAYAHEIIAGV 52 Query: 77 MDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHD 136 + ++ I+ IS L + W R++ I +I+ + E+ + ++ ++E + + + Sbjct: 53 LAKRPEIEADISKYLKKGWRLERVNRISVAIMEVAIFEISQSDAISAPAAVNEALILCEE 112 Query: 137 FFYGDEPKFINAVLDKV 153 F FIN +L Sbjct: 113 FDDPKSKSFINGILANF 129 >gi|145219990|ref|YP_001130699.1| sun protein [Prosthecochloris vibrioformis DSM 265] gi|145206154|gb|ABP37197.1| sun protein [Chlorobium phaeovibrioides DSM 265] Length = 445 Score = 93.6 bits (232), Expect = 9e-18, Method: Composition-based stats. Identities = 32/157 (20%), Positives = 61/157 (38%), Gaps = 17/157 (10%) Query: 17 GIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGV 76 AR A + + + + ++ ES D + +++GV Sbjct: 2 TSARELAF-----------TLLQALETGNRHSDSLLHDMLQESSLSRTDRAFATSLVNGV 50 Query: 77 MDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHD 136 + + +D +I + + + +ILR G +L+ VP +++E V +A Sbjct: 51 LRYRLQLDFVIGHFYSHN--LQKASPAIRNILRLGAWQLLFLDRVPAWAVVNESVRLARR 108 Query: 137 FFYGDEPKFINAVLDKVSRK----EEIKRSGCVSAIT 169 F K +NAVL K+S + EE R+ +A Sbjct: 109 FKGERMAKLVNAVLRKISPETIHLEEWTRAMEPAARL 145 >gi|260101433|ref|ZP_05751670.1| transcriptional termination factor [Lactobacillus helveticus DSM 20075] gi|260084773|gb|EEW68893.1| transcriptional termination factor [Lactobacillus helveticus DSM 20075] Length = 135 Score = 93.6 bits (232), Expect = 9e-18, Method: Composition-based stats. Identities = 25/138 (18%), Positives = 58/138 (42%), Gaps = 11/138 (7%) Query: 17 GIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGV 76 +R A+QA+Y + + ET V ++ L + + +I GV Sbjct: 9 HESRKVAMQAVY---LANQEPDLSAEDVETKV--------VATLNLKQLSAYSKKLIEGV 57 Query: 77 MDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHD 136 ++ ++ + +++ L + W R+ I+ +I+ + E+ + + ++E + + + Sbjct: 58 LENREDLQSELTNHLKKSWRLERVSQIVVAIMEVALFEIKNSDEIDPKAAVNEALNLCDE 117 Query: 137 FFYGDEPKFINAVLDKVS 154 F E FIN +L Sbjct: 118 FAEPKEKPFINGMLANFV 135 >gi|284044527|ref|YP_003394867.1| NusB antitermination factor [Conexibacter woesei DSM 14684] gi|283948748|gb|ADB51492.1| NusB antitermination factor [Conexibacter woesei DSM 14684] Length = 133 Score = 93.2 bits (231), Expect = 9e-18, Method: Composition-based stats. Identities = 36/139 (25%), Positives = 53/139 (38%), Gaps = 27/139 (19%) Query: 26 ALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDL 85 ALYQ D+ G + + + A+ + L E+ D Sbjct: 3 ALYQHDLTGRPLEQTLP-----KDAANFTRALAQAALARQAEF---------------DA 42 Query: 86 LISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEV------IISEYVCIAHDFFY 139 LIS E W+ R+ + SILR +LE++ VP E I E + A + Sbjct: 43 LISRH-AEGWTLQRIAPLERSILRVSLLEMLHPGDVPAERPIPPEGAIDEAIETAKAYCG 101 Query: 140 GDEPKFINAVLDKVSRKEE 158 D P F+N VL + R E Sbjct: 102 ADAPGFVNGVLAAILRAER 120 >gi|269120364|ref|YP_003308541.1| NusB antitermination factor [Sebaldella termitidis ATCC 33386] gi|268614242|gb|ACZ08610.1| NusB antitermination factor [Sebaldella termitidis ATCC 33386] Length = 130 Score = 93.2 bits (231), Expect = 1e-17, Method: Composition-based stats. Identities = 33/139 (23%), Positives = 58/139 (41%), Gaps = 12/139 (8%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 R R + L++ ++I ++E + E D+E+ R I Sbjct: 3 RRKLREEIFKLLFERELIDNDMDVRLAEVLSENNITKEE----------DIEFMREYIKN 52 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135 V + K+ I+ I S L WSF L + ++L+ E+ E E++I+E V +A Sbjct: 53 VTEHKESIEDKIKSKLV-GWSFDILGTVEKTLLKMSFYEITEAG-TGHEIVINETVELAK 110 Query: 136 DFFYGDEPKFINAVLDKVS 154 + P FIN +L + Sbjct: 111 KYGEDKTPDFINGILADLV 129 >gi|325680270|ref|ZP_08159830.1| ribosomal RNA small subunit methyltransferase B [Ruminococcus albus 8] gi|324107979|gb|EGC02235.1| ribosomal RNA small subunit methyltransferase B [Ruminococcus albus 8] Length = 429 Score = 93.2 bits (231), Expect = 1e-17, Method: Composition-based stats. Identities = 28/119 (23%), Positives = 58/119 (48%), Gaps = 2/119 (1%) Query: 41 ISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRL 100 + E +Y E S + D ++ + +GV++R+ +D +I+ L++ ++L Sbjct: 15 LDENSSYSNILLDEALARSDFDKRDKKFISALFYGVLERRLTLDAMIAE-LSKN-PKNKL 72 Query: 101 DMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEI 159 + L +ILR+G+ +L SVP + E V +A F+N +L + R+++ Sbjct: 73 NNTLRNILRSGLYQLKYMDSVPDNAAVDESVEMAKKLRNPASAGFVNGLLREFIRRDKA 131 >gi|225010642|ref|ZP_03701112.1| NusB antitermination factor [Flavobacteria bacterium MS024-3C] gi|225005195|gb|EEG43147.1| NusB antitermination factor [Flavobacteria bacterium MS024-3C] Length = 315 Score = 93.2 bits (231), Expect = 1e-17, Method: Composition-based stats. Identities = 31/107 (28%), Positives = 53/107 (49%), Gaps = 3/107 (2%) Query: 62 LHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSV 121 L D E+ + ++ K+ I ++ T KW R+ I +L+ + EL+ S+ Sbjct: 207 LEDDAEFAQNLLVKTAL-KESILAKETADKTPKWDKDRIADIDGILLKMSICELLFFPSI 265 Query: 122 PVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRSGCVSAI 168 PV V I+EY+ IA ++ FIN +LD +S+ E K G + + Sbjct: 266 PVRVTINEYLEIAKEYSTPKSSIFINGILDSLSK--EYKDQGRLEKV 310 >gi|158320464|ref|YP_001512971.1| sun protein [Alkaliphilus oremlandii OhILAs] gi|158140663|gb|ABW18975.1| sun protein [Alkaliphilus oremlandii OhILAs] Length = 445 Score = 93.2 bits (231), Expect = 1e-17, Method: Composition-based stats. Identities = 29/139 (20%), Positives = 60/139 (43%), Gaps = 14/139 (10%) Query: 20 RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79 R A++ LY+I++ E + A + Y +D +++GV++ Sbjct: 4 REGALKVLYEINVN-----------EAFSNIALNKELNNESYNLLDRNLLTELVYGVLEN 52 Query: 80 KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139 + +ID ++S + +++ ++LR G+ +L+ VP ++E V ++ + Sbjct: 53 QIYIDHVLSQF--SNFQLDKMNPYTLNLLRLGIYQLLFLDRVPSFAAVNETVNLSKKYC- 109 Query: 140 GDEPKFINAVLDKVSRKEE 158 FIN VL V R Sbjct: 110 KKTTGFINGVLRNVQRNRN 128 >gi|315023990|gb|EFT36992.1| Transcription termination protein NusB [Riemerella anatipestifer RA-YM] Length = 301 Score = 93.2 bits (231), Expect = 1e-17, Method: Composition-based stats. Identities = 26/114 (22%), Positives = 52/114 (45%), Gaps = 3/114 (2%) Query: 48 RFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSI 107 R + ++ + D + + ++ ++ + ++ + L + W R+ ++ I Sbjct: 190 REGEPSHTLIKIIKDEEDRSFAQKLLQYSLNHWEDTEVKLKERL-KNWELDRISLMDRVI 248 Query: 108 LRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKR 161 L A + EL P +VII+EY+ I+ F FIN +L K + E+I R Sbjct: 249 LIAAITELDHFPLTPSKVIINEYIEISKAFSTDKSQVFINGLLGKYA--EDINR 300 >gi|78189086|ref|YP_379424.1| Fmu, rRNA SAM-dependent methyltransferase [Chlorobium chlorochromatii CaD3] gi|78171285|gb|ABB28381.1| Fmu, rRNA SAM-dependent methyltransferase [Chlorobium chlorochromatii CaD3] Length = 429 Score = 93.2 bits (231), Expect = 1e-17, Method: Composition-based stats. Identities = 27/137 (19%), Positives = 53/137 (38%), Gaps = 13/137 (9%) Query: 17 GIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGV 76 AR A+Q L ++ + ++ ++ S V+ +++GV Sbjct: 2 STAREVALQVLQALEKSSERSDALLHKHLE-----------ASGLERVERALATELVNGV 50 Query: 77 MDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHD 136 + + +D IS L +L +ILR G +L+ +P ++E V +A Sbjct: 51 LRWQLQLDSRIS--LAYHHKLEAAAPVLRNILRLGAYQLLFLTKIPRWAAVNECVKLARK 108 Query: 137 FFYGDEPKFINAVLDKV 153 + K +N VL + Sbjct: 109 YKGERMAKLVNGVLRHL 125 >gi|39938929|ref|NP_950695.1| transcription termination factor [Onion yellows phytoplasma OY-M] gi|39722038|dbj|BAD04528.1| transcription termination factor [Onion yellows phytoplasma OY-M] Length = 149 Score = 93.2 bits (231), Expect = 1e-17, Method: Composition-based stats. Identities = 31/159 (19%), Positives = 66/159 (41%), Gaps = 30/159 (18%) Query: 10 LKLSHRRGIARLA---AVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDL 66 +K + + +RL ++ LYQ D + T + + Sbjct: 1 MKHTQNKKESRLLRIEVMKLLYQYDFYQNNLT------------------LSQTNPNPIF 42 Query: 67 EWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVI 126 +F+ II + ID +I+ L + +RL+ + +I+R EL+E ++ +I Sbjct: 43 TFFQKIIT----NLKFIDEIITKSLY-DYKINRLNKVDRAIIRLATYELLET-NISHAII 96 Query: 127 ISEYVCIAHDFF---YGDEPKFINAVLDKVSRKEEIKRS 162 I E + + F + KF N +LD++ ++ ++ + Sbjct: 97 IDEAIELTKQFCNLNDEKQHKFNNKLLDQIYQQLQMYKK 135 >gi|256851330|ref|ZP_05556719.1| transcription antitermination factor NusB [Lactobacillus jensenii 27-2-CHN] gi|260660754|ref|ZP_05861669.1| transcription antitermination factor NusB [Lactobacillus jensenii 115-3-CHN] gi|282933225|ref|ZP_06338612.1| transcription antitermination factor NusB [Lactobacillus jensenii 208-1] gi|297206200|ref|ZP_06923595.1| transcription antitermination factor NusB [Lactobacillus jensenii JV-V16] gi|256616392|gb|EEU21580.1| transcription antitermination factor NusB [Lactobacillus jensenii 27-2-CHN] gi|260548476|gb|EEX24451.1| transcription antitermination factor NusB [Lactobacillus jensenii 115-3-CHN] gi|281302729|gb|EFA94944.1| transcription antitermination factor NusB [Lactobacillus jensenii 208-1] gi|297149326|gb|EFH29624.1| transcription antitermination factor NusB [Lactobacillus jensenii JV-V16] Length = 133 Score = 93.2 bits (231), Expect = 1e-17, Method: Composition-based stats. Identities = 30/137 (21%), Positives = 58/137 (42%), Gaps = 11/137 (8%) Query: 17 GIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGV 76 +R A+QA++ + I + ET +S+ L V + II GV Sbjct: 4 HDSRRIAMQAIF---LANGEPDLTIEQVETKV--------AKSLDLKVIPAYAHEIIAGV 52 Query: 77 MDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHD 136 + +K I+ IS L + W R++ I +I+ + E+ + ++ ++E + + + Sbjct: 53 LAKKSEIEADISKYLRKGWRLERVNRISVAIIEVAIFEISQSDAISAPAAVNEALILCEE 112 Query: 137 FFYGDEPKFINAVLDKV 153 F FIN +L Sbjct: 113 FDDPKSKSFINGILANF 129 >gi|89890544|ref|ZP_01202054.1| putative antitermination protein NusB [Flavobacteria bacterium BBFL7] gi|89517459|gb|EAS20116.1| putative antitermination protein NusB [Flavobacteria bacterium BBFL7] Length = 312 Score = 92.9 bits (230), Expect = 1e-17, Method: Composition-based stats. Identities = 23/104 (22%), Positives = 49/104 (47%), Gaps = 1/104 (0%) Query: 57 VESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELI 116 E + D+++ + + ++ I T W R+ I ++ E + Sbjct: 199 PELIKDEDDVKFTMDLFRKTLFNREEFLERIEGK-TPNWEQDRIAQIDLVLIMMAQCEFL 257 Query: 117 ECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIK 160 + +S+PV+V ++EY+ I+ D+ FIN +LD +S++ E + Sbjct: 258 KFNSIPVKVSLNEYLEISKDYSTPKSSFFINGILDNLSKEYEKE 301 >gi|313897409|ref|ZP_07830952.1| transcription antitermination factor NusB [Clostridium sp. HGF2] gi|312957779|gb|EFR39404.1| transcription antitermination factor NusB [Clostridium sp. HGF2] Length = 125 Score = 92.9 bits (230), Expect = 1e-17, Method: Composition-based stats. Identities = 33/140 (23%), Positives = 62/140 (44%), Gaps = 16/140 (11%) Query: 14 HRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVII 73 + R R A+ +LYQ ++ E Y E+D + +D ++ + Sbjct: 2 NSRHKLRELAMTSLYQHFLLQKDIKE-----CVYDNSETNEIDPFLYTVTIDAIRYQDV- 55 Query: 74 HGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCI 133 +ID I++ L + W+F+RL + +IL EL + + P ++I E V + Sbjct: 56 --------YIDK-INAALRQDWTFARLGFVEQAILMMAACEL-DLETAPKAIVIDEAVTL 105 Query: 134 AHDFFYGDEPKFINAVLDKV 153 A + + + IN VLD++ Sbjct: 106 AKKYCDDETYRLINGVLDRL 125 >gi|300775935|ref|ZP_07085795.1| conserved hypothetical protein [Chryseobacterium gleum ATCC 35910] gi|300505485|gb|EFK36623.1| conserved hypothetical protein [Chryseobacterium gleum ATCC 35910] Length = 301 Score = 92.9 bits (230), Expect = 1e-17, Method: Composition-based stats. Identities = 25/111 (22%), Positives = 48/111 (43%), Gaps = 1/111 (0%) Query: 48 RFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSI 107 R ++ ++ + D + ++ ++ ++ + + L E W R+ ++ I Sbjct: 190 REDEESRTLIKMIKDEDDKTFAAKLLKDTLNNWENNEKKLEERL-ENWDLERVSLMDKVI 248 Query: 108 LRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEE 158 L + EL P VII+EY+ IA F FIN +LDK + + Sbjct: 249 LSTAIAELDNFAFTPSRVIINEYIEIAKVFATDRSNIFINGILDKYCKDQN 299 >gi|161507739|ref|YP_001577700.1| transcription termination [Lactobacillus helveticus DPC 4571] gi|160348728|gb|ABX27402.1| transcription termination [Lactobacillus helveticus DPC 4571] Length = 130 Score = 92.9 bits (230), Expect = 1e-17, Method: Composition-based stats. Identities = 26/139 (18%), Positives = 58/139 (41%), Gaps = 13/139 (9%) Query: 17 GIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVY-LHVDLEWFRVIIHG 75 +R A+QA+Y ++ E D E V + L + + +I G Sbjct: 4 HESRKVAMQAVY------------LANQEPDLSAEDVEAKVVATLNLKQLSAYSKKLIEG 51 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135 V++ ++ + +++ L + W R+ I+ +I+ + E+ + + ++E + + Sbjct: 52 VLENREDLQSELTNHLKKSWRLERVSQIVVAIMEVALFEIKNSDKIDPKAAVNEALNLCD 111 Query: 136 DFFYGDEPKFINAVLDKVS 154 +F E FIN +L Sbjct: 112 EFAEPKEKPFINGMLANFV 130 >gi|147678123|ref|YP_001212338.1| tRNA and rRNA cytosine-C5-methylases [Pelotomaculum thermopropionicum SI] gi|146274220|dbj|BAF59969.1| tRNA and rRNA cytosine-C5-methylases [Pelotomaculum thermopropionicum SI] Length = 456 Score = 92.9 bits (230), Expect = 1e-17, Method: Composition-based stats. Identities = 27/140 (19%), Positives = 55/140 (39%), Gaps = 13/140 (9%) Query: 19 ARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMD 78 AR A++ + E Y A ++ + +D + + +G + Sbjct: 9 ARELALK-----------VVNAVEEEGAYANLALNQVLEKHRPGKLDRAFATELAYGTLR 57 Query: 79 RKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFF 138 +D ++ + + S + +ILR GV +L+ VP + +E +A + Sbjct: 58 SLNTLDWVLEQFIKQ--PLSSQSRTVLNILRLGVYQLMFMDRVPPSAVCNEGAELARKYG 115 Query: 139 YGDEPKFINAVLDKVSRKEE 158 + KF+N VL +SR+ Sbjct: 116 HAGTVKFVNGVLRNISRRLN 135 >gi|188994695|ref|YP_001928947.1| probable nitrogen utilization substance protein [Porphyromonas gingivalis ATCC 33277] gi|188594375|dbj|BAG33350.1| probable nitrogen utilization substance protein [Porphyromonas gingivalis ATCC 33277] Length = 348 Score = 92.5 bits (229), Expect = 2e-17, Method: Composition-based stats. Identities = 30/139 (21%), Positives = 55/139 (39%), Gaps = 7/139 (5%) Query: 28 YQIDIIGCSTTEIISEYE---TYRFCADTELDV---ESVYLHVDLEWFRVIIHGVMDRKQ 81 YQ + EI+ E+ R DT+ + D + ++ + Q Sbjct: 206 YQTIRQENAPIEIVKEFVLKTIRRIEQDTDPSAILLPAYKEKDDAVFGTTLLRNAIINGQ 265 Query: 82 HIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGD 141 +I L W R+ + I++ + EL+ ++PV V I+EY+ ++ F Sbjct: 266 EYRHIIRENLI-NWEVDRIADMDMLIMQLAITELLHFPNIPVLVTINEYIDLSKLFSTPK 324 Query: 142 EPKFINAVLDKVSRKEEIK 160 F+N +LD V + K Sbjct: 325 SGTFVNGLLDAVVKSLREK 343 >gi|197294848|ref|YP_001799389.1| Transcription termination factor [Candidatus Phytoplasma australiense] gi|171854175|emb|CAM12169.1| Transcription termination factor [Candidatus Phytoplasma australiense] Length = 138 Score = 92.5 bits (229), Expect = 2e-17, Method: Composition-based stats. Identities = 38/161 (23%), Positives = 65/161 (40%), Gaps = 32/161 (19%) Query: 5 DNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHV 64 +N K K S + R+ ++ LYQ D + +I E F Sbjct: 2 NNHKRFKKS---RLLRIKMMKLLYQYDFYSNNLKKISQEKLQSDFEK------------- 45 Query: 65 DLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVE 124 ++ + ID +I + L + +RL+ + +I+R EL+E P Sbjct: 46 -----------IIMKLPFIDEIIINNLY-NYKLNRLNKVDKAIIRLATFELLENK-TPYA 92 Query: 125 VIISEYVCIAHDFF---YGDEPKFINAVLDKVSRKEEIKRS 162 +II E V + F + KF N +LDK+ ++ EIK + Sbjct: 93 LIIDEAVELTKQFCNLHNEKQHKFNNKLLDKIHKQLEIKET 133 >gi|327405408|ref|YP_004346246.1| NusB antitermination factor [Fluviicola taffensis DSM 16823] gi|327320916|gb|AEA45408.1| NusB antitermination factor [Fluviicola taffensis DSM 16823] Length = 315 Score = 92.5 bits (229), Expect = 2e-17, Method: Composition-based stats. Identities = 29/143 (20%), Positives = 58/143 (40%), Gaps = 20/143 (13%) Query: 29 QIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVM----DRKQHID 84 Q+ I E ++ D E + E + R ++ + + ID Sbjct: 182 QMTIKSIKAMEEGQKFVVMPLYKDKEDEQE---------FLRGLLRKTISMDSENLLLID 232 Query: 85 LLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPK 144 LT+ W R+ + +L+ + EL +++P +V ++EY+ I+ + Sbjct: 233 E-----LTDNWELERIAKMDILLLKMAITELQVFNNIPKKVTLNEYIEISKFYSTPKSHG 287 Query: 145 FINAVLDKVSRKEEIKRSGCVSA 167 FIN +LDK + + + G +S Sbjct: 288 FINGILDKAV--DRLVKDGKISK 308 >gi|333031441|ref|ZP_08459502.1| NusB antitermination factor [Bacteroides coprosuis DSM 18011] gi|332742038|gb|EGJ72520.1| NusB antitermination factor [Bacteroides coprosuis DSM 18011] Length = 308 Score = 92.1 bits (228), Expect = 2e-17, Method: Composition-based stats. Identities = 25/135 (18%), Positives = 64/135 (47%), Gaps = 5/135 (3%) Query: 31 DIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSC 90 +I+ + I +++ + +D L E D E+ ++ ++ +++ LI + Sbjct: 176 EIVDTFIIKTIKKFKAEK-GSDQPLLPE-YKDDEDQEFAVRLLRQAIENEEYYRSLIGTH 233 Query: 91 LTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVL 150 T+ W R+ ++ +++ + E++ ++P+ V +EY+ +A + FIN L Sbjct: 234 -TKNWELDRIALMDVVLMQCALAEVLSFPNIPLSVTFNEYLDLAKLYSTHKSGGFINGTL 292 Query: 151 DKVSRKEEIKRSGCV 165 D + ++K+ G + Sbjct: 293 DSII--NQLKKEGKL 305 >gi|189347315|ref|YP_001943844.1| sun protein [Chlorobium limicola DSM 245] gi|189341462|gb|ACD90865.1| sun protein [Chlorobium limicola DSM 245] Length = 451 Score = 92.1 bits (228), Expect = 2e-17, Method: Composition-based stats. Identities = 30/154 (19%), Positives = 62/154 (40%), Gaps = 16/154 (10%) Query: 18 IARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVM 77 +R A++ L I+ + + E ++ + D +++GV+ Sbjct: 8 TSRELALKVLQNIESGEKKSGTALHEQLSH-----------TSLNQNDRALATELVNGVL 56 Query: 78 DRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDF 137 R+ +D I + + +L +ILR G +LI +P ++E V +A + Sbjct: 57 RRRLTLDTFIGRYYHH--RYEKAAPVLKNILRIGAYQLIYLDRIPHWAAVNESVSLARRY 114 Query: 138 FYGDEPKFINAVLDKVSRK---EEIKRSGCVSAI 168 K +NAVL ++ + ++ SG + I Sbjct: 115 KGEHMAKLVNAVLRNITPETISADLDPSGKMKEI 148 >gi|332884936|gb|EGK05191.1| hypothetical protein HMPREF9456_03104 [Dysgonomonas mossii DSM 22836] Length = 308 Score = 92.1 bits (228), Expect = 2e-17, Method: Composition-based stats. Identities = 25/114 (21%), Positives = 53/114 (46%), Gaps = 2/114 (1%) Query: 40 IISEYETYRFCADTELDVESVY-LHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFS 98 ++ + + TE ++ ++ D E+ ++ + + LI T+ W Sbjct: 182 VLKTIKRFDENKGTEQELLPMFKDETDKEFAVKLLRESLFNGKEYRELIDKY-TKNWESE 240 Query: 99 RLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDK 152 R+ ++ I++ + E+IE S+P+ V ++EY+ IA + FIN +LD Sbjct: 241 RIALMDMVIMQIAIAEIIEFPSIPISVSLNEYIDIAKSYSTIKSASFINGILDA 294 >gi|291518519|emb|CBK73740.1| ribosomal RNA small subunit methyltransferase RsmB [Butyrivibrio fibrisolvens 16/4] Length = 423 Score = 92.1 bits (228), Expect = 3e-17, Method: Composition-based stats. Identities = 28/127 (22%), Positives = 57/127 (44%), Gaps = 2/127 (1%) Query: 31 DIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSC 90 +I + EI+ + LD + + +++G ++RK +D +I S Sbjct: 8 EIAMETVIEILENGQFSHIYLKAVLDKYGYLEKNERAFLNRLVNGTVERKLQLDYIIDSF 67 Query: 91 LTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVL 150 K ++ ++ +++R GV E+ +VP +EYV +A + F+N VL Sbjct: 68 SKTK--VKKMKPLIRTVMRLGVYEIYYMDAVPDSATCNEYVKLAKKRGFAGLSGFVNGVL 125 Query: 151 DKVSRKE 157 +SR++ Sbjct: 126 RNISREK 132 >gi|313206914|ref|YP_004046091.1| nusb antitermination factor [Riemerella anatipestifer DSM 15868] gi|312446230|gb|ADQ82585.1| NusB antitermination factor [Riemerella anatipestifer DSM 15868] gi|325335649|gb|ADZ11923.1| NusB [Riemerella anatipestifer RA-GD] Length = 301 Score = 91.7 bits (227), Expect = 3e-17, Method: Composition-based stats. Identities = 26/114 (22%), Positives = 52/114 (45%), Gaps = 3/114 (2%) Query: 48 RFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSI 107 R + ++ + D + + ++ ++ + ++ + L + W R+ ++ I Sbjct: 190 REGEPSHTLIKIIKDEEDRSFAQKLLQYSLNHWEDTEVKLKERL-KNWELDRVSLMDRVI 248 Query: 108 LRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKR 161 L A + EL P +VII+EY+ I+ F FIN +L K + E+I R Sbjct: 249 LIAAITELDHFPLTPSKVIINEYIEISKAFSTDKSQVFINGLLGKYA--EDINR 300 >gi|313905220|ref|ZP_07838588.1| sun protein [Eubacterium cellulosolvens 6] gi|313469973|gb|EFR65307.1| sun protein [Eubacterium cellulosolvens 6] Length = 437 Score = 91.7 bits (227), Expect = 3e-17, Method: Composition-based stats. Identities = 34/145 (23%), Positives = 57/145 (39%), Gaps = 16/145 (11%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 R R AV+ L I E LD + D ++ + G Sbjct: 4 RVNVRELAVETL----------LAIQKENRQSHLLIRDVLDQYAWLPDRDRAFYVRLTEG 53 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA- 134 ++ + +D +I+S K +R+ ++ ILR V +L SVP ++E V +A Sbjct: 54 TLEYRLQLDYIINSY--SKTRTTRMKPMIREILRVAVYQLRYMDSVPDSAAVNEAVRLAV 111 Query: 135 -HDFFYGDEPKFINAVLDKVSRKEE 158 F F+N VL ++R+ E Sbjct: 112 RRGFSGLK--GFVNGVLRSIAREPE 134 >gi|325279484|ref|YP_004252026.1| NusB antitermination factor [Odoribacter splanchnicus DSM 20712] gi|324311293|gb|ADY31846.1| NusB antitermination factor [Odoribacter splanchnicus DSM 20712] Length = 320 Score = 91.7 bits (227), Expect = 3e-17, Method: Composition-based stats. Identities = 24/110 (21%), Positives = 43/110 (39%), Gaps = 1/110 (0%) Query: 43 EYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDM 102 + + + ++ D E+ R ++ +I T W R+ Sbjct: 187 WHLQEKMREEDDILYPIYKKDEDFEYARTLMRKAFYEYNANMEIIDKF-TYNWELDRISE 245 Query: 103 ILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDK 152 + I+ + EL S+PV+V + EY+ I+ + FIN VLDK Sbjct: 246 MDKLIMSCAISELKHFPSIPVKVTLDEYIEISKTYSSPKSGAFINGVLDK 295 >gi|320530184|ref|ZP_08031254.1| ribosomal RNA small subunit methyltransferase B [Selenomonas artemidis F0399] gi|320137617|gb|EFW29529.1| ribosomal RNA small subunit methyltransferase B [Selenomonas artemidis F0399] Length = 451 Score = 91.7 bits (227), Expect = 3e-17, Method: Composition-based stats. Identities = 28/153 (18%), Positives = 56/153 (36%), Gaps = 19/153 (12%) Query: 12 LSHRRGIA------RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVD 65 ++ R A R A+Q L +++ ++ R + D Sbjct: 1 MTENRYAADKIDPVRELAMQVL--MEVHRDGAYANVALVRAMR---------AAQLTDRD 49 Query: 66 LEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEV 125 + +++G + +D +I+ L + +R+ + ILR G+ ++ VP Sbjct: 50 RRFLTELVYGTVKAGDTLDDMIAKYLRDGK--ARIKPQIREILRLGIYQIFFMDKVPASA 107 Query: 126 IISEYVCIAHDFFYGDEPKFINAVLDKVSRKEE 158 + V +A F+NAVL R+ E Sbjct: 108 ACNTAVELAKKHGKRGADSFVNAVLRAAVREPE 140 >gi|295091953|emb|CBK78060.1| ribosomal RNA small subunit methyltransferase RsmB [Clostridium cf. saccharolyticum K10] Length = 472 Score = 91.3 bits (226), Expect = 4e-17, Method: Composition-based stats. Identities = 34/170 (20%), Positives = 61/170 (35%), Gaps = 26/170 (15%) Query: 1 MTIQDNKKDLKLSHRRGI----------ARLAAVQALYQIDIIGCSTTEIISEYETYRFC 50 MT ++K R G AR A L E++ + + Sbjct: 1 MTRPGSRKPENGKQREGKKAGSLQRMPDAREIAADIL----------MEVLEKKQYSHVV 50 Query: 51 ADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRA 110 L + + + ++ G ++R ID +I S + ++ + +ILR Sbjct: 51 LLNALKKYQYLEKQERSFIKRVVDGTLERLMQIDFIIESFSST--PLRKMKPTVRTILRM 108 Query: 111 GVLELIECHSVPVEVIISEYVCIA--HDFFYGDEPKFINAVLDKVSRKEE 158 GV ++ VP +E V + F F+N VL ++RK+E Sbjct: 109 GVYQICYMDRVPDSAACNEAVKLTVKRGFSGLK--GFVNGVLRNIARKKE 156 >gi|313888508|ref|ZP_07822175.1| ribosomal RNA small subunit methyltransferase B [Peptoniphilus harei ACS-146-V-Sch2b] gi|312845537|gb|EFR32931.1| ribosomal RNA small subunit methyltransferase B [Peptoniphilus harei ACS-146-V-Sch2b] Length = 430 Score = 91.3 bits (226), Expect = 4e-17, Method: Composition-based stats. Identities = 30/141 (21%), Positives = 59/141 (41%), Gaps = 14/141 (9%) Query: 20 RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79 R A+Q + +++ Y+ E+ S D + + I GV+ Sbjct: 5 REKALQII----------NDVL--YKGTFLEESLEILKASNIDERDFAFIKEITTGVVRN 52 Query: 80 KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139 K ++D +I K F+R+ I+ SIL + ++ VP I+ E V +A + Sbjct: 53 KTYLDYVIREN--SKVRFNRIHKIILSILEMAIYQMYFLDKVPDYSIVDESVNLAKIYGN 110 Query: 140 GDEPKFINAVLDKVSRKEEIK 160 F N +L +S+++ ++ Sbjct: 111 KGSISFTNGILRSISKEKHLQ 131 >gi|282879285|ref|ZP_06288030.1| transcription antitermination factor NusB [Prevotella buccalis ATCC 35310] gi|281298567|gb|EFA90991.1| transcription antitermination factor NusB [Prevotella buccalis ATCC 35310] Length = 333 Score = 91.3 bits (226), Expect = 4e-17, Method: Composition-based stats. Identities = 28/125 (22%), Positives = 54/125 (43%), Gaps = 3/125 (2%) Query: 31 DIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSC 90 +++ + I ++ AD E+ E D ++ + + L +S Sbjct: 175 EVVDTFVLKTIRRFDQANK-ADQEILPE-YKDEEDRDFATKLFRATILNADTYQLYMSET 232 Query: 91 LTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVL 150 + W FSRL + I++ + E++ ++PV V I EYV A + +IN +L Sbjct: 233 -SRNWDFSRLAYMDVVIMQIAIAEMLTFPNIPVSVTIYEYVNQAKRYSTTKSGGYINGML 291 Query: 151 DKVSR 155 D ++R Sbjct: 292 DSIAR 296 >gi|283797834|ref|ZP_06346987.1| ribosomal RNA small subunit methyltransferase B [Clostridium sp. M62/1] gi|291074522|gb|EFE11886.1| ribosomal RNA small subunit methyltransferase B [Clostridium sp. M62/1] Length = 472 Score = 90.9 bits (225), Expect = 5e-17, Method: Composition-based stats. Identities = 34/170 (20%), Positives = 61/170 (35%), Gaps = 26/170 (15%) Query: 1 MTIQDNKKDLKLSHRRGI----------ARLAAVQALYQIDIIGCSTTEIISEYETYRFC 50 MT ++K R G AR A L E++ + + Sbjct: 1 MTRPGSRKPENGKQREGKKAGSPQRMPDAREIAADIL----------MEVLEKKQYSHVV 50 Query: 51 ADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRA 110 L + + + ++ G ++R ID +I S + ++ + +ILR Sbjct: 51 LLNALKKYQYLEKQERSFIKRVVDGTLERLMQIDFIIESFSST--PLRKMKPTVRTILRM 108 Query: 111 GVLELIECHSVPVEVIISEYVCIA--HDFFYGDEPKFINAVLDKVSRKEE 158 GV ++ VP +E V + F F+N VL ++RK+E Sbjct: 109 GVYQICYMDRVPDSAACNEAVKLTVKRGFSGLK--GFVNGVLRNIARKKE 156 >gi|160933495|ref|ZP_02080883.1| hypothetical protein CLOLEP_02341 [Clostridium leptum DSM 753] gi|156867372|gb|EDO60744.1| hypothetical protein CLOLEP_02341 [Clostridium leptum DSM 753] Length = 446 Score = 90.9 bits (225), Expect = 5e-17, Method: Composition-based stats. Identities = 31/140 (22%), Positives = 53/140 (37%), Gaps = 13/140 (9%) Query: 17 GIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGV 76 ARL A++AL + + E + Y S D + + +GV Sbjct: 5 KNARLTALKAL----LR-------VEEGKGYSNLVLDHGLAASGLDGRDAAFASALFYGV 53 Query: 77 MDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHD 136 ++R+ +D IS K S++ + ILR G +L+ VP ++E V + Sbjct: 54 LERRITLDYQISRY--SKMPLSQMAAPVREILRLGFYQLLYMDKVPQSAAVNESVKLTRA 111 Query: 137 FFYGDEPKFINAVLDKVSRK 156 F+N +L R Sbjct: 112 VKKDKASGFVNGILRSFIRD 131 >gi|317056478|ref|YP_004104945.1| sun protein [Ruminococcus albus 7] gi|315448747|gb|ADU22311.1| sun protein [Ruminococcus albus 7] Length = 431 Score = 90.9 bits (225), Expect = 5e-17, Method: Composition-based stats. Identities = 31/125 (24%), Positives = 59/125 (47%), Gaps = 3/125 (2%) Query: 41 ISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRL 100 + E +Y E S + D ++ + +GV++R+ +D +I L++ S+L Sbjct: 15 LDENNSYSNILLDESLSRSDFDKRDKKFIAALFYGVIERRLTLDAIIVD-LSKN-PKSKL 72 Query: 101 DMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDK-VSRKEEI 159 + L +ILR G+ +L SVP + E V +A P F N +L + + R +E+ Sbjct: 73 NYTLRNILRCGLYQLKYMDSVPDNAAVDESVELAKKCRNPAAPGFTNGLLREFIRRSKEL 132 Query: 160 KRSGC 164 ++ Sbjct: 133 PKTNS 137 >gi|152976231|ref|YP_001375748.1| sun protein [Bacillus cereus subsp. cytotoxis NVH 391-98] gi|152024983|gb|ABS22753.1| sun protein [Bacillus cytotoxicus NVH 391-98] Length = 444 Score = 90.9 bits (225), Expect = 5e-17, Method: Composition-based stats. Identities = 29/141 (20%), Positives = 55/141 (39%), Gaps = 16/141 (11%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 R R A+ L Q++ G + ++ L +S D+ I++G Sbjct: 2 RQNVRELALDGLMQVEKSGAYSNLLL-----------NHLIEKSTIHKKDIGLLTEIVYG 50 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135 + R+ +D + L +K +D + +LR + +++ VP I E V IA Sbjct: 51 TIQRRDTLDYYLQPFLRKK-----VDAWVRVLLRLSLYQMLYLDRVPERAAIHEAVEIAK 105 Query: 136 DFFYGDEPKFINAVLDKVSRK 156 + +N VL + R+ Sbjct: 106 RRGHKGIAGMVNGVLRSIQRE 126 >gi|258647540|ref|ZP_05735009.1| NusB family protein [Prevotella tannerae ATCC 51259] gi|260852324|gb|EEX72193.1| NusB family protein [Prevotella tannerae ATCC 51259] Length = 309 Score = 90.9 bits (225), Expect = 6e-17, Method: Composition-based stats. Identities = 21/110 (19%), Positives = 51/110 (46%), Gaps = 1/110 (0%) Query: 52 DTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAG 111 + + + D ++ + ++R + LI + ++ W F RL + I++ Sbjct: 197 EKQEILPEYDTEDDHQFALELFQTTIERGDEMRDLIRNN-SKNWEFGRLAFMDVIIMQIA 255 Query: 112 VLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKR 161 + E++ ++P+ V +EY+ IA + +IN +LD V + + ++ Sbjct: 256 LTEMLTFPTIPLNVTFNEYLDIAKIYSTPRSSSYINGLLDHVVKYLQAEK 305 >gi|332668432|ref|YP_004451220.1| NusB antitermination factor [Haliscomenobacter hydrossis DSM 1100] gi|332337246|gb|AEE54347.1| NusB antitermination factor [Haliscomenobacter hydrossis DSM 1100] Length = 312 Score = 90.5 bits (224), Expect = 6e-17, Method: Composition-based stats. Identities = 22/112 (19%), Positives = 54/112 (48%), Gaps = 3/112 (2%) Query: 56 DVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLEL 115 + +++ +++ V + + +I L W R+ +I +++ ++EL Sbjct: 196 EAYKPNAEATVDFGELLLRKVYHEDEALLKVIEPTL-RNWDVERVAIIDMILIKMALVEL 254 Query: 116 IECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRSGCVSA 167 + S+P +V ++E+V IA ++ FIN +LD++ ++ + G +S Sbjct: 255 MTFKSIPSKVTLNEFVEIAKNYSTDKSKDFINGILDRLLKQ--LLEEGKISK 304 >gi|113474580|ref|YP_720641.1| transcription antitermination protein NusB [Trichodesmium erythraeum IMS101] gi|119390846|sp|Q118A6|NUSB_TRIEI RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|110165628|gb|ABG50168.1| NusB antitermination factor [Trichodesmium erythraeum IMS101] Length = 207 Score = 90.5 bits (224), Expect = 7e-17, Method: Composition-based stats. Identities = 26/88 (29%), Positives = 41/88 (46%), Gaps = 2/88 (2%) Query: 66 LEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEV 125 + ++ V ++ +D L+ + W RL I ILR V E++ + +V Sbjct: 115 RSYAMEVLTKVNGNRKEVDKLLQESIV-DWQIERLPRIDLDILRIAVAEMMFIG-IQKQV 172 Query: 126 IISEYVCIAHDFFYGDEPKFINAVLDKV 153 ISE V +A + D KFIN VL +V Sbjct: 173 AISEAVELAKRYSGEDGYKFINGVLRRV 200 >gi|304316972|ref|YP_003852117.1| sun protein [Thermoanaerobacterium thermosaccharolyticum DSM 571] gi|302778474|gb|ADL69033.1| sun protein [Thermoanaerobacterium thermosaccharolyticum DSM 571] Length = 447 Score = 90.5 bits (224), Expect = 8e-17, Method: Composition-based stats. Identities = 33/137 (24%), Positives = 59/137 (43%), Gaps = 13/137 (9%) Query: 20 RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79 R A + LY+I + + ++++Y D E + + I+ G ++R Sbjct: 4 RNIAFKILYEILVKKGYSNIVLNKYLNNDGIEDVE-----------KSFIKEIVFGTIER 52 Query: 80 KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139 K +D +I C T+ ++D + IL G+ +L+ VP I+E V + + Sbjct: 53 KYTLDRIIDYCSTK--DIKKIDNKVLIILEMGLFQLMYMDKVPDYAAINESVNLTKEHVG 110 Query: 140 GDEPKFINAVLDKVSRK 156 KF+NAVL R Sbjct: 111 KYASKFVNAVLRSYLRN 127 >gi|253575778|ref|ZP_04853113.1| ribosomal RNA small subunit methyltransferase B [Paenibacillus sp. oral taxon 786 str. D14] gi|251844821|gb|EES72834.1| ribosomal RNA small subunit methyltransferase B [Paenibacillus sp. oral taxon 786 str. D14] Length = 506 Score = 90.2 bits (223), Expect = 8e-17, Method: Composition-based stats. Identities = 28/143 (19%), Positives = 53/143 (37%), Gaps = 13/143 (9%) Query: 19 ARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMD 78 AR A+Q L + + Y +S D +++G + Sbjct: 55 ARSVALQVL-----------TAVEQEGAYSNLLLNGALQKSGLTGPDAGLATELVYGTIQ 103 Query: 79 RKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFF 138 R ID + +T+ ++L + ++LR +L +P ++E V +A Sbjct: 104 RLNTIDYFLEQFVTKG--LAKLAPWVRNLLRLSFYQLQYLDRIPPHAAVNEAVNLAKRKG 161 Query: 139 YGDEPKFINAVLDKVSRKEEIKR 161 + +N VL V R++E R Sbjct: 162 HQGISGMVNGVLRNVLRRKEELR 184 >gi|283769473|ref|ZP_06342369.1| transcription antitermination factor NusB [Bulleidia extructa W1219] gi|283103741|gb|EFC05127.1| transcription antitermination factor NusB [Bulleidia extructa W1219] Length = 124 Score = 90.2 bits (223), Expect = 9e-17, Method: Composition-based stats. Identities = 35/138 (25%), Positives = 51/138 (36%), Gaps = 16/138 (11%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 R + R AV +LY + I+ D D +F ++ Sbjct: 3 RSVQREKAVLSLYAYLSLPRDIHSIME-------------DSFGSLDKAD-PYFIRVVEN 48 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135 + Q I+ L E W+F RL I +IL G E V +II E V +A Sbjct: 49 AQEHIQEYTNYINQVL-ENWTFDRLGTIEKAILLIGCAEFS-LKEVAAVIIIDEAVELAK 106 Query: 136 DFFYGDEPKFINAVLDKV 153 + D + IN VLD + Sbjct: 107 TYGEADSYRLINNVLDVI 124 >gi|312898700|ref|ZP_07758090.1| ribosomal RNA small subunit methyltransferase B [Megasphaera micronuciformis F0359] gi|310620619|gb|EFQ04189.1| ribosomal RNA small subunit methyltransferase B [Megasphaera micronuciformis F0359] Length = 441 Score = 89.8 bits (222), Expect = 1e-16, Method: Composition-based stats. Identities = 24/101 (23%), Positives = 48/101 (47%), Gaps = 2/101 (1%) Query: 58 ESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIE 117 + + D ++ +++G + ++D +I + K + LD + ++LR G+ +L Sbjct: 31 KEKFTDRDRRFYTELVYGTLRSLNYVDYIIGILSSRKK--NSLDPVCLAVLRMGLYQLFF 88 Query: 118 CHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEE 158 VP +E V +A F KF+NA+L R++E Sbjct: 89 MDKVPPSAACNEAVKLARRFGNEGMAKFVNALLRNSLRQKE 129 >gi|309806415|ref|ZP_07700424.1| putative transcription antitermination protein NusB [Lactobacillus iners LactinV 03V1-b] gi|308167197|gb|EFO69367.1| putative transcription antitermination protein NusB [Lactobacillus iners LactinV 03V1-b] Length = 100 Score = 89.8 bits (222), Expect = 1e-16, Method: Composition-based stats. Identities = 22/87 (25%), Positives = 39/87 (44%) Query: 67 EWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVI 126 ++ I+ GVM K ID ++ L + W+ RL+ I IL G+ E+ + Sbjct: 11 DYAYEILQGVMKEKSSIDANLTKYLKKGWTLERLNKIDLVILEVGLFEIQNSKVIKPVSA 70 Query: 127 ISEYVCIAHDFFYGDEPKFINAVLDKV 153 ++E + + +F FIN +L Sbjct: 71 LNEALNMCDEFSSAKSKGFINGILANF 97 >gi|167768546|ref|ZP_02440599.1| hypothetical protein CLOSS21_03105 [Clostridium sp. SS2/1] gi|167710070|gb|EDS20649.1| hypothetical protein CLOSS21_03105 [Clostridium sp. SS2/1] gi|291560508|emb|CBL39308.1| ribosomal RNA small subunit methyltransferase RsmB [butyrate-producing bacterium SSC/2] Length = 447 Score = 89.4 bits (221), Expect = 1e-16, Method: Composition-based stats. Identities = 27/139 (19%), Positives = 55/139 (39%), Gaps = 12/139 (8%) Query: 20 RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79 R A+ L ++ + E L+ D +F ++ G ++R Sbjct: 5 RECALDVL----------IKVDKKEELSHIAISNVLEKYQFSEKRDRAFFTRLVEGTLER 54 Query: 80 KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139 + ID + K + ++ ++LR G+ +++ VP +E V +A + Sbjct: 55 QITIDYVADQFSKTK--IRKCKPLIRALLRMGIYQILYMDQVPDSAACNEAVKLAKKRGF 112 Query: 140 GDEPKFINAVLDKVSRKEE 158 F+N VL +SRK++ Sbjct: 113 SRLSGFVNGVLRNISRKKD 131 >gi|317498698|ref|ZP_07956990.1| ribosomal RNA small subunit methyltransferase B [Lachnospiraceae bacterium 5_1_63FAA] gi|316894040|gb|EFV16230.1| ribosomal RNA small subunit methyltransferase B [Lachnospiraceae bacterium 5_1_63FAA] Length = 447 Score = 89.4 bits (221), Expect = 1e-16, Method: Composition-based stats. Identities = 27/139 (19%), Positives = 55/139 (39%), Gaps = 12/139 (8%) Query: 20 RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79 R A+ L ++ + E L+ D +F ++ G ++R Sbjct: 5 RECALDVL----------IKVDKKEELSHIAISNVLEKYQFSEKRDRAFFTRLVEGTLER 54 Query: 80 KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139 + ID + K + ++ ++LR G+ +++ VP +E V +A + Sbjct: 55 QITIDYVADQFSKTK--IRKCKPLIRALLRMGIYQILYMDQVPDSAACNEAVKLAKKRGF 112 Query: 140 GDEPKFINAVLDKVSRKEE 158 F+N VL +SRK++ Sbjct: 113 SRLSGFVNGVLRNISRKKD 131 >gi|268611642|ref|ZP_06145369.1| sun protein [Ruminococcus flavefaciens FD-1] Length = 443 Score = 89.4 bits (221), Expect = 1e-16, Method: Composition-based stats. Identities = 28/101 (27%), Positives = 50/101 (49%), Gaps = 2/101 (1%) Query: 58 ESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIE 117 S D + + +GV++RK +D +++ + S+LD I+ +ILR G+ +L+ Sbjct: 32 NSDLSPQDKRFCTALYYGVIERKITLDHILTGLSSR--PLSKLDSIIITILRCGIYQLLY 89 Query: 118 CHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEE 158 +VP ++E V +A F +NAVL RK + Sbjct: 90 MENVPDNAAVNESVKLAKKFGKTSASGMVNAVLRNFIRKGK 130 >gi|257066525|ref|YP_003152781.1| NusB antitermination factor [Anaerococcus prevotii DSM 20548] gi|256798405|gb|ACV29060.1| NusB antitermination factor [Anaerococcus prevotii DSM 20548] Length = 127 Score = 89.4 bits (221), Expect = 2e-16, Method: Composition-based stats. Identities = 34/144 (23%), Positives = 58/144 (40%), Gaps = 21/144 (14%) Query: 15 RRGIARLAAVQALYQIDIIG-CSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVII 73 R R + +YQ I + + E + D ++ R I Sbjct: 2 NRVEQREWVFKLIYQDSISKIEDIDKALEELDL-----------------TDEDFVRKSI 44 Query: 74 HGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCI 133 ++ ID ++S L K RL +L SIL + E+ +PV V I+E V + Sbjct: 45 SSFLNNFSSIDEKLTSNLDSKRK--RLSKVLRSILYLSINEM-YFMDIPVSVSINEAVNL 101 Query: 134 AHDFFYGDEPKFINAVLDKVSRKE 157 A + D+ K +N++L + RK+ Sbjct: 102 AKKYSDEDDYKLVNSILGSIVRKD 125 >gi|298373502|ref|ZP_06983491.1| NusB family protein [Bacteroidetes oral taxon 274 str. F0058] gi|298274554|gb|EFI16106.1| NusB family protein [Bacteroidetes oral taxon 274 str. F0058] Length = 307 Score = 89.4 bits (221), Expect = 2e-16, Method: Composition-based stats. Identities = 19/94 (20%), Positives = 45/94 (47%), Gaps = 1/94 (1%) Query: 63 HVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVP 122 + E+ + H + + +IS + KW R+ + +++ + E E +P Sbjct: 204 ENEKEFVVKLSHTAFLKGDEYEQMISK-IVPKWDVERITKMDMVLMKMAIAEFKEFPLIP 262 Query: 123 VEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRK 156 +++ I+EY+ I+ + FIN +LD ++++ Sbjct: 263 IDITINEYIEISKFYSTSKSYIFINGILDTIAKE 296 >gi|323141164|ref|ZP_08076065.1| ribosomal RNA small subunit methyltransferase B [Phascolarctobacterium sp. YIT 12067] gi|322414307|gb|EFY05125.1| ribosomal RNA small subunit methyltransferase B [Phascolarctobacterium sp. YIT 12067] Length = 453 Score = 89.4 bits (221), Expect = 2e-16, Method: Composition-based stats. Identities = 24/117 (20%), Positives = 49/117 (41%), Gaps = 2/117 (1%) Query: 43 EYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDM 102 E Y A + S +D +++G + +D ++ C++ ++ Sbjct: 26 EDGAYTNIALNQYLRGSRLSDLDRRLATELVYGTVKASGTLDWYLAQCVSR--PLDKVAG 83 Query: 103 ILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEI 159 + +ILR +L+ +P ++E V +A + KF+N VL + RK+E Sbjct: 84 DILAILRISTYQLLYMTRIPASAAVNEAVKLARSVSHEGSAKFVNGVLRGLLRKQEA 140 >gi|256820792|ref|YP_003142071.1| N utilization substance protein B [Capnocytophaga ochracea DSM 7271] gi|256582375|gb|ACU93510.1| N utilization substance protein B [Capnocytophaga ochracea DSM 7271] Length = 302 Score = 89.0 bits (220), Expect = 2e-16, Method: Composition-based stats. Identities = 22/100 (22%), Positives = 49/100 (49%), Gaps = 1/100 (1%) Query: 63 HVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVP 122 + ++ ++ + + I + +T W R+ +I +L+ V E++ S+P Sbjct: 195 EEEKDFLTGLLKKAVLNDSKWEDEIITRMT-GWEKDRVAVIDSILLKMAVCEMLSFPSIP 253 Query: 123 VEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRS 162 V+V ++EY+ +A ++ FIN V+ V ++ E K+ Sbjct: 254 VKVTLNEYLELAKEYSTTKSSAFINGVMKNVHKELEEKQQ 293 >gi|332829206|gb|EGK01870.1| hypothetical protein HMPREF9455_02018 [Dysgonomonas gadei ATCC BAA-286] Length = 308 Score = 89.0 bits (220), Expect = 2e-16, Method: Composition-based stats. Identities = 28/123 (22%), Positives = 54/123 (43%), Gaps = 3/123 (2%) Query: 30 IDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISS 89 I+II + I +E + A L + D E+ ++ + + LI Sbjct: 175 IEIIESFVLKTIKRFEENKGAAQELLPM--FKDDSDREFAVKLLRESLWNGKEYRELIDK 232 Query: 90 CLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAV 149 T+ W R+ ++ I++ + E++ S+P+ V ++EY+ IA + FIN + Sbjct: 233 Y-TKNWESERIALMDMVIMQIAIGEIVSFPSIPISVTLNEYIDIAKSYSTAKSASFINGI 291 Query: 150 LDK 152 LD Sbjct: 292 LDA 294 >gi|172057934|ref|YP_001814394.1| sun protein [Exiguobacterium sibiricum 255-15] gi|171990455|gb|ACB61377.1| sun protein [Exiguobacterium sibiricum 255-15] Length = 446 Score = 89.0 bits (220), Expect = 2e-16, Method: Composition-based stats. Identities = 27/141 (19%), Positives = 61/141 (43%), Gaps = 5/141 (3%) Query: 30 IDIIGCSTTEIIS--EYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLI 87 +++ + T ++ + + + ++ + D+ + +++G + R+ +D ++ Sbjct: 1 MNVRDAAVTTLLKIGQGGAFSTISVHQMLEKRAISKADVGLYTELVYGTLSRELTLDYIL 60 Query: 88 SSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFIN 147 LT++ +LD + +LR V +L +P +I+E V IA K +N Sbjct: 61 EPFLTKQ---KKLDPFMRPLLRMSVYQLFYLDRIPDHAVINEAVEIAKTRGKPHIAKVVN 117 Query: 148 AVLDKVSRKEEIKRSGCVSAI 168 VL V R + S S + Sbjct: 118 GVLRNVLRTGKPDFSAIPSTV 138 >gi|315223935|ref|ZP_07865780.1| antitermination factor [Capnocytophaga ochracea F0287] gi|314946107|gb|EFS98111.1| antitermination factor [Capnocytophaga ochracea F0287] Length = 313 Score = 89.0 bits (220), Expect = 2e-16, Method: Composition-based stats. Identities = 23/100 (23%), Positives = 49/100 (49%), Gaps = 1/100 (1%) Query: 63 HVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVP 122 + ++ ++ + + I S +T W R+ +I +L+ V E++ S+P Sbjct: 206 EEEKDFLTGLLKKAVLNDSKWENEIISRMT-GWEKDRVAVIDSILLKMAVCEMLSFPSIP 264 Query: 123 VEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRS 162 V+V ++EY+ +A ++ FIN V+ V ++ E K+ Sbjct: 265 VKVTLNEYLELAKEYSTTKSSAFINGVMKNVHKELEEKQQ 304 >gi|292670256|ref|ZP_06603682.1| RNA methyltransferase Sun [Selenomonas noxia ATCC 43541] gi|292648208|gb|EFF66180.1| RNA methyltransferase Sun [Selenomonas noxia ATCC 43541] Length = 448 Score = 88.6 bits (219), Expect = 3e-16, Method: Composition-based stats. Identities = 24/139 (17%), Positives = 51/139 (36%), Gaps = 14/139 (10%) Query: 20 RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79 R A+Q + ++ G ++E + D + +++GV+ Sbjct: 13 RELAMQTILRVHGAGAYANVALAETLR-----------AARPTERDRRFLTELVYGVVKA 61 Query: 80 KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139 ID +I ++ + + ++LR G ++ +PV + V +A + Sbjct: 62 GDTIDYMIGKYVS---DLRKAQPAIRTLLRLGFYQIFFMDKIPVSAACNTAVELAKKYGR 118 Query: 140 GDEPKFINAVLDKVSRKEE 158 F+N VL R+ E Sbjct: 119 RGAASFVNGVLRTALREPE 137 >gi|189499780|ref|YP_001959250.1| sun protein [Chlorobium phaeobacteroides BS1] gi|189495221|gb|ACE03769.1| sun protein [Chlorobium phaeobacteroides BS1] Length = 447 Score = 88.6 bits (219), Expect = 3e-16, Method: Composition-based stats. Identities = 29/140 (20%), Positives = 55/140 (39%), Gaps = 13/140 (9%) Query: 18 IARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVM 77 AR A+ L T SE +R + D D +++GV+ Sbjct: 2 KAREIALLTL-----QETDTQAKKSEQSLHRLLNRHKPD------KNDRSLATELVNGVL 50 Query: 78 DRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDF 137 + +D +IS L+ + +L +ILR G +L+ +P + E V +A + Sbjct: 51 RYRLRLDFIIS--LSYHHDLKKAAPVLRNILRLGAYQLLFLDKIPGWAAVDECVSLAVKY 108 Query: 138 FYGDEPKFINAVLDKVSRKE 157 +N VL +++ ++ Sbjct: 109 KGRHIAGIVNGVLRRIASEK 128 >gi|262277174|ref|ZP_06054967.1| N utilization substance protein B [alpha proteobacterium HIMB114] gi|262224277|gb|EEY74736.1| N utilization substance protein B [alpha proteobacterium HIMB114] Length = 127 Score = 88.2 bits (218), Expect = 3e-16, Method: Composition-based stats. Identities = 22/90 (24%), Positives = 51/90 (56%) Query: 66 LEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEV 125 + + + G ++++ ++ ++S L+ + LD +L IL+ + EL C +P +V Sbjct: 32 IRHIKKVFKGYFEQEEQLNEILSRSLSAEIKQKNLDSLLNIILKTSIYELKFCEKIPFKV 91 Query: 126 IISEYVCIAHDFFYGDEPKFINAVLDKVSR 155 +I++Y+ + F+ D+ + +N VLD V++ Sbjct: 92 VINQYLDVTAQFYGNDQKRLVNGVLDNVAK 121 >gi|57239039|ref|YP_180175.1| putative N utilization substance protein B-like protein [Ehrlichia ruminantium str. Welgevonden] gi|58578981|ref|YP_197193.1| putative N utilization substance protein B-like protein [Ehrlichia ruminantium str. Welgevonden] gi|58617039|ref|YP_196238.1| putative N utilization substance protein B-like protein [Ehrlichia ruminantium str. Gardel] gi|57161118|emb|CAH58029.1| hypothetical protein Erum3120 [Ehrlichia ruminantium str. Welgevonden] gi|58416651|emb|CAI27764.1| Putative N utilization substance protein B homolog [Ehrlichia ruminantium str. Gardel] gi|58417607|emb|CAI26811.1| Putative N utilization substance protein B homolog [Ehrlichia ruminantium str. Welgevonden] Length = 174 Score = 88.2 bits (218), Expect = 3e-16, Method: Composition-based stats. Identities = 36/141 (25%), Positives = 66/141 (46%), Gaps = 6/141 (4%) Query: 12 LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71 ++ R AVQ Y + + ++ + + E+ +++D + Sbjct: 11 WQSKKTTTRFLAVQGTYAMTFNNYTINDLDNLIDYL-----YEMKEVLNLMYIDDQLLLK 65 Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131 II ++ +I+ I+ L EKWS R+++I SI++ + EL+ C +II+EYV Sbjct: 66 IISTMLIAFNNINSNIAGFLNEKWSIDRINLISLSIIKTAICELM-CSKTDKIIIINEYV 124 Query: 132 CIAHDFFYGDEPKFINAVLDK 152 IA E FINA+L++ Sbjct: 125 NIASQILERTEVNFINAILNQ 145 >gi|56751642|ref|YP_172343.1| transcription antitermination protein NusB [Synechococcus elongatus PCC 6301] gi|81301280|ref|YP_401488.1| transcription antitermination protein NusB [Synechococcus elongatus PCC 7942] gi|34222700|sp|Q8GIR7|NUSB_SYNE7 RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|81561842|sp|Q5N1J7|NUSB_SYNP6 RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|25019707|gb|AAN71793.1| unknown [Synechococcus elongatus PCC 7942] gi|56686601|dbj|BAD79823.1| N utilization substance protein B [Synechococcus elongatus PCC 6301] gi|81170161|gb|ABB58501.1| transcription antitermination factor NusB [Synechococcus elongatus PCC 7942] Length = 213 Score = 88.2 bits (218), Expect = 3e-16, Method: Composition-based stats. Identities = 28/122 (22%), Positives = 52/122 (42%), Gaps = 6/122 (4%) Query: 37 TTEIISEYETYRFCADTELDVESVYLHVDLEWFRV----IIHGVMDRKQHIDLLISSCLT 92 E+I + LD+ D E R ++ V + ++ ID ++ + Sbjct: 80 LQEVIEMAQAAINRTGNALDLPEWVQLTDREEVRKFGGRLVLQVSNNRERIDRTLNDVMV 139 Query: 93 EKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDK 152 W R+ + ILR E++ P +V I+E V +A+ + + +FIN VL + Sbjct: 140 -DWQLHRVPRLDQDILRLAAAEILF-LGTPEQVAINEAVELANRYSDEEGRRFINGVLRR 197 Query: 153 VS 154 +S Sbjct: 198 LS 199 >gi|139436934|ref|ZP_01771094.1| Hypothetical protein COLAER_00067 [Collinsella aerofaciens ATCC 25986] gi|133776581|gb|EBA40401.1| Hypothetical protein COLAER_00067 [Collinsella aerofaciens ATCC 25986] Length = 118 Score = 88.2 bits (218), Expect = 4e-16, Method: Composition-based stats. Identities = 18/64 (28%), Positives = 31/64 (48%), Gaps = 2/64 (3%) Query: 99 RLDMILCSILRAGVLELIE--CHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRK 156 R+ ++LR V E+ V ++I+E V +A + F+N VL K++R Sbjct: 2 RMPGADRNLLRIAVYEMRFLTDEEVSDAIVINEAVELAKAYGTDQSASFVNGVLGKIARS 61 Query: 157 EEIK 160 EE+ Sbjct: 62 EELP 65 >gi|167753516|ref|ZP_02425643.1| hypothetical protein ALIPUT_01791 [Alistipes putredinis DSM 17216] gi|167658141|gb|EDS02271.1| hypothetical protein ALIPUT_01791 [Alistipes putredinis DSM 17216] Length = 312 Score = 88.2 bits (218), Expect = 4e-16, Method: Composition-based stats. Identities = 26/111 (23%), Positives = 46/111 (41%), Gaps = 5/111 (4%) Query: 58 ESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIE 117 D E+ + + + I T W R+ + I+ + EL+ Sbjct: 200 PEFKSDEDAEFVKTLFEKTLINYNERLEYIEKF-TRNWDVERIVFMDNLIMATAITELVS 258 Query: 118 CHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVS----RKEEIKRSGC 164 S+PV+V + EY+ IA + FIN VLDK+ + ++K++G Sbjct: 259 FPSIPVKVTLDEYIDIAKFYSTPGSSTFINGVLDKIVEALTEEGKLKKTGR 309 >gi|255657701|ref|ZP_05403110.1| ribosomal RNA small subunit methyltransferase B [Mitsuokella multacida DSM 20544] gi|260849889|gb|EEX69896.1| ribosomal RNA small subunit methyltransferase B [Mitsuokella multacida DSM 20544] Length = 452 Score = 87.8 bits (217), Expect = 4e-16, Method: Composition-based stats. Identities = 28/153 (18%), Positives = 55/153 (35%), Gaps = 15/153 (9%) Query: 18 IARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVM 77 AR AV+ LY++ G +++ + D + +++G + Sbjct: 3 KARETAVRILYEVHENGAYANVALAKALRQLDLGEQ-----------DRRFVTELVYGAV 51 Query: 78 DRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDF 137 +D ++ ++ ++ + ILR G+ ++ VP + V +A Sbjct: 52 KAGGTLDWILRRYVSR--PVRKIQPFVREILRLGLYQIFYLDKVPASAACNTAVDLAKGM 109 Query: 138 FYGDEPKFINAVLDKVSRKEEIK--RSGCVSAI 168 F+NAVL R+ E SG A Sbjct: 110 GVKGLSGFVNAVLRTAVREPEKAAFPSGKGHAT 142 >gi|302392192|ref|YP_003828012.1| sun protein [Acetohalobium arabaticum DSM 5501] gi|302204269|gb|ADL12947.1| sun protein [Acetohalobium arabaticum DSM 5501] Length = 448 Score = 87.8 bits (217), Expect = 5e-16, Method: Composition-based stats. Identities = 30/139 (21%), Positives = 62/139 (44%), Gaps = 13/139 (9%) Query: 20 RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79 R AV+A+Y+++ G + I++ AD D +I+G + Sbjct: 6 RQTAVEAVYRVNEEGAYSNLILNHLFKKYNLADQ-----------DRGLATELIYGSLRM 54 Query: 80 KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139 + H+D +++ +++D +ILR G+ ++ S+P V +E V +A D+ + Sbjct: 55 RNHLDWILNQFADR--RVNKMDKWTRNILRLGLYQIRFLDSIPDAVACNETVELAKDYQH 112 Query: 140 GDEPKFINAVLDKVSRKEE 158 F+N +L + R + Sbjct: 113 SGAAGFVNGILRSILRSLD 131 >gi|238924695|ref|YP_002938211.1| sun protein [Eubacterium rectale ATCC 33656] gi|238876370|gb|ACR76077.1| sun protein [Eubacterium rectale ATCC 33656] Length = 469 Score = 87.8 bits (217), Expect = 5e-16, Method: Composition-based stats. Identities = 26/139 (18%), Positives = 57/139 (41%), Gaps = 12/139 (8%) Query: 20 RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79 R A++ L +I+ G + ++ + LD D + ++ G ++ Sbjct: 42 RELALEMLIEINERGAFSHIVLR----------SVLDKYQYLSKQDRAFMTRLVDGTIEY 91 Query: 80 KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139 +D +I S K ++ + ++LR V ++ +VP + +E V +A + Sbjct: 92 MLQLDYIIDSFSKTK--VRKMKPFIRNLLRMSVYQIKYMDAVPDSAVCNEAVKLAKRHKF 149 Query: 140 GDEPKFINAVLDKVSRKEE 158 F+N VL ++R + Sbjct: 150 AQLSGFVNGVLRNIARNID 168 >gi|209525659|ref|ZP_03274196.1| NusB antitermination factor [Arthrospira maxima CS-328] gi|209493828|gb|EDZ94146.1| NusB antitermination factor [Arthrospira maxima CS-328] Length = 209 Score = 87.8 bits (217), Expect = 5e-16, Method: Composition-based stats. Identities = 25/96 (26%), Positives = 44/96 (45%), Gaps = 2/96 (2%) Query: 67 EWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVI 126 + I+ + ++ +D + + W SRL I ILR V EL+ V ++ Sbjct: 114 SYAVKILVELNTHREAVDSSLEEAMV-DWQLSRLPRIDRDILRIAVTELLY-LGVQEQIA 171 Query: 127 ISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRS 162 ++E V +A + D +FIN VL +V + + S Sbjct: 172 VNEAVELAKRYSDQDSYRFINGVLRRVVDHLKTESS 207 >gi|160939810|ref|ZP_02087157.1| hypothetical protein CLOBOL_04701 [Clostridium bolteae ATCC BAA-613] gi|158437244|gb|EDP15009.1| hypothetical protein CLOBOL_04701 [Clostridium bolteae ATCC BAA-613] Length = 455 Score = 87.5 bits (216), Expect = 5e-16, Method: Composition-based stats. Identities = 28/141 (19%), Positives = 54/141 (38%), Gaps = 16/141 (11%) Query: 20 RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79 R + L TE++ + + L D + + G ++ Sbjct: 12 REIVLDIL----------TEVLEQGAFVHLVLNQALQKYQYLGKADRSFITRAVEGTLEY 61 Query: 80 KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA--HDF 137 ID +I+ K +++ + S+LR V +++ VP + +E V +A F Sbjct: 62 LIQIDEVINRYSKTK--INKMKPFIRSLLRMSVYQILYMDRVPDSAVCNEAVKMAVKRHF 119 Query: 138 FYGDEPKFINAVLDKVSRKEE 158 F+N VL +SR++E Sbjct: 120 SGLK--GFVNGVLRTISREKE 138 >gi|331004329|ref|ZP_08327804.1| hypothetical protein HMPREF0491_02666 [Lachnospiraceae oral taxon 107 str. F0167] gi|330411395|gb|EGG90810.1| hypothetical protein HMPREF0491_02666 [Lachnospiraceae oral taxon 107 str. F0167] Length = 444 Score = 87.5 bits (216), Expect = 5e-16, Method: Composition-based stats. Identities = 27/116 (23%), Positives = 51/116 (43%), Gaps = 4/116 (3%) Query: 43 EYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDM 102 E E D L+ S D +F +HGV++ + +D +I K R+ Sbjct: 20 EKEYSHKVIDMALEKYSYLSKSDRGFFSKAVHGVIEYRLQLDYIIKKYNNGK----RIKP 75 Query: 103 ILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEE 158 ++ ILR + +++ VP +I+E V + F+N +L K+S +++ Sbjct: 76 VIREILRMSIYQMLYMDRVPDRAVINEAVNLVKLRRLPGLTGFVNGILRKISGEKD 131 >gi|291526150|emb|CBK91737.1| ribosomal RNA small subunit methyltransferase RsmB [Eubacterium rectale DSM 17629] Length = 469 Score = 87.5 bits (216), Expect = 6e-16, Method: Composition-based stats. Identities = 26/139 (18%), Positives = 57/139 (41%), Gaps = 12/139 (8%) Query: 20 RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79 R A++ L +I+ G + ++ + LD D + ++ G ++ Sbjct: 42 RELALEMLIEINERGAFSHIVLR----------SVLDKYQYLSKQDRAFMTRLVDGTIEY 91 Query: 80 KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139 +D +I S K ++ + ++LR V ++ +VP + +E V +A + Sbjct: 92 MLQLDYIIDSFSKTK--VRKMKPFIRNLLRMSVYQIKYMDAVPDSAVCNEAVKLAKRHKF 149 Query: 140 GDEPKFINAVLDKVSRKEE 158 F+N VL ++R + Sbjct: 150 AQLSGFVNGVLRNIARNID 168 >gi|260891342|ref|ZP_05902605.1| transcription antitermination factor NusB [Leptotrichia hofstadii F0254] gi|260858725|gb|EEX73225.1| transcription antitermination factor NusB [Leptotrichia hofstadii F0254] Length = 138 Score = 87.5 bits (216), Expect = 6e-16, Method: Composition-based stats. Identities = 29/147 (19%), Positives = 63/147 (42%), Gaps = 12/147 (8%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 R R + L++ ++I + I+E E++ ++++ R I Sbjct: 3 RREIREEIFKLLFEYELIDNDIEKRINETIA----------EENLKRDEEIDFLRSYITE 52 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135 +++ K + I L W++ RL I +L+ E+ + E+ I+E + IA Sbjct: 53 IIENKDILTDRIRQVLD-GWTYERLGTIEKVLLKISFYEIT-IKDIGYEIAINEVLEIAK 110 Query: 136 DFFYGDEPKFINAVLDKVSRKEEIKRS 162 + Y D F+N +L K+ + + ++ Sbjct: 111 KYSYNDTKDFLNGILAKLVQNIKDEKQ 137 >gi|291527116|emb|CBK92702.1| ribosomal RNA small subunit methyltransferase RsmB [Eubacterium rectale M104/1] Length = 469 Score = 87.5 bits (216), Expect = 6e-16, Method: Composition-based stats. Identities = 26/139 (18%), Positives = 57/139 (41%), Gaps = 12/139 (8%) Query: 20 RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79 R A++ L +I+ G + ++ + LD D + ++ G ++ Sbjct: 42 RELALEMLIEINERGAFSHIVLR----------SVLDKYQYLSKQDRAFMTRLVDGTIEY 91 Query: 80 KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139 +D +I S K ++ + ++LR V ++ +VP + +E V +A + Sbjct: 92 MLQLDYIIDSFSKTK--VRKMKPFIRNLLRMSVYQIKYMDAVPDSAVCNEAVKLAKRHKF 149 Query: 140 GDEPKFINAVLDKVSRKEE 158 F+N VL ++R + Sbjct: 150 AQLSGFVNGVLRNIARNID 168 >gi|188997200|ref|YP_001931451.1| NusB antitermination factor [Sulfurihydrogenibium sp. YO3AOP1] gi|188932267|gb|ACD66897.1| NusB antitermination factor [Sulfurihydrogenibium sp. YO3AOP1] Length = 168 Score = 87.5 bits (216), Expect = 6e-16, Method: Composition-based stats. Identities = 35/180 (19%), Positives = 73/180 (40%), Gaps = 24/180 (13%) Query: 3 IQDNKKDLKLSHRR--GIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESV 60 ++ K LK +R AR +++ L+ D ++ E+ + Sbjct: 1 MKKKNKSLKFLRKRLLKAARDLSMRILFAYDFRKEDLFNVLEEFLNTK-----------K 49 Query: 61 YLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELI---- 116 + E+ +++ + Q ID +I S L + W F R+ I ++LR GV EL+ Sbjct: 50 FSPEIKEYVLKVVNFYNENSQEIDDIIKSHL-KNWRFERIGYIERAVLRLGVSELLIIHS 108 Query: 117 -----ECHSVPVEVIISEYVCIAHDFFYGD-EPKFINAVLDKVSRKEEIKRSGCVSAITQ 170 E + ++ + + + + KF+N +L K++++ E + +TQ Sbjct: 109 KEESKELKDKEIRILFLDLLDLVECYTNSKLSVKFVNGILGKINKELEQNENSIHIGLTQ 168 >gi|146319474|ref|YP_001199186.1| transcription termination factor [Streptococcus suis 05ZYH33] gi|145690280|gb|ABP90786.1| Transcription termination factor [Streptococcus suis 05ZYH33] Length = 64 Score = 87.5 bits (216), Expect = 6e-16, Method: Composition-based stats. Identities = 16/58 (27%), Positives = 30/58 (51%) Query: 102 MILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEI 159 MI +I+R G+ E++ P V ++E + +A +F KF+N VL + + + Sbjct: 1 MIDKNIMRLGLFEILHFEETPDRVAVNEAIELAKEFSDESSAKFVNGVLSQFIKARSL 58 >gi|313894854|ref|ZP_07828414.1| ribosomal RNA small subunit methyltransferase B [Selenomonas sp. oral taxon 137 str. F0430] gi|312976535|gb|EFR41990.1| ribosomal RNA small subunit methyltransferase B [Selenomonas sp. oral taxon 137 str. F0430] Length = 451 Score = 87.5 bits (216), Expect = 6e-16, Method: Composition-based stats. Identities = 27/153 (17%), Positives = 55/153 (35%), Gaps = 19/153 (12%) Query: 12 LSHRRGIA------RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVD 65 ++ R A R A+Q L ++ + G + D D Sbjct: 1 MTENRYAADKIDPVRELAMQVLTEVHVDGAYANVALVRAMRAAKLPDR-----------D 49 Query: 66 LEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEV 125 + +++G + +D +++ L + +R+ + +LR G+ ++ VP Sbjct: 50 RRFLTELVYGTVKAGDTLDYILAKYLRDGK--ARIKPQIRELLRLGIYQIFFMDKVPASA 107 Query: 126 IISEYVCIAHDFFYGDEPKFINAVLDKVSRKEE 158 + V +A F+NAVL R+ E Sbjct: 108 ACNTAVELAKKHGKRGADSFVNAVLRTAVREPE 140 >gi|293363740|ref|ZP_06610483.1| transcription antitermination factor NusB [Mycoplasma alligatoris A21JP2] gi|292552705|gb|EFF41472.1| transcription antitermination factor NusB [Mycoplasma alligatoris A21JP2] Length = 150 Score = 87.5 bits (216), Expect = 6e-16, Method: Composition-based stats. Identities = 32/151 (21%), Positives = 61/151 (40%), Gaps = 24/151 (15%) Query: 10 LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF 69 +K R +R +Q +Y+ ++ I + + F ++L Sbjct: 1 MKYKKTRRKSREEKIQVIYRFELFD-EVINISQSFVEFDFLDPSQL-------------- 45 Query: 70 RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISE 129 + G+ I +I+S L W++ R+ + ++L EL +P +++I+E Sbjct: 46 -KFLEGIEKNYVFIKKIINSFLNTDWTWHRIPPFIRAVLINATAELFA---IPPKIVINE 101 Query: 130 YVCIAHDFF-----YGDEPKFINAVLDKVSR 155 V I DFF KF+NA+L V + Sbjct: 102 AVEITKDFFCMTEKDQKFYKFVNAILQNVYK 132 >gi|262037941|ref|ZP_06011361.1| transcription antitermination factor NusB [Leptotrichia goodfellowii F0264] gi|261748019|gb|EEY35438.1| transcription antitermination factor NusB [Leptotrichia goodfellowii F0264] Length = 136 Score = 87.5 bits (216), Expect = 6e-16, Method: Composition-based stats. Identities = 27/143 (18%), Positives = 65/143 (45%), Gaps = 12/143 (8%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 R R + L++ ++I + I+E E +++ + + Sbjct: 3 RREIREEIFKLLFEKELIDNDIDKRINEVIEENKIKKEEQ----------IDFLKSYVTE 52 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135 ++++++ + I S L E W++ RL + ++L+ E+ ++ E+ I+E + IA Sbjct: 53 IVEKEEILVEEIKSIL-EGWTYERLGTLEKALLKIAFYEIT-IKNIGYEIAINEVLEIAK 110 Query: 136 DFFYGDEPKFINAVLDKVSRKEE 158 + Y D +F+N +L ++ +K Sbjct: 111 KYSYDDTKEFLNGILAQLVKKNN 133 >gi|284051645|ref|ZP_06381855.1| transcription antitermination protein NusB [Arthrospira platensis str. Paraca] gi|291566673|dbj|BAI88945.1| transcription antitermination protein NusB [Arthrospira platensis NIES-39] Length = 210 Score = 87.1 bits (215), Expect = 7e-16, Method: Composition-based stats. Identities = 23/96 (23%), Positives = 45/96 (46%), Gaps = 2/96 (2%) Query: 67 EWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVI 126 + I+ + ++ +D + + + W RL I ILR V EL+ V ++ Sbjct: 114 SYAVKILVELNTHREALDSCLEAAMV-DWQLGRLPHIDRDILRIAVTELLYMG-VQEQIA 171 Query: 127 ISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRS 162 ++E V +A + + +FIN VL +V + + + S Sbjct: 172 VNEAVELAKRYSDHNSYRFINGVLRRVVDQMKTQSS 207 >gi|225418642|ref|ZP_03761831.1| hypothetical protein CLOSTASPAR_05866 [Clostridium asparagiforme DSM 15981] gi|225041829|gb|EEG52075.1| hypothetical protein CLOSTASPAR_05866 [Clostridium asparagiforme DSM 15981] Length = 457 Score = 87.1 bits (215), Expect = 7e-16, Method: Composition-based stats. Identities = 24/138 (17%), Positives = 55/138 (39%), Gaps = 12/138 (8%) Query: 20 RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79 R + L ++ G ++++ LD D + + G ++ Sbjct: 12 REIVLDILMEVLERGSFVHMVLNQ----------ALDKYQYLDKADRAFITRLTEGTLEY 61 Query: 80 KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139 ID +I+ K ++ ++ ++LR V +++ VP + +E V +A + Sbjct: 62 LIQIDAIINQYSKTK--TQKMKPVIRNLLRLSVYQILYMDRVPDSAVCNEAVKLAAKRRF 119 Query: 140 GDEPKFINAVLDKVSRKE 157 F+N VL ++R++ Sbjct: 120 EGLKGFVNGVLRTIAREK 137 >gi|255014272|ref|ZP_05286398.1| putative N utilization substance protein [Bacteroides sp. 2_1_7] gi|256841510|ref|ZP_05547017.1| conserved hypothetical protein [Parabacteroides sp. D13] gi|301309371|ref|ZP_07215313.1| NusB family protein [Bacteroides sp. 20_3] gi|256737353|gb|EEU50680.1| conserved hypothetical protein [Parabacteroides sp. D13] gi|300832460|gb|EFK63088.1| NusB family protein [Bacteroides sp. 20_3] Length = 308 Score = 87.1 bits (215), Expect = 7e-16, Method: Composition-based stats. Identities = 21/125 (16%), Positives = 51/125 (40%), Gaps = 3/125 (2%) Query: 30 IDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISS 89 I+I+ + I ++E + L + D + + + + + I Sbjct: 175 IEIVETFALKTIKKFEEKKGSKQALLPMFKDL--EDKAFAIKLFRQSLLKGKEYRERIDK 232 Query: 90 CLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAV 149 + + W R+ + I++ + E++ ++P+ V ++EY+ A + FIN + Sbjct: 233 HM-KNWETERIANMDLIIMQVALAEILSFPTIPINVTLNEYIDAAKYYSTPKSGTFINGI 291 Query: 150 LDKVS 154 LD + Sbjct: 292 LDSIV 296 >gi|22298329|ref|NP_681576.1| transcription antitermination protein NusB [Thermosynechococcus elongatus BP-1] gi|32171633|sp|Q8DKS0|NUSB_THEEB RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|22294508|dbj|BAC08338.1| tll0787 [Thermosynechococcus elongatus BP-1] Length = 212 Score = 87.1 bits (215), Expect = 7e-16, Method: Composition-based stats. Identities = 19/100 (19%), Positives = 45/100 (45%), Gaps = 2/100 (2%) Query: 67 EWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVI 126 + ++ + + I+ L++ + W RL + +I+ V+E+ V +V Sbjct: 115 AYAIALLRCLQRYQNEIEELVNRSMV-DWQLERLTQLDRAIIEIAVVEMRY-LEVAKQVA 172 Query: 127 ISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRSGCVS 166 I+E + +A + +FIN VL ++S + ++ + Sbjct: 173 INEAIELAKRYSDEGSHRFINGVLRRISEALDPAQAATGN 212 >gi|262383321|ref|ZP_06076457.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B] gi|262294219|gb|EEY82151.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B] Length = 308 Score = 87.1 bits (215), Expect = 8e-16, Method: Composition-based stats. Identities = 21/125 (16%), Positives = 51/125 (40%), Gaps = 3/125 (2%) Query: 30 IDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISS 89 I+I+ + I ++E + L + D + + + + + I Sbjct: 175 IEIVETFALKTIKKFEEKKGSKQALLPMFKDL--EDKAFAIKLFRQSLLKGKEYRERIDK 232 Query: 90 CLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAV 149 + + W R+ + I++ + E++ ++P+ V ++EY+ A + FIN + Sbjct: 233 HM-KNWETERIANMDLIIMQVALAEILSFPTIPINVTLNEYIDAAKYYSTPKSGTFINGI 291 Query: 150 LDKVS 154 LD + Sbjct: 292 LDSIV 296 >gi|150008472|ref|YP_001303215.1| putative N utilization substance protein [Parabacteroides distasonis ATCC 8503] gi|298376259|ref|ZP_06986215.1| NusB family protein [Bacteroides sp. 3_1_19] gi|149936896|gb|ABR43593.1| putative N utilization substance protein [Parabacteroides distasonis ATCC 8503] gi|298267296|gb|EFI08953.1| NusB family protein [Bacteroides sp. 3_1_19] Length = 308 Score = 87.1 bits (215), Expect = 8e-16, Method: Composition-based stats. Identities = 21/125 (16%), Positives = 51/125 (40%), Gaps = 3/125 (2%) Query: 30 IDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISS 89 I+I+ + I ++E + L + D + + + + + I Sbjct: 175 IEIVETFALKTIKKFEEKKGSKQALLPMFKDL--EDKAFAIKLFRQSLLKGKEYRERIDK 232 Query: 90 CLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAV 149 + + W R+ + I++ + E++ ++P+ V ++EY+ A + FIN + Sbjct: 233 HM-KNWETERIANMDLIIMQVALAEILSFPTIPINVTLNEYIDAAKYYSTPKSGTFINGI 291 Query: 150 LDKVS 154 LD + Sbjct: 292 LDSIV 296 >gi|294155614|ref|YP_003559998.1| transcription anti-termination factor NusB [Mycoplasma crocodyli MP145] gi|291600060|gb|ADE19556.1| transcription anti-termination factor NusB [Mycoplasma crocodyli MP145] Length = 150 Score = 87.1 bits (215), Expect = 8e-16, Method: Composition-based stats. Identities = 29/151 (19%), Positives = 65/151 (43%), Gaps = 24/151 (15%) Query: 10 LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF 69 +++ R R +Q LY+ ++ I+ ++ + F ++ ++ Sbjct: 1 MEVKKSRRQNREEVIQVLYRFELFNEKIDAAIA-FQEFSFLSNEQV-------------- 45 Query: 70 RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISE 129 I + + + +I+ L + W++ R+ ++ +IL EL ++P ++I+E Sbjct: 46 -KFIEKIDNNYDFLKSIIAKFLNQNWAWLRIPPLIKAILINASAELF---TIPPRIVINE 101 Query: 130 YVCIAHDFF-----YGDEPKFINAVLDKVSR 155 V I D+F KF+NA+L V + Sbjct: 102 AVEITKDYFCMTPDDDKYYKFVNAILQNVYK 132 >gi|225377868|ref|ZP_03755089.1| hypothetical protein ROSEINA2194_03527 [Roseburia inulinivorans DSM 16841] gi|225210306|gb|EEG92660.1| hypothetical protein ROSEINA2194_03527 [Roseburia inulinivorans DSM 16841] Length = 440 Score = 87.1 bits (215), Expect = 8e-16, Method: Composition-based stats. Identities = 26/120 (21%), Positives = 48/120 (40%), Gaps = 2/120 (1%) Query: 37 TTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWS 96 E+ E + LD + + + G + +D +I+ K Sbjct: 15 LMEVTKEGSYSHLVIRSVLDKYQYLEKKERAFITRVSEGTIQYMIELDYIINRF--SKVK 72 Query: 97 FSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRK 156 +++ ++ +ILR V +L SVP + +E V +A +G F+N VL +SR Sbjct: 73 VNKMKPVIRNILRMSVYQLKYMDSVPDSAVCNEAVKLAKRKGFGSLSGFVNGVLRNISRN 132 >gi|322384328|ref|ZP_08058026.1| RNA-binding Sun-like protein/16S rRNA adenosyl-L-methionine-dependent methyltransferase-like protein [Paenibacillus larvae subsp. larvae B-3650] gi|321150830|gb|EFX44267.1| RNA-binding Sun-like protein/16S rRNA adenosyl-L-methionine-dependent methyltransferase-like protein [Paenibacillus larvae subsp. larvae B-3650] Length = 461 Score = 86.7 bits (214), Expect = 9e-16, Method: Composition-based stats. Identities = 29/141 (20%), Positives = 53/141 (37%), Gaps = 13/141 (9%) Query: 17 GIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGV 76 AR AA+Q L E+ E+ + L + D I++G Sbjct: 14 RTAREAALQVL----------LEVEKEHAYSNLMLNKVLR-HADLSRQDAGLATEIVYGT 62 Query: 77 MDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHD 136 + R ID ++ + + +L+ + +LR +L +P ++E V IA Sbjct: 63 IQRLNTIDCFLARFVKK--RLDKLEPWVKCLLRLSFYQLYYLDRIPDHAAVNEAVKIAKK 120 Query: 137 FFYGDEPKFINAVLDKVSRKE 157 + +N VL V R++ Sbjct: 121 RGHQGISGMVNGVLRNVIRQK 141 >gi|206976730|ref|ZP_03237634.1| sun protein [Bacillus cereus H3081.97] gi|206745040|gb|EDZ56443.1| sun protein [Bacillus cereus H3081.97] Length = 444 Score = 86.3 bits (213), Expect = 1e-15, Method: Composition-based stats. Identities = 29/141 (20%), Positives = 55/141 (39%), Gaps = 16/141 (11%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 R R A+ L Q++ G + ++ L +S D+ I++G Sbjct: 2 RQNVRELALDGLIQVEKSGAYSNLLL-----------NNLIEKSTIDRKDIGLLTEIVYG 50 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135 + R+ +D + L +K ++ + +LR + ++I VP I E V IA Sbjct: 51 TIQRRDTLDYYLQPFLKKK-----VEAWVRVLLRLSLYQMIYLDRVPERAAIHEAVEIAK 105 Query: 136 DFFYGDEPKFINAVLDKVSRK 156 + +N VL + R+ Sbjct: 106 RRGHKGIAGMVNGVLRSIQRE 126 >gi|217961285|ref|YP_002339853.1| sun protein [Bacillus cereus AH187] gi|222097310|ref|YP_002531367.1| sun protein [Bacillus cereus Q1] gi|217064955|gb|ACJ79205.1| sun protein [Bacillus cereus AH187] gi|221241368|gb|ACM14078.1| sun protein [Bacillus cereus Q1] Length = 444 Score = 86.3 bits (213), Expect = 1e-15, Method: Composition-based stats. Identities = 29/141 (20%), Positives = 55/141 (39%), Gaps = 16/141 (11%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 R R A+ L Q++ G + ++ L +S D+ I++G Sbjct: 2 RQNVRELALDGLIQVEKSGAYSNLLL-----------NNLIEKSTIDRKDIGLLTEIVYG 50 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135 + R+ +D + L +K ++ + +LR + ++I VP I E V IA Sbjct: 51 TIQRRDTLDYYLQPFLKKK-----VEAWVRVLLRLSLYQMIYLDRVPERAAIHEAVEIAK 105 Query: 136 DFFYGDEPKFINAVLDKVSRK 156 + +N VL + R+ Sbjct: 106 RRGHKGIAGMVNGVLRSIQRE 126 >gi|212696078|ref|ZP_03304206.1| hypothetical protein ANHYDRO_00614 [Anaerococcus hydrogenalis DSM 7454] gi|212676707|gb|EEB36314.1| hypothetical protein ANHYDRO_00614 [Anaerococcus hydrogenalis DSM 7454] Length = 129 Score = 86.3 bits (213), Expect = 1e-15, Method: Composition-based stats. Identities = 31/142 (21%), Positives = 58/142 (40%), Gaps = 16/142 (11%) Query: 15 RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74 R R + +++ I +I + L D F+ + Sbjct: 2 NRAKQRDWVFKIIFENQIKN--IDDIDQAIINHDLD-----------LKRDSFLFQSL-K 47 Query: 75 GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134 ++ ++I+ ++ + + S RL + +IL V E+ +PV V I+E V I+ Sbjct: 48 SYIENFKNIEDILINQIGLS-SLKRLAKVDRAILFLSVNEMKY-LDIPVSVSINEAVNIS 105 Query: 135 HDFFYGDEPKFINAVLDKVSRK 156 + D KFIN+VL K++ K Sbjct: 106 KKYSTSDGYKFINSVLGKIAEK 127 >gi|328479786|gb|EGF48904.1| transcription antitermination protein NusB [Lactobacillus rhamnosus MTCC 5462] Length = 145 Score = 86.3 bits (213), Expect = 1e-15, Method: Composition-based stats. Identities = 24/89 (26%), Positives = 43/89 (48%), Gaps = 6/89 (6%) Query: 52 DTELDVESVYLHV---DLE---WFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILC 105 + E D +VY V D E + ++ GV+ + +D ++ L + W+ SRL Sbjct: 41 NPEADKNAVYAEVLPKDTEVPSYLTALVEGVLANQAALDAALTPQLKKGWTLSRLTKPDL 100 Query: 106 SILRAGVLELIECHSVPVEVIISEYVCIA 134 ILR G+ E+ ++P I+E + +A Sbjct: 101 IILRLGLYEIRYEEAMPEAAAINEAINLA 129 >gi|324327763|gb|ADY23023.1| 16S rRNA methyltransferase B [Bacillus thuringiensis serovar finitimus YBT-020] Length = 444 Score = 86.3 bits (213), Expect = 1e-15, Method: Composition-based stats. Identities = 29/141 (20%), Positives = 55/141 (39%), Gaps = 16/141 (11%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 R R A+ L Q++ G + ++ L +S D+ I++G Sbjct: 2 RQNVRELALDGLIQVEKSGAYSNLLL-----------NNLIEKSTIDRKDIGLLTEIVYG 50 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135 + R+ +D + L +K ++ + +LR + ++I VP I E V IA Sbjct: 51 TIQRRDTLDYYLQPFLKKK-----VEAWVRVLLRLSLYQMIYLDRVPERAAIHEAVEIAK 105 Query: 136 DFFYGDEPKFINAVLDKVSRK 156 + +N VL + R+ Sbjct: 106 RRGHKGIAGMVNGVLRSIQRE 126 >gi|52141623|ref|YP_085206.1| sun protein [Bacillus cereus E33L] gi|51975092|gb|AAU16642.1| sun protein [Bacillus cereus E33L] Length = 444 Score = 86.3 bits (213), Expect = 1e-15, Method: Composition-based stats. Identities = 29/141 (20%), Positives = 55/141 (39%), Gaps = 16/141 (11%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 R R A+ L Q++ G + ++ L +S D+ I++G Sbjct: 2 RQNVRELALDGLIQVEKSGAYSNLLL-----------NNLIEKSTIDRKDIGLLTEIVYG 50 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135 + R+ +D + L +K ++ + +LR + ++I VP I E V IA Sbjct: 51 TIQRRDTLDYYLQPFLKKK-----VEAWVRVLLRLSLYQMIYLDRVPERAAIHEAVEIAK 105 Query: 136 DFFYGDEPKFINAVLDKVSRK 156 + +N VL + R+ Sbjct: 106 RRGHKGIAGMVNGVLRSIQRE 126 >gi|30021953|ref|NP_833584.1| sun protein [Bacillus cereus ATCC 14579] gi|29897509|gb|AAP10785.1| 16S rRNA m(5)C 967 methyltransferase [Bacillus cereus ATCC 14579] Length = 444 Score = 86.3 bits (213), Expect = 1e-15, Method: Composition-based stats. Identities = 29/141 (20%), Positives = 55/141 (39%), Gaps = 16/141 (11%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 R R A+ L Q++ G + ++ L +S D+ I++G Sbjct: 2 RQNVRELALDGLIQVEKSGAYSNLLL-----------NNLIEKSAIDRKDIGLLTEIVYG 50 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135 + R+ +D + L +K ++ + +LR + ++I VP I E V IA Sbjct: 51 TIQRRDTLDYYLQPFLKKK-----VEAWVRVLLRLSLYQMIYLDRVPERAAIHEAVEIAK 105 Query: 136 DFFYGDEPKFINAVLDKVSRK 156 + +N VL + R+ Sbjct: 106 RRGHKGIAGMVNGVLRSIQRE 126 >gi|167760433|ref|ZP_02432560.1| hypothetical protein CLOSCI_02807 [Clostridium scindens ATCC 35704] gi|167661932|gb|EDS06062.1| hypothetical protein CLOSCI_02807 [Clostridium scindens ATCC 35704] Length = 436 Score = 86.3 bits (213), Expect = 1e-15, Method: Composition-based stats. Identities = 30/139 (21%), Positives = 54/139 (38%), Gaps = 12/139 (8%) Query: 20 RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79 R + L Q I + E LD + + +++G ++ Sbjct: 8 RELVLDILLQ----------ITRDGEYSHIALKNVLDKYQYLDKKERAFITRVVNGTLEH 57 Query: 80 KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139 ID +I+ K ++ ++ I+R+ V +L SVP +++E V +A + Sbjct: 58 MIEIDYIINQF--SKVKVQKMKPVIRMIIRSAVYQLKYMDSVPDSAVLNEAVKLASKRGF 115 Query: 140 GDEPKFINAVLDKVSRKEE 158 F+N VL VSR E Sbjct: 116 STLKGFVNGVLRSVSRNLE 134 >gi|167747881|ref|ZP_02420008.1| hypothetical protein ANACAC_02610 [Anaerostipes caccae DSM 14662] gi|167652703|gb|EDR96832.1| hypothetical protein ANACAC_02610 [Anaerostipes caccae DSM 14662] Length = 448 Score = 86.3 bits (213), Expect = 1e-15, Method: Composition-based stats. Identities = 31/139 (22%), Positives = 60/139 (43%), Gaps = 12/139 (8%) Query: 20 RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79 R A+ L +ID E ++ +T L+ D +F + G ++R Sbjct: 5 RELALDVLMKID---------KKEELSHIAIGET-LEKYQFSEKKDRAFFTRLCQGTLER 54 Query: 80 KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139 + ID +I L K ++ ++ S+LR G +++ +P +E V +A + Sbjct: 55 RLTIDYVID--LYSKTKVRKMKPLVRSLLRMGACQILFMDHIPDSAACNECVKLAKKRGF 112 Query: 140 GDEPKFINAVLDKVSRKEE 158 F+N VL +SR+++ Sbjct: 113 SKLSGFVNGVLRTISRQKQ 131 >gi|206971310|ref|ZP_03232261.1| ribosomal RNA small subunit methyltransferase B [Bacillus cereus AH1134] gi|218233863|ref|YP_002368666.1| sun protein [Bacillus cereus B4264] gi|296504360|ref|YP_003666060.1| sun protein [Bacillus thuringiensis BMB171] gi|206734082|gb|EDZ51253.1| ribosomal RNA small subunit methyltransferase B [Bacillus cereus AH1134] gi|218161820|gb|ACK61812.1| sun protein [Bacillus cereus B4264] gi|296325412|gb|ADH08340.1| sun protein [Bacillus thuringiensis BMB171] Length = 444 Score = 85.9 bits (212), Expect = 2e-15, Method: Composition-based stats. Identities = 29/141 (20%), Positives = 55/141 (39%), Gaps = 16/141 (11%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 R R A+ L Q++ G + ++ L +S D+ I++G Sbjct: 2 RQNVRELALDGLIQVEKSGAYSNLLL-----------NNLIEKSAIDRKDIGLLTEIVYG 50 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135 + R+ +D + L +K ++ + +LR + ++I VP I E V IA Sbjct: 51 TIQRRDTLDYYLQPFLKKK-----VEAWVRVLLRLSLYQMIYLDRVPERAAIHEAVEIAK 105 Query: 136 DFFYGDEPKFINAVLDKVSRK 156 + +N VL + R+ Sbjct: 106 RRGHKGIAGMVNGVLRSIQRE 126 >gi|326941634|gb|AEA17530.1| sun protein [Bacillus thuringiensis serovar chinensis CT-43] Length = 444 Score = 85.9 bits (212), Expect = 2e-15, Method: Composition-based stats. Identities = 29/141 (20%), Positives = 55/141 (39%), Gaps = 16/141 (11%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 R R A+ L Q++ G + ++ L +S D+ I++G Sbjct: 2 RQNVRELALDGLIQVEKSGAYSNLLL-----------NNLIEKSAIDRKDIGLLTEIVYG 50 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135 + R+ +D + L +K ++ + +LR + ++I VP I E V IA Sbjct: 51 TIQRRDTLDYYLQPFLKKK-----VEAWVRVLLRLSLYQMIYLDRVPERAAIHEAVEIAK 105 Query: 136 DFFYGDEPKFINAVLDKVSRK 156 + +N VL + R+ Sbjct: 106 RRGHKGIAGMVNGVLRSIQRE 126 >gi|42782957|ref|NP_980204.1| sun protein [Bacillus cereus ATCC 10987] gi|42738884|gb|AAS42812.1| sun protein [Bacillus cereus ATCC 10987] Length = 444 Score = 85.9 bits (212), Expect = 2e-15, Method: Composition-based stats. Identities = 29/141 (20%), Positives = 55/141 (39%), Gaps = 16/141 (11%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 R R A+ L Q++ G + ++ L +S D+ I++G Sbjct: 2 RQNVRELALDGLIQVEKSGAYSNLLL-----------NNLIEKSTIDRKDIGLLTEIVYG 50 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135 + R+ +D + L +K ++ + +LR + ++I VP I E V IA Sbjct: 51 TIQRRDTLDYYLQPFLKKK-----VEAWVRVLLRLSLYQMIYLDRVPERAAIHEAVEIAK 105 Query: 136 DFFYGDEPKFINAVLDKVSRK 156 + +N VL + R+ Sbjct: 106 RRGHKGIAGMVNGVLRSIQRE 126 >gi|196038686|ref|ZP_03105994.1| sun protein [Bacillus cereus NVH0597-99] gi|196030409|gb|EDX69008.1| sun protein [Bacillus cereus NVH0597-99] Length = 444 Score = 85.9 bits (212), Expect = 2e-15, Method: Composition-based stats. Identities = 29/141 (20%), Positives = 55/141 (39%), Gaps = 16/141 (11%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 R R A+ L Q++ G + ++ L +S D+ I++G Sbjct: 2 RQNVRELALDGLIQVEKSGAYSNLLL-----------NNLIEKSTIDRKDIGLLTEIVYG 50 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135 + R+ +D + L +K ++ + +LR + ++I VP I E V IA Sbjct: 51 TIQRRDTLDYYLQPFLKKK-----VEAWVRVLLRLSLYQMIYLDRVPERAAIHEAVEIAK 105 Query: 136 DFFYGDEPKFINAVLDKVSRK 156 + +N VL + R+ Sbjct: 106 RRGHKGIAGMVNGVLRSIQRE 126 >gi|218899018|ref|YP_002447429.1| sun protein [Bacillus cereus G9842] gi|218546015|gb|ACK98409.1| sun protein [Bacillus cereus G9842] Length = 444 Score = 85.9 bits (212), Expect = 2e-15, Method: Composition-based stats. Identities = 29/141 (20%), Positives = 55/141 (39%), Gaps = 16/141 (11%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 R R A+ L Q++ G + ++ L +S D+ I++G Sbjct: 2 RQNVRELALDGLIQVEKSGAYSNLLL-----------NNLIEKSAIDRKDIGLLTEIVYG 50 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135 + R+ +D + L +K ++ + +LR + ++I VP I E V IA Sbjct: 51 TIQRRDTLDYYLQPFLKKK-----VEAWVRVLLRLSLYQMIYLDRVPERAAIHEAVEIAK 105 Query: 136 DFFYGDEPKFINAVLDKVSRK 156 + +N VL + R+ Sbjct: 106 RRGHKGIAGMVNGVLRSIQRE 126 >gi|254735904|ref|ZP_05193610.1| ribosomal RNA small subunit methyltransferase B [Bacillus anthracis str. Western North America USA6153] Length = 444 Score = 85.9 bits (212), Expect = 2e-15, Method: Composition-based stats. Identities = 29/141 (20%), Positives = 55/141 (39%), Gaps = 16/141 (11%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 R R A+ L Q++ G + ++ L +S D+ I++G Sbjct: 2 RQNVRELALDGLIQVEKSGAYSNLLL-----------NNLIEKSTIDRKDIGLLTEIVYG 50 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135 + R+ +D + L +K ++ + +LR + ++I VP I E V IA Sbjct: 51 TIQRRDTLDYYLQPFLKKK-----VEAWVRVLLRLSLYQMIYLDRVPERAAIHEAVEIAK 105 Query: 136 DFFYGDEPKFINAVLDKVSRK 156 + +N VL + R+ Sbjct: 106 RRGHKGIAGMVNGVLRSIQRE 126 >gi|154505951|ref|ZP_02042689.1| hypothetical protein RUMGNA_03493 [Ruminococcus gnavus ATCC 29149] gi|153793969|gb|EDN76389.1| hypothetical protein RUMGNA_03493 [Ruminococcus gnavus ATCC 29149] Length = 448 Score = 85.9 bits (212), Expect = 2e-15, Method: Composition-based stats. Identities = 23/124 (18%), Positives = 50/124 (40%), Gaps = 6/124 (4%) Query: 37 TTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWS 96 E+ + + L+ + + + G ++ +D +++ K Sbjct: 15 LMEVTQQNVYSHLALNAVLEKYQYLEKKERAFITRVTEGTLEHMIELDYILNQF--SKVK 72 Query: 97 FSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA--HDFFYGDEPKFINAVLDKVS 154 +++ ++ +ILR+ V +L SVP + +E V +A F F+N VL V+ Sbjct: 73 VNKMKPVIRNILRSAVYQLKYMDSVPDSAVCNEAVKLAVKKGFGTLR--GFVNGVLRNVA 130 Query: 155 RKEE 158 R + Sbjct: 131 RGLD 134 >gi|30263868|ref|NP_846245.1| sun protein [Bacillus anthracis str. Ames] gi|47529294|ref|YP_020643.1| sun protein [Bacillus anthracis str. 'Ames Ancestor'] gi|49186715|ref|YP_029967.1| sun protein [Bacillus anthracis str. Sterne] gi|49478421|ref|YP_037926.1| sun protein [Bacillus thuringiensis serovar konkukian str. 97-27] gi|118479087|ref|YP_896238.1| sun protein [Bacillus thuringiensis str. Al Hakam] gi|165872297|ref|ZP_02216934.1| sun protein [Bacillus anthracis str. A0488] gi|167636414|ref|ZP_02394713.1| sun protein [Bacillus anthracis str. A0442] gi|167641141|ref|ZP_02399396.1| sun protein [Bacillus anthracis str. A0193] gi|170688847|ref|ZP_02880050.1| sun protein [Bacillus anthracis str. A0465] gi|170708813|ref|ZP_02899249.1| sun protein [Bacillus anthracis str. A0389] gi|177654922|ref|ZP_02936639.1| sun protein [Bacillus anthracis str. A0174] gi|190565749|ref|ZP_03018668.1| sun protein [Bacillus anthracis Tsiankovskii-I] gi|196035830|ref|ZP_03103232.1| sun protein [Bacillus cereus W] gi|196047441|ref|ZP_03114653.1| sun protein [Bacillus cereus 03BB108] gi|218904995|ref|YP_002452829.1| sun protein [Bacillus cereus AH820] gi|227813227|ref|YP_002813236.1| ribosomal RNA small subunit methyltransferase B [Bacillus anthracis str. CDC 684] gi|229603771|ref|YP_002868102.1| ribosomal RNA small subunit methyltransferase B [Bacillus anthracis str. A0248] gi|254683426|ref|ZP_05147286.1| ribosomal RNA small subunit methyltransferase B [Bacillus anthracis str. CNEVA-9066] gi|254721397|ref|ZP_05183186.1| ribosomal RNA small subunit methyltransferase B [Bacillus anthracis str. A1055] gi|254739848|ref|ZP_05197541.1| ribosomal RNA small subunit methyltransferase B [Bacillus anthracis str. Kruger B] gi|254751038|ref|ZP_05203077.1| ribosomal RNA small subunit methyltransferase B [Bacillus anthracis str. Vollum] gi|254756703|ref|ZP_05208732.1| ribosomal RNA small subunit methyltransferase B [Bacillus anthracis str. Australia 94] gi|301055356|ref|YP_003793567.1| sun protein [Bacillus anthracis CI] gi|30258512|gb|AAP27731.1| ribosomal RNA small subunit methyltransferase B [Bacillus anthracis str. Ames] gi|47504442|gb|AAT33118.1| sun protein [Bacillus anthracis str. 'Ames Ancestor'] gi|49180642|gb|AAT56018.1| sun protein [Bacillus anthracis str. Sterne] gi|49329977|gb|AAT60623.1| sun protein [Bacillus thuringiensis serovar konkukian str. 97-27] gi|118418312|gb|ABK86731.1| sun protein [Bacillus thuringiensis str. Al Hakam] gi|164711973|gb|EDR17513.1| sun protein [Bacillus anthracis str. A0488] gi|167510921|gb|EDR86312.1| sun protein [Bacillus anthracis str. A0193] gi|167528156|gb|EDR90943.1| sun protein [Bacillus anthracis str. A0442] gi|170126298|gb|EDS95189.1| sun protein [Bacillus anthracis str. A0389] gi|170667202|gb|EDT17962.1| sun protein [Bacillus anthracis str. A0465] gi|172080433|gb|EDT65520.1| sun protein [Bacillus anthracis str. A0174] gi|190562668|gb|EDV16634.1| sun protein [Bacillus anthracis Tsiankovskii-I] gi|195991479|gb|EDX55445.1| sun protein [Bacillus cereus W] gi|196021749|gb|EDX60444.1| sun protein [Bacillus cereus 03BB108] gi|218535394|gb|ACK87792.1| sun protein [Bacillus cereus AH820] gi|227005311|gb|ACP15054.1| ribosomal RNA small subunit methyltransferase B [Bacillus anthracis str. CDC 684] gi|229268179|gb|ACQ49816.1| ribosomal RNA small subunit methyltransferase B [Bacillus anthracis str. A0248] gi|300377525|gb|ADK06429.1| sun protein [Bacillus cereus biovar anthracis str. CI] Length = 444 Score = 85.9 bits (212), Expect = 2e-15, Method: Composition-based stats. Identities = 29/141 (20%), Positives = 55/141 (39%), Gaps = 16/141 (11%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 R R A+ L Q++ G + ++ L +S D+ I++G Sbjct: 2 RQNVRELALDGLIQVEKSGAYSNLLL-----------NNLIEKSTIDRKDIGLLTEIVYG 50 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135 + R+ +D + L +K ++ + +LR + ++I VP I E V IA Sbjct: 51 TIQRRDTLDYYLQPFLKKK-----VEAWVRVLLRLSLYQMIYLDRVPERAAIHEAVEIAK 105 Query: 136 DFFYGDEPKFINAVLDKVSRK 156 + +N VL + R+ Sbjct: 106 RRGHKGIAGMVNGVLRSIQRE 126 >gi|47569491|ref|ZP_00240171.1| sun protein [Bacillus cereus G9241] gi|47553820|gb|EAL12191.1| sun protein [Bacillus cereus G9241] Length = 444 Score = 85.9 bits (212), Expect = 2e-15, Method: Composition-based stats. Identities = 29/141 (20%), Positives = 55/141 (39%), Gaps = 16/141 (11%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 R R A+ L Q++ G + ++ L +S D+ I++G Sbjct: 2 RQNVRELALDGLIQVEKSGAYSNLLL-----------NNLIEKSTIDRKDIGLLTEIVYG 50 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135 + R+ +D + L +K ++ + +LR + ++I VP I E V IA Sbjct: 51 TIQRRDTLDYYLQPFLKKK-----VEAWVRVLLRLSLYQMIYLDRVPERAAIHEAVEIAK 105 Query: 136 DFFYGDEPKFINAVLDKVSRK 156 + +N VL + R+ Sbjct: 106 RRGHKGIAGMVNGVLRSIQRE 126 >gi|225865846|ref|YP_002751224.1| ribosomal RNA small subunit methyltransferase B [Bacillus cereus 03BB102] gi|225787241|gb|ACO27458.1| ribosomal RNA small subunit methyltransferase B [Bacillus cereus 03BB102] Length = 444 Score = 85.9 bits (212), Expect = 2e-15, Method: Composition-based stats. Identities = 29/141 (20%), Positives = 55/141 (39%), Gaps = 16/141 (11%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 R R A+ L Q++ G + ++ L +S D+ I++G Sbjct: 2 RQNVRELALDGLIQVEKSGAYSNLLL-----------NNLIEKSTIDRKDIGLLTEIVYG 50 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135 + R+ +D + L +K ++ + +LR + ++I VP I E V IA Sbjct: 51 TIQRRDTLDYYLQPFLKKK-----VEAWVRVLLRLSLYQMIYLDRVPERAAIHEAVEIAK 105 Query: 136 DFFYGDEPKFINAVLDKVSRK 156 + +N VL + R+ Sbjct: 106 RRGHKGIAGMVNGVLRSIQRE 126 >gi|65321192|ref|ZP_00394151.1| COG0144: tRNA and rRNA cytosine-C5-methylases [Bacillus anthracis str. A2012] Length = 444 Score = 85.9 bits (212), Expect = 2e-15, Method: Composition-based stats. Identities = 29/141 (20%), Positives = 55/141 (39%), Gaps = 16/141 (11%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 R R A+ L Q++ G + ++ L +S D+ I++G Sbjct: 2 RQNVRELALDGLIQVEKSGAYSNLLL-----------NNLIEKSTIDRKDIGLLTEIVYG 50 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135 + R+ +D + L +K ++ + +LR + ++I VP I E V IA Sbjct: 51 TIQRRDTLDYYLQPFLKKK-----VEAWVRVLLRLSLYQMIYLDRVPERAAIHEAVEIAK 105 Query: 136 DFFYGDEPKFINAVLDKVSRK 156 + +N VL + R+ Sbjct: 106 RRGHKGIAGMVNGVLRSIQRE 126 >gi|146297084|ref|YP_001180855.1| sun protein [Caldicellulosiruptor saccharolyticus DSM 8903] gi|145410660|gb|ABP67664.1| sun protein [Caldicellulosiruptor saccharolyticus DSM 8903] Length = 433 Score = 85.9 bits (212), Expect = 2e-15, Method: Composition-based stats. Identities = 28/149 (18%), Positives = 62/149 (41%), Gaps = 21/149 (14%) Query: 10 LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF 69 +K++ RR AA +++I+ + + E ++ D F Sbjct: 1 MKINTRR-----AAFLVIFEIESRKNVNADALMEKYHHKLKKTE-----------DRALF 44 Query: 70 RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISE 129 ++HGV+ K +D I+ + ++ +ILR EL+ +P ++E Sbjct: 45 VELVHGVLRYKNILDYYINFVAKKGVKDKKI----LNILRIATYELLFLDKIPDYATVNE 100 Query: 130 YVCIAHDFFYGDEPKFINAVLDKVSRKEE 158 +A + ++ F+NA+L + R+++ Sbjct: 101 ACELAKN-VNKNQKDFVNAILRNIIRRKD 128 >gi|325846649|ref|ZP_08169564.1| transcription antitermination factor NusB [Anaerococcus hydrogenalis ACS-025-V-Sch4] gi|325481407|gb|EGC84448.1| transcription antitermination factor NusB [Anaerococcus hydrogenalis ACS-025-V-Sch4] Length = 129 Score = 85.5 bits (211), Expect = 2e-15, Method: Composition-based stats. Identities = 32/142 (22%), Positives = 58/142 (40%), Gaps = 16/142 (11%) Query: 15 RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74 R R + +++ I +I + L D F+ + Sbjct: 2 NRAKQRDWVFKIIFENQIKN--IDDIDQAIINHDLD-----------LKRDSFLFQSL-K 47 Query: 75 GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134 +D ++I+ ++ + + S RL + +IL V E+ +PV V I+E V I+ Sbjct: 48 SYIDNFKNIEDILINQIGLS-SLKRLAKVDRAILFLSVNEMKY-LDIPVSVSINEAVNIS 105 Query: 135 HDFFYGDEPKFINAVLDKVSRK 156 + D KFIN+VL K++ K Sbjct: 106 KKYSTSDGYKFINSVLGKIAEK 127 >gi|307244450|ref|ZP_07526559.1| ribosomal RNA small subunit methyltransferase B [Peptostreptococcus stomatis DSM 17678] gi|306492143|gb|EFM64187.1| ribosomal RNA small subunit methyltransferase B [Peptostreptococcus stomatis DSM 17678] Length = 447 Score = 85.5 bits (211), Expect = 2e-15, Method: Composition-based stats. Identities = 31/152 (20%), Positives = 68/152 (44%), Gaps = 14/152 (9%) Query: 19 ARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMD 78 AR A + L+ I++ G + +++Y E+ D + +++G+++ Sbjct: 3 ARYLAYKILFDIEVNGNYSNMALNKYLN-----------EAGLDDQDKGFVTELVYGIIE 51 Query: 79 RKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFF 138 +K+++D +I+ K ++ + +LR GV +L+ V I+E V I Sbjct: 52 KKRYLDYMINK--VSKIKVRKMQHSVKLVLRMGVYQLVYMDGVTDYAAINESVNIMKKL- 108 Query: 139 YGDEPKFINAVLDKVSRKEEIKRSGCVSAITQ 170 F+NAVL +SR + + ++ + + Sbjct: 109 DKRSASFVNAVLRNISRNLDEVKDISLNTVDK 140 >gi|330814127|ref|YP_004358366.1| antitermination protein NusB [Candidatus Pelagibacter sp. IMCC9063] gi|327487222|gb|AEA81627.1| antitermination protein NusB [Candidatus Pelagibacter sp. IMCC9063] Length = 125 Score = 85.5 bits (211), Expect = 2e-15, Method: Composition-based stats. Identities = 26/90 (28%), Positives = 52/90 (57%) Query: 70 RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISE 129 + + +G +++ +D ++S L+ SF LDMIL IL+A + E++ +P +V++ E Sbjct: 36 KKVFNGFFEKEADLDQILSKNLSSNISFKNLDMILKIILKAAIFEVLYMPKIPFKVVVDE 95 Query: 130 YVCIAHDFFYGDEPKFINAVLDKVSRKEEI 159 Y+ + ++ + +NAVLD V + E + Sbjct: 96 YLAVTEMYYDSSQKGLVNAVLDSVFKSEHV 125 >gi|312797049|ref|YP_004029971.1| N utilization substance protein B [Burkholderia rhizoxinica HKI 454] gi|312168824|emb|CBW75827.1| N utilization substance protein B [Burkholderia rhizoxinica HKI 454] Length = 60 Score = 85.5 bits (211), Expect = 2e-15, Method: Composition-based stats. Identities = 20/59 (33%), Positives = 30/59 (50%), Gaps = 3/59 (5%) Query: 108 LRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVS---RKEEIKRSG 163 L E +P V+I+E V +A F D K++N VLDK++ R +E+K G Sbjct: 2 LLIAAYEFQHHFEIPYRVVINEAVELAKTFGGADGYKYVNGVLDKLAVTMRADEVKARG 60 >gi|302874750|ref|YP_003843383.1| sun protein [Clostridium cellulovorans 743B] gi|307690635|ref|ZP_07633081.1| sun protein [Clostridium cellulovorans 743B] gi|302577607|gb|ADL51619.1| sun protein [Clostridium cellulovorans 743B] Length = 443 Score = 85.5 bits (211), Expect = 2e-15, Method: Composition-based stats. Identities = 31/137 (22%), Positives = 57/137 (41%), Gaps = 13/137 (9%) Query: 20 RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79 R AV L ++ +E + EL+ +S ++D I++G + Sbjct: 5 RETAVIIL----------NKVFNERGYSNIIINKELN-KSNLENIDKALVTEIVYGTIQY 53 Query: 80 KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139 K ID +I + S +D + +ILR+ + ++ +P +++E V ++ Sbjct: 54 KYTIDKIIDHFVGRG--TSSVDKKVVNILRSAIYQIRYLDKIPSFAVVNEAVELSKKLST 111 Query: 140 GDEPKFINAVLDKVSRK 156 KFIN VL RK Sbjct: 112 VTSSKFINGVLRNYIRK 128 >gi|304373104|ref|YP_003856313.1| Transcription termination factor [Mycoplasma hyorhinis HUB-1] gi|304309295|gb|ADM21775.1| Transcription termination factor [Mycoplasma hyorhinis HUB-1] gi|330723272|gb|AEC45642.1| Transcription termination factor [Mycoplasma hyorhinis MCLD] Length = 152 Score = 85.5 bits (211), Expect = 2e-15, Method: Composition-based stats. Identities = 42/172 (24%), Positives = 74/172 (43%), Gaps = 24/172 (13%) Query: 1 MTIQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESV 60 MT +NKK +R I R+ + LY ++ T + +L E + Sbjct: 1 MTQTENKK--YPFSKRRIHRMEIISLLYSYELFDNKIN-------TNEIFKNYDLTKEQI 51 Query: 61 YLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHS 120 I+ + + + LI + L WS++R+ ++ +IL G EL+ + Sbjct: 52 ----------KILEAIEKKYEIFQKLIINFLGSNWSWNRILPLVRAILLLGSFELLVNDN 101 Query: 121 VPVEVIISEYVCIAHDFF--YGDEPKFINAVLDKVSRKEEIKRSGCVSAITQ 170 +V+I+E V + D+ E KF+NAVLDK+++ E + TQ Sbjct: 102 ---KVVINEMVQMIKDYTLESDKEYKFVNAVLDKINQFYEQENLKVYKKTTQ 150 >gi|153853041|ref|ZP_01994450.1| hypothetical protein DORLON_00435 [Dorea longicatena DSM 13814] gi|149753827|gb|EDM63758.1| hypothetical protein DORLON_00435 [Dorea longicatena DSM 13814] Length = 51 Score = 85.5 bits (211), Expect = 2e-15, Method: Composition-based stats. Identities = 18/50 (36%), Positives = 26/50 (52%) Query: 105 CSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVS 154 +ILR V E+ VP V I+E V +A + D F+N VL K++ Sbjct: 1 LTILRLAVYEMKWDEDVPTGVAINEAVNLAKKYSSEDGASFVNGVLAKLA 50 >gi|33862283|ref|NP_893843.1| transcription antitermination protein NusB [Prochlorococcus marinus str. MIT 9313] gi|33640396|emb|CAE20185.1| Antitermination protein NusB [Prochlorococcus marinus str. MIT 9313] Length = 222 Score = 85.5 bits (211), Expect = 2e-15, Method: Composition-based stats. Identities = 25/81 (30%), Positives = 39/81 (48%), Gaps = 2/81 (2%) Query: 73 IHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVC 132 + V++++ ID I + E W SRL I ILR V++L P V +E V Sbjct: 135 VRLVIEQRNSIDASID-AVMEGWRLSRLPRIDRDILRLAVVDLTALQ-TPFAVACNEAVE 192 Query: 133 IAHDFFYGDEPKFINAVLDKV 153 +AH + + IN VL ++ Sbjct: 193 LAHRYSDDQGRRMINGVLRRL 213 >gi|323342016|ref|ZP_08082249.1| hypothetical protein HMPREF0357_10429 [Erysipelothrix rhusiopathiae ATCC 19414] gi|322464441|gb|EFY09634.1| hypothetical protein HMPREF0357_10429 [Erysipelothrix rhusiopathiae ATCC 19414] Length = 134 Score = 85.2 bits (210), Expect = 3e-15, Method: Composition-based stats. Identities = 39/140 (27%), Positives = 60/140 (42%), Gaps = 12/140 (8%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 R R A+ A+Y + S E++ E RF ++ ++ L ++ ++ Sbjct: 5 RYNERQNAMSAIYIHLLREQSMQEVL---EDNRFVSEVGTFIQDFNLQDEM---LQVVMN 58 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELI--ECHSVPVEVIISEYVCI 133 V RK I LT+ W F RL I +IL EL V VI++E V + Sbjct: 59 VEARKDIYSRAIDHYLTK-WRFDRLGFIEQAILLMACAELELGYQDKV---VIVNEAVNL 114 Query: 134 AHDFFYGDEPKFINAVLDKV 153 A DF + K IN V+D + Sbjct: 115 AKDFSDEESYKLINGVIDAL 134 >gi|227499439|ref|ZP_03929550.1| possible transcription antitermination protein NusB [Anaerococcus tetradius ATCC 35098] gi|227218501|gb|EEI83744.1| possible transcription antitermination protein NusB [Anaerococcus tetradius ATCC 35098] Length = 133 Score = 85.2 bits (210), Expect = 3e-15, Method: Composition-based stats. Identities = 33/149 (22%), Positives = 62/149 (41%), Gaps = 21/149 (14%) Query: 15 RRGIARLAAVQALYQIDIIG-CSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVII 73 R R + +YQ I +I++E D ++ + I Sbjct: 2 NRVEQREWVFKLIYQDMISKIEDVDKILAELNL-----------------ADEDFIKASI 44 Query: 74 HGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCI 133 +D+ I+ + S L K R+ +L SIL + E+ +PV V I+E V + Sbjct: 45 SSYLDKLTLIEEKVDSNLDSKHK--RIAKVLRSILYLSINEI-YFMDIPVSVSINEAVNL 101 Query: 134 AHDFFYGDEPKFINAVLDKVSRKEEIKRS 162 A + ++ K +N++L + RK+ ++S Sbjct: 102 AKKYSDEEDYKLVNSILGSIVRKDGNEKS 130 >gi|113954607|ref|YP_729249.1| transcription antitermination protein NusB [Synechococcus sp. CC9311] gi|113881958|gb|ABI46916.1| putative transcription antitermination factor NusB [Synechococcus sp. CC9311] Length = 210 Score = 85.2 bits (210), Expect = 3e-15, Method: Composition-based stats. Identities = 26/81 (32%), Positives = 41/81 (50%), Gaps = 2/81 (2%) Query: 73 IHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVC 132 + V+ +++ ID ++ + E W +RL I ILR V++L E P V +E V Sbjct: 123 VTFVLKKRKAIDQMLDGVM-EGWRLTRLPRIDRDILRLAVIDLSELK-TPAAVACNEAVE 180 Query: 133 IAHDFFYGDEPKFINAVLDKV 153 +AH F K IN VL ++ Sbjct: 181 LAHRFSDEQGRKMINGVLRRL 201 >gi|302386503|ref|YP_003822325.1| sun protein [Clostridium saccharolyticum WM1] gi|302197131|gb|ADL04702.1| sun protein [Clostridium saccharolyticum WM1] Length = 446 Score = 85.2 bits (210), Expect = 3e-15, Method: Composition-based stats. Identities = 28/149 (18%), Positives = 58/149 (38%), Gaps = 16/149 (10%) Query: 12 LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71 + + +R ++ L +I G + I+ + L+ + + Sbjct: 1 MMTKETDSREIVLEILLEILERGGYSHIILRQ----------ALNKYQYLEKSERAFITR 50 Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131 + G ++ +D +I S ++ ++ +ILR V +L+ VP + +E V Sbjct: 51 TVEGTVEYLLQMDYIIDSF--SNIKVRKMKPVIRTILRMSVYQLLYMDRVPDSAVCNEAV 108 Query: 132 CIA--HDFFYGDEPKFINAVLDKVSRKEE 158 +A F F+N VL +SR +E Sbjct: 109 KLAVKRKFTGLK--GFVNGVLRNISRNKE 135 >gi|302389593|ref|YP_003825414.1| sun protein [Thermosediminibacter oceani DSM 16646] gi|302200221|gb|ADL07791.1| sun protein [Thermosediminibacter oceani DSM 16646] Length = 450 Score = 85.2 bits (210), Expect = 3e-15, Method: Composition-based stats. Identities = 26/139 (18%), Positives = 59/139 (42%), Gaps = 16/139 (11%) Query: 20 RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79 R AV+ L +++ G + ++ + T + D +++GV+ Sbjct: 9 RELAVRILTEVE-RGSYSNLSLNRHLTAEISRE------------DRALITELVYGVIKH 55 Query: 80 KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139 + +D ++S + ++ I+ + LR G+ +++ +P ++E V IA + Sbjct: 56 RIRLDYVLSKFSKIG--LNDINPIILNCLRVGLYQILFLDKIPDYAAVNESVNIAKLYS- 112 Query: 140 GDEPKFINAVLDKVSRKEE 158 F+N VL V R ++ Sbjct: 113 KKAAGFVNGVLRNVIRSKD 131 >gi|20807946|ref|NP_623117.1| tRNA and rRNA cytosine-C5-methylase [Thermoanaerobacter tengcongensis MB4] gi|254479565|ref|ZP_05092880.1| ribosomal RNA small subunit methyltransferase B [Carboxydibrachium pacificum DSM 12653] gi|20516516|gb|AAM24721.1| tRNA and rRNA cytosine-C5-methylases [Thermoanaerobacter tengcongensis MB4] gi|214034503|gb|EEB75262.1| ribosomal RNA small subunit methyltransferase B [Carboxydibrachium pacificum DSM 12653] Length = 443 Score = 85.2 bits (210), Expect = 3e-15, Method: Composition-based stats. Identities = 36/140 (25%), Positives = 60/140 (42%), Gaps = 16/140 (11%) Query: 19 ARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMD 78 AR A + LY D++ + Y F D VD + + +++GV++ Sbjct: 3 ARELAYRILY--DVV------VKKAYINISFAKHLRNDE---VKEVDAAFVKELVYGVIE 51 Query: 79 RKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFF 138 RK +D ++S + + L +L G+ +L+ VP I+E V IA F Sbjct: 52 RKYTLDFILSFFIKKSADTKAL-----LLLEMGLYQLLYMDKVPDYAAINETVEIAKKFL 106 Query: 139 YGDEPKFINAVLDKVSRKEE 158 F+NAVL R++E Sbjct: 107 SKKGASFLNAVLRSYLREKE 126 >gi|154494846|ref|ZP_02033851.1| hypothetical protein PARMER_03890 [Parabacteroides merdae ATCC 43184] gi|154085396|gb|EDN84441.1| hypothetical protein PARMER_03890 [Parabacteroides merdae ATCC 43184] Length = 308 Score = 85.2 bits (210), Expect = 3e-15, Method: Composition-based stats. Identities = 17/90 (18%), Positives = 39/90 (43%), Gaps = 1/90 (1%) Query: 65 DLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVE 124 D + + + + I+ + + W R+ + I++ + E++ ++P+ Sbjct: 208 DQSFAIKLFRQSLMKGSEFRERINKHM-KNWETERIANMDLIIMQVALAEIMTFPTIPIN 266 Query: 125 VIISEYVCIAHDFFYGDEPKFINAVLDKVS 154 V ++EY+ A + FIN +LD V Sbjct: 267 VTLNEYIDTAKYYSTPKSGTFINGILDSVV 296 >gi|158522242|ref|YP_001530112.1| sun protein [Desulfococcus oleovorans Hxd3] gi|158511068|gb|ABW68035.1| sun protein [Desulfococcus oleovorans Hxd3] Length = 468 Score = 84.8 bits (209), Expect = 3e-15, Method: Composition-based stats. Identities = 26/146 (17%), Positives = 56/146 (38%), Gaps = 14/146 (9%) Query: 5 DNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHV 64 DN++ + R+ R A++ L ++ + ++ E + Sbjct: 9 DNRRP--TAARKSDPRAVALRILTALEKGHRTLDQVADEALARVSFPE----------KR 56 Query: 65 DLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVE 124 D +++GV+ + +D I + R+D + +ILR G+ +L +P Sbjct: 57 DRALVTTLVYGVLRWRNTLDYTIV-HFSRT-PLQRMDPAVLNILRLGLFQLRFLDRIPDF 114 Query: 125 VIISEYVCIAHDFFYGDEPKFINAVL 150 I+ V ++ G F+N +L Sbjct: 115 AAINSSVDLSKQAGLGRLSGFVNGLL 140 >gi|218262680|ref|ZP_03477038.1| hypothetical protein PRABACTJOHN_02717 [Parabacteroides johnsonii DSM 18315] gi|218223231|gb|EEC95881.1| hypothetical protein PRABACTJOHN_02717 [Parabacteroides johnsonii DSM 18315] Length = 308 Score = 84.8 bits (209), Expect = 3e-15, Method: Composition-based stats. Identities = 17/90 (18%), Positives = 39/90 (43%), Gaps = 1/90 (1%) Query: 65 DLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVE 124 D + + + + I+ + + W R+ + I++ + E++ ++P+ Sbjct: 208 DQSFAIKLFRQSLMKGSEFRERINKHM-KNWETERIANMDLIIMQVALAEIMTFPTIPIN 266 Query: 125 VIISEYVCIAHDFFYGDEPKFINAVLDKVS 154 V ++EY+ A + FIN +LD V Sbjct: 267 VTLNEYIDTAKYYSTPKSGTFINGILDSVV 296 >gi|150016032|ref|YP_001308286.1| sun protein [Clostridium beijerinckii NCIMB 8052] gi|149902497|gb|ABR33330.1| sun protein [Clostridium beijerinckii NCIMB 8052] Length = 439 Score = 84.8 bits (209), Expect = 3e-15, Method: Composition-based stats. Identities = 28/139 (20%), Positives = 58/139 (41%), Gaps = 15/139 (10%) Query: 20 RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79 R AV+ L +++E EL+ E+ D I++GV+ R Sbjct: 4 RKLAVKIL----------GRVLNEGAYSNIVLAKELN-EAELSDKDKALLTEIVYGVLRR 52 Query: 80 KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139 K+ +D++IS+ + ++ + +ILR + ++ +P +E V A + Sbjct: 53 KKTLDIIISNFVK---DLKLMNKDILNILRVAIYQMNFLDKIPSYAACNEAVEEAKEISE 109 Query: 140 GDEPKFINAVLDKVSRKEE 158 D K +N +L ++ + Sbjct: 110 NDS-KLVNGILRNFTKNPD 127 >gi|317472520|ref|ZP_07931840.1| ribosomal RNA small subunit methyltransferase B [Anaerostipes sp. 3_2_56FAA] gi|316899997|gb|EFV21991.1| ribosomal RNA small subunit methyltransferase B [Anaerostipes sp. 3_2_56FAA] Length = 448 Score = 84.8 bits (209), Expect = 4e-15, Method: Composition-based stats. Identities = 31/140 (22%), Positives = 59/140 (42%), Gaps = 14/140 (10%) Query: 20 RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79 R A+ L +ID E ++ +T L+ D +F + G ++R Sbjct: 5 RELALDVLMKID---------KKEELSHIAIGET-LEKYQFSEKKDRAFFTRLCQGTLER 54 Query: 80 KQHIDLLISSCLTEKWSFSR-LDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFF 138 + ID +I K R + ++ S+LR G +++ +P +E V +A Sbjct: 55 RLTIDYVIDLYSKTK---ERKMKPLVRSLLRMGACQILFMDHIPDSAACNECVKLAKKRG 111 Query: 139 YGDEPKFINAVLDKVSRKEE 158 + F+N VL +SR+++ Sbjct: 112 FSKLSGFVNGVLRTISRQKQ 131 >gi|154485073|ref|ZP_02027521.1| hypothetical protein EUBVEN_02796 [Eubacterium ventriosum ATCC 27560] gi|149734026|gb|EDM50145.1| hypothetical protein EUBVEN_02796 [Eubacterium ventriosum ATCC 27560] Length = 448 Score = 84.8 bits (209), Expect = 4e-15, Method: Composition-based stats. Identities = 25/104 (24%), Positives = 48/104 (46%), Gaps = 2/104 (1%) Query: 55 LDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLE 114 LD + + G ++R+ ID +I+ K +++ ++ ILR GV + Sbjct: 37 LDKNVSLDKHQRSFITRLFQGTLERRIEIDFIINQF--SKTPVNKMKPVIREILRMGVYQ 94 Query: 115 LIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEE 158 + +VPV + +E V +A + + F+N VL ++R E Sbjct: 95 IKYMDNVPVSAVCNEGVKLAEKRKFRNLKGFVNGVLRNIARNIE 138 >gi|310828894|ref|YP_003961251.1| hypothetical protein ELI_3326 [Eubacterium limosum KIST612] gi|308740628|gb|ADO38288.1| hypothetical protein ELI_3326 [Eubacterium limosum KIST612] Length = 441 Score = 84.8 bits (209), Expect = 4e-15, Method: Composition-based stats. Identities = 30/143 (20%), Positives = 57/143 (39%), Gaps = 14/143 (9%) Query: 20 RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79 R AV+ L + E Y ++ E+ Y D + I++G + Sbjct: 4 REQAVKTL----------LRVSRE-GAYSNLETKKVLGENHYKEEDRGLYLNIVYGTLQN 52 Query: 80 KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139 K ++D L+ +++ ++LD + ILR V ++ +P ++E V I Sbjct: 53 KLYLDYLLKKHISK--DLNKLDPEVLEILRIAVYQIYFLDKIPSYAAVNESVEITGRI-K 109 Query: 140 GDEPKFINAVLDKVSRKEEIKRS 162 F+N VL + R +E + Sbjct: 110 PKARGFVNGVLRNILRSKETDEA 132 >gi|310642738|ref|YP_003947496.1| ribosomal RNA small subunit methyltransferase b [Paenibacillus polymyxa SC2] gi|309247688|gb|ADO57255.1| Ribosomal RNA small subunit methyltransferase B [Paenibacillus polymyxa SC2] Length = 471 Score = 84.4 bits (208), Expect = 4e-15, Method: Composition-based stats. Identities = 31/147 (21%), Positives = 60/147 (40%), Gaps = 13/147 (8%) Query: 15 RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74 R+ AR A+ L G S +E R ++ D+ +++ Sbjct: 23 RKQTAREVALDVL-----TGVEQEGAYSNFELNRRLQ------QAGLSASDVGLTTELVY 71 Query: 75 GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134 G + R+ +D ++ + + ++L + S+LR V +L+ VP ++SE V IA Sbjct: 72 GTVARRNTLDYFLNKFVQKG--TAKLQPWVRSLLRMSVYQLVYLDRVPDHAVVSEAVTIA 129 Query: 135 HDFFYGDEPKFINAVLDKVSRKEEIKR 161 + +N VL + R+ + R Sbjct: 130 KRRGHQGISGMVNGVLRSMLREPDKLR 156 >gi|313157987|gb|EFR57393.1| conserved hypothetical protein [Alistipes sp. HGB5] Length = 311 Score = 84.4 bits (208), Expect = 5e-15, Method: Composition-based stats. Identities = 28/129 (21%), Positives = 47/129 (36%), Gaps = 5/129 (3%) Query: 40 IISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSR 99 I+ R D ++ R + + I T W R Sbjct: 181 ILRSLSNLRPTHTELKVPAKFKSDEDPQFVRTLFEKSLVNYDSYQDYIEKF-TSNWDVER 239 Query: 100 LDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVS----R 155 + + I+ + EL S+PV+V + EY+ I+ + FIN VLDK+ Sbjct: 240 IVFMDNLIIGTAMAELTSFPSIPVKVTLDEYIEISKYYSTPGSSTFINGVLDKIVDSLTA 299 Query: 156 KEEIKRSGC 164 + IK++G Sbjct: 300 EGRIKKAGR 308 >gi|331086043|ref|ZP_08335126.1| ribosomal RNA small subunit methyltransferase B [Lachnospiraceae bacterium 9_1_43BFAA] gi|330406966|gb|EGG86471.1| ribosomal RNA small subunit methyltransferase B [Lachnospiraceae bacterium 9_1_43BFAA] Length = 452 Score = 84.4 bits (208), Expect = 5e-15, Method: Composition-based stats. Identities = 21/104 (20%), Positives = 46/104 (44%), Gaps = 2/104 (1%) Query: 55 LDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLE 114 L+ + + ++ G ++R ID +I+ +++ ++ +ILR+ V + Sbjct: 33 LEKYQYLDKKERAFITRVVEGTLERMIEIDYIINQF--SNVKVNKMKPVIRTILRSAVYQ 90 Query: 115 LIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEE 158 L VP + +E V +A + F+N VL ++R + Sbjct: 91 LKYMDGVPDSAVCNEAVKLAEKKGFRSLKGFVNGVLRTIARNMD 134 >gi|260887300|ref|ZP_05898563.1| ribosomal RNA small subunit methyltransferase B [Selenomonas sputigena ATCC 35185] gi|330838946|ref|YP_004413526.1| sun protein [Selenomonas sputigena ATCC 35185] gi|260862936|gb|EEX77436.1| ribosomal RNA small subunit methyltransferase B [Selenomonas sputigena ATCC 35185] gi|329746710|gb|AEC00067.1| sun protein [Selenomonas sputigena ATCC 35185] Length = 443 Score = 84.4 bits (208), Expect = 5e-15, Method: Composition-based stats. Identities = 28/141 (19%), Positives = 55/141 (39%), Gaps = 13/141 (9%) Query: 18 IARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVM 77 AR A++AL++++ G ++ + VD + + +G Sbjct: 3 KARETALKALHEVNEKGAYANVALARSLR-----------AAKLSEVDRRFATELAYGAA 51 Query: 78 DRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDF 137 +D ++ L S++ ++ ILR G+ +L VP + V + Sbjct: 52 KAGGTLDWILRRYLNR--PLSKIPPMVRDILRLGIYQLFFLARVPASAACNTAVEMTKRC 109 Query: 138 FYGDEPKFINAVLDKVSRKEE 158 + KF+NAVL +R+ E Sbjct: 110 SHAGTVKFVNAVLRTAAREPE 130 >gi|88608227|ref|YP_506746.1| putative N utilization substance protein B [Neorickettsia sennetsu str. Miyayama] gi|88600396|gb|ABD45864.1| putative N utilization substance protein B [Neorickettsia sennetsu str. Miyayama] Length = 141 Score = 84.4 bits (208), Expect = 6e-15, Method: Composition-based stats. Identities = 37/149 (24%), Positives = 66/149 (44%), Gaps = 8/149 (5%) Query: 12 LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71 + + +ARL +++ Y +E+IS EL DLE Sbjct: 1 MPSEKRVARLLSIEVCYSSYFSDLPQSELIS--------RALELQEMPYMKRYDLELLNS 52 Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131 I+ + + LI L+E+W +R+D + S+LR + EL ++I+EYV Sbjct: 53 ILDLCLANVEADTELIGRFLSEEWEINRIDNLKLSLLRVAISELRLSSVGQRNLVINEYV 112 Query: 132 CIAHDFFYGDEPKFINAVLDKVSRKEEIK 160 + F E F+NA+L+K++ + + K Sbjct: 113 SLGGLFLSVKEVGFVNAILEKLASEIQGK 141 >gi|124021724|ref|YP_001016031.1| transcription antitermination protein NusB [Prochlorococcus marinus str. MIT 9303] gi|123962010|gb|ABM76766.1| Antitermination protein NusB [Prochlorococcus marinus str. MIT 9303] Length = 211 Score = 84.0 bits (207), Expect = 6e-15, Method: Composition-based stats. Identities = 25/81 (30%), Positives = 39/81 (48%), Gaps = 2/81 (2%) Query: 73 IHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVC 132 + V++++ ID I + E W SRL I ILR V++L P V +E V Sbjct: 124 VRLVIEKRNSIDASID-AVMEGWRLSRLPRIDRDILRLAVVDLT-ALQTPSAVACNEAVE 181 Query: 133 IAHDFFYGDEPKFINAVLDKV 153 +AH + + IN VL ++ Sbjct: 182 LAHRYSDDQGRRMINGVLRRL 202 >gi|284047695|ref|YP_003398034.1| sun protein [Acidaminococcus fermentans DSM 20731] gi|283951916|gb|ADB46719.1| sun protein [Acidaminococcus fermentans DSM 20731] Length = 446 Score = 84.0 bits (207), Expect = 6e-15, Method: Composition-based stats. Identities = 27/149 (18%), Positives = 59/149 (39%), Gaps = 15/149 (10%) Query: 10 LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF 69 +K + + R AA+ L QI + G + + + +D + Sbjct: 1 MKGTAK--NPREAALLILEQIFLRGAYANLALDQGLR-----------GATLSPLDRKLT 47 Query: 70 RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISE 129 +++G + +D +S + +LD ++ ILR G +L+ +P +E Sbjct: 48 TELVYGTVKTMGTLDWYLSRVVNR--PLRKLDPLVLVILRLGAYQLLYLDRIPASAACNE 105 Query: 130 YVCIAHDFFYGDEPKFINAVLDKVSRKEE 158 V +A + + K +N L +++R + Sbjct: 106 SVKLAKKWVHEGAGKLVNGALRQLARTRD 134 >gi|218778410|ref|YP_002429728.1| sun protein [Desulfatibacillum alkenivorans AK-01] gi|218759794|gb|ACL02260.1| sun protein [Desulfatibacillum alkenivorans AK-01] Length = 455 Score = 84.0 bits (207), Expect = 6e-15, Method: Composition-based stats. Identities = 35/147 (23%), Positives = 63/147 (42%), Gaps = 12/147 (8%) Query: 10 LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF 69 +K + +R+ A + L +++ G +++ D LD E D Sbjct: 1 MKPPAGKDKSRITAARILDRLE-SGDQVLDVV---------LDRALDKEPGLTRKDRALV 50 Query: 70 RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISE 129 +++GV+ + ID +ISS K ++ + +ILR GV +L+ VP + + Sbjct: 51 MALVYGVLRNRGRIDWIISSFSKTK--LKKIQPEILNILRMGVFQLLFLDRVPPALAVDS 108 Query: 130 YVCIAHDFFYGDEPKFINAVLDKVSRK 156 V +A KF+N +L V RK Sbjct: 109 SVEMAKKAAPVFVSKFVNGLLRNVERK 135 >gi|78186474|ref|YP_374517.1| Fmu, rRNA SAM-dependent methyltransferase [Chlorobium luteolum DSM 273] gi|78166376|gb|ABB23474.1| Fmu, rRNA SAM-dependent methyltransferase [Chlorobium luteolum DSM 273] Length = 442 Score = 84.0 bits (207), Expect = 7e-15, Method: Composition-based stats. Identities = 30/140 (21%), Positives = 54/140 (38%), Gaps = 13/140 (9%) Query: 17 GIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGV 76 AR A L Q++ + ++ E S D + GV Sbjct: 2 TSARELAFNILQQLEAGTRHSDSLLHELLE-----------ASSLKGPDRALATALTSGV 50 Query: 77 MDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHD 136 + ++ +D +I+ + + + +ILR GV +L+ VP ++E V +A Sbjct: 51 LRQRLQLDFIIAKFYSH--DIQKASPAVLNILRLGVWQLLFLDRVPRWAAVNECVRLARR 108 Query: 137 FFYGDEPKFINAVLDKVSRK 156 + K NAVL K+S + Sbjct: 109 YKGERMSKLTNAVLRKISPE 128 >gi|162447338|ref|YP_001620470.1| transcription antitermination factor [Acholeplasma laidlawii PG-8A] gi|161985445|gb|ABX81094.1| transcription antitermination factor [Acholeplasma laidlawii PG-8A] Length = 126 Score = 84.0 bits (207), Expect = 7e-15, Method: Composition-based stats. Identities = 24/90 (26%), Positives = 56/90 (62%), Gaps = 5/90 (5%) Query: 70 RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISE 129 + +I+G++D +H+D LISS + + ++ RL+++ +I+R V L++ P E++I+E Sbjct: 37 KEVINGMIDELEHVDFLISSTI-KNYTIDRLNLVDLAIIRVAVYALLKEID-PAEIVINE 94 Query: 130 YVCIAHDFF---YGDEPKFINAVLDKVSRK 156 + ++ ++ + KF N+++D + +K Sbjct: 95 AIELSKEYTDLDDEKQHKFNNSLIDNIYKK 124 >gi|325662242|ref|ZP_08150857.1| ribosomal RNA small subunit methyltransferase B [Lachnospiraceae bacterium 4_1_37FAA] gi|325471494|gb|EGC74715.1| ribosomal RNA small subunit methyltransferase B [Lachnospiraceae bacterium 4_1_37FAA] Length = 452 Score = 84.0 bits (207), Expect = 7e-15, Method: Composition-based stats. Identities = 21/104 (20%), Positives = 46/104 (44%), Gaps = 2/104 (1%) Query: 55 LDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLE 114 L+ + + ++ G ++R ID +I+ +++ ++ +ILR+ V + Sbjct: 33 LEKYQYLDKKERAFITRVVEGTLERMIEIDYIINQF--SNVKVNKMKPVIRTILRSAVYQ 90 Query: 115 LIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEE 158 L VP + +E V +A + F+N VL ++R + Sbjct: 91 LKYMDGVPDSAVCNEAVKLAEKKGFRSLKGFVNGVLRTIARNMD 134 >gi|163790822|ref|ZP_02185247.1| Sun protein [Carnobacterium sp. AT7] gi|159873890|gb|EDP67969.1| Sun protein [Carnobacterium sp. AT7] Length = 458 Score = 84.0 bits (207), Expect = 7e-15, Method: Composition-based stats. Identities = 36/155 (23%), Positives = 66/155 (42%), Gaps = 19/155 (12%) Query: 2 TIQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVY 61 + K+++K + +R A+ L E + +Y E ++ Sbjct: 4 NQEPQKRNVKKT-----SRYLAMSIL-----------ERTDKTGSYSNLLINEAIQKNKL 47 Query: 62 LHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSV 121 D +++GV+ RK +D +SS L E ++D+ + ++LR + ++I + Sbjct: 48 SAADARLLTELVYGVLQRKLTLDFYLSSFLAED---KKIDIWVRNLLRLSIYQMIYLDKI 104 Query: 122 PVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRK 156 PV I+ E V +A + KFIN VL RK Sbjct: 105 PVHAILFEAVEVAKKKGHIGISKFINGVLRNADRK 139 >gi|229918581|ref|YP_002887227.1| sun protein [Exiguobacterium sp. AT1b] gi|229470010|gb|ACQ71782.1| sun protein [Exiguobacterium sp. AT1b] Length = 443 Score = 83.6 bits (206), Expect = 7e-15, Method: Composition-based stats. Identities = 33/138 (23%), Positives = 56/138 (40%), Gaps = 15/138 (10%) Query: 20 RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79 R AA+ L +I+ G Y A + + D+ + +++G + R Sbjct: 4 REAALDTLMKIEQGG-----------AYSTIAVNDTLKQKKVAPKDVGLYTELVYGTLSR 52 Query: 80 KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139 K +D ++ S +LD + +LR V +L VP ++ E V IA + Sbjct: 53 KGTLDYILK---DRIRSPKKLDKFVLPLLRMSVYQLFYLDKVPDRAVLHEAVEIAKKRGH 109 Query: 140 GDE-PKFINAVLDKVSRK 156 KF+N VL V R+ Sbjct: 110 HLGTSKFVNGVLRNVLRE 127 >gi|15895002|ref|NP_348351.1| rRNA methylase [Clostridium acetobutylicum ATCC 824] gi|15024692|gb|AAK79691.1|AE007682_1 Predicted rRNA methylase, SUN family [Clostridium acetobutylicum ATCC 824] gi|325509139|gb|ADZ20775.1| rRNA methylase, SUN family [Clostridium acetobutylicum EA 2018] Length = 441 Score = 83.6 bits (206), Expect = 8e-15, Method: Composition-based stats. Identities = 24/95 (25%), Positives = 44/95 (46%), Gaps = 2/95 (2%) Query: 65 DLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVE 124 D I++G + K ID++IS + K +++D + ++LR + ++ +P Sbjct: 39 DKGLVTEIVYGTIKYKYSIDIIISKFVKTK--INKIDKRVLNVLRMSIYQIRYLDKIPDF 96 Query: 125 VIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEI 159 ++E V I + KF+NAVL R I Sbjct: 97 AAVNEAVNITKKYISLKSSKFVNAVLRNYLRNPNI 131 >gi|257126675|ref|YP_003164789.1| NusB antitermination factor [Leptotrichia buccalis C-1013-b] gi|257050614|gb|ACV39798.1| NusB antitermination factor [Leptotrichia buccalis C-1013-b] Length = 138 Score = 83.6 bits (206), Expect = 8e-15, Method: Composition-based stats. Identities = 26/146 (17%), Positives = 70/146 (47%), Gaps = 12/146 (8%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 R R + L++ ++I + + I++ ++ E++ + ++++ R + Sbjct: 3 RREIREEIFKLLFEHELIDNNIEKRINDV----------INEENLKKNDEIDFLRSYVTE 52 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135 +++ + + I + L W++ RL I +L+ E+ ++ E+ I+E + IA Sbjct: 53 IIENENILIEKIKNILD-GWTYERLGTIEKVLLKISFYEIT-IKNIGYEIAINEVLEIAK 110 Query: 136 DFFYGDEPKFINAVLDKVSRKEEIKR 161 + Y D +F+N +L K+ + + ++ Sbjct: 111 KYSYNDTKEFLNGILAKLVKDIKEEQ 136 >gi|182420429|ref|ZP_02951648.1| ribosomal RNA small subunit methyltransferase B [Clostridium butyricum 5521] gi|237668664|ref|ZP_04528648.1| ribosomal RNA small subunit methyltransferase B [Clostridium butyricum E4 str. BoNT E BL5262] gi|182375715|gb|EDT73315.1| ribosomal RNA small subunit methyltransferase B [Clostridium butyricum 5521] gi|237657012|gb|EEP54568.1| ribosomal RNA small subunit methyltransferase B [Clostridium butyricum E4 str. BoNT E BL5262] Length = 438 Score = 83.6 bits (206), Expect = 8e-15, Method: Composition-based stats. Identities = 28/139 (20%), Positives = 57/139 (41%), Gaps = 15/139 (10%) Query: 20 RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79 R AV+ L +++E EL+ E D I++GV+ R Sbjct: 4 RKLAVKIL----------NRVLNEGAYSNIILSKELN-EVELNDKDKALLTEIVYGVLRR 52 Query: 80 KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139 K+ +D++I++ + +D + +ILR + ++ +P +E V A + Sbjct: 53 KRTLDVIIANFVK---DIKLMDKNILNILRVAIYQMNFLDKIPTYAACNEAVEEAKEISE 109 Query: 140 GDEPKFINAVLDKVSRKEE 158 D K +N +L ++ + Sbjct: 110 NDS-KLVNGILRSFTKNPD 127 >gi|328957299|ref|YP_004374685.1| ribosomal RNA small subunit methyltransferase B [Carnobacterium sp. 17-4] gi|328673623|gb|AEB29669.1| ribosomal RNA small subunit methyltransferase B [Carnobacterium sp. 17-4] Length = 458 Score = 83.6 bits (206), Expect = 8e-15, Method: Composition-based stats. Identities = 34/155 (21%), Positives = 63/155 (40%), Gaps = 19/155 (12%) Query: 2 TIQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVY 61 K+++K + +R A+ L E + +Y E ++ Sbjct: 4 NQTPEKRNVKKT-----SRYLAMSIL-----------ERTDKTGSYSNLLINEAIQKNKL 47 Query: 62 LHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSV 121 D +++GV+ RK +D +S L E ++D+ + ++LR + ++I + Sbjct: 48 SAADARLLTELVYGVLQRKLTLDFYLSPFLNED---KKIDIWVRNLLRLSIYQMIYLDKI 104 Query: 122 PVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRK 156 PV I+ E V +A + KFIN VL R Sbjct: 105 PVHAILFEAVEVAKKKGHVGISKFINGVLRNADRN 139 >gi|163941603|ref|YP_001646487.1| sun protein [Bacillus weihenstephanensis KBAB4] gi|163863800|gb|ABY44859.1| sun protein [Bacillus weihenstephanensis KBAB4] Length = 444 Score = 83.6 bits (206), Expect = 9e-15, Method: Composition-based stats. Identities = 26/141 (18%), Positives = 55/141 (39%), Gaps = 16/141 (11%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 R R A+ L Q++ G + ++ L ++ D+ +++G Sbjct: 2 RQNVRELALDGLIQVEKSGAYSNLLL-----------NNLIEKNTIDRKDIGLLTEMVYG 50 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135 + R+ +D + L +K ++ + +LR + +++ VP I E V IA Sbjct: 51 TIQRRDTLDYYLQPFLRKK-----VEAWVRVLLRLSLYQMLYLDRVPERAAIHEAVEIAK 105 Query: 136 DFFYGDEPKFINAVLDKVSRK 156 + +N VL + R+ Sbjct: 106 RRGHKGISGMVNGVLRSIQRE 126 >gi|116747600|ref|YP_844287.1| sun protein [Syntrophobacter fumaroxidans MPOB] gi|116696664|gb|ABK15852.1| sun protein [Syntrophobacter fumaroxidans MPOB] Length = 449 Score = 83.6 bits (206), Expect = 9e-15, Method: Composition-based stats. Identities = 27/138 (19%), Positives = 52/138 (37%), Gaps = 12/138 (8%) Query: 19 ARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMD 78 AR+ A Q L +D +I L D +++GV+ Sbjct: 4 ARVLAFQILLHMDRDASHPDRLIRGM----------LGRHERLEERDRALLTELVYGVLR 53 Query: 79 RKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFF 138 + +D I L+ ++D + +LR + +++ +P ++E V +A Sbjct: 54 WQGRLDWHIDQ-LSRTRP-EKIDPAVRILLRLALYQILMLDRIPDHAAVNEAVNMAKTTQ 111 Query: 139 YGDEPKFINAVLDKVSRK 156 KF+N VL + R+ Sbjct: 112 PAYLVKFVNGVLREALRR 129 >gi|225569232|ref|ZP_03778257.1| hypothetical protein CLOHYLEM_05314 [Clostridium hylemonae DSM 15053] gi|225162031|gb|EEG74650.1| hypothetical protein CLOHYLEM_05314 [Clostridium hylemonae DSM 15053] Length = 434 Score = 83.2 bits (205), Expect = 1e-14, Method: Composition-based stats. Identities = 29/128 (22%), Positives = 55/128 (42%), Gaps = 2/128 (1%) Query: 31 DIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSC 90 ++I + +I E E L+ + +I+G ++ ID +I+ Sbjct: 9 ELILDTLLQITREGEYCHIALRNVLEKYQYLDKKQRAFITRVINGTLEHLIEIDYIINQF 68 Query: 91 LTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVL 150 K +R+ ++ +I+R+GV +L SVP + +E V +A + F+N VL Sbjct: 69 --SKVKVNRMKPVIGAIIRSGVYQLKYMDSVPDSAVCNEAVKLAEKRGFASLKAFVNGVL 126 Query: 151 DKVSRKEE 158 +SR Sbjct: 127 RNISRNMN 134 >gi|83319650|ref|YP_424054.1| N utilization substance protein B (nusB), putative [Mycoplasma capricolum subsp. capricolum ATCC 27343] gi|83283536|gb|ABC01468.1| N utilization substance protein B (nusB), putative [Mycoplasma capricolum subsp. capricolum ATCC 27343] Length = 132 Score = 83.2 bits (205), Expect = 1e-14, Method: Composition-based stats. Identities = 30/136 (22%), Positives = 59/136 (43%), Gaps = 14/136 (10%) Query: 20 RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79 R +QA Y+ ++ S I + LD + + L + +I ++ Sbjct: 11 RKLLIQAFYKYQLLNASIDYIYQDV----------LDDVQNFNNKQLLFEINLI---AEK 57 Query: 80 KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139 + + I+ ++ W + R+ ++ +IL G E++ P V I+E V + Sbjct: 58 QVDLINHININISSNWKWDRIPAVIRAILIVGTYEILYT-DTPKPVTINEMVNYVKEIEP 116 Query: 140 GDEPKFINAVLDKVSR 155 + KF+NAVLDK+ + Sbjct: 117 DFDYKFVNAVLDKIIK 132 >gi|315646179|ref|ZP_07899299.1| sun protein [Paenibacillus vortex V453] gi|315278378|gb|EFU41694.1| sun protein [Paenibacillus vortex V453] Length = 460 Score = 83.2 bits (205), Expect = 1e-14, Method: Composition-based stats. Identities = 26/157 (16%), Positives = 62/157 (39%), Gaps = 18/157 (11%) Query: 1 MTIQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESV 60 M+ N K + S R A+ L Q++ G + +++ ++ Sbjct: 1 MSGNRNPKGRQESP-----RELAMNVLTQVEQEGAYSNLLLNSALQ-----------KAS 44 Query: 61 YLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHS 120 D +I+G + R +D + + + ++L + ++LR + +++ Sbjct: 45 LSKSDAGLATELIYGTISRLNTLDYFLDRYVNKG--VAKLQPWVRALLRMSLYQVVYLDR 102 Query: 121 VPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKE 157 +P ++SE V +A + +N VL + R++ Sbjct: 103 IPDHAVVSEAVNLAKRRGHQGISGMVNGVLRNILRQK 139 >gi|253580147|ref|ZP_04857414.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA] gi|251848666|gb|EES76629.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA] Length = 450 Score = 82.8 bits (204), Expect = 1e-14, Method: Composition-based stats. Identities = 30/139 (21%), Positives = 54/139 (38%), Gaps = 16/139 (11%) Query: 20 RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79 R +Q L EI E + L + + + G ++ Sbjct: 8 RELILQIL----------LEIEEEGKHSHIAIRNALSKYQFLPRQERAFITRVCEGTLEY 57 Query: 80 KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA--HDF 137 + ID +I S K S ++ ++ ILR+ V ++ SVP + +E V +A F Sbjct: 58 RILIDYIIDSY--SKVSVDKMKPVIREILRSAVYQIRFMDSVPDSAVCNEAVKLAQRKGF 115 Query: 138 FYGDEPKFINAVLDKVSRK 156 + F+N VL ++R+ Sbjct: 116 YSLK--PFVNGVLRTIARE 132 >gi|222054190|ref|YP_002536552.1| sun protein [Geobacter sp. FRC-32] gi|221563479|gb|ACM19451.1| sun protein [Geobacter sp. FRC-32] Length = 448 Score = 82.8 bits (204), Expect = 1e-14, Method: Composition-based stats. Identities = 31/123 (25%), Positives = 54/123 (43%), Gaps = 6/123 (4%) Query: 39 EIISEYETYRFCADTELDVE---SVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKW 95 EI+ + R AD +D E D +++GV+ R+ +D +I ++ Sbjct: 12 EILLRIDKERSYADILIDRELSAGALQGPDRGLLTELVYGVLRRQATLDHIIRRFSSQ-- 69 Query: 96 SFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSR 155 RL+ + +LR G+ ++ VPV ++E V +A FINAVL R Sbjct: 70 RLERLERSVLLLLRIGLYQMFYLDRVPVSAAVNETVKLAKVLV-PRASGFINAVLRNADR 128 Query: 156 KEE 158 + + Sbjct: 129 ERD 131 >gi|323487019|ref|ZP_08092331.1| ribosomal RNA small subunit methyltransferase B [Clostridium symbiosum WAL-14163] gi|323399667|gb|EGA92053.1| ribosomal RNA small subunit methyltransferase B [Clostridium symbiosum WAL-14163] Length = 444 Score = 82.8 bits (204), Expect = 1e-14, Method: Composition-based stats. Identities = 21/120 (17%), Positives = 51/120 (42%), Gaps = 2/120 (1%) Query: 39 EIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFS 98 E++ + + L D + + ++ G ++ + +D +++S K + Sbjct: 18 EVLEKGKYSHVILSQALTKYQYLEKQDRSFIKRVVDGTVEYRIQLDYILNSY--SKVKVN 75 Query: 99 RLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEE 158 ++ ++ +ILR ++ VP +E V +A + F+N VL +SR ++ Sbjct: 76 KMKPVIRTILRMSAYQICHMDRVPDSAACNEAVKLAEKRGFSGLKGFVNGVLRSISRGKD 135 >gi|308177500|ref|YP_003916906.1| transcription antitermination factor NusB [Arthrobacter arilaitensis Re117] gi|307744963|emb|CBT75935.1| transcription antitermination factor NusB [Arthrobacter arilaitensis Re117] Length = 136 Score = 82.8 bits (204), Expect = 2e-14, Method: Composition-based stats. Identities = 32/127 (25%), Positives = 56/127 (44%), Gaps = 14/127 (11%) Query: 27 LYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLL 86 L++ + + + + R +D L+ E+ II GVM ID + Sbjct: 15 LFEAEARDVNPLAVA---ISRRENSDIVLN----------EYSLTIIEGVMAHLDRIDEV 61 Query: 87 ISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFI 146 + S + W+ R+ + S LR GV EL+ VP V ++E V + + P+F+ Sbjct: 62 LESY-VKDWTIERMPAVDRSALRIGVWELLYNDDVPDAVAVAEAVVNVRELSTDESPEFV 120 Query: 147 NAVLDKV 153 N VL ++ Sbjct: 121 NGVLGRI 127 >gi|254797209|ref|YP_003082050.1| putative N utilization substance protein B [Neorickettsia risticii str. Illinois] gi|254590448|gb|ACT69810.1| putative N utilization substance protein B [Neorickettsia risticii str. Illinois] Length = 141 Score = 82.5 bits (203), Expect = 2e-14, Method: Composition-based stats. Identities = 37/149 (24%), Positives = 63/149 (42%), Gaps = 8/149 (5%) Query: 12 LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71 + + +ARL +++ Y E+IS EL DL Sbjct: 1 MPSEKRVARLLSIEVCYSSYFSDLPQPELIS--------RALELQEVPYMRRYDLGLLNS 52 Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131 I+ + LI L+E+W R+D + S+LR + EL + ++I+EYV Sbjct: 53 ILGLCFANIKADTELIGRFLSEEWEIDRMDNLKLSLLRVAISELRLSNIAQKNLVINEYV 112 Query: 132 CIAHDFFYGDEPKFINAVLDKVSRKEEIK 160 + F E FINA+L+K++ + + K Sbjct: 113 SLGRLFLPVKEVGFINAILEKLTSEIQGK 141 >gi|237795946|ref|YP_002863498.1| ribosomal RNA small subunit methyltransferase B [Clostridium botulinum Ba4 str. 657] gi|229261794|gb|ACQ52827.1| ribosomal RNA small subunit methyltransferase B [Clostridium botulinum Ba4 str. 657] Length = 442 Score = 82.5 bits (203), Expect = 2e-14, Method: Composition-based stats. Identities = 28/143 (19%), Positives = 55/143 (38%), Gaps = 14/143 (9%) Query: 19 ARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMD 78 AR A+ L + G + ++S+ D D I++G + Sbjct: 4 AREVALDVLKAVLFEGAYSNIVLSKKLNKSNLKDN-----------DKALITEIVYGTLK 52 Query: 79 RKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFF 138 K+ +D++I S L +D + +ILR + ++ +P ++E V ++ Sbjct: 53 YKETLDIIIQSYLRN--PIKTMDKNIINILRITIYQIRYLDKIPSFAAVNEAVEMSKKIS 110 Query: 139 YGDEPKFINAVLDKVSRKEEIKR 161 K +N VL R + K+ Sbjct: 111 IKYS-KLVNGVLRNYIRTYKNKK 132 >gi|226949860|ref|YP_002804951.1| ribosomal RNA small subunit methyltransferase B [Clostridium botulinum A2 str. Kyoto] gi|226843504|gb|ACO86170.1| ribosomal RNA small subunit methyltransferase B [Clostridium botulinum A2 str. Kyoto] Length = 442 Score = 82.5 bits (203), Expect = 2e-14, Method: Composition-based stats. Identities = 28/143 (19%), Positives = 55/143 (38%), Gaps = 14/143 (9%) Query: 19 ARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMD 78 AR A+ L + G + ++S+ D D I++G + Sbjct: 4 AREVALDVLKAVLFEGAYSNIVLSKKLNKSNLKDN-----------DKALITEIVYGTLK 52 Query: 79 RKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFF 138 K+ +D++I S L +D + +ILR + ++ +P ++E V ++ Sbjct: 53 YKETLDIIIQSYLRN--PIKTMDKNIVNILRITIYQIRYLDKIPSFAAVNEAVEMSKKIS 110 Query: 139 YGDEPKFINAVLDKVSRKEEIKR 161 K +N VL R + K+ Sbjct: 111 IKYS-KLVNGVLRNYIRTYKNKK 132 >gi|188588047|ref|YP_001920563.1| ribosomal RNA small subunit methyltransferase B [Clostridium botulinum E3 str. Alaska E43] gi|251779411|ref|ZP_04822331.1| ribosomal RNA small subunit methyltransferase B [Clostridium botulinum E1 str. 'BoNT E Beluga'] gi|188498328|gb|ACD51464.1| ribosomal RNA small subunit methyltransferase B [Clostridium botulinum E3 str. Alaska E43] gi|243083726|gb|EES49616.1| ribosomal RNA small subunit methyltransferase B [Clostridium botulinum E1 str. 'BoNT E Beluga'] Length = 438 Score = 82.5 bits (203), Expect = 2e-14, Method: Composition-based stats. Identities = 31/139 (22%), Positives = 56/139 (40%), Gaps = 15/139 (10%) Query: 20 RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79 R AV+ L +I E EL+ E+ D I++GV+ R Sbjct: 4 RNLAVKIL----------KRVIDEGAYSNIILSNELN-EANLEERDKALLTEIVYGVLRR 52 Query: 80 KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139 K+ +DL+I++ + +D + +ILR + ++ VP +E V A Sbjct: 53 KKTLDLIIANFVR---DIKLMDHEVLNILRVAIYQMTFLDKVPTYAACNEAVDEAKKIS- 108 Query: 140 GDEPKFINAVLDKVSRKEE 158 + K +N +L S+ + Sbjct: 109 PEAGKLVNGILRNFSKDPD 127 >gi|153938943|ref|YP_001391803.1| ribosomal RNA small subunit methyltransferase B [Clostridium botulinum F str. Langeland] gi|152934839|gb|ABS40337.1| ribosomal RNA small subunit methyltransferase B [Clostridium botulinum F str. Langeland] Length = 442 Score = 82.5 bits (203), Expect = 2e-14, Method: Composition-based stats. Identities = 28/143 (19%), Positives = 55/143 (38%), Gaps = 14/143 (9%) Query: 19 ARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMD 78 AR A+ L + G + ++S+ D D I++G + Sbjct: 4 AREVALDVLKAVLFEGAYSNIVLSKKLNKSNLKDN-----------DKALITEIVYGTLK 52 Query: 79 RKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFF 138 K+ +D++I S L +D + +ILR + ++ +P ++E V ++ Sbjct: 53 YKETLDIIIQSYLRN--PIKTMDKNIVNILRITIYQIRYLDKIPSFAAVNEAVEMSKKIS 110 Query: 139 YGDEPKFINAVLDKVSRKEEIKR 161 K +N VL R + K+ Sbjct: 111 IKYS-KLVNGVLRNYIRTYKNKK 132 >gi|148380461|ref|YP_001255002.1| ribosomal RNA small subunit methyltransferase B [Clostridium botulinum A str. ATCC 3502] gi|153931256|ref|YP_001384684.1| ribosomal RNA small subunit methyltransferase B [Clostridium botulinum A str. ATCC 19397] gi|153936344|ref|YP_001388205.1| ribosomal RNA small subunit methyltransferase B [Clostridium botulinum A str. Hall] gi|168180610|ref|ZP_02615274.1| ribosomal RNA small subunit methyltransferase B [Clostridium botulinum NCTC 2916] gi|170756128|ref|YP_001782050.1| ribosomal RNA small subunit methyltransferase B [Clostridium botulinum B1 str. Okra] gi|148289945|emb|CAL84058.1| putative ribosomal RNA methyltransferase [Clostridium botulinum A str. ATCC 3502] gi|152927300|gb|ABS32800.1| ribosomal RNA small subunit methyltransferase B [Clostridium botulinum A str. ATCC 19397] gi|152932258|gb|ABS37757.1| ribosomal RNA small subunit methyltransferase B [Clostridium botulinum A str. Hall] gi|169121340|gb|ACA45176.1| ribosomal RNA small subunit methyltransferase B [Clostridium botulinum B1 str. Okra] gi|182668623|gb|EDT80602.1| ribosomal RNA small subunit methyltransferase B [Clostridium botulinum NCTC 2916] Length = 442 Score = 82.5 bits (203), Expect = 2e-14, Method: Composition-based stats. Identities = 28/143 (19%), Positives = 55/143 (38%), Gaps = 14/143 (9%) Query: 19 ARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMD 78 AR A+ L + G + ++S+ D D I++G + Sbjct: 4 AREVALDVLKAVLFEGAYSNIVLSKKLNKSNLKDN-----------DKALITEIVYGTLK 52 Query: 79 RKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFF 138 K+ +D++I S L +D + +ILR + ++ +P ++E V ++ Sbjct: 53 YKETLDIIIQSYLRN--PIKTMDKNIVNILRITIYQIRYLDKIPSFAAVNEAVEMSKKIS 110 Query: 139 YGDEPKFINAVLDKVSRKEEIKR 161 K +N VL R + K+ Sbjct: 111 IKYS-KLVNGVLRNYIRTYKNKK 132 >gi|187933697|ref|YP_001885416.1| ribosomal RNA small subunit methyltransferase B [Clostridium botulinum B str. Eklund 17B] gi|187721850|gb|ACD23071.1| ribosomal RNA small subunit methyltransferase B [Clostridium botulinum B str. Eklund 17B] Length = 438 Score = 82.5 bits (203), Expect = 2e-14, Method: Composition-based stats. Identities = 31/139 (22%), Positives = 56/139 (40%), Gaps = 15/139 (10%) Query: 20 RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79 R AV+ L +I E EL+ E+ D I++GV+ R Sbjct: 4 RNLAVKIL----------KRVIDEGAYSNIILSNELN-EANLEERDKALLTEIVYGVLRR 52 Query: 80 KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139 K+ +DL+I++ + +D + +ILR + ++ VP +E V A Sbjct: 53 KKTLDLIIANFVR---DIKLMDHEVLNILRVAIYQMTFLDKVPTYAACNEAVDEAKKIS- 108 Query: 140 GDEPKFINAVLDKVSRKEE 158 + K +N +L S+ + Sbjct: 109 PEAGKLVNGILRNFSKDPD 127 >gi|322806774|emb|CBZ04343.1| ribosomal RNA small subunit methyltransferase B [Clostridium botulinum H04402 065] Length = 442 Score = 82.5 bits (203), Expect = 2e-14, Method: Composition-based stats. Identities = 28/143 (19%), Positives = 55/143 (38%), Gaps = 14/143 (9%) Query: 19 ARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMD 78 AR A+ L + G + ++S+ D D I++G + Sbjct: 4 AREVALDVLKAVLFEGAYSNIVLSKKLNKSNLKDN-----------DKALITEIVYGTLK 52 Query: 79 RKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFF 138 K+ +D++I S L +D + +ILR + ++ +P ++E V ++ Sbjct: 53 YKETLDIIIQSYLRN--PIKTMDKNIVNILRITIYQIRYLDKIPSFAAVNEAVEMSKKIS 110 Query: 139 YGDEPKFINAVLDKVSRKEEIKR 161 K +N VL R + K+ Sbjct: 111 IKYS-KLVNGVLRNYIRTYKNKK 132 >gi|308272081|emb|CBX28689.1| hypothetical protein N47_G40130 [uncultured Desulfobacterium sp.] Length = 450 Score = 82.5 bits (203), Expect = 2e-14, Method: Composition-based stats. Identities = 27/137 (19%), Positives = 57/137 (41%), Gaps = 13/137 (9%) Query: 20 RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79 R A+Q L +D + ++ E++ E F +++GV+ Sbjct: 5 RSLAIQFLNSLDKKKHTLDSLLEEFQNKYILPKRE-----------KALFNALVYGVLRW 53 Query: 80 KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139 + +D +I + + + + +ILR G+ ++I + +PV ++ V IA Sbjct: 54 RSRLDWIIRQFSKQ--PPEKTNTEILNILRIGLFQIIHLNRIPVSAAVNTSVEIAKHTVG 111 Query: 140 GDEPKFINAVLDKVSRK 156 ++NAVL + R+ Sbjct: 112 TKCSGYVNAVLRRTVRE 128 >gi|229541137|ref|ZP_04430197.1| sun protein [Bacillus coagulans 36D1] gi|229325557|gb|EEN91232.1| sun protein [Bacillus coagulans 36D1] Length = 447 Score = 82.5 bits (203), Expect = 2e-14, Method: Composition-based stats. Identities = 31/144 (21%), Positives = 57/144 (39%), Gaps = 16/144 (11%) Query: 12 LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71 +S R R AA++ L E + + E+Y + + D Sbjct: 1 MSKERKNVREAALELL-----------EAVEKNESYSNLLLDRYIEKYRFHGPDRALLTE 49 Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131 I +G + RKQ +D ++ L +K ++ + +LR + +++ +P II E V Sbjct: 50 ITYGTLQRKQTLDYFLAPFLRKK-----IENWVRILLRLSLYQMVYLDKIPDRAIIFEAV 104 Query: 132 CIAHDFFYGDEPKFINAVLDKVSR 155 IA + +N VL + R Sbjct: 105 EIAKKRGHRGISGIVNGVLRAIQR 128 >gi|83589751|ref|YP_429760.1| sun protein [Moorella thermoacetica ATCC 39073] gi|83572665|gb|ABC19217.1| sun protein [Moorella thermoacetica ATCC 39073] Length = 457 Score = 82.5 bits (203), Expect = 2e-14, Method: Composition-based stats. Identities = 26/141 (18%), Positives = 54/141 (38%), Gaps = 13/141 (9%) Query: 19 ARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMD 78 AR AA+Q +Y+ ++E Y A E+ + + + + + Sbjct: 10 AREAALQVIYR-----------VTEEGAYAGLALDEVLKSAGLDGRERALATELAYSAIK 58 Query: 79 RKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFF 138 +D + L + +L + +LR G +L+ +P I E V +A + Sbjct: 59 AWGTLDWALGLFLRQ--PLEKLPPWIRCVLRLGATQLLYVPRIPPRAAIYETVELAKKYG 116 Query: 139 YGDEPKFINAVLDKVSRKEEI 159 + +N VL + R+++ Sbjct: 117 HRGTTGLVNGVLRHLDRQKDA 137 >gi|170758272|ref|YP_001787822.1| ribosomal RNA small subunit methyltransferase B [Clostridium botulinum A3 str. Loch Maree] gi|169405261|gb|ACA53672.1| ribosomal RNA small subunit methyltransferase B [Clostridium botulinum A3 str. Loch Maree] Length = 442 Score = 82.5 bits (203), Expect = 2e-14, Method: Composition-based stats. Identities = 28/143 (19%), Positives = 55/143 (38%), Gaps = 14/143 (9%) Query: 19 ARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMD 78 AR A+ L + G + ++S+ D D I++G + Sbjct: 4 AREVALDVLKAVLFEGAYSNIVLSKKLNKSNLKDN-----------DKALITEIVYGTLK 52 Query: 79 RKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFF 138 K+ +D++I S L +D + +ILR + ++ +P ++E V ++ Sbjct: 53 YKETLDIIIQSYLRN--PIKTMDKNIVNILRITIYQIRYLDKIPSFAAVNEAVEMSKKIS 110 Query: 139 YGDEPKFINAVLDKVSRKEEIKR 161 K +N VL R + K+ Sbjct: 111 IKYS-KLVNGVLRNYIRTYKNKK 132 >gi|323692061|ref|ZP_08106308.1| sun protein [Clostridium symbiosum WAL-14673] gi|323503861|gb|EGB19676.1| sun protein [Clostridium symbiosum WAL-14673] Length = 449 Score = 82.5 bits (203), Expect = 2e-14, Method: Composition-based stats. Identities = 21/120 (17%), Positives = 51/120 (42%), Gaps = 2/120 (1%) Query: 39 EIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFS 98 E++ + + L D + + ++ G ++ + +D +++S K + Sbjct: 23 EVLEKGKYSHVILSQALTKYQYLEKQDRSFIKRVVDGTVEYRIQLDYILNSY--SKVKVN 80 Query: 99 RLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEE 158 ++ ++ +ILR ++ VP +E V +A + F+N VL +SR ++ Sbjct: 81 KMKPVIRTILRMSAYQICHMDRVPDSAACNEAVKLAEKRGFSGLKGFVNGVLRSISRGKD 140 >gi|212550794|ref|YP_002309111.1| transcription termination factor NusB [Candidatus Azobacteroides pseudotrichonymphae genomovar. CFP2] gi|212549032|dbj|BAG83700.1| transcription termination factor NusB [Candidatus Azobacteroides pseudotrichonymphae genomovar. CFP2] Length = 305 Score = 82.1 bits (202), Expect = 2e-14, Method: Composition-based stats. Identities = 18/96 (18%), Positives = 46/96 (47%), Gaps = 1/96 (1%) Query: 67 EWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVI 126 E+ ++ + + LI + + + W R+ ++ I++ + EL ++P++V Sbjct: 211 EYAIQLLRSSIIEAEENSDLIDTQM-KNWDKKRIALLDLIIMQMALAELNNFPAIPLKVT 269 Query: 127 ISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRS 162 ++EY+ +A + FIN +L + +I ++ Sbjct: 270 LNEYIDLARYYSTPKSTSFINGILQAIVSILKINKN 305 >gi|290968496|ref|ZP_06560035.1| ribosomal RNA small subunit methyltransferase B [Megasphaera genomosp. type_1 str. 28L] gi|290781492|gb|EFD94081.1| ribosomal RNA small subunit methyltransferase B [Megasphaera genomosp. type_1 str. 28L] Length = 442 Score = 82.1 bits (202), Expect = 2e-14, Method: Composition-based stats. Identities = 25/100 (25%), Positives = 44/100 (44%), Gaps = 2/100 (2%) Query: 60 VYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECH 119 D ++ +++G + +D I + K S ++D + +ILR G+ +L Sbjct: 33 ALSDRDRRFYTELVYGTLRYMAMLDRAIG--MLSKRSLQQMDAVCAAILRLGLYQLQYLD 90 Query: 120 SVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEI 159 VP E V +A + KF+NAVL R+ E+ Sbjct: 91 KVPPSAACYEAVALARKMGHEGMAKFVNAVLRNALRRPEV 130 >gi|251797738|ref|YP_003012469.1| sun protein [Paenibacillus sp. JDR-2] gi|247545364|gb|ACT02383.1| sun protein [Paenibacillus sp. JDR-2] Length = 491 Score = 82.1 bits (202), Expect = 2e-14, Method: Composition-based stats. Identities = 25/153 (16%), Positives = 56/153 (36%), Gaps = 14/153 (9%) Query: 4 QDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLH 63 Q+ +K+ + + R R A+ L ++E Y + E+ Sbjct: 26 QEGRKEQRPARVRTP-RELALDTL-----------VKVAETGAYSNLQLNRVLQEAQLQR 73 Query: 64 VDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPV 123 D +++G + R+ +D + + +L+ + +LR +L+ +P Sbjct: 74 ADAALVTELVYGTIQRQLTLDHWLGKFAAKG--LRKLEPWVHQLLRMSAYQLLYLDRIPA 131 Query: 124 EVIISEYVCIAHDFFYGDEPKFINAVLDKVSRK 156 ++E V IA + +N +L + R Sbjct: 132 HAAVNEAVTIAKRRGHQGISGMVNGILRSIDRN 164 >gi|257868127|ref|ZP_05647780.1| sun protein [Enterococcus casseliflavus EC30] gi|257874598|ref|ZP_05654251.1| sun protein [Enterococcus casseliflavus EC10] gi|257802241|gb|EEV31113.1| sun protein [Enterococcus casseliflavus EC30] gi|257808762|gb|EEV37584.1| sun protein [Enterococcus casseliflavus EC10] Length = 452 Score = 82.1 bits (202), Expect = 2e-14, Method: Composition-based stats. Identities = 29/137 (21%), Positives = 54/137 (39%), Gaps = 14/137 (10%) Query: 20 RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79 R A++AL +I+ G + ++ E D D +++G + R Sbjct: 13 RFVALEALLRIEKGGAYSNLLLRELMNQGRLNDK-----------DGRLLTELVYGTISR 61 Query: 80 KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139 + +D + + D + ++LR + +++ VP II E V IA Sbjct: 62 QLLLDYYLDRFIKNARKV---DPWVKTLLRLSLYQMLYLDKVPAHAIIHEAVDIAKAKGN 118 Query: 140 GDEPKFINAVLDKVSRK 156 KF+N VL + R+ Sbjct: 119 PGTGKFVNGVLRTIQRQ 135 >gi|257877736|ref|ZP_05657389.1| sun protein [Enterococcus casseliflavus EC20] gi|257811902|gb|EEV40722.1| sun protein [Enterococcus casseliflavus EC20] Length = 452 Score = 82.1 bits (202), Expect = 3e-14, Method: Composition-based stats. Identities = 29/137 (21%), Positives = 54/137 (39%), Gaps = 14/137 (10%) Query: 20 RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79 R A++AL +I+ G + ++ E D D +++G + R Sbjct: 13 RFVALEALLRIEKGGAYSNLLLRELMNQGRLNDK-----------DGRLLTELVYGTISR 61 Query: 80 KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139 + +D + + D + ++LR + +++ VP II E V IA Sbjct: 62 QLLLDYYLDRFIKNARKV---DPWVKTLLRLSLYQMLYLDKVPAHAIIHEAVDIAKAKGN 118 Query: 140 GDEPKFINAVLDKVSRK 156 KF+N VL + R+ Sbjct: 119 PGTGKFVNGVLRTIQRQ 135 >gi|227485064|ref|ZP_03915380.1| possible transcription antitermination protein NusB [Anaerococcus lactolyticus ATCC 51172] gi|227236897|gb|EEI86912.1| possible transcription antitermination protein NusB [Anaerococcus lactolyticus ATCC 51172] Length = 128 Score = 82.1 bits (202), Expect = 3e-14, Method: Composition-based stats. Identities = 30/144 (20%), Positives = 57/144 (39%), Gaps = 18/144 (12%) Query: 15 RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74 +R R + ++Q +T DT+ + + L+ D + I+ Sbjct: 2 KRTDQREWVFKLIFQ---------------DTINKIEDTKDLLSNHKLNEDETFIVESIN 46 Query: 75 GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134 + ID ++ + +L ++ SI+ + E+ +PV V I+E V IA Sbjct: 47 SYKKNFEKIDKILQDNAPKGMP--KLSRVVKSIIYLSINEI-YFLDIPVSVSINEAVNIA 103 Query: 135 HDFFYGDEPKFINAVLDKVSRKEE 158 F D+ K +N +L + R E Sbjct: 104 KKFSNEDDYKIVNLILGNIVRNEN 127 >gi|145224311|ref|YP_001134989.1| Fmu (Sun) domain-containing protein [Mycobacterium gilvum PYR-GCK] gi|315444643|ref|YP_004077522.1| tRNA/rRNA cytosine-C5-methylase [Mycobacterium sp. Spyr1] gi|145216797|gb|ABP46201.1| Fmu (Sun) domain protein [Mycobacterium gilvum PYR-GCK] gi|315262946|gb|ADT99687.1| tRNA/rRNA cytosine-C5-methylase [Mycobacterium sp. Spyr1] Length = 462 Score = 82.1 bits (202), Expect = 3e-14, Method: Composition-based stats. Identities = 36/167 (21%), Positives = 61/167 (36%), Gaps = 17/167 (10%) Query: 6 NKKDLKLSHRRGI---ARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYL 62 + D K RR AR AA L +SE ++Y A L + Sbjct: 2 TRPDKKRPPRRKRLDPARQAAFDVL-----------RAVSERDSYANLALPALLRDRRIT 50 Query: 63 HVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVP 122 D + + +G K +D +I++ +D IL +LR G +++ V Sbjct: 51 GRDAAFATELTYGTCRAKGLLDAVIAAA--AGRPVDHIDPILLDLLRLGAYQIL-RTRVD 107 Query: 123 VEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRSGCVSAIT 169 +S V A F F+N VL ++R++E ++ Sbjct: 108 DHAAVSTTVEQAGLEFDTARAGFVNGVLRTIARRDEADWVAELAPPA 154 >gi|329574370|gb|EGG55942.1| transcription antitermination protein NusB domain protein [Enterococcus faecalis TX1467] Length = 59 Score = 82.1 bits (202), Expect = 3e-14, Method: Composition-based stats. Identities = 15/58 (25%), Positives = 29/58 (50%) Query: 103 ILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIK 160 I ILR + E++ VP V ++E V ++ + KF+N VL + ++ + + Sbjct: 1 IDIVILRLAIFEMLYVSDVPNIVALNEAVELSKKYSDDRSRKFVNGVLSNLMKEIDSE 58 >gi|238926271|ref|ZP_04658031.1| rRNA SAM-dependent methyltransferase RmsB [Selenomonas flueggei ATCC 43531] gi|238885951|gb|EEQ49589.1| rRNA SAM-dependent methyltransferase RmsB [Selenomonas flueggei ATCC 43531] Length = 449 Score = 82.1 bits (202), Expect = 3e-14, Method: Composition-based stats. Identities = 25/148 (16%), Positives = 49/148 (33%), Gaps = 16/148 (10%) Query: 20 RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79 R A+Q L +I G ++E + D + +++G + Sbjct: 14 REQAMQVLLRIHSEGAYANVALAEELRI-----------AQMTERDRRFLTELVYGTVKA 62 Query: 80 KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139 + +D +I + + + +LR G ++ +P + V +A Sbjct: 63 GETLDYMIRRYVA---DLKKAQPPIRELLRLGFYQIFFMDKIPSSAVCHTAVELAKKHGG 119 Query: 140 GDEPKFINAVLDKVSRKEEIKRSGCVSA 167 F+N VL R E KR+ Sbjct: 120 KGAASFVNGVLRTALR--EPKRAALPQG 145 >gi|325479479|gb|EGC82575.1| transcription antitermination factor NusB [Anaerococcus prevotii ACS-065-V-Col13] Length = 127 Score = 81.7 bits (201), Expect = 3e-14, Method: Composition-based stats. Identities = 33/143 (23%), Positives = 53/143 (37%), Gaps = 19/143 (13%) Query: 15 RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74 R R + +YQ I + I E D E+ + I+ Sbjct: 2 NRAEQREWVFKLIYQDMISHTDDIDKIIEENGLS----------------DEEFVKESIN 45 Query: 75 GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134 I+ + L RL +L +IL + E+ VPV V I+E V +A Sbjct: 46 SYFSNISSIEEKLKENLDS--RSKRLAKVLRAILYLSLNEI-YYLGVPVSVSINEAVNLA 102 Query: 135 HDFFYGDEPKFINAVLDKVSRKE 157 + D+ K IN++L + RK+ Sbjct: 103 KKYSDKDDYKLINSILGSIVRKD 125 >gi|325567768|ref|ZP_08144379.1| RNA methyltransferase Sun [Enterococcus casseliflavus ATCC 12755] gi|325158541|gb|EGC70688.1| RNA methyltransferase Sun [Enterococcus casseliflavus ATCC 12755] Length = 452 Score = 81.7 bits (201), Expect = 3e-14, Method: Composition-based stats. Identities = 29/137 (21%), Positives = 54/137 (39%), Gaps = 14/137 (10%) Query: 20 RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79 R A++AL +I+ G + ++ E D D +++G + R Sbjct: 13 RFVALEALLRIEKGGAYSNLLLRELMNQGRLNDK-----------DGRLLTELVYGTISR 61 Query: 80 KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139 + +D + + D + ++LR + +++ VP II E V IA Sbjct: 62 QLLLDYYLDRFIKNARKV---DPWVKTLLRLSLYQMLYLDKVPAHAIIHEAVDIAKAKGN 118 Query: 140 GDEPKFINAVLDKVSRK 156 KF+N VL + R+ Sbjct: 119 PGTGKFVNGVLRTIQRQ 135 >gi|269218525|ref|ZP_06162379.1| B-like utilization substance protein [Actinomyces sp. oral taxon 848 str. F0332] gi|269211636|gb|EEZ77976.1| B-like utilization substance protein [Actinomyces sp. oral taxon 848 str. F0332] Length = 171 Score = 81.7 bits (201), Expect = 3e-14, Method: Composition-based stats. Identities = 32/156 (20%), Positives = 65/156 (41%), Gaps = 12/156 (7%) Query: 1 MTIQDNKKDLKLS-HRRGIARLAAVQALYQIDIIGC-STTEIISEYETYRFCADTELDVE 58 M Q ++ K R R A+ +++ D G ++++ R + ++ + Sbjct: 1 MDEQSKRRRRKDGFTARTKQRNRALDVVFEADERGLLGQGDLLALLGERRVVSTSQSPI- 59 Query: 59 SVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIEC 118 ++ I+ + ID I +E W+ SR++ + SILRA EL+ Sbjct: 60 -------RDFGASIVEAYAENADDID-TIVEAASEDWAMSRMNAVDRSILRAAAAELVYV 111 Query: 119 HSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVS 154 + V I E+ +A ++ F+ VL++V+ Sbjct: 112 GTDRFHV-IPEWASLAREYSTERSVGFVMGVLNRVA 146 >gi|87123339|ref|ZP_01079190.1| Antitermination protein NusB [Synechococcus sp. RS9917] gi|86169059|gb|EAQ70315.1| Antitermination protein NusB [Synechococcus sp. RS9917] Length = 219 Score = 81.7 bits (201), Expect = 3e-14, Method: Composition-based stats. Identities = 26/85 (30%), Positives = 41/85 (48%), Gaps = 2/85 (2%) Query: 69 FRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIIS 128 R + V++++ ID + + E W SRL I ILR V++L H P V + Sbjct: 127 ARRRVALVLEQRSAIDARLDGVM-EGWRLSRLPRIDRDILRLAVVDLTALH-TPAAVACN 184 Query: 129 EYVCIAHDFFYGDEPKFINAVLDKV 153 E V +AH + + IN VL ++ Sbjct: 185 EAVELAHRYSDDQGRRMINGVLRRL 209 >gi|160947101|ref|ZP_02094268.1| hypothetical protein PEPMIC_01033 [Parvimonas micra ATCC 33270] gi|158446235|gb|EDP23230.1| hypothetical protein PEPMIC_01033 [Parvimonas micra ATCC 33270] Length = 434 Score = 81.7 bits (201), Expect = 3e-14, Method: Composition-based stats. Identities = 26/121 (21%), Positives = 54/121 (44%), Gaps = 3/121 (2%) Query: 39 EIISEYETYRFCADTELDVESVY-LHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSF 97 EI+ E + + L+ + +D ++ R I++G ++ + ++D +I K Sbjct: 7 EILCEIKDENSNSTNLLNKSTKNISDLDSKFLREIVYGTLENRIYLDYIIKKLC--KLRI 64 Query: 98 SRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKE 157 + + + +ILR + ++I +P II+E V + F F+N L R + Sbjct: 65 KKFNPYILNILRISIYQIIFMDKIPEFAIINEAVNLTKVFKLKKFSSFVNGSLRNFLRNK 124 Query: 158 E 158 E Sbjct: 125 E 125 >gi|312622710|ref|YP_004024323.1| sun protein [Caldicellulosiruptor kronotskyensis 2002] gi|312203177|gb|ADQ46504.1| sun protein [Caldicellulosiruptor kronotskyensis 2002] Length = 431 Score = 81.7 bits (201), Expect = 3e-14, Method: Composition-based stats. Identities = 34/144 (23%), Positives = 57/144 (39%), Gaps = 17/144 (11%) Query: 20 RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79 R AA L++I+ S + + E + + D F ++HGV+ Sbjct: 4 RQAAFFLLFEIEKKKFSGVDSLLEKFHQKLKNEK-----------DRALFVELVHGVLRY 52 Query: 80 KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139 K ID I+ + R+ +ILR EL+ +P ++E IA Sbjct: 53 KNLIDYYINFVAKKGVKDKRI----LNILRVATYELLFLEKIPEYATVNEACEIASKI-N 107 Query: 140 GDEPKFINAVLDKVSR-KEEIKRS 162 F+NA+L + R K +I+ S Sbjct: 108 PHLKAFVNAILRNIIRNKNQIEES 131 >gi|313664987|ref|YP_004046858.1| transcription antitermination factor NusB [Mycoplasma leachii PG50] gi|312949412|gb|ADR24008.1| transcription antitermination factor NusB [Mycoplasma leachii PG50] Length = 132 Score = 81.7 bits (201), Expect = 3e-14, Method: Composition-based stats. Identities = 30/136 (22%), Positives = 59/136 (43%), Gaps = 14/136 (10%) Query: 20 RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79 R +QA Y+ ++ S I + LD + + L + +I ++ Sbjct: 11 RKLLIQAFYKYQLLNASIDYIYQDV----------LDDVQNFNNKKLLFEINLI---AEK 57 Query: 80 KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139 + + I+ ++ W + R+ ++ +IL G E++ P V I+E V + Sbjct: 58 QVDLINHININISLNWKWDRIPAVIRAILIVGTYEILYT-DTPKPVTINEMVNYVKEIEP 116 Query: 140 GDEPKFINAVLDKVSR 155 + KF+NAVLDK+ + Sbjct: 117 DFDYKFVNAVLDKIIK 132 >gi|266624677|ref|ZP_06117612.1| ribosomal RNA small subunit methyltransferase B [Clostridium hathewayi DSM 13479] gi|288863456|gb|EFC95754.1| ribosomal RNA small subunit methyltransferase B [Clostridium hathewayi DSM 13479] Length = 442 Score = 81.7 bits (201), Expect = 4e-14, Method: Composition-based stats. Identities = 22/102 (21%), Positives = 46/102 (45%), Gaps = 6/102 (5%) Query: 59 SVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIEC 118 + + I+ G ++ +D +I+S + K ++ ++ ++LR V +++ Sbjct: 37 QYLDKQERAFISRIVEGTVEYTLQLDYVINSYSSVK--VKKMKPVIRTLLRMSVYQILYM 94 Query: 119 HSVPVEVIISEYVCIA--HDFFYGDEPKFINAVLDKVSRKEE 158 VP + +E V +A F F+N VL +SR +E Sbjct: 95 DRVPDSAVCNEAVKLAQKRKFTGLK--GFVNGVLRGISRNKE 134 >gi|227824651|ref|ZP_03989483.1| SUN protein [Acidaminococcus sp. D21] gi|226905150|gb|EEH91068.1| SUN protein [Acidaminococcus sp. D21] Length = 445 Score = 81.7 bits (201), Expect = 4e-14, Method: Composition-based stats. Identities = 25/138 (18%), Positives = 54/138 (39%), Gaps = 13/138 (9%) Query: 20 RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79 R A+ L + I E Y A + + +D + +++G + Sbjct: 8 RELALLVL-----------DEIYERGAYANLALNKALRGNGLSSLDRKLCTELVYGTVKT 56 Query: 80 KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139 +D + + F ++ L +ILR G +++ +P ++E +A + Sbjct: 57 TGTLDWYLCRVINR--PFRKMAPRLRTILRMGAYQILYLERIPDSAAVNECANLARYYVN 114 Query: 140 GDEPKFINAVLDKVSRKE 157 + K +N VL ++SR + Sbjct: 115 ENSVKLVNGVLRQLSRTK 132 >gi|154685990|ref|YP_001421151.1| RsmB [Bacillus amyloliquefaciens FZB42] gi|154351841|gb|ABS73920.1| RsmB [Bacillus amyloliquefaciens FZB42] Length = 447 Score = 81.3 bits (200), Expect = 4e-14, Method: Composition-based stats. Identities = 24/142 (16%), Positives = 49/142 (34%), Gaps = 24/142 (16%) Query: 20 RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79 R A++AL E + + + Y T + + D +++G + Sbjct: 7 RELALEAL-----------EKLEQNQAYSNLLLTSVIKTNTLSDQDRGLLTELVYGTLQN 55 Query: 80 KQHIDLLISSCL-----TEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134 K +D ++ + + W +LR ++ +P I E V IA Sbjct: 56 KIALDYMLKPFIRKPNKVKSWVIQ--------LLRLSAYQMEYLEKIPDRAAIHEAVEIA 107 Query: 135 HDFFYGDEPKFINAVLDKVSRK 156 + F+N +L + R+ Sbjct: 108 KKRGHKGIASFVNGILRSLQRE 129 >gi|240147074|ref|ZP_04745675.1| ribosomal RNA small subunit methyltransferase B [Roseburia intestinalis L1-82] gi|257200759|gb|EEU99043.1| ribosomal RNA small subunit methyltransferase B [Roseburia intestinalis L1-82] Length = 446 Score = 81.3 bits (200), Expect = 4e-14, Method: Composition-based stats. Identities = 25/137 (18%), Positives = 51/137 (37%), Gaps = 12/137 (8%) Query: 20 RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79 R A+ L ++ G + +++ L+ + + ++ G + Sbjct: 8 RRLALDVLLEVTEHGAYSNQVLR----------AVLEKYQYMEKYERAFLTRLVEGTIQH 57 Query: 80 KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139 +D +I K ++ +ILR GV ++ SVP +E V +A + Sbjct: 58 MIELDYVIDQFSKVKVKKM--KPVIRNILRMGVYQIQYMDSVPDSAACNEAVKLARKSGF 115 Query: 140 GDEPKFINAVLDKVSRK 156 F+N VL ++R Sbjct: 116 STLSGFVNGVLRNIARN 132 >gi|309775471|ref|ZP_07670473.1| N utilization substance protein B [Erysipelotrichaceae bacterium 3_1_53] gi|308916767|gb|EFP62505.1| N utilization substance protein B [Erysipelotrichaceae bacterium 3_1_53] Length = 81 Score = 81.3 bits (200), Expect = 4e-14, Method: Composition-based stats. Identities = 25/81 (30%), Positives = 41/81 (50%), Gaps = 2/81 (2%) Query: 73 IHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVC 132 I V R +ID I+ L + W+F RL + +IL EL + + P ++I E V Sbjct: 3 IDAVAYRDVYIDK-INEALRQDWTFDRLGFVEQAILLMAACEL-DLETAPKAIVIDEAVT 60 Query: 133 IAHDFFYGDEPKFINAVLDKV 153 +A + + + IN VLD++ Sbjct: 61 LAKKYCDDETYRLINGVLDRL 81 >gi|261419371|ref|YP_003253053.1| sun protein [Geobacillus sp. Y412MC61] gi|319766186|ref|YP_004131687.1| sun protein [Geobacillus sp. Y412MC52] gi|261375828|gb|ACX78571.1| sun protein [Geobacillus sp. Y412MC61] gi|317111052|gb|ADU93544.1| sun protein [Geobacillus sp. Y412MC52] Length = 444 Score = 81.3 bits (200), Expect = 4e-14, Method: Composition-based stats. Identities = 27/137 (19%), Positives = 50/137 (36%), Gaps = 14/137 (10%) Query: 20 RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79 R A+ L I+ G Y E + D I++G + R Sbjct: 4 RELALDTLLAIEQKG-----------AYSHLQLNEAIQKGRLDGRDAALLTEIVYGTVQR 52 Query: 80 KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139 + +D ++ L + RL+ + +LR + +++ VP + E V IA + Sbjct: 53 RDTLDYYLAPFLRKA---RRLEPWVRVLLRLTLYQMVYLDRVPDRAAVFEAVEIAKRRGH 109 Query: 140 GDEPKFINAVLDKVSRK 156 +N VL + R+ Sbjct: 110 RGIASLVNGVLRAIGRE 126 >gi|257871148|ref|ZP_05650801.1| sun protein [Enterococcus gallinarum EG2] gi|257805312|gb|EEV34134.1| sun protein [Enterococcus gallinarum EG2] Length = 458 Score = 81.3 bits (200), Expect = 5e-14, Method: Composition-based stats. Identities = 29/137 (21%), Positives = 59/137 (43%), Gaps = 14/137 (10%) Query: 20 RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79 R A++AL +I+ G + ++ E D D +++G + R Sbjct: 19 RFVALEALVRIERGGAYSNLLLRELMNQGRLNDK-----------DGRLLTEMVYGTISR 67 Query: 80 KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139 + +D +++ + ++D + S+LR + +++ VP I++E V IA Sbjct: 68 QLLLDYYLANFIKNA---KKVDPWVRSLLRLSLYQMLYLDKVPNHAILNEAVEIAKAKGN 124 Query: 140 GDEPKFINAVLDKVSRK 156 KF+N VL + R+ Sbjct: 125 PGIGKFVNGVLRTIQRE 141 >gi|325290449|ref|YP_004266630.1| sun protein [Syntrophobotulus glycolicus DSM 8271] gi|324965850|gb|ADY56629.1| sun protein [Syntrophobotulus glycolicus DSM 8271] Length = 461 Score = 81.3 bits (200), Expect = 5e-14, Method: Composition-based stats. Identities = 30/141 (21%), Positives = 55/141 (39%), Gaps = 21/141 (14%) Query: 17 GIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGV 76 AR AV+ L +E E + + + D + +++G Sbjct: 14 HNARRTAVRIL------------TRAEKEKAYVNLLLQRQLRELGDSRDRQLAAALVNGT 61 Query: 77 MDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHD 136 + + +D I L S L ++ +ILR G +L+ +P ++E V Sbjct: 62 LKNRLTLDYAIRRHLKT--PMSALPHMVRAILRTGAFQLLYMDRIPAAAAVNEAVKSVKA 119 Query: 137 FFYGDEPKF---INAVLDKVS 154 +EPKF +N+VL +V+ Sbjct: 120 ----EEPKFAGLVNSVLHRVA 136 >gi|291536615|emb|CBL09727.1| ribosomal RNA small subunit methyltransferase RsmB [Roseburia intestinalis M50/1] gi|291541043|emb|CBL14154.1| ribosomal RNA small subunit methyltransferase RsmB [Roseburia intestinalis XB6B4] Length = 446 Score = 81.3 bits (200), Expect = 5e-14, Method: Composition-based stats. Identities = 25/137 (18%), Positives = 51/137 (37%), Gaps = 12/137 (8%) Query: 20 RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79 R A+ L ++ G + +++ L+ + + ++ G + Sbjct: 8 RRLALDVLLEVTEHGAYSNQVLR----------AVLEKYQYMEKYERAFLTRLVEGTIQH 57 Query: 80 KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139 +D +I K ++ +ILR GV ++ SVP +E V +A + Sbjct: 58 MIELDYVIDQFSKVKVKKM--KPVIRNILRMGVYQIQYMDSVPDSAACNEAVKLARKSGF 115 Query: 140 GDEPKFINAVLDKVSRK 156 F+N VL ++R Sbjct: 116 STLSGFVNGVLRNIARN 132 >gi|308173537|ref|YP_003920242.1| RNA-binding protein [Bacillus amyloliquefaciens DSM 7] gi|307606401|emb|CBI42772.1| RNA-binding Sun protein; 16S rRNA m5C967 methyltransferase, S-adenosyl-L-methionine-dependent [Bacillus amyloliquefaciens DSM 7] gi|328553530|gb|AEB24022.1| 16S rRNA methyltransferase B [Bacillus amyloliquefaciens TA208] gi|328911678|gb|AEB63274.1| RNA-binding Sun protein; 16S rRNA m5C967 methyltransferase, S-adenosyl-L-methionine-dependent [Bacillus amyloliquefaciens LL3] Length = 447 Score = 80.9 bits (199), Expect = 5e-14, Method: Composition-based stats. Identities = 23/137 (16%), Positives = 49/137 (35%), Gaps = 14/137 (10%) Query: 20 RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79 R A++AL E + + + Y T + + D +++G + Sbjct: 7 RELALEAL-----------EKLEQNQAYSNLLLTSVIKTNTLSDQDRGLLTELVYGTLQN 55 Query: 80 KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139 K +D ++ + + + +LR ++ +P I E V IA + Sbjct: 56 KIALDYMLKPFIRKPNKVK---PWVIQLLRLSAYQMEYLEKIPDRAAIHEAVEIAKKRGH 112 Query: 140 GDEPKFINAVLDKVSRK 156 F+N +L + R+ Sbjct: 113 KGIASFVNGILRSLQRE 129 >gi|210622413|ref|ZP_03293145.1| hypothetical protein CLOHIR_01093 [Clostridium hiranonis DSM 13275] gi|210154229|gb|EEA85235.1| hypothetical protein CLOHIR_01093 [Clostridium hiranonis DSM 13275] Length = 441 Score = 80.9 bits (199), Expect = 5e-14, Method: Composition-based stats. Identities = 28/140 (20%), Positives = 60/140 (42%), Gaps = 14/140 (10%) Query: 19 ARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMD 78 AR AA + L I+I + I++ +D D +++GV++ Sbjct: 3 AREAAFKILCDIEIEKNYSNMAINKIFKNEKISDK-----------DKGLATELVYGVIE 51 Query: 79 RKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFF 138 ++++D +I+ K ++ + ILR G +++ + ++E V +A + Sbjct: 52 NRKYLDFIINKL--SKIKVKKMSSFVKIILRMGTYQILFLDKIEDHAAVNETVKLASKY- 108 Query: 139 YGDEPKFINAVLDKVSRKEE 158 G F+NA+L R++ Sbjct: 109 DGKSKGFVNAILRNEIRQKR 128 >gi|297530652|ref|YP_003671927.1| sun protein [Geobacillus sp. C56-T3] gi|297253904|gb|ADI27350.1| sun protein [Geobacillus sp. C56-T3] Length = 444 Score = 80.9 bits (199), Expect = 5e-14, Method: Composition-based stats. Identities = 27/137 (19%), Positives = 50/137 (36%), Gaps = 14/137 (10%) Query: 20 RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79 R A+ L I+ G Y E + D I++G + R Sbjct: 4 RELALDTLLAIEQKG-----------AYSHLQLNEAIQKGRLDGRDAALLTEIVYGTVQR 52 Query: 80 KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139 + +D ++ L + RL+ + +LR + +++ VP + E V IA + Sbjct: 53 RDTLDYYLAPFLRKA---RRLEPWVRVLLRLTLYQMVYLDRVPDRAAVFEAVEIAKRRGH 109 Query: 140 GDEPKFINAVLDKVSRK 156 +N VL + R+ Sbjct: 110 RGIASLVNGVLRAIGRE 126 >gi|225028095|ref|ZP_03717287.1| hypothetical protein EUBHAL_02365 [Eubacterium hallii DSM 3353] gi|224954565|gb|EEG35774.1| hypothetical protein EUBHAL_02365 [Eubacterium hallii DSM 3353] Length = 466 Score = 80.9 bits (199), Expect = 5e-14, Method: Composition-based stats. Identities = 32/157 (20%), Positives = 62/157 (39%), Gaps = 14/157 (8%) Query: 2 TIQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVY 61 T Q +K++++ +R R A+ L +I + L Sbjct: 6 TKQTRRKEMQM-EKRTDMRAEALDTL----------IDIERNKKLSHIAIGETLMRNQFE 54 Query: 62 LHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSV 121 D ++ + GV +RK ++D ++ K + ++ S+LR G +++ V Sbjct: 55 KKADRAFYTRLCEGVTERKIYLDYILDHY--SKTPMKKCKPLIRSLLRMGAYQILFM-DV 111 Query: 122 PVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEE 158 SE V +A +G F+N VL + R++E Sbjct: 112 RDAAACSEAVSLAKKRGFGRLSGFVNGVLRTLVREKE 148 >gi|315640285|ref|ZP_07895402.1| RNA methyltransferase Sun [Enterococcus italicus DSM 15952] gi|315483947|gb|EFU74426.1| RNA methyltransferase Sun [Enterococcus italicus DSM 15952] Length = 449 Score = 80.9 bits (199), Expect = 5e-14, Method: Composition-based stats. Identities = 25/120 (20%), Positives = 46/120 (38%), Gaps = 3/120 (2%) Query: 36 STTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKW 95 + E + + Y A E + D +++G + + +D ++ L + Sbjct: 15 TLLERVDKGGAYSNLAIKEAIATTQLNEKDARLLTELVYGTIGNQLRLDYYLAPFLKKAK 74 Query: 96 SFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSR 155 R + +LR V +L VP I +E V IA +F+N VL ++ R Sbjct: 75 KVDRWVKV---LLRMSVYQLHFLDKVPSHAIFNEAVEIAKYRGNVGVGQFVNGVLRQLQR 131 >gi|239626556|ref|ZP_04669587.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA] gi|239516702|gb|EEQ56568.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA] Length = 447 Score = 80.9 bits (199), Expect = 5e-14, Method: Composition-based stats. Identities = 23/123 (18%), Positives = 50/123 (40%), Gaps = 6/123 (4%) Query: 37 TTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWS 96 +E++ + + L D + + G ++ ID +I+ K Sbjct: 20 LSEVLDKGSFVHLVLNQALQKYQYLDKSDRAFITRVTEGTLEYLLQIDHIINKYSRTK-- 77 Query: 97 FSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA--HDFFYGDEPKFINAVLDKVS 154 ++ ++ ++LR V +++ VP + +E V +A F F+N VL +S Sbjct: 78 TDKMKPLIRNLLRMSVYQILYMDRVPDSAVCNEAVKLAVKRRFTGLK--GFVNGVLRTIS 135 Query: 155 RKE 157 R++ Sbjct: 136 REK 138 >gi|291515762|emb|CBK64972.1| Transcription termination factor [Alistipes shahii WAL 8301] Length = 311 Score = 80.9 bits (199), Expect = 5e-14, Method: Composition-based stats. Identities = 27/129 (20%), Positives = 47/129 (36%), Gaps = 5/129 (3%) Query: 40 IISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSR 99 ++ R D E+ + + + I T W R Sbjct: 181 VLRTLSNLRVSHTELKVPAKFKSSEDPEFVKTLFEKSLVNYSAFQDYIEKF-TANWDVER 239 Query: 100 LDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSR---- 155 + + I+ + EL SVPV+V + E++ I+ + FIN VLDK+ Sbjct: 240 IVFMDNLIIGTAMAELTSFPSVPVKVTLDEWIEISKYYSTPGSSTFINGVLDKIVESLTA 299 Query: 156 KEEIKRSGC 164 + IK++G Sbjct: 300 EGRIKKAGR 308 >gi|288553113|ref|YP_003425048.1| rRNA SAM-dependent methyltransferase RmsB [Bacillus pseudofirmus OF4] gi|288544273|gb|ADC48156.1| rRNA SAM-dependent methyltransferase RmsB [Bacillus pseudofirmus OF4] Length = 448 Score = 80.9 bits (199), Expect = 6e-14, Method: Composition-based stats. Identities = 25/137 (18%), Positives = 56/137 (40%), Gaps = 13/137 (9%) Query: 20 RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79 R AV L QI+ + ++++ +S D+ +++G + R Sbjct: 6 REVAVDVLLQIEKNQAYSNLLLNQTIN-----------KSKLDRRDIGLLTELVYGTIQR 54 Query: 80 KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139 + +D ++ + + +L+ + +LR V +L+ +P ++ E V IA + Sbjct: 55 RDTLDYFLAPFVKKG--IDKLEDWVKVLLRLSVYQLVYLDRIPDRAVVHEAVTIAKKRGH 112 Query: 140 GDEPKFINAVLDKVSRK 156 +N VL + R+ Sbjct: 113 KGISGMVNGVLRSIGRE 129 >gi|187778898|ref|ZP_02995371.1| hypothetical protein CLOSPO_02493 [Clostridium sporogenes ATCC 15579] gi|187772523|gb|EDU36325.1| hypothetical protein CLOSPO_02493 [Clostridium sporogenes ATCC 15579] Length = 442 Score = 80.9 bits (199), Expect = 6e-14, Method: Composition-based stats. Identities = 27/143 (18%), Positives = 55/143 (38%), Gaps = 14/143 (9%) Query: 19 ARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMD 78 AR A+ L + G + ++++ D D I++G + Sbjct: 4 AREVALDVLKAVLYEGAYSNIVLNKKLNKSNLKDN-----------DKALITEIVYGTLK 52 Query: 79 RKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFF 138 K+ +D++I S L +D + +ILR + ++ +P ++E V ++ Sbjct: 53 YKETLDIIIQSYLKN--PIKTMDKNIANILRITIYQIRYLDKIPSFAAVNEAVEMSKKIS 110 Query: 139 YGDEPKFINAVLDKVSRKEEIKR 161 K +N VL R + K+ Sbjct: 111 IKYS-KLVNGVLRNYIRTYKNKK 132 >gi|331703119|ref|YP_004399806.1| transcription termination factor NusB [Mycoplasma mycoides subsp. capri LC str. 95010] gi|328801674|emb|CBW53827.1| Transcription termination factor NusB [Mycoplasma mycoides subsp. capri LC str. 95010] Length = 132 Score = 80.9 bits (199), Expect = 6e-14, Method: Composition-based stats. Identities = 28/136 (20%), Positives = 58/136 (42%), Gaps = 14/136 (10%) Query: 20 RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79 R +Q Y+ ++ + I + LD + D+ + I + + Sbjct: 11 RKLLIQTFYKYQLLNSNIDYIHQDI----------LDDVQNINNKDVLFE---IEQIAKK 57 Query: 80 KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139 + + I++ ++ W + R+ ++ +IL G E++ P V I+E V + Sbjct: 58 QTDLINHINTNVSSSWKWDRIPAVIRAILIVGTYEILYT-DTPKPVTINEMVKYVKEIEP 116 Query: 140 GDEPKFINAVLDKVSR 155 + KF+NAVLDK+ + Sbjct: 117 DFDYKFVNAVLDKLVK 132 >gi|56419708|ref|YP_147026.1| RNA-binding Sun protein [Geobacillus kaustophilus HTA426] gi|56379550|dbj|BAD75458.1| RNA-binding Sun protein [Geobacillus kaustophilus HTA426] Length = 444 Score = 80.9 bits (199), Expect = 6e-14, Method: Composition-based stats. Identities = 27/137 (19%), Positives = 50/137 (36%), Gaps = 14/137 (10%) Query: 20 RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79 R A+ L I+ G Y E + D I++G + R Sbjct: 4 RELALDTLLAIEQKG-----------AYSHLQLNEAIQKGRLDGRDAALLTEIVYGTVQR 52 Query: 80 KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139 + +D ++ L + RL+ + +LR + +++ VP + E V IA + Sbjct: 53 RDTLDYYLAPFLRKA---RRLEPWVRVLLRLTLYQMVYLDRVPDRAAVFEAVEIAKRRGH 109 Query: 140 GDEPKFINAVLDKVSRK 156 +N VL + R+ Sbjct: 110 RGIASLVNGVLRAIGRE 126 >gi|153855357|ref|ZP_01996506.1| hypothetical protein DORLON_02520 [Dorea longicatena DSM 13814] gi|149752177|gb|EDM62108.1| hypothetical protein DORLON_02520 [Dorea longicatena DSM 13814] Length = 436 Score = 80.9 bits (199), Expect = 6e-14, Method: Composition-based stats. Identities = 32/139 (23%), Positives = 59/139 (42%), Gaps = 12/139 (8%) Query: 20 RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79 R + L QI G + +I LD + + +++G ++R Sbjct: 8 RELVLDMLLQITRDGEYSHIVIK----------NVLDKYQYLDKRERAFITRVVNGTLER 57 Query: 80 KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139 ID +I L K +++ ++ +ILR+ V ++ SVP I +E V +A + Sbjct: 58 MIEIDYII--NLFSKVKVNKMKQLIRTILRSSVYQMKYMDSVPDSAICNEAVKLAGKRGF 115 Query: 140 GDEPKFINAVLDKVSRKEE 158 + F+N VL +SR + Sbjct: 116 VNLKGFVNGVLRNISRNLD 134 >gi|33860569|ref|NP_892130.1| transcription antitermination protein NusB [Prochlorococcus marinus subsp. pastoris str. CCMP1986] gi|33633511|emb|CAE18468.1| Antitermination protein NusB [Prochlorococcus marinus subsp. pastoris str. CCMP1986] Length = 209 Score = 80.9 bits (199), Expect = 6e-14, Method: Composition-based stats. Identities = 22/80 (27%), Positives = 33/80 (41%), Gaps = 2/80 (2%) Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135 +++ + ID I + W RL + ILR I PV V E V +A+ Sbjct: 128 IINNLKSIDSEIDEVMDR-WRLKRLPRVDRDILRLA-YVDIHFLDTPVAVACDEAVNLAN 185 Query: 136 DFFYGDEPKFINAVLDKVSR 155 + K IN VL ++ R Sbjct: 186 KYCDTQGRKMINGVLRRLQR 205 >gi|320528399|ref|ZP_08029561.1| putative transcription antitermination factor NusB [Solobacterium moorei F0204] gi|320131313|gb|EFW23881.1| putative transcription antitermination factor NusB [Solobacterium moorei F0204] Length = 150 Score = 80.9 bits (199), Expect = 6e-14, Method: Composition-based stats. Identities = 34/139 (24%), Positives = 58/139 (41%), Gaps = 14/139 (10%) Query: 15 RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74 R R A+ +YQ I+ +I++ ++E+D +F +I Sbjct: 26 NRHDQRENAMITVYQYLIVQRDIHALIND---VFKVDESEID----------PYFIDVIK 72 Query: 75 GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134 + + I S L + WS+ RL +I +IL G E + VII + V +A Sbjct: 73 TSIANEDRYREYIDSVLKKGWSYERLGLIEKAILLNGCAEF-DLKKTESAVIIDQSVQLA 131 Query: 135 HDFFYGDEPKFINAVLDKV 153 + D K +N+VLD + Sbjct: 132 KRYCDSDTYKLVNSVLDVI 150 >gi|15615070|ref|NP_243373.1| hypothetical protein BH2507 [Bacillus halodurans C-125] gi|10175127|dbj|BAB06226.1| BH2507 [Bacillus halodurans C-125] Length = 450 Score = 80.9 bits (199), Expect = 6e-14, Method: Composition-based stats. Identities = 28/137 (20%), Positives = 59/137 (43%), Gaps = 13/137 (9%) Query: 20 RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79 R A++ L QI+ + ++++ ++ D+ +++G + R Sbjct: 7 REVALETLVQIEKSQAYSNLLLNQKIK-----------QANLEPRDIGLLTELVYGTVQR 55 Query: 80 KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139 ++ +D I+S + + +L+ + +LR V +L+ VP II E V IA + Sbjct: 56 QKTLDYYIASFVAKGKR--KLEDWVRILLRLSVYQLVYLDKVPPHAIIHEAVNIAKKRGH 113 Query: 140 GDEPKFINAVLDKVSRK 156 +N VL + R+ Sbjct: 114 KGISGLVNGVLRSMQRQ 130 >gi|123965243|ref|YP_001010324.1| transcription antitermination protein NusB [Prochlorococcus marinus str. MIT 9515] gi|123199609|gb|ABM71217.1| Antitermination protein NusB [Prochlorococcus marinus str. MIT 9515] Length = 208 Score = 80.5 bits (198), Expect = 6e-14, Method: Composition-based stats. Identities = 24/83 (28%), Positives = 34/83 (40%), Gaps = 2/83 (2%) Query: 73 IHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVC 132 I ++D Q ID I + W RL I ILR I P+ V E V Sbjct: 124 IKSIIDNLQTIDSEIDEVMD-GWRLKRLPRIDRDILRLA-YIDIHLLDTPIAVACDEAVN 181 Query: 133 IAHDFFYGDEPKFINAVLDKVSR 155 +A+ + K IN VL ++ + Sbjct: 182 LANKYSDTQGRKMINGVLRRLQK 204 >gi|148262276|ref|YP_001228982.1| sun protein [Geobacter uraniireducens Rf4] gi|146395776|gb|ABQ24409.1| sun protein [Geobacter uraniireducens Rf4] Length = 448 Score = 80.5 bits (198), Expect = 6e-14, Method: Composition-based stats. Identities = 31/123 (25%), Positives = 55/123 (44%), Gaps = 6/123 (4%) Query: 39 EIISEYETYRFCADTELDVE---SVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKW 95 EI+ + R AD +D E D +++GV+ R+ +D +I+ +K Sbjct: 12 EILLRIDKERSYADILIDRELSSGFLQGPDRGLLTELVYGVLRRQGTLDYIINRFSKQK- 70 Query: 96 SFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSR 155 RL+ + +LR G+ ++ VPV ++E V +A F+NAVL R Sbjct: 71 -SERLERSVLVLLRIGLYQIFYLDRVPVSAAVNETVKLAKVL-APRASGFVNAVLRSADR 128 Query: 156 KEE 158 + + Sbjct: 129 ERD 131 >gi|50365148|ref|YP_053573.1| transcription termination factor [Mesoplasma florum L1] gi|50363704|gb|AAT75689.1| transcription termination factor [Mesoplasma florum L1] Length = 134 Score = 80.5 bits (198), Expect = 7e-14, Method: Composition-based stats. Identities = 35/150 (23%), Positives = 62/150 (41%), Gaps = 18/150 (12%) Query: 6 NKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVD 65 +++ L ++ RR VQ Y+ ++ I + +LDVE+ Sbjct: 2 SEQKLSMTKRRT----YLVQMFYRYLLMNNDVNYIKQDILDE---TQEKLDVETTL---- 50 Query: 66 LEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEV 125 I + + ++ + I L+ W + R+ + SIL G E+I P V Sbjct: 51 ------IANNIAEKLSDLKKEIIKHLSANWKWERIPTYIQSILIIGAYEIIFTP-TPKAV 103 Query: 126 IISEYVCIAHDFFYGDEPKFINAVLDKVSR 155 I+E V + + + KF+NA LDKV + Sbjct: 104 TINELVNLVKENEVDFDYKFVNACLDKVIK 133 >gi|118581643|ref|YP_902893.1| sun protein [Pelobacter propionicus DSM 2379] gi|118504353|gb|ABL00836.1| sun protein [Pelobacter propionicus DSM 2379] Length = 452 Score = 80.5 bits (198), Expect = 7e-14, Method: Composition-based stats. Identities = 35/144 (24%), Positives = 62/144 (43%), Gaps = 14/144 (9%) Query: 15 RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74 +R R +A L +I GC +++ D EL+ D F ++ Sbjct: 7 KRSNPRQSACSVLLRIQREGCYADQLM----------DRELE-SGGLTGPDRGLFAELVF 55 Query: 75 GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134 G + R+ +D ++SS LT+ SRL+ +LR G+ +L+ +P ++E V +A Sbjct: 56 GALRRQGTLDHILSSLLTQ--PLSRLEPQALILLRVGLYQLVYLDRIPESAAVNESVNLA 113 Query: 135 HDFFYGDEPKFINAVLDKVSRKEE 158 +NAVL R+ + Sbjct: 114 KK-TLPRASGLVNAVLRNYLRRGD 136 >gi|193212287|ref|YP_001998240.1| sun protein [Chlorobaculum parvum NCIB 8327] gi|193085764|gb|ACF11040.1| sun protein [Chlorobaculum parvum NCIB 8327] Length = 428 Score = 80.5 bits (198), Expect = 7e-14, Method: Composition-based stats. Identities = 31/138 (22%), Positives = 55/138 (39%), Gaps = 14/138 (10%) Query: 18 IARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVM 77 AR A++ L ID+ G +E + R + D R ++ G + Sbjct: 2 TAREIALRVL--IDLDGMKKSEELLNRMLERSSLERN----------DRALARELVAGTL 49 Query: 78 DRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDF 137 + D +I +++ +L ILR GV +L+ VP ++E V +A F Sbjct: 50 KYRLQCDFVIERFYRH--DYAKAAEVLKHILRLGVYQLLHLDRVPRSAAVNESVKLARKF 107 Query: 138 FYGDEPKFINAVLDKVSR 155 K +N +L +S+ Sbjct: 108 KGEHLAKLVNGLLRNLSK 125 >gi|21673438|ref|NP_661503.1| Sun protein [Chlorobium tepidum TLS] gi|21646540|gb|AAM71845.1| sun protein [Chlorobium tepidum TLS] Length = 428 Score = 80.5 bits (198), Expect = 8e-14, Method: Composition-based stats. Identities = 26/138 (18%), Positives = 57/138 (41%), Gaps = 14/138 (10%) Query: 18 IARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVM 77 AR A++ L ++D + E+++ + + D + ++ G + Sbjct: 2 TARELALRVLLELD-GMRKSEELLNRMHEH-----------AGLGKNDRALAKELVAGTL 49 Query: 78 DRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDF 137 + D +I+ +++ +L ILR GV +L+ VP ++E V +A F Sbjct: 50 KYRLQCDFIIARFYRH--DYAKAATVLKHILRLGVYQLLRLDRVPKSAAVNESVKLARKF 107 Query: 138 FYGDEPKFINAVLDKVSR 155 + +N +L +S+ Sbjct: 108 KGDHLARLVNGLLRNISK 125 >gi|260588062|ref|ZP_05853975.1| ribosomal RNA small subunit methyltransferase B [Blautia hansenii DSM 20583] gi|260541589|gb|EEX22158.1| ribosomal RNA small subunit methyltransferase B [Blautia hansenii DSM 20583] Length = 454 Score = 80.5 bits (198), Expect = 8e-14, Method: Composition-based stats. Identities = 24/118 (20%), Positives = 51/118 (43%), Gaps = 2/118 (1%) Query: 39 EIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFS 98 EI E + + L+ + + + G ++ K +D ++ + Sbjct: 17 EINKEGQHSHLVIRSTLEKYQYLEKQERAFLTRVCEGTLEYKLRLDYILDQYSSV--PVE 74 Query: 99 RLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRK 156 ++ ++ ILR+ V +L+ +VP + E V +A + + F+N VL KV+R+ Sbjct: 75 KMKPVIREILRSSVYQLLYMDNVPDSAVCDEAVKLARKKGFYNLTGFVNGVLRKVARE 132 >gi|301320813|gb|ADK69456.1| transcription antitermination factor NusB [Mycoplasma mycoides subsp. mycoides SC str. Gladysdale] Length = 132 Score = 80.5 bits (198), Expect = 8e-14, Method: Composition-based stats. Identities = 30/136 (22%), Positives = 62/136 (45%), Gaps = 14/136 (10%) Query: 20 RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79 R +QA Y+ +++ S I + LD + D+ + I+ + ++ Sbjct: 11 RKLLIQAFYKYELLNASIDYIHQDI----------LDDVQNIKNKDVLFE---INQISEK 57 Query: 80 KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139 + + I+ ++ W + R+ ++ +IL G E++ + P V I+E V + Sbjct: 58 QTDLINHININISSSWKWDRMPAVIRAILIVGTYEILYT-NTPKSVTINEMVKYVKEIEP 116 Query: 140 GDEPKFINAVLDKVSR 155 + KF+NAVLDK+ + Sbjct: 117 DFDYKFVNAVLDKLVK 132 >gi|28210910|ref|NP_781854.1| 16S rRNA M(5)C 967 methyltransferase [Clostridium tetani E88] gi|28203349|gb|AAO35791.1| 16S rRNA M(5)C 967 methyltransferase [Clostridium tetani E88] Length = 454 Score = 80.5 bits (198), Expect = 8e-14, Method: Composition-based stats. Identities = 29/155 (18%), Positives = 58/155 (37%), Gaps = 18/155 (11%) Query: 6 NKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVD 65 N+++L + R +A + + Y A + D Sbjct: 7 NRRNLYMVTDRKVA---------------IEVLDAVFLKNAYSNIALNNALNKYKLNEKD 51 Query: 66 LEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEV 125 + +++G + + ID +++S + + +D + +ILR G+ +L VP Sbjct: 52 KAFITELVYGTIKYRHTIDTILNSYIKKG--IKSVDKYVLNILRIGIYQLRYLDKVPSFA 109 Query: 126 IISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIK 160 ++E V + G K IN VL R ++ K Sbjct: 110 AVNECVELGKVKSKGTG-KLINGVLRNYIRNKDPK 143 >gi|172035456|ref|YP_001801957.1| Fmu, rRNA SAM-dependent methyltransferase [Cyanothece sp. ATCC 51142] gi|171696910|gb|ACB49891.1| Fmu, rRNA SAM-dependent methyltransferase [Cyanothece sp. ATCC 51142] Length = 452 Score = 80.5 bits (198), Expect = 8e-14, Method: Composition-based stats. Identities = 28/149 (18%), Positives = 57/149 (38%), Gaps = 13/149 (8%) Query: 10 LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF 69 ++ + ++ AR + L QID T + R T L+ D Sbjct: 1 MQPTTKKTNARQLTLDILRQIDRKNSYTDIALD-----RAFNQTHLNPS------DRSLC 49 Query: 70 RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISE 129 +++G++ ++ +D LI +K L IL G+ +L ++P ++ Sbjct: 50 TELVYGIIRHQRTLDTLIDQLGKKKAKQQ--PPDLRRILHIGLYQLRYLDNIPPSAAVNT 107 Query: 130 YVCIAHDFFYGDEPKFINAVLDKVSRKEE 158 V +A ++ +N +L + R E Sbjct: 108 SVNLAKEYKLNRLSGVVNGILRQYLRSSE 136 >gi|118444654|ref|YP_878315.1| sun protein [Clostridium novyi NT] gi|118135110|gb|ABK62154.1| sun protein [Clostridium novyi NT] Length = 443 Score = 80.1 bits (197), Expect = 9e-14, Method: Composition-based stats. Identities = 26/125 (20%), Positives = 48/125 (38%), Gaps = 2/125 (1%) Query: 36 STTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKW 95 E++ Y + ++ D I++G + K ID ++++ L + Sbjct: 10 DILEVVFNKNAYSNIVLRQTLNKNKIDDKDKGLITEIVYGTIKYKYTIDTILNNFLKKG- 68 Query: 96 SFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSR 155 LD + +ILR V ++ +P ++E V IA K +N VL R Sbjct: 69 -IKSLDSYVLNILRITVYQIKFLDKIPNFAAVNEAVEIAKKEKSVGASKLVNGVLRNYLR 127 Query: 156 KEEIK 160 + K Sbjct: 128 NLDKK 132 >gi|108799351|ref|YP_639548.1| Fmu (Sun) [Mycobacterium sp. MCS] gi|119868467|ref|YP_938419.1| Fmu (Sun) domain-containing protein [Mycobacterium sp. KMS] gi|108769770|gb|ABG08492.1| Fmu (Sun) [Mycobacterium sp. MCS] gi|119694556|gb|ABL91629.1| Fmu (Sun) domain protein [Mycobacterium sp. KMS] Length = 455 Score = 80.1 bits (197), Expect = 9e-14, Method: Composition-based stats. Identities = 33/168 (19%), Positives = 57/168 (33%), Gaps = 18/168 (10%) Query: 6 NKKDLKLSHRRGI----ARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVY 61 + + R AR A L +SE + Y A L E Sbjct: 2 TRPPHRPQRNRRKPLDPARRVAFDVL-----------RAVSERDAYANLALPALLNERGL 50 Query: 62 LHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSV 121 D + + +G + +D +I + R+D +L +LR G +L+ V Sbjct: 51 DGRDAAFATELTYGTCRSRGLLDAVIEAA--AGRPVDRIDPVLLDLLRLGTYQLL-RTRV 107 Query: 122 PVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRSGCVSAIT 169 +S V A F F+N VL K++ ++E ++ Sbjct: 108 EPHAAVSTTVEQAGIEFDTARAGFVNGVLRKIAGRDEQSWVAELAPPA 155 >gi|332685780|ref|YP_004455554.1| ribosomal RNA small subunit methyltransferase B [Melissococcus plutonius ATCC 35311] gi|332369789|dbj|BAK20745.1| ribosomal RNA small subunit methyltransferase B [Melissococcus plutonius ATCC 35311] Length = 453 Score = 80.1 bits (197), Expect = 9e-14, Method: Composition-based stats. Identities = 32/152 (21%), Positives = 61/152 (40%), Gaps = 22/152 (14%) Query: 10 LKLSHR--RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLE 67 +K +++ + R AA+QA+ E I + Y E+ S D Sbjct: 1 MKNTNKNIKSSVRDAALQAI-----------ERIDKGGAYSNLLLNEMIQSSQLGEKDSR 49 Query: 68 WFRVIIHGVMDRKQHIDLLISSCLTEKWSFS---RLDMILCSILRAGVLELIECHSVPVE 124 F I++G + RK ++ + + + ++ R+ +L +L+ VP Sbjct: 50 LFTEIVYGTISRKLLLEYYLDTFIHKRKKVEHWVRM------LLILSFYQLLYLDKVPDH 103 Query: 125 VIISEYVCIAHDFFYGDEPKFINAVLDKVSRK 156 +I+E V IA KF+N +L + R+ Sbjct: 104 AVINEAVEIAKRRGNLGTGKFVNGILRSLQRR 135 >gi|126435009|ref|YP_001070700.1| Fmu (Sun) domain-containing protein [Mycobacterium sp. JLS] gi|126234809|gb|ABN98209.1| Fmu (Sun) domain protein [Mycobacterium sp. JLS] Length = 455 Score = 80.1 bits (197), Expect = 9e-14, Method: Composition-based stats. Identities = 33/168 (19%), Positives = 57/168 (33%), Gaps = 18/168 (10%) Query: 6 NKKDLKLSHRRGI----ARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVY 61 + + R AR A L +SE + Y A L E Sbjct: 2 TRPPHRPQRNRRKPLDPARRVAFDVL-----------RAVSERDAYANLALPALLNERGL 50 Query: 62 LHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSV 121 D + + +G + +D +I + R+D +L +LR G +L+ V Sbjct: 51 DGRDAAFATELTYGTCRSRGLLDAVIEAA--AGRPVDRIDPVLLDLLRLGTYQLL-RTRV 107 Query: 122 PVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRSGCVSAIT 169 +S V A F F+N VL K++ ++E ++ Sbjct: 108 EPHAAVSTTVEQAGIEFDTARAGFVNGVLRKIAGRDEQSWVAELAPPA 155 >gi|157692254|ref|YP_001486716.1| rRNA SAM-dependent methyltransferase RmsB [Bacillus pumilus SAFR-032] gi|157681012|gb|ABV62156.1| rRNA SAM-dependent methyltransferase RmsB [Bacillus pumilus SAFR-032] Length = 447 Score = 80.1 bits (197), Expect = 9e-14, Method: Composition-based stats. Identities = 21/142 (14%), Positives = 54/142 (38%), Gaps = 14/142 (9%) Query: 15 RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74 ++ R A+ AL +++ + ++ + AD D +++ Sbjct: 2 KKSNVREVALDALIKLEQNQAYSNLLLQSVMKDKDLADQ-----------DKPLLTELVY 50 Query: 75 GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134 G + K +D +++ + + ++ + +LR + +++ +P I E V + Sbjct: 51 GTLQNKLALDYMLAPFVKK---PQKVAPWVMQLLRMSLYQMVYLEKIPDRAAIHEAVELT 107 Query: 135 HDFFYGDEPKFINAVLDKVSRK 156 + +N VL V R+ Sbjct: 108 KKRGHKGISSLVNGVLRSVQRE 129 >gi|223986295|ref|ZP_03636307.1| hypothetical protein HOLDEFILI_03617 [Holdemania filiformis DSM 12042] gi|223961734|gb|EEF66234.1| hypothetical protein HOLDEFILI_03617 [Holdemania filiformis DSM 12042] Length = 115 Score = 80.1 bits (197), Expect = 1e-13, Method: Composition-based stats. Identities = 35/127 (27%), Positives = 57/127 (44%), Gaps = 15/127 (11%) Query: 27 LYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLL 86 LYQ ++ EII E + ELD ++ R++I +D + Sbjct: 4 LYQHRLLNKPMDEIIEEVMEMKTG---ELD----------DFSRILILDTLDNENRYIQY 50 Query: 87 ISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFI 146 I+ L + WSF RL ++ +IL EL + +II E V +A D+ + + I Sbjct: 51 INETL-KDWSFERLGVLEQAILLMACSELDH-QTASAAIIIDEAVRLAKDYCDDEAYRLI 108 Query: 147 NAVLDKV 153 N VLD++ Sbjct: 109 NGVLDRI 115 >gi|237756907|ref|ZP_04585380.1| transcription termination factor [Sulfurihydrogenibium yellowstonense SS-5] gi|237690928|gb|EEP60063.1| transcription termination factor [Sulfurihydrogenibium yellowstonense SS-5] Length = 169 Score = 80.1 bits (197), Expect = 1e-13, Method: Composition-based stats. Identities = 32/169 (18%), Positives = 68/169 (40%), Gaps = 24/169 (14%) Query: 14 HRR--GIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71 +R AR +++ L+ D ++ E+ + + E+ Sbjct: 13 RKRLLKAARDLSMRVLFAYDFRKEDLFNVLEEFLNTK-----------KFPSEIKEYVLK 61 Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELI---------ECHSVP 122 +I+ + Q +D +I S L + W F R+ I ++LR GV EL+ E Sbjct: 62 VINFYNENSQEVDDIIKSHL-KNWRFERIGYIERAVLRLGVSELLIIHSKEESKELKDKE 120 Query: 123 VEVIISEYVCIAHDFFYGD-EPKFINAVLDKVSRKEEIKRSGCVSAITQ 170 + ++ + + + + KF+N +L K++++ E + +TQ Sbjct: 121 IRILFLDLLDLVECYTNSKLSVKFVNGILGKINKELEQNENSIHIGLTQ 169 >gi|295094725|emb|CBK83816.1| ribosomal RNA small subunit methyltransferase RsmB [Coprococcus sp. ART55/1] Length = 445 Score = 79.8 bits (196), Expect = 1e-13, Method: Composition-based stats. Identities = 26/128 (20%), Positives = 53/128 (41%), Gaps = 2/128 (1%) Query: 31 DIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSC 90 +++ + +I + T L D + ++ GV +++ +D +I+ Sbjct: 7 EVVLTTLLDIEKNHTFSNIALGTALRANQFMSKQDRAYITRMVEGVTEQRIKLDYIINQF 66 Query: 91 LTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVL 150 K ++ ++ +LR G EL SVP + V +A D +G F+N VL Sbjct: 67 SKTK--VNKCKPLIRCVLRMGTYELFFMDSVPDSAACNLSVKLAVDHGFGSLRGFVNGVL 124 Query: 151 DKVSRKEE 158 ++R + Sbjct: 125 RNIARNRD 132 >gi|168182584|ref|ZP_02617248.1| ribosomal RNA small subunit methyltransferase B [Clostridium botulinum Bf] gi|182674127|gb|EDT86088.1| ribosomal RNA small subunit methyltransferase B [Clostridium botulinum Bf] Length = 442 Score = 79.8 bits (196), Expect = 1e-13, Method: Composition-based stats. Identities = 27/143 (18%), Positives = 54/143 (37%), Gaps = 14/143 (9%) Query: 19 ARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMD 78 AR A+ L + + ++S+ D D I++G + Sbjct: 4 AREVALDVLKAVLFESAYSNIVLSKKLNKSNLKDN-----------DKALITEIVYGTLK 52 Query: 79 RKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFF 138 K+ +D++I S L +D + +ILR + ++ +P ++E V ++ Sbjct: 53 YKETLDIIIQSYLRN--PIKTMDKNIINILRITIYQIRYLDKIPSFAAVNEAVEMSKKIS 110 Query: 139 YGDEPKFINAVLDKVSRKEEIKR 161 K +N VL R + K+ Sbjct: 111 IKYS-KLVNGVLRNYIRTYKNKK 132 >gi|42560661|ref|NP_975112.1| transcription termination factor nusB [Mycoplasma mycoides subsp. mycoides SC str. PG1] gi|42492157|emb|CAE76754.1| transcription termination factor nusB [Mycoplasma mycoides subsp. mycoides SC str. PG1] Length = 132 Score = 79.8 bits (196), Expect = 1e-13, Method: Composition-based stats. Identities = 30/136 (22%), Positives = 62/136 (45%), Gaps = 14/136 (10%) Query: 20 RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79 R +QA Y+ +++ S I + LD + D+ + I+ + ++ Sbjct: 11 RKLLIQAFYKYELLNASIDYIHQDI----------LDDVQNIKNKDVLFE---INQISEK 57 Query: 80 KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139 + + I+ ++ W + R+ ++ +IL G E++ + P V I+E V + Sbjct: 58 QTDLINHININISSSWKWDRIPAVIRAILIVGTYEILYT-NTPKSVTINEMVKYVKEIEP 116 Query: 140 GDEPKFINAVLDKVSR 155 + KF+NAVLDK+ + Sbjct: 117 DFDYKFVNAVLDKLVK 132 >gi|116074285|ref|ZP_01471547.1| transcription antitermination protein NusB [Synechococcus sp. RS9916] gi|116069590|gb|EAU75342.1| transcription antitermination protein NusB [Synechococcus sp. RS9916] Length = 213 Score = 79.8 bits (196), Expect = 1e-13, Method: Composition-based stats. Identities = 23/78 (29%), Positives = 37/78 (47%), Gaps = 2/78 (2%) Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135 VM+++ ID + + E W SRL I ILR V++ P V +E V +A+ Sbjct: 127 VMEQRSSIDARLDGVM-EGWRLSRLPRIDRDILRLAVVDFT-SLKTPSAVACNEAVELAN 184 Query: 136 DFFYGDEPKFINAVLDKV 153 + + IN VL ++ Sbjct: 185 RYSDDQGRRMINGVLRRL 202 >gi|71083732|ref|YP_266452.1| antitermination protein NusB [Candidatus Pelagibacter ubique HTCC1062] gi|71062845|gb|AAZ21848.1| Antitermination protein NusB [Candidatus Pelagibacter ubique HTCC1062] Length = 134 Score = 79.8 bits (196), Expect = 1e-13, Method: Composition-based stats. Identities = 28/117 (23%), Positives = 59/117 (50%), Gaps = 3/117 (2%) Query: 40 IISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSR 99 II + F DT+L ++ + ++ G ++R + I + L+E + Sbjct: 15 IIQKLYGNFFNDDTDLTFPKHRFK---KFIKDVVLGTIERDEVIKEEVKKYLSEDLELTN 71 Query: 100 LDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRK 156 LD + I+++ + E + V ++II EY+ ++ F + K++NA+LDK+++K Sbjct: 72 LDQVFQVIVKSAIFEFLYKPKVSSKIIIKEYLDASNFFLEDGQTKYLNAILDKIAKK 128 >gi|332981565|ref|YP_004463006.1| sun protein [Mahella australiensis 50-1 BON] gi|332699243|gb|AEE96184.1| sun protein [Mahella australiensis 50-1 BON] Length = 447 Score = 79.8 bits (196), Expect = 1e-13, Method: Composition-based stats. Identities = 27/141 (19%), Positives = 54/141 (38%), Gaps = 15/141 (10%) Query: 18 IARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVM 77 AR AA++ L + E D L +D + +++GV Sbjct: 4 KARNAALKLL-----RDIDIKKAYINLEIKPALKDNSLST------LDRAFITDMVYGVT 52 Query: 78 DRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDF 137 + +D LI + + +ILR G+ +++ VP V +A + Sbjct: 53 RYRLTLDWLIKRYSRGGKA----SPWIRNILRMGMYQILYMDRVPDFAACDSSVELAKKY 108 Query: 138 FYGDEPKFINAVLDKVSRKEE 158 E ++NAVL ++ ++++ Sbjct: 109 AGQREAGYVNAVLRRLIQEKD 129 >gi|313885233|ref|ZP_07818985.1| ribosomal RNA small subunit methyltransferase B [Eremococcus coleocola ACS-139-V-Col8] gi|312619924|gb|EFR31361.1| ribosomal RNA small subunit methyltransferase B [Eremococcus coleocola ACS-139-V-Col8] Length = 456 Score = 79.8 bits (196), Expect = 1e-13, Method: Composition-based stats. Identities = 31/154 (20%), Positives = 65/154 (42%), Gaps = 20/154 (12%) Query: 12 LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELD---VESVYLHVDLEW 68 + ++ +AR A QA +Q + I+ + E + ++ LD E+ VD Sbjct: 1 MKVKKNVARKLADQARFQALL-------ILDQVENHGGYSNVLLDRFHQETSLSPVDTNL 53 Query: 69 FRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMIL---CSILRAGVLELIECHSVPVEV 125 +++GV+ R+ +D ++ + K + S+LR + + I +P Sbjct: 54 VVKLVYGVIQRRYSLDYFLAPFIKGK-------KVDDWVASLLRLSIYQFIYLDRIPDHA 106 Query: 126 IISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEI 159 + S+ V +A + F+N VL R+ ++ Sbjct: 107 VFSQAVEMAKLIGHAGLGGFVNGVLRNFQRRADL 140 >gi|311068095|ref|YP_003973018.1| RNA-binding Sun protein; 16S rRNA m5C967 methyltransferase, S-adenosyl-L-methionine-dependent [Bacillus atrophaeus 1942] gi|310868612|gb|ADP32087.1| RNA-binding Sun protein; 16S rRNA m5C967 methyltransferase, S-adenosyl-L-methionine-dependent [Bacillus atrophaeus 1942] Length = 447 Score = 79.8 bits (196), Expect = 1e-13, Method: Composition-based stats. Identities = 24/142 (16%), Positives = 52/142 (36%), Gaps = 14/142 (9%) Query: 15 RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74 ++ R A++AL ++D + ++ +D D +++ Sbjct: 2 KKNNVRDIALEALMKLDQNQAYSNLLLKSVIKSNELSDQ-----------DRGLLTELVY 50 Query: 75 GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134 G + K +D ++ + + + +LR + ++ +P I E V IA Sbjct: 51 GTLQNKTALDYMLKPFINKPAKVK---PWVIQLLRLSLYQMEYLEKIPHRAAIHEAVEIA 107 Query: 135 HDFFYGDEPKFINAVLDKVSRK 156 + F+N VL V R+ Sbjct: 108 KKRGHKGIASFVNGVLRSVQRE 129 >gi|144575303|gb|AAZ53536.2| hypothetical protein MHP7448_0162 [Mycoplasma hyopneumoniae 7448] Length = 216 Score = 79.8 bits (196), Expect = 1e-13, Method: Composition-based stats. Identities = 35/159 (22%), Positives = 64/159 (40%), Gaps = 21/159 (13%) Query: 5 DNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHV 64 + K + + +R + R+ + +Y + + I E +T F + ++ Sbjct: 73 NKKIEFRNLTKRRLGRMGVISIIYIWQLFDKNID--IKEIKTKYFELTIDQLKLLNFIKK 130 Query: 65 DLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVE 124 + + R + I+ L W++ R+ ++ SIL G EL VP Sbjct: 131 NYSFLRKV--------------INLQLKSNWNWERILPLIRSILLVGAAELFF---VPSR 173 Query: 125 VIISEYVCIAHDFF--YGDEPKFINAVLDKVSRKEEIKR 161 ++ +E V I F +E F+NAVL K+ EIK Sbjct: 174 IVFNEAVEITKIFSIAGDNEFCFVNAVLQKIYNYYEIKN 212 >gi|72080501|ref|YP_287559.1| hypothetical protein MHP7448_0162 [Mycoplasma hyopneumoniae 7448] Length = 219 Score = 79.8 bits (196), Expect = 1e-13, Method: Composition-based stats. Identities = 35/159 (22%), Positives = 64/159 (40%), Gaps = 21/159 (13%) Query: 5 DNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHV 64 + K + + +R + R+ + +Y + + I E +T F + ++ Sbjct: 76 NKKIEFRNLTKRRLGRMGVISIIYIWQLFDKNID--IKEIKTKYFELTIDQLKLLNFIKK 133 Query: 65 DLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVE 124 + + R + I+ L W++ R+ ++ SIL G EL VP Sbjct: 134 NYSFLRKV--------------INLQLKSNWNWERILPLIRSILLVGAAELFF---VPSR 176 Query: 125 VIISEYVCIAHDFF--YGDEPKFINAVLDKVSRKEEIKR 161 ++ +E V I F +E F+NAVL K+ EIK Sbjct: 177 IVFNEAVEITKIFSIAGDNEFCFVNAVLQKIYNYYEIKN 215 >gi|54020397|ref|YP_115733.1| hypothetical protein mhp220 [Mycoplasma hyopneumoniae 232] gi|53987570|gb|AAV27771.1| conserved hypothetical protein [Mycoplasma hyopneumoniae 232] Length = 253 Score = 79.8 bits (196), Expect = 1e-13, Method: Composition-based stats. Identities = 35/159 (22%), Positives = 64/159 (40%), Gaps = 21/159 (13%) Query: 5 DNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHV 64 + K + + +R + R+ + +Y + + I E +T F + ++ Sbjct: 110 NKKIEFRNLTKRRLGRMGVISIIYIWQLFDKNID--IKEIKTKYFELTIDQLKLLNFIKK 167 Query: 65 DLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVE 124 + + R + I+ L W++ R+ ++ SIL G EL VP Sbjct: 168 NYSFLRKV--------------INLQLKSNWNWERILPLIRSILLVGAAELFF---VPSR 210 Query: 125 VIISEYVCIAHDFF--YGDEPKFINAVLDKVSRKEEIKR 161 ++ +E V I F +E F+NAVL K+ EIK Sbjct: 211 IVFNEAVEITKIFSIAGDNEFCFVNAVLQKIYNYYEIKN 249 >gi|144227492|gb|AAZ44249.2| hypothetical protein MHJ_0158 [Mycoplasma hyopneumoniae J] Length = 253 Score = 79.8 bits (196), Expect = 1e-13, Method: Composition-based stats. Identities = 35/159 (22%), Positives = 64/159 (40%), Gaps = 21/159 (13%) Query: 5 DNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHV 64 + K + + +R + R+ + +Y + + I E +T F + ++ Sbjct: 110 NKKIEFRNLTKRRLGRMGVISVIYIWQLFDKNID--IKEIKTKYFELTIDQLKLLNFIKK 167 Query: 65 DLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVE 124 + + R + I+ L W++ R+ ++ SIL G EL VP Sbjct: 168 NYSFLRKV--------------INLQLKSNWNWERILPLIRSILLVGAAELFF---VPSR 210 Query: 125 VIISEYVCIAHDFF--YGDEPKFINAVLDKVSRKEEIKR 161 ++ +E V I F +E F+NAVL K+ EIK Sbjct: 211 IVFNEAVEITKIFSIAGDNEFCFVNAVLQKIYNYYEIKN 249 >gi|166032716|ref|ZP_02235545.1| hypothetical protein DORFOR_02431 [Dorea formicigenerans ATCC 27755] gi|166027073|gb|EDR45830.1| hypothetical protein DORFOR_02431 [Dorea formicigenerans ATCC 27755] Length = 433 Score = 79.4 bits (195), Expect = 1e-13, Method: Composition-based stats. Identities = 24/105 (22%), Positives = 49/105 (46%), Gaps = 2/105 (1%) Query: 55 LDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLE 114 LD + + ++ G ++R+ ID +I+ K ++ ++ +ILR+ V + Sbjct: 33 LDKYQYLEKRERAFITRVVEGTLERQIEIDYIINQF--SKVKVNKQKPVIRTILRSSVYQ 90 Query: 115 LIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEI 159 L VP + +E V +A + + F+N VL +SR ++ Sbjct: 91 LKYMDHVPDSAVCNEAVKLAGKKGFVNLKGFVNGVLRNISRNLDM 135 >gi|291458605|ref|ZP_06597995.1| ribosomal RNA small subunit methyltransferase B [Oribacterium sp. oral taxon 078 str. F0262] gi|291419138|gb|EFE92857.1| ribosomal RNA small subunit methyltransferase B [Oribacterium sp. oral taxon 078 str. F0262] Length = 427 Score = 79.4 bits (195), Expect = 1e-13, Method: Composition-based stats. Identities = 29/158 (18%), Positives = 64/158 (40%), Gaps = 14/158 (8%) Query: 3 IQDNKKDLKLSHRRGIA--RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESV 60 + + K ++ R R A+ L+ +I + + EL Sbjct: 1 MGEGGKRMRGERIRRSEDPRNTALSILF----------DIFEKGKHSHIALREELSKYKA 50 Query: 61 YLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHS 120 D + +++G ++R +D + C + ++ +L ++LR G +++ Sbjct: 51 MPERDRAFLTRLVNGTVERSVTLDYFLDRC--SRLKVKKMRPLLRTLLRMGSFQILFSDR 108 Query: 121 VPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEE 158 VP ++E V ++H F+NAVL ++S ++E Sbjct: 109 VPDSAAVNESVKLSHRRGLSGLSSFVNAVLRRISGEKE 146 >gi|149920268|ref|ZP_01908739.1| hypothetical protein PPSIR1_08951 [Plesiocystis pacifica SIR-1] gi|149818855|gb|EDM78295.1| hypothetical protein PPSIR1_08951 [Plesiocystis pacifica SIR-1] Length = 169 Score = 79.4 bits (195), Expect = 1e-13, Method: Composition-based stats. Identities = 28/156 (17%), Positives = 59/156 (37%), Gaps = 16/156 (10%) Query: 1 MTIQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELD---- 56 M+ + K R R A+ + ++ G + + + T R + + D Sbjct: 1 MSGGEGKP-----TSRARGRELALWLMCHLERRGEGSRAALELFWTERPEFEVDDDFLGV 55 Query: 57 -----VESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAG 111 + + W R + ++ +D I + +E+W R+D + ++LR Sbjct: 56 AGPQMRDIIEDSSARRWARRLTEAYLEDAAAVDQAIGAA-SERWRIERMDRVDRNVLRLA 114 Query: 112 VLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFIN 147 +EL P V+++E V +A + F+N Sbjct: 115 AVELR-TQKTPRNVVVAEAVRLAARYGSERSAAFVN 149 >gi|260436645|ref|ZP_05790615.1| transcription antitermination factor NusB [Synechococcus sp. WH 8109] gi|260414519|gb|EEX07815.1| transcription antitermination factor NusB [Synechococcus sp. WH 8109] Length = 211 Score = 79.4 bits (195), Expect = 2e-13, Method: Composition-based stats. Identities = 23/81 (28%), Positives = 39/81 (48%), Gaps = 2/81 (2%) Query: 73 IHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVC 132 + V+ +++ ID + + E W +RL I ILR V++L E P V +E V Sbjct: 124 VQKVLTQREGIDRRLDQVM-EGWRLTRLPRIDRDILRLAVVDL-ESLRTPAPVAFNEAVE 181 Query: 133 IAHDFFYGDEPKFINAVLDKV 153 +A+ + + IN VL + Sbjct: 182 LANRYSDDQGRRMINGVLRRF 202 >gi|168186789|ref|ZP_02621424.1| ribosomal RNA small subunit methyltransferase B [Clostridium botulinum C str. Eklund] gi|169295225|gb|EDS77358.1| ribosomal RNA small subunit methyltransferase B [Clostridium botulinum C str. Eklund] Length = 443 Score = 79.4 bits (195), Expect = 2e-13, Method: Composition-based stats. Identities = 26/125 (20%), Positives = 49/125 (39%), Gaps = 2/125 (1%) Query: 36 STTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKW 95 E++ + Y + ++ D I++G + K ID ++++ L + Sbjct: 10 DVLEMVFKKNAYSNIVLRQTLNKNKIDDKDKGLITEIVYGTIKYKYTIDTILNNYLKKG- 68 Query: 96 SFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSR 155 LD + +ILR V ++ +P ++E V IA K +N VL R Sbjct: 69 -IKSLDSYVLNILRITVYQIKFLDKIPNFAAVNEAVEIAKKQRSVGASKLVNGVLRNYLR 127 Query: 156 KEEIK 160 + K Sbjct: 128 NLDKK 132 >gi|312601103|gb|ADQ90358.1| hypothetical protein MHP168_141 [Mycoplasma hyopneumoniae 168] Length = 231 Score = 79.4 bits (195), Expect = 2e-13, Method: Composition-based stats. Identities = 35/159 (22%), Positives = 64/159 (40%), Gaps = 21/159 (13%) Query: 5 DNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHV 64 + K + + +R + R+ + +Y + + I E +T F + ++ Sbjct: 88 NKKIEFRNLTKRRLGRMGVISIIYIWQLFDKNID--IKEIKTKYFELTIDQLKLLNFIKK 145 Query: 65 DLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVE 124 + + R + I+ L W++ R+ ++ SIL G EL VP Sbjct: 146 NYSFLRKV--------------INLQLKSNWNWERILPLIRSILLVGAAELFF---VPSR 188 Query: 125 VIISEYVCIAHDFF--YGDEPKFINAVLDKVSRKEEIKR 161 ++ +E V I F +E F+NAVL K+ EIK Sbjct: 189 IVFNEAVEITKIFSIAGDNEFCFVNAVLQKIYNYYEIKN 227 >gi|71893514|ref|YP_278960.1| hypothetical protein MHJ_0158 [Mycoplasma hyopneumoniae J] Length = 199 Score = 79.0 bits (194), Expect = 2e-13, Method: Composition-based stats. Identities = 35/159 (22%), Positives = 64/159 (40%), Gaps = 21/159 (13%) Query: 5 DNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHV 64 + K + + +R + R+ + +Y + + I E +T F + ++ Sbjct: 56 NKKIEFRNLTKRRLGRMGVISVIYIWQLFDKNID--IKEIKTKYFELTIDQLKLLNFIKK 113 Query: 65 DLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVE 124 + + R + I+ L W++ R+ ++ SIL G EL VP Sbjct: 114 NYSFLRKV--------------INLQLKSNWNWERILPLIRSILLVGAAELFF---VPSR 156 Query: 125 VIISEYVCIAHDFF--YGDEPKFINAVLDKVSRKEEIKR 161 ++ +E V I F +E F+NAVL K+ EIK Sbjct: 157 IVFNEAVEITKIFSIAGDNEFCFVNAVLQKIYNYYEIKN 195 >gi|326790876|ref|YP_004308697.1| sun protein [Clostridium lentocellum DSM 5427] gi|326541640|gb|ADZ83499.1| sun protein [Clostridium lentocellum DSM 5427] Length = 445 Score = 79.0 bits (194), Expect = 2e-13, Method: Composition-based stats. Identities = 18/94 (19%), Positives = 45/94 (47%), Gaps = 2/94 (2%) Query: 65 DLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVE 124 D + +++G + + +D +++ K R+ ++ +++R + +++ VP Sbjct: 38 DKGFVTEVVYGTLKYQIKLDYILNQF--SKTPVHRMKPLIRNVMRMSLYQMLYLDKVPTS 95 Query: 125 VIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEE 158 II+E V I + + F+N +L + R+ E Sbjct: 96 AIINEAVKIVKKRKFQNLSGFVNGLLRNIDRQRE 129 >gi|255525650|ref|ZP_05392583.1| sun protein [Clostridium carboxidivorans P7] gi|296185410|ref|ZP_06853820.1| ribosomal RNA small subunit methyltransferase B [Clostridium carboxidivorans P7] gi|255510636|gb|EET86943.1| sun protein [Clostridium carboxidivorans P7] gi|296050244|gb|EFG89668.1| ribosomal RNA small subunit methyltransferase B [Clostridium carboxidivorans P7] Length = 442 Score = 79.0 bits (194), Expect = 2e-13, Method: Composition-based stats. Identities = 27/141 (19%), Positives = 54/141 (38%), Gaps = 14/141 (9%) Query: 19 ARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMD 78 AR AV+ L ++ + +I + D D I++G + Sbjct: 4 ARKTAVKILKEVFYGNSYSNMVIGKELNRSDMNDK-----------DKALVTEIVYGTLK 52 Query: 79 RKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFF 138 K ID +++ + +LD+ + +ILR + ++ +P +++E V +A Sbjct: 53 YKYTIDTILNYYIKSG--LKKLDVDILNILRISIYQIRYLDKIPEFAVVNEAVELAKR-K 109 Query: 139 YGDEPKFINAVLDKVSRKEEI 159 + +N VL R I Sbjct: 110 AVKTARLVNGVLRSYLRSNNI 130 >gi|194333562|ref|YP_002015422.1| sun protein [Prosthecochloris aestuarii DSM 271] gi|194311380|gb|ACF45775.1| sun protein [Prosthecochloris aestuarii DSM 271] Length = 449 Score = 79.0 bits (194), Expect = 2e-13, Method: Composition-based stats. Identities = 31/136 (22%), Positives = 57/136 (41%), Gaps = 13/136 (9%) Query: 19 ARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMD 78 AR A+ L + C E+ SE +R+ + D +++G++ Sbjct: 9 AREIALLTL-----VECEREEVKSEQALHRYLNKYKT------ARNDSALATELVNGILR 57 Query: 79 RKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFF 138 +Q ID +I++ K + L +ILR GV +L +P +S+ V +A + Sbjct: 58 FRQSIDSIITAFYHHK--LKKASPFLVNILRIGVYQLRYLDRIPDWAAVSQCVDLARKYK 115 Query: 139 YGDEPKFINAVLDKVS 154 + +N VL V+ Sbjct: 116 GQHIARIVNGVLRSVA 131 >gi|78211568|ref|YP_380347.1| transcription antitermination protein NusB [Synechococcus sp. CC9605] gi|78196027|gb|ABB33792.1| NusB family protein [Synechococcus sp. CC9605] Length = 211 Score = 79.0 bits (194), Expect = 2e-13, Method: Composition-based stats. Identities = 23/81 (28%), Positives = 39/81 (48%), Gaps = 2/81 (2%) Query: 73 IHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVC 132 + V+ +++ ID + + E W +RL I ILR V++L E P V +E V Sbjct: 124 VQKVLTQREGIDKRLDQVM-EGWRLTRLPRIDRDILRLAVVDL-ESLRTPAPVAFNEAVE 181 Query: 133 IAHDFFYGDEPKFINAVLDKV 153 +A+ + + IN VL + Sbjct: 182 LANRYSDEQGRRMINGVLRRF 202 >gi|331082369|ref|ZP_08331495.1| ribosomal RNA small subunit methyltransferase B [Lachnospiraceae bacterium 6_1_63FAA] gi|330400855|gb|EGG80456.1| ribosomal RNA small subunit methyltransferase B [Lachnospiraceae bacterium 6_1_63FAA] Length = 454 Score = 79.0 bits (194), Expect = 2e-13, Method: Composition-based stats. Identities = 24/118 (20%), Positives = 50/118 (42%), Gaps = 2/118 (1%) Query: 39 EIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFS 98 EI E + + L+ + + + G ++ K +D ++ + Sbjct: 17 EINKEGQHSHLVIRSTLEKYQYLEKQERAFLTRVCEGTLEYKLRLDYILDQYSSV--PVE 74 Query: 99 RLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRK 156 ++ ++ ILR+ V +L+ +VP + E V +A + + F+N VL KV+R Sbjct: 75 KMKPVIREILRSSVYQLLYMDNVPDSAVCDEAVKLARKKGFYNLTGFVNGVLRKVARD 132 >gi|81299771|ref|YP_399979.1| sun protein [Synechococcus elongatus PCC 7942] gi|81168652|gb|ABB56992.1| sun protein [Synechococcus elongatus PCC 7942] Length = 451 Score = 79.0 bits (194), Expect = 2e-13, Method: Composition-based stats. Identities = 33/149 (22%), Positives = 59/149 (39%), Gaps = 14/149 (9%) Query: 12 LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71 RG AR A Q L I E D L S + D Sbjct: 2 PRPSRGNARWVAFQTL-----------TTIREGAFADLALDRHLQR-SGLVGADRRLVTE 49 Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131 +++G + R++ +D LI L + ++ +L ++L+ G+ +L +P ++E V Sbjct: 50 LVYGCVRRQRTLDALID--LLAQRPAAQQPPVLRTVLQLGLYQLRYLEQIPTAAAVAETV 107 Query: 132 CIAHDFFYGDEPKFINAVLDKVSRKEEIK 160 +A G +NA+L + R+ E + Sbjct: 108 QLAKQLGLGGLSGAVNAILRQYLRQSEER 136 >gi|78221293|ref|YP_383040.1| Fmu, rRNA SAM-dependent methyltransferase:Nop2p [Geobacter metallireducens GS-15] gi|78192548|gb|ABB30315.1| Fmu, rRNA SAM-dependent methyltransferase:Nop2p [Geobacter metallireducens GS-15] Length = 446 Score = 79.0 bits (194), Expect = 2e-13, Method: Composition-based stats. Identities = 30/129 (23%), Positives = 54/129 (41%), Gaps = 12/129 (9%) Query: 36 STTEIISEYETYRFCADTELDVE---SVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLT 92 + +I+ E R A+ LD E D +++GV+ R+ +D L+ + Sbjct: 9 TALDILLRVERDRAFAEQLLDRELSLGTLTGPDRGLLTELVYGVLRRQGTLDFLVDAFAA 68 Query: 93 EKWSFSRLDMILCSIL---RAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAV 149 SR + +IL R G+ +L +P ++E V +A F+NAV Sbjct: 69 -----SRSGKLERAILVILRLGLYQLFFLDRIPTSAAVNESVNLAKA-VAPRAAGFVNAV 122 Query: 150 LDKVSRKEE 158 L + R+ + Sbjct: 123 LRRADRERD 131 >gi|194014930|ref|ZP_03053547.1| ribosomal RNA small subunit methyltransferase B [Bacillus pumilus ATCC 7061] gi|194013956|gb|EDW23521.1| ribosomal RNA small subunit methyltransferase B [Bacillus pumilus ATCC 7061] Length = 442 Score = 79.0 bits (194), Expect = 2e-13, Method: Composition-based stats. Identities = 21/137 (15%), Positives = 52/137 (37%), Gaps = 14/137 (10%) Query: 20 RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79 R A+ AL +++ + ++ + AD D +++G + Sbjct: 2 RELALDALIKLEQNQAYSNLLLQSVMKDKDLADQ-----------DKPLLTELVYGTLQN 50 Query: 80 KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139 K +D +++ + + ++ + +LR + +++ +P I E V + + Sbjct: 51 KLALDYMLAPFVKK---PQKVAPWVMQLLRMSLYQMVYLEKIPHRAAIHEAVELTKKRGH 107 Query: 140 GDEPKFINAVLDKVSRK 156 +N VL V R+ Sbjct: 108 KGISSLVNGVLRSVQRE 124 >gi|308069674|ref|YP_003871279.1| ribosomal RNA small subunit methyltransferase B (rRNA (cytosine-C(5)-)-methyltransferase) [Paenibacillus polymyxa E681] gi|305858953|gb|ADM70741.1| Ribosomal RNA small subunit methyltransferase B (rRNA (cytosine-C(5)-)-methyltransferase) [Paenibacillus polymyxa E681] Length = 471 Score = 79.0 bits (194), Expect = 2e-13, Method: Composition-based stats. Identities = 29/147 (19%), Positives = 57/147 (38%), Gaps = 13/147 (8%) Query: 15 RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74 R AR A+ L ++ G Y ++ D +++ Sbjct: 23 RNQTAREVALDVLIGVEQEG-----------AYSNLELNRRLQQAGLSASDAGLATELVY 71 Query: 75 GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134 G + R+ +D ++ + + ++L + S+LR V +L+ VP ++SE V IA Sbjct: 72 GTVARRNTLDYFLNKFVQKG--TAKLQAWVRSLLRMSVYQLVYLDRVPDHAVVSEAVTIA 129 Query: 135 HDFFYGDEPKFINAVLDKVSRKEEIKR 161 + +N VL + R+ + R Sbjct: 130 KRRGHQGISGMVNGVLRSMLREPDKLR 156 >gi|123967545|ref|YP_001008403.1| transcription antitermination protein NusB [Prochlorococcus marinus str. AS9601] gi|123197655|gb|ABM69296.1| Antitermination protein NusB [Prochlorococcus marinus str. AS9601] Length = 208 Score = 79.0 bits (194), Expect = 2e-13, Method: Composition-based stats. Identities = 23/78 (29%), Positives = 34/78 (43%), Gaps = 2/78 (2%) Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135 +++ + ID I + W RL I ILR I + PV V E V +A+ Sbjct: 127 IINNLKSIDSDIDQVMD-GWRLKRLPRIDRDILRLA-YVDINFLNTPVAVACDEAVNLAN 184 Query: 136 DFFYGDEPKFINAVLDKV 153 + KFIN VL ++ Sbjct: 185 KYSDLKGRKFINGVLRRL 202 >gi|304437063|ref|ZP_07397026.1| ribosomal RNA small subunit methyltransferase B [Selenomonas sp. oral taxon 149 str. 67H29BP] gi|304370014|gb|EFM23676.1| ribosomal RNA small subunit methyltransferase B [Selenomonas sp. oral taxon 149 str. 67H29BP] Length = 449 Score = 78.6 bits (193), Expect = 2e-13, Method: Composition-based stats. Identities = 23/139 (16%), Positives = 48/139 (34%), Gaps = 14/139 (10%) Query: 20 RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79 R A+Q L + SE Y A + + D + +++G + Sbjct: 14 RERAMQVL----------LRVHSE-GAYANVALVDALRGAAMAERDRRFLTELVYGTVKA 62 Query: 80 KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139 + +D++I + + + +LR G ++ +P + V +A Sbjct: 63 GETLDVMIRRYVA---DLKKAQPPIRELLRLGFYQIFFMDKIPSSAVCHTAVELAKKHGG 119 Query: 140 GDEPKFINAVLDKVSRKEE 158 F+N VL R+ + Sbjct: 120 KGAASFVNGVLRTALREPQ 138 >gi|33864549|ref|NP_896108.1| transcription antitermination protein NusB [Synechococcus sp. WH 8102] gi|33632072|emb|CAE06525.1| NusB family protein [Synechococcus sp. WH 8102] Length = 211 Score = 78.6 bits (193), Expect = 2e-13, Method: Composition-based stats. Identities = 24/81 (29%), Positives = 40/81 (49%), Gaps = 2/81 (2%) Query: 73 IHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVC 132 + V++++ ID + S + E W SRL + ILR V++L + P V SE V Sbjct: 124 VSCVLNKRDRIDAELDSVM-EGWRLSRLPRLDRDILRLAVVDLRD-LGTPAPVAFSEAVE 181 Query: 133 IAHDFFYGDEPKFINAVLDKV 153 +A+ + + IN VL + Sbjct: 182 LANRYSDEQGRRMINGVLRRF 202 >gi|78183594|ref|YP_376028.1| transcription antitermination protein NusB [Synechococcus sp. CC9902] gi|78167888|gb|ABB24985.1| NusB antitermination factor [Synechococcus sp. CC9902] Length = 211 Score = 78.6 bits (193), Expect = 3e-13, Method: Composition-based stats. Identities = 22/78 (28%), Positives = 37/78 (47%), Gaps = 2/78 (2%) Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135 V+ +++ ID + + E W RL I ILR V++L + P V +E V +A+ Sbjct: 127 VIRQRESIDARLDQVM-EGWRLGRLPRIDRDILRLAVVDL-QTMGTPAPVAFNEAVELAN 184 Query: 136 DFFYGDEPKFINAVLDKV 153 + + IN VL + Sbjct: 185 RYSDEQGRRMINGVLRRF 202 >gi|91763232|ref|ZP_01265196.1| Antitermination protein NusB [Candidatus Pelagibacter ubique HTCC1002] gi|91717645|gb|EAS84296.1| Antitermination protein NusB [Candidatus Pelagibacter ubique HTCC1002] Length = 134 Score = 78.6 bits (193), Expect = 3e-13, Method: Composition-based stats. Identities = 28/117 (23%), Positives = 59/117 (50%), Gaps = 3/117 (2%) Query: 40 IISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSR 99 II + F DT+L ++ + ++ G ++R + I + L+E + Sbjct: 15 IIQKLYGNFFNDDTDLTFPKHRFK---KFIKDVVLGTIERDEVIKEEVRKYLSEDIELTN 71 Query: 100 LDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRK 156 LD + I+++ + E + V ++II EY+ ++ F + K++NA+LDK+++K Sbjct: 72 LDQVFQVIVKSAIFEFLYKPKVSSKIIIKEYLNASNFFLEDGQTKYLNAILDKIAKK 128 >gi|194246432|ref|YP_002004071.1| Transcription termination factor [Candidatus Phytoplasma mali] gi|194246854|ref|YP_002004495.1| Transcription termination factor [Candidatus Phytoplasma mali] gi|193806789|emb|CAP18216.1| Transcription termination factor [Candidatus Phytoplasma mali] gi|193807213|emb|CAP18656.1| Transcription termination factor [Candidatus Phytoplasma mali] Length = 142 Score = 78.6 bits (193), Expect = 3e-13, Method: Composition-based stats. Identities = 30/136 (22%), Positives = 56/136 (41%), Gaps = 10/136 (7%) Query: 39 EIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFS 98 E++ Y F + L +F+ II + ID +I L + Sbjct: 10 EVLILLYQYDFYLQDLKFLNYTTKPQSLVFFQKII----PKITLIDEIIQKNLY-NYQLK 64 Query: 99 RLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFF---YGDEPKFINAVLDKVSR 155 RL+ + +ILR EL+E + +II E + + + + KF N +LD++ Sbjct: 65 RLNKVDQAILRLATFELLENKII-APIIIDEALELTKRYSELDDQKQHKFNNKILDQIYH 123 Query: 156 KEE-IKRSGCVSAITQ 170 + +K + V I++ Sbjct: 124 SLKSLKTNLEVKKISE 139 >gi|291549490|emb|CBL25752.1| ribosomal RNA small subunit methyltransferase RsmB [Ruminococcus torques L2-14] Length = 463 Score = 78.6 bits (193), Expect = 3e-13, Method: Composition-based stats. Identities = 28/141 (19%), Positives = 57/141 (40%), Gaps = 16/141 (11%) Query: 20 RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79 R ++ L +I G + +I+ + L + + ++ G ++ Sbjct: 8 REVVLEILMEITENGAYSHKILGDV----------LSKYQYLEKRERAFITRVVEGTLEH 57 Query: 80 KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA--HDF 137 ID +++ K ++ ++ ++LR+ V +L SVP + SE V +A F Sbjct: 58 MIEIDYILNQ--ISKTKVKKMKPVIRNLLRSSVYQLKYMDSVPDHAVCSEAVKLAVRKGF 115 Query: 138 FYGDEPKFINAVLDKVSRKEE 158 ++N VL V RK + Sbjct: 116 SGLR--GYVNGVLRNVVRKMD 134 >gi|197119890|ref|YP_002140317.1| 16S rRNA (5-methyl-C967)-methyltransferase [Geobacter bemidjiensis Bem] gi|197089250|gb|ACH40521.1| 16S rRNA (5-methyl-C967)-methyltransferase [Geobacter bemidjiensis Bem] Length = 448 Score = 78.6 bits (193), Expect = 3e-13, Method: Composition-based stats. Identities = 34/152 (22%), Positives = 59/152 (38%), Gaps = 21/152 (13%) Query: 20 RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79 R AA L I E D EL + + D +++GV+ R Sbjct: 7 RRAAFDIL----------LRIEKEKSFADILIDHELSKD-IIKGADRGLLTELVYGVLRR 55 Query: 80 KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139 + +D +IS + +L++ + +LR G+ + VPV ++E V +A + Sbjct: 56 QGTLDYIISQFSKQ--RPEKLELFVRLLLRLGIYQCFFLDRVPVSAAVNETVNLAKEL-A 112 Query: 140 GDEPKFINAVL-------DKVSRKEEIKRSGC 164 FINAVL D ++ + +R Sbjct: 113 PRASGFINAVLRNADRGRDTIAYPDRAERPAE 144 >gi|301063983|ref|ZP_07204448.1| ribosomal RNA small subunit methyltransferase B [delta proteobacterium NaphS2] gi|300441894|gb|EFK06194.1| ribosomal RNA small subunit methyltransferase B [delta proteobacterium NaphS2] Length = 447 Score = 78.6 bits (193), Expect = 3e-13, Method: Composition-based stats. Identities = 19/96 (19%), Positives = 45/96 (46%), Gaps = 2/96 (2%) Query: 62 LHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSV 121 D + ++ GV+ + +D ++ + ++ F ++D + ILR + ++I V Sbjct: 35 SERDRAFAVHLVQGVLRWQIRLDWILKQYV--RFPFGKIDPEVLDILRLALFQIIFLDRV 92 Query: 122 PVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKE 157 P ++E V A +F+N +L ++ R++ Sbjct: 93 PDSAAVNEAVKQADKKGRKHVARFVNGILRQICREK 128 >gi|126695346|ref|YP_001090232.1| transcription antitermination protein NusB [Prochlorococcus marinus str. MIT 9301] gi|126542389|gb|ABO16631.1| Antitermination protein NusB [Prochlorococcus marinus str. MIT 9301] Length = 205 Score = 78.6 bits (193), Expect = 3e-13, Method: Composition-based stats. Identities = 23/78 (29%), Positives = 34/78 (43%), Gaps = 2/78 (2%) Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135 +++ + ID I + W RL I ILR I + PV V E V +A+ Sbjct: 127 IINNLKSIDSDIDQAMD-GWRLKRLPRIDRDILRLA-YVDINFLNTPVAVACDEAVNLAN 184 Query: 136 DFFYGDEPKFINAVLDKV 153 + KFIN VL ++ Sbjct: 185 KYSDLQGRKFINGVLRRL 202 >gi|261367358|ref|ZP_05980241.1| ribosomal RNA small subunit methyltransferase B [Subdoligranulum variabile DSM 15176] gi|282570118|gb|EFB75653.1| ribosomal RNA small subunit methyltransferase B [Subdoligranulum variabile DSM 15176] Length = 437 Score = 78.2 bits (192), Expect = 3e-13, Method: Composition-based stats. Identities = 28/135 (20%), Positives = 54/135 (40%), Gaps = 13/135 (9%) Query: 20 RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79 R AV+AL + G + + +E + D + I + V++ Sbjct: 4 RRLAVKALLHQEQAGYANLVLDAELKKCT----------PPLEGRDAAFAARIFYTVLEY 53 Query: 80 KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139 + +D L+ + +RLD + +ILRAG+ + VP+ ++E V + Sbjct: 54 QPLLDFLLDRFSKK--PVARLDAPVRAILRAGLAQARFM-EVPLPAAVNESVKLTKAMGK 110 Query: 140 GDEPKFINAVLDKVS 154 +NAVL + + Sbjct: 111 TSAAGMVNAVLRRAA 125 >gi|229822831|ref|ZP_04448901.1| hypothetical protein GCWU000282_00120 [Catonella morbi ATCC 51271] gi|229787644|gb|EEP23758.1| hypothetical protein GCWU000282_00120 [Catonella morbi ATCC 51271] Length = 457 Score = 78.2 bits (192), Expect = 4e-13, Method: Composition-based stats. Identities = 30/160 (18%), Positives = 62/160 (38%), Gaps = 18/160 (11%) Query: 13 SHRR--GIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFR 70 + +R R A+Q L +ID ++ Y +S VD Sbjct: 7 AAKRLKHNVRFQALQLLVEID-----------WHDQYSNVLLNRALSQSELKPVDQGLLV 55 Query: 71 VIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEY 130 +++G + + +D + + K +L+ + S+LR +++ +P I+E Sbjct: 56 NLVYGSIQHRLTLDFYLEPFIKGK----KLEPWIRSLLRMTAYQMLYLERIPDHAAINEA 111 Query: 131 VCIAHDFFYGDEPKFINAVLDKVSRKEEIKRSGCVSAITQ 170 V IA + +N VL R++E++ V+ + Sbjct: 112 VNIAKLNGHAGLAGLVNGVLRNF-RRQELRSLDSVTDPIE 150 >gi|218132886|ref|ZP_03461690.1| hypothetical protein BACPEC_00747 [Bacteroides pectinophilus ATCC 43243] gi|217991759|gb|EEC57763.1| hypothetical protein BACPEC_00747 [Bacteroides pectinophilus ATCC 43243] Length = 374 Score = 78.2 bits (192), Expect = 4e-13, Method: Composition-based stats. Identities = 21/98 (21%), Positives = 40/98 (40%), Gaps = 2/98 (2%) Query: 59 SVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIEC 118 + + G ++R D LI + S ++ ++ +I+R +L Sbjct: 40 QYLPKSQRAFISRLAEGTIERSIEEDWLIDHVSSV--STKKMKPVIRNIMRMSAYQLKYM 97 Query: 119 HSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRK 156 SVPV + +E V +A + F+N VL ++R Sbjct: 98 DSVPVSAVCNEAVKLARKRGFSSLTGFVNGVLRSLARD 135 >gi|70726699|ref|YP_253613.1| hypothetical protein SH1698 [Staphylococcus haemolyticus JCSC1435] gi|68447423|dbj|BAE05007.1| unnamed protein product [Staphylococcus haemolyticus JCSC1435] Length = 435 Score = 78.2 bits (192), Expect = 4e-13, Method: Composition-based stats. Identities = 29/141 (20%), Positives = 51/141 (36%), Gaps = 22/141 (15%) Query: 20 RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79 R A Q + EI ++Y Y E+ +D + +++G + R Sbjct: 6 RELAFQ----------TIQEIFNDY-AYSNLRINEVLSTGDVSDIDKPLYTELVYGTVKR 54 Query: 80 KQHIDLLISSCLT---EKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHD 136 K +D + + + W + +L + + I VP II+E V IA Sbjct: 55 KMTLDFYLRPFVKTKIKSW--------VRQLLWMSLYQYIYLDKVPNHAIINEAVNIAKH 106 Query: 137 FFYGDEPKFINAVLDKVSRKE 157 +NA+L + R E Sbjct: 107 RGGPHNGNVVNAILRTIFRSE 127 >gi|329926565|ref|ZP_08280978.1| ribosomal RNA small subunit methyltransferase B [Paenibacillus sp. HGF5] gi|328939106|gb|EGG35469.1| ribosomal RNA small subunit methyltransferase B [Paenibacillus sp. HGF5] Length = 442 Score = 77.8 bits (191), Expect = 4e-13, Method: Composition-based stats. Identities = 19/101 (18%), Positives = 44/101 (43%), Gaps = 2/101 (1%) Query: 58 ESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIE 117 +S D +I+G + R +D + + + +L + ++LR + +++ Sbjct: 24 KSSLAKSDAGLATELIYGTISRLNTLDYFLDKFVNKG--VRKLQPWVRALLRISLYQIVY 81 Query: 118 CHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEE 158 +P ++SE V +A + +N VL + R++E Sbjct: 82 LDRIPDHAVVSEAVNLAKRRGHQGISGMVNGVLRNILRQKE 122 >gi|297617049|ref|YP_003702208.1| sun protein [Syntrophothermus lipocalidus DSM 12680] gi|297144886|gb|ADI01643.1| sun protein [Syntrophothermus lipocalidus DSM 12680] Length = 460 Score = 77.8 bits (191), Expect = 4e-13, Method: Composition-based stats. Identities = 29/137 (21%), Positives = 55/137 (40%), Gaps = 13/137 (9%) Query: 20 RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79 R A+ LY+++ G D ELD +++G + Sbjct: 12 REVALNLLYRVEHKGAYA----------NLAVDRELDRYEDN-GSQHALVTELVNGTVRM 60 Query: 80 KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139 ++H+D +++ L++ + + L ILR V +L+ +VP +++E V +A Sbjct: 61 RKHLDWVLNLFLSK--PIQKQNPWLREILRMSVYQLLFMDNVPEYAVVNEAVGLAGRKLD 118 Query: 140 GDEPKFINAVLDKVSRK 156 +N VL V R Sbjct: 119 RGLSAVVNGVLRNVIRN 135 >gi|124024721|ref|YP_001013837.1| transcription antitermination protein NusB [Prochlorococcus marinus str. NATL1A] gi|123959789|gb|ABM74572.1| Antitermination protein NusB [Prochlorococcus marinus str. NATL1A] Length = 208 Score = 77.8 bits (191), Expect = 4e-13, Method: Composition-based stats. Identities = 29/125 (23%), Positives = 55/125 (44%), Gaps = 6/125 (4%) Query: 33 IGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVI----IHGVMDRKQHIDLLIS 88 + + E C +++ + VD + R + + V++++ ID + Sbjct: 76 SQNHLKTCLIDSENILNCLSESIELPRLLALVDQKEIRELAVRRVDLVIEKQDEIDHTLD 135 Query: 89 SCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINA 148 S + E W RL I ILR ++LI+ + P+ V +E V +A+ + + IN Sbjct: 136 SVM-EGWRLKRLPRIDRDILRLAWVDLIDF-NTPMAVTCNEAVNLANRYSDVQGRRMING 193 Query: 149 VLDKV 153 VL K+ Sbjct: 194 VLRKL 198 >gi|228954142|ref|ZP_04116170.1| Ribosomal RNA small subunit methyltransferase B [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|229071363|ref|ZP_04204586.1| Ribosomal RNA small subunit methyltransferase B [Bacillus cereus F65185] gi|229081120|ref|ZP_04213630.1| Ribosomal RNA small subunit methyltransferase B [Bacillus cereus Rock4-2] gi|228702164|gb|EEL54640.1| Ribosomal RNA small subunit methyltransferase B [Bacillus cereus Rock4-2] gi|228711817|gb|EEL63769.1| Ribosomal RNA small subunit methyltransferase B [Bacillus cereus F65185] gi|228805462|gb|EEM52053.1| Ribosomal RNA small subunit methyltransferase B [Bacillus thuringiensis serovar kurstaki str. T03a001] Length = 429 Score = 77.8 bits (191), Expect = 4e-13, Method: Composition-based stats. Identities = 23/104 (22%), Positives = 43/104 (41%), Gaps = 5/104 (4%) Query: 53 TELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGV 112 L +S D+ I++G + R+ +D + L +K ++ + +LR + Sbjct: 13 NNLIEKSAIDRKDIGLLTEIVYGTIQRRDTLDYYLQPFLKKK-----VEAWVRVLLRLSL 67 Query: 113 LELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRK 156 ++I VP I E V IA + +N VL + R+ Sbjct: 68 YQMIYLDRVPERAAIHEAVEIAKRRGHKGIAGMVNGVLRSIQRE 111 >gi|291522862|emb|CBK81155.1| ribosomal RNA small subunit methyltransferase RsmB [Coprococcus catus GD/7] Length = 455 Score = 77.8 bits (191), Expect = 4e-13, Method: Composition-based stats. Identities = 21/134 (15%), Positives = 49/134 (36%), Gaps = 8/134 (5%) Query: 26 ALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDL 85 +Y + + + E L D + + G ++ + +D Sbjct: 10 IVYDMLMS------VEKENTPSHLLLSQTLMKYQYLDKRDRAFISRLFRGTLEYEIFLDG 63 Query: 86 LISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKF 145 +I + +++ + +ILR V ++++ +P E V + + F Sbjct: 64 VIRQFSSV--RLNKIKTPIKAILRMSVYQILKMDHIPDAAACDEAVKLTRKRGLKNLSGF 121 Query: 146 INAVLDKVSRKEEI 159 +N VL +SR +E+ Sbjct: 122 VNGVLRNISRNKEV 135 >gi|261405800|ref|YP_003242041.1| sun protein [Paenibacillus sp. Y412MC10] gi|261282263|gb|ACX64234.1| sun protein [Paenibacillus sp. Y412MC10] Length = 442 Score = 77.8 bits (191), Expect = 4e-13, Method: Composition-based stats. Identities = 19/101 (18%), Positives = 44/101 (43%), Gaps = 2/101 (1%) Query: 58 ESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIE 117 +S D +I+G + R +D + + + +L + ++LR + +++ Sbjct: 24 KSSLAKSDAGLATELIYGTISRLNTLDYFLDKFVNKG--VRKLQPWVRALLRISLYQIVY 81 Query: 118 CHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEE 158 +P ++SE V +A + +N VL + R++E Sbjct: 82 LDRIPDHAVVSEAVNLAKRRGHQGISGMVNGVLRNILRQKE 122 >gi|229111336|ref|ZP_04240889.1| Ribosomal RNA small subunit methyltransferase B [Bacillus cereus Rock1-15] gi|228672112|gb|EEL27403.1| Ribosomal RNA small subunit methyltransferase B [Bacillus cereus Rock1-15] Length = 429 Score = 77.8 bits (191), Expect = 4e-13, Method: Composition-based stats. Identities = 23/104 (22%), Positives = 43/104 (41%), Gaps = 5/104 (4%) Query: 53 TELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGV 112 L +S D+ I++G + R+ +D + L +K ++ + +LR + Sbjct: 13 NNLIEKSAIDRKDIGLLTEIVYGTIQRRDTLDYYLQPFLKKK-----VEAWVRVLLRLSL 67 Query: 113 LELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRK 156 ++I VP I E V IA + +N VL + R+ Sbjct: 68 YQMIYLDRVPERAAIHEAVEIAKRRGHKGIAGMVNGVLRSIQRE 111 >gi|229129141|ref|ZP_04258114.1| Ribosomal RNA small subunit methyltransferase B [Bacillus cereus BDRD-Cer4] gi|228654378|gb|EEL10243.1| Ribosomal RNA small subunit methyltransferase B [Bacillus cereus BDRD-Cer4] Length = 429 Score = 77.8 bits (191), Expect = 4e-13, Method: Composition-based stats. Identities = 23/104 (22%), Positives = 43/104 (41%), Gaps = 5/104 (4%) Query: 53 TELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGV 112 L +S D+ I++G + R+ +D + L +K ++ + +LR + Sbjct: 13 NNLIEKSAIDRKDIGLLTEIVYGTIQRRDTLDYYLQPFLKKK-----VEAWVRVLLRLSL 67 Query: 113 LELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRK 156 ++I VP I E V IA + +N VL + R+ Sbjct: 68 YQMIYLDRVPERAAIHEAVEIAKRRGHKGIAGMVNGVLRSIQRE 111 >gi|87301561|ref|ZP_01084401.1| transcription antitermination protein NusB [Synechococcus sp. WH 5701] gi|87283778|gb|EAQ75732.1| transcription antitermination protein NusB [Synechococcus sp. WH 5701] Length = 204 Score = 77.8 bits (191), Expect = 5e-13, Method: Composition-based stats. Identities = 19/80 (23%), Positives = 35/80 (43%), Gaps = 2/80 (2%) Query: 74 HGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCI 133 V+ + +D + + + E W RL I ILR ++L P V +E V + Sbjct: 122 RAVLQDRDALDSRLDAVM-EGWRLGRLPRIDRDILRLAAVDL-HTFGTPAPVACNEAVEL 179 Query: 134 AHDFFYGDEPKFINAVLDKV 153 A+ + + IN +L ++ Sbjct: 180 ANRYSDDQGRRMINGILRRL 199 >gi|228960081|ref|ZP_04121745.1| Ribosomal RNA small subunit methyltransferase B [Bacillus thuringiensis serovar pakistani str. T13001] gi|229047552|ref|ZP_04193142.1| Ribosomal RNA small subunit methyltransferase B [Bacillus cereus AH676] gi|229146436|ref|ZP_04274807.1| Ribosomal RNA small subunit methyltransferase B [Bacillus cereus BDRD-ST24] gi|229152064|ref|ZP_04280259.1| Ribosomal RNA small subunit methyltransferase B [Bacillus cereus m1550] gi|229192034|ref|ZP_04319004.1| Ribosomal RNA small subunit methyltransferase B [Bacillus cereus ATCC 10876] gi|228591585|gb|EEK49434.1| Ribosomal RNA small subunit methyltransferase B [Bacillus cereus ATCC 10876] gi|228631413|gb|EEK88047.1| Ribosomal RNA small subunit methyltransferase B [Bacillus cereus m1550] gi|228637069|gb|EEK93528.1| Ribosomal RNA small subunit methyltransferase B [Bacillus cereus BDRD-ST24] gi|228723799|gb|EEL75154.1| Ribosomal RNA small subunit methyltransferase B [Bacillus cereus AH676] gi|228799597|gb|EEM46550.1| Ribosomal RNA small subunit methyltransferase B [Bacillus thuringiensis serovar pakistani str. T13001] Length = 429 Score = 77.8 bits (191), Expect = 5e-13, Method: Composition-based stats. Identities = 23/104 (22%), Positives = 43/104 (41%), Gaps = 5/104 (4%) Query: 53 TELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGV 112 L +S D+ I++G + R+ +D + L +K ++ + +LR + Sbjct: 13 NNLIEKSAIDRKDIGLLTEIVYGTIQRRDTLDYYLQPFLKKK-----VEAWVRVLLRLSL 67 Query: 113 LELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRK 156 ++I VP I E V IA + +N VL + R+ Sbjct: 68 YQMIYLDRVPERAAIHEAVEIAKRRGHKGIAGMVNGVLRSIQRE 111 >gi|228940953|ref|ZP_04103512.1| Ribosomal RNA small subunit methyltransferase B [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228973882|ref|ZP_04134458.1| Ribosomal RNA small subunit methyltransferase B [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228980472|ref|ZP_04140782.1| Ribosomal RNA small subunit methyltransferase B [Bacillus thuringiensis Bt407] gi|228779292|gb|EEM27549.1| Ribosomal RNA small subunit methyltransferase B [Bacillus thuringiensis Bt407] gi|228785907|gb|EEM33910.1| Ribosomal RNA small subunit methyltransferase B [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228818789|gb|EEM64855.1| Ribosomal RNA small subunit methyltransferase B [Bacillus thuringiensis serovar berliner ATCC 10792] Length = 429 Score = 77.8 bits (191), Expect = 5e-13, Method: Composition-based stats. Identities = 23/104 (22%), Positives = 43/104 (41%), Gaps = 5/104 (4%) Query: 53 TELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGV 112 L +S D+ I++G + R+ +D + L +K ++ + +LR + Sbjct: 13 NNLIEKSAIDRKDIGLLTEIVYGTIQRRDTLDYYLQPFLKKK-----VEAWVRVLLRLSL 67 Query: 113 LELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRK 156 ++I VP I E V IA + +N VL + R+ Sbjct: 68 YQMIYLDRVPERAAIHEAVEIAKRRGHKGIAGMVNGVLRSIQRE 111 >gi|228966815|ref|ZP_04127859.1| Ribosomal RNA small subunit methyltransferase B [Bacillus thuringiensis serovar sotto str. T04001] gi|228792914|gb|EEM40472.1| Ribosomal RNA small subunit methyltransferase B [Bacillus thuringiensis serovar sotto str. T04001] Length = 429 Score = 77.8 bits (191), Expect = 5e-13, Method: Composition-based stats. Identities = 23/104 (22%), Positives = 43/104 (41%), Gaps = 5/104 (4%) Query: 53 TELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGV 112 L +S D+ I++G + R+ +D + L +K ++ + +LR + Sbjct: 13 NNLIEKSAIDRKDIGLLTEIVYGTIQRRDTLDYYLQPFLKKK-----VEAWVRVLLRLSL 67 Query: 113 LELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRK 156 ++I VP I E V IA + +N VL + R+ Sbjct: 68 YQMIYLDRVPERAAIHEAVEIAKRRGHKGIAGMVNGVLRSIQRE 111 >gi|229180141|ref|ZP_04307485.1| Ribosomal RNA small subunit methyltransferase B [Bacillus cereus 172560W] gi|228603350|gb|EEK60827.1| Ribosomal RNA small subunit methyltransferase B [Bacillus cereus 172560W] Length = 429 Score = 77.8 bits (191), Expect = 5e-13, Method: Composition-based stats. Identities = 23/104 (22%), Positives = 43/104 (41%), Gaps = 5/104 (4%) Query: 53 TELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGV 112 L +S D+ I++G + R+ +D + L +K ++ + +LR + Sbjct: 13 NNLIEKSTIDRKDIGLLTEIVYGTIQRRDTLDYYLQPFLKKK-----VEAWVRVLLRLSL 67 Query: 113 LELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRK 156 ++I VP I E V IA + +N VL + R+ Sbjct: 68 YQMIYLDRVPERAAIHEAVEIAKRRGHKGIAGMVNGVLRSIQRE 111 >gi|228909690|ref|ZP_04073513.1| Ribosomal RNA small subunit methyltransferase B [Bacillus thuringiensis IBL 200] gi|228849979|gb|EEM94810.1| Ribosomal RNA small subunit methyltransferase B [Bacillus thuringiensis IBL 200] Length = 429 Score = 77.8 bits (191), Expect = 5e-13, Method: Composition-based stats. Identities = 23/104 (22%), Positives = 43/104 (41%), Gaps = 5/104 (4%) Query: 53 TELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGV 112 L +S D+ I++G + R+ +D + L +K ++ + +LR + Sbjct: 13 NNLIEKSAIDRKDIGLLTEIVYGTIQRRDTLDYYLQPFLKKK-----VEAWVRVLLRLSL 67 Query: 113 LELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRK 156 ++I VP I E V IA + +N VL + R+ Sbjct: 68 YQMIYLDRVPERAAIHEAVEIAKRRGHKGIAGMVNGVLRSIQRE 111 >gi|223043738|ref|ZP_03613781.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus capitis SK14] gi|222442835|gb|EEE48937.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus capitis SK14] Length = 435 Score = 77.8 bits (191), Expect = 5e-13, Method: Composition-based stats. Identities = 23/115 (20%), Positives = 44/115 (38%), Gaps = 11/115 (9%) Query: 46 TYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLT---EKWSFSRLDM 102 Y E+ ++ VD F +++G + RK +D ++ + + W Sbjct: 21 AYSNLKINEVLSSNIIADVDRNLFTELVYGTIKRKYTLDYILKPFVKTKIKGW------- 73 Query: 103 ILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKE 157 + +L + + + VP II+E V IA +N +L + R E Sbjct: 74 -VRQLLWMSIYQYVYLDKVPDHAIINEAVDIAKQRGGHHNGNIVNGILRSMMRSE 127 >gi|312111726|ref|YP_003990042.1| sun protein [Geobacillus sp. Y4.1MC1] gi|311216827|gb|ADP75431.1| sun protein [Geobacillus sp. Y4.1MC1] Length = 447 Score = 77.8 bits (191), Expect = 5e-13, Method: Composition-based stats. Identities = 24/137 (17%), Positives = 49/137 (35%), Gaps = 14/137 (10%) Query: 20 RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79 R A++ L + E E Y + D+ I++G + R Sbjct: 7 REVALETL-----------LAVEEKEAYSNLLLNNMIETHRLSERDVRLLTEIVYGTIQR 55 Query: 80 KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139 + +D ++ L + R + +LR + +++ +P I E V IA + Sbjct: 56 RDTLDYYLAPFLKKARKLERW---VRVLLRLTLYQVLYLDRIPDRAAIFEAVEIAKKRGH 112 Query: 140 GDEPKFINAVLDKVSRK 156 +N V+ + R+ Sbjct: 113 QGIASLVNGVMRAILRQ 129 >gi|239826566|ref|YP_002949190.1| sun protein [Geobacillus sp. WCH70] gi|239806859|gb|ACS23924.1| sun protein [Geobacillus sp. WCH70] Length = 447 Score = 77.8 bits (191), Expect = 5e-13, Method: Composition-based stats. Identities = 24/137 (17%), Positives = 50/137 (36%), Gaps = 14/137 (10%) Query: 20 RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79 R A++ L + E E Y ++ D+ I++G + R Sbjct: 7 REVALETL-----------LAVEEKEAYSNLLLNKMIETHRLSERDVRLLTEIVYGTIQR 55 Query: 80 KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139 + +D ++ L + R + +LR + +++ +P I E V IA + Sbjct: 56 RDTLDYYLTPFLKKARKLERW---VRVLLRLTLYQVLYLDRIPDRAAIFEAVEIAKKRGH 112 Query: 140 GDEPKFINAVLDKVSRK 156 +N V+ + R+ Sbjct: 113 QGVASLVNGVMRAIQRQ 129 >gi|253702184|ref|YP_003023373.1| sun protein [Geobacter sp. M21] gi|251777034|gb|ACT19615.1| sun protein [Geobacter sp. M21] Length = 448 Score = 77.8 bits (191), Expect = 5e-13, Method: Composition-based stats. Identities = 33/139 (23%), Positives = 55/139 (39%), Gaps = 14/139 (10%) Query: 20 RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79 R AA L I E D EL + + D +++GV+ R Sbjct: 7 RRAAFDIL----------LRIEKEKSFADILIDHELSKD-IIKGADRGLLTELVYGVLRR 55 Query: 80 KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139 + +D +IS + +L++ + +LR G+ + VPV ++E V +A + Sbjct: 56 QGTLDYIISQFSKQ--RPEKLELFVRLLLRLGIYQCFFLDRVPVSAAVNETVNLAKEL-A 112 Query: 140 GDEPKFINAVLDKVSRKEE 158 FINAVL R + Sbjct: 113 PRASGFINAVLRNADRGRD 131 >gi|295399764|ref|ZP_06809745.1| sun protein [Geobacillus thermoglucosidasius C56-YS93] gi|294978167|gb|EFG53764.1| sun protein [Geobacillus thermoglucosidasius C56-YS93] Length = 447 Score = 77.4 bits (190), Expect = 5e-13, Method: Composition-based stats. Identities = 24/137 (17%), Positives = 49/137 (35%), Gaps = 14/137 (10%) Query: 20 RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79 R A++ L + E E Y + D+ I++G + R Sbjct: 7 REVALETL-----------LAVEEKEAYSNLLLNNMIETHRLSERDVRLLTEIVYGTIQR 55 Query: 80 KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139 + +D ++ L + R + +LR + +++ +P I E V IA + Sbjct: 56 RDTLDYYLAPFLKKARKLERW---VRVLLRLTLYQVLYLDRIPDRAAIFEAVEIAKKRGH 112 Query: 140 GDEPKFINAVLDKVSRK 156 +N V+ + R+ Sbjct: 113 QGIASLVNGVMRAILRQ 129 >gi|228902369|ref|ZP_04066525.1| Ribosomal RNA small subunit methyltransferase B [Bacillus thuringiensis IBL 4222] gi|228857267|gb|EEN01771.1| Ribosomal RNA small subunit methyltransferase B [Bacillus thuringiensis IBL 4222] Length = 429 Score = 77.4 bits (190), Expect = 5e-13, Method: Composition-based stats. Identities = 23/104 (22%), Positives = 43/104 (41%), Gaps = 5/104 (4%) Query: 53 TELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGV 112 L +S D+ I++G + R+ +D + L +K ++ + +LR + Sbjct: 13 NNLIEKSAIDRKDIGLLTEIVYGTIQRRDTLDYYLQPFLKKK-----VEAWVRVLLRLSL 67 Query: 113 LELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRK 156 ++I VP I E V IA + +N VL + R+ Sbjct: 68 YQMIYLDRVPERAAIHEAVEIAKRRGHKGIAGMVNGVLRSIQRE 111 >gi|225847985|ref|YP_002728148.1| transcription antitermination factor NusB [Sulfurihydrogenibium azorense Az-Fu1] gi|225644070|gb|ACN99120.1| transcription antitermination factor NusB [Sulfurihydrogenibium azorense Az-Fu1] Length = 159 Score = 77.4 bits (190), Expect = 5e-13, Method: Composition-based stats. Identities = 33/156 (21%), Positives = 67/156 (42%), Gaps = 21/156 (13%) Query: 10 LKLSHR--RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLE 67 +K S + + AR ++ Y D G +I+ EY + + ++ Sbjct: 1 MKQSIKNIQRQARELLLKVFYTFDQKGEPLEDILKEYTNLKEISPEVIN----------- 49 Query: 68 WFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVP----- 122 + + II ++K +D +I S L EKW F RL I ++L+ + + ++ Sbjct: 50 YAKEIISFFNEKKDKVDEMIKSHL-EKWRFERLGYIEKALLKIAITDFLKLKEKGREENF 108 Query: 123 -VEVIISEYVCIAHDF-FYGDEPKFINAVLDKVSRK 156 ++ II + + + + KF+N +L +V R+ Sbjct: 109 MIKRIILDTLDLVECYTGSKKSVKFVNGILGRVVRE 144 >gi|331091584|ref|ZP_08340420.1| ribosomal RNA small subunit methyltransferase B [Lachnospiraceae bacterium 2_1_46FAA] gi|330403611|gb|EGG83167.1| ribosomal RNA small subunit methyltransferase B [Lachnospiraceae bacterium 2_1_46FAA] Length = 449 Score = 77.4 bits (190), Expect = 6e-13, Method: Composition-based stats. Identities = 25/120 (20%), Positives = 48/120 (40%), Gaps = 6/120 (5%) Query: 39 EIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFS 98 EI E L+ + + ++ G ++ ID +I+ K + Sbjct: 17 EITKEGGYSHIVLRNTLEKYQYLDKKERAFITRVVEGTLEHLIEIDYIINQF--SKVKVN 74 Query: 99 RLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA--HDFFYGDEPKFINAVLDKVSRK 156 ++ ++ +I+R V ++ SVP + +E V +A FF F+N VL + R Sbjct: 75 KMKPVIRTIIRNSVYQIKYMDSVPNSAVCNEAVKLAEKKGFFQLK--GFVNGVLRNIDRN 132 >gi|73666920|ref|YP_302936.1| hypothetical protein Ecaj_0291 [Ehrlichia canis str. Jake] gi|72394061|gb|AAZ68338.1| hypothetical protein Ecaj_0291 [Ehrlichia canis str. Jake] Length = 148 Score = 77.4 bits (190), Expect = 6e-13, Method: Composition-based stats. Identities = 33/101 (32%), Positives = 55/101 (54%), Gaps = 1/101 (0%) Query: 53 TELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGV 112 E+ + +D + I++ ++ I+ I++ L EKWS R+++I SI++ V Sbjct: 19 YEMKEVLDLIQIDNQLLIKIMNTMLLTFNTINSTIATFLNEKWSIDRINLISLSIIKTAV 78 Query: 113 LELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKV 153 ELI C + +II+EYV IA E FINA+L++V Sbjct: 79 CELI-CSNTDAVIIINEYVNIASHILEKTEVNFINAILNQV 118 >gi|302671346|ref|YP_003831306.1| rRNA small subunit methyltransferase B Sun [Butyrivibrio proteoclasticus B316] gi|302395819|gb|ADL34724.1| rRNA small subunit methyltransferase B Sun [Butyrivibrio proteoclasticus B316] Length = 450 Score = 77.4 bits (190), Expect = 6e-13, Method: Composition-based stats. Identities = 30/141 (21%), Positives = 55/141 (39%), Gaps = 16/141 (11%) Query: 20 RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79 R + L + D G ++ + DT D + + + G ++R Sbjct: 5 REIILNILIEYDRDGNRKPSLLKDTLEKYDYLDT----------RDKSFIKRVTEGCLER 54 Query: 80 KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA--HDF 137 ID +I S K ++ + +++R +++ SVP +E V +A H F Sbjct: 55 NIQIDYIIDSY--AKTPVRQMQPFIRALMRMSTYQIMFMDSVPDSAACNEAVKLAAKHKF 112 Query: 138 FYGDEPKFINAVLDKVSRKEE 158 F+N VL VSR ++ Sbjct: 113 AGLK--GFVNGVLRNVSRGKD 131 >gi|256383931|gb|ACU78501.1| transcription antitermination factor NusB [Mycoplasma mycoides subsp. capri str. GM12] gi|256384763|gb|ACU79332.1| transcription antitermination factor NusB [Mycoplasma mycoides subsp. capri str. GM12] gi|296455225|gb|ADH21460.1| transcription antitermination factor NusB [synthetic Mycoplasma mycoides JCVI-syn1.0] Length = 132 Score = 77.4 bits (190), Expect = 6e-13, Method: Composition-based stats. Identities = 29/136 (21%), Positives = 58/136 (42%), Gaps = 14/136 (10%) Query: 20 RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79 R +Q Y+ ++ S I + LD + D+ + I + + Sbjct: 11 RKLLIQTFYKYQLLNASIDYIHQDI----------LDDVQNINNKDVLFE---IEQIAKK 57 Query: 80 KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139 + + I+ ++ W + R+ ++ +IL G E++ + P V I+E V + Sbjct: 58 QTDLINHININVSSSWKWDRIPAVIRAILIVGTYEILYT-NTPKPVTINEMVKYVKEIEP 116 Query: 140 GDEPKFINAVLDKVSR 155 + KF+NAVLDK+ + Sbjct: 117 DFDYKFVNAVLDKLVK 132 >gi|302872122|ref|YP_003840758.1| sun protein [Caldicellulosiruptor obsidiansis OB47] gi|302574981|gb|ADL42772.1| sun protein [Caldicellulosiruptor obsidiansis OB47] Length = 423 Score = 77.4 bits (190), Expect = 6e-13, Method: Composition-based stats. Identities = 24/105 (22%), Positives = 42/105 (40%), Gaps = 5/105 (4%) Query: 54 ELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVL 113 E + + D F ++HGV+ K ID I+ + R+ +ILR Sbjct: 19 EKFHQKLKNEKDRALFVELVHGVLRYKNLIDYYINFVTKKGVKDKRI----LNILRVATY 74 Query: 114 ELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEE 158 EL+ +P ++E +A F+NA+L + R + Sbjct: 75 ELLFLEKIPEYATVNEACEVASKIS-PHLKAFVNAILRNIIRNKN 118 >gi|164687800|ref|ZP_02211828.1| hypothetical protein CLOBAR_01444 [Clostridium bartlettii DSM 16795] gi|164603075|gb|EDQ96540.1| hypothetical protein CLOBAR_01444 [Clostridium bartlettii DSM 16795] Length = 441 Score = 77.4 bits (190), Expect = 6e-13, Method: Composition-based stats. Identities = 33/141 (23%), Positives = 65/141 (46%), Gaps = 14/141 (9%) Query: 18 IARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVM 77 +R A + L+ I+ + I+++ D LD + D + II+GV+ Sbjct: 2 KSRNLAYKVLFDIEKNQNYSNMAINKH-----FKDCNLD------NRDRGFATEIIYGVV 50 Query: 78 DRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDF 137 + K ++D +I K ++L++ + +LR G+ +++ SV ++E V + Sbjct: 51 ENKIYLDYIIDKL--SKIKSNKLNLKVKILLRMGIYQILFLDSVSDYAAVNETVNLTKKL 108 Query: 138 FYGDEPKFINAVLDKVSRKEE 158 F+NAVL V R++E Sbjct: 109 -DNRSAGFVNAVLRNVIRQKE 128 >gi|322386005|ref|ZP_08059645.1| RNA methyltransferase Sun [Streptococcus cristatus ATCC 51100] gi|321269988|gb|EFX52908.1| RNA methyltransferase Sun [Streptococcus cristatus ATCC 51100] Length = 440 Score = 77.4 bits (190), Expect = 6e-13, Method: Composition-based stats. Identities = 33/160 (20%), Positives = 67/160 (41%), Gaps = 21/160 (13%) Query: 10 LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF 69 + L ++ AR A++ L E+ E Y A + +S D Sbjct: 1 MNLESKQKRARELALEIL----------EEVFEE-GAYSNIALNKALKQSALSSADKSLV 49 Query: 70 RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISE 129 +++G + RK ++ ++ + ++ +LD L +L + +++ +P +++E Sbjct: 50 TELVYGTVARKISLEWQLAHFVEDR---DKLDAWLYILLELSLYQMLYLDKIPQHAVVNE 106 Query: 130 YVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRSGCVSAIT 169 V IA G K++NA+L K+ +R G IT Sbjct: 107 AVEIAKGRKRG-SEKYVNAILRKI------ERDGAADPIT 139 >gi|296331149|ref|ZP_06873623.1| RNA-binding Sun protein [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305674305|ref|YP_003865977.1| RNA-binding Sun protein; 16S rRNA m5C967 methyltransferase, S-adenosyl-L-methionine-dependent [Bacillus subtilis subsp. spizizenii str. W23] gi|296151793|gb|EFG92668.1| RNA-binding Sun protein [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305412549|gb|ADM37668.1| RNA-binding Sun protein; 16S rRNA m5C967 methyltransferase, S-adenosyl-L-methionine-dependent [Bacillus subtilis subsp. spizizenii str. W23] Length = 447 Score = 77.4 bits (190), Expect = 6e-13, Method: Composition-based stats. Identities = 22/142 (15%), Positives = 52/142 (36%), Gaps = 14/142 (9%) Query: 15 RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74 ++ R A++AL +++ + ++ +D D +++ Sbjct: 2 KKNSVRDIALEALIKLEQNQAYSNLLLKSVIKSNELSDQ-----------DRALLTELVY 50 Query: 75 GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134 G + K +D ++ + + + +LR + ++ +P I E V IA Sbjct: 51 GTLQNKIALDYMLKPFINKPQKVK---PWVIQLLRLSLYQMEYLEKIPDRAAIHEAVEIA 107 Query: 135 HDFFYGDEPKFINAVLDKVSRK 156 + F+N VL + R+ Sbjct: 108 KIRGHKGIASFVNGVLRSIQRE 129 >gi|47096543|ref|ZP_00234133.1| sun protein [Listeria monocytogenes str. 1/2a F6854] gi|254899481|ref|ZP_05259405.1| hypothetical protein LmonJ_06694 [Listeria monocytogenes J0161] gi|254912380|ref|ZP_05262392.1| sun protein [Listeria monocytogenes J2818] gi|254936707|ref|ZP_05268404.1| sun protein [Listeria monocytogenes F6900] gi|47015075|gb|EAL06018.1| sun protein [Listeria monocytogenes str. 1/2a F6854] gi|258609304|gb|EEW21912.1| sun protein [Listeria monocytogenes F6900] gi|293590362|gb|EFF98696.1| sun protein [Listeria monocytogenes J2818] Length = 444 Score = 77.4 bits (190), Expect = 6e-13, Method: Composition-based stats. Identities = 27/119 (22%), Positives = 48/119 (40%), Gaps = 11/119 (9%) Query: 41 ISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTE---KWSF 97 I ++Y + + +D +++G RK +D ++ L + W Sbjct: 18 IENNQSYSHLLINDALKKQKLNPLDKGLLTELVYGTTQRKITLDYYLAPFLNKEPDNW-- 75 Query: 98 SRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRK 156 + ++LR V +L VP I++E IA + + KF+N VL V RK Sbjct: 76 ------VKNLLRMSVYQLTYLDKVPEHAILNEAGDIAKNMGHQGVTKFVNGVLRNVIRK 128 >gi|313637331|gb|EFS02816.1| ribosomal RNA small subunit methyltransferase B [Listeria seeligeri FSL S4-171] Length = 446 Score = 77.4 bits (190), Expect = 6e-13, Method: Composition-based stats. Identities = 30/146 (20%), Positives = 55/146 (37%), Gaps = 22/146 (15%) Query: 14 HRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVII 73 ++ R A++ + I ++Y + + +D ++ Sbjct: 2 KKQKTVREIALELI-----------IKIENNQSYSHLLINDALKKQKLNPLDKGLLTELV 50 Query: 74 HGVMDRKQHIDLLISSCLTE---KWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEY 130 +G RK +D ++ L + W + ++LR V +L VP I++E Sbjct: 51 YGTTQRKITLDYYLAPFLNKEPDNW--------VKNLLRMSVYQLTFLDKVPEHAILNEA 102 Query: 131 VCIAHDFFYGDEPKFINAVLDKVSRK 156 IA D + KF+N VL V RK Sbjct: 103 GDIAKDLGHQGVTKFVNGVLRNVIRK 128 >gi|312134888|ref|YP_004002226.1| sun protein [Caldicellulosiruptor owensensis OL] gi|311774939|gb|ADQ04426.1| sun protein [Caldicellulosiruptor owensensis OL] Length = 423 Score = 77.4 bits (190), Expect = 6e-13, Method: Composition-based stats. Identities = 27/110 (24%), Positives = 46/110 (41%), Gaps = 6/110 (5%) Query: 54 ELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVL 113 E + + D F ++HGV+ K ID I+ + R+ +ILR Sbjct: 19 EKFHQKLKNEKDRALFVELVHGVLRYKNLIDYYINFVTKKGVKDKRI----LNILRVATY 74 Query: 114 ELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSR-KEEIKRS 162 EL+ +P ++E +A F+NA+L + R K +I+ S Sbjct: 75 ELLFLEKIPEYATVNEACEVASKIS-PHLKAFVNAILRNIIRNKNQIEES 123 >gi|16803862|ref|NP_465347.1| hypothetical protein lmo1822 [Listeria monocytogenes EGD-e] gi|224501376|ref|ZP_03669683.1| hypothetical protein LmonFR_02455 [Listeria monocytogenes FSL R2-561] gi|254829183|ref|ZP_05233870.1| sun protein [Listeria monocytogenes FSL N3-165] gi|254831576|ref|ZP_05236231.1| hypothetical protein Lmon1_09493 [Listeria monocytogenes 10403S] gi|16411276|emb|CAC99900.1| lmo1822 [Listeria monocytogenes EGD-e] gi|258601593|gb|EEW14918.1| sun protein [Listeria monocytogenes FSL N3-165] Length = 444 Score = 77.4 bits (190), Expect = 7e-13, Method: Composition-based stats. Identities = 27/119 (22%), Positives = 48/119 (40%), Gaps = 11/119 (9%) Query: 41 ISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTE---KWSF 97 I ++Y + + +D +++G RK +D ++ L + W Sbjct: 18 IENNQSYSHLLINDALKKQKLNPLDKGLLTELVYGTTQRKITLDYYLAPFLNKEPDNW-- 75 Query: 98 SRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRK 156 + ++LR V +L VP I++E IA + + KF+N VL V RK Sbjct: 76 ------VKNLLRMSVYQLTYLDKVPEHAILNEAGDIAKNMGHQGVTKFVNGVLRNVIRK 128 >gi|157412347|ref|YP_001483213.1| transcription antitermination protein NusB [Prochlorococcus marinus str. MIT 9215] gi|157386922|gb|ABV49627.1| Antitermination protein NusB [Prochlorococcus marinus str. MIT 9215] Length = 208 Score = 77.4 bits (190), Expect = 7e-13, Method: Composition-based stats. Identities = 21/78 (26%), Positives = 34/78 (43%), Gaps = 2/78 (2%) Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135 +++ + ID I + W RL I ILR I + P+ V E V +A+ Sbjct: 127 IINNLKSIDSDIDQVMD-GWRLKRLPRIDRDILRLA-YVDINFLNTPIAVACDEAVNLAN 184 Query: 136 DFFYGDEPKFINAVLDKV 153 + +FIN VL ++ Sbjct: 185 KYSDLQGRRFINGVLRRL 202 >gi|284802268|ref|YP_003414133.1| hypothetical protein LM5578_2024 [Listeria monocytogenes 08-5578] gi|284995410|ref|YP_003417178.1| hypothetical protein LM5923_1975 [Listeria monocytogenes 08-5923] gi|284057830|gb|ADB68771.1| hypothetical protein LM5578_2024 [Listeria monocytogenes 08-5578] gi|284060877|gb|ADB71816.1| hypothetical protein LM5923_1975 [Listeria monocytogenes 08-5923] Length = 444 Score = 77.4 bits (190), Expect = 7e-13, Method: Composition-based stats. Identities = 27/119 (22%), Positives = 48/119 (40%), Gaps = 11/119 (9%) Query: 41 ISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTE---KWSF 97 I ++Y + + +D +++G RK +D ++ L + W Sbjct: 18 IENNQSYSHLLINDALKKQKLNPLDKGLLTELVYGTTQRKITLDYYLAPFLNKEPDNW-- 75 Query: 98 SRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRK 156 + ++LR V +L VP I++E IA + + KF+N VL V RK Sbjct: 76 ------VKNLLRMSVYQLTYLDKVPEHAILNEAGDIAKNMGHQGVTKFVNGVLRNVIRK 128 >gi|116873257|ref|YP_850038.1| sun protein [Listeria welshimeri serovar 6b str. SLCC5334] gi|116742135|emb|CAK21259.1| sun protein [Listeria welshimeri serovar 6b str. SLCC5334] Length = 444 Score = 77.4 bits (190), Expect = 7e-13, Method: Composition-based stats. Identities = 28/119 (23%), Positives = 48/119 (40%), Gaps = 11/119 (9%) Query: 41 ISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTE---KWSF 97 I ++Y + + +D +++G RK +D ++ L + W Sbjct: 18 IENNQSYSHLLINDALKKQKLNPLDKGLLTELVYGTTQRKITLDYYLAPFLNKEPDNW-- 75 Query: 98 SRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRK 156 + ++LR V +L VP I++E IA D + KF+N VL V RK Sbjct: 76 ------VKNLLRMSVYQLTFLDKVPEHAILNEAGDIAKDLGHQGVTKFVNGVLRNVIRK 128 >gi|229086418|ref|ZP_04218594.1| Ribosomal RNA small subunit methyltransferase B [Bacillus cereus Rock3-44] gi|228696934|gb|EEL49743.1| Ribosomal RNA small subunit methyltransferase B [Bacillus cereus Rock3-44] Length = 431 Score = 77.4 bits (190), Expect = 7e-13, Method: Composition-based stats. Identities = 23/104 (22%), Positives = 44/104 (42%), Gaps = 5/104 (4%) Query: 53 TELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGV 112 L +S D+ I++G + R+ +D + L +K ++ + +LR + Sbjct: 15 NNLIEKSEIDRKDIGLLTEIVYGTIQRRDTLDYYLQPFLKKK-----VEAWVKVLLRLSL 69 Query: 113 LELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRK 156 ++I VP +I E V IA + +N VL + R+ Sbjct: 70 YQMIYLDRVPERAVIHEAVEIAKRRGHKGIAGMVNGVLRSIQRE 113 >gi|254526109|ref|ZP_05138161.1| antitermination protein NusB [Prochlorococcus marinus str. MIT 9202] gi|221537533|gb|EEE39986.1| antitermination protein NusB [Prochlorococcus marinus str. MIT 9202] Length = 208 Score = 77.4 bits (190), Expect = 7e-13, Method: Composition-based stats. Identities = 21/78 (26%), Positives = 34/78 (43%), Gaps = 2/78 (2%) Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135 +++ + ID I + W RL I ILR I + P+ V E V +A+ Sbjct: 127 IINNLKSIDSDIDQVMD-GWRLKRLPRIDRDILRLA-YVDINFLNTPIAVACDEAVNLAN 184 Query: 136 DFFYGDEPKFINAVLDKV 153 + +FIN VL ++ Sbjct: 185 KYSDLQGRRFINGVLRRL 202 >gi|312793229|ref|YP_004026152.1| sun protein [Caldicellulosiruptor kristjanssonii 177R1B] gi|312180369|gb|ADQ40539.1| sun protein [Caldicellulosiruptor kristjanssonii 177R1B] Length = 410 Score = 77.1 bits (189), Expect = 7e-13, Method: Composition-based stats. Identities = 28/110 (25%), Positives = 46/110 (41%), Gaps = 6/110 (5%) Query: 54 ELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVL 113 E + + D F ++HGV+ K ID I+ + R+ +ILR Sbjct: 6 EKFHQKLKNEKDRALFVELVHGVLRYKNLIDYYINFVAKKGVKDRRI----LNILRVATY 61 Query: 114 ELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSR-KEEIKRS 162 EL+ +P ++E IA F+NA+L + R K +I+ S Sbjct: 62 ELLFLEKIPEYATVNEACEIASKIS-PHLKAFVNAILRNIIRNKNQIEES 110 >gi|138894694|ref|YP_001125147.1| 16S rRNA m(5)C 967 methyltransferase [Geobacillus thermodenitrificans NG80-2] gi|196247686|ref|ZP_03146388.1| sun protein [Geobacillus sp. G11MC16] gi|134266207|gb|ABO66402.1| 16S rRNA m(5)C 967 methyltransferase [Geobacillus thermodenitrificans NG80-2] gi|196212470|gb|EDY07227.1| sun protein [Geobacillus sp. G11MC16] Length = 444 Score = 77.1 bits (189), Expect = 7e-13, Method: Composition-based stats. Identities = 27/137 (19%), Positives = 49/137 (35%), Gaps = 14/137 (10%) Query: 20 RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79 R A+ L I+ G Y + D I++G + R Sbjct: 4 RELALDTLLAIEQKG-----------AYSHLQLNNAIQKGRLDGRDAALLTEIVYGTIQR 52 Query: 80 KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139 + +D ++ L + RL+ + +LR + +++ VP I E V IA + Sbjct: 53 RDTLDYYLTPFLRKA---RRLEQWVRVLLRLTLYQMVYLDRVPDHAAIFEAVEIAKRRGH 109 Query: 140 GDEPKFINAVLDKVSRK 156 +N VL + R+ Sbjct: 110 RGIASLVNGVLRTIGRE 126 >gi|72383173|ref|YP_292528.1| transcription antitermination protein NusB [Prochlorococcus marinus str. NATL2A] gi|72003023|gb|AAZ58825.1| antitermination protein NusB [Prochlorococcus marinus str. NATL2A] Length = 208 Score = 77.1 bits (189), Expect = 8e-13, Method: Composition-based stats. Identities = 29/125 (23%), Positives = 55/125 (44%), Gaps = 6/125 (4%) Query: 33 IGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVI----IHGVMDRKQHIDLLIS 88 + + E C +++ + VD + R + + V++++ ID + Sbjct: 76 SQNHLKTCLIDSENILNCLSESIELPRLLALVDQKEIRELALRRVDLVIEKQDEIDHKLD 135 Query: 89 SCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINA 148 S + E W RL I ILR ++LI+ + P+ V +E V +A+ + + IN Sbjct: 136 SVM-EGWRLKRLPRIDSDILRLAWVDLIDF-NTPMAVTCNEAVNLANRYSDEQGRRMING 193 Query: 149 VLDKV 153 VL K+ Sbjct: 194 VLRKL 198 >gi|226224425|ref|YP_002758532.1| RNA-binding Sun protein [Listeria monocytogenes Clip81459] gi|225876887|emb|CAS05596.1| Putative RNA-binding Sun protein [Listeria monocytogenes serotype 4b str. CLIP 80459] Length = 444 Score = 77.1 bits (189), Expect = 8e-13, Method: Composition-based stats. Identities = 28/119 (23%), Positives = 48/119 (40%), Gaps = 11/119 (9%) Query: 41 ISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTE---KWSF 97 I ++Y + + +D +++G RK +D ++ L + W Sbjct: 18 IENNQSYSHLLINDALKKQKLNPLDKGLLTELVYGTTQRKITLDYYLAPFLNKEPDNW-- 75 Query: 98 SRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRK 156 + ++LR V +L VP I++E IA D + KF+N VL V RK Sbjct: 76 ------VKNLLRMSVYQLTFLDKVPEHAILNEAGDIAKDLGHQGVTKFVNGVLRNVIRK 128 >gi|255522012|ref|ZP_05389249.1| sun protein [Listeria monocytogenes FSL J1-175] Length = 444 Score = 77.1 bits (189), Expect = 8e-13, Method: Composition-based stats. Identities = 28/119 (23%), Positives = 48/119 (40%), Gaps = 11/119 (9%) Query: 41 ISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTE---KWSF 97 I ++Y + + +D +++G RK +D ++ L + W Sbjct: 18 IENNQSYSHLLINDALKKQKLNPLDKGLLTELVYGTTQRKITLDYYLAPFLNKEPDNW-- 75 Query: 98 SRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRK 156 + ++LR V +L VP I++E IA D + KF+N VL V RK Sbjct: 76 ------VKNLLRMSVYQLTFLDKVPEHAILNEAGDIAKDLGHQGVTKFVNGVLRNVIRK 128 >gi|291450278|ref|ZP_06589668.1| RNA-binding Sun protein [Streptomyces albus J1074] gi|291353227|gb|EFE80129.1| RNA-binding Sun protein [Streptomyces albus J1074] Length = 338 Score = 77.1 bits (189), Expect = 8e-13, Method: Composition-based stats. Identities = 29/158 (18%), Positives = 59/158 (37%), Gaps = 13/158 (8%) Query: 1 MTIQDNKKDLKL-----SHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTEL 55 MT Q +++ K ++ R+ A +AL + + Sbjct: 1 MTDQPSRRPRKTGKPYRRPKKDPVRILAFEAL-----RAVDERDAYANLVLPALLRKARE 55 Query: 56 DVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLEL 115 D + D +++G + R+ D +I++C+ +D + +L G +L Sbjct: 56 DHPDTFEARDAALATELVYGTLRRQGTYDAIIAACVDR--PLREVDPPVLDVLSLGAHQL 113 Query: 116 IECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKV 153 + +P +S V +A KF+NAVL ++ Sbjct: 114 LGTR-IPSHAAVSATVELARVVLGDGRAKFVNAVLRRI 150 >gi|253682518|ref|ZP_04863315.1| ribosomal RNA small subunit methyltransferase B [Clostridium botulinum D str. 1873] gi|253562230|gb|EES91682.1| ribosomal RNA small subunit methyltransferase B [Clostridium botulinum D str. 1873] Length = 443 Score = 77.1 bits (189), Expect = 8e-13, Method: Composition-based stats. Identities = 22/96 (22%), Positives = 41/96 (42%), Gaps = 2/96 (2%) Query: 63 HVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVP 122 D I++G + K ID ++++ L + +D + +ILR + ++ +P Sbjct: 37 EKDKGLITEIVYGTIKYKYTIDAILNTYLKKG--TKSVDSYILNILRITIYQIKYLDKIP 94 Query: 123 VEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEE 158 ++E V IA E K +N VL R + Sbjct: 95 NFAAVNEAVNIAKKHKSIRESKLVNGVLRNYLRNLD 130 >gi|328881116|emb|CCA54355.1| Ribosomal RNA small subunit methyltransferase B [Streptomyces venezuelae ATCC 10712] Length = 470 Score = 77.1 bits (189), Expect = 8e-13, Method: Composition-based stats. Identities = 32/159 (20%), Positives = 65/159 (40%), Gaps = 12/159 (7%) Query: 1 MTIQDNKKDLKLSHR--RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVE 58 M+ Q ++ K R + R+ A +AL +D ++ + + Sbjct: 1 MSEQARRRPHKPYRRPQKDPVRMLAFEALRAVDERDAYANLVLPPLLR-------KAREK 53 Query: 59 SVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIEC 118 + D +++G + R+ D +IS+C+ +D + +L G +L+ Sbjct: 54 GDFDGRDAALATELVYGTLRRQGTYDAIISACVDR--PLREVDPPVLDVLALGAHQLLGT 111 Query: 119 HSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKE 157 +P +S V +A KF+NAVL K+S+++ Sbjct: 112 R-IPTHAAVSASVELARVVLGDGRAKFVNAVLRKISQQD 149 >gi|46908054|ref|YP_014443.1| sun protein [Listeria monocytogenes serotype 4b str. F2365] gi|47093059|ref|ZP_00230837.1| sun protein [Listeria monocytogenes str. 4b H7858] gi|254826136|ref|ZP_05231137.1| sun protein [Listeria monocytogenes FSL J1-194] gi|254852729|ref|ZP_05242077.1| sun protein [Listeria monocytogenes FSL R2-503] gi|254933294|ref|ZP_05266653.1| sun protein [Listeria monocytogenes HPB2262] gi|300763865|ref|ZP_07073862.1| sun protein [Listeria monocytogenes FSL N1-017] gi|46881324|gb|AAT04620.1| sun protein [Listeria monocytogenes serotype 4b str. F2365] gi|47018560|gb|EAL09315.1| sun protein [Listeria monocytogenes str. 4b H7858] gi|258606052|gb|EEW18660.1| sun protein [Listeria monocytogenes FSL R2-503] gi|293584854|gb|EFF96886.1| sun protein [Listeria monocytogenes HPB2262] gi|293595376|gb|EFG03137.1| sun protein [Listeria monocytogenes FSL J1-194] gi|300515601|gb|EFK42651.1| sun protein [Listeria monocytogenes FSL N1-017] gi|332312263|gb|EGJ25358.1| Ribosomal RNA small subunit methyltransferase B [Listeria monocytogenes str. Scott A] Length = 444 Score = 77.1 bits (189), Expect = 8e-13, Method: Composition-based stats. Identities = 28/119 (23%), Positives = 48/119 (40%), Gaps = 11/119 (9%) Query: 41 ISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTE---KWSF 97 I ++Y + + +D +++G RK +D ++ L + W Sbjct: 18 IENNQSYSHLLINDALKKQKLNPLDKGLLTELVYGTTQRKITLDYYLAPFLNKEPDNW-- 75 Query: 98 SRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRK 156 + ++LR V +L VP I++E IA D + KF+N VL V RK Sbjct: 76 ------VKNLLRMSVYQLTFLDKVPEHAILNEAGDIAKDLGHQGVTKFVNGVLRNVIRK 128 >gi|315303726|ref|ZP_07874237.1| ribosomal RNA small subunit methyltransferase B [Listeria ivanovii FSL F6-596] gi|313627903|gb|EFR96525.1| ribosomal RNA small subunit methyltransferase B [Listeria ivanovii FSL F6-596] Length = 446 Score = 77.1 bits (189), Expect = 8e-13, Method: Composition-based stats. Identities = 30/146 (20%), Positives = 55/146 (37%), Gaps = 22/146 (15%) Query: 14 HRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVII 73 ++ R A++ + I ++Y + + +D ++ Sbjct: 2 KKQKTVREIALELI-----------IKIENNQSYSHLLINDALKKQKLNPLDKGLLTELV 50 Query: 74 HGVMDRKQHIDLLISSCLTE---KWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEY 130 +G RK +D ++ L + W + ++LR V +L VP I++E Sbjct: 51 YGTTQRKITLDYYLAPFLNKEPDNW--------VKNLLRMSVYQLTFLDKVPEHAILNEA 102 Query: 131 VCIAHDFFYGDEPKFINAVLDKVSRK 156 IA D + KF+N VL V RK Sbjct: 103 GDIAKDLGHQGVTKFVNGVLRNVIRK 128 >gi|217964025|ref|YP_002349703.1| ribosomal RNA small subunit methyltransferase B [Listeria monocytogenes HCC23] gi|217333295|gb|ACK39089.1| ribosomal RNA small subunit methyltransferase B [Listeria monocytogenes HCC23] gi|307571404|emb|CAR84583.1| tRNA and rRNA cytosine-C5-methylase, putative [Listeria monocytogenes L99] Length = 444 Score = 77.1 bits (189), Expect = 8e-13, Method: Composition-based stats. Identities = 28/119 (23%), Positives = 48/119 (40%), Gaps = 11/119 (9%) Query: 41 ISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTE---KWSF 97 I ++Y + + +D +++G RK +D ++ L + W Sbjct: 18 IENNQSYSHLLINDALKKQKLNPLDKGLLTELVYGTTQRKITLDYYLAPFLNKEPDNW-- 75 Query: 98 SRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRK 156 + ++LR V +L VP I++E IA D + KF+N VL V RK Sbjct: 76 ------VKNLLRMSVYQLTFLDKVPEHAILNEAGDIAKDLGHQGVTKFVNGVLRNVIRK 128 >gi|95928560|ref|ZP_01311307.1| sun protein [Desulfuromonas acetoxidans DSM 684] gi|95135350|gb|EAT17002.1| sun protein [Desulfuromonas acetoxidans DSM 684] Length = 479 Score = 77.1 bits (189), Expect = 8e-13, Method: Composition-based stats. Identities = 24/140 (17%), Positives = 48/140 (34%), Gaps = 13/140 (9%) Query: 19 ARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMD 78 AR A L + E D L+ D +++GV+ Sbjct: 29 ARRIAFDVL-----------TRVDEGGYSDLVLDAALEANPGLDPRDRALATELVYGVLR 77 Query: 79 RKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFF 138 R+ ++D ++ + + +L + +LR G+ +L +P ++ V +A Sbjct: 78 RRGNLDFILKAYSRQ--PLKKLQPKVLRLLRLGIYQLCYLDRIPDRAVVHSMVELARRCG 135 Query: 139 YGDEPKFINAVLDKVSRKEE 158 +N VL R+ Sbjct: 136 LERVSGLVNGVLRSYLREPN 155 >gi|290893049|ref|ZP_06556038.1| sun protein [Listeria monocytogenes FSL J2-071] gi|290557409|gb|EFD90934.1| sun protein [Listeria monocytogenes FSL J2-071] gi|313608142|gb|EFR84195.1| ribosomal RNA small subunit methyltransferase B [Listeria monocytogenes FSL F2-208] Length = 444 Score = 77.1 bits (189), Expect = 9e-13, Method: Composition-based stats. Identities = 28/119 (23%), Positives = 48/119 (40%), Gaps = 11/119 (9%) Query: 41 ISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTE---KWSF 97 I ++Y + + +D +++G RK +D ++ L + W Sbjct: 18 IENNQSYSHLLINDALKKQKLNPLDKGLLTELVYGTTQRKITLDYYLAPFLNKEPDNW-- 75 Query: 98 SRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRK 156 + ++LR V +L VP I++E IA D + KF+N VL V RK Sbjct: 76 ------VKNLLRMSVYQLTFLDKVPEHAILNEAGDIAKDLGHQGVTKFVNGVLRNVIRK 128 >gi|154497982|ref|ZP_02036360.1| hypothetical protein BACCAP_01962 [Bacteroides capillosus ATCC 29799] gi|150272972|gb|EDN00129.1| hypothetical protein BACCAP_01962 [Bacteroides capillosus ATCC 29799] Length = 447 Score = 77.1 bits (189), Expect = 9e-13, Method: Composition-based stats. Identities = 26/143 (18%), Positives = 50/143 (34%), Gaps = 14/143 (9%) Query: 17 GIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGV 76 AR A+ AL + G + + + E+ D + GV Sbjct: 6 QTARETALLALSACERQGAWSDGFLKKTLR-----------EAGLDSRDAALATRLCFGV 54 Query: 77 MDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHD 136 + + +D I T ++++ + + LR GV ++ +P ++E V + Sbjct: 55 LQNRLLLDFYIGKFSTT--RPEKMEIKVRNALRLGVYQMAFMTKIPHNAAVNESVELTKK 112 Query: 137 FF-YGDEPKFINAVLDKVSRKEE 158 +N VL VSR + Sbjct: 113 HCKNPRAAGMVNGVLRNVSRNID 135 >gi|148241109|ref|YP_001226266.1| transcription antitermination protein NusB [Synechococcus sp. RCC307] gi|147849419|emb|CAK26913.1| Transcription termination factor, NusB [Synechococcus sp. RCC307] Length = 203 Score = 77.1 bits (189), Expect = 9e-13, Method: Composition-based stats. Identities = 24/77 (31%), Positives = 36/77 (46%), Gaps = 2/77 (2%) Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135 V + + +D I + E W +RL I ILR V+E+ E P V +E V +AH Sbjct: 122 VAEAQPQLDQGID-AVMEGWRLTRLPRIDQDILRLAVVEIDEFQ-TPAAVACNEAVELAH 179 Query: 136 DFFYGDEPKFINAVLDK 152 + + IN VL + Sbjct: 180 RYSDEAGRRMINGVLRR 196 >gi|89098704|ref|ZP_01171586.1| sun protein [Bacillus sp. NRRL B-14911] gi|89086666|gb|EAR65785.1| sun protein [Bacillus sp. NRRL B-14911] Length = 448 Score = 77.1 bits (189), Expect = 9e-13, Method: Composition-based stats. Identities = 27/137 (19%), Positives = 49/137 (35%), Gaps = 14/137 (10%) Query: 20 RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79 R AAV+ L E I + ++Y ++ D+ +++G + R Sbjct: 7 REAAVELL-----------EAIEKNQSYSNLLLNSSIKKNDISSKDVGLLTELVYGTLQR 55 Query: 80 KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139 K +D + L + +LR ++I +P I E V IA + Sbjct: 56 KMTLDYQMEPFLKNPKKLE---SWVRQLLRITFYQMIYLDKIPDRAAIYEAVEIAKRKGH 112 Query: 140 GDEPKFINAVLDKVSRK 156 +N VL + R+ Sbjct: 113 KGISGMVNGVLRSLQRQ 129 >gi|314933391|ref|ZP_07840756.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus caprae C87] gi|313653541|gb|EFS17298.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus caprae C87] Length = 435 Score = 76.7 bits (188), Expect = 9e-13, Method: Composition-based stats. Identities = 24/126 (19%), Positives = 49/126 (38%), Gaps = 12/126 (9%) Query: 35 CSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLT-- 92 + I++E Y E+ ++ VD F +++G + RK +D ++ + Sbjct: 11 ETIQHILNE-GAYSNLKINEVLSSNIIADVDRNLFTELVYGTIKRKYTLDYILKPFVKTK 69 Query: 93 -EKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLD 151 + W + +L + + + VP II+E V IA +N +L Sbjct: 70 IKGW--------VRQLLWMSIYQYVYLDKVPDHAIINEAVDIAKQRGGHHNGNIVNGILR 121 Query: 152 KVSRKE 157 + R + Sbjct: 122 SLMRSD 127 >gi|293192811|ref|ZP_06609706.1| ribosomal RNA small subunit methyltransferase B [Actinomyces odontolyticus F0309] gi|292820058|gb|EFF79056.1| ribosomal RNA small subunit methyltransferase B [Actinomyces odontolyticus F0309] Length = 490 Score = 76.7 bits (188), Expect = 1e-12, Method: Composition-based stats. Identities = 35/169 (20%), Positives = 68/169 (40%), Gaps = 21/169 (12%) Query: 12 LSHRR--------GIA---RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESV 60 +S RR A R A L++++ G I+ + + + Sbjct: 1 MSERRYADGYRKLRKADEPRRIAYDVLHEVETQGAFANIILPKALR-------QARRDGH 53 Query: 61 YLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHS 120 + D + ++HG + +D +IS + + LD +LR G +L++ Sbjct: 54 FSDRDAAFTSELVHGTLRAIGRLDWVISRHIDR--PLADLDPRALVVLRMGTHQLLDMR- 110 Query: 121 VPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRSGCVSAIT 169 VP +S V +A + +F+NAVL ++R++ +R + AI Sbjct: 111 VPDHAAVSATVDVAREHLTDGPVRFVNAVLRSITREDPSEREAAMDAIA 159 >gi|225574499|ref|ZP_03783109.1| hypothetical protein RUMHYD_02576 [Blautia hydrogenotrophica DSM 10507] gi|225038286|gb|EEG48532.1| hypothetical protein RUMHYD_02576 [Blautia hydrogenotrophica DSM 10507] Length = 446 Score = 76.7 bits (188), Expect = 1e-12, Method: Composition-based stats. Identities = 29/140 (20%), Positives = 59/140 (42%), Gaps = 14/140 (10%) Query: 20 RLAAVQALYQIDIIGCSTTEIISEYET-YRFCADTELDVESVYLHVDLEWFRVIIHGVMD 78 R + L ++ G + +I E T ++F E + + G ++ Sbjct: 4 RELILGILLAVNEEGEPSHRVIREVLTKHQFLPKQE-----------RAFITRVCEGTLE 52 Query: 79 RKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFF 138 + ID +++ K ++ ++ ILR+ V +L SVP + +E V +A Sbjct: 53 YQITIDYILNHF--SKVKTDKMKPVIREILRSSVYQLKYMDSVPDSAVCNEAVKLAQKKG 110 Query: 139 YGDEPKFINAVLDKVSRKEE 158 + + F+N VL ++R+ E Sbjct: 111 FYNLKPFVNGVLRTIAREME 130 >gi|313623277|gb|EFR93521.1| ribosomal RNA small subunit methyltransferase B [Listeria innocua FSL J1-023] Length = 446 Score = 76.7 bits (188), Expect = 1e-12, Method: Composition-based stats. Identities = 28/119 (23%), Positives = 48/119 (40%), Gaps = 11/119 (9%) Query: 41 ISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTE---KWSF 97 I ++Y + + +D +++G RK +D ++ L + W Sbjct: 18 IENNQSYSHLLINDALKKQKLNPLDKGLLTELVYGTTQRKITLDYYLAPFLNKEPDNW-- 75 Query: 98 SRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRK 156 + ++LR V +L VP I++E IA D + KF+N VL V RK Sbjct: 76 ------VKNLLRMSVYQLTFLDKVPEHAILNEAGDIAKDLGHQGVTKFVNGVLRNVIRK 128 >gi|255282547|ref|ZP_05347102.1| ribosomal RNA small subunit methyltransferase B [Bryantella formatexigens DSM 14469] gi|255266840|gb|EET60045.1| ribosomal RNA small subunit methyltransferase B [Bryantella formatexigens DSM 14469] Length = 453 Score = 76.7 bits (188), Expect = 1e-12, Method: Composition-based stats. Identities = 20/99 (20%), Positives = 37/99 (37%), Gaps = 6/99 (6%) Query: 59 SVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIEC 118 D + + G M+ ID ++ T K + + +ILR + ++ Sbjct: 39 QYLEKRDRAFISRTVEGTMENMIQIDYILEQFSTVK--VQNMKPAIRNILRMSIYQMQYM 96 Query: 119 HSVPVEVIISEYVCIA--HDFFYGDEPKFINAVLDKVSR 155 VP +++E V + F+ F+N VL R Sbjct: 97 DGVPHAAVVNEAVKLTQKKGFYTLK--GFVNGVLRAAER 133 >gi|16801002|ref|NP_471270.1| hypothetical protein lin1936 [Listeria innocua Clip11262] gi|16414437|emb|CAC97166.1| lin1936 [Listeria innocua Clip11262] Length = 446 Score = 76.7 bits (188), Expect = 1e-12, Method: Composition-based stats. Identities = 28/119 (23%), Positives = 48/119 (40%), Gaps = 11/119 (9%) Query: 41 ISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTE---KWSF 97 I ++Y + + +D +++G RK +D ++ L + W Sbjct: 18 IENNQSYSHLLINDALKKQKLNPLDKGLLTELVYGTTQRKITLDYYLAPFLNKEPDNW-- 75 Query: 98 SRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRK 156 + ++LR V +L VP I++E IA D + KF+N VL V RK Sbjct: 76 ------VKNLLRMSVYQLTFLDKVPEHAILNEAGDIAKDLGHQGVTKFVNGVLRNVIRK 128 >gi|313618293|gb|EFR90347.1| ribosomal RNA small subunit methyltransferase B [Listeria innocua FSL S4-378] Length = 446 Score = 76.7 bits (188), Expect = 1e-12, Method: Composition-based stats. Identities = 28/119 (23%), Positives = 48/119 (40%), Gaps = 11/119 (9%) Query: 41 ISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTE---KWSF 97 I ++Y + + +D +++G RK +D ++ L + W Sbjct: 18 IENNQSYSHLLINDALKKQKLNPLDKGLLTELVYGTTQRKITLDYYLAPFLNKEPDNW-- 75 Query: 98 SRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRK 156 + ++LR V +L VP I++E IA D + KF+N VL V RK Sbjct: 76 ------VKNLLRMSVYQLTFLDKVPEHAILNEAGDIAKDLGHQGVTKFVNGVLRNVIRK 128 >gi|154508791|ref|ZP_02044433.1| hypothetical protein ACTODO_01300 [Actinomyces odontolyticus ATCC 17982] gi|153798425|gb|EDN80845.1| hypothetical protein ACTODO_01300 [Actinomyces odontolyticus ATCC 17982] Length = 490 Score = 76.7 bits (188), Expect = 1e-12, Method: Composition-based stats. Identities = 36/169 (21%), Positives = 69/169 (40%), Gaps = 21/169 (12%) Query: 12 LSHRR--------GIA---RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESV 60 +S RR A R A L++++ G T I+ + + + Sbjct: 1 MSERRYADGYRKLRKADEPRRIAYDVLHEVETQGAFTNIILPKALR-------QARRDGH 53 Query: 61 YLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHS 120 + D + ++HG + +D +IS + + LD +LR G +L++ Sbjct: 54 FSDRDAAFTSELVHGTLRAIGRLDWVISRHIDR--PLADLDPRALVVLRMGAHQLLDMR- 110 Query: 121 VPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRSGCVSAIT 169 VP +S V +A + +F+NAVL ++R++ +R + AI Sbjct: 111 VPDHAAVSATVDVAREHLTDGPVRFVNAVLRSITREDPSEREAAMDAIA 159 >gi|168334695|ref|ZP_02692831.1| sun protein [Epulopiscium sp. 'N.t. morphotype B'] Length = 229 Score = 76.7 bits (188), Expect = 1e-12, Method: Composition-based stats. Identities = 28/138 (20%), Positives = 50/138 (36%), Gaps = 15/138 (10%) Query: 20 RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79 R V AL ++ E + +L++ D I G + Sbjct: 5 REIVVDAL----------VKVEKEGAYLQLVLKKDLEILES---RDRGLATEIATGTLKY 51 Query: 80 KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139 + ID +I+ S++ + +++R V +L VP I+E V +A + Sbjct: 52 QIAIDYIINQ--VSSIKVSKMKPFIRNLMRISVYQLRYLDKVPAHAAINEAVKLAKSRGF 109 Query: 140 GDEPKFINAVLDKVSRKE 157 KF+N VL + R Sbjct: 110 AGLSKFVNGVLRSIERSN 127 >gi|148238346|ref|YP_001223733.1| transcription antitermination protein NusB [Synechococcus sp. WH 7803] gi|147846885|emb|CAK22436.1| Transcription termination factor, NusB [Synechococcus sp. WH 7803] Length = 210 Score = 76.7 bits (188), Expect = 1e-12, Method: Composition-based stats. Identities = 24/78 (30%), Positives = 38/78 (48%), Gaps = 2/78 (2%) Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135 V+D + +D + S + E W SRL I ILR V++L P V +E V +A+ Sbjct: 126 VLDARPSLDDQLDSVM-EGWRLSRLPRIDRDILRLAVVDLQSMK-TPASVACNEAVELAN 183 Query: 136 DFFYGDEPKFINAVLDKV 153 + + IN VL ++ Sbjct: 184 RYSDEQGRRMINGVLRRL 201 >gi|226509228|ref|NP_001150841.1| LOC100284474 [Zea mays] gi|195642298|gb|ACG40617.1| RNA binding protein [Zea mays] Length = 280 Score = 76.7 bits (188), Expect = 1e-12, Method: Composition-based stats. Identities = 30/138 (21%), Positives = 53/138 (38%), Gaps = 19/138 (13%) Query: 34 GCSTTEIISEYETYRFCADTELDVES-----------VYLHVDLEWFRVIIHGVM----D 78 G E+ +E E + + E D + VY + L R ++ V Sbjct: 136 GGGPLEVGTEEEAEKLTSQNEKDSANEADVLSAPPKLVYNNFVLRLSRELLVAVASGWDK 195 Query: 79 RKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFF 138 + ID +I ++ +R+ + IL + E+ P +V+I+E V +A F Sbjct: 196 HVEIIDKIIPQAWKDE-PVARI--LELCILHIAMAEMT-SKGTPHKVVINEAVDLAKRFC 251 Query: 139 YGDEPKFINAVLDKVSRK 156 G P+ IN L + Sbjct: 252 DGGAPRVINGCLRTFVKD 269 >gi|194476880|ref|YP_002049059.1| transcription antitermination protein NusB [Paulinella chromatophora] gi|171191887|gb|ACB42849.1| transcription antitermination protein NusB [Paulinella chromatophora] Length = 203 Score = 76.7 bits (188), Expect = 1e-12, Method: Composition-based stats. Identities = 20/81 (24%), Positives = 37/81 (45%), Gaps = 2/81 (2%) Query: 73 IHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVC 132 + V+ ++ ID + + E W RL I ILR ++L + P V +E V Sbjct: 121 VRFVLSNREKIDQRLD-AVMENWRLIRLPRIDRDILRLASVDL-DRLGTPAAVACNEAVE 178 Query: 133 IAHDFFYGDEPKFINAVLDKV 153 +A+ + + IN +L ++ Sbjct: 179 MANRYSDEQGRRMINGILRRL 199 >gi|153809822|ref|ZP_01962490.1| hypothetical protein RUMOBE_00203 [Ruminococcus obeum ATCC 29174] gi|149834000|gb|EDM89080.1| hypothetical protein RUMOBE_00203 [Ruminococcus obeum ATCC 29174] Length = 450 Score = 76.7 bits (188), Expect = 1e-12, Method: Composition-based stats. Identities = 30/139 (21%), Positives = 53/139 (38%), Gaps = 12/139 (8%) Query: 20 RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79 R ++ L QID E E L + + + G ++ Sbjct: 8 REMIMEILLQID----------EEGEHSHIAIRNALSKYQFLPKQERAFITRVCEGTLEY 57 Query: 80 KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139 + ID +I S K ++ + ILR+ V +L VP + +E V +A + Sbjct: 58 RILIDYIIDSF--SKIPVDKMKPPIREILRSAVYQLKFMDRVPDSAVCNEAVKLAQKKGF 115 Query: 140 GDEPKFINAVLDKVSRKEE 158 + F+N VL V+R+ + Sbjct: 116 YNLKPFVNGVLRTVARQMD 134 >gi|21219974|ref|NP_625753.1| putative Sun-family protein [Streptomyces coelicolor A3(2)] gi|289772815|ref|ZP_06532193.1| RNA-binding Sun protein [Streptomyces lividans TK24] gi|7209232|emb|CAB76894.1| conserved hypothetical Sun-family protein SCL6.29c [Streptomyces coelicolor A3(2)] gi|289703014|gb|EFD70443.1| RNA-binding Sun protein [Streptomyces lividans TK24] Length = 475 Score = 76.7 bits (188), Expect = 1e-12, Method: Composition-based stats. Identities = 33/161 (20%), Positives = 61/161 (37%), Gaps = 11/161 (6%) Query: 1 MTIQDNKKDLKLSHRRGI----ARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELD 56 M+ Q + R R+ A +AL +D ++ E + Sbjct: 1 MSEQPRRPRKTGKPYRRPQKDPVRMLAFEALRAVDERDAYANLVLPPLLRKA----REKE 56 Query: 57 VESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELI 116 + D +++G + R+ D +I+ C+ +D + +L GV +L+ Sbjct: 57 GPEKFDARDAALATELVYGTLRRQGTYDAIIADCVDR--PLREVDPPVLDVLSLGVHQLL 114 Query: 117 ECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKE 157 +P +S V +A KF+NAVL KV+R + Sbjct: 115 GTR-IPSHAAVSASVELARVVLGDGRAKFVNAVLRKVARDD 154 >gi|220931836|ref|YP_002508744.1| sun protein [Halothermothrix orenii H 168] gi|219993146|gb|ACL69749.1| sun protein [Halothermothrix orenii H 168] Length = 440 Score = 76.7 bits (188), Expect = 1e-12, Method: Composition-based stats. Identities = 30/142 (21%), Positives = 60/142 (42%), Gaps = 15/142 (10%) Query: 17 GIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGV 76 I+R A++ L +ID G + ++++ ++ V D + +++GV Sbjct: 2 SISRKVAIKVLIEID-KGAYSNLVLNK------------ELNKVSDKRDRAFITELVYGV 48 Query: 77 MDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHD 136 + +K+ +D ++S ++D + S LR + ++ SVP + E V Sbjct: 49 LRQKKRLDYMLSCFSKR--PLRKMDNEVLSALRVALYQIEYTDSVPARAAVYETVEALKS 106 Query: 137 FFYGDEPKFINAVLDKVSRKEE 158 F KF N VL R ++ Sbjct: 107 FTGHGAVKFTNGVLRSYLRNKD 128 >gi|329767015|ref|ZP_08258543.1| ribosomal RNA small subunit methyltransferase B [Gemella haemolysans M341] gi|328837740|gb|EGF87365.1| ribosomal RNA small subunit methyltransferase B [Gemella haemolysans M341] Length = 441 Score = 76.3 bits (187), Expect = 1e-12, Method: Composition-based stats. Identities = 25/137 (18%), Positives = 51/137 (37%), Gaps = 16/137 (11%) Query: 19 ARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMD 78 AR A + LY I + +++Y + D + +++G + Sbjct: 6 ARQIAYEVLYTIIQEDGYSNITLNKYFNQYKIQEQ-----------DKRFISEVVYGTIK 54 Query: 79 RKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFF 138 K +++ ++ S R+ + IL + +L+ P II E V ++ Sbjct: 55 NKIYLEHILKSYSKG-----RVKPKVKVILSMSIYQLLYMDKTPNFAIIDEAVKLSKKVA 109 Query: 139 YGDEPKFINAVLDKVSR 155 KF+N +L + R Sbjct: 110 GNITGKFVNGILRNIER 126 >gi|254519240|ref|ZP_05131296.1| sun protein [Clostridium sp. 7_2_43FAA] gi|226912989|gb|EEH98190.1| sun protein [Clostridium sp. 7_2_43FAA] Length = 439 Score = 76.3 bits (187), Expect = 1e-12, Method: Composition-based stats. Identities = 26/141 (18%), Positives = 53/141 (37%), Gaps = 15/141 (10%) Query: 18 IARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVM 77 +R A Q + ++ E EL+ D I++G + Sbjct: 2 KSRKLARQII----------QRVLEEGAYSNLVLSNELN-NIDIEDKDKGLITEIVYGTL 50 Query: 78 DRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDF 137 RK+ +D+LI + + + +D + +ILR + ++ +P +E V A + Sbjct: 51 RRKRTLDVLIGNFVK---DINLIDTTVLNILRVAIYQMYFLDKIPEYAACNEAVEEAKEV 107 Query: 138 FYGDEPKFINAVLDKVSRKEE 158 K +N +L + E+ Sbjct: 108 SLEAS-KLVNGILRNYIKDEK 127 >gi|238916656|ref|YP_002930173.1| Sun protein [Eubacterium eligens ATCC 27750] gi|238872016|gb|ACR71726.1| Sun protein [Eubacterium eligens ATCC 27750] Length = 434 Score = 76.3 bits (187), Expect = 1e-12, Method: Composition-based stats. Identities = 20/122 (16%), Positives = 47/122 (38%), Gaps = 2/122 (1%) Query: 37 TTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWS 96 EI + E + L + + G ++ + +D +I K Sbjct: 15 LMEINEKGEFSHLLINNALTKYQYLDKNKRAFISRLSLGTIENRIELDYIIDQY--SKTP 72 Query: 97 FSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRK 156 ++ ++ +I V ++I ++P + +E V +A + F+N VL ++R Sbjct: 73 VRKMKPLIRNICEMSVYQIIYMDNIPDSAVCNEAVKLATKRGFTGLKGFVNGVLRNIARN 132 Query: 157 EE 158 ++ Sbjct: 133 KD 134 >gi|297570244|ref|YP_003691588.1| sun protein [Desulfurivibrio alkaliphilus AHT2] gi|296926159|gb|ADH86969.1| sun protein [Desulfurivibrio alkaliphilus AHT2] Length = 501 Score = 76.3 bits (187), Expect = 1e-12, Method: Composition-based stats. Identities = 25/141 (17%), Positives = 60/141 (42%), Gaps = 19/141 (13%) Query: 20 RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79 R A++ L Q + ++++EY R+ +D D + R +++ V+ R Sbjct: 19 RQVALEILLQQEQQNRPLDQVLAEYPARRWPSDR----------RDRQLVRALVYEVLRR 68 Query: 80 KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139 + +D +++ +++ + + LR G+ +L+ +P I E + Sbjct: 69 RGFLDHVVARYAKH--PLAKMKPLTLAALRLGLAQLLYFDRLPPAAAIDETI---RALKA 123 Query: 140 GDEPK----FINAVLDKVSRK 156 +P+ F+N +L +R+ Sbjct: 124 ARQPRWITGFVNGLLRNAARE 144 >gi|291484126|dbj|BAI85201.1| hypothetical protein BSNT_02587 [Bacillus subtilis subsp. natto BEST195] Length = 447 Score = 76.3 bits (187), Expect = 1e-12, Method: Composition-based stats. Identities = 22/142 (15%), Positives = 52/142 (36%), Gaps = 14/142 (9%) Query: 15 RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74 ++ R A++AL +++ + ++ +D D +++ Sbjct: 2 KKTSVRDIALEALIKLEQNQAYSNLLLKSVIKSNELSDQ-----------DRGLLTELVY 50 Query: 75 GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134 G + K +D ++ + + + +LR + ++ +P I E V IA Sbjct: 51 GTLQNKIALDYMLKPFINKPQKVK---PWVIQLLRLSLYQMEYLEKIPDRAAIHEAVEIA 107 Query: 135 HDFFYGDEPKFINAVLDKVSRK 156 + F+N VL + R+ Sbjct: 108 KIRGHKGIASFVNGVLRSIQRE 129 >gi|321315340|ref|YP_004207627.1| 16S rRNA methyltransferase B [Bacillus subtilis BSn5] gi|320021614|gb|ADV96600.1| 16S rRNA methyltransferase B [Bacillus subtilis BSn5] Length = 447 Score = 76.3 bits (187), Expect = 1e-12, Method: Composition-based stats. Identities = 22/142 (15%), Positives = 52/142 (36%), Gaps = 14/142 (9%) Query: 15 RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74 ++ R A++AL +++ + ++ +D D +++ Sbjct: 2 KKTSVRDIALEALIKLEQNQAYSNLLLKSVIKSNELSDQ-----------DRGLLTELVY 50 Query: 75 GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134 G + K +D ++ + + + +LR + ++ +P I E V IA Sbjct: 51 GTLQNKIALDYMLKPFINKPQKVK---PWVIQLLRLSLYQMEYLEKIPDRAAIHEAVEIA 107 Query: 135 HDFFYGDEPKFINAVLDKVSRK 156 + F+N VL + R+ Sbjct: 108 KIRGHKGIASFVNGVLRSIQRE 129 >gi|289435165|ref|YP_003465037.1| sun protein [Listeria seeligeri serovar 1/2b str. SLCC3954] gi|289171409|emb|CBH27953.1| sun protein [Listeria seeligeri serovar 1/2b str. SLCC3954] Length = 446 Score = 76.3 bits (187), Expect = 1e-12, Method: Composition-based stats. Identities = 30/146 (20%), Positives = 55/146 (37%), Gaps = 22/146 (15%) Query: 14 HRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVII 73 ++ R A++ + I ++Y + + +D ++ Sbjct: 2 KKQKTVREIALELI-----------IKIENNQSYSHLLINDALKKQKLNLLDKGLLTELV 50 Query: 74 HGVMDRKQHIDLLISSCLTE---KWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEY 130 +G RK +D ++ L + W + ++LR V +L VP I++E Sbjct: 51 YGTTQRKITLDYYLAPFLNKEPDNW--------VKNLLRMSVYQLTFLDKVPEHAILNEA 102 Query: 131 VCIAHDFFYGDEPKFINAVLDKVSRK 156 IA D + KF+N VL V RK Sbjct: 103 GDIAKDLGHQGVTKFVNGVLRNVIRK 128 >gi|229006142|ref|ZP_04163829.1| Ribosomal RNA small subunit methyltransferase B [Bacillus mycoides Rock1-4] gi|228755095|gb|EEM04453.1| Ribosomal RNA small subunit methyltransferase B [Bacillus mycoides Rock1-4] Length = 415 Score = 76.3 bits (187), Expect = 1e-12, Method: Composition-based stats. Identities = 21/100 (21%), Positives = 42/100 (42%), Gaps = 5/100 (5%) Query: 57 VESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELI 116 +S D+ I++G + R+ +D + L +K ++ + +LR + +++ Sbjct: 3 EKSAIDRKDIGLLTEIVYGTIQRRDTLDYYLQPFLRKK-----VEAWVKILLRLSLYQML 57 Query: 117 ECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRK 156 VP I E V IA + +N VL + R+ Sbjct: 58 YLDRVPERAAIHEAVEIAKRRGHKGIAGMVNGVLRSIQRE 97 >gi|254455633|ref|ZP_05069062.1| antitermination protein NusB [Candidatus Pelagibacter sp. HTCC7211] gi|207082635|gb|EDZ60061.1| antitermination protein NusB [Candidatus Pelagibacter sp. HTCC7211] Length = 134 Score = 76.3 bits (187), Expect = 1e-12, Method: Composition-based stats. Identities = 29/123 (23%), Positives = 58/123 (47%), Gaps = 3/123 (2%) Query: 40 IISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSR 99 II + + D LD ++ + I+ G ++R I + + L ++ F Sbjct: 15 IIQKLYGKFYNEDNNLDFPKHRFK---KFIKDIVLGTIERNDLILSELDTKLGNEFVFEN 71 Query: 100 LDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEI 159 LD + +IL+A E + +V + +II EY+ ++ F + K++NA+LD + +K Sbjct: 72 LDKVFQTILKAATYEFLYKPNVSINIIIKEYLNSSNFFLENSQTKYLNALLDNIGKKLRS 131 Query: 160 KRS 162 + Sbjct: 132 NNA 134 >gi|32490464|dbj|BAC79124.1| putative transcription termination protein [Streptomyces griseus] Length = 66 Score = 76.3 bits (187), Expect = 1e-12, Method: Composition-based stats. Identities = 18/41 (43%), Positives = 22/41 (53%) Query: 108 LRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINA 148 LR G ELI P V+I E V +A +F D P F+NA Sbjct: 19 LRLGAYELIWMDGTPDAVVIDEAVQLAKEFSTDDSPSFVNA 59 >gi|228992593|ref|ZP_04152520.1| Ribosomal RNA small subunit methyltransferase B [Bacillus pseudomycoides DSM 12442] gi|228998641|ref|ZP_04158228.1| Ribosomal RNA small subunit methyltransferase B [Bacillus mycoides Rock3-17] gi|228761109|gb|EEM10068.1| Ribosomal RNA small subunit methyltransferase B [Bacillus mycoides Rock3-17] gi|228767227|gb|EEM15863.1| Ribosomal RNA small subunit methyltransferase B [Bacillus pseudomycoides DSM 12442] Length = 415 Score = 76.3 bits (187), Expect = 1e-12, Method: Composition-based stats. Identities = 21/100 (21%), Positives = 42/100 (42%), Gaps = 5/100 (5%) Query: 57 VESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELI 116 +S D+ I++G + R+ +D + L +K ++ + +LR + +++ Sbjct: 3 EKSAIDRKDIGLLTEIVYGTIQRRDTLDYYLQPFLRKK-----VEAWVKILLRLSLYQML 57 Query: 117 ECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRK 156 VP I E V IA + +N VL + R+ Sbjct: 58 YLDRVPERAAIHEAVEIAKRRGHKGIAGMVNGVLRSIQRE 97 >gi|291557813|emb|CBL34930.1| ribosomal RNA small subunit methyltransferase RsmB [Eubacterium siraeum V10Sc8a] Length = 439 Score = 76.3 bits (187), Expect = 2e-12, Method: Composition-based stats. Identities = 31/154 (20%), Positives = 62/154 (40%), Gaps = 13/154 (8%) Query: 17 GIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGV 76 AR + L ++D G + I+ + F ++ D + + +GV Sbjct: 2 KTARQITLDLLIRMDTQGAYSNIILD----HAFT-------QNDADRRDKAFSAALFYGV 50 Query: 77 MDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHD 136 ++R+ +D LI F ++ + ILR G +L+ +SVP ++E V + Sbjct: 51 LERRMTLDYLIRYY--SGIEFDKIKTAVVEILRMGFYQLLFMNSVPDSAAVNESVALCDY 108 Query: 137 FFYGDEPKFINAVLDKVSRKEEIKRSGCVSAITQ 170 ++NA+L R E+ G ++ + Sbjct: 109 CNSTKAKGYVNAILRTFLRNEKQIDYGNLTGEAK 142 >gi|317129258|ref|YP_004095540.1| sun protein [Bacillus cellulosilyticus DSM 2522] gi|315474206|gb|ADU30809.1| sun protein [Bacillus cellulosilyticus DSM 2522] Length = 449 Score = 75.9 bits (186), Expect = 2e-12, Method: Composition-based stats. Identities = 19/117 (16%), Positives = 45/117 (38%), Gaps = 2/117 (1%) Query: 41 ISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRL 100 I + + Y E +S D+ +++G + ++ +D + +L Sbjct: 17 IEKQQAYSHLLLNETIKKSNLNQKDVPLLTELVYGTIQYQKLLDFYLKPFSKR--PLEKL 74 Query: 101 DMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKE 157 + + +LR + +++ +P + E V IA + +N +L + R E Sbjct: 75 EPWVLVLLRLTLYQMVYLDRIPDRAAVHEAVQIAKKRGHQGISGMVNGILRSIQRNE 131 >gi|319649620|ref|ZP_08003776.1| sun protein [Bacillus sp. 2_A_57_CT2] gi|317398782|gb|EFV79464.1| sun protein [Bacillus sp. 2_A_57_CT2] Length = 451 Score = 75.9 bits (186), Expect = 2e-12, Method: Composition-based stats. Identities = 25/142 (17%), Positives = 51/142 (35%), Gaps = 14/142 (9%) Query: 15 RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74 ++ R A++ L E I + ++Y ++ D+ + + Sbjct: 5 KKKNVRETALELL-----------EAIEKNQSYSNLLLNNAIKKNEIDQKDIGLLTELTY 53 Query: 75 GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134 G + R+ +D + L + +LR + +++ +P I E V IA Sbjct: 54 GTLQRRMTLDFYLQPFLAGNKKIE--SWVN-QLLRLTLYQMVFLDKIPDRAAIFEAVEIA 110 Query: 135 HDFFYGDEPKFINAVLDKVSRK 156 + + +N VL V RK Sbjct: 111 KRWGHKGISGMVNGVLRNVQRK 132 >gi|167750828|ref|ZP_02422955.1| hypothetical protein EUBSIR_01811 [Eubacterium siraeum DSM 15702] gi|167656263|gb|EDS00393.1| hypothetical protein EUBSIR_01811 [Eubacterium siraeum DSM 15702] Length = 439 Score = 75.9 bits (186), Expect = 2e-12, Method: Composition-based stats. Identities = 31/154 (20%), Positives = 62/154 (40%), Gaps = 13/154 (8%) Query: 17 GIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGV 76 AR + L ++D G + I+ + F ++ D + + +GV Sbjct: 2 KTARQITLDLLIRMDTQGAYSNIILD----HAFT-------QNDADRRDKAFSAALFYGV 50 Query: 77 MDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHD 136 ++R+ +D LI F ++ + ILR G +L+ +SVP ++E V + Sbjct: 51 LERRMTLDYLIRYY--SGIEFDKIKTAVVEILRMGFYQLLFMNSVPDSAAVNESVALCDY 108 Query: 137 FFYGDEPKFINAVLDKVSRKEEIKRSGCVSAITQ 170 ++NA+L R E+ G ++ + Sbjct: 109 CNSTKAKGYVNAILRTFLRNEKQIDYGNLTGEAK 142 >gi|304404144|ref|ZP_07385806.1| sun protein [Paenibacillus curdlanolyticus YK9] gi|304347122|gb|EFM12954.1| sun protein [Paenibacillus curdlanolyticus YK9] Length = 521 Score = 75.9 bits (186), Expect = 2e-12, Method: Composition-based stats. Identities = 23/141 (16%), Positives = 57/141 (40%), Gaps = 13/141 (9%) Query: 18 IARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVM 77 AR A++AL +I+ + +++ + + D +++G + Sbjct: 66 TAREVALEALVKIEREEAFSNLVLNSALQH-----------AELSRADAGLATELVYGTL 114 Query: 78 DRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDF 137 R+ +D +S+ + +L+ + +LR +L+ +P ++E V IA Sbjct: 115 QRRLSLDHALSALAAKG--LGKLEPWVLQLLRLSAYQLLFLDRIPAHAAVNEAVAIAKRR 172 Query: 138 FYGDEPKFINAVLDKVSRKEE 158 + +N +L + R+ + Sbjct: 173 GHSGISGMVNGMLRNLLRRRD 193 >gi|332976420|gb|EGK13268.1| RNA methyltransferase Sun [Desmospora sp. 8437] Length = 453 Score = 75.9 bits (186), Expect = 2e-12, Method: Composition-based stats. Identities = 29/138 (21%), Positives = 50/138 (36%), Gaps = 13/138 (9%) Query: 19 ARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMD 78 AR A+ L + E Y + S D +++G + Sbjct: 7 ARNVALDVL-----------IAVEERGAYSNLLLNDRLQRSSLSPRDRGLATELVYGTLQ 55 Query: 79 RKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFF 138 RK +D +++ + + LD + +LR G+ +L VP + E V IA Sbjct: 56 RKNTLDWILNKLVRKG--IDTLDPWVRHLLRLGIYQLRYLDRVPSRAAVHETVEIAKARG 113 Query: 139 YGDEPKFINAVLDKVSRK 156 + P +N VL R+ Sbjct: 114 HRGIPGLVNGVLRSYLRR 131 >gi|16329552|ref|NP_440280.1| Fmu and Fmv protein [Synechocystis sp. PCC 6803] gi|2500952|sp|P72943|RSMB_SYNY3 RecName: Full=Ribosomal RNA small subunit methyltransferase B; AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase rsmB gi|1652035|dbj|BAA16960.1| Fmu and Fmv protein [Synechocystis sp. PCC 6803] Length = 446 Score = 75.9 bits (186), Expect = 2e-12, Method: Composition-based stats. Identities = 28/144 (19%), Positives = 53/144 (36%), Gaps = 13/144 (9%) Query: 19 ARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMD 78 AR A L I+ ++Y A + D + +++GV+ Sbjct: 4 ARQLAFLIL-----------RDINRRDSYTDVAIDRALQKHPLSPPDRRFCTELVYGVVR 52 Query: 79 RKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFF 138 R++ +D LI + L I++ G+ +L VP ++ V +A Sbjct: 53 RQRTLDCLIEQLGDR--PIGKQPPDLRRIVQLGLYQLRYLDQVPASAAVNTGVDLAKANG 110 Query: 139 YGDEPKFINAVLDKVSRKEEIKRS 162 K +N +L + R EE ++ Sbjct: 111 LKGLSKVVNGMLRRYQRAEEQGKN 134 >gi|291530595|emb|CBK96180.1| ribosomal RNA small subunit methyltransferase RsmB [Eubacterium siraeum 70/3] Length = 439 Score = 75.9 bits (186), Expect = 2e-12, Method: Composition-based stats. Identities = 31/154 (20%), Positives = 62/154 (40%), Gaps = 13/154 (8%) Query: 17 GIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGV 76 AR + L ++D G + I+ + F ++ D + + +GV Sbjct: 2 KTARQITLDLLIRMDTQGAYSNIILD----HAFT-------QNDADRRDKAFSAALFYGV 50 Query: 77 MDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHD 136 ++R+ +D LI F ++ + ILR G +L+ +SVP ++E V + Sbjct: 51 LERRMTLDYLIRYY--SGIEFDKIKTAVVEILRMGFYQLLFMNSVPDSAAVNESVALCDY 108 Query: 137 FFYGDEPKFINAVLDKVSRKEEIKRSGCVSAITQ 170 ++NA+L R E+ G ++ + Sbjct: 109 CNSTKAKGYVNAILRTFLRNEKQIDYGNLTGEAK 142 >gi|258511305|ref|YP_003184739.1| sun protein [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] gi|257478031|gb|ACV58350.1| sun protein [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] Length = 451 Score = 75.9 bits (186), Expect = 2e-12, Method: Composition-based stats. Identities = 29/139 (20%), Positives = 53/139 (38%), Gaps = 14/139 (10%) Query: 20 RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79 R A QAL +++ G + E + D I +G + R Sbjct: 6 RRRAYQALIRVERDGAFLNAALQEALA-----------GAGVDERDRALATEIAYGTLRR 54 Query: 80 KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139 + +D L+S + S+LD + ILR G ++ + VP ++ V +A Sbjct: 55 QITLDRLLSPLVRR--PMSKLDPEVRVILRMGAYQMTWLNRVPAYAAANDAVELAKRH-R 111 Query: 140 GDEPKFINAVLDKVSRKEE 158 +NAVL + + + + Sbjct: 112 PQAAALVNAVLRRYAERAQ 130 >gi|318042975|ref|ZP_07974931.1| transcription antitermination protein NusB [Synechococcus sp. CB0101] Length = 205 Score = 75.9 bits (186), Expect = 2e-12, Method: Composition-based stats. Identities = 19/80 (23%), Positives = 37/80 (46%), Gaps = 2/80 (2%) Query: 74 HGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCI 133 V+ ++ +D + + E W +RL I ILR +++ + + P V +E V + Sbjct: 124 RAVLRSREDLDQRLD-AVMEGWRLTRLPRIDRDILRLAAVDIEQF-NTPAAVACNEAVEL 181 Query: 134 AHDFFYGDEPKFINAVLDKV 153 A+ + + IN VL + Sbjct: 182 ANRYSDEQGRRMINGVLRRF 201 >gi|260578784|ref|ZP_05846691.1| RNA methyltransferase Sun [Corynebacterium jeikeium ATCC 43734] gi|258603082|gb|EEW16352.1| RNA methyltransferase Sun [Corynebacterium jeikeium ATCC 43734] Length = 513 Score = 75.9 bits (186), Expect = 2e-12, Method: Composition-based stats. Identities = 20/100 (20%), Positives = 40/100 (40%), Gaps = 3/100 (3%) Query: 58 ESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIE 117 E+ D + + +G + + +D +I R+D + LR G +++ Sbjct: 73 EAGIKGRDAAFATELTYGTLRARGLLDAIIEDA--AGRKIERIDSVALDALRLGAYQIL- 129 Query: 118 CHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKE 157 V ++ V + F G F+N VL ++RK+ Sbjct: 130 RTRVENHAAVNTSVELVKAFGAGQASGFVNGVLRALTRKK 169 >gi|222529034|ref|YP_002572916.1| Fmu (Sun) domain-containing protein [Caldicellulosiruptor bescii DSM 6725] gi|222455881|gb|ACM60143.1| Fmu (Sun) domain protein [Caldicellulosiruptor bescii DSM 6725] Length = 406 Score = 75.9 bits (186), Expect = 2e-12, Method: Composition-based stats. Identities = 27/110 (24%), Positives = 46/110 (41%), Gaps = 6/110 (5%) Query: 54 ELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVL 113 E + + D F ++HGV+ K ID I+ + R+ +ILR Sbjct: 2 EKFHQKLKNEKDRALFVELVHGVLRYKSLIDYYINFVAKKGVKDKRI----LNILRVATY 57 Query: 114 ELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSR-KEEIKRS 162 EL+ +P ++E +A F+NA+L + R K +I+ S Sbjct: 58 ELLFLEKIPEYATVNEACEVASKI-NPHLKAFVNAILRNIIRNKNQIEES 106 >gi|228475051|ref|ZP_04059779.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus hominis SK119] gi|314936621|ref|ZP_07843968.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus hominis subsp. hominis C80] gi|228271036|gb|EEK12424.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus hominis SK119] gi|313655240|gb|EFS18985.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus hominis subsp. hominis C80] Length = 435 Score = 75.5 bits (185), Expect = 2e-12, Method: Composition-based stats. Identities = 26/138 (18%), Positives = 53/138 (38%), Gaps = 16/138 (11%) Query: 20 RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79 R A Q S +I+++ Y E+ + VD F +++G + R Sbjct: 6 RDLAFQ----------SIQDILND-NAYSNLKINEVINQYNIATVDKALFTELVYGTIKR 54 Query: 80 KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139 K +D + + +R+ + +L + + + +P II+E V IA Sbjct: 55 KMTLDFYLKPFVK-----TRIKGWVRQLLWMSLYQYVFLDKIPNHAIINEAVNIAKRRGG 109 Query: 140 GDEPKFINAVLDKVSRKE 157 +NA+L + + + Sbjct: 110 QHNGNIVNAILRHIFKSD 127 >gi|15924207|ref|NP_371741.1| RNA-binding Sun protein [Staphylococcus aureus subsp. aureus Mu50] gi|15926800|ref|NP_374333.1| hypothetical protein SA1060 [Staphylococcus aureus subsp. aureus N315] gi|156979538|ref|YP_001441797.1| hypothetical protein SAHV_1207 [Staphylococcus aureus subsp. aureus Mu3] gi|13701017|dbj|BAB42312.1| SA1060 [Staphylococcus aureus subsp. aureus N315] gi|14246987|dbj|BAB57379.1| similar to RNA-binding Sun protein [Staphylococcus aureus subsp. aureus Mu50] gi|156721673|dbj|BAF78090.1| hypothetical protein [Staphylococcus aureus subsp. aureus Mu3] gi|285816899|gb|ADC37386.1| Ribosomal RNA small subunit methyltransferase B [Staphylococcus aureus 04-02981] Length = 461 Score = 75.5 bits (185), Expect = 2e-12, Method: Composition-based stats. Identities = 25/123 (20%), Positives = 50/123 (40%), Gaps = 6/123 (4%) Query: 35 CSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEK 94 + +I++E Y E+ E+ +D F I++G + RK +D + + K Sbjct: 37 DTIQDILNE-GAYSNLRINEVLSENELNAMDKALFTEIVYGTVKRKYTLDFYLKPFVKTK 95 Query: 95 WSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVS 154 + + +L + + + VP II+E V IA + +N +L + Sbjct: 96 -----IKAWVRQLLWMSIYQYVYLDKVPNHAIINEAVEIAKERGGYHNGNVVNGILRTMM 150 Query: 155 RKE 157 R + Sbjct: 151 RSD 153 >gi|297155758|gb|ADI05470.1| RNA-binding Sun protein [Streptomyces bingchenggensis BCW-1] Length = 485 Score = 75.5 bits (185), Expect = 2e-12, Method: Composition-based stats. Identities = 31/160 (19%), Positives = 59/160 (36%), Gaps = 12/160 (7%) Query: 1 MTIQDNKK------DLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTE 54 M+ Q + ++ R+ A +AL +D ++ TE Sbjct: 1 MSPQPGRPRRSAPGKPYRRPKKDPVRILAFEALRAVDERDAYANLVLPPLLRKARQDSTE 60 Query: 55 LDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLE 114 + D +++G + R+ D +I+ C+ +D + +L G + Sbjct: 61 AKP---FDARDAALATELVYGTLRRQGTYDAIIAECVDR--PLREVDPPVLDVLSLGAHQ 115 Query: 115 LIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVS 154 L+ +P +S V +A KF+NAVL KV+ Sbjct: 116 LLGTR-IPTHAAVSASVELARVVLGDGRAKFVNAVLRKVA 154 >gi|293572652|ref|ZP_06683620.1| ribosomal RNA small subunit methyltransferase B [Enterococcus faecium E980] gi|291607238|gb|EFF36592.1| ribosomal RNA small subunit methyltransferase B [Enterococcus faecium E980] Length = 452 Score = 75.5 bits (185), Expect = 2e-12, Method: Composition-based stats. Identities = 25/116 (21%), Positives = 47/116 (40%), Gaps = 3/116 (2%) Query: 53 TELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGV 112 E+ +S D+ F +I+G + ++ ++ ++ + + D + ++L V Sbjct: 35 NEMIKQSELNQKDVGLFTELIYGTISHQRLLEFYVAPLIAKAKKVD--DWV-KTLLYLSV 91 Query: 113 LELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRSGCVSAI 168 +L VP I++E V IA KF+N VL R+ G I Sbjct: 92 YQLEFLDKVPAHAILNEAVEIAKVKGNPGTGKFVNGVLRNYQRQGAPDLQGITDPI 147 >gi|257899950|ref|ZP_05679603.1| rRNA SAM-dependent methyltransferase [Enterococcus faecium Com15] gi|257837862|gb|EEV62936.1| rRNA SAM-dependent methyltransferase [Enterococcus faecium Com15] Length = 452 Score = 75.5 bits (185), Expect = 2e-12, Method: Composition-based stats. Identities = 25/116 (21%), Positives = 47/116 (40%), Gaps = 3/116 (2%) Query: 53 TELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGV 112 E+ +S D+ F +I+G + ++ ++ ++ + + D + ++L V Sbjct: 35 NEMIKQSELNQKDVGLFTELIYGTISHQRLLEFYVAPLIAKAKKVD--DWV-KTLLYLSV 91 Query: 113 LELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRSGCVSAI 168 +L VP I++E V IA KF+N VL R+ G I Sbjct: 92 YQLEFLDKVPAHAILNEAVEIAKVKGNPGTGKFVNGVLRNYQRQGAPDLQGIADPI 147 >gi|21282829|ref|NP_645917.1| hypothetical protein MW1100 [Staphylococcus aureus subsp. aureus MW2] gi|49486056|ref|YP_043277.1| hypothetical protein SAS1151 [Staphylococcus aureus subsp. aureus MSSA476] gi|297208139|ref|ZP_06924570.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus aureus subsp. aureus ATCC 51811] gi|300912219|ref|ZP_07129662.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus aureus subsp. aureus TCH70] gi|21204268|dbj|BAB94965.1| MW1100 [Staphylococcus aureus subsp. aureus MW2] gi|49244499|emb|CAG42928.1| hypothetical protein SAS1151 [Staphylococcus aureus subsp. aureus MSSA476] gi|296887382|gb|EFH26284.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus aureus subsp. aureus ATCC 51811] gi|300886465|gb|EFK81667.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus aureus subsp. aureus TCH70] Length = 435 Score = 75.5 bits (185), Expect = 2e-12, Method: Composition-based stats. Identities = 25/123 (20%), Positives = 50/123 (40%), Gaps = 6/123 (4%) Query: 35 CSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEK 94 + +I++E Y E+ E+ +D F I++G + RK +D + + K Sbjct: 11 DTIQDILNE-GAYSNLRINEVLSENELNAMDKALFTEIVYGTVKRKFTLDFYLKPFVKTK 69 Query: 95 WSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVS 154 + + +L + + + VP II+E V IA + +N +L + Sbjct: 70 -----IKAWVRQLLWMSIYQYVYLDKVPNHAIINEAVEIAKERGGYHNGNVVNGILRTMM 124 Query: 155 RKE 157 R + Sbjct: 125 RSD 127 >gi|283470429|emb|CAQ49640.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus aureus subsp. aureus ST398] Length = 435 Score = 75.5 bits (185), Expect = 2e-12, Method: Composition-based stats. Identities = 25/123 (20%), Positives = 50/123 (40%), Gaps = 6/123 (4%) Query: 35 CSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEK 94 + +I++E Y E+ E+ +D F I++G + RK +D + + K Sbjct: 11 DTIQDILNE-GAYSNLRINEVLSENELNAMDKALFTEIVYGTVKRKYTLDFYLKPFVKTK 69 Query: 95 WSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVS 154 + + +L + + + VP II+E V IA + +N +L + Sbjct: 70 -----IKAWVRQLLWMSIYQYVYLDKVPNHAIINEAVEIAKERGGYHNGNVVNGILRTMM 124 Query: 155 RKE 157 R + Sbjct: 125 RSD 127 >gi|258423740|ref|ZP_05686626.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus aureus A9635] gi|257845972|gb|EEV70000.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus aureus A9635] Length = 435 Score = 75.5 bits (185), Expect = 2e-12, Method: Composition-based stats. Identities = 25/123 (20%), Positives = 50/123 (40%), Gaps = 6/123 (4%) Query: 35 CSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEK 94 + +I++E Y E+ E+ +D F I++G + RK +D + + K Sbjct: 11 DTIQDILNE-GAYSNLRINEVLSENELNAMDKALFTEIVYGTVKRKYTLDFYLKPFVKTK 69 Query: 95 WSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVS 154 + + +L + + + VP II+E V IA + +N +L + Sbjct: 70 -----IKAWVRQLLWMSIYQYVYLDKVPNHAIINEAVEIAKERGGYHNGNVVNGILRTMM 124 Query: 155 RKE 157 R + Sbjct: 125 RSD 127 >gi|295407155|ref|ZP_06816956.1| LOW QUALITY PROTEIN: ribosomal RNA small subunit methyltransferase B [Staphylococcus aureus A8819] gi|294968008|gb|EFG44036.1| LOW QUALITY PROTEIN: ribosomal RNA small subunit methyltransferase B [Staphylococcus aureus A8819] Length = 428 Score = 75.5 bits (185), Expect = 2e-12, Method: Composition-based stats. Identities = 25/123 (20%), Positives = 50/123 (40%), Gaps = 6/123 (4%) Query: 35 CSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEK 94 + +I++E Y E+ E+ +D F I++G + RK +D + + K Sbjct: 11 DTIQDILNE-GAYSNLRINEVLSENELNAMDKALFTEIVYGTVKRKYTLDFYLKPFVKTK 69 Query: 95 WSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVS 154 + + +L + + + VP II+E V IA + +N +L + Sbjct: 70 -----IKAWVRQLLWMSIYQYVYLDKVPNHAIINEAVEIAKERGGYHNGNVVNGILRTMM 124 Query: 155 RKE 157 R + Sbjct: 125 RSD 127 >gi|116071798|ref|ZP_01469066.1| transcription antitermination protein NusB [Synechococcus sp. BL107] gi|116065421|gb|EAU71179.1| transcription antitermination protein NusB [Synechococcus sp. BL107] Length = 202 Score = 75.5 bits (185), Expect = 2e-12, Method: Composition-based stats. Identities = 22/78 (28%), Positives = 38/78 (48%), Gaps = 2/78 (2%) Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135 V+ +++ ID + + E W +RL I ILR V++L + P V +E V +A+ Sbjct: 118 VIRQRESIDARLDQVM-EGWRLARLPRIDRDILRLVVVDL-QTMGTPAPVAFNEAVELAN 175 Query: 136 DFFYGDEPKFINAVLDKV 153 + + IN VL + Sbjct: 176 RYSDEQGRRMINGVLRRF 193 >gi|160880621|ref|YP_001559589.1| sun protein [Clostridium phytofermentans ISDg] gi|160429287|gb|ABX42850.1| sun protein [Clostridium phytofermentans ISDg] Length = 453 Score = 75.5 bits (185), Expect = 2e-12, Method: Composition-based stats. Identities = 18/112 (16%), Positives = 43/112 (38%), Gaps = 2/112 (1%) Query: 59 SVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIEC 118 D + + GV+++K +D + K ++ ++ ++LR ++ Sbjct: 33 KDLSKQDRAFISRLCLGVLEQKLRLDYDLERF--SKIKVKKMKPVIRNVLRIAAYQIEFM 90 Query: 119 HSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRSGCVSAITQ 170 +P E V + G F+N +L +SR+ + +S + + Sbjct: 91 EQIPDSAACDEAVKLVKKRGLGGLSGFVNGILRNLSREFQKANGFDISKLNE 142 >gi|82750821|ref|YP_416562.1| RNA-binding protein [Staphylococcus aureus RF122] gi|82656352|emb|CAI80770.1| probable RNA-binding protein [Staphylococcus aureus RF122] Length = 435 Score = 75.5 bits (185), Expect = 2e-12, Method: Composition-based stats. Identities = 25/123 (20%), Positives = 50/123 (40%), Gaps = 6/123 (4%) Query: 35 CSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEK 94 + +I++E Y E+ E+ +D F I++G + RK +D + + K Sbjct: 11 DTIQDILNE-GAYSNLRINEVLSENELNAMDKALFTEIVYGTVKRKYTLDFYLKPFVKTK 69 Query: 95 WSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVS 154 + + +L + + + VP II+E V IA + +N +L + Sbjct: 70 -----IKAWVRQLLWMSIYQYVYLDKVPNHAIINEAVEIAKERGGYHNGNVVNGILRTMM 124 Query: 155 RKE 157 R + Sbjct: 125 RSD 127 >gi|68536089|ref|YP_250794.1| putative tRNA and rRNA cytosine-C5-methylase [Corynebacterium jeikeium K411] gi|68263688|emb|CAI37176.1| putative tRNA and rRNA cytosine-C5-methylase [Corynebacterium jeikeium K411] Length = 506 Score = 75.5 bits (185), Expect = 2e-12, Method: Composition-based stats. Identities = 19/100 (19%), Positives = 40/100 (40%), Gaps = 3/100 (3%) Query: 58 ESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIE 117 E+ D + + +G + + +D +I ++D + LR G +++ Sbjct: 73 EAGIKGRDAAFATELTYGTLRARGLLDAIIEDA--AGRKIEKIDSVALDALRLGAYQIL- 129 Query: 118 CHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKE 157 V ++ V + F G F+N VL ++RK+ Sbjct: 130 RTRVENHAAVNTSVELVKAFGAGQASGFVNGVLRALARKK 169 >gi|253731834|ref|ZP_04865999.1| rRNA (cytosine-5-)-methyltransferase [Staphylococcus aureus subsp. aureus USA300_TCH959] gi|253733545|ref|ZP_04867710.1| rRNA (cytosine-5-)-methyltransferase [Staphylococcus aureus subsp. aureus TCH130] gi|253724433|gb|EES93162.1| rRNA (cytosine-5-)-methyltransferase [Staphylococcus aureus subsp. aureus USA300_TCH959] gi|253728599|gb|EES97328.1| rRNA (cytosine-5-)-methyltransferase [Staphylococcus aureus subsp. aureus TCH130] Length = 435 Score = 75.5 bits (185), Expect = 2e-12, Method: Composition-based stats. Identities = 25/123 (20%), Positives = 50/123 (40%), Gaps = 6/123 (4%) Query: 35 CSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEK 94 + +I++E Y E+ E+ +D F I++G + RK +D + + K Sbjct: 11 DTIQDILNE-GAYSNLRINEVLSENELNAMDKALFTEIVYGTVKRKYTLDFYLKPFVKTK 69 Query: 95 WSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVS 154 + + +L + + + VP II+E V IA + +N +L + Sbjct: 70 -----IKAWVRQLLWMSIYQYVYLDKVPNHAIINEAVEIAKERGGYHNGNVVNGILRTMM 124 Query: 155 RKE 157 R + Sbjct: 125 RSD 127 >gi|257888654|ref|ZP_05668307.1| rRNA SAM-dependent methyltransferase [Enterococcus faecium 1,141,733] gi|257824708|gb|EEV51640.1| rRNA SAM-dependent methyltransferase [Enterococcus faecium 1,141,733] Length = 452 Score = 75.5 bits (185), Expect = 3e-12, Method: Composition-based stats. Identities = 25/116 (21%), Positives = 47/116 (40%), Gaps = 3/116 (2%) Query: 53 TELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGV 112 E+ +S D+ F +I+G + ++ ++ ++ + + D + ++L V Sbjct: 35 NEMIKQSELNQKDVGLFTELIYGTISHQRLLEFYVAPLIAKAKKVD--DWV-KTLLYLSV 91 Query: 113 LELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRSGCVSAI 168 +L VP I++E V IA KF+N VL R+ G I Sbjct: 92 YQLEFLDKVPAHAILNEAVEIAKVKGNPGTGKFVNGVLRNYQRQGAPDLQGIADPI 147 >gi|304381220|ref|ZP_07363873.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus aureus subsp. aureus ATCC BAA-39] gi|304340203|gb|EFM06144.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus aureus subsp. aureus ATCC BAA-39] Length = 435 Score = 75.5 bits (185), Expect = 3e-12, Method: Composition-based stats. Identities = 25/123 (20%), Positives = 50/123 (40%), Gaps = 6/123 (4%) Query: 35 CSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEK 94 + +I++E Y E+ E+ +D F I++G + RK +D + + K Sbjct: 11 DTIQDILNE-GAYSNLRINEVLSENELNAMDKALFTEIVYGTVKRKYTLDFYLKPFVKTK 69 Query: 95 WSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVS 154 + + +L + + + VP II+E V IA + +N +L + Sbjct: 70 -----IKAWVRQLLWMSIYQYVYLDKVPNHAIINEAVEIAKERGGYHNGNVVNGILRTMM 124 Query: 155 RKE 157 R + Sbjct: 125 RSD 127 >gi|302332821|gb|ADL23014.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus aureus subsp. aureus JKD6159] Length = 435 Score = 75.5 bits (185), Expect = 3e-12, Method: Composition-based stats. Identities = 25/123 (20%), Positives = 50/123 (40%), Gaps = 6/123 (4%) Query: 35 CSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEK 94 + +I++E Y E+ E+ +D F I++G + RK +D + + K Sbjct: 11 DTIQDILNE-GAYSNLRINEVLSENELNAMDKALFTEIVYGTVKRKYTLDFYLKPFVKTK 69 Query: 95 WSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVS 154 + + +L + + + VP II+E V IA + +N +L + Sbjct: 70 -----IKAWVRQLLWMSIYQYVYLDKVPNHAIINEAVEIAKERGGYHNGNVVNGILRTMM 124 Query: 155 RKE 157 R + Sbjct: 125 RSD 127 >gi|269940709|emb|CBI49090.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus aureus subsp. aureus TW20] Length = 435 Score = 75.5 bits (185), Expect = 3e-12, Method: Composition-based stats. Identities = 25/123 (20%), Positives = 50/123 (40%), Gaps = 6/123 (4%) Query: 35 CSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEK 94 + +I++E Y E+ E+ +D F I++G + RK +D + + K Sbjct: 11 DTIQDILNE-GAYSNLRINEVLSENELNAMDKALFTEIVYGTVKRKYTLDFYLKPFVKTK 69 Query: 95 WSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVS 154 + + +L + + + VP II+E V IA + +N +L + Sbjct: 70 -----IKAWVRQLLWMSIYQYVYLDKVPNHAIINEAVEIAKERGGYHNGNVVNGILRTMM 124 Query: 155 RKE 157 R + Sbjct: 125 RSD 127 >gi|167772291|ref|ZP_02444344.1| hypothetical protein ANACOL_03668 [Anaerotruncus colihominis DSM 17241] gi|167665394|gb|EDS09524.1| hypothetical protein ANACOL_03668 [Anaerotruncus colihominis DSM 17241] Length = 450 Score = 75.1 bits (184), Expect = 3e-12, Method: Composition-based stats. Identities = 28/144 (19%), Positives = 52/144 (36%), Gaps = 13/144 (9%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 + AR A QAL +++ G + I E + + + Sbjct: 26 KKDARYTAAQALLRMESAGAYSNLTIDSLIEKNGLDAREG-----------AFAAALFYT 74 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135 V++R+ ID ++++ + L + LR GV +L+ V +SE V + Sbjct: 75 VLERRLTIDHVLAAYCARG--LASLSKPVLQTLRLGVCQLVWMDGVDDYAAVSESVNLTR 132 Query: 136 DFFYGDEPKFINAVLDKVSRKEEI 159 F+N VL R ++ Sbjct: 133 ALGCAKASGFVNGVLRAFLRADKA 156 >gi|57651786|ref|YP_186092.1| sun protein [Staphylococcus aureus subsp. aureus COL] gi|148267708|ref|YP_001246651.1| sun protein [Staphylococcus aureus subsp. aureus JH9] gi|150393766|ref|YP_001316441.1| sun protein [Staphylococcus aureus subsp. aureus JH1] gi|151221339|ref|YP_001332161.1| hypothetical protein NWMN_1127 [Staphylococcus aureus subsp. aureus str. Newman] gi|161509389|ref|YP_001575048.1| rRNA (cytosine-5-)-methyltransferase [Staphylococcus aureus subsp. aureus USA300_TCH1516] gi|221142007|ref|ZP_03566500.1| rRNA (cytosine-5-)-methyltransferase [Staphylococcus aureus subsp. aureus str. JKD6009] gi|253315575|ref|ZP_04838788.1| rRNA (cytosine-5-)-methyltransferase [Staphylococcus aureus subsp. aureus str. CF-Marseille] gi|255006004|ref|ZP_05144605.2| rRNA (cytosine-5-)-methyltransferase [Staphylococcus aureus subsp. aureus Mu50-omega] gi|257795727|ref|ZP_05644706.1| ribosomal small subunit methyltransferase B [Staphylococcus aureus A9781] gi|258415951|ref|ZP_05682221.1| RNA-binding Sun protein [Staphylococcus aureus A9763] gi|258419698|ref|ZP_05682665.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus aureus A9719] gi|258438740|ref|ZP_05689893.1| ribosomal RNA small subunit methyltransferase [Staphylococcus aureus A9299] gi|258444554|ref|ZP_05692883.1| ribosomal RNA small subunit methyltransferase [Staphylococcus aureus A8115] gi|258447613|ref|ZP_05695757.1| RNA-binding Sun protein [Staphylococcus aureus A6300] gi|258449455|ref|ZP_05697558.1| RNA-binding Sun protein [Staphylococcus aureus A6224] gi|258452514|ref|ZP_05700520.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus aureus A5948] gi|258454834|ref|ZP_05702798.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus aureus A5937] gi|269202832|ref|YP_003282101.1| sun protein [Staphylococcus aureus subsp. aureus ED98] gi|282892703|ref|ZP_06300938.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus aureus A8117] gi|282919999|ref|ZP_06327728.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus aureus A9765] gi|282927557|ref|ZP_06335173.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus aureus A10102] gi|284024141|ref|ZP_06378539.1| sun protein [Staphylococcus aureus subsp. aureus 132] gi|294848210|ref|ZP_06788957.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus aureus A9754] gi|296275238|ref|ZP_06857745.1| sun protein [Staphylococcus aureus subsp. aureus MR1] gi|297245959|ref|ZP_06929818.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus aureus A8796] gi|57285972|gb|AAW38066.1| sun protein [Staphylococcus aureus subsp. aureus COL] gi|147740777|gb|ABQ49075.1| sun protein [Staphylococcus aureus subsp. aureus JH9] gi|149946218|gb|ABR52154.1| sun protein [Staphylococcus aureus subsp. aureus JH1] gi|150374139|dbj|BAF67399.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus str. Newman] gi|160368198|gb|ABX29169.1| rRNA (cytosine-5-)-methyltransferase [Staphylococcus aureus subsp. aureus USA300_TCH1516] gi|257789699|gb|EEV28039.1| ribosomal small subunit methyltransferase B [Staphylococcus aureus A9781] gi|257839287|gb|EEV63761.1| RNA-binding Sun protein [Staphylococcus aureus A9763] gi|257844283|gb|EEV68665.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus aureus A9719] gi|257847999|gb|EEV71992.1| ribosomal RNA small subunit methyltransferase [Staphylococcus aureus A9299] gi|257850047|gb|EEV74000.1| ribosomal RNA small subunit methyltransferase [Staphylococcus aureus A8115] gi|257853804|gb|EEV76763.1| RNA-binding Sun protein [Staphylococcus aureus A6300] gi|257857443|gb|EEV80341.1| RNA-binding Sun protein [Staphylococcus aureus A6224] gi|257859732|gb|EEV82574.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus aureus A5948] gi|257863217|gb|EEV85981.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus aureus A5937] gi|262075122|gb|ACY11095.1| sun protein [Staphylococcus aureus subsp. aureus ED98] gi|282590560|gb|EFB95637.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus aureus A10102] gi|282594715|gb|EFB99699.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus aureus A9765] gi|282764700|gb|EFC04825.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus aureus A8117] gi|294825010|gb|EFG41432.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus aureus A9754] gi|297177123|gb|EFH36377.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus aureus A8796] gi|302751040|gb|ADL65217.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus aureus subsp. aureus str. JKD6008] gi|312829611|emb|CBX34453.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus aureus subsp. aureus ECT-R 2] gi|315131008|gb|EFT86992.1| rRNA (cytosine-5-)-methyltransferase [Staphylococcus aureus subsp. aureus CGS03] gi|315198454|gb|EFU28783.1| rRNA (cytosine-5-)-methyltransferase [Staphylococcus aureus subsp. aureus CGS01] gi|320140968|gb|EFW32815.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus aureus subsp. aureus MRSA131] gi|320144317|gb|EFW36083.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus aureus subsp. aureus MRSA177] gi|329313886|gb|AEB88299.1| SA1060 protein [Staphylococcus aureus subsp. aureus T0131] gi|329727100|gb|EGG63556.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus aureus subsp. aureus 21172] Length = 435 Score = 75.1 bits (184), Expect = 3e-12, Method: Composition-based stats. Identities = 25/123 (20%), Positives = 50/123 (40%), Gaps = 6/123 (4%) Query: 35 CSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEK 94 + +I++E Y E+ E+ +D F I++G + RK +D + + K Sbjct: 11 DTIQDILNE-GAYSNLRINEVLSENELNAMDKALFTEIVYGTVKRKYTLDFYLKPFVKTK 69 Query: 95 WSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVS 154 + + +L + + + VP II+E V IA + +N +L + Sbjct: 70 -----IKAWVRQLLWMSIYQYVYLDKVPNHAIINEAVEIAKERGGYHNGNVVNGILRTMM 124 Query: 155 RKE 157 R + Sbjct: 125 RSD 127 >gi|291543913|emb|CBL17022.1| ribosomal RNA small subunit methyltransferase RsmB [Ruminococcus sp. 18P13] Length = 434 Score = 75.1 bits (184), Expect = 3e-12, Method: Composition-based stats. Identities = 22/88 (25%), Positives = 40/88 (45%), Gaps = 3/88 (3%) Query: 71 VIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEY 130 + +GV++R +D ++S + +LD + ++LR GV +L +P ++E Sbjct: 45 ALYYGVIERLPELDYVLSRYSKK--PPEKLDPTVRNLLRCGVYQLAHMR-IPDNAAVNEC 101 Query: 131 VCIAHDFFYGDEPKFINAVLDKVSRKEE 158 V Y F+NAVL R + Sbjct: 102 VNACKKLRYTSASGFVNAVLRGFVRDGK 129 >gi|87161915|ref|YP_493807.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|87127889|gb|ABD22403.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus aureus subsp. aureus USA300_FPR3757] Length = 435 Score = 75.1 bits (184), Expect = 3e-12, Method: Composition-based stats. Identities = 25/123 (20%), Positives = 50/123 (40%), Gaps = 6/123 (4%) Query: 35 CSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEK 94 + +I++E Y E+ E+ +D F I++G + RK +D + + K Sbjct: 11 DTIQDILNE-GAYSNLRINEVLSENELNAMDKALFTEIVYGTVKRKYTLDFYLKPFVKTK 69 Query: 95 WSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVS 154 + + +L + + + VP II+E V IA + +N +L + Sbjct: 70 -----IKAWVRQLLWMSIYQYVYLDKVPNHAIINEAVEIAKERGGYHNGNVVNGILRTMM 124 Query: 155 RKE 157 R + Sbjct: 125 RSD 127 >gi|260437316|ref|ZP_05791132.1| ribosomal RNA small subunit methyltransferase B [Butyrivibrio crossotus DSM 2876] gi|292810228|gb|EFF69433.1| ribosomal RNA small subunit methyltransferase B [Butyrivibrio crossotus DSM 2876] Length = 443 Score = 75.1 bits (184), Expect = 3e-12, Method: Composition-based stats. Identities = 28/125 (22%), Positives = 54/125 (43%), Gaps = 5/125 (4%) Query: 37 TTEIISEYETYRFCADTELDVESVY---LHVDLEWFRVIIHGVMDRKQHIDLLISSCLTE 93 +I E RF +V Y ++D + I G ++RK +D +I L Sbjct: 12 LDALIEINEKDRFTHIVLPEVLKKYQYLDNIDRSFISRTILGTVERKITLDYII--NLFS 69 Query: 94 KWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKV 153 K +++ ++ +ILR +LI V + +E V ++ + F+N VL + Sbjct: 70 KTPVNKMKPVIRNILRMSTYQLIYMEGVKDFAVCNEAVRLSVKKGFTALKGFVNGVLRTI 129 Query: 154 SRKEE 158 +R++ Sbjct: 130 AREKN 134 >gi|69245428|ref|ZP_00603423.1| Fmu, rRNA SAM-dependent methyltransferase [Enterococcus faecium DO] gi|257879839|ref|ZP_05659492.1| rRNA SAM-dependent methyltransferase [Enterococcus faecium 1,230,933] gi|257891680|ref|ZP_05671333.1| rRNA SAM-dependent methyltransferase [Enterococcus faecium 1,231,410] gi|257894155|ref|ZP_05673808.1| rRNA SAM-dependent methyltransferase [Enterococcus faecium 1,231,408] gi|258614266|ref|ZP_05712036.1| Sun protein [Enterococcus faecium DO] gi|260559512|ref|ZP_05831693.1| fmu [Enterococcus faecium C68] gi|293563686|ref|ZP_06678127.1| ribosomal RNA small subunit methyltransferase B [Enterococcus faecium E1162] gi|293570098|ref|ZP_06681178.1| ribosomal RNA small subunit methyltransferase B [Enterococcus faecium E1071] gi|314938230|ref|ZP_07845530.1| ribosomal RNA small subunit methyltransferase B [Enterococcus faecium TX0133a04] gi|314943127|ref|ZP_07849925.1| ribosomal RNA small subunit methyltransferase B [Enterococcus faecium TX0133C] gi|314949324|ref|ZP_07852666.1| ribosomal RNA small subunit methyltransferase B [Enterococcus faecium TX0082] gi|314952258|ref|ZP_07855272.1| ribosomal RNA small subunit methyltransferase B [Enterococcus faecium TX0133A] gi|314992114|ref|ZP_07857564.1| ribosomal RNA small subunit methyltransferase B [Enterococcus faecium TX0133B] gi|314996296|ref|ZP_07861352.1| ribosomal RNA small subunit methyltransferase B [Enterococcus faecium TX0133a01] gi|68195810|gb|EAN10246.1| Fmu, rRNA SAM-dependent methyltransferase [Enterococcus faecium DO] gi|257814067|gb|EEV42825.1| rRNA SAM-dependent methyltransferase [Enterococcus faecium 1,230,933] gi|257828040|gb|EEV54666.1| rRNA SAM-dependent methyltransferase [Enterococcus faecium 1,231,410] gi|257830534|gb|EEV57141.1| rRNA SAM-dependent methyltransferase [Enterococcus faecium 1,231,408] gi|260074611|gb|EEW62932.1| fmu [Enterococcus faecium C68] gi|291587470|gb|EFF19354.1| ribosomal RNA small subunit methyltransferase B [Enterococcus faecium E1071] gi|291604370|gb|EFF33863.1| ribosomal RNA small subunit methyltransferase B [Enterococcus faecium E1162] gi|313589540|gb|EFR68385.1| ribosomal RNA small subunit methyltransferase B [Enterococcus faecium TX0133a01] gi|313593328|gb|EFR72173.1| ribosomal RNA small subunit methyltransferase B [Enterococcus faecium TX0133B] gi|313595600|gb|EFR74445.1| ribosomal RNA small subunit methyltransferase B [Enterococcus faecium TX0133A] gi|313598135|gb|EFR76980.1| ribosomal RNA small subunit methyltransferase B [Enterococcus faecium TX0133C] gi|313642426|gb|EFS07006.1| ribosomal RNA small subunit methyltransferase B [Enterococcus faecium TX0133a04] gi|313644273|gb|EFS08853.1| ribosomal RNA small subunit methyltransferase B [Enterococcus faecium TX0082] Length = 452 Score = 75.1 bits (184), Expect = 3e-12, Method: Composition-based stats. Identities = 25/116 (21%), Positives = 47/116 (40%), Gaps = 3/116 (2%) Query: 53 TELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGV 112 E+ +S D+ F +I+G + ++ ++ ++ + + D + ++L V Sbjct: 35 NEMIKQSELNQKDVGLFTELIYGTISHQRLLEFYVAPLIAKAKKVD--DWV-KTLLYLSV 91 Query: 113 LELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRSGCVSAI 168 +L VP I++E V IA KF+N VL R+ G I Sbjct: 92 YQLEFLDKVPAHAILNEAVEIAKVKGNPGTGKFVNGVLRNYQRQGAPDLQGIADPI 147 >gi|269302790|gb|ACZ32890.1| transcription antitermination factor NusB [Chlamydophila pneumoniae LPCoLN] Length = 160 Score = 75.1 bits (184), Expect = 3e-12, Method: Composition-based stats. Identities = 26/143 (18%), Positives = 61/143 (42%), Gaps = 12/143 (8%) Query: 20 RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79 R +Q LY +D+ + ++ + + + V ++++ Sbjct: 26 REIILQMLYALDMAPSAEDSLVPLLMSQTAVSQKHVLVALNQTKS-----------ILEK 74 Query: 80 KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139 Q +DL+I + L + SF LD++ ++LR + E + ++I+E + + F Y Sbjct: 75 SQELDLIIGNAL-KNKSFDSLDLVEKNVLRLTLFEHFYSPPINKAILIAEAIRLVKKFSY 133 Query: 140 GDEPKFINAVLDKVSRKEEIKRS 162 + FI+A+L+ + + + Sbjct: 134 SEACPFIHAILNDIFTDSSLNEN 156 >gi|229031495|ref|ZP_04187495.1| Ribosomal RNA small subunit methyltransferase B [Bacillus cereus AH1271] gi|228729784|gb|EEL80764.1| Ribosomal RNA small subunit methyltransferase B [Bacillus cereus AH1271] Length = 402 Score = 75.1 bits (184), Expect = 3e-12, Method: Composition-based stats. Identities = 20/88 (22%), Positives = 38/88 (43%), Gaps = 5/88 (5%) Query: 69 FRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIIS 128 I++G + R+ +D + L +K ++ + +LR + ++I VP I Sbjct: 2 LTEIVYGTIQRRDTLDYYLQPFLKKK-----VEAWVRVLLRLSLYQMIYLDRVPERAAIH 56 Query: 129 EYVCIAHDFFYGDEPKFINAVLDKVSRK 156 E V IA + +N VL + R+ Sbjct: 57 EAVEIAKRRGHKGIAGMVNGVLRSIQRE 84 >gi|257438997|ref|ZP_05614752.1| ribosomal RNA small subunit methyltransferase B [Faecalibacterium prausnitzii A2-165] gi|257198582|gb|EEU96866.1| ribosomal RNA small subunit methyltransferase B [Faecalibacterium prausnitzii A2-165] Length = 440 Score = 75.1 bits (184), Expect = 3e-12, Method: Composition-based stats. Identities = 23/88 (26%), Positives = 40/88 (45%), Gaps = 3/88 (3%) Query: 65 DLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVE 124 D + I + V++ + +D ++ L + +RLD + ILRA + + VPV Sbjct: 39 DKAFAGAIFYTVLEHQGTLDFILEQFLPKG--LARLDPQVREILRAALAQARYMQ-VPVS 95 Query: 125 VIISEYVCIAHDFFYGDEPKFINAVLDK 152 ++E V + F +NAVL K Sbjct: 96 AAVNEAVKLTRTFKKASASGLVNAVLRK 123 >gi|312143910|ref|YP_003995356.1| sun protein [Halanaerobium sp. 'sapolanicus'] gi|311904561|gb|ADQ15002.1| sun protein [Halanaerobium sp. 'sapolanicus'] Length = 444 Score = 75.1 bits (184), Expect = 3e-12, Method: Composition-based stats. Identities = 24/102 (23%), Positives = 42/102 (41%), Gaps = 3/102 (2%) Query: 58 ESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIE 117 + + D F I +GV+ K ++D +I S ++D + LR G+ +L+ Sbjct: 30 QEITDQRDKNLFTEIFYGVIRNKLYLDHIIKHF--SNKSLEKMDKEVLLGLRIGIYQLLF 87 Query: 118 CHSVPVEVIISEYVCIAHDFFYGDE-PKFINAVLDKVSRKEE 158 +P I E V F+N +L V+RK + Sbjct: 88 LDKIPARAAIYESVEAVKLMLKNKGAAAFVNGILRNVNRKID 129 >gi|294618612|ref|ZP_06698151.1| ribosomal RNA small subunit methyltransferase B [Enterococcus faecium E1679] gi|291595131|gb|EFF26469.1| ribosomal RNA small subunit methyltransferase B [Enterococcus faecium E1679] Length = 445 Score = 75.1 bits (184), Expect = 3e-12, Method: Composition-based stats. Identities = 25/116 (21%), Positives = 47/116 (40%), Gaps = 3/116 (2%) Query: 53 TELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGV 112 E+ +S D+ F +I+G + ++ ++ ++ + + D + ++L V Sbjct: 28 NEMIKQSELNQKDVGLFTELIYGTISHQRLLEFYVAPLIAKAKKVD--DWV-KTLLYLSV 84 Query: 113 LELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRSGCVSAI 168 +L VP I++E V IA KF+N VL R+ G I Sbjct: 85 YQLEFLDKVPAHAILNEAVEIAKVKGNPGTGKFVNGVLRNYQRQGAPDLQGIADPI 140 >gi|261206663|ref|ZP_05921361.1| fmu [Enterococcus faecium TC 6] gi|289565024|ref|ZP_06445478.1| ribosomal RNA small subunit methyltransferase B [Enterococcus faecium D344SRF] gi|294614916|ref|ZP_06694807.1| ribosomal RNA small subunit methyltransferase B [Enterococcus faecium E1636] gi|260079156|gb|EEW66849.1| fmu [Enterococcus faecium TC 6] gi|289163231|gb|EFD11077.1| ribosomal RNA small subunit methyltransferase B [Enterococcus faecium D344SRF] gi|291592202|gb|EFF23820.1| ribosomal RNA small subunit methyltransferase B [Enterococcus faecium E1636] Length = 452 Score = 75.1 bits (184), Expect = 3e-12, Method: Composition-based stats. Identities = 25/116 (21%), Positives = 47/116 (40%), Gaps = 3/116 (2%) Query: 53 TELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGV 112 E+ +S D+ F +I+G + ++ ++ ++ + + D + ++L V Sbjct: 35 NEMIKQSELNQKDVGLFTELIYGTISHQRLLEFYVAPLIAKAKKVD--DWV-KTLLYLSV 91 Query: 113 LELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRSGCVSAI 168 +L VP I++E V IA KF+N VL R+ G I Sbjct: 92 YQLEFLDKVPAHAILNEAVEIAKVKGNPGTGKFVNGVLRNYQRQGAPDLQGIADPI 147 >gi|88194923|ref|YP_499723.1| sun protein [Staphylococcus aureus subsp. aureus NCTC 8325] gi|87202481|gb|ABD30291.1| sun protein [Staphylococcus aureus subsp. aureus NCTC 8325] gi|329724759|gb|EGG61264.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus aureus subsp. aureus 21189] Length = 435 Score = 75.1 bits (184), Expect = 3e-12, Method: Composition-based stats. Identities = 25/123 (20%), Positives = 50/123 (40%), Gaps = 6/123 (4%) Query: 35 CSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEK 94 + +I++E Y E+ E+ +D F I++G + RK +D + + K Sbjct: 11 DTIQDILNE-GAYSNLRINEVLSENELNAMDKALFTEIVYGTVKRKYTLDFYLKPFVKTK 69 Query: 95 WSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVS 154 + + +L + + + VP II+E V IA + +N +L + Sbjct: 70 -----IKAWVRQLLWMSIYQYVYLDKVPNHAIINEAVEIAKERGGYHNGNVVNGILRTMM 124 Query: 155 RKE 157 R + Sbjct: 125 RSD 127 >gi|116622296|ref|YP_824452.1| NusB/RsmB/TIM44 [Candidatus Solibacter usitatus Ellin6076] gi|116225458|gb|ABJ84167.1| NusB/RsmB/TIM44 [Candidatus Solibacter usitatus Ellin6076] Length = 360 Score = 75.1 bits (184), Expect = 3e-12, Method: Composition-based stats. Identities = 29/139 (20%), Positives = 50/139 (35%), Gaps = 17/139 (12%) Query: 18 IARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVM 77 AR+AA +I+ E+ + +D L + D I+ GV+ Sbjct: 5 AARIAAF--------------DILQLVESGGYASDLLLARTADLDSRDAGLASEIVFGVL 50 Query: 78 DRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDF 137 + +D LI LD + + LR + ++ VP + E V + Sbjct: 51 RYRAQLDFLIIHYAGRSRK---LDPEVRTALRMAIYQIRYLERVPPHAAVKESVELVKRA 107 Query: 138 FYGDEPKFINAVLDKVSRK 156 F+NA+L +V R Sbjct: 108 RKTSAAGFVNAILRQVDRD 126 >gi|293553676|ref|ZP_06674300.1| ribosomal RNA small subunit methyltransferase B [Enterococcus faecium E1039] gi|291602251|gb|EFF32479.1| ribosomal RNA small subunit methyltransferase B [Enterococcus faecium E1039] Length = 452 Score = 75.1 bits (184), Expect = 3e-12, Method: Composition-based stats. Identities = 25/116 (21%), Positives = 47/116 (40%), Gaps = 3/116 (2%) Query: 53 TELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGV 112 E+ +S D+ F +I+G + ++ ++ ++ + + D + ++L V Sbjct: 35 NEMIKQSELNQKDVGLFTELIYGTISHQRLLEFYVAPLIAKAKKVD--DWV-KTLLYLSV 91 Query: 113 LELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRSGCVSAI 168 +L VP I++E V IA KF+N VL R+ G I Sbjct: 92 YQLEFLDKVPAHAILNEAVEIAKVKGNPGTGKFVNGVLRNYQRQGAPDLQGIADPI 147 >gi|312876959|ref|ZP_07736934.1| sun protein [Caldicellulosiruptor lactoaceticus 6A] gi|311796274|gb|EFR12628.1| sun protein [Caldicellulosiruptor lactoaceticus 6A] Length = 406 Score = 75.1 bits (184), Expect = 3e-12, Method: Composition-based stats. Identities = 29/110 (26%), Positives = 46/110 (41%), Gaps = 6/110 (5%) Query: 54 ELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVL 113 E + + D F ++HGV+ K ID I+ + R+ +ILR Sbjct: 2 EKFHQKLKNEKDRALFVELVHGVLRYKNLIDYYINFVAKKGVKDRRI----LNILRVATY 57 Query: 114 ELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSR-KEEIKRS 162 EL+ +P +SE IA F+NA+L + R K +I+ S Sbjct: 58 ELLFLEKIPEYATVSEACEIASKIS-PHLKAFVNAILRNIIRNKNQIEES 106 >gi|229013049|ref|ZP_04170214.1| Ribosomal RNA small subunit methyltransferase B [Bacillus mycoides DSM 2048] gi|228748303|gb|EEL98163.1| Ribosomal RNA small subunit methyltransferase B [Bacillus mycoides DSM 2048] Length = 415 Score = 75.1 bits (184), Expect = 3e-12, Method: Composition-based stats. Identities = 19/100 (19%), Positives = 42/100 (42%), Gaps = 5/100 (5%) Query: 57 VESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELI 116 ++ D+ +++G + R+ +D + L +K ++ + +LR + +++ Sbjct: 3 EKNTIDRKDIGLLTEMVYGTIQRRDTLDYYLQPFLRKK-----VEAWVRVLLRLSLYQML 57 Query: 117 ECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRK 156 VP I E V IA + +N VL + R+ Sbjct: 58 YLDRVPERAAIHEAVEIAKRRGHKGISGMVNGVLRSIQRE 97 >gi|229061468|ref|ZP_04198813.1| Ribosomal RNA small subunit methyltransferase B [Bacillus cereus AH603] gi|229134673|ref|ZP_04263482.1| Ribosomal RNA small subunit methyltransferase B [Bacillus cereus BDRD-ST196] gi|229168605|ref|ZP_04296328.1| Ribosomal RNA small subunit methyltransferase B [Bacillus cereus AH621] gi|228615011|gb|EEK72113.1| Ribosomal RNA small subunit methyltransferase B [Bacillus cereus AH621] gi|228648719|gb|EEL04745.1| Ribosomal RNA small subunit methyltransferase B [Bacillus cereus BDRD-ST196] gi|228717891|gb|EEL69539.1| Ribosomal RNA small subunit methyltransferase B [Bacillus cereus AH603] Length = 415 Score = 75.1 bits (184), Expect = 3e-12, Method: Composition-based stats. Identities = 19/100 (19%), Positives = 42/100 (42%), Gaps = 5/100 (5%) Query: 57 VESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELI 116 ++ D+ +++G + R+ +D + L +K ++ + +LR + +++ Sbjct: 3 EKNTIDRKDIGLLTEMVYGTIQRRDTLDYYLQPFLRKK-----VEAWVRVLLRLSLYQML 57 Query: 117 ECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRK 156 VP I E V IA + +N VL + R+ Sbjct: 58 YLDRVPERAAIHEAVEIAKRRGHKGISGMVNGVLRSIQRE 97 >gi|225018695|ref|ZP_03707887.1| hypothetical protein CLOSTMETH_02645 [Clostridium methylpentosum DSM 5476] gi|224948423|gb|EEG29632.1| hypothetical protein CLOSTMETH_02645 [Clostridium methylpentosum DSM 5476] Length = 441 Score = 75.1 bits (184), Expect = 3e-12, Method: Composition-based stats. Identities = 30/142 (21%), Positives = 57/142 (40%), Gaps = 14/142 (9%) Query: 17 GIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGV 76 AR A+ AL ++D G Y A + S D ++ + +GV Sbjct: 4 RTARDLALSALLKMDKQG-----------AYSNLAFDGMLSSSSLSPRDRDFAAKLFYGV 52 Query: 77 MDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHD 136 ++ K +D +I+S T K ++ + +ILR G+ ++ + ++E V + Sbjct: 53 LETKITLDYIIASYATMK--PEKISSDVRNILRLGLYQIKY-LDLEDFAAVNESVNLVKL 109 Query: 137 FFYGDEPKFINAVLDKVSRKEE 158 F+NA+L R + Sbjct: 110 RGKKSASGFVNAILRAFLRDGK 131 >gi|194688732|gb|ACF78450.1| unknown [Zea mays] Length = 284 Score = 74.8 bits (183), Expect = 4e-12, Method: Composition-based stats. Identities = 30/138 (21%), Positives = 53/138 (38%), Gaps = 19/138 (13%) Query: 34 GCSTTEIISEYETYRFCADTELDVES-----------VYLHVDLEWFRVIIHGVM----D 78 G E+ +E E + + E D + VY + L R ++ V Sbjct: 136 GGGPLEVGTEEEAEKLTSQNEKDSANEADVLSAPPKLVYNNFVLRLSRELLVAVASGWDK 195 Query: 79 RKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFF 138 + ID +I ++ +R+ + IL + E+ P +V+I+E V +A F Sbjct: 196 HVEIIDKIIPQAWKDE-PVARI--LELCILHIAMAEMT-SKGTPHKVVINEAVDLAKRFC 251 Query: 139 YGDEPKFINAVLDKVSRK 156 G P+ IN L + Sbjct: 252 DGGAPRVINGCLRTFVKD 269 >gi|295696042|ref|YP_003589280.1| sun protein [Bacillus tusciae DSM 2912] gi|295411644|gb|ADG06136.1| sun protein [Bacillus tusciae DSM 2912] Length = 486 Score = 74.8 bits (183), Expect = 4e-12, Method: Composition-based stats. Identities = 27/171 (15%), Positives = 59/171 (34%), Gaps = 23/171 (13%) Query: 1 MTIQDNKKDLKLSHRRGI---------ARLAAVQALYQIDIIGCSTTEIISEYETYRFCA 51 M+ + RR + AR A + L ++ E Y A Sbjct: 1 MSPDARAANPVRDPRRRVSGRAGAVSPARRGAFEVL-----------LLVEERRAYSHIA 49 Query: 52 DTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAG 111 ++ D I+ G + ++ +D I++ + +RLD ++ LR Sbjct: 50 LRQVLNRLGADRRDSALATEIVQGTLRWQRWLDEQINA--KSRIPIARLDAVVRVTLRMA 107 Query: 112 VLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRS 162 V +L + ++++ V + ++N VL + R+++ Sbjct: 108 VYQLYKLRHCAPHAVVNDAVELVKG-TQPRAASYVNGVLRALEREQQTPSP 157 >gi|160945218|ref|ZP_02092444.1| hypothetical protein FAEPRAM212_02737 [Faecalibacterium prausnitzii M21/2] gi|158442949|gb|EDP19954.1| hypothetical protein FAEPRAM212_02737 [Faecalibacterium prausnitzii M21/2] Length = 443 Score = 74.8 bits (183), Expect = 4e-12, Method: Composition-based stats. Identities = 30/133 (22%), Positives = 54/133 (40%), Gaps = 15/133 (11%) Query: 20 RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79 R AV AL + + G S + +E + + D + I + V++ Sbjct: 6 RAVAVAALVRQEQNGFSNLVLDAELKRQKLEG------------RDKAFASAIFYTVLEH 53 Query: 80 KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139 + +D ++ L + ++LD + ILRA + + VPV ++E V + F Sbjct: 54 RGTLDYILEQFLPKG--LAKLDAPVREILRAALAQARYMQ-VPVSAAVNEAVKLTRTFKK 110 Query: 140 GDEPKFINAVLDK 152 +NAVL K Sbjct: 111 SSASGLVNAVLRK 123 >gi|89898049|ref|YP_515159.1| transcription antitermination protein NusB [Chlamydophila felis Fe/C-56] gi|89331421|dbj|BAE81014.1| N utilization protein B [Chlamydophila felis Fe/C-56] Length = 154 Score = 74.8 bits (183), Expect = 4e-12, Method: Composition-based stats. Identities = 29/140 (20%), Positives = 59/140 (42%), Gaps = 12/140 (8%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 + R +Q LY +D+ S ++ E V + L + + I+ Sbjct: 22 KQKMREIVLQMLYALDMDPMSEESLVPLLMA-------ETAVTQKHAFSALNFSKEIL-- 72 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135 + +DLLI+ + SF +L ++ ++LR + E + ++I+E + Sbjct: 73 --AKSPELDLLIAQT-VKNTSFEKLTLMEKNVLRLALFEHFHGQHINAAILIAEATRLVK 129 Query: 136 DFFYGDEPKFINAVLDKVSR 155 F Y + F++AVL+ + R Sbjct: 130 KFSYTEACSFVHAVLNDIFR 149 >gi|330443798|ref|YP_004376784.1| hypothetical protein G5S_0047 [Chlamydophila pecorum E58] gi|328806908|gb|AEB41081.1| conserved hypothetical protein [Chlamydophila pecorum E58] Length = 154 Score = 74.8 bits (183), Expect = 4e-12, Method: Composition-based stats. Identities = 34/140 (24%), Positives = 63/140 (45%), Gaps = 12/140 (8%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 R R +Q LY + G + E A+T + + V+L L + + Sbjct: 8 RQKMREIVLQMLYAL---GVDPS--AEEGLVPLLMAETAVAQKHVFLA--LRYSKQ---- 56 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135 V+++ +D LIS + SF L+++ +ILR + E + +P ++I+E + Sbjct: 57 VLEKSSELDALISQTVKTT-SFENLNLMEKNILRLTLFEYLYGGPIPSSILIAEASRLIK 115 Query: 136 DFFYGDEPKFINAVLDKVSR 155 F Y + F+ AVL+ + R Sbjct: 116 KFSYLEARAFVQAVLNDIFR 135 >gi|323440992|gb|EGA98699.1| RNA-binding protein [Staphylococcus aureus O11] Length = 435 Score = 74.8 bits (183), Expect = 4e-12, Method: Composition-based stats. Identities = 25/123 (20%), Positives = 50/123 (40%), Gaps = 6/123 (4%) Query: 35 CSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEK 94 + +I++E Y E+ E+ +D F I++G + RK +D + + K Sbjct: 11 DTIQDILNE-GAYSNLRINEVLSENELNVMDKALFTEIVYGTVKRKYTLDFYLKPFVKTK 69 Query: 95 WSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVS 154 + + +L + + + VP II+E V IA + +N +L + Sbjct: 70 -----IKAWVRQLLWMSIYQYVYLDKVPNHAIINEAVEIAKERGGYHNGNVVNGILRTMM 124 Query: 155 RKE 157 R + Sbjct: 125 RSD 127 >gi|298694510|gb|ADI97732.1| probable RNA-binding protein [Staphylococcus aureus subsp. aureus ED133] Length = 435 Score = 74.8 bits (183), Expect = 4e-12, Method: Composition-based stats. Identities = 25/123 (20%), Positives = 50/123 (40%), Gaps = 6/123 (4%) Query: 35 CSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEK 94 + +I++E Y E+ E+ +D F I++G + RK +D + + K Sbjct: 11 DTIQDILNE-GAYSNLRINEVLSENELNVMDKALFTEIVYGTVKRKYTLDFYLKPFVKTK 69 Query: 95 WSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVS 154 + + +L + + + VP II+E V IA + +N +L + Sbjct: 70 -----IKAWVRQLLWMSIYQYVYLDKVPNHAIINEAVEIAKERGGYHNGNVVNGILRTMM 124 Query: 155 RKE 157 R + Sbjct: 125 RSD 127 >gi|257425270|ref|ZP_05601695.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus aureus subsp. aureus 55/2053] gi|257427930|ref|ZP_05604328.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus aureus subsp. aureus 65-1322] gi|257430563|ref|ZP_05606945.1| RNA-binding Sun protein [Staphylococcus aureus subsp. aureus 68-397] gi|257433324|ref|ZP_05609682.1| RNA-binding Sun protein [Staphylococcus aureus subsp. aureus E1410] gi|257436166|ref|ZP_05612213.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus aureus subsp. aureus M876] gi|282903770|ref|ZP_06311658.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus aureus subsp. aureus C160] gi|282905534|ref|ZP_06313389.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus aureus subsp. aureus Btn1260] gi|282908510|ref|ZP_06316340.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus aureus subsp. aureus WW2703/97] gi|282913992|ref|ZP_06321779.1| sun protein [Staphylococcus aureus subsp. aureus M899] gi|282918914|ref|ZP_06326649.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus aureus subsp. aureus C427] gi|282924037|ref|ZP_06331713.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus aureus subsp. aureus C101] gi|283957958|ref|ZP_06375409.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus aureus subsp. aureus A017934/97] gi|293501025|ref|ZP_06666876.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus aureus subsp. aureus 58-424] gi|293509984|ref|ZP_06668692.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus aureus subsp. aureus M809] gi|293526572|ref|ZP_06671257.1| sun protein [Staphylococcus aureus subsp. aureus M1015] gi|297591339|ref|ZP_06949977.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus aureus subsp. aureus MN8] gi|257271727|gb|EEV03865.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus aureus subsp. aureus 55/2053] gi|257274771|gb|EEV06258.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus aureus subsp. aureus 65-1322] gi|257278691|gb|EEV09310.1| RNA-binding Sun protein [Staphylococcus aureus subsp. aureus 68-397] gi|257281417|gb|EEV11554.1| RNA-binding Sun protein [Staphylococcus aureus subsp. aureus E1410] gi|257284448|gb|EEV14568.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus aureus subsp. aureus M876] gi|282314009|gb|EFB44401.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus aureus subsp. aureus C101] gi|282316724|gb|EFB47098.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus aureus subsp. aureus C427] gi|282322060|gb|EFB52384.1| sun protein [Staphylococcus aureus subsp. aureus M899] gi|282327572|gb|EFB57855.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus aureus subsp. aureus WW2703/97] gi|282330826|gb|EFB60340.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus aureus subsp. aureus Btn1260] gi|282595388|gb|EFC00352.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus aureus subsp. aureus C160] gi|283790107|gb|EFC28924.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus aureus subsp. aureus A017934/97] gi|290920644|gb|EFD97707.1| sun protein [Staphylococcus aureus subsp. aureus M1015] gi|291096030|gb|EFE26291.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus aureus subsp. aureus 58-424] gi|291466928|gb|EFF09446.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus aureus subsp. aureus M809] gi|297576225|gb|EFH94941.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus aureus subsp. aureus MN8] gi|315194103|gb|EFU24496.1| hypothetical protein CGSSa00_05338 [Staphylococcus aureus subsp. aureus CGS00] Length = 435 Score = 74.8 bits (183), Expect = 4e-12, Method: Composition-based stats. Identities = 25/123 (20%), Positives = 50/123 (40%), Gaps = 6/123 (4%) Query: 35 CSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEK 94 + +I++E Y E+ E+ +D F I++G + RK +D + + K Sbjct: 11 DTIQDILNE-GAYSNLRINEVLSENELNVMDKALFTEIVYGTVKRKYTLDFYLKPFVKTK 69 Query: 95 WSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVS 154 + + +L + + + VP II+E V IA + +N +L + Sbjct: 70 -----IKAWVRQLLWMSIYQYVYLDKVPNHAIINEAVEIAKERGGYHNGNVVNGILRTMM 124 Query: 155 RKE 157 R + Sbjct: 125 RSD 127 >gi|256545255|ref|ZP_05472620.1| N utilization substance protein B [Anaerococcus vaginalis ATCC 51170] gi|256399082|gb|EEU12694.1| N utilization substance protein B [Anaerococcus vaginalis ATCC 51170] Length = 58 Score = 74.8 bits (183), Expect = 4e-12, Method: Composition-based stats. Identities = 22/59 (37%), Positives = 34/59 (57%), Gaps = 1/59 (1%) Query: 100 LDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEE 158 + + SIL V E+ E +P+ V I+E V IA ++ D KFIN+VL K++ K + Sbjct: 1 MAKVDRSILFLSVNEM-ENLDIPISVSINEAVNIAKEYSTSDGYKFINSVLGKIAEKRK 58 >gi|49483380|ref|YP_040604.1| hypothetical protein SAR1193 [Staphylococcus aureus subsp. aureus MRSA252] gi|295427702|ref|ZP_06820334.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus aureus subsp. aureus EMRSA16] gi|49241509|emb|CAG40195.1| hypothetical protein SAR1193 [Staphylococcus aureus subsp. aureus MRSA252] gi|295128060|gb|EFG57694.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus aureus subsp. aureus EMRSA16] Length = 435 Score = 74.8 bits (183), Expect = 4e-12, Method: Composition-based stats. Identities = 25/123 (20%), Positives = 50/123 (40%), Gaps = 6/123 (4%) Query: 35 CSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEK 94 + +I++E Y E+ E+ +D F I++G + RK +D + + K Sbjct: 11 DTIQDILNE-GAYSNLRINEVLSENELNVMDKALFTEIVYGTVKRKYTLDFYLKPFVKTK 69 Query: 95 WSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVS 154 + + +L + + + VP II+E V IA + +N +L + Sbjct: 70 -----IKAWVRQLLWMSIYQYVYLDKVPNHAIINEAVEIAKERGGYHNGNVVNGILRTMM 124 Query: 155 RKE 157 R + Sbjct: 125 RSD 127 >gi|323442308|gb|EGA99938.1| RNA-binding protein [Staphylococcus aureus O46] Length = 435 Score = 74.8 bits (183), Expect = 4e-12, Method: Composition-based stats. Identities = 25/123 (20%), Positives = 50/123 (40%), Gaps = 6/123 (4%) Query: 35 CSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEK 94 + +I++E Y E+ E+ +D F I++G + RK +D + + K Sbjct: 11 DTIQDILNE-GAYSNLRINEVLSENELNVMDKALFTEIVYGTVKRKYTLDFYLKPFVKTK 69 Query: 95 WSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVS 154 + + +L + + + VP II+E V IA + +N +L + Sbjct: 70 -----IKAWVRQLLWMSIYQYVYLDKVPNHAIINEAVEIAKERGGYHNGNVVNGILRTMM 124 Query: 155 RKE 157 R + Sbjct: 125 RSD 127 >gi|229174531|ref|ZP_04302063.1| Ribosomal RNA small subunit methyltransferase B [Bacillus cereus MM3] gi|228609091|gb|EEK66381.1| Ribosomal RNA small subunit methyltransferase B [Bacillus cereus MM3] Length = 402 Score = 74.8 bits (183), Expect = 4e-12, Method: Composition-based stats. Identities = 20/88 (22%), Positives = 38/88 (43%), Gaps = 5/88 (5%) Query: 69 FRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIIS 128 I++G + R+ +D + L +K ++ + +LR + ++I VP I Sbjct: 2 LTEIVYGTIQRRDTLDYYLQPFLKKK-----VEAWVRVLLRLSLYQMIYLDRVPERAAIH 56 Query: 129 EYVCIAHDFFYGDEPKFINAVLDKVSRK 156 E V IA + +N VL + R+ Sbjct: 57 EAVEIAKRRGHKGIAGMVNGVLRSIQRE 84 >gi|218290478|ref|ZP_03494598.1| sun protein [Alicyclobacillus acidocaldarius LAA1] gi|218239499|gb|EED06694.1| sun protein [Alicyclobacillus acidocaldarius LAA1] Length = 451 Score = 74.8 bits (183), Expect = 4e-12, Method: Composition-based stats. Identities = 29/139 (20%), Positives = 54/139 (38%), Gaps = 14/139 (10%) Query: 20 RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79 R A QAL +++ G + E + D I +G + R Sbjct: 6 RRRAYQALIRVERDGAYLNVALQEALA-----------GAGVDERDRALATEIAYGTLRR 54 Query: 80 KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139 + +D L+S + S+LD + ILR G ++ + VP + ++ V +A Sbjct: 55 QITLDRLLSPLVRR--PMSKLDPEVRVILRMGAYQMTWLNRVPAYAVANDAVELAKRH-R 111 Query: 140 GDEPKFINAVLDKVSRKEE 158 +NAVL + + + + Sbjct: 112 PQAAALVNAVLRRYAERAQ 130 >gi|312127904|ref|YP_003992778.1| sun protein [Caldicellulosiruptor hydrothermalis 108] gi|311777923|gb|ADQ07409.1| sun protein [Caldicellulosiruptor hydrothermalis 108] Length = 410 Score = 74.8 bits (183), Expect = 4e-12, Method: Composition-based stats. Identities = 27/110 (24%), Positives = 46/110 (41%), Gaps = 6/110 (5%) Query: 54 ELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVL 113 E + + D F ++HGV+ K I+ I+ + R+ +ILR Sbjct: 6 EKFHQKLKNEKDRALFVELVHGVLRYKSLIEYYINFVAKKGVKDKRI----LNILRVATY 61 Query: 114 ELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSR-KEEIKRS 162 EL+ +P ++E IA F+NA+L + R K +I+ S Sbjct: 62 ELLFLEKIPEYATVNEACEIASKIS-PHLKAFVNAILRNIIRNKNQIEES 110 >gi|317968466|ref|ZP_07969856.1| transcription antitermination protein NusB [Synechococcus sp. CB0205] Length = 208 Score = 74.4 bits (182), Expect = 5e-12, Method: Composition-based stats. Identities = 19/80 (23%), Positives = 37/80 (46%), Gaps = 2/80 (2%) Query: 74 HGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCI 133 V+ + +D + + + E W +RL I ILR +++ + + P V +E V + Sbjct: 124 RAVLSGRADLDQRLDAVM-EGWRLTRLPRIDRDILRLAAVDIEQF-NTPAPVACNEAVEL 181 Query: 134 AHDFFYGDEPKFINAVLDKV 153 A+ + + IN VL + Sbjct: 182 ANRYSDEQGRRMINGVLRRF 201 >gi|227552686|ref|ZP_03982735.1| RNA methyltransferase [Enterococcus faecium TX1330] gi|257897390|ref|ZP_05677043.1| rRNA SAM-dependent methyltransferase [Enterococcus faecium Com12] gi|293378850|ref|ZP_06625005.1| ribosomal RNA small subunit methyltransferase B [Enterococcus faecium PC4.1] gi|227178181|gb|EEI59153.1| RNA methyltransferase [Enterococcus faecium TX1330] gi|257833955|gb|EEV60376.1| rRNA SAM-dependent methyltransferase [Enterococcus faecium Com12] gi|292642391|gb|EFF60546.1| ribosomal RNA small subunit methyltransferase B [Enterococcus faecium PC4.1] Length = 452 Score = 74.4 bits (182), Expect = 5e-12, Method: Composition-based stats. Identities = 26/116 (22%), Positives = 48/116 (41%), Gaps = 3/116 (2%) Query: 53 TELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGV 112 E+ +S D+ F +I+G + ++ ++ ++S + + D + ++L V Sbjct: 35 NEMIKQSELNQKDVGLFTELIYGTISHQRLLEFYVASLIAKAKKVD--DWV-KTLLYLSV 91 Query: 113 LELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRSGCVSAI 168 +L VP I++E V IA KF+N VL R+ G I Sbjct: 92 YQLEFLDKVPAHAILNEAVEIAKVKGNPGTGKFVNGVLRNYQRQGAPDLQGIADPI 147 >gi|229826167|ref|ZP_04452236.1| hypothetical protein GCWU000182_01539 [Abiotrophia defectiva ATCC 49176] gi|229789037|gb|EEP25151.1| hypothetical protein GCWU000182_01539 [Abiotrophia defectiva ATCC 49176] Length = 455 Score = 74.4 bits (182), Expect = 5e-12, Method: Composition-based stats. Identities = 22/104 (21%), Positives = 42/104 (40%), Gaps = 2/104 (1%) Query: 55 LDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLE 114 LD + + G +++ ++D +I+S K +L I+ ++ V + Sbjct: 30 LDNYLYLDKASRGFITRLYEGSIEKMIYLDFVINSF--SKTPVKKLKPIIKILMETAVYQ 87 Query: 115 LIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEE 158 + VP I+E V +A F+N VL ++R E Sbjct: 88 IFFMDRVPDSAAINEAVKLAKKRGLAGLSGFVNGVLRNIARNRE 131 >gi|282910789|ref|ZP_06318592.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus aureus subsp. aureus WBG10049] gi|282325394|gb|EFB55703.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus aureus subsp. aureus WBG10049] gi|312438406|gb|ADQ77477.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus aureus subsp. aureus TCH60] Length = 435 Score = 74.4 bits (182), Expect = 5e-12, Method: Composition-based stats. Identities = 25/123 (20%), Positives = 50/123 (40%), Gaps = 6/123 (4%) Query: 35 CSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEK 94 + +I++E Y E+ E+ +D F I++G + RK +D + + K Sbjct: 11 DTIQDILNE-GAYSNLRINEVLSENELNVMDKALFTEIVYGTVKRKYTLDFYLRPFVKTK 69 Query: 95 WSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVS 154 + + +L + + + VP II+E V IA + +N +L + Sbjct: 70 -----IKAWVRQLLWMSIYQYVYLDKVPNHAIINEAVEIAKERGGYHNGNVVNGILRTMM 124 Query: 155 RKE 157 R + Sbjct: 125 RSD 127 >gi|329943115|ref|ZP_08291889.1| transcription antitermination factor NusB [Chlamydophila psittaci Cal10] gi|332287697|ref|YP_004422598.1| transcription antitermination factor NusB [Chlamydophila psittaci 6BC] gi|313848271|emb|CBY17272.1| putative transcription termination-related protein [Chlamydophila psittaci RD1] gi|325506888|gb|ADZ18526.1| transcription antitermination factor NusB [Chlamydophila psittaci 6BC] gi|328814662|gb|EGF84652.1| transcription antitermination factor NusB [Chlamydophila psittaci Cal10] gi|328914950|gb|AEB55783.1| transcription antitermination factor NusB [Chlamydophila psittaci 6BC] Length = 164 Score = 74.4 bits (182), Expect = 5e-12, Method: Composition-based stats. Identities = 29/140 (20%), Positives = 60/140 (42%), Gaps = 12/140 (8%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 + R +Q LY +D+ S ++ + E V + L + + I+ Sbjct: 22 KQKMREIVLQMLYALDMDPMSEESLVPLLMS-------ETAVTQKHASSALNFSKEIL-- 72 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135 + +DLLI+ + SF +L ++ ++LR + E + ++I+E + Sbjct: 73 --AKSSELDLLIAQT-VKNTSFEKLTLMEKNVLRLTLYEHFHGQPINTAILIAEATRLVK 129 Query: 136 DFFYGDEPKFINAVLDKVSR 155 F Y + F++AVL+ + R Sbjct: 130 KFSYVEACSFVHAVLNDIFR 149 >gi|62185353|ref|YP_220138.1| transcription antitermination protein NusB [Chlamydophila abortus S26/3] gi|62148420|emb|CAH64187.1| putative transcription termination-related protein [Chlamydophila abortus S26/3] Length = 164 Score = 74.4 bits (182), Expect = 5e-12, Method: Composition-based stats. Identities = 29/140 (20%), Positives = 60/140 (42%), Gaps = 12/140 (8%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 + R +Q LY +D+ S ++ + E V + L + + I+ Sbjct: 22 KQKMREIVLQMLYALDMDPMSEESLVPLLMS-------ETAVTQKHASSALNFSKEIL-- 72 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135 + +DLLI+ + SF +L ++ ++LR + E + ++I+E + Sbjct: 73 --AKSSELDLLIAQT-VKNTSFEKLTLMEKNVLRLTLYEHFHGQPINTAILIAEATRLVK 129 Query: 136 DFFYGDEPKFINAVLDKVSR 155 F Y + F++AVL+ + R Sbjct: 130 KFSYVEACSFVHAVLNDIFR 149 >gi|297748961|gb|ADI51507.1| N utilization substance protein B [Chlamydia trachomatis D-EC] gi|297749841|gb|ADI52519.1| N utilization substance protein B [Chlamydia trachomatis D-LC] Length = 176 Score = 74.4 bits (182), Expect = 5e-12, Method: Composition-based stats. Identities = 30/141 (21%), Positives = 57/141 (40%), Gaps = 15/141 (10%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 + R +QALY ++I ++S T E+ + + + Sbjct: 29 KQKLRELVLQALYALEIDPEGEDSLVSLLMT-----------EASVSKKNAAYALMFCRA 77 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHS---VPVEVIISEYVC 132 + + +D L+ + + + +RL +I +ILR + E + VPV V+I+E Sbjct: 78 IRANQPDLDALLDATI-RTTTLARLTIIERNILRMMLFEHQQNQDCCPVPVAVLIAETTR 136 Query: 133 IAHDFFYGDEPKFINAVLDKV 153 + F Y + I AVL + Sbjct: 137 LIKKFSYSEGSSLILAVLGSI 157 >gi|326389542|ref|ZP_08211109.1| sun protein [Thermoanaerobacter ethanolicus JW 200] gi|325994547|gb|EGD52972.1| sun protein [Thermoanaerobacter ethanolicus JW 200] Length = 444 Score = 74.4 bits (182), Expect = 5e-12, Method: Composition-based stats. Identities = 31/139 (22%), Positives = 56/139 (40%), Gaps = 16/139 (11%) Query: 20 RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79 R A + L E++S+ + L + +D + + ++ GV++R Sbjct: 4 REIAYKIL----------QEVLSKEAYANISFNKHLRSQE-LKEIDRGFTKELVFGVIER 52 Query: 80 KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139 K +D ++S + + + L G+ +L+ VP I+E V IA Sbjct: 53 KYTLDFILSFFVKKAPDLKTM-----IFLEMGLYQLLYMDKVPSYAAINETVNIAKKVLG 107 Query: 140 GDEPKFINAVLDKVSRKEE 158 FINAVL R++E Sbjct: 108 IKRANFINAVLRNYEREKE 126 >gi|210617187|ref|ZP_03291454.1| hypothetical protein CLONEX_03676 [Clostridium nexile DSM 1787] gi|210149462|gb|EEA80471.1| hypothetical protein CLONEX_03676 [Clostridium nexile DSM 1787] Length = 430 Score = 74.4 bits (182), Expect = 5e-12, Method: Composition-based stats. Identities = 20/104 (19%), Positives = 46/104 (44%), Gaps = 2/104 (1%) Query: 55 LDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLE 114 L+ + + + G ++R +D +I+ K +++ ++ +I+R+ V + Sbjct: 10 LNKYQYLDKKERAFITRVTEGTLERMIELDYIINQF--SKVKVNKMKPVIRNIIRSAVYQ 67 Query: 115 LIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEE 158 + SVP +E V +A + + F+N +L + R E Sbjct: 68 MKYMDSVPNSAACNEAVKLAVKKGFVNLKGFVNGLLRNIDRNLE 111 >gi|282916466|ref|ZP_06324228.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus aureus subsp. aureus D139] gi|283770278|ref|ZP_06343170.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus aureus subsp. aureus H19] gi|282319906|gb|EFB50254.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus aureus subsp. aureus D139] gi|283460425|gb|EFC07515.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus aureus subsp. aureus H19] Length = 435 Score = 74.4 bits (182), Expect = 5e-12, Method: Composition-based stats. Identities = 25/123 (20%), Positives = 50/123 (40%), Gaps = 6/123 (4%) Query: 35 CSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEK 94 + +I++E Y E+ E+ +D F I++G + RK +D + + K Sbjct: 11 DTIQDILNE-GAYSNLRINEVLSENELNIMDKALFTEIVYGTIKRKYTLDFYLKPFVKTK 69 Query: 95 WSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVS 154 + + +L + + + VP II+E V IA + +N +L + Sbjct: 70 -----IKAWVRQLLWMSIYQYVYLDKVPNHAIINEAVEIAKERGGYHNGNVVNGILRTMM 124 Query: 155 RKE 157 R + Sbjct: 125 RSD 127 >gi|166154176|ref|YP_001654294.1| transcription antitermination protein NusB [Chlamydia trachomatis 434/Bu] gi|166155051|ref|YP_001653306.1| transcription antitermination protein NusB [Chlamydia trachomatis L2b/UCH-1/proctitis] gi|301335421|ref|ZP_07223665.1| transcription antitermination protein NusB [Chlamydia trachomatis L2tet1] gi|238687432|sp|B0B961|NUSB_CHLT2 RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|238687451|sp|B0BAU0|NUSB_CHLTB RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|165930164|emb|CAP03648.1| Antitermination protein [Chlamydia trachomatis 434/Bu] gi|165931039|emb|CAP06602.1| Antitermination protein [Chlamydia trachomatis L2b/UCH-1/proctitis] Length = 168 Score = 74.4 bits (182), Expect = 5e-12, Method: Composition-based stats. Identities = 30/141 (21%), Positives = 57/141 (40%), Gaps = 15/141 (10%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 + R +QALY ++I ++S T E+ + + + Sbjct: 21 KQKLRELVLQALYALEIDPEGEDSLVSLLMT-----------EASVSKKNAAYALMFCRA 69 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHS---VPVEVIISEYVC 132 + + +D L+ + + + +RL +I +ILR + E + VPV V+I+E Sbjct: 70 IRANQPDLDALLDATI-RTTTLARLTIIERNILRMMLFEHQQNQDCCPVPVAVLIAETTR 128 Query: 133 IAHDFFYGDEPKFINAVLDKV 153 + F Y + I AVL + Sbjct: 129 LIKKFSYSEGSSLILAVLGSI 149 >gi|302035777|ref|YP_003796099.1| ribosomal RNA small subunit methyltransferase B [Candidatus Nitrospira defluvii] gi|300603841|emb|CBK40173.1| Ribosomal RNA small subunit methyltransferase B [Candidatus Nitrospira defluvii] Length = 449 Score = 74.4 bits (182), Expect = 5e-12, Method: Composition-based stats. Identities = 23/97 (23%), Positives = 42/97 (43%), Gaps = 5/97 (5%) Query: 65 DLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVE 124 D + ++ GV+ + +D + L ++L ++ +ILR G +L+ VP Sbjct: 31 DRAFMVELVRGVLRYRATLDWRLG--LLSDRRITKLPTLVQTILRLGAYQLLYLDRVPDS 88 Query: 125 VIISEYVCIAHDFF---YGDEPKFINAVLDKVSRKEE 158 ++E V + D F+NAVL + R E Sbjct: 89 AAVNESVQMTKQQSRRLGRDWSGFVNAVLRALLRSPE 125 >gi|260584743|ref|ZP_05852489.1| ribosomal RNA small subunit methyltransferase B [Granulicatella elegans ATCC 700633] gi|260157766|gb|EEW92836.1| ribosomal RNA small subunit methyltransferase B [Granulicatella elegans ATCC 700633] Length = 441 Score = 74.4 bits (182), Expect = 5e-12, Method: Composition-based stats. Identities = 21/117 (17%), Positives = 49/117 (41%), Gaps = 3/117 (2%) Query: 41 ISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRL 100 + + ++Y + ++ + + D + +G + RK ID ++ + + ++ Sbjct: 15 VEQDQSYSTISLKKVIEQQKWTAKDKGLLTELFYGTIQRKMTIDFYLAPYIQKA---KKI 71 Query: 101 DMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKE 157 + +LR + +++ +P I E V IA + KF+N VL R + Sbjct: 72 QPWVKQLLRISIYQMVFLDKIPDHAAIFEAVQIAKKRGHQGIAKFVNGVLRNFQRND 128 >gi|78778394|ref|YP_396506.1| transcription antitermination protein NusB [Prochlorococcus marinus str. MIT 9312] gi|78711893|gb|ABB49070.1| antitermination protein NusB [Prochlorococcus marinus str. MIT 9312] Length = 208 Score = 74.4 bits (182), Expect = 5e-12, Method: Composition-based stats. Identities = 22/81 (27%), Positives = 32/81 (39%), Gaps = 2/81 (2%) Query: 73 IHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVC 132 I ++ ID I + W RL I ILR I + PV V E V Sbjct: 124 ISKTINNLTIIDSDIDQAMD-GWKLKRLPRIDRDILRLA-YVDINFLNTPVAVACDEAVN 181 Query: 133 IAHDFFYGDEPKFINAVLDKV 153 +A+ + K IN +L ++ Sbjct: 182 LANKYSDMQGRKLINGILRRL 202 >gi|229828532|ref|ZP_04454601.1| hypothetical protein GCWU000342_00596 [Shuttleworthia satelles DSM 14600] gi|229793126|gb|EEP29240.1| hypothetical protein GCWU000342_00596 [Shuttleworthia satelles DSM 14600] Length = 429 Score = 74.4 bits (182), Expect = 6e-12, Method: Composition-based stats. Identities = 23/137 (16%), Positives = 54/137 (39%), Gaps = 15/137 (10%) Query: 20 RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79 R +Q L + ++ E LD + + + GV++R Sbjct: 4 REIVLQIL----------SAVLEEGAYSHLLLQAVLDKYAYLDKRQRAFISRLTVGVIER 53 Query: 80 KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCI-AHDFF 138 K +D +++ + ++ ++ + LR G+ +++ +VP +E V + A + Sbjct: 54 KISLDYILNHY--SRTPVKKMKPMIRNSLRMGLYQILYMDAVPDSAACNESVKLIARRYR 111 Query: 139 YGDEPKFINAVLDKVSR 155 F+N +L ++R Sbjct: 112 PLK--GFVNGLLRNIAR 126 >gi|241889945|ref|ZP_04777243.1| ribosomal RNA small subunit methyltransferase B [Gemella haemolysans ATCC 10379] gi|241863567|gb|EER67951.1| ribosomal RNA small subunit methyltransferase B [Gemella haemolysans ATCC 10379] Length = 441 Score = 74.4 bits (182), Expect = 6e-12, Method: Composition-based stats. Identities = 24/138 (17%), Positives = 50/138 (36%), Gaps = 16/138 (11%) Query: 19 ARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMD 78 AR A + LY I + +++Y + D + +++G + Sbjct: 6 ARHIAYEVLYTIIQEDGYSNITLNKYFNQYKVEEQ-----------DKRFISEVVYGSIK 54 Query: 79 RKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFF 138 K +++ ++ S R+ + IL + +L+ P +I E V + Sbjct: 55 NKLYLEHILKSYSKG-----RVKPKVKVILLMSIYQLLYMDKTPNFAVIDEAVKLGKKIA 109 Query: 139 YGDEPKFINAVLDKVSRK 156 KF+N +L + R Sbjct: 110 GNITGKFVNGILRNIERN 127 >gi|239636304|ref|ZP_04677306.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus warneri L37603] gi|239597659|gb|EEQ80154.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus warneri L37603] Length = 435 Score = 74.4 bits (182), Expect = 6e-12, Method: Composition-based stats. Identities = 24/122 (19%), Positives = 45/122 (36%), Gaps = 11/122 (9%) Query: 39 EIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLT---EKW 95 + I + Y E+ +D F +++G + RK +D + L + W Sbjct: 14 QAILDEGAYSNLEINEVLSTYEISDLDKGLFTELVYGTVKRKYTLDFYLKPFLKTKIKGW 73 Query: 96 SFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSR 155 + +L + + + VP II+E V IA + +N +L + R Sbjct: 74 --------VRELLWMSIYQYVYLDKVPNHAIINEAVEIAKEEGGYYTGNVVNGILRTIMR 125 Query: 156 KE 157 E Sbjct: 126 SE 127 >gi|307264803|ref|ZP_07546365.1| sun protein [Thermoanaerobacter wiegelii Rt8.B1] gi|306920061|gb|EFN50273.1| sun protein [Thermoanaerobacter wiegelii Rt8.B1] Length = 444 Score = 74.4 bits (182), Expect = 6e-12, Method: Composition-based stats. Identities = 31/139 (22%), Positives = 56/139 (40%), Gaps = 16/139 (11%) Query: 20 RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79 R A + L E++S+ + L + +D + + ++ GV++R Sbjct: 4 REIAYKIL----------QEVLSKEAYANISFNKHLRSQE-LKEIDRGFTKELVFGVIER 52 Query: 80 KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139 K +D ++S + + + L G+ +L+ VP I+E V IA Sbjct: 53 KYTLDFILSFFVKKAPDLKTM-----IFLEMGLYQLLYMDKVPSYAAINETVNIAKKVLG 107 Query: 140 GDEPKFINAVLDKVSRKEE 158 FINAVL R++E Sbjct: 108 IKRANFINAVLRNYEREKE 126 >gi|332670476|ref|YP_004453484.1| Fmu (Sun) domain-containing protein [Cellulomonas fimi ATCC 484] gi|332339514|gb|AEE46097.1| Fmu (Sun) domain protein [Cellulomonas fimi ATCC 484] Length = 568 Score = 74.4 bits (182), Expect = 6e-12, Method: Composition-based stats. Identities = 34/156 (21%), Positives = 59/156 (37%), Gaps = 17/156 (10%) Query: 4 QDNKKDLKLSHRRG---IARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESV 60 + + + RR AR AA L ++E + Y + E Sbjct: 45 RGTRTSAAPAQRRRSGDAARRAAFDTL-----------RAVAEGDAYANLVLPPMLRERG 93 Query: 61 YLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHS 120 D + + +G + + D ++ L R+D + +LR G +L+ Sbjct: 94 VQGRDAAFATELAYGTLRLRGRYDAVVE--LAAARPVDRIDAPVLDLLRLGTHQLLGMR- 150 Query: 121 VPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRK 156 VP +SE V +A + +F+NAVL VSR+ Sbjct: 151 VPAHAAVSETVGLAREVTGAGPAQFVNAVLRAVSRE 186 >gi|257886037|ref|ZP_05665690.1| rRNA SAM-dependent methyltransferase [Enterococcus faecium 1,231,501] gi|257821893|gb|EEV49023.1| rRNA SAM-dependent methyltransferase [Enterococcus faecium 1,231,501] Length = 452 Score = 74.0 bits (181), Expect = 6e-12, Method: Composition-based stats. Identities = 23/104 (22%), Positives = 45/104 (43%), Gaps = 3/104 (2%) Query: 53 TELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGV 112 E+ +S D+ F +I+G + ++ ++ ++ + + D + ++L V Sbjct: 35 NEMIKQSELNQKDVGLFTELIYGTISHQRLLEFYVAPLIAKAKKVD--DWV-KTLLYLSV 91 Query: 113 LELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRK 156 +L VP I++E V IA KF+N VL R+ Sbjct: 92 YQLEFLDKVPAHAILNEAVEIAKVKGNPGTGKFVNGVLRNYQRQ 135 >gi|332799419|ref|YP_004460918.1| sun protein [Tepidanaerobacter sp. Re1] gi|332697154|gb|AEE91611.1| sun protein [Tepidanaerobacter sp. Re1] Length = 448 Score = 74.0 bits (181), Expect = 6e-12, Method: Composition-based stats. Identities = 23/100 (23%), Positives = 41/100 (41%), Gaps = 2/100 (2%) Query: 59 SVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIEC 118 S D +++GV+ ID +IS K S++ + + +R G+ + Sbjct: 31 SDMSLKDRALVTELVNGVVQNLLRIDYIISQF--SKIDLSKISPFVKNAIRVGIYQTFFL 88 Query: 119 HSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEE 158 VP ++E V + + F NA+L V RK + Sbjct: 89 DRVPDFAAVNESVSLVKKYEGKRAANFTNAILRNVLRKRD 128 >gi|167037728|ref|YP_001665306.1| sun protein [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|320116143|ref|YP_004186302.1| sun protein [Thermoanaerobacter brockii subsp. finnii Ako-1] gi|166856562|gb|ABY94970.1| sun protein [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|319929234|gb|ADV79919.1| sun protein [Thermoanaerobacter brockii subsp. finnii Ako-1] Length = 444 Score = 74.0 bits (181), Expect = 6e-12, Method: Composition-based stats. Identities = 31/139 (22%), Positives = 56/139 (40%), Gaps = 16/139 (11%) Query: 20 RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79 R A + L E++S+ + L + +D + + ++ GV++R Sbjct: 4 REIAYKIL----------QEVLSKEAYANISFNKHLKGQE-LKEIDRGFTKELVFGVIER 52 Query: 80 KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139 K +D ++S + + + L G+ +L+ VP I+E V IA Sbjct: 53 KYTLDFILSFFVKKAPDLKTM-----IFLEMGLYQLLYMDKVPSYAAINETVNIAKKVLG 107 Query: 140 GDEPKFINAVLDKVSRKEE 158 FINAVL R++E Sbjct: 108 IKRANFINAVLRNYDREKE 126 >gi|182439855|ref|YP_001827574.1| putative RNA-binding Sun protein [Streptomyces griseus subsp. griseus NBRC 13350] gi|178468371|dbj|BAG22891.1| putative RNA-binding Sun protein [Streptomyces griseus subsp. griseus NBRC 13350] Length = 477 Score = 74.0 bits (181), Expect = 6e-12, Method: Composition-based stats. Identities = 31/155 (20%), Positives = 60/155 (38%), Gaps = 12/155 (7%) Query: 1 MTIQDNKKDLKLSHR--RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVE 58 M Q ++ K R + R A +AL +D ++ + + Sbjct: 1 MNDQPRRRPAKPHRRPKKDPVRFLAFEALRAVDERDAYANLVLPPLL-------KKARAK 53 Query: 59 SVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIEC 118 + D +++G + R+ D ++++C+ +D + +L GV +L+ Sbjct: 54 GDFDARDAALATELVYGTLRRQGTYDAIVAACIDR--PLREVDPPVLDVLNMGVHQLLGT 111 Query: 119 HSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKV 153 +P +S V +A KF+NAVL KV Sbjct: 112 R-IPTHAAVSASVELARVVLGEGRAKFVNAVLRKV 145 >gi|307326811|ref|ZP_07606003.1| Fmu (Sun) domain protein [Streptomyces violaceusniger Tu 4113] gi|306887574|gb|EFN18568.1| Fmu (Sun) domain protein [Streptomyces violaceusniger Tu 4113] Length = 489 Score = 74.0 bits (181), Expect = 7e-12, Method: Composition-based stats. Identities = 25/135 (18%), Positives = 53/135 (39%), Gaps = 5/135 (3%) Query: 20 RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79 R+ A +AL +D ++ R ++ + D +++G + Sbjct: 29 RILAFEALRAVDERDAYANLVLPPLL--RKARESAEAGGPRFDARDAALATELVYGTLRH 86 Query: 80 KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139 + D +I+ C+ +D + +L G +L+ +P +S V +A Sbjct: 87 QGTYDAIIAECVDR--PLREVDPPVLDVLNLGAHQLLGTR-IPTHAAVSASVELARVVLG 143 Query: 140 GDEPKFINAVLDKVS 154 KF+NAVL +++ Sbjct: 144 DGRAKFVNAVLRRIA 158 >gi|258592639|emb|CBE68948.1| Sun protein [NC10 bacterium 'Dutch sediment'] Length = 467 Score = 74.0 bits (181), Expect = 7e-12, Method: Composition-based stats. Identities = 29/139 (20%), Positives = 56/139 (40%), Gaps = 17/139 (12%) Query: 19 ARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMD 78 AR A + L T++ + D +L ++ D + +GV+ Sbjct: 18 ARRLAFEIL----------TQVEEQQAYASLLLDAKLK-QARLSQQDRALATELTYGVLR 66 Query: 79 RKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFF 138 + +D L+++ W R+D L +LR G +++ VP ++E V +A D Sbjct: 67 WQGRLDYLLAAVTDRPW--DRVDPALRRLLRLGAYQILFLTRVPAYAAVNETVALAQDVM 124 Query: 139 YGD----EPKFINAVLDKV 153 F+NA+L ++ Sbjct: 125 RSQLKPVAKAFVNAILRRL 143 >gi|257882565|ref|ZP_05662218.1| rRNA SAM-dependent methyltransferase [Enterococcus faecium 1,231,502] gi|257818223|gb|EEV45551.1| rRNA SAM-dependent methyltransferase [Enterococcus faecium 1,231,502] Length = 452 Score = 74.0 bits (181), Expect = 7e-12, Method: Composition-based stats. Identities = 24/116 (20%), Positives = 45/116 (38%), Gaps = 3/116 (2%) Query: 53 TELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGV 112 E+ +S D+ F +I+G + ++ ++ ++ + + + +L V Sbjct: 35 NEMIKQSELNQKDVGLFTELIYGTISHQRLLEFYVAPLIAKAKKVDDWVKM---LLYLSV 91 Query: 113 LELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRSGCVSAI 168 +L VP I++E V IA KF+N VL R+ G I Sbjct: 92 YQLEFLDKVPAHAILNEAVEIAKVKGNPGTGKFVNGVLRNYQRQGAPDLQGIADPI 147 >gi|239939911|ref|ZP_04691848.1| putative RNA-binding Sun protein [Streptomyces roseosporus NRRL 15998] gi|239986397|ref|ZP_04707061.1| putative RNA-binding Sun protein [Streptomyces roseosporus NRRL 11379] gi|291443343|ref|ZP_06582733.1| RNA-binding Sun family protein [Streptomyces roseosporus NRRL 15998] gi|291346290|gb|EFE73194.1| RNA-binding Sun family protein [Streptomyces roseosporus NRRL 15998] Length = 477 Score = 74.0 bits (181), Expect = 7e-12, Method: Composition-based stats. Identities = 31/155 (20%), Positives = 60/155 (38%), Gaps = 12/155 (7%) Query: 1 MTIQDNKKDLKLSHR--RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVE 58 M Q ++ K R + R A +AL +D ++ + + Sbjct: 1 MNDQPRRRPAKPHRRPKKDPVRFLAFEALRAVDERDAYANLVLPPLL-------KKARAK 53 Query: 59 SVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIEC 118 + D +++G + R+ D ++++C+ +D + +L GV +L+ Sbjct: 54 GDFDGRDAALATELVYGTLRRQGTYDAIVAACIDR--PLREVDPPVLDVLNMGVHQLLGT 111 Query: 119 HSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKV 153 +P +S V +A KF+NAVL KV Sbjct: 112 R-IPTHAAVSASVELARVVLGEGRAKFVNAVLRKV 145 >gi|297834138|ref|XP_002884951.1| NOL1/NOP2/sun family protein [Arabidopsis lyrata subsp. lyrata] gi|297330791|gb|EFH61210.1| NOL1/NOP2/sun family protein [Arabidopsis lyrata subsp. lyrata] Length = 525 Score = 74.0 bits (181), Expect = 7e-12, Method: Composition-based stats. Identities = 24/88 (27%), Positives = 44/88 (50%), Gaps = 1/88 (1%) Query: 71 VIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEY 130 ++ G + ++++D LI S + +F ++ +L ILR GV E+I+ P V+ E Sbjct: 116 DVVGGTIRWRRYLDHLIGSLCHNERTFRNMEPLLLQILRIGVYEIIKRDMPPYAVV-DEN 174 Query: 131 VCIAHDFFYGDEPKFINAVLDKVSRKEE 158 V +A F+N +L K+ +E Sbjct: 175 VRLAKVALRPGAGDFVNGILRKLVSLKE 202 >gi|10172606|dbj|BAB01410.1| unnamed protein product [Arabidopsis thaliana] Length = 531 Score = 74.0 bits (181), Expect = 7e-12, Method: Composition-based stats. Identities = 24/88 (27%), Positives = 44/88 (50%), Gaps = 1/88 (1%) Query: 71 VIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEY 130 ++ G + ++++D LI S + +F ++ +L ILR GV E+I+ P V+ E Sbjct: 122 DVVGGTIRWRRYLDHLIGSLCHNERTFRNMEPLLLQILRIGVYEIIKRDMPPYAVV-DEN 180 Query: 131 VCIAHDFFYGDEPKFINAVLDKVSRKEE 158 V +A F+N +L K+ +E Sbjct: 181 VRLAKVALRPGAGDFVNGILRKLVSLKE 208 >gi|294623688|ref|ZP_06702521.1| ribosomal RNA small subunit methyltransferase B [Enterococcus faecium U0317] gi|291596903|gb|EFF28121.1| ribosomal RNA small subunit methyltransferase B [Enterococcus faecium U0317] Length = 445 Score = 74.0 bits (181), Expect = 7e-12, Method: Composition-based stats. Identities = 24/116 (20%), Positives = 45/116 (38%), Gaps = 3/116 (2%) Query: 53 TELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGV 112 E+ +S D+ F +I+G + ++ ++ ++ + + + +L V Sbjct: 28 NEMIKQSELNQKDVGLFTELIYGTISHQRLLEFYVAPLIAKAKKVDDWVKM---LLYLSV 84 Query: 113 LELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRSGCVSAI 168 +L VP I++E V IA KF+N VL R+ G I Sbjct: 85 YQLEFLDKVPAHAILNEAVEIAKVKGNPGTGKFVNGVLRNYQRQGAPDLQGIADPI 140 >gi|15605567|ref|NP_220353.1| transcription antitermination protein NusB [Chlamydia trachomatis D/UW-3/CX] gi|7387974|sp|O84839|NUSB_CHLTR RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|3329303|gb|AAC68429.1| Transcription termination factor [Chlamydia trachomatis D/UW-3/CX] gi|296436388|gb|ADH18562.1| transcription antitermination protein NusB [Chlamydia trachomatis G/9768] gi|296437319|gb|ADH19489.1| transcription antitermination protein NusB [Chlamydia trachomatis G/11222] gi|296438247|gb|ADH20408.1| transcription antitermination protein NusB [Chlamydia trachomatis G/11074] gi|297140748|gb|ADH97506.1| transcription antitermination protein NusB [Chlamydia trachomatis G/9301] Length = 168 Score = 74.0 bits (181), Expect = 7e-12, Method: Composition-based stats. Identities = 30/141 (21%), Positives = 57/141 (40%), Gaps = 15/141 (10%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 + R +QALY ++I ++S T E+ + + + Sbjct: 21 KQKLRELVLQALYALEIDPEGEDSLVSLLMT-----------EASVSKKNAAYALMFCRA 69 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHS---VPVEVIISEYVC 132 + + +D L+ + + + +RL +I +ILR + E + VPV V+I+E Sbjct: 70 IRANQPDLDALLDATI-RTTTLARLTIIERNILRMMLFEHQQNQDCCPVPVAVLIAETTR 128 Query: 133 IAHDFFYGDEPKFINAVLDKV 153 + F Y + I AVL + Sbjct: 129 LIKKFSYSEGSSLILAVLGSI 149 >gi|294500982|ref|YP_003564682.1| ribosomal RNA small subunit methyltransferase B [Bacillus megaterium QM B1551] gi|294350919|gb|ADE71248.1| ribosomal RNA small subunit methyltransferase B [Bacillus megaterium QM B1551] Length = 446 Score = 74.0 bits (181), Expect = 7e-12, Method: Composition-based stats. Identities = 20/91 (21%), Positives = 39/91 (42%), Gaps = 3/91 (3%) Query: 65 DLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVE 124 D I++G + R+ +D ++ L + +L + +LR + +++ VP Sbjct: 41 DAGLLTEIVYGTIQRRDTLDYGLAPFLK---NPKKLQPWVRVLLRLSLYQMVYLDRVPDR 97 Query: 125 VIISEYVCIAHDFFYGDEPKFINAVLDKVSR 155 I+ E V IA + +N VL + R Sbjct: 98 AILHEAVEIAKKRGHKGIASMVNGVLRNIQR 128 >gi|52785554|ref|YP_091383.1| YloM [Bacillus licheniformis ATCC 14580] gi|163119428|ref|YP_078968.2| rRNA SAM-dependent methyltransferase RmsB [Bacillus licheniformis ATCC 14580] gi|52348056|gb|AAU40690.1| YloM [Bacillus licheniformis ATCC 14580] gi|145902935|gb|AAU23330.2| rRNA SAM-dependent methyltransferase RmsB [Bacillus licheniformis ATCC 14580] Length = 448 Score = 74.0 bits (181), Expect = 7e-12, Method: Composition-based stats. Identities = 24/146 (16%), Positives = 50/146 (34%), Gaps = 24/146 (16%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 + R A+ AL ++D + ++ +D D +++G Sbjct: 2 KNNVREVALDALIKLDQNQAYSNLLLQSAMKANDLSDK-----------DRGLLTELVYG 50 Query: 76 VMDRKQHIDLLISSCLTE-----KWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEY 130 + K +D ++ + + W +LR + ++ +P + E Sbjct: 51 TLQNKLALDYMLKPFIKKPEKVKDWVIH--------LLRMSLYQMEYLEKIPDRAALFEA 102 Query: 131 VCIAHDFFYGDEPKFINAVLDKVSRK 156 V IA + F+N VL V R+ Sbjct: 103 VEIAKRRGHKGISSFVNGVLRSVQRE 128 >gi|88809354|ref|ZP_01124862.1| transcription antitermination protein NusB [Synechococcus sp. WH 7805] gi|88786573|gb|EAR17732.1| transcription antitermination protein NusB [Synechococcus sp. WH 7805] Length = 210 Score = 74.0 bits (181), Expect = 7e-12, Method: Composition-based stats. Identities = 24/81 (29%), Positives = 38/81 (46%), Gaps = 2/81 (2%) Query: 73 IHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVC 132 + V+D + +D + + E W SRL I ILR V++L P V SE V Sbjct: 123 VQLVLDARASLDDQLDGVM-EGWRLSRLPRIDRDILRLAVVDLQTMK-TPASVACSEAVE 180 Query: 133 IAHDFFYGDEPKFINAVLDKV 153 +A+ + + IN VL ++ Sbjct: 181 LANRYSDEQGRRMINGVLRRL 201 >gi|326780519|ref|ZP_08239784.1| Fmu (Sun) domain protein [Streptomyces cf. griseus XylebKG-1] gi|326660852|gb|EGE45698.1| Fmu (Sun) domain protein [Streptomyces cf. griseus XylebKG-1] Length = 477 Score = 74.0 bits (181), Expect = 7e-12, Method: Composition-based stats. Identities = 31/155 (20%), Positives = 60/155 (38%), Gaps = 12/155 (7%) Query: 1 MTIQDNKKDLKLSHR--RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVE 58 M Q ++ K R + R A +AL +D ++ + + Sbjct: 1 MNDQPRRRPAKPHRRPKKDPVRFLAFEALRAVDERDAYANLVLPPLL-------KKARAK 53 Query: 59 SVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIEC 118 + D +++G + R+ D ++++C+ +D + +L GV +L+ Sbjct: 54 GDFDARDAALATELVYGTLRRQGTYDAIVAACIDR--PLREVDPPVLDVLNMGVHQLLGT 111 Query: 119 HSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKV 153 +P +S V +A KF+NAVL KV Sbjct: 112 R-IPTHAAVSASVELARVVLGEGRAKFVNAVLRKV 145 >gi|319646043|ref|ZP_08000273.1| YloM protein [Bacillus sp. BT1B_CT2] gi|317391793|gb|EFV72590.1| YloM protein [Bacillus sp. BT1B_CT2] Length = 444 Score = 74.0 bits (181), Expect = 7e-12, Method: Composition-based stats. Identities = 24/142 (16%), Positives = 49/142 (34%), Gaps = 24/142 (16%) Query: 20 RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79 R A+ AL ++D + ++ +D D +++G + Sbjct: 2 REVALDALIKLDQNQAYSNLLLQSAMKANDLSDK-----------DRGLLTELVYGTLQN 50 Query: 80 KQHIDLLISSCLTE-----KWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134 K +D ++ + + W +LR + ++ +P + E V IA Sbjct: 51 KLALDYMLKPFIKKPEKVKDWVIH--------LLRMSLYQMEYLEKIPDRAALFEAVEIA 102 Query: 135 HDFFYGDEPKFINAVLDKVSRK 156 + F+N VL V R+ Sbjct: 103 KRRGHKGISSFVNGVLRSVQRE 124 >gi|330685494|gb|EGG97147.1| NusB family protein [Staphylococcus epidermidis VCU121] Length = 228 Score = 74.0 bits (181), Expect = 7e-12, Method: Composition-based stats. Identities = 24/122 (19%), Positives = 45/122 (36%), Gaps = 11/122 (9%) Query: 39 EIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLT---EKW 95 + I + Y E+ +D F +++G + RK +D + L + W Sbjct: 14 QAILDEGAYSNLEINEVLSTYEISDLDKGLFTELVYGTVKRKYTLDFYLKPFLKTKIKGW 73 Query: 96 SFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSR 155 + +L + + + VP II+E V IA + +N +L + R Sbjct: 74 --------VRELLWMSIYQYVYLDKVPDHAIINEAVEIAKEEGGYYTGNVVNGILRNIMR 125 Query: 156 KE 157 E Sbjct: 126 SE 127 >gi|224500053|ref|ZP_03668402.1| hypothetical protein LmonF1_10399 [Listeria monocytogenes Finland 1988] Length = 399 Score = 74.0 bits (181), Expect = 7e-12, Method: Composition-based stats. Identities = 24/89 (26%), Positives = 40/89 (44%), Gaps = 11/89 (12%) Query: 71 VIIHGVMDRKQHIDLLISSCLTE---KWSFSRLDMILCSILRAGVLELIECHSVPVEVII 127 +++G RK +D ++ L + W + ++LR V +L VP I+ Sbjct: 3 ELVYGTTQRKITLDYYLAPFLNKEPDNW--------VKNLLRMSVYQLTYLDKVPEHAIL 54 Query: 128 SEYVCIAHDFFYGDEPKFINAVLDKVSRK 156 +E IA + + KF+N VL V RK Sbjct: 55 NEAGDIAKNMGHQGVTKFVNGVLRNVIRK 83 >gi|297195546|ref|ZP_06912944.1| RNA-binding Sun protein [Streptomyces pristinaespiralis ATCC 25486] gi|297152839|gb|EDY65275.2| RNA-binding Sun protein [Streptomyces pristinaespiralis ATCC 25486] Length = 291 Score = 74.0 bits (181), Expect = 7e-12, Method: Composition-based stats. Identities = 32/157 (20%), Positives = 61/157 (38%), Gaps = 12/157 (7%) Query: 1 MTIQDNKKDLKLSHR--RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVE 58 M+ Q + K R + R+ A +AL +D ++ D Sbjct: 1 MSEQSRHRPAKPYRRPKKDPVRILAFEALRAVDERDAYANLVLPPLLKKAREKD------ 54 Query: 59 SVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIEC 118 + D +++G + R+ D +I++C+ +D + +L G +L+ Sbjct: 55 -DFDGRDAALATELVYGTLRRQGTYDAIIAACIDR--PLREVDPPVLDVLALGAHQLLGT 111 Query: 119 HSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSR 155 +P +S V +A KF+NAVL K+S+ Sbjct: 112 R-IPTHAAVSASVELARVVLGDGRAKFVNAVLRKISQ 147 >gi|94266030|ref|ZP_01289751.1| Fmu, rRNA SAM-dependent methyltransferase [delta proteobacterium MLMS-1] gi|93453425|gb|EAT03847.1| Fmu, rRNA SAM-dependent methyltransferase [delta proteobacterium MLMS-1] Length = 487 Score = 74.0 bits (181), Expect = 7e-12, Method: Composition-based stats. Identities = 29/149 (19%), Positives = 60/149 (40%), Gaps = 21/149 (14%) Query: 20 RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79 R A+Q L + G +++ AD D +++GV+ Sbjct: 8 RQVALQLLLAQEQSGQPVEQLLEHQLREHPLAD----------GRDRRLLEALVYGVLRW 57 Query: 80 KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139 + +D +++ +++ + + LR G+L+L+ +P I+E + Sbjct: 58 RGLLDQVVAGYARH--PLAKMKPLTLAALRLGILQLLILERLPASAAINETI---KALRA 112 Query: 140 GDEPK----FINAVLDKVSRKEEIKRSGC 164 +P+ F+NAVL K + +I+R G Sbjct: 113 ARQPRWLTGFVNAVLRKAA--ADIERLGR 139 >gi|168207268|ref|ZP_02633273.1| ribosomal RNA small subunit methyltransferase B [Clostridium perfringens E str. JGS1987] gi|169342659|ref|ZP_02629420.2| ribosomal RNA small subunit methyltransferase B [Clostridium perfringens C str. JGS1495] gi|169299165|gb|EDS81235.1| ribosomal RNA small subunit methyltransferase B [Clostridium perfringens C str. JGS1495] gi|170661376|gb|EDT14059.1| ribosomal RNA small subunit methyltransferase B [Clostridium perfringens E str. JGS1987] Length = 442 Score = 74.0 bits (181), Expect = 8e-12, Method: Composition-based stats. Identities = 26/123 (21%), Positives = 57/123 (46%), Gaps = 7/123 (5%) Query: 39 EIISEYETYRFCADTELDVESVYLHVDLE---WFRVIIHGVMDRKQHIDLLISSCLTEKW 95 EI+ ++ E++ + +D + +++G + K+ ID+++SS + Sbjct: 9 EILDNVLLNGAYSNIEINKQFASNDIDPKDKGLITEVVYGTIKYKKMIDIILSSFVA--- 65 Query: 96 SFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSR 155 ++D + +ILR+ + ++ VP I++E V + + + KF+N VL R Sbjct: 66 DIGKIDESVVNILRSAIYQMKFLDRVPPYAIVNEAVNLTKE-TEPNLAKFVNGVLRNYLR 124 Query: 156 KEE 158 E Sbjct: 125 NEN 127 >gi|295706330|ref|YP_003599405.1| ribosomal RNA small subunit methyltransferase B [Bacillus megaterium DSM 319] gi|294803989|gb|ADF41055.1| ribosomal RNA small subunit methyltransferase B [Bacillus megaterium DSM 319] Length = 446 Score = 73.6 bits (180), Expect = 8e-12, Method: Composition-based stats. Identities = 20/91 (21%), Positives = 39/91 (42%), Gaps = 3/91 (3%) Query: 65 DLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVE 124 D I++G + R+ +D ++ L + +L + +LR + +++ VP Sbjct: 41 DAGLLTEIVYGTIQRRDTLDYGLAPFLK---NPKKLQPWVRVLLRLSLYQMVYLDRVPDR 97 Query: 125 VIISEYVCIAHDFFYGDEPKFINAVLDKVSR 155 I+ E V IA + +N VL + R Sbjct: 98 AILHEAVEIAKKRGHKGIASMVNGVLRNIQR 128 >gi|168210626|ref|ZP_02636251.1| ribosomal RNA small subunit methyltransferase B [Clostridium perfringens B str. ATCC 3626] gi|168214218|ref|ZP_02639843.1| ribosomal RNA small subunit methyltransferase B [Clostridium perfringens CPE str. F4969] gi|168217028|ref|ZP_02642653.1| ribosomal RNA small subunit methyltransferase B [Clostridium perfringens NCTC 8239] gi|182625836|ref|ZP_02953602.1| ribosomal RNA small subunit methyltransferase B [Clostridium perfringens D str. JGS1721] gi|170711319|gb|EDT23501.1| ribosomal RNA small subunit methyltransferase B [Clostridium perfringens B str. ATCC 3626] gi|170714316|gb|EDT26498.1| ribosomal RNA small subunit methyltransferase B [Clostridium perfringens CPE str. F4969] gi|177908870|gb|EDT71362.1| ribosomal RNA small subunit methyltransferase B [Clostridium perfringens D str. JGS1721] gi|182380885|gb|EDT78364.1| ribosomal RNA small subunit methyltransferase B [Clostridium perfringens NCTC 8239] Length = 442 Score = 73.6 bits (180), Expect = 8e-12, Method: Composition-based stats. Identities = 26/123 (21%), Positives = 57/123 (46%), Gaps = 7/123 (5%) Query: 39 EIISEYETYRFCADTELDVESVYLHVDLE---WFRVIIHGVMDRKQHIDLLISSCLTEKW 95 EI+ ++ E++ + +D + +++G + K+ ID+++SS + Sbjct: 9 EILDNVLLNGAYSNIEINKQFASNDIDPKDKGLITEVVYGTIKYKKMIDIILSSFVA--- 65 Query: 96 SFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSR 155 ++D + +ILR+ + ++ VP I++E V + + + KF+N VL R Sbjct: 66 DIGKIDESVVNILRSAIYQMKFLDRVPPYAIVNEAVNLTKE-TEPNLAKFVNGVLRNYLR 124 Query: 156 KEE 158 E Sbjct: 125 NEN 127 >gi|242373505|ref|ZP_04819079.1| rRNA (cytosine-5-)-methyltransferase [Staphylococcus epidermidis M23864:W1] gi|242348868|gb|EES40470.1| rRNA (cytosine-5-)-methyltransferase [Staphylococcus epidermidis M23864:W1] Length = 435 Score = 73.6 bits (180), Expect = 8e-12, Method: Composition-based stats. Identities = 22/126 (17%), Positives = 49/126 (38%), Gaps = 12/126 (9%) Query: 35 CSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLT-- 92 + +++++ Y E+ + VD + +++G + RK +D ++ + Sbjct: 11 DTIQQVLND-GAYSNLKINEVLSSNEISTVDRNLYTELVYGTIKRKYTLDYILKPFVKTK 69 Query: 93 -EKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLD 151 + W + +L + + + VP II+E V IA +N +L Sbjct: 70 IKGW--------MRQLLWMSIYQYVYLDKVPDHAIINEAVDIAKHRGGYHNGNVVNGILR 121 Query: 152 KVSRKE 157 + R E Sbjct: 122 SIMRSE 127 >gi|329938919|ref|ZP_08288293.1| ribosomal RNA small subunit methyltransferase B [Streptomyces griseoaurantiacus M045] gi|329301804|gb|EGG45697.1| ribosomal RNA small subunit methyltransferase B [Streptomyces griseoaurantiacus M045] Length = 472 Score = 73.6 bits (180), Expect = 8e-12, Method: Composition-based stats. Identities = 33/159 (20%), Positives = 61/159 (38%), Gaps = 14/159 (8%) Query: 1 MTIQDNK--KDLKLSHR--RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELD 56 M+ Q + K K R + R A +AL +D ++ D Sbjct: 1 MSDQSRRPRKPGKPYRRPQKDPVRFLAFEALRAVDERDAYANLVLPPLLRKAREQD---- 56 Query: 57 VESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELI 116 + D +++G + R+ D ++++C+ +D + +L G +L+ Sbjct: 57 ---GFDGRDAALATELVYGTLRRQGTYDAILAACVDR--PLREVDPPVLDVLSLGAHQLL 111 Query: 117 ECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSR 155 +P +S V +A KF+NAVL KV+R Sbjct: 112 GTR-IPTHAAVSASVELARVVLGDGRAKFVNAVLRKVAR 149 >gi|120403672|ref|YP_953501.1| Fmu (Sun) domain-containing protein [Mycobacterium vanbaalenii PYR-1] gi|119956490|gb|ABM13495.1| Fmu (Sun) domain protein [Mycobacterium vanbaalenii PYR-1] Length = 449 Score = 73.6 bits (180), Expect = 8e-12, Method: Composition-based stats. Identities = 32/149 (21%), Positives = 57/149 (38%), Gaps = 15/149 (10%) Query: 12 LSHRR-GIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFR 70 + +R AR AA L +SE + Y A L + D + Sbjct: 1 MKRKRLDPARQAAFDVL-----------RAVSERDAYANLALPALLRDRGITGRDAAFAT 49 Query: 71 VIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEY 130 + +G + +D +I++ ++D +L +LR G +L+ V +S Sbjct: 50 ELTYGTCRTRGLLDAVIAAA--AGRPVDKIDPVLLDLLRLGSYQLL-RTRVDDHAAVSTT 106 Query: 131 VCIAHDFFYGDEPKFINAVLDKVSRKEEI 159 V A F F+N VL ++R++E Sbjct: 107 VDQAGIEFDSSRAGFVNGVLRTIARRDEA 135 >gi|315658498|ref|ZP_07911370.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus lugdunensis M23590] gi|315496827|gb|EFU85150.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus lugdunensis M23590] Length = 435 Score = 73.6 bits (180), Expect = 8e-12, Method: Composition-based stats. Identities = 24/126 (19%), Positives = 48/126 (38%), Gaps = 12/126 (9%) Query: 35 CSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLT-- 92 S I++E Y ++ VD + +++G + RK +D + + Sbjct: 11 DSIHAILNE-GAYSNLEINDVLSSQDLSAVDKGLYTELVYGTIKRKFTLDYYLRPFVQTK 69 Query: 93 -EKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLD 151 + W + +L + + + VP II+E V IA +NA+L Sbjct: 70 IKGW--------VRQLLWMSIYQYVYLDKVPNHAIINEAVEIAKHRGGPHNGNIVNAILR 121 Query: 152 KVSRKE 157 ++ R + Sbjct: 122 QIMRSD 127 >gi|29833420|ref|NP_828054.1| RNA-binding Sun protein [Streptomyces avermitilis MA-4680] gi|29610543|dbj|BAC74589.1| putative RNA-binding Sun protein [Streptomyces avermitilis MA-4680] Length = 476 Score = 73.6 bits (180), Expect = 8e-12, Method: Composition-based stats. Identities = 33/159 (20%), Positives = 63/159 (39%), Gaps = 14/159 (8%) Query: 1 MTIQDN--KKDLKLSHR--RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELD 56 M+ Q +K K R + R A +AL +D ++ + Sbjct: 1 MSEQSRQPRKPGKPHRRPQKDPVRFLAFEALRAVDERDAYANLVLPPLLR-------KAR 53 Query: 57 VESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELI 116 + + D +++G + R+ D +I++C+ +D + +L GV +L+ Sbjct: 54 QKGDFDGRDAALATELVYGTLRRQGTYDAVIAACVDR--PLREVDPPVLDVLSLGVHQLL 111 Query: 117 ECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSR 155 +P +S V +A KF+NAVL KV++ Sbjct: 112 GTR-IPTHAAVSASVELARVVLGDGRAKFVNAVLRKVAQ 149 >gi|167040389|ref|YP_001663374.1| sun protein [Thermoanaerobacter sp. X514] gi|256752273|ref|ZP_05493136.1| sun protein [Thermoanaerobacter ethanolicus CCSD1] gi|300914473|ref|ZP_07131789.1| sun protein [Thermoanaerobacter sp. X561] gi|307724291|ref|YP_003904042.1| sun protein [Thermoanaerobacter sp. X513] gi|166854629|gb|ABY93038.1| sun protein [Thermoanaerobacter sp. X514] gi|256748841|gb|EEU61882.1| sun protein [Thermoanaerobacter ethanolicus CCSD1] gi|300889408|gb|EFK84554.1| sun protein [Thermoanaerobacter sp. X561] gi|307581352|gb|ADN54751.1| sun protein [Thermoanaerobacter sp. X513] Length = 444 Score = 73.6 bits (180), Expect = 8e-12, Method: Composition-based stats. Identities = 31/139 (22%), Positives = 56/139 (40%), Gaps = 16/139 (11%) Query: 20 RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79 R A + L E++S+ + L + +D + + ++ GV++R Sbjct: 4 REIAYKIL----------QEVLSKEAYANISFNKHLKGQE-LKEIDRGFTKELVFGVIER 52 Query: 80 KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139 K +D ++S + + + L G+ +L+ VP I+E V IA Sbjct: 53 KYTLDFILSFFVNKAPDLKTM-----IFLEMGLYQLLYMDKVPSYAAINETVNIAKKVLG 107 Query: 140 GDEPKFINAVLDKVSRKEE 158 FINAVL R++E Sbjct: 108 IKRANFINAVLRNYDREKE 126 >gi|22331043|ref|NP_187924.2| NOL1/NOP2/sun family protein / antitermination NusB domain-containing protein [Arabidopsis thaliana] gi|18176252|gb|AAL60011.1| putative sun protein fmu [Arabidopsis thaliana] gi|21436219|gb|AAM51397.1| putative sun protein fmu [Arabidopsis thaliana] gi|110740623|dbj|BAE98415.1| putative sun (fmu) protein [Arabidopsis thaliana] gi|332641785|gb|AEE75306.1| ribosomal RNA small subunit methyltransferase B [Arabidopsis thaliana] Length = 523 Score = 73.6 bits (180), Expect = 8e-12, Method: Composition-based stats. Identities = 24/88 (27%), Positives = 44/88 (50%), Gaps = 1/88 (1%) Query: 71 VIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEY 130 ++ G + ++++D LI S + +F ++ +L ILR GV E+I+ P V+ E Sbjct: 114 DVVGGTIRWRRYLDHLIGSLCHNERTFRNMEPLLLQILRIGVYEIIKRDMPPYAVV-DEN 172 Query: 131 VCIAHDFFYGDEPKFINAVLDKVSRKEE 158 V +A F+N +L K+ +E Sbjct: 173 VRLAKVALRPGAGDFVNGILRKLVSLKE 200 >gi|224476326|ref|YP_002633932.1| putative NusB_Sun RNA binding protein [Staphylococcus carnosus subsp. carnosus TM300] gi|222420933|emb|CAL27747.1| putative NusB_Sun RNA binding protein [Staphylococcus carnosus subsp. carnosus TM300] Length = 435 Score = 73.6 bits (180), Expect = 8e-12, Method: Composition-based stats. Identities = 25/138 (18%), Positives = 48/138 (34%), Gaps = 16/138 (11%) Query: 20 RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79 R A + L E I + + Y E+ + D +++G + R Sbjct: 5 RALAFETL-----------EAIFQDKAYSNLKLNEVLKANELSRADKNLLTELVYGTIKR 53 Query: 80 KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139 K ++ + + +R+ + +L + + VP II+E V IA Sbjct: 54 KITLEYYLKPFVQ-----TRIKGWMRHLLWMSIYQYQYLDKVPDHAIINEAVEIAKVRGG 108 Query: 140 GDEPKFINAVLDKVSRKE 157 K +N +L + R Sbjct: 109 LHNSKVVNGILRNMMRSN 126 >gi|16078637|ref|NP_389456.1| RNA-binding Sun protein [Bacillus subtilis subsp. subtilis str. 168] gi|221309449|ref|ZP_03591296.1| hypothetical protein Bsubs1_08691 [Bacillus subtilis subsp. subtilis str. 168] gi|221313774|ref|ZP_03595579.1| hypothetical protein BsubsN3_08627 [Bacillus subtilis subsp. subtilis str. NCIB 3610] gi|221318698|ref|ZP_03599992.1| hypothetical protein BsubsJ_08561 [Bacillus subtilis subsp. subtilis str. JH642] gi|221322969|ref|ZP_03604263.1| hypothetical protein BsubsS_08667 [Bacillus subtilis subsp. subtilis str. SMY] gi|3915867|sp|P94464|RSMB_BACSU RecName: Full=Ribosomal RNA small subunit methyltransferase B; AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase rsmB gi|2337803|emb|CAA74264.1| putative Fmu protein [Bacillus subtilis subsp. subtilis str. 168] gi|2633946|emb|CAB13447.1| RNA-binding Sun protein; 16S rRNA m5C967 methyltransferase, S-adenosyl-L-methionine-dependent [Bacillus subtilis subsp. subtilis str. 168] Length = 447 Score = 73.6 bits (180), Expect = 8e-12, Method: Composition-based stats. Identities = 21/142 (14%), Positives = 52/142 (36%), Gaps = 14/142 (9%) Query: 15 RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74 ++ R A++AL +++ + ++ +D + +++ Sbjct: 2 KKTSVRDIALEALIKLEQNQAYSNLLLKSVIKSNELSDQ-----------NRGLLTELVY 50 Query: 75 GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134 G + K +D ++ + + + +LR + ++ +P I E V IA Sbjct: 51 GTLQNKIALDYMLKPFINKPQKVK---PWVIQLLRLSLYQMEYLEKIPDRAAIHEAVEIA 107 Query: 135 HDFFYGDEPKFINAVLDKVSRK 156 + F+N VL + R+ Sbjct: 108 KIRGHKGIASFVNGVLRSIQRE 129 >gi|315282824|ref|ZP_07871146.1| ribosomal RNA small subunit methyltransferase B [Listeria marthii FSL S4-120] gi|313613532|gb|EFR87354.1| ribosomal RNA small subunit methyltransferase B [Listeria marthii FSL S4-120] Length = 400 Score = 73.6 bits (180), Expect = 8e-12, Method: Composition-based stats. Identities = 25/91 (27%), Positives = 40/91 (43%), Gaps = 11/91 (12%) Query: 69 FRVIIHGVMDRKQHIDLLISSCLTE---KWSFSRLDMILCSILRAGVLELIECHSVPVEV 125 +++G RK +D ++ L + W + ++LR V +L VP Sbjct: 2 LTELVYGTTQRKITLDYYLAPFLNKEPDNW--------VKNLLRMSVYQLTFLDKVPEHA 53 Query: 126 IISEYVCIAHDFFYGDEPKFINAVLDKVSRK 156 I++E IA D + KF+N VL V RK Sbjct: 54 ILNEAGDIAKDLGHQGVTKFVNGVLRNVIRK 84 >gi|110800441|ref|YP_696427.1| ribosomal RNA small subunit methyltransferase B [Clostridium perfringens ATCC 13124] gi|110675088|gb|ABG84075.1| ribosomal RNA small subunit methyltransferase B [Clostridium perfringens ATCC 13124] Length = 442 Score = 73.6 bits (180), Expect = 8e-12, Method: Composition-based stats. Identities = 26/123 (21%), Positives = 57/123 (46%), Gaps = 7/123 (5%) Query: 39 EIISEYETYRFCADTELDVESVYLHVDLE---WFRVIIHGVMDRKQHIDLLISSCLTEKW 95 EI+ ++ E++ + +D + +++G + K+ ID+++SS + Sbjct: 9 EILDNVLLNGAYSNIEINKQFASNDIDPKDKGLITEVVYGTIKYKKMIDIILSSFVA--- 65 Query: 96 SFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSR 155 ++D + +ILR+ + ++ VP I++E V + + + KF+N VL R Sbjct: 66 DIGKIDESVVNILRSAIYQMKFLDRVPPYAIVNEAVNLTKE-TEPNLAKFVNGVLRNYLR 124 Query: 156 KEE 158 E Sbjct: 125 NEN 127 >gi|320093626|ref|ZP_08025510.1| Fmu (Sun) domain protein [Actinomyces sp. oral taxon 178 str. F0338] gi|319979414|gb|EFW10892.1| Fmu (Sun) domain protein [Actinomyces sp. oral taxon 178 str. F0338] Length = 514 Score = 73.6 bits (180), Expect = 9e-12, Method: Composition-based stats. Identities = 29/144 (20%), Positives = 59/144 (40%), Gaps = 11/144 (7%) Query: 15 RRGIA-RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVII 73 RR A R A + L ++ G ++ + + E + D + ++ Sbjct: 37 RRADAPRRVAFEVLSEVTSSGAFANIVLPKALRR-------IRREEPFDDRDAAFTSELV 89 Query: 74 HGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCI 133 HG + + +D ++ + LD + +LR G +L++ VP +S V + Sbjct: 90 HGTLRARGRLDWALARHVDR--PLGDLDPRVLDLLRMGAHQLLDMR-VPDHAAVSATVDV 146 Query: 134 AHDFFYGDEPKFINAVLDKVSRKE 157 A + + +NAVL ++R+E Sbjct: 147 AREHLTDGPVRMVNAVLRALAREE 170 >gi|328466174|gb|EGF37331.1| 16S rRNA methyltransferase B [Listeria monocytogenes 1816] Length = 399 Score = 73.6 bits (180), Expect = 9e-12, Method: Composition-based stats. Identities = 25/89 (28%), Positives = 40/89 (44%), Gaps = 11/89 (12%) Query: 71 VIIHGVMDRKQHIDLLISSCLTE---KWSFSRLDMILCSILRAGVLELIECHSVPVEVII 127 +++G RK +D ++ L + W + ++LR V +L VP I+ Sbjct: 3 ELVYGTTQRKITLDYYLAPFLNKEPDNW--------VKNLLRMSVYQLTFLDKVPEHAIL 54 Query: 128 SEYVCIAHDFFYGDEPKFINAVLDKVSRK 156 +E IA D + KF+N VL V RK Sbjct: 55 NEAGDIAKDLGHQGVTKFVNGVLRNVIRK 83 >gi|331269683|ref|YP_004396175.1| ribosomal RNA small subunit methyltransferase B [Clostridium botulinum BKT015925] gi|329126233|gb|AEB76178.1| ribosomal RNA small subunit methyltransferase B [Clostridium botulinum BKT015925] Length = 443 Score = 73.6 bits (180), Expect = 9e-12, Method: Composition-based stats. Identities = 22/96 (22%), Positives = 41/96 (42%), Gaps = 2/96 (2%) Query: 63 HVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVP 122 D I++G + K ID ++++ L + +D + +ILR + ++ +P Sbjct: 37 DKDKGLITEIVYGTIKYKYTIDTILNAYLKKG--TKSVDSYILNILRTTIYQIKYLDKIP 94 Query: 123 VEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEE 158 ++E V IA E K +N VL R + Sbjct: 95 NFAAVNEAVNIAKKHKSIGESKLVNGVLRNYLRNLD 130 >gi|289551003|ref|YP_003471907.1| Ribosomal RNA small subunit methyltransferase B [Staphylococcus lugdunensis HKU09-01] gi|289180535|gb|ADC87780.1| Ribosomal RNA small subunit methyltransferase B [Staphylococcus lugdunensis HKU09-01] Length = 435 Score = 73.6 bits (180), Expect = 9e-12, Method: Composition-based stats. Identities = 24/126 (19%), Positives = 48/126 (38%), Gaps = 12/126 (9%) Query: 35 CSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLT-- 92 S I++E Y ++ VD + +++G + RK +D + + Sbjct: 11 DSIHAILNE-GAYSNLEINDVLSSQDLSAVDKGLYTELVYGTIKRKFTLDYYLRPFVQTK 69 Query: 93 -EKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLD 151 + W + +L + + + VP II+E V IA +NA+L Sbjct: 70 IKGW--------VRQLLWMSIYQYVYLDKVPNHAIINEAVEIAKHRGGPHNGNIVNAILR 121 Query: 152 KVSRKE 157 ++ R + Sbjct: 122 QIMRSD 127 >gi|293374996|ref|ZP_06621291.1| ribosomal RNA small subunit methyltransferase B [Turicibacter sanguinis PC909] gi|325843368|ref|ZP_08167951.1| ribosomal RNA small subunit methyltransferase B [Turicibacter sp. HGF1] gi|292646406|gb|EFF64421.1| ribosomal RNA small subunit methyltransferase B [Turicibacter sanguinis PC909] gi|325489397|gb|EGC91770.1| ribosomal RNA small subunit methyltransferase B [Turicibacter sp. HGF1] Length = 444 Score = 73.6 bits (180), Expect = 9e-12, Method: Composition-based stats. Identities = 28/141 (19%), Positives = 54/141 (38%), Gaps = 22/141 (15%) Query: 19 ARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMD 78 AR A+Q L I I G + + E +S D + +++G + Sbjct: 4 ARELALQTLTDILINGAYSNHAL-----------NEQIEKSDLTIQDKNFMTELVYGTLQ 52 Query: 79 RKQHIDLLISSCL---TEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135 +Q ++ + + W + +++ + +++ SVP ISE V IA Sbjct: 53 HQQLLNFYATPFFNGKVKGW--------IRILIQMTLYQILYLDSVPEHAAISEAVNIAK 104 Query: 136 DFFYGDEPKFINAVLDKVSRK 156 K +NA+L ++ R Sbjct: 105 KRGGQFNGKLVNAILREMMRN 125 >gi|149182346|ref|ZP_01860824.1| sun protein [Bacillus sp. SG-1] gi|148849965|gb|EDL64137.1| sun protein [Bacillus sp. SG-1] Length = 445 Score = 73.6 bits (180), Expect = 9e-12, Method: Composition-based stats. Identities = 24/145 (16%), Positives = 54/145 (37%), Gaps = 16/145 (11%) Query: 12 LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71 +S + R AA+ L E + + ++Y + D Sbjct: 1 MSKGKKTVREAALDVL-----------ESVEKNQSYSNLLLNHAIEKYGIKGPDTGLLTE 49 Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131 + +G + R+ +D ++ + +K ++ + +LR + ++I +P ++ E V Sbjct: 50 LTYGTIQRRMTLDFYLAPFINKK-----IESWVRQLLRLSLYQMIYLDKIPDRAVLFEAV 104 Query: 132 CIAHDFFYGDEPKFINAVLDKVSRK 156 I + IN +L + RK Sbjct: 105 EIGKRRGHKGIASMINGILRSIQRK 129 >gi|119487592|ref|ZP_01621202.1| Fmu, rRNA SAM-dependent methyltransferase [Lyngbya sp. PCC 8106] gi|119455761|gb|EAW36897.1| Fmu, rRNA SAM-dependent methyltransferase [Lyngbya sp. PCC 8106] Length = 450 Score = 73.6 bits (180), Expect = 9e-12, Method: Composition-based stats. Identities = 25/139 (17%), Positives = 50/139 (35%), Gaps = 13/139 (9%) Query: 20 RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79 R A L +++ G + E ++ V+ +++G + R Sbjct: 6 RQLAFIILREVERRGVYADIALDENLR-----------KADLSAVNRRLTTELVYGCVRR 54 Query: 80 KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139 ++ +D LI +K L IL G +L +P ++ V +A Sbjct: 55 RRSLDALIDQFAQKKSHQQ--PPDLRIILHLGFYQLYYLSQIPASAAVNTSVELAKTNGL 112 Query: 140 GDEPKFINAVLDKVSRKEE 158 F+N +L + R++E Sbjct: 113 SGLSGFVNGILREYLRQQE 131 >gi|317121758|ref|YP_004101761.1| sun protein [Thermaerobacter marianensis DSM 12885] gi|315591738|gb|ADU51034.1| sun protein [Thermaerobacter marianensis DSM 12885] Length = 511 Score = 73.6 bits (180), Expect = 1e-11, Method: Composition-based stats. Identities = 21/97 (21%), Positives = 38/97 (39%), Gaps = 2/97 (2%) Query: 59 SVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIEC 118 + + + +GV R+ +D +S + +RLD + + LR G +L Sbjct: 93 AALPARERALATELAYGVARRQGTLDWALSRFSRK--PPARLDPPVRAALRLGAYQLWYL 150 Query: 119 HSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSR 155 +P + E V + F+NAVL +R Sbjct: 151 DRIPAHAAVDESVNLVRRHGPAYAAGFVNAVLRAAAR 187 >gi|163815235|ref|ZP_02206612.1| hypothetical protein COPEUT_01395 [Coprococcus eutactus ATCC 27759] gi|158449430|gb|EDP26425.1| hypothetical protein COPEUT_01395 [Coprococcus eutactus ATCC 27759] Length = 452 Score = 73.6 bits (180), Expect = 1e-11, Method: Composition-based stats. Identities = 23/120 (19%), Positives = 49/120 (40%), Gaps = 2/120 (1%) Query: 39 EIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFS 98 +I + T L D + ++ GV +++ +D +++ K + Sbjct: 15 DIEKNHTFSNTALGTALRANQFMSKQDRAYITRMVEGVTEKRMRLDYIVNQFSKTK--IN 72 Query: 99 RLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEE 158 + ++ +LR G E+ SV + V +A D +G F+N VL ++R ++ Sbjct: 73 KCKPLIRCVLRMGTYEIFYMDSVQDHTACNLCVKLAADHGFGSLRGFVNGVLRNIARNKD 132 >gi|210617211|ref|ZP_03291455.1| hypothetical protein CLONEX_03677 [Clostridium nexile DSM 1787] gi|210149412|gb|EEA80421.1| hypothetical protein CLONEX_03677 [Clostridium nexile DSM 1787] Length = 177 Score = 73.2 bits (179), Expect = 1e-11, Method: Composition-based stats. Identities = 22/120 (18%), Positives = 50/120 (41%), Gaps = 2/120 (1%) Query: 39 EIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFS 98 E+ + E L+ + + + G ++R +D +I+ K + Sbjct: 17 EVTRDGEHSHIALRNVLNKYQYLDKKERAFITRVTEGTLERMIELDYIINQF--SKVKVN 74 Query: 99 RLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEE 158 ++ ++ +I+R+ V ++ SVP +E V +A + + F+N +L + R E Sbjct: 75 KMKPVIRNIIRSAVYQMKYMDSVPNSAACNEAVKLAVKKGFVNLKGFVNGLLRNIDRNLE 134 >gi|242038659|ref|XP_002466724.1| hypothetical protein SORBIDRAFT_01g012890 [Sorghum bicolor] gi|241920578|gb|EER93722.1| hypothetical protein SORBIDRAFT_01g012890 [Sorghum bicolor] Length = 284 Score = 73.2 bits (179), Expect = 1e-11, Method: Composition-based stats. Identities = 30/138 (21%), Positives = 52/138 (37%), Gaps = 19/138 (13%) Query: 34 GCSTTEIISEYETYRFCADTELDVES-----------VYLHVDLEWFRVIIHGVM----D 78 G E+ +E E + + E D + VY + L R ++ V Sbjct: 136 GGVPLEVGTEEEAEKLTSQNEKDSANEEDVLSAPPKLVYNNFVLRLSRELLVAVASGWDK 195 Query: 79 RKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFF 138 ID +I ++ +R+ + IL + E+ P +V+I+E V +A F Sbjct: 196 HVDIIDKIIPQAWKDE-PVARI--LELCILHIAMAEMT-SKGTPHKVVINEAVDLAKRFC 251 Query: 139 YGDEPKFINAVLDKVSRK 156 G P+ IN L + Sbjct: 252 DGGAPRVINGCLRTFVKD 269 >gi|18310723|ref|NP_562657.1| RNA-binding Sun protein [Clostridium perfringens str. 13] gi|18145404|dbj|BAB81447.1| probable RNA-binding Sun protein [Clostridium perfringens str. 13] Length = 442 Score = 73.2 bits (179), Expect = 1e-11, Method: Composition-based stats. Identities = 27/123 (21%), Positives = 57/123 (46%), Gaps = 7/123 (5%) Query: 39 EIISEYETYRFCADTELDVESVYLHVDLE---WFRVIIHGVMDRKQHIDLLISSCLTEKW 95 EI+ ++ E++ + +D + +++G + K+ ID+++SS + Sbjct: 9 EILDNVLLNGAYSNIEINKQFASNDIDPKDKGLITEVVYGTIKYKKMIDIILSSFVA--- 65 Query: 96 SFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSR 155 ++D + +ILR+ + ++ VP I++E V + + + KFIN VL R Sbjct: 66 DIGKIDESVVNILRSAIYQMKFLDRVPPYAIVNEAVNLTKE-TEPNLAKFINGVLRNYLR 124 Query: 156 KEE 158 E Sbjct: 125 NEN 127 >gi|254431134|ref|ZP_05044837.1| transcription antitermination protein NusB [Cyanobium sp. PCC 7001] gi|197625587|gb|EDY38146.1| transcription antitermination protein NusB [Cyanobium sp. PCC 7001] Length = 211 Score = 73.2 bits (179), Expect = 1e-11, Method: Composition-based stats. Identities = 21/74 (28%), Positives = 36/74 (48%), Gaps = 2/74 (2%) Query: 79 RKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFF 138 +++ ID + + E W +RL I ILR ++L + H P V +E V +A+ + Sbjct: 132 QREAIDRRLD-AVMEGWRLTRLPRIDRDILRLAAVDLADFH-TPAPVACNEAVDLANRYS 189 Query: 139 YGDEPKFINAVLDK 152 + IN VL + Sbjct: 190 DERGRRMINGVLRR 203 >gi|295105557|emb|CBL03101.1| ribosomal RNA small subunit methyltransferase RsmB [Faecalibacterium prausnitzii SL3/3] Length = 443 Score = 73.2 bits (179), Expect = 1e-11, Method: Composition-based stats. Identities = 22/88 (25%), Positives = 40/88 (45%), Gaps = 3/88 (3%) Query: 65 DLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVE 124 D + I + V++ + +D ++ L + ++LD + ILRA + + VPV Sbjct: 39 DKAFASAIFYTVLEHRGTLDYILEQFLPKG--LAKLDAPVREILRAALAQARYMQ-VPVS 95 Query: 125 VIISEYVCIAHDFFYGDEPKFINAVLDK 152 ++E V + F +NAVL K Sbjct: 96 AAVNEAVKLTRTFKKSSASGLVNAVLRK 123 >gi|171920577|ref|ZP_02931840.1| transcription antitermination factor NusB [Ureaplasma urealyticum serovar 13 str. ATCC 33698] gi|185179037|ref|ZP_02964782.1| transcription antitermination factor NusB [Ureaplasma urealyticum serovar 5 str. ATCC 27817] gi|188024190|ref|ZP_02996905.1| transcription antitermination factor NusB [Ureaplasma urealyticum serovar 7 str. ATCC 27819] gi|188518637|ref|ZP_03004078.1| transcription antitermination factor NusB [Ureaplasma urealyticum serovar 11 str. ATCC 33695] gi|188524479|ref|ZP_03004486.1| transcription antitermination factor NusB [Ureaplasma urealyticum serovar 12 str. ATCC 33696] gi|195867654|ref|ZP_03079656.1| transcription antitermination factor NusB [Ureaplasma urealyticum serovar 9 str. ATCC 33175] gi|198273709|ref|ZP_03206244.1| transcription antitermination factor NusB [Ureaplasma urealyticum serovar 4 str. ATCC 27816] gi|209554511|ref|YP_002284699.1| transcription antitermination factor NusB [Ureaplasma urealyticum serovar 10 str. ATCC 33699] gi|225550715|ref|ZP_03771664.1| transcription antitermination factor NusB [Ureaplasma urealyticum serovar 2 str. ATCC 27814] gi|225551022|ref|ZP_03771968.1| transcription antitermination factor NusB [Ureaplasma urealyticum serovar 8 str. ATCC 27618] gi|171903281|gb|EDT49570.1| transcription antitermination factor NusB [Ureaplasma urealyticum serovar 13 str. ATCC 33698] gi|184209018|gb|EDU06061.1| transcription antitermination factor NusB [Ureaplasma urealyticum serovar 5 str. ATCC 27817] gi|188018832|gb|EDU56872.1| transcription antitermination factor NusB [Ureaplasma urealyticum serovar 7 str. ATCC 27819] gi|188997767|gb|EDU66864.1| transcription antitermination factor NusB [Ureaplasma urealyticum serovar 11 str. ATCC 33695] gi|195659568|gb|EDX52948.1| transcription antitermination factor NusB [Ureaplasma urealyticum serovar 12 str. ATCC 33696] gi|195660711|gb|EDX53966.1| transcription antitermination factor NusB [Ureaplasma urealyticum serovar 9 str. ATCC 33175] gi|198249737|gb|EDY74518.1| transcription antitermination factor NusB [Ureaplasma urealyticum serovar 4 str. ATCC 27816] gi|209542012|gb|ACI60241.1| transcription antitermination factor NusB [Ureaplasma urealyticum serovar 10 str. ATCC 33699] gi|225378837|gb|EEH01202.1| transcription antitermination factor NusB [Ureaplasma urealyticum serovar 8 str. ATCC 27618] gi|225379869|gb|EEH02231.1| transcription antitermination factor NusB [Ureaplasma urealyticum serovar 2 str. ATCC 27814] Length = 127 Score = 73.2 bits (179), Expect = 1e-11, Method: Composition-based stats. Identities = 30/134 (22%), Positives = 60/134 (44%), Gaps = 16/134 (11%) Query: 20 RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79 R+ Q +Y I + T + D ELDV + + E+ ++D Sbjct: 8 RVKLFQFVYHWLITKKNKTIALK-----SALVDFELDVSWLSVS---EY-------ILDN 52 Query: 80 KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139 + + +I + + W+F RL + ++L + E + P ++II + + H++ Sbjct: 53 CEQLIKMIKPFINKDWTFERLSYVEQALLLSAYGEYL-VLKTPKKIIIDQTLITTHNYSN 111 Query: 140 GDEPKFINAVLDKV 153 + KFINA+LD++ Sbjct: 112 DESYKFINAILDQL 125 >gi|110803437|ref|YP_699027.1| sun protein [Clostridium perfringens SM101] gi|110683938|gb|ABG87308.1| ribosomal RNA small subunit methyltransferase B [Clostridium perfringens SM101] Length = 442 Score = 73.2 bits (179), Expect = 1e-11, Method: Composition-based stats. Identities = 25/123 (20%), Positives = 57/123 (46%), Gaps = 7/123 (5%) Query: 39 EIISEYETYRFCADTELDVESVYLHVDLE---WFRVIIHGVMDRKQHIDLLISSCLTEKW 95 EI+ ++ E++ + +D + +++G + K+ ID+++S+ + Sbjct: 9 EILDNVLLNGAYSNIEINKQFASNDIDPKDKGLITEVVYGTIKYKKMIDIILSNFVA--- 65 Query: 96 SFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSR 155 ++D + +ILR+ + ++ VP I++E V + + + KF+N VL R Sbjct: 66 DIGKIDESVVNILRSAIYQMKFLDRVPPYAIVNEAVNLTKE-TEPNLAKFVNGVLRNYLR 124 Query: 156 KEE 158 E Sbjct: 125 NEN 127 >gi|15618897|ref|NP_225183.1| transcription antitermination protein NusB [Chlamydophila pneumoniae CWL029] gi|15836520|ref|NP_301044.1| transcription antitermination protein NusB [Chlamydophila pneumoniae J138] gi|7387979|sp|Q9Z6S0|NUSB_CHLPN RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|4377317|gb|AAD19126.1| CT832 hypothetical protein [Chlamydophila pneumoniae CWL029] gi|8979362|dbj|BAA99196.1| CT832 hypothetical protein [Chlamydophila pneumoniae J138] Length = 160 Score = 73.2 bits (179), Expect = 1e-11, Method: Composition-based stats. Identities = 26/143 (18%), Positives = 60/143 (41%), Gaps = 12/143 (8%) Query: 20 RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79 R +Q LY +D+ + ++ + + + V ++++ Sbjct: 26 REIILQMLYALDMAPSAEDSLVPLLMSQTAVSQKHVLVALNQTKS-----------ILEK 74 Query: 80 KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139 Q +DL+I + L + SF LD++ ++LR + E + ++I+E + + F Y Sbjct: 75 SQELDLIIGNAL-KNKSFDSLDLVEKNVLRLTLFEHFYSPPINKAILIAEAIRLVKKFSY 133 Query: 140 GDEPKFINAVLDKVSRKEEIKRS 162 + FI A+L+ + + + Sbjct: 134 SEACPFIQAILNDIFTDSSLNEN 156 >gi|16752038|ref|NP_445404.1| transcription antitermination protein NusB [Chlamydophila pneumoniae AR39] gi|7189778|gb|AAF38655.1| N utilization substance protein B, putative [Chlamydophila pneumoniae AR39] Length = 163 Score = 73.2 bits (179), Expect = 1e-11, Method: Composition-based stats. Identities = 26/143 (18%), Positives = 60/143 (41%), Gaps = 12/143 (8%) Query: 20 RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79 R +Q LY +D+ + ++ + + + V ++++ Sbjct: 29 REIILQMLYALDMAPSAEDSLVPLLMSQTAVSQKHVLVALNQTKS-----------ILEK 77 Query: 80 KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139 Q +DL+I + L + SF LD++ ++LR + E + ++I+E + + F Y Sbjct: 78 SQELDLIIGNAL-KNKSFDSLDLVEKNVLRLTLFEHFYSPPINKAILIAEAIRLVKKFSY 136 Query: 140 GDEPKFINAVLDKVSRKEEIKRS 162 + FI A+L+ + + + Sbjct: 137 SEACPFIQAILNDIFTDSSLNEN 159 >gi|313632754|gb|EFR99722.1| ribosomal RNA small subunit methyltransferase B [Listeria seeligeri FSL N1-067] Length = 446 Score = 73.2 bits (179), Expect = 1e-11, Method: Composition-based stats. Identities = 29/146 (19%), Positives = 54/146 (36%), Gaps = 22/146 (15%) Query: 14 HRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVII 73 ++ R A++ + I ++Y + + +D ++ Sbjct: 2 KKQKTVREIALELI-----------IKIENNQSYSHLLINDALKKQKLNPLDKGLLTELV 50 Query: 74 HGVMDRKQHIDLLISSCLTE---KWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEY 130 +G RK + ++ L + W + ++LR V +L VP I++E Sbjct: 51 YGTTQRKITLXYYLAPFLNKEPDNW--------VKNLLRMSVYQLTFLDKVPEHAILNEA 102 Query: 131 VCIAHDFFYGDEPKFINAVLDKVSRK 156 IA D + KF+N VL V RK Sbjct: 103 GDIAKDLGHQGVTKFVNGVLRNVIRK 128 >gi|269795116|ref|YP_003314571.1| tRNA/rRNA cytosine-C5-methylase [Sanguibacter keddieii DSM 10542] gi|269097301|gb|ACZ21737.1| tRNA/rRNA cytosine-C5-methylase [Sanguibacter keddieii DSM 10542] Length = 505 Score = 73.2 bits (179), Expect = 1e-11, Method: Composition-based stats. Identities = 36/157 (22%), Positives = 62/157 (39%), Gaps = 17/157 (10%) Query: 4 QDNKKDLKLSHRRG---IARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESV 60 + ++ L S RR ARL A L +++ + Y + Sbjct: 31 EGHRGSLAPSERRKGTDSARLVAFDVL-----------REVADSDAYANLVLPPMLRSRG 79 Query: 61 YLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHS 120 D + + +G + + D +I C+ ++D + +LR G +L+ Sbjct: 80 ISGRDAAFATELAYGTLRLRGRYDAIIGECVDR--PLDKIDAPVLDVLRLGAHQLLGMR- 136 Query: 121 VPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKE 157 VP +SE V +A D +F+NAVL K+SR E Sbjct: 137 VPSHAAVSETVGLARDRVGAGSAQFVNAVLRKISRTE 173 >gi|257068774|ref|YP_003155029.1| tRNA/rRNA cytosine-C5-methylase [Brachybacterium faecium DSM 4810] gi|256559592|gb|ACU85439.1| tRNA/rRNA cytosine-C5-methylase [Brachybacterium faecium DSM 4810] Length = 551 Score = 73.2 bits (179), Expect = 1e-11, Method: Composition-based stats. Identities = 30/150 (20%), Positives = 59/150 (39%), Gaps = 14/150 (9%) Query: 8 KDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLE 67 + + S R +R A++ L ++ E ++Y L D Sbjct: 54 RPAERSRRSTPSRQVALEGL-----------RLVREEDSYANLVLPRLLRSHRVSGRDAA 102 Query: 68 WFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVII 127 + + +G + + +D ++++C+ +D L +LR G +L++ P Sbjct: 103 FTTELFYGSLRAQGRLDAILTACVDR--PLEEVDPALRDVLRLGAYQLLDMSVAPHAAT- 159 Query: 128 SEYVCIAHDFFYGDEPKFINAVLDKVSRKE 157 SE V +A F+NAVL +V K+ Sbjct: 160 SETVALARAEVGAGGASFVNAVLRRVGEKD 189 >gi|196230011|ref|ZP_03128874.1| sun protein [Chthoniobacter flavus Ellin428] gi|196225608|gb|EDY20115.1| sun protein [Chthoniobacter flavus Ellin428] Length = 410 Score = 72.8 bits (178), Expect = 1e-11, Method: Composition-based stats. Identities = 31/150 (20%), Positives = 60/150 (40%), Gaps = 22/150 (14%) Query: 20 RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79 R + V AL + + + EI+ ++ +D +F GV+ Sbjct: 4 RQSCVLALLEWEKGKYFSDEILHTSLE-----------KNPMQPLDRAFFMETFFGVLRN 52 Query: 80 KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139 +D LI L E R+D ++LR G+ ++ + P ++E V + Sbjct: 53 LSRLDFLIGQ-LREG----RIDPQTRAVLRLGLYQIFHMRTAPHA-AVNESVAL-----G 101 Query: 140 GDEPKFINAVLDKVSRKEEIKRSGCVSAIT 169 G +NA+L + R++E S ++A + Sbjct: 102 GRARGLVNAILRRALREKEALESDLLAASS 131 >gi|170077132|ref|YP_001733770.1| ribosomal RNA small subunit methyltransferase B (rRNA (cytosine-C(5)-)-methyltransferase) [Synechococcus sp. PCC 7002] gi|169884801|gb|ACA98514.1| ribosomal RNA small subunit methyltransferase B (rRNA (cytosine-C(5)-)-methyltransferase) [Synechococcus sp. PCC 7002] Length = 447 Score = 72.8 bits (178), Expect = 1e-11, Method: Composition-based stats. Identities = 26/142 (18%), Positives = 53/142 (37%), Gaps = 13/142 (9%) Query: 17 GIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGV 76 AR A AL QI + + T++ + ++ S D +++G Sbjct: 2 SSARQLAFLALRQI-MYHNAYTDVALDRVLHK----------SNLTGSDRALVAELVYGT 50 Query: 77 MDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHD 136 + R++ +D +I + + L +L+ G+ +L +P ++ V IA Sbjct: 51 VRRQKTLDAIIDQLGKK--PIDQQPPDLRVLLQLGLYQLRYLDQIPPSAAVNTSVEIAKT 108 Query: 137 FFYGDEPKFINAVLDKVSRKEE 158 G +N L R+ + Sbjct: 109 NKLGQLAGVVNGCLRGYLRQRD 130 >gi|302550113|ref|ZP_07302455.1| ribosomal RNA small subunit methyltransferase B [Streptomyces viridochromogenes DSM 40736] gi|302467731|gb|EFL30824.1| ribosomal RNA small subunit methyltransferase B [Streptomyces viridochromogenes DSM 40736] Length = 472 Score = 72.8 bits (178), Expect = 1e-11, Method: Composition-based stats. Identities = 31/159 (19%), Positives = 59/159 (37%), Gaps = 14/159 (8%) Query: 1 MTIQDNKKDLKLSHRRGI----ARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELD 56 M+ Q + R R+ A +AL +D ++ D Sbjct: 1 MSDQPRRTRPSGKPYRRPKKDPVRILAFEALRAVDERDAYANLVLPPLLRKAREKD---- 56 Query: 57 VESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELI 116 + D +++G + R+ D +I++C+ +D + +L G +L+ Sbjct: 57 ---DFDARDAALATELVYGTLRRQGTYDAVIATCVDR--PLGEVDPPVLDVLSLGAHQLL 111 Query: 117 ECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSR 155 +P +S V +A KF+NAVL KV++ Sbjct: 112 GTR-IPTHAAVSATVELARVVLGDGRAKFVNAVLRKVAQ 149 >gi|255311673|ref|ZP_05354243.1| transcription antitermination protein NusB [Chlamydia trachomatis 6276] gi|255317974|ref|ZP_05359220.1| transcription antitermination protein NusB [Chlamydia trachomatis 6276s] Length = 168 Score = 72.8 bits (178), Expect = 1e-11, Method: Composition-based stats. Identities = 30/141 (21%), Positives = 57/141 (40%), Gaps = 15/141 (10%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 + R +QALY ++I ++S T E+ + + + Sbjct: 21 KQKLRELVLQALYALEIDPEGEDSLVSLLMT-----------EASVSKKNAAYALMFCRA 69 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHS---VPVEVIISEYVC 132 + + +D L+ + + + +RL +I +ILR + E + VPV V+I+E Sbjct: 70 IRANQPDLDALLDATI-RTTTLARLTIIERNILRMMLFEHQQNQDCCPVPVAVLIAETAR 128 Query: 133 IAHDFFYGDEPKFINAVLDKV 153 + F Y + I AVL + Sbjct: 129 LIKKFSYSEGSSLILAVLGSI 149 >gi|318078496|ref|ZP_07985828.1| RNA-binding Sun protein [Streptomyces sp. SA3_actF] Length = 685 Score = 72.8 bits (178), Expect = 1e-11, Method: Composition-based stats. Identities = 27/146 (18%), Positives = 57/146 (39%), Gaps = 10/146 (6%) Query: 12 LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71 + R+ R+ A AL +D ++ E + + D Sbjct: 16 RAPRKDPVRVLAFDALRAVDERDAYANLVLPALLR-------EAREKGGFDARDAALATE 68 Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131 +++G + + D +I++C+ +D + +L G +L+ +P +S V Sbjct: 69 LVYGTLRGRGTYDAIIAACVDR--PLREVDPPVLDVLSLGAHQLLGTR-IPTHAAVSATV 125 Query: 132 CIAHDFFYGDEPKFINAVLDKVSRKE 157 +A +F+NAVL ++SR + Sbjct: 126 ELARVVLGDGRSRFVNAVLRRISRND 151 >gi|294628319|ref|ZP_06706879.1| conserved hypothetical protein [Streptomyces sp. e14] gi|292831652|gb|EFF90001.1| conserved hypothetical protein [Streptomyces sp. e14] Length = 335 Score = 72.8 bits (178), Expect = 2e-11, Method: Composition-based stats. Identities = 30/156 (19%), Positives = 61/156 (39%), Gaps = 12/156 (7%) Query: 2 TIQDNKKDLKLSHR--RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVES 59 T + ++ K R + R+ A AL +D ++ + + Sbjct: 4 TSRRPRRPAKPYRRPQKDPVRILAFDALRAVDERDAYANLVLPPLLR-------KAREKG 56 Query: 60 VYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECH 119 + D +++G + R+ D +I++C+ +D + +L G +L+ Sbjct: 57 DFDARDAALATELVYGTLRRQGTYDAIIAACVDR--PLREVDPPVLDVLSLGAHQLLGTR 114 Query: 120 SVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSR 155 +P +S V +A KF+NAVL KV++ Sbjct: 115 -IPTHAAVSATVELARVVLGDGRAKFVNAVLRKVAQ 149 >gi|169349816|ref|ZP_02866754.1| hypothetical protein CLOSPI_00554 [Clostridium spiroforme DSM 1552] gi|169293384|gb|EDS75517.1| hypothetical protein CLOSPI_00554 [Clostridium spiroforme DSM 1552] Length = 481 Score = 72.8 bits (178), Expect = 2e-11, Method: Composition-based stats. Identities = 33/147 (22%), Positives = 56/147 (38%), Gaps = 24/147 (16%) Query: 18 IARLAAVQALYQIDIIGCSTTEIISEYETYRFCADT--ELDVESVYLHVDLEWFRVIIHG 75 +AR A++ L + + + + T E S D + I++G Sbjct: 65 MAREVALEIL-------------LKYHNEHSYLNITLNEYLKNSTLSRNDKDLVTRIVYG 111 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135 + +++ + + K SR IL + +LI VP II E V +A Sbjct: 112 TVQNMIYLEYQLEPYIKNKKVKSR----EKMILLMSLYQLIFLDKVPEYAIIDEAVKLAK 167 Query: 136 D--FFYGDEPKFINAVLDKVSRKEEIK 160 F+ G KF+NA+L R + K Sbjct: 168 KKNFYAG---KFVNAILRNYLRNGKRK 191 >gi|297583987|ref|YP_003699767.1| sun protein [Bacillus selenitireducens MLS10] gi|297142444|gb|ADH99201.1| sun protein [Bacillus selenitireducens MLS10] Length = 457 Score = 72.8 bits (178), Expect = 2e-11, Method: Composition-based stats. Identities = 25/116 (21%), Positives = 53/116 (45%), Gaps = 2/116 (1%) Query: 41 ISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRL 100 IS+ + Y E ++ VD+ I++G + ++ +D +S+ ++ ++L Sbjct: 21 ISKDQAYSHLLLNETVMKKKIKEVDVALLTEIVYGTLQHQRRLDYYVSAFSKKE--LNKL 78 Query: 101 DMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRK 156 + + +LR V ++ VP I++E V IA + +N +L V R+ Sbjct: 79 ENWVLILLRLSVYQMHFLDRVPDHAILNEAVRIASKRGHKGIAGMVNGILRSVQRE 134 >gi|329120994|ref|ZP_08249625.1| RNA methyltransferase Sun [Dialister micraerophilus DSM 19965] gi|327471156|gb|EGF16610.1| RNA methyltransferase Sun [Dialister micraerophilus DSM 19965] Length = 448 Score = 72.8 bits (178), Expect = 2e-11, Method: Composition-based stats. Identities = 26/138 (18%), Positives = 56/138 (40%), Gaps = 13/138 (9%) Query: 20 RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79 RL A Q +Y+ I + Y + ++ L D +++G+ + Sbjct: 12 RLLAYQCIYE-----------IFYRDAYANLSLQKIFKSHKLLSRDKALITELVYGICRK 60 Query: 80 KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139 ++ I L+ S +++ + +L G+ +LI +P ++E V + + Sbjct: 61 CNYL-QYIVEKLS-NRSINKIHKSVRILLYLGLYQLIYLDKIPESAAVNETVKLTKKITH 118 Query: 140 GDEPKFINAVLDKVSRKE 157 +F+NA+L RK+ Sbjct: 119 QGNVRFVNAILRNFLRKK 136 >gi|13357860|ref|NP_078134.1| transcription termination factor [Ureaplasma parvum serovar 3 str. ATCC 700970] gi|170761973|ref|YP_001752382.1| transcription antitermination factor NusB [Ureaplasma parvum serovar 3 str. ATCC 27815] gi|171920328|ref|ZP_02691332.2| transcription antitermination factor NusB [Ureaplasma parvum serovar 1 str. ATCC 27813] gi|183508752|ref|ZP_02690168.2| transcription antitermination factor NusB [Ureaplasma parvum serovar 14 str. ATCC 33697] gi|186701937|ref|ZP_02554155.2| transcription antitermination factor NusB [Ureaplasma parvum serovar 6 str. ATCC 27818] gi|11357059|pir||A82909 transcription termination factor UU300 [imported] - Ureaplasma urealyticum gi|6899275|gb|AAF30709.1|AE002127_7 transcription termination factor [Ureaplasma parvum serovar 3 str. ATCC 700970] gi|168827550|gb|ACA32812.1| transcription antitermination factor NusB [Ureaplasma parvum serovar 3 str. ATCC 27815] gi|171902748|gb|EDT49037.1| transcription antitermination factor NusB [Ureaplasma parvum serovar 1 str. ATCC 27813] gi|182675685|gb|EDT87590.1| transcription antitermination factor NusB [Ureaplasma parvum serovar 14 str. ATCC 33697] gi|186700685|gb|EDU18967.1| transcription antitermination factor NusB [Ureaplasma parvum serovar 6 str. ATCC 27818] Length = 127 Score = 72.8 bits (178), Expect = 2e-11, Method: Composition-based stats. Identities = 28/134 (20%), Positives = 63/134 (47%), Gaps = 16/134 (11%) Query: 20 RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79 R+ Q +Y I + + CA + D++ +++V E+ ++D Sbjct: 8 RVKLFQFIYHWLITKKNKPIALK-------CALVDFDLDLNWINV-GEY-------ILDN 52 Query: 80 KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139 + + +I +++ W+F RL + ++L + E + P ++II + + H++ Sbjct: 53 YEQLTKMIKPLISKDWTFERLSYVEQALLLSAYGEYL-VLKTPKKIIIDQTLITTHNYSN 111 Query: 140 GDEPKFINAVLDKV 153 + KFINA+LD++ Sbjct: 112 NESYKFINAILDQL 125 >gi|1772501|emb|CAA71351.1| hypothetical protein [Bacillus subtilis subsp. subtilis str. 168] Length = 240 Score = 72.4 bits (177), Expect = 2e-11, Method: Composition-based stats. Identities = 21/142 (14%), Positives = 52/142 (36%), Gaps = 14/142 (9%) Query: 15 RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74 ++ R A++AL +++ + ++ +D + +++ Sbjct: 2 KKTSVRDIALEALIKLEQNQAYSNLLLKSVIKSNELSDQ-----------NRGLLTELVY 50 Query: 75 GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134 G + K +D ++ + + + +LR + ++ +P I E V IA Sbjct: 51 GTLQNKIALDYMLKPFINKPQKVK---PWVIQLLRLSLYQMEYLEKIPDRAAIHEAVEIA 107 Query: 135 HDFFYGDEPKFINAVLDKVSRK 156 + F+N VL + R+ Sbjct: 108 KIRGHKGIASFVNGVLRSIQRE 129 >gi|313891936|ref|ZP_07825537.1| ribosomal RNA small subunit methyltransferase B [Dialister microaerophilus UPII 345-E] gi|313119579|gb|EFR42770.1| ribosomal RNA small subunit methyltransferase B [Dialister microaerophilus UPII 345-E] Length = 448 Score = 72.4 bits (177), Expect = 2e-11, Method: Composition-based stats. Identities = 26/138 (18%), Positives = 56/138 (40%), Gaps = 13/138 (9%) Query: 20 RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79 RL A Q +Y+ I + Y + ++ L D +++G+ + Sbjct: 12 RLLAYQCIYE-----------IFYRDAYANLSLQKIFKSHKLLSRDKALITELVYGICRK 60 Query: 80 KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139 ++ I L+ S +++ + +L G+ +LI +P ++E V + + Sbjct: 61 CNYL-QYIVEKLS-NRSINKIHKSVRILLYLGLYQLIYLDKIPESAAVNETVKLTKKITH 118 Query: 140 GDEPKFINAVLDKVSRKE 157 +F+NA+L RK+ Sbjct: 119 QGNVRFVNAILRNFLRKK 136 >gi|320011939|gb|ADW06789.1| Fmu (Sun) domain protein [Streptomyces flavogriseus ATCC 33331] Length = 477 Score = 72.4 bits (177), Expect = 2e-11, Method: Composition-based stats. Identities = 31/156 (19%), Positives = 60/156 (38%), Gaps = 12/156 (7%) Query: 1 MTIQDNKKDLKLSHR--RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVE 58 M Q ++ K R + R A + L +D ++ + + Sbjct: 1 MNDQQRRRPAKPHRRPKKDPVRFLAFEVLRAVDERDAYANLVLPPLL-------KKARAK 53 Query: 59 SVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIEC 118 + D +++G + R+ D ++++C+ +D + +L GV +L+ Sbjct: 54 GDFEGRDAALATELVYGTLRRQGTYDAIVAACIDR--PLREVDPPVLDVLNMGVHQLLGT 111 Query: 119 HSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVS 154 +P +S V +A KF+NAVL KVS Sbjct: 112 R-IPTHAAVSASVELARVVLGEGRAKFVNAVLRKVS 146 >gi|257055599|ref|YP_003133431.1| tRNA/rRNA cytosine-C5-methylase [Saccharomonospora viridis DSM 43017] gi|256585471|gb|ACU96604.1| tRNA/rRNA cytosine-C5-methylase [Saccharomonospora viridis DSM 43017] Length = 484 Score = 72.4 bits (177), Expect = 2e-11, Method: Composition-based stats. Identities = 33/154 (21%), Positives = 59/154 (38%), Gaps = 14/154 (9%) Query: 5 DNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHV 64 K+ + R AR AA AL ++E + Y EL + Sbjct: 25 PRKQGPRRPPTRDPARRAAFDAL-----------RAVTERDAYANLILPELLRQRRITGR 73 Query: 65 DLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVE 124 D + +G +D +++ C+ K +D ++ LR G +L+ +P Sbjct: 74 DAALATELTYGTARATGLLDAIVARCVDRK--LDTVDPVVRDALRLGAYQLL-RTRIPHH 130 Query: 125 VIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEE 158 ++ V + + F+NAVL +VS K+E Sbjct: 131 AAVASTVDLVREDAGSRVAGFVNAVLRRVSEKDE 164 >gi|73662864|ref|YP_301645.1| tRNA and rRNA cytosine-C5-methylase [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] gi|72495379|dbj|BAE18700.1| putative tRNA and rRNA cytosine-C5-methylase [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] Length = 436 Score = 72.4 bits (177), Expect = 2e-11, Method: Composition-based stats. Identities = 21/126 (16%), Positives = 49/126 (38%), Gaps = 12/126 (9%) Query: 35 CSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLT-- 92 + +II++ + Y ++ + D + +++G + RK +D L+ + Sbjct: 13 ETIQDIIND-KAYSNIIINDVLSNNELNRADKGLYTELVYGTLKRKYTLDYLLKPFVQTK 71 Query: 93 -EKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLD 151 + W + +L + + + +P II+E V IA +N +L Sbjct: 72 LKGW--------VRQLLWMSIYQYVYLDKIPEHAIINEAVEIAKYKGGPHNGNVVNGILR 123 Query: 152 KVSRKE 157 + R + Sbjct: 124 NIMRSD 129 >gi|302561751|ref|ZP_07314093.1| conserved hypothetical protein [Streptomyces griseoflavus Tu4000] gi|302479369|gb|EFL42462.1| conserved hypothetical protein [Streptomyces griseoflavus Tu4000] Length = 334 Score = 72.4 bits (177), Expect = 2e-11, Method: Composition-based stats. Identities = 30/161 (18%), Positives = 63/161 (39%), Gaps = 14/161 (8%) Query: 1 MTIQDNK--KDLKLSHR--RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELD 56 M+ Q + K K R + R+ A +AL +D ++ + Sbjct: 1 MSDQPRRPRKPAKPYRRPKKDPVRILAFEALRAVDERDAYANLVLPPLLR-------KAR 53 Query: 57 VESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELI 116 + D +++G + R+ D ++++C+ +D + +L G +L+ Sbjct: 54 ENGDFEARDAALATELVYGTLRRQGTYDAVVAACVDR--PLREVDPPVLDVLSLGAHQLL 111 Query: 117 ECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKE 157 +P +S V +A KF+NAVL K+++ + Sbjct: 112 GTR-IPTHAAVSATVELARVVLGDGRAKFVNAVLRKIAQDD 151 >gi|329728796|gb|EGG65217.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus aureus subsp. aureus 21193] Length = 435 Score = 72.4 bits (177), Expect = 2e-11, Method: Composition-based stats. Identities = 25/123 (20%), Positives = 49/123 (39%), Gaps = 6/123 (4%) Query: 35 CSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEK 94 + +I++E Y E+ E+ +D F I++G + RK +D + + K Sbjct: 11 DTIQDILNE-GAYSNLRINEVLSENELNAMDKALFTEIVYGTVKRKYTLDFYLKPFVKTK 69 Query: 95 WSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVS 154 + + +L + + + VP II+E V IA + +N L + Sbjct: 70 -----IKAWVRQLLWMSIYQYVYLDKVPNHAIINEAVEIAKERGGYHNGNVVNGFLRTMM 124 Query: 155 RKE 157 R + Sbjct: 125 RSD 127 >gi|326407382|gb|ADZ64453.1| ribosomal RNA small subunit methyltransferase B [Lactococcus lactis subsp. lactis CV56] Length = 424 Score = 72.4 bits (177), Expect = 2e-11, Method: Composition-based stats. Identities = 32/148 (21%), Positives = 53/148 (35%), Gaps = 22/148 (14%) Query: 17 GIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGV 76 AR A+ L + + R D+EL VD + +++GV Sbjct: 3 KNARQTALDVL-----NDIFGNDAYANISLDRNLRDSELST------VDKAFVTALVYGV 51 Query: 77 MDRKQHIDLLISSCLTEK---WSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCI 133 + +K ++ I+ L ++ W+ +L V +++ VP + E V I Sbjct: 52 VSKKDLLEWHITPFLKKEPKPWA--------KMLLLLTVYQILFMDKVPTSAAVDEAVKI 103 Query: 134 AHDFFYGDEPKFINAVLDKVSRKEEIKR 161 A FINAVL R E Sbjct: 104 AKRRDGQATANFINAVLRNFMRSEHRNE 131 >gi|56964082|ref|YP_175813.1| RNA-binding protein Sun [Bacillus clausii KSM-K16] gi|56910325|dbj|BAD64852.1| RNA-binding protein Sun [Bacillus clausii KSM-K16] Length = 447 Score = 72.4 bits (177), Expect = 2e-11, Method: Composition-based stats. Identities = 27/142 (19%), Positives = 53/142 (37%), Gaps = 14/142 (9%) Query: 15 RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74 R R A+ AL + + S + + LD D +++ Sbjct: 2 NRPSVREVALDAL-----LKVEKNQAYSHLLLHSTLTNAGLD------KRDSGLLTELVY 50 Query: 75 GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134 G + RK+ +D ++ L R + +LR V +++ +P ++ E V IA Sbjct: 51 GTIARKRTLDYYLAPFLKSGKK--RALWVD-VLLRLSVYQMVFLDRIPDRAVVHEAVTIA 107 Query: 135 HDFFYGDEPKFINAVLDKVSRK 156 + + +N VL + R+ Sbjct: 108 NKRGHKGISGLVNGVLRSIQRQ 129 >gi|218439986|ref|YP_002378315.1| sun protein [Cyanothece sp. PCC 7424] gi|218172714|gb|ACK71447.1| sun protein [Cyanothece sp. PCC 7424] Length = 452 Score = 72.4 bits (177), Expect = 2e-11, Method: Composition-based stats. Identities = 30/162 (18%), Positives = 61/162 (37%), Gaps = 24/162 (14%) Query: 1 MTIQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESV 60 MT ++ R A+ L I + E Y A + + Sbjct: 1 MTFKEKNP-----------RQLALIIL-----------RDIYQKEAYTDLALDQGIKRAD 38 Query: 61 YLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHS 120 ++D +++G++ R++ +D +IS T+K ++ L IL G+ +L Sbjct: 39 LGNLDRGLVTELVYGIVRRQRTLDEIISQLGTKK--ANQQPPDLRLILHIGLYQLRYLDQ 96 Query: 121 VPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRS 162 +P ++ V +A G +N +L + R +E + Sbjct: 97 IPPSAAVNTSVELAKKNKLGKLSGVVNGILRQYDRIKEQGKD 138 >gi|15673871|ref|NP_268046.1| rRNA methylase [Lactococcus lactis subsp. lactis Il1403] gi|12724923|gb|AAK05987.1|AE006418_7 rRNA methylase [Lactococcus lactis subsp. lactis Il1403] Length = 424 Score = 72.4 bits (177), Expect = 2e-11, Method: Composition-based stats. Identities = 32/148 (21%), Positives = 53/148 (35%), Gaps = 22/148 (14%) Query: 17 GIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGV 76 AR A+ L + + R D+EL VD + +++GV Sbjct: 3 KNARQTALDVL-----NDIFGNDAYANISLDRNLRDSELST------VDKAFVTALVYGV 51 Query: 77 MDRKQHIDLLISSCLTEK---WSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCI 133 + +K ++ I+ L ++ W+ +L V +++ VP + E V I Sbjct: 52 VSKKDLLEWHITPFLKKEPKPWA--------KMLLLLTVYQILFMDKVPTSAAVDEAVKI 103 Query: 134 AHDFFYGDEPKFINAVLDKVSRKEEIKR 161 A FINAVL R E Sbjct: 104 AKRRDGQATANFINAVLRNFMRSEHRNE 131 >gi|219669868|ref|YP_002460303.1| sun protein [Desulfitobacterium hafniense DCB-2] gi|219540128|gb|ACL21867.1| sun protein [Desulfitobacterium hafniense DCB-2] Length = 453 Score = 72.4 bits (177), Expect = 2e-11, Method: Composition-based stats. Identities = 28/136 (20%), Positives = 50/136 (36%), Gaps = 15/136 (11%) Query: 18 IARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVM 77 +R AVQ L I E L S + ++++G + Sbjct: 5 TSRALAVQIL----------RRIEEEKAYANLVMQKALHDLSDPRE--RQLATLLVNGTL 52 Query: 78 DRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDF 137 + +D + L + S+L + ILR L+++ +P V I+E V + Sbjct: 53 KHRLTLDYALRRHLRK--PLSQLPHEVRWILRISALQILYLSRIPAAVAINEGVELTKK- 109 Query: 138 FYGDEPKFINAVLDKV 153 G +N+VL +V Sbjct: 110 QQGKYTSLVNSVLRRV 125 >gi|281492501|ref|YP_003354481.1| 16S rRNA m(5)C 967 methyltransferase [Lactococcus lactis subsp. lactis KF147] gi|281376165|gb|ADA65656.1| 16S rRNA m(5)C 967 methyltransferase [Lactococcus lactis subsp. lactis KF147] Length = 424 Score = 72.1 bits (176), Expect = 2e-11, Method: Composition-based stats. Identities = 32/148 (21%), Positives = 53/148 (35%), Gaps = 22/148 (14%) Query: 17 GIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGV 76 AR A+ L + + R D+EL VD + +++GV Sbjct: 3 KNARQTALDVL-----NDIFGNDAYANISLDRNLRDSELST------VDKAFVTALVYGV 51 Query: 77 MDRKQHIDLLISSCLTEK---WSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCI 133 + +K ++ I+ L ++ W+ +L V +++ VP + E V I Sbjct: 52 VSKKDLLEWHITPFLKKEPKPWA--------KMLLLLTVYQILFMDKVPTSAAVDEAVKI 103 Query: 134 AHDFFYGDEPKFINAVLDKVSRKEEIKR 161 A FINAVL R E Sbjct: 104 AKRRDGQATANFINAVLRNFMRSEHRNE 131 >gi|227495439|ref|ZP_03925755.1| 16S rRNA m(5)C 967 methyltransferase [Actinomyces coleocanis DSM 15436] gi|226830986|gb|EEH63369.1| 16S rRNA m(5)C 967 methyltransferase [Actinomyces coleocanis DSM 15436] Length = 487 Score = 72.1 bits (176), Expect = 2e-11, Method: Composition-based stats. Identities = 27/146 (18%), Positives = 58/146 (39%), Gaps = 14/146 (9%) Query: 4 QDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLH 63 +++ + R AR A + L ++D+ ++ + T E+ Sbjct: 15 RNDSRGRSKQARVSKARTVAFETLLKVDVEDAYANIVLPKAIT-----------EANLDS 63 Query: 64 VDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPV 123 D + +++G + +D +I C+ +K + LD + +ILR +++ VP Sbjct: 64 RDASFATELVYGTLRNLARVDWVIEQCMPKK--IADLDPEVRAILRLTAHQILHLR-VPD 120 Query: 124 EVIISEYVCIAHDFFYGDEPKFINAV 149 ++E V + KF+N V Sbjct: 121 HAAVAESVELTKHVAGFGVEKFVNGV 146 >gi|298492855|ref|YP_003723032.1| sun protein ['Nostoc azollae' 0708] gi|298234773|gb|ADI65909.1| sun protein ['Nostoc azollae' 0708] Length = 446 Score = 72.1 bits (176), Expect = 2e-11, Method: Composition-based stats. Identities = 27/139 (19%), Positives = 53/139 (38%), Gaps = 14/139 (10%) Query: 20 RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79 R A AL ++ + ++ + +F D +++G + R Sbjct: 5 RQLAFIAL--KEVHKGAYADVALDRVLQKF----------KLPDNDRRLMTELVYGSVRR 52 Query: 80 KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139 ++ +D LI T+K L +IL G +L +PV ++ V +A + + Sbjct: 53 QRTLDTLIDKLATKKAHQQ--PPELRTILHLGFYQLRYQEKIPVSAAVNTTVELAKENGF 110 Query: 140 GDEPKFINAVLDKVSRKEE 158 F+N +L + R E Sbjct: 111 SSLTGFVNGLLRQYLRLIE 129 >gi|302848840|ref|XP_002955951.1| hypothetical protein VOLCADRAFT_42105 [Volvox carteri f. nagariensis] gi|300258677|gb|EFJ42911.1| hypothetical protein VOLCADRAFT_42105 [Volvox carteri f. nagariensis] Length = 426 Score = 72.1 bits (176), Expect = 2e-11, Method: Composition-based stats. Identities = 23/95 (24%), Positives = 45/95 (47%), Gaps = 4/95 (4%) Query: 65 DLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVE 124 D + ++ GV ++ +D +++ LT++ ++ + +LR GV EL E P Sbjct: 2 DQRLVKELVAGVTRLRRRLDFVVA-NLTQQTPAD-MESGVRQVLRLGVYELTERRLAPY- 58 Query: 125 VIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEI 159 ++E+V +A F+N VL +R+ E Sbjct: 59 -ALNEHVQLAKVVSGPGAGSFVNGVLRSAARQVEA 92 >gi|281412717|ref|YP_003346796.1| sun protein [Thermotoga naphthophila RKU-10] gi|281373820|gb|ADA67382.1| sun protein [Thermotoga naphthophila RKU-10] Length = 431 Score = 72.1 bits (176), Expect = 2e-11, Method: Composition-based stats. Identities = 30/123 (24%), Positives = 59/123 (47%), Gaps = 8/123 (6%) Query: 40 IISEYETYRFCADTELDVESVYLH-VDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFS 98 ++ +YE +F ++D +L D +F+ ++ GV+ +++ +D I+ L +K Sbjct: 12 LLRKYEKEKFILREDVDSVLSFLDDKDRRFFKELVWGVVRKEELLDWYINQLLKKK---- 67 Query: 99 RLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEE 158 + + LR G +L+ +SVP +SE V + + K +NAVL ++ E Sbjct: 68 DIPPAVRVALRMGAYQLLFMNSVPDYAAVSETVKLVK---SENFKKLVNAVLRRLRTVPE 124 Query: 159 IKR 161 K Sbjct: 125 PKE 127 >gi|76789577|ref|YP_328663.1| transcription antitermination protein NusB [Chlamydia trachomatis A/HAR-13] gi|237803264|ref|YP_002888458.1| transcription antitermination protein NusB [Chlamydia trachomatis B/Jali20/OT] gi|237805185|ref|YP_002889339.1| transcription antitermination protein NusB [Chlamydia trachomatis B/TZ1A828/OT] gi|255349237|ref|ZP_05381244.1| transcription antitermination protein NusB [Chlamydia trachomatis 70] gi|255503774|ref|ZP_05382164.1| transcription antitermination protein NusB [Chlamydia trachomatis 70s] gi|255507455|ref|ZP_05383094.1| transcription antitermination protein NusB [Chlamydia trachomatis D(s)2923] gi|119390756|sp|Q3KKK7|NUSB_CHLTA RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|76168107|gb|AAX51115.1| N utilization substance protein B [Chlamydia trachomatis A/HAR-13] gi|231273485|emb|CAX10401.1| Antitermination protein [Chlamydia trachomatis B/TZ1A828/OT] gi|231274498|emb|CAX11294.1| Antitermination protein [Chlamydia trachomatis B/Jali20/OT] gi|289525878|emb|CBJ15360.1| Antitermination protein [Chlamydia trachomatis Sweden2] gi|296435464|gb|ADH17642.1| transcription antitermination protein NusB [Chlamydia trachomatis E/150] gi|296439181|gb|ADH21334.1| transcription antitermination protein NusB [Chlamydia trachomatis E/11023] Length = 168 Score = 72.1 bits (176), Expect = 3e-11, Method: Composition-based stats. Identities = 29/141 (20%), Positives = 57/141 (40%), Gaps = 15/141 (10%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 + R +QALY ++I ++S T E+ + + + Sbjct: 21 KQKLRELVLQALYALEIDPEGEDSLVSLLMT-----------EASVSKKNAAYALMFCRA 69 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHS---VPVEVIISEYVC 132 + + +D L+ + + + +RL +I +ILR + E + VPV ++I+E Sbjct: 70 IRANQPDLDALLDATI-RTTTLARLTIIERNILRMMLFEHQQNQDCCPVPVAILIAETTR 128 Query: 133 IAHDFFYGDEPKFINAVLDKV 153 + F Y + I AVL + Sbjct: 129 LIKKFSYSEGSSLILAVLGSI 149 >gi|212639615|ref|YP_002316135.1| rRNA cytosine-C5-methylase [Anoxybacillus flavithermus WK1] gi|212561095|gb|ACJ34150.1| rRNA cytosine-C5-methylase [Anoxybacillus flavithermus WK1] Length = 446 Score = 72.1 bits (176), Expect = 3e-11, Method: Composition-based stats. Identities = 18/121 (14%), Positives = 44/121 (36%), Gaps = 5/121 (4%) Query: 36 STTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKW 95 I Y + + + D+ +++G + R+ +D + + Sbjct: 10 DVLIDIERKRAYSNLSLHHVIETNELSAQDVALLTELVYGTIQRRDTLDYYLQPFIKGN- 68 Query: 96 SFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSR 155 ++ + +LR + ++I +P ++ E V IA + +N +L V R Sbjct: 69 ----IEPWVRLLLRMSLYQMIYLDRIPDRAVLFEAVEIAKRRGHRGIASLVNGILRSVQR 124 Query: 156 K 156 + Sbjct: 125 Q 125 >gi|313901450|ref|ZP_07834907.1| sun protein [Thermaerobacter subterraneus DSM 13965] gi|313468278|gb|EFR63735.1| sun protein [Thermaerobacter subterraneus DSM 13965] Length = 488 Score = 72.1 bits (176), Expect = 3e-11, Method: Composition-based stats. Identities = 22/99 (22%), Positives = 38/99 (38%), Gaps = 2/99 (2%) Query: 57 VESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELI 116 S + + +GV R+ +D ++ RLD + LR G +L Sbjct: 68 EGSGLPARERALATELAYGVARRQGSLDWALARWARR--PPERLDPPVRVALRLGAYQLW 125 Query: 117 ECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSR 155 +P ++E V + G F+NAVL + +R Sbjct: 126 HLDRIPDHAAVAESVELVRRHGPGYAAGFVNAVLRRAAR 164 >gi|26553613|ref|NP_757547.1| transcription termination factor N-utilization substance protein B [Mycoplasma penetrans HF-2] gi|26453619|dbj|BAC43951.1| transcription termination factor N-utilization substance protein B [Mycoplasma penetrans HF-2] Length = 149 Score = 72.1 bits (176), Expect = 3e-11, Method: Composition-based stats. Identities = 21/77 (27%), Positives = 37/77 (48%), Gaps = 1/77 (1%) Query: 77 MDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHD 136 + KQ+I I L E+W RL+ + SI+ E + ++II + + + Sbjct: 71 IKNKQNIKSRIKPLLKEEWEIDRLNKVDLSIIMEAFCEF-HTLDIDRKIIIDQAIVTSKR 129 Query: 137 FFYGDEPKFINAVLDKV 153 + + KFIN +LDK+ Sbjct: 130 YSENNSYKFINFILDKL 146 >gi|15644260|ref|NP_229312.1| sun protein [Thermotoga maritima MSB8] gi|4982078|gb|AAD36579.1|AE001799_11 sun protein [Thermotoga maritima MSB8] Length = 431 Score = 72.1 bits (176), Expect = 3e-11, Method: Composition-based stats. Identities = 30/123 (24%), Positives = 60/123 (48%), Gaps = 8/123 (6%) Query: 40 IISEYETYRFCADTELDVESVYLH-VDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFS 98 ++ +YE +F + ++D +L D +F+ ++ GV+ +++ +D I+ L +K Sbjct: 12 LLRKYEKEKFISREDVDSVLSFLDDRDRRFFKELVWGVVRKEELLDWYINQLLKKK---- 67 Query: 99 RLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEE 158 + + LR G +L+ +SVP +SE V + + K +NAVL ++ E Sbjct: 68 DIPPAVRVALRMGAYQLLFMNSVPDYAAVSETVKLVK---NENFKKLVNAVLRRLRTVPE 124 Query: 159 IKR 161 K Sbjct: 125 PKE 127 >gi|308190107|ref|YP_003923038.1| transcription termination factor [Mycoplasma fermentans JER] gi|307624849|gb|ADN69154.1| transcription termination factor [Mycoplasma fermentans JER] Length = 139 Score = 72.1 bits (176), Expect = 3e-11, Method: Composition-based stats. Identities = 33/144 (22%), Positives = 58/144 (40%), Gaps = 21/144 (14%) Query: 14 HRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVII 73 R RL + LY+ +++ + D ES + I Sbjct: 2 QNRRQFRLGIINVLYRYELMDQKIN------------VNELFDSESNLSNEQFSHLEKI- 48 Query: 74 HGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCI 133 +S L E WS+ R+ ++ +IL G EL+ S+ ++II+E V I Sbjct: 49 ---AKNYDFYKKAVSQFLKEGWSWERISPLIRAILINGTHELM---SIEPKIIINESVEI 102 Query: 134 AHDFFYGDE--PKFINAVLDKVSR 155 +F ++ K +NA+L+KV + Sbjct: 103 TKYYFEDEKNFYKMVNAILEKVYK 126 >gi|148270410|ref|YP_001244870.1| sun protein [Thermotoga petrophila RKU-1] gi|147735954|gb|ABQ47294.1| sun protein [Thermotoga petrophila RKU-1] Length = 431 Score = 71.7 bits (175), Expect = 3e-11, Method: Composition-based stats. Identities = 30/123 (24%), Positives = 59/123 (47%), Gaps = 8/123 (6%) Query: 40 IISEYETYRFCADTELDVESVYLH-VDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFS 98 ++ +YE +F ++D +L D +F+ ++ GV+ +++ +D I+ L +K Sbjct: 12 LLRKYEKEKFILREDVDSVLSFLDDKDRRFFKELVWGVVRKEELLDWYINQLLKKK---- 67 Query: 99 RLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEE 158 + + LR G +L+ +SVP +SE V + + K +NAVL ++ E Sbjct: 68 DIPPAVRVALRMGAYQLLFMNSVPDYAAVSETVKLVK---NENFKKLVNAVLRRLRTVPE 124 Query: 159 IKR 161 K Sbjct: 125 PKE 127 >gi|218961232|ref|YP_001741007.1| putative 16S rRNA m5C967 methyltransferase, S-adenosyl-L-methionine-dependent [Candidatus Cloacamonas acidaminovorans] gi|167729889|emb|CAO80801.1| putative 16S rRNA m5C967 methyltransferase, S-adenosyl-L-methionine-dependent [Candidatus Cloacamonas acidaminovorans] Length = 438 Score = 71.7 bits (175), Expect = 3e-11, Method: Composition-based stats. Identities = 23/98 (23%), Positives = 46/98 (46%), Gaps = 1/98 (1%) Query: 62 LHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSV 121 D F ++ GV+ +D ++ + +K ++ D+ + +L G+ +L+ +S+ Sbjct: 35 AGEDPALFYNLVKGVIKLYLKLDYILQQYVDKK-KYTDTDIKIKVLLYMGLYQLLYLNSI 93 Query: 122 PVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEI 159 P ++E V +A F F+NAVL R E+ Sbjct: 94 PDYAAVNETVELAKTLFNPQVADFVNAVLRNYLRNPEV 131 >gi|300934517|ref|ZP_07149773.1| putative tRNA and rRNA cytosine-C5-methylase [Corynebacterium resistens DSM 45100] Length = 551 Score = 71.7 bits (175), Expect = 3e-11, Method: Composition-based stats. Identities = 22/136 (16%), Positives = 49/136 (36%), Gaps = 14/136 (10%) Query: 20 RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79 R +Q L +++ + A + + D + + +G + Sbjct: 84 RDLVLQVL-----------RDVTQEGAFANLALPKALKQERLTGRDAAFATELTYGTLRA 132 Query: 80 KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139 +D +I+ +++D ++ ILR G +++ V + V +A Sbjct: 133 LGLLDAVIAKA--AGRPVAKIDSMVLDILRLGAYQVL-RTRVDDHAAVDTAVNLAKANGE 189 Query: 140 GDEPKFINAVLDKVSR 155 G F+N VL ++R Sbjct: 190 GKASGFVNGVLRTITR 205 >gi|302824271|ref|XP_002993780.1| hypothetical protein SELMODRAFT_137586 [Selaginella moellendorffii] gi|300138376|gb|EFJ05146.1| hypothetical protein SELMODRAFT_137586 [Selaginella moellendorffii] Length = 476 Score = 71.7 bits (175), Expect = 4e-11, Method: Composition-based stats. Identities = 25/87 (28%), Positives = 47/87 (54%), Gaps = 2/87 (2%) Query: 73 IHGVMDRKQHIDLLISSCLTEKW-SFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131 + G++ K+++D +IS+ + F R++ IL +LR G EL++ VP +++E V Sbjct: 68 VAGIVRWKKYLDYVISNVYDKDQNEFERMEPILKQVLRLGAYELLK-LEVPAYAVVNEAV 126 Query: 132 CIAHDFFYGDEPKFINAVLDKVSRKEE 158 +A+ K NA+L V+ +E Sbjct: 127 KLANAASRAGAGKLANALLRAVASHKE 153 >gi|237735904|ref|ZP_04566385.1| SUN protein [Mollicutes bacterium D7] gi|229381649|gb|EEO31740.1| SUN protein [Coprobacillus sp. D7] Length = 417 Score = 71.7 bits (175), Expect = 4e-11, Method: Composition-based stats. Identities = 34/154 (22%), Positives = 59/154 (38%), Gaps = 28/154 (18%) Query: 18 IARLAAVQAL--YQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 +AR A+ L YQ + Y + +S+ D + I++G Sbjct: 1 MARTTALDVLIKYQNEQS-------------YLNITLNDYLEKSLLSRNDKDLATRIVYG 47 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135 + K +++ ++ + K +R IL + +LI VP +I E V +A Sbjct: 48 TIQNKLYLEYQLAPYIQGKKIKNR----EKMILLMSLYQLIFLDKVPDYAVIDEAVRLAK 103 Query: 136 DFFYGDEPKFINAVLDKVSR--------KEEIKR 161 KF+NA+L R K+E+KR Sbjct: 104 K-RDNFAGKFVNAILRNFLRNGKCEIDEKDELKR 136 >gi|168704061|ref|ZP_02736338.1| Fmu, rRNA SAM-dependent methyltransferase:Nop2p [Gemmata obscuriglobus UQM 2246] Length = 465 Score = 71.3 bits (174), Expect = 4e-11, Method: Composition-based stats. Identities = 20/104 (19%), Positives = 35/104 (33%), Gaps = 18/104 (17%) Query: 59 SVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCL--------TEKWSFSRLDMILCSILRA 110 + D + ++ GV+ R +D L+ + W LR Sbjct: 34 ANLSPQDRRFVTQLVFGVIRRGGTLDALLKPFIHLPTHAVQDRVWDL----------LRL 83 Query: 111 GVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVS 154 G +L VP + E V +A F+N VL +++ Sbjct: 84 GAFQLTFLTHVPKHAAVHETVELAEHVGAPKAKGFVNGVLRRIA 127 >gi|315604186|ref|ZP_07879252.1| ribosomal RNA small subunit methyltransferase B [Actinomyces sp. oral taxon 180 str. F0310] gi|315313892|gb|EFU61943.1| ribosomal RNA small subunit methyltransferase B [Actinomyces sp. oral taxon 180 str. F0310] Length = 490 Score = 71.3 bits (174), Expect = 4e-11, Method: Composition-based stats. Identities = 28/115 (24%), Positives = 54/115 (46%), Gaps = 3/115 (2%) Query: 54 ELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVL 113 + + + D + ++HG + +D +I+ + S S+LD + +LR G Sbjct: 47 QARLHGHFSDRDAAFASELVHGTLRAMGWLDWVIARHVDR--SLSQLDPRVLVLLRVGAH 104 Query: 114 ELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRSGCVSAI 168 +L++ VP +S V +A + +FINAVL ++R+ +R + AI Sbjct: 105 QLLDMR-VPDHAAVSATVDVAREHLTDGPVRFINAVLRSITREGPGEREAALEAI 158 >gi|167757026|ref|ZP_02429153.1| hypothetical protein CLORAM_02575 [Clostridium ramosum DSM 1402] gi|167703201|gb|EDS17780.1| hypothetical protein CLORAM_02575 [Clostridium ramosum DSM 1402] Length = 417 Score = 71.3 bits (174), Expect = 4e-11, Method: Composition-based stats. Identities = 34/154 (22%), Positives = 59/154 (38%), Gaps = 28/154 (18%) Query: 18 IARLAAVQAL--YQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 +AR A+ L YQ + Y + +S+ D + I++G Sbjct: 1 MARTTALDVLIKYQNEQS-------------YLNITLNDYLEKSLLSRNDKDLATRIVYG 47 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135 + K +++ ++ + K +R IL + +LI VP +I E V +A Sbjct: 48 TIQNKLYLEYQLAPYIQGKKIKNR----EKMILLMSLYQLIFLDKVPDYAVIDEAVRLAK 103 Query: 136 DFFYGDEPKFINAVLDKVSR--------KEEIKR 161 KF+NA+L R K+E+KR Sbjct: 104 K-RDNFAGKFVNAILRNFLRNGKCEIDEKDELKR 136 >gi|319777409|ref|YP_004137060.1| transcription termination factor [Mycoplasma fermentans M64] gi|238810315|dbj|BAH70105.1| hypothetical protein [Mycoplasma fermentans PG18] gi|318038484|gb|ADV34683.1| Transcription termination factor [Mycoplasma fermentans M64] Length = 139 Score = 71.3 bits (174), Expect = 4e-11, Method: Composition-based stats. Identities = 33/144 (22%), Positives = 58/144 (40%), Gaps = 21/144 (14%) Query: 14 HRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVII 73 R RL + LY+ +++ + D ES + I Sbjct: 2 QNRRQFRLGIINVLYRYELMDQKIN------------VNELFDSESNLSNEQFSHLEKI- 48 Query: 74 HGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCI 133 +S L E WS+ R+ ++ +IL G EL+ S+ ++II+E V I Sbjct: 49 ---AKNYDFYKKAVSQFLKEGWSWERISPLIRAILINGAHELM---SIEPKIIINESVEI 102 Query: 134 AHDFFYGDE--PKFINAVLDKVSR 155 +F ++ K +NA+L+KV + Sbjct: 103 TKYYFEDEKNFYKMVNAILEKVYK 126 >gi|139436886|ref|ZP_01771046.1| Hypothetical protein COLAER_00017 [Collinsella aerofaciens ATCC 25986] gi|133776533|gb|EBA40353.1| Hypothetical protein COLAER_00017 [Collinsella aerofaciens ATCC 25986] Length = 466 Score = 71.3 bits (174), Expect = 4e-11, Method: Composition-based stats. Identities = 28/142 (19%), Positives = 50/142 (35%), Gaps = 16/142 (11%) Query: 17 GIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGV 76 AR A+ L + D G +++S + + D + + GV Sbjct: 5 SPARKLALDVLMEADRRGMYARDVLSSRASAKAID-----------QRDSAFAARLALGV 53 Query: 77 MDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHD 136 + +D L+ L + ++ + LR E++ H P V +S+ V + Sbjct: 54 AATQGILDELLDQFLDK---PKKVAPRVRMALRISAFEMLYLH-TPGRVAVSQGVELVRS 109 Query: 137 FFYGDEPKFINAVLDKVSRKEE 158 NAVL KV+ E Sbjct: 110 -GAKSAAGLANAVLHKVADNVE 130 >gi|237785571|ref|YP_002906276.1| putative tRNA and rRNA cytosine-C5-methylase [Corynebacterium kroppenstedtii DSM 44385] gi|237758483|gb|ACR17733.1| putative tRNA and rRNA cytosine-C5-methylase [Corynebacterium kroppenstedtii DSM 44385] Length = 524 Score = 71.3 bits (174), Expect = 4e-11, Method: Composition-based stats. Identities = 32/161 (19%), Positives = 63/161 (39%), Gaps = 16/161 (9%) Query: 2 TIQDNKKDLKLSHR--RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVES 59 + NK + K + R + R A QAL+++D I+ L E Sbjct: 60 SSGGNKPNRKPAREHHRDLPRYVAWQALFRVDTENAFGNIIL-----------PSLMKEY 108 Query: 60 VYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECH 119 D + + +G + + +D +I C + +D + ++LR G +L+ Sbjct: 109 GLSGRDAAFTTELGYGSLRAQGLVDAVIGECSSR--PLEAIDPAVIAVLRLGTYQLLRMR 166 Query: 120 SVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIK 160 V ++ V + + F+NAVL V+++ E + Sbjct: 167 -VGNHAAVNTSVDLCQEVDKPKAKGFVNAVLHSVAQRTESE 206 >gi|89895438|ref|YP_518925.1| hypothetical protein DSY2692 [Desulfitobacterium hafniense Y51] gi|89334886|dbj|BAE84481.1| hypothetical protein [Desulfitobacterium hafniense Y51] Length = 453 Score = 71.3 bits (174), Expect = 4e-11, Method: Composition-based stats. Identities = 28/136 (20%), Positives = 50/136 (36%), Gaps = 15/136 (11%) Query: 18 IARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVM 77 +R AVQ L I E L S + ++++G + Sbjct: 5 TSRALAVQIL----------QRIEEEKAYANLVMQKSLHDLSDPRE--RQLTTLLVNGTL 52 Query: 78 DRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDF 137 + +D + L + S+L + ILR L+++ +P V I+E V + Sbjct: 53 KHRLTLDYALRRHLRK--PLSQLPREVRWILRISALQVLYLSRIPAAVAINEGVELTKK- 109 Query: 138 FYGDEPKFINAVLDKV 153 G +N+VL +V Sbjct: 110 QQGKYTSLVNSVLRRV 125 >gi|84619221|emb|CAJ42345.1| hypothetical Sun-family protein [Streptomyces steffisburgensis] Length = 475 Score = 71.3 bits (174), Expect = 4e-11, Method: Composition-based stats. Identities = 30/159 (18%), Positives = 59/159 (37%), Gaps = 11/159 (6%) Query: 1 MTIQDNKKDLKLSHRRGI----ARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELD 56 M+ Q + R R+ A +AL +D ++ E + Sbjct: 1 MSDQPRRPRSSGKPYRRPKKDPVRILAFEALRAVDERDAYANLVLPPLLRKA----REKE 56 Query: 57 VESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELI 116 + D +++G + + D +++SC+ +D + +L G +L+ Sbjct: 57 GPEKFDARDAALATELVYGTLRWQGTYDAVLASCVDR--PLGDVDPPVLDVLSLGAHQLL 114 Query: 117 ECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSR 155 +P +S V +A KF+NAVL KV++ Sbjct: 115 GTR-IPTHAAVSATVELARVVLGDGRAKFVNAVLRKVAQ 152 >gi|225874679|ref|YP_002756138.1| putative ribosomal RNA small subunit methyltransferase B [Acidobacterium capsulatum ATCC 51196] gi|225792848|gb|ACO32938.1| putative ribosomal RNA small subunit methyltransferase B [Acidobacterium capsulatum ATCC 51196] Length = 440 Score = 71.3 bits (174), Expect = 4e-11, Method: Composition-based stats. Identities = 26/135 (19%), Positives = 49/135 (36%), Gaps = 14/135 (10%) Query: 19 ARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMD 78 AR A L ++ + E++ + A D ++ G + Sbjct: 5 ARRVAFDLLQRMATSDAHSDELLRTMKVNALAAQ------------DRNLVTTLVLGTLR 52 Query: 79 RKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFF 138 + +D ++ LT RL + + LR G +L+ VP ++++ V + Sbjct: 53 WQPALDQILLQFLTR--PDQRLSEPVRAALRLGAFQLLHLDRVPPHAVLNDSVELVKLSN 110 Query: 139 YGDEPKFINAVLDKV 153 +NAVL KV Sbjct: 111 EAYATGLVNAVLRKV 125 >gi|41407232|ref|NP_960068.1| Fmu [Mycobacterium avium subsp. paratuberculosis K-10] gi|41395583|gb|AAS03451.1| Fmu [Mycobacterium avium subsp. paratuberculosis K-10] Length = 464 Score = 71.3 bits (174), Expect = 4e-11, Method: Composition-based stats. Identities = 33/150 (22%), Positives = 58/150 (38%), Gaps = 17/150 (11%) Query: 12 LSHRRGI---ARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEW 68 ++RR AR AA + L +SE + Y A L E + D + Sbjct: 9 RANRRRPLDPARAAAFEVL-----------RAVSERDAYANLALPALLRERGIIGRDAAF 57 Query: 69 FRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIIS 128 + +G + +D +I + +D +L +LR G +L+ V +S Sbjct: 58 ATELTYGTCRTRGLLDAVIGAA--AGRPPEAIDPVLLDLLRLGTYQLL-RTRVDAHAAVS 114 Query: 129 EYVCIAHDFFYGDEPKFINAVLDKVSRKEE 158 V A F F+N VL +++ ++E Sbjct: 115 TTVEQAAIEFDSARAGFVNGVLRRIAGRDE 144 >gi|310819442|ref|YP_003951800.1| ribosomal RNA small subunit methyltransferase b [Stigmatella aurantiaca DW4/3-1] gi|309392514|gb|ADO69973.1| Ribosomal RNA small subunit methyltransferase B [Stigmatella aurantiaca DW4/3-1] Length = 438 Score = 71.3 bits (174), Expect = 4e-11, Method: Composition-based stats. Identities = 29/136 (21%), Positives = 48/136 (35%), Gaps = 13/136 (9%) Query: 19 ARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMD 78 AR A+Q L + + DT L D + +G Sbjct: 3 ARTLAIQVL----------ARVRATDAYLNVVLDTALSEAPPRDARDTALATELAYGTTR 52 Query: 79 RKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFF 138 R+ +D I+ K ++ + + LR G +L VP ++E V D Sbjct: 53 RQLALDYAITRFADRK--LDAMEDRVLAALRIGAYQLFYTR-VPARAAVAETVQALKDLG 109 Query: 139 YGDEPKFINAVLDKVS 154 G F+NA+L K++ Sbjct: 110 VGRAAGFVNAILRKLA 125 >gi|300781122|ref|ZP_07090976.1| RNA methyltransferase Sun [Corynebacterium genitalium ATCC 33030] gi|300532829|gb|EFK53890.1| RNA methyltransferase Sun [Corynebacterium genitalium ATCC 33030] Length = 486 Score = 71.3 bits (174), Expect = 4e-11, Method: Composition-based stats. Identities = 29/162 (17%), Positives = 57/162 (35%), Gaps = 22/162 (13%) Query: 2 TIQDNKKDLKLSHRR--------GIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADT 53 + Q K + +R AR AA A+ +++ ++ + R Sbjct: 22 SRQGKPKQRHNTQKRPQAHSRIGDAAREAAFDAVLRVETEDAFGNLVLPQILRERKVK-- 79 Query: 54 ELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVL 113 D + + +G + +D +I+ C + + LD + + LR G Sbjct: 80 ---------GRDAAFATELAYGTLRTLGVLDAVIAECSSR--PLTELDPAVLTALRLGTY 128 Query: 114 ELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSR 155 +L+ V + V +A G F+N +L V+R Sbjct: 129 QLL-MTRVDDHAAVDTSVRLAEAAGQGKAKGFVNGILRTVAR 169 >gi|295109189|emb|CBL23142.1| ribosomal RNA small subunit methyltransferase RsmB [Ruminococcus obeum A2-162] Length = 450 Score = 71.3 bits (174), Expect = 5e-11, Method: Composition-based stats. Identities = 23/120 (19%), Positives = 47/120 (39%), Gaps = 2/120 (1%) Query: 39 EIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFS 98 +I E E L + + + G ++ + ID +I+S K Sbjct: 17 QINEEGEHSHIAIRNALSKYQFLPKQERAFITRVCEGTLEYRILIDYIINSF--SKIPVD 74 Query: 99 RLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEE 158 ++ + ILR+ + ++ VP + +E V +A + + F+N VL +R+ Sbjct: 75 KMKAPIREILRSAIYQMKFMDRVPDSAVCNEAVKLAQKKGFYNLKPFVNGVLRTAARQMN 134 >gi|226503425|ref|NP_001146234.1| hypothetical protein LOC100279806 [Zea mays] gi|219886309|gb|ACL53529.1| unknown [Zea mays] Length = 174 Score = 71.3 bits (174), Expect = 5e-11, Method: Composition-based stats. Identities = 29/138 (21%), Positives = 52/138 (37%), Gaps = 19/138 (13%) Query: 34 GCSTTEIISEYETYRFCADTELDVES-----------VYLHVDLEWFRVIIHGVM----D 78 G E+ +E E + + + D + VY + L R ++ V Sbjct: 26 GGGPLEVGTEQEAEKLASQNDKDSANEADVLSAPPKLVYNNYVLRLSRELLVAVASGWDK 85 Query: 79 RKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFF 138 ID +I ++ +R+ + IL + E+ P +V+I+E V +A F Sbjct: 86 HVVIIDKIIPQAWKDE-PVARI--LELCILHIAMAEM-ASKGTPHKVVINEAVDLAKRFC 141 Query: 139 YGDEPKFINAVLDKVSRK 156 G P+ IN L + Sbjct: 142 DGGAPRVINGCLRTFVKD 159 >gi|269114895|ref|YP_003302658.1| N utilization NusB-like protein [Mycoplasma hominis] gi|268322520|emb|CAX37255.1| N utilization substance protein B homolog(Protein nusB) [Mycoplasma hominis ATCC 23114] Length = 157 Score = 71.3 bits (174), Expect = 5e-11, Method: Composition-based stats. Identities = 32/141 (22%), Positives = 60/141 (42%), Gaps = 21/141 (14%) Query: 18 IARLAAVQALYQIDI--IGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 AR+ + +YQ ++ S EI+ + A+ ++ + D+ F I Sbjct: 24 KARMHIINCIYQSELFNKNLSIQEILENCGENQLNANEIESLKIIEAKYDV--FTRIAK- 80 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135 ++E W ++R+ + +I+ G EL+ V+I+E V I+ Sbjct: 81 -------------KFISEDWEWNRILPLSRAIIIYGEYELLFND---PRVVINEMVNISK 124 Query: 136 DFFYGDEPKFINAVLDKVSRK 156 + ++ KFIN VLD VS+ Sbjct: 125 IYSPNNDYKFINKVLDLVSKN 145 >gi|23098962|ref|NP_692428.1| hypothetical protein OB1507 [Oceanobacillus iheyensis HTE831] gi|22777190|dbj|BAC13463.1| hypothetical conserved protein [Oceanobacillus iheyensis HTE831] Length = 448 Score = 71.3 bits (174), Expect = 5e-11, Method: Composition-based stats. Identities = 23/94 (24%), Positives = 42/94 (44%), Gaps = 3/94 (3%) Query: 63 HVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVP 122 D +++G + + +D +S + K +LD+ + S+LR ++I VP Sbjct: 38 EKDERLLTEVVYGSLQHQMTLDYYLSKFVKSK---KKLDIWVQSLLRMSFYQMIYLEKVP 94 Query: 123 VEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRK 156 +I E V IA + F+N VL + R+ Sbjct: 95 DHAVIHESVEIAKQRGHKGISSFVNGVLRSLQRQ 128 >gi|33239461|ref|NP_874403.1| transcription antitermination protein NusB [Prochlorococcus marinus subsp. marinus str. CCMP1375] gi|33236986|gb|AAP99055.1| Transcription termination factor, NusB [Prochlorococcus marinus subsp. marinus str. CCMP1375] Length = 211 Score = 71.3 bits (174), Expect = 5e-11, Method: Composition-based stats. Identities = 26/111 (23%), Positives = 42/111 (37%), Gaps = 11/111 (9%) Query: 43 EYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDM 102 E +D E VDL V+++ Q I+ + + E W RL Sbjct: 103 ELSRLLTLSDQEQIRNEAMKRVDL---------VINKYQIINDALD-NVMEGWRLKRLPR 152 Query: 103 ILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKV 153 I ILR + P+ V +E V +A+ + K IN +L ++ Sbjct: 153 IDQDILRLA-YIDLYNLKTPIAVSCNEAVNLANRYSDQQGRKMINGILRRL 202 >gi|269124204|ref|YP_003306781.1| NusB antitermination factor [Streptobacillus moniliformis DSM 12112] gi|268315530|gb|ACZ01904.1| NusB antitermination factor [Streptobacillus moniliformis DSM 12112] Length = 133 Score = 70.9 bits (173), Expect = 5e-11, Method: Composition-based stats. Identities = 17/65 (26%), Positives = 31/65 (47%), Gaps = 1/65 (1%) Query: 94 KWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKV 153 W+FSRL IL+ E++ V E++I+E V ++ + FIN +L + Sbjct: 69 GWTFSRLATPEKVILKMAFFEILF-EKVGHEIVINEAVELSKVYGDEKTKTFINGILADL 127 Query: 154 SRKEE 158 + + Sbjct: 128 IKDID 132 >gi|197302406|ref|ZP_03167462.1| hypothetical protein RUMLAC_01134 [Ruminococcus lactaris ATCC 29176] gi|197298527|gb|EDY33071.1| hypothetical protein RUMLAC_01134 [Ruminococcus lactaris ATCC 29176] Length = 458 Score = 70.9 bits (173), Expect = 5e-11, Method: Composition-based stats. Identities = 30/141 (21%), Positives = 53/141 (37%), Gaps = 16/141 (11%) Query: 20 RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79 R + L +I G + +I+ E L + + + G ++ Sbjct: 8 REIVLAVLMEITENGAYSHKILGEV----------LSKYQYLEKKERAFITRVTEGTLEH 57 Query: 80 KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA--HDF 137 ID ++ K ++ +ILR+GV +L SVP + SE V +A F Sbjct: 58 LIEIDYILDQFSKVKVKKM--KPVIRNILRSGVYQLKYMDSVPDHAVCSEAVKLAVRKGF 115 Query: 138 FYGDEPKFINAVLDKVSRKEE 158 ++N VL V+R + Sbjct: 116 SGLK--GYVNGVLRSVARGLD 134 >gi|289578506|ref|YP_003477133.1| sun protein [Thermoanaerobacter italicus Ab9] gi|289528219|gb|ADD02571.1| sun protein [Thermoanaerobacter italicus Ab9] Length = 444 Score = 70.9 bits (173), Expect = 5e-11, Method: Composition-based stats. Identities = 27/96 (28%), Positives = 46/96 (47%), Gaps = 5/96 (5%) Query: 63 HVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVP 122 VD ++ + ++ GV++RK +D ++S + + I L G+ +L+ VP Sbjct: 36 EVDRDFIKKLVFGVIERKYTLDFILSFFVKK--PADEKSKIF---LEMGLYQLLYMDKVP 90 Query: 123 VEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEE 158 I+E V IA + FINAVL R++E Sbjct: 91 SYAAINETVNIAKNVLGIKRANFINAVLRSYEREKE 126 >gi|302533355|ref|ZP_07285697.1| ribosomal RNA small subunit methyltransferase B [Streptomyces sp. C] gi|302442250|gb|EFL14066.1| ribosomal RNA small subunit methyltransferase B [Streptomyces sp. C] Length = 488 Score = 70.9 bits (173), Expect = 5e-11, Method: Composition-based stats. Identities = 30/165 (18%), Positives = 61/165 (36%), Gaps = 21/165 (12%) Query: 1 MTIQDNKKDLKLSHRRGIA-----------RLAAVQALYQIDIIGCSTTEIISEYETYRF 49 M+ Q ++ S A R+ A +AL +D ++ Sbjct: 1 MSEQPRRRPAPKSGTGKQAKPYRRPQKDPVRMLAFEALRAVDERDAYANLVLPPLL---- 56 Query: 50 CADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILR 109 + + + D +++G + R+ D +I++C+ +D + +L Sbjct: 57 ---KKARQDERFQARDAALATELVYGTLRRQGTYDAVIAACVDR--PLREVDPPVLDVLS 111 Query: 110 AGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVS 154 G +L+ +P +S V +A KF+NAVL K++ Sbjct: 112 LGAHQLLGTR-IPTHAAVSASVELARVVLGDGRAKFVNAVLRKIA 155 >gi|256788927|ref|ZP_05527358.1| putative Sun-family protein [Streptomyces lividans TK24] Length = 451 Score = 70.9 bits (173), Expect = 5e-11, Method: Composition-based stats. Identities = 29/136 (21%), Positives = 54/136 (39%), Gaps = 7/136 (5%) Query: 22 AAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQ 81 A +AL +D ++ E + + D +++G + R+ Sbjct: 2 LAFEALRAVDERDAYANLVLPPLLRKA----REKEGPEKFDARDAALATELVYGTLRRQG 57 Query: 82 HIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGD 141 D +I+ C+ +D + +L GV +L+ +P +S V +A Sbjct: 58 TYDAIIADCVDR--PLREVDPPVLDVLSLGVHQLLGTR-IPSHAAVSASVELARVVLGDG 114 Query: 142 EPKFINAVLDKVSRKE 157 KF+NAVL KV+R + Sbjct: 115 RAKFVNAVLRKVARDD 130 >gi|299821751|ref|ZP_07053639.1| ribosomal RNA small subunit methyltransferase B [Listeria grayi DSM 20601] gi|299817416|gb|EFI84652.1| ribosomal RNA small subunit methyltransferase B [Listeria grayi DSM 20601] Length = 445 Score = 70.9 bits (173), Expect = 6e-11, Method: Composition-based stats. Identities = 29/150 (19%), Positives = 57/150 (38%), Gaps = 25/150 (16%) Query: 10 LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF 69 +K + R AA++ L I + +++ + ++ +D Sbjct: 1 MKKTQS---VREAALEIL-----------LKIEKNQSFSHLLINDALKKTKLEALDRNLL 46 Query: 70 RVIIHGVMDRKQHIDLLISSCLT---EKWSFSRLDMILCSILRAGVLELIECHSVPVEVI 126 +++G + R+ +D + + L E W +LR V +L+ VP I Sbjct: 47 TELVYGTLQRRLTLDYYLQTFLKKQPEDWVLE--------LLRMSVYQLVYLDKVPEHAI 98 Query: 127 ISEYVCIAHDFFYGDEPKFINAVLDKVSRK 156 + E IA + KF+N VL + R+ Sbjct: 99 LHEAGEIAKQRSHQGVTKFVNGVLRNLIRQ 128 >gi|318057055|ref|ZP_07975778.1| RNA-binding Sun protein [Streptomyces sp. SA3_actG] Length = 481 Score = 70.9 bits (173), Expect = 6e-11, Method: Composition-based stats. Identities = 32/166 (19%), Positives = 60/166 (36%), Gaps = 19/166 (11%) Query: 1 MTIQDNKKDLKLSHRRGI---------ARLAAVQALYQIDIIGCSTTEIISEYETYRFCA 51 M Q S RRG R+ A AL +D ++ Sbjct: 1 MNDQTVTAPADSSRRRGRPHRAPRKDPVRVLAFDALRAVDERDAYANLVLPALLR----- 55 Query: 52 DTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAG 111 E + + D +++G + + D +I++C+ +D + +L G Sbjct: 56 --EAREKGGFDARDAALATELVYGTLRGRGTYDAIIAACVDR--PLREVDPPVLDVLSLG 111 Query: 112 VLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKE 157 +L+ +P +S V +A +F+NAVL ++SR + Sbjct: 112 AHQLLGTR-IPTHAAVSATVELARVVLGDGRSRFVNAVLRRISRND 156 >gi|297544782|ref|YP_003677084.1| sun protein [Thermoanaerobacter mathranii subsp. mathranii str. A3] gi|296842557|gb|ADH61073.1| sun protein [Thermoanaerobacter mathranii subsp. mathranii str. A3] Length = 444 Score = 70.9 bits (173), Expect = 6e-11, Method: Composition-based stats. Identities = 33/139 (23%), Positives = 57/139 (41%), Gaps = 16/139 (11%) Query: 20 RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79 R A + L E++S+ E Y + +D + + ++ GV++R Sbjct: 4 REIAYKIL----------QEVLSK-EAYANITFNKYLKGQELKEIDRGFTKELVFGVIER 52 Query: 80 KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139 K +D ++S + + I L G+ +L+ VP I+E V IA + Sbjct: 53 KYTLDFILSFFVKK--PADEKSKI---FLEMGLYQLLYMDKVPSYAAINETVNIAKNVLG 107 Query: 140 GDEPKFINAVLDKVSRKEE 158 FINAVL R++E Sbjct: 108 IKRANFINAVLRSYEREKE 126 >gi|126656069|ref|ZP_01727453.1| Fmu, rRNA SAM-dependent methyltransferase [Cyanothece sp. CCY0110] gi|126622349|gb|EAZ93055.1| Fmu, rRNA SAM-dependent methyltransferase [Cyanothece sp. CCY0110] Length = 452 Score = 70.9 bits (173), Expect = 6e-11, Method: Composition-based stats. Identities = 27/149 (18%), Positives = 54/149 (36%), Gaps = 13/149 (8%) Query: 10 LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF 69 + L+ + AR + L I TY A ++ D Sbjct: 1 MSLTKKNTNARQLTLDIL-----------RHIDRQHTYTDIALDRSLTQNNLNPSDRSLC 49 Query: 70 RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISE 129 +++G++ ++ +D LI +K L IL G+ +L + +P ++ Sbjct: 50 TQLVYGIVRHQRTLDTLIDQLGKKKAQQQ--PPDLRRILHIGLYQLRYLNHIPPSAAVNT 107 Query: 130 YVCIAHDFFYGDEPKFINAVLDKVSRKEE 158 V +A D+ +N +L + RK + Sbjct: 108 SVNLAKDYQLNRLSGVVNGILRQYIRKSK 136 >gi|85858797|ref|YP_460999.1| 16S rRNA m(5)C 967 methyltransferase [Syntrophus aciditrophicus SB] gi|85721888|gb|ABC76831.1| 16S rRNA m(5)C 967 methyltransferase [Syntrophus aciditrophicus SB] Length = 471 Score = 70.9 bits (173), Expect = 6e-11, Method: Composition-based stats. Identities = 29/142 (20%), Positives = 55/142 (38%), Gaps = 13/142 (9%) Query: 20 RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79 R AV+ L +ID G ++ + D +++G + Sbjct: 25 RSLAVEILDRIDTTGAFAEPLLDAFLRDHLLD----------SAPDRHLLTSLVYGTLRM 74 Query: 80 KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139 + +D +I L + FS + + +ILR + + + +P ++ E V +A + Sbjct: 75 RGRLDWIIQQ-LYQG-RFSSMQGGIRNILRTALYQFLFMERIPAFALVDEAVELAKLRYP 132 Query: 140 GDEPKFINAVLDKVSRKEEIKR 161 G E K +NA+L RK Sbjct: 133 GRE-KLVNALLRNAVRKVSANE 153 >gi|226313315|ref|YP_002773209.1| ribosomal RNA small subunit methyltransferase [Brevibacillus brevis NBRC 100599] gi|226096263|dbj|BAH44705.1| probable ribosomal RNA small subunit methyltransferase [Brevibacillus brevis NBRC 100599] Length = 448 Score = 70.9 bits (173), Expect = 6e-11, Method: Composition-based stats. Identities = 24/148 (16%), Positives = 54/148 (36%), Gaps = 23/148 (15%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 + AR A+ L + E+++Y + D +++G Sbjct: 3 KKGARDIALDVL-----------NRVEEHKSYSNLELRNVLDRENLSAADAGLVTELVYG 51 Query: 76 VMDRKQHIDLLISSCL----TEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131 + RK +D ++S + + W + ++LR + ++ +P + + V Sbjct: 52 TIQRKMTLDHVLSHFVGNKKVQTW--------VRNLLRLSLYQIHFLDRIPERAAVHQAV 103 Query: 132 CIAHDFFYGDEPKFINAVLDKVSRKEEI 159 IA + +N VL V R+ ++ Sbjct: 104 EIAKKRGHQGIASMVNGVLRNVLRQPDV 131 >gi|325261900|ref|ZP_08128638.1| ribosomal RNA small subunit methyltransferase B [Clostridium sp. D5] gi|324033354|gb|EGB94631.1| ribosomal RNA small subunit methyltransferase B [Clostridium sp. D5] Length = 451 Score = 70.5 bits (172), Expect = 7e-11, Method: Composition-based stats. Identities = 22/106 (20%), Positives = 41/106 (38%), Gaps = 6/106 (5%) Query: 55 LDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLE 114 L + + + G ++ +D ++ K ++ +ILR+ V + Sbjct: 33 LSKYQYLDKKERAFITRVTEGTLEHLMELDYILGQFSKVKVKKM--KPVIRNILRSAVYQ 90 Query: 115 LIECHSVPVEVIISEYVCIA--HDFFYGDEPKFINAVLDKVSRKEE 158 L SVP + +E V +A F F+N VL V+R + Sbjct: 91 LKYMDSVPDSAVCNEAVKLAVKKGFGSLR--GFVNGVLRNVARGLD 134 >gi|255101745|ref|ZP_05330722.1| ribosomal RNA small subunit methyltransferase [Clostridium difficile QCD-63q42] Length = 441 Score = 70.5 bits (172), Expect = 8e-11, Method: Composition-based stats. Identities = 24/118 (20%), Positives = 50/118 (42%), Gaps = 3/118 (2%) Query: 41 ISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRL 100 I + + Y A + +D +I+GV++ K ++D +I+ K ++ Sbjct: 14 IEKNDNYSNIAINKHFKNLEISDMDRGLATELIYGVIENKYYLDYIINKL--SKIKVKKM 71 Query: 101 DMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEE 158 + LR G +++ S+ ++E V ++ + FINA+L R +E Sbjct: 72 STYVKIFLRMGTYQILFLDSISDYAAVNETVKLSKKY-DKKSSGFINAILRNEIRAKE 128 >gi|317501927|ref|ZP_07960111.1| sun protein [Lachnospiraceae bacterium 8_1_57FAA] gi|316896607|gb|EFV18694.1| sun protein [Lachnospiraceae bacterium 8_1_57FAA] Length = 456 Score = 70.5 bits (172), Expect = 8e-11, Method: Composition-based stats. Identities = 22/130 (16%), Positives = 48/130 (36%), Gaps = 6/130 (4%) Query: 31 DIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSC 90 +I+ E+ L + + + G ++ ID ++ Sbjct: 9 EIVAAILMEVTENGRYSHIVLREVLTKYQYLEKRERAFITRVTEGTLEHMTEIDYILDCF 68 Query: 91 LTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA--HDFFYGDEPKFINA 148 K ++ ++ +ILR+ V ++ S+P + SE V +A F ++N Sbjct: 69 --SKVKVKKMKPLIRAILRSAVYQIKYMDSIPDHAVCSESVKLAVKKGFSGLR--GYVNG 124 Query: 149 VLDKVSRKEE 158 VL V ++ + Sbjct: 125 VLRSVVKEID 134 >gi|170289195|ref|YP_001739433.1| sun protein [Thermotoga sp. RQ2] gi|170176698|gb|ACB09750.1| sun protein [Thermotoga sp. RQ2] Length = 431 Score = 70.5 bits (172), Expect = 8e-11, Method: Composition-based stats. Identities = 30/123 (24%), Positives = 60/123 (48%), Gaps = 8/123 (6%) Query: 40 IISEYETYRFCADTELDVESVYLH-VDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFS 98 ++ +YE +F + ++D +L D +F+ ++ GV+ +++ +D I+ L +K Sbjct: 12 LLRKYEKEKFISREDVDSVLSFLDDRDRRFFKELVWGVVRKEELLDWYINQLLKKK---- 67 Query: 99 RLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEE 158 + + LR G +L+ +SVP +SE V + + K +NAVL ++ E Sbjct: 68 DVPPAVRVALRMGAYQLLFMNSVPDYAAVSETVKLVK---NENFKKLVNAVLRRLRTVPE 124 Query: 159 IKR 161 K Sbjct: 125 PKE 127 >gi|126700200|ref|YP_001089097.1| ribosomal RNA small subunit methyltransferase [Clostridium difficile 630] gi|115251637|emb|CAJ69470.1| Ribosomal RNA small subunit methyltransferase B (rRNA (cytosine-C(5)-)-methyltransferase) [Clostridium difficile] Length = 441 Score = 70.5 bits (172), Expect = 8e-11, Method: Composition-based stats. Identities = 24/118 (20%), Positives = 50/118 (42%), Gaps = 3/118 (2%) Query: 41 ISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRL 100 I + + Y A + +D +I+GV++ K ++D +I+ K ++ Sbjct: 14 IEKNDNYSNIAINKHFKNLEISDMDRGLATELIYGVIENKYYLDYIINKL--SKIKVKKM 71 Query: 101 DMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEE 158 + LR G +++ S+ ++E V ++ + FINA+L R +E Sbjct: 72 STYVKIFLRMGTYQILFLDSISDYAAVNETVKLSKKY-DKKSSGFINAILRNEIRAKE 128 >gi|254976172|ref|ZP_05272644.1| ribosomal RNA small subunit methyltransferase [Clostridium difficile QCD-66c26] gi|255315305|ref|ZP_05356888.1| ribosomal RNA small subunit methyltransferase [Clostridium difficile QCD-76w55] gi|255517973|ref|ZP_05385649.1| ribosomal RNA small subunit methyltransferase [Clostridium difficile QCD-97b34] gi|255651089|ref|ZP_05397991.1| ribosomal RNA small subunit methyltransferase [Clostridium difficile QCD-37x79] gi|260684154|ref|YP_003215439.1| ribosomal RNA small subunit methyltransferase [Clostridium difficile CD196] gi|260687813|ref|YP_003218947.1| ribosomal RNA small subunit methyltransferase [Clostridium difficile R20291] gi|306520940|ref|ZP_07407287.1| ribosomal RNA small subunit methyltransferase [Clostridium difficile QCD-32g58] gi|260210317|emb|CBA64638.1| ribosomal RNA small subunit methyltransferase [Clostridium difficile CD196] gi|260213830|emb|CBE05814.1| ribosomal RNA small subunit methyltransferase [Clostridium difficile R20291] Length = 441 Score = 70.5 bits (172), Expect = 8e-11, Method: Composition-based stats. Identities = 24/118 (20%), Positives = 50/118 (42%), Gaps = 3/118 (2%) Query: 41 ISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRL 100 I + + Y A + +D +I+GV++ K ++D +I+ K ++ Sbjct: 14 IEKNDNYSNIAINKHFKNLEISDMDRGLATELIYGVIENKYYLDYIINKL--SKIKVKKM 71 Query: 101 DMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEE 158 + LR G +++ S+ ++E V ++ + FINA+L R +E Sbjct: 72 STYVKIFLRMGTYQILFLDSISDYAAVNETVKLSKKY-DKKSSGFINAILRNEIRAKE 128 >gi|302823170|ref|XP_002993239.1| hypothetical protein SELMODRAFT_136794 [Selaginella moellendorffii] gi|300138909|gb|EFJ05660.1| hypothetical protein SELMODRAFT_136794 [Selaginella moellendorffii] Length = 476 Score = 70.5 bits (172), Expect = 8e-11, Method: Composition-based stats. Identities = 25/87 (28%), Positives = 47/87 (54%), Gaps = 2/87 (2%) Query: 73 IHGVMDRKQHIDLLISSCLTEKW-SFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131 + G++ K+++D +IS+ + F R++ IL +LR G EL++ VP +++E V Sbjct: 68 VAGIVRWKKYLDYVISNVYDKDQNEFERMEPILKQVLRLGSYELLK-LEVPAYAVVNEAV 126 Query: 132 CIAHDFFYGDEPKFINAVLDKVSRKEE 158 +A+ K NA+L V+ +E Sbjct: 127 KLANAASRAGAGKLANALLRAVASHKE 153 >gi|125624853|ref|YP_001033336.1| ribosomal RNA small subunit methyltransferase B [Lactococcus lactis subsp. cremoris MG1363] gi|4210751|emb|CAA10711.1| sunL protein [Lactococcus lactis] gi|124493661|emb|CAL98648.1| Ribosomal RNA small subunit methyltransferase B [Lactococcus lactis subsp. cremoris MG1363] gi|300071650|gb|ADJ61050.1| ribosomal RNA small subunit methyltransferase B [Lactococcus lactis subsp. cremoris NZ9000] Length = 424 Score = 70.1 bits (171), Expect = 9e-11, Method: Composition-based stats. Identities = 31/148 (20%), Positives = 54/148 (36%), Gaps = 22/148 (14%) Query: 17 GIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGV 76 AR A+ L + + R D+EL VD + +++GV Sbjct: 3 KNARQTALDVL-----NDIFGNDAYANISLDRNLRDSELST------VDKGFVTALVYGV 51 Query: 77 MDRKQHIDLLISSCLTEK---WSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCI 133 + +K ++ I+ L ++ W+ +L + +++ VP+ + E V I Sbjct: 52 VSKKALLEWYITPLLKKEPKPWA--------KMLLLLTIYQVLFMDKVPISAAVDEAVKI 103 Query: 134 AHDFFYGDEPKFINAVLDKVSRKEEIKR 161 A FINAVL R E Sbjct: 104 AKRHDGQATANFINAVLRNFMRSEHRNE 131 >gi|282866194|ref|ZP_06275241.1| Fmu (Sun) domain protein [Streptomyces sp. ACTE] gi|282558978|gb|EFB64533.1| Fmu (Sun) domain protein [Streptomyces sp. ACTE] Length = 477 Score = 70.1 bits (171), Expect = 9e-11, Method: Composition-based stats. Identities = 31/156 (19%), Positives = 61/156 (39%), Gaps = 12/156 (7%) Query: 1 MTIQDNKKDLKLSHR--RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVE 58 M Q ++ K R + R A +AL +D ++ + + Sbjct: 1 MNDQQRRRPAKQHRRPEKDPVRFLAFEALRAVDERDAYANLVLPPLL-------KKARAK 53 Query: 59 SVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIEC 118 + D +++G + R+ D ++++C+ +D + ++ GV +L+ Sbjct: 54 GDFDGRDAALATELVYGTLRRQGTYDAIVAACVDR--PLREVDPPVLDVIEMGVHQLLGT 111 Query: 119 HSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVS 154 +P +S V +A KF+NAVL KVS Sbjct: 112 R-IPTHAAVSASVELARVVLGEGRAKFVNAVLRKVS 146 >gi|326522879|dbj|BAJ88485.1| predicted protein [Hordeum vulgare subsp. vulgare] Length = 275 Score = 70.1 bits (171), Expect = 9e-11, Method: Composition-based stats. Identities = 28/136 (20%), Positives = 51/136 (37%), Gaps = 19/136 (13%) Query: 36 STTEIISEYETYRFCADTELDVES-----------VYLHVDLEWFRVIIHGVM----DRK 80 E+ +E E + + E D + VY + L R ++ V Sbjct: 130 GPLEVATEEEAEKLMSQNEKDSANEAEVLSAPPRLVYNNFVLRLARDMLVAVASGWDQHV 189 Query: 81 QHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYG 140 + I+ +I ++ +R+ + IL + E+ P +V I+E V +A F G Sbjct: 190 EVINKIIPQHWKDE-PVARI--LELCILHIAMAEMT-SKGTPHKVAINEAVDLAKRFCDG 245 Query: 141 DEPKFINAVLDKVSRK 156 P+ IN L + Sbjct: 246 GAPRVINGCLRTYVKD 261 >gi|262195801|ref|YP_003267010.1| sun protein [Haliangium ochraceum DSM 14365] gi|262079148|gb|ACY15117.1| sun protein [Haliangium ochraceum DSM 14365] Length = 501 Score = 70.1 bits (171), Expect = 9e-11, Method: Composition-based stats. Identities = 20/94 (21%), Positives = 37/94 (39%), Gaps = 2/94 (2%) Query: 65 DLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVE 124 D + +G + ++ +D +++ +LD SILR E++ VP Sbjct: 79 DRALVTELCYGSLRQQMRLDRALAALTPRG--LGKLDAATLSILRVAAYEILFLERVPAH 136 Query: 125 VIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEE 158 ++ V A F N VL ++R+ E Sbjct: 137 ASVNSAVRAARRLGGQRFAGFANGVLRTLAREGE 170 >gi|255656560|ref|ZP_05401969.1| ribosomal RNA small subunit methyltransferase [Clostridium difficile QCD-23m63] gi|296449988|ref|ZP_06891752.1| ribosomal RNA small subunit methyltransferase B [Clostridium difficile NAP08] gi|296878369|ref|ZP_06902377.1| ribosomal RNA small subunit methyltransferase B [Clostridium difficile NAP07] gi|296261258|gb|EFH08089.1| ribosomal RNA small subunit methyltransferase B [Clostridium difficile NAP08] gi|296430667|gb|EFH16506.1| ribosomal RNA small subunit methyltransferase B [Clostridium difficile NAP07] Length = 441 Score = 70.1 bits (171), Expect = 9e-11, Method: Composition-based stats. Identities = 27/140 (19%), Positives = 57/140 (40%), Gaps = 14/140 (10%) Query: 19 ARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMD 78 AR + L I+ + I+++ +D +D +I+GV++ Sbjct: 3 AREVGFKVLCDIEKNNNYSNIAINKHFKNLEISD-----------IDRGLATELIYGVIE 51 Query: 79 RKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFF 138 K ++D +I+ K ++ + LR G +++ S+ ++E V ++ + Sbjct: 52 NKYYLDYIINKL--SKIKVKKMSTYVKIFLRMGTYQILFLDSISDYAAVNETVKLSKKY- 108 Query: 139 YGDEPKFINAVLDKVSRKEE 158 FINA+L R +E Sbjct: 109 DKKSSGFINAILRNEIRAKE 128 >gi|296170731|ref|ZP_06852304.1| RNA methyltransferase Sun [Mycobacterium parascrofulaceum ATCC BAA-614] gi|295894614|gb|EFG74350.1| RNA methyltransferase Sun [Mycobacterium parascrofulaceum ATCC BAA-614] Length = 461 Score = 70.1 bits (171), Expect = 9e-11, Method: Composition-based stats. Identities = 34/160 (21%), Positives = 58/160 (36%), Gaps = 18/160 (11%) Query: 3 IQDNKKDLKLSHRRGI----ARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVE 58 + + + +R AR AA + L +SE + Y A L E Sbjct: 1 MSPPRPPNRGRGKRRRPLDPARAAAFEVL-----------RAVSERDAYANLALPALLRE 49 Query: 59 SVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIEC 118 D + + +G + +D +I + S +D +L +LR G +L+ Sbjct: 50 RQISGRDAAFATELAYGTCRTRGLLDAVIGAA--AGRSPDTIDPVLLDLLRLGTYQLL-R 106 Query: 119 HSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEE 158 V +S V A F F+N VL V+ ++E Sbjct: 107 TRVDSYAAVSTTVEQAGIEFDSARAGFVNGVLRAVAARDE 146 >gi|329770489|ref|ZP_08261867.1| hypothetical protein HMPREF0433_01631 [Gemella sanguinis M325] gi|328836238|gb|EGF85907.1| hypothetical protein HMPREF0433_01631 [Gemella sanguinis M325] Length = 441 Score = 70.1 bits (171), Expect = 1e-10, Method: Composition-based stats. Identities = 20/138 (14%), Positives = 48/138 (34%), Gaps = 16/138 (11%) Query: 19 ARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMD 78 AR LY+I + ++++ + + + I++G + Sbjct: 6 ARKVVYDTLYEIFYNEAYSNITLNKFFKQNGIEEQ-----------NKRFISEIVYGTLK 54 Query: 79 RKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFF 138 K ++ ++ + R+ + IL + ++ P +I E V ++ Sbjct: 55 NKLFLEHILKTYSK-----GRVKPKVKVILLMSIYQIKFMDKTPNFAVIDEAVKLSKKIA 109 Query: 139 YGDEPKFINAVLDKVSRK 156 KF+N +L + R Sbjct: 110 GNITGKFVNGILRNIERN 127 >gi|116512767|ref|YP_811674.1| tRNA and rRNA cytosine-C5-methylase [Lactococcus lactis subsp. cremoris SK11] gi|116108421|gb|ABJ73561.1| tRNA and rRNA cytosine-C5-methylase [Lactococcus lactis subsp. cremoris SK11] Length = 424 Score = 70.1 bits (171), Expect = 1e-10, Method: Composition-based stats. Identities = 31/148 (20%), Positives = 53/148 (35%), Gaps = 22/148 (14%) Query: 17 GIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGV 76 AR A+ L + + R D+EL VD + +++GV Sbjct: 3 KNARQTALDVL-----NDIFGNDAYANISLDRNLRDSELST------VDKGFVTALVYGV 51 Query: 77 MDRKQHIDLLISSCLTEK---WSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCI 133 + +K ++ I+ L ++ W+ +L + +++ VP + E V I Sbjct: 52 VSKKALLEWYITPLLKKEPKPWA--------KMLLLLTIYQVLFMDKVPTSAAVDEAVKI 103 Query: 134 AHDFFYGDEPKFINAVLDKVSRKEEIKR 161 A FINAVL R E Sbjct: 104 AKRHDGQATANFINAVLRNFMRSEHRNE 131 >gi|153953997|ref|YP_001394762.1| hypothetical protein CKL_1372 [Clostridium kluyveri DSM 555] gi|219854611|ref|YP_002471733.1| hypothetical protein CKR_1268 [Clostridium kluyveri NBRC 12016] gi|146346878|gb|EDK33414.1| Hypothetical protein CKL_1372 [Clostridium kluyveri DSM 555] gi|219568335|dbj|BAH06319.1| hypothetical protein [Clostridium kluyveri NBRC 12016] Length = 443 Score = 70.1 bits (171), Expect = 1e-10, Method: Composition-based stats. Identities = 16/95 (16%), Positives = 41/95 (43%), Gaps = 3/95 (3%) Query: 63 HVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVP 122 D +++G + K ID ++ + + +++ + ++LR + +L +P Sbjct: 37 KKDRALITELVYGTLKYKYTIDCILKNFIKSN--LEKMNKDILNMLRISICQLRYLDKIP 94 Query: 123 VEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKE 157 +++E V + + + K +N VL R + Sbjct: 95 EFAVVNEAVEFSKNISFKLS-KLVNGVLRNYLRNK 128 >gi|322434767|ref|YP_004216979.1| Fmu (Sun) domain protein [Acidobacterium sp. MP5ACTX9] gi|321162494|gb|ADW68199.1| Fmu (Sun) domain protein [Acidobacterium sp. MP5ACTX9] Length = 459 Score = 70.1 bits (171), Expect = 1e-10, Method: Composition-based stats. Identities = 28/136 (20%), Positives = 49/136 (36%), Gaps = 14/136 (10%) Query: 19 ARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMD 78 AR AA + L + + E++ T + D ++ GV+ Sbjct: 56 ARRAAFEILMLVKAGKGHSDELLHGQWTDKL------------SEADTNLTTALVMGVLR 103 Query: 79 RKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFF 138 + +D + + L RL + LR G +L+ +P +SE V + Sbjct: 104 WEIALDARLRTLLQR--PDQRLAEPVAMALRLGAFQLLHMDRIPAHAALSESVELCRAAG 161 Query: 139 YGDEPKFINAVLDKVS 154 +NAVL KV+ Sbjct: 162 EPHATGMVNAVLRKVA 177 >gi|313113577|ref|ZP_07799165.1| ribosomal RNA small subunit methyltransferase B [Faecalibacterium cf. prausnitzii KLE1255] gi|310624092|gb|EFQ07459.1| ribosomal RNA small subunit methyltransferase B [Faecalibacterium cf. prausnitzii KLE1255] Length = 444 Score = 69.7 bits (170), Expect = 1e-10, Method: Composition-based stats. Identities = 22/88 (25%), Positives = 40/88 (45%), Gaps = 3/88 (3%) Query: 65 DLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVE 124 D + I + V++ + +D ++ L + ++LD + ILRA + + VPV Sbjct: 39 DKAFASAIFYTVLEHRGTLDYILCQFLPKG--LAKLDAPVREILRAALAQARYMQ-VPVS 95 Query: 125 VIISEYVCIAHDFFYGDEPKFINAVLDK 152 ++E V + F +NAVL K Sbjct: 96 AAVNEAVKLTRAFKKSSASGLVNAVLRK 123 >gi|289422320|ref|ZP_06424170.1| ribosomal RNA small subunit methyltransferase B [Peptostreptococcus anaerobius 653-L] gi|289157265|gb|EFD05880.1| ribosomal RNA small subunit methyltransferase B [Peptostreptococcus anaerobius 653-L] Length = 446 Score = 69.7 bits (170), Expect = 1e-10, Method: Composition-based stats. Identities = 28/118 (23%), Positives = 53/118 (44%), Gaps = 3/118 (2%) Query: 41 ISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRL 100 I + Y A + +S + D I++GV+ K+ +D +I+ K ++ Sbjct: 14 IEKNSNYSNIALNKFLKDSKLTNKDRGLATEIVYGVVANKRTLDYMINKKSKIK--VKKM 71 Query: 101 DMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEE 158 + + ILR GV +L+ V +I E V + F+NA+L +SR+++ Sbjct: 72 NHSVKIILRMGVYQLLYLDRVADYGVIDEAVKMMKKI-DRRSSGFVNAILRNISREKD 128 >gi|172040659|ref|YP_001800373.1| putative tRNA and rRNA cytosine-C5-methylase [Corynebacterium urealyticum DSM 7109] gi|171851963|emb|CAQ04939.1| putative tRNA and rRNA cytosine-C5-methylase [Corynebacterium urealyticum DSM 7109] Length = 513 Score = 69.7 bits (170), Expect = 1e-10, Method: Composition-based stats. Identities = 30/157 (19%), Positives = 54/157 (34%), Gaps = 19/157 (12%) Query: 4 QDNKKDLKLSHRRG-----IARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVE 58 Q + + + R AR AA L Q ++E + Y A + E Sbjct: 40 QQRRPEHRQEKSRRAGTGDKARDAAFAVLRQ-----------VTEEDAYGNLALPAVLRE 88 Query: 59 SVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIEC 118 D + + +G + +D +I+ +++D + LR G +L+ Sbjct: 89 RGISGRDANFATELTYGTLRATGLLDAIIAKA--AGRPVAKIDSVALDALRIGAYQLL-R 145 Query: 119 HSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSR 155 V + V + G F+N VL +SR Sbjct: 146 TRVEPHAAVDTSVELVKANGGGKASGFVNGVLRTISR 182 >gi|77917857|ref|YP_355672.1| Sun protein [Pelobacter carbinolicus DSM 2380] gi|77543940|gb|ABA87502.1| Sun protein [Pelobacter carbinolicus DSM 2380] Length = 451 Score = 69.7 bits (170), Expect = 1e-10, Method: Composition-based stats. Identities = 20/108 (18%), Positives = 45/108 (41%), Gaps = 2/108 (1%) Query: 49 FCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSIL 108 D+ L D +++GV+ + +D + L K ++++ + ++L Sbjct: 25 LALDSALQALPDMDVRDRALATELVYGVLRYRGRLDFALQQ-LCRK-PLAKVEPAVLNLL 82 Query: 109 RAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRK 156 R G ++++ +P + E V +A FIN +L + R+ Sbjct: 83 RLGCYQILQLDRIPNHAAVFETVELARRLKLQRATGFINGILRGLVRQ 130 >gi|299143974|ref|ZP_07037054.1| ribosomal RNA small subunit methyltransferase B [Peptoniphilus sp. oral taxon 386 str. F0131] gi|298518459|gb|EFI42198.1| ribosomal RNA small subunit methyltransferase B [Peptoniphilus sp. oral taxon 386 str. F0131] Length = 440 Score = 69.7 bits (170), Expect = 1e-10, Method: Composition-based stats. Identities = 24/115 (20%), Positives = 46/115 (40%), Gaps = 2/115 (1%) Query: 44 YETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMI 103 Y+ + + +S D I GV+ K ++ ++S K Sbjct: 17 YKGAFLNEELLILSKSKIDKRDYNLIVNITTGVVQNKLLLEHIVSKYSKIKIKKIH--RT 74 Query: 104 LCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEE 158 + +IL+ G+ ++ +P II+E V +A F F+N +L + R +E Sbjct: 75 ILTILQMGIYQIFFTSRIPDYSIINESVNLAKIFGNQGSAGFVNGLLRNILRDKE 129 >gi|302541076|ref|ZP_07293418.1| sun protein [Streptomyces hygroscopicus ATCC 53653] gi|302458694|gb|EFL21787.1| sun protein [Streptomyces himastatinicus ATCC 53653] Length = 482 Score = 69.7 bits (170), Expect = 1e-10, Method: Composition-based stats. Identities = 27/160 (16%), Positives = 57/160 (35%), Gaps = 16/160 (10%) Query: 1 MTIQDNKK------DLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTE 54 M+ Q ++ R+ A +AL +D ++ + Sbjct: 1 MSPQSGPPRRSHPGKPYRRPKKDPVRILAFEALRAVDERDAYANLVLPPLLR-------K 53 Query: 55 LDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLE 114 + + D +++G + + D +I+ C+ +D + +L G + Sbjct: 54 AREDGGFDARDAALTTELVYGTLRLQGTYDAIIAECVDR--PLREVDPPVLDVLSLGAHQ 111 Query: 115 LIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVS 154 L+ +P +S V +A KF+NAVL K++ Sbjct: 112 LLGTR-IPTHAAVSASVELARVVLGDGRAKFVNAVLRKIA 150 >gi|217077823|ref|YP_002335541.1| sun protein [Thermosipho africanus TCF52B] gi|217037678|gb|ACJ76200.1| sun protein [Thermosipho africanus TCF52B] Length = 415 Score = 69.7 bits (170), Expect = 1e-10, Method: Composition-based stats. Identities = 22/93 (23%), Positives = 47/93 (50%), Gaps = 12/93 (12%) Query: 65 DLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVE 124 + +F+ +I GV+ +++++D +I S L ++ + + +ILR G +LI + Sbjct: 33 EKAFFKNLIFGVLRKQEYLDWIIDSYLKKR----DIPPSIRTILRIGAYQLIFTNKPSYS 88 Query: 125 VIISEYVCIA--HDFFYGDEPKFINAVLDKVSR 155 V+ + V + F +NAVL K+++ Sbjct: 89 VV-NNCVELVEKKSF-----RGLVNAVLRKIAK 115 >gi|317495215|ref|ZP_07953585.1| ribosomal RNA small subunit methyltransferase B [Gemella moribillum M424] gi|316914637|gb|EFV36113.1| ribosomal RNA small subunit methyltransferase B [Gemella moribillum M424] Length = 441 Score = 69.7 bits (170), Expect = 1e-10, Method: Composition-based stats. Identities = 18/118 (15%), Positives = 43/118 (36%), Gaps = 5/118 (4%) Query: 41 ISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRL 100 I + + Y + + D + +++G + K ++ + + +S R+ Sbjct: 17 IFQEDAYSNITLNKYFNKYKLEEQDKRFISEVVYGTIKNKMYL-----EHILKNYSKGRV 71 Query: 101 DMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEE 158 + I+ + +L+ P II E V ++ F+N +L + R Sbjct: 72 KPKVKIIIIMAIYQLLYMDKTPSFAIIDEAVKLSKKILGNITGNFVNGILRNIERNLN 129 >gi|333028379|ref|ZP_08456443.1| putative RNA-binding Sun protein [Streptomyces sp. Tu6071] gi|332748231|gb|EGJ78672.1| putative RNA-binding Sun protein [Streptomyces sp. Tu6071] Length = 486 Score = 69.7 bits (170), Expect = 1e-10, Method: Composition-based stats. Identities = 27/146 (18%), Positives = 57/146 (39%), Gaps = 10/146 (6%) Query: 12 LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71 + R+ R+ A AL +D ++ E + + D Sbjct: 26 RAPRKDPVRVLAFDALRAVDERDAYANLVLPALLR-------EAREKGGFDARDAALATE 78 Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131 +++G + + D +I++C+ +D + +L G +L+ +P +S V Sbjct: 79 LVYGTLRGRGTYDAIIAACVDR--PLREVDPPVLDVLSLGAHQLLGTR-IPTHAAVSATV 135 Query: 132 CIAHDFFYGDEPKFINAVLDKVSRKE 157 +A +F+NAVL ++SR + Sbjct: 136 ELARVVLGDGRSRFVNAVLRRISRND 161 >gi|115454421|ref|NP_001050811.1| Os03g0656900 [Oryza sativa Japonica Group] gi|31415975|gb|AAP50995.1| unknown protein [Oryza sativa Japonica Group] gi|108710180|gb|ABF97975.1| antitermination NusB domain-containing protein, putative, expressed [Oryza sativa Japonica Group] gi|113549282|dbj|BAF12725.1| Os03g0656900 [Oryza sativa Japonica Group] gi|125545109|gb|EAY91248.1| hypothetical protein OsI_12862 [Oryza sativa Indica Group] Length = 287 Score = 69.7 bits (170), Expect = 1e-10, Method: Composition-based stats. Identities = 29/137 (21%), Positives = 51/137 (37%), Gaps = 17/137 (12%) Query: 34 GCSTTEIISEYETYRFCADTELDVES-----------VYLHVDLEWFRVIIHGVMDRKQH 82 G E+ +E E + + E D + VY + L R I+ V Sbjct: 138 GGGPLEVGTEEEAEKLMSQNEKDSANEAEVLSAPPKLVYNNFVLRLAREILVAVASGWDK 197 Query: 83 IDLLISSCLTEKW---SFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139 +I+ + W +R+ + IL + E+ P +++I+E V +A F Sbjct: 198 HVDIINKITPQNWKDEPVARI--LELCILHIAMAEMT-SKGTPHKIVINEAVDLAKRFCD 254 Query: 140 GDEPKFINAVLDKVSRK 156 G P+ IN L + Sbjct: 255 GGAPRVINGCLRTFVKD 271 >gi|251810647|ref|ZP_04825120.1| rRNA (cytosine-5-)-methyltransferase [Staphylococcus epidermidis BCM-HMP0060] gi|282876351|ref|ZP_06285218.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus epidermidis SK135] gi|251805807|gb|EES58464.1| rRNA (cytosine-5-)-methyltransferase [Staphylococcus epidermidis BCM-HMP0060] gi|281295376|gb|EFA87903.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus epidermidis SK135] Length = 435 Score = 69.4 bits (169), Expect = 1e-10, Method: Composition-based stats. Identities = 25/126 (19%), Positives = 48/126 (38%), Gaps = 12/126 (9%) Query: 35 CSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLT-- 92 + +++++ Y E+ + VD F +++G + RK +D L+ + Sbjct: 11 ETINDVLNK-GAYSNLKINEVLSTNNINTVDKNLFTELVYGTIKRKYSLDYLLKPFIKTK 69 Query: 93 -EKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLD 151 + W + +L + + + +P II E V IA +N VL Sbjct: 70 IKSW--------VRQLLWMSLYQYLYLDKIPNHAIIHEAVDIAKKRGGYHTGNIVNGVLR 121 Query: 152 KVSRKE 157 V R E Sbjct: 122 TVMRTE 127 >gi|320105842|ref|YP_004181432.1| NusB/RsmB/TIM44 [Terriglobus saanensis SP1PR4] gi|319924363|gb|ADV81438.1| NusB/RsmB/TIM44 [Terriglobus saanensis SP1PR4] Length = 419 Score = 69.4 bits (169), Expect = 1e-10, Method: Composition-based stats. Identities = 18/78 (23%), Positives = 32/78 (41%), Gaps = 2/78 (2%) Query: 82 HIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGD 141 ID ++ L F + + LR G +L+ +P ++E V +A Sbjct: 62 AIDSILRPYLQR--PFQEMPAPVLLALRLGTFQLLLLDRIPDHAALNESVELARANGAPH 119 Query: 142 EPKFINAVLDKVSRKEEI 159 +NAVL +V R+ + Sbjct: 120 AAGMVNAVLRRVQREGDA 137 >gi|328952872|ref|YP_004370206.1| sun protein [Desulfobacca acetoxidans DSM 11109] gi|328453196|gb|AEB09025.1| sun protein [Desulfobacca acetoxidans DSM 11109] Length = 456 Score = 69.4 bits (169), Expect = 2e-10, Method: Composition-based stats. Identities = 20/104 (19%), Positives = 42/104 (40%), Gaps = 3/104 (2%) Query: 52 DTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAG 111 + L H D R ++ GV+ + +D I + ++L ++ ++LR Sbjct: 31 EQTLSDHPRLSHPDRALLRELVTGVLRWRGRLDYAIGQVSHQ--PVNKLHPLVLNLLRLT 88 Query: 112 VLELIECHSVPVEVIISEYVCIAHDF-FYGDEPKFINAVLDKVS 154 +L+ +P ++E V +A F+NA K++ Sbjct: 89 TYQLLFLDRIPASAAVNESVKLAKIHRLPPALIGFVNAAARKLA 132 >gi|323464691|gb|ADX76844.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus pseudintermedius ED99] Length = 433 Score = 69.4 bits (169), Expect = 2e-10, Method: Composition-based stats. Identities = 19/126 (15%), Positives = 46/126 (36%), Gaps = 12/126 (9%) Query: 31 DIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSC 90 ++ + ++ + Y E+ D + +++G + RK +D + Sbjct: 6 ELSLMTIEAVLKD-GAYSNLKMNEMLQTYPLNPADRGLYTELVYGTIKRKLTLDYYLKPF 64 Query: 91 LT---EKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFIN 147 + + W + +L + + + VP +I+E V IA +N Sbjct: 65 VKTKIKGW--------VRRLLWMSLYQFLYLDKVPTHALINEAVNIAKKRGGAQTGNTVN 116 Query: 148 AVLDKV 153 A+L ++ Sbjct: 117 AILRQM 122 >gi|319892211|ref|YP_004149086.1| Ribosomal RNA small subunit methyltransferase B [Staphylococcus pseudintermedius HKU10-03] gi|317161907|gb|ADV05450.1| Ribosomal RNA small subunit methyltransferase B [Staphylococcus pseudintermedius HKU10-03] Length = 433 Score = 69.4 bits (169), Expect = 2e-10, Method: Composition-based stats. Identities = 19/126 (15%), Positives = 46/126 (36%), Gaps = 12/126 (9%) Query: 31 DIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSC 90 ++ + ++ + Y E+ D + +++G + RK +D + Sbjct: 6 ELSLMTIEAVLKD-GAYSNLKMNEMLQTYPLNPADRGLYTELVYGTIKRKLTLDYYLKPF 64 Query: 91 LT---EKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFIN 147 + + W + +L + + + VP +I+E V IA +N Sbjct: 65 VKTKIKGW--------VRRLLWMSLYQFLYLDKVPTHALINEAVNIAKKRGGAQTGNTVN 116 Query: 148 AVLDKV 153 A+L ++ Sbjct: 117 AILRQM 122 >gi|311894797|dbj|BAJ27205.1| hypothetical protein KSE_13770 [Kitasatospora setae KM-6054] Length = 477 Score = 69.4 bits (169), Expect = 2e-10, Method: Composition-based stats. Identities = 35/173 (20%), Positives = 63/173 (36%), Gaps = 14/173 (8%) Query: 1 MTIQDNKKDLKLSHRRGI---ARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDV 57 M+ K HRR AR+ A +AL +D I+ E Sbjct: 1 MSTPAGAKRAPRPHRRPKKDPARIVAFRALRAVDERDAYANLILPSLLREAERKGMERR- 59 Query: 58 ESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIE 117 D +++G + + D +I++C+ +D + +L G +L+ Sbjct: 60 -------DAALATELVYGTLRGQGTYDAVIAACVDR--PLREVDPPVLDVLSLGAHQLLG 110 Query: 118 CHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRSGCVSAITQ 170 +P +S V +A KF+NAVL K+S ++ V+ + Sbjct: 111 TR-IPSHAAVSATVELARVVLGDGRAKFVNAVLRKISAQDLAGWVAQVAPPYE 162 >gi|255563540|ref|XP_002522772.1| ribosomal RNA small subunit methyltransferase B, putative [Ricinus communis] gi|223538010|gb|EEF39623.1| ribosomal RNA small subunit methyltransferase B, putative [Ricinus communis] Length = 527 Score = 69.4 bits (169), Expect = 2e-10, Method: Composition-based stats. Identities = 23/96 (23%), Positives = 44/96 (45%), Gaps = 1/96 (1%) Query: 63 HVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVP 122 DL ++ G + ++ +D LI S ++ +F ++ +L ILR G E+++ P Sbjct: 110 DRDLRLVTDVVGGTIRWRRFLDHLICSLFHDENTFRSMEPLLLQILRIGAYEIVKLDMPP 169 Query: 123 VEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEE 158 V+ E V +A +N +L K+ +E Sbjct: 170 YAVV-DENVRLAKVALRPGAGNMVNGILRKLVLLKE 204 >gi|325977628|ref|YP_004287344.1| ribosomal RNA small subunit methyltransferase B [Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069] gi|325177556|emb|CBZ47600.1| ribosomal RNA small subunit methyltransferase B [Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069] Length = 440 Score = 69.4 bits (169), Expect = 2e-10, Method: Composition-based stats. Identities = 28/143 (19%), Positives = 60/143 (41%), Gaps = 15/143 (10%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 + AR A+ L E + E Y A + + D I++G Sbjct: 6 KNQARGLALLVL-----------ENVFEDGAYSNIALNQELSHTTLSPKDKSLVTEIVYG 54 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135 + RK ++ ++ + ++ +LD + +L + +L+ +P ++++ V IA Sbjct: 55 TVARKITLEWYLAHYIKDR---DKLDSWVYYLLMLSLYQLVYLDKIPAHAVVNDAVNIAK 111 Query: 136 DFFYGDEP-KFINAVLDKVSRKE 157 + KF+NAVL + +++E Sbjct: 112 NRGNKKGAEKFVNAVLRRFTKEE 134 >gi|302517945|ref|ZP_07270287.1| RNA-binding Sun protein [Streptomyces sp. SPB78] gi|302426840|gb|EFK98655.1| RNA-binding Sun protein [Streptomyces sp. SPB78] Length = 476 Score = 69.4 bits (169), Expect = 2e-10, Method: Composition-based stats. Identities = 27/146 (18%), Positives = 57/146 (39%), Gaps = 10/146 (6%) Query: 12 LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71 + R+ R+ A AL +D ++ E + + D Sbjct: 60 RAPRKDPVRVLAFDALRAVDERDAYANLVLPALLR-------EAREKGGFDARDAALATE 112 Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131 +++G + + D +I++C+ +D + +L G +L+ +P +S V Sbjct: 113 LVYGTLRGRGTYDAIIAACVDR--PLREVDPPVLDVLSLGAHQLLGTR-IPTHAAVSATV 169 Query: 132 CIAHDFFYGDEPKFINAVLDKVSRKE 157 +A +F+NAVL ++SR + Sbjct: 170 ELARVVLGDGRSRFVNAVLRRISRND 195 >gi|319401490|gb|EFV89700.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus epidermidis FRI909] Length = 435 Score = 69.4 bits (169), Expect = 2e-10, Method: Composition-based stats. Identities = 24/126 (19%), Positives = 48/126 (38%), Gaps = 12/126 (9%) Query: 35 CSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLT-- 92 + +++++ Y E+ + VD F +++G + RK +D L+ + Sbjct: 11 ETINDVLNK-GAYSNLKINEVLSTNNINTVDKNLFTELVYGTLKRKYTLDYLLKPFIKTK 69 Query: 93 -EKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLD 151 + W + +L + + + +P II E V IA +N +L Sbjct: 70 IKSW--------VRQLLWMSLYQYLYLDKIPNHAIIHEAVDIAKKRGGYHTGNIVNGILR 121 Query: 152 KVSRKE 157 V R E Sbjct: 122 TVMRTE 127 >gi|223943803|gb|ACN25985.1| unknown [Zea mays] Length = 284 Score = 69.4 bits (169), Expect = 2e-10, Method: Composition-based stats. Identities = 29/138 (21%), Positives = 52/138 (37%), Gaps = 19/138 (13%) Query: 34 GCSTTEIISEYETYRFCADTELDVES-----------VYLHVDLEWFRVIIHGVM----D 78 G E+ +E E + + + D + VY + L R ++ V Sbjct: 136 GGGPLEVGTEQEAEKLASQNDKDSANEADVLSAPPKLVYNNYVLRLSRELLVAVASGWDK 195 Query: 79 RKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFF 138 ID +I ++ +R+ + IL + E+ P +V+I+E V +A F Sbjct: 196 HVVIIDKIIPQAWKDE-PVARI--LELCILHIAMAEM-ASKGTPHKVVINEAVDLAKRFC 251 Query: 139 YGDEPKFINAVLDKVSRK 156 G P+ IN L + Sbjct: 252 DGGAPRVINGCLRTFVKD 269 >gi|258645366|ref|ZP_05732835.1| ribosomal RNA small subunit methyltransferase B [Dialister invisus DSM 15470] gi|260402715|gb|EEW96262.1| ribosomal RNA small subunit methyltransferase B [Dialister invisus DSM 15470] Length = 454 Score = 69.4 bits (169), Expect = 2e-10, Method: Composition-based stats. Identities = 29/140 (20%), Positives = 51/140 (36%), Gaps = 13/140 (9%) Query: 17 GIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGV 76 AR A +ALY+ I E Y + + +I+GV Sbjct: 10 KSARTLAFEALYE-----------IFEKNAYANLTIQSILRWCPLKKEERHLLTELIYGV 58 Query: 77 MDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHD 136 + + +IS L ++ + +L G+ +++ +P ++E V IA Sbjct: 59 CRKYNYCLWMIS--LISDRPMFKIHPAVRILLALGIYQIVFLDRIPESAAVNETVKIAKK 116 Query: 137 FFYGDEPKFINAVLDKVSRK 156 + KFIN VL R+ Sbjct: 117 VTHIGNVKFINGVLRNFLRR 136 >gi|331088259|ref|ZP_08337178.1| ribosomal RNA small subunit methyltransferase B [Lachnospiraceae bacterium 3_1_46FAA] gi|330408503|gb|EGG87969.1| ribosomal RNA small subunit methyltransferase B [Lachnospiraceae bacterium 3_1_46FAA] Length = 456 Score = 69.4 bits (169), Expect = 2e-10, Method: Composition-based stats. Identities = 22/127 (17%), Positives = 46/127 (36%), Gaps = 6/127 (4%) Query: 31 DIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSC 90 +I+ E+ L + + + G ++ ID ++ Sbjct: 9 EIVAAILMEVTENGRYSHIVLREVLTKYQYLEKRERAFITRVTEGTLEHMTEIDYILDCF 68 Query: 91 LTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA--HDFFYGDEPKFINA 148 K ++ ++ +ILR+ V ++ S+P + SE V +A F ++N Sbjct: 69 --SKVKVKKMKPLIRAILRSAVYQIKYMDSIPDHAVCSESVKLAVKKGFSGLR--GYVNG 124 Query: 149 VLDKVSR 155 VL V + Sbjct: 125 VLRSVVK 131 >gi|299136400|ref|ZP_07029583.1| Fmu (Sun) domain protein [Acidobacterium sp. MP5ACTX8] gi|298600915|gb|EFI57070.1| Fmu (Sun) domain protein [Acidobacterium sp. MP5ACTX8] Length = 456 Score = 69.4 bits (169), Expect = 2e-10, Method: Composition-based stats. Identities = 30/138 (21%), Positives = 50/138 (36%), Gaps = 18/138 (13%) Query: 19 ARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTEL--DVESVYLHVDLEWFRVIIHGV 76 ARLAA EI+ T +D L ++ D ++ G Sbjct: 41 ARLAAF--------------EILERVATSSAHSDDLLYGSGLALLSQADKNLTTALVLGT 86 Query: 77 MDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHD 136 + + +D I L L + + LR G +L+ +P +SE V +A Sbjct: 87 LRWQIALDARIKPLLQR--PELTLAQPVQTALRLGAFQLLHMDRIPAHAALSESVELARA 144 Query: 137 FFYGDEPKFINAVLDKVS 154 + +NAVL K++ Sbjct: 145 AGHPYAVGMVNAVLRKLA 162 >gi|110004976|emb|CAK99307.1| hypothetical transcription factor involved in antitermination transcription regulator protein [Spiroplasma citri] Length = 126 Score = 69.0 bits (168), Expect = 2e-10, Method: Composition-based stats. Identities = 21/81 (25%), Positives = 38/81 (46%), Gaps = 1/81 (1%) Query: 73 IHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVC 132 + ++ I I+ L W F RL ++L GV E+ H + ++I+E + Sbjct: 47 VEEILANLSDIIAKINQHLKPGWDFVRLSNYHKAVLVYGVYEICYQH-LAKAIVINESLE 105 Query: 133 IAHDFFYGDEPKFINAVLDKV 153 I + + +IN+VLD+V Sbjct: 106 ILKLYGEDVDFSYINSVLDQV 126 >gi|57866755|ref|YP_188366.1| sun protein [Staphylococcus epidermidis RP62A] gi|242242499|ref|ZP_04796944.1| rRNA (cytosine-5-)-methyltransferase [Staphylococcus epidermidis W23144] gi|57637413|gb|AAW54201.1| sun protein [Staphylococcus epidermidis RP62A] gi|242234073|gb|EES36385.1| rRNA (cytosine-5-)-methyltransferase [Staphylococcus epidermidis W23144] Length = 435 Score = 69.0 bits (168), Expect = 2e-10, Method: Composition-based stats. Identities = 24/126 (19%), Positives = 48/126 (38%), Gaps = 12/126 (9%) Query: 35 CSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLT-- 92 + +++++ Y E+ + VD F +++G + RK +D L+ + Sbjct: 11 ETINDVLNK-GAYSNLKINEVLSTNNINTVDKNLFTELVYGTLKRKYTLDYLLKPFIKTK 69 Query: 93 -EKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLD 151 + W + +L + + + +P II E V IA +N +L Sbjct: 70 IKSW--------VRQLLWMSLYQYLYLDKIPNHAIIHEAVDIAKKRGGYHTGNIVNGILR 121 Query: 152 KVSRKE 157 V R E Sbjct: 122 TVMRTE 127 >gi|94971255|ref|YP_593303.1| sun protein [Candidatus Koribacter versatilis Ellin345] gi|94553305|gb|ABF43229.1| sun protein [Candidatus Koribacter versatilis Ellin345] Length = 432 Score = 69.0 bits (168), Expect = 2e-10, Method: Composition-based stats. Identities = 20/100 (20%), Positives = 41/100 (41%), Gaps = 2/100 (2%) Query: 56 DVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLEL 115 D + D ++ G + + +D L+++ ++ +LD+ + LR +L Sbjct: 31 DRLNDLSAPDRGLATELVMGTLRWQSTLDALVATQSSQ--PLRKLDIEVLIALRLAAYQL 88 Query: 116 IECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSR 155 +P ++E V + F NAVL K+S+ Sbjct: 89 QFLDRIPANAAVNESVELVKRARKRSAVPFANAVLRKISK 128 >gi|294811534|ref|ZP_06770177.1| Putative RNA-binding Sun protein [Streptomyces clavuligerus ATCC 27064] gi|326440079|ref|ZP_08214813.1| RNA-binding Sun protein [Streptomyces clavuligerus ATCC 27064] gi|294324133|gb|EFG05776.1| Putative RNA-binding Sun protein [Streptomyces clavuligerus ATCC 27064] Length = 481 Score = 69.0 bits (168), Expect = 2e-10, Method: Composition-based stats. Identities = 27/153 (17%), Positives = 60/153 (39%), Gaps = 12/153 (7%) Query: 7 KKDLKLSHR--RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHV 64 ++ K R + R+ A +AL +D ++ + + + Sbjct: 11 RRAAKPYRRPKKDPVRILAFEALRAVDERDAYANLVLPPLLR-------KAREKGDFDAR 63 Query: 65 DLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVE 124 D +++G + + D +I++C+ +D + +L G +L+ +P Sbjct: 64 DAALATELVYGTLRLQGTYDAVIAACVDR--PLREVDPPVLDVLSLGAHQLLGTR-IPSH 120 Query: 125 VIISEYVCIAHDFFYGDEPKFINAVLDKVSRKE 157 +S V +A KF+NAVL +++R + Sbjct: 121 AAVSATVELARVVLGDGRAKFVNAVLRRIARDD 153 >gi|269218512|ref|ZP_06162366.1| ribosomal RNA small subunit methyltransferase B [Actinomyces sp. oral taxon 848 str. F0332] gi|269211623|gb|EEZ77963.1| ribosomal RNA small subunit methyltransferase B [Actinomyces sp. oral taxon 848 str. F0332] Length = 534 Score = 69.0 bits (168), Expect = 2e-10, Method: Composition-based stats. Identities = 33/140 (23%), Positives = 53/140 (37%), Gaps = 13/140 (9%) Query: 17 GIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGV 76 ARL A + L + E + Y + +D + + +G Sbjct: 67 NAARLVAFEVL-----------RAVDEDDAYANLVLPVEIARAGLNKLDAAYATNLCYGT 115 Query: 77 MDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHD 136 + + D +IS C + +D + +LR G E + P I E V IA + Sbjct: 116 LRMRGRWDAIISRC-AKGRRIYDIDPPVLDLLRMG-CEQLLAMETPPHAAIHETVVIARN 173 Query: 137 FFYGDEPKFINAVLDKVSRK 156 FF F+NAVL ++S K Sbjct: 174 FFGQGTGGFVNAVLRRISEK 193 >gi|329730006|gb|EGG66397.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus epidermidis VCU144] Length = 393 Score = 69.0 bits (168), Expect = 2e-10, Method: Composition-based stats. Identities = 24/126 (19%), Positives = 48/126 (38%), Gaps = 12/126 (9%) Query: 35 CSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLT-- 92 + +++++ Y E+ + VD F +++G + RK +D L+ + Sbjct: 11 ETINDVLNK-GAYSNLKINEVLSTNNINTVDKNLFTELVYGTIKRKYTLDYLLKPFIKTK 69 Query: 93 -EKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLD 151 + W + +L + + + +P II E V IA +N +L Sbjct: 70 IKSW--------VRQLLWMSLYQYLYLDKIPNHAIIHEAVDIAKKRGGFHTGNIVNGILR 121 Query: 152 KVSRKE 157 V R E Sbjct: 122 TVMRTE 127 >gi|118469121|ref|YP_887381.1| ribosomal RNA small subunit methyltransferase B [Mycobacterium smegmatis str. MC2 155] gi|118170408|gb|ABK71304.1| ribosomal RNA small subunit methyltransferase B [Mycobacterium smegmatis str. MC2 155] Length = 464 Score = 69.0 bits (168), Expect = 2e-10, Method: Composition-based stats. Identities = 31/140 (22%), Positives = 49/140 (35%), Gaps = 14/140 (10%) Query: 19 ARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMD 78 AR A L +SE + Y A + E D + + +G Sbjct: 20 ARRVAFDVL-----------RAVSERDAYANLALPAMLRERGIDGRDAAFATELTYGACR 68 Query: 79 RKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFF 138 +D +I R+D +L +LR G +L+ V +S V A F Sbjct: 69 SLGLLDAVIERA--AGRPTDRIDPVLLDLLRLGTYQLL-RTRVEPHAAVSTTVEQAGIEF 125 Query: 139 YGDEPKFINAVLDKVSRKEE 158 F+N VL +S ++E Sbjct: 126 DSARAGFVNGVLRTISGRDE 145 >gi|240047408|ref|YP_002960796.1| hypothetical protein MCJ_002820 [Mycoplasma conjunctivae HRC/581] gi|239984980|emb|CAT04973.1| HYPOTHETICAL PROTEIN MCJ_002820 [Mycoplasma conjunctivae] Length = 133 Score = 69.0 bits (168), Expect = 2e-10, Method: Composition-based stats. Identities = 29/138 (21%), Positives = 56/138 (40%), Gaps = 21/138 (15%) Query: 26 ALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDL 85 LYQ +++ F ELD E + + + + Sbjct: 6 LLYQSELLEEQIN------VGQIFQDHPELDSEQI----------KMFKFIAKNYSLLQK 49 Query: 86 LISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFF--YGDEP 143 LI++ L +W + R+ + +IL G+ EL ++I+E + I+ +F + Sbjct: 50 LIAAHLNSQWQWERILPLNRAILLYGISELFFSE---HRIVINEMIEISKEFTADGDKDY 106 Query: 144 KFINAVLDKVSRKEEIKR 161 FINAV++ V + + K+ Sbjct: 107 GFINAVIENVYQYLKRKK 124 >gi|153815686|ref|ZP_01968354.1| hypothetical protein RUMTOR_01922 [Ruminococcus torques ATCC 27756] gi|145846927|gb|EDK23845.1| hypothetical protein RUMTOR_01922 [Ruminococcus torques ATCC 27756] Length = 456 Score = 69.0 bits (168), Expect = 2e-10, Method: Composition-based stats. Identities = 22/127 (17%), Positives = 46/127 (36%), Gaps = 6/127 (4%) Query: 31 DIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSC 90 +I+ E+ L + + + G ++ ID ++ Sbjct: 9 EIVAAILMEVTENGRYSHIVLREVLTKYQYLEKRERAFITRVTEGTLEHMTEIDYILDCF 68 Query: 91 LTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA--HDFFYGDEPKFINA 148 K ++ ++ +ILR+ V ++ S+P + SE V +A F ++N Sbjct: 69 --SKVKVKKMKPLIRAILRSAVYQIKYMDSIPDHAVCSESVKLAVKKGFSGLR--GYVNG 124 Query: 149 VLDKVSR 155 VL V + Sbjct: 125 VLRSVVK 131 >gi|27467810|ref|NP_764447.1| RNA-binding Sun protein [Staphylococcus epidermidis ATCC 12228] gi|293366818|ref|ZP_06613494.1| RNA methyltransferase Sun [Staphylococcus epidermidis M23864:W2(grey)] gi|27315354|gb|AAO04489.1|AE016746_279 RNA-binding Sun protein [Staphylococcus epidermidis ATCC 12228] gi|291319119|gb|EFE59489.1| RNA methyltransferase Sun [Staphylococcus epidermidis M23864:W2(grey)] gi|329736213|gb|EGG72485.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus epidermidis VCU028] gi|329736541|gb|EGG72807.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus epidermidis VCU045] Length = 435 Score = 69.0 bits (168), Expect = 2e-10, Method: Composition-based stats. Identities = 24/126 (19%), Positives = 48/126 (38%), Gaps = 12/126 (9%) Query: 35 CSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLT-- 92 + +++++ Y E+ + VD F +++G + RK +D L+ + Sbjct: 11 ETINDVLNK-GAYSNLKINEVLSTNNINTVDKNLFTELVYGTIKRKYTLDYLLKPFIKTK 69 Query: 93 -EKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLD 151 + W + +L + + + +P II E V IA +N +L Sbjct: 70 IKSW--------VRQLLWMSLYQYLYLDKIPNHAIIHEAVDIAKKRGGFHTGNIVNGILR 121 Query: 152 KVSRKE 157 V R E Sbjct: 122 TVMRTE 127 >gi|94266702|ref|ZP_01290375.1| Fmu, rRNA SAM-dependent methyltransferase [delta proteobacterium MLMS-1] gi|93452643|gb|EAT03206.1| Fmu, rRNA SAM-dependent methyltransferase [delta proteobacterium MLMS-1] Length = 484 Score = 69.0 bits (168), Expect = 2e-10, Method: Composition-based stats. Identities = 32/168 (19%), Positives = 63/168 (37%), Gaps = 33/168 (19%) Query: 1 MTIQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESV 60 MT DN R +Q L + G +++ AD Sbjct: 1 MTPTDNI------------RRVTLQLLLVQEQSGQPVEQLLEHRLREHPLAD-------- 40 Query: 61 YLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHS 120 D +++GV+ + +D +++ +++ + + LR G+L+L+ Sbjct: 41 --GRDRRLLEALVYGVLRWRGLLDQVVAGYARH--PLAKMKPLTLAALRLGILQLLILER 96 Query: 121 VPVEVIISEYVCIAHDFFYGDEPK----FINAVLDKVSRKEEIKRSGC 164 +P I+E + +P+ F+NAVL K + +I+R G Sbjct: 97 LPASAAINETI---KALRAARQPRWLTGFVNAVLRKAA--ADIERLGR 139 >gi|270290371|ref|ZP_06196596.1| ribosomal RNA small subunit methyltransferase B [Pediococcus acidilactici 7_4] gi|270281152|gb|EFA26985.1| ribosomal RNA small subunit methyltransferase B [Pediococcus acidilactici 7_4] Length = 444 Score = 69.0 bits (168), Expect = 2e-10, Method: Composition-based stats. Identities = 28/137 (20%), Positives = 52/137 (37%), Gaps = 15/137 (10%) Query: 20 RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79 R AV AL ID S E+ ++ ++ VD +++GV+ Sbjct: 9 RDLAVDALESIDEGAYSNLEL------------NQVIQDADLSEVDKHLLTELVYGVLQH 56 Query: 80 KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139 + ID +++ L + + ++LR + ++ VP I +E + IA Sbjct: 57 RLTIDFYLANFLQR---PEQTPRWVINLLRTAIFQMEFLDRVPTFAIFNETIEIAKRRGS 113 Query: 140 GDEPKFINAVLDKVSRK 156 K + VL R+ Sbjct: 114 DGVRKMVTGVLRSYQRQ 130 >gi|309810728|ref|ZP_07704536.1| putative ribosomal RNA small subunit methyltransferase B [Dermacoccus sp. Ellin185] gi|308435359|gb|EFP59183.1| putative ribosomal RNA small subunit methyltransferase B [Dermacoccus sp. Ellin185] Length = 489 Score = 69.0 bits (168), Expect = 2e-10, Method: Composition-based stats. Identities = 33/160 (20%), Positives = 62/160 (38%), Gaps = 18/160 (11%) Query: 1 MTIQDNKKDLKLSHRRGI---ARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDV 57 M ++ + S RR AR AA+ L + Y ++ Sbjct: 1 MRGAGHRSEQAPSARRRTGDPARSAALAVL------------RAVDDGAYANLEMPKVLT 48 Query: 58 ESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIE 117 D + + G + R+ D +I + + S++D ++ ++LR GV +++ Sbjct: 49 RHDLSGRDAAFATELALGTIRRQGFYDRVIET--GSGRAPSQIDPVVLAVLRLGVHQILS 106 Query: 118 CHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKE 157 VPV SE V +A + F+NAVL + ++ Sbjct: 107 MR-VPVHAATSETVALAREHAGSGAAGFVNAVLRRAGERD 145 >gi|169333678|ref|ZP_02860871.1| hypothetical protein ANASTE_00062 [Anaerofustis stercorihominis DSM 17244] gi|169259672|gb|EDS73638.1| hypothetical protein ANASTE_00062 [Anaerofustis stercorihominis DSM 17244] Length = 450 Score = 68.6 bits (167), Expect = 3e-10, Method: Composition-based stats. Identities = 29/155 (18%), Positives = 71/155 (45%), Gaps = 19/155 (12%) Query: 8 KDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLE 67 K++K+S +R++A + L ++ + G + ++++ S+ + D Sbjct: 3 KNIKISP----SRVSAYKVLSEVLMTGAYSNIALTKHLA------------SIKIEADRR 46 Query: 68 WFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVII 127 I+HGV+ + ++ ++S+ + LD + L G+ ++I + +P I+ Sbjct: 47 LCTNIVHGVIKKINKLEYVLSTL--SNTPVNELDERVKISLYIGLYQIIYLNKIPEYAIV 104 Query: 128 SEYVCIAHDFFYGDEPKFINAVL-DKVSRKEEIKR 161 ++ V + F F+N +L + + +K E+K Sbjct: 105 NDSVNLVKMFVGKKASGFVNGILRNALRKKHELKE 139 >gi|160893330|ref|ZP_02074117.1| hypothetical protein CLOL250_00879 [Clostridium sp. L2-50] gi|156865022|gb|EDO58453.1| hypothetical protein CLOL250_00879 [Clostridium sp. L2-50] Length = 449 Score = 68.6 bits (167), Expect = 3e-10, Method: Composition-based stats. Identities = 27/141 (19%), Positives = 49/141 (34%), Gaps = 12/141 (8%) Query: 17 GIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGV 76 +R + L I+ E + E L + + + GV Sbjct: 3 KTSREIVLDILLDIEKNDRFAGEALGE----------ALRANQFMNKKERAYIGRLTEGV 52 Query: 77 MDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHD 136 ++K +D +++ K ++ ILR E+ SVP E +EYV + Sbjct: 53 TEQKIRLDYILNQFSKVKVKKC--KPVIRCILRMAAYEIFYMDSVPDEAACNEYVNLTAK 110 Query: 137 FFYGDEPKFINAVLDKVSRKE 157 + ++N VL V R + Sbjct: 111 RGFRTLKGYMNGVLRNVCRNK 131 >gi|259047043|ref|ZP_05737444.1| RNA methyltransferase Sun [Granulicatella adiacens ATCC 49175] gi|259036093|gb|EEW37348.1| RNA methyltransferase Sun [Granulicatella adiacens ATCC 49175] Length = 440 Score = 68.6 bits (167), Expect = 3e-10, Method: Composition-based stats. Identities = 23/91 (25%), Positives = 41/91 (45%), Gaps = 3/91 (3%) Query: 65 DLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVE 124 D + +G + RK +D + + ++ ++++ + S+LR V ++ VP Sbjct: 39 DRGLLTELFYGTIQRKLTLDFYLKPFIEKQ---KKMELWVLSLLRMTVYQMAYLDRVPDH 95 Query: 125 VIISEYVCIAHDFFYGDEPKFINAVLDKVSR 155 I E V IA + KF+N VL V R Sbjct: 96 AAIFEAVQIAKKRGHQGIAKFVNGVLRNVQR 126 >gi|33242357|ref|NP_877298.1| transcription antitermination protein NusB [Chlamydophila pneumoniae TW-183] gi|33236868|gb|AAP98955.1| hypothetical protein CpB1026 [Chlamydophila pneumoniae TW-183] Length = 131 Score = 68.6 bits (167), Expect = 3e-10, Method: Composition-based stats. Identities = 25/139 (17%), Positives = 59/139 (42%), Gaps = 12/139 (8%) Query: 24 VQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHI 83 +Q LY +D+ + ++ + + + V ++++ Q + Sbjct: 1 MQMLYALDMAPSAEDSLVPLLMSQTAVSQKHVLVALNQTKS-----------ILEKSQEL 49 Query: 84 DLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEP 143 DL+I + L + SF LD++ ++LR + E + ++I+E + + F Y + Sbjct: 50 DLIIGNAL-KNKSFDSLDLVEKNVLRLTLFEHFYSPPINKAILIAEAIRLVKKFSYSEAC 108 Query: 144 KFINAVLDKVSRKEEIKRS 162 FI A+L+ + + + Sbjct: 109 PFIQAILNDIFTDSSLNEN 127 >gi|304384751|ref|ZP_07367097.1| ribosomal RNA small subunit methyltransferase B [Pediococcus acidilactici DSM 20284] gi|304328945|gb|EFL96165.1| ribosomal RNA small subunit methyltransferase B [Pediococcus acidilactici DSM 20284] Length = 444 Score = 68.6 bits (167), Expect = 3e-10, Method: Composition-based stats. Identities = 28/137 (20%), Positives = 52/137 (37%), Gaps = 15/137 (10%) Query: 20 RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79 R AV AL ID S E+ ++ ++ VD +++GV+ Sbjct: 9 RDLAVDALESIDEGAYSNLEL------------NQVIQDADLSEVDKHLLTELVYGVLQH 56 Query: 80 KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139 + ID +++ L + + ++LR + ++ VP I +E + IA Sbjct: 57 RLTIDFYLANFLQR---PEQTPRWVINLLRTAIFQMEFLDRVPTFAIFNETIEIAKRRGS 113 Query: 140 GDEPKFINAVLDKVSRK 156 K + VL R+ Sbjct: 114 DGVRKMVTGVLRSYQRQ 130 >gi|226509581|ref|NP_001146662.1| hypothetical protein LOC100280262 [Zea mays] gi|219888225|gb|ACL54487.1| unknown [Zea mays] Length = 555 Score = 68.6 bits (167), Expect = 3e-10, Method: Composition-based stats. Identities = 27/96 (28%), Positives = 47/96 (48%), Gaps = 1/96 (1%) Query: 63 HVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVP 122 D+ VI+ G + K+++D LI S +E+ F ++ +L ILR G E+++ VP Sbjct: 138 DRDIRLVTVIVAGTVRWKRYLDYLIMSLCSEEKVFREMEPLLLQILRIGFFEILK-LDVP 196 Query: 123 VEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEE 158 + E V +A +NA+L K+ +E Sbjct: 197 AYAAVDENVRLAKVALRPGAGNMVNAILRKLVLLKE 232 >gi|295839959|ref|ZP_06826892.1| conserved hypothetical protein [Streptomyces sp. SPB74] gi|295827723|gb|EFG65557.1| conserved hypothetical protein [Streptomyces sp. SPB74] Length = 296 Score = 68.2 bits (166), Expect = 3e-10, Method: Composition-based stats. Identities = 26/146 (17%), Positives = 57/146 (39%), Gaps = 10/146 (6%) Query: 12 LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71 + R+ R+ A AL +D ++ E + + D Sbjct: 22 RAPRKDPVRVLAFDALRAVDERDAYANLVLPALLR-------EAREKGGFDARDAALATE 74 Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131 +++G + + D +I++C+ +D + +L G +L+ +P +S V Sbjct: 75 LVYGTLRGRGTYDAVIAACVDR--PLREVDPPVLDVLSLGAHQLLGTR-IPTHAAVSATV 131 Query: 132 CIAHDFFYGDEPKFINAVLDKVSRKE 157 +A +F+NAVL +++R + Sbjct: 132 ELARVVLGDGRSRFVNAVLRRIARND 157 >gi|319939671|ref|ZP_08014030.1| ribosomal RNA small subunit methyltransferase B [Streptococcus anginosus 1_2_62CV] gi|319811260|gb|EFW07566.1| ribosomal RNA small subunit methyltransferase B [Streptococcus anginosus 1_2_62CV] Length = 437 Score = 68.2 bits (166), Expect = 3e-10, Method: Composition-based stats. Identities = 31/145 (21%), Positives = 60/145 (41%), Gaps = 15/145 (10%) Query: 12 LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71 + ++ AR A+ A++ E + Y A + +E D Sbjct: 1 MVNKIKTARQTAL-AVF----------EAVFSEGAYSNIALNQTLLEVPLSSADKGLVTE 49 Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131 I++G + RK ++ +S + E +LD L +L + ++ +P +++E V Sbjct: 50 IVYGTVARKITLEWYLS-HVIENR--DKLDSWLYILLLMSLYQIQYLDKIPAHAVVNEAV 106 Query: 132 CIAHDFFYGDEPKFINAVLDKVSRK 156 +A G KF+NAVL ++ R Sbjct: 107 ELAKARKKG-SEKFVNAVLRRLLRD 130 >gi|116788226|gb|ABK24800.1| unknown [Picea sitchensis] Length = 324 Score = 68.2 bits (166), Expect = 3e-10, Method: Composition-based stats. Identities = 28/193 (14%), Positives = 59/193 (30%), Gaps = 49/193 (25%) Query: 17 GIARLAAVQALYQIDIIGCST-------------------------------------TE 39 AR A+ LY+ + G TE Sbjct: 109 RAAREFALVVLYEACVEGSDPLRLFERRMNMKTAMSAQFDQTLLEYYDHMHFCGTPLYTE 168 Query: 40 IISEYETYRFCADTELDVESVYLHVDLEW---------FRVIIHGVMDRKQHIDLLISSC 90 + + + E E+ L + + I+ V++R ++ Sbjct: 169 TEEQARVLQMEDEKEALTEAAILAAPPKLVYNKFVLSMTKKILAAVVERWDEQASILDES 228 Query: 91 LTEKWSFSRLDMI-LCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAV 149 + KW I ++ + E++ +V+I+E + +A F G P+ IN Sbjct: 229 IPSKWKDESAGRILELCLMHIAMAEIV-VLGTQYQVVINEAIDLAKRFCDGASPRIINGC 287 Query: 150 LDK-VSRKEEIKR 161 L + ++ + + Sbjct: 288 LRSFIVKENFVGK 300 >gi|332366359|gb|EGJ44110.1| RNA methyltransferase Sun [Streptococcus sanguinis SK355] Length = 438 Score = 68.2 bits (166), Expect = 4e-10, Method: Composition-based stats. Identities = 32/146 (21%), Positives = 61/146 (41%), Gaps = 15/146 (10%) Query: 12 LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71 + ++ AR A++ L E+ E Y A +S D Sbjct: 1 MESKQKKARWQALEIL----------EEVFEE-GAYSNIAINRALSQSQLSQADKGLVTE 49 Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131 +++G + RK ++ +S L E +LD L +L + +++ +P ++ E V Sbjct: 50 LVYGTVARKITLEWYLS-HLIEDR--DKLDNWLYILLELSLYQMLYLDKIPQHAVVHEAV 106 Query: 132 CIAHDFFYGDEPKFINAVLDKVSRKE 157 IA G KF+NA+L ++ R++ Sbjct: 107 EIAKIRKRG-SEKFVNALLRRIERED 131 >gi|242045062|ref|XP_002460402.1| hypothetical protein SORBIDRAFT_02g027560 [Sorghum bicolor] gi|241923779|gb|EER96923.1| hypothetical protein SORBIDRAFT_02g027560 [Sorghum bicolor] Length = 574 Score = 68.2 bits (166), Expect = 4e-10, Method: Composition-based stats. Identities = 27/96 (28%), Positives = 47/96 (48%), Gaps = 1/96 (1%) Query: 63 HVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVP 122 D+ VI+ G + K+++D LI S +E+ F ++ +L ILR G E+++ VP Sbjct: 157 DRDIRLVTVIVAGTVRWKRYLDYLIMSLCSEEKVFREMEPLLLQILRIGFFEILK-LDVP 215 Query: 123 VEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEE 158 + E V +A +NA+L K+ +E Sbjct: 216 AYAAVDENVKLAKVALRPGAGNMVNAILRKLVLLKE 251 >gi|317051327|ref|YP_004112443.1| NusB/RsmB/TIM44 [Desulfurispirillum indicum S5] gi|316946411|gb|ADU65887.1| NusB/RsmB/TIM44 [Desulfurispirillum indicum S5] Length = 133 Score = 68.2 bits (166), Expect = 4e-10, Method: Composition-based stats. Identities = 27/143 (18%), Positives = 56/143 (39%), Gaps = 16/143 (11%) Query: 10 LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF 69 + R R A++ Y + I S E + +F + E+ Sbjct: 1 MIPVPTRRNQRENALKLNYALQIFSGSFDEPHIQRTASQFGMEV------------TEFT 48 Query: 70 RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISE 129 R ++ + LI S L + + + ++ G+ EL HS P + +I+E Sbjct: 49 RELVQISLQANPACGQLIES-LAKNDDM--IAHLDRILMIQGMCELSMKHS-PAQTVINE 104 Query: 130 YVCIAHDFFYGDEPKFINAVLDK 152 Y+ +A + + +F+N V+++ Sbjct: 105 YIELAKLYGAENSFRFVNVVMNQ 127 >gi|168019738|ref|XP_001762401.1| predicted protein [Physcomitrella patens subsp. patens] gi|162686479|gb|EDQ72868.1| predicted protein [Physcomitrella patens subsp. patens] Length = 465 Score = 68.2 bits (166), Expect = 4e-10, Method: Composition-based stats. Identities = 23/87 (26%), Positives = 45/87 (51%), Gaps = 2/87 (2%) Query: 73 IHGVMDRKQHIDLLISSCLTEK-WSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131 + G++ K+++D LI S + + R++ +L ILR G+ ELI+ +P +++E V Sbjct: 51 VAGIVRWKRYLDFLIFSFFKQDVRDYDRMEPLLRQILRVGLYELIK-LEMPPHAVLNETV 109 Query: 132 CIAHDFFYGDEPKFINAVLDKVSRKEE 158 +A +N +L V R ++ Sbjct: 110 QLAKVALRAGAGNLVNGLLRDVVRHQD 136 >gi|227890677|ref|ZP_04008482.1| 16S rRNA m(5)C 967 methyltransferase [Lactobacillus salivarius ATCC 11741] gi|227867615|gb|EEJ75036.1| 16S rRNA m(5)C 967 methyltransferase [Lactobacillus salivarius ATCC 11741] Length = 445 Score = 68.2 bits (166), Expect = 4e-10, Method: Composition-based stats. Identities = 28/142 (19%), Positives = 59/142 (41%), Gaps = 14/142 (9%) Query: 15 RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74 + RL AV+ L T + S+ TY A ++ E+ D + I++ Sbjct: 2 KNKTVRLLAVELL----------TRVESQ-GTYSNLALNKVIEENNLSVKDTKLLTTIVY 50 Query: 75 GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134 GV+ K ++ + + + +RL + + +L + +++ +P + +E + IA Sbjct: 51 GVIQHKLTLEYWLEPFIKKA---NRLQLWVKELLLVSLYQMVYLDKIPDRAVFNESIEIA 107 Query: 135 HDFFYGDEPKFINAVLDKVSRK 156 + KF+ VL + R Sbjct: 108 KIKGHTGIRKFVTGVLHSIRRN 129 >gi|207110956|ref|ZP_03245118.1| transcription antitermination protein NusB [Helicobacter pylori HPKX_438_CA4C1] Length = 74 Score = 67.8 bits (165), Expect = 4e-10, Method: Composition-based stats. Identities = 19/64 (29%), Positives = 30/64 (46%), Gaps = 1/64 (1%) Query: 57 VESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELI 116 E + L + + +GV++R ID LI L + W F RL + +ILR G E+ Sbjct: 11 EEKKIKNNQLAFALSLFNGVLERINEIDALIEPHL-KDWDFKRLGSMEKAILRLGAYEIG 69 Query: 117 ECHS 120 + Sbjct: 70 FTPT 73 >gi|254775818|ref|ZP_05217334.1| Fmu [Mycobacterium avium subsp. avium ATCC 25291] Length = 390 Score = 67.8 bits (165), Expect = 4e-10, Method: Composition-based stats. Identities = 31/140 (22%), Positives = 53/140 (37%), Gaps = 14/140 (10%) Query: 19 ARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMD 78 AR AA + L +SE + Y A L E D + + +G Sbjct: 19 ARGAAFEVL-----------RAVSERDAYANLALPALLRERGITGRDAAFATELTYGTCR 67 Query: 79 RKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFF 138 + +D +I + +D +L +LR G +L+ V +S V A F Sbjct: 68 TRGLLDAVIGAA--AGRPPEAIDPVLLDLLRLGTYQLL-RTRVDAHAAVSTTVEQAAIEF 124 Query: 139 YGDEPKFINAVLDKVSRKEE 158 F+N VL +++ ++E Sbjct: 125 GSARAGFVNGVLRRIAGRDE 144 >gi|170016869|ref|YP_001727788.1| putative rRNA methylase [Leuconostoc citreum KM20] gi|169803726|gb|ACA82344.1| Putative rRNA methylase [Leuconostoc citreum KM20] Length = 450 Score = 67.8 bits (165), Expect = 4e-10, Method: Composition-based stats. Identities = 25/148 (16%), Positives = 58/148 (39%), Gaps = 19/148 (12%) Query: 12 LSHRRGIA---RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEW 68 +S +R + R+ AVQ L + Y ++ + D Sbjct: 1 MSDKRVYSNNPRVLAVQTL------------AKIKNGAYSNLQLNQVIKKHALNDSDKRL 48 Query: 69 FRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIIS 128 +++GV+ + D ++ + +K +++ + +L + +L +P I + Sbjct: 49 LTTLVYGVIQHRLTFDYWLTPFIKQK----KIEPWVRELLYTALFQLQYLDKIPQHAIFN 104 Query: 129 EYVCIAHDFFYGDEPKFINAVLDKVSRK 156 E + +A + KF+ A+L +SR+ Sbjct: 105 ESIEVAKTLGHIGTAKFVTAILHNISRQ 132 >gi|315612653|ref|ZP_07887565.1| ribosomal RNA small subunit methyltransferase B [Streptococcus sanguinis ATCC 49296] gi|315315240|gb|EFU63280.1| ribosomal RNA small subunit methyltransferase B [Streptococcus sanguinis ATCC 49296] Length = 437 Score = 67.8 bits (165), Expect = 5e-10, Method: Composition-based stats. Identities = 30/139 (21%), Positives = 56/139 (40%), Gaps = 15/139 (10%) Query: 18 IARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVM 77 AR A+ L E + + Y A + S D I++G + Sbjct: 6 TARSLALAVL-----------EDVFINQAYSNIALNKHLKGSQLSEADKSLVTEIVYGTV 54 Query: 78 DRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDF 137 RK ++ +S + ++ +LD L +L +L +P +++E V +A + Sbjct: 55 ARKLTLEWYLSHFIEDR---DKLDNWLYILLLLSAYQLRYLDKIPNHAVVNEAVELAKER 111 Query: 138 FYGDEPKFINAVLDKVSRK 156 G K +NAVL ++ R+ Sbjct: 112 KKG-SEKLVNAVLRRILRE 129 >gi|327462453|gb|EGF08778.1| RNA methyltransferase Sun [Streptococcus sanguinis SK1057] Length = 438 Score = 67.8 bits (165), Expect = 5e-10, Method: Composition-based stats. Identities = 32/145 (22%), Positives = 61/145 (42%), Gaps = 15/145 (10%) Query: 12 LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71 + ++ AR A++ L E+ E Y A +S D Sbjct: 1 MESKQKTARWQALEIL----------EEVFEE-RAYSNIALNRALSQSPLSQADKGLVTE 49 Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131 +++G + RK ++ +S L E +LD L +L + +++ +P ++ E V Sbjct: 50 LVYGTVARKITLEWYLS-HLIEDR--DKLDSWLYILLMISLYQMLYLDKIPQHAVVHEAV 106 Query: 132 CIAHDFFYGDEPKFINAVLDKVSRK 156 IA +G KF+NA+L ++ R+ Sbjct: 107 EIAKIRKHG-SEKFVNALLRRIERE 130 >gi|255325951|ref|ZP_05367041.1| ribosomal RNA small subunit methyltransferase B [Rothia mucilaginosa ATCC 25296] gi|255296966|gb|EET76293.1| ribosomal RNA small subunit methyltransferase B [Rothia mucilaginosa ATCC 25296] Length = 659 Score = 67.8 bits (165), Expect = 5e-10, Method: Composition-based stats. Identities = 33/168 (19%), Positives = 63/168 (37%), Gaps = 22/168 (13%) Query: 2 TIQDNKKDLKLSHRRGIARLAAVQALYQI----------DIIGCSTTEII---SEYETYR 48 T Q NK + + R AR + D + +++ +E + Y Sbjct: 130 TSQRNKSGHERNRRSMSARE------FSAAAPSARSRTADTARATVFDVLRSVAESDAYA 183 Query: 49 FCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSIL 108 + H D + + +G + + D ++S C+ ++ +L Sbjct: 184 NLVLPKAIRSHRLDHRDAGFATELTYGTLRHQGTYDAILSRCVDR--PIEKVGTTTLIVL 241 Query: 109 RAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRK 156 R GV +L+ VP +++ V +A + FINAVL +VS + Sbjct: 242 RMGVHQLLNMR-VPAHAALNQSVSLAREKIGAGPASFINAVLRRVSER 288 >gi|326487822|dbj|BAK05583.1| predicted protein [Hordeum vulgare subsp. vulgare] Length = 546 Score = 67.8 bits (165), Expect = 5e-10, Method: Composition-based stats. Identities = 28/91 (30%), Positives = 48/91 (52%), Gaps = 1/91 (1%) Query: 63 HVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVP 122 D+ VI+ G + K++ID LI S +E+ FS ++ +L ILR G E+++ +VP Sbjct: 129 DRDIRLVTVIVAGTVRWKRYIDYLIMSLCSEEKVFSNMEPLLLQILRIGFYEILK-LNVP 187 Query: 123 VEVIISEYVCIAHDFFYGDEPKFINAVLDKV 153 ++ E V +A +NA+L K+ Sbjct: 188 AYAVVDENVRLAKVALRPGAGNMVNAILRKL 218 >gi|291166482|gb|EFE28528.1| ribosomal RNA small subunit methyltransferase B [Filifactor alocis ATCC 35896] Length = 440 Score = 67.8 bits (165), Expect = 5e-10, Method: Composition-based stats. Identities = 16/99 (16%), Positives = 41/99 (41%), Gaps = 3/99 (3%) Query: 62 LHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSV 121 + D ++ +++G ++ + +D +I +L + +IL + ++ V Sbjct: 36 IDRDRVFYTELVYGTLENIKFLDYVIDKF--SNVKVDKLSKEVLTILEVSLYQIHYMDGV 93 Query: 122 PVEVIISEYVCIAH-DFFYGDEPKFINAVLDKVSRKEEI 159 +++E V +A + P F+N +L + R Sbjct: 94 QNFAVVNEMVNLAKVVWHNARIPSFVNGILRNILRNPNA 132 >gi|290961866|ref|YP_003493048.1| RNA-binding Sun protein [Streptomyces scabiei 87.22] gi|260651392|emb|CBG74514.1| putative RNA-binding Sun protein [Streptomyces scabiei 87.22] Length = 452 Score = 67.8 bits (165), Expect = 5e-10, Method: Composition-based stats. Identities = 26/134 (19%), Positives = 52/134 (38%), Gaps = 7/134 (5%) Query: 22 AAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQ 81 A +AL +D ++ + + D +++G + R+ Sbjct: 2 LAFEALRAVDERDAYANLVLPPLLRRARQKE----GPEKFDARDAALATELVYGTLRRQG 57 Query: 82 HIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGD 141 D +I+SC+ +D + +L G +L+ +P +S V +A Sbjct: 58 TYDAVIASCVDR--PLREVDPPVLDVLSLGAHQLLGTR-IPTHAAVSASVDLARVVLGDG 114 Query: 142 EPKFINAVLDKVSR 155 KF+NAVL K+++ Sbjct: 115 RAKFVNAVLRKIAQ 128 >gi|289644960|ref|ZP_06477001.1| NusB/RsmB/TIM44 [Frankia symbiont of Datisca glomerata] gi|289505233|gb|EFD26291.1| NusB/RsmB/TIM44 [Frankia symbiont of Datisca glomerata] Length = 518 Score = 67.8 bits (165), Expect = 5e-10, Method: Composition-based stats. Identities = 26/153 (16%), Positives = 51/153 (33%), Gaps = 14/153 (9%) Query: 7 KKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDL 66 ++ + R ARL A ++ + E Y L D Sbjct: 13 QRARPPASRADPARLLA------WEV-----LRAVDERGAYANLLLPALLAGRQLSARDR 61 Query: 67 EWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVI 126 + + +G + +D L+++ +D + LR G +L+ VP Sbjct: 62 GFATELTYGTLRALGVLDGLLAT--VANRPVDEVDPPVRDALRLGAYQLL-RTRVPARAA 118 Query: 127 ISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEI 159 + V + +F NAVL +++ + E Sbjct: 119 VDSTVDLVRRTSGERPVRFANAVLRRLAARLEA 151 >gi|188585963|ref|YP_001917508.1| sun protein [Natranaerobius thermophilus JW/NM-WN-LF] gi|179350650|gb|ACB84920.1| sun protein [Natranaerobius thermophilus JW/NM-WN-LF] Length = 462 Score = 67.8 bits (165), Expect = 5e-10, Method: Composition-based stats. Identities = 29/142 (20%), Positives = 55/142 (38%), Gaps = 13/142 (9%) Query: 17 GIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGV 76 +R A + T II + + Y +L ++ L D I +G Sbjct: 4 KSSRELAF----------VAYTRIIQD-QAYSNLVLNQLLGKTDLLAQDKALASRITYGT 52 Query: 77 MDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHD 136 + + ID + + S+L +LR G +++ VP ++E V +AH Sbjct: 53 LQWQGLIDYYLKTLSHR--PLSKLSNKALFLLRMGAYQILFLDRVPPSASVNETVKVAHR 110 Query: 137 FFYGDEPKFINAVLDKVSRKEE 158 + F+N +L + RK++ Sbjct: 111 RTHKGIANFVNGILRNLIRKKD 132 >gi|268316481|ref|YP_003290200.1| sun protein [Rhodothermus marinus DSM 4252] gi|262334015|gb|ACY47812.1| sun protein [Rhodothermus marinus DSM 4252] Length = 453 Score = 67.4 bits (164), Expect = 6e-10, Method: Composition-based stats. Identities = 20/91 (21%), Positives = 38/91 (41%), Gaps = 3/91 (3%) Query: 69 FRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIIS 128 + GV ++ +D L++ + ++ L ILR G+ EL+ P ++ Sbjct: 52 ATEYVAGVTRWRRWLDFLLAQNYRG--RYDSMEPRLRQILRLGLYELLFT-DTPPYAALN 108 Query: 129 EYVCIAHDFFYGDEPKFINAVLDKVSRKEEI 159 E V +A +NAVL + R+ + Sbjct: 109 EAVELARRLVRPQAGAVVNAVLRSLLRQRDF 139 >gi|261885488|ref|ZP_06009527.1| transcription antitermination protein NusB [Campylobacter fetus subsp. venerealis str. Azul-94] Length = 92 Score = 67.4 bits (164), Expect = 6e-10, Method: Composition-based stats. Identities = 21/102 (20%), Positives = 38/102 (37%), Gaps = 13/102 (12%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 R R + V LY + G E +E+ + + + + +G Sbjct: 4 RHQVRQSVVSLLYANQM-GSEMEEFSNEFLEETKIRNDQ-----------KSFTLTLYNG 51 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIE 117 V+D ID + + L + W + + +ILR G +LI Sbjct: 52 VLDNLNLIDEALDAHLGK-WKLVEIGAVERAILRLGAYKLIY 92 >gi|56750589|ref|YP_171290.1| sun protein [Synechococcus elongatus PCC 6301] gi|56685548|dbj|BAD78770.1| sun protein [Synechococcus elongatus PCC 6301] Length = 405 Score = 67.4 bits (164), Expect = 6e-10, Method: Composition-based stats. Identities = 20/90 (22%), Positives = 45/90 (50%), Gaps = 2/90 (2%) Query: 71 VIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEY 130 +++G + R++ +D LI L + ++ +L ++L+ G+ +L +P ++E Sbjct: 3 ELVYGCVRRQRTLDALID--LLAQRPAAQQPPVLRTVLQLGLYQLRYLEQIPTAAAVAET 60 Query: 131 VCIAHDFFYGDEPKFINAVLDKVSRKEEIK 160 V +A G +NA+L + R+ E + Sbjct: 61 VQLAKQLGLGGLSGAVNAILRQYLRQSEER 90 >gi|284050071|ref|ZP_06380281.1| Fmu, rRNA SAM-dependent methyltransferase [Arthrospira platensis str. Paraca] gi|291566504|dbj|BAI88776.1| ribosomal RNA small subunit methyltransferase B [Arthrospira platensis NIES-39] Length = 447 Score = 67.4 bits (164), Expect = 6e-10, Method: Composition-based stats. Identities = 27/143 (18%), Positives = 48/143 (33%), Gaps = 13/143 (9%) Query: 20 RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79 R A L I G ++ E D D +++G R Sbjct: 6 RQLAFVTLRDIQRRGAFADIVLDEKLRQADLKD-----------ADRRLGTELVYGCTRR 54 Query: 80 KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139 ++ +D +I L +K + L IL G+ +L ++P ++ V + Sbjct: 55 RRTLDAIIDR-LAKK-PAHQQPPDLRIILHLGLYQLCFSSNIPPSAAVNTTVDLTKVNNL 112 Query: 140 GDEPKFINAVLDKVSRKEEIKRS 162 F+N +L + R E S Sbjct: 113 SGLGGFVNGLLRQYLRLVEAGNS 135 >gi|283457829|ref|YP_003362427.1| tRNA and rRNA cytosine-C5-methylase [Rothia mucilaginosa DY-18] gi|283133842|dbj|BAI64607.1| tRNA and rRNA cytosine-C5-methylase [Rothia mucilaginosa DY-18] Length = 697 Score = 67.4 bits (164), Expect = 6e-10, Method: Composition-based stats. Identities = 33/168 (19%), Positives = 62/168 (36%), Gaps = 22/168 (13%) Query: 2 TIQDNKKDLKLSHRRGIARLAAVQALYQI----------DIIGCSTTEII---SEYETYR 48 T Q NK + + R AR + D + E++ +E + Y Sbjct: 168 TSQRNKSGHERNRRSMSARE------FSAAAPSARSRTADTARATVFEVLRSVAESDAYA 221 Query: 49 FCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSIL 108 + H D + + +G + + D ++ C+ ++ +L Sbjct: 222 NLVLPKAIRSHRLDHRDAGFATELTYGTLRHQGTYDAILRHCVDR--PLEKVGTTTLIVL 279 Query: 109 RAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRK 156 R GV +L+ VP +++ V +A + FINAVL +VS + Sbjct: 280 RMGVHQLLNMR-VPAHAALNQSVSLAREKIGAGPASFINAVLRRVSER 326 >gi|125587334|gb|EAZ27998.1| hypothetical protein OsJ_11964 [Oryza sativa Japonica Group] Length = 287 Score = 67.4 bits (164), Expect = 6e-10, Method: Composition-based stats. Identities = 26/129 (20%), Positives = 49/129 (37%), Gaps = 8/129 (6%) Query: 33 IGCSTTEIISEYE--TYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSC 90 G +++S+ E + + VY + L R I+ V +I+ Sbjct: 146 TGEEAEKLMSQNEKDSANEAEVLSAPPKLVYNNFVLRLAREILVAVASGWDKHVDIINKI 205 Query: 91 LTEKW---SFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFIN 147 + W +R+ + IL + E+ P +++I+E V +A F G P+ IN Sbjct: 206 TPQNWKDEPVARI--LELCILHIAMAEMT-SKGTPHKIVINEAVDLAKRFCDGGAPRVIN 262 Query: 148 AVLDKVSRK 156 L + Sbjct: 263 GCLRTFVKD 271 >gi|67924848|ref|ZP_00518244.1| Fmu, rRNA SAM-dependent methyltransferase [Crocosphaera watsonii WH 8501] gi|67853307|gb|EAM48670.1| Fmu, rRNA SAM-dependent methyltransferase [Crocosphaera watsonii WH 8501] Length = 452 Score = 67.4 bits (164), Expect = 6e-10, Method: Composition-based stats. Identities = 26/139 (18%), Positives = 50/139 (35%), Gaps = 13/139 (9%) Query: 17 GIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGV 76 AR A++ L +ID T ++ +S D +++G+ Sbjct: 8 SNARQLALKILLKIDRKNSYTDVALNRALN-----------QSNLSSSDRSLCTELVYGI 56 Query: 77 MDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHD 136 + ++ +D LI +K L IL G+ +L +P ++ V +A D Sbjct: 57 IRHQRTLDSLIDQLGKKKAQQQ--PPNLRRILHIGLYQLRYLDHIPPSAAVNTSVDLAKD 114 Query: 137 FFYGDEPKFINAVLDKVSR 155 +N +L + R Sbjct: 115 NKLQRLSGVVNGILRQYIR 133 >gi|237738183|ref|ZP_04568664.1| 16S rRNA m(5)C 967 methyltransferase [Fusobacterium mortiferum ATCC 9817] gi|229420063|gb|EEO35110.1| 16S rRNA m(5)C 967 methyltransferase [Fusobacterium mortiferum ATCC 9817] Length = 433 Score = 67.4 bits (164), Expect = 6e-10, Method: Composition-based stats. Identities = 29/130 (22%), Positives = 51/130 (39%), Gaps = 17/130 (13%) Query: 43 EYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSC---LTEKWSFSR 99 E + A E E+ + + + +GV+ K +D I + + W Sbjct: 15 ENGKFSNIALNEYFKENNLSKKERGFITELFYGVIRNKIFLDYEIDKRTTTIKKDW---- 70 Query: 100 LDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRK--- 156 + +ILR + ++ +S + +I E +A F KFIN VL R+ Sbjct: 71 ----IRNILRISMYQISFMNS-DDKGVIWEATELAKKKFSVPVGKFINGVLRSYQREWQE 125 Query: 157 --EEIKRSGC 164 +E+K SG Sbjct: 126 DVKELKESGK 135 >gi|270285005|ref|ZP_06194399.1| transcription antitermination protein NusB [Chlamydia muridarum Nigg] gi|270289028|ref|ZP_06195330.1| transcription antitermination protein NusB [Chlamydia muridarum Weiss] gi|301336403|ref|ZP_07224605.1| transcription antitermination protein NusB [Chlamydia muridarum MopnTet14] Length = 162 Score = 67.4 bits (164), Expect = 7e-10, Method: Composition-based stats. Identities = 26/141 (18%), Positives = 57/141 (40%), Gaps = 15/141 (10%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 + R +QALY +++ ++S T E+ ++ + + Sbjct: 21 KQKLRELVLQALYALEMAPKGEDSLVSLLMT-----------EASVSKKNVLYALMFCKA 69 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHS---VPVEVIISEYVC 132 + + +D L+++ + + + L +I +ILR + E + +P V+I+E Sbjct: 70 IRANQSELDALLNATI-RTTTLANLTIIERNILRMMLFEHQQNQESSPIPTAVLIAETTR 128 Query: 133 IAHDFFYGDEPKFINAVLDKV 153 + F Y + I AVL + Sbjct: 129 LIKKFSYVEGSSLILAVLGSI 149 >gi|315924509|ref|ZP_07920730.1| RNA methyltransferase Sun [Pseudoramibacter alactolyticus ATCC 23263] gi|315622213|gb|EFV02173.1| RNA methyltransferase Sun [Pseudoramibacter alactolyticus ATCC 23263] Length = 440 Score = 67.4 bits (164), Expect = 7e-10, Method: Composition-based stats. Identities = 31/142 (21%), Positives = 56/142 (39%), Gaps = 17/142 (11%) Query: 17 GIARLAAVQALYQIDIIGC-STTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 AR A ++L +ID G S EI F A+ D + ++++G Sbjct: 9 NNAREQAYKSLLKIDREGAFSNLEIRQTLSRLSFNAE------------DANLYTLLVYG 56 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135 V+ + +D + + E R+D ILR ++++ +P +SE V + Sbjct: 57 VLQNQIFLDYCLDQLIKE---PKRVDFETREILRIAAYQILKLDRIPDYAAVSEAVLLCG 113 Query: 136 DFFYGDEPKFINAVLDKVSRKE 157 F+N VL + R + Sbjct: 114 K-VNRRAKGFVNGVLRNLIRNK 134 >gi|15834839|ref|NP_296598.1| transcription antitermination protein NusB [Chlamydia muridarum Nigg] gi|13878610|sp|Q9PL88|NUSB_CHLMU RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|7190258|gb|AAF39091.1| N utilization substance protein B, putative [Chlamydia muridarum Nigg] Length = 164 Score = 67.4 bits (164), Expect = 7e-10, Method: Composition-based stats. Identities = 26/141 (18%), Positives = 57/141 (40%), Gaps = 15/141 (10%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 + R +QALY +++ ++S T E+ ++ + + Sbjct: 23 KQKLRELVLQALYALEMAPKGEDSLVSLLMT-----------EASVSKKNVLYALMFCKA 71 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHS---VPVEVIISEYVC 132 + + +D L+++ + + + L +I +ILR + E + +P V+I+E Sbjct: 72 IRANQSELDALLNATI-RTTTLANLTIIERNILRMMLFEHQQNQESSPIPTAVLIAETTR 130 Query: 133 IAHDFFYGDEPKFINAVLDKV 153 + F Y + I AVL + Sbjct: 131 LIKKFSYVEGSSLILAVLGSI 151 >gi|205373322|ref|ZP_03226126.1| sun protein [Bacillus coahuilensis m4-4] Length = 267 Score = 67.4 bits (164), Expect = 7e-10, Method: Composition-based stats. Identities = 24/140 (17%), Positives = 49/140 (35%), Gaps = 22/140 (15%) Query: 20 RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79 R AA++ L E + + ++Y + D+ + +G + R Sbjct: 6 REAALEVL-----------EQVEKNQSYSNLLLNHTIEKYEIKGPDVGLLTELTYGSIQR 54 Query: 80 KQHIDLLISSCL---TEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHD 136 K +D + + E W + +L + +++ VP I E V IA Sbjct: 55 KMTLDYYLKPFIRKKVENW--------VRLLLHLSLYQMLYLDRVPERAAIHEAVEIAKK 106 Query: 137 FFYGDEPKFINAVLDKVSRK 156 + +N +L + R+ Sbjct: 107 RGHKGIAGLVNGILRSIQRE 126 >gi|322392343|ref|ZP_08065804.1| RNA methyltransferase Sun [Streptococcus peroris ATCC 700780] gi|321144878|gb|EFX40278.1| RNA methyltransferase Sun [Streptococcus peroris ATCC 700780] Length = 437 Score = 67.0 bits (163), Expect = 7e-10, Method: Composition-based stats. Identities = 31/139 (22%), Positives = 57/139 (41%), Gaps = 15/139 (10%) Query: 18 IARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVM 77 AR A++ L E + + Y + S VD +++G + Sbjct: 6 TARSLALEVL-----------EDVLVNQAYSNITLNKHLKGSQLSVVDKGLVTELVYGTV 54 Query: 78 DRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDF 137 RK ++ IS + ++ +LD L +L + +L +P +++E V IA Sbjct: 55 ARKLTLEWYISHFIEDR---DKLDSWLYVLLLMSLYQLQYLDKLPDHAVVNEAVEIAKSH 111 Query: 138 FYGDEPKFINAVLDKVSRK 156 G K +NAVL ++ R+ Sbjct: 112 KKG-SEKLVNAVLRRILRE 129 >gi|88856227|ref|ZP_01130887.1| putative RNA-binding Sun protein [marine actinobacterium PHSC20C1] gi|88814546|gb|EAR24408.1| putative RNA-binding Sun protein [marine actinobacterium PHSC20C1] Length = 454 Score = 67.0 bits (163), Expect = 7e-10, Method: Composition-based stats. Identities = 24/137 (17%), Positives = 48/137 (35%), Gaps = 14/137 (10%) Query: 19 ARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMD 78 AR A+ + + E + Y + D + +G + Sbjct: 7 ARRVALDVIM-----------AVRESDAYANLLLPVHLDRAKLSPADAGLATELTYGTLR 55 Query: 79 RKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFF 138 + + D +I+ S++D + +LR +L+ VP + E V +A Sbjct: 56 MQGYYDAVIAQA--AGRPVSKIDPPVLDVLRLATHQLLSMR-VPSHAAVDESVRLAKTIG 112 Query: 139 YGDEPKFINAVLDKVSR 155 F+NAVL +++ Sbjct: 113 TRSAVGFVNAVLRAITQ 129 >gi|321310948|ref|YP_004193277.1| transcription termination factor N-utilization substance protein B [Mycoplasma haemofelis str. Langford 1] gi|319802792|emb|CBY93438.1| transcription termination factor N-utilization substance protein B [Mycoplasma haemofelis str. Langford 1] Length = 136 Score = 67.0 bits (163), Expect = 8e-10, Method: Composition-based stats. Identities = 33/141 (23%), Positives = 62/141 (43%), Gaps = 17/141 (12%) Query: 20 RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79 R++ VQ +Y E+I++ + + + D + + + I +D Sbjct: 12 RVSVVQVIYS---------ELIADQDFSKLDLSDQRDNWTDFEN-------KIFDNYLDN 55 Query: 80 KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139 KQ +I S L WS RL+ + SIL + E P++V+I+E V A ++ Sbjct: 56 KQRYISVIESYLNADWSLERLNTLCASILLEAISEF-HVLKTPIKVLITESVKTAKNYCD 114 Query: 140 GDEPKFINAVLDKVSRKEEIK 160 +E + +N VL+ + E + Sbjct: 115 ENEYRIVNRVLEDFLKNEAVN 135 >gi|226226029|ref|YP_002760135.1| putative rRNA methyltransferase [Gemmatimonas aurantiaca T-27] gi|226089220|dbj|BAH37665.1| putative rRNA methyltransferase [Gemmatimonas aurantiaca T-27] Length = 428 Score = 67.0 bits (163), Expect = 8e-10, Method: Composition-based stats. Identities = 24/92 (26%), Positives = 44/92 (47%), Gaps = 2/92 (2%) Query: 65 DLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVE 124 D W + ++ GV+ ++ +D ++++ + S LD + ILR G +L+ SVP Sbjct: 22 DRRWVQELVWGVLRHRERLDAILATRIRGGLSV--LDDGVLDILRLGTYQLLSMDSVPPY 79 Query: 125 VIISEYVCIAHDFFYGDEPKFINAVLDKVSRK 156 I + V K +NAVL ++ R+ Sbjct: 80 AAIGQSVEAVKRKHGIGAGKLVNAVLRRIDRE 111 >gi|307708280|ref|ZP_07644747.1| ribosomal RNA small subunit methyltransferase B [Streptococcus mitis NCTC 12261] gi|307615726|gb|EFN94932.1| ribosomal RNA small subunit methyltransferase B [Streptococcus mitis NCTC 12261] Length = 437 Score = 67.0 bits (163), Expect = 8e-10, Method: Composition-based stats. Identities = 29/139 (20%), Positives = 55/139 (39%), Gaps = 15/139 (10%) Query: 18 IARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVM 77 AR A+ L E + + Y A + S D +++G + Sbjct: 6 TARSLALAVL-----------EDVFINQAYSNIALNKHFKGSQLSAADKGLVTELVYGTV 54 Query: 78 DRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDF 137 RK ++ +S + ++ +LD L +L +L +P +++E V +A Sbjct: 55 ARKLTLEWYLSHFIEDR---DQLDSWLYVLLLMSAYQLRYLDKIPDHAVVNEAVELAKVR 111 Query: 138 FYGDEPKFINAVLDKVSRK 156 G K +NAVL ++ R+ Sbjct: 112 KKG-SEKLVNAVLRRILRE 129 >gi|86609413|ref|YP_478175.1| ribosomal RNA small subunit methyltransferase B [Synechococcus sp. JA-2-3B'a(2-13)] gi|86557955|gb|ABD02912.1| ribosomal RNA small subunit methyltransferase B [Synechococcus sp. JA-2-3B'a(2-13)] Length = 457 Score = 67.0 bits (163), Expect = 8e-10, Method: Composition-based stats. Identities = 30/138 (21%), Positives = 50/138 (36%), Gaps = 13/138 (9%) Query: 19 ARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMD 78 AR A+ AL + I Y L S + D +++G+ Sbjct: 3 ARQLALLAL-----------QKIERQNAYADLVLGHLLANSSLIPADRHLVSELVYGITR 51 Query: 79 RKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFF 138 R++ +D LI CL ++ + L IL G+ +L +P I V +A Sbjct: 52 RRRTLDALID-CLAQR-PAHKQPPDLRLILHLGLYQLAFLDQIPASAAIHTSVELARQMG 109 Query: 139 YGDEPKFINAVLDKVSRK 156 G +N +L R+ Sbjct: 110 LGSLTGVVNGILRAYQRQ 127 >gi|239932443|ref|ZP_04689396.1| putative Sun-family protein [Streptomyces ghanaensis ATCC 14672] Length = 274 Score = 67.0 bits (163), Expect = 9e-10, Method: Composition-based stats. Identities = 25/138 (18%), Positives = 55/138 (39%), Gaps = 10/138 (7%) Query: 20 RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79 R+ A +AL +D ++ + + D +++G + R Sbjct: 24 RVLAFEALRAVDERDAYANLVLPPLLR-------TAREKGDFDARDAALATELVYGTLRR 76 Query: 80 KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139 + D +I++C+ +D + +L G +L+ +P +S V +A Sbjct: 77 QGTYDAIIAACVDR--PLREVDPPVLDVLSLGAHQLLGTR-IPTHAAVSASVELARVVLG 133 Query: 140 GDEPKFINAVLDKVSRKE 157 KF+NAVL ++++ + Sbjct: 134 DGRAKFVNAVLRRIAQDD 151 >gi|225181330|ref|ZP_03734774.1| sun protein [Dethiobacter alkaliphilus AHT 1] gi|225167911|gb|EEG76718.1| sun protein [Dethiobacter alkaliphilus AHT 1] Length = 451 Score = 67.0 bits (163), Expect = 9e-10, Method: Composition-based stats. Identities = 33/148 (22%), Positives = 54/148 (36%), Gaps = 14/148 (9%) Query: 12 LSHRRGI-ARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFR 70 ++ +R I AR A++ AL + + + Y A E+ D Sbjct: 1 MTRKRKIDAREASLLAL-----------QRVEADDAYVNLALDEVLSSHSLDPRDKRLAA 49 Query: 71 VIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEY 130 I +GV+ K +D LI +LD + ILR G +L VP + Sbjct: 50 EITYGVITYKLTLDWLIEK--VSGRPIKKLDKPIHQILRIGFYQLFYLDRVPPAAAVHAT 107 Query: 131 VCIAHDFFYGDEPKFINAVLDKVSRKEE 158 V + F+N V+ RK++ Sbjct: 108 VELVKKGKKRGLAPFVNGVMRGALRKKD 135 >gi|284928897|ref|YP_003421419.1| ribosomal RNA small subunit methyltransferase RsmB [cyanobacterium UCYN-A] gi|284809356|gb|ADB95061.1| ribosomal RNA small subunit methyltransferase RsmB [cyanobacterium UCYN-A] Length = 453 Score = 67.0 bits (163), Expect = 9e-10, Method: Composition-based stats. Identities = 32/154 (20%), Positives = 63/154 (40%), Gaps = 20/154 (12%) Query: 10 LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF 69 +K+S+ AR ++ L +ID + + + D Sbjct: 1 MKVSN----ARQLVLKILREIDKNNSFINISLDSAFKHNELS-----------RQDRGLC 45 Query: 70 RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISE 129 +++G++ ++ +D LI L K S + +L IL G+ +L+ VP+ ++ Sbjct: 46 TELVYGIIRCQRTLDSLIDQ-LGNKKSQKQ-SPVLRRILHIGLYQLLYLDHVPLSAAVNT 103 Query: 130 YVCIAHDFFYGDEPKFINAVLD---KVSRKEEIK 160 V +A + K +NA+L +V +KE K Sbjct: 104 SVDLAKNNNLNVLSKVVNAILREYIRVKKKENCK 137 >gi|303258671|ref|ZP_07344651.1| rRNA methyltransferase RsmB [Streptococcus pneumoniae SP-BS293] gi|303266637|ref|ZP_07352521.1| rRNA methyltransferase RsmB [Streptococcus pneumoniae BS457] gi|303268527|ref|ZP_07354320.1| rRNA methyltransferase RsmB [Streptococcus pneumoniae BS458] gi|302640172|gb|EFL70627.1| rRNA methyltransferase RsmB [Streptococcus pneumoniae SP-BS293] gi|302641922|gb|EFL72276.1| rRNA methyltransferase RsmB [Streptococcus pneumoniae BS458] gi|302643799|gb|EFL74062.1| rRNA methyltransferase RsmB [Streptococcus pneumoniae BS457] Length = 437 Score = 66.7 bits (162), Expect = 1e-09, Method: Composition-based stats. Identities = 33/157 (21%), Positives = 60/157 (38%), Gaps = 20/157 (12%) Query: 18 IARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVM 77 AR A+ L E + + Y A + S D +++G + Sbjct: 6 TARSLALAVL-----------EDVFVNQAYSNIALNKHLKGSQLSAADKGLVTELVYGTV 54 Query: 78 DRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDF 137 RK ++ +S + ++ +LD L +L V +L +P +++E V +A Sbjct: 55 ARKLTLEWYLSHFIEDR---DQLDSWLYVLLLMSVYQLRYLDKIPDHAVVNEAVELAK-L 110 Query: 138 FYGDEPKFINAVLDKVSRK-----EEIKRSGCVSAIT 169 K +NAVL ++ R+ IKR +I Sbjct: 111 RKKGSEKLVNAVLRRILREGWPDIANIKRKNKRDSIA 147 >gi|303261834|ref|ZP_07347780.1| rRNA methyltransferase RsmB [Streptococcus pneumoniae SP14-BS292] gi|303263697|ref|ZP_07349619.1| rRNA methyltransferase RsmB [Streptococcus pneumoniae BS397] gi|302636917|gb|EFL67406.1| rRNA methyltransferase RsmB [Streptococcus pneumoniae SP14-BS292] gi|302646735|gb|EFL76960.1| rRNA methyltransferase RsmB [Streptococcus pneumoniae BS397] Length = 438 Score = 66.7 bits (162), Expect = 1e-09, Method: Composition-based stats. Identities = 33/157 (21%), Positives = 60/157 (38%), Gaps = 20/157 (12%) Query: 18 IARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVM 77 AR A+ L E + + Y A + S D +++G + Sbjct: 7 TARSLALAVL-----------EDVFVNQAYSNIALNKHLKGSQLSAADKGLVTELVYGTV 55 Query: 78 DRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDF 137 RK ++ +S + ++ +LD L +L V +L +P +++E V +A Sbjct: 56 ARKLTLEWYLSHFIEDR---DQLDSWLYVLLLMSVYQLRYLDKIPDHAVVNEAVELAK-L 111 Query: 138 FYGDEPKFINAVLDKVSRK-----EEIKRSGCVSAIT 169 K +NAVL ++ R+ IKR +I Sbjct: 112 RKKGSEKLVNAVLRRILREGWPDIANIKRKNKRDSIA 148 >gi|255636077|gb|ACU18383.1| unknown [Glycine max] Length = 289 Score = 66.7 bits (162), Expect = 1e-09, Method: Composition-based stats. Identities = 35/193 (18%), Positives = 61/193 (31%), Gaps = 48/193 (24%) Query: 17 GIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVES----------------- 59 AR A+ +Y + G + + R A + + E Sbjct: 94 RAARELALSIIYAACLEGMDPVRLFEKRMNARREAGYKFNEERLLEYNHMSFGGPPVTVG 153 Query: 60 -----------------------------VYLHVDLEWFRVIIHGVMDRKQHIDLLISSC 90 VY + L + + ++ V D L+I+ Sbjct: 154 SDEEANELLRHIEEESAIEAEVLTAPPKLVYNKLILRFTKKLLVAVRDTWDSHVLVINKI 213 Query: 91 LTEKWSFSRLDMI-LCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAV 149 + W I SIL + E+ E +++I+E V +A F G P+ IN Sbjct: 214 APQNWKNEPAAKILELSILHLAMSEM-EVLETRHQIVINEAVDLAKRFCDGAAPRIINGC 272 Query: 150 LDKVSRKEEIKRS 162 L R+ E++ S Sbjct: 273 LRTFFRELELEAS 285 >gi|296129702|ref|YP_003636952.1| Fmu (Sun) domain protein [Cellulomonas flavigena DSM 20109] gi|296021517|gb|ADG74753.1| Fmu (Sun) domain protein [Cellulomonas flavigena DSM 20109] Length = 509 Score = 66.7 bits (162), Expect = 1e-09, Method: Composition-based stats. Identities = 26/121 (21%), Positives = 50/121 (41%), Gaps = 3/121 (2%) Query: 36 STTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKW 95 T ++E E Y L E D + + +G + + D +++ + Sbjct: 55 DTLRAVAESEAYANLVLPPLLRERGLAGRDAAFATELAYGTLRLRGRYDAVLAQASSR-- 112 Query: 96 SFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSR 155 +D + +LR G +L+ VP +SE V +A + +F+NAVL +V+ Sbjct: 113 PLDEVDPPVLDVLRLGAHQLLGMR-VPAHAAVSETVGLARERVGAGAAQFVNAVLRRVAE 171 Query: 156 K 156 + Sbjct: 172 R 172 >gi|150021390|ref|YP_001306744.1| NusB/RsmB/TIM44 [Thermosipho melanesiensis BI429] gi|149793911|gb|ABR31359.1| NusB/RsmB/TIM44 [Thermosipho melanesiensis BI429] Length = 416 Score = 66.7 bits (162), Expect = 1e-09, Method: Composition-based stats. Identities = 22/93 (23%), Positives = 49/93 (52%), Gaps = 12/93 (12%) Query: 65 DLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVE 124 + +F+ +I GV+ +++++D +I+S L +K + + +ILR G +L+ + Sbjct: 34 EKAFFKNLIFGVLRKQEYLDWVINSLLKKK----DIPPSIRTILRIGTYQLLFTNKPSYS 89 Query: 125 VIISEYVCIA--HDFFYGDEPKFINAVLDKVSR 155 ++ +E V + F +NA+L K+S+ Sbjct: 90 IV-NETVELVEKKSF-----KGLVNAILRKISK 116 >gi|303254346|ref|ZP_07340454.1| rRNA methyltransferase RsmB [Streptococcus pneumoniae BS455] gi|301802435|emb|CBW35190.1| putative ribosomal RNA small subunit methyltransferase [Streptococcus pneumoniae INV200] gi|302598697|gb|EFL65735.1| rRNA methyltransferase RsmB [Streptococcus pneumoniae BS455] Length = 437 Score = 66.7 bits (162), Expect = 1e-09, Method: Composition-based stats. Identities = 33/157 (21%), Positives = 60/157 (38%), Gaps = 20/157 (12%) Query: 18 IARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVM 77 AR A+ L E + + Y A + S D +++G + Sbjct: 6 TARSLALAVL-----------EDVFVNQAYSNIALNKHLKGSQLSAADKGLVTELVYGTV 54 Query: 78 DRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDF 137 RK ++ +S + ++ +LD L +L V +L +P +++E V +A Sbjct: 55 ARKLTLEWYLSHFIEDR---DQLDSWLYVLLLMSVYQLRYLDKIPDHAVVNEAVELAK-L 110 Query: 138 FYGDEPKFINAVLDKVSRK-----EEIKRSGCVSAIT 169 K +NAVL ++ R+ IKR +I Sbjct: 111 RKKGSEKLVNAVLRRILREGWPDIANIKRKNKRDSIA 147 >gi|182684677|ref|YP_001836424.1| rRNA methyltransferase RsmB [Streptococcus pneumoniae CGSP14] gi|182630011|gb|ACB90959.1| rRNA methyltransferase RsmB [Streptococcus pneumoniae CGSP14] Length = 438 Score = 66.7 bits (162), Expect = 1e-09, Method: Composition-based stats. Identities = 33/157 (21%), Positives = 60/157 (38%), Gaps = 20/157 (12%) Query: 18 IARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVM 77 AR A+ L E + + Y A + S D +++G + Sbjct: 7 TARSLALAVL-----------EDVFVNQAYSNIALNKHLKGSQLSAADKGLVTELVYGTV 55 Query: 78 DRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDF 137 RK ++ +S + ++ +LD L +L V +L +P +++E V +A Sbjct: 56 ARKLTLEWYLSHFIEDR---DQLDSWLYVLLLMSVYQLRYLDKIPDHAVVNEAVELAK-L 111 Query: 138 FYGDEPKFINAVLDKVSRK-----EEIKRSGCVSAIT 169 K +NAVL ++ R+ IKR +I Sbjct: 112 RKKGSEKLVNAVLRRILREGWPDIANIKRKNKRDSIA 148 >gi|225857347|ref|YP_002738858.1| ribosomal RNA small subunit methyltransferase B [Streptococcus pneumoniae P1031] gi|225726221|gb|ACO22073.1| ribosomal RNA small subunit methyltransferase B [Streptococcus pneumoniae P1031] Length = 437 Score = 66.7 bits (162), Expect = 1e-09, Method: Composition-based stats. Identities = 33/157 (21%), Positives = 60/157 (38%), Gaps = 20/157 (12%) Query: 18 IARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVM 77 AR A+ L E + + Y A + S D +++G + Sbjct: 6 TARSLALAVL-----------EDVFVNQAYSNIALNKHLKGSQLSAADKGLVTELVYGTV 54 Query: 78 DRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDF 137 RK ++ +S + ++ +LD L +L V +L +P +++E V +A Sbjct: 55 ARKLTLEWYLSHFIEDR---DQLDSWLYVLLLMSVYQLRYLDKIPDHAVVNEAVELAK-L 110 Query: 138 FYGDEPKFINAVLDKVSRK-----EEIKRSGCVSAIT 169 K +NAVL ++ R+ IKR +I Sbjct: 111 RKKGSEKLVNAVLRRILREGWPDIANIKRKNKRDSIA 147 >gi|209524134|ref|ZP_03272685.1| sun protein [Arthrospira maxima CS-328] gi|209495509|gb|EDZ95813.1| sun protein [Arthrospira maxima CS-328] Length = 458 Score = 66.7 bits (162), Expect = 1e-09, Method: Composition-based stats. Identities = 27/143 (18%), Positives = 48/143 (33%), Gaps = 13/143 (9%) Query: 20 RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79 R A L I G ++ E D D +++G R Sbjct: 6 RQLAFVTLRDIQRRGAFADLVLDEKLRQADLKD-----------ADRRLGTELVYGCTRR 54 Query: 80 KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139 ++ +D +I L +K + L IL G+ +L ++P ++ V + Sbjct: 55 RRTLDAIIDR-LAKK-PAHQQPPDLRIILHLGLYQLSFSTNIPPSAAVNTTVDLTKVNHL 112 Query: 140 GDEPKFINAVLDKVSRKEEIKRS 162 F+N +L + R E S Sbjct: 113 SGLGGFVNGLLRQYLRLLEAGNS 135 >gi|149011398|ref|ZP_01832645.1| rRNA methyltransferase RsmB [Streptococcus pneumoniae SP19-BS75] gi|147764388|gb|EDK71319.1| rRNA methyltransferase RsmB [Streptococcus pneumoniae SP19-BS75] Length = 438 Score = 66.7 bits (162), Expect = 1e-09, Method: Composition-based stats. Identities = 29/139 (20%), Positives = 55/139 (39%), Gaps = 15/139 (10%) Query: 18 IARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVM 77 AR A+ L E + + Y A + S L D +++G + Sbjct: 7 TARSLALAVL-----------EDVFVNQAYSNIALNKHLKGSQLLAADKGLVTELVYGTV 55 Query: 78 DRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDF 137 RK ++ +S + ++ +LD L +L +L +P +++E V +A Sbjct: 56 ARKLTLEWYLSHFIEDR---DQLDSWLYVLLLMSAYQLRYLDKIPDHAVVNEAVELAK-L 111 Query: 138 FYGDEPKFINAVLDKVSRK 156 K +NAVL ++ R+ Sbjct: 112 RKKGSEKLVNAVLRRILRE 130 >gi|222099955|ref|YP_002534523.1| Sun protein [Thermotoga neapolitana DSM 4359] gi|221572345|gb|ACM23157.1| Sun protein [Thermotoga neapolitana DSM 4359] Length = 431 Score = 66.7 bits (162), Expect = 1e-09, Method: Composition-based stats. Identities = 30/115 (26%), Positives = 54/115 (46%), Gaps = 8/115 (6%) Query: 40 IISEYETYRFCADTELD-VESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFS 98 ++ +YE +F ++D V SV D + + ++ GVM +++ +D I+ L Sbjct: 12 LLRKYEKEKFLDREDVDSVLSVLNDRDRRFLKELVWGVMRKEELLDWYINQLLRNP---- 67 Query: 99 RLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKV 153 + + LR GV +L+ VP +SE V + + K +NAVL +V Sbjct: 68 DIPPAVRVALRMGVYQLLFMDGVPDYAAVSETVKLVK---NENFKKLVNAVLRRV 119 >gi|193216567|ref|YP_001999809.1| transcription termination factor [Mycoplasma arthritidis 158L3-1] gi|193001890|gb|ACF07105.1| transcription termination factor [Mycoplasma arthritidis 158L3-1] Length = 148 Score = 66.7 bits (162), Expect = 1e-09, Method: Composition-based stats. Identities = 30/149 (20%), Positives = 57/149 (38%), Gaps = 20/149 (13%) Query: 29 QIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLL-- 86 Q D + ++ +Y E +D+ + + K+ +D L Sbjct: 6 QKDQTQKKSVFLLKKYNERVKLITFIYQSELFEEKIDVNY---LFEHFDLSKRELDSLTI 62 Query: 87 ISSCLT-----------EKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135 IS E+W++ R+ + +I+ G+ EL +V+I+E V IA Sbjct: 63 ISEKYDLFQSIAKRSILEQWTWQRIQPLARAIIIYGIFELFFNS---PKVVINEMVNIAK 119 Query: 136 DFFYGDE-PKFINAVLDKVSRKEEIKRSG 163 F D KF+N LD +++ + + Sbjct: 120 SFIPDDSTYKFVNRTLDMIAKSPQFAKEA 148 >gi|300214410|gb|ADJ78826.1| 16S ribosomal RNA m(5)C 967 methyltransferase [Lactobacillus salivarius CECT 5713] Length = 445 Score = 66.3 bits (161), Expect = 1e-09, Method: Composition-based stats. Identities = 27/142 (19%), Positives = 60/142 (42%), Gaps = 14/142 (9%) Query: 15 RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74 + RL AV+ L T + S+ TY A ++ E+ + D + I++ Sbjct: 2 KNKTVRLLAVELL----------TRVESQ-GTYSNLALNKVIEENNFSVKDTKLLTTIVY 50 Query: 75 GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134 GV+ K ++ + + + ++L + + +L + +++ +P + +E + IA Sbjct: 51 GVIQHKLTLEYWLEPFIKKA---NKLQLWVKELLLVSLYQMVYLDKIPDRAVFNESIEIA 107 Query: 135 HDFFYGDEPKFINAVLDKVSRK 156 + KF+ VL + R Sbjct: 108 KIKGHTGIRKFVTGVLHSIRRN 129 >gi|225021364|ref|ZP_03710556.1| hypothetical protein CORMATOL_01383 [Corynebacterium matruchotii ATCC 33806] gi|305681148|ref|ZP_07403955.1| putative ribosomal RNA small subunit methyltransferase B [Corynebacterium matruchotii ATCC 14266] gi|224945746|gb|EEG26955.1| hypothetical protein CORMATOL_01383 [Corynebacterium matruchotii ATCC 33806] gi|305659353|gb|EFM48853.1| putative ribosomal RNA small subunit methyltransferase B [Corynebacterium matruchotii ATCC 14266] Length = 491 Score = 66.3 bits (161), Expect = 1e-09, Method: Composition-based stats. Identities = 27/138 (19%), Positives = 51/138 (36%), Gaps = 14/138 (10%) Query: 18 IARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVM 77 +AR A LY++++ G + + T E D + I +G + Sbjct: 49 LARAVAFDVLYRVNVEGTYANLALPKALT-----------EYRLKRRDAAFATEITYGTL 97 Query: 78 DRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDF 137 + +D++I+ C + +D + +R G +L+ P + V I Sbjct: 98 RVQGILDIVIAHCSSR--PLDSIDPAVLGAIRLGAYQLLYTRVEPHA-AVDSAVKIVAAT 154 Query: 138 FYGDEPKFINAVLDKVSR 155 F N +L K+SR Sbjct: 155 GNEQAKGFANGILRKISR 172 >gi|183603536|ref|ZP_02717787.2| ribosomal RNA small subunit methyltransferase B [Streptococcus pneumoniae CDC3059-06] gi|183576422|gb|EDT96950.1| ribosomal RNA small subunit methyltransferase B [Streptococcus pneumoniae CDC3059-06] Length = 437 Score = 66.3 bits (161), Expect = 1e-09, Method: Composition-based stats. Identities = 29/139 (20%), Positives = 55/139 (39%), Gaps = 15/139 (10%) Query: 18 IARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVM 77 AR A+ L E + + Y A + S L D +++G + Sbjct: 6 TARSLALAVL-----------EDVFVNQAYSNIALNKHLKGSQLLAADKGLVTELVYGTV 54 Query: 78 DRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDF 137 RK ++ +S + ++ +LD L +L +L +P +++E V +A Sbjct: 55 ARKLTLEWYLSHFIEDR---DQLDSWLYVLLLMSAYQLRYLDKIPDHAVVNEAVELAK-L 110 Query: 138 FYGDEPKFINAVLDKVSRK 156 K +NAVL ++ R+ Sbjct: 111 RKKGSEKLVNAVLRRILRE 129 >gi|15901566|ref|NP_346170.1| rRNA methyltransferase RsmB [Streptococcus pneumoniae TIGR4] gi|237649147|ref|ZP_04523399.1| rRNA methyltransferase RsmB [Streptococcus pneumoniae CCRI 1974] gi|237820737|ref|ZP_04596582.1| rRNA methyltransferase RsmB [Streptococcus pneumoniae CCRI 1974M2] gi|14973229|gb|AAK75810.1| rRNA methyltransferase RsmB [Streptococcus pneumoniae TIGR4] gi|332074074|gb|EGI84552.1| ribosomal RNA small subunit methyltransferase B [Streptococcus pneumoniae GA41301] gi|332201157|gb|EGJ15228.1| ribosomal RNA small subunit methyltransferase B [Streptococcus pneumoniae GA47901] Length = 437 Score = 66.3 bits (161), Expect = 1e-09, Method: Composition-based stats. Identities = 29/139 (20%), Positives = 55/139 (39%), Gaps = 15/139 (10%) Query: 18 IARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVM 77 AR A+ L E + + Y A + S L D +++G + Sbjct: 6 TARSLALAVL-----------EDVFVNQAYSNIALNKHLKGSQLLAADKGLVTELVYGTV 54 Query: 78 DRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDF 137 RK ++ +S + ++ +LD L +L +L +P +++E V +A Sbjct: 55 ARKLTLEWYLSHFIEDR---DQLDSWLYVLLLMSAYQLRYLDKIPDHAVVNEAVELAK-L 110 Query: 138 FYGDEPKFINAVLDKVSRK 156 K +NAVL ++ R+ Sbjct: 111 RKKGSEKLVNAVLRRILRE 129 >gi|111657689|ref|ZP_01408417.1| hypothetical protein SpneT_02001123 [Streptococcus pneumoniae TIGR4] gi|149002037|ref|ZP_01826991.1| hypothetical protein CGSSp14BS69_10011 [Streptococcus pneumoniae SP14-BS69] gi|147759846|gb|EDK66836.1| hypothetical protein CGSSp14BS69_10011 [Streptococcus pneumoniae SP14-BS69] Length = 438 Score = 66.3 bits (161), Expect = 1e-09, Method: Composition-based stats. Identities = 29/139 (20%), Positives = 55/139 (39%), Gaps = 15/139 (10%) Query: 18 IARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVM 77 AR A+ L E + + Y A + S L D +++G + Sbjct: 7 TARSLALAVL-----------EDVFVNQAYSNIALNKHLKGSQLLAADKGLVTELVYGTV 55 Query: 78 DRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDF 137 RK ++ +S + ++ +LD L +L +L +P +++E V +A Sbjct: 56 ARKLTLEWYLSHFIEDR---DQLDSWLYVLLLMSAYQLRYLDKIPDHAVVNEAVELAK-L 111 Query: 138 FYGDEPKFINAVLDKVSRK 156 K +NAVL ++ R+ Sbjct: 112 RKKGSEKLVNAVLRRILRE 130 >gi|148997789|ref|ZP_01825353.1| hypothetical protein CGSSp11BS70_02739 [Streptococcus pneumoniae SP11-BS70] gi|147756288|gb|EDK63330.1| hypothetical protein CGSSp11BS70_02739 [Streptococcus pneumoniae SP11-BS70] Length = 438 Score = 66.3 bits (161), Expect = 1e-09, Method: Composition-based stats. Identities = 28/139 (20%), Positives = 54/139 (38%), Gaps = 15/139 (10%) Query: 18 IARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVM 77 AR A+ L E + + Y A + S D +++G + Sbjct: 7 TARSLALAVL-----------EDVFVNQAYSNIALNKHLKGSQLSAADKGLVTELVYGTV 55 Query: 78 DRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDF 137 RK ++ +S + ++ +LD L +L +L +P +++E V +A Sbjct: 56 ARKLTLEWYLSHFIEDR---DQLDSWLYVLLLMSAYQLRYLDKIPDHAVVNEAVELAK-L 111 Query: 138 FYGDEPKFINAVLDKVSRK 156 K +NAVL ++ R+ Sbjct: 112 RKKGSEKLVNAVLRRILRE 130 >gi|168575074|ref|ZP_02721037.1| ribosomal RNA small subunit methyltransferase B [Streptococcus pneumoniae MLV-016] gi|307068359|ref|YP_003877325.1| tRNA and rRNA cytosine-C5-methylase [Streptococcus pneumoniae AP200] gi|183578893|gb|EDT99421.1| ribosomal RNA small subunit methyltransferase B [Streptococcus pneumoniae MLV-016] gi|306409896|gb|ADM85323.1| tRNA and rRNA cytosine-C5-methylase [Streptococcus pneumoniae AP200] Length = 437 Score = 66.3 bits (161), Expect = 1e-09, Method: Composition-based stats. Identities = 28/139 (20%), Positives = 54/139 (38%), Gaps = 15/139 (10%) Query: 18 IARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVM 77 AR A+ L E + + Y A + S D +++G + Sbjct: 6 TARSLALAVL-----------EDVFVNQAYSNIALNKHLKGSQLSAADKGLVTELVYGTV 54 Query: 78 DRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDF 137 RK ++ +S + ++ +LD L +L +L +P +++E V +A Sbjct: 55 ARKLTLEWYLSHFIEDR---DQLDSWLYVLLLMSAYQLRYLDKIPDHAVVNEAVELAK-L 110 Query: 138 FYGDEPKFINAVLDKVSRK 156 K +NAVL ++ R+ Sbjct: 111 RKKGSEKLVNAVLRRILRE 129 >gi|29840529|ref|NP_829635.1| transcription antitermination protein NusB [Chlamydophila caviae GPIC] gi|29834878|gb|AAP05513.1| N utilization substance protein B, putative [Chlamydophila caviae GPIC] Length = 165 Score = 66.3 bits (161), Expect = 1e-09, Method: Composition-based stats. Identities = 26/140 (18%), Positives = 57/140 (40%), Gaps = 12/140 (8%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 + R +Q LY + + ++ + E V + L + + I+ Sbjct: 22 KQKMREIVLQMLYALGMDPSCEESLVPLLMS-------ETAVTQRHAFTALSFSKEIL-- 72 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135 + +DLLI+ + S +L ++ ++LR + E + ++I+E + Sbjct: 73 --AKSSELDLLIAQT-VKNTSLEKLTLMEKNVLRLTLFEHFHGQPINTAILIAEATRLVK 129 Query: 136 DFFYGDEPKFINAVLDKVSR 155 F Y + F++AVL+ + R Sbjct: 130 KFSYIEACTFVHAVLNDIFR 149 >gi|168491383|ref|ZP_02715526.1| ribosomal RNA small subunit methyltransferase B [Streptococcus pneumoniae CDC0288-04] gi|183574228|gb|EDT94756.1| ribosomal RNA small subunit methyltransferase B [Streptococcus pneumoniae CDC0288-04] Length = 437 Score = 66.3 bits (161), Expect = 1e-09, Method: Composition-based stats. Identities = 28/139 (20%), Positives = 54/139 (38%), Gaps = 15/139 (10%) Query: 18 IARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVM 77 AR A+ L E + + Y A + S D +++G + Sbjct: 6 TARSLALAVL-----------EDVFVNQAYSNIALNKHLKGSQLSAADKGLVTELVYGTV 54 Query: 78 DRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDF 137 RK ++ +S + ++ +LD L +L +L +P +++E V +A Sbjct: 55 ARKLTLEWYLSHFIEDR---DQLDNWLYVLLLMSAYQLRYLDKIPDHAVVNEAVELAK-L 110 Query: 138 FYGDEPKFINAVLDKVSRK 156 K +NAVL ++ R+ Sbjct: 111 RKKGSEKLVNAVLRRILRE 129 >gi|116517030|ref|YP_816997.1| ribosomal RNA small subunit methyltransferase B [Streptococcus pneumoniae D39] gi|148984178|ref|ZP_01817473.1| hypothetical protein CGSSp3BS71_03117 [Streptococcus pneumoniae SP3-BS71] gi|116077606|gb|ABJ55326.1| ribosomal RNA small subunit methyltransferase B [Streptococcus pneumoniae D39] gi|147923467|gb|EDK74580.1| hypothetical protein CGSSp3BS71_03117 [Streptococcus pneumoniae SP3-BS71] gi|301800539|emb|CBW33179.1| putative ribosomal RNA small subunit methyltransferase [Streptococcus pneumoniae OXC141] Length = 437 Score = 66.3 bits (161), Expect = 1e-09, Method: Composition-based stats. Identities = 28/140 (20%), Positives = 55/140 (39%), Gaps = 15/140 (10%) Query: 18 IARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVM 77 AR A+ L E + + Y A + S D +++G + Sbjct: 6 TARSLALAVL-----------EDVFVNQAYSNIALNKHLKGSQLSAADKGLVTELVYGTV 54 Query: 78 DRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDF 137 RK ++ +S + ++ +LD L +L +L +P +++E V +A Sbjct: 55 ARKLTLEWYLSHFIEDR---DQLDSWLYVLLLMSAYQLRYLDKIPDHAVVNEAVELAK-L 110 Query: 138 FYGDEPKFINAVLDKVSRKE 157 K +NAVL ++ R++ Sbjct: 111 RKKGSEKLVNAVLRRILRED 130 >gi|15903621|ref|NP_359171.1| rRNA methylase [Streptococcus pneumoniae R6] gi|15459245|gb|AAL00382.1| rRNA methylase [Streptococcus pneumoniae R6] Length = 438 Score = 66.3 bits (161), Expect = 1e-09, Method: Composition-based stats. Identities = 28/140 (20%), Positives = 55/140 (39%), Gaps = 15/140 (10%) Query: 18 IARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVM 77 AR A+ L E + + Y A + S D +++G + Sbjct: 7 TARSLALAVL-----------EDVFVNQAYSNIALNKHLKGSQLSAADKGLVTELVYGTV 55 Query: 78 DRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDF 137 RK ++ +S + ++ +LD L +L +L +P +++E V +A Sbjct: 56 ARKLTLEWYLSHFIEDR---DQLDSWLYVLLLMSAYQLRYLDKIPDHAVVNEAVELAK-L 111 Query: 138 FYGDEPKFINAVLDKVSRKE 157 K +NAVL ++ R++ Sbjct: 112 RKKGSEKLVNAVLRRILRED 131 >gi|302380559|ref|ZP_07269024.1| putative ribosomal RNA small subunit methyltransferase B [Finegoldia magna ACS-171-V-Col3] gi|302311502|gb|EFK93518.1| putative ribosomal RNA small subunit methyltransferase B [Finegoldia magna ACS-171-V-Col3] Length = 423 Score = 66.3 bits (161), Expect = 1e-09, Method: Composition-based stats. Identities = 24/97 (24%), Positives = 42/97 (43%), Gaps = 5/97 (5%) Query: 59 SVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIEC 118 D+ + + + ++ + ID +IS C +RLD I+ ILR E++ Sbjct: 31 GDLDKRDIAYIKKCVFTEIENRFFIDYVISKC--SDLEINRLDKIVLEILRMATTEILFM 88 Query: 119 HSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSR 155 + V+ E V +A ++NAVL +V R Sbjct: 89 KTADYAVV-DEAVELAS--SITRYKDYVNAVLREVCR 122 >gi|330832248|ref|YP_004401073.1| tRNA and rRNA cytosine-C5-methylase [Streptococcus suis ST3] gi|329306471|gb|AEB80887.1| tRNA and rRNA cytosine-C5-methylase [Streptococcus suis ST3] Length = 436 Score = 66.3 bits (161), Expect = 1e-09, Method: Composition-based stats. Identities = 32/158 (20%), Positives = 65/158 (41%), Gaps = 21/158 (13%) Query: 12 LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71 + ++ AR A+ L E + + Y A + S D Sbjct: 1 MINKHETARSLALSVL-----------EQVFDQGAYSNIALNKALESSRLSAQDKGLATE 49 Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131 +++G + RK ++ ++ + ++ +LD + +L + +L+ +P +++E V Sbjct: 50 LVYGTVSRKITLEWYLAHFIEDR---EKLDTWVYYLLMLSLYQLVYLDKLPTHAVVNEAV 106 Query: 132 CIAHDFFYGDEPKFINAVLDKVS-----RKEEIKRSGC 164 IA D KF+NA+L K+S + +IKR Sbjct: 107 NIAKRKPGTD--KFVNAILRKLSQDSLPKPADIKRKNK 142 >gi|90961592|ref|YP_535508.1| 16S rRNA m(5)C 967 methyltransferase [Lactobacillus salivarius UCC118] gi|301299300|ref|ZP_07205586.1| ribosomal RNA small subunit methyltransferase B [Lactobacillus salivarius ACS-116-V-Col5a] gi|90820786|gb|ABD99425.1| 16S rRNA m(5)C 967 methyltransferase [Lactobacillus salivarius UCC118] gi|300853144|gb|EFK80742.1| ribosomal RNA small subunit methyltransferase B [Lactobacillus salivarius ACS-116-V-Col5a] Length = 445 Score = 66.3 bits (161), Expect = 1e-09, Method: Composition-based stats. Identities = 27/142 (19%), Positives = 60/142 (42%), Gaps = 14/142 (9%) Query: 15 RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74 + RL AV+ L T + S+ TY A ++ E+ + D + I++ Sbjct: 2 KNKTVRLLAVELL----------TRVESQ-GTYSNLALNKVIEENNFSVKDTKLLTTIVY 50 Query: 75 GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134 GV+ K ++ + + + ++L + + +L + +++ +P + +E + IA Sbjct: 51 GVIQHKLTLEYWLEPFIKKA---NKLQLWVKELLLVSLYQMVYLDKIPDRAVFNESIEIA 107 Query: 135 HDFFYGDEPKFINAVLDKVSRK 156 + KF+ VL + R Sbjct: 108 KIKGHTGIRKFVTGVLHSIRRN 129 >gi|327441110|dbj|BAK17475.1| tRNA and rRNA cytosine-C5-methylase [Solibacillus silvestris StLB046] Length = 453 Score = 66.3 bits (161), Expect = 1e-09, Method: Composition-based stats. Identities = 16/92 (17%), Positives = 37/92 (40%), Gaps = 5/92 (5%) Query: 65 DLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVE 124 D + +G + K +D + + K +D+ + +LR + ++ +P Sbjct: 48 DRGLLTELTYGTLQHKLTLDYYLEPFIRGK-----VDIWVRWLLRMSLYQMQYLTRIPAH 102 Query: 125 VIISEYVCIAHDFFYGDEPKFINAVLDKVSRK 156 ++E V IA + +N +L + R+ Sbjct: 103 AAVNEAVEIAKRRGHKGIASMVNGILRSILRE 134 >gi|303233972|ref|ZP_07320621.1| putative ribosomal RNA small subunit methyltransferase B [Finegoldia magna BVS033A4] gi|302494897|gb|EFL54654.1| putative ribosomal RNA small subunit methyltransferase B [Finegoldia magna BVS033A4] Length = 423 Score = 66.3 bits (161), Expect = 1e-09, Method: Composition-based stats. Identities = 24/97 (24%), Positives = 42/97 (43%), Gaps = 5/97 (5%) Query: 59 SVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIEC 118 D+ + + + ++ + ID +IS C +RLD I+ ILR E++ Sbjct: 31 GDLDKRDIAYIKKCVFTEIENRFFIDYVISKC--SDLEINRLDKIVLEILRMATTEILFM 88 Query: 119 HSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSR 155 + V+ E V +A ++NAVL +V R Sbjct: 89 KTADYAVV-DEAVELAS--SITRYKDYVNAVLREVCR 122 >gi|293364893|ref|ZP_06611610.1| RNA methyltransferase Sun [Streptococcus oralis ATCC 35037] gi|307703146|ref|ZP_07640092.1| ribosomal RNA small subunit methyltransferase B [Streptococcus oralis ATCC 35037] gi|291316343|gb|EFE56779.1| RNA methyltransferase Sun [Streptococcus oralis ATCC 35037] gi|307623221|gb|EFO02212.1| ribosomal RNA small subunit methyltransferase B [Streptococcus oralis ATCC 35037] Length = 437 Score = 66.3 bits (161), Expect = 1e-09, Method: Composition-based stats. Identities = 30/139 (21%), Positives = 56/139 (40%), Gaps = 15/139 (10%) Query: 18 IARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVM 77 AR A+ L E + + Y A + S + D I++G + Sbjct: 6 TARSLALAVL-----------EDVLVNQAYSNIALNKHLKGSQFSAADKGLVTEIVYGTV 54 Query: 78 DRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDF 137 RK ++ +S + ++ +LD L +L +L +P +++E V +A Sbjct: 55 ARKLTLEWYLSHFIQDR---DKLDNWLYILLLLSAYQLRYLDKIPNHAVVNEAVDLAKAR 111 Query: 138 FYGDEPKFINAVLDKVSRK 156 G K +NAVL ++ R+ Sbjct: 112 KKG-SEKLVNAVLRRILRE 129 >gi|199597150|ref|ZP_03210582.1| tRNA and rRNA cytosine-C5-methylase [Lactobacillus rhamnosus HN001] gi|199591954|gb|EDZ00029.1| tRNA and rRNA cytosine-C5-methylase [Lactobacillus rhamnosus HN001] Length = 446 Score = 66.3 bits (161), Expect = 1e-09, Method: Composition-based stats. Identities = 30/150 (20%), Positives = 57/150 (38%), Gaps = 21/150 (14%) Query: 20 RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79 RL AVQ L T ++ + D + + D +++GV+ Sbjct: 7 RLLAVQTL----------TRVMGKGGYSNLTLDHVITKYQLDSR-DAGLLTNVVYGVIQH 55 Query: 80 KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139 + +D L++ + + +LD + +L+ V +L VP + + IA + Sbjct: 56 QLTLDYLLAPFVKNR----QLDTWVRCLLQTAVYQLQYLDKVPARAVFFDSTEIAKKLGH 111 Query: 140 GDEPKFINAVLDKVSRKEEIKRSGCVSAIT 169 KF+ VL + +RSG +T Sbjct: 112 QGVAKFVTGVL------RQAQRSGYPDPMT 135 >gi|332072908|gb|EGI83389.1| ribosomal RNA small subunit methyltransferase B [Streptococcus pneumoniae GA17545] Length = 437 Score = 66.3 bits (161), Expect = 1e-09, Method: Composition-based stats. Identities = 28/139 (20%), Positives = 54/139 (38%), Gaps = 15/139 (10%) Query: 18 IARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVM 77 AR A+ L E + + Y A + S D +++G + Sbjct: 6 TARSLALAVL-----------EDVFVNQAYSNIALNKHLKGSQLSAADKGLVTELVYGTV 54 Query: 78 DRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDF 137 RK ++ +S + ++ +LD L +L +L +P +++E V +A Sbjct: 55 ARKLTLEWYLSHFIEDR---DQLDSWLYVLLLMSAYQLRYLDKIPDHAVVNEAVELAK-L 110 Query: 138 FYGDEPKFINAVLDKVSRK 156 K +NAVL ++ R+ Sbjct: 111 RKKGSEKLVNAVLRRILRE 129 >gi|149006597|ref|ZP_01830296.1| rRNA methylase [Streptococcus pneumoniae SP18-BS74] gi|147761895|gb|EDK68858.1| rRNA methylase [Streptococcus pneumoniae SP18-BS74] Length = 438 Score = 66.3 bits (161), Expect = 1e-09, Method: Composition-based stats. Identities = 28/139 (20%), Positives = 54/139 (38%), Gaps = 15/139 (10%) Query: 18 IARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVM 77 AR A+ L E + + Y A + S D +++G + Sbjct: 7 TARSLALAVL-----------EDVFVNQAYSNIALNKHLKGSQLSAADKGLVTELVYGTV 55 Query: 78 DRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDF 137 RK ++ +S + ++ +LD L +L +L +P +++E V +A Sbjct: 56 ARKLTLEWYLSHFIEDR---DQLDSWLYVLLLMSAYQLRYLDKIPDHAVVNEAVELAK-L 111 Query: 138 FYGDEPKFINAVLDKVSRK 156 K +NAVL ++ R+ Sbjct: 112 RKKGSEKLVNAVLRRILRE 130 >gi|311113844|ref|YP_003985066.1| exopolyphosphatase [Rothia dentocariosa ATCC 17931] gi|310945338|gb|ADP41632.1| exopolyphosphatase [Rothia dentocariosa ATCC 17931] Length = 536 Score = 66.3 bits (161), Expect = 1e-09, Method: Composition-based stats. Identities = 29/145 (20%), Positives = 55/145 (37%), Gaps = 16/145 (11%) Query: 14 HRRGI--ARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71 R ARL A + L +++ ++Y H D + Sbjct: 36 RSRSADPARLVAFEVL-----------NAVAQNDSYANLVLPGTIRAHHLDHRDAGFATE 84 Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131 + +G + + D +++ C ++ +LR GV +L+ VP +++ V Sbjct: 85 LTYGTLRSQGTYDAILAHCADR--PLEKIGTTTLIVLRMGVHQLLSMR-VPAHAALNQSV 141 Query: 132 CIAHDFFYGDEPKFINAVLDKVSRK 156 +A G F+NAVL +VS + Sbjct: 142 ALARAQIGGGPANFVNAVLRRVSER 166 >gi|300741740|ref|ZP_07071761.1| ribosomal RNA small subunit methyltransferase B [Rothia dentocariosa M567] gi|300380925|gb|EFJ77487.1| ribosomal RNA small subunit methyltransferase B [Rothia dentocariosa M567] Length = 580 Score = 66.3 bits (161), Expect = 1e-09, Method: Composition-based stats. Identities = 29/145 (20%), Positives = 55/145 (37%), Gaps = 16/145 (11%) Query: 14 HRRGI--ARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71 R ARL A + L +++ ++Y H D + Sbjct: 80 RSRSADPARLVAFEVL-----------NAVAQNDSYANLVLPGTIRAHHLDHRDAGFATE 128 Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131 + +G + + D +++ C ++ +LR GV +L+ VP +++ V Sbjct: 129 LTYGTLRSQGTYDAILAHCADR--PLEKIGTTTLIVLRMGVHQLLSMR-VPAHAALNQSV 185 Query: 132 CIAHDFFYGDEPKFINAVLDKVSRK 156 +A G F+NAVL +VS + Sbjct: 186 ALARAQIGGGPANFVNAVLRRVSER 210 >gi|258508664|ref|YP_003171415.1| tRNA and rRNA cytosine-C5-methytransferase [Lactobacillus rhamnosus GG] gi|257148591|emb|CAR87564.1| tRNA and rRNA cytosine-C5-methytransferase (sun protein) [Lactobacillus rhamnosus GG] gi|259649970|dbj|BAI42132.1| RNA methyltransferase [Lactobacillus rhamnosus GG] Length = 446 Score = 66.3 bits (161), Expect = 1e-09, Method: Composition-based stats. Identities = 30/150 (20%), Positives = 57/150 (38%), Gaps = 21/150 (14%) Query: 20 RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79 RL AVQ L T ++ + D + + D +++GV+ Sbjct: 7 RLLAVQTL----------TRVMGKGGYSNLTLDHVITKYQLDSR-DAGLLTNVVYGVIQH 55 Query: 80 KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139 + +D L++ + + +LD + +L+ V +L VP + + IA + Sbjct: 56 QLTLDYLLAPFVKNR----QLDTWVRCLLQTAVYQLQYLDKVPARAVFFDSTEIAKKLGH 111 Query: 140 GDEPKFINAVLDKVSRKEEIKRSGCVSAIT 169 KF+ VL + +RSG +T Sbjct: 112 QGVAKFVTGVL------RQAQRSGYPDPMT 135 >gi|302023430|ref|ZP_07248641.1| ribosomal RNA small subunit methyltransferase [Streptococcus suis 05HAS68] Length = 444 Score = 66.3 bits (161), Expect = 1e-09, Method: Composition-based stats. Identities = 32/156 (20%), Positives = 64/156 (41%), Gaps = 21/156 (13%) Query: 14 HRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVII 73 ++ AR A+ L E + + Y A + S D ++ Sbjct: 4 NKHETARSLALSVL-----------EQVFDQGAYSNIALNKALESSRLSAQDKGLATELV 52 Query: 74 HGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCI 133 +G + RK ++ ++ + ++ +LD + +L + +L+ +P +++E V I Sbjct: 53 YGTVSRKITLEWYLAHFIEDR---EKLDTWVYYLLMLSLYQLVYLDKLPTHAVVNEAVNI 109 Query: 134 AHDFFYGDEPKFINAVLDKVS-----RKEEIKRSGC 164 A D KF+NA+L K+S + +IKR Sbjct: 110 AKRKPGTD--KFVNAILRKLSQDSLPKPADIKRKNK 143 >gi|322377784|ref|ZP_08052273.1| ribosomal RNA small subunit methyltransferase B [Streptococcus sp. M334] gi|321281207|gb|EFX58218.1| ribosomal RNA small subunit methyltransferase B [Streptococcus sp. M334] Length = 437 Score = 66.3 bits (161), Expect = 2e-09, Method: Composition-based stats. Identities = 30/139 (21%), Positives = 55/139 (39%), Gaps = 15/139 (10%) Query: 18 IARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVM 77 AR A+ L E + + Y A + S D I++G + Sbjct: 6 TARSLALAGL-----------EDVFINQAYSNIALNKHLKGSQLSAADKGLVTEIVYGTV 54 Query: 78 DRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDF 137 RK ++ +S + ++ +LD L +L +L +P +++E V +A Sbjct: 55 ARKLTLEWYLSHFIEDR---DQLDSWLYVLLLMSAYQLRYLDKIPDHAVVNEAVELAKVR 111 Query: 138 FYGDEPKFINAVLDKVSRK 156 G K +NAVL ++ R+ Sbjct: 112 KKG-SEKLVNAVLRRILRE 129 >gi|224061230|ref|XP_002300381.1| predicted protein [Populus trichocarpa] gi|222847639|gb|EEE85186.1| predicted protein [Populus trichocarpa] Length = 527 Score = 66.3 bits (161), Expect = 2e-09, Method: Composition-based stats. Identities = 23/102 (22%), Positives = 46/102 (45%), Gaps = 1/102 (0%) Query: 59 SVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIEC 118 DL I+ G + ++++D LI S ++ +F ++ +L ILR G E+++ Sbjct: 106 KDLDDRDLRLVTDIVGGTIRWRRYLDYLIGSLCHDEKAFRSMEPLLLQILRIGFYEIVK- 164 Query: 119 HSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIK 160 +P ++ E V +A +N +L K+ +E Sbjct: 165 LDMPSYAVVDENVRLAKVSLRPGAGNMVNGILRKLVLLKESN 206 >gi|148994053|ref|ZP_01823409.1| hypothetical protein CGSSp9BS68_01863 [Streptococcus pneumoniae SP9-BS68] gi|168488547|ref|ZP_02712746.1| ribosomal RNA small subunit methyltransferase B [Streptococcus pneumoniae SP195] gi|147927520|gb|EDK78548.1| hypothetical protein CGSSp9BS68_01863 [Streptococcus pneumoniae SP9-BS68] gi|183572591|gb|EDT93119.1| ribosomal RNA small subunit methyltransferase B [Streptococcus pneumoniae SP195] Length = 437 Score = 66.3 bits (161), Expect = 2e-09, Method: Composition-based stats. Identities = 28/139 (20%), Positives = 54/139 (38%), Gaps = 15/139 (10%) Query: 18 IARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVM 77 AR A+ L E + + Y A + S D +++G + Sbjct: 6 TARSLALAVL-----------EDVFVNQAYSNIALNKHLKGSQLSAADKGLVTELVYGTV 54 Query: 78 DRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDF 137 RK ++ +S + ++ +LD L +L +L +P +++E V +A Sbjct: 55 ARKLTLEWYLSHFIEDR---DQLDSWLYVLLLMSAYQLRYLDKIPDHAVVNEAVELAK-L 110 Query: 138 FYGDEPKFINAVLDKVSRK 156 K +NAVL ++ R+ Sbjct: 111 RKKGSEKLVNAVLRRILRE 129 >gi|183982229|ref|YP_001850520.1| Fmu protein [Mycobacterium marinum M] gi|183175555|gb|ACC40665.1| Fmu protein [Mycobacterium marinum M] Length = 481 Score = 66.3 bits (161), Expect = 2e-09, Method: Composition-based stats. Identities = 39/171 (22%), Positives = 59/171 (34%), Gaps = 30/171 (17%) Query: 4 QDNKKDLKLSH-------------RRGI---ARLAAVQALYQIDIIGCSTTEIISEYETY 47 Q N+ D K RR AR AA AL +SE Y Sbjct: 9 QRNRPDRKPRRSEGTGVPNQRRGPRRRPLDPARGAAFNAL-----------RAVSERNAY 57 Query: 48 RFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSI 107 L E D + + +G + +D +I + S +D +L + Sbjct: 58 ANLVLPALLRERGITGRDAAFATELTYGACRARGLLDAIIGAA--AGRSPEAIDPVLLDL 115 Query: 108 LRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEE 158 LR G +L+ V +S V A F F+NAVL ++ ++E Sbjct: 116 LRLGAYQLL-RTRVDAHAAVSTTVEQAGIEFDSARAGFVNAVLRTIADRDE 165 >gi|148989395|ref|ZP_01820763.1| hypothetical protein CGSSp6BS73_07854 [Streptococcus pneumoniae SP6-BS73] gi|147925145|gb|EDK76225.1| hypothetical protein CGSSp6BS73_07854 [Streptococcus pneumoniae SP6-BS73] Length = 437 Score = 66.3 bits (161), Expect = 2e-09, Method: Composition-based stats. Identities = 28/139 (20%), Positives = 54/139 (38%), Gaps = 15/139 (10%) Query: 18 IARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVM 77 AR A+ L E + + Y A + S D +++G + Sbjct: 6 TARSLALAVL-----------EDVFVNQAYSNIALNKHLKGSQLSAADKGLVTELVYGTV 54 Query: 78 DRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDF 137 RK ++ +S + ++ +LD L +L +L +P +++E V +A Sbjct: 55 ARKLTLEWYLSHFIEDR---DQLDSWLYVLLLMSAYQLRYLDKIPDHAVVNEAVELAK-L 110 Query: 138 FYGDEPKFINAVLDKVSRK 156 K +NAVL ++ R+ Sbjct: 111 RKKGSEKLVNAVLRRILRE 129 >gi|225859487|ref|YP_002740997.1| ribosomal RNA small subunit methyltransferase B [Streptococcus pneumoniae 70585] gi|225721429|gb|ACO17283.1| ribosomal RNA small subunit methyltransferase B [Streptococcus pneumoniae 70585] Length = 437 Score = 66.3 bits (161), Expect = 2e-09, Method: Composition-based stats. Identities = 28/139 (20%), Positives = 54/139 (38%), Gaps = 15/139 (10%) Query: 18 IARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVM 77 AR A+ L E + + Y A + S D +++G + Sbjct: 6 TARSLALAVL-----------EDVFVNQAYSNIALNKHLKGSQLSAADKGLVTELVYGTV 54 Query: 78 DRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDF 137 RK ++ +S + ++ +LD L +L +L +P +++E V +A Sbjct: 55 ARKLTLEWYLSHFIEDR---DQLDSWLYVLLLMSAYQLRYLDKIPDHAVVNEAVELAK-L 110 Query: 138 FYGDEPKFINAVLDKVSRK 156 K +NAVL ++ R+ Sbjct: 111 RKKGSEKLVNAVLRRILRE 129 >gi|194397538|ref|YP_002038345.1| ribosomal RNA small subunit methyltransferase B [Streptococcus pneumoniae G54] gi|194357205|gb|ACF55653.1| ribosomal RNA small subunit methyltransferase B [Streptococcus pneumoniae G54] gi|301794709|emb|CBW37160.1| putative ribosomal RNA small subunit methyltransferase [Streptococcus pneumoniae INV104] Length = 437 Score = 66.3 bits (161), Expect = 2e-09, Method: Composition-based stats. Identities = 28/139 (20%), Positives = 54/139 (38%), Gaps = 15/139 (10%) Query: 18 IARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVM 77 AR A+ L E + + Y A + S D +++G + Sbjct: 6 TARSLALAVL-----------EDVFVNQAYSNIALNKHLKGSQLSAADKGLVTELVYGTV 54 Query: 78 DRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDF 137 RK ++ +S + ++ +LD L +L +L +P +++E V +A Sbjct: 55 ARKLTLEWYLSHFIEDR---DQLDSWLYVLLLMSAYQLRYLDKIPDHAVVNEAVELAK-L 110 Query: 138 FYGDEPKFINAVLDKVSRK 156 K +NAVL ++ R+ Sbjct: 111 RKKGSEKLVNAVLRRILRE 129 >gi|269956515|ref|YP_003326304.1| Fmu (Sun) domain-containing protein [Xylanimonas cellulosilytica DSM 15894] gi|269305196|gb|ACZ30746.1| Fmu (Sun) domain protein [Xylanimonas cellulosilytica DSM 15894] Length = 517 Score = 66.3 bits (161), Expect = 2e-09, Method: Composition-based stats. Identities = 32/151 (21%), Positives = 55/151 (36%), Gaps = 17/151 (11%) Query: 6 NKKDLKLSHRRGI---ARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYL 62 ++ S RR AR AA L + + Y L E Sbjct: 33 SRTTQAPSQRRRRTDPARTAAFDVL-----------RDVDGSDAYANLVLPPLLRERGIT 81 Query: 63 HVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVP 122 D + + +G + + D +++ C+ RLD + +LR G +++ VP Sbjct: 82 GRDAAFATELTYGTLRLRGRYDAILTRCVDR--PLDRLDPDVLDVLRLGAHQILGMR-VP 138 Query: 123 VEVIISEYVCIAHDFFYGDEPKFINAVLDKV 153 +SE V + D + +NAVL +V Sbjct: 139 THAAVSETVALTRDRVGTGASQLVNAVLRRV 169 >gi|255994461|ref|ZP_05427596.1| 16S rRNA M(5)C 967 methyltransferase [Eubacterium saphenum ATCC 49989] gi|255993174|gb|EEU03263.1| 16S rRNA M(5)C 967 methyltransferase [Eubacterium saphenum ATCC 49989] Length = 461 Score = 66.3 bits (161), Expect = 2e-09, Method: Composition-based stats. Identities = 32/144 (22%), Positives = 58/144 (40%), Gaps = 19/144 (13%) Query: 20 RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79 RLAA ALY I+ G + E + + R ++ G + Sbjct: 11 RLAAFWALYNIE-KGKYSNVAFEE-------------STKGLSAREAAFVRELVFGTLKL 56 Query: 80 KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139 +D ++ +K +R+ + +LR G+ +L SVP ++E + IA Sbjct: 57 NIKLDHAMNHLKDKK---ARIKLKDRILLRLGLYQLDYMDSVPDYAAVNETIAIAKKLVK 113 Query: 140 GDEPKFINAVL-DKVSRKEEIKRS 162 INA+L + +++EI+ S Sbjct: 114 NK-VGLINAILRGYIRKRQEIEDS 136 >gi|254415201|ref|ZP_05028963.1| ribosomal RNA small subunit methyltransferase B [Microcoleus chthonoplastes PCC 7420] gi|196178007|gb|EDX73009.1| ribosomal RNA small subunit methyltransferase B [Microcoleus chthonoplastes PCC 7420] Length = 448 Score = 66.3 bits (161), Expect = 2e-09, Method: Composition-based stats. Identities = 25/136 (18%), Positives = 43/136 (31%), Gaps = 13/136 (9%) Query: 20 RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79 R A AL I G T + + + D +++G Sbjct: 5 RQLAFLALRDIHSHGAFTDIALDRVLRH-----------TTLNRPDRALLTDLVYGTTRH 53 Query: 80 KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139 + +D LI +K L IL G+ +L +P ++ V +A Sbjct: 54 TRTLDALIDQLGKKKAHQQ--PPDLRLILHLGLYQLRYLQRIPPSAAVNTSVELAKANQL 111 Query: 140 GDEPKFINAVLDKVSR 155 +N VL + +R Sbjct: 112 KGLAGVVNGVLRQYAR 127 >gi|183603236|ref|ZP_02710913.2| ribosomal RNA small subunit methyltransferase B [Streptococcus pneumoniae CDC1087-00] gi|307127948|ref|YP_003879979.1| ribosomal RNA small subunit methyltransferase B [Streptococcus pneumoniae 670-6B] gi|183570571|gb|EDT91099.1| ribosomal RNA small subunit methyltransferase B [Streptococcus pneumoniae CDC1087-00] gi|306485010|gb|ADM91879.1| ribosomal RNA small subunit methyltransferase B [Streptococcus pneumoniae 670-6B] gi|332199760|gb|EGJ13835.1| ribosomal RNA small subunit methyltransferase B [Streptococcus pneumoniae GA41317] Length = 437 Score = 66.3 bits (161), Expect = 2e-09, Method: Composition-based stats. Identities = 28/139 (20%), Positives = 54/139 (38%), Gaps = 15/139 (10%) Query: 18 IARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVM 77 AR A+ L E + + Y A + S D +++G + Sbjct: 6 TARSLALAVL-----------EDVFVNQAYSNIALNKHLKGSQLSAADKGLVTELVYGTV 54 Query: 78 DRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDF 137 RK ++ +S + ++ +LD L +L +L +P +++E V +A Sbjct: 55 ARKLTLEWYLSHFIEDR---DQLDSWLYVLLLMSAYQLRYLDKIPDHAVVNEAVELAK-L 110 Query: 138 FYGDEPKFINAVLDKVSRK 156 K +NAVL ++ R+ Sbjct: 111 RKKGSEKLVNAVLRRILRE 129 >gi|319757554|gb|ADV69496.1| tRNA and rRNA cytosine-C5-methylase [Streptococcus suis JS14] Length = 436 Score = 66.3 bits (161), Expect = 2e-09, Method: Composition-based stats. Identities = 32/158 (20%), Positives = 65/158 (41%), Gaps = 21/158 (13%) Query: 12 LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71 + ++ AR A+ L E + + Y A + S D Sbjct: 1 MINKHETARSLALSVL-----------EQVFDQGAYSNIALNKALESSRLSAQDKGLATE 49 Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131 +++G + RK ++ ++ + ++ +LD + +L + +L+ +P +++E V Sbjct: 50 LVYGTVSRKITLEWYLAHFIEDR---EKLDTWVYYLLMLSLYQLVYLDKLPTHAVVNEAV 106 Query: 132 CIAHDFFYGDEPKFINAVLDKVS-----RKEEIKRSGC 164 IA D KF+NA+L K+S + +IKR Sbjct: 107 NIAKRKPGTD--KFVNAILRKLSQDSLPKPADIKRKNK 142 >gi|118463294|ref|YP_882553.1| Fmu protein [Mycobacterium avium 104] gi|118164581|gb|ABK65478.1| Fmu protein [Mycobacterium avium 104] Length = 439 Score = 65.9 bits (160), Expect = 2e-09, Method: Composition-based stats. Identities = 26/119 (21%), Positives = 47/119 (39%), Gaps = 3/119 (2%) Query: 40 IISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSR 99 +SE + Y A L E D + + +G + +D +I + Sbjct: 4 AVSERDAYANLALPALLRERGITGRDAAFATELTYGTCRTRGLLDAVIGAA--AGRPPEA 61 Query: 100 LDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEE 158 +D +L +LR G +L+ V +S V A F F+N VL +++ ++E Sbjct: 62 IDPVLLDLLRLGTYQLL-RTRVDAHAAVSTTVEQAAIEFDSARAGFVNGVLRRIAGRDE 119 >gi|218245524|ref|YP_002370895.1| sun protein [Cyanothece sp. PCC 8801] gi|218166002|gb|ACK64739.1| sun protein [Cyanothece sp. PCC 8801] Length = 451 Score = 65.9 bits (160), Expect = 2e-09, Method: Composition-based stats. Identities = 26/126 (20%), Positives = 49/126 (38%), Gaps = 5/126 (3%) Query: 40 IISEYETYRFCADTELD---VESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWS 96 I+ E E D +D + D +++G++ RK+ +D LI L +K S Sbjct: 17 ILREIERRGTFTDIAIDRGLKSTDLSGSDRALVTELVYGIVRRKRTLDTLIDQ-LGKKAS 75 Query: 97 FSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRK 156 + L IL G+ +L +P ++ V +A + +N +L + R Sbjct: 76 HQQ-PPDLRLILYIGLYQLRYLSQIPPSAAVNTAVNLAKENSLQRLSGVVNGILRQYIRL 134 Query: 157 EEIKRS 162 + Sbjct: 135 AQENND 140 >gi|332362987|gb|EGJ40776.1| RNA methyltransferase Sun [Streptococcus sanguinis SK49] Length = 438 Score = 65.9 bits (160), Expect = 2e-09, Method: Composition-based stats. Identities = 32/145 (22%), Positives = 60/145 (41%), Gaps = 15/145 (10%) Query: 12 LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71 + ++ AR A++ L E+ E Y A +S D Sbjct: 1 MESKQKTARWQALEIL----------EEVFEE-RAYSNIALNRALSQSPLSQADKGLVTE 49 Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131 +++G + RK ++ +S L E ++LD L +L + +++ +P + E V Sbjct: 50 LVYGTVARKITLEWYLS-HLIEDR--NKLDNWLYILLMLSLYQMLFLDKIPQHAAVHEAV 106 Query: 132 CIAHDFFYGDEPKFINAVLDKVSRK 156 IA G KF+NA+L ++ R+ Sbjct: 107 EIAKIRKRG-SEKFVNALLRRIERE 130 >gi|146318081|ref|YP_001197793.1| tRNA and rRNA cytosine-C5-methylase [Streptococcus suis 05ZYH33] gi|146320260|ref|YP_001199971.1| tRNA and rRNA cytosine-C5-methylase [Streptococcus suis 98HAH33] gi|253751274|ref|YP_003024415.1| ribosomal RNA small subunit methyltransferase [Streptococcus suis SC84] gi|253753175|ref|YP_003026315.1| ribosomal RNA small subunit methyltransferase [Streptococcus suis P1/7] gi|253754998|ref|YP_003028138.1| ribosomal RNA small subunit methyltransferase [Streptococcus suis BM407] gi|145688887|gb|ABP89393.1| tRNA and rRNA cytosine-C5-methylase [Streptococcus suis 05ZYH33] gi|145691066|gb|ABP91571.1| tRNA and rRNA cytosine-C5-methylase [Streptococcus suis 98HAH33] gi|251815563|emb|CAZ51146.1| putative ribosomal RNA small subunit methyltransferase [Streptococcus suis SC84] gi|251817462|emb|CAZ55203.1| putative ribosomal RNA small subunit methyltransferase [Streptococcus suis BM407] gi|251819420|emb|CAR44892.1| putative ribosomal RNA small subunit methyltransferase [Streptococcus suis P1/7] gi|292557843|gb|ADE30844.1| rRNA SAM-dependent methyltransferase [Streptococcus suis GZ1] Length = 437 Score = 65.9 bits (160), Expect = 2e-09, Method: Composition-based stats. Identities = 32/156 (20%), Positives = 64/156 (41%), Gaps = 21/156 (13%) Query: 14 HRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVII 73 ++ AR A+ L E + + Y A + S D ++ Sbjct: 4 NKHETARSLALSVL-----------EQVFDQGAYSNIALNKALESSRLSAQDKGLATELV 52 Query: 74 HGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCI 133 +G + RK ++ ++ + ++ +LD + +L + +L+ +P +++E V I Sbjct: 53 YGTVSRKITLEWYLAHFIEDR---EKLDTWVYYLLMLSLYQLVYLDKLPTHAVVNEAVNI 109 Query: 134 AHDFFYGDEPKFINAVLDKVS-----RKEEIKRSGC 164 A D KF+NA+L K+S + +IKR Sbjct: 110 AKRKPGTD--KFVNAILRKLSQDSLPKPADIKRKNK 143 >gi|115376613|ref|ZP_01463843.1| ribosomal RNA small subunit methyltransferase B [Stigmatella aurantiaca DW4/3-1] gi|115366356|gb|EAU65361.1| ribosomal RNA small subunit methyltransferase B [Stigmatella aurantiaca DW4/3-1] Length = 425 Score = 65.9 bits (160), Expect = 2e-09, Method: Composition-based stats. Identities = 24/103 (23%), Positives = 40/103 (38%), Gaps = 3/103 (2%) Query: 52 DTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAG 111 DT L D + +G R+ +D I+ K ++ + + LR G Sbjct: 13 DTALSEAPPRDARDTALATELAYGTTRRQLALDYAITRFADRK--LDAMEDRVLAALRIG 70 Query: 112 VLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVS 154 +L VP ++E V D G F+NA+L K++ Sbjct: 71 AYQLFYTR-VPARAAVAETVQALKDLGVGRAAGFVNAILRKLA 112 >gi|227431998|ref|ZP_03914018.1| RNA methyltransferase [Leuconostoc mesenteroides subsp. cremoris ATCC 19254] gi|227352283|gb|EEJ42489.1| RNA methyltransferase [Leuconostoc mesenteroides subsp. cremoris ATCC 19254] Length = 448 Score = 65.9 bits (160), Expect = 2e-09, Method: Composition-based stats. Identities = 25/148 (16%), Positives = 56/148 (37%), Gaps = 19/148 (12%) Query: 12 LSHRRGIA---RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEW 68 +S +R + R+ AVQ L + Y ++ + D Sbjct: 1 MSDKRVYSDNPRVLAVQTL------------AKIKNGAYSNLQLNQVIKQHKLGEADTRL 48 Query: 69 FRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIIS 128 +++GV+ + + + + K ++D + +L + ++ +P I + Sbjct: 49 LTTLVYGVIQHRLTFEYWLEPFVGSK----KIDPWVRELLYTAIFQMEYLDKIPQHAIFN 104 Query: 129 EYVCIAHDFFYGDEPKFINAVLDKVSRK 156 E + +A + KF+ A+L +SRK Sbjct: 105 ESIEVAKILGHVGTGKFVTAILHNISRK 132 >gi|257058561|ref|YP_003136449.1| sun protein [Cyanothece sp. PCC 8802] gi|256588727|gb|ACU99613.1| sun protein [Cyanothece sp. PCC 8802] Length = 451 Score = 65.9 bits (160), Expect = 2e-09, Method: Composition-based stats. Identities = 26/126 (20%), Positives = 49/126 (38%), Gaps = 5/126 (3%) Query: 40 IISEYETYRFCADTELD---VESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWS 96 I+ E E D +D + D +++G++ RK+ +D LI L +K S Sbjct: 17 ILREIERRGTFTDIAIDRGLKSTDLSGSDRALVTELVYGIVRRKRTLDTLIDQ-LGKKAS 75 Query: 97 FSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRK 156 + L IL G+ +L +P ++ V +A + +N +L + R Sbjct: 76 HQQ-PPDLRLILYIGLYQLRYLSQIPPSAAVNTAVNLAKENSLQRLSGVVNGILRQYIRL 134 Query: 157 EEIKRS 162 + Sbjct: 135 AQENND 140 >gi|309798767|ref|ZP_07693031.1| ribosomal RNA small subunit methyltransferase B [Streptococcus infantis SK1302] gi|308117584|gb|EFO54996.1| ribosomal RNA small subunit methyltransferase B [Streptococcus infantis SK1302] Length = 437 Score = 65.9 bits (160), Expect = 2e-09, Method: Composition-based stats. Identities = 31/139 (22%), Positives = 57/139 (41%), Gaps = 15/139 (10%) Query: 18 IARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVM 77 AR A++ L E + + Y A + S D +++G + Sbjct: 6 TARNLALKVL-----------EDVFVNQAYSNIALNKHLKGSQLSATDKGLVTELVYGTV 54 Query: 78 DRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDF 137 RK ++ +S + ++ +LD L +L V +L +P +++E V IA Sbjct: 55 ARKLTLEWYLSHFIEDR---DKLDNWLYVLLLMSVYQLQYLDKLPDHAVVNEAVEIAKSR 111 Query: 138 FYGDEPKFINAVLDKVSRK 156 G K +NAVL ++ R+ Sbjct: 112 KKG-SEKLVNAVLRRILRE 129 >gi|116618607|ref|YP_818978.1| tRNA and rRNA cytosine-C5-methylase [Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293] gi|116097454|gb|ABJ62605.1| tRNA and rRNA cytosine-C5-methylase [Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293] Length = 448 Score = 65.9 bits (160), Expect = 2e-09, Method: Composition-based stats. Identities = 25/148 (16%), Positives = 56/148 (37%), Gaps = 19/148 (12%) Query: 12 LSHRRGIA---RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEW 68 +S +R + R+ AVQ L + Y ++ + D Sbjct: 1 MSDKRVYSDNPRVLAVQTL------------AKIKNGAYSNLQLNQVIKQHKLGEADTRL 48 Query: 69 FRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIIS 128 +++GV+ + + + + K ++D + +L + ++ +P I + Sbjct: 49 LTTLVYGVIQHRLTFEYWLEPFVGSK----KIDPWVRELLYTAIFQMEYLDKIPQHAIFN 104 Query: 129 EYVCIAHDFFYGDEPKFINAVLDKVSRK 156 E + +A + KF+ A+L +SRK Sbjct: 105 ESIEVAKILGHVGTGKFVTAILHNISRK 132 >gi|223932608|ref|ZP_03624608.1| sun protein [Streptococcus suis 89/1591] gi|223898718|gb|EEF65079.1| sun protein [Streptococcus suis 89/1591] Length = 436 Score = 65.9 bits (160), Expect = 2e-09, Method: Composition-based stats. Identities = 29/144 (20%), Positives = 61/144 (42%), Gaps = 16/144 (11%) Query: 12 LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71 + ++ AR A+ L E + + Y A + S D Sbjct: 1 MINKHETARSLALSVL-----------EQVFDQGAYSNIALNKALESSRLSAQDKGLATE 49 Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131 +++G + RK ++ ++ + ++ +LD + +L + +L+ +P +++E V Sbjct: 50 LVYGTVSRKITLEWYLAHFIEDR---EKLDTWIYYLLMLSLYQLVYLDKLPTHAVVNEAV 106 Query: 132 CIAHDFFYGDEPKFINAVLDKVSR 155 IA D KF+NA+L K+S+ Sbjct: 107 NIAKRKPGTD--KFVNAILRKISQ 128 >gi|332072565|gb|EGI83048.1| nusB family protein [Streptococcus pneumoniae GA17570] Length = 153 Score = 65.9 bits (160), Expect = 2e-09, Method: Composition-based stats. Identities = 28/139 (20%), Positives = 54/139 (38%), Gaps = 15/139 (10%) Query: 18 IARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVM 77 AR A+ L E + + Y A + S D +++G + Sbjct: 6 TARSLALAVL-----------EDVFVNQAYSNIALNKHLKGSQLSAADKGLVTELVYGTV 54 Query: 78 DRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDF 137 RK ++ +S + ++ +LD L +L +L +P +++E V +A Sbjct: 55 ARKLTLEWYLSHFIEDR---DQLDSWLYVLLLMSAYQLRYLDKIPDHAVVNEAVELAK-L 110 Query: 138 FYGDEPKFINAVLDKVSRK 156 K +NAVL ++ R+ Sbjct: 111 RKKGSEKLVNAVLRRILRE 129 >gi|322374811|ref|ZP_08049325.1| ribosomal RNA small subunit methyltransferase B [Streptococcus sp. C300] gi|321280311|gb|EFX57350.1| ribosomal RNA small subunit methyltransferase B [Streptococcus sp. C300] Length = 437 Score = 65.9 bits (160), Expect = 2e-09, Method: Composition-based stats. Identities = 30/139 (21%), Positives = 55/139 (39%), Gaps = 15/139 (10%) Query: 18 IARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVM 77 AR A+ L E + + Y A + S D I++G + Sbjct: 6 TARSLALAVL-----------EDVLVNQAYSNIALNKHLKGSQLSVADKGLVTEIVYGTV 54 Query: 78 DRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDF 137 RK ++ +S + ++ +LD L +L +L +P +++E V +A Sbjct: 55 ARKLTLEWYLSHFIQDR---DKLDNWLYILLLLSAYQLRYLDKIPNHAVVNEAVELAKAR 111 Query: 138 FYGDEPKFINAVLDKVSRK 156 G K +NAVL ++ R+ Sbjct: 112 KKG-SEKLVNAVLRRILRE 129 >gi|254423387|ref|ZP_05037105.1| ribosomal RNA small subunit methyltransferase B [Synechococcus sp. PCC 7335] gi|196190876|gb|EDX85840.1| ribosomal RNA small subunit methyltransferase B [Synechococcus sp. PCC 7335] Length = 491 Score = 65.9 bits (160), Expect = 2e-09, Method: Composition-based stats. Identities = 32/145 (22%), Positives = 61/145 (42%), Gaps = 6/145 (4%) Query: 12 LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71 + + AR A +AL ID + +++ + + T+L ++ D Sbjct: 31 KTAKPKTARQIAFEALRAIDQG--AFADVVIDRKLKGTQTGTQLGIQ--LSSQDKGLVTE 86 Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131 +++G + R++ +D LI S+ L ILR G +L VPV ++ V Sbjct: 87 LVYGSVRRRRTLDALIDQFGKR--PASKQHRDLLQILRLGFYQLRYLDHVPVHAVVDTTV 144 Query: 132 CIAHDFFYGDEPKFINAVLDKVSRK 156 +A G +NA+L + +R+ Sbjct: 145 QLAKSQRLGKLSGVVNAMLRQYARE 169 >gi|222153508|ref|YP_002562685.1| ribosomal RNA small subunit methyltransferase [Streptococcus uberis 0140J] gi|222114321|emb|CAR43000.1| putative ribosomal RNA small subunit methyltransferase [Streptococcus uberis 0140J] Length = 440 Score = 65.5 bits (159), Expect = 2e-09, Method: Composition-based stats. Identities = 31/139 (22%), Positives = 58/139 (41%), Gaps = 15/139 (10%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 + AR A+ A+ E I + Y A + D I++G Sbjct: 6 KREARGKALMAI-----------EDIFDNGAYSNLALNQHLNHQALNAKDKALITEIVYG 54 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135 + RK ++ +S + ++ +RLD + +L + +L+ VP I+++ V IA Sbjct: 55 TVSRKLTLEWHLSHVIEDR---NRLDKWVYYLLMISLYQLLYLDKVPQHAIVNDAVNIAK 111 Query: 136 DFFYGDEP-KFINAVLDKV 153 + KF+NAVL ++ Sbjct: 112 NRGNNRGAEKFVNAVLRQL 130 >gi|307710617|ref|ZP_07647051.1| ribosomal RNA small subunit methyltransferase B [Streptococcus mitis SK564] gi|307618662|gb|EFN97804.1| ribosomal RNA small subunit methyltransferase B [Streptococcus mitis SK564] Length = 437 Score = 65.5 bits (159), Expect = 2e-09, Method: Composition-based stats. Identities = 34/157 (21%), Positives = 61/157 (38%), Gaps = 20/157 (12%) Query: 18 IARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVM 77 AR A+ L E + + Y A + S D I++G + Sbjct: 6 TARSIALAVL-----------EDVFVNQAYSNIALNKHLKGSQLSAADKGLVTEIVYGTV 54 Query: 78 DRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDF 137 RK ++ +S + ++ +LD L +L +L +P +++E V +A Sbjct: 55 ARKLTLEWYLSHFIEDR---DQLDSWLYVLLLMSAYQLRYLDKIPDHAVVNEAVELAKVR 111 Query: 138 FYGDEPKFINAVLDKVSRK-----EEIKRSGCVSAIT 169 G K +NAVL ++ R+ + IKR +I Sbjct: 112 KKG-SEKLVNAVLRRILREGWPDIDNIKRKNKRDSIA 147 >gi|254383563|ref|ZP_04998913.1| RNA-binding Sun protein [Streptomyces sp. Mg1] gi|194342458|gb|EDX23424.1| RNA-binding Sun protein [Streptomyces sp. Mg1] Length = 308 Score = 65.5 bits (159), Expect = 2e-09, Method: Composition-based stats. Identities = 25/135 (18%), Positives = 53/135 (39%), Gaps = 10/135 (7%) Query: 20 RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79 R+ A + L +D ++ + + + D +++G + R Sbjct: 44 RMLAFEVLRAVDERDAYANLVLPPLLR-------KARQDENFEARDAALATELVYGTLRR 96 Query: 80 KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139 + D +I++C+ +D + +L G +L+ +P +S V +A Sbjct: 97 QGTYDAVIAACVDR--PLREVDPPVLDVLSLGAHQLLGTR-IPSHAAVSASVELARVVLG 153 Query: 140 GDEPKFINAVLDKVS 154 KF+NAVL K++ Sbjct: 154 DGRAKFVNAVLRKIA 168 >gi|153003322|ref|YP_001377647.1| NusB/RsmB/TIM44 [Anaeromyxobacter sp. Fw109-5] gi|152026895|gb|ABS24663.1| NusB/RsmB/TIM44 [Anaeromyxobacter sp. Fw109-5] Length = 439 Score = 65.5 bits (159), Expect = 2e-09, Method: Composition-based stats. Identities = 26/137 (18%), Positives = 48/137 (35%), Gaps = 13/137 (9%) Query: 19 ARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMD 78 AR A + L ++D G + + D L + +++G + Sbjct: 3 ARQIAFEVLRRVDEGGAYASRAL----------DAALTGAGALDPREAGLATELVYGTLR 52 Query: 79 RKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFF 138 R +D ++ LD LR G +L+ P + E V + Sbjct: 53 RSLTLDAALAPHSRR--PVGALDPPARVALRLGAYQLLFMGK-PPHAAVGETVSLVKAVD 109 Query: 139 YGDEPKFINAVLDKVSR 155 +G ++NAVL ++R Sbjct: 110 HGRAAGYVNAVLRALAR 126 >gi|72161480|ref|YP_289137.1| RNA-binding Sun protein [Thermobifida fusca YX] gi|71915212|gb|AAZ55114.1| putative RNA-binding Sun protein [Thermobifida fusca YX] Length = 476 Score = 65.5 bits (159), Expect = 2e-09, Method: Composition-based stats. Identities = 30/152 (19%), Positives = 53/152 (34%), Gaps = 14/152 (9%) Query: 2 TIQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVY 61 T + + + R AR A LY + ++ R Sbjct: 12 TRRSPRGSASRTRPRDPARRVAYDVLYAVQTRDAYANLLLPVLLRER-----------GI 60 Query: 62 LHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSV 121 D + +G + + D ++ +C+ S +D + +LR G +L+ V Sbjct: 61 TGRDAGLATELTYGTLRLQGSYDAVLDACVDR--SLRSVDTEVLPLLRMGAHQLLSM-DV 117 Query: 122 PVEVIISEYVCIAHDFFYGDEPKFINAVLDKV 153 P +S V +A +F+NAVL KV Sbjct: 118 PPHAAVSSTVDLARRIVGHHRARFVNAVLRKV 149 >gi|18483231|gb|AAL73975.1|AF466201_4 hypothetical protein M3E9.200 [Sorghum bicolor] Length = 274 Score = 65.5 bits (159), Expect = 2e-09, Method: Composition-based stats. Identities = 27/131 (20%), Positives = 51/131 (38%), Gaps = 19/131 (14%) Query: 34 GCSTTEIISEYETYRFCADTELDVES-----------VYLHVDLEWFRVIIHGVM----D 78 G E+ +E E + + E D + VY + L R ++ V Sbjct: 136 GGVPLEVGTEEEAEKLTSQNEKDSANEEDVLSAPPKLVYNNFVLRLSRELLVAVASGWDK 195 Query: 79 RKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFF 138 ID +I ++ +R+ + IL + E+ P +V+I+E V +A F Sbjct: 196 HVDIIDKIIPQAWKDE-PVARI--LELCILHIAMAEMT-SKGTPHKVVINEAVDLAKRFC 251 Query: 139 YGDEPKFINAV 149 G P+ ++ + Sbjct: 252 DGGAPRVMSGI 262 >gi|307150080|ref|YP_003885464.1| sun protein [Cyanothece sp. PCC 7822] gi|306980308|gb|ADN12189.1| sun protein [Cyanothece sp. PCC 7822] Length = 450 Score = 65.5 bits (159), Expect = 2e-09, Method: Composition-based stats. Identities = 25/137 (18%), Positives = 52/137 (37%), Gaps = 16/137 (11%) Query: 20 RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79 R AV + I + Y A + ++ +D +++G++ R Sbjct: 8 RQLAV-----------TILRDIYRKDAYTDIALDQGLKQAQLKSLDRGLVTELVYGIVRR 56 Query: 80 KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139 + +D LI+ + + L IL+ G+ +L +PV ++ V +A Sbjct: 57 VRTLDQLITQLGKKTATQQ--PPDLRIILQIGLYQLRYLDQIPVSAAVNTSVELAKKNQL 114 Query: 140 GDEPKFINAVL---DKV 153 G +N +L D++ Sbjct: 115 GKLSGVVNGILRQYDRI 131 >gi|229552470|ref|ZP_04441195.1| RNA methyltransferase [Lactobacillus rhamnosus LMS2-1] gi|258539841|ref|YP_003174340.1| tRNA and rRNA cytosine-C5-methytransferase (sun protein) [Lactobacillus rhamnosus Lc 705] gi|229314207|gb|EEN80180.1| RNA methyltransferase [Lactobacillus rhamnosus LMS2-1] gi|257151517|emb|CAR90489.1| tRNA and rRNA cytosine-C5-methytransferase (sun protein) [Lactobacillus rhamnosus Lc 705] Length = 446 Score = 65.5 bits (159), Expect = 2e-09, Method: Composition-based stats. Identities = 31/150 (20%), Positives = 57/150 (38%), Gaps = 21/150 (14%) Query: 20 RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79 RL AVQ L T ++ + D + + D I++GV+ Sbjct: 7 RLLAVQTL----------TRVMGKGGYSNLTLDHVITKYQLDSR-DAGLLTNIVYGVIQH 55 Query: 80 KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139 + +D L++ + + +LD + +L+ V +L VP + + IA + Sbjct: 56 QLTLDYLLAPFVKTR----QLDTWVRCLLQTSVYQLQYLDKVPARAVFFDSTEIAKKLGH 111 Query: 140 GDEPKFINAVLDKVSRKEEIKRSGCVSAIT 169 KF+ VL + +RSG +T Sbjct: 112 QGVAKFVTGVL------RQAQRSGYPDPMT 135 >gi|293402263|ref|ZP_06646401.1| ribosomal RNA small subunit methyltransferase B [Erysipelotrichaceae bacterium 5_2_54FAA] gi|291304370|gb|EFE45621.1| ribosomal RNA small subunit methyltransferase B [Erysipelotrichaceae bacterium 5_2_54FAA] Length = 415 Score = 65.5 bits (159), Expect = 3e-09, Method: Composition-based stats. Identities = 21/101 (20%), Positives = 39/101 (38%), Gaps = 11/101 (10%) Query: 63 HVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWS--FSRLDMILCSILR-AGVLELIECH 119 H D I++G + + + +W +L ++L +L Sbjct: 34 HKDKGLITTIVYGTLQNYR-----LCRY---QWEDMVQKLPKEETAVLLDMSAYQLFYMD 85 Query: 120 SVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIK 160 +P II+E V IA + +NAVL KV ++ + + Sbjct: 86 KLPAYAIINEAVEIAKKHGGKKQGALVNAVLHKVMQRGQRE 126 >gi|308234576|ref|ZP_07665313.1| NusB/RsmB/TIM44 [Atopobium vaginae DSM 15829] gi|328944365|ref|ZP_08241828.1| tRNA and rRNA cytosine-C5-methylase [Atopobium vaginae DSM 15829] gi|327491080|gb|EGF22856.1| tRNA and rRNA cytosine-C5-methylase [Atopobium vaginae DSM 15829] Length = 537 Score = 65.5 bits (159), Expect = 3e-09, Method: Composition-based stats. Identities = 22/136 (16%), Positives = 52/136 (38%), Gaps = 16/136 (11%) Query: 19 ARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMD 78 +R A +AL + + + ++ + E + + ++ GV+ Sbjct: 9 SRTVAFKALCALRKNTTYAQDFLKHFDAFCALLQDE-----------KSFVQHVVCGVIS 57 Query: 79 RKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFF 138 + +D +++ + F+ + LR EL+ + V+ S+YV + Sbjct: 58 SQSMVDKILAQYVKR---FAHQPYKVLICLRMATYELVYRQTAAYAVV-SQYVELVR-LV 112 Query: 139 YGDEPKFINAVLDKVS 154 F+NAVL +++ Sbjct: 113 DKRGASFVNAVLHRIA 128 >gi|329574298|gb|EGG55872.1| putative transcription antitermination protein NusB [Enterococcus faecalis TX1467] Length = 92 Score = 65.5 bits (159), Expect = 3e-09, Method: Composition-based stats. Identities = 24/93 (25%), Positives = 38/93 (40%), Gaps = 3/93 (3%) Query: 11 KLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFR 70 K R R A+QAL+ +D T + + Y D V + + Sbjct: 3 KTELTRHEIREKALQALFPLDFNADLTKQ---DAIDYALAYDNREIVSEDGEDLVPTYLD 59 Query: 71 VIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMI 103 +++ GV RK +D +I++ L WS RL I Sbjct: 60 LLVGGVCSRKAELDEVITNHLGNNWSMQRLAKI 92 >gi|75910625|ref|YP_324921.1| Fmu, rRNA SAM-dependent methyltransferase [Anabaena variabilis ATCC 29413] gi|75704350|gb|ABA24026.1| Fmu, rRNA SAM-dependent methyltransferase [Anabaena variabilis ATCC 29413] Length = 449 Score = 65.5 bits (159), Expect = 3e-09, Method: Composition-based stats. Identities = 27/146 (18%), Positives = 55/146 (37%), Gaps = 14/146 (9%) Query: 17 GIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGV 76 +R A AL D+ + T++ + ++ +D +++G Sbjct: 2 TNSRQIAFIAL--RDVHKGAYTDVALDRAL----------QKANLSDIDRRLVTELLYGS 49 Query: 77 MDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHD 136 + R++ +D +I +K L SIL G+ +L +P ++ V +A D Sbjct: 50 VRRQRTLDFIIDQLAKKKSHQQ--PTELRSILHLGLYQLRYQERIPASAAVNTTVELAKD 107 Query: 137 FFYGDEPKFINAVLDKVSRKEEIKRS 162 + F+N +L + R E Sbjct: 108 NGFAGLTGFVNGLLRQYIRLAEASPD 133 >gi|282901368|ref|ZP_06309293.1| Fmu, rRNA SAM-dependent methyltransferase [Cylindrospermopsis raciborskii CS-505] gi|281193647|gb|EFA68619.1| Fmu, rRNA SAM-dependent methyltransferase [Cylindrospermopsis raciborskii CS-505] Length = 446 Score = 65.5 bits (159), Expect = 3e-09, Method: Composition-based stats. Identities = 26/139 (18%), Positives = 52/139 (37%), Gaps = 14/139 (10%) Query: 20 RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79 R A AL ++ + +I + ++F D +++G + R Sbjct: 7 RQIAFTAL--REVHRGAYADIAIDRTLHKF----------KLSDHDRRLMTELVYGSVRR 54 Query: 80 KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139 ++ +D +I +K L IL G+ +L +PV ++ V +A + + Sbjct: 55 QRSLDAIIDQIADKKSPQQ--PRDLRCILHLGLYQLRYQQKIPVSAAVNTTVQLAKENGF 112 Query: 140 GDEPKFINAVLDKVSRKEE 158 F+N L + R E Sbjct: 113 PGLTGFVNGFLRQYIRLLE 131 >gi|323489537|ref|ZP_08094764.1| ribosomal RNA small subunit methyltransferase B [Planococcus donghaensis MPA1U2] gi|323396668|gb|EGA89487.1| ribosomal RNA small subunit methyltransferase B [Planococcus donghaensis MPA1U2] Length = 450 Score = 65.5 bits (159), Expect = 3e-09, Method: Composition-based stats. Identities = 18/88 (20%), Positives = 36/88 (40%), Gaps = 5/88 (5%) Query: 68 WFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVII 127 I +G + + +D + L K ++ + +LR + +++ +P ++ Sbjct: 48 LLTEITYGTLQHQMTLDYYLEPYLKGK-----IESWVKILLRLSLYQIVYLDRIPAHAVV 102 Query: 128 SEYVCIAHDFFYGDEPKFINAVLDKVSR 155 E V IA +G +N VL V R Sbjct: 103 HEAVEIAKRRGHGGVASVVNGVLRSVQR 130 >gi|331697235|ref|YP_004333474.1| Fmu (Sun) domain-containing protein [Pseudonocardia dioxanivorans CB1190] gi|326951924|gb|AEA25621.1| Fmu (Sun) domain protein [Pseudonocardia dioxanivorans CB1190] Length = 482 Score = 65.1 bits (158), Expect = 3e-09, Method: Composition-based stats. Identities = 23/139 (16%), Positives = 51/139 (36%), Gaps = 3/139 (2%) Query: 32 IIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCL 91 + + E + Y A + D + +G + +D ++++C Sbjct: 40 VAAHELLTAVRERDAYANLAMPAILRRHRLRDRDAALATELGYGTLRALGLLDAVVAACA 99 Query: 92 TEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLD 151 R++ L LR G +L+ +P + V + D F+NA+L Sbjct: 100 DR--PLHRIEPPLVDALRLGAYQLL-RTRIPAHAAVDTIVDLVRDRAGSRSAGFVNAILR 156 Query: 152 KVSRKEEIKRSGCVSAITQ 170 KV+ ++E + ++ + Sbjct: 157 KVAEQDEAAWTAQLAPSVE 175 >gi|226323830|ref|ZP_03799348.1| hypothetical protein COPCOM_01605 [Coprococcus comes ATCC 27758] gi|225208014|gb|EEG90368.1| hypothetical protein COPCOM_01605 [Coprococcus comes ATCC 27758] Length = 357 Score = 65.1 bits (158), Expect = 3e-09, Method: Composition-based stats. Identities = 14/59 (23%), Positives = 28/59 (47%) Query: 100 LDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEE 158 + ++ +ILR V ++ VP +E V +A + + F+N VL ++R + Sbjct: 1 MKPVIRNILRCAVYQIKYMDQVPDSAACNEAVNLAIRKGFKNLRGFVNGVLRNIARNID 59 >gi|323350301|ref|ZP_08085966.1| RNA methyltransferase Sun [Streptococcus sanguinis VMC66] gi|322123486|gb|EFX95157.1| RNA methyltransferase Sun [Streptococcus sanguinis VMC66] Length = 438 Score = 65.1 bits (158), Expect = 3e-09, Method: Composition-based stats. Identities = 33/145 (22%), Positives = 59/145 (40%), Gaps = 15/145 (10%) Query: 12 LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71 + ++ AR A++ L E+ E Y A +S D Sbjct: 1 MESKQKTARWQALEIL----------EEVFEE-GAYSNIALNRALSQSKLSQADKGLVTE 49 Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131 +++G + RK ++ +S L E +LD L +L + +++ +P + E V Sbjct: 50 LVYGTVARKITLEWYLS-HLIEDR--DKLDNWLYILLMLSLYQMLYLDKIPQHATVHEAV 106 Query: 132 CIAHDFFYGDEPKFINAVLDKVSRK 156 IA G KFINA+L ++ R+ Sbjct: 107 EIAKIRKRG-SEKFINALLRRIERE 130 >gi|270293272|ref|ZP_06199483.1| sun protein [Streptococcus sp. M143] gi|270279251|gb|EFA25097.1| sun protein [Streptococcus sp. M143] Length = 437 Score = 65.1 bits (158), Expect = 3e-09, Method: Composition-based stats. Identities = 27/120 (22%), Positives = 51/120 (42%), Gaps = 4/120 (3%) Query: 37 TTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWS 96 E + ++ Y A + S D I++G + RK ++ +S + ++ Sbjct: 14 VLEDVFIHQAYSNIALNKHLKGSRLSVADKGLVTEIVYGTVARKLTLEWYLSHFIEDR-- 71 Query: 97 FSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRK 156 +LD L +L +L VP +++E V +A G K +NAVL ++ R+ Sbjct: 72 -DKLDNWLYILLLLSAYQLRYLDKVPNHAVVNEAVELAKARKKG-SEKLVNAVLRRILRE 129 >gi|307706106|ref|ZP_07642925.1| ribosomal RNA small subunit methyltransferase B [Streptococcus mitis SK321] gi|307618506|gb|EFN97654.1| ribosomal RNA small subunit methyltransferase B [Streptococcus mitis SK321] Length = 437 Score = 65.1 bits (158), Expect = 3e-09, Method: Composition-based stats. Identities = 25/120 (20%), Positives = 50/120 (41%), Gaps = 4/120 (3%) Query: 37 TTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWS 96 E + + Y A + S D +++G + RK ++ +S + ++ Sbjct: 14 VLEDVFINQAYSNIALNKHLKGSQLSVADKGLATELVYGTVARKLTLEWYLSHFIEDR-- 71 Query: 97 FSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRK 156 +LD L +L +L +P +++E V +A G K +NAVL ++ R+ Sbjct: 72 -DQLDSWLYVLLLMSAYQLRYLDKIPDHAVVNEAVELAKVRKKG-SEKLVNAVLRRILRE 129 >gi|38233907|ref|NP_939674.1| hypothetical protein DIP1321 [Corynebacterium diphtheriae NCTC 13129] gi|38200168|emb|CAE49849.1| Conserved hypothetical protein [Corynebacterium diphtheriae] Length = 485 Score = 65.1 bits (158), Expect = 3e-09, Method: Composition-based stats. Identities = 26/123 (21%), Positives = 48/123 (39%), Gaps = 19/123 (15%) Query: 58 ESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIE 117 +S D + + +G + + +D +I+ C + + L + + LR G +L+ Sbjct: 78 QSKLSGRDAAFATELTYGTLRTQGVLDTVIAECSSRE--LEALKPEVRAALRLGAYQLLY 135 Query: 118 -----CHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRK------EEIKRSGCVS 166 +V V I E + F+N VL +SR E++ SG V Sbjct: 136 TRVGAHAAVDTTVRIMEAI------GQDRAKGFVNGVLRTISRTSPQSWIEKLTPSGEVE 189 Query: 167 AIT 169 +I Sbjct: 190 SIA 192 >gi|114566754|ref|YP_753908.1| hypothetical protein Swol_1228 [Syntrophomonas wolfei subsp. wolfei str. Goettingen] gi|114337689|gb|ABI68537.1| conserved hypothetical protein [Syntrophomonas wolfei subsp. wolfei str. Goettingen] Length = 456 Score = 65.1 bits (158), Expect = 3e-09, Method: Composition-based stats. Identities = 29/142 (20%), Positives = 55/142 (38%), Gaps = 13/142 (9%) Query: 17 GIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGV 76 AR+ A + +Y+ + E + A + S D I++G Sbjct: 10 NKARIMAAEIVYE-----------VMERGAFANLALAKALRNSDLSAADRHLLTEIVNGT 58 Query: 77 MDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHD 136 + +H+D ++ L + + L SILR + +L+ VP ++++ V I+ Sbjct: 59 VRMIKHLDWVLELFLHS--PIKKQNPYLLSILRTALYQLMFLAKVPDYALVNDAVEISRQ 116 Query: 137 FFYGDEPKFINAVLDKVSRKEE 158 NAVL + RK + Sbjct: 117 KMGAKMAGVSNAVLRNIIRKLD 138 >gi|168483273|ref|ZP_02708225.1| ribosomal RNA small subunit methyltransferase B [Streptococcus pneumoniae CDC1873-00] gi|172043312|gb|EDT51358.1| ribosomal RNA small subunit methyltransferase B [Streptococcus pneumoniae CDC1873-00] Length = 437 Score = 65.1 bits (158), Expect = 3e-09, Method: Composition-based stats. Identities = 28/139 (20%), Positives = 55/139 (39%), Gaps = 15/139 (10%) Query: 18 IARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVM 77 AR A+ L E + + Y A + S D +++G + Sbjct: 6 TARSLALAVL-----------EDVFVNQAYSNIALNKHLKGSQLSAADKGLVTELVYGTV 54 Query: 78 DRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDF 137 RK ++ +S + ++ +LD L +L +L + +P +++E V +A Sbjct: 55 ARKLTLEWYLSHFIEDR---DQLDSWLYVLLLMSAYQLRYLNKIPDHAVVNEAVELAK-L 110 Query: 138 FYGDEPKFINAVLDKVSRK 156 K +NAVL ++ R+ Sbjct: 111 RKKGSEKLVNAVLRRILRE 129 >gi|227524617|ref|ZP_03954666.1| rRNA SAM-dependent methyltransferase RmsB [Lactobacillus hilgardii ATCC 8290] gi|227088292|gb|EEI23604.1| rRNA SAM-dependent methyltransferase RmsB [Lactobacillus hilgardii ATCC 8290] Length = 444 Score = 65.1 bits (158), Expect = 3e-09, Method: Composition-based stats. Identities = 20/114 (17%), Positives = 44/114 (38%), Gaps = 4/114 (3%) Query: 57 VESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELI 116 + VD F I++GV+ + ++ + L + D + +L + +L Sbjct: 34 ESTSMSDVDKALFTNIVYGVIQHRMTLEYQLVPFLKDSEKTE--DWV-KELLYTAMYQLE 90 Query: 117 ECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRSGCVSAITQ 170 VP I E + IA + +F+ +L ++ RK ++ + + Sbjct: 91 YLDRVPKRAIFDESIKIAKSMGHDGTRRFVTGILHQMDRKG-VREPDKIKDPVK 143 >gi|289168457|ref|YP_003446726.1| rRNA-specific 5-methylcytidine transferase [Streptococcus mitis B6] gi|288908024|emb|CBJ22864.1| rRNA-specific 5-methylcytidine transferase [Streptococcus mitis B6] Length = 438 Score = 65.1 bits (158), Expect = 3e-09, Method: Composition-based stats. Identities = 29/139 (20%), Positives = 56/139 (40%), Gaps = 15/139 (10%) Query: 18 IARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVM 77 AR A+ L E + + Y A + S D +++G + Sbjct: 7 TARSLALAVL-----------EDVFINQAYSNIALNKHLKGSQLSVADKGLVTELVYGTV 55 Query: 78 DRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDF 137 RK ++ +S + ++ +LD L +L +L + +P +++E V +A Sbjct: 56 ARKLTLEWYLSHFIEDR---DQLDSWLYVLLLMSAYQLRYLNKIPDHAVVNEAVELAKVR 112 Query: 138 FYGDEPKFINAVLDKVSRK 156 G K +NAVL ++ R+ Sbjct: 113 KKG-SEKLVNAVLRRILRE 130 >gi|17228315|ref|NP_484863.1| sun protein [Nostoc sp. PCC 7120] gi|17130165|dbj|BAB72777.1| sun protein [Nostoc sp. PCC 7120] Length = 449 Score = 65.1 bits (158), Expect = 3e-09, Method: Composition-based stats. Identities = 27/143 (18%), Positives = 55/143 (38%), Gaps = 14/143 (9%) Query: 17 GIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGV 76 +R A AL D+ + T++ + ++ +D +++G Sbjct: 2 TNSRQIAFIAL--RDVHKGAYTDVALDRAL----------QKANLSDIDRRLVTELLYGS 49 Query: 77 MDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHD 136 + R++ +D +I +K L SIL G+ +L +P ++ V +A D Sbjct: 50 VRRQRTLDFIIDQLAKKKSHQQ--PTELRSILHLGLYQLRYQERIPASAAVNTTVELAKD 107 Query: 137 FFYGDEPKFINAVLDKVSRKEEI 159 + F+N +L + R E Sbjct: 108 NGFAGLTGFVNGLLRQYIRLAEA 130 >gi|325294320|ref|YP_004280834.1| sun protein [Desulfurobacterium thermolithotrophum DSM 11699] gi|325064768|gb|ADY72775.1| sun protein [Desulfurobacterium thermolithotrophum DSM 11699] Length = 442 Score = 64.7 bits (157), Expect = 4e-09, Method: Composition-based stats. Identities = 19/111 (17%), Positives = 40/111 (36%), Gaps = 3/111 (2%) Query: 39 EIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFS 98 +I++ +E + + S D + R I+ G + + +D I + Sbjct: 12 KILNRFEKDKKLKEHIEKFTSRLHPQDRAFIREIVSGTVRFLRLLDFSIEKATGKN--LK 69 Query: 99 RLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAV 149 R + + LR ++ +VP ++E V F+NA+ Sbjct: 70 RQKNTVRNSLRVIAYQI-FFTNVPPYAALNETVEAVKKILGKKAAGFVNAI 119 >gi|113474586|ref|YP_720647.1| sun protein [Trichodesmium erythraeum IMS101] gi|110165634|gb|ABG50174.1| sun protein [Trichodesmium erythraeum IMS101] Length = 443 Score = 64.7 bits (157), Expect = 4e-09, Method: Composition-based stats. Identities = 22/121 (18%), Positives = 47/121 (38%), Gaps = 5/121 (4%) Query: 40 IISEYETYRFCADTELD---VESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWS 96 I+ E + D LD ++ + + +++G + R++ +D +I +K Sbjct: 12 ILQEIYRKQVFTDVALDRHLKKNDLIDANRRLVTELVYGCVRRQRSLDAIIDQLAKKKSP 71 Query: 97 FSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRK 156 L IL G+ +L +P + V +A + F+N +L + R+ Sbjct: 72 QQH--PYLRIILHIGLYQLSYLEQIPESAAVDTTVELAKQNKFAKLAGFVNGLLREYIRQ 129 Query: 157 E 157 Sbjct: 130 N 130 >gi|325688781|gb|EGD30790.1| RNA methyltransferase Sun [Streptococcus sanguinis SK115] Length = 438 Score = 64.7 bits (157), Expect = 4e-09, Method: Composition-based stats. Identities = 33/145 (22%), Positives = 58/145 (40%), Gaps = 15/145 (10%) Query: 12 LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71 + + AR A++ L E+ E Y A +S D Sbjct: 1 MESKHKTARWQALEIL----------EEVFEE-GAYSNIALNRALSQSPLSQADKGLVTE 49 Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131 +++G + RK ++ +S L E +LD L +L + +++ +P + E V Sbjct: 50 LVYGTVARKITLEWYLS-HLIEDR--DKLDNWLYILLMLSLYQMLYLDKIPQHATVHEAV 106 Query: 132 CIAHDFFYGDEPKFINAVLDKVSRK 156 IA G KFINA+L ++ R+ Sbjct: 107 EIAKIRKRG-SEKFINALLRRIERE 130 >gi|296877028|ref|ZP_06901070.1| ribosomal RNA small subunit methyltransferase B [Streptococcus parasanguinis ATCC 15912] gi|296431972|gb|EFH17777.1| ribosomal RNA small subunit methyltransferase B [Streptococcus parasanguinis ATCC 15912] Length = 437 Score = 64.7 bits (157), Expect = 4e-09, Method: Composition-based stats. Identities = 32/138 (23%), Positives = 61/138 (44%), Gaps = 15/138 (10%) Query: 19 ARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMD 78 AR V+ L E + E+ Y A + S D + +++G + Sbjct: 8 AREQIVRVL-----------EEVFEHGAYSNIALKKTLEHSQLSDKDRSFVTEVVYGTVA 56 Query: 79 RKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFF 138 RK ++ +S + ++ ++LD + +L + +L+ +P I++E V IA Sbjct: 57 RKITLEWYLSHVIEDR---TKLDPWVYYLLMMSLYQLVYLDRIPDHAIVNEAVRIAKSRK 113 Query: 139 YGDEPKFINAVLDKVSRK 156 G KF+NA+L K+ R+ Sbjct: 114 EG-SEKFVNAILRKLLRE 130 >gi|331703221|ref|YP_004399908.1| Sun family protein [Mycoplasma mycoides subsp. capri LC str. 95010] gi|328801776|emb|CBW53929.1| Sun family protein [Mycoplasma mycoides subsp. capri LC str. 95010] Length = 423 Score = 64.7 bits (157), Expect = 4e-09, Method: Composition-based stats. Identities = 25/95 (26%), Positives = 48/95 (50%), Gaps = 7/95 (7%) Query: 65 DLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILC-SILRAGVLELIECHSVPV 123 D ++ ++HGV+ K H+D L++ + K + I IL + ++I +S+P Sbjct: 37 DKDFVFNLVHGVISNKIHLDYLLAKLIDVKKT-----SIDLQIILLISLYQMIYLNSIPN 91 Query: 124 EVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEE 158 I++E V + + FINA+L+K R ++ Sbjct: 92 YAIVNESVNLIKT-TSQKQANFINAILNKFLRFKD 125 >gi|169832803|ref|YP_001695109.1| ribosomal RNA small subunit methyltransferase B [Streptococcus pneumoniae Hungary19A-6] gi|168995305|gb|ACA35917.1| ribosomal RNA small subunit methyltransferase B [Streptococcus pneumoniae Hungary19A-6] Length = 437 Score = 64.7 bits (157), Expect = 4e-09, Method: Composition-based stats. Identities = 28/139 (20%), Positives = 55/139 (39%), Gaps = 15/139 (10%) Query: 18 IARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVM 77 AR A+ L E + + Y A + S L D +++G + Sbjct: 6 TARSLALAVL-----------EDVFVNQAYSNIALNKHLKGSQLLAADKGLVTELVYGTV 54 Query: 78 DRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDF 137 RK ++ +S + ++ +LD L +L +L +P +++E V +A Sbjct: 55 ARKLTLEWYLSHFIEDR---DQLDSWLYVLLLMSAYQLRYLDKIPDHAVVNEAVELAK-L 110 Query: 138 FYGDEPKFINAVLDKVSRK 156 K +NA+L ++ R+ Sbjct: 111 RKKGSEKLVNALLRRILRE 129 >gi|119512103|ref|ZP_01631196.1| Fmu, rRNA SAM-dependent methyltransferase [Nodularia spumigena CCY9414] gi|119463261|gb|EAW44205.1| Fmu, rRNA SAM-dependent methyltransferase [Nodularia spumigena CCY9414] Length = 449 Score = 64.7 bits (157), Expect = 4e-09, Method: Composition-based stats. Identities = 21/91 (23%), Positives = 40/91 (43%), Gaps = 2/91 (2%) Query: 65 DLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVE 124 D +++G + R++ +D LI T+K L SIL G+ +L +P Sbjct: 38 DRRLLTELVYGSVRRQRTLDTLIDQLATKKSHQQ--PKDLRSILHLGLYQLRYQERIPAS 95 Query: 125 VIISEYVCIAHDFFYGDEPKFINAVLDKVSR 155 ++ V +A + + F+N +L + R Sbjct: 96 AAVNTTVQLAKENGFSGLTGFVNGLLRQYIR 126 >gi|15807162|ref|NP_295891.1| sun protein [Deinococcus radiodurans R1] gi|6459968|gb|AAF11717.1|AE002050_3 sun protein, putative [Deinococcus radiodurans R1] Length = 439 Score = 64.7 bits (157), Expect = 4e-09, Method: Composition-based stats. Identities = 33/157 (21%), Positives = 60/157 (38%), Gaps = 22/157 (14%) Query: 1 MTIQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESV 60 MT +++ + AR AV+ L +++ E + A + Sbjct: 24 MTRPPDRRPQPFNP----AREVAVRVL----------IRVLAG-EGFAATALDSALQSAR 68 Query: 61 YLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHS 120 D I++G + +D +S LT K ++L AG E + Sbjct: 69 LPGRDAGLATHIVYGTLRHFPSLDAALSPLLTGKTH-----PKARALLLAGAFEKLH-LD 122 Query: 121 VPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKE 157 P+ +++EYV +A D P +NAVL +V + + Sbjct: 123 TPLHAVVNEYVNLARD-ARLAPPGLVNAVLRRVEKAD 158 >gi|116492597|ref|YP_804332.1| tRNA and rRNA cytosine-C5-methylase [Pediococcus pentosaceus ATCC 25745] gi|116102747|gb|ABJ67890.1| tRNA and rRNA cytosine-C5-methylase [Pediococcus pentosaceus ATCC 25745] Length = 444 Score = 64.7 bits (157), Expect = 4e-09, Method: Composition-based stats. Identities = 29/152 (19%), Positives = 55/152 (36%), Gaps = 25/152 (16%) Query: 12 LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71 ++++ AR AV L E I E + ++ S + +D Sbjct: 1 MTNQNNSARNLAVDIL-----------EKIDEGSFSNIQLNQDIK-SSSLIDIDKNLLTE 48 Query: 72 IIHGVMDRKQHIDLLISSCL-----TEKWSFSRLDMILCSILRAGVLELIECHSVPVEVI 126 I++GV+ + +D ++ + T +W ++LR V ++ VP I Sbjct: 49 IVYGVLQHRLTLDFYLADYIRKPEMTPRWVI--------NLLRTAVFQMEFLDRVPDFAI 100 Query: 127 ISEYVCIAHDFFYGDEPKFINAVLDKVSRKEE 158 +E + IA K + VL R + Sbjct: 101 FNESIEIAKLRGNDGIRKMVTGVLRSYQRNGK 132 >gi|322391001|ref|ZP_08064506.1| RNA methyltransferase Sun [Streptococcus parasanguinis ATCC 903] gi|321142305|gb|EFX37778.1| RNA methyltransferase Sun [Streptococcus parasanguinis ATCC 903] Length = 437 Score = 64.7 bits (157), Expect = 4e-09, Method: Composition-based stats. Identities = 32/138 (23%), Positives = 60/138 (43%), Gaps = 15/138 (10%) Query: 19 ARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMD 78 AR V+ L E + E Y A + S D + +++G + Sbjct: 8 AREQIVRVL-----------EEVFEQGAYSNIALNQALEHSQLSDKDRSFVTEVVYGTVA 56 Query: 79 RKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFF 138 RK ++ ++ + ++ ++LD L +L + +L+ +P I++E V IA Sbjct: 57 RKITLEWYLAHVIEDR---TKLDPWLYYLLMMSLYQLVYLDRIPDHAIVNEAVRIAKRRK 113 Query: 139 YGDEPKFINAVLDKVSRK 156 G KF+NA+L K+ R+ Sbjct: 114 EG-SEKFVNAILRKLLRE 130 >gi|307704312|ref|ZP_07641230.1| ribosomal RNA small subunit methyltransferase B [Streptococcus mitis SK597] gi|307622148|gb|EFO01167.1| ribosomal RNA small subunit methyltransferase B [Streptococcus mitis SK597] Length = 437 Score = 64.7 bits (157), Expect = 4e-09, Method: Composition-based stats. Identities = 29/139 (20%), Positives = 56/139 (40%), Gaps = 15/139 (10%) Query: 18 IARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVM 77 AR A+ L E + + Y A + S D +++G + Sbjct: 6 TARSLALAVL-----------EDVFINQAYSNIALNKHLKGSQLSVADKGLVTELVYGTV 54 Query: 78 DRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDF 137 RK ++ +S + ++ +LD L +L +L + +P +++E V +A Sbjct: 55 ARKLTLEWYLSHFIEDR---DQLDSWLYVLLLMSAYQLRYLNKIPDHAVVNEAVELAKVR 111 Query: 138 FYGDEPKFINAVLDKVSRK 156 G K +NAVL ++ R+ Sbjct: 112 KKG-SEKLVNAVLRRILRE 129 >gi|225861556|ref|YP_002743065.1| ribosomal RNA small subunit methyltransferase B [Streptococcus pneumoniae Taiwan19F-14] gi|298230282|ref|ZP_06963963.1| ribosomal RNA small subunit methyltransferase B [Streptococcus pneumoniae str. Canada MDR_19F] gi|298254901|ref|ZP_06978487.1| ribosomal RNA small subunit methyltransferase B [Streptococcus pneumoniae str. Canada MDR_19A] gi|298503480|ref|YP_003725420.1| rRNA SAM-dependent methyltransferase RmsB [Streptococcus pneumoniae TCH8431/19A] gi|225726400|gb|ACO22251.1| ribosomal RNA small subunit methyltransferase B [Streptococcus pneumoniae Taiwan19F-14] gi|298239075|gb|ADI70206.1| rRNA SAM-dependent methyltransferase RmsB [Streptococcus pneumoniae TCH8431/19A] gi|327389919|gb|EGE88264.1| ribosomal RNA small subunit methyltransferase B [Streptococcus pneumoniae GA04375] gi|332200294|gb|EGJ14367.1| ribosomal RNA small subunit methyltransferase B [Streptococcus pneumoniae GA47368] Length = 437 Score = 64.7 bits (157), Expect = 4e-09, Method: Composition-based stats. Identities = 28/139 (20%), Positives = 55/139 (39%), Gaps = 15/139 (10%) Query: 18 IARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVM 77 AR A+ L E + + Y A + S L D +++G + Sbjct: 6 TARSLALAVL-----------EDVFVNQAYSNIALNKHLKGSQLLAADKGLVTELVYGTV 54 Query: 78 DRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDF 137 RK ++ +S + ++ +LD L +L +L +P +++E V +A Sbjct: 55 ARKLTLEWYLSHFIEDR---DQLDSWLYVLLLMSAYQLRYLDKIPDHAVVNEAVELAK-L 110 Query: 138 FYGDEPKFINAVLDKVSRK 156 K +NA+L ++ R+ Sbjct: 111 RKKGSEKLVNALLRRILRE 129 >gi|297588339|ref|ZP_06946982.1| probable rRNA methylase [Finegoldia magna ATCC 53516] gi|297573712|gb|EFH92433.1| probable rRNA methylase [Finegoldia magna ATCC 53516] Length = 423 Score = 64.7 bits (157), Expect = 4e-09, Method: Composition-based stats. Identities = 23/97 (23%), Positives = 46/97 (47%), Gaps = 5/97 (5%) Query: 59 SVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIEC 118 D+ + + + ++ + ID +IS C ++LD I+ ILR E++ Sbjct: 31 GDLDKRDIAYIKRCVFTEIENRFFIDYVISKC--SDLELNKLDKIVLEILRMATTEILFM 88 Query: 119 HSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSR 155 + V+ E V +A++ + + ++NAVL +V R Sbjct: 89 KTADYAVV-DEAVELANNLTHYKD--YVNAVLREVCR 122 >gi|326693796|ref|ZP_08230801.1| 16S rRNA methyltransferase B [Leuconostoc argentinum KCTC 3773] Length = 452 Score = 64.7 bits (157), Expect = 4e-09, Method: Composition-based stats. Identities = 26/162 (16%), Positives = 63/162 (38%), Gaps = 19/162 (11%) Query: 12 LSHRRGIA---RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEW 68 +S +R + R+ AVQ L + Y ++ + D Sbjct: 1 MSDKRVYSNNPRVLAVQTL------------AKIKNGAYSNLQLNQVIKQHQLGEADKRL 48 Query: 69 FRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIIS 128 +++GV+ + + ++ + +K +L+ + +L + ++ + +P I + Sbjct: 49 LTTLVYGVIQHRLTFEYWLAPFVGDK----KLNPWVRELLYTALFQMQYLNKIPQHAIFN 104 Query: 129 EYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRSGCVSAITQ 170 E + +A + KF+ A+L +SR+ + IT+ Sbjct: 105 ESIEVAKILGHVGTAKFVTAILHNISRQGLPDTAAIADPITR 146 >gi|227513475|ref|ZP_03943524.1| rRNA SAM-dependent methyltransferase RmsB [Lactobacillus buchneri ATCC 11577] gi|227083348|gb|EEI18660.1| rRNA SAM-dependent methyltransferase RmsB [Lactobacillus buchneri ATCC 11577] Length = 444 Score = 64.7 bits (157), Expect = 4e-09, Method: Composition-based stats. Identities = 22/119 (18%), Positives = 45/119 (37%), Gaps = 14/119 (11%) Query: 57 VESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCL-----TEKWSFSRLDMILCSILRAG 111 + VD F I++GV+ + ++ + L TE W + +L Sbjct: 34 ESTSMSDVDKALFTNIVYGVIQHRMTLEYQLVPFLKDPEKTEDW--------VKELLYTA 85 Query: 112 VLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRSGCVSAITQ 170 + +L VP I E + IA + +F+ +L ++ RK ++ + + Sbjct: 86 MYQLEYLDRVPKRAIFDESIKIAKSMGHDGTRRFVTGILHQMDRKG-VREPDKIKDPVK 143 >gi|83319809|ref|YP_424196.1| rRNA methyltransferase RsmB (sun protein), putative [Mycoplasma capricolum subsp. capricolum ATCC 27343] gi|83283695|gb|ABC01627.1| rRNA methyltransferase RsmB (sun protein), putative [Mycoplasma capricolum subsp. capricolum ATCC 27343] Length = 428 Score = 64.7 bits (157), Expect = 4e-09, Method: Composition-based stats. Identities = 25/95 (26%), Positives = 48/95 (50%), Gaps = 7/95 (7%) Query: 65 DLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCS-ILRAGVLELIECHSVPV 123 D ++ ++HGV+ K H+D L++ + K + I IL + ++I +S+P Sbjct: 46 DKDFVFNLVHGVISNKIHLDYLLAKLIDVKKT-----SIDLQVILLISLYQMIYLNSIPN 100 Query: 124 EVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEE 158 I++E V + + FINA+L+K R ++ Sbjct: 101 YAIVNESVNLIKT-TSQKQANFINAILNKFLRFKD 134 >gi|158338705|ref|YP_001519882.1| ribosomal RNA small subunit methyltransferase B [Acaryochloris marina MBIC11017] gi|158308946|gb|ABW30563.1| ribosomal RNA small subunit methyltransferase B [Acaryochloris marina MBIC11017] Length = 443 Score = 64.7 bits (157), Expect = 4e-09, Method: Composition-based stats. Identities = 18/94 (19%), Positives = 37/94 (39%), Gaps = 2/94 (2%) Query: 62 LHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSV 121 D +++G + R++ +D LI + + L ++L G+ +L + Sbjct: 35 ADADRRLLTELLYGSVRRQRTLDALIDQFAKK--PAHQQPPDLRTLLHLGLYQLRFLDHI 92 Query: 122 PVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSR 155 P I V +A F+N +L + +R Sbjct: 93 PDAAAIFTTVELAKQNQLSGLSGFVNGLLRQYAR 126 >gi|149020816|ref|ZP_01835345.1| hypothetical protein CGSSp23BS72_02224 [Streptococcus pneumoniae SP23-BS72] gi|221232467|ref|YP_002511620.1| ribosomal RNA small subunit methyltransferase [Streptococcus pneumoniae ATCC 700669] gi|225855165|ref|YP_002736677.1| ribosomal RNA small subunit methyltransferase B [Streptococcus pneumoniae JJA] gi|147930457|gb|EDK81440.1| hypothetical protein CGSSp23BS72_02224 [Streptococcus pneumoniae SP23-BS72] gi|220674928|emb|CAR69504.1| putative ribosomal RNA small subunit methyltransferase [Streptococcus pneumoniae ATCC 700669] gi|225722386|gb|ACO18239.1| ribosomal RNA small subunit methyltransferase B [Streptococcus pneumoniae JJA] Length = 437 Score = 64.7 bits (157), Expect = 4e-09, Method: Composition-based stats. Identities = 28/139 (20%), Positives = 55/139 (39%), Gaps = 15/139 (10%) Query: 18 IARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVM 77 AR A+ L E + + Y A + S L D +++G + Sbjct: 6 TARSLALAVL-----------EDVFVNQAYSNIALNKHLKGSQLLAADKGLVTELVYGTV 54 Query: 78 DRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDF 137 RK ++ +S + ++ +LD L +L +L +P +++E V +A Sbjct: 55 ARKLTLEWYLSHFIEDR---DQLDSWLYVLLLMSAYQLRYLDKIPDHAVVNEAVELAK-L 110 Query: 138 FYGDEPKFINAVLDKVSRK 156 K +NA+L ++ R+ Sbjct: 111 RKKGSEKLVNALLRRILRE 129 >gi|297571430|ref|YP_003697204.1| Fmu (Sun) domain protein [Arcanobacterium haemolyticum DSM 20595] gi|296931777|gb|ADH92585.1| Fmu (Sun) domain protein [Arcanobacterium haemolyticum DSM 20595] Length = 484 Score = 64.7 bits (157), Expect = 4e-09, Method: Composition-based stats. Identities = 34/155 (21%), Positives = 55/155 (35%), Gaps = 16/155 (10%) Query: 5 DNKKDLKLSHRRGI---ARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVY 61 +++ RG ARL L + E Y A + Sbjct: 2 SSQRPTNWKPGRGASDRARLVVFDVLM-----------AVEEDGAYANLALPREIRRARL 50 Query: 62 LHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSV 121 D + + +G + D +++ T + LD + +LR G +L+E Sbjct: 51 NKQDASYATNLCYGTLRLLGRWDAILA-HCTNGRPIAELDTAVKVLLRMGAHQLLELK-T 108 Query: 122 PVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRK 156 P I+E V IA + FINAVL +VS + Sbjct: 109 PPHAAINETVVIARNELSQGIAGFINAVLRRVSER 143 >gi|313665137|ref|YP_004047008.1| ribosomal RNA small subunit methyltransferase B [Mycoplasma leachii PG50] gi|312949207|gb|ADR23803.1| ribosomal RNA small subunit methyltransferase B [Mycoplasma leachii PG50] Length = 423 Score = 64.4 bits (156), Expect = 5e-09, Method: Composition-based stats. Identities = 25/95 (26%), Positives = 48/95 (50%), Gaps = 7/95 (7%) Query: 65 DLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILC-SILRAGVLELIECHSVPV 123 D ++ ++HGV+ K H+D L++ + K + I IL + ++I +S+P Sbjct: 37 DKDFVFNLVHGVISNKIHLDYLLAKLIDVKKT-----SIDLQIILLISLYQMIYLNSIPN 91 Query: 124 EVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEE 158 I++E V + + FINA+L+K R ++ Sbjct: 92 YAIVNESVNLIKT-TSQKQANFINAILNKFLRFKD 125 >gi|312867896|ref|ZP_07728101.1| ribosomal RNA small subunit methyltransferase B [Streptococcus parasanguinis F0405] gi|311096651|gb|EFQ54890.1| ribosomal RNA small subunit methyltransferase B [Streptococcus parasanguinis F0405] Length = 437 Score = 64.4 bits (156), Expect = 5e-09, Method: Composition-based stats. Identities = 31/138 (22%), Positives = 59/138 (42%), Gaps = 15/138 (10%) Query: 19 ARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMD 78 AR V+ L E + E Y A + S D + +++G + Sbjct: 8 AREQIVRVL-----------EEVFEQGAYSNIALNQALEHSQLSDKDRSFVTEVVYGTVA 56 Query: 79 RKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFF 138 RK ++ ++ + ++ ++LD L +L + +L+ +P I++E V IA Sbjct: 57 RKITLEWYLAHVIEDR---TKLDPWLYYLLMMSLYQLVYLDRIPDHAIVNEAVQIAK-CR 112 Query: 139 YGDEPKFINAVLDKVSRK 156 KF+NA+L K+ R+ Sbjct: 113 KEGSEKFVNAILRKLLRE 130 >gi|227510466|ref|ZP_03940515.1| rRNA SAM-dependent methyltransferase RmsB [Lactobacillus brevis subsp. gravesensis ATCC 27305] gi|227190118|gb|EEI70185.1| rRNA SAM-dependent methyltransferase RmsB [Lactobacillus brevis subsp. gravesensis ATCC 27305] Length = 444 Score = 64.4 bits (156), Expect = 5e-09, Method: Composition-based stats. Identities = 22/119 (18%), Positives = 45/119 (37%), Gaps = 14/119 (11%) Query: 57 VESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCL-----TEKWSFSRLDMILCSILRAG 111 + VD F I++GV+ + ++ + L TE W + +L Sbjct: 34 ESTSMSDVDKALFTNIVYGVIQHRMTLEYQLVPFLRDPEKTEDW--------VKELLYTA 85 Query: 112 VLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRSGCVSAITQ 170 + +L VP I E + IA + +F+ +L ++ RK ++ + + Sbjct: 86 MYQLEYLDRVPKRAIFDESIKIAKSMGHDGTRRFVTGILHQMDRKG-VREPDKIEDPVK 143 >gi|83815307|ref|YP_445018.1| ribosomal RNA small subunit methyltransferase B [Salinibacter ruber DSM 13855] gi|83756701|gb|ABC44814.1| ribosomal RNA small subunit methyltransferase B [Salinibacter ruber DSM 13855] Length = 427 Score = 64.4 bits (156), Expect = 5e-09, Method: Composition-based stats. Identities = 22/90 (24%), Positives = 39/90 (43%), Gaps = 3/90 (3%) Query: 69 FRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIIS 128 R ++ GV +++ +D ++ + ++ L ILR G+ EL+ S P + Sbjct: 24 ARELVAGVTRQRRWLDFVLGEAYHG--DYDSMEHRLQEILRLGLYELLF-QSTPTHAAVD 80 Query: 129 EYVCIAHDFFYGDEPKFINAVLDKVSRKEE 158 EYV +A +N VL + R E Sbjct: 81 EYVELAKQALRPGAGNLVNGVLRTIDRDRE 110 >gi|294506884|ref|YP_003570942.1| Ribosomal RNA small subunit methyltransferase B [Salinibacter ruber M8] gi|294343212|emb|CBH23990.1| Ribosomal RNA small subunit methyltransferase B [Salinibacter ruber M8] Length = 448 Score = 64.4 bits (156), Expect = 5e-09, Method: Composition-based stats. Identities = 22/90 (24%), Positives = 39/90 (43%), Gaps = 3/90 (3%) Query: 69 FRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIIS 128 R ++ GV +++ +D ++ + ++ L ILR G+ EL+ S P + Sbjct: 45 ARELVAGVTRQRRWLDFVLGEAYHG--DYDSMEHRLQEILRLGLYELLF-QSTPTHAAVD 101 Query: 129 EYVCIAHDFFYGDEPKFINAVLDKVSRKEE 158 EYV +A +N VL + R E Sbjct: 102 EYVELAKQALRPGAGNLVNGVLRTIDRDRE 131 >gi|218202330|gb|EEC84757.1| hypothetical protein OsI_31764 [Oryza sativa Indica Group] Length = 570 Score = 64.4 bits (156), Expect = 5e-09, Method: Composition-based stats. Identities = 27/96 (28%), Positives = 48/96 (50%), Gaps = 1/96 (1%) Query: 65 DLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVE 124 D+ VI+ G + K+++D LI S +E+ F ++ +L ILR G E+++ +VP Sbjct: 155 DIRLVTVIVAGTVRWKRYLDYLIMSLCSEEKVFREMEPLLLQILRIGFFEILK-LNVPAY 213 Query: 125 VIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIK 160 + E V +A +NA+L K+ +E Sbjct: 214 AAVDENVRLAKVALRPGAGNLVNAILRKLLLLKEAN 249 >gi|261866823|ref|YP_003254745.1| methionyl-tRNA formyltransferase [Aggregatibacter actinomycetemcomitans D11S-1] gi|261412155|gb|ACX81526.1| methionyl-tRNA formyltransferase [Aggregatibacter actinomycetemcomitans D11S-1] Length = 451 Score = 64.4 bits (156), Expect = 6e-09, Method: Composition-based stats. Identities = 34/156 (21%), Positives = 62/156 (39%), Gaps = 23/156 (14%) Query: 10 LKLSHRRGIA-------RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYL 62 +K S + A R AAVQ L+Q+ G S + ++ D + V Sbjct: 1 MKTSKAKTSAETTALSARTAAVQILFQVLEQGKSLSSLL-------------PDAQVVIK 47 Query: 63 HVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVP 122 DL + I GV ++ +I+ + + I+ +L G+ +++ +P Sbjct: 48 AQDLPLLQEICFGVCRVLPRLEQIIAQLVDK--PLRGKKRIVHCLLLVGLYQILYTR-IP 104 Query: 123 VEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEE 158 V + E V A + +NAVL + R++E Sbjct: 105 VYAAVDEIVNTAKNLQLQSFQGLVNAVLRRFLREQE 140 >gi|126649674|ref|ZP_01721910.1| 16S rRNA m(5)C 967 methyltransferase [Bacillus sp. B14905] gi|126593393|gb|EAZ87338.1| 16S rRNA m(5)C 967 methyltransferase [Bacillus sp. B14905] Length = 453 Score = 64.4 bits (156), Expect = 6e-09, Method: Composition-based stats. Identities = 16/92 (17%), Positives = 35/92 (38%), Gaps = 5/92 (5%) Query: 65 DLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVE 124 D + +G + K +D + + +D + +LR + ++ +P Sbjct: 48 DRALLTELTYGTLQHKMTLDYYLEPFIRGS-----IDHWVRWLLRISLYQMQYLTRIPAH 102 Query: 125 VIISEYVCIAHDFFYGDEPKFINAVLDKVSRK 156 ++E V IA + +N +L V R+ Sbjct: 103 AAVNEAVEIAKRRGHRGIASTVNGILRSVLRQ 134 >gi|115479747|ref|NP_001063467.1| Os09g0477900 [Oryza sativa Japonica Group] gi|52077347|dbj|BAD46388.1| sunL protein-like [Oryza sativa Japonica Group] gi|113631700|dbj|BAF25381.1| Os09g0477900 [Oryza sativa Japonica Group] gi|222641777|gb|EEE69909.1| hypothetical protein OsJ_29754 [Oryza sativa Japonica Group] Length = 570 Score = 64.4 bits (156), Expect = 6e-09, Method: Composition-based stats. Identities = 27/96 (28%), Positives = 48/96 (50%), Gaps = 1/96 (1%) Query: 65 DLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVE 124 D+ VI+ G + K+++D LI S +E+ F ++ +L ILR G E+++ +VP Sbjct: 155 DIRLVTVIVAGTVRWKRYLDYLIMSLCSEEKVFREMEPLLLQILRIGFFEILK-LNVPAY 213 Query: 125 VIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIK 160 + E V +A +NA+L K+ +E Sbjct: 214 AAVDENVRLAKVALRPGAGNLVNAILRKLLLLKEAN 249 >gi|159902549|ref|YP_001549893.1| transcription antitermination protein NusB [Prochlorococcus marinus str. MIT 9211] gi|159887725|gb|ABX07939.1| Antitermination protein NusB [Prochlorococcus marinus str. MIT 9211] Length = 211 Score = 64.4 bits (156), Expect = 6e-09, Method: Composition-based stats. Identities = 19/81 (23%), Positives = 34/81 (41%), Gaps = 2/81 (2%) Query: 73 IHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVC 132 + V+ Q I+L + + W RL I ILR I + P+ V +E V Sbjct: 124 VSLVLQNLQSINLNLDEVMD-GWRLKRLPRIDQDILRLA-YIDIHILNAPIAVACNEAVN 181 Query: 133 IAHDFFYGDEPKFINAVLDKV 153 + + + + IN +L ++ Sbjct: 182 LGNKYSDKQGRRMINGILRRL 202 >gi|331266904|ref|YP_004326534.1| rRNA-specific 5-methylcytidine transferase [Streptococcus oralis Uo5] gi|326683576|emb|CBZ01194.1| rRNA-specific 5-methylcytidine transferase [Streptococcus oralis Uo5] Length = 437 Score = 64.0 bits (155), Expect = 6e-09, Method: Composition-based stats. Identities = 31/139 (22%), Positives = 55/139 (39%), Gaps = 15/139 (10%) Query: 18 IARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVM 77 AR A+ L E + + Y A + S D I++G + Sbjct: 6 TARNLALAVL-----------EDVFVNQAYSNIALNKHLKGSQLSAPDKGLVTEIVYGTV 54 Query: 78 DRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDF 137 RK ++ +S + ++ +LD L +L +L +P +++E V IA Sbjct: 55 ARKLTLEWYLSHFIEDR---DKLDNWLYILLLLSAYQLRYLDKIPNHAVVNEAVEIAKAR 111 Query: 138 FYGDEPKFINAVLDKVSRK 156 G K +NAVL ++ R+ Sbjct: 112 KKG-SEKLVNAVLRRILRE 129 >gi|254302720|ref|ZP_04970078.1| rRNA methyltransferase [Fusobacterium nucleatum subsp. polymorphum ATCC 10953] gi|148322912|gb|EDK88162.1| rRNA methyltransferase [Fusobacterium nucleatum subsp. polymorphum ATCC 10953] Length = 434 Score = 64.0 bits (155), Expect = 6e-09, Method: Composition-based stats. Identities = 20/111 (18%), Positives = 44/111 (39%), Gaps = 13/111 (11%) Query: 53 TELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSC---LTEKWSFSRLDMILCSILR 109 + E + + I +GV+ K+ +D +I + ++W + ++LR Sbjct: 25 NDAFREFFLSPKEKAFMTEIFYGVIRNKKFLDYIIERYTKDIRKEW--------IRNLLR 76 Query: 110 AGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIK 160 + ++ +S V+ E +A + KFIN L R ++ + Sbjct: 77 ISIYQITFMNSDDKGVVW-EATELAKKYSTAIS-KFINGTLRNYLRNKDSE 125 >gi|238854793|ref|ZP_04645123.1| ribosomal RNA small subunit methyltransferase B [Lactobacillus jensenii 269-3] gi|260664024|ref|ZP_05864877.1| ribosomal RNA small subunit methyltransferase B [Lactobacillus jensenii SJ-7A-US] gi|282933871|ref|ZP_06339219.1| ribosomal RNA small subunit methyltransferase B [Lactobacillus jensenii 208-1] gi|238832583|gb|EEQ24890.1| ribosomal RNA small subunit methyltransferase B [Lactobacillus jensenii 269-3] gi|260561910|gb|EEX27879.1| ribosomal RNA small subunit methyltransferase B [Lactobacillus jensenii SJ-7A-US] gi|281301960|gb|EFA94214.1| ribosomal RNA small subunit methyltransferase B [Lactobacillus jensenii 208-1] Length = 437 Score = 64.0 bits (155), Expect = 6e-09, Method: Composition-based stats. Identities = 21/107 (19%), Positives = 43/107 (40%), Gaps = 6/107 (5%) Query: 58 ESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIE 117 E+ D + +++G + + ++ + L K L +L V +LI Sbjct: 33 ENNLSQKDQAFVTQLVYGTIQYQLFLEYQLKDLLRTKLKEDYLKP----LLLMSVYQLIF 88 Query: 118 CHSVPVEVIISEYVCIAHDFFYGDEPKF--INAVLDKVSRKEEIKRS 162 + VP ++ E +A DF + F +N +L R+ ++ S Sbjct: 89 LNRVPNRAVLDEANKLAKDFGKKNSSGFRLVNGILRSFLRRGQVLPS 135 >gi|169827064|ref|YP_001697222.1| ribosomal RNA small subunit methyltransferase B [Lysinibacillus sphaericus C3-41] gi|168991552|gb|ACA39092.1| Ribosomal RNA small subunit methyltransferase B [Lysinibacillus sphaericus C3-41] Length = 453 Score = 64.0 bits (155), Expect = 6e-09, Method: Composition-based stats. Identities = 16/92 (17%), Positives = 35/92 (38%), Gaps = 5/92 (5%) Query: 65 DLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVE 124 D + +G + K +D + + +D + +LR + ++ +P Sbjct: 48 DRALLTELTYGTLQHKMTLDYYLEPFIRGS-----IDHWVRWLLRISLYQMQYLTRIPAH 102 Query: 125 VIISEYVCIAHDFFYGDEPKFINAVLDKVSRK 156 ++E V IA + +N +L V R+ Sbjct: 103 AAVNEAVEIAKRRGHRGIASTVNGILRSVLRQ 134 >gi|315222002|ref|ZP_07863913.1| ribosomal RNA small subunit methyltransferase B [Streptococcus anginosus F0211] gi|315188968|gb|EFU22672.1| ribosomal RNA small subunit methyltransferase B [Streptococcus anginosus F0211] Length = 440 Score = 64.0 bits (155), Expect = 6e-09, Method: Composition-based stats. Identities = 30/143 (20%), Positives = 57/143 (39%), Gaps = 15/143 (10%) Query: 14 HRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVII 73 ++ AR A+ L E + Y A + +E D I+ Sbjct: 6 NKTKTARQTALAVL-----------EAVFSEGAYSNIALNQALLEVPLSSADKGLVTEIV 54 Query: 74 HGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCI 133 +G + RK ++ +S + ++ +LD L +L + +++ +P +++E V + Sbjct: 55 YGTVARKITLEWYLSHVIEDR---DKLDSWLYFLLLMSLYQILYLDKIPAHAVVNEAVEL 111 Query: 134 AHDFFYGDEPKFINAVLDKVSRK 156 A G KF NAVL + R Sbjct: 112 AKVRKKG-SEKFANAVLRGLLRD 133 >gi|85057607|ref|YP_456523.1| N utilization substance protein B [Aster yellows witches'-broom phytoplasma AYWB] gi|84789712|gb|ABC65444.1| N utilization substance protein B [Aster yellows witches'-broom phytoplasma AYWB] Length = 138 Score = 64.0 bits (155), Expect = 6e-09, Method: Composition-based stats. Identities = 33/159 (20%), Positives = 66/159 (41%), Gaps = 30/159 (18%) Query: 10 LKLSHRRGIARLA---AVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDL 66 +K + +RL ++ LYQ D + T + + Sbjct: 1 MKRPPNKKESRLLRIELMKLLYQYDFYQNNLT------------------LSQTNTNPIF 42 Query: 67 EWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVI 126 +F+ II + + ID +I+ L + +RL+ + +I+R EL+E ++ +I Sbjct: 43 TFFQKIIT----KLKFIDEIITKSLY-DYKINRLNKVDRAIIRLATYELLET-NISHAII 96 Query: 127 ISEYVCIAHDFF---YGDEPKFINAVLDKVSRKEEIKRS 162 I E + I F + KF N +LD++ R+ ++ + Sbjct: 97 IDEAIEITKQFCNLNDEKQHKFNNKLLDQIYRQLQMYKK 135 >gi|39998462|ref|NP_954413.1| Sun protein [Geobacter sulfurreducens PCA] gi|39985409|gb|AAR36763.1| Sun protein [Geobacter sulfurreducens PCA] gi|298507406|gb|ADI86129.1| 16S rRNA (5-methyl-C967)-methyltransferase [Geobacter sulfurreducens KN400] Length = 448 Score = 64.0 bits (155), Expect = 6e-09, Method: Composition-based stats. Identities = 28/127 (22%), Positives = 53/127 (41%), Gaps = 12/127 (9%) Query: 36 STTEIISEYETYRFCADTELDVE---SVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLT 92 S +I+ E R A+ +D E D +++GV+ R +D L Sbjct: 11 SAFDILVRIERERTFAEPLIDRELSGGALKGPDRGLLTELVYGVLRRTATLD-----YLV 65 Query: 93 EKWSFSRLDMILCSIL---RAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAV 149 + + +R + S+L R G+ ++ +PV ++E V +A + +NAV Sbjct: 66 DLFCATRAAKLERSVLILLRLGLYQIFFLDRIPVSAAVNETVTLARE-KSPRASGLVNAV 124 Query: 150 LDKVSRK 156 L + R+ Sbjct: 125 LRRSDRE 131 >gi|22297753|ref|NP_681000.1| RNA-binding protein [Thermosynechococcus elongatus BP-1] gi|22293930|dbj|BAC07762.1| RNA-binding protein [Thermosynechococcus elongatus BP-1] Length = 442 Score = 64.0 bits (155), Expect = 7e-09, Method: Composition-based stats. Identities = 23/144 (15%), Positives = 47/144 (32%), Gaps = 31/144 (21%) Query: 19 ARLAAVQAL-------YQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71 AR A+ L Y + +++ Y + D Sbjct: 5 ARRLALDTLERVAKGAY----ADVALHQVLQRYALH---------------GSDRTLVTE 45 Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131 +++G + +++ +D LI + + +LR G+ +L +P + V Sbjct: 46 LVYGTIRQQRTLDTLIQGFCRQLPPL----PVQL-VLRLGLYQLRYLDRIPAHAAVHSSV 100 Query: 132 CIAHDFFYGDEPKFINAVLDKVSR 155 + K +N VL + SR Sbjct: 101 ELVKQIGLEGFAKLVNGVLRRYSR 124 >gi|86605784|ref|YP_474547.1| ribosomal RNA small subunit methyltransferase B [Synechococcus sp. JA-3-3Ab] gi|86554326|gb|ABC99284.1| ribosomal RNA small subunit methyltransferase B [Synechococcus sp. JA-3-3Ab] Length = 448 Score = 64.0 bits (155), Expect = 7e-09, Method: Composition-based stats. Identities = 28/138 (20%), Positives = 48/138 (34%), Gaps = 13/138 (9%) Query: 19 ARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMD 78 AR A+ AL +I+ ++ + S + D +++G+ Sbjct: 3 ARQLALLALQKIERHNAYADVVLEHLLAH-----------SRLIPADCHLVSELVYGITR 51 Query: 79 RKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFF 138 R++ +D LI LD L IL G +L +P I V +A Sbjct: 52 RRRTLDALIDCFARRPAHQQPLD--LRLILYLGFYQLAFLDHIPPRAAIHTSVELARQVG 109 Query: 139 YGDEPKFINAVLDKVSRK 156 G +N +L R+ Sbjct: 110 LGSLTGVVNGILRAYQRQ 127 >gi|291534144|emb|CBL07257.1| Transcription termination factor [Megamonas hypermegale ART12/1] Length = 116 Score = 64.0 bits (155), Expect = 7e-09, Method: Composition-based stats. Identities = 16/117 (13%), Positives = 47/117 (40%), Gaps = 13/117 (11%) Query: 19 ARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMD 78 AR A+ L E+ ++ + Y + + ++ D + +++G + Sbjct: 3 AREVALNIL----------NEVYTQ-QAYANISLSRHLQKNQLSDQDRRFITELVYGTVK 51 Query: 79 RKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135 + ++ + ++++ + +ILR G+ +++ +P +E V +A Sbjct: 52 AGDTLLWILKKFVNR--PLNKIEPTIINILRLGIYQIVFMDKIPESAACNEAVNLAK 106 >gi|293391667|ref|ZP_06636001.1| methionyl-tRNA formyltransferase [Aggregatibacter actinomycetemcomitans D7S-1] gi|290952201|gb|EFE02320.1| methionyl-tRNA formyltransferase [Aggregatibacter actinomycetemcomitans D7S-1] Length = 451 Score = 64.0 bits (155), Expect = 7e-09, Method: Composition-based stats. Identities = 34/156 (21%), Positives = 62/156 (39%), Gaps = 23/156 (14%) Query: 10 LKLSHRRGIA-------RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYL 62 +K S + A R AAVQ L+Q+ G S + ++ D + V Sbjct: 1 MKTSKAKTSAETTALSARTAAVQILFQVLEQGKSLSSLL-------------PDAQVVIK 47 Query: 63 HVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVP 122 DL + I GV ++ +I+ + + I+ +L G+ +++ +P Sbjct: 48 AQDLPLLQEICFGVCRVLPRLEQIIAQLVDK--PLRGKKRIVHCLLLVGLYQILYTR-IP 104 Query: 123 VEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEE 158 V + E V A + +NAVL + R++E Sbjct: 105 VYAAVDEIVNTAKNLQLQSFQGLVNAVLRRFLREQE 140 >gi|256384049|gb|ACU78619.1| ribosomal RNA small subunit methyltransferase B [Mycoplasma mycoides subsp. capri str. GM12] gi|256384881|gb|ACU79450.1| ribosomal RNA small subunit methyltransferase B [Mycoplasma mycoides subsp. capri str. GM12] gi|296455325|gb|ADH21560.1| ribosomal RNA small subunit methyltransferase B [synthetic Mycoplasma mycoides JCVI-syn1.0] Length = 419 Score = 64.0 bits (155), Expect = 7e-09, Method: Composition-based stats. Identities = 24/95 (25%), Positives = 47/95 (49%), Gaps = 7/95 (7%) Query: 65 DLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILC-SILRAGVLELIECHSVPV 123 D ++ ++HGV+ K H+D L+ + K + I IL + ++I +S+P Sbjct: 37 DKDFVFNLVHGVISNKIHLDYLLGKLIDVKKT-----SIDLQIILLISLYQMIYLNSIPN 91 Query: 124 EVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEE 158 I++E + + + FINA+L+K R ++ Sbjct: 92 YAIVNESINLIKT-TSQKQANFINAILNKFLRFKD 125 >gi|313890028|ref|ZP_07823664.1| ribosomal RNA small subunit methyltransferase B [Streptococcus pseudoporcinus SPIN 20026] gi|313121619|gb|EFR44722.1| ribosomal RNA small subunit methyltransferase B [Streptococcus pseudoporcinus SPIN 20026] Length = 440 Score = 64.0 bits (155), Expect = 7e-09, Method: Composition-based stats. Identities = 29/140 (20%), Positives = 58/140 (41%), Gaps = 15/140 (10%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 + AR A+ A+ E I + Y A D I++G Sbjct: 6 KTKARGKALLAI-----------EDIFDNGAYSNIALNNQLSNHSVQDKDKGLITEIVYG 54 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135 + +K ++ +S + ++ +LD + +L + +++ +P I+++ V IA Sbjct: 55 TIAKKITLEWYLSHYVEDR---EKLDKWVYYLLMLSLYQMLYLEKIPSHAIVNDAVDIAK 111 Query: 136 DFFYGDEP-KFINAVLDKVS 154 + Y K+INA+L +VS Sbjct: 112 NRGYKRGAEKYINAILRQVS 131 >gi|332522158|ref|ZP_08398410.1| ribosomal RNA small subunit methyltransferase B [Streptococcus porcinus str. Jelinkova 176] gi|332313422|gb|EGJ26407.1| ribosomal RNA small subunit methyltransferase B [Streptococcus porcinus str. Jelinkova 176] Length = 440 Score = 64.0 bits (155), Expect = 8e-09, Method: Composition-based stats. Identities = 28/140 (20%), Positives = 57/140 (40%), Gaps = 15/140 (10%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 + AR A+ A+ E I + Y A D I++G Sbjct: 6 KTKARGKALLAI-----------EDIFDNGAYSNIALNNQLSNQSIQGKDKGLITEIVYG 54 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135 + +K ++ +S + ++ +LD + +L + +++ VP I+++ V IA Sbjct: 55 TIAKKITLEWYLSHYVEDR---EKLDKWVYYLLMLSLYQILYLEKVPSHAIVNDAVDIAK 111 Query: 136 DFFYGDEP-KFINAVLDKVS 154 + K+INA+L ++S Sbjct: 112 NRGNKRGAEKYINAILRQIS 131 >gi|306825761|ref|ZP_07459100.1| ribosomal RNA small subunit methyltransferase B [Streptococcus sp. oral taxon 071 str. 73H25AP] gi|304432122|gb|EFM35099.1| ribosomal RNA small subunit methyltransferase B [Streptococcus sp. oral taxon 071 str. 73H25AP] Length = 437 Score = 64.0 bits (155), Expect = 8e-09, Method: Composition-based stats. Identities = 31/139 (22%), Positives = 56/139 (40%), Gaps = 15/139 (10%) Query: 18 IARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVM 77 AR A+ L E + + Y A + S D I++G + Sbjct: 6 TARSLALAVL-----------EDVFVNQAYSNIALNKHLKGSHLSAADKGLVTEIVYGTV 54 Query: 78 DRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDF 137 RK ++ +S + ++ +LD L +L V ++ VP +++E V +A Sbjct: 55 ARKLTLEWYLSHFIEDR---DKLDNWLYVLLLMSVYQVRFLDKVPDHAVVNEAVELAKVR 111 Query: 138 FYGDEPKFINAVLDKVSRK 156 G K +NAVL ++ R+ Sbjct: 112 KQG-SEKLVNAVLRRILRE 129 >gi|304440678|ref|ZP_07400562.1| ribosomal RNA small subunit methyltransferase B [Peptoniphilus duerdenii ATCC BAA-1640] gi|304370865|gb|EFM24487.1| ribosomal RNA small subunit methyltransferase B [Peptoniphilus duerdenii ATCC BAA-1640] Length = 425 Score = 63.6 bits (154), Expect = 8e-09, Method: Composition-based stats. Identities = 27/141 (19%), Positives = 49/141 (34%), Gaps = 20/141 (14%) Query: 20 RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79 R A+Q L S+ +SE + + R I G + Sbjct: 12 RREALQIL-----KNVSSGAFLSEELNKSRSEN-------------IALLRNITTGSLRN 53 Query: 80 KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139 K ++D LI K F ++ + IL + + I +P I+ E V + + Sbjct: 54 KTYLDYLIKKN--SKIRFKKIHEDIRIILEMSLYQYIFLDGIPDYTIVDEAVKLTKKVSH 111 Query: 140 GDEPKFINAVLDKVSRKEEIK 160 F+N +L R ++ + Sbjct: 112 KGSVGFVNGLLRNFMRTKDFE 132 >gi|332364575|gb|EGJ42344.1| RNA methyltransferase Sun [Streptococcus sanguinis SK1059] Length = 438 Score = 63.6 bits (154), Expect = 8e-09, Method: Composition-based stats. Identities = 30/145 (20%), Positives = 60/145 (41%), Gaps = 15/145 (10%) Query: 12 LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71 + ++ AR ++ L E+ E + L+ +S+ D Sbjct: 1 MESKQKTARWQVLEIL----------EEVFEEGAYSNIALNRALN-QSLLSQADKGLVTE 49 Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131 +++G + RK ++ +S L E +LD L +L + +++ +P + E V Sbjct: 50 LVYGTVARKITLEWYLS-HLIEDR--DKLDNWLYILLMLSLYQMLYLDKIPQHAAVHEAV 106 Query: 132 CIAHDFFYGDEPKFINAVLDKVSRK 156 IA G KF+NA+L ++ R+ Sbjct: 107 EIAKIRKRG-SEKFVNALLRRIERE 130 >gi|149173494|ref|ZP_01852124.1| sun protein [Planctomyces maris DSM 8797] gi|148847676|gb|EDL62009.1| sun protein [Planctomyces maris DSM 8797] Length = 477 Score = 63.6 bits (154), Expect = 9e-09, Method: Composition-based stats. Identities = 30/139 (21%), Positives = 54/139 (38%), Gaps = 13/139 (9%) Query: 17 GIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGV 76 AR A L + ++ + ++E D I GV Sbjct: 31 RSARQLAFFLLEEYRRTDQFISDSMQQWERR-----------IDLSSADWRLAMEISIGV 79 Query: 77 MDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHD 136 + R+ +D +I S LT +++ L ++L+ G +L+ +P +SE V +A Sbjct: 80 VRRQLTLDTIIESQLTR--PREKVEAPLWTLLQIGAYQLVMLDQIPDHAAVSETVELAGK 137 Query: 137 FFYGDEPKFINAVLDKVSR 155 K +NA+L +SR Sbjct: 138 LQRVRWKKMVNAILRSISR 156 >gi|186684748|ref|YP_001867944.1| sun protein [Nostoc punctiforme PCC 73102] gi|186467200|gb|ACC83001.1| sun protein [Nostoc punctiforme PCC 73102] Length = 487 Score = 63.6 bits (154), Expect = 9e-09, Method: Composition-based stats. Identities = 20/95 (21%), Positives = 38/95 (40%), Gaps = 2/95 (2%) Query: 62 LHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSV 121 D +++G + R++ +D LI K L +IL G +L + Sbjct: 35 PDRDRRLVTELVYGSVRRQRTLDTLIDQFAKNKSHQQ--PQDLRTILHLGFYQLRYQERI 92 Query: 122 PVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRK 156 P ++ V +A + + F+N +L + RK Sbjct: 93 PASAAVNTTVQLAKENGFSGLTGFVNGLLRQYLRK 127 >gi|169824361|ref|YP_001691972.1| putative rRNA methylase [Finegoldia magna ATCC 29328] gi|167831166|dbj|BAG08082.1| putative rRNA methylase [Finegoldia magna ATCC 29328] Length = 423 Score = 63.6 bits (154), Expect = 9e-09, Method: Composition-based stats. Identities = 24/98 (24%), Positives = 43/98 (43%), Gaps = 7/98 (7%) Query: 59 SVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIEC 118 D+ + + + ++ + +D +IS C +RLD I+ ILR E++ Sbjct: 31 GDLDKRDIAYIKKCVFTEIENRFFVDYVISKC--SDLEINRLDKIVLEILRMATTEILFM 88 Query: 119 HSVPVEVIISEYVCIAHDFFYGDEPK-FINAVLDKVSR 155 + V+ E V +A K ++NAVL +V R Sbjct: 89 KTADYAVV-DEAVELA---GSITRYKDYVNAVLREVCR 122 >gi|81428305|ref|YP_395305.1| putative rRNA methytransferase (sun protein) [Lactobacillus sakei subsp. sakei 23K] gi|78609947|emb|CAI54994.1| Putative rRNA methytransferase (sun protein) [Lactobacillus sakei subsp. sakei 23K] Length = 447 Score = 63.6 bits (154), Expect = 9e-09, Method: Composition-based stats. Identities = 25/136 (18%), Positives = 55/136 (40%), Gaps = 14/136 (10%) Query: 20 RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79 R AV+ L I++ +Y A ++ ++ D + +++GV+ Sbjct: 7 RYLAVEIL-----------TAIAKQNSYSNLALDQVINKNRLNPQDAGFLTQLVYGVIQH 55 Query: 80 KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139 + +D ++ + + ++D + +LR V + + VP I E IA + Sbjct: 56 EYTLDYYLAPFIQK---PKKMDNWVRQVLRTAVYQQVYLDRVPEHAIFYEATEIAKKMGH 112 Query: 140 GDEPKFINAVLDKVSR 155 K + A+L ++ R Sbjct: 113 AGVSKLVTAILRQLQR 128 >gi|325001359|ref|ZP_08122471.1| ribosomal RNA small subunit methyltransferase [Pseudonocardia sp. P1] Length = 280 Score = 63.6 bits (154), Expect = 9e-09, Method: Composition-based stats. Identities = 30/142 (21%), Positives = 51/142 (35%), Gaps = 14/142 (9%) Query: 19 ARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMD 78 AR AA L + E E Y A + D + +G + Sbjct: 5 ARQAAYDLL-----------TAVREREAYANLALPGILRRYRLRDRDAALATELGYGTLR 53 Query: 79 RKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFF 138 + +D +I +C S+++ L LR G +L+ VP +S V + Sbjct: 54 AQGLLDTVIDACTDR--PLSKIEHPLLDALRLGAYQLL-RTRVPAHAAVSTCVELVRGDH 110 Query: 139 YGDEPKFINAVLDKVSRKEEIK 160 F+NAVL ++ +E + Sbjct: 111 GSQSAGFVNAVLRRIGEHDEAE 132 >gi|284991542|ref|YP_003410096.1| Fmu (Sun) domain-containing protein [Geodermatophilus obscurus DSM 43160] gi|284064787|gb|ADB75725.1| Fmu (Sun) domain protein [Geodermatophilus obscurus DSM 43160] Length = 460 Score = 63.6 bits (154), Expect = 9e-09, Method: Composition-based stats. Identities = 26/136 (19%), Positives = 51/136 (37%), Gaps = 12/136 (8%) Query: 19 ARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMD 78 ARL A L G S + + + + D+ D + + +G + Sbjct: 23 ARLTAFDVL-----DGVSGRDAYANLLLPQLLRERAADLGER----DAAFATQLAYGTLR 73 Query: 79 RKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFF 138 +D +++ ++ + LD + +LR G +L++ VP + V + Sbjct: 74 ATGTLDAVLAPLVSR--PLAELDPRVLDLLRLGAYQLLDLR-VPAHAAVDTTVALTRAIV 130 Query: 139 YGDEPKFINAVLDKVS 154 +NAVL KV+ Sbjct: 131 GTGASGLVNAVLRKVA 146 >gi|296140265|ref|YP_003647508.1| Fmu (Sun) domain protein [Tsukamurella paurometabola DSM 20162] gi|296028399|gb|ADG79169.1| Fmu (Sun) domain protein [Tsukamurella paurometabola DSM 20162] Length = 452 Score = 63.6 bits (154), Expect = 1e-08, Method: Composition-based stats. Identities = 31/140 (22%), Positives = 49/140 (35%), Gaps = 14/140 (10%) Query: 19 ARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMD 78 AR AA++ L + E Y L ++ D + + +G Sbjct: 5 ARRAALETL-----------AAVRERGAYANLVLPGLLRQARLTGRDAAFATELTYGACR 53 Query: 79 RKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFF 138 + +D +I S +D + LR GV +L+ V + E V Sbjct: 54 AQGLLDAVIEDA--SGRSVDEIDGPVLDALRLGVYQLL-RTRVGAHAAVDETVEAVKASS 110 Query: 139 YGDEPKFINAVLDKVSRKEE 158 F NAVL KVS+ +E Sbjct: 111 GRGAGGFANAVLRKVSKADE 130 >gi|159045573|ref|YP_001534367.1| ribosomal RNA small subunit methyltransferase B [Dinoroseobacter shibae DFL 12] gi|157913333|gb|ABV94766.1| ribosomal RNA small subunit methyltransferase B [Dinoroseobacter shibae DFL 12] Length = 443 Score = 63.6 bits (154), Expect = 1e-08, Method: Composition-based stats. Identities = 24/119 (20%), Positives = 42/119 (35%), Gaps = 13/119 (10%) Query: 40 IISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSR 99 ++SE + + + + + GV+ + D ++ L R Sbjct: 20 VLSERMSLADQTAHPKGPFAECAPAERARAQRLATGVLRHLRTCDQMLGPHL-------R 72 Query: 100 LDM--ILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDE--PKFINAVLDKVS 154 + + +ILR G EL P V+ V +A P +NAVL KV+ Sbjct: 73 MPPYPAIHNILRLGAYELCALGEAPHGVV-HAAVDLARA-EDPQSRAPGLVNAVLRKVA 129 >gi|256851318|ref|ZP_05556707.1| ribosomal RNA small subunit methyltransferase B [Lactobacillus jensenii 27-2-CHN] gi|260660742|ref|ZP_05861657.1| ribosomal RNA small subunit methyltransferase B [Lactobacillus jensenii 115-3-CHN] gi|282933237|ref|ZP_06338624.1| ribosomal RNA small subunit methyltransferase B [Lactobacillus jensenii 208-1] gi|297206188|ref|ZP_06923583.1| ribosomal RNA small subunit methyltransferase B [Lactobacillus jensenii JV-V16] gi|256616380|gb|EEU21568.1| ribosomal RNA small subunit methyltransferase B [Lactobacillus jensenii 27-2-CHN] gi|260548464|gb|EEX24439.1| ribosomal RNA small subunit methyltransferase B [Lactobacillus jensenii 115-3-CHN] gi|281302741|gb|EFA94956.1| ribosomal RNA small subunit methyltransferase B [Lactobacillus jensenii 208-1] gi|297149314|gb|EFH29612.1| ribosomal RNA small subunit methyltransferase B [Lactobacillus jensenii JV-V16] Length = 437 Score = 63.6 bits (154), Expect = 1e-08, Method: Composition-based stats. Identities = 19/107 (17%), Positives = 43/107 (40%), Gaps = 6/107 (5%) Query: 58 ESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIE 117 E+ + D + +++G + + ++ + L K L +L V +LI Sbjct: 33 ENNFSQKDQAFVTQLVYGTIQYQLFLEYQLKDLLRTKLKEDYLKP----LLLMSVYQLIF 88 Query: 118 CHSVPVEVIISEYVCIAHDFFYGDEPKF--INAVLDKVSRKEEIKRS 162 + VP ++ E +A F + + +N +L R+ ++ S Sbjct: 89 LNRVPNRAVLDEANKLAKSFGKKNSSGYRLVNGILRSFLRRGQVLPS 135 >gi|144899806|emb|CAM76670.1| Fmu (Sun)/eukaryotic nucleolar NOL1/Nop2p:Antitermination protein NusB [Magnetospirillum gryphiswaldense MSR-1] Length = 437 Score = 63.2 bits (153), Expect = 1e-08, Method: Composition-based stats. Identities = 26/125 (20%), Positives = 53/125 (42%), Gaps = 14/125 (11%) Query: 40 IISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSR 99 ++++ D+E + + D + R+++ + R ID +I+ C+ ++ Sbjct: 25 VLAQKRLLDETLDSEPRL-TKLAERDRAFTRMLVATTLRRLGQIDAVIARCIDRPLP-AK 82 Query: 100 LDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEP-----KFINAVLDKVS 154 + ++LR G +L+ P IS V +A + P K INAVL ++ Sbjct: 83 AGRV-RNMLRLGAAQLLF-LDTPPHAAISTTVDLAK-----NSPLAGFAKLINAVLRRLD 135 Query: 155 RKEEI 159 R+ Sbjct: 136 REGRA 140 >gi|288932240|ref|YP_003436300.1| Fmu (Sun) domain protein [Ferroglobus placidus DSM 10642] gi|288894488|gb|ADC66025.1| Fmu (Sun) domain protein [Ferroglobus placidus DSM 10642] Length = 446 Score = 63.2 bits (153), Expect = 1e-08, Method: Composition-based stats. Identities = 27/142 (19%), Positives = 53/142 (37%), Gaps = 6/142 (4%) Query: 32 IIGCSTTEIISEYETYRFCADTELDVESVYLHVDLE---WFRVIIHGVMDRKQHIDLLIS 88 + EI+ + + L + +VD + + V R+ ID ++ Sbjct: 12 VNQEIAAEILEKLDKEVISEKELLRRFFLGKNVDYKIRGAVHAYVMEVSKRRNVIDFILE 71 Query: 89 SCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINA 148 L K + + ++LR E+ VP + V IA F F+NA Sbjct: 72 KALKPK-KLEDVKPFVRNLLRIATYEI-FFKKVPPALATDCAVRIAKKRFGIKAASFVNA 129 Query: 149 VLDKVSRKEEIKRSGCVSAITQ 170 +L K + + ++K+ + T+ Sbjct: 130 ILRK-AERVDLKKEMEKLSRTK 150 >gi|256392286|ref|YP_003113850.1| Fmu (Sun) domain-containing protein [Catenulispora acidiphila DSM 44928] gi|256358512|gb|ACU72009.1| Fmu (Sun) domain protein [Catenulispora acidiphila DSM 44928] Length = 493 Score = 63.2 bits (153), Expect = 1e-08, Method: Composition-based stats. Identities = 27/138 (19%), Positives = 51/138 (36%), Gaps = 14/138 (10%) Query: 18 IARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVM 77 AR AA++ L E + + Y L + D + + +G + Sbjct: 12 QARAAALEVL-----------EAVRTRDAYANLLLPRLLRDRGLSGRDAAFTTELSYGTL 60 Query: 78 DRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDF 137 D +I++C+ +D ++ LR G +L+ VP +S V + Sbjct: 61 RGLGTYDAIIAACVDR--DLDAVDPVVLDALRIGAHQLLAM-DVPPHAAVSTTVDLVRSV 117 Query: 138 FYGDEPKFINAVLDKVSR 155 +F NA+L +V + Sbjct: 118 SNEGASRFANAILRRVGQ 135 >gi|162456172|ref|YP_001618539.1| Sun protein [Sorangium cellulosum 'So ce 56'] gi|161166754|emb|CAN98059.1| Sun protein [Sorangium cellulosum 'So ce 56'] Length = 496 Score = 63.2 bits (153), Expect = 1e-08, Method: Composition-based stats. Identities = 23/108 (21%), Positives = 42/108 (38%), Gaps = 4/108 (3%) Query: 52 DTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEK-WSFSRLDMILCSILRA 110 D EL D+ +++GV+ + ++ I+ + W+ D ++ + + Sbjct: 53 DAELRRAPALDPRDIGLATELVYGVLRAQAALEARIAEFAAKSRWT---ADPLVRAHVLM 109 Query: 111 GVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEE 158 G L VP +SE V A F NAVL +++ E Sbjct: 110 GAYSLCFLDRVPSFAAVSEAVDGAQAAGGPRVGAFANAVLRRLAAAVE 157 >gi|296110622|ref|YP_003621003.1| rRNA methylase (putative) [Leuconostoc kimchii IMSNU 11154] gi|295832153|gb|ADG40034.1| rRNA methylase (putative) [Leuconostoc kimchii IMSNU 11154] Length = 457 Score = 63.2 bits (153), Expect = 1e-08, Method: Composition-based stats. Identities = 23/148 (15%), Positives = 57/148 (38%), Gaps = 19/148 (12%) Query: 12 LSHRRGIA---RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEW 68 +S +R + R+ AVQ L + Y ++ + D Sbjct: 1 MSDKRVYSDNPRVLAVQTL------------AKIKNGAYSNLQLNQVIKQHQLGEADKRL 48 Query: 69 FRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIIS 128 +++GV+ + + ++ + K ++D + +L + ++ +P I + Sbjct: 49 LTTLVYGVIQHRLTFEYWLTPFIGNK----KIDAWVRELLYTAMFQMEFLDKIPEHAIFN 104 Query: 129 EYVCIAHDFFYGDEPKFINAVLDKVSRK 156 E + +A + KF+ A+L ++R+ Sbjct: 105 ESIEVAKILGHVGTGKFVTAILHNIARQ 132 >gi|215403254|ref|ZP_03415435.1| fmu protein (sun protein) [Mycobacterium tuberculosis 02_1987] gi|289745158|ref|ZP_06504536.1| sun protein [Mycobacterium tuberculosis 02_1987] gi|289685686|gb|EFD53174.1| sun protein [Mycobacterium tuberculosis 02_1987] Length = 768 Score = 63.2 bits (153), Expect = 1e-08, Method: Composition-based stats. Identities = 31/152 (20%), Positives = 55/152 (36%), Gaps = 14/152 (9%) Query: 19 ARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMD 78 AR AA + L +S + Y L + D + + +G Sbjct: 327 ARRAAFETL-----------RAVSARDAYANLVLPALLAQRGIGGRDAAFATELTYGTCR 375 Query: 79 RKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFF 138 + +D +I + S +D +L +LR G +L+ V +S V A F Sbjct: 376 ARGLLDAVIGAAAER--SPQAIDPVLLDLLRLGTYQLL-RTRVDAHAAVSTTVEQAGIEF 432 Query: 139 YGDEPKFINAVLDKVSRKEEIKRSGCVSAITQ 170 F+N VL ++ ++E G ++ Q Sbjct: 433 DSARAGFVNGVLRTIAGRDERSWVGELAPDAQ 464 >gi|225461943|ref|XP_002266112.1| PREDICTED: hypothetical protein [Vitis vinifera] gi|296089930|emb|CBI39749.3| unnamed protein product [Vitis vinifera] Length = 525 Score = 63.2 bits (153), Expect = 1e-08, Method: Composition-based stats. Identities = 23/88 (26%), Positives = 42/88 (47%), Gaps = 1/88 (1%) Query: 71 VIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEY 130 I+ G + ++++D LI S + +F ++ +L ILR G E++ P V+ E Sbjct: 116 DIVGGSIRWRRYLDHLIVSLCHDSKTFRSMEPLLLQILRIGFYEIVNLDMPPYAVV-DEN 174 Query: 131 VCIAHDFFYGDEPKFINAVLDKVSRKEE 158 V +A +NA+L K+ +E Sbjct: 175 VRLAKVALRPGAGNMVNAILRKLVLLKE 202 >gi|147837899|emb|CAN67145.1| hypothetical protein VITISV_042360 [Vitis vinifera] Length = 324 Score = 63.2 bits (153), Expect = 1e-08, Method: Composition-based stats. Identities = 23/88 (26%), Positives = 42/88 (47%), Gaps = 1/88 (1%) Query: 71 VIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEY 130 I+ G + ++++D LI S + +F ++ +L ILR G E++ P V+ E Sbjct: 116 DIVGGSIRWRRYLDHLIVSLCHDSKTFRSMEPLLLQILRIGFYEIVNLDMPPYAVV-DEN 174 Query: 131 VCIAHDFFYGDEPKFINAVLDKVSRKEE 158 V +A +NA+L K+ +E Sbjct: 175 VRLAKVALRPGAANMVNAILRKLVLLKE 202 >gi|195978660|ref|YP_002123904.1| 16S rRNA m(5)C 967 methyltransferase RsmB [Streptococcus equi subsp. zooepidemicus MGCS10565] gi|195975365|gb|ACG62891.1| 16S rRNA m(5)C 967 methyltransferase RsmB [Streptococcus equi subsp. zooepidemicus MGCS10565] Length = 442 Score = 63.2 bits (153), Expect = 1e-08, Method: Composition-based stats. Identities = 30/139 (21%), Positives = 57/139 (41%), Gaps = 9/139 (6%) Query: 37 TTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWS 96 E I ++ Y A D I++G + RK ++ ++ + ++ Sbjct: 18 IVEDIFDHGAYSNLALKHQLANQSLSDKDKALVTEIVYGTISRKITLEWYLAHYIEDR-- 75 Query: 97 FSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEP-KFINAVLDKVSR 155 RLD + +L + +L VP I+++ V +A +G K +NAVL +++ Sbjct: 76 -DRLDKWVYYLLMLSLYQLAYLDKVPAHAIVNDAVNLAKARAHGRGADKLVNAVLRQLTN 134 Query: 156 K-----EEIKRSGCVSAIT 169 K + IKR A+ Sbjct: 135 KPLPDIKSIKRKNKYYAVA 153 >gi|148544395|ref|YP_001271765.1| sun protein [Lactobacillus reuteri DSM 20016] gi|184153759|ref|YP_001842100.1| rRNA methylase [Lactobacillus reuteri JCM 1112] gi|227363180|ref|ZP_03847314.1| rRNA SAM-dependent methyltransferase RmsB [Lactobacillus reuteri MM2-3] gi|325682715|ref|ZP_08162231.1| RNA methyltransferase Sun [Lactobacillus reuteri MM4-1A] gi|148531429|gb|ABQ83428.1| sun protein [Lactobacillus reuteri DSM 20016] gi|183225103|dbj|BAG25620.1| rRNA methylase [Lactobacillus reuteri JCM 1112] gi|227071786|gb|EEI10075.1| rRNA SAM-dependent methyltransferase RmsB [Lactobacillus reuteri MM2-3] gi|324977065|gb|EGC14016.1| RNA methyltransferase Sun [Lactobacillus reuteri MM4-1A] Length = 449 Score = 63.2 bits (153), Expect = 1e-08, Method: Composition-based stats. Identities = 32/147 (21%), Positives = 55/147 (37%), Gaps = 15/147 (10%) Query: 10 LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF 69 +K + AR A+ AL E + E Y +L + D Sbjct: 1 MKTKFQPQNARELALVAL-----------EGVVENGAYSNLQVDQLLKKYPLADKDRRLA 49 Query: 70 RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISE 129 II+GV+ K ++ ++ + K RLD + ++L + + + VP + E Sbjct: 50 TNIIYGVLQHKLTLEYWLNGFIQGK----RLDPWVKTLLLSALYQYHYLERVPDWAVTDE 105 Query: 130 YVCIAHDFFYGDEPKFINAVLDKVSRK 156 + IA KF+ VL + RK Sbjct: 106 SIEIAKRRGNPGIRKFVTGVLHAILRK 132 >gi|319442113|ref|ZP_07991269.1| putative tRNA and rRNA cytosine-C5-methylase [Corynebacterium variabile DSM 44702] Length = 525 Score = 63.2 bits (153), Expect = 1e-08, Method: Composition-based stats. Identities = 16/98 (16%), Positives = 35/98 (35%), Gaps = 3/98 (3%) Query: 58 ESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIE 117 E D + + +G + + +D +I+ ++D ++ LR G +++ Sbjct: 96 EQKIHGRDAAFATELTYGTLRMQGLLDAVIAEA--AGRPVDKIDAVVLDALRLGAYQIL- 152 Query: 118 CHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSR 155 V + V + F N VL ++R Sbjct: 153 RTRVDDHAAVDTTVELVKANGEAKASGFTNGVLRTLTR 190 >gi|328945030|gb|EGG39186.1| RNA methyltransferase Sun [Streptococcus sanguinis SK1087] Length = 438 Score = 62.8 bits (152), Expect = 1e-08, Method: Composition-based stats. Identities = 32/145 (22%), Positives = 58/145 (40%), Gaps = 15/145 (10%) Query: 12 LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71 + ++ AR A++ L E+ E Y A +S D Sbjct: 1 MESKQKTARWQALEIL----------EEVFEE-GAYSNIALNRALSQSPLSQADKGLVTE 49 Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131 +++G + RK ++ +S L E +LD L +L + +++ +P + E V Sbjct: 50 LVYGTVARKITLEWYLS-HLIEDR--DKLDNWLYILLMLSLYQMLYLDKIPQHAAVHEAV 106 Query: 132 CIAHDFFYGDEPKFINAVLDKVSRK 156 IA G KF NA+L ++ R+ Sbjct: 107 EIAKIRKRG-SEKFANALLRRIERE 130 >gi|299535921|ref|ZP_07049241.1| ribosomal RNA small subunit methyltransferase B [Lysinibacillus fusiformis ZC1] gi|298728673|gb|EFI69228.1| ribosomal RNA small subunit methyltransferase B [Lysinibacillus fusiformis ZC1] Length = 453 Score = 62.8 bits (152), Expect = 1e-08, Method: Composition-based stats. Identities = 17/91 (18%), Positives = 34/91 (37%), Gaps = 5/91 (5%) Query: 65 DLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVE 124 D I +G + K +D + + +D + +LR + ++ +P Sbjct: 48 DRALLTEITYGTLQYKMTLDYYLEPFIRSS-----IDHWVRWLLRISLYQIHYLTRIPPH 102 Query: 125 VIISEYVCIAHDFFYGDEPKFINAVLDKVSR 155 ++E V IA + +N +L V R Sbjct: 103 AAVNEAVEIAKRRGHRGIASMVNGILRSVLR 133 >gi|225871064|ref|YP_002747011.1| ribosomal RNA small subunit methyltransferase [Streptococcus equi subsp. equi 4047] gi|225700468|emb|CAW94888.1| putative ribosomal RNA small subunit methyltransferase [Streptococcus equi subsp. equi 4047] Length = 442 Score = 62.8 bits (152), Expect = 1e-08, Method: Composition-based stats. Identities = 30/139 (21%), Positives = 57/139 (41%), Gaps = 9/139 (6%) Query: 37 TTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWS 96 E I ++ Y A D I++G + RK ++ ++ + ++ Sbjct: 18 IVEDIFDHGAYSNLALKHQLANQFLSDKDKALVTEIVYGTISRKITLEWYLAHYIEDR-- 75 Query: 97 FSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEP-KFINAVLDKVSR 155 RLD + +L + +L VP I+++ V +A +G K +NAVL +++ Sbjct: 76 -DRLDKWVYYLLMLSLYQLAYLDKVPAHAIVNDAVNLAKARAHGRGADKLVNAVLRQLTN 134 Query: 156 K-----EEIKRSGCVSAIT 169 K + IKR A+ Sbjct: 135 KPLPDIKSIKRKNKYYAVA 153 >gi|295425221|ref|ZP_06817924.1| ribosomal RNA small subunit methyltransferase B [Lactobacillus amylolyticus DSM 11664] gi|295064997|gb|EFG55902.1| ribosomal RNA small subunit methyltransferase B [Lactobacillus amylolyticus DSM 11664] Length = 447 Score = 62.8 bits (152), Expect = 1e-08, Method: Composition-based stats. Identities = 22/102 (21%), Positives = 42/102 (41%), Gaps = 14/102 (13%) Query: 64 VDLEWFRVIIHGVMDRKQHID----LLISSCLTEKWSFSRLDMILCSILRAGVLELIECH 119 D I++G + K +++ LI S +TEK+ L +L +++ Sbjct: 47 ADQNLATKIVYGTIQYKIYLEYQLHDLIKSKITEKY--------LKPLLLMSAYQILFLD 98 Query: 120 SVPVEVIISEYVCIAHDFFYGDEPKF--INAVLDKVSRKEEI 159 VP ++ E +A F F +N +L ++R+ I Sbjct: 99 KVPNRAVLDEANKLAKQFGKKHSSGFRLVNGILRSLTRRGPI 140 >gi|71894340|ref|YP_278448.1| hypothetical protein MS53_0324 [Mycoplasma synoviae 53] gi|71851128|gb|AAZ43737.1| hypothetical protein MS53_0324 [Mycoplasma synoviae 53] Length = 156 Score = 62.8 bits (152), Expect = 1e-08, Method: Composition-based stats. Identities = 30/161 (18%), Positives = 60/161 (37%), Gaps = 34/161 (21%) Query: 11 KLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFR 70 K +R R+ +Q LYQ+++ ++ + + F + E +++ Sbjct: 5 KPKTQRQK-RIEKIQILYQVEL--------LNLQKDFDFVLNMEPYLDAKQTKE------ 49 Query: 71 VIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEY 130 + V+ + + S L W++ RL +L +IL E + ++I+E Sbjct: 50 --VFVVLKNYDYFKNFLESLLDPSWNWQRLSYMLRAILLNACAEFEF---IDARIVINEA 104 Query: 131 VCIAHDFF---YGDEP-----------KFINAVLDKVSRKE 157 V I FF KF NA+L+ + + Sbjct: 105 VEITKIFFQLTSDTSAKEYNSIDYNLFKFTNALLETYYKTK 145 >gi|300173591|ref|YP_003772757.1| ribosomal RNA small subunit methyltransferase B [Leuconostoc gasicomitatum LMG 18811] gi|299887970|emb|CBL91938.1| ribosomal RNA small subunit methyltransferase B [Leuconostoc gasicomitatum LMG 18811] Length = 453 Score = 62.8 bits (152), Expect = 1e-08, Method: Composition-based stats. Identities = 22/148 (14%), Positives = 58/148 (39%), Gaps = 19/148 (12%) Query: 12 LSHRRGIA---RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEW 68 +S +R + R+ AVQ L + Y ++ + D Sbjct: 1 MSDKRVYSDNPRVLAVQTL------------AKIKNGAYSNLQLNQVIKQHQLSEADKRL 48 Query: 69 FRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIIS 128 +++GV+ + + ++ + +K ++D + +L + + ++ +P I + Sbjct: 49 LTTLVYGVIQHRMTFEYWLAPFVGDK----KIDAWVRELLYSAIFQMKFLDKIPEHAIFN 104 Query: 129 EYVCIAHDFFYGDEPKFINAVLDKVSRK 156 E + +A + K++ A+L + R+ Sbjct: 105 ESIEVAKILGHVGTGKYVTAILHNIGRQ 132 >gi|301321426|gb|ADK70069.1| ribosomal RNA small subunit methyltransferase B [Mycoplasma mycoides subsp. mycoides SC str. Gladysdale] Length = 423 Score = 62.8 bits (152), Expect = 1e-08, Method: Composition-based stats. Identities = 24/94 (25%), Positives = 47/94 (50%), Gaps = 7/94 (7%) Query: 66 LEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILC-SILRAGVLELIECHSVPVE 124 ++ ++HGV+ K H+D L++ + K + I IL + ++I +S+P Sbjct: 38 KDFIFNLVHGVISNKIHLDYLLTKLIDVKKT-----SIDLQIILLISLYQMIYLNSIPNY 92 Query: 125 VIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEE 158 I++E V + + FINA+L+K R ++ Sbjct: 93 AIVNESVNLIKT-TSQKQANFINAILNKFLRFKD 125 >gi|322388304|ref|ZP_08061908.1| RNA methyltransferase Sun [Streptococcus infantis ATCC 700779] gi|321140976|gb|EFX36477.1| RNA methyltransferase Sun [Streptococcus infantis ATCC 700779] Length = 437 Score = 62.8 bits (152), Expect = 2e-08, Method: Composition-based stats. Identities = 30/139 (21%), Positives = 56/139 (40%), Gaps = 15/139 (10%) Query: 18 IARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVM 77 AR A++ L E + + Y A + S D +++G + Sbjct: 6 TARNLALKVL-----------EDVFVNQAYSNIALNKHLKGSQLSATDKGLVTELVYGTV 54 Query: 78 DRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDF 137 RK ++ +S + ++ +LD L +L V +L +P +++E V IA Sbjct: 55 ARKLTLEWYLSHFIEDR---DKLDSWLYILLLMSVYQLEYLDKLPDHAVVNESVEIAK-L 110 Query: 138 FYGDEPKFINAVLDKVSRK 156 K +NAVL ++ R+ Sbjct: 111 RKKGSEKLVNAVLRRILRE 129 >gi|332358059|gb|EGJ35892.1| RNA methyltransferase Sun [Streptococcus sanguinis SK1056] Length = 438 Score = 62.8 bits (152), Expect = 2e-08, Method: Composition-based stats. Identities = 31/145 (21%), Positives = 58/145 (40%), Gaps = 15/145 (10%) Query: 12 LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71 + ++ AR A++ L E+ E Y A +S D Sbjct: 1 MESKQKTARWQALEIL----------EEVFEE-GAYSNIALNRALSQSPLSQADKGLVTE 49 Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131 +++G + RK ++ +S L E +LD L +L + +++ +P + E + Sbjct: 50 LVYGTVARKITLEWYLS-HLIEDR--DKLDNWLYILLMLSLYQMLYLDKIPQHAAVHEAI 106 Query: 132 CIAHDFFYGDEPKFINAVLDKVSRK 156 IA G KF NA+L ++ R+ Sbjct: 107 EIAKIRKRG-SEKFANALLRRIERE 130 >gi|42560767|ref|NP_975218.1| Sun family protein [Mycoplasma mycoides subsp. mycoides SC str. PG1] gi|42492263|emb|CAE76860.1| Sun family protein [Mycoplasma mycoides subsp. mycoides SC str. PG1] Length = 432 Score = 62.8 bits (152), Expect = 2e-08, Method: Composition-based stats. Identities = 24/94 (25%), Positives = 47/94 (50%), Gaps = 7/94 (7%) Query: 66 LEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILC-SILRAGVLELIECHSVPVE 124 ++ ++HGV+ K H+D L++ + K + I IL + ++I +S+P Sbjct: 47 KDFIFNLVHGVISNKIHLDYLLTKLIDVKKT-----SIDLQIILLISLYQMIYLNSIPNY 101 Query: 125 VIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEE 158 I++E V + + FINA+L+K R ++ Sbjct: 102 AIVNESVNLIKT-TSQKQANFINAILNKFLRFKD 134 >gi|324991771|gb|EGC23703.1| RNA methyltransferase Sun [Streptococcus sanguinis SK353] Length = 438 Score = 62.8 bits (152), Expect = 2e-08, Method: Composition-based stats. Identities = 31/145 (21%), Positives = 58/145 (40%), Gaps = 15/145 (10%) Query: 12 LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71 + ++ AR A++ L E+ E Y A +S D Sbjct: 1 MESKQKTARWQALEIL----------EEVFEE-GAYSNIALNRALSQSPLSQADKGLVTE 49 Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131 +++G + RK ++ +S L E +LD L +L + +++ +P + E + Sbjct: 50 LVYGTVARKITLEWYLS-HLIEDR--DKLDNWLYILLMLSLYQMLYLDKIPQHAAVHEAI 106 Query: 132 CIAHDFFYGDEPKFINAVLDKVSRK 156 IA G KF NA+L ++ R+ Sbjct: 107 EIAKIRKRG-SEKFANALLRRIERE 130 >gi|282882115|ref|ZP_06290756.1| ribosomal RNA small subunit methyltransferase B [Peptoniphilus lacrimalis 315-B] gi|281298145|gb|EFA90600.1| ribosomal RNA small subunit methyltransferase B [Peptoniphilus lacrimalis 315-B] Length = 430 Score = 62.8 bits (152), Expect = 2e-08, Method: Composition-based stats. Identities = 22/101 (21%), Positives = 45/101 (44%), Gaps = 2/101 (1%) Query: 58 ESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIE 117 +S D + + I GV+ + ++D +I + K F ++ I+ IL + + Sbjct: 31 QSNISDRDFTFIKNITTGVIRNRTYLDYVIK--INSKIRFKKIHKIIAIILEMAIYQYYF 88 Query: 118 CHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEE 158 +P I+ E V +A + F+NA+L + K++ Sbjct: 89 LDKIPNYSIVDESVKLAKLYGNKGSSSFVNAILRNIVSKDK 129 >gi|325686917|gb|EGD28941.1| RNA methyltransferase Sun [Streptococcus sanguinis SK72] gi|327467211|gb|EGF12715.1| RNA methyltransferase Sun [Streptococcus sanguinis SK330] Length = 438 Score = 62.8 bits (152), Expect = 2e-08, Method: Composition-based stats. Identities = 31/145 (21%), Positives = 58/145 (40%), Gaps = 15/145 (10%) Query: 12 LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71 + ++ AR A++ L E+ E Y A +S D Sbjct: 1 MESKQKTARWQALEIL----------EEVFEE-GAYSNIALNRALSQSPLSQADKGLVTE 49 Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131 +++G + RK ++ +S L E +LD L +L + +++ +P + E + Sbjct: 50 LVYGTVARKITLEWYLS-HLIEDR--DKLDNWLYILLMLSLYQMLYLDKIPQHAAVHEAI 106 Query: 132 CIAHDFFYGDEPKFINAVLDKVSRK 156 IA G KF NA+L ++ R+ Sbjct: 107 EIAKIRKRG-SEKFANALLRRIERE 130 >gi|306829015|ref|ZP_07462206.1| ribosomal RNA small subunit methyltransferase B [Streptococcus mitis ATCC 6249] gi|304428820|gb|EFM31909.1| ribosomal RNA small subunit methyltransferase B [Streptococcus mitis ATCC 6249] Length = 437 Score = 62.8 bits (152), Expect = 2e-08, Method: Composition-based stats. Identities = 36/157 (22%), Positives = 61/157 (38%), Gaps = 20/157 (12%) Query: 18 IARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVM 77 AR A+ L E + + Y A + S D I++G + Sbjct: 6 TARNLALAVL-----------EDVFVNQAYSNIALNKHLKGSQLSAADKGLVTEIVYGTV 54 Query: 78 DRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDF 137 RK ++ +S + ++ +LD L +L ++ VP +++E V IA Sbjct: 55 ARKLTLEWYLSHFIQDR---DKLDNWLYVLLLMSAYQVRFLDKVPDHAVVNEAVEIAKAR 111 Query: 138 FYGDEPKFINAVLDKVSRK-----EEIKRSGCVSAIT 169 G K +NAVL ++ R+ E IKR +I Sbjct: 112 KKG-SEKLVNAVLRRILREGWPDFETIKRKNKRDSIA 147 >gi|194466505|ref|ZP_03072492.1| sun protein [Lactobacillus reuteri 100-23] gi|194453541|gb|EDX42438.1| sun protein [Lactobacillus reuteri 100-23] Length = 449 Score = 62.8 bits (152), Expect = 2e-08, Method: Composition-based stats. Identities = 32/147 (21%), Positives = 55/147 (37%), Gaps = 15/147 (10%) Query: 10 LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF 69 +K + AR A+ AL E + E Y +L + D Sbjct: 1 MKTKFQPQNARELALVAL-----------EGVVENGAYSNLQVDQLLKKYPLADKDRRLA 49 Query: 70 RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISE 129 II+GV+ K ++ ++ + K RLD + ++L + + + VP + E Sbjct: 50 TNIIYGVLQHKLTLEYWLNGFVQGK----RLDPWVKTLLLSALYQYHYLERVPDWAVTDE 105 Query: 130 YVCIAHDFFYGDEPKFINAVLDKVSRK 156 + IA KF+ VL + RK Sbjct: 106 SIEIAKRRGNPGIRKFVTGVLHAILRK 132 >gi|168011444|ref|XP_001758413.1| predicted protein [Physcomitrella patens subsp. patens] gi|162690448|gb|EDQ76815.1| predicted protein [Physcomitrella patens subsp. patens] Length = 207 Score = 62.8 bits (152), Expect = 2e-08, Method: Composition-based stats. Identities = 33/185 (17%), Positives = 57/185 (30%), Gaps = 47/185 (25%) Query: 17 GIARLAAVQALYQIDIIGCST--------------------------------TEIISEY 44 AR A+ LY + G ++ E Sbjct: 24 RAARELALSVLYAAFVSGVHPLKVFEDRVKQRVVANSFDKTLLEGYEHRPDVGENVVVED 83 Query: 45 ETYRFCADTELDVES-------------VYLHVDLEWFRVIIHGVMDRKQHIDLLISSCL 91 E + LD E+ VY L R ++ R + ++ + Sbjct: 84 EATAMALEEALDAEASLEASVLTAPPPLVYNSFALRLARTLVKETAYRWLQQEAILMEII 143 Query: 92 TEKWSFS-RLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVL 150 KW + ++ +L+ + E+ E VP V+++E V +A F P+ IN L Sbjct: 144 PLKWKVQPKAALLQICVLQMALAEI-EATDVPPRVVVNEAVELAKRFCDLAAPRIINGCL 202 Query: 151 DKVSR 155 R Sbjct: 203 GSYIR 207 >gi|324994072|gb|EGC25986.1| RNA methyltransferase Sun [Streptococcus sanguinis SK678] gi|327459278|gb|EGF05624.1| RNA methyltransferase Sun [Streptococcus sanguinis SK1] gi|327472704|gb|EGF18131.1| RNA methyltransferase Sun [Streptococcus sanguinis SK408] gi|327490496|gb|EGF22277.1| RNA methyltransferase Sun [Streptococcus sanguinis SK1058] Length = 438 Score = 62.8 bits (152), Expect = 2e-08, Method: Composition-based stats. Identities = 30/145 (20%), Positives = 60/145 (41%), Gaps = 15/145 (10%) Query: 12 LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71 + ++ AR ++ L E+ E + L+ +S+ D Sbjct: 1 MESKQKTARWQVLEIL----------EEVFEEGAYSNIALNRALN-QSLLSQADKGLVTE 49 Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131 +++G + RK ++ +S L E +LD L +L + +++ +P + E V Sbjct: 50 LVYGTVARKITLEWYLS-HLIEDR--DKLDNWLYILLMLSLYQMLYLDKIPQHATVHEAV 106 Query: 132 CIAHDFFYGDEPKFINAVLDKVSRK 156 IA G KF+NA+L ++ R+ Sbjct: 107 EIAKIRKRG-SEKFVNALLRRIERE 130 >gi|225868018|ref|YP_002743966.1| ribosomal RNA small subunit methyltransferase [Streptococcus equi subsp. zooepidemicus] gi|225701294|emb|CAW98294.1| putative ribosomal RNA small subunit methyltransferase [Streptococcus equi subsp. zooepidemicus] Length = 442 Score = 62.4 bits (151), Expect = 2e-08, Method: Composition-based stats. Identities = 30/139 (21%), Positives = 57/139 (41%), Gaps = 9/139 (6%) Query: 37 TTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWS 96 E I ++ Y A D I++G + RK ++ ++ + ++ Sbjct: 18 IVEDIFDHGAYSNLALKHQLANQSLSDKDKALVTEIVYGTISRKITLEWYLAHYIEDR-- 75 Query: 97 FSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEP-KFINAVLDKVSR 155 RLD + +L + +L VP I+++ V +A +G K +NAVL +++ Sbjct: 76 -DRLDKWVYYLLMLSLYQLAYLDKVPAHAIVNDAVNLAKARTHGRGADKLVNAVLRQLTN 134 Query: 156 K-----EEIKRSGCVSAIT 169 K + IKR A+ Sbjct: 135 KPLPDIKSIKRKNKYYAVA 153 >gi|332710036|ref|ZP_08429991.1| ribosomal RNA small subunit methyltransferase RsmB [Lyngbya majuscula 3L] gi|332351179|gb|EGJ30764.1| ribosomal RNA small subunit methyltransferase RsmB [Lyngbya majuscula 3L] Length = 477 Score = 62.4 bits (151), Expect = 2e-08, Method: Composition-based stats. Identities = 23/136 (16%), Positives = 49/136 (36%), Gaps = 13/136 (9%) Query: 20 RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79 R A AL I + A + + D +++G + R Sbjct: 15 RQLAFLAL-----------RDIHRRGAFADIALNRVLHNAQLTGADRGLVTELVYGSVRR 63 Query: 80 KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139 ++ +D L+ +K ++ L +IL G+ +L +P ++ V +A + + Sbjct: 64 QRTLDALLDQLGKKK--ANQQPPDLRTILHLGLYQLRYQGRIPASAAVNTTVDLAKNNGF 121 Query: 140 GDEPKFINAVLDKVSR 155 +N +L +R Sbjct: 122 KGLAGVVNGLLRNYAR 137 >gi|191638611|ref|YP_001987777.1| RRNA methylase (Putative) [Lactobacillus casei BL23] gi|190712913|emb|CAQ66919.1| RRNA methylase (Putative) [Lactobacillus casei BL23] gi|327382653|gb|AEA54129.1| Ribosomal RNA small subunit methyltransferase B [Lactobacillus casei LC2W] gi|327385847|gb|AEA57321.1| Ribosomal RNA small subunit methyltransferase B [Lactobacillus casei BD-II] Length = 446 Score = 62.4 bits (151), Expect = 2e-08, Method: Composition-based stats. Identities = 18/106 (16%), Positives = 41/106 (38%), Gaps = 5/106 (4%) Query: 65 DLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVE 124 D I++GV+ + +D ++ + + +LD + +L V +L VP Sbjct: 41 DAGLLTNIVYGVIQHQLTLDFYLAPFIKGR----KLDNWIRCLLDIAVYQLQYLDKVPAR 96 Query: 125 VIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRSGCVSAITQ 170 + + IA + KF+ VL +++ ++ + Sbjct: 97 AVFFDSTEIAKKLGHQGIAKFVTGVLRN-AQRTGFPDPAAIADPVK 141 >gi|256832544|ref|YP_003161271.1| Fmu (Sun) domain-containing protein [Jonesia denitrificans DSM 20603] gi|256686075|gb|ACV08968.1| Fmu (Sun) domain protein [Jonesia denitrificans DSM 20603] Length = 517 Score = 62.4 bits (151), Expect = 2e-08, Method: Composition-based stats. Identities = 34/157 (21%), Positives = 60/157 (38%), Gaps = 17/157 (10%) Query: 1 MTIQDNKKDLKLSHRRGI---ARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDV 57 M ++ + S RR AR A + L Q +++ + Y Sbjct: 41 MRQAGHRSQVAPSQRRSRSTTARQVAFEVLRQ-----------VADSDAYANLVLPPALR 89 Query: 58 ESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIE 117 + D + + +G + + D +I++ T +D + LR GV +++ Sbjct: 90 RARLEGRDAGFATELAYGTLRMRGLYDAIIAAHTTR--PLEDIDSAVLDCLRLGVHQIVS 147 Query: 118 CHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVS 154 VP +SE V +A D +FINAVL +S Sbjct: 148 MR-VPAHAAVSETVGVARDNIGAGPAQFINAVLRSIS 183 >gi|227549211|ref|ZP_03979260.1| possible rRNA SAM-dependent methyltransferase RmsB [Corynebacterium lipophiloflavum DSM 44291] gi|227078665|gb|EEI16628.1| possible rRNA SAM-dependent methyltransferase RmsB [Corynebacterium lipophiloflavum DSM 44291] Length = 480 Score = 62.4 bits (151), Expect = 2e-08, Method: Composition-based stats. Identities = 29/164 (17%), Positives = 53/164 (32%), Gaps = 24/164 (14%) Query: 2 TIQDNKKDLKLSHRRGI----------ARLAAVQALYQIDIIGCSTTEIISEYETYRFCA 51 +D+ K RR AR AA ++ + Y Sbjct: 15 NNRDSGHRSKPQPRREAQATPARIGDSAREAAF-----------EVVHRVATDDAYANLV 63 Query: 52 DTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAG 111 L E D + + +G + + +D +I+ C + + + + + LR G Sbjct: 64 LPNLLRERSITGRDAAFATELAYGTLRAQGVLDAVIARCSSRE--LGDIAPEVLAALRLG 121 Query: 112 VLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSR 155 +L+ V + V + G F NA+L +SR Sbjct: 122 AYQLLYMR-VDDHAAVDTSVRLVEAAGAGKAKGFANAILRTISR 164 >gi|31792601|ref|NP_855094.1| Fmu protein (SUN protein) [Mycobacterium bovis AF2122/97] gi|121637337|ref|YP_977560.1| putative fmu protein [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|215426744|ref|ZP_03424663.1| putative fmu protein [Mycobacterium tuberculosis T92] gi|219557310|ref|ZP_03536386.1| putative fmu protein [Mycobacterium tuberculosis T17] gi|224989812|ref|YP_002644499.1| putative fmu protein [Mycobacterium bovis BCG str. Tokyo 172] gi|260186346|ref|ZP_05763820.1| putative fmu protein [Mycobacterium tuberculosis CPHL_A] gi|260200462|ref|ZP_05767953.1| putative fmu protein [Mycobacterium tuberculosis T46] gi|260204672|ref|ZP_05772163.1| putative fmu protein [Mycobacterium tuberculosis K85] gi|289442852|ref|ZP_06432596.1| SUN protein [Mycobacterium tuberculosis T46] gi|289447003|ref|ZP_06436747.1| SUN protein [Mycobacterium tuberculosis CPHL_A] gi|289569424|ref|ZP_06449651.1| SUN protein [Mycobacterium tuberculosis T17] gi|289574076|ref|ZP_06454303.1| SUN protein [Mycobacterium tuberculosis K85] gi|289749965|ref|ZP_06509343.1| SUN protein [Mycobacterium tuberculosis T92] gi|31618190|emb|CAD94303.1| PROBABLE FMU PROTEIN (SUN PROTEIN) [Mycobacterium bovis AF2122/97] gi|121492984|emb|CAL71455.1| Probable fmu protein [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|224772925|dbj|BAH25731.1| putative fmu protein [Mycobacterium bovis BCG str. Tokyo 172] gi|289415771|gb|EFD13011.1| SUN protein [Mycobacterium tuberculosis T46] gi|289419961|gb|EFD17162.1| SUN protein [Mycobacterium tuberculosis CPHL_A] gi|289538507|gb|EFD43085.1| SUN protein [Mycobacterium tuberculosis K85] gi|289543178|gb|EFD46826.1| SUN protein [Mycobacterium tuberculosis T17] gi|289690552|gb|EFD57981.1| SUN protein [Mycobacterium tuberculosis T92] Length = 457 Score = 62.0 bits (150), Expect = 2e-08, Method: Composition-based stats. Identities = 31/152 (20%), Positives = 55/152 (36%), Gaps = 14/152 (9%) Query: 19 ARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMD 78 AR AA + L +S + Y L + D + + +G Sbjct: 16 ARRAAFETL-----------RAVSARDAYANLVLPALLAQRGIGGRDAAFATELTYGTCR 64 Query: 79 RKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFF 138 + +D +I + S +D +L +LR G +L+ V +S V A F Sbjct: 65 ARGLLDAVIGAAAER--SPQAIDPVLLDLLRLGTYQLL-RTRVDAHAAVSTTVEQAGIEF 121 Query: 139 YGDEPKFINAVLDKVSRKEEIKRSGCVSAITQ 170 F+N VL ++ ++E G ++ Q Sbjct: 122 DSARAGFVNGVLRTIAGRDERSWVGELAPDAQ 153 >gi|15608545|ref|NP_215923.1| Fmu protein (SUN protein) [Mycobacterium tuberculosis H37Rv] gi|15840865|ref|NP_335902.1| sun protein [Mycobacterium tuberculosis CDC1551] gi|148661198|ref|YP_001282721.1| Fmu protein [Mycobacterium tuberculosis H37Ra] gi|148822627|ref|YP_001287381.1| fmu protein (sun protein) [Mycobacterium tuberculosis F11] gi|167968446|ref|ZP_02550723.1| fmu protein (sun protein) [Mycobacterium tuberculosis H37Ra] gi|215411052|ref|ZP_03419860.1| fmu protein (sun protein) [Mycobacterium tuberculosis 94_M4241A] gi|215445594|ref|ZP_03432346.1| fmu protein (sun protein) [Mycobacterium tuberculosis T85] gi|218753116|ref|ZP_03531912.1| fmu protein (sun protein) [Mycobacterium tuberculosis GM 1503] gi|253799543|ref|YP_003032544.1| SUN protein [Mycobacterium tuberculosis KZN 1435] gi|254231649|ref|ZP_04924976.1| fmu protein (sun protein) [Mycobacterium tuberculosis C] gi|254364290|ref|ZP_04980336.1| fmu protein (sun protein) [Mycobacterium tuberculosis str. Haarlem] gi|254550421|ref|ZP_05140868.1| SUN protein [Mycobacterium tuberculosis '98-R604 INH-RIF-EM'] gi|289554802|ref|ZP_06444012.1| SUN protein [Mycobacterium tuberculosis KZN 605] gi|289757513|ref|ZP_06516891.1| fmu protein [Mycobacterium tuberculosis T85] gi|289761566|ref|ZP_06520944.1| fmu protein (sun protein) [Mycobacterium tuberculosis GM 1503] gi|294994969|ref|ZP_06800660.1| SUN protein [Mycobacterium tuberculosis 210] gi|297633963|ref|ZP_06951743.1| SUN protein [Mycobacterium tuberculosis KZN 4207] gi|297730952|ref|ZP_06960070.1| SUN protein [Mycobacterium tuberculosis KZN R506] gi|298524913|ref|ZP_07012322.1| fmu protein (sun protein) [Mycobacterium tuberculosis 94_M4241A] gi|306775590|ref|ZP_07413927.1| SUN protein [Mycobacterium tuberculosis SUMu001] gi|306780738|ref|ZP_07419075.1| SUN protein [Mycobacterium tuberculosis SUMu002] gi|306788507|ref|ZP_07426829.1| SUN protein [Mycobacterium tuberculosis SUMu004] gi|306792830|ref|ZP_07431132.1| SUN protein [Mycobacterium tuberculosis SUMu005] gi|306807307|ref|ZP_07443975.1| SUN protein [Mycobacterium tuberculosis SUMu007] gi|306967506|ref|ZP_07480167.1| SUN protein [Mycobacterium tuberculosis SUMu009] gi|306971698|ref|ZP_07484359.1| SUN protein [Mycobacterium tuberculosis SUMu010] gi|307079408|ref|ZP_07488578.1| SUN protein [Mycobacterium tuberculosis SUMu011] gi|307083976|ref|ZP_07493089.1| SUN protein [Mycobacterium tuberculosis SUMu012] gi|313658285|ref|ZP_07815165.1| SUN protein [Mycobacterium tuberculosis KZN V2475] gi|2829532|sp|P71675|Y1407_MYCTU RecName: Full=Putative methyltransferase Rv1407/MT1451 gi|1542915|emb|CAB02186.1| PROBABLE FMU PROTEIN (SUN PROTEIN) [Mycobacterium tuberculosis H37Rv] gi|13881065|gb|AAK45716.1| sun protein [Mycobacterium tuberculosis CDC1551] gi|124600708|gb|EAY59718.1| fmu protein (sun protein) [Mycobacterium tuberculosis C] gi|134149804|gb|EBA41849.1| fmu protein (sun protein) [Mycobacterium tuberculosis str. Haarlem] gi|148505350|gb|ABQ73159.1| Fmu protein [Mycobacterium tuberculosis H37Ra] gi|148721154|gb|ABR05779.1| fmu protein (sun protein) [Mycobacterium tuberculosis F11] gi|253321046|gb|ACT25649.1| SUN protein [Mycobacterium tuberculosis KZN 1435] gi|289439434|gb|EFD21927.1| SUN protein [Mycobacterium tuberculosis KZN 605] gi|289709072|gb|EFD73088.1| fmu protein (sun protein) [Mycobacterium tuberculosis GM 1503] gi|289713077|gb|EFD77089.1| fmu protein [Mycobacterium tuberculosis T85] gi|298494707|gb|EFI30001.1| fmu protein (sun protein) [Mycobacterium tuberculosis 94_M4241A] gi|308215901|gb|EFO75300.1| SUN protein [Mycobacterium tuberculosis SUMu001] gi|308326397|gb|EFP15248.1| SUN protein [Mycobacterium tuberculosis SUMu002] gi|308334896|gb|EFP23747.1| SUN protein [Mycobacterium tuberculosis SUMu004] gi|308338705|gb|EFP27556.1| SUN protein [Mycobacterium tuberculosis SUMu005] gi|308346230|gb|EFP35081.1| SUN protein [Mycobacterium tuberculosis SUMu007] gi|308354824|gb|EFP43675.1| SUN protein [Mycobacterium tuberculosis SUMu009] gi|308358774|gb|EFP47625.1| SUN protein [Mycobacterium tuberculosis SUMu010] gi|308362711|gb|EFP51562.1| SUN protein [Mycobacterium tuberculosis SUMu011] gi|308366378|gb|EFP55229.1| SUN protein [Mycobacterium tuberculosis SUMu012] gi|323720071|gb|EGB29177.1| SUN protein [Mycobacterium tuberculosis CDC1551A] gi|326903028|gb|EGE49961.1| SUN protein [Mycobacterium tuberculosis W-148] gi|328459291|gb|AEB04714.1| SUN protein [Mycobacterium tuberculosis KZN 4207] Length = 457 Score = 62.0 bits (150), Expect = 2e-08, Method: Composition-based stats. Identities = 31/152 (20%), Positives = 55/152 (36%), Gaps = 14/152 (9%) Query: 19 ARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMD 78 AR AA + L +S + Y L + D + + +G Sbjct: 16 ARRAAFETL-----------RAVSARDAYANLVLPALLAQRGIGGRDAAFATELTYGTCR 64 Query: 79 RKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFF 138 + +D +I + S +D +L +LR G +L+ V +S V A F Sbjct: 65 ARGLLDAVIGAAAER--SPQAIDPVLLDLLRLGTYQLL-RTRVDAHAAVSTTVEQAGIEF 121 Query: 139 YGDEPKFINAVLDKVSRKEEIKRSGCVSAITQ 170 F+N VL ++ ++E G ++ Q Sbjct: 122 DSARAGFVNGVLRTIAGRDERSWVGELAPDAQ 153 >gi|256827223|ref|YP_003151182.1| tRNA/rRNA cytosine-C5-methylase [Cryptobacterium curtum DSM 15641] gi|256583366|gb|ACU94500.1| tRNA/rRNA cytosine-C5-methylase [Cryptobacterium curtum DSM 15641] Length = 500 Score = 62.0 bits (150), Expect = 2e-08, Method: Composition-based stats. Identities = 30/140 (21%), Positives = 49/140 (35%), Gaps = 18/140 (12%) Query: 19 ARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMD 78 AR AV E + + +S D + RV++ GV+ Sbjct: 7 ARRLAV-----------EIGRDARERKAFASDLLDARLGKSGLNAADRAFTRVLVLGVVA 55 Query: 79 RKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFF 138 +D +I CL + L LR E+I + V + + V +A F Sbjct: 56 TVGTLDEVIGRCLDRAGDV---GLQLRDALRVSTYEIIFLNKDAY-VAVDQGVELA-AFV 110 Query: 139 YGDEPKFINAVLDKV--SRK 156 + NAVL ++ +RK Sbjct: 111 QPRARRLANAVLRRIMAARK 130 >gi|219114260|ref|XP_002176301.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1] gi|217402704|gb|EEC42693.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1] Length = 413 Score = 62.0 bits (150), Expect = 2e-08, Method: Composition-based stats. Identities = 34/148 (22%), Positives = 60/148 (40%), Gaps = 17/148 (11%) Query: 17 GIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGV 76 AR A +AL I + + + R ++ S D + R+++ Sbjct: 75 RNARFLAARAL----ITKTGS----AAFAVDRLESNKHY---STLSTRDRSFARLLVTTT 123 Query: 77 MDRKQHIDLLISSCLTE-KWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCI-- 133 R ID ++ C E K +R+D + + LR G +L+ VP + E V + Sbjct: 124 ERRLGQIDEVLRQCQKETKSRPNRVDQFVQAALRIGATQLLFLK-VPEHAAVKETVELLR 182 Query: 134 --AHDFFYGDEPKFINAVLDKVSRKEEI 159 KF+NAVL ++SR+ ++ Sbjct: 183 HDPKTTVPESRIKFVNAVLRRISREGDV 210 >gi|159030883|emb|CAO88564.1| unnamed protein product [Microcystis aeruginosa PCC 7806] Length = 446 Score = 62.0 bits (150), Expect = 2e-08, Method: Composition-based stats. Identities = 24/139 (17%), Positives = 50/139 (35%), Gaps = 13/139 (9%) Query: 17 GIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGV 76 AR A+ L ID + + + S +D I++G+ Sbjct: 2 NNARQLALLILRDIDRSSAYPDRALDRHLS-----------ASSLNCLDKALTTEIVYGI 50 Query: 77 MDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHD 136 + R++ +D L+ + + ++ L IL G+ +L +P ++ V + Sbjct: 51 VRRQRTLDALLDRLGKK--TAAQQPPDLRRILHIGLYQLRYLSQIPPSAAVNTAVELTKI 108 Query: 137 FFYGDEPKFINAVLDKVSR 155 G +N +L + R Sbjct: 109 SHLGKLAAVVNGMLRQYLR 127 >gi|54025577|ref|YP_119819.1| putative RNA-binding Sun protein [Nocardia farcinica IFM 10152] gi|54017085|dbj|BAD58455.1| putative RNA-binding Sun protein [Nocardia farcinica IFM 10152] Length = 627 Score = 62.0 bits (150), Expect = 3e-08, Method: Composition-based stats. Identities = 31/156 (19%), Positives = 60/156 (38%), Gaps = 18/156 (11%) Query: 4 QDNKKDLKLSHRRGIA--RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVY 61 + + K + R I R A++ L + E Y +L + Sbjct: 172 RPGRTGPKNAAGRSIDPPREVALEVL-----------RAVRERAAYANLVLPKLLRDRRI 220 Query: 62 LHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSV 121 D + +G + +D +I++C +++D L +LR GV +L+ + Sbjct: 221 DGRDAALATELAYGACRAQGLLDAVIAAC--AGRPVAQIDGPLLDVLRLGVYQLL-RTRI 277 Query: 122 PVEVIISEYVCIAH-DFFYGDEPKFINAVLDKVSRK 156 + V +A +F G F+NAVL + +R+ Sbjct: 278 GAHAAVDTSVGLARAEFGAGKS-GFVNAVLRQAARR 312 >gi|300814531|ref|ZP_07094787.1| NusB family protein [Peptoniphilus sp. oral taxon 836 str. F0141] gi|300511358|gb|EFK38602.1| NusB family protein [Peptoniphilus sp. oral taxon 836 str. F0141] Length = 238 Score = 62.0 bits (150), Expect = 3e-08, Method: Composition-based stats. Identities = 22/102 (21%), Positives = 46/102 (45%), Gaps = 2/102 (1%) Query: 58 ESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIE 117 +S D + + I GV+ + ++D +I + K F ++ I+ IL + + Sbjct: 31 QSNISDRDFTFVKNITTGVIRNRTYLDYVIK--INSKIRFKKIHKIIAIILEMAIYQCYF 88 Query: 118 CHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEI 159 +P I+ E V +A + F+NA+L + K+++ Sbjct: 89 LDKIPNYSIVDESVKLAKLYGNKGSSSFVNAILRNIVSKDKV 130 >gi|282895327|ref|ZP_06303529.1| Fmu, rRNA SAM-dependent methyltransferase [Raphidiopsis brookii D9] gi|281199633|gb|EFA74493.1| Fmu, rRNA SAM-dependent methyltransferase [Raphidiopsis brookii D9] Length = 465 Score = 62.0 bits (150), Expect = 3e-08, Method: Composition-based stats. Identities = 27/139 (19%), Positives = 49/139 (35%), Gaps = 14/139 (10%) Query: 20 RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79 R A AL ++ G I +D D +++G + R Sbjct: 26 RQIAFTALREVH-RGAYADIAIDRTLQKFKLSDH-----------DRRLMTELVYGSVRR 73 Query: 80 KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139 ++ +D +I +K L IL G+ +L +PV ++ V +A + + Sbjct: 74 QRSLDAIIDQIADKKSQQQ--PRDLRCILHLGLYQLRYQQKIPVSAAVNTTVQLAKENGF 131 Query: 140 GDEPKFINAVLDKVSRKEE 158 F+N L + R E Sbjct: 132 PGLTGFVNGFLRQYIRLLE 150 >gi|315656712|ref|ZP_07909599.1| ribosomal RNA small subunit methyltransferase B [Mobiluncus curtisii subsp. holmesii ATCC 35242] gi|315492667|gb|EFU82271.1| ribosomal RNA small subunit methyltransferase B [Mobiluncus curtisii subsp. holmesii ATCC 35242] Length = 520 Score = 62.0 bits (150), Expect = 3e-08, Method: Composition-based stats. Identities = 31/139 (22%), Positives = 52/139 (37%), Gaps = 14/139 (10%) Query: 15 RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74 RR AR A QAL + + Y L + D + +++ Sbjct: 42 RRDPARDVAFQAL-----------RRVDQDHAYANLVLPGLIERARLHRRDAAFATELVY 90 Query: 75 GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134 G + + D +I L + LD L ++LR G+ ++++ V + V +A Sbjct: 91 GTLRLQGRYDAIIG--LLSDRDIAALDPELVTVLRMGIHQILQMR-VEDYAAVDTMVDLA 147 Query: 135 HDFFYGDEPKFINAVLDKV 153 D +NAVL KV Sbjct: 148 RDRLSAGPAGMVNAVLRKV 166 >gi|309389024|gb|ADO76904.1| sun protein [Halanaerobium praevalens DSM 2228] Length = 449 Score = 62.0 bits (150), Expect = 3e-08, Method: Composition-based stats. Identities = 27/99 (27%), Positives = 39/99 (39%), Gaps = 5/99 (5%) Query: 63 HVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVP 122 D F I +GV+ K ++D +I+ K S ++D + LR GV +L VP Sbjct: 35 KRDKNLFTEIYYGVIRNKLYLDYIINQF--SKTSLLKMDSEVLMGLRIGVYQLFFLDKVP 92 Query: 123 VEVIISEYVCIAHDF---FYGDEPKFINAVLDKVSRKEE 158 I E V F N VL ++RK Sbjct: 93 ARAAIYESVEAVKIILPASQKGAISFTNGVLRNINRKRN 131 >gi|306784137|ref|ZP_07422459.1| SUN protein [Mycobacterium tuberculosis SUMu003] gi|306797229|ref|ZP_07435531.1| SUN protein [Mycobacterium tuberculosis SUMu006] gi|306803111|ref|ZP_07439779.1| SUN protein [Mycobacterium tuberculosis SUMu008] gi|308331083|gb|EFP19934.1| SUN protein [Mycobacterium tuberculosis SUMu003] gi|308342392|gb|EFP31243.1| SUN protein [Mycobacterium tuberculosis SUMu006] gi|308350182|gb|EFP39033.1| SUN protein [Mycobacterium tuberculosis SUMu008] Length = 457 Score = 62.0 bits (150), Expect = 3e-08, Method: Composition-based stats. Identities = 31/152 (20%), Positives = 55/152 (36%), Gaps = 14/152 (9%) Query: 19 ARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMD 78 AR AA + L +S + Y L + D + + +G Sbjct: 16 ARRAAFETL-----------RAVSARDAYANLVLPALLAQRGIGGRDAAFATELTYGTCR 64 Query: 79 RKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFF 138 + +D +I + S +D +L +LR G +L+ V +S V A F Sbjct: 65 ARGLLDAVIGAAAER--SPQAIDPVLLDLLRLGTYQLL-RTRVDAHAAVSTTVEQAGIEF 121 Query: 139 YGDEPKFINAVLDKVSRKEEIKRSGCVSAITQ 170 F+N VL ++ ++E G ++ Q Sbjct: 122 DSARAGFVNGVLRTIAGRDERSWVGELAPDAQ 153 >gi|296121363|ref|YP_003629141.1| sun protein [Planctomyces limnophilus DSM 3776] gi|296013703|gb|ADG66942.1| sun protein [Planctomyces limnophilus DSM 3776] Length = 471 Score = 62.0 bits (150), Expect = 3e-08, Method: Composition-based stats. Identities = 26/143 (18%), Positives = 50/143 (34%), Gaps = 15/143 (10%) Query: 8 KDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLE 67 ++L R AR A L E+ + + D Sbjct: 10 PPMQLLAPRT-ARELAFNVLEAHHAGNKHIGEVFDQAVDR-----------TTLSPSDRR 57 Query: 68 WFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVII 127 +I G++ R+ + L+ S + + L+ L +I++ G+ ++ C +P + Sbjct: 58 LAYELICGIVRRQSTLQALLMSLVHRQ--METLERPLQTIIKIGLYQIFLCQGIPQHAAV 115 Query: 128 SEYVCIAHDFFYGDEPKFINAVL 150 E V +A F+N VL Sbjct: 116 HETVELAKR-ANLRWGGFVNGVL 137 >gi|166367976|ref|YP_001660249.1| rRNA SAM-dependent methyltransferase [Microcystis aeruginosa NIES-843] gi|166090349|dbj|BAG05057.1| rRNA SAM-dependent methyltransferase [Microcystis aeruginosa NIES-843] Length = 450 Score = 62.0 bits (150), Expect = 3e-08, Method: Composition-based stats. Identities = 24/139 (17%), Positives = 50/139 (35%), Gaps = 13/139 (9%) Query: 17 GIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGV 76 AR A+ L ID + + + S +D I++G+ Sbjct: 2 NNARQLALLILRDIDRSSAYPDRALDRHLS-----------ASSLNCLDTALTTEIVYGI 50 Query: 77 MDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHD 136 + R++ +D L+ + + ++ L IL G+ +L +P ++ V + Sbjct: 51 IRRQRTLDALLDRLGKK--TAAQQPPDLRRILHIGLYQLRYLSQIPPSAAVNTAVELTKI 108 Query: 137 FFYGDEPKFINAVLDKVSR 155 G +N +L + R Sbjct: 109 SHLGKLAAVVNGMLRQYLR 127 >gi|304389466|ref|ZP_07371429.1| ribosomal RNA small subunit methyltransferase B [Mobiluncus curtisii subsp. curtisii ATCC 35241] gi|304327276|gb|EFL94511.1| ribosomal RNA small subunit methyltransferase B [Mobiluncus curtisii subsp. curtisii ATCC 35241] Length = 523 Score = 62.0 bits (150), Expect = 3e-08, Method: Composition-based stats. Identities = 31/139 (22%), Positives = 52/139 (37%), Gaps = 14/139 (10%) Query: 15 RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74 RR AR A QAL + + Y L + D + +++ Sbjct: 42 RRDPARDVAFQAL-----------RRVDQDHAYANLVLPGLIERARLHRRDAAFATELVY 90 Query: 75 GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134 G + + D +I L + LD L ++LR G+ ++++ V + V +A Sbjct: 91 GTLRLQGRYDAIIG--LLSDRDIAALDPELVTVLRMGIHQILQMR-VEDYAAVDTMVDLA 147 Query: 135 HDFFYGDEPKFINAVLDKV 153 D +NAVL KV Sbjct: 148 RDRLSAGPAGMVNAVLRKV 166 >gi|324991975|gb|EGC23897.1| RNA methyltransferase Sun [Streptococcus sanguinis SK405] Length = 438 Score = 61.7 bits (149), Expect = 3e-08, Method: Composition-based stats. Identities = 31/145 (21%), Positives = 58/145 (40%), Gaps = 15/145 (10%) Query: 12 LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71 + ++ AR ++ L E+ E Y A +S D Sbjct: 1 MESKQKTARWQVLEIL----------EEVFEE-GAYSNIALNRALSQSPLSQADKGLVTE 49 Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131 +++G + RK ++ +S L E +LD + +L + +++ +P + E V Sbjct: 50 LVYGTVARKITLEWYLS-HLIEDR--DKLDNWIYILLMLSLYQMLYLDKIPQHATVHEAV 106 Query: 132 CIAHDFFYGDEPKFINAVLDKVSRK 156 IA G KFINA+L ++ R+ Sbjct: 107 EIAKIRKRG-SEKFINALLRRIERE 130 >gi|323340708|ref|ZP_08080960.1| RNA methyltransferase Sun [Lactobacillus ruminis ATCC 25644] gi|323091831|gb|EFZ34451.1| RNA methyltransferase Sun [Lactobacillus ruminis ATCC 25644] Length = 447 Score = 61.7 bits (149), Expect = 3e-08, Method: Composition-based stats. Identities = 26/147 (17%), Positives = 58/147 (39%), Gaps = 16/147 (10%) Query: 10 LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF 69 +K +R R AV+ L E I + +Y A + +S D+ Sbjct: 1 MKKLNR--NPRFLAVKLL-----------ERIEKNGSYSNLALNQTIKKSQLDERDVSLL 47 Query: 70 RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISE 129 I++GV+ RK ++ + + + + +L+ + + + +P + +E Sbjct: 48 TNIVYGVIQRKLTLEFYLDGFIKNRRKVE---PWVYELLKTALYQQLYLDKIPKRAVFNE 104 Query: 130 YVCIAHDFFYGDEPKFINAVLDKVSRK 156 + IA + +F+ +L ++ RK Sbjct: 105 TIEIAKVNGHEGIRRFVTGILHEIERK 131 >gi|304313374|ref|YP_003812972.1| Ribosomal RNA small subunit methyltransferase B [gamma proteobacterium HdN1] gi|301799107|emb|CBL47350.1| Ribosomal RNA small subunit methyltransferase B [gamma proteobacterium HdN1] Length = 492 Score = 61.7 bits (149), Expect = 3e-08, Method: Composition-based stats. Identities = 23/116 (19%), Positives = 44/116 (37%), Gaps = 3/116 (2%) Query: 42 SEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLD 101 + E+ R D + + + + I +GV +D L++ L D Sbjct: 24 QQAESLRALNDLLPSAQERLPEAERKLAQEIAYGVCRWFTRLDKLLNPLLEH--PLKARD 81 Query: 102 MILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKE 157 L ++L G+ +L +P ISE V + +N +L +V R++ Sbjct: 82 RDLHALLLVGLYQLYYTR-IPDHAAISETVEATRQLEKPWASRLVNGILRRVQREK 136 >gi|111224598|ref|YP_715392.1| hypothetical protein FRAAL5224 [Frankia alni ACN14a] gi|111152130|emb|CAJ63857.1| conserved hypothetical protein [Frankia alni ACN14a] Length = 497 Score = 61.7 bits (149), Expect = 3e-08, Method: Composition-based stats. Identities = 23/119 (19%), Positives = 43/119 (36%), Gaps = 3/119 (2%) Query: 36 STTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKW 95 + E +Y L S D + + +G + + +D L+ + + Sbjct: 27 EVLRAVDERGSYANLLLPSLLAGSGLPARDRGFVTELAYGALRAQGTLDGLLDTATSR-- 84 Query: 96 SFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVS 154 +D L LR G +L+ VP ++ V + +F NAVL +V+ Sbjct: 85 PVHDIDPPLRDALRLGAYQLL-RTRVPARAAVASTVDLVRATSGERPVRFANAVLRRVA 142 >gi|330466983|ref|YP_004404726.1| Fmu (Sun) domain-containing protein [Verrucosispora maris AB-18-032] gi|328809954|gb|AEB44126.1| Fmu (Sun) domain-containing protein [Verrucosispora maris AB-18-032] Length = 450 Score = 61.7 bits (149), Expect = 3e-08, Method: Composition-based stats. Identities = 22/97 (22%), Positives = 38/97 (39%), Gaps = 4/97 (4%) Query: 58 ESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIE 117 E D + + +G + +D +++S R+D + LR G +L+ Sbjct: 32 EEGLFGRDAAFATELTYGTLRHSGTLDAILTSA--AGRDVQRIDPPVRDALRIGAYQLLH 89 Query: 118 CHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVS 154 VP +S V + G F NAVL +V+ Sbjct: 90 TR-VPAHAAVSSTVDLVRMVGQG-ATGFANAVLREVA 124 >gi|319948960|ref|ZP_08023065.1| RNA binding Sun protein [Dietzia cinnamea P4] gi|319437398|gb|EFV92413.1| RNA binding Sun protein [Dietzia cinnamea P4] Length = 446 Score = 61.7 bits (149), Expect = 3e-08, Method: Composition-based stats. Identities = 24/140 (17%), Positives = 48/140 (34%), Gaps = 8/140 (5%) Query: 36 STTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKW 95 + + E Y + D + +G + + +D +I+ L Sbjct: 4 TVMAAVRERAAYANLTLPAELRRAKLDTRDAALATELTYGTLRAQGLLDRIIT--LASSR 61 Query: 96 SFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSR 155 +D + ++R G +L+ + + V A G F+NAVL K+S Sbjct: 62 PVEEIDPPVLDLIRLGAYQLLFTR-IGAHAAVDTSVEAARTAGLGRAGAFVNAVLRKISA 120 Query: 156 KE-----EIKRSGCVSAITQ 170 ++ E R G + + Sbjct: 121 RDADAWVEALRDGVTDPVAR 140 >gi|315655374|ref|ZP_07908274.1| ribosomal RNA small subunit methyltransferase B [Mobiluncus curtisii ATCC 51333] gi|315490314|gb|EFU79939.1| ribosomal RNA small subunit methyltransferase B [Mobiluncus curtisii ATCC 51333] Length = 523 Score = 61.7 bits (149), Expect = 4e-08, Method: Composition-based stats. Identities = 31/139 (22%), Positives = 52/139 (37%), Gaps = 14/139 (10%) Query: 15 RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74 RR AR A QAL + + Y L + D + +++ Sbjct: 42 RRDPARDVAFQAL-----------RRVDQDHAYANLVLPGLIERARLHRRDAAFATELVY 90 Query: 75 GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134 G + + D +I L + LD L ++LR G+ ++++ V + V +A Sbjct: 91 GTLRLQGRYDAIIG--LLSDRDIAALDPELVTVLRMGIHQILQMR-VEDYAAVDTMVDLA 147 Query: 135 HDFFYGDEPKFINAVLDKV 153 D +NAVL KV Sbjct: 148 RDRLSAGPAGMVNAVLRKV 166 >gi|145594413|ref|YP_001158710.1| Fmu (Sun) domain-containing protein [Salinispora tropica CNB-440] gi|145303750|gb|ABP54332.1| Fmu (Sun) domain protein [Salinispora tropica CNB-440] Length = 509 Score = 61.7 bits (149), Expect = 4e-08, Method: Composition-based stats. Identities = 27/138 (19%), Positives = 51/138 (36%), Gaps = 15/138 (10%) Query: 20 RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79 R AA QA + + + D + + D + + +G + R Sbjct: 64 RHAAYQA-----VAAVHRDDAYANLVLPAILRD------AGLVGRDAAFATELTYGTLRR 112 Query: 80 KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139 +D +++ +R+D + LR G +L+ VP +S V + Sbjct: 113 LGTLDAILTDA--AGRDVARIDPPVRDALRLGAYQLLHTR-VPAHAAVSATVDLVRSVGP 169 Query: 140 GDEPKFINAVLDKVSRKE 157 G F NAVL +V+ ++ Sbjct: 170 G-ATGFANAVLREVASRD 186 >gi|326329761|ref|ZP_08196082.1| ribosomal RNA small subunit methyltransferase B [Nocardioidaceae bacterium Broad-1] gi|325952526|gb|EGD44545.1| ribosomal RNA small subunit methyltransferase B [Nocardioidaceae bacterium Broad-1] Length = 489 Score = 61.7 bits (149), Expect = 4e-08, Method: Composition-based stats. Identities = 29/137 (21%), Positives = 55/137 (40%), Gaps = 14/137 (10%) Query: 19 ARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMD 78 ARLAA + L + + E Y + D + + G + Sbjct: 35 ARLAAFEVL-----------KAVRVDEAYANLVLPHVLGRLGLEGRDAAFATELASGTLR 83 Query: 79 RKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFF 138 ++ D ++++C+ ++++ + +LR G +++ VP IS V +A Sbjct: 84 QQGTYDAVLAACIDR--PLAKVEAKVLDVLRLGAHQVLSMR-VPDHAAISTSVDLARSKV 140 Query: 139 YGDEPKFINAVLDKVSR 155 F+NAVL KV+R Sbjct: 141 GQGPAGFVNAVLRKVTR 157 >gi|148906361|gb|ABR16335.1| unknown [Picea sitchensis] Length = 558 Score = 61.7 bits (149), Expect = 4e-08, Method: Composition-based stats. Identities = 33/163 (20%), Positives = 67/163 (41%), Gaps = 11/163 (6%) Query: 2 TIQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVE--- 58 + +K + +S R + AV+ L +I+ G + ++Y + + Sbjct: 77 PVDKSKINSNVSPHRAAS---AVRLL-RIEQGGAFADLLNADYRESAIDDEMDYIQRTLG 132 Query: 59 ---SVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLEL 115 + + I+ GV+ K+++D LI S + ++ +L ILR GV E+ Sbjct: 133 FRTNPLDARNTRLVTDIVAGVVRWKRYLDYLIFSLYDGAKNVKDMEPLLQQILRIGVYEI 192 Query: 116 IECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEE 158 ++ P V+ +E V +A +N +L +V+ E Sbjct: 193 VKLGMPPYAVV-NENVTLARAALRAGAGNMVNGILRRVASDRE 234 >gi|116788313|gb|ABK24833.1| unknown [Picea sitchensis] Length = 515 Score = 61.3 bits (148), Expect = 4e-08, Method: Composition-based stats. Identities = 33/163 (20%), Positives = 67/163 (41%), Gaps = 11/163 (6%) Query: 2 TIQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVE--- 58 + +K + +S R + AV+ L +I+ G + ++Y + + Sbjct: 77 PVDKSKINSNVSPHRAAS---AVRLL-RIEQGGAFADLLNADYRESAIDDEMDYIQRTLG 132 Query: 59 ---SVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLEL 115 + + I+ GV+ K+++D LI S + ++ +L ILR GV E+ Sbjct: 133 FRTNPLDARNTRLVTDIVAGVVRWKRYLDYLIFSLYDGAKNVKDMEPLLQQILRIGVYEI 192 Query: 116 IECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEE 158 ++ P V+ +E V +A +N +L +V+ E Sbjct: 193 VKLGMPPYAVV-NENVTLARAALRAGAGNMVNGILRRVASDRE 234 >gi|108760453|ref|YP_629658.1| ribosomal RNA small subunit methyltransferase B [Myxococcus xanthus DK 1622] gi|108464333|gb|ABF89518.1| ribosomal RNA small subunit methyltransferase B [Myxococcus xanthus DK 1622] Length = 438 Score = 61.3 bits (148), Expect = 4e-08, Method: Composition-based stats. Identities = 27/134 (20%), Positives = 45/134 (33%), Gaps = 13/134 (9%) Query: 19 ARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMD 78 AR A+Q L + + DT+L D + +G Sbjct: 3 ARALAIQVL----------ARVRATDAYLNVVLDTQLSESPPKDPRDAALVTELTYGATR 52 Query: 79 RKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFF 138 R+ +D I+ K L+ + + LR G ++ VP ++E V + Sbjct: 53 RQLALDYAITRFADRK--LDALEDKVLAALRIGAYQIFHTR-VPARAAVAETVQALKEVG 109 Query: 139 YGDEPKFINAVLDK 152 F NA+L K Sbjct: 110 LTRAAGFTNAILRK 123 >gi|291003629|ref|ZP_06561602.1| ribosomal RNA small subunit methyltransferase [Saccharopolyspora erythraea NRRL 2338] Length = 473 Score = 61.3 bits (148), Expect = 4e-08, Method: Composition-based stats. Identities = 29/142 (20%), Positives = 52/142 (36%), Gaps = 14/142 (9%) Query: 19 ARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMD 78 AR AA++ L + + + Y A L + D + +G Sbjct: 33 ARSAALETL-----------RAVRDRDAYANLALPALLKQRRISGRDAALATELTYGACR 81 Query: 79 RKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFF 138 + +D +I C +D L LR G +L+ +P ++ V I Sbjct: 82 AQGLLDAVIGECSAR--PLDGIDPELLDALRLGAYQLL-RTRIPAHAAVASTVDIVRAES 138 Query: 139 YGDEPKFINAVLDKVSRKEEIK 160 + F NAVL ++S ++E + Sbjct: 139 GSRQAGFANAVLRRISERDEQE 160 >gi|330719303|ref|ZP_08313903.1| 16S rRNA methyltransferase B [Leuconostoc fallax KCTC 3537] Length = 411 Score = 61.3 bits (148), Expect = 4e-08, Method: Composition-based stats. Identities = 16/96 (16%), Positives = 39/96 (40%), Gaps = 4/96 (4%) Query: 61 YLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHS 120 D +++GV+ + + + + K +LD + +L + ++ Sbjct: 1 MSDADRRLLTTLVYGVIQHRLTLAYWLEPFVANK----KLDDWVRELLYTALFQMQYLDK 56 Query: 121 VPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRK 156 +P + +E + +A + KF+ +L +SRK Sbjct: 57 IPQHAVFNESIEVAKILGHVGIRKFVTGILHDISRK 92 >gi|222151048|ref|YP_002560202.1| hypothetical protein MCCL_0799 [Macrococcus caseolyticus JCSC5402] gi|222120171|dbj|BAH17506.1| conserved hypothetical protein [Macrococcus caseolyticus JCSC5402] Length = 434 Score = 61.3 bits (148), Expect = 5e-08, Method: Composition-based stats. Identities = 27/144 (18%), Positives = 49/144 (34%), Gaps = 22/144 (15%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 + R A++ L +++E Y E + VD +++G Sbjct: 2 KHNVRSVALEIL----------DAVLTE-GAYSNLLINEAIKKGYVEPVDRALLTELVYG 50 Query: 76 VMDRKQHIDLLISSCLT---EKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVC 132 + RK ++ + + + W RL IL + + + VP II+E V Sbjct: 51 TLQRKLTLEFYAAPYIKTNIKGW-MRRL------IL-MSIYQSVYLDKVPDHAIINEAVE 102 Query: 133 IAHDFFYGDEPKFINAVLDKVSRK 156 I +NA+L R Sbjct: 103 ITKRRGSMGGANTVNAILRNFQRN 126 >gi|331701497|ref|YP_004398456.1| sun protein [Lactobacillus buchneri NRRL B-30929] gi|329128840|gb|AEB73393.1| sun protein [Lactobacillus buchneri NRRL B-30929] Length = 443 Score = 61.3 bits (148), Expect = 5e-08, Method: Composition-based stats. Identities = 23/137 (16%), Positives = 49/137 (35%), Gaps = 15/137 (10%) Query: 20 RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79 R AV L + + +Y + + D F I++GV+ Sbjct: 9 RQLAVMTL------------VRTSNGSYSNLQINAVIQSTSMGPADKGLFTNIVYGVIQH 56 Query: 80 KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139 + ++ + L E + + + +L + +L VP I E + IA + Sbjct: 57 RLTLEYQLRPFLRE---PEKTEAWVKELLYTAMYQLEYLDRVPKRAIFDETIKIAKQMGH 113 Query: 140 GDEPKFINAVLDKVSRK 156 +F+ +L ++ R+ Sbjct: 114 DGTRRFVTGILHQMDRQ 130 >gi|229025307|ref|ZP_04181726.1| Ribosomal RNA small subunit methyltransferase B [Bacillus cereus AH1272] gi|228735998|gb|EEL86574.1| Ribosomal RNA small subunit methyltransferase B [Bacillus cereus AH1272] Length = 387 Score = 60.9 bits (147), Expect = 5e-08, Method: Composition-based stats. Identities = 13/52 (25%), Positives = 22/52 (42%) Query: 105 CSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRK 156 +LR + +++ VP I E V IA + +N VL + R+ Sbjct: 18 RVLLRLSLYQMLYLDRVPERAAIHEAVEIAKRRGHKGISGMVNGVLRSIQRE 69 >gi|311029972|ref|ZP_07708062.1| sun protein [Bacillus sp. m3-13] Length = 126 Score = 60.9 bits (147), Expect = 5e-08, Method: Composition-based stats. Identities = 20/117 (17%), Positives = 44/117 (37%), Gaps = 14/117 (11%) Query: 20 RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79 R A++AL ++ + +++ Y D F I++G + R Sbjct: 5 RELALEALLNVEKKQAYSNLLLNNYLD-----------SGKLSKKDAGLFTEIVYGTIQR 53 Query: 80 KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHD 136 +D ++S + ++ + +L+ + +++ VP I E V IA Sbjct: 54 TITLDYYLASYIEKQKKLQDWVKV---LLKMTLYQMLYLDKVPARAAIYEAVEIAKK 107 >gi|332653342|ref|ZP_08419087.1| ribosomal RNA small subunit methyltransferase B [Ruminococcaceae bacterium D16] gi|332518488|gb|EGJ48091.1| ribosomal RNA small subunit methyltransferase B [Ruminococcaceae bacterium D16] Length = 445 Score = 60.9 bits (147), Expect = 5e-08, Method: Composition-based stats. Identities = 22/141 (15%), Positives = 44/141 (31%), Gaps = 14/141 (9%) Query: 19 ARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMD 78 AR AA+ L + A + + + GV+ Sbjct: 3 AREAALLTL-----------NTCQRQGGWSDGALKKQLAAGGLEGREAALATQLCFGVVQ 51 Query: 79 RKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFF 138 + +D IS R++ + LR G+ +++ +P ++ V + Sbjct: 52 NEMLLDFYISKF--SNIPLRRMESKVVQALRLGLYQMLFLTKIPQSAAVNCSVELTRTHC 109 Query: 139 -YGDEPKFINAVLDKVSRKEE 158 P +NA+L + R Sbjct: 110 KNPRAPGMVNAILRSLQRNLN 130 >gi|300858538|ref|YP_003783521.1| hypothetical protein cpfrc_01121 [Corynebacterium pseudotuberculosis FRC41] gi|300685992|gb|ADK28914.1| hypothetical protein cpfrc_01121 [Corynebacterium pseudotuberculosis FRC41] gi|302206250|gb|ADL10592.1| Ribosomal RNA small subunit methyltransferase B [Corynebacterium pseudotuberculosis C231] gi|302330808|gb|ADL21002.1| Ribosomal RNA small subunit methyltransferase B [Corynebacterium pseudotuberculosis 1002] gi|308276492|gb|ADO26391.1| Ribosomal RNA small subunit methyltransferase B [Corynebacterium pseudotuberculosis I19] Length = 504 Score = 60.9 bits (147), Expect = 5e-08, Method: Composition-based stats. Identities = 31/185 (16%), Positives = 59/185 (31%), Gaps = 30/185 (16%) Query: 2 TIQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDV---- 57 + +N+ ++S RG Q D S +I + + D Sbjct: 38 SQVNNRPGGRVSENRGR----------QGDFRKLSGVDIARSLAFHVLHRVSSEDAFANL 87 Query: 58 -------ESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRA 110 ++ D + + +G + +D L++ C + + L + LR Sbjct: 88 VLPKLLNKANVHGRDAAFATELTYGTLRTLGVLDTLLAECSSRG--LETIHPELLNALRL 145 Query: 111 GVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRK------EEIKRSGC 164 G +L+ P + V I + F N +L +SR E + G Sbjct: 146 GAYQLMYMRVEPHA-AVDTTVRIVEALGHDKAKGFANGILRTISRSTPAEWMERLAPQGE 204 Query: 165 VSAIT 169 V+ I Sbjct: 205 VANIA 209 >gi|257791459|ref|YP_003182065.1| NusB/RsmB/TIM44 [Eggerthella lenta DSM 2243] gi|257475356|gb|ACV55676.1| NusB/RsmB/TIM44 [Eggerthella lenta DSM 2243] Length = 473 Score = 60.9 bits (147), Expect = 5e-08, Method: Composition-based stats. Identities = 26/150 (17%), Positives = 42/150 (28%), Gaps = 16/150 (10%) Query: 5 DNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHV 64 K + ARLAA+ + E + + S Sbjct: 16 PKNPPKKPRSKASPARLAAL-----------DVVRAVRERDAFAQDVIGTRIDRSDLSSE 64 Query: 65 DLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVE 124 D + + GV+ +D +I L + LR E+I P Sbjct: 65 DRAFATKLALGVVSATGTLDEIIDRALNAPSDVK---PDVRDALRVSTYEIIFLGKTPHA 121 Query: 125 VIISEYVCIAHDFFYGDEPKFINAVLDKVS 154 + + V + F NAVL K+ Sbjct: 122 -AVDQGVELVRSFAMSAS-GLANAVLRKIV 149 >gi|262068291|ref|ZP_06027903.1| ribosomal RNA small subunit methyltransferase B [Fusobacterium periodonticum ATCC 33693] gi|291378029|gb|EFE85547.1| ribosomal RNA small subunit methyltransferase B [Fusobacterium periodonticum ATCC 33693] Length = 434 Score = 60.9 bits (147), Expect = 6e-08, Method: Composition-based stats. Identities = 22/111 (19%), Positives = 43/111 (38%), Gaps = 13/111 (11%) Query: 53 TELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSC---LTEKWSFSRLDMILCSILR 109 + E + + + I +GV+ K +D +I + ++W + ++LR Sbjct: 25 NDAFREFHFTAKEKAFITEIFYGVLRNKNFLDYMIEKNTKVIKKEW--------IRNLLR 76 Query: 110 AGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIK 160 + +L S V+ E IA KFIN L R ++++ Sbjct: 77 ISIYQLTFMSSDAKGVVW-EATEIAKKHGIAIS-KFINGTLRNYLRNKDLE 125 >gi|224543281|ref|ZP_03683820.1| hypothetical protein CATMIT_02481 [Catenibacterium mitsuokai DSM 15897] gi|224523814|gb|EEF92919.1| hypothetical protein CATMIT_02481 [Catenibacterium mitsuokai DSM 15897] Length = 51 Score = 60.9 bits (147), Expect = 6e-08, Method: Composition-based stats. Identities = 16/51 (31%), Positives = 25/51 (49%), Gaps = 1/51 (1%) Query: 103 ILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKV 153 + +IL EL+E + ++I+E V A + D KFIN VL + Sbjct: 1 MEQAILLVATCELLES-ELDKSIVINEAVINAKQYCDEDSYKFINGVLTAI 50 >gi|210633282|ref|ZP_03297747.1| hypothetical protein COLSTE_01660 [Collinsella stercoris DSM 13279] gi|210159200|gb|EEA90171.1| hypothetical protein COLSTE_01660 [Collinsella stercoris DSM 13279] Length = 495 Score = 60.9 bits (147), Expect = 6e-08, Method: Composition-based stats. Identities = 28/135 (20%), Positives = 46/135 (34%), Gaps = 16/135 (11%) Query: 19 ARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMD 78 AR A + AL Q G +I + D D + + GV Sbjct: 29 ARRATLDALMQAQESGRYVRDIFA-----------HGDQLGRLSSRDAAFALRLALGVTA 77 Query: 79 RKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFF 138 + +D ++S L + S + LR E + P +V++S+ V + Sbjct: 78 TEGCLDDALNSHLAKPGKVS--ARV-RCCLRISAYEALY-LDTPADVVVSQGVELVRS-C 132 Query: 139 YGDEPKFINAVLDKV 153 NAVL +V Sbjct: 133 AKSASGLANAVLRRV 147 >gi|51243976|ref|YP_063860.1| SUN protein (Fmu protein) [Desulfotalea psychrophila LSv54] gi|50875013|emb|CAG34853.1| related to SUN protein (FMU protein) [Desulfotalea psychrophila LSv54] Length = 454 Score = 60.9 bits (147), Expect = 6e-08, Method: Composition-based stats. Identities = 22/92 (23%), Positives = 43/92 (46%), Gaps = 3/92 (3%) Query: 73 IHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVC 132 + GV+ ++Q++D+L+ T +LD + L G+ +L S+P I++E V Sbjct: 48 VFGVLRKRQYLDILLRKLSTV--RLKKLDPFVHQALTVGLYQLFFLDSIPESAIVNEAVN 105 Query: 133 IAHDFFYGDE-PKFINAVLDKVSRKEEIKRSG 163 F+N +L +R++E +G Sbjct: 106 SCKTAKVHKRLHGFVNGILRNATRQKEALANG 137 >gi|238063929|ref|ZP_04608638.1| fmu domain-containing protein [Micromonospora sp. ATCC 39149] gi|237885740|gb|EEP74568.1| fmu domain-containing protein [Micromonospora sp. ATCC 39149] Length = 507 Score = 60.9 bits (147), Expect = 6e-08, Method: Composition-based stats. Identities = 20/97 (20%), Positives = 38/97 (39%), Gaps = 4/97 (4%) Query: 58 ESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIE 117 + D + + +G + +D +++ +R+D + LR G +L+ Sbjct: 89 QEGLTGRDAAFATELTYGTLRHLGTLDAILTDA--AGRDVARIDPPVRDALRLGAYQLLH 146 Query: 118 CHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVS 154 VP +S V + G F NAVL +V+ Sbjct: 147 TR-VPAHAAVSSTVDLVRTVGIG-ATGFANAVLREVA 181 >gi|91204618|emb|CAJ70846.1| conserved hypothetical protein [Candidatus Kuenenia stuttgartiensis] Length = 462 Score = 60.9 bits (147), Expect = 6e-08, Method: Composition-based stats. Identities = 22/130 (16%), Positives = 51/130 (39%), Gaps = 9/130 (6%) Query: 32 IIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCL 91 + +++++ C T + D +++G+ + +D ++S Sbjct: 11 LRKVDEKDVLAQELVEERCQQTNV------SRRDKHLLLELVNGITRHRLSLDTILSFF- 63 Query: 92 TEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFF-YGDEPKFINAVL 150 K +++ L LR G+ ++I +P ++ V + + D +F NA+L Sbjct: 64 -SKIPPQKIEPWLLYALRLGIYQMIFLDKIPHSAAVNTSVELVKNLIRRPDAARFANAIL 122 Query: 151 DKVSRKEEIK 160 V R + K Sbjct: 123 RAVDRTIKNK 132 >gi|171912374|ref|ZP_02927844.1| RsmB [Verrucomicrobium spinosum DSM 4136] Length = 414 Score = 60.5 bits (146), Expect = 7e-08, Method: Composition-based stats. Identities = 25/138 (18%), Positives = 53/138 (38%), Gaps = 21/138 (15%) Query: 19 ARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMD 78 +R A+Q L + + ++I + H D + ++ G + Sbjct: 8 SRQLALQILVEWERSEIYAADLIEKAAATHRLD-----------HRDTALLQTLVMGTLR 56 Query: 79 RKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFF 138 +D+ + + L+ + +LR G+ +L+ +P +++E V A Sbjct: 57 NIDLLDIWLERVCDNQ----HLETSVHWLLRLGIAQLL-LLEMPAHAVVNETVNQA---- 107 Query: 139 YGDEPKFINAVLDKVSRK 156 G +NAVL +V R+ Sbjct: 108 -GKARGLVNAVLRRVDRE 124 >gi|119716670|ref|YP_923635.1| Fmu (Sun) domain-containing protein [Nocardioides sp. JS614] gi|119537331|gb|ABL81948.1| Fmu (Sun) domain protein [Nocardioides sp. JS614] Length = 472 Score = 60.5 bits (146), Expect = 7e-08, Method: Composition-based stats. Identities = 32/156 (20%), Positives = 63/156 (40%), Gaps = 20/156 (12%) Query: 2 TIQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVY 61 + + N+ + ARLAA+ + + + G T ++ + Sbjct: 21 SQRGNRPRVDP------ARLAALDVMKAVRVDGAYTNLVLPSVLR-----------QHGL 63 Query: 62 LHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSV 121 D + ++ G + R+ D ++++C+ S+++ + LR G +L+ V Sbjct: 64 SGRDAAFVTELVSGTIRRRGTYDAILAACVDR--PLSKVEAKVLDALRLGTHQLLSMR-V 120 Query: 122 PVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKE 157 PV IS V + F NAVL +V+R+E Sbjct: 121 PVHAAISTTVDLVRAKVSSGAGGFANAVLRQVARQE 156 >gi|227534879|ref|ZP_03964928.1| rRNA SAM-dependent methyltransferase RmsB [Lactobacillus paracasei subsp. paracasei ATCC 25302] gi|227187635|gb|EEI67702.1| rRNA SAM-dependent methyltransferase RmsB [Lactobacillus paracasei subsp. paracasei ATCC 25302] Length = 446 Score = 60.5 bits (146), Expect = 7e-08, Method: Composition-based stats. Identities = 18/106 (16%), Positives = 41/106 (38%), Gaps = 5/106 (4%) Query: 65 DLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVE 124 D I++GV+ + +D ++ + + +LD + +L V +L VP Sbjct: 41 DAGLLTNIVYGVIQHQLTLDFYLAPFIKGR----KLDNWIRCLLDTAVYQLQYLDKVPAR 96 Query: 125 VIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRSGCVSAITQ 170 + + IA + KF+ VL +++ ++ + Sbjct: 97 AVFFDSTEIAKKLGHQGIAKFVTGVLRN-AQRTGFPDPAAIADPVK 141 >gi|239631985|ref|ZP_04675016.1| tRNA and rRNA cytosine-C5-methylase [Lactobacillus paracasei subsp. paracasei 8700:2] gi|301066670|ref|YP_003788693.1| tRNA and rRNA cytosine-C5-methylase [Lactobacillus casei str. Zhang] gi|239526450|gb|EEQ65451.1| tRNA and rRNA cytosine-C5-methylase [Lactobacillus paracasei subsp. paracasei 8700:2] gi|300439077|gb|ADK18843.1| tRNA and rRNA cytosine-C5-methylase [Lactobacillus casei str. Zhang] Length = 446 Score = 60.5 bits (146), Expect = 7e-08, Method: Composition-based stats. Identities = 18/106 (16%), Positives = 41/106 (38%), Gaps = 5/106 (4%) Query: 65 DLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVE 124 D I++GV+ + +D ++ + + +LD + +L V +L VP Sbjct: 41 DAGLLTNIVYGVIQHQLTLDFYLAPFIKGR----KLDNWIRCLLDTAVYQLQYLDKVPAR 96 Query: 125 VIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRSGCVSAITQ 170 + + IA + KF+ VL +++ ++ + Sbjct: 97 AVFFDSTEIAKKLGHQGIAKFVTGVLRN-AQRTGFPDPAAIADPVK 141 >gi|258404156|ref|YP_003196898.1| NusB/RsmB/TIM44 [Desulfohalobium retbaense DSM 5692] gi|257796383|gb|ACV67320.1| NusB/RsmB/TIM44 [Desulfohalobium retbaense DSM 5692] Length = 429 Score = 60.5 bits (146), Expect = 7e-08, Method: Composition-based stats. Identities = 29/152 (19%), Positives = 56/152 (36%), Gaps = 16/152 (10%) Query: 19 ARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMD 78 AR AA+ L ++ + + D LD S+ D +++GV Sbjct: 10 ARQAALSCL----------EGVLLRDQELQASLDGVLDSASLEPR-DRALATELVYGVCR 58 Query: 79 RKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFF 138 K H++ I+ + K +RL L IL E++ +P + V Sbjct: 59 HKTHLETAITRFVHPK---TRLKPRLRLILSVAAYEMLYLDRIPAYASVDWAVNAVKKRV 115 Query: 139 YGDEPKFINAVLDKVSRKEEIKRSGCVSAITQ 170 NAVL +++ +++ G + + + Sbjct: 116 AVQRAGVANAVLRRLA--DDLHNRGRPAVVHE 145 >gi|117928484|ref|YP_873035.1| Fmu (Sun) domain-containing protein [Acidothermus cellulolyticus 11B] gi|117648947|gb|ABK53049.1| Fmu (Sun) domain protein [Acidothermus cellulolyticus 11B] Length = 440 Score = 60.5 bits (146), Expect = 7e-08, Method: Composition-based stats. Identities = 20/90 (22%), Positives = 37/90 (41%), Gaps = 4/90 (4%) Query: 65 DLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVE 124 D +++G + D ++ CL RL + +LR GV +L+ V Sbjct: 42 DAALATELVYGTLRLLGTYDAVLDRCLPR---PDRLHPRVRDVLRLGVHQLLGMR-VDPH 97 Query: 125 VIISEYVCIAHDFFYGDEPKFINAVLDKVS 154 + E V +A + +NAVL +++ Sbjct: 98 AAVYESVELARRTGGAVAARLVNAVLRRIA 127 >gi|220906120|ref|YP_002481431.1| sun protein [Cyanothece sp. PCC 7425] gi|219862731|gb|ACL43070.1| sun protein [Cyanothece sp. PCC 7425] Length = 443 Score = 60.5 bits (146), Expect = 7e-08, Method: Composition-based stats. Identities = 23/139 (16%), Positives = 48/139 (34%), Gaps = 15/139 (10%) Query: 19 ARLAAVQALYQIDIIGCSTT-EIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVM 77 AR A L Q G + + + E +++G + Sbjct: 3 ARQLAFITL-QAVHRGAYADVAVERSLRQHPLTEERE-----------RRLATELVYGCV 50 Query: 78 DRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDF 137 R++ +D L+ L +K + L ++L G+ +L + +P + V + Sbjct: 51 RRQRTLDALVDQ-LAKK-PARQQPPDLRTLLHLGLYQLRYLNHIPANAAVHTTVELVKHR 108 Query: 138 FYGDEPKFINAVLDKVSRK 156 F+N +L + R+ Sbjct: 109 GLAGLAGFVNGLLRQYIRQ 127 >gi|227544379|ref|ZP_03974428.1| rRNA SAM-dependent methyltransferase RmsB [Lactobacillus reuteri CF48-3A] gi|300909760|ref|ZP_07127221.1| ribosomal RNA small subunit methyltransferase B [Lactobacillus reuteri SD2112] gi|227185642|gb|EEI65713.1| rRNA SAM-dependent methyltransferase RmsB [Lactobacillus reuteri CF48-3A] gi|300893625|gb|EFK86984.1| ribosomal RNA small subunit methyltransferase B [Lactobacillus reuteri SD2112] Length = 449 Score = 60.5 bits (146), Expect = 7e-08, Method: Composition-based stats. Identities = 31/147 (21%), Positives = 54/147 (36%), Gaps = 15/147 (10%) Query: 10 LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF 69 +K + AR A+ AL + + E Y +L D Sbjct: 1 MKTKFQPQNARELALVAL-----------KGVVENGAYSNLQVDQLLKRYPLADKDRRLA 49 Query: 70 RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISE 129 II+GV+ K ++ ++ + K RLD + ++L + + + VP + E Sbjct: 50 TNIIYGVLQHKLTLEYWLNGFVQGK----RLDPWVKTLLLSALYQYHYLERVPDWAVTDE 105 Query: 130 YVCIAHDFFYGDEPKFINAVLDKVSRK 156 + IA KF+ VL + RK Sbjct: 106 SIEIAKRRGNPGIRKFVTGVLHAILRK 132 >gi|257466839|ref|ZP_05631150.1| 16S rRNA m(5)C 967 methyltransferase [Fusobacterium gonidiaformans ATCC 25563] gi|315917987|ref|ZP_07914227.1| 16S rRNA m(5)C 967 methyltransferase [Fusobacterium gonidiaformans ATCC 25563] gi|313691862|gb|EFS28697.1| 16S rRNA m(5)C 967 methyltransferase [Fusobacterium gonidiaformans ATCC 25563] Length = 440 Score = 60.5 bits (146), Expect = 7e-08, Method: Composition-based stats. Identities = 29/126 (23%), Positives = 50/126 (39%), Gaps = 17/126 (13%) Query: 47 YRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTE---KWSFSRLDMI 103 Y A EL V+ + + + +GV+ K ++D +IS + E W Sbjct: 19 YSNIALNELFHRKVFKKGEKNFITEVFYGVIRNKIYLDYMISQKVKEVKKDW-------- 70 Query: 104 LCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSR-----KEE 158 L + R ++ S + +I E V +A + +F+N VL R +E Sbjct: 71 LQQLFRLSFYQIRFMKS-DDKGVIWEGVELAKKKYGVSVSRFVNGVLRNFQRSFIEEEEN 129 Query: 159 IKRSGC 164 +KR G Sbjct: 130 LKREGR 135 >gi|319947546|ref|ZP_08021776.1| RNA methyltransferase Sun [Streptococcus australis ATCC 700641] gi|319746234|gb|EFV98497.1| RNA methyltransferase Sun [Streptococcus australis ATCC 700641] Length = 440 Score = 60.5 bits (146), Expect = 7e-08, Method: Composition-based stats. Identities = 27/144 (18%), Positives = 62/144 (43%), Gaps = 15/144 (10%) Query: 14 HRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVII 73 ++ AR A+ L EI + + + + ++ VD I+ Sbjct: 6 NKMQTAREVALSTL----------GEIFQD-GAFSNISLKKSLGKATLSDVDKSLVTEIV 54 Query: 74 HGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCI 133 +G + RK ++ +S + ++ ++D + +L + + + +P+ ++ E V + Sbjct: 55 YGTVSRKLTLEWYLSHFVADR---DQVDPWIYHLLLMSLYQFVYLEKIPLHAVVHEAVEL 111 Query: 134 AHDFFYGDEPKFINAVLDKVSRKE 157 A G K++NA+L K+ R+E Sbjct: 112 AKQRKKG-SEKYVNALLRKMLREE 134 >gi|257452795|ref|ZP_05618094.1| 16S rRNA m(5)C 967 methyltransferase [Fusobacterium sp. 3_1_5R] gi|317059336|ref|ZP_07923821.1| 16S rRNA m(5)C 967 methyltransferase [Fusobacterium sp. 3_1_5R] gi|313685012|gb|EFS21847.1| 16S rRNA m(5)C 967 methyltransferase [Fusobacterium sp. 3_1_5R] Length = 440 Score = 60.5 bits (146), Expect = 8e-08, Method: Composition-based stats. Identities = 29/126 (23%), Positives = 50/126 (39%), Gaps = 17/126 (13%) Query: 47 YRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTE---KWSFSRLDMI 103 Y A EL V+ + + + +GV+ K ++D +IS + E W Sbjct: 19 YSNIALNELFHRKVFKKGEKNFITEVFYGVIRNKIYLDYMISQKVKEVKKDW-------- 70 Query: 104 LCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSR-----KEE 158 L + R ++ S + +I E V +A + +F+N VL R +E Sbjct: 71 LQQLFRLSFYQIRFMKS-DDKGVIWEGVELAKKKYGVSVSRFVNGVLRNFQRSFIEEEEN 129 Query: 159 IKRSGC 164 +KR G Sbjct: 130 LKREGR 135 >gi|18416739|ref|NP_567745.1| antitermination NusB domain-containing protein [Arabidopsis thaliana] gi|15450968|gb|AAK96755.1| putative protein [Arabidopsis thaliana] gi|30984514|gb|AAP42720.1| At4g26370 [Arabidopsis thaliana] gi|332659789|gb|AEE85189.1| antitermination NusB domain-containing protein [Arabidopsis thaliana] Length = 301 Score = 60.5 bits (146), Expect = 8e-08, Method: Composition-based stats. Identities = 31/189 (16%), Positives = 55/189 (29%), Gaps = 52/189 (27%) Query: 17 GIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELD-------------------- 56 AR A+ LY + G + + R E D Sbjct: 98 RAARELALVILYAACLEGSDPIRLFEKRINARREPGYEFDKSSLLEYNHMSFGGPPVKTE 157 Query: 57 --------------------------VESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSC 90 + VY + L + + ++ V+D+ ++I Sbjct: 158 TKEEEDELVRHDEKESKIEAEVLSAPPKLVYSKLVLRFAKKLLAAVVDKWDSHVVIIEKI 217 Query: 91 LTEKW---SFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFIN 147 W R+ + SIL + E + ++I+E V +A F G P+ IN Sbjct: 218 SPPDWKSAPAGRI--LEFSILHLAMSE-VAVLETRHPIVINEAVDLAKRFCDGSAPRIIN 274 Query: 148 AVLDKVSRK 156 L + Sbjct: 275 GCLRTFVKD 283 >gi|320450772|ref|YP_004202868.1| 16S rRNA M [Thermus scotoductus SA-01] gi|320150941|gb|ADW22319.1| 16S rRNA M [Thermus scotoductus SA-01] Length = 399 Score = 60.5 bits (146), Expect = 8e-08, Method: Composition-based stats. Identities = 24/97 (24%), Positives = 43/97 (44%), Gaps = 6/97 (6%) Query: 61 YLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHS 120 + D + +++GV+ R +++D L+ L + RL + ILR G E + + Sbjct: 36 WPERDRAYATHLVYGVLRRLRYLDFLLEPHLRK---PERLPPQVRWILRLGAWEWLAGKA 92 Query: 121 VPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKE 157 V S +V A +NAVL ++S +E Sbjct: 93 DHARV--SPWVEEAKRVS-PRLAGLVNAVLRRLSLRE 126 >gi|307102870|gb|EFN51136.1| hypothetical protein CHLNCDRAFT_8770 [Chlorella variabilis] Length = 425 Score = 60.5 bits (146), Expect = 8e-08, Method: Composition-based stats. Identities = 23/100 (23%), Positives = 40/100 (40%), Gaps = 2/100 (2%) Query: 71 VIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEY 130 ++ GV ++ +D ++ L ++LD + + LR G+ EL E + V I+ Y Sbjct: 11 ELVSGVTRWRRRLDFSLTQLL-RGRDVAQLDAPVRNALRLGLYELAELKNATHGV-INSY 68 Query: 131 VCIAHDFFYGDEPKFINAVLDKVSRKEEIKRSGCVSAITQ 170 V + + N VL V+R E Q Sbjct: 69 VDLVKSVQHQGAANATNGVLRNVARGLEAGTLPQPPRPAQ 108 >gi|317490607|ref|ZP_07949080.1| NusB family protein [Eggerthella sp. 1_3_56FAA] gi|325831536|ref|ZP_08164790.1| putative ribosomal RNA small subunit methyltransferase B [Eggerthella sp. HGA1] gi|316910309|gb|EFV31945.1| NusB family protein [Eggerthella sp. 1_3_56FAA] gi|325486790|gb|EGC89238.1| putative ribosomal RNA small subunit methyltransferase B [Eggerthella sp. HGA1] Length = 473 Score = 60.5 bits (146), Expect = 8e-08, Method: Composition-based stats. Identities = 25/150 (16%), Positives = 42/150 (28%), Gaps = 16/150 (10%) Query: 5 DNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHV 64 K + ARLAA+ + E + + S Sbjct: 16 PKNPQKKPRSKASPARLAAL-----------DVVRAVRERDAFAQDVIGTRIDRSDLSSE 64 Query: 65 DLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVE 124 D + + GV+ +D +I L + LR E++ P Sbjct: 65 DRAFATKLALGVVSSTGTLDEIIDRALNAPSDVK---PDVRDALRVSAYEIVFLGKTPHA 121 Query: 125 VIISEYVCIAHDFFYGDEPKFINAVLDKVS 154 + + V + F NAVL K+ Sbjct: 122 -AVDQGVELVRSFAMSAS-GLANAVLRKIV 149 >gi|288918235|ref|ZP_06412590.1| Fmu (Sun) domain protein [Frankia sp. EUN1f] gi|288350405|gb|EFC84627.1| Fmu (Sun) domain protein [Frankia sp. EUN1f] Length = 501 Score = 60.5 bits (146), Expect = 8e-08, Method: Composition-based stats. Identities = 29/162 (17%), Positives = 57/162 (35%), Gaps = 20/162 (12%) Query: 10 LKLSHRRG-----IARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHV 64 + S R ARL A ++ + E Y L Sbjct: 1 MNTSAPRRGGAADPARLLA------WEV-----LRAVDERGAYANLMLPALLNRRRLSPR 49 Query: 65 DLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVE 124 D + + +G + + +D ++ + + +D + LR G +L+ VP Sbjct: 50 DRGFATELTYGSLRAQGTLDGVLGTVTSR--PVDTVDPPVRDALRLGTYQLLSTR-VPAR 106 Query: 125 VIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRSGCVS 166 ++ V + +F NAVL +V+ + E + +G V+ Sbjct: 107 AAVASTVELVRATCGERPVRFANAVLRRVAARVE-ETAGDVA 147 >gi|148377730|ref|YP_001256606.1| transcription termination factor (NusB) [Mycoplasma agalactiae PG2] gi|291320415|ref|YP_003515678.1| transcription termination factor NusB [Mycoplasma agalactiae] gi|148291776|emb|CAL59165.1| Transcription termination factor (NusB) [Mycoplasma agalactiae PG2] gi|290752749|emb|CBH40724.1| Transcription termination factor (NusB) [Mycoplasma agalactiae] Length = 139 Score = 60.5 bits (146), Expect = 8e-08, Method: Composition-based stats. Identities = 21/99 (21%), Positives = 46/99 (46%), Gaps = 6/99 (6%) Query: 59 SVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIEC 118 S +D E F+ + + + I L + ++++L ++ +IL EL+ Sbjct: 32 SDESDIDNEQFKQL-ELISLNYDYYQKTILKFLNQNTAWTKLPALIRAILLNATHELL-- 88 Query: 119 HSVPVEVIISEYVCIAHDFFYGDE--PKFINAVLDKVSR 155 S+ +++I+E V I F+ + K +NA+L + + Sbjct: 89 -SISPKIVINEAVEITKSFYEQEANFYKLVNALLQNIYK 126 >gi|226366354|ref|YP_002784137.1| rRNA methyltransferase [Rhodococcus opacus B4] gi|226244844|dbj|BAH55192.1| putative rRNA methyltransferase [Rhodococcus opacus B4] Length = 475 Score = 60.5 bits (146), Expect = 8e-08, Method: Composition-based stats. Identities = 30/149 (20%), Positives = 53/149 (35%), Gaps = 4/149 (2%) Query: 13 SHRRGIARLAAVQ-ALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71 + R R A Q L Q + + E + Y L E D Sbjct: 20 NRPRQARRPDASQSGLDQPRLAARDVLRAVRERDAYANLVLPGLLRERRLDGRDAALATE 79 Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131 + +G + +D +I+ C +D L +L+ G +L+ P + + V Sbjct: 80 LAYGAARARGLLDAVIADC--AGRPIDEIDGPLLDVLQLGAYQLLRTRVAPHAAVAT-SV 136 Query: 132 CIAHDFFYGDEPKFINAVLDKVSRKEEIK 160 + + F+NAVL +VS + E + Sbjct: 137 DLVRAEAGPGKAGFVNAVLRRVSERSEAE 165 >gi|116333602|ref|YP_795129.1| tRNA and rRNA cytosine-C5-methylase [Lactobacillus brevis ATCC 367] gi|116098949|gb|ABJ64098.1| tRNA and rRNA cytosine-C5-methylase [Lactobacillus brevis ATCC 367] Length = 447 Score = 60.5 bits (146), Expect = 8e-08, Method: Composition-based stats. Identities = 23/137 (16%), Positives = 56/137 (40%), Gaps = 15/137 (10%) Query: 20 RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79 R AV+AL ++ S ++ E++R VD + +++G + Sbjct: 8 RALAVEALTRVAGGAYSNLQLEQTLESHRL------------SDVDRRFVTNLVYGTIQH 55 Query: 80 KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139 + ++ +S + + L + +++ + + + VP I +E + +A D + Sbjct: 56 QLTLEYYLSKFIKPQQKV--LPWVKMTLM-VALYQELYLDRVPKRAIFNEAIQLAKDRGH 112 Query: 140 GDEPKFINAVLDKVSRK 156 +F+ VL + R+ Sbjct: 113 EGIRRFVTGVLHAIDRQ 129 >gi|184155726|ref|YP_001844066.1| rRNA methylase [Lactobacillus fermentum IFO 3956] gi|183227070|dbj|BAG27586.1| rRNA methylase [Lactobacillus fermentum IFO 3956] Length = 448 Score = 60.5 bits (146), Expect = 9e-08, Method: Composition-based stats. Identities = 19/133 (14%), Positives = 44/133 (33%), Gaps = 9/133 (6%) Query: 29 QIDIIGC-----STTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHI 83 Q + G +T + + Y + D +++G + ++ + Sbjct: 5 QAQLTGARAIALATLDKVRTSGAYSNLQLNQALESGQLSGADRRLVTALVYGTLQHQRTL 64 Query: 84 DLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEP 143 D +S + K ++ + ++L + + VP E + IA Sbjct: 65 DYWLSPFIAGK----KVRPWVKTLLLMALFQYQYLDRVPNFAATDEAIEIAKRRGNPGVR 120 Query: 144 KFINAVLDKVSRK 156 +F+ VL + R Sbjct: 121 RFVTGVLHAILRN 133 >gi|237740345|ref|ZP_04570826.1| 16S rRNA m(5)C 967 methyltransferase [Fusobacterium sp. 2_1_31] gi|229422362|gb|EEO37409.1| 16S rRNA m(5)C 967 methyltransferase [Fusobacterium sp. 2_1_31] Length = 434 Score = 60.1 bits (145), Expect = 9e-08, Method: Composition-based stats. Identities = 22/111 (19%), Positives = 42/111 (37%), Gaps = 13/111 (11%) Query: 53 TELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSC---LTEKWSFSRLDMILCSILR 109 + E + + I +GV+ K +D +I + ++W + ++LR Sbjct: 25 NDAFKEFYLTAKEKAFITEIFYGVLRNKNFLDYMIEKNTKVIKKEW--------IRNLLR 76 Query: 110 AGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIK 160 + +L S V+ E IA KFIN L R ++++ Sbjct: 77 ISIYQLTFMSSDAKGVVW-EATEIAKKHGIAIS-KFINGTLRNYLRNKDLE 125 >gi|294782560|ref|ZP_06747886.1| ribosomal RNA small subunit methyltransferase B [Fusobacterium sp. 1_1_41FAA] gi|294481201|gb|EFG28976.1| ribosomal RNA small subunit methyltransferase B [Fusobacterium sp. 1_1_41FAA] Length = 434 Score = 60.1 bits (145), Expect = 9e-08, Method: Composition-based stats. Identities = 22/111 (19%), Positives = 42/111 (37%), Gaps = 13/111 (11%) Query: 53 TELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSC---LTEKWSFSRLDMILCSILR 109 + E + + I +GV+ K +D +I + ++W + ++LR Sbjct: 25 NDAFKEFYLTAKEKAFITEIFYGVLRNKNFLDYMIEKNTKVIKKEW--------IRNLLR 76 Query: 110 AGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIK 160 + +L S V+ E IA KFIN L R ++++ Sbjct: 77 ISIYQLTFMSSDAKGVVW-EATEIAKKHGIAIS-KFINGTLRNYLRNKDLE 125 >gi|225435806|ref|XP_002285757.1| PREDICTED: hypothetical protein [Vitis vinifera] Length = 288 Score = 60.1 bits (145), Expect = 9e-08, Method: Composition-based stats. Identities = 30/142 (21%), Positives = 54/142 (38%), Gaps = 16/142 (11%) Query: 30 IDIIGCSTT-EIISEYETYRFCADTELDVES---------VYLHVDLEWFRVIIHGVMDR 79 + G T E + E + + E +E+ VY + L + R ++ V+D+ Sbjct: 134 MSFGGPPVTTETVEEADELLRNNEKESAIEAEVLSAPPKLVYGKLILRFTRKLLVAVVDK 193 Query: 80 KQHIDLLISSCLTEKWSFS---RLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHD 136 L+I W R+ + IL + E+ +++I+E V +A Sbjct: 194 WNSHVLVIDKVAPPNWKNEPAGRI--LELCILHLAMSEI-AVLGTRHQIVINEAVDLAKR 250 Query: 137 FFYGDEPKFINAVLDKVSRKEE 158 F G P+ IN L + E Sbjct: 251 FCDGAAPRIINGCLRTFVKDLE 272 >gi|320352726|ref|YP_004194065.1| sun protein [Desulfobulbus propionicus DSM 2032] gi|320121228|gb|ADW16774.1| sun protein [Desulfobulbus propionicus DSM 2032] Length = 450 Score = 60.1 bits (145), Expect = 9e-08, Method: Composition-based stats. Identities = 18/99 (18%), Positives = 41/99 (41%), Gaps = 3/99 (3%) Query: 59 SVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIEC 118 +D + +I+GV+ +K+++D ++ + ++ LR GV +L+ Sbjct: 35 EQLPDIDRGLVKTLIYGVLRQKEYLDHILRTFAKH--PLRKMKPRTLMTLRIGVYQLLFL 92 Query: 119 HSVPVEVIISEYVCIAHDFFYGD-EPKFINAVLDKVSRK 156 +P ++ V F+N +L V+R+ Sbjct: 93 SRIPESAAVNATVNTLKAASQPAWLIGFVNGILRAVARQ 131 >gi|148272956|ref|YP_001222517.1| putative rRNA cytosine-C5-methylases [Clavibacter michiganensis subsp. michiganensis NCPPB 382] gi|147830886|emb|CAN01830.1| putative rRNA cytosine-C5-methylases [Clavibacter michiganensis subsp. michiganensis NCPPB 382] Length = 499 Score = 60.1 bits (145), Expect = 1e-07, Method: Composition-based stats. Identities = 22/125 (17%), Positives = 43/125 (34%), Gaps = 3/125 (2%) Query: 36 STTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKW 95 + E + Y + D + +G + + D +I L Sbjct: 52 EVVSAVRESDAYANLLLPVRIRRAALSAQDAALATELAYGTLRMSGYYDRVIE--LAAGR 109 Query: 96 SFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSR 155 + +D + +LR V +L+ V ++E V +A F+N VL ++R Sbjct: 110 PVTAIDAPILDVLRLSVHQLLSMR-VATHAAVNEGVDMARAVGSRSATGFVNGVLRTITR 168 Query: 156 KEEIK 160 E + Sbjct: 169 SEPAE 173 >gi|240172782|ref|ZP_04751441.1| fmu protein (sun protein) [Mycobacterium kansasii ATCC 12478] Length = 464 Score = 60.1 bits (145), Expect = 1e-07, Method: Composition-based stats. Identities = 30/140 (21%), Positives = 52/140 (37%), Gaps = 14/140 (10%) Query: 19 ARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMD 78 AR AA AL ++ + Y A L E D + + +G Sbjct: 23 ARAAAFDAL-----------CAVTSRDAYANLALPALLRERGITGRDAAFATELTYGTCR 71 Query: 79 RKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFF 138 + +D +I + + +D +L +LR G +L+ V +S V A F Sbjct: 72 TRGLLDAVIGAA--AGRAPEAIDPVLLDLLRLGTYQLL-RTRVGSHAAVSTTVDQAGIEF 128 Query: 139 YGDEPKFINAVLDKVSRKEE 158 F+N VL ++ ++E Sbjct: 129 DSARAGFVNGVLRTIAGRDE 148 >gi|118617418|ref|YP_905750.1| Fmu protein [Mycobacterium ulcerans Agy99] gi|118569528|gb|ABL04279.1| Fmu protein [Mycobacterium ulcerans Agy99] Length = 457 Score = 60.1 bits (145), Expect = 1e-07, Method: Composition-based stats. Identities = 35/154 (22%), Positives = 54/154 (35%), Gaps = 17/154 (11%) Query: 8 KDLKLSHRRGI---ARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHV 64 + + RR AR AA AL +SE Y L E Sbjct: 2 PNQRRGPRRRPLDPARGAAFNAL-----------RAVSERNAYANLVLPALLRERGITGR 50 Query: 65 DLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVE 124 D + +G + +D +I + S +D L +LR G +L+ V Sbjct: 51 DAALATELTYGACRARGLLDAIIGAA--AGRSPEAIDPFLLDLLRLGAYQLL-RTRVDAH 107 Query: 125 VIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEE 158 +S V A F F+NAVL ++ ++E Sbjct: 108 AAVSTTVEQAGIEFDSARAGFVNAVLRTIADRDE 141 >gi|319790535|ref|YP_004152168.1| sun protein [Thermovibrio ammonificans HB-1] gi|317115037|gb|ADU97527.1| sun protein [Thermovibrio ammonificans HB-1] Length = 445 Score = 60.1 bits (145), Expect = 1e-07, Method: Composition-based stats. Identities = 21/133 (15%), Positives = 44/133 (33%), Gaps = 23/133 (17%) Query: 20 RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79 R AV+ L + +E + + + + + + R +++G + Sbjct: 8 REIAVKVL--------------NAFERDKKLREHLEALTAALTPQERAFLRELVNGTVRF 53 Query: 80 KQHIDLLISSCLTEKWSFSRLD---MILCSILRAGVLELIECHSVPVEVIISEYVCIAHD 136 + +D + RL + + LR +L VP ++E V + Sbjct: 54 LRLLDFSVERASGR-----RLASQKPTVRNALRLLAYQL-FFTGVPPYAALNETVEVVKQ 107 Query: 137 FFYGDEPKFINAV 149 F+NAV Sbjct: 108 RLGKGAAGFVNAV 120 >gi|217967819|ref|YP_002353325.1| sun protein [Dictyoglomus turgidum DSM 6724] gi|217336918|gb|ACK42711.1| sun protein [Dictyoglomus turgidum DSM 6724] Length = 430 Score = 59.7 bits (144), Expect = 1e-07, Method: Composition-based stats. Identities = 27/139 (19%), Positives = 50/139 (35%), Gaps = 16/139 (11%) Query: 20 RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79 RL A + LY ++ ++ + + E + +++GV Sbjct: 4 RLRAAEILYDLERREAYLNILLRNRLPFYDLSLKE-----------KHFITELVYGVTRW 52 Query: 80 KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139 K +D + S + L + +LR V + + V ++E V IA Sbjct: 53 KITLDYIWSRFVRR----DNLSLFSKVLLRLVVYHVYFLKDTILPVAVNEIVEIAKK-KV 107 Query: 140 GDEPKFINAVLDKVSRKEE 158 E K INAV + R++ Sbjct: 108 PKEAKLINAVSRNIIREKN 126 >gi|215430293|ref|ZP_03428212.1| fmu protein (sun protein) [Mycobacterium tuberculosis EAS054] gi|289753488|ref|ZP_06512866.1| fmu protein (sun protein) [Mycobacterium tuberculosis EAS054] gi|289694075|gb|EFD61504.1| fmu protein (sun protein) [Mycobacterium tuberculosis EAS054] Length = 254 Score = 59.7 bits (144), Expect = 1e-07, Method: Composition-based stats. Identities = 31/152 (20%), Positives = 55/152 (36%), Gaps = 14/152 (9%) Query: 19 ARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMD 78 AR AA + L +S + Y L + D + + +G Sbjct: 16 ARRAAFETL-----------RAVSARDAYANLVLPALLAQRGIGGRDAAFATELTYGTCR 64 Query: 79 RKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFF 138 + +D +I + S +D +L +LR G +L+ V +S V A F Sbjct: 65 ARGLLDAVIGAAAER--SPQAIDPVLLDLLRLGTYQLL-RTRVDAHAAVSTTVEQAGIEF 121 Query: 139 YGDEPKFINAVLDKVSRKEEIKRSGCVSAITQ 170 F+N VL ++ ++E G ++ Q Sbjct: 122 DSARAGFVNGVLRTIAGRDERSWVGELAPDAQ 153 >gi|223940862|ref|ZP_03632690.1| sun protein [bacterium Ellin514] gi|223890472|gb|EEF57005.1| sun protein [bacterium Ellin514] Length = 444 Score = 59.7 bits (144), Expect = 1e-07, Method: Composition-based stats. Identities = 29/137 (21%), Positives = 57/137 (41%), Gaps = 15/137 (10%) Query: 20 RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79 R AV+ L TE +S+ E + EL + D + +++G++ Sbjct: 16 RQIAVRVL----------TERLSQEEYTENLLEIELSR-ARLSAPDRGLCQELVYGIVRW 64 Query: 80 KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139 ++ ++ LI K R + +L+ G+ ++ +P + E V IA + + Sbjct: 65 QETLNWLI----DRKTEGRRQKPEMQVLLQLGLYQMFWLDRIPNHAAVHETVEIAKELGF 120 Query: 140 GDEPKFINAVLDKVSRK 156 + F+NAVL R+ Sbjct: 121 VAQSGFVNAVLRGYLRE 137 >gi|94990962|ref|YP_599062.1| 16S rRNA m(5)C 967 methyltransferase [Streptococcus pyogenes MGAS10270] gi|94544470|gb|ABF34518.1| 16S rRNA m(5)C 967 methyltransferase [Streptococcus pyogenes MGAS10270] Length = 440 Score = 59.7 bits (144), Expect = 1e-07, Method: Composition-based stats. Identities = 24/115 (20%), Positives = 48/115 (41%), Gaps = 4/115 (3%) Query: 37 TTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWS 96 E I + Y A + D I++G + RK ++ ++ + ++ Sbjct: 16 VIEAIFDQGAYTNIALNQQLSNKALSAKDRALLTEIVYGTVSRKISLEWYLAHYVKDR-- 73 Query: 97 FSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEP-KFINAVL 150 +LD + +L + +LI +P I+++ V IA + KF+NA+L Sbjct: 74 -DKLDKWVYYLLMLSLYQLIYLDKLPAHAIVNDAVGIAKNRGNKKGAEKFVNAIL 127 >gi|2982469|emb|CAA18233.1| putative protein [Arabidopsis thaliana] gi|7269489|emb|CAB79492.1| putative protein [Arabidopsis thaliana] Length = 286 Score = 59.7 bits (144), Expect = 1e-07, Method: Composition-based stats. Identities = 31/189 (16%), Positives = 55/189 (29%), Gaps = 52/189 (27%) Query: 17 GIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELD-------------------- 56 AR A+ LY + G + + R E D Sbjct: 83 RAARELALVILYAACLEGSDPIRLFEKRINARREPGYEFDKSSLLEYNHMSFGGPPVKTE 142 Query: 57 --------------------------VESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSC 90 + VY + L + + ++ V+D+ ++I Sbjct: 143 TKEEEDELVRHDEKESKIEAEVLSAPPKLVYSKLVLRFAKKLLAAVVDKWDSHVVIIEKI 202 Query: 91 LTEKW---SFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFIN 147 W R+ + SIL + E + ++I+E V +A F G P+ IN Sbjct: 203 SPPDWKSAPAGRI--LEFSILHLAMSE-VAVLETRHPIVINEAVDLAKRFCDGSAPRIIN 259 Query: 148 AVLDKVSRK 156 L + Sbjct: 260 GCLRTFVKD 268 >gi|19746552|ref|NP_607688.1| 16S rRNA m(5)C 967 methyltransferase [Streptococcus pyogenes MGAS8232] gi|19748764|gb|AAL98187.1| putative RNA-binding Sun protein [Streptococcus pyogenes MGAS8232] Length = 440 Score = 59.7 bits (144), Expect = 1e-07, Method: Composition-based stats. Identities = 24/115 (20%), Positives = 48/115 (41%), Gaps = 4/115 (3%) Query: 37 TTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWS 96 E I + Y A + D I++G + RK ++ ++ + ++ Sbjct: 16 VIEAIFDQGAYTNIALNQQLSNKALSAKDRALLTEIVYGTVSRKISLEWYLAHYVKDR-- 73 Query: 97 FSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEP-KFINAVL 150 +LD + +L + +LI +P I+++ V IA + KF+NA+L Sbjct: 74 -DKLDKWVYYLLMLSLYQLIYLDKLPAHAIVNDAVGIAKNRGNKKGAEKFVNAIL 127 >gi|307297435|ref|ZP_07577241.1| NusB/RsmB/TIM44 [Thermotogales bacterium mesG1.Ag.4.2] gi|306916695|gb|EFN47077.1| NusB/RsmB/TIM44 [Thermotogales bacterium mesG1.Ag.4.2] Length = 334 Score = 59.7 bits (144), Expect = 1e-07, Method: Composition-based stats. Identities = 33/147 (22%), Positives = 61/147 (41%), Gaps = 25/147 (17%) Query: 19 ARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVE-SVYLHVDLEWFRVIIHGVM 77 AR A+Q L S ++ + + +LD+ S D + II+G + Sbjct: 4 ARSIALQTL--------------SFFDANGYISFRKLDIALSTLSSQDRSFCMNIIYGCL 49 Query: 78 DRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCI--AH 135 ++ ID +S LT+ S+L + + LR G +++ S+P + V + Sbjct: 50 RKRVSIDFELSRFLTK---PSKLPHAVLNALRIGAFQILYMKSIPEYAALKSSVDMIGVK 106 Query: 136 DFFYGDEPKFINAVLDKVSRKEEIKRS 162 +F +NAVL K+ + +R Sbjct: 107 EF-----KGLVNAVLRKLINEGPAERK 128 >gi|322412409|gb|EFY03317.1| Putative RNA-binding Sun protein [Streptococcus dysgalactiae subsp. dysgalactiae ATCC 27957] Length = 440 Score = 59.7 bits (144), Expect = 1e-07, Method: Composition-based stats. Identities = 24/122 (19%), Positives = 53/122 (43%), Gaps = 6/122 (4%) Query: 32 IIGCSTTEIISEYE--TYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISS 89 I G + + + ++ Y A + + D I++G + RK ++ ++ Sbjct: 9 IRGKALLTLENIFDQGAYTNIALNQQLSNKAFSAKDRALLTEIVYGTVSRKISLEWYLAH 68 Query: 90 CLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEP-KFINA 148 + ++ +LD + +L + +LI +P I+++ V IA + KF+NA Sbjct: 69 YVKDR---DKLDKWVYYLLMLSLYQLIYLDKLPAHAIVNDAVGIAKNRGNKKGAEKFVNA 125 Query: 149 VL 150 +L Sbjct: 126 IL 127 >gi|159037486|ref|YP_001536739.1| Fmu (Sun) domain-containing protein [Salinispora arenicola CNS-205] gi|157916321|gb|ABV97748.1| Fmu (Sun) domain protein [Salinispora arenicola CNS-205] Length = 508 Score = 59.7 bits (144), Expect = 1e-07, Method: Composition-based stats. Identities = 20/89 (22%), Positives = 36/89 (40%), Gaps = 4/89 (4%) Query: 65 DLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVE 124 D + + +G + +D +++ +R+D + LR G +L+ VP Sbjct: 97 DAAFATELTYGTLRHLGTLDAILTDA--AGREVARIDPPVRDALRLGAYQLLHTR-VPAH 153 Query: 125 VIISEYVCIAHDFFYGDEPKFINAVLDKV 153 +S V + G F NAVL +V Sbjct: 154 AAVSSTVDLVRSVGPG-ATGFANAVLREV 181 >gi|94994842|ref|YP_602940.1| 16S rRNA m(5)C 967 methyltransferase [Streptococcus pyogenes MGAS10750] gi|94548350|gb|ABF38396.1| 16S rRNA m(5)C 967 methyltransferase [Streptococcus pyogenes MGAS10750] Length = 440 Score = 59.7 bits (144), Expect = 1e-07, Method: Composition-based stats. Identities = 24/115 (20%), Positives = 48/115 (41%), Gaps = 4/115 (3%) Query: 37 TTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWS 96 E I + Y A + D I++G + RK ++ ++ + ++ Sbjct: 16 VIEAIFDQGAYTNIALNQQLSSKALSAKDRALLTEIVYGTVSRKISLEWYLAHYVKDR-- 73 Query: 97 FSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEP-KFINAVL 150 +LD + +L + +LI +P I+++ V IA + KF+NA+L Sbjct: 74 -DKLDKWVYYLLMLSLYQLIYLDKLPAHAIVNDAVGIAKNRGNKKGAEKFVNAIL 127 >gi|34763758|ref|ZP_00144676.1| 16S rRNA m(5)C 967 methyltransferase [Fusobacterium nucleatum subsp. vincentii ATCC 49256] gi|27886472|gb|EAA23729.1| 16S rRNA m(5)C 967 methyltransferase [Fusobacterium nucleatum subsp. vincentii ATCC 49256] Length = 190 Score = 59.3 bits (143), Expect = 2e-07, Method: Composition-based stats. Identities = 19/99 (19%), Positives = 41/99 (41%), Gaps = 12/99 (12%) Query: 65 DLEWFRVIIHGVMDRKQHIDLLISSC---LTEKWSFSRLDMILCSILRAGVLELIECHSV 121 + + I +GV+ K+ +D +I + ++W + ++LR + ++ S Sbjct: 37 EKAFITEIFYGVIRNKKFLDYIIEKNTKEIKKEW--------IRNLLRISIYQITFMDSD 88 Query: 122 PVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIK 160 V+ E +A + KFIN L R ++ + Sbjct: 89 NKGVVW-EATELAKKKYGVPISKFINGTLRNYLRNKDSE 126 >gi|229019063|ref|ZP_04175901.1| Ribosomal RNA small subunit methyltransferase B [Bacillus cereus AH1273] gi|228742231|gb|EEL92393.1| Ribosomal RNA small subunit methyltransferase B [Bacillus cereus AH1273] Length = 369 Score = 59.3 bits (143), Expect = 2e-07, Method: Composition-based stats. Identities = 13/50 (26%), Positives = 22/50 (44%) Query: 107 ILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRK 156 +LR + +++ VP I E V IA + +N VL + R+ Sbjct: 2 LLRLSLYQMLYLDRVPERAAIHEAVEIAKRRGHKGISGMVNGVLRSIQRE 51 >gi|170782379|ref|YP_001710712.1| putative Sun-family protein [Clavibacter michiganensis subsp. sepedonicus] gi|169156948|emb|CAQ02117.1| conserved hypothetical Sun-family protein [Clavibacter michiganensis subsp. sepedonicus] Length = 488 Score = 59.3 bits (143), Expect = 2e-07, Method: Composition-based stats. Identities = 22/122 (18%), Positives = 42/122 (34%), Gaps = 3/122 (2%) Query: 36 STTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKW 95 + E + Y + D + +G + + D +I L Sbjct: 41 EVVSAVRESDAYANLLLPVRIRRAALSAQDAALATELTYGTLRMSGYYDRVIE--LAAGR 98 Query: 96 SFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSR 155 + +D + +LR V +L+ V ++E V +A F+N VL ++R Sbjct: 99 PVTAIDAPILDVLRLSVHQLLSMR-VATHAAVNEGVDMARAVGSRSATGFVNGVLRTITR 157 Query: 156 KE 157 E Sbjct: 158 SE 159 >gi|15675503|ref|NP_269677.1| 16S rRNA m(5)C 967 methyltransferase [Streptococcus pyogenes M1 GAS] gi|13622700|gb|AAK34398.1| putative RNA-binding Sun protein [Streptococcus pyogenes M1 GAS] Length = 440 Score = 59.3 bits (143), Expect = 2e-07, Method: Composition-based stats. Identities = 23/115 (20%), Positives = 47/115 (40%), Gaps = 4/115 (3%) Query: 37 TTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWS 96 E I + Y A + D I++G + RK ++ ++ + ++ Sbjct: 16 VIEAIFDQGAYTNIALNQQLSNKALSAKDRALLTEIVYGTVSRKISLEWYLAHYVKDR-- 73 Query: 97 FSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEP-KFINAVL 150 +LD + +L + +L +P I+++ V IA + KF+NA+L Sbjct: 74 -DKLDKWVYYLLMLSLYQLTYLDKLPAHAIVNDAVGIAKNRGNKKGAEKFVNAIL 127 >gi|94988962|ref|YP_597063.1| 16S rRNA m(5)C 967 methyltransferase [Streptococcus pyogenes MGAS9429] gi|94992855|ref|YP_600954.1| 16S rRNA m(5)C 967 methyltransferase [Streptococcus pyogenes MGAS2096] gi|94542470|gb|ABF32519.1| 16S rRNA m(5)C 967 methyltransferase [Streptococcus pyogenes MGAS9429] gi|94546363|gb|ABF36410.1| 16S rRNA m(5)C 967 methyltransferase [Streptococcus pyogenes MGAS2096] Length = 440 Score = 59.3 bits (143), Expect = 2e-07, Method: Composition-based stats. Identities = 23/115 (20%), Positives = 47/115 (40%), Gaps = 4/115 (3%) Query: 37 TTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWS 96 E I + Y A + D I++G + RK ++ ++ + ++ Sbjct: 16 VIEAIFDQGAYTNIALNQQLSNKALSAKDRALLTEIVYGTVSRKISLEWYLAHYVKDR-- 73 Query: 97 FSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEP-KFINAVL 150 +LD + +L + +L +P I+++ V IA + KF+NA+L Sbjct: 74 -DKLDKWVYYLLMLSLYQLTYLDKLPAHAIVNDAVGIAKNRGNKKGAEKFVNAIL 127 >gi|259503543|ref|ZP_05746445.1| RNA methyltransferase Sun [Lactobacillus antri DSM 16041] gi|259168621|gb|EEW53116.1| RNA methyltransferase Sun [Lactobacillus antri DSM 16041] Length = 448 Score = 59.3 bits (143), Expect = 2e-07, Method: Composition-based stats. Identities = 26/145 (17%), Positives = 55/145 (37%), Gaps = 15/145 (10%) Query: 12 LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71 +++++ AR A+ AL + + Y +L + D Sbjct: 1 MTNKKMTAREVALTAL-----------DRVRRRGAYSNLQLNQLLSKHQLNDNDRRLATR 49 Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131 I++G + R+ ++ + + K +LD + ++L + + VP + E + Sbjct: 50 IVYGTLQRQLTLEYWLQPFVKGK----KLDSWVETLLLTALYQYQYLERVPDWAVTDETI 105 Query: 132 CIAHDFFYGDEPKFINAVLDKVSRK 156 IA + KF+ VL V R+ Sbjct: 106 EIAKQWGNPGIRKFVTGVLHAVLRQ 130 >gi|241895667|ref|ZP_04782963.1| RNA methyltransferase [Weissella paramesenteroides ATCC 33313] gi|241871034|gb|EER74785.1| RNA methyltransferase [Weissella paramesenteroides ATCC 33313] Length = 456 Score = 59.3 bits (143), Expect = 2e-07, Method: Composition-based stats. Identities = 19/132 (14%), Positives = 48/132 (36%), Gaps = 9/132 (6%) Query: 30 IDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLE-----WFRVIIHGVMDRKQHID 84 ++ + E + A + L ++S+ DL +++GV+ + ++ Sbjct: 12 WELTNPRALSV-RVLEKVQNGAYSNLQLDSMIKQADLSEKNVHLMTTMVYGVIQHRLTLE 70 Query: 85 LLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPK 144 + + + + +L + ++ +P I E + IA + K Sbjct: 71 YWLIPFIKQPQKLE---SWVRELLYISIFQMQYLDKIPDHAIFDEAINIAKRRGHDGTRK 127 Query: 145 FINAVLDKVSRK 156 F+ VL + R+ Sbjct: 128 FVTGVLHAIQRQ 139 >gi|21910907|ref|NP_665175.1| 16S rRNA m(5)C 967 methyltransferase [Streptococcus pyogenes MGAS315] gi|28895403|ref|NP_801753.1| 16S rRNA m(5)C 967 methyltransferase [Streptococcus pyogenes SSI-1] gi|71911150|ref|YP_282700.1| 16S rRNA m(5)C 967 methyltransferase [Streptococcus pyogenes MGAS5005] gi|209559767|ref|YP_002286239.1| Putative RNA-binding Sun protein [Streptococcus pyogenes NZ131] gi|306826944|ref|ZP_07460244.1| ribosomal RNA small subunit methyltransferase B [Streptococcus pyogenes ATCC 10782] gi|21905113|gb|AAM79978.1| putative RNA-binding Sun protein [Streptococcus pyogenes MGAS315] gi|28810649|dbj|BAC63586.1| putative RNA-binding Sun protein [Streptococcus pyogenes SSI-1] gi|71853932|gb|AAZ51955.1| 16S rRNA m(5)C 967 methyltransferase [Streptococcus pyogenes MGAS5005] gi|209540968|gb|ACI61544.1| Putative RNA-binding Sun protein [Streptococcus pyogenes NZ131] gi|304430962|gb|EFM33971.1| ribosomal RNA small subunit methyltransferase B [Streptococcus pyogenes ATCC 10782] Length = 440 Score = 59.3 bits (143), Expect = 2e-07, Method: Composition-based stats. Identities = 23/115 (20%), Positives = 47/115 (40%), Gaps = 4/115 (3%) Query: 37 TTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWS 96 E I + Y A + D I++G + RK ++ ++ + ++ Sbjct: 16 VIEAIFDQGAYTNIALNQQLSNKALSAKDRALLTEIVYGTVSRKISLEWYLAHYVKDR-- 73 Query: 97 FSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEP-KFINAVL 150 +LD + +L + +L +P I+++ V IA + KF+NA+L Sbjct: 74 -DKLDKWVYYLLMLSLYQLTYLDKLPAHAIVNDAVGIAKNRGNKKGAEKFVNAIL 127 >gi|227496158|ref|ZP_03926464.1| rRNA (cytosine-C(5)-)-methyltransferase [Actinomyces urogenitalis DSM 15434] gi|226834303|gb|EEH66686.1| rRNA (cytosine-C(5)-)-methyltransferase [Actinomyces urogenitalis DSM 15434] Length = 527 Score = 59.3 bits (143), Expect = 2e-07, Method: Composition-based stats. Identities = 31/160 (19%), Positives = 63/160 (39%), Gaps = 20/160 (12%) Query: 4 QDNKKDLKLSHRRG------IARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDV 57 Q + D + S+RR ARL +++AL + + + + Sbjct: 44 QRGQADAEGSNRRRRPSTVDAARLVSLEAL-----------TKVRQDGGFANLVLPPMLD 92 Query: 58 ESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIE 117 + D + + +G + + D +I+ C+ +LD ++ +LR G +L+ Sbjct: 93 AARLDRRDAGFATALTYGTLRLQGRYDAIIAQCVDR--RLDQLDGVVLDVLRLGTHQLLG 150 Query: 118 CHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKE 157 V +S V +A +NAVL ++S+K+ Sbjct: 151 MR-VATHAAVSATVDLASHAAGRGAAGLVNAVLRRISQKD 189 >gi|302817774|ref|XP_002990562.1| hypothetical protein SELMODRAFT_47116 [Selaginella moellendorffii] gi|300141730|gb|EFJ08439.1| hypothetical protein SELMODRAFT_47116 [Selaginella moellendorffii] Length = 196 Score = 59.3 bits (143), Expect = 2e-07, Method: Composition-based stats. Identities = 26/184 (14%), Positives = 51/184 (27%), Gaps = 46/184 (25%) Query: 17 GIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTE---------------------- 54 AR ++ LY + G E++ + R E Sbjct: 12 RAARELSLCVLYAGLVSGSDPLEVLEDRMQARRERVDEKVLDQYDHDAKSGEPLYVSCES 71 Query: 55 -----LDVESVYLHVDLEWF-----------------RVIIHGVMDRKQHIDLLISSCLT 92 + +D II + ++ + ++ L Sbjct: 72 EAKELEFQQEQQSEIDAALLTAHPCVVYNKFVLRYGKEKIIKATSEGREKQEAVVKELLP 131 Query: 93 EKWSFSRLDMI-LCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLD 151 W + +I+ + E+ E ++I+E V +A F G P+ +N L Sbjct: 132 STWKDESNGKLLETTIMHMAIAEI-EVLGTSPNIVINEAVELAKRFCDGFAPRVVNGCLG 190 Query: 152 KVSR 155 R Sbjct: 191 NYFR 194 >gi|297799366|ref|XP_002867567.1| antitermination NusB domain-containing protein [Arabidopsis lyrata subsp. lyrata] gi|297313403|gb|EFH43826.1| antitermination NusB domain-containing protein [Arabidopsis lyrata subsp. lyrata] Length = 300 Score = 59.3 bits (143), Expect = 2e-07, Method: Composition-based stats. Identities = 31/189 (16%), Positives = 55/189 (29%), Gaps = 52/189 (27%) Query: 17 GIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELD-------------------- 56 AR A+ LY + G + + R E D Sbjct: 97 RAARELALVILYAACLEGSDPIRLFEKRINARREPGYEFDKTSLLEYNHMSFGGPPVKTE 156 Query: 57 --------------------------VESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSC 90 + VY + L + + ++ V+D+ ++I Sbjct: 157 TKEEEDELVRHDEKESKIEAEVLSAPPKLVYSKLVLRFAKKLLAAVVDKWDSHVVIIEKI 216 Query: 91 LTEKW---SFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFIN 147 W R+ + SIL + E + ++I+E V +A F G P+ IN Sbjct: 217 SPPDWKSAPAGRI--LEFSILHLAMSE-VAVLETRHPIVINEAVDLAKRFCDGSAPRIIN 273 Query: 148 AVLDKVSRK 156 L + Sbjct: 274 GCLRTFVKD 282 >gi|50914729|ref|YP_060701.1| 16S rRNA m(5)C 967 methyltransferase [Streptococcus pyogenes MGAS10394] gi|139473325|ref|YP_001128040.1| 16S rRNA m(5)C 967 methyltransferase [Streptococcus pyogenes str. Manfredo] gi|50903803|gb|AAT87518.1| 16S rRNA m(5)C 967 methyltransferase [Streptococcus pyogenes MGAS10394] gi|134271571|emb|CAM29796.1| putative ribosomal RNA small subunit methyltransferase [Streptococcus pyogenes str. Manfredo] Length = 440 Score = 59.3 bits (143), Expect = 2e-07, Method: Composition-based stats. Identities = 23/115 (20%), Positives = 47/115 (40%), Gaps = 4/115 (3%) Query: 37 TTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWS 96 E I + Y A + D I++G + RK ++ ++ + ++ Sbjct: 16 VIEAIFDQGAYTNIALNQQLSNKALSAKDRALLTEIVYGTVSRKISLEWYLAHYVKDR-- 73 Query: 97 FSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEP-KFINAVL 150 +LD + +L + +L +P I+++ V IA + KF+NA+L Sbjct: 74 -DKLDKWVYYLLMLSLYQLTYLDKLPAHAIVNDAVGIAKNRGNKKGAEKFVNAIL 127 >gi|78042686|ref|YP_360313.1| sun protein [Carboxydothermus hydrogenoformans Z-2901] gi|77994801|gb|ABB13700.1| sun protein [Carboxydothermus hydrogenoformans Z-2901] Length = 440 Score = 59.3 bits (143), Expect = 2e-07, Method: Composition-based stats. Identities = 23/142 (16%), Positives = 54/142 (38%), Gaps = 22/142 (15%) Query: 20 RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79 R ++ L +++ ++ + ++ D ++ + +GV+ + Sbjct: 4 RELVIKTLVEVEKNNSYVNLLLPKLIA------------NLAKKEDKDFVVELTYGVLKQ 51 Query: 80 KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139 + +D + L ++ S+L + + +R G+ +L VP I+E V Sbjct: 52 LKLLDYMAGKLLKKR---SKLPPFVINAIRVGLYQLYFLDKVPTYAAINETVEAVKR--- 105 Query: 140 GDEPKF---INAVLDKVSRKEE 158 + F +N VL R+ E Sbjct: 106 -NYRGFTGVVNGVLRNFIRRRE 126 >gi|158313556|ref|YP_001506064.1| Fmu (Sun) domain-containing protein [Frankia sp. EAN1pec] gi|158108961|gb|ABW11158.1| Fmu (Sun) domain protein [Frankia sp. EAN1pec] Length = 495 Score = 59.3 bits (143), Expect = 2e-07, Method: Composition-based stats. Identities = 27/155 (17%), Positives = 54/155 (34%), Gaps = 19/155 (12%) Query: 10 LKLSHRRG-----IARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHV 64 + +S R ARL A ++ + E Y L Sbjct: 1 MSVSAPRRGGTTDPARLLA------WEV-----LRAVDERGAYANLLLPALLSGRRLSPR 49 Query: 65 DLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVE 124 D + + +G + + +D ++ + + + +D + LR G +L+ VP Sbjct: 50 DRGFATELTYGSLRAQGTLDGVLDTVTSR--PVASVDPPVRDALRLGAYQLLSTR-VPPR 106 Query: 125 VIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEI 159 ++ V + +F NAVL +V+ + E Sbjct: 107 AAVASTVDLVRATCGERPVRFANAVLRRVAARIEA 141 >gi|325672533|ref|ZP_08152229.1| RNA methyltransferase Sun [Rhodococcus equi ATCC 33707] gi|325556410|gb|EGD26076.1| RNA methyltransferase Sun [Rhodococcus equi ATCC 33707] Length = 495 Score = 59.3 bits (143), Expect = 2e-07, Method: Composition-based stats. Identities = 32/156 (20%), Positives = 54/156 (34%), Gaps = 11/156 (7%) Query: 6 NKKDLKLSHRRGIARLAAVQALYQIDI---IGCSTTEIISEYETYRFCADTELDVESVYL 62 +++ + R R A QA ID + E + Y L E Sbjct: 30 GRRNERPKQAR---RPDAAQA--SIDQPRRAARDVLRAVRERDAYANLVLPGLLRERRLD 84 Query: 63 HVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVP 122 D + +G + +D +I+ C +D L +L G +L+ P Sbjct: 85 GRDAALATELAYGAARARGLLDAVIAEC--AGRPVEEIDGPLLDVLELGAYQLLRTRIAP 142 Query: 123 VEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEE 158 + + V + + F+NAVL +VS K E Sbjct: 143 HAAVAT-SVDLVRAEAGPGKAGFVNAVLRRVSEKTE 177 >gi|116495106|ref|YP_806840.1| tRNA and rRNA cytosine-C5-methylase [Lactobacillus casei ATCC 334] gi|116105256|gb|ABJ70398.1| tRNA and rRNA cytosine-C5-methylase [Lactobacillus casei ATCC 334] Length = 446 Score = 59.0 bits (142), Expect = 2e-07, Method: Composition-based stats. Identities = 19/106 (17%), Positives = 42/106 (39%), Gaps = 5/106 (4%) Query: 65 DLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVE 124 D I++GV+ R+ +D ++ + + +LD + +L V +L VP Sbjct: 41 DAGLLTNIVYGVIQRQLTLDFYLAPFIKGR----KLDNWIRCLLDTAVYQLQYLDKVPAR 96 Query: 125 VIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRSGCVSAITQ 170 + + IA + KF+ VL +++ ++ + Sbjct: 97 AVFFDSTEIAKKLGHQGIAKFVTGVLRN-AQRTGFPDPAAIADPVK 141 >gi|332638217|ref|ZP_08417080.1| 16S rRNA methyltransferase B [Weissella cibaria KACC 11862] Length = 457 Score = 59.0 bits (142), Expect = 2e-07, Method: Composition-based stats. Identities = 22/133 (16%), Positives = 52/133 (39%), Gaps = 9/133 (6%) Query: 29 QIDIIGCSTTEIISEYETYRFCADTELDVESVYLHV-----DLEWFRVIIHGVMDRKQHI 83 + ++ + E R A + L + + D+ +++GV+ R+ + Sbjct: 11 EWELHNARAMAV-RTLEKIRNGAYSNLQLNNTVKQAELDERDVHLMTTMVYGVIQRRMTL 69 Query: 84 DLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEP 143 + ++ + + +LD + +L + ++ VP I E + IA + Sbjct: 70 EYWLTPFVKK---PEKLDAWVRELLYISLFQMKFLDKVPTHAIFDEAINIAKRRGHDGVR 126 Query: 144 KFINAVLDKVSRK 156 KF+ VL + R+ Sbjct: 127 KFVTGVLHAIDRE 139 >gi|227872150|ref|ZP_03990520.1| possible rRNA (cytosine-5-)-methyltransferase [Oribacterium sinus F0268] gi|227842008|gb|EEJ52268.1| possible rRNA (cytosine-5-)-methyltransferase [Oribacterium sinus F0268] Length = 449 Score = 59.0 bits (142), Expect = 2e-07, Method: Composition-based stats. Identities = 26/90 (28%), Positives = 43/90 (47%), Gaps = 3/90 (3%) Query: 74 HGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCI 133 HG+++R +D +IS + K +L ++ LR + +L+ +P I+ E V Sbjct: 90 HGILERYLQLDYVISLYSSVK--LKKLKPVVLLSLRIAIYQLLFMDKIPEHAIVDEAVKS 147 Query: 134 AHDFFYGDEPKFINAVLDKVS-RKEEIKRS 162 F+NAVL K+ KEEIK+ Sbjct: 148 IKKRKLQGLVPFVNAVLRKIVGEKEEIKKK 177 >gi|58337594|ref|YP_194179.1| rRNA methylase [Lactobacillus acidophilus NCFM] gi|58254911|gb|AAV43148.1| rRNA methylase [Lactobacillus acidophilus NCFM] Length = 455 Score = 59.0 bits (142), Expect = 2e-07, Method: Composition-based stats. Identities = 20/99 (20%), Positives = 39/99 (39%), Gaps = 14/99 (14%) Query: 64 VDLEWFRVIIHGVMDRKQ----HIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECH 119 D I++G + + ++ LI + LTEK+ + +L + ++I Sbjct: 53 ADQNLATRIVYGTIQYRIFLEYQLNGLIKTKLTEKY--------IKPLLLMSLYQIIFLD 104 Query: 120 SVPVEVIISEYVCIAHDFFYGDEPKF--INAVLDKVSRK 156 VP I+ E +A F + +N +L R+ Sbjct: 105 KVPNRAILDEANKLAKKFGKHHSSGYRIVNGILRSFIRR 143 >gi|111024114|ref|YP_707086.1| ribosomal RNA small subunit methyltransferase [Rhodococcus jostii RHA1] gi|110823644|gb|ABG98928.1| ribosomal RNA small subunit methyltransferase [Rhodococcus jostii RHA1] Length = 475 Score = 59.0 bits (142), Expect = 2e-07, Method: Composition-based stats. Identities = 30/149 (20%), Positives = 54/149 (36%), Gaps = 4/149 (2%) Query: 13 SHRRGIARLAAVQ-ALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71 + R R A Q L Q + + E + Y L E D Sbjct: 20 NRPRQARRPDASQSGLDQPRLAARDVLRAVRERDAYANLVLPGLLRERRLDGRDAALATE 79 Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131 + +G + +D +I+ C + +D L +L+ G +L+ P + + V Sbjct: 80 LAYGAARARGLLDAVIADC--AGRPIAEIDGPLLDVLQLGAYQLLRTRVAPHAAVAT-SV 136 Query: 132 CIAHDFFYGDEPKFINAVLDKVSRKEEIK 160 + + F+NAVL +VS + E + Sbjct: 137 DLVRAEAGPGKAGFVNAVLRRVSERSEAE 165 >gi|227904234|ref|ZP_04022039.1| rRNA SAM-dependent methyltransferase RmsB [Lactobacillus acidophilus ATCC 4796] gi|227867882|gb|EEJ75303.1| rRNA SAM-dependent methyltransferase RmsB [Lactobacillus acidophilus ATCC 4796] Length = 446 Score = 59.0 bits (142), Expect = 2e-07, Method: Composition-based stats. Identities = 20/99 (20%), Positives = 39/99 (39%), Gaps = 14/99 (14%) Query: 64 VDLEWFRVIIHGVMDRKQ----HIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECH 119 D I++G + + ++ LI + LTEK+ + +L + ++I Sbjct: 44 ADQNLATRIVYGTIQYRIFLEYQLNGLIKTKLTEKY--------IKPLLLMSLYQIIFLD 95 Query: 120 SVPVEVIISEYVCIAHDFFYGDEPKF--INAVLDKVSRK 156 VP I+ E +A F + +N +L R+ Sbjct: 96 KVPNRAILDEANKLAKKFGKHHSSGYRIVNGILRSFIRR 134 >gi|169629894|ref|YP_001703543.1| Fmu protein (SUN protein) [Mycobacterium abscessus ATCC 19977] gi|169241861|emb|CAM62889.1| Probable Fmu protein (SUN protein) [Mycobacterium abscessus] Length = 471 Score = 59.0 bits (142), Expect = 2e-07, Method: Composition-based stats. Identities = 37/163 (22%), Positives = 64/163 (39%), Gaps = 20/163 (12%) Query: 2 TIQDNKKDLKLSHR-RGIA---RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDV 57 + QD+++ + R R R AA+ L +S + Y A L Sbjct: 10 SNQDSRRSAGPAERARRKLDPPRQAALDVL-----------RAVSRQDAYANLALPALLR 58 Query: 58 ESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIE 117 E D + + +G + +D +I + + ++D L LR G +L+ Sbjct: 59 ERGITGRDAAFATELTYGTCRARGLLDAVIEAA--AGRTIDQVDEGLRDPLRLGAYQLL- 115 Query: 118 CHSVPVEVIISEYVC-IAHDFFYGDEPKFINAVLDKVSRKEEI 159 V +S V +A +F G F+NAVL +SR++E Sbjct: 116 RTRVEPHAALSTTVDAVAVEFDQGR-AGFVNAVLRTISRRDEA 157 >gi|256845813|ref|ZP_05551271.1| ribosomal RNA small subunit methyltransferase B [Fusobacterium sp. 3_1_36A2] gi|256719372|gb|EEU32927.1| ribosomal RNA small subunit methyltransferase B [Fusobacterium sp. 3_1_36A2] Length = 435 Score = 59.0 bits (142), Expect = 2e-07, Method: Composition-based stats. Identities = 18/99 (18%), Positives = 42/99 (42%), Gaps = 12/99 (12%) Query: 65 DLEWFRVIIHGVMDRKQHIDLLISSC---LTEKWSFSRLDMILCSILRAGVLELIECHSV 121 + + I +GV+ K+ +D +I + ++W + ++LR + ++ Sbjct: 37 EKAFITEIFYGVIRNKKFLDYIIEKNTKEIKKEW--------IRNLLRISIYQITFM-DS 87 Query: 122 PVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIK 160 + I+ E +A + KFIN L R ++++ Sbjct: 88 DNKGIVWEATELAKKKYGVPISKFINGTLRNYLRNKDLE 126 >gi|291280368|ref|YP_003497203.1| tRNA/rRNA methyltransferase [Deferribacter desulfuricans SSM1] gi|290755070|dbj|BAI81447.1| tRNA/rRNA methyltransferase [Deferribacter desulfuricans SSM1] Length = 389 Score = 59.0 bits (142), Expect = 2e-07, Method: Composition-based stats. Identities = 18/106 (16%), Positives = 42/106 (39%), Gaps = 9/106 (8%) Query: 54 ELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVL 113 EL + + +++R I I +++S L ++ + L G Sbjct: 25 ELKEDFFHDSPYRKFYRKIYFETFKHLGFIQYILTSYLKKETPIESIAA-----LTLGTA 79 Query: 114 ELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEI 159 +++ +P ++E V + G + +NAVL +++ +E Sbjct: 80 QILFLSDIPEYAAVNESVNLVK----GKQKSLVNAVLRRIASNKEA 121 >gi|224541737|ref|ZP_03682276.1| hypothetical protein CATMIT_00909 [Catenibacterium mitsuokai DSM 15897] gi|224525341|gb|EEF94446.1| hypothetical protein CATMIT_00909 [Catenibacterium mitsuokai DSM 15897] Length = 439 Score = 59.0 bits (142), Expect = 2e-07, Method: Composition-based stats. Identities = 17/124 (13%), Positives = 48/124 (38%), Gaps = 8/124 (6%) Query: 35 CSTTEIISEYETYRFCADTELD--VESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLT 92 + +I+ +YE + L+ + + + +++G + + +++ + + Sbjct: 30 DTALDILIDYEKNESYLNITLNHTLTQDFSPSERGLITTLVYGTIQNRLYLEYQLEPHIH 89 Query: 93 EKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDK 152 +RL ++ +L + + P I++E V I + INA+L Sbjct: 90 -----TRLKVVEKMLLLMSLYQ-HFYLDTPDYAIVNEAVEIIKERRNKRAGGMINAILHS 143 Query: 153 VSRK 156 ++ Sbjct: 144 CFKE 147 >gi|300784671|ref|YP_003764962.1| ribosomal RNA small subunit methyltransferase B [Amycolatopsis mediterranei U32] gi|299794185|gb|ADJ44560.1| ribosomal RNA small subunit methyltransferase B [Amycolatopsis mediterranei U32] Length = 474 Score = 58.6 bits (141), Expect = 3e-07, Method: Composition-based stats. Identities = 33/161 (20%), Positives = 53/161 (32%), Gaps = 19/161 (11%) Query: 3 IQDNKKDLKLSHRRGI-----ARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDV 57 Q + + R AR AA L + + Y +L Sbjct: 12 PQRGRPAPRKEGPRRPPEVDPARQAAFDVL-----------AAVRTKDAYANLVLPDLLR 60 Query: 58 ESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIE 117 E D + +G + +D +I SC + D + LR GV +L+ Sbjct: 61 ERRITGRDAALATELTYGTSRAQGLLDAIIESCAER--PLKQTDPAVLDALRLGVYQLL- 117 Query: 118 CHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEE 158 +P ++ V + F NA+L KVS K+E Sbjct: 118 RTRIPEHAAVTSTVDLVRAEAGSWATGFANAILRKVSEKDE 158 >gi|257784669|ref|YP_003179886.1| NusB/RsmB/TIM44 [Atopobium parvulum DSM 20469] gi|257473176|gb|ACV51295.1| NusB/RsmB/TIM44 [Atopobium parvulum DSM 20469] Length = 463 Score = 58.6 bits (141), Expect = 3e-07, Method: Composition-based stats. Identities = 25/153 (16%), Positives = 49/153 (32%), Gaps = 17/153 (11%) Query: 19 ARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMD 78 AR A QA ++ + + E + + S D + + G Sbjct: 7 ARKVAYQAFFECRRNNLCVRDYLRESKDF-----------SELSAQDKAFATRLALGATL 55 Query: 79 RKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFF 138 K +D + + L + + R V E++ + IS+ V + Sbjct: 56 TKGKLDEALKNHLKSGIHLE--PKVQDA-FRIAVFEVLY-LETRRDAAISQGVELVKSVS 111 Query: 139 YGDEPKFINAVLDKVSR-KEEIKRSGCVSAITQ 170 NAVL K+S + + R+ ++ Sbjct: 112 -KRSSGLANAVLRKISEHEANLARAKDPHTPSE 143 >gi|71904040|ref|YP_280843.1| 16S rRNA m(5)C 967 methyltransferase [Streptococcus pyogenes MGAS6180] gi|71803135|gb|AAX72488.1| 16S rRNA m(5)C 967 methyltransferase [Streptococcus pyogenes MGAS6180] Length = 452 Score = 58.6 bits (141), Expect = 3e-07, Method: Composition-based stats. Identities = 24/113 (21%), Positives = 48/113 (42%), Gaps = 4/113 (3%) Query: 39 EIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFS 98 E I + Y A + D I++G + RK ++ ++ + ++ Sbjct: 30 EHIFDQGAYTNIALNQQLSNKALSAKDRALLTEIVYGTVSRKISLEWYLAHYVKDR---D 86 Query: 99 RLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEP-KFINAVL 150 +LD + +L + +LI +P I+++ V IA + KF+NA+L Sbjct: 87 KLDKWVYYLLMLSLYQLIYLDKLPAHAIVNDAVGIAKNRGNKKGAEKFVNAIL 139 >gi|237742476|ref|ZP_04572957.1| 16S rRNA m(5)C 967 methyltransferase [Fusobacterium sp. 4_1_13] gi|294785012|ref|ZP_06750300.1| ribosomal RNA small subunit methyltransferase B [Fusobacterium sp. 3_1_27] gi|229430124|gb|EEO40336.1| 16S rRNA m(5)C 967 methyltransferase [Fusobacterium sp. 4_1_13] gi|294486726|gb|EFG34088.1| ribosomal RNA small subunit methyltransferase B [Fusobacterium sp. 3_1_27] Length = 435 Score = 58.6 bits (141), Expect = 3e-07, Method: Composition-based stats. Identities = 19/99 (19%), Positives = 41/99 (41%), Gaps = 12/99 (12%) Query: 65 DLEWFRVIIHGVMDRKQHIDLLISSC---LTEKWSFSRLDMILCSILRAGVLELIECHSV 121 + + I +GV+ K+ +D +I + ++W + ++LR + ++ S Sbjct: 37 EKAFITEIFYGVIRNKKFLDYIIEKNTKEIKKEW--------IRNLLRISIYQITFMDSD 88 Query: 122 PVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIK 160 V+ E +A + KFIN L R ++ + Sbjct: 89 NKGVVW-EATELAKKKYGVPISKFINGTLRNYLRNKDSE 126 >gi|311742368|ref|ZP_07716177.1| RNA methyltransferase Sun [Aeromicrobium marinum DSM 15272] gi|311313996|gb|EFQ83904.1| RNA methyltransferase Sun [Aeromicrobium marinum DSM 15272] Length = 428 Score = 58.6 bits (141), Expect = 3e-07, Method: Composition-based stats. Identities = 26/138 (18%), Positives = 48/138 (34%), Gaps = 14/138 (10%) Query: 20 RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79 R A AL + E + Y + E D + ++HG + R Sbjct: 6 RAIAFHAL-----------RAVDERDAYVNLVLPAMLDEHHLEGRDAAFATELVHGTVRR 54 Query: 80 KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139 + D +I + +D + LR G +L+ VP +S V + Sbjct: 55 QGTYDAIIRQ--VSGRDLASIDPPVLDALRLGAHQLLSMR-VPAHAAVSTTVDVVRREIG 111 Query: 140 GDEPKFINAVLDKVSRKE 157 F+NA+L ++ ++ Sbjct: 112 HKPVGFVNALLRRIGAQD 129 >gi|302341793|ref|YP_003806322.1| sun protein [Desulfarculus baarsii DSM 2075] gi|301638406|gb|ADK83728.1| sun protein [Desulfarculus baarsii DSM 2075] Length = 443 Score = 58.6 bits (141), Expect = 3e-07, Method: Composition-based stats. Identities = 24/149 (16%), Positives = 51/149 (34%), Gaps = 15/149 (10%) Query: 20 RLAAVQALYQIDIIGCSTTEIISE-YETYRFCADTELDVESVYLHVDLEWFRVIIHGVMD 78 RL A+ L Q++ +++S ++ + D + H V+ Sbjct: 4 RLTALDVLVQLESSPKHLDKLLSRAFQRH-----------PAAQARDKAMATNLTHTVLR 52 Query: 79 RKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFF 138 + +D L++ ++ ++LD + + LR G EL+ + P + V Sbjct: 53 HRAWLDHLLTPLVSR--PLAKLDAPVRAALRLGAAELV-VLATPAHAAVGATVEAVKAGP 109 Query: 139 YGDEPKFINAVLDKVSRKEEIKRSGCVSA 167 +N VL ++R Sbjct: 110 AAKASGLVNGVLRALTRALPAAAQAEPPG 138 >gi|309806256|ref|ZP_07700269.1| NusB family protein [Lactobacillus iners LactinV 03V1-b] gi|308167240|gb|EFO69406.1| NusB family protein [Lactobacillus iners LactinV 03V1-b] Length = 284 Score = 58.6 bits (141), Expect = 3e-07, Method: Composition-based stats. Identities = 26/149 (17%), Positives = 51/149 (34%), Gaps = 29/149 (19%) Query: 19 ARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMD 78 AR A+ L +I + ++Y A +S +D I++G + Sbjct: 5 ARSVALDTL----------LKIFKQ-KSYSNIALNNALEKSQLSPIDKALTTQIVYGTVQ 53 Query: 79 RKQHID----LLISSCLTEK--WSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVC 132 K +++ L+ + L E W L + +P I+ E Sbjct: 54 YKLYLEYQLKSLVKTKLKEDYLWPL----------LLMSAYQYFFLDKIPTASIVDEANK 103 Query: 133 IAHDFF--YGDEPKFINAVLDKVSRKEEI 159 +A + + +N +L + R+ EI Sbjct: 104 LAKSYSPKGSQSYRLVNGILRSLVRRGEI 132 >gi|253582362|ref|ZP_04859585.1| rRNA methyltransferase [Fusobacterium varium ATCC 27725] gi|251835901|gb|EES64439.1| rRNA methyltransferase [Fusobacterium varium ATCC 27725] Length = 432 Score = 58.6 bits (141), Expect = 3e-07, Method: Composition-based stats. Identities = 24/119 (20%), Positives = 48/119 (40%), Gaps = 12/119 (10%) Query: 43 EYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLT---EKWSFSR 99 E Y A E E++ + + + +GV+ +K +D I+ ++ + W Sbjct: 15 ENGKYSNIALNEYFKENILNRKERGFITELFYGVIRKKIFLDYEINKRVSSIKKDW---- 70 Query: 100 LDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEE 158 + ++LR + ++ S V+ E +A F KF+N VL R+ + Sbjct: 71 ----IRNLLRISIYQITFMKSDNKGVVW-EASELAKKKFGVPVGKFVNGVLRGYLREMD 124 >gi|329894840|ref|ZP_08270640.1| Ribosomal RNA small subunit methyltransferase B [gamma proteobacterium IMCC3088] gi|328922734|gb|EGG30068.1| Ribosomal RNA small subunit methyltransferase B [gamma proteobacterium IMCC3088] Length = 425 Score = 58.6 bits (141), Expect = 3e-07, Method: Composition-based stats. Identities = 27/151 (17%), Positives = 60/151 (39%), Gaps = 19/151 (12%) Query: 17 GIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGV 76 IARL+AV+A +++++ + D LD + + + G Sbjct: 4 SIARLSAVRA----------VSQVLTGHAIRVSDFDQGLDPQQ------KAFAHQLAQGT 47 Query: 77 MDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHD 136 ++ + L++ L++ ++ +IL G+ ++ P ++E V +A Sbjct: 48 INALPRLSGLLNQLLSKPIKPKEAEV--HAILLTGLYQIEYMR-TPDHAAVNESVNLAKK 104 Query: 137 FFYGDEPKFINAVLDKVSRKEEIKRSGCVSA 167 K IN L + R+++ R+ +A Sbjct: 105 LKKTWAIKLINGCLRRFLREQDTLRANLTTA 135 >gi|309809906|ref|ZP_07703754.1| NusB family protein [Lactobacillus iners SPIN 2503V10-D] gi|308169694|gb|EFO71739.1| NusB family protein [Lactobacillus iners SPIN 2503V10-D] Length = 284 Score = 58.6 bits (141), Expect = 3e-07, Method: Composition-based stats. Identities = 25/149 (16%), Positives = 50/149 (33%), Gaps = 29/149 (19%) Query: 19 ARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMD 78 AR A+ L +I + + L+ +S +D I++G + Sbjct: 5 ARSVALDTL----------LKIFKQKSYSNLALNNALE-KSKLSPIDKALTTQIVYGTVQ 53 Query: 79 RKQHID----LLISSCLTEK--WSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVC 132 K +++ L+ + L E W L + +P I+ E Sbjct: 54 YKLYLEYQLKSLVKTKLKEDYLWPL----------LLMSAYQYFFLDKIPTASIVDEANK 103 Query: 133 IAHDFF--YGDEPKFINAVLDKVSRKEEI 159 +A + + +N +L + R+ EI Sbjct: 104 LAKSYSPKGSQSYRLVNGILRSLVRRGEI 132 >gi|229493567|ref|ZP_04387352.1| Fmu protein [Rhodococcus erythropolis SK121] gi|229319528|gb|EEN85364.1| Fmu protein [Rhodococcus erythropolis SK121] Length = 482 Score = 58.6 bits (141), Expect = 3e-07, Method: Composition-based stats. Identities = 22/129 (17%), Positives = 44/129 (34%), Gaps = 3/129 (2%) Query: 32 IIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCL 91 + + E + Y L + D + +G + +D +I+ Sbjct: 45 LAARDVLRAVRERDAYANLVLPGLLRDRKLDARDAALATELAYGAARAQGLLDAVIAHA- 103 Query: 92 TEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLD 151 +D L +LR G +L+ P + + V + F+NAVL Sbjct: 104 -AGRPIEEIDGTLLDVLRLGSYQLLRTRVAPHAAVAT-SVDLVRAENGQGRAGFVNAVLR 161 Query: 152 KVSRKEEIK 160 +VS + + + Sbjct: 162 RVSERTQEE 170 >gi|315503248|ref|YP_004082135.1| fmu (sun) domain protein [Micromonospora sp. L5] gi|315409867|gb|ADU07984.1| Fmu (Sun) domain protein [Micromonospora sp. L5] Length = 541 Score = 58.6 bits (141), Expect = 3e-07, Method: Composition-based stats. Identities = 19/100 (19%), Positives = 40/100 (40%), Gaps = 4/100 (4%) Query: 58 ESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIE 117 E+ D + + +G + +D +++ R+D + LR G +++ Sbjct: 123 EAGLTGRDAAFATELTYGTLRHTGTLDAIVTDA--AGRDVQRIDPPVRDALRLGAYQILH 180 Query: 118 CHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKE 157 VP +S V + G F NAVL +++ ++ Sbjct: 181 TR-VPAHAAVSSTVDLVRSVGPG-ATGFANAVLREITSRD 218 >gi|56807939|ref|ZP_00365759.1| COG0144: tRNA and rRNA cytosine-C5-methylases [Streptococcus pyogenes M49 591] Length = 320 Score = 58.6 bits (141), Expect = 3e-07, Method: Composition-based stats. Identities = 23/115 (20%), Positives = 47/115 (40%), Gaps = 4/115 (3%) Query: 37 TTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWS 96 E I + Y A + D I++G + RK ++ ++ + ++ Sbjct: 16 VIEAIFDQGAYTNIALNQQLSNKALSAKDRALLTEIVYGTVSRKISLEWYLAHYVKDR-- 73 Query: 97 FSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEP-KFINAVL 150 +LD + +L + +L +P I+++ V IA + KF+NA+L Sbjct: 74 -DKLDKWVYYLLMLSLYQLTYLDKLPAHAIVNDAVGIAKNRGNKKGAEKFVNAIL 127 >gi|297746508|emb|CBI16564.3| unnamed protein product [Vitis vinifera] Length = 218 Score = 58.6 bits (141), Expect = 3e-07, Method: Composition-based stats. Identities = 30/142 (21%), Positives = 54/142 (38%), Gaps = 16/142 (11%) Query: 30 IDIIGCSTT-EIISEYETYRFCADTELDVES---------VYLHVDLEWFRVIIHGVMDR 79 + G T E + E + + E +E+ VY + L + R ++ V+D+ Sbjct: 64 MSFGGPPVTTETVEEADELLRNNEKESAIEAEVLSAPPKLVYGKLILRFTRKLLVAVVDK 123 Query: 80 KQHIDLLISSCLTEKWSFS---RLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHD 136 L+I W R+ + IL + E+ +++I+E V +A Sbjct: 124 WNSHVLVIDKVAPPNWKNEPAGRI--LELCILHLAMSEI-AVLGTRHQIVINEAVDLAKR 180 Query: 137 FFYGDEPKFINAVLDKVSRKEE 158 F G P+ IN L + E Sbjct: 181 FCDGAAPRIINGCLRTFVKDLE 202 >gi|302866833|ref|YP_003835470.1| Fmu (Sun) domain-containing protein [Micromonospora aurantiaca ATCC 27029] gi|302569692|gb|ADL45894.1| Fmu (Sun) domain protein [Micromonospora aurantiaca ATCC 27029] Length = 549 Score = 58.6 bits (141), Expect = 3e-07, Method: Composition-based stats. Identities = 19/100 (19%), Positives = 40/100 (40%), Gaps = 4/100 (4%) Query: 58 ESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIE 117 E+ D + + +G + +D +++ R+D + LR G +++ Sbjct: 131 EAGLTGRDAAFATELTYGTLRHTGTLDAIVTDA--AGRDVQRIDPPVRDALRLGAYQILH 188 Query: 118 CHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKE 157 VP +S V + G F NAVL +++ ++ Sbjct: 189 TR-VPAHAAVSSTVDLVRSVGPG-ATGFANAVLREITSRD 226 >gi|254295350|ref|YP_003061373.1| Fmu (Sun) domain protein [Hirschia baltica ATCC 49814] gi|254043881|gb|ACT60676.1| Fmu (Sun) domain protein [Hirschia baltica ATCC 49814] Length = 487 Score = 58.6 bits (141), Expect = 3e-07, Method: Composition-based stats. Identities = 32/152 (21%), Positives = 54/152 (35%), Gaps = 15/152 (9%) Query: 18 IARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVM 77 +R AA L +I G E ++ + +F + E D + R I + Sbjct: 62 QSRRAAADILMRIVHEGADMDEALA---SSKFFDELEGP--------DRGFARAIASAAL 110 Query: 78 DRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDF 137 ID + + L ++D + S+LR G +L P + V A + Sbjct: 111 RAFGRIDDALETYLDR--PLEKIDPAVLSLLRVGCAQL-WVLKAPSYAAVDATVEAARQW 167 Query: 138 F-YGDEPKFINAVLDKVSRKEEIKRSGCVSAI 168 +NA+L + R+ E S S I Sbjct: 168 KPASRGGGMVNAILRRAGREPEAYESLPASRI 199 >gi|296327374|ref|ZP_06869923.1| ribosomal RNA small subunit methyltransferase B [Fusobacterium nucleatum subsp. nucleatum ATCC 23726] gi|296155489|gb|EFG96257.1| ribosomal RNA small subunit methyltransferase B [Fusobacterium nucleatum subsp. nucleatum ATCC 23726] Length = 435 Score = 58.2 bits (140), Expect = 3e-07, Method: Composition-based stats. Identities = 19/99 (19%), Positives = 42/99 (42%), Gaps = 12/99 (12%) Query: 65 DLEWFRVIIHGVMDRKQHIDLLISSC---LTEKWSFSRLDMILCSILRAGVLELIECHSV 121 + + I +GV+ K+ +D +I + ++W + ++LR + ++ S Sbjct: 37 EKAFITEIFYGVIRNKKFLDYIIEKNTKEIKKEW--------IRNLLRISIYQITFMDSD 88 Query: 122 PVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIK 160 V+ E +A + KFIN L R ++++ Sbjct: 89 DKGVVW-EGTELAKKKYGIPISKFINGTLRNYLRNKDLE 126 >gi|226306504|ref|YP_002766464.1| rRNA methyltransferase [Rhodococcus erythropolis PR4] gi|226185621|dbj|BAH33725.1| putative rRNA methyltransferase [Rhodococcus erythropolis PR4] Length = 482 Score = 58.2 bits (140), Expect = 3e-07, Method: Composition-based stats. Identities = 22/127 (17%), Positives = 43/127 (33%), Gaps = 3/127 (2%) Query: 32 IIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCL 91 + + E + Y L + D + +G + +D +I+ Sbjct: 45 LAARDVLRAVRERDAYANLVLPGLLRDRKLDARDAALATELAYGAARAQGLLDAVIAHA- 103 Query: 92 TEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLD 151 +D L +LR G +L+ P + + V + F+NAVL Sbjct: 104 -AGRPIEEIDGTLLDVLRLGSYQLLRTRVAPHAAVAT-SVDLVRAENGQGRAGFVNAVLR 161 Query: 152 KVSRKEE 158 +VS + + Sbjct: 162 RVSERTQ 168 >gi|309804769|ref|ZP_07698833.1| NusB family protein [Lactobacillus iners LactinV 09V1-c] gi|308165879|gb|EFO68098.1| NusB family protein [Lactobacillus iners LactinV 09V1-c] Length = 284 Score = 58.2 bits (140), Expect = 3e-07, Method: Composition-based stats. Identities = 26/149 (17%), Positives = 51/149 (34%), Gaps = 29/149 (19%) Query: 19 ARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMD 78 AR A+ L +I + ++Y A +S +D I++G + Sbjct: 5 ARSVALDTL----------LKIFKQ-KSYSNIALNNALEKSQLSPIDKALTTQIVYGTVQ 53 Query: 79 RKQHID----LLISSCLTEK--WSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVC 132 K +++ L+ + L E W L + +P I+ E Sbjct: 54 YKLYLEYQLKSLVKTKLKEDYLWPL----------LLMSAYQYFFLDKIPTASIVDEANK 103 Query: 133 IAHDFF--YGDEPKFINAVLDKVSRKEEI 159 +A + + +N +L + R+ EI Sbjct: 104 LAKSYSPKGSQSYRLVNGILRSLVRRGEI 132 >gi|282891223|ref|ZP_06299726.1| hypothetical protein pah_c048o056 [Parachlamydia acanthamoebae str. Hall's coccus] gi|281498916|gb|EFB41232.1| hypothetical protein pah_c048o056 [Parachlamydia acanthamoebae str. Hall's coccus] Length = 417 Score = 58.2 bits (140), Expect = 3e-07, Method: Composition-based stats. Identities = 30/135 (22%), Positives = 55/135 (40%), Gaps = 13/135 (9%) Query: 19 ARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMD 78 AR AA A+Y G +E + ++ + +D + + I +G + Sbjct: 6 AREAAFLAVYSFLKEGKFLSESLENWKQ-----------KESPSSLDFSFAQDIAYGSVR 54 Query: 79 RKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFF 138 +D I+ E+ S S L + S+LR + + S P+ I E +A + Sbjct: 55 MALALD-YIAKSTAERQSLS-LKVKERSLLRTAIYQAAFQRSTPLYAIGQESGNLAKKYC 112 Query: 139 YGDEPKFINAVLDKV 153 + F+NA+L K+ Sbjct: 113 HPTFSSFLNALLRKL 127 >gi|257470180|ref|ZP_05634271.1| 16S rRNA m(5)C 967 methyltransferase [Fusobacterium ulcerans ATCC 49185] gi|317064397|ref|ZP_07928882.1| 16S rRNA m(5)C 967 methyltransferase [Fusobacterium ulcerans ATCC 49185] gi|313690073|gb|EFS26908.1| 16S rRNA m(5)C 967 methyltransferase [Fusobacterium ulcerans ATCC 49185] Length = 432 Score = 58.2 bits (140), Expect = 3e-07, Method: Composition-based stats. Identities = 24/119 (20%), Positives = 47/119 (39%), Gaps = 12/119 (10%) Query: 43 EYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLT---EKWSFSR 99 E Y A + E+ + + + +GV+ +K +D I+ ++ + W Sbjct: 15 ENGKYSNIALNDYFRENTLNRKERGFITELFYGVIRKKIFLDYEINKRVSTIKKDW---- 70 Query: 100 LDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEE 158 + ++LR + ++ S V+ E +A F KF+N VL R+ E Sbjct: 71 ----IRNLLRISIYQITFMKSDNKGVVW-EASELAKKKFGVPVGKFVNGVLRGYLREME 124 >gi|228922619|ref|ZP_04085919.1| Ribosomal RNA small subunit methyltransferase B [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228837048|gb|EEM82389.1| Ribosomal RNA small subunit methyltransferase B [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] Length = 368 Score = 58.2 bits (140), Expect = 3e-07, Method: Composition-based stats. Identities = 14/49 (28%), Positives = 21/49 (42%) Query: 108 LRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRK 156 LR + ++I VP I E V IA + +N VL + R+ Sbjct: 2 LRLSLYQMIYLDRVPERAAIHEAVEIAKRRGHKGIAGMVNGVLRSIQRE 50 >gi|19703658|ref|NP_603220.1| 16S rRNA m(5)C 967 methyltransferase [Fusobacterium nucleatum subsp. nucleatum ATCC 25586] gi|19713776|gb|AAL94519.1| 16S rRNA m(5)C 967 methyltransferase [Fusobacterium nucleatum subsp. nucleatum ATCC 25586] Length = 435 Score = 58.2 bits (140), Expect = 3e-07, Method: Composition-based stats. Identities = 19/99 (19%), Positives = 42/99 (42%), Gaps = 12/99 (12%) Query: 65 DLEWFRVIIHGVMDRKQHIDLLISSC---LTEKWSFSRLDMILCSILRAGVLELIECHSV 121 + + I +GV+ K+ +D +I + ++W + ++LR + ++ S Sbjct: 37 EKAFITEIFYGVIRNKKFLDYIIEKNTKEIKKEW--------IRNLLRISIYQITFMDSD 88 Query: 122 PVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIK 160 V+ E +A + KFIN L R ++++ Sbjct: 89 DKGVVW-EGTELAKKKYGIPISKFINGTLRNYLRNKDLE 126 >gi|325695223|gb|EGD37124.1| RNA methyltransferase Sun [Streptococcus sanguinis SK150] Length = 438 Score = 58.2 bits (140), Expect = 4e-07, Method: Composition-based stats. Identities = 24/99 (24%), Positives = 45/99 (45%), Gaps = 4/99 (4%) Query: 58 ESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIE 117 +S D +++G + RK ++ +S L E +LD L +L + +++ Sbjct: 36 QSSLNQADKGLVTELVYGTVARKITLEWYLS-HLIEDR--DKLDNWLYILLMLSLYQMLY 92 Query: 118 CHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRK 156 +P ++ E V IA G KF NA+L ++ R+ Sbjct: 93 LDKIPQHAVVHEAVEIAKIRKRG-SEKFANALLRRIERE 130 >gi|224073118|ref|XP_002303980.1| predicted protein [Populus trichocarpa] gi|222841412|gb|EEE78959.1| predicted protein [Populus trichocarpa] Length = 218 Score = 58.2 bits (140), Expect = 4e-07, Method: Composition-based stats. Identities = 33/189 (17%), Positives = 60/189 (31%), Gaps = 52/189 (27%) Query: 17 GIARLAAVQALYQIDIIGCST-------------------------------------TE 39 AR A+ +Y + G TE Sbjct: 15 RAARELALLIIYAACLEGSDPIRLFEKRMNARREPGYEFDKASLLEYNHMSFGGPPVTTE 74 Query: 40 IISEYETYRFCADTELDVES---------VYLHVDLEWFRVIIHGVMDRKQHIDLLISSC 90 + E + + + E +E+ VY + L + R ++ V+D+ L+I Sbjct: 75 TVEEADELQLSDEKESAIEAEVLSAPPKLVYSKLLLRFTRKLLVAVVDKWDSHVLVIDKV 134 Query: 91 LTEKWSFS---RLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFIN 147 W R+ + IL + E+ +++I+E V +A F G P+ IN Sbjct: 135 SPPNWKNEPAGRI--LEFCILHMAMSEIT-VLGTRHQIVINEAVDLAKRFCDGAGPRIIN 191 Query: 148 AVLDKVSRK 156 L + Sbjct: 192 GCLRTFLKD 200 >gi|24378967|ref|NP_720922.1| putative RNA-binding Sun protein; rRNA methylase [Streptococcus mutans UA159] gi|24376856|gb|AAN58228.1|AE014894_5 putative RNA-binding Sun protein; possible rRNA methylase [Streptococcus mutans UA159] Length = 437 Score = 58.2 bits (140), Expect = 4e-07, Method: Composition-based stats. Identities = 27/147 (18%), Positives = 59/147 (40%), Gaps = 15/147 (10%) Query: 12 LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71 + +++ AR A+ L TEI + Y A + D Sbjct: 1 MGNKQPTARSGALFVL----------TEIFDK-TAYSNIALRHYLSKHKLSQADRSLLTE 49 Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131 +++G + RK ++ ++ + ++ + +L + +++ +P I++E V Sbjct: 50 LVYGTLTRKITLEWYLAHYIEDRNKLE---TWIYYLLMLSLYQILYLDKIPQHAIVNEAV 106 Query: 132 CIAHDFFYGDEPKFINAVLDKVSRKEE 158 +A G E K +NAVL + R++ Sbjct: 107 DLAKSRNRGAE-KLVNAVLRQFLRQKR 132 >gi|325697709|gb|EGD39594.1| RNA methyltransferase Sun [Streptococcus sanguinis SK160] Length = 438 Score = 58.2 bits (140), Expect = 4e-07, Method: Composition-based stats. Identities = 24/99 (24%), Positives = 45/99 (45%), Gaps = 4/99 (4%) Query: 58 ESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIE 117 +S D +++G + RK ++ +S L E +LD L +L + +++ Sbjct: 36 QSSLNQADKGLVTELVYGTVARKITLEWYLS-HLIEDR--DKLDNWLYILLMLSLYQMLY 92 Query: 118 CHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRK 156 +P ++ E V IA G KF NA+L ++ R+ Sbjct: 93 LDKIPQHAVVHEAVEIAKIRKRG-SEKFANALLRRIERE 130 >gi|312195556|ref|YP_004015617.1| Fmu (Sun) domain protein [Frankia sp. EuI1c] gi|311226892|gb|ADP79747.1| Fmu (Sun) domain protein [Frankia sp. EuI1c] Length = 486 Score = 58.2 bits (140), Expect = 4e-07, Method: Composition-based stats. Identities = 29/174 (16%), Positives = 59/174 (33%), Gaps = 20/174 (11%) Query: 1 MTIQDNKKDLK-----LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTEL 55 MT + + R AR+ A ++ + E Y L Sbjct: 1 MTSPTGRPRPSAGGGSPAARVDDARMLA------WEV-----LRAVDERGAYANLLLPSL 49 Query: 56 DVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLEL 115 + D + + +G + + +D L+ + + + +D L LR G +L Sbjct: 50 LAQRRLTGRDRGFATELTYGALRAQGLLDGLLDTVTSR--PVATVDPGLRDALRLGTYQL 107 Query: 116 IECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRSGCVSAIT 169 + VP + V + +F NAVL +V+ + + G ++ + Sbjct: 108 L-RTRVPARAAVGTTVDLVRATAGERPVRFANAVLRRVADRV-AETGGDIATML 159 >gi|290581015|ref|YP_003485407.1| putative RNA-binding Sun protein [Streptococcus mutans NN2025] gi|254997914|dbj|BAH88515.1| putative RNA-binding Sun protein [Streptococcus mutans NN2025] Length = 440 Score = 58.2 bits (140), Expect = 4e-07, Method: Composition-based stats. Identities = 18/97 (18%), Positives = 43/97 (44%), Gaps = 4/97 (4%) Query: 62 LHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSV 121 D +++G + RK ++ ++ + ++ + +L + +++ + Sbjct: 43 SQADRSLLTELVYGTLTRKITLEWYLAHYIEDRNKLE---TWIYYLLMLSLYQILYLDKI 99 Query: 122 PVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEE 158 P I++E V +A G E K +NAVL + R++ Sbjct: 100 PQHAIVNEAVDLAKSRNRGAE-KLVNAVLRQFLRQKR 135 >gi|323127837|gb|ADX25134.1| Putative RNA-binding Sun protein [Streptococcus dysgalactiae subsp. equisimilis ATCC 12394] Length = 440 Score = 58.2 bits (140), Expect = 4e-07, Method: Composition-based stats. Identities = 24/113 (21%), Positives = 48/113 (42%), Gaps = 4/113 (3%) Query: 39 EIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFS 98 E I + Y A + D I++G + RK ++ ++ + ++ Sbjct: 18 EHIFDQGAYTNIALNQQLSNKALSTKDRALLTEIVYGTVSRKISLEWYLAHYVKDR---D 74 Query: 99 RLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEP-KFINAVL 150 +LD + +L + +LI +P I+++ V IA + KF+NA+L Sbjct: 75 KLDKWVYYLLMLSLYQLIYLDKLPAHAIVNDAVGIAKNRGNKKGAEKFVNAIL 127 >gi|221194743|ref|ZP_03567800.1| NusB/NOL1/NOP2/sun family protein [Atopobium rimae ATCC 49626] gi|221185647|gb|EEE18037.1| NusB/NOL1/NOP2/sun family protein [Atopobium rimae ATCC 49626] Length = 480 Score = 58.2 bits (140), Expect = 4e-07, Method: Composition-based stats. Identities = 19/96 (19%), Positives = 37/96 (38%), Gaps = 5/96 (5%) Query: 59 SVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIEC 118 V D ++ G + +D +++S L ++ L LR E++ Sbjct: 36 DVLGEKDRALATRLLLGSVSAVGELDRVLASYLPKRRHLE---PKLRDALRLATFEILYL 92 Query: 119 HSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVS 154 H P V +S+ V +A NA+L +++ Sbjct: 93 H-TPKHVAVSQGVEMARR-ASAQATGLANAILRRIA 126 >gi|251783087|ref|YP_002997390.1| 16S rRNA m(5)C 967 methyltransferase [Streptococcus dysgalactiae subsp. equisimilis GGS_124] gi|242391717|dbj|BAH82176.1| 16S rRNA m(5)C 967 methyltransferase [Streptococcus dysgalactiae subsp. equisimilis GGS_124] Length = 452 Score = 58.2 bits (140), Expect = 4e-07, Method: Composition-based stats. Identities = 24/113 (21%), Positives = 48/113 (42%), Gaps = 4/113 (3%) Query: 39 EIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFS 98 E I + Y A + D I++G + RK ++ ++ + ++ Sbjct: 30 EHIFDQGAYTNIALNQQLSNKALSTKDRALLTEIVYGTVSRKISLEWYLAHYVKDR---D 86 Query: 99 RLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEP-KFINAVL 150 +LD + +L + +LI +P I+++ V IA + KF+NA+L Sbjct: 87 KLDKWVYYLLMLSLYQLIYLDKLPAHAIVNDAVGIAKNRGNKKGAEKFVNAIL 139 >gi|300854445|ref|YP_003779429.1| putative rRNA subunit cytosine-methyltransferase [Clostridium ljungdahlii DSM 13528] gi|300434560|gb|ADK14327.1| predicted rRNA subunit cytosine-methyltransferase [Clostridium ljungdahlii DSM 13528] Length = 443 Score = 58.2 bits (140), Expect = 4e-07, Method: Composition-based stats. Identities = 24/140 (17%), Positives = 56/140 (40%), Gaps = 14/140 (10%) Query: 19 ARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMD 78 AR AV+ L ++ + ++++ Y + D I++G + Sbjct: 4 ARSTAVEILNEVLGSNAYSNKVLNTYLNK-----------NNLNKKDKALVTEIVYGTLK 52 Query: 79 RKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFF 138 ID ++ + S ++++ + +ILR + +L +P +++E V ++ Sbjct: 53 YMYTIDTILDDFIKS--SLKKMNIDIVNILRISIYQLRYLDKIPEFAVVNEAVELSKKKS 110 Query: 139 YGDEPKFINAVLDKVSRKEE 158 G +N VL R ++ Sbjct: 111 KGLSKL-VNGVLRNYLRNKD 129 >gi|75762655|ref|ZP_00742497.1| 16S rRNA m(5)C 967 methyltransferase [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|74489854|gb|EAO53228.1| 16S rRNA m(5)C 967 methyltransferase [Bacillus thuringiensis serovar israelensis ATCC 35646] Length = 368 Score = 58.2 bits (140), Expect = 4e-07, Method: Composition-based stats. Identities = 14/49 (28%), Positives = 21/49 (42%) Query: 108 LRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRK 156 LR + ++I VP I E V IA + +N VL + R+ Sbjct: 2 LRLSLYQMIYLDRVPERAAIHEAVEIAKRRGHKGIAGMVNGVLRSIQRE 50 >gi|302803795|ref|XP_002983650.1| hypothetical protein SELMODRAFT_47118 [Selaginella moellendorffii] gi|300148487|gb|EFJ15146.1| hypothetical protein SELMODRAFT_47118 [Selaginella moellendorffii] Length = 196 Score = 58.2 bits (140), Expect = 4e-07, Method: Composition-based stats. Identities = 26/184 (14%), Positives = 51/184 (27%), Gaps = 46/184 (25%) Query: 17 GIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTE---------------------- 54 AR ++ LY + G E++ + R E Sbjct: 12 RAARELSLCVLYAGLVSGSDPLEVLEDRMQARRERVDEKVLHQYDHDAKSGEPLYVSSES 71 Query: 55 -----LDVESVYLHVDLEWF-----------------RVIIHGVMDRKQHIDLLISSCLT 92 + +D II + ++ + ++ L Sbjct: 72 EAKELEFQQEQQSEIDAALLTAHPYVVYNKFVLRYGKEKIIKATSEGREKQEAVVKELLP 131 Query: 93 EKWSFSRLDMI-LCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLD 151 W + +I+ + E+ E ++I+E V +A F G P+ +N L Sbjct: 132 STWKDEGNGKLLETTIMHMAIAEI-EVLGTSPNIVINEAVELAKRFCDGFAPRVVNGCLG 190 Query: 152 KVSR 155 R Sbjct: 191 NYFR 194 >gi|325913038|ref|ZP_08175411.1| ribosomal RNA small subunit methyltransferase B [Lactobacillus iners UPII 60-B] gi|325477718|gb|EGC80857.1| ribosomal RNA small subunit methyltransferase B [Lactobacillus iners UPII 60-B] Length = 437 Score = 58.2 bits (140), Expect = 4e-07, Method: Composition-based stats. Identities = 26/149 (17%), Positives = 51/149 (34%), Gaps = 29/149 (19%) Query: 19 ARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMD 78 AR A+ L +I + ++Y A +S +D I++G + Sbjct: 5 ARSVALDTL----------LKIFKQ-KSYSNIALNNALEKSQLSPIDKALTTQIVYGTVQ 53 Query: 79 RKQHID----LLISSCLTEK--WSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVC 132 K +++ L+ + L E W L + +P I+ E Sbjct: 54 YKLYLEYQLKSLVQTKLKEDYLWPL----------LLMSAYQYFFLDKIPTASIVDEANK 103 Query: 133 IAHDFF--YGDEPKFINAVLDKVSRKEEI 159 +A + + +N +L + R+ EI Sbjct: 104 LAKSYSPKGSQSYRLVNGILRSLVRRGEI 132 >gi|259501638|ref|ZP_05744540.1| RNA methyltransferase Sun [Lactobacillus iners DSM 13335] gi|302191155|ref|ZP_07267409.1| SUN protein [Lactobacillus iners AB-1] gi|312874589|ref|ZP_07734613.1| ribosomal RNA small subunit methyltransferase B [Lactobacillus iners LEAF 2053A-b] gi|325911750|ref|ZP_08174157.1| ribosomal RNA small subunit methyltransferase B [Lactobacillus iners UPII 143-D] gi|259166923|gb|EEW51418.1| RNA methyltransferase Sun [Lactobacillus iners DSM 13335] gi|311089819|gb|EFQ48239.1| ribosomal RNA small subunit methyltransferase B [Lactobacillus iners LEAF 2053A-b] gi|325476516|gb|EGC79675.1| ribosomal RNA small subunit methyltransferase B [Lactobacillus iners UPII 143-D] Length = 437 Score = 58.2 bits (140), Expect = 4e-07, Method: Composition-based stats. Identities = 26/149 (17%), Positives = 51/149 (34%), Gaps = 29/149 (19%) Query: 19 ARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMD 78 AR A+ L +I + ++Y A +S +D I++G + Sbjct: 5 ARSVALDTL----------LKIFKQ-KSYSNIALNNALEKSQLSPIDKALTTQIVYGTVQ 53 Query: 79 RKQHID----LLISSCLTEK--WSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVC 132 K +++ L+ + L E W L + +P I+ E Sbjct: 54 YKLYLEYQLKSLVQTKLKEDYLWPL----------LLMSAYQYFFLDKIPTASIVDEANK 103 Query: 133 IAHDFF--YGDEPKFINAVLDKVSRKEEI 159 +A + + +N +L + R+ EI Sbjct: 104 LAKSYSPKGSQSYRLVNGILRSLVRRGEI 132 >gi|329667064|gb|AEB93012.1| RNA methylase [Lactobacillus johnsonii DPC 6026] Length = 434 Score = 58.2 bits (140), Expect = 4e-07, Method: Composition-based stats. Identities = 26/145 (17%), Positives = 50/145 (34%), Gaps = 17/145 (11%) Query: 17 GIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGV 76 AR A++ L ++ ++ + EL ++ D I++G Sbjct: 2 SNARTVALETL----------IKVFNQKSYSNIALNNEL-IKHDLKPADKALATRIVYGT 50 Query: 77 MDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHD 136 + K ++ + + K D L +L + VP I E +A Sbjct: 51 IQYKIFLEYQLKPLIKTKLR----DSFLKPLLLMSAYQYFFLEKVPANAIFDEANKLAKK 106 Query: 137 FFYGD--EPKFINAVLDKVSRKEEI 159 + + K IN +L + R+ EI Sbjct: 107 YSKRNSGSYKLINGILRALERQGEI 131 >gi|42519411|ref|NP_965341.1| SUN protein [Lactobacillus johnsonii NCC 533] gi|41583699|gb|AAS09307.1| SUN protein [Lactobacillus johnsonii NCC 533] Length = 438 Score = 58.2 bits (140), Expect = 4e-07, Method: Composition-based stats. Identities = 26/145 (17%), Positives = 50/145 (34%), Gaps = 17/145 (11%) Query: 17 GIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGV 76 AR A++ L ++ ++ + EL ++ D I++G Sbjct: 2 SNARTVALETL----------IKVFNQKSYSNIALNNEL-IKHDLKPADKALATRIVYGT 50 Query: 77 MDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHD 136 + K ++ + + K D L +L + VP I E +A Sbjct: 51 IQYKIFLEYQLKPLIKTKLR----DSFLKPLLLMSAYQYFFLEKVPANAIFDEANKLAKK 106 Query: 137 FFYGD--EPKFINAVLDKVSRKEEI 159 + + K IN +L + R+ EI Sbjct: 107 YSKRNSGSYKLINGILRALERQGEI 131 >gi|312871585|ref|ZP_07731677.1| ribosomal RNA small subunit methyltransferase B [Lactobacillus iners LEAF 3008A-a] gi|311092810|gb|EFQ51162.1| ribosomal RNA small subunit methyltransferase B [Lactobacillus iners LEAF 3008A-a] Length = 437 Score = 58.2 bits (140), Expect = 4e-07, Method: Composition-based stats. Identities = 26/149 (17%), Positives = 51/149 (34%), Gaps = 29/149 (19%) Query: 19 ARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMD 78 AR A+ L +I + ++Y A +S +D I++G + Sbjct: 5 ARSVALDTL----------LKIFKQ-KSYSNIALNNALEKSQLSPIDKALTTQIVYGTVQ 53 Query: 79 RKQHID----LLISSCLTEK--WSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVC 132 K +++ L+ + L E W L + +P I+ E Sbjct: 54 YKLYLEYQLKSLVKTKLKEDYLWPL----------LLMSAYQYFFLDKIPTASIVDEANK 103 Query: 133 IAHDFF--YGDEPKFINAVLDKVSRKEEI 159 +A + + +N +L + R+ EI Sbjct: 104 LAKSYSPKGSQSYRLVNGILRSLVRRGEI 132 >gi|329921088|ref|ZP_08277611.1| ribosomal RNA small subunit methyltransferase B [Lactobacillus iners SPIN 1401G] gi|328934995|gb|EGG31484.1| ribosomal RNA small subunit methyltransferase B [Lactobacillus iners SPIN 1401G] Length = 437 Score = 57.8 bits (139), Expect = 5e-07, Method: Composition-based stats. Identities = 26/149 (17%), Positives = 51/149 (34%), Gaps = 29/149 (19%) Query: 19 ARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMD 78 AR A+ L +I + ++Y A +S +D I++G + Sbjct: 5 ARSVALDTL----------LKIFKQ-KSYSNIALNNALEKSQLSPIDKALTTQIVYGTVQ 53 Query: 79 RKQHID----LLISSCLTEK--WSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVC 132 K +++ L+ + L E W L + +P I+ E Sbjct: 54 YKLYLEYQLKSLVKTKLKEDYLWPL----------LLMSAYQYFFLDKIPTASIVDEANK 103 Query: 133 IAHDFF--YGDEPKFINAVLDKVSRKEEI 159 +A + + +N +L + R+ EI Sbjct: 104 LAKSYSPKGSQSYRLVNGILRSLVRRGEI 132 >gi|206901447|ref|YP_002251151.1| ribosomal RNA small subunit methyltransferase B [Dictyoglomus thermophilum H-6-12] gi|206740550|gb|ACI19608.1| ribosomal RNA small subunit methyltransferase B [Dictyoglomus thermophilum H-6-12] Length = 430 Score = 57.8 bits (139), Expect = 5e-07, Method: Composition-based stats. Identities = 24/139 (17%), Positives = 48/139 (34%), Gaps = 16/139 (11%) Query: 20 RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79 RL A + LY ++ ++ + E + +++GV Sbjct: 4 RLKAAEILYDLEKREAYLNLLLRSRLPSYNLSLKE-----------KHFITELVYGVTRW 52 Query: 80 KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139 K +D + S + L + +LR + + + ++E V IA Sbjct: 53 KTTLDYIWSRFVKR----DNLSLFGRILLRLVAYHIYFLKDTILPIAVNEIVEIAKR-KV 107 Query: 140 GDEPKFINAVLDKVSRKEE 158 E K INAV ++ ++ Sbjct: 108 PKEAKLINAVSRRMVKERN 126 >gi|312871906|ref|ZP_07731988.1| ribosomal RNA small subunit methyltransferase B [Lactobacillus iners LEAF 2062A-h1] gi|312873262|ref|ZP_07733318.1| ribosomal RNA small subunit methyltransferase B [Lactobacillus iners LEAF 2052A-d] gi|311091273|gb|EFQ49661.1| ribosomal RNA small subunit methyltransferase B [Lactobacillus iners LEAF 2052A-d] gi|311092483|gb|EFQ50845.1| ribosomal RNA small subunit methyltransferase B [Lactobacillus iners LEAF 2062A-h1] Length = 437 Score = 57.8 bits (139), Expect = 5e-07, Method: Composition-based stats. Identities = 26/149 (17%), Positives = 51/149 (34%), Gaps = 29/149 (19%) Query: 19 ARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMD 78 AR A+ L +I + ++Y A +S +D I++G + Sbjct: 5 ARSVALDTL----------LKIFKQ-KSYSNIALNNALEKSQLSPIDKALTTQIVYGTVQ 53 Query: 79 RKQHID----LLISSCLTEK--WSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVC 132 K +++ L+ + L E W L + +P I+ E Sbjct: 54 YKLYLEYQLKSLVKTKLKEDYLWPL----------LLMSAYQYFFLDKIPTASIVDEANK 103 Query: 133 IAHDFF--YGDEPKFINAVLDKVSRKEEI 159 +A + + +N +L + R+ EI Sbjct: 104 LAKSYSPKGSQSYRLVNGILRSLVRRGEI 132 >gi|257063705|ref|YP_003143377.1| tRNA/rRNA cytosine-C5-methylase [Slackia heliotrinireducens DSM 20476] gi|256791358|gb|ACV22028.1| tRNA/rRNA cytosine-C5-methylase [Slackia heliotrinireducens DSM 20476] Length = 531 Score = 57.8 bits (139), Expect = 5e-07, Method: Composition-based stats. Identities = 19/97 (19%), Positives = 36/97 (37%), Gaps = 5/97 (5%) Query: 59 SVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIEC 118 D+ + + GV+ +D I+ L +S + + + LR EL+ Sbjct: 126 GPMKPEDVAFATRLARGVVATSGALDDFINRNL---YSPADIQPNVRDALRVSAYELLYL 182 Query: 119 HSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSR 155 V + + V + + NAVL K++R Sbjct: 183 KKDDY-VAVDQGVELV-AYVEPKARALANAVLRKMAR 217 >gi|309803103|ref|ZP_07697200.1| ribosomal RNA small subunit methyltransferase B [Lactobacillus iners LactinV 11V1-d] gi|315653701|ref|ZP_07906621.1| RNA methyltransferase Sun [Lactobacillus iners ATCC 55195] gi|308164611|gb|EFO66861.1| ribosomal RNA small subunit methyltransferase B [Lactobacillus iners LactinV 11V1-d] gi|315489063|gb|EFU78705.1| RNA methyltransferase Sun [Lactobacillus iners ATCC 55195] Length = 437 Score = 57.8 bits (139), Expect = 5e-07, Method: Composition-based stats. Identities = 26/149 (17%), Positives = 51/149 (34%), Gaps = 29/149 (19%) Query: 19 ARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMD 78 AR A+ L +I + ++Y A +S +D I++G + Sbjct: 5 ARSVALDTL----------LKIFKQ-KSYSNIALNNALEKSQLSPIDKALTTQIVYGTVQ 53 Query: 79 RKQHID----LLISSCLTEK--WSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVC 132 K +++ L+ + L E W L + +P I+ E Sbjct: 54 YKLYLEYQLKSLVQTKLKEDYLWPL----------LLMSAYQYFFLDKIPTASIVDEANK 103 Query: 133 IAHDFF--YGDEPKFINAVLDKVSRKEEI 159 +A + + +N +L + R+ EI Sbjct: 104 LAKSYSPKGSQSYRLVNGILRSLVRRGEI 132 >gi|298256363|gb|ADI71472.1| putative tRNA/rRNA cytosine-C5-methylase [Amycolatopsis orientalis subsp. vinearia] Length = 474 Score = 57.8 bits (139), Expect = 5e-07, Method: Composition-based stats. Identities = 34/162 (20%), Positives = 54/162 (33%), Gaps = 19/162 (11%) Query: 3 IQDNKKDLKLSHRRGI-----ARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDV 57 Q + + R AR AA L + + Y +L Sbjct: 12 PQRGRPAPRKEGPRRPPSVDPARQAAFDVL-----------AAVRTKDAYANLVLPDLLR 60 Query: 58 ESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIE 117 E D + +G + +D +I SC S+ D + LR GV +L+ Sbjct: 61 ERRITGRDAALATELAYGASRAQGLLDAVIESCAER--PLSQTDPAVLDALRLGVYQLL- 117 Query: 118 CHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEI 159 +P ++ V + F NAV+ KVS K+E Sbjct: 118 RTRIPGHAAVTSTVDLVRAEGGSWATGFANAVMRKVSEKDEA 159 >gi|325963042|ref|YP_004240948.1| ribosomal RNA small subunit methyltransferase RsmB [Arthrobacter phenanthrenivorans Sphe3] gi|323469129|gb|ADX72814.1| ribosomal RNA small subunit methyltransferase RsmB [Arthrobacter phenanthrenivorans Sphe3] Length = 533 Score = 57.8 bits (139), Expect = 5e-07, Method: Composition-based stats. Identities = 32/146 (21%), Positives = 53/146 (36%), Gaps = 17/146 (11%) Query: 12 LSHR-RGI--ARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEW 68 S R R ARL A + L + + + LD D + Sbjct: 63 PSQRTRRADPARLVAFEVL-----RAVAAEDAYANLVLPARIRHHGLD------KRDAGF 111 Query: 69 FRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIIS 128 + +G + + D +++ C+ +LD + LR GV +L+ VP + Sbjct: 112 ATELTYGALRGQGTYDAILARCVDR--PLDQLDPAVLDALRIGVHQLLAMR-VPAHAALD 168 Query: 129 EYVCIAHDFFYGDEPKFINAVLDKVS 154 + V +A INAVL KV+ Sbjct: 169 QTVGLARAVIGAGPSALINAVLRKVA 194 >gi|161507728|ref|YP_001577689.1| rRNA methylase [Lactobacillus helveticus DPC 4571] gi|260101420|ref|ZP_05751657.1| RNA methyltransferase Sun [Lactobacillus helveticus DSM 20075] gi|160348717|gb|ABX27391.1| rRNA methylase [Lactobacillus helveticus DPC 4571] gi|260084760|gb|EEW68880.1| RNA methyltransferase Sun [Lactobacillus helveticus DSM 20075] Length = 454 Score = 57.8 bits (139), Expect = 5e-07, Method: Composition-based stats. Identities = 16/95 (16%), Positives = 37/95 (38%), Gaps = 6/95 (6%) Query: 64 VDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPV 123 D I++G + + ++ ++ L K + + L +L + ++I VP Sbjct: 53 ADQNLATRIVYGTIQYRLFLEYQLTGLLKTKIT----EKYLKPLLLMSLYQIIFLDKVPN 108 Query: 124 EVIISEYVCIAHDFFYGDEPKF--INAVLDKVSRK 156 ++ E +A F + +N +L R+ Sbjct: 109 RAVLDEANKLAKQFGKHHSSGYRVVNGILRAFIRR 143 >gi|229815471|ref|ZP_04445803.1| hypothetical protein COLINT_02519 [Collinsella intestinalis DSM 13280] gi|229809004|gb|EEP44774.1| hypothetical protein COLINT_02519 [Collinsella intestinalis DSM 13280] Length = 478 Score = 57.8 bits (139), Expect = 6e-07, Method: Composition-based stats. Identities = 34/147 (23%), Positives = 59/147 (40%), Gaps = 20/147 (13%) Query: 10 LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDV--ESVYLHVDLE 67 L + + RL A++ L I+ E+ R+ + D + D Sbjct: 8 LSKTAKLSPGRLVALRIL-------------IAARESGRYARELAADACASASLDSRDAA 54 Query: 68 WFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVII 127 + R + GV +D ++S L + S L + LR G EL+ + P +V + Sbjct: 55 FARRLALGVTGCSGCLDDALNSVLDDPRS---LTADVRDALRIGAYELLYLGTSP-QVAV 110 Query: 128 SEYVCIAHDFFYGDEPKFINAVLDKVS 154 S+ V +A +G NAVL +V+ Sbjct: 111 SQAVELARMCAHG-AAGLANAVLRRVA 136 >gi|325685886|gb|EGD27952.1| RNA methyltransferase Sun [Lactobacillus delbrueckii subsp. lactis DSM 20072] Length = 438 Score = 57.4 bits (138), Expect = 6e-07, Method: Composition-based stats. Identities = 18/147 (12%), Positives = 53/147 (36%), Gaps = 19/147 (12%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 + AR A+ L ++I++ +Y + + + +++G Sbjct: 2 KTNARTVALDTL----------MKVINQ-GSYSNISLNHALKAAKLPGEESRLATNLVYG 50 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRL-DMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134 + + +++ + + RL + + +L ++ VP ++ E +A Sbjct: 51 TIQYQLYLEYQLKDLVKA-----RLREPYIKPLLLMSAYQIFFLDKVPNRAVLDEANKLA 105 Query: 135 HDFFYGDEPKF--INAVLDKVSRKEEI 159 + + +N +L + R+ E+ Sbjct: 106 KAYGRPKSSGYRLVNGILHSLLRRGEV 132 >gi|309807733|ref|ZP_07701667.1| rRNA methyltransferase RsmB family protein [Lactobacillus iners LactinV 01V1-a] gi|308168993|gb|EFO71077.1| rRNA methyltransferase RsmB family protein [Lactobacillus iners LactinV 01V1-a] Length = 160 Score = 57.4 bits (138), Expect = 6e-07, Method: Composition-based stats. Identities = 19/111 (17%), Positives = 39/111 (35%), Gaps = 18/111 (16%) Query: 57 VESVYLHVDLEWFRVIIHGVMDRKQHID----LLISSCLTEK--WSFSRLDMILCSILRA 110 +S +D I++G + K +++ L+ + L E W L Sbjct: 2 EKSQLSPIDKALTTQIVYGTVQYKLYLEYQLKSLVKTKLKEDYLWPL----------LLM 51 Query: 111 GVLELIECHSVPVEVIISEYVCIAHDFF--YGDEPKFINAVLDKVSRKEEI 159 + +P I+ E +A + + +N +L + R+ EI Sbjct: 52 SAYQYFFLDKIPTASIVDEANKLAKSYSPKGSQSYRLVNGILRSLVRRGEI 102 >gi|239618307|ref|YP_002941629.1| NusB/RsmB/TIM44 [Kosmotoga olearia TBF 19.5.1] gi|239507138|gb|ACR80625.1| NusB/RsmB/TIM44 [Kosmotoga olearia TBF 19.5.1] Length = 336 Score = 57.4 bits (138), Expect = 6e-07, Method: Composition-based stats. Identities = 26/126 (20%), Positives = 55/126 (43%), Gaps = 11/126 (8%) Query: 35 CSTTEIISEYETYRFCADTELDVE-SVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTE 93 E ++ ++ + ++++ S + ++ ++ + ++ ID +++ L + Sbjct: 6 QKALETLAFFDQNGYIPFRKVEIAISTLSSIGRRFYMNLVMETLRKRIQIDYILNQFLKK 65 Query: 94 KWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCI--AHDFFYGDEPKFINAVLD 151 +L + + LR GV +L SVP I V + A F K +NAVL Sbjct: 66 ---PEKLPAPVMNALRLGVTQLFYMDSVPEFAAIHSSVELLKAKSF-----KKLVNAVLR 117 Query: 152 KVSRKE 157 K+S+ E Sbjct: 118 KISKLE 123 >gi|297559831|ref|YP_003678805.1| Fmu (Sun) domain protein [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] gi|296844279|gb|ADH66299.1| Fmu (Sun) domain protein [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] Length = 489 Score = 57.4 bits (138), Expect = 6e-07, Method: Composition-based stats. Identities = 30/145 (20%), Positives = 54/145 (37%), Gaps = 14/145 (9%) Query: 13 SHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVI 72 S R AR A L + + + Y L E D + Sbjct: 30 SPPRDPARRVAYDVL-----------RAVGQRDAYANLLLPALLSERGISGRDAALATEL 78 Query: 73 IHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVC 132 +G + + D ++ +C+ + + +D +LR G +L+ +P +S V Sbjct: 79 TYGTLRLQGTYDAILEACVDR--TLASVDTEALPLLRLGAHQLL-STKIPPHAAVSATVD 135 Query: 133 IAHDFFYGDEPKFINAVLDKVSRKE 157 +A +F+NAVL KVS ++ Sbjct: 136 LARRVVGHHRGRFVNAVLRKVSARD 160 >gi|300361951|ref|ZP_07058128.1| ribosomal RNA small subunit methyltransferase B [Lactobacillus gasseri JV-V03] gi|300354570|gb|EFJ70441.1| ribosomal RNA small subunit methyltransferase B [Lactobacillus gasseri JV-V03] Length = 438 Score = 57.4 bits (138), Expect = 6e-07, Method: Composition-based stats. Identities = 26/148 (17%), Positives = 51/148 (34%), Gaps = 17/148 (11%) Query: 17 GIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGV 76 AR A++ L ++ ++ + EL V+ D I++G Sbjct: 2 SNARTVALETL----------IKVFNQKSYSNIALNNEL-VKHELKPADKALATRIVYGT 50 Query: 77 MDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHD 136 + K ++ + + K D L +L + VP I E +A Sbjct: 51 IQYKIFLEYQLKPLIKTKLR----DKFLMPLLLMSAYQYFFLEKVPANAIFDEANKLAKK 106 Query: 137 FFYGD--EPKFINAVLDKVSRKEEIKRS 162 F + K +N +L + R+ ++ S Sbjct: 107 FSKKNSGSYKLVNGILRALERQGKVLPS 134 >gi|206891137|ref|YP_002248173.1| Sun protein [Thermodesulfovibrio yellowstonii DSM 11347] gi|206743075|gb|ACI22132.1| Sun protein [Thermodesulfovibrio yellowstonii DSM 11347] Length = 441 Score = 57.4 bits (138), Expect = 7e-07, Method: Composition-based stats. Identities = 24/103 (23%), Positives = 45/103 (43%), Gaps = 6/103 (5%) Query: 59 SVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIEC 118 S++ D + +I+GV+ +ID L+ + +L M + LR + +L+ Sbjct: 34 SMFDKADRAFLLEVIYGVLRNLYYIDWLLEDFYKSR---EKLSMYTINNLRCAIYQLVFM 90 Query: 119 HSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKR 161 H +P + +E V + F P +NA+L RK + Sbjct: 91 H-IPAYAVANETVNVEKSFNGK--PNVVNAILRNFLRKYQADE 130 >gi|134098684|ref|YP_001104345.1| ribosomal RNA small subunit methyltransferase [Saccharopolyspora erythraea NRRL 2338] gi|133911307|emb|CAM01420.1| ribosomal RNA small subunit methyltransferase [Saccharopolyspora erythraea NRRL 2338] Length = 430 Score = 57.4 bits (138), Expect = 7e-07, Method: Composition-based stats. Identities = 24/119 (20%), Positives = 44/119 (36%), Gaps = 3/119 (2%) Query: 42 SEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLD 101 + + Y A L + D + +G + +D +I C +D Sbjct: 2 RDRDAYANLALPALLKQRRISGRDAALATELTYGACRAQGLLDAVIGECSAR--PLDGID 59 Query: 102 MILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIK 160 L LR G +L+ +P ++ V I + F NAVL ++S ++E + Sbjct: 60 PELLDALRLGAYQLL-RTRIPAHAAVASTVDIVRAESGSRQAGFANAVLRRISERDEQE 117 >gi|258654277|ref|YP_003203433.1| Fmu (Sun) domain-containing protein [Nakamurella multipartita DSM 44233] gi|258557502|gb|ACV80444.1| Fmu (Sun) domain protein [Nakamurella multipartita DSM 44233] Length = 494 Score = 57.4 bits (138), Expect = 7e-07, Method: Composition-based stats. Identities = 26/136 (19%), Positives = 48/136 (35%), Gaps = 14/136 (10%) Query: 19 ARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMD 78 AR AA+ L + Y A + + D + +G Sbjct: 41 ARQAALDLL-----------AAVRSRGAYANLALPPILRDRRIGGRDAALATELAYGSCR 89 Query: 79 RKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFF 138 +D +I++C F+ LD + LR G +L+ +P +S V + Sbjct: 90 ALGQLDAVITACGDR--PFAELDGEVIDALRLGAYQLLHTR-IPPHAAVSSTVELVRAGD 146 Query: 139 YGDEPKFINAVLDKVS 154 ++NAVL +++ Sbjct: 147 RAGAAGYVNAVLRRIA 162 >gi|312869942|ref|ZP_07730081.1| ribosomal RNA small subunit methyltransferase B [Lactobacillus oris PB013-T2-3] gi|311094527|gb|EFQ52832.1| ribosomal RNA small subunit methyltransferase B [Lactobacillus oris PB013-T2-3] Length = 449 Score = 57.4 bits (138), Expect = 7e-07, Method: Composition-based stats. Identities = 27/139 (19%), Positives = 49/139 (35%), Gaps = 15/139 (10%) Query: 18 IARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVM 77 AR A+ AL + I Y +L + D I++G + Sbjct: 8 TAREVALTAL-----------DRIRRQGAYSNLQLNQLLSKHHLNDSDRRLATRIVYGTL 56 Query: 78 DRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDF 137 + ++ + + K RLD + ++L + + VP + E + IA + Sbjct: 57 QHQLTLEYWLQPFVKGK----RLDSWVETLLLTALYQYHYLERVPDWAVTDETIEIAKHW 112 Query: 138 FYGDEPKFINAVLDKVSRK 156 KF+ VL V R+ Sbjct: 113 GNPGIRKFVTGVLHAVLRR 131 >gi|315038633|ref|YP_004032201.1| rRNA methylase [Lactobacillus amylovorus GRL 1112] gi|312276766|gb|ADQ59406.1| rRNA methylase [Lactobacillus amylovorus GRL 1112] gi|327183838|gb|AEA32285.1| 16S rRNA methyltransferase B [Lactobacillus amylovorus GRL 1118] Length = 442 Score = 57.4 bits (138), Expect = 7e-07, Method: Composition-based stats. Identities = 14/103 (13%), Positives = 35/103 (33%), Gaps = 12/103 (11%) Query: 59 SVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILC---SILRAGVLEL 115 S D I++G + + ++ + R+ + +L + ++ Sbjct: 36 SDLSQADQNLATKIVYGTIQYRLFLEYQLKG-------LVRIKLTEKYLKPLLLMSIYQI 88 Query: 116 IECHSVPVEVIISEYVCIAHDFFYGDEPKF--INAVLDKVSRK 156 + VP ++ E +A F + +N +L R+ Sbjct: 89 VFLDKVPNRAVLDEANKLAKQFGKHHSSGYRVVNGILRSFIRR 131 >gi|257464362|ref|ZP_05628739.1| 16S rRNA m(5)C 967 methyltransferase [Fusobacterium sp. D12] gi|317061867|ref|ZP_07926352.1| 16S rRNA m(5)C 967 methyltransferase [Fusobacterium sp. D12] gi|313687543|gb|EFS24378.1| 16S rRNA m(5)C 967 methyltransferase [Fusobacterium sp. D12] Length = 432 Score = 57.4 bits (138), Expect = 7e-07, Method: Composition-based stats. Identities = 24/118 (20%), Positives = 46/118 (38%), Gaps = 12/118 (10%) Query: 53 TELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTE---KWSFSRLDMILCSILR 109 EL + + + + + +GV+ K ++D +IS + E W L + R Sbjct: 25 NELFHKKSFQKGEKNFITEVFYGVIRNKIYLDHMISQKVKEIKKDW--------LQQLFR 76 Query: 110 AGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRSGCVSA 167 ++ S + +I E V +A + +F+NAVL R + + A Sbjct: 77 LSFYQIRFMES-DDKGVIWEGVELAKKKYGISVSRFVNAVLRNFQRSFSEEEEKLIKA 133 >gi|302335853|ref|YP_003801060.1| NusB/RsmB/TIM44 [Olsenella uli DSM 7084] gi|301319693|gb|ADK68180.1| NusB/RsmB/TIM44 [Olsenella uli DSM 7084] Length = 484 Score = 57.4 bits (138), Expect = 7e-07, Method: Composition-based stats. Identities = 24/115 (20%), Positives = 40/115 (34%), Gaps = 15/115 (13%) Query: 19 ARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMD 78 AR AV+ L + + E++ D S D ++ GV+ Sbjct: 17 ARRVAVRLLRDQRVRDGRSRELLR-----------SSDALSALDERDRALATRLVLGVVA 65 Query: 79 RKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCI 133 + +D I S L S L+ + LR EL+ P +S+ V + Sbjct: 66 SRGALDAAIDSHLRPH---SHLEPKVRDALRLASFELMY-LDTPPSAAVSQGVEL 116 >gi|295397805|ref|ZP_06807870.1| ribosomal RNA small subunit methyltransferase B [Aerococcus viridans ATCC 11563] gi|294973940|gb|EFG49702.1| ribosomal RNA small subunit methyltransferase B [Aerococcus viridans ATCC 11563] Length = 482 Score = 57.0 bits (137), Expect = 7e-07, Method: Composition-based stats. Identities = 29/152 (19%), Positives = 53/152 (34%), Gaps = 19/152 (12%) Query: 7 KKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDL 66 + LKLS R QA+ S +II + L E+V D Sbjct: 22 QTPLKLSAR--------FQAM-------ESVNQIIRHNHFINQEVNRVLTEEAV-AEADR 65 Query: 67 EWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVI 126 + +++G + +D + + + + S+L ++ ++P + Sbjct: 66 NLYTNLVYGSVQNYYTLDAFVRDFVAKPNKVK---SWVWSLLIVSAYQMYYLDNIPNYAV 122 Query: 127 ISEYVCIAHDFFYGDEPKFINAVLDKVSRKEE 158 + E V I KF N VL +R+ E Sbjct: 123 VDEAVRIVRKRGNQTLAKFANGVLRNFTRRYE 154 >gi|237745177|ref|ZP_04575658.1| 16S rRNA m(5)C 967 methyltransferase [Fusobacterium sp. 7_1] gi|229432406|gb|EEO42618.1| 16S rRNA m(5)C 967 methyltransferase [Fusobacterium sp. 7_1] Length = 435 Score = 57.0 bits (137), Expect = 8e-07, Method: Composition-based stats. Identities = 17/99 (17%), Positives = 40/99 (40%), Gaps = 12/99 (12%) Query: 65 DLEWFRVIIHGVMDRKQHIDLLISSC---LTEKWSFSRLDMILCSILRAGVLELIECHSV 121 + + I +GV+ K+ +D +I + ++W + ++LR + ++ Sbjct: 37 EKAFITEIFYGVIRNKKFLDYIIERYTKEIKKEW--------IRNLLRISIYQITFM-DS 87 Query: 122 PVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIK 160 + I+ E + + KFIN L R ++ + Sbjct: 88 DNKGIVWEATELTKKKYGMTISKFINGTLRNYLRNKDTE 126 >gi|256026704|ref|ZP_05440538.1| 16S rRNA m(5)C 967 methyltransferase [Fusobacterium sp. D11] gi|289764700|ref|ZP_06524078.1| 16S rRNA m(5)C 967 methyltransferase [Fusobacterium sp. D11] gi|289716255|gb|EFD80267.1| 16S rRNA m(5)C 967 methyltransferase [Fusobacterium sp. D11] Length = 435 Score = 57.0 bits (137), Expect = 8e-07, Method: Composition-based stats. Identities = 17/99 (17%), Positives = 40/99 (40%), Gaps = 12/99 (12%) Query: 65 DLEWFRVIIHGVMDRKQHIDLLISSC---LTEKWSFSRLDMILCSILRAGVLELIECHSV 121 + + I +GV+ K+ +D +I + ++W + ++LR + ++ Sbjct: 37 EKAFITEIFYGVIRNKKFLDYIIERYTKEIKKEW--------IRNLLRISIYQITFM-DS 87 Query: 122 PVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIK 160 + I+ E + + KFIN L R ++ + Sbjct: 88 DNKGIVWEATELTKKKYGMTISKFINGTLRNYLRNKDTE 126 >gi|299783408|gb|ADJ41406.1| Ribosomal RNA small subunit methyltransferase B [Lactobacillus fermentum CECT 5716] Length = 448 Score = 57.0 bits (137), Expect = 8e-07, Method: Composition-based stats. Identities = 19/133 (14%), Positives = 44/133 (33%), Gaps = 9/133 (6%) Query: 29 QIDIIGC-----STTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHI 83 Q + G +T + + Y + D +++G + ++ + Sbjct: 5 QAQLTGARAIALATLDKVRTSGAYSNLQLNQALESGQLSGADRRLVTALVYGTLQHQRTL 64 Query: 84 DLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEP 143 D +S + K ++ + ++L + + VP E + IA Sbjct: 65 DYWLSPFIAGK----KVRPWVKTLLLMTLFQYQYLDRVPNFAATDEAIEIAKRRGNPGVR 120 Query: 144 KFINAVLDKVSRK 156 +F+ VL + R Sbjct: 121 RFVTGVLHAILRN 133 >gi|227515682|ref|ZP_03945731.1| rRNA SAM-dependent methyltransferase RmsB [Lactobacillus fermentum ATCC 14931] gi|227085930|gb|EEI21242.1| rRNA SAM-dependent methyltransferase RmsB [Lactobacillus fermentum ATCC 14931] Length = 448 Score = 57.0 bits (137), Expect = 8e-07, Method: Composition-based stats. Identities = 19/133 (14%), Positives = 44/133 (33%), Gaps = 9/133 (6%) Query: 29 QIDIIGC-----STTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHI 83 Q + G +T + + Y + D +++G + ++ + Sbjct: 5 QAQLTGARAIALATLDKVRTSGAYSNLQLNQALESGQLSGADRRLVTALVYGTLQHQRTL 64 Query: 84 DLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEP 143 D +S + K ++ + ++L + + VP E + IA Sbjct: 65 DYWLSPFIAGK----KVRPWVKTLLLMTLFQYQYLDRVPNFAATDEAIEIAKRRGNPGVR 120 Query: 144 KFINAVLDKVSRK 156 +F+ VL + R Sbjct: 121 RFVTGVLHAILRN 133 >gi|227878882|ref|ZP_03996787.1| rRNA SAM-dependent methyltransferase RmsB [Lactobacillus crispatus JV-V01] gi|227861516|gb|EEJ69130.1| rRNA SAM-dependent methyltransferase RmsB [Lactobacillus crispatus JV-V01] Length = 427 Score = 57.0 bits (137), Expect = 9e-07, Method: Composition-based stats. Identities = 19/99 (19%), Positives = 39/99 (39%), Gaps = 14/99 (14%) Query: 64 VDLEWFRVIIHGVMDRKQ----HIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECH 119 D I++G + + + L+ + LTEK+ + +L + +LI Sbjct: 27 ADQNLATNIVYGTIQYRLFLEYQLKGLVRTKLTEKY--------IKPLLLMSLYQLIFLD 78 Query: 120 SVPVEVIISEYVCIAHDFFYGDEPKF--INAVLDKVSRK 156 VP ++ E +A + F +N +L +R+ Sbjct: 79 KVPDRAVLDEANKLAKQYGKRHSAGFRLVNGILRSFTRR 117 >gi|227542164|ref|ZP_03972213.1| 16S rRNA M(5)C 967 methyltransferase [Corynebacterium glucuronolyticum ATCC 51866] gi|227181993|gb|EEI62965.1| 16S rRNA M(5)C 967 methyltransferase [Corynebacterium glucuronolyticum ATCC 51866] Length = 620 Score = 57.0 bits (137), Expect = 9e-07, Method: Composition-based stats. Identities = 27/118 (22%), Positives = 46/118 (38%), Gaps = 13/118 (11%) Query: 58 ESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIE 117 E+ D + I +G M +D +I SC + S LD I+ + LR G+ +L+ Sbjct: 168 EAGLSGRDAAFATEIGYGTMRMVGVLDEIIGSCSSR--PMSELDPIVLNALRMGIYQLLY 225 Query: 118 CHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRK------EEIKRSGCVSAIT 169 V + F+NA+L V +K EE+ G ++ + Sbjct: 226 TRVEDHA-----AVDTSVRLVPQRVKGFVNAILRAVQKKPLEQWIEELAPEGKLAQLA 278 >gi|227488841|ref|ZP_03919157.1| possible rRNA SAM-dependent methyltransferase RmsB [Corynebacterium glucuronolyticum ATCC 51867] gi|227091263|gb|EEI26575.1| possible rRNA SAM-dependent methyltransferase RmsB [Corynebacterium glucuronolyticum ATCC 51867] Length = 470 Score = 57.0 bits (137), Expect = 9e-07, Method: Composition-based stats. Identities = 27/118 (22%), Positives = 46/118 (38%), Gaps = 13/118 (11%) Query: 58 ESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIE 117 E+ D + I +G M +D +I SC + S LD I+ + LR G+ +L+ Sbjct: 18 EAGLSGRDAAFATEIGYGTMRMVGVLDEIIGSCSSR--PMSELDPIVLNALRMGIYQLLY 75 Query: 118 CHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRK------EEIKRSGCVSAIT 169 V + F+NA+L V +K EE+ G ++ + Sbjct: 76 TRVEDHA-----AVDTSVRLVPQRVKGFVNAILRAVQKKPLEQWIEELAPEGKLAQLA 128 >gi|332702662|ref|ZP_08422750.1| Fmu (Sun) domain protein [Desulfovibrio africanus str. Walvis Bay] gi|332552811|gb|EGJ49855.1| Fmu (Sun) domain protein [Desulfovibrio africanus str. Walvis Bay] Length = 433 Score = 57.0 bits (137), Expect = 9e-07, Method: Composition-based stats. Identities = 29/137 (21%), Positives = 44/137 (32%), Gaps = 14/137 (10%) Query: 19 ARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMD 78 AR AA++A+ + + T R A D+ + +G + Sbjct: 9 ARRAALEAVSKSLNTSTDVQAALDTQITARRLA-----------PRDIGLATELTYGYLR 57 Query: 79 RKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFF 138 K +D L+ L +L + IL EL VP ++ V F Sbjct: 58 LKSRLDALLDHFLRA---PGKLPARVRLILGLAAYELSYLDRVPAYASVNWAVDAVKADF 114 Query: 139 YGDEPKFINAVLDKVSR 155 K N VL V R Sbjct: 115 GQGLSKMANGVLRSVER 131 >gi|293380312|ref|ZP_06626386.1| ribosomal RNA small subunit methyltransferase B [Lactobacillus crispatus 214-1] gi|295693192|ref|YP_003601802.1| sun protein [Lactobacillus crispatus ST1] gi|290923127|gb|EFE00056.1| ribosomal RNA small subunit methyltransferase B [Lactobacillus crispatus 214-1] gi|295031298|emb|CBL50777.1| SUN protein [Lactobacillus crispatus ST1] Length = 441 Score = 57.0 bits (137), Expect = 1e-06, Method: Composition-based stats. Identities = 19/99 (19%), Positives = 39/99 (39%), Gaps = 14/99 (14%) Query: 64 VDLEWFRVIIHGVMDRKQ----HIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECH 119 D I++G + + + L+ + LTEK+ + +L + +LI Sbjct: 41 ADQNLATNIVYGTIQYRLFLEYQLKGLVRTKLTEKY--------IKPLLLMSLYQLIFLD 92 Query: 120 SVPVEVIISEYVCIAHDFFYGDEPKF--INAVLDKVSRK 156 VP ++ E +A + F +N +L +R+ Sbjct: 93 KVPDRAVLDEANKLAKQYGKRHSAGFRLVNGILRSFTRR 131 >gi|256849782|ref|ZP_05555213.1| rRNA methylase [Lactobacillus crispatus MV-1A-US] gi|262046519|ref|ZP_06019480.1| ribosomal RNA small subunit methyltransferase B [Lactobacillus crispatus MV-3A-US] gi|312984157|ref|ZP_07791503.1| ribosomal RNA small subunit methyltransferase B [Lactobacillus crispatus CTV-05] gi|256713271|gb|EEU28261.1| rRNA methylase [Lactobacillus crispatus MV-1A-US] gi|260572968|gb|EEX29527.1| ribosomal RNA small subunit methyltransferase B [Lactobacillus crispatus MV-3A-US] gi|310894376|gb|EFQ43452.1| ribosomal RNA small subunit methyltransferase B [Lactobacillus crispatus CTV-05] Length = 453 Score = 56.6 bits (136), Expect = 1e-06, Method: Composition-based stats. Identities = 19/99 (19%), Positives = 39/99 (39%), Gaps = 14/99 (14%) Query: 64 VDLEWFRVIIHGVMDRKQ----HIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECH 119 D I++G + + + L+ + LTEK+ + +L + +LI Sbjct: 53 ADQNLATNIVYGTIQYRLFLEYQLKGLVRTKLTEKY--------IKPLLLMSLYQLIFLD 104 Query: 120 SVPVEVIISEYVCIAHDFFYGDEPKF--INAVLDKVSRK 156 VP ++ E +A + F +N +L +R+ Sbjct: 105 KVPDRAVLDEANKLAKQYGKRHSAGFRLVNGILRSFTRR 143 >gi|116514363|ref|YP_813269.1| tRNA and rRNA cytosine-C5-methylase [Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365] gi|116093678|gb|ABJ58831.1| tRNA and rRNA cytosine-C5-methylase [Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365] Length = 438 Score = 56.6 bits (136), Expect = 1e-06, Method: Composition-based stats. Identities = 12/104 (11%), Positives = 39/104 (37%), Gaps = 8/104 (7%) Query: 59 SVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRL-DMILCSILRAGVLELIE 117 + + +++G + + +++ + + RL + + +L ++ Sbjct: 34 AKLPDEESRLATNLVYGTIQYQLYLEYQLKDLVKA-----RLREPYIKPLLLMSAYQIFF 88 Query: 118 CHSVPVEVIISEYVCIAHDFFYGDEPKF--INAVLDKVSRKEEI 159 VP ++ E +A + + +N +L + R+ E+ Sbjct: 89 LDKVPNRAVLDEANKLAKVYGRPKSSGYRLVNGILRSLLRRGEV 132 >gi|300811705|ref|ZP_07092180.1| ribosomal RNA small subunit methyltransferase B [Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4] gi|300497332|gb|EFK32379.1| ribosomal RNA small subunit methyltransferase B [Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4] Length = 438 Score = 56.6 bits (136), Expect = 1e-06, Method: Composition-based stats. Identities = 18/147 (12%), Positives = 53/147 (36%), Gaps = 19/147 (12%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 + AR A+ L ++I++ +Y + + + +++G Sbjct: 2 KTNARTVALDTL----------MKVINQ-GSYSNISLNHALKAAKLPGEESRLATNLVYG 50 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRL-DMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134 + + +++ + + RL + + +L ++ VP ++ E +A Sbjct: 51 TIQYQLYLEYQLKDLVKA-----RLREPYIKPLLLMSAYQIFFLDKVPNRAVLDEANKLA 105 Query: 135 HDFFYGDEPKF--INAVLDKVSRKEEI 159 + + +N +L + R+ E+ Sbjct: 106 KGYGRPKSSGYRLVNGILRSLLRRREV 132 >gi|269127209|ref|YP_003300579.1| Fmu (Sun) domain-containing protein [Thermomonospora curvata DSM 43183] gi|268312167|gb|ACY98541.1| Fmu (Sun) domain protein [Thermomonospora curvata DSM 43183] Length = 471 Score = 56.6 bits (136), Expect = 1e-06, Method: Composition-based stats. Identities = 31/154 (20%), Positives = 55/154 (35%), Gaps = 14/154 (9%) Query: 7 KKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDV---ESVYLH 63 + + R R D++ + E+I +T A+ L V E Sbjct: 10 RAGRRPGAPRRTGRPQ--------DLVRRTAFEVIRAVQTRDAYANLLLPVRLRERGLTG 61 Query: 64 VDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPV 123 D + +G + + D ++ C R+D L +LR G +L+ +P Sbjct: 62 RDAALATELTYGTLRGRGTYDAVLEVCSDR--PLRRIDEPLLDVLRLGAHQLLGTR-IPP 118 Query: 124 EVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKE 157 + V +A F NAVL KV+ ++ Sbjct: 119 HAAVGTAVELARSVVGAGRAGFANAVLRKVATRD 152 >gi|313124092|ref|YP_004034351.1| tRNA and rRNA cytosine-c5-methylase [Lactobacillus delbrueckii subsp. bulgaricus ND02] gi|312280655|gb|ADQ61374.1| tRNA and rRNA cytosine-C5-methylase [Lactobacillus delbrueckii subsp. bulgaricus ND02] Length = 438 Score = 56.6 bits (136), Expect = 1e-06, Method: Composition-based stats. Identities = 12/104 (11%), Positives = 39/104 (37%), Gaps = 8/104 (7%) Query: 59 SVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRL-DMILCSILRAGVLELIE 117 + + +++G + + +++ + + RL + + +L ++ Sbjct: 34 AKLPGEESRLATNLVYGTIQYQLYLEYQLKDLVKA-----RLREPYIKPLLLMSAYQIFF 88 Query: 118 CHSVPVEVIISEYVCIAHDFFYGDEPKF--INAVLDKVSRKEEI 159 VP ++ E +A + + +N +L + R+ E+ Sbjct: 89 LDKVPNRAVLDEANKLAKAYGRPKSSGYRLVNGILHSLLRRGEV 132 >gi|104774278|ref|YP_619258.1| putative RNA methylase [Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842] gi|103423359|emb|CAI98212.1| Putative RNA methylase [Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842] Length = 438 Score = 56.6 bits (136), Expect = 1e-06, Method: Composition-based stats. Identities = 18/147 (12%), Positives = 53/147 (36%), Gaps = 19/147 (12%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 + AR A+ L ++I++ +Y + + + +++G Sbjct: 2 KTNARTVALDTL----------MKVINQ-GSYSNISLNHALKAAKLPGEESRLATNLVYG 50 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRL-DMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134 + + +++ + + RL + + +L ++ VP ++ E +A Sbjct: 51 TIQYQLYLEYQLKDLVKA-----RLREPYIKPLLLMSAYQIFFLDKVPNRAVLDEANKLA 105 Query: 135 HDFFYGDEPKF--INAVLDKVSRKEEI 159 + + +N +L + R+ E+ Sbjct: 106 KVYGRPKSSGYRLVNGILHSLLRRGEV 132 >gi|325126062|gb|ADY85392.1| rRNA methylase [Lactobacillus delbrueckii subsp. bulgaricus 2038] Length = 438 Score = 56.6 bits (136), Expect = 1e-06, Method: Composition-based stats. Identities = 12/104 (11%), Positives = 39/104 (37%), Gaps = 8/104 (7%) Query: 59 SVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRL-DMILCSILRAGVLELIE 117 + + +++G + + +++ + + RL + + +L ++ Sbjct: 34 AKLPDEESRLATNLVYGTIQYQLYLEYQLKDLVKA-----RLREPYIKPLLLMSAYQIFF 88 Query: 118 CHSVPVEVIISEYVCIAHDFFYGDEPKF--INAVLDKVSRKEEI 159 VP ++ E +A + + +N +L + R+ E+ Sbjct: 89 LDKVPNRAVLDEANKLAKVYGRPKSSGYRLVNGILRSLLRRGEV 132 >gi|313678447|ref|YP_004056187.1| NusB family protein [Mycoplasma bovis PG45] gi|312950674|gb|ADR25269.1| NusB family protein [Mycoplasma bovis PG45] Length = 139 Score = 56.6 bits (136), Expect = 1e-06, Method: Composition-based stats. Identities = 21/99 (21%), Positives = 45/99 (45%), Gaps = 6/99 (6%) Query: 59 SVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIEC 118 S +D E F+ + + + I L + ++++L ++ +IL EL Sbjct: 32 SEESDIDNEQFKQL-ELISLNYDYYQKTILKFLNQNTAWTKLPALVRAILINTTHELF-- 88 Query: 119 HSVPVEVIISEYVCIAHDFFYGDE--PKFINAVLDKVSR 155 S+ +V+I+E V I F+ + K +NA++ + + Sbjct: 89 -SITPKVVINEAVEITKYFYDTESNFYKLVNAIVQNIYK 126 >gi|308177752|ref|YP_003917158.1| RNA methyltransferase [Arthrobacter arilaitensis Re117] gi|307745215|emb|CBT76187.1| putative RNA methyltransferase [Arthrobacter arilaitensis Re117] Length = 507 Score = 56.6 bits (136), Expect = 1e-06, Method: Composition-based stats. Identities = 32/149 (21%), Positives = 57/149 (38%), Gaps = 17/149 (11%) Query: 12 LSHRRGIA---RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEW 68 R+ A RL A + L S ++ + + + +LD D + Sbjct: 38 PGQRKRAADPARLVAFRTL-----REVSGSDAYANLVLPKMIREYQLD------RRDAGF 86 Query: 69 FRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIIS 128 + +G + + D ++++ + S LD + LR G +L+ VP + Sbjct: 87 ATELAYGALRGQGFYDAILATLVDR--DLSELDPAILDALRLGAHQLLAMR-VPKHAALD 143 Query: 129 EYVCIAHDFFYGDEPKFINAVLDKVSRKE 157 E V +A INAVL +VS +E Sbjct: 144 ETVSLARAQIGAGPSGLINAVLRRVSGQE 172 >gi|326382170|ref|ZP_08203862.1| Fmu (Sun) domain-containing protein [Gordonia neofelifaecis NRRL B-59395] gi|326198900|gb|EGD56082.1| Fmu (Sun) domain-containing protein [Gordonia neofelifaecis NRRL B-59395] Length = 480 Score = 56.6 bits (136), Expect = 1e-06, Method: Composition-based stats. Identities = 29/127 (22%), Positives = 49/127 (38%), Gaps = 3/127 (2%) Query: 32 IIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCL 91 I+ + E + Y +L E D + +G +D +IS+ Sbjct: 38 IVARDVLRAVRERDAYANLLLPKLLRERKISGRDAGLATELTYGTARSMGFLDAVISAA- 96 Query: 92 TEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLD 151 + +D L +LR G +L+ + +S V IA F+NAVL Sbjct: 97 -AGRPAAEIDGPLLDVLRLGAYQLL-RTRIGSHAAVSTSVDIARSENGMGPSGFVNAVLR 154 Query: 152 KVSRKEE 158 KVS+++E Sbjct: 155 KVSQRDE 161 >gi|312139583|ref|YP_004006919.1| RNA binding sun protein [Rhodococcus equi 103S] gi|311888922|emb|CBH48235.1| putative RNA binding Sun protein [Rhodococcus equi 103S] Length = 437 Score = 56.3 bits (135), Expect = 1e-06, Method: Composition-based stats. Identities = 25/119 (21%), Positives = 43/119 (36%), Gaps = 3/119 (2%) Query: 40 IISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSR 99 + E + Y L E D + +G + +D +I+ C Sbjct: 4 AVRERDAYANLVLPGLLRERRLDGRDAALATELAYGAARARGLLDAVIAEC--AGRPVEE 61 Query: 100 LDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEE 158 +D L +L G +L+ P + + V + + F+NAVL +VS K E Sbjct: 62 IDGPLLDVLELGAYQLLRTRIAPHAAVAT-SVDLVRAEAGPGKAGFVNAVLRRVSEKTE 119 >gi|163841091|ref|YP_001625496.1| 16S rRNA m(5)C 967 methyltransferase [Renibacterium salmoninarum ATCC 33209] gi|162954567|gb|ABY24082.1| 16S rRNA m(5)C 967 methyltransferase [Renibacterium salmoninarum ATCC 33209] Length = 458 Score = 56.3 bits (135), Expect = 1e-06, Method: Composition-based stats. Identities = 24/103 (23%), Positives = 44/103 (42%), Gaps = 9/103 (8%) Query: 58 ESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSIL---RAGVLE 114 ++ D + +G + K D +I+SC+ L + +IL R G + Sbjct: 27 QNRLDKRDAGLATELCYGALRGKGTYDAIIASCVDRP-----LAEVDEAILDALRLGSHQ 81 Query: 115 LIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKE 157 L+ +P +++ V +A FINAVL K++ K+ Sbjct: 82 LLAMR-IPPHAAVNQTVGLARAVIGAGPASFINAVLRKIAAKD 123 >gi|326773324|ref|ZP_08232607.1| ribosomal RNA small subunit methyltransferase B [Actinomyces viscosus C505] gi|326636554|gb|EGE37457.1| ribosomal RNA small subunit methyltransferase B [Actinomyces viscosus C505] Length = 515 Score = 56.3 bits (135), Expect = 1e-06, Method: Composition-based stats. Identities = 27/145 (18%), Positives = 53/145 (36%), Gaps = 15/145 (10%) Query: 11 KLSHRRG-IARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF 69 + + R AR A++ L + + +LD D + Sbjct: 41 RSARGRSDSARQVALEVL-----TRVRRDDAFANLLLPELLETADLD------RRDAGFA 89 Query: 70 RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISE 129 + +G + + D +I++C R+D + +LR G +L+ V +S Sbjct: 90 TALTYGTLRLRGRYDAMIAACTDR--PLERIDPAVLDVLRLGAHQLMGMR-VAQHAAVST 146 Query: 130 YVCIAHDFFYGDEPKFINAVLDKVS 154 V +A F+NAV+ ++S Sbjct: 147 TVDLATTSCGRGAATFVNAVMRRLS 171 >gi|291300071|ref|YP_003511349.1| Fmu (Sun) domain-containing protein [Stackebrandtia nassauensis DSM 44728] gi|290569291|gb|ADD42256.1| Fmu (Sun) domain protein [Stackebrandtia nassauensis DSM 44728] Length = 532 Score = 56.3 bits (135), Expect = 1e-06, Method: Composition-based stats. Identities = 25/91 (27%), Positives = 42/91 (46%), Gaps = 3/91 (3%) Query: 65 DLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVE 124 D + + +G + R+ +D +I+S + S LD + +LR GV +L+ V Sbjct: 63 DAAFATELSYGTLRRRGSLDAVIASA--SGRAVSALDQSVADVLRLGVYQLLYTR-VAAH 119 Query: 125 VIISEYVCIAHDFFYGDEPKFINAVLDKVSR 155 + V +A F+NAV+ KVSR Sbjct: 120 AAANTTVSLARKVCGHRPAGFVNAVMRKVSR 150 >gi|325957114|ref|YP_004292526.1| 16S rRNA methyltransferase B [Lactobacillus acidophilus 30SC] gi|325333679|gb|ADZ07587.1| 16S rRNA methyltransferase B [Lactobacillus acidophilus 30SC] Length = 442 Score = 56.3 bits (135), Expect = 1e-06, Method: Composition-based stats. Identities = 13/103 (12%), Positives = 35/103 (33%), Gaps = 12/103 (11%) Query: 59 SVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILC---SILRAGVLEL 115 S D +++G + + ++ + R+ + +L + ++ Sbjct: 36 SDLSQADQNLATKVVYGTIQYRLFLEYQLKG-------LVRIKLTEKYLKPLLLMSIYQI 88 Query: 116 IECHSVPVEVIISEYVCIAHDFFYGDEPKF--INAVLDKVSRK 156 + VP ++ E +A F + +N +L R+ Sbjct: 89 VFLDKVPNRAVLDEANKLAKQFGKHHSSGYRVVNGILRSFIRR 131 >gi|226355844|ref|YP_002785584.1| methyltransferase RsmB, Sun protein [Deinococcus deserti VCD115] gi|226317834|gb|ACO45830.1| putative methyltransferase RsmB, Sun protein [Deinococcus deserti VCD115] Length = 420 Score = 56.3 bits (135), Expect = 2e-06, Method: Composition-based stats. Identities = 29/155 (18%), Positives = 53/155 (34%), Gaps = 24/155 (15%) Query: 1 MTIQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESV 60 MT ++ + AR AV+ L ++ + + Sbjct: 1 MTDTRPRRPAPYNP----ARELAVRVLLRVLHADTFAAPALDAALH-----------SAR 45 Query: 61 YLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHS 120 D I++G + + +S L+E + ++L AG E + + Sbjct: 46 LPARDSGLATHIVYGTLRHHLSLSTALSPLLSEDTH----PKV-RTLLLAGAFEKLYLGT 100 Query: 121 VPVEVIISEYVCIAHDFFYGDE-PKFINAVLDKVS 154 P V SEYV +A P +NAVL +++ Sbjct: 101 PPHAVA-SEYVNLAR--GARLAPPGLVNAVLRRIA 132 >gi|260663557|ref|ZP_05864447.1| ribosomal RNA small subunit methyltransferase B [Lactobacillus fermentum 28-3-CHN] gi|260552098|gb|EEX25151.1| ribosomal RNA small subunit methyltransferase B [Lactobacillus fermentum 28-3-CHN] Length = 448 Score = 56.3 bits (135), Expect = 2e-06, Method: Composition-based stats. Identities = 15/100 (15%), Positives = 35/100 (35%), Gaps = 4/100 (4%) Query: 57 VESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELI 116 D +++G + ++ +D +S + K ++ + ++L + + Sbjct: 38 ESGQLSGADRRLVTALVYGTLQHQRTLDYWLSPFIAGK----KVRPWVKTLLLMTLFQYQ 93 Query: 117 ECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRK 156 VP E + IA +F+ VL + R Sbjct: 94 YLDRVPNFAATDEAIEIAKRRGNPGVRRFVTGVLHAILRN 133 >gi|323466286|gb|ADX69973.1| rRNA SAM-dependent methyltransferase RmsB [Lactobacillus helveticus H10] Length = 448 Score = 56.3 bits (135), Expect = 2e-06, Method: Composition-based stats. Identities = 16/95 (16%), Positives = 36/95 (37%), Gaps = 6/95 (6%) Query: 64 VDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPV 123 D I++G + + + ++ L K + + L +L + ++I VP Sbjct: 47 ADQNLATRIVYGTIQYRLFFEYQLTGLLKTKIT----EKYLKPLLLMSLYQIIFLDKVPN 102 Query: 124 EVIISEYVCIAHDFFYGDEPKF--INAVLDKVSRK 156 ++ E +A F + +N +L R+ Sbjct: 103 RAVLDEANKLAKQFGKHHSSGYRVVNGILRAFIRR 137 >gi|163757448|ref|ZP_02164537.1| putative ribosomal RNA small subunit methyltransferase B [Hoeflea phototrophica DFL-43] gi|162284950|gb|EDQ35232.1| putative ribosomal RNA small subunit methyltransferase B [Hoeflea phototrophica DFL-43] Length = 446 Score = 56.3 bits (135), Expect = 2e-06, Method: Composition-based stats. Identities = 34/169 (20%), Positives = 57/169 (33%), Gaps = 31/169 (18%) Query: 1 MTIQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESV 60 M + + DLK AR AA T +++ R D LD Sbjct: 1 MPSRYDPVDLKPGL---AARQAA--------------TRLLAAVTESRASLDGLLDPAGG 43 Query: 61 YL------HVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLE 114 D R I+ + + ID I +T L +LR G + Sbjct: 44 NPAFTGLGPQDRLLVRAILLSALRHLRVIDAYIDELVTS--PLPEGAKALRQLLRVGAAQ 101 Query: 115 LIECHSVPVEVIISEYVCIAHDFFYGDEPKF---INAVLDKVSRKEEIK 160 ++ VP + V A+ +F +NA+L ++ R++E + Sbjct: 102 ILF-LDVPDRAAVDLAVSQAN--GDPRNRRFAGLVNALLRRMGREKESR 147 >gi|227875402|ref|ZP_03993543.1| ribosomal RNA small subunit methyltransferase B [Mobiluncus mulieris ATCC 35243] gi|269977344|ref|ZP_06184317.1| ribosomal RNA small subunit methyltransferase B [Mobiluncus mulieris 28-1] gi|307700926|ref|ZP_07637951.1| putative ribosomal RNA small subunit methyltransferase B [Mobiluncus mulieris FB024-16] gi|227843956|gb|EEJ54124.1| ribosomal RNA small subunit methyltransferase B [Mobiluncus mulieris ATCC 35243] gi|269934647|gb|EEZ91208.1| ribosomal RNA small subunit methyltransferase B [Mobiluncus mulieris 28-1] gi|307613921|gb|EFN93165.1| putative ribosomal RNA small subunit methyltransferase B [Mobiluncus mulieris FB024-16] Length = 485 Score = 56.3 bits (135), Expect = 2e-06, Method: Composition-based stats. Identities = 22/92 (23%), Positives = 38/92 (41%), Gaps = 3/92 (3%) Query: 65 DLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVE 124 D + + +G + + D +I+ + LD + ++LR G EL+ V Sbjct: 59 DAAFATELAYGTLRLQGRYDAIIARLVDR--DLGELDADVLTVLRLGCHELLGMR-VESY 115 Query: 125 VIISEYVCIAHDFFYGDEPKFINAVLDKVSRK 156 + V +A D +NAVL +VS K Sbjct: 116 AAVDSAVDLARDRISTGPAGMVNAVLRRVSEK 147 >gi|306818715|ref|ZP_07452437.1| ribosomal RNA small subunit methyltransferase B [Mobiluncus mulieris ATCC 35239] gi|304648401|gb|EFM45704.1| ribosomal RNA small subunit methyltransferase B [Mobiluncus mulieris ATCC 35239] Length = 485 Score = 55.9 bits (134), Expect = 2e-06, Method: Composition-based stats. Identities = 22/92 (23%), Positives = 38/92 (41%), Gaps = 3/92 (3%) Query: 65 DLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVE 124 D + + +G + + D +I+ + LD + ++LR G EL+ V Sbjct: 59 DAAFATELAYGTLRLQGRYDAIIARLVDR--DLGELDADVLTVLRLGCHELLGMR-VESY 115 Query: 125 VIISEYVCIAHDFFYGDEPKFINAVLDKVSRK 156 + V +A D +NAVL +VS K Sbjct: 116 AAVDSAVDLARDRISTGPAGMVNAVLRRVSEK 147 >gi|289450433|ref|YP_003475239.1| putative ribosomal RNA small subunit methyltransferase B [Clostridiales genomosp. BVAB3 str. UPII9-5] gi|289184980|gb|ADC91405.1| putative ribosomal RNA small subunit methyltransferase B [Clostridiales genomosp. BVAB3 str. UPII9-5] Length = 498 Score = 55.9 bits (134), Expect = 2e-06, Method: Composition-based stats. Identities = 27/135 (20%), Positives = 50/135 (37%), Gaps = 21/135 (15%) Query: 20 RLAAVQALYQ----IDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 R AA Q +Y D+ ++ + + + L V I++G Sbjct: 15 REAAAQVIYHCLALHDMASFDP--VLRQTVNFLSLPERNLAV-------------AIVYG 59 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135 M ID ++ +LD L S+LR V +L ++P +++E + Sbjct: 60 TMTYLYTIDYVLGKHCKIG--LEKLDPWLKSVLRTAVWQLRYSRNLPETAVVNECCKLVK 117 Query: 136 DFFYGDEPKFINAVL 150 + + F NAV+ Sbjct: 118 KYRHQGMVDFANAVM 132 >gi|320534324|ref|ZP_08034813.1| putative ribosomal RNA small subunit methyltransferase B [Actinomyces sp. oral taxon 171 str. F0337] gi|320133459|gb|EFW25918.1| putative ribosomal RNA small subunit methyltransferase B [Actinomyces sp. oral taxon 171 str. F0337] Length = 463 Score = 55.9 bits (134), Expect = 2e-06, Method: Composition-based stats. Identities = 23/102 (22%), Positives = 42/102 (41%), Gaps = 3/102 (2%) Query: 53 TELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGV 112 EL + D + + +G + + D +I++C R+D + ILR G Sbjct: 21 PELLETADLDRRDAGFATALTYGTLRLQGRYDAMIAACTDR--PLERIDPAVLDILRLGA 78 Query: 113 LELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVS 154 +L+ V +S V +A F+NAV+ ++S Sbjct: 79 HQLMGMR-VAQHAAVSTTVDLATTSCGRGAATFVNAVMRRLS 119 >gi|227893309|ref|ZP_04011114.1| rRNA SAM-dependent methyltransferase RmsB [Lactobacillus ultunensis DSM 16047] gi|227864889|gb|EEJ72310.1| rRNA SAM-dependent methyltransferase RmsB [Lactobacillus ultunensis DSM 16047] Length = 455 Score = 55.9 bits (134), Expect = 2e-06, Method: Composition-based stats. Identities = 18/99 (18%), Positives = 40/99 (40%), Gaps = 14/99 (14%) Query: 64 VDLEWFRVIIHGVMDRKQ----HIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECH 119 D I++G + + + LI + LTE++ ++ +L + ++I + Sbjct: 53 ADQNLATRIVYGTIQYRLFLEYQLKGLIRTKLTERY----INP----LLLMSLYQIIFLN 104 Query: 120 SVPVEVIISEYVCIAHDFFYGDEPKF--INAVLDKVSRK 156 VP ++ E +A F + +N +L R+ Sbjct: 105 KVPNRAVLDEANKLAKQFGRHHSSGYRIVNGILRSFIRR 143 >gi|221640599|ref|YP_002526861.1| Fmu (Sun) domain-containing protein [Rhodobacter sphaeroides KD131] gi|221161380|gb|ACM02360.1| Fmu (Sun) domain protein [Rhodobacter sphaeroides KD131] Length = 410 Score = 55.9 bits (134), Expect = 2e-06, Method: Composition-based stats. Identities = 20/126 (15%), Positives = 46/126 (36%), Gaps = 9/126 (7%) Query: 31 DIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSC 90 + G + T + + + + D+ + + + V+ D L++ Sbjct: 4 EARGMAVTLLDAVLGEGKLLSQALADLPGTAAPAERARAQRLASSVLRHLGPADRLLAPH 63 Query: 91 LTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEP--KFINA 148 L + + +ILR +E+ + P V+ S V +A + +NA Sbjct: 64 LRKAPPL-----TVRNILRLATVEMAADGAAPHGVV-SSAVDLARR-GRRTQHLAGLVNA 116 Query: 149 VLDKVS 154 VL +++ Sbjct: 117 VLRRIA 122 >gi|157373174|ref|YP_001471774.1| sun protein [Shewanella sediminis HAW-EB3] gi|157315548|gb|ABV34646.1| sun protein [Shewanella sediminis HAW-EB3] Length = 426 Score = 55.9 bits (134), Expect = 2e-06, Method: Composition-based stats. Identities = 28/139 (20%), Positives = 53/139 (38%), Gaps = 15/139 (10%) Query: 20 RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79 R A + ++Q+ G S + + + + + + D + +GVM Sbjct: 4 RALAAKVVFQVLEKGISLSVALPDQQRH------------LESGKDKALMAELCYGVMRH 51 Query: 80 KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139 +D L+S C+++ IL +L G +L +P ISE + Sbjct: 52 LPQLDKLVSDCMSK--PLKGKQRILHQLLLVGCYQL-YFTRIPSHAAISETAEACRQLKF 108 Query: 140 GDEPKFINAVLDKVSRKEE 158 K +N VL + R+E+ Sbjct: 109 EGLVKVVNGVLRNIQRQEK 127 >gi|116629419|ref|YP_814591.1| tRNA and rRNA cytosine-C5-methylase [Lactobacillus gasseri ATCC 33323] gi|311110932|ref|ZP_07712329.1| ribosomal RNA small subunit methyltransferase B [Lactobacillus gasseri MV-22] gi|116095001|gb|ABJ60153.1| tRNA and rRNA cytosine-C5-methylase [Lactobacillus gasseri ATCC 33323] gi|311066086|gb|EFQ46426.1| ribosomal RNA small subunit methyltransferase B [Lactobacillus gasseri MV-22] Length = 438 Score = 55.9 bits (134), Expect = 2e-06, Method: Composition-based stats. Identities = 25/145 (17%), Positives = 50/145 (34%), Gaps = 17/145 (11%) Query: 17 GIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGV 76 AR A++ L ++ ++ + EL V+ D I++G Sbjct: 2 SNARTVALETL----------IKVFNQKSYSNIALNNEL-VKHELKPADKALATRIVYGT 50 Query: 77 MDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHD 136 + K ++ + + K D L +L + VP I E +A Sbjct: 51 IQYKIFLEYQLKPLIKTKLR----DKFLMPLLLMSAYQYFFLEKVPANAIFDEANKLAKK 106 Query: 137 FFYGD--EPKFINAVLDKVSRKEEI 159 F + K +N +L + R+ ++ Sbjct: 107 FAKKNSGSYKLVNGILRALERQGKV 131 >gi|224369793|ref|YP_002603957.1| RsmB [Desulfobacterium autotrophicum HRM2] gi|223692510|gb|ACN15793.1| RsmB [Desulfobacterium autotrophicum HRM2] Length = 455 Score = 55.9 bits (134), Expect = 2e-06, Method: Composition-based stats. Identities = 28/133 (21%), Positives = 50/133 (37%), Gaps = 12/133 (9%) Query: 20 RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79 R A+ L + + + +I+ Y H D II+G + Sbjct: 17 RFLALTILIENESSKFTLDKILERYSA----------QLESLAHRDRALANAIIYGTLRW 66 Query: 80 KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139 K+H+D LI+ +++ +C LR + + + +PV ++ V A Sbjct: 67 KEHLDWLITPFSKR--PLDQIEPAICYTLRTALYQTVFMDKIPVSAAVNTAVNAAKKLSN 124 Query: 140 GDEPKFINAVLDK 152 F+NAVL K Sbjct: 125 TGAAGFVNAVLRK 137 >gi|260495441|ref|ZP_05815567.1| ribosomal RNA small subunit methyltransferase B [Fusobacterium sp. 3_1_33] gi|260196978|gb|EEW94499.1| ribosomal RNA small subunit methyltransferase B [Fusobacterium sp. 3_1_33] Length = 435 Score = 55.9 bits (134), Expect = 2e-06, Method: Composition-based stats. Identities = 18/99 (18%), Positives = 41/99 (41%), Gaps = 12/99 (12%) Query: 65 DLEWFRVIIHGVMDRKQHIDLLISSC---LTEKWSFSRLDMILCSILRAGVLELIECHSV 121 + + I +GV+ K+ +D +I + ++W + ++LR + ++ +S Sbjct: 37 EKTFITEIFYGVLRNKKFLDYIIERYTKEIKKEW--------IRNLLRISIYQITFMNSD 88 Query: 122 PVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIK 160 V+ E + + KFIN L R ++ + Sbjct: 89 DKGVVW-EATELVKKKYGMTISKFINGTLRNYLRNKDTE 126 >gi|238852568|ref|ZP_04642978.1| ribosomal RNA small subunit methyltransferase B [Lactobacillus gasseri 202-4] gi|238834714|gb|EEQ26941.1| ribosomal RNA small subunit methyltransferase B [Lactobacillus gasseri 202-4] Length = 438 Score = 55.9 bits (134), Expect = 2e-06, Method: Composition-based stats. Identities = 25/145 (17%), Positives = 50/145 (34%), Gaps = 17/145 (11%) Query: 17 GIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGV 76 AR A++ L ++ ++ + EL V+ D I++G Sbjct: 2 SNARTVALETL----------IKVFNQKSYSNIALNNEL-VKHELKPADKALATRIVYGT 50 Query: 77 MDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHD 136 + K ++ + + K D L +L + VP I E +A Sbjct: 51 IQYKIFLEYQLKPLIKTKLR----DKFLMPLLLMSAYQYFFLEKVPANAIFDEANKLAKK 106 Query: 137 FFYGD--EPKFINAVLDKVSRKEEI 159 F + K +N +L + R+ ++ Sbjct: 107 FAKKNSGSYKLVNGILRALERQGKV 131 >gi|126463525|ref|YP_001044639.1| Fmu (Sun) domain-containing protein [Rhodobacter sphaeroides ATCC 17029] gi|126105189|gb|ABN77867.1| Fmu (Sun) domain protein [Rhodobacter sphaeroides ATCC 17029] Length = 410 Score = 55.9 bits (134), Expect = 2e-06, Method: Composition-based stats. Identities = 20/126 (15%), Positives = 46/126 (36%), Gaps = 9/126 (7%) Query: 31 DIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSC 90 + G + T + + + + D+ + + + V+ D L++ Sbjct: 4 EARGMAVTLLDAVLGEGKLLSQALADLPGTAAPAERARAQRLASSVLRHLGPADRLLAPH 63 Query: 91 LTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEP--KFINA 148 L + + +ILR +E+ + P V+ S V +A + +NA Sbjct: 64 LRKAPPL-----TVRNILRLATVEMAADGAAPHGVV-SSAVDLARR-GRRTQHLAGLVNA 116 Query: 149 VLDKVS 154 VL +++ Sbjct: 117 VLRRIA 122 >gi|268319212|ref|YP_003292868.1| rRNA methylase [Lactobacillus johnsonii FI9785] gi|262397587|emb|CAX66601.1| rRNA methylase [Lactobacillus johnsonii FI9785] Length = 440 Score = 55.9 bits (134), Expect = 2e-06, Method: Composition-based stats. Identities = 24/145 (16%), Positives = 50/145 (34%), Gaps = 17/145 (11%) Query: 17 GIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGV 76 AR A++ L ++ ++ + EL ++ D I++G Sbjct: 2 SNARTVALETL----------IKVFNQKSYSNIALNNEL-IKHDLKLADKALATRIVYGT 50 Query: 77 MDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHD 136 + K ++ + + K D L +L + VP I E +A Sbjct: 51 IQYKIFLEYQLKPLIKTKLR----DSFLKPLLLMSAYQYFFLEKVPANAIFDEANKLAKK 106 Query: 137 FFYGD--EPKFINAVLDKVSRKEEI 159 + + K +N +L + R+ +I Sbjct: 107 YSKRNSGSYKLVNGILRALERQGKI 131 >gi|170724406|ref|YP_001758432.1| sun protein [Shewanella woodyi ATCC 51908] gi|169809753|gb|ACA84337.1| sun protein [Shewanella woodyi ATCC 51908] Length = 425 Score = 55.5 bits (133), Expect = 2e-06, Method: Composition-based stats. Identities = 32/139 (23%), Positives = 53/139 (38%), Gaps = 15/139 (10%) Query: 20 RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79 R A + ++Q+ G S + + E + + D + +GVM + Sbjct: 4 RALAAKVVFQVLEKGISLSVALPEQQKH------------CESGKDKALLAELSYGVMRQ 51 Query: 80 KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139 +D LIS C+ + IL +L G +L +P ISE + Sbjct: 52 LPQLDKLISDCMAK--PLKGKQRILHQLLLVGCYQL-YFTRIPSHAAISETAEACRQLKF 108 Query: 140 GDEPKFINAVLDKVSRKEE 158 K INAVL + R+E+ Sbjct: 109 DGLVKVINAVLRNIQRQEK 127 >gi|317154835|ref|YP_004122883.1| NusB/RsmB/TIM44 [Desulfovibrio aespoeensis Aspo-2] gi|316945086|gb|ADU64137.1| NusB/RsmB/TIM44 [Desulfovibrio aespoeensis Aspo-2] Length = 425 Score = 55.5 bits (133), Expect = 2e-06, Method: Composition-based stats. Identities = 27/156 (17%), Positives = 45/156 (28%), Gaps = 20/156 (12%) Query: 3 IQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYL 62 Q K L AR A++AL G + + Sbjct: 2 NQHTPKPLPP------ARRIALEALSHCLFSGHDIQATLDTALS-----------AKPTD 44 Query: 63 HVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVP 122 D I +G + K ++ ++S L +L + + E+I VP Sbjct: 45 PRDTGLATEIAYGYLRHKGRVEYVLSRFLQ---DPGKLPPKMRLAMGVAAYEMIFLDKVP 101 Query: 123 VEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEE 158 + V + NAVL +V+ E Sbjct: 102 AYASVDWAVEFSKTKPGTRLSGLFNAVLRRVAELGE 137 >gi|227890276|ref|ZP_04008081.1| rRNA SAM-dependent methyltransferase RmsB [Lactobacillus johnsonii ATCC 33200] gi|227849090|gb|EEJ59176.1| rRNA SAM-dependent methyltransferase RmsB [Lactobacillus johnsonii ATCC 33200] Length = 438 Score = 55.5 bits (133), Expect = 2e-06, Method: Composition-based stats. Identities = 24/145 (16%), Positives = 50/145 (34%), Gaps = 17/145 (11%) Query: 17 GIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGV 76 AR A++ L ++ ++ + EL ++ D I++G Sbjct: 2 SNARTVALETL----------IKVFNQKSYSNIALNNEL-IKHDLKLADKALATRIVYGT 50 Query: 77 MDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHD 136 + K ++ + + K D L +L + VP I E +A Sbjct: 51 IQYKIFLEYQLKPLIKTKLR----DSFLKPLLLMSAYQYFFLEKVPANAIFDEANKLAKK 106 Query: 137 FFYGD--EPKFINAVLDKVSRKEEI 159 + + K +N +L + R+ +I Sbjct: 107 YSKRNSGSYKLVNGILRALERQGKI 131 >gi|78185142|ref|YP_377577.1| Fmu, rRNA SAM-dependent methyltransferase [Synechococcus sp. CC9902] gi|78169436|gb|ABB26533.1| Fmu, rRNA SAM-dependent methyltransferase [Synechococcus sp. CC9902] Length = 445 Score = 55.5 bits (133), Expect = 2e-06, Method: Composition-based stats. Identities = 20/111 (18%), Positives = 40/111 (36%), Gaps = 18/111 (16%) Query: 65 DLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMI--------LCSILRAGVLELI 116 D + +G + +++ +D W R+ + L +L G+ +L+ Sbjct: 45 DRGLATELAYGAIRQRRVLD---------GW-LDRMGKVPASKQPPKLRWLLHVGLYQLL 94 Query: 117 ECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRSGCVSA 167 +P ++ V +A G +N +L V R E +SA Sbjct: 95 LMERIPSAAAVNTTVELAKVSGLGRLAPVVNGLLRGVLRAHEAGEMLELSA 145 >gi|326803898|ref|YP_004321716.1| ribosomal RNA small subunit methyltransferase B [Aerococcus urinae ACS-120-V-Col10a] gi|326650964|gb|AEA01147.1| ribosomal RNA small subunit methyltransferase B [Aerococcus urinae ACS-120-V-Col10a] Length = 470 Score = 55.5 bits (133), Expect = 2e-06, Method: Composition-based stats. Identities = 28/150 (18%), Positives = 53/150 (35%), Gaps = 24/150 (16%) Query: 11 KLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFR 70 K S + AR A++ L ++ + E + ++ S D + + Sbjct: 15 KPSGLKASARYQAMETL-----------NLVYKGEAFVNQEVNQVLSYSRVEDSDRDLYT 63 Query: 71 VIIHGVMDRKQHIDLLISSCL-----TEKWSFSRLDMILCSILRAGVLELIECHSVPVEV 125 +++G + + L+ L T+KW L ++L + +VP Sbjct: 64 RLVYGSLQFHWTLQELLKQVLKLYKRTKKW--------LLALLELSAYQHYYLDAVPDHA 115 Query: 126 IISEYVCIAHDFFYGDEPKFINAVLDKVSR 155 I+ E V IA +F N L + R Sbjct: 116 IVDEAVRIAKKRGNQTMGRFTNGTLRNLFR 145 >gi|86741875|ref|YP_482275.1| putative RNA-binding Sun protein [Frankia sp. CcI3] gi|86568737|gb|ABD12546.1| putative RNA-binding Sun protein [Frankia sp. CcI3] Length = 491 Score = 55.5 bits (133), Expect = 2e-06, Method: Composition-based stats. Identities = 21/119 (17%), Positives = 43/119 (36%), Gaps = 3/119 (2%) Query: 36 STTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKW 95 + E +Y L S D + + +G + + +D ++ + + Sbjct: 27 EVLRAVDERGSYANLLLPSLLAGSGLSARDRGFVTELAYGSLRAQGTLDGVLDTATSR-- 84 Query: 96 SFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVS 154 +D + LR G +L+ VP ++ V + +F NAVL +V+ Sbjct: 85 PVHTIDPPVRDALRLGAYQLL-RTRVPAHAAVASTVELVRTTSGERPVRFANAVLRRVA 142 >gi|325068809|ref|ZP_08127482.1| tRNA/rRNA cytosine-C5-methylase [Actinomyces oris K20] Length = 253 Score = 55.5 bits (133), Expect = 3e-06, Method: Composition-based stats. Identities = 23/102 (22%), Positives = 42/102 (41%), Gaps = 3/102 (2%) Query: 53 TELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGV 112 EL + D + + +G + + D +I++C R+D + +LR G Sbjct: 21 PELLETADLDRRDAGFATALTYGTLRLQGRYDAMIAACTDR--PLERIDPAVLDVLRLGA 78 Query: 113 LELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVS 154 +L+ V +S V +A F+NAVL ++S Sbjct: 79 HQLMGMR-VAQHAAVSTTVDLATTSCGRGAATFVNAVLRRLS 119 >gi|220912433|ref|YP_002487742.1| Fmu (Sun) domain protein [Arthrobacter chlorophenolicus A6] gi|219859311|gb|ACL39653.1| Fmu (Sun) domain protein [Arthrobacter chlorophenolicus A6] Length = 527 Score = 55.5 bits (133), Expect = 3e-06, Method: Composition-based stats. Identities = 33/155 (21%), Positives = 56/155 (36%), Gaps = 17/155 (10%) Query: 3 IQDNKKDLKLSHR-RGI--ARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVES 59 Q N + + R R ARL A + L +++ + Y + Sbjct: 50 PQRNFTENAPAQRTRRADPARLVAFEVL-----------RAVAQEDAYANLVLPARIRQH 98 Query: 60 VYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECH 119 D + + G + + D +++ C+ +LD + LR GV +L+ Sbjct: 99 RLDKRDAGFATELSCGALRGQGTYDAVLARCVDR--PLDQLDPAVLDALRIGVHQLLAMR 156 Query: 120 SVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVS 154 VP + + V +A INAVL KVS Sbjct: 157 -VPAHAALDQTVGLARAVIGAGPSALINAVLRKVS 190 >gi|28378317|ref|NP_785209.1| rRNA methylase (putative) [Lactobacillus plantarum WCFS1] gi|28271152|emb|CAD64057.1| rRNA methylase (putative) [Lactobacillus plantarum WCFS1] Length = 447 Score = 55.5 bits (133), Expect = 3e-06, Method: Composition-based stats. Identities = 15/110 (13%), Positives = 44/110 (40%), Gaps = 3/110 (2%) Query: 46 TYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILC 105 Y +L + D+ +++GV+ + ++ ++ + ++D + Sbjct: 23 AYSNLQLNQLINDHQMDRRDINLLTNMVYGVIQHRLTLEYWLTPFVRH---PHQIDPWVR 79 Query: 106 SILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSR 155 +L + + + +P + +E + IA + +F+ VL ++ R Sbjct: 80 ELLLSALYQWQYLDKIPQRAVFNETIEIAKVKGHPGIRRFVTGVLHQMDR 129 >gi|315172961|gb|EFU16978.1| ribosomal RNA small subunit methyltransferase B [Enterococcus faecalis TX1346] Length = 459 Score = 55.5 bits (133), Expect = 3e-06, Method: Composition-based stats. Identities = 23/104 (22%), Positives = 45/104 (43%), Gaps = 3/104 (2%) Query: 53 TELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGV 112 E+ +S D F +++G + RK ++ ++ + + R+D + ++L + Sbjct: 36 NEMMTKSELSEKDGRLFTELVYGTISRKLLLEYYLTPFVKK---PQRVDNWVKNLLILSL 92 Query: 113 LELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRK 156 +L+ VP +I+E V I KF+N VL R Sbjct: 93 YQLLYLDKVPDHAVINEAVEIGKRRGNTGIGKFVNGVLRAFQRN 136 >gi|254556524|ref|YP_003062941.1| rRNA methylase (putative) [Lactobacillus plantarum JDM1] gi|254045451|gb|ACT62244.1| rRNA methylase (putative) [Lactobacillus plantarum JDM1] Length = 447 Score = 55.5 bits (133), Expect = 3e-06, Method: Composition-based stats. Identities = 15/110 (13%), Positives = 44/110 (40%), Gaps = 3/110 (2%) Query: 46 TYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILC 105 Y +L + D+ +++GV+ + ++ ++ + ++D + Sbjct: 23 AYSNLQLNQLINDHQMDRRDINLLTNMVYGVIQHRLTLEYWLTPFVRH---PHQIDPWVR 79 Query: 106 SILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSR 155 +L + + + +P + +E + IA + +F+ VL ++ R Sbjct: 80 ELLLSALYQWQYLDKIPQRAVFNETIEIAKVKGHPGIRRFVTGVLHQMDR 129 >gi|300767253|ref|ZP_07077165.1| ribosomal RNA small subunit methyltransferase B [Lactobacillus plantarum subsp. plantarum ATCC 14917] gi|308180467|ref|YP_003924595.1| ribosomal RNA small subunit methyltransferase B [Lactobacillus plantarum subsp. plantarum ST-III] gi|300495072|gb|EFK30228.1| ribosomal RNA small subunit methyltransferase B [Lactobacillus plantarum subsp. plantarum ATCC 14917] gi|308045958|gb|ADN98501.1| ribosomal RNA small subunit methyltransferase B [Lactobacillus plantarum subsp. plantarum ST-III] Length = 447 Score = 55.5 bits (133), Expect = 3e-06, Method: Composition-based stats. Identities = 15/110 (13%), Positives = 44/110 (40%), Gaps = 3/110 (2%) Query: 46 TYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILC 105 Y +L + D+ +++GV+ + ++ ++ + ++D + Sbjct: 23 AYSNLQLNQLINDHQMDRRDINLLTNMVYGVIQHRLTLEYWLTPFVRH---PHQIDPWVR 79 Query: 106 SILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSR 155 +L + + + +P + +E + IA + +F+ VL ++ R Sbjct: 80 ELLLSALYQWQYLDKIPQRAVFNETIEIAKVKGHPGIRRFVTGVLHQMDR 129 >gi|254821720|ref|ZP_05226721.1| Fmu protein [Mycobacterium intracellulare ATCC 13950] Length = 171 Score = 55.1 bits (132), Expect = 3e-06, Method: Composition-based stats. Identities = 22/101 (21%), Positives = 40/101 (39%), Gaps = 3/101 (2%) Query: 58 ESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIE 117 E D + + +G + +D +I + + +D +L +LR G +L+ Sbjct: 10 ERGITGRDAAFATELTYGACRSRGLLDAVIGAA--AGRTPQAIDPVLLDLLRLGAYQLL- 66 Query: 118 CHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEE 158 V +S V A F F+N VL +S ++E Sbjct: 67 RTRVDAHAAVSTTVEQAGIEFDSARAGFVNGVLRTISGRDE 107 >gi|260903811|ref|ZP_05912133.1| Fmu (Sun) domain protein [Brevibacterium linens BL2] Length = 492 Score = 55.1 bits (132), Expect = 3e-06, Method: Composition-based stats. Identities = 18/94 (19%), Positives = 38/94 (40%), Gaps = 4/94 (4%) Query: 61 YLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHS 120 D + + +G + +++ D +I+ +D + +R G +++ Sbjct: 80 MEPQDAAFTTELTYGALRQQEFYDAIIARA--ANRPIDSIDAEPLAGMRLGAHQILSMR- 136 Query: 121 VPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVS 154 VP +SE V + F+NAVL ++S Sbjct: 137 VPDHAALSETVAVIKT-NAPKTAGFVNAVLRRIS 169 >gi|256960468|ref|ZP_05564639.1| fmu [Enterococcus faecalis Merz96] gi|293385126|ref|ZP_06630952.1| ribosomal RNA small subunit methyltransferase B [Enterococcus faecalis R712] gi|293389099|ref|ZP_06633571.1| ribosomal RNA small subunit methyltransferase B [Enterococcus faecalis S613] gi|312906690|ref|ZP_07765690.1| ribosomal RNA small subunit methyltransferase B [Enterococcus faecalis DAPTO 512] gi|312910848|ref|ZP_07769684.1| ribosomal RNA small subunit methyltransferase B [Enterococcus faecalis DAPTO 516] gi|256950964|gb|EEU67596.1| fmu [Enterococcus faecalis Merz96] gi|291077603|gb|EFE14967.1| ribosomal RNA small subunit methyltransferase B [Enterococcus faecalis R712] gi|291081567|gb|EFE18530.1| ribosomal RNA small subunit methyltransferase B [Enterococcus faecalis S613] gi|310627338|gb|EFQ10621.1| ribosomal RNA small subunit methyltransferase B [Enterococcus faecalis DAPTO 512] gi|311288871|gb|EFQ67427.1| ribosomal RNA small subunit methyltransferase B [Enterococcus faecalis DAPTO 516] Length = 459 Score = 55.1 bits (132), Expect = 3e-06, Method: Composition-based stats. Identities = 23/104 (22%), Positives = 45/104 (43%), Gaps = 3/104 (2%) Query: 53 TELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGV 112 E+ +S D F +++G + RK ++ ++ + + R+D + ++L + Sbjct: 36 NEMMTKSELSEKDGRLFTELVYGTISRKLLLEYYLTPFVKK---PQRVDNWVKNLLILSL 92 Query: 113 LELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRK 156 +L+ VP +I+E V I KF+N VL R Sbjct: 93 YQLLYLDKVPDHAVINEAVEIGKRRGNPGIGKFVNGVLRAFQRN 136 >gi|116072280|ref|ZP_01469547.1| Fmu, rRNA SAM-dependent methyltransferase [Synechococcus sp. BL107] gi|116064802|gb|EAU70561.1| Fmu, rRNA SAM-dependent methyltransferase [Synechococcus sp. BL107] Length = 445 Score = 55.1 bits (132), Expect = 3e-06, Method: Composition-based stats. Identities = 19/111 (17%), Positives = 40/111 (36%), Gaps = 18/111 (16%) Query: 65 DLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMI--------LCSILRAGVLELI 116 D + +G + +++ +D W R+ + L +L G+ +L+ Sbjct: 45 DRGLATELAYGAIRQRRILD---------GW-LDRMGKVPAAKQPPKLRWLLHVGLYQLL 94 Query: 117 ECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRSGCVSA 167 +P ++ V +A +N +L V R E + +SA Sbjct: 95 MMERIPSAAAVNTTVELAKVSGLARLAPVVNGLLRGVLRAHESGETLELSA 145 >gi|114799841|ref|YP_762041.1| putative ribosomal RNA small subunit methyltransferase B [Hyphomonas neptunium ATCC 15444] gi|114740015|gb|ABI78140.1| putative ribosomal RNA small subunit methyltransferase B [Hyphomonas neptunium ATCC 15444] Length = 423 Score = 55.1 bits (132), Expect = 3e-06, Method: Composition-based stats. Identities = 24/103 (23%), Positives = 40/103 (38%), Gaps = 4/103 (3%) Query: 56 DVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLEL 115 D + D + R I + ID +S L+ S + +++RAG ++ Sbjct: 32 DAYNNLDGSDRAFARAIASSALRHLGWIDRGVSPFLSR--PLSATGAEIRALIRAGAAQI 89 Query: 116 IECHSVPVEVIISEYVCIAHDFFYGDE-PKFINAVLDKVSRKE 157 VP +SE V A + F+NA L +V+ E Sbjct: 90 WFM-DVPHHAAVSETVEAARLWSPARSGGGFLNAALRRVTESE 131 >gi|325973210|ref|YP_004250274.1| transcription antitermination factor NusB [Mycoplasma suis str. Illinois] gi|325989654|ref|YP_004249353.1| transcription termination factor N-utilization substance protein B [Mycoplasma suis KI3806] gi|323574739|emb|CBZ40395.1| Transcription termination factor N-utilization substance protein B [Mycoplasma suis] gi|323651812|gb|ADX97894.1| transcription antitermination factor NusB [Mycoplasma suis str. Illinois] Length = 145 Score = 55.1 bits (132), Expect = 4e-06, Method: Composition-based stats. Identities = 30/124 (24%), Positives = 51/124 (41%), Gaps = 4/124 (3%) Query: 38 TEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSF 97 I S+ ++ D EW I + K I++ L + W Sbjct: 22 EAIYSDLIWSELNESRKIGEVGKNFWSDFEW--RIFKKYIKNKDSFIEQINNLLRDDWDV 79 Query: 98 SRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKE 157 RL++ + +IL E + P V+I + V IA D+ DE K ++AV+D +K Sbjct: 80 GRLNLSILAILLEAFSEYSVYKTTP-AVLIQQSVQIAKDYG-EDEYKLVHAVIDNYIKKL 137 Query: 158 EIKR 161 +I+ Sbjct: 138 QIQE 141 >gi|288957078|ref|YP_003447419.1| Sun protein [Azospirillum sp. B510] gi|288909386|dbj|BAI70875.1| Sun protein [Azospirillum sp. B510] Length = 431 Score = 54.7 bits (131), Expect = 4e-06, Method: Composition-based stats. Identities = 27/140 (19%), Positives = 55/140 (39%), Gaps = 17/140 (12%) Query: 18 IARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVM 77 AR A+ L +++ + + D ++ S+ D + R+++ V+ Sbjct: 7 AARGVALDLL----------RDVLRKSVPFDDAFDAHPELASLQPR-DRGFVRLLVATVL 55 Query: 78 DRKQHIDLLISSCLTE-KWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHD 136 R ID +I + L + + + + LR G +L+ + P + V +A Sbjct: 56 RRLGQIDEMIQASLAKPGLPKAAIHDM----LRLGTAQLVF-LNTPAHAAVDTAVELAAA 110 Query: 137 FFYGDEPKFINAVLDKVSRK 156 INAVL ++ R+ Sbjct: 111 RNAAPYKGLINAVLRRIGRE 130 >gi|157959859|ref|YP_001499893.1| sun protein [Shewanella pealeana ATCC 700345] gi|157844859|gb|ABV85358.1| sun protein [Shewanella pealeana ATCC 700345] Length = 426 Score = 54.7 bits (131), Expect = 4e-06, Method: Composition-based stats. Identities = 26/139 (18%), Positives = 54/139 (38%), Gaps = 15/139 (10%) Query: 20 RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79 R A + ++Q+ G S + + + + + + D + +GVM Sbjct: 4 RALAAKVVFQVLEKGISLSVALPDQQRH------------LDSGKDKALLAELCYGVMRH 51 Query: 80 KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139 +D +S C++++ + I+ +L G +L +P ISE + Sbjct: 52 LPQLDKQVSDCMSKQMKGKQ--RIVHQLLLIGCYQL-YFTRIPSHAAISETAEACRQLKF 108 Query: 140 GDEPKFINAVLDKVSRKEE 158 K +N VL + R+E+ Sbjct: 109 EGLVKVVNGVLRNIQRQEK 127 >gi|296117963|ref|ZP_06836546.1| sun protein [Corynebacterium ammoniagenes DSM 20306] gi|295969194|gb|EFG82436.1| sun protein [Corynebacterium ammoniagenes DSM 20306] Length = 426 Score = 54.7 bits (131), Expect = 4e-06, Method: Composition-based stats. Identities = 16/111 (14%), Positives = 41/111 (36%), Gaps = 9/111 (8%) Query: 65 DLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVE 124 D + + +G + + +D +I + L + + LR G +L+ P Sbjct: 25 DAAFATELAYGTLRAEGVLDAIIGEHSSRG--LDTLAIEVLDALRVGTYQLMYTRVEPHA 82 Query: 125 VIISEYVCIAHDFFYGDEPKFINAVLDKVSRKE------EIKRSGCVSAIT 169 + V + + F+N ++ ++R ++ +G + A+ Sbjct: 83 -AVDTTVRLVQAAGHEKAKGFVNGIMRSITRANPETLLDKLTPAGEIEALA 132 >gi|78212348|ref|YP_381127.1| sun protein [Synechococcus sp. CC9605] gi|78196807|gb|ABB34572.1| sun protein [Synechococcus sp. CC9605] Length = 445 Score = 54.7 bits (131), Expect = 4e-06, Method: Composition-based stats. Identities = 23/152 (15%), Positives = 47/152 (30%), Gaps = 31/152 (20%) Query: 20 RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79 R A D++ ++ R + +L D + +G + + Sbjct: 15 RRLA------WDVLQAVAAGAYADVALERVLRERDLKPS------DRGLVTELAYGAIRQ 62 Query: 80 KQHIDLLISSCLTEKWSFSRLDMI--------LCSILRAGVLELIECHSVPVEVIISEYV 131 ++ +D W RL + L +L G+ +L+ +P ++ V Sbjct: 63 RRTLDA---------W-LDRLGKVPALKQPPKLRWLLHVGLYQLLLMERIPDSAAVNTAV 112 Query: 132 CIAHDF-FYGDEPKFINAVLDKVSRKEEIKRS 162 +A +N VL R E + Sbjct: 113 ELAKTSKGLARLAPVVNGVLRAALRAREAGET 144 >gi|119961729|ref|YP_947575.1| ribosomal RNA small subunit methyltransferase B [Arthrobacter aurescens TC1] gi|119948588|gb|ABM07499.1| ribosomal RNA small subunit methyltransferase B [Arthrobacter aurescens TC1] Length = 516 Score = 54.7 bits (131), Expect = 4e-06, Method: Composition-based stats. Identities = 30/148 (20%), Positives = 54/148 (36%), Gaps = 14/148 (9%) Query: 6 NKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVD 65 N + + R ARL A + L ++ + + + LD D Sbjct: 48 NNAPSQRTRRADPARLVAFEVL-----RAVASEDAYANLVLPARIREHRLD------RRD 96 Query: 66 LEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEV 125 + + +G + + D +++ C+ +LD + LR G +L+ VP Sbjct: 97 AGFATELSYGALRGQGTYDAILARCVDR--PLEQLDPAILDALRIGAHQLLSMR-VPAHA 153 Query: 126 IISEYVCIAHDFFYGDEPKFINAVLDKV 153 + + V +A INAVL KV Sbjct: 154 ALDQTVGLARAVIGAGPSALINAVLRKV 181 >gi|114561210|ref|YP_748723.1| sun protein [Shewanella frigidimarina NCIMB 400] gi|114332503|gb|ABI69885.1| sun protein [Shewanella frigidimarina NCIMB 400] Length = 427 Score = 54.7 bits (131), Expect = 4e-06, Method: Composition-based stats. Identities = 29/138 (21%), Positives = 53/138 (38%), Gaps = 15/138 (10%) Query: 20 RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79 R A +A+Y++ G S + + + + + + D + +GVM + Sbjct: 4 RALAAKAIYEVLEKGISLSVALPDQQQH------------LQNGKDKALLAELCYGVMRQ 51 Query: 80 KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139 +D +S CL + F IL +L G +L +P ISE + Sbjct: 52 LPQLDKCVSDCLAK--PFKGKQRILHQLLIVGCYQL-YFTRIPAHAAISETAEACRQLRF 108 Query: 140 GDEPKFINAVLDKVSRKE 157 K +N VL + R++ Sbjct: 109 DGLVKVVNGVLRNIQRQD 126 >gi|322418095|ref|YP_004197318.1| sun protein [Geobacter sp. M18] gi|320124482|gb|ADW12042.1| sun protein [Geobacter sp. M18] Length = 479 Score = 54.7 bits (131), Expect = 4e-06, Method: Composition-based stats. Identities = 31/139 (22%), Positives = 54/139 (38%), Gaps = 14/139 (10%) Query: 20 RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79 R AA L I E D EL + + D +++GV+ R Sbjct: 37 RRAAFDIL----------LRIEKEKSFADILIDHELSKD-MIKGADRGLLTELVYGVLRR 85 Query: 80 KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139 + +D +I + +L++ + +LR G+ + VPV ++E V +A + Sbjct: 86 QGTLDHIIGQFSKQ--RTDKLELYVLLLLRLGLYQCFFLDRVPVSAAVNETVKLAKEL-A 142 Query: 140 GDEPKFINAVLDKVSRKEE 158 FINA+L R + Sbjct: 143 PRASGFINAILRNADRNRD 161 >gi|116073315|ref|ZP_01470577.1| Fmu, rRNA SAM-dependent methyltransferase [Synechococcus sp. RS9916] gi|116068620|gb|EAU74372.1| Fmu, rRNA SAM-dependent methyltransferase [Synechococcus sp. RS9916] Length = 456 Score = 54.7 bits (131), Expect = 4e-06, Method: Composition-based stats. Identities = 17/106 (16%), Positives = 36/106 (33%), Gaps = 18/106 (16%) Query: 65 DLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMI--------LCSILRAGVLELI 116 D + +G + +++ +D W RL + L +L G+ +L+ Sbjct: 59 DRGLVTELAYGAIRQRRWLD---------GW-LDRLGKVPARKQPPRLRWLLHVGLYQLL 108 Query: 117 ECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRS 162 +P ++ V +A +N +L R +E Sbjct: 109 CMERIPAAAAVNTSVELAKRHGLNRLAPVVNGLLRGALRAQEAGEQ 154 >gi|184200812|ref|YP_001855019.1| putative rRNA (cytosine-C(5)-)-methyltransferase [Kocuria rhizophila DC2201] gi|183581042|dbj|BAG29513.1| putative rRNA methyltransferase [Kocuria rhizophila DC2201] Length = 553 Score = 54.7 bits (131), Expect = 5e-06, Method: Composition-based stats. Identities = 32/152 (21%), Positives = 55/152 (36%), Gaps = 17/152 (11%) Query: 12 LSHRRGI---ARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEW 68 RR ARLAA +AL ++ + + LD D + Sbjct: 82 PGQRRRQSDPARLAAFRAL-----RAVTSEDAYGNLVLPGLVRELRLD------RRDAAF 130 Query: 69 FRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIIS 128 + +G M D +++ C+ +LD + LR G +L+ VP + Sbjct: 131 ATELGYGAMRFSGTWDAVLAECVDR--PLEQLDPAVLDALRLGTHQLLAMR-VPDHAALD 187 Query: 129 EYVCIAHDFFYGDEPKFINAVLDKVSRKEEIK 160 V + +NAVL KV+R+ + + Sbjct: 188 ATVGLVRGEIGQGPAGLVNAVLRKVARRSQEE 219 >gi|152977800|ref|YP_001343429.1| sun protein [Actinobacillus succinogenes 130Z] gi|150839523|gb|ABR73494.1| sun protein [Actinobacillus succinogenes 130Z] Length = 462 Score = 54.3 bits (130), Expect = 5e-06, Method: Composition-based stats. Identities = 27/139 (19%), Positives = 53/139 (38%), Gaps = 16/139 (11%) Query: 20 RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79 R AA Q + Q+ G S + +I E + DL + I G+ Sbjct: 29 RAAAAQIILQVLDQGKSLSALIPE-------------TQLKLKPQDLPLLQEICFGICRV 75 Query: 80 KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139 ++ +I + + I+ +L G+ +++ +P I+E V A + Sbjct: 76 LPRLEWIIRLLMDK--PLKGKTRIVHCLLLVGLYQILYTR-IPQHAAINETVNAAKELKS 132 Query: 140 GDEPKFINAVLDKVSRKEE 158 + +N VL + R++E Sbjct: 133 DNFRGLLNGVLRRFLREQE 151 >gi|306821088|ref|ZP_07454704.1| sun family protein [Eubacterium yurii subsp. margaretiae ATCC 43715] gi|304550781|gb|EFM38756.1| sun family protein [Eubacterium yurii subsp. margaretiae ATCC 43715] Length = 436 Score = 54.3 bits (130), Expect = 5e-06, Method: Composition-based stats. Identities = 24/102 (23%), Positives = 41/102 (40%), Gaps = 3/102 (2%) Query: 53 TELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGV 112 E+ +S + + + +GV+ +D I SFS++ IL + Sbjct: 26 NEVFTKSKLKDEEKNFITYLSYGVLGNIYFLDYFIRKY--SDISFSKISNKAKVILEMAL 83 Query: 113 LELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVS 154 ELI +S ++E V + F+NAVL K+S Sbjct: 84 FELIFMNSSQNYATVNESVALCKK-VDFRAKNFVNAVLRKIS 124 >gi|294138832|ref|YP_003554810.1| ribosomal RNA small subunit methyltransferase B [Shewanella violacea DSS12] gi|293325301|dbj|BAJ00032.1| ribosomal RNA small subunit methyltransferase B [Shewanella violacea DSS12] Length = 425 Score = 54.3 bits (130), Expect = 5e-06, Method: Composition-based stats. Identities = 27/139 (19%), Positives = 52/139 (37%), Gaps = 15/139 (10%) Query: 20 RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79 R A + +Q+ G S + + + + + + D + +GVM Sbjct: 4 RALAAKVAFQVLEKGISLSVALPDQQKH------------LESGKDKALLAELSYGVMRH 51 Query: 80 KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139 +D L+S C+++ I+ +L G +L +P ISE + Sbjct: 52 LPQLDKLVSDCMSK--PLKGKQRIVHQLLLIGCYQL-YFTRIPSHAAISETAEACRQLKF 108 Query: 140 GDEPKFINAVLDKVSRKEE 158 K +N VL + R+E+ Sbjct: 109 EGLVKVVNGVLRNIQRQEK 127 >gi|146278958|ref|YP_001169117.1| Fmu (Sun) domain-containing protein [Rhodobacter sphaeroides ATCC 17025] gi|145557199|gb|ABP71812.1| Fmu (Sun) domain protein [Rhodobacter sphaeroides ATCC 17025] Length = 422 Score = 54.3 bits (130), Expect = 5e-06, Method: Composition-based stats. Identities = 24/152 (15%), Positives = 47/152 (30%), Gaps = 27/152 (17%) Query: 12 LSHRRGIARLAAVQALYQIDIIGCSTTEI-------ISEYETYRFCADTELDVESVYLHV 64 + +RR A + G E + R + Sbjct: 1 MIYRRRAA-----------EQGGGMADEARGMAVALLDAVLGERRLLSQAVGELPSAGPA 49 Query: 65 DLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVE 124 + + + + D L+S L + + +ILR V+E+ + P Sbjct: 50 ERARAQRLALTALRHLDPADRLLSPHLRKAPPL-----TVRNILRLAVVEMAVEGAAPHG 104 Query: 125 VIISEYVCIAHDFFYGDEP--KFINAVLDKVS 154 V+ + V +A + +NAVL K++ Sbjct: 105 VV-NAAVDLARR-GRRTQHLAGLVNAVLRKIA 134 >gi|297198310|ref|ZP_06915707.1| ribosomal RNA small subunit methyltransferase B [Streptomyces sviceus ATCC 29083] gi|297147058|gb|EDY59597.2| ribosomal RNA small subunit methyltransferase B [Streptomyces sviceus ATCC 29083] Length = 399 Score = 54.3 bits (130), Expect = 6e-06, Method: Composition-based stats. Identities = 20/81 (24%), Positives = 37/81 (45%), Gaps = 3/81 (3%) Query: 77 MDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHD 136 M R+ D +I+ C+ +D + +L G +L+ +P +S V +A Sbjct: 1 MRRQGTYDAIIAECVDR--PLREVDPPVLDVLSLGAHQLLGTR-IPTHAAVSASVELARV 57 Query: 137 FFYGDEPKFINAVLDKVSRKE 157 KF+NAVL K+++ + Sbjct: 58 VLGDGRAKFVNAVLRKIAQDD 78 >gi|326793335|ref|YP_004311155.1| sun protein [Marinomonas mediterranea MMB-1] gi|326544099|gb|ADZ89319.1| sun protein [Marinomonas mediterranea MMB-1] Length = 452 Score = 54.3 bits (130), Expect = 6e-06, Method: Composition-based stats. Identities = 32/139 (23%), Positives = 49/139 (35%), Gaps = 18/139 (12%) Query: 19 ARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDL-EWFRVIIHGVM 77 AR AAV E+I++ + T+L + D + GV Sbjct: 13 AREAAV--------------EVITQVLLQQGSLSTQLSKIQGKVDFDHHALLKEFCFGVC 58 Query: 78 DRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDF 137 ++ + S L + F D + S L G+ +L S P I+E V + Sbjct: 59 RHFPTLNSIALSLLAK--PFEERDYDVYSTLLLGLYQLQHM-STPDHAAINESVELCRTL 115 Query: 138 FYGDEPKFINAVLDKVSRK 156 K INAVL + R Sbjct: 116 KKDWATKLINAVLRRYQRD 134 >gi|227503566|ref|ZP_03933615.1| possible rRNA SAM-dependent methyltransferase RmsB [Corynebacterium accolens ATCC 49725] gi|227075602|gb|EEI13565.1| possible rRNA SAM-dependent methyltransferase RmsB [Corynebacterium accolens ATCC 49725] Length = 484 Score = 54.3 bits (130), Expect = 6e-06, Method: Composition-based stats. Identities = 26/162 (16%), Positives = 55/162 (33%), Gaps = 16/162 (9%) Query: 3 IQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYL 62 + N+ D + A VQA ID G ++ ++ R ++ + V Sbjct: 12 NRGNRGDRNAGTKNTGAGKTLVQA--AIDQ-GVDPARAVA-FDVVRRVSEEDAFANLVLP 67 Query: 63 HV---------DLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVL 113 D + I +G + +D +I+ C + + + ++ LR G Sbjct: 68 KALRKQKLTGRDAAFATEITYGTLRTLGVLDAVIAQCSSRE--LEAISPVVIDALRLGTY 125 Query: 114 ELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSR 155 +++ P + V + F N +L ++R Sbjct: 126 QVLYTRVEPHA-AVDTSVRLVVAGGEEKAKGFANGILRTITR 166 >gi|33866211|ref|NP_897770.1| Sun protein (Fmu protein) [Synechococcus sp. WH 8102] gi|33639186|emb|CAE08194.1| Sun protein (Fmu protein) [Synechococcus sp. WH 8102] Length = 441 Score = 54.0 bits (129), Expect = 6e-06, Method: Composition-based stats. Identities = 17/109 (15%), Positives = 36/109 (33%), Gaps = 12/109 (11%) Query: 58 ESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLD-----MILCSILRAGV 112 E D + +G + R++ +D + R+ L +L G+ Sbjct: 38 EHPLAGADRGLATELAYGAIRRRRPLDAWLDR-------LGRIPASKQPPKLRWLLHVGL 90 Query: 113 LELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKR 161 +L+ +P ++ V +A +N +L R E + Sbjct: 91 YQLLWMERIPASAAVNTTVDLAKAVGLARLAPVVNGMLRSALRARESGQ 139 >gi|327400017|ref|YP_004340856.1| Fmu (Sun) domain-containing protein [Archaeoglobus veneficus SNP6] gi|327315525|gb|AEA46141.1| Fmu (Sun) domain protein [Archaeoglobus veneficus SNP6] Length = 440 Score = 54.0 bits (129), Expect = 7e-06, Method: Composition-based stats. Identities = 26/128 (20%), Positives = 44/128 (34%), Gaps = 9/128 (7%) Query: 33 IGCSTTEIISEYETYRFCADTELDVESVYLHVDLEW-----FRVIIHGVMDRKQHIDLLI 87 EI+ + A L ++ D ++ + + R+ ID LI Sbjct: 4 TQEIAVEILERIDEEIISAKEAL--KAGLAGKDFDYKVRGSIHAYVMETLKRRNTIDFLI 61 Query: 88 SSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFIN 147 L K + L L ++LR V E+ V + V IA G +N Sbjct: 62 DRSLDGK-TVYELKPFLRNLLRVAVYEMFY-KGVHPALATDSAVRIAKRRIGGRAAALVN 119 Query: 148 AVLDKVSR 155 AV+ + + Sbjct: 120 AVMRRAEK 127 >gi|116670233|ref|YP_831166.1| Fmu (Sun) domain-containing protein [Arthrobacter sp. FB24] gi|116610342|gb|ABK03066.1| Fmu (Sun) domain protein [Arthrobacter sp. FB24] Length = 539 Score = 54.0 bits (129), Expect = 7e-06, Method: Composition-based stats. Identities = 33/155 (21%), Positives = 56/155 (36%), Gaps = 17/155 (10%) Query: 3 IQDNKKDLKLSHR-RGI--ARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVES 59 + N + S R R ARL A + L ++ + + LD Sbjct: 50 PKRNFSENAPSQRTRRADPARLVAFEVL-----RAVASEDAYANLVLPARIRHHGLD--- 101 Query: 60 VYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECH 119 D + + +G + + D +++ C+ +LD + LR G +L+ Sbjct: 102 ---KRDAGFATELSYGALRGQGTYDAVLARCVDR--PLDQLDPAILDALRIGAHQLLAMR 156 Query: 120 SVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVS 154 VP + + V +A INAVL KVS Sbjct: 157 -VPAHAALDQTVGLARAVIGAGPSALINAVLRKVS 190 >gi|213965561|ref|ZP_03393755.1| Fmu protein [Corynebacterium amycolatum SK46] gi|213951720|gb|EEB63108.1| Fmu protein [Corynebacterium amycolatum SK46] Length = 485 Score = 54.0 bits (129), Expect = 7e-06, Method: Composition-based stats. Identities = 27/142 (19%), Positives = 52/142 (36%), Gaps = 16/142 (11%) Query: 20 RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79 R A++ L + E + Y +L D + + +G + Sbjct: 45 RKVALKVL-----------ADVRENDAYANLLLPKLLKAHKLKGRDAAFATELTYGTLRA 93 Query: 80 KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV-CIAHDFF 138 + +D +I + + S + + +LR G +L+ V + V +A Sbjct: 94 EGLLDAVIEASSSR--PLSDIAGPVMDVLRLGTYQLL-RTRVDAYAAVDTSVRSVAKVAG 150 Query: 139 YGDEPKFINAVLDKVSRKEEIK 160 G F+NA+L KVS + E + Sbjct: 151 PG-ARGFVNAILRKVSSQTESE 171 >gi|329946677|ref|ZP_08294089.1| putative ribosomal RNA small subunit methyltransferase B [Actinomyces sp. oral taxon 170 str. F0386] gi|328526488|gb|EGF53501.1| putative ribosomal RNA small subunit methyltransferase B [Actinomyces sp. oral taxon 170 str. F0386] Length = 463 Score = 54.0 bits (129), Expect = 7e-06, Method: Composition-based stats. Identities = 24/102 (23%), Positives = 44/102 (43%), Gaps = 3/102 (2%) Query: 53 TELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGV 112 EL + D + + +G + + D +ISSC + R+D + +LR G Sbjct: 21 PELLDSADLDRRDAGFTTALTYGTLRLQGRYDAMISSCTDR--TLERIDPTVLDVLRLGC 78 Query: 113 LELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVS 154 +L+ V +S V +A D F+NA++ ++S Sbjct: 79 HQLMGMR-VAQHAAVSTTVDLAADSCGRGAATFVNAIMRRLS 119 >gi|229820540|ref|YP_002882066.1| Fmu (Sun) domain protein [Beutenbergia cavernae DSM 12333] gi|229566453|gb|ACQ80304.1| Fmu (Sun) domain protein [Beutenbergia cavernae DSM 12333] Length = 480 Score = 54.0 bits (129), Expect = 8e-06, Method: Composition-based stats. Identities = 25/122 (20%), Positives = 43/122 (35%), Gaps = 3/122 (2%) Query: 36 STTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKW 95 + + Y L E D + + +G + + D +++ T Sbjct: 30 DVLRAVERDDAYANLVLPALLAERGLSGRDAAFATELAYGTLRMRGRYDAILAIASTR-- 87 Query: 96 SFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSR 155 LD L +LR G +L+ V +SE V +A + + NAVL + R Sbjct: 88 PPQELDPPLLDVLRLGAHQLLGMR-VAAHAAVSETVTLAREVVGAGASSYANAVLRAIGR 146 Query: 156 KE 157 E Sbjct: 147 AE 148 >gi|309776537|ref|ZP_07671518.1| ribosomal RNA small subunit methyltransferase B [Erysipelotrichaceae bacterium 3_1_53] gi|308915714|gb|EFP61473.1| ribosomal RNA small subunit methyltransferase B [Erysipelotrichaceae bacterium 3_1_53] Length = 415 Score = 54.0 bits (129), Expect = 8e-06, Method: Composition-based stats. Identities = 25/143 (17%), Positives = 49/143 (34%), Gaps = 11/143 (7%) Query: 30 IDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISS 89 ++ G + + + + + D I++G + + + Sbjct: 1 MNARGIAFDMLKDIFLHKTYSNLLLRKGLNQAKAQDKGLITQIVYGTLQNYR-----LCR 55 Query: 90 CLTEKWS--FSRLDMILCSI-LRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFI 146 +W +L I L V +L+ +P II++ V I + K + Sbjct: 56 Y---QWMDCVKKLPSDEVCIVLDMSVYQLLYMDKLPAYAIINDAVDITKKQIHVKMAKLV 112 Query: 147 NAVLDKVSRKEEIKRSGCVSAIT 169 NAVL V R+ E + +G I Sbjct: 113 NAVLHAVERRGEREVTGKQEEIL 135 >gi|260426788|ref|ZP_05780767.1| Fmu [Citreicella sp. SE45] gi|260421280|gb|EEX14531.1| Fmu [Citreicella sp. SE45] Length = 420 Score = 54.0 bits (129), Expect = 8e-06, Method: Composition-based stats. Identities = 26/142 (18%), Positives = 48/142 (33%), Gaps = 24/142 (16%) Query: 18 IARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVM 77 AR AVQ L Q+ G +E +S + + + V+ Sbjct: 6 TARGQAVQLLGQVLGQGRLLSEAMS------------GGAWDSLAPAERAAAQRLAQEVL 53 Query: 78 DRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDF 137 + D ++ L + + ++LR G EL C +++E V + Sbjct: 54 RNLERCDRVLKPHLRKAPPL-----FVKNVLRLGAWEL--CTGGAAHGVVNEAVQLVGA- 105 Query: 138 FYGDEP---KFINAVLDKVSRK 156 +NAVL K++ + Sbjct: 106 -DRKAHSMKGMVNAVLRKLAAE 126 >gi|312797048|ref|YP_004029970.1| N utilization substance protein B [Burkholderia rhizoxinica HKI 454] gi|312168823|emb|CBW75826.1| N utilization substance protein B [Burkholderia rhizoxinica HKI 454] Length = 112 Score = 53.6 bits (128), Expect = 8e-06, Method: Composition-based stats. Identities = 15/71 (21%), Positives = 27/71 (38%), Gaps = 11/71 (15%) Query: 21 LAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRK 80 A Q LYQ + G + EI D + + + D + F ++HGV+ + Sbjct: 12 ELATQGLYQWLLSGAAPGEI-----------DAAMREQPGFDKADRDHFDALLHGVIKQA 60 Query: 81 QHIDLLISSCL 91 + + L Sbjct: 61 ATLTEALMPFL 71 >gi|257080479|ref|ZP_05574840.1| ribosomal RNA small subunit methyltransferase [Enterococcus faecalis E1Sol] gi|256988509|gb|EEU75811.1| ribosomal RNA small subunit methyltransferase [Enterococcus faecalis E1Sol] Length = 459 Score = 53.6 bits (128), Expect = 8e-06, Method: Composition-based stats. Identities = 22/104 (21%), Positives = 45/104 (43%), Gaps = 3/104 (2%) Query: 53 TELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGV 112 E+ +S D F +++G + RK ++ ++ + + ++D + ++L + Sbjct: 36 NEMMTKSELSEKDGRLFTELVYGTISRKLLLEYYLTPFVKK---PQKIDNWVKNLLILSL 92 Query: 113 LELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRK 156 +L+ VP +I+E V I KF+N VL R Sbjct: 93 YQLLYLDKVPDHAVINEAVEIGKRRGNPGIGKFVNGVLRAFQRN 136 >gi|163751682|ref|ZP_02158901.1| sun protein [Shewanella benthica KT99] gi|161328421|gb|EDP99577.1| sun protein [Shewanella benthica KT99] Length = 425 Score = 53.6 bits (128), Expect = 8e-06, Method: Composition-based stats. Identities = 29/143 (20%), Positives = 52/143 (36%), Gaps = 19/143 (13%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 R +A A Q L G S + + + + + + D + +G Sbjct: 4 RALAARVAFQVL----EKGTSLSVALPDQQQH------------LESGKDKALLAELSYG 47 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135 VM +D L+S C+++ I+ +L G +L +P ISE Sbjct: 48 VMRHLPQLDKLVSDCMSK--PLKGKQRIVHQLLLIGCYQL-YFTRIPSHAAISETAEACR 104 Query: 136 DFFYGDEPKFINAVLDKVSRKEE 158 + K +N VL + R+E+ Sbjct: 105 QLKFEGLVKVVNGVLRNIQRQEK 127 >gi|126695788|ref|YP_001090674.1| Sun protein (Fmu protein) [Prochlorococcus marinus str. MIT 9301] gi|126542831|gb|ABO17073.1| Sun protein (Fmu protein) [Prochlorococcus marinus str. MIT 9301] Length = 438 Score = 53.6 bits (128), Expect = 9e-06, Method: Composition-based stats. Identities = 23/100 (23%), Positives = 43/100 (43%), Gaps = 2/100 (2%) Query: 61 YLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHS 120 + +D+ + + G + ++ +DL T K + + L +L G+ +L++ Sbjct: 37 FNPLDIAFITELSFGCIRYRKFLDLWTDH--TSKITHKKQPPKLRWLLHIGLYQLLKMDK 94 Query: 121 VPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIK 160 +P IS V +A +NA+L SRK E K Sbjct: 95 IPFPAAISTTVEVAKKTDLNGLAGTVNAILRNASRKLEQK 134 >gi|78778810|ref|YP_396922.1| sun protein [Prochlorococcus marinus str. MIT 9312] gi|78712309|gb|ABB49486.1| sun protein [Prochlorococcus marinus str. MIT 9312] Length = 438 Score = 53.6 bits (128), Expect = 9e-06, Method: Composition-based stats. Identities = 23/100 (23%), Positives = 43/100 (43%), Gaps = 2/100 (2%) Query: 61 YLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHS 120 + +D+ + + G + ++ +DL T K + + L +L G+ +L++ Sbjct: 37 FNPLDIAFITELSFGCIRYRKFLDLWTDH--TSKITHKKQPPKLRWLLHIGLYQLLKMDK 94 Query: 121 VPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIK 160 +P IS V +A +NA+L SRK E K Sbjct: 95 IPFPAAISTTVEVAKKTDLNGLAGTVNAILRNASRKLEQK 134 >gi|306836175|ref|ZP_07469159.1| exopolyphosphatase [Corynebacterium accolens ATCC 49726] gi|304567896|gb|EFM43477.1| exopolyphosphatase [Corynebacterium accolens ATCC 49726] Length = 484 Score = 53.6 bits (128), Expect = 9e-06, Method: Composition-based stats. Identities = 17/115 (14%), Positives = 41/115 (35%), Gaps = 3/115 (2%) Query: 41 ISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRL 100 +SE + + + + D + I +G + +D +I+ C + + + Sbjct: 55 VSEEDAFANLVLPKALRKQKLSGRDAAFATEITYGTLRTLGVLDAVIAQCSSRE--LEAI 112 Query: 101 DMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSR 155 ++ LR G +++ P + V + F N +L ++R Sbjct: 113 SPVVIDALRLGTYQVLYTRVEPHA-AVDTSVRLVVAGGEEKAKGFANGILRTITR 166 >gi|256958399|ref|ZP_05562570.1| fmu family protein [Enterococcus faecalis DS5] gi|257078290|ref|ZP_05572651.1| fmu [Enterococcus faecalis JH1] gi|294779981|ref|ZP_06745361.1| ribosomal RNA small subunit methyltransferase B [Enterococcus faecalis PC1.1] gi|307270563|ref|ZP_07551861.1| ribosomal RNA small subunit methyltransferase B [Enterococcus faecalis TX4248] gi|256948895|gb|EEU65527.1| fmu family protein [Enterococcus faecalis DS5] gi|256986320|gb|EEU73622.1| fmu [Enterococcus faecalis JH1] gi|294452962|gb|EFG21384.1| ribosomal RNA small subunit methyltransferase B [Enterococcus faecalis PC1.1] gi|306513144|gb|EFM81778.1| ribosomal RNA small subunit methyltransferase B [Enterococcus faecalis TX4248] gi|315034823|gb|EFT46755.1| ribosomal RNA small subunit methyltransferase B [Enterococcus faecalis TX0027] Length = 459 Score = 53.6 bits (128), Expect = 9e-06, Method: Composition-based stats. Identities = 22/104 (21%), Positives = 45/104 (43%), Gaps = 3/104 (2%) Query: 53 TELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGV 112 E+ +S D F +++G + RK ++ ++ + + ++D + ++L + Sbjct: 36 NEMMTKSELSEKDGRLFTELVYGTISRKLLLEYYLTPFVKK---PQKVDNWVRNLLILSL 92 Query: 113 LELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRK 156 +L+ VP +I+E V I KF+N VL R Sbjct: 93 YQLLYLDKVPDHAVINEAVEIGKRRGNPGIGKFVNGVLRAFQRN 136 >gi|257417249|ref|ZP_05594243.1| fmu family protein [Enterococcus faecalis AR01/DG] gi|307292139|ref|ZP_07572005.1| ribosomal RNA small subunit methyltransferase B [Enterococcus faecalis TX0411] gi|257159077|gb|EEU89037.1| fmu family protein [Enterococcus faecalis ARO1/DG] gi|306496792|gb|EFM66343.1| ribosomal RNA small subunit methyltransferase B [Enterococcus faecalis TX0411] gi|315146584|gb|EFT90600.1| ribosomal RNA small subunit methyltransferase B [Enterococcus faecalis TX4244] Length = 459 Score = 53.6 bits (128), Expect = 9e-06, Method: Composition-based stats. Identities = 22/104 (21%), Positives = 45/104 (43%), Gaps = 3/104 (2%) Query: 53 TELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGV 112 E+ +S D F +++G + RK ++ ++ + + ++D + ++L + Sbjct: 36 NEMMTKSELSEKDGRLFTELVYGTISRKLLLEYYLTPFVKK---PQKVDNWVRNLLILSL 92 Query: 113 LELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRK 156 +L+ VP +I+E V I KF+N VL R Sbjct: 93 YQLLYLDKVPDHAVINEAVEIGKRRGNPGIGKFVNGVLRAFQRN 136 >gi|325108338|ref|YP_004269406.1| Fmu (Sun) domain protein [Planctomyces brasiliensis DSM 5305] gi|324968606|gb|ADY59384.1| Fmu (Sun) domain protein [Planctomyces brasiliensis DSM 5305] Length = 495 Score = 53.6 bits (128), Expect = 9e-06, Method: Composition-based stats. Identities = 22/89 (24%), Positives = 37/89 (41%), Gaps = 2/89 (2%) Query: 79 RKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFF 138 R++ ID ++ ++ + L ++LR G EL+ ISE V +A Sbjct: 71 RQRTIDRVLREAVSRAR--ENVQNELWTLLRMGAAELLFGPRDAQYAAISETVELARWVG 128 Query: 139 YGDEPKFINAVLDKVSRKEEIKRSGCVSA 167 + + F+N VL V R + S V Sbjct: 129 HSEWTGFLNGVLRGVQRMLSEEESDTVGK 157 >gi|313898375|ref|ZP_07831912.1| ribosomal RNA small subunit methyltransferase B [Clostridium sp. HGF2] gi|312956757|gb|EFR38388.1| ribosomal RNA small subunit methyltransferase B [Clostridium sp. HGF2] Length = 415 Score = 53.6 bits (128), Expect = 1e-05, Method: Composition-based stats. Identities = 22/103 (21%), Positives = 41/103 (39%), Gaps = 11/103 (10%) Query: 65 DLEWFRVIIHGVMDRKQHIDLLISSCLTEKWS--FSRLDMILCSILR-AGVLELIECHSV 121 D I++G + + + +W +L +L V +L + Sbjct: 36 DKGLITQIVYGTLQNYR-----LCRY---QWEDCVKKLPSDEVCVLLDMSVYQLFYMDKL 87 Query: 122 PVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRSGC 164 P II++ V I +G+ K +NAVL V R+ + + +G Sbjct: 88 PAYAIINDAVEITKKQIHGNMAKLVNAVLHAVQRRGKREITGK 130 >gi|83950714|ref|ZP_00959447.1| ribosomal RNA small subunit methyltransferase B, putative [Roseovarius nubinhibens ISM] gi|83838613|gb|EAP77909.1| ribosomal RNA small subunit methyltransferase B, putative [Roseovarius nubinhibens ISM] Length = 410 Score = 53.6 bits (128), Expect = 1e-05, Method: Composition-based stats. Identities = 23/107 (21%), Positives = 40/107 (37%), Gaps = 14/107 (13%) Query: 59 SVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIEC 118 D + + + + D LIS + +K + +ILR +EL Sbjct: 22 DRLDPADRARAQRLTTQTLRAMERADRLISRHVKKKPPL-----TIRNILRLATVELAYG 76 Query: 119 HSVPVEVIISEYVCIAHDFFYGDEPKF---INAVLDKVSRKEEIKRS 162 ++ E V +A + + +NAVL K++ EE RS Sbjct: 77 GDAHG--VVGEAVTLAGE--GQRSQNYKGLVNAVLRKIA--EEAPRS 117 >gi|256379230|ref|YP_003102890.1| Fmu (Sun) domain protein [Actinosynnema mirum DSM 43827] gi|255923533|gb|ACU39044.1| Fmu (Sun) domain protein [Actinosynnema mirum DSM 43827] Length = 478 Score = 53.6 bits (128), Expect = 1e-05, Method: Composition-based stats. Identities = 27/141 (19%), Positives = 52/141 (36%), Gaps = 14/141 (9%) Query: 19 ARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMD 78 AR AA+ L +++ + Y L E D + +G Sbjct: 37 ARRAALDTL-----------RAVTKRDAYANLVLPGLLRERRITGRDAALATELTYGTAR 85 Query: 79 RKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFF 138 + +D ++++C + +D + LR G +L+ VP ++ V + Sbjct: 86 ARGLLDAVLAACSDR--PLAEIDDAVLDALRLGAYQLL-RTRVPAHAAVASTVDLVRADR 142 Query: 139 YGDEPKFINAVLDKVSRKEEI 159 F NAVL +V+ ++E Sbjct: 143 GSGAAGFANAVLRRVTGQDEA 163 >gi|260434429|ref|ZP_05788399.1| ribosomal RNA small subunit methyltransferase B [Synechococcus sp. WH 8109] gi|260412303|gb|EEX05599.1| ribosomal RNA small subunit methyltransferase B [Synechococcus sp. WH 8109] Length = 445 Score = 53.6 bits (128), Expect = 1e-05, Method: Composition-based stats. Identities = 23/152 (15%), Positives = 46/152 (30%), Gaps = 31/152 (20%) Query: 20 RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79 R A D++ ++ R +L D + +G + + Sbjct: 15 RRLA------WDVLQAVAAGAYADVALERVLRMQDLKPS------DRGLVTELAYGAIRQ 62 Query: 80 KQHIDLLISSCLTEKWSFSRLDMI--------LCSILRAGVLELIECHSVPVEVIISEYV 131 ++ +D W RL + L +L G+ +L+ +P ++ V Sbjct: 63 RRTLDA---------W-LDRLGKVPAAKQPPKLRWLLHVGLYQLLLMERIPDSAAVNTAV 112 Query: 132 CIAHDF-FYGDEPKFINAVLDKVSRKEEIKRS 162 +A +N VL R E + Sbjct: 113 ELAKTSKGLARLAPVVNGVLRAALRAREAGET 144 >gi|261416620|ref|YP_003250303.1| Fmu (Sun) domain protein [Fibrobacter succinogenes subsp. succinogenes S85] gi|261373076|gb|ACX75821.1| Fmu (Sun) domain protein [Fibrobacter succinogenes subsp. succinogenes S85] gi|302326268|gb|ADL25469.1| ribosomal RNA small subunit methyltransferase B [Fibrobacter succinogenes subsp. succinogenes S85] Length = 419 Score = 53.6 bits (128), Expect = 1e-05, Method: Composition-based stats. Identities = 25/116 (21%), Positives = 44/116 (37%), Gaps = 9/116 (7%) Query: 45 ETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMIL 104 E +R + D + + + GV R ++ LT+K L + Sbjct: 7 EAFRVLLLWQRDGSFIKESGLSPFAMELALGVCRRHLYL-EYFVKSLTKK-----LPSLE 60 Query: 105 -CSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDE-PKFINAVLDKVSRKEE 158 IL G+ ++ VP I++ V +A G+ + +NAVL R+ E Sbjct: 61 ARVILEMGLFQMFFM-DVPDYAAINDSVELAKSANLGESTARLVNAVLRTARRQGE 115 >gi|78484536|ref|YP_390461.1| sun protein [Thiomicrospira crunogena XCL-2] gi|78362822|gb|ABB40787.1| Ribosomal RNA small subunit methyltransferase B [Thiomicrospira crunogena XCL-2] Length = 436 Score = 53.2 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 16/94 (17%), Positives = 37/94 (39%), Gaps = 3/94 (3%) Query: 65 DLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVE 124 + + + ++ G + ++ + I S L +K D + ++ G+ +++ P Sbjct: 39 ERAFTQNLVLGTLRWQERL-EAIRSHLLKK-PLKAKDEDVNQLILLGLYQILYM-DTPEH 95 Query: 125 VIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEE 158 +SE V + IN VL R ++ Sbjct: 96 AAVSETVNLTKSLKKPWARGLINGVLRTFLRDKD 129 >gi|254526482|ref|ZP_05138534.1| ribosomal RNA small subunit methyltransferase B [Prochlorococcus marinus str. MIT 9202] gi|221537906|gb|EEE40359.1| ribosomal RNA small subunit methyltransferase B [Prochlorococcus marinus str. MIT 9202] Length = 438 Score = 53.2 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 23/100 (23%), Positives = 43/100 (43%), Gaps = 2/100 (2%) Query: 61 YLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHS 120 + +D+ + + G + ++ +DL T K + + L +L G+ +L++ Sbjct: 37 FNPLDIAFITELSFGCIRYRKFLDLWTDH--TSKITHKKQPPKLRWLLHIGLYQLLKMDK 94 Query: 121 VPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIK 160 +P IS V +A +NA+L SRK E K Sbjct: 95 IPFSAAISTTVEVAKKTDLNGLAGTVNAILRNASRKLEQK 134 >gi|212632964|ref|YP_002309489.1| Fmu, rRNA SAM-dependent methyltransferase [Shewanella piezotolerans WP3] gi|212554448|gb|ACJ26902.1| Fmu, rRNA SAM-dependent methyltransferase [Shewanella piezotolerans WP3] Length = 428 Score = 53.2 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 25/139 (17%), Positives = 52/139 (37%), Gaps = 15/139 (10%) Query: 20 RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79 R A + ++Q+ G S + + + + + + D + +GVM Sbjct: 6 RALAAKVVFQVLEKGISLSVALPDQQKH------------LDSGKDKALLAELCYGVMRH 53 Query: 80 KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139 +D +S C+++ I+ +L G ++ +P ISE + Sbjct: 54 LPQLDKQVSDCMSK--PLKGKQRIVHQLLLIGCYQI-YFTRIPSHAAISETAEACRQLKF 110 Query: 140 GDEPKFINAVLDKVSRKEE 158 K +N VL + R+E+ Sbjct: 111 EGLVKVVNGVLRTIQRQEK 129 >gi|194476557|ref|YP_002048736.1| Sun protein (Fmu protein) [Paulinella chromatophora] gi|171191564|gb|ACB42526.1| Sun protein (Fmu protein) [Paulinella chromatophora] Length = 451 Score = 53.2 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 20/103 (19%), Positives = 41/103 (39%), Gaps = 2/103 (1%) Query: 60 VYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECH 119 VD I +G + R+ +D +S L + + + +L +L G+ +L+ Sbjct: 52 PLPPVDRGLATEIAYGSIRRRLTLDTYLS-HLGKVLANKQ-PPLLRWLLHVGLYQLLFVE 109 Query: 120 SVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRS 162 VP I+ V +A +N +L R ++ ++ Sbjct: 110 RVPSAAAINTTVELAKKSSLATLAPVVNGILRTAHRFQQSGKA 152 >gi|256843396|ref|ZP_05548884.1| ribosomal small subunit methyltransferase B [Lactobacillus crispatus 125-2-CHN] gi|256614816|gb|EEU20017.1| ribosomal small subunit methyltransferase B [Lactobacillus crispatus 125-2-CHN] Length = 453 Score = 53.2 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 19/99 (19%), Positives = 38/99 (38%), Gaps = 14/99 (14%) Query: 64 VDLEWFRVIIHGVMDRKQ----HIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECH 119 D I++G + + + L+ + LTEK+ + +L + +LI Sbjct: 53 ADQNLATNIVYGTIQYRLFLEYQLKGLVRTKLTEKY--------IKPLLLMSLYQLIFLD 104 Query: 120 SVPVEVIISEYVCIAHDFFYGDEPKF--INAVLDKVSRK 156 VP ++ E +A + F N +L +R+ Sbjct: 105 KVPDRAVLDEANKLAKQYGKRHSAGFRLANGILRSFTRR 143 >gi|319937497|ref|ZP_08011902.1| SUN protein [Coprobacillus sp. 29_1] gi|319807337|gb|EFW03946.1| SUN protein [Coprobacillus sp. 29_1] Length = 416 Score = 53.2 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 17/87 (19%), Positives = 38/87 (43%), Gaps = 5/87 (5%) Query: 66 LEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEV 125 ++ +++G + +++ L+ L +R+ +L + + S+P Sbjct: 38 KDFITRVVYGTVQNMLYLEYLLEPHLK-----TRVKAYEKMLLLMSLYQHEFMDSIPDYA 92 Query: 126 IISEYVCIAHDFFYGDEPKFINAVLDK 152 I++E V +A +FINAVL+ Sbjct: 93 IVNEAVRLAKKKKGTKTAQFINAVLNH 119 >gi|283852902|ref|ZP_06370163.1| NusB/RsmB/TIM44 [Desulfovibrio sp. FW1012B] gi|283571731|gb|EFC19730.1| NusB/RsmB/TIM44 [Desulfovibrio sp. FW1012B] Length = 451 Score = 53.2 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 21/103 (20%), Positives = 37/103 (35%), Gaps = 3/103 (2%) Query: 52 DTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAG 111 DT L D +++G + ID ++S L + + + + +L Sbjct: 46 DTALAGTKGLDPRDRGLATELVYGYLRLCGRIDWMLSRFLKK---PEAVPLPVRRVLGLA 102 Query: 112 VLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVS 154 V E++ C VP + V NAVL +V+ Sbjct: 103 VYEILYCSRVPAYASVDWAVSAVRRLSGKGLGGMANAVLRRVA 145 >gi|157412841|ref|YP_001483707.1| Sun protein [Prochlorococcus marinus str. MIT 9215] gi|157387416|gb|ABV50121.1| Sun protein (Fmu protein) [Prochlorococcus marinus str. MIT 9215] Length = 438 Score = 53.2 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 23/100 (23%), Positives = 43/100 (43%), Gaps = 2/100 (2%) Query: 61 YLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHS 120 + +D+ + + G + ++ +DL T K + + L +L G+ +L++ Sbjct: 37 FNSLDIAFITELSFGCIRYRKFLDLWTDH--TSKITHKKQPPKLRWLLHIGLYQLLKMDK 94 Query: 121 VPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIK 160 +P IS V +A +NA+L SRK E K Sbjct: 95 IPFPAAISTTVEVAKKTDLNGLAGTVNAILRNASRKLEQK 134 >gi|167621966|ref|YP_001672260.1| sun protein [Shewanella halifaxensis HAW-EB4] gi|167351988|gb|ABZ74601.1| sun protein [Shewanella halifaxensis HAW-EB4] Length = 426 Score = 53.2 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 26/139 (18%), Positives = 53/139 (38%), Gaps = 15/139 (10%) Query: 20 RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79 R A + ++Q+ G S + + + + + D + +GVM Sbjct: 4 RALAAKVVFQVLEKGISLSVALPVQQKH------------LDSGKDKALLAELCYGVMRH 51 Query: 80 KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139 +D +S C++++ + I+ +L G +L +P ISE + Sbjct: 52 LPQLDKQVSDCMSKQMKGKQ--RIVHQLLLVGCYQL-YFTRIPSHAAISETAEACRQLKF 108 Query: 140 GDEPKFINAVLDKVSRKEE 158 K +N VL + R+E+ Sbjct: 109 EGLVKVVNGVLRNIQRQEK 127 >gi|327191218|gb|EGE58261.1| putative RNA methyltransferase - sun protein [Rhizobium etli CNPAF512] Length = 464 Score = 52.8 bits (126), Expect = 2e-05, Method: Composition-based stats. Identities = 36/179 (20%), Positives = 60/179 (33%), Gaps = 16/179 (8%) Query: 1 MTIQDNKKDL---KLSHRRGIARLAAVQ-ALYQIDIIGCSTTEIISEYETYRFCADTEL- 55 M+ KK K S R RLA V+ L ++ D E Sbjct: 1 MSSDGTKKPFRKQKPSSDRPAGRLAPVKPGLQARAAAAKILAAVVDRKLPLDGALDHEHG 60 Query: 56 -DVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLE 114 D R I++ + ID I+S L L +L G + Sbjct: 61 NPAYKALGESDRALVRAILNTTLRHLPRIDAAIASLLES--PLPEGARALHHVLSIGAAQ 118 Query: 115 LIECHSVPVEVIISEYVCIAHDFFYGDEPKF---INAVLDKVSRKEE--IKRSGCVSAI 168 ++ VP + V A+ +F +NAVL ++ R+++ + G V+ + Sbjct: 119 ILY-LDVPDHSAVDLAVEQANQ--DPRNRRFAKLVNAVLRRLGREKDAVLAEIGKVAPM 174 >gi|329576774|gb|EGG58267.1| putative ribosomal RNA small subunit methyltransferase B [Enterococcus faecalis TX1467] Length = 340 Score = 52.8 bits (126), Expect = 2e-05, Method: Composition-based stats. Identities = 22/104 (21%), Positives = 45/104 (43%), Gaps = 3/104 (2%) Query: 53 TELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGV 112 E+ +S D F +++G + RK ++ ++ + + ++D + ++L + Sbjct: 36 NEMMTKSELSEKDGRLFTELVYGTISRKLLLEYYLTPFVKK---PQKVDNWVRNLLILSL 92 Query: 113 LELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRK 156 +L+ VP +I+E V I KF+N VL R Sbjct: 93 YQLLYLDKVPDHAVINEAVEIGKRRGNPGIGKFVNGVLRAFQRN 136 >gi|239917585|ref|YP_002957143.1| ribosomal RNA small subunit methyltransferase RsmB [Micrococcus luteus NCTC 2665] gi|239838792|gb|ACS30589.1| ribosomal RNA small subunit methyltransferase RsmB [Micrococcus luteus NCTC 2665] Length = 543 Score = 52.8 bits (126), Expect = 2e-05, Method: Composition-based stats. Identities = 27/163 (16%), Positives = 55/163 (33%), Gaps = 13/163 (7%) Query: 4 QDNKKDLKLSHRRG---IARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDV--- 57 QD + + RG AR + QA Q + D ++ Sbjct: 29 QDRRDAQGRTRNRGRSGAARKYSAQAPSQRSRTADPARRVAFGVVRSVHAEDAYANLVLP 88 Query: 58 ----ESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVL 113 ++ D + + +G + D +++ C+ ++D + LR G Sbjct: 89 ARIRQARLDRRDAGFATELAYGTLRGLGLYDAILTRCVDR--PLEKIDPPVLDALRLGAH 146 Query: 114 ELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRK 156 +L+ VP + V + F+NAVL +++ + Sbjct: 147 QLLGMR-VPAHAALDATVSLVRAEVGAGASGFVNAVLRRIAER 188 >gi|307943521|ref|ZP_07658865.1| ribosomal RNA small subunit methyltransferase B [Roseibium sp. TrichSKD4] gi|307773151|gb|EFO32368.1| ribosomal RNA small subunit methyltransferase B [Roseibium sp. TrichSKD4] Length = 462 Score = 52.8 bits (126), Expect = 2e-05, Method: Composition-based stats. Identities = 21/130 (16%), Positives = 47/130 (36%), Gaps = 10/130 (7%) Query: 37 TTEIISEYETYRFCADTELDVESVYL------HVDLEWFRVIIHGVMDRKQHIDLLISSC 90 +I+ D EL+++S + D R I+ + + I +++ Sbjct: 36 AADILGNVVHKHRPLDGELELKSGHSGFRALEPKDRALVRAILGAALRHRGEISEILTRL 95 Query: 91 LTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPK-FINAV 149 L + + IL + +++ +P +S V A K +N V Sbjct: 96 LDRDIP-EKTGRV-LDILHVAIAQMLY-LDIPDRAAVSLAVDHASADSRSRVYKGLVNGV 152 Query: 150 LDKVSRKEEI 159 L ++ R+ ++ Sbjct: 153 LRRLGRERDM 162 >gi|320527282|ref|ZP_08028467.1| ribosomal RNA small subunit methyltransferase B [Solobacterium moorei F0204] gi|320132306|gb|EFW24851.1| ribosomal RNA small subunit methyltransferase B [Solobacterium moorei F0204] Length = 405 Score = 52.8 bits (126), Expect = 2e-05, Method: Composition-based stats. Identities = 21/92 (22%), Positives = 38/92 (41%), Gaps = 10/92 (10%) Query: 62 LHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSV 121 ++ II+G + K ++ + + ++L V +L+ S+ Sbjct: 31 SKEEMGLASEIIYGTIRNKTLLEEQWRPFTKH------VKPRVVALLNMSVYQLLFLDSI 84 Query: 122 PVEVIISEYVCIAHDFFYGDEPKFINAVLDKV 153 P +I E V +A E +F+NAVL KV Sbjct: 85 PSYAVIFEAVELA----GKSEKEFVNAVLRKV 112 >gi|197124464|ref|YP_002136415.1| NusB/RsmB/TIM44 [Anaeromyxobacter sp. K] gi|196174313|gb|ACG75286.1| NusB/RsmB/TIM44 [Anaeromyxobacter sp. K] Length = 455 Score = 52.8 bits (126), Expect = 2e-05, Method: Composition-based stats. Identities = 21/100 (21%), Positives = 38/100 (38%), Gaps = 3/100 (3%) Query: 68 WFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVII 127 +++G + R +D ++ + LD LR G +L+ P + Sbjct: 51 LATELVYGTLRRALALDAALAPHSRR--PLAELDPAARVALRLGAYQLL-VLGTPAHAAV 107 Query: 128 SEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRSGCVSA 167 E V +A +G ++NAVL +SR + A Sbjct: 108 GETVALAKAVDHGRAAGYVNAVLRSLSRAARFPDPPALEA 147 >gi|320334556|ref|YP_004171267.1| NusB/RsmB/TIM44 [Deinococcus maricopensis DSM 21211] gi|319755845|gb|ADV67602.1| NusB/RsmB/TIM44 [Deinococcus maricopensis DSM 21211] Length = 420 Score = 52.8 bits (126), Expect = 2e-05, Method: Composition-based stats. Identities = 32/153 (20%), Positives = 52/153 (33%), Gaps = 24/153 (15%) Query: 1 MTIQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESV 60 MT + R AR AV+ L + G + E + + Sbjct: 1 MTDAPTRAP----RRANPARAVAVRVL-ARVLGGAFAAPTLDEALAH-----------AR 44 Query: 61 YLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHS 120 D I++G + + + + L ++L AG E + + Sbjct: 45 LPARDAGLATHIVYGALRHAPTLLPALDALLKGSTPIKA-----RALLLAGAFEKLVLGT 99 Query: 121 VPVEVIISEYVCIAHDFFYGDEPKFINAVLDKV 153 P +SEYV +A D F P +NAVL +V Sbjct: 100 APHA-AVSEYVTLARDGFA--SPGLVNAVLRRV 129 >gi|113954299|ref|YP_729912.1| sun protein [Synechococcus sp. CC9311] gi|113881650|gb|ABI46608.1| sun protein [Synechococcus sp. CC9311] Length = 449 Score = 52.4 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 24/156 (15%), Positives = 49/156 (31%), Gaps = 30/156 (19%) Query: 19 ARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMD 78 AR A++ L + + ++ R ++ D + +G + Sbjct: 17 ARRLALEVL---EAVAAGAYADVALERALR---------QNPLSPADRGLATELAYGCIR 64 Query: 79 RKQHIDLLISSCLTEKWSFSRLDMI--------LCSILRAGVLELIECHSVPVEVIISEY 130 +Q +D W RL + L +L G+ +++ +P + Sbjct: 65 WRQWLD---------GW-LDRLGKVPAHKQPPRLRWLLHLGLYQVLRMQRIPASAAVDTT 114 Query: 131 VCIAHDFFYGDEPKFINAVLDKVSRKEEIKRSGCVS 166 V +A +N VL R +E + V Sbjct: 115 VELAKRQRLSKLSPVVNGVLRSALRAKEAGETLPVP 150 >gi|124023762|ref|YP_001018069.1| Sun protein (Fmu protein) [Prochlorococcus marinus str. MIT 9303] gi|123964048|gb|ABM78804.1| Sun protein (Fmu protein) [Prochlorococcus marinus str. MIT 9303] Length = 450 Score = 52.4 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 16/110 (14%), Positives = 37/110 (33%), Gaps = 18/110 (16%) Query: 58 ESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRL--------DMILCSILR 109 ++ D + +G + ++Q +D W RL +L +L Sbjct: 47 QNPMSGADRGLVMELAYGAIRQRQWLDA---------W-LDRLGKVPACKQPPVLRWLLH 96 Query: 110 AGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEI 159 G+ +++ +P ++ V +A +N +L R + Sbjct: 97 LGLYQILRMQRIPAAAAVNTSVELAKTGKLARLAPVVNGILRAALRARDA 146 >gi|227500111|ref|ZP_03930182.1| possible rRNA SAM-dependent methyltransferase RmsB [Anaerococcus tetradius ATCC 35098] gi|227217826|gb|EEI83123.1| possible rRNA SAM-dependent methyltransferase RmsB [Anaerococcus tetradius ATCC 35098] Length = 433 Score = 52.4 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 19/93 (20%), Positives = 40/93 (43%), Gaps = 4/93 (4%) Query: 66 LEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEV 125 L + +I+GV++ K ++D +I K ++ + +IL G+ + + + Sbjct: 35 LAYATKLIYGVLENKIYLDYMIGKL--SKVKIKKIHKNVLTILEMGLYNIHFLATKDYAI 92 Query: 126 IISEYVCIAHDFFYGDEPKFINAVLDKVSRKEE 158 + + V + F+NA+L R EE Sbjct: 93 V-DKLVELCKK-KNKRSANFVNAILRNFIRNEE 123 >gi|300861499|ref|ZP_07107583.1| ribosomal RNA small subunit methyltransferase B [Enterococcus faecalis TUSoD Ef11] gi|295114431|emb|CBL33068.1| ribosomal RNA small subunit methyltransferase RsmB [Enterococcus sp. 7L76] gi|300848960|gb|EFK76713.1| ribosomal RNA small subunit methyltransferase B [Enterococcus faecalis TUSoD Ef11] gi|315144147|gb|EFT88163.1| ribosomal RNA small subunit methyltransferase B [Enterococcus faecalis TX2141] Length = 459 Score = 52.4 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 22/104 (21%), Positives = 45/104 (43%), Gaps = 3/104 (2%) Query: 53 TELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGV 112 E+ +S D F +++G + RK ++ ++ + + ++D + ++L + Sbjct: 36 NEMMTKSELSEKDGRLFTELVYGTISRKLLLEYYLTPFVKK---PQKVDNWVKNLLILSL 92 Query: 113 LELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRK 156 +L+ VP +I+E V I KF+N VL R Sbjct: 93 YQLLYLDKVPDHAVINEAVEIGKRRGNPGIGKFVNGVLRAFQRN 136 >gi|33862543|ref|NP_894103.1| Sun protein (Fmu protein) [Prochlorococcus marinus str. MIT 9313] gi|33640656|emb|CAE20445.1| Sun protein (Fmu protein) [Prochlorococcus marinus str. MIT 9313] Length = 451 Score = 52.4 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 16/110 (14%), Positives = 37/110 (33%), Gaps = 18/110 (16%) Query: 58 ESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRL--------DMILCSILR 109 ++ D + +G + ++Q +D W RL +L +L Sbjct: 48 QNPMSGADRGLVMELAYGAIRQRQWLDA---------W-LDRLGKVPACKQPPVLRWLLH 97 Query: 110 AGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEI 159 G+ +++ +P ++ V +A +N +L R + Sbjct: 98 LGLYQILRMQRIPAAAAVNTSVELAKTGKLARLAPVVNGILRAALRARDA 147 >gi|123968018|ref|YP_001008876.1| Sun protein (Fmu protein) [Prochlorococcus marinus str. AS9601] gi|123198128|gb|ABM69769.1| Sun protein (Fmu protein) [Prochlorococcus marinus str. AS9601] Length = 438 Score = 52.4 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 22/100 (22%), Positives = 43/100 (43%), Gaps = 2/100 (2%) Query: 61 YLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHS 120 + +D+ + + G + ++ +DL T K + + L +L G+ +L++ Sbjct: 37 FNPLDIAFITELSFGCIRYRKFLDLWTDH--TSKITHKKQPPKLRWLLHIGLYQLLKMDK 94 Query: 121 VPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIK 160 +P I+ V +A +NA+L SRK E K Sbjct: 95 IPFPAAITTTVEVAKKTDLNGLAGTVNAILRNASRKLEQK 134 >gi|119773183|ref|YP_925923.1| sun protein [Shewanella amazonensis SB2B] gi|119765683|gb|ABL98253.1| sun protein [Shewanella amazonensis SB2B] Length = 427 Score = 52.4 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 21/92 (22%), Positives = 34/92 (36%), Gaps = 3/92 (3%) Query: 65 DLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVE 124 D I +GVM +D L+S + + ++ +L G +L VP Sbjct: 37 DKALLAEICYGVMRSLPQLDKLVSGYMQK--PLKGKQRVVHQLLLVGAYQL-YFTRVPAH 93 Query: 125 VIISEYVCIAHDFFYGDEPKFINAVLDKVSRK 156 ISE + K +N VL + R+ Sbjct: 94 AAISETAEGCRALGFESLVKVVNGVLRNIQRQ 125 >gi|257420431|ref|ZP_05597421.1| SUN protein [Enterococcus faecalis X98] gi|257162255|gb|EEU92215.1| SUN protein [Enterococcus faecalis X98] gi|315154707|gb|EFT98723.1| ribosomal RNA small subunit methyltransferase B [Enterococcus faecalis TX0043] Length = 459 Score = 52.4 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 22/104 (21%), Positives = 45/104 (43%), Gaps = 3/104 (2%) Query: 53 TELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGV 112 E+ +S D F +++G + RK ++ ++ + + ++D + ++L + Sbjct: 36 NEMMTKSELSEKDGRLFTELVYGTISRKLLLEYYLTPFVKK---PQKVDNWVKNLLILSL 92 Query: 113 LELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRK 156 +L+ VP +I+E V I KF+N VL R Sbjct: 93 YQLLYLDKVPDHAVINEAVEIGKRRGNPGIGKFVNGVLRAFQRN 136 >gi|29377578|ref|NP_816732.1| Sun protein [Enterococcus faecalis V583] gi|227554542|ref|ZP_03984589.1| RNA methyltransferase [Enterococcus faecalis HH22] gi|257417966|ref|ZP_05594960.1| SUN protein [Enterococcus faecalis T11] gi|29345045|gb|AAO82802.1| Sun protein [Enterococcus faecalis V583] gi|227176340|gb|EEI57312.1| RNA methyltransferase [Enterococcus faecalis HH22] gi|257159794|gb|EEU89754.1| SUN protein [Enterococcus faecalis T11] gi|315573270|gb|EFU85461.1| ribosomal RNA small subunit methyltransferase B [Enterococcus faecalis TX0309B] gi|315581156|gb|EFU93347.1| ribosomal RNA small subunit methyltransferase B [Enterococcus faecalis TX0309A] Length = 459 Score = 52.4 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 22/104 (21%), Positives = 45/104 (43%), Gaps = 3/104 (2%) Query: 53 TELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGV 112 E+ +S D F +++G + RK ++ ++ + + ++D + ++L + Sbjct: 36 NEMMTKSELSEKDGRLFTELVYGTISRKLLLEYYLTPFVKK---PQKVDNWVKNLLILSL 92 Query: 113 LELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRK 156 +L+ VP +I+E V I KF+N VL R Sbjct: 93 YQLLYLDKVPDHAVINEAVEIGKRRGNPGIGKFVNGVLRAFQRN 136 >gi|227517271|ref|ZP_03947320.1| RNA methyltransferase [Enterococcus faecalis TX0104] gi|229548022|ref|ZP_04436747.1| RNA methyltransferase [Enterococcus faecalis ATCC 29200] gi|255970686|ref|ZP_05421272.1| sun protein [Enterococcus faecalis T1] gi|255974266|ref|ZP_05424852.1| sun protein [Enterococcus faecalis T2] gi|256618123|ref|ZP_05474969.1| fmu family protein [Enterococcus faecalis ATCC 4200] gi|256761053|ref|ZP_05501633.1| sun protein [Enterococcus faecalis T3] gi|256854793|ref|ZP_05560157.1| sun protein [Enterococcus faecalis T8] gi|256962961|ref|ZP_05567132.1| fmu [Enterococcus faecalis HIP11704] gi|257083204|ref|ZP_05577565.1| conserved hypothetical protein [Enterococcus faecalis Fly1] gi|257088233|ref|ZP_05582594.1| conserved hypothetical protein [Enterococcus faecalis D6] gi|257091364|ref|ZP_05585725.1| SUN protein [Enterococcus faecalis CH188] gi|307273621|ref|ZP_07554849.1| ribosomal RNA small subunit methyltransferase B [Enterococcus faecalis TX0855] gi|307284853|ref|ZP_07565009.1| ribosomal RNA small subunit methyltransferase B [Enterococcus faecalis TX0860] gi|307288887|ref|ZP_07568860.1| ribosomal RNA small subunit methyltransferase B [Enterococcus faecalis TX0109] gi|312902128|ref|ZP_07761388.1| ribosomal RNA small subunit methyltransferase B [Enterococcus faecalis TX0470] gi|312905428|ref|ZP_07764542.1| ribosomal RNA small subunit methyltransferase B [Enterococcus faecalis TX0635] gi|312953217|ref|ZP_07772063.1| ribosomal RNA small subunit methyltransferase B [Enterococcus faecalis TX0102] gi|227075278|gb|EEI13241.1| RNA methyltransferase [Enterococcus faecalis TX0104] gi|229306898|gb|EEN72894.1| RNA methyltransferase [Enterococcus faecalis ATCC 29200] gi|255961704|gb|EET94180.1| sun protein [Enterococcus faecalis T1] gi|255967138|gb|EET97760.1| sun protein [Enterococcus faecalis T2] gi|256597650|gb|EEU16826.1| fmu family protein [Enterococcus faecalis ATCC 4200] gi|256682304|gb|EEU21999.1| sun protein [Enterococcus faecalis T3] gi|256710353|gb|EEU25397.1| sun protein [Enterococcus faecalis T8] gi|256953457|gb|EEU70089.1| fmu [Enterococcus faecalis HIP11704] gi|256991234|gb|EEU78536.1| conserved hypothetical protein [Enterococcus faecalis Fly1] gi|256996263|gb|EEU83565.1| conserved hypothetical protein [Enterococcus faecalis D6] gi|257000176|gb|EEU86696.1| SUN protein [Enterococcus faecalis CH188] gi|306500159|gb|EFM69503.1| ribosomal RNA small subunit methyltransferase B [Enterococcus faecalis TX0109] gi|306503112|gb|EFM72369.1| ribosomal RNA small subunit methyltransferase B [Enterococcus faecalis TX0860] gi|306509634|gb|EFM78676.1| ribosomal RNA small subunit methyltransferase B [Enterococcus faecalis TX0855] gi|310628834|gb|EFQ12117.1| ribosomal RNA small subunit methyltransferase B [Enterococcus faecalis TX0102] gi|310631157|gb|EFQ14440.1| ribosomal RNA small subunit methyltransferase B [Enterococcus faecalis TX0635] gi|311290792|gb|EFQ69348.1| ribosomal RNA small subunit methyltransferase B [Enterococcus faecalis TX0470] gi|315026431|gb|EFT38363.1| ribosomal RNA small subunit methyltransferase B [Enterococcus faecalis TX2137] gi|315028355|gb|EFT40287.1| ribosomal RNA small subunit methyltransferase B [Enterococcus faecalis TX4000] gi|315031807|gb|EFT43739.1| ribosomal RNA small subunit methyltransferase B [Enterococcus faecalis TX0017] gi|315150899|gb|EFT94915.1| ribosomal RNA small subunit methyltransferase B [Enterococcus faecalis TX0012] gi|315152786|gb|EFT96802.1| ribosomal RNA small subunit methyltransferase B [Enterococcus faecalis TX0031] gi|315159379|gb|EFU03396.1| ribosomal RNA small subunit methyltransferase B [Enterococcus faecalis TX0312] gi|315161202|gb|EFU05219.1| ribosomal RNA small subunit methyltransferase B [Enterococcus faecalis TX0645] gi|315164414|gb|EFU08431.1| ribosomal RNA small subunit methyltransferase B [Enterococcus faecalis TX1302] gi|315167222|gb|EFU11239.1| ribosomal RNA small subunit methyltransferase B [Enterococcus faecalis TX1341] gi|315171200|gb|EFU15217.1| ribosomal RNA small subunit methyltransferase B [Enterococcus faecalis TX1342] gi|315577118|gb|EFU89309.1| ribosomal RNA small subunit methyltransferase B [Enterococcus faecalis TX0630] gi|323479050|gb|ADX78489.1| ribosomal RNA small subunit methyltransferase B [Enterococcus faecalis 62] gi|327536239|gb|AEA95073.1| ribosomal RNA small subunit methyltransferase B [Enterococcus faecalis OG1RF] Length = 459 Score = 52.0 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 22/104 (21%), Positives = 45/104 (43%), Gaps = 3/104 (2%) Query: 53 TELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGV 112 E+ +S D F +++G + RK ++ ++ + + ++D + ++L + Sbjct: 36 NEMMTKSELSEKDGRLFTELVYGTISRKLLLEYYLTPFVKK---PQKVDNWVKNLLILSL 92 Query: 113 LELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRK 156 +L+ VP +I+E V I KF+N VL R Sbjct: 93 YQLLYLDKVPDHAVINEAVEIGKRRGNPGIGKFVNGVLRAFQRN 136 >gi|307276657|ref|ZP_07557775.1| ribosomal RNA small subunit methyltransferase B [Enterococcus faecalis TX2134] gi|306506767|gb|EFM75919.1| ribosomal RNA small subunit methyltransferase B [Enterococcus faecalis TX2134] Length = 459 Score = 52.0 bits (124), Expect = 3e-05, Method: Composition-based stats. Identities = 22/104 (21%), Positives = 45/104 (43%), Gaps = 3/104 (2%) Query: 53 TELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGV 112 E+ +S D F +++G + RK ++ ++ + + ++D + ++L + Sbjct: 36 NEMMTKSELSEKDGRLFTELVYGTISRKLLLEYYLTPFVKK---PQKVDNWVKNLLILSL 92 Query: 113 LELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRK 156 +L+ VP +I+E V I KF+N VL R Sbjct: 93 YQLLYLDKVPDHAVINEAVEIGKRRGNPGIGKFVNGVLRAFQRN 136 >gi|242277628|ref|YP_002989757.1| NusB/RsmB/TIM44 [Desulfovibrio salexigens DSM 2638] gi|242120522|gb|ACS78218.1| NusB/RsmB/TIM44 [Desulfovibrio salexigens DSM 2638] Length = 427 Score = 52.0 bits (124), Expect = 3e-05, Method: Composition-based stats. Identities = 21/94 (22%), Positives = 36/94 (38%), Gaps = 4/94 (4%) Query: 65 DLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVE 124 D + I++G + + + +++ L+ IL +L E++ VP Sbjct: 45 DRGFVTEILYGYLRMRLRLQSVLNCFLSRPDGLP--APILR-VLGMAAYEILHM-DVPAY 100 Query: 125 VIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEE 158 + V A G NAVL KV+R E Sbjct: 101 ASVDWGVDSAKRLSRGKLGGLANAVLRKVARLAE 134 >gi|229547453|ref|ZP_04436178.1| RNA methyltransferase [Enterococcus faecalis TX1322] gi|229307485|gb|EEN73472.1| RNA methyltransferase [Enterococcus faecalis TX1322] Length = 459 Score = 52.0 bits (124), Expect = 3e-05, Method: Composition-based stats. Identities = 22/104 (21%), Positives = 45/104 (43%), Gaps = 3/104 (2%) Query: 53 TELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGV 112 E+ +S D F +++G + RK ++ ++ + + ++D + ++L + Sbjct: 36 NEMMTKSELSEKDGRLFTELVYGTISRKLLLEYYLTPFVKK---PQKVDNWVKNLLILSL 92 Query: 113 LELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRK 156 +L+ VP +I+E V I KF+N VL R Sbjct: 93 YQLLYLDKVPDHAVINEAVEIGKRRGNPGIGKFVNGVLRAFQRN 136 >gi|209551488|ref|YP_002283405.1| Fmu (Sun) domain protein [Rhizobium leguminosarum bv. trifolii WSM2304] gi|209537244|gb|ACI57179.1| Fmu (Sun) domain protein [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 462 Score = 52.0 bits (124), Expect = 3e-05, Method: Composition-based stats. Identities = 36/166 (21%), Positives = 58/166 (34%), Gaps = 19/166 (11%) Query: 3 IQDNKKDLKLSHRRGIARLAAVQ-ALYQIDIIGCSTTEIISEYETYRFCADTELDVE--- 58 D K H+R R A V+ L + +I+ + D LD E Sbjct: 4 NSDGTKKPFRKHKRSTERSAPVKPGL----QARAAAAKILGAVVERKLPLDGALDHEHGN 59 Query: 59 ---SVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLEL 115 D R I++ + ID ISS L L +L GV ++ Sbjct: 60 PAYKALGESDRALVRAILNTTLRHLPRIDAAISSLLES--PLPEGARALQHVLAIGVAQI 117 Query: 116 IECHSVPVEVIISEYVCIAHDFFYGDEPKF---INAVLDKVSRKEE 158 + VP + V A+ +F +NAVL ++ R+++ Sbjct: 118 LY-LDVPDHSAVDLAVEQANQ--DPRNRRFAKLVNAVLRRLGREKD 160 >gi|84684376|ref|ZP_01012277.1| ribosomal RNA small subunit methyltransferase B, putative [Maritimibacter alkaliphilus HTCC2654] gi|84667355|gb|EAQ13824.1| ribosomal RNA small subunit methyltransferase B, putative [Rhodobacterales bacterium HTCC2654] Length = 420 Score = 52.0 bits (124), Expect = 3e-05, Method: Composition-based stats. Identities = 21/112 (18%), Positives = 39/112 (34%), Gaps = 11/112 (9%) Query: 45 ETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMIL 104 E R + D + ++ D ++ L ++ + R+ Sbjct: 21 EHGRLLPEVLPRRLEKLAPEDRARTQRLVATAFRVMDRADRVLGPHLRKRPTL-RI---- 75 Query: 105 CSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKF---INAVLDKV 153 +ILR V E+ E + P V+ + V +A +NA+L KV Sbjct: 76 HNILRLSVAEICELGAAPHGVV-NTAVELARA--DKKTAGMAGLVNAILRKV 124 >gi|20095066|ref|NP_614913.1| tRNA/rRNA cytosine-C5-methylase [Methanopyrus kandleri AV19] gi|19888345|gb|AAM02843.1| tRNA/rRNA cytosine-C5-methylase [Methanopyrus kandleri AV19] Length = 448 Score = 52.0 bits (124), Expect = 3e-05, Method: Composition-based stats. Identities = 34/135 (25%), Positives = 52/135 (38%), Gaps = 15/135 (11%) Query: 21 LAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRK 80 L AV+AL ++ G E + R C D +DV + ++ + R+ Sbjct: 5 LLAVKALVLVETRGMPIPEAVE-----RTCRDRPIDVRRSV--------QAFVYETIKRR 51 Query: 81 QHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYG 140 +D L+++ R + ILR G LE+ + P V V IA Sbjct: 52 NLLDELVAAGSDAHPEDVRSPYV-RQILRVGTLEMKIWRNPPPAVT-DCMVRIAKRLVGS 109 Query: 141 DEPKFINAVLDKVSR 155 F+NAVL V R Sbjct: 110 KAGAFVNAVLRGVER 124 >gi|281413929|ref|ZP_06245671.1| ribosomal RNA small subunit methyltransferase RsmB [Micrococcus luteus NCTC 2665] Length = 305 Score = 52.0 bits (124), Expect = 3e-05, Method: Composition-based stats. Identities = 27/163 (16%), Positives = 55/163 (33%), Gaps = 13/163 (7%) Query: 4 QDNKKDLKLSHRRG---IARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDV--- 57 QD + + RG AR + QA Q + D ++ Sbjct: 29 QDRRDAQGRTRNRGRSGAARKYSAQAPSQRSRTADPARRVAFGVVRSVHAEDAYANLVLP 88 Query: 58 ----ESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVL 113 ++ D + + +G + D +++ C+ ++D + LR G Sbjct: 89 ARIRQARLDRRDAGFATELAYGTLRGLGLYDAILTRCVDR--PLEKIDPPVLDALRLGAH 146 Query: 114 ELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRK 156 +L+ VP + V + F+NAVL +++ + Sbjct: 147 QLLGMR-VPAHAALDATVSLVRAEVGAGASGFVNAVLRRIAER 188 >gi|323699391|ref|ZP_08111303.1| Fmu (Sun) domain protein [Desulfovibrio sp. ND132] gi|323459323|gb|EGB15188.1| Fmu (Sun) domain protein [Desulfovibrio desulfuricans ND132] Length = 424 Score = 52.0 bits (124), Expect = 3e-05, Method: Composition-based stats. Identities = 22/137 (16%), Positives = 46/137 (33%), Gaps = 14/137 (10%) Query: 18 IARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVM 77 AR A++AL++ + + + V DL + +G + Sbjct: 11 AARRVALEALFRCLMNRQDIQASLDAALS-----------SGVDDPRDLGLATELSYGYL 59 Query: 78 DRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDF 137 K I+ ++S L +L+ + + E++ +P + V + Sbjct: 60 RLKGRIEYVLSRFLK---DPGKLNPKMRLAMGVAAYEILFLDKIPAYASVDWAVEFSKSK 116 Query: 138 FYGDEPKFINAVLDKVS 154 NAVL +V+ Sbjct: 117 PGARLAGLFNAVLRRVA 133 >gi|332559578|ref|ZP_08413900.1| Fmu (Sun) domain-containing protein [Rhodobacter sphaeroides WS8N] gi|332277290|gb|EGJ22605.1| Fmu (Sun) domain-containing protein [Rhodobacter sphaeroides WS8N] Length = 410 Score = 52.0 bits (124), Expect = 3e-05, Method: Composition-based stats. Identities = 20/126 (15%), Positives = 46/126 (36%), Gaps = 9/126 (7%) Query: 31 DIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSC 90 + G + T + + + + D+ + + + V+ D L++ Sbjct: 4 EARGMAVTLLDAVLGEGKLLSQALADLPGAAAPAERARAQRLASSVLRHLGPADRLLAPH 63 Query: 91 LTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEP--KFINA 148 L + + +ILR +E+ + P V+ S V +A + +NA Sbjct: 64 LRKAPPL-----TVRNILRLATVEMAADGAAPHGVV-SSAVDLARR-GRRTQHLAGLVNA 116 Query: 149 VLDKVS 154 VL +++ Sbjct: 117 VLRRIA 122 >gi|77464685|ref|YP_354189.1| rRNA methyltransferase RsmB-like [Rhodobacter sphaeroides 2.4.1] gi|77389103|gb|ABA80288.1| rRNA methyltransferase RsmB-like [Rhodobacter sphaeroides 2.4.1] Length = 421 Score = 52.0 bits (124), Expect = 3e-05, Method: Composition-based stats. Identities = 17/87 (19%), Positives = 35/87 (40%), Gaps = 9/87 (10%) Query: 70 RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISE 129 + + V+ D L++ L + + +ILR +E+ + P V+ S Sbjct: 56 QRLASSVLRHLGPADRLLAPHLRKAPPL-----TVRNILRLATVEMAADGAAPHGVV-SS 109 Query: 130 YVCIAHDFFYGDEP--KFINAVLDKVS 154 V +A + +NAVL +++ Sbjct: 110 AVDLARR-GRRTQHLAGLVNAVLRRIA 135 >gi|127514666|ref|YP_001095863.1| sun protein [Shewanella loihica PV-4] gi|126639961|gb|ABO25604.1| sun protein [Shewanella loihica PV-4] Length = 427 Score = 52.0 bits (124), Expect = 3e-05, Method: Composition-based stats. Identities = 27/139 (19%), Positives = 51/139 (36%), Gaps = 15/139 (10%) Query: 20 RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79 R A + ++Q+ G S + + E + + D + +GVM Sbjct: 5 RALAARVVFQVLEKGVSLSVALPE------------QQQRLTSGKDKALLAELCYGVMRH 52 Query: 80 KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139 +D L+S C+++ I+ +L G +L +P ISE + Sbjct: 53 LPQLDKLVSDCMSK--PLKGKQRIVHQLLLVGCYQL-YFTRIPGHAAISETAEACRQLKF 109 Query: 140 GDEPKFINAVLDKVSRKEE 158 K +N VL + R ++ Sbjct: 110 EGLVKVVNGVLRNLQRNQK 128 >gi|160873155|ref|YP_001552471.1| sun protein [Shewanella baltica OS195] gi|160858677|gb|ABX47211.1| sun protein [Shewanella baltica OS195] gi|315265380|gb|ADT92233.1| sun protein [Shewanella baltica OS678] Length = 428 Score = 52.0 bits (124), Expect = 3e-05, Method: Composition-based stats. Identities = 27/137 (19%), Positives = 50/137 (36%), Gaps = 15/137 (10%) Query: 20 RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79 R A +A++++ G S + + + + + + D + +GVM Sbjct: 4 RALAAKAIFEVLEKGVSLSVALPDQQKH------------LASGKDKALLAELCYGVMRT 51 Query: 80 KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139 I+ IS CL + I+ +L G +L +P ISE + Sbjct: 52 LPQIEKRISECLAK--PLKGKQRIIHQLLIIGCYQL-YFTRIPSHAAISETAEACRQLKF 108 Query: 140 GDEPKFINAVLDKVSRK 156 K +N VL + R+ Sbjct: 109 EGMVKVVNGVLRNIQRQ 125 >gi|86359687|ref|YP_471579.1| RNA methyltransferase - sun protein [Rhizobium etli CFN 42] gi|86283789|gb|ABC92852.1| probable RNA methyltransferase - sun protein [Rhizobium etli CFN 42] Length = 464 Score = 51.6 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 24/111 (21%), Positives = 44/111 (39%), Gaps = 10/111 (9%) Query: 63 HVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVP 122 D R I++ + ID I+S L L +L G +++ VP Sbjct: 69 ESDRALVRAILNTTLRHLPRIDAAIASLLES--PLPEGARALHHVLAIGAAQILY-LDVP 125 Query: 123 VEVIISEYVCIAHDFFYGDEPKF---INAVLDKVSRKEE--IKRSGCVSAI 168 + V A+ +F +NAVL ++ R+++ + R G V+ + Sbjct: 126 DHSAVDLAVEQANQ--DPRNRRFAKLVNAVLRRLGREKDEVLARIGKVAPM 174 >gi|269215462|ref|ZP_06159316.1| putative Fmu, rRNA SAM-dependent methyltransferase:Nop2p [Slackia exigua ATCC 700122] gi|269130949|gb|EEZ62024.1| putative Fmu, rRNA SAM-dependent methyltransferase:Nop2p [Slackia exigua ATCC 700122] Length = 502 Score = 51.6 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 19/100 (19%), Positives = 35/100 (35%), Gaps = 5/100 (5%) Query: 59 SVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIEC 118 D+ + + GV +D I ++ S + + LR EL+ Sbjct: 97 EDIDPKDVAFATRLSKGVAATWGTLDEFIDRTMS---SPDDIQADVRDALRVSAYELVFL 153 Query: 119 HSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEE 158 H P V++ + V + F NAVL ++ + Sbjct: 154 HK-PPHVVVDQGVELVR-FVEPKAANLANAVLHRMVEAAD 191 >gi|319424439|gb|ADV52513.1| sun protein [Shewanella putrefaciens 200] Length = 429 Score = 51.6 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 28/137 (20%), Positives = 50/137 (36%), Gaps = 15/137 (10%) Query: 20 RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79 R A +A++++ G S + + E + + + D + +GVM Sbjct: 4 RALAAKAIFEVLEKGVSLSVALPEQQKH------------LASGKDKALLAELCYGVMRT 51 Query: 80 KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139 I+ IS CL + I+ +L G +L +P ISE + Sbjct: 52 LPQIEKRISECLEK--PLKGKQRIIHQLLIVGCYQL-YFTRIPSHAAISETAEACRQLKF 108 Query: 140 GDEPKFINAVLDKVSRK 156 K +N VL + R+ Sbjct: 109 EGMVKVVNGVLRNIQRQ 125 >gi|319409409|emb|CBI83055.1| SUN-family protein [Bartonella schoenbuchensis R1] Length = 447 Score = 51.6 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 21/122 (17%), Positives = 42/122 (34%), Gaps = 10/122 (8%) Query: 40 IISEYETYRFCADTELDVESVY--LHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSF 97 ++ ++++ D E H D R I+ + + I +S L Sbjct: 22 VLDKHKSLSGLTDHEYGHPHYLKLSHRDRLLCRAILMAALRHRGQITAALSRFLKRPLPL 81 Query: 98 SRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKF---INAVLDKVS 154 L L +L +++ +P I V +A +F +NA+L + Sbjct: 82 QALS--LQHLLHISAAQILY-LDIPDHAAIDLAVQMAKI--DPRTRRFSGLVNAILRNFA 136 Query: 155 RK 156 R+ Sbjct: 137 RE 138 >gi|146291133|ref|YP_001181557.1| sun protein [Shewanella putrefaciens CN-32] gi|145562823|gb|ABP73758.1| sun protein [Shewanella putrefaciens CN-32] Length = 429 Score = 51.6 bits (123), Expect = 4e-05, Method: Composition-based stats. Identities = 28/137 (20%), Positives = 50/137 (36%), Gaps = 15/137 (10%) Query: 20 RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79 R A +A++++ G S + + E + + + D + +GVM Sbjct: 4 RALAAKAIFEVLEKGVSLSVALPEQQKH------------LASGKDKALLAELCYGVMRT 51 Query: 80 KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139 I+ IS CL + I+ +L G +L +P ISE + Sbjct: 52 LPQIEKRISECLEK--PLKGKQRIIHQLLIVGCYQL-YFTRIPSHAAISETAEACRQLKF 108 Query: 140 GDEPKFINAVLDKVSRK 156 K +N VL + R+ Sbjct: 109 EGMVKVVNGVLRNIQRQ 125 >gi|86160386|ref|YP_467171.1| NusB/RsmB/TIM44 family protein [Anaeromyxobacter dehalogenans 2CP-C] gi|85776897|gb|ABC83734.1| NusB/RsmB/TIM44 family protein [Anaeromyxobacter dehalogenans 2CP-C] Length = 455 Score = 51.6 bits (123), Expect = 4e-05, Method: Composition-based stats. Identities = 21/100 (21%), Positives = 38/100 (38%), Gaps = 3/100 (3%) Query: 68 WFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVII 127 +++G + R +D ++ + LD LR G +L+ P + Sbjct: 51 LATQLVYGTLRRALALDAALAPHSRR--PLAELDPAARVALRLGAYQLL-VLGTPAHAAV 107 Query: 128 SEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRSGCVSA 167 E V +A +G ++NAVL +SR + A Sbjct: 108 GETVTLAKAADHGRAAGYVNAVLRALSRAPRFPDPPALEA 147 >gi|126172286|ref|YP_001048435.1| sun protein [Shewanella baltica OS155] gi|125995491|gb|ABN59566.1| sun protein [Shewanella baltica OS155] Length = 428 Score = 51.6 bits (123), Expect = 4e-05, Method: Composition-based stats. Identities = 27/137 (19%), Positives = 50/137 (36%), Gaps = 15/137 (10%) Query: 20 RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79 R A +A++++ G S + + + + + + D + +GVM Sbjct: 4 RALAAKAIFEVLEKGVSLSVALPDQQKH------------LASGKDKALLAELCYGVMRT 51 Query: 80 KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139 I+ IS CL + I+ +L G +L +P ISE + Sbjct: 52 LPQIEKRISECLAK--PLKGKQRIIHQLLIIGCYQL-YFTRIPSHAAISETAEACRQLKF 108 Query: 140 GDEPKFINAVLDKVSRK 156 K +N VL + R+ Sbjct: 109 EGMVKVVNGVLRNIQRQ 125 >gi|217971245|ref|YP_002355996.1| sun protein [Shewanella baltica OS223] gi|217496380|gb|ACK44573.1| sun protein [Shewanella baltica OS223] Length = 428 Score = 51.6 bits (123), Expect = 4e-05, Method: Composition-based stats. Identities = 27/137 (19%), Positives = 50/137 (36%), Gaps = 15/137 (10%) Query: 20 RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79 R A +A++++ G S + + + + + + D + +GVM Sbjct: 4 RALAAKAIFEVLEKGVSLSVALPDQQKH------------LASGKDKALLAELCYGVMRT 51 Query: 80 KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139 I+ IS CL + I+ +L G +L +P ISE + Sbjct: 52 LPQIEKRISECLAK--PLKGKQRIIHQLLIIGCYQL-YFTRIPSHAAISETAEACRQLKF 108 Query: 140 GDEPKFINAVLDKVSRK 156 K +N VL + R+ Sbjct: 109 EGMVKVVNGVLRNIQRQ 125 >gi|304412733|ref|ZP_07394336.1| sun protein [Shewanella baltica OS183] gi|307305802|ref|ZP_07585548.1| sun protein [Shewanella baltica BA175] gi|304348943|gb|EFM13358.1| sun protein [Shewanella baltica OS183] gi|306911295|gb|EFN41721.1| sun protein [Shewanella baltica BA175] Length = 428 Score = 51.6 bits (123), Expect = 4e-05, Method: Composition-based stats. Identities = 27/137 (19%), Positives = 50/137 (36%), Gaps = 15/137 (10%) Query: 20 RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79 R A +A++++ G S + + + + + + D + +GVM Sbjct: 4 RALAAKAIFEVLEKGVSLSVALPDQQKH------------LASGKDKALLAELCYGVMRT 51 Query: 80 KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139 I+ IS CL + I+ +L G +L +P ISE + Sbjct: 52 LPQIEKRISECLAK--PLKGKQRIIHQLLIIGCYQL-YFTRIPSHAAISETAEACRQLKF 108 Query: 140 GDEPKFINAVLDKVSRK 156 K +N VL + R+ Sbjct: 109 EGMVKVVNGVLRNIQRQ 125 >gi|317124745|ref|YP_004098857.1| Fmu (Sun) domain protein [Intrasporangium calvum DSM 43043] gi|315588833|gb|ADU48130.1| Fmu (Sun) domain protein [Intrasporangium calvum DSM 43043] Length = 501 Score = 51.6 bits (123), Expect = 4e-05, Method: Composition-based stats. Identities = 20/111 (18%), Positives = 41/111 (36%), Gaps = 3/111 (2%) Query: 46 TYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILC 105 Y A +L E D + +++G D + + ++D + Sbjct: 52 AYANLALPKLLREKRLHGRDAAFATELVYGATRLSGLYDAITTRA--AGRPVEQIDPAVL 109 Query: 106 SILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRK 156 +R G +++ VP + E V +A F+NAV+ ++S + Sbjct: 110 DSIRLGAHQVLGMR-VPSHAAVDETVALARQVNGSGAAGFVNAVMRRISER 159 >gi|152998580|ref|YP_001364261.1| sun protein [Shewanella baltica OS185] gi|151363198|gb|ABS06198.1| sun protein [Shewanella baltica OS185] Length = 428 Score = 51.6 bits (123), Expect = 4e-05, Method: Composition-based stats. Identities = 27/137 (19%), Positives = 50/137 (36%), Gaps = 15/137 (10%) Query: 20 RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79 R A +A++++ G S + + + + + + D + +GVM Sbjct: 4 RALAAKAIFEVLEKGVSLSVALPDQQKH------------LASGKDKALLAELCYGVMRT 51 Query: 80 KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139 I+ IS CL + I+ +L G +L +P ISE + Sbjct: 52 LPQIEKRISECLAK--PLKGKQRIIHQLLIIGCYQL-YFTRIPSHAAISETAEACRQLKF 108 Query: 140 GDEPKFINAVLDKVSRK 156 K +N VL + R+ Sbjct: 109 EGMVKVVNGVLRNIQRQ 125 >gi|52426258|ref|YP_089395.1| Sun protein [Mannheimia succiniciproducens MBEL55E] gi|52308310|gb|AAU38810.1| Sun protein [Mannheimia succiniciproducens MBEL55E] Length = 470 Score = 51.6 bits (123), Expect = 4e-05, Method: Composition-based stats. Identities = 19/127 (14%), Positives = 47/127 (37%), Gaps = 3/127 (2%) Query: 32 IIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCL 91 + S I+ + + + +++S DL + I GV ++ +I + Sbjct: 31 VRALSARIILQVLDQGKSLSALIPELQSQVKAQDLPLLQEICFGVCRVLPRLEQIIKKLV 90 Query: 92 TEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLD 151 + I+ +L G+ +++ +P + E V + +N VL Sbjct: 91 DK--PLKGKTRIVHCLLLVGLYQILYTR-IPAHAAVDEVVNATSALKSENFRGLVNGVLR 147 Query: 152 KVSRKEE 158 + R+++ Sbjct: 148 RFLREQQ 154 >gi|318040449|ref|ZP_07972405.1| sun protein [Synechococcus sp. CB0101] Length = 454 Score = 51.3 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 24/140 (17%), Positives = 42/140 (30%), Gaps = 14/140 (10%) Query: 20 RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79 R A Q L Q G + + D + +G + + Sbjct: 19 RRLAWQVL-QAVAAGAYADGALEREL-----------GRTSLSPADRGLATELAYGAIRQ 66 Query: 80 KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139 ++ +D + K R L +L G+ +L+ VP +S V +A Sbjct: 67 RRLLDAWLDQL--GKVPAERQPPKLRWLLHIGLYQLLASDRVPPSAAVSTTVELAKRGGL 124 Query: 140 GDEPKFINAVLDKVSRKEEI 159 N +L R+ E Sbjct: 125 ARLAPVANGMLRAFLRRREA 144 >gi|328955666|ref|YP_004372999.1| NusB/RsmB/TIM44 [Coriobacterium glomerans PW2] gi|328455990|gb|AEB07184.1| NusB/RsmB/TIM44 [Coriobacterium glomerans PW2] Length = 470 Score = 51.3 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 20/90 (22%), Positives = 31/90 (34%), Gaps = 5/90 (5%) Query: 65 DLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVE 124 D + + G +D +I L R+ + LR ELI P Sbjct: 45 DAAFAMRLALGATVTSGALDEVIDMHLDH---PRRVSARVRIALRIAAFELIY-LERPPA 100 Query: 125 VIISEYVCIAHDFFYGDEPKFINAVLDKVS 154 V +S+ V + NAVL +V+ Sbjct: 101 VAVSQGVELVGSI-ARSATGLANAVLRRVA 129 >gi|78355064|ref|YP_386513.1| sun protein [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] gi|78217469|gb|ABB36818.1| sun protein [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] Length = 444 Score = 51.3 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 35/157 (22%), Positives = 58/157 (36%), Gaps = 22/157 (14%) Query: 11 KLSHRRG------IARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHV 64 K S RRG AR AA++ L +++ + + D+ L ++ Sbjct: 3 KQSPRRGGVATLPPARGAALEIL----------RDVLDKKREAQSVLDSYLK-DNRLSPQ 51 Query: 65 DLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVE 124 D +++G + + I LI L SRL L + V E++ VPV Sbjct: 52 DAALCTELVYGYLRSEIRISWLIRRFLKPD---SRLPAELLLTMGISVYEILYLQRVPVY 108 Query: 125 VIISEYVC-IAHDFFYGDEPKFINAVLDKVSRKEEIK 160 + V + F G + NAVL + R + Sbjct: 109 ASVDWAVSYVRSRFGTGLS-RLANAVLRSIDRLGDAP 144 >gi|218460752|ref|ZP_03500843.1| RNA methyltransferase - sun protein [Rhizobium etli Kim 5] Length = 466 Score = 51.3 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 24/111 (21%), Positives = 43/111 (38%), Gaps = 10/111 (9%) Query: 63 HVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVP 122 D R I++ + ID I+S L L +L G +++ VP Sbjct: 71 ESDRALVRAILNTTLRHLPRIDAAIASLLES--PLPEGARALHHVLAIGAAQILY-LDVP 127 Query: 123 VEVIISEYVCIAHDFFYGDEPKF---INAVLDKVSRKEE--IKRSGCVSAI 168 + V A+ +F +NAVL ++ R++E + G V+ + Sbjct: 128 DHSAVDLAVEQANQ--DPRNRRFAKLVNAVLRRLGREKEEVLAEIGKVAPM 176 >gi|116254448|ref|YP_770286.1| ribosomal RNA small subunit methyltransferase B [Rhizobium leguminosarum bv. viciae 3841] gi|115259096|emb|CAK10207.1| putative ribosomal RNA small subunit methyltransferase B [Rhizobium leguminosarum bv. viciae 3841] Length = 460 Score = 51.3 bits (122), Expect = 5e-05, Method: Composition-based stats. Identities = 20/99 (20%), Positives = 37/99 (37%), Gaps = 8/99 (8%) Query: 63 HVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVP 122 D R I++ + ID I+ L L +L G +++ VP Sbjct: 65 ESDRALVRAILNTTLRHLPRIDAAIAGLLDS--PLPEGARALHHVLAIGAAQILY-LDVP 121 Query: 123 VEVIISEYVCIAHDFFYGDEPKF---INAVLDKVSRKEE 158 + V A+ +F +NA+L ++ R++E Sbjct: 122 DHSAVDLAVEQANQ--DPRNRRFAKLVNAILRRLGREKE 158 >gi|163797843|ref|ZP_02191788.1| tRNA and rRNA cytosine-C5-methylase [alpha proteobacterium BAL199] gi|159176887|gb|EDP61454.1| tRNA and rRNA cytosine-C5-methylase [alpha proteobacterium BAL199] Length = 436 Score = 51.3 bits (122), Expect = 5e-05, Method: Composition-based stats. Identities = 29/161 (18%), Positives = 57/161 (35%), Gaps = 20/161 (12%) Query: 1 MTIQDNKKDLKLSHRRGIARLAAVQALYQIDIIG-CSTTEIISEYETYRFCADTELDVES 59 M D K+S R + A L++ + E ++ + D + Sbjct: 1 MADTRTVSDNKVSASRSV----AFD-LFRAVLAKRTPLDEALAAH-----------DGLA 44 Query: 60 VYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECH 119 D + R+++ + R H+D L+ +C+ + ++ ILR EL+ Sbjct: 45 KLPERDRGFARLLVATTLRRLGHVDRLVDACIDKPLPTK--AAVVRDILRLAASELL-IL 101 Query: 120 SVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIK 160 V + V + K NAVL ++ R+ + Sbjct: 102 GVAPHAAVDSAVNTVRSRGHEPFVKLTNAVLRRLDREGRGE 142 >gi|220919194|ref|YP_002494498.1| NusB/RsmB/TIM44 [Anaeromyxobacter dehalogenans 2CP-1] gi|219957048|gb|ACL67432.1| NusB/RsmB/TIM44 [Anaeromyxobacter dehalogenans 2CP-1] Length = 455 Score = 51.3 bits (122), Expect = 5e-05, Method: Composition-based stats. Identities = 21/100 (21%), Positives = 39/100 (39%), Gaps = 3/100 (3%) Query: 68 WFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVII 127 +++G + R +D ++ + + LD LR G +L+ P + Sbjct: 51 LATELVYGTLRRALALDAALAPHSRR--ALAELDPAARVALRLGAYQLL-VLGTPAHAAV 107 Query: 128 SEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRSGCVSA 167 E V +A +G ++NAVL +SR + A Sbjct: 108 GETVALAKAVDHGRAAGYVNAVLRSLSRAARFPDPPALEA 147 >gi|118602253|ref|YP_903468.1| sun protein [Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)] gi|118567192|gb|ABL01997.1| 16S rRNA m(5)C-967 methyltransferase [Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)] Length = 421 Score = 51.3 bits (122), Expect = 5e-05, Method: Composition-based stats. Identities = 24/140 (17%), Positives = 54/140 (38%), Gaps = 21/140 (15%) Query: 20 RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79 R A++A+Y + I S + + + D D + ++ G + Sbjct: 7 RFIALEAIYSVIINKKSLS-------AFNYPKDN-----------DTPLIKSLVFGTIRF 48 Query: 80 KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139 ++ ++S L + LD+ ++ G +L+ + + I E V + + Sbjct: 49 YHQLNDIVSKRLKHSFKKEDLDV--HCLMLLGAYQLLYSK-IAIHASIFETVNVVNALNK 105 Query: 140 GDEPKFINAVLDKVSRKEEI 159 +NA+L K+ R ++I Sbjct: 106 PWAKALVNAILRKIDRDKKI 125 >gi|84496642|ref|ZP_00995496.1| putative RNA-binding Sun protein [Janibacter sp. HTCC2649] gi|84383410|gb|EAP99291.1| putative RNA-binding Sun protein [Janibacter sp. HTCC2649] Length = 500 Score = 51.3 bits (122), Expect = 5e-05, Method: Composition-based stats. Identities = 20/92 (21%), Positives = 37/92 (40%), Gaps = 3/92 (3%) Query: 65 DLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVE 124 D + + G + + D +I S S +D + +LR G +L+ VP Sbjct: 72 DAAFATELAFGTLRMQGFYDAVIERAADR--STSTIDSGVLDVLRLGAHQLLGMR-VPTH 128 Query: 125 VIISEYVCIAHDFFYGDEPKFINAVLDKVSRK 156 + V +A F+NAV+ ++S + Sbjct: 129 AAADQTVGLARTVSGAGASGFVNAVMRRISER 160 >gi|298529651|ref|ZP_07017054.1| Fmu (Sun) domain protein [Desulfonatronospira thiodismutans ASO3-1] gi|298511087|gb|EFI34990.1| Fmu (Sun) domain protein [Desulfonatronospira thiodismutans ASO3-1] Length = 417 Score = 50.9 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 22/119 (18%), Positives = 41/119 (34%), Gaps = 5/119 (4%) Query: 37 TTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWS 96 + + + D LD E D + +G + K +D +++ L S Sbjct: 15 VLDALRPGRDLQMVLDRNLDPEMDLR--DRSLATELAYGYLRYKGRLDFVLNCFLK---S 69 Query: 97 FSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSR 155 + L + ++ E+ +P +S V + F +NAVL K R Sbjct: 70 PAGLSGKIRVLMGLAAYEIFFLERIPDYAAVSRAVALTRKRFGSRMSSLVNAVLRKCCR 128 >gi|289705544|ref|ZP_06501936.1| putative ribosomal RNA small subunit methyltransferase B [Micrococcus luteus SK58] gi|289557773|gb|EFD51072.1| putative ribosomal RNA small subunit methyltransferase B [Micrococcus luteus SK58] Length = 543 Score = 50.9 bits (121), Expect = 6e-05, Method: Composition-based stats. Identities = 18/99 (18%), Positives = 39/99 (39%), Gaps = 3/99 (3%) Query: 58 ESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIE 117 ++ D + + +G + D +++ C+ ++D + LR G +L+ Sbjct: 93 QARLDRRDAGFATELAYGTLRGLGLYDAILTRCVDR--PLEKIDPPVLDALRLGAHQLLG 150 Query: 118 CHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRK 156 VP + V + F+NAVL +V+ + Sbjct: 151 MR-VPAHAALDATVSLVRAEIGAGASGFVNAVLRRVAER 188 >gi|271964331|ref|YP_003338527.1| Fmu, rRNA SAM-dependent methyltransferase:Nop2p [Streptosporangium roseum DSM 43021] gi|270507506|gb|ACZ85784.1| Fmu, rRNA SAM-dependent methyltransferase:Nop2p [Streptosporangium roseum DSM 43021] Length = 515 Score = 50.9 bits (121), Expect = 6e-05, Method: Composition-based stats. Identities = 32/139 (23%), Positives = 49/139 (35%), Gaps = 14/139 (10%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 R AR AA L + E + Y L E D + +G Sbjct: 53 RDEARNAAYDLL-----------RAVDERDAYANLLMPALLRERRLSGRDAGLATELAYG 101 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135 + D +I++C + LD L +R GV +L++ VP + V + Sbjct: 102 TLRGLGTYDEVIAACSDR--APEDLDPPLLDAIRLGVHQLLKTR-VPPHAAVGTTVDLVR 158 Query: 136 DFFYGDEPKFINAVLDKVS 154 K+ NAVL KV+ Sbjct: 159 LRVGTGASKYANAVLRKVA 177 >gi|227833013|ref|YP_002834720.1| putative tRNA and rRNA cytosine-C5-methylase [Corynebacterium aurimucosum ATCC 700975] gi|227454029|gb|ACP32782.1| putative tRNA and rRNA cytosine-C5-methylase [Corynebacterium aurimucosum ATCC 700975] Length = 531 Score = 50.9 bits (121), Expect = 6e-05, Method: Composition-based stats. Identities = 27/169 (15%), Positives = 59/169 (34%), Gaps = 24/169 (14%) Query: 6 NKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVE---SVYL 62 N++D + AR V D+ E++ E A+ L + Sbjct: 54 NRRDGHSASFMSAARRCGV------DVPRAVAFEVLQRVEADDAFANLTLPKAVSANNLS 107 Query: 63 HVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVP 122 D + + +G + + +D +I++C + + + + LR G +++ V Sbjct: 108 GRDAAFSTELTYGTLRSEGVLDAVIATCASRG--LEAIAPDVLTALRMGTYQVLYTR-VE 164 Query: 123 VEVIISEYVCIAHDFFYGDEPKFINAV------------LDKVSRKEEI 159 + V + + F N + LDK++ +EE+ Sbjct: 165 AHAAVDTTVRLVEAAGHEKAKGFANGIMRTITRTPAHEWLDKLAPQEEV 213 >gi|123965723|ref|YP_001010804.1| Sun protein (Fmu protein) [Prochlorococcus marinus str. MIT 9515] gi|123200089|gb|ABM71697.1| Sun protein (Fmu protein) [Prochlorococcus marinus str. MIT 9515] Length = 437 Score = 50.9 bits (121), Expect = 6e-05, Method: Composition-based stats. Identities = 18/99 (18%), Positives = 40/99 (40%), Gaps = 2/99 (2%) Query: 60 VYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECH 119 + +D+ + + G + ++ +D I +++ + L +L G+ +L++ Sbjct: 36 EFNSLDIAFITELSFGCIRYRKFLDTWID-HISKLSHQKQ-PPKLRWLLHIGLYQLLKMD 93 Query: 120 SVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEE 158 +P IS V +A +NA+L R E Sbjct: 94 KIPFPAAISSTVEVAKRTDLKGLAGTVNAILRNTVRNIE 132 >gi|152966927|ref|YP_001362711.1| Fmu (Sun) domain protein [Kineococcus radiotolerans SRS30216] gi|151361444|gb|ABS04447.1| Fmu (Sun) domain protein [Kineococcus radiotolerans SRS30216] Length = 486 Score = 50.9 bits (121), Expect = 6e-05, Method: Composition-based stats. Identities = 28/137 (20%), Positives = 53/137 (38%), Gaps = 14/137 (10%) Query: 18 IARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVM 77 +R A + L S + + R D L+ D + + +GV+ Sbjct: 28 ASRKVAYEVL-----RAVSADDAYANLVLPRMLRDRRLNG------RDAAFATELAYGVL 76 Query: 78 DRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDF 137 + D L+++ + + LD + +LR G+ +L+ VP ++ V +A + Sbjct: 77 RGRGTYDALLATLVDR--PLAELDAGVLDVLRMGLHQLLAMR-VPDHAAVATSVALARNV 133 Query: 138 FYGDEPKFINAVLDKVS 154 G INAVL + Sbjct: 134 VGGGPAGLINAVLRSAA 150 >gi|241206925|ref|YP_002978021.1| Fmu (Sun) domain protein [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240860815|gb|ACS58482.1| Fmu (Sun) domain protein [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 460 Score = 50.9 bits (121), Expect = 6e-05, Method: Composition-based stats. Identities = 22/111 (19%), Positives = 43/111 (38%), Gaps = 10/111 (9%) Query: 63 HVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVP 122 D R I++ + ID I+ L L +L G +++ VP Sbjct: 65 ESDRALVRAILNTTLRHLPRIDAAIAGLLDS--PLPEGARALHHVLAIGAAQILY-LDVP 121 Query: 123 VEVIISEYVCIAHDFFYGDEPKF---INAVLDKVSRKEE--IKRSGCVSAI 168 + V A+ +F +NA+L ++ R++E + + G V+ + Sbjct: 122 DHSAVDLAVEQAN--LDPRNRRFAKLVNAILRRLGREKEQVLDQIGKVAPM 170 >gi|262182499|ref|ZP_06041920.1| putative tRNA and rRNA cytosine-C5-methylase [Corynebacterium aurimucosum ATCC 700975] Length = 468 Score = 50.9 bits (121), Expect = 6e-05, Method: Composition-based stats. Identities = 25/158 (15%), Positives = 54/158 (34%), Gaps = 24/158 (15%) Query: 17 GIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVE---SVYLHVDLEWFRVII 73 AR V D+ E++ E A+ L + D + + Sbjct: 2 SAARRCGV------DVPRAVAFEVLQRVEADDAFANLTLPKAVSANNLSGRDAAFSTELT 55 Query: 74 HGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCI 133 +G + + +D +I++C + + + + LR G +++ V + V + Sbjct: 56 YGTLRSEGVLDAVIATCASRG--LEAIAPDVLTALRMGTYQVLYTR-VEAHAAVDTTVRL 112 Query: 134 AHDFFYGDEPKFINAV------------LDKVSRKEEI 159 + F N + LDK++ +EE+ Sbjct: 113 VEAAGHEKAKGFANGIMRTITRTPAHEWLDKLAPQEEV 150 >gi|160915468|ref|ZP_02077679.1| hypothetical protein EUBDOL_01476 [Eubacterium dolichum DSM 3991] gi|158432588|gb|EDP10877.1| hypothetical protein EUBDOL_01476 [Eubacterium dolichum DSM 3991] Length = 415 Score = 50.9 bits (121), Expect = 6e-05, Method: Composition-based stats. Identities = 23/109 (21%), Positives = 41/109 (37%), Gaps = 9/109 (8%) Query: 63 HVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILR-AGVLELIECHSV 121 D I++G + + + S + ++ ++L V +L+ + Sbjct: 34 PKDKALVTQIVYGTLQNYRLVRYQWQSYVKKE------PCKEVALLLDMSVYQLLYMDKM 87 Query: 122 PVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRSGCVSAITQ 170 P +I E V I + +NAVL +V R KR +AI Q Sbjct: 88 PAYAVIDEAVRITKKNIHPRFSALVNAVLRQVERNG--KRELEGNAIEQ 134 >gi|262370763|ref|ZP_06064087.1| 16S rRNA m5C967 SAM-dependent methyltransferase [Acinetobacter johnsonii SH046] gi|262314125|gb|EEY95168.1| 16S rRNA m5C967 SAM-dependent methyltransferase [Acinetobacter johnsonii SH046] Length = 434 Score = 50.5 bits (120), Expect = 7e-05, Method: Composition-based stats. Identities = 25/138 (18%), Positives = 51/138 (36%), Gaps = 25/138 (18%) Query: 21 LAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRK 80 L AVQ G S ++ ++ + D + ++ G + + Sbjct: 22 LLAVQ-------NGQSLASVLQQHMA-------------IVSDKDRALYHELVLGCLRQW 61 Query: 81 QHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYG 140 + + LT+ + ++ + L G+ +L+ C V ISE V A Sbjct: 62 HALKQVTLPLLTK--PLE--NQVVETCLYVGLYQLL-CTRVAAHAAISETVEAAKQLGME 116 Query: 141 DEPKFINAVLDKVSRKEE 158 + +NA+L + +R+ E Sbjct: 117 NLSGVVNAILRRATRETE 134 >gi|310659156|ref|YP_003936877.1| rsmb [Clostridium sticklandii DSM 519] gi|308825934|emb|CBH21972.1| RsmB [Clostridium sticklandii] Length = 444 Score = 50.5 bits (120), Expect = 7e-05, Method: Composition-based stats. Identities = 25/154 (16%), Positives = 55/154 (35%), Gaps = 14/154 (9%) Query: 17 GIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGV 76 AR A +Y + + Y + + ++ + + + +++G Sbjct: 13 NNARKIAYDIIY-----------DVKYNKAYSNISINKAFNKNTIDNREKGFVTELVYGA 61 Query: 77 MDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHD 136 + R ++D I L S+L ++L G +L SV + E V + Sbjct: 62 LSRLIYLDYQIEQFLDM--RASKLSKQAKTVLEMGFYQLEFMDSVSDFASVDESVKLIKK 119 Query: 137 FFYGDEPKFINAVLDKVSRKEEIKRSGCVSAITQ 170 INAV+ K ++ + + + +S + Sbjct: 120 -VDNRSAGIINAVMRKRVKEGKAEYTDKISDKAK 152 >gi|190893964|ref|YP_001980506.1| RNA methyltransferase - sun protein [Rhizobium etli CIAT 652] gi|190699243|gb|ACE93328.1| probable RNA methyltransferase - sun protein [Rhizobium etli CIAT 652] Length = 464 Score = 50.5 bits (120), Expect = 8e-05, Method: Composition-based stats. Identities = 21/99 (21%), Positives = 38/99 (38%), Gaps = 8/99 (8%) Query: 63 HVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVP 122 D R I++ + ID I+S L L +L G +++ VP Sbjct: 69 ESDRALVRAILNTTLRHLPRIDAAIASLLES--PLPEGARALHHVLSIGAAQILY-LDVP 125 Query: 123 VEVIISEYVCIAHDFFYGDEPKF---INAVLDKVSRKEE 158 + V A+ +F +NAVL ++ R+++ Sbjct: 126 DHSAVDLAVEQANQ--DPRNRRFAKLVNAVLRRLGREKD 162 >gi|297184029|gb|ADI20149.1| tRNA and rRNA cytosine-c5-methylases [uncultured alpha proteobacterium EB080_L06A09] Length = 430 Score = 50.5 bits (120), Expect = 8e-05, Method: Composition-based stats. Identities = 27/139 (19%), Positives = 50/139 (35%), Gaps = 17/139 (12%) Query: 19 ARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMD 78 AR AAV+ L ++ E+ + E + + + + + Sbjct: 8 AREAAVRLL----------HAVLLEHRLLIDIVNGEDSLLIDLEPSERARAQSLAMTTLR 57 Query: 79 RKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH-DF 137 ID+++ LT+K F+ L +ILR E++ + + V +A Sbjct: 58 NLGPIDIVLKKYLTKKPPFA-----LLNILRVSSAEML-VDGIAAHAAVDSAVTMAKRKH 111 Query: 138 FYGDEPKFINAVLDKVSRK 156 NAVL KV+ + Sbjct: 112 KTAHLKDLTNAVLRKVASE 130 >gi|220903300|ref|YP_002478612.1| NusB/RsmB/TIM44 [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] gi|219867599|gb|ACL47934.1| NusB/RsmB/TIM44 [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] Length = 526 Score = 50.5 bits (120), Expect = 8e-05, Method: Composition-based stats. Identities = 19/94 (20%), Positives = 33/94 (35%), Gaps = 3/94 (3%) Query: 65 DLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVE 124 D +++G + + ++ L+ L R IL + V L+ VP Sbjct: 72 DRALCTELVYGCLRTELRLNFLLGRVLPRPQGLPRPMQILLA---LAVYGLLFQDKVPSH 128 Query: 125 VIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEE 158 ++ E V A F + N L + R E Sbjct: 129 AVVYEAVEQARALFGQGLARVANGALRSLQRMGE 162 >gi|119385444|ref|YP_916500.1| Fmu (Sun) domain-containing protein [Paracoccus denitrificans PD1222] gi|119375211|gb|ABL70804.1| Fmu (Sun) domain protein [Paracoccus denitrificans PD1222] Length = 535 Score = 50.5 bits (120), Expect = 8e-05, Method: Composition-based stats. Identities = 20/86 (23%), Positives = 35/86 (40%), Gaps = 8/86 (9%) Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135 V+ R +DLL++ L + I+ ILR +E++ P ++ V +A Sbjct: 167 VLRRADRVDLLLAPMLARRPRPE----IMR-ILRLAAVEMLALGEAPHG-AVNAAVALAR 220 Query: 136 DFF--YGDEPKFINAVLDKVSRKEEI 159 +NAVL K++ E Sbjct: 221 ASGRKGQAAAGMVNAVLRKIAGAAEA 246 >gi|239904671|ref|YP_002951409.1| rRNA (cytosine-C(5)-)-methyltransferase [Desulfovibrio magneticus RS-1] gi|239794534|dbj|BAH73523.1| rRNA (cytosine-C(5)-)-methyltransferase [Desulfovibrio magneticus RS-1] Length = 477 Score = 50.5 bits (120), Expect = 8e-05, Method: Composition-based stats. Identities = 17/98 (17%), Positives = 36/98 (36%), Gaps = 3/98 (3%) Query: 57 VESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELI 116 +S D +++G + +D +++ L + + + + + IL E++ Sbjct: 76 ADSTLDPRDRGLATELVYGYLRLCGRLDYILAQFLK---NPTAVPLAVRRILGLAAYEIL 132 Query: 117 ECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVS 154 C VP + V NAVL +V+ Sbjct: 133 HCAKVPAYASVDWAVSAVRKAGGKGLSGMANAVLRRVA 170 >gi|110004340|emb|CAK98678.1| putative ribosomal rna small subunit methyltransferase protein [Spiroplasma citri] Length = 423 Score = 50.5 bits (120), Expect = 8e-05, Method: Composition-based stats. Identities = 22/136 (16%), Positives = 50/136 (36%), Gaps = 15/136 (11%) Query: 18 IARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVM 77 AR A +I +I ++ + ++ ++ D I++G + Sbjct: 2 QAREVA------WNI----LWKIFAKNKFSNHLLSNIVEQNDNFIDQDKTLIYRIVYGTL 51 Query: 78 DRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDF 137 K +++ + + + K + +L +L + + +P I++E V I+ Sbjct: 52 KNKLYLEYIANQFIESKKTNQKL----QILLWMSIYQFRFLDRIPNYAIVNEAVNISKSV 107 Query: 138 FYGDEPKFINAVLDKV 153 FIN L K+ Sbjct: 108 S-PKYAGFINTTLKKI 122 >gi|83594989|ref|YP_428741.1| tRNA and rRNA cytosine-C5-methylase [Rhodospirillum rubrum ATCC 11170] gi|83577903|gb|ABC24454.1| tRNA and rRNA cytosine-C5-methylase [Rhodospirillum rubrum ATCC 11170] Length = 438 Score = 50.5 bits (120), Expect = 8e-05, Method: Composition-based stats. Identities = 24/117 (20%), Positives = 45/117 (38%), Gaps = 4/117 (3%) Query: 39 EIISEYETYRFCADTELDVESVYLHV-DLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSF 97 +++S + D D + L D + R++ + R ++ +I + L Sbjct: 14 DLLSAVLDHGRPLDDVFDAATRKLEPRDRAFARLLAATTLRRMGRLEKVIKTFLDR--PL 71 Query: 98 SRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVS 154 R + ILR G +++ P ++ V +A INAVL KV+ Sbjct: 72 PRRAVGAKHILRLGAAQMLF-LDTPPHAAVATSVDVARVRRLAPYAGLINAVLRKVA 127 >gi|291288639|ref|YP_003505455.1| Fmu (Sun) domain protein [Denitrovibrio acetiphilus DSM 12809] gi|290885799|gb|ADD69499.1| Fmu (Sun) domain protein [Denitrovibrio acetiphilus DSM 12809] Length = 379 Score = 50.5 bits (120), Expect = 8e-05, Method: Composition-based stats. Identities = 20/116 (17%), Positives = 42/116 (36%), Gaps = 11/116 (9%) Query: 44 YETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLD-M 102 ++ + L + + +R I I+ + TE + Sbjct: 10 FDVLKSYYKGVLREDYFEDSAEQRLYRKIYFETFRHLGFIEKCLDKLYTE------MPGP 63 Query: 103 ILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEE 158 L + L G +++ +P ++E V + ++ F+NAVL V R++E Sbjct: 64 ELRAALALGTCQILFMDDIPDYAAVNESVILVQM----NKRSFVNAVLRNVGRRKE 115 >gi|298346829|ref|YP_003719516.1| 16S rRNA m(5)C 967 methyltransferase [Mobiluncus curtisii ATCC 43063] gi|298236890|gb|ADI68022.1| 16S rRNA m(5)C 967 methyltransferase [Mobiluncus curtisii ATCC 43063] Length = 470 Score = 50.5 bits (120), Expect = 9e-05, Method: Composition-based stats. Identities = 23/113 (20%), Positives = 44/113 (38%), Gaps = 3/113 (2%) Query: 41 ISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRL 100 + + Y L + D + +++G + + D +I L + L Sbjct: 4 VDQDHAYANLVLPGLIERARLHRRDAAFATELVYGTLRLQGRYDAIIG--LLSDRDIAAL 61 Query: 101 DMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKV 153 D L ++LR G+ ++++ V + V +A D +NAVL KV Sbjct: 62 DSELVTVLRMGIHQILQMR-VEDYAAVDTMVDLARDRLSAGPAGMVNAVLRKV 113 >gi|297622450|ref|YP_003703884.1| Fmu (Sun) domain-containing protein [Truepera radiovictrix DSM 17093] gi|297163630|gb|ADI13341.1| Fmu (Sun) domain protein [Truepera radiovictrix DSM 17093] Length = 421 Score = 50.1 bits (119), Expect = 1e-04, Method: Composition-based stats. Identities = 26/140 (18%), Positives = 54/140 (38%), Gaps = 18/140 (12%) Query: 18 IARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVM 77 AR A+ L ++ G ++S+ D + +++G + Sbjct: 2 TARETALSILRRVH-RGAFAAPVLSDALAR-----------GGLSAADRGFVTHLVYGSL 49 Query: 78 DRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDF 137 + +D + L + ++L + LR G E + P +++E+V I Sbjct: 50 RLELALDAQLRPLLQ---NPAKLPPGVLDALRLGAFEALYSG-TPRRAVVNEWVAIVKR- 104 Query: 138 FYGDEPKFINAVLDKV-SRK 156 +G +NAVL +V +R+ Sbjct: 105 RHGRLAGLVNAVLRRVEARE 124 >gi|11499905|ref|NP_071149.1| fmu and fmv protein [Archaeoglobus fulgidus DSM 4304] gi|2648195|gb|AAB88932.1| fmu and fmv protein [Archaeoglobus fulgidus DSM 4304] Length = 437 Score = 50.1 bits (119), Expect = 1e-04, Method: Composition-based stats. Identities = 25/94 (26%), Positives = 40/94 (42%), Gaps = 8/94 (8%) Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135 + R ID + S L + F LD ++LR V E+ V + V IA Sbjct: 57 TLKRLNAIDYFLKSTLKK---FDGLDPFTRNLLRIAVYEMKY-KGVHPALATDSAVRIAR 112 Query: 136 DFFYGDEPKFINAVLDKVSRKEEIKRSGCVSAIT 169 + + +NAVL KV K +I+ G + ++ Sbjct: 113 ERG---KASLVNAVLRKV-EKLDIQAEGRLKELS 142 >gi|113968373|ref|YP_732166.1| sun protein [Shewanella sp. MR-4] gi|113883057|gb|ABI37109.1| sun protein [Shewanella sp. MR-4] Length = 429 Score = 50.1 bits (119), Expect = 1e-04, Method: Composition-based stats. Identities = 26/137 (18%), Positives = 50/137 (36%), Gaps = 15/137 (10%) Query: 20 RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79 R A +A++++ G S + + E + + + D + +GVM Sbjct: 5 RALAAKAIFEVLEKGVSLSVALPEQQKH------------LASGKDKALLAELCYGVMRT 52 Query: 80 KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139 I+ ++ CL + I+ +L G +L +P ISE + Sbjct: 53 LPQIEKRVAECLAK--PLKGKQRIIHQLLIVGCYQL-YFTRIPSHAAISETAEACRQLKF 109 Query: 140 GDEPKFINAVLDKVSRK 156 K +N VL + R+ Sbjct: 110 EGMVKVVNGVLRNIQRQ 126 >gi|117918492|ref|YP_867684.1| sun protein [Shewanella sp. ANA-3] gi|117610824|gb|ABK46278.1| sun protein [Shewanella sp. ANA-3] Length = 429 Score = 50.1 bits (119), Expect = 1e-04, Method: Composition-based stats. Identities = 26/137 (18%), Positives = 50/137 (36%), Gaps = 15/137 (10%) Query: 20 RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79 R A +A++++ G S + + E + + + D + +GVM Sbjct: 5 RALAAKAIFEVLEKGVSLSVALPEQQKH------------LASGKDKALLAELCYGVMRT 52 Query: 80 KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139 I+ ++ CL + I+ +L G +L +P ISE + Sbjct: 53 LPQIEKRVAECLAK--PLKGKQRIIHQLLIVGCYQL-YFTRIPSHAAISETAEACRQLKF 109 Query: 140 GDEPKFINAVLDKVSRK 156 K +N VL + R+ Sbjct: 110 EGMVKVVNGVLRNIQRQ 126 >gi|120596855|ref|YP_961429.1| sun protein [Shewanella sp. W3-18-1] gi|120556948|gb|ABM22875.1| sun protein [Shewanella sp. W3-18-1] Length = 429 Score = 50.1 bits (119), Expect = 1e-04, Method: Composition-based stats. Identities = 28/137 (20%), Positives = 50/137 (36%), Gaps = 15/137 (10%) Query: 20 RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79 R A +A++++ G S + + + + + + D I +GVM Sbjct: 4 RALAAKAIFEVLEKGVSLSVALPDQQKH------------LASGKDKALLAEICYGVMRT 51 Query: 80 KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139 I+ IS CL + I+ +L G +L +P ISE + Sbjct: 52 LPQIEKRISECLEK--PLKGKQRIIHQLLIVGCYQL-YFTRIPSHAAISETAEACRQLKF 108 Query: 140 GDEPKFINAVLDKVSRK 156 K +N VL + R+ Sbjct: 109 EGMVKVVNGVLRNIQRQ 125 >gi|114045538|ref|YP_736088.1| sun protein [Shewanella sp. MR-7] gi|113886980|gb|ABI41031.1| sun protein [Shewanella sp. MR-7] Length = 429 Score = 50.1 bits (119), Expect = 1e-04, Method: Composition-based stats. Identities = 26/137 (18%), Positives = 50/137 (36%), Gaps = 15/137 (10%) Query: 20 RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79 R A +A++++ G S + + E + + + D + +GVM Sbjct: 5 RALAAKAIFEVLEKGVSLSVALPEQQKH------------LASGKDKALLAELCYGVMRT 52 Query: 80 KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139 I+ ++ CL + I+ +L G +L +P ISE + Sbjct: 53 LPQIEKRVAECLAK--PLKGKQRIIHQLLIVGCYQL-YFTRIPSHAAISETAEACRQLKF 109 Query: 140 GDEPKFINAVLDKVSRK 156 K +N VL + R+ Sbjct: 110 EGMVKVVNGVLRNIQRQ 126 >gi|303326115|ref|ZP_07356558.1| sun protein [Desulfovibrio sp. 3_1_syn3] gi|302864031|gb|EFL86962.1| sun protein [Desulfovibrio sp. 3_1_syn3] Length = 464 Score = 50.1 bits (119), Expect = 1e-04, Method: Composition-based stats. Identities = 23/123 (18%), Positives = 41/123 (33%), Gaps = 5/123 (4%) Query: 33 IGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLT 92 G S E +++ + +V + +++G + + I L+ L Sbjct: 31 SGLSAQEALADALSGPLGEG--GKAVAVLPQQERHLCSELVYGCLRAEIRIAYLLGRVLP 88 Query: 93 EKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDK 152 + RL + L IL V L+ VP + V A F + N L Sbjct: 89 K---PERLPLPLRHILELAVYALLFQERVPDHAAVHSAVAQAERLFGRSLARVTNGALRS 145 Query: 153 VSR 155 + R Sbjct: 146 IQR 148 >gi|20093882|ref|NP_613729.1| tRNA/rRNA cytosine-C5-methylase [Methanopyrus kandleri AV19] gi|19886817|gb|AAM01659.1| tRNA/rRNA cytosine-C5-methylase [Methanopyrus kandleri AV19] Length = 452 Score = 50.1 bits (119), Expect = 1e-04, Method: Composition-based stats. Identities = 18/74 (24%), Positives = 31/74 (41%), Gaps = 2/74 (2%) Query: 77 MDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHD 136 M R + +D + + + LD + + LR G E+ V + +E V I + Sbjct: 54 MKRLRTVDAFLEATI-RNAKLFDLDPWVRNALRVGTFEMKFN-DVKPAIATNEAVKIVVE 111 Query: 137 FFYGDEPKFINAVL 150 +F+NAVL Sbjct: 112 CVGEGPARFVNAVL 125 >gi|295130755|ref|YP_003581418.1| putative ribosomal RNA small subunit methyltransferase B [Propionibacterium acnes SK137] gi|291377004|gb|ADE00859.1| putative ribosomal RNA small subunit methyltransferase B [Propionibacterium acnes SK137] Length = 458 Score = 50.1 bits (119), Expect = 1e-04, Method: Composition-based stats. Identities = 25/156 (16%), Positives = 55/156 (35%), Gaps = 22/156 (14%) Query: 1 MTIQDNKKDLKLSHRRGI--ARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVE 58 MT + ++K RR AR A AL ++ G ++++ Sbjct: 1 MTQRVHQK------RRKADPARRLAYSALLAVETHGAYANLALADHLR-----------A 43 Query: 59 SVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIEC 118 + D + ++ G D +I + + ++L + +LR +++ Sbjct: 44 AKLTGRDAAFATELVDGTSRGTGTWDRIIEAASCR--APAKLQPGVRVVLRMAAHQILAM 101 Query: 119 HSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVS 154 VP ++ V +A +NA+ ++S Sbjct: 102 R-VPTRAAVASSVDLAGQVIGERVTGLVNAISRRIS 136 >gi|113460188|ref|YP_718245.1| ribosomal RNA small subunit methyltransferase B [Haemophilus somnus 129PT] gi|112822231|gb|ABI24320.1| 16S rRNA m(5)C-967 methyltransferase [Haemophilus somnus 129PT] Length = 462 Score = 49.7 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 24/142 (16%), Positives = 51/142 (35%), Gaps = 16/142 (11%) Query: 17 GIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGV 76 R+ A + + Q+ + G S + ++ E +S D + I G+ Sbjct: 22 RSVRVLAAEVILQVLVQGKSLSTLLPE-------------QQSAVKPQDFPLLQEICFGI 68 Query: 77 MDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHD 136 ++ +I L + I+ +L G+ +++ +P + E V Sbjct: 69 CRVLPRLERIIQLLLDK--PLKGKTRIVHCLLLVGLYQILYTR-IPAHAAVDEVVSATKS 125 Query: 137 FFYGDEPKFINAVLDKVSRKEE 158 +NAVL + R++E Sbjct: 126 LKSDSFRGLLNAVLRRFLREQE 147 >gi|327330430|gb|EGE72179.1| sun protein [Propionibacterium acnes HL097PA1] Length = 458 Score = 49.7 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 25/156 (16%), Positives = 55/156 (35%), Gaps = 22/156 (14%) Query: 1 MTIQDNKKDLKLSHRRGI--ARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVE 58 MT + ++K RR AR A AL ++ G ++++ Sbjct: 1 MTQRVHQK------RRKADPARRLAYSALLAVETHGAYANLALADHLR-----------A 43 Query: 59 SVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIEC 118 + D + ++ G D +I + + ++L + +LR +++ Sbjct: 44 AKLTGRDAAFATELVDGTSRGTGTWDRIIEAASCR--APAKLQPGVRVVLRMAAHQILAM 101 Query: 119 HSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVS 154 VP ++ V +A +NA+ ++S Sbjct: 102 R-VPTRAAVASSVDLAGQVIGERVTGLVNAISRRIS 136 >gi|297184252|gb|ADI20370.1| tRNA and rRNA cytosine-c5-methylases [uncultured alpha proteobacterium EB080_L27A02] Length = 430 Score = 49.7 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 26/139 (18%), Positives = 48/139 (34%), Gaps = 17/139 (12%) Query: 19 ARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMD 78 AR AAV+ L ++ E + E + + + + + Sbjct: 8 AREAAVRLL----------HAVLLERRLLIDIVNGEDSLLIDLEPSERARAQSLAMTTLR 57 Query: 79 RKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH-DF 137 ID ++ LT++ F+ L +ILR E++ + + V +A Sbjct: 58 NLGPIDFVLQKYLTKQTPFA-----LLNILRVSAAEML-VDGIAAHAAVDSAVTMAKRRH 111 Query: 138 FYGDEPKFINAVLDKVSRK 156 NAVL KV+ + Sbjct: 112 KTAHLKDLANAVLRKVASE 130 >gi|170718224|ref|YP_001785246.1| sun protein [Haemophilus somnus 2336] gi|168826353|gb|ACA31724.1| sun protein [Haemophilus somnus 2336] Length = 462 Score = 49.7 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 24/142 (16%), Positives = 51/142 (35%), Gaps = 16/142 (11%) Query: 17 GIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGV 76 R+ A + + Q+ + G S + ++ E +S D + I G+ Sbjct: 22 RSVRVLAAEVILQVLVQGKSLSTLLPE-------------QQSAVKPQDFPLLQEICFGI 68 Query: 77 MDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHD 136 ++ +I L + I+ +L G+ +++ +P + E V Sbjct: 69 CRVLPRLERIIQLLLDK--PLKGKTRIVHCLLLVGLYQILYTR-IPAHAAVDEVVSATKS 125 Query: 137 FFYGDEPKFINAVLDKVSRKEE 158 +NAVL + R++E Sbjct: 126 LKSDSFRGLLNAVLRRFLREQE 147 >gi|50842676|ref|YP_055903.1| tRNA/rRNA cytosine-C5-methylase [Propionibacterium acnes KPA171202] gi|289428602|ref|ZP_06430286.1| putative ribosomal RNA small subunit methyltransferase B [Propionibacterium acnes J165] gi|50840278|gb|AAT82945.1| tRNA/rRNA cytosine-C5-methylase [Propionibacterium acnes KPA171202] gi|289158296|gb|EFD06515.1| putative ribosomal RNA small subunit methyltransferase B [Propionibacterium acnes J165] gi|313764281|gb|EFS35645.1| putative ribosomal RNA small subunit methyltransferase B [Propionibacterium acnes HL013PA1] gi|313772001|gb|EFS37967.1| putative ribosomal RNA small subunit methyltransferase B [Propionibacterium acnes HL074PA1] gi|313802083|gb|EFS43317.1| putative ribosomal RNA small subunit methyltransferase B [Propionibacterium acnes HL110PA2] gi|313807694|gb|EFS46181.1| putative ribosomal RNA small subunit methyltransferase B [Propionibacterium acnes HL087PA2] gi|313810201|gb|EFS47922.1| putative ribosomal RNA small subunit methyltransferase B [Propionibacterium acnes HL083PA1] gi|313812771|gb|EFS50485.1| putative ribosomal RNA small subunit methyltransferase B [Propionibacterium acnes HL025PA1] gi|313816188|gb|EFS53902.1| putative ribosomal RNA small subunit methyltransferase B [Propionibacterium acnes HL059PA1] gi|313818731|gb|EFS56445.1| putative ribosomal RNA small subunit methyltransferase B [Propionibacterium acnes HL046PA2] gi|313820501|gb|EFS58215.1| putative ribosomal RNA small subunit methyltransferase B [Propionibacterium acnes HL036PA1] gi|313822693|gb|EFS60407.1| putative ribosomal RNA small subunit methyltransferase B [Propionibacterium acnes HL036PA2] gi|313825373|gb|EFS63087.1| putative ribosomal RNA small subunit methyltransferase B [Propionibacterium acnes HL063PA1] gi|313827669|gb|EFS65383.1| putative ribosomal RNA small subunit methyltransferase B [Propionibacterium acnes HL063PA2] gi|313830532|gb|EFS68246.1| putative ribosomal RNA small subunit methyltransferase B [Propionibacterium acnes HL007PA1] gi|313833568|gb|EFS71282.1| putative ribosomal RNA small subunit methyltransferase B [Propionibacterium acnes HL056PA1] gi|313838904|gb|EFS76618.1| putative ribosomal RNA small subunit methyltransferase B [Propionibacterium acnes HL086PA1] gi|314915270|gb|EFS79101.1| putative ribosomal RNA small subunit methyltransferase B [Propionibacterium acnes HL005PA4] gi|314918180|gb|EFS82011.1| putative ribosomal RNA small subunit methyltransferase B [Propionibacterium acnes HL050PA1] gi|314920256|gb|EFS84087.1| putative ribosomal RNA small subunit methyltransferase B [Propionibacterium acnes HL050PA3] gi|314925043|gb|EFS88874.1| putative ribosomal RNA small subunit methyltransferase B [Propionibacterium acnes HL036PA3] gi|314931779|gb|EFS95610.1| putative ribosomal RNA small subunit methyltransferase B [Propionibacterium acnes HL067PA1] gi|314955581|gb|EFS99982.1| putative ribosomal RNA small subunit methyltransferase B [Propionibacterium acnes HL027PA1] gi|314958076|gb|EFT02179.1| putative ribosomal RNA small subunit methyltransferase B [Propionibacterium acnes HL002PA1] gi|314960353|gb|EFT04455.1| putative ribosomal RNA small subunit methyltransferase B [Propionibacterium acnes HL002PA2] gi|314962623|gb|EFT06723.1| putative ribosomal RNA small subunit methyltransferase B [Propionibacterium acnes HL082PA1] gi|314967512|gb|EFT11611.1| putative ribosomal RNA small subunit methyltransferase B [Propionibacterium acnes HL037PA1] gi|314973532|gb|EFT17628.1| putative ribosomal RNA small subunit methyltransferase B [Propionibacterium acnes HL053PA1] gi|314976212|gb|EFT20307.1| putative ribosomal RNA small subunit methyltransferase B [Propionibacterium acnes HL045PA1] gi|314978627|gb|EFT22721.1| putative ribosomal RNA small subunit methyltransferase B [Propionibacterium acnes HL072PA2] gi|314983766|gb|EFT27858.1| putative ribosomal RNA small subunit methyltransferase B [Propionibacterium acnes HL005PA1] gi|314989757|gb|EFT33848.1| putative ribosomal RNA small subunit methyltransferase B [Propionibacterium acnes HL005PA3] gi|315077839|gb|EFT49890.1| putative ribosomal RNA small subunit methyltransferase B [Propionibacterium acnes HL053PA2] gi|315080464|gb|EFT52440.1| putative ribosomal RNA small subunit methyltransferase B [Propionibacterium acnes HL078PA1] gi|315084135|gb|EFT56111.1| putative ribosomal RNA small subunit methyltransferase B [Propionibacterium acnes HL027PA2] gi|315085478|gb|EFT57454.1| putative ribosomal RNA small subunit methyltransferase B [Propionibacterium acnes HL002PA3] gi|315088465|gb|EFT60441.1| putative ribosomal RNA small subunit methyltransferase B [Propionibacterium acnes HL072PA1] gi|315096079|gb|EFT68055.1| putative ribosomal RNA small subunit methyltransferase B [Propionibacterium acnes HL038PA1] gi|315098708|gb|EFT70684.1| putative ribosomal RNA small subunit methyltransferase B [Propionibacterium acnes HL059PA2] gi|315101523|gb|EFT73499.1| putative ribosomal RNA small subunit methyltransferase B [Propionibacterium acnes HL046PA1] gi|315105750|gb|EFT77726.1| putative ribosomal RNA small subunit methyltransferase B [Propionibacterium acnes HL030PA1] gi|315108670|gb|EFT80646.1| putative ribosomal RNA small subunit methyltransferase B [Propionibacterium acnes HL030PA2] gi|327326359|gb|EGE68149.1| sun protein [Propionibacterium acnes HL096PA2] gi|327331766|gb|EGE73503.1| sun protein [Propionibacterium acnes HL096PA3] gi|327443543|gb|EGE90197.1| putative ribosomal RNA small subunit methyltransferase B [Propionibacterium acnes HL013PA2] gi|327445747|gb|EGE92401.1| putative ribosomal RNA small subunit methyltransferase B [Propionibacterium acnes HL043PA2] gi|327448270|gb|EGE94924.1| putative ribosomal RNA small subunit methyltransferase B [Propionibacterium acnes HL043PA1] gi|327450608|gb|EGE97262.1| putative ribosomal RNA small subunit methyltransferase B [Propionibacterium acnes HL087PA3] gi|327454053|gb|EGF00708.1| putative ribosomal RNA small subunit methyltransferase B [Propionibacterium acnes HL083PA2] gi|328753311|gb|EGF66927.1| putative ribosomal RNA small subunit methyltransferase B [Propionibacterium acnes HL025PA2] gi|328754026|gb|EGF67642.1| putative ribosomal RNA small subunit methyltransferase B [Propionibacterium acnes HL087PA1] gi|328754754|gb|EGF68370.1| putative ribosomal RNA small subunit methyltransferase B [Propionibacterium acnes HL020PA1] gi|328760679|gb|EGF74245.1| sun protein [Propionibacterium acnes HL099PA1] gi|332675599|gb|AEE72415.1| tRNA/rRNA cytosine-C5-methylase [Propionibacterium acnes 266] Length = 458 Score = 49.7 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 25/156 (16%), Positives = 55/156 (35%), Gaps = 22/156 (14%) Query: 1 MTIQDNKKDLKLSHRRGI--ARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVE 58 MT + ++K RR AR A AL ++ G ++++ Sbjct: 1 MTQRVHQK------RRKADPARRLAYSALLAVETHGAYANLALADHLR-----------A 43 Query: 59 SVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIEC 118 + D + ++ G D +I + + ++L + +LR +++ Sbjct: 44 AKLTGRDAAFATELVDGTSRGTGTWDRIIEAASCR--APAKLQPGVRVVLRMAAHQILAM 101 Query: 119 HSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVS 154 VP ++ V +A +NA+ ++S Sbjct: 102 R-VPTRAAVASSVDLAGQVIGERVTGLVNAISRRIS 136 >gi|218509188|ref|ZP_03507066.1| probable RNA methyltransferase - sun protein [Rhizobium etli Brasil 5] Length = 250 Score = 49.7 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 23/111 (20%), Positives = 43/111 (38%), Gaps = 10/111 (9%) Query: 63 HVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVP 122 D R I++ + ID I+S L L +L G +++ VP Sbjct: 71 ESDRALVRAILNTTLRHLPRIDAAIASLLES--PLPEGARALHHVLSIGAAQILY-LDVP 127 Query: 123 VEVIISEYVCIAHDFFYGDEPKF---INAVLDKVSRKEE--IKRSGCVSAI 168 + V A+ +F +NAVL ++ R+++ + G V+ + Sbjct: 128 DHSAVDLAVEQANQ--DPRNRRFAKLVNAVLRRLGREKDAVLAEIGKVAPM 176 >gi|262282216|ref|ZP_06059985.1| ribosomal RNA small subunit methyltransferase B [Streptococcus sp. 2_1_36FAA] gi|262262670|gb|EEY81367.1| ribosomal RNA small subunit methyltransferase B [Streptococcus sp. 2_1_36FAA] Length = 437 Score = 49.7 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 30/147 (20%), Positives = 59/147 (40%), Gaps = 19/147 (12%) Query: 12 LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71 + RR AR A++ L E+ + + A + + D Sbjct: 1 METRRKSARQVALEVL----------EEVFDQ-GAFSNIALNKALKKVQLSQQDKSLVTE 49 Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131 +++G + RK ++ +S L E +LD L +L + +++ +P +I E V Sbjct: 50 LVYGTVARKLTLEWYLS-HLIEDR--DKLDSWLYILLLLSLYQMLYLDKIPNHALIHEAV 106 Query: 132 CIAH--DFFYGDEPKFINAVLDKVSRK 156 +A KF+NA+L ++ R+ Sbjct: 107 ELAKKRKLGSD---KFVNAILRRIERE 130 >gi|289425301|ref|ZP_06427078.1| putative ribosomal RNA small subunit methyltransferase B [Propionibacterium acnes SK187] gi|289154279|gb|EFD02967.1| putative ribosomal RNA small subunit methyltransferase B [Propionibacterium acnes SK187] Length = 458 Score = 49.7 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 25/156 (16%), Positives = 55/156 (35%), Gaps = 22/156 (14%) Query: 1 MTIQDNKKDLKLSHRRGI--ARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVE 58 MT + ++K RR AR A AL ++ G ++++ Sbjct: 1 MTQRVHQK------RRKADPARRLAYSALLAVETHGAYANLALADHLR-----------A 43 Query: 59 SVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIEC 118 + D + ++ G D +I + + ++L + +LR +++ Sbjct: 44 AKLTGRDAAFATELVDGTSRGTGTWDRIIEAASCR--APAKLQPGVRVVLRMAAHQILAM 101 Query: 119 HSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVS 154 VP ++ V +A +NA+ ++S Sbjct: 102 R-VPTRAAVASSVDLAGQVIGERVTGLVNAISRRIS 136 >gi|157149881|ref|YP_001449914.1| sun protein [Streptococcus gordonii str. Challis substr. CH1] gi|157074675|gb|ABV09358.1| sun protein [Streptococcus gordonii str. Challis substr. CH1] Length = 437 Score = 49.7 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 30/147 (20%), Positives = 59/147 (40%), Gaps = 19/147 (12%) Query: 12 LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71 + RR AR A++ L E+ + + A + + D Sbjct: 1 METRRKSARQVALEVL----------EEVFDQ-GAFSNIALNKALKKVQLSQQDKSLVTE 49 Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131 +++G + RK ++ +S L E +LD L +L + +++ +P +I E V Sbjct: 50 LVYGTVARKLTLEWYLS-HLIEDR--DKLDSWLYILLLLSLYQMLYLDKIPNHALIHEAV 106 Query: 132 CIAH--DFFYGDEPKFINAVLDKVSRK 156 +A KF+NA+L ++ R+ Sbjct: 107 ELAKKRKLGSD---KFVNAILRRIERE 130 >gi|33239874|ref|NP_874816.1| tRNA and rRNA cytosine-C5-methylase [Prochlorococcus marinus subsp. marinus str. CCMP1375] gi|33237400|gb|AAP99468.1| tRNA and rRNA cytosine-C5-methylase [Prochlorococcus marinus subsp. marinus str. CCMP1375] Length = 438 Score = 49.7 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 19/106 (17%), Positives = 42/106 (39%), Gaps = 4/106 (3%) Query: 64 VDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPV 123 D + G + ++ +D I CL + S + +L +L G+ ++ +PV Sbjct: 41 ADRALATELACGAIRQRLVLDCWID-CLAKV-SAEKQPPLLRWLLHVGLYQIFYMDRIPV 98 Query: 124 EVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKR--SGCVSA 167 ++ V +A +NA+L + R ++ + G + Sbjct: 99 SAAVNTTVELAKKKNLKSLAPVVNAILREAIRARDLGKELPGLIEP 144 >gi|114769580|ref|ZP_01447190.1| ribosomal RNA small subunit methyltransferase B, putative [alpha proteobacterium HTCC2255] gi|114549285|gb|EAU52167.1| ribosomal RNA small subunit methyltransferase B, putative [alpha proteobacterium HTCC2255] gi|297183946|gb|ADI20067.1| hypothetical protein [uncultured alpha proteobacterium EB080_L11F12] Length = 430 Score = 49.7 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 26/139 (18%), Positives = 48/139 (34%), Gaps = 17/139 (12%) Query: 19 ARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMD 78 AR AAV+ L ++ E + E + + + + + Sbjct: 8 AREAAVRLL----------HAVLLERRLLIDIVNGEDSLLIDLEPSERARAQSLAMTTLR 57 Query: 79 RKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH-DF 137 ID ++ LT++ F+ L +ILR E++ + + V +A Sbjct: 58 NLGPIDFVLQKYLTKQTPFA-----LLNILRVSAAEML-VDGIAAHAAVDSAVTMAKRRH 111 Query: 138 FYGDEPKFINAVLDKVSRK 156 NAVL KV+ + Sbjct: 112 KTAHLKDLANAVLRKVASE 130 >gi|33860983|ref|NP_892544.1| Sun protein (Fmu protein) [Prochlorococcus marinus subsp. pastoris str. CCMP1986] gi|33639715|emb|CAE18885.1| Sun protein (Fmu protein) [Prochlorococcus marinus subsp. pastoris str. CCMP1986] Length = 437 Score = 49.7 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 22/101 (21%), Positives = 43/101 (42%), Gaps = 2/101 (1%) Query: 60 VYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECH 119 + +D+ + + G + ++ +DL I T K S ++ L +L G+ +L++ Sbjct: 36 EFNSLDIAFITELSFGCIRYRKFLDLWIDH--TSKLSHTKQPPKLRWLLHIGLYQLLKMD 93 Query: 120 SVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIK 160 +P IS V +A +NA+L R E + Sbjct: 94 KIPFSAAISSTVEVAKKTDLKGLAGTVNAILRNTVRHIEKE 134 >gi|314987947|gb|EFT32038.1| putative ribosomal RNA small subunit methyltransferase B [Propionibacterium acnes HL005PA2] Length = 458 Score = 49.7 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 25/156 (16%), Positives = 55/156 (35%), Gaps = 22/156 (14%) Query: 1 MTIQDNKKDLKLSHRRGI--ARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVE 58 MT + ++K RR AR A AL ++ G ++++ Sbjct: 1 MTQRVHQK------RRKADPARRLAYSALLAVETHGAYANLALADHLR-----------A 43 Query: 59 SVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIEC 118 + D + ++ G D +I + + ++L + +LR +++ Sbjct: 44 AKLTGRDAAFATELVDGTSRGTGTWDRIIEAASCR--APAKLQPGVRVVLRMAAHQILAM 101 Query: 119 HSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVS 154 VP ++ V +A +NA+ ++S Sbjct: 102 R-VPTRAAVASSVDLAGQVIGERVTGLVNAISRRIS 136 >gi|91791391|ref|YP_561042.1| sun protein [Shewanella denitrificans OS217] gi|91713393|gb|ABE53319.1| sun protein [Shewanella denitrificans OS217] Length = 428 Score = 49.7 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 23/93 (24%), Positives = 37/93 (39%), Gaps = 3/93 (3%) Query: 65 DLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVE 124 D + +GVM + +D +S CL + F IL +L G +L +P Sbjct: 38 DKALLAELCYGVMRQLPQLDKCVSDCLAK--PFKGKQRILHQLLLVGCYQL-YFTRIPSH 94 Query: 125 VIISEYVCIAHDFFYGDEPKFINAVLDKVSRKE 157 +SE + K +N VL + R+E Sbjct: 95 AAVSETAEACRQLKFDGLVKVVNGVLRNIQRQE 127 >gi|297620390|ref|YP_003708527.1| putative ribosomal RNA small subunit methyltransferase B [Waddlia chondrophila WSU 86-1044] gi|297375691|gb|ADI37521.1| putative ribosomal RNA small subunit methyltransferase B [Waddlia chondrophila WSU 86-1044] Length = 421 Score = 49.3 bits (117), Expect = 2e-04, Method: Composition-based stats. Identities = 21/89 (23%), Positives = 38/89 (42%), Gaps = 2/89 (2%) Query: 65 DLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVE 124 D R + +G +D ++ L +K + L + + R G+ + +P+ Sbjct: 44 DYHLAREVAYGTTRMALALD-HLALQLADKKKLA-LKLREKILFRMGLYQFHYMDKIPLY 101 Query: 125 VIISEYVCIAHDFFYGDEPKFINAVLDKV 153 I+ E + IA + KF+NA L KV Sbjct: 102 AIVDETIKIAKIHCHESFVKFLNACLRKV 130 >gi|282853850|ref|ZP_06263187.1| putative ribosomal RNA small subunit methyltransferase B [Propionibacterium acnes J139] gi|282583303|gb|EFB88683.1| putative ribosomal RNA small subunit methyltransferase B [Propionibacterium acnes J139] gi|314923543|gb|EFS87374.1| putative ribosomal RNA small subunit methyltransferase B [Propionibacterium acnes HL001PA1] gi|314966589|gb|EFT10688.1| putative ribosomal RNA small subunit methyltransferase B [Propionibacterium acnes HL082PA2] gi|314981514|gb|EFT25608.1| putative ribosomal RNA small subunit methyltransferase B [Propionibacterium acnes HL110PA3] gi|315092178|gb|EFT64154.1| putative ribosomal RNA small subunit methyltransferase B [Propionibacterium acnes HL110PA4] gi|315092889|gb|EFT64865.1| putative ribosomal RNA small subunit methyltransferase B [Propionibacterium acnes HL060PA1] gi|315103589|gb|EFT75565.1| putative ribosomal RNA small subunit methyltransferase B [Propionibacterium acnes HL050PA2] gi|327327412|gb|EGE69188.1| sun protein [Propionibacterium acnes HL103PA1] Length = 458 Score = 49.3 bits (117), Expect = 2e-04, Method: Composition-based stats. Identities = 22/147 (14%), Positives = 51/147 (34%), Gaps = 17/147 (11%) Query: 11 KLSHRRGIA---RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLE 67 +L +R A R A AL ++ G ++++ + D Sbjct: 4 RLHQKRRKADPARRLAYSALLAVETQGAYANLALADHLR-----------AAKLTGRDAA 52 Query: 68 WFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVII 127 + ++ G D +I + + ++L + +LR +++ VP + Sbjct: 53 FATELVDGTSRGTGTWDRIIEAASCR--APAKLQPGVRVVLRMAAHQILAMR-VPTRAAV 109 Query: 128 SEYVCIAHDFFYGDEPKFINAVLDKVS 154 + V +A +NA+ ++S Sbjct: 110 ASSVDLAGQVIGERVTGLVNAISRRIS 136 >gi|120601083|ref|YP_965483.1| NusB/RsmB/TIM44 [Desulfovibrio vulgaris DP4] gi|120561312|gb|ABM27056.1| NusB/RsmB/TIM44 [Desulfovibrio vulgaris DP4] Length = 507 Score = 49.3 bits (117), Expect = 2e-04, Method: Composition-based stats. Identities = 26/143 (18%), Positives = 50/143 (34%), Gaps = 14/143 (9%) Query: 19 ARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMD 78 AR A+ AL + G + + ++ + D +++G + Sbjct: 36 ARAGALVALDAVVRAGVDVQAALDDSLSH-----------ASLSRQDAALCTELVYGYLR 84 Query: 79 RKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFF 138 + + L+ L S+L + ++L EL +C VP + V + Sbjct: 85 SEIRLSWLVRRFLKA---PSKLPPGVLALLCLAAYELTQCDRVPAYATLDWAVSAVRALY 141 Query: 139 YGDEPKFINAVLDKVSRKEEIKR 161 + NAVL V R ++ R Sbjct: 142 GTGVSRLANAVLRNVDRLGDVWR 164 >gi|227530540|ref|ZP_03960589.1| rRNA SAM-dependent methyltransferase RmsB [Lactobacillus vaginalis ATCC 49540] gi|227349546|gb|EEJ39837.1| rRNA SAM-dependent methyltransferase RmsB [Lactobacillus vaginalis ATCC 49540] Length = 449 Score = 49.3 bits (117), Expect = 2e-04, Method: Composition-based stats. Identities = 27/138 (19%), Positives = 46/138 (33%), Gaps = 15/138 (10%) Query: 19 ARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMD 78 AR A +L E + + + Y E D I++G + Sbjct: 9 ARELAFASL-----------ERVRKTKAYSNLQVDETLRRHELKPADQRLVTTIVYGTLQ 57 Query: 79 RKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFF 138 + ++ + S LT +LD + ++L + VP + E + IA Sbjct: 58 HQLTLEYWLKS-LTPG---KQLDPWVETLLLTAFYQYNYLDRVPNWAVTDETIKIAKRRG 113 Query: 139 YGDEPKFINAVLDKVSRK 156 KF+ VL RK Sbjct: 114 NPGIRKFVTGVLHSALRK 131 >gi|256847372|ref|ZP_05552818.1| ribosomal RNA small subunit methyltransferase B [Lactobacillus coleohominis 101-4-CHN] gi|256716036|gb|EEU31011.1| ribosomal RNA small subunit methyltransferase B [Lactobacillus coleohominis 101-4-CHN] Length = 447 Score = 49.3 bits (117), Expect = 2e-04, Method: Composition-based stats. Identities = 19/124 (15%), Positives = 40/124 (32%), Gaps = 11/124 (8%) Query: 36 STTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEK- 94 T + + + +Y E VD +++GV+ K ++ ++ + Sbjct: 15 ETLDKVFQRGSYSNLQLNETLKRHQLKEVDKRLVTTLVYGVLQHKLTLEYWLTPLVKRDP 74 Query: 95 --WSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDK 152 W + ++L + +P E + IA KF+ VL Sbjct: 75 DSW--------VKTLLMLSFYQYQFMDRIPEWAATDEAIKIAKWRGNPGIRKFVTGVLHS 126 Query: 153 VSRK 156 R+ Sbjct: 127 FLRQ 130 >gi|23308856|ref|NP_600813.2| tRNA and rRNA cytosine-C5-methylase [Corynebacterium glutamicum ATCC 13032] gi|21324368|dbj|BAB98992.1| tRNA and rRNA cytosine-C5-methylases [Corynebacterium glutamicum ATCC 13032] Length = 444 Score = 49.3 bits (117), Expect = 2e-04, Method: Composition-based stats. Identities = 26/141 (18%), Positives = 47/141 (33%), Gaps = 20/141 (14%) Query: 20 RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79 R A + L + + E Y L + D + I +G + Sbjct: 10 REIAFEVL-----------DRVRTGEAYANLVLPRLLSKHNLSGRDAAFATEITYGTLRN 58 Query: 80 KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA---HD 136 +D +I + S +D + +LR G +++ V + V + Sbjct: 59 VGLLDEVIKAA--SGRELSDIDPEVLDVLRLGAYQVMFTR-VEDHAAVDTSVKMVGGLKK 115 Query: 137 FFYGDEPKFINAVLDKVSRKE 157 F F NA+L ++RKE Sbjct: 116 F---QATGFANAILRNITRKE 133 >gi|149917223|ref|ZP_01905722.1| ribosomal RNA small subunit methyltransferase B [Plesiocystis pacifica SIR-1] gi|149821830|gb|EDM81224.1| ribosomal RNA small subunit methyltransferase B [Plesiocystis pacifica SIR-1] Length = 453 Score = 49.3 bits (117), Expect = 2e-04, Method: Composition-based stats. Identities = 20/113 (17%), Positives = 42/113 (37%), Gaps = 18/113 (15%) Query: 12 LSHRRGIA-----RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDL 66 ++ R + R AV+ L +I+ + I+SE +L+ D Sbjct: 1 MARPRAKSPLPNPRRLAVRTLREIEQRQGFSNRILSE----------QLERFPDLDPRDR 50 Query: 67 EWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECH 119 +++GV+ + +D + + + L +ILR E++E Sbjct: 51 GLITTLVYGVLRHRGRLDAHLDAAADKPHKLK---GELRTILRVAAYEVLELD 100 >gi|145295720|ref|YP_001138541.1| hypothetical protein cgR_1647 [Corynebacterium glutamicum R] gi|140845640|dbj|BAF54639.1| hypothetical protein [Corynebacterium glutamicum R] Length = 503 Score = 49.3 bits (117), Expect = 2e-04, Method: Composition-based stats. Identities = 26/141 (18%), Positives = 47/141 (33%), Gaps = 20/141 (14%) Query: 20 RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79 R A + L + + E Y L + D + I +G + Sbjct: 69 REIAFEVL-----------DRVRTGEAYANLVLPRLLSKHNLSGRDAAFATEITYGTLRN 117 Query: 80 KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA---HD 136 +D +I + S +D + +LR G +++ V + V + Sbjct: 118 VGLLDEVIKAA--SGRELSDIDPEVLDVLRLGAYQVMFTR-VEDHAAVDTSVKMVGGLKK 174 Query: 137 FFYGDEPKFINAVLDKVSRKE 157 F F NA+L ++RKE Sbjct: 175 F---QATGFANAILRNITRKE 192 >gi|260857409|ref|YP_003231300.1| 16S rRNA m5C967 methyltransferase, S-adenosyl-L-methionine-dependent [Escherichia coli O26:H11 str. 11368] gi|260870031|ref|YP_003236433.1| 16S rRNA m5C967 methyltransferase, S-adenosyl-L-methionine-dependent [Escherichia coli O111:H- str. 11128] gi|257756058|dbj|BAI27560.1| 16S rRNA m5C967 methyltransferase, S-adenosyl-L-methionine-dependent [Escherichia coli O26:H11 str. 11368] gi|257766387|dbj|BAI37882.1| 16S rRNA m5C967 methyltransferase, S-adenosyl-L-methionine-dependent [Escherichia coli O111:H- str. 11128] gi|323154126|gb|EFZ40329.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli EPECa14] gi|323179175|gb|EFZ64749.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli 1180] Length = 429 Score = 49.3 bits (117), Expect = 2e-04, Method: Composition-based stats. Identities = 29/147 (19%), Positives = 56/147 (38%), Gaps = 17/147 (11%) Query: 12 LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71 + +R + R A QA+ QI G S + I+ ++ D + Sbjct: 1 MKKQRNL-RSMAAQAVEQIVEQGQSLSNIL-------------PPLQQKVSDKDKALLQE 46 Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131 + GV+ +D LI+ + + + + ++ GV +L+ +P ++E V Sbjct: 47 LCFGVLRTLSQLDWLINKLMARPMTGKQ--RTVHYLIMVGVYQLLYTR-IPPHAALAETV 103 Query: 132 CIAHDFFYGDEPKFINAVLDKVSRKEE 158 A IN VL + R++E Sbjct: 104 EGAVAIKRPQLKGLINGVLRQFQRQQE 130 >gi|209965632|ref|YP_002298547.1| ribosomal RNA small subunit methyltransferase B [Rhodospirillum centenum SW] gi|209959098|gb|ACI99734.1| ribosomal RNA small subunit methyltransferase B [Rhodospirillum centenum SW] Length = 447 Score = 49.3 bits (117), Expect = 2e-04, Method: Composition-based stats. Identities = 21/93 (22%), Positives = 36/93 (38%), Gaps = 5/93 (5%) Query: 65 DLEWFRVIIHGVMDRKQHIDLLISSCLTE-KWSFSRLDMILCSILRAGVLELIECHSVPV 123 D + R++ V R +D L+ L + + ILR G +L+ P Sbjct: 61 DRGFVRLLCATVFRRLGQLDALVQGALAKPGQPVK--GPV-QDILRLGAAQLLF-LGTPA 116 Query: 124 EVIISEYVCIAHDFFYGDEPKFINAVLDKVSRK 156 + V +A +NAVL ++SR+ Sbjct: 117 HAAVDTSVELAVARGQTPYKGLVNAVLRRLSRE 149 >gi|62390481|ref|YP_225883.1| 16S rRNA M(5)C 967 methyltransferase [Corynebacterium glutamicum ATCC 13032] gi|41325818|emb|CAF21607.1| PUTATIVE 16S RRNA M(5)C 967 METHYLTRANSFERASE [Corynebacterium glutamicum ATCC 13032] Length = 511 Score = 48.9 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 26/141 (18%), Positives = 47/141 (33%), Gaps = 20/141 (14%) Query: 20 RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79 R A + L + + E Y L + D + I +G + Sbjct: 77 REIAFEVL-----------DRVRTGEAYANLVLPRLLSKHNLSGRDAAFATEITYGTLRN 125 Query: 80 KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA---HD 136 +D +I + S +D + +LR G +++ V + V + Sbjct: 126 VGLLDEVIKAA--SGRELSDIDPEVLDVLRLGAYQVMFTR-VEDHAAVDTSVKMVGGLKK 182 Query: 137 FFYGDEPKFINAVLDKVSRKE 157 F F NA+L ++RKE Sbjct: 183 F---QATGFANAILRNITRKE 200 >gi|325478752|gb|EGC81863.1| putative ribosomal RNA small subunit methyltransferase B [Anaerococcus prevotii ACS-065-V-Col13] Length = 426 Score = 48.9 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 24/123 (19%), Positives = 48/123 (39%), Gaps = 7/123 (5%) Query: 39 EIISEYETYRFCADTELDVESVYL---HVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKW 95 E+I + D + + E YL +L + +I+GV++ K ++D +I K Sbjct: 5 ELIFNSLSNIIYKDKKSNDEINYLSDKASNLSYITKVIYGVLENKIYLDYMIDKL--SKV 62 Query: 96 SFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSR 155 ++ + IL G+ + + + V + F+NA+L R Sbjct: 63 KLRKIHKNVLLILEIGIYNI-HFLETKDYATVDKLVDLTKK-KNKRSAGFVNAILRNFIR 120 Query: 156 KEE 158 E+ Sbjct: 121 NEK 123 >gi|46581764|ref|YP_012572.1| sun protein [Desulfovibrio vulgaris str. Hildenborough] gi|46451187|gb|AAS97832.1| sun protein [Desulfovibrio vulgaris str. Hildenborough] gi|311232323|gb|ADP85177.1| Fmu (Sun) domain protein [Desulfovibrio vulgaris RCH1] Length = 507 Score = 48.9 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 26/143 (18%), Positives = 49/143 (34%), Gaps = 14/143 (9%) Query: 19 ARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMD 78 AR A+ AL + G + + ++ + D +++G + Sbjct: 36 ARAGALVALDAVVRAGVDVQAALDDSLSH-----------ASLSRQDAALCTELVYGYLR 84 Query: 79 RKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFF 138 + + L+ L S+L + ++L EL +C VP + V + Sbjct: 85 SEIRLSWLVRRFLKA---PSKLPPGVLALLCLAAYELTQCDRVPAYATLDWAVSAVRALY 141 Query: 139 YGDEPKFINAVLDKVSRKEEIKR 161 + NAVL V R + R Sbjct: 142 GTGVSRLANAVLRNVDRLGDAWR 164 >gi|152994058|ref|YP_001338893.1| sun protein [Marinomonas sp. MWYL1] gi|150834982|gb|ABR68958.1| sun protein [Marinomonas sp. MWYL1] Length = 462 Score = 48.9 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 30/157 (19%), Positives = 58/157 (36%), Gaps = 16/157 (10%) Query: 2 TIQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVY 61 + N S + AR A++ + T ++ + A +LDV S + Sbjct: 6 SFPSNTSQSSKSTGQQSARQVAIKVI---------TNILLQQGSLSTQLARHQLDVASEH 56 Query: 62 LHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSV 121 + + + GV + ++ I+ L F D L ++L G+ +L + Sbjct: 57 APM----LKELCFGVCRQYPRLNS-IALHLLAH-PFEEKDTDLYAVLLLGLYQLTYM-NT 109 Query: 122 PVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEE 158 P ++E V K +NAVL + R+ + Sbjct: 110 PDHAAVNETVEACRILNKDWATKLMNAVLRRYQREAD 146 >gi|288904707|ref|YP_003429928.1| RNA-binding Sun protein [Streptococcus gallolyticus UCN34] gi|288731432|emb|CBI12984.1| putative RNA-binding Sun protein [Streptococcus gallolyticus UCN34] Length = 440 Score = 48.9 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 28/143 (19%), Positives = 60/143 (41%), Gaps = 15/143 (10%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 + AR A+ L E + E Y A + + D I++G Sbjct: 6 KNQARGLALLVL-----------ENVFEDGAYSNIALNQELSHTTLTPKDKSLVTEIVYG 54 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135 + RK ++ ++ + ++ +LD + +L + +L+ +P ++++ V IA Sbjct: 55 TVARKITLEWYLAHYIKDR---DKLDSWVYYLLMLSLYQLLYLDKIPAHAVVNDAVNIAK 111 Query: 136 DFFYGDEP-KFINAVLDKVSRKE 157 + KF+NAVL + +++E Sbjct: 112 NRGNKKGAEKFVNAVLRRFTKEE 134 >gi|306830710|ref|ZP_07463875.1| ribosomal RNA small subunit methyltransferase B [Streptococcus gallolyticus subsp. gallolyticus TX20005] gi|304427218|gb|EFM30325.1| ribosomal RNA small subunit methyltransferase B [Streptococcus gallolyticus subsp. gallolyticus TX20005] Length = 440 Score = 48.9 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 28/143 (19%), Positives = 60/143 (41%), Gaps = 15/143 (10%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 + AR A+ L E + E Y A + + D I++G Sbjct: 6 KNQARGLALLVL-----------ENVFEDGAYSNIALNQELSHTTLSPKDKSLVTEIVYG 54 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135 + RK ++ ++ + ++ +LD + +L + +L+ +P ++++ V IA Sbjct: 55 TVARKITLEWYLAHYIKDR---DKLDSWVYYLLMLSLYQLLYLDKIPAHAVVNDAVNIAK 111 Query: 136 DFFYGDEP-KFINAVLDKVSRKE 157 + KF+NAVL + +++E Sbjct: 112 NRGNKKGAEKFVNAVLRRFTKEE 134 >gi|87121018|ref|ZP_01076910.1| Fmu, rRNA SAM-dependent methyltransferase [Marinomonas sp. MED121] gi|86163856|gb|EAQ65129.1| Fmu, rRNA SAM-dependent methyltransferase [Marinomonas sp. MED121] Length = 412 Score = 48.9 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 15/90 (16%), Positives = 32/90 (35%), Gaps = 3/90 (3%) Query: 69 FRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIIS 128 + I GV ++ L + F D + + + + ++ P ++ Sbjct: 20 LKEICFGVSRHYPKLNSFALHMLDK--PFQEKDYDVYAAILVALYQIDYM-DTPEHAAVN 76 Query: 129 EYVCIAHDFFYGDEPKFINAVLDKVSRKEE 158 E V A K +NA+L + R+ + Sbjct: 77 EAVESAKLIGKPWAGKLVNAILRRYLREAD 106 >gi|148241673|ref|YP_001226830.1| ribosomal RNA small subunit methyltransferase B [Synechococcus sp. RCC307] gi|147849983|emb|CAK27477.1| Ribosomal RNA small subunit methyltransferase B [Synechococcus sp. RCC307] Length = 454 Score = 48.9 bits (116), Expect = 3e-04, Method: Composition-based stats. Identities = 22/112 (19%), Positives = 41/112 (36%), Gaps = 2/112 (1%) Query: 59 SVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIEC 118 S D + +G + +++ +D + L K ++ L +L G+ +++ Sbjct: 59 SKLSPRDRGLATELAYGAIRQRRRLDGWLD--LLGKVPAAKQPPRLRWLLHVGLQQILLM 116 Query: 119 HSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRSGCVSAITQ 170 VP +S V +A +N VL R E S V + Q Sbjct: 117 DRVPASAAVSTAVELAKRERLQRLAPVVNGVLRAAVRAVEAGESLPVPSDPQ 168 >gi|313791967|gb|EFS40068.1| putative ribosomal RNA small subunit methyltransferase B [Propionibacterium acnes HL110PA1] gi|327453314|gb|EGE99968.1| putative ribosomal RNA small subunit methyltransferase B [Propionibacterium acnes HL092PA1] Length = 458 Score = 48.6 bits (115), Expect = 3e-04, Method: Composition-based stats. Identities = 23/154 (14%), Positives = 51/154 (33%), Gaps = 18/154 (11%) Query: 1 MTIQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESV 60 MT + ++K K R A Y + + + Y A + + Sbjct: 1 MTQRVHQKRRKADPARRPA--------YSALLA-------VETHGAYANLALADHLRAAK 45 Query: 61 YLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHS 120 D + ++ G D +I + + ++L + +LR +++ Sbjct: 46 LTGRDAAFATELVDGTSRGTGTWDRIIEAASCR--APAKLQPGVRVVLRMAAHQILAMR- 102 Query: 121 VPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVS 154 VP ++ V +A +NA+ ++S Sbjct: 103 VPTRAAVASSVDLAGQVIGERVTGLVNAISRRIS 136 >gi|262373879|ref|ZP_06067157.1| ribosomal RNA small subunit methyltransferase B [Acinetobacter junii SH205] gi|262311632|gb|EEY92718.1| ribosomal RNA small subunit methyltransferase B [Acinetobacter junii SH205] Length = 435 Score = 48.6 bits (115), Expect = 3e-04, Method: Composition-based stats. Identities = 29/138 (21%), Positives = 55/138 (39%), Gaps = 25/138 (18%) Query: 21 LAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRK 80 L AVQ G S T +++++ ++ D + + G + + Sbjct: 22 LLAVQ-------NGQSLTSVLNQHI-------------NMVSERDRGLYHELTLGCLRQW 61 Query: 81 QHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYG 140 + + LT+ L+ S L G+ +++ C +PV ISE V A + Sbjct: 62 FSLKAITLPLLTKPLDNEALE----SCLYLGLYQIL-CTRIPVHAAISETVNAAKQLGFE 116 Query: 141 DEPKFINAVLDKVSRKEE 158 +NA+L +VSR+ + Sbjct: 117 PMSGLVNAILRRVSRETD 134 >gi|294789034|ref|ZP_06754274.1| ribosomal RNA small subunit methyltransferase B [Simonsiella muelleri ATCC 29453] gi|294483136|gb|EFG30823.1| ribosomal RNA small subunit methyltransferase B [Simonsiella muelleri ATCC 29453] Length = 421 Score = 48.6 bits (115), Expect = 3e-04, Method: Composition-based stats. Identities = 24/138 (17%), Positives = 51/138 (36%), Gaps = 18/138 (13%) Query: 22 AAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQ 81 A Q L+ ++ + E+ + + EL + + D+ + G + Sbjct: 9 LATQTLFAVENGKNLSDEL-----AHIIVQNPELSPQDKGMLQDIAYGCQRFSGSLKY-- 61 Query: 82 HIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV-CIAHDFFYG 140 ++ L + + +L L + +L + P V+ +E V IA G Sbjct: 62 ----MLGKLLNK--PID--NKVLEHYLLVALYQLNYTRNAPHAVV-NEAVSNIAKI-GRG 111 Query: 141 DEPKFINAVLDKVSRKEE 158 F NA+L + R+++ Sbjct: 112 QYRSFANAILRRFLREQD 129 >gi|223994911|ref|XP_002287139.1| predicted protein [Thalassiosira pseudonana CCMP1335] gi|220976255|gb|EED94582.1| predicted protein [Thalassiosira pseudonana CCMP1335] Length = 1014 Score = 48.6 bits (115), Expect = 3e-04, Method: Composition-based stats. Identities = 37/165 (22%), Positives = 59/165 (35%), Gaps = 21/165 (12%) Query: 4 QDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLH 63 Q +K K + + AR A+ AL + + T + D + Sbjct: 498 QPKQKSTKKKNVQPTARSIAINALATSAASNSGAHVNAAAFATQQLEQDEHYNE---MEA 554 Query: 64 VDLEWFRVIIHGVMDRKQHIDLL----ISSCLTEKWSFSRLDMILCSILRAGVLELIECH 119 D + R+++ V R ID + I +K S L + + LR GV +L+ Sbjct: 555 RDRAFARLLVATVERRLGQIDGVLGSCIEKYPPKKGKHSHL---IQATLRTGVAQLLF-L 610 Query: 120 SVPVEVIISEYVC-------IAHDFFYG-DEP--KFINAVLDKVS 154 P E V ++ Y EP KF+N V K+S Sbjct: 611 DTPPFAANKETVQVLRMHHHLSKTSTYPVPEPMVKFVNGVFRKLS 655 >gi|159902963|ref|YP_001550307.1| Sun protein (Fmu protein) [Prochlorococcus marinus str. MIT 9211] gi|159888139|gb|ABX08353.1| Sun protein (Fmu protein) [Prochlorococcus marinus str. MIT 9211] Length = 432 Score = 48.6 bits (115), Expect = 3e-04, Method: Composition-based stats. Identities = 17/102 (16%), Positives = 41/102 (40%), Gaps = 2/102 (1%) Query: 61 YLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHS 120 +D I +G + +++++D I L + + + L +L G+ ++ Sbjct: 32 MKAIDKALTTEIAYGSIRQRKYLDSWID-NLAKISALKQ-PPRLRWLLHIGLYQIFLMER 89 Query: 121 VPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRS 162 +PV +++ V +A + +N +L R E + Sbjct: 90 IPVSAVVNTTVQLAKNNNLNKLSSVVNGILRNAIRIREAGQG 131 >gi|89056531|ref|YP_511982.1| Fmu (Sun) [Jannaschia sp. CCS1] gi|88866080|gb|ABD56957.1| Fmu (Sun) [Jannaschia sp. CCS1] Length = 410 Score = 48.2 bits (114), Expect = 4e-04, Method: Composition-based stats. Identities = 20/99 (20%), Positives = 37/99 (37%), Gaps = 7/99 (7%) Query: 57 VESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELI 116 V+ + + V+ +D +I T K + ++LR G +EL+ Sbjct: 24 VDVPATGAEAARANRLALSVLRNLDAVDAVIKPYTTRKPQIG-----VHNLLRLGAVELL 78 Query: 117 ECHSVPVEVIISEYVCIAHDF-FYGDEPKFINAVLDKVS 154 V+ S+ V IA +NA+L K++ Sbjct: 79 VNGEDAHGVV-SDIVGIAKTQPHTRKASGMVNAILRKIA 116 >gi|114328418|ref|YP_745575.1| 16S rRNA m(5)C 967 methyltransferase [Granulibacter bethesdensis CGDNIH1] gi|114316592|gb|ABI62652.1| 16S rRNA m(5)C 967 methyltransferase [Granulibacter bethesdensis CGDNIH1] Length = 452 Score = 48.2 bits (114), Expect = 4e-04, Method: Composition-based stats. Identities = 21/94 (22%), Positives = 32/94 (34%), Gaps = 6/94 (6%) Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135 + R ID ++ L + + ILR G L+ P + V +A Sbjct: 78 TLRRLGTIDAVLEPFLRREPP----APV-RDILRLGAAGLLF-LDTPPHAAVGTAVDLAR 131 Query: 136 DFFYGDEPKFINAVLDKVSRKEEIKRSGCVSAIT 169 INAVL KV+ + +G S Sbjct: 132 QLRLAPFTGLINAVLRKVATGGQEMLNGLDSPRL 165 >gi|320195380|gb|EFW70007.1| Ribosomal RNA small subunit methyltransferase B [Escherichia coli WV_060327] Length = 429 Score = 48.2 bits (114), Expect = 4e-04, Method: Composition-based stats. Identities = 27/147 (18%), Positives = 56/147 (38%), Gaps = 17/147 (11%) Query: 12 LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71 + +R + R A QA+ Q+ G S + I+ ++ D + Sbjct: 1 MKKQRNL-RSMAAQAIEQVVEQGQSLSNIL-------------PPLQQKVSDKDKALLQE 46 Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131 + GV+ +D LI+ + + + + ++ G+ +L+ +P ++E V Sbjct: 47 LCFGVLRTLSQLDWLINKLMARPMTGKQ--RTVHYLIMVGLYQLLYTR-IPPHAALAETV 103 Query: 132 CIAHDFFYGDEPKFINAVLDKVSRKEE 158 A IN VL + R++E Sbjct: 104 EGAVAIKRPQLKGLINGVLRQFQRQQE 130 >gi|240103511|ref|YP_002959820.1| SAM-dependent tRNA/rRNA cytosine-C5 methylase [Thermococcus gammatolerans EJ3] gi|239911065|gb|ACS33956.1| SAM-dependent tRNA/rRNA cytosine-C5 methylase [Thermococcus gammatolerans EJ3] Length = 451 Score = 48.2 bits (114), Expect = 4e-04, Method: Composition-based stats. Identities = 19/88 (21%), Positives = 37/88 (42%), Gaps = 2/88 (2%) Query: 68 WFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVII 127 + + + ID +I+S L + LD L ++LR G E+ VP + Sbjct: 49 LAHAYVFEIEKWRAKIDFIINSVL-KGSKVEDLDPYLANLLRIGTFEIHFRK-VPPAIAT 106 Query: 128 SEYVCIAHDFFYGDEPKFINAVLDKVSR 155 + + + F KF+NA++ + + Sbjct: 107 DSIIRVVKERFDFSRAKFVNALMHSIEK 134 >gi|212225119|ref|YP_002308355.1| tRNA/rRNA cytosine-C5-methylase [Thermococcus onnurineus NA1] gi|212010076|gb|ACJ17458.1| tRNA/rRNA cytosine-C5-methylase [Thermococcus onnurineus NA1] Length = 450 Score = 48.2 bits (114), Expect = 4e-04, Method: Composition-based stats. Identities = 19/88 (21%), Positives = 38/88 (43%), Gaps = 2/88 (2%) Query: 68 WFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVII 127 + + + ID +I+S L + + LD L ++LR G E+ VP + Sbjct: 49 LAHAYVFEIEKWRAKIDFIINSVL-KGSTVEDLDPYLANLLRIGTFEIHFRK-VPPAIAT 106 Query: 128 SEYVCIAHDFFYGDEPKFINAVLDKVSR 155 + + F KF+NA++ ++ + Sbjct: 107 DSIIRVVKGHFDFSRAKFVNALMHEIEK 134 >gi|229140511|ref|ZP_04269066.1| rRNA SAM-dependent methyltransferase RmsB [Bacillus cereus BDRD-ST26] gi|228643072|gb|EEK99348.1| rRNA SAM-dependent methyltransferase RmsB [Bacillus cereus BDRD-ST26] Length = 360 Score = 48.2 bits (114), Expect = 4e-04, Method: Composition-based stats. Identities = 12/42 (28%), Positives = 17/42 (40%) Query: 115 LIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRK 156 +I VP I E V IA + +N VL + R+ Sbjct: 1 MIYLDRVPERAAIHEAVEIAKRRGHKGIAGMVNGVLRSIQRE 42 >gi|294648678|ref|ZP_06726140.1| Sun family protein [Acinetobacter haemolyticus ATCC 19194] gi|292825468|gb|EFF84209.1| Sun family protein [Acinetobacter haemolyticus ATCC 19194] Length = 435 Score = 48.2 bits (114), Expect = 4e-04, Method: Composition-based stats. Identities = 28/138 (20%), Positives = 54/138 (39%), Gaps = 25/138 (18%) Query: 21 LAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRK 80 L AVQ G S +++++ ++ D + + G + + Sbjct: 22 LLAVQ-------NGQSLASVLNQHI-------------NIVSERDRGLYHELTLGCLRQW 61 Query: 81 QHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYG 140 + + LT+ L+ S L G+ +++ C +PV ISE V A + Sbjct: 62 YSLKAITLPLLTKPLDNEALE----SCLYLGLYQIL-CTRIPVHAAISETVNAAKQLGFE 116 Query: 141 DEPKFINAVLDKVSRKEE 158 +NA+L +VSR+ + Sbjct: 117 PMSGLVNAILRRVSRETD 134 >gi|323342155|ref|ZP_08082388.1| rRNA SAM-dependent methyltransferase RmsB [Erysipelothrix rhusiopathiae ATCC 19414] gi|322464580|gb|EFY09773.1| rRNA SAM-dependent methyltransferase RmsB [Erysipelothrix rhusiopathiae ATCC 19414] Length = 404 Score = 48.2 bits (114), Expect = 4e-04, Method: Composition-based stats. Identities = 19/107 (17%), Positives = 39/107 (36%), Gaps = 5/107 (4%) Query: 58 ESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIE 117 E D + ++ + +D + +K L + +++ G + + Sbjct: 26 ELDLPAQDQAFVSAFVYATLQNSLFLDYQYEDLVDKK-----LPKEVRLVIKMGCAQYFK 80 Query: 118 CHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRSGC 164 +P ++SE V + +NAVL KV + E + SG Sbjct: 81 MDKIPDYALVSETVDLCKAIGKHRYSGVVNAVLKKVIERNEREISGS 127 >gi|87125560|ref|ZP_01081405.1| Fmu, rRNA SAM-dependent methyltransferase [Synechococcus sp. RS9917] gi|86166860|gb|EAQ68122.1| Fmu, rRNA SAM-dependent methyltransferase [Synechococcus sp. RS9917] Length = 454 Score = 48.2 bits (114), Expect = 4e-04, Method: Composition-based stats. Identities = 18/117 (15%), Positives = 37/117 (31%), Gaps = 18/117 (15%) Query: 59 SVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMI--------LCSILRA 110 + D + +G + R+ +D W RL + L +L Sbjct: 46 AGLSGADRGLATELAYGAIRRRLWLDA---------W-LDRLGRVPARKQPPRLRWLLHV 95 Query: 111 GVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRSGCVSA 167 G+ +L +P ++ V +A +N +L R + + + A Sbjct: 96 GLYQLFWMERIPAAAAVNTTVELAKHHRLARLAPVVNGLLRAALRARQAGDTLAMPA 152 >gi|313608940|gb|EFR84692.1| transcription antitermination factor NusB [Listeria monocytogenes FSL F2-208] Length = 57 Score = 48.2 bits (114), Expect = 4e-04, Method: Composition-based stats. Identities = 17/72 (23%), Positives = 31/72 (43%), Gaps = 16/72 (22%) Query: 15 RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74 +R AR A+QAL+QI++ S + I +++ ++ ++ Sbjct: 2 KRREAREKALQALFQIELNEMSLDQAI----------------KNIMEDEQDDYMEKLVE 45 Query: 75 GVMDRKQHIDLL 86 GVM K ID + Sbjct: 46 GVMANKADIDAI 57 >gi|94985598|ref|YP_604962.1| NusB/RsmB/TIM44 [Deinococcus geothermalis DSM 11300] gi|94555879|gb|ABF45793.1| rRNA methyltransferase, sun family protein [Deinococcus geothermalis DSM 11300] Length = 427 Score = 48.2 bits (114), Expect = 4e-04, Method: Composition-based stats. Identities = 33/144 (22%), Positives = 55/144 (38%), Gaps = 18/144 (12%) Query: 19 ARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMD 78 AR AV+ L T +++ ET+ A E+ D +++G + Sbjct: 11 ARALAVRVL----------TRVLAG-ETFAAPALDAALAEARLPARDAGLATHLVYGTLR 59 Query: 79 RKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFF 138 ++ ++ L EK ++L AG E P +SEYV +A Sbjct: 60 FAPMLEAALAPLLREKTHSK-----TRALLLAGAFE-KLVLGTPPHAALSEYVNVAR-MA 112 Query: 139 YGDEPKFINAVLDKVSRKEEIKRS 162 P +NAVL +V R E + + Sbjct: 113 RLAPPGLVNAVLRRVERPAETEET 136 >gi|229197976|ref|ZP_04324690.1| rRNA SAM-dependent methyltransferase RmsB [Bacillus cereus m1293] gi|228585455|gb|EEK43559.1| rRNA SAM-dependent methyltransferase RmsB [Bacillus cereus m1293] Length = 360 Score = 48.2 bits (114), Expect = 4e-04, Method: Composition-based stats. Identities = 12/42 (28%), Positives = 17/42 (40%) Query: 115 LIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRK 156 +I VP I E V IA + +N VL + R+ Sbjct: 1 MIYLDRVPERAAIHEAVEIAKRRGHKGIAGMVNGVLRSIQRE 42 >gi|261885487|ref|ZP_06009526.1| transcription antitermination protein NusB [Campylobacter fetus subsp. venerealis str. Azul-94] Length = 32 Score = 48.2 bits (114), Expect = 4e-04, Method: Composition-based stats. Identities = 10/29 (34%), Positives = 18/29 (62%) Query: 127 ISEYVCIAHDFFYGDEPKFINAVLDKVSR 155 I+E + +A++ +FIN VLD +S+ Sbjct: 2 INEAILLANELGSDSSTRFINGVLDAISK 30 >gi|15833408|ref|NP_312181.1| 16S rRNA methyltransferase B [Escherichia coli O157:H7 str. Sakai] gi|13363627|dbj|BAB37577.1| RNA methyltransferase [Escherichia coli O157:H7 str. Sakai] Length = 429 Score = 48.2 bits (114), Expect = 4e-04, Method: Composition-based stats. Identities = 27/147 (18%), Positives = 57/147 (38%), Gaps = 17/147 (11%) Query: 12 LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71 + ++R + R A QA+ Q+ G S + I+ ++ D + Sbjct: 1 MKNQRNL-RSMAAQAVEQVVEQGQSLSNIL-------------PPLQQKVSDKDKALLQE 46 Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131 + GV+ +D LI+ + + + + ++ G+ +L+ +P ++E V Sbjct: 47 LCFGVLRTLSQLDWLINKSMARPMTGKQ--RTVHYLIMVGLYQLLYTR-IPPHAALAETV 103 Query: 132 CIAHDFFYGDEPKFINAVLDKVSRKEE 158 A IN VL + R++E Sbjct: 104 EGAIAIKRPQLKGLINGVLRQFQRQQE 130 >gi|229092908|ref|ZP_04224042.1| rRNA SAM-dependent methyltransferase RmsB [Bacillus cereus Rock3-42] gi|228690530|gb|EEL44313.1| rRNA SAM-dependent methyltransferase RmsB [Bacillus cereus Rock3-42] Length = 360 Score = 47.8 bits (113), Expect = 5e-04, Method: Composition-based stats. Identities = 12/42 (28%), Positives = 17/42 (40%) Query: 115 LIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRK 156 +I VP I E V IA + +N VL + R+ Sbjct: 1 MIYLDRVPERAAIHEAVEIAKRRGHKGIAGMVNGVLRSIQRE 42 >gi|228916502|ref|ZP_04080068.1| rRNA SAM-dependent methyltransferase RmsB [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228928913|ref|ZP_04091945.1| rRNA SAM-dependent methyltransferase RmsB [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228935179|ref|ZP_04098006.1| rRNA SAM-dependent methyltransferase RmsB [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228947584|ref|ZP_04109874.1| rRNA SAM-dependent methyltransferase RmsB [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|229123379|ref|ZP_04252583.1| rRNA SAM-dependent methyltransferase RmsB [Bacillus cereus 95/8201] gi|229186105|ref|ZP_04313274.1| rRNA SAM-dependent methyltransferase RmsB [Bacillus cereus BGSC 6E1] gi|228597281|gb|EEK54932.1| rRNA SAM-dependent methyltransferase RmsB [Bacillus cereus BGSC 6E1] gi|228660155|gb|EEL15791.1| rRNA SAM-dependent methyltransferase RmsB [Bacillus cereus 95/8201] gi|228812104|gb|EEM58435.1| rRNA SAM-dependent methyltransferase RmsB [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228824544|gb|EEM70349.1| rRNA SAM-dependent methyltransferase RmsB [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228830720|gb|EEM76325.1| rRNA SAM-dependent methyltransferase RmsB [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228843081|gb|EEM88163.1| rRNA SAM-dependent methyltransferase RmsB [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] Length = 360 Score = 47.8 bits (113), Expect = 5e-04, Method: Composition-based stats. Identities = 12/42 (28%), Positives = 17/42 (40%) Query: 115 LIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRK 156 +I VP I E V IA + +N VL + R+ Sbjct: 1 MIYLDRVPERAAIHEAVEIAKRRGHKGIAGMVNGVLRSIQRE 42 >gi|228987008|ref|ZP_04147134.1| rRNA SAM-dependent methyltransferase RmsB [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|229157441|ref|ZP_04285519.1| rRNA SAM-dependent methyltransferase RmsB [Bacillus cereus ATCC 4342] gi|228626168|gb|EEK82917.1| rRNA SAM-dependent methyltransferase RmsB [Bacillus cereus ATCC 4342] gi|228772786|gb|EEM21226.1| rRNA SAM-dependent methyltransferase RmsB [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] Length = 360 Score = 47.8 bits (113), Expect = 5e-04, Method: Composition-based stats. Identities = 12/42 (28%), Positives = 17/42 (40%) Query: 115 LIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRK 156 +I VP I E V IA + +N VL + R+ Sbjct: 1 MIYLDRVPERAAIHEAVEIAKRRGHKGIAGMVNGVLRSIQRE 42 >gi|324009054|gb|EGB78273.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli MS 57-2] Length = 429 Score = 47.8 bits (113), Expect = 5e-04, Method: Composition-based stats. Identities = 27/147 (18%), Positives = 56/147 (38%), Gaps = 17/147 (11%) Query: 12 LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71 + +R + R A QA+ Q+ G S + I+ ++ D + Sbjct: 1 MKKQRNL-RSMAAQAIEQVVEQGQSLSNIL-------------PPLQQKVSDKDKALLQE 46 Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131 + GV+ +D LI+ + + + + ++ G+ +L+ +P ++E V Sbjct: 47 LCFGVLRTLSQLDWLINKLMARPMTGKQ--RTVHYLIMVGLYQLLYTR-IPPHAALAETV 103 Query: 132 CIAHDFFYGDEPKFINAVLDKVSRKEE 158 A IN VL + R++E Sbjct: 104 EGAIAIKRPQLKGLINGVLRQFQRQQE 130 >gi|328541770|ref|YP_004301879.1| ribosomal RNA small subunit methyltransferase B [polymorphum gilvum SL003B-26A1] gi|326411522|gb|ADZ68585.1| Ribosomal RNA small subunit methyltransferase B [Polymorphum gilvum SL003B-26A1] Length = 439 Score = 47.8 bits (113), Expect = 5e-04, Method: Composition-based stats. Identities = 25/132 (18%), Positives = 48/132 (36%), Gaps = 14/132 (10%) Query: 37 TTEIISEYETYRFCADTELDVESVYLH------VDLEWFRVIIHGVMDRKQHIDLLISSC 90 +I+ R D ELD S + D R I+ + R+ I ++ + Sbjct: 13 AADILGAVVHARRPLDGELDPVSGHSGFRALDSKDRALVRAILGACLRRRGRIAAIVDAL 72 Query: 91 LTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKF---IN 147 L + + IL +++ VP +S V +A + +N Sbjct: 73 LDRPIP-EKTGRV-LDILHVAAAQVLF-LDVPDRAAVSVAVDLAAA--DRRARPYKGLVN 127 Query: 148 AVLDKVSRKEEI 159 VL ++SR+++ Sbjct: 128 GVLRRLSREKDA 139 >gi|229162801|ref|ZP_04290758.1| Ribosomal RNA small subunit methyltransferase B [Bacillus cereus R309803] gi|228620683|gb|EEK77552.1| Ribosomal RNA small subunit methyltransferase B [Bacillus cereus R309803] Length = 360 Score = 47.8 bits (113), Expect = 5e-04, Method: Composition-based stats. Identities = 12/42 (28%), Positives = 17/42 (40%) Query: 115 LIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRK 156 +I VP I E V IA + +N VL + R+ Sbjct: 1 MIYLDRVPERAAIHEAVEIAKRRGHKGIAGMVNGVLRSIQRE 42 >gi|254805842|ref|YP_003084063.1| Sun protein [Neisseria meningitidis alpha14] gi|254669384|emb|CBA08529.1| Sun protein [Neisseria meningitidis alpha14] gi|325205205|gb|ADZ00658.1| ribosomal RNA small subunit methyltransferase B [Neisseria meningitidis M04-240196] Length = 419 Score = 47.8 bits (113), Expect = 5e-04, Method: Composition-based stats. Identities = 26/126 (20%), Positives = 50/126 (39%), Gaps = 17/126 (13%) Query: 34 GCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTE 93 G + +++++ T A +L + D+ + G + +++ L + Sbjct: 20 GRNLQDVLAQIRT----AHPDLTAQENGALQDIAY------GCQRYLGSLKHMLAQMLKK 69 Query: 94 KWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVC-IAHDFFYGDEPKFINAVLDK 152 + L S+L A + +L + P V+ +E V IA G F NAVL + Sbjct: 70 --PID--NPQLESLLLAALYQLHYTRNAPHAVV-NEAVESIAKI-GRGQYRSFANAVLRR 123 Query: 153 VSRKEE 158 R+ E Sbjct: 124 FLRERE 129 >gi|222087916|ref|YP_002546454.1| tRNA and rRNA cytosine-C5-methylase (RNA methyltransferase) protein [Agrobacterium radiobacter K84] gi|221725364|gb|ACM28520.1| tRNA and rRNA cytosine-C5-methylase (RNA methyltransferase) protein [Agrobacterium radiobacter K84] Length = 469 Score = 47.8 bits (113), Expect = 5e-04, Method: Composition-based stats. Identities = 20/113 (17%), Positives = 40/113 (35%), Gaps = 8/113 (7%) Query: 49 FCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSIL 108 A+ D R I++ + I+ I+S L L +L Sbjct: 60 LDAEGGNPAYKALGDSDRALVRAILNSALRHLPRIEAAIASLLDS--PLPEGARALHHVL 117 Query: 109 RAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKF---INAVLDKVSRKEE 158 G +++ VP + V A+ +F +NA+L ++ R+++ Sbjct: 118 VVGAAQMLY-LDVPDHSAVDIAVEQANQ--DPRNRRFAKLVNAILRRIGREKQ 167 >gi|323974759|gb|EGB69872.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli TW10509] Length = 456 Score = 47.8 bits (113), Expect = 6e-04, Method: Composition-based stats. Identities = 27/147 (18%), Positives = 56/147 (38%), Gaps = 17/147 (11%) Query: 12 LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71 + +R + R A QA+ Q+ G S + I+ ++ D + Sbjct: 28 MKKQRNL-RSMAAQAVEQVVEQGQSLSNIL-------------PPLQQKVSDKDKALLQE 73 Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131 + GV+ +D LI+ + + + + ++ G+ +L+ +P ++E V Sbjct: 74 LCFGVLRTLSQLDWLINKLMARPMTGKQ--RTVHYLIMVGLYQLLYTR-IPPHAALAETV 130 Query: 132 CIAHDFFYGDEPKFINAVLDKVSRKEE 158 A IN VL + R++E Sbjct: 131 EGAVAIKRPQLKGLINGVLRQFQRQQE 157 >gi|226953279|ref|ZP_03823743.1| 16S rRNA m5C967 SAM-dependent methyltransferase [Acinetobacter sp. ATCC 27244] gi|226835967|gb|EEH68350.1| 16S rRNA m5C967 SAM-dependent methyltransferase [Acinetobacter sp. ATCC 27244] Length = 435 Score = 47.8 bits (113), Expect = 6e-04, Method: Composition-based stats. Identities = 28/138 (20%), Positives = 55/138 (39%), Gaps = 25/138 (18%) Query: 21 LAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRK 80 L AVQ G S + +++++ ++ D + + G + + Sbjct: 22 LLAVQ-------NGQSLSSVLNQHI-------------NMVSERDRGLYHELTLGCLRQW 61 Query: 81 QHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYG 140 + + LT+ L+ S L G+ +++ C +PV ISE V A + Sbjct: 62 YSLKAITLPLLTKPLDNEALE----SCLYLGLYQIL-CTRIPVHAAISETVNAAKQLGFE 116 Query: 141 DEPKFINAVLDKVSRKEE 158 +NA+L +VSR+ + Sbjct: 117 PMSGLVNAILRRVSRETD 134 >gi|50365012|ref|YP_053437.1| tRNA and rRNA cytosine-C5-methylase [Mesoplasma florum L1] gi|50363568|gb|AAT75553.1| tRNA and rRNA cytosine-C5-methylases [Mesoplasma florum L1] Length = 425 Score = 47.8 bits (113), Expect = 6e-04, Method: Composition-based stats. Identities = 23/92 (25%), Positives = 39/92 (42%), Gaps = 13/92 (14%) Query: 71 VIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSIL-RAGVLELIECHSVPVEVIISE 129 I+HG + + +D + + K + I IL + +L ++P +++E Sbjct: 49 AIVHGTITNQILLDHVSRKLIDVKKT-----NIDIQILLWMSIYQLRFLKTIPQYAVVNE 103 Query: 130 YVCIAHDFFYGDEPKF---INAVLDKVSRKEE 158 V IA KF +NA L KV + EE Sbjct: 104 SVMIAKSVN----HKFSGLLNACLKKVIKNEE 131 >gi|146319475|ref|YP_001199187.1| transcription termination factor [Streptococcus suis 05ZYH33] gi|145690281|gb|ABP90787.1| Transcription termination factor [Streptococcus suis 05ZYH33] Length = 78 Score = 47.8 bits (113), Expect = 6e-04, Method: Composition-based stats. Identities = 16/85 (18%), Positives = 36/85 (42%), Gaps = 8/85 (9%) Query: 12 LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71 + + R R A+QA+ ++ + + + D E + E V + + + Sbjct: 2 MKNNRHALRKCALQAIVSLEFGQEPV-----QAAQFSYLYDREEEQEGVEIPL---FLLN 53 Query: 72 IIHGVMDRKQHIDLLISSCLTEKWS 96 +++GV D + +D +SS L + Sbjct: 54 LVNGVADYRDDLDKELSSRLKQDGP 78 >gi|311739502|ref|ZP_07713337.1| RNA methyltransferase Sun [Corynebacterium pseudogenitalium ATCC 33035] gi|311305318|gb|EFQ81386.1| RNA methyltransferase Sun [Corynebacterium pseudogenitalium ATCC 33035] Length = 516 Score = 47.4 bits (112), Expect = 6e-04, Method: Composition-based stats. Identities = 18/107 (16%), Positives = 36/107 (33%), Gaps = 15/107 (14%) Query: 65 DLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVE 124 D + I +G + +D +I+ C + + + LR G +++ P Sbjct: 114 DAAFATEITYGTLRTLGVVDAVIAECSSRG--LEAISPAVVDALRLGTYQVLYTRVEPHA 171 Query: 125 VIISEYVCIAHDFFYGDEPKFINAV------------LDKVSRKEEI 159 + V + F N + LDK++ + EI Sbjct: 172 -AVDTTVRLVEAAGEVKAKGFANGIMRTISRTPAKTWLDKLAPQGEI 217 >gi|332090533|gb|EGI95631.1| ribosomal RNA small subunit methyltransferase B [Shigella boydii 3594-74] Length = 454 Score = 47.4 bits (112), Expect = 6e-04, Method: Composition-based stats. Identities = 26/145 (17%), Positives = 54/145 (37%), Gaps = 16/145 (11%) Query: 14 HRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVII 73 ++ R A QA+ Q+ G S + I+ ++ D + + Sbjct: 27 EKQRNLRSMAAQAVEQVVEQGQSLSNIL-------------PPLQQKVSDKDKALLQELC 73 Query: 74 HGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCI 133 GV+ +D LI+ + + + + ++ G+ +L+ +P ++E V Sbjct: 74 FGVLRTLSQLDWLINKLMARPMTGKQ--RTVHYLIMVGLYQLLYTR-IPPHAALAETVEG 130 Query: 134 AHDFFYGDEPKFINAVLDKVSRKEE 158 A IN VL + R++E Sbjct: 131 AIAIKRPQLKGLINGVLRQFQRQQE 155 >gi|242237890|ref|YP_002986071.1| 16S rRNA methyltransferase B [Dickeya dadantii Ech703] gi|242129947|gb|ACS84249.1| sun protein [Dickeya dadantii Ech703] Length = 431 Score = 47.4 bits (112), Expect = 6e-04, Method: Composition-based stats. Identities = 22/123 (17%), Positives = 45/123 (36%), Gaps = 4/123 (3%) Query: 37 TTEIISEYETYRFCADTELD-VESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKW 95 +I++ + L V+ D + + GV+ +D I + + Sbjct: 11 AAAVIAQVLDHGQSLSQSLPAVQRDIAEKDRALLQELCFGVLRVLPQLDWCIGQLMAK-- 68 Query: 96 SFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSR 155 + +L +L G+ +L+ +P ++E V A IN VL + R Sbjct: 69 PLTGKQRVLHYLLMVGLYQLLYTR-IPPHATLAETVEGATALKRPQLKGLINGVLRQFQR 127 Query: 156 KEE 158 ++E Sbjct: 128 QQE 130 >gi|255325042|ref|ZP_05366148.1| Fmu protein [Corynebacterium tuberculostearicum SK141] gi|255297607|gb|EET76918.1| Fmu protein [Corynebacterium tuberculostearicum SK141] Length = 516 Score = 47.4 bits (112), Expect = 7e-04, Method: Composition-based stats. Identities = 18/107 (16%), Positives = 36/107 (33%), Gaps = 15/107 (14%) Query: 65 DLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVE 124 D + I +G + +D +I+ C + + + LR G +++ P Sbjct: 114 DAAFATEITYGTLRTLGVVDAVIAECSSRG--LEAISPAVVDALRLGTYQVLYTRVEPHA 171 Query: 125 VIISEYVCIAHDFFYGDEPKFINAV------------LDKVSRKEEI 159 + V + F N + LDK++ + EI Sbjct: 172 -AVDTTVRLVEAAGEVKAKGFANGIMRTITRTPAKAWLDKLAPQGEI 217 >gi|270609376|ref|ZP_06221647.1| N utilization substance protein B-like protein [Haemophilus influenzae HK1212] gi|270318117|gb|EFA29359.1| N utilization substance protein B-like protein [Haemophilus influenzae HK1212] Length = 38 Score = 47.4 bits (112), Expect = 7e-04, Method: Composition-based stats. Identities = 14/41 (34%), Positives = 19/41 (46%), Gaps = 3/41 (7%) Query: 1 MTIQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEII 41 MT Q K +K R AR VQALY + G + ++ Sbjct: 1 MTEQ---KQVKKPSARRRARECTVQALYSWAVSGNTAEQVE 38 >gi|325283419|ref|YP_004255960.1| NusB/RsmB/TIM44 [Deinococcus proteolyticus MRP] gi|324315228|gb|ADY26343.1| NusB/RsmB/TIM44 [Deinococcus proteolyticus MRP] Length = 418 Score = 47.4 bits (112), Expect = 7e-04, Method: Composition-based stats. Identities = 24/112 (21%), Positives = 46/112 (41%), Gaps = 22/112 (19%) Query: 59 SVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCL-----TEKWSFSRLDMILCSILRAGVL 113 + D I++G + R + L ++ L + W ++L AG Sbjct: 41 AGLPARDAGLATHIVYGTLRRAPALRLALNPLLRGKTAPKAW----------ALLLAGAF 90 Query: 114 ELIECHSVPVEVIISEYVCIAHD--FFYGDEPKFINAVLDKV-SRKEEIKRS 162 E + P +++EYV +A + F P +NAVL +V + +E+ + Sbjct: 91 EKLY-LGTPEHAVVNEYVSLARESRFAP---PGLVNAVLRRVQAPQEDTPEA 138 >gi|110643527|ref|YP_671257.1| 16S rRNA methyltransferase B [Escherichia coli 536] gi|123343554|sp|Q0TCH3|RSMB_ECOL5 RecName: Full=Ribosomal RNA small subunit methyltransferase B; AltName: Full=16S rRNA m5C967 methyltransferase; AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase rsmB gi|110345119|gb|ABG71356.1| SUN protein [Escherichia coli 536] Length = 429 Score = 47.4 bits (112), Expect = 7e-04, Method: Composition-based stats. Identities = 26/147 (17%), Positives = 56/147 (38%), Gaps = 17/147 (11%) Query: 12 LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71 + +R + R A QA+ Q+ G S + I+ ++ D + Sbjct: 1 MKKQRNL-RSMAAQAIEQVVEQGQSLSNIL-------------PPLQQKVSDKDKALLQE 46 Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131 + GV+ +D LI+ + + + + ++ G+ +L+ +P ++E V Sbjct: 47 LCFGVLRTLSQLDWLINKLMARPMTGKQ--RTVHYLIMVGLYQLLYTR-IPPHAALAETV 103 Query: 132 CIAHDFFYGDEPKFINAVLDKVSRKEE 158 A IN VL + R+++ Sbjct: 104 EGAVAIKRPQLKGLINGVLRQFQRQQD 130 >gi|82778586|ref|YP_404935.1| 16S rRNA methyltransferase B [Shigella dysenteriae Sd197] gi|309785611|ref|ZP_07680242.1| ribosomal RNA small subunit methyltransferase B [Shigella dysenteriae 1617] gi|123742076|sp|Q32B61|RSMB_SHIDS RecName: Full=Ribosomal RNA small subunit methyltransferase B; AltName: Full=16S rRNA m5C967 methyltransferase; AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase rsmB gi|81242734|gb|ABB63444.1| conserved hypothetical protein [Shigella dysenteriae Sd197] gi|308926731|gb|EFP72207.1| ribosomal RNA small subunit methyltransferase B [Shigella dysenteriae 1617] Length = 429 Score = 47.4 bits (112), Expect = 7e-04, Method: Composition-based stats. Identities = 28/147 (19%), Positives = 55/147 (37%), Gaps = 17/147 (11%) Query: 12 LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71 + +R + R A QA+ Q+ G S + I+ ++ D + Sbjct: 1 MKKQRNL-RSMAAQAVEQVVEQGQSLSNIL-------------PPLQQKVSDKDKALLQE 46 Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131 + GV+ +D LI+ + S + ++ G+ +L+ +P ++E V Sbjct: 47 LCFGVLRTLSQLDWLINKLMAR--PMSGKQRTVHYLIMVGLYQLLYTR-IPPHAALAETV 103 Query: 132 CIAHDFFYGDEPKFINAVLDKVSRKEE 158 A IN VL + R++E Sbjct: 104 EGAIAIKRPQLKGLINGVLRQFQRQQE 130 >gi|126727795|ref|ZP_01743625.1| ribosomal RNA small subunit methyltransferase B, putative [Rhodobacterales bacterium HTCC2150] gi|126702922|gb|EBA02025.1| ribosomal RNA small subunit methyltransferase B, putative [Rhodobacterales bacterium HTCC2150] Length = 423 Score = 47.4 bits (112), Expect = 7e-04, Method: Composition-based stats. Identities = 27/145 (18%), Positives = 48/145 (33%), Gaps = 25/145 (17%) Query: 18 IARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVM 77 IAR AAV+ + ++ T++ S + D + + Sbjct: 12 IARRAAVRLIDEVLENQRPLTDLTSNFRAL--------------PAADKARAMRLAMTTL 57 Query: 78 DRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDF 137 D ++ L K + +ILR V E+ + V+ V + Sbjct: 58 RNVGRADQVLIPYL-RKPPLG----TVMNILRLAVTEICHEGAQDYAVV-DSAVAMTRKL 111 Query: 138 FYGDEPKF---INAVLDKVSRKEEI 159 + F +NAVL KV+R + Sbjct: 112 --RNSSHFAGLVNAVLRKVARDGQA 134 >gi|281180323|dbj|BAI56653.1| putative rRNA methylase [Escherichia coli SE15] Length = 429 Score = 47.4 bits (112), Expect = 7e-04, Method: Composition-based stats. Identities = 26/147 (17%), Positives = 56/147 (38%), Gaps = 17/147 (11%) Query: 12 LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71 + +R + R A QA+ Q+ G S + I+ ++ D + Sbjct: 1 MKKQRNL-RSMAAQAIEQVVEQGQSLSNIL-------------PPLQQKVSDKDKALLQE 46 Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131 + GV+ +D LI+ + + + + ++ G+ +L+ +P ++E V Sbjct: 47 LCFGVLRTLSQLDWLINKLMARPMTGKQ--RTVHYLIMVGLYQLLYTR-IPPHAALAETV 103 Query: 132 CIAHDFFYGDEPKFINAVLDKVSRKEE 158 A IN VL + R+++ Sbjct: 104 EGAVAIKRPQLKGLINGVLRQFQRQQD 130 >gi|256823833|ref|YP_003147796.1| sun protein [Kangiella koreensis DSM 16069] gi|256797372|gb|ACV28028.1| sun protein [Kangiella koreensis DSM 16069] Length = 443 Score = 47.4 bits (112), Expect = 7e-04, Method: Composition-based stats. Identities = 27/138 (19%), Positives = 47/138 (34%), Gaps = 17/138 (12%) Query: 20 RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79 R A AL+ I G S ++++ D FR ++ G Sbjct: 16 RQQACLALHAIAFEGRSANDVLNSI--------------QFEQGSDNSLFRALVLGSCRY 61 Query: 80 KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139 ++ + L + + D L ++ G+ +L VP ISE V + Sbjct: 62 FIRLESIAKQLLQKPFKPK--DQDLLCLIIIGLYQLEYSR-VPDHAAISETVSVCEQLKK 118 Query: 140 GDEPKFINAVLDKVSRKE 157 K +N VL R++ Sbjct: 119 PWATKLVNGVLRNFVRQQ 136 >gi|91212715|ref|YP_542701.1| 16S rRNA methyltransferase B [Escherichia coli UTI89] gi|117625571|ref|YP_858894.1| 16S rRNA methyltransferase B [Escherichia coli APEC O1] gi|218560350|ref|YP_002393263.1| 16S rRNA methyltransferase B [Escherichia coli S88] gi|237703018|ref|ZP_04533499.1| conserved hypothetical protein [Escherichia sp. 3_2_53FAA] gi|123265979|sp|Q1R644|RSMB_ECOUT RecName: Full=Ribosomal RNA small subunit methyltransferase B; AltName: Full=16S rRNA m5C967 methyltransferase; AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase rsmB gi|224493249|sp|A1AGI0|RSMB_ECOK1 RecName: Full=Ribosomal RNA small subunit methyltransferase B; AltName: Full=16S rRNA m5C967 methyltransferase; AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase rsmB gi|254766854|sp|B7MCQ4|RSMB_ECO45 RecName: Full=Ribosomal RNA small subunit methyltransferase B; AltName: Full=16S rRNA m5C967 methyltransferase; AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase rsmB gi|91074289|gb|ABE09170.1| SUN protein [Escherichia coli UTI89] gi|115514695|gb|ABJ02770.1| Sun protein [Escherichia coli APEC O1] gi|218367119|emb|CAR04893.1| 16S rRNA m5C967 methyltransferase, S-adenosyl-L-methionine-dependent [Escherichia coli S88] gi|226902282|gb|EEH88541.1| conserved hypothetical protein [Escherichia sp. 3_2_53FAA] gi|294490375|gb|ADE89131.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli IHE3034] gi|307628323|gb|ADN72627.1| 16S rRNA methyltransferase B [Escherichia coli UM146] gi|315284577|gb|EFU44022.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli MS 110-3] gi|323950202|gb|EGB46084.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli H252] gi|323954589|gb|EGB50372.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli H263] Length = 429 Score = 47.4 bits (112), Expect = 7e-04, Method: Composition-based stats. Identities = 26/147 (17%), Positives = 56/147 (38%), Gaps = 17/147 (11%) Query: 12 LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71 + +R + R A QA+ Q+ G S + I+ ++ D + Sbjct: 1 MKKQRNL-RSMAAQAIEQVVEQGQSLSNIL-------------PPLQQKVSDKDKALLQE 46 Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131 + GV+ +D LI+ + + + + ++ G+ +L+ +P ++E V Sbjct: 47 LCFGVLRTLSQLDWLINKLMARPMTGKQ--RTVHYLIMVGLYQLLYTR-IPPHAALAETV 103 Query: 132 CIAHDFFYGDEPKFINAVLDKVSRKEE 158 A IN VL + R+++ Sbjct: 104 EGAVAIKRPQLKGLINGVLRQFQRQQD 130 >gi|191174468|ref|ZP_03035969.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli F11] gi|300973968|ref|ZP_07172375.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli MS 200-1] gi|306816369|ref|ZP_07450507.1| 16S rRNA methyltransferase B [Escherichia coli NC101] gi|190905276|gb|EDV64914.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli F11] gi|222034997|emb|CAP77740.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli LF82] gi|300308978|gb|EFJ63498.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli MS 200-1] gi|305850765|gb|EFM51222.1| 16S rRNA methyltransferase B [Escherichia coli NC101] gi|312947839|gb|ADR28666.1| 16S rRNA methyltransferase B [Escherichia coli O83:H1 str. NRG 857C] gi|324014965|gb|EGB84184.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli MS 60-1] Length = 429 Score = 47.4 bits (112), Expect = 7e-04, Method: Composition-based stats. Identities = 26/147 (17%), Positives = 56/147 (38%), Gaps = 17/147 (11%) Query: 12 LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71 + +R + R A QA+ Q+ G S + I+ ++ D + Sbjct: 1 MKKQRNL-RSMAAQAIEQVVEQGQSLSNIL-------------PPLQQKVSDKDKALLQE 46 Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131 + GV+ +D LI+ + + + + ++ G+ +L+ +P ++E V Sbjct: 47 LCFGVLRTLSQLDWLINKLMARPMTGKQ--RTVHYLIMVGLYQLLYTR-IPPHAALAETV 103 Query: 132 CIAHDFFYGDEPKFINAVLDKVSRKEE 158 A IN VL + R+++ Sbjct: 104 EGAVAIKRPQLKGLINGVLRQFQRQQD 130 >gi|24371630|ref|NP_715672.1| sun protein [Shewanella oneidensis MR-1] gi|46396921|sp|Q8EKR0|RSMB_SHEON RecName: Full=Ribosomal RNA small subunit methyltransferase B; AltName: Full=16S rRNA m5C967 methyltransferase; AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase rsmB gi|24345386|gb|AAN53117.1|AE015454_11 sun protein [Shewanella oneidensis MR-1] Length = 428 Score = 47.4 bits (112), Expect = 7e-04, Method: Composition-based stats. Identities = 26/137 (18%), Positives = 48/137 (35%), Gaps = 15/137 (10%) Query: 20 RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79 R A +A++ + G S + + E + + + D + +GVM Sbjct: 4 RALAAKAIFDVLEKGVSLSVALPEQQKH------------LASGKDKALLAELCYGVMRT 51 Query: 80 KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139 I+ + CL + I+ +L G +L +P ISE + Sbjct: 52 LPQIEKRTAECLAK--PLKGKQRIIHQLLIVGCYQL-YFTRIPSHAAISETAEACRQLKF 108 Query: 140 GDEPKFINAVLDKVSRK 156 K +N VL + R+ Sbjct: 109 EGMVKVVNGVLRNIQRQ 125 >gi|317050738|ref|YP_004111854.1| Fmu (Sun) domain-containing protein [Desulfurispirillum indicum S5] gi|316945822|gb|ADU65298.1| Fmu (Sun) domain protein [Desulfurispirillum indicum S5] Length = 417 Score = 47.4 bits (112), Expect = 7e-04, Method: Composition-based stats. Identities = 17/88 (19%), Positives = 35/88 (39%), Gaps = 8/88 (9%) Query: 69 FRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIIS 128 FR ++ G + ++ ++ + L+ + ++L V + P ++ Sbjct: 43 FREMVSGAFRQLLLLESILKASCDR--PLRELEPFVKALLVLSVYRIYFLQD-PDYTVVD 99 Query: 129 EYVCIAHDFFYGDEPK-FINAVLDKVSR 155 E A+ D K F+N VL V+R Sbjct: 100 E----ANGLCAHDGQKSFVNGVLRNVTR 123 >gi|315297154|gb|EFU56434.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli MS 16-3] Length = 429 Score = 47.4 bits (112), Expect = 8e-04, Method: Composition-based stats. Identities = 26/147 (17%), Positives = 56/147 (38%), Gaps = 17/147 (11%) Query: 12 LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71 + +R + R A QA+ Q+ G S + I+ ++ D + Sbjct: 1 MKKQRNL-RSMAAQAIEQVVEQGQSLSNIL-------------PPLQQKVSDKDKALLQE 46 Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131 + GV+ +D LI+ + + + + ++ G+ +L+ +P ++E V Sbjct: 47 LCFGVLRTLSQLDWLINKLMARPMTGKQ--RTVHYLIMVGLYQLLYTR-IPPHAALAETV 103 Query: 132 CIAHDFFYGDEPKFINAVLDKVSRKEE 158 A IN VL + R+++ Sbjct: 104 EGAVAIKRPQLKGLINGVLRQFQRQQD 130 >gi|218706896|ref|YP_002414415.1| 16S rRNA methyltransferase B [Escherichia coli UMN026] gi|293406886|ref|ZP_06650810.1| 16S rRNA methyltransferase B [Escherichia coli FVEC1412] gi|298382627|ref|ZP_06992222.1| 16S rRNA methyltransferase B [Escherichia coli FVEC1302] gi|300896636|ref|ZP_07115153.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli MS 198-1] gi|331664901|ref|ZP_08365802.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli TA143] gi|254766859|sp|B7NDR0|RSMB_ECOLU RecName: Full=Ribosomal RNA small subunit methyltransferase B; AltName: Full=16S rRNA m5C967 methyltransferase; AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase rsmB gi|218433993|emb|CAR14910.1| 16S rRNA m5C967 methyltransferase, S-adenosyl-L-methionine-dependent [Escherichia coli UMN026] gi|284923295|emb|CBG36389.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli 042] gi|291425697|gb|EFE98731.1| 16S rRNA methyltransferase B [Escherichia coli FVEC1412] gi|298276463|gb|EFI17981.1| 16S rRNA methyltransferase B [Escherichia coli FVEC1302] gi|300359513|gb|EFJ75383.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli MS 198-1] gi|331057411|gb|EGI29397.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli TA143] Length = 429 Score = 47.0 bits (111), Expect = 8e-04, Method: Composition-based stats. Identities = 27/147 (18%), Positives = 56/147 (38%), Gaps = 17/147 (11%) Query: 12 LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71 + +R + R A QA+ Q+ G S + I+ ++ D + Sbjct: 1 MKKQRNL-RSMAAQAVEQVVEQGQSLSNIL-------------PPLQQKVSDKDKALLQE 46 Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131 + GV+ +D LI+ + + + + ++ G+ +L+ +P ++E V Sbjct: 47 LCFGVLRTLSQLDWLINKLMARPMTGKQ--RTVHYLIMVGLYQLLYTR-IPPHAALAETV 103 Query: 132 CIAHDFFYGDEPKFINAVLDKVSRKEE 158 A IN VL + R++E Sbjct: 104 EGAVAIKRPQLKGLINGVLRQFQRQQE 130 >gi|308449899|ref|XP_003088114.1| hypothetical protein CRE_16572 [Caenorhabditis remanei] gi|308249515|gb|EFO93467.1| hypothetical protein CRE_16572 [Caenorhabditis remanei] Length = 435 Score = 47.0 bits (111), Expect = 8e-04, Method: Composition-based stats. Identities = 27/136 (19%), Positives = 52/136 (38%), Gaps = 25/136 (18%) Query: 21 LAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRK 80 L AVQ G S +++++ ++ D + + G + + Sbjct: 21 LLAVQ-------NGQSLASVLNQHI-------------NIISERDRGLYHELTLGCLRQW 60 Query: 81 QHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYG 140 + + LT+ L+ S L G+ +++ C +P ISE V A + Sbjct: 61 YSLKAITLPLLTKPLDNEALE----SCLYLGLYQIL-CTRIPAHAAISETVNAAKQLGFE 115 Query: 141 DEPKFINAVLDKVSRK 156 +NA+L +VSR+ Sbjct: 116 PMSGLVNAILRRVSRE 131 >gi|215488588|ref|YP_002331019.1| 16S rRNA methyltransferase B [Escherichia coli O127:H6 str. E2348/69] gi|312968386|ref|ZP_07782596.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli 2362-75] gi|254766853|sp|B7UK12|RSMB_ECO27 RecName: Full=Ribosomal RNA small subunit methyltransferase B; AltName: Full=16S rRNA m5C967 methyltransferase; AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase rsmB gi|215266660|emb|CAS11099.1| 16S rRNA m5C967 methyltransferase, S-adenosyl-L-methionine-dependent [Escherichia coli O127:H6 str. E2348/69] gi|312287211|gb|EFR15121.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli 2362-75] gi|323189106|gb|EFZ74390.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli RN587/1] Length = 429 Score = 47.0 bits (111), Expect = 8e-04, Method: Composition-based stats. Identities = 27/147 (18%), Positives = 56/147 (38%), Gaps = 17/147 (11%) Query: 12 LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71 + +R + R A QA+ Q+ G S + I+ ++ D + Sbjct: 1 MKKQRNL-RSMAAQAVEQVVEQGQSLSNIL-------------PPLQQKVSDKDKALLQE 46 Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131 + GV+ +D LI+ + + + + ++ G+ +L+ +P ++E V Sbjct: 47 LCFGVLRTLSQLDWLINKLMARPMTGKQ--RTVHYLIMVGLYQLLYTR-IPPHAALAETV 103 Query: 132 CIAHDFFYGDEPKFINAVLDKVSRKEE 158 A IN VL + R++E Sbjct: 104 EGAVAIKRPQLKGLINGVLRQFQRQQE 130 >gi|254172425|ref|ZP_04879100.1| tRNA/rRNA cytosine-C5-methylase, NOL1/NOP2/Sun family, fused to N-terminal NusB regulator domain [Thermococcus sp. AM4] gi|214033354|gb|EEB74181.1| tRNA/rRNA cytosine-C5-methylase, NOL1/NOP2/Sun family, fused to N-terminal NusB regulator domain [Thermococcus sp. AM4] Length = 451 Score = 47.0 bits (111), Expect = 8e-04, Method: Composition-based stats. Identities = 20/88 (22%), Positives = 36/88 (40%), Gaps = 2/88 (2%) Query: 68 WFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVII 127 + + + ID +I+S L LD L ++LR G E+ VP + Sbjct: 49 LAHAYVFEIEKWRGKIDFIINSVL-RGSKVEDLDPYLANLLRIGTFEIHFRK-VPPAIAT 106 Query: 128 SEYVCIAHDFFYGDEPKFINAVLDKVSR 155 V + + F KF+NA++ + + Sbjct: 107 DSVVRVVKERFDFSRAKFVNALMHSIEK 134 >gi|332085437|gb|EGI90603.1| ribosomal RNA small subunit methyltransferase B [Shigella boydii 5216-82] Length = 429 Score = 47.0 bits (111), Expect = 8e-04, Method: Composition-based stats. Identities = 28/147 (19%), Positives = 57/147 (38%), Gaps = 17/147 (11%) Query: 12 LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71 + +R + R A QA+ Q+ G S + I+ ++ D + Sbjct: 1 MKKQRNL-RSMAAQAVEQVVEQGQSLSNIL-------------PPLQQKVSDKDKALLQE 46 Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131 + GV+ +D LI+ + + + + ++ G+ +L+ H +P ++E V Sbjct: 47 LCFGVLRTLSQLDWLINKLMARPMTGKQ--RTVHYLIMVGLYQLLYTH-IPPHAALAETV 103 Query: 132 CIAHDFFYGDEPKFINAVLDKVSRKEE 158 A IN VL + R++E Sbjct: 104 EGAIAIKRPQLKGLINGVLRQFQRRQE 130 >gi|255067827|ref|ZP_05319682.1| ribosomal RNA small subunit methyltransferase B [Neisseria sicca ATCC 29256] gi|255047918|gb|EET43382.1| ribosomal RNA small subunit methyltransferase B [Neisseria sicca ATCC 29256] Length = 419 Score = 47.0 bits (111), Expect = 9e-04, Method: Composition-based stats. Identities = 25/126 (19%), Positives = 50/126 (39%), Gaps = 17/126 (13%) Query: 34 GCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTE 93 G + +++++ A EL V+ D+ + G + +++ L + Sbjct: 20 GRNLQDVLAQIRA----AHPELTVQENGALQDIAY------GCQRYLGSLKHMLAQMLKK 69 Query: 94 KWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVC-IAHDFFYGDEPKFINAVLDK 152 + L S+L A + +L + P V+ +E V IA G F NA+L + Sbjct: 70 --PID--NPQLESLLLAAMYQLHYTRNAPHAVV-NEAVESIAKI-GRGQYRSFANAILRR 123 Query: 153 VSRKEE 158 R+ + Sbjct: 124 FLRERD 129 >gi|15803816|ref|NP_289850.1| 16S rRNA methyltransferase B [Escherichia coli O157:H7 EDL933] gi|168752263|ref|ZP_02777285.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli O157:H7 str. EC4113] gi|168758516|ref|ZP_02783523.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli O157:H7 str. EC4401] gi|168764971|ref|ZP_02789978.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli O157:H7 str. EC4501] gi|168769150|ref|ZP_02794157.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli O157:H7 str. EC4486] gi|168777854|ref|ZP_02802861.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli O157:H7 str. EC4196] gi|168783855|ref|ZP_02808862.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli O157:H7 str. EC4076] gi|168786178|ref|ZP_02811185.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli O157:H7 str. EC869] gi|168802718|ref|ZP_02827725.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli O157:H7 str. EC508] gi|195939836|ref|ZP_03085218.1| 16S rRNA methyltransferase B [Escherichia coli O157:H7 str. EC4024] gi|208808123|ref|ZP_03250460.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli O157:H7 str. EC4206] gi|208812777|ref|ZP_03254106.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli O157:H7 str. EC4045] gi|208820338|ref|ZP_03260658.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli O157:H7 str. EC4042] gi|209396232|ref|YP_002272745.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli O157:H7 str. EC4115] gi|217326360|ref|ZP_03442444.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli O157:H7 str. TW14588] gi|254795225|ref|YP_003080062.1| 16S rRNA methyltransferase B [Escherichia coli O157:H7 str. TW14359] gi|261224593|ref|ZP_05938874.1| 16S rRNA m5C967 methyltransferase [Escherichia coli O157:H7 str. FRIK2000] gi|261254513|ref|ZP_05947046.1| 16S rRNA m5C967 methyltransferase [Escherichia coli O157:H7 str. FRIK966] gi|46396973|sp|Q8XEE5|RSMB_ECO57 RecName: Full=Ribosomal RNA small subunit methyltransferase B; AltName: Full=16S rRNA m5C967 methyltransferase; AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase rsmB gi|224493246|sp|B5YT08|RSMB_ECO5E RecName: Full=Ribosomal RNA small subunit methyltransferase B; AltName: Full=16S rRNA m5C967 methyltransferase; AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase rsmB gi|12517918|gb|AAG58410.1|AE005556_3 orf, hypothetical protein [Escherichia coli O157:H7 str. EDL933] gi|187767005|gb|EDU30849.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli O157:H7 str. EC4196] gi|188013841|gb|EDU51963.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli O157:H7 str. EC4113] gi|188998877|gb|EDU67863.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli O157:H7 str. EC4076] gi|189354681|gb|EDU73100.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli O157:H7 str. EC4401] gi|189361764|gb|EDU80183.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli O157:H7 str. EC4486] gi|189365121|gb|EDU83537.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli O157:H7 str. EC4501] gi|189373894|gb|EDU92310.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli O157:H7 str. EC869] gi|189375353|gb|EDU93769.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli O157:H7 str. EC508] gi|208727924|gb|EDZ77525.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli O157:H7 str. EC4206] gi|208734054|gb|EDZ82741.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli O157:H7 str. EC4045] gi|208740461|gb|EDZ88143.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli O157:H7 str. EC4042] gi|209157632|gb|ACI35065.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli O157:H7 str. EC4115] gi|209757340|gb|ACI76982.1| RNA methyltransferase [Escherichia coli] gi|209757342|gb|ACI76983.1| RNA methyltransferase [Escherichia coli] gi|209757346|gb|ACI76985.1| RNA methyltransferase [Escherichia coli] gi|217322581|gb|EEC31005.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli O157:H7 str. TW14588] gi|254594625|gb|ACT73986.1| 16S rRNA m5C967 methyltransferase [Escherichia coli O157:H7 str. TW14359] gi|320191677|gb|EFW66327.1| Ribosomal RNA small subunit methyltransferase B [Escherichia coli O157:H7 str. EC1212] gi|320639593|gb|EFX09187.1| 16S rRNA methyltransferase B [Escherichia coli O157:H7 str. G5101] gi|326342537|gb|EGD66311.1| Ribosomal RNA small subunit methyltransferase B [Escherichia coli O157:H7 str. 1044] gi|326344524|gb|EGD68273.1| Ribosomal RNA small subunit methyltransferase B [Escherichia coli O157:H7 str. 1125] Length = 429 Score = 47.0 bits (111), Expect = 9e-04, Method: Composition-based stats. Identities = 27/147 (18%), Positives = 56/147 (38%), Gaps = 17/147 (11%) Query: 12 LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71 + +R + R A QA+ Q+ G S + I+ ++ D + Sbjct: 1 MKKQRNL-RSMAAQAVEQVVEQGQSLSNIL-------------PPLQQKVSDKDKALLQE 46 Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131 + GV+ +D LI+ + + + + ++ G+ +L+ +P ++E V Sbjct: 47 LCFGVLRTLSQLDWLINKSMARPMTGKQ--RTVHYLIMVGLYQLLYTR-IPPHAALAETV 103 Query: 132 CIAHDFFYGDEPKFINAVLDKVSRKEE 158 A IN VL + R++E Sbjct: 104 EGAIAIKRPQLKGLINGVLRQFQRQQE 130 >gi|291284647|ref|YP_003501465.1| Ribosomal RNA small subunit methyltransferase B (rRNA (cytosine-C(5)-)-methyltransferase) [Escherichia coli O55:H7 str. CB9615] gi|209757338|gb|ACI76981.1| RNA methyltransferase [Escherichia coli] gi|209757344|gb|ACI76984.1| RNA methyltransferase [Escherichia coli] gi|290764520|gb|ADD58481.1| Ribosomal RNA small subunit methyltransferase B (rRNA (cytosine-C(5)-)-methyltransferase) [Escherichia coli O55:H7 str. CB9615] gi|320645091|gb|EFX14107.1| 16S rRNA methyltransferase B [Escherichia coli O157:H- str. 493-89] gi|320650402|gb|EFX18868.1| 16S rRNA methyltransferase B [Escherichia coli O157:H- str. H 2687] gi|320661379|gb|EFX28794.1| 16S rRNA methyltransferase B [Escherichia coli O55:H7 str. USDA 5905] Length = 429 Score = 47.0 bits (111), Expect = 9e-04, Method: Composition-based stats. Identities = 27/147 (18%), Positives = 56/147 (38%), Gaps = 17/147 (11%) Query: 12 LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71 + +R + R A QA+ Q+ G S + I+ ++ D + Sbjct: 1 MKKQRNL-RSMAAQAVEQVVEQGQSLSNIL-------------PPLQQKVSDKDKALLQE 46 Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131 + GV+ +D LI+ + + + + ++ G+ +L+ +P ++E V Sbjct: 47 LCFGVLRTLSQLDWLINKSMARPMTGKQ--RTVHYLIMVGLYQLLYTR-IPPHAALAETV 103 Query: 132 CIAHDFFYGDEPKFINAVLDKVSRKEE 158 A IN VL + R++E Sbjct: 104 EGAIAIKRPQLKGLINGVLRQFQRQQE 130 >gi|170769473|ref|ZP_02903926.1| ribosomal RNA small subunit methyltransferase B [Escherichia albertii TW07627] gi|170121530|gb|EDS90461.1| ribosomal RNA small subunit methyltransferase B [Escherichia albertii TW07627] Length = 429 Score = 47.0 bits (111), Expect = 0.001, Method: Composition-based stats. Identities = 21/130 (16%), Positives = 50/130 (38%), Gaps = 3/130 (2%) Query: 29 QIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLIS 88 Q ++ + + E + ++ ++ D + + GV+ +D LI+ Sbjct: 4 QRNLRSMAAQAVEQVVEQGQSLSNILPPLQQKVSDKDKALLQELCFGVLRTLSQLDWLIN 63 Query: 89 SCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINA 148 +T + + + ++ G+ +L+ +P ++E V A IN Sbjct: 64 KLMTRPMTGKQ--RTVHYLIMVGLYQLLYTR-IPPHAALAETVEGAVAIKRPQLKGLING 120 Query: 149 VLDKVSRKEE 158 VL + R++E Sbjct: 121 VLRQFQRQQE 130 >gi|333014516|gb|EGK33864.1| ribosomal RNA small subunit methyltransferase B [Shigella flexneri K-227] Length = 454 Score = 47.0 bits (111), Expect = 0.001, Method: Composition-based stats. Identities = 20/130 (15%), Positives = 49/130 (37%), Gaps = 3/130 (2%) Query: 29 QIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLIS 88 Q ++ + + E + ++ ++ D + + GV+ +D LI+ Sbjct: 29 QRNLRSMAAHAVEQVVEQGQSLSNILPPLQQKVSDKDKALLQELCFGVLRTLSQLDWLIN 88 Query: 89 SCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINA 148 + + + + ++ G+ +L+ +P ++E V A IN Sbjct: 89 KLMARPMTGKQ--RTVHYLIMVGLYQLLYTR-IPPHAALAETVEGAIAIKRPQLKGLING 145 Query: 149 VLDKVSRKEE 158 VL + R++E Sbjct: 146 VLRQFQRRQE 155 >gi|323966250|gb|EGB61685.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli M863] gi|327250937|gb|EGE62630.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli STEC_7v] Length = 429 Score = 47.0 bits (111), Expect = 0.001, Method: Composition-based stats. Identities = 20/130 (15%), Positives = 49/130 (37%), Gaps = 3/130 (2%) Query: 29 QIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLIS 88 Q ++ + + E + ++ ++ D + + GV+ +D LI+ Sbjct: 4 QRNLRSMAAQAVEQVVEQGQSLSNILPPLQQKVSDKDKALLQELCFGVLRTLSQLDWLIN 63 Query: 89 SCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINA 148 + + + + ++ G+ +L+ +P ++E V A IN Sbjct: 64 KLMARPMTGKQ--RTVHYLIMVGLYQLLYTR-IPPHAALAETVEGAVAIKRPQLKGLING 120 Query: 149 VLDKVSRKEE 158 VL + R++E Sbjct: 121 VLRQFQRQQE 130 >gi|310778567|ref|YP_003966900.1| sun protein [Ilyobacter polytropus DSM 2926] gi|309747890|gb|ADO82552.1| sun protein [Ilyobacter polytropus DSM 2926] Length = 434 Score = 47.0 bits (111), Expect = 0.001, Method: Composition-based stats. Identities = 21/128 (16%), Positives = 45/128 (35%), Gaps = 15/128 (11%) Query: 39 EIISEYETYRFCAD--TELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEK-- 94 +++ E+E ++ E E+ + + + +GV+ +D I T+K Sbjct: 9 KLLGEFEDGKYSNILLNEYFRENNLSRGEKAFITEVFYGVIRNIIFLDYQIDKRATKKVH 68 Query: 95 --WSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDK 152 W L ++LR + S V E +A +F N ++ Sbjct: 69 RRW--------LRNLLRISYYQAYFMRSDDAGVAW-EATELAKQKLGVYVGRFANGIVRS 119 Query: 153 VSRKEEIK 160 R+ + + Sbjct: 120 FMREMDQE 127 >gi|89092289|ref|ZP_01165243.1| Fmu, rRNA SAM-dependent methyltransferase [Oceanospirillum sp. MED92] gi|89083377|gb|EAR62595.1| Fmu, rRNA SAM-dependent methyltransferase [Oceanospirillum sp. MED92] Length = 432 Score = 47.0 bits (111), Expect = 0.001, Method: Composition-based stats. Identities = 15/102 (14%), Positives = 40/102 (39%), Gaps = 3/102 (2%) Query: 57 VESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELI 116 +E D R + +G + ++ ++ + + +D+ ++ G+ ++ Sbjct: 30 IERRCADKDRGLLRELCYGTLRYYPQLNRVLQLLQNRPFKYKDIDV--RALALVGLYQIQ 87 Query: 117 ECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEE 158 +P I E V + K +NA+L + R+++ Sbjct: 88 HTR-IPAHAAIHETVEACKELNKPGAAKLLNAILRRFQREQD 128 >gi|331684931|ref|ZP_08385517.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli H299] gi|331077302|gb|EGI48514.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli H299] Length = 429 Score = 47.0 bits (111), Expect = 0.001, Method: Composition-based stats. Identities = 27/147 (18%), Positives = 56/147 (38%), Gaps = 17/147 (11%) Query: 12 LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71 + +R + R A QA+ Q+ G S + I+ ++ D + Sbjct: 1 MKKQRNL-RSMAAQAVEQVVEQGQSLSNIL-------------PPLQQKVSDKDKALLQE 46 Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131 + GV+ +D LI+ + + + + ++ G+ +L+ +P ++E V Sbjct: 47 LCFGVLRTLSQLDWLINKLMARPMTGKQ--RTVHYLIMVGLYQLLYTR-IPPHAALAETV 103 Query: 132 CIAHDFFYGDEPKFINAVLDKVSRKEE 158 A IN VL + R++E Sbjct: 104 EGAIAIKRPQLKGLINGVLRQFQRQQE 130 >gi|297517906|ref|ZP_06936292.1| 16S rRNA methyltransferase B [Escherichia coli OP50] Length = 259 Score = 47.0 bits (111), Expect = 0.001, Method: Composition-based stats. Identities = 27/147 (18%), Positives = 56/147 (38%), Gaps = 17/147 (11%) Query: 12 LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71 + +R + R A QA+ Q+ G S + I+ ++ D + Sbjct: 1 MKKQRNL-RSMAAQAVEQVVEQGQSLSNIL-------------PPLQQKVSDKDKALLQE 46 Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131 + GV+ +D LI+ + + + + ++ G+ +L+ +P ++E V Sbjct: 47 LCFGVLRTLSQLDWLINKLMARPMTGKQ--RTVHYLIMVGLYQLLYTR-IPPHAALAETV 103 Query: 132 CIAHDFFYGDEPKFINAVLDKVSRKEE 158 A IN VL + R++E Sbjct: 104 EGAIAIKRPQLKGLINGVLRQFQRQQE 130 >gi|218550564|ref|YP_002384355.1| 16S rRNA methyltransferase B [Escherichia fergusonii ATCC 35469] gi|254766861|sp|B7LRQ5|RSMB_ESCF3 RecName: Full=Ribosomal RNA small subunit methyltransferase B; AltName: Full=16S rRNA m5C967 methyltransferase; AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase rsmB gi|218358105|emb|CAQ90752.1| 16S rRNA m5C967 methyltransferase, S-adenosyl-L-methionine-dependent [Escherichia fergusonii ATCC 35469] gi|324111967|gb|EGC05946.1| ribosomal RNA small subunit methyltransferase B [Escherichia fergusonii B253] Length = 429 Score = 47.0 bits (111), Expect = 0.001, Method: Composition-based stats. Identities = 20/130 (15%), Positives = 49/130 (37%), Gaps = 3/130 (2%) Query: 29 QIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLIS 88 Q ++ + + E + ++ ++ D + + GV+ +D LI+ Sbjct: 4 QRNLRSMAAQAVEQVVEQGQSLSNILPPLQQKVSDKDKALLQELCFGVLRTLSQLDWLIN 63 Query: 89 SCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINA 148 + + + + ++ G+ +L+ +P ++E V A IN Sbjct: 64 KLMARPMTGKQ--RTVHYLIMVGLYQLLYTR-IPPHAALAETVEGAVAIKRPQLKGLING 120 Query: 149 VLDKVSRKEE 158 VL + R++E Sbjct: 121 VLRQFQRQQE 130 >gi|74313807|ref|YP_312226.1| 16S rRNA methyltransferase B [Shigella sonnei Ss046] gi|123759539|sp|Q3YWX1|RSMB_SHISS RecName: Full=Ribosomal RNA small subunit methyltransferase B; AltName: Full=16S rRNA m5C967 methyltransferase; AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase rsmB gi|73857284|gb|AAZ89991.1| conserved hypothetical protein [Shigella sonnei Ss046] Length = 429 Score = 46.6 bits (110), Expect = 0.001, Method: Composition-based stats. Identities = 27/147 (18%), Positives = 56/147 (38%), Gaps = 17/147 (11%) Query: 12 LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71 + +R + R A QA+ Q+ G S + I+ ++ D + Sbjct: 1 MKKQRNL-RSMAAQAVEQVVEQGQSLSNIL-------------PPLQQKVSDKDKALLQE 46 Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131 + GV+ +D LI+ + + + + ++ G+ +L+ +P ++E V Sbjct: 47 LCFGVLRTLSQLDWLINKLMARPMTGKQ--RTVHYLIMVGLYQLLYTR-IPPHAALAETV 103 Query: 132 CIAHDFFYGDEPKFINAVLDKVSRKEE 158 A IN VL + R++E Sbjct: 104 EGAIAIKRPQLKGLINGVLRQFQRQQE 130 >gi|320187010|gb|EFW61722.1| Ribosomal RNA small subunit methyltransferase B [Shigella flexneri CDC 796-83] Length = 429 Score = 46.6 bits (110), Expect = 0.001, Method: Composition-based stats. Identities = 27/147 (18%), Positives = 56/147 (38%), Gaps = 17/147 (11%) Query: 12 LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71 + +R + R A QA+ Q+ G S + I+ ++ D + Sbjct: 1 MKKQRNL-RSMAAQAVEQVVEQGQSLSNIL-------------PPLQQKVSDKDKALLQE 46 Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131 + GV+ +D LI+ + + + + ++ G+ +L+ +P ++E V Sbjct: 47 LCFGVLRTLSQLDWLINKLMARPMTGKQ--RTVHYLIMVGLYQLLYTR-IPPHAALAETV 103 Query: 132 CIAHDFFYGDEPKFINAVLDKVSRKEE 158 A IN VL + R++E Sbjct: 104 EGAIAIKRPQLKGLINGVLRQFQRQQE 130 >gi|300903537|ref|ZP_07121459.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli MS 84-1] gi|301305498|ref|ZP_07211590.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli MS 124-1] gi|300404410|gb|EFJ87948.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli MS 84-1] gi|300839193|gb|EFK66953.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli MS 124-1] gi|315255872|gb|EFU35840.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli MS 85-1] Length = 429 Score = 46.6 bits (110), Expect = 0.001, Method: Composition-based stats. Identities = 27/147 (18%), Positives = 56/147 (38%), Gaps = 17/147 (11%) Query: 12 LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71 + +R + R A QA+ Q+ G S + I+ ++ D + Sbjct: 1 MKKQRNL-RSMAAQAVEQVVEQGQSLSNIL-------------PPLQQKVSDKDKALLQE 46 Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131 + GV+ +D LI+ + + + + ++ G+ +L+ +P ++E V Sbjct: 47 LCFGVLRTLSQLDWLINKLMARPMTGKQ--RTVHYLIMVGLYQLLYTR-IPPHAALAETV 103 Query: 132 CIAHDFFYGDEPKFINAVLDKVSRKEE 158 A IN VL + R++E Sbjct: 104 EGAIAIKRPQLKGLINGVLRQFQRQQE 130 >gi|331654881|ref|ZP_08355880.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli M718] gi|331046896|gb|EGI18974.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli M718] Length = 429 Score = 46.6 bits (110), Expect = 0.001, Method: Composition-based stats. Identities = 27/147 (18%), Positives = 56/147 (38%), Gaps = 17/147 (11%) Query: 12 LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71 + +R + R A QA+ Q+ G S + I+ ++ D + Sbjct: 1 MKKQRNL-RSMAAQAVEQVVEQGQSLSNIL-------------PPLQQKVSDKDKALLQE 46 Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131 + GV+ +D LI+ + + + + ++ G+ +L+ +P ++E V Sbjct: 47 LCFGVLRTLSQLDWLINKLMARPMTGKQ--RTVHYLIMVGLYQLLYTR-IPPHAALAETV 103 Query: 132 CIAHDFFYGDEPKFINAVLDKVSRKEE 158 A IN VL + R++E Sbjct: 104 EGAIAIKRPQLKGLINGVLRQFQRQQE 130 >gi|187732355|ref|YP_001881972.1| 16S rRNA methyltransferase B [Shigella boydii CDC 3083-94] gi|224493269|sp|B2U2Q6|RSMB_SHIB3 RecName: Full=Ribosomal RNA small subunit methyltransferase B; AltName: Full=16S rRNA m5C967 methyltransferase; AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase rsmB gi|187429347|gb|ACD08621.1| ribosomal RNA small subunit methyltransferase B [Shigella boydii CDC 3083-94] Length = 429 Score = 46.6 bits (110), Expect = 0.001, Method: Composition-based stats. Identities = 27/147 (18%), Positives = 56/147 (38%), Gaps = 17/147 (11%) Query: 12 LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71 + +R + R A QA+ Q+ G S + I+ ++ D + Sbjct: 1 MKKQRNL-RSMAAQAVEQVVEQGQSLSNIL-------------PPLQQKVSDKDKALLQE 46 Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131 + GV+ +D LI+ + + + + ++ G+ +L+ +P ++E V Sbjct: 47 LCFGVLRTLSQLDWLINKLMARPMTGKQ--RTVHYLIMVGLYQLLYTR-IPPHAALAETV 103 Query: 132 CIAHDFFYGDEPKFINAVLDKVSRKEE 158 A IN VL + R++E Sbjct: 104 EGAIAIKRPQLKGLINGVLRQFQRQQE 130 >gi|315617091|gb|EFU97701.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli 3431] Length = 429 Score = 46.6 bits (110), Expect = 0.001, Method: Composition-based stats. Identities = 27/147 (18%), Positives = 56/147 (38%), Gaps = 17/147 (11%) Query: 12 LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71 + +R + R A QA+ Q+ G S + I+ ++ D + Sbjct: 1 MKKQRNL-RSMAAQAVEQVVEQGQSLSNIL-------------PPLQQKVSDKDKALLQE 46 Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131 + GV+ +D LI+ + + + + ++ G+ +L+ +P ++E V Sbjct: 47 LCFGVLRTLSQLDWLINKLMARPMTGKQ--RTVHYLIMVGLYQLLYTR-IPPHAALAETV 103 Query: 132 CIAHDFFYGDEPKFINAVLDKVSRKEE 158 A IN VL + R++E Sbjct: 104 EGAIAIKRPQLKGLINGVLRQFQRQQE 130 >gi|293416707|ref|ZP_06659344.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli B185] gi|291431283|gb|EFF04268.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli B185] Length = 429 Score = 46.6 bits (110), Expect = 0.001, Method: Composition-based stats. Identities = 27/147 (18%), Positives = 56/147 (38%), Gaps = 17/147 (11%) Query: 12 LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71 + +R + R A QA+ Q+ G S + I+ ++ D + Sbjct: 1 MKKQRNL-RSMAAQAVEQVVEQGQSLSNIL-------------PPLQQKVSDKDKALLQE 46 Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131 + GV+ +D LI+ + + + + ++ G+ +L+ +P ++E V Sbjct: 47 LCFGVLRTLSQLDWLINKLMARPMTGKQ--RTVHYLIMVGLYQLLYTR-IPPHAALAETV 103 Query: 132 CIAHDFFYGDEPKFINAVLDKVSRKEE 158 A IN VL + R++E Sbjct: 104 EGAIAIKRPQLKGLINGVLRQFQRQQE 130 >gi|262376795|ref|ZP_06070022.1| ribosomal RNA small subunit methyltransferase B [Acinetobacter lwoffii SH145] gi|262308140|gb|EEY89276.1| ribosomal RNA small subunit methyltransferase B [Acinetobacter lwoffii SH145] Length = 435 Score = 46.6 bits (110), Expect = 0.001, Method: Composition-based stats. Identities = 29/138 (21%), Positives = 53/138 (38%), Gaps = 25/138 (18%) Query: 21 LAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRK 80 L AVQ G S +++++ ++ D + + G + + Sbjct: 21 LLAVQ-------NGQSLASVLNQHI-------------NIVSERDRGLYHELTLGCLRQW 60 Query: 81 QHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYG 140 + + LT+ + L S L G+ +++ C +P ISE V A + Sbjct: 61 HGLKAITLPLLTK--PLD--NQALESCLYLGLYQIL-CTRIPAHAAISETVTAAKQLGFE 115 Query: 141 DEPKFINAVLDKVSRKEE 158 +NAVL +VSR+ E Sbjct: 116 PLSGLVNAVLRRVSRETE 133 >gi|82545651|ref|YP_409598.1| 16S rRNA methyltransferase B [Shigella boydii Sb227] gi|123728324|sp|Q31VY8|RSMB_SHIBS RecName: Full=Ribosomal RNA small subunit methyltransferase B; AltName: Full=16S rRNA m5C967 methyltransferase; AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase rsmB gi|81247062|gb|ABB67770.1| conserved hypothetical protein [Shigella boydii Sb227] gi|320173933|gb|EFW49109.1| Ribosomal RNA small subunit methyltransferase B [Shigella dysenteriae CDC 74-1112] Length = 429 Score = 46.6 bits (110), Expect = 0.001, Method: Composition-based stats. Identities = 27/147 (18%), Positives = 56/147 (38%), Gaps = 17/147 (11%) Query: 12 LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71 + +R + R A QA+ Q+ G S + I+ ++ D + Sbjct: 1 MKKQRNL-RSMAAQAVEQVVEQGQSLSNIL-------------PPLQQKVSDKDKALLQE 46 Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131 + GV+ +D LI+ + + + + ++ G+ +L+ +P ++E V Sbjct: 47 LCFGVLRTLSQLDWLINKLMARPMTGKQ--RTVHYLIMVGLYQLLYTR-IPPHAALAETV 103 Query: 132 CIAHDFFYGDEPKFINAVLDKVSRKEE 158 A IN VL + R++E Sbjct: 104 EGAIAIKRPQLKGLINGVLRQFQRQQE 130 >gi|312864944|ref|ZP_07725174.1| ribosomal RNA small subunit methyltransferase B [Streptococcus downei F0415] gi|311099564|gb|EFQ57778.1| ribosomal RNA small subunit methyltransferase B [Streptococcus downei F0415] Length = 439 Score = 46.6 bits (110), Expect = 0.001, Method: Composition-based stats. Identities = 26/145 (17%), Positives = 54/145 (37%), Gaps = 15/145 (10%) Query: 12 LSHR-RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFR 70 +++R AR A++ L E+ E Y A S D Sbjct: 1 MANRLEKSARGLALKIL----------EEVFQE-GAYSNLALKRGLSGSSLSQQDKALVT 49 Query: 71 VIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEY 130 +++G + RK ++ ++ + ++ L + + + +P +++E Sbjct: 50 ELVYGTVARKITLEWQLAHVIEDRDKLESWVYTLLMLSLYQL---LYLDKIPSHAVLNEA 106 Query: 131 VCIAHDFFYGDEPKFINAVLDKVSR 155 V +A K +NAVL K+S+ Sbjct: 107 VELAKSRSQRGADKLVNAVLRKLSK 131 >gi|182415839|ref|YP_001820905.1| Fmu (Sun) domain-containing protein [Opitutus terrae PB90-1] gi|177843053|gb|ACB77305.1| Fmu (Sun) domain protein [Opitutus terrae PB90-1] Length = 488 Score = 46.6 bits (110), Expect = 0.001, Method: Composition-based stats. Identities = 20/145 (13%), Positives = 43/145 (29%), Gaps = 32/145 (22%) Query: 37 TTEIISEYETYRFCADTELD-VESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKW 95 +++ + R D L+ + + + ++ G + ID I ++ Sbjct: 15 AARLLARWLDRRERVDELLESLGGSLTGTERARCQHLVFGAIRHFGRIDAAIGRLVSHSP 74 Query: 96 SFSRLDMILCSILRAGVLELI-------------------ECHSVPVEVI-------ISE 129 F+ ++L ELI P V+ + Sbjct: 75 RFA-----TRAVLLVAGFELIEARAERGGAPTRASEAGTTNAPDQPTPVVDGRVAKIVHH 129 Query: 130 YVCIAHDFFYGDEPKFINAVLDKVS 154 V E + +NAV+ K++ Sbjct: 130 AVEQTKQLASPAEARMVNAVVRKLA 154 >gi|83309246|ref|YP_419510.1| tRNA and rRNA cytosine-C5-methylase [Magnetospirillum magneticum AMB-1] gi|82944087|dbj|BAE48951.1| tRNA and rRNA cytosine-C5-methylase [Magnetospirillum magneticum AMB-1] Length = 431 Score = 46.6 bits (110), Expect = 0.001, Method: Composition-based stats. Identities = 29/137 (21%), Positives = 49/137 (35%), Gaps = 15/137 (10%) Query: 20 RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79 R AV L + G +++ + R D + R+++ + R Sbjct: 10 RAIAVDLLSMVLDKGRLLDDVLDDSRLSRLE------------DRDRGFVRMLLGTTLRR 57 Query: 80 KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139 ID LI CL + + LR G+ +L+ V IS V + Sbjct: 58 LGQIDTLIEHCLDKPMRAGAAGA-EHA-LRLGICQLLF-LDVAPHAAISTTVDLVKGSKL 114 Query: 140 GDEPKFINAVLDKVSRK 156 K +NAVL ++ R+ Sbjct: 115 AGFAKLLNAVLRRLDRE 131 >gi|323173925|gb|EFZ59553.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli LT-68] Length = 429 Score = 46.6 bits (110), Expect = 0.001, Method: Composition-based stats. Identities = 20/130 (15%), Positives = 49/130 (37%), Gaps = 3/130 (2%) Query: 29 QIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLIS 88 Q ++ + + E + ++ ++ D + + GV+ +D LI+ Sbjct: 4 QRNLRSMAAQAVEQVVEQGQSLSNILPPLQQKVSDKDKALLQELCFGVLRTLSQLDWLIN 63 Query: 89 SCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINA 148 + + + + ++ G+ +L+ +P ++E V A IN Sbjct: 64 KLMARPMTGKQ--RTVHYLIMVGLYQLLYTR-IPPHAALAETVEGAIAIKRPQLKGLING 120 Query: 149 VLDKVSRKEE 158 VL + R++E Sbjct: 121 VLRQFQRQQE 130 >gi|161870942|ref|YP_001600122.1| 16S RNA methyltransferase [Neisseria meningitidis 053442] gi|161596495|gb|ABX74155.1| 16S RNA methyltransferase [Neisseria meningitidis 053442] Length = 419 Score = 46.6 bits (110), Expect = 0.001, Method: Composition-based stats. Identities = 25/126 (19%), Positives = 49/126 (38%), Gaps = 17/126 (13%) Query: 34 GCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTE 93 G + ++++E A +L + D+ + G + +++ L + Sbjct: 20 GRNLQDVLAEIRA----AHPQLTAQENGALQDIAY------GCQRYLGSLKHMLAQMLKK 69 Query: 94 KWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVC-IAHDFFYGDEPKFINAVLDK 152 + L S+L A + +L + P V+ +E V IA G F NAVL + Sbjct: 70 --PID--NPQLESLLLAALYQLHYTRNAPHAVV-NEAVESIAKI-GRGQYRSFANAVLRR 123 Query: 153 VSRKEE 158 R+ + Sbjct: 124 FLRERD 129 >gi|157157639|ref|YP_001464756.1| 16S rRNA methyltransferase B [Escherichia coli E24377A] gi|193066472|ref|ZP_03047516.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli E22] gi|193071559|ref|ZP_03052468.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli E110019] gi|194430276|ref|ZP_03062771.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli B171] gi|209920754|ref|YP_002294838.1| 16S rRNA methyltransferase B [Escherichia coli SE11] gi|218555846|ref|YP_002388759.1| 16S rRNA methyltransferase B [Escherichia coli IAI1] gi|218696981|ref|YP_002404648.1| 16S rRNA methyltransferase B [Escherichia coli 55989] gi|256020647|ref|ZP_05434512.1| 16S rRNA methyltransferase B [Shigella sp. D9] gi|260846086|ref|YP_003223864.1| 16S rRNA m5C967 methyltransferase, S-adenosyl-L-methionine-dependent [Escherichia coli O103:H2 str. 12009] gi|293453607|ref|ZP_06664026.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli B088] gi|300815501|ref|ZP_07095726.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli MS 107-1] gi|300822908|ref|ZP_07103044.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli MS 119-7] gi|300918263|ref|ZP_07134867.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli MS 115-1] gi|300921903|ref|ZP_07138058.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli MS 182-1] gi|301325146|ref|ZP_07218678.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli MS 78-1] gi|307315133|ref|ZP_07594716.1| sun protein [Escherichia coli W] gi|309794564|ref|ZP_07688986.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli MS 145-7] gi|331670118|ref|ZP_08370957.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli TA271] gi|331679357|ref|ZP_08380027.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli H591] gi|332281843|ref|ZP_08394256.1| 16S rRNA m5C967 methyltransferase S-adenosyl-L-methionine-dependent [Shigella sp. D9] gi|224493245|sp|A7ZSH7|RSMB_ECO24 RecName: Full=Ribosomal RNA small subunit methyltransferase B; AltName: Full=16S rRNA m5C967 methyltransferase; AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase rsmB gi|254766855|sp|B7LHZ0|RSMB_ECO55 RecName: Full=Ribosomal RNA small subunit methyltransferase B; AltName: Full=16S rRNA m5C967 methyltransferase; AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase rsmB gi|254766858|sp|B7M0Z4|RSMB_ECO8A RecName: Full=Ribosomal RNA small subunit methyltransferase B; AltName: Full=16S rRNA m5C967 methyltransferase; AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase rsmB gi|254766860|sp|B6I202|RSMB_ECOSE RecName: Full=Ribosomal RNA small subunit methyltransferase B; AltName: Full=16S rRNA m5C967 methyltransferase; AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase rsmB gi|157079669|gb|ABV19377.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli E24377A] gi|192925853|gb|EDV80503.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli E22] gi|192955147|gb|EDV85641.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli E110019] gi|194411665|gb|EDX27992.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli B171] gi|209914013|dbj|BAG79087.1| putative rRNA methylase [Escherichia coli SE11] gi|218353713|emb|CAU99984.1| 16S rRNA m5C967 methyltransferase, S-adenosyl-L-methionine-dependent [Escherichia coli 55989] gi|218362614|emb|CAR00240.1| 16S rRNA m5C967 methyltransferase, S-adenosyl-L-methionine-dependent [Escherichia coli IAI1] gi|257761233|dbj|BAI32730.1| 16S rRNA m5C967 methyltransferase, S-adenosyl-L-methionine-dependent [Escherichia coli O103:H2 str. 12009] gi|291321733|gb|EFE61164.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli B088] gi|300414524|gb|EFJ97834.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli MS 115-1] gi|300421704|gb|EFK05015.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli MS 182-1] gi|300524674|gb|EFK45743.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli MS 119-7] gi|300532393|gb|EFK53455.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli MS 107-1] gi|300847978|gb|EFK75738.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli MS 78-1] gi|306905482|gb|EFN36017.1| sun protein [Escherichia coli W] gi|308121614|gb|EFO58876.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli MS 145-7] gi|315062580|gb|ADT76907.1| 16S rRNA m5C967 methyltransferase, S-adenosyl-L-methionine-dependent [Escherichia coli W] gi|323162967|gb|EFZ48802.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli E128010] gi|323182767|gb|EFZ68168.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli 1357] gi|323376833|gb|ADX49101.1| sun protein [Escherichia coli KO11] gi|323944291|gb|EGB40367.1| ribosomal RNA small methyltransferase B [Escherichia coli H120] gi|324017855|gb|EGB87074.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli MS 117-3] gi|324116322|gb|EGC10242.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli E1167] gi|331062180|gb|EGI34100.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli TA271] gi|331072529|gb|EGI43854.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli H591] gi|332104195|gb|EGJ07541.1| 16S rRNA m5C967 methyltransferase S-adenosyl-L-methionine-dependent [Shigella sp. D9] Length = 429 Score = 46.6 bits (110), Expect = 0.001, Method: Composition-based stats. Identities = 20/130 (15%), Positives = 49/130 (37%), Gaps = 3/130 (2%) Query: 29 QIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLIS 88 Q ++ + + E + ++ ++ D + + GV+ +D LI+ Sbjct: 4 QRNLRSMAAQAVEQVVEQGQSLSNILPPLQQKVSDKDKALLQELCFGVLRTLSQLDWLIN 63 Query: 89 SCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINA 148 + + + + ++ G+ +L+ +P ++E V A IN Sbjct: 64 KLMARPMTGKQ--RTVHYLIMVGLYQLLYTR-IPPHAALAETVEGAIAIKRPQLKGLING 120 Query: 149 VLDKVSRKEE 158 VL + R++E Sbjct: 121 VLRQFQRQQE 130 >gi|16131168|ref|NP_417747.1| 16S rRNA m(5)C967 methyltransferase, S-adenosyl-L-methionine-dependent [Escherichia coli str. K-12 substr. MG1655] gi|89110722|ref|AP_004502.1| 16S rRNA m5C967 methyltransferase, S-adenosyl-L-methionine-dependent [Escherichia coli str. K-12 substr. W3110] gi|157162762|ref|YP_001460080.1| 16S rRNA methyltransferase B [Escherichia coli HS] gi|170018476|ref|YP_001723430.1| 16S rRNA methyltransferase B [Escherichia coli ATCC 8739] gi|170082809|ref|YP_001732129.1| 16S rRNA m5C967 methyltransferase, S-adenosyl-L-methionine-dependent [Escherichia coli str. K-12 substr. DH10B] gi|188493203|ref|ZP_03000473.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli 53638] gi|194439994|ref|ZP_03072052.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli 101-1] gi|238902379|ref|YP_002928175.1| 16S rRNA m5C967 methyltransferase, S-adenosyl-L-methionine-dependent [Escherichia coli BW2952] gi|253771888|ref|YP_003034719.1| 16S rRNA methyltransferase B [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|254038449|ref|ZP_04872505.1| ribosomal RNA small subunit methyltransferase B [Escherichia sp. 1_1_43] gi|254163216|ref|YP_003046324.1| 16S rRNA methyltransferase B [Escherichia coli B str. REL606] gi|256025984|ref|ZP_05439849.1| 16S rRNA methyltransferase B [Escherichia sp. 4_1_40B] gi|300932181|ref|ZP_07147461.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli MS 187-1] gi|300946510|ref|ZP_07160776.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli MS 116-1] gi|300955326|ref|ZP_07167708.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli MS 175-1] gi|301021178|ref|ZP_07185214.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli MS 196-1] gi|301643892|ref|ZP_07243922.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli MS 146-1] gi|307139971|ref|ZP_07499327.1| 16S rRNA methyltransferase B [Escherichia coli H736] gi|312972450|ref|ZP_07786624.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli 1827-70] gi|331643984|ref|ZP_08345113.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli H736] gi|1169715|sp|P36929|RSMB_ECOLI RecName: Full=Ribosomal RNA small subunit methyltransferase B; AltName: Full=16S rRNA m5C967 methyltransferase; AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase rsmB gi|224493247|sp|B1X6E1|RSMB_ECODH RecName: Full=Ribosomal RNA small subunit methyltransferase B; AltName: Full=16S rRNA m5C967 methyltransferase; AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase rsmB gi|224493248|sp|A8A593|RSMB_ECOHS RecName: Full=Ribosomal RNA small subunit methyltransferase B; AltName: Full=16S rRNA m5C967 methyltransferase; AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase rsmB gi|224493250|sp|B1IQ11|RSMB_ECOLC RecName: Full=Ribosomal RNA small subunit methyltransferase B; AltName: Full=16S rRNA m5C967 methyltransferase; AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase rsmB gi|259495485|sp|C4ZUE3|RSMB_ECOBW RecName: Full=Ribosomal RNA small subunit methyltransferase B; AltName: Full=16S rRNA m5C967 methyltransferase; AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase rsmB gi|49259108|pdb|1SQF|A Chain A, The Crystal Structure Of E. Coli Fmu Binary Complex With S- Adenosylmethionine At 2.1 A Resolution gi|49259109|pdb|1SQG|A Chain A, The Crystal Structure Of The E. Coli Fmu Apoenzyme At 1.65 A Resolution gi|1772512|emb|CAA71359.1| sun [Escherichia coli str. K-12 substr. MG1655] gi|2367212|gb|AAC76314.1| 16S rRNA m(5)C967 methyltransferase, S-adenosyl-L-methionine-dependent [Escherichia coli str. K-12 substr. MG1655] gi|85676753|dbj|BAE78003.1| 16S rRNA m5C967 methyltransferase, S-adenosyl-L-methionine-dependent [Escherichia coli str. K12 substr. W3110] gi|157068442|gb|ABV07697.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli HS] gi|169753404|gb|ACA76103.1| sun protein [Escherichia coli ATCC 8739] gi|169890644|gb|ACB04351.1| 16S rRNA m5C967 methyltransferase, S-adenosyl-L-methionine-dependent [Escherichia coli str. K-12 substr. DH10B] gi|188488402|gb|EDU63505.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli 53638] gi|194421046|gb|EDX37075.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli 101-1] gi|226838955|gb|EEH70978.1| ribosomal RNA small subunit methyltransferase B [Escherichia sp. 1_1_43] gi|238859734|gb|ACR61732.1| 16S rRNA m5C967 methyltransferase, S-adenosyl-L-methionine-dependent [Escherichia coli BW2952] gi|242378815|emb|CAQ33607.1| 16S rRNA m[5]C967 methyltransferase [Escherichia coli BL21(DE3)] gi|253322932|gb|ACT27534.1| sun protein [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|253975117|gb|ACT40788.1| 16S rRNA m5C967 methyltransferase, S-adenosyl-L-methionine-dependent [Escherichia coli B str. REL606] gi|253979273|gb|ACT44943.1| 16S rRNA m5C967 methyltransferase, S-adenosyl-L-methionine-dependent [Escherichia coli BL21(DE3)] gi|260447693|gb|ACX38115.1| sun protein [Escherichia coli DH1] gi|299881625|gb|EFI89836.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli MS 196-1] gi|300317770|gb|EFJ67554.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli MS 175-1] gi|300453816|gb|EFK17436.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli MS 116-1] gi|300460065|gb|EFK23558.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli MS 187-1] gi|301077735|gb|EFK92541.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli MS 146-1] gi|309703700|emb|CBJ03041.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli ETEC H10407] gi|310334827|gb|EFQ01032.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli 1827-70] gi|315137864|dbj|BAJ45023.1| 16S rRNA methyltransferase B [Escherichia coli DH1] gi|323934513|gb|EGB30921.1| ribosomal RNA small methyltransferase B [Escherichia coli E1520] gi|323939290|gb|EGB35502.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli E482] gi|323959561|gb|EGB55214.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli H489] gi|323970092|gb|EGB65366.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli TA007] gi|331036278|gb|EGI08504.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli H736] gi|332345236|gb|AEE58570.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli UMNK88] Length = 429 Score = 46.6 bits (110), Expect = 0.001, Method: Composition-based stats. Identities = 20/130 (15%), Positives = 49/130 (37%), Gaps = 3/130 (2%) Query: 29 QIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLIS 88 Q ++ + + E + ++ ++ D + + GV+ +D LI+ Sbjct: 4 QRNLRSMAAQAVEQVVEQGQSLSNILPPLQQKVSDKDKALLQELCFGVLRTLSQLDWLIN 63 Query: 89 SCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINA 148 + + + + ++ G+ +L+ +P ++E V A IN Sbjct: 64 KLMARPMTGKQ--RTVHYLIMVGLYQLLYTR-IPPHAALAETVEGAIAIKRPQLKGLING 120 Query: 149 VLDKVSRKEE 158 VL + R++E Sbjct: 121 VLRQFQRQQE 130 >gi|304388913|ref|ZP_07370960.1| ribosomal RNA small subunit methyltransferase B [Neisseria meningitidis ATCC 13091] gi|304337047|gb|EFM03234.1| ribosomal RNA small subunit methyltransferase B [Neisseria meningitidis ATCC 13091] gi|325203231|gb|ADY98684.1| ribosomal RNA small subunit methyltransferase B [Neisseria meningitidis M01-240355] Length = 419 Score = 46.6 bits (110), Expect = 0.001, Method: Composition-based stats. Identities = 25/126 (19%), Positives = 50/126 (39%), Gaps = 17/126 (13%) Query: 34 GCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTE 93 G + +++++ T A +L + D+ + G + +++ L + Sbjct: 20 GRNLQDVLAQIRT----AHPDLTAQENGALQDIAY------GCQRYLGSLKHMLAQMLKK 69 Query: 94 KWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVC-IAHDFFYGDEPKFINAVLDK 152 + L S+L A + +L + P V+ +E V IA G F NAVL + Sbjct: 70 --PID--NPQLESLLLAALYQLHYTRNAPHAVV-NEAVESIAKI-GRGQYRSFANAVLRR 123 Query: 153 VSRKEE 158 R+ + Sbjct: 124 FLRERD 129 >gi|293412707|ref|ZP_06655375.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli B354] gi|301018854|ref|ZP_07183093.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli MS 69-1] gi|291468354|gb|EFF10847.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli B354] gi|300399511|gb|EFJ83049.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli MS 69-1] Length = 429 Score = 46.6 bits (110), Expect = 0.001, Method: Composition-based stats. Identities = 20/130 (15%), Positives = 49/130 (37%), Gaps = 3/130 (2%) Query: 29 QIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLIS 88 Q ++ + + E + ++ ++ D + + GV+ +D LI+ Sbjct: 4 QRNLRSMAAQAVEQVVEQGQSLSNILPPLQQKVSDKDKALLQELCFGVLRTLSQLDWLIN 63 Query: 89 SCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINA 148 + + + + ++ G+ +L+ +P ++E V A IN Sbjct: 64 KLMARPMTGKQ--RTVHYLIMVGLYQLLYTR-IPPHAALAETVEGAIAIKRPQLKGLING 120 Query: 149 VLDKVSRKEE 158 VL + R++E Sbjct: 121 VLRQFQRQQE 130 >gi|325145434|gb|EGC67710.1| ribosomal RNA small subunit methyltransferase B [Neisseria meningitidis M01-240013] Length = 419 Score = 46.6 bits (110), Expect = 0.001, Method: Composition-based stats. Identities = 25/126 (19%), Positives = 50/126 (39%), Gaps = 17/126 (13%) Query: 34 GCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTE 93 G + +++++ T A +L + D+ + G + +++ L + Sbjct: 20 GRNLQDVLAQIRT----AHPDLTAQENGALQDIAY------GCQRYLGSLKHMLAQMLKK 69 Query: 94 KWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVC-IAHDFFYGDEPKFINAVLDK 152 + L S+L A + +L + P V+ +E V IA G F NAVL + Sbjct: 70 --PID--NPQLESLLLAALYQLHYTRNAPHAVV-NEAVESIAKI-GRGQYRSFANAVLRR 123 Query: 153 VSRKEE 158 R+ + Sbjct: 124 FLRERD 129 >gi|320199476|gb|EFW74066.1| Ribosomal RNA small subunit methyltransferase B [Escherichia coli EC4100B] Length = 429 Score = 46.6 bits (110), Expect = 0.001, Method: Composition-based stats. Identities = 20/130 (15%), Positives = 49/130 (37%), Gaps = 3/130 (2%) Query: 29 QIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLIS 88 Q ++ + + E + ++ ++ D + + GV+ +D LI+ Sbjct: 4 QRNLRSMAAQAVEQVVEQGQSLSNILPPLQQKVSDKDKALLQELCFGVLRTLSQLDWLIN 63 Query: 89 SCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINA 148 + + + + ++ G+ +L+ +P ++E V A IN Sbjct: 64 KLMARPMTGKQ--RTVHYLIMVGLYQLLYTR-IPPHAALAETVEGAIAIKRPQLKGLING 120 Query: 149 VLDKVSRKEE 158 VL + R++E Sbjct: 121 VLRQFQRQQE 130 >gi|331674796|ref|ZP_08375553.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli TA280] gi|331067705|gb|EGI39103.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli TA280] Length = 429 Score = 46.6 bits (110), Expect = 0.001, Method: Composition-based stats. Identities = 20/130 (15%), Positives = 49/130 (37%), Gaps = 3/130 (2%) Query: 29 QIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLIS 88 Q ++ + + E + ++ ++ D + + GV+ +D LI+ Sbjct: 4 QRNLRSMAAQAVEQVVEQGQSLSNILPPLQQKVSDKDKALLQELCFGVLRTLSQLDWLIN 63 Query: 89 SCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINA 148 + + + + ++ G+ +L+ +P ++E V A IN Sbjct: 64 KLMARPMTGKQ--RTVHYLIMVGLYQLLYTR-IPPHAALAETVEGAIAIKRPQLKGLING 120 Query: 149 VLDKVSRKEE 158 VL + R++E Sbjct: 121 VLRQFQRQQE 130 >gi|331659579|ref|ZP_08360517.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli TA206] gi|331052794|gb|EGI24827.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli TA206] Length = 429 Score = 46.6 bits (110), Expect = 0.001, Method: Composition-based stats. Identities = 25/147 (17%), Positives = 56/147 (38%), Gaps = 17/147 (11%) Query: 12 LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71 + +R + R A QA+ Q+ G S + I+ ++ D + Sbjct: 1 MKKQRNL-RSMAAQAIEQVVEQGQSLSNIL-------------PPLQQKISDKDKALLQE 46 Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131 + GV+ +D LI+ + + + + ++ G+ +L+ +P ++E V Sbjct: 47 LCFGVLRTLSQLDWLINKLMARPMTGKQ--RTVHYLIMVGLYQLLYTR-IPPHAALAETV 103 Query: 132 CIAHDFFYGDEPKFINAVLDKVSRKEE 158 A IN +L + R+++ Sbjct: 104 EGAVAIKRPQLKGLINGILRQFQRQQD 130 >gi|148261637|ref|YP_001235764.1| Fmu (Sun) domain-containing protein [Acidiphilium cryptum JF-5] gi|146403318|gb|ABQ31845.1| Fmu (Sun) domain protein [Acidiphilium cryptum JF-5] Length = 415 Score = 46.6 bits (110), Expect = 0.001, Method: Composition-based stats. Identities = 22/79 (27%), Positives = 31/79 (39%), Gaps = 6/79 (7%) Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135 V+ R +D ++ L + ILR G +L P +S V +AH Sbjct: 52 VLRRLGSLDAILEPHLRRAPP----APV-RHILRIGAAQL-ALLGAPAHAAVSTAVGLAH 105 Query: 136 DFFYGDEPKFINAVLDKVS 154 G +NAVL KVS Sbjct: 106 ARGLGKFAGLVNAVLRKVS 124 >gi|309378544|emb|CBX22816.1| unnamed protein product [Neisseria lactamica Y92-1009] Length = 419 Score = 46.6 bits (110), Expect = 0.001, Method: Composition-based stats. Identities = 24/119 (20%), Positives = 45/119 (37%), Gaps = 13/119 (10%) Query: 41 ISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRL 100 + + + A +L + D+ + G + +++ L + Sbjct: 23 LQDVLVHIRAAHPDLTAQENGALQDIAY------GCQRYLGSLKHMLAQMLKK--PID-- 72 Query: 101 DMILCSILRAGVLELIECHSVPVEVIISEYVC-IAHDFFYGDEPKFINAVLDKVSRKEE 158 + L S+L A + +L + P V+ +E V IA G F NAVL + R+ E Sbjct: 73 NPQLESLLLAALYQLHYTRNAPHAVV-NEAVESIAKI-GRGQYRSFANAVLRRFLRERE 129 >gi|306832887|ref|ZP_07466020.1| ribosomal RNA small subunit methyltransferase B [Streptococcus bovis ATCC 700338] gi|304424962|gb|EFM28095.1| ribosomal RNA small subunit methyltransferase B [Streptococcus bovis ATCC 700338] Length = 440 Score = 46.6 bits (110), Expect = 0.001, Method: Composition-based stats. Identities = 28/143 (19%), Positives = 59/143 (41%), Gaps = 15/143 (10%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 + AR A+ L E + E Y A + + D I++G Sbjct: 6 KNQARGLALLVL-----------ENVFEDGAYSNIALNQELSHTTLSPKDKPLVTEIVYG 54 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135 + RK ++ ++ + ++ +LD + +L + +L+ +P ++++ V IA Sbjct: 55 TVARKITLEWYLAHYIKDR---DKLDFWVYYLLMLSLYQLLYLDKIPAHAVVNDAVNIAK 111 Query: 136 DFFYGDEP-KFINAVLDKVSRKE 157 + KF+NAVL + + +E Sbjct: 112 NRGNKKGAEKFVNAVLRRFTEEE 134 >gi|326405127|ref|YP_004285209.1| RNA methyltransferase [Acidiphilium multivorum AIU301] gi|325051989|dbj|BAJ82327.1| RNA methyltransferase [Acidiphilium multivorum AIU301] Length = 418 Score = 46.6 bits (110), Expect = 0.001, Method: Composition-based stats. Identities = 22/79 (27%), Positives = 31/79 (39%), Gaps = 6/79 (7%) Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135 V+ R +D ++ L + ILR G +L P +S V +AH Sbjct: 55 VLRRLGSLDAILEPHLRRAPP----APV-RHILRIGAAQL-ALLGAPAHAAVSTAVGLAH 108 Query: 136 DFFYGDEPKFINAVLDKVS 154 G +NAVL KVS Sbjct: 109 ARGLGKFAGLVNAVLRKVS 127 >gi|154243996|ref|YP_001414954.1| sun protein [Xanthobacter autotrophicus Py2] gi|154158081|gb|ABS65297.1| sun protein [Xanthobacter autotrophicus Py2] Length = 471 Score = 46.6 bits (110), Expect = 0.001, Method: Composition-based stats. Identities = 27/147 (18%), Positives = 52/147 (35%), Gaps = 26/147 (17%) Query: 18 IARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVM 77 AR+ AV L + + + LD + D I+ + Sbjct: 46 AARILAVDGL--------------EQVLRHGAALEDALDADVALDPRDRALAYRILATSL 91 Query: 78 DRKQHIDLLISSCLTEKWSFS--RLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135 R + LI+ + S RL+ +L + G +++ VP + V +A Sbjct: 92 RRIGTLRALIAKLMERGLPKSAPRLESVLLA----GATQILFM-DVPNHAAVGLCVDVAR 146 Query: 136 DFFYGDEPKF---INAVLDKVSRKEEI 159 + F +NAVL +++R+ + Sbjct: 147 A--DRNTAGFAGLVNAVLRRLTREADA 171 >gi|170684100|ref|YP_001745551.1| 16S rRNA methyltransferase B [Escherichia coli SMS-3-5] gi|224493251|sp|B1LGP5|RSMB_ECOSM RecName: Full=Ribosomal RNA small subunit methyltransferase B; AltName: Full=16S rRNA m5C967 methyltransferase; AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase rsmB gi|170521818|gb|ACB19996.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli SMS-3-5] Length = 429 Score = 46.6 bits (110), Expect = 0.001, Method: Composition-based stats. Identities = 20/130 (15%), Positives = 49/130 (37%), Gaps = 3/130 (2%) Query: 29 QIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLIS 88 Q ++ + + E + ++ ++ D + + GV+ +D LI+ Sbjct: 4 QRNLRSMAAQAVEQVVEQGQSLSNILPPLQQKVSDKDKALLQELCFGVLRTLSQLDWLIN 63 Query: 89 SCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINA 148 + + + + ++ G+ +L+ +P ++E V A IN Sbjct: 64 KLMARPMTGKQ--RTVHYLIMVGLYQLLYTR-IPPHAALAETVEGAIAIKRPQLKGLING 120 Query: 149 VLDKVSRKEE 158 VL + R++E Sbjct: 121 VLRQFQRQQE 130 >gi|606223|gb|AAA58086.1| we have one ORF, ECFMT has fmu and fmv [Escherichia coli str. K-12 substr. MG1655] Length = 386 Score = 46.6 bits (110), Expect = 0.001, Method: Composition-based stats. Identities = 20/130 (15%), Positives = 49/130 (37%), Gaps = 3/130 (2%) Query: 29 QIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLIS 88 Q ++ + + E + ++ ++ D + + GV+ +D LI+ Sbjct: 4 QRNLRSMAAQAVEQVVEQGQSLSNILPPLQQKVSDKDKALLQELCFGVLRTLSQLDWLIN 63 Query: 89 SCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINA 148 + + + + ++ G+ +L+ +P ++E V A IN Sbjct: 64 KLMARPMTGKQ--RTVHYLIMVGLYQLLYTR-IPPHAALAETVEGAIAIKRPQLKGLING 120 Query: 149 VLDKVSRKEE 158 VL + R++E Sbjct: 121 VLRQFQRQQE 130 >gi|194435072|ref|ZP_03067310.1| ribosomal RNA small subunit methyltransferase B [Shigella dysenteriae 1012] gi|194416679|gb|EDX32810.1| ribosomal RNA small subunit methyltransferase B [Shigella dysenteriae 1012] gi|320182714|gb|EFW57600.1| Ribosomal RNA small subunit methyltransferase B [Shigella boydii ATCC 9905] gi|332086286|gb|EGI91442.1| ribosomal RNA small subunit methyltransferase B [Shigella dysenteriae 155-74] Length = 429 Score = 46.6 bits (110), Expect = 0.001, Method: Composition-based stats. Identities = 20/130 (15%), Positives = 49/130 (37%), Gaps = 3/130 (2%) Query: 29 QIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLIS 88 Q ++ + + E + ++ ++ D + + GV+ +D LI+ Sbjct: 4 QRNLRSMAAQAVEQVVEQGQSLSNILPPLQQKVSDKDKALLQELCFGVLRTLSQLDWLIN 63 Query: 89 SCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINA 148 + + + + ++ G+ +L+ +P ++E V A IN Sbjct: 64 KLMARPMTGKQ--RTVHYLIMVGLYQLLYTR-IPPHAALAETVEGAIAIKRPQLKGLING 120 Query: 149 VLDKVSRKEE 158 VL + R++E Sbjct: 121 VLRQFQRRQE 130 >gi|59802189|ref|YP_208901.1| putative 16S RNA methyltransferase [Neisseria gonorrhoeae FA 1090] gi|59719084|gb|AAW90489.1| putative 16S RNA methyltransferase [Neisseria gonorrhoeae FA 1090] Length = 419 Score = 46.6 bits (110), Expect = 0.001, Method: Composition-based stats. Identities = 24/119 (20%), Positives = 45/119 (37%), Gaps = 13/119 (10%) Query: 41 ISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRL 100 + + + A +L + D+ + G + +++ L + Sbjct: 23 LQDVLAHIRAAHPQLTAQENGALQDIAY------GCQRYLGSLKHMLAQMLKK--PID-- 72 Query: 101 DMILCSILRAGVLELIECHSVPVEVIISEYVC-IAHDFFYGDEPKFINAVLDKVSRKEE 158 + L S+L A + +L + P V+ +E V IA G F NAVL + R+ E Sbjct: 73 NPQLESLLLAALYQLHYTRNAPHAVV-NEAVESIAKI-GRGQYRSFANAVLRRFLRERE 129 >gi|325135221|gb|EGC57846.1| ribosomal RNA small subunit methyltransferase B [Neisseria meningitidis M13399] Length = 419 Score = 46.2 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 23/119 (19%), Positives = 45/119 (37%), Gaps = 13/119 (10%) Query: 41 ISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRL 100 + + + A +L + D+ + G + +++ L + Sbjct: 23 LQDVLAHIRAAHPDLTAQENGALQDIAY------GCQRYLGSLKHMLAQMLKK--PID-- 72 Query: 101 DMILCSILRAGVLELIECHSVPVEVIISEYVC-IAHDFFYGDEPKFINAVLDKVSRKEE 158 + L S+L A + +L + P V+ +E V IA G F NAVL + R+ + Sbjct: 73 NPQLESLLLAALYQLHYTRNAPHAVV-NEAVESIAKI-GRGQYRSFANAVLRRFLRERD 129 >gi|281602657|gb|ADA75641.1| Ribosomal RNA small subunit methyltransferase B [Shigella flexneri 2002017] Length = 436 Score = 46.2 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 20/130 (15%), Positives = 49/130 (37%), Gaps = 3/130 (2%) Query: 29 QIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLIS 88 Q ++ + + E + ++ ++ D + + GV+ +D LI+ Sbjct: 11 QRNLRSMAAQAVEQVVEQGQSLSNILPPLQQKVSDKDKALLQELCFGVLRTLSQLDWLIN 70 Query: 89 SCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINA 148 + + + + ++ G+ +L+ +P ++E V A IN Sbjct: 71 KLMARPMTGKQ--RTVHYLIMVGLYQLLYTR-IPPHAALAETVEGAIAIKRPQLKGLING 127 Query: 149 VLDKVSRKEE 158 VL + R++E Sbjct: 128 VLRQFQRRQE 137 >gi|110807136|ref|YP_690656.1| 16S rRNA methyltransferase B [Shigella flexneri 5 str. 8401] gi|110616684|gb|ABF05351.1| conserved hypothetical protein [Shigella flexneri 5 str. 8401] Length = 436 Score = 46.2 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 20/130 (15%), Positives = 49/130 (37%), Gaps = 3/130 (2%) Query: 29 QIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLIS 88 Q ++ + + E + ++ ++ D + + GV+ +D LI+ Sbjct: 11 QRNLRSMAAQAVEQVVEQGQSLSNILPPLQQKVSDKDKALLQELCFGVLRTLSQLDWLIN 70 Query: 89 SCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINA 148 + + + + ++ G+ +L+ +P ++E V A IN Sbjct: 71 KLMARPMTGKQ--RTVHYLIMVGLYQLLYTR-IPPHAALAETVEGAIAIKRPQLKGLING 127 Query: 149 VLDKVSRKEE 158 VL + R++E Sbjct: 128 VLRQFQRRQE 137 >gi|240081718|ref|ZP_04726261.1| putative 16S RNA methyltransferase [Neisseria gonorrhoeae FA19] gi|268597816|ref|ZP_06131983.1| 16S RNA methyltransferase [Neisseria gonorrhoeae FA19] gi|268683121|ref|ZP_06149983.1| 16S RNA methyltransferase [Neisseria gonorrhoeae PID332] gi|268551604|gb|EEZ46623.1| 16S RNA methyltransferase [Neisseria gonorrhoeae FA19] gi|268623405|gb|EEZ55805.1| 16S RNA methyltransferase [Neisseria gonorrhoeae PID332] gi|317165348|gb|ADV08889.1| putative 16S RNA methyltransferase [Neisseria gonorrhoeae TCDC-NG08107] Length = 419 Score = 46.2 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 24/119 (20%), Positives = 45/119 (37%), Gaps = 13/119 (10%) Query: 41 ISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRL 100 + + + A +L + D+ + G + +++ L + Sbjct: 23 LQDVLAHIRAAHPQLTAQENGALQDIAY------GCQRYLGSLKHMLAQMLKK--PID-- 72 Query: 101 DMILCSILRAGVLELIECHSVPVEVIISEYVC-IAHDFFYGDEPKFINAVLDKVSRKEE 158 + L S+L A + +L + P V+ +E V IA G F NAVL + R+ E Sbjct: 73 NPQLESLLLAALYQLHYTRNAPHAVV-NEAVESIAKI-GRGQYRSFANAVLRRFLRERE 129 >gi|224493306|sp|Q0T014|RSMB_SHIF8 RecName: Full=Ribosomal RNA small subunit methyltransferase B; AltName: Full=16S rRNA m5C967 methyltransferase; AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase rsmB Length = 429 Score = 46.2 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 20/130 (15%), Positives = 49/130 (37%), Gaps = 3/130 (2%) Query: 29 QIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLIS 88 Q ++ + + E + ++ ++ D + + GV+ +D LI+ Sbjct: 4 QRNLRSMAAQAVEQVVEQGQSLSNILPPLQQKVSDKDKALLQELCFGVLRTLSQLDWLIN 63 Query: 89 SCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINA 148 + + + + ++ G+ +L+ +P ++E V A IN Sbjct: 64 KLMARPMTGKQ--RTVHYLIMVGLYQLLYTR-IPPHAALAETVEGAIAIKRPQLKGLING 120 Query: 149 VLDKVSRKEE 158 VL + R++E Sbjct: 121 VLRQFQRRQE 130 >gi|171778151|ref|ZP_02919408.1| hypothetical protein STRINF_00244 [Streptococcus infantarius subsp. infantarius ATCC BAA-102] gi|171283133|gb|EDT48557.1| hypothetical protein STRINF_00244 [Streptococcus infantarius subsp. infantarius ATCC BAA-102] Length = 440 Score = 46.2 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 27/143 (18%), Positives = 61/143 (42%), Gaps = 15/143 (10%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 + AR A+ L E + E Y A + ++ D I++G Sbjct: 6 KKQARGLALVVL-----------ENVFEEGAYSNIALNQELKQTQLSQKDKSLVTEIVYG 54 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135 + RK ++ ++ + ++ +LD + +L + +L+ +P ++++ V IA Sbjct: 55 TVARKITLEWYLAHYIEDR---DKLDPWVYYLLMLSLYQLLYLDKMPAHAVVNDAVNIAK 111 Query: 136 DFFYGDEP-KFINAVLDKVSRKE 157 + KF+NAVL ++++ + Sbjct: 112 NRGNKKGAEKFVNAVLRRLTKDD 134 >gi|30064610|ref|NP_838781.1| 16S rRNA methyltransferase B [Shigella flexneri 2a str. 2457T] gi|56480310|ref|NP_709076.2| 16S rRNA methyltransferase B [Shigella flexneri 2a str. 301] gi|46396790|sp|Q7UBD3|RSMB_SHIFL RecName: Full=Ribosomal RNA small subunit methyltransferase B; AltName: Full=16S rRNA m5C967 methyltransferase; AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase rsmB gi|30042869|gb|AAP18592.1| hypothetical protein S3545 [Shigella flexneri 2a str. 2457T] gi|56383861|gb|AAN44783.2| orf, conserved hypothetical protein [Shigella flexneri 2a str. 301] gi|313648789|gb|EFS13229.1| ribosomal RNA small subunit methyltransferase B [Shigella flexneri 2a str. 2457T] gi|332749603|gb|EGJ80020.1| ribosomal RNA small subunit methyltransferase B [Shigella flexneri K-671] gi|332749746|gb|EGJ80161.1| ribosomal RNA small subunit methyltransferase B [Shigella flexneri 4343-70] gi|332766528|gb|EGJ96735.1| ribosomal RNA small subunit methyltransferase B [Shigella flexneri 2930-71] gi|332998314|gb|EGK17914.1| ribosomal RNA small subunit methyltransferase B [Shigella flexneri K-218] gi|333012367|gb|EGK31748.1| ribosomal RNA small subunit methyltransferase B [Shigella flexneri K-304] Length = 429 Score = 46.2 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 20/130 (15%), Positives = 49/130 (37%), Gaps = 3/130 (2%) Query: 29 QIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLIS 88 Q ++ + + E + ++ ++ D + + GV+ +D LI+ Sbjct: 4 QRNLRSMAAQAVEQVVEQGQSLSNILPPLQQKVSDKDKALLQELCFGVLRTLSQLDWLIN 63 Query: 89 SCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINA 148 + + + + ++ G+ +L+ +P ++E V A IN Sbjct: 64 KLMARPMTGKQ--RTVHYLIMVGLYQLLYTR-IPPHAALAETVEGAIAIKRPQLKGLING 120 Query: 149 VLDKVSRKEE 158 VL + R++E Sbjct: 121 VLRQFQRRQE 130 >gi|254494751|ref|ZP_05107922.1| 16S RNA methyltransferase [Neisseria gonorrhoeae 1291] gi|226513791|gb|EEH63136.1| 16S RNA methyltransferase [Neisseria gonorrhoeae 1291] Length = 419 Score = 46.2 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 24/119 (20%), Positives = 45/119 (37%), Gaps = 13/119 (10%) Query: 41 ISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRL 100 + + + A +L + D+ + G + +++ L + Sbjct: 23 LQDVLAHIRAAHPQLTAQENGALQDIAY------GCQRYLGSLKHMLAQMLKK--PID-- 72 Query: 101 DMILCSILRAGVLELIECHSVPVEVIISEYVC-IAHDFFYGDEPKFINAVLDKVSRKEE 158 + L S+L A + +L + P V+ +E V IA G F NAVL + R+ E Sbjct: 73 NPQLESLLLAALYQLHYTRNAPHAVV-NEAVESIAKI-GRGQYRSFANAVLRRFLRERE 129 >gi|332996759|gb|EGK16384.1| ribosomal RNA small subunit methyltransferase B [Shigella flexneri K-272] Length = 429 Score = 46.2 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 20/130 (15%), Positives = 49/130 (37%), Gaps = 3/130 (2%) Query: 29 QIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLIS 88 Q ++ + + E + ++ ++ D + + GV+ +D LI+ Sbjct: 4 QRNLRSMAAHAVEQVVEQGQSLSNILPPLQQKVSDKDKALLQELCFGVLRTLSQLDWLIN 63 Query: 89 SCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINA 148 + + + + ++ G+ +L+ +P ++E V A IN Sbjct: 64 KLMARPMTGKQ--RTVHYLIMVGLYQLLYTR-IPPHAALAETVEGAIAIKRPQLKGLING 120 Query: 149 VLDKVSRKEE 158 VL + R++E Sbjct: 121 VLRQFQRRQE 130 >gi|240124490|ref|ZP_04737446.1| putative 16S RNA methyltransferase [Neisseria gonorrhoeae PID332] Length = 417 Score = 46.2 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 24/119 (20%), Positives = 45/119 (37%), Gaps = 13/119 (10%) Query: 41 ISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRL 100 + + + A +L + D+ + G + +++ L + Sbjct: 21 LQDVLAHIRAAHPQLTAQENGALQDIAY------GCQRYLGSLKHMLAQMLKK--PID-- 70 Query: 101 DMILCSILRAGVLELIECHSVPVEVIISEYVC-IAHDFFYGDEPKFINAVLDKVSRKEE 158 + L S+L A + +L + P V+ +E V IA G F NAVL + R+ E Sbjct: 71 NPQLESLLLAALYQLHYTRNAPHAVV-NEAVESIAKI-GRGQYRSFANAVLRRFLRERE 127 >gi|239997893|ref|ZP_04717817.1| putative 16S RNA methyltransferase [Neisseria gonorrhoeae 35/02] gi|268593745|ref|ZP_06127912.1| 16S RNA methyltransferase [Neisseria gonorrhoeae 35/02] gi|268683215|ref|ZP_06150077.1| 16S RNA methyltransferase [Neisseria gonorrhoeae SK-92-679] gi|268547134|gb|EEZ42552.1| 16S RNA methyltransferase [Neisseria gonorrhoeae 35/02] gi|268623499|gb|EEZ55899.1| 16S RNA methyltransferase [Neisseria gonorrhoeae SK-92-679] Length = 419 Score = 46.2 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 24/119 (20%), Positives = 45/119 (37%), Gaps = 13/119 (10%) Query: 41 ISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRL 100 + + + A +L + D+ + G + +++ L + Sbjct: 23 LQDVLAHIRAAHPQLTAQENGALQDIAY------GCQRYLGSLKHMLAQMLKK--PID-- 72 Query: 101 DMILCSILRAGVLELIECHSVPVEVIISEYVC-IAHDFFYGDEPKFINAVLDKVSRKEE 158 + L S+L A + +L + P V+ +E V IA G F NAVL + R+ E Sbjct: 73 NPQLESLLLAALYQLHYTRNAPHAVV-NEAVESIAKI-GRGQYRSFANAVLRRFLRERE 129 >gi|194099888|ref|YP_002003025.1| putative 16S RNA methyltransferase [Neisseria gonorrhoeae NCCP11945] gi|240124641|ref|ZP_04737527.1| putative 16S RNA methyltransferase [Neisseria gonorrhoeae SK-92-679] gi|193935178|gb|ACF31002.1| putative 16S RNA methyltransferase [Neisseria gonorrhoeae NCCP11945] Length = 417 Score = 46.2 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 24/119 (20%), Positives = 45/119 (37%), Gaps = 13/119 (10%) Query: 41 ISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRL 100 + + + A +L + D+ + G + +++ L + Sbjct: 21 LQDVLAHIRAAHPQLTAQENGALQDIAY------GCQRYLGSLKHMLAQMLKK--PID-- 70 Query: 101 DMILCSILRAGVLELIECHSVPVEVIISEYVC-IAHDFFYGDEPKFINAVLDKVSRKEE 158 + L S+L A + +L + P V+ +E V IA G F NAVL + R+ E Sbjct: 71 NPQLESLLLAALYQLHYTRNAPHAVV-NEAVESIAKI-GRGQYRSFANAVLRRFLRERE 127 >gi|118591346|ref|ZP_01548744.1| SUN protein [Stappia aggregata IAM 12614] gi|118436018|gb|EAV42661.1| SUN protein [Stappia aggregata IAM 12614] Length = 458 Score = 46.2 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 22/132 (16%), Positives = 44/132 (33%), Gaps = 16/132 (12%) Query: 37 TTEIISEYETYRFCADTELDVESVY------LHVDLEWFRVIIHGVMDRKQHIDLLISSC 90 +I+ + D ELD S + D R II + + I ++ Sbjct: 31 AADILGNVVHKKRPLDGELDTASGHSGFRALAANDRSLVRAIIGAALRHRGEIAEILDRL 90 Query: 91 LTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPK----FI 146 L + + IL + +++ +P +S V A + + Sbjct: 91 LDRPIP-EKTGRV-LDILHVAIAQMLF-LDIPDRAAVSLAVDHA---GLDRRARPYKGLV 144 Query: 147 NAVLDKVSRKEE 158 N VL ++ R+ + Sbjct: 145 NGVLRRLGRERD 156 >gi|150398383|ref|YP_001328850.1| Fmu (Sun) domain-containing protein [Sinorhizobium medicae WSM419] gi|150029898|gb|ABR62015.1| Fmu (Sun) domain protein [Sinorhizobium medicae WSM419] Length = 470 Score = 46.2 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 26/134 (19%), Positives = 45/134 (33%), Gaps = 14/134 (10%) Query: 35 CSTTEIISEYETYRFCADTELDVESVYL------HVDLEWFRVIIHGVMDRKQHIDLLIS 88 + +I++ + D LD E D R I++ + I I Sbjct: 41 QAAAKILAAVVDRKTPLDGMLDPERGNPVYRELNDADRALVRAILNSALRHLPRIRAAID 100 Query: 89 SCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKF--- 145 S L L +L +++ VP + V A +F Sbjct: 101 SLLQT--PLPEGARALEHVLTVAAAQILY-LDVPDHSAVDLAVEQAQ--SDPRNRRFASL 155 Query: 146 INAVLDKVSRKEEI 159 +NAVL ++SR++E Sbjct: 156 VNAVLRRLSREKEA 169 >gi|257455153|ref|ZP_05620391.1| ribosomal RNA small subunit methyltransferase B [Enhydrobacter aerosaccus SK60] gi|257447486|gb|EEV22491.1| ribosomal RNA small subunit methyltransferase B [Enhydrobacter aerosaccus SK60] Length = 450 Score = 46.2 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 19/108 (17%), Positives = 34/108 (31%), Gaps = 25/108 (23%) Query: 59 SVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLD-------MILC---SIL 108 + D + ++ G L + W+ +R+ + + L Sbjct: 36 NQVSEKDKGFAHELLLGT--------------LRQWWALARIGESLIEHEVTDKGVWAAL 81 Query: 109 RAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRK 156 G+ +L+ P I E V G INA+L KV + Sbjct: 82 NIGLYQLLYM-DTPDYAAIGETVEAVKQLDKGYGAGLINAILRKVQKN 128 >gi|313837734|gb|EFS75448.1| putative ribosomal RNA small subunit methyltransferase B [Propionibacterium acnes HL037PA2] gi|314927384|gb|EFS91215.1| putative ribosomal RNA small subunit methyltransferase B [Propionibacterium acnes HL044PA1] gi|314972672|gb|EFT16769.1| putative ribosomal RNA small subunit methyltransferase B [Propionibacterium acnes HL037PA3] gi|328907468|gb|EGG27234.1| tRNA/rRNA cytosine-C5-methylase [Propionibacterium sp. P08] Length = 458 Score = 46.2 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 22/146 (15%), Positives = 46/146 (31%), Gaps = 17/146 (11%) Query: 12 LSHRRGIA---RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEW 68 +R A R A AL ++ G +++ + D + Sbjct: 5 PHQKRRKADPARRLAYTALLAVETHGAYANLALADQLR-----------AAKMTGRDAAF 53 Query: 69 FRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIIS 128 ++ G D +I + +L + +LR +++ VP ++ Sbjct: 54 VTELVDGTSRGTGTWDRIIEVASRRNPT--KLQPGVRVMLRMAAHQILAMR-VPTRAAVA 110 Query: 129 EYVCIAHDFFYGDEPKFINAVLDKVS 154 V +A +NAV ++S Sbjct: 111 SSVDLAGQVIGERVTGLVNAVSRRIS 136 >gi|218282589|ref|ZP_03488827.1| hypothetical protein EUBIFOR_01409 [Eubacterium biforme DSM 3989] gi|218216460|gb|EEC89998.1| hypothetical protein EUBIFOR_01409 [Eubacterium biforme DSM 3989] Length = 397 Score = 46.2 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 20/91 (21%), Positives = 33/91 (36%), Gaps = 6/91 (6%) Query: 63 HVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVP 122 D I +G + ++ S + K L+ + +L +L+ VP Sbjct: 32 EKDRALATRIFYGTIQNYRYCKACWSKYVKNK-----LNPKMDVLLTMSTYQLLFLDKVP 86 Query: 123 VEVIISEYVCIAHDFFYGDEPKFINAVLDKV 153 I+++ V IA NAVL KV Sbjct: 87 SYAIVNDAVNIAKKI-NMKYAGLTNAVLHKV 116 >gi|332998302|gb|EGK17903.1| ribosomal RNA small subunit methyltransferase B [Shigella flexneri VA-6] Length = 420 Score = 46.2 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 18/127 (14%), Positives = 50/127 (39%), Gaps = 6/127 (4%) Query: 32 IIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCL 91 + + +++ + ++ ++ ++ D + + GV+ +D LI+ + Sbjct: 1 MAAQAVEQVVEQGQS---LSNILPPLQQKVSDKDKALLQELCFGVLRTLSQLDWLINKLM 57 Query: 92 TEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLD 151 + + + ++ G+ +L+ +P ++E V A IN VL Sbjct: 58 ARPMTGKQ--RTVHYLIMVGLYQLLYTR-IPPHAALAETVEGAIAIKRPQLKGLINGVLR 114 Query: 152 KVSRKEE 158 + R++E Sbjct: 115 QFQRRQE 121 >gi|308388330|gb|ADO30650.1| rsmB 16S RNA methyltransferase [Neisseria meningitidis alpha710] Length = 419 Score = 46.2 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 25/126 (19%), Positives = 50/126 (39%), Gaps = 17/126 (13%) Query: 34 GCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTE 93 G + +++++ T A +L + D+ + G + +++ L + Sbjct: 20 GRNLQDVLAQIRT----AHPDLMAQENGALQDIAY------GCQRYLGSLKHMLAQMLKK 69 Query: 94 KWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVC-IAHDFFYGDEPKFINAVLDK 152 + L S+L A + +L + P V+ +E V IA G F NAVL + Sbjct: 70 --PID--NPQLESLLLAALYQLHYTRNAPHAVV-NEAVESIAKI-GRGQYRSFANAVLRR 123 Query: 153 VSRKEE 158 R+ + Sbjct: 124 FLRERD 129 >gi|332754010|gb|EGJ84383.1| ribosomal RNA small subunit methyltransferase B [Shigella flexneri 2747-71] Length = 420 Score = 46.2 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 18/127 (14%), Positives = 50/127 (39%), Gaps = 6/127 (4%) Query: 32 IIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCL 91 + + +++ + ++ ++ ++ D + + GV+ +D LI+ + Sbjct: 1 MAAQAVEQVVEQGQS---LSNILPPLQQKVSDKDKALLQELCFGVLRTLSQLDWLINKLM 57 Query: 92 TEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLD 151 + + + ++ G+ +L+ +P ++E V A IN VL Sbjct: 58 ARPMTGKQ--RTVHYLIMVGLYQLLYTR-IPPHAALAETVEGAIAIKRPQLKGLINGVLR 114 Query: 152 KVSRKEE 158 + R++E Sbjct: 115 QFQRRQE 121 >gi|325498857|gb|EGC96716.1| 16S rRNA methyltransferase B [Escherichia fergusonii ECD227] Length = 429 Score = 46.2 bits (109), Expect = 0.002, Method: Composition-based stats. Identities = 20/130 (15%), Positives = 49/130 (37%), Gaps = 3/130 (2%) Query: 29 QIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLIS 88 Q ++ + + E + ++ ++ D + + GV+ +D LI+ Sbjct: 4 QRNLRSMAAQAVEQVVEQGQSLSNILPPLQQKVSDKDKALLQELCFGVLRTLSQLDWLIN 63 Query: 89 SCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINA 148 + + + + ++ G+ +L+ +P ++E V A IN Sbjct: 64 KLMARPMTGKQ--RTVHYLIMVGLYQLLYTR-IPPHAALAETVEGAVAIKRPQLKGLING 120 Query: 149 VLDKVSRKEE 158 VL + R++E Sbjct: 121 VLRQFHRQQE 130 >gi|49476251|ref|YP_034292.1| SUN protein (Fmu protein) [Bartonella henselae str. Houston-1] gi|49239059|emb|CAF28362.1| SUN protein (FMU protein) [Bartonella henselae str. Houston-1] Length = 447 Score = 46.2 bits (109), Expect = 0.002, Method: Composition-based stats. Identities = 20/111 (18%), Positives = 34/111 (30%), Gaps = 14/111 (12%) Query: 62 LHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSV 121 D R I+ + + I + L L L +L +++ + Sbjct: 46 SQRDRLLCRAILAAALRHRGQITDALRRFLKRPLPSQALS--LQHLLHISAAQILY-LDI 102 Query: 122 PVEVIISEYVCIAH------DFFYGDEPKFINAVLDKVSRKEEIKRSGCVS 166 P I V +A F G +NA+L V+R+ R Sbjct: 103 PDHAAIDLAVRVAKLDPRMCRFSGG-----VNALLRNVAREAVFLRQKAPH 148 >gi|320655927|gb|EFX23847.1| 16S rRNA methyltransferase B [Escherichia coli O55:H7 str. 3256-97 TW 07815] Length = 429 Score = 46.2 bits (109), Expect = 0.002, Method: Composition-based stats. Identities = 27/147 (18%), Positives = 56/147 (38%), Gaps = 17/147 (11%) Query: 12 LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71 + +R + R A QA+ Q+ G S + I+ ++ D + Sbjct: 1 MKKQRNL-RSMAAQAVEQVVEQGQSLSNIL-------------PPLQQKVSDKDKALLQE 46 Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131 + GV+ +D LI+ + + + + ++ G+ +L+ +P ++E V Sbjct: 47 LCFGVLRTLSQLDWLINKSMARPMTGKQ--RTVHYLIIVGLYQLLYTR-IPPHAALAETV 103 Query: 132 CIAHDFFYGDEPKFINAVLDKVSRKEE 158 A IN VL + R++E Sbjct: 104 EGAIAIKRPQLKGLINGVLRQFQRQQE 130 >gi|331649085|ref|ZP_08350171.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli M605] gi|330909333|gb|EGH37847.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli AA86] gi|331041583|gb|EGI13727.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli M605] Length = 429 Score = 46.2 bits (109), Expect = 0.002, Method: Composition-based stats. Identities = 26/147 (17%), Positives = 56/147 (38%), Gaps = 17/147 (11%) Query: 12 LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71 + +R + R A QA+ Q+ G S + I+ ++ D + Sbjct: 1 MKKQRNL-RSMAAQAVEQVVEQGQSLSNIL-------------PPLQQKVSDKDKALLQE 46 Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131 + GV+ +D LI+ + + + + ++ G+ +L+ +P ++E V Sbjct: 47 LCFGVLRTLSQLDWLINKLMARPMTGKQ--RTVHYLIMVGLYQLLYTR-IPPHAALAETV 103 Query: 132 CIAHDFFYGDEPKFINAVLDKVSRKEE 158 A IN VL + R+++ Sbjct: 104 EGAVAIKRPQLKGLINGVLRQFQRQQD 130 >gi|218702051|ref|YP_002409680.1| 16S rRNA methyltransferase B [Escherichia coli IAI39] gi|300935286|ref|ZP_07150297.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli MS 21-1] gi|254766856|sp|B7NLK8|RSMB_ECO7I RecName: Full=Ribosomal RNA small subunit methyltransferase B; AltName: Full=16S rRNA m5C967 methyltransferase; AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase rsmB gi|218372037|emb|CAR19897.1| 16S rRNA m5C967 methyltransferase, S-adenosyl-L-methionine-dependent [Escherichia coli IAI39] gi|300459489|gb|EFK22982.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli MS 21-1] Length = 429 Score = 46.2 bits (109), Expect = 0.002, Method: Composition-based stats. Identities = 26/147 (17%), Positives = 56/147 (38%), Gaps = 17/147 (11%) Query: 12 LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71 + +R + R A QA+ Q+ G S + I+ ++ D + Sbjct: 1 MKKQRNL-RSMAAQAVEQVVEQGQSLSNIL-------------PPLQQKVSDKDKALLQE 46 Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131 + GV+ +D LI+ + + + + ++ G+ +L+ +P ++E V Sbjct: 47 LCFGVLRTLSQLDWLINKLMARPMTGKQ--RTVHYLIMVGLYQLLYTR-IPPHAALAETV 103 Query: 132 CIAHDFFYGDEPKFINAVLDKVSRKEE 158 A IN VL + R+++ Sbjct: 104 EGAVAIKRPQLKGLINGVLRQFQRQQD 130 >gi|110635746|ref|YP_675954.1| Fmu (Sun) [Mesorhizobium sp. BNC1] gi|110286730|gb|ABG64789.1| Fmu (Sun) [Chelativorans sp. BNC1] Length = 460 Score = 46.2 bits (109), Expect = 0.002, Method: Composition-based stats. Identities = 28/149 (18%), Positives = 46/149 (30%), Gaps = 25/149 (16%) Query: 14 HRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYL--HVDLEWFRV 71 RR A+L A +I D E D R Sbjct: 31 ARRTAAKLLA---------------AVIDARTPLDALTDNEHGHPQYLSLEQRDRALVRA 75 Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131 I+ + + I+ L+ L + L IL G +++ VP + V Sbjct: 76 ILISALRHRCTIEKLVGRRLDRPLPPN--AHSLSHILHVGAAQILF-LDVPDSAAVDLAV 132 Query: 132 CIAHDFFYGDEPKF---INAVLDKVSRKE 157 A +F +NAVL ++R++ Sbjct: 133 TQAKA--DPRAARFSGLVNAVLRNLARRK 159 >gi|121633990|ref|YP_974235.1| SUN-family protein [Neisseria meningitidis FAM18] gi|120865696|emb|CAM09423.1| SUN-family protein [Neisseria meningitidis FAM18] gi|254671147|emb|CBA08200.1| Sun protein [Neisseria meningitidis alpha153] gi|325133179|gb|EGC55850.1| ribosomal RNA small subunit methyltransferase B [Neisseria meningitidis M6190] gi|325138791|gb|EGC61343.1| ribosomal RNA small subunit methyltransferase B [Neisseria meningitidis ES14902] gi|325143273|gb|EGC65611.1| ribosomal RNA small subunit methyltransferase B [Neisseria meningitidis 961-5945] gi|325197401|gb|ADY92857.1| ribosomal RNA small subunit methyltransferase B [Neisseria meningitidis G2136] Length = 419 Score = 46.2 bits (109), Expect = 0.002, Method: Composition-based stats. Identities = 24/126 (19%), Positives = 50/126 (39%), Gaps = 17/126 (13%) Query: 34 GCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTE 93 G + +++++ T A +L + D+ + G + +++ L + Sbjct: 20 GRNLQDVLAQIRT----AHPDLTAQENGALQDIAY------GCQRYLGSLKHMLAQMLKK 69 Query: 94 KWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVC-IAHDFFYGDEPKFINAVLDK 152 + L S+L A + +L + P V+ +E V IA G F NA+L + Sbjct: 70 --PID--NPQLESLLLAALYQLHYTRNAPHAVV-NEAVESIAKI-GRGQYRSFANAILRR 123 Query: 153 VSRKEE 158 R+ + Sbjct: 124 FLRERD 129 >gi|227484654|ref|ZP_03914970.1| possible rRNA SAM-dependent methyltransferase RmsB [Anaerococcus lactolyticus ATCC 51172] gi|227237374|gb|EEI87389.1| possible rRNA SAM-dependent methyltransferase RmsB [Anaerococcus lactolyticus ATCC 51172] Length = 428 Score = 46.2 bits (109), Expect = 0.002, Method: Composition-based stats. Identities = 17/93 (18%), Positives = 35/93 (37%), Gaps = 4/93 (4%) Query: 66 LEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEV 125 L ++GV++ K +ID +I ++ + IL G+ + Sbjct: 35 LSLITKTVYGVLENKIYIDYMIRKLSDV--RLKKIHKHVLLILEIGIYNI-HFLETKDYA 91 Query: 126 IISEYVCIAHDFFYGDEPKFINAVLDKVSRKEE 158 + + V + + F+NA+L R E+ Sbjct: 92 TVDKLVDLTKE-KNKRSTGFVNAILRSFIRDEK 123 >gi|15828640|ref|NP_326000.1| hypothetical protein MYPU_1690 [Mycoplasma pulmonis UAB CTIP] gi|14089582|emb|CAC13342.1| unknown; predicted coding region [Mycoplasma pulmonis] Length = 160 Score = 46.2 bits (109), Expect = 0.002, Method: Composition-based stats. Identities = 25/118 (21%), Positives = 52/118 (44%), Gaps = 18/118 (15%) Query: 48 RFCADTELDVESVYLHVDLEWFR-VIIHGVMDRKQHIDLLISSCLTEK---WSFSRLDMI 103 + +++ LD+ +++ ++ ++ K + LIS L W ++ + Sbjct: 34 WYLSESNLDINDDFVNQAFSLEENKVLKLILKNKTKFENLISKFLKSNSLKW--EQILPL 91 Query: 104 LCSILRAGVLELIEC-----HSVPVEVIISEYVCIAHDF-FYGDEPKFINAVLDKVSR 155 + +I+ L + V+ISE + I+ D + E FINA+LDK+S+ Sbjct: 92 IKAII------LFFSVQISLQDLDGPVLISEALEISKDLIYEKKEVAFINAILDKISK 143 >gi|39933110|ref|NP_945386.1| Sun/ nucleolar Nop1/Nop2 [Rhodopseudomonas palustris CGA009] gi|39652735|emb|CAE25474.1| Bacterial Sun/eukaryotic nucleolar Nop1/Nop2 [Rhodopseudomonas palustris CGA009] Length = 450 Score = 45.9 bits (108), Expect = 0.002, Method: Composition-based stats. Identities = 21/131 (16%), Positives = 46/131 (35%), Gaps = 14/131 (10%) Query: 37 TTEIISEYETYRFCADTELDVESVYL------HVDLEWFRVIIHGVMDRKQHIDLLISSC 90 +I+ R D +L+ + + D R ++ ++ R ++ L++ Sbjct: 21 AADILDGVLQKRRMLDDQLEGPAAHPGLKTLSDRDRALMRRLVATILRRLGTLEGLLAKL 80 Query: 91 LTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKF---IN 147 L S L G +++ VP + V + K+ +N Sbjct: 81 LDRGVPTD--APRAKSALLIGAAQILWM-DVPDHAAVDLSVRLVQ--SDRRAAKYAGLVN 135 Query: 148 AVLDKVSRKEE 158 AVL + +R+ + Sbjct: 136 AVLRRCAREGQ 146 >gi|148240114|ref|YP_001225501.1| ribosomal RNA small subunit methyltransferase B [Synechococcus sp. WH 7803] gi|147848653|emb|CAK24204.1| Ribosomal RNA small subunit methyltransferase B [Synechococcus sp. WH 7803] Length = 447 Score = 45.9 bits (108), Expect = 0.002, Method: Composition-based stats. Identities = 24/176 (13%), Positives = 50/176 (28%), Gaps = 35/176 (19%) Query: 1 MTIQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESV 60 M+ ++ + R +A E ++ Y A + Sbjct: 1 MSESPSRSETPGLASRRVA---------------LEVLEAVAA-GAYADVALERALRQHP 44 Query: 61 YLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMI--------LCSILRAGV 112 D + +G + +Q +D W +L + L +L G+ Sbjct: 45 LQAADRGLATELAYGAIRWRQWLDA---------W-LDKLGKVPARKQPPRLRWLLHLGL 94 Query: 113 LELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRSGCVSAI 168 +++ +P ++ V +A +N +L R E G V Sbjct: 95 YQVLRMERIPAAAAVNTTVELAKRGKLARLAPVVNGLLRAALRAREAG-DGLVQPT 149 >gi|57642239|ref|YP_184717.1| tRNA/rRNA cytosine-C5-methylase NOL1/NOP2/Sun family protein [Thermococcus kodakarensis KOD1] gi|57160563|dbj|BAD86493.1| tRNA/rRNA cytosine-C5-methylase, NOL1/NOP2/Sun family, fused to N-terminal NusB regulator domain [Thermococcus kodakarensis KOD1] Length = 450 Score = 45.9 bits (108), Expect = 0.002, Method: Composition-based stats. Identities = 20/88 (22%), Positives = 38/88 (43%), Gaps = 2/88 (2%) Query: 68 WFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVII 127 + + + ID +I+S L + LD L ++LR G E+ VP + Sbjct: 49 LAHAYVFEIEKWRAKIDFIINSVL-KGSKVEDLDPYLANLLRIGTFEIHFRK-VPPALAT 106 Query: 128 SEYVCIAHDFFYGDEPKFINAVLDKVSR 155 V + + F KF+NA++ ++ + Sbjct: 107 DSIVRVVKEKFDFSRAKFVNALMHEIEK 134 >gi|316931426|ref|YP_004106408.1| Fmu (Sun) domain-containing protein [Rhodopseudomonas palustris DX-1] gi|315599140|gb|ADU41675.1| Fmu (Sun) domain protein [Rhodopseudomonas palustris DX-1] Length = 450 Score = 45.9 bits (108), Expect = 0.002, Method: Composition-based stats. Identities = 21/131 (16%), Positives = 46/131 (35%), Gaps = 14/131 (10%) Query: 37 TTEIISEYETYRFCADTELDVESVYL------HVDLEWFRVIIHGVMDRKQHIDLLISSC 90 +I+ R D +L+ + + D R ++ ++ R ++ L++ Sbjct: 21 AADILDGVLQKRRMLDDQLEGPAAHPGLKTLSDRDRALMRRLVATILRRLGTLEGLLARL 80 Query: 91 LTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKF---IN 147 L S L G +++ VP + V + K+ +N Sbjct: 81 LDRGVPTD--APRAKSALLIGAAQILWM-DVPDHAAVDLSVRLVQ--SDRRAAKYAGLVN 135 Query: 148 AVLDKVSRKEE 158 AVL + +R+ + Sbjct: 136 AVLRRCAREGQ 146 >gi|146329596|ref|YP_001209088.1| rRNA SAM-dependent methyltransferase, Fmu [Dichelobacter nodosus VCS1703A] gi|146233066|gb|ABQ14044.1| rRNA SAM-dependent methyltransferase, Fmu [Dichelobacter nodosus VCS1703A] Length = 418 Score = 45.9 bits (108), Expect = 0.002, Method: Composition-based stats. Identities = 25/139 (17%), Positives = 53/139 (38%), Gaps = 17/139 (12%) Query: 18 IARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVM 77 AR AA + L+ + S +++ ++ + +D ++ +++G + Sbjct: 2 KAREAAARTLFAVIEQRQSLNQLLPAFK-------------NQLPDIDRALYQELVYGTL 48 Query: 78 DRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDF 137 + + L + L + + L I IL G+ +L+ V+ E V + Sbjct: 49 REYRSLSFLHNRLLHQPLDKNPLPAI---ILNLGIYQLLRLTLGDHGVV-HETVELCKKL 104 Query: 138 FYGDEPKFINAVLDKVSRK 156 NAVL +V R+ Sbjct: 105 RCPAVSGLTNAVLRRVQRE 123 >gi|269120809|ref|YP_003308986.1| Fmu (Sun) domain protein [Sebaldella termitidis ATCC 33386] gi|268614687|gb|ACZ09055.1| Fmu (Sun) domain protein [Sebaldella termitidis ATCC 33386] Length = 437 Score = 45.9 bits (108), Expect = 0.002, Method: Composition-based stats. Identities = 21/102 (20%), Positives = 36/102 (35%), Gaps = 10/102 (9%) Query: 59 SVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLT--EKWSFSRLDMILCSILRAGVLELI 116 Y + + IIH + ID LI + +K +L LR V + + Sbjct: 33 KGYNKKEKSFITNIIHTTLKNLIFIDYLIEKNASNIKKRKIKQL-------LRISVAQFL 85 Query: 117 ECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEE 158 I+ E V A + F+N +L + +K + Sbjct: 86 LNKESDYSGIVFEAVETAKII-NKHQTGFVNVILRNIFQKYD 126 >gi|294786452|ref|ZP_06751706.1| Sun protein [Parascardovia denticolens F0305] gi|315226022|ref|ZP_07867810.1| ribosomal RNA small subunit methyltransferase B [Parascardovia denticolens DSM 10105] gi|294485285|gb|EFG32919.1| Sun protein [Parascardovia denticolens F0305] gi|315120154|gb|EFT83286.1| ribosomal RNA small subunit methyltransferase B [Parascardovia denticolens DSM 10105] Length = 540 Score = 45.9 bits (108), Expect = 0.002, Method: Composition-based stats. Identities = 20/92 (21%), Positives = 40/92 (43%), Gaps = 5/92 (5%) Query: 65 DLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVE 124 D +++G + + +D +I+ R+++ + R GV +L+ S P Sbjct: 59 DRAAVTDMVYGTLRWQGFLDAVIADVSFR--PLKRIEIPVLDAARLGVYQLLFLGS-PDY 115 Query: 125 VIISEYVCIAHDFFYGDE--PKFINAVLDKVS 154 +S+ V + D F+NA+L KV+ Sbjct: 116 AAVSQTVGLLRRGGRSDARAAGFVNALLRKVA 147 >gi|88801025|ref|ZP_01116574.1| hypothetical protein MED297_05044 [Reinekea sp. MED297] gi|88776228|gb|EAR07454.1| hypothetical protein MED297_05044 [Reinekea sp. MED297] Length = 427 Score = 45.9 bits (108), Expect = 0.002, Method: Composition-based stats. Identities = 25/126 (19%), Positives = 45/126 (35%), Gaps = 10/126 (7%) Query: 37 TTEIISEYETYRFCADTELDVESVYLHVDL-EWFRVIIHGVMDRKQHIDLLISSCLTEKW 95 EI+ + + EL ++ D + + +++G +D LI L + Sbjct: 8 AAEILLQVVDEGRSLNDELPRRLKHIDPDQQAFLQQLVYGSTRYYFALDELI--NLLVEK 65 Query: 96 SF---SRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDK 152 RL +L +I G+ +L V I+E V +NA L + Sbjct: 66 PIRGKERLVHMLLAI---GLYQL-WHLDVAEHAAINETVEATLTAKKQWAKNLVNASLRR 121 Query: 153 VSRKEE 158 R+ E Sbjct: 122 FQRERE 127 >gi|303240317|ref|ZP_07326836.1| Fmu (Sun) domain protein [Acetivibrio cellulolyticus CD2] gi|302592227|gb|EFL61956.1| Fmu (Sun) domain protein [Acetivibrio cellulolyticus CD2] Length = 471 Score = 45.9 bits (108), Expect = 0.002, Method: Composition-based stats. Identities = 31/164 (18%), Positives = 52/164 (31%), Gaps = 34/164 (20%) Query: 10 LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF 69 + S + R A++ L DI + S + LD+ D + Sbjct: 1 MGTSKKELRIREIALEIL--NDITENGSN---SNLVLSNYFNKYTLDIN------DEIFI 49 Query: 70 RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSV-------- 121 ++ G + K I I K ++ + +ILR GV E + Sbjct: 50 TSLVLGTLRLKVSIQYAIE---VPKKIAKKISPCIMNILRLGVYEHFYGDVIPNPDESFT 106 Query: 122 ------PVEV------IISEYVCIAHDFFYGDEPKFINAVLDKV 153 P + I+EYV IA + AVL ++ Sbjct: 107 SYTGNEPYRIEKPKCKYINEYVRIAEKCGQRSGALVVEAVLSRL 150 >gi|261364702|ref|ZP_05977585.1| ribosomal RNA small subunit methyltransferase B [Neisseria mucosa ATCC 25996] gi|288566995|gb|EFC88555.1| ribosomal RNA small subunit methyltransferase B [Neisseria mucosa ATCC 25996] Length = 419 Score = 45.9 bits (108), Expect = 0.002, Method: Composition-based stats. Identities = 24/126 (19%), Positives = 49/126 (38%), Gaps = 17/126 (13%) Query: 34 GCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTE 93 G + +++++ A EL + D+ + G + +++ L + Sbjct: 20 GRNLQDVLAQIRA----AHPELTAQENGALQDIAY------GCQRYLGSLKHMLAQMLKK 69 Query: 94 KWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVC-IAHDFFYGDEPKFINAVLDK 152 + L S+L A + +L + P V+ +E V IA G F NA+L + Sbjct: 70 --PID--NPQLESLLLAAMYQLHYTRNAPHAVV-NEAVESIAKI-GRGQFRSFANAILRR 123 Query: 153 VSRKEE 158 R+ + Sbjct: 124 FLRERQ 129 >gi|71278391|ref|YP_266800.1| sun protein [Colwellia psychrerythraea 34H] gi|71144131|gb|AAZ24604.1| sun protein [Colwellia psychrerythraea 34H] Length = 440 Score = 45.9 bits (108), Expect = 0.002, Method: Composition-based stats. Identities = 20/115 (17%), Positives = 39/115 (33%), Gaps = 3/115 (2%) Query: 48 RFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSI 107 R +D + + D + I +GV+ ++ +S + + + + Sbjct: 21 RSLSDELPKQQDKLIGKDKGLLQEICYGVLRYLPELENDVSQLVQK--PIKGKQRVFHFL 78 Query: 108 LRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRS 162 L GV ++ +P +SE V +NAVL R E + Sbjct: 79 LLVGVYQIRYMR-IPDHAAVSETVAATKTLKNDHMKGLVNAVLRGFLRALEAENK 132 >gi|320666401|gb|EFX33384.1| 16S rRNA methyltransferase B [Escherichia coli O157:H7 str. LSU-61] Length = 429 Score = 45.9 bits (108), Expect = 0.002, Method: Composition-based stats. Identities = 20/130 (15%), Positives = 49/130 (37%), Gaps = 3/130 (2%) Query: 29 QIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLIS 88 Q ++ + + E + ++ ++ D + + GV+ +D LI+ Sbjct: 4 QRNLRSMAAQVVEQVVEQGQSLSNILPPLQQKVSDKDKALLQELCFGVLRTLSQLDWLIN 63 Query: 89 SCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINA 148 + + + + ++ G+ +L+ +P ++E V A IN Sbjct: 64 KSMARPMTGKQ--RTVHYLIMVGLYQLLYTR-IPPHAALAETVEGAIAIKRPQLKGLING 120 Query: 149 VLDKVSRKEE 158 VL + R++E Sbjct: 121 VLRQFQRQQE 130 >gi|192288464|ref|YP_001989069.1| Fmu (Sun) domain protein [Rhodopseudomonas palustris TIE-1] gi|192282213|gb|ACE98593.1| Fmu (Sun) domain protein [Rhodopseudomonas palustris TIE-1] Length = 450 Score = 45.9 bits (108), Expect = 0.002, Method: Composition-based stats. Identities = 21/131 (16%), Positives = 46/131 (35%), Gaps = 14/131 (10%) Query: 37 TTEIISEYETYRFCADTELDVESVYL------HVDLEWFRVIIHGVMDRKQHIDLLISSC 90 +I+ R D +L+ + + D R ++ ++ R ++ L++ Sbjct: 21 AADILDGVLQKRRMLDDQLEGPAAHPGLKTLSDRDRALMRRLVATILRRLGTLEGLLAKL 80 Query: 91 LTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKF---IN 147 L S L G +++ VP + V + K+ +N Sbjct: 81 LDRGVPTD--APRAKSALLIGAAQILWM-DVPDHAAVDLSVRLVQ--SDRRAAKYAGLVN 135 Query: 148 AVLDKVSRKEE 158 AVL + +R+ + Sbjct: 136 AVLRRCAREGQ 146 >gi|257066168|ref|YP_003152424.1| Fmu (Sun) domain-containing protein [Anaerococcus prevotii DSM 20548] gi|256798048|gb|ACV28703.1| Fmu (Sun) domain protein [Anaerococcus prevotii DSM 20548] Length = 430 Score = 45.9 bits (108), Expect = 0.002, Method: Composition-based stats. Identities = 26/123 (21%), Positives = 48/123 (39%), Gaps = 7/123 (5%) Query: 39 EIISEYETYRFCADTELDVESVYLH---VDLEWFRVIIHGVMDRKQHIDLLISSCLTEKW 95 E+I C D + + E YL +L + +I+GV++ K +ID +I K Sbjct: 5 ELILNSLVRIICEDKKSNEEINYLEKRVGNLPYATKVIYGVLENKIYIDYMIGKLSKIKL 64 Query: 96 SFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSR 155 ++ +IL G+ + + + V + F+NA+L R Sbjct: 65 KKIHKNV--LTILEIGIYNI-HFLETKDYATVDKLVELTKR-KNRRSSGFVNAILRNFIR 120 Query: 156 KEE 158 E+ Sbjct: 121 DEK 123 >gi|206896332|ref|YP_002247123.1| hypothetical protein COPRO5265_0776 [Coprothermobacter proteolyticus DSM 5265] gi|206738949|gb|ACI18027.1| hypothetical protein COPRO5265_0776 [Coprothermobacter proteolyticus DSM 5265] Length = 148 Score = 45.9 bits (108), Expect = 0.002, Method: Composition-based stats. Identities = 28/153 (18%), Positives = 57/153 (37%), Gaps = 17/153 (11%) Query: 12 LSHRRGI----ARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLE 67 +S RG R +Q L ++ S ++ L V Sbjct: 1 MSKSRGKLFETGRELLLQELLGYELGLTSQEDL-----------WPRLKVALPKSDRVKR 49 Query: 68 WFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVP-VEVI 126 + +++ ++ ++ ID+ I L K SF+ + I+R V+E + +I Sbjct: 50 HIKRLLNAYLENREEIDIWIDHSLKSK-SFAAYSDLEKMIMRLAVVETRFFGDEKMMPII 108 Query: 127 ISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEI 159 +S +V IA + K I+A++ ++ Sbjct: 109 VSTWVDIARRYVDESFAKAIHAIMGTCYEEQNA 141 >gi|260439509|ref|ZP_05793325.1| putative 16S RNA methyltransferase [Neisseria gonorrhoeae DGI2] gi|268602401|ref|ZP_06136568.1| 16S RNA methyltransferase [Neisseria gonorrhoeae PID18] gi|268604663|ref|ZP_06138830.1| 16S RNA methyltransferase [Neisseria gonorrhoeae PID1] gi|291042746|ref|ZP_06568487.1| 16S RNA methyltransferase [Neisseria gonorrhoeae DGI2] gi|268586532|gb|EEZ51208.1| 16S RNA methyltransferase [Neisseria gonorrhoeae PID18] gi|268588794|gb|EEZ53470.1| 16S RNA methyltransferase [Neisseria gonorrhoeae PID1] gi|291013180|gb|EFE05146.1| 16S RNA methyltransferase [Neisseria gonorrhoeae DGI2] Length = 419 Score = 45.9 bits (108), Expect = 0.002, Method: Composition-based stats. Identities = 23/119 (19%), Positives = 45/119 (37%), Gaps = 13/119 (10%) Query: 41 ISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRL 100 + + + A +L + D+ + G + +++ L + Sbjct: 23 LQDVLAHIRAAHPQLTAQENGALQDIAY------GCQRYLGSLKHMLAQMLKK--PID-- 72 Query: 101 DMILCSILRAGVLELIECHSVPVEVIISEYVC-IAHDFFYGDEPKFINAVLDKVSRKEE 158 + L S+L A + +L + P V+ +E V IA G F NAVL + R+ + Sbjct: 73 NPQLESLLLAALYQLHYTRNAPHAVV-NEAVESIAKI-GRGQYRSFANAVLRRFLRERD 129 >gi|240116730|ref|ZP_04730792.1| putative 16S RNA methyltransferase [Neisseria gonorrhoeae PID18] gi|240118952|ref|ZP_04733014.1| putative 16S RNA methyltransferase [Neisseria gonorrhoeae PID1] Length = 417 Score = 45.9 bits (108), Expect = 0.002, Method: Composition-based stats. Identities = 23/119 (19%), Positives = 45/119 (37%), Gaps = 13/119 (10%) Query: 41 ISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRL 100 + + + A +L + D+ + G + +++ L + Sbjct: 21 LQDVLAHIRAAHPQLTAQENGALQDIAY------GCQRYLGSLKHMLAQMLKK--PID-- 70 Query: 101 DMILCSILRAGVLELIECHSVPVEVIISEYVC-IAHDFFYGDEPKFINAVLDKVSRKEE 158 + L S+L A + +L + P V+ +E V IA G F NAVL + R+ + Sbjct: 71 NPQLESLLLAALYQLHYTRNAPHAVV-NEAVESIAKI-GRGQYRSFANAVLRRFLRERD 127 >gi|261380548|ref|ZP_05985121.1| ribosomal RNA small subunit methyltransferase B [Neisseria subflava NJ9703] gi|284796516|gb|EFC51863.1| ribosomal RNA small subunit methyltransferase B [Neisseria subflava NJ9703] Length = 419 Score = 45.5 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 25/126 (19%), Positives = 49/126 (38%), Gaps = 17/126 (13%) Query: 34 GCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTE 93 GC+ ++++E A +L + D+ + G + ++ L + Sbjct: 20 GCNLQDVLAEIRA----AHPQLTAQENGALQDIAY------GCQRYLGSLKYMLGQMLKK 69 Query: 94 KWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVC-IAHDFFYGDEPKFINAVLDK 152 + L S+L A + +L + P V+ +E V IA G F NA+L + Sbjct: 70 --PID--NPQLESLLLAAMYQLHYTRNAPHAVV-NEAVESIAKI-GRGQFRSFANAILRR 123 Query: 153 VSRKEE 158 R+ + Sbjct: 124 FLRERD 129 >gi|262273082|ref|ZP_06050899.1| ribosomal RNA small subunit methyltransferase B [Grimontia hollisae CIP 101886] gi|262222838|gb|EEY74146.1| ribosomal RNA small subunit methyltransferase B [Grimontia hollisae CIP 101886] Length = 426 Score = 45.5 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 24/147 (16%), Positives = 49/147 (33%), Gaps = 16/147 (10%) Query: 20 RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79 R A Q +YQ+ G S + + + D + I +GV+ Sbjct: 4 RAVAAQVIYQVVDQGQSLSAAL-------------PPAQQKVAPRDGALLQEICYGVLRW 50 Query: 80 KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139 ++ + S + + + ++ G+ +L +P ++E V Sbjct: 51 LPRLESITQSLMDK--PLKGKQRVFHHLILVGLYQLSYMR-IPAHAAVAETVNATKVLKK 107 Query: 140 GDEPKFINAVLDKVSRKEEIKRSGCVS 166 +NAVL R +E + V+ Sbjct: 108 PQLRGLVNAVLRSYQRNQETLDAASVA 134 >gi|254700459|ref|ZP_05162287.1| Sun [Brucella suis bv. 5 str. 513] gi|261750960|ref|ZP_05994669.1| fmu domain-containing protein [Brucella suis bv. 5 str. 513] gi|261740713|gb|EEY28639.1| fmu domain-containing protein [Brucella suis bv. 5 str. 513] Length = 465 Score = 45.5 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 28/162 (17%), Positives = 55/162 (33%), Gaps = 23/162 (14%) Query: 2 TIQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVY 61 T ++ DL+ ARL A + L +I + + D Sbjct: 17 TNSNSAADLRPGL---AARLCAARLL----------GAVIEKNTSLDGLTDNAHGHPQYL 63 Query: 62 L--HVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECH 119 D R I+ + + I+ I+ L + L +L V ++ Sbjct: 64 ALEPRDRALVRAILGSALRNRGSIERAINKRLDR--PLPENAVALKHLLHVAVAQIFY-L 120 Query: 120 SVPVEVIISEYVCIAHDFFYGDEPKF---INAVLDKVSRKEE 158 +P ++ V A+ K+ +NA+L +++R +E Sbjct: 121 DLPDHSVVDLAVEAAN--SDPRNRKYAGLVNALLRRLARNKE 160 >gi|240015126|ref|ZP_04722039.1| putative 16S RNA methyltransferase [Neisseria gonorrhoeae DGI18] gi|268600059|ref|ZP_06134226.1| 16S RNA methyltransferase [Neisseria gonorrhoeae MS11] gi|268584190|gb|EEZ48866.1| 16S RNA methyltransferase [Neisseria gonorrhoeae MS11] Length = 419 Score = 45.5 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 23/119 (19%), Positives = 45/119 (37%), Gaps = 13/119 (10%) Query: 41 ISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRL 100 + + + A +L + D+ + G + +++ L + Sbjct: 23 LQDVLAHIRAAHPQLTAQENGALQDIAY------GCQRYLGSLKHMLAQMLKK--PID-- 72 Query: 101 DMILCSILRAGVLELIECHSVPVEVIISEYVC-IAHDFFYGDEPKFINAVLDKVSRKEE 158 + L S+L A + +L + P V+ +E V IA G F NAVL + R+ + Sbjct: 73 NPQLESLLLAALYQLHYTRNAPHAVV-NEAVESIAKI-GRGQYRSFANAVLRRFLRERD 129 >gi|153802771|ref|ZP_01957357.1| sun protein [Vibrio cholerae MZO-3] gi|124121684|gb|EAY40427.1| sun protein [Vibrio cholerae MZO-3] Length = 434 Score = 45.5 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 32/139 (23%), Positives = 51/139 (36%), Gaps = 16/139 (11%) Query: 20 RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79 R AA ALYQ+ +G S ++ + + D + I +GV+ + Sbjct: 12 RAAAASALYQVVDLGHSLSDAL-------------PAAQQQIRPRDHALLQEICYGVLRQ 58 Query: 80 KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139 + IS L EK + ++ G+ +L +P + E V A D Sbjct: 59 LPRL-ESISQALMEK-PLKGKQRVFHFLILVGLYQLSFMR-IPAHAAVGETVEGAQDLKG 115 Query: 140 GDEPKFINAVLDKVSRKEE 158 INAVL R +E Sbjct: 116 PRLRGLINAVLRNYQRDQE 134 >gi|262040752|ref|ZP_06013983.1| RNA methyltransferase Sun [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|259041896|gb|EEW42936.1| RNA methyltransferase Sun [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] Length = 431 Score = 45.5 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 25/140 (17%), Positives = 52/140 (37%), Gaps = 16/140 (11%) Query: 20 RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79 R A QA+ Q+ G S + ++ ++ D + + GV+ Sbjct: 8 RSLAAQAIEQVIEKGQSLSNVL-------------PPLQQKVSDKDKALLQELCFGVLRT 54 Query: 80 KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139 ++ LIS + + + + ++ G+ +L+ +P ++E V A Sbjct: 55 LSQLEWLISKLMARPMTGKQ--RTVHFLIMVGLYQLLYTR-IPPHAALAETVEGAVAIKR 111 Query: 140 GDEPKFINAVLDKVSRKEEI 159 IN VL + R++E Sbjct: 112 PQLKGLINGVLRQFQRQQEA 131 >gi|240017576|ref|ZP_04724116.1| putative 16S RNA methyltransferase [Neisseria gonorrhoeae FA6140] gi|240113994|ref|ZP_04728484.1| putative 16S RNA methyltransferase [Neisseria gonorrhoeae MS11] gi|240122197|ref|ZP_04735159.1| putative 16S RNA methyltransferase [Neisseria gonorrhoeae PID24-1] Length = 417 Score = 45.5 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 23/119 (19%), Positives = 45/119 (37%), Gaps = 13/119 (10%) Query: 41 ISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRL 100 + + + A +L + D+ + G + +++ L + Sbjct: 21 LQDVLAHIRAAHPQLTAQENGALQDIAY------GCQRYLGSLKHMLAQMLKK--PID-- 70 Query: 101 DMILCSILRAGVLELIECHSVPVEVIISEYVC-IAHDFFYGDEPKFINAVLDKVSRKEE 158 + L S+L A + +L + P V+ +E V IA G F NAVL + R+ + Sbjct: 71 NPQLESLLLAALYQLHYTRNAPHAVV-NEAVESIAKI-GRGQYRSFANAVLRRFLRERD 127 >gi|256160512|ref|ZP_05458201.1| Sun [Brucella ceti M490/95/1] gi|256255718|ref|ZP_05461254.1| Sun [Brucella ceti B1/94] gi|261222929|ref|ZP_05937210.1| fmu domain-containing protein [Brucella ceti B1/94] gi|265998888|ref|ZP_06111445.1| fmu domain-containing protein [Brucella ceti M490/95/1] gi|260921513|gb|EEX88166.1| fmu domain-containing protein [Brucella ceti B1/94] gi|262553577|gb|EEZ09346.1| fmu domain-containing protein [Brucella ceti M490/95/1] Length = 465 Score = 45.5 bits (107), Expect = 0.003, Method: Composition-based stats. Identities = 28/162 (17%), Positives = 54/162 (33%), Gaps = 23/162 (14%) Query: 2 TIQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVY 61 T ++ DL+ ARL A + L +I + + D Sbjct: 17 TNSNSAADLRPGL---AARLCAARLL----------GAVIEKNTSLDGLTDNAHGHPQYL 63 Query: 62 L--HVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECH 119 D R I+ + + I+ I+ L + L +L V ++ Sbjct: 64 ALEPRDRALVRAILGSALRNRGSIERAINKRLDR--PLPENAVALKHLLHVAVAQIFY-L 120 Query: 120 SVPVEVIISEYVCIAHDFFYGDEPKF---INAVLDKVSRKEE 158 +P + V A+ K+ +NA+L +++R +E Sbjct: 121 DLPDHSAVDLAVEAAN--SDPRNRKYAGLVNALLRRLARNKE 160 >gi|261391650|emb|CAX49098.1| ribosomal RNA small subunit methyltransferase B (rRNA (cytosine-C(5)-)-methyltransferase; 16S rRNA m5C967 methyltransferase) [Neisseria meningitidis 8013] Length = 419 Score = 45.5 bits (107), Expect = 0.003, Method: Composition-based stats. Identities = 23/119 (19%), Positives = 45/119 (37%), Gaps = 13/119 (10%) Query: 41 ISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRL 100 + + + A +L + D+ + G + +++ L + Sbjct: 23 LQDVLVHIRAAHPDLTAQENGALQDIAY------GCQRYLGSLKHMLAQMLKK--PID-- 72 Query: 101 DMILCSILRAGVLELIECHSVPVEVIISEYVC-IAHDFFYGDEPKFINAVLDKVSRKEE 158 + L S+L A + +L + P V+ +E V IA G F NAVL + R+ + Sbjct: 73 NPQLESLLLAALYQLHYTRNAPHAVV-NEAVESIAKI-GRGQYRSFANAVLRRFLRERD 129 >gi|94987318|ref|YP_595251.1| tRNA and rRNA cytosine-C5-methylases [Lawsonia intracellularis PHE/MN1-00] gi|94731567|emb|CAJ54930.1| tRNA and rRNA cytosine-C5-methylases [Lawsonia intracellularis PHE/MN1-00] Length = 447 Score = 45.5 bits (107), Expect = 0.003, Method: Composition-based stats. Identities = 26/155 (16%), Positives = 49/155 (31%), Gaps = 17/155 (10%) Query: 6 NKKDLKLSHRRGI--ARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLH 63 + K ++R+ AR A AL Q G +++ + Sbjct: 3 KSPEKKYTNRKKTKTAREIATIAL-QKIKEGQPIQVLLNNIL-----------LTYPLSK 50 Query: 64 VDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPV 123 D+ +++G + + I ++ L + L + I+ EL+ +P Sbjct: 51 QDIALVTELVYGYLRLEIRIVWILEQFLKKS---EHLPYEVKLIIGLATYELLFLDKIPP 107 Query: 124 EVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEE 158 I V F NA L + RK + Sbjct: 108 YATIHTAVSTIKSKFGKILAGVANASLQTIFRKSK 142 >gi|319404848|emb|CBI78449.1| SUN-family protein [Bartonella rochalimae ATCC BAA-1498] Length = 456 Score = 45.5 bits (107), Expect = 0.003, Method: Composition-based stats. Identities = 20/100 (20%), Positives = 37/100 (37%), Gaps = 8/100 (8%) Query: 65 DLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVE 124 D R I+ + + I + +S L L +L + +++ +P Sbjct: 58 DRLLCRAILGAALRHRSQITVALSRFLVR--PLPAQAFSLHHLLHISITQILY-LDIPDH 114 Query: 125 VIISEYVCIAHDFFYGDEPKF---INAVLDKVSRKEEIKR 161 I V +A P+F +NA+L +R+ I R Sbjct: 115 AAIDLAVRVAKI--DPRMPRFSGLVNAILRNFAREAPILR 152 >gi|240851336|ref|YP_002972739.1| SUN-family protein [Bartonella grahamii as4aup] gi|240268459|gb|ACS52047.1| SUN-family protein [Bartonella grahamii as4aup] Length = 454 Score = 45.5 bits (107), Expect = 0.003, Method: Composition-based stats. Identities = 19/98 (19%), Positives = 35/98 (35%), Gaps = 8/98 (8%) Query: 62 LHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSV 121 D R I+ + + I +S L L L +L V +++ + Sbjct: 54 SQRDRLLCRAILTASLRHRGQITAALSRLLARPLPSQALS--LQHLLHISVAQILY-LDI 110 Query: 122 PVEVIISEYVCIAHDFFYGDEPKF---INAVLDKVSRK 156 P I V +A +F +NA+L ++R+ Sbjct: 111 PDHAAIDLAVRVAK--LDPRMRRFSGVVNALLRNIARE 146 >gi|91975197|ref|YP_567856.1| Fmu (Sun) [Rhodopseudomonas palustris BisB5] gi|91681653|gb|ABE37955.1| Fmu (Sun) [Rhodopseudomonas palustris BisB5] Length = 450 Score = 45.5 bits (107), Expect = 0.003, Method: Composition-based stats. Identities = 21/131 (16%), Positives = 46/131 (35%), Gaps = 14/131 (10%) Query: 37 TTEIISEYETYRFCADTELDVESVYL------HVDLEWFRVIIHGVMDRKQHIDLLISSC 90 +I+ R D +L+ + + D R ++ ++ R ++ L++ Sbjct: 21 AADILDGVLQKRRTLDEQLEGPAAHPGLKTLPDRDRALMRRLVATILRRLGTLEHLLARM 80 Query: 91 LTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKF---IN 147 L S L G +++ VP + V + K+ +N Sbjct: 81 LDRGVPTD--APRAKSALLIGAAQILWM-DVPDHAAVDLSVRLVQ--SDRRAAKYAGLVN 135 Query: 148 AVLDKVSRKEE 158 AVL + +R+ + Sbjct: 136 AVLRRCAREGQ 146 >gi|293398234|ref|ZP_06642439.1| ribosomal RNA small subunit methyltransferase B [Neisseria gonorrhoeae F62] gi|291611497|gb|EFF40567.1| ribosomal RNA small subunit methyltransferase B [Neisseria gonorrhoeae F62] Length = 419 Score = 45.5 bits (107), Expect = 0.003, Method: Composition-based stats. Identities = 23/119 (19%), Positives = 45/119 (37%), Gaps = 13/119 (10%) Query: 41 ISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRL 100 + + + A +L + D+ + G + +++ L + Sbjct: 23 LQDVLAHIRAAHPQLTAQENGALQDIAY------GCQRYLGSLKHMLAQMLKK--PID-- 72 Query: 101 DMILCSILRAGVLELIECHSVPVEVIISEYVC-IAHDFFYGDEPKFINAVLDKVSRKEE 158 + L S+L A + +L + P V+ +E V IA G F NAVL + R+ + Sbjct: 73 NPQLESLLLAALYQLHYTRNAPHAVV-NEAVESIAKI-GRGQYRSFANAVLRRFLRERD 129 >gi|149203489|ref|ZP_01880459.1| ribosomal RNA small subunit methyltransferase B, putative [Roseovarius sp. TM1035] gi|149143322|gb|EDM31361.1| ribosomal RNA small subunit methyltransferase B, putative [Roseovarius sp. TM1035] Length = 422 Score = 45.5 bits (107), Expect = 0.003, Method: Composition-based stats. Identities = 23/110 (20%), Positives = 40/110 (36%), Gaps = 20/110 (18%) Query: 59 SVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIEC 118 D + + + D L+S L + + ++LR +EL + Sbjct: 36 EPLAPADRARAQRLASETLRGLARADRLLSRHLRKGPPL----PV-QNVLRLATVELAQG 90 Query: 119 HSVPVEVIISEYVCIAHDFFYGDEPK------FINAVLDKVSRKEEIKRS 162 ++++ V I G P+ +NAVL KV+ EE RS Sbjct: 91 GESHG--VVNDAVDI-----IGQSPRHANLKGLVNAVLRKVA--EEAPRS 131 >gi|294669086|ref|ZP_06734172.1| ribosomal RNA small subunit methyltransferase B [Neisseria elongata subsp. glycolytica ATCC 29315] gi|291309078|gb|EFE50321.1| ribosomal RNA small subunit methyltransferase B [Neisseria elongata subsp. glycolytica ATCC 29315] Length = 420 Score = 45.5 bits (107), Expect = 0.003, Method: Composition-based stats. Identities = 26/134 (19%), Positives = 52/134 (38%), Gaps = 10/134 (7%) Query: 29 QIDIIGCSTTEIISEYETYRFCADTELDVESVYLHV---DLEWFRVIIHGVMDRKQHIDL 85 + + E I+ R D + + + + +L + I +G + Sbjct: 2 SMSLAQQLAAESIAAVAKGRNLQDVLAAIRAAHPELTAQELGALQDIAYGCQRYLGSLKY 61 Query: 86 LISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVC-IAHDFFYGDEPK 144 +++ L + + L S+L A + +L + P V+ +E V IA G Sbjct: 62 MLAQMLKK--PIG--NPQLESLLLAALYQLNHTRNAPHAVV-NEAVENIAKI-GRGQYRS 115 Query: 145 FINAVLDKVSRKEE 158 F NA+L + R++E Sbjct: 116 FANAILRRFLREKE 129 >gi|319780892|ref|YP_004140368.1| Fmu (Sun) domain protein [Mesorhizobium ciceri biovar biserrulae WSM1271] gi|317166780|gb|ADV10318.1| Fmu (Sun) domain protein [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 475 Score = 45.1 bits (106), Expect = 0.003, Method: Composition-based stats. Identities = 19/109 (17%), Positives = 40/109 (36%), Gaps = 8/109 (7%) Query: 65 DLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVE 124 D R I+ + + I L++ L + + L IL +++ +P Sbjct: 81 DRGLVRAILVTALRYRMTISGLLARRLEKPLPPN--ATALSHILHVAAAQILF-LDIPDS 137 Query: 125 VIISEYVCIAHDFFYGDEPKF---INAVLDKVSRKEEIKRSGCVSAITQ 170 + V A +F +N VL ++R +E + ++A + Sbjct: 138 AAVDIAVTHAK--SDPRTVRFSGLVNGVLRTLARAKETELPAALAATDE 184 >gi|62290679|ref|YP_222472.1| Sun, sun protein [Brucella abortus bv. 1 str. 9-941] gi|82700594|ref|YP_415168.1| hypothetical protein BAB1_1822 [Brucella melitensis biovar Abortus 2308] gi|148559652|ref|YP_001259653.1| sun protein [Brucella ovis ATCC 25840] gi|189024891|ref|YP_001935659.1| Sun [Brucella abortus S19] gi|237816180|ref|ZP_04595175.1| Sun, sun protein [Brucella abortus str. 2308 A] gi|254689968|ref|ZP_05153222.1| Sun [Brucella abortus bv. 6 str. 870] gi|254698119|ref|ZP_05159947.1| Sun [Brucella abortus bv. 2 str. 86/8/59] gi|254708333|ref|ZP_05170161.1| Sun [Brucella pinnipedialis M163/99/10] gi|254708815|ref|ZP_05170626.1| Sun [Brucella pinnipedialis B2/94] gi|254731003|ref|ZP_05189581.1| Sun [Brucella abortus bv. 4 str. 292] gi|256030341|ref|ZP_05443955.1| Sun [Brucella pinnipedialis M292/94/1] gi|256061838|ref|ZP_05451973.1| Sun [Brucella neotomae 5K33] gi|256258223|ref|ZP_05463759.1| Sun [Brucella abortus bv. 9 str. C68] gi|256370218|ref|YP_003107729.1| sun protein [Brucella microti CCM 4915] gi|260547084|ref|ZP_05822822.1| conserved hypothetical protein [Brucella abortus NCTC 8038] gi|260755503|ref|ZP_05867851.1| fmu domain-containing protein [Brucella abortus bv. 6 str. 870] gi|260758726|ref|ZP_05871074.1| fmu domain-containing protein [Brucella abortus bv. 4 str. 292] gi|260762560|ref|ZP_05874897.1| fmu domain-containing protein [Brucella abortus bv. 2 str. 86/8/59] gi|260884524|ref|ZP_05896138.1| fmu domain-containing protein [Brucella abortus bv. 9 str. C68] gi|261315833|ref|ZP_05955030.1| fmu domain-containing protein [Brucella pinnipedialis M163/99/10] gi|261316307|ref|ZP_05955504.1| fmu domain-containing protein [Brucella pinnipedialis B2/94] gi|261325843|ref|ZP_05965040.1| fmu domain-containing protein [Brucella neotomae 5K33] gi|265987375|ref|ZP_06099932.1| fmu domain-containing protein [Brucella pinnipedialis M292/94/1] gi|294851054|ref|ZP_06791730.1| ribosomal RNA small subunit methyltransferase B [Brucella sp. NVSL 07-0026] gi|297249071|ref|ZP_06932779.1| ribosomal RNA small subunit methyltransferase B [Brucella abortus bv. 5 str. B3196] gi|62196811|gb|AAX75111.1| Sun, sun protein [Brucella abortus bv. 1 str. 9-941] gi|82616695|emb|CAJ11778.1| SAM (and some other nucleotide) binding motif:Bacterial Sun/eukaryotic nucleolar Nop1/Nop2:Antitermination protein NusB:NusB [Brucella melitensis biovar Abortus 2308] gi|148370909|gb|ABQ60888.1| sun protein [Brucella ovis ATCC 25840] gi|189020463|gb|ACD73185.1| Sun [Brucella abortus S19] gi|237788642|gb|EEP62855.1| Sun, sun protein [Brucella abortus str. 2308 A] gi|256000381|gb|ACU48780.1| sun protein [Brucella microti CCM 4915] gi|260095449|gb|EEW79327.1| conserved hypothetical protein [Brucella abortus NCTC 8038] gi|260669044|gb|EEX55984.1| fmu domain-containing protein [Brucella abortus bv. 4 str. 292] gi|260672986|gb|EEX59807.1| fmu domain-containing protein [Brucella abortus bv. 2 str. 86/8/59] gi|260675611|gb|EEX62432.1| fmu domain-containing protein [Brucella abortus bv. 6 str. 870] gi|260874052|gb|EEX81121.1| fmu domain-containing protein [Brucella abortus bv. 9 str. C68] gi|261295530|gb|EEX99026.1| fmu domain-containing protein [Brucella pinnipedialis B2/94] gi|261301823|gb|EEY05320.1| fmu domain-containing protein [Brucella neotomae 5K33] gi|261304859|gb|EEY08356.1| fmu domain-containing protein [Brucella pinnipedialis M163/99/10] gi|264659572|gb|EEZ29833.1| fmu domain-containing protein [Brucella pinnipedialis M292/94/1] gi|294821697|gb|EFG38693.1| ribosomal RNA small subunit methyltransferase B [Brucella sp. NVSL 07-0026] gi|297174204|gb|EFH33561.1| ribosomal RNA small subunit methyltransferase B [Brucella abortus bv. 5 str. B3196] Length = 465 Score = 45.1 bits (106), Expect = 0.003, Method: Composition-based stats. Identities = 28/162 (17%), Positives = 54/162 (33%), Gaps = 23/162 (14%) Query: 2 TIQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVY 61 T ++ DL+ ARL A + L +I + + D Sbjct: 17 TNSNSAADLRPGL---AARLCAARLL----------GAVIEKNTSLDGLTDNAHGHPQYL 63 Query: 62 L--HVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECH 119 D R I+ + + I+ I+ L + L +L V ++ Sbjct: 64 ALEPRDRALVRAILGSALRNRGSIERAINKRLDR--PLPENAVALKHLLHVAVAQIFY-L 120 Query: 120 SVPVEVIISEYVCIAHDFFYGDEPKF---INAVLDKVSRKEE 158 +P + V A+ K+ +NA+L +++R +E Sbjct: 121 DLPDHSAVDLAVEAAN--SDPRNRKYAGLVNALLRRLARNKE 160 >gi|296114826|ref|ZP_06833475.1| Fmu (Sun) domain protein [Gluconacetobacter hansenii ATCC 23769] gi|295978640|gb|EFG85369.1| Fmu (Sun) domain protein [Gluconacetobacter hansenii ATCC 23769] Length = 438 Score = 45.1 bits (106), Expect = 0.003, Method: Composition-based stats. Identities = 30/161 (18%), Positives = 59/161 (36%), Gaps = 15/161 (9%) Query: 1 MTIQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESV 60 M + S RR R A QA D +I++ +R +T ++ V Sbjct: 1 MKQTSAPRS---SGRRATGRGA--QAA-PADPTRDIAFDIVTGVIEHRRMLETSMENSPV 54 Query: 61 YLHV---DLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIE 117 D + V+ ++S L ++ + + ++L GV +L+ Sbjct: 55 ARQAEPRDRAAAHRLGASVLRHMGTATEVLSPFLKKEPP----EPV-RAVLLIGVAQLLF 109 Query: 118 CHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEE 158 PV ++ V +A +NAVL ++++K + Sbjct: 110 -LGTPVHAAVATSVALARRRGLAPFAGLVNAVLRRIAQKGD 149 >gi|254714655|ref|ZP_05176466.1| Sun [Brucella ceti M644/93/1] gi|254717553|ref|ZP_05179364.1| Sun [Brucella ceti M13/05/1] gi|261219386|ref|ZP_05933667.1| fmu domain-containing protein [Brucella ceti M13/05/1] gi|261322448|ref|ZP_05961645.1| fmu domain-containing protein [Brucella ceti M644/93/1] gi|260924475|gb|EEX91043.1| fmu domain-containing protein [Brucella ceti M13/05/1] gi|261295138|gb|EEX98634.1| fmu domain-containing protein [Brucella ceti M644/93/1] Length = 465 Score = 45.1 bits (106), Expect = 0.003, Method: Composition-based stats. Identities = 28/162 (17%), Positives = 54/162 (33%), Gaps = 23/162 (14%) Query: 2 TIQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVY 61 T ++ DL+ ARL A + L +I + + D Sbjct: 17 TNSNSAADLRPGL---AARLCAARLL----------GAVIEKNTSLDGLTDNAHGHPQYL 63 Query: 62 L--HVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECH 119 D R I+ + + I+ I+ L + L +L V ++ Sbjct: 64 ALEPRDRALVRAILGSALRNRGSIERAINKRLDR--PLPENAVALKHLLHVAVAQIFY-L 120 Query: 120 SVPVEVIISEYVCIAHDFFYGDEPKF---INAVLDKVSRKEE 158 +P + V A+ K+ +NA+L +++R +E Sbjct: 121 DLPDHSAVDLAVEAAN--SDPRNRKYAGLVNALLRRLARNKE 160 >gi|86747213|ref|YP_483709.1| RNA methyltransferase [Rhodopseudomonas palustris HaA2] gi|86570241|gb|ABD04798.1| RNA methyltransferase [Rhodopseudomonas palustris HaA2] Length = 450 Score = 45.1 bits (106), Expect = 0.003, Method: Composition-based stats. Identities = 21/129 (16%), Positives = 45/129 (34%), Gaps = 14/129 (10%) Query: 37 TTEIISEYETYRFCADTELDVESVYL------HVDLEWFRVIIHGVMDRKQHIDLLISSC 90 +I+ R D +L+ + + D R ++ ++ R ++ L++ Sbjct: 21 AADILDGVLQKRRMLDDQLEGPAAHPGLKTLPDRDRALMRRLVATILRRLGTLEHLLARM 80 Query: 91 LTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKF---IN 147 L S L G +++ VP + V + K+ +N Sbjct: 81 LDRGVPTD--APRAKSALLIGAAQILWM-DVPDHAAVDLSVRLVQ--SDRRAAKYAGLVN 135 Query: 148 AVLDKVSRK 156 AVL + +R+ Sbjct: 136 AVLRRCARE 144 >gi|241760436|ref|ZP_04758530.1| ribosomal RNA small subunit methyltransferase B [Neisseria flavescens SK114] gi|241319105|gb|EER55598.1| ribosomal RNA small subunit methyltransferase B [Neisseria flavescens SK114] Length = 417 Score = 45.1 bits (106), Expect = 0.003, Method: Composition-based stats. Identities = 24/126 (19%), Positives = 48/126 (38%), Gaps = 17/126 (13%) Query: 34 GCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTE 93 G + ++++E A +L + D+ + G + ++ L + Sbjct: 18 GRNLQDVLAEIRA----AHPQLTAQENGALQDIAY------GCQRYLGSLKHMLGQMLKK 67 Query: 94 KWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVC-IAHDFFYGDEPKFINAVLDK 152 + L S+L A + +L + P V+ +E V IA G F NA+L + Sbjct: 68 --PID--NPQLESLLLAAMYQLHYTRNAPHAVV-NEAVESIAKI-GRGQFRSFANAILRR 121 Query: 153 VSRKEE 158 R+ + Sbjct: 122 FLRERD 127 >gi|225075469|ref|ZP_03718668.1| hypothetical protein NEIFLAOT_00474 [Neisseria flavescens NRL30031/H210] gi|224953188|gb|EEG34397.1| hypothetical protein NEIFLAOT_00474 [Neisseria flavescens NRL30031/H210] Length = 419 Score = 45.1 bits (106), Expect = 0.003, Method: Composition-based stats. Identities = 24/126 (19%), Positives = 48/126 (38%), Gaps = 17/126 (13%) Query: 34 GCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTE 93 G + ++++E A +L + D+ + G + ++ L + Sbjct: 20 GRNLQDVLAEIRA----AHPQLTAQENGALQDIAY------GCQRYLGSLKHMLGQMLKK 69 Query: 94 KWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVC-IAHDFFYGDEPKFINAVLDK 152 + L S+L A + +L + P V+ +E V IA G F NA+L + Sbjct: 70 --PID--NPQLESLLLAAMYQLHYTRNAPHAVV-NEAVESIAKI-GRGQFRSFANAILRR 123 Query: 153 VSRKEE 158 R+ + Sbjct: 124 FLRERD 129 >gi|117618823|ref|YP_854784.1| ribosomal RNA small subunit methyltransferase B [Aeromonas hydrophila subsp. hydrophila ATCC 7966] gi|117560230|gb|ABK37178.1| ribosomal RNA small subunit methyltransferase B [Aeromonas hydrophila subsp. hydrophila ATCC 7966] Length = 430 Score = 45.1 bits (106), Expect = 0.003, Method: Composition-based stats. Identities = 16/103 (15%), Positives = 33/103 (32%), Gaps = 3/103 (2%) Query: 57 VESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELI 116 + D + + +G + +D + + + I ++ G+ +LI Sbjct: 28 AQEKVAPRDRALLQELCYGTLRWLPRLDAAVGEMMDK--PLKNKSRIFHYLILVGLYQLI 85 Query: 117 ECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEI 159 +P ++E V IN VL R E+ Sbjct: 86 YTR-IPAHAAVAETVNAVKLLKGTSLRGLINGVLRNFQRSAEV 127 >gi|121999099|ref|YP_001003886.1| sun protein [Halorhodospira halophila SL1] gi|121590504|gb|ABM63084.1| 16S rRNA m(5)C-967 methyltransferase [Halorhodospira halophila SL1] Length = 429 Score = 45.1 bits (106), Expect = 0.003, Method: Composition-based stats. Identities = 26/137 (18%), Positives = 50/137 (36%), Gaps = 18/137 (13%) Query: 20 RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79 R+AAV L ++ ET + + S + + +++G + Sbjct: 6 RVAAVHVL----------ERVLERGETLDEALEAQF---SRVSERNRSLLQALVYGALRW 52 Query: 80 KQHIDLLISSCLTEK-WSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFF 138 ++ +++ W R D +L +L G E + + P +SE V A Sbjct: 53 LTRLEAQVATLTPRDDW---RADPLLRGLLVIGAWE-AQGLATPAHAAVSEAVDAARRLR 108 Query: 139 YGDEPKFINAVLDKVSR 155 +NAVL K+ + Sbjct: 109 RARAAGMVNAVLRKLHK 125 >gi|325129148|gb|EGC51996.1| ribosomal RNA small subunit methyltransferase B [Neisseria meningitidis N1568] Length = 419 Score = 45.1 bits (106), Expect = 0.003, Method: Composition-based stats. Identities = 22/119 (18%), Positives = 45/119 (37%), Gaps = 13/119 (10%) Query: 41 ISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRL 100 + + + A +L + D+ + G + +++ L + Sbjct: 23 LQDVLVHIRAAHPDLTAQENGALQDIAY------GCQRYLGSLKHMLAQMLKK--PID-- 72 Query: 101 DMILCSILRAGVLELIECHSVPVEVIISEYVC-IAHDFFYGDEPKFINAVLDKVSRKEE 158 + L S+L A + +L + P V+ +E V IA G F NA+L + R+ + Sbjct: 73 NPQLESLLLAALYQLHYTRNAPHAVV-NEAVESIAKI-GRGQYRSFANAILRRFLRERD 129 >gi|320547878|ref|ZP_08042161.1| RNA methyltransferase Sun [Streptococcus equinus ATCC 9812] gi|320447418|gb|EFW88178.1| RNA methyltransferase Sun [Streptococcus equinus ATCC 9812] Length = 440 Score = 45.1 bits (106), Expect = 0.003, Method: Composition-based stats. Identities = 27/143 (18%), Positives = 60/143 (41%), Gaps = 15/143 (10%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 + AR A+ L E + E Y A + + D I++G Sbjct: 6 KNQARGLALLVL-----------ENVFEEGAYSNIALNQELKHTHLSQKDKSLVTEIVYG 54 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135 + RK ++ ++ + ++ +LD + +L + +L+ +P ++++ V IA Sbjct: 55 TVARKITLEWYLAHYIEDR---DKLDSWVYYLLMLSLYQLLYLDKMPAHAVVNDAVNIAK 111 Query: 136 DFFYGDEP-KFINAVLDKVSRKE 157 + KF+NAVL ++++ + Sbjct: 112 NRGNKKGAEKFVNAVLRRLTKDD 134 >gi|49474771|ref|YP_032813.1| SUN protein (Fmu protein) [Bartonella quintana str. Toulouse] gi|49240275|emb|CAF26748.1| SUN protein (FMU protein) [Bartonella quintana str. Toulouse] Length = 447 Score = 45.1 bits (106), Expect = 0.003, Method: Composition-based stats. Identities = 22/122 (18%), Positives = 42/122 (34%), Gaps = 10/122 (8%) Query: 40 IISEYETYRFCADTELDVESVY--LHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSF 97 ++ ++ + D E H D R I+ + + I +S LT Sbjct: 22 VLDKHTSLAGLTDNEHGHPQYLGLSHRDRLLCRAILGAALRHRGQITAALSRFLTRPLPL 81 Query: 98 SRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKF---INAVLDKVS 154 L +L V +++ +P I V +A +F +N +L V+ Sbjct: 82 QAFS--LQHLLHISVAQILY-LDIPDHAAIDLAVRVAKI--DPRMRRFSGLVNVLLRNVA 136 Query: 155 RK 156 R+ Sbjct: 137 RE 138 >gi|23502667|ref|NP_698794.1| sun protein [Brucella suis 1330] gi|161619734|ref|YP_001593621.1| Fmu (Sun) domain-containing protein [Brucella canis ATCC 23365] gi|163845392|ref|YP_001623047.1| hypothetical protein BSUIS_B1292 [Brucella suis ATCC 23445] gi|254703581|ref|ZP_05165409.1| hypothetical protein Bsuib36_06589 [Brucella suis bv. 3 str. 686] gi|260568886|ref|ZP_05839354.1| conserved hypothetical protein [Brucella suis bv. 4 str. 40] gi|261754214|ref|ZP_05997923.1| fmu domain-containing protein [Brucella suis bv. 3 str. 686] gi|23348676|gb|AAN30709.1| sun protein [Brucella suis 1330] gi|161336545|gb|ABX62850.1| Fmu (Sun) domain protein [Brucella canis ATCC 23365] gi|163676115|gb|ABY40225.1| Hypothetical protein, conserved [Brucella suis ATCC 23445] gi|260154270|gb|EEW89352.1| conserved hypothetical protein [Brucella suis bv. 4 str. 40] gi|261743967|gb|EEY31893.1| fmu domain-containing protein [Brucella suis bv. 3 str. 686] Length = 465 Score = 45.1 bits (106), Expect = 0.003, Method: Composition-based stats. Identities = 28/162 (17%), Positives = 53/162 (32%), Gaps = 23/162 (14%) Query: 2 TIQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVY 61 T ++ DL+ ARL A + L +I + + D Sbjct: 17 TNSNSAADLRPGL---AARLCAARLL----------GAVIEKNTSLDGLTDNAHGHPQYL 63 Query: 62 L--HVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECH 119 D R I+ + + I+ I+ L + L +L V ++ Sbjct: 64 ALEPRDRALVRAILGSALRNRGSIERAINKRLDR--PLPENAVALKHLLHVAVAQIFY-L 120 Query: 120 SVPVEVIISEYVCIAHDFFYGDEPKF---INAVLDKVSRKEE 158 +P + V A+ K+ +NA+L ++R +E Sbjct: 121 DLPDHSAVDLAVEAAN--SDPRNRKYAGLVNALLRHLARNKE 160 >gi|330831512|ref|YP_004394464.1| ribosomal RNA small subunit methyltransferase B [Aeromonas veronii B565] gi|328806648|gb|AEB51847.1| Ribosomal RNA small subunit methyltransferase B [Aeromonas veronii B565] Length = 430 Score = 45.1 bits (106), Expect = 0.003, Method: Composition-based stats. Identities = 16/103 (15%), Positives = 34/103 (33%), Gaps = 3/103 (2%) Query: 57 VESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELI 116 + D + + +G + +D ++ + + I ++ G+ +LI Sbjct: 28 AQEKVAPRDRALLQELCYGTLRWLPRLDAAVNEMMDK--PLKNKSRIFHYLILVGLYQLI 85 Query: 117 ECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEI 159 +P ++E V IN VL R E+ Sbjct: 86 YTR-IPAHAAVAETVNAVKLLKGTSLRGLINGVLRNFQRSAEV 127 >gi|85714014|ref|ZP_01045003.1| tRNA and rRNA methylase [Nitrobacter sp. Nb-311A] gi|85699140|gb|EAQ37008.1| tRNA and rRNA methylase [Nitrobacter sp. Nb-311A] Length = 454 Score = 45.1 bits (106), Expect = 0.003, Method: Composition-based stats. Identities = 22/133 (16%), Positives = 46/133 (34%), Gaps = 14/133 (10%) Query: 36 STTEIISEYETYRFCADTELDVESVYL------HVDLEWFRVIIHGVMDRKQHIDLLISS 89 + +I+ R D +L+ + + D R ++ ++ R + L+S Sbjct: 24 TAADILDGILHKRRTLDEQLEGATAHPGLKALADRDRALMRRLVATILRRLGTLGHLLSR 83 Query: 90 CLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKF---I 146 L S L G +++ VP + V + K+ + Sbjct: 84 LLDRGIPTD--APRAQSALLIGAAQILWM-DVPDHAAVDLSVRLVQ--SDRRAAKYAGLV 138 Query: 147 NAVLDKVSRKEEI 159 NAVL + +R+ + Sbjct: 139 NAVLRRCAREGQA 151 >gi|88809208|ref|ZP_01124717.1| Sun protein (Fmu protein) [Synechococcus sp. WH 7805] gi|88787150|gb|EAR18308.1| Sun protein (Fmu protein) [Synechococcus sp. WH 7805] Length = 430 Score = 45.1 bits (106), Expect = 0.003, Method: Composition-based stats. Identities = 15/104 (14%), Positives = 34/104 (32%), Gaps = 18/104 (17%) Query: 64 VDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMI--------LCSILRAGVLEL 115 D + +G + +Q +D W +L + L +L G+ ++ Sbjct: 31 ADRGLATELAYGTIRWRQWLDA---------W-LDKLGKVPARKQPPRLRWLLHLGLYQV 80 Query: 116 IECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEI 159 + +P ++ V +A +N +L R + Sbjct: 81 LRMERIPPAAAVNTSVELAKGGPLARLAPVVNGLLRAALRARDA 124 >gi|254502120|ref|ZP_05114271.1| ribosomal RNA small subunit methyltransferase B [Labrenzia alexandrii DFL-11] gi|222438191|gb|EEE44870.1| ribosomal RNA small subunit methyltransferase B [Labrenzia alexandrii DFL-11] Length = 468 Score = 45.1 bits (106), Expect = 0.003, Method: Composition-based stats. Identities = 21/131 (16%), Positives = 43/131 (32%), Gaps = 14/131 (10%) Query: 37 TTEIISEYETYRFCADTELDVESVY------LHVDLEWFRVIIHGVMDRKQHIDLLISSC 90 +I+ + D ELD+ S + D R I + + I ++ Sbjct: 41 AADILGNVVHKKRPLDGELDMASGHSGFRALAANDRALVRAIAGAALRHRGEITEILGRL 100 Query: 91 LTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKF---IN 147 L + + IL + ++ +P +S V A + +N Sbjct: 101 LDRDIP-EKTGRV-LDILHVAIAQMQF-LDIPDRAAVSLAVDHASM--DRRARPYKGLVN 155 Query: 148 AVLDKVSRKEE 158 VL ++ R+ + Sbjct: 156 GVLRRLGRERD 166 >gi|145300988|ref|YP_001143829.1| ribosomal RNA small subunit methyltransferase B [Aeromonas salmonicida subsp. salmonicida A449] gi|142853760|gb|ABO92081.1| ribosomal RNA small subunit methyltransferase B [Aeromonas salmonicida subsp. salmonicida A449] Length = 430 Score = 45.1 bits (106), Expect = 0.003, Method: Composition-based stats. Identities = 16/103 (15%), Positives = 33/103 (32%), Gaps = 3/103 (2%) Query: 57 VESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELI 116 + D + + +G + +D + + + I ++ G+ +LI Sbjct: 28 AQEKVAPRDRALLQELCYGTLRWLPRLDAAVGEMMDK--PLKNKSRIFHYLILVGLYQLI 85 Query: 117 ECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEI 159 +P ++E V IN VL R E+ Sbjct: 86 YTR-IPAHAAVAETVNAVKLLKGTSLRGLINGVLRNFQRSAEV 127 >gi|261213231|ref|ZP_05927513.1| ribosomal RNA small subunit methyltransferase B [Vibrio sp. RC341] gi|260837505|gb|EEX64208.1| ribosomal RNA small subunit methyltransferase B [Vibrio sp. RC341] Length = 426 Score = 45.1 bits (106), Expect = 0.004, Method: Composition-based stats. Identities = 32/139 (23%), Positives = 50/139 (35%), Gaps = 16/139 (11%) Query: 20 RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79 R AA ALYQ+ +G S + + + D + I +GV+ + Sbjct: 4 RAAAASALYQVVDLGQSLSNAL-------------PAAQQQIRPRDHALLQEICYGVLRQ 50 Query: 80 KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139 + IS L EK + ++ G+ +L +P + E V A D Sbjct: 51 LPRL-ESISQALMEK-PLKGKQRVFHFLILVGLYQLSFMR-IPAHAAVGETVEGAQDLKG 107 Query: 140 GDEPKFINAVLDKVSRKEE 158 INAVL R +E Sbjct: 108 PRLRGLINAVLRNYQRDQE 126 >gi|227823840|ref|YP_002827813.1| Fmu (Sun) domain protein [Sinorhizobium fredii NGR234] gi|227342842|gb|ACP27060.1| Fmu (Sun) domain protein [Sinorhizobium fredii NGR234] Length = 473 Score = 45.1 bits (106), Expect = 0.004, Method: Composition-based stats. Identities = 33/175 (18%), Positives = 57/175 (32%), Gaps = 22/175 (12%) Query: 1 MTIQDNKKDLKLSHRR-------GIARLAA-VQA---LYQIDIIGCSTTEIISEYETYRF 49 M+ ++NK D + R G A+ A +QA L +I + Sbjct: 1 MS-ENNKNDSRPKRSRPHKPSRGGGAQSGASLQAKPGLKSRQAAAKILAAVIDRNTSLDG 59 Query: 50 CADTEL--DVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSI 107 D E D R I++ + I I S L L + Sbjct: 60 MLDQEHGNPAYRELNDADRALVRAILNSALRHLPRIRAAIDSLLQT--PLPEGARALEHV 117 Query: 108 LRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKF---INAVLDKVSRKEEI 159 L +++ +P + V A +F +NAVL ++SR+++ Sbjct: 118 LTVAAAQILY-LDIPDHSAVDLAVEQAQ--SDPRNRRFASLVNAVLRRLSREKQA 169 >gi|268687548|ref|ZP_06154410.1| 16S RNA methyltransferase [Neisseria gonorrhoeae SK-93-1035] gi|268627832|gb|EEZ60232.1| 16S RNA methyltransferase [Neisseria gonorrhoeae SK-93-1035] Length = 419 Score = 45.1 bits (106), Expect = 0.004, Method: Composition-based stats. Identities = 24/119 (20%), Positives = 46/119 (38%), Gaps = 13/119 (10%) Query: 41 ISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRL 100 + + + A +L + D+ + G + +++ L + +L Sbjct: 23 LQDVLAHIRAAHPQLTAQENGALQDIAY------GCQRYLGSLKHMLAQMLKKLIDNPQL 76 Query: 101 DMILCSILRAGVLELIECHSVPVEVIISEYVC-IAHDFFYGDEPKFINAVLDKVSRKEE 158 + S+L A + +L + P V+ +E V IA G F NAVL + R+ E Sbjct: 77 E----SLLLAALYQLHYTRNAPHAVV-NEAVESIAKI-GRGQYRSFANAVLRRFLRERE 129 >gi|240129165|ref|ZP_04741826.1| putative 16S RNA methyltransferase [Neisseria gonorrhoeae SK-93-1035] Length = 417 Score = 45.1 bits (106), Expect = 0.004, Method: Composition-based stats. Identities = 24/119 (20%), Positives = 46/119 (38%), Gaps = 13/119 (10%) Query: 41 ISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRL 100 + + + A +L + D+ + G + +++ L + +L Sbjct: 21 LQDVLAHIRAAHPQLTAQENGALQDIAY------GCQRYLGSLKHMLAQMLKKLIDNPQL 74 Query: 101 DMILCSILRAGVLELIECHSVPVEVIISEYVC-IAHDFFYGDEPKFINAVLDKVSRKEE 158 + S+L A + +L + P V+ +E V IA G F NAVL + R+ E Sbjct: 75 E----SLLLAALYQLHYTRNAPHAVV-NEAVESIAKI-GRGQYRSFANAVLRRFLRERE 127 >gi|206577662|ref|YP_002236309.1| ribosomal RNA small subunit methyltransferase B [Klebsiella pneumoniae 342] gi|224493255|sp|B5XNC2|RSMB_KLEP3 RecName: Full=Ribosomal RNA small subunit methyltransferase B; AltName: Full=16S rRNA m5C967 methyltransferase; AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase rsmB gi|206566720|gb|ACI08496.1| ribosomal RNA small subunit methyltransferase B [Klebsiella pneumoniae 342] Length = 431 Score = 45.1 bits (106), Expect = 0.004, Method: Composition-based stats. Identities = 24/140 (17%), Positives = 52/140 (37%), Gaps = 16/140 (11%) Query: 20 RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79 R A QA+ Q+ G S + ++ ++ D + + GV+ Sbjct: 8 RSLAAQAIEQVIEQGQSLSNVL-------------PPLQQKVSDKDKALLQELCFGVLRT 54 Query: 80 KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139 ++ LI+ + + + + ++ G+ +L+ +P ++E V A Sbjct: 55 LSQLEWLINKLMARPMTGKQ--RTVHFLIMVGLYQLLYTR-IPPHAALAETVEGAVAIKR 111 Query: 140 GDEPKFINAVLDKVSRKEEI 159 IN VL + R++E Sbjct: 112 PQLKGLINGVLRQFQRQQEA 131 >gi|288933298|ref|YP_003437357.1| sun protein [Klebsiella variicola At-22] gi|288888027|gb|ADC56345.1| sun protein [Klebsiella variicola At-22] Length = 431 Score = 45.1 bits (106), Expect = 0.004, Method: Composition-based stats. Identities = 24/140 (17%), Positives = 52/140 (37%), Gaps = 16/140 (11%) Query: 20 RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79 R A QA+ Q+ G S + ++ ++ D + + GV+ Sbjct: 8 RSLAAQAIEQVIEQGQSLSNVL-------------PPLQQKVSDKDKALLQELCFGVLRT 54 Query: 80 KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139 ++ LI+ + + + + ++ G+ +L+ +P ++E V A Sbjct: 55 LSQLEWLINKLMARPMTGKQ--RTVHFLIMVGLYQLLYTR-IPPHAALAETVEGAVAIKR 111 Query: 140 GDEPKFINAVLDKVSRKEEI 159 IN VL + R++E Sbjct: 112 PQLKGLINGVLRQFQRQQEA 131 >gi|154251779|ref|YP_001412603.1| sun protein [Parvibaculum lavamentivorans DS-1] gi|154155729|gb|ABS62946.1| sun protein [Parvibaculum lavamentivorans DS-1] Length = 440 Score = 44.7 bits (105), Expect = 0.004, Method: Composition-based stats. Identities = 27/129 (20%), Positives = 51/129 (39%), Gaps = 12/129 (9%) Query: 37 TTEIISEYETY--RFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEK 94 T ++ E + F A+ D + R I + R ID ++S + ++ Sbjct: 19 LTAVLKERRAFDDAFIAEAASGHLRNAEPRDRAFARAITATALRRLGTIDHILSLLIDKE 78 Query: 95 WSFSRLDMILCSILRAGVLELIE-CHSVPVEVIISEYVCIAHDFFYGDEPKF---INAVL 150 R +ILRAG+ E++ + V ++ V A + F +NAVL Sbjct: 79 LP-KRAGATE-NILRAGLAEILFLRVAAHAAVGMN--VEAASR--DENARHFKALVNAVL 132 Query: 151 DKVSRKEEI 159 + +R+ + Sbjct: 133 RRATREGDA 141 >gi|311277757|ref|YP_003939988.1| sun protein [Enterobacter cloacae SCF1] gi|308746952|gb|ADO46704.1| sun protein [Enterobacter cloacae SCF1] Length = 429 Score = 44.7 bits (105), Expect = 0.004, Method: Composition-based stats. Identities = 25/140 (17%), Positives = 53/140 (37%), Gaps = 16/140 (11%) Query: 20 RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79 R A QA+ Q+ G S + ++ ++ D + + GV+ Sbjct: 8 RSLAAQAVEQVVEQGQSLSNVL-------------PPLQQKVADKDRALLQELSFGVLRT 54 Query: 80 KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139 +D LI+ ++ + + + ++ G+ +L+ +P ++E V A Sbjct: 55 LPQLDWLITQLMSRPMTGKQ--RTVHYLIMVGLYQLLHTR-IPAHAALAETVEGAVAIKR 111 Query: 140 GDEPKFINAVLDKVSRKEEI 159 IN VL + R++E Sbjct: 112 PQLKGLINGVLRQFQRQQEA 131 >gi|238896785|ref|YP_002921530.1| 16S rRNA methyltransferase B [Klebsiella pneumoniae NTUH-K2044] gi|238549112|dbj|BAH65463.1| 16S rRNA m5C967 methyltransferase [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044] Length = 431 Score = 44.7 bits (105), Expect = 0.004, Method: Composition-based stats. Identities = 25/140 (17%), Positives = 52/140 (37%), Gaps = 16/140 (11%) Query: 20 RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79 R A QA+ Q+ G S + ++ ++ D + + GV+ Sbjct: 8 RSLAAQAIEQVVEKGQSLSNVL-------------PPLQQKVSDKDKALLQELCFGVLRT 54 Query: 80 KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139 ++ LIS + + + + ++ G+ +L+ +P ++E V A Sbjct: 55 LSQLEWLISKLMARPMTGKQ--RTVHFLIMVGLYQLLYTR-IPPHAALAETVEGAVAIKR 111 Query: 140 GDEPKFINAVLDKVSRKEEI 159 IN VL + R++E Sbjct: 112 PQLKGLINGVLRQFQRQQEA 131 >gi|330002246|ref|ZP_08304257.1| ribosomal RNA small subunit methyltransferase B [Klebsiella sp. MS 92-3] gi|328537385|gb|EGF63634.1| ribosomal RNA small subunit methyltransferase B [Klebsiella sp. MS 92-3] Length = 431 Score = 44.7 bits (105), Expect = 0.004, Method: Composition-based stats. Identities = 25/140 (17%), Positives = 52/140 (37%), Gaps = 16/140 (11%) Query: 20 RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79 R A QA+ Q+ G S + ++ ++ D + + GV+ Sbjct: 8 RSLAAQAIEQVVEKGQSLSNVL-------------PPLQQKVSDKDKALLQELCFGVLRT 54 Query: 80 KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139 ++ LIS + + + + ++ G+ +L+ +P ++E V A Sbjct: 55 LSQLEWLISKLMARPMTGKQ--RTVHFLIMVGLYQLLYTR-IPPHAALAETVEGAVAIKR 111 Query: 140 GDEPKFINAVLDKVSRKEEI 159 IN VL + R++E Sbjct: 112 PQLKGLINGVLRQFQRQQEA 131 >gi|306841594|ref|ZP_07474291.1| Sun [Brucella sp. BO2] gi|306288340|gb|EFM59703.1| Sun [Brucella sp. BO2] Length = 464 Score = 44.7 bits (105), Expect = 0.004, Method: Composition-based stats. Identities = 18/97 (18%), Positives = 37/97 (38%), Gaps = 8/97 (8%) Query: 65 DLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVE 124 D R I+ + + I+ I+ L + L +L V ++ +P Sbjct: 68 DRALVRAILGSALRNRGSIERAINKRLDR--PLPENAVALKHLLHVAVAQIFY-LDLPDH 124 Query: 125 VIISEYVCIAHDFFYGDEPKF---INAVLDKVSRKEE 158 + V A+ K+ +NA+L +++R +E Sbjct: 125 SAVDLAVEAAN--SDPRNRKYAGLVNALLRRLARNKE 159 >gi|299133157|ref|ZP_07026352.1| Fmu (Sun) domain protein [Afipia sp. 1NLS2] gi|298593294|gb|EFI53494.1| Fmu (Sun) domain protein [Afipia sp. 1NLS2] Length = 446 Score = 44.7 bits (105), Expect = 0.004, Method: Composition-based stats. Identities = 24/129 (18%), Positives = 44/129 (34%), Gaps = 14/129 (10%) Query: 37 TTEIISEYETYRFCADTELDVESVYL------HVDLEWFRVIIHGVMDRKQHIDLLISSC 90 +II R D +L+ + + D R ++ V+ R + L+S Sbjct: 21 AADIIDGVLHKRRTLDDQLEGPAAHPVLKTLSDRDRALMRRLVATVLRRLGTLGHLLSRL 80 Query: 91 LTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKF---IN 147 L S L G +++ VP + V + K+ +N Sbjct: 81 LDRGIPSD--APRAQSALLIGAAQILWM-DVPDHAAVDLSVRLVQA--DRRAAKYAGLVN 135 Query: 148 AVLDKVSRK 156 AVL + +R+ Sbjct: 136 AVLRRCARE 144 >gi|242398901|ref|YP_002994325.1| TRNA/rRNA cytosine-C5-methylase, NOL1/NOP2/Sun family, fused to N- terminal NusB regulator domain [Thermococcus sibiricus MM 739] gi|242265294|gb|ACS89976.1| TRNA/rRNA cytosine-C5-methylase, NOL1/NOP2/Sun family, fused to N- terminal NusB regulator domain [Thermococcus sibiricus MM 739] Length = 450 Score = 44.7 bits (105), Expect = 0.004, Method: Composition-based stats. Identities = 30/119 (25%), Positives = 46/119 (38%), Gaps = 7/119 (5%) Query: 37 TTEIISEYETYRFCADTELDVE-SVYLHVDLEWFRVIIHGVM----DRKQHIDLLISSCL 91 +I+S E + L+ D E R + H + K+ ID I + + Sbjct: 13 IADILSLIEERELSSKNALERTFKRVRGKDRERARGLAHAYIFEIEKWKRKID-FIGNSV 71 Query: 92 TEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVL 150 + LD L ++LR G+ E+ VP + V D + KFINAVL Sbjct: 72 LKGIKIEELDPYLANLLRIGIFEMKFKGVVP-AIATDSIVRAVKDKYDLSRAKFINAVL 129 >gi|254719803|ref|ZP_05181614.1| Sun [Brucella sp. 83/13] gi|265984821|ref|ZP_06097556.1| fmu domain-containing protein [Brucella sp. 83/13] gi|306839499|ref|ZP_07472307.1| Sun [Brucella sp. NF 2653] gi|264663413|gb|EEZ33674.1| fmu domain-containing protein [Brucella sp. 83/13] gi|306405444|gb|EFM61715.1| Sun [Brucella sp. NF 2653] Length = 464 Score = 44.7 bits (105), Expect = 0.004, Method: Composition-based stats. Identities = 18/97 (18%), Positives = 37/97 (38%), Gaps = 8/97 (8%) Query: 65 DLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVE 124 D R I+ + + I+ I+ L + L +L V ++ +P Sbjct: 68 DRALVRAILGSALRNRGSIERAINKRLDR--PLPENAVALKHLLHVAVAQIFY-LDLPDH 124 Query: 125 VIISEYVCIAHDFFYGDEPKF---INAVLDKVSRKEE 158 + V A+ K+ +NA+L +++R +E Sbjct: 125 SAVDLAVEAAN--SDPRNRKYAGLVNALLRRLARNKE 159 >gi|261400037|ref|ZP_05986162.1| ribosomal RNA small subunit methyltransferase B [Neisseria lactamica ATCC 23970] gi|269210259|gb|EEZ76714.1| ribosomal RNA small subunit methyltransferase B [Neisseria lactamica ATCC 23970] Length = 419 Score = 44.7 bits (105), Expect = 0.004, Method: Composition-based stats. Identities = 25/126 (19%), Positives = 50/126 (39%), Gaps = 17/126 (13%) Query: 34 GCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTE 93 G + +++++ T A +L + D+ + G + +++ L + Sbjct: 20 GRNLQDVLAQIRT----AHPDLTAQENGALQDIAY------GCQRYLGSLKHILAQMLKK 69 Query: 94 KWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVC-IAHDFFYGDEPKFINAVLDK 152 + L S+L A + +L + P V+ +E V IA G F NAVL + Sbjct: 70 --PIG--NPQLESLLLAALYQLHYTRNAPHAVV-NEAVESIAKI-GRGQYRSFANAVLRR 123 Query: 153 VSRKEE 158 R+ + Sbjct: 124 FLRERD 129 >gi|332969155|gb|EGK08187.1| ribosomal RNA small subunit methyltransferase B [Kingella kingae ATCC 23330] Length = 418 Score = 44.7 bits (105), Expect = 0.004, Method: Composition-based stats. Identities = 17/101 (16%), Positives = 36/101 (35%), Gaps = 5/101 (4%) Query: 58 ESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIE 117 D + + +G + ++ L + + +L + L + +L Sbjct: 34 NPDLTAQDKGMLQDLAYGCQRFLGSLRYMLGKLLNK--PLD--NPLLEAHLLVAMYQLNH 89 Query: 118 CHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEE 158 + P V+ +E V G F NA+L + R++E Sbjct: 90 TKNAPHAVV-NEAVEYIGKMGRGQYRSFANAILRRFQREQE 129 >gi|323164853|gb|EFZ50644.1| ribosomal RNA small subunit methyltransferase B [Shigella sonnei 53G] Length = 454 Score = 44.7 bits (105), Expect = 0.004, Method: Composition-based stats. Identities = 25/145 (17%), Positives = 53/145 (36%), Gaps = 16/145 (11%) Query: 14 HRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVII 73 ++ R A QA+ Q+ G S + I+ ++ D + + Sbjct: 27 EKQRNLRSMAAQAVEQVVEQGQSLSNIL-------------PPLQQKVSDKDKALLQELC 73 Query: 74 HGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCI 133 GV+ +D LI+ + + + + ++ G+ +L+ +P ++E V Sbjct: 74 FGVLRTLSQLDWLINKLMARPMTGKQ--RTVHYLIMVGLYQLLYTR-IPPHAALAETVEG 130 Query: 134 AHDFFYGDEPKFINAVLDKVSRKEE 158 A IN VL + ++E Sbjct: 131 AIAIKRPQLKGLINGVLRQFQHQQE 155 >gi|262166812|ref|ZP_06034549.1| ribosomal RNA small subunit methyltransferase B [Vibrio mimicus VM223] gi|262026528|gb|EEY45196.1| ribosomal RNA small subunit methyltransferase B [Vibrio mimicus VM223] Length = 426 Score = 44.7 bits (105), Expect = 0.004, Method: Composition-based stats. Identities = 32/139 (23%), Positives = 50/139 (35%), Gaps = 16/139 (11%) Query: 20 RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79 R AA ALYQ+ +G S + + + D + I +GV+ + Sbjct: 4 RAAAASALYQVVDLGQSLSNAL-------------PTAQQQIRPRDHALLQEICYGVLRQ 50 Query: 80 KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139 + IS L EK + ++ G+ +L +P + E V A D Sbjct: 51 LPRL-ESISQALMEK-PLKGKQRVFHFLILVGLYQLSFMR-IPAHAAVGETVEGAQDLKG 107 Query: 140 GDEPKFINAVLDKVSRKEE 158 INAVL R +E Sbjct: 108 PRLRGLINAVLRNYQRDQE 126 >gi|256830606|ref|YP_003159334.1| sun protein [Desulfomicrobium baculatum DSM 4028] gi|256579782|gb|ACU90918.1| sun protein [Desulfomicrobium baculatum DSM 4028] Length = 424 Score = 44.7 bits (105), Expect = 0.004, Method: Composition-based stats. Identities = 24/131 (18%), Positives = 43/131 (32%), Gaps = 15/131 (11%) Query: 19 ARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMD 78 AR A+ L + + + D L+ V D + +G + Sbjct: 6 ARRLALDIL----------RRTLDHKQDLQAAVDEVLNP--VQAGPDKGLATELAYGYLR 53 Query: 79 RKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFF 138 + ID L+S L + + I+ IL + EL+ +P + V + + Sbjct: 54 MRGRIDFLLSQLLK---NPVQTSPIMKRILGVAMYELLFLSRIPDYATLDWAVTLVRERL 110 Query: 139 YGDEPKFINAV 149 K N V Sbjct: 111 DQTMGKVANGV 121 >gi|114767262|ref|ZP_01446112.1| ribosomal RNA small subunit methyltransferase B, putative [Pelagibaca bermudensis HTCC2601] gi|114540615|gb|EAU43687.1| ribosomal RNA small subunit methyltransferase B, putative [Roseovarius sp. HTCC2601] Length = 420 Score = 44.7 bits (105), Expect = 0.004, Method: Composition-based stats. Identities = 21/103 (20%), Positives = 37/103 (35%), Gaps = 8/103 (7%) Query: 59 SVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIEC 118 D + + V+ + D L+ L + + ++LR G EL Sbjct: 35 EAMPAPDRAAAQRMAQEVLRNLERCDRLLKPHLRKSPPL-----FVRNVLRLGAWEL-AT 88 Query: 119 HSVPVEVIISEYVCI-AHDFFYGDEPKFINAVLDKVSRKEEIK 160 V+ ++ V I A D +NAVL K++ + K Sbjct: 89 GGAAHGVV-NDCVQIVAGDRKTQSMKGLVNAVLRKLTEEAPAK 130 >gi|308047743|ref|YP_003911309.1| 16S rRNA m(5)C-967 methyltransferase [Ferrimonas balearica DSM 9799] gi|307629933|gb|ADN74235.1| 16S rRNA m(5)C-967 methyltransferase [Ferrimonas balearica DSM 9799] Length = 441 Score = 44.7 bits (105), Expect = 0.004, Method: Composition-based stats. Identities = 22/105 (20%), Positives = 41/105 (39%), Gaps = 3/105 (2%) Query: 65 DLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVE 124 D I +GVM + +D + CL + S I+ +L AG+ +L V Sbjct: 40 DKALLAEIAYGVMRQLPQLDTQLRRCLQK--PLSGKKRIIHGLLLAGLYQLKHTR-VGSH 96 Query: 125 VIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRSGCVSAIT 169 +++E V + +N VL + R + ++ A + Sbjct: 97 AVVAESVNACREIGAPGMTGLVNGVLRALDRDMDALQAEQFDAPS 141 >gi|306844795|ref|ZP_07477380.1| Sun [Brucella sp. BO1] gi|306274967|gb|EFM56737.1| Sun [Brucella sp. BO1] Length = 465 Score = 44.7 bits (105), Expect = 0.004, Method: Composition-based stats. Identities = 18/97 (18%), Positives = 37/97 (38%), Gaps = 8/97 (8%) Query: 65 DLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVE 124 D R I+ + + I+ I+ L + L +L V ++ +P Sbjct: 69 DRALVRAILGSALRNRGSIERAINKRLDR--PLPENAVALKHLLHVAVAQIFY-LDLPDH 125 Query: 125 VIISEYVCIAHDFFYGDEPKF---INAVLDKVSRKEE 158 + V A+ K+ +NA+L +++R +E Sbjct: 126 SAVDLAVEAAN--SDPRNRKYAGLVNALLRRLARNKE 160 >gi|152972197|ref|YP_001337343.1| 16S rRNA methyltransferase B [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|224493256|sp|A6TEU2|RSMB_KLEP7 RecName: Full=Ribosomal RNA small subunit methyltransferase B; AltName: Full=16S rRNA m5C967 methyltransferase; AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase rsmB gi|150957046|gb|ABR79076.1| 16S rRNA m5C967 methyltransferase [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] Length = 431 Score = 44.7 bits (105), Expect = 0.004, Method: Composition-based stats. Identities = 25/140 (17%), Positives = 52/140 (37%), Gaps = 16/140 (11%) Query: 20 RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79 R A QA+ Q+ G S + ++ ++ D + + GV+ Sbjct: 8 RSLAAQAIEQVVEKGQSLSNVL-------------PPLQQKVSDKDKALLQELCFGVLRT 54 Query: 80 KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139 ++ LIS + + + + ++ G+ +L+ +P ++E V A Sbjct: 55 LSQLEWLISKLMARPMTGKQ--RTVHFLIMVGLYQLLYTR-IPPHAALAETVEGAVAIKR 111 Query: 140 GDEPKFINAVLDKVSRKEEI 159 IN VL + R++E Sbjct: 112 PQLKGLINGVLRQFQRQQEA 131 >gi|296315160|ref|ZP_06865101.1| ribosomal RNA small subunit methyltransferase B [Neisseria polysaccharea ATCC 43768] gi|296837969|gb|EFH21907.1| ribosomal RNA small subunit methyltransferase B [Neisseria polysaccharea ATCC 43768] Length = 419 Score = 44.7 bits (105), Expect = 0.005, Method: Composition-based stats. Identities = 25/126 (19%), Positives = 50/126 (39%), Gaps = 17/126 (13%) Query: 34 GCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTE 93 G + +++++ T A +L + D+ + G + +++ L + Sbjct: 20 GRNLQDVLAQIRT----AHPDLTAQENGALQDIAY------GCQRYLGSLKHMLAQMLKK 69 Query: 94 KWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVC-IAHDFFYGDEPKFINAVLDK 152 + L S+L A + +L + P V+ +E V IA G F NAVL + Sbjct: 70 --PIG--NPQLESLLLAALYQLHYTRNAPHAVV-NEAVESIAKI-GRGQYRSFANAVLRR 123 Query: 153 VSRKEE 158 R+ + Sbjct: 124 FLRERD 129 >gi|262402050|ref|ZP_06078614.1| ribosomal RNA small subunit methyltransferase B [Vibrio sp. RC586] gi|262351696|gb|EEZ00828.1| ribosomal RNA small subunit methyltransferase B [Vibrio sp. RC586] Length = 426 Score = 44.7 bits (105), Expect = 0.005, Method: Composition-based stats. Identities = 31/139 (22%), Positives = 51/139 (36%), Gaps = 16/139 (11%) Query: 20 RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79 R AA ALYQ+ +G S + + + D + I +GV+ + Sbjct: 4 RAAAASALYQVVDLGQSLSNAL-------------PTAQQQIRPRDHALLQEICYGVLRQ 50 Query: 80 KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139 + IS L EK + ++ G+ ++ +P + E V A D Sbjct: 51 LPRL-ESISQALMEK-PLKGKQRVFHFLILVGLYQISFMR-IPAHAAVGETVEGAQDLKG 107 Query: 140 GDEPKFINAVLDKVSRKEE 158 INAVL R++E Sbjct: 108 PRLRGLINAVLRNYQREQE 126 >gi|225853258|ref|YP_002733491.1| Fmu domain-containing protein, Sun [Brucella melitensis ATCC 23457] gi|256114379|ref|ZP_05455112.1| Fmu domain protein, Sun [Brucella melitensis bv. 3 str. Ether] gi|256263253|ref|ZP_05465785.1| NOL1/NOP2/sun family protein [Brucella melitensis bv. 2 str. 63/9] gi|265995679|ref|ZP_06108236.1| fmu domain-containing protein [Brucella melitensis bv. 3 str. Ether] gi|225641623|gb|ACO01537.1| Fmu domain protein, Sun [Brucella melitensis ATCC 23457] gi|262766963|gb|EEZ12581.1| fmu domain-containing protein [Brucella melitensis bv. 3 str. Ether] gi|263093217|gb|EEZ17314.1| NOL1/NOP2/sun family protein [Brucella melitensis bv. 2 str. 63/9] gi|326409818|gb|ADZ66883.1| Fmu domain-containing protein, Sun [Brucella melitensis M28] gi|326539536|gb|ADZ87751.1| Fmu domain protein, Sun [Brucella melitensis M5-90] Length = 465 Score = 44.7 bits (105), Expect = 0.005, Method: Composition-based stats. Identities = 28/162 (17%), Positives = 54/162 (33%), Gaps = 23/162 (14%) Query: 2 TIQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVY 61 T ++ DL+ ARL A + L +I + + D Sbjct: 17 TNSNSAADLRPGL---AARLCAARLL----------GAVIEKNTSLDGLTDNAHGHPQYL 63 Query: 62 L--HVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECH 119 D R I+ + + I+ I+ L + L +L V ++ Sbjct: 64 ALEPRDRALVRAILGSALHNRGSIERAINKRLDR--PLPENAVALKHLLHVAVAQIFY-L 120 Query: 120 SVPVEVIISEYVCIAHDFFYGDEPKF---INAVLDKVSRKEE 158 +P + V A+ K+ +NA+L +++R +E Sbjct: 121 DLPDHSAVDLAVEAAN--SDPRNRKYAGLVNALLRRLARNKE 160 >gi|303245831|ref|ZP_07332113.1| Fmu (Sun) domain protein [Desulfovibrio fructosovorans JJ] gi|302492614|gb|EFL52482.1| Fmu (Sun) domain protein [Desulfovibrio fructosovorans JJ] Length = 451 Score = 44.7 bits (105), Expect = 0.005, Method: Composition-based stats. Identities = 15/96 (15%), Positives = 30/96 (31%), Gaps = 3/96 (3%) Query: 59 SVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIEC 118 D +++G + + + L + L + + IL E++ C Sbjct: 51 PGLDPRDRGLATELVYGYLRLRGRMAFLCARFLKR---PDAVPAPVRRILELAAYEILFC 107 Query: 119 HSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVS 154 VP + V NAVL +++ Sbjct: 108 SKVPAYASVDWAVSAVRAKAGKGLSGMANAVLRRIA 143 >gi|163744097|ref|ZP_02151463.1| ribosomal RNA small subunit methyltransferase B, putative [Phaeobacter gallaeciensis 2.10] gi|161382644|gb|EDQ07047.1| ribosomal RNA small subunit methyltransferase B, putative [Phaeobacter gallaeciensis 2.10] Length = 443 Score = 44.3 bits (104), Expect = 0.005, Method: Composition-based stats. Identities = 26/150 (17%), Positives = 54/150 (36%), Gaps = 21/150 (14%) Query: 8 KDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLE 67 ++ ++S+ AR A+ L +++ E + C + Sbjct: 19 QEPRMSNA-TQARRRAIHLL----------DQVLGEGKLLSEC--YAAGALDKLPAEERA 65 Query: 68 WFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVII 127 + + + + D ++ L + + + LR G +EL C ++ Sbjct: 66 RTQRLATDTLRNLERADRILQKHLKKATPL-----TVHNALRIGTVEL--CQGGAAHGVV 118 Query: 128 SEYVCI-AHDFFYGDEPKFINAVLDKVSRK 156 +E V I A +G +NAVL KV+ + Sbjct: 119 NEMVDIIARHRRHGKLKGLVNAVLRKVAEQ 148 >gi|256045414|ref|ZP_05448306.1| Fmu domain protein, Sun [Brucella melitensis bv. 1 str. Rev.1] gi|260565697|ref|ZP_05836180.1| conserved hypothetical protein [Brucella melitensis bv. 1 str. 16M] gi|265991841|ref|ZP_06104398.1| fmu domain-containing protein [Brucella melitensis bv. 1 str. Rev.1] gi|260151070|gb|EEW86165.1| conserved hypothetical protein [Brucella melitensis bv. 1 str. 16M] gi|263002797|gb|EEZ15200.1| fmu domain-containing protein [Brucella melitensis bv. 1 str. Rev.1] Length = 465 Score = 44.3 bits (104), Expect = 0.005, Method: Composition-based stats. Identities = 28/162 (17%), Positives = 54/162 (33%), Gaps = 23/162 (14%) Query: 2 TIQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVY 61 T ++ DL+ ARL A + L +I + + D Sbjct: 17 TNSNSAADLRPGL---AARLCAARLL----------GAVIEKNTSLDGLTDNAHGHPQYL 63 Query: 62 L--HVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECH 119 D R I+ + + I+ I+ L + L +L V ++ Sbjct: 64 ALEPRDRALVRAILGSALHNRGSIERAINKRLDR--PLPENAVALKHLLHVAVAQIFY-L 120 Query: 120 SVPVEVIISEYVCIAHDFFYGDEPKF---INAVLDKVSRKEE 158 +P + V A+ K+ +NA+L +++R +E Sbjct: 121 DLPDHSAVDLAVEAAN--SDPRNRKYAGLVNALLRRLARNKE 160 >gi|319639525|ref|ZP_07994272.1| SUN protein [Neisseria mucosa C102] gi|317399096|gb|EFV79770.1| SUN protein [Neisseria mucosa C102] Length = 417 Score = 44.3 bits (104), Expect = 0.005, Method: Composition-based stats. Identities = 24/126 (19%), Positives = 48/126 (38%), Gaps = 17/126 (13%) Query: 34 GCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTE 93 G + ++++E A +L + D+ + G + ++ L + Sbjct: 18 GRNLQDVLAEIR----VAHPQLTAQENGALQDIAY------GCQRYLGSLKHMLGQMLKK 67 Query: 94 KWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVC-IAHDFFYGDEPKFINAVLDK 152 + L S+L A + +L + P V+ +E V IA G F NA+L + Sbjct: 68 --PID--NPQLESLLLAAMYQLHYTRNAPHAVV-NEAVESIAKI-GRGQFRSFANAILRR 121 Query: 153 VSRKEE 158 R+ + Sbjct: 122 FLRERD 127 >gi|298370615|ref|ZP_06981930.1| ribosomal RNA small subunit methyltransferase B [Neisseria sp. oral taxon 014 str. F0314] gi|298281225|gb|EFI22715.1| ribosomal RNA small subunit methyltransferase B [Neisseria sp. oral taxon 014 str. F0314] Length = 425 Score = 44.3 bits (104), Expect = 0.005, Method: Composition-based stats. Identities = 24/126 (19%), Positives = 48/126 (38%), Gaps = 17/126 (13%) Query: 34 GCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTE 93 G + ++++ A EL + D+ + G + +++ L + Sbjct: 18 GRNLQDVLAAIRA----AHPELTAQENGALQDIAY------GCQRYLGSLKHMLAQMLKK 67 Query: 94 KWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVC-IAHDFFYGDEPKFINAVLDK 152 + L S+L A + +L + P V+ +E V IA G F NA+L + Sbjct: 68 --PID--NPQLESLLLAAMYQLHYTRNAPHAVV-NEAVESIAKI-GRGQFRSFANAILRR 121 Query: 153 VSRKEE 158 R+ + Sbjct: 122 FLRERQ 127 >gi|325131147|gb|EGC53868.1| ribosomal RNA small subunit methyltransferase B [Neisseria meningitidis OX99.30304] gi|325137171|gb|EGC59766.1| ribosomal RNA small subunit methyltransferase B [Neisseria meningitidis M0579] gi|325203053|gb|ADY98507.1| ribosomal RNA small subunit methyltransferase B [Neisseria meningitidis M01-240149] gi|325207149|gb|ADZ02601.1| ribosomal RNA small subunit methyltransferase B [Neisseria meningitidis NZ-05/33] Length = 419 Score = 44.3 bits (104), Expect = 0.005, Method: Composition-based stats. Identities = 25/126 (19%), Positives = 50/126 (39%), Gaps = 17/126 (13%) Query: 34 GCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTE 93 G + +++++ T A +L + D+ + G + +++ L + Sbjct: 20 GRNLQDVLAQIRT----AHPDLMAQENGALQDIAY------GCQRYLGSLKHMLAQMLKK 69 Query: 94 KWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVC-IAHDFFYGDEPKFINAVLDK 152 + L S+L A + +L + P V+ +E V IA G F NAVL + Sbjct: 70 --PIG--NPQLESLLLAALYQLHYTRNAPHAVV-NEAVESIAKI-GRGQYRSFANAVLRR 123 Query: 153 VSRKEE 158 R+ + Sbjct: 124 FLRERD 129 >gi|260168015|ref|ZP_05754826.1| sun protein [Brucella sp. F5/99] gi|261757460|ref|ZP_06001169.1| RNA methyltransferase- sun protein [Brucella sp. F5/99] gi|261737444|gb|EEY25440.1| RNA methyltransferase- sun protein [Brucella sp. F5/99] Length = 465 Score = 44.3 bits (104), Expect = 0.005, Method: Composition-based stats. Identities = 28/162 (17%), Positives = 54/162 (33%), Gaps = 23/162 (14%) Query: 2 TIQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVY 61 T ++ DL+ ARL A + L +I + + D Sbjct: 17 TNSNSAADLRPGL---AARLCAARLL----------GAVIEKNTSLDGLTDNAHGHPQYL 63 Query: 62 L--HVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECH 119 D R I+ + + I+ I+ L + L +L V ++ Sbjct: 64 ALEPRDRALVRAILGFALRNRGSIERAINKRLDR--PLPENAVALKHLLHVAVAQIFY-L 120 Query: 120 SVPVEVIISEYVCIAHDFFYGDEPKF---INAVLDKVSRKEE 158 +P + V A+ K+ +NA+L +++R +E Sbjct: 121 DLPDHSAVDLAVEAAN--SDPRNRKYAGLVNALLRRLARNKE 160 >gi|15676040|ref|NP_273170.1| 16S RNA methyltransferase [Neisseria meningitidis MC58] gi|7225328|gb|AAF40571.1| 16S RNA methyltransferase [Neisseria meningitidis MC58] gi|316985958|gb|EFV64897.1| ribosomal RNA small subunit methyltransferase B [Neisseria meningitidis H44/76] gi|325141257|gb|EGC63756.1| ribosomal RNA small subunit methyltransferase B [Neisseria meningitidis CU385] gi|325199326|gb|ADY94781.1| ribosomal RNA small subunit methyltransferase B [Neisseria meningitidis H44/76] Length = 419 Score = 44.3 bits (104), Expect = 0.006, Method: Composition-based stats. Identities = 25/126 (19%), Positives = 50/126 (39%), Gaps = 17/126 (13%) Query: 34 GCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTE 93 G + +++++ T A +L + D+ + G + +++ L + Sbjct: 20 GRNLQDVLAQIRT----AHPDLMAQENGALQDIAY------GCQRYLGSLKHMLAQMLKK 69 Query: 94 KWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVC-IAHDFFYGDEPKFINAVLDK 152 + L S+L A + +L + P V+ +E V IA G F NAVL + Sbjct: 70 --PIG--NPQLESLLLAALYQLHYTRNAPHAVV-NEAVESIAKI-GRGQYRSFANAVLRR 123 Query: 153 VSRKEE 158 R+ + Sbjct: 124 FLRERD 129 >gi|159185402|ref|NP_355752.2| Sun protein [Agrobacterium tumefaciens str. C58] gi|159140651|gb|AAK88537.2| Sun protein [Agrobacterium tumefaciens str. C58] Length = 461 Score = 44.3 bits (104), Expect = 0.006, Method: Composition-based stats. Identities = 33/175 (18%), Positives = 63/175 (36%), Gaps = 35/175 (20%) Query: 8 KDLKLSHRRG--------------IARLAAVQALYQIDIIGCSTTEIISEYETYRFCADT 53 + K +H RG AR+AA + L ++ + + D+ Sbjct: 13 RKPKPAHARGREDGPSSFEDKPGLAARIAATRIL----------AAVLEKKTSMDGMLDS 62 Query: 54 EL--DVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAG 111 E V D R +++ + I+ +S L + L +L G Sbjct: 63 ENGNPVYRALSLADRALVRAVVNSALRHLPRIETALSMLLDG--PLPQGARSLHHVLVVG 120 Query: 112 VLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFI---NAVLDKVSRKE-EIKRS 162 +++ VP + V AH +F+ NAVL ++ R++ EI+++ Sbjct: 121 AAQMLY-LDVPDHSAVDLAVEQAHR--DPRNRRFVKLVNAVLRRLGREKAEIEKA 172 >gi|195970119|ref|NP_387430.2| putative sun protein [Sinorhizobium meliloti 1021] gi|307302539|ref|ZP_07582296.1| Fmu (Sun) domain protein [Sinorhizobium meliloti BL225C] gi|187904238|emb|CAC47903.2| Hypothetical Sun protein [Sinorhizobium meliloti 1021] gi|306903209|gb|EFN33799.1| Fmu (Sun) domain protein [Sinorhizobium meliloti BL225C] Length = 470 Score = 44.3 bits (104), Expect = 0.006, Method: Composition-based stats. Identities = 26/133 (19%), Positives = 45/133 (33%), Gaps = 14/133 (10%) Query: 35 CSTTEIISEYETYRFCADTELDVESVYL------HVDLEWFRVIIHGVMDRKQHIDLLIS 88 + +I++ + D LD E D R I++ + I I Sbjct: 41 QAAAKILAAVVDRKTPLDGMLDPERGNPAYRELSEADRALVRAILNSALRHLPRIRAAID 100 Query: 89 SCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKF--- 145 S L L +L +++ VP + V A +F Sbjct: 101 SLLQT--PLPEGARALEHVLTVAATQILY-LDVPDHSAVDLAVEQAQ--SDPRNRRFASL 155 Query: 146 INAVLDKVSRKEE 158 +NAVL ++SR++E Sbjct: 156 VNAVLRRLSREKE 168 >gi|125718645|ref|YP_001035778.1| rRNA methyltransferase RsmB [Streptococcus sanguinis SK36] gi|125498562|gb|ABN45228.1| RRNA methyltransferase RsmB, putative [Streptococcus sanguinis SK36] Length = 355 Score = 44.3 bits (104), Expect = 0.006, Method: Composition-based stats. Identities = 11/47 (23%), Positives = 22/47 (46%), Gaps = 1/47 (2%) Query: 110 AGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRK 156 + +++ +P + E + IA G KF NA+L ++ R+ Sbjct: 2 LSLYQMLYLDKIPQHAAVHEAIEIAKIRKRG-SEKFANALLRRIERE 47 >gi|114775554|ref|ZP_01451122.1| Sun protein [Mariprofundus ferrooxydans PV-1] gi|114553665|gb|EAU56046.1| Sun protein [Mariprofundus ferrooxydans PV-1] Length = 404 Score = 44.3 bits (104), Expect = 0.006, Method: Composition-based stats. Identities = 23/133 (17%), Positives = 43/133 (32%), Gaps = 9/133 (6%) Query: 30 IDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISS 89 + + + + R +++GV+ R ++ S Sbjct: 1 MQVRKAAIESLADILVRQRKAEQAMERYGVRLDARGRGLLHELVYGVLRRFYSLEADYSR 60 Query: 90 CL-TEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINA 148 ++ +R+ L G +L VP +SE V A F+NA Sbjct: 61 FCRSKPDDTARMA------LLIGTYQLRYMR-VPAHAALSETVA-AVMQSNPKAGGFVNA 112 Query: 149 VLDKVSRKEEIKR 161 VL +VS E ++ Sbjct: 113 VLRRVSEHEPPQK 125 >gi|153830135|ref|ZP_01982802.1| sun protein [Vibrio cholerae 623-39] gi|254225568|ref|ZP_04919177.1| sun protein [Vibrio cholerae V51] gi|254291095|ref|ZP_04961892.1| sun protein [Vibrio cholerae AM-19226] gi|125621888|gb|EAZ50213.1| sun protein [Vibrio cholerae V51] gi|148874399|gb|EDL72534.1| sun protein [Vibrio cholerae 623-39] gi|150422940|gb|EDN14890.1| sun protein [Vibrio cholerae AM-19226] Length = 434 Score = 44.3 bits (104), Expect = 0.006, Method: Composition-based stats. Identities = 32/139 (23%), Positives = 50/139 (35%), Gaps = 16/139 (11%) Query: 20 RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79 R AA ALYQ+ +G S + + + D + I +GV+ + Sbjct: 12 RAAAASALYQVVDLGHSLSNAL-------------PAAQQQIRPRDHALLQEICYGVLRQ 58 Query: 80 KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139 + IS L EK + ++ G+ +L +P + E V A D Sbjct: 59 LPRL-ESISQALMEK-PLKGKQRVFHFLILVGLYQLSFMR-IPAHAAVGETVEGAQDLKG 115 Query: 140 GDEPKFINAVLDKVSRKEE 158 INAVL R +E Sbjct: 116 PRLRGLINAVLRNYQRDQE 134 >gi|18977637|ref|NP_578994.1| nol1-nop2-sun family nucleolar protein II [Pyrococcus furiosus DSM 3638] gi|18893359|gb|AAL81389.1| putative nucleolar protein II (nol1-nop2-sun family) [Pyrococcus furiosus DSM 3638] Length = 450 Score = 44.3 bits (104), Expect = 0.006, Method: Composition-based stats. Identities = 22/83 (26%), Positives = 36/83 (43%), Gaps = 2/83 (2%) Query: 73 IHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVC 132 + + + ID +I+S L LD L ++LR GV E+ P + V Sbjct: 54 VFEIEKWRAKIDFIINSVL-RGSKVEDLDPYLANLLRIGVFEMKFKKINP-AIATDSIVR 111 Query: 133 IAHDFFYGDEPKFINAVLDKVSR 155 + + F KF NA+L +V + Sbjct: 112 VVKEKFDLTRAKFANAILREVEK 134 >gi|307316130|ref|ZP_07595574.1| Fmu (Sun) domain protein [Sinorhizobium meliloti AK83] gi|306897970|gb|EFN28712.1| Fmu (Sun) domain protein [Sinorhizobium meliloti AK83] Length = 470 Score = 44.3 bits (104), Expect = 0.006, Method: Composition-based stats. Identities = 26/133 (19%), Positives = 45/133 (33%), Gaps = 14/133 (10%) Query: 35 CSTTEIISEYETYRFCADTELDVESVYL------HVDLEWFRVIIHGVMDRKQHIDLLIS 88 + +I++ + D LD E D R I++ + I I Sbjct: 41 QAAAKILAAVVDRKTPLDGMLDPERGNPAYRELSEADRALVRAILNSALRHLPRIRAAID 100 Query: 89 SCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKF--- 145 S L L +L +++ VP + V A +F Sbjct: 101 SLLQT--PLPEGARALEHVLTVAATQILY-LDVPDHSAVDLAVEQAQ--SDPRNRRFASL 155 Query: 146 INAVLDKVSRKEE 158 +NAVL ++SR++E Sbjct: 156 VNAVLRRLSREKE 168 >gi|313667408|ref|YP_004047692.1| SUN-family protein [Neisseria lactamica ST-640] gi|313004870|emb|CBN86296.1| SUN-family protein [Neisseria lactamica 020-06] Length = 419 Score = 44.3 bits (104), Expect = 0.006, Method: Composition-based stats. Identities = 23/119 (19%), Positives = 45/119 (37%), Gaps = 13/119 (10%) Query: 41 ISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRL 100 + + + A +L + D+ + G + +++ L + Sbjct: 23 LQDVLAHIRAAHPDLTAQENGALQDIAY------GCQRYLGSLKHMLAQMLKK--PIG-- 72 Query: 101 DMILCSILRAGVLELIECHSVPVEVIISEYVC-IAHDFFYGDEPKFINAVLDKVSRKEE 158 + L S+L A + +L + P V+ +E V IA G F NAVL + R+ + Sbjct: 73 NPQLESLLLAALYQLHYTRNAPHAVV-NEAVESIAKI-GRGQYRSFANAVLRRFLRERD 129 >gi|83642941|ref|YP_431376.1| sun protein [Hahella chejuensis KCTC 2396] gi|83630984|gb|ABC26951.1| sun protein [Hahella chejuensis KCTC 2396] Length = 447 Score = 44.3 bits (104), Expect = 0.006, Method: Composition-based stats. Identities = 25/151 (16%), Positives = 49/151 (32%), Gaps = 23/151 (15%) Query: 12 LSHRRGI-ARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFR 70 + R+ + AR AA + L + E R D + + Sbjct: 1 MKRRKTLSARAAAAKTL-------------RAVAEEGRSLTTAMAPALEQVEENDRSFLQ 47 Query: 71 VIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSI---LRAGVLELIECHSVPVEVII 127 + +G ++ + L + + I L +G+ +L P V I Sbjct: 48 ALCYGACRHYLTLEHWLGQLLRQP-----IKAKERDIHFLLLSGLHQLAFMDK-PAHVSI 101 Query: 128 SEYVCIAHDFFYGDEPKFINAVLDKVSRKEE 158 +E V + + K +N VL R+++ Sbjct: 102 NETVNVTKELNKLWATKLVNGVLRSFQRRKD 132 >gi|153212957|ref|ZP_01948551.1| sun protein [Vibrio cholerae 1587] gi|153826427|ref|ZP_01979094.1| sun protein [Vibrio cholerae MZO-2] gi|124116183|gb|EAY35003.1| sun protein [Vibrio cholerae 1587] gi|149739813|gb|EDM54008.1| sun protein [Vibrio cholerae MZO-2] Length = 434 Score = 44.3 bits (104), Expect = 0.006, Method: Composition-based stats. Identities = 32/139 (23%), Positives = 50/139 (35%), Gaps = 16/139 (11%) Query: 20 RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79 R AA ALYQ+ +G S + + + D + I +GV+ + Sbjct: 12 RAAAASALYQVVDLGHSLSNAL-------------PAAQQQIRPRDHALLQEICYGVLRQ 58 Query: 80 KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139 + IS L EK + ++ G+ +L +P + E V A D Sbjct: 59 LPRL-ESISQALMEK-PLKGKQRVFHFLILVGLYQLSFMR-IPAHAAVGETVEGAQDLKG 115 Query: 140 GDEPKFINAVLDKVSRKEE 158 INAVL R +E Sbjct: 116 PRLRGLINAVLRNYQRDQE 134 >gi|294675830|ref|YP_003576445.1| ribosomal RNA small subunit methyltransferase B [Rhodobacter capsulatus SB 1003] gi|294474650|gb|ADE84038.1| ribosomal RNA small subunit methyltransferase B-1 [Rhodobacter capsulatus SB 1003] Length = 421 Score = 44.3 bits (104), Expect = 0.006, Method: Composition-based stats. Identities = 21/113 (18%), Positives = 34/113 (30%), Gaps = 10/113 (8%) Query: 45 ETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMIL 104 R + + D + I + D ++ L + L Sbjct: 19 LQERLTLAEQAGELAALAPPDRARAQRIALATLRNLTRADAMLKPHLRKAPPPD-----L 73 Query: 105 CSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKF---INAVLDKVS 154 +LR G +E+ P V V +A F INAVL K++ Sbjct: 74 HVLLRLGTVEICALGEAPHGVT-DALVTLARS-GGQKTEGFAGLINAVLRKIA 124 >gi|261214774|ref|ZP_05929055.1| fmu domain-containing protein [Brucella abortus bv. 3 str. Tulya] gi|260916381|gb|EEX83242.1| fmu domain-containing protein [Brucella abortus bv. 3 str. Tulya] Length = 252 Score = 44.3 bits (104), Expect = 0.006, Method: Composition-based stats. Identities = 28/162 (17%), Positives = 54/162 (33%), Gaps = 23/162 (14%) Query: 2 TIQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVY 61 T ++ DL+ ARL A + L +I + + D Sbjct: 17 TNSNSAADLRPGL---AARLCAARLL----------GAVIEKNTSLDGLTDNAHGHPQYL 63 Query: 62 L--HVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECH 119 D R I+ + + I+ I+ L + L +L V ++ Sbjct: 64 ALEPRDRALVRAILGSALRNRGSIERAINKRLDR--PLPENAVALKHLLHVAVAQIFY-L 120 Query: 120 SVPVEVIISEYVCIAHDFFYGDEPKF---INAVLDKVSRKEE 158 +P + V A+ K+ +NA+L +++R +E Sbjct: 121 DLPDHSAVDLAVEAAN--SDPRNRKYAGLVNALLRRLARNKE 160 >gi|254672816|emb|CBA06959.1| Sun protein [Neisseria meningitidis alpha275] Length = 419 Score = 44.3 bits (104), Expect = 0.006, Method: Composition-based stats. Identities = 25/126 (19%), Positives = 50/126 (39%), Gaps = 17/126 (13%) Query: 34 GCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTE 93 G + +++++ T A +L + D+ + G + +++ L + Sbjct: 20 GRNLQDVLAQIRT----AHPDLMAQENGALQDIAY------GCQRYLGSLKHMLAQMLKK 69 Query: 94 KWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVC-IAHDFFYGDEPKFINAVLDK 152 + L S+L A + +L + P V+ +E V IA G F NAVL + Sbjct: 70 --PIG--NPQLESLLLAALYQLHYTRNAPHAVV-NEAVESIAKI-GRGQYRSFANAVLRR 123 Query: 153 VSRKEE 158 R+ + Sbjct: 124 FLRERD 129 >gi|194443414|ref|YP_002042660.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|224493264|sp|B4SUR0|RSMB_SALNS RecName: Full=Ribosomal RNA small subunit methyltransferase B; AltName: Full=16S rRNA m5C967 methyltransferase; AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase rsmB gi|194402077|gb|ACF62299.1| ribosomal RNA small subunit methyltransferase B [Salmonella enterica subsp. enterica serovar Newport str. SL254] Length = 429 Score = 44.3 bits (104), Expect = 0.006, Method: Composition-based stats. Identities = 20/130 (15%), Positives = 49/130 (37%), Gaps = 3/130 (2%) Query: 29 QIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLIS 88 Q ++ + + E + ++ ++ D + + GV+ ++ LI+ Sbjct: 4 QNNLRSLAAQAVEQVVEQGQSLSNVLPPLQQKVADKDKALLQELCFGVLRTLSQLEWLIN 63 Query: 89 SCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINA 148 ++ + + + ++ G +L+ VP ++E V A IN Sbjct: 64 KLMSRPMTGKQ--RTVHYLIMVGFYQLLYTR-VPPHAALAETVEGAVAIKRPQLKGLING 120 Query: 149 VLDKVSRKEE 158 VL + R++E Sbjct: 121 VLRQFQRQQE 130 >gi|262191295|ref|ZP_06049489.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholerae CT 5369-93] gi|262032833|gb|EEY51377.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholerae CT 5369-93] Length = 426 Score = 44.3 bits (104), Expect = 0.006, Method: Composition-based stats. Identities = 32/139 (23%), Positives = 50/139 (35%), Gaps = 16/139 (11%) Query: 20 RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79 R AA ALYQ+ +G S + + + D + I +GV+ + Sbjct: 4 RAAAASALYQVVDLGHSLSNAL-------------PAAQQQIRPRDHALLQEICYGVLRQ 50 Query: 80 KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139 + IS L EK + ++ G+ +L +P + E V A D Sbjct: 51 LPRL-ESISQALMEK-PLKGKQRVFHFLILVGLYQLSFMR-IPAHAAVGETVEGAQDLKG 107 Query: 140 GDEPKFINAVLDKVSRKEE 158 INAVL R +E Sbjct: 108 PRLRGLINAVLRNYQRDQE 126 >gi|75674355|ref|YP_316776.1| tRNA and rRNA cytosine-C5-methylase [Nitrobacter winogradskyi Nb-255] gi|74419225|gb|ABA03424.1| tRNA and rRNA cytosine-C5-methylase [Nitrobacter winogradskyi Nb-255] Length = 450 Score = 43.9 bits (103), Expect = 0.006, Method: Composition-based stats. Identities = 22/131 (16%), Positives = 45/131 (34%), Gaps = 14/131 (10%) Query: 37 TTEIISEYETYRFCADTELDVESVYL------HVDLEWFRVIIHGVMDRKQHIDLLISSC 90 +I+ R D +L+ + + D R ++ ++ R + L+S Sbjct: 21 AADILDGVLHKRRTLDEQLEGPTAHPGLKALADRDRALMRRLVATILRRLGTLGHLLSRL 80 Query: 91 LTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKF---IN 147 L S L G +++ VP + V + K+ +N Sbjct: 81 LDRGIPTD--APRAQSALLIGAAQILWM-DVPDHAAVDLSVRLVQ--SDRRAAKYAGLVN 135 Query: 148 AVLDKVSRKEE 158 AVL + +R+ + Sbjct: 136 AVLRRCAREGQ 146 >gi|168234465|ref|ZP_02659523.1| ribosomal RNA small subunit methyltransferase B [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|194470953|ref|ZP_03076937.1| ribosomal RNA small subunit methyltransferase B [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|194457317|gb|EDX46156.1| ribosomal RNA small subunit methyltransferase B [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|205331616|gb|EDZ18380.1| ribosomal RNA small subunit methyltransferase B [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] Length = 429 Score = 43.9 bits (103), Expect = 0.007, Method: Composition-based stats. Identities = 20/130 (15%), Positives = 49/130 (37%), Gaps = 3/130 (2%) Query: 29 QIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLIS 88 Q ++ + + E + ++ ++ D + + GV+ ++ LI+ Sbjct: 4 QNNLRSLAAQAVEQVVEQGQSLSNVLPPLQQKVADKDKALLQELCFGVLRTLSQLEWLIN 63 Query: 89 SCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINA 148 ++ + + + ++ G +L+ VP ++E V A IN Sbjct: 64 KLMSRPMTGKQ--RTVHYLIMVGFYQLLYTR-VPPHAALAETVEGAVAIKRPQLKGLING 120 Query: 149 VLDKVSRKEE 158 VL + R++E Sbjct: 121 VLRQFQRQQE 130 >gi|229515917|ref|ZP_04405374.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholerae TMA 21] gi|229524946|ref|ZP_04414351.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholerae bv. albensis VL426] gi|229338527|gb|EEO03544.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholerae bv. albensis VL426] gi|229347017|gb|EEO11979.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholerae TMA 21] Length = 426 Score = 43.9 bits (103), Expect = 0.007, Method: Composition-based stats. Identities = 32/139 (23%), Positives = 50/139 (35%), Gaps = 16/139 (11%) Query: 20 RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79 R AA ALYQ+ +G S + + + D + I +GV+ + Sbjct: 4 RAAAASALYQVVDLGHSLSNAL-------------PAAQQQIRPRDHALLQEICYGVLRQ 50 Query: 80 KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139 + IS L EK + ++ G+ +L +P + E V A D Sbjct: 51 LPRL-ESISQALMEK-PLKGKQRVFHFLILVGLYQLSFMR-IPAHAAVGETVEGAQDLKG 107 Query: 140 GDEPKFINAVLDKVSRKEE 158 INAVL R +E Sbjct: 108 PRLRGLINAVLRNYQRDQE 126 >gi|220933384|ref|YP_002512283.1| sun protein [Thioalkalivibrio sp. HL-EbGR7] gi|219994694|gb|ACL71296.1| sun protein [Thioalkalivibrio sp. HL-EbGR7] Length = 432 Score = 43.9 bits (103), Expect = 0.007, Method: Composition-based stats. Identities = 23/140 (16%), Positives = 51/140 (36%), Gaps = 16/140 (11%) Query: 20 RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79 R ++AL ++ I G S ++++ + + D + + + + Sbjct: 4 RQITLKALKRVVINGASLSDVL-------------PPLLAPLAPRDRAFAQALAFATLRW 50 Query: 80 KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139 ++ L L++ D + ++ G+ EL+ P I E +A Sbjct: 51 HHRLEALTGRLLSK--PMRDKDRDVGLVIEMGLCELLYLR-TPDYAAIQETAGLAKSLGK 107 Query: 140 GDEPKFINAVLDKVSRKEEI 159 +NAVL +V R+ + Sbjct: 108 PWATGVVNAVLRRVQREGDA 127 >gi|168239759|ref|ZP_02664817.1| ribosomal RNA small subunit methyltransferase B [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|194736151|ref|YP_002116352.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|224493267|sp|B4TXB2|RSMB_SALSV RecName: Full=Ribosomal RNA small subunit methyltransferase B; AltName: Full=16S rRNA m5C967 methyltransferase; AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase rsmB gi|194711653|gb|ACF90874.1| ribosomal RNA small subunit methyltransferase B [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|197287575|gb|EDY26967.1| ribosomal RNA small subunit methyltransferase B [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] Length = 429 Score = 43.9 bits (103), Expect = 0.007, Method: Composition-based stats. Identities = 20/130 (15%), Positives = 49/130 (37%), Gaps = 3/130 (2%) Query: 29 QIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLIS 88 Q ++ + + E + ++ ++ D + + GV+ ++ LI+ Sbjct: 4 QNNLRSLAAQAVEQVVEQGQSLSNVLPPLQQKVADKDKALLQELCFGVLRTLSQLEWLIN 63 Query: 89 SCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINA 148 ++ + + + ++ G +L+ VP ++E V A IN Sbjct: 64 KLMSRPMTGKQ--RTVHYLIMVGFYQLLYTR-VPPHAALAETVEGAVAIKRPQLKGLING 120 Query: 149 VLDKVSRKEE 158 VL + R++E Sbjct: 121 VLRQFQRQQE 130 >gi|297626327|ref|YP_003688090.1| Sun, tRNA and rRNA cytosine-C5-methylases [Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1] gi|296922092|emb|CBL56660.1| Sun, tRNA and rRNA cytosine-C5-methylases [Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1] Length = 439 Score = 43.9 bits (103), Expect = 0.007, Method: Composition-based stats. Identities = 21/128 (16%), Positives = 43/128 (33%), Gaps = 6/128 (4%) Query: 30 IDIIGCSTTEIISEYE---TYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLL 86 +D + EI+ E + Y A + + D + + +G D + Sbjct: 1 MDRPRRTAFEILREVDRRGAYANLATRQAINDQELTGRDAAFVTELAYGTCRMLGTYDAI 60 Query: 87 ISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFI 146 ++ + L + LR G +L+ +P + V +A Sbjct: 61 LAQA--SGRDLNDLQPDIVDALRLGAHQLLGMR-IPDRAAVDTTVDLAAIVVGERVAGLA 117 Query: 147 NAVLDKVS 154 NA++ KV+ Sbjct: 118 NAIMRKVA 125 >gi|218767200|ref|YP_002341712.1| SUN homolog [Neisseria meningitidis Z2491] gi|121051208|emb|CAM07479.1| SUN homolog [Neisseria meningitidis Z2491] gi|319411405|emb|CBY91816.1| ribosomal RNA small subunit methyltransferase B (rRNA (cytosine-C(5)-)-methyltransferase; 16S rRNA m5C967 methyltransferase) [Neisseria meningitidis WUE 2594] Length = 419 Score = 43.9 bits (103), Expect = 0.007, Method: Composition-based stats. Identities = 24/126 (19%), Positives = 50/126 (39%), Gaps = 17/126 (13%) Query: 34 GCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTE 93 G + +++++ T A +L + D+ + G + +++ L + Sbjct: 20 GRNLQDVLAQIRT----AHPDLTAQENGALQDIAY------GCQRYLGSLKHMLAQMLKK 69 Query: 94 KWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVC-IAHDFFYGDEPKFINAVLDK 152 + L S+L A + +L + P V+ +E V IA G F NA+L + Sbjct: 70 --PIG--NPQLESLLLAALYQLHYTRNAPHAVV-NEAVESIAKI-GRGQYRSFANAILRR 123 Query: 153 VSRKEE 158 R+ + Sbjct: 124 FLRERD 129 >gi|26249873|ref|NP_755913.1| 16S rRNA methyltransferase B [Escherichia coli CFT073] gi|227883420|ref|ZP_04001225.1| 16S rRNA methyltransferase B [Escherichia coli 83972] gi|300979825|ref|ZP_07174727.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli MS 45-1] gi|301046059|ref|ZP_07193238.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli MS 185-1] gi|46396925|sp|Q8FD12|RSMB_ECOL6 RecName: Full=Ribosomal RNA small subunit methyltransferase B; AltName: Full=16S rRNA m5C967 methyltransferase; AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase rsmB gi|26110301|gb|AAN82487.1|AE016767_247 SUN protein [Escherichia coli CFT073] gi|227839564|gb|EEJ50030.1| 16S rRNA methyltransferase B [Escherichia coli 83972] gi|300301944|gb|EFJ58329.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli MS 185-1] gi|300409431|gb|EFJ92969.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli MS 45-1] gi|307555376|gb|ADN48151.1| 16S rRNA m5C967 methyltransferase [Escherichia coli ABU 83972] gi|315292336|gb|EFU51688.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli MS 153-1] Length = 429 Score = 43.9 bits (103), Expect = 0.007, Method: Composition-based stats. Identities = 26/147 (17%), Positives = 55/147 (37%), Gaps = 17/147 (11%) Query: 12 LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71 + +R + R A QA+ Q+ G S + I+ ++ D + Sbjct: 1 MKKQRNL-RSMAAQAIEQVVEQGQSLSNIL-------------PPLQQKVSDKDKALLQE 46 Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131 + GV+ D LI+ + + + + ++ G+ +L+ +P ++E V Sbjct: 47 LCFGVLRTLSQSDWLINKLMARPMTGKQ--RTVHYLIMVGLYQLLYTR-IPPHAALAETV 103 Query: 132 CIAHDFFYGDEPKFINAVLDKVSRKEE 158 A IN VL + R+++ Sbjct: 104 EGAVAIKRPQLKGLINGVLRQFQRQQD 130 >gi|238021729|ref|ZP_04602155.1| hypothetical protein GCWU000324_01632 [Kingella oralis ATCC 51147] gi|237866343|gb|EEP67385.1| hypothetical protein GCWU000324_01632 [Kingella oralis ATCC 51147] Length = 418 Score = 43.9 bits (103), Expect = 0.007, Method: Composition-based stats. Identities = 25/136 (18%), Positives = 53/136 (38%), Gaps = 13/136 (9%) Query: 24 VQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHI 83 VQ L + ++ + +S+ + + EL + + D+ + G + Sbjct: 6 VQTLAAQTLAAVASGKNLSDELAHIIAQNPELTAQDKGMLQDIAY------GCQRHLGSL 59 Query: 84 DLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVC-IAHDFFYGDE 142 ++ L + + L S L + +L + P V+ +E V IA +G Sbjct: 60 KFMLGKMLNK--PID--NEALQSYLLVALYQLNHTQNAPHAVV-NEAVNHIA-QIGHGQY 113 Query: 143 PKFINAVLDKVSRKEE 158 F NA+L + R+++ Sbjct: 114 RSFANAILRRFLREKD 129 >gi|17986519|ref|NP_539153.1| 16S rRNA m(5)C 967 methyltransferase [Brucella melitensis bv. 1 str. 16M] gi|17982123|gb|AAL51417.1| 16S rRNA m(5)c 967 methyltransferase [Brucella melitensis bv. 1 str. 16M] Length = 424 Score = 43.9 bits (103), Expect = 0.007, Method: Composition-based stats. Identities = 18/97 (18%), Positives = 37/97 (38%), Gaps = 8/97 (8%) Query: 65 DLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVE 124 D R I+ + + I+ I+ L + L +L V ++ +P Sbjct: 28 DRALVRAILGSALHNRGSIERAINKRLDR--PLPENAVALKHLLHVAVAQIFY-LDLPDH 84 Query: 125 VIISEYVCIAHDFFYGDEPKF---INAVLDKVSRKEE 158 + V A+ K+ +NA+L +++R +E Sbjct: 85 SAVDLAVEAAN--SDPRNRKYAGLVNALLRRLARNKE 119 >gi|290512100|ref|ZP_06551468.1| ribosomal RNA small subunit methyltransferase B [Klebsiella sp. 1_1_55] gi|289775890|gb|EFD83890.1| ribosomal RNA small subunit methyltransferase B [Klebsiella sp. 1_1_55] Length = 431 Score = 43.9 bits (103), Expect = 0.007, Method: Composition-based stats. Identities = 24/140 (17%), Positives = 52/140 (37%), Gaps = 16/140 (11%) Query: 20 RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79 R A QA+ Q+ G S + ++ ++ D + + GV+ Sbjct: 8 RSLAAQAIEQVVEQGQSLSNVL-------------PPLQQKVSDKDKALLQELCFGVLRT 54 Query: 80 KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139 ++ LI+ + + + + ++ G+ +L+ +P ++E V A Sbjct: 55 LSQLEWLINKLMARPMTGKQ--RTVHFLIMVGLYQLLYTR-IPPHAALAETVEGAVAIKR 111 Query: 140 GDEPKFINAVLDKVSRKEEI 159 IN VL + R++E Sbjct: 112 PQLKGLINGVLRQFQRQQEA 131 >gi|229530170|ref|ZP_04419559.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholerae 12129(1)] gi|229332303|gb|EEN97790.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholerae 12129(1)] gi|327482955|gb|AEA77362.1| Ribosomal RNA small subunit methyltransferase B [Vibrio cholerae LMA3894-4] Length = 426 Score = 43.9 bits (103), Expect = 0.007, Method: Composition-based stats. Identities = 32/139 (23%), Positives = 50/139 (35%), Gaps = 16/139 (11%) Query: 20 RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79 R AA ALYQ+ +G S + + + D + I +GV+ + Sbjct: 4 RAAAASALYQVVDLGHSLSNAL-------------PAAQQQIRPRDHALLQEICYGVLRQ 50 Query: 80 KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139 + IS L EK + ++ G+ +L +P + E V A D Sbjct: 51 LPRL-ESISQALMEK-PLKGKQRVFHFLILVGLYQLSFMR-IPAHAAVGETVEGAQDLQG 107 Query: 140 GDEPKFINAVLDKVSRKEE 158 INAVL R +E Sbjct: 108 PRLRGLINAVLRNYQRDQE 126 >gi|218691575|ref|YP_002399787.1| 16S rRNA methyltransferase B [Escherichia coli ED1a] gi|254766857|sp|B7N0S9|RSMB_ECO81 RecName: Full=Ribosomal RNA small subunit methyltransferase B; AltName: Full=16S rRNA m5C967 methyltransferase; AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase rsmB gi|218429139|emb|CAR09947.1| 16S rRNA m5C967 methyltransferase, S-adenosyl-L-methionine-dependent [Escherichia coli ED1a] Length = 429 Score = 43.9 bits (103), Expect = 0.007, Method: Composition-based stats. Identities = 25/147 (17%), Positives = 56/147 (38%), Gaps = 17/147 (11%) Query: 12 LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71 + +R + R A QA+ Q+ G S + I+ ++ D + Sbjct: 1 MKKQRNL-RSMAAQAIEQVVEQGQSLSNIL-------------PPLQQKVSDKDKALLQE 46 Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131 + GV+ ++ LI+ + + + + ++ G+ +L+ +P ++E V Sbjct: 47 LCFGVLRTLSQLEWLINKLMARPMTGKQ--RTVHYLIMVGLYQLLYTR-IPPHAALAETV 103 Query: 132 CIAHDFFYGDEPKFINAVLDKVSRKEE 158 A IN VL + R+++ Sbjct: 104 EGAVAIKRPQLKGLINGVLRQFQRQQD 130 >gi|20095011|ref|NP_614858.1| tRNA/rRNA cytosine-C5-methylase [Methanopyrus kandleri AV19] gi|19888274|gb|AAM02788.1| tRNA/rRNA cytosine-C5-methylase [Methanopyrus kandleri AV19] Length = 431 Score = 43.9 bits (103), Expect = 0.007, Method: Composition-based stats. Identities = 19/89 (21%), Positives = 37/89 (41%), Gaps = 2/89 (2%) Query: 67 EWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVI 126 + + + H ++ ++DL+++ L + L L + LR G E+ P V Sbjct: 25 RFVQALAHELVRVLGNVDLVLNRVL-RGSTVEDLHPYLRNALRVGTWEIHWRREHPGPVT 83 Query: 127 ISEYVCIAHDFFYGDEPKFINAVLDKVSR 155 V + + +F NA+L +V R Sbjct: 84 -KAVVDVVKERVGPKHARFANAILRQVER 111 >gi|163869265|ref|YP_001610521.1| SUN-family protein [Bartonella tribocorum CIP 105476] gi|161018968|emb|CAK02526.1| SUN-family protein [Bartonella tribocorum CIP 105476] Length = 454 Score = 43.9 bits (103), Expect = 0.007, Method: Composition-based stats. Identities = 25/128 (19%), Positives = 42/128 (32%), Gaps = 10/128 (7%) Query: 40 IISEYETYRFCADTELDVESVY--LHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSF 97 ++ Y D E D R I+ + + I +S L Sbjct: 30 VVDRYTPLSGLTDNEHGHPQYLKLSQRDRLLCRAILTTSLRHRGQITAALSCFLERPLPS 89 Query: 98 SRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKF---INAVLDKVS 154 L L +L V +++ +P I V +A F +F +NA+L V+ Sbjct: 90 QALS--LQHLLHISVAQILY-LDIPDHAAIDLAVRVAK--FDPRMRRFSGVVNALLRNVA 144 Query: 155 RKEEIKRS 162 R+ R Sbjct: 145 REAAPLRQ 152 >gi|294660497|ref|NP_853291.2| putative transcription termination factor N utilization substance protein B [Mycoplasma gallisepticum str. R(low)] gi|284812158|gb|AAP56859.2| putative transcription termination factor N utilization substance protein B (NusB) [Mycoplasma gallisepticum str. R(low)] gi|284930777|gb|ADC30716.1| putative transcription termination factor N utilization substance protein B (NusB) [Mycoplasma gallisepticum str. R(high)] gi|284931318|gb|ADC31256.1| putative transcription termination factor N utilization substance protein B (NusB) [Mycoplasma gallisepticum str. F] Length = 130 Score = 43.9 bits (103), Expect = 0.007, Method: Composition-based stats. Identities = 25/127 (19%), Positives = 54/127 (42%), Gaps = 18/127 (14%) Query: 27 LYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLL 86 +YQ ++ + EI D E F G++++ I Sbjct: 21 IYQALLLDLNLDEIYQAISQLEDLKDQE--------------FLTNWTGLINQVPTI--- 63 Query: 87 ISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFI 146 +S+ L E WS++RLD ++ ++ + E + ++IS+ + ++ + K + Sbjct: 64 VSAHLKESWSWNRLDYMIKALFNLVITE-AKVLKTEKAILISQATKLIQEYGDLNSIKLV 122 Query: 147 NAVLDKV 153 +A+L+KV Sbjct: 123 SAILNKV 129 >gi|296269348|ref|YP_003651980.1| Fmu (Sun) domain-containing protein [Thermobispora bispora DSM 43833] gi|296092135|gb|ADG88087.1| Fmu (Sun) domain protein [Thermobispora bispora DSM 43833] Length = 465 Score = 43.9 bits (103), Expect = 0.008, Method: Composition-based stats. Identities = 26/137 (18%), Positives = 47/137 (34%), Gaps = 14/137 (10%) Query: 18 IARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVM 77 AR+AA L + E + Y L + + + +G + Sbjct: 29 EARIAAYDLL-----------RAVDERDAYANLLMPTLLRQRKITGREAALATELAYGTL 77 Query: 78 DRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDF 137 D +I +C + LD L +R G +L+ +P +S + + Sbjct: 78 RGLGTYDEIIGACGDR--APGELDPPLRDAIRLGAHQLL-RTRIPAHAAVSSTIDLIRLR 134 Query: 138 FYGDEPKFINAVLDKVS 154 ++ NAVL KV+ Sbjct: 135 VGPGPSRYANAVLRKVA 151 >gi|16766697|ref|NP_462312.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|167995183|ref|ZP_02576273.1| ribosomal RNA small subunit methyltransferase B [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|46396986|sp|Q8ZLM5|RSMB_SALTY RecName: Full=Ribosomal RNA small subunit methyltransferase B; AltName: Full=16S rRNA m5C967 methyltransferase; AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase rsmB gi|16421964|gb|AAL22271.1| putative rRNA methylase [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|205327090|gb|EDZ13854.1| ribosomal RNA small subunit methyltransferase B [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|261248565|emb|CBG26403.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica serovar Typhimurium str. D23580] gi|267995617|gb|ACY90502.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S] gi|301159951|emb|CBW19470.1| 16S rRNA methyltransferase [Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344] gi|312914431|dbj|BAJ38405.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica serovar Typhimurium str. T000240] gi|321226460|gb|EFX51510.1| Ribosomal RNA small subunit methyltransferase B [Salmonella enterica subsp. enterica serovar Typhimurium str. TN061786] gi|323131766|gb|ADX19196.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica serovar Typhimurium str. 4/74] gi|332990260|gb|AEF09243.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1] Length = 429 Score = 43.9 bits (103), Expect = 0.008, Method: Composition-based stats. Identities = 20/130 (15%), Positives = 49/130 (37%), Gaps = 3/130 (2%) Query: 29 QIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLIS 88 Q ++ + + E + ++ ++ D + + GV+ ++ LI+ Sbjct: 4 QNNLRSLAAQAVEQVVEQGQSLSNVLPPLQQKVADKDKALLQELCFGVLRTLSQLEWLIN 63 Query: 89 SCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINA 148 ++ + + + ++ G +L+ VP ++E V A IN Sbjct: 64 KLMSRPMTGKQ--RTVHYLIMVGFYQLLYTR-VPPHAALAETVEGAVSIKRPQLKGLING 120 Query: 149 VLDKVSRKEE 158 VL + R++E Sbjct: 121 VLRQFQRQQE 130 >gi|328950801|ref|YP_004368136.1| NusB/RsmB/TIM44 [Marinithermus hydrothermalis DSM 14884] gi|328451125|gb|AEB12026.1| NusB/RsmB/TIM44 [Marinithermus hydrothermalis DSM 14884] Length = 417 Score = 43.9 bits (103), Expect = 0.008, Method: Composition-based stats. Identities = 20/100 (20%), Positives = 36/100 (36%), Gaps = 5/100 (5%) Query: 58 ESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIE 117 + D + +G + +++D L++ L L + LRAG E + Sbjct: 42 NTRLSPEDRGLATHLTYGTLRHLRYLDHLLAPHLNA---PHHLPPPVRWALRAGAYERLF 98 Query: 118 CHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKE 157 V+ S +V NAVL +V+ +E Sbjct: 99 LEHPAYAVVHS-WVEETKR-RAPRLAGLTNAVLRRVTHRE 136 >gi|238913877|ref|ZP_04657714.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica serovar Tennessee str. CDC07-0191] Length = 429 Score = 43.9 bits (103), Expect = 0.008, Method: Composition-based stats. Identities = 20/130 (15%), Positives = 49/130 (37%), Gaps = 3/130 (2%) Query: 29 QIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLIS 88 Q ++ + + E + ++ ++ D + + GV+ ++ LI+ Sbjct: 4 QNNLRSLAAQAVEQVVEQGQSLSNVLPPLQQKVADKDKALLQELCFGVLRTLSQLEWLIN 63 Query: 89 SCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINA 148 ++ + + + ++ G +L+ VP ++E V A IN Sbjct: 64 KLMSRPMTGKQ--RTVHYLIMVGFYQLLYTR-VPPHAALAETVEGAVSIKRPQLKGLING 120 Query: 149 VLDKVSRKEE 158 VL + R++E Sbjct: 121 VLRQFQRQQE 130 >gi|168245235|ref|ZP_02670167.1| ribosomal RNA small subunit methyltransferase B [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|168468035|ref|ZP_02701872.1| ribosomal RNA small subunit methyltransferase B [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|194447684|ref|YP_002047433.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|200388990|ref|ZP_03215602.1| ribosomal RNA small subunit methyltransferase B [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|224493263|sp|B4TJX9|RSMB_SALHS RecName: Full=Ribosomal RNA small subunit methyltransferase B; AltName: Full=16S rRNA m5C967 methyltransferase; AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase rsmB gi|194405988|gb|ACF66207.1| ribosomal RNA small subunit methyltransferase B [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|195628892|gb|EDX48302.1| ribosomal RNA small subunit methyltransferase B [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|199606088|gb|EDZ04633.1| ribosomal RNA small subunit methyltransferase B [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|205336021|gb|EDZ22785.1| ribosomal RNA small subunit methyltransferase B [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] Length = 429 Score = 43.9 bits (103), Expect = 0.008, Method: Composition-based stats. Identities = 20/130 (15%), Positives = 49/130 (37%), Gaps = 3/130 (2%) Query: 29 QIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLIS 88 Q ++ + + E + ++ ++ D + + GV+ ++ LI+ Sbjct: 4 QNNLRSLAAQAVEQVVEQGQSLSNVLPPLQQKVADKDKALLQELCFGVLRTLSQLEWLIN 63 Query: 89 SCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINA 148 ++ + + + ++ G +L+ VP ++E V A IN Sbjct: 64 KLMSRPMTGKQ--RTVHYLIMVGFYQLLYTR-VPPHAALAETVEGAVSIKRPQLKGLING 120 Query: 149 VLDKVSRKEE 158 VL + R++E Sbjct: 121 VLRQFQRQQE 130 >gi|198244494|ref|YP_002217372.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|224493260|sp|B5FJI4|RSMB_SALDC RecName: Full=Ribosomal RNA small subunit methyltransferase B; AltName: Full=16S rRNA m5C967 methyltransferase; AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase rsmB gi|197939010|gb|ACH76343.1| ribosomal RNA small subunit methyltransferase B [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|326625153|gb|EGE31498.1| ribosomal RNA small subunit methyltransferase B [Salmonella enterica subsp. enterica serovar Dublin str. 3246] Length = 429 Score = 43.9 bits (103), Expect = 0.008, Method: Composition-based stats. Identities = 20/130 (15%), Positives = 49/130 (37%), Gaps = 3/130 (2%) Query: 29 QIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLIS 88 Q ++ + + E + ++ ++ D + + GV+ ++ LI+ Sbjct: 4 QNNLRSLAAQAVEQVVEQGQSLSNVLPPLQQKVADKDKALLQELCFGVLRTLSQLEWLIN 63 Query: 89 SCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINA 148 ++ + + + ++ G +L+ VP ++E V A IN Sbjct: 64 KLMSRPMTGKQ--RTVHYLIMVGFYQLLYTR-VPPHAALAETVEGAVSIKRPQLKGLING 120 Query: 149 VLDKVSRKEE 158 VL + R++E Sbjct: 121 VLRQFQRQQE 130 >gi|56415328|ref|YP_152403.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|197364258|ref|YP_002143895.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|81360778|sp|Q5PIT6|RSMB_SALPA RecName: Full=Ribosomal RNA small subunit methyltransferase B; AltName: Full=16S rRNA m5C967 methyltransferase; AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase rsmB gi|224493266|sp|B5BGV5|RSMB_SALPK RecName: Full=Ribosomal RNA small subunit methyltransferase B; AltName: Full=16S rRNA m5C967 methyltransferase; AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase rsmB gi|56129585|gb|AAV79091.1| sun protein [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|197095735|emb|CAR61305.1| sun protein [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] Length = 429 Score = 43.9 bits (103), Expect = 0.008, Method: Composition-based stats. Identities = 20/130 (15%), Positives = 49/130 (37%), Gaps = 3/130 (2%) Query: 29 QIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLIS 88 Q ++ + + E + ++ ++ D + + GV+ ++ LI+ Sbjct: 4 QNNLRSLAAQAVEQVVEQGQSLSNVLPPLQQKVADKDKALLQELCFGVLRTLSQLEWLIN 63 Query: 89 SCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINA 148 ++ + + + ++ G +L+ VP ++E V A IN Sbjct: 64 KLMSRPMTGKQ--RTVHYLIMVGFYQLLYTR-VPPHAALAETVEGAVSIKRPQLKGLING 120 Query: 149 VLDKVSRKEE 158 VL + R++E Sbjct: 121 VLRQFQRQQE 130 >gi|260466787|ref|ZP_05812972.1| Fmu (Sun) domain protein [Mesorhizobium opportunistum WSM2075] gi|259029399|gb|EEW30690.1| Fmu (Sun) domain protein [Mesorhizobium opportunistum WSM2075] Length = 475 Score = 43.6 bits (102), Expect = 0.008, Method: Composition-based stats. Identities = 18/122 (14%), Positives = 41/122 (33%), Gaps = 8/122 (6%) Query: 52 DTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAG 111 + D R I+ + + I L++ L + + L IL Sbjct: 68 ENGHPQYKALDPRDRGLVRAILVTALRYRMTITGLLARRLEKPLPPN--ASALSHILHVA 125 Query: 112 VLELIECHSVPVEVIISEYVCIAHDFFYGDEPKF---INAVLDKVSRKEEIKRSGCVSAI 168 +++ +P + V A +F +N VL ++R ++ + ++A Sbjct: 126 AAQILF-LDIPDSAAVDLAVTHAK--SDPRTQRFSGLVNGVLRTLARAKDTELPAALAAT 182 Query: 169 TQ 170 + Sbjct: 183 DE 184 >gi|182679035|ref|YP_001833181.1| sun protein [Beijerinckia indica subsp. indica ATCC 9039] gi|182634918|gb|ACB95692.1| sun protein [Beijerinckia indica subsp. indica ATCC 9039] Length = 463 Score = 43.6 bits (102), Expect = 0.009, Method: Composition-based stats. Identities = 21/119 (17%), Positives = 39/119 (32%), Gaps = 8/119 (6%) Query: 43 EYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDM 102 + F ++ ++ + D R I+ + R I ++ L + R Sbjct: 49 QALDDFFAPESNPEILAGLEPRDKALARSIVTVALRRLGTIRAALTGLLAQG--LPRQAP 106 Query: 103 ILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKF---INAVLDKVSRKEE 158 L IL +++ VP + V F +NAVL ++R E Sbjct: 107 DLEWILLVAGAQILF-LDVPDHAAVDLAVRATR--LDPKSTPFAPLVNAVLRNLARGRE 162 >gi|85703964|ref|ZP_01035067.1| ribosomal RNA small subunit methyltransferase B, putative [Roseovarius sp. 217] gi|85671284|gb|EAQ26142.1| ribosomal RNA small subunit methyltransferase B, putative [Roseovarius sp. 217] Length = 422 Score = 43.6 bits (102), Expect = 0.009, Method: Composition-based stats. Identities = 33/152 (21%), Positives = 52/152 (34%), Gaps = 34/152 (22%) Query: 18 IARLAAVQALYQIDIIGCSTTEIISE-YETYRFCADTELDVESVYLHVDLEWFRVIIHGV 76 AR AAV L ++ E A LD D + + Sbjct: 7 TARSAAVHLL----------DRVLGEGRLMSELIAGGALDA---LSPPDRARAQRLATDT 53 Query: 77 MDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHD 136 + DLL+S L + + ++LR +EL + +++E V Sbjct: 54 LRGLDRADLLLSRHLRKAPPL----PV-QNVLRLATVELAQGGESHG--VVNEAVE---- 102 Query: 137 FFYGDEPK------FINAVLDKVSRKEEIKRS 162 G P+ +NAVL K++ EE RS Sbjct: 103 -TIGQSPRHAKLKGLVNAVLRKMT--EEAPRS 131 >gi|225165824|ref|ZP_03727605.1| Fmu (Sun) domain protein [Opitutaceae bacterium TAV2] gi|224799937|gb|EEG18385.1| Fmu (Sun) domain protein [Opitutaceae bacterium TAV2] Length = 201 Score = 43.6 bits (102), Expect = 0.009, Method: Composition-based stats. Identities = 16/104 (15%), Positives = 38/104 (36%), Gaps = 9/104 (8%) Query: 70 RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMIL-CSILRAGVLELIECH-SVPVEVII 127 + ++ G + I+ +I+ SR+ ++ ELIE V + Sbjct: 55 QNLVLGALRHLGRIEGIITPL------MSRMPRAEVQAVFLLAGYELIEGGGDGHVAKVA 108 Query: 128 SEYVCIAHDFFYGDEPKFINAVLDKVSRK-EEIKRSGCVSAITQ 170 V E + +NA++ K++ + + G ++ + Sbjct: 109 HHAVEQTKRLASQAEARMVNAIVRKLASALADEQPPGRLATAAR 152 >gi|62181914|ref|YP_218331.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|168264711|ref|ZP_02686684.1| ribosomal RNA small subunit methyltransferase B [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|224585203|ref|YP_002639002.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|75480382|sp|Q57J62|RSMB_SALCH RecName: Full=Ribosomal RNA small subunit methyltransferase B; AltName: Full=16S rRNA m5C967 methyltransferase; AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase rsmB gi|254766862|sp|C0PZV1|RSMB_SALPC RecName: Full=Ribosomal RNA small subunit methyltransferase B; AltName: Full=16S rRNA m5C967 methyltransferase; AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase rsmB gi|62129547|gb|AAX67250.1| putative rRNA methylase [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|205346881|gb|EDZ33512.1| ribosomal RNA small subunit methyltransferase B [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|224469731|gb|ACN47561.1| sun protein [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|322716400|gb|EFZ07971.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica serovar Choleraesuis str. A50] Length = 429 Score = 43.6 bits (102), Expect = 0.009, Method: Composition-based stats. Identities = 20/130 (15%), Positives = 49/130 (37%), Gaps = 3/130 (2%) Query: 29 QIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLIS 88 Q ++ + + E + ++ ++ D + + GV+ ++ LI+ Sbjct: 4 QNNLRSLAAQAVEQVVEQGQSLSNVLPPLQQKVADKDKALLQELCFGVLRTLSQLEWLIN 63 Query: 89 SCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINA 148 ++ + + + ++ G +L+ VP ++E V A IN Sbjct: 64 KLMSRPMTGKQ--RTVHYLIMVGFYQLLYTR-VPPHAALAETVEGAVSIKRPQLKGLING 120 Query: 149 VLDKVSRKEE 158 VL + R++E Sbjct: 121 VLRQFQRQQE 130 >gi|117926942|ref|YP_867559.1| sun protein [Magnetococcus sp. MC-1] gi|117610698|gb|ABK46153.1| 16S rRNA m(5)C-967 methyltransferase [Magnetococcus sp. MC-1] Length = 452 Score = 43.6 bits (102), Expect = 0.009, Method: Composition-based stats. Identities = 14/122 (11%), Positives = 42/122 (34%), Gaps = 4/122 (3%) Query: 32 IIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCL 91 + + + ++SE+ + ++ +S I+ G + ++ ++ + Sbjct: 11 MAAAAVSAMLSEHLPLETALEQQIHQQSGTSPEMRGRAHEIVVGTIRHMALLEATLTRFM 70 Query: 92 TEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDE-PKFINAVL 150 + + ++L + + P+ + E V + F+NAVL Sbjct: 71 QKDLKAKH--HYVRAVLLTALYQAQFMR-TPIHSAVDEAVKLVKQQPRDHNLSGFVNAVL 127 Query: 151 DK 152 + Sbjct: 128 RR 129 >gi|322615051|gb|EFY11975.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica serovar Montevideo str. 315996572] gi|322617338|gb|EFY14239.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-1] gi|322625560|gb|EFY22385.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-3] gi|322626402|gb|EFY23211.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-4] gi|322632086|gb|EFY28839.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-1] gi|322635035|gb|EFY31758.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-2] gi|322643264|gb|EFY39831.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica serovar Montevideo str. 531954] gi|322646652|gb|EFY43159.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica serovar Montevideo str. NC_MB110209-0054] gi|322649998|gb|EFY46417.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica serovar Montevideo str. OH_2009072675] gi|322652715|gb|EFY49055.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica serovar Montevideo str. CASC_09SCPH15965] gi|322659528|gb|EFY55772.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica serovar Montevideo str. 19N] gi|322665530|gb|EFY61717.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica serovar Montevideo str. 81038-01] gi|322670424|gb|EFY66563.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica serovar Montevideo str. MD_MDA09249507] gi|322670497|gb|EFY66631.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica serovar Montevideo str. 414877] gi|322675073|gb|EFY71156.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica serovar Montevideo str. 366867] gi|322681610|gb|EFY77639.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica serovar Montevideo str. 413180] gi|322685954|gb|EFY81943.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica serovar Montevideo str. 446600] gi|323195824|gb|EFZ80997.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica serovar Montevideo str. 609458-1] gi|323196420|gb|EFZ81571.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica serovar Montevideo str. 556150-1] gi|323202705|gb|EFZ87744.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica serovar Montevideo str. 609460] gi|323207310|gb|EFZ92260.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica serovar Montevideo str. 507440-20] gi|323211254|gb|EFZ96099.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica serovar Montevideo str. 556152] gi|323216037|gb|EGA00768.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica serovar Montevideo str. MB101509-0077] gi|323223472|gb|EGA07800.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica serovar Montevideo str. MB102109-0047] gi|323226798|gb|EGA10988.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica serovar Montevideo str. MB110209-0055] gi|323231840|gb|EGA15950.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica serovar Montevideo str. MB111609-0052] gi|323233207|gb|EGA17302.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica serovar Montevideo str. 2009083312] gi|323237274|gb|EGA21339.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica serovar Montevideo str. 2009085258] gi|323245509|gb|EGA29508.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica serovar Montevideo str. 315731156] gi|323249015|gb|EGA32937.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2009159199] gi|323250638|gb|EGA34519.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008282] gi|323256867|gb|EGA40581.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008283] gi|323263016|gb|EGA46563.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008284] gi|323266016|gb|EGA49511.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008285] gi|323272773|gb|EGA56176.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008287] Length = 429 Score = 43.6 bits (102), Expect = 0.009, Method: Composition-based stats. Identities = 20/130 (15%), Positives = 49/130 (37%), Gaps = 3/130 (2%) Query: 29 QIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLIS 88 Q ++ + + E + ++ ++ D + + GV+ ++ LI+ Sbjct: 4 QNNLRSLAAQAVEQVVEQGQSLSNVLPPLQQKVADKDKALLQELCFGVLRTLSQLEWLIN 63 Query: 89 SCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINA 148 ++ + + + ++ G +L+ VP ++E V A IN Sbjct: 64 KLMSRPMTGKQ--RTVHYLIMVGFYQLLYTR-VPPHAALAETVEGAVSIKRPQLKGLING 120 Query: 149 VLDKVSRKEE 158 VL + R++E Sbjct: 121 VLRQFQRQQE 130 >gi|258545467|ref|ZP_05705701.1| ribosomal RNA small subunit methyltransferase B [Cardiobacterium hominis ATCC 15826] gi|258519300|gb|EEV88159.1| ribosomal RNA small subunit methyltransferase B [Cardiobacterium hominis ATCC 15826] Length = 418 Score = 43.6 bits (102), Expect = 0.009, Method: Composition-based stats. Identities = 26/144 (18%), Positives = 55/144 (38%), Gaps = 26/144 (18%) Query: 18 IARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVM 77 AR AA+ + +I+++ T + +S D ++ +++G + Sbjct: 2 KARQAAL----------HTIDGVINQHRTLNTLLAQD---KSRVSAADQALYQALVYGTL 48 Query: 78 DRKQHIDLLIS-----SCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVC 132 + + + L + T + IL G+ +L++ + V I+E V Sbjct: 49 RQYRALSALCAQMMEKPPATPGHPLA-------IILNLGLYQLLQMNLGDHGV-INETVN 100 Query: 133 IAHDFFYGDEPKFINAVLDKVSRK 156 +A INA+L +V R+ Sbjct: 101 LAPHHRLARAKGLINAILRRVQRE 124 >gi|161616434|ref|YP_001590399.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|197262016|ref|ZP_03162090.1| ribosomal RNA small subunit methyltransferase B [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|224493265|sp|A9N8B3|RSMB_SALPB RecName: Full=Ribosomal RNA small subunit methyltransferase B; AltName: Full=16S rRNA m5C967 methyltransferase; AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase rsmB gi|161365798|gb|ABX69566.1| hypothetical protein SPAB_04249 [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|197240271|gb|EDY22891.1| ribosomal RNA small subunit methyltransferase B [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] Length = 429 Score = 43.6 bits (102), Expect = 0.009, Method: Composition-based stats. Identities = 20/130 (15%), Positives = 49/130 (37%), Gaps = 3/130 (2%) Query: 29 QIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLIS 88 Q ++ + + E + ++ ++ D + + GV+ ++ LI+ Sbjct: 4 QNNLRSLAAQAVEQVVEQGQSLSNVLPPLQQKVADKDKALLQELCFGVLRTLSQLEWLIN 63 Query: 89 SCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINA 148 ++ + + + ++ G +L+ VP ++E V A IN Sbjct: 64 KLMSRPMTGKQ--RTVHYLIMVGFYQLLYTR-VPPHAALAETVEGAVSIKRPQLKGLING 120 Query: 149 VLDKVSRKEE 158 VL + R++E Sbjct: 121 VLRQFQRQQE 130 >gi|319899453|ref|YP_004159550.1| SUN-family protein [Bartonella clarridgeiae 73] gi|319403421|emb|CBI76989.1| SUN-family protein [Bartonella clarridgeiae 73] Length = 455 Score = 43.6 bits (102), Expect = 0.009, Method: Composition-based stats. Identities = 21/100 (21%), Positives = 37/100 (37%), Gaps = 8/100 (8%) Query: 65 DLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVE 124 D R I+ + + I + +S LT L +L + +++ VP Sbjct: 57 DRLLCRAILGAALRHRSQITVALSRFLTR--PLPSQAFSLHHLLHISITQILY-LDVPDH 113 Query: 125 VIISEYVCIAHDFFYGDEPKF---INAVLDKVSRKEEIKR 161 I V +A +F +NA+L +R+ I R Sbjct: 114 AAIDLAVRVAKI--DPRMRRFSGLVNAILRNFAREAAILR 151 >gi|260888974|ref|ZP_05900237.1| ribosomal RNA small subunit methyltransferase B [Leptotrichia hofstadii F0254] gi|260861034|gb|EEX75534.1| ribosomal RNA small subunit methyltransferase B [Leptotrichia hofstadii F0254] Length = 433 Score = 43.6 bits (102), Expect = 0.009, Method: Composition-based stats. Identities = 24/103 (23%), Positives = 41/103 (39%), Gaps = 11/103 (10%) Query: 58 ESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCL--TEKWSFSRLDMILCSILRAGVLEL 115 ++ Y + + +I+ V+ +ID LI + +K +L LR V +L Sbjct: 34 KNNYTKKEKMFITNVINVVIKNLIYIDYLIGKSVRNVKKRKIKQL-------LRISVAQL 86 Query: 116 IECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEE 158 S VI E IA + F+NA L + + +E Sbjct: 87 FFMESDNAGVIF-EAGEIAKIL-NAHQAGFVNATLQTILKNKE 127 >gi|197249972|ref|YP_002148329.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|224493258|sp|B5F7R5|RSMB_SALA4 RecName: Full=Ribosomal RNA small subunit methyltransferase B; AltName: Full=16S rRNA m5C967 methyltransferase; AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase rsmB gi|197213675|gb|ACH51072.1| ribosomal RNA small subunit methyltransferase B [Salmonella enterica subsp. enterica serovar Agona str. SL483] Length = 429 Score = 43.6 bits (102), Expect = 0.009, Method: Composition-based stats. Identities = 20/130 (15%), Positives = 49/130 (37%), Gaps = 3/130 (2%) Query: 29 QIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLIS 88 Q ++ + + E + ++ ++ D + + GV+ ++ LI+ Sbjct: 4 QNNLRSLAAQAVEQVVEQGQSLSNVLPPLQQKVADKDKALLQELCFGVLRTLSQLEWLIN 63 Query: 89 SCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINA 148 ++ + + + ++ G +L+ VP ++E V A IN Sbjct: 64 KLMSRPMTGKQ--RTVHYLIMVGFYQLLYTR-VPPHAALAETVEGAVSIKRPQLKGLING 120 Query: 149 VLDKVSRKEE 158 VL + R++E Sbjct: 121 VLRQFQRQQE 130 >gi|161506038|ref|YP_001573150.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. arizonae serovar 62:z4,z23:-- str. RSK2980] gi|224493259|sp|A9MN78|RSMB_SALAR RecName: Full=Ribosomal RNA small subunit methyltransferase B; AltName: Full=16S rRNA m5C967 methyltransferase; AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase rsmB gi|160867385|gb|ABX24008.1| hypothetical protein SARI_04219 [Salmonella enterica subsp. arizonae serovar 62:z4,z23:--] Length = 429 Score = 43.6 bits (102), Expect = 0.009, Method: Composition-based stats. Identities = 20/130 (15%), Positives = 49/130 (37%), Gaps = 3/130 (2%) Query: 29 QIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLIS 88 Q ++ + + E + ++ ++ D + + GV+ ++ LI+ Sbjct: 4 QNNLRSLAAQAVEQVVEQGQSLSNVLPPLQQKVADKDKALLQELCFGVLRTLSQLEWLIN 63 Query: 89 SCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINA 148 ++ + + + ++ G +L+ VP ++E V A IN Sbjct: 64 KLMSRPMTGKQ--RTVHYLIMVGFYQLLYTR-VPPHAALAETVEGAVSIKRPQLKGLING 120 Query: 149 VLDKVSRKEE 158 VL + R++E Sbjct: 121 VLRQFQRQQE 130 >gi|297581922|ref|ZP_06943842.1| sun protein [Vibrio cholerae RC385] gi|297533789|gb|EFH72630.1| sun protein [Vibrio cholerae RC385] Length = 434 Score = 43.6 bits (102), Expect = 0.009, Method: Composition-based stats. Identities = 31/139 (22%), Positives = 49/139 (35%), Gaps = 16/139 (11%) Query: 20 RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79 R AA ALYQ+ + R ++ + D + I +GV+ + Sbjct: 12 RAAAASALYQV-------------VDLGRSLSNALPAAQQQIRPRDHALLQEICYGVLRQ 58 Query: 80 KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139 + IS L EK + ++ G+ +L +P + E V A D Sbjct: 59 LPRL-ESISQALMEK-PLKGKQRVFHFLILVGLYQLSFMR-IPAHAAVGETVEGAQDLKG 115 Query: 140 GDEPKFINAVLDKVSRKEE 158 INAVL R +E Sbjct: 116 PRLRGLINAVLRNYQRDQE 134 >gi|167554205|ref|ZP_02347946.1| ribosomal RNA small subunit methyltransferase B [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|205321540|gb|EDZ09379.1| ribosomal RNA small subunit methyltransferase B [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] Length = 429 Score = 43.6 bits (102), Expect = 0.009, Method: Composition-based stats. Identities = 20/130 (15%), Positives = 49/130 (37%), Gaps = 3/130 (2%) Query: 29 QIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLIS 88 Q ++ + + E + ++ ++ D + + GV+ ++ LI+ Sbjct: 4 QNNLRSLAAQAVEQVVEQGQSLSNVLPPLQQKVADKDKALLQELCFGVLRTLSQLEWLIN 63 Query: 89 SCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINA 148 ++ + + + ++ G +L+ VP ++E V A IN Sbjct: 64 KLMSRPMTGKQ--RTVHYLIMVGFYQLLYTR-VPPHAALAETVEGAVSIKRPQLKGLING 120 Query: 149 VLDKVSRKEE 158 VL + R++E Sbjct: 121 VLRQFQRQQE 130 >gi|50086581|ref|YP_048091.1| 16S rRNA m5C967 SAM-dependent methyltransferase [Acinetobacter sp. ADP1] gi|49532555|emb|CAG70269.1| 16S rRNA m5C967 SAM-dependent methyltransferase [Acinetobacter sp. ADP1] Length = 434 Score = 43.6 bits (102), Expect = 0.009, Method: Composition-based stats. Identities = 18/100 (18%), Positives = 41/100 (41%), Gaps = 5/100 (5%) Query: 59 SVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIEC 118 + D F ++ G + + + + LT+ + + + + L G+ +++ C Sbjct: 39 NDIPERDRALFHELVLGTLRQWYALKSITLPLLTK--PLN--NETVETCLYLGLYQVL-C 93 Query: 119 HSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEE 158 +P ISE V + +NA+L + +R+ E Sbjct: 94 TRIPAHAAISETVTATKQLGFHALSGIVNAILRRATRETE 133 >gi|157148863|ref|YP_001456182.1| 16S rRNA methyltransferase B [Citrobacter koseri ATCC BAA-895] gi|224493244|sp|A8AQI3|RSMB_CITK8 RecName: Full=Ribosomal RNA small subunit methyltransferase B; AltName: Full=16S rRNA m5C967 methyltransferase; AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase rsmB gi|157086068|gb|ABV15746.1| hypothetical protein CKO_04701 [Citrobacter koseri ATCC BAA-895] Length = 428 Score = 43.6 bits (102), Expect = 0.010, Method: Composition-based stats. Identities = 24/145 (16%), Positives = 54/145 (37%), Gaps = 16/145 (11%) Query: 15 RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74 ++ R A QA+ Q+ G S + ++ ++ D + + Sbjct: 2 KKQNLRSLAAQAVEQVVEQGQSLSNVL-------------PPLQQKVSDKDKALLQELCF 48 Query: 75 GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134 GV+ ++ LI+ ++ + + + ++ G +L+ +P ++E V A Sbjct: 49 GVLRTLSQLEWLINKLMSRPMTGKQ--RTVHYLIMVGFYQLLHTR-IPPHAALAETVEGA 105 Query: 135 HDFFYGDEPKFINAVLDKVSRKEEI 159 IN VL + R++E Sbjct: 106 VAIKRPQLKGLINGVLRQFQRQQEA 130 >gi|258622988|ref|ZP_05718003.1| sun protein [Vibrio mimicus VM573] gi|258584771|gb|EEW09505.1| sun protein [Vibrio mimicus VM573] Length = 438 Score = 43.6 bits (102), Expect = 0.010, Method: Composition-based stats. Identities = 32/139 (23%), Positives = 50/139 (35%), Gaps = 16/139 (11%) Query: 20 RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79 R AA ALYQ+ +G S + + + D + I +GV+ + Sbjct: 16 RAAAASALYQVVDLGQSLSNAL-------------PAAQQQIRPRDHALLQEICYGVLRQ 62 Query: 80 KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139 + IS L EK + ++ G+ +L +P + E V A D Sbjct: 63 LPRL-ESISQSLMEK-PLKGKQRVFHFLILVGLYQLSFMR-IPAHAAVGETVEGAQDLKG 119 Query: 140 GDEPKFINAVLDKVSRKEE 158 INAVL R +E Sbjct: 120 PRLRGLINAVLRNYQRDQE 138 >gi|72383594|ref|YP_292949.1| Fmu, rRNA SAM-dependent methyltransferase [Prochlorococcus marinus str. NATL2A] gi|72003444|gb|AAZ59246.1| Fmu, rRNA SAM-dependent methyltransferase [Prochlorococcus marinus str. NATL2A] Length = 438 Score = 43.6 bits (102), Expect = 0.010, Method: Composition-based stats. Identities = 24/143 (16%), Positives = 55/143 (38%), Gaps = 20/143 (13%) Query: 19 ARLAA---VQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 AR AA +QA + G + ++ E + + +D + +G Sbjct: 6 ARKAAWDVIQA-----VGGGAFADVALERIFNLYS----------FKSIDKGLITELSYG 50 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135 + ++ ++D I L + + +L +L G+ ++++ +P I+ V +A Sbjct: 51 AIRQRYYLDCWID-YLGKV-PAKKQPPLLRWLLHLGLYQVLKMKRIPPAAAINTTVELAK 108 Query: 136 DFFYGDEPKFINAVLDKVSRKEE 158 + +N +L R +E Sbjct: 109 TYHLKKLAPVVNGILRSALRSKE 131 >gi|90406716|ref|ZP_01214909.1| sun protein [Psychromonas sp. CNPT3] gi|90312169|gb|EAS40261.1| sun protein [Psychromonas sp. CNPT3] Length = 434 Score = 43.6 bits (102), Expect = 0.011, Method: Composition-based stats. Identities = 19/106 (17%), Positives = 37/106 (34%), Gaps = 11/106 (10%) Query: 58 ESVYLHVDLEWFRVIIHGVMDRKQHID----LLISSCLTEKWSFSRLDMILCSILRAGVL 113 + D +V+ +GV+ +D L+ L K + ++ G+ Sbjct: 29 QKDLTPKDKALLQVLCYGVLRTLPRLDFFCRSLMQKPLKGK------QRVFHFLILVGIY 82 Query: 114 ELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEI 159 +L+ +P + E V A +N VL R++E Sbjct: 83 QLLYTR-IPSHAAVGETVNGAKALNKQALKGMVNGVLRNFLREQEA 127 >gi|332159134|ref|YP_004424413.1| sun protein (fmu protein) [Pyrococcus sp. NA2] gi|331034597|gb|AEC52409.1| sun protein (fmu protein) [Pyrococcus sp. NA2] Length = 450 Score = 43.6 bits (102), Expect = 0.011, Method: Composition-based stats. Identities = 26/118 (22%), Positives = 46/118 (38%), Gaps = 6/118 (5%) Query: 38 TEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSF 97 E+ S++ R E + + + + + ID +I+S L + Sbjct: 23 KELSSKHALERIFRKVEGRDRETARGIAHAY----VFEIEKWRAKIDFIINSVL-KGSRV 77 Query: 98 SRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSR 155 LD L ++LR GV E+ V + V + + F KF NA+L +V + Sbjct: 78 EDLDPYLANLLRIGVFEMKF-KGVNPAIATDSIVRVVKEKFDLTRAKFANAILREVEK 134 >gi|168823234|ref|ZP_02835234.1| ribosomal RNA small subunit methyltransferase B [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|205354964|ref|YP_002228765.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|207858650|ref|YP_002245301.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|224493261|sp|B5R1E5|RSMB_SALEP RecName: Full=Ribosomal RNA small subunit methyltransferase B; AltName: Full=16S rRNA m5C967 methyltransferase; AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase rsmB gi|224493262|sp|B5RH47|RSMB_SALG2 RecName: Full=Ribosomal RNA small subunit methyltransferase B; AltName: Full=16S rRNA m5C967 methyltransferase; AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase rsmB gi|205274745|emb|CAR39801.1| sun protein [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|205340499|gb|EDZ27263.1| ribosomal RNA small subunit methyltransferase B [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|206710453|emb|CAR34811.1| sun protein [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|326630113|gb|EGE36456.1| ribosomal RNA small subunit methyltransferase B [Salmonella enterica subsp. enterica serovar Gallinarum str. 9] Length = 429 Score = 43.6 bits (102), Expect = 0.011, Method: Composition-based stats. Identities = 20/130 (15%), Positives = 49/130 (37%), Gaps = 3/130 (2%) Query: 29 QIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLIS 88 Q ++ + + E + ++ ++ D + + GV+ ++ LI+ Sbjct: 4 QNNLRSLAAQAVELVVEQGQSLSNVLPPLQQKVADKDKALLQELCFGVLRTLSQLEWLIN 63 Query: 89 SCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINA 148 ++ + + + ++ G +L+ VP ++E V A IN Sbjct: 64 KLMSRPMTGKQ--RTVHYLIMVGFYQLLYTR-VPPHAALAETVEGAVAIKRPQLKGLING 120 Query: 149 VLDKVSRKEE 158 VL + R++E Sbjct: 121 VLRQFQRQQE 130 >gi|254784303|ref|YP_003071731.1| ribosomal RNA small subunit methyltransferase B [Teredinibacter turnerae T7901] gi|237683392|gb|ACR10656.1| ribosomal RNA small subunit methyltransferase B [Teredinibacter turnerae T7901] Length = 433 Score = 43.2 bits (101), Expect = 0.011, Method: Composition-based stats. Identities = 30/152 (19%), Positives = 54/152 (35%), Gaps = 19/152 (12%) Query: 19 ARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMD 78 AR VQA + E+++++ + DT + + D F+ + +G + Sbjct: 4 AR---VQA-------ARTLGEVLAKHCSLNKPFDTGI---NKLDERDRGLFQELCYGTLR 50 Query: 79 RKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFF 138 ++ + L + D + ++L G+ +L VP ISE V + Sbjct: 51 WYHRLEAIAGELLQK--PLRNKDQDVYALLLIGLYQLEYLR-VPDHAAISETVNASRALK 107 Query: 139 YGDEPKFINAVLDKVSRKEEI---KRSGCVSA 167 +N L R E K SG A Sbjct: 108 KPWASGLLNGALRSFQRDREQIFKKISGKPQA 139 >gi|262172810|ref|ZP_06040488.1| ribosomal RNA small subunit methyltransferase B [Vibrio mimicus MB-451] gi|261893886|gb|EEY39872.1| ribosomal RNA small subunit methyltransferase B [Vibrio mimicus MB-451] Length = 426 Score = 43.2 bits (101), Expect = 0.011, Method: Composition-based stats. Identities = 32/139 (23%), Positives = 50/139 (35%), Gaps = 16/139 (11%) Query: 20 RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79 R AA ALYQ+ +G S + + + D + I +GV+ + Sbjct: 4 RAAAASALYQVVDLGQSLSNAL-------------PAAQQQIRPRDHALLQEICYGVLRQ 50 Query: 80 KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139 + IS L EK + ++ G+ +L +P + E V A D Sbjct: 51 LPRL-ESISQSLMEK-PLKGKQRVFHFLILVGLYQLSFMR-IPAHAAVGETVEGAQDLKG 107 Query: 140 GDEPKFINAVLDKVSRKEE 158 INAVL R +E Sbjct: 108 PRLRGLINAVLRNYQRDQE 126 >gi|90019668|ref|YP_525495.1| Sun protein [Saccharophagus degradans 2-40] gi|89949268|gb|ABD79283.1| ribosomal RNA small subunit methyltransferase B [Saccharophagus degradans 2-40] Length = 445 Score = 43.2 bits (101), Expect = 0.012, Method: Composition-based stats. Identities = 30/148 (20%), Positives = 51/148 (34%), Gaps = 14/148 (9%) Query: 10 LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF 69 + S + I L A+ + +IS + D LD + Sbjct: 1 MAKSPNKRITNLRAL--------AAMTLAPVISGSRSLSTILDKALDAVE---PKERPLM 49 Query: 70 RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISE 129 + + G + ID LI+ L +K F D + +++ G+ ++ P I E Sbjct: 50 QTLCLGSLRVFPKID-LIARKLLQK-PFKSRDNDVYALIVLGIYQMDYLR-TPDHAAIGE 106 Query: 130 YVCIAHDFFYGDEPKFINAVLDKVSRKE 157 V A K IN VL R++ Sbjct: 107 TVEAAKALNKPWASKLINGVLRNYQREK 134 >gi|239832893|ref|ZP_04681222.1| Sun, sun protein [Ochrobactrum intermedium LMG 3301] gi|239825160|gb|EEQ96728.1| Sun, sun protein [Ochrobactrum intermedium LMG 3301] Length = 465 Score = 43.2 bits (101), Expect = 0.012, Method: Composition-based stats. Identities = 18/97 (18%), Positives = 37/97 (38%), Gaps = 8/97 (8%) Query: 65 DLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVE 124 D R I+ + + I+ I+ L + L +L + ++ +P Sbjct: 68 DRALVRAILGSALRNRGSIERAINKRLDR--PLPENAVALKHLLHVAIAQIFY-LDLPDH 124 Query: 125 VIISEYVCIAHDFFYGDEPKF---INAVLDKVSRKEE 158 + V A+ K+ +NA+L ++SR +E Sbjct: 125 SAVDLAVEAAN--SDPRNRKYAGLVNALLRRLSRNKE 159 >gi|23016809|ref|ZP_00056561.1| COG0144: tRNA and rRNA cytosine-C5-methylases [Magnetospirillum magnetotacticum MS-1] Length = 432 Score = 43.2 bits (101), Expect = 0.013, Method: Composition-based stats. Identities = 23/98 (23%), Positives = 39/98 (39%), Gaps = 3/98 (3%) Query: 59 SVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIEC 118 S D + R+++ + R ID LI C+ + + LR G+ +L+ Sbjct: 38 SKLEERDRGFVRMLLGTTLRRLGQIDALIEHCVEKPMRAGAAGA-EHA-LRLGICQLLF- 94 Query: 119 HSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRK 156 V IS V + K +NAVL ++ R+ Sbjct: 95 LDVAPHAAISTTVDLVKGSKLAGFAKLLNAVLRRLDRE 132 >gi|124025193|ref|YP_001014309.1| Sun protein (Fmu protein) [Prochlorococcus marinus str. NATL1A] gi|123960261|gb|ABM75044.1| Sun protein (Fmu protein) [Prochlorococcus marinus str. NATL1A] Length = 448 Score = 43.2 bits (101), Expect = 0.013, Method: Composition-based stats. Identities = 25/143 (17%), Positives = 54/143 (37%), Gaps = 20/143 (13%) Query: 19 ARLAA---VQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 AR AA +QA + G S ++ E + + +D + +G Sbjct: 15 ARKAAWEVIQA-----VGGGSFADVALERIFNLYS----------FKSIDKALITELSYG 59 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135 + ++ ++D I L + + +L +L G+ ++++ +P I+ V +A Sbjct: 60 AIRQRYYLDCWID-HLGKV-PAKKQPPLLRWLLHLGLYQVLKMKRIPPAAAINTTVELAK 117 Query: 136 DFFYGDEPKFINAVLDKVSRKEE 158 +N +L R +E Sbjct: 118 THHLRKLAPVVNGILRSALRSKE 140 >gi|296533616|ref|ZP_06896179.1| rRNA (cytosine-C(5)-)-methyltransferase [Roseomonas cervicalis ATCC 49957] gi|296266054|gb|EFH12116.1| rRNA (cytosine-C(5)-)-methyltransferase [Roseomonas cervicalis ATCC 49957] Length = 376 Score = 43.2 bits (101), Expect = 0.013, Method: Composition-based stats. Identities = 18/80 (22%), Positives = 31/80 (38%), Gaps = 12/80 (15%) Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA- 134 V+ R +D ++ L + + + LR G EL+ P ++ V + Sbjct: 14 VLRRLGSLDAVLEPSLRREPPPE-----VRNALRIGAAELL-LLETPPHAAVASCVDLVP 67 Query: 135 HDFFYGDEPKFINAVLDKVS 154 F +NAVL KV+ Sbjct: 68 RPF-----AGLVNAVLRKVA 82 >gi|13473485|ref|NP_105052.1| hypothetical protein mlr4098 [Mesorhizobium loti MAFF303099] gi|14024234|dbj|BAB50838.1| mlr4098 [Mesorhizobium loti MAFF303099] Length = 462 Score = 43.2 bits (101), Expect = 0.014, Method: Composition-based stats. Identities = 19/109 (17%), Positives = 40/109 (36%), Gaps = 8/109 (7%) Query: 65 DLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVE 124 D R I+ + + I L++ L + + L IL +++ +P Sbjct: 68 DRGLVRAILVTALRFRMTITGLLARRLEKPLPPN--ATALSHILHVAAAQILF-LDIPDS 124 Query: 125 VIISEYVCIAHDFFYGDEPKF---INAVLDKVSRKEEIKRSGCVSAITQ 170 + V A +F +N VL ++R +E + ++A + Sbjct: 125 AAVDLAVTHAK--SDPRTQRFSGLVNGVLRTLARAKETELPAALAATDE 171 >gi|320087854|emb|CBY97617.1| Ribosomal RNA small subunit methyltransferase B rRNA (cytosine-C(5)-)-methyltransferase; 16S rRNA m5C967 methyltransferase [Salmonella enterica subsp. enterica serovar Weltevreden str. 2007-60-3289-1] Length = 429 Score = 43.2 bits (101), Expect = 0.014, Method: Composition-based stats. Identities = 20/130 (15%), Positives = 49/130 (37%), Gaps = 3/130 (2%) Query: 29 QIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLIS 88 Q ++ + + E + ++ ++ D + + GV+ ++ LI+ Sbjct: 4 QNNLRSLAAQAVELVVEQGQSLSNVFPPLQQKVADKDKALLQELCFGVLRTLSQLEWLIN 63 Query: 89 SCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINA 148 ++ + + + ++ G +L+ VP ++E V A IN Sbjct: 64 KLMSRPMTGKQ--RTVHYLIMVGFYQLLYTR-VPPHAALAETVEGAVAIKRPQLKGLING 120 Query: 149 VLDKVSRKEE 158 VL + R++E Sbjct: 121 VLRQFQRQQE 130 >gi|260771086|ref|ZP_05880014.1| ribosomal RNA small subunit methyltransferase B [Vibrio furnissii CIP 102972] gi|260613975|gb|EEX39166.1| ribosomal RNA small subunit methyltransferase B [Vibrio furnissii CIP 102972] Length = 426 Score = 43.2 bits (101), Expect = 0.014, Method: Composition-based stats. Identities = 26/140 (18%), Positives = 47/140 (33%), Gaps = 16/140 (11%) Query: 20 RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79 R AA Q L+Q+ G S + + + D + I +G + Sbjct: 4 RAAAAQVLFQVVDKGQSLSMAL-------------PAAQQNIRPRDHALLQEICYGALRY 50 Query: 80 KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139 + I++ L + + ++ G+ +L +P + E V A D Sbjct: 51 LPRL-ESIANALMDS-PLKGKQRVFHHLILVGIYQLSFMR-IPPHAAVGETVEGAQDLKG 107 Query: 140 GDEPKFINAVLDKVSRKEEI 159 INAVL R ++ Sbjct: 108 PRLRGLINAVLRNYQRNQDA 127 >gi|294930141|ref|XP_002779491.1| hypothetical protein Pmar_PMAR025058 [Perkinsus marinus ATCC 50983] gi|239888679|gb|EER11286.1| hypothetical protein Pmar_PMAR025058 [Perkinsus marinus ATCC 50983] Length = 294 Score = 43.2 bits (101), Expect = 0.014, Method: Composition-based stats. Identities = 8/27 (29%), Positives = 14/27 (51%) Query: 111 GVLELIECHSVPVEVIISEYVCIAHDF 137 EL+ +P V+I+E +A +F Sbjct: 2 AAFELLNHQHIPTTVVINEANSLAKEF 28 >gi|209693697|ref|YP_002261625.1| ribosomal RNA small subunit methyltransferase B [Aliivibrio salmonicida LFI1238] gi|208007648|emb|CAQ77758.1| ribosomal RNA small subunit methyltransferase B [Aliivibrio salmonicida LFI1238] Length = 444 Score = 42.8 bits (100), Expect = 0.014, Method: Composition-based stats. Identities = 24/139 (17%), Positives = 47/139 (33%), Gaps = 16/139 (11%) Query: 20 RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79 R AA + +YQ+ G S + + +S D + I +GV+ Sbjct: 22 RAAAAKVIYQVVDQGHSLSSAL-------------PKAQSEIKPRDQALLQEICYGVLRF 68 Query: 80 KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139 ++ + S + + + ++ G+ +L +P + E V + Sbjct: 69 LPRLESVAQSLMDK--PLKGKQRVFHHLILVGIYQLSFMR-IPAHAAVGETVEGTKNLKG 125 Query: 140 GDEPKFINAVLDKVSRKEE 158 IN VL R +E Sbjct: 126 PKLRGLINGVLRSYQRSQE 144 >gi|163739806|ref|ZP_02147213.1| Fmu (Sun) [Phaeobacter gallaeciensis BS107] gi|161386840|gb|EDQ11202.1| Fmu (Sun) [Phaeobacter gallaeciensis BS107] Length = 421 Score = 42.8 bits (100), Expect = 0.014, Method: Composition-based stats. Identities = 25/139 (17%), Positives = 47/139 (33%), Gaps = 20/139 (14%) Query: 17 GIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGV 76 AR A+ L E++ E + C + + + Sbjct: 5 TQARRRAIHLL----------DEVLGEGKLLSEC--YAAGALDKLPAEERARTQRLATDT 52 Query: 77 MDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCI-AH 135 + + D ++ L + + + LR G +EL C +++E V I + Sbjct: 53 LRNLERADRILQKHLKKATPL-----TVHNALRIGTVEL--CQGGAAHGVVNEMVDIVSR 105 Query: 136 DFFYGDEPKFINAVLDKVS 154 +G +NAVL KV+ Sbjct: 106 HRRHGKLKGLVNAVLRKVA 124 >gi|269123621|ref|YP_003306198.1| Fmu (Sun) domain-containing protein [Streptobacillus moniliformis DSM 12112] gi|268314947|gb|ACZ01321.1| Fmu (Sun) domain protein [Streptobacillus moniliformis DSM 12112] Length = 422 Score = 42.8 bits (100), Expect = 0.015, Method: Composition-based stats. Identities = 24/122 (19%), Positives = 48/122 (39%), Gaps = 9/122 (7%) Query: 37 TTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWS 96 E+I E + Y + + Y + + +++ + +ID +I L S Sbjct: 11 LDEVI-ENKKYSNLQLKYMFENNSYTKGEKAFLNNMLNVTLKNLIYIDYVI---LKLARS 66 Query: 97 FSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRK 156 R ILR + +++ S + +I E V + + + FIN+ L RK Sbjct: 67 IKRKT---KQILRLSIAQILYT-STDIAGVIYEAVELGKE-ENIYQANFINSTLRNFIRK 121 Query: 157 EE 158 ++ Sbjct: 122 KD 123 >gi|228476962|ref|ZP_04061600.1| ribosomal RNA small subunit methyltransferase B [Streptococcus salivarius SK126] gi|228250981|gb|EEK10152.1| ribosomal RNA small subunit methyltransferase B [Streptococcus salivarius SK126] Length = 440 Score = 42.8 bits (100), Expect = 0.015, Method: Composition-based stats. Identities = 28/142 (19%), Positives = 55/142 (38%), Gaps = 15/142 (10%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 + AR A++ L E+ E + L +S D I++G Sbjct: 6 KKTARGQALEVL----------EEVFQEGAYSNIALNAHLS-KSQLTDKDKALVTEIVYG 54 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135 + K + I + + E +L+ + +L + +L +P ++++ V IA Sbjct: 55 TVAHKITL-EWILAHVIEDR--DKLEPWVYDLLLLSLYQLAYLDKIPAHAVVNDAVAIAK 111 Query: 136 DFFYGDEP-KFINAVLDKVSRK 156 + K +NAVL K+S + Sbjct: 112 NRGNKKGAEKLVNAVLRKLSSQ 133 >gi|254780666|ref|YP_003065079.1| Fmu (Sun) domain protein [Candidatus Liberibacter asiaticus str. psy62] gi|254040343|gb|ACT57139.1| Fmu (Sun) domain protein [Candidatus Liberibacter asiaticus str. psy62] Length = 445 Score = 42.8 bits (100), Expect = 0.015, Method: Composition-based stats. Identities = 22/100 (22%), Positives = 38/100 (38%), Gaps = 10/100 (10%) Query: 62 LHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSV 121 D R I++ + ID ++ L S R L +LR V +++ Sbjct: 42 SQRDQILVRAIVNVTLRFLPRIDAVLDFVLIS--SLPRKKYSLQQLLRVSVAQILYLDVA 99 Query: 122 PVEVIISEYVCIAHDFFYGDE----PKFINAVLDKVSRKE 157 V+ V A E K +N++L +VSR++ Sbjct: 100 DYAVV-DLAVEQAKR---DKENRHFAKLVNSILRRVSREK 135 >gi|271502215|ref|YP_003335241.1| sun protein [Dickeya dadantii Ech586] gi|270345770|gb|ACZ78535.1| sun protein [Dickeya dadantii Ech586] Length = 431 Score = 42.8 bits (100), Expect = 0.015, Method: Composition-based stats. Identities = 22/139 (15%), Positives = 50/139 (35%), Gaps = 3/139 (2%) Query: 32 IIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCL 91 + + T ++ E + + ++ D + I GV+ +D + + Sbjct: 7 LRSIAATTLLQVVEQGQSLSQLLPALQRDISERDRGLLQEICFGVLRVLPQLDWYLRQLM 66 Query: 92 TEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLD 151 + + +L +L G+ +LI +P ++E V A IN VL Sbjct: 67 AK--PLTGKQKVLHYLLMVGLYQLIHTR-IPPHAALAETVNGAVALKRPQLKGLINGVLR 123 Query: 152 KVSRKEEIKRSGCVSAITQ 170 + R++E + + + Sbjct: 124 QFQREQEALQQRLQNNPAR 142 >gi|147795869|emb|CAN61042.1| hypothetical protein VITISV_037527 [Vitis vinifera] Length = 360 Score = 42.8 bits (100), Expect = 0.015, Method: Composition-based stats. Identities = 21/127 (16%), Positives = 38/127 (29%), Gaps = 37/127 (29%) Query: 66 LEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFS---RLDMILCSILRAGVLELIECHSVP 122 + R ++ V+D+ L+I W R+ + IL + E+ Sbjct: 221 RSFTRKLLVAVVDKWNSHVLVIDKVAPPNWKNEPAGRI--LELCILHLAMSEI-AVLGTR 277 Query: 123 VEVIISE-------------------------------YVCIAHDFFYGDEPKFINAVLD 151 +++I+E V +A F G P+ IN L Sbjct: 278 HQIVINEVNSFSFSLSFSHDLPVKCISTSLTLIWLLMKAVDLAKRFCDGAAPRIINGCLR 337 Query: 152 KVSRKEE 158 + E Sbjct: 338 TFVKDLE 344 >gi|296104996|ref|YP_003615142.1| 16S rRNA methyltransferase B [Enterobacter cloacae subsp. cloacae ATCC 13047] gi|295059455|gb|ADF64193.1| 16S rRNA methyltransferase B [Enterobacter cloacae subsp. cloacae ATCC 13047] Length = 438 Score = 42.8 bits (100), Expect = 0.015, Method: Composition-based stats. Identities = 24/144 (16%), Positives = 54/144 (37%), Gaps = 16/144 (11%) Query: 15 RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74 ++ R A QA+ Q+ G S + ++ ++ D + + Sbjct: 12 KKQNLRSLAAQAVEQVVEQGQSLSNVL-------------PPLQQKVSDKDKALLQELCF 58 Query: 75 GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134 GV+ ++ LI+ ++ + + + ++ G +L+ +P ++E V A Sbjct: 59 GVLRTLSQLEWLINKLMSRPMTGKQ--RTVHYLIMVGFYQLLHTR-IPPHAALAETVEGA 115 Query: 135 HDFFYGDEPKFINAVLDKVSRKEE 158 IN VL + R++E Sbjct: 116 VAIKRPQLKGLINGVLRQFQRQQE 139 >gi|146337494|ref|YP_001202542.1| putative ribosomal RNA small subunit methyltransferase B [Bradyrhizobium sp. ORS278] gi|146190300|emb|CAL74296.1| putative Ribosomal RNA small subunit methyltransferase B (rRNA (cytosine-C(5)-)-methyltransferase) (16S rRNA m5C967 methyltransferase)(rsmB) [Bradyrhizobium sp. ORS278] Length = 450 Score = 42.8 bits (100), Expect = 0.016, Method: Composition-based stats. Identities = 21/129 (16%), Positives = 41/129 (31%), Gaps = 14/129 (10%) Query: 37 TTEIISEYETYRFCADTELDVESVYL------HVDLEWFRVIIHGVMDRKQHIDLLISSC 90 ++I D +LD + D R ++ + R + ++S Sbjct: 21 AADVIDGVLHKHRTLDDQLDGPGAHPGLKQLADRDRALMRRLVATTLRRLGTLGNVLSRL 80 Query: 91 LTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKF---IN 147 L S L G +++ VP + V + K+ +N Sbjct: 81 LDRGIPTD--APRAQSALLIGAAQILWM-DVPDHAAVDLSVRLVQA--DRRAAKYAGLVN 135 Query: 148 AVLDKVSRK 156 AVL + +R+ Sbjct: 136 AVLRRCARE 144 >gi|319407809|emb|CBI81460.1| SUN-family protein [Bartonella sp. 1-1C] Length = 456 Score = 42.8 bits (100), Expect = 0.016, Method: Composition-based stats. Identities = 19/100 (19%), Positives = 36/100 (36%), Gaps = 8/100 (8%) Query: 65 DLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVE 124 D R I+ + + I + +S L L +L + +++ +P Sbjct: 58 DRLLCRAILGAALRHRSQITVALSRFLVR--PLPAQAFSLHHLLHISITQILY-LDIPDH 114 Query: 125 VIISEYVCIAHDFFYGDEPKF---INAVLDKVSRKEEIKR 161 I V +A +F +NA+L +R+ I R Sbjct: 115 AAIDLAVRVAKI--DPRMRRFSGLVNAILRNFAREAPILR 152 >gi|16762874|ref|NP_458491.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica serovar Typhi str. CT18] gi|29144361|ref|NP_807703.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|213425783|ref|ZP_03358533.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica serovar Typhi str. E02-1180] gi|213859535|ref|ZP_03385239.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica serovar Typhi str. M223] gi|289806045|ref|ZP_06536674.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica serovar Typhi str. AG3] gi|46396982|sp|Q8Z1X1|RSMB_SALTI RecName: Full=Ribosomal RNA small subunit methyltransferase B; AltName: Full=16S rRNA m5C967 methyltransferase; AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase rsmB gi|25303750|pir||AH1009 sun protein [imported] - Salmonella enterica subsp. enterica serovar Typhi (strain CT18) gi|16505181|emb|CAD09177.1| sun protein [Salmonella enterica subsp. enterica serovar Typhi] gi|29139999|gb|AAO71563.1| sun protein [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] Length = 429 Score = 42.8 bits (100), Expect = 0.016, Method: Composition-based stats. Identities = 20/130 (15%), Positives = 49/130 (37%), Gaps = 3/130 (2%) Query: 29 QIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLIS 88 Q ++ + + E + ++ ++ D + + GV+ ++ LI+ Sbjct: 4 QNNLRSLAAQAVELVVEQGQSLSNVLPPLQQKVADKDKALLQELCFGVLRTLSQLEWLIN 63 Query: 89 SCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINA 148 ++ + + + ++ G +L+ VP ++E V A IN Sbjct: 64 KLMSRPMTGKQ--RTVHYLIMVGFYQLLYTR-VPPHAALAETVEGAVSIKRPQLKGLING 120 Query: 149 VLDKVSRKEE 158 VL + R++E Sbjct: 121 VLRQFQRQQE 130 >gi|296114107|ref|YP_003628045.1| 16S rRNA m5C967 SAM-dependent methyltransferase [Moraxella catarrhalis RH4] gi|295921801|gb|ADG62152.1| 16S rRNA m5C967 SAM-dependent methyltransferase [Moraxella catarrhalis RH4] Length = 448 Score = 42.8 bits (100), Expect = 0.017, Method: Composition-based stats. Identities = 17/121 (14%), Positives = 41/121 (33%), Gaps = 11/121 (9%) Query: 40 IISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSR 99 +I E + ++ + + ++ G + + + IS L E Sbjct: 22 VIEEILNGKSLSELLDPLLKSTEMSSRGFAHELLLGTLRQWWAL-SRISESLIEN----- 75 Query: 100 LDMILC---SILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRK 156 + + + G+ +LI ++P I++ V +NA+L K + Sbjct: 76 -PVTDQGVQAAINIGLYQLIYM-NIPEYAAINDTVEALKQLGKEYGTGLVNAILRKTQKS 133 Query: 157 E 157 + Sbjct: 134 K 134 >gi|283480068|emb|CAY75984.1| Ribosomal RNA small subunit methyltransferase B [Erwinia pyrifoliae DSM 12163] Length = 456 Score = 42.8 bits (100), Expect = 0.017, Method: Composition-based stats. Identities = 17/130 (13%), Positives = 50/130 (38%), Gaps = 12/130 (9%) Query: 32 IIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCL 91 I + +++ + ++ ++ + D + + +GV+ ++ +IS + Sbjct: 37 IAARTIEQVVEQGQS---LSNVLPAAQKSVGDKDAALLQELCYGVLRTLPQLEWIISKLM 93 Query: 92 TEKWSFSRLDMILCS---ILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINA 148 + + + ++ G+ +L+ +P ++E V A IN Sbjct: 94 SRP-----MTGKQRALHFLIMVGLYQLMFTR-IPPHAALAETVEAAVALKRPQLKGLING 147 Query: 149 VLDKVSRKEE 158 VL + R+++ Sbjct: 148 VLRQFQRQQD 157 >gi|258626112|ref|ZP_05720963.1| sun protein [Vibrio mimicus VM603] gi|258581638|gb|EEW06536.1| sun protein [Vibrio mimicus VM603] Length = 438 Score = 42.8 bits (100), Expect = 0.017, Method: Composition-based stats. Identities = 31/139 (22%), Positives = 49/139 (35%), Gaps = 16/139 (11%) Query: 20 RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79 R AA LYQ+ +G S + + + D + I +GV+ + Sbjct: 16 RAAAASVLYQVVDLGQSLSNAL-------------PAAQQQIRPRDHALLQEICYGVLRQ 62 Query: 80 KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139 + IS L EK + ++ G+ +L +P + E V A D Sbjct: 63 LPRL-ESISQALMEK-PLKGKQRVFHFLILVGLYQLSFMR-IPAHAAVGETVEGAQDLKG 119 Query: 140 GDEPKFINAVLDKVSRKEE 158 INAVL R +E Sbjct: 120 PRLRGLINAVLRNYQRDQE 138 >gi|315178589|gb|ADT85503.1| cytosine-C5-methylase [Vibrio furnissii NCTC 11218] Length = 426 Score = 42.8 bits (100), Expect = 0.017, Method: Composition-based stats. Identities = 26/140 (18%), Positives = 47/140 (33%), Gaps = 16/140 (11%) Query: 20 RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79 R AA Q L+Q+ G S + + + D + I +G + Sbjct: 4 RAAAAQVLFQVVDKGQSLSMAL-------------PAAQQNIRPRDHALLQEICYGALRY 50 Query: 80 KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139 + I++ L + + ++ G+ +L +P + E V A D Sbjct: 51 LPRL-ESIANALMDS-PLKGKQRVFHHLILVGIYQLSFMR-IPPHAAVGETVEGAQDLKG 107 Query: 140 GDEPKFINAVLDKVSRKEEI 159 INAVL R ++ Sbjct: 108 PRLRGLINAVLRNYQRNQDA 127 >gi|289824193|ref|ZP_06543788.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica serovar Typhi str. E98-3139] Length = 403 Score = 42.8 bits (100), Expect = 0.017, Method: Composition-based stats. Identities = 20/130 (15%), Positives = 49/130 (37%), Gaps = 3/130 (2%) Query: 29 QIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLIS 88 Q ++ + + E + ++ ++ D + + GV+ ++ LI+ Sbjct: 4 QNNLRSLAAQAVELVVEQGQSLSNVLPPLQQKVADKDKALLQELCFGVLRTLSQLEWLIN 63 Query: 89 SCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINA 148 ++ + + + ++ G +L+ VP ++E V A IN Sbjct: 64 KLMSRPMTGKQ--RTVHYLIMVGFYQLLYTR-VPPHAALAETVEGAVSIKRPQLKGLING 120 Query: 149 VLDKVSRKEE 158 VL + R++E Sbjct: 121 VLRQFQRQQE 130 >gi|15640076|ref|NP_229703.1| sun protein [Vibrio cholerae O1 biovar El Tor str. N16961] gi|121587275|ref|ZP_01677048.1| sun protein [Vibrio cholerae 2740-80] gi|121727862|ref|ZP_01680921.1| sun protein [Vibrio cholerae V52] gi|147675284|ref|YP_001218368.1| sun protein [Vibrio cholerae O395] gi|153817606|ref|ZP_01970273.1| sun protein [Vibrio cholerae NCTC 8457] gi|227080281|ref|YP_002808832.1| sun protein [Vibrio cholerae M66-2] gi|298501227|ref|ZP_07011026.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholerae MAK 757] gi|46397040|sp|Q9KVU5|RSMB_VIBCH RecName: Full=Ribosomal RNA small subunit methyltransferase B; AltName: Full=16S rRNA m5C967 methyltransferase; AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase rsmB gi|9654437|gb|AAF93222.1| sun protein [Vibrio cholerae O1 biovar El Tor str. N16961] gi|121548521|gb|EAX58577.1| sun protein [Vibrio cholerae 2740-80] gi|121629806|gb|EAX62221.1| sun protein [Vibrio cholerae V52] gi|126511874|gb|EAZ74468.1| sun protein [Vibrio cholerae NCTC 8457] gi|146317167|gb|ABQ21706.1| sun protein [Vibrio cholerae O395] gi|227008169|gb|ACP04381.1| sun protein [Vibrio cholerae M66-2] gi|227011953|gb|ACP08163.1| sun protein [Vibrio cholerae O395] gi|297540099|gb|EFH76161.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholerae MAK 757] Length = 434 Score = 42.8 bits (100), Expect = 0.017, Method: Composition-based stats. Identities = 30/139 (21%), Positives = 48/139 (34%), Gaps = 16/139 (11%) Query: 20 RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79 R AA ALYQ+ +G S + + + D + I +GV+ + Sbjct: 12 RAAAASALYQVVDLGHSLSNAL-------------PAAQQQIRPRDHALLQEICYGVLRQ 58 Query: 80 KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139 + IS L + ++ G+ +L +P + E V A D Sbjct: 59 LPRL-ESISQAL-MGKPLKGKQRVFHFLILVGLYQLSFMR-IPAHAAVGETVEGAQDLKG 115 Query: 140 GDEPKFINAVLDKVSRKEE 158 INAVL R +E Sbjct: 116 PRLRGLINAVLRNYQRDQE 134 >gi|197334196|ref|YP_002157328.1| ribosomal RNA small subunit methyltransferase B [Vibrio fischeri MJ11] gi|197315686|gb|ACH65133.1| ribosomal RNA small subunit methyltransferase B [Vibrio fischeri MJ11] Length = 451 Score = 42.8 bits (100), Expect = 0.018, Method: Composition-based stats. Identities = 25/139 (17%), Positives = 49/139 (35%), Gaps = 16/139 (11%) Query: 20 RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79 R AA + +YQ+ G S + + +S D + I +GV+ Sbjct: 29 RAAAAKVIYQVVDQGHSLSSAL-------------PKAQSEIKPRDQALLQEICYGVLRF 75 Query: 80 KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139 ++ + S + + + ++ G+ +L +P ++E V + Sbjct: 76 LPRLESVAQSLMDK--PLKGKQRVFHHLILVGIYQLSFMR-IPAHAAVAETVEGTKNLKG 132 Query: 140 GDEPKFINAVLDKVSRKEE 158 INAVL R +E Sbjct: 133 PKLRGLINAVLRNYQRSQE 151 >gi|326571735|gb|EGE21748.1| 16S rRNA m5C967 SAM-dependent methyltransferase [Moraxella catarrhalis BC8] gi|326574350|gb|EGE24293.1| 16S rRNA m5C967 SAM-dependent methyltransferase [Moraxella catarrhalis CO72] Length = 448 Score = 42.8 bits (100), Expect = 0.018, Method: Composition-based stats. Identities = 17/121 (14%), Positives = 41/121 (33%), Gaps = 11/121 (9%) Query: 40 IISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSR 99 +I E + ++ + + ++ G + + + IS L E Sbjct: 22 VIEEILNGKSLSELLDPLLESTEMSSRGFVHELLLGTLRQWWAL-SRISESLIEN----- 75 Query: 100 LDMILC---SILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRK 156 + + + G+ +LI ++P I++ V +NA+L K + Sbjct: 76 -PVTDQGVQAAINIGLYQLIYM-NIPEYAAINDTVEALKQLGKEYGTGLVNAILRKTQKS 133 Query: 157 E 157 + Sbjct: 134 K 134 >gi|326561732|gb|EGE12067.1| 16S rRNA m5C967 SAM-dependent methyltransferase [Moraxella catarrhalis 7169] gi|326562326|gb|EGE12652.1| 16S rRNA m5C967 SAM-dependent methyltransferase [Moraxella catarrhalis 103P14B1] gi|326569046|gb|EGE19115.1| 16S rRNA m5C967 SAM-dependent methyltransferase [Moraxella catarrhalis BC1] gi|326571810|gb|EGE21816.1| 16S rRNA m5C967 SAM-dependent methyltransferase [Moraxella catarrhalis BC7] gi|326575530|gb|EGE25455.1| 16S rRNA m5C967 SAM-dependent methyltransferase [Moraxella catarrhalis 101P30B1] Length = 448 Score = 42.8 bits (100), Expect = 0.018, Method: Composition-based stats. Identities = 17/121 (14%), Positives = 41/121 (33%), Gaps = 11/121 (9%) Query: 40 IISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSR 99 +I E + ++ + + ++ G + + + IS L E Sbjct: 22 VIEEILNGKSLSELLDPLLESTEMSSRGFVHELLLGTLRQWWAL-SRISESLIEN----- 75 Query: 100 LDMILC---SILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRK 156 + + + G+ +LI ++P I++ V +NA+L K + Sbjct: 76 -PVTDQGVQAAINIGLYQLIYM-NIPEYAAINDTVEALKQLGKEYGTGLVNAILRKTQKS 133 Query: 157 E 157 + Sbjct: 134 K 134 >gi|213025104|ref|ZP_03339551.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica serovar Typhi str. 404ty] Length = 153 Score = 42.8 bits (100), Expect = 0.018, Method: Composition-based stats. Identities = 20/130 (15%), Positives = 49/130 (37%), Gaps = 3/130 (2%) Query: 29 QIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLIS 88 Q ++ + + E + ++ ++ D + + GV+ ++ LI+ Sbjct: 4 QNNLRSLAAQAVELVVEQGQSLSNVLPPLQQKVADKDKALLQELCFGVLRTLSQLEWLIN 63 Query: 89 SCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINA 148 ++ + + + ++ G +L+ VP ++E V A IN Sbjct: 64 KLMSRPMTGKQ--RTVHYLIMVGFYQLLYTR-VPPHAALAETVEGAVSIKRPQLKGLING 120 Query: 149 VLDKVSRKEE 158 VL + R++E Sbjct: 121 VLRQFQRQQE 130 >gi|153821915|ref|ZP_01974582.1| sun protein [Vibrio cholerae B33] gi|254851609|ref|ZP_05240959.1| sun protein [Vibrio cholerae MO10] gi|126520535|gb|EAZ77758.1| sun protein [Vibrio cholerae B33] gi|254847314|gb|EET25728.1| sun protein [Vibrio cholerae MO10] Length = 434 Score = 42.8 bits (100), Expect = 0.018, Method: Composition-based stats. Identities = 30/139 (21%), Positives = 48/139 (34%), Gaps = 16/139 (11%) Query: 20 RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79 R AA ALYQ+ +G S + + + D + I +GV+ + Sbjct: 12 RAAAASALYQVVDLGHSLSNAL-------------PAAQQQIRPRDHALLQEICYGVLRQ 58 Query: 80 KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139 + IS L + ++ G+ +L +P + E V A D Sbjct: 59 LPRL-ESISQAL-MGKPLKGKQRVFHFLILVGLYQLSFMR-IPAHAAVGETVEGAQDLKG 115 Query: 140 GDEPKFINAVLDKVSRKEE 158 INAVL R +E Sbjct: 116 PRLRGLINAVLRNYQRDQE 134 >gi|213418736|ref|ZP_03351802.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica serovar Typhi str. E01-6750] Length = 197 Score = 42.8 bits (100), Expect = 0.018, Method: Composition-based stats. Identities = 20/130 (15%), Positives = 49/130 (37%), Gaps = 3/130 (2%) Query: 29 QIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLIS 88 Q ++ + + E + ++ ++ D + + GV+ ++ LI+ Sbjct: 4 QNNLRSLAAQAVELVVEQGQSLSNVLPPLQQKVADKDKALLQELCFGVLRTLSQLEWLIN 63 Query: 89 SCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINA 148 ++ + + + ++ G +L+ VP ++E V A IN Sbjct: 64 KLMSRPMTGKQ--RTVHYLIMVGFYQLLYTR-VPPHAALAETVEGAVSIKRPQLKGLING 120 Query: 149 VLDKVSRKEE 158 VL + R++E Sbjct: 121 VLRQFQRQQE 130 >gi|229508832|ref|ZP_04398323.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholerae B33] gi|229517103|ref|ZP_04406549.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholerae RC9] gi|229606604|ref|YP_002877252.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholerae MJ-1236] gi|255746774|ref|ZP_05420720.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholera CIRS 101] gi|229346166|gb|EEO11138.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholerae RC9] gi|229354107|gb|EEO19039.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholerae B33] gi|229369259|gb|ACQ59682.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholerae MJ-1236] gi|255735531|gb|EET90930.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholera CIRS 101] Length = 426 Score = 42.4 bits (99), Expect = 0.019, Method: Composition-based stats. Identities = 30/139 (21%), Positives = 48/139 (34%), Gaps = 16/139 (11%) Query: 20 RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79 R AA ALYQ+ +G S + + + D + I +GV+ + Sbjct: 4 RAAAASALYQVVDLGHSLSNAL-------------PAAQQQIRPRDHALLQEICYGVLRQ 50 Query: 80 KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139 + IS L + ++ G+ +L +P + E V A D Sbjct: 51 LPRL-ESISQAL-MGKPLKGKQRVFHFLILVGLYQLSFMR-IPAHAAVGETVEGAQDLKG 107 Query: 140 GDEPKFINAVLDKVSRKEE 158 INAVL R +E Sbjct: 108 PRLRGLINAVLRNYQRDQE 126 >gi|156932266|ref|YP_001436182.1| 16S rRNA methyltransferase B [Cronobacter sakazakii ATCC BAA-894] gi|224493253|sp|A7MPE7|RSMB_ENTS8 RecName: Full=Ribosomal RNA small subunit methyltransferase B; AltName: Full=16S rRNA m5C967 methyltransferase; AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase rsmB gi|156530520|gb|ABU75346.1| hypothetical protein ESA_00037 [Cronobacter sakazakii ATCC BAA-894] Length = 429 Score = 42.4 bits (99), Expect = 0.020, Method: Composition-based stats. Identities = 24/142 (16%), Positives = 52/142 (36%), Gaps = 22/142 (15%) Query: 20 RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79 R A QA+ Q+ G S + ++ ++ D + + GV+ Sbjct: 8 RSLAAQAIEQVVEKGQSLSTVL-------------PPLQHKVSDKDKALLQELCFGVLRT 54 Query: 80 KQHIDLLISSCLTEKWSFSRLDMILCSI---LRAGVLELIECHSVPVEVIISEYVCIAHD 136 ++ LI+ ++ + +I + G+ +L+ +P ++E V A Sbjct: 55 LSQLEWLINKLMSRP-----MTGKQRTIHYLIMVGLYQLLYTR-IPPHAALAETVEGAVA 108 Query: 137 FFYGDEPKFINAVLDKVSRKEE 158 IN VL + R+++ Sbjct: 109 IKRMQFKGLINGVLRQFQRQQD 130 >gi|229508329|ref|ZP_04397833.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholerae BX 330286] gi|262155855|ref|ZP_06028977.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholerae INDRE 91/1] gi|262166898|ref|ZP_06034619.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholerae RC27] gi|229354602|gb|EEO19524.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholerae BX 330286] gi|262024669|gb|EEY43349.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholerae RC27] gi|262030307|gb|EEY48949.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholerae INDRE 91/1] Length = 426 Score = 42.4 bits (99), Expect = 0.020, Method: Composition-based stats. Identities = 30/139 (21%), Positives = 48/139 (34%), Gaps = 16/139 (11%) Query: 20 RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79 R AA ALYQ+ +G S + + + D + I +GV+ + Sbjct: 4 RAAAASALYQVVDLGHSLSNAL-------------PAAQQQIRPRDHALLQEICYGVLRQ 50 Query: 80 KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139 + IS L + ++ G+ +L +P + E V A D Sbjct: 51 LPRL-ESISQAL-MGKPLKGKQRVFHFLILVGLYQLSFMR-IPAHAAVGETVEGAQDLKG 107 Query: 140 GDEPKFINAVLDKVSRKEE 158 INAVL R +E Sbjct: 108 PRLRGLINAVLRNYQRDQE 126 >gi|119943873|ref|YP_941553.1| sun protein [Psychromonas ingrahamii 37] gi|119862477|gb|ABM01954.1| sun protein [Psychromonas ingrahamii 37] Length = 436 Score = 42.4 bits (99), Expect = 0.020, Method: Composition-based stats. Identities = 22/109 (20%), Positives = 39/109 (35%), Gaps = 13/109 (11%) Query: 55 LDVESVYLHVDLEWFRVIIHGVMDRKQHID----LLISSCLT-EKWSFSRLDMILCSILR 109 V+ D +V+ +GV+ +D L+ L ++ L IL Sbjct: 26 PPVQQDLSPKDKALLQVLCYGVLRTLPRLDFFCRSLMDKALKGKQRDLHFL------IL- 78 Query: 110 AGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEE 158 G +L+ +P + E V A + +N VL R++E Sbjct: 79 VGFYQLLYTR-IPSHAAVGETVNGAKELKKQALKGMVNGVLRNFLREQE 126 >gi|326563104|gb|EGE13377.1| 16S rRNA m5C967 SAM-dependent methyltransferase [Moraxella catarrhalis 12P80B1] Length = 448 Score = 42.4 bits (99), Expect = 0.020, Method: Composition-based stats. Identities = 17/121 (14%), Positives = 41/121 (33%), Gaps = 11/121 (9%) Query: 40 IISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSR 99 +I E + ++ + + ++ G + + + IS L E Sbjct: 22 VIEEILNGKSLSELLDPLLESTEMSSRGFVHELLLGTLRQWWAL-SRISESLIEN----- 75 Query: 100 LDMILC---SILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRK 156 + + + G+ +LI ++P I++ V +NA+L K + Sbjct: 76 -PVTDQGVQAAINIGLYQLIYM-NIPEYAAINDTVEALKQLGKEYGTGLVNAILRKTQKS 133 Query: 157 E 157 + Sbjct: 134 K 134 >gi|227504402|ref|ZP_03934451.1| possible rRNA SAM-dependent methyltransferase RmsB [Corynebacterium striatum ATCC 6940] gi|227199050|gb|EEI79098.1| possible rRNA SAM-dependent methyltransferase RmsB [Corynebacterium striatum ATCC 6940] Length = 506 Score = 42.4 bits (99), Expect = 0.021, Method: Composition-based stats. Identities = 28/179 (15%), Positives = 57/179 (31%), Gaps = 30/179 (16%) Query: 4 QDNKKDLKLSHRRGIARLAA--VQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVY 61 ++N ++ R A+ VQA G T +S +E R + Sbjct: 38 KNNSRNSHHPRGRRGAQEKNSFVQA---ARRSGVDTARAVS-FEVLRRVHSDDAFANLTL 93 Query: 62 LHV---------DLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGV 112 D + + +G + + +D +I C + + + + LR G Sbjct: 94 PKALRVHKLEGRDAAFATELTYGSLRTEGVLDAVIGECSSR--ALDAIAPEVLDALRLGA 151 Query: 113 LELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAV------------LDKVSRKEEI 159 +++ P + V + + F N + LDK++ + EI Sbjct: 152 YQVLFTRVEPHA-AVDTTVRLVEAADFEKAKGFANGIMRTITRTPAEKWLDKLAPQGEI 209 >gi|59713152|ref|YP_205928.1| 16S rRNA m5C967 methyltransferase, S-adenosyl-L-methionine-dependent [Vibrio fischeri ES114] gi|59481253|gb|AAW87040.1| 16S rRNA m5C967 methyltransferase, S-adenosyl-L-methionine-dependent [Vibrio fischeri ES114] Length = 426 Score = 42.4 bits (99), Expect = 0.021, Method: Composition-based stats. Identities = 25/139 (17%), Positives = 49/139 (35%), Gaps = 16/139 (11%) Query: 20 RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79 R AA + +YQ+ G S + + +S D + I +GV+ Sbjct: 4 RAAAAKVIYQVVDQGHSLSSAL-------------PKAQSEIKPRDQALLQEICYGVLRF 50 Query: 80 KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139 ++ + S + + + ++ G+ +L +P ++E V + Sbjct: 51 LPRLESVAQSLMDK--PLKGKQRVFHHLILVGIYQLSFMR-IPAHAAVAETVEGTKNLKG 107 Query: 140 GDEPKFINAVLDKVSRKEE 158 INAVL R +E Sbjct: 108 PKLRGLINAVLRNYQRSQE 126 >gi|254476801|ref|ZP_05090187.1| Fmu [Ruegeria sp. R11] gi|214031044|gb|EEB71879.1| Fmu [Ruegeria sp. R11] Length = 420 Score = 42.4 bits (99), Expect = 0.021, Method: Composition-based stats. Identities = 21/98 (21%), Positives = 38/98 (38%), Gaps = 10/98 (10%) Query: 59 SVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIEC 118 D + + + + D ++ L + ++ + LR G +EL C Sbjct: 35 DKLAPEDRARAQRLAADTLRNLERADRVLQKHLKKSTPL-----MVHNALRIGTVEL--C 87 Query: 119 HSVPVEVIISEYVCI--AHDFFYGDEPKFINAVLDKVS 154 +++E V I AH +G +NAVL KV+ Sbjct: 88 QGGAAHGVVNEMVNIVAAHK-RHGKLKGLVNAVLRKVA 124 >gi|443991|emb|CAA54369.1| fmu [Escherichia coli K-12] Length = 238 Score = 42.4 bits (99), Expect = 0.021, Method: Composition-based stats. Identities = 21/133 (15%), Positives = 50/133 (37%), Gaps = 9/133 (6%) Query: 29 QIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLIS 88 Q ++ + + E + ++ ++ D + + GV+ +D LI+ Sbjct: 4 QRNLRSMAAQAVEQVVEQGQSLSNILPPLQQKVSDKDKALLQELCFGVLRTLSQLDWLIN 63 Query: 89 SCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVC--IA-HDFFYGDEPKF 145 + + + + ++ G+ +L+ +P ++E V IA Sbjct: 64 KLMARPMTGKQ--RTVHYLIMVGLYQLLYTR-IPPHAALAETVERRIAIKR---PQLKGL 117 Query: 146 INAVLDKVSRKEE 158 IN VL + R++E Sbjct: 118 INGVLRQFQRQQE 130 >gi|90413777|ref|ZP_01221765.1| Putative Sun protein [Photobacterium profundum 3TCK] gi|90325246|gb|EAS41743.1| Putative Sun protein [Photobacterium profundum 3TCK] Length = 431 Score = 42.4 bits (99), Expect = 0.021, Method: Composition-based stats. Identities = 26/139 (18%), Positives = 50/139 (35%), Gaps = 16/139 (11%) Query: 20 RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79 R AA Q ++Q+ G S + + + D + I +GV+ Sbjct: 4 RAAAAQVVFQVVDQGQSLSAAL-------------PAAQQNIRERDHALLQEICYGVLRW 50 Query: 80 KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139 + I++ L +K + ++ G+ +L +P ++E V D Sbjct: 51 LPRL-ESITTHLMDK-PLKGKQRVFHHLILVGLYQLGHMR-IPAHAAVAETVNATKDLKK 107 Query: 140 GDEPKFINAVLDKVSRKEE 158 INA+L R++E Sbjct: 108 TQLRGLINAILRNYQRQQE 126 >gi|310765566|gb|ADP10516.1| Ribosomal RNA small subunit methyltransferase B [Erwinia sp. Ejp617] Length = 441 Score = 42.4 bits (99), Expect = 0.022, Method: Composition-based stats. Identities = 18/123 (14%), Positives = 45/123 (36%), Gaps = 9/123 (7%) Query: 39 EIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFS 98 I E + ++ + D + + +GV+ ++ +IS ++ Sbjct: 26 TIEQVVEQGQSLSNVLPAAQKSVGDKDAALLQELCYGVLRTLPQLEWIISKLMSRP---- 81 Query: 99 RLDMILCS---ILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSR 155 + + ++ G+ +L+ +P ++E V A IN VL + R Sbjct: 82 -MTGKQRALHFLIMVGLYQLMFTR-IPPHAALAETVEAAVALKRPQLKGLINGVLRQFQR 139 Query: 156 KEE 158 +++ Sbjct: 140 QQD 142 >gi|322516391|ref|ZP_08069316.1| RNA methyltransferase Sun [Streptococcus vestibularis ATCC 49124] gi|322125124|gb|EFX96517.1| RNA methyltransferase Sun [Streptococcus vestibularis ATCC 49124] Length = 442 Score = 42.4 bits (99), Expect = 0.022, Method: Composition-based stats. Identities = 33/152 (21%), Positives = 60/152 (39%), Gaps = 20/152 (13%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 + AR A++ L E+ E + L +S D I++G Sbjct: 8 KKTARGQALEVL----------EEVFQEGAYSNIALNAHLS-KSYLTDKDKALVTEIVYG 56 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135 + RK + I + + E +L+ + +L + +L +P ++++ V IA Sbjct: 57 TVARKITL-EWILAHVIEDR--DKLEPWVYDLLLLSLYQLAYLDKIPAHAVVNDAVSIAK 113 Query: 136 DFFYGDEP-KFINAVLDKVSRKE-----EIKR 161 + K +NAVL K+S + EIKR Sbjct: 114 NRGNKKGAEKLVNAVLRKLSSQPLPDPSEIKR 145 >gi|237806927|ref|YP_002891367.1| sun protein [Tolumonas auensis DSM 9187] gi|237499188|gb|ACQ91781.1| sun protein [Tolumonas auensis DSM 9187] Length = 433 Score = 42.4 bits (99), Expect = 0.024, Method: Composition-based stats. Identities = 29/135 (21%), Positives = 49/135 (36%), Gaps = 15/135 (11%) Query: 30 IDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHI----DL 85 + I + I E + + + + D + I +G + + D Sbjct: 1 MKIRATAAKVIFQVVEQGQSLSSALPVAQQLIAAKDRALLQEICYGTLRWLNRLEFIADQ 60 Query: 86 LISSCLT-EKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDE-P 143 L+ L + S L IL AG+ +L +P +++E V A GD Sbjct: 61 LLDRQLKGKHRSLHYL------IL-AGLYQLFYTR-IPPHAVLAETVN-ASGLLNGDSFR 111 Query: 144 KFINAVLDKVSRKEE 158 K IN VL R++E Sbjct: 112 KLINGVLRNAQRQQE 126 >gi|326573497|gb|EGE23463.1| 16S rRNA m5C967 SAM-dependent methyltransferase [Moraxella catarrhalis O35E] Length = 448 Score = 42.4 bits (99), Expect = 0.024, Method: Composition-based stats. Identities = 15/83 (18%), Positives = 33/83 (39%), Gaps = 11/83 (13%) Query: 85 LLISSCLTEKWSFSRLD------MI----LCSILRAGVLELIECHSVPVEVIISEYVCIA 134 L+ L + W+ SR+ + + + + G+ +LI ++P I++ V Sbjct: 53 ELLLGTLRQWWALSRISESLIENPVTDQGVQAAINIGLYQLIYM-NIPEYAAINDTVEAL 111 Query: 135 HDFFYGDEPKFINAVLDKVSRKE 157 +NA+L K + + Sbjct: 112 KQLGKEYGTGLVNAILRKTQKSK 134 >gi|326560689|gb|EGE11057.1| 16S rRNA m5C967 SAM-dependent methyltransferase [Moraxella catarrhalis 46P47B1] Length = 448 Score = 42.4 bits (99), Expect = 0.024, Method: Composition-based stats. Identities = 15/83 (18%), Positives = 33/83 (39%), Gaps = 11/83 (13%) Query: 85 LLISSCLTEKWSFSRLD------MI----LCSILRAGVLELIECHSVPVEVIISEYVCIA 134 L+ L + W+ SR+ + + + + G+ +LI ++P I++ V Sbjct: 53 ELLLGTLRQWWALSRISESLIENPVTDQGVQAAINIGLYQLIYM-NIPEYAAINDTVEAL 111 Query: 135 HDFFYGDEPKFINAVLDKVSRKE 157 +NA+L K + + Sbjct: 112 KQLGKEYGTGLVNAILRKTQKSK 134 >gi|259909968|ref|YP_002650324.1| 16S rRNA methyltransferase B [Erwinia pyrifoliae Ep1/96] gi|224965590|emb|CAX57122.1| 16S rRNA methyltransferase B [Erwinia pyrifoliae Ep1/96] Length = 429 Score = 42.4 bits (99), Expect = 0.024, Method: Composition-based stats. Identities = 18/123 (14%), Positives = 45/123 (36%), Gaps = 9/123 (7%) Query: 39 EIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFS 98 I E + ++ + D + + +GV+ ++ +IS ++ Sbjct: 14 TIEQVVEQGQSLSNVLPAAQKSVGDKDAALLQELCYGVLRTLPQLEWIISKLMSRP---- 69 Query: 99 RLDMILCS---ILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSR 155 + + ++ G+ +L+ +P ++E V A IN VL + R Sbjct: 70 -MTGKQRALHFLIMVGLYQLMFTR-IPPHAALAETVEAAVALKRPQLKGLINGVLRQFQR 127 Query: 156 KEE 158 +++ Sbjct: 128 QQD 130 >gi|297180807|gb|ADI17013.1| tRNA and rRNA cytosine-c5-methylases [uncultured Vibrionales bacterium HF0010_22E23] Length = 426 Score = 42.0 bits (98), Expect = 0.025, Method: Composition-based stats. Identities = 26/147 (17%), Positives = 51/147 (34%), Gaps = 16/147 (10%) Query: 20 RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79 R A + ++Q+ G S T ++ + D + I +GV+ Sbjct: 4 RAMAAKVIFQVVDQGQSLTAVL-------------PKAQQQIADRDGALLQEICYGVLRW 50 Query: 80 KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139 + I+ L EK + + ++ G+ +L VP ++E V Sbjct: 51 LPRL-EAITQSLMEK-PLTGKQRVFHHLILVGLYQLNYMR-VPAHAAVAETVNATKPLKK 107 Query: 140 GDEPKFINAVLDKVSRKEEIKRSGCVS 166 +NAVL R+++ +S Sbjct: 108 PQLRGLVNAVLRNYQREQDALNEKAIS 134 >gi|283769599|ref|ZP_06342495.1| putative ribosomal RNA small subunit methyltransferase B [Bulleidia extructa W1219] gi|283103867|gb|EFC05253.1| putative ribosomal RNA small subunit methyltransferase B [Bulleidia extructa W1219] Length = 404 Score = 42.0 bits (98), Expect = 0.025, Method: Composition-based stats. Identities = 18/109 (16%), Positives = 44/109 (40%), Gaps = 11/109 (10%) Query: 55 LDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLE 114 L ++ + + + + +++G + + + + + +D+ +L + + Sbjct: 23 LSLKQLKIEGSIGFVTEVVYGTLRHYKLLQEQYKPFVKKIKKK--MDV----LLVMALYQ 76 Query: 115 LIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRSG 163 VP I++ V + E F+NAVL K+ + E I+ G Sbjct: 77 -HHFMKVPDYAIVNSTVELVKS----QEKGFVNAVLRKIFQSEWIEPMG 120 >gi|58040030|ref|YP_191994.1| rRNA methyltransferase RsmB [Gluconobacter oxydans 621H] gi|58002444|gb|AAW61338.1| rRNA methyltransferase RsmB [Gluconobacter oxydans 621H] Length = 447 Score = 42.0 bits (98), Expect = 0.027, Method: Composition-based stats. Identities = 21/120 (17%), Positives = 42/120 (35%), Gaps = 6/120 (5%) Query: 39 EIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFS 98 +I+ +R +T LD D + + + L+ L + Sbjct: 46 DIVCGVVEHRRMLETTLDRAGAMDARDRASAHRLAATTLRHLGSMTELLQPLLRREPP-- 103 Query: 99 RLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEE 158 + + C++L GV +L+ P + V + NAVL +V+R+ + Sbjct: 104 --EPVRCALL-MGVAQLLH-LETPPHAAVGTIVDLLRRRGLAPFAGLANAVLRRVAREGQ 159 >gi|325294195|ref|YP_004280059.1| SUN protein [Agrobacterium sp. H13-3] gi|325062048|gb|ADY65739.1| SUN protein [Agrobacterium sp. H13-3] Length = 461 Score = 42.0 bits (98), Expect = 0.027, Method: Composition-based stats. Identities = 30/151 (19%), Positives = 57/151 (37%), Gaps = 21/151 (13%) Query: 18 IARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTEL--DVESVYLHVDLEWFRVIIHG 75 AR+AA + L ++ + + D+E V D R I++ Sbjct: 37 AARVAATRIL----------AAVLEKKTSLDGMLDSENGNPVYRALSLADRALVRAIVNS 86 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135 + I+ +S L + L +L G +++ VP + V AH Sbjct: 87 ALRHLPRIEAALSMLLDG--PLPQGARSLHHVLVVGAAQVLH-LDVPDHSAVDLAVEQAH 143 Query: 136 DFFYGDEPKF---INAVLDKVSRKE-EIKRS 162 +F +NAVL ++ R++ EI+++ Sbjct: 144 R--DPRNRRFAKLVNAVLRRLGREKAEIEKA 172 >gi|229520215|ref|ZP_04409642.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholerae TM 11079-80] gi|229342809|gb|EEO07800.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholerae TM 11079-80] Length = 426 Score = 42.0 bits (98), Expect = 0.028, Method: Composition-based stats. Identities = 31/139 (22%), Positives = 49/139 (35%), Gaps = 16/139 (11%) Query: 20 RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79 R AA ALYQ+ +G S + + + D + I +GV+ + Sbjct: 4 RAAAASALYQVVDLGHSLSNAL-------------PAAQQQIRPRDHALLQEICYGVLRQ 50 Query: 80 KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139 + IS L EK + ++ G+ +L +P + E V D Sbjct: 51 LPRL-ESISQALMEK-PLKGKQRVFHFLILVGLYQLSFMR-IPAHAAVGETVEGTQDLKG 107 Query: 140 GDEPKFINAVLDKVSRKEE 158 INAVL R +E Sbjct: 108 PRLRGLINAVLRNYQRDQE 126 >gi|229104427|ref|ZP_04235096.1| Ribosomal RNA small subunit methyltransferase B [Bacillus cereus Rock3-28] gi|228679125|gb|EEL33333.1| Ribosomal RNA small subunit methyltransferase B [Bacillus cereus Rock3-28] Length = 354 Score = 42.0 bits (98), Expect = 0.028, Method: Composition-based stats. Identities = 10/35 (28%), Positives = 14/35 (40%) Query: 122 PVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRK 156 P I E V IA + +N VL + R+ Sbjct: 2 PERAAIHEAVEIAKRRGHKGISGMVNGVLRSIQRE 36 >gi|209883490|ref|YP_002287347.1| SUN protein [Oligotropha carboxidovorans OM5] gi|209871686|gb|ACI91482.1| SUN protein [Oligotropha carboxidovorans OM5] Length = 446 Score = 42.0 bits (98), Expect = 0.028, Method: Composition-based stats. Identities = 24/129 (18%), Positives = 45/129 (34%), Gaps = 14/129 (10%) Query: 37 TTEIISEYETYRFCADTELDVESVYL------HVDLEWFRVIIHGVMDRKQHIDLLISSC 90 +II R D +L+ + + D R ++ V+ R+ + L+S Sbjct: 21 AADIIDGVLHKRRTLDDQLEGAAQHPALKSLSDRDRALMRRLVATVLRRRGTLAYLLSRL 80 Query: 91 LTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKF---IN 147 L S L G +++ VP + V + K+ +N Sbjct: 81 LDRGVPSD--APRAQSALMIGAAQILWM-DVPDHAAVDLSVRLVQA--DRRAAKYAGLVN 135 Query: 148 AVLDKVSRK 156 AVL + +R+ Sbjct: 136 AVLRRCARE 144 >gi|229098334|ref|ZP_04229281.1| Ribosomal RNA small subunit methyltransferase B [Bacillus cereus Rock3-29] gi|229117351|ref|ZP_04246729.1| Ribosomal RNA small subunit methyltransferase B [Bacillus cereus Rock1-3] gi|228666251|gb|EEL21715.1| Ribosomal RNA small subunit methyltransferase B [Bacillus cereus Rock1-3] gi|228685232|gb|EEL39163.1| Ribosomal RNA small subunit methyltransferase B [Bacillus cereus Rock3-29] Length = 354 Score = 42.0 bits (98), Expect = 0.028, Method: Composition-based stats. Identities = 10/35 (28%), Positives = 14/35 (40%) Query: 122 PVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRK 156 P I E V IA + +N VL + R+ Sbjct: 2 PERAAIHEAVEIAKRRGHKGISGMVNGVLRSIQRE 36 >gi|226329514|ref|ZP_03805032.1| hypothetical protein PROPEN_03423 [Proteus penneri ATCC 35198] gi|225202700|gb|EEG85054.1| hypothetical protein PROPEN_03423 [Proteus penneri ATCC 35198] Length = 194 Score = 42.0 bits (98), Expect = 0.028, Method: Composition-based stats. Identities = 29/150 (19%), Positives = 56/150 (37%), Gaps = 19/150 (12%) Query: 10 LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF 69 +K S+ R A +A+ Q+ G S + +I E + D Sbjct: 1 MKTSYN---LRSIAAKAINQVLDQGLSLSTVIPEL-------------QKNISDKDKALL 44 Query: 70 RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISE 129 + I GV+ ++ +I + + IL ++ G+ +L+ +P ++E Sbjct: 45 QEICFGVLRTLPQLEWIIQQLMDK--PLKGKQRILHYLIMVGLYQLLYTR-IPAHAALAE 101 Query: 130 YVCIAHDFFYGDEPKFINAVLDKVSRKEEI 159 V A IN VL + R+++I Sbjct: 102 TVNGAVALKKPQLKGLINGVLRQFQRQQDI 131 >gi|115522058|ref|YP_778969.1| sun protein [Rhodopseudomonas palustris BisA53] gi|115516005|gb|ABJ03989.1| sun protein [Rhodopseudomonas palustris BisA53] Length = 449 Score = 42.0 bits (98), Expect = 0.029, Method: Composition-based stats. Identities = 21/131 (16%), Positives = 45/131 (34%), Gaps = 14/131 (10%) Query: 37 TTEIISEYETYRFCADTELDVESVYL------HVDLEWFRVIIHGVMDRKQHIDLLISSC 90 +I+ R D +LD + + D R ++ ++ + + ++S Sbjct: 21 AADILDGVLHKRRMLDDQLDGPAAHPGLKTLSDRDRALMRRLVATILRKLGTLGHVLSRL 80 Query: 91 LTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKF---IN 147 L S L G +++ VP + V + K+ +N Sbjct: 81 LDRGVPTD--APRAQSALLIGAAQILWM-EVPDHAAVDLSVRLVQ--SDRRAAKYAGLVN 135 Query: 148 AVLDKVSRKEE 158 AVL + +R+ + Sbjct: 136 AVLRRCAREGQ 146 >gi|222150167|ref|YP_002551124.1| Sun protein [Agrobacterium vitis S4] gi|221737149|gb|ACM38112.1| Sun protein [Agrobacterium vitis S4] Length = 493 Score = 42.0 bits (98), Expect = 0.029, Method: Composition-based stats. Identities = 18/114 (15%), Positives = 40/114 (35%), Gaps = 14/114 (12%) Query: 52 DTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSI---L 108 D + D R I++ + I+ +++ L L ++ L Sbjct: 79 DHGNPAYAALSEADRGLVRAILNTSLRFLPRIEAMLARLLDAP-----LPDGARALYHSL 133 Query: 109 RAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKF---INAVLDKVSRKEEI 159 +++ VP + V A+ +F +NAVL ++ R+++ Sbjct: 134 IVAAAQMVY-LDVPDHSAVDLAVEQANR--DPRSRRFAKLVNAVLRRLGREKQA 184 >gi|312863023|ref|ZP_07723261.1| ribosomal RNA small subunit methyltransferase B [Streptococcus vestibularis F0396] gi|311100559|gb|EFQ58764.1| ribosomal RNA small subunit methyltransferase B [Streptococcus vestibularis F0396] Length = 442 Score = 41.6 bits (97), Expect = 0.032, Method: Composition-based stats. Identities = 29/140 (20%), Positives = 55/140 (39%), Gaps = 15/140 (10%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 + AR A++ L E+ E + L +S D I++G Sbjct: 8 KKTARGQALEVL----------EEVFQEGAYSNIALNAHLS-KSYLTDKDKALVTEIVYG 56 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135 + RK + I + + E +L+ + +L + +L +P ++++ V IA Sbjct: 57 TVARKITL-EWILAHVIEDR--DKLEPWVYDLLLLSLYQLAYLDKIPAHAVVNDAVSIAK 113 Query: 136 DFFYGDEP-KFINAVLDKVS 154 + K +NAVL K+S Sbjct: 114 NRGNKKGAEKLVNAVLRKLS 133 >gi|218887132|ref|YP_002436453.1| NusB/RsmB/TIM44 [Desulfovibrio vulgaris str. 'Miyazaki F'] gi|218758086|gb|ACL08985.1| NusB/RsmB/TIM44 [Desulfovibrio vulgaris str. 'Miyazaki F'] Length = 530 Score = 41.6 bits (97), Expect = 0.033, Method: Composition-based stats. Identities = 22/101 (21%), Positives = 36/101 (35%), Gaps = 5/101 (4%) Query: 65 DLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVE 124 D +++G + + I L+ LT +L L E++ +P Sbjct: 93 DAALATELVYGYLRSEIRISWLLRRFLTA---PEKLPQEALLTLGVAAHEIVHLDRIPDY 149 Query: 125 VIISEYVC-IAHDFFYGDEPKFINAVLDKVSRKEEIKRSGC 164 + V I F G K NAVL V+R + R+ Sbjct: 150 AAVDWAVTHIRQRFGPGLG-KLANAVLRNVARLGDDARNAE 189 >gi|27375690|ref|NP_767219.1| SUN protein [Bradyrhizobium japonicum USDA 110] gi|27348828|dbj|BAC45844.1| SUN protein [Bradyrhizobium japonicum USDA 110] Length = 448 Score = 41.6 bits (97), Expect = 0.033, Method: Composition-based stats. Identities = 21/132 (15%), Positives = 44/132 (33%), Gaps = 14/132 (10%) Query: 37 TTEIISEYETYRFCADTELDVESVYL------HVDLEWFRVIIHGVMDRKQHIDLLISSC 90 +I+ D +LD + D R ++ V+ R + ++S Sbjct: 21 AADIVDGVLHKHRTLDDQLDGSGAHPGLKTLADRDRALMRRLVATVLRRLGTLGHVLSRL 80 Query: 91 LTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKF---IN 147 L + S L G +++ VP + V + ++ +N Sbjct: 81 LDKGIPSE--APRAQSALLIGAAQILWM-DVPDHAAVDLSVRLVQ--SDRRAARYAGLVN 135 Query: 148 AVLDKVSRKEEI 159 AVL + +R+ + Sbjct: 136 AVLRRCAREGQA 147 >gi|197106963|ref|YP_002132340.1| rRNA methyltransferase RsmB [Phenylobacterium zucineum HLK1] gi|196480383|gb|ACG79911.1| rRNA methyltransferase RsmB [Phenylobacterium zucineum HLK1] Length = 598 Score = 41.6 bits (97), Expect = 0.034, Method: Composition-based stats. Identities = 21/79 (26%), Positives = 32/79 (40%), Gaps = 7/79 (8%) Query: 79 RKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFF 138 ID + + L K R+ + LR G +L+ P +S V +A Sbjct: 231 HLGPIDAALQARL-RKPPPDRIVQV----LRLGAAQLL-VLKTPAHAAVSATVDLAASQK 284 Query: 139 YGDEPK-FINAVLDKVSRK 156 G K +NAVL +SR+ Sbjct: 285 GGQAFKGLVNAVLRGLSRE 303 >gi|295096932|emb|CBK86022.1| 16S rRNA m(5)C-967 methyltransferase [Enterobacter cloacae subsp. cloacae NCTC 9394] Length = 420 Score = 41.6 bits (97), Expect = 0.036, Method: Composition-based stats. Identities = 18/127 (14%), Positives = 49/127 (38%), Gaps = 6/127 (4%) Query: 32 IIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCL 91 + + ++I + ++ ++ ++ D + + GV+ ++ LI+ + Sbjct: 1 MAAQAVEQVIEQGQS---LSNVLPPLQQKVSDKDKALLQELCFGVLRTLSQLEWLINKLM 57 Query: 92 TEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLD 151 + S + ++ G +L+ +P ++E V A IN VL Sbjct: 58 SR--PMSGKQRTVHYLIMVGFYQLLHTR-IPPHAALAETVEGAVSIKRPQLKGLINGVLR 114 Query: 152 KVSRKEE 158 + R+++ Sbjct: 115 QFQRQQD 121 >gi|330993136|ref|ZP_08317074.1| Ribosomal RNA small subunit methyltransferase B [Gluconacetobacter sp. SXCC-1] gi|329759906|gb|EGG76412.1| Ribosomal RNA small subunit methyltransferase B [Gluconacetobacter sp. SXCC-1] Length = 395 Score = 41.6 bits (97), Expect = 0.036, Method: Composition-based stats. Identities = 15/90 (16%), Positives = 33/90 (36%), Gaps = 6/90 (6%) Query: 65 DLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVE 124 D + V+ + +++ L + + + +L GV +L+ P Sbjct: 19 DRAAAHRLAATVLRHMGTANEVLAPFLKREPP----EPV-RVVLLIGVAQLLF-LDTPPH 72 Query: 125 VIISEYVCIAHDFFYGDEPKFINAVLDKVS 154 ++ V +A +NAVL +V+ Sbjct: 73 AAVATSVALARRRGLVPFAGLVNAVLRRVA 102 >gi|298292785|ref|YP_003694724.1| sun protein [Starkeya novella DSM 506] gi|296929296|gb|ADH90105.1| sun protein [Starkeya novella DSM 506] Length = 446 Score = 41.6 bits (97), Expect = 0.036, Method: Composition-based stats. Identities = 22/119 (18%), Positives = 43/119 (36%), Gaps = 8/119 (6%) Query: 44 YETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMI 103 E R + + D R+I + + + LI S L + + Sbjct: 37 LEKGRPLEEALERLTRELDERDRGLARMIAATALRKFGTLRALIGSLLERGLP-EKAGRV 95 Query: 104 LCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKF---INAVLDKVSRKEEI 159 ++L G +++ VP + V +A + F +NAVL +V+R+ + Sbjct: 96 E-TLLVTGAAQILFM-DVPDHAAVDTSVALAAE--SPASAGFKGLVNAVLRRVAREGKA 150 >gi|283788076|ref|YP_003367941.1| ribosomal RNA small subunit methyltransferase B [Citrobacter rodentium ICC168] gi|282951530|emb|CBG91229.1| ribosomal RNA small subunit methyltransferase B [Citrobacter rodentium ICC168] Length = 429 Score = 41.6 bits (97), Expect = 0.036, Method: Composition-based stats. Identities = 18/128 (14%), Positives = 47/128 (36%), Gaps = 6/128 (4%) Query: 32 IIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCL 91 I + +++ + + ++ ++ D + + GV+ ++ LI + Sbjct: 10 IAAQAVEQVVEQGHS---LSNVLPPLQQKVSDKDKALLQELCFGVLRTLSQLEWLIGKLM 66 Query: 92 TEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLD 151 + + + L ++ G +L+ +P ++E V A IN VL Sbjct: 67 SRPMTGKQ--RTLHYLIMVGFYQLLYTR-IPPHAALAETVEGAVAIKRPQLKGLINGVLR 123 Query: 152 KVSRKEEI 159 + R ++ Sbjct: 124 QFQRNQDA 131 >gi|163734256|ref|ZP_02141696.1| rRNA methyltransferase RsmB [Roseobacter litoralis Och 149] gi|161392264|gb|EDQ16593.1| rRNA methyltransferase RsmB [Roseobacter litoralis Och 149] Length = 423 Score = 41.6 bits (97), Expect = 0.036, Method: Composition-based stats. Identities = 16/95 (16%), Positives = 32/95 (33%), Gaps = 12/95 (12%) Query: 63 HVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVP 122 D + + + D ++ L++ + + LR G EL C Sbjct: 40 PEDRARAARLAQDTLRGLERADRILQKHLSKYPPL-----TVRNALRVGAFEL--CTGTA 92 Query: 123 VEVIISEYVCIA---HDFFYGDEPKFINAVLDKVS 154 +++ V + + + NAVL KV+ Sbjct: 93 AHGVVNAMVELVSRHKHYSHLK--GLTNAVLRKVA 125 >gi|126730443|ref|ZP_01746254.1| ribosomal RNA small subunit methyltransferase B, putative [Sagittula stellata E-37] gi|126709176|gb|EBA08231.1| ribosomal RNA small subunit methyltransferase B, putative [Sagittula stellata E-37] Length = 413 Score = 41.6 bits (97), Expect = 0.037, Method: Composition-based stats. Identities = 34/139 (24%), Positives = 52/139 (37%), Gaps = 23/139 (16%) Query: 17 GIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGV 76 ARLAAV L D+ ++ ++ +E D D + + V Sbjct: 5 SPARLAAVDLL---DM-------VLVQHRPL-----SETDRLDRLAAPDRAAAQRLATEV 49 Query: 77 MDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHD 136 + + D ++ L K R+ +ILR G EL C ++S+ V IA Sbjct: 50 LRGLERADRVLKPHL-RKAPAGRV----MNILRLGATEL--CTGGAAHGVVSDCVEIAAR 102 Query: 137 FFYGDEPK-FINAVLDKVS 154 K NAVL KV+ Sbjct: 103 GKRTQGAKGLANAVLRKVA 121 >gi|34499717|ref|NP_903932.1| sun protein [Chromobacterium violaceum ATCC 12472] gi|34105568|gb|AAQ61922.1| probable sun-like protein [Chromobacterium violaceum ATCC 12472] Length = 416 Score = 41.6 bits (97), Expect = 0.038, Method: Composition-based stats. Identities = 21/134 (15%), Positives = 43/134 (32%), Gaps = 11/134 (8%) Query: 28 YQIDIIGCSTTEIISEYETYRFCADTELDVE---SVYLHVDLEWFRVIIHGVMDRKQHID 84 YQI + EI++ E D DV+ + + + +G + + Sbjct: 2 YQIQQL---AAEILARIEAGTTLTDALADVQRQAGKLTPAERGALQDLSYGSLRHLGVLR 58 Query: 85 LLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPK 144 + + + +L + +L + V+ E V +A G Sbjct: 59 HCLRQLVPH--PLPE-PQVER-LLLIALYQLQYTRAAQYAVV-HEAVTLAGMMARGKFKA 113 Query: 145 FINAVLDKVSRKEE 158 +N VL R+ + Sbjct: 114 LVNGVLRNFQRRRD 127 >gi|227354905|ref|ZP_03839319.1| ribosomal RNA small subunit methyltransferase B [Proteus mirabilis ATCC 29906] gi|227164987|gb|EEI49826.1| ribosomal RNA small subunit methyltransferase B [Proteus mirabilis ATCC 29906] Length = 422 Score = 41.6 bits (97), Expect = 0.038, Method: Composition-based stats. Identities = 30/151 (19%), Positives = 55/151 (36%), Gaps = 21/151 (13%) Query: 10 LKLSHR-RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEW 68 +K S+ R IA A Q L Q G S + +I E + D Sbjct: 1 MKTSYNLRSIAAKAIAQVLDQ----GLSLSSVIPEL-------------QKNISDKDKAL 43 Query: 69 FRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIIS 128 + + G + ++ +I + + IL ++ G+ +L+ VP ++ Sbjct: 44 LQELCFGTLRTLPQLEWIIQQLMDK--PLKGKQRILHYLIMVGLYQLLYTR-VPAHAALA 100 Query: 129 EYVCIAHDFFYGDEPKFINAVLDKVSRKEEI 159 E V A IN VL + R++++ Sbjct: 101 ETVNGAIALKKPQLKGLINGVLRQFQRQQDV 131 >gi|197287099|ref|YP_002152971.1| 16S rRNA methyltransferase B [Proteus mirabilis HI4320] gi|224493257|sp|B4F1L5|RSMB_PROMH RecName: Full=Ribosomal RNA small subunit methyltransferase B; AltName: Full=16S rRNA m5C967 methyltransferase; AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase rsmB gi|194684586|emb|CAR46442.1| ribosomal RNA small subunit methyltransferase B [Proteus mirabilis HI4320] Length = 422 Score = 41.6 bits (97), Expect = 0.038, Method: Composition-based stats. Identities = 30/151 (19%), Positives = 55/151 (36%), Gaps = 21/151 (13%) Query: 10 LKLSHR-RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEW 68 +K S+ R IA A Q L Q G S + +I E + D Sbjct: 1 MKTSYNLRSIAAKAIAQVLDQ----GLSLSSVIPEL-------------QKNISDKDKAL 43 Query: 69 FRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIIS 128 + + G + ++ +I + + IL ++ G+ +L+ VP ++ Sbjct: 44 LQELCFGTLRTLPQLEWIIQQLMDK--PLKGKQRILHYLIMVGLYQLLYTR-VPAHAALA 100 Query: 129 EYVCIAHDFFYGDEPKFINAVLDKVSRKEEI 159 E V A IN VL + R++++ Sbjct: 101 ETVNGAIALKKPQLKGLINGVLRQFQRQQDV 131 >gi|86139371|ref|ZP_01057940.1| ribosomal RNA small subunit methyltransferase B, putative [Roseobacter sp. MED193] gi|85823874|gb|EAQ44080.1| ribosomal RNA small subunit methyltransferase B, putative [Roseobacter sp. MED193] Length = 420 Score = 41.6 bits (97), Expect = 0.038, Method: Composition-based stats. Identities = 19/106 (17%), Positives = 37/106 (34%), Gaps = 14/106 (13%) Query: 59 SVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIE- 117 D + + + + D ++ L + + ++LR G +EL Sbjct: 35 ERLTPEDRARAQRLTLQTLRSLERADRVLQKHLKKATPL-----TVQNVLRLGTVELCHG 89 Query: 118 ---CHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIK 160 V V I I+ +G +NAVL KV+ + + + Sbjct: 90 AAAHGVVNDMVAI-----ISKHRRHGKLKGLVNAVLRKVAEQGQAE 130 >gi|92115829|ref|YP_575558.1| Fmu (Sun) [Nitrobacter hamburgensis X14] gi|91798723|gb|ABE61098.1| Fmu (Sun) [Nitrobacter hamburgensis X14] Length = 450 Score = 41.6 bits (97), Expect = 0.040, Method: Composition-based stats. Identities = 20/131 (15%), Positives = 44/131 (33%), Gaps = 14/131 (10%) Query: 37 TTEIISEYETYRFCADTELDVESVYL------HVDLEWFRVIIHGVMDRKQHIDLLISSC 90 +I+ D +L+ + + D R ++ ++ R + ++S Sbjct: 21 AADILDGVLHKHRTLDEQLEGAAAHPGLKALADRDRALMRRLVATILRRLGTLGHVLSRL 80 Query: 91 LTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKF---IN 147 L S L G +++ VP + V + K+ +N Sbjct: 81 LDRGIPTD--APRAQSALLIGAAQILWM-DVPDHAAVDLSVRLVQ--SDRRAAKYAGLVN 135 Query: 148 AVLDKVSRKEE 158 AVL + +R+ + Sbjct: 136 AVLRRCAREGQ 146 >gi|319744301|gb|EFV96665.1| RNA methyltransferase Sun [Streptococcus agalactiae ATCC 13813] Length = 440 Score = 41.6 bits (97), Expect = 0.042, Method: Composition-based stats. Identities = 30/155 (19%), Positives = 53/155 (34%), Gaps = 41/155 (26%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 + AR A+ L E + + Y A + +S D I++G Sbjct: 6 KKSARGLALMTL-----------EEVFDKGAYSNIALNKSLKKSRLSDKDRALVTEIVYG 54 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLEL-------------IECHSVP 122 + RK ++ +S + + L EL + ++P Sbjct: 55 TVARKITLEWYLSHFI-----------VDRDKL-----ELWVYHLLLLSLYQLLYLDNIP 98 Query: 123 VEVIISEYVCIAHDFFYGDEP-KFINAVLDKVSRK 156 I+++ V IA + K INAVL +VS + Sbjct: 99 DHAIVNDAVTIAKNRGNKKGAEKLINAVLRRVSSE 133 >gi|77410664|ref|ZP_00787024.1| sun protein [Streptococcus agalactiae CJB111] gi|77163379|gb|EAO74330.1| sun protein [Streptococcus agalactiae CJB111] Length = 440 Score = 41.2 bits (96), Expect = 0.043, Method: Composition-based stats. Identities = 30/155 (19%), Positives = 53/155 (34%), Gaps = 41/155 (26%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 + AR A+ L E + + Y A + +S D I++G Sbjct: 6 KKSARGLALMTL-----------EEVFDKGAYSNIALNKSLKKSRLSDKDRALVTEIVYG 54 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLEL-------------IECHSVP 122 + RK ++ +S + + L EL + ++P Sbjct: 55 TVARKITLEWYLSHFI-----------VDRDKL-----ELWVYHLLLLSLYQLLYLDNIP 98 Query: 123 VEVIISEYVCIAHDFFYGDEP-KFINAVLDKVSRK 156 I+++ V IA + K INAVL +VS + Sbjct: 99 DHAIVNDAVTIAKNRGNKKGAEKLINAVLRRVSSE 133 >gi|255318029|ref|ZP_05359274.1| ribosomal RNA small subunit methyltransferase B [Acinetobacter radioresistens SK82] gi|262380625|ref|ZP_06073779.1| ribosomal RNA small subunit methyltransferase B [Acinetobacter radioresistens SH164] gi|255304852|gb|EET84024.1| ribosomal RNA small subunit methyltransferase B [Acinetobacter radioresistens SK82] gi|262298071|gb|EEY85986.1| ribosomal RNA small subunit methyltransferase B [Acinetobacter radioresistens SH164] Length = 435 Score = 41.2 bits (96), Expect = 0.043, Method: Composition-based stats. Identities = 18/100 (18%), Positives = 41/100 (41%), Gaps = 5/100 (5%) Query: 59 SVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIEC 118 + D F ++ G + + + L LT+ + + ++ + L G+ +++ C Sbjct: 39 NQVADRDRALFHELLLGTLRQWFALKSLALPLLTK--PLN--NPVVETCLYLGLYQVL-C 93 Query: 119 HSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEE 158 + ISE V + +NA+L + +R+ E Sbjct: 94 TRIAPHAAISETVTATKQLGFHPLSGVVNAILRRATRETE 133 >gi|22536500|ref|NP_687351.1| sun protein [Streptococcus agalactiae 2603V/R] gi|25010379|ref|NP_734774.1| sun protein [Streptococcus agalactiae NEM316] gi|76787603|ref|YP_329039.1| sun protein [Streptococcus agalactiae A909] gi|77404948|ref|ZP_00782049.1| sun protein [Streptococcus agalactiae H36B] gi|22533332|gb|AAM99223.1|AE014206_3 sun protein [Streptococcus agalactiae 2603V/R] gi|23094731|emb|CAD45950.1| unknown [Streptococcus agalactiae NEM316] gi|76562660|gb|ABA45244.1| sun protein [Streptococcus agalactiae A909] gi|77176387|gb|EAO79155.1| sun protein [Streptococcus agalactiae H36B] Length = 440 Score = 41.2 bits (96), Expect = 0.045, Method: Composition-based stats. Identities = 30/155 (19%), Positives = 53/155 (34%), Gaps = 41/155 (26%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 + AR A+ L E + + Y A + +S D I++G Sbjct: 6 KKSARGLALMTL-----------EEVFDKGAYSNIALNKSLKKSRLSDKDRALVTEIVYG 54 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLEL-------------IECHSVP 122 + RK ++ +S + + L EL + ++P Sbjct: 55 TVARKITLEWYLSHFI-----------VDRDKL-----ELWVYHLLLLSLYQLLYLDNIP 98 Query: 123 VEVIISEYVCIAHDFFYGDEP-KFINAVLDKVSRK 156 I+++ V IA + K INAVL +VS + Sbjct: 99 DHAIVNDAVTIAKNRGNKKGAEKLINAVLRRVSSE 133 >gi|332873408|ref|ZP_08441362.1| ribosomal RNA small subunit methyltransferase B [Acinetobacter baumannii 6014059] gi|332738471|gb|EGJ69344.1| ribosomal RNA small subunit methyltransferase B [Acinetobacter baumannii 6014059] Length = 434 Score = 41.2 bits (96), Expect = 0.047, Method: Composition-based stats. Identities = 18/109 (16%), Positives = 42/109 (38%), Gaps = 5/109 (4%) Query: 59 SVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIEC 118 + D F ++ G + + + + L++ + + + + L G+ +++ C Sbjct: 39 NQVAERDRALFHELVLGTLRQWFALKSISLPLLSK--PLN--NETVETCLYVGLYQVL-C 93 Query: 119 HSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRSGCVSA 167 + ISE V + +NA+L + +R+ E G A Sbjct: 94 TRIAAHAAISETVDATKQLGFPALSGIVNAILRRATRETEDFEQGLQQA 142 >gi|193078768|gb|ABO13846.2| 16S rRNA m5C967 SAM-dependent methyltransferase [Acinetobacter baumannii ATCC 17978] Length = 434 Score = 41.2 bits (96), Expect = 0.048, Method: Composition-based stats. Identities = 18/109 (16%), Positives = 42/109 (38%), Gaps = 5/109 (4%) Query: 59 SVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIEC 118 + D F ++ G + + + + L++ + + + + L G+ +++ C Sbjct: 39 NQVAERDRALFHELVLGTLRQWFALKSISLPLLSK--PLN--NETVETCLYVGLYQVL-C 93 Query: 119 HSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRSGCVSA 167 + ISE V + +NA+L + +R+ E G A Sbjct: 94 TRIAAHAAISETVDATKQLGFPALSGIVNAILRRATRETEDFEQGLQQA 142 >gi|25028274|ref|NP_738328.1| hypothetical protein CE1718 [Corynebacterium efficiens YS-314] gi|259507332|ref|ZP_05750232.1| RNA methyltransferase Sun [Corynebacterium efficiens YS-314] gi|23493558|dbj|BAC18528.1| conserved hypothetical protein [Corynebacterium efficiens YS-314] gi|259165043|gb|EEW49597.1| RNA methyltransferase Sun [Corynebacterium efficiens YS-314] Length = 490 Score = 41.2 bits (96), Expect = 0.048, Method: Composition-based stats. Identities = 20/114 (17%), Positives = 44/114 (38%), Gaps = 15/114 (13%) Query: 65 DLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVE 124 D + I +G + +D +ISS +D + +LR G +++ V Sbjct: 90 DAGFATEITYGTLRNLGLLDAVISSA--ANRPVKDIDPEVLDVLRIGAYQVLFTR-VEDH 146 Query: 125 VIISEYVCIA---HDFFYGDEPKFINAVLDKVSRK------EEIKRSGCVSAIT 169 + V + F + F NAV+ ++R ++++ G ++ + Sbjct: 147 AAVDTTVKMVGGLKKF---NATGFANAVMRTITRTPAEQWLDKLEPEGEIARVA 197 >gi|149910330|ref|ZP_01898973.1| Putative Sun protein [Moritella sp. PE36] gi|149806578|gb|EDM66546.1| Putative Sun protein [Moritella sp. PE36] Length = 431 Score = 41.2 bits (96), Expect = 0.051, Method: Composition-based stats. Identities = 26/139 (18%), Positives = 49/139 (35%), Gaps = 16/139 (11%) Query: 20 RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79 R +A + LYQ+ G S T + + + D + I +GV+ Sbjct: 4 RASAAKVLYQVVDKGQSLTTAL-------------PIAQQLLPAKDRALLQEICYGVLRW 50 Query: 80 KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139 + +S L K + + IL G+ +L +P ++E V Sbjct: 51 LPRL-EFMSRQLMSKPLIGKQRPVHFLIL-VGLYQLKYMR-IPAHAAVAETVNAIKVLKS 107 Query: 140 GDEPKFINAVLDKVSRKEE 158 +NA+L R+++ Sbjct: 108 PKLSGLVNAILRNYQRQQD 126 >gi|284045174|ref|YP_003395514.1| sun protein [Conexibacter woesei DSM 14684] gi|283949395|gb|ADB52139.1| sun protein [Conexibacter woesei DSM 14684] Length = 444 Score = 41.2 bits (96), Expect = 0.051, Method: Composition-based stats. Identities = 26/123 (21%), Positives = 50/123 (40%), Gaps = 6/123 (4%) Query: 37 TTEIISEYETYRFCADTELDVESVYLHVDL---EWFRVIIHGVMDRKQHIDLLISSCLTE 93 ++ E+ AD L E+ +D + + G + R++ +D +I Sbjct: 15 AAAVLRRVESDGAYADRALAGEARRAGLDARDHAFAMALAFGAVQRRRTLDHVIERLARR 74 Query: 94 KWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKV 153 +LD + LR G+L+L+ V + + V +A K +NAVL + Sbjct: 75 --PVGQLDPPVRDALRLGLLQLLFLGGVAPHAAVDQSVELAKAAGGP-GYKLVNAVLRRG 131 Query: 154 SRK 156 +R+ Sbjct: 132 ARE 134 >gi|260553856|ref|ZP_05826124.1| 16S rRNA m5C967 SAM-dependent methyltransferase [Acinetobacter sp. RUH2624] gi|260404976|gb|EEW98478.1| 16S rRNA m5C967 SAM-dependent methyltransferase [Acinetobacter sp. RUH2624] Length = 434 Score = 41.2 bits (96), Expect = 0.051, Method: Composition-based stats. Identities = 18/109 (16%), Positives = 43/109 (39%), Gaps = 5/109 (4%) Query: 59 SVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIEC 118 + D F ++ G + + + + L++ + + + + L G+ +++ C Sbjct: 39 NQVAERDRALFHELVLGTLRQWFALKSISLPLLSK--PLN--NETVETCLYVGLYQVL-C 93 Query: 119 HSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRSGCVSA 167 + ISE V + +NA+L + +R+ E + G A Sbjct: 94 TRIAAHAAISETVDATKQLGFPALSGIVNAILRRATRETEDFQQGLQQA 142 >gi|126643464|ref|YP_001086448.1| 16S rRNA m5C967 SAM-dependent methyltransferase [Acinetobacter baumannii ATCC 17978] Length = 405 Score = 41.2 bits (96), Expect = 0.052, Method: Composition-based stats. Identities = 18/109 (16%), Positives = 42/109 (38%), Gaps = 5/109 (4%) Query: 59 SVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIEC 118 + D F ++ G + + + + L++ + + + + L G+ +++ C Sbjct: 10 NQVAERDRALFHELVLGTLRQWFALKSISLPLLSK--PLN--NETVETCLYVGLYQVL-C 64 Query: 119 HSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRSGCVSA 167 + ISE V + +NA+L + +R+ E G A Sbjct: 65 TRIAAHAAISETVDATKQLGFPALSGIVNAILRRATRETEDFEQGLQQA 113 >gi|37681411|ref|NP_936020.1| sun protein [Vibrio vulnificus YJ016] gi|320154882|ref|YP_004187261.1| ribosomal RNA small subunit methyltransferase B [Vibrio vulnificus MO6-24/O] gi|46396771|sp|Q7MGK4|RSMB_VIBVY RecName: Full=Ribosomal RNA small subunit methyltransferase B; AltName: Full=16S rRNA m5C967 methyltransferase; AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase rsmB gi|37200163|dbj|BAC95991.1| sun protein [Vibrio vulnificus YJ016] gi|319930194|gb|ADV85058.1| ribosomal RNA small subunit methyltransferase B [Vibrio vulnificus MO6-24/O] Length = 426 Score = 41.2 bits (96), Expect = 0.053, Method: Composition-based stats. Identities = 24/140 (17%), Positives = 46/140 (32%), Gaps = 16/140 (11%) Query: 20 RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79 R AA LYQ+ G S + + E + D + I +G + Sbjct: 4 RAAAANVLYQVVDRGNSLSTALPE-------------AQQSIRPRDHALLQEICYGALRY 50 Query: 80 KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139 ++ + + + + ++ G+ +L +P + E V A Sbjct: 51 LPRLESIAGKLMDK--PLKGKQRVFHHLILVGLYQLGHMR-IPAHAAVGETVEGAQALKG 107 Query: 140 GDEPKFINAVLDKVSRKEEI 159 INAVL R+++ Sbjct: 108 PRLRGLINAVLRNYQREQQA 127 >gi|148654179|ref|YP_001281272.1| Fmu (Sun) domain-containing protein [Psychrobacter sp. PRwf-1] gi|148573263|gb|ABQ95322.1| Fmu (Sun) domain protein [Psychrobacter sp. PRwf-1] Length = 528 Score = 41.2 bits (96), Expect = 0.054, Method: Composition-based stats. Identities = 17/94 (18%), Positives = 36/94 (38%), Gaps = 5/94 (5%) Query: 65 DLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVE 124 D + ++ + L+ S L + +++ + ++ G+ +L+ +V Sbjct: 46 DKGFAHALLLTTLRHWHATARLLDS-LADN-PIDEIEV--RTTIQLGITQLLY-LNVADH 100 Query: 125 VIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEE 158 I E V Y +NAVL KV++ Sbjct: 101 AAIHETVEAVKHIDYARASGLVNAVLRKVAKNPN 134 >gi|27364478|ref|NP_760006.1| 16S rRNA methyltransferase B [Vibrio vulnificus CMCP6] gi|46396909|sp|Q8DDE5|RSMB_VIBVU RecName: Full=Ribosomal RNA small subunit methyltransferase B; AltName: Full=16S rRNA m5C967 methyltransferase; AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase rsmB gi|27360597|gb|AAO09533.1| ribosomal RNA small subunit methyltransferase B [Vibrio vulnificus CMCP6] Length = 426 Score = 41.2 bits (96), Expect = 0.054, Method: Composition-based stats. Identities = 24/140 (17%), Positives = 46/140 (32%), Gaps = 16/140 (11%) Query: 20 RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79 R AA LYQ+ G S + + E + D + I +G + Sbjct: 4 RAAAANVLYQVVDRGNSLSTALPE-------------AQQSIRPRDHALLQEICYGALRY 50 Query: 80 KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139 ++ + + + + ++ G+ +L +P + E V A Sbjct: 51 LPRLESIAGKLMDK--PLKGKQRVFHHLILVGLYQLGHMR-IPAHAAVGETVEGAQALKG 107 Query: 140 GDEPKFINAVLDKVSRKEEI 159 INAVL R+++ Sbjct: 108 PRLRGLINAVLRNYQREQQA 127 >gi|99079930|ref|YP_612084.1| Fmu (Sun) [Ruegeria sp. TM1040] gi|99036210|gb|ABF62822.1| Fmu (Sun) [Ruegeria sp. TM1040] Length = 424 Score = 40.9 bits (95), Expect = 0.058, Method: Composition-based stats. Identities = 27/141 (19%), Positives = 55/141 (39%), Gaps = 21/141 (14%) Query: 17 GIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGV 76 AR AAV AL +++ E ++ + + D + + V Sbjct: 9 SDARRAAV-AL---------LDKVLGEGL---LLSECQTQILERLEPADRARAQRLALQV 55 Query: 77 MDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCI-AH 135 + + D +++ L + + + + LR G +EL C ++++ V + A Sbjct: 56 LRALERADRVLAKHLRKPPALH-----VRNALRLGTVEL--CSGGAAHGVVNDIVNLVAR 108 Query: 136 DFFYGDEPKFINAVLDKVSRK 156 +G +NAVL KV+ + Sbjct: 109 HRRHGQLKGLVNAVLRKVATE 129 >gi|218295080|ref|ZP_03495916.1| NusB/RsmB/TIM44-like protein [Thermus aquaticus Y51MC23] gi|218244283|gb|EED10808.1| NusB/RsmB/TIM44-like protein [Thermus aquaticus Y51MC23] Length = 398 Score = 40.9 bits (95), Expect = 0.059, Method: Composition-based stats. Identities = 25/99 (25%), Positives = 40/99 (40%), Gaps = 6/99 (6%) Query: 59 SVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIEC 118 S D + +++GV+ R + +D L+ L RL + ILR G LE + Sbjct: 34 SDLPERDKAYVTHLVYGVLRRLRLLDFLLEPHLRA---PDRLPKEVLWILRLGALEWLLG 90 Query: 119 HSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKE 157 V S +V A +NAVL ++ +E Sbjct: 91 KEDHARV--SPWVEEAKARHPALS-GLVNAVLRRLKPRE 126 >gi|225024416|ref|ZP_03713608.1| hypothetical protein EIKCOROL_01291 [Eikenella corrodens ATCC 23834] gi|224942797|gb|EEG24006.1| hypothetical protein EIKCOROL_01291 [Eikenella corrodens ATCC 23834] Length = 419 Score = 40.9 bits (95), Expect = 0.061, Method: Composition-based stats. Identities = 22/126 (17%), Positives = 50/126 (39%), Gaps = 15/126 (11%) Query: 33 IGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLT 92 GC+ +++++E +L + D+ + G + + +DL+++ Sbjct: 19 AGCNLSDVLAEIWR----DHPQLSAQERGALQDIAYGCQRFSGSL--RALLDLMLNK--- 69 Query: 93 EKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDK 152 R D+ S++ A + +L + V+ +E V A G NA+L + Sbjct: 70 ---PLPRADI--RSLILAALYQLAYSRNAAHAVV-NEAVRAAGKIGKGQYKALTNALLRR 123 Query: 153 VSRKEE 158 R+ + Sbjct: 124 FLRERD 129 >gi|30249919|ref|NP_841989.1| sun; rRNA methylase [Nitrosomonas europaea ATCC 19718] gi|30180956|emb|CAD85883.1| sun; rRNA methylase [Nitrosomonas europaea ATCC 19718] Length = 426 Score = 40.9 bits (95), Expect = 0.062, Method: Composition-based stats. Identities = 27/137 (19%), Positives = 48/137 (35%), Gaps = 17/137 (12%) Query: 21 LAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRK 80 L AVQA+ ++ G + TE++ + L + D+ + GV+ Sbjct: 6 LLAVQAIREV-FAGANLTEVLRNIWQ----TGSHLTPQQRGAIQDIAY------GVLRHY 54 Query: 81 QHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYG 140 +D ++ L + D L +L + +L P I+ V + Sbjct: 55 GQLDAILHKLLNK--PVQ--DKQLHYLLAVALYQLRYSK-APAHAIVDHAVSSSRKITRN 109 Query: 141 DE-PKFINAVLDKVSRK 156 +NAVL RK Sbjct: 110 PAVSGLVNAVLRNFMRK 126 >gi|218514046|ref|ZP_03510886.1| probable RNA methyltransferase - sun protein [Rhizobium etli 8C-3] Length = 380 Score = 40.9 bits (95), Expect = 0.063, Method: Composition-based stats. Identities = 20/95 (21%), Positives = 37/95 (38%), Gaps = 10/95 (10%) Query: 79 RKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFF 138 ID I+S L L +L G +++ VP + V A+ Sbjct: 1 HLPRIDAAIASLLES--PLPEGARALHHVLSIGAAQILY-LDVPDHSAVDLAVEQANQ-- 55 Query: 139 YGDEPKF---INAVLDKVSRKEE--IKRSGCVSAI 168 +F +NAVL ++ R+++ + G V+ + Sbjct: 56 DPRNRRFAKLVNAVLRRLGREKDPVLAEIGKVAPM 90 >gi|213621077|ref|ZP_03373860.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica serovar Typhi str. E98-2068] Length = 180 Score = 40.9 bits (95), Expect = 0.065, Method: Composition-based stats. Identities = 18/101 (17%), Positives = 39/101 (38%), Gaps = 3/101 (2%) Query: 58 ESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIE 117 + D + + GV+ ++ LI+ ++ + + + ++ G +L+ Sbjct: 1 QQKVADKDKALLQELCFGVLRTLSQLEWLINKLMSRPMTGKQ--RTVHYLIMVGFYQLLY 58 Query: 118 CHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEE 158 VP ++E V A IN VL + R++E Sbjct: 59 TR-VPPHAALAETVEGAVSIKRPQLKGLINGVLRQFQRQQE 98 >gi|71736115|ref|YP_272333.1| sun protein [Pseudomonas syringae pv. phaseolicola 1448A] gi|71556668|gb|AAZ35879.1| sun protein [Pseudomonas syringae pv. phaseolicola 1448A] gi|320326680|gb|EFW82725.1| sun protein [Pseudomonas syringae pv. glycinea str. B076] gi|320331346|gb|EFW87289.1| sun protein [Pseudomonas syringae pv. glycinea str. race 4] gi|330881831|gb|EGH15980.1| 16S rRNA methyltransferase B [Pseudomonas syringae pv. glycinea str. race 4] Length = 448 Score = 40.9 bits (95), Expect = 0.068, Method: Composition-based stats. Identities = 21/95 (22%), Positives = 34/95 (35%), Gaps = 3/95 (3%) Query: 65 DLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVE 124 D + + G + + L + L + F D + ++L G+ +L +P Sbjct: 36 DRGLTQDLAFGTARWQPRLSALAAKLLQK--PFKAADADVEALLLVGLYQLFYSR-IPAH 92 Query: 125 VIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEI 159 I E V AH +NAVL R E Sbjct: 93 AAIGETVGCAHKLKKPWAKGLLNAVLRNAQRDGEA 127 >gi|93007290|ref|YP_581727.1| Fmu (Sun) [Psychrobacter cryohalolentis K5] gi|92394968|gb|ABE76243.1| Fmu (Sun) [Psychrobacter cryohalolentis K5] Length = 524 Score = 40.9 bits (95), Expect = 0.069, Method: Composition-based stats. Identities = 16/98 (16%), Positives = 37/98 (37%), Gaps = 5/98 (5%) Query: 59 SVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIEC 118 + D + ++ + + ++ L+ S + + ++ G+ +L+ Sbjct: 51 NSLHDGDKGFAHALLLTTLRQWYALERLLDSLADNSIDEKEV----RTTIQVGLTQLLYL 106 Query: 119 HSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRK 156 V I E V A + + INA+L KV++ Sbjct: 107 Q-VADHAAIHETVEAAKEIEFAHATGLINAILRKVAKN 143 >gi|71066692|ref|YP_265419.1| hypothetical protein Psyc_2138 [Psychrobacter arcticus 273-4] gi|71039677|gb|AAZ19985.1| conserved hypothetical protein [Psychrobacter arcticus 273-4] Length = 524 Score = 40.9 bits (95), Expect = 0.070, Method: Composition-based stats. Identities = 16/98 (16%), Positives = 37/98 (37%), Gaps = 5/98 (5%) Query: 59 SVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIEC 118 + D + ++ + + ++ L+ S + + ++ G+ +L+ Sbjct: 51 NSLHDGDKGFAHALLLTTLRQWYALERLLDSLADNSIDEKEV----RTTIQVGLTQLLYL 106 Query: 119 HSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRK 156 V I E V A + + INA+L KV++ Sbjct: 107 Q-VADHAAIHETVEAAKEIEFAHATGLINAILRKVAKN 143 >gi|56459128|ref|YP_154409.1| tRNA and rRNA cytosine-C5-methylase [Idiomarina loihiensis L2TR] gi|56178138|gb|AAV80860.1| tRNA and rRNA cytosine-C5-methylase [Idiomarina loihiensis L2TR] Length = 442 Score = 40.9 bits (95), Expect = 0.071, Method: Composition-based stats. Identities = 17/98 (17%), Positives = 35/98 (35%), Gaps = 3/98 (3%) Query: 59 SVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIEC 118 D I +GV+ ++ L+ + L + +L +L G +L C Sbjct: 43 GKLSDADKRLASAISYGVLRVLPSLNKLVGAKLDK--PLKGKLKVLHYLLLVGAYQL-YC 99 Query: 119 HSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRK 156 + +S V A + +N +L ++ R+ Sbjct: 100 LRIKDHAAVSATVEAARILGKRNHKGLVNGILRQLLRE 137 >gi|300718674|ref|YP_003743477.1| 16S rRNA methyltransferase B [Erwinia billingiae Eb661] gi|299064510|emb|CAX61630.1| 16S rRNA methyltransferase B [Erwinia billingiae Eb661] Length = 429 Score = 40.5 bits (94), Expect = 0.074, Method: Composition-based stats. Identities = 21/131 (16%), Positives = 45/131 (34%), Gaps = 11/131 (8%) Query: 32 IIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCL 91 + + I E + ++ + D + + +GV+ ++ +I Sbjct: 7 LRSIAAQTIEKVVEQGQSLSNVLPAAQKSVAEKDAALLQELCYGVLRTLPQLEWIIGQL- 65 Query: 92 TEKWSFSR-LDMILCSI---LRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFIN 147 R + +I + G+ +LI +P ++E V A IN Sbjct: 66 -----MERPMTGKQRTIHFLVMVGLYQLIFTR-IPAHAALAETVEGASSLKRQQFKGLIN 119 Query: 148 AVLDKVSRKEE 158 VL + RK++ Sbjct: 120 GVLRQFQRKQD 130 >gi|153008423|ref|YP_001369638.1| Fmu (Sun) domain-containing protein [Ochrobactrum anthropi ATCC 49188] gi|151560311|gb|ABS13809.1| Fmu (Sun) domain protein [Ochrobactrum anthropi ATCC 49188] Length = 453 Score = 40.5 bits (94), Expect = 0.075, Method: Composition-based stats. Identities = 18/97 (18%), Positives = 38/97 (39%), Gaps = 8/97 (8%) Query: 65 DLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVE 124 D R I+ + + I+ I+ L + L +L + ++ ++P Sbjct: 52 DRALVRAILGSALRNRGSIERAINKRLDR--PLPENAVALKHLLHVAIAQIFY-LNLPDH 108 Query: 125 VIISEYVCIAHDFFYGDEPKF---INAVLDKVSRKEE 158 + V A+ K+ +NA+L ++SR +E Sbjct: 109 SAVDLAVEAANA--DPRNRKYAGLVNALLRRLSRNKE 143 >gi|71905670|ref|YP_283257.1| Fmu, rRNA SAM-dependent methyltransferase [Dechloromonas aromatica RCB] gi|71845291|gb|AAZ44787.1| Fmu, rRNA SAM-dependent methyltransferase [Dechloromonas aromatica RCB] Length = 419 Score = 40.5 bits (94), Expect = 0.075, Method: Composition-based stats. Identities = 15/89 (16%), Positives = 32/89 (35%), Gaps = 5/89 (5%) Query: 70 RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISE 129 + +++G + D + L + + ++L + L V+ + Sbjct: 46 QDLVYGSLRAYGRGDFFLGRLLDKPLDVEEV----RALLLVSIYRLETRPDAAHTVV-DQ 100 Query: 130 YVCIAHDFFYGDEPKFINAVLDKVSRKEE 158 V A + G +NAVL R++E Sbjct: 101 AVSAAGELANGRFRGLVNAVLRNFLRQQE 129 >gi|169794225|ref|YP_001712018.1| 16S rRNA m5C967 SAM-dependent methyltransferase [Acinetobacter baumannii AYE] gi|215481783|ref|YP_002323965.1| ribosomal RNA small subunit methyltransferase B [Acinetobacter baumannii AB307-0294] gi|301510400|ref|ZP_07235637.1| ribosomal RNA small subunit methyltransferase B [Acinetobacter baumannii AB058] gi|332850303|ref|ZP_08432637.1| ribosomal RNA small subunit methyltransferase B [Acinetobacter baumannii 6013150] gi|332871589|ref|ZP_08440083.1| ribosomal RNA small subunit methyltransferase B [Acinetobacter baumannii 6013113] gi|169147152|emb|CAM85011.1| 16S rRNA m5C967 SAM-dependent methyltransferase [Acinetobacter baumannii AYE] gi|213987633|gb|ACJ57932.1| ribosomal RNA small subunit methyltransferase B [Acinetobacter baumannii AB307-0294] gi|332730761|gb|EGJ62071.1| ribosomal RNA small subunit methyltransferase B [Acinetobacter baumannii 6013150] gi|332731443|gb|EGJ62735.1| ribosomal RNA small subunit methyltransferase B [Acinetobacter baumannii 6013113] Length = 434 Score = 40.5 bits (94), Expect = 0.077, Method: Composition-based stats. Identities = 17/105 (16%), Positives = 41/105 (39%), Gaps = 5/105 (4%) Query: 59 SVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIEC 118 + D F ++ G + + + + L++ + + + + L G+ +++ C Sbjct: 39 NQVAERDRALFHELVLGTLRQWFALKSISLPLLSK--PLN--NETVETCLYVGLYQVL-C 93 Query: 119 HSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRSG 163 + ISE V + +NA+L + +R+ E G Sbjct: 94 TRIAAHAAISETVDATKQLGFPALSGIVNAILRRATRETEDFEQG 138 >gi|90421553|ref|YP_529923.1| Fmu (Sun) [Rhodopseudomonas palustris BisB18] gi|90103567|gb|ABD85604.1| Fmu (Sun) [Rhodopseudomonas palustris BisB18] Length = 450 Score = 40.5 bits (94), Expect = 0.077, Method: Composition-based stats. Identities = 20/131 (15%), Positives = 44/131 (33%), Gaps = 14/131 (10%) Query: 37 TTEIISEYETYRFCADTELDVESVYL------HVDLEWFRVIIHGVMDRKQHIDLLISSC 90 +I+ D +L+ + + D R ++ ++ R + ++S Sbjct: 21 AADILDGVLHKHRTLDDQLEGAAAHPGLKTLSDRDRALMRRLVATILRRLGTLGHVLSRM 80 Query: 91 LTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKF---IN 147 L S L G +++ VP + V + K+ +N Sbjct: 81 LDRGLPTD--APRAQSALLIGAAQILWM-EVPDHAAVDLSVRLVQ--SDRRAAKYAGLVN 135 Query: 148 AVLDKVSRKEE 158 AVL + +R+ + Sbjct: 136 AVLRRCAREGQ 146 >gi|262280615|ref|ZP_06058399.1| 16S rRNA m5C967 SAM-dependent methyltransferase [Acinetobacter calcoaceticus RUH2202] gi|262258393|gb|EEY77127.1| 16S rRNA m5C967 SAM-dependent methyltransferase [Acinetobacter calcoaceticus RUH2202] Length = 434 Score = 40.5 bits (94), Expect = 0.078, Method: Composition-based stats. Identities = 17/109 (15%), Positives = 43/109 (39%), Gaps = 5/109 (4%) Query: 59 SVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIEC 118 + D F ++ G + + + + L++ + + + + L G+ +++ C Sbjct: 39 NQVAERDRALFHELVLGTLRQWFALKSISLPLLSK--PLN--NETVETCLYVGLYQVL-C 93 Query: 119 HSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRSGCVSA 167 + ISE V + +NA+L + +R+ + + G A Sbjct: 94 TRIAAHAAISETVDATKQLGFPALSGIVNAILRRATRETDEFQQGLQQA 142 >gi|312882737|ref|ZP_07742472.1| ribosomal RNA small subunit methyltransferase B [Vibrio caribbenthicus ATCC BAA-2122] gi|309369595|gb|EFP97112.1| ribosomal RNA small subunit methyltransferase B [Vibrio caribbenthicus ATCC BAA-2122] Length = 426 Score = 40.5 bits (94), Expect = 0.079, Method: Composition-based stats. Identities = 22/139 (15%), Positives = 44/139 (31%), Gaps = 16/139 (11%) Query: 20 RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79 R AA L+Q+ G S + + ++ D + I +G + Sbjct: 4 RAAAANVLFQVVDKGHSLSNAL-------------PAAQTTIKPRDYALLQEICYGALRY 50 Query: 80 KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139 ++ + + + + ++ G+ +L +P + E V Sbjct: 51 LPRLESTANQLMDK--PLKGKQRVFHHLILVGLYQLSFMR-IPAHAAVGETVEATKTLKG 107 Query: 140 GDEPKFINAVLDKVSRKEE 158 INAVL R +E Sbjct: 108 PRLRGLINAVLRNYQRNQE 126 >gi|213158779|ref|YP_002321200.1| ribosomal RNA small subunit methyltransferase B [Acinetobacter baumannii AB0057] gi|301345911|ref|ZP_07226652.1| ribosomal RNA small subunit methyltransferase B [Acinetobacter baumannii AB056] gi|301596687|ref|ZP_07241695.1| ribosomal RNA small subunit methyltransferase B [Acinetobacter baumannii AB059] gi|213057939|gb|ACJ42841.1| ribosomal RNA small subunit methyltransferase B [Acinetobacter baumannii AB0057] Length = 434 Score = 40.5 bits (94), Expect = 0.079, Method: Composition-based stats. Identities = 17/105 (16%), Positives = 41/105 (39%), Gaps = 5/105 (4%) Query: 59 SVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIEC 118 + D F ++ G + + + + L++ + + + + L G+ +++ C Sbjct: 39 NQVAERDRALFHELVLGTLRQWFALKSISLPLLSK--PLN--NETVETCLYVGLYQVL-C 93 Query: 119 HSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRSG 163 + ISE V + +NA+L + +R+ E G Sbjct: 94 TRIAAHAAISETVDATKQLGFPALSGIVNAILRRATRETEDFEQG 138 >gi|153837662|ref|ZP_01990329.1| ribosomal RNA small subunit methyltransferase B [Vibrio parahaemolyticus AQ3810] gi|149748952|gb|EDM59779.1| ribosomal RNA small subunit methyltransferase B [Vibrio parahaemolyticus AQ3810] Length = 427 Score = 40.5 bits (94), Expect = 0.079, Method: Composition-based stats. Identities = 18/102 (17%), Positives = 36/102 (35%), Gaps = 3/102 (2%) Query: 57 VESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELI 116 + D + I +G + + +I++ L +K + ++ G+ +L Sbjct: 28 AQQTVRPRDHALLQEICYGALRYLPRL-EMIANQLMDK-PLKGKQRVFHHLILVGIYQLS 85 Query: 117 ECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEE 158 +P + E V + INAVL R +E Sbjct: 86 FMR-IPAHAAVGETVEGTKELKGPRLRGLINAVLRNYQRNQE 126 >gi|328471169|gb|EGF42071.1| 16S rRNA methyltransferase B [Vibrio parahaemolyticus 10329] Length = 427 Score = 40.5 bits (94), Expect = 0.079, Method: Composition-based stats. Identities = 18/102 (17%), Positives = 36/102 (35%), Gaps = 3/102 (2%) Query: 57 VESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELI 116 + D + I +G + + +I++ L +K + ++ G+ +L Sbjct: 28 AQQTVRPRDHALLQEICYGALRYLPRL-EMIANQLMDK-PLKGKQRVFHHLILVGIYQLS 85 Query: 117 ECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEE 158 +P + E V + INAVL R +E Sbjct: 86 FMR-IPAHAAVGETVEGTKELKGPRLRGLINAVLRNYQRNQE 126 >gi|269967001|ref|ZP_06181071.1| sun protein [Vibrio alginolyticus 40B] gi|269828395|gb|EEZ82659.1| sun protein [Vibrio alginolyticus 40B] Length = 427 Score = 40.5 bits (94), Expect = 0.081, Method: Composition-based stats. Identities = 18/102 (17%), Positives = 36/102 (35%), Gaps = 3/102 (2%) Query: 57 VESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELI 116 + D + I +G + + +I++ L +K + ++ G+ +L Sbjct: 28 AQQTVRPRDHALLQEICYGALRYLPRL-EMIANQLMDK-PLKGKQRVFHHLILVGIYQLS 85 Query: 117 ECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEE 158 +P + E V + INAVL R +E Sbjct: 86 FMR-IPAHAAVGETVEGTKELKGPRLRGLINAVLRNYQRNQE 126 >gi|260901337|ref|ZP_05909732.1| ribosomal RNA small subunit methyltransferase B [Vibrio parahaemolyticus AQ4037] gi|308109871|gb|EFO47411.1| ribosomal RNA small subunit methyltransferase B [Vibrio parahaemolyticus AQ4037] Length = 427 Score = 40.5 bits (94), Expect = 0.081, Method: Composition-based stats. Identities = 18/102 (17%), Positives = 36/102 (35%), Gaps = 3/102 (2%) Query: 57 VESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELI 116 + D + I +G + + +I++ L +K + ++ G+ +L Sbjct: 28 AQQTVRPRDHALLQEICYGALRYLPRL-EMIANQLMDK-PLKGKQRVFHHLILVGIYQLS 85 Query: 117 ECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEE 158 +P + E V + INAVL R +E Sbjct: 86 FMR-IPAHAAVGETVEGTKELKGPRLRGLINAVLRNYQRNQE 126 >gi|91226301|ref|ZP_01261141.1| Sun protein [Vibrio alginolyticus 12G01] gi|91189312|gb|EAS75591.1| Sun protein [Vibrio alginolyticus 12G01] Length = 427 Score = 40.5 bits (94), Expect = 0.081, Method: Composition-based stats. Identities = 18/102 (17%), Positives = 36/102 (35%), Gaps = 3/102 (2%) Query: 57 VESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELI 116 + D + I +G + + +I++ L +K + ++ G+ +L Sbjct: 28 AQQTVRPRDHALLQEICYGALRYLPRL-EMIANQLMDK-PLKGKQRVFHHLILVGIYQLS 85 Query: 117 ECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEE 158 +P + E V + INAVL R +E Sbjct: 86 FMR-IPAHAAVGETVEGTKELKGPRLRGLINAVLRNYQRNQE 126 >gi|254229997|ref|ZP_04923398.1| ribosomal RNA small subunit methyltransferase B [Vibrio sp. Ex25] gi|262392829|ref|YP_003284683.1| ribosomal RNA small subunit methyltransferase B [Vibrio sp. Ex25] gi|151937499|gb|EDN56356.1| ribosomal RNA small subunit methyltransferase B [Vibrio sp. Ex25] gi|262336423|gb|ACY50218.1| ribosomal RNA small subunit methyltransferase B [Vibrio sp. Ex25] Length = 427 Score = 40.5 bits (94), Expect = 0.082, Method: Composition-based stats. Identities = 18/102 (17%), Positives = 36/102 (35%), Gaps = 3/102 (2%) Query: 57 VESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELI 116 + D + I +G + + +I++ L +K + ++ G+ +L Sbjct: 28 AQQTVRPRDHALLQEICYGALRYLPRL-EMIANQLMDK-PLKGKQRVFHHLILVGIYQLS 85 Query: 117 ECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEE 158 +P + E V + INAVL R +E Sbjct: 86 FMR-IPAHAAVGETVEGTKELKGPRLRGLINAVLRNYQRNQE 126 >gi|319406332|emb|CBI79969.1| SUN-family protein [Bartonella sp. AR 15-3] Length = 455 Score = 40.5 bits (94), Expect = 0.083, Method: Composition-based stats. Identities = 19/103 (18%), Positives = 36/103 (34%), Gaps = 14/103 (13%) Query: 65 DLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVE 124 D R I+ + + I + +S L + L +L + +++ +P Sbjct: 57 DRLLCRAILGAALRHRSQITVALSHFLVQ--PLPAQAFSLHHLLHISITQILY-LDIPDH 113 Query: 125 VIISEYVCIAH------DFFYGDEPKFINAVLDKVSRKEEIKR 161 I V +A F +NA+L +R+ I R Sbjct: 114 AAIDLAVRVAKIDSRLRRFSG-----LVNAILRNCAREAAILR 151 >gi|293610442|ref|ZP_06692742.1| conserved hypothetical protein [Acinetobacter sp. SH024] gi|292826786|gb|EFF85151.1| conserved hypothetical protein [Acinetobacter sp. SH024] Length = 434 Score = 40.5 bits (94), Expect = 0.085, Method: Composition-based stats. Identities = 17/109 (15%), Positives = 43/109 (39%), Gaps = 5/109 (4%) Query: 59 SVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIEC 118 + D F ++ G + + + + L++ + + + + L G+ +++ C Sbjct: 39 NQVAERDRALFHELVLGTLRQWFALKSISLPLLSK--PLN--NETVETCLYVGLYQVL-C 93 Query: 119 HSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRSGCVSA 167 + ISE V + +NA+L + +R+ + + G A Sbjct: 94 TRIAAHAAISETVDATKQLGFPALSGIVNAILRRATRETDDFQQGLQQA 142 >gi|28899818|ref|NP_799423.1| Sun protein [Vibrio parahaemolyticus RIMD 2210633] gi|260362016|ref|ZP_05775021.1| ribosomal RNA small subunit methyltransferase B [Vibrio parahaemolyticus K5030] gi|260876497|ref|ZP_05888852.1| ribosomal RNA small subunit methyltransferase B [Vibrio parahaemolyticus AN-5034] gi|260897446|ref|ZP_05905942.1| ribosomal RNA small subunit methyltransferase B [Vibrio parahaemolyticus Peru-466] gi|46396865|sp|Q87KD3|RSMB_VIBPA RecName: Full=Ribosomal RNA small subunit methyltransferase B; AltName: Full=16S rRNA m5C967 methyltransferase; AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase rsmB gi|28808070|dbj|BAC61307.1| Sun protein [Vibrio parahaemolyticus RIMD 2210633] gi|308087890|gb|EFO37585.1| ribosomal RNA small subunit methyltransferase B [Vibrio parahaemolyticus Peru-466] gi|308090396|gb|EFO40091.1| ribosomal RNA small subunit methyltransferase B [Vibrio parahaemolyticus AN-5034] gi|308114191|gb|EFO51731.1| ribosomal RNA small subunit methyltransferase B [Vibrio parahaemolyticus K5030] Length = 427 Score = 40.5 bits (94), Expect = 0.085, Method: Composition-based stats. Identities = 18/102 (17%), Positives = 36/102 (35%), Gaps = 3/102 (2%) Query: 57 VESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELI 116 + D + I +G + + +I++ L +K + ++ G+ +L Sbjct: 28 AQQTVRPRDHALLQEICYGALRYLPRL-EMIANQLMDK-PLKGKQRVFHHLILVGIYQLS 85 Query: 117 ECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEE 158 +P + E V + INAVL R +E Sbjct: 86 FMR-IPAHAAVGETVEGTKELKGPRLRGLINAVLRNYQRNQE 126 >gi|239502749|ref|ZP_04662059.1| ribosomal RNA small subunit methyltransferase B [Acinetobacter baumannii AB900] Length = 434 Score = 40.5 bits (94), Expect = 0.085, Method: Composition-based stats. Identities = 17/109 (15%), Positives = 43/109 (39%), Gaps = 5/109 (4%) Query: 59 SVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIEC 118 + D F ++ G + + + + L++ + + + + L G+ +++ C Sbjct: 39 NQVAERDRALFHELVLGTLRQWFALKSISLPLLSK--PLN--NETVETCLYVGLYQVL-C 93 Query: 119 HSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRSGCVSA 167 + ISE V + +NA+L + +R+ + + G A Sbjct: 94 TRIAAHAAISETVDATKQLGFPALSGIVNAILRRATRETDDFQQGLQQA 142 >gi|14521110|ref|NP_126585.1| sun protein (fmu protein) [Pyrococcus abyssi GE5] gi|5458327|emb|CAB49816.1| Sun/NOL1/NOP nucleolar protein [Pyrococcus abyssi GE5] Length = 450 Score = 40.5 bits (94), Expect = 0.086, Method: Composition-based stats. Identities = 22/100 (22%), Positives = 39/100 (39%), Gaps = 2/100 (2%) Query: 56 DVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLEL 115 VE + + + ID +++S L LD+ L ++LR G E+ Sbjct: 37 RVEGKDKETARGIAHAYVFEIEKWRAKIDFILNSVL-RGSKVEDLDLYLANLLRIGTFEM 95 Query: 116 IECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSR 155 V + V + + F + KF NA+L +V + Sbjct: 96 KF-KGVNPAIATDSVVRVVKEKFDLTKAKFANAILREVEK 134 >gi|156972728|ref|YP_001443635.1| cytosine-C5-methylase [Vibrio harveyi ATCC BAA-1116] gi|156524322|gb|ABU69408.1| hypothetical protein VIBHAR_00393 [Vibrio harveyi ATCC BAA-1116] Length = 427 Score = 40.5 bits (94), Expect = 0.087, Method: Composition-based stats. Identities = 18/94 (19%), Positives = 35/94 (37%), Gaps = 3/94 (3%) Query: 65 DLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVE 124 D + I +G + + +I++ L +K + ++ G+ +L +P Sbjct: 36 DHALLQEICYGALRYLPRL-EMIANQLMDK-PLKGKQRVFHHLILVGIYQLSFMR-IPAH 92 Query: 125 VIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEE 158 + E V + INAVL R +E Sbjct: 93 AAVGETVEGTKELKGPRLRGLINAVLRNYQRNQE 126 >gi|323519897|gb|ADX94278.1| tRNA and rRNA cytosine-C5-methylase [Acinetobacter baumannii TCDC-AB0715] Length = 434 Score = 40.5 bits (94), Expect = 0.090, Method: Composition-based stats. Identities = 19/109 (17%), Positives = 43/109 (39%), Gaps = 5/109 (4%) Query: 59 SVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIEC 118 + D F ++ G + + + L+ L++ + + + + L G+ +++ C Sbjct: 39 NQVAERDRALFHELVLGTLRQWFALKLISLPLLSK--PLN--NETVETCLYVGLYQVL-C 93 Query: 119 HSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRSGCVSA 167 + ISE V + +NA+L + +R+ E G A Sbjct: 94 TRIAAHAAISETVDATKQLGFPALSGIVNAILRRATRETEDFEQGLQQA 142 >gi|238898791|ref|YP_002924473.1| 16S rRNA m5C967 methyltransferase, S-adenosyl-L-methionine-dependent [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] gi|229466551|gb|ACQ68325.1| 16S rRNA m5C967 methyltransferase, S-adenosyl-L-methionine-dependent [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] Length = 429 Score = 40.5 bits (94), Expect = 0.090, Method: Composition-based stats. Identities = 28/139 (20%), Positives = 54/139 (38%), Gaps = 16/139 (11%) Query: 20 RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79 R A Q + Q+ G S + ++ E + + + D + + G + Sbjct: 8 RAIAAQIISQVLDKGRSLSVVLPEVQNH-------------VPYKDKALLQELCFGTLRV 54 Query: 80 KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139 ++ + +T + +L +L G+ +LI +P I+SE V A Y Sbjct: 55 LPRLEHCVKHLMTR--PLNAKKRLLHFLLMVGLYQLIYTR-IPPHAILSETVKAAAVLKY 111 Query: 140 GDEPKFINAVLDKVSRKEE 158 INA+L + R++E Sbjct: 112 PQFKGLINAILREFERRKE 130 >gi|269962646|ref|ZP_06176991.1| sun protein [Vibrio harveyi 1DA3] gi|269832569|gb|EEZ86683.1| sun protein [Vibrio harveyi 1DA3] Length = 427 Score = 40.5 bits (94), Expect = 0.091, Method: Composition-based stats. Identities = 18/94 (19%), Positives = 35/94 (37%), Gaps = 3/94 (3%) Query: 65 DLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVE 124 D + I +G + + +I++ L +K + ++ G+ +L +P Sbjct: 36 DHALLQEICYGALRYLPRL-EMIANQLMDK-PLKGKQRVFHHLILVGIYQLSFMR-IPAH 92 Query: 125 VIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEE 158 + E V + INAVL R +E Sbjct: 93 AAVGETVEGTKELKGPRLRGLINAVLRNYQRNQE 126 >gi|323493837|ref|ZP_08098955.1| 16S rRNA methyltransferase B [Vibrio brasiliensis LMG 20546] gi|323311971|gb|EGA65117.1| 16S rRNA methyltransferase B [Vibrio brasiliensis LMG 20546] Length = 426 Score = 40.5 bits (94), Expect = 0.093, Method: Composition-based stats. Identities = 24/147 (16%), Positives = 47/147 (31%), Gaps = 16/147 (10%) Query: 20 RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79 R AA L+Q+ G S + + + D + I +G + Sbjct: 4 RAAAANVLFQVVDKGHSLSNAL-------------PAAQQTIKPRDHALLQEICYGALRY 50 Query: 80 KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139 ++ + + + + + ++ G+ +L +P + E V Sbjct: 51 LPRLESIANELMDK--PLKGKQRVFHHLILVGIYQLSFMR-IPAHAAVGETVEGTKTLKG 107 Query: 140 GDEPKFINAVLDKVSRKEEIKRSGCVS 166 INAVL R +E + VS Sbjct: 108 PRLRGLINAVLRNYQRNQEELDAMAVS 134 >gi|325123992|gb|ADY83515.1| 16S rRNA m5C967 SAM-dependent methyltransferase [Acinetobacter calcoaceticus PHEA-2] Length = 434 Score = 40.1 bits (93), Expect = 0.094, Method: Composition-based stats. Identities = 17/109 (15%), Positives = 43/109 (39%), Gaps = 5/109 (4%) Query: 59 SVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIEC 118 + D F ++ G + + + + L++ + + + + L G+ +++ C Sbjct: 39 NQVAERDRALFHELVLGTLRQWFALKSISLPLLSK--PLN--NETVETCLYVGLYQVL-C 93 Query: 119 HSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRSGCVSA 167 + ISE V + +NA+L + +R+ + + G A Sbjct: 94 TRIAAHAAISETVDATKQLGFPALSGIVNAILRRATRETDDFQQGLQQA 142 >gi|260557781|ref|ZP_05829994.1| ribosomal RNA small subunit methyltransferase B [Acinetobacter baumannii ATCC 19606] gi|260408572|gb|EEX01877.1| ribosomal RNA small subunit methyltransferase B [Acinetobacter baumannii ATCC 19606] Length = 434 Score = 40.1 bits (93), Expect = 0.094, Method: Composition-based stats. Identities = 17/109 (15%), Positives = 43/109 (39%), Gaps = 5/109 (4%) Query: 59 SVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIEC 118 + D F ++ G + + + + L++ + + + + L G+ +++ C Sbjct: 39 NQVAERDRALFHELVLGTLRQWFALKSISLPLLSK--PLN--NETVETCLYVGLYQVL-C 93 Query: 119 HSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRSGCVSA 167 + ISE V + +NA+L + +R+ + + G A Sbjct: 94 TRIAAHAAISETVDATKQLGFPALSGIVNAILRRATRETDDFQQGLQQA 142 >gi|153834294|ref|ZP_01986961.1| ribosomal RNA small subunit methyltransferase B [Vibrio harveyi HY01] gi|148869302|gb|EDL68316.1| ribosomal RNA small subunit methyltransferase B [Vibrio harveyi HY01] Length = 427 Score = 40.1 bits (93), Expect = 0.094, Method: Composition-based stats. Identities = 18/94 (19%), Positives = 35/94 (37%), Gaps = 3/94 (3%) Query: 65 DLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVE 124 D + I +G + + +I++ L +K + ++ G+ +L +P Sbjct: 36 DHALLQEICYGALRYLPRL-EMIANQLMDK-PLKGKQRVFHHLILVGIYQLSFMR-IPAH 92 Query: 125 VIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEE 158 + E V + INAVL R +E Sbjct: 93 AAVGETVEGTKELKGPRLRGLINAVLRNYQRNQE 126 >gi|148251938|ref|YP_001236523.1| putative ribosomal RNA small subunit methyltransferase B [Bradyrhizobium sp. BTAi1] gi|146404111|gb|ABQ32617.1| putative Ribosomal RNA small subunit methyltransferase B [Bradyrhizobium sp. BTAi1] Length = 450 Score = 40.1 bits (93), Expect = 0.094, Method: Composition-based stats. Identities = 20/129 (15%), Positives = 41/129 (31%), Gaps = 14/129 (10%) Query: 37 TTEIISEYETYRFCADTELDVESVYL------HVDLEWFRVIIHGVMDRKQHIDLLISSC 90 +++ D +LD + D R ++ + R + ++S Sbjct: 21 AADVVDGVLHKHRTLDDQLDGTGAHPGLKQLADRDRALMRRLVATTLRRLGTLGHVLSRL 80 Query: 91 LTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKF---IN 147 L S L G +++ VP + V + K+ +N Sbjct: 81 LDRGVPTD--APRAQSALLIGAAQILWM-DVPDHAAVDLSVRLVQA--DRRAAKYAGLVN 135 Query: 148 AVLDKVSRK 156 AVL + +R+ Sbjct: 136 AVLRRCARE 144 >gi|3288668|dbj|BAA31226.1| Fmu [Vibrio alginolyticus] Length = 211 Score = 40.1 bits (93), Expect = 0.095, Method: Composition-based stats. Identities = 18/102 (17%), Positives = 36/102 (35%), Gaps = 3/102 (2%) Query: 57 VESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELI 116 + D + I +G + + +I++ L +K + ++ G+ +L Sbjct: 28 AQQTVRPRDHALLQEICYGALRYLPRL-EMIANQLMDK-PLKGKQRVFHHLILVGIYQLS 85 Query: 117 ECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEE 158 +P + E V + INAVL R +E Sbjct: 86 FMR-IPAHAAVGETVEGTKELKGPRLRGLINAVLRNYQRNQE 126 >gi|317049808|ref|YP_004117456.1| sun protein [Pantoea sp. At-9b] gi|316951425|gb|ADU70900.1| sun protein [Pantoea sp. At-9b] Length = 428 Score = 40.1 bits (93), Expect = 0.096, Method: Composition-based stats. Identities = 20/103 (19%), Positives = 40/103 (38%), Gaps = 3/103 (2%) Query: 57 VESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELI 116 + D + + GVM ++ LIS + + +L ++ G+ +L+ Sbjct: 32 AQKSLSDKDGALLQELCFGVMRTLPQLEALISKLMER--PLTGKQRVLHYLIMVGLYQLL 89 Query: 117 ECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEI 159 VP ++E V A + +N VL + R++E Sbjct: 90 YTR-VPPHAALAETVAGAEVLKRANLKGLLNGVLRQFQRQQEA 131 >gi|184159973|ref|YP_001848312.1| tRNA and rRNA cytosine-C5-methylase [Acinetobacter baumannii ACICU] gi|183211567|gb|ACC58965.1| tRNA and rRNA cytosine-C5-methylase [Acinetobacter baumannii ACICU] gi|322509890|gb|ADX05344.1| 16S rRNA m5C967 SAM-dependent methyltransferase [Acinetobacter baumannii 1656-2] Length = 434 Score = 40.1 bits (93), Expect = 0.097, Method: Composition-based stats. Identities = 17/109 (15%), Positives = 43/109 (39%), Gaps = 5/109 (4%) Query: 59 SVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIEC 118 + D F ++ G + + + + L++ + + + + L G+ +++ C Sbjct: 39 NQVAERDRALFHELVLGTLRQWFALKSISLPLLSK--PLN--NETVETCLYVGLYQVL-C 93 Query: 119 HSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRSGCVSA 167 + ISE V + +NA+L + +R+ + + G A Sbjct: 94 TRIAAHAAISETVDATKQLGFPALSGIVNAILRRATRETDDFQQGLQQA 142 >gi|14590913|ref|NP_142986.1| fmu protein [Pyrococcus horikoshii OT3] gi|3257494|dbj|BAA30177.1| 450aa long hypothetical fmu protein [Pyrococcus horikoshii OT3] Length = 450 Score = 40.1 bits (93), Expect = 0.098, Method: Composition-based stats. Identities = 23/100 (23%), Positives = 38/100 (38%), Gaps = 2/100 (2%) Query: 56 DVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLEL 115 VE + + + ID +++S L + LD L ++LR G E+ Sbjct: 37 RVEGKDKETARGIAHAYVFEIEKWRAKIDFILNSVL-KGSRVEDLDTYLANLLRIGTFEM 95 Query: 116 IECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSR 155 V + V + + F KF NAVL +V + Sbjct: 96 KF-KGVNPAIATDSVVRVVKEKFDLTRAKFANAVLREVEK 134 >gi|89074758|ref|ZP_01161216.1| Putative Sun protein [Photobacterium sp. SKA34] gi|89049522|gb|EAR55083.1| Putative Sun protein [Photobacterium sp. SKA34] Length = 426 Score = 40.1 bits (93), Expect = 0.10, Method: Composition-based stats. Identities = 22/147 (14%), Positives = 50/147 (34%), Gaps = 16/147 (10%) Query: 20 RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79 R A + +YQ+ G S + + + D + I +GV+ Sbjct: 4 RATAAKVIYQVVDQGQSLSAAL-------------PAAQQDIRERDHALLQEICYGVLRW 50 Query: 80 KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139 ++ + + + + + ++ G+ +L +P ++E V Sbjct: 51 LPRLESITQALMDK--PLKGKQRVFHHLILVGLYQLGYMR-IPAHAAVAETVNATKTLKK 107 Query: 140 GDEPKFINAVLDKVSRKEEIKRSGCVS 166 INA+L R++E + +S Sbjct: 108 PQLRGLINAILRNYQRQQETLDAQAIS 134 >gi|160872609|ref|ZP_02062741.1| ribosomal RNA small subunit methyltransferase B [Rickettsiella grylli] gi|159121408|gb|EDP46746.1| ribosomal RNA small subunit methyltransferase B [Rickettsiella grylli] Length = 442 Score = 40.1 bits (93), Expect = 0.10, Method: Composition-based stats. Identities = 30/136 (22%), Positives = 58/136 (42%), Gaps = 9/136 (6%) Query: 37 TTEIISEYETYRFCADTEL--DVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEK 94 IIS + + +T L +V S D + + + +GV+ + +SS L +K Sbjct: 8 AAHIISRFLKKKIALNTILFAEVPSGIDVRDRAFIQELCYGVIRWYFPL-KKLSSFLLKK 66 Query: 95 WSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVS 154 S +R D + +++ G+ +L + P + E V A + IN VL Sbjct: 67 -SLNRSDQDIYALVLVGLYQLNYLNISPHA-AVYETVQAAKELRKRWAAPLINGVLRSFQ 124 Query: 155 RKEEIKRSGCVSAITQ 170 R+ ++G + ++Q Sbjct: 125 RQ----KTGLLKKVSQ 136 >gi|225677037|ref|ZP_03788046.1| N utilization substance protein B, putative [Wolbachia endosymbiont of Muscidifurax uniraptor] gi|225590913|gb|EEH12131.1| N utilization substance protein B, putative [Wolbachia endosymbiont of Muscidifurax uniraptor] Length = 82 Score = 40.1 bits (93), Expect = 0.10, Method: Composition-based stats. Identities = 14/83 (16%), Positives = 32/83 (38%), Gaps = 1/83 (1%) Query: 3 IQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYL 62 +++ D K +R AR AVQ Y +G + + E + + D+ Sbjct: 1 MEEKPVDKKWRIKRSTARFLAVQIAYSNIFVGYNKSTFKLENCELKDYINKLKDIFECE- 59 Query: 63 HVDLEWFRVIIHGVMDRKQHIDL 85 + ++ +++ V+ + D Sbjct: 60 EFEHQFLENLLYKVIKSSEEYDK 82 >gi|169634914|ref|YP_001708650.1| 16S rRNA m5C967 SAM-dependent methyltransferase [Acinetobacter baumannii SDF] gi|169153706|emb|CAP02904.1| 16S rRNA m5C967 SAM-dependent methyltransferase [Acinetobacter baumannii] Length = 434 Score = 40.1 bits (93), Expect = 0.11, Method: Composition-based stats. Identities = 17/109 (15%), Positives = 43/109 (39%), Gaps = 5/109 (4%) Query: 59 SVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIEC 118 + D F ++ G + + + + L++ + + + + L G+ +++ C Sbjct: 39 NQVAERDRALFHELVLGTLRQWFALKSISLPLLSK--PLN--NETVETCLYVGLYQVL-C 93 Query: 119 HSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRSGCVSA 167 + ISE V + +NA+L + +R+ + + G A Sbjct: 94 TRIAAHAAISETVDATKQLGFPALSGIVNAILRRATRETDDFQQGLQQA 142 >gi|163803318|ref|ZP_02197196.1| methionyl-tRNA formyltransferase [Vibrio sp. AND4] gi|159172888|gb|EDP57727.1| methionyl-tRNA formyltransferase [Vibrio sp. AND4] Length = 427 Score = 40.1 bits (93), Expect = 0.11, Method: Composition-based stats. Identities = 18/94 (19%), Positives = 35/94 (37%), Gaps = 3/94 (3%) Query: 65 DLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVE 124 D + I +G + + +I++ L +K + ++ G+ +L +P Sbjct: 36 DHALLQEICYGALRYLPRL-EMIANQLMDK-PLKGKQRVFHHLILVGIYQLSFMR-IPAH 92 Query: 125 VIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEE 158 + E V + INAVL R +E Sbjct: 93 AAVGETVEGTKELKGPRLRGLINAVLRNYQRSQE 126 >gi|90581174|ref|ZP_01236973.1| Putative Sun protein [Vibrio angustum S14] gi|90437695|gb|EAS62887.1| Putative Sun protein [Vibrio angustum S14] Length = 426 Score = 40.1 bits (93), Expect = 0.11, Method: Composition-based stats. Identities = 21/139 (15%), Positives = 47/139 (33%), Gaps = 16/139 (11%) Query: 20 RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79 R A + +YQ+ G S + + + D + I +GV+ Sbjct: 4 RATAAKVIYQVVDQGQSLSAAL-------------PAAQQDIRERDHALLQEICYGVLRW 50 Query: 80 KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139 ++ + + + + + ++ G+ +L +P ++E V Sbjct: 51 LPRLESITQALMDK--PLKGKQRVFHHLILVGLYQLGYMR-IPAHAAVAETVNATKTLKK 107 Query: 140 GDEPKFINAVLDKVSRKEE 158 INA+L R++E Sbjct: 108 PQLRGLINAILRNYQRQQE 126 >gi|241668134|ref|ZP_04755712.1| tRNA and rRNA cytosine-C5-methylase, sun protein [Francisella philomiragia subsp. philomiragia ATCC 25015] gi|254876669|ref|ZP_05249379.1| tRNA and rRNA cytosine-C5-methylase [Francisella philomiragia subsp. philomiragia ATCC 25015] gi|254842690|gb|EET21104.1| tRNA and rRNA cytosine-C5-methylase [Francisella philomiragia subsp. philomiragia ATCC 25015] Length = 425 Score = 40.1 bits (93), Expect = 0.11, Method: Composition-based stats. Identities = 23/127 (18%), Positives = 46/127 (36%), Gaps = 8/127 (6%) Query: 32 IIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCL 91 I S +II + +E D + +++ + ++ + S L Sbjct: 6 IAAKSILDIIDN--KHSLLTIEHKLIEHNLSDKDKSFVKLLCYEFFRNYYSLENVASLYL 63 Query: 92 TEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLD 151 EK +++ IL+ + E+ + P I+E V + K +N VL Sbjct: 64 AEKTKLKAKILVMLGILQ--IFEINQ----PHYASINETVAACKNLKILWAKKLVNGVLR 117 Query: 152 KVSRKEE 158 ++ R E Sbjct: 118 QIVRDLE 124 >gi|261342758|ref|ZP_05970616.1| ribosomal RNA small subunit methyltransferase B [Enterobacter cancerogenus ATCC 35316] gi|288314937|gb|EFC53875.1| ribosomal RNA small subunit methyltransferase B [Enterobacter cancerogenus ATCC 35316] Length = 428 Score = 40.1 bits (93), Expect = 0.11, Method: Composition-based stats. Identities = 19/130 (14%), Positives = 48/130 (36%), Gaps = 12/130 (9%) Query: 32 IIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCL 91 + + ++I + ++ ++ ++ D + + GV+ ++ +IS + Sbjct: 9 MAAQAVEKVIEQGQS---LSNVLPPLQQKVSDKDKALLQELCFGVLRTLSQLEWMISRLM 65 Query: 92 TEKWSFSRLDMILCSI---LRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINA 148 + S+ + G +L+ +P ++E V A IN Sbjct: 66 ARP-----MTGKQRSVHYLIMVGFYQLLHTR-IPPHAALAETVEGAIAIKRPQLKGLING 119 Query: 149 VLDKVSRKEE 158 VL + R++E Sbjct: 120 VLRQFQRQQE 129 >gi|307132808|ref|YP_003884824.1| Ribosomal RNA small subunit methyltransferase B [Dickeya dadantii 3937] gi|306530337|gb|ADN00268.1| Ribosomal RNA small subunit methyltransferase B [Dickeya dadantii 3937] Length = 431 Score = 40.1 bits (93), Expect = 0.11, Method: Composition-based stats. Identities = 19/101 (18%), Positives = 38/101 (37%), Gaps = 3/101 (2%) Query: 58 ESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIE 117 + D + I GV+ +D + + + + +L +L G+ +LI Sbjct: 33 QRDISEKDRGLLQEICFGVLRVLPQLDWHLRQLMAK--PLTGKQKVLHYLLMVGLYQLIH 90 Query: 118 CHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEE 158 +P ++E V A IN VL + R+++ Sbjct: 91 TR-IPPHAALAETVNGAVALKRPQLKGLINGVLRQFQRQQD 130 >gi|32491213|ref|NP_871467.1| hypothetical protein WGLp464 [Wigglesworthia glossinidia endosymbiont of Glossina brevipalpis] gi|25166420|dbj|BAC24610.1| nusB [Wigglesworthia glossinidia endosymbiont of Glossina brevipalpis] Length = 41 Score = 40.1 bits (93), Expect = 0.11, Method: Composition-based stats. Identities = 11/25 (44%), Positives = 12/25 (48%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEI 40 R AR A+QALY I EI Sbjct: 6 RSYARQCALQALYSWQISRNDAIEI 30 >gi|330447314|ref|ZP_08310964.1| ribosomal RNA small subunit methyltransferase B [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] gi|328491505|dbj|GAA05461.1| ribosomal RNA small subunit methyltransferase B [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] Length = 426 Score = 40.1 bits (93), Expect = 0.11, Method: Composition-based stats. Identities = 21/139 (15%), Positives = 47/139 (33%), Gaps = 16/139 (11%) Query: 20 RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79 R A + +YQ+ G S + + + D + I +GV+ Sbjct: 4 RATAAKVIYQVVDQGQSLSAAL-------------PAAQQDIRERDHALLQEICYGVLRW 50 Query: 80 KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139 ++ + + + + + ++ G+ +L +P ++E V Sbjct: 51 LPRLESITQALMDK--PLKGKQRVFHHLILVGLYQLGYMR-IPAHAAVAETVNATKTLKK 107 Query: 140 GDEPKFINAVLDKVSRKEE 158 INA+L R++E Sbjct: 108 PQLRGLINAILRNYQRQQE 126 >gi|261378986|ref|ZP_05983559.1| ribosomal RNA small subunit methyltransferase B [Neisseria cinerea ATCC 14685] gi|269144601|gb|EEZ71019.1| ribosomal RNA small subunit methyltransferase B [Neisseria cinerea ATCC 14685] Length = 419 Score = 40.1 bits (93), Expect = 0.12, Method: Composition-based stats. Identities = 23/126 (18%), Positives = 48/126 (38%), Gaps = 17/126 (13%) Query: 34 GCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTE 93 G + +++++ T A L + D+ + G + +++ L + Sbjct: 20 GRNLQDVLAQIRT----AHPNLTAQENGALQDIAY------GCQRYLGSLKHMLAQMLKK 69 Query: 94 KWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVC-IAHDFFYGDEPKFINAVLDK 152 + L S+L A + +L + V+ +E V IA G F NA+L + Sbjct: 70 --PID--NPQLESLLLAALYQLHYTRNATHAVV-NEAVESIAKI-GRGQYRSFANAILRR 123 Query: 153 VSRKEE 158 R+ + Sbjct: 124 FLRERD 129 >gi|254525327|ref|ZP_05137382.1| ribosomal RNA small subunit methyltransferase B [Stenotrophomonas sp. SKA14] gi|219722918|gb|EED41443.1| ribosomal RNA small subunit methyltransferase B [Stenotrophomonas sp. SKA14] Length = 443 Score = 40.1 bits (93), Expect = 0.12, Method: Composition-based stats. Identities = 19/100 (19%), Positives = 38/100 (38%), Gaps = 3/100 (3%) Query: 65 DLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVE 124 D + V+ R+ D + S + + S D L ++L G +L + +P Sbjct: 52 DRALLEALCFAVLRRRSTYDAALQSWMQK--PLSARDADLRTLLMVGFAQL-DVLELPAH 108 Query: 125 VIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRSGC 164 +S V A + +NA+L + R+ ++ Sbjct: 109 AALSATVDAARALGRERQAGLVNAILRRAQREGFPEQPAR 148 >gi|270264342|ref|ZP_06192608.1| hypothetical protein SOD_h00090 [Serratia odorifera 4Rx13] gi|270041478|gb|EFA14576.1| hypothetical protein SOD_h00090 [Serratia odorifera 4Rx13] Length = 429 Score = 39.7 bits (92), Expect = 0.13, Method: Composition-based stats. Identities = 23/139 (16%), Positives = 51/139 (36%), Gaps = 16/139 (11%) Query: 20 RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79 R A +A+ Q+ G S + ++ ++ D + + G + Sbjct: 8 RSHAAKAIGQVLDQGQSLSTVL-------------PSLQKTISDKDRALLQELCFGTLRV 54 Query: 80 KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139 ++ I + + + + L +L G+ +L+ +P +++E V A Sbjct: 55 LPQLEWCIQQLMAKPMTGKQ--RTLHYLLMVGLYQLLYTR-IPAHAVLAETVEGAVALKR 111 Query: 140 GDEPKFINAVLDKVSRKEE 158 IN VL + R++E Sbjct: 112 PQLKGLINGVLRQFQRQQE 130 >gi|295396524|ref|ZP_06806684.1| ribosomal RNA small subunit methyltransferase B [Brevibacterium mcbrellneri ATCC 49030] gi|294970642|gb|EFG46557.1| ribosomal RNA small subunit methyltransferase B [Brevibacterium mcbrellneri ATCC 49030] Length = 494 Score = 39.7 bits (92), Expect = 0.14, Method: Composition-based stats. Identities = 16/104 (15%), Positives = 38/104 (36%), Gaps = 7/104 (6%) Query: 57 VESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELI 116 + D + +G + ++ D +I +++ + + +R G +++ Sbjct: 68 ERTRMSGPDAAMCTEMTYGTLRARRFYDAVIEKVSDR--PVDQIEAAVLNAMRLGAHQVL 125 Query: 117 ECHSVPVEVIISEYVCIAHDFFYGD----EPKFINAVLDKVSRK 156 V +SE V + F+NAVL +++ K Sbjct: 126 AMR-VADHAAVSETVGVISKNADTKIANRAAGFVNAVLRRITEK 168 >gi|224826197|ref|ZP_03699300.1| sun protein [Lutiella nitroferrum 2002] gi|224601834|gb|EEG08014.1| sun protein [Lutiella nitroferrum 2002] Length = 416 Score = 39.7 bits (92), Expect = 0.15, Method: Composition-based stats. Identities = 20/129 (15%), Positives = 42/129 (32%), Gaps = 5/129 (3%) Query: 30 IDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISS 89 I ++ E + T + + I +GV+ ++ Sbjct: 4 IQLLAAGLLEKVEGGRTLTEALADAQRQAPDLTPAERGALQDIGYGVLRHLAEWRRVLRQ 63 Query: 90 CLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAV 149 L + +L+ + L + +L + V+ +E V +A G +NAV Sbjct: 64 LLPKPLPEPQLERV----LIVALHQLEYTRAAQYAVV-NEAVTLAGRLARGRFKGLVNAV 118 Query: 150 LDKVSRKEE 158 L R+ + Sbjct: 119 LRNYLRQRD 127 >gi|322831104|ref|YP_004211131.1| sun protein [Rahnella sp. Y9602] gi|321166305|gb|ADW72004.1| sun protein [Rahnella sp. Y9602] Length = 429 Score = 39.7 bits (92), Expect = 0.15, Method: Composition-based stats. Identities = 24/139 (17%), Positives = 50/139 (35%), Gaps = 16/139 (11%) Query: 20 RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79 R A QA+ Q+ G S + ++ ++ D + + G + Sbjct: 8 RSIAAQAISQVLDKGLSLSTVL-------------PGLQKNVSEKDRGLLQELCFGTLRV 54 Query: 80 KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139 ++ + + + + L +L G+ +LI +P +++E V A Sbjct: 55 LPQLEWCLQQLMAK--PLTGKQRTLHYLLMVGLYQLIHTR-IPAHAVLAETVDGAVALKR 111 Query: 140 GDEPKFINAVLDKVSRKEE 158 IN VL + R++E Sbjct: 112 PQLKGLINGVLRQFQRQQE 130 >gi|299768269|ref|YP_003730295.1| tRNA and rRNA cytosine-C5-methylase [Acinetobacter sp. DR1] gi|298698357|gb|ADI88922.1| tRNA and rRNA cytosine-C5-methylase [Acinetobacter sp. DR1] Length = 434 Score = 39.7 bits (92), Expect = 0.15, Method: Composition-based stats. Identities = 17/109 (15%), Positives = 43/109 (39%), Gaps = 5/109 (4%) Query: 59 SVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIEC 118 + D F ++ G + + + + L++ + + + + L G+ +++ C Sbjct: 39 NQVAERDRALFHELVLGTLRQWFALKSISLPLLSK--PLN--NETVETCLYVGLYQVL-C 93 Query: 119 HSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRSGCVSA 167 + ISE V + +NA+L + +R+ + + G A Sbjct: 94 TRIAAHAAISETVDATKQLGFPALGGIVNAILRRATRETDDFQQGLQQA 142 >gi|162148166|ref|YP_001602627.1| ribosomal RNA small subunit methyltransferase B [Gluconacetobacter diazotrophicus PAl 5] gi|161786743|emb|CAP56326.1| putative ribosomal RNA small subunit methyltransferase B [Gluconacetobacter diazotrophicus PAl 5] Length = 433 Score = 39.7 bits (92), Expect = 0.15, Method: Composition-based stats. Identities = 13/80 (16%), Positives = 31/80 (38%), Gaps = 6/80 (7%) Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135 V+ +++ L ++ + ++L GV +++ P + V +A Sbjct: 70 VLRHMGTAGMVLEPFLKKEPPL----PV-RTVLLIGVAQILF-LDTPAHAAVGTAVSLAR 123 Query: 136 DFFYGDEPKFINAVLDKVSR 155 +NAVL +V++ Sbjct: 124 RRGLVPFAGLVNAVLRRVAQ 143 >gi|307822766|ref|ZP_07652997.1| sun protein [Methylobacter tundripaludum SV96] gi|307736370|gb|EFO07216.1| sun protein [Methylobacter tundripaludum SV96] Length = 435 Score = 39.3 bits (91), Expect = 0.16, Method: Composition-based stats. Identities = 22/101 (21%), Positives = 40/101 (39%), Gaps = 7/101 (6%) Query: 58 ESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIE 117 S+ D + + + +GV + +D ++S L + D+ ++ G+ +L Sbjct: 30 PSIESSKDRAFIQALCYGVCRQYHRLDFILSQLLDK--PLKDTDVKSLAL--VGLYQLKF 85 Query: 118 CHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEE 158 P +SE V A INAVL R++E Sbjct: 86 MRVKPHA-AVSETVLAARK--KPWAKSLINAVLRTYLREQE 123 >gi|300024959|ref|YP_003757570.1| sun protein [Hyphomicrobium denitrificans ATCC 51888] gi|299526780|gb|ADJ25249.1| sun protein [Hyphomicrobium denitrificans ATCC 51888] Length = 468 Score = 39.3 bits (91), Expect = 0.16, Method: Composition-based stats. Identities = 27/145 (18%), Positives = 51/145 (35%), Gaps = 29/145 (20%) Query: 18 IARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVM 77 +AR AV AL+ + + ++ ++ R A D + R+I V+ Sbjct: 38 LARDVAVSALFSVLVEKRPFDDVFAKAAAARNLA-----------PRDRAFARLIATTVL 86 Query: 78 DRKQHIDLLISSCLTEKWS--FSRLDMILCSILRAGVLELIECHSVPVEVIISEYVC--- 132 + + ++ + L + RL+ IL + + P IS V Sbjct: 87 RNRGSLQAVLRTYLEKPLPEHLGRLEQILLA-----AAAQLLLIKTPPHAAISLAVDQCR 141 Query: 133 ---IAHDFFYGDEPKFINAVLDKVS 154 + F +NAVL ++S Sbjct: 142 ADRVGKRFGN-----LVNAVLRRLS 161 >gi|190576005|ref|YP_001973850.1| putative sun protein [Stenotrophomonas maltophilia K279a] gi|190013927|emb|CAQ47567.1| putative sun protein [Stenotrophomonas maltophilia K279a] Length = 443 Score = 39.3 bits (91), Expect = 0.17, Method: Composition-based stats. Identities = 18/100 (18%), Positives = 38/100 (38%), Gaps = 3/100 (3%) Query: 65 DLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVE 124 D + V+ R+ D + + + + S D L ++L G +L + +P Sbjct: 52 DRALLEALCFAVLRRRSTYDAALQAWMQK--PLSARDADLRTLLMVGFAQL-DVLELPAH 108 Query: 125 VIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRSGC 164 +S V A + +NA+L + R+ ++ Sbjct: 109 AALSATVDAARALGRERQAGLVNAILRRAQREGVPEQPAR 148 >gi|188535245|ref|YP_001909042.1| 16S rRNA methyltransferase B [Erwinia tasmaniensis Et1/99] gi|224493254|sp|B2VK95|RSMB_ERWT9 RecName: Full=Ribosomal RNA small subunit methyltransferase B; AltName: Full=16S rRNA m5C967 methyltransferase; AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase rsmB gi|188030287|emb|CAO98176.1| rRNA methylase Sun [Erwinia tasmaniensis Et1/99] Length = 429 Score = 39.3 bits (91), Expect = 0.17, Method: Composition-based stats. Identities = 17/125 (13%), Positives = 44/125 (35%), Gaps = 9/125 (7%) Query: 37 TTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWS 96 I E + ++ + D + + +GV+ ++ +I ++ Sbjct: 12 AQTIEKVVEQGQSLSNVLPAAQKSVGDKDAALLQELCYGVLRTLPQLEWVIGRLMSRP-- 69 Query: 97 FSRLDMILCSI---LRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKV 153 + ++ + G+ +L+ +P ++E V A IN VL + Sbjct: 70 ---MTGKQRAVHFLIMVGLYQLMFTR-IPAHAALAETVEGAVALKRPQLKGLINGVLRQF 125 Query: 154 SRKEE 158 R+++ Sbjct: 126 QRQQD 130 >gi|116628135|ref|YP_820754.1| RNA-binding protein [Streptococcus thermophilus LMD-9] gi|116101412|gb|ABJ66558.1| tRNA and rRNA cytosine-C5-methylase [Streptococcus thermophilus LMD-9] Length = 442 Score = 39.3 bits (91), Expect = 0.17, Method: Composition-based stats. Identities = 26/152 (17%), Positives = 51/152 (33%), Gaps = 35/152 (23%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 + AR A++ L E+ E Y A S D I++G Sbjct: 8 KKTARGQALEVL----------EEVFQE-GAYSNIALNARLSNSCLTDKDKALVTEIVYG 56 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVL----------ELIECHSVPVEV 125 + RK ++ +++ + ++ +L +P Sbjct: 57 TVARKITLEWILAHVIEDRDKLE-------------AWVYDLLLLSLYQLAYLDKIPSHA 103 Query: 126 IISEYVCIAHDFFYGDEP-KFINAVLDKVSRK 156 ++++ V IA + K +NAVL K+S + Sbjct: 104 VVNDAVSIAKNRGNKKGAEKLVNAVLRKLSSQ 135 >gi|329295652|ref|ZP_08252988.1| 16S rRNA methyltransferase B [Plautia stali symbiont] Length = 428 Score = 39.3 bits (91), Expect = 0.18, Method: Composition-based stats. Identities = 17/103 (16%), Positives = 40/103 (38%), Gaps = 3/103 (2%) Query: 57 VESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELI 116 + + D + + GV ++ LI+ + + +L ++ G+ +L+ Sbjct: 32 AQKTLANNDGALLQELCFGVTRTLPQLEALINKLMAR--PLTGKQRVLHYLIMVGLYQLL 89 Query: 117 ECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEI 159 VP ++E V A + +N VL + R+++ Sbjct: 90 YTR-VPPHAALAETVAGAEALKRANLKGLLNGVLRQFQRQQDA 131 >gi|312278741|gb|ADQ63398.1| Ribosomal RNA small subunit methyltransferase B [Streptococcus thermophilus ND03] Length = 440 Score = 39.3 bits (91), Expect = 0.18, Method: Composition-based stats. Identities = 26/152 (17%), Positives = 51/152 (33%), Gaps = 35/152 (23%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 + AR A++ L E+ E Y A S D I++G Sbjct: 6 KKTARGQALEVL----------EEVFQE-GAYSNIALNARLSNSCLTDKDKALVTEIVYG 54 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVL----------ELIECHSVPVEV 125 + RK ++ +++ + ++ +L +P Sbjct: 55 TVARKITLEWILAHVIEDRDKLE-------------AWVYDLLLLSLYQLAYLDKIPSHA 101 Query: 126 IISEYVCIAHDFFYGDEP-KFINAVLDKVSRK 156 ++++ V IA + K +NAVL K+S + Sbjct: 102 VVNDAVSIAKNRGNKKGAEKLVNAVLRKLSSQ 133 >gi|55821413|ref|YP_139855.1| RNA-binding protein [Streptococcus thermophilus LMG 18311] gi|55823338|ref|YP_141779.1| RNA-binding protein [Streptococcus thermophilus CNRZ1066] gi|55737398|gb|AAV61040.1| RNA-binding protein [Streptococcus thermophilus LMG 18311] gi|55739323|gb|AAV62964.1| RNA-binding protein [Streptococcus thermophilus CNRZ1066] Length = 443 Score = 39.3 bits (91), Expect = 0.18, Method: Composition-based stats. Identities = 26/152 (17%), Positives = 51/152 (33%), Gaps = 35/152 (23%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 + AR A++ L E+ E Y A S D I++G Sbjct: 9 KKTARGQALEVL----------EEVFQE-GAYSNIALNARLSNSCLTDKDKALVTEIVYG 57 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVL----------ELIECHSVPVEV 125 + RK ++ +++ + ++ +L +P Sbjct: 58 TVARKITLEWILAHVIEDRDKLE-------------AWVYDLLLLSLYQLAYLDKIPSHA 104 Query: 126 IISEYVCIAHDFFYGDEP-KFINAVLDKVSRK 156 ++++ V IA + K +NAVL K+S + Sbjct: 105 VVNDAVSIAKNRGNKKGAEKLVNAVLRKLSSQ 136 >gi|149375620|ref|ZP_01893389.1| Fmu, rRNA SAM-dependent methyltransferase [Marinobacter algicola DG893] gi|149360022|gb|EDM48477.1| Fmu, rRNA SAM-dependent methyltransferase [Marinobacter algicola DG893] Length = 433 Score = 39.3 bits (91), Expect = 0.18, Method: Composition-based stats. Identities = 12/102 (11%), Positives = 32/102 (31%), Gaps = 3/102 (2%) Query: 59 SVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIEC 118 + + + +G +D + + L + + + ++ ++ + +L Sbjct: 34 GDVADNERPPLQALCYGTCRWFHRLDGELQARLNK--PLRKSNRVVHHLMLVALFQLRFS 91 Query: 119 HSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIK 160 I++E V +N VL R+ E Sbjct: 92 QQATYA-ILNETVEACRALDKPHLTGLVNGVLRAAEREGEPP 132 >gi|119475266|ref|ZP_01615619.1| sun protein [marine gamma proteobacterium HTCC2143] gi|119451469|gb|EAW32702.1| sun protein [marine gamma proteobacterium HTCC2143] Length = 434 Score = 39.3 bits (91), Expect = 0.18, Method: Composition-based stats. Identities = 21/101 (20%), Positives = 39/101 (38%), Gaps = 3/101 (2%) Query: 58 ESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIE 117 E D +R + +GV+ ++ I+ L +K D + ++ G+ +L E Sbjct: 33 EQQVAEKDRSLYRQLCYGVLRFYPKLNG-IAKLLIQK-PLKGKDHDVLMLVLIGIYQLSE 90 Query: 118 CHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEE 158 +P +S V F+N VL + R E+ Sbjct: 91 MR-IPDHAAVSTTVNATKSLKKHWAKGFVNGVLRQWQRNEQ 130 >gi|157372746|ref|YP_001480735.1| 16S rRNA methyltransferase B [Serratia proteamaculans 568] gi|224493268|sp|A8GKG7|RSMB_SERP5 RecName: Full=Ribosomal RNA small subunit methyltransferase B; AltName: Full=16S rRNA m5C967 methyltransferase; AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase rsmB gi|157324510|gb|ABV43607.1| sun protein [Serratia proteamaculans 568] Length = 429 Score = 39.3 bits (91), Expect = 0.18, Method: Composition-based stats. Identities = 17/104 (16%), Positives = 39/104 (37%), Gaps = 3/104 (2%) Query: 55 LDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLE 114 ++ D + + G + ++ I + + + + L +L G+ + Sbjct: 30 PSLQKTISDKDRALLQELCFGTLRVLPQLEWCIQQLMAKPMTGKQ--RTLHYLLMVGLYQ 87 Query: 115 LIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEE 158 L+ +P +++E V A IN VL + R++E Sbjct: 88 LLYTR-IPAHAVLAETVEGAVALKRPQLKGLINGVLRQFQRQQE 130 >gi|259417637|ref|ZP_05741556.1| Fmu [Silicibacter sp. TrichCH4B] gi|259346543|gb|EEW58357.1| Fmu [Silicibacter sp. TrichCH4B] Length = 436 Score = 39.3 bits (91), Expect = 0.19, Method: Composition-based stats. Identities = 27/139 (19%), Positives = 52/139 (37%), Gaps = 21/139 (15%) Query: 17 GIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGV 76 AR AAV L +++ E A+ + V D + + V Sbjct: 21 SDARRAAVTLL----------DKVLGEGL---LLAECQTQVLERLEPADRARAQRLALEV 67 Query: 77 MDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCI-AH 135 + + D +++ L + + + + LR G +EL C ++++ V + A Sbjct: 68 LRSLERADRVLAKHLRKPPALH-----VRNALRLGTVEL--CSGGAAHGVVNDIVNLVAR 120 Query: 136 DFFYGDEPKFINAVLDKVS 154 + +NAVL KV+ Sbjct: 121 HRRHAQLKGLVNAVLRKVA 139 >gi|260574499|ref|ZP_05842503.1| Fmu (Sun) domain protein [Rhodobacter sp. SW2] gi|259023395|gb|EEW26687.1| Fmu (Sun) domain protein [Rhodobacter sp. SW2] Length = 427 Score = 39.3 bits (91), Expect = 0.19, Method: Composition-based stats. Identities = 19/97 (19%), Positives = 36/97 (37%), Gaps = 11/97 (11%) Query: 65 DLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVE 124 D + + V+ + D ++ L ++ + + LR V+EL H+ Sbjct: 48 DRARAQRLALAVLRHIEPADRVLKPHLRKEPP----EAV-RIALRLAVVELAVEHAAAHG 102 Query: 125 VIISEYVCI---AHDFFYGDEPKFINAVLDKVSRKEE 158 V+ + V + +NAVL KV+ E Sbjct: 103 VV-NAAVSLMRLGKR--TTHMAGLVNAVLRKVAEVPE 136 >gi|332976014|gb|EGK12885.1| rRNA (cytosine-C(5)-)-methyltransferase [Psychrobacter sp. 1501(2011)] Length = 530 Score = 39.3 bits (91), Expect = 0.19, Method: Composition-based stats. Identities = 15/94 (15%), Positives = 37/94 (39%), Gaps = 5/94 (5%) Query: 65 DLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVE 124 D + ++ + + L+ S L++ +++ + ++ G+ +L+ +V Sbjct: 50 DKGFAHALLLTTLRHWYATERLLDS-LSDN-PIDEIEV--RTTIQVGITQLLY-LNVADH 104 Query: 125 VIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEE 158 I E V +NA+L KV++ Sbjct: 105 AAIHETVEAVKHIDLARASGLVNAILRKVAKNPN 138 >gi|195028738|ref|XP_001987233.1| GH20082 [Drosophila grimshawi] gi|193903233|gb|EDW02100.1| GH20082 [Drosophila grimshawi] Length = 674 Score = 39.3 bits (91), Expect = 0.19, Method: Composition-based stats. Identities = 15/82 (18%), Positives = 34/82 (41%), Gaps = 4/82 (4%) Query: 5 DNKKDLKLSHRRGIARLAA--VQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYL 62 D K + +R + A +QA++Q+ + G ++ E ++L+ Sbjct: 118 PKHPDYKYNAKRSVYGELAAPLQAVFQMPLTGPEIFAVLKELRGRYRRELSKLNSLGGKY 177 Query: 63 HVDLEWFRVI--IHGVMDRKQH 82 L +F + + GV++ K+ Sbjct: 178 KSRLWYFEKMHFLRGVIEHKRA 199 >gi|167627567|ref|YP_001678067.1| tRNA and rRNA cytosine-C5-methylase, sun protein [Francisella philomiragia subsp. philomiragia ATCC 25017] gi|167597568|gb|ABZ87566.1| tRNA and rRNA cytosine-C5-methylase, sun protein [Francisella philomiragia subsp. philomiragia ATCC 25017] Length = 425 Score = 39.3 bits (91), Expect = 0.19, Method: Composition-based stats. Identities = 23/127 (18%), Positives = 47/127 (37%), Gaps = 8/127 (6%) Query: 32 IIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCL 91 + S +II Y +E D + +++ + ++ + S L Sbjct: 6 VAAKSILDIIDN--RYSLLTIEHKLIEHNLSDKDKSFVKLLCYEFFRNYYSLENVASLYL 63 Query: 92 TEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLD 151 EK + +++ IL+ + E+ + P I+E V + K +N VL Sbjct: 64 AEKTKLNAKILVMLGILQ--IFEINQ----PHYASINETVSACKNLKILWAKKLVNGVLR 117 Query: 152 KVSRKEE 158 ++ R E Sbjct: 118 QIVRDLE 124 >gi|330890235|gb|EGH22896.1| 16S rRNA methyltransferase B [Pseudomonas syringae pv. mori str. 301020] Length = 448 Score = 39.3 bits (91), Expect = 0.19, Method: Composition-based stats. Identities = 20/95 (21%), Positives = 33/95 (34%), Gaps = 3/95 (3%) Query: 65 DLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVE 124 D + + G + + L + L + F D + ++L G+ +L +P Sbjct: 36 DRGLTQDLAFGTARWQPRLSALAAKLLQK--PFKAADADVEALLLVGLYQLFYSR-IPAH 92 Query: 125 VIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEI 159 I E V A +NAVL R E Sbjct: 93 AAIGETVGCAEKLKKTWAKGLLNAVLRNAQRDGEA 127 >gi|54310619|ref|YP_131639.1| putative Sun protein [Photobacterium profundum SS9] gi|46915062|emb|CAG21837.1| Putative Sun protein [Photobacterium profundum SS9] Length = 431 Score = 39.3 bits (91), Expect = 0.20, Method: Composition-based stats. Identities = 26/139 (18%), Positives = 49/139 (35%), Gaps = 16/139 (11%) Query: 20 RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79 R AA Q ++Q+ G S + + + D + I +GV+ Sbjct: 4 RAAAAQVVFQVVDQGQSLSAAL-------------PAAQQNIRERDHALLQEICYGVLRW 50 Query: 80 KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139 + I++ L +K ++ G+ +L +P ++E V D Sbjct: 51 LPRL-ESITTHLMDK-PLKGKQRAFHHLILVGLYQLGHMR-IPAHAAVAETVNATKDLKK 107 Query: 140 GDEPKFINAVLDKVSRKEE 158 INA+L R++E Sbjct: 108 TQLRGLINAILRNYQRQQE 126 >gi|260599608|ref|YP_003212179.1| 16S rRNA methyltransferase B [Cronobacter turicensis z3032] gi|260218785|emb|CBA34133.1| Ribosomal RNA small subunit methyltransferase B [Cronobacter turicensis z3032] Length = 425 Score = 39.3 bits (91), Expect = 0.20, Method: Composition-based stats. Identities = 24/142 (16%), Positives = 51/142 (35%), Gaps = 22/142 (15%) Query: 20 RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79 R A QA+ Q+ G S + ++ ++ D + + GV+ Sbjct: 4 RSLAAQAIEQVVEKGQSLSTVL-------------PPLQHKVSDKDKALLQELCFGVLRT 50 Query: 80 KQHIDLLISSCLTEKWSFSRLDMILCSI---LRAGVLELIECHSVPVEVIISEYVCIAHD 136 + LI+ ++ + +I + G+ +L+ +P ++E V A Sbjct: 51 LSQQEWLINKLMSRP-----MTGKQRTIHYLIMVGLYQLLYTR-IPPHAALAETVEGAVA 104 Query: 137 FFYGDEPKFINAVLDKVSRKEE 158 IN VL + R+++ Sbjct: 105 IKRMQFKGLINGVLRQFQRQQD 126 >gi|238758791|ref|ZP_04619965.1| Ribosomal RNA small subunit methyltransferase B [Yersinia aldovae ATCC 35236] gi|238703088|gb|EEP95631.1| Ribosomal RNA small subunit methyltransferase B [Yersinia aldovae ATCC 35236] Length = 429 Score = 39.3 bits (91), Expect = 0.20, Method: Composition-based stats. Identities = 23/138 (16%), Positives = 47/138 (34%), Gaps = 16/138 (11%) Query: 20 RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79 R A +A+ Q+ G S + ++ E + D + + G + Sbjct: 8 RSIAAKAISQVLDQGQSLSTVLPEL-------------QKNISDKDRALLQELCFGALRV 54 Query: 80 KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139 ++ I + + I ++ G+ +LI +P ++E V A Sbjct: 55 LPQLEWCIQQLMAR--PLTGKQRIFHYLIMVGLYQLIYTR-IPPHAALAETVEGATALKR 111 Query: 140 GDEPKFINAVLDKVSRKE 157 IN VL + R++ Sbjct: 112 PQLKGLINGVLRQFQRQQ 129 >gi|251788002|ref|YP_003002723.1| 16S rRNA methyltransferase B [Dickeya zeae Ech1591] gi|247536623|gb|ACT05244.1| sun protein [Dickeya zeae Ech1591] Length = 431 Score = 39.3 bits (91), Expect = 0.20, Method: Composition-based stats. Identities = 18/96 (18%), Positives = 34/96 (35%), Gaps = 3/96 (3%) Query: 58 ESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIE 117 + D + I GV+ +D + + + + +L +L G+ +LI Sbjct: 33 QRDISEKDRGLLQEICFGVLRVLPQLDWYLRQLMAK--PLTGKQKVLHYLLMVGIYQLIH 90 Query: 118 CHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKV 153 +P ++E V A IN VL + Sbjct: 91 TR-IPPHAALAETVNAAVTLKRPQLKGLINGVLRQF 125 >gi|260775013|ref|ZP_05883913.1| ribosomal RNA small subunit methyltransferase B [Vibrio coralliilyticus ATCC BAA-450] gi|260609103|gb|EEX35262.1| ribosomal RNA small subunit methyltransferase B [Vibrio coralliilyticus ATCC BAA-450] Length = 426 Score = 39.3 bits (91), Expect = 0.20, Method: Composition-based stats. Identities = 22/139 (15%), Positives = 44/139 (31%), Gaps = 16/139 (11%) Query: 20 RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79 R AA L+Q+ G S + + + D + I +G + Sbjct: 4 RAAAANVLFQVVDKGQSLSNAL-------------PAAQQQVKPRDQALLQEICYGSLRY 50 Query: 80 KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139 ++ + + + + + ++ G+ +L +P + E V Sbjct: 51 LPRLESIANELMDK--PLKGKQRVFHHLILVGIYQLSFMR-IPAHAAVGETVEGTKTLKG 107 Query: 140 GDEPKFINAVLDKVSRKEE 158 INAVL R +E Sbjct: 108 PRLRGLINAVLRNYQRNQE 126 >gi|237801648|ref|ZP_04590109.1| 16S rRNA methyltransferase B [Pseudomonas syringae pv. oryzae str. 1_6] gi|331024507|gb|EGI04563.1| 16S rRNA methyltransferase B [Pseudomonas syringae pv. oryzae str. 1_6] Length = 441 Score = 39.3 bits (91), Expect = 0.20, Method: Composition-based stats. Identities = 20/95 (21%), Positives = 33/95 (34%), Gaps = 3/95 (3%) Query: 65 DLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVE 124 D + + G + + L + L + F D + ++L G+ +L +P Sbjct: 36 DRGLTQDLAFGTARWQPRLSALAAKLLQK--PFKAADADVEALLLVGLYQLFYSR-IPPH 92 Query: 125 VIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEI 159 I E V A +NAVL R E Sbjct: 93 AAIGETVGCADKLKKPWAKGLLNAVLRNAQRDGEA 127 >gi|254515962|ref|ZP_05128022.1| ribosomal RNA small subunit methyltransferase B [gamma proteobacterium NOR5-3] gi|219675684|gb|EED32050.1| ribosomal RNA small subunit methyltransferase B [gamma proteobacterium NOR5-3] Length = 433 Score = 39.3 bits (91), Expect = 0.20, Method: Composition-based stats. Identities = 25/123 (20%), Positives = 43/123 (34%), Gaps = 3/123 (2%) Query: 37 TTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWS 96 II+E ++ D R I G + + +D L+ L + Sbjct: 11 AARIIAEVLRGDSLDRALESHLTILPGRDQPLCREICFGTLRQYPRLDALLGQLLQK--P 68 Query: 97 FSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRK 156 D + ++ AG+ +L +P +S V A +NAVL + R+ Sbjct: 69 LRAKDRDVHALALAGLYQLTSMR-IPAHAAVSATVDAATVLKKRQLSGLLNAVLRRFQRE 127 Query: 157 EEI 159 EE Sbjct: 128 EEA 130 >gi|194367355|ref|YP_002029965.1| sun protein [Stenotrophomonas maltophilia R551-3] gi|194350159|gb|ACF53282.1| sun protein [Stenotrophomonas maltophilia R551-3] Length = 443 Score = 38.9 bits (90), Expect = 0.21, Method: Composition-based stats. Identities = 18/100 (18%), Positives = 37/100 (37%), Gaps = 3/100 (3%) Query: 65 DLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVE 124 D + V+ R+ D + + + S D L ++L G +L + +P Sbjct: 52 DRALLEALCFAVLRRRSTYDAALQGWMQK--PLSARDADLRTLLMVGFAQL-DVLELPAH 108 Query: 125 VIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRSGC 164 +S V A + +NA+L + R+ ++ Sbjct: 109 AALSATVDAARALGRERQAGLVNAILRRAQREGFPEQPAR 148 >gi|330898595|gb|EGH30014.1| 16S rRNA methyltransferase B [Pseudomonas syringae pv. japonica str. M301072PT] Length = 226 Score = 38.9 bits (90), Expect = 0.21, Method: Composition-based stats. Identities = 21/95 (22%), Positives = 34/95 (35%), Gaps = 3/95 (3%) Query: 65 DLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVE 124 D + + G + + L + L + F D + ++L G+ +L +P Sbjct: 23 DRGLTQDLAFGTARWQPRLSGLAAKLLQK--PFKAADADVEALLLVGLYQLFYSR-IPAH 79 Query: 125 VIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEI 159 I E V A +NAVL V R E Sbjct: 80 AAIGETVGCADKLKKPWAKGLLNAVLRNVQRDGEA 114 >gi|330861820|emb|CBX71992.1| ribosomal RNA small subunit methyltransferase B [Yersinia enterocolitica W22703] Length = 292 Score = 38.9 bits (90), Expect = 0.22, Method: Composition-based stats. Identities = 21/138 (15%), Positives = 48/138 (34%), Gaps = 16/138 (11%) Query: 20 RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79 R A +A+ Q+ G S + ++ ++ D + + G + Sbjct: 8 RSIAAKAISQVLDQGQSLSTVL-------------PGLQKSISDKDRALLQELCFGTLRV 54 Query: 80 KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139 ++ I + + + + ++ G+ +LI +P ++E V A Sbjct: 55 LPQLEWCIQQLMARPMTGKQ--RVFHYLIMVGLYQLIYTR-IPPHAALAETVEGATALKR 111 Query: 140 GDEPKFINAVLDKVSRKE 157 IN VL + R++ Sbjct: 112 PQLKGLINGVLRQFQRQQ 129 >gi|255261461|ref|ZP_05340803.1| rRNA methyltransferase RsmB [Thalassiobium sp. R2A62] gi|255103796|gb|EET46470.1| rRNA methyltransferase RsmB [Thalassiobium sp. R2A62] Length = 425 Score = 38.9 bits (90), Expect = 0.22, Method: Composition-based stats. Identities = 27/143 (18%), Positives = 49/143 (34%), Gaps = 21/143 (14%) Query: 20 RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHV-DLEWFRVIIHGVMD 78 R AAV L +II E R ++ +L D + + + Sbjct: 9 RRAAVHLL----------DQIIDE---GRLMSELIGGGALKHLDAGDTARAQRLTVETLR 55 Query: 79 RKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCI-AHDF 137 D ++ L K + ++LR G +E+ + V+ + V I + Sbjct: 56 GLDRADRMLKPFLKRKP-----GGTVMNVLRLGTVEICAEGAAAHGVV-NSAVEIVSKSQ 109 Query: 138 FYGDEPKFINAVLDKVSRKEEIK 160 +NAVL +V+ + K Sbjct: 110 RTSAMKGLVNAVLRRVAEQGSEK 132 >gi|114330411|ref|YP_746633.1| sun protein [Nitrosomonas eutropha C91] gi|114307425|gb|ABI58668.1| sun protein [Nitrosomonas eutropha C91] Length = 426 Score = 38.9 bits (90), Expect = 0.23, Method: Composition-based stats. Identities = 23/137 (16%), Positives = 44/137 (32%), Gaps = 17/137 (12%) Query: 21 LAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRK 80 L A+QA+ ++ G + E++ + + I +G + Sbjct: 6 LLAIQAIGEV-FAGANLNEVLRNIWQINSRLTPQQRGA----------IQDIAYGTLRHY 54 Query: 81 QHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFF-Y 139 +D ++ L + D L +L + +L P I+ V + Sbjct: 55 GQLDAILHQLLNKPAQ----DKSLHYLLAIALYQLCYSK-APAHAIVDHAVSSSRKITRN 109 Query: 140 GDEPKFINAVLDKVSRK 156 INAVL R+ Sbjct: 110 PAASGLINAVLRNFMRQ 126 >gi|171914122|ref|ZP_02929592.1| hypothetical protein VspiD_23125 [Verrucomicrobium spinosum DSM 4136] Length = 2202 Score = 38.9 bits (90), Expect = 0.24, Method: Composition-based stats. Identities = 15/77 (19%), Positives = 29/77 (37%), Gaps = 23/77 (29%) Query: 62 LHVDLEWFRVIIHGVMDRKQH--------IDLLISSCLTEKWSFSRLDMILCSIL----- 108 D +F ++ + K+ +D + L E W +SRL+++ ++L Sbjct: 1241 AKKDPAFFTKVVKPYLANKKDKTFMDEFLLDARLDRYL-EPWRYSRLNVVERALLAQRLP 1299 Query: 109 ----RAG-----VLELI 116 RA EL+ Sbjct: 1300 GEAARAARHLRESWELL 1316 >gi|330507424|ref|YP_004383852.1| hypothetical protein MCON_1351 [Methanosaeta concilii GP-6] gi|328928232|gb|AEB68034.1| conserved hypothetical protein [Methanosaeta concilii GP-6] Length = 436 Score = 38.9 bits (90), Expect = 0.24, Method: Composition-based stats. Identities = 29/131 (22%), Positives = 48/131 (36%), Gaps = 25/131 (19%) Query: 40 IISEYETYRFCADTELDVESVYLHVDLEWFRVIIH--------GVMDRKQHIDLLISSCL 91 I Y A + E V +D F ++ G+++ + D LI+ C Sbjct: 97 IFDRYPFESSMAAERVSGEEVLKLLDYPAFFDLLKLPLPESRAGILEALAN-DSLIAPCE 155 Query: 92 TEKWSFSRLDMILCSILRAGVLELIECHSVPVEVI----------ISEYVCIAHDFFYGD 141 W + L IL + R ++ P+ VI I EYV + + G Sbjct: 156 ASGWDITNLGAILLA-KRIDSFTALKRK--PIRVIQYRGNNRIETIKEYV-LVKGYASGF 211 Query: 142 EP--KFINAVL 150 E ++IN +L Sbjct: 212 EGLIEYINGLL 222 >gi|149912797|ref|ZP_01901331.1| ribosomal RNA small subunit methyltransferase B, putative [Roseobacter sp. AzwK-3b] gi|149813203|gb|EDM73029.1| ribosomal RNA small subunit methyltransferase B, putative [Roseobacter sp. AzwK-3b] Length = 427 Score = 38.9 bits (90), Expect = 0.25, Method: Composition-based stats. Identities = 27/139 (19%), Positives = 49/139 (35%), Gaps = 24/139 (17%) Query: 19 ARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMD 78 AR +AV L Q+ G +++IS R D + + + Sbjct: 8 ARRSAVHLLDQVLGEGRLMSDLISSGALDRL------------DPADRARAQRLATDTLR 55 Query: 79 RKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA---H 135 + D L+ L + + +ILR G +EL ++++ V + Sbjct: 56 GIERADRLLKRHLRKPPPLH-----VFNILRLGTVELCMGGDAHG--VVNDLVALVGSHR 108 Query: 136 DFFYGDEPKFINAVLDKVS 154 + INAVL K++ Sbjct: 109 RYGNLK--GLINAVLRKMA 125 >gi|332163229|ref|YP_004299806.1| 16S rRNA methyltransferase B [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|318607711|emb|CBY29209.1| ribosomal RNA small subunit methyltransferase B [Yersinia enterocolitica subsp. palearctica Y11] gi|325667459|gb|ADZ44103.1| 16S rRNA methyltransferase B [Yersinia enterocolitica subsp. palearctica 105.5R(r)] Length = 429 Score = 38.9 bits (90), Expect = 0.26, Method: Composition-based stats. Identities = 21/138 (15%), Positives = 48/138 (34%), Gaps = 16/138 (11%) Query: 20 RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79 R A +A+ Q+ G S + ++ ++ D + + G + Sbjct: 8 RSIAAKAISQVLDQGQSLSTVL-------------PGLQKSISDKDRALLQELCFGTLRV 54 Query: 80 KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139 ++ I + + + + ++ G+ +LI +P ++E V A Sbjct: 55 LPQLEWCIQQLMARPMTGKQ--RVFHYLIMVGLYQLIYTR-IPPHAALAETVEGATALKR 111 Query: 140 GDEPKFINAVLDKVSRKE 157 IN VL + R++ Sbjct: 112 PQLKGLINGVLRQFQRQQ 129 >gi|260774556|ref|ZP_05883469.1| ribosomal RNA small subunit methyltransferase B [Vibrio metschnikovii CIP 69.14] gi|260610462|gb|EEX35668.1| ribosomal RNA small subunit methyltransferase B [Vibrio metschnikovii CIP 69.14] Length = 426 Score = 38.9 bits (90), Expect = 0.27, Method: Composition-based stats. Identities = 24/140 (17%), Positives = 44/140 (31%), Gaps = 16/140 (11%) Query: 20 RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79 R AA L+Q+ G S + + + D + I +G + Sbjct: 4 RAAAANVLFQVVDKGHSLSHAL-------------PAAQKTIRPRDHALLQEICYGALRY 50 Query: 80 KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139 + I+ L + + ++ G+ +L +P ++E V Sbjct: 51 LPRL-ESIAGQLMDN-PLKGKKRVFHHLILVGLYQLSYMR-IPSHAAVAETVEATKTLRG 107 Query: 140 GDEPKFINAVLDKVSRKEEI 159 INAVL R +E Sbjct: 108 PSLSGLINAVLRSYLRDQEA 127 >gi|77413313|ref|ZP_00789508.1| sun protein [Streptococcus agalactiae 515] gi|77160627|gb|EAO71743.1| sun protein [Streptococcus agalactiae 515] Length = 426 Score = 38.5 bits (89), Expect = 0.27, Method: Composition-based stats. Identities = 23/113 (20%), Positives = 41/113 (36%), Gaps = 30/113 (26%) Query: 58 ESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLEL-- 115 +S D I++G + RK ++ +S + + L EL Sbjct: 23 KSRLSDKDRALVTEIVYGTVARKITLEWYLSHFI-----------VDRDKL-----ELWV 66 Query: 116 -----------IECHSVPVEVIISEYVCIAHDFFYGDEP-KFINAVLDKVSRK 156 + ++P I+++ V IA + K INAVL +VS + Sbjct: 67 YHLLLLSLYQLLYLDNIPDHAIVNDAVTIAKNRGNKKGAEKLINAVLRRVSSE 119 >gi|238752659|ref|ZP_04614130.1| Ribosomal RNA small subunit methyltransferase B [Yersinia rohdei ATCC 43380] gi|238709086|gb|EEQ01333.1| Ribosomal RNA small subunit methyltransferase B [Yersinia rohdei ATCC 43380] Length = 429 Score = 38.5 bits (89), Expect = 0.28, Method: Composition-based stats. Identities = 21/138 (15%), Positives = 47/138 (34%), Gaps = 16/138 (11%) Query: 20 RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79 R A +A+ Q+ G S + ++ + D + + G + Sbjct: 8 RSIAAKAISQVLDQGQSLSTVL-------------PGLNKSISDKDRALLQELCFGTLRV 54 Query: 80 KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139 ++ I + + + + ++ G+ +LI +P ++E V A Sbjct: 55 LPQLEWCIQQLMARPMTGKQ--RVFHYLIMVGLYQLIYTR-IPPHAALAETVEGATALKR 111 Query: 140 GDEPKFINAVLDKVSRKE 157 IN VL + R++ Sbjct: 112 PQLKGLINGVLRQFQRQQ 129 >gi|115488572|ref|NP_001066773.1| Os12g0481400 [Oryza sativa Japonica Group] gi|77555694|gb|ABA98490.1| NB-ARC domain containing protein [Oryza sativa Japonica Group] gi|113649280|dbj|BAF29792.1| Os12g0481400 [Oryza sativa Japonica Group] Length = 1504 Score = 38.5 bits (89), Expect = 0.28, Method: Composition-based stats. Identities = 18/80 (22%), Positives = 35/80 (43%), Gaps = 3/80 (3%) Query: 25 QALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHID 84 Q L Q+ + +++ E + +R + + E+V D E R ++ G+ +H Sbjct: 66 QLLSQLRDLAYDADDVLDELDYFRIQDELDGTYEAVD---DAEEERGLVRGLALHARHTA 122 Query: 85 LLISSCLTEKWSFSRLDMIL 104 I+ LT KW+ L + Sbjct: 123 RAIARKLTCKWNADALVPVD 142 >gi|77408116|ref|ZP_00784863.1| sun protein [Streptococcus agalactiae COH1] gi|77173300|gb|EAO76422.1| sun protein [Streptococcus agalactiae COH1] Length = 426 Score = 38.5 bits (89), Expect = 0.28, Method: Composition-based stats. Identities = 23/113 (20%), Positives = 41/113 (36%), Gaps = 30/113 (26%) Query: 58 ESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLEL-- 115 +S D I++G + RK ++ +S + + L EL Sbjct: 23 KSRLSDKDRALVTEIVYGTVARKITLEWYLSHFI-----------VDRDKL-----ELWV 66 Query: 116 -----------IECHSVPVEVIISEYVCIAHDFFYGDEP-KFINAVLDKVSRK 156 + ++P I+++ V IA + K INAVL +VS + Sbjct: 67 YHLLLLSLYQLLYLDNIPDHAIVNDAVTIAKNRGNKKGAEKLINAVLRRVSSE 119 >gi|123444066|ref|YP_001008036.1| 16S rRNA methyltransferase B [Yersinia enterocolitica subsp. enterocolitica 8081] gi|224493291|sp|A1JRZ3|RSMB_YERE8 RecName: Full=Ribosomal RNA small subunit methyltransferase B; AltName: Full=16S rRNA m5C967 methyltransferase; AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase rsmB gi|122091027|emb|CAL13910.1| conserved hypothetical protein [Yersinia enterocolitica subsp. enterocolitica 8081] Length = 429 Score = 38.5 bits (89), Expect = 0.28, Method: Composition-based stats. Identities = 21/138 (15%), Positives = 48/138 (34%), Gaps = 16/138 (11%) Query: 20 RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79 R A +A+ Q+ G S + ++ ++ D + + G + Sbjct: 8 RSIAAKAISQVLDQGQSLSTVL-------------PGLQKSISDKDRALLQELCFGTLRV 54 Query: 80 KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139 ++ I + + + + ++ G+ +LI +P ++E V A Sbjct: 55 LPQLEWCIQQLMARPMTGKQ--RVFHYLIMVGLYQLIYTR-IPPHAALAETVEGATALKR 111 Query: 140 GDEPKFINAVLDKVSRKE 157 IN VL + R++ Sbjct: 112 PQLKGLINGVLRQFQRQQ 129 >gi|76797821|ref|ZP_00780086.1| sun protein [Streptococcus agalactiae 18RS21] gi|76586835|gb|EAO63328.1| sun protein [Streptococcus agalactiae 18RS21] Length = 426 Score = 38.5 bits (89), Expect = 0.28, Method: Composition-based stats. Identities = 23/113 (20%), Positives = 41/113 (36%), Gaps = 30/113 (26%) Query: 58 ESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLEL-- 115 +S D I++G + RK ++ +S + + L EL Sbjct: 23 KSRLSDKDRALVTEIVYGTVARKITLEWYLSHFI-----------VDRDKL-----ELWV 66 Query: 116 -----------IECHSVPVEVIISEYVCIAHDFFYGDEP-KFINAVLDKVSRK 156 + ++P I+++ V IA + K INAVL +VS + Sbjct: 67 YHLLLLSLYQLLYLDNIPDHAIVNDAVTIAKNRGNKKGAEKLINAVLRRVSSE 119 >gi|302186426|ref|ZP_07263099.1| Fmu, rRNA SAM-dependent methyltransferase [Pseudomonas syringae pv. syringae 642] Length = 441 Score = 38.5 bits (89), Expect = 0.29, Method: Composition-based stats. Identities = 20/95 (21%), Positives = 33/95 (34%), Gaps = 3/95 (3%) Query: 65 DLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVE 124 D + + G + + L + L + F D + ++L G+ +L +P Sbjct: 36 DRGLTQDLAFGTARWQPRLSALAAKLLQK--PFKAADADVEALLLVGLYQLFYSR-IPAH 92 Query: 125 VIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEI 159 I E V A +NAVL R E Sbjct: 93 AAIGETVGCADKLKKPWAKGLLNAVLRNAQRDGEA 127 >gi|71898895|ref|ZP_00681062.1| Fmu, rRNA SAM-dependent methyltransferase [Xylella fastidiosa Ann-1] gi|71731307|gb|EAO33371.1| Fmu, rRNA SAM-dependent methyltransferase [Xylella fastidiosa Ann-1] Length = 429 Score = 38.5 bits (89), Expect = 0.29, Method: Composition-based stats. Identities = 21/92 (22%), Positives = 34/92 (36%), Gaps = 3/92 (3%) Query: 65 DLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVE 124 D I V+ R+ + ++ L R D L +L G +L + VP Sbjct: 41 DRALVEAICFAVLRRRPVYEAALTRWLAR--PLGRGDAQLRGLLMVGFAQL-DVLKVPPY 97 Query: 125 VIISEYVCIAHDFFYGDEPKFINAVLDKVSRK 156 +S V + F+NAVL + R+ Sbjct: 98 AALSATVDACRVLGWPHRASFVNAVLRRAQRE 129 >gi|313680062|ref|YP_004057801.1| nusb/rsmb/tim44 [Oceanithermus profundus DSM 14977] gi|313152777|gb|ADR36628.1| NusB/RsmB/TIM44 [Oceanithermus profundus DSM 14977] Length = 410 Score = 38.5 bits (89), Expect = 0.29, Method: Composition-based stats. Identities = 25/104 (24%), Positives = 43/104 (41%), Gaps = 17/104 (16%) Query: 53 TELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGV 112 TELD ++ L D +++G + R + ID + L RL + LRAG Sbjct: 35 TELDPQAAGLATD------LVYGTLRRLRWIDWSLEPLLEH---PGRLPEAVRWALRAGG 85 Query: 113 LELIECHSVPVEVIISEYVCIAHDFFYGDEPK---FINAVLDKV 153 E + P ++ +V + P+ +NAVL ++ Sbjct: 86 YEKLFTPR-PAHASVNAWVEVV----GRRHPRLRGLVNAVLRRL 124 >gi|261250606|ref|ZP_05943181.1| ribosomal RNA small subunit methyltransferase B [Vibrio orientalis CIP 102891] gi|260939175|gb|EEX95162.1| ribosomal RNA small subunit methyltransferase B [Vibrio orientalis CIP 102891] Length = 426 Score = 38.5 bits (89), Expect = 0.30, Method: Composition-based stats. Identities = 25/139 (17%), Positives = 45/139 (32%), Gaps = 16/139 (11%) Query: 20 RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79 R AA L+Q+ G S + + + D + I +G + Sbjct: 4 RAAAANVLFQVVDKGQSLSHAL-------------PAAQKTIRPRDHALLQEICYGALRY 50 Query: 80 KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139 + I++ L E + ++ G+ +L +P ++E V Sbjct: 51 LPRL-ESIANELMEN-PLKGKKRVFHHLILVGIYQLSFMR-IPAHAAVAETVEGTKTLKG 107 Query: 140 GDEPKFINAVLDKVSRKEE 158 INAVL R +E Sbjct: 108 PSLRGLINAVLRSYLRDQE 126 >gi|330965124|gb|EGH65384.1| 16S rRNA methyltransferase B [Pseudomonas syringae pv. actinidiae str. M302091] Length = 448 Score = 38.5 bits (89), Expect = 0.30, Method: Composition-based stats. Identities = 20/95 (21%), Positives = 33/95 (34%), Gaps = 3/95 (3%) Query: 65 DLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVE 124 D + + G + + L + L + F D + ++L G+ +L +P Sbjct: 36 DRGLTQDLAFGTARWQPRLSALAAKLLQK--PFKAADADVEALLLVGLYQLFYSR-IPAH 92 Query: 125 VIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEI 159 I E V A +NAVL R E Sbjct: 93 AAIGETVGCADKLKKPWAKGLLNAVLRNAQRDGEA 127 >gi|298484625|ref|ZP_07002729.1| Ribosomal RNA small subunit methyltransferase B [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|298160849|gb|EFI01866.1| Ribosomal RNA small subunit methyltransferase B [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] Length = 441 Score = 38.5 bits (89), Expect = 0.30, Method: Composition-based stats. Identities = 19/95 (20%), Positives = 33/95 (34%), Gaps = 3/95 (3%) Query: 65 DLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVE 124 D + + G + + + + L + F D + ++L G+ +L +P Sbjct: 36 DRGLTQDLAFGTARWQPRLSAMAAKLLQK--PFKAADADVEALLLVGLYQLFYSR-IPAH 92 Query: 125 VIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEI 159 I E V A +NAVL R E Sbjct: 93 AAIGETVGCAEKLKKPWAKGLLNAVLRNAQRDGEA 127 >gi|257485586|ref|ZP_05639627.1| sun protein [Pseudomonas syringae pv. tabaci ATCC 11528] gi|330985725|gb|EGH83828.1| 16S rRNA methyltransferase B [Pseudomonas syringae pv. lachrymans str. M301315] gi|331011875|gb|EGH91931.1| 16S rRNA methyltransferase B [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 448 Score = 38.5 bits (89), Expect = 0.30, Method: Composition-based stats. Identities = 20/95 (21%), Positives = 33/95 (34%), Gaps = 3/95 (3%) Query: 65 DLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVE 124 D + + G + + L + L + F D + ++L G+ +L +P Sbjct: 36 DRGLTQDLAFGTARWQPRLSALAAKLLQK--PFKAADADVEALLLVGLYQLFYSR-IPAH 92 Query: 125 VIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEI 159 I E V A +NAVL R E Sbjct: 93 AAIGETVGCADKLKKPWAKGLLNAVLRNAQRDGEA 127 >gi|331017689|gb|EGH97745.1| 16S rRNA methyltransferase B [Pseudomonas syringae pv. lachrymans str. M302278PT] Length = 448 Score = 38.5 bits (89), Expect = 0.30, Method: Composition-based stats. Identities = 20/95 (21%), Positives = 33/95 (34%), Gaps = 3/95 (3%) Query: 65 DLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVE 124 D + + G + + L + L + F D + ++L G+ +L +P Sbjct: 36 DRGLTQDLAFGTARWQPRLSALAAKLLQK--PFKAADADVEALLLVGLYQLFYSR-IPAH 92 Query: 125 VIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEI 159 I E V A +NAVL R E Sbjct: 93 AAIGETVGCADKLKKPWAKGLLNAVLRNAQRDGEA 127 >gi|125579342|gb|EAZ20488.1| hypothetical protein OsJ_36095 [Oryza sativa Japonica Group] Length = 2432 Score = 38.5 bits (89), Expect = 0.30, Method: Composition-based stats. Identities = 18/80 (22%), Positives = 35/80 (43%), Gaps = 3/80 (3%) Query: 25 QALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHID 84 Q L Q+ + +++ E + +R + + E+V D E R ++ G+ +H Sbjct: 66 QLLSQLRDLAYDADDVLDELDYFRIQDELDGTYEAVD---DAEEERGLVRGLALHARHTA 122 Query: 85 LLISSCLTEKWSFSRLDMIL 104 I+ LT KW+ L + Sbjct: 123 RAIARKLTCKWNADALVPVD 142 >gi|66043288|ref|YP_233129.1| Fmu, rRNA SAM-dependent methyltransferase [Pseudomonas syringae pv. syringae B728a] gi|63253995|gb|AAY35091.1| Fmu, rRNA SAM-dependent methyltransferase [Pseudomonas syringae pv. syringae B728a] Length = 448 Score = 38.5 bits (89), Expect = 0.31, Method: Composition-based stats. Identities = 20/95 (21%), Positives = 33/95 (34%), Gaps = 3/95 (3%) Query: 65 DLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVE 124 D + + G + + L + L + F D + ++L G+ +L +P Sbjct: 36 DRGLTQDLAFGTARWQPRLSALAAKLLQK--PFKAADADVEALLLVGLYQLFYSR-IPAH 92 Query: 125 VIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEI 159 I E V A +NAVL R E Sbjct: 93 AAIGETVGCADKLKKPWAKGLLNAVLRNAQRDGEA 127 >gi|302130426|ref|ZP_07256416.1| sun protein [Pseudomonas syringae pv. tomato NCPPB 1108] Length = 448 Score = 38.5 bits (89), Expect = 0.31, Method: Composition-based stats. Identities = 20/95 (21%), Positives = 33/95 (34%), Gaps = 3/95 (3%) Query: 65 DLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVE 124 D + + G + + L + L + F D + ++L G+ +L +P Sbjct: 36 DRGLTQDLAFGTARWQPRLSALAAKLLQK--PFKAADADVEALLLVGLYQLFYSR-IPAH 92 Query: 125 VIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEI 159 I E V A +NAVL R E Sbjct: 93 AAIGETVGCADKLKKPWAKGLLNAVLRNAQRDGEA 127 >gi|253690152|ref|YP_003019342.1| sun protein [Pectobacterium carotovorum subsp. carotovorum PC1] gi|259495486|sp|C6DFR7|RSMB_PECCP RecName: Full=Ribosomal RNA small subunit methyltransferase B; AltName: Full=16S rRNA m5C967 methyltransferase; AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase rsmB gi|251756730|gb|ACT14806.1| sun protein [Pectobacterium carotovorum subsp. carotovorum PC1] Length = 429 Score = 38.5 bits (89), Expect = 0.31, Method: Composition-based stats. Identities = 17/97 (17%), Positives = 35/97 (36%), Gaps = 3/97 (3%) Query: 62 LHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSV 121 D + + GV+ ++ I + + + L ++ G+ +L + Sbjct: 37 SEKDRALLQELCFGVLRVLPQLEWCIQQLMAK--PLTGKQRTLHYLIMVGIYQLHYTR-I 93 Query: 122 PVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEE 158 P ++E V A IN VL + R++E Sbjct: 94 PPHAALAETVEGAVALKRPQLKGLINGVLRQFQRQQE 130 >gi|213968427|ref|ZP_03396570.1| sun protein [Pseudomonas syringae pv. tomato T1] gi|301384285|ref|ZP_07232703.1| sun protein [Pseudomonas syringae pv. tomato Max13] gi|302060153|ref|ZP_07251694.1| sun protein [Pseudomonas syringae pv. tomato K40] gi|213926715|gb|EEB60267.1| sun protein [Pseudomonas syringae pv. tomato T1] Length = 448 Score = 38.5 bits (89), Expect = 0.31, Method: Composition-based stats. Identities = 20/95 (21%), Positives = 33/95 (34%), Gaps = 3/95 (3%) Query: 65 DLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVE 124 D + + G + + L + L + F D + ++L G+ +L +P Sbjct: 36 DRGLTQDLAFGTARWQPRLSALAAKLLQK--PFKAADADVEALLLVGLYQLFYSR-IPAH 92 Query: 125 VIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEI 159 I E V A +NAVL R E Sbjct: 93 AAIGETVGCADKLKKPWAKGLLNAVLRNAQRDGEA 127 >gi|28867419|ref|NP_790038.1| sun protein [Pseudomonas syringae pv. tomato str. DC3000] gi|46396868|sp|Q88B41|RSMB_PSESM RecName: Full=Ribosomal RNA small subunit methyltransferase B; AltName: Full=16S rRNA m5C967 methyltransferase; AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase rsmB gi|28850653|gb|AAO53733.1| sun protein [Pseudomonas syringae pv. tomato str. DC3000] Length = 448 Score = 38.5 bits (89), Expect = 0.31, Method: Composition-based stats. Identities = 20/95 (21%), Positives = 33/95 (34%), Gaps = 3/95 (3%) Query: 65 DLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVE 124 D + + G + + L + L + F D + ++L G+ +L +P Sbjct: 36 DRGLTQDLAFGTARWQPRLSALAAKLLQK--PFKAADADVEALLLVGLYQLFYSR-IPAH 92 Query: 125 VIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEI 159 I E V A +NAVL R E Sbjct: 93 AAIGETVGCADKLKKPWAKGLLNAVLRNAQRDGEA 127 >gi|330976420|gb|EGH76476.1| 16S rRNA methyltransferase B [Pseudomonas syringae pv. aptata str. DSM 50252] Length = 416 Score = 38.5 bits (89), Expect = 0.31, Method: Composition-based stats. Identities = 20/95 (21%), Positives = 33/95 (34%), Gaps = 3/95 (3%) Query: 65 DLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVE 124 D + + G + + L + L + F D + ++L G+ +L +P Sbjct: 36 DRGLTQDLAFGTARWQPRLSALAAKLLQK--PFKAADADVEALLLVGLYQLFYSR-IPAH 92 Query: 125 VIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEI 159 I E V A +NAVL R E Sbjct: 93 AAIGETVGCADKLKKPWAKGLLNAVLRNAQRDGEA 127 >gi|84500523|ref|ZP_00998772.1| ribosomal RNA small subunit methyltransferase B, putative [Oceanicola batsensis HTCC2597] gi|84391476|gb|EAQ03808.1| ribosomal RNA small subunit methyltransferase B, putative [Oceanicola batsensis HTCC2597] Length = 465 Score = 38.5 bits (89), Expect = 0.31, Method: Composition-based stats. Identities = 17/97 (17%), Positives = 31/97 (31%), Gaps = 8/97 (8%) Query: 59 SVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIEC 118 + D + + + +D L++ L+ + LR EL Sbjct: 75 GRFDPADRARAQRLATETLRHLGRLDTLLAEHLSHMPPL----PV-LITLRIATYEL-AT 128 Query: 119 HSVPVEVIISEYVC-IAHDFFYGDEPKFINAVLDKVS 154 V+ + V +A + NAVL KV+ Sbjct: 129 SEAAHGVV-NSAVTHVAAMPRHNRLKGMTNAVLRKVA 164 >gi|50122921|ref|YP_052088.1| 16S rRNA methyltransferase B [Pectobacterium atrosepticum SCRI1043] gi|81643776|sp|Q6D000|RSMB_ERWCT RecName: Full=Ribosomal RNA small subunit methyltransferase B; AltName: Full=16S rRNA m5C967 methyltransferase; AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase rsmB gi|49613447|emb|CAG76898.1| Sun protein [Pectobacterium atrosepticum SCRI1043] Length = 429 Score = 38.5 bits (89), Expect = 0.31, Method: Composition-based stats. Identities = 17/97 (17%), Positives = 35/97 (36%), Gaps = 3/97 (3%) Query: 62 LHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSV 121 D + + GV+ ++ I + + + L ++ G+ +L + Sbjct: 37 SDKDRALLQELCFGVLRVLPQLEWCIQQLMAK--PLTGKQRTLHYLIMVGIYQLHYTR-I 93 Query: 122 PVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEE 158 P ++E V A IN VL + R++E Sbjct: 94 PPHAALAETVEGAVALKRPQLKGLINGVLRQFQRQQE 130 >gi|292489815|ref|YP_003532705.1| ribosomal RNA small subunit methyltransferase B [Erwinia amylovora CFBP1430] gi|291555252|emb|CBA23523.1| Ribosomal RNA small subunit methyltransferase B [Erwinia amylovora CFBP1430] Length = 456 Score = 38.5 bits (89), Expect = 0.32, Method: Composition-based stats. Identities = 17/122 (13%), Positives = 45/122 (36%), Gaps = 12/122 (9%) Query: 32 IIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCL 91 I + +++ + ++ ++ + D + + +GV+ ++ +IS + Sbjct: 37 IAARTIEQVVEQGQS---LSNVLPAAQKCVDDKDAALVQELCYGVLRTLPQLEWVISKLM 93 Query: 92 TEKWSFSRLDMILCSI---LRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINA 148 + + +I + G+ +L+ +P ++E V A IN Sbjct: 94 SRP-----MTGKQRAIHFLIMVGLYQLMFTR-IPPHAALAETVEGAVALKRPQLKGLING 147 Query: 149 VL 150 VL Sbjct: 148 VL 149 >gi|254429168|ref|ZP_05042875.1| ribosomal RNA small subunit methyltransferase B [Alcanivorax sp. DG881] gi|196195337|gb|EDX90296.1| ribosomal RNA small subunit methyltransferase B [Alcanivorax sp. DG881] Length = 427 Score = 38.5 bits (89), Expect = 0.32, Method: Composition-based stats. Identities = 21/102 (20%), Positives = 36/102 (35%), Gaps = 3/102 (2%) Query: 54 ELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVL 113 E+ + D R I GV + ++ ++ L++ + L AG+ Sbjct: 19 EVLRDFPLQGSDGGQMRDICFGVCRHLRPLNHWLNQQLSK--PLKASAQPVRLALLAGLY 76 Query: 114 ELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSR 155 EL P I++ Y + NAVL K S+ Sbjct: 77 EL-WFSDRPAHAIVNAYPQLCRKLKAPWAAGLSNAVLRKASQ 117 >gi|291619144|ref|YP_003521886.1| RsmB [Pantoea ananatis LMG 20103] gi|291154174|gb|ADD78758.1| RsmB [Pantoea ananatis LMG 20103] Length = 433 Score = 38.5 bits (89), Expect = 0.32, Method: Composition-based stats. Identities = 20/103 (19%), Positives = 38/103 (36%), Gaps = 3/103 (2%) Query: 57 VESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELI 116 + D + I GV+ ++ LI + + L ++ G+ +L+ Sbjct: 32 AQKKLSDKDAALVQEICFGVLRTLPQLEALIGKLMER--PLTGKQRTLHFLIMVGLYQLL 89 Query: 117 ECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEI 159 VP ++E V A + IN VL + R++E Sbjct: 90 YTR-VPAHAALAETVAGAEVLKRANLKGLINGVLRQFQRQQEA 131 >gi|238783195|ref|ZP_04627221.1| Ribosomal RNA small subunit methyltransferase B [Yersinia bercovieri ATCC 43970] gi|238715991|gb|EEQ07977.1| Ribosomal RNA small subunit methyltransferase B [Yersinia bercovieri ATCC 43970] Length = 431 Score = 38.5 bits (89), Expect = 0.32, Method: Composition-based stats. Identities = 21/138 (15%), Positives = 48/138 (34%), Gaps = 16/138 (11%) Query: 20 RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79 R A +A+ Q+ G S + ++ + + D + + G + Sbjct: 8 RSIAAKAISQVLDQGQSLSTVL-------------PGLHNTISDKDRALLQELCFGTLRV 54 Query: 80 KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139 ++ I + + + + ++ G+ +LI +P ++E V A Sbjct: 55 LPQLEWCIQQLMARPMTGKQ--RVFHYLIMVGLYQLIYTR-IPPHAALAETVEGATALKR 111 Query: 140 GDEPKFINAVLDKVSRKE 157 IN VL + R++ Sbjct: 112 PQLKGLINGVLRQFQRQQ 129 >gi|238921411|ref|YP_002934926.1| 16S rRNA methyltransferase B [Edwardsiella ictaluri 93-146] gi|238870980|gb|ACR70691.1| ribosomal RNA small subunit methyltransferase B, putative [Edwardsiella ictaluri 93-146] Length = 430 Score = 38.5 bits (89), Expect = 0.33, Method: Composition-based stats. Identities = 16/105 (15%), Positives = 37/105 (35%), Gaps = 3/105 (2%) Query: 55 LDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLE 114 D + + G + ++ ++ + + + + L +L G+ + Sbjct: 31 PSAAQSLSEKDRALLQELCFGTLRVLPQLEWILQQLMAKVLTGKQ--RTLHYLLMVGLYQ 88 Query: 115 LIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEI 159 L+ +P ++E V A IN VL + R++E Sbjct: 89 LVYTR-IPPHAALAETVDGATALKRPQLKGLINGVLRQFQRQQEA 132 >gi|15837530|ref|NP_298218.1| hypothetical protein XF0928 [Xylella fastidiosa 9a5c] gi|46397049|sp|Q9PEV0|RSMB_XYLFA RecName: Full=Ribosomal RNA small subunit methyltransferase B; AltName: Full=16S rRNA m5C967 methyltransferase; AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase rsmB gi|9105851|gb|AAF83738.1|AE003932_2 conserved hypothetical protein [Xylella fastidiosa 9a5c] Length = 421 Score = 38.5 bits (89), Expect = 0.33, Method: Composition-based stats. Identities = 21/92 (22%), Positives = 34/92 (36%), Gaps = 3/92 (3%) Query: 65 DLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVE 124 D I V+ R+ + ++ L R D L +L G +L + VP Sbjct: 33 DRALVEAICFAVLRRRPVYEAALTQWLAR--PLGRGDAQLRGLLMVGFAQL-DVLKVPPY 89 Query: 125 VIISEYVCIAHDFFYGDEPKFINAVLDKVSRK 156 +S V + F+NAVL + R+ Sbjct: 90 AALSATVDACRVLGWPHRASFVNAVLRRAQRE 121 >gi|126668178|ref|ZP_01739139.1| Fmu, rRNA SAM-dependent methyltransferase [Marinobacter sp. ELB17] gi|126627327|gb|EAZ97963.1| Fmu, rRNA SAM-dependent methyltransferase [Marinobacter sp. ELB17] Length = 432 Score = 38.5 bits (89), Expect = 0.34, Method: Composition-based stats. Identities = 11/88 (12%), Positives = 28/88 (31%), Gaps = 3/88 (3%) Query: 69 FRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIIS 128 + + +G +D + + + D ++ ++ + +L V ++ Sbjct: 43 LQALCYGTCRWFHRLDDELQGRMKK--PLKNHDRVVHHLMLVALFQLRFSQQATYAV-LN 99 Query: 129 EYVCIAHDFFYGDEPKFINAVLDKVSRK 156 E V +N VL R+ Sbjct: 100 ETVEACRAMDKPHLTGLVNGVLRSAERE 127 >gi|330876378|gb|EGH10527.1| 16S rRNA methyltransferase B [Pseudomonas syringae pv. morsprunorum str. M302280PT] Length = 448 Score = 38.5 bits (89), Expect = 0.34, Method: Composition-based stats. Identities = 20/95 (21%), Positives = 33/95 (34%), Gaps = 3/95 (3%) Query: 65 DLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVE 124 D + + G + + L + L + F D + ++L G+ +L +P Sbjct: 36 DRGLTQDLAFGTARWQPRLSALAAKLLQK--PFKAADADVEALLLVGLYQLFYSR-IPAH 92 Query: 125 VIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEI 159 I E V A +NAVL R E Sbjct: 93 AAIGETVGCADKLKKPWAKGLLNAVLRNAQRDGEA 127 >gi|327395473|dbj|BAK12895.1| ribosomal RNA small subunit methyltransferase B RsmB [Pantoea ananatis AJ13355] Length = 433 Score = 38.5 bits (89), Expect = 0.34, Method: Composition-based stats. Identities = 20/103 (19%), Positives = 38/103 (36%), Gaps = 3/103 (2%) Query: 57 VESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELI 116 + D + I GV+ ++ LI + + L ++ G+ +L+ Sbjct: 32 AQKKLSDKDAALVQEICFGVLRTLPQLEALIGKLMER--PLTGKQRTLHFLIMVGLYQLL 89 Query: 117 ECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEI 159 VP ++E V A + IN VL + R++E Sbjct: 90 YTR-VPAHAALAETVAGAEVLKRANLKGLINGVLRQFQRQQEA 131 >gi|85711007|ref|ZP_01042068.1| tRNA and rRNA methylase [Idiomarina baltica OS145] gi|85695411|gb|EAQ33348.1| tRNA and rRNA methylase [Idiomarina baltica OS145] Length = 437 Score = 38.5 bits (89), Expect = 0.35, Method: Composition-based stats. Identities = 27/144 (18%), Positives = 49/144 (34%), Gaps = 16/144 (11%) Query: 19 ARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMD 78 +R A QA++ + G S T+ ++ Y D + I +GVM Sbjct: 11 SRAVAAQAIHAVLEQGQSLTQALTTY-------------SEQLSAEDKRLAQAISYGVMR 57 Query: 79 RKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFF 138 + +S L + + I+ S+L G +L +S V + Sbjct: 58 YLPVLTEKVSGKLDK--PLKGKNQIIQSLLLVGTYQL-FKLRTKDHAAVSATVEASKLLK 114 Query: 139 YGDEPKFINAVLDKVSRKEEIKRS 162 +N VL +V R+ + Sbjct: 115 RKALSGLVNGVLRQVLREAPTRND 138 >gi|292900857|ref|YP_003540226.1| ribosomal RNA small subunit methyltransferase B [Erwinia amylovora ATCC 49946] gi|291200705|emb|CBJ47838.1| ribosomal RNA small subunit methyltransferase B [Erwinia amylovora ATCC 49946] Length = 429 Score = 38.2 bits (88), Expect = 0.37, Method: Composition-based stats. Identities = 17/122 (13%), Positives = 45/122 (36%), Gaps = 12/122 (9%) Query: 32 IIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCL 91 I + +++ + ++ ++ + D + + +GV+ ++ +IS + Sbjct: 10 IAARTIEQVVEQGQS---LSNVLPAAQKCVDDKDAALVQELCYGVLRTLPQLEWVISKLM 66 Query: 92 TEKWSFSRLDMILCSI---LRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINA 148 + + +I + G+ +L+ +P ++E V A IN Sbjct: 67 SRP-----MTGKQRAIHFLIMVGLYQLMFTR-IPPHAALAETVEGAVALKRPQLKGLING 120 Query: 149 VL 150 VL Sbjct: 121 VL 122 >gi|330957387|gb|EGH57647.1| 16S rRNA methyltransferase B [Pseudomonas syringae pv. maculicola str. ES4326] Length = 441 Score = 38.2 bits (88), Expect = 0.37, Method: Composition-based stats. Identities = 20/95 (21%), Positives = 33/95 (34%), Gaps = 3/95 (3%) Query: 65 DLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVE 124 D + + G + + L + L + F D + ++L G+ +L +P Sbjct: 36 DRGLTQDLAFGTARWQPRLSALAAKLLQK--PFKAADADVEALLLVGLYQLFYSR-IPAH 92 Query: 125 VIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEI 159 I E V A +NAVL R E Sbjct: 93 AAIGETVGCADKLKKPWAKGLLNAVLRNAQRDGEA 127 >gi|261823202|ref|YP_003261308.1| 16S rRNA methyltransferase B [Pectobacterium wasabiae WPP163] gi|261607215|gb|ACX89701.1| sun protein [Pectobacterium wasabiae WPP163] Length = 429 Score = 38.2 bits (88), Expect = 0.37, Method: Composition-based stats. Identities = 17/97 (17%), Positives = 35/97 (36%), Gaps = 3/97 (3%) Query: 62 LHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSV 121 D + + GV+ ++ I + + + L ++ G+ +L + Sbjct: 37 SDKDRALLQELCFGVLRVLPQLEWCIQQLMAK--PLTGKQRTLHYLIMVGIYQLHYTR-I 93 Query: 122 PVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEE 158 P ++E V A IN VL + R++E Sbjct: 94 PPHAALAETVEGAVALKRPQLKGLINGVLRQFQRQQE 130 >gi|195382294|ref|XP_002049865.1| GJ21825 [Drosophila virilis] gi|194144662|gb|EDW61058.1| GJ21825 [Drosophila virilis] Length = 915 Score = 38.2 bits (88), Expect = 0.37, Method: Composition-based stats. Identities = 15/82 (18%), Positives = 34/82 (41%), Gaps = 4/82 (4%) Query: 5 DNKKDLKLSHRRGIARLAA--VQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYL 62 D K + +R + A +QA++QI + G ++ E ++++ Sbjct: 363 PKHPDYKYNAKRSVYSELAAPLQAVFQIPLTGAEIFAVLKELRGRYRRELSKVNSLGGKY 422 Query: 63 HVDLEWFRVI--IHGVMDRKQH 82 L +F + + GV++ K+ Sbjct: 423 KSRLWYFEKMHFLRGVIEHKRA 444 >gi|254507306|ref|ZP_05119442.1| ribosomal RNA small subunit methyltransferase B [Vibrio parahaemolyticus 16] gi|219549766|gb|EED26755.1| ribosomal RNA small subunit methyltransferase B [Vibrio parahaemolyticus 16] Length = 426 Score = 38.2 bits (88), Expect = 0.38, Method: Composition-based stats. Identities = 24/140 (17%), Positives = 45/140 (32%), Gaps = 16/140 (11%) Query: 20 RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79 R AA L+Q+ G S + + + D + I +G + Sbjct: 4 RAAAANVLFQVVDKGQSLSHAL-------------PAAQKTIRPRDHALLQEICYGALRY 50 Query: 80 KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139 + I++ L + + ++ G+ +L +P ++E V Sbjct: 51 LPRL-ESIANELMDN-PLKGKKRVFHHLILVGIYQLSFMR-IPAHAAVAETVEGTKTLKG 107 Query: 140 GDEPKFINAVLDKVSRKEEI 159 INAVL R +E Sbjct: 108 PSLRGLINAVLRSYLRDQEA 127 >gi|329117416|ref|ZP_08246133.1| ribosomal RNA small subunit methyltransferase B [Streptococcus parauberis NCFD 2020] gi|326907821|gb|EGE54735.1| ribosomal RNA small subunit methyltransferase B [Streptococcus parauberis NCFD 2020] Length = 440 Score = 38.2 bits (88), Expect = 0.40, Method: Composition-based stats. Identities = 26/136 (19%), Positives = 55/136 (40%), Gaps = 15/136 (11%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 + +AR A+ L E I E + Y A D I++G Sbjct: 6 KKLARGKALIVL-----------EDIFENDAYSNLALNNQLTNIALSSKDKGLITEIVYG 54 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135 + RK ++ ++ + ++ +++ + +L + +L+ VP I+++ V IA Sbjct: 55 TLSRKMTLEWYLAHFIEDR---DKIEKWVYYLLLLSLYQLLYLDKVPAHAIVNDAVNIAK 111 Query: 136 DFFYGDEP-KFINAVL 150 + K++NA+L Sbjct: 112 NRGNKRGAEKYVNAIL 127 >gi|289627007|ref|ZP_06459961.1| sun protein [Pseudomonas syringae pv. aesculi str. NCPPB3681] gi|289647928|ref|ZP_06479271.1| sun protein [Pseudomonas syringae pv. aesculi str. 2250] gi|330867899|gb|EGH02608.1| 16S rRNA methyltransferase B [Pseudomonas syringae pv. aesculi str. 0893_23] Length = 441 Score = 38.2 bits (88), Expect = 0.40, Method: Composition-based stats. Identities = 20/95 (21%), Positives = 33/95 (34%), Gaps = 3/95 (3%) Query: 65 DLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVE 124 D + + G + + L + L + F D + ++L G+ +L +P Sbjct: 36 DRGLTQDLAFGTARWQPRLSALAAKLLQK--PFKAADADVEALLLVGLYQLFYSR-IPAH 92 Query: 125 VIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEI 159 I E V A +NAVL R E Sbjct: 93 AAIGETVGCADKLKKPWAKGLLNAVLRNAQRDGEA 127 >gi|290477163|ref|YP_003470078.1| 16S rRNA m5C967 methyltransferase, S-adenosyl-L-methionine-dependent [Xenorhabdus bovienii SS-2004] gi|289176511|emb|CBJ83320.1| 16S rRNA m5C967 methyltransferase, S-adenosyl-L-methionine-dependent [Xenorhabdus bovienii SS-2004] Length = 428 Score = 38.2 bits (88), Expect = 0.40, Method: Composition-based stats. Identities = 24/139 (17%), Positives = 49/139 (35%), Gaps = 16/139 (11%) Query: 20 RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79 R A +A++Q+ G S + +I E + D + + GV+ Sbjct: 8 RNIAAKAIHQVLEQGQSLSTVIPEL-------------QQRVSDKDKALLQELCFGVIRV 54 Query: 80 KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139 ++ I + + I ++ G+ +L +P ++E V A Sbjct: 55 LPQLEWFIGQLMAK--PLKGKQRIFHYLIMVGIYQLTYTR-IPAHAALAETVNGAISLKR 111 Query: 140 GDEPKFINAVLDKVSRKEE 158 IN VL + R+++ Sbjct: 112 PQLKGLINGVLRQFQRQQQ 130 >gi|209542805|ref|YP_002275034.1| Fmu (Sun) domain-containing protein [Gluconacetobacter diazotrophicus PAl 5] gi|209530482|gb|ACI50419.1| Fmu (Sun) domain protein [Gluconacetobacter diazotrophicus PAl 5] Length = 438 Score = 38.2 bits (88), Expect = 0.42, Method: Composition-based stats. Identities = 13/80 (16%), Positives = 31/80 (38%), Gaps = 6/80 (7%) Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135 V+ +++ L ++ + ++L GV +++ P + V +A Sbjct: 70 VLRHMGTAGMVLEPFLKKEPPL----PV-RTVLLIGVAQILF-LDTPAHAAVGTAVSLAR 123 Query: 136 DFFYGDEPKFINAVLDKVSR 155 +NAVL +V++ Sbjct: 124 RRGLVPFAGLVNAVLRRVAQ 143 >gi|238788880|ref|ZP_04632670.1| Ribosomal RNA small subunit methyltransferase B [Yersinia frederiksenii ATCC 33641] gi|238722907|gb|EEQ14557.1| Ribosomal RNA small subunit methyltransferase B [Yersinia frederiksenii ATCC 33641] Length = 429 Score = 38.2 bits (88), Expect = 0.42, Method: Composition-based stats. Identities = 21/138 (15%), Positives = 47/138 (34%), Gaps = 16/138 (11%) Query: 20 RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79 R A +A+ Q+ G S + ++ + D + + G + Sbjct: 8 RSIAAKAISQVLDQGQSLSTVL-------------PGLHKSISDKDRALLQELCFGTLRV 54 Query: 80 KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139 ++ I + + + + ++ G+ +LI +P ++E V A Sbjct: 55 LPQLEWCIQQLMARPMTGKQ--RVFHYLIMVGLYQLIYTR-IPPHAALAETVEGATALKR 111 Query: 140 GDEPKFINAVLDKVSRKE 157 IN VL + R++ Sbjct: 112 PQLKGLINGVLRQFQRQQ 129 >gi|322373356|ref|ZP_08047892.1| ribosomal RNA small subunit methyltransferase B [Streptococcus sp. C150] gi|321278398|gb|EFX55467.1| ribosomal RNA small subunit methyltransferase B [Streptococcus sp. C150] Length = 443 Score = 38.2 bits (88), Expect = 0.45, Method: Composition-based stats. Identities = 26/152 (17%), Positives = 52/152 (34%), Gaps = 35/152 (23%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 + AR A++ L E+ E Y A +S D +++G Sbjct: 9 KKTARGQALEVL----------EEVFQE-GAYSNIALNARLSKSHLTDKDKALVTEMVYG 57 Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVL----------ELIECHSVPVEV 125 + RK ++ +++ + ++ +L +P Sbjct: 58 TVARKITLEWILAHVIEDRDKLE-------------AWVYDLLLLSLYQLAYLDKIPAHA 104 Query: 126 IISEYVCIAHDFFYGDEP-KFINAVLDKVSRK 156 ++++ V IA + K INAVL K+S + Sbjct: 105 VVNDAVSIAKNRGNKKGAEKLINAVLRKLSSQ 136 >gi|315122151|ref|YP_004062640.1| Fmu (Sun) domain protein [Candidatus Liberibacter solanacearum CLso-ZC1] gi|313495553|gb|ADR52152.1| Fmu (Sun) domain protein [Candidatus Liberibacter solanacearum CLso-ZC1] Length = 443 Score = 38.2 bits (88), Expect = 0.46, Method: Composition-based stats. Identities = 23/114 (20%), Positives = 43/114 (37%), Gaps = 10/114 (8%) Query: 62 LHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSV 121 H D R I+ + ID ++ L S L + R + +++ Sbjct: 42 SHKDQALVRAILSTTLRFLPRIDAVLDLLLVSSLSKK--KQSLRQLFRISIAQILYLDVA 99 Query: 122 PVEVIISEYVCIAHDFFYGDEPKF---INAVLDKVSRKEE--IKRSGCVSAITQ 170 V+ V A + F +N++L +VSR++ ++R +S I Q Sbjct: 100 DYAVV-DLAVEQAKR--DQENRHFSNLVNSILRRVSREKTELLQRFSSISVIPQ 150 >gi|315231384|ref|YP_004071820.1| tRNA/RNA cytosine-C5-methylase [Thermococcus barophilus MP] gi|315184412|gb|ADT84597.1| tRNA/RNA cytosine-C5-methylase [Thermococcus barophilus MP] Length = 451 Score = 37.8 bits (87), Expect = 0.48, Method: Composition-based stats. Identities = 18/86 (20%), Positives = 40/86 (46%), Gaps = 2/86 (2%) Query: 68 WFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVII 127 + + ++ ID +++S L + L++ L +++R GV E+ V + Sbjct: 49 LAHAYVFEIEKWRKKIDFIVNSVL-KGSKIEDLELYLANLIRIGVFEMKF-KGVNPAIAT 106 Query: 128 SEYVCIAHDFFYGDEPKFINAVLDKV 153 V + + + + KF+NA+L +V Sbjct: 107 DSVVRVVKEKYDLAKAKFVNALLREV 132 >gi|238763703|ref|ZP_04624662.1| Ribosomal RNA small subunit methyltransferase B [Yersinia kristensenii ATCC 33638] gi|238698005|gb|EEP90763.1| Ribosomal RNA small subunit methyltransferase B [Yersinia kristensenii ATCC 33638] Length = 429 Score = 37.8 bits (87), Expect = 0.49, Method: Composition-based stats. Identities = 22/138 (15%), Positives = 47/138 (34%), Gaps = 16/138 (11%) Query: 20 RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79 R A +A+ Q+ G S + ++ + D + + G + Sbjct: 8 RSIAAKAISQVLDQGQSLSTVL-------------PRLHKNISDKDRALLQELCFGTLRV 54 Query: 80 KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139 ++ I + + + I ++ G+ +LI +P ++E V A Sbjct: 55 LPQLEWCIKQLMARPMTGKQ--RIFHYLIMVGLYQLIYTR-IPPHAALAETVEGATALKR 111 Query: 140 GDEPKFINAVLDKVSRKE 157 IN VL + R++ Sbjct: 112 PQLKGLINGVLRQFQRQQ 129 >gi|28199632|ref|NP_779946.1| hypothetical protein PD1761 [Xylella fastidiosa Temecula1] gi|182682377|ref|YP_001830537.1| sun protein [Xylella fastidiosa M23] gi|46396863|sp|Q87AR1|RSMB_XYLFT RecName: Full=Ribosomal RNA small subunit methyltransferase B; AltName: Full=16S rRNA m5C967 methyltransferase; AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase rsmB gi|28057747|gb|AAO29595.1| conserved hypothetical protein [Xylella fastidiosa Temecula1] gi|182632487|gb|ACB93263.1| sun protein [Xylella fastidiosa M23] gi|307578659|gb|ADN62628.1| sun protein [Xylella fastidiosa subsp. fastidiosa GB514] Length = 431 Score = 37.8 bits (87), Expect = 0.49, Method: Composition-based stats. Identities = 21/92 (22%), Positives = 34/92 (36%), Gaps = 3/92 (3%) Query: 65 DLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVE 124 D I V+ R+ + ++ L R D L +L G +L + VP Sbjct: 41 DRALVEAICFAVLRRRPVYEAALTRWLAR--PLGRGDAQLRGLLMVGFAQL-DVLKVPPY 97 Query: 125 VIISEYVCIAHDFFYGDEPKFINAVLDKVSRK 156 +S V + F+NAVL + R+ Sbjct: 98 AALSATVDACRVLGWPHRVSFVNAVLRRAQRE 129 >gi|148978298|ref|ZP_01814803.1| Sun protein [Vibrionales bacterium SWAT-3] gi|145962457|gb|EDK27735.1| Sun protein [Vibrionales bacterium SWAT-3] Length = 426 Score = 37.8 bits (87), Expect = 0.49, Method: Composition-based stats. Identities = 25/139 (17%), Positives = 45/139 (32%), Gaps = 16/139 (11%) Query: 20 RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79 R AA L+Q+ G S + + + D + I +G + Sbjct: 4 RAAAANVLFQVVDKGHSLSHAL-------------PAAQKTISPRDHALLQEICYGALRY 50 Query: 80 KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139 + I++ L E + ++ G+ +L +P ++E V Sbjct: 51 LPRL-ESIANELMEN-PLKGKKRVFHHLILVGIYQLSFMR-IPSHAAVAETVEGTKTLRG 107 Query: 140 GDEPKFINAVLDKVSRKEE 158 INAVL R +E Sbjct: 108 PSLSGLINAVLRSYLRDQE 126 >gi|86147131|ref|ZP_01065447.1| Sun protein [Vibrio sp. MED222] gi|218711000|ref|YP_002418621.1| ribosomal RNA small subunit methyltransferase B [Vibrio splendidus LGP32] gi|85835015|gb|EAQ53157.1| Sun protein [Vibrio sp. MED222] gi|218324019|emb|CAV20381.1| Ribosomal RNA small subunit methyltransferase B [Vibrio splendidus LGP32] Length = 426 Score = 37.8 bits (87), Expect = 0.49, Method: Composition-based stats. Identities = 26/139 (18%), Positives = 46/139 (33%), Gaps = 16/139 (11%) Query: 20 RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79 R AA L+Q+ G S + + + D + I +G + Sbjct: 4 RAAAANVLFQVVDKGHSLSHAL-------------PAAQKTIRPRDHALLQEICYGALRY 50 Query: 80 KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139 + I++ L E S + ++ G+ +L +P ++E V Sbjct: 51 LPRL-ESIANELMEN-SLKGKKRVFHHLILVGIYQLSFMR-IPSHAAVAETVEATKTLRG 107 Query: 140 GDEPKFINAVLDKVSRKEE 158 INAVL R +E Sbjct: 108 PSLSGLINAVLRSYLRDQE 126 >gi|84393439|ref|ZP_00992196.1| Sun protein [Vibrio splendidus 12B01] gi|84375955|gb|EAP92845.1| Sun protein [Vibrio splendidus 12B01] Length = 426 Score = 37.8 bits (87), Expect = 0.49, Method: Composition-based stats. Identities = 26/139 (18%), Positives = 46/139 (33%), Gaps = 16/139 (11%) Query: 20 RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79 R AA L+Q+ G S + + + D + I +G + Sbjct: 4 RAAAANVLFQVVDKGHSLSHAL-------------PAAQKTIRPRDHALLQEICYGALRY 50 Query: 80 KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139 + I++ L E S + ++ G+ +L +P ++E V Sbjct: 51 LPRL-ESIANELMEN-SLKGKKRVFHHLILVGIYQLSFMR-IPSHAAVAETVEATKTLRG 107 Query: 140 GDEPKFINAVLDKVSRKEE 158 INAVL R +E Sbjct: 108 PSLSGLINAVLRSYLRDQE 126 >gi|330970341|gb|EGH70407.1| 16S rRNA methyltransferase B [Pseudomonas syringae pv. aceris str. M302273PT] Length = 441 Score = 37.8 bits (87), Expect = 0.50, Method: Composition-based stats. Identities = 20/95 (21%), Positives = 33/95 (34%), Gaps = 3/95 (3%) Query: 65 DLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVE 124 D + + G + + L + L + F D + ++L G+ +L +P Sbjct: 36 DRGLTQDLAFGTARWQPRLSALAAKLLQK--PFKAADADVDALLLVGLYQLFYSR-IPAH 92 Query: 125 VIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEI 159 I E V A +NAVL R E Sbjct: 93 AAIGETVGCADKLKKPWAKGLLNAVLRNAQRDGEA 127 >gi|323496958|ref|ZP_08101986.1| 16S rRNA methyltransferase B [Vibrio sinaloensis DSM 21326] gi|323318032|gb|EGA71015.1| 16S rRNA methyltransferase B [Vibrio sinaloensis DSM 21326] Length = 426 Score = 37.8 bits (87), Expect = 0.51, Method: Composition-based stats. Identities = 24/140 (17%), Positives = 45/140 (32%), Gaps = 16/140 (11%) Query: 20 RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79 R AA L+Q+ G S + + + D + I +G + Sbjct: 4 RAAAANVLFQVVDKGQSLSHAL-------------PAAQKTIRPRDHALLQEICYGALRY 50 Query: 80 KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139 + I++ L + + ++ G+ +L +P ++E V Sbjct: 51 LPRL-ESIANELMDN-PLKGKKRVFHHLILVGIYQLSFMR-IPAHAAVAETVEGTKTLRG 107 Query: 140 GDEPKFINAVLDKVSRKEEI 159 INAVL R +E Sbjct: 108 PSLRGLINAVLRSYLRDQEA 127 >gi|146313354|ref|YP_001178428.1| 16S rRNA methyltransferase B [Enterobacter sp. 638] gi|224493252|sp|A4WF97|RSMB_ENT38 RecName: Full=Ribosomal RNA small subunit methyltransferase B; AltName: Full=16S rRNA m5C967 methyltransferase; AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase rsmB gi|145320230|gb|ABP62377.1| 16S rRNA m(5)C-967 methyltransferase [Enterobacter sp. 638] Length = 428 Score = 37.8 bits (87), Expect = 0.52, Method: Composition-based stats. Identities = 21/130 (16%), Positives = 46/130 (35%), Gaps = 9/130 (6%) Query: 32 IIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCL 91 + + + I E + ++ ++ D + + GV+ + LIS + Sbjct: 6 LRSMAASAIEKVVEQGQSLSNILPPLQQKVSDKDKALLQELCFGVLRTLPQQEWLISKLM 65 Query: 92 TEKWSFSRLDMILCSI---LRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINA 148 + + +I + G +L+ +P ++E V A IN Sbjct: 66 SRP-----MTGKQRTIHYLIMVGFYQLLHTR-IPPHAALAETVEGAVVIKRPQLKGLING 119 Query: 149 VLDKVSRKEE 158 VL + R++E Sbjct: 120 VLRQFQRQQE 129 >gi|238792967|ref|ZP_04636597.1| Ribosomal RNA small subunit methyltransferase B [Yersinia intermedia ATCC 29909] gi|238727821|gb|EEQ19345.1| Ribosomal RNA small subunit methyltransferase B [Yersinia intermedia ATCC 29909] Length = 429 Score = 37.8 bits (87), Expect = 0.54, Method: Composition-based stats. Identities = 21/138 (15%), Positives = 48/138 (34%), Gaps = 16/138 (11%) Query: 20 RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79 R A +A+ Q+ G S + ++ ++ D + + G + Sbjct: 8 RSIAAKAISQVLDQGQSLSTVL-------------PGLQKNISDKDRALLQELCFGTLRV 54 Query: 80 KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139 ++ I + + + I ++ G+ +L+ +P ++E V A Sbjct: 55 LPQLEWCIQQLMARPMTGKQ--RIFHYLIMIGLYQLVYTR-IPPHAALAETVEGATALKR 111 Query: 140 GDEPKFINAVLDKVSRKE 157 IN VL + R++ Sbjct: 112 PQLKGLINGVLRQFQRQQ 129 >gi|71276447|ref|ZP_00652723.1| Fmu, rRNA SAM-dependent methyltransferase [Xylella fastidiosa Dixon] gi|71901280|ref|ZP_00683379.1| Fmu, rRNA SAM-dependent methyltransferase [Xylella fastidiosa Ann-1] gi|170730998|ref|YP_001776431.1| Sun protein [Xylella fastidiosa M12] gi|71162763|gb|EAO12489.1| Fmu, rRNA SAM-dependent methyltransferase [Xylella fastidiosa Dixon] gi|71728971|gb|EAO31103.1| Fmu, rRNA SAM-dependent methyltransferase [Xylella fastidiosa Ann-1] gi|167965791|gb|ACA12801.1| Sun protein [Xylella fastidiosa M12] Length = 429 Score = 37.8 bits (87), Expect = 0.55, Method: Composition-based stats. Identities = 21/92 (22%), Positives = 34/92 (36%), Gaps = 3/92 (3%) Query: 65 DLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVE 124 D I V+ R+ + ++ L R D L +L G +L + VP Sbjct: 41 DRALVEAICFAVLRRRPVYEAALTRWLAR--PLGRGDAQLRGLLMVGFAQL-DVLKVPPY 97 Query: 125 VIISEYVCIAHDFFYGDEPKFINAVLDKVSRK 156 +S V + F+NAVL + R+ Sbjct: 98 AALSATVDACRVLGWPHRVSFVNAVLRRAQRE 129 >gi|301155309|emb|CBW14775.1| 16S rRNA m5C967 methyltransferase, S-adenosyl-L-methionine-dependent [Haemophilus parainfluenzae T3T1] Length = 445 Score = 37.4 bits (86), Expect = 0.61, Method: Composition-based stats. Identities = 31/158 (19%), Positives = 55/158 (34%), Gaps = 19/158 (12%) Query: 1 MTIQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESV 60 M Q K + + R A Q + Q+ G S + ++ E V+S Sbjct: 1 MVFQRKKTEKSTALS---VRAIAAQVILQVLDQGKSLSTLLPE-------------VQSQ 44 Query: 61 YLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHS 120 DL + I G+ ++ +I L + I+ +L G+ +L+ Sbjct: 45 VKPQDLPLLQEITFGICRVLPRLENIIKKLLDK--PLKGKTRIVHCLLLVGLYQLLYMR- 101 Query: 121 VPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEE 158 VP + E V +N VL + R++E Sbjct: 102 VPAHAAVDEVVNATKSLKSDSFRGLVNGVLRRFLREQE 139 >gi|294638022|ref|ZP_06716282.1| ribosomal RNA small subunit methyltransferase B [Edwardsiella tarda ATCC 23685] gi|291088814|gb|EFE21375.1| ribosomal RNA small subunit methyltransferase B [Edwardsiella tarda ATCC 23685] Length = 430 Score = 37.4 bits (86), Expect = 0.62, Method: Composition-based stats. Identities = 20/109 (18%), Positives = 37/109 (33%), Gaps = 11/109 (10%) Query: 55 LDVESVYLHVDLEWFRVIIHGVMDRKQHID----LLISSCLTEKWSFSRLDMILCSILRA 110 D + + G + ++ L++ LT K L +L Sbjct: 31 PSAAQSLSEKDRALLQELCFGTLRVLPQLEWILQQLMAKALTGKQRP------LHYLLMV 84 Query: 111 GVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEI 159 G+ +L+ +P ++E V A IN VL + R++E Sbjct: 85 GLYQLVYTR-IPPHAALAETVDGATALKRPQLKGLINGVLRQFQRQQEA 132 >gi|90415406|ref|ZP_01223340.1| hypothetical protein GB2207_08821 [marine gamma proteobacterium HTCC2207] gi|90332729|gb|EAS47899.1| hypothetical protein GB2207_08821 [marine gamma proteobacterium HTCC2207] Length = 439 Score = 37.4 bits (86), Expect = 0.65, Method: Composition-based stats. Identities = 20/120 (16%), Positives = 45/120 (37%), Gaps = 3/120 (2%) Query: 37 TTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWS 96 E+I++ + + + S + D+ F+ + G + I+LL+ + + Sbjct: 7 VAEVIAQVLRGKSLSALLPEYASKVVEKDVGLFKQLCFGTLRWYPAIELLLQELMQK--P 64 Query: 97 FSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRK 156 + + +L G+ +L+ + I+E V +NAVL R+ Sbjct: 65 MREKEFEIQGLLACGLYQLMHTR-IADHAAINETVTAVTKLKRPWAKGLVNAVLRNFLRQ 123 >gi|110678030|ref|YP_681037.1| rRNA methyltransferase RsmB [Roseobacter denitrificans OCh 114] gi|109454146|gb|ABG30351.1| rRNA methyltransferase RsmB [Roseobacter denitrificans OCh 114] Length = 423 Score = 37.4 bits (86), Expect = 0.68, Method: Composition-based stats. Identities = 16/95 (16%), Positives = 33/95 (34%), Gaps = 12/95 (12%) Query: 63 HVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVP 122 D + + + D ++ L++ + + LR G +EL C Sbjct: 40 PEDRARAARLAQDTLRGLERADRILQKHLSKYPPL-----TVRNALRVGAVEL--CTGTA 92 Query: 123 VEVIISEYVCIA---HDFFYGDEPKFINAVLDKVS 154 +++ V + + + NAVL KV+ Sbjct: 93 AHGVVNAMVELVSRHKHYSHLK--GLTNAVLRKVA 125 >gi|149190437|ref|ZP_01868708.1| Sun protein [Vibrio shilonii AK1] gi|148835691|gb|EDL52657.1| Sun protein [Vibrio shilonii AK1] Length = 425 Score = 37.4 bits (86), Expect = 0.71, Method: Composition-based stats. Identities = 22/139 (15%), Positives = 43/139 (30%), Gaps = 16/139 (11%) Query: 20 RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79 R AA L+Q+ G S + + + D + I G + Sbjct: 4 RAAAANILFQVVDKGQSLSSAL-------------PLGQQQVKPRDQALLQEICFGALRI 50 Query: 80 KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139 ++ + S + + + ++ G+ ++ +P + E V Sbjct: 51 LPRLESVASELMDK--PLKGKQRVFHHLILVGIYQIGHMR-IPAHAAVGETVEATKTLKG 107 Query: 140 GDEPKFINAVLDKVSRKEE 158 INAVL R +E Sbjct: 108 PRLRGLINAVLRNYQRNQE 126 >gi|311696633|gb|ADP99506.1| Fmu, rRNA SAM-dependent methyltransferase [marine bacterium HP15] Length = 426 Score = 37.4 bits (86), Expect = 0.74, Method: Composition-based stats. Identities = 13/88 (14%), Positives = 31/88 (35%), Gaps = 3/88 (3%) Query: 69 FRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIIS 128 + + +G +D +++ L + + D I+ ++ + +L V ++ Sbjct: 37 LQALCYGTCRWFYRLDGELNNRLKK--PLRKPDRIIHHLMLVALFQLRFSQQANYAV-LN 93 Query: 129 EYVCIAHDFFYGDEPKFINAVLDKVSRK 156 E V +N VL R+ Sbjct: 94 ETVEACRALDKPHLTGLVNGVLRAAERE 121 >gi|284032217|ref|YP_003382148.1| Fmu (Sun) domain-containing protein [Kribbella flavida DSM 17836] gi|283811510|gb|ADB33349.1| Fmu (Sun) domain protein [Kribbella flavida DSM 17836] Length = 459 Score = 37.4 bits (86), Expect = 0.74, Method: Composition-based stats. Identities = 26/156 (16%), Positives = 57/156 (36%), Gaps = 15/156 (9%) Query: 1 MTIQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESV 60 M+ + ++ R R A + + + G ++ + R + Sbjct: 1 MSDR-TPRNRAPQRRPDKVRQVAYRVI--RQVNGEDGYANLALNKALR---------DQR 48 Query: 61 YLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHS 120 D + ++HG + + D ++ ++ + LD L +LR G +L+ Sbjct: 49 LSGRDAAFCTELVHGTLRWQGAYDAFLARSVSR--PLADLDPELLDLLRLGAHQLLRMR- 105 Query: 121 VPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRK 156 V ++E V + +NAVL K+S++ Sbjct: 106 VDSYAAVNEMVTLTRAEVGQSRSGLVNAVLRKISQR 141 >gi|238797213|ref|ZP_04640714.1| Ribosomal RNA small subunit methyltransferase B [Yersinia mollaretii ATCC 43969] gi|238718850|gb|EEQ10665.1| Ribosomal RNA small subunit methyltransferase B [Yersinia mollaretii ATCC 43969] Length = 431 Score = 37.4 bits (86), Expect = 0.78, Method: Composition-based stats. Identities = 21/138 (15%), Positives = 48/138 (34%), Gaps = 16/138 (11%) Query: 20 RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79 R A +A+ Q+ G S + ++ + + D + + G + Sbjct: 8 RSIAAKAISQVLDQGQSLSTVL-------------PGLHNSISDKDRALLQELCFGTLRV 54 Query: 80 KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139 ++ I + + + + ++ G+ +LI +P ++E V A Sbjct: 55 LPQLEWCIQQLMARPMTGKQ--RVFHYLIMVGLYQLIYTR-IPHHAALAETVEGATALKR 111 Query: 140 GDEPKFINAVLDKVSRKE 157 IN VL + R++ Sbjct: 112 PQLKGLINGVLRQFQRQQ 129 >gi|237728623|ref|ZP_04559104.1| 16S rRNA m5C967 methyltransferase [Citrobacter sp. 30_2] gi|226909245|gb|EEH95163.1| 16S rRNA m5C967 methyltransferase [Citrobacter sp. 30_2] Length = 439 Score = 37.0 bits (85), Expect = 0.80, Method: Composition-based stats. Identities = 16/127 (12%), Positives = 45/127 (35%), Gaps = 3/127 (2%) Query: 32 IIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCL 91 + + + E + ++ ++ D + + GV+ ++ +I + Sbjct: 17 LRSMTAQAVEQVVEKGQSLSNVLPAMQQKVADKDKALLQELCFGVLRTLSQLEWMIQQLM 76 Query: 92 TEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLD 151 + + + ++ G +L+ +P ++E V A IN VL Sbjct: 77 ERPMTGKQ--RTVHYLIMVGFYQLLHTR-IPAHAALAETVEGAVVIKRPQLKGLINGVLR 133 Query: 152 KVSRKEE 158 + R+++ Sbjct: 134 QFQRRQD 140 >gi|217977604|ref|YP_002361751.1| sun protein [Methylocella silvestris BL2] gi|217502980|gb|ACK50389.1| sun protein [Methylocella silvestris BL2] Length = 448 Score = 37.0 bits (85), Expect = 0.82, Method: Composition-based stats. Identities = 18/99 (18%), Positives = 33/99 (33%), Gaps = 12/99 (12%) Query: 65 DLEWFRVIIHGVMDRKQHIDLLISSCLTEK--WSFSRLDMILCSILRAGVLELIECHSVP 122 D+ R I+ + R I + L + + L+ L + +++ VP Sbjct: 56 DVALTRSIVTAALRRLGTIRKTLGEFLDKGLPRPVAHLEWTLIA----AAAQILF-LDVP 110 Query: 123 VEVIISEYVCIAHDFFYGDEPKF---INAVLDKVSRKEE 158 + V F INAVL ++R + Sbjct: 111 DHAAVDLAVRATR--LENKSAPFAGVINAVLRNIARGRD 147 >gi|284161464|ref|YP_003400087.1| Fmu (Sun) domain protein [Archaeoglobus profundus DSM 5631] gi|284011461|gb|ADB57414.1| Fmu (Sun) domain protein [Archaeoglobus profundus DSM 5631] Length = 443 Score = 37.0 bits (85), Expect = 0.91, Method: Composition-based stats. Identities = 26/147 (17%), Positives = 52/147 (35%), Gaps = 8/147 (5%) Query: 26 ALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDL 85 +Y +++ ++I E + A + H + + R ID Sbjct: 1 MIYTQELV-AEVLKVIEETKLSEKEAIKRCLSGKISDHAIWSSVHAYVFEIEKRLNLIDF 59 Query: 86 LISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKF 145 ++ +C E F + + + ++LR GV E+ V + V I F Sbjct: 60 ILRNCFRE---FDKQNTVFKNLLRVGVYEM-HFKGVHPALATDSIVRIVKQRFNLKMASL 115 Query: 146 INAVLDKVSR---KEEIKRSGCVSAIT 169 NAVL + + + ++ G V + Sbjct: 116 ANAVLRRAEKFDYERRFRKLGKVKRLA 142 >gi|149923466|ref|ZP_01911869.1| serine/threonine kinase PKN8 [Plesiocystis pacifica SIR-1] gi|149815657|gb|EDM75186.1| serine/threonine kinase PKN8 [Plesiocystis pacifica SIR-1] Length = 1489 Score = 37.0 bits (85), Expect = 0.95, Method: Composition-based stats. Identities = 19/93 (20%), Positives = 31/93 (33%), Gaps = 4/93 (4%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV--II 73 R AR A ALY+ + S + Y D E + D + Sbjct: 898 RSGARERAA-ALYEQAGVPSSLERALEIYRDLHQFEDARRIAERLAEGGDAAHLAEAQTL 956 Query: 74 HGVMDRKQHIDLLISSCLTEKWSFSRLDMILCS 106 + + +DL + + L E W + +L S Sbjct: 957 RRWAEPETSLDLDLRAALDEGWHIEQ-PGVLRS 988 >gi|297537409|ref|YP_003673178.1| sun protein [Methylotenera sp. 301] gi|297256756|gb|ADI28601.1| sun protein [Methylotenera sp. 301] Length = 439 Score = 36.6 bits (84), Expect = 1.0, Method: Composition-based stats. Identities = 13/93 (13%), Positives = 35/93 (37%), Gaps = 9/93 (9%) Query: 69 FRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIIS 128 + + +G + ID + L + + R++ ++L + +L+ + V+ + Sbjct: 43 AQDLSYGTLRFYGEIDAYLVQLLEKPLTDDRIN----ALLLVAIYQLLHDKADSFTVV-N 97 Query: 129 EYVCIAHDFF--YGDE--PKFINAVLDKVSRKE 157 + V +NA+L R++ Sbjct: 98 QAVHAVSQLKRPAPKSWAKGLVNAILRNFLRQK 130 >gi|254437147|ref|ZP_05050641.1| Methyltransferase small domain family [Octadecabacter antarcticus 307] gi|198252593|gb|EDY76907.1| Methyltransferase small domain family [Octadecabacter antarcticus 307] Length = 410 Score = 36.6 bits (84), Expect = 1.1, Method: Composition-based stats. Identities = 17/96 (17%), Positives = 35/96 (36%), Gaps = 8/96 (8%) Query: 62 LHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSV 121 D + + + D +++ L + S + ++LR +EL Sbjct: 25 SPEDRARAQRLTTETLRGLARADRMLARFLQKTPPLS-----VRNVLRLCTVEL-AGGEA 78 Query: 122 PVEVIISEYVC-IAHDFFYGDEPKFINAVLDKVSRK 156 V+ + V +A + +NAVL KV+ + Sbjct: 79 AYGVV-NAGVEMVARNKRTSSMKGLVNAVLRKVAAE 113 >gi|317486052|ref|ZP_07944905.1| ribosomal RNA small subunit methyltransferase B [Bilophila wadsworthia 3_1_6] gi|316922679|gb|EFV43912.1| ribosomal RNA small subunit methyltransferase B [Bilophila wadsworthia 3_1_6] Length = 364 Score = 36.6 bits (84), Expect = 1.1, Method: Composition-based stats. Identities = 12/63 (19%), Positives = 22/63 (34%) Query: 98 SRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKE 157 +L + ++ EL+ +P +S V F + N VL + R Sbjct: 5 EKLPASMKLMIGIAAYELLYLDRIPAHASVSAAVDAVRARFGQGLSRVANGVLRSLIRLS 64 Query: 158 EIK 160 E + Sbjct: 65 ESE 67 >gi|255026239|ref|ZP_05298225.1| transcription antitermination protein NusB [Listeria monocytogenes FSL J2-003] Length = 36 Score = 36.6 bits (84), Expect = 1.1, Method: Composition-based stats. Identities = 11/27 (40%), Positives = 17/27 (62%) Query: 15 RRGIARLAAVQALYQIDIIGCSTTEII 41 +R AR A+QAL+QI++ S + I Sbjct: 2 KRREAREKALQALFQIELNEMSLDQAI 28 >gi|325267933|ref|ZP_08134582.1| ribosomal RNA small subunit methyltransferase B [Kingella denitrificans ATCC 33394] gi|324980619|gb|EGC16282.1| ribosomal RNA small subunit methyltransferase B [Kingella denitrificans ATCC 33394] Length = 421 Score = 36.6 bits (84), Expect = 1.1, Method: Composition-based stats. Identities = 19/104 (18%), Positives = 38/104 (36%), Gaps = 5/104 (4%) Query: 55 LDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLE 114 L E D + + +G + +++ L + + +L + L + + Sbjct: 31 LAGEPALSAQDKGMLQDLAYGCQRFYGSLHFMLNRLLNK--PVD--NPLLYAHLLVALYQ 86 Query: 115 LIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEE 158 L + P V+ +E V G F NA+L + R+ E Sbjct: 87 LNHTRNAPYAVV-NETVRHIGKIGRGQYRSFANAILRRFLRERE 129 >gi|120552984|ref|YP_957335.1| sun protein [Marinobacter aquaeolei VT8] gi|120322833|gb|ABM17148.1| 16S rRNA m(5)C-967 methyltransferase [Marinobacter aquaeolei VT8] Length = 433 Score = 36.6 bits (84), Expect = 1.1, Method: Composition-based stats. Identities = 13/88 (14%), Positives = 30/88 (34%), Gaps = 3/88 (3%) Query: 69 FRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIIS 128 + I +G ++ ++ L + + D I+ ++ + +L V ++ Sbjct: 44 LQAICYGTCRWFHRLEGELNQRLKK--PLRKPDRIIHHLMLVALFQLRYSEQATYAV-LN 100 Query: 129 EYVCIAHDFFYGDEPKFINAVLDKVSRK 156 E V +N VL R+ Sbjct: 101 ETVEACRALDKPHLTGLVNGVLRAAERE 128 >gi|223984315|ref|ZP_03634458.1| hypothetical protein HOLDEFILI_01752 [Holdemania filiformis DSM 12042] gi|223963715|gb|EEF68084.1| hypothetical protein HOLDEFILI_01752 [Holdemania filiformis DSM 12042] Length = 412 Score = 36.6 bits (84), Expect = 1.2, Method: Composition-based stats. Identities = 23/143 (16%), Positives = 47/143 (32%), Gaps = 34/143 (23%) Query: 20 RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79 R A Q L I++E + + W +I+GV+ Sbjct: 5 RKRAWQGL----------NAILNEGQYANLWLRQHG---QTLSEEEKRWVTAVIYGVLRH 51 Query: 80 KQHIDLLISSCLTEKWSFSRL-----DMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134 ++ + +W + L + + +L V +L I+++ V + Sbjct: 52 REPL----------RWQWRDLVRNVPEPSVAVLLDMSVYQLFYLDKGAEYAIVNDAVELC 101 Query: 135 HDFFYGDEPK-FINAVLDKVSRK 156 K +NAVL ++ R+ Sbjct: 102 -----PRSKKGLVNAVLRQLLRR 119 >gi|256825115|ref|YP_003149075.1| tRNA/rRNA cytosine-C5-methylase [Kytococcus sedentarius DSM 20547] gi|256688508|gb|ACV06310.1| tRNA/rRNA cytosine-C5-methylase [Kytococcus sedentarius DSM 20547] Length = 502 Score = 36.6 bits (84), Expect = 1.2, Method: Composition-based stats. Identities = 19/94 (20%), Positives = 37/94 (39%), Gaps = 3/94 (3%) Query: 65 DLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVE 124 D + + G + ++ DL+I+ + LD L LR G + + VP Sbjct: 66 DAAFATELAFGTVRQQGLYDLVIARA--TGRAVDTLDPELMRTLRLGAHQALSMR-VPPH 122 Query: 125 VIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEE 158 + V +A K +NA + +++ K+ Sbjct: 123 AAADQTVALARWVNGAGPAKLVNAAMHRMTEKDR 156 >gi|56698200|ref|YP_168572.1| ribosomal RNA small subunit methyltransferase B, putative [Ruegeria pomeroyi DSS-3] gi|56679937|gb|AAV96603.1| ribosomal RNA small subunit methyltransferase B, putative [Ruegeria pomeroyi DSS-3] Length = 423 Score = 36.6 bits (84), Expect = 1.2, Method: Composition-based stats. Identities = 28/139 (20%), Positives = 47/139 (33%), Gaps = 20/139 (14%) Query: 17 GIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGV 76 AR +A+ L QI G +E + R + + + L Sbjct: 6 TQARQSAIDLLDQILGEGRLLSECLGAGALDRLPPEERARAQRLTLD------------T 53 Query: 77 MDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEV-IISEYVCIAH 135 + + D L+ L + S + + LR G +EL + V + E V + Sbjct: 54 LRGLERADRLLKPHLQKAPPLS-----VRNALRLGTVELAHGEAAHGVVHSMVEIVGRSR 108 Query: 136 DFFYGDEPKFINAVLDKVS 154 +NAVL KV+ Sbjct: 109 RHGRLK--GLVNAVLRKVA 125 >gi|254450298|ref|ZP_05063735.1| rRNA methyltransferase RsmB [Octadecabacter antarcticus 238] gi|198264704|gb|EDY88974.1| rRNA methyltransferase RsmB [Octadecabacter antarcticus 238] Length = 410 Score = 36.6 bits (84), Expect = 1.3, Method: Composition-based stats. Identities = 16/96 (16%), Positives = 35/96 (36%), Gaps = 8/96 (8%) Query: 62 LHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSV 121 D + + + D +++ L + S + ++LR +EL + Sbjct: 25 SPEDRARAQRLTTETLRGLARADRMLARFLAKTPPLS-----VRNVLRLCTVELAGGEAA 79 Query: 122 PVEVIISEYVC-IAHDFFYGDEPKFINAVLDKVSRK 156 +++ V +A +NAVL KV+ + Sbjct: 80 HG--VVNAGVEMVARSQRTSSMKGLVNAVLRKVAAE 113 >gi|21233175|ref|NP_639092.1| Sun protein [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|46396948|sp|Q8P4G1|RSMB_XANCP RecName: Full=Ribosomal RNA small subunit methyltransferase B; AltName: Full=16S rRNA m5C967 methyltransferase; AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase rsmB gi|21115024|gb|AAM43004.1| Sun protein [Xanthomonas campestris pv. campestris str. ATCC 33913] Length = 437 Score = 36.6 bits (84), Expect = 1.3, Method: Composition-based stats. Identities = 19/108 (17%), Positives = 35/108 (32%), Gaps = 3/108 (2%) Query: 49 FCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSIL 108 A+ + V D I V+ R+ D+ + L D L ++L Sbjct: 31 LKAELTAALPGVSDPRDRALVEAICFAVLRRRPAYDVALRQWLERPLPPR--DAELKALL 88 Query: 109 RAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRK 156 ++ +P +S V + +NAVL + R+ Sbjct: 89 -MAGFAQLDVLQLPAHAALSATVEACRALGRPRQAGMVNAVLRRAQRE 135 >gi|295665386|ref|XP_002793244.1| RING finger protein [Paracoccidioides brasiliensis Pb01] gi|226278158|gb|EEH33724.1| RING finger protein [Paracoccidioides brasiliensis Pb01] Length = 782 Score = 36.6 bits (84), Expect = 1.3, Method: Composition-based stats. Identities = 13/75 (17%), Positives = 27/75 (36%), Gaps = 8/75 (10%) Query: 3 IQDNKKDLKLSHRR---GIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVES 59 I ++ +K+ RR +AR A+Q + E ++ + ELDV Sbjct: 149 ITRQQRRVKMEERRAEIRVAREEAIQ-----QRSDSRSEEALNNLPNEDDIDEMELDVPG 203 Query: 60 VYLHVDLEWFRVIIH 74 ++ ++ Sbjct: 204 WEEKGRWVFYLDLVT 218 >gi|212695669|ref|ZP_03303797.1| hypothetical protein ANHYDRO_00186 [Anaerococcus hydrogenalis DSM 7454] gi|212677342|gb|EEB36949.1| hypothetical protein ANHYDRO_00186 [Anaerococcus hydrogenalis DSM 7454] Length = 426 Score = 36.6 bits (84), Expect = 1.3, Method: Composition-based stats. Identities = 13/49 (26%), Positives = 19/49 (38%), Gaps = 2/49 (4%) Query: 110 AGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEE 158 G+ + I++E V + Y F+NAVL R EE Sbjct: 77 IGIYNI-HFLDRKNYAIVNELVNLTKKVSY-KSKSFVNAVLRSYIRDEE 123 >gi|66770115|ref|YP_244877.1| Sun protein [Xanthomonas campestris pv. campestris str. 8004] gi|66575447|gb|AAY50857.1| Sun protein [Xanthomonas campestris pv. campestris str. 8004] Length = 437 Score = 36.6 bits (84), Expect = 1.3, Method: Composition-based stats. Identities = 19/108 (17%), Positives = 35/108 (32%), Gaps = 3/108 (2%) Query: 49 FCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSIL 108 A+ + V D I V+ R+ D+ + L D L ++L Sbjct: 31 LKAELTAALPGVSDPRDRALVEAICFAVLRRRPAYDVALRQWLERPLPPR--DAELKALL 88 Query: 109 RAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRK 156 ++ +P +S V + +NAVL + R+ Sbjct: 89 -MAGFAQLDVLQLPAHAALSATVEACRALGRPRQAGMVNAVLRRAQRE 135 >gi|195122964|ref|XP_002005980.1| GI18797 [Drosophila mojavensis] gi|193911048|gb|EDW09915.1| GI18797 [Drosophila mojavensis] Length = 965 Score = 36.2 bits (83), Expect = 1.4, Method: Composition-based stats. Identities = 15/78 (19%), Positives = 32/78 (41%), Gaps = 4/78 (5%) Query: 5 DNKKDLKLSHRRGIARLAA--VQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYL 62 D K + +R + A +QA++QI + G ++ E ++L+ Sbjct: 399 PKHPDYKYNAKRSVYNELAAPLQAVFQIPLTGAEVFAVLKELRGRYRRELSKLNSLGDKY 458 Query: 63 HVDLEWFRVI--IHGVMD 78 L +F + + GV++ Sbjct: 459 KSRLWYFEKMHFLRGVIE 476 >gi|188993323|ref|YP_001905333.1| Ribosomal RNA small subunit methyltransferase B [Xanthomonas campestris pv. campestris str. B100] gi|167735083|emb|CAP53295.1| Ribosomal RNA small subunit methyltransferase B [Xanthomonas campestris pv. campestris] Length = 436 Score = 36.2 bits (83), Expect = 1.4, Method: Composition-based stats. Identities = 19/108 (17%), Positives = 35/108 (32%), Gaps = 3/108 (2%) Query: 49 FCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSIL 108 A+ + V D I V+ R+ D+ + L D L ++L Sbjct: 30 LKAELTAALPGVSDPRDRALVEAICFAVLRRRPAYDVALRQWLERPLPPR--DAELKALL 87 Query: 109 RAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRK 156 ++ +P +S V + +NAVL + R+ Sbjct: 88 -MAGFAQLDVLQLPAHAALSATVEACRALGRPRQAGMVNAVLRRAQRE 134 >gi|168333376|ref|ZP_02691656.1| Signal Transduction Histidine Kinase (STHK) with CheB and CheR activity [Epulopiscium sp. 'N.t. morphotype B'] Length = 503 Score = 36.2 bits (83), Expect = 1.4, Method: Composition-based stats. Identities = 16/54 (29%), Positives = 26/54 (48%), Gaps = 9/54 (16%) Query: 86 LISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139 LIS L EK + +I + ++EL++ +P VII+E + H F Sbjct: 292 LISHKLAEK-------SVDRAIGK--IIELLQQEYIPKGVIINESYELIHSFGD 336 >gi|88809531|ref|ZP_01125039.1| hypothetical protein WH7805_10274 [Synechococcus sp. WH 7805] gi|88786750|gb|EAR17909.1| hypothetical protein WH7805_10274 [Synechococcus sp. WH 7805] Length = 1070 Score = 36.2 bits (83), Expect = 1.5, Method: Composition-based stats. Identities = 29/172 (16%), Positives = 60/172 (34%), Gaps = 41/172 (23%) Query: 2 TIQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVY 61 + + ++ L+ R +R ++I + G +SE +D + Sbjct: 721 SAKQSQAARDLARTRKGSR-------FRIALTGTPVENRVSELWAL-------MDFLNPN 766 Query: 62 LHVDLEWFRVIIH------GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLEL 115 + + E+FR G M + + + + RL +I+ Sbjct: 767 VLGEEEFFRQRYRMPIERYGDMSSLRDLKSRVGPFI-----LRRL-KTDKAII------- 813 Query: 116 IECHSVPVEVIISEYVCIAHDFFYGDE--PKFINAVLDKVSRKEEIKRSGCV 165 +P +V +SE+V ++ + K + LD ++R KR G V Sbjct: 814 ---SDLPEKVELSEWVGLSKE---QKSLYAKTVENTLDAIARAPRGKRHGQV 859 >gi|283835706|ref|ZP_06355447.1| hypothetical protein CIT292_10098 [Citrobacter youngae ATCC 29220] gi|291068385|gb|EFE06494.1| ribosomal RNA small subunit methyltransferase B [Citrobacter youngae ATCC 29220] Length = 429 Score = 36.2 bits (83), Expect = 1.6, Method: Composition-based stats. Identities = 22/139 (15%), Positives = 49/139 (35%), Gaps = 16/139 (11%) Query: 20 RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79 R A QA+ Q+ G S + ++ ++ D + + G + Sbjct: 8 RSMAAQAVEQVVEKGQSLSNVL-------------PAMQQKVADKDKALLQELCFGALRT 54 Query: 80 KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139 ++ +I + + + + ++ G +L+ +P ++E V A Sbjct: 55 LSQLEWMIQQLMERPMTGKQ--RTVHYLIMVGFYQLLHTR-IPPHAALAETVEGAVVIKR 111 Query: 140 GDEPKFINAVLDKVSRKEE 158 IN VL + R++E Sbjct: 112 PQLKGLINGVLRQFQRRQE 130 >gi|121602907|ref|YP_988410.1| putative ribosomal RNA small subunit methyltransferase B [Bartonella bacilliformis KC583] gi|120615084|gb|ABM45685.1| putative ribosomal RNA small subunit methyltransferase B [Bartonella bacilliformis KC583] Length = 456 Score = 36.2 bits (83), Expect = 1.7, Method: Composition-based stats. Identities = 17/98 (17%), Positives = 29/98 (29%), Gaps = 14/98 (14%) Query: 65 DLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVE 124 D R I+ + + I +S LT L + +++ +P Sbjct: 49 DRLLCRAILIAALRHRGQIQAALSRFLTR--PLPSKAFALQHLFHISAAQILY-LDIPDY 105 Query: 125 VIISEYVCIAHD------FFYGDEPKFINAVLDKVSRK 156 I V A F +NA+L +R Sbjct: 106 AAIDLAVRAAKIDPRTRCFSG-----LVNAILRNFARD 138 >gi|74316034|ref|YP_313774.1| Fmu, rRNA SAM-dependent methyltransferase [Thiobacillus denitrificans ATCC 25259] gi|74055529|gb|AAZ95969.1| Fmu, rRNA SAM-dependent methyltransferase [Thiobacillus denitrificans ATCC 25259] Length = 418 Score = 36.2 bits (83), Expect = 1.7, Method: Composition-based stats. Identities = 19/88 (21%), Positives = 34/88 (38%), Gaps = 8/88 (9%) Query: 69 FRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIIS 128 + +++G + + ID + + L + D L S+LR + ++ P I+ Sbjct: 41 LQDLVYGSLRQLGRIDAWLDALLERPLT----DPHLESLLRIALYQMAYTR-APAHAIVH 95 Query: 129 EYVCIAHDFFYGDEPKFINAVLDKVSRK 156 V A G NAVL R+ Sbjct: 96 NAVSAA---GGGWRRGLANAVLRNFQRR 120 >gi|331215993|ref|XP_003320676.1| hypothetical protein PGTG_02698 [Puccinia graminis f. sp. tritici CRL 75-36-700-3] gi|309299666|gb|EFP76257.1| hypothetical protein PGTG_02698 [Puccinia graminis f. sp. tritici CRL 75-36-700-3] Length = 541 Score = 36.2 bits (83), Expect = 1.8, Method: Composition-based stats. Identities = 19/91 (20%), Positives = 29/91 (31%), Gaps = 20/91 (21%) Query: 69 FRVIIHGVMD-RKQHIDLL------ISSCLTEKWSF-----SRLDMILCSILRAGVLELI 116 + G+M + Q ID + L KW R+ + +ILR + Sbjct: 28 LDEYLKGIMQLQHQSIDQANVDRSALMESLKSKWELRQANADRIAKLEEAILRMAI---K 84 Query: 117 ECHSVPVEVIISEY--VCIAHDFFYGDEPKF 145 P I E + + F D P F Sbjct: 85 NESDTPSTRI--EAGRIDL-QRFRSSDGPLF 112 >gi|262202278|ref|YP_003273486.1| Fmu (Sun) domain-containing protein [Gordonia bronchialis DSM 43247] gi|262085625|gb|ACY21593.1| Fmu (Sun) domain protein [Gordonia bronchialis DSM 43247] Length = 460 Score = 36.2 bits (83), Expect = 1.8, Method: Composition-based stats. Identities = 25/140 (17%), Positives = 47/140 (33%), Gaps = 14/140 (10%) Query: 19 ARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMD 78 AR+AA L + ++ + R T D + +G Sbjct: 19 ARVAARDTLRAVRERDAYANLVLPKMLRERHI--T---------GRDAALATELTYGTAR 67 Query: 79 RKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFF 138 + + + +D L +LR G +L+ + +S V + Sbjct: 68 AQGI--IDAIIAAAAGRPVAEIDGQLLDVLRLGAYQLL-RTRIGSHAAVSTSVDLVRAEN 124 Query: 139 YGDEPKFINAVLDKVSRKEE 158 F+NAVL K+S+++E Sbjct: 125 GMGPAGFVNAVLRKISQRDE 144 >gi|66812050|ref|XP_640204.1| hypothetical protein DDB_G0282689 [Dictyostelium discoideum AX4] gi|60468194|gb|EAL66204.1| hypothetical protein DDB_G0282689 [Dictyostelium discoideum AX4] Length = 798 Score = 35.8 bits (82), Expect = 1.8, Method: Composition-based stats. Identities = 17/81 (20%), Positives = 33/81 (40%), Gaps = 12/81 (14%) Query: 48 RFCADTELD------VESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFS--- 98 RF D+E D D+++ I+H + ++ I+ + + K+S Sbjct: 48 RFREDSENDSFGISNNNGNGNGGDIDY--QILHNSVKNQEEINQKVKNRFNRKYSKEIIK 105 Query: 99 -RLDMILCSILRAGVLELIEC 118 RL + +I R + EL+ Sbjct: 106 FRLTSLEEAITRIKIAELLFQ 126 >gi|307543963|ref|YP_003896442.1| Sun protein [Halomonas elongata DSM 2581] gi|307215987|emb|CBV41257.1| K03500 Sun protein [Halomonas elongata DSM 2581] Length = 447 Score = 35.8 bits (82), Expect = 1.9, Method: Composition-based stats. Identities = 18/100 (18%), Positives = 36/100 (36%), Gaps = 3/100 (3%) Query: 57 VESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELI 116 E + D F+ + G ++ L L + F D + ++L G+ +L+ Sbjct: 42 DEHQVVARDRGLFKELCFGTCRALPRLEALAGKLLEK--PFKTRDADIQALLLVGIYQLL 99 Query: 117 ECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRK 156 VP + E A + +N L ++ R+ Sbjct: 100 YLR-VPAHAAVGETAGAARLLSKAWATRVLNGCLRRLQRE 138 >gi|224543282|ref|ZP_03683821.1| hypothetical protein CATMIT_02482 [Catenibacterium mitsuokai DSM 15897] gi|224523815|gb|EEF92920.1| hypothetical protein CATMIT_02482 [Catenibacterium mitsuokai DSM 15897] Length = 80 Score = 35.8 bits (82), Expect = 1.9, Method: Composition-based stats. Identities = 18/79 (22%), Positives = 31/79 (39%), Gaps = 9/79 (11%) Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75 R IAR AV A+YQ + S E+ D + ++ +I Sbjct: 6 RQIAREKAVIAVYQWLTVDASKEELKEYVHA---------DEALIEGRSAEQFCYWLIDT 56 Query: 76 VMDRKQHIDLLISSCLTEK 94 VM+ K + L+++ L + Sbjct: 57 VMENKGSYEALLNTKLKKD 75 >gi|254466360|ref|ZP_05079771.1| Fmu [Rhodobacterales bacterium Y4I] gi|206687268|gb|EDZ47750.1| Fmu [Rhodobacterales bacterium Y4I] Length = 420 Score = 35.8 bits (82), Expect = 2.0, Method: Composition-based stats. Identities = 19/106 (17%), Positives = 36/106 (33%), Gaps = 14/106 (13%) Query: 59 SVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELI-- 116 D + + + + D L+ L + ++ + LR G +EL Sbjct: 35 EKLAPEDRARAQRLAVETLRSLERADRLLKKHLKKTPPL-----MVMNALRLGTVELCSG 89 Query: 117 --ECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIK 160 V V I ++ +G +NAVL KV+ + + Sbjct: 90 GAAHGVVNAMVAI-----VSKHRRHGQLKGLVNAVLRKVAEEGPAE 130 >gi|227115242|ref|ZP_03828898.1| 16S rRNA methyltransferase B [Pectobacterium carotovorum subsp. brasiliensis PBR1692] Length = 429 Score = 35.8 bits (82), Expect = 2.0, Method: Composition-based stats. Identities = 16/97 (16%), Positives = 34/97 (35%), Gaps = 3/97 (3%) Query: 62 LHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSV 121 D + + GV+ ++ I + + + L ++ G+ +L + Sbjct: 37 SDKDRALLQELCFGVLRVLPQLEWCIQQLMAK--PLTGKQRTLHYLIMVGIYQLHYTR-I 93 Query: 122 PVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEE 158 P ++E V IN VL + R++E Sbjct: 94 PPHAALAETVEGTVSLKRPQLKGLINGVLRQFQRQQE 130 >gi|54307485|ref|YP_128505.1| putative transcriptional regulator [Photobacterium profundum SS9] gi|46911905|emb|CAG18703.1| Putative transcriptional regulator [Photobacterium profundum SS9] Length = 188 Score = 35.8 bits (82), Expect = 2.0, Method: Composition-based stats. Identities = 26/141 (18%), Positives = 39/141 (27%), Gaps = 26/141 (18%) Query: 3 IQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRF-CADTELDVESVY 61 QD K D K+ + R QAL++ I E+ C + Sbjct: 59 PQDGKPDRKVYSITDLGR----QALFEWFQEPARNPTIRDEFSAKLLVCGVHNSEPMQQQ 114 Query: 62 LHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGV--------- 112 L +E ++ G + I R + LR GV Sbjct: 115 LEALIEESHTLM-GHYAELEKI------HFANHKEMDRQSRLDRLTLRRGVHNRQAWIYW 167 Query: 113 -----LELIECHSVPVEVIIS 128 EL + S V I+ Sbjct: 168 AEEVLAELKDMDSTDSNVQIN 188 >gi|283783338|ref|YP_003374092.1| phage capsid family protein [Gardnerella vaginalis 409-05] gi|283441951|gb|ADB14417.1| phage capsid family protein [Gardnerella vaginalis 409-05] Length = 315 Score = 35.8 bits (82), Expect = 2.0, Method: Composition-based stats. Identities = 15/80 (18%), Positives = 32/80 (40%), Gaps = 12/80 (15%) Query: 81 QHIDLLISSCLTEKWSFSRLDMILC---SILRAGVLELIECHSVPVEVIISEYV--CIAH 135 + D I + + K F R+D+ +++R G + + I E++ + Sbjct: 96 KDYDANIITHMPIKDGFKRIDVTDYTLVNLIRLGT---DFTADLDFD--IEEFITSELTK 150 Query: 136 DFFYGDEPKFINAVLDKVSR 155 F + FIN D +++ Sbjct: 151 QFTLSESEAFING--DGITK 168 >gi|15222583|ref|NP_173912.1| ATIPT6; ATP binding / adenylate dimethylallyltransferase/ tRNA isopentenyltransferase [Arabidopsis thaliana] gi|75169133|sp|Q9C6L1|IPT6_ARATH RecName: Full=Adenylate isopentenyltransferase 6, chloroplastic; Short=AtIPT6; AltName: Full=Adenylate dimethylallyltransferase 6; AltName: Full=Cytokinin synthase 6; Flags: Precursor gi|12321506|gb|AAG50809.1|AC079281_11 tRNA isopentenyl transferase, putative [Arabidopsis thaliana] gi|14279064|dbj|BAB59045.1| adenylate isopentenyltransferase [Arabidopsis thaliana] gi|332192498|gb|AEE30619.1| adenylate isopentenyltransferase 6 [Arabidopsis thaliana] Length = 342 Score = 35.8 bits (82), Expect = 2.1, Method: Composition-based stats. Identities = 20/110 (18%), Positives = 35/110 (31%), Gaps = 19/110 (17%) Query: 41 ISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHI----DLLISSCLTEKWS 96 + E++ Y E+D L + + G+ +R + I + W Sbjct: 235 VEEFDRYFRVYPKEMDKGIWDLARKAAY-EETVKGMKERTCRLVKKQKEKIMKLIRGGWE 293 Query: 97 FSRLDMILCSILRAGVLEL---------IECHSVPVEVIISEYVCIAHDF 137 RLD +I+ EL + + I+ E V I F Sbjct: 294 IKRLDAT-AAIM----AELNQSTAKGEGKNGREIWEKHIVDESVEIVKKF 338 >gi|289524256|ref|ZP_06441110.1| Sun protein [Anaerobaculum hydrogeniformans ATCC BAA-1850] gi|289502912|gb|EFD24076.1| Sun protein [Anaerobaculum hydrogeniformans ATCC BAA-1850] Length = 440 Score = 35.8 bits (82), Expect = 2.1, Method: Composition-based stats. Identities = 26/131 (19%), Positives = 44/131 (33%), Gaps = 14/131 (10%) Query: 40 IISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSR 99 I E F + + + +++ M R ++ S L F Sbjct: 10 IWEETRKGLFLSQVLRRFGEDLPEGERKLASTLVYCAMRRYNLWVEILRSFLRR--PFET 67 Query: 100 LDMILCSILRAGVL---ELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVS-- 154 L IL G E+ VP ++ + +V D +NAVL K++ Sbjct: 68 LQAETRDILILGCAGLLEIKHF--VPQSLV-NAFVEATKKKNPADAA-LVNAVLRKIASD 123 Query: 155 ---RKEEIKRS 162 + EE+K S Sbjct: 124 GREKLEELKNS 134 >gi|312173998|emb|CBX82251.1| Ribosomal RNA small subunit methyltransferase B [Erwinia amylovora ATCC BAA-2158] Length = 429 Score = 35.8 bits (82), Expect = 2.2, Method: Composition-based stats. Identities = 17/122 (13%), Positives = 45/122 (36%), Gaps = 12/122 (9%) Query: 32 IIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCL 91 I + +++ + ++ ++ + D + + +GV+ ++ +IS + Sbjct: 10 IAARTIEQVVEQGQS---LSNVLPAAQKCVDDKDAALVQELCYGVLRTLPQLEWVISKLM 66 Query: 92 TEKWSFSRLDMILCSI---LRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINA 148 + + +I + G+ +L+ +P ++E V A IN Sbjct: 67 SCP-----MTGKQRAIHFLIMVGLYQLMFTR-IPPHAALAETVEGAVALKRPQLKGLING 120 Query: 149 VL 150 VL Sbjct: 121 VL 122 >gi|227328919|ref|ZP_03832943.1| 16S rRNA methyltransferase B [Pectobacterium carotovorum subsp. carotovorum WPP14] Length = 429 Score = 35.8 bits (82), Expect = 2.2, Method: Composition-based stats. Identities = 16/97 (16%), Positives = 35/97 (36%), Gaps = 3/97 (3%) Query: 62 LHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSV 121 D + + G++ ++ I + + + L ++ G+ +L + Sbjct: 37 SDKDRALLQELCFGLLRVLPQLEWCIQQLMAK--PLTGKQRTLHYLIMVGIYQLQYTR-I 93 Query: 122 PVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEE 158 P ++E V A IN VL + R++E Sbjct: 94 PPHAALAETVEGAVTLKKPQLKGLINGVLRQFQRQQE 130 >gi|304399258|ref|ZP_07381124.1| sun protein [Pantoea sp. aB] gi|304353184|gb|EFM17565.1| sun protein [Pantoea sp. aB] Length = 433 Score = 35.8 bits (82), Expect = 2.3, Method: Composition-based stats. Identities = 19/102 (18%), Positives = 36/102 (35%), Gaps = 3/102 (2%) Query: 57 VESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELI 116 + D + I GV+ ++ LI + + +L ++ G+ +L Sbjct: 32 AQKKLSDKDSALVQEICFGVLRTLPQLEALIGKLMAR--PLTGKQRVLHYLIMVGLYQLE 89 Query: 117 ECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEE 158 VP ++E V A +N VL + R+ E Sbjct: 90 YTR-VPAHAALAETVAGAEVLKRTSLKGLLNGVLRQFQRQRE 130 >gi|126738334|ref|ZP_01754055.1| ribosomal RNA small subunit methyltransferase B, putative [Roseobacter sp. SK209-2-6] gi|126720831|gb|EBA17536.1| ribosomal RNA small subunit methyltransferase B, putative [Roseobacter sp. SK209-2-6] Length = 432 Score = 35.8 bits (82), Expect = 2.3, Method: Composition-based stats. Identities = 18/106 (16%), Positives = 36/106 (33%), Gaps = 14/106 (13%) Query: 59 SVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIE- 117 + + + + + D ++ L + + + LR G +EL + Sbjct: 47 ERLAPDERARAQRLAAETLRSLERADRILQKHLKKSTPL-----TVHNALRLGTVELCQG 101 Query: 118 ---CHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIK 160 V V I I+ +G +NAVL KV+ + + Sbjct: 102 GAAHGVVNAMVTI-----ISKHRRHGKLKGLVNAVLRKVAEQGPAE 142 >gi|125539478|gb|EAY85873.1| hypothetical protein OsI_07234 [Oryza sativa Indica Group] Length = 464 Score = 35.8 bits (82), Expect = 2.3, Method: Composition-based stats. Identities = 16/90 (17%), Positives = 27/90 (30%), Gaps = 26/90 (28%) Query: 70 RVIIHGVMDRKQHIDLLISSCLTEKW--------SFSRLDMILCSILRAGVLELIECHSV 121 R + GV+ D + S+ W L +I +++R V Sbjct: 166 RGLALGVIVHHSACDGVGSTHFLHTWAAACAGDRKLPELPVIDRTLIR----------DV 215 Query: 122 PVE-----VIISEYVCIAHDFFYGDEPKFI 146 P +E + F D KF+ Sbjct: 216 PDRHDEFAAPTNEAKEL---FKAPDAGKFV 242 >gi|148240736|ref|YP_001226123.1| SNF2 family DNA/RNA helicase [Synechococcus sp. WH 7803] gi|147849275|emb|CAK24826.1| Superfamily II DNA/RNA helicases, SNF2 family [Synechococcus sp. WH 7803] Length = 1070 Score = 35.5 bits (81), Expect = 2.3, Method: Composition-based stats. Identities = 29/172 (16%), Positives = 60/172 (34%), Gaps = 41/172 (23%) Query: 2 TIQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVY 61 + + ++ L+ R +R ++I + G +SE +D + Sbjct: 721 SAKQSQAARDLARTRKGSR-------FRIALTGTPVENRVSELWAL-------MDFLNPS 766 Query: 62 LHVDLEWFRVIIH------GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLEL 115 + + E+FR G M + + + + RL +I+ Sbjct: 767 VLGEEEFFRQRYRMPIERYGDMSSLRDLKSRVGPFI-----LRRL-KTDKAII------- 813 Query: 116 IECHSVPVEVIISEYVCIAHDFFYGDE--PKFINAVLDKVSRKEEIKRSGCV 165 +P +V +SE+V ++ + K + LD ++R KR G V Sbjct: 814 ---SDLPEKVELSEWVGLSKE---QKSLYAKTVEDTLDAIARAPRGKRHGQV 859 >gi|110832990|ref|YP_691849.1| tRNA and rRNA cytosine-C5-methylase [Alcanivorax borkumensis SK2] gi|110646101|emb|CAL15577.1| tRNA and rRNA cytosine-C5-methylase, putative [Alcanivorax borkumensis SK2] Length = 447 Score = 35.5 bits (81), Expect = 2.3, Method: Composition-based stats. Identities = 21/102 (20%), Positives = 37/102 (36%), Gaps = 3/102 (2%) Query: 54 ELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVL 113 E+ + D R I GV + ++ ++ L++ + L AG+ Sbjct: 39 EVLRDFPLQGSDGGQMRDICFGVCRHLRPLNHWLNQQLSK--PLKGSAQPVRLALLAGLY 96 Query: 114 ELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSR 155 EL + P I++ Y + NAVL K S+ Sbjct: 97 EL-WFSNRPAHAIVNAYPQLCRKLKAPWAAGLSNAVLRKASQ 137 >gi|307352529|ref|YP_003893580.1| hypothetical protein Mpet_0368 [Methanoplanus petrolearius DSM 11571] gi|307155762|gb|ADN35142.1| hypothetical protein Mpet_0368 [Methanoplanus petrolearius DSM 11571] Length = 575 Score = 35.5 bits (81), Expect = 2.4, Method: Composition-based stats. Identities = 14/82 (17%), Positives = 30/82 (36%), Gaps = 9/82 (10%) Query: 55 LDVESVYLHVDLEWFRVII---HGV-MDRKQHIDLLISSCLTEKWSFSRLDMILCSILRA 110 ++ + F +I +G+ + R ID ++ L + +A Sbjct: 352 GEIPGELSKAEPVIFDSLIDPENGIEIVRDDEIDSTMTPLLRRPSPLEEISDTE---FKA 408 Query: 111 GVLELIECHSVPVEVI--ISEY 130 G+ E + PV ++ I+E Sbjct: 409 GISEFLGLPPGPVGLVDEINEA 430 >gi|163745468|ref|ZP_02152828.1| rRNA methyltransferase RsmB [Oceanibulbus indolifex HEL-45] gi|161382286|gb|EDQ06695.1| rRNA methyltransferase RsmB [Oceanibulbus indolifex HEL-45] Length = 423 Score = 35.5 bits (81), Expect = 2.5, Method: Composition-based stats. Identities = 26/138 (18%), Positives = 47/138 (34%), Gaps = 19/138 (13%) Query: 18 IARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVM 77 AR +AV Y +D+I ++SE D D + + + Sbjct: 7 QARRSAV---YLLDMILDDEPRLMSELLASGALDKLPPD--------DRARAQRLAQDTL 55 Query: 78 DRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDF 137 + D L+ L + + ++LR G +EL C +++ V + Sbjct: 56 RGLERADRLLQKHLQKAPPL-----TVRNVLRVGTVEL--CQGGAAHGVVNAMVNLVSQH 108 Query: 138 FY-GDEPKFINAVLDKVS 154 NAVL K++ Sbjct: 109 RTLSHLKGLTNAVLRKIA 126 >gi|325849117|ref|ZP_08170609.1| putative ribosomal RNA small subunit methyltransferase B [Anaerococcus hydrogenalis ACS-025-V-Sch4] gi|325480362|gb|EGC83425.1| putative ribosomal RNA small subunit methyltransferase B [Anaerococcus hydrogenalis ACS-025-V-Sch4] Length = 426 Score = 35.5 bits (81), Expect = 2.5, Method: Composition-based stats. Identities = 12/49 (24%), Positives = 19/49 (38%), Gaps = 2/49 (4%) Query: 110 AGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEE 158 G+ + I++E V + Y F+NA+L R EE Sbjct: 77 IGIYNI-HFLDRKNYAIVNELVNLTKKVSY-KSKSFVNAILRSYIRDEE 123 >gi|325577101|ref|ZP_08147585.1| RNA methyltransferase Sun [Haemophilus parainfluenzae ATCC 33392] gi|325160683|gb|EGC72804.1| RNA methyltransferase Sun [Haemophilus parainfluenzae ATCC 33392] Length = 445 Score = 35.5 bits (81), Expect = 2.5, Method: Composition-based stats. Identities = 9/38 (23%), Positives = 14/38 (36%) Query: 121 VPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEE 158 VP + E V +N VL + R++E Sbjct: 102 VPAHAAVDEVVNATKSLKSDSFRGLVNGVLRRFLREKE 139 >gi|258563930|ref|XP_002582710.1| hypothetical protein UREG_07483 [Uncinocarpus reesii 1704] gi|237908217|gb|EEP82618.1| hypothetical protein UREG_07483 [Uncinocarpus reesii 1704] Length = 550 Score = 35.5 bits (81), Expect = 2.8, Method: Composition-based stats. Identities = 14/57 (24%), Positives = 27/57 (47%), Gaps = 1/57 (1%) Query: 32 IIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLIS 88 + G T E++ E F D E D ++FR +++ V+ +K+ I+ L+ Sbjct: 450 LNGKVTEEVVRELVDQGFMVDYAPPSEDDTFARDGKFFRCVVN-VLTKKETIEALVD 505 >gi|262037542|ref|ZP_06011001.1| putative ribosomal RNA small subunit methyltransferase B [Leptotrichia goodfellowii F0264] gi|261748472|gb|EEY35852.1| putative ribosomal RNA small subunit methyltransferase B [Leptotrichia goodfellowii F0264] Length = 442 Score = 35.5 bits (81), Expect = 2.9, Method: Composition-based stats. Identities = 13/54 (24%), Positives = 21/54 (38%), Gaps = 2/54 (3%) Query: 105 CSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEE 158 +LR V +L ++ E V +A F+NA L V R ++ Sbjct: 83 KQLLRISVAQL-FFTEADNAGVLYEAVEVAKIINNHQS-GFVNATLQSVLRNKD 134 >gi|332184460|gb|AEE26714.1| Ribosomal RNA small subunit methyltransferase B [Francisella cf. novicida 3523] Length = 426 Score = 35.5 bits (81), Expect = 3.0, Method: Composition-based stats. Identities = 20/125 (16%), Positives = 47/125 (37%), Gaps = 8/125 (6%) Query: 32 IIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCL 91 I + EI+ Y + + D + +++ + ++ + S L Sbjct: 6 IAAKAILEILDN--KYSLLTLEQKLLSHNLSEQDKSFVKLLCYEFFRHYYSLEKIASLYL 63 Query: 92 TEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLD 151 +K + +I+ +L+ + E+ + P I+E V D K +N +L Sbjct: 64 KQKTKITAKVLIMLGVLQ--IFEVKQ----PYYATINESVSACKDLKIIWAKKLVNGILR 117 Query: 152 KVSRK 156 +++R Sbjct: 118 EITRN 122 >gi|325924335|ref|ZP_08185879.1| ribosomal RNA small subunit methyltransferase RsmB [Xanthomonas gardneri ATCC 19865] gi|325545200|gb|EGD16510.1| ribosomal RNA small subunit methyltransferase RsmB [Xanthomonas gardneri ATCC 19865] Length = 436 Score = 35.1 bits (80), Expect = 3.1, Method: Composition-based stats. Identities = 17/108 (15%), Positives = 35/108 (32%), Gaps = 3/108 (2%) Query: 49 FCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSIL 108 A+ + + D I V+ R+ D+ + L D L ++L Sbjct: 30 LKAELAASLPGLSDPRDRALVEAICFAVLRRRPAYDVALRQWLERPLPPR--DAELKALL 87 Query: 109 RAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRK 156 ++ +P +S V + +NA+L + R+ Sbjct: 88 -MAGFAQLDVLQLPAHAALSATVDACRALGRPRQAGMVNAILRRAQRE 134 >gi|53729217|ref|ZP_00348347.1| COG0144: tRNA and rRNA cytosine-C5-methylases [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|126209024|ref|YP_001054249.1| ribosomal RNA small subunit methyltransferase B [Actinobacillus pleuropneumoniae L20] gi|165976991|ref|YP_001652584.1| SUN protein [Actinobacillus pleuropneumoniae serovar 3 str. JL03] gi|190150891|ref|YP_001969416.1| ribosomal RNA small subunit methyltransferase B [Actinobacillus pleuropneumoniae serovar 7 str. AP76] gi|303252922|ref|ZP_07339079.1| SUN protein [Actinobacillus pleuropneumoniae serovar 2 str. 4226] gi|307248606|ref|ZP_07530620.1| Ribosomal RNA small subunit methyltransferase B [Actinobacillus pleuropneumoniae serovar 2 str. S1536] gi|307250839|ref|ZP_07532767.1| Ribosomal RNA small subunit methyltransferase B [Actinobacillus pleuropneumoniae serovar 4 str. M62] gi|307255464|ref|ZP_07537270.1| Ribosomal RNA small subunit methyltransferase B [Actinobacillus pleuropneumoniae serovar 9 str. CVJ13261] gi|307257633|ref|ZP_07539392.1| Ribosomal RNA small subunit methyltransferase B [Actinobacillus pleuropneumoniae serovar 10 str. D13039] gi|307259916|ref|ZP_07541629.1| Ribosomal RNA small subunit methyltransferase B [Actinobacillus pleuropneumoniae serovar 11 str. 56153] gi|307264244|ref|ZP_07545834.1| Ribosomal RNA small subunit methyltransferase B [Actinobacillus pleuropneumoniae serovar 13 str. N273] gi|126097816|gb|ABN74644.1| ribosomal RNA small subunit methyltransferase B [Actinobacillus pleuropneumoniae serovar 5b str. L20] gi|165877092|gb|ABY70140.1| SUN protein [Actinobacillus pleuropneumoniae serovar 3 str. JL03] gi|189916022|gb|ACE62274.1| ribosomal RNA small subunit methyltransferase B [Actinobacillus pleuropneumoniae serovar 7 str. AP76] gi|302648230|gb|EFL78429.1| SUN protein [Actinobacillus pleuropneumoniae serovar 2 str. 4226] gi|306854817|gb|EFM87006.1| Ribosomal RNA small subunit methyltransferase B [Actinobacillus pleuropneumoniae serovar 2 str. S1536] gi|306857089|gb|EFM89217.1| Ribosomal RNA small subunit methyltransferase B [Actinobacillus pleuropneumoniae serovar 4 str. M62] gi|306861506|gb|EFM93494.1| Ribosomal RNA small subunit methyltransferase B [Actinobacillus pleuropneumoniae serovar 9 str. CVJ13261] gi|306863808|gb|EFM95732.1| Ribosomal RNA small subunit methyltransferase B [Actinobacillus pleuropneumoniae serovar 10 str. D13039] gi|306865944|gb|EFM97819.1| Ribosomal RNA small subunit methyltransferase B [Actinobacillus pleuropneumoniae serovar 11 str. 56153] gi|306870415|gb|EFN02169.1| Ribosomal RNA small subunit methyltransferase B [Actinobacillus pleuropneumoniae serovar 13 str. N273] Length = 432 Score = 35.1 bits (80), Expect = 3.1, Method: Composition-based stats. Identities = 28/155 (18%), Positives = 49/155 (31%), Gaps = 38/155 (24%) Query: 15 RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74 ++ AR A Q + Q+ G S +I E ++ DL + I Sbjct: 2 KKQNARAVAAQIILQVLDQGKSLATLIPE-------------AQAKLEAKDLPLVQEITF 48 Query: 75 GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHS-----------VPV 123 GV ++ +I+ + + G L+ C VP Sbjct: 49 GVCRTLPRLEAVIAQAVEK--PLK------------GKTRLVHCLLLVGLYQLLYMRVPE 94 Query: 124 EVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEE 158 + E V A + IN VL + R+++ Sbjct: 95 FAAVDEVVNAARSLKLDNFKALINGVLRRFLREKD 129 >gi|307246481|ref|ZP_07528553.1| Ribosomal RNA small subunit methyltransferase B [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|306852544|gb|EFM84777.1| Ribosomal RNA small subunit methyltransferase B [Actinobacillus pleuropneumoniae serovar 1 str. 4074] Length = 432 Score = 35.1 bits (80), Expect = 3.2, Method: Composition-based stats. Identities = 28/155 (18%), Positives = 49/155 (31%), Gaps = 38/155 (24%) Query: 15 RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74 ++ AR A Q + Q+ G S +I E ++ DL + I Sbjct: 2 KKQNARAVAAQIILQVLDQGKSLATLIPE-------------AQAKLEAKDLPLVQEITF 48 Query: 75 GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHS-----------VPV 123 GV ++ +I+ + + G L+ C VP Sbjct: 49 GVCRTLPRLEAVIAQAVEK--PLK------------GKTRLVHCLLLVGLYQLLYMRVPE 94 Query: 124 EVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEE 158 + E V A + IN VL + R+++ Sbjct: 95 FAAVDEVVNAARSLKLDNFKALINGVLRRFLREKD 129 >gi|307262046|ref|ZP_07543700.1| Ribosomal RNA small subunit methyltransferase B [Actinobacillus pleuropneumoniae serovar 12 str. 1096] gi|306868225|gb|EFN00048.1| Ribosomal RNA small subunit methyltransferase B [Actinobacillus pleuropneumoniae serovar 12 str. 1096] Length = 432 Score = 35.1 bits (80), Expect = 3.3, Method: Composition-based stats. Identities = 28/155 (18%), Positives = 49/155 (31%), Gaps = 38/155 (24%) Query: 15 RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74 ++ AR A Q + Q+ G S +I E ++ DL + I Sbjct: 2 KKQNARAVAAQIILQVLDQGKSLATLIPE-------------AQAKLEAKDLPLVQEITF 48 Query: 75 GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHS-----------VPV 123 GV ++ +I+ + + G L+ C VP Sbjct: 49 GVCRTLPRLEAVIAQAVEK--PLK------------GKTRLVHCLLLVGLYQLLYMRVPE 94 Query: 124 EVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEE 158 + E V A + IN VL + R+++ Sbjct: 95 FAAVDEVVNAARSLKLDNFKALINGVLRRFLREKD 129 >gi|256544908|ref|ZP_05472279.1| sun protein [Anaerococcus vaginalis ATCC 51170] gi|256399407|gb|EEU13013.1| sun protein [Anaerococcus vaginalis ATCC 51170] Length = 426 Score = 35.1 bits (80), Expect = 3.3, Method: Composition-based stats. Identities = 20/113 (17%), Positives = 46/113 (40%), Gaps = 4/113 (3%) Query: 46 TYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILC 105 +Y+ T++ E D+ + I+GV++ K +++ +++ K + L Sbjct: 15 SYKNEKSTDIINEIAKKVEDISYITKNIYGVLENKLYLEYILAKLSKIKVKKLDKKVKLI 74 Query: 106 SILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEE 158 + G+ + I++E V + + F+NA+L R E+ Sbjct: 75 LL--IGIYNI-HFLDRKNYAIVNELVNLTKKVSF-KSKSFVNAILRSYIRDEK 123 >gi|289209431|ref|YP_003461497.1| sun protein [Thioalkalivibrio sp. K90mix] gi|288945062|gb|ADC72761.1| sun protein [Thioalkalivibrio sp. K90mix] Length = 451 Score = 35.1 bits (80), Expect = 3.4, Method: Composition-based stats. Identities = 17/105 (16%), Positives = 38/105 (36%), Gaps = 3/105 (2%) Query: 65 DLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVE 124 D W + + + + + L++ L + D ++ +L G+ EL+ + Sbjct: 52 DAAWVQALAYTTLRWYPQLSALVNGFLER--PLRKKDAVIGVLLAQGLAELMHFSTRDHA 109 Query: 125 VIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRSGCVSAIT 169 + E +A INAVL + R+++ + Sbjct: 110 -AVRETAELARAIHRPGAVGLINAVLRRAQREQDALEAAVREDPA 153 >gi|120435016|ref|YP_860702.1| two-component system sensor histidine kinase [Gramella forsetii KT0803] gi|117577166|emb|CAL65635.1| two-component system sensor histidine kinase [Gramella forsetii KT0803] Length = 525 Score = 35.1 bits (80), Expect = 3.4, Method: Composition-based stats. Identities = 10/39 (25%), Positives = 20/39 (51%), Gaps = 3/39 (7%) Query: 96 SFSRLDMILCSILRAGVLELIECHSVPVEV---IISEYV 131 SR++ + ILR+ + EL+ + V +I+E + Sbjct: 157 RLSRMEEVEKDILRSAISELVVRLPLHKRVSEEVINELI 195 >gi|254461752|ref|ZP_05075168.1| rRNA methyltransferase RsmB [Rhodobacterales bacterium HTCC2083] gi|206678341|gb|EDZ42828.1| rRNA methyltransferase RsmB [Rhodobacteraceae bacterium HTCC2083] Length = 423 Score = 35.1 bits (80), Expect = 3.4, Method: Composition-based stats. Identities = 16/93 (17%), Positives = 34/93 (36%), Gaps = 8/93 (8%) Query: 65 DLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVE 124 D + + + + +D ++ L + + + ++LR EL C Sbjct: 42 DRARAQRLASETLRSLERVDRIMKPFLRKPPPLA-----VHNVLRIATYEL--CTGGAAH 94 Query: 125 VIISEYV-CIAHDFFYGDEPKFINAVLDKVSRK 156 ++++ V + + NAVL KV K Sbjct: 95 GVVNDAVSSVGANKRTEKLKGLTNAVLRKVVDK 127 >gi|303249608|ref|ZP_07335814.1| SUN protein [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|307253218|ref|ZP_07535093.1| Ribosomal RNA small subunit methyltransferase B [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|302651541|gb|EFL81691.1| SUN protein [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|306859306|gb|EFM91344.1| Ribosomal RNA small subunit methyltransferase B [Actinobacillus pleuropneumoniae serovar 6 str. Femo] Length = 432 Score = 35.1 bits (80), Expect = 3.5, Method: Composition-based stats. Identities = 28/155 (18%), Positives = 49/155 (31%), Gaps = 38/155 (24%) Query: 15 RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74 ++ AR A Q + Q+ G S +I E ++ DL + I Sbjct: 2 KKQNARAVAAQIILQVLDQGKSLATLIPE-------------AQAKLEAKDLPLVQEITF 48 Query: 75 GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHS-----------VPV 123 GV ++ +I+ + + G L+ C VP Sbjct: 49 GVCRTLPRLEAVIAQAVEK--PLK------------GKTRLVHCLLLVGLYQLLYMRVPE 94 Query: 124 EVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEE 158 + E V A + IN VL + R+++ Sbjct: 95 FAAVDEVVNAARSLKLDNFKALINGVLRRFLREKD 129 >gi|67525297|ref|XP_660710.1| hypothetical protein AN3106.2 [Aspergillus nidulans FGSC A4] gi|40744501|gb|EAA63677.1| hypothetical protein AN3106.2 [Aspergillus nidulans FGSC A4] Length = 1679 Score = 35.1 bits (80), Expect = 3.6, Method: Composition-based stats. Identities = 19/102 (18%), Positives = 34/102 (33%), Gaps = 5/102 (4%) Query: 17 GIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGV 76 R ++AL+ + G + E + C D + + F ++G Sbjct: 1579 SATRKRDIEALFPSRMRGNGLEDAWGEVTSASICTDYQSRRLGTRVRGVKSVFPHTVNGT 1638 Query: 77 MDRKQHIDLLISSCLTEKWSFSRLDMILCSILR--AGVLELI 116 + I L W R ++L +LR G E+I Sbjct: 1639 AVAVPRVLAAI---LENGWDAERKVVVLPEVLRPFMGGAEVI 1677 >gi|242011052|ref|XP_002426271.1| GTPase mss1, putative [Pediculus humanus corporis] gi|212510334|gb|EEB13533.1| GTPase mss1, putative [Pediculus humanus corporis] Length = 694 Score = 35.1 bits (80), Expect = 3.8, Method: Composition-based stats. Identities = 16/85 (18%), Positives = 32/85 (37%), Gaps = 5/85 (5%) Query: 25 QALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHID 84 QALYQ++ + +++ + ++ + D II V + Sbjct: 161 QALYQME---GNLSKLYKTWRANLLKNLAHVEAYIDFSE-DENIENDIIENVHKNLTVLK 216 Query: 85 LLISSCLTEKWSFSRL-DMILCSIL 108 I + L++ RL D I +I+ Sbjct: 217 NEIENHLSDGRKGERLRDGIKTAII 241 >gi|303256329|ref|ZP_07342345.1| ribosomal RNA small subunit methyltransferase B [Burkholderiales bacterium 1_1_47] gi|330999024|ref|ZP_08322749.1| ribosomal RNA small subunit methyltransferase B [Parasutterella excrementihominis YIT 11859] gi|302861058|gb|EFL84133.1| ribosomal RNA small subunit methyltransferase B [Burkholderiales bacterium 1_1_47] gi|329575766|gb|EGG57292.1| ribosomal RNA small subunit methyltransferase B [Parasutterella excrementihominis YIT 11859] Length = 434 Score = 34.7 bits (79), Expect = 4.1, Method: Composition-based stats. Identities = 14/64 (21%), Positives = 25/64 (39%), Gaps = 5/64 (7%) Query: 97 FSRLDMIL-CSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYG--DEPKFINAVLDKV 153 SR +++ + L E P V+ +E V A F+NA+L + Sbjct: 65 ISRAPADDVLALIELALGLLSEGKEKPFTVV-NEAVAAAKH-SRKMVKAANFVNAILRRF 122 Query: 154 SRKE 157 R++ Sbjct: 123 GREK 126 >gi|212703769|ref|ZP_03311897.1| hypothetical protein DESPIG_01817 [Desulfovibrio piger ATCC 29098] gi|212672737|gb|EEB33220.1| hypothetical protein DESPIG_01817 [Desulfovibrio piger ATCC 29098] Length = 505 Score = 34.7 bits (79), Expect = 4.1, Method: Composition-based stats. Identities = 16/106 (15%), Positives = 33/106 (31%), Gaps = 3/106 (2%) Query: 50 CADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILR 109 DT E D + +G + + + ++ L + L ++ Sbjct: 67 LEDTARRQEGGLAERDRHLAAELAYGTLRMENRLAFVLGKVLRQPLKLPLPLRRLLAV-- 124 Query: 110 AGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSR 155 L+ +P ++ V +A + K +N L V R Sbjct: 125 -AAYGLLFLDRLPAHAVLHTAVDLARQLYGPGLAKVVNGSLRSVQR 169 >gi|84622205|ref|YP_449577.1| Sun protein [Xanthomonas oryzae pv. oryzae MAFF 311018] gi|188574935|ref|YP_001911864.1| ribosomal RNA small subunit methyltransferase B [Xanthomonas oryzae pv. oryzae PXO99A] gi|84366145|dbj|BAE67303.1| Sun protein [Xanthomonas oryzae pv. oryzae MAFF 311018] gi|188519387|gb|ACD57332.1| ribosomal RNA small subunit methyltransferase B [Xanthomonas oryzae pv. oryzae PXO99A] Length = 437 Score = 34.7 bits (79), Expect = 4.3, Method: Composition-based stats. Identities = 19/108 (17%), Positives = 37/108 (34%), Gaps = 3/108 (2%) Query: 49 FCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSIL 108 A+ + + D I V+ R+ D+ + L D L ++L Sbjct: 31 LKAELAATLPGIGDPRDRALVEAICFAVIRRRPAYDVALRQWLERPLPPR--DAELKALL 88 Query: 109 RAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRK 156 G +L + +P +S V + +NA+L + R+ Sbjct: 89 MVGFAQL-DVLQLPAHAALSATVDACRALGRPRQAGMVNAILRRAQRE 135 >gi|325926148|ref|ZP_08187509.1| ribosomal RNA small subunit methyltransferase RsmB [Xanthomonas perforans 91-118] gi|325543493|gb|EGD14915.1| ribosomal RNA small subunit methyltransferase RsmB [Xanthomonas perforans 91-118] Length = 436 Score = 34.7 bits (79), Expect = 4.4, Method: Composition-based stats. Identities = 19/108 (17%), Positives = 37/108 (34%), Gaps = 3/108 (2%) Query: 49 FCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSIL 108 A+ + + D I V+ R+ D+ + L D L ++L Sbjct: 30 LKAELAATLPGIGDPRDRALVEAICFAVIRRRPAYDIALRQWLERALPPR--DAELKALL 87 Query: 109 RAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRK 156 G +L + +P +S V + +NA+L + R+ Sbjct: 88 MVGFAQL-DVLQLPAHAALSATVDACRALGRPRQAGMVNAILRRAQRE 134 >gi|332519332|ref|ZP_08395799.1| von Willebrand factor type A [Lacinutrix algicola 5H-3-7-4] gi|332045180|gb|EGI81373.1| von Willebrand factor type A [Lacinutrix algicola 5H-3-7-4] Length = 345 Score = 34.7 bits (79), Expect = 4.5, Method: Composition-based stats. Identities = 4/16 (25%), Positives = 9/16 (56%) Query: 126 IISEYVCIAHDFFYGD 141 I+E + +A ++ D Sbjct: 171 AINEAIELAKTYYDDD 186 >gi|78049480|ref|YP_365655.1| ribosomal RNA small subunit methyltransferase B [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|78037910|emb|CAJ25655.1| ribosomal RNA small subunit methyltransferase B [Xanthomonas campestris pv. vesicatoria str. 85-10] Length = 436 Score = 34.7 bits (79), Expect = 4.6, Method: Composition-based stats. Identities = 19/108 (17%), Positives = 37/108 (34%), Gaps = 3/108 (2%) Query: 49 FCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSIL 108 A+ + + D I V+ R+ D+ + L D L ++L Sbjct: 30 LKAELAATLPGIGDPRDRALVEAICFAVIRRRPAYDVALRQWLERALPPR--DAELKALL 87 Query: 109 RAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRK 156 G +L + +P +S V + +NA+L + R+ Sbjct: 88 MVGFAQL-DVLQLPAHAALSATVDACRALGRPRQAGMVNAILRRAQRE 134 >gi|85375086|ref|YP_459148.1| tRNA and rRNA cytosine-C5-methylase [Erythrobacter litoralis HTCC2594] gi|84788169|gb|ABC64351.1| tRNA and rRNA cytosine-C5-methylase [Erythrobacter litoralis HTCC2594] Length = 415 Score = 34.7 bits (79), Expect = 4.7, Method: Composition-based stats. Identities = 24/111 (21%), Positives = 36/111 (32%), Gaps = 20/111 (18%) Query: 19 ARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMD 78 AR AA+Q L ++ ET L V D R I + + Sbjct: 9 ARRAALQML----------DAVLRRGETLEQAEGAALR--QVRSAPDKALARAIANETLR 56 Query: 79 RKQHIDLLISSCLTEKWSFSRL--DMILCSILRAGVLELIECHSVPVEVII 127 D LI S + RL D ++LR + + + P +I Sbjct: 57 WLTDFDALIDSATKQ-----RLPDDAKARTVLRLMLAQWL-RLETPPHAVI 101 >gi|166713736|ref|ZP_02244943.1| Sun protein [Xanthomonas oryzae pv. oryzicola BLS256] Length = 437 Score = 34.7 bits (79), Expect = 4.7, Method: Composition-based stats. Identities = 19/108 (17%), Positives = 37/108 (34%), Gaps = 3/108 (2%) Query: 49 FCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSIL 108 A+ + + D I V+ R+ D+ + L D L ++L Sbjct: 31 LKAELAATLPGIGDPRDRALVEAICFAVIRRRPAYDVALRQWLERPLPPR--DAELKALL 88 Query: 109 RAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRK 156 G +L + +P +S V + +NA+L + R+ Sbjct: 89 MVGFAQL-DVLQLPAHAALSATVDACRALGRPRQAGMVNAILRRAQRE 135 >gi|254486947|ref|ZP_05100152.1| rRNA methyltransferase RsmB [Roseobacter sp. GAI101] gi|214043816|gb|EEB84454.1| rRNA methyltransferase RsmB [Roseobacter sp. GAI101] Length = 423 Score = 34.7 bits (79), Expect = 4.8, Method: Composition-based stats. Identities = 27/142 (19%), Positives = 49/142 (34%), Gaps = 24/142 (16%) Query: 18 IARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVM 77 AR +AV Y +D+I + E A LD D + + + Sbjct: 7 QARRSAV---YLLDMI------LGEERLMSELLAAGVLD---KLPPDDRARAQRLALDTL 54 Query: 78 DRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA--- 134 + D L+ L++ + + LR G +EL C +++ V + Sbjct: 55 RGMERADRLLQKHLSKYPPL-----TVRNALRVGTVEL--CQGGAAHGVVNAMVELVATH 107 Query: 135 HDFFYGDEPKFINAVLDKVSRK 156 + NAVL K++ + Sbjct: 108 KKLGHLK--GLTNAVLRKIAAE 127 >gi|255024990|ref|ZP_05296976.1| hypothetical protein LmonocyFSL_18485 [Listeria monocytogenes FSL J1-208] Length = 26 Score = 34.7 bits (79), Expect = 5.1, Method: Composition-based stats. Identities = 6/26 (23%), Positives = 12/26 (46%) Query: 133 IAHDFFYGDEPKFINAVLDKVSRKEE 158 + KFIN VL ++ +++ Sbjct: 1 MTKIXSDEKSSKFINGVLANIAPEDK 26 >gi|259485944|tpe|CBF83395.1| TPA: beta-1,4-glucosidase/seryl tRNA synthase (Eurofung) [Aspergillus nidulans FGSC A4] Length = 478 Score = 34.3 bits (78), Expect = 5.2, Method: Composition-based stats. Identities = 19/102 (18%), Positives = 34/102 (33%), Gaps = 5/102 (4%) Query: 17 GIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGV 76 R ++AL+ + G + E + C D + + F ++G Sbjct: 378 SATRKRDIEALFPSRMRGNGLEDAWGEVTSASICTDYQSRRLGTRVRGVKSVFPHTVNGT 437 Query: 77 MDRKQHIDLLISSCLTEKWSFSRLDMILCSILR--AGVLELI 116 + I L W R ++L +LR G E+I Sbjct: 438 AVAVPRVLAAI---LENGWDAERKVVVLPEVLRPFMGGAEVI 476 >gi|58580210|ref|YP_199226.1| hypothetical protein XOO0587 [Xanthomonas oryzae pv. oryzae KACC10331] gi|58424804|gb|AAW73841.1| Sun protein [Xanthomonas oryzae pv. oryzae KACC10331] Length = 473 Score = 34.3 bits (78), Expect = 5.3, Method: Composition-based stats. Identities = 19/108 (17%), Positives = 37/108 (34%), Gaps = 3/108 (2%) Query: 49 FCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSIL 108 A+ + + D I V+ R+ D+ + L D L ++L Sbjct: 67 LKAELAATLPGIGDPRDRALVEAICFAVIRRRPAYDVALRQWLERPLPPR--DAELKALL 124 Query: 109 RAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRK 156 G +L + +P +S V + +NA+L + R+ Sbjct: 125 MVGFAQL-DVLQLPAHAALSATVDACRALGRPRQAGMVNAILRRAQRE 171 >gi|83855202|ref|ZP_00948732.1| ribosomal RNA small subunit methyltransferase B, putative [Sulfitobacter sp. NAS-14.1] gi|83843045|gb|EAP82212.1| ribosomal RNA small subunit methyltransferase B, putative [Sulfitobacter sp. NAS-14.1] Length = 406 Score = 34.3 bits (78), Expect = 5.4, Method: Composition-based stats. Identities = 16/101 (15%), Positives = 34/101 (33%), Gaps = 12/101 (11%) Query: 59 SVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIEC 118 D + + + + D L+ L++ + + LR G +EL C Sbjct: 19 DKLPPDDRARAQRLAMDTLRGMERADRLLQKHLSKYPPL-----TVRNALRVGTVEL--C 71 Query: 119 HSVPVEVIISEYVCIA---HDFFYGDEPKFINAVLDKVSRK 156 +++ V + + NAVL K++ + Sbjct: 72 QGGAAHGVVNAMVELVATHKKLGHLK--GLTNAVLRKIAAE 110 >gi|170719272|ref|YP_001746960.1| sun protein [Pseudomonas putida W619] gi|169757275|gb|ACA70591.1| sun protein [Pseudomonas putida W619] Length = 436 Score = 34.3 bits (78), Expect = 5.5, Method: Composition-based stats. Identities = 20/101 (19%), Positives = 36/101 (35%), Gaps = 3/101 (2%) Query: 63 HVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVP 122 D + + G + L + + + F D + ++L G+ +L +P Sbjct: 34 ERDRGLTQDLAFGTARWQPR--LDLLAAQLLQKPFKAADADVQALLLIGLYQLFYTR-IP 90 Query: 123 VEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRSG 163 I E V A +NAVL + R+ E +G Sbjct: 91 AHAAIGETVGCADKLKKPWAKGLLNAVLRRAQREGEALLAG 131 >gi|83941724|ref|ZP_00954186.1| ribosomal RNA small subunit methyltransferase B, putative [Sulfitobacter sp. EE-36] gi|83847544|gb|EAP85419.1| ribosomal RNA small subunit methyltransferase B, putative [Sulfitobacter sp. EE-36] Length = 423 Score = 34.3 bits (78), Expect = 5.5, Method: Composition-based stats. Identities = 16/101 (15%), Positives = 34/101 (33%), Gaps = 12/101 (11%) Query: 59 SVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIEC 118 D + + + + D L+ L++ + + LR G +EL C Sbjct: 36 DKLPPDDRARAQRLAMDTLRGMERADRLLQKHLSKYPPL-----TVRNALRVGTVEL--C 88 Query: 119 HSVPVEVIISEYVCIA---HDFFYGDEPKFINAVLDKVSRK 156 +++ V + + NAVL K++ + Sbjct: 89 QGGAAHGVVNAMVELVATHKKLGHLK--GLTNAVLRKIAAE 127 >gi|308188325|ref|YP_003932456.1| ribosomal RNA small subunit methyltransferase B [Pantoea vagans C9-1] gi|308058835|gb|ADO11007.1| Ribosomal RNA small subunit methyltransferase B [Pantoea vagans C9-1] Length = 433 Score = 34.3 bits (78), Expect = 5.7, Method: Composition-based stats. Identities = 19/102 (18%), Positives = 36/102 (35%), Gaps = 3/102 (2%) Query: 57 VESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELI 116 + D + I GV+ ++ LI + + +L ++ G+ +L Sbjct: 32 AQKKLSDKDSALVQEICFGVLRTLPQLEALIGRLMER--PLTGKQRVLHYLIMVGLYQLE 89 Query: 117 ECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEE 158 VP ++E V A +N VL + R+ E Sbjct: 90 YTR-VPAHAALAETVAGAEVLKRTSLKGLLNGVLRQFQRQRE 130 >gi|322698342|gb|EFY90113.1| nuclear pore complex subunit Nup133 [Metarhizium acridum CQMa 102] Length = 1323 Score = 34.3 bits (78), Expect = 5.9, Method: Composition-based stats. Identities = 22/149 (14%), Positives = 50/149 (33%), Gaps = 34/149 (22%) Query: 18 IARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVM 77 +AR A+Q L + + ++ + ++ V ++ + + Sbjct: 596 VARSNALQRL--MQYLNTIGADLDRQTRWNLLYNAEKMHVAALLWKLHEAFTA---SRTA 650 Query: 78 DRKQHIDLLISSCLT---EKWSFSRLDMILCS-------ILRAGV-----LELIEC---- 118 + K+ I LI + + + + + I R + ++I+ Sbjct: 651 EDKKSIIGLIVEFIHQDQKNNPIASIGEVDRVRHWFVNDIFRLEILVTFAYQVIKVLYAD 710 Query: 119 ---HSVPVEVIISEYVCI-------AHDF 137 V V ++I+E V I AH+F Sbjct: 711 KLLDDVKVNILINEAVEINVTAQAGAHEF 739 >gi|315635055|ref|ZP_07890336.1| RNA methyltransferase Sun [Aggregatibacter segnis ATCC 33393] gi|315476317|gb|EFU67068.1| RNA methyltransferase Sun [Aggregatibacter segnis ATCC 33393] Length = 453 Score = 34.3 bits (78), Expect = 6.1, Method: Composition-based stats. Identities = 7/38 (18%), Positives = 14/38 (36%) Query: 121 VPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEE 158 +P + E V +N VL + R+++ Sbjct: 105 IPAHAAVDEVVNATKSLKSDSFRGLVNGVLRRFLREQD 142 >gi|294056140|ref|YP_003549798.1| Fmu (Sun) domain protein [Coraliomargarita akajimensis DSM 45221] gi|293615473|gb|ADE55628.1| Fmu (Sun) domain protein [Coraliomargarita akajimensis DSM 45221] Length = 421 Score = 34.3 bits (78), Expect = 6.2, Method: Composition-based stats. Identities = 13/81 (16%), Positives = 26/81 (32%), Gaps = 6/81 (7%) Query: 73 IHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVC 132 +G + + L ++ + +IL E+ +++ V Sbjct: 56 FYGAIRHGHRCRAALKPHLRKQPR----PRVE-AILLVAGAEICTEAEKAPKIV-HHAVD 109 Query: 133 IAHDFFYGDEPKFINAVLDKV 153 A E INA+L K+ Sbjct: 110 RAKQLVKSGELGLINALLRKL 130 >gi|240947872|ref|ZP_04752312.1| ribosomal RNA small subunit methyltransferase B [Actinobacillus minor NM305] gi|240297834|gb|EER48270.1| ribosomal RNA small subunit methyltransferase B [Actinobacillus minor NM305] Length = 444 Score = 33.9 bits (77), Expect = 7.1, Method: Composition-based stats. Identities = 32/169 (18%), Positives = 50/169 (29%), Gaps = 42/169 (24%) Query: 1 MTIQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESV 60 M + N+K K + R +A +Q L Q G S +I E +S Sbjct: 1 MKVTKNRKMKKKQNARAVAAHIILQVLDQ----GKSLATLIPE-------------AQSQ 43 Query: 61 YLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHS 120 DL + I GV ++ +I + + G L+ C Sbjct: 44 VESKDLPLVQEIAFGVCRVLPRLENIIKQLVEK--PLK------------GKTRLVHCLL 89 Query: 121 -----------VPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEE 158 VP + E V N VL + R++E Sbjct: 90 LVGLYQLLYMRVPAHAAVDEVVNATKSLKLDSFRALTNGVLRRFLREQE 138 >gi|254509818|ref|ZP_05121885.1| Fmu (Sun) [Rhodobacteraceae bacterium KLH11] gi|221533529|gb|EEE36517.1| Fmu (Sun) [Rhodobacteraceae bacterium KLH11] Length = 419 Score = 33.9 bits (77), Expect = 7.7, Method: Composition-based stats. Identities = 27/144 (18%), Positives = 52/144 (36%), Gaps = 20/144 (13%) Query: 12 LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71 +S+ AR +A+ L QI G E ++ R + D + Sbjct: 1 MSNSATAARRSAIYLLDQILGEGRLLPECLAAGALDRLAPE------------DRARAQR 48 Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEV-IISEY 130 + + + D L++ L + + + + LR G +EL + + V + E Sbjct: 49 LTIETLRGLERADRLLADHLRQTPAL-----TVHNALRLGTVELCQGEAAHGVVNAMVEI 103 Query: 131 VCIAHDFFYGDEPKFINAVLDKVS 154 V + +NAVL K++ Sbjct: 104 VGRSRKHGRLK--GLVNAVLRKIA 125 >gi|330901617|gb|EGH33036.1| amino acid adenylation [Pseudomonas syringae pv. japonica str. M301072PT] Length = 298 Score = 33.9 bits (77), Expect = 7.9, Method: Composition-based stats. Identities = 19/97 (19%), Positives = 37/97 (38%), Gaps = 6/97 (6%) Query: 14 HRRGIARLAAVQALYQ---IDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFR 70 R ++R A Q L+ D S +I +E +R ++ + + D R Sbjct: 145 RSRFVSREGAAQVLFAPTCADAT-LSVEDI--RHEPHRLQEAIRVEAVAPFNLADGPLIR 201 Query: 71 VIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSI 107 + V D + + L + + + WS L L ++ Sbjct: 202 AHLLHVADDRHVLLLTMHHIVADGWSMGVLSQELLAL 238 >gi|330720125|gb|EGG98529.1| Ribosomal RNA small subunit methyltransferase B [gamma proteobacterium IMCC2047] Length = 436 Score = 33.9 bits (77), Expect = 8.1, Method: Composition-based stats. Identities = 21/102 (20%), Positives = 35/102 (34%), Gaps = 3/102 (2%) Query: 58 ESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIE 117 + D + + GV Q ++ I L + D+ + +L LE Sbjct: 33 PEILSSQDQALLQELCFGVCRWYQRLNAQIDMLLDKPLKAKDTDVKVLLLLGLYQLEFTR 92 Query: 118 CHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEI 159 +P ISE V INA+L + R++E Sbjct: 93 ---IPAHAAISETVQACKQLKKASASGLINAILRRSQREKEA 131 Database: nr Posted date: May 22, 2011 12:22 AM Number of letters in database: 999,999,966 Number of sequences in database: 2,987,313 Database: /data/usr2/db/fasta/nr.01 Posted date: May 22, 2011 12:30 AM Number of letters in database: 999,999,796 Number of sequences in database: 2,903,041 Database: /data/usr2/db/fasta/nr.02 Posted date: May 22, 2011 12:36 AM Number of letters in database: 999,999,281 Number of sequences in database: 2,904,016 Database: /data/usr2/db/fasta/nr.03 Posted date: May 22, 2011 12:41 AM Number of letters in database: 999,999,960 Number of sequences in database: 2,935,328 Database: /data/usr2/db/fasta/nr.04 Posted date: May 22, 2011 12:46 AM Number of letters in database: 842,794,627 Number of sequences in database: 2,394,679 Lambda K H 0.312 0.170 0.550 Lambda K H 0.267 0.0518 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 3,784,748,491 Number of Sequences: 14124377 Number of extensions: 186894806 Number of successful extensions: 565402 Number of sequences better than 10.0: 3669 Number of HSP's better than 10.0 without gapping: 4027 Number of HSP's successfully gapped in prelim test: 1519 Number of HSP's that attempted gapping in prelim test: 555177 Number of HSP's gapped (non-prelim): 5874 length of query: 170 length of database: 4,842,793,630 effective HSP length: 129 effective length of query: 41 effective length of database: 3,020,748,997 effective search space: 123850708877 effective search space used: 123850708877 T: 11 A: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (20.6 bits) S2: 76 (33.5 bits)