BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.


Reference for composition-based statistics starting in round 2:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= gi|254780345|ref|YP_003064758.1| transcription antitermination
protein NusB [Candidatus Liberibacter asiaticus str. psy62]
         (170 letters)

Database: nr 
           14,124,377 sequences; 4,842,793,630 total letters

Searching..................................................done


Results from round 1


>gi|254780345|ref|YP_003064758.1| transcription antitermination protein NusB [Candidatus Liberibacter
           asiaticus str. psy62]
 gi|254040022|gb|ACT56818.1| transcription antitermination protein NusB [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 170

 Score =  346 bits (888), Expect = 5e-94,   Method: Compositional matrix adjust.
 Identities = 170/170 (100%), Positives = 170/170 (100%)

Query: 1   MTIQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESV 60
           MTIQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESV
Sbjct: 1   MTIQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESV 60

Query: 61  YLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHS 120
           YLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHS
Sbjct: 61  YLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHS 120

Query: 121 VPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRSGCVSAITQ 170
           VPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRSGCVSAITQ
Sbjct: 121 VPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRSGCVSAITQ 170


>gi|315122231|ref|YP_004062720.1| transcription antitermination protein NusB [Candidatus Liberibacter
           solanacearum CLso-ZC1]
 gi|313495633|gb|ADR52232.1| transcription antitermination protein NusB [Candidatus Liberibacter
           solanacearum CLso-ZC1]
          Length = 170

 Score =  257 bits (656), Expect = 4e-67,   Method: Compositional matrix adjust.
 Identities = 121/170 (71%), Positives = 143/170 (84%)

Query: 1   MTIQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESV 60
           MTIQDNK  +KL+ RRGIAR++AVQALYQIDI+GCS  ++ISEYE +RFCAD ++D +++
Sbjct: 1   MTIQDNKTTVKLALRRGIARISAVQALYQIDIVGCSLVDVISEYEMHRFCADKDIDEDNI 60

Query: 61  YLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHS 120
           Y  VDLEWF  I+HGV+  K+ +D LISSCLTEKWSFSRLD+ILC+ILRAGV ELIECHS
Sbjct: 61  YSQVDLEWFHTIMHGVVKNKELVDSLISSCLTEKWSFSRLDLILCAILRAGVFELIECHS 120

Query: 121 VPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRSGCVSAITQ 170
           VPV VIISEYVCIAHDF YGDEPKF+NAVLDKVSR  E++     SAI Q
Sbjct: 121 VPVRVIISEYVCIAHDFLYGDEPKFVNAVLDKVSRTPEVQSKRSDSAIIQ 170


>gi|222148209|ref|YP_002549166.1| transcription antitermination protein NusB [Agrobacterium vitis S4]
 gi|254772608|sp|B9JV80|NUSB_AGRVS RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|221735197|gb|ACM36160.1| transcription antitermination factor NusB [Agrobacterium vitis S4]
          Length = 160

 Score =  163 bits (413), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 77/156 (49%), Positives = 108/156 (69%), Gaps = 3/156 (1%)

Query: 1   MTIQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESV 60
           MT ++NK  +K +++RG ARLAAVQALYQ+DI G    E+++EYET+R     E+D E+ 
Sbjct: 1   MTTENNKPPVKTANQRGAARLAAVQALYQMDIGGTGVLEVVAEYETHRLG--QEIDGET- 57

Query: 61  YLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHS 120
           YL  D  WFR I+ GV+  +  ID LI   L + WS +R+D  + +ILRAG  EL+E   
Sbjct: 58  YLKADASWFRSIVAGVVRDQTKIDPLIRQALQDDWSLARVDSTVRAILRAGTFELLERKD 117

Query: 121 VPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRK 156
           VP+ VI++EYV IAH FF  DEPK +NAVLD+++++
Sbjct: 118 VPIAVIVTEYVEIAHAFFQEDEPKLVNAVLDRIAKQ 153


>gi|222085516|ref|YP_002544046.1| transcription antitermination factor NusB [Agrobacterium
           radiobacter K84]
 gi|254772607|sp|B9JCY3|NUSB_AGRRK RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|221722964|gb|ACM26120.1| transcription antitermination factor NusB [Agrobacterium
           radiobacter K84]
          Length = 160

 Score =  162 bits (409), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 76/156 (48%), Positives = 108/156 (69%), Gaps = 3/156 (1%)

Query: 1   MTIQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESV 60
           M+ QDN++  K +++RG ARLAAVQALYQ+DI G    E+++EYE +R     ELD ++ 
Sbjct: 1   MSNQDNERPAKTANQRGAARLAAVQALYQMDIGGTGVLEVVAEYEAHRLG--QELDGDT- 57

Query: 61  YLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHS 120
           YL  D  WFR I+ GV+  +  +D LI S L + W+ SRLD  + +ILRAG  E+++   
Sbjct: 58  YLKADASWFRSIVSGVVREQTRLDPLIGSALQDDWALSRLDSTVRAILRAGTFEILDRKD 117

Query: 121 VPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRK 156
           VPV VI++EYV IAH FF  DEPK +NAVLD+++++
Sbjct: 118 VPVAVIVTEYVEIAHAFFDDDEPKLVNAVLDRIAKQ 153


>gi|319408451|emb|CBI82106.1| N utilization substance protein B [Bartonella schoenbuchensis R1]
          Length = 156

 Score =  159 bits (401), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 70/145 (48%), Positives = 104/145 (71%), Gaps = 3/145 (2%)

Query: 12  LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71
           L+++RG+ARLAAVQALYQ+DI+G    EI +EY+ YR   D + D    YL  D +WFR 
Sbjct: 12  LANKRGVARLAAVQALYQMDIVGIGVREIAAEYKAYRLGKDIDGDQ---YLDADFQWFRA 68

Query: 72  IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
           +I GV+  ++ +D ++   L+E+WS SRLD IL +ILRAG+ EL+   ++P  VI+SEYV
Sbjct: 69  VIAGVVQNQKQLDPMLQQKLSEEWSLSRLDSILRAILRAGLWELMNHKNIPTAVIVSEYV 128

Query: 132 CIAHDFFYGDEPKFINAVLDKVSRK 156
            +A  FF GDEP+ +NA+LD+++++
Sbjct: 129 DVAKAFFEGDEPRLVNAILDRIAKE 153


>gi|49475530|ref|YP_033571.1| transcription antitermination protein NusB [Bartonella henselae
           str. Houston-1]
 gi|81647946|sp|Q6G3K8|NUSB_BARHE RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|49238336|emb|CAF27560.1| N utilization substance protein B [Bartonella henselae str.
           Houston-1]
          Length = 158

 Score =  157 bits (398), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 74/152 (48%), Positives = 103/152 (67%), Gaps = 3/152 (1%)

Query: 5   DNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHV 64
           + K   +L+++RG ARLAAVQALYQ+DI+G    E  +EYE YR   D + D    YL  
Sbjct: 5   EGKYSPRLANKRGAARLAAVQALYQMDIVGSGVMETAAEYEAYRLGKDIDGDQ---YLDA 61

Query: 65  DLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVE 124
           D +WF  II GV+  ++ +D +++  L+ +WS SRLD IL +ILRAG+ ELI    VP+ 
Sbjct: 62  DFQWFLAIITGVVKDQKQLDPMLNQQLSAEWSLSRLDSILRAILRAGLWELINRQDVPIA 121

Query: 125 VIISEYVCIAHDFFYGDEPKFINAVLDKVSRK 156
           V++SEYV IA  FF GDEPK +NA+LD +++K
Sbjct: 122 VVMSEYVDIAKAFFEGDEPKLVNAILDSMAKK 153


>gi|319784157|ref|YP_004143633.1| transcription antitermination factor NusB [Mesorhizobium ciceri
           biovar biserrulae WSM1271]
 gi|317170045|gb|ADV13583.1| transcription antitermination factor NusB [Mesorhizobium ciceri
           biovar biserrulae WSM1271]
          Length = 166

 Score =  155 bits (392), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 73/147 (49%), Positives = 101/147 (68%), Gaps = 3/147 (2%)

Query: 10  LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF 69
           ++ +++RG ARLAAVQALYQ+D+ G    EI +EYE +R   + +    ++Y   D +WF
Sbjct: 12  MRHANKRGAARLAAVQALYQMDVAGSGVFEITAEYEAFRLGKEVD---GALYREADAQWF 68

Query: 70  RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISE 129
           R I+ GV++ ++ ID +I   LTE W  SRLD  L +ILRAGV EL++   VPV VI+SE
Sbjct: 69  RAILAGVVENQKTIDPIIRQALTEDWPLSRLDSTLRAILRAGVYELMKREDVPVAVIVSE 128

Query: 130 YVCIAHDFFYGDEPKFINAVLDKVSRK 156
           YV IA  F+  DEPK +NAVLD+VSR+
Sbjct: 129 YVDIAKAFYEEDEPKLVNAVLDRVSRR 155


>gi|240850687|ref|YP_002972087.1| transcription antitermination protein NusB [Bartonella grahamii
           as4aup]
 gi|240267810|gb|ACS51398.1| transcription antitermination protein NusB [Bartonella grahamii
           as4aup]
          Length = 156

 Score =  153 bits (387), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 74/144 (51%), Positives = 98/144 (68%), Gaps = 3/144 (2%)

Query: 13  SHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVI 72
           +++RG ARLAAVQALYQ+DI+G    E  +EYE YR   D + D    YL  D +WF  I
Sbjct: 13  ANKRGAARLAAVQALYQMDIVGSGVMETAAEYEAYRLGKDIDGDQ---YLEADFQWFLAI 69

Query: 73  IHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVC 132
           I GV+  ++ +D L+   L+ +WS SRLD IL +ILRAG+ ELI    VPV V+++EYV 
Sbjct: 70  ITGVVKDQKQLDPLLHQQLSAEWSLSRLDSILRAILRAGLWELINRKDVPVAVVMNEYVD 129

Query: 133 IAHDFFYGDEPKFINAVLDKVSRK 156
           IA  FF GDEPK +NAVLD +++K
Sbjct: 130 IAKAFFEGDEPKLVNAVLDSMAKK 153


>gi|260466838|ref|ZP_05813022.1| NusB antitermination factor [Mesorhizobium opportunistum WSM2075]
 gi|259029340|gb|EEW30632.1| NusB antitermination factor [Mesorhizobium opportunistum WSM2075]
          Length = 166

 Score =  153 bits (387), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 73/144 (50%), Positives = 99/144 (68%), Gaps = 3/144 (2%)

Query: 13  SHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVI 72
           +++RG ARLAAVQALYQ+D+ G    EI +EYE +R   + +    ++Y   D +WFR I
Sbjct: 15  ANKRGAARLAAVQALYQMDVAGSGVFEITAEYEAFRLGKEVD---GALYREADAQWFRAI 71

Query: 73  IHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVC 132
           + GV++ ++ ID +I   LTE W  SRLD  L +ILRAGV EL++   VPV VI+SEYV 
Sbjct: 72  LTGVVEDQKTIDPIIRQSLTEDWPLSRLDSTLRAILRAGVYELMKREDVPVAVIVSEYVD 131

Query: 133 IAHDFFYGDEPKFINAVLDKVSRK 156
           IA  F+  DEPK +NAVLD+VSR+
Sbjct: 132 IAKAFYEEDEPKLVNAVLDRVSRR 155


>gi|163759209|ref|ZP_02166295.1| transcription antitermination protein NusB [Hoeflea phototrophica
           DFL-43]
 gi|162283613|gb|EDQ33898.1| transcription antitermination protein NusB [Hoeflea phototrophica
           DFL-43]
          Length = 164

 Score =  153 bits (386), Expect = 9e-36,   Method: Compositional matrix adjust.
 Identities = 77/167 (46%), Positives = 108/167 (64%), Gaps = 7/167 (4%)

Query: 1   MTIQDNKKD-LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVES 59
           MT + N +  +K +++RG ARLAAVQALYQ+DI G    E+++EYE +R     E+D E 
Sbjct: 1   MTTEQNPEPAVKTANQRGAARLAAVQALYQMDIGGAGVLEVVAEYEAHRLG--HEIDGEQ 58

Query: 60  VYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECH 119
            Y   D  WF+ ++ GV++ ++ +D +I S LTE W  SRLD  L +ILRAG  EL    
Sbjct: 59  -YRPADAAWFKAVVSGVVENQRALDPVIRSSLTEDWPLSRLDATLRAILRAGAWELSSKK 117

Query: 120 SVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRK---EEIKRSG 163
            VPV VI++EYV +A  FF  DEPK +NAVLD+++RK   E+  + G
Sbjct: 118 DVPVAVIVTEYVDVARAFFEEDEPKIVNAVLDRLARKYRAEQTPKQG 164


>gi|227821538|ref|YP_002825508.1| transcription antitermination protein NusB [Sinorhizobium fredii
           NGR234]
 gi|254772651|sp|C3M9I9|NUSB_RHISN RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|227340537|gb|ACP24755.1| N utilization substance protein B [Sinorhizobium fredii NGR234]
          Length = 160

 Score =  152 bits (385), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 75/156 (48%), Positives = 106/156 (67%), Gaps = 3/156 (1%)

Query: 1   MTIQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESV 60
           MT   + + LK +++RG ARLAAVQALYQ++I G    EI++E+E +R     ELD E+ 
Sbjct: 1   MTNTPSDQPLKQANQRGAARLAAVQALYQMEIGGTGVLEIVAEFEAHRLG--QELDGET- 57

Query: 61  YLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHS 120
           YL  D  WFR I+ GV+  ++ +D LI S L + W+ SRLD  + +ILRAG  EL+E   
Sbjct: 58  YLKADASWFRSIVSGVVRDQRKLDPLIGSALQDDWALSRLDSTVRAILRAGTFELLERKD 117

Query: 121 VPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRK 156
           VPV VI++EYV IA  FF  +EPK +NAVLD+++++
Sbjct: 118 VPVAVIVTEYVEIAKAFFEDEEPKLVNAVLDRIAKQ 153


>gi|319898989|ref|YP_004159082.1| N utilization substance protein B [Bartonella clarridgeiae 73]
 gi|319402953|emb|CBI76504.1| N utilization substance protein B [Bartonella clarridgeiae 73]
          Length = 156

 Score =  152 bits (385), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 79/156 (50%), Positives = 106/156 (67%), Gaps = 5/156 (3%)

Query: 6   NKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVD 65
           +K  L+L+++RG ARLAAVQALYQ+DIIG    EII+EYE YR   + + D    YL  D
Sbjct: 6   SKDSLRLANKRGAARLAAVQALYQMDIIGTGVIEIIAEYEAYRLGKNIDGDQ---YLDAD 62

Query: 66  LEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEV 125
            +WF  II GV+  ++ +D ++   L+E+W+ SRLD  L +ILRAG+ ELI    VPV V
Sbjct: 63  FQWFCSIIVGVVKDQKQLDPMLHQKLSEEWALSRLDSTLRAILRAGLWELINRKDVPVAV 122

Query: 126 IISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKR 161
           II+EYV IA  FF  DEP+ +NAVLD +++  EI R
Sbjct: 123 IINEYVDIAKAFFESDEPRLVNAVLDNIAK--EIGR 156


>gi|13476941|ref|NP_108511.1| transcription antitermination protein NusB [Mesorhizobium loti
           MAFF303099]
 gi|22095963|sp|Q983A9|NUSB_RHILO RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|14027704|dbj|BAB54297.1| N-utilization substance protein B [Mesorhizobium loti MAFF303099]
          Length = 155

 Score =  152 bits (383), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 72/147 (48%), Positives = 101/147 (68%), Gaps = 3/147 (2%)

Query: 10  LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF 69
           ++ +++RG ARLAAVQALYQ+D+ G    EI +EYE +R   + +    ++Y   D +WF
Sbjct: 1   MRHANKRGAARLAAVQALYQMDVAGSGVFEITAEYEAFRLGKEVD---GALYREADAQWF 57

Query: 70  RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISE 129
           R I+ GV++ ++ ID +I   LT+ W  SRLD  L +ILRAGV EL++   VPV VI+SE
Sbjct: 58  RAILTGVVEDQKTIDPVIRQALTDDWPLSRLDSTLRAILRAGVYELMKREDVPVAVIVSE 117

Query: 130 YVCIAHDFFYGDEPKFINAVLDKVSRK 156
           YV IA  F+  DEPK +NAVLD+VSR+
Sbjct: 118 YVDIAKAFYEEDEPKLVNAVLDRVSRR 144


>gi|150396046|ref|YP_001326513.1| transcription antitermination protein NusB [Sinorhizobium medicae
           WSM419]
 gi|166215721|sp|A6U7P8|NUSB_SINMW RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|150027561|gb|ABR59678.1| NusB antitermination factor [Sinorhizobium medicae WSM419]
          Length = 160

 Score =  151 bits (382), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 74/156 (47%), Positives = 105/156 (67%), Gaps = 3/156 (1%)

Query: 1   MTIQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESV 60
           MT   + + LK  ++RG ARLAAVQALYQ+D+ G    EI++EYE +R     ELD ++ 
Sbjct: 1   MTNTPSDQPLKQVNQRGAARLAAVQALYQMDVGGTGVLEIVAEYEEHRLG--KELDGDT- 57

Query: 61  YLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHS 120
           YL  D  WFR I+ GV+  ++ +D LI S L + W+ SRLD  + +ILRAG  E++E   
Sbjct: 58  YLRADASWFRSIVAGVVRDQRKLDPLIGSALQDDWALSRLDSTVRAILRAGTFEILERKD 117

Query: 121 VPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRK 156
           VPV VI++EYV IA  FF  +EPK +NAVLD+++++
Sbjct: 118 VPVPVIVTEYVEIAKAFFQDEEPKLVNAVLDRIAKQ 153


>gi|15964969|ref|NP_385322.1| transcription antitermination protein NusB [Sinorhizobium meliloti
           1021]
 gi|307301040|ref|ZP_07580809.1| NusB antitermination factor [Sinorhizobium meliloti BL225C]
 gi|307317774|ref|ZP_07597212.1| NusB antitermination factor [Sinorhizobium meliloti AK83]
 gi|22095960|sp|Q92QT9|NUSB_RHIME RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|15074148|emb|CAC45795.1| Putative N utilization substance protein B [Sinorhizobium meliloti
           1021]
 gi|306896536|gb|EFN27284.1| NusB antitermination factor [Sinorhizobium meliloti AK83]
 gi|306903995|gb|EFN34581.1| NusB antitermination factor [Sinorhizobium meliloti BL225C]
          Length = 160

 Score =  151 bits (382), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 74/156 (47%), Positives = 105/156 (67%), Gaps = 3/156 (1%)

Query: 1   MTIQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESV 60
           MT   + + LK  ++RG ARLAAVQALYQ+D+ G    EI++EYE +R     ELD ++ 
Sbjct: 1   MTNTPSDQPLKQVNQRGAARLAAVQALYQMDVGGTGVLEIVAEYEEHRLG--KELDGDT- 57

Query: 61  YLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHS 120
           YL  D  WFR I+ GV+  ++ +D LI S L + W+ SRLD  + +ILRAG  E++E   
Sbjct: 58  YLRADASWFRSIVAGVVRDQRKLDPLIGSALQDDWALSRLDSTVRAILRAGTFEILERKD 117

Query: 121 VPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRK 156
           VPV VI++EYV IA  FF  +EPK +NAVLD+++++
Sbjct: 118 VPVPVIVTEYVEIAKAFFQDEEPKLVNAVLDRIAKQ 153


>gi|190891211|ref|YP_001977753.1| transcription antitermination protein B [Rhizobium etli CIAT 652]
 gi|218514737|ref|ZP_03511577.1| transcription antitermination protein NusB [Rhizobium etli 8C-3]
 gi|238692516|sp|B3PVD4|NUSB_RHIE6 RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|190696490|gb|ACE90575.1| transcription antitermination protein B [Rhizobium etli CIAT 652]
          Length = 160

 Score =  151 bits (382), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 72/156 (46%), Positives = 107/156 (68%), Gaps = 3/156 (1%)

Query: 1   MTIQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESV 60
           M+ +  ++ +K +++RG ARLAAVQALYQ+D+ G    EI++EYE +R     E+D  + 
Sbjct: 1   MSDEKTERPVKTANQRGAARLAAVQALYQMDVGGTGVLEIVAEYEAHRLG--QEID-GAT 57

Query: 61  YLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHS 120
           YL  D  WFR I+ GV+  +  +D LI++ L + W+ SRLD  + +ILRAGV EL++   
Sbjct: 58  YLKADAGWFRSIVSGVVRDQVRLDPLIAAALQDDWALSRLDSTVRAILRAGVFELLDRKD 117

Query: 121 VPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRK 156
           VPV VI++EYV IA  FF  DEPK +NAVLD+++++
Sbjct: 118 VPVAVIVTEYVEIAQAFFDDDEPKLVNAVLDRIAKQ 153


>gi|327191850|gb|EGE58847.1| transcription antitermination protein B [Rhizobium etli CNPAF512]
          Length = 160

 Score =  151 bits (382), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 72/156 (46%), Positives = 107/156 (68%), Gaps = 3/156 (1%)

Query: 1   MTIQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESV 60
           M+ +  ++ +K +++RG ARLAAVQALYQ+D+ G    EI++EYE +R     E+D  + 
Sbjct: 1   MSDEKTERPVKTANQRGAARLAAVQALYQMDVGGTGVLEIVAEYEAHRLG--QEID-GAT 57

Query: 61  YLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHS 120
           YL  D  WFR I+ GV+  +  +D LI++ L + W+ SRLD  + +ILRAGV EL++   
Sbjct: 58  YLKADAGWFRSIVSGVVRDQVRLDPLIAAALQDDWALSRLDSTVRAILRAGVFELLDRKD 117

Query: 121 VPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRK 156
           VPV VI++EYV IA  FF  DEPK +NAVLD+++++
Sbjct: 118 VPVAVIVTEYVEIAQAFFDDDEPKLVNAVLDRIAKQ 153


>gi|163868463|ref|YP_001609672.1| transcription antitermination protein NusB [Bartonella tribocorum
           CIP 105476]
 gi|189035879|sp|A9IVB9|NUSB_BART1 RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|161018119|emb|CAK01677.1| N utilization substance protein B [Bartonella tribocorum CIP
           105476]
          Length = 156

 Score =  151 bits (381), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 73/144 (50%), Positives = 97/144 (67%), Gaps = 3/144 (2%)

Query: 13  SHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVI 72
           +++RG ARLAAVQALYQ+DI+G    E  +EYE YR   D + D    YL  D +WF  I
Sbjct: 13  ANKRGAARLAAVQALYQMDIVGSGVMETAAEYEAYRLGKDIDGDQ---YLDADFQWFLAI 69

Query: 73  IHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVC 132
           I GV+  ++ +D L+   L+ +WS SRLD IL +ILRA + ELI    VPV V+++EYV 
Sbjct: 70  ITGVVQDQKQLDPLLHQQLSAEWSLSRLDSILRAILRAALWELINRKDVPVAVVVNEYVD 129

Query: 133 IAHDFFYGDEPKFINAVLDKVSRK 156
           IA  FF GDEPK +NAVLD +++K
Sbjct: 130 IAKAFFEGDEPKLVNAVLDSMAKK 153


>gi|319404314|emb|CBI77907.1| N utilization substance protein B [Bartonella rochalimae ATCC
           BAA-1498]
          Length = 156

 Score =  151 bits (381), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 69/151 (45%), Positives = 104/151 (68%), Gaps = 3/151 (1%)

Query: 6   NKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVD 65
            K  L+L+++RG ARLAAVQALYQ+D++G    E+I+EY+ YR   D +    + YL  D
Sbjct: 6   GKDSLRLANKRGAARLAAVQALYQMDMVGIGAMEVIAEYKAYRLGKDID---GNQYLDAD 62

Query: 66  LEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEV 125
            +WFR II GV+  ++ +D ++   L+E+W+ SRLD  L +ILRAG+ ELI    +P+ V
Sbjct: 63  FQWFRSIIVGVVRDQKQLDPMLHQQLSEEWALSRLDSTLRAILRAGLWELINRKGMPIAV 122

Query: 126 IISEYVCIAHDFFYGDEPKFINAVLDKVSRK 156
           I++EY+ IA  FF  DEP+ +NAVLD ++++
Sbjct: 123 ILNEYIDIAKAFFDNDEPRLVNAVLDSIAKE 153


>gi|325292546|ref|YP_004278410.1| transcription antitermination protein NusB [Agrobacterium sp.
           H13-3]
 gi|325060399|gb|ADY64090.1| transcription antitermination protein NusB [Agrobacterium sp.
           H13-3]
          Length = 165

 Score =  151 bits (381), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 73/160 (45%), Positives = 103/160 (64%), Gaps = 5/160 (3%)

Query: 4   QDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLH 63
           +  +  +K +++RG ARLAAVQALYQ+D+ G    E+++EYE +R   + + D    YL 
Sbjct: 9   EPRQPSVKPANQRGAARLAAVQALYQMDVGGTGVMEVVAEYEAHRLGQEVDGDT---YLK 65

Query: 64  VDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPV 123
            D  WFR I+ GV+  +  ID L+ S L E W  SRLD  + +ILRAG  E++E   VPV
Sbjct: 66  ADPSWFRSIVSGVVRDQTKIDPLVRSALLEDWPLSRLDATVRAILRAGAFEILERKDVPV 125

Query: 124 EVIISEYVCIAHDFFYGDEPKFINAVLDKVSR--KEEIKR 161
            VI++EYV IA  FF  DEPK +NAVLD++++  + E KR
Sbjct: 126 AVIVTEYVEIARAFFEHDEPKLVNAVLDRIAKQVRGEAKR 165


>gi|159184647|ref|NP_354190.2| transcription antitermination protein NusB [Agrobacterium
           tumefaciens str. C58]
 gi|22095943|sp|Q8UG69|NUSB_AGRT5 RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|159139945|gb|AAK86975.2| Putative transcription antitermination protein NusB [Agrobacterium
           tumefaciens str. C58]
          Length = 165

 Score =  150 bits (380), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 73/160 (45%), Positives = 103/160 (64%), Gaps = 5/160 (3%)

Query: 4   QDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLH 63
           +  +  +K +++RG ARLAAVQALYQ+D+ G    E+++EYE +R   + + D    YL 
Sbjct: 9   EPRQPSVKPANQRGAARLAAVQALYQMDVGGTGVMEVVAEYEAHRLGQEVDGDT---YLK 65

Query: 64  VDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPV 123
            D  WFR I+ GV+  +  ID L+ S L E W  SRLD  + +ILRAG  E++E   VPV
Sbjct: 66  ADPSWFRSIVSGVVRDQTKIDPLVRSALLEDWPLSRLDATVRAILRAGTFEILERKDVPV 125

Query: 124 EVIISEYVCIAHDFFYGDEPKFINAVLDKVSR--KEEIKR 161
            VI++EYV IA  FF  DEPK +NAVLD++++  + E KR
Sbjct: 126 AVIVTEYVEIARAFFEHDEPKLVNAVLDRIAKQVRGEAKR 165


>gi|319405757|emb|CBI79380.1| N utilization substance protein B [Bartonella sp. AR 15-3]
          Length = 156

 Score =  150 bits (379), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 72/151 (47%), Positives = 103/151 (68%), Gaps = 3/151 (1%)

Query: 6   NKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVD 65
            K  L L+++RG ARLAAVQALYQ+DI+G    E+I+EY+ YR   D +    S YL  D
Sbjct: 6   GKDSLILANKRGAARLAAVQALYQMDIVGIGVREVIAEYKAYRLGKDID---GSQYLDAD 62

Query: 66  LEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEV 125
            +WFR I+ GV+  ++ +D ++   L+E+W+ SRLD  L +ILRAG+ ELI    VPV V
Sbjct: 63  FQWFRSIVVGVVKDQKQLDPMLHQQLSEEWALSRLDSTLRAILRAGLWELINRKDVPVAV 122

Query: 126 IISEYVCIAHDFFYGDEPKFINAVLDKVSRK 156
           I++EYV IA  FF  +EP+ +NAVLD ++++
Sbjct: 123 IMNEYVDIAKAFFESNEPRLVNAVLDSIAKE 153


>gi|209548794|ref|YP_002280711.1| transcription antitermination protein NusB [Rhizobium leguminosarum
           bv. trifolii WSM2304]
 gi|238055477|sp|B5ZXV2|NUSB_RHILW RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|209534550|gb|ACI54485.1| NusB antitermination factor [Rhizobium leguminosarum bv. trifolii
           WSM2304]
          Length = 160

 Score =  150 bits (379), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 72/156 (46%), Positives = 104/156 (66%), Gaps = 3/156 (1%)

Query: 1   MTIQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESV 60
           M     ++ +K +++RG ARLAAVQALYQ+D+ G    EI++EYE +R     ELD  + 
Sbjct: 1   MNDDKTERPVKTANQRGAARLAAVQALYQMDVGGTGVLEIVAEYEAHRLG--QELD-GAT 57

Query: 61  YLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHS 120
           YL  D  WFR I+ GV+  +  +D LI++ L + W+ SRLD  + +ILRAGV E+ +   
Sbjct: 58  YLKADAGWFRSIVSGVVRDQTRLDPLIAAALQDDWALSRLDSTVRAILRAGVFEITDRKD 117

Query: 121 VPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRK 156
           VPV VI++EYV IA  FF  DEPK +NAVLD+++++
Sbjct: 118 VPVAVIVTEYVEIAQAFFDDDEPKLVNAVLDRIAKQ 153


>gi|241204015|ref|YP_002975111.1| transcription antitermination protein NusB [Rhizobium leguminosarum
           bv. trifolii WSM1325]
 gi|240857905|gb|ACS55572.1| NusB antitermination factor [Rhizobium leguminosarum bv. trifolii
           WSM1325]
          Length = 160

 Score =  150 bits (379), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 72/156 (46%), Positives = 105/156 (67%), Gaps = 3/156 (1%)

Query: 1   MTIQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESV 60
           M     ++ +K +++RG ARLAAVQALYQ+D+ G    EI++EYE +R     ELD  + 
Sbjct: 1   MNDDKTERPVKTANQRGAARLAAVQALYQMDVGGTGVLEIVAEYEAHRLG--QELD-GAT 57

Query: 61  YLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHS 120
           YL  D+ WFR I+ GV+  +  +D LI++ L + W+ SRLD  + +ILRAGV E+ +   
Sbjct: 58  YLKADVAWFRSIVSGVVRDQVRLDPLIAAALQDDWALSRLDSTVRAILRAGVFEITDRKD 117

Query: 121 VPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRK 156
           VPV VI++EYV IA  FF  DEPK +NAVLD+++++
Sbjct: 118 VPVAVIVTEYVEIAQAFFDDDEPKLVNAVLDRIAKQ 153


>gi|116251399|ref|YP_767237.1| transcription antitermination protein NusB [Rhizobium leguminosarum
           bv. viciae 3841]
 gi|119390806|sp|Q1MIT2|NUSB_RHIL3 RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|115256047|emb|CAK07128.1| putative N utilization substance protein B [Rhizobium leguminosarum
           bv. viciae 3841]
          Length = 160

 Score =  150 bits (378), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 72/156 (46%), Positives = 105/156 (67%), Gaps = 3/156 (1%)

Query: 1   MTIQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESV 60
           M     ++ +K +++RG ARLAAVQALYQ+D+ G    EI++EYE +R     E+D E+ 
Sbjct: 1   MNDDKTERPVKTANQRGAARLAAVQALYQMDVGGTGVLEIVAEYEAHRLG--QEIDGET- 57

Query: 61  YLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHS 120
           YL  D  WFR I+ GV+  +  +D LI++ L + W+ SRLD  + +ILRAGV E+ +   
Sbjct: 58  YLKADAAWFRSIVSGVVRDQVRLDPLIAAALQDDWALSRLDSTVRAILRAGVFEITDRKD 117

Query: 121 VPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRK 156
           VPV VI++EYV IA  FF  DEPK +NAVLD+++++
Sbjct: 118 VPVAVIVTEYVEIAQAFFDDDEPKLVNAVLDRIAKQ 153


>gi|218682018|ref|ZP_03529619.1| transcription antitermination protein NusB [Rhizobium etli CIAT
           894]
          Length = 160

 Score =  150 bits (378), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 72/156 (46%), Positives = 104/156 (66%), Gaps = 3/156 (1%)

Query: 1   MTIQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESV 60
           M     ++ +K +++RG ARLAAVQALYQ+D+ G    EI++EYE +R     ELD  + 
Sbjct: 1   MNDDKTERPVKTANQRGAARLAAVQALYQMDVGGTGVLEIVAEYEAHRLG--QELD-GAT 57

Query: 61  YLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHS 120
           YL  D  WFR I+ GV+  +  +D LI++ L + W+ SRLD  + +ILRAGV E+ +   
Sbjct: 58  YLKADAAWFRSIVSGVVRDQVRLDPLIAAALQDDWALSRLDSTVRAILRAGVFEITDRKD 117

Query: 121 VPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRK 156
           VPV VI++EYV IA  FF  DEPK +NAVLD+++++
Sbjct: 118 VPVAVIVTEYVEIAQAFFEDDEPKLVNAVLDRIAKQ 153


>gi|121602835|ref|YP_988938.1| transcription antitermination protein NusB [Bartonella
           bacilliformis KC583]
 gi|120615012|gb|ABM45613.1| transcription antitermination factor NusB [Bartonella bacilliformis
           KC583]
          Length = 154

 Score =  149 bits (376), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 74/145 (51%), Positives = 96/145 (66%), Gaps = 3/145 (2%)

Query: 12  LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71
           L ++RG ARLAAVQALYQ+DI+G    E  +EYE YR   + + D    YL  D +WFR 
Sbjct: 10  LVNKRGAARLAAVQALYQMDIVGTGVMETAAEYEAYRLGKEIDGDQ---YLDADFQWFRA 66

Query: 72  IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
           II GV+  ++ +D ++   L+E+WS SRLD IL +ILRAG+ ELI    VPV VII+EYV
Sbjct: 67  IIAGVVRDQKKLDPMLHQQLSEEWSLSRLDSILRAILRAGLWELINRKEVPVAVIINEYV 126

Query: 132 CIAHDFFYGDEPKFINAVLDKVSRK 156
            IA  FF   EPK +NAVLD  ++ 
Sbjct: 127 DIAKAFFEDGEPKLVNAVLDNTAKN 151


>gi|49474164|ref|YP_032206.1| transcription antitermination protein NusB [Bartonella quintana
           str. Toulouse]
 gi|81647100|sp|Q6G004|NUSB_BARQU RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|49239668|emb|CAF26039.1| N utilization substance protein B [Bartonella quintana str.
           Toulouse]
          Length = 156

 Score =  149 bits (375), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 70/146 (47%), Positives = 99/146 (67%), Gaps = 3/146 (2%)

Query: 11  KLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFR 70
           +L+++RG ARLAAVQALYQ+DI+G    E  +EYE Y    + +    + YL  D +WF 
Sbjct: 11  RLANKRGAARLAAVQALYQMDIVGSGVMETAAEYEAYHLEKNID---GNQYLDADFQWFL 67

Query: 71  VIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEY 130
            II GV+  ++ +D ++   L+ +WS SRLD IL +ILRAG+ ELI    VP+ V+++EY
Sbjct: 68  AIITGVVKDQKQLDPMLHQQLSAEWSLSRLDSILRAILRAGLWELINRQDVPIAVVMNEY 127

Query: 131 VCIAHDFFYGDEPKFINAVLDKVSRK 156
           V IA  FF GDEPK +NAVLD +++K
Sbjct: 128 VDIAKAFFEGDEPKLVNAVLDSMAKK 153


>gi|86357164|ref|YP_469056.1| transcription antitermination protein NusB [Rhizobium etli CFN 42]
 gi|119390805|sp|Q2KA07|NUSB_RHIEC RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|86281266|gb|ABC90329.1| transcription antitermination protein B [Rhizobium etli CFN 42]
          Length = 160

 Score =  148 bits (373), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 72/156 (46%), Positives = 104/156 (66%), Gaps = 3/156 (1%)

Query: 1   MTIQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESV 60
           M     ++ +K +++RG ARLAAVQALYQ+D+ G    EI++EYE +R     E+D  + 
Sbjct: 1   MNDDKTERPVKTANQRGAARLAAVQALYQMDVGGTGVLEIVAEYEAHRLG--QEID-GAT 57

Query: 61  YLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHS 120
           YL  D  WFR I+ GV+  +  +D LI+  L + W+ SRLD  + +ILRAGV EL++   
Sbjct: 58  YLKADAGWFRSIVSGVVRDQVRLDPLIAVALQDDWALSRLDSTVRAILRAGVFELLDRKD 117

Query: 121 VPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRK 156
           VPV VI++EYV IA  FF  DEPK +NAVLD+++++
Sbjct: 118 VPVAVIVTEYVEIARAFFDDDEPKLVNAVLDRIAKQ 153


>gi|153009852|ref|YP_001371067.1| transcription antitermination protein NusB [Ochrobactrum anthropi
           ATCC 49188]
 gi|166215706|sp|A6X1Y4|NUSB_OCHA4 RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|151561740|gb|ABS15238.1| NusB antitermination factor [Ochrobactrum anthropi ATCC 49188]
          Length = 168

 Score =  147 bits (372), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 68/144 (47%), Positives = 95/144 (65%), Gaps = 3/144 (2%)

Query: 11  KLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFR 70
           + +++RG+ARLAAVQALYQ+D+ G    E+++EYE +R   + +    + YL  D +WFR
Sbjct: 15  RTANKRGVARLAAVQALYQMDVAGTGVLEVVAEYEAFRLGKEVD---GTQYLDADPQWFR 71

Query: 71  VIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEY 130
            I+ GV+D +  +D +I   LTE W  SRLD  L +ILRAG  EL     VP  VI+SEY
Sbjct: 72  AIVAGVVDEQLKLDPMIHQALTEDWPLSRLDSTLRAILRAGAWELQTRKDVPTAVIVSEY 131

Query: 131 VCIAHDFFYGDEPKFINAVLDKVS 154
           V IA  F+  DEPK +NAVLD+++
Sbjct: 132 VDIAKAFYTEDEPKLVNAVLDRLA 155


>gi|239831595|ref|ZP_04679924.1| transcription antitermination factor NusB [Ochrobactrum intermedium
           LMG 3301]
 gi|239823862|gb|EEQ95430.1| transcription antitermination factor NusB [Ochrobactrum intermedium
           LMG 3301]
          Length = 168

 Score =  147 bits (371), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 67/144 (46%), Positives = 96/144 (66%), Gaps = 3/144 (2%)

Query: 11  KLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFR 70
           +++++RG+ARLAAVQALYQ+D+ G    E+++EYE +R   + +    + YL  D +WFR
Sbjct: 15  RMANKRGVARLAAVQALYQMDVAGTGVLEVVAEYEAFRLGKEVD---GTQYLDADPQWFR 71

Query: 71  VIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEY 130
            I+ GV+D +  +D +I   LTE W  SRLD  L +ILRAG  EL     VP  VI+SEY
Sbjct: 72  AIVAGVVDEQLKLDPMIHQALTEDWPLSRLDSTLRAILRAGAWELQTRKDVPTAVIVSEY 131

Query: 131 VCIAHDFFYGDEPKFINAVLDKVS 154
           V IA  F+  +EPK +NAVLD+++
Sbjct: 132 VDIAKAFYTEEEPKLVNAVLDRLA 155


>gi|319407319|emb|CBI80960.1| N utilization substance protein B [Bartonella sp. 1-1C]
          Length = 156

 Score =  146 bits (368), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 69/147 (46%), Positives = 102/147 (69%), Gaps = 3/147 (2%)

Query: 10  LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF 69
           L+L+++RG ARLAAVQALYQ+D++G    E+I+EY+ YR   D +    S YL  D +WF
Sbjct: 10  LRLANKRGAARLAAVQALYQMDMVGIGAMEVIAEYKAYRLGKDID---GSQYLDADFQWF 66

Query: 70  RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISE 129
             II GV+  ++ +D ++   L+E+W+ SRLD  L +ILRAG+ ELI    VP+ VI++E
Sbjct: 67  CSIIVGVVRDQKQLDPMLHKQLSEEWALSRLDSTLRAILRAGLWELINRKDVPIAVILNE 126

Query: 130 YVCIAHDFFYGDEPKFINAVLDKVSRK 156
           Y+ IA  FF  DEP+ +NAVLD ++++
Sbjct: 127 YIDIAKAFFDNDEPRLVNAVLDSIAKE 153


>gi|254718887|ref|ZP_05180698.1| transcription antitermination protein NusB [Brucella sp. 83/13]
 gi|265983873|ref|ZP_06096608.1| conserved hypothetical protein [Brucella sp. 83/13]
 gi|306838197|ref|ZP_07471051.1| transcription antitermination factor NusB [Brucella sp. NF 2653]
 gi|264662465|gb|EEZ32726.1| conserved hypothetical protein [Brucella sp. 83/13]
 gi|306406706|gb|EFM62931.1| transcription antitermination factor NusB [Brucella sp. NF 2653]
          Length = 171

 Score =  146 bits (368), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 67/144 (46%), Positives = 95/144 (65%), Gaps = 3/144 (2%)

Query: 11  KLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFR 70
           + +++RG+ARLAAVQALYQ+D+ G    E+++EYE +R   + +    + YL  D +WFR
Sbjct: 15  RTANKRGVARLAAVQALYQMDVAGTGVMEVVAEYEAFRLGKEVD---GTQYLDADPQWFR 71

Query: 71  VIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEY 130
            I+ GV++ +  +D +I   LTE W  SRLD  L +ILRAG  EL     VP  VI+SEY
Sbjct: 72  AIVAGVVEDQLKLDPMIHQALTEGWPLSRLDSTLRAILRAGAWELKARKDVPTAVIVSEY 131

Query: 131 VCIAHDFFYGDEPKFINAVLDKVS 154
           V IA  F+  DEPK +NAVLD+++
Sbjct: 132 VDIAKAFYTEDEPKLVNAVLDRLA 155


>gi|306843714|ref|ZP_07476314.1| transcription antitermination factor NusB [Brucella sp. BO1]
 gi|306276024|gb|EFM57733.1| transcription antitermination factor NusB [Brucella sp. BO1]
          Length = 171

 Score =  145 bits (367), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 67/144 (46%), Positives = 95/144 (65%), Gaps = 3/144 (2%)

Query: 11  KLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFR 70
           + +++RG+ARLAAVQALYQ+D+ G    E+++EYE +R   + +    + YL  D +WFR
Sbjct: 15  RTANKRGVARLAAVQALYQMDVAGTGVMEVVAEYEAFRLGKEVD---GTQYLDADPQWFR 71

Query: 71  VIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEY 130
            I+ GV++ +  +D +I   LTE W  SRLD  L +ILRAG  EL     VP  VI+SEY
Sbjct: 72  AIVAGVVEDQLKLDPMIHQALTEDWPLSRLDSTLRAILRAGAWELKARKDVPTAVIVSEY 131

Query: 131 VCIAHDFFYGDEPKFINAVLDKVS 154
           V IA  F+  DEPK +NAVLD+++
Sbjct: 132 VDIAKAFYTEDEPKLVNAVLDRLA 155


>gi|23501657|ref|NP_697784.1| transcription antitermination protein NusB [Brucella suis 1330]
 gi|148560649|ref|YP_001258749.1| transcription antitermination protein NusB [Brucella ovis ATCC
           25840]
 gi|161618737|ref|YP_001592624.1| transcription antitermination protein NusB [Brucella canis ATCC
           23365]
 gi|225627268|ref|ZP_03785305.1| transcription antitermination factor NusB [Brucella ceti str. Cudo]
 gi|254701543|ref|ZP_05163371.1| transcription antitermination protein NusB [Brucella suis bv. 5
           str. 513]
 gi|254704092|ref|ZP_05165920.1| transcription antitermination protein NusB [Brucella suis bv. 3
           str. 686]
 gi|254707007|ref|ZP_05168835.1| transcription antitermination protein NusB [Brucella pinnipedialis
           M163/99/10]
 gi|254709884|ref|ZP_05171695.1| transcription antitermination protein NusB [Brucella pinnipedialis
           B2/94]
 gi|254713885|ref|ZP_05175696.1| transcription antitermination protein NusB [Brucella ceti
           M644/93/1]
 gi|254717058|ref|ZP_05178869.1| transcription antitermination protein NusB [Brucella ceti M13/05/1]
 gi|256031377|ref|ZP_05444991.1| transcription antitermination protein NusB [Brucella pinnipedialis
           M292/94/1]
 gi|256060886|ref|ZP_05451046.1| transcription antitermination protein NusB [Brucella neotomae 5K33]
 gi|256159498|ref|ZP_05457266.1| transcription antitermination protein NusB [Brucella ceti
           M490/95/1]
 gi|256254784|ref|ZP_05460320.1| transcription antitermination protein NusB [Brucella ceti B1/94]
 gi|256369202|ref|YP_003106710.1| transcription antitermination protein NusB [Brucella microti CCM
           4915]
 gi|260168510|ref|ZP_05755321.1| transcription antitermination protein NusB [Brucella sp. F5/99]
 gi|260566660|ref|ZP_05837130.1| antitermination protein NusB [Brucella suis bv. 4 str. 40]
 gi|261218868|ref|ZP_05933149.1| conserved hypothetical protein [Brucella ceti M13/05/1]
 gi|261221964|ref|ZP_05936245.1| conserved hypothetical protein [Brucella ceti B1/94]
 gi|261314474|ref|ZP_05953671.1| conserved hypothetical protein [Brucella pinnipedialis M163/99/10]
 gi|261317426|ref|ZP_05956623.1| conserved hypothetical protein [Brucella pinnipedialis B2/94]
 gi|261321633|ref|ZP_05960830.1| conserved hypothetical protein [Brucella ceti M644/93/1]
 gi|261324884|ref|ZP_05964081.1| conserved hypothetical protein [Brucella neotomae 5K33]
 gi|261752093|ref|ZP_05995802.1| transcription antitermination protein NusB [Brucella suis bv. 5
           str. 513]
 gi|261754752|ref|ZP_05998461.1| conserved hypothetical protein [Brucella suis bv. 3 str. 686]
 gi|261757980|ref|ZP_06001689.1| antitermination protein NusB [Brucella sp. F5/99]
 gi|265988463|ref|ZP_06101020.1| conserved hypothetical protein [Brucella pinnipedialis M292/94/1]
 gi|265997927|ref|ZP_06110484.1| conserved hypothetical protein [Brucella ceti M490/95/1]
 gi|294852131|ref|ZP_06792804.1| transcription antitermination factor NusB [Brucella sp. NVSL
           07-0026]
 gi|32171662|sp|Q8G1E7|NUSB_BRUSU RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|166215665|sp|A5VPV2|NUSB_BRUO2 RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|189035880|sp|A9MAF0|NUSB_BRUC2 RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|23347577|gb|AAN29699.1| N utilization substance protein B [Brucella suis 1330]
 gi|148371906|gb|ABQ61885.1| transcription antitermination factor NusB [Brucella ovis ATCC
           25840]
 gi|161335548|gb|ABX61853.1| transcription antitermination factor NusB [Brucella canis ATCC
           23365]
 gi|225617273|gb|EEH14318.1| transcription antitermination factor NusB [Brucella ceti str. Cudo]
 gi|255999362|gb|ACU47761.1| transcription antitermination protein NusB [Brucella microti CCM
           4915]
 gi|260156178|gb|EEW91258.1| antitermination protein NusB [Brucella suis bv. 4 str. 40]
 gi|260920548|gb|EEX87201.1| conserved hypothetical protein [Brucella ceti B1/94]
 gi|260923957|gb|EEX90525.1| conserved hypothetical protein [Brucella ceti M13/05/1]
 gi|261294323|gb|EEX97819.1| conserved hypothetical protein [Brucella ceti M644/93/1]
 gi|261296649|gb|EEY00146.1| conserved hypothetical protein [Brucella pinnipedialis B2/94]
 gi|261300864|gb|EEY04361.1| conserved hypothetical protein [Brucella neotomae 5K33]
 gi|261303500|gb|EEY06997.1| conserved hypothetical protein [Brucella pinnipedialis M163/99/10]
 gi|261737964|gb|EEY25960.1| antitermination protein NusB [Brucella sp. F5/99]
 gi|261741846|gb|EEY29772.1| transcription antitermination protein NusB [Brucella suis bv. 5
           str. 513]
 gi|261744505|gb|EEY32431.1| conserved hypothetical protein [Brucella suis bv. 3 str. 686]
 gi|262552395|gb|EEZ08385.1| conserved hypothetical protein [Brucella ceti M490/95/1]
 gi|264660660|gb|EEZ30921.1| conserved hypothetical protein [Brucella pinnipedialis M292/94/1]
 gi|294820720|gb|EFG37719.1| transcription antitermination factor NusB [Brucella sp. NVSL
           07-0026]
          Length = 171

 Score =  145 bits (367), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 67/144 (46%), Positives = 95/144 (65%), Gaps = 3/144 (2%)

Query: 11  KLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFR 70
           + +++RG+ARLAAVQALYQ+D+ G    E+++EYE +R   + +    + YL  D +WFR
Sbjct: 15  RTANKRGVARLAAVQALYQMDVAGTGVMEVVAEYEAFRLGKEVD---GTQYLDADPQWFR 71

Query: 71  VIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEY 130
            I+ GV++ +  +D +I   LTE W  SRLD  L +ILRAG  EL     VP  VI+SEY
Sbjct: 72  AIVAGVVEDQLKLDPMIHQALTEDWPLSRLDSTLRAILRAGAWELKARKDVPTAVIVSEY 131

Query: 131 VCIAHDFFYGDEPKFINAVLDKVS 154
           V IA  F+  DEPK +NAVLD+++
Sbjct: 132 VDIAKAFYTEDEPKLVNAVLDRLA 155


>gi|304391939|ref|ZP_07373881.1| transcription antitermination factor NusB [Ahrensia sp. R2A130]
 gi|303296168|gb|EFL90526.1| transcription antitermination factor NusB [Ahrensia sp. R2A130]
          Length = 186

 Score =  145 bits (365), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 69/147 (46%), Positives = 97/147 (65%), Gaps = 3/147 (2%)

Query: 10  LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF 69
           +K +++RG ARL+AVQALYQ+DI G   TE+++EYE +R     E+D E+ YL  D  WF
Sbjct: 8   MKPANKRGSARLSAVQALYQMDIGGAGLTEVVAEYENFRLG--HEIDGET-YLDADPSWF 64

Query: 70  RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISE 129
           R I+ GV+  ++ ID +I   LT+ W  SR+D  L ++LRA V ELI    V   V++SE
Sbjct: 65  RGIVGGVVRDQKKIDPVIHDALTKDWPLSRIDSTLRAVLRAAVFELINRPDVSARVVVSE 124

Query: 130 YVCIAHDFFYGDEPKFINAVLDKVSRK 156
           Y+ +   FF  DEPK +N VLDKV+R+
Sbjct: 125 YIEVTKAFFESDEPKMVNGVLDKVARQ 151


>gi|114704829|ref|ZP_01437737.1| transcription antitermination protein NusB [Fulvimarina pelagi
           HTCC2506]
 gi|114539614|gb|EAU42734.1| transcription antitermination protein NusB [Fulvimarina pelagi
           HTCC2506]
          Length = 163

 Score =  144 bits (364), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 72/153 (47%), Positives = 103/153 (67%), Gaps = 3/153 (1%)

Query: 4   QDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLH 63
           +  ++  + +++RG+ARLAAVQALYQ+DI G    E ++EYET+R     E+D E+ Y  
Sbjct: 3   ETKQRSFRPANKRGVARLAAVQALYQMDIGGTPLVETVAEYETHRMG--HEIDGET-YRV 59

Query: 64  VDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPV 123
            D  WFR I+ GV+ R++ ID +I + L   W  SRLD  L +ILRAGV E+   + VPV
Sbjct: 60  ADAAWFRDIVSGVVRRQKAIDPIIHANLPPGWPLSRLDSTLRAILRAGVYEIETRNDVPV 119

Query: 124 EVIISEYVCIAHDFFYGDEPKFINAVLDKVSRK 156
            VI+SEYV +A  FF  +EPK +NA+LD+V+R+
Sbjct: 120 AVIVSEYVDVAKAFFEEEEPKLVNALLDRVARE 152


>gi|163843041|ref|YP_001627445.1| transcription antitermination protein NusB [Brucella suis ATCC
           23445]
 gi|189035881|sp|B0CL95|NUSB_BRUSI RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|163673764|gb|ABY37875.1| transcription antitermination factor NusB [Brucella suis ATCC
           23445]
          Length = 171

 Score =  144 bits (364), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 66/144 (45%), Positives = 94/144 (65%), Gaps = 3/144 (2%)

Query: 11  KLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFR 70
           + +++RG+ARLAA QALYQ+D+ G    E+++EYE +R   + +    + YL  D +WFR
Sbjct: 15  RTANKRGVARLAAAQALYQMDVAGTGVMEVVAEYEAFRLGKEVD---GTQYLDADPQWFR 71

Query: 71  VIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEY 130
            I+ GV++ +  +D +I   LTE W  SRLD  L +ILRAG  EL     VP  VI+SEY
Sbjct: 72  AIVAGVVEDQLKLDPMIHQALTEDWPLSRLDSTLRAILRAGAWELKARKDVPTAVIVSEY 131

Query: 131 VCIAHDFFYGDEPKFINAVLDKVS 154
           V IA  F+  DEPK +NAVLD+++
Sbjct: 132 VDIAKAFYTEDEPKLVNAVLDRLA 155


>gi|17987469|ref|NP_540103.1| transcription antitermination protein NusB [Brucella melitensis bv.
           1 str. 16M]
 gi|256044456|ref|ZP_05447360.1| transcription antitermination protein NusB [Brucella melitensis bv.
           1 str. Rev.1]
 gi|260563807|ref|ZP_05834293.1| antitermination protein NusB [Brucella melitensis bv. 1 str. 16M]
 gi|265990877|ref|ZP_06103434.1| conserved hypothetical protein [Brucella melitensis bv. 1 str.
           Rev.1]
 gi|22095950|sp|Q8YGH3|NUSB_BRUME RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|17983165|gb|AAL52367.1| n utilization substance protein b [Brucella melitensis bv. 1 str.
           16M]
 gi|260153823|gb|EEW88915.1| antitermination protein NusB [Brucella melitensis bv. 1 str. 16M]
 gi|263001661|gb|EEZ14236.1| conserved hypothetical protein [Brucella melitensis bv. 1 str.
           Rev.1]
          Length = 171

 Score =  144 bits (363), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 66/144 (45%), Positives = 95/144 (65%), Gaps = 3/144 (2%)

Query: 11  KLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFR 70
           + +++RG+ARLAAVQAL+Q+D+ G    E+++EYE +R   + +    + YL  D +WFR
Sbjct: 15  RTANKRGVARLAAVQALFQMDVAGTGVMEVVAEYEAFRLGKEVD---GTQYLDADPQWFR 71

Query: 71  VIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEY 130
            I+ GV++ +  +D +I   LTE W  SRLD  L +ILRAG  EL     VP  VI+SEY
Sbjct: 72  AIVAGVVEDQLKLDPMIHQALTEDWPLSRLDSTLRAILRAGAWELKARKDVPTAVIVSEY 131

Query: 131 VCIAHDFFYGDEPKFINAVLDKVS 154
           V IA  F+  DEPK +NAVLD+++
Sbjct: 132 VDIAKAFYTEDEPKLVNAVLDRLA 155


>gi|62289722|ref|YP_221515.1| transcription antitermination protein NusB [Brucella abortus bv. 1
           str. 9-941]
 gi|82699651|ref|YP_414225.1| transcription antitermination protein NusB [Brucella melitensis
           biovar Abortus 2308]
 gi|189023971|ref|YP_001934739.1| transcription antitermination protein NusB [Brucella abortus S19]
 gi|225852286|ref|YP_002732519.1| transcription antitermination protein NusB [Brucella melitensis
           ATCC 23457]
 gi|237815210|ref|ZP_04594208.1| transcription antitermination factor NusB [Brucella abortus str.
           2308 A]
 gi|254689031|ref|ZP_05152285.1| transcription antitermination protein NusB [Brucella abortus bv. 6
           str. 870]
 gi|254693514|ref|ZP_05155342.1| transcription antitermination protein NusB [Brucella abortus bv. 3
           str. Tulya]
 gi|254697166|ref|ZP_05158994.1| transcription antitermination protein NusB [Brucella abortus bv. 2
           str. 86/8/59]
 gi|254730062|ref|ZP_05188640.1| transcription antitermination protein NusB [Brucella abortus bv. 4
           str. 292]
 gi|256113300|ref|ZP_05454168.1| transcription antitermination protein NusB [Brucella melitensis bv.
           3 str. Ether]
 gi|256257281|ref|ZP_05462817.1| transcription antitermination protein NusB [Brucella abortus bv. 9
           str. C68]
 gi|256264209|ref|ZP_05466741.1| antitermination protein NusB [Brucella melitensis bv. 2 str. 63/9]
 gi|260545525|ref|ZP_05821266.1| antitermination protein NusB [Brucella abortus NCTC 8038]
 gi|260754526|ref|ZP_05866874.1| transcription antitermination protein NusB [Brucella abortus bv. 6
           str. 870]
 gi|260757747|ref|ZP_05870095.1| transcription antitermination protein NusB [Brucella abortus bv. 4
           str. 292]
 gi|260761572|ref|ZP_05873915.1| transcription antitermination protein NusB [Brucella abortus bv. 2
           str. 86/8/59]
 gi|260883554|ref|ZP_05895168.1| conserved hypothetical protein [Brucella abortus bv. 9 str. C68]
 gi|261213774|ref|ZP_05928055.1| transcription antitermination protein NusB [Brucella abortus bv. 3
           str. Tulya]
 gi|265994713|ref|ZP_06107270.1| conserved hypothetical protein [Brucella melitensis bv. 3 str.
           Ether]
 gi|297248127|ref|ZP_06931845.1| transcription antitermination factor NusB [Brucella abortus bv. 5
           str. B3196]
 gi|75496998|sp|Q57DY0|NUSB_BRUAB RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|119372280|sp|Q2YNC5|NUSB_BRUA2 RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|238689358|sp|B2S518|NUSB_BRUA1 RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|254772617|sp|C0RIA7|NUSB_BRUMB RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|62195854|gb|AAX74154.1| NusB, N utilization substance protein B [Brucella abortus bv. 1
           str. 9-941]
 gi|82615752|emb|CAJ10748.1| Antitermination protein NusB [Brucella melitensis biovar Abortus
           2308]
 gi|189019543|gb|ACD72265.1| Antitermination protein NusB [Brucella abortus S19]
 gi|225640651|gb|ACO00565.1| transcription antitermination factor NusB [Brucella melitensis ATCC
           23457]
 gi|237790047|gb|EEP64257.1| transcription antitermination factor NusB [Brucella abortus str.
           2308 A]
 gi|260096932|gb|EEW80807.1| antitermination protein NusB [Brucella abortus NCTC 8038]
 gi|260668065|gb|EEX55005.1| transcription antitermination protein NusB [Brucella abortus bv. 4
           str. 292]
 gi|260672004|gb|EEX58825.1| transcription antitermination protein NusB [Brucella abortus bv. 2
           str. 86/8/59]
 gi|260674634|gb|EEX61455.1| transcription antitermination protein NusB [Brucella abortus bv. 6
           str. 870]
 gi|260873082|gb|EEX80151.1| conserved hypothetical protein [Brucella abortus bv. 9 str. C68]
 gi|260915381|gb|EEX82242.1| transcription antitermination protein NusB [Brucella abortus bv. 3
           str. Tulya]
 gi|262765826|gb|EEZ11615.1| conserved hypothetical protein [Brucella melitensis bv. 3 str.
           Ether]
 gi|263094453|gb|EEZ18275.1| antitermination protein NusB [Brucella melitensis bv. 2 str. 63/9]
 gi|297175296|gb|EFH34643.1| transcription antitermination factor NusB [Brucella abortus bv. 5
           str. B3196]
 gi|326408790|gb|ADZ65855.1| Antitermination protein NusB [Brucella melitensis M28]
 gi|326538508|gb|ADZ86723.1| transcription antitermination factor NusB [Brucella melitensis
           M5-90]
          Length = 171

 Score =  144 bits (363), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 66/144 (45%), Positives = 95/144 (65%), Gaps = 3/144 (2%)

Query: 11  KLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFR 70
           + +++RG+ARLAAVQAL+Q+D+ G    E+++EYE +R   + +    + YL  D +WFR
Sbjct: 15  RTANKRGVARLAAVQALFQMDVAGTGVMEVVAEYEAFRLGKEVD---GTQYLDADPQWFR 71

Query: 71  VIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEY 130
            I+ GV++ +  +D +I   LTE W  SRLD  L +ILRAG  EL     VP  VI+SEY
Sbjct: 72  AIVAGVVEDQLKLDPMIHQALTEDWPLSRLDSTLRAILRAGAWELKARKDVPTAVIVSEY 131

Query: 131 VCIAHDFFYGDEPKFINAVLDKVS 154
           V IA  F+  DEPK +NAVLD+++
Sbjct: 132 VDIAKAFYTEDEPKLVNAVLDRLA 155


>gi|90419413|ref|ZP_01227323.1| putative transcription termination protein NusB [Aurantimonas
           manganoxydans SI85-9A1]
 gi|90336350|gb|EAS50091.1| putative transcription termination protein NusB [Aurantimonas
           manganoxydans SI85-9A1]
          Length = 177

 Score =  144 bits (362), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 70/164 (42%), Positives = 103/164 (62%), Gaps = 4/164 (2%)

Query: 1   MTIQDNK-KDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVES 59
           M+  D + + +K +++RG ARLAAVQALYQ+++ G +  E ++EYE +R    +E+D E+
Sbjct: 1   MSSSDPQARPVKQANKRGAARLAAVQALYQMEVGGTALLETVAEYENFRLG--SEIDGET 58

Query: 60  VYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECH 119
            Y   D  WFR ++ GV+  +  ID  I + L   W  SR+D  L +ILRAG  EL    
Sbjct: 59  -YREADAGWFRDVVSGVVRSQTEIDPKIHASLPTDWPLSRIDTTLRAILRAGTYELSNRK 117

Query: 120 SVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRSG 163
            VPV VI+SEY+ +A  F+ GDEP  +NAVLD+V+R    ++ G
Sbjct: 118 DVPVAVIVSEYIDVAKAFYTGDEPGLVNAVLDRVARSVRAEKPG 161


>gi|118587988|ref|ZP_01545398.1| transcription antitermination protein NusB [Stappia aggregata IAM
           12614]
 gi|118439610|gb|EAV46241.1| transcription antitermination protein NusB [Stappia aggregata IAM
           12614]
          Length = 173

 Score =  134 bits (337), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 62/147 (42%), Positives = 96/147 (65%), Gaps = 3/147 (2%)

Query: 8   KDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLE 67
           K ++ +++RG+ARLAAVQALYQ+D+ G   T ++SE+  +R     E+D E  Y   D +
Sbjct: 13  KTVRPANKRGVARLAAVQALYQMDVGGAPLTSVVSEFTAFRLG--KEIDGEQ-YREADEQ 69

Query: 68  WFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVII 127
           WF+ I+ GV++ ++ +D  I + L E W   R+D +L +ILR+G  EL+    VP +VII
Sbjct: 70  WFKQILAGVVEDQKFLDPYIHTALAEDWPLKRIDSLLRAILRSGSYELLRRKDVPAKVII 129

Query: 128 SEYVCIAHDFFYGDEPKFINAVLDKVS 154
           SEY+ +A  FF  DEP  +N VLD+++
Sbjct: 130 SEYIDVAKAFFEDDEPGLVNGVLDRLA 156


>gi|307945261|ref|ZP_07660597.1| transcription antitermination factor NusB [Roseibium sp. TrichSKD4]
 gi|307771134|gb|EFO30359.1| transcription antitermination factor NusB [Roseibium sp. TrichSKD4]
          Length = 173

 Score =  134 bits (336), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 65/155 (41%), Positives = 99/155 (63%), Gaps = 6/155 (3%)

Query: 8   KDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLE 67
           K ++ +++RG+ARLAAVQALYQ+D+     + +ISE+  +R     ELD E  YL  D +
Sbjct: 13  KAVRPANKRGVARLAAVQALYQMDVGEVPLSSVISEFTAFRLG--KELDGEQ-YLDADEQ 69

Query: 68  WFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVII 127
           WF+ I++GV + ++ +D  I   LTE W   R+D +L +ILR+G  EL+    VP +VII
Sbjct: 70  WFKSIVNGVFEDQKFLDPFIHKALTEGWPLKRVDSLLRAILRSGSFELLRRKDVPPKVII 129

Query: 128 SEYVCIAHDFFYGDEPKFINAVLDKVS---RKEEI 159
           SEY+ +   F+  DEP  +N VLD+++   R EE+
Sbjct: 130 SEYIDVTKAFYEADEPGLVNGVLDRLAHELRNEEL 164


>gi|254502610|ref|ZP_05114761.1| transcription antitermination factor NusB [Labrenzia alexandrii
           DFL-11]
 gi|222438681|gb|EEE45360.1| transcription antitermination factor NusB [Labrenzia alexandrii
           DFL-11]
          Length = 177

 Score =  134 bits (336), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 64/144 (44%), Positives = 93/144 (64%), Gaps = 3/144 (2%)

Query: 11  KLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFR 70
           + +++RG+ARLAAVQALYQ+DI G   T ++SEY  +R     E+D E  Y   D +WF+
Sbjct: 20  RPANKRGVARLAAVQALYQMDIGGAPLTNVVSEYTAFRLG--KEIDGEQ-YRDADEQWFK 76

Query: 71  VIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEY 130
            I+ GV+  ++ +D  I + L E W   R+D +L +ILRAG  EL+    VP +VIISEY
Sbjct: 77  HILAGVVADQKFLDPYIHTALKEDWPLKRIDSLLRAILRAGGYELLRRRDVPAKVIISEY 136

Query: 131 VCIAHDFFYGDEPKFINAVLDKVS 154
           + +A  FF  DEP  +N VLD+++
Sbjct: 137 IDVAKAFFEDDEPGLVNGVLDRLA 160


>gi|328543540|ref|YP_004303649.1| transcription antitermination protein NusB [polymorphum gilvum
           SL003B-26A1]
 gi|326413284|gb|ADZ70347.1| transcription antitermination protein NusB [Polymorphum gilvum
           SL003B-26A1]
          Length = 171

 Score =  133 bits (335), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 61/150 (40%), Positives = 96/150 (64%), Gaps = 3/150 (2%)

Query: 5   DNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHV 64
           +  +D + +++RG ARL AVQALYQ+DI G S T++++E+  +R     ELD  + Y   
Sbjct: 8   EGGRDARPANKRGAARLGAVQALYQMDIGGASLTDVVNEFTAFRLG--KELD-GAQYREA 64

Query: 65  DLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVE 124
           D  WF+ ++ GV++ ++ +D  I + L E W   R+D +L +ILRAG  EL+    VP  
Sbjct: 65  DELWFKDVVKGVVEEQRKLDPFIHTALVEDWPLRRIDSLLRAILRAGAYELLRRRDVPAR 124

Query: 125 VIISEYVCIAHDFFYGDEPKFINAVLDKVS 154
           VIISEY+ +A  F+  DEP+ +N VLD+++
Sbjct: 125 VIISEYIDVAKAFYAEDEPRLVNGVLDRLA 154


>gi|110633492|ref|YP_673700.1| transcription antitermination protein NusB [Mesorhizobium sp. BNC1]
 gi|119390783|sp|Q11J90|NUSB_MESSB RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|110284476|gb|ABG62535.1| NusB antitermination factor [Chelativorans sp. BNC1]
          Length = 167

 Score =  133 bits (334), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 71/151 (47%), Positives = 100/151 (66%), Gaps = 6/151 (3%)

Query: 8   KDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLE 67
           ++ + +++RG ARLAAVQALYQ+D+ G    E  +EYE +R   + + D+   Y   D +
Sbjct: 10  ENFRPANKRGAARLAAVQALYQMDVAGTGLLETTAEYEAFRLGKEIDGDL---YREADAQ 66

Query: 68  WFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVII 127
           WFR I+ GV++ +  ID +I   LTE W  SRLD  L +ILRAGV EL +   VPV V++
Sbjct: 67  WFRAILSGVIENQTFIDPVIRQSLTEDWPLSRLDSTLRAILRAGVYELSKRSDVPVPVVV 126

Query: 128 SEYVCIAHDFFYG--DEPKFINAVLDKVSRK 156
           SEY+ IA   FYG  +EPK +NAVLD+V+R+
Sbjct: 127 SEYIDIAK-AFYGEEEEPKLVNAVLDRVARR 156


>gi|254469407|ref|ZP_05082812.1| transcription antitermination factor NusB [Pseudovibrio sp. JE062]
 gi|211961242|gb|EEA96437.1| transcription antitermination factor NusB [Pseudovibrio sp. JE062]
          Length = 163

 Score =  132 bits (333), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 61/158 (38%), Positives = 100/158 (63%), Gaps = 5/158 (3%)

Query: 1   MTIQDNKKD--LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVE 58
           MT ++NKK+  ++ +++RG+ARLAAVQA+YQ++I G    ++++EYE YR     E+D E
Sbjct: 1   MTTENNKKNAEVRPANKRGVARLAAVQAVYQMEITGARLNDVLNEYEAYRLG--QEVDGE 58

Query: 59  SVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIEC 118
             Y   D  WFR ++  V + +  ID  I + L+E W   R+D  L +ILR G  E +  
Sbjct: 59  Q-YRDADPAWFRDLVQAVFEDQLRIDPRIHTALSEDWPLKRIDTTLRAILRVGCAEFLRK 117

Query: 119 HSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRK 156
             VP  VII+EY+ +A  F+ GDE + +N ++++++R+
Sbjct: 118 KDVPARVIINEYIDVAKSFYEGDEARLVNGIMNRLARE 155


>gi|192291385|ref|YP_001991990.1| transcription antitermination protein NusB [Rhodopseudomonas
           palustris TIE-1]
 gi|238692600|sp|B3QJK9|NUSB_RHOPT RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|192285134|gb|ACF01515.1| NusB antitermination factor [Rhodopseudomonas palustris TIE-1]
          Length = 174

 Score =  127 bits (318), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 65/156 (41%), Positives = 95/156 (60%), Gaps = 7/156 (4%)

Query: 1   MTIQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESV 60
           MT +  +K    ++RRG ARLAAVQALYQ+DI G    E  +E+E+  F    E++ E  
Sbjct: 17  MTPKGERK----ANRRGAARLAAVQALYQMDIGGAGINETFAEFES--FWIGNEVEGEQ- 69

Query: 61  YLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHS 120
           YL  +  +FR I+ GV+  ++ ID LI   L   W  +R+D IL +++RAG  EL     
Sbjct: 70  YLPAEAAFFRDIVAGVVREQKQIDPLIDDLLARGWPLARIDAILRAVMRAGAYELEHRKD 129

Query: 121 VPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRK 156
           +P  V++SEYV +AH F   DE   +NAVLD+++R+
Sbjct: 130 IPARVVVSEYVDVAHAFVEKDETGMVNAVLDQIARR 165


>gi|316934108|ref|YP_004109090.1| NusB antitermination factor [Rhodopseudomonas palustris DX-1]
 gi|315601822|gb|ADU44357.1| NusB antitermination factor [Rhodopseudomonas palustris DX-1]
          Length = 173

 Score =  126 bits (317), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 65/156 (41%), Positives = 96/156 (61%), Gaps = 7/156 (4%)

Query: 1   MTIQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESV 60
           MT +  +K    ++RRG ARLAAVQALYQ+DI G    E  +E+E+  F    E++ E  
Sbjct: 17  MTPKGERK----ANRRGAARLAAVQALYQMDIGGAGINETFAEFES--FWIGNEVEGEQ- 69

Query: 61  YLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHS 120
           YL  +  +FR I+ GV+  ++ ID LI   L + W  +R+D IL +++RAG  EL     
Sbjct: 70  YLPAEAAFFRDIVSGVVREQKQIDPLIDDLLAKGWPLARIDAILRAVMRAGAYELEHRKD 129

Query: 121 VPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRK 156
           +P  V++SEYV +AH F   DE   +NAVLD+++R+
Sbjct: 130 IPARVVVSEYVDVAHAFVEKDETGMVNAVLDQIARQ 165


>gi|39935796|ref|NP_948072.1| transcription antitermination protein NusB [Rhodopseudomonas
           palustris CGA009]
 gi|81562525|sp|Q6N688|NUSB_RHOPA RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|39649649|emb|CAE28171.1| antitermination factor, NusB [Rhodopseudomonas palustris CGA009]
          Length = 174

 Score =  126 bits (317), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 68/165 (41%), Positives = 99/165 (60%), Gaps = 10/165 (6%)

Query: 1   MTIQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESV 60
           MT +  +K    ++RRG ARLAAVQALYQ+DI G    E  +E+E+  F    E++ E  
Sbjct: 17  MTPKGERK----ANRRGAARLAAVQALYQMDIGGAGINETFAEFES--FWIGNEVEGEQ- 69

Query: 61  YLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHS 120
           YL  +  +FR I+ GV+  ++ ID LI   L   W  +R+D IL +++RAG  EL     
Sbjct: 70  YLPAEAAFFRDIVAGVVREQKQIDPLIDDLLARGWPLARIDAILRAVMRAGAYELEHRKD 129

Query: 121 VPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRK---EEIKRS 162
           +P  V++SEYV +AH F   DE   +NAVLD+++R+   +E  RS
Sbjct: 130 IPARVVVSEYVDVAHAFVEKDETGMVNAVLDQIARRFREDEFTRS 174


>gi|209884998|ref|YP_002288855.1| transcription antitermination factor NusB [Oligotropha
           carboxidovorans OM5]
 gi|209873194|gb|ACI92990.1| transcription antitermination factor NusB [Oligotropha
           carboxidovorans OM5]
          Length = 156

 Score =  125 bits (313), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 61/144 (42%), Positives = 88/144 (61%), Gaps = 3/144 (2%)

Query: 13  SHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVI 72
           ++RRG ARLAAVQALYQ+DI G    +I +E+E++    + E D    YL  +  +FR I
Sbjct: 9   ANRRGAARLAAVQALYQMDIAGAGINDIFAEFESHWLGNEVEGDE---YLPAEAAFFRDI 65

Query: 73  IHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVC 132
           + GV+  +  ID ++   L+  W   R++ IL + LRAG  EL     VP  V+I EYV 
Sbjct: 66  VSGVVRDQGRIDPMLDEALSRGWPLKRIEAILRATLRAGAYELGHRKDVPARVVIKEYVD 125

Query: 133 IAHDFFYGDEPKFINAVLDKVSRK 156
           +AH FF  DE   +NAVLD+++R+
Sbjct: 126 VAHAFFEADEAGMVNAVLDQIARQ 149


>gi|86749756|ref|YP_486252.1| transcription antitermination protein NusB [Rhodopseudomonas
           palustris HaA2]
 gi|119390808|sp|Q2IWR9|NUSB_RHOP2 RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|86572784|gb|ABD07341.1| NusB antitermination factor [Rhodopseudomonas palustris HaA2]
          Length = 169

 Score =  124 bits (312), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 62/150 (41%), Positives = 93/150 (62%), Gaps = 4/150 (2%)

Query: 7   KKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDL 66
           K D K ++RRG ARLAAVQALYQ+DI G    E  +E+E++    + E D    YL  + 
Sbjct: 15  KGDRK-ANRRGAARLAAVQALYQMDIGGAGINETFAEFESHWIGNEVEGDQ---YLPAEA 70

Query: 67  EWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVI 126
            +FR ++ GV+  ++ +D LI   L + W  +R+D IL +++RAG  EL     +P  V+
Sbjct: 71  AFFRDVVSGVVRDQKKLDPLIDDALAKGWPLARIDAILRAVMRAGAYELEHRKDIPARVV 130

Query: 127 ISEYVCIAHDFFYGDEPKFINAVLDKVSRK 156
           +SEYV +AH F   DE   +NAVLD+++R+
Sbjct: 131 VSEYVDVAHAFVEKDETGMVNAVLDQIARQ 160


>gi|90424163|ref|YP_532533.1| transcription antitermination protein NusB [Rhodopseudomonas
           palustris BisB18]
 gi|119390809|sp|Q214H2|NUSB_RHOPB RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|90106177|gb|ABD88214.1| NusB antitermination factor [Rhodopseudomonas palustris BisB18]
          Length = 169

 Score =  124 bits (310), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 62/155 (40%), Positives = 96/155 (61%), Gaps = 6/155 (3%)

Query: 5   DNK---KDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVY 61
           DNK   K  K ++RRG ARLAAVQALYQ+D+ G    +I +E+E++    + E D    Y
Sbjct: 9   DNKPAPKGEKKANRRGAARLAAVQALYQMDVGGAGLNDIFAEFESHWLGNEVEGDQ---Y 65

Query: 62  LHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSV 121
           L  +  +F+ ++ GV+  +  +D LI   L + W  +R+D IL +++RAG  EL     V
Sbjct: 66  LPAEQAFFQDVVSGVVRDQAKLDPLIDVALAKGWPLARIDAILRAVMRAGAYELEHRKDV 125

Query: 122 PVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRK 156
           P  V++SEYV +A+ F  G+E   +NAVLD+++R+
Sbjct: 126 PARVVVSEYVDVANAFVEGEETGMVNAVLDQIARQ 160


>gi|299135081|ref|ZP_07028272.1| NusB antitermination factor [Afipia sp. 1NLS2]
 gi|298590058|gb|EFI50262.1| NusB antitermination factor [Afipia sp. 1NLS2]
          Length = 166

 Score =  123 bits (309), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 60/144 (41%), Positives = 87/144 (60%), Gaps = 3/144 (2%)

Query: 13  SHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVI 72
           ++RRG ARLAAVQALYQ+DI G    +I +E+E++    + E D    YL  +  +FR +
Sbjct: 17  ANRRGAARLAAVQALYQMDIAGAGINDIFAEFESHWLGNEVEGDE---YLPAEAAFFRDV 73

Query: 73  IHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVC 132
           + GV+  +  ID ++   LT  W   R++ IL + LRAG  EL     VP  V+I EYV 
Sbjct: 74  VSGVVRDQGKIDPMLDEALTRGWPLKRIEAILRATLRAGAYELGHRKDVPARVVIKEYVD 133

Query: 133 IAHDFFYGDEPKFINAVLDKVSRK 156
           +AH F   DE   +NAVLD+++R+
Sbjct: 134 VAHAFVEADEAGMVNAVLDQIARQ 157


>gi|91977147|ref|YP_569806.1| transcription antitermination protein NusB [Rhodopseudomonas
           palustris BisB5]
 gi|119390810|sp|Q136T4|NUSB_RHOPS RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|91683603|gb|ABE39905.1| NusB antitermination factor [Rhodopseudomonas palustris BisB5]
          Length = 174

 Score =  123 bits (308), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 60/152 (39%), Positives = 92/152 (60%), Gaps = 3/152 (1%)

Query: 5   DNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHV 64
           D K   + ++RRG ARLAAVQALYQ+DI G    +  +E+E++    + E D    YL  
Sbjct: 18  DKKPGDRKANRRGAARLAAVQALYQMDIGGAGIDDTFAEFESHWIGNEVEGDQ---YLPA 74

Query: 65  DLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVE 124
           +  +FR I+ GV+  +  +D LI   L + W  +R+D I+ +++RAG  EL     +P  
Sbjct: 75  EAAFFRDIVSGVVRDQTKLDPLIDEALAKGWPLARIDAIIRAVMRAGAYELEHRKDIPAR 134

Query: 125 VIISEYVCIAHDFFYGDEPKFINAVLDKVSRK 156
           V++SEYV +AH F   DE   +NAVLD+++R+
Sbjct: 135 VVVSEYVDVAHAFVEKDETGMVNAVLDQIARQ 166


>gi|312113512|ref|YP_004011108.1| NusB antitermination factor [Rhodomicrobium vannielii ATCC 17100]
 gi|311218641|gb|ADP70009.1| NusB antitermination factor [Rhodomicrobium vannielii ATCC 17100]
          Length = 185

 Score =  122 bits (307), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 66/168 (39%), Positives = 96/168 (57%), Gaps = 10/168 (5%)

Query: 7   KKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDL 66
           K DL     R  ARLAAVQALYQ+++     + ++ E+   RF      +   +Y   D 
Sbjct: 12  KADLPAGQPRTRARLAAVQALYQMEMTQRDLSLVLQEFLGRRF------ETVEIYAGADR 65

Query: 67  EWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVI 126
            +FR I+ G+   +  IDL I++ L   W  SR+D IL +ILR+GV EL + + VP   +
Sbjct: 66  SFFRDIVEGIARGQAKIDLEIAAHLASGWKLSRIDSILRAILRSGVYELTDRNDVPARAV 125

Query: 127 ISEYVCIAHDFFYGDEPKFINAVLDKVSR----KEEIKRSGCVSAITQ 170
           I+EYV IA DFF G+EP  +N VLD+V+R    +E  ++SG     T+
Sbjct: 126 INEYVEIAKDFFGGEEPGVVNGVLDRVARAKRSREFGRKSGGKGGPTK 173


>gi|27380139|ref|NP_771668.1| transcription antitermination protein NusB [Bradyrhizobium
           japonicum USDA 110]
 gi|32171616|sp|Q89K81|NUSB_BRAJA RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|27353293|dbj|BAC50293.1| N-utilization substance protein B [Bradyrhizobium japonicum USDA
           110]
          Length = 165

 Score =  122 bits (305), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 62/156 (39%), Positives = 95/156 (60%), Gaps = 7/156 (4%)

Query: 5   DNKKDLKLS----HRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESV 60
           +NKK   L+    +RRG ARLAAVQALYQ+DI G    +I +E+E++    + E D    
Sbjct: 4   NNKKPAGLTEKKANRRGAARLAAVQALYQMDIAGAGINDIFAEFESHWLGNEVEGDT--- 60

Query: 61  YLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHS 120
           YL  +  +FR ++ GV+  ++ +D LI   L++ W   R++ IL ++LRAG  EL     
Sbjct: 61  YLPAEAAFFRDVVSGVVRDQKKLDPLIDEALSKGWPLKRIEAILRAVLRAGAYELQHRKD 120

Query: 121 VPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRK 156
           VP  V++SEYV +A+ F   +E   +NAVLD++ R+
Sbjct: 121 VPGRVVVSEYVDVANAFVDREETGMVNAVLDQIGRQ 156


>gi|92117364|ref|YP_577093.1| transcription antitermination protein NusB [Nitrobacter
           hamburgensis X14]
 gi|119390788|sp|Q1QMB4|NUSB_NITHX RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|91800258|gb|ABE62633.1| NusB antitermination factor [Nitrobacter hamburgensis X14]
          Length = 160

 Score =  120 bits (302), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 59/146 (40%), Positives = 91/146 (62%), Gaps = 3/146 (2%)

Query: 11  KLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFR 70
           K ++RRG ARLAAVQALYQ++I G    ++ +E+E++   ++ E D    YL  +  +FR
Sbjct: 10  KKANRRGAARLAAVQALYQMEIGGAGINDVFAEFESHWLGSEVEGDK---YLPAEAAFFR 66

Query: 71  VIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEY 130
            ++ GV+  +  +D LI   L+  W   R+D IL ++LRAG  EL     VP  V++SEY
Sbjct: 67  DVVAGVVRDQARLDPLIDDALSRGWPLKRIDAILRAVLRAGSYELEHRKDVPARVVVSEY 126

Query: 131 VCIAHDFFYGDEPKFINAVLDKVSRK 156
           V +AH F   +E   +NAVLD+++R+
Sbjct: 127 VDVAHAFIEKEEVGMVNAVLDQIARR 152


>gi|148255993|ref|YP_001240578.1| transcription antitermination protein NusB [Bradyrhizobium sp.
           BTAi1]
 gi|166918804|sp|A5EKH8|NUSB_BRASB RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|146408166|gb|ABQ36672.1| NusB antitermination factor [Bradyrhizobium sp. BTAi1]
          Length = 169

 Score =  120 bits (302), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 58/146 (39%), Positives = 93/146 (63%), Gaps = 3/146 (2%)

Query: 11  KLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFR 70
           + ++RRG ARLAAVQALYQ+DI G    ++++E+E++   ++ E +    YL  +  +FR
Sbjct: 18  RKANRRGAARLAAVQALYQMDIAGAGINDVLAEFESHWLGSEVEGEQ---YLPAEAAFFR 74

Query: 71  VIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEY 130
            I+ GV+  +  ID ++ + L   W   R++ IL ++LRAG  EL     VP +V++SEY
Sbjct: 75  DIVSGVVRDQTKIDPVLDTALERGWPLQRIEAILRAVLRAGAYELERRKDVPAKVVVSEY 134

Query: 131 VCIAHDFFYGDEPKFINAVLDKVSRK 156
           V IAH F   DE   +NAVL++++R+
Sbjct: 135 VDIAHAFVERDETGMVNAVLEQLARQ 160


>gi|146341341|ref|YP_001206389.1| transcription antitermination protein NusB [Bradyrhizobium sp.
           ORS278]
 gi|166918805|sp|A4YW92|NUSB_BRASO RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|146194147|emb|CAL78168.1| antitermination factor (L factor) (N utilization substance protein
           B) [Bradyrhizobium sp. ORS278]
          Length = 168

 Score =  119 bits (299), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 58/146 (39%), Positives = 92/146 (63%), Gaps = 3/146 (2%)

Query: 11  KLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFR 70
           + ++RRG ARLAAVQALYQ+DI G    ++++E+E++    + E +    YL  +  +FR
Sbjct: 17  RKANRRGAARLAAVQALYQMDIAGAGINDVLAEFESHWLGNEVEGEQ---YLPAEAAFFR 73

Query: 71  VIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEY 130
            I+ GV+  +  ID ++ + L   W   R++ IL ++LRAG  EL     VP +V++SEY
Sbjct: 74  DIVSGVVRDQTKIDPVLDTALERGWPLQRIEAILRAVLRAGAYELERRKDVPAKVVVSEY 133

Query: 131 VCIAHDFFYGDEPKFINAVLDKVSRK 156
           V IAH F   DE   +NAVL++++R+
Sbjct: 134 VDIAHAFVERDETGMVNAVLEQLARQ 159


>gi|115524819|ref|YP_781730.1| transcription antitermination protein NusB [Rhodopseudomonas
           palustris BisA53]
 gi|115518766|gb|ABJ06750.1| NusB antitermination factor [Rhodopseudomonas palustris BisA53]
          Length = 174

 Score =  118 bits (295), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 59/150 (39%), Positives = 94/150 (62%), Gaps = 4/150 (2%)

Query: 7   KKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDL 66
           K D K ++RRG ARLAAVQALYQ+++ G    +I +E+E++    + E +    YL  + 
Sbjct: 20  KGDRK-ANRRGAARLAAVQALYQMEVGGAGLNDIFAEFESHWLGHEVEGEQ---YLPAEA 75

Query: 67  EWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVI 126
            +F+ I+ GV+  +  +D LI   L+  W  +R++ IL +++RAG  EL     VP  V+
Sbjct: 76  AFFQDIVSGVVRDQLQLDPLIDEALSRGWPLARIEAILRAVMRAGAYELQHRKDVPARVV 135

Query: 127 ISEYVCIAHDFFYGDEPKFINAVLDKVSRK 156
           +SEYV +A+ F  GDE   +NAVLD+++R+
Sbjct: 136 VSEYVDVANAFVEGDETGMVNAVLDQIARQ 165


>gi|75675914|ref|YP_318335.1| transcription antitermination protein NusB [Nitrobacter
           winogradskyi Nb-255]
 gi|119390791|sp|Q3SRV8|NUSB_NITWN RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|74420784|gb|ABA04983.1| NusB antitermination factor [Nitrobacter winogradskyi Nb-255]
          Length = 161

 Score =  117 bits (293), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 58/146 (39%), Positives = 90/146 (61%), Gaps = 3/146 (2%)

Query: 11  KLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFR 70
           + ++RRG ARLAAVQALYQ++I G    ++ +E++++    + E D    YL  +  +FR
Sbjct: 10  RKANRRGAARLAAVQALYQMEIGGAGINDVFAEFDSHWLGNEVEGDR---YLPAEAAFFR 66

Query: 71  VIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEY 130
            ++ GV+  +  ID LI   L++ W   R+  IL ++LRAG  EL     VP  V++SEY
Sbjct: 67  DVVAGVVRDQVRIDPLIDDALSKSWPLKRVAAILRAVLRAGSYELEHRKDVPARVVVSEY 126

Query: 131 VCIAHDFFYGDEPKFINAVLDKVSRK 156
           V +AH F   DE   +NAVLD+++R+
Sbjct: 127 VDVAHAFVEKDEAGMVNAVLDQIARR 152


>gi|85715455|ref|ZP_01046436.1| transcription antitermination protein NusB [Nitrobacter sp.
           Nb-311A]
 gi|85697650|gb|EAQ35526.1| transcription antitermination protein NusB [Nitrobacter sp.
           Nb-311A]
          Length = 160

 Score =  115 bits (289), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 56/146 (38%), Positives = 90/146 (61%), Gaps = 3/146 (2%)

Query: 11  KLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFR 70
           + ++RRG ARLAAVQALYQ++I G    ++ +E++++    + E D    YL  +  +FR
Sbjct: 10  RKANRRGAARLAAVQALYQMEISGAGVNDVFAEFDSHWLGNEVEGDR---YLPAEAAFFR 66

Query: 71  VIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEY 130
            ++ GV+  +  ID LI   L++ W   R+  IL ++LRAG  EL     +P  V++SEY
Sbjct: 67  DVVAGVVRDQVRIDPLIDDALSKGWPLKRIAAILRAVLRAGSYELEHRKDIPARVVVSEY 126

Query: 131 VCIAHDFFYGDEPKFINAVLDKVSRK 156
           V +AH F   +E   +NAVLD+++R+
Sbjct: 127 VDVAHAFVENEEAGMVNAVLDQIARR 152


>gi|254417847|ref|ZP_05031571.1| transcription antitermination factor NusB [Brevundimonas sp. BAL3]
 gi|196184024|gb|EDX79000.1| transcription antitermination factor NusB [Brevundimonas sp. BAL3]
          Length = 174

 Score =  113 bits (283), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 58/145 (40%), Positives = 88/145 (60%), Gaps = 3/145 (2%)

Query: 11  KLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFR 70
           K    R ++RLAAVQALYQ+++ G     +I+E+  +RF  DT+++ E++    D  +F 
Sbjct: 29  KQRRARTVSRLAAVQALYQMELAGEGVETVITEFANFRF--DTDIEGEAL-AEADEAYFA 85

Query: 71  VIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEY 130
            I+ GV++ ++ ID  I + L   W   R+D  L ++LR+G  ELI+    P EV+I EY
Sbjct: 86  DIVRGVIESQRDIDTAIKARLASNWKLERIDATLRALLRSGAWELIKHPETPREVVIDEY 145

Query: 131 VCIAHDFFYGDEPKFINAVLDKVSR 155
           V +A  FF   E +F+NA LD VSR
Sbjct: 146 VELAKAFFDDSEARFVNAALDGVSR 170


>gi|58040838|ref|YP_192802.1| NusB family protein [Gluconobacter oxydans 621H]
 gi|81556897|sp|Q5FNA1|NUSB_GLUOX RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|58003252|gb|AAW62146.1| NusB family protein [Gluconobacter oxydans 621H]
          Length = 160

 Score =  113 bits (282), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 60/156 (38%), Positives = 89/156 (57%), Gaps = 2/156 (1%)

Query: 1   MTIQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESV 60
           MT+ D          R IAR+AAVQAL+Q +  G +   +IS++  +R  + T    +  
Sbjct: 1   MTVTDAPSANPTRRSRTIARVAAVQALFQCEQSGDTAETVISQFIRHRRISSTASFDDGH 60

Query: 61  YLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHS 120
               DL+ F+ I+ GV  R+  ID  +S  L E+W   RLD +L ++LRA V E+     
Sbjct: 61  IPDADLKLFQEIVLGVTRRQDDIDAKLSDVLPEQWPLPRLDPVLRALLRAAVFEI--GTD 118

Query: 121 VPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRK 156
            P  +II+EY+ +AH FF GDEPK +N +LD +SR+
Sbjct: 119 TPDRIIINEYLDVAHGFFSGDEPKMVNGILDTLSRR 154


>gi|330993560|ref|ZP_08317495.1| N utilization substance protein B-like protein [Gluconacetobacter
           sp. SXCC-1]
 gi|329759590|gb|EGG76099.1| N utilization substance protein B-like protein [Gluconacetobacter
           sp. SXCC-1]
          Length = 177

 Score =  112 bits (280), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 57/159 (35%), Positives = 86/159 (54%), Gaps = 4/159 (2%)

Query: 1   MTIQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELD---V 57
           MT  D  +  K+  R   +R+AAVQAL+QI+  G S   +I+++  +R       D    
Sbjct: 1   MTQTDGDRQPKVRSRTA-SRVAAVQALFQIEQAGESPEHVINQFNRHRLGTSVVQDGSYA 59

Query: 58  ESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIE 117
           E      D   F +++ G + R++ ID L+   L   W  +RLD +L +I+ A   E+  
Sbjct: 60  EGQVPDADARLFGIVVRGAVARQERIDGLLHEILPASWPLARLDPVLRAIMHAAGGEMTG 119

Query: 118 CHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRK 156
              VP  VII+EY+ IAH F  GDEP+ +N VLD +SR+
Sbjct: 120 ADPVPARVIINEYMDIAHGFLAGDEPRMLNGVLDALSRR 158


>gi|158422890|ref|YP_001524182.1| antitermination protein [Azorhizobium caulinodans ORS 571]
 gi|158329779|dbj|BAF87264.1| antitermination protein [Azorhizobium caulinodans ORS 571]
          Length = 137

 Score =  112 bits (280), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 52/133 (39%), Positives = 80/133 (60%), Gaps = 3/133 (2%)

Query: 24  VQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHI 83
           +QALYQ+DI G    EI++E+ET+    + E DV   Y   D   FR ++ GV+ +++ I
Sbjct: 1   MQALYQMDIAGTPVNEILAEFETHWLGREVEGDV---YPEADRALFRTVVEGVLAQQRTI 57

Query: 84  DLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEP 143
           D ++   LT  W   R+++++ + LRAG  ELI     P  V+I+EYV +A  FF  +E 
Sbjct: 58  DPMVDEALTAGWPLRRVELVMRATLRAGAFELIGKPETPARVVIAEYVNVAAAFFEREET 117

Query: 144 KFINAVLDKVSRK 156
             +NAVLD ++RK
Sbjct: 118 GMVNAVLDSLARK 130


>gi|154253354|ref|YP_001414178.1| NusB antitermination factor [Parvibaculum lavamentivorans DS-1]
 gi|154157304|gb|ABS64521.1| NusB antitermination factor [Parvibaculum lavamentivorans DS-1]
          Length = 171

 Score =  112 bits (279), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 56/135 (41%), Positives = 83/135 (61%), Gaps = 3/135 (2%)

Query: 21  LAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRK 80
           L AVQALYQ+DI      E++ E+  +R     E + ++     D   F  ++ GV+  +
Sbjct: 24  LFAVQALYQMDIAATPLDEVVEEFVEHRL---EEPEGDNEIFAADKVHFEDVVRGVVREQ 80

Query: 81  QHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYG 140
           + +D+ ++S L + WS +RLD  L +ILR G  EL  C  VP++V+I+EYV IAH FF G
Sbjct: 81  RELDVQVNSALAKGWSLARLDATLRAILRCGTYELRRCKDVPLKVVINEYVEIAHAFFEG 140

Query: 141 DEPKFINAVLDKVSR 155
           DEP  +NAVLD++ R
Sbjct: 141 DEPGVVNAVLDRLGR 155


>gi|170750376|ref|YP_001756636.1| NusB antitermination factor [Methylobacterium radiotolerans JCM
           2831]
 gi|170656898|gb|ACB25953.1| NusB antitermination factor [Methylobacterium radiotolerans JCM
           2831]
          Length = 197

 Score =  110 bits (276), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 62/157 (39%), Positives = 93/157 (59%), Gaps = 7/157 (4%)

Query: 11  KLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFR 70
           K+S R G ARLA VQALY++DI G    + ++E+E   F    E+D    +   +  +FR
Sbjct: 21  KISPRSG-ARLAVVQALYEMDISGKGVLDALAEFEA--FWIGQEVD-GIAHPPAETAFFR 76

Query: 71  VIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEY 130
            ++ G ++ ++ ID  +   L + W   R++++L +ILRAG  EL+    VP    ISEY
Sbjct: 77  DLLRGTVEEQRAIDPKLDQALAQGWPLRRIEIVLRAILRAGAYELMFRRDVPAAAAISEY 136

Query: 131 VCIAHDFFYGDEPKFINAVLDKVSRKEEIKRSGCVSA 167
           V +AH F+  DEP  +NAVLD+V+R  E+ R G V A
Sbjct: 137 VDVAHSFYTADEPGLVNAVLDRVAR--EV-RPGEVGA 170


>gi|23012491|ref|ZP_00052562.1| COG0781: Transcription termination factor [Magnetospirillum
           magnetotacticum MS-1]
          Length = 169

 Score =  110 bits (275), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 60/166 (36%), Positives = 94/166 (56%), Gaps = 4/166 (2%)

Query: 5   DNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHV 64
           D     K + R G ARLA VQALY+++I      + ++E+E   F    E+D   V+   
Sbjct: 6   DTPAQPKTNTRTG-ARLAVVQALYEMEISDKGVIDALAEFEA--FWIGQEID-GVVHPPA 61

Query: 65  DLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVE 124
           +  +FR ++ G ++ ++ ID  + + L + W   RL+++L +ILRAG  EL+    VP  
Sbjct: 62  ETAFFRDVLRGAVEEQRAIDPKLDAALAKGWPLRRLEVVLRAILRAGAYELMFRKDVPAR 121

Query: 125 VIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRSGCVSAITQ 170
             ISEYV +AH F+ GDEP  +NAVLD+V R+      G  +A ++
Sbjct: 122 AAISEYVDVAHSFYGGDEPGMVNAVLDRVGREVRSTEFGIPAAPSK 167


>gi|296284343|ref|ZP_06862341.1| transcription termination factor [Citromicrobium bathyomarinum
           JL354]
          Length = 153

 Score =  110 bits (274), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 58/143 (40%), Positives = 80/143 (55%), Gaps = 3/143 (2%)

Query: 13  SHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVI 72
           S  R  ARLAAVQALYQ D+ G    +++ E+  +R   + E D    Y   ++ +F  I
Sbjct: 8   STARSAARLAAVQALYQQDMEGTKLPKLLDEFHQHRLGREIEGDT---YADAEVPFFDDI 64

Query: 73  IHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVC 132
           + GV  R++ IDL +S  L + WS  RLD  +  +LR G  ELI    +P   +ISEYV 
Sbjct: 65  VRGVDARREEIDLQLSEKLAQGWSLKRLDKTMLQVLRCGTYELIARADIPTGAVISEYVD 124

Query: 133 IAHDFFYGDEPKFINAVLDKVSR 155
           +A  FF   E KF N VLD V++
Sbjct: 125 VAKAFFDDREAKFANGVLDAVAK 147


>gi|296115207|ref|ZP_06833848.1| NusB antitermination factor [Gluconacetobacter hansenii ATCC 23769]
 gi|295978308|gb|EFG85045.1| NusB antitermination factor [Gluconacetobacter hansenii ATCC 23769]
          Length = 183

 Score =  110 bits (274), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 56/152 (36%), Positives = 84/152 (55%), Gaps = 4/152 (2%)

Query: 7   KKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRF-CADTELD-VESVYLHV 64
           +KD   S  R  +R+ AVQAL+QI+  G +   ++S++  +R     T L   E      
Sbjct: 14  RKDRNRS--RTASRVGAVQALFQIEQGGDNAENVVSQFTHHRLPTGKTSLGYAEGQVPDA 71

Query: 65  DLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVE 124
           D+  F  I+ G + R+  ID +++  L   W   RLD +L ++LRA   EL      P  
Sbjct: 72  DIRLFTAIVRGSVARQADIDAMVADVLPASWPMDRLDPVLRALLRAAGGELTAQDPAPSR 131

Query: 125 VIISEYVCIAHDFFYGDEPKFINAVLDKVSRK 156
           VII+EY+ +AH FF GDEP+ +N VLD +SR+
Sbjct: 132 VIINEYMDVAHGFFSGDEPRMLNGVLDAMSRR 163


>gi|162147540|ref|YP_001602001.1| N utilization substance protein B-like protein [Gluconacetobacter
           diazotrophicus PAl 5]
 gi|209545645|ref|YP_002277874.1| NusB antitermination factor [Gluconacetobacter diazotrophicus PAl
           5]
 gi|161786117|emb|CAP55699.1| N utilization substance protein B homolog [Gluconacetobacter
           diazotrophicus PAl 5]
 gi|209533322|gb|ACI53259.1| NusB antitermination factor [Gluconacetobacter diazotrophicus PAl
           5]
          Length = 183

 Score =  110 bits (274), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 56/159 (35%), Positives = 83/159 (52%), Gaps = 5/159 (3%)

Query: 3   IQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVY- 61
           I D+ +       R  +R+A VQAL+QI+  G +   +I+++  +R    +  D    Y 
Sbjct: 4   IPDDDRTHSKPRSRTASRVAVVQALFQIEQAGDTPDTVIAQFLRHRLGTASGADQGEEYE 63

Query: 62  ----LHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIE 117
                  D+  F  +    + R++ ID LI   L   W   RLD +L ++LRA   EL  
Sbjct: 64  DGRVPEADIRLFEQVARAAVARREQIDALIVEVLPPSWPVGRLDPVLRALLRAAGAELAA 123

Query: 118 CHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRK 156
              VP  VII+EY+ IAH FF GDEPK +N VLD ++R+
Sbjct: 124 TGGVPTRVIINEYLDIAHGFFSGDEPKMVNGVLDTLARR 162


>gi|197105131|ref|YP_002130508.1| N utilization substance protein B [Phenylobacterium zucineum HLK1]
 gi|196478551|gb|ACG78079.1| N utilization substance protein B [Phenylobacterium zucineum HLK1]
          Length = 149

 Score =  110 bits (274), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 56/140 (40%), Positives = 77/140 (55%), Gaps = 3/140 (2%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           R +ARLAAVQALYQ+++       +I E+  +RF  D E +        D  +F  ++ G
Sbjct: 8   RSVARLAAVQALYQMEVSSTGVEAVIREFSDHRFDRDVEGET---LASADEAFFADLVRG 64

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
           V+  ++ ID  I   L + W   RLD  + +ILRAG  EL+    VP EV I EYV +  
Sbjct: 65  VVREQKPIDAAIVKRLAQGWRLERLDATVRAILRAGAFELMHRSDVPTEVAIDEYVELTK 124

Query: 136 DFFYGDEPKFINAVLDKVSR 155
            FF G EP F+N  LD V+R
Sbjct: 125 SFFEGPEPGFVNGALDGVAR 144


>gi|126463172|ref|YP_001044286.1| NusB antitermination factor [Rhodobacter sphaeroides ATCC 17029]
 gi|221640214|ref|YP_002526476.1| NusB antitermination factor [Rhodobacter sphaeroides KD131]
 gi|126104836|gb|ABN77514.1| NusB antitermination factor [Rhodobacter sphaeroides ATCC 17029]
 gi|221160995|gb|ACM01975.1| NusB antitermination factor [Rhodobacter sphaeroides KD131]
          Length = 157

 Score =  109 bits (273), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 57/157 (36%), Positives = 95/157 (60%), Gaps = 10/157 (6%)

Query: 1   MTIQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESV 60
           M+++ +++ +K +     +RL AVQAL+Q++  G +  ++  E+ET+RF A  E D    
Sbjct: 1   MSVKPDRRQMKSA-----SRLYAVQALFQMETTGQTVEQVAREFETHRFGAVYEGDE--- 52

Query: 61  YLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHS 120
               D + FR I+ G ++R+  ID +    L  KW   R+D ++ ++ RA   EL+E  +
Sbjct: 53  MAEGDAKSFRAIVSGAVNRQAGIDQMTDRALVAKWPIDRIDPVIRALFRAAGSELLESET 112

Query: 121 VPVEVIISEYVCIAHDFFY-GDEPKFINAVLDKVSRK 156
            P +V+I+E+V IA  FF  G EPKF+NAVLD ++R+
Sbjct: 113 -PPKVVINEFVDIAKAFFPEGREPKFVNAVLDHMARE 148


>gi|114570081|ref|YP_756761.1| transcription antitermination protein NusB [Maricaulis maris MCS10]
 gi|119390782|sp|Q0APG4|NUSB_MARMM RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|114340543|gb|ABI65823.1| NusB antitermination factor [Maricaulis maris MCS10]
          Length = 160

 Score =  109 bits (273), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 52/134 (38%), Positives = 81/134 (60%), Gaps = 3/134 (2%)

Query: 22  AAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQ 81
           +AVQALYQ++I G   + +I E+  +RF A  E      ++  D ++F  ++ GV++R+ 
Sbjct: 23  SAVQALYQMEIGGLGASAVIREFREHRFGACGEA---PEFVEADEDFFESLVAGVVERQA 79

Query: 82  HIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGD 141
            +D  + + L +KW   RLD  + +ILR G  EL+    VP  V+I EY+ +A+ FF G 
Sbjct: 80  DVDPAMDALLADKWRLERLDATVRAILRVGGFELLYRKDVPARVVIDEYIEVANAFFEGA 139

Query: 142 EPKFINAVLDKVSR 155
           EPKFINA  D+ +R
Sbjct: 140 EPKFINAAFDRCAR 153


>gi|170744825|ref|YP_001773480.1| NusB antitermination factor [Methylobacterium sp. 4-46]
 gi|168199099|gb|ACA21046.1| NusB antitermination factor [Methylobacterium sp. 4-46]
          Length = 156

 Score =  109 bits (272), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 57/146 (39%), Positives = 89/146 (60%), Gaps = 4/146 (2%)

Query: 10  LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF 69
           +K + R G ARLA VQALY+++I G    + ++E+E + +       +E  +   +  +F
Sbjct: 1   MKPAERSG-ARLAVVQALYEMEISGKGVIDALAEFEAF-WIGQVVDGIE--HPPAETAFF 56

Query: 70  RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISE 129
           R ++ G ++ ++ ID  +   L+  W   R++ +L +ILRAG  E+I    VPV V ISE
Sbjct: 57  RDVLRGAVEEQRLIDQRLDGALSAGWPLRRIEAVLRAILRAGAYEVIFRKDVPVRVAISE 116

Query: 130 YVCIAHDFFYGDEPKFINAVLDKVSR 155
           YV +AH F+ GDEP  +NAVLDKV+R
Sbjct: 117 YVDVAHSFYGGDEPGLVNAVLDKVAR 142


>gi|154248201|ref|YP_001419159.1| NusB antitermination factor [Xanthobacter autotrophicus Py2]
 gi|154162286|gb|ABS69502.1| NusB antitermination factor [Xanthobacter autotrophicus Py2]
          Length = 163

 Score =  109 bits (272), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 54/149 (36%), Positives = 89/149 (59%), Gaps = 6/149 (4%)

Query: 15  RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74
           ++  ARL AVQALYQ+D+      +I++E+E++    + E  VE  +   D+  FR ++ 
Sbjct: 16  KKSAARLGAVQALYQMDLAQTPLNDILAEFESHWLGQEVE-GVE--FPEADVRLFRTVVE 72

Query: 75  GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134
           GV++ ++ ID ++ + LT+ W   R++ +L ++LRAG  EL     VP  V+I+EYV +A
Sbjct: 73  GVLNDQRRIDPMVDNALTKGWPLKRVEAVLRAVLRAGAFELSAKPDVPARVVITEYVNVA 132

Query: 135 HDFFYGDEPKFINAVLDKVS---RKEEIK 160
             F   DE   +NAVLD ++   R +E K
Sbjct: 133 GAFLDRDETGMVNAVLDALAHDLRPDEFK 161


>gi|220927277|ref|YP_002502579.1| NusB antitermination factor [Methylobacterium nodulans ORS 2060]
 gi|219951884|gb|ACL62276.1| NusB antitermination factor [Methylobacterium nodulans ORS 2060]
          Length = 156

 Score =  108 bits (271), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 57/146 (39%), Positives = 89/146 (60%), Gaps = 4/146 (2%)

Query: 10  LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF 69
           +K + R G ARLA VQALY+++I G    + ++E+E + +       +E  +   +  +F
Sbjct: 1   MKPAERSG-ARLAVVQALYEMEISGKGVIDALAEFEAF-WIGQVVDGIE--HPPAETAFF 56

Query: 70  RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISE 129
           R ++ G ++ ++ ID  +   L+  W   R++ +L +ILRAG  E+I    VPV V ISE
Sbjct: 57  RDVLRGAVEEQRVIDQRLDGALSAGWPLRRVEAVLRAILRAGAYEVIFRKDVPVRVAISE 116

Query: 130 YVCIAHDFFYGDEPKFINAVLDKVSR 155
           YV +AH F+ GDEP  +NAVLDKV+R
Sbjct: 117 YVDVAHSFYGGDEPGLVNAVLDKVAR 142


>gi|83858229|ref|ZP_00951751.1| transcription antitermination protein NusB [Oceanicaulis alexandrii
           HTCC2633]
 gi|83853052|gb|EAP90904.1| transcription antitermination protein NusB [Oceanicaulis alexandrii
           HTCC2633]
          Length = 158

 Score =  108 bits (269), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 52/133 (39%), Positives = 78/133 (58%), Gaps = 3/133 (2%)

Query: 24  VQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHI 83
           VQALYQ++  G     ++ E+  +RF  + E      Y+  D ++F  ++ G++  +  +
Sbjct: 25  VQALYQMETSGSGAKAVVKEFRDHRFGYEDE---PGDYVETDEDFFENLVTGIVSIQADV 81

Query: 84  DLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEP 143
           D  IS  L E W  SRLD  + +ILRAG  ELI    VP  V+I+EYV +AH FF G EP
Sbjct: 82  DKRISGVLKEGWKLSRLDATVRAILRAGGYELIARKDVPPAVVINEYVDVAHAFFEGTEP 141

Query: 144 KFINAVLDKVSRK 156
            F+NA LD ++++
Sbjct: 142 GFVNATLDALAKQ 154


>gi|16125609|ref|NP_420173.1| transcription antitermination protein NusB [Caulobacter crescentus
           CB15]
 gi|221234359|ref|YP_002516795.1| transcription antitermination protein NusB [Caulobacter crescentus
           NA1000]
 gi|22095966|sp|Q9A8J3|NUSB_CAUCR RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|254772622|sp|B8H535|NUSB_CAUCN RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|13422711|gb|AAK23341.1| N utilization substance protein B [Caulobacter crescentus CB15]
 gi|220963531|gb|ACL94887.1| N utilization substance protein B [Caulobacter crescentus NA1000]
          Length = 149

 Score =  108 bits (269), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 59/141 (41%), Positives = 78/141 (55%), Gaps = 5/141 (3%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHV-DLEWFRVIIH 74
           R +ARLAAVQALYQ+++ G     +I E+  +RF    + DVE   L   D  +F  +  
Sbjct: 9   RSVARLAAVQALYQMEVSGAGVDSVIREFGEHRF----DRDVEGEQLAAADETFFADLAR 64

Query: 75  GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134
           GV+  +  ID  I   L   W   RLD    ++LRAG  EL+    VP EV+I+EYV IA
Sbjct: 65  GVVTNQAKIDQGIVKRLASGWRLERLDATARAVLRAGAFELMYRSDVPTEVVINEYVEIA 124

Query: 135 HDFFYGDEPKFINAVLDKVSR 155
             FF G E  FIN  LD ++R
Sbjct: 125 KSFFEGPESGFINGALDAIAR 145


>gi|260753881|ref|YP_003226774.1| NusB antitermination factor [Zymomonas mobilis subsp. mobilis NCIMB
           11163]
 gi|258553244|gb|ACV76190.1| NusB antitermination factor [Zymomonas mobilis subsp. mobilis NCIMB
           11163]
          Length = 157

 Score =  108 bits (269), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 59/148 (39%), Positives = 84/148 (56%), Gaps = 5/148 (3%)

Query: 11  KLSHR--RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEW 68
           K  H+  R  ARLAAVQALYQ ++       ++ E+  YR  A  E   ++ Y   +  +
Sbjct: 6   KRPHKNARSAARLAAVQALYQREMEKTPLNILLDEFHQYRLGATIE---DATYTKAEPSF 62

Query: 69  FRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIIS 128
           F  I+ GV  R + ID +IS  L+E+WS  RLD  +  ILRAG  EL+    VP   IIS
Sbjct: 63  FDDIVRGVGTRCEEIDRVISENLSERWSLDRLDRPMRQILRAGTYELLARPDVPTATIIS 122

Query: 129 EYVCIAHDFFYGDEPKFINAVLDKVSRK 156
           EY+ +A+ F+   E  F+N +LD V++K
Sbjct: 123 EYIDVANAFYDRQEKNFVNGLLDTVAKK 150


>gi|103487508|ref|YP_617069.1| NusB antitermination factor [Sphingopyxis alaskensis RB2256]
 gi|119390826|sp|Q1GRI6|NUSB_SPHAL RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|98977585|gb|ABF53736.1| NusB antitermination factor [Sphingopyxis alaskensis RB2256]
          Length = 149

 Score =  108 bits (269), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 59/145 (40%), Positives = 81/145 (55%), Gaps = 3/145 (2%)

Query: 11  KLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFR 70
           K +  R  ARLAAVQALYQ ++      ++I E+  +R  A  E D E  Y   D+ +F 
Sbjct: 3   KRAQSRSAARLAAVQALYQHEMEATPVAQLIHEFHQHRIGAIIE-DAE--YADADVPFFD 59

Query: 71  VIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEY 130
            I+ GV+ R   ID  I++ L   W+  RLD  + +ILRAG  ELI    VPV  ++SEY
Sbjct: 60  DIVKGVLARADEIDAAITARLASGWTMERLDRTMKAILRAGTYELIARGDVPVGAVVSEY 119

Query: 131 VCIAHDFFYGDEPKFINAVLDKVSR 155
           V +A  FF G E  F N +LD + +
Sbjct: 120 VDVAKAFFDGREAGFANGLLDAIGK 144


>gi|326386550|ref|ZP_08208172.1| NusB antitermination factor [Novosphingobium nitrogenifigens DSM
           19370]
 gi|326208865|gb|EGD59660.1| NusB antitermination factor [Novosphingobium nitrogenifigens DSM
           19370]
          Length = 148

 Score =  108 bits (269), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 56/140 (40%), Positives = 84/140 (60%), Gaps = 3/140 (2%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           R  ARLAAVQALYQ+++     T ++ E+  +R   + E DVE  YL  D+ +F  ++ G
Sbjct: 9   RSAARLAAVQALYQLEMEQPELTTLLDEFHRHRLGREIE-DVE--YLDADVAFFDDVVKG 65

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
           V+ R+  ID  ++  L + WS SRLD  +  ILRAG  EL+    + V  +I EY+ +AH
Sbjct: 66  VVARRDEIDAKLTERLAQGWSLSRLDKTMLQILRAGTYELLARSDIGVGTVIDEYLDVAH 125

Query: 136 DFFYGDEPKFINAVLDKVSR 155
            FF   E KF+N +LD +++
Sbjct: 126 AFFDAREAKFVNGLLDALAK 145


>gi|302383000|ref|YP_003818823.1| NusB antitermination factor [Brevundimonas subvibrioides ATCC
           15264]
 gi|302193628|gb|ADL01200.1| NusB antitermination factor [Brevundimonas subvibrioides ATCC
           15264]
          Length = 176

 Score =  108 bits (269), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 56/140 (40%), Positives = 80/140 (57%), Gaps = 3/140 (2%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           R +ARLAAVQALYQ+++ G     +I+E+  +RF AD E +        D  +F  ++ G
Sbjct: 34  RTVARLAAVQALYQMELAGEGVETVITEFSNHRFDADIEGEP---LAEADEAYFADVVRG 90

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
           V+  ++ ID  + + L   W   RLD  L ++LR G  EL     VP E++I EYV +A 
Sbjct: 91  VIQSQREIDASVKARLASNWRLERLDATLRALLRCGAWELAHRTDVPKEIVIDEYVELAK 150

Query: 136 DFFYGDEPKFINAVLDKVSR 155
            FF   E KF+NA LD V+R
Sbjct: 151 AFFDEAEAKFVNAALDGVAR 170


>gi|241761517|ref|ZP_04759604.1| NusB antitermination factor [Zymomonas mobilis subsp. mobilis ATCC
           10988]
 gi|283856498|ref|YP_163287.2| NusB antitermination factor [Zymomonas mobilis subsp. mobilis ZM4]
 gi|241373825|gb|EER63358.1| NusB antitermination factor [Zymomonas mobilis subsp. mobilis ATCC
           10988]
 gi|283775502|gb|AAV90176.2| NusB antitermination factor [Zymomonas mobilis subsp. mobilis ZM4]
          Length = 157

 Score =  107 bits (268), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 58/148 (39%), Positives = 84/148 (56%), Gaps = 5/148 (3%)

Query: 11  KLSHR--RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEW 68
           K  H+  R  ARLAAVQALYQ ++       ++ E+  YR  A  E   ++ Y   +  +
Sbjct: 6   KRPHKNARSAARLAAVQALYQREMEKTPLNILLDEFHQYRLGATIE---DATYTKAEPSF 62

Query: 69  FRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIIS 128
           F  I+ GV  R + ID +IS  L+E+WS  RLD  +  ILRAG  EL+    VP   +IS
Sbjct: 63  FDDIVRGVGTRCEEIDRVISENLSERWSLDRLDRPMRQILRAGTYELLARPDVPTATVIS 122

Query: 129 EYVCIAHDFFYGDEPKFINAVLDKVSRK 156
           EY+ +A+ F+   E  F+N +LD V++K
Sbjct: 123 EYIDVANAFYDRQEKNFVNGLLDTVAKK 150


>gi|85707944|ref|ZP_01039010.1| transcription termination factor [Erythrobacter sp. NAP1]
 gi|85689478|gb|EAQ29481.1| transcription termination factor [Erythrobacter sp. NAP1]
          Length = 155

 Score =  107 bits (267), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 58/148 (39%), Positives = 85/148 (57%), Gaps = 6/148 (4%)

Query: 13  SHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVES----VYLHVDLEW 68
           S  R  ARLAAVQALYQ  + G +  +++ E+  +R     E+D E     VY   ++E+
Sbjct: 7   SQARSTARLAAVQALYQQQMEGTALNKLLDEFHQHRLG--REVDDEDHEGEVYADAEVEF 64

Query: 69  FRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIIS 128
           F  I+ GV  R+  ID ++++ L + W+  RLD  +  ILRAG  ELI    VP    I+
Sbjct: 65  FDDIVRGVDARRDEIDEILTARLAQGWTLMRLDKTMLQILRAGAYELIARADVPRASAIT 124

Query: 129 EYVCIAHDFFYGDEPKFINAVLDKVSRK 156
           EYV +A  FF   E KF+N +LD V+++
Sbjct: 125 EYVDVAKAFFDDREAKFVNGILDAVAKE 152


>gi|296448765|ref|ZP_06890618.1| NusB antitermination factor [Methylosinus trichosporium OB3b]
 gi|296253723|gb|EFH00897.1| NusB antitermination factor [Methylosinus trichosporium OB3b]
          Length = 152

 Score =  107 bits (266), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 56/141 (39%), Positives = 83/141 (58%), Gaps = 3/141 (2%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           R  +RLA VQALYQ+++ G    EI +E+E +    + E D    Y   +L++FR I+ G
Sbjct: 6   RSASRLAIVQALYQMEVAGKGLNEIYAEFEVHWIGREIEGDQ---YKPAELQFFRDIVKG 62

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
           V+D +  ID  +   L   W   R++ ++ +ILRAG  EL     VPV+V+I EYV +A 
Sbjct: 63  VLDNQTPIDRALDQALQGGWPLQRIESVMRAILRAGAYELGFRRDVPVKVVIKEYVDVAG 122

Query: 136 DFFYGDEPKFINAVLDKVSRK 156
            FF   E   INAVLD+++R+
Sbjct: 123 AFFGPTESGMINAVLDRLARQ 143


>gi|163852577|ref|YP_001640620.1| transcription antitermination factor NusB [Methylobacterium
           extorquens PA1]
 gi|218531417|ref|YP_002422233.1| NusB antitermination factor [Methylobacterium chloromethanicum CM4]
 gi|240139911|ref|YP_002964388.1| transcription antitermination factor [Methylobacterium extorquens
           AM1]
 gi|254562335|ref|YP_003069430.1| transcription antitermination factor [Methylobacterium extorquens
           DM4]
 gi|163664182|gb|ABY31549.1| transcription antitermination factor NusB [Methylobacterium
           extorquens PA1]
 gi|218523720|gb|ACK84305.1| NusB antitermination factor [Methylobacterium chloromethanicum CM4]
 gi|240009885|gb|ACS41111.1| transcription antitermination factor [Methylobacterium extorquens
           AM1]
 gi|254269613|emb|CAX25584.1| transcription antitermination factor [Methylobacterium extorquens
           DM4]
          Length = 171

 Score =  107 bits (266), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 56/146 (38%), Positives = 88/146 (60%), Gaps = 4/146 (2%)

Query: 11  KLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFR 70
           K + R G ARLA VQALY+++I      E ++E+E   F    E+D   V+   ++ +FR
Sbjct: 12  KPNARTG-ARLAVVQALYEMEISDKGVIEALAEFEA--FWIGQEVD-GVVHPPAEIAFFR 67

Query: 71  VIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEY 130
            ++ G ++ ++ ID  + + L + W   RL+ +L +ILRAG  EL+    VP    IS+Y
Sbjct: 68  DVLRGAVEEQRAIDPKLDTALAKGWPLRRLEAVLRAILRAGAYELMFRRDVPARAAISQY 127

Query: 131 VCIAHDFFYGDEPKFINAVLDKVSRK 156
           V +A+ F+ GDEP  +NAVLD+V R+
Sbjct: 128 VEVAYSFYGGDEPGMVNAVLDRVGRE 153


>gi|146276474|ref|YP_001166633.1| NusB antitermination factor [Rhodobacter sphaeroides ATCC 17025]
 gi|145554715|gb|ABP69328.1| NusB antitermination factor [Rhodobacter sphaeroides ATCC 17025]
          Length = 157

 Score =  107 bits (266), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 59/157 (37%), Positives = 94/157 (59%), Gaps = 10/157 (6%)

Query: 1   MTIQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESV 60
           M+++ +K+ +K +     +RL AVQAL+Q++  G +  ++  E+ET+RF A  E D    
Sbjct: 1   MSVKPDKRQMKSA-----SRLYAVQALFQMECSGQTVEQVAREFETHRFGAIYEGDE--- 52

Query: 61  YLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHS 120
               D   FR I+ G ++R+  ID L    L  KW   R+D ++ ++ RA   EL+E  +
Sbjct: 53  MAEGDARSFRSIVSGAVNRQAGIDQLTDRALVAKWPIDRIDPVIRALFRAAGSELLESDT 112

Query: 121 VPVEVIISEYVCIAHDFFY-GDEPKFINAVLDKVSRK 156
            P +V+I+E+V IA  FF  G EPKF+NAVLD ++R+
Sbjct: 113 -PPKVVINEFVDIAKAFFPDGREPKFVNAVLDHMARE 148


>gi|188582598|ref|YP_001926043.1| NusB antitermination factor [Methylobacterium populi BJ001]
 gi|179346096|gb|ACB81508.1| NusB antitermination factor [Methylobacterium populi BJ001]
          Length = 172

 Score =  106 bits (265), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 56/146 (38%), Positives = 88/146 (60%), Gaps = 4/146 (2%)

Query: 11  KLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFR 70
           K + R G ARLA VQALY+++I      + ++E+E   F    E+D   V+   +  +FR
Sbjct: 16  KPNTRTG-ARLAVVQALYEMEISDKGVIDALAEFEA--FWIGQEID-GVVHPPAETAFFR 71

Query: 71  VIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEY 130
            ++ G ++ ++ ID  + + L + W   RL+++L +ILRAG  EL+    VP    IS+Y
Sbjct: 72  DVLRGAVEEQRAIDPKLDAALAKGWPLRRLEVVLRAILRAGAYELMFRRDVPARAAISQY 131

Query: 131 VCIAHDFFYGDEPKFINAVLDKVSRK 156
           V +AH F+ GDEP  +NAVLD+V R+
Sbjct: 132 VDVAHSFYGGDEPGMVNAVLDRVGRE 157


>gi|77464330|ref|YP_353834.1| NusB antitermination factor [Rhodobacter sphaeroides 2.4.1]
 gi|77388748|gb|ABA79933.1| NusB antitermination factor [Rhodobacter sphaeroides 2.4.1]
          Length = 155

 Score =  106 bits (265), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 55/142 (38%), Positives = 86/142 (60%), Gaps = 5/142 (3%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           +  +RL AVQAL+Q++  G +  ++  E+ET+RF A  E D        D + FR I+ G
Sbjct: 9   KSASRLYAVQALFQMETTGQTVEQVAREFETHRFGAVYEGDE---MAEGDAKSFRAIVSG 65

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
            ++R+  ID +    L  KW   R+D ++ ++ RA   EL+E  + P +V+I+E+V IA 
Sbjct: 66  AVNRQAGIDQMTDRALVAKWPIDRIDPVIRALFRAAGSELLESET-PPKVVINEFVDIAK 124

Query: 136 DFFY-GDEPKFINAVLDKVSRK 156
            FF  G EPKF+NAVLD ++R+
Sbjct: 125 AFFPEGREPKFVNAVLDHMARE 146


>gi|332559221|ref|ZP_08413543.1| NusB antitermination factor [Rhodobacter sphaeroides WS8N]
 gi|332276933|gb|EGJ22248.1| NusB antitermination factor [Rhodobacter sphaeroides WS8N]
          Length = 148

 Score =  106 bits (265), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 55/142 (38%), Positives = 86/142 (60%), Gaps = 5/142 (3%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           +  +RL AVQAL+Q++  G +  ++  E+ET+RF A  E D        D + FR I+ G
Sbjct: 2   KSASRLYAVQALFQMETTGQTVEQVAREFETHRFGAVYEGDE---MAEGDAKSFRAIVSG 58

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
            ++R+  ID +    L  KW   R+D ++ ++ RA   EL+E  + P +V+I+E+V IA 
Sbjct: 59  AVNRQAGIDQMTDRALVAKWPIDRIDPVIRALFRAAGSELLESET-PPKVVINEFVDIAK 117

Query: 136 DFFY-GDEPKFINAVLDKVSRK 156
            FF  G EPKF+NAVLD ++R+
Sbjct: 118 AFFPEGREPKFVNAVLDHMARE 139


>gi|295689070|ref|YP_003592763.1| Nusb antitermination factor [Caulobacter segnis ATCC 21756]
 gi|295430973|gb|ADG10145.1| NusB antitermination factor [Caulobacter segnis ATCC 21756]
          Length = 149

 Score =  105 bits (263), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 57/144 (39%), Positives = 79/144 (54%), Gaps = 5/144 (3%)

Query: 13  SHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHV-DLEWFRV 71
           +  R +ARLAA+QALYQ+++ G     +I E+  +RF    + DVE   L   D  +F  
Sbjct: 6   TQPRSVARLAAIQALYQMEVSGAGVDSVIREFSEHRF----DRDVEGERLAAADETFFAE 61

Query: 72  IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
           +  GV+  +  +D  I   L   W   RLD    ++LRAG  EL+    VP EV+I+EYV
Sbjct: 62  LAKGVVAHQAKVDQGIVKRLASGWRLERLDATARAVLRAGAYELMYRPDVPTEVVINEYV 121

Query: 132 CIAHDFFYGDEPKFINAVLDKVSR 155
            IA  FF G E  FIN  LD ++R
Sbjct: 122 EIAKSFFEGPEAGFINGALDAIAR 145


>gi|209964638|ref|YP_002297553.1| transcription antitermination protein NusB, putative
           [Rhodospirillum centenum SW]
 gi|209958104|gb|ACI98740.1| transcription antitermination protein NusB, putative
           [Rhodospirillum centenum SW]
          Length = 179

 Score =  105 bits (263), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 48/133 (36%), Positives = 78/133 (58%), Gaps = 3/133 (2%)

Query: 24  VQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHI 83
           VQALYQI++ G  +   I E+  +R   + + D    Y+  D + F  I+ GVM R+  +
Sbjct: 37  VQALYQIELGGTPSETAIGEFVRHRLGQEIDGDR---YVSADPQLFADIVRGVMARQADV 93

Query: 84  DLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEP 143
           D L++  L  +W   R++ IL +ILRAG  EL+    V   ++I++Y+ + H FF G EP
Sbjct: 94  DQLVTGVLDRQWGLDRMEPILRAILRAGAWELLGNTGVAPHIVINDYIDVGHAFFAGREP 153

Query: 144 KFINAVLDKVSRK 156
             +N VLD+++R+
Sbjct: 154 GMVNGVLDRIARQ 166


>gi|300022490|ref|YP_003755101.1| NusB antitermination factor [Hyphomicrobium denitrificans ATCC
           51888]
 gi|299524311|gb|ADJ22780.1| NusB antitermination factor [Hyphomicrobium denitrificans ATCC
           51888]
          Length = 170

 Score =  105 bits (261), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 52/133 (39%), Positives = 78/133 (58%), Gaps = 3/133 (2%)

Query: 24  VQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHI 83
           VQALYQ+D+ G    ++I+E+   R   D     + +    D  +F  I+  V+ R++ I
Sbjct: 23  VQALYQMDMAGTDLNDVIAEFLNERLSGDNR---DEMLAGADRVFFADILRAVVRRQREI 79

Query: 84  DLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEP 143
           D +I   L   W   R+D IL +ILR GV EL++ + VP  V ISEYV +A  FF  +EP
Sbjct: 80  DPMIDEQLAVGWRLVRVDSILRAILRGGVAELVDRYDVPARVAISEYVNVARVFFDEEEP 139

Query: 144 KFINAVLDKVSRK 156
           + +N VLDK++R+
Sbjct: 140 RVVNGVLDKLARR 152


>gi|254293744|ref|YP_003059767.1| NusB antitermination factor [Hirschia baltica ATCC 49814]
 gi|254042275|gb|ACT59070.1| NusB antitermination factor [Hirschia baltica ATCC 49814]
          Length = 163

 Score =  105 bits (261), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 65/159 (40%), Positives = 92/159 (57%), Gaps = 10/159 (6%)

Query: 4   QDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADT-ELDVESVYL 62
           +D  + L+   R G ARLAAVQALYQI+  G +   +I +Y     C D   LD E   +
Sbjct: 9   KDAARKLRKLSRSG-ARLAAVQALYQIEQTGRAGRAVIEDY-----CEDGIGLDDEGRPI 62

Query: 63  HV-DLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSV 121
              D E FR  + GV++    I+L I   L + W   RLD    +ILRAGV EL++   +
Sbjct: 63  EAADPEIFRNTVEGVIESLDDINLAIVKRLADGWKIERLDATSRAILRAGVYELMKRDDL 122

Query: 122 PVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIK 160
           P ++I+ EYV IAH FF   EP+FINA+L+ V  +E+++
Sbjct: 123 PAQIILDEYVSIAHAFFDDAEPRFINALLENV--REDVR 159


>gi|304320998|ref|YP_003854641.1| transcription antitermination protein NusB [Parvularcula
           bermudensis HTCC2503]
 gi|303299900|gb|ADM09499.1| transcription antitermination protein NusB [Parvularcula
           bermudensis HTCC2503]
          Length = 166

 Score =  104 bits (260), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 55/141 (39%), Positives = 85/141 (60%), Gaps = 5/141 (3%)

Query: 18  IARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVM 77
           +ARL AVQALYQ++  G     +I E+  +R     E+D  +++   D E+F  I+ GV+
Sbjct: 18  MARLGAVQALYQMEHAGTGVEAVIREFVDHRLGG--EMDGSALH-EADDEFFAAIVRGVV 74

Query: 78  DRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDF 137
           + ++ ID  I   L E W+  RLD    +ILRAG+ EL+    +P   ++ EYV +A+ F
Sbjct: 75  EGQRRIDPFIQRHLAEGWTLKRLDATARAILRAGLFELVSRPDIPWRTVVDEYVELANSF 134

Query: 138 F-YGD-EPKFINAVLDKVSRK 156
           F  G+ EP+FINAVLD  +++
Sbjct: 135 FEKGEAEPRFINAVLDATAKE 155


>gi|99081967|ref|YP_614121.1| NusB antitermination factor [Ruegeria sp. TM1040]
 gi|99038247|gb|ABF64859.1| NusB antitermination factor [Ruegeria sp. TM1040]
          Length = 160

 Score =  104 bits (260), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 61/158 (38%), Positives = 91/158 (57%), Gaps = 6/158 (3%)

Query: 1   MTIQDNKKDLK-LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVES 59
           MT +D  K  K  +  R  ARL AVQAL+Q++    ST ++I E+E +RF A  E D   
Sbjct: 1   MTSKDAPKPGKNKTQARSAARLYAVQALFQMEQSDQSTNKVIVEFEDHRFGATYEGD--- 57

Query: 60  VYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECH 119
            Y   D + FR +++  ++ +  ID +    L  KW  +R+D  L ++ RA   E +E  
Sbjct: 58  EYAEGDTKLFRQLVNDAVNHQAKIDQMTDRALVAKWPIARIDPTLRALFRAAGAEFVESD 117

Query: 120 SVPVEVIISEYVCIAHDFFY-GDEPKFINAVLDKVSRK 156
           + PV+V+I+EYV IA  FF  G E  F+NAVLD ++R+
Sbjct: 118 T-PVKVVINEYVDIARAFFPEGREASFVNAVLDHMARE 154


>gi|94496077|ref|ZP_01302655.1| NusB antitermination factor [Sphingomonas sp. SKA58]
 gi|94424256|gb|EAT09279.1| NusB antitermination factor [Sphingomonas sp. SKA58]
          Length = 148

 Score =  104 bits (259), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 57/143 (39%), Positives = 81/143 (56%), Gaps = 3/143 (2%)

Query: 13  SHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVI 72
           S  R  ARLAAVQALYQ+++ G     ++ E+  +R  A  E DV   Y   +  +F  I
Sbjct: 5   SKSRSAARLAAVQALYQLEMEGTPLASLLHEFHQHRLGATIE-DV--TYAQAEESFFDDI 61

Query: 73  IHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVC 132
           + GV  R+  ID L+++ L+  WS  RLD  +  ILRAG  EL+    V    +ISEYV 
Sbjct: 62  VTGVDKRRAEIDALVAARLSSGWSMDRLDKPMRQILRAGTYELLARKDVGTGTVISEYVD 121

Query: 133 IAHDFFYGDEPKFINAVLDKVSR 155
           +AH F+   E  F+N +LD V++
Sbjct: 122 VAHAFYDKREAGFVNGLLDGVAK 144


>gi|217976846|ref|YP_002360993.1| NusB antitermination factor [Methylocella silvestris BL2]
 gi|217502222|gb|ACK49631.1| NusB antitermination factor [Methylocella silvestris BL2]
          Length = 154

 Score =  104 bits (259), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 59/150 (39%), Positives = 84/150 (56%), Gaps = 6/150 (4%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           R  ARLAAVQALYQ+D+      E  +E+E++    + E     +Y   +L +F+ I+ G
Sbjct: 7   RSAARLAAVQALYQMDVTDKGLKETCAEFESFWLGGEVE---GQLYKPAELAFFKDILSG 63

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
           V+  +  ID  I   L E W   R+D +L +ILRAG  EL +   VP  V I EYV +A 
Sbjct: 64  VLADQGPIDRAIDQTLVEGWPLVRIDSVLRAILRAGAYELKKRTDVPARVAIKEYVDVAG 123

Query: 136 DFFYGDEPKFINAVLDKVSRK---EEIKRS 162
            FF  +E   +NAVLD ++R+   EE +R 
Sbjct: 124 AFFEREESGMVNAVLDHLARRFRAEEFERP 153


>gi|307293552|ref|ZP_07573396.1| NusB antitermination factor [Sphingobium chlorophenolicum L-1]
 gi|306879703|gb|EFN10920.1| NusB antitermination factor [Sphingobium chlorophenolicum L-1]
          Length = 148

 Score =  103 bits (256), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 57/143 (39%), Positives = 82/143 (57%), Gaps = 3/143 (2%)

Query: 13  SHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVI 72
           S  R  ARLAAVQALYQ+++ G     ++ E+  +R  A  E DV   Y   +  +F  +
Sbjct: 5   SKSRSAARLAAVQALYQLEMEGTPIHLLLHEFHQHRLGATIE-DV--TYAQAEESFFDDV 61

Query: 73  IHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVC 132
           + GV  R++ ID LI++ L++ WS  RLD  +  ILRAG  EL+    V     ISEYV 
Sbjct: 62  VQGVDRRREEIDALIAARLSKGWSLERLDKPMRQILRAGTYELLARKDVATGTAISEYVD 121

Query: 133 IAHDFFYGDEPKFINAVLDKVSR 155
           +AH F+   E  F+N +LD V++
Sbjct: 122 VAHAFYDKREAGFVNGLLDAVAK 144


>gi|182677206|ref|YP_001831352.1| NusB antitermination factor [Beijerinckia indica subsp. indica ATCC
           9039]
 gi|182633089|gb|ACB93863.1| NusB antitermination factor [Beijerinckia indica subsp. indica ATCC
           9039]
          Length = 155

 Score =  103 bits (256), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 53/144 (36%), Positives = 85/144 (59%), Gaps = 3/144 (2%)

Query: 13  SHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVI 72
           + +R  ARLAAVQALYQ+++      E ++E+E++    + E D    Y   ++ +FR I
Sbjct: 4   AEQRSAARLAAVQALYQMEVTEKGLNETLAEFESFWIGNEIEGDQ---YKEAEIAFFRDI 60

Query: 73  IHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVC 132
           + GV+  ++ ID  +   L + W   R+D ++ +ILRAG  EL +   +P  V I EYV 
Sbjct: 61  LGGVLADQEPIDRQLDKTLVDGWPLRRVDPVVRAILRAGAYELKKRTDIPARVSIKEYVD 120

Query: 133 IAHDFFYGDEPKFINAVLDKVSRK 156
           +A  FF  +E   INAVLD+++R+
Sbjct: 121 VAGAFFGREESGMINAVLDELARR 144


>gi|323138566|ref|ZP_08073634.1| NusB antitermination factor [Methylocystis sp. ATCC 49242]
 gi|322396200|gb|EFX98733.1| NusB antitermination factor [Methylocystis sp. ATCC 49242]
          Length = 150

 Score =  102 bits (255), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 56/150 (37%), Positives = 86/150 (57%), Gaps = 5/150 (3%)

Query: 15  RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESV-YLHVDLEWFRVII 73
           +R  ARLA VQALYQ+++ G    EI +E+E++        ++E V Y   ++ +FR ++
Sbjct: 5   QRSAARLAIVQALYQMEVAGKGLNEIFAEFESHWIG----REIEGVQYKPAEVTFFRDVL 60

Query: 74  HGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCI 133
            GV+  +  ID  I   L+  W  SR++ ++ + LRAG  EL     VP  V+I EYV +
Sbjct: 61  QGVLTDQVAIDRQIDRVLSGGWPLSRVEAVMRAALRAGAYELRARKDVPARVVIKEYVDV 120

Query: 134 AHDFFYGDEPKFINAVLDKVSRKEEIKRSG 163
           A  FF   E   +NAVLDK++R+E  +  G
Sbjct: 121 AGAFFGPTESGMVNAVLDKIAREERAEELG 150


>gi|259416248|ref|ZP_05740168.1| transcription antitermination factor NusB [Silicibacter sp.
           TrichCH4B]
 gi|259347687|gb|EEW59464.1| transcription antitermination factor NusB [Silicibacter sp.
           TrichCH4B]
          Length = 164

 Score =  102 bits (253), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 56/145 (38%), Positives = 85/145 (58%), Gaps = 5/145 (3%)

Query: 13  SHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVI 72
           +  R  ARL AVQAL+Q++    ST ++I E+E +RF A  E D    Y   D + FR +
Sbjct: 18  TQARSAARLYAVQALFQMEQSDQSTNKVIVEFEDHRFGATYEGD---EYAEGDTKLFRKL 74

Query: 73  IHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVC 132
           ++  ++ +  ID +    L  KW  +R+D  L ++ RA   E +E  + PV+V+I+EYV 
Sbjct: 75  VNDAVNYQAKIDQMTDRALVAKWPIARIDPTLRALFRAAGAEFVESDT-PVKVVINEYVD 133

Query: 133 IAHDFFY-GDEPKFINAVLDKVSRK 156
           IA  FF  G E  F+NAVLD ++R+
Sbjct: 134 IARAFFPEGREASFVNAVLDHMARE 158


>gi|294010264|ref|YP_003543724.1| N utilization substance protein B [Sphingobium japonicum UT26S]
 gi|292673594|dbj|BAI95112.1| N utilization substance protein B [Sphingobium japonicum UT26S]
          Length = 148

 Score =  101 bits (252), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 57/143 (39%), Positives = 81/143 (56%), Gaps = 3/143 (2%)

Query: 13  SHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVI 72
           S  R  ARLAAVQALYQ+++ G     ++ E+  +R  A  E DV   Y   +  +F  +
Sbjct: 5   SKSRSAARLAAVQALYQLEMEGTPLHLLLHEFHQHRLGATIE-DV--TYAQAEESFFDDV 61

Query: 73  IHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVC 132
           + GV  R++ ID LI + L++ WS  RLD  +  ILRAG  EL+    V     ISEYV 
Sbjct: 62  VQGVDRRREEIDALIVARLSKGWSLERLDKPMRQILRAGTYELLARKDVATGTAISEYVD 121

Query: 133 IAHDFFYGDEPKFINAVLDKVSR 155
           +AH F+   E  F+N +LD V++
Sbjct: 122 VAHAFYDKREAGFVNGLLDAVAK 144


>gi|149185970|ref|ZP_01864285.1| NusB antitermination factor [Erythrobacter sp. SD-21]
 gi|148830531|gb|EDL48967.1| NusB antitermination factor [Erythrobacter sp. SD-21]
          Length = 150

 Score =  100 bits (249), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 56/144 (38%), Positives = 83/144 (57%), Gaps = 3/144 (2%)

Query: 13  SHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVI 72
           S  R  ARL AVQALYQ  + G +T ++++E+  +R     E   +  Y   D+++F  +
Sbjct: 7   SQSRSAARLGAVQALYQQQMEGTATAKLLNEFHLHRLGKVIE---DEEYADADVDFFDDL 63

Query: 73  IHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVC 132
           + GV  R+  ID L+++ L   W+ +RLD  +  ILRAG  ELI    VP    ISEYV 
Sbjct: 64  VKGVDARRAEIDELLTARLASGWTLARLDKTMLQILRAGSYELIARKDVPKAAAISEYVD 123

Query: 133 IAHDFFYGDEPKFINAVLDKVSRK 156
           +A  FF   E KF+N +LD V+++
Sbjct: 124 VAKAFFDDREAKFVNGILDAVAKE 147


>gi|167647006|ref|YP_001684669.1| transcription antitermination protein NusB [Caulobacter sp. K31]
 gi|167349436|gb|ABZ72171.1| NusB antitermination factor [Caulobacter sp. K31]
          Length = 153

 Score =  100 bits (249), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 52/140 (37%), Positives = 72/140 (51%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           R +ARLA VQALYQ++  G     ++ E+  +RF  D +          D  +F  +  G
Sbjct: 10  RSVARLAVVQALYQMEQSGVGVDAVVREFAEHRFDRDVDGPDTDRLAAADETFFAELAKG 69

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
           V+  +  +D  I   L   W   RLD    ++LR+G  EL+    VP EV+I EYV IA 
Sbjct: 70  VVAHQAAVDQAIVKRLASGWKLERLDATARAVLRSGAYELMHRPDVPTEVVIDEYVEIAK 129

Query: 136 DFFYGDEPKFINAVLDKVSR 155
            FF G E  FIN  LD ++R
Sbjct: 130 SFFEGPESGFINGALDAIAR 149


>gi|296532920|ref|ZP_06895581.1| transcription antitermination factor NusB [Roseomonas cervicalis
           ATCC 49957]
 gi|296266750|gb|EFH12714.1| transcription antitermination factor NusB [Roseomonas cervicalis
           ATCC 49957]
          Length = 170

 Score =  100 bits (248), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 47/137 (34%), Positives = 77/137 (56%)

Query: 19  ARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMD 78
           +R+AA+QAL+Q +  G S   +I ++  +R   D     +      D+  F  ++ GV  
Sbjct: 25  SRVAAIQALFQSEQSGESAETVIDQFVRFRIGPDAGGFEDGRVPLADVPLFAGVVRGVAR 84

Query: 79  RKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFF 138
           + + +D ++   L   W+ +RLD +L ++LRA   EL      P  V+I+EY+ IAH FF
Sbjct: 85  QSEALDGILQGHLAGDWTVARLDPVLRALLRAAAHELSSGTEPPARVVINEYMDIAHGFF 144

Query: 139 YGDEPKFINAVLDKVSR 155
            G+EP+F N VLD ++R
Sbjct: 145 SGEEPRFANGVLDAMAR 161


>gi|298291642|ref|YP_003693581.1| NusB antitermination factor [Starkeya novella DSM 506]
 gi|296928153|gb|ADH88962.1| NusB antitermination factor [Starkeya novella DSM 506]
          Length = 160

 Score = 99.4 bits (246), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 50/141 (35%), Positives = 82/141 (58%), Gaps = 3/141 (2%)

Query: 15  RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74
           R+  ARL AVQALYQ+D+      +I++++E++    + E D        D+  FR I+ 
Sbjct: 14  RKSAARLNAVQALYQMDVAATPLADILAQFESHWIGHEIEGDE---IASADVNLFRDIVG 70

Query: 75  GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134
           GV+  +  ID ++ + L + W   R++ +L ++LRAG  EL E   VP  V+++EYV +A
Sbjct: 71  GVVREQLSIDPVLDAALVKGWPLKRIEAVLRAVLRAGAYELSERPDVPARVVVAEYVNVA 130

Query: 135 HDFFYGDEPKFINAVLDKVSR 155
             F   +E   +NAVLD ++R
Sbjct: 131 AAFLDREETGMVNAVLDGLAR 151


>gi|84502770|ref|ZP_01000889.1| transcription antitermination factor NusB [Oceanicola batsensis
           HTCC2597]
 gi|84389165|gb|EAQ01963.1| transcription antitermination factor NusB [Oceanicola batsensis
           HTCC2597]
          Length = 166

 Score = 99.0 bits (245), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 55/151 (36%), Positives = 89/151 (58%), Gaps = 8/151 (5%)

Query: 10  LKLSHRRGI---ARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDL 66
           L  + RR +   +RL AVQAL+Q++ IG +   +I+E+E +RF A  E D  +     D+
Sbjct: 14  LSGNQRRKMKSASRLYAVQALFQMEAIGQTVERVIAEFEDHRFGAVYEGDEMA---EGDI 70

Query: 67  EWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVI 126
           + FR  +   ++ +  ID +    L  KW  +R+D  L ++ RA   EL++  + P +V+
Sbjct: 71  DLFRATMADAVNYQARIDQMTDRALVAKWPIARIDPTLRALFRAAGAELVQSDT-PPKVV 129

Query: 127 ISEYVCIAHDFFY-GDEPKFINAVLDKVSRK 156
           I EYV +A  FF  G EP+F+NAVLD ++R+
Sbjct: 130 IKEYVDVASAFFPEGREPRFVNAVLDHMARE 160


>gi|89055903|ref|YP_511354.1| NusB antitermination factor [Jannaschia sp. CCS1]
 gi|88865452|gb|ABD56329.1| NusB antitermination factor [Jannaschia sp. CCS1]
          Length = 165

 Score = 99.0 bits (245), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 56/142 (39%), Positives = 81/142 (57%), Gaps = 5/142 (3%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           R  ARL AVQAL+Q++    S  E+  E+ET+RF A  E D        D   FR  + G
Sbjct: 22  RSAARLYAVQALFQMEHSNQSLDEVRQEFETHRFGAVYEGDE---LAEGDPNLFRRTLEG 78

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
            ++R+  ID +    L  KW   R+D  L ++ RA   EL+E  + P +V+I+E+V +A 
Sbjct: 79  AVERQALIDQMTDRALVAKWPIDRIDPTLRALFRAAGAELVEG-TAPPKVVITEFVDVAR 137

Query: 136 DFFY-GDEPKFINAVLDKVSRK 156
            FF  G E KF+NAVLD ++R+
Sbjct: 138 AFFPEGKEAKFVNAVLDHMARE 159


>gi|315499922|ref|YP_004088725.1| nusb antitermination factor [Asticcacaulis excentricus CB 48]
 gi|315417934|gb|ADU14574.1| NusB antitermination factor [Asticcacaulis excentricus CB 48]
          Length = 177

 Score = 98.6 bits (244), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 55/148 (37%), Positives = 80/148 (54%), Gaps = 2/148 (1%)

Query: 10  LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELD--VESVYLHVDLE 67
           LK    R +ARL  VQALYQ++I G     +I E+  +RF  + E +   E      D  
Sbjct: 27  LKEKRARTVARLVLVQALYQMEIAGTGVESVIREFADFRFDGNIEGECGEEQRLGTADEA 86

Query: 68  WFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVII 127
           +F   +  ++  +  ID+LI+  L   W   R+D  L +ILRAG  EL     V VEV+I
Sbjct: 87  FFADGLRTIVKAQAEIDVLIAERLASNWRLDRIDTTLRAILRAGAWELKFRPDVAVEVVI 146

Query: 128 SEYVCIAHDFFYGDEPKFINAVLDKVSR 155
           +EYV IA  FF  +E +F+N  LD +++
Sbjct: 147 NEYVEIAKAFFGNEEARFVNGALDGIAK 174


>gi|254465261|ref|ZP_05078672.1| transcription antitermination factor NusB [Rhodobacterales
           bacterium Y4I]
 gi|206686169|gb|EDZ46651.1| transcription antitermination factor NusB [Rhodobacterales
           bacterium Y4I]
          Length = 160

 Score = 98.6 bits (244), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 57/158 (36%), Positives = 92/158 (58%), Gaps = 6/158 (3%)

Query: 1   MTIQDNK-KDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVES 59
           M+ QD++ K    +  R  ARL A+QAL+Q++  G +  ++I E+E +RF A  E D  +
Sbjct: 1   MSTQDSRPKGNGKNQMRSAARLYALQALFQMEQSGQTFDQVIVEFEDHRFGAVYEGDEMA 60

Query: 60  VYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECH 119
                D + FR ++   ++ +  ID +    L  KW  +R+D  L ++ RA   EL +  
Sbjct: 61  ---EGDTKVFRKLVREAVNYQARIDQMTDRALVAKWPIARIDPTLRALFRAAGAELTQSD 117

Query: 120 SVPVEVIISEYVCIAHDFFY-GDEPKFINAVLDKVSRK 156
           + P +V+I+E+V IA  FF  G EPKF+NAVLD ++R+
Sbjct: 118 T-PPKVVINEFVDIARAFFPEGKEPKFVNAVLDHMARE 154


>gi|89067938|ref|ZP_01155382.1| transcription antitermination factor NusB [Oceanicola granulosus
           HTCC2516]
 gi|89046536|gb|EAR52592.1| transcription antitermination factor NusB [Oceanicola granulosus
           HTCC2516]
          Length = 156

 Score = 98.2 bits (243), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 54/142 (38%), Positives = 79/142 (55%), Gaps = 5/142 (3%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           R  +RL AVQAL+Q++    S   +++E+E +RF A  E   E      DLE FR +   
Sbjct: 13  RSASRLYAVQALFQMEAAQQSVDRVMAEFEDHRFGASYE---EGEMAEGDLETFRALCET 69

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
            +D +  ID +    L  KW  +R+D  L ++ RA   E I     P +V+I+E+V IA 
Sbjct: 70  AVDNQAKIDQMTDRALVAKWPIARIDPTLRALFRAAGAEFIR-RDTPPKVVITEFVDIAR 128

Query: 136 DFFY-GDEPKFINAVLDKVSRK 156
            FF  G EP F+NAVLD ++R+
Sbjct: 129 AFFPEGREPSFVNAVLDHMARE 150


>gi|159044792|ref|YP_001533586.1| N utilization substance protein B-like protein [Dinoroseobacter
           shibae DFL 12]
 gi|157912552|gb|ABV93985.1| N utilization substance protein B-like protein [Dinoroseobacter
           shibae DFL 12]
          Length = 159

 Score = 98.2 bits (243), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 60/155 (38%), Positives = 88/155 (56%), Gaps = 8/155 (5%)

Query: 6   NKKDLKLSHRR---GIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYL 62
           +K+  KL+ +R     ARL AVQAL+Q++  G S   +I E+E +RF A  E + E    
Sbjct: 2   SKQSDKLAAKRQAKSAARLYAVQALFQMEAAGQSADSVIREFEDHRFGAIYE-EGEMAEG 60

Query: 63  HVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVP 122
           HV L  FR  +   ++ +  ID L    L   W   R+D  L ++ RA   EL+   + P
Sbjct: 61  HVTL--FRTTVGEAVNWQAKIDQLTDRALATAWPIDRIDPTLRALFRAAGAELVRADT-P 117

Query: 123 VEVIISEYVCIAHDFFY-GDEPKFINAVLDKVSRK 156
            +V+I+EYV +A  FF  G EPKF+NAVLD ++R+
Sbjct: 118 PKVVINEYVDLARAFFPDGKEPKFVNAVLDHMARE 152


>gi|260425570|ref|ZP_05779550.1| transcription antitermination factor NusB [Citreicella sp. SE45]
 gi|260423510|gb|EEX16760.1| transcription antitermination factor NusB [Citreicella sp. SE45]
          Length = 163

 Score = 98.2 bits (243), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 58/160 (36%), Positives = 88/160 (55%), Gaps = 7/160 (4%)

Query: 1   MTIQDNKKDLKLSHRRGI---ARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDV 57
           MT  D    L  + +R +   +RL AVQALYQ++  G S   + +E+  +RF A+ E  V
Sbjct: 1   MTNPDTPPALSGNQKRRMKSASRLYAVQALYQMEAAGQSVERVQNEFVDHRFGAEIEEGV 60

Query: 58  ESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIE 117
           E   L  D+  F  I    ++ +  ID +    L  KW  +R+D  L ++ RA   E ++
Sbjct: 61  E--MLDGDVGLFGRITSAAVNWQAKIDQMTDRALVAKWPIARIDPTLRALFRAAGAEFVD 118

Query: 118 CHSVPVEVIISEYVCIAHDFFY-GDEPKFINAVLDKVSRK 156
             + P  V+ISEYV +A  FF  G EP+F+NAVLD ++R+
Sbjct: 119 SDT-PPRVVISEYVDVARAFFPEGREPQFVNAVLDHMARE 157


>gi|84515388|ref|ZP_01002750.1| putative N utilization substance protein B [Loktanella
           vestfoldensis SKA53]
 gi|84510671|gb|EAQ07126.1| putative N utilization substance protein B [Loktanella
           vestfoldensis SKA53]
          Length = 155

 Score = 97.4 bits (241), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 58/159 (36%), Positives = 91/159 (57%), Gaps = 9/159 (5%)

Query: 1   MTIQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESV 60
           MTI +N++       +  AR  AVQAL+Q++  G +   I+ E+E +RF    + DVE V
Sbjct: 1   MTISNNQR----RKMKSAARFYAVQALFQMEATGQTVEGIVREFEDHRFGEIID-DVELV 55

Query: 61  YLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHS 120
              VD   FR ++   +D +  ID +    L EKW  +R+D    ++ RA   EL++   
Sbjct: 56  EGDVDT--FRRMMDRAVDLQASIDQMTDRALVEKWPIARIDPTWRALFRAAGAELLD-KD 112

Query: 121 VPVEVIISEYVCIAHDFFY-GDEPKFINAVLDKVSRKEE 158
            P +V+ISE+V +A  F + G EPKF+NAVLD ++R+ +
Sbjct: 113 TPPKVVISEFVAVAEAFSHDGKEPKFVNAVLDHMARQAQ 151


>gi|254511391|ref|ZP_05123458.1| transcription antitermination factor NusB [Rhodobacteraceae
           bacterium KLH11]
 gi|221535102|gb|EEE38090.1| transcription antitermination factor NusB [Rhodobacteraceae
           bacterium KLH11]
          Length = 160

 Score = 97.4 bits (241), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 55/160 (34%), Positives = 90/160 (56%), Gaps = 6/160 (3%)

Query: 1   MTIQDNKKDLKLSHR-RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVES 59
           MT  D  K      + +  ARL AVQAL+Q++  G +T  +++E+  +RF A  E +   
Sbjct: 1   MTKTDAPKPANQKRQMKSAARLYAVQALFQMEQSGQTTEAVVTEFLDHRFGAVYEGEE-- 58

Query: 60  VYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECH 119
             L  D+  FR ++   ++ +  ID +    L  KW  +R+D  L ++ RA   EL +  
Sbjct: 59  -MLDGDISVFRALVDNAVNYQAPIDQMTDRALVAKWPIARIDPTLRAVFRAAGAELTQSD 117

Query: 120 SVPVEVIISEYVCIAHDFFY-GDEPKFINAVLDKVSRKEE 158
           + P +V+I+E+V +A  FF  G EPKF+NAVLD ++R+ +
Sbjct: 118 T-PPKVVITEFVDVARAFFPEGKEPKFVNAVLDHMAREAQ 156


>gi|260434089|ref|ZP_05788060.1| transcription antitermination factor NusB [Silicibacter
           lacuscaerulensis ITI-1157]
 gi|260417917|gb|EEX11176.1| transcription antitermination factor NusB [Silicibacter
           lacuscaerulensis ITI-1157]
          Length = 160

 Score = 97.1 bits (240), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 57/158 (36%), Positives = 88/158 (55%), Gaps = 6/158 (3%)

Query: 1   MTIQDNKKDLKLSH-RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVES 59
           MT  D  K        +  ARL AVQAL+Q++  G +T ++++E+  +RF A  E D   
Sbjct: 1   MTQTDTPKPANRKRLMKSAARLYAVQALFQMEQSGQTTEQVVNEFLDHRFGAVYEGDE-- 58

Query: 60  VYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECH 119
             L  D   FR ++   ++ +  ID +    L  KW  SR+D  L ++ RA   EL +  
Sbjct: 59  -MLEGDSALFRKLVDDAVNYQAPIDQMTDRALVAKWPISRIDPTLRALFRAAGAELSQSD 117

Query: 120 SVPVEVIISEYVCIAHDFFY-GDEPKFINAVLDKVSRK 156
           + P +V+I+E+V +A  FF  G EPKF+NAVLD ++R+
Sbjct: 118 T-PPKVVITEFVDVARAFFPEGKEPKFVNAVLDHMARE 154


>gi|255263487|ref|ZP_05342829.1| transcription antitermination factor NusB [Thalassiobium sp. R2A62]
 gi|255105822|gb|EET48496.1| transcription antitermination factor NusB [Thalassiobium sp. R2A62]
          Length = 157

 Score = 96.7 bits (239), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 54/144 (37%), Positives = 82/144 (56%), Gaps = 5/144 (3%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           R  ARL A QALYQ+++ G +   +  E+ETYRF    + D        D+E FR ++  
Sbjct: 14  RSAARLFATQALYQMELSGQTVDAVRQEFETYRFGEVIDGDE---LAEGDVETFRDLLEN 70

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
            ++ +  ID +    L  KW+  R+D  L ++ RA   EL +  S P +V+I E+V +A 
Sbjct: 71  AVNHQALIDQMTDRALVAKWAIDRIDPTLRALFRAAGAELTQS-STPPKVVIVEFVDVAV 129

Query: 136 DFFY-GDEPKFINAVLDKVSRKEE 158
            FF  G EPKF+NAVLD ++R+ +
Sbjct: 130 AFFPEGKEPKFVNAVLDHMAREAQ 153


>gi|114767590|ref|ZP_01446325.1| transcription antitermination factor NusB [Pelagibaca bermudensis
           HTCC2601]
 gi|114540368|gb|EAU43457.1| transcription antitermination factor NusB [Roseovarius sp.
           HTCC2601]
          Length = 163

 Score = 96.7 bits (239), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 58/160 (36%), Positives = 89/160 (55%), Gaps = 7/160 (4%)

Query: 1   MTIQDNKKDLKLSHRRGI---ARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDV 57
           MT  D    L  + +R +   +RL AVQALYQ++    +  ++  E+  YRF A+ +  V
Sbjct: 1   MTTPDTPPALSGNQKRRMKSASRLYAVQALYQMEAGDVAVEKVQREFVDYRFGAEIDEGV 60

Query: 58  ESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIE 117
           E V   V L  F  I    ++ +  ID +    L  KW  +R+D  L ++ RA   EL++
Sbjct: 61  EMVEGDVTL--FGKITSSAVNWQAKIDQMTDRALVAKWPIARIDPTLRALFRAAGAELVD 118

Query: 118 CHSVPVEVIISEYVCIAHDFFY-GDEPKFINAVLDKVSRK 156
             + P +V+ISEYV +A  FF  G EP+F+NAVLD ++R+
Sbjct: 119 SDTPP-KVVISEYVEVASAFFPEGREPRFVNAVLDHMARE 157


>gi|126733189|ref|ZP_01748936.1| putative N utilization substance protein B [Roseobacter sp. CCS2]
 gi|126716055|gb|EBA12919.1| putative N utilization substance protein B [Roseobacter sp. CCS2]
          Length = 159

 Score = 96.3 bits (238), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 55/159 (34%), Positives = 86/159 (54%), Gaps = 9/159 (5%)

Query: 1   MTIQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESV 60
           MT+ +NKK       +  ARL AVQAL+Q++  G +  ++  E+E +R  A  +   E  
Sbjct: 1   MTLSNNKK----RKMKSAARLYAVQALFQMEASGQTVDQVTREFEDHRLGAVYD---EGE 53

Query: 61  YLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHS 120
               D++ FR ++   +D +  ID L    L  KW  +R+D    ++ RA   EL     
Sbjct: 54  MTEGDVDTFRALMEKAVDDQAAIDQLTDRALVAKWPIARIDPTWRALFRAAGAELT-LQD 112

Query: 121 VPVEVIISEYVCIAHDFFY-GDEPKFINAVLDKVSRKEE 158
            P +V+ISE+V +A  F   G EPKF+NAVLD ++R+ +
Sbjct: 113 TPPKVVISEFVSVAEAFSADGKEPKFVNAVLDHMAREAQ 151


>gi|144897828|emb|CAM74692.1| NusB antitermination factor [Magnetospirillum gryphiswaldense
           MSR-1]
          Length = 160

 Score = 95.1 bits (235), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 51/149 (34%), Positives = 79/149 (53%), Gaps = 5/149 (3%)

Query: 7   KKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDL 66
           +K    + RR  ARLAAVQALY ++I G +  + + E+   R   D+E          D+
Sbjct: 2   RKPNPGATRRSAARLAAVQALYSMEITGVTAEQALVEF---RQRLDSE--PRGKLAEPDM 56

Query: 67  EWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVI 126
           +   +++ G       +D  I+  L   W+  RL+ +L +ILRAG  EL      P  V 
Sbjct: 57  DLVALLVRGASFDGGDLDAHIARGLARDWTVDRLESVLRAILRAGAYELKARPQTPARVA 116

Query: 127 ISEYVCIAHDFFYGDEPKFINAVLDKVSR 155
           I+EYV + H F+ G EP  +NAV+D+++R
Sbjct: 117 ITEYVDVTHAFYSGPEPGLVNAVMDRMAR 145


>gi|329850578|ref|ZP_08265423.1| transcription antitermination factor NusB [Asticcacaulis
           biprosthecum C19]
 gi|328840893|gb|EGF90464.1| transcription antitermination factor NusB [Asticcacaulis
           biprosthecum C19]
          Length = 173

 Score = 95.1 bits (235), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 55/140 (39%), Positives = 79/140 (56%), Gaps = 3/140 (2%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           R +ARL  VQALYQ++I G     ++ E+  +RF  DT+L+ E +    D  +F      
Sbjct: 33  RTVARLVLVQALYQMEITGTGVETVVREFADHRF--DTDLEGEPLA-QADEAFFGEGARA 89

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
           V+  +  ID LI+  L   W   RLD  + +ILRAG  EL     + +EV+I+EYV IA 
Sbjct: 90  VVREQGVIDPLITHRLASGWRLERLDTTVRAILRAGTWELKFRPDIGLEVVINEYVEIAR 149

Query: 136 DFFYGDEPKFINAVLDKVSR 155
            FF   E +F+NA LD V++
Sbjct: 150 AFFGETEARFVNAALDGVAK 169


>gi|254460442|ref|ZP_05073858.1| transcription antitermination factor NusB [Rhodobacterales
           bacterium HTCC2083]
 gi|206677031|gb|EDZ41518.1| transcription antitermination factor NusB [Rhodobacteraceae
           bacterium HTCC2083]
          Length = 157

 Score = 94.4 bits (233), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 56/142 (39%), Positives = 83/142 (58%), Gaps = 5/142 (3%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           +  AR  AVQALYQ+++ G +T +II E+  +RF A  E D+E V   VDL  F  +++ 
Sbjct: 14  KSAARFYAVQALYQMEVSGQTTDKIIVEFLDHRFGAVYE-DMEFVEGDVDL--FSSLVND 70

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
            ++ +  ID +    L  KW  +R+D  L  + RA   EL+     P +V+I E+V IA 
Sbjct: 71  AVNHQAQIDQMTDRALVAKWPIARIDPTLRGLFRAAGAELV-ASDTPPKVVIKEFVDIAA 129

Query: 136 DFFY-GDEPKFINAVLDKVSRK 156
            FF  G E +F+NAVLD V+R+
Sbjct: 130 AFFPEGKESRFVNAVLDHVARE 151


>gi|254452714|ref|ZP_05066151.1| transcription antitermination factor NusB [Octadecabacter
           antarcticus 238]
 gi|198267120|gb|EDY91390.1| transcription antitermination factor NusB [Octadecabacter
           antarcticus 238]
          Length = 146

 Score = 93.2 bits (230), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 52/142 (36%), Positives = 80/142 (56%), Gaps = 5/142 (3%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           +  +RL AVQAL+Q++    +   +  E+E +RF A  E D        D+  FR+++  
Sbjct: 2   KSASRLYAVQALFQMEHSSQTIESVTREFEDHRFGAVYEGDE---LAEGDVNLFRMLVET 58

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
            ++ +  ID +    L  KW   R+D  L ++ RA  +ELI     P +V ISEYV +A 
Sbjct: 59  AVNEQTKIDQMTDRALVAKWPLGRIDPTLRALFRAAGVELI-GRDTPPKVAISEYVDVAK 117

Query: 136 DFF-YGDEPKFINAVLDKVSRK 156
            FF  G+EPKF+NAVLD ++R+
Sbjct: 118 AFFDGGEEPKFVNAVLDHMARQ 139


>gi|260575720|ref|ZP_05843717.1| NusB antitermination factor [Rhodobacter sp. SW2]
 gi|259022118|gb|EEW25417.1| NusB antitermination factor [Rhodobacter sp. SW2]
          Length = 157

 Score = 93.2 bits (230), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 55/156 (35%), Positives = 90/156 (57%), Gaps = 14/156 (8%)

Query: 4   QDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCA--DTELDVESVY 61
           + +KK +K +     ARL AVQAL+Q+++ G +   +  E+ET+RF A  D +   E   
Sbjct: 7   KPDKKQMKSA-----ARLYAVQALFQMEVSGQTVEAVQREFETHRFGAVYDGDEMAEGDV 61

Query: 62  LHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSV 121
           +H     FR ++   ++ +  ID L    L  KW  SR+D +L ++ RA   E++E  + 
Sbjct: 62  VH-----FRALVGHAVNWQAKIDQLTDRALVAKWPISRIDPVLRALFRAAGAEMLEMPT- 115

Query: 122 PVEVIISEYVCIAHDFFY-GDEPKFINAVLDKVSRK 156
           P +V+I+E+V +A  FF  G E  F+NAVLD ++R+
Sbjct: 116 PPKVVITEFVDVAKAFFPEGKEASFVNAVLDHMARE 151


>gi|163738657|ref|ZP_02146071.1| NusB antitermination factor [Phaeobacter gallaeciensis BS107]
 gi|163742958|ref|ZP_02150341.1| putative N utilization substance protein B [Phaeobacter
           gallaeciensis 2.10]
 gi|161383641|gb|EDQ08027.1| putative N utilization substance protein B [Phaeobacter
           gallaeciensis 2.10]
 gi|161387985|gb|EDQ12340.1| NusB antitermination factor [Phaeobacter gallaeciensis BS107]
          Length = 163

 Score = 92.8 bits (229), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 51/142 (35%), Positives = 81/142 (57%), Gaps = 5/142 (3%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           +  +RL AVQAL+Q++    +  ++I E+E +RF A  + D        D + FR +I G
Sbjct: 20  KSASRLYAVQALFQMEHSNLTFDKVIVEFEDHRFGAVYDGDE---MAEGDTKSFRKLIEG 76

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
            ++ +  ID +    L  KW  +R+D  L ++ RA   E +     P +V+I+E+V IA 
Sbjct: 77  AVNEQAKIDQMTDRALVAKWPIARIDPTLRALFRAAGAEFL-AGKTPPKVVINEFVDIAR 135

Query: 136 DFFY-GDEPKFINAVLDKVSRK 156
            FF  G EPKF+NAVLD ++R+
Sbjct: 136 AFFPEGKEPKFVNAVLDHMARE 157


>gi|310816559|ref|YP_003964523.1| putative N utilization substance protein B [Ketogulonicigenium
           vulgare Y25]
 gi|308755294|gb|ADO43223.1| putative N utilization substance protein B [Ketogulonicigenium
           vulgare Y25]
          Length = 147

 Score = 92.8 bits (229), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 50/142 (35%), Positives = 80/142 (56%), Gaps = 5/142 (3%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           R  ARL AVQAL+Q++  G + T +  E+E +RF A   +D E + +  D+  FR ++  
Sbjct: 2   RSAARLYAVQALFQMEAAGVTVTRVTREFEDFRFGA--SIDGEEL-VEGDVTLFRTLMQD 58

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
            ++ +  ID +    L  KW  +R+D  L ++ RA   E +     P +V+I E++ IA 
Sbjct: 59  AVNNQAQIDQMTDRALVSKWPIARIDPTLRALFRAAGAEFM-LKETPAKVVIVEFMDIAS 117

Query: 136 DFFY-GDEPKFINAVLDKVSRK 156
            F     EPKF+NAVLD ++R+
Sbjct: 118 AFSADPKEPKFVNAVLDHMARE 139


>gi|126727899|ref|ZP_01743727.1| transcription antitermination factor NusB [Rhodobacterales
           bacterium HTCC2150]
 gi|126702840|gb|EBA01945.1| transcription antitermination factor NusB [Rhodobacterales
           bacterium HTCC2150]
          Length = 155

 Score = 92.4 bits (228), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 53/157 (33%), Positives = 85/157 (54%), Gaps = 9/157 (5%)

Query: 1   MTIQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESV 60
           MT+  N+    +   +  AR  AVQAL+Q++  G    ++ISE+E +RF A  + D    
Sbjct: 1   MTVSGNQ----MRKMKSAARFFAVQALFQLEHSGQEVDKVISEFEEHRFGATFDGD---E 53

Query: 61  YLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHS 120
               D   F +++ G ++ +  ID +    L  KW   R+D  L ++ RA   EL E  +
Sbjct: 54  MQEGDPATFGLLMRGAVNLQAKIDQMTDRALVVKWPLGRIDPTLRALFRAAGAELTEGET 113

Query: 121 VPVEVIISEYVCIAHDFFY-GDEPKFINAVLDKVSRK 156
            P +V+I+E+V +A  FF    EPKF+N VLD ++R+
Sbjct: 114 -PPKVVINEFVEVARAFFPETKEPKFVNGVLDHMARE 149


>gi|254440807|ref|ZP_05054300.1| transcription antitermination factor NusB [Octadecabacter
           antarcticus 307]
 gi|198250885|gb|EDY75200.1| transcription antitermination factor NusB [Octadecabacter
           antarcticus 307]
          Length = 146

 Score = 92.4 bits (228), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 50/142 (35%), Positives = 81/142 (57%), Gaps = 5/142 (3%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           +  +RL AVQAL+Q++    S   +  E+E +RF A  E +  +     D+  FR+++  
Sbjct: 2   KSASRLYAVQALFQMEHSNQSIESVTREFENHRFGAIYEGNEMA---EGDVALFRILVET 58

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
            ++ +  ID +    L  KW  +R+D  L ++ RA  +EL+     P  V I+EYV +A 
Sbjct: 59  AVNEQSKIDQMTDRALVAKWPLARIDPTLRALFRAAGVELL-GRDTPPRVAITEYVDVAK 117

Query: 136 DFF-YGDEPKFINAVLDKVSRK 156
            FF  G+EPKF+NAVLD ++R+
Sbjct: 118 AFFDGGEEPKFVNAVLDHMARQ 139


>gi|254475988|ref|ZP_05089374.1| transcription antitermination factor NusB [Ruegeria sp. R11]
 gi|214030231|gb|EEB71066.1| transcription antitermination factor NusB [Ruegeria sp. R11]
          Length = 163

 Score = 92.4 bits (228), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 52/142 (36%), Positives = 79/142 (55%), Gaps = 5/142 (3%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           R  +RL AVQAL+Q++    +   +I E+E +RF A  E   +      D + FR ++  
Sbjct: 20  RSASRLYAVQALFQMEHSNLTLDRVIVEFEDFRFGAVYE---DGEMAEGDSKVFRKLVED 76

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
            +  +  ID +    L  KW   R+D  L ++ RA   EL E  + P +V+I+E+V IA 
Sbjct: 77  AVSHQARIDQMTDRALVAKWPIGRIDPTLRALFRAAGAELTESKT-PPKVVINEFVDIAR 135

Query: 136 DFFY-GDEPKFINAVLDKVSRK 156
            FF  G EPKF+NAVLD ++R+
Sbjct: 136 AFFPEGKEPKFVNAVLDHMARE 157


>gi|83949450|ref|ZP_00958183.1| putative N utilization substance protein B [Roseovarius nubinhibens
           ISM]
 gi|83837349|gb|EAP76645.1| putative N utilization substance protein B [Roseovarius nubinhibens
           ISM]
          Length = 160

 Score = 92.0 bits (227), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 56/144 (38%), Positives = 80/144 (55%), Gaps = 8/144 (5%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCA--DTELDVESVYLHVDLEWFRVII 73
           R  ARL AVQAL+Q++    S  E+  E+  +RF A  D  +D++      D E F  +I
Sbjct: 16  RSAARLYAVQALFQMEHSSLSVDEVRREFLEFRFGAEFDDGIDMQ----EGDAEHFADVI 71

Query: 74  HGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCI 133
            G +  +  ID +    L  KW   R+D  L ++ RA   EL++    P +V+I EYV I
Sbjct: 72  EGAVQWQAKIDQMTDRALVAKWPIDRIDPTLRALFRAAGAELMQ-EGTPPKVVIVEYVDI 130

Query: 134 AHDFFY-GDEPKFINAVLDKVSRK 156
           A  FF  G EPKF+NAVLD ++R+
Sbjct: 131 AKSFFPEGREPKFVNAVLDFMARE 154


>gi|83593156|ref|YP_426908.1| NusB antitermination factor [Rhodospirillum rubrum ATCC 11170]
 gi|119390811|sp|Q2RTC4|NUSB_RHORT RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|83576070|gb|ABC22621.1| NusB antitermination factor [Rhodospirillum rubrum ATCC 11170]
          Length = 185

 Score = 92.0 bits (227), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 58/175 (33%), Positives = 84/175 (48%), Gaps = 21/175 (12%)

Query: 1   MTIQDNKKDLKLSHRRG------IARLAAVQALYQIDII--------------GCSTTEI 40
           M +QD+K       R G       ARLAAVQALY +D+               G      
Sbjct: 1   MALQDDKPGSAPKERSGRQIRSSAARLAAVQALYVLDLAEDARVDQVVLDFMSGSMGGMA 60

Query: 41  ISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRL 100
           I E        D   ++ ++    D E F +++ G       +D +I + L+  W + RL
Sbjct: 61  IVEVADPEGIFDPTEEIAALE-PPDGELFAMLVRGAHAELARLDEVIGASLSADWPWDRL 119

Query: 101 DMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSR 155
           + ++ ++LRAGV EL+E    P  V I EYV IA  F+ G EP  +NAVLD+V+R
Sbjct: 120 EPVVRAVLRAGVYELLERQRTPPRVAIKEYVDIAAAFYSGAEPGMVNAVLDRVAR 174


>gi|87200933|ref|YP_498190.1| NusB antitermination factor [Novosphingobium aromaticivorans DSM
           12444]
 gi|119390792|sp|Q2G467|NUSB_NOVAD RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|87136614|gb|ABD27356.1| NusB antitermination factor [Novosphingobium aromaticivorans DSM
           12444]
          Length = 148

 Score = 90.9 bits (224), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 49/128 (38%), Positives = 73/128 (57%), Gaps = 3/128 (2%)

Query: 28  YQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLI 87
           YQ D+       ++ E+  +R  A+ E DVE  Y   D+ +F  ++ GV  R+  ID L+
Sbjct: 21  YQADMEQTPLHLLLDEFHQHRLGAEIE-DVE--YAKADVAFFDDVVKGVDARRDEIDGLL 77

Query: 88  SSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFIN 147
           S+ L + W+  RLD  +  ILRAG  EL+    V V  +I+EYV +AH FF   E KF+N
Sbjct: 78  SARLAKGWALPRLDRTMLQILRAGAYELMARRDVNVGTVITEYVDVAHAFFEEREAKFVN 137

Query: 148 AVLDKVSR 155
            +LD V++
Sbjct: 138 GLLDAVAK 145


>gi|114327667|ref|YP_744824.1| n utilization substance protein B [Granulibacter bethesdensis
           CGDNIH1]
 gi|119390773|sp|Q0BTF1|NUSB_GRABC RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|114315841|gb|ABI61901.1| n utilization substance protein B [Granulibacter bethesdensis
           CGDNIH1]
          Length = 163

 Score = 90.9 bits (224), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 47/148 (31%), Positives = 80/148 (54%), Gaps = 2/148 (1%)

Query: 11  KLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDV--ESVYLHVDLEW 68
           + +  R  +R+AAVQAL+Q +    S   +I ++  +R  A    D   +      ++  
Sbjct: 3   RRTRPRTASRVAAVQALFQGEQAQESLEAVIEQFVRFRLGALPGQDGFEDGRIPDAEVPL 62

Query: 69  FRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIIS 128
           F  I+      +  ID L+ + L  +W  +RLD +L ++LRAG  EL      P  V+I+
Sbjct: 63  FSRIVRAATKEQDVIDPLLITALPAEWPLARLDPVLRALLRAGACELRMKDGPPPRVVIN 122

Query: 129 EYVCIAHDFFYGDEPKFINAVLDKVSRK 156
           EY+ IAH FF G+EP+ +N +L+ ++R+
Sbjct: 123 EYLDIAHGFFQGEEPRMVNGILNALARQ 150


>gi|84688074|ref|ZP_01015933.1| putative N utilization substance protein B [Maritimibacter
           alkaliphilus HTCC2654]
 gi|84663924|gb|EAQ10429.1| putative N utilization substance protein B [Rhodobacterales
           bacterium HTCC2654]
          Length = 168

 Score = 90.9 bits (224), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 55/142 (38%), Positives = 81/142 (57%), Gaps = 5/142 (3%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           +  +RL AVQAL+Q++  G     +  E+E +RF A+ E   E    +VDL  FR I+  
Sbjct: 25  KSASRLYAVQALFQMEAAGQGYDRVRKEFEDHRFGAEYEE-GEFEEGNVDL--FRAILGE 81

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
            +DR+  ID +    L  KW  +R+D  L ++ RA   EL+     P +V+I E+V +A 
Sbjct: 82  AVDRQAKIDQMTDRALVAKWPIARIDPTLRALFRAAGAELV-LGDTPPKVVIVEFVEVAK 140

Query: 136 DFFY-GDEPKFINAVLDKVSRK 156
            FF  G EPKF NAVLD ++R+
Sbjct: 141 AFFPEGHEPKFTNAVLDHMARE 162


>gi|148261108|ref|YP_001235235.1| NusB antitermination factor [Acidiphilium cryptum JF-5]
 gi|326404509|ref|YP_004284591.1| transcription antitermination protein NusB [Acidiphilium multivorum
           AIU301]
 gi|146402789|gb|ABQ31316.1| NusB antitermination factor [Acidiphilium cryptum JF-5]
 gi|325051371|dbj|BAJ81709.1| transcription antitermination protein NusB [Acidiphilium multivorum
           AIU301]
          Length = 165

 Score = 90.9 bits (224), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 52/145 (35%), Positives = 78/145 (53%), Gaps = 2/145 (1%)

Query: 13  SHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFC-ADTELDVESVYLHV-DLEWFR 70
           +  R +AR AAVQALYQ +  G +   +I ++  +RF      L VE   +   D+  F 
Sbjct: 8   ARPRTLARAAAVQALYQCEHAGETAETVIDQFVRHRFGRMAGMLGVEEGEVPPPDVPLFS 67

Query: 71  VIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEY 130
            I+     ++  +D LI+  L E W   RLD +L ++LRA   EL      P  V+I+EY
Sbjct: 68  RIVRTATAQQDVVDPLIAGVLPEAWPMPRLDPVLRALLRAAGAELWMTDGPPARVVINEY 127

Query: 131 VCIAHDFFYGDEPKFINAVLDKVSR 155
           + +AH F  GD  +  NAVLD+++R
Sbjct: 128 LDVAHGFLEGDAVQMGNAVLDRIAR 152


>gi|149202343|ref|ZP_01879316.1| transcription antitermination factor NusB [Roseovarius sp. TM1035]
 gi|149144441|gb|EDM32472.1| transcription antitermination factor NusB [Roseovarius sp. TM1035]
          Length = 160

 Score = 89.7 bits (221), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 51/142 (35%), Positives = 82/142 (57%), Gaps = 4/142 (2%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           +  ARL AVQAL+Q++  G S+  +  E+  +RF A+ +  V+     VDL  FR ++  
Sbjct: 16  KSAARLYAVQALFQMEHSGQSSDTVSEEFLDFRFGAEVDEGVDMAEGDVDL--FRKLLDD 73

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
            +  +  ID +    L  KW  +R+D  L ++ RA   EL++  + P +V+I EYV +A 
Sbjct: 74  AVSWQAKIDQMTDRALVAKWPIARIDPTLRALFRAAGAELVQSDT-PPKVVIMEYVDVAK 132

Query: 136 DFFY-GDEPKFINAVLDKVSRK 156
            F+  G E KF+NAVLD ++R+
Sbjct: 133 AFYPDGKESKFVNAVLDHMARE 154


>gi|85704976|ref|ZP_01036076.1| transcription antitermination factor NusB [Roseovarius sp. 217]
 gi|85670298|gb|EAQ25159.1| transcription antitermination factor NusB [Roseovarius sp. 217]
          Length = 160

 Score = 89.7 bits (221), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 51/142 (35%), Positives = 83/142 (58%), Gaps = 4/142 (2%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           +  ARL AVQAL+Q++  G ++  +  E+  +RF A+ +  V+     VDL  FR ++  
Sbjct: 16  KSAARLYAVQALFQMEHSGQTSDVVREEFLDFRFGAEVDEGVDMAEGDVDL--FRKLLDD 73

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
            ++ +  ID +    L  KW  +R+D  L ++ RA   EL+E  + P +V+I EYV +A 
Sbjct: 74  AVNWQAKIDQMTDRALVAKWPIARIDPTLRALFRAAGAELVESDT-PPKVVIMEYVDVAK 132

Query: 136 DFF-YGDEPKFINAVLDKVSRK 156
            F+  G E KF+NAVLD ++R+
Sbjct: 133 AFYPAGKESKFVNAVLDHMARE 154


>gi|83311445|ref|YP_421709.1| transcription termination factor [Magnetospirillum magneticum
           AMB-1]
 gi|119390781|sp|Q2W4S5|NUSB_MAGMM RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|82946286|dbj|BAE51150.1| Transcription termination factor [Magnetospirillum magneticum
           AMB-1]
          Length = 156

 Score = 89.7 bits (221), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 46/141 (32%), Positives = 73/141 (51%), Gaps = 5/141 (3%)

Query: 15  RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74
           +R  ARLAAVQ LYQ+++ G  T   + + +  R       + +      D      ++ 
Sbjct: 10  KRSAARLAAVQVLYQMEMTGADTERALQDAKDRRAA-----EPKGRMADPDNSLLNQVVR 64

Query: 75  GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134
           GV  + + ID  +   L+  W+  RL+ +L +I+RAG  EL      P  V ISE+V +A
Sbjct: 65  GVSAQLEDIDGHVGRALSGDWTVERLEAVLRAIVRAGAWELSARPQTPARVCISEWVDVA 124

Query: 135 HDFFYGDEPKFINAVLDKVSR 155
           H F+ G EP  +N VLD +++
Sbjct: 125 HAFYSGPEPGLVNGVLDHLAQ 145


>gi|23014664|ref|ZP_00054469.1| COG0781: Transcription termination factor [Magnetospirillum
           magnetotacticum MS-1]
          Length = 156

 Score = 88.6 bits (218), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 48/152 (31%), Positives = 76/152 (50%), Gaps = 8/152 (5%)

Query: 15  RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74
           +R  ARLAAVQ LYQ+++ G      + + +  R       + +      D      ++ 
Sbjct: 10  KRSAARLAAVQVLYQMEMTGTDCERALQDAKDRRAA-----EPKGRMADPDSSLLNQVVR 64

Query: 75  GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134
           GV  + + ID  +   L+  W+  RL+ +L +I+R G  EL      P  V ISE+V +A
Sbjct: 65  GVSAQLEDIDRHVGGALSGDWTVERLEAVLRAIIRGGAWELSARPQTPARVCISEWVDVA 124

Query: 135 HDFFYGDEPKFINAVLDKVS---RKEEIKRSG 163
           H F+ G EP  +NAVLD ++   R  E+ + G
Sbjct: 125 HAFYSGPEPGLVNAVLDHLAQTLRGGEMGKGG 156


>gi|6580774|gb|AAF18280.1| N-utilization substance protein B [Zymomonas mobilis subsp. mobilis
           ZM4]
          Length = 129

 Score = 88.2 bits (217), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 44/117 (37%), Positives = 67/117 (57%), Gaps = 3/117 (2%)

Query: 40  IISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSR 99
           ++ E+  YR  A  E   ++ Y   +  +F  I+ GV  R + ID +IS  L+E+WS  R
Sbjct: 9   LLDEFHQYRLGATIE---DATYTKAEPSFFDDIVRGVGTRCEEIDRVISENLSERWSLDR 65

Query: 100 LDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRK 156
           LD  +  ILRAG  EL+    VP   +ISEY+ +A+ F+   E  F+N +LD V++K
Sbjct: 66  LDRPMRQILRAGTYELLARPDVPTATVISEYIDVANAFYDRQEKNFVNGLLDTVAKK 122


>gi|126738747|ref|ZP_01754443.1| transcription antitermination factor NusB [Roseobacter sp.
           SK209-2-6]
 gi|126719928|gb|EBA16635.1| transcription antitermination factor NusB [Roseobacter sp.
           SK209-2-6]
          Length = 160

 Score = 87.8 bits (216), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 49/142 (34%), Positives = 81/142 (57%), Gaps = 5/142 (3%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           +  +RL AVQAL+Q++  G +  +II E+E +RF A  + D        D + FR ++  
Sbjct: 17  KSASRLYAVQALFQMEQSGQTFDQIIVEFEDHRFGAVYDGDE---MAEGDTKLFRKLVED 73

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
            ++ +  +D +    L  KW  +R+D  L ++ RA   EL +  + P +V+I+E+V IA 
Sbjct: 74  AVNYQAPVDQMTDRALVAKWPIARIDPTLRALFRAAGAELTQSET-PPKVVINEFVDIAR 132

Query: 136 DFFY-GDEPKFINAVLDKVSRK 156
            FF  G E KF+N VLD ++R+
Sbjct: 133 AFFPEGKESKFVNGVLDHMARE 154


>gi|86137878|ref|ZP_01056454.1| transcription antitermination factor NusB [Roseobacter sp. MED193]
 gi|85825470|gb|EAQ45669.1| transcription antitermination factor NusB [Roseobacter sp. MED193]
          Length = 160

 Score = 87.4 bits (215), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 49/142 (34%), Positives = 81/142 (57%), Gaps = 5/142 (3%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           +  ARL AVQAL+Q++    +  ++I+E+E +RF A  E   +      D   FR ++  
Sbjct: 17  KSAARLYAVQALFQMEHSDLTFDKVIAEFENHRFGAVYE---DGEMAEGDTGLFRKLLKD 73

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
            ++ +  ID +    L  KW  +R+D  L ++ RA   E  + ++ P +V+I+E+V IA 
Sbjct: 74  AVNFQAPIDQMTDRALVAKWPIARIDPTLRALFRAAGAEFTQSNT-PPKVVINEFVDIAR 132

Query: 136 DFFY-GDEPKFINAVLDKVSRK 156
            FF  G E KF+NAVLD ++R+
Sbjct: 133 AFFPEGKEAKFVNAVLDHMARE 154


>gi|294678589|ref|YP_003579204.1| transcription antitermination factor NusB [Rhodobacter capsulatus
           SB 1003]
 gi|294477409|gb|ADE86797.1| transcription antitermination factor NusB [Rhodobacter capsulatus
           SB 1003]
          Length = 165

 Score = 86.7 bits (213), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 49/142 (34%), Positives = 78/142 (54%), Gaps = 4/142 (2%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           R  ARL AVQAL+Q++  G     +  E+E++RF   T+   E      DL  FR ++  
Sbjct: 21  RSAARLYAVQALFQMEAAGQGVDRVAREFESFRFGMVTDEGEELAEGDYDL--FRRLLDD 78

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
            +  +  ID      L   W   R+D +L ++ RA   E++   + P++V+I+E+V +A 
Sbjct: 79  AVMWQAKIDQTTDRALVATWPIERIDPVLRALFRAAGAEMVNP-ATPIKVVINEFVEVAR 137

Query: 136 DFFY-GDEPKFINAVLDKVSRK 156
            FF  G E KF+NAVLD ++R+
Sbjct: 138 AFFPEGKETKFVNAVLDHMARE 159


>gi|163793217|ref|ZP_02187193.1| NusB antitermination factor [alpha proteobacterium BAL199]
 gi|159181863|gb|EDP66375.1| NusB antitermination factor [alpha proteobacterium BAL199]
          Length = 139

 Score = 85.5 bits (210), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 43/126 (34%), Positives = 68/126 (53%), Gaps = 3/126 (2%)

Query: 30  IDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISS 89
           +++ G S  E++ E+   RF    E          D ++F  ++ GV      +D +++ 
Sbjct: 1   MEVSGKSGHEVVPEFVGRRFAGLIE---GGDMAPADPKFFERLVLGVAGEMPTLDGMLAD 57

Query: 90  CLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAV 149
           CL  +    RL+++L +I R G  EL+    VPV V+ISEYV + H FF G EP  +N V
Sbjct: 58  CLQPEGHLERLEVVLRAIFRLGTYELLSVDDVPVRVVISEYVDLTHAFFAGREPGLVNGV 117

Query: 150 LDKVSR 155
           LDK++R
Sbjct: 118 LDKIAR 123


>gi|149181858|ref|ZP_01860347.1| transcription antitermination protein NusB [Bacillus sp. SG-1]
 gi|148850397|gb|EDL64558.1| transcription antitermination protein NusB [Bacillus sp. SG-1]
          Length = 133

 Score = 85.5 bits (210), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 56/143 (39%), Positives = 79/143 (55%), Gaps = 22/143 (15%)

Query: 15  RRGIARLAAVQALYQIDIIGCSTTEIISE-YETYRFCADTELDVESVYLHVDLEWFRVII 73
           +R  AR  A+QAL+Q+D+ G +  E ++  YE      DT  D          E+   ++
Sbjct: 2   KRRTAREKALQALFQMDMSGMTADEALTNVYE------DTPSD----------EYLENLV 45

Query: 74  HGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCI 133
           +G  + K+ ID LI   L EKWSF RL  +  +ILR  V EL+E   VP +V+I+E + I
Sbjct: 46  NGATENKEKIDGLIKENL-EKWSFDRLAKVDRNILRVAVYELLEADDVPSKVVINEAIEI 104

Query: 134 AHDFFYGDEP--KFINAVLDKVS 154
           A    YGD+   KFIN VL KV+
Sbjct: 105 AK--TYGDDQSGKFINGVLSKVN 125


>gi|110679100|ref|YP_682107.1| N utilization substance protein B-like protein, putative
           [Roseobacter denitrificans OCh 114]
 gi|109455216|gb|ABG31421.1| N utilization substance protein B-like protein, putative
           [Roseobacter denitrificans OCh 114]
          Length = 145

 Score = 85.5 bits (210), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 50/142 (35%), Positives = 77/142 (54%), Gaps = 5/142 (3%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           +  ARL AVQAL+Q++  G +   +  E+  +RF      D + + L  D++ F  +I G
Sbjct: 2   KSAARLYAVQALFQMEHSGQTIEAVRREFLDHRFG--ETYDGQEM-LDGDVDLFGAVIEG 58

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
            ++ +  ID +    L  KW   R+D  L ++ RA   EL      P +V+ISEYV +A 
Sbjct: 59  AVNYQAPIDQMTDRALVAKWPLGRIDPTLRALFRAAGAEL-NGKDTPPKVVISEYVDVAR 117

Query: 136 DFFY-GDEPKFINAVLDKVSRK 156
            FF  G EPK +N VLD ++R+
Sbjct: 118 AFFEDGKEPKLVNGVLDHMARE 139


>gi|56696640|ref|YP_167001.1| transcription antitermination factor NusB [Ruegeria pomeroyi DSS-3]
 gi|56678377|gb|AAV95043.1| transcription antitermination factor NusB [Ruegeria pomeroyi DSS-3]
          Length = 160

 Score = 85.5 bits (210), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 52/158 (32%), Positives = 84/158 (53%), Gaps = 6/158 (3%)

Query: 1   MTIQDNKKDLKLSHR-RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVES 59
           M+  D  K +    + +  ARL AVQAL+Q++  G +   ++SE+  +RF A  E D   
Sbjct: 1   MSQSDTPKPVNRKRQMKSAARLYAVQALFQMEHSGQTVESVVSEFLEHRFGAVYEGD--- 57

Query: 60  VYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECH 119
                D   FR ++   ++ +  ID +    L  KW  +R+D  L ++ RA   E  + +
Sbjct: 58  ELAEGDAALFRALVGDAVNNQALIDQMTDRALVAKWPIARIDPTLRALFRAAGAEFSQ-N 116

Query: 120 SVPVEVIISEYVCIAHDFFY-GDEPKFINAVLDKVSRK 156
             P +V+I+E+V IA  FF  G E  F+NAVLD ++R+
Sbjct: 117 DTPPKVVITEFVDIARAFFPEGRETSFVNAVLDHMARE 154


>gi|258542345|ref|YP_003187778.1| transcription antitermination factor NusB [Acetobacter pasteurianus
           IFO 3283-01]
 gi|256633423|dbj|BAH99398.1| transcription antitermination factor NusB [Acetobacter pasteurianus
           IFO 3283-01]
 gi|256636482|dbj|BAI02451.1| transcription antitermination factor NusB [Acetobacter pasteurianus
           IFO 3283-03]
 gi|256639535|dbj|BAI05497.1| transcription antitermination factor NusB [Acetobacter pasteurianus
           IFO 3283-07]
 gi|256642591|dbj|BAI08546.1| transcription antitermination factor NusB [Acetobacter pasteurianus
           IFO 3283-22]
 gi|256645646|dbj|BAI11594.1| transcription antitermination factor NusB [Acetobacter pasteurianus
           IFO 3283-26]
 gi|256648699|dbj|BAI14640.1| transcription antitermination factor NusB [Acetobacter pasteurianus
           IFO 3283-32]
 gi|256651752|dbj|BAI17686.1| transcription antitermination factor NusB [Acetobacter pasteurianus
           IFO 3283-01-42C]
 gi|256654743|dbj|BAI20670.1| transcription antitermination factor NusB [Acetobacter pasteurianus
           IFO 3283-12]
          Length = 174

 Score = 84.7 bits (208), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 58/165 (35%), Positives = 88/165 (53%), Gaps = 9/165 (5%)

Query: 3   IQDNKKDLKLSHR-RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVY 61
           +QD  + LK + R R  AR+AAVQAL+QID  G     +I ++  +RF   T LD  S  
Sbjct: 4   LQDEPR-LKGAQRPRTAARVAAVQALFQIDQNGDRPENVIEQFLVHRFG--TTLDGASYE 60

Query: 62  ----LHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIE 117
                  D + F  I+  V   +  +   +   L E W  +RLD +L ++L A   E  E
Sbjct: 61  DGCIPEADTQLFSHIVRLVTSMRTQVTQEVEKTLPETWPIARLDPVLRALLLAAAAEATE 120

Query: 118 CHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRS 162
             + P  V+I+EY+ +AH FF GDEP+ +N VLD + ++   +R+
Sbjct: 121 GDA-PAPVLINEYMDVAHAFFSGDEPRLVNGVLDTLFKRLAAERN 164


>gi|126729172|ref|ZP_01744986.1| transcription antitermination factor NusB [Sagittula stellata E-37]
 gi|126710162|gb|EBA09214.1| transcription antitermination factor NusB [Sagittula stellata E-37]
          Length = 168

 Score = 84.7 bits (208), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 49/142 (34%), Positives = 80/142 (56%), Gaps = 3/142 (2%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           R  +RL AVQALYQ++  G    ++  E+  +RF A  + D  +  L  D+  F  +I  
Sbjct: 23  RSASRLYAVQALYQMEQSGIPVDKVRREFLEFRFGA-VDDDDGTEMLDGDVSLFSHVIEE 81

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
            ++ +  +D +    L  KW  +R+D +L ++ RA   EL+   + P +V+I EYV +A 
Sbjct: 82  ALNWQAKVDQMTDRALVAKWPIARIDPVLRALFRAAGAELVATDT-PPKVVIVEYVDVAV 140

Query: 136 DFFY-GDEPKFINAVLDKVSRK 156
            F+  G E KF+NAVLD ++R+
Sbjct: 141 AFYPDGKEAKFVNAVLDHMARE 162


>gi|254516860|ref|ZP_05128918.1| transcription antitermination factor NusB [gamma proteobacterium
           NOR5-3]
 gi|219674365|gb|EED30733.1| transcription antitermination factor NusB [gamma proteobacterium
           NOR5-3]
          Length = 150

 Score = 84.3 bits (207), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 54/142 (38%), Positives = 78/142 (54%), Gaps = 13/142 (9%)

Query: 15  RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74
           RR  AR  A+QALYQ  + G   ++I +E+ T     D + +V      VDLE+F+ +IH
Sbjct: 12  RRRKARHYALQALYQWHMAGARPSDIEAEFRT-----DYDFEV------VDLEYFQALIH 60

Query: 75  GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134
           GV    Q +D L+   L  +     LD I  S+LR G  EL +   VP  V+I+E V +A
Sbjct: 61  GVPPLAQELDSLLEPLLDRE--LRELDPIERSLLRMGGFELRDRIDVPYRVVINESVALA 118

Query: 135 HDFFYGDEPKFINAVLDKVSRK 156
             F   +  K+IN VLDK++R+
Sbjct: 119 KKFGAAESYKYINGVLDKLARQ 140


>gi|163733974|ref|ZP_02141415.1| N utilization substance protein B-like protein, putative
           [Roseobacter litoralis Och 149]
 gi|161392510|gb|EDQ16838.1| N utilization substance protein B-like protein, putative
           [Roseobacter litoralis Och 149]
          Length = 160

 Score = 84.3 bits (207), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 53/152 (34%), Positives = 82/152 (53%), Gaps = 8/152 (5%)

Query: 9   DLKLSHRRGI---ARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVD 65
           +L  + RR +   ARL AVQAL+Q++  G +   +  E+  +RF      D + + L  D
Sbjct: 7   NLSGNQRRKMKSAARLYAVQALFQMEHSGQTIEIVRREFLEHRFG--ETYDGQEM-LDGD 63

Query: 66  LEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEV 125
           ++ F  +I G ++ +  ID +    L  KW   R+D  L ++ RA   EL      P +V
Sbjct: 64  VDLFDTVIEGAVNFQAPIDQMTDRALVAKWPLGRIDPTLRALFRAAGAEL-NGKDTPPKV 122

Query: 126 IISEYVCIAHDFFY-GDEPKFINAVLDKVSRK 156
           +ISEYV +A  FF  G EPK +N VLD ++R+
Sbjct: 123 VISEYVDVARAFFEDGKEPKLVNGVLDHMARE 154


>gi|332185633|ref|ZP_08387381.1| transcription antitermination factor NusB [Sphingomonas sp. S17]
 gi|332014611|gb|EGI56668.1| transcription antitermination factor NusB [Sphingomonas sp. S17]
          Length = 151

 Score = 84.3 bits (207), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 51/128 (39%), Positives = 72/128 (56%), Gaps = 3/128 (2%)

Query: 28  YQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLI 87
           YQ D+       ++ E+  +R  A  E DVE  Y   D+++F  I+ GV  R   IDL+I
Sbjct: 23  YQHDMEKTPLAALLHEFHNHRIGATIE-DVE--YADADIDFFDDIVKGVHARLGEIDLMI 79

Query: 88  SSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFIN 147
              L   W+ SRLD  + +ILRAG  ELI    VPV  +ISEYV +AH F+   E  F+N
Sbjct: 80  EGKLASGWTLSRLDRPMKAILRAGTYELIARRDVPVGAVISEYVDVAHAFYEKRESGFVN 139

Query: 148 AVLDKVSR 155
            +LD +++
Sbjct: 140 GLLDAIAK 147


>gi|329113506|ref|ZP_08242287.1| N utilization substance protein B-like protein [Acetobacter pomorum
           DM001]
 gi|326697331|gb|EGE48991.1| N utilization substance protein B-like protein [Acetobacter pomorum
           DM001]
          Length = 174

 Score = 84.0 bits (206), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 58/165 (35%), Positives = 88/165 (53%), Gaps = 9/165 (5%)

Query: 3   IQDNKKDLKLSHR-RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVY 61
           +QD  + LK + R R  AR+AAVQAL+QID  G     +I ++  +RF   T LD  S  
Sbjct: 4   LQDEPR-LKGAQRPRTAARVAAVQALFQIDQNGDRPENVIEQFLVHRFG--TTLDGASYE 60

Query: 62  ----LHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIE 117
                  D + F  I+  V   +  +   +   L E W  +RLD +L ++L A   E  E
Sbjct: 61  DGCIPEADTQLFSHIVRLVTSLRTQVTQEVEKTLPETWPIARLDPVLRALLLAAAAEATE 120

Query: 118 CHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRS 162
             + P  V+I+EY+ +AH FF GDEP+ +N VLD + ++   +R+
Sbjct: 121 GDA-PAPVLINEYMDVAHAFFSGDEPRLVNGVLDTLFKRLAAERN 164


>gi|119384293|ref|YP_915349.1| NusB antitermination factor [Paracoccus denitrificans PD1222]
 gi|119374060|gb|ABL69653.1| NusB antitermination factor [Paracoccus denitrificans PD1222]
          Length = 166

 Score = 83.6 bits (205), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 49/137 (35%), Positives = 73/137 (53%), Gaps = 3/137 (2%)

Query: 21  LAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRK 80
           L AVQAL+Q++  G S   +  E+  +R   + E D + V    D   F  I+   +  +
Sbjct: 26  LYAVQALFQMEAAGQSADRVQREFLNWRIGREDE-DDDIVSAEADQALFTRIVDDAVTWQ 84

Query: 81  QHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY- 139
             ID +    L  KW   R+D +L S+ RA   EL+     P +V+I+EYV +A  FF  
Sbjct: 85  SKIDQMTDRALVAKWPIDRIDPVLRSVFRAAGAELV-TPKTPPKVVITEYVRLAQTFFAE 143

Query: 140 GDEPKFINAVLDKVSRK 156
           G E KF+NAVLD ++R+
Sbjct: 144 GRESKFVNAVLDHMARE 160


>gi|254488295|ref|ZP_05101500.1| transcription antitermination factor NusB [Roseobacter sp. GAI101]
 gi|214045164|gb|EEB85802.1| transcription antitermination factor NusB [Roseobacter sp. GAI101]
          Length = 159

 Score = 83.6 bits (205), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 48/142 (33%), Positives = 80/142 (56%), Gaps = 5/142 (3%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           +  +RL AVQAL+Q++    S   + +E+  +RF A  +    +  +  D+  F  ++  
Sbjct: 16  KSASRLYAVQALFQMEHSSQSFDTVRTEFLEHRFGATYD---GAEMIDGDIRHFADVLET 72

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
            ++ +  ID +    L  KW  +R+D  L ++ RA   EL +    P +V+I+EYV +A 
Sbjct: 73  AVNYQAAIDQMTDRALVAKWPIARIDPTLRALFRAAGAELRDT-GTPPKVVITEYVDVAR 131

Query: 136 DFFYG-DEPKFINAVLDKVSRK 156
            FF G DEPKF+NAVLD ++R+
Sbjct: 132 AFFEGSDEPKFVNAVLDHMARE 153


>gi|83941142|ref|ZP_00953604.1| transcription antitermination factor NusB [Sulfitobacter sp. EE-36]
 gi|83846962|gb|EAP84837.1| transcription antitermination factor NusB [Sulfitobacter sp. EE-36]
          Length = 159

 Score = 83.2 bits (204), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 49/142 (34%), Positives = 79/142 (55%), Gaps = 5/142 (3%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           +  +RL AVQAL+Q++    S   +  E+  +RF A    D + + +  D+  F  ++  
Sbjct: 16  KSASRLYAVQALFQMEHSSQSFDTVRKEFLEHRFGAS--YDGQEM-IDGDIRHFADLLET 72

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
            ++ +  ID +    L  KW+ +R+D  L ++ RA   EL      P  V+I+EYV +A 
Sbjct: 73  AVNYQAAIDQMTDRALVAKWAIARIDPTLRALFRAAGAEL-RAQETPPRVVINEYVDVAR 131

Query: 136 DFFYG-DEPKFINAVLDKVSRK 156
            FF G DEPKF+NAVLD ++R+
Sbjct: 132 AFFEGGDEPKFVNAVLDHMARE 153


>gi|148555686|ref|YP_001263268.1| NusB antitermination factor [Sphingomonas wittichii RW1]
 gi|148500876|gb|ABQ69130.1| NusB antitermination factor [Sphingomonas wittichii RW1]
          Length = 151

 Score = 83.2 bits (204), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 45/128 (35%), Positives = 67/128 (52%), Gaps = 3/128 (2%)

Query: 28  YQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLI 87
           YQ ++ G     ++ E+  +R  A  E DVE  Y   ++ +F  ++ GV  R+  ID  I
Sbjct: 23  YQQEMEGTPLAALLDEFHQHRLGATIE-DVE--YAAAEVAFFDDLVKGVDARRAEIDAAI 79

Query: 88  SSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFIN 147
            + L   W+  RLD  +  ILR G  ELI    VP   +ISEYV +A  F+   E  F+N
Sbjct: 80  GARLASGWTLERLDRPMRQILRVGAYELIARPDVPTATVISEYVDVADAFYDKKEKGFVN 139

Query: 148 AVLDKVSR 155
            VLD +++
Sbjct: 140 GVLDGIAK 147


>gi|288957855|ref|YP_003448196.1| N utilization substance protein B [Azospirillum sp. B510]
 gi|288910163|dbj|BAI71652.1| N utilization substance protein B [Azospirillum sp. B510]
          Length = 196

 Score = 82.8 bits (203), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 41/131 (31%), Positives = 72/131 (54%), Gaps = 9/131 (6%)

Query: 28  YQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLI 87
           YQID+       ++ E+  +R   + + D    ++  D + F  I+ G + R+  +D ++
Sbjct: 53  YQIDLAQAPVENVVGEFVAHRLGEEIDGDK---FVAGDPQLFADIVRGAIHRRAEVDGVL 109

Query: 88  SSCLTEKWSFSRLDMILCSILRAGVLEL---IECHSVPVEVIISEYVCIAHDFFYGDEPK 144
            + L  ++   RL+++L +ILRAG  E+   ++ H     ++ISEYV +A  FF G EP 
Sbjct: 110 GAALDPRFPLDRLELLLRAILRAGAYEIAVHLDTHP---RILISEYVDVARAFFSGREPA 166

Query: 145 FINAVLDKVSR 155
            +N VLD V+R
Sbjct: 167 MVNGVLDHVAR 177


>gi|83955701|ref|ZP_00964281.1| transcription antitermination factor NusB [Sulfitobacter sp.
           NAS-14.1]
 gi|83839995|gb|EAP79171.1| transcription antitermination factor NusB [Sulfitobacter sp.
           NAS-14.1]
          Length = 159

 Score = 82.8 bits (203), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 49/142 (34%), Positives = 79/142 (55%), Gaps = 5/142 (3%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           +  +RL AVQAL+Q++    S   +  E+  +RF A    D + + +  D+  F  ++  
Sbjct: 16  KSASRLYAVQALFQMEHSSQSFDTVRKEFLEHRFGA--TYDGQEM-IDGDIRHFADLLET 72

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
            ++ +  ID +    L  KW+ +R+D  L ++ RA   EL      P  V+I+EYV +A 
Sbjct: 73  AVNYQAAIDQMTDRALVAKWAIARIDPTLRALFRAAGAEL-RAQETPPRVVINEYVDVAR 131

Query: 136 DFFYG-DEPKFINAVLDKVSRK 156
            FF G DEPKF+NAVLD ++R+
Sbjct: 132 AFFEGGDEPKFVNAVLDHMARE 153


>gi|88704433|ref|ZP_01102147.1| N utilization substance protein B [Congregibacter litoralis KT71]
 gi|88701484|gb|EAQ98589.1| N utilization substance protein B [Congregibacter litoralis KT71]
          Length = 150

 Score = 82.8 bits (203), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 55/146 (37%), Positives = 80/146 (54%), Gaps = 13/146 (8%)

Query: 11  KLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFR 70
           +L  RR  AR  A+QALYQ  + G + T+I +E+ T     D +  V      VDLE+F+
Sbjct: 8   ELVARRRKARHYALQALYQWHMAGATATDIEAEFRT-----DYDFSV------VDLEYFQ 56

Query: 71  VIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEY 130
            +IHGV    + +D L+   L  +     LD I  S+LR G  EL +   VP  V+I+E 
Sbjct: 57  ALIHGVPPLVEELDSLLEPLLDRE--IRELDPIERSLLRMGGFELRDRIDVPYRVVINES 114

Query: 131 VCIAHDFFYGDEPKFINAVLDKVSRK 156
           V +A  F   +  K+IN VLDK++R+
Sbjct: 115 VALAKKFGAAESYKYINGVLDKLARQ 140


>gi|85373345|ref|YP_457407.1| transcription termination factor [Erythrobacter litoralis HTCC2594]
 gi|84786428|gb|ABC62610.1| transcription termination factor [Erythrobacter litoralis HTCC2594]
          Length = 125

 Score = 80.5 bits (197), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 44/117 (37%), Positives = 66/117 (56%), Gaps = 2/117 (1%)

Query: 40  IISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSR 99
           ++ E+  +R   + E D E  Y   ++++F  I+ GV  R   ID L+++ L   W+ +R
Sbjct: 9   LLDEFHQHRLGREIE-DGEH-YADAEVDFFDDIVSGVDARSDEIDELVTAKLAAGWTLAR 66

Query: 100 LDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRK 156
           LD  +  ILRAG  ELI    VP    ISEYV +A  FF   E KF+N +LD V+++
Sbjct: 67  LDKTMVQILRAGTYELIARADVPKAAAISEYVDVAKAFFDDREAKFVNGLLDAVAKQ 123


>gi|114800202|ref|YP_760752.1| transcription antitermination factor NusB [Hyphomonas neptunium
           ATCC 15444]
 gi|119390777|sp|Q0C0J1|NUSB_HYPNA RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|114740376|gb|ABI78501.1| transcription antitermination factor NusB [Hyphomonas neptunium
           ATCC 15444]
          Length = 154

 Score = 80.5 bits (197), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 47/133 (35%), Positives = 70/133 (52%), Gaps = 5/133 (3%)

Query: 24  VQALYQIDIIGCSTTEIISEYETYRFCADTE-LDVESVYLHVDLEWFRVIIHGVMDRKQH 82
           VQALY+++    S    I E+   R     +   VE      D + F+ I++ V++ +  
Sbjct: 22  VQALYEMEQTEKSARATIREFMEDRLGLGPDGTPVEDA----DPDLFKSIVNSVVEHQAK 77

Query: 83  IDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDE 142
           ID  I + L E W  +RLD  + ++LRAG  E I    +   +I+SEYV +AHDFF   +
Sbjct: 78  IDTAILARLAEGWKLTRLDATMRALLRAGAAEFIAHQELSDAIILSEYVSLAHDFFDEGD 137

Query: 143 PKFINAVLDKVSR 155
            KF NAVL  + R
Sbjct: 138 AKFANAVLQNMGR 150


>gi|149916259|ref|ZP_01904780.1| transcription antitermination factor NusB [Roseobacter sp. AzwK-3b]
 gi|149809919|gb|EDM69770.1| transcription antitermination factor NusB [Roseobacter sp. AzwK-3b]
          Length = 168

 Score = 79.7 bits (195), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 46/142 (32%), Positives = 77/142 (54%), Gaps = 5/142 (3%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           R  AR  AVQAL+Q+++   +   +I E+E +RF A  +   E   +  D   F  ++  
Sbjct: 25  RSAARFYAVQALFQMEVSQQTVDAVIREFEDHRFGAHYD---EGDMVEGDPVLFGQLMRD 81

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
            ++ +  ID +    L  KW  +R+D  L ++ RA   E+ +  + P +V+I E+V IA 
Sbjct: 82  AVNWQASIDQMTDRALVAKWPIARIDPTLRALFRAAGAEMTQSDT-PPKVVIMEFVDIAK 140

Query: 136 DFFY-GDEPKFINAVLDKVSRK 156
            F+  G E  F+NAVLD ++R+
Sbjct: 141 SFYPEGKESSFVNAVLDHMARE 162


>gi|157803349|ref|YP_001491898.1| transcription antitermination protein NusB [Rickettsia canadensis
           str. McKiel]
 gi|157784612|gb|ABV73113.1| transcription antitermination protein NusB [Rickettsia canadensis
           str. McKiel]
          Length = 178

 Score = 79.3 bits (194), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 42/150 (28%), Positives = 84/150 (56%), Gaps = 8/150 (5%)

Query: 14  HRRGIARLAAVQALYQIDIIGCSTTE-----IISEYETYRFCADTELDVESVYLHVDLEW 68
           +++ IAR+AAVQA+YQ  +      E     ++S Y+      D     E++ + + +  
Sbjct: 29  NKKSIARIAAVQAMYQHILQDNQDMEYILQNVLSFYQNNNSITDLS---ENLKISLSISH 85

Query: 69  FRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIIS 128
           F++++  V +    +D +I + LT     + + ++L ++ R  + EL+ CH+ P +V+I+
Sbjct: 86  FKMLVKSVFENFNKLDEMIDNHLTNDKDPAHMPILLRALFRVSICELLFCHTTPAKVVIN 145

Query: 129 EYVCIAHDFFYGDEPKFINAVLDKVSRKEE 158
           EY  IA+D     E  F+N+VLDK++++ +
Sbjct: 146 EYTDIANDMLNEHEIGFVNSVLDKIAKENK 175


>gi|320322797|gb|EFW78890.1| transcription antitermination protein NusB [Pseudomonas syringae
           pv. glycinea str. B076]
          Length = 165

 Score = 77.8 bits (190), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 55/169 (32%), Positives = 87/169 (51%), Gaps = 23/169 (13%)

Query: 2   TIQDNKKDLK-------LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTE 54
           T Q N +D K        S +R  AR  A QALYQ  + G +  EI +++          
Sbjct: 6   TDQFNPRDAKSPEAAKGKSAKRREARQMATQALYQWHMAGHALNEIEAQFR--------- 56

Query: 55  LDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLE 114
             V++ + +VD  +FR ++HGV   K  ID  +S CL    +   LD++  ++LR    E
Sbjct: 57  --VDNDFSNVDGAYFRELLHGVATNKTEIDTALSPCLD--LTIEELDLVELAVLRLSTFE 112

Query: 115 LIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVS---RKEEIK 160
           L++   VP  V+I+E + +A  +   D  KF+N VLDK++   R+ E+K
Sbjct: 113 LLKRIDVPYRVVINEGIELAKVYGSTDGHKFVNGVLDKLAPRLREVEVK 161


>gi|302189354|ref|ZP_07266027.1| transcription antitermination protein NusB [Pseudomonas syringae
           pv. syringae 642]
          Length = 165

 Score = 77.8 bits (190), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 53/162 (32%), Positives = 82/162 (50%), Gaps = 20/162 (12%)

Query: 2   TIQDNKKDLK-------LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTE 54
           T Q N +D K        S +R  AR  A QALYQ  + G S  EI +++          
Sbjct: 6   TDQFNPRDAKSPEAAKGKSAKRREARQMATQALYQWHMAGHSLNEIEAQFR--------- 56

Query: 55  LDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLE 114
             V++ + +VD  +FR ++HGV   K  ID  +S CL    +   LD +  ++LR    E
Sbjct: 57  --VDNDFSNVDGTYFRELLHGVATNKTEIDTALSPCL--DLTIEELDPVELAVLRLSTFE 112

Query: 115 LIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRK 156
           L++   VP  V+I+E + +A  +   D  KF+N VLDK++ +
Sbjct: 113 LLKRIDVPYRVVINEGIELAKVYGSTDGHKFVNGVLDKLAPR 154


>gi|163747437|ref|ZP_02154789.1| transcription antitermination factor NusB [Oceanibulbus indolifex
           HEL-45]
 gi|161379290|gb|EDQ03707.1| transcription antitermination factor NusB [Oceanibulbus indolifex
           HEL-45]
          Length = 158

 Score = 77.4 bits (189), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 46/142 (32%), Positives = 76/142 (53%), Gaps = 5/142 (3%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           +  +RL AVQAL+Q++    +   +  E+  +RF A  E D        D++ F  ++  
Sbjct: 15  KSASRLYAVQALFQMEHSAQTVDVVRHEFIDHRFGAVYEGDE---MQEGDVDHFSRVLED 71

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
            ++ +  ID + +  +  KW+ +R+D  L ++ RA   E       P  V+I EYV +AH
Sbjct: 72  AVNYQAPIDQMANRAIVAKWAIARIDPTLRALFRAAGAEF-RHDETPPRVVIKEYVDVAH 130

Query: 136 DFFY-GDEPKFINAVLDKVSRK 156
            FF  G EP F+NAVLD ++R+
Sbjct: 131 AFFPEGREPSFVNAVLDHMARE 152


>gi|220934735|ref|YP_002513634.1| NusB antitermination factor [Thioalkalivibrio sp. HL-EbGR7]
 gi|219996045|gb|ACL72647.1| NusB antitermination factor [Thioalkalivibrio sp. HL-EbGR7]
          Length = 149

 Score = 77.0 bits (188), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 51/156 (32%), Positives = 81/156 (51%), Gaps = 16/156 (10%)

Query: 1   MTIQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESV 60
           MT  DN++   LSH R  +R  A+QALYQ  + G    +I+ +Y       D EL+    
Sbjct: 1   MTGPDNRR---LSHARRQSRRVAMQALYQWQLTGYHPKDILLQYRE-----DPELE---- 48

Query: 61  YLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHS 120
               D ++FR ++ GV ++   +D L++  +    S + LD +  +ILR    EL +   
Sbjct: 49  --KADADYFRELLLGVTEQVDELDELLAPQMDR--SVAELDPVERAILRLATFELKQRID 104

Query: 121 VPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRK 156
           +P  V+I+E V +   F   D  KF+N VLDK+ R+
Sbjct: 105 IPYRVVINEAVELTKKFGATDAHKFVNGVLDKLGRQ 140


>gi|157964229|ref|YP_001499053.1| transcription antitermination protein NusB [Rickettsia massiliae
           MTU5]
 gi|166918810|sp|A8F0S0|NUSB_RICM5 RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|157844005|gb|ABV84506.1| N utilization substance protein B [Rickettsia massiliae MTU5]
          Length = 156

 Score = 76.6 bits (187), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 42/148 (28%), Positives = 83/148 (56%), Gaps = 8/148 (5%)

Query: 14  HRRGIARLAAVQALYQI-----DIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEW 68
           +++ IAR+AAVQA+YQ      D +      ++S Y+      D     E++ + + +  
Sbjct: 7   NKKSIARIAAVQAIYQNILQNNDDMDDIMQNVLSFYQNNNSITDLP---ENLKISLSISH 63

Query: 69  FRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIIS 128
           F++++  V +    +D +I + LT     + + ++L ++LR  + EL+ C + P +V+I+
Sbjct: 64  FKMLVKSVFENINKLDEIIDNHLTNDKDPAHMPILLRALLRVSICELLFCPTTPAKVVIN 123

Query: 129 EYVCIAHDFFYGDEPKFINAVLDKVSRK 156
           EY  IA+D     E  F+N+VLDK++++
Sbjct: 124 EYTDIANDMLNEHEIGFVNSVLDKIAKE 151


>gi|71737269|ref|YP_276619.1| transcription antitermination protein NusB [Pseudomonas syringae
           pv. phaseolicola 1448A]
 gi|257483271|ref|ZP_05637312.1| transcription antitermination protein NusB [Pseudomonas syringae
           pv. tabaci ATCC 11528]
 gi|289629163|ref|ZP_06462117.1| transcription antitermination protein NusB [Pseudomonas syringae
           pv. aesculi str. NCPPB3681]
 gi|289647768|ref|ZP_06479111.1| transcription antitermination protein NusB [Pseudomonas syringae
           pv. aesculi str. 2250]
 gi|298488893|ref|ZP_07006917.1| Transcription termination protein NusB [Pseudomonas savastanoi pv.
           savastanoi NCPPB 3335]
 gi|119390796|sp|Q48DC2|NUSB_PSE14 RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|71557822|gb|AAZ37033.1| N utilization substance protein B [Pseudomonas syringae pv.
           phaseolicola 1448A]
 gi|298156568|gb|EFH97664.1| Transcription termination protein NusB [Pseudomonas savastanoi pv.
           savastanoi NCPPB 3335]
 gi|320330417|gb|EFW86396.1| transcription antitermination protein NusB [Pseudomonas syringae
           pv. glycinea str. race 4]
 gi|330869912|gb|EGH04621.1| transcription antitermination protein NusB [Pseudomonas syringae
           pv. aesculi str. 0893_23]
 gi|330874033|gb|EGH08182.1| transcription antitermination protein NusB [Pseudomonas syringae
           pv. glycinea str. race 4]
 gi|330888050|gb|EGH20711.1| transcription antitermination protein NusB [Pseudomonas syringae
           pv. mori str. 301020]
 gi|330988217|gb|EGH86320.1| transcription antitermination protein NusB [Pseudomonas syringae
           pv. lachrymans str. M301315]
 gi|331012494|gb|EGH92550.1| transcription antitermination protein NusB [Pseudomonas syringae
           pv. tabaci ATCC 11528]
          Length = 165

 Score = 76.6 bits (187), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 52/162 (32%), Positives = 82/162 (50%), Gaps = 20/162 (12%)

Query: 2   TIQDNKKDLK-------LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTE 54
           T Q N +D K        S +R  AR  A QALYQ  + G +  EI +++          
Sbjct: 6   TDQFNPRDAKSPEAAKGKSAKRREARQMATQALYQWHMAGHALNEIEAQFR--------- 56

Query: 55  LDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLE 114
             V++ + +VD  +FR ++HGV   K  ID  +S CL    +   LD +  ++LR    E
Sbjct: 57  --VDNDFSNVDGAYFRELLHGVATNKTEIDTALSPCLD--LTIEELDPVELAVLRLSTFE 112

Query: 115 LIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRK 156
           L++   VP  V+I+E + +A  +   D  KF+N VLDK++ +
Sbjct: 113 LLKRIDVPYRVVINEGIELAKVYGSTDGHKFVNGVLDKLAPR 154


>gi|330953122|gb|EGH53382.1| transcription antitermination protein NusB [Pseudomonas syringae
           Cit 7]
          Length = 165

 Score = 76.3 bits (186), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 52/162 (32%), Positives = 82/162 (50%), Gaps = 20/162 (12%)

Query: 2   TIQDNKKDLK-------LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTE 54
           T Q N +D K        S +R  AR  A QALYQ  + G +  EI +++          
Sbjct: 6   TDQFNPRDAKSPEAAKGKSAKRREARQMATQALYQRHMAGHALNEIEAQFR--------- 56

Query: 55  LDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLE 114
             V++ + +VD  +FR ++HGV   +  ID  +S CL    +   LD I  ++LR    E
Sbjct: 57  --VDNDFSNVDGPYFRELLHGVATNQTEIDAALSPCLD--LTIEELDPIELAVLRLSTFE 112

Query: 115 LIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRK 156
           L++   VP  V+I+E + +A  +   D  KF+N VLDK++ +
Sbjct: 113 LLKRIDVPYRVVINEGIELAKVYGSTDGHKFVNGVLDKLAPR 154


>gi|114771638|ref|ZP_01449042.1| transcription antitermination factor NusB [alpha proteobacterium
           HTCC2255]
 gi|114547710|gb|EAU50600.1| transcription antitermination factor NusB [alpha proteobacterium
           HTCC2255]
          Length = 151

 Score = 76.3 bits (186), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 43/142 (30%), Positives = 76/142 (53%), Gaps = 5/142 (3%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           +  +RL AVQAL+Q++       E+  ++  +RF A  E +    Y+  ++E F  ++  
Sbjct: 8   KSASRLYAVQALFQMEASEQGMNEVRDQFVNHRFGATLEGEE---YVEGNVELFEQLLFT 64

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
            ++++  ID +    L  KW   R+D  L ++ R    E I     P +V I E+V +A 
Sbjct: 65  AVNQQAAIDQMTDRALVAKWPIDRIDPTLRALFRTAGAEFI-IDDTPPKVAIVEFVDVAK 123

Query: 136 DFFY-GDEPKFINAVLDKVSRK 156
            FF  G+E +F+NA+LD ++R+
Sbjct: 124 AFFPDGNETRFVNAILDHMARE 145


>gi|15892127|ref|NP_359841.1| transcription antitermination protein NusB [Rickettsia conorii str.
           Malish 7]
 gi|20139047|sp|Q92J65|NUSB_RICCN RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|15619255|gb|AAL02742.1| N utilization substance protein B [Rickettsia conorii str. Malish
           7]
          Length = 156

 Score = 76.3 bits (186), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 42/148 (28%), Positives = 83/148 (56%), Gaps = 8/148 (5%)

Query: 14  HRRGIARLAAVQALYQI-----DIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEW 68
           +++ IAR+AAVQA+YQ      D +      ++S Y+      D     E++ + + +  
Sbjct: 7   NKKSIARIAAVQAIYQNILQNNDDMDDIMQNVLSFYQNNNAITDLP---ENLKISLSISH 63

Query: 69  FRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIIS 128
           F++++  V +    +D +I + LT     + + ++L ++LR  + EL+ C + P +V+I+
Sbjct: 64  FKMLVKSVFENIHKLDEIIDNHLTNDKDPAHMPILLRALLRVSICELLFCPTTPAKVVIN 123

Query: 129 EYVCIAHDFFYGDEPKFINAVLDKVSRK 156
           EY  IA+D     E  F+N+VLDK++++
Sbjct: 124 EYTDIANDMLNEHEIGFVNSVLDKIAKE 151


>gi|34580842|ref|ZP_00142322.1| N utilization substance protein B [Rickettsia sibirica 246]
 gi|229586404|ref|YP_002844905.1| transcription antitermination protein NusB [Rickettsia africae
           ESF-5]
 gi|259514889|sp|C3PMK2|NUSB_RICAE RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|28262227|gb|EAA25731.1| N utilization substance protein B [Rickettsia sibirica 246]
 gi|228021454|gb|ACP53162.1| N utilization substance protein B [Rickettsia africae ESF-5]
          Length = 156

 Score = 76.3 bits (186), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 45/152 (29%), Positives = 85/152 (55%), Gaps = 9/152 (5%)

Query: 14  HRRGIARLAAVQALYQI-----DIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEW 68
           +++ IAR+AAVQA+YQ      D +      ++S Y+      D     E++ + + +  
Sbjct: 7   NKKSIARIAAVQAIYQNILQNNDDMDDIMQNVLSFYQNNNSITDLP---ENLKISLSISH 63

Query: 69  FRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIIS 128
           F++++  V +    +D +I + LT     + + ++L ++LR  + EL+ C + P +V+I+
Sbjct: 64  FKMLVKSVFENIHKLDEIIDNHLTNDKDPAHMPILLRALLRVSICELLFCPTTPAKVVIN 123

Query: 129 EYVCIAHDFFYGDEPKFINAVLDKVSRKEEIK 160
           EY  IA+D     E  F+N+VLDK++ KE I+
Sbjct: 124 EYTDIANDMLNEHEIGFVNSVLDKIA-KEHIR 154


>gi|238650352|ref|YP_002916204.1| transcription antitermination protein NusB [Rickettsia peacockii
           str. Rustic]
 gi|259514892|sp|C4K0Q5|NUSB_RICPU RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|238624450|gb|ACR47156.1| transcription antitermination protein NusB [Rickettsia peacockii
           str. Rustic]
          Length = 156

 Score = 76.3 bits (186), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 42/148 (28%), Positives = 83/148 (56%), Gaps = 8/148 (5%)

Query: 14  HRRGIARLAAVQALYQI-----DIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEW 68
           +++ IAR+AAVQA+YQ      D +      ++S Y+      D     E++ + + +  
Sbjct: 7   NKKSIARIAAVQAIYQNILQNNDDMDDIMQNVLSFYQNNNSITDLP---ENLKISLSISH 63

Query: 69  FRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIIS 128
           F++++  V +    +D +I + LT     + + ++L ++LR  + EL+ C + P +V+I+
Sbjct: 64  FKMLVKSVFENIHKLDEIIDNHLTNDKDPAHMPILLRALLRVSICELLFCPTTPAKVVIN 123

Query: 129 EYVCIAHDFFYGDEPKFINAVLDKVSRK 156
           EY  IA+D     E  F+N+VLDK++++
Sbjct: 124 EYTDIANDMLNEHEIGFVNSVLDKIAKE 151


>gi|189184153|ref|YP_001937938.1| transcription antitermination protein NusB [Orientia tsutsugamushi
           str. Ikeda]
 gi|189180924|dbj|BAG40704.1| N utilization substance protein B [Orientia tsutsugamushi str.
           Ikeda]
          Length = 162

 Score = 75.9 bits (185), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 46/147 (31%), Positives = 75/147 (51%), Gaps = 6/147 (4%)

Query: 14  HRRGIARLAAVQALYQIDIIGCSTT------EIISEYETYRFCADTELDVESVYLHVDLE 67
           + + I R+A++Q +Y   I+    T       II+ Y+      D ELD       +   
Sbjct: 9   NTKTITRIASIQGVYSYQILDSEPTIDSIIDFIITYYKDKSSLEDLELDSAIPCFKLRTN 68

Query: 68  WFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVII 127
           +   +++  +D  + ID++ISS L + W    L +IL SILR    EL    S P +V+I
Sbjct: 69  YLTKLVNETIDNLETIDMIISSYLADNWQIKDLHLILLSILRVATCELKFFTSTPYKVVI 128

Query: 128 SEYVCIAHDFFYGDEPKFINAVLDKVS 154
           +E+  IA DF    E  F+N++L+K+S
Sbjct: 129 NEFTNIASDFVKDSEIGFVNSLLEKIS 155


>gi|153878112|ref|ZP_02004488.1| transcription antitermination protein NusB [Beggiatoa sp. PS]
 gi|152065424|gb|EDN65512.1| transcription antitermination protein NusB [Beggiatoa sp. PS]
          Length = 164

 Score = 75.5 bits (184), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 44/144 (30%), Positives = 77/144 (53%), Gaps = 3/144 (2%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLH-VDLEWFRVIIH 74
           R +AR   +QALYQ  + G +T  I S++      +  E + E   +   D+ +F+ ++H
Sbjct: 13  RHVARERVLQALYQWQLTGQNTQLIESQFLDESTLSKEEDESEEPDMQKADIPYFKQLLH 72

Query: 75  GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134
            + ++   +D L +  L  K   ++LD +  +ILR G  EL  C  +P +V+I+E V +A
Sbjct: 73  SIPEKTSDLDKLFAPFLDRK--ITQLDPVELAILRIGSYELTHCQDIPFKVVINEAVELA 130

Query: 135 HDFFYGDEPKFINAVLDKVSRKEE 158
             F      K+IN VLDK++  ++
Sbjct: 131 KQFGAEQSHKYINGVLDKLAHSQQ 154


>gi|331018230|gb|EGH98286.1| transcription antitermination protein NusB [Pseudomonas syringae
           pv. lachrymans str. M302278PT]
          Length = 165

 Score = 75.5 bits (184), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 56/169 (33%), Positives = 87/169 (51%), Gaps = 23/169 (13%)

Query: 2   TIQDNKKDLK-------LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTE 54
           T Q N +D K        S +R  AR  A QALYQ  + G +  EI +++          
Sbjct: 6   TDQFNPRDAKSPEIAKGKSAKRREARQMATQALYQRHMAGHALNEIEAQFR--------- 56

Query: 55  LDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLE 114
             V++ + +VD  +FR ++HGV   +  ID  ++SCL    +   LD I  +ILR    E
Sbjct: 57  --VDNDFSNVDGTYFRELLHGVAINQTEIDTALTSCL--DLTIEELDPIELAILRLSTFE 112

Query: 115 LIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVS---RKEEIK 160
           L++   VP  V+I+E + +A  +   D  KF+N VLDK++   R+ E+K
Sbjct: 113 LLKRIDVPYRVVINEGIELAKIYGSTDGHKFVNGVLDKLAPRLREVEVK 161


>gi|213969286|ref|ZP_03397424.1| transcription antitermination protein NusB [Pseudomonas syringae
           pv. tomato T1]
 gi|301381790|ref|ZP_07230208.1| transcription antitermination protein NusB [Pseudomonas syringae
           pv. tomato Max13]
 gi|302061010|ref|ZP_07252551.1| transcription antitermination protein NusB [Pseudomonas syringae
           pv. tomato K40]
 gi|302130538|ref|ZP_07256528.1| transcription antitermination protein NusB [Pseudomonas syringae
           pv. tomato NCPPB 1108]
 gi|213925964|gb|EEB59521.1| transcription antitermination protein NusB [Pseudomonas syringae
           pv. tomato T1]
 gi|330964918|gb|EGH65178.1| transcription antitermination protein NusB [Pseudomonas syringae
           pv. actinidiae str. M302091]
          Length = 165

 Score = 75.5 bits (184), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 52/162 (32%), Positives = 82/162 (50%), Gaps = 20/162 (12%)

Query: 2   TIQDNKKDLK-------LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTE 54
           T Q N +D K        S +R  AR  A QALYQ  + G +  EI +++          
Sbjct: 6   TDQFNPRDAKSPEIAKGKSAKRREARQMATQALYQRHMAGHALNEIEAQFR--------- 56

Query: 55  LDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLE 114
             V++ + +VD  +FR ++HGV   +  ID  ++ CL    +   LD I  +ILR    E
Sbjct: 57  --VDNDFSNVDGTYFRELLHGVATNQTEIDTALTPCL--DLTIEELDPIELAILRLSTFE 112

Query: 115 LIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRK 156
           L++   VP  V+I+E + +A  +   D  KF+N VLDK++ +
Sbjct: 113 LLKRIDVPYRVVINEGIELAKVYGSTDGHKFVNGVLDKLAPR 154


>gi|157825345|ref|YP_001493065.1| transcription antitermination protein NusB [Rickettsia akari str.
           Hartford]
 gi|166215710|sp|A8GMD2|NUSB_RICAH RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|157799303|gb|ABV74557.1| transcription antitermination protein NusB [Rickettsia akari str.
           Hartford]
          Length = 156

 Score = 75.5 bits (184), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 42/147 (28%), Positives = 83/147 (56%), Gaps = 2/147 (1%)

Query: 14  HRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLE--WFRV 71
           +++ IAR+AAVQA+YQ  +      + I +     +  D+ +   +  L + L    F++
Sbjct: 7   NKKSIARIAAVQAIYQNILQNNDDMDDIMQNVLSFYRNDSSITNLTGNLKISLSISHFKI 66

Query: 72  IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
           ++  V +    +D +I + LT     + + ++L ++LRAG+ EL+   + P +V+I+EY 
Sbjct: 67  LVKSVFENINKLDEIIDNHLTNDKDPAHMPILLRALLRAGIYELLFYPTTPAKVVINEYT 126

Query: 132 CIAHDFFYGDEPKFINAVLDKVSRKEE 158
            IA+D   G E  F+N+VLD +++++ 
Sbjct: 127 DIANDMLNGYEIGFVNSVLDTIAKEKN 153


>gi|148284859|ref|YP_001248949.1| transcription antitermination protein NusB [Orientia tsutsugamushi
           str. Boryong]
 gi|146740298|emb|CAM80679.1| N utilization substance protein B [Orientia tsutsugamushi str.
           Boryong]
          Length = 162

 Score = 75.5 bits (184), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 46/147 (31%), Positives = 75/147 (51%), Gaps = 6/147 (4%)

Query: 14  HRRGIARLAAVQALYQIDIIGCSTT------EIISEYETYRFCADTELDVESVYLHVDLE 67
           + + I R+A++Q +Y   I+    T       II+ Y+      D ELD       +   
Sbjct: 9   NTKTITRIASIQGVYSYQILDSEPTIDSIIDFIITYYKDKSSLEDLELDSAIPCFKLRTN 68

Query: 68  WFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVII 127
           +   +++  +D  + ID++ISS L + W    L +IL SILR    EL    S P +V+I
Sbjct: 69  YLTKLVNETIDNLETIDMIISSYLADNWQIKDLHLILLSILRVATCELKFFTSTPYKVVI 128

Query: 128 SEYVCIAHDFFYGDEPKFINAVLDKVS 154
           +E+  IA DF    E  F+N++L+K+S
Sbjct: 129 NEFTNIASDFVKESEIGFVNSLLEKIS 155


>gi|325276599|ref|ZP_08142341.1| transcription antitermination protein NusB [Pseudomonas sp. TJI-51]
 gi|324098278|gb|EGB96382.1| transcription antitermination protein NusB [Pseudomonas sp. TJI-51]
          Length = 166

 Score = 75.1 bits (183), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 53/151 (35%), Positives = 79/151 (52%), Gaps = 16/151 (10%)

Query: 13  SHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVI 72
           S +R  AR  A QALYQ  +   S  EI +++            V++ +  VD  +FR I
Sbjct: 25  SAKRREARKLATQALYQWHMAQHSLNEIEAQFR-----------VDNDFTDVDGAYFREI 73

Query: 73  IHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVC 132
           +HGV   K  ID  ++ C+T   +   LD +  ++LR    ELI+   VP  V+I+E V 
Sbjct: 74  LHGVPAVKDEIDKALAPCMT--IALDELDPVELAVLRLSTWELIKRVDVPYRVVINEGVE 131

Query: 133 IAHDFFYGDEPKFINAVLDKVS---RKEEIK 160
           +A  F   D  KF+N VLDK++   R+ E+K
Sbjct: 132 LAKVFGATDGHKFVNGVLDKLAPSLREAEVK 162


>gi|330969737|gb|EGH69803.1| transcription antitermination protein NusB [Pseudomonas syringae
           pv. aceris str. M302273PT]
          Length = 165

 Score = 75.1 bits (183), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 52/162 (32%), Positives = 81/162 (50%), Gaps = 20/162 (12%)

Query: 2   TIQDNKKDLK-------LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTE 54
           T Q N +D K        S +R  AR  A QALYQ  + G +  EI +++          
Sbjct: 6   TDQFNPRDAKSPEAAKGKSAKRREARQMATQALYQRHMAGHALNEIEAQFR--------- 56

Query: 55  LDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLE 114
             V++ + +VD  +FR ++HGV   +  ID  +  CL    +   LD I  +ILR    E
Sbjct: 57  --VDNDFSNVDGTYFRELLHGVATNQTEIDTALKPCLD--LTIEELDPIELAILRLSTFE 112

Query: 115 LIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRK 156
           L++   VP  V+I+E + +A  +   D  KF+N VLDK++ +
Sbjct: 113 LLKRIDVPYRVVINEGIELAKVYGSTDGHKFVNGVLDKLAPR 154


>gi|330959944|gb|EGH60204.1| transcription antitermination protein NusB [Pseudomonas syringae
           pv. maculicola str. ES4326]
          Length = 165

 Score = 75.1 bits (183), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 54/169 (31%), Positives = 86/169 (50%), Gaps = 23/169 (13%)

Query: 2   TIQDNKKDLK-------LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTE 54
           T Q N +D K        S +R  AR  A QALYQ  + G +  EI +++          
Sbjct: 6   TDQFNPRDAKSPEIAKGKSAKRREARQMATQALYQRHMAGHALNEIEAQFR--------- 56

Query: 55  LDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLE 114
             V++ + +VD  +FR ++HGV   +  ID  ++ CL    +   LD I  ++LR    E
Sbjct: 57  --VDNDFSNVDGTYFRELLHGVATNQAEIDAALTPCLD--LTIEELDPIELAVLRLSTFE 112

Query: 115 LIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVS---RKEEIK 160
           L++   VP  V+I+E + +A  +   D  KF+N VLDK++   R+ E+K
Sbjct: 113 LLKRIDVPYRVVINEGIELAKVYGSTDGHKFVNGVLDKLAPRLREVEVK 161


>gi|330899661|gb|EGH31080.1| transcription antitermination protein NusB [Pseudomonas syringae
           pv. japonica str. M301072PT]
 gi|330943563|gb|EGH45900.1| transcription antitermination protein NusB [Pseudomonas syringae
           pv. pisi str. 1704B]
 gi|330976725|gb|EGH76766.1| transcription antitermination protein NusB [Pseudomonas syringae
           pv. aptata str. DSM 50252]
          Length = 165

 Score = 75.1 bits (183), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 52/162 (32%), Positives = 81/162 (50%), Gaps = 20/162 (12%)

Query: 2   TIQDNKKDLK-------LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTE 54
           T Q N +D K        S +R  AR  A QALYQ  + G S  EI +++          
Sbjct: 6   TDQFNPRDAKSPEAAKGKSAKRREARQMATQALYQWHMAGHSLNEIEAQFR--------- 56

Query: 55  LDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLE 114
             V++ + +VD  +F  ++HGV   K  ID  +S CL    +   LD +  ++LR    E
Sbjct: 57  --VDNDFSNVDGTYFHELLHGVATNKTEIDTALSPCL--DLTIEELDPVELAVLRLSTFE 112

Query: 115 LIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRK 156
           L++   VP  V+I+E + +A  +   D  KF+N VLDK++ +
Sbjct: 113 LLKRIDVPYRVVINEGIELAKVYGSTDGHKFVNGVLDKLAPR 154


>gi|66047685|ref|YP_237526.1| transcription antitermination protein NusB [Pseudomonas syringae
           pv. syringae B728a]
 gi|75500475|sp|Q4ZMY4|NUSB_PSEU2 RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|63258392|gb|AAY39488.1| Antitermination protein NusB [Pseudomonas syringae pv. syringae
           B728a]
          Length = 165

 Score = 74.7 bits (182), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 52/162 (32%), Positives = 81/162 (50%), Gaps = 20/162 (12%)

Query: 2   TIQDNKKDLK-------LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTE 54
           T Q N +D K        S +R  AR  A QALYQ  + G +  EI +++          
Sbjct: 6   TDQFNPRDAKSPEIAKGKSAKRREARQMATQALYQRHMAGHALNEIEAQFR--------- 56

Query: 55  LDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLE 114
             V++ + +VD  +FR ++HGV   +  ID  +  CL    +   LD I  +ILR    E
Sbjct: 57  --VDNDFSNVDGTYFRELLHGVATNQTEIDTALKPCLD--LTIEELDPIELAILRLSTFE 112

Query: 115 LIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRK 156
           L++   VP  V+I+E + +A  +   D  KF+N VLDK++ +
Sbjct: 113 LLKRIDVPYRVVINEGIELAKVYGSTDGHKFVNGVLDKLAPR 154


>gi|157828080|ref|YP_001494322.1| transcription antitermination protein NusB [Rickettsia rickettsii
           str. 'Sheila Smith']
 gi|165932780|ref|YP_001649569.1| transcription antitermination protein NusB [Rickettsia rickettsii
           str. Iowa]
 gi|166215712|sp|A8GQY9|NUSB_RICRS RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|189035898|sp|B0BWD7|NUSB_RICRO RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|157800561|gb|ABV75814.1| transcription antitermination protein NusB [Rickettsia rickettsii
           str. 'Sheila Smith']
 gi|165907867|gb|ABY72163.1| N utilization substance protein B [Rickettsia rickettsii str. Iowa]
          Length = 156

 Score = 74.7 bits (182), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 42/148 (28%), Positives = 83/148 (56%), Gaps = 8/148 (5%)

Query: 14  HRRGIARLAAVQALYQI-----DIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEW 68
           +++ IAR+AAVQA+YQ      D +      ++S Y+      D     E++ + + +  
Sbjct: 7   NKKSIARIAAVQAIYQNILQNNDDMDDIMQNVLSFYQNNNSITDLP---ENLKISLSISH 63

Query: 69  FRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIIS 128
           F++++  V +    +D +I + LT     + + ++L ++LR  + EL+ C + P +V+I+
Sbjct: 64  FKMLVKLVFENIHKLDEIIDNHLTNDKDPAHMPILLRALLRVSICELLFCPTTPAKVVIN 123

Query: 129 EYVCIAHDFFYGDEPKFINAVLDKVSRK 156
           EY  IA+D     E  F+N+VLDK++++
Sbjct: 124 EYTDIANDMLNEHEIGFVNSVLDKIAKE 151


>gi|67459511|ref|YP_247135.1| transcription antitermination protein NusB [Rickettsia felis
           URRWXCal2]
 gi|75536082|sp|Q4UKG1|NUSB_RICFE RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|67005044|gb|AAY61970.1| N utilization substance protein B [Rickettsia felis URRWXCal2]
          Length = 156

 Score = 74.3 bits (181), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 40/147 (27%), Positives = 82/147 (55%), Gaps = 2/147 (1%)

Query: 14  HRRGIARLAAVQALYQIDIIGCSTTEIISE--YETYRFCADTELDVESVYLHVDLEWFRV 71
           +++ IAR+AAVQA+YQ  +      + I +     Y+    T    E++ + + +  F++
Sbjct: 7   NKKSIARIAAVQAIYQNILQNNDDMDDIMQNVLSFYQNNNSTTALPENLKISLSISHFKM 66

Query: 72  IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
           ++  V +    +D +I + LT     + + ++L ++LR  + EL+ C + P +V+I+EY 
Sbjct: 67  LVKSVFENINKLDEIIDNHLTNDKDPAHMPILLRALLRVSICELLFCPTTPAKVVINEYT 126

Query: 132 CIAHDFFYGDEPKFINAVLDKVSRKEE 158
            IA+D     E  F+N++LDK++++  
Sbjct: 127 DIANDMLNEHEIGFVNSILDKIAQENN 153


>gi|28867922|ref|NP_790541.1| N utilization substance protein B [Pseudomonas syringae pv. tomato
           str. DC3000]
 gi|32171596|sp|Q889Q5|NUSB_PSESM RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|28851158|gb|AAO54236.1| N utilization substance protein B [Pseudomonas syringae pv. tomato
           str. DC3000]
          Length = 165

 Score = 74.3 bits (181), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 55/169 (32%), Positives = 86/169 (50%), Gaps = 23/169 (13%)

Query: 2   TIQDNKKDLK-------LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTE 54
           T Q N +D K        S +R  AR  A QALYQ  + G +  EI +++          
Sbjct: 6   TDQFNPRDAKSPEIAKGKSAKRREARQMATQALYQRHMAGHALNEIEAQFR--------- 56

Query: 55  LDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLE 114
             V++ + +VD  +FR ++HGV   +  ID  ++ CL    +   LD I  +ILR    E
Sbjct: 57  --VDNDFSNVDGTYFRELLHGVAINQTEIDTALTPCL--DLTIEELDPIELAILRLSTFE 112

Query: 115 LIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVS---RKEEIK 160
           L++   VP  V+I+E + +A  +   D  KF+N VLDK++   R+ E+K
Sbjct: 113 LLKRIDVPYRVVINEGIELAKVYGSTDGHKFVNGVLDKLAPRLREVEVK 161


>gi|89099252|ref|ZP_01172130.1| transcription antitermination protein NusB [Bacillus sp. NRRL
           B-14911]
 gi|89086098|gb|EAR65221.1| transcription antitermination protein NusB [Bacillus sp. NRRL
           B-14911]
          Length = 130

 Score = 73.9 bits (180), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 49/139 (35%), Positives = 68/139 (48%), Gaps = 16/139 (11%)

Query: 15  RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74
           +R  AR  A+QAL+QID+     +E I            E D          E+  +++ 
Sbjct: 2   KRRTAREKALQALFQIDVSQADPSEAID-----HVLEGEEGD----------EYLTLVVT 46

Query: 75  GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134
           GV++ K+ ID LI   L EKW   RL  +  ++LR GV EL     VP  V+I E + IA
Sbjct: 47  GVLENKEEIDSLIKQYL-EKWKLERLATVDRNLLRQGVYELKYSKEVPANVVIDEAIEIA 105

Query: 135 HDFFYGDEPKFINAVLDKV 153
             F   +  +FIN VL KV
Sbjct: 106 KIFGDDNSSRFINGVLSKV 124


>gi|237797516|ref|ZP_04585977.1| transcription antitermination protein NusB [Pseudomonas syringae
           pv. oryzae str. 1_6]
 gi|331020366|gb|EGI00423.1| transcription antitermination protein NusB [Pseudomonas syringae
           pv. oryzae str. 1_6]
          Length = 165

 Score = 73.9 bits (180), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 54/169 (31%), Positives = 85/169 (50%), Gaps = 23/169 (13%)

Query: 2   TIQDNKKDLK-------LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTE 54
           T Q N +D K        S +R  AR  A QALYQ  + G +  EI +++          
Sbjct: 6   TDQFNPRDAKSPEAAKGKSAKRREARQMATQALYQWHMAGHALNEIEAQFR--------- 56

Query: 55  LDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLE 114
             V++ + +VD  +F  ++HGV   K  ID  +S CL    +   LD +  ++LR    E
Sbjct: 57  --VDNDFSNVDGTYFHELLHGVATNKTEIDTALSPCL--DLTIEELDPVELAVLRLSTFE 112

Query: 115 LIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVS---RKEEIK 160
           L++   VP  V+I+E + +A  +   D  KF+N VLDK++   R+ E+K
Sbjct: 113 LLKRIDVPYRVVINEGIELAKVYGSTDGHKFVNGVLDKLAPRLREVEVK 161


>gi|330877563|gb|EGH11712.1| transcription antitermination protein NusB [Pseudomonas syringae
           pv. morsprunorum str. M302280PT]
          Length = 165

 Score = 73.2 bits (178), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 51/162 (31%), Positives = 82/162 (50%), Gaps = 20/162 (12%)

Query: 2   TIQDNKKDLK-------LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTE 54
           T Q N +D K        S +R  AR  A QALYQ  + G + +EI +++          
Sbjct: 6   TDQFNPRDAKSPEIAKGKSAKRREARQMATQALYQRHMAGHALSEIEAQFR--------- 56

Query: 55  LDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLE 114
             V++ + +VD  +F  ++HGV   +  ID  ++ CL    +   LD I  +ILR    E
Sbjct: 57  --VDNDFSNVDGTYFHELLHGVATNQTEIDTALTPCL--DLTIEELDPIELAILRLSTFE 112

Query: 115 LIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRK 156
           L++   VP  V+I+E + +A  +   D  KF+N VLDK++ +
Sbjct: 113 LLKRIDVPYRVVINEGIELAKVYGSTDGHKFVNGVLDKLAPR 154


>gi|83648594|ref|YP_437029.1| transcription antitermination protein NusB [Hahella chejuensis KCTC
           2396]
 gi|119390775|sp|Q2S9S0|NUSB_HAHCH RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|83636637|gb|ABC32604.1| transcription antitermination factor NusB [Hahella chejuensis KCTC
           2396]
          Length = 149

 Score = 72.8 bits (177), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 47/144 (32%), Positives = 74/144 (51%), Gaps = 13/144 (9%)

Query: 11  KLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFR 70
           K   +R  AR  A+QALYQ  + G S ++I +E     F  D +L        VD + F+
Sbjct: 3   KAMEKRRAARKLALQALYQWRVAGASISQIEAE-----FAVDNDLQ------QVDRDLFK 51

Query: 71  VIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEY 130
            +++GV      +D L+   +  K   + +D +  S++R G  EL     VP  V+I+E 
Sbjct: 52  AVLYGVPSSVSELDALLQPFVDRK--LTDVDPVELSLIRMGAFELRSRIEVPYRVVINEA 109

Query: 131 VCIAHDFFYGDEPKFINAVLDKVS 154
           V +A  F   D  KF+N+VLDK++
Sbjct: 110 VELAKQFGGTDGHKFVNSVLDKLA 133


>gi|26987256|ref|NP_742681.1| transcription antitermination protein NusB [Pseudomonas putida
           KT2440]
 gi|148545803|ref|YP_001265905.1| transcription antitermination protein NusB [Pseudomonas putida F1]
 gi|167031580|ref|YP_001666811.1| transcription antitermination protein NusB [Pseudomonas putida
           GB-1]
 gi|32171603|sp|Q88QH5|NUSB_PSEPK RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|166215708|sp|A5VXW1|NUSB_PSEP1 RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|189035897|sp|B0KL71|NUSB_PSEPG RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|24981898|gb|AAN66145.1|AE016242_13 N utilization substance protein B [Pseudomonas putida KT2440]
 gi|148509861|gb|ABQ76721.1| NusB antitermination factor [Pseudomonas putida F1]
 gi|166858068|gb|ABY96475.1| NusB antitermination factor [Pseudomonas putida GB-1]
 gi|313496885|gb|ADR58251.1| NusB [Pseudomonas putida BIRD-1]
          Length = 166

 Score = 72.8 bits (177), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 53/151 (35%), Positives = 78/151 (51%), Gaps = 16/151 (10%)

Query: 13  SHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVI 72
           S +R  AR  A QALYQ  +   S  EI +++            V++ +  VD  +FR I
Sbjct: 25  SAKRREARKLATQALYQWHMAQHSLNEIEAQFR-----------VDNDFTDVDGAYFREI 73

Query: 73  IHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVC 132
           +HGV   K  ID  +  C+T   +   LD +  ++LR    ELI+   VP  V+I+E V 
Sbjct: 74  LHGVPAIKGEIDKALVPCMT--IALEELDPVELAVLRLSTWELIKRVDVPYRVVINEGVE 131

Query: 133 IAHDFFYGDEPKFINAVLDKVS---RKEEIK 160
           +A  F   D  KF+N VLDK++   R+ E+K
Sbjct: 132 LAKVFGATDGHKFVNGVLDKLAPALREAEVK 162


>gi|90023094|ref|YP_528921.1| transcription antitermination protein NusB [Saccharophagus
           degradans 2-40]
 gi|119390816|sp|Q21F20|NUSB_SACD2 RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|89952694|gb|ABD82709.1| N utilization substance protein B [Saccharophagus degradans 2-40]
          Length = 150

 Score = 72.8 bits (177), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 54/153 (35%), Positives = 80/153 (52%), Gaps = 17/153 (11%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           RG AR  A+QALYQ ++ G +   I +E+ T     D ++        VD+E+F  I+HG
Sbjct: 8   RGRARHFAMQALYQWEMSGNALHVIEAEFHT-----DNDMS------KVDVEYFHEILHG 56

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
           V   K  +D      LT       +D +  ++LR    E  +   VP +V+I+E V +A 
Sbjct: 57  VAAIKSTLDETFKPFLT-GLRLDEIDPVSLAVLRQACYEFEKRVDVPYKVVINEAVNLAK 115

Query: 136 DFFYGDEPKFINAVLDKVS---RKEEIK--RSG 163
            F   D  KFIN VLDKV+   RK+E++  R+G
Sbjct: 116 KFGAADSHKFINGVLDKVALRVRKDEVEAMRTG 148


>gi|119945180|ref|YP_942860.1| NusB antitermination factor [Psychromonas ingrahamii 37]
 gi|229620369|sp|A1SUU6|NUSB_PSYIN RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|119863784|gb|ABM03261.1| NusB antitermination factor [Psychromonas ingrahamii 37]
          Length = 145

 Score = 72.4 bits (176), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 46/146 (31%), Positives = 79/146 (54%), Gaps = 14/146 (9%)

Query: 10  LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF 69
           +K + RR  AR +AVQA+YQ  I   S  +II ++ T +  + T           D+ +F
Sbjct: 3   MKPAERRR-ARQSAVQAIYQWQITKLSAGQIIEQFSTDQDLSKT-----------DVPYF 50

Query: 70  RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISE 129
           + ++ GV+ R   +D  +S  L+ K     +DM+  ++LR  + EL +   +P +V+++E
Sbjct: 51  KELLTGVIHRVDFLDEKLSPYLSRK--IEDVDMVDKAVLRLAMFELTQRTDIPHKVVLNE 108

Query: 130 YVCIAHDFFYGDEPKFINAVLDKVSR 155
            + +A DF   +  KF+N VLDK  R
Sbjct: 109 AIELAKDFATDESYKFVNGVLDKALR 134


>gi|77461236|ref|YP_350743.1| transcription antitermination protein NusB [Pseudomonas fluorescens
           Pf0-1]
 gi|119390800|sp|Q3K652|NUSB_PSEPF RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|77385239|gb|ABA76752.1| N utilization substance protein B [Pseudomonas fluorescens Pf0-1]
          Length = 166

 Score = 72.4 bits (176), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 51/151 (33%), Positives = 78/151 (51%), Gaps = 16/151 (10%)

Query: 13  SHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVI 72
           S +R  AR  A QALYQ  +   S  EI +++            V++ +  VD  +FR I
Sbjct: 25  SAKRREARQLATQALYQWHMARQSLNEIEAQFR-----------VDNDFTDVDGAYFREI 73

Query: 73  IHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVC 132
           +HGV   K  ID  ++ CL    +   LD +  ++LR    EL++   VP  V+I+E + 
Sbjct: 74  LHGVPQFKTEIDNALTPCLD--LAIEELDPVELAVLRLSTWELLKRVDVPYRVVINEGIE 131

Query: 133 IAHDFFYGDEPKFINAVLDKVS---RKEEIK 160
           +A  F   D  KF+N VLDK++   R+ E+K
Sbjct: 132 LAKVFGSTDGHKFVNGVLDKLAPRLREAEVK 162


>gi|70732819|ref|YP_262586.1| transcription antitermination protein NusB [Pseudomonas fluorescens
           Pf-5]
 gi|119390798|sp|Q4K597|NUSB_PSEF5 RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|68347118|gb|AAY94724.1| N utilization substance protein B [Pseudomonas fluorescens Pf-5]
          Length = 166

 Score = 72.4 bits (176), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 50/151 (33%), Positives = 77/151 (50%), Gaps = 16/151 (10%)

Query: 13  SHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVI 72
           S +R  AR  A QALYQ  +   S  EI +++            V++ +  +D  +FR I
Sbjct: 25  SAKRREARQLATQALYQWHMAKHSLNEIEAQFR-----------VDNDFTDIDGAYFREI 73

Query: 73  IHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVC 132
           +HGV   K  ID  +  CL    +   LD +  ++LR    EL++   VP  V+I+E + 
Sbjct: 74  LHGVPANKNEIDTALVPCLD--LAIDELDPVELAVLRLSTWELLKRVDVPYRVVINEGIE 131

Query: 133 IAHDFFYGDEPKFINAVLDKVS---RKEEIK 160
           +A  F   D  KF+N VLDK++   R+ E+K
Sbjct: 132 LAKVFGSTDGHKFVNGVLDKLAPRLREAEVK 162


>gi|20141624|sp|Q9ZE01|NUSB_RICPR RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|292571756|gb|ADE29671.1| N utilization substance protein B [Rickettsia prowazekii Rp22]
          Length = 155

 Score = 72.4 bits (176), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 41/154 (26%), Positives = 85/154 (55%), Gaps = 17/154 (11%)

Query: 14  HRRGIARLAAVQALYQIDIIGCSTTEIISEYETYR--------FCADTELDVESVY-LHV 64
           +++ IAR+AAVQALYQ +I+        + Y+ Y         + ++  +D+   + + +
Sbjct: 7   NKKSIARIAAVQALYQ-NILQ-------NNYDMYDIMQNILACYHSNNSIDLPKNFKISL 58

Query: 65  DLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVE 124
            +  F++++  V +    +D +I + LT       + ++L ++LR  + EL+ C + P +
Sbjct: 59  SISHFKMLVKSVFENINKLDEIIDNHLTNAKDSVHMPILLRALLRVSICELLFCSTTPAK 118

Query: 125 VIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEE 158
           V+I+EY  IA+D     E  F+N++LDK++++  
Sbjct: 119 VVINEYTDIANDLLNEHEIGFVNSILDKIAQENN 152


>gi|254427255|ref|ZP_05040962.1| transcription antitermination factor NusB [Alcanivorax sp. DG881]
 gi|196193424|gb|EDX88383.1| transcription antitermination factor NusB [Alcanivorax sp. DG881]
          Length = 149

 Score = 72.0 bits (175), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 45/141 (31%), Positives = 76/141 (53%), Gaps = 13/141 (9%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           R  AR   +QALYQ  + G + ++I ++     F A+ +      +  VD E+F  ++HG
Sbjct: 9   RRKARRFTLQALYQWQLAGAAVSDIEAQ-----FLANQD------FAKVDREYFHDLLHG 57

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
           V+ + + +D L++  L  +     L  +  +ILR G  EL E   VP  V+I+E + +A 
Sbjct: 58  VLGQVKTLDELLTPYLDRR--VEELSQVEKAILRLGAFELKERQDVPYRVVINEGIELAK 115

Query: 136 DFFYGDEPKFINAVLDKVSRK 156
            F   D  K++N VLDK++R+
Sbjct: 116 VFGAEDSFKYVNGVLDKLARQ 136


>gi|330812010|ref|YP_004356472.1| transcription antitermination protein NusB [Pseudomonas
           brassicacearum subsp. brassicacearum NFM421]
 gi|327380118|gb|AEA71468.1| transcription antitermination protein NusB [Pseudomonas
           brassicacearum subsp. brassicacearum NFM421]
          Length = 166

 Score = 72.0 bits (175), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 51/151 (33%), Positives = 78/151 (51%), Gaps = 16/151 (10%)

Query: 13  SHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVI 72
           S +R  AR  A QALYQ  +   S  EI +++            V++ +  VD  +FR I
Sbjct: 25  SVKRREARQLATQALYQWHMAKQSLNEIEAQFR-----------VDNDFSDVDGAYFREI 73

Query: 73  IHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVC 132
           +HGV   K  ID  ++ CL    +   LD +  ++LR    EL++   VP  V+I+E + 
Sbjct: 74  LHGVPQFKTEIDTALTPCLD--LTIEELDPVELAVLRLSTWELLKRVDVPYRVVINEGIE 131

Query: 133 IAHDFFYGDEPKFINAVLDKVS---RKEEIK 160
           +A  F   D  KF+N VLDK++   R+ E+K
Sbjct: 132 LAKVFGSTDGHKFVNGVLDKLAPRLREAEVK 162


>gi|15604037|ref|NP_220552.1| transcription antitermination protein NusB [Rickettsia prowazekii
           str. Madrid E]
 gi|3860728|emb|CAA14629.1| N UTILIZATION SUBSTANCE PROTEIN B (nusB) [Rickettsia prowazekii]
          Length = 174

 Score = 72.0 bits (175), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 41/154 (26%), Positives = 85/154 (55%), Gaps = 17/154 (11%)

Query: 14  HRRGIARLAAVQALYQIDIIGCSTTEIISEYETYR--------FCADTELDVESVY-LHV 64
           +++ IAR+AAVQALYQ +I+        + Y+ Y         + ++  +D+   + + +
Sbjct: 26  NKKSIARIAAVQALYQ-NILQ-------NNYDMYDIMQNILACYHSNNSIDLPKNFKISL 77

Query: 65  DLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVE 124
            +  F++++  V +    +D +I + LT       + ++L ++LR  + EL+ C + P +
Sbjct: 78  SISHFKMLVKSVFENINKLDEIIDNHLTNAKDSVHMPILLRALLRVSICELLFCSTTPAK 137

Query: 125 VIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEE 158
           V+I+EY  IA+D     E  F+N++LDK++++  
Sbjct: 138 VVINEYTDIANDLLNEHEIGFVNSILDKIAQENN 171


>gi|312963299|ref|ZP_07777782.1| N utilization substance protein B [Pseudomonas fluorescens WH6]
 gi|311282379|gb|EFQ60977.1| N utilization substance protein B [Pseudomonas fluorescens WH6]
          Length = 166

 Score = 72.0 bits (175), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 48/151 (31%), Positives = 76/151 (50%), Gaps = 16/151 (10%)

Query: 13  SHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVI 72
           S +R  AR  A QALYQ  + G S  EI +++            V++ +   D  +F  I
Sbjct: 25  SEKRRAARQLATQALYQRHMAGTSLNEIEAQFR-----------VDNDFTFADQSYFHDI 73

Query: 73  IHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVC 132
           +HGV      ID  ++ CL    +   LD +  ++LR    EL++   VP  V+I+E + 
Sbjct: 74  LHGVPANLTEIDAALTPCL--DLTLEELDPVELAVLRLSTWELLKRVDVPYRVVINEGIE 131

Query: 133 IAHDFFYGDEPKFINAVLDKVS---RKEEIK 160
           +A  +   D  KF+N VLDK++   R+ E+K
Sbjct: 132 LAKVYGSTDGHKFVNGVLDKLAPRLREAEVK 162


>gi|121997687|ref|YP_001002474.1| NusB antitermination factor [Halorhodospira halophila SL1]
 gi|166215692|sp|A1WVG0|NUSB_HALHL RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|121589092|gb|ABM61672.1| NusB antitermination factor [Halorhodospira halophila SL1]
          Length = 155

 Score = 72.0 bits (175), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 47/140 (33%), Positives = 68/140 (48%), Gaps = 14/140 (10%)

Query: 13  SHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVI 72
             RR  AR   VQALYQ  + G S  +I  ++            + +    +D+ +FR +
Sbjct: 7   GKRRSRARSKLVQALYQYAVTGASAEDIERQF------------LAAGLGDIDVAYFREL 54

Query: 73  IHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVC 132
           I+GV DR   +D  +S+ L       +LD +  SILR G  EL E   VP  V+I E V 
Sbjct: 55  IYGVTDRAAELDEQLSALLDR--PLVQLDPVERSILRLGAFELSERLEVPYRVVIDESVE 112

Query: 133 IAHDFFYGDEPKFINAVLDK 152
           +A  F      ++IN VLD+
Sbjct: 113 LARRFGADQSHRYINGVLDR 132


>gi|237809261|ref|YP_002893701.1| NusB antitermination factor [Tolumonas auensis DSM 9187]
 gi|259514913|sp|C4LAE0|NUSB_TOLAT RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|237501522|gb|ACQ94115.1| NusB antitermination factor [Tolumonas auensis DSM 9187]
          Length = 138

 Score = 70.9 bits (172), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 46/152 (30%), Positives = 79/152 (51%), Gaps = 14/152 (9%)

Query: 10  LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF 69
           +K + RR  AR  A+QA+YQ  +   +  +I+ +++           +E     VDL +F
Sbjct: 1   MKPAERRK-ARHLALQAIYQWQLAKDNVADIVEQFK-----------LEQPTKGVDLPYF 48

Query: 70  RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISE 129
            +++ GV++   ++D   S  L+ K     LD I   +LR    EL  C  VP +V+I+E
Sbjct: 49  ELLLTGVVNNVTNLDATFSPFLSRK--LDDLDQIDKGVLRLACYELTYCKDVPYKVVINE 106

Query: 130 YVCIAHDFFYGDEPKFINAVLDKVSRKEEIKR 161
            + +A  F   D  KF+N VLDKV ++  +++
Sbjct: 107 AIELAKAFATDDSHKFVNGVLDKVVKQMGLRQ 138


>gi|239948522|ref|ZP_04700275.1| transcription antitermination factor NusB [Rickettsia endosymbiont
           of Ixodes scapularis]
 gi|239922798|gb|EER22822.1| transcription antitermination factor NusB [Rickettsia endosymbiont
           of Ixodes scapularis]
          Length = 156

 Score = 70.9 bits (172), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 45/148 (30%), Positives = 85/148 (57%), Gaps = 8/148 (5%)

Query: 14  HRRGIARLAAVQALYQI-----DIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEW 68
           +++ IAR+AAVQA+YQ      D +      I+S Y+      D     E++ + + +  
Sbjct: 7   NKKSIARIAAVQAIYQNILQNNDDMDDIMQNILSFYQNNNSITDLP---ENLKISLSISH 63

Query: 69  FRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIIS 128
           F++++  V +    +D +I + LT     + + ++L ++LRAG+ EL+ C + P +V+I+
Sbjct: 64  FKMLVKSVFENINKLDEIIDNHLTNNKDPAHMLILLRALLRAGICELLFCPTTPAKVVIN 123

Query: 129 EYVCIAHDFFYGDEPKFINAVLDKVSRK 156
           EY  IA+D     E  F+N+VLDK++++
Sbjct: 124 EYTDIANDMLNEHEIGFVNSVLDKIAKE 151


>gi|51473361|ref|YP_067118.1| transcription antitermination protein NusB [Rickettsia typhi str.
           Wilmington]
 gi|51459673|gb|AAU03636.1| transcription termination protein NusB (N utilization substance
           protein B) [Rickettsia typhi str. Wilmington]
          Length = 173

 Score = 70.9 bits (172), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 41/153 (26%), Positives = 83/153 (54%), Gaps = 16/153 (10%)

Query: 14  HRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCAD-------TELDVESVY-LHVD 65
           +++ IAR+AAVQALYQ +I+        + Y+ Y    +         +D+   + + + 
Sbjct: 26  NKKSIARIAAVQALYQ-NILQ-------NNYDMYDIMQNILACYHSNSIDLPKNFKISLS 77

Query: 66  LEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEV 125
           +  F++++  V +    +D +I + LT       + ++L ++LR  + EL+ C + P +V
Sbjct: 78  ISHFKMLVKSVFENINKLDEIIDNHLTNDKDPVHMPILLRALLRVSICELLFCSTTPAKV 137

Query: 126 IISEYVCIAHDFFYGDEPKFINAVLDKVSRKEE 158
           +I+EY  IA+D     E  F+N++LDK++++  
Sbjct: 138 VINEYTDIANDLLNEHEIGFVNSILDKIAQENN 170


>gi|119390814|sp|Q68XK6|NUSB_RICTY RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
          Length = 154

 Score = 70.9 bits (172), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 41/153 (26%), Positives = 83/153 (54%), Gaps = 16/153 (10%)

Query: 14  HRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCAD-------TELDVESVY-LHVD 65
           +++ IAR+AAVQALYQ +I+        + Y+ Y    +         +D+   + + + 
Sbjct: 7   NKKSIARIAAVQALYQ-NILQ-------NNYDMYDIMQNILACYHSNSIDLPKNFKISLS 58

Query: 66  LEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEV 125
           +  F++++  V +    +D +I + LT       + ++L ++LR  + EL+ C + P +V
Sbjct: 59  ISHFKMLVKSVFENINKLDEIIDNHLTNDKDPVHMPILLRALLRVSICELLFCSTTPAKV 118

Query: 126 IISEYVCIAHDFFYGDEPKFINAVLDKVSRKEE 158
           +I+EY  IA+D     E  F+N++LDK++++  
Sbjct: 119 VINEYTDIANDLLNEHEIGFVNSILDKIAQENN 151


>gi|104779852|ref|YP_606350.1| transcription antitermination protein NusB [Pseudomonas entomophila
           L48]
 gi|123079269|sp|Q1IFL9|NUSB_PSEE4 RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|95108839|emb|CAK13535.1| transcription termination, L factor (N utilization substance
           protein B) [Pseudomonas entomophila L48]
          Length = 166

 Score = 70.9 bits (172), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 48/144 (33%), Positives = 71/144 (49%), Gaps = 13/144 (9%)

Query: 13  SHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVI 72
           S +R  AR  A QALYQ  +   S  E+ +++            V++ +  VD  +FR I
Sbjct: 25  SAKRREARKLATQALYQWHMAKHSLNEVEAQFR-----------VDNDFSDVDGAYFREI 73

Query: 73  IHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVC 132
           +HGV  +K  ID  +  CL        LD +  S+LR    E +    VP  V+I+E V 
Sbjct: 74  LHGVPAKKVEIDEALKPCLDT--PLEELDPVELSVLRLSAWEFMMRADVPYRVVINEGVE 131

Query: 133 IAHDFFYGDEPKFINAVLDKVSRK 156
           +A  F   D  KF+N VLDK++ +
Sbjct: 132 LAKVFGATDGHKFVNGVLDKLAPR 155


>gi|288553331|ref|YP_003425266.1| transcription antitermination protein NusB [Bacillus pseudofirmus
           OF4]
 gi|288544491|gb|ADC48374.1| transcription antitermination protein NusB [Bacillus pseudofirmus
           OF4]
          Length = 135

 Score = 70.9 bits (172), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 46/139 (33%), Positives = 72/139 (51%), Gaps = 19/139 (13%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDL--EWFRVII 73
           R +ARL A QALYQ+D+ G       SE E+          +ESV    +   E+F  ++
Sbjct: 3   RRLARLRAAQALYQMDLTG-------SEMESA---------IESVLEDNEKQSEFFTQLV 46

Query: 74  HGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCI 133
            G  + K  ID  IS+ L E W+ SR+  +  +I+R  + E++E   +PV V  +E + +
Sbjct: 47  QGTTELKTKIDETISANL-EGWTISRMGHVDRAIIRMAMYEMLEVEDIPVNVTFNEAIEL 105

Query: 134 AHDFFYGDEPKFINAVLDK 152
           A  F   +  +F+N VL K
Sbjct: 106 AKAFGGEEAGRFVNGVLSK 124


>gi|192359459|ref|YP_001983152.1| transcription antitermination protein NusB [Cellvibrio japonicus
           Ueda107]
 gi|190685624|gb|ACE83302.1| transcription antitermination factor NusB [Cellvibrio japonicus
           Ueda107]
          Length = 168

 Score = 70.5 bits (171), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 49/154 (31%), Positives = 76/154 (49%), Gaps = 12/154 (7%)

Query: 1   MTIQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESV 60
           MT         ++  R +AR  A+QALYQ  + G S   I +E+ T     D ++     
Sbjct: 12  MTSSPGSDKSHIAATRRMARHYAMQALYQWHMAGSSLNAIEAEFRT-----DNDMS---- 62

Query: 61  YLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHS 120
              VD+++F  ++HGV ++   ++      L ++ S   LD I  ++LR    EL     
Sbjct: 63  --KVDVDYFHELLHGVPEQLSGLEEQFQPFLVDR-SLEELDAITRALLRMATYELKNRID 119

Query: 121 VPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVS 154
           VP +V+I+E V +A  F   D  KFIN VLDK +
Sbjct: 120 VPYKVVINEAVSLAKKFGAEDSHKFINGVLDKTA 153


>gi|170719757|ref|YP_001747445.1| transcription antitermination protein NusB [Pseudomonas putida
           W619]
 gi|229620367|sp|B1J3F6|NUSB_PSEPW RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|169757760|gb|ACA71076.1| NusB antitermination factor [Pseudomonas putida W619]
          Length = 166

 Score = 70.1 bits (170), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 51/151 (33%), Positives = 76/151 (50%), Gaps = 16/151 (10%)

Query: 13  SHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVI 72
           S +R  AR  A QALYQ  +   S  EI +++            V++ +  VD  +FR I
Sbjct: 25  SAKRREARKLATQALYQWHMAQHSLNEIEAQFR-----------VDNDFTDVDGAYFREI 73

Query: 73  IHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVC 132
           +HGV   K  ID  +  C+    +   LD +  ++LR    E I+   VP  V+I+E V 
Sbjct: 74  LHGVPAIKSEIDSALKPCMD--IALEELDPVELAVLRLSTWEFIKRVDVPYRVVINEGVE 131

Query: 133 IAHDFFYGDEPKFINAVLDKVS---RKEEIK 160
           +A  F   D  KF+N VLDK++   R+ E+K
Sbjct: 132 LAKVFGATDGHKFVNGVLDKLAPSLREAEVK 162


>gi|110835031|ref|YP_693890.1| transcriptional terminator nusB [Alcanivorax borkumensis SK2]
 gi|119372273|sp|Q0VMI0|NUSB_ALCBS RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|110648142|emb|CAL17618.1| transcriptional terminator nusB [Alcanivorax borkumensis SK2]
          Length = 150

 Score = 69.7 bits (169), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 44/141 (31%), Positives = 75/141 (53%), Gaps = 13/141 (9%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           R  AR   +QALYQ  + G + ++I ++     F A+ +      +  VD E+F  ++HG
Sbjct: 10  RRKARRFTLQALYQWQLAGAAVSDIEAQ-----FLANQD------FAKVDREYFHDLLHG 58

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
           V+ + + +D  ++  L  +     L  +  +ILR G  EL E   VP  V+I+E + +A 
Sbjct: 59  VLGQVKTLDEQLTPYLDRR--VEELSQVEKAILRLGAFELKERQDVPYRVVINEGIELAK 116

Query: 136 DFFYGDEPKFINAVLDKVSRK 156
            F   D  K++N VLDK++R+
Sbjct: 117 VFGAEDSFKYVNGVLDKLARQ 137


>gi|229592845|ref|YP_002874964.1| transcription antitermination protein NusB [Pseudomonas fluorescens
           SBW25]
 gi|259514879|sp|C3K2R8|NUSB_PSEFS RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|229364711|emb|CAY52674.1| putative N utilisation-related protein [Pseudomonas fluorescens
           SBW25]
          Length = 166

 Score = 69.7 bits (169), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 48/151 (31%), Positives = 75/151 (49%), Gaps = 16/151 (10%)

Query: 13  SHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVI 72
           + +R  AR  A QALYQ  I G S  EI +++            V++ +   DL +F  I
Sbjct: 25  NEKRRAARQLATQALYQRQIAGASLNEIEAQFR-----------VDNDFTFADLPYFHDI 73

Query: 73  IHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVC 132
           +HGV      ID  ++ CL    +   LD +   ++R    EL+    VP  V+I+E + 
Sbjct: 74  LHGVHAHLTEIDAALAPCLD--LTIDELDPVELCVMRLSAWELLYRVDVPYRVVINEGIE 131

Query: 133 IAHDFFYGDEPKFINAVLDKVS---RKEEIK 160
           +A  +   D  KF+N VLDK++   R+ E+K
Sbjct: 132 LAKVYGSTDGHKFVNGVLDKLAPRLREAEVK 162


>gi|149909343|ref|ZP_01897999.1| transcription antitermination protein NusB [Moritella sp. PE36]
 gi|149807660|gb|EDM67608.1| transcription antitermination protein NusB [Moritella sp. PE36]
          Length = 140

 Score = 69.7 bits (169), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 46/145 (31%), Positives = 76/145 (52%), Gaps = 13/145 (8%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           R  AR  A QA+YQ  +    T E ++  E ++F  D +      +   D  +FR ++ G
Sbjct: 6   RSKARQFATQAIYQWQM----TQETVANIE-HQFVTDQD------FSGTDATYFRELVLG 54

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
           V      +D L+S  L+     + LD++  +ILR    EL++   VP +V+I+E + +A 
Sbjct: 55  VSLNSAELDELMSPFLSR--PLNDLDLVEKAILRLSTFELLKRQDVPYKVVINESIELAK 112

Query: 136 DFFYGDEPKFINAVLDKVSRKEEIK 160
           DF   D  KF+N VLDK+  K +++
Sbjct: 113 DFGAEDSHKFVNGVLDKIVSKLQLR 137


>gi|329898127|ref|ZP_08272329.1| Transcription termination protein NusB [gamma proteobacterium
           IMCC3088]
 gi|328920907|gb|EGG28339.1| Transcription termination protein NusB [gamma proteobacterium
           IMCC3088]
          Length = 147

 Score = 69.3 bits (168), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 50/144 (34%), Positives = 75/144 (52%), Gaps = 13/144 (9%)

Query: 12  LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71
           +S  R  AR   VQALY+  +   S+T+I +E+            ++  + HVDLE+F+ 
Sbjct: 8   ISAERHKARHYTVQALYRWHMNEQSSTDIEAEFR-----------IDYDFSHVDLEYFQA 56

Query: 72  IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
           ++HGV+     ID  +   L        LD +  +ILR G+ EL E   VP +V+I+E V
Sbjct: 57  LLHGVVKTHASIDAYLEPLLDR--KLDDLDAVELAILRMGLFELKERLDVPFKVVINEAV 114

Query: 132 CIAHDFFYGDEPKFINAVLDKVSR 155
            +   F   D  K+IN VLDK +R
Sbjct: 115 SLTRKFGATDGHKYINGVLDKAAR 138


>gi|323144126|ref|ZP_08078765.1| transcription antitermination factor NusB [Succinatimonas hippei
           YIT 12066]
 gi|322416103|gb|EFY06798.1| transcription antitermination factor NusB [Succinatimonas hippei
           YIT 12066]
          Length = 143

 Score = 69.3 bits (168), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 47/140 (33%), Positives = 69/140 (49%), Gaps = 13/140 (9%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           R  AR  A+QA+YQ  + G S  EI       +F  D  +         DL++   +I G
Sbjct: 13  RHKARHFAMQAIYQWQMTGQSAGEI-----ERQFLEDQPIQ------GADLDYMHDLISG 61

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
           V+   +HID +    L+       LD +  +ILR G  EL+    +P  V+I+E + +A 
Sbjct: 62  VVANFEHIDEVYEPFLSR--PLKDLDQVDKAILRLGTFELLYRQEIPFRVVINESIMLAK 119

Query: 136 DFFYGDEPKFINAVLDKVSR 155
           +F   D  KF+N VLDKV R
Sbjct: 120 EFAEQDSHKFVNGVLDKVVR 139


>gi|49080752|gb|AAT50054.1| PA4052 [synthetic construct]
          Length = 160

 Score = 68.9 bits (167), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 48/146 (32%), Positives = 72/146 (49%), Gaps = 14/146 (9%)

Query: 11  KLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFR 70
           K + RR  AR  AVQALY   I G    EI +++ T           ++ +  VD  +F 
Sbjct: 17  KTAARR-KARSLAVQALYSWQIAGQPLHEIEAQFRT-----------DNDFSEVDGAYFH 64

Query: 71  VIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEY 130
            I+HGV  +K  +D     CL      + +D +  +ILR    EL     VP +V+I+E 
Sbjct: 65  EILHGVPRQKSELDSTFEPCLDR--PLAEIDPVELAILRLSTYELRNRIDVPYKVVINEG 122

Query: 131 VCIAHDFFYGDEPKFINAVLDKVSRK 156
           + +A  F   D  KF+N VLDK++ +
Sbjct: 123 IELAKTFGATDGHKFVNGVLDKLAPR 148


>gi|41407196|ref|NP_960032.1| transcription antitermination protein NusB [Mycobacterium avium
           subsp. paratuberculosis K-10]
 gi|118463415|ref|YP_882592.1| transcription antitermination protein NusB [Mycobacterium avium
           104]
 gi|254775857|ref|ZP_05217373.1| transcription antitermination protein NusB [Mycobacterium avium
           subsp. avium ATCC 25291]
 gi|81571413|sp|Q741J2|NUSB_MYCPA RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|166215696|sp|A0QI54|NUSB_MYCA1 RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|41395547|gb|AAS03415.1| NusB [Mycobacterium avium subsp. paratuberculosis K-10]
 gi|118164702|gb|ABK65599.1| transcription antitermination factor NusB [Mycobacterium avium 104]
          Length = 156

 Score = 68.9 bits (167), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 48/146 (32%), Positives = 70/146 (47%), Gaps = 12/146 (8%)

Query: 8   KDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLE 67
           K L+  H+   AR  AV  L++ +  G S  E++   +     ADT  +V  +       
Sbjct: 3   KPLRGRHQ---ARKRAVDLLFEAEARGLSPAEVV---DVRTGLADTNPEVAPLQ-----P 51

Query: 68  WFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVII 127
           +   +  GV D   HID LISS L + W+  RL  +  +ILR  V EL+    VP  V +
Sbjct: 52  YTAAVARGVGDHAAHIDDLISSHL-QGWTLDRLPAVDRAILRVAVWELLYADDVPEPVAV 110

Query: 128 SEYVCIAHDFFYGDEPKFINAVLDKV 153
            E V +A +    D P F+N VL +V
Sbjct: 111 DEAVQLAKELSTDDSPGFVNGVLGQV 136


>gi|323140958|ref|ZP_08075870.1| transcription antitermination factor NusB [Phascolarctobacterium
           sp. YIT 12067]
 gi|322414561|gb|EFY05368.1| transcription antitermination factor NusB [Phascolarctobacterium
           sp. YIT 12067]
          Length = 154

 Score = 68.9 bits (167), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 50/154 (32%), Positives = 80/154 (51%), Gaps = 15/154 (9%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIIS----EYETYRFCA--------DTELDVESVYLH 63
           R +AR  A+QAL+QID  G    + +     E+E     A          EL   S   +
Sbjct: 3   RRLAREVALQALFQIDFTGNEVEQAVDAALDEHEELHPEAAVDKALDQHKELGAASARNY 62

Query: 64  VDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELI-ECHSVP 122
           V  ++  V+++GV++ K+ ID  ++SC T+ W+  R+     +ILR  V E+  E  ++ 
Sbjct: 63  VK-KYSMVLVNGVVENKEAIDATLNSCATD-WTVERMPATDRNILRVAVFEMRHEKPALA 120

Query: 123 VEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRK 156
             V I+E V IA  +   + P+FIN VL K++RK
Sbjct: 121 AGVAINEAVEIAKAYGTEESPRFINGVLGKLARK 154


>gi|160872402|ref|ZP_02062534.1| transcription antitermination factor NusB [Rickettsiella grylli]
 gi|159121201|gb|EDP46539.1| transcription antitermination factor NusB [Rickettsiella grylli]
          Length = 148

 Score = 68.9 bits (167), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 47/157 (29%), Positives = 80/157 (50%), Gaps = 16/157 (10%)

Query: 1   MTIQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESV 60
           MT +  K + K   R   AR  AVQA+YQ  +    T E  S  +T +F A  E+     
Sbjct: 1   MTQKSKKNNFKAKQR---ARRFAVQAIYQWQL----TQETFSVIQT-KFLAQEEMK---- 48

Query: 61  YLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHS 120
              VD  +F +I+ G+++  + +D  + S +       +LD +  +ILR G  EL+ C  
Sbjct: 49  --SVDTAYFTLIVQGILNDHELLDRYLQSFVDR--PLCQLDCVEWAILRLGTYELLNCSE 104

Query: 121 VPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKE 157
           +P +VI++E + +A  F   D  K++N +L +++ K 
Sbjct: 105 IPYKVILNEAIELAKMFGATDSYKYVNGILHRIAEKN 141


>gi|168705385|ref|ZP_02737662.1| transcription antitermination protein NusB [Gemmata obscuriglobus
           UQM 2246]
          Length = 139

 Score = 68.9 bits (167), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 41/148 (27%), Positives = 71/148 (47%), Gaps = 13/148 (8%)

Query: 24  VQALYQIDIIGCSTT-EIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQH 82
           +Q L+Q D        + I ++   R   D E+   ++ L+           GV  RK  
Sbjct: 3   LQLLFQWDQNPTKVPRKAIQQFARDRLLGDAEMSTYALSLY----------DGVAGRKDA 52

Query: 83  IDLLISSCLTEKWSFSRLDMILCSILRAGVLELI-ECHSVPVEVIISEYVCIAHDFFYGD 141
           ID  + S  T  W  +R+  +  ++LR G  EL+ +    P+EV+I+E + +A  F   D
Sbjct: 53  IDEALKSAAT-NWRLTRMTPVDRNVLRLGAFELLFDAAPQPLEVVINEAIELAKRFGSED 111

Query: 142 EPKFINAVLDKVSRKEEIKRSGCVSAIT 169
            P F+N VLD+V +  + +++G  S  +
Sbjct: 112 SPAFVNGVLDRVGKMRDERKAGAGSGAS 139


>gi|90406964|ref|ZP_01215155.1| N utilization substance protein B [Psychromonas sp. CNPT3]
 gi|90312006|gb|EAS40100.1| N utilization substance protein B [Psychromonas sp. CNPT3]
          Length = 139

 Score = 68.6 bits (166), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 47/146 (32%), Positives = 76/146 (52%), Gaps = 14/146 (9%)

Query: 10  LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF 69
           +K + RR  AR  AVQA+YQ  I      +II ++            V+  +   D+ +F
Sbjct: 1   MKPAERRR-ARQFAVQAVYQWQITKGPVGQIIEQFS-----------VDQDFSKTDVPYF 48

Query: 70  RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISE 129
           + ++ GV+ R + ID  +S  L+ K     +DM+  +ILR  + EL     VP +V+++E
Sbjct: 49  KELLAGVVSRIETIDEKLSPYLSRK--IGDVDMVDIAILRLAMFELSYRTDVPHKVVLNE 106

Query: 130 YVCIAHDFFYGDEPKFINAVLDKVSR 155
            + +A DF   +  KF+N VLDK  R
Sbjct: 107 AIELAKDFATDESYKFVNGVLDKALR 132


>gi|15599247|ref|NP_252741.1| transcription antitermination protein NusB [Pseudomonas aeruginosa
           PAO1]
 gi|107103566|ref|ZP_01367484.1| hypothetical protein PaerPA_01004636 [Pseudomonas aeruginosa PACS2]
 gi|116052089|ref|YP_789067.1| transcription antitermination protein NusB [Pseudomonas aeruginosa
           UCBPP-PA14]
 gi|218889667|ref|YP_002438531.1| transcription antitermination protein NusB [Pseudomonas aeruginosa
           LESB58]
 gi|254242734|ref|ZP_04936056.1| NusB protein [Pseudomonas aeruginosa 2192]
 gi|296387391|ref|ZP_06876890.1| transcription antitermination protein NusB [Pseudomonas aeruginosa
           PAb1]
 gi|313109495|ref|ZP_07795451.1| NusB protein [Pseudomonas aeruginosa 39016]
 gi|22095967|sp|Q9HWX6|NUSB_PSEAE RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|9950248|gb|AAG07439.1|AE004821_12 NusB protein [Pseudomonas aeruginosa PAO1]
 gi|115587310|gb|ABJ13325.1| NusB [Pseudomonas aeruginosa UCBPP-PA14]
 gi|126196112|gb|EAZ60175.1| NusB protein [Pseudomonas aeruginosa 2192]
 gi|218769890|emb|CAW25651.1| NusB protein [Pseudomonas aeruginosa LESB58]
 gi|310881953|gb|EFQ40547.1| NusB protein [Pseudomonas aeruginosa 39016]
          Length = 159

 Score = 68.6 bits (166), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 48/146 (32%), Positives = 72/146 (49%), Gaps = 14/146 (9%)

Query: 11  KLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFR 70
           K + RR  AR  AVQALY   I G    EI +++ T           ++ +  VD  +F 
Sbjct: 17  KTAARR-KARSLAVQALYSWQIAGQPLHEIEAQFRT-----------DNDFSEVDGAYFH 64

Query: 71  VIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEY 130
            I+HGV  +K  +D     CL      + +D +  +ILR    EL     VP +V+I+E 
Sbjct: 65  EILHGVPRQKSELDSTFEPCLDR--PLAEIDPVELAILRLSTYELRNRIDVPYKVVINEG 122

Query: 131 VCIAHDFFYGDEPKFINAVLDKVSRK 156
           + +A  F   D  KF+N VLDK++ +
Sbjct: 123 IELAKTFGATDGHKFVNGVLDKLAPR 148


>gi|152985013|ref|YP_001346435.1| transcription antitermination protein NusB [Pseudomonas aeruginosa
           PA7]
 gi|150960171|gb|ABR82196.1| transcription antitermination factor NusB [Pseudomonas aeruginosa
           PA7]
          Length = 159

 Score = 68.6 bits (166), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 48/146 (32%), Positives = 72/146 (49%), Gaps = 14/146 (9%)

Query: 11  KLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFR 70
           K + RR  AR  AVQALY   I G    EI +++ T           ++ +  VD  +F 
Sbjct: 17  KTAARR-KARSLAVQALYSWQIAGQPLHEIEAQFRT-----------DNDFSEVDGAYFH 64

Query: 71  VIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEY 130
            I+HGV  +K  +D     CL      + +D +  +ILR    EL     VP +V+I+E 
Sbjct: 65  EILHGVPRQKSELDSTFEPCLDR--PLAEIDPVELAILRLSTYELRNRIDVPYKVVINEG 122

Query: 131 VCIAHDFFYGDEPKFINAVLDKVSRK 156
           + +A  F   D  KF+N VLDK++ +
Sbjct: 123 IELAKTFGATDGHKFVNGVLDKLAPR 148


>gi|328947375|ref|YP_004364712.1| NusB antitermination factor [Treponema succinifaciens DSM 2489]
 gi|328447699|gb|AEB13415.1| NusB antitermination factor [Treponema succinifaciens DSM 2489]
          Length = 161

 Score = 68.6 bits (166), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 49/164 (29%), Positives = 82/164 (50%), Gaps = 23/164 (14%)

Query: 12  LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYL--------- 62
           +S R G  R+ AVQALY  D+ G ++ E + + E  +   D+E +    ++         
Sbjct: 1   MSRRNG--RIFAVQALYSYDV-GKASLEDLLKLEWLK--EDSENNPSGKFVLPETVTETS 55

Query: 63  ---------HVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVL 113
                        ++ R++I G ++  Q ID  I + LT  W+F RL+ +  SILR  V 
Sbjct: 56  ETEDFSQSRAESYDFARLLISGTINHIQEIDEKIKAHLTANWNFDRLNRVTLSILRISVF 115

Query: 114 ELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKE 157
            L+    +   +II E + I+ +F   D  +FINA+LD +S++E
Sbjct: 116 ALLYQKELKPTIIIDEAIAISKEFGTDDSFRFINAILDTISKEE 159


>gi|332297436|ref|YP_004439358.1| NusB antitermination factor [Treponema brennaborense DSM 12168]
 gi|332180539|gb|AEE16227.1| NusB antitermination factor [Treponema brennaborense DSM 12168]
          Length = 138

 Score = 68.6 bits (166), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 45/144 (31%), Positives = 76/144 (52%), Gaps = 10/144 (6%)

Query: 12  LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71
           ++ R+G  R+ A QAL+  D+ G S  E+++           E DV +      L + R+
Sbjct: 1   MARRKG--RILAFQALFSWDVGGMSVDELLA-------FPWMEADVLAKTDEGSLSFARL 51

Query: 72  IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
           +I G ++    ID LI + L + W F R++ +  ++LR  V  L+  H +   ++I E +
Sbjct: 52  LIAGTIEHIDEIDSLIKAHL-DSWDFERINKVDLAVLRISVYPLLYQHDIHPSIVIDEAI 110

Query: 132 CIAHDFFYGDEPKFINAVLDKVSR 155
            IA +F  GD  +FINAVLD + +
Sbjct: 111 DIAKEFGSGDSFRFINAVLDNIRK 134


>gi|254236941|ref|ZP_04930264.1| NusB protein [Pseudomonas aeruginosa C3719]
 gi|126168872|gb|EAZ54383.1| NusB protein [Pseudomonas aeruginosa C3719]
          Length = 159

 Score = 68.2 bits (165), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 50/146 (34%), Positives = 72/146 (49%), Gaps = 14/146 (9%)

Query: 11  KLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFR 70
           K + RR  AR  AVQALY   I G    EI ++     F AD +      +  VD  +F 
Sbjct: 17  KTAARR-KARSLAVQALYSWQIAGQPLHEIEAQ-----FRADND------FSEVDGAYFH 64

Query: 71  VIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEY 130
            I+HGV  +K  +D     CL      + +D +  +ILR    EL     VP +V+I+E 
Sbjct: 65  EILHGVPRQKSELDSTFEPCLDR--PLAEIDPVELAILRLSTYELRNRIDVPYKVVINEG 122

Query: 131 VCIAHDFFYGDEPKFINAVLDKVSRK 156
           + +A  F   D  KF+N VLDK++ +
Sbjct: 123 IELAKTFGATDGHKFVNGVLDKLAPR 148


>gi|146281225|ref|YP_001171378.1| transcription antitermination protein NusB [Pseudomonas stutzeri
           A1501]
 gi|166215709|sp|A4VHT5|NUSB_PSEU5 RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|145569430|gb|ABP78536.1| NusB protein [Pseudomonas stutzeri A1501]
 gi|327479379|gb|AEA82689.1| transcription antitermination protein NusB [Pseudomonas stutzeri
           DSM 4166]
          Length = 161

 Score = 68.2 bits (165), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 46/144 (31%), Positives = 76/144 (52%), Gaps = 14/144 (9%)

Query: 11  KLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFR 70
           K++ RR +AR  A+QALYQ  + G S  EI +++            V++ +  VD  +F 
Sbjct: 19  KIATRR-VARSLAMQALYQWHMAGQSLNEIEAQFR-----------VDNDFSGVDGAYFH 66

Query: 71  VIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEY 130
            +++GV  +K  +D  I+  L        LD +  +ILR    EL++   VP  V+I+E 
Sbjct: 67  ELLNGVARKKTEVDQAIAPNLDR--PLDELDPVELAILRLSTYELMQRIDVPYRVVINEG 124

Query: 131 VCIAHDFFYGDEPKFINAVLDKVS 154
           + +A  +   D  KF+N VLDK++
Sbjct: 125 IELAKVYGATDGHKFVNGVLDKLA 148


>gi|108799326|ref|YP_639523.1| transcription antitermination protein NusB [Mycobacterium sp. MCS]
 gi|119868442|ref|YP_938394.1| transcription antitermination protein NusB [Mycobacterium sp. KMS]
 gi|126434984|ref|YP_001070675.1| transcription antitermination protein NusB [Mycobacterium sp. JLS]
 gi|119390786|sp|Q1B9G7|NUSB_MYCSS RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|166215699|sp|A3PZ57|NUSB_MYCSJ RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|166215700|sp|A1UFJ6|NUSB_MYCSK RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|108769745|gb|ABG08467.1| NusB antitermination factor [Mycobacterium sp. MCS]
 gi|119694531|gb|ABL91604.1| NusB antitermination factor [Mycobacterium sp. KMS]
 gi|126234784|gb|ABN98184.1| NusB antitermination factor [Mycobacterium sp. JLS]
          Length = 162

 Score = 68.2 bits (165), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 45/145 (31%), Positives = 69/145 (47%), Gaps = 9/145 (6%)

Query: 9   DLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEW 68
           D +    R  AR  AV  L++ +  G +  E+ +   +    A T+ DV ++       +
Sbjct: 3   DRRPDRGRHQARKRAVDLLFEAEARGLTAAEVAT---SRNKLAGTQPDVTALN-----PY 54

Query: 69  FRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIIS 128
              +  GV D + HID LIS+ L + W+  RL  +  +ILR  V EL+    VP  V + 
Sbjct: 55  TVTVARGVTDHRDHIDDLISAHL-QGWTLDRLPAVDRAILRVAVWELLHAEDVPEPVAVD 113

Query: 129 EYVCIAHDFFYGDEPKFINAVLDKV 153
           E V +A      D P F+N VL +V
Sbjct: 114 EAVELAKQLSTDDSPGFVNGVLGQV 138


>gi|15609670|ref|NP_217049.1| transcription antitermination protein NusB [Mycobacterium
           tuberculosis H37Rv]
 gi|148662371|ref|YP_001283894.1| transcription antitermination protein NusB [Mycobacterium
           tuberculosis H37Ra]
 gi|148823728|ref|YP_001288482.1| transcription antitermination protein NusB [Mycobacterium
           tuberculosis F11]
 gi|167967008|ref|ZP_02549285.1| transcription antitermination protein NusB [Mycobacterium
           tuberculosis H37Ra]
 gi|215404474|ref|ZP_03416655.1| transcription antitermination protein NusB [Mycobacterium
           tuberculosis 02_1987]
 gi|215412305|ref|ZP_03421065.1| transcription antitermination protein NusB [Mycobacterium
           tuberculosis 94_M4241A]
 gi|215446785|ref|ZP_03433537.1| transcription antitermination protein NusB [Mycobacterium
           tuberculosis T85]
 gi|218754265|ref|ZP_03533061.1| transcription antitermination protein NusB [Mycobacterium
           tuberculosis GM 1503]
 gi|253798387|ref|YP_003031388.1| N utilization substance protein B nusB [Mycobacterium tuberculosis
           KZN 1435]
 gi|254232655|ref|ZP_04925982.1| N utilization substance protein nusB (nusb protein) [Mycobacterium
           tuberculosis C]
 gi|254366739|ref|ZP_04982782.1| N utilization substance protein nusB (nusb protein) [Mycobacterium
           tuberculosis str. Haarlem]
 gi|254551582|ref|ZP_05142029.1| transcription antitermination protein NusB [Mycobacterium
           tuberculosis '98-R604 INH-RIF-EM']
 gi|289553678|ref|ZP_06442888.1| N utilization substance protein B nusB [Mycobacterium tuberculosis
           KZN 605]
 gi|289746319|ref|ZP_06505697.1| N utilization substance protein nusB [Mycobacterium tuberculosis
           02_1987]
 gi|289758663|ref|ZP_06518041.1| transcription antitermination protein NusB [Mycobacterium
           tuberculosis T85]
 gi|289762701|ref|ZP_06522079.1| N utilization substance protein nusB (nusb protein) [Mycobacterium
           tuberculosis GM 1503]
 gi|294994358|ref|ZP_06800049.1| transcription antitermination protein NusB [Mycobacterium
           tuberculosis 210]
 gi|297635143|ref|ZP_06952923.1| transcription antitermination protein NusB [Mycobacterium
           tuberculosis KZN 4207]
 gi|297732134|ref|ZP_06961252.1| transcription antitermination protein NusB [Mycobacterium
           tuberculosis KZN R506]
 gi|298526007|ref|ZP_07013416.1| transcription antitermination protein NusB [Mycobacterium
           tuberculosis 94_M4241A]
 gi|306776807|ref|ZP_07415144.1| N utilization substance protein B nusB [Mycobacterium tuberculosis
           SUMu001]
 gi|306780573|ref|ZP_07418910.1| N utilization substance protein B nusB [Mycobacterium tuberculosis
           SUMu002]
 gi|306789935|ref|ZP_07428257.1| N utilization substance protein B nusB [Mycobacterium tuberculosis
           SUMu004]
 gi|313659467|ref|ZP_07816347.1| transcription antitermination protein NusB [Mycobacterium
           tuberculosis KZN V2475]
 gi|7387976|sp|P95020|NUSB_MYCTU RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|166215701|sp|A5U5N2|NUSB_MYCTA RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|8569494|pdb|1EYV|A Chain A, The Crystal Structure Of Nusb From Mycobacterium
           Tuberculosis
 gi|8569495|pdb|1EYV|B Chain B, The Crystal Structure Of Nusb From Mycobacterium
           Tuberculosis
 gi|1781069|emb|CAB06175.1| N UTILIZATION SUBSTANCE PROTEIN NUSB (NUSB PROTEIN) [Mycobacterium
           tuberculosis H37Rv]
 gi|124601714|gb|EAY60724.1| N utilization substance protein nusB (nusb protein) [Mycobacterium
           tuberculosis C]
 gi|134152250|gb|EBA44295.1| N utilization substance protein nusB (nusb protein) [Mycobacterium
           tuberculosis str. Haarlem]
 gi|148506523|gb|ABQ74332.1| transcription antitermination protein NusB [Mycobacterium
           tuberculosis H37Ra]
 gi|148722255|gb|ABR06880.1| N utilization substance protein B nusB [Mycobacterium tuberculosis
           F11]
 gi|253319890|gb|ACT24493.1| N utilization substance protein B nusB [Mycobacterium tuberculosis
           KZN 1435]
 gi|289438310|gb|EFD20803.1| N utilization substance protein B nusB [Mycobacterium tuberculosis
           KZN 605]
 gi|289686847|gb|EFD54335.1| N utilization substance protein nusB [Mycobacterium tuberculosis
           02_1987]
 gi|289710207|gb|EFD74223.1| N utilization substance protein nusB (nusb protein) [Mycobacterium
           tuberculosis GM 1503]
 gi|289714227|gb|EFD78239.1| transcription antitermination protein NusB [Mycobacterium
           tuberculosis T85]
 gi|298495801|gb|EFI31095.1| transcription antitermination protein NusB [Mycobacterium
           tuberculosis 94_M4241A]
 gi|308214814|gb|EFO74213.1| N utilization substance protein B nusB [Mycobacterium tuberculosis
           SUMu001]
 gi|308326587|gb|EFP15438.1| N utilization substance protein B nusB [Mycobacterium tuberculosis
           SUMu002]
 gi|308333625|gb|EFP22476.1| N utilization substance protein B nusB [Mycobacterium tuberculosis
           SUMu004]
 gi|323718889|gb|EGB28044.1| N utilization substance protein B nusB [Mycobacterium tuberculosis
           CDC1551A]
 gi|326904148|gb|EGE51081.1| N utilization substance protein B nusB [Mycobacterium tuberculosis
           W-148]
 gi|328458157|gb|AEB03580.1| N utilization substance protein B nusB [Mycobacterium tuberculosis
           KZN 4207]
          Length = 156

 Score = 67.8 bits (164), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 43/148 (29%), Positives = 75/148 (50%), Gaps = 12/148 (8%)

Query: 6   NKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVD 65
           ++K ++  H+   AR  AV  L++ ++ G S  E++   +T    A+ + D+  ++    
Sbjct: 3   DRKPVRGRHQ---ARKRAVALLFEAEVRGISAAEVV---DTRAALAEAKPDIARLH---- 52

Query: 66  LEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEV 125
             +   +  GV +   HID LI++ L   W+  RL  +  +ILR  V EL+    VP  V
Sbjct: 53  -PYTAAVARGVSEHAAHIDDLITAHL-RGWTLDRLPAVDRAILRVSVWELLHAADVPEPV 110

Query: 126 IISEYVCIAHDFFYGDEPKFINAVLDKV 153
           ++ E V +A +    D P F+N VL +V
Sbjct: 111 VVDEAVQLAKELSTDDSPGFVNGVLGQV 138


>gi|254282810|ref|ZP_04957778.1| transcription antitermination factor NusB [gamma proteobacterium
           NOR51-B]
 gi|219679013|gb|EED35362.1| transcription antitermination factor NusB [gamma proteobacterium
           NOR51-B]
          Length = 149

 Score = 67.8 bits (164), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 47/144 (32%), Positives = 75/144 (52%), Gaps = 13/144 (9%)

Query: 12  LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71
           L+ RR  AR  A+QALYQ  +     TEI +E+            V++ + HVD E+F  
Sbjct: 8   LAARRRKARHYALQALYQWTMNRNDLTEIEAEFR-----------VDNDFSHVDGEYFHE 56

Query: 72  IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
           ++ G++     +D  +   L    S S LD +  ++LR G  EL +   VP +V I+E V
Sbjct: 57  LLTGIVRTADSLDESLVPLLDR--SISELDPVERNLLRLGAFELRDRIDVPYKVAINEAV 114

Query: 132 CIAHDFFYGDEPKFINAVLDKVSR 155
            +A  F   D  +++N VLDK+++
Sbjct: 115 ALAKKFGATDSFRYVNGVLDKLAQ 138


>gi|31793715|ref|NP_856208.1| transcription antitermination protein NusB [Mycobacterium bovis
           AF2122/97]
 gi|121638417|ref|YP_978641.1| transcription antitermination protein NusB [Mycobacterium bovis BCG
           str. Pasteur 1173P2]
 gi|215427926|ref|ZP_03425845.1| transcription antitermination protein NusB [Mycobacterium
           tuberculosis T92]
 gi|215431478|ref|ZP_03429397.1| transcription antitermination protein NusB [Mycobacterium
           tuberculosis EAS054]
 gi|219558534|ref|ZP_03537610.1| transcription antitermination protein NusB [Mycobacterium
           tuberculosis T17]
 gi|224990911|ref|YP_002645598.1| transcription antitermination protein [Mycobacterium bovis BCG str.
           Tokyo 172]
 gi|260187545|ref|ZP_05765019.1| transcription antitermination protein NusB [Mycobacterium
           tuberculosis CPHL_A]
 gi|260201657|ref|ZP_05769148.1| transcription antitermination protein NusB [Mycobacterium
           tuberculosis T46]
 gi|260205850|ref|ZP_05773341.1| transcription antitermination protein NusB [Mycobacterium
           tuberculosis K85]
 gi|289444068|ref|ZP_06433812.1| transcription antitermination factor NusB [Mycobacterium
           tuberculosis T46]
 gi|289448181|ref|ZP_06437925.1| N utilization substance protein B nusB [Mycobacterium tuberculosis
           CPHL_A]
 gi|289570699|ref|ZP_06450926.1| N utilization substance protein B nusB [Mycobacterium tuberculosis
           T17]
 gi|289575238|ref|ZP_06455465.1| N utilization substance protein B nusB [Mycobacterium tuberculosis
           K85]
 gi|289751150|ref|ZP_06510528.1| N utilization substance protein B nusB [Mycobacterium tuberculosis
           T92]
 gi|289754643|ref|ZP_06514021.1| transcription antitermination protein NusB [Mycobacterium
           tuberculosis EAS054]
 gi|39931755|sp|Q7TYC8|NUSB_MYCBO RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|166215697|sp|A1KLN0|NUSB_MYCBP RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|254772648|sp|C1AF01|NUSB_MYCBT RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|31619309|emb|CAD94747.1| N UTILIZATION SUBSTANCE PROTEIN NUSB (NUSB PROTEIN) [Mycobacterium
           bovis AF2122/97]
 gi|121494065|emb|CAL72543.1| N utilization substance protein nusB [Mycobacterium bovis BCG str.
           Pasteur 1173P2]
 gi|224774024|dbj|BAH26830.1| transcription antitermination protein [Mycobacterium bovis BCG str.
           Tokyo 172]
 gi|289416987|gb|EFD14227.1| transcription antitermination factor NusB [Mycobacterium
           tuberculosis T46]
 gi|289421139|gb|EFD18340.1| N utilization substance protein B nusB [Mycobacterium tuberculosis
           CPHL_A]
 gi|289539669|gb|EFD44247.1| N utilization substance protein B nusB [Mycobacterium tuberculosis
           K85]
 gi|289544453|gb|EFD48101.1| N utilization substance protein B nusB [Mycobacterium tuberculosis
           T17]
 gi|289691737|gb|EFD59166.1| N utilization substance protein B nusB [Mycobacterium tuberculosis
           T92]
 gi|289695230|gb|EFD62659.1| transcription antitermination protein NusB [Mycobacterium
           tuberculosis EAS054]
          Length = 156

 Score = 67.8 bits (164), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 43/148 (29%), Positives = 75/148 (50%), Gaps = 12/148 (8%)

Query: 6   NKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVD 65
           ++K ++  H+   AR  AV  L++ ++ G S  E++   +T    A+ + D+  ++    
Sbjct: 3   DRKPVRGRHQ---ARKRAVDLLFEAEVRGISAAEVV---DTRAALAEAKPDIARLH---- 52

Query: 66  LEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEV 125
             +   +  GV +   HID LI++ L   W+  RL  +  +ILR  V EL+    VP  V
Sbjct: 53  -PYTAAVARGVSEHAAHIDDLITAHL-RGWTLDRLPAVDRAILRVSVWELLHAADVPEPV 110

Query: 126 IISEYVCIAHDFFYGDEPKFINAVLDKV 153
           ++ E V +A +    D P F+N VL +V
Sbjct: 111 VVDEAVQLAKELSTDDSPGFVNGVLGQV 138


>gi|308371048|ref|ZP_07667079.1| putative transcription antitermination factor NusB [Mycobacterium
           tuberculosis SUMu003]
 gi|308373441|ref|ZP_07667582.1| putative transcription antitermination factor NusB [Mycobacterium
           tuberculosis SUMu005]
 gi|308377044|ref|ZP_07668414.1| putative transcription antitermination factor NusB [Mycobacterium
           tuberculosis SUMu008]
 gi|308378420|ref|ZP_07668745.1| putative transcription antitermination factor NusB [Mycobacterium
           tuberculosis SUMu009]
 gi|308405376|ref|ZP_07669465.1| putative transcription antitermination factor NusB [Mycobacterium
           tuberculosis SUMu012]
 gi|308330008|gb|EFP18859.1| putative transcription antitermination factor NusB [Mycobacterium
           tuberculosis SUMu003]
 gi|308337652|gb|EFP26503.1| putative transcription antitermination factor NusB [Mycobacterium
           tuberculosis SUMu005]
 gi|308349124|gb|EFP37975.1| putative transcription antitermination factor NusB [Mycobacterium
           tuberculosis SUMu008]
 gi|308352601|gb|EFP41452.1| putative transcription antitermination factor NusB [Mycobacterium
           tuberculosis SUMu009]
 gi|308365233|gb|EFP54084.1| putative transcription antitermination factor NusB [Mycobacterium
           tuberculosis SUMu012]
          Length = 249

 Score = 67.4 bits (163), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 43/148 (29%), Positives = 75/148 (50%), Gaps = 12/148 (8%)

Query: 6   NKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVD 65
           ++K ++  H+   AR  AV  L++ ++ G S  E++   +T    A+ + D+  ++    
Sbjct: 3   DRKPVRGRHQ---ARKRAVALLFEAEVRGISAAEVV---DTRAALAEAKPDIARLH---- 52

Query: 66  LEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEV 125
             +   +  GV +   HID LI++ L   W+  RL  +  +ILR  V EL+    VP  V
Sbjct: 53  -PYTAAVARGVSEHAAHIDDLITAHL-RGWTLDRLPAVDRAILRVSVWELLHAADVPEPV 110

Query: 126 IISEYVCIAHDFFYGDEPKFINAVLDKV 153
           ++ E V +A +    D P F+N VL +V
Sbjct: 111 VVDEAVQLAKELSTDDSPGFVNGVLGQV 138


>gi|331006273|ref|ZP_08329591.1| Transcription termination protein NusB [gamma proteobacterium
           IMCC1989]
 gi|330419920|gb|EGG94268.1| Transcription termination protein NusB [gamma proteobacterium
           IMCC1989]
          Length = 152

 Score = 67.4 bits (163), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 45/139 (32%), Positives = 68/139 (48%), Gaps = 12/139 (8%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           R  AR   +QALYQ  + G +  EI +E+            V++   H D ++F  ++H 
Sbjct: 13  RRKARHFGMQALYQWSMTGAALNEIEAEFH-----------VDNDMTHTDTDYFHELVHE 61

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
           +  R   +D      L ++ S   LD +  S+LR    EL     VP +V+I+E V +A 
Sbjct: 62  IPARVTELDEAYFPHLQDR-SVEELDPVTLSLLRLATYELAHRIDVPYKVVINEAVSLAK 120

Query: 136 DFFYGDEPKFINAVLDKVS 154
            F   D  KFIN VLDK++
Sbjct: 121 KFGATDSFKFINGVLDKLA 139


>gi|77164321|ref|YP_342846.1| NusB antitermination factor [Nitrosococcus oceani ATCC 19707]
 gi|119390790|sp|Q3JCY0|NUSB_NITOC RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|76882635|gb|ABA57316.1| NusB antitermination factor [Nitrosococcus oceani ATCC 19707]
          Length = 148

 Score = 67.0 bits (162), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 42/145 (28%), Positives = 75/145 (51%), Gaps = 14/145 (9%)

Query: 12  LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71
           +S+RR  AR AA+Q LYQ  ++G    +I           D E  V+ +   +D  +F+ 
Sbjct: 1   MSNRRSKARTAALQGLYQWQLMGQDVDKI-----------DIEFIVQDIR-GIDHAYFQE 48

Query: 72  IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
           ++ GV  R+  +D  +   L      + +D + C+ILR G  EL+    +P  V+++E +
Sbjct: 49  LLRGVPQRQGELDECLGPFLDR--PINEVDPVECAILRIGAFELLCRPEIPYRVVLNEAI 106

Query: 132 CIAHDFFYGDEPKFINAVLDKVSRK 156
            +A  F      +++N +LDKV++K
Sbjct: 107 ELAKRFGAEHGHRYVNGILDKVAQK 131


>gi|15842067|ref|NP_337104.1| transcription antitermination protein NusB [Mycobacterium
           tuberculosis CDC1551]
 gi|13882348|gb|AAK46918.1| N utilization substance protein B [Mycobacterium tuberculosis
           CDC1551]
          Length = 290

 Score = 67.0 bits (162), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 43/148 (29%), Positives = 75/148 (50%), Gaps = 12/148 (8%)

Query: 6   NKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVD 65
           ++K ++  H+   AR  AV  L++ ++ G S  E++   +T    A+ + D+  ++    
Sbjct: 3   DRKPVRGRHQ---ARKRAVALLFEAEVRGISAAEVV---DTRAALAEAKPDIARLH---- 52

Query: 66  LEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEV 125
             +   +  GV +   HID LI++ L   W+  RL  +  +ILR  V EL+    VP  V
Sbjct: 53  -PYTAAVARGVSEHAAHIDDLITAHL-RGWTLDRLPAVDRAILRVSVWELLHAADVPEPV 110

Query: 126 IISEYVCIAHDFFYGDEPKFINAVLDKV 153
           ++ E V +A +    D P F+N VL +V
Sbjct: 111 VVDEAVQLAKELSTDDSPGFVNGVLGQV 138


>gi|15639999|ref|NP_219452.1| transcription antitermination protein NusB [Treponema pallidum
           subsp. pallidum str. Nichols]
 gi|189026238|ref|YP_001934010.1| transcription antitermination protein NusB [Treponema pallidum
           subsp. pallidum SS14]
 gi|7387973|sp|O83979|NUSB_TREPA RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|238689355|sp|B2S4Q2|NUSB_TREPS RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|3323342|gb|AAC65965.1| N utilization substance protein B (nusB) [Treponema pallidum subsp.
           pallidum str. Nichols]
 gi|189018813|gb|ACD71431.1| N utilization substance protein B [Treponema pallidum subsp.
           pallidum SS14]
 gi|291060372|gb|ADD73107.1| transcription antitermination factor NusB [Treponema pallidum
           subsp. pallidum str. Chicago]
          Length = 141

 Score = 66.6 bits (161), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 47/145 (32%), Positives = 72/145 (49%), Gaps = 12/145 (8%)

Query: 11  KLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFR 70
           K+  RR  AR+ A QAL+  D  G  T E ++++   R                DL + R
Sbjct: 7   KIGRRR--ARILAFQALFAWDAAGI-TPETLTQFTWLRRNPPPSTQ--------DLGFSR 55

Query: 71  VIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEY 130
           ++  G ++  + ID  +SS L E W F RL+ +  +ILR     L+    +P  V+I E 
Sbjct: 56  LLFLGTLEHLREIDGCVSSRL-EHWDFVRLNKVDKAILRLSAYSLLFQKDIPPVVVIHEA 114

Query: 131 VCIAHDFFYGDEPKFINAVLDKVSR 155
           V IA DF   D  +F+N VLD +++
Sbjct: 115 VSIARDFGTDDSFRFVNGVLDNIAK 139


>gi|152998045|ref|YP_001342880.1| NusB antitermination factor [Marinomonas sp. MWYL1]
 gi|226738905|sp|A6W2L6|NUSB_MARMS RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|150838969|gb|ABR72945.1| NusB antitermination factor [Marinomonas sp. MWYL1]
          Length = 174

 Score = 66.6 bits (161), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 51/164 (31%), Positives = 81/164 (49%), Gaps = 16/164 (9%)

Query: 1   MTIQDNKKDLKLSHR--RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVE 58
            T    +KD K S    R  +R  A+QA+YQ  +   + +EI ++     F  D + D++
Sbjct: 10  QTPAPKRKDKKPSRSQLRSASRRLALQAVYQWQMNKTAVSEIETQ-----FVIDQDRDMD 64

Query: 59  SVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIEC 118
           S     D  +FR ++ GV    + +D L    L      S LD I  +++R G  EL + 
Sbjct: 65  SC----DKVYFRELLQGVTASAKKLDTLFEELLDR--PLSELDPIELAVMRIGSYELSQR 118

Query: 119 HSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVS---RKEEI 159
             VP  V I+E V +A  F   +  K++N +LDK++   R+EEI
Sbjct: 119 LDVPYRVAINESVELAKGFGATESHKYVNGILDKLAQRVRREEI 162


>gi|167623143|ref|YP_001673437.1| transcription antitermination protein NusB [Shewanella halifaxensis
           HAW-EB4]
 gi|189035905|sp|B0TJZ1|NUSB_SHEHH RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|167353165|gb|ABZ75778.1| NusB antitermination factor [Shewanella halifaxensis HAW-EB4]
          Length = 135

 Score = 66.6 bits (161), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 48/144 (33%), Positives = 73/144 (50%), Gaps = 14/144 (9%)

Query: 10  LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF 69
           +K S RR   RLA VQA+Y   + G +  ++  E+ T       E DV  V    D+ +F
Sbjct: 1   MKPSERRKARRLA-VQAIYSWQLSGNNIADVEHEFLT-------EQDVAGV----DIAYF 48

Query: 70  RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISE 129
           R ++ GV  +K  +D LI+  LT       +D +  +I+R    EL     VP +V I+E
Sbjct: 49  RELLGGVATKKSQLDELITPFLTR--PLDEVDPVEKAIVRIATYELTFRKDVPYKVAINE 106

Query: 130 YVCIAHDFFYGDEPKFINAVLDKV 153
            + +A  F   D  KF+N +LDK+
Sbjct: 107 AIELAKAFGAEDGHKFVNGILDKL 130


>gi|119474641|ref|ZP_01614994.1| transcription antitermination protein NusB [marine gamma
           proteobacterium HTCC2143]
 gi|119450844|gb|EAW32077.1| transcription antitermination protein NusB [marine gamma
           proteobacterium HTCC2143]
          Length = 158

 Score = 66.6 bits (161), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 49/153 (32%), Positives = 76/153 (49%), Gaps = 14/153 (9%)

Query: 2   TIQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVY 61
            I  NK++   + RR  AR   +QALYQ  +   +  +I       +F AD +       
Sbjct: 3   NIVSNKQEFNPAARRK-ARHYGMQALYQWQMTKYAVKDI-----ELQFLADYDFS----- 51

Query: 62  LHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSV 121
             VD+E+F  I+H V    + ++   +  L    +   LD I  S+LR G  ELI+   +
Sbjct: 52  -QVDVEYFHDIVHHVPANLEELEAAFTPYLDR--AMGDLDPIELSLLRLGSYELIKRIDI 108

Query: 122 PVEVIISEYVCIAHDFFYGDEPKFINAVLDKVS 154
           P +V+I+E V +A  F   D  K+IN VLDK++
Sbjct: 109 PYKVVINEAVSLAKKFGATDGHKYINGVLDKLA 141


>gi|119502844|ref|ZP_01624929.1| transcription antitermination protein NusB [marine gamma
           proteobacterium HTCC2080]
 gi|119461190|gb|EAW42280.1| transcription antitermination protein NusB [marine gamma
           proteobacterium HTCC2080]
          Length = 148

 Score = 66.6 bits (161), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 42/133 (31%), Positives = 66/133 (49%), Gaps = 13/133 (9%)

Query: 23  AVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQH 82
           A+Q LYQ  +   +  EI +E+            +++ + HVD E++R ++ GV+     
Sbjct: 18  ALQGLYQWSMTRANLAEIEAEFR-----------IDNDFSHVDGEYYRSLLTGVVQDAGD 66

Query: 83  IDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDE 142
           +D      L        LD +  ++LR G  EL E   VP  V+I+E V +A  F   D 
Sbjct: 67  LDSSFEQLLDRP--LDELDPVERALLRLGTFELKERIDVPYRVVINESVALAKKFGATDS 124

Query: 143 PKFINAVLDKVSR 155
            ++IN VLDKV+R
Sbjct: 125 YRYINGVLDKVAR 137


>gi|300114881|ref|YP_003761456.1| NusB antitermination factor [Nitrosococcus watsonii C-113]
 gi|299540818|gb|ADJ29135.1| NusB antitermination factor [Nitrosococcus watsonii C-113]
          Length = 148

 Score = 66.2 bits (160), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 42/145 (28%), Positives = 73/145 (50%), Gaps = 14/145 (9%)

Query: 12  LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71
           +S+RR  AR AA+Q LYQ  + G    +I           D E  V+ +   +D  +F+ 
Sbjct: 1   MSNRRSKARTAALQGLYQWQLTGQDVDKI-----------DIEFIVQDIR-GIDHAYFQA 48

Query: 72  IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
           ++ GV  R+  +D  +   L        +D + C+ILR G  EL+    +P  V+++E +
Sbjct: 49  LLQGVPQRQWELDECLGPFLDR--PIHEIDPVECAILRIGAFELLCRPEIPYRVVLNEAI 106

Query: 132 CIAHDFFYGDEPKFINAVLDKVSRK 156
            +A  F      +++N +LDKV++K
Sbjct: 107 ELAKRFGAEHGHRYVNGILDKVAQK 131


>gi|94500355|ref|ZP_01306887.1| transcription antitermination protein NusB [Oceanobacter sp. RED65]
 gi|94427390|gb|EAT12368.1| transcription antitermination protein NusB [Oceanobacter sp. RED65]
          Length = 128

 Score = 66.2 bits (160), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 43/132 (32%), Positives = 68/132 (51%), Gaps = 13/132 (9%)

Query: 24  VQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHI 83
           +QALYQ D+ G S + I +E     F  D ++        VD E+FR I+ GV      +
Sbjct: 1   MQALYQWDLAGASLSNIEAE-----FLTDNDMS------KVDTEYFRDILRGVPRELDDL 49

Query: 84  DLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEP 143
           D  ++ CL+   +   +  +  +ILR G  EL+    VP  V+I+E V ++  F   +  
Sbjct: 50  DEKLAPCLSR--NMQEVTPVERAILRLGAYELLHRIDVPYRVVINESVELSKKFGANESH 107

Query: 144 KFINAVLDKVSR 155
           KFIN  LDK+++
Sbjct: 108 KFINGALDKLAQ 119


>gi|297584560|ref|YP_003700340.1| NusB antitermination factor [Bacillus selenitireducens MLS10]
 gi|297143017|gb|ADH99774.1| NusB antitermination factor [Bacillus selenitireducens MLS10]
          Length = 134

 Score = 66.2 bits (160), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 42/148 (28%), Positives = 71/148 (47%), Gaps = 18/148 (12%)

Query: 15  RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74
           +R +AR+ A+QALYQ+++ G +  E I          D               +   ++ 
Sbjct: 2   KRRVARIKAIQALYQVEMTGVNPEEAIKTVLEENESMDP--------------YLLTLVE 47

Query: 75  GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134
            V++    +D+ I   + + W  SRL  +  +I+R  + E+I    VPV V I+E + +A
Sbjct: 48  RVLEEMDELDIKIQDSM-DNWQLSRLARVDRAIMRIAMYEMIHSDDVPVSVAINEAIDLA 106

Query: 135 HDFFYGDEP--KFINAVLDKVSRKEEIK 160
              F GDE   KF+N VL   ++K E+ 
Sbjct: 107 RG-FSGDEESGKFVNGVLSNAAKKLEVN 133


>gi|116327424|ref|YP_797144.1| transcription antitermination protein NusB [Leptospira
           borgpetersenii serovar Hardjo-bovis L550]
 gi|116331982|ref|YP_801700.1| transcription antitermination protein NusB [Leptospira
           borgpetersenii serovar Hardjo-bovis JB197]
 gi|122280285|sp|Q04Q78|NUSB_LEPBJ RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|122284775|sp|Q054N4|NUSB_LEPBL RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|116120168|gb|ABJ78211.1| Transcription antitermination protein [Leptospira borgpetersenii
           serovar Hardjo-bovis L550]
 gi|116125671|gb|ABJ76942.1| Transcription antitermination protein [Leptospira borgpetersenii
           serovar Hardjo-bovis JB197]
          Length = 138

 Score = 66.2 bits (160), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 44/146 (30%), Positives = 76/146 (52%), Gaps = 13/146 (8%)

Query: 12  LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71
           +S RR  +R  AV ALYQ+++ G    E++ +++ Y    D + + E     V       
Sbjct: 1   MSARR-TSREIAVMALYQLELTGPPLKEVL-KFKWY----DKKTEPEERDFAVS------ 48

Query: 72  IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
           I++GV+  ++ ID LI    ++ W FSR+ ++  +ILR  V  L+    VP  V I E V
Sbjct: 49  IVNGVVKNQEQIDTLIKKY-SKNWDFSRISIVNKAILRLSVFALLYSWEVPKNVTIDEAV 107

Query: 132 CIAHDFFYGDEPKFINAVLDKVSRKE 157
            +  +F   +  +F+N +LD + + E
Sbjct: 108 ELTKEFESEESARFVNGILDAILKNE 133


>gi|51244954|ref|YP_064838.1| transcription termination factor (NusB) [Desulfotalea psychrophila
           LSv54]
 gi|81642559|sp|Q6AP93|NUSB_DESPS RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|50875991|emb|CAG35831.1| probable transcription termination factor (NusB) [Desulfotalea
           psychrophila LSv54]
          Length = 141

 Score = 66.2 bits (160), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 49/141 (34%), Positives = 69/141 (48%), Gaps = 12/141 (8%)

Query: 16  RGIARLAAVQALYQIDIIGCST---TEIISEYETYRFCADTELDVESVYLHVDLEWFRVI 72
           R  AR AA+Q LYQ D I  S     E+   +E  +FC   +++ +     ++L      
Sbjct: 4   RRFAREAALQFLYQDDFIPESADTPGELKERFE--QFCEIYQVNKKGRTYALNL------ 55

Query: 73  IHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVC 132
           I GV+  ++ ID LI       W  SR+     ++LR    E+  C  VP EV I+E V 
Sbjct: 56  IAGVLADQEAIDRLIEEAAV-NWRMSRISATDRNLLRVATFEINFCDDVPAEVAINEAVE 114

Query: 133 IAHDFFYGDEPKFINAVLDKV 153
           IA  F   + PKF+N VLD V
Sbjct: 115 IAKRFCGDESPKFVNGVLDAV 135


>gi|92114700|ref|YP_574628.1| NusB antitermination factor [Chromohalobacter salexigens DSM 3043]
 gi|119390757|sp|Q1QUC9|NUSB_CHRSD RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|91797790|gb|ABE59929.1| NusB antitermination factor [Chromohalobacter salexigens DSM 3043]
          Length = 166

 Score = 65.9 bits (159), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 48/145 (33%), Positives = 71/145 (48%), Gaps = 8/145 (5%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHV----DLEWFRV 71
           R  AR  AVQ LYQ  + G S T + SE+      AD +L+    +  V    DL  F  
Sbjct: 15  RRAARELAVQGLYQWQMTGKSITAVESEFRAQ--IADEDLEDHENWHKVMGIADLALFHE 72

Query: 72  IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
           ++H V   ++ ID  I+  L  +     LD I  +ILR G  EL     VP   +I+E +
Sbjct: 73  LLHNVAADREAIDKTIAPLLDRR--LEDLDRIELAILRLGAYELKYRLEVPYRAVINEGI 130

Query: 132 CIAHDFFYGDEPKFINAVLDKVSRK 156
            +A  F   D  K++N +LDK++ +
Sbjct: 131 ELAKAFGATDGHKYVNGILDKLASR 155


>gi|254787582|ref|YP_003075011.1| transcription antitermination protein NusB [Teredinibacter turnerae
           T7901]
 gi|259514910|sp|C5BS84|NUSB_TERTT RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|237683677|gb|ACR10941.1| putative transcription antitermination factor NusB [Teredinibacter
           turnerae T7901]
          Length = 147

 Score = 65.9 bits (159), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 46/139 (33%), Positives = 67/139 (48%), Gaps = 12/139 (8%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           R  AR  A+QA+YQ  + G     I +E+ T     D ++        VD E+F  + HG
Sbjct: 8   RSRARHFAMQAIYQWQMNGNPLHVIEAEFHT-----DNDMS------KVDTEYFHELFHG 56

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
           V   K  +D      L +     +LD +  ++LR    EL     VP +V+I+E V +A 
Sbjct: 57  VAADKSALDACFLPHL-KSLPLEKLDPVTLALLRQATFELKNRVDVPYKVVINEAVNLAK 115

Query: 136 DFFYGDEPKFINAVLDKVS 154
            F   D  KF+N VLDKV+
Sbjct: 116 KFGAEDSHKFVNGVLDKVA 134


>gi|291279490|ref|YP_003496325.1| N utilization substance protein B [Deferribacter desulfuricans
           SSM1]
 gi|290754192|dbj|BAI80569.1| N utilization substance protein B [Deferribacter desulfuricans
           SSM1]
          Length = 139

 Score = 65.5 bits (158), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 45/147 (30%), Positives = 74/147 (50%), Gaps = 11/147 (7%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           + IAR  A + LYQ ++       +I ++    +  D E + E V L  + + FR++I  
Sbjct: 4   KSIAREKAFKMLYQAEMTNFKPDRLIKQF----WELDEEKN-EKVKLLAN-KLFRLVI-- 55

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
             D+K + D +IS  L E W+F RL   + + LR G+ EL    + PV  I+ EY  +A 
Sbjct: 56  --DKKGYADDIISKYLKEGWTFERLTETVKNTLRLGIAELFNTET-PVYAILDEYTTLAK 112

Query: 136 DFFYGDEPKFINAVLDKVSRKEEIKRS 162
            +       F+N VL+K+ +   I+R 
Sbjct: 113 KYEDEKAASFVNGVLEKIRKDFNIERG 139


>gi|157960994|ref|YP_001501028.1| transcription antitermination protein NusB [Shewanella pealeana
           ATCC 700345]
 gi|189035906|sp|A8H1Q6|NUSB_SHEPA RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|157845994|gb|ABV86493.1| NusB antitermination factor [Shewanella pealeana ATCC 700345]
          Length = 135

 Score = 65.5 bits (158), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 47/144 (32%), Positives = 73/144 (50%), Gaps = 14/144 (9%)

Query: 10  LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF 69
           +K S RR   RLA VQA+Y   + G +  ++  E+ T       E DV  V    D+ +F
Sbjct: 1   MKPSERRKARRLA-VQAIYSWQLSGNNIADVEHEFLT-------EQDVAGV----DIAYF 48

Query: 70  RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISE 129
           R ++ GV  +K  +D LI+  +T       +D +  +I+R    EL     VP +V I+E
Sbjct: 49  RELLGGVATKKSQLDELITPFVTR--PLDEVDPVEKAIVRIATYELTFRKDVPYKVAINE 106

Query: 130 YVCIAHDFFYGDEPKFINAVLDKV 153
            + +A  F   D  KF+N +LDK+
Sbjct: 107 AIELAKAFGAEDGHKFVNGILDKL 130


>gi|312134817|ref|YP_004002155.1| nusb antitermination factor [Caldicellulosiruptor owensensis OL]
 gi|311774868|gb|ADQ04355.1| NusB antitermination factor [Caldicellulosiruptor owensensis OL]
          Length = 134

 Score = 65.5 bits (158), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 39/127 (30%), Positives = 67/127 (52%), Gaps = 7/127 (5%)

Query: 36  STTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKW 95
            + +II  Y+ +R     EL+ +  +  +D E+   ++ GV+  +Q ID LI    ++ W
Sbjct: 12  GSQDIIEFYKKFR-----ELNQDEDFRDIDEEYLEKLLKGVIQNQQRIDSLIEKY-SKDW 65

Query: 96  SFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSR 155
             SRL M+   ++R  V EL+    VPV V I E V +++ F     P F+N +L +++ 
Sbjct: 66  PLSRLPMVELELMRVAVYELLFEEDVPVSVAIDEAVDLSNIFGIEKAPSFVNGILGRIA- 124

Query: 156 KEEIKRS 162
             E+KR 
Sbjct: 125 ANEVKRG 131


>gi|89093481|ref|ZP_01166429.1| NusB protein [Oceanospirillum sp. MED92]
 gi|89082171|gb|EAR61395.1| NusB protein [Oceanospirillum sp. MED92]
          Length = 159

 Score = 65.1 bits (157), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 45/150 (30%), Positives = 71/150 (47%), Gaps = 13/150 (8%)

Query: 7   KKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDL 66
           KK   L+ +R  AR  A+QALY   + G    E+ +++       DT           D+
Sbjct: 11  KKKPSLTTQRRNARSYALQALYSWTLAGQPLNELEAQFRVDNDMRDT-----------DI 59

Query: 67  EWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVI 126
             F  ++H +   K  +D L +  L    +   LD I  ++LR G  EL +   VP  V 
Sbjct: 60  RLFSELLHSIAGGKSELDQLYTDFLDR--NVDELDPIELNVLRIGAYELSKRFEVPYRVA 117

Query: 127 ISEYVCIAHDFFYGDEPKFINAVLDKVSRK 156
           I+E V +A  F   D  K++N VLDK++++
Sbjct: 118 INESVELAKTFGATDSHKYVNGVLDKLAQR 147


>gi|302392489|ref|YP_003828309.1| NusB antitermination factor [Acetohalobium arabaticum DSM 5501]
 gi|302204566|gb|ADL13244.1| NusB antitermination factor [Acetohalobium arabaticum DSM 5501]
          Length = 138

 Score = 64.7 bits (156), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 50/145 (34%), Positives = 68/145 (46%), Gaps = 12/145 (8%)

Query: 14  HRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVII 73
           + R  AR  AVQ LYQIDI      E   E  T R      L++E  +L         II
Sbjct: 5   YSRHEARKIAVQTLYQIDI-NDEGLEKNLEMLTNRIEG---LELEDTFLEE-------II 53

Query: 74  HGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCI 133
            G       ID  ++    E W  SR+  +  +ILR  + E++    +P+EV I E V +
Sbjct: 54  TGTYQNLSEIDKELNES-AEGWKVSRMGKVDRNILRLAIYEILYVDDIPIEVSIDEAVEL 112

Query: 134 AHDFFYGDEPKFINAVLDKVSRKEE 158
           A +F     PKFIN VL +V  K+E
Sbjct: 113 AKEFIADKSPKFINGVLGRVVSKQE 137


>gi|312127939|ref|YP_003992813.1| nusb antitermination factor [Caldicellulosiruptor hydrothermalis
           108]
 gi|311777958|gb|ADQ07444.1| NusB antitermination factor [Caldicellulosiruptor hydrothermalis
           108]
          Length = 134

 Score = 64.7 bits (156), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 40/126 (31%), Positives = 66/126 (52%), Gaps = 7/126 (5%)

Query: 37  TTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWS 96
           T +II  Y+ +R     EL+ +  +  +D ++   ++ GV+  +Q ID LI    ++ W 
Sbjct: 13  TQDIIEFYKKFR-----ELNQDEDFKDIDEKYLERLLKGVIQNQQRIDNLIEKY-SKDWP 66

Query: 97  FSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRK 156
            SRL M+   ++R  V EL+    VPV V I E V +A  F     P F+N +L +++  
Sbjct: 67  LSRLPMVELELMRMAVYELLFEEEVPVSVAIDEAVDMASIFGIEKAPSFVNGILGRIA-A 125

Query: 157 EEIKRS 162
            E+KR 
Sbjct: 126 NEVKRG 131


>gi|261856451|ref|YP_003263734.1| NusB antitermination factor [Halothiobacillus neapolitanus c2]
 gi|261836920|gb|ACX96687.1| NusB antitermination factor [Halothiobacillus neapolitanus c2]
          Length = 196

 Score = 64.7 bits (156), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 46/136 (33%), Positives = 69/136 (50%), Gaps = 13/136 (9%)

Query: 19  ARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMD 78
           AR  AVQALYQ  I+  +  +++          D +   ++  L VDLE FR I+ GV  
Sbjct: 64  ARERAVQALYQ-QILNHTPVDLL----------DAQFMEDAFMLKVDLELFRRIVRGVSA 112

Query: 79  RKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFF 138
            ++ +D   S  L      + +D I  +ILR G  ELI    +P  V I+E V +A  + 
Sbjct: 113 NEESLDEAYSPLLDR--PLAEIDPIEQAILRLGAFELIHTPEIPRAVAINEAVEMAKLYG 170

Query: 139 YGDEPKFINAVLDKVS 154
             +  K+IN VLDK++
Sbjct: 171 ATESHKYINGVLDKLA 186


>gi|326793813|ref|YP_004311633.1| NusB antitermination factor [Marinomonas mediterranea MMB-1]
 gi|326544577|gb|ADZ89797.1| NusB antitermination factor [Marinomonas mediterranea MMB-1]
          Length = 162

 Score = 64.7 bits (156), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 48/156 (30%), Positives = 76/156 (48%), Gaps = 18/156 (11%)

Query: 13  SHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVI 72
           S  R  +R  A+QA+YQ  +   +  EI           +T+  +E      D  +FR +
Sbjct: 20  SQLRSASRGLALQAIYQWQMNHSAVNEI-----------ETQFTLEQDMSACDKVYFRDL 68

Query: 73  IHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVC 132
           + GV  + + +D L    L    + S LD I  ++LR G  EL     VP  V I+E V 
Sbjct: 69  LQGVTAKAKELDSLFEELLDR--ALSELDAIELAVLRIGSYELAHRLDVPYRVAINESVE 126

Query: 133 IAHDFFYGDEPKFINAVLDKVS---RKEEI--KRSG 163
           +A  F   +  K++N +LDK++   R+EEI  +R+G
Sbjct: 127 LAKSFGASESHKYVNGILDKLAQRVRREEIAARRNG 162


>gi|307825577|ref|ZP_07655795.1| NusB antitermination factor [Methylobacter tundripaludum SV96]
 gi|307733463|gb|EFO04322.1| NusB antitermination factor [Methylobacter tundripaludum SV96]
          Length = 144

 Score = 64.7 bits (156), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 50/157 (31%), Positives = 77/157 (49%), Gaps = 18/157 (11%)

Query: 12  LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTEL-DVESVYLHVDLEWFR 70
           +S  R  AR AAVQALYQ  + G + +EI       +F  +  L D +  Y       F 
Sbjct: 1   MSQARTNARKAAVQALYQWQMAGQNLSEI-----ERQFLEEERLKDAQKSY-------FV 48

Query: 71  VIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEY 130
            + +GV      ID ++S  +        +D +  +ILR GV EL+   ++P  V+++E 
Sbjct: 49  ELFYGVPKNLDAIDQVLSEFVDR--PVDTIDPVERAILRIGVYELLYRLNMPYRVVLNEG 106

Query: 131 VCIAHDFFYGDEPKFINAVLDKV---SRKEEIKRSGC 164
           + +A DF      K++N +LDKV   +R  EIK  G 
Sbjct: 107 INLAKDFGADGSHKYVNGILDKVAQQTRAGEIKAKGA 143


>gi|312622738|ref|YP_004024351.1| nusb antitermination factor [Caldicellulosiruptor kronotskyensis
           2002]
 gi|312203205|gb|ADQ46532.1| NusB antitermination factor [Caldicellulosiruptor kronotskyensis
           2002]
          Length = 134

 Score = 64.3 bits (155), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 40/126 (31%), Positives = 66/126 (52%), Gaps = 7/126 (5%)

Query: 37  TTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWS 96
           T +II  Y+ +R     EL+ +  +  +D ++   ++ GV+  +Q ID LI    ++ W 
Sbjct: 13  TQDIIEFYKRFR-----ELNQDEDFKDIDEKYLEKLLKGVIQNQQRIDNLIEKY-SKDWP 66

Query: 97  FSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRK 156
            SRL M+   ++R  V EL+    VPV V I E V +A  F     P F+N +L +++  
Sbjct: 67  LSRLPMVELELMRIAVYELLFEEEVPVSVAIDEAVDMASIFGIEKAPSFVNGILGRIA-A 125

Query: 157 EEIKRS 162
            E+KR 
Sbjct: 126 NEVKRG 131


>gi|54307996|ref|YP_129016.1| transcription antitermination protein NusB [Photobacterium
           profundum SS9]
 gi|81615463|sp|Q6LU11|NUSB_PHOPR RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|46912422|emb|CAG19214.1| Putative NusB protein [Photobacterium profundum SS9]
          Length = 151

 Score = 64.3 bits (155), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 43/148 (29%), Positives = 75/148 (50%), Gaps = 6/148 (4%)

Query: 10  LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYL---HVDL 66
           +K + RR  AR  A+QA+Y   I   +  EI  ++ +     + E   ++  L   H DL
Sbjct: 1   MKPAARRN-ARHFAIQAIYSWQITKGNVAEIEQQFLSDDKFEEEEHQADAPILAAPHTDL 59

Query: 67  EWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVI 126
            +F  +++GV+   Q +D  +   L+       LD +  ++LR  + E+ +   VP +V+
Sbjct: 60  NYFHDLLNGVVQNHQELDSKMRPYLSR--PLQDLDQMELALLRLAMYEMTKREDVPYKVV 117

Query: 127 ISEYVCIAHDFFYGDEPKFINAVLDKVS 154
           I+E + +A  F   D  KF+N VLDK +
Sbjct: 118 INEAIELAKIFGAEDSHKFVNGVLDKAA 145


>gi|289208845|ref|YP_003460911.1| NusB antitermination factor [Thioalkalivibrio sp. K90mix]
 gi|288944476|gb|ADC72175.1| NusB antitermination factor [Thioalkalivibrio sp. K90mix]
          Length = 187

 Score = 64.3 bits (155), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 44/144 (30%), Positives = 69/144 (47%), Gaps = 13/144 (9%)

Query: 11  KLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFR 70
           +  H R +AR  A+QALY   +      +I++E     F  D E      +   D E+FR
Sbjct: 45  RARHARSVARRRAMQALYSWQMTAAEPKDILAE-----FRDDEE------HAKADAEYFR 93

Query: 71  VIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEY 130
            I+ GV   ++ +D  +   L       +LD +  ++L  G  EL E   VP  V+I+E 
Sbjct: 94  EILIGVTRNREALDARMEPYLGR--PLDQLDPVERALLWLGQWELAERIDVPYRVVINEA 151

Query: 131 VCIAHDFFYGDEPKFINAVLDKVS 154
           V +A  F      ++IN VLD++S
Sbjct: 152 VDLAKRFGAEQSHRYINGVLDRLS 175


>gi|256826969|ref|YP_003150928.1| transcription antitermination factor NusB [Cryptobacterium curtum
           DSM 15641]
 gi|256583112|gb|ACU94246.1| transcription antitermination factor NusB [Cryptobacterium curtum
           DSM 15641]
          Length = 162

 Score = 64.3 bits (155), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 43/146 (29%), Positives = 76/146 (52%), Gaps = 16/146 (10%)

Query: 14  HRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV-I 72
           H R +AR  AVQ LY+ +I     +EI+             L  ++V     L  + V +
Sbjct: 5   HERTLARRMAVQVLYEGEITDTLASEIV-------------LRPDAVPDGGALPAYAVSL 51

Query: 73  IHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVC 132
           + GV   +  ID  I++  +E WS  R+ ++  +I+R  V E+  C  VP+ V I+E V 
Sbjct: 52  VEGVCAHRVAIDNKIAAA-SENWSVGRMPLVDRAIMRLAVFEMTHCDDVPLSVSINEAVE 110

Query: 133 IAHDFFYGDE-PKFINAVLDKVSRKE 157
           +A +F   D+  +F+N +L +++R++
Sbjct: 111 LAKEFGGADDSARFVNGILGRIARQD 136


>gi|325295064|ref|YP_004281578.1| NusB antitermination factor [Desulfurobacterium thermolithotrophum
           DSM 11699]
 gi|325065512|gb|ADY73519.1| NusB antitermination factor [Desulfurobacterium thermolithotrophum
           DSM 11699]
          Length = 140

 Score = 63.9 bits (154), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 53/165 (32%), Positives = 79/165 (47%), Gaps = 34/165 (20%)

Query: 1   MTIQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADT----ELD 56
           MT +D KK          AR  A   +YQ D+ G S  EI      + +  D     E+ 
Sbjct: 1   MTNRDKKK----------AREHAYLMMYQYDLGGLSPEEI-----AFNYWEDNKESEEIK 45

Query: 57  VESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELI 116
             + YL      F+  +  +    ++ID+ IS  L + W  SRL  +  SILR    E+ 
Sbjct: 46  QMATYL------FKKTVENL----KNIDIEISRHLKKGWLISRLMPMDRSILRVATYEIS 95

Query: 117 ECHSVPVEVIISEYVCIAHDFFYGDE---PKFINAVLDKVSRKEE 158
                P+E +I++ V  A   FYG++   PKFINA+LDKV++ +E
Sbjct: 96  NESFSPIEAVINDAVDAAK--FYGEDEKSPKFINAILDKVAKNKE 138


>gi|253682288|ref|ZP_04863085.1| transcription antitermination factor NusB [Clostridium botulinum D
           str. 1873]
 gi|253562000|gb|EES91452.1| transcription antitermination factor NusB [Clostridium botulinum D
           str. 1873]
          Length = 135

 Score = 63.9 bits (154), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 45/137 (32%), Positives = 67/137 (48%), Gaps = 11/137 (8%)

Query: 14  HRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVII 73
           +RR  +R  A++ L+++ I      EII     ++   DT L        VD E+   II
Sbjct: 2   NRRK-SREIAMKLLFEMSINKEELKEII---HNFKENTDTSLK------DVDFEYINKII 51

Query: 74  HGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCI 133
            GV D  + ID  I   LT KW  +RL  I  +ILR    E+I    +P +V ++E + +
Sbjct: 52  QGVQDNIETIDSKIEENLT-KWKLNRLSKIDLTILRISTYEIIFVEDIPEKVAVNEGIEL 110

Query: 134 AHDFFYGDEPKFINAVL 150
           A  +   + P FIN VL
Sbjct: 111 AKKYSAENSPAFINGVL 127


>gi|292492483|ref|YP_003527922.1| transcription antitermination factor NusB [Nitrosococcus halophilus
           Nc4]
 gi|291581078|gb|ADE15535.1| transcription antitermination factor NusB [Nitrosococcus halophilus
           Nc4]
          Length = 150

 Score = 63.9 bits (154), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 41/148 (27%), Positives = 72/148 (48%), Gaps = 20/148 (13%)

Query: 12  LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLH---VDLEW 68
           +S+ R  AR AA+Q LYQ  + G     I               DV  ++     +D  +
Sbjct: 1   MSNNRSKARAAALQGLYQWQLTGQDVDTI---------------DVGFIFQGTRGIDQAY 45

Query: 69  FRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIIS 128
           F+ ++ GV  ++Q +D  +   L      + +D + C+ILR G  EL+    +P  V+++
Sbjct: 46  FQELLQGVPQQQQALDECLGPFLDR--PINEVDPVECTILRIGAFELLFRSDIPYRVVLN 103

Query: 129 EYVCIAHDFFYGDEPKFINAVLDKVSRK 156
           E + +A  F      +++N +LDKV+RK
Sbjct: 104 EAIELAKRFGAEHGHRYVNGILDKVARK 131


>gi|170760171|ref|YP_001787214.1| transcription antitermination protein NusB [Clostridium botulinum
           A3 str. Loch Maree]
 gi|238688744|sp|B1KT54|NUSB_CLOBM RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|169407160|gb|ACA55571.1| N utilization substance protein B [Clostridium botulinum A3 str.
           Loch Maree]
          Length = 141

 Score = 63.9 bits (154), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 44/139 (31%), Positives = 67/139 (48%), Gaps = 2/139 (1%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLH-VDLEWFRVIIH 74
           R  +R  A++ L+Q  + G +  E +   +  R   D E D ESV L  VD+++ + II 
Sbjct: 3   RRKSREVAMRLLFQTTLNGENLEEALENLKDVRESEDKEKDYESVDLKDVDIDYVKRIIK 62

Query: 75  GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134
           G+   K+ ID  I   L + W   RL  +  SILR    EL     +P  V ++E + +A
Sbjct: 63  GIEKNKEEIDGKIKGNL-KNWKIERLSKVDLSILRLCTYELKFEEDIPKRVSVNEAIELA 121

Query: 135 HDFFYGDEPKFINAVLDKV 153
             +       FIN VL K+
Sbjct: 122 KKYSGEKSATFINGVLGKM 140


>gi|42520134|ref|NP_966049.1| N utilization substance protein B, putative [Wolbachia endosymbiont
           of Drosophila melanogaster]
 gi|58698971|ref|ZP_00373826.1| transcription antitermination factor NusB [Wolbachia endosymbiont
           of Drosophila ananassae]
 gi|225630058|ref|YP_002726849.1| N utilization substance protein B, putative [Wolbachia sp. wRi]
 gi|42409871|gb|AAS13983.1| N utilization substance protein B, putative [Wolbachia endosymbiont
           of Drosophila melanogaster]
 gi|58534511|gb|EAL58655.1| transcription antitermination factor NusB [Wolbachia endosymbiont
           of Drosophila ananassae]
 gi|225592039|gb|ACN95058.1| N utilization substance protein B, putative [Wolbachia sp. wRi]
          Length = 160

 Score = 63.9 bits (154), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 50/158 (31%), Positives = 73/158 (46%), Gaps = 27/158 (17%)

Query: 9   DLKLSHRRGIARLAAVQALYQIDIIG----------CSTTEIISEYETYRFCADTELDVE 58
           D K   +R  AR  AVQ  Y    +G          C   + I++ +    C + E    
Sbjct: 7   DKKWRIKRSTARFLAVQIAYSNIFVGYNKSTFKLENCELKDYINKLKDIFECEEFE---- 62

Query: 59  SVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIEC 118
               H   ++   +++ V+   +  D +I S L   WS SRL++I  SILR  + EL  C
Sbjct: 63  ----H---QFLENLLYKVIKSSEEYDKIIESYLHPSWSLSRLNLISLSILRVAICELANC 115

Query: 119 HSVPVEVIISEYVCIAHDFFYGDEPK---FINAVLDKV 153
            + PV V+I+EY  IA D    D+P    FIN +LDK 
Sbjct: 116 DT-PVPVVINEYTNIASDLL--DKPSEIGFINGLLDKA 150


>gi|212634192|ref|YP_002310717.1| transcription antitermination protein NusB [Shewanella
           piezotolerans WP3]
 gi|226738906|sp|B8CJN3|NUSB_SHEPW RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|212555676|gb|ACJ28130.1| Antitermination protein NusB [Shewanella piezotolerans WP3]
          Length = 135

 Score = 63.9 bits (154), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 46/144 (31%), Positives = 73/144 (50%), Gaps = 14/144 (9%)

Query: 10  LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF 69
           +K S RR   RLA VQA+Y   + G +  ++  E+ T       E +V+ V    D+ +F
Sbjct: 1   MKPSERRKARRLA-VQAIYSWQLSGNNIADVEHEFLT-------EQNVDGV----DIAYF 48

Query: 70  RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISE 129
           R ++ GV  +K  +D LI+  L        +D +  +I+R    EL     VP +V I+E
Sbjct: 49  RELLGGVATKKSQLDELITPFLVR--PMDEVDPVEKAIVRLAAYELTFRKDVPYKVAINE 106

Query: 130 YVCIAHDFFYGDEPKFINAVLDKV 153
            + +A  F   D  KF+N +LDK+
Sbjct: 107 AIELAKAFGAEDGHKFVNGILDKL 130


>gi|90410900|ref|ZP_01218914.1| transcription antitermination protein NusB [Photobacterium
           profundum 3TCK]
 gi|90328113|gb|EAS44424.1| transcription antitermination protein NusB [Photobacterium
           profundum 3TCK]
          Length = 155

 Score = 63.5 bits (153), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 43/149 (28%), Positives = 76/149 (51%), Gaps = 6/149 (4%)

Query: 9   DLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYL---HVD 65
           ++K + RR  AR  A+QA+Y   I   +  EI  ++ +     + E   ++  L   H D
Sbjct: 4   NVKPAARRN-ARHFAIQAIYSWQITKGNVAEIEQQFLSDDKFEEEEHQADAPSLAAPHTD 62

Query: 66  LEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEV 125
           L +F  +++GV+   Q +D  +   L+       LD +  ++LR  + E+ +   VP +V
Sbjct: 63  LNYFHDLLNGVVQNHQELDSKMRPYLSR--PLQDLDQMELALLRLAMYEMTKRDDVPYKV 120

Query: 126 IISEYVCIAHDFFYGDEPKFINAVLDKVS 154
           +I+E + +A  F   D  KF+N VLDK +
Sbjct: 121 VINEAIELAKLFGAEDSHKFVNGVLDKAA 149


>gi|149194728|ref|ZP_01871823.1| N utilization substance protein B [Caminibacter mediatlanticus
           TB-2]
 gi|149135151|gb|EDM23632.1| N utilization substance protein B [Caminibacter mediatlanticus
           TB-2]
          Length = 136

 Score = 63.5 bits (153), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 43/137 (31%), Positives = 71/137 (51%), Gaps = 13/137 (9%)

Query: 19  ARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMD 78
           AR A +Q LY  ++      + I++++        EL  E        E+ + +++GV++
Sbjct: 7   AREAVIQTLYAKEL---GNDDAINQFD--------ELLKERKIKGQKAEFAKKLLNGVLE 55

Query: 79  RKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFF 138
               ID +I + L + WSF RLD +   ILR G+ E I+    P +++I E V IA +F 
Sbjct: 56  HINEIDEIIKNHLID-WSFDRLDKVDKQILRTGIYE-IKYTDTPYQIVIDEAVKIAKNFS 113

Query: 139 YGDEPKFINAVLDKVSR 155
                 FIN +LDKV++
Sbjct: 114 EDKSKNFINGILDKVAK 130


>gi|222528993|ref|YP_002572875.1| NusB antitermination factor [Caldicellulosiruptor bescii DSM 6725]
 gi|222455840|gb|ACM60102.1| NusB antitermination factor [Caldicellulosiruptor bescii DSM 6725]
          Length = 134

 Score = 63.5 bits (153), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 39/127 (30%), Positives = 67/127 (52%), Gaps = 7/127 (5%)

Query: 36  STTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKW 95
           +T +II  Y+ +R     EL+ +  +  +D ++   ++ GV+  +Q ID +I    ++ W
Sbjct: 12  NTQDIIEFYKKFR-----ELNQDEDFKDIDEKYLERLLKGVIQNQQKIDNIIEKY-SKDW 65

Query: 96  SFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSR 155
             SRL M+   ++R  V EL+    VPV V I E V +A  F     P F+N +L +++ 
Sbjct: 66  PLSRLPMVELELMRIAVYELLFEEEVPVSVAIDEAVDMASIFGIEKAPSFVNGILGRIA- 124

Query: 156 KEEIKRS 162
             E+KR 
Sbjct: 125 ANEVKRG 131


>gi|257063533|ref|YP_003143205.1| transcription antitermination factor NusB [Slackia
           heliotrinireducens DSM 20476]
 gi|256791186|gb|ACV21856.1| transcription antitermination factor NusB [Slackia
           heliotrinireducens DSM 20476]
          Length = 183

 Score = 63.5 bits (153), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 41/140 (29%), Positives = 71/140 (50%), Gaps = 14/140 (10%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           R + R AA+Q LY+ DI+G    +++ E           +  E   L+   ++ R ++ G
Sbjct: 7   RTLGRRAALQVLYESDILGTPVDKVVDEG----------VVPEEAALN---DYARRLLLG 53

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
           V      ID  IS   ++ W+  R+ ++  ++LR  V E+     VPV V I+E V +A 
Sbjct: 54  VASHITDIDRQISKS-SKNWAIDRMPLVDRALLRITVFEMQHVDEVPVAVSINEAVELAK 112

Query: 136 DFFYGDEPKFINAVLDKVSR 155
           DF   D  +F+N +L +++R
Sbjct: 113 DFGGDDTYRFVNGILGRIAR 132


>gi|24213164|ref|NP_710645.1| transcription antitermination protein NusB [Leptospira interrogans
           serovar Lai str. 56601]
 gi|32171656|sp|Q8F8T8|NUSB_LEPIN RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|61214188|sp|Q72V97|NUSB_LEPIC RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|24193877|gb|AAN47663.1| transcription antitermination protein NusB [Leptospira interrogans
           serovar Lai str. 56601]
          Length = 138

 Score = 63.5 bits (153), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 47/152 (30%), Positives = 78/152 (51%), Gaps = 14/152 (9%)

Query: 12  LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71
           +S RR  +R  AV ALYQ+++      E++ +++ Y    D + + E     V       
Sbjct: 1   MSARR-TSREIAVMALYQLELTQPPLKEVL-KFKWY----DKKTEPEERDFAVS------ 48

Query: 72  IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
           I++GV+  ++ ID LI    ++ W FSR+ ++  +ILR  +  L+    VP  V I E V
Sbjct: 49  IVNGVVKNQEQIDTLIKKY-SKNWDFSRISIVNKAILRLSIYALLYTWEVPKNVTIDEAV 107

Query: 132 CIAHDFFYGDEPKFINAVLDKVSRKEEIKRSG 163
            +  +F   +  +F+N VLD +  K EIK  G
Sbjct: 108 ELTKEFESEESARFVNGVLDAI-LKNEIKSDG 138


>gi|87121731|ref|ZP_01077618.1| NusB protein [Marinomonas sp. MED121]
 gi|86162982|gb|EAQ64260.1| NusB protein [Marinomonas sp. MED121]
          Length = 167

 Score = 63.5 bits (153), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 48/150 (32%), Positives = 71/150 (47%), Gaps = 16/150 (10%)

Query: 13  SHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVI 72
           S  R  AR  A+QA+YQ  +      EI ++     F  D +L         D  +FR +
Sbjct: 24  SQLRSAARSFALQAVYQWQMNHAPVNEIEAQ-----FAVDHDLGT------CDKAYFREL 72

Query: 73  IHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVC 132
           + GV  + + +D L    L      + LD I  + LR G  EL E   VP  V I+E V 
Sbjct: 73  LQGVTAKAKSLDDLFEELLDR--PLAELDPIELATLRIGSYELAERLDVPYRVAINESVE 130

Query: 133 IAHDFFYGDEPKFINAVLDKVS---RKEEI 159
           +A  F   +  K++N +LDK++   R+EEI
Sbjct: 131 LAKSFGASESHKYVNGILDKLAQRVRREEI 160


>gi|146308867|ref|YP_001189332.1| transcription antitermination protein NusB [Pseudomonas mendocina
           ymp]
 gi|145577068|gb|ABP86600.1| NusB antitermination factor [Pseudomonas mendocina ymp]
          Length = 159

 Score = 63.5 bits (153), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 43/138 (31%), Positives = 67/138 (48%), Gaps = 13/138 (9%)

Query: 19  ARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMD 78
           AR  A+QALY   I G    EI +++            V++ +  VD  +F  I+HGV  
Sbjct: 24  ARTLAMQALYSWHIAGQPLNEIEAQFR-----------VDNDFSKVDGAYFHEILHGVPR 72

Query: 79  RKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFF 138
           +K  +D   +  L        +D +  +ILR    EL     VP +V+I+E + +A  F 
Sbjct: 73  QKTELDEAFTPLLDR--PLEEIDPVELAILRLSTYELKNRVDVPYKVVINEGIELAKVFG 130

Query: 139 YGDEPKFINAVLDKVSRK 156
             D  KF+N +LDK++ K
Sbjct: 131 ATDGHKFVNGILDKLAPK 148


>gi|331269441|ref|YP_004395933.1| transcription antitermination factor NusB [Clostridium botulinum
           BKT015925]
 gi|329125991|gb|AEB75936.1| transcription antitermination factor NusB [Clostridium botulinum
           BKT015925]
          Length = 135

 Score = 63.5 bits (153), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 43/137 (31%), Positives = 70/137 (51%), Gaps = 11/137 (8%)

Query: 14  HRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVII 73
           +RR  +R  A++ L+++ I      EII     + F  +T+ +++ V    D E+   II
Sbjct: 2   NRRK-SREIAMKLLFEMSINKEELKEII-----HNFKENTDTNLKDV----DFEYINKII 51

Query: 74  HGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCI 133
            GV D  + ID  I   LT KW  +RL  +  +ILR    E++    VP +V ++E + +
Sbjct: 52  QGVQDNIEDIDSKIEENLT-KWKLNRLSKMDLTILRISTYEIMFMEDVPEKVAVNEGIEL 110

Query: 134 AHDFFYGDEPKFINAVL 150
           A  +   + P FIN VL
Sbjct: 111 AKKYSAENSPAFINGVL 127


>gi|330830919|ref|YP_004393871.1| N utilization substance protein B [Aeromonas veronii B565]
 gi|328806055|gb|AEB51254.1| N utilization substance protein B [Aeromonas veronii B565]
          Length = 137

 Score = 63.5 bits (153), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 47/144 (32%), Positives = 70/144 (48%), Gaps = 14/144 (9%)

Query: 10  LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF 69
           +K S RR  AR  A QA+YQ  +   +  +I    E ++   DT+         VDL +F
Sbjct: 1   MKPSERRK-ARHCATQAIYQWQMTKANVGDI---EEQFKIDQDTK--------GVDLNYF 48

Query: 70  RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISE 129
           R ++ GV      +D + +  L+       +DM+  +ILR    EL     VP  V+I+E
Sbjct: 49  RDLLFGVALHCSELDKVFAPFLSR--PLEEVDMVDKAILRLATYELTRRDDVPPRVVINE 106

Query: 130 YVCIAHDFFYGDEPKFINAVLDKV 153
            + +A  F   D  KF+N VLDKV
Sbjct: 107 AIELAKAFAADDSHKFVNGVLDKV 130


>gi|145298021|ref|YP_001140862.1| antitermination protein NusB [Aeromonas salmonicida subsp.
           salmonicida A449]
 gi|254772606|sp|A4SJP2|NUSB_AERS4 RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|142850793|gb|ABO89114.1| Antitermination protein NusB [Aeromonas salmonicida subsp.
           salmonicida A449]
          Length = 137

 Score = 63.5 bits (153), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 47/144 (32%), Positives = 70/144 (48%), Gaps = 14/144 (9%)

Query: 10  LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF 69
           +K S RR  AR  A QA+YQ  +   +  +I    E ++   DT+         VDL +F
Sbjct: 1   MKPSERRK-ARHCATQAIYQWQMTRANVGDI---EEQFKIDQDTK--------GVDLNYF 48

Query: 70  RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISE 129
           R ++ GV      +D + +  L+       +DM+  +ILR    EL     VP  V+I+E
Sbjct: 49  RDLLFGVALHCNELDKVFAPFLSR--PLEEVDMVDKAILRLATYELTRRDDVPPRVVINE 106

Query: 130 YVCIAHDFFYGDEPKFINAVLDKV 153
            + +A  F   D  KF+N VLDKV
Sbjct: 107 AIELAKAFAADDSHKFVNGVLDKV 130


>gi|306807668|ref|ZP_07444336.1| putative transcription antitermination factor NusB [Mycobacterium
           tuberculosis SUMu007]
 gi|308345910|gb|EFP34761.1| putative transcription antitermination factor NusB [Mycobacterium
           tuberculosis SUMu007]
          Length = 232

 Score = 63.2 bits (152), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 37/127 (29%), Positives = 64/127 (50%), Gaps = 9/127 (7%)

Query: 27  LYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLL 86
           L++ ++ G S  E++   +T    A+ + D+  ++      +   +  GV +   HID L
Sbjct: 4   LFEAEVRGISAAEVV---DTRAALAEAKPDIARLH-----PYTAAVARGVSEHAAHIDDL 55

Query: 87  ISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFI 146
           I++ L   W+  RL  +  +ILR  V EL+    VP  V++ E V +A +    D P F+
Sbjct: 56  ITAHL-RGWTLDRLPAVDRAILRVSVWELLHAADVPEPVVVDEAVQLAKELSTDDSPGFV 114

Query: 147 NAVLDKV 153
           N VL +V
Sbjct: 115 NGVLGQV 121


>gi|77919050|ref|YP_356865.1| transcription antitermination factor NusB [Pelobacter carbinolicus
           DSM 2380]
 gi|119390793|sp|Q3A4L2|NUSB_PELCD RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|77545133|gb|ABA88695.1| NusB antitermination factor [Pelobacter carbinolicus DSM 2380]
          Length = 156

 Score = 63.2 bits (152), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 45/148 (30%), Positives = 70/148 (47%), Gaps = 7/148 (4%)

Query: 13  SHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADT-----ELDVESVYLHVDLE 67
           S  R   R  A++ +Y  D  G     + + +  +RF  D      E   ++V   V  E
Sbjct: 3   SGMRRTGRELAIKIIYSFDGTGSVEALLATFWSNFRFRDDVLGEPLEDSSQAVAEPVR-E 61

Query: 68  WFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVII 127
           +   ++ GV +  + ID LI    T  WS  R+  +  +ILR    EL+    VPV VII
Sbjct: 62  FAEDLVRGVAENLEKIDGLIGEFST-NWSLERMARVDLAILRMATYELLGHLDVPVSVII 120

Query: 128 SEYVCIAHDFFYGDEPKFINAVLDKVSR 155
           +E V I   +   + P F+N +LD++SR
Sbjct: 121 NEAVEIGKRYGTKETPSFVNGILDRISR 148


>gi|117620704|ref|YP_857817.1| transcription antitermination factor NusB [Aeromonas hydrophila
           subsp. hydrophila ATCC 7966]
 gi|254772605|sp|A0KNG6|NUSB_AERHH RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|117562111|gb|ABK39059.1| transcription antitermination factor NusB [Aeromonas hydrophila
           subsp. hydrophila ATCC 7966]
          Length = 137

 Score = 63.2 bits (152), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 47/144 (32%), Positives = 69/144 (47%), Gaps = 14/144 (9%)

Query: 10  LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF 69
           +K S RR  AR  A QA+YQ  +   +  +I    E ++   DT+         VDL +F
Sbjct: 1   MKPSERRK-ARHCATQAIYQWQMTKANVGDI---EEQFKIDQDTK--------GVDLNYF 48

Query: 70  RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISE 129
           R ++ GV      +D + +  L+       +DM+  +ILR    EL     VP  V I+E
Sbjct: 49  RDLLFGVALHCNELDKVFAPFLSR--PLEEVDMVDKAILRLATYELTRRDDVPPRVAINE 106

Query: 130 YVCIAHDFFYGDEPKFINAVLDKV 153
            + +A  F   D  KF+N VLDKV
Sbjct: 107 AIELAKSFAADDSHKFVNGVLDKV 130


>gi|168186196|ref|ZP_02620831.1| transcription antitermination factor NusB [Clostridium botulinum C
           str. Eklund]
 gi|169295703|gb|EDS77836.1| transcription antitermination factor NusB [Clostridium botulinum C
           str. Eklund]
          Length = 133

 Score = 62.8 bits (151), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 40/142 (28%), Positives = 73/142 (51%), Gaps = 11/142 (7%)

Query: 14  HRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVII 73
           +RR  +R  A++ L+++ I     +EI+       F  +T+ ++E    +VD  +   I+
Sbjct: 2   NRRK-SREVAMKLLFEMSINKEEFSEILK-----NFKENTDTNME----NVDFVYINKIV 51

Query: 74  HGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCI 133
           +G+   K+ ID  I   LT KW  +RL  I  +ILR    E++    +P +V ++E + +
Sbjct: 52  NGIEQNKEDIDKRIEENLT-KWKLNRLSKIDLTILRISTYEIMFMEDIPNKVAVNEAIEL 110

Query: 134 AHDFFYGDEPKFINAVLDKVSR 155
           A  +   + P F+N VL  + R
Sbjct: 111 AKKYSADNSPAFVNGVLGNMIR 132


>gi|77361286|ref|YP_340861.1| transcription termination factor [Pseudoalteromonas haloplanktis
           TAC125]
 gi|119390799|sp|Q3II29|NUSB_PSEHT RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|76876197|emb|CAI87419.1| transcription termination factor [Pseudoalteromonas haloplanktis
           TAC125]
          Length = 136

 Score = 62.8 bits (151), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 45/144 (31%), Positives = 73/144 (50%), Gaps = 14/144 (9%)

Query: 10  LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF 69
           +K + RR  AR+ A+QA+Y   + G +  +I           + ++ +E+    +D+E+F
Sbjct: 1   MKPAARRK-ARILALQAIYSWQLSGNAIADI-----------EQQMLIENDVTKIDVEYF 48

Query: 70  RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISE 129
           + +  GV    + +D  +S  LT    F  LDM+  +ILR    EL     VP +V I+E
Sbjct: 49  KDLASGVAVNYKQLDEAVSPHLTR--PFDELDMVERAILRLSSYELKFREDVPYKVAINE 106

Query: 130 YVCIAHDFFYGDEPKFINAVLDKV 153
            + +A  F   D  KF+N VLDK 
Sbjct: 107 SIELAKMFGAEDSHKFVNGVLDKA 130


>gi|51892987|ref|YP_075678.1| transcription termination factor [Symbiobacterium thermophilum IAM
           14863]
 gi|81610502|sp|Q67NA9|NUSB_SYMTH RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|51856676|dbj|BAD40834.1| transcription termination factor [Symbiobacterium thermophilum IAM
           14863]
          Length = 153

 Score = 62.8 bits (151), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 44/147 (29%), Positives = 70/147 (47%), Gaps = 12/147 (8%)

Query: 12  LSHRRGIARLAAVQALYQIDIIGCSTTEIISE---YETYRFCADTELDVESVYLHVDLEW 68
           +S R+  AR  A+QAL+Q+DI G      +++    ET    A   L+ ES       E+
Sbjct: 1   MSRRK--ARELALQALFQMDIAGTDPDTAVAQALTRETEPDWAPDRLEEESA------EF 52

Query: 69  FRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIIS 128
            R ++ G    ++  D LI+      W   R+  +  +ILR  V E++    VP  V ++
Sbjct: 53  ARRLVRGAWQHREESDRLIAQ-YARGWRVERMAAVDRAILRMAVYEIVHSEDVPDSVAVA 111

Query: 129 EYVCIAHDFFYGDEPKFINAVLDKVSR 155
           E V +A  F   D  +F+N +L  V R
Sbjct: 112 EAVELAKTFSTADSSRFVNGILGSVIR 138


>gi|254360609|ref|ZP_04976758.1| N utilization substance B [Mannheimia haemolytica PHL213]
 gi|261493373|ref|ZP_05989899.1| N utilization substance B [Mannheimia haemolytica serotype A2 str.
           BOVINE]
 gi|261496639|ref|ZP_05993019.1| N utilization substance B [Mannheimia haemolytica serotype A2 str.
           OVINE]
 gi|153091149|gb|EDN73154.1| N utilization substance B [Mannheimia haemolytica PHL213]
 gi|261307842|gb|EEY09165.1| N utilization substance B [Mannheimia haemolytica serotype A2 str.
           OVINE]
 gi|261311017|gb|EEY12194.1| N utilization substance B [Mannheimia haemolytica serotype A2 str.
           BOVINE]
          Length = 137

 Score = 62.8 bits (151), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 50/145 (34%), Positives = 72/145 (49%), Gaps = 14/145 (9%)

Query: 10  LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF 69
           +K+S RR  AR  AVQA+Y   I   +  E+        F  D ++        VD+ +F
Sbjct: 1   MKISPRRR-ARECAVQAIYSWYISQNTVEEV-----ELAFVTDQDMK------GVDMPYF 48

Query: 70  RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISE 129
           R +  GV+D  + ID  +   L  K S   +D I  SILR    EL   H VP  V+I+E
Sbjct: 49  RKLFRGVVDNVEAIDEALRPYLDRKES--DVDPIERSILRLSTYELKFEHDVPFRVVINE 106

Query: 130 YVCIAHDFFYGDEPKFINAVLDKVS 154
            + +A  F   D  K+IN +LDK++
Sbjct: 107 GIEVAKVFGSDDSHKYINGILDKLA 131


>gi|56964231|ref|YP_175962.1| transcription antitermination protein NusB [Bacillus clausii
           KSM-K16]
 gi|81600830|sp|Q5WF59|NUSB_BACSK RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|56910474|dbj|BAD65001.1| N utilization substance protein NusB [Bacillus clausii KSM-K16]
          Length = 133

 Score = 62.8 bits (151), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 40/136 (29%), Positives = 68/136 (50%), Gaps = 15/136 (11%)

Query: 15  RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74
            R +ARL AVQ LYQ+ +I  +  + I          +T  D E        E++  ++H
Sbjct: 2   NRRVARLRAVQTLYQLTLIDINVDKAIE---------NTLNDEEEPS-----EFYNTLVH 47

Query: 75  GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134
           G ++ +  ID  +S  L + ++  RL  +  +I R G+ E++    +PV V ++E + +A
Sbjct: 48  GTLEHQDEIDGYLSENL-KGYTLDRLGHVDRAIARMGLFEMLYLDDIPVNVTLNEAIELA 106

Query: 135 HDFFYGDEPKFINAVL 150
             F   D  +FIN VL
Sbjct: 107 KAFGGTDAGRFINGVL 122


>gi|296140288|ref|YP_003647531.1| NusB antitermination factor [Tsukamurella paurometabola DSM 20162]
 gi|296028422|gb|ADG79192.1| NusB antitermination factor [Tsukamurella paurometabola DSM 20162]
          Length = 165

 Score = 62.8 bits (151), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 46/154 (29%), Positives = 73/154 (47%), Gaps = 8/154 (5%)

Query: 1   MTIQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESV 60
           M  Q   K  K S  R  AR  AV  L++++  G   T++       R  A  +  V  V
Sbjct: 1   MPDQSENKRPKKSGARHRARKRAVDLLFEVEARGV--TDVDGLLAERRTLAADDASVPPV 58

Query: 61  YLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHS 120
                 E+   ++ GV   ++ +D +I+S LT  W+ +RL  +  +ILR  V EL     
Sbjct: 59  S-----EYTAQLVTGVDVDREQLDSVITSHLT-GWTLARLPAVDRAILRVAVWELFNAPD 112

Query: 121 VPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVS 154
           VP  V++ E V +A +    + P ++N VL KV+
Sbjct: 113 VPPAVVVDEAVELAKELSTDESPSYLNGVLGKVA 146


>gi|323702771|ref|ZP_08114431.1| NusB antitermination factor [Desulfotomaculum nigrificans DSM 574]
 gi|323532288|gb|EGB22167.1| NusB antitermination factor [Desulfotomaculum nigrificans DSM 574]
          Length = 144

 Score = 62.8 bits (151), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 41/135 (30%), Positives = 70/135 (51%), Gaps = 12/135 (8%)

Query: 19  ARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMD 78
           AR  A+QAL+QID+ G    E   +     F A ++          +LE+ R ++ G ++
Sbjct: 6   ARETALQALFQIDV-GKIEPEFALKNTAEEFGAGSQ----------ELEFARQLVTGTLE 54

Query: 79  RKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFF 138
               ID +IS  ++++W  SR+  +  +I+R  + E++    +P  V I+E V +A  F 
Sbjct: 55  HINEIDEIISR-VSKEWQLSRMANVDRNIMRLALYEMMFRDDIPGSVSINEAVELAKAFG 113

Query: 139 YGDEPKFINAVLDKV 153
             D  KF+N +L KV
Sbjct: 114 GADSGKFVNGILGKV 128


>gi|320536419|ref|ZP_08036456.1| transcription antitermination factor NusB [Treponema phagedenis
           F0421]
 gi|320146729|gb|EFW38308.1| transcription antitermination factor NusB [Treponema phagedenis
           F0421]
          Length = 136

 Score = 62.8 bits (151), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 43/146 (29%), Positives = 73/146 (50%), Gaps = 12/146 (8%)

Query: 10  LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF 69
           +++  RRG  R+ A QAL+  D  G S+ E + ++E +      E   E  +L       
Sbjct: 1   MQIGRRRG--RILAFQALFAWDF-GQSSPEELVQFEWFE---TKEPVSEEAFLFP----- 49

Query: 70  RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISE 129
           +++  G ++  + ID  I + L   W F RL+    +I+R GV  L+     P  ++I E
Sbjct: 50  KMLFLGTLEHLEEIDTHIKNNL-HNWDFDRLNKADKAIIRLGVYSLLFQKDTPSAIVIDE 108

Query: 130 YVCIAHDFFYGDEPKFINAVLDKVSR 155
            V +A  F   D  KF+NA+LD +++
Sbjct: 109 AVNLARSFGTDDSFKFVNAILDSIAK 134


>gi|23099336|ref|NP_692802.1| transcription antitermination protein NusB [Oceanobacillus
           iheyensis HTE831]
 gi|32171652|sp|Q8EQ42|NUSB_OCEIH RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|22777565|dbj|BAC13837.1| transcriptional terminator [Oceanobacillus iheyensis HTE831]
          Length = 126

 Score = 62.8 bits (151), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 50/140 (35%), Positives = 74/140 (52%), Gaps = 20/140 (14%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           R  AR  A Q L+Q+DI   + TE+    ET +     E +   V+L       R ++ G
Sbjct: 3   RHKAREKAFQVLFQLDI---NETELEEVMETLK-----EKERYDVFL-------RSLVEG 47

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
           V+  K  ID  IS+ L EKW+  R+  +  +ILR  +LE++    +P  V I+E + +AH
Sbjct: 48  VIQHKSVIDEKISTHL-EKWTIDRIASVERTILRMAILEIMYIDDIPQNVSINEAIELAH 106

Query: 136 DFFYGDEP--KFINAVLDKV 153
            F  GDE   KF+N VL K+
Sbjct: 107 TF--GDEQSGKFVNGVLSKI 124


>gi|240170738|ref|ZP_04749397.1| transcription antitermination protein NusB [Mycobacterium kansasii
           ATCC 12478]
          Length = 174

 Score = 62.4 bits (150), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 47/153 (30%), Positives = 71/153 (46%), Gaps = 12/153 (7%)

Query: 1   MTIQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESV 60
           M      K +K  H+   AR  AV  L++ +  G S  E++ E  T    A  E+     
Sbjct: 1   MPEGKPGKPVKGRHQ---ARKRAVDVLFEAEARGMSPLEVV-ESRTALAAAKPEV----A 52

Query: 61  YLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHS 120
            LH    +   +  GV +   HID LI++ L + W+  RL  +  +ILR  V EL+    
Sbjct: 53  PLH---PYTAAVARGVSEDAAHIDDLIAAHL-QGWTLDRLPAVDRAILRVSVWELLHADD 108

Query: 121 VPVEVIISEYVCIAHDFFYGDEPKFINAVLDKV 153
           VP  V + E V +A +    + P F+N VL +V
Sbjct: 109 VPEPVAVDEAVELAKELSTDESPGFVNGVLGQV 141


>gi|269103251|ref|ZP_06155948.1| transcription termination protein NusB [Photobacterium damselae
           subsp. damselae CIP 102761]
 gi|268163149|gb|EEZ41645.1| transcription termination protein NusB [Photobacterium damselae
           subsp. damselae CIP 102761]
          Length = 152

 Score = 62.4 bits (150), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 44/148 (29%), Positives = 73/148 (49%), Gaps = 6/148 (4%)

Query: 10  LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYL---HVDL 66
           +K + RR  AR  AVQA+Y   I      +I   + +     + E   E+  L   H D+
Sbjct: 1   MKPAARRN-ARQFAVQAIYSWQITQGDIADIEQHFLSGDKFEEEEYQAEAPVLAAPHTDV 59

Query: 67  EWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVI 126
            +FR +  GV+   Q +D  +   L+       LD +  ++LR  + E+++   VP +V+
Sbjct: 60  NYFRDLFTGVVLNHQDLDSKMRPYLSR--PLQDLDQMELALLRLAMYEMVKREDVPFKVV 117

Query: 127 ISEYVCIAHDFFYGDEPKFINAVLDKVS 154
           I+E + +A  F   D  KF+N VLDK +
Sbjct: 118 INEAIELAKLFGAEDSHKFVNGVLDKAA 145


>gi|212709167|ref|ZP_03317295.1| hypothetical protein PROVALCAL_00200 [Providencia alcalifaciens DSM
           30120]
 gi|212688079|gb|EEB47607.1| hypothetical protein PROVALCAL_00200 [Providencia alcalifaciens DSM
           30120]
          Length = 138

 Score = 62.4 bits (150), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 41/132 (31%), Positives = 65/132 (49%), Gaps = 13/132 (9%)

Query: 23  AVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQH 82
           AVQA+Y   + G    E+      Y F A+ ++        VD+ +FR +I G+ +    
Sbjct: 13  AVQAIYSWQLSGNPIAEV-----EYEFIAEQDMS------DVDVNYFRELISGIANNATK 61

Query: 83  IDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDE 142
           +D L+S  L+ +     L  +  +ILR  + EL     VP +V I+E + +A  F   D 
Sbjct: 62  LDQLMSPYLSRQ--LEELGQVEKAILRVAMYELSYRQDVPFKVAINEGIELAKVFGAEDS 119

Query: 143 PKFINAVLDKVS 154
            KF+N VLDK +
Sbjct: 120 HKFVNGVLDKAA 131


>gi|114332465|ref|YP_748687.1| NusB antitermination factor [Nitrosomonas eutropha C91]
 gi|122312909|sp|Q0AD60|NUSB_NITEC RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|114309479|gb|ABI60722.1| NusB antitermination factor [Nitrosomonas eutropha C91]
          Length = 167

 Score = 62.4 bits (150), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 38/141 (26%), Positives = 70/141 (49%), Gaps = 13/141 (9%)

Query: 14  HRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVII 73
           +RR ++R  A+Q +YQ  + G +  EI           D +L   + Y   D  +F  ++
Sbjct: 21  NRRRLSRELALQGIYQWRLAGGNAQEI-----------DLQLQQVNFYSKADGSYFSDLL 69

Query: 74  HGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCI 133
            GV++  + ++  I + L  +   + L  + CSIL  G  E++    +P   II+E + +
Sbjct: 70  QGVLEHSRDLEAQIQAYLDRQ--LAELSPVECSILLIGTYEMVHHPEIPCRAIINEAIEL 127

Query: 134 AHDFFYGDEPKFINAVLDKVS 154
           A  +   D  K++N VLDK++
Sbjct: 128 AKSYGGTDGHKYVNGVLDKLA 148


>gi|312877547|ref|ZP_07737507.1| NusB antitermination factor [Caldicellulosiruptor lactoaceticus 6A]
 gi|311795688|gb|EFR12057.1| NusB antitermination factor [Caldicellulosiruptor lactoaceticus 6A]
          Length = 134

 Score = 62.4 bits (150), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 39/127 (30%), Positives = 65/127 (51%), Gaps = 7/127 (5%)

Query: 36  STTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKW 95
              +I+  Y+ +R     EL+ +  +  +D ++   ++ GV+  +Q ID LI    ++ W
Sbjct: 12  GQQDIMEFYKKFR-----ELNQDEDFKDIDEKYLERLLKGVIQNQQRIDNLIEKY-SKDW 65

Query: 96  SFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSR 155
             SRL M+   +LR  V EL+    VPV V I E V +A  F     P F+N +L +++ 
Sbjct: 66  PLSRLPMVELELLRIAVYELLFEEDVPVSVAIDEAVDMASIFGIEKAPSFVNGILGRIA- 124

Query: 156 KEEIKRS 162
             E+KR 
Sbjct: 125 ANEVKRG 131


>gi|148264233|ref|YP_001230939.1| NusB antitermination factor [Geobacter uraniireducens Rf4]
 gi|189035890|sp|A5G3J8|NUSB_GEOUR RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|146397733|gb|ABQ26366.1| NusB antitermination factor [Geobacter uraniireducens Rf4]
          Length = 145

 Score = 62.4 bits (150), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 43/144 (29%), Positives = 70/144 (48%), Gaps = 7/144 (4%)

Query: 12  LSHRRGIARLAAVQALYQIDIIGCSTTEIISE-YETYRFCADTELDVESVYLHVDLEWFR 70
           +S RR   R  A+QALY  D+     T ++    E +   ++  +D  S       E   
Sbjct: 1   MSSRRE-GRELALQALYSSDVEVMDGTTVLKRIMENFGDGSEPAVDAHSRSFSFAAE--- 56

Query: 71  VIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEY 130
            +++GV+  +  ID  I    ++ WS SR+  +  +ILR  V EL     +P  V I+E 
Sbjct: 57  -LVNGVVANRAAIDQRIEEK-SKNWSISRMARVDLNILRLAVFELFYRPDIPKNVTINEA 114

Query: 131 VCIAHDFFYGDEPKFINAVLDKVS 154
           + +A  F   D P FIN +LD+++
Sbjct: 115 IEVAKKFGADDSPAFINGILDEIA 138


>gi|330721632|gb|EGG99649.1| Transcription termination protein NusB [gamma proteobacterium
           IMCC2047]
          Length = 153

 Score = 62.4 bits (150), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 51/153 (33%), Positives = 73/153 (47%), Gaps = 16/153 (10%)

Query: 4   QDNKKDLKLSH--RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVY 61
           Q   K+ +LS   RR   RLA +QALYQ ++   S  EI  E     F  D  +      
Sbjct: 6   QPKPKNKRLSPALRRNARRLA-MQALYQWELASSSLLEIERE-----FREDNNMQ----- 54

Query: 62  LHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSV 121
             VD ++F  ++H V   K  +D  I   L      S L  +  +ILR    EL++   V
Sbjct: 55  -KVDADYFTELLHRVPTLKTELDEQIKPLLDR--DISELTPVELTILRLSGYELLKRPDV 111

Query: 122 PVEVIISEYVCIAHDFFYGDEPKFINAVLDKVS 154
           P  VII+E V +A  F   D  K++N +LDK++
Sbjct: 112 PYRVIINEGVELAKTFGATDGHKYVNGILDKLA 144


>gi|330505151|ref|YP_004382020.1| transcription antitermination protein NusB [Pseudomonas mendocina
           NK-01]
 gi|328919437|gb|AEB60268.1| transcription antitermination protein NusB [Pseudomonas mendocina
           NK-01]
          Length = 159

 Score = 62.4 bits (150), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 42/136 (30%), Positives = 66/136 (48%), Gaps = 13/136 (9%)

Query: 19  ARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMD 78
           AR  A+QALY   I G    EI +++            V++ +  VD  +F  I+HGV  
Sbjct: 24  ARTLAMQALYSWHIAGQPLNEIEAQFR-----------VDNDFSKVDGAYFHEILHGVPR 72

Query: 79  RKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFF 138
           +K  +D   +  L        +D +  +ILR    EL     VP +V+I+E + +A  F 
Sbjct: 73  QKTELDGAFTPLLDR--PLEEIDPVELAILRLSTYELKNRVDVPYKVVINEGIELAKVFG 130

Query: 139 YGDEPKFINAVLDKVS 154
             D  KF+N +LDK++
Sbjct: 131 ATDGHKFVNGILDKLA 146


>gi|163941940|ref|YP_001646824.1| transcription antitermination protein NusB [Bacillus
           weihenstephanensis KBAB4]
 gi|229013400|ref|ZP_04170537.1| N utilization substance protein B [Bacillus mycoides DSM 2048]
 gi|229061872|ref|ZP_04199202.1| N utilization substance protein B [Bacillus cereus AH603]
 gi|229620056|sp|A9VGW4|NUSB_BACWK RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|163864137|gb|ABY45196.1| NusB antitermination factor [Bacillus weihenstephanensis KBAB4]
 gi|228717433|gb|EEL69101.1| N utilization substance protein B [Bacillus cereus AH603]
 gi|228747812|gb|EEL97678.1| N utilization substance protein B [Bacillus mycoides DSM 2048]
          Length = 130

 Score = 62.4 bits (150), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 45/140 (32%), Positives = 66/140 (47%), Gaps = 14/140 (10%)

Query: 15  RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74
           +R  AR  A+QALYQ+DI G        E E      +T  + E        E+   ++ 
Sbjct: 2   KRRTARERAMQALYQMDITG--------ELEPKVAVENTLDEGEETN-----EFLESLVV 48

Query: 75  GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134
           G +D K+ ID  I   L +KW   R+ ++  SILR  V E+     +P  V I+E + IA
Sbjct: 49  GFVDNKEEIDAAIRQNL-KKWKLERISIVDRSILRVAVCEMKYMEEIPHNVTINEAIEIA 107

Query: 135 HDFFYGDEPKFINAVLDKVS 154
             F   +  +FIN VL  + 
Sbjct: 108 KTFGDEESRRFINGVLSNIK 127


>gi|221310355|ref|ZP_03592202.1| transcription antitermination protein NusB [Bacillus subtilis
           subsp. subtilis str. 168]
 gi|221314679|ref|ZP_03596484.1| transcription antitermination protein NusB [Bacillus subtilis
           subsp. subtilis str. NCIB 3610]
 gi|221319602|ref|ZP_03600896.1| transcription antitermination protein NusB [Bacillus subtilis
           subsp. subtilis str. JH642]
 gi|221323878|ref|ZP_03605172.1| transcription antitermination protein NusB [Bacillus subtilis
           subsp. subtilis str. SMY]
 gi|255767541|ref|NP_390312.2| transcription antitermination protein NusB [Bacillus subtilis
           subsp. subtilis str. 168]
 gi|321311916|ref|YP_004204203.1| transcription antitermination protein NusB [Bacillus subtilis BSn5]
 gi|251757301|sp|P54520|NUSB_BACSU RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|225185169|emb|CAB14363.2| transcription termination factor NusB [Bacillus subtilis subsp.
           subtilis str. 168]
 gi|291484874|dbj|BAI85949.1| transcription antitermination protein NusB [Bacillus subtilis
           subsp. natto BEST195]
 gi|320018190|gb|ADV93176.1| transcription antitermination protein NusB [Bacillus subtilis BSn5]
          Length = 131

 Score = 62.4 bits (150), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 43/148 (29%), Positives = 70/148 (47%), Gaps = 18/148 (12%)

Query: 15  RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74
           +R  AR  A+QAL+QID+   +  E I             LD E         +F  ++H
Sbjct: 2   KRRTAREKALQALFQIDVSDIAVNEAIEHA----------LDEEKTD-----PFFEQLVH 46

Query: 75  GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134
           GV++ +  +D +IS  L   W   R+  +  +ILR    E+     +PV V ++E + +A
Sbjct: 47  GVLEHQDQLDEMISKHLV-NWKLDRIANVDRAILRLAAYEMAYAEDIPVNVSMNEAIELA 105

Query: 135 HDFFYGDEPKFINAVLDKVSRKEEIKRS 162
             F      KF+N VL  +  K +I++S
Sbjct: 106 KRFGDDKATKFVNGVLSNI--KSDIEQS 131


>gi|118443864|ref|YP_878051.1| transcription antitermination protein NusB [Clostridium novyi NT]
 gi|166215685|sp|A0Q099|NUSB_CLONN RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|118134320|gb|ABK61364.1| transcription antitermination factor NusB [Clostridium novyi NT]
          Length = 133

 Score = 62.4 bits (150), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 39/137 (28%), Positives = 71/137 (51%), Gaps = 11/137 (8%)

Query: 14  HRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVII 73
           +RR  +R  A++ L+++ I     +EI+       F  +T+ ++E    +VD  +   I+
Sbjct: 2   NRRK-SREVAMKLLFEMSINKEEFSEILK-----NFKENTDTNME----NVDFIYINKIV 51

Query: 74  HGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCI 133
           +G+   K+ ID  I   LT KW  +RL  I  +ILR    E++    +P +V ++E + +
Sbjct: 52  NGIEQNKEDIDKKIEENLT-KWKLNRLSKIDLTILRISTYEIMFMEDIPNKVAVNEAIEL 110

Query: 134 AHDFFYGDEPKFINAVL 150
           A  +   + P F+N VL
Sbjct: 111 AKKYSADNSPAFVNGVL 127


>gi|302338941|ref|YP_003804147.1| NusB antitermination factor [Spirochaeta smaragdinae DSM 11293]
 gi|301636126|gb|ADK81553.1| NusB antitermination factor [Spirochaeta smaragdinae DSM 11293]
          Length = 140

 Score = 62.0 bits (149), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 45/143 (31%), Positives = 69/143 (48%), Gaps = 8/143 (5%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           R  AR+ A QA+Y  +       E++ +++        +LD E+          R+++ G
Sbjct: 4   RRKARILAFQAIYSWEFHKPLLAELL-QFDWLEEERKAKLDTETWLFA------RLLVQG 56

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
            ++    ID  I + L E W FSRL  +  +ILR    EL+    VP  V I E V +A 
Sbjct: 57  TIENCDTIDHRIQNRL-EHWDFSRLSKVDLAILRLSTYELLFQQDVPASVAIDEAVDLAK 115

Query: 136 DFFYGDEPKFINAVLDKVSRKEE 158
           DF   D  +FIN VLD + ++ E
Sbjct: 116 DFGGDDSYRFINGVLDSIRKERE 138


>gi|154248795|ref|YP_001409620.1| transcription antitermination protein NusB [Fervidobacterium
           nodosum Rt17-B1]
 gi|171769316|sp|A7HJ80|NUSB_FERNB RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|154152731|gb|ABS59963.1| NusB antitermination factor [Fervidobacterium nodosum Rt17-B1]
          Length = 141

 Score = 62.0 bits (149), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 41/142 (28%), Positives = 69/142 (48%), Gaps = 13/142 (9%)

Query: 15  RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74
           +R + R   V+  +Q +       EI SE  T     D  +  +          F+  + 
Sbjct: 4   KRRVLREMVVKLFFQREFRHNEFEEIFSE--TLNKIRDNTIKAD----------FKRYVE 51

Query: 75  GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134
           GV      ID +IS+ L   WSF RL  +  ++LR G  ELI   ++P+EV I+E + IA
Sbjct: 52  GVFHNLSTIDNIISNHLI-NWSFDRLSYLERNVLRVGTYELIYEENIPIEVTINEMIEIA 110

Query: 135 HDFFYGDEPKFINAVLDKVSRK 156
             +   +  KF+N +LD+++++
Sbjct: 111 KKYGSEESGKFVNGILDRIAKE 132


>gi|304440279|ref|ZP_07400169.1| transcription antitermination factor NusB [Peptoniphilus duerdenii
           ATCC BAA-1640]
 gi|304371328|gb|EFM24944.1| transcription antitermination factor NusB [Peptoniphilus duerdenii
           ATCC BAA-1640]
          Length = 135

 Score = 62.0 bits (149), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 47/141 (33%), Positives = 72/141 (51%), Gaps = 13/141 (9%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           R +AR   ++ LYQ+DI    + E +  Y       +++L  + V      E+ R  I G
Sbjct: 3   RRVARRGLMKLLYQMDINEDYSDEALDFY-----FENSDLKEDEV------EFIREHISG 51

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
           ++D+ + ID +I S L E WS  R+  I   ILR  V EL    S    ++I+E V IA 
Sbjct: 52  MIDKFEEIDEIIKSNL-EGWSLERISNIDRQILRIAVYELY-FTSTASNIVINEAVEIAR 109

Query: 136 DFFYGDEPKFINAVLDKVSRK 156
           ++   + PKFIN +L  + RK
Sbjct: 110 EYSSNEAPKFINGILGTIFRK 130


>gi|88607519|ref|YP_505131.1| N utilization substance protein B [Anaplasma phagocytophilum HZ]
 gi|88598582|gb|ABD44052.1| N utilization substance protein B [Anaplasma phagocytophilum HZ]
          Length = 282

 Score = 62.0 bits (149), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 46/136 (33%), Positives = 72/136 (52%), Gaps = 8/136 (5%)

Query: 19  ARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLH-VDLEWFRVIIHGVM 77
           AR  AVQ  Y + + G  T   + +   +  C   E+    + LH VD +    I+  ++
Sbjct: 22  ARFLAVQGAYAM-MFGAYTASDLEDLLEH-LCEMQEV----LDLHRVDKKLLSKILGCMI 75

Query: 78  DRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDF 137
           ++   +D LIS  L EKWS  R++++  +++RAGV EL+ C      VII+EYV IA   
Sbjct: 76  EKCNEVDSLISVHLNEKWSMERINLVSLAVMRAGVCELL-CLKTSECVIINEYVGIASTV 134

Query: 138 FYGDEPKFINAVLDKV 153
               E  F+NA+L+K 
Sbjct: 135 LEKSEVNFVNAILNKA 150


>gi|330814127|ref|YP_004358366.1| antitermination protein NusB [Candidatus Pelagibacter sp. IMCC9063]
 gi|327487222|gb|AEA81627.1| antitermination protein NusB [Candidatus Pelagibacter sp. IMCC9063]
          Length = 125

 Score = 62.0 bits (149), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 36/144 (25%), Positives = 70/144 (48%), Gaps = 20/144 (13%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           +G +RL  +Q +Y+   I  S+ EI     +Y                  +   + + +G
Sbjct: 2   KGSSRLIVIQKIYEK--ISDSSHEIKFPKSSY------------------IRTVKKVFNG 41

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
             +++  +D ++S  L+   SF  LDMIL  IL+A + E++    +P +V++ EY+ +  
Sbjct: 42  FFEKEADLDQILSKNLSSNISFKNLDMILKIILKAAIFEVLYMPKIPFKVVVDEYLAVTE 101

Query: 136 DFFYGDEPKFINAVLDKVSRKEEI 159
            ++   +   +NAVLD V + E +
Sbjct: 102 MYYDSSQKGLVNAVLDSVFKSEHV 125


>gi|302872150|ref|YP_003840786.1| NusB antitermination factor [Caldicellulosiruptor obsidiansis OB47]
 gi|302575009|gb|ADL42800.1| NusB antitermination factor [Caldicellulosiruptor obsidiansis OB47]
          Length = 136

 Score = 62.0 bits (149), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 40/126 (31%), Positives = 67/126 (53%), Gaps = 7/126 (5%)

Query: 37  TTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWS 96
             +II  Y+ +R     EL+    +  VD ++   ++ GV+  +Q ID LI+   ++ W 
Sbjct: 13  QQDIIEFYKRFR-----ELNQNEDFKDVDEKYLEKLLKGVIQNQQIIDNLIAKY-SKDWP 66

Query: 97  FSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRK 156
            +RL M+   ++R  V EL+    VPV V I E V +A  F     P F+N +L +++ +
Sbjct: 67  LNRLPMVELELMRIAVYELLFEEDVPVSVAIDEAVDMASIFGIEKAPSFVNGILGRIA-E 125

Query: 157 EEIKRS 162
            E+KRS
Sbjct: 126 NEVKRS 131


>gi|126666701|ref|ZP_01737678.1| transcription antitermination protein NusB [Marinobacter sp. ELB17]
 gi|126628746|gb|EAZ99366.1| transcription antitermination protein NusB [Marinobacter sp. ELB17]
          Length = 166

 Score = 62.0 bits (149), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 42/138 (30%), Positives = 69/138 (50%), Gaps = 13/138 (9%)

Query: 19  ARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMD 78
           AR  A+Q LYQ      + + I +E     F  D ++        VDL +FR ++HG   
Sbjct: 33  ARGMAMQGLYQRHFSKSAISNIEAE-----FMVDNDMS------KVDLLYFRDLLHGTSR 81

Query: 79  RKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFF 138
            +  +D LI   L        +D +  +I+R G  EL     VP +V+I+E + +A  F 
Sbjct: 82  EQAELDRLIEPFLDR--PLQEVDPVELAIVRLGAYELKFRLDVPYKVVINEGIEMAKRFG 139

Query: 139 YGDEPKFINAVLDKVSRK 156
             +  +F+N++LDK+SR+
Sbjct: 140 GTEGHRFVNSILDKLSRR 157


>gi|302036739|ref|YP_003797061.1| transcription antitermination factor NusB [Candidatus Nitrospira
           defluvii]
 gi|190343154|gb|ACE75542.1| transcription antitermination protein [Candidatus Nitrospira
           defluvii]
 gi|300604803|emb|CBK41135.1| Transcription antitermination factor NusB [Candidatus Nitrospira
           defluvii]
          Length = 157

 Score = 62.0 bits (149), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 41/135 (30%), Positives = 65/135 (48%), Gaps = 13/135 (9%)

Query: 19  ARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMD 78
           AR  AVQ L+Q DI G +   +   +  Y    +  +  E             ++ GV  
Sbjct: 7   ARERAVQILFQYDIHGQAGPWLDDFWIQYPLAEELRVFAER------------LVAGVRA 54

Query: 79  RKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFF 138
            K+ +D LI +  T  W  SR+ +I  +ILR G  EL+    VP +V ++E + +A  F 
Sbjct: 55  NKKELDALIGTYAT-NWKVSRMPIIDRNILRMGCFELLHVPEVPAKVTLNEAIELAKSFG 113

Query: 139 YGDEPKFINAVLDKV 153
             +  KF+N +LDK+
Sbjct: 114 DEEASKFVNGILDKL 128


>gi|308048552|ref|YP_003912118.1| NusB antitermination factor [Ferrimonas balearica DSM 9799]
 gi|307630742|gb|ADN75044.1| NusB antitermination factor [Ferrimonas balearica DSM 9799]
          Length = 136

 Score = 62.0 bits (149), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 45/145 (31%), Positives = 73/145 (50%), Gaps = 14/145 (9%)

Query: 10  LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF 69
           +K S RR   RLA VQA+Y   + G +  +I  E+ T       E D +      DL +F
Sbjct: 1   MKPSERRKARRLA-VQAIYSWQMSGNAVADIEHEFLT-------EQDTKGA----DLGYF 48

Query: 70  RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISE 129
           R ++ GV+ +  ++D  +   L        +D +  +ILR    EL+    VP +V+I+E
Sbjct: 49  RELLVGVVSQSSNLDARLKPNLAR--LVEEVDQLELAILRLAAFELLHRDDVPYKVVINE 106

Query: 130 YVCIAHDFFYGDEPKFINAVLDKVS 154
            + +A  F   +  KF+N VLDK++
Sbjct: 107 AIELAKAFGAEESHKFVNGVLDKLA 131


>gi|145224333|ref|YP_001135011.1| transcription antitermination protein NusB [Mycobacterium gilvum
           PYR-GCK]
 gi|315444665|ref|YP_004077544.1| NusB antitermination factor [Mycobacterium sp. Spyr1]
 gi|189035893|sp|A4TBX3|NUSB_MYCGI RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|145216819|gb|ABP46223.1| NusB antitermination factor [Mycobacterium gilvum PYR-GCK]
 gi|315262968|gb|ADT99709.1| NusB antitermination factor [Mycobacterium sp. Spyr1]
          Length = 164

 Score = 62.0 bits (149), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 46/146 (31%), Positives = 66/146 (45%), Gaps = 8/146 (5%)

Query: 8   KDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLE 67
            D K    R  AR  AV  L++ +  G +  E+    E     AD   D +   L+    
Sbjct: 2   PDRKGDRGRHQARKRAVDLLFEAEARGITAAEV---AEARNALADNGAD-DIAPLN---P 54

Query: 68  WFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVII 127
           +   +  GV D   HID LIS+ L + W+  RL  +  ++LR  V EL+    VP  V +
Sbjct: 55  YTVTVARGVTDHAAHIDDLISAHL-QGWTLDRLPAVDRAVLRVAVWELLHAVDVPEPVAV 113

Query: 128 SEYVCIAHDFFYGDEPKFINAVLDKV 153
            E V +A      D P F+N VL +V
Sbjct: 114 DEAVELAKQLSTDDSPGFVNGVLGQV 139


>gi|91203372|emb|CAJ71025.1| unknown protein [Candidatus Kuenenia stuttgartiensis]
          Length = 422

 Score = 61.6 bits (148), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 45/138 (32%), Positives = 70/138 (50%), Gaps = 12/138 (8%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           R IAR  A++ALYQ+D++G       +E E   FC     +   +Y     ++  +++ G
Sbjct: 4   RTIARELAIKALYQLDLLGDK-----AETEIDEFCRQNA-EKPDIY-----KFALLLVTG 52

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
                + ID  IS    E W   R+ +I  +ILR GV EL+    +P +V I+E + +A 
Sbjct: 53  CRSHVKEIDERISLS-AENWDLHRMAVIDKNILRLGVYELLYRDDIPPKVSINEAIELAK 111

Query: 136 DFFYGDEPKFINAVLDKV 153
            F   D   F+N +LDKV
Sbjct: 112 KFGDKDSGMFVNGILDKV 129


>gi|152976586|ref|YP_001376103.1| transcription antitermination protein NusB [Bacillus cereus subsp.
           cytotoxis NVH 391-98]
 gi|189035878|sp|A7GSK0|NUSB_BACCN RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|152025338|gb|ABS23108.1| NusB antitermination factor [Bacillus cytotoxicus NVH 391-98]
          Length = 130

 Score = 61.6 bits (148), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 47/142 (33%), Positives = 69/142 (48%), Gaps = 18/142 (12%)

Query: 15  RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74
           +R  AR  A+QALYQ+DI G    ++  E  T     +T             E+   ++ 
Sbjct: 2   KRRTARERAMQALYQMDITGELNPKVAVE-NTLDEGEETN------------EFLDSLVG 48

Query: 75  GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134
           G ++ K+ ID LI   L +KW   R+ ++  SILR  V E+     +P  V I+E + IA
Sbjct: 49  GFVEHKETIDELIRQNL-KKWKLERISIVDRSILRLAVYEMKYMEEIPHNVTINEAIEIA 107

Query: 135 HDFFYGDEP--KFINAVLDKVS 154
             F  GDE   +FIN VL  + 
Sbjct: 108 KTF--GDEESRRFINGVLSNIK 127


>gi|118617385|ref|YP_905717.1| transcription antitermination protein NusB [Mycobacterium ulcerans
           Agy99]
 gi|118569495|gb|ABL04246.1| N utilization substance protein NusB [Mycobacterium ulcerans Agy99]
          Length = 173

 Score = 61.6 bits (148), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 45/146 (30%), Positives = 72/146 (49%), Gaps = 12/146 (8%)

Query: 8   KDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLE 67
           K +K  H+   AR  AV  +++ +  G    EI ++  T    A+T+ DV  ++      
Sbjct: 8   KPVKGRHQ---ARKRAVDLMFEAEARGLGPGEI-ADLRTE--LAETKPDVAPLH-----P 56

Query: 68  WFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVII 127
           +   +  G+ +   HID LI+S L + W+  RL  +  +ILR  V EL+    VP  V +
Sbjct: 57  YTAAVARGIGEHAAHIDDLITSHL-QGWTLDRLPAVDRAILRVAVWELLYADDVPEPVAV 115

Query: 128 SEYVCIAHDFFYGDEPKFINAVLDKV 153
            E V +A +    D P F+N VL +V
Sbjct: 116 DEAVELAKELSTDDSPSFVNGVLGQV 141


>gi|319651493|ref|ZP_08005621.1| transcription antitermination protein NusB [Bacillus sp.
           2_A_57_CT2]
 gi|317396808|gb|EFV77518.1| transcription antitermination protein NusB [Bacillus sp.
           2_A_57_CT2]
          Length = 129

 Score = 61.6 bits (148), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 50/146 (34%), Positives = 70/146 (47%), Gaps = 23/146 (15%)

Query: 15  RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYL-HVDLEWFRVII 73
           +R  AR  A+QAL+QID+                  A+ E  +E V       E+   ++
Sbjct: 2   KRRTAREKALQALFQIDV----------------SQAEPETAIEHVLEGEKSDEYLNKLV 45

Query: 74  HGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIE-CHSVPVEVIISEYVC 132
            GV+  K+ ID  I   L EKW+  RL  +  ++LR  V EL+     VP  V++ E + 
Sbjct: 46  SGVLQHKETIDGEIKGFL-EKWTLERLATVDRNLLRLSVYELLYLAEEVPANVVLDEAIE 104

Query: 133 IAHDFFYGDE--PKFINAVLDKVSRK 156
           IA    YGD+   KFIN VL KV  K
Sbjct: 105 IAK--LYGDDQSSKFINGVLSKVKEK 128


>gi|71279330|ref|YP_268274.1| transcription termination/antitermination factor NusB [Colwellia
           psychrerythraea 34H]
 gi|119390761|sp|Q485J1|NUSB_COLP3 RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|71145070|gb|AAZ25543.1| transcription termination/antitermination factor NusB [Colwellia
           psychrerythraea 34H]
          Length = 138

 Score = 61.6 bits (148), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 46/143 (32%), Positives = 66/143 (46%), Gaps = 14/143 (9%)

Query: 10  LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF 69
           +K S RR  AR  AVQA+Y   +      +I        F AD            D+E+F
Sbjct: 1   MKPSPRRK-ARELAVQAVYSWQVSKNPVNDI-----EVNFIADNS------KRRFDIEYF 48

Query: 70  RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISE 129
           ++++ GV      ID  I   +        +D +  +ILR  V EL +C  VP  V+I+E
Sbjct: 49  QLLLRGVTTNIGSIDEAIIPYVDR--PLDDIDQVEKAILRVAVFELKDCTDVPYRVVINE 106

Query: 130 YVCIAHDFFYGDEPKFINAVLDK 152
            + +A  F   D  KF+N VLDK
Sbjct: 107 AIELAKSFAADDSHKFVNGVLDK 129


>gi|54025601|ref|YP_119843.1| transcription antitermination protein NusB [Nocardia farcinica IFM
           10152]
 gi|81602600|sp|Q5YTL2|NUSB_NOCFA RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|54017109|dbj|BAD58479.1| putative transcription termination factor [Nocardia farcinica IFM
           10152]
          Length = 169

 Score = 61.6 bits (148), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 47/150 (31%), Positives = 69/150 (46%), Gaps = 11/150 (7%)

Query: 5   DNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVY-LH 63
           D K   K    R  AR  AV  L++ +       ++++E       AD     +SV  LH
Sbjct: 7   DKKSTFKKLGARHKARRRAVDLLFEAEARDVDAADLLTER------ADLATRDQSVAPLH 60

Query: 64  VDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPV 123
               + R ++ GV D  + +D  I S L + W+ SRL  +  +ILR  V EL     VP 
Sbjct: 61  A---YTRTLVEGVADELERVDGTIESYL-QDWTLSRLPAVDRAILRVAVWELFHATDVPP 116

Query: 124 EVIISEYVCIAHDFFYGDEPKFINAVLDKV 153
            V + E V +A +    D P F+N VL +V
Sbjct: 117 VVAVDEAVELAKELSTDDSPSFVNGVLGQV 146


>gi|312793191|ref|YP_004026114.1| nusb antitermination factor [Caldicellulosiruptor kristjanssonii
           177R1B]
 gi|312180331|gb|ADQ40501.1| NusB antitermination factor [Caldicellulosiruptor kristjanssonii
           177R1B]
          Length = 134

 Score = 61.6 bits (148), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 38/127 (29%), Positives = 65/127 (51%), Gaps = 7/127 (5%)

Query: 36  STTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKW 95
              +I+  Y+ +R     EL+ +  +  +D ++   ++ GV+  +Q ID LI    ++ W
Sbjct: 12  GQQDIMEFYKKFR-----ELNQDEDFKDIDEKYLERLLKGVIQNQQRIDNLIEKY-SKDW 65

Query: 96  SFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSR 155
             SRL M+   ++R  V EL+    VPV V I E V +A  F     P F+N +L +++ 
Sbjct: 66  PLSRLPMVELELMRIAVYELLFEEDVPVSVAIDEAVDMASIFGIEKAPSFVNGILGRIA- 124

Query: 156 KEEIKRS 162
             E+KR 
Sbjct: 125 ANEVKRG 131


>gi|327439755|dbj|BAK16120.1| transcription termination factor [Solibacillus silvestris StLB046]
          Length = 128

 Score = 61.6 bits (148), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 46/150 (30%), Positives = 70/150 (46%), Gaps = 31/150 (20%)

Query: 15  RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLE------W 68
           +R  AR  A+QAL+Q+D                     TEL +E    HV  E      +
Sbjct: 2   KRTEARQKALQALFQLD--------------------STELTIEEAIGHVLEEEQKSNAF 41

Query: 69  FRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIIS 128
              ++ G  +  + ID  +   L EKW+ +RL  I  +ILR  V EL+     P +VI++
Sbjct: 42  LEQLVRGTTENIEAIDAALEKNL-EKWTINRLPKIERTILRLAVYELLYAEETPNKVIMN 100

Query: 129 EYVCIAHDFFYGDEP--KFINAVLDKVSRK 156
           E + ++  F  GDE   KF+N VL K + +
Sbjct: 101 EAIELSKTF--GDEKSSKFVNGVLSKFTEQ 128


>gi|205374079|ref|ZP_03226879.1| transcription antitermination protein NusB [Bacillus coahuilensis
           m4-4]
          Length = 129

 Score = 61.6 bits (148), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 50/147 (34%), Positives = 70/147 (47%), Gaps = 32/147 (21%)

Query: 15  RRGIARLAAVQALYQIDIIGCSTTEII------SEYETY--RFCADTELDVESVYLHVDL 66
           +R  AR  A+QAL+Q+D+   S  E +      SE + Y  +    TE ++E        
Sbjct: 2   KRHTAREKALQALFQMDMSQLSGQEALTNVTEESEMDDYLSKLVLQTETNLE-------- 53

Query: 67  EWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVI 126
                    V+D+K   +L       EKWSF RL  +  SILR  V E++    VP +V 
Sbjct: 54  ---------VIDQKIRENL-------EKWSFERLAKVDRSILRLTVCEMMFIEDVPNKVA 97

Query: 127 ISEYVCIAHDFFYGDEPKFINAVLDKV 153
           I+E + +A  F      KFINAVL KV
Sbjct: 98  INEAIELAKTFGDDQSSKFINAVLSKV 124


>gi|157692931|ref|YP_001487393.1| transcription antitermination protein NusB [Bacillus pumilus
           SAFR-032]
 gi|166918803|sp|A8FF16|NUSB_BACP2 RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|157681689|gb|ABV62833.1| transcription antitermination protein NusB [Bacillus pumilus
           SAFR-032]
          Length = 131

 Score = 61.6 bits (148), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 44/154 (28%), Positives = 74/154 (48%), Gaps = 30/154 (19%)

Query: 15  RRGIARLAAVQALYQIDIIGCSTTEIIS----EYETYRFCADTELDVESVYLHVDLEWFR 70
           +R  AR  A+Q L+QID+      E I+    E E+  F                   F 
Sbjct: 2   KRRTAREKALQTLFQIDVSNIDPKEAITHALDEQESDPF-------------------FE 42

Query: 71  VIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEY 130
            ++ GV+++K  +D +IS  L   W   R+  +  +ILR  V E++    +PV V ++E 
Sbjct: 43  ELVFGVLEQKDKLDDMISQHLV-NWKLDRIANVDRAILRLSVYEMVYQEDIPVSVSMNEA 101

Query: 131 VCIAHDFFYGDE--PKFINAVLDKVSRKEEIKRS 162
           + +A    +GD+  PKF+N VL  +  K ++K+ 
Sbjct: 102 IELAK--LFGDDKAPKFVNGVLSNI--KNDLKQQ 131


>gi|294635301|ref|ZP_06713799.1| transcription antitermination factor NusB [Edwardsiella tarda ATCC
           23685]
 gi|291091310|gb|EFE23871.1| transcription antitermination factor NusB [Edwardsiella tarda ATCC
           23685]
          Length = 139

 Score = 61.6 bits (148), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 44/139 (31%), Positives = 70/139 (50%), Gaps = 13/139 (9%)

Query: 23  AVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQH 82
           AVQALY   I      ++      Y+F   +E DV+ V    D+ +FR ++ GV     +
Sbjct: 13  AVQALYSWQISKNDIADV-----EYQFL--SEQDVKDV----DVNYFRELLSGVASNADY 61

Query: 83  IDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDE 142
           +D L++  L+ +     L  +  +ILR  + EL +   VP +V I+E V +A  F   D 
Sbjct: 62  LDGLMAPVLSRQ--LDELGQVEKAILRVSIYELSKRQDVPYKVAINEGVELAKTFGAEDS 119

Query: 143 PKFINAVLDKVSRKEEIKR 161
            KF+N VLDK++ +    R
Sbjct: 120 HKFVNGVLDKIAPQVRPNR 138


>gi|78485740|ref|YP_391665.1| NusB antitermination factor [Thiomicrospira crunogena XCL-2]
 gi|119390843|sp|Q31FT2|NUSB_THICR RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|78364026|gb|ABB41991.1| NusB antitermination factor [Thiomicrospira crunogena XCL-2]
          Length = 161

 Score = 61.6 bits (148), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 42/139 (30%), Positives = 67/139 (48%), Gaps = 13/139 (9%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           R   R  A+QALYQ  +    T +II ++       DT           D+  F+ I++ 
Sbjct: 24  RTQTRRVALQALYQWQVNHSETVDIIKQFSEEGRLVDT-----------DVALFQEIVNE 72

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
           V +    +D L +  L    + +R+D +  +I+R GV EL     +P  V+I+E V +A 
Sbjct: 73  VANHAADLDELYAPFLDR--AVARIDPVEKNIMRMGVFELQNKLEIPYRVVINESVELAK 130

Query: 136 DFFYGDEPKFINAVLDKVS 154
            F   D  K+IN +LDK +
Sbjct: 131 RFGAEDSHKYINGILDKAA 149


>gi|254448007|ref|ZP_05061471.1| transcription antitermination factor NusB [gamma proteobacterium
           HTCC5015]
 gi|198262433|gb|EDY86714.1| transcription antitermination factor NusB [gamma proteobacterium
           HTCC5015]
          Length = 188

 Score = 61.6 bits (148), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 46/151 (30%), Positives = 73/151 (48%), Gaps = 10/151 (6%)

Query: 7   KKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVE--SVYLHV 64
           +K L  +  R   R   +QALYQ       +++++ ++       D E+  E  +    V
Sbjct: 39  RKKLSRTEARRKTRQRILQALYQCYFNPLPSSKLVQQF------YDDEVGEEEGNDMFGV 92

Query: 65  DLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVE 124
           D ++F+  +   +D+ + +D L   C   K    RLD +   ILR  V EL E   VP  
Sbjct: 93  DADFFQAALSTCVDKTEQLDELY--CAHLKMPIDRLDPVELCILRLAVFELSERLDVPRR 150

Query: 125 VIISEYVCIAHDFFYGDEPKFINAVLDKVSR 155
           V+I+E V +A  +   D  KFIN V+DK +R
Sbjct: 151 VVINEAVELAKSYGAEDGHKFINGVIDKTAR 181


>gi|225021344|ref|ZP_03710536.1| hypothetical protein CORMATOL_01363 [Corynebacterium matruchotii
           ATCC 33806]
 gi|224945726|gb|EEG26935.1| hypothetical protein CORMATOL_01363 [Corynebacterium matruchotii
           ATCC 33806]
          Length = 277

 Score = 61.6 bits (148), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 33/82 (40%), Positives = 45/82 (54%)

Query: 72  IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
           II GV +    ID +I+  L E W  SR+  +  +ILR  V E+I    VPV+  +SE V
Sbjct: 40  IIAGVAEELNRIDDVIAEYLAENWELSRISAVDRAILRVAVWEMIFNPDVPVKTALSEAV 99

Query: 132 CIAHDFFYGDEPKFINAVLDKV 153
            +A  +     P +INAVLD V
Sbjct: 100 ELASQYSGASAPAYINAVLDSV 121


>gi|1303915|dbj|BAA12571.1| YqhZ [Bacillus subtilis]
          Length = 131

 Score = 61.6 bits (148), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 40/139 (28%), Positives = 64/139 (46%), Gaps = 16/139 (11%)

Query: 15  RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74
           +R  AR  A+QAL+QID+   +  E I             LD E         +F  ++H
Sbjct: 2   KRRTAREKALQALFQIDVSDIAVNEAIEHA----------LDEEKTD-----PFFEQLVH 46

Query: 75  GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134
           GV++ +  +D +IS  L   W   R+  +  +ILR    E+     +PV V ++E + +A
Sbjct: 47  GVLEHQDQLDEMISKHLV-NWKLDRIANVDRAILRLAAYEMAYAEDIPVNVSMNEAIELA 105

Query: 135 HDFFYGDEPKFINAVLDKV 153
             F      KF+N VL  +
Sbjct: 106 KRFGDDKATKFVNGVLSNI 124


>gi|307299170|ref|ZP_07578971.1| NusB antitermination factor [Thermotogales bacterium mesG1.Ag.4.2]
 gi|306914966|gb|EFN45352.1| NusB antitermination factor [Thermotogales bacterium mesG1.Ag.4.2]
          Length = 148

 Score = 61.6 bits (148), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 36/120 (30%), Positives = 61/120 (50%), Gaps = 11/120 (9%)

Query: 47  YRFCADTELDVESVYLHVDLEWF----------RVIIHGVMDRKQHIDLLISSCLTEKWS 96
           Y+F  + +++  S YL  +L +F          R     ++  +  ID +I   LT  W+
Sbjct: 21  YQFDFNEDMESSSDYLEQELSFFSMEMEMKLRTRKYFDTILKNRNEIDEIIRKHLT-NWT 79

Query: 97  FSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRK 156
           F RL     ++LR G  E+I    +P+EV ++E + IA  +      KF+N VLDK++R+
Sbjct: 80  FERLASTDKNVLRLGAYEIIYEPDIPIEVTLNESIDIAKKYGSEQGGKFVNGVLDKIARE 139


>gi|323359977|ref|YP_004226373.1| transcription termination factor [Microbacterium testaceum StLB037]
 gi|323276348|dbj|BAJ76493.1| transcription termination factor [Microbacterium testaceum StLB037]
          Length = 136

 Score = 61.2 bits (147), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 43/140 (30%), Positives = 72/140 (51%), Gaps = 9/140 (6%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           R  AR  A+  L+Q D+ G     I+   E  R  A +E D ++ +L+      R I+ G
Sbjct: 4   RTKARKRALDILFQADVRG-EELPIMLAAEAKR--AASEPDRQASWLYA-----RDIVDG 55

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
           V+D +  ID  I++  ++ WS  R+  +  ++LR G  E++    VP  V I E V +A 
Sbjct: 56  VIDNRDAIDEQITT-FSKDWSLQRMPAVDRALLRIGTWEILYNDEVPTAVAIDEAVELAK 114

Query: 136 DFFYGDEPKFINAVLDKVSR 155
           +F   D   F++ VL +++R
Sbjct: 115 EFSTDDSGSFVHGVLARIAR 134


>gi|269138332|ref|YP_003295032.1| transcription termination factor [Edwardsiella tarda EIB202]
 gi|267983992|gb|ACY83821.1| transcription termination factor [Edwardsiella tarda EIB202]
 gi|304558364|gb|ADM41028.1| Transcription termination protein NusB [Edwardsiella tarda FL6-60]
          Length = 139

 Score = 61.2 bits (147), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 43/132 (32%), Positives = 68/132 (51%), Gaps = 13/132 (9%)

Query: 23  AVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQH 82
           AVQALY   I      ++      Y+F   +E DV+ V    D+ +FR ++ GV     +
Sbjct: 13  AVQALYSWQISKNDIADV-----EYQFL--SEQDVKDV----DVNYFRELLSGVASNADY 61

Query: 83  IDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDE 142
           +D L++  L+ +     L  +  +ILR  + EL +   VP +V I+E + +A  F   D 
Sbjct: 62  LDGLMAPVLSRQ--LEELGQVERAILRVSIYELSKRQDVPYKVAINEGIELAKTFGAEDS 119

Query: 143 PKFINAVLDKVS 154
            KF+N VLDKV+
Sbjct: 120 HKFVNGVLDKVA 131


>gi|261346385|ref|ZP_05974029.1| transcription antitermination factor NusB [Providencia rustigianii
           DSM 4541]
 gi|282565703|gb|EFB71238.1| transcription antitermination factor NusB [Providencia rustigianii
           DSM 4541]
          Length = 138

 Score = 61.2 bits (147), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 41/132 (31%), Positives = 64/132 (48%), Gaps = 13/132 (9%)

Query: 23  AVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQH 82
           AVQA+Y   + G    E+      Y F A+ ++        VD+ +FR +I G+      
Sbjct: 13  AVQAIYSWQLSGNPIAEV-----EYEFLAEQDMS------DVDVNYFRELISGIASNATK 61

Query: 83  IDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDE 142
           +D L+S  L+ +     L  +  +ILR  + EL     VP +V I+E + +A  F   D 
Sbjct: 62  LDQLMSPYLSRQ--LEELGQVEKAILRVSMYELSYRQDVPFKVAINEGIELAKVFGAEDS 119

Query: 143 PKFINAVLDKVS 154
            KF+N VLDK +
Sbjct: 120 HKFVNGVLDKAA 131


>gi|304407046|ref|ZP_07388700.1| NusB antitermination factor [Paenibacillus curdlanolyticus YK9]
 gi|304344033|gb|EFM09873.1| NusB antitermination factor [Paenibacillus curdlanolyticus YK9]
          Length = 156

 Score = 61.2 bits (147), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 40/139 (28%), Positives = 66/139 (47%), Gaps = 1/139 (0%)

Query: 15  RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74
           +R +AR  AVQ+LYQ+++   +  E +          D E+            + R ++ 
Sbjct: 2   KRRLAREIAVQSLYQMEMNEVTAEEAVDMLMEEARQQDNEIGAHPAEAAKVNAFTRGLVF 61

Query: 75  GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134
           GV++RK  ID ++   LT  W   RL  +   ILR    E++    VP +  I+E + +A
Sbjct: 62  GVIERKTAIDQMLQQYLT-GWQVDRLSRVDRQILRLAAYEILFRDDVPPKAAINEAIELA 120

Query: 135 HDFFYGDEPKFINAVLDKV 153
             F   +  KF+N VL K+
Sbjct: 121 KHFGTDESGKFVNGVLGKL 139


>gi|157364365|ref|YP_001471132.1| transcription antitermination protein NusB [Thermotoga lettingae
           TMO]
 gi|254772664|sp|A8F7D4|NUSB_THELT RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|157314969|gb|ABV34068.1| NusB antitermination factor [Thermotoga lettingae TMO]
          Length = 140

 Score = 61.2 bits (147), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 34/83 (40%), Positives = 47/83 (56%), Gaps = 1/83 (1%)

Query: 73  IHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVC 132
           + G+ +    ID  IS CL E WS  RL ++  SILR    EL+    VP+EV + E V 
Sbjct: 49  VKGIYENLPSIDEKISLCL-ENWSLQRLSLVDRSILRLATYELLYESDVPIEVTLDEAVE 107

Query: 133 IAHDFFYGDEPKFINAVLDKVSR 155
           IA  +   +  KF+N VLDKV++
Sbjct: 108 IAKKYGTENSSKFVNGVLDKVAK 130


>gi|305681487|ref|ZP_07404294.1| transcription antitermination factor NusB [Corynebacterium
           matruchotii ATCC 14266]
 gi|305659692|gb|EFM49192.1| transcription antitermination factor NusB [Corynebacterium
           matruchotii ATCC 14266]
          Length = 312

 Score = 61.2 bits (147), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 33/82 (40%), Positives = 45/82 (54%)

Query: 72  IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
           II GV +    ID +I+  L E W  SR+  +  +ILR  V E+I    VPV+  +SE V
Sbjct: 75  IIAGVAEELNRIDDVIAEYLAENWELSRISAVDRAILRVAVWEMIFNPDVPVKTALSEAV 134

Query: 132 CIAHDFFYGDEPKFINAVLDKV 153
            +A  +     P +INAVLD V
Sbjct: 135 ELASQYSGASAPAYINAVLDSV 156


>gi|120553778|ref|YP_958129.1| NusB antitermination factor [Marinobacter aquaeolei VT8]
 gi|166215695|sp|A1TYX3|NUSB_MARAV RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|120323627|gb|ABM17942.1| NusB antitermination factor [Marinobacter aquaeolei VT8]
          Length = 158

 Score = 61.2 bits (147), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 44/155 (28%), Positives = 74/155 (47%), Gaps = 13/155 (8%)

Query: 2   TIQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVY 61
           + Q  K     +  R  AR  A+Q LYQ        ++I +E     F  D ++      
Sbjct: 8   SPQPGKTGQPKAGDRRRARALAMQGLYQRHFSKTPISDIEAE-----FMVDNDMS----- 57

Query: 62  LHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSV 121
             VD+ +FR ++ GV   +  +D L+   L        +D +  +I+R G  EL     V
Sbjct: 58  -KVDIMYFRDLLRGVHREQAELDKLLEPFLDR--PLKEVDPVELAIVRLGAYELKHRIDV 114

Query: 122 PVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRK 156
           P +V+I+E + +A  F   +  KF+N++LDK+SR+
Sbjct: 115 PYKVVINEGIEMAKRFGGTEGHKFVNSILDKLSRR 149


>gi|325474207|gb|EGC77395.1| N utilization substance protein B [Treponema denticola F0402]
          Length = 136

 Score = 61.2 bits (147), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 41/147 (27%), Positives = 70/147 (47%), Gaps = 12/147 (8%)

Query: 10  LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF 69
           + +  RRG  R+ A QAL   D+ G     ++ +   + +  +  +   + YL       
Sbjct: 1   MSVGRRRG--RILAFQALVAWDVGGA----VLDDLLNFSWQNENSIKDPNSYLFP----- 49

Query: 70  RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISE 129
           ++++ G ++    ID +I   L + W   RL+ +  +ILR  V  LI     P  ++I E
Sbjct: 50  KMMVLGTIENITEIDKVIQENL-DNWVIDRLNSVDKAILRLSVYSLIYQKDTPPPIVIDE 108

Query: 130 YVCIAHDFFYGDEPKFINAVLDKVSRK 156
            + +A DF   D  KF+NAVLD +  K
Sbjct: 109 AINLAKDFGTDDSYKFVNAVLDSIKNK 135


>gi|269216070|ref|ZP_06159924.1| transcription antitermination factor NusB [Slackia exigua ATCC
           700122]
 gi|269130329|gb|EEZ61407.1| transcription antitermination factor NusB [Slackia exigua ATCC
           700122]
          Length = 218

 Score = 61.2 bits (147), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 44/146 (30%), Positives = 72/146 (49%), Gaps = 14/146 (9%)

Query: 19  ARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMD 78
            R +A   LYQ +IIG     I+ E +            E   L+   E+ R+++ G   
Sbjct: 12  GRRSAASVLYQSEIIGKPVDRILEEGDI----------PEEAGLN---EYGRLLLLGFSA 58

Query: 79  RKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFF 138
            +  ID +IS   +  W+ +R+ M+   +LR  V E+    +VP+ V I+E V IA +F 
Sbjct: 59  HRAEIDRIISE-RSANWAVNRMPMVDRELLRITVYEMKYVDAVPIPVSINEAVEIAKEFG 117

Query: 139 YGDEPKFINAVLDKVSRKEEIKRSGC 164
             D  +FIN +L +V+R  + + SG 
Sbjct: 118 GDDSYRFINGLLGRVARDLDEQASGS 143


>gi|295698399|ref|YP_003603054.1| transcription antitermination factor NusB [Candidatus Riesia
           pediculicola USDA]
 gi|291157256|gb|ADD79701.1| transcription antitermination factor NusB [Candidatus Riesia
           pediculicola USDA]
          Length = 140

 Score = 61.2 bits (147), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 46/146 (31%), Positives = 74/146 (50%), Gaps = 14/146 (9%)

Query: 19  ARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMD 78
           AR+ AVQALY   I G   + I+ ++            ++S  + VD+E+F+ I  G  +
Sbjct: 8   ARIMAVQALYSWQISGTKNSLIVVDFLNM---------IQSKKIDVDIEYFKKIFIGTSN 58

Query: 79  RKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFF 138
           +   ID  +    +   +   +D I  +ILR GV EL+    +P +VII+E + ++  F 
Sbjct: 59  KVSKIDQKLFRHTSR--ALKLIDQIEKAILRLGVFELLYIK-IPYKVIINEAIELSKKFG 115

Query: 139 YGDEPKFINAVLDKVSRKEEIKRSGC 164
                KF+N VLDK+  K+  K SG 
Sbjct: 116 SERSYKFVNGVLDKIVFKK--KESGS 139


>gi|311069033|ref|YP_003973956.1| transcription antitermination protein NusB [Bacillus atrophaeus
           1942]
 gi|310869550|gb|ADP33025.1| transcription antitermination protein NusB [Bacillus atrophaeus
           1942]
          Length = 131

 Score = 61.2 bits (147), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 42/148 (28%), Positives = 72/148 (48%), Gaps = 18/148 (12%)

Query: 15  RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74
           +R  AR  A+QAL+QID+   +  E I          D + D           +F  +++
Sbjct: 2   KRRTAREKALQALFQIDVSDIAPNEAIEHA-----LDDQKTD----------PFFEELVY 46

Query: 75  GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134
           GV+D +  +D +IS  L   W   R+  +  ++LR  V E++    +PV V ++E + +A
Sbjct: 47  GVIDHQVQLDEMISKHLV-NWKLDRIANVDRAVLRLAVYEMVYVEDIPVNVSMNEAIELA 105

Query: 135 HDFFYGDEPKFINAVLDKVSRKEEIKRS 162
             F      KF+N VL  +  K +I++S
Sbjct: 106 KRFGDDKATKFVNGVLSNI--KSDIEQS 131


>gi|149378278|ref|ZP_01895989.1| NusB [Marinobacter algicola DG893]
 gi|149357443|gb|EDM45954.1| NusB [Marinobacter algicola DG893]
          Length = 158

 Score = 61.2 bits (147), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 45/141 (31%), Positives = 69/141 (48%), Gaps = 13/141 (9%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           R  AR  A+Q LYQ      S T+I SE     F  D ++        VD  +FR ++ G
Sbjct: 22  RRRARALAMQGLYQRHFSKSSITDIESE-----FIVDNDMS------KVDAAYFRDLLRG 70

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
           V   +  +D L+   L        +D I  +I+R G  EL     VP +V+I+E + +A 
Sbjct: 71  VHREQAELDRLLEPFLDR--PIHEVDAIELAIVRLGAYELKHRLDVPYKVVINEGIEMAK 128

Query: 136 DFFYGDEPKFINAVLDKVSRK 156
            F   +  KF+N++LDK+S +
Sbjct: 129 RFGGTEGHKFVNSLLDKLSHR 149


>gi|238918991|ref|YP_002932505.1| transcription antitermination factor NusB, [Edwardsiella ictaluri
           93-146]
 gi|259514829|sp|C5BCH6|NUSB_EDWI9 RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|238868559|gb|ACR68270.1| transcription antitermination factor NusB, putative [Edwardsiella
           ictaluri 93-146]
          Length = 139

 Score = 60.8 bits (146), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 43/132 (32%), Positives = 69/132 (52%), Gaps = 13/132 (9%)

Query: 23  AVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQH 82
           AVQALY   I      ++      Y+F   +E DV+ V    D+ +FR ++ GV    ++
Sbjct: 13  AVQALYSWQISKNDIADV-----EYQFL--SEQDVKDV----DVNYFRELLSGVASNAEY 61

Query: 83  IDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDE 142
           +D L++  L+ +     L  +  +ILR  + EL +   VP +V I+E + +A  F   D 
Sbjct: 62  LDGLMAPVLSRQ--LDELGQVERAILRVSIYELSKRQDVPYKVAINEGIELAKIFGAEDS 119

Query: 143 PKFINAVLDKVS 154
            KF+N VLDKV+
Sbjct: 120 HKFVNGVLDKVA 131


>gi|115377906|ref|ZP_01465091.1| transcription antitermination factor NusB [Stigmatella aurantiaca
           DW4/3-1]
 gi|310822844|ref|YP_003955202.1| n utilization substance protein b [Stigmatella aurantiaca DW4/3-1]
 gi|115365066|gb|EAU64116.1| transcription antitermination factor NusB [Stigmatella aurantiaca
           DW4/3-1]
 gi|309395916|gb|ADO73375.1| N utilization substance protein B [Stigmatella aurantiaca DW4/3-1]
          Length = 141

 Score = 60.8 bits (146), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 38/139 (27%), Positives = 65/139 (46%), Gaps = 7/139 (5%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           R   R  A+QALYQ+++   ++              + + D E+V    +L      + G
Sbjct: 4   RRTGRERALQALYQLEMTPSTSVHEALASAWAASSEEGKPDPEAVRFAQEL------VEG 57

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
           V  R+  +D LI    +  W   R+  I  ++LR GV EL     +P +V I+E V +  
Sbjct: 58  VQTRRAEVDQLIEKH-SHNWRLDRMSRIDRNVLRLGVFELKYRPDIPKKVSINEAVELGK 116

Query: 136 DFFYGDEPKFINAVLDKVS 154
           +F   +   F+N +LD+V+
Sbjct: 117 NFGTEESSAFVNGLLDRVA 135


>gi|254821798|ref|ZP_05226799.1| transcription antitermination protein NusB [Mycobacterium
           intracellulare ATCC 13950]
          Length = 169

 Score = 60.8 bits (146), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 43/135 (31%), Positives = 63/135 (46%), Gaps = 9/135 (6%)

Query: 19  ARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMD 78
           AR  AV  L++ +  G S  E++ +  T    A+ E+     Y          +  GV +
Sbjct: 11  ARKRAVDLLFEAEARGLSPAEVV-DVRTGLAEANPEIAPLQPYT-------AAVARGVGE 62

Query: 79  RKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFF 138
              H+D LISS L + W+  RL  +  +ILR  V EL+    VP  V + E V +A +  
Sbjct: 63  HAAHVDDLISSHL-QGWTLDRLPAVDRAILRVAVWELLYADDVPEPVAVDEAVQLAKELS 121

Query: 139 YGDEPKFINAVLDKV 153
             D P F+N VL  V
Sbjct: 122 TDDSPGFVNGVLGHV 136


>gi|296333411|ref|ZP_06875864.1| transcription antitermination protein NusB [Bacillus subtilis
           subsp. spizizenii ATCC 6633]
 gi|305675083|ref|YP_003866755.1| transcription antitermination protein NusB [Bacillus subtilis
           subsp. spizizenii str. W23]
 gi|296149609|gb|EFG90505.1| transcription antitermination protein NusB [Bacillus subtilis
           subsp. spizizenii ATCC 6633]
 gi|305413327|gb|ADM38446.1| transcription antitermination protein NusB [Bacillus subtilis
           subsp. spizizenii str. W23]
          Length = 131

 Score = 60.8 bits (146), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 43/148 (29%), Positives = 70/148 (47%), Gaps = 18/148 (12%)

Query: 15  RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74
           +R  AR  A+QAL+QID+   +  E I             LD E         +F  ++H
Sbjct: 2   KRRTAREKALQALFQIDVSDIAVNEAIEHA----------LDEEKTD-----PFFEQLVH 46

Query: 75  GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134
           GV++ +  +D +IS  L   W   R+  +  +ILR    E+     +PV V ++E + +A
Sbjct: 47  GVLEHQVQLDEMISKHLV-NWKLDRIANVDRAILRLAAYEMAYAEDIPVNVSMNEAIELA 105

Query: 135 HDFFYGDEPKFINAVLDKVSRKEEIKRS 162
             F      KF+N VL  +  K +I++S
Sbjct: 106 KRFGDDKATKFVNGVLSNI--KSDIEQS 131


>gi|298529745|ref|ZP_07017148.1| NusB antitermination factor [Desulfonatronospira thiodismutans
           ASO3-1]
 gi|298511181|gb|EFI35084.1| NusB antitermination factor [Desulfonatronospira thiodismutans
           ASO3-1]
          Length = 157

 Score = 60.8 bits (146), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 40/150 (26%), Positives = 72/150 (48%), Gaps = 9/150 (6%)

Query: 6   NKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVD 65
           +K   K +H R   R  A Q LY +     + T I+  +  ++   DT +         D
Sbjct: 4   HKPRTKTTHSRHAQREFAFQVLYSLHF-DQTGTHILDTFHHFKNDQDTAV-------QQD 55

Query: 66  LEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEV 125
           + +   +I+GV +  + +D  I    ++ W   R+ M+  +I+R  V E+I    +PV+V
Sbjct: 56  MSYALQLINGVRENLEELDAAIGRH-SQNWKVKRIAMVELTIMRLAVYEMIYREDIPVKV 114

Query: 126 IISEYVCIAHDFFYGDEPKFINAVLDKVSR 155
            I+E + +A  F   +   F+N +LD V+R
Sbjct: 115 GINEAIELAKTFGDNNSRNFVNGILDAVAR 144


>gi|127512123|ref|YP_001093320.1| transcription antitermination protein NusB [Shewanella loihica
           PV-4]
 gi|166215717|sp|A3QC63|NUSB_SHELP RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|126637418|gb|ABO23061.1| NusB antitermination factor [Shewanella loihica PV-4]
          Length = 134

 Score = 60.8 bits (146), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 46/148 (31%), Positives = 73/148 (49%), Gaps = 14/148 (9%)

Query: 10  LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF 69
           +K S RR   RLA VQA+Y   + G +  ++  E+E   F  + ++D       VD+ +F
Sbjct: 1   MKPSERRKARRLA-VQAIYSWQLSGNNVADV--EHE---FLTEQKID------GVDVSYF 48

Query: 70  RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISE 129
           R ++ G   +   +D LI   L     F  +  I  ++LR    EL     VP +V I+E
Sbjct: 49  RELLSGTTTKSAQLDELIMPHLER--PFDEVSPIEKAVLRIATYELTFRKDVPYKVAINE 106

Query: 130 YVCIAHDFFYGDEPKFINAVLDKVSRKE 157
            + +A  F   D  KF+N +LDK+  K+
Sbjct: 107 AIELAKAFGAEDGHKFVNGILDKIVAKK 134


>gi|212638784|ref|YP_002315304.1| transcription antitermination protein NusB [Anoxybacillus
           flavithermus WK1]
 gi|212560264|gb|ACJ33319.1| Transcription termination factor [Anoxybacillus flavithermus WK1]
          Length = 152

 Score = 60.8 bits (146), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 48/155 (30%), Positives = 75/155 (48%), Gaps = 27/155 (17%)

Query: 5   DNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIIS---EYETYRFCADTELDVESVY 61
           DN  +  L  +R  AR  A+QAL+QID+ G    E ++   E ET  F            
Sbjct: 16  DNMIERVLVMKRHTAREKALQALFQIDVGGIEPHEAVANVIEEETDPFM----------- 64

Query: 62  LHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSV 121
                    +++ GV++ ++ ID L+   L EKW+  R+  +  SILR  V E+     +
Sbjct: 65  --------EMLVFGVVEHQKEIDDLLRQHL-EKWTLERVANVDRSILRMAVFEMKYMDDI 115

Query: 122 PVEVIISEYVCIAHDFFYGDEP--KFINAVLDKVS 154
           P+ V + E + +A    +GDE   +FIN VL K+ 
Sbjct: 116 PLSVSMDEAIELAK--VFGDEKSSRFINGVLAKIK 148


>gi|295106070|emb|CBL03613.1| transcription antitermination factor NusB [Gordonibacter pamelaeae
           7-10-1-b]
          Length = 160

 Score = 60.8 bits (146), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 45/144 (31%), Positives = 71/144 (49%), Gaps = 16/144 (11%)

Query: 14  HRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCA-DTELDVESVYLHVDLEWFRVI 72
           H R  AR +A+  LY  +I     T+I  E    R+ A D  L   +  L   +E  RV 
Sbjct: 6   HERTRARRSALALLYTSEITDEGATKIAEEG---RYLAEDGPLPDYATALVRGVEAHRVA 62

Query: 73  IHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVC 132
           I       +H+     +  +E W+ +R+ ++  SILR    E++    VP  V I+E V 
Sbjct: 63  ID------KHL-----AATSENWALARMPIVDRSILRLATYEMMYVDDVPTSVTINEAVE 111

Query: 133 IAHDFFYGDE-PKFINAVLDKVSR 155
           +A DF   DE P+F+N VL ++++
Sbjct: 112 LAKDFGGEDESPRFVNGVLGRIAK 135


>gi|300784648|ref|YP_003764939.1| transcription antiterminator NusB [Amycolatopsis mediterranei U32]
 gi|299794162|gb|ADJ44537.1| transcription antiterminator NusB [Amycolatopsis mediterranei U32]
          Length = 151

 Score = 60.8 bits (146), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 28/83 (33%), Positives = 45/83 (54%), Gaps = 1/83 (1%)

Query: 72  IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
           ++ GV  RK  ID L++    + W+  R+  +  ++LR GV EL+    VP  V I E V
Sbjct: 60  LVEGVTGRKTQIDELLAEH-AQGWTLERMPKVDLAVLRVGVYELLWAEDVPDPVAIDEAV 118

Query: 132 CIAHDFFYGDEPKFINAVLDKVS 154
            +A +    D P+F+N VL ++ 
Sbjct: 119 GLAKELSTDDSPRFVNGVLGRIG 141


>gi|302533374|ref|ZP_07285716.1| transcription antitermination factor NusB [Streptomyces sp. C]
 gi|302442269|gb|EFL14085.1| transcription antitermination factor NusB [Streptomyces sp. C]
          Length = 143

 Score = 60.8 bits (146), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 41/147 (27%), Positives = 70/147 (47%), Gaps = 12/147 (8%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           R  AR  A Q L++ D  G    E+++++  +    D +  V +  +         ++ G
Sbjct: 4   RSNARKRAFQILFEADQRGVPVREVLADWIRHSRSDDRQPPVNAFTMD--------LVEG 55

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
             D+ + ID LI +   + W   R+ ++  +ILR G  ELI     P  V I E V +A 
Sbjct: 56  YADKVKRIDDLIVTYAVD-WELDRMPVVDRNILRLGAYELIWVDETPDAVAIDEAVQLAK 114

Query: 136 DFFYGDEPKFINAVLDKVSRKEEIKRS 162
           +F   D P F+N +L   +R +++K S
Sbjct: 115 EFSTDDSPAFVNGLL---ARFKDLKPS 138


>gi|325833527|ref|ZP_08165976.1| transcription antitermination factor NusB [Eggerthella sp. HGA1]
 gi|325485451|gb|EGC87920.1| transcription antitermination factor NusB [Eggerthella sp. HGA1]
          Length = 200

 Score = 60.8 bits (146), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 43/143 (30%), Positives = 71/143 (49%), Gaps = 14/143 (9%)

Query: 14  HRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVII 73
           H R  AR AA+Q LY        T+EI  E        D  L+ +        E+  +++
Sbjct: 6   HERTSARRAALQVLY--------TSEITDESPAAIAEGDRRLEEDGPLP----EYALMLV 53

Query: 74  HGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCI 133
            GV   +  ID  +++  +E WS +R+ ++  SILR    E++    VP  V I+E V +
Sbjct: 54  RGVESHRIAIDNHLAAT-SENWSLARMPIVDRSILRLATFEMMYIDDVPTSVTINEAVEL 112

Query: 134 AHDFFYGDEP-KFINAVLDKVSR 155
           A DF   DE  +F+N +L ++++
Sbjct: 113 AKDFGGEDESHRFVNGILGRIAK 135


>gi|229543899|ref|ZP_04432958.1| NusB antitermination factor [Bacillus coagulans 36D1]
 gi|229325038|gb|EEN90714.1| NusB antitermination factor [Bacillus coagulans 36D1]
          Length = 132

 Score = 60.8 bits (146), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 44/139 (31%), Positives = 66/139 (47%), Gaps = 16/139 (11%)

Query: 15  RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74
           +R  AR  A+QAL+Q+D+   S  + I      R   D +   ES       ++   +++
Sbjct: 3   KRRTAREKALQALFQMDMNEASPEDAI------RNALDGQ---ESD------DYLEKLVN 47

Query: 75  GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134
           G       ID +IS  L E W+  RL  +  +ILR    EL+    VP  V I+E + IA
Sbjct: 48  GTATHLAEIDAMISQHL-ENWTLDRLAKVELNILRLAAYELMYAEDVPANVAINEALEIA 106

Query: 135 HDFFYGDEPKFINAVLDKV 153
             F      KFIN VL+++
Sbjct: 107 KRFADEKSAKFINGVLNQM 125


>gi|39996792|ref|NP_952743.1| N utilization substance protein B [Geobacter sulfurreducens PCA]
 gi|81702305|sp|Q74CI1|NUSB_GEOSL RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|39983680|gb|AAR35070.1| N utilization substance protein B [Geobacter sulfurreducens PCA]
 gi|298505803|gb|ADI84526.1| transcription termination factor NusB [Geobacter sulfurreducens
           KN400]
          Length = 138

 Score = 60.8 bits (146), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 28/83 (33%), Positives = 48/83 (57%), Gaps = 1/83 (1%)

Query: 72  IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
           ++ GV++ +Q ID  I+   ++ WS  R+  +  SILR  + EL+    +P  V I+E +
Sbjct: 50  LVRGVLEHRQEIDTAITGA-SKNWSIGRMARVDLSILRMAMYELLFRSDIPKNVTINEAI 108

Query: 132 CIAHDFFYGDEPKFINAVLDKVS 154
            +A  F   D P FIN +LD+++
Sbjct: 109 EVAKKFGTEDSPAFINGILDEIA 131


>gi|222055768|ref|YP_002538130.1| NusB antitermination factor [Geobacter sp. FRC-32]
 gi|254772641|sp|B9M1E7|NUSB_GEOSF RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|221565057|gb|ACM21029.1| NusB antitermination factor [Geobacter sp. FRC-32]
          Length = 145

 Score = 60.8 bits (146), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 42/144 (29%), Positives = 69/144 (47%), Gaps = 7/144 (4%)

Query: 12  LSHRRGIARLAAVQALYQIDIIGCSTTEIISE-YETYRFCADTELDVESVYLHVDLEWFR 70
           +S RR   R  A+QALY  D      T  + +  + +   ++  LDV         E   
Sbjct: 1   MSSRRE-GRELALQALYSSDAESLGGTFALKKIMDNFADGSEPSLDVHGRSFTFATE--- 56

Query: 71  VIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEY 130
            +++GV+   + ID  I    ++ WS +R+  +  +ILR  V EL     +P  V I+E 
Sbjct: 57  -LVNGVLSNSEAIDRKIEEK-SKNWSIARMAKVDLNILRLAVFELFYRPDIPKNVTINEA 114

Query: 131 VCIAHDFFYGDEPKFINAVLDKVS 154
           + +A  F   D P FIN +LD+++
Sbjct: 115 IEVAKKFGAEDSPAFINGILDEIA 138


>gi|317490198|ref|ZP_07948686.1| transcription antitermination factor NusB [Eggerthella sp.
           1_3_56FAA]
 gi|316910692|gb|EFV32313.1| transcription antitermination factor NusB [Eggerthella sp.
           1_3_56FAA]
          Length = 200

 Score = 60.8 bits (146), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 43/143 (30%), Positives = 71/143 (49%), Gaps = 14/143 (9%)

Query: 14  HRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVII 73
           H R  AR AA+Q LY        T+EI  E        D  L+ +        E+  +++
Sbjct: 6   HERTSARRAALQVLY--------TSEITDESPAAIAEGDRRLEEDGPLP----EYALMLV 53

Query: 74  HGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCI 133
            GV   +  ID  +++  +E WS +R+ ++  SILR    E++    VP  V I+E V +
Sbjct: 54  RGVESHRIAIDNHLAAT-SENWSLARMPIVDRSILRLATFEMMYIDDVPTSVTINEAVEL 112

Query: 134 AHDFFYGDEP-KFINAVLDKVSR 155
           A DF   DE  +F+N +L ++++
Sbjct: 113 AKDFGGEDESHRFVNGILGRIAK 135


>gi|315125804|ref|YP_004067807.1| transcription termination factor [Pseudoalteromonas sp. SM9913]
 gi|315014318|gb|ADT67656.1| transcription termination factor [Pseudoalteromonas sp. SM9913]
          Length = 137

 Score = 60.8 bits (146), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 44/147 (29%), Positives = 74/147 (50%), Gaps = 14/147 (9%)

Query: 10  LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF 69
           +K + RR  AR+ A+QA+Y   + G +  +I           + ++ +E+    +D+E+F
Sbjct: 1   MKPAARRK-ARILALQAVYSWQLSGNAIADI-----------EQQMLIENDVTKIDVEYF 48

Query: 70  RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISE 129
           + +  GV    + +D  +S  LT    F  LD +  +ILR    EL     VP +V I+E
Sbjct: 49  KDLARGVAVNHKQLDEAVSPHLTR--PFDELDEVERAILRLSSYELKFREDVPYKVAINE 106

Query: 130 YVCIAHDFFYGDEPKFINAVLDKVSRK 156
            + +A  F   D  KF+N VLDK  ++
Sbjct: 107 SIELAKMFGAEDSHKFVNGVLDKAVKQ 133


>gi|89073134|ref|ZP_01159673.1| transcription antitermination protein NusB [Photobacterium sp.
           SKA34]
 gi|89051087|gb|EAR56544.1| transcription antitermination protein NusB [Photobacterium sp.
           SKA34]
          Length = 156

 Score = 60.8 bits (146), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 46/155 (29%), Positives = 78/155 (50%), Gaps = 9/155 (5%)

Query: 10  LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYL---HVDL 66
           +K + RR  AR  AVQA+Y   +   +  +I   + +     + E   ++  L   H D+
Sbjct: 5   VKPAARRN-ARQFAVQAIYSWQLTKGNVADIEQHFLSGDKFEEEEHQADAPVLAAPHTDV 63

Query: 67  EWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVI 126
            +FR +  GV+   Q +D  +   L+       LD +  ++LR  + E+++   VP +V+
Sbjct: 64  SYFRDLFTGVVLSHQELDSKMRPYLSR--PLQDLDQMELALLRLAMYEMVKREDVPFKVV 121

Query: 127 ISEYVCIAHDFFYGDEPKFINAVLDKVS---RKEE 158
           I+E + +A  F   D  KFIN VLDK +   RKE+
Sbjct: 122 INEAIELAKLFGAEDSHKFINGVLDKAAPTLRKEK 156


>gi|86159160|ref|YP_465945.1| NusB antitermination factor [Anaeromyxobacter dehalogenans 2CP-C]
 gi|197123232|ref|YP_002135183.1| NusB antitermination factor [Anaeromyxobacter sp. K]
 gi|220918021|ref|YP_002493325.1| NusB antitermination factor [Anaeromyxobacter dehalogenans 2CP-1]
 gi|119372275|sp|Q2ILH8|NUSB_ANADE RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|238689890|sp|B4UIM1|NUSB_ANASK RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|254772609|sp|B8JEW3|NUSB_ANAD2 RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|85775671|gb|ABC82508.1| NusB antitermination factor [Anaeromyxobacter dehalogenans 2CP-C]
 gi|196173081|gb|ACG74054.1| NusB antitermination factor [Anaeromyxobacter sp. K]
 gi|219955875|gb|ACL66259.1| NusB antitermination factor [Anaeromyxobacter dehalogenans 2CP-1]
          Length = 142

 Score = 60.5 bits (145), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 42/152 (27%), Positives = 73/152 (48%), Gaps = 12/152 (7%)

Query: 12  LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71
           ++ RR  AR  A+QALYQID+      + +S +  ++     E +V        ++    
Sbjct: 1   MTSRRTRARERALQALYQIDVAAEGIDDALSRF--WKSFEPVEREV--------MDLAEG 50

Query: 72  IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
           ++ GV   ++ +D  I +  T  W   R+  +  ++LR  V EL+    VPV+V+I+E +
Sbjct: 51  LVRGVAQHRRAVDEAIEAVST-NWRLDRMAKVDRNVLRLAVFELLRTD-VPVKVVINEAI 108

Query: 132 CIAHDFFYGDEPKFINAVLDKVSRKEEIKRSG 163
            +   +       F+N VLDKV+      R G
Sbjct: 109 ELGKKYGSESSGAFVNGVLDKVASGLPPARRG 140


>gi|311030979|ref|ZP_07709069.1| transcription antitermination protein NusB [Bacillus sp. m3-13]
          Length = 133

 Score = 60.5 bits (145), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 41/139 (29%), Positives = 66/139 (47%), Gaps = 15/139 (10%)

Query: 15  RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74
           +R  +R  A+QA++Q+D+   +  E I+         D              ++   I+ 
Sbjct: 2   KRSESRKKALQAIFQMDLSDIAPDEAITNVLEEGERPD--------------DFLSSIVF 47

Query: 75  GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134
           G  + ++ ID  + S L EKWS  RL  +  +ILR  V E++    +PV V ++E + +A
Sbjct: 48  GTKEHQEEIDSTLKSHL-EKWSLDRLGTVDRTILRMTVFEMMFVEEIPVNVSMNEAIELA 106

Query: 135 HDFFYGDEPKFINAVLDKV 153
             F       FINAVL KV
Sbjct: 107 KTFGDDKSSGFINAVLSKV 125


>gi|260893142|ref|YP_003239239.1| NusB antitermination factor [Ammonifex degensii KC4]
 gi|260865283|gb|ACX52389.1| NusB antitermination factor [Ammonifex degensii KC4]
          Length = 155

 Score = 60.5 bits (145), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 38/143 (26%), Positives = 72/143 (50%), Gaps = 14/143 (9%)

Query: 12  LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71
           +S RR  AR AA+  L+Q+D+ G    E +      R  A+  L       +   E+   
Sbjct: 1   MSRRR--AREAALMVLFQVDVGGAVPEEALE-----RTLAEWRLG------NASREFATS 47

Query: 72  IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
           ++ G +  +  ID +I   L+++W   R++ +  +++R  + EL+    +P  V I+E V
Sbjct: 48  LVLGTLAYRPQIDRVIEE-LSQRWRLERMNRVDRNVMRLALYELLFRQDIPPAVAINEAV 106

Query: 132 CIAHDFFYGDEPKFINAVLDKVS 154
            +A  +   + P+F+N +L KV+
Sbjct: 107 ELAKRYGGEESPRFVNGILGKVA 129


>gi|326201953|ref|ZP_08191823.1| NusB antitermination factor [Clostridium papyrosolvens DSM 2782]
 gi|325987748|gb|EGD48574.1| NusB antitermination factor [Clostridium papyrosolvens DSM 2782]
          Length = 145

 Score = 60.5 bits (145), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 43/142 (30%), Positives = 72/142 (50%), Gaps = 12/142 (8%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           R  +R +A++ LYQ++I      E I          +  L+ ES+  + D E+ + I+ G
Sbjct: 3   RRASRESAMKLLYQLEIQKTDRDEQI----------NMALEDESLTEN-DREYIKGIVDG 51

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
           V D+   +D +I    T  W  +RL  I  SILR G+ E++    +P  V ++E V +A 
Sbjct: 52  VFDKTPVLDGIIEKKAT-GWKINRLSKIDLSILRIGIYEILYRDDIPFSVSVNEAVELAK 110

Query: 136 DFFYGDEPKFINAVLDKVSRKE 157
            +   D   F+N +L KVS+ +
Sbjct: 111 KYSNEDAGAFVNGLLAKVSKSD 132


>gi|119774157|ref|YP_926897.1| transcription antitermination protein NusB [Shewanella amazonensis
           SB2B]
 gi|166215714|sp|A1S4C1|NUSB_SHEAM RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|119766657|gb|ABL99227.1| NusB antitermination factor [Shewanella amazonensis SB2B]
          Length = 134

 Score = 60.5 bits (145), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 43/144 (29%), Positives = 68/144 (47%), Gaps = 14/144 (9%)

Query: 10  LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF 69
           +K S RR   RLA VQA+Y   + G +  ++      + F  + ELD       VD+ +F
Sbjct: 1   MKPSERRKARRLA-VQAIYSWQLSGNNVADV-----EHEFLTEQELD------GVDVAYF 48

Query: 70  RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISE 129
           R +  G   +   +D  +   L        +  +  +ILR  V EL     VP +V+I+E
Sbjct: 49  RELFAGAATKTAQLDEKLKPLLDR--PLEEVSPVEKAILRLAVYELTFRKDVPYKVVINE 106

Query: 130 YVCIAHDFFYGDEPKFINAVLDKV 153
            + +A  F   D  KF+N +LDK+
Sbjct: 107 AIELAKSFGAEDGHKFVNGILDKL 130


>gi|183982195|ref|YP_001850486.1| N utilization substance protein NusB [Mycobacterium marinum M]
 gi|183175521|gb|ACC40631.1| N utilization substance protein NusB [Mycobacterium marinum M]
          Length = 173

 Score = 60.5 bits (145), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 45/146 (30%), Positives = 71/146 (48%), Gaps = 12/146 (8%)

Query: 8   KDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLE 67
           K +K  H+   AR  AV  +++ +  G    EI ++  T    A+T+ DV  ++      
Sbjct: 8   KPVKGRHQ---ARKRAVDLMFEAEARGLGPGEI-ADLRTE--LAETKPDVAPLH-----P 56

Query: 68  WFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVII 127
           +   +  G+     HID LI+S L + W+  RL  +  +ILR  V EL+    VP  V +
Sbjct: 57  YTAAVARGIDQHAAHIDDLITSHL-QGWTLDRLPAVDRAILRVAVWELLYADDVPEPVAV 115

Query: 128 SEYVCIAHDFFYGDEPKFINAVLDKV 153
            E V +A +    D P F+N VL +V
Sbjct: 116 DEAVELAKELSTDDSPSFVNGVLGQV 141


>gi|325290021|ref|YP_004266202.1| NusB antitermination factor [Syntrophobotulus glycolicus DSM 8271]
 gi|324965422|gb|ADY56201.1| NusB antitermination factor [Syntrophobotulus glycolicus DSM 8271]
          Length = 146

 Score = 60.5 bits (145), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 39/143 (27%), Positives = 71/143 (49%), Gaps = 10/143 (6%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           R +AR  A++ LYQID+ G      ISE +        E ++   +      + + +I G
Sbjct: 3   RRLARETALKVLYQIDMTGE-----ISEMDKNIEYWAGEFNLPEKHQ----PFTKQLIEG 53

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
            + +K+ ID +I     E W+  R+ ++  +++R    E++   + P  V ++E + +A 
Sbjct: 54  TLSKKEEIDHMIGQNAHE-WALDRMSVVDRNLMRLASYEMLYLRNTPQRVSLNEAIELAK 112

Query: 136 DFFYGDEPKFINAVLDKVSRKEE 158
            F   D  KFIN +LD +  +EE
Sbjct: 113 KFGGDDSAKFINGILDNLMTQEE 135


>gi|317492962|ref|ZP_07951386.1| transcription antitermination factor NusB [Enterobacteriaceae
           bacterium 9_2_54FAA]
 gi|316919084|gb|EFV40419.1| transcription antitermination factor NusB [Enterobacteriaceae
           bacterium 9_2_54FAA]
          Length = 139

 Score = 60.5 bits (145), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 42/132 (31%), Positives = 69/132 (52%), Gaps = 13/132 (9%)

Query: 23  AVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQH 82
           AVQALY   I      ++      Y+F   +E DV+ V    D+ +FR ++ GV    ++
Sbjct: 13  AVQALYSWQISKNDIADV-----EYQFL--SEQDVKDV----DISYFRELLSGVATNAEY 61

Query: 83  IDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDE 142
           +D L++  L+ +     L  +  ++LR  + EL +   VP +V I+E + +A  F   D 
Sbjct: 62  LDGLMAPVLSRQ--LEELGQVERAVLRISLFELSKREDVPYKVAINEGIELAKTFGAEDS 119

Query: 143 PKFINAVLDKVS 154
            KF+N VLDKV+
Sbjct: 120 HKFVNGVLDKVA 131


>gi|226942829|ref|YP_002797902.1| transcription antitermination protein NusB [Azotobacter vinelandii
           DJ]
 gi|226717756|gb|ACO76927.1| transcription antitermination factor NusB [Azotobacter vinelandii
           DJ]
          Length = 131

 Score = 60.5 bits (145), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 41/133 (30%), Positives = 65/133 (48%), Gaps = 13/133 (9%)

Query: 24  VQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHI 83
           +QALYQ  + G    EI +++            V++ +  VD  +F  I+HGV  +K  I
Sbjct: 1   MQALYQWHVAGQPLNEIEAQFR-----------VDNDFSTVDGAYFHEILHGVPRQKTEI 49

Query: 84  DLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEP 143
           D   +  L      + +D +  +ILR    EL     VP  V+I+E + +A  F   D  
Sbjct: 50  DEAFAPLLDR--PLAEVDPVELAILRLSTYELSNRLDVPYRVVINEGIELAKVFGATDGH 107

Query: 144 KFINAVLDKVSRK 156
           KF+N VLDK++ +
Sbjct: 108 KFVNGVLDKLAPR 120


>gi|82701147|ref|YP_410713.1| NusB antitermination factor [Nitrosospira multiformis ATCC 25196]
 gi|119390789|sp|Q2YD50|NUSB_NITMU RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|82409212|gb|ABB73321.1| NusB antitermination factor [Nitrosospira multiformis ATCC 25196]
          Length = 158

 Score = 60.5 bits (145), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 44/142 (30%), Positives = 68/142 (47%), Gaps = 13/142 (9%)

Query: 15  RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74
           RR +AR  A+Q LYQ  + G S   I ++        DTE      +   D E+F  ++H
Sbjct: 20  RRRLARELALQGLYQWCVAGGSAGTIEAQLR------DTE-----EFPKTDEEYFSRLLH 68

Query: 75  GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134
           GV+ +   ++  I  CL     F+ L  +  SIL  G  EL     +P   +I+E V +A
Sbjct: 69  GVLMQAPELEKEIQPCLDR--PFNELSPVEISILLLGAYELERHPEIPYRAVINEAVELA 126

Query: 135 HDFFYGDEPKFINAVLDKVSRK 156
             +      K++N VLDK++ K
Sbjct: 127 KAYGGTHGHKYVNGVLDKLAVK 148


>gi|170725747|ref|YP_001759773.1| transcription antitermination protein NusB [Shewanella woodyi ATCC
           51908]
 gi|238688678|sp|B1KJK5|NUSB_SHEWM RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|169811094|gb|ACA85678.1| NusB antitermination factor [Shewanella woodyi ATCC 51908]
          Length = 134

 Score = 60.1 bits (144), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 46/148 (31%), Positives = 75/148 (50%), Gaps = 15/148 (10%)

Query: 10  LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF 69
           +K S RR   RLA VQA+Y   + G +  ++  E+E   F  + ++D       +D+ +F
Sbjct: 1   MKPSERRKARRLA-VQAIYSWQLSGNNIADV--EHE---FLTEQKID------GIDVTYF 48

Query: 70  RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISE 129
           R ++ G   ++  ID LI+  +     +  +  I  ++LR    EL     VP +V I+E
Sbjct: 49  RELLSGTATKQAQIDELITPHIER--PYDEVSPIEKAVLRLATYELTFRKDVPYKVAINE 106

Query: 130 YVCIAHDFFYGDEPKFINAVLDK-VSRK 156
            + +A  F   D  KF+N +LDK V RK
Sbjct: 107 AIELAKAFGAEDGHKFVNGILDKIVGRK 134


>gi|332534974|ref|ZP_08410792.1| transcription termination protein NusB [Pseudoalteromonas
           haloplanktis ANT/505]
 gi|332035592|gb|EGI72084.1| transcription termination protein NusB [Pseudoalteromonas
           haloplanktis ANT/505]
          Length = 136

 Score = 60.1 bits (144), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 46/143 (32%), Positives = 72/143 (50%), Gaps = 14/143 (9%)

Query: 10  LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF 69
           +K + RR  AR+ A+QA+Y   I G    +I           + ++ +E+    +D+E+F
Sbjct: 1   MKPAARRK-ARILALQAVYSWQISGNLIADI-----------EQQMLIETDVTKIDVEYF 48

Query: 70  RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISE 129
           + +  GV    + +D  +S  LT    F  LDM+  +ILR    EL     VP +V I+E
Sbjct: 49  KDLATGVAVNYKQLDEAVSPHLTR--PFDDLDMVERAILRLSSYELKFREDVPYKVAINE 106

Query: 130 YVCIAHDFFYGDEPKFINAVLDK 152
            + +A  F   D  KF+N VLDK
Sbjct: 107 GIELAKIFGAEDSHKFVNGVLDK 129


>gi|270157438|ref|ZP_06186095.1| transcription antitermination factor NusB [Legionella longbeachae
           D-4968]
 gi|289164170|ref|YP_003454308.1| N utilization substance protein B homolog [Legionella longbeachae
           NSW150]
 gi|269989463|gb|EEZ95717.1| transcription antitermination factor NusB [Legionella longbeachae
           D-4968]
 gi|288857343|emb|CBJ11171.1| putative N utilization substance protein B homolog [Legionella
           longbeachae NSW150]
          Length = 147

 Score = 60.1 bits (144), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 38/138 (27%), Positives = 73/138 (52%), Gaps = 13/138 (9%)

Query: 19  ARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMD 78
           AR  A+QALYQ  + G    EI +++         ++D       VD+++F  ++HGV +
Sbjct: 12  ARKLALQALYQWLMAGTEVCEIEAQFRVI-----NKMD------KVDVDYFCRLLHGVPE 60

Query: 79  RKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFF 138
               ++  I+  L  +   S L+ I  ++LR G  EL+ C  +P +V++ E + +  +F 
Sbjct: 61  HVASLETSITPFLDRE--ISALNPIELTVLRLGSFELLYCPEIPYKVVLDEAISLTKEFG 118

Query: 139 YGDEPKFINAVLDKVSRK 156
             D  +++N VL+ ++R+
Sbjct: 119 SQDGYRYVNGVLNNLARQ 136


>gi|116748821|ref|YP_845508.1| NusB antitermination factor [Syntrophobacter fumaroxidans MPOB]
 gi|166215725|sp|A0LI21|NUSB_SYNFM RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|116697885|gb|ABK17073.1| NusB antitermination factor [Syntrophobacter fumaroxidans MPOB]
          Length = 151

 Score = 60.1 bits (144), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 41/146 (28%), Positives = 68/146 (46%), Gaps = 20/146 (13%)

Query: 15  RRGIARLAAVQALYQIDIIGCSTTEIISEY-------ETYRFCADTELDVESVYLHVDLE 67
           RR  +R  A+Q LYQ+++      E +  Y       E +R  A+     E         
Sbjct: 3   RRRRSREMALQVLYQMEMAVLPPEEALGLYYQLFDDDEKHRVPAEVRPFAEE-------- 54

Query: 68  WFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVII 127
               I+ GV   +  ID +I+S  +E W  +R+ ++  +ILR  V E++ C  +P +V I
Sbjct: 55  ----IVRGVSLHRARIDEMITSA-SEHWRLARMSLVDRNILRIAVFEMLFCFDIPPKVSI 109

Query: 128 SEYVCIAHDFFYGDEPKFINAVLDKV 153
           +E + +   F   D   FIN +LD +
Sbjct: 110 NEAIDLGKTFGSPDSGAFINGILDHI 135


>gi|315646327|ref|ZP_07899447.1| NusB antitermination factor [Paenibacillus vortex V453]
 gi|315278526|gb|EFU41842.1| NusB antitermination factor [Paenibacillus vortex V453]
          Length = 152

 Score = 60.1 bits (144), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 43/147 (29%), Positives = 73/147 (49%), Gaps = 18/147 (12%)

Query: 15  RRGIARLAAVQALYQIDIIGCSTTEIIS--------EYETYRFCADTELDVESVYLHVDL 66
           +R +AR   VQ+LYQ+++    + E +S        E ET R   D E+ ++   L    
Sbjct: 2   KRRVAREIVVQSLYQMEMNEVDSMEAVSMLLSEAAEENETERVIGD-EVQMKEYVLQ--- 57

Query: 67  EWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVI 126
                +++G  + K+ ID L++  L + W  SRL  +   ILR  V EL     VP +V 
Sbjct: 58  -----LVNGTWESKESIDELLAHYL-KGWQVSRLSRVDRQILRLAVYELSSREDVPGKVA 111

Query: 127 ISEYVCIAHDFFYGDEPKFINAVLDKV 153
           ++E + ++  F   +  KF+N VL ++
Sbjct: 112 VNEAIELSKHFGTDESGKFVNGVLGRM 138


>gi|108757895|ref|YP_632923.1| transcription antitermination factor NusB [Myxococcus xanthus DK
           1622]
 gi|119390787|sp|Q1D350|NUSB_MYXXD RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|108461775|gb|ABF86960.1| transcription antitermination factor NusB [Myxococcus xanthus DK
           1622]
          Length = 140

 Score = 60.1 bits (144), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 41/140 (29%), Positives = 70/140 (50%), Gaps = 10/140 (7%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVD-LEWFRVIIH 74
           R   R  A+QALYQ+++   +T E +   E+    A+     ES     D +++ R ++ 
Sbjct: 4   RRTGRERALQALYQLEMATATTAEAL---ESAWSAAE-----ESNKRDPDAVKFARELVE 55

Query: 75  GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134
           GV   +  ID LI    +  W   R+  I  ++LR G+ EL     +P +V I+E V + 
Sbjct: 56  GVQSHRDEIDQLIERH-SHNWRLDRMSRIDRNVLRLGIFELKYRPDIPRKVSINEAVELG 114

Query: 135 HDFFYGDEPKFINAVLDKVS 154
            +F   +   F+N +LD+V+
Sbjct: 115 KNFGNEESSAFVNGLLDRVA 134


>gi|310829051|ref|YP_003961408.1| antitermination protein NusB [Eubacterium limosum KIST612]
 gi|308740785|gb|ADO38445.1| antitermination protein NusB [Eubacterium limosum KIST612]
          Length = 152

 Score = 60.1 bits (144), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 40/135 (29%), Positives = 71/135 (52%), Gaps = 3/135 (2%)

Query: 20  RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79
           R  A++ ++QID       E+ +  + + F    + D E     +   + + +I+  ++ 
Sbjct: 11  RELALRGIFQIDF-HAEDAELDTSLKNF-FELAGQGDPEDEVSGMTGGYAKKVINAALEN 68

Query: 80  KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139
           +  ID LI+S L E W FSR+  +  +ILR GV EL+    VP EV I+E V +A  +  
Sbjct: 69  QGAIDALIASHLKETWDFSRVPKMEKAILRLGVTELLYT-KVPKEVAINEAVELAKKYAS 127

Query: 140 GDEPKFINAVLDKVS 154
            +   +IN +L++V+
Sbjct: 128 EESKTYINGILNRVA 142


>gi|42527164|ref|NP_972262.1| transcription antitermination protein NusB [Treponema denticola
           ATCC 35405]
 gi|81570229|sp|Q73M53|NUSB_TREDE RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|41817588|gb|AAS12173.1| N utilization substance protein B [Treponema denticola ATCC 35405]
          Length = 136

 Score = 60.1 bits (144), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 41/147 (27%), Positives = 70/147 (47%), Gaps = 12/147 (8%)

Query: 10  LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF 69
           + +  RRG  R+ A QAL   D+ G     ++ +   + +  +  +   + YL       
Sbjct: 1   MSVGRRRG--RILAFQALVAWDVGGA----VLDDLLNFSWQNEDSIKDPNGYLFP----- 49

Query: 70  RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISE 129
           ++++ G ++    ID +I   L + W   RL+ +  +ILR  V  LI     P  ++I E
Sbjct: 50  KMMVLGTIENITEIDKVIQENL-DNWVIDRLNSVDKAILRLSVYSLIYQKDTPPPIVIDE 108

Query: 130 YVCIAHDFFYGDEPKFINAVLDKVSRK 156
            + +A DF   D  KF+NAVLD +  K
Sbjct: 109 AINLAKDFGTDDSYKFVNAVLDSIKNK 135


>gi|256827876|ref|YP_003156604.1| NusB antitermination factor [Desulfomicrobium baculatum DSM 4028]
 gi|256577052|gb|ACU88188.1| NusB antitermination factor [Desulfomicrobium baculatum DSM 4028]
          Length = 154

 Score = 60.1 bits (144), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 38/146 (26%), Positives = 73/146 (50%), Gaps = 11/146 (7%)

Query: 12  LSHRRGIARLAAVQALYQIDIIG--CSTTEIISEYETYRFCADTELDVESVYLHVDLEWF 69
           ++H R   R  A Q +Y + + G   S   +I  ++   F  + E D+E    +    W 
Sbjct: 1   MTHNRRHQRRFAFQVIYSL-VFGQKMSKDSLIKSFDN--FWTEEEFDMERQDSYA---W- 53

Query: 70  RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISE 129
             ++ GV D    ID +I+   ++ W  +R+  +  +ILR  + E++ C  +P++V ++E
Sbjct: 54  -TLVEGVFDNYDSIDEIITQH-SQHWKLNRIAKVELTILRLSLFEMLFCPDIPIKVAMNE 111

Query: 130 YVCIAHDFFYGDEPKFINAVLDKVSR 155
            + +A DF   +   F+N VLD  ++
Sbjct: 112 AIELAKDFGDDNSKTFVNGVLDAAAK 137


>gi|30022264|ref|NP_833895.1| transcription antitermination protein NusB [Bacillus cereus ATCC
           14579]
 gi|206971091|ref|ZP_03232042.1| N utilization substance protein B [Bacillus cereus AH1134]
 gi|218233314|ref|YP_002368985.1| transcription antitermination protein NusB [Bacillus cereus B4264]
 gi|218899346|ref|YP_002447757.1| N utilization substance protein B [Bacillus cereus G9842]
 gi|228902700|ref|ZP_04066847.1| N utilization substance protein B [Bacillus thuringiensis IBL 4222]
 gi|228910018|ref|ZP_04073838.1| N utilization substance protein B [Bacillus thuringiensis IBL 200]
 gi|228922937|ref|ZP_04086231.1| N utilization substance protein B [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
 gi|228967223|ref|ZP_04128259.1| N utilization substance protein B [Bacillus thuringiensis serovar
           sotto str. T04001]
 gi|228974275|ref|ZP_04134844.1| N utilization substance protein B [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|296504671|ref|YP_003666371.1| transcription antitermination protein NusB [Bacillus thuringiensis
           BMB171]
 gi|39931865|sp|Q818R4|NUSB_BACCR RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|226737439|sp|B7IXH3|NUSB_BACC2 RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|226737885|sp|B7HB53|NUSB_BACC4 RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|29897821|gb|AAP11096.1| N utilization substance protein B [Bacillus cereus ATCC 14579]
 gi|206733863|gb|EDZ51034.1| N utilization substance protein B [Bacillus cereus AH1134]
 gi|218161271|gb|ACK61263.1| N utilization substance protein B [Bacillus cereus B4264]
 gi|218545985|gb|ACK98379.1| N utilization substance protein B [Bacillus cereus G9842]
 gi|228785325|gb|EEM33335.1| N utilization substance protein B [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228792592|gb|EEM40158.1| N utilization substance protein B [Bacillus thuringiensis serovar
           sotto str. T04001]
 gi|228836708|gb|EEM82055.1| N utilization substance protein B [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
 gi|228849535|gb|EEM94369.1| N utilization substance protein B [Bacillus thuringiensis IBL 200]
 gi|228856887|gb|EEN01400.1| N utilization substance protein B [Bacillus thuringiensis IBL 4222]
 gi|296325723|gb|ADH08651.1| transcription antitermination protein NusB [Bacillus thuringiensis
           BMB171]
 gi|326941963|gb|AEA17859.1| transcription antitermination protein [Bacillus thuringiensis
           serovar chinensis CT-43]
          Length = 130

 Score = 60.1 bits (144), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 47/142 (33%), Positives = 68/142 (47%), Gaps = 18/142 (12%)

Query: 15  RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74
           +R  AR  A+QALYQ+DI G        E E      +T  + E        E+   ++ 
Sbjct: 2   KRRTARERAMQALYQMDITG--------ELEPKVAVENTLDEGEETN-----EFLESLVV 48

Query: 75  GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134
           G ++ K+ ID  I   L +KW   R+ ++  SILR  V E+     +P  V I+E + IA
Sbjct: 49  GFVENKEAIDEAIRQNL-KKWKLERISIVDRSILRVAVYEMKYMEEIPHNVTINEAIEIA 107

Query: 135 HDFFYGDEP--KFINAVLDKVS 154
             F  GDE   +FIN VL  + 
Sbjct: 108 KTF--GDEESRRFINGVLSNIK 127


>gi|225873914|ref|YP_002755373.1| transcription antitermination factor NusB [Acidobacterium
           capsulatum ATCC 51196]
 gi|225793742|gb|ACO33832.1| transcription antitermination factor NusB [Acidobacterium
           capsulatum ATCC 51196]
          Length = 144

 Score = 60.1 bits (144), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 43/147 (29%), Positives = 77/147 (52%), Gaps = 11/147 (7%)

Query: 10  LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF 69
           +  + +R  +R  A+Q L+Q D+ G  T + + +  T+ + A  E++ ++     DL  F
Sbjct: 1   MTTTGKRRKSRELAMQMLFQADV-GKQTPDDVRK--TF-WEAREEVEPDTRGFAEDL--F 54

Query: 70  RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISE 129
           RV     M+R++ ID LI    +  W  SR+  +  ++LR  + EL+     P  +II+E
Sbjct: 55  RV----AMNREEEIDTLIEQH-SANWKLSRMAAVDRNVLRMAIAELLGFPGTPAPIIINE 109

Query: 130 YVCIAHDFFYGDEPKFINAVLDKVSRK 156
            + IA  +   +   F+N VLD +SR+
Sbjct: 110 ALEIARRYSAPESVNFLNGVLDAISRQ 136


>gi|90579826|ref|ZP_01235634.1| transcription antitermination protein NusB [Vibrio angustum S14]
 gi|330445271|ref|ZP_08308923.1| transcription antitermination factor NusB [Photobacterium
           leiognathi subsp. mandapamensis svers.1.1.]
 gi|90438711|gb|EAS63894.1| transcription antitermination protein NusB [Vibrio angustum S14]
 gi|328489462|dbj|GAA03420.1| transcription antitermination factor NusB [Photobacterium
           leiognathi subsp. mandapamensis svers.1.1.]
          Length = 156

 Score = 60.1 bits (144), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 45/155 (29%), Positives = 78/155 (50%), Gaps = 9/155 (5%)

Query: 10  LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYL---HVDL 66
           +K + RR  AR  AVQA+Y   +   +  +I   + +     + E   ++  L   H D+
Sbjct: 5   VKPAARRN-ARQFAVQAIYSWQLTKGNVADIEQHFLSGDKFEEEEHQADAPVLAAPHTDV 63

Query: 67  EWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVI 126
            +FR +  GV+   Q +D  +   L+       LD +  ++LR  + E+++   VP +V+
Sbjct: 64  SYFRDLFTGVVLSHQELDSKMRPYLSR--PLQDLDQMELALLRLAMYEMVKREDVPFKVV 121

Query: 127 ISEYVCIAHDFFYGDEPKFINAVLDKVS---RKEE 158
           I+E + +A  F   D  KF+N VLDK +   RKE+
Sbjct: 122 INEAIELAKLFGAEDSHKFVNGVLDKAAPTLRKEK 156


>gi|203287574|ref|YP_002222589.1| N-utilization substance protein B [Borrelia recurrentis A1]
 gi|201084794|gb|ACH94368.1| N-utilization substance protein B [Borrelia recurrentis A1]
          Length = 146

 Score = 60.1 bits (144), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 46/151 (30%), Positives = 75/151 (49%), Gaps = 15/151 (9%)

Query: 10  LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF 69
           + L H+   AR+ A Q +Y ID+  C   + I  ++ + F      +   + L  DL+ F
Sbjct: 3   MDLRHK---ARILAFQKIYSIDV-NCKAKDNI--FDIFSF------EENGIDLDGDLKLF 50

Query: 70  -RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLEL-IECHSVPVEVII 127
             V+++G  D  + ID LIS  ++  W   R+D +  +ILR  V  L  +   VP  VII
Sbjct: 51  YSVLVNGTYDNLESIDKLISG-ISLNWRLDRMDKVDLAILRMSVYSLKFQDLDVPKRVII 109

Query: 128 SEYVCIAHDFFYGDEPKFINAVLDKVSRKEE 158
            E + IA  +   +  KF+N +LD + +  E
Sbjct: 110 DEAILIAKKYGNKNSDKFVNGILDALLKDME 140


>gi|170717533|ref|YP_001784622.1| transcription antitermination protein NusB [Haemophilus somnus
           2336]
 gi|189035891|sp|B0UU23|NUSB_HAES2 RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|168825662|gb|ACA31033.1| NusB antitermination factor [Haemophilus somnus 2336]
          Length = 144

 Score = 60.1 bits (144), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 49/144 (34%), Positives = 72/144 (50%), Gaps = 12/144 (8%)

Query: 11  KLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFR 70
           K+S RR  AR  AVQ LY   I   S  EI        F  D + +++ V    D+ +FR
Sbjct: 7   KISPRRR-ARECAVQNLYSWAISKNSPEEI-----ELNFIVDQDNEMKGV----DMPYFR 56

Query: 71  VIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEY 130
            + H  ++  + ID  ++  L        LD I C+ILR  V EL     VP +V+I+E 
Sbjct: 57  KLFHQTINHVETIDSTMAPYLDR--DNVELDPIECAILRLAVYELKFELDVPYKVVINEA 114

Query: 131 VCIAHDFFYGDEPKFINAVLDKVS 154
           + +A  F   +  K+IN VLDK++
Sbjct: 115 IEVAKVFGAEESHKYINGVLDKIA 138


>gi|239827671|ref|YP_002950295.1| transcription antitermination protein NusB [Geobacillus sp. WCH70]
 gi|239807964|gb|ACS25029.1| NusB antitermination factor [Geobacillus sp. WCH70]
          Length = 133

 Score = 59.7 bits (143), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 42/140 (30%), Positives = 66/140 (47%), Gaps = 16/140 (11%)

Query: 15  RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74
           +R  AR  A+QAL+Q+D+       I  E          E+D           + R ++ 
Sbjct: 3   KRHEAREKALQALFQVDV-----GHIPPEEALQNVTGGKEVD----------PFLRQLVI 47

Query: 75  GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134
           GV + ++ ID L+ + L EKW+  R+  +  +ILR    E+     VPV+V + E V +A
Sbjct: 48  GVTEHQEEIDALLRANL-EKWTLERVANVDRAILRMATYEMKYVDDVPVKVSLDEAVELA 106

Query: 135 HDFFYGDEPKFINAVLDKVS 154
             F      +F+N VL KV 
Sbjct: 107 KKFGDTKSGRFVNGVLSKVK 126


>gi|194333302|ref|YP_002015162.1| NusB antitermination factor [Prosthecochloris aestuarii DSM 271]
 gi|238693314|sp|B4S517|NUSB_PROA2 RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|194311120|gb|ACF45515.1| NusB antitermination factor [Prosthecochloris aestuarii DSM 271]
          Length = 168

 Score = 59.7 bits (143), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 45/155 (29%), Positives = 76/155 (49%), Gaps = 15/155 (9%)

Query: 13  SHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVI 72
           +HRR I R   VQALY +D+    T        T     D +           + +F+ +
Sbjct: 3   AHRRHI-REKIVQALYTLDVRDTDTATAGDWLITPEISKDPKA----------IRFFKQL 51

Query: 73  IHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVC 132
           +  ++D ++ ID  IS   T  W  SR+ +I  +ILR  + E++    +P +V I+E + 
Sbjct: 52  LGAIVDNREEIDQYISKH-TFNWDMSRIAIIDKNILRMAMAEILYFEDIPPKVSINEAIE 110

Query: 133 IAHDFFYGDE-PKFINAVLDKVSRKEEIKRSGCVS 166
           IA  F   D+  KF+N +LD V    ++ +SG ++
Sbjct: 111 IAKKFNSTDKSSKFVNGILDAVY--NDLNKSGKIN 143


>gi|289675585|ref|ZP_06496475.1| transcription antitermination protein NusB [Pseudomonas syringae
           pv. syringae FF5]
          Length = 127

 Score = 59.7 bits (143), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 43/135 (31%), Positives = 65/135 (48%), Gaps = 20/135 (14%)

Query: 2   TIQDNKKDLK-------LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTE 54
           T Q N +D K        S +R  AR  A QALYQ  + G S  EI +++          
Sbjct: 6   TDQFNPRDAKSPEAAKGKSAKRREARQMATQALYQWHMAGHSLNEIEAQFR--------- 56

Query: 55  LDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLE 114
             V++ + +VD  +F  ++HGV   K  ID  +S CL    +   LD +  ++LR    E
Sbjct: 57  --VDNDFSNVDGTYFHELLHGVATNKTEIDTALSPCL--DLTIEELDPVELAVLRLSTFE 112

Query: 115 LIECHSVPVEVIISE 129
           L++   VP  V+I+E
Sbjct: 113 LLKRIDVPYRVVINE 127


>gi|225619886|ref|YP_002721143.1| transcription antitermination protein NusB [Brachyspira
           hyodysenteriae WA1]
 gi|225214705|gb|ACN83439.1| transcription antitermination protein NusB [Brachyspira
           hyodysenteriae WA1]
          Length = 181

 Score = 59.7 bits (143), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 49/158 (31%), Positives = 78/158 (49%), Gaps = 17/158 (10%)

Query: 4   QDNKKDLKLSH--RRGIARLAAVQALYQIDIIGCSTT--EIISEYETYRFCADTELDVES 59
           ++N KDL LS    R  AR+ AV +LY  +I     T  EI+S      F  D ++  E+
Sbjct: 35  KENIKDLDLSSYGARRQARIYAVMSLYSYEINDRKETINEILS------FDYDKKI-PEN 87

Query: 60  VYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECH 119
           ++     E+ R ++ G ++  + ID LI    +  W   R+  +  SI+R  +  LI   
Sbjct: 88  IF-----EFTRTLVEGTINNLERIDNLIEKY-SNNWDIKRIQYVDKSIIRMSIYSLIFLK 141

Query: 120 SVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKE 157
            +P  V+I E V I+  F   D  KF+N +LD +  K+
Sbjct: 142 DIPKSVVIDEAVEISKIFSDKDSYKFVNGILDGIQEKD 179


>gi|311693386|gb|ADP96259.1| transcription antitermination protein NusB [marine bacterium HP15]
          Length = 158

 Score = 59.7 bits (143), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 42/136 (30%), Positives = 68/136 (50%), Gaps = 13/136 (9%)

Query: 19  ARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMD 78
           AR  A+Q LYQ      + ++I +E     F  D ++        VDL +FR ++ GV  
Sbjct: 25  ARALAMQGLYQRHFSKTAISDIEAE-----FMVDNDMS------KVDLLYFRDLLRGVHR 73

Query: 79  RKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFF 138
            +  +D LI   L        +D +  +I+R G  EL     VP +V+I+E + +A  F 
Sbjct: 74  EQGELDKLIEPFLDR--PIKEVDPVELAIVRLGAYELKHRLDVPYKVVINEGIEMAKRFG 131

Query: 139 YGDEPKFINAVLDKVS 154
             +  KF+N++LDK+S
Sbjct: 132 GTEGHKFVNSILDKLS 147


>gi|91205934|ref|YP_538289.1| transcription antitermination protein NusB [Rickettsia bellii
           RML369-C]
 gi|157826705|ref|YP_001495769.1| transcription antitermination protein NusB [Rickettsia bellii OSU
           85-389]
 gi|119390813|sp|Q1RHG4|NUSB_RICBR RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|166215711|sp|A8GV61|NUSB_RICB8 RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|91069478|gb|ABE05200.1| N utilization substance protein B [Rickettsia bellii RML369-C]
 gi|157802009|gb|ABV78732.1| transcription antitermination protein NusB [Rickettsia bellii OSU
           85-389]
          Length = 156

 Score = 59.7 bits (143), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 30/110 (27%), Positives = 64/110 (58%)

Query: 49  FCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSIL 108
           +  DT +    + + + +  F++++  V +    ID +IS+ L    + + + ++L ++L
Sbjct: 42  YRNDTSMTDSPIKISLTISHFKMLVKLVFENIDKIDEIISNHLVNDKNQNHIPILLQALL 101

Query: 109 RAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEE 158
           R+G+ EL+    +P +VII+EY  IA+D     E  F+N++LDK++ + +
Sbjct: 102 RSGICELLFFPDIPTKVIINEYTDIANDMLNDHEIGFVNSILDKIAHENK 151


>gi|203284032|ref|YP_002221772.1| N-utilization substance protein B [Borrelia duttonii Ly]
 gi|201083475|gb|ACH93066.1| N-utilization substance protein B [Borrelia duttonii Ly]
          Length = 146

 Score = 59.7 bits (143), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 46/151 (30%), Positives = 75/151 (49%), Gaps = 15/151 (9%)

Query: 10  LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF 69
           + L H+   AR+ A Q +Y ID+  C   + I  ++ + F      +   + L  DL+ F
Sbjct: 3   MDLRHK---ARVLAFQKIYSIDV-NCKAKDNI--FDIFSF------EENGIDLDGDLKLF 50

Query: 70  -RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLEL-IECHSVPVEVII 127
             V+++G  D  + ID LIS  ++  W   R+D +  +ILR  V  L  +   VP  VII
Sbjct: 51  YSVLVNGTYDNLESIDKLISG-ISLNWRLDRMDKVDLAILRMSVYSLKFQDLDVPKRVII 109

Query: 128 SEYVCIAHDFFYGDEPKFINAVLDKVSRKEE 158
            E + IA  +   +  KF+N +LD + +  E
Sbjct: 110 DEAILIAKKYGNKNSDKFVNGILDALLKDME 140


>gi|172056940|ref|YP_001813400.1| NusB antitermination factor [Exiguobacterium sibiricum 255-15]
 gi|171989461|gb|ACB60383.1| NusB antitermination factor [Exiguobacterium sibiricum 255-15]
          Length = 141

 Score = 59.7 bits (143), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 45/156 (28%), Positives = 73/156 (46%), Gaps = 30/156 (19%)

Query: 15  RRGIARLAAVQALYQIDIIGCSTTEII------SEYETYRFCADTELDVESVYLHVDLEW 68
           +R +AR  AVQ+L+Q+++   S  E I       EY+T+                     
Sbjct: 3   KRHMARELAVQSLFQMELSDLSAQEAIEFAVEGKEYDTF--------------------- 41

Query: 69  FRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIIS 128
              ++ GV   K  ID  + + L   WSF R+  I  +ILR  V EL+    +PV V I+
Sbjct: 42  VTRLVEGVEANKPEIDQKLRAALV-NWSFERIGNIERTILRLAVYELLFEAKIPVRVTIN 100

Query: 129 EYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRSGC 164
           E + +   F   +  K +N VL KV+  +E++++G 
Sbjct: 101 EAIELTKAFADEEATKIVNGVLGKVA--QEVEQNGL 134


>gi|163750010|ref|ZP_02157254.1| transcription antitermination protein NusB [Shewanella benthica
           KT99]
 gi|161330284|gb|EDQ01265.1| transcription antitermination protein NusB [Shewanella benthica
           KT99]
          Length = 134

 Score = 59.7 bits (143), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 48/148 (32%), Positives = 73/148 (49%), Gaps = 15/148 (10%)

Query: 10  LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF 69
           +K S RR   RLA VQA+Y   + G +  ++  E+E   F  + ++D       +D+ +F
Sbjct: 1   MKPSERRKARRLA-VQAIYSWQLSGNNIADV--EHE---FLTEQKID------GIDVAYF 48

Query: 70  RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISE 129
           R +  G   +   ID LI   +     F+ +  I  +ILR    EL     VP +V I+E
Sbjct: 49  RELFTGTTTKSAQIDELIIPHVER--PFAEVSPIEKAILRMATYELTFRKDVPYKVAINE 106

Query: 130 YVCIAHDFFYGDEPKFINAVLDK-VSRK 156
            + +A  F   D  KF+N +LDK V RK
Sbjct: 107 AIELAKTFGAEDGHKFVNGILDKIVGRK 134


>gi|257792277|ref|YP_003182883.1| NusB antitermination factor [Eggerthella lenta DSM 2243]
 gi|257476174|gb|ACV56494.1| NusB antitermination factor [Eggerthella lenta DSM 2243]
          Length = 195

 Score = 59.7 bits (143), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 43/143 (30%), Positives = 71/143 (49%), Gaps = 14/143 (9%)

Query: 14  HRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVII 73
           H R  AR AA+Q LY        T+EI  E        ++ LD +        E+   ++
Sbjct: 6   HERTSARRAALQVLY--------TSEITDESPAAIAEGNSRLDEDGPLP----EYALKLV 53

Query: 74  HGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCI 133
            GV   +  ID  +++  +E WS +R+ ++  SILR    E++    VP  V I+E V +
Sbjct: 54  LGVESHRCAIDNHLAAT-SENWSLARMPIVDRSILRLATFEMMYIDDVPTSVTINEAVEL 112

Query: 134 AHDFFYGDEP-KFINAVLDKVSR 155
           A DF   DE  +F+N +L ++++
Sbjct: 113 AKDFGGEDESHRFVNGILGRIAK 135


>gi|85858025|ref|YP_460227.1| transcription termination factor NusB [Syntrophus aciditrophicus
           SB]
 gi|119390838|sp|Q2LQK4|NUSB_SYNAS RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|85721116|gb|ABC76059.1| transcription termination factor NusB [Syntrophus aciditrophicus
           SB]
          Length = 161

 Score = 59.7 bits (143), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 40/142 (28%), Positives = 66/142 (46%), Gaps = 12/142 (8%)

Query: 15  RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74
           +R IAR  A+Q LY ++++     E I   E Y    +  +D           +  ++I 
Sbjct: 14  QRRIAREIALQVLYSLEVVEMEAGEAI---ELYWAHYEAPMDARP--------FSSLLIE 62

Query: 75  GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134
           G    +  ID LI  C +  WS +R+  +  SILR  V EL  C  +P +V ++E + + 
Sbjct: 63  GAWKHRDQIDSLIGGC-SANWSIARMSKVDKSILRMAVFELCFCEDIPPKVTMNEAIDLG 121

Query: 135 HDFFYGDEPKFINAVLDKVSRK 156
             +   +   FIN +LD +  K
Sbjct: 122 KVYGSENSGSFINGILDALYAK 143


>gi|158522086|ref|YP_001529956.1| NusB antitermination factor [Desulfococcus oleovorans Hxd3]
 gi|226738897|sp|A8ZTU6|NUSB_DESOH RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|158510912|gb|ABW67879.1| NusB antitermination factor [Desulfococcus oleovorans Hxd3]
          Length = 154

 Score = 59.3 bits (142), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 39/144 (27%), Positives = 71/144 (49%), Gaps = 11/144 (7%)

Query: 13  SHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVI 72
           S RR  +R  A+Q L+  D+      +  +  E   FCA   L  E  + H     F  +
Sbjct: 3   SRRR--SRELALQFLFSYDLNAAGAGDFDAWMED--FCARFNLS-EKNFPH-----FFTL 52

Query: 73  IHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVC 132
             GV +R + ++ L++   +E W  SR+  +  +++R  + E++ C  VP  V I+E + 
Sbjct: 53  AQGVKNRWEKLNDLLAES-SEHWKLSRMSGVDRNVMRIAIFEMLYCDDVPPRVAINEAIE 111

Query: 133 IAHDFFYGDEPKFINAVLDKVSRK 156
           I   +   +   FIN VLD+++++
Sbjct: 112 IGKKYGTDESGAFINGVLDRINKE 135


>gi|229847453|ref|ZP_04467550.1| transcription antitermination protein NusB [Haemophilus influenzae
           7P49H1]
 gi|229809594|gb|EEP45321.1| transcription antitermination protein NusB [Haemophilus influenzae
           7P49H1]
          Length = 144

 Score = 59.3 bits (142), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 45/148 (30%), Positives = 71/148 (47%), Gaps = 13/148 (8%)

Query: 7   KKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDL 66
           +K +K    R  AR   VQALY   + G +  ++        F  D ++D       VD 
Sbjct: 4   QKQVKKPSARRRARECTVQALYSWAVSGNTAEQV-----ELAFVLDQDMD------GVDK 52

Query: 67  EWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVI 126
            +FR +    ++  + +D  IS  +    +F  LD I  +ILR  V EL     VP +V+
Sbjct: 53  PYFRKLFRQTIENIETVDFSISPYIDR--TFDELDPIETAILRLAVYELRFELDVPYKVV 110

Query: 127 ISEYVCIAHDFFYGDEPKFINAVLDKVS 154
           I+E + +A  F   +  K+IN VLDK++
Sbjct: 111 INEAIEVAKVFGADESHKYINGVLDKIA 138


>gi|42783301|ref|NP_980548.1| transcription antitermination protein NusB [Bacillus cereus ATCC
           10987]
 gi|81568850|sp|Q731B1|NUSB_BACC1 RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|42739229|gb|AAS43156.1| N utilization substance protein B [Bacillus cereus ATCC 10987]
          Length = 130

 Score = 59.3 bits (142), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 47/142 (33%), Positives = 68/142 (47%), Gaps = 18/142 (12%)

Query: 15  RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74
           +R  AR  A+QALYQ+DI G    +I  E  T     +T             E+   ++ 
Sbjct: 2   KRRTARERAMQALYQMDITGELEPKIAVE-NTLDEGEETN------------EFLESLVV 48

Query: 75  GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134
           G ++ K+ ID  I   L +KW   R+ ++  SILR  V E+     +P  V I+E + IA
Sbjct: 49  GFVENKEVIDEAIRQNL-KKWKLERISIVDRSILRVAVYEMKYMEEIPHNVTINEAIEIA 107

Query: 135 HDFFYGDEP--KFINAVLDKVS 154
             F  GDE   +FIN VL  + 
Sbjct: 108 KTF--GDEESRRFINGVLSNIK 127


>gi|15644510|ref|NP_229562.1| transcription antitermination protein NusB [Thermotoga maritima
           MSB8]
 gi|7387977|sp|Q9X286|NUSB_THEMA RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|52695948|pdb|1TZT|A Chain A, T. Maritima Nusb, P21
 gi|52695949|pdb|1TZT|B Chain B, T. Maritima Nusb, P21
 gi|52695950|pdb|1TZU|A Chain A, T. Maritima Nusb, P212121
 gi|52695951|pdb|1TZV|A Chain A, T. Maritima Nusb, P3121, Form 1
 gi|52695952|pdb|1TZW|A Chain A, T. Maritima Nusb, P3121, Form 2
 gi|52695953|pdb|1TZX|A Chain A, T. Maritima Nusb, P3221
 gi|52695954|pdb|1TZX|B Chain B, T. Maritima Nusb, P3221
 gi|4982344|gb|AAD36829.1|AE001815_3 N utilization substance protein B [Thermotoga maritima MSB8]
 gi|22859189|emb|CAD45556.1| N utilisation substance protein B [Expression vector
           pNCO113-TM-nusB]
          Length = 142

 Score = 59.3 bits (142), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 45/153 (29%), Positives = 73/153 (47%), Gaps = 26/153 (16%)

Query: 10  LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELD------VESVYLH 63
           +K   RR   RLA  +AL+Q                 + F  D +L+      ++  Y  
Sbjct: 1   MKTPRRR--MRLAVFKALFQ-----------------HEFRRDEDLEQILEEILDETYDK 41

Query: 64  VDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPV 123
              E  R  I G+ +    ID LIS  L EKWS +RL ++  ++LR    EL+    +P+
Sbjct: 42  KAKEDARRYIRGIKENLSMIDDLISRYL-EKWSLNRLSVVDRNVLRLATYELLFEKDIPI 100

Query: 124 EVIISEYVCIAHDFFYGDEPKFINAVLDKVSRK 156
           EV I E + IA  +   +  KF+N +LD+++++
Sbjct: 101 EVTIDEAIEIAKRYGTENSGKFVNGILDRIAKE 133


>gi|148826048|ref|YP_001290801.1| transcription antitermination protein NusB [Haemophilus influenzae
           PittEE]
 gi|166215690|sp|A5UCB7|NUSB_HAEIE RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|148716208|gb|ABQ98418.1| transcription antitermination protein NusB [Haemophilus influenzae
           PittEE]
 gi|309973183|gb|ADO96384.1| Transcription antitermination protein NusB [Haemophilus influenzae
           R2846]
          Length = 144

 Score = 59.3 bits (142), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 45/148 (30%), Positives = 71/148 (47%), Gaps = 13/148 (8%)

Query: 7   KKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDL 66
           +K +K    R  AR   VQALY   + G +  ++        F  D ++D       VD 
Sbjct: 4   QKQVKKPSARRRARECTVQALYSWAVSGNTAEQV-----ELAFVLDQDMD------GVDK 52

Query: 67  EWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVI 126
            +FR +    ++  + +D  IS  +    +F  LD I  +ILR  V EL     VP +V+
Sbjct: 53  PYFRKLFRQTIENIETVDFSISPYIDR--TFDELDPIETAILRLAVYELRFELDVPYKVV 110

Query: 127 ISEYVCIAHDFFYGDEPKFINAVLDKVS 154
           I+E + +A  F   +  K+IN VLDK++
Sbjct: 111 INEAIEVAKVFGADESHKYINGVLDKIA 138


>gi|224370206|ref|YP_002604370.1| NusB [Desulfobacterium autotrophicum HRM2]
 gi|259514822|sp|C0QKW6|NUSB_DESAH RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|223692923|gb|ACN16206.1| NusB [Desulfobacterium autotrophicum HRM2]
          Length = 143

 Score = 59.3 bits (142), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 42/145 (28%), Positives = 72/145 (49%), Gaps = 12/145 (8%)

Query: 19  ARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDV-ESVYLHVDLEWFRVIIHGVM 77
           AR  A+QALY  D+   S  E+++      FC++ E  + ES+       +F  ++ GV 
Sbjct: 7   ARELALQALYYFDVDKGSPDELLA-----LFCSNFEDRIDESIR-----PFFLDLVKGVT 56

Query: 78  DRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDF 137
             +  +D L++   +  W  SR+ ++  +I+R  + E+++   +P  V I+E V I   F
Sbjct: 57  QARAEVDDLMNRS-SSNWKVSRMPIVDRNIMRMAIFEMLKQPDIPPTVSINEAVEIGKRF 115

Query: 138 FYGDEPKFINAVLDKVSRKEEIKRS 162
                  FIN VLDK+   + I R 
Sbjct: 116 GTRGSGAFINGVLDKIRVLKNIDRG 140


>gi|169629920|ref|YP_001703569.1| transcription antitermination protein NusB [Mycobacterium abscessus
           ATCC 19977]
 gi|169241887|emb|CAM62915.1| Probable transcription antitermination factor NusB [Mycobacterium
           abscessus]
          Length = 173

 Score = 59.3 bits (142), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 31/82 (37%), Positives = 45/82 (54%), Gaps = 1/82 (1%)

Query: 72  IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
           + HGV +   HID LISS L + W+ +RL  +  +ILR  V EL+    VP  V + E V
Sbjct: 76  VAHGVTEHAAHIDELISSHL-QGWTLARLPAVDRAILRVAVWELLHAQDVPEVVAVDEAV 134

Query: 132 CIAHDFFYGDEPKFINAVLDKV 153
            +A      + P F+N VL ++
Sbjct: 135 ELAKQLSTDESPAFVNGVLGQL 156


>gi|170288851|ref|YP_001739089.1| NusB antitermination factor [Thermotoga sp. RQ2]
 gi|281412471|ref|YP_003346550.1| NusB antitermination factor [Thermotoga naphthophila RKU-10]
 gi|238688836|sp|B1LAQ8|NUSB_THESQ RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|170176354|gb|ACB09406.1| NusB antitermination factor [Thermotoga sp. RQ2]
 gi|281373574|gb|ADA67136.1| NusB antitermination factor [Thermotoga naphthophila RKU-10]
          Length = 142

 Score = 59.3 bits (142), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 45/153 (29%), Positives = 72/153 (47%), Gaps = 26/153 (16%)

Query: 10  LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELD------VESVYLH 63
           +K   RR   RLA  +AL+Q                 + F  D +L+      ++  Y  
Sbjct: 1   MKTPRRR--MRLAVFKALFQ-----------------HEFRRDEDLEQILEEILDETYDK 41

Query: 64  VDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPV 123
              E  R  I G+ +    ID LIS  L EKWS +RL  +  ++LR    EL+    +P+
Sbjct: 42  KAKEDARRYIRGIKENLPMIDNLISRYL-EKWSLNRLSAVDRNVLRLATYELLFEKDIPI 100

Query: 124 EVIISEYVCIAHDFFYGDEPKFINAVLDKVSRK 156
           EV I E + IA  +   +  KF+N +LD+++++
Sbjct: 101 EVTIDEAIEIAKRYGTENSGKFVNGILDRIAKE 133


>gi|296133218|ref|YP_003640465.1| NusB antitermination factor [Thermincola sp. JR]
 gi|296031796|gb|ADG82564.1| NusB antitermination factor [Thermincola potens JR]
          Length = 142

 Score = 59.3 bits (142), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 44/160 (27%), Positives = 74/160 (46%), Gaps = 31/160 (19%)

Query: 12  LSHRRGIARLAAVQALYQIDIIGCSTTE----IISEYE----TYRFCADTELDVESVYLH 63
           +S R+  AR AA+Q L+QI++ G    +    I SE+       +FC             
Sbjct: 1   MSRRK--AREAALQVLFQIEMAGVEEEKAYEYIFSEFNIGENAQKFC------------- 45

Query: 64  VDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPV 123
                 R ++ G +  + +ID +I     E W   R+  +  +I+R  + E++    VP 
Sbjct: 46  ------RELVQGTLRNRAYIDDIIREVSNE-WDLYRMANVDRNIIRMALYEMLFREDVPK 98

Query: 124 EVIISEYVCIAHDFFYGDEPKFINAVLDKVSRK-EEIKRS 162
            V I+E + +  DF   D  KFIN +L  V++  E+ KR+
Sbjct: 99  NVAINEAIELGKDFSTADSGKFINGILGYVAKNMEQFKRT 138


>gi|295399119|ref|ZP_06809101.1| NusB antitermination factor [Geobacillus thermoglucosidasius
           C56-YS93]
 gi|312110278|ref|YP_003988594.1| NusB antitermination factor [Geobacillus sp. Y4.1MC1]
 gi|294978585|gb|EFG54181.1| NusB antitermination factor [Geobacillus thermoglucosidasius
           C56-YS93]
 gi|311215379|gb|ADP73983.1| NusB antitermination factor [Geobacillus sp. Y4.1MC1]
          Length = 132

 Score = 59.3 bits (142), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 43/140 (30%), Positives = 65/140 (46%), Gaps = 16/140 (11%)

Query: 15  RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74
           +R  AR  A+QAL+QID+       I  E          E D           + R ++ 
Sbjct: 2   KRHEAREKALQALFQIDV-----GRIPPEEALQNVMGGEEAD----------SFLRQLVF 46

Query: 75  GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134
           GV + ++ ID L+ + L EKW+  R+  +  +ILR    E+     VPV+V + E V +A
Sbjct: 47  GVTEHQEEIDELLRANL-EKWTLERVANVDRAILRMAAYEMKYLDDVPVKVSLDEAVELA 105

Query: 135 HDFFYGDEPKFINAVLDKVS 154
             F      +F+N VL KV 
Sbjct: 106 KKFGDTKSGRFVNGVLSKVK 125


>gi|187931389|ref|YP_001891373.1| transcription antitermination factor NusB [Francisella tularensis
           subsp. mediasiatica FSC147]
 gi|187712298|gb|ACD30595.1| transcription antitermination factor NusB [Francisella tularensis
           subsp. mediasiatica FSC147]
          Length = 141

 Score = 59.3 bits (142), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 47/147 (31%), Positives = 71/147 (48%), Gaps = 13/147 (8%)

Query: 10  LKLSHR-RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEW 68
           +K + R R  ARL AVQALYQ  I   + +E+  +Y  Y   AD          + D + 
Sbjct: 1   MKTTARARNNARLYAVQALYQKKIADNTFSELKIQY--YADNADRH--------YTDWDL 50

Query: 69  FRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIIS 128
           F  +I  V   +  ID  I    +       ++ +  ++L+  + ELIEC   P +VII 
Sbjct: 51  FYRLIDAVKTNQDTIDKYIKENSSN--GVESINYVDYAVLQVAIAELIECLENPYQVIIK 108

Query: 129 EYVCIAHDFFYGDEPKFINAVLDKVSR 155
           EYV I +     +  KFINAVL  +++
Sbjct: 109 EYVGICYSMGTEEGYKFINAVLQNLAK 135


>gi|189485423|ref|YP_001956364.1| transcription antitermination factor NusB [uncultured Termite group
           1 bacterium phylotype Rs-D17]
 gi|170287382|dbj|BAG13903.1| transcription antitermination factor NusB [uncultured Termite group
           1 bacterium phylotype Rs-D17]
          Length = 142

 Score = 59.3 bits (142), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 38/140 (27%), Positives = 63/140 (45%), Gaps = 12/140 (8%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           R  AR  ++  LY +D        I + +  Y             Y    L+ F+    G
Sbjct: 4   RRKARECSLHMLYAVDNCNVPIESIYNSFAVY-------FPKGEAYRMFALDLFK----G 52

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
           V D K+ +D LI  C  + W   R+  +  +I+R    E++   ++P+ VII E V I+ 
Sbjct: 53  VCDNKEDLDSLIKQC-AKNWEIERMAAVDRNIIRLATYEIMATTNIPIRVIIDEAVEISK 111

Query: 136 DFFYGDEPKFINAVLDKVSR 155
            +   D  KF+N +LDK+ +
Sbjct: 112 KYSTKDSSKFVNGILDKLKK 131


>gi|149200420|ref|ZP_01877436.1| NusB antitermination factor [Lentisphaera araneosa HTCC2155]
 gi|149136489|gb|EDM24926.1| NusB antitermination factor [Lentisphaera araneosa HTCC2155]
          Length = 156

 Score = 59.3 bits (142), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 46/146 (31%), Positives = 67/146 (45%), Gaps = 8/146 (5%)

Query: 14  HRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF---R 70
           + R + R  A+Q LYQ DI          E E   F    E    +   H   + F   R
Sbjct: 8   NPRSLGRKWALQYLYQSDIAKLE----FQEEEFALFIDQIENAPSAPNEHESSKGFAFAR 63

Query: 71  VIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEY 130
            II GV+D+ + ID  I+    + W   R+     ++LR  V EL+E  S    VI++E 
Sbjct: 64  EIIQGVLDKVKEIDAYITEE-AKNWKIDRMATTDRNVLRIAVFELMEIKSNHPVVIVNEA 122

Query: 131 VCIAHDFFYGDEPKFINAVLDKVSRK 156
           V +A  F   D  KF+N + D ++RK
Sbjct: 123 VELAKTFGNTDSFKFVNGIGDTLARK 148


>gi|296269370|ref|YP_003652002.1| NusB antitermination factor [Thermobispora bispora DSM 43833]
 gi|296092157|gb|ADG88109.1| NusB antitermination factor [Thermobispora bispora DSM 43833]
          Length = 144

 Score = 59.3 bits (142), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 33/97 (34%), Positives = 56/97 (57%), Gaps = 4/97 (4%)

Query: 66  LEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEV 125
           LE+   ++ GV+  +  ID LIS+   + W+  R+  +  +ILRAG  E++    VP  V
Sbjct: 49  LEYTVTLVEGVVRHQDRIDELISTY-AQGWTLDRMPAVDRNILRAGTYEMLWSTDVPENV 107

Query: 126 IISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRS 162
           +ISE+V +A +    + P F+N +L   +R +E+K S
Sbjct: 108 VISEWVRLAAELSTDESPHFVNGLL---ARFKELKPS 141


>gi|16273216|ref|NP_439455.1| transcription antitermination protein NusB [Haemophilus influenzae
           Rd KW20]
 gi|145629373|ref|ZP_01785171.1| transcription antitermination protein NusB [Haemophilus influenzae
           22.1-21]
 gi|145633222|ref|ZP_01788953.1| transcription antitermination protein NusB [Haemophilus influenzae
           3655]
 gi|145638873|ref|ZP_01794481.1| transcription antitermination protein NusB [Haemophilus influenzae
           PittII]
 gi|148827000|ref|YP_001291753.1| transcription antitermination protein NusB [Haemophilus influenzae
           PittGG]
 gi|260581349|ref|ZP_05849165.1| transcription antitermination factor NusB [Haemophilus influenzae
           RdAW]
 gi|319776247|ref|YP_004138735.1| transcription antitermination protein [Haemophilus influenzae
           F3047]
 gi|319897123|ref|YP_004135318.1| transcription antitermination protein [Haemophilus influenzae
           F3031]
 gi|329123386|ref|ZP_08251950.1| transcription termination/antitermination factor NusB [Haemophilus
           aegyptius ATCC 11116]
 gi|1171874|sp|P45150|NUSB_HAEIN RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|166215691|sp|A5UF14|NUSB_HAEIG RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|1574763|gb|AAC22951.1| N utilization substance protein B (nusB) [Haemophilus influenzae Rd
           KW20]
 gi|144978216|gb|EDJ87980.1| transcription antitermination protein NusB [Haemophilus influenzae
           22.1-21]
 gi|144986068|gb|EDJ92658.1| transcription antitermination protein NusB [Haemophilus influenzae
           3655]
 gi|145271845|gb|EDK11754.1| transcription antitermination protein NusB [Haemophilus influenzae
           PittII]
 gi|148718242|gb|ABQ99369.1| transcription antitermination protein NusB [Haemophilus influenzae
           PittGG]
 gi|260092016|gb|EEW75963.1| transcription antitermination factor NusB [Haemophilus influenzae
           RdAW]
 gi|309750850|gb|ADO80834.1| Transcription antitermination protein NusB [Haemophilus influenzae
           R2866]
 gi|317432627|emb|CBY80988.1| transcription antitermination protein [Haemophilus influenzae
           F3031]
 gi|317450838|emb|CBY87062.1| transcription antitermination protein [Haemophilus influenzae
           F3047]
 gi|327470968|gb|EGF16423.1| transcription termination/antitermination factor NusB [Haemophilus
           aegyptius ATCC 11116]
          Length = 144

 Score = 59.3 bits (142), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 45/148 (30%), Positives = 71/148 (47%), Gaps = 13/148 (8%)

Query: 7   KKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDL 66
           +K +K    R  AR   VQALY   + G +  ++        F  D ++D       VD 
Sbjct: 4   QKQVKKPSARRRARECTVQALYSWAVSGNTAEQV-----ELAFVLDQDMD------GVDK 52

Query: 67  EWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVI 126
            +FR +    ++  + +D  IS  +    +F  LD I  +ILR  V EL     VP +V+
Sbjct: 53  PYFRKLFRQTIENIETVDFSISPYIDR--AFDELDPIETAILRLAVYELRFELDVPYKVV 110

Query: 127 ISEYVCIAHDFFYGDEPKFINAVLDKVS 154
           I+E + +A  F   +  K+IN VLDK++
Sbjct: 111 INEAIEVAKVFGADESHKYINGVLDKIA 138


>gi|91792506|ref|YP_562157.1| transcription antitermination protein NusB [Shewanella
           denitrificans OS217]
 gi|119390818|sp|Q12Q42|NUSB_SHEDO RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|91714508|gb|ABE54434.1| NusB antitermination factor [Shewanella denitrificans OS217]
          Length = 133

 Score = 59.3 bits (142), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 45/147 (30%), Positives = 72/147 (48%), Gaps = 14/147 (9%)

Query: 10  LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF 69
           +K S RR   RLA VQA+Y   +   +  ++  E     F  +  +D       VD+ +F
Sbjct: 1   MKPSERRKARRLA-VQAIYSWQLSKNNVADVEHE-----FITEQNID------GVDVAYF 48

Query: 70  RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISE 129
           R ++ GV  + + ID L+   L  K  F  +  +  +I+R    EL     VP +V I+E
Sbjct: 49  RELLAGVASKHEQIDDLLRPHLDRK--FEDVSPVEKAIVRLAGYELTFRKDVPYKVAINE 106

Query: 130 YVCIAHDFFYGDEPKFINAVLDKVSRK 156
            + +A  F   D  KF+N +LDK+ R+
Sbjct: 107 AIELAKAFGADDSHKFVNGLLDKLVRR 133


>gi|257055582|ref|YP_003133414.1| transcription antitermination factor NusB [Saccharomonospora
           viridis DSM 43017]
 gi|256585454|gb|ACU96587.1| transcription antitermination factor NusB [Saccharomonospora
           viridis DSM 43017]
          Length = 153

 Score = 59.3 bits (142), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 41/155 (26%), Positives = 73/155 (47%), Gaps = 18/155 (11%)

Query: 5   DNKKDLKLSHRRGI-----ARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVES 59
           +N+     + RRG      +R  AV+ LY+  +       ++SE    R  +    DV+ 
Sbjct: 2   NNESRASRTARRGTFSRRASRQRAVELLYEAALRKTDPATLMSE----RLGSP---DVDP 54

Query: 60  VYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECH 119
           +      ++   ++ GV + ++ ID L++    + WS  R+  +  ++LR G+ EL+   
Sbjct: 55  IS-----DYTITLVEGVSENRERIDELLAEY-AQGWSLERMPPVDLAVLRVGLYELLWLD 108

Query: 120 SVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVS 154
            VP  V I E V IA      D P+F+N VL ++ 
Sbjct: 109 DVPDPVAIDEAVGIAKQLSTDDSPRFVNGVLGRIG 143


>gi|119472104|ref|ZP_01614335.1| transcription termination factor [Alteromonadales bacterium TW-7]
 gi|119445124|gb|EAW26417.1| transcription termination factor [Alteromonadales bacterium TW-7]
          Length = 136

 Score = 59.3 bits (142), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 45/144 (31%), Positives = 73/144 (50%), Gaps = 14/144 (9%)

Query: 10  LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF 69
           +K + RR  AR+ A+QA+Y   + G +  +I           + ++ +E+    +D+E+F
Sbjct: 1   MKPAARRK-ARILALQAVYSWQLSGNAIADI-----------EQQMLIENDVTKIDVEYF 48

Query: 70  RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISE 129
           + +  GV    + +D  +S  LT    F  LDM+  +ILR    EL     VP +V I+E
Sbjct: 49  KDLASGVAVNYKLLDESVSPHLTR--PFDDLDMVERAILRLSSYELKFREDVPYKVAINE 106

Query: 130 YVCIAHDFFYGDEPKFINAVLDKV 153
            + +A  F   D  KF+N VLDK 
Sbjct: 107 GIELAKIFGAEDSHKFVNGVLDKA 130


>gi|229093241|ref|ZP_04224359.1| N utilization substance protein B [Bacillus cereus Rock3-42]
 gi|228690215|gb|EEL44009.1| N utilization substance protein B [Bacillus cereus Rock3-42]
          Length = 130

 Score = 59.3 bits (142), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 47/142 (33%), Positives = 68/142 (47%), Gaps = 18/142 (12%)

Query: 15  RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74
           +R  AR  A+QALYQ+DI G        E E      +T  + E        E+   ++ 
Sbjct: 2   KRRTARERAMQALYQMDITG--------ELEPKVAVENTLDEGEETN-----EFLESLVI 48

Query: 75  GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134
           G ++ K+ ID  I   L +KW   R+ ++  SILR  V E+     +P  V I+E + IA
Sbjct: 49  GFVENKEVIDEAIRQNL-KKWKLERISIVDRSILRVAVYEMKYMEEIPHNVTINEAIEIA 107

Query: 135 HDFFYGDEP--KFINAVLDKVS 154
             F  GDE   +FIN VL  + 
Sbjct: 108 KTF--GDEESRRFINGVLSNIK 127


>gi|260582481|ref|ZP_05850272.1| transcription antitermination factor NusB [Haemophilus influenzae
           NT127]
 gi|260094461|gb|EEW78358.1| transcription antitermination factor NusB [Haemophilus influenzae
           NT127]
          Length = 144

 Score = 59.3 bits (142), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 45/148 (30%), Positives = 71/148 (47%), Gaps = 13/148 (8%)

Query: 7   KKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDL 66
           +K +K    R  AR   VQALY   + G +  ++        F  D ++D       VD 
Sbjct: 4   QKQVKKPSARRRARECTVQALYSWAVSGNTAEQV-----ELAFVLDQDMD------GVDK 52

Query: 67  EWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVI 126
            +FR +    ++  + +D  IS  +    +F  LD I  +ILR  V EL     VP +V+
Sbjct: 53  PYFRKLFRQTVENIETVDFSISPYIDR--AFDELDPIETAILRLAVYELRFELDVPYKVV 110

Query: 127 ISEYVCIAHDFFYGDEPKFINAVLDKVS 154
           I+E + +A  F   +  K+IN VLDK++
Sbjct: 111 INEAIEVAKVFGADESHKYINGVLDKIA 138


>gi|209363834|ref|YP_001423988.2| transcription antitermination protein NusB [Coxiella burnetii
           Dugway 5J108-111]
 gi|207081767|gb|ABS77377.2| N utilization substance protein B [Coxiella burnetii Dugway
           5J108-111]
          Length = 179

 Score = 59.3 bits (142), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 42/151 (27%), Positives = 77/151 (50%), Gaps = 13/151 (8%)

Query: 4   QDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLH 63
           ++N+++L ++  R  AR  A+QALYQ          +IS++      +DT          
Sbjct: 35  KNNRRNLMINKTRHNARRYALQALYQWFFCETKPDALISQFMEEHDLSDT---------- 84

Query: 64  VDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPV 123
            D+ +F+ ++ G +     ID L+++ L  K   S L+ +  S+LR  + EL+    VP 
Sbjct: 85  -DVAYFKEVVTGTIQHVAIIDELMTAHLDRK--ISALNPVELSVLRLSIYELLHRKEVPY 141

Query: 124 EVIISEYVCIAHDFFYGDEPKFINAVLDKVS 154
           +V+I E + +  +F      K++NA+LD +S
Sbjct: 142 KVVIDEALELVKEFGAEAGHKYVNAILDVLS 172


>gi|68249964|ref|YP_249076.1| transcription antitermination protein NusB [Haemophilus influenzae
           86-028NP]
 gi|81335612|sp|Q4QKN1|NUSB_HAEI8 RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|68058163|gb|AAX88416.1| N utilization substance protein B [Haemophilus influenzae 86-028NP]
          Length = 144

 Score = 59.3 bits (142), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 45/148 (30%), Positives = 71/148 (47%), Gaps = 13/148 (8%)

Query: 7   KKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDL 66
           +K +K    R  AR   VQALY   + G +  ++        F  D ++D       VD 
Sbjct: 4   QKQVKKPSARRRARECTVQALYSWAVSGNTAEQV-----ELAFVLDQDMD------GVDK 52

Query: 67  EWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVI 126
            +FR +    ++  + +D  IS  +    +F  LD I  +ILR  V EL     VP +V+
Sbjct: 53  PYFRKLFRQTVENIETVDFSISPYIDR--AFDELDPIETAILRLAVYELCFELDVPYKVV 110

Query: 127 ISEYVCIAHDFFYGDEPKFINAVLDKVS 154
           I+E + +A  F   +  K+IN VLDK++
Sbjct: 111 INEAIEVAKVFGADESHKYINGVLDKIA 138


>gi|208779634|ref|ZP_03246979.1| transcription antitermination factor NusB [Francisella novicida
           FTG]
 gi|208744595|gb|EDZ90894.1| transcription antitermination factor NusB [Francisella novicida
           FTG]
          Length = 141

 Score = 59.3 bits (142), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 47/147 (31%), Positives = 70/147 (47%), Gaps = 13/147 (8%)

Query: 10  LKLSHR-RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEW 68
           +K + R R  ARL AVQALYQ  I   + +E+  +Y  Y   AD          + D + 
Sbjct: 1   MKTTARARNNARLYAVQALYQKKIADNTFSELKIQY--YADNADRH--------YTDWDL 50

Query: 69  FRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIIS 128
           F  +I  V   +  ID  I            ++ +  ++L+  + ELIEC   P +VII 
Sbjct: 51  FYRLIDAVKTNQDTIDKYIKENSNN--GVESINYVDYAVLQVAIAELIECFENPYQVIIK 108

Query: 129 EYVCIAHDFFYGDEPKFINAVLDKVSR 155
           EYV I +     +  KFINAVL  +++
Sbjct: 109 EYVEICYSMGTEEGYKFINAVLQNLAK 135


>gi|30264257|ref|NP_846634.1| transcription antitermination protein NusB [Bacillus anthracis str.
           Ames]
 gi|47529700|ref|YP_021049.1| transcription antitermination protein NusB [Bacillus anthracis str.
           'Ames Ancestor']
 gi|47569441|ref|ZP_00240122.1| transcription antitermination factor nusB [Bacillus cereus G9241]
 gi|49187084|ref|YP_030336.1| transcription antitermination protein NusB [Bacillus anthracis str.
           Sterne]
 gi|49478572|ref|YP_038243.1| transcription antitermination protein NusB [Bacillus thuringiensis
           serovar konkukian str. 97-27]
 gi|52141314|ref|YP_085515.1| transcription antitermination protein NusB [Bacillus cereus E33L]
 gi|65321567|ref|ZP_00394526.1| COG0781: Transcription termination factor [Bacillus anthracis str.
           A2012]
 gi|118479373|ref|YP_896524.1| transcription antitermination protein NusB [Bacillus thuringiensis
           str. Al Hakam]
 gi|165873007|ref|ZP_02217629.1| N utilization substance protein B [Bacillus anthracis str. A0488]
 gi|167634649|ref|ZP_02392969.1| N utilization substance protein B [Bacillus anthracis str. A0442]
 gi|167638629|ref|ZP_02396905.1| N utilization substance protein B [Bacillus anthracis str. A0193]
 gi|170687525|ref|ZP_02878742.1| N utilization substance protein B [Bacillus anthracis str. A0465]
 gi|170709044|ref|ZP_02899474.1| N utilization substance protein B [Bacillus anthracis str. A0389]
 gi|177654829|ref|ZP_02936586.1| N utilization substance protein B [Bacillus anthracis str. A0174]
 gi|190565849|ref|ZP_03018768.1| N utilization substance protein B [Bacillus anthracis
           Tsiankovskii-I]
 gi|196034887|ref|ZP_03102294.1| N utilization substance protein B [Bacillus cereus W]
 gi|196041593|ref|ZP_03108885.1| N utilization substance protein B [Bacillus cereus NVH0597-99]
 gi|196046394|ref|ZP_03113620.1| N utilization substance protein B [Bacillus cereus 03BB108]
 gi|206976312|ref|ZP_03237220.1| N utilization substance protein B [Bacillus cereus H3081.97]
 gi|217961672|ref|YP_002340242.1| transcription antitermination protein NusB [Bacillus cereus AH187]
 gi|218905318|ref|YP_002453152.1| N utilization substance protein B [Bacillus cereus AH820]
 gi|222097628|ref|YP_002531685.1| transcription antitermination protein nusb [Bacillus cereus Q1]
 gi|225866164|ref|YP_002751542.1| N utilization substance protein B [Bacillus cereus 03BB102]
 gi|227816958|ref|YP_002816967.1| N utilization substance protein B [Bacillus anthracis str. CDC 684]
 gi|228916818|ref|ZP_04080383.1| N utilization substance protein B [Bacillus thuringiensis serovar
           pulsiensis BGSC 4CC1]
 gi|228929228|ref|ZP_04092255.1| N utilization substance protein B [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
 gi|228935505|ref|ZP_04098323.1| N utilization substance protein B [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
 gi|228947899|ref|ZP_04110186.1| N utilization substance protein B [Bacillus thuringiensis serovar
           monterrey BGSC 4AJ1]
 gi|229031831|ref|ZP_04187819.1| N utilization substance protein B [Bacillus cereus AH1271]
 gi|229123702|ref|ZP_04252897.1| N utilization substance protein B [Bacillus cereus 95/8201]
 gi|229604290|ref|YP_002868476.1| N utilization substance protein B [Bacillus anthracis str. A0248]
 gi|254683946|ref|ZP_05147806.1| transcription antitermination protein NusB [Bacillus anthracis str.
           CNEVA-9066]
 gi|254721781|ref|ZP_05183570.1| transcription antitermination protein NusB [Bacillus anthracis str.
           A1055]
 gi|254736294|ref|ZP_05194000.1| transcription antitermination protein NusB [Bacillus anthracis str.
           Western North America USA6153]
 gi|254741332|ref|ZP_05199019.1| transcription antitermination protein NusB [Bacillus anthracis str.
           Kruger B]
 gi|254754034|ref|ZP_05206069.1| transcription antitermination protein NusB [Bacillus anthracis str.
           Vollum]
 gi|254757905|ref|ZP_05209932.1| transcription antitermination protein NusB [Bacillus anthracis str.
           Australia 94]
 gi|301055675|ref|YP_003793886.1| transcription antitermination protein NusB [Bacillus anthracis CI]
 gi|39931872|sp|Q81M49|NUSB_BACAN RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|81613591|sp|Q6HDY3|NUSB_BACHK RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|81686283|sp|Q635A2|NUSB_BACCZ RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|166215664|sp|A0RIH4|NUSB_BACAH RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|226737438|sp|B7JM33|NUSB_BACC0 RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|226738895|sp|B7HNU5|NUSB_BACC7 RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|254772611|sp|C3P7W1|NUSB_BACAA RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|254772612|sp|C3LJV6|NUSB_BACAC RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|254772613|sp|C1ERQ5|NUSB_BACC3 RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|254772614|sp|B9IXH5|NUSB_BACCQ RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|30258902|gb|AAP28120.1| N utilization substance protein B [Bacillus anthracis str. Ames]
 gi|47504848|gb|AAT33524.1| N utilization substance protein B [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|47553856|gb|EAL12226.1| transcription antitermination factor nusB [Bacillus cereus G9241]
 gi|49181011|gb|AAT56387.1| N utilization substance protein B [Bacillus anthracis str. Sterne]
 gi|49330128|gb|AAT60774.1| N utilization substance protein B [Bacillus thuringiensis serovar
           konkukian str. 97-27]
 gi|51974783|gb|AAU16333.1| N utilization substance protein B [Bacillus cereus E33L]
 gi|118418598|gb|ABK87017.1| N utilization substance protein B [Bacillus thuringiensis str. Al
           Hakam]
 gi|164711290|gb|EDR16845.1| N utilization substance protein B [Bacillus anthracis str. A0488]
 gi|167513477|gb|EDR88847.1| N utilization substance protein B [Bacillus anthracis str. A0193]
 gi|167530101|gb|EDR92836.1| N utilization substance protein B [Bacillus anthracis str. A0442]
 gi|170126071|gb|EDS94968.1| N utilization substance protein B [Bacillus anthracis str. A0389]
 gi|170668720|gb|EDT19466.1| N utilization substance protein B [Bacillus anthracis str. A0465]
 gi|172080490|gb|EDT65576.1| N utilization substance protein B [Bacillus anthracis str. A0174]
 gi|190562768|gb|EDV16734.1| N utilization substance protein B [Bacillus anthracis
           Tsiankovskii-I]
 gi|195992426|gb|EDX56387.1| N utilization substance protein B [Bacillus cereus W]
 gi|196022864|gb|EDX61545.1| N utilization substance protein B [Bacillus cereus 03BB108]
 gi|196027581|gb|EDX66196.1| N utilization substance protein B [Bacillus cereus NVH0597-99]
 gi|206745508|gb|EDZ56907.1| N utilization substance protein B [Bacillus cereus H3081.97]
 gi|217067907|gb|ACJ82157.1| N utilization substance protein B [Bacillus cereus AH187]
 gi|218539371|gb|ACK91769.1| N utilization substance protein B [Bacillus cereus AH820]
 gi|221241686|gb|ACM14396.1| N utilization substance protein B [Bacillus cereus Q1]
 gi|225785990|gb|ACO26207.1| N utilization substance protein B [Bacillus cereus 03BB102]
 gi|227003150|gb|ACP12893.1| N utilization substance protein B [Bacillus anthracis str. CDC 684]
 gi|228659837|gb|EEL15482.1| N utilization substance protein B [Bacillus cereus 95/8201]
 gi|228729449|gb|EEL80438.1| N utilization substance protein B [Bacillus cereus AH1271]
 gi|228811886|gb|EEM58220.1| N utilization substance protein B [Bacillus thuringiensis serovar
           monterrey BGSC 4AJ1]
 gi|228824257|gb|EEM70071.1| N utilization substance protein B [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
 gi|228830518|gb|EEM76128.1| N utilization substance protein B [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
 gi|228843005|gb|EEM88088.1| N utilization substance protein B [Bacillus thuringiensis serovar
           pulsiensis BGSC 4CC1]
 gi|229268698|gb|ACQ50335.1| N utilization substance protein B [Bacillus anthracis str. A0248]
 gi|300377844|gb|ADK06748.1| transcription antitermination protein NusB [Bacillus cereus biovar
           anthracis str. CI]
 gi|324328096|gb|ADY23356.1| transcription antitermination protein NusB [Bacillus thuringiensis
           serovar finitimus YBT-020]
          Length = 130

 Score = 59.3 bits (142), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 47/142 (33%), Positives = 68/142 (47%), Gaps = 18/142 (12%)

Query: 15  RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74
           +R  AR  A+QALYQ+DI G        E E      +T  + E        E+   ++ 
Sbjct: 2   KRRTARERAMQALYQMDITG--------ELEPKVAVENTLDEGEETN-----EFLESLVV 48

Query: 75  GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134
           G ++ K+ ID  I   L +KW   R+ ++  SILR  V E+     +P  V I+E + IA
Sbjct: 49  GFVENKEVIDEAIRQNL-KKWKLERISIVDRSILRVAVYEMKYMEEIPHNVTINEAIEIA 107

Query: 135 HDFFYGDEP--KFINAVLDKVS 154
             F  GDE   +FIN VL  + 
Sbjct: 108 KTF--GDEESRRFINGVLSNIK 127


>gi|299537762|ref|ZP_07051051.1| N utilization substance protein B-like protein [Lysinibacillus
           fusiformis ZC1]
 gi|298726741|gb|EFI67327.1| N utilization substance protein B-like protein [Lysinibacillus
           fusiformis ZC1]
          Length = 127

 Score = 58.9 bits (141), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 41/147 (27%), Positives = 68/147 (46%), Gaps = 25/147 (17%)

Query: 15  RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLE----WFR 70
           +R  AR  A+Q L+Q+D                    +T+L VE    H+  +    ++ 
Sbjct: 2   KRHEAREKALQVLFQLD--------------------NTDLTVEEAMGHIKGQPTNAFYE 41

Query: 71  VIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEY 130
            I++G  +  + ID  +   L EKWS +RL  I  ++LR  V EL+     P  V+++E 
Sbjct: 42  KIVNGTAEHLEEIDATLEQHL-EKWSLARLPKIERTVLRLAVYELLYMPETPKRVVLNEA 100

Query: 131 VCIAHDFFYGDEPKFINAVLDKVSRKE 157
           + +   F      KF+N VL K + +E
Sbjct: 101 IELCKTFGDDSSSKFVNGVLSKFTEQE 127


>gi|222099929|ref|YP_002534497.1| N utilization substance protein B like protein [Thermotoga
           neapolitana DSM 4359]
 gi|221572319|gb|ACM23131.1| N utilization substance protein B like protein [Thermotoga
           neapolitana DSM 4359]
          Length = 135

 Score = 58.9 bits (141), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 31/87 (35%), Positives = 51/87 (58%), Gaps = 1/87 (1%)

Query: 70  RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISE 129
           R  I  + +  Q ID LIS  L E+W+  RL  +  +ILR G  EL+    +P+EV I+E
Sbjct: 41  RRYIRNIKEHLQTIDDLISRYL-ERWTIDRLSAVDRNILRLGTYELLYEKDIPIEVTINE 99

Query: 130 YVCIAHDFFYGDEPKFINAVLDKVSRK 156
            + IA  +   +  KF+N +LD+++++
Sbjct: 100 AIEIAKRYGTENSGKFVNGILDRIAKE 126


>gi|15827185|ref|NP_301448.1| transcription antitermination protein NusB [Mycobacterium leprae
           TN]
 gi|221229663|ref|YP_002503079.1| transcription antitermination protein NusB [Mycobacterium leprae
           Br4923]
 gi|18202776|sp|Q9CCR9|NUSB_MYCLE RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|254772649|sp|B8ZUK7|NUSB_MYCLB RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|13092733|emb|CAC30031.1| putative transcription termination protein [Mycobacterium leprae]
 gi|219932770|emb|CAR70616.1| putative transcription termination protein [Mycobacterium leprae
           Br4923]
          Length = 190

 Score = 58.9 bits (141), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 44/135 (32%), Positives = 64/135 (47%), Gaps = 9/135 (6%)

Query: 19  ARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMD 78
           AR  AV  L++ +    S  EII   E     A ++LDV  ++      +  V+  GV +
Sbjct: 11  ARKRAVDLLFEAEARDLSPLEII---EVRSALAKSKLDVAPLH-----PYTVVVAQGVSE 62

Query: 79  RKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFF 138
               ID LI S L + W   RL  +  +ILR  + EL+    VP  V + E V +A +  
Sbjct: 63  HTARIDELIISHL-QGWKLDRLPAVDRAILRVSIWELLYADDVPEPVAVDEAVELAKELS 121

Query: 139 YGDEPKFINAVLDKV 153
             D P F+N +L KV
Sbjct: 122 TDDSPGFVNGLLGKV 136


>gi|251796318|ref|YP_003011049.1| NusB antitermination factor [Paenibacillus sp. JDR-2]
 gi|247543944|gb|ACT00963.1| NusB antitermination factor [Paenibacillus sp. JDR-2]
          Length = 153

 Score = 58.9 bits (141), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 42/154 (27%), Positives = 77/154 (50%), Gaps = 6/154 (3%)

Query: 15  RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDL--EWFRVI 72
           +R +AR  AV +LYQ+++   +  E +   +     A +E ++E+ ++  D    + R +
Sbjct: 2   KRRLAREIAVSSLYQLEMNEVTPMEAV---DMLMEEARSENEIEAEFVENDQTDNYVREL 58

Query: 73  IHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVC 132
           ++GV + K  ID  +   LT  W   RL  +   ILR    E+   + VP +  I+E + 
Sbjct: 59  VNGVAENKAAIDERLQHYLT-GWQVDRLSRVDRQILRLAYFEIAYRNDVPPKAAINEAIE 117

Query: 133 IAHDFFYGDEPKFINAVLDKVSRKEEIKRSGCVS 166
           +A  F   +  KF+N VL K+ ++ E + +   S
Sbjct: 118 LAKHFGTEESGKFVNGVLGKLLKEREGETANSES 151


>gi|317505974|ref|ZP_07963806.1| transcription antitermination factor NusB [Segniliparus rugosus
           ATCC BAA-974]
 gi|316255750|gb|EFV14988.1| transcription antitermination factor NusB [Segniliparus rugosus
           ATCC BAA-974]
          Length = 166

 Score = 58.9 bits (141), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 43/143 (30%), Positives = 67/143 (46%), Gaps = 8/143 (5%)

Query: 11  KLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFR 70
           K +  R  ARL AV+ L++ +       E+ +E       A+   D+ +  L     +  
Sbjct: 11  KRAGSRRKARLRAVELLFEAEARDLDPAELAAER-----SAELVKDLSAPQLT---PYAL 62

Query: 71  VIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEY 130
           V++ GV D  + +D  IS  L   WS +RL  +  SILR  V EL+    VP  V + E 
Sbjct: 63  VVLEGVRDHLEVVDQTISDHLRGDWSLNRLPAVDRSILRVAVWELLFAPEVPTAVAVDEA 122

Query: 131 VCIAHDFFYGDEPKFINAVLDKV 153
           + +A      + P FIN VL ++
Sbjct: 123 LELAKGLSTDESPGFINGVLGRL 145


>gi|257456352|ref|ZP_05621549.1| transcription antitermination factor NusB [Treponema vincentii ATCC
           35580]
 gi|257446438|gb|EEV21484.1| transcription antitermination factor NusB [Treponema vincentii ATCC
           35580]
          Length = 147

 Score = 58.9 bits (141), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 46/147 (31%), Positives = 71/147 (48%), Gaps = 11/147 (7%)

Query: 10  LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF 69
           + +  RRG  R+ A QALY  D    S  +++      R     EL  E      D  + 
Sbjct: 1   MAIGRRRG--RILAFQALYAWDAGSLSPDDLLPFPWVER--TGKELHDE------DFLFS 50

Query: 70  RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISE 129
           +++  G ++    ID LI+  L E W F+RL ++  +ILR G   L+        ++I+E
Sbjct: 51  QLLFLGAVEHIDEIDGLIAKNL-ENWDFNRLKLVDKAILRLGTYSLLFQQDTDPRIVINE 109

Query: 130 YVCIAHDFFYGDEPKFINAVLDKVSRK 156
            V IA  +   D  KF+NAVLD + R+
Sbjct: 110 AVTIARIYGTDDSFKFVNAVLDSIKRE 136


>gi|120403637|ref|YP_953466.1| transcription antitermination protein NusB [Mycobacterium
           vanbaalenii PYR-1]
 gi|166215702|sp|A1T8G0|NUSB_MYCVP RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|119956455|gb|ABM13460.1| NusB antitermination factor [Mycobacterium vanbaalenii PYR-1]
          Length = 163

 Score = 58.9 bits (141), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 46/147 (31%), Positives = 65/147 (44%), Gaps = 10/147 (6%)

Query: 8   KDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLE 67
            D K    R  AR  AV  L++ +  G +  E+    E     A+   D  +      L 
Sbjct: 2   PDRKGDRGRHQARKRAVDLLFEAEARGITAAEV---AEARNALAEKRTDDIAT-----LN 53

Query: 68  WFRVII-HGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVI 126
            + V +  GV     HID LIS+ L + W+  RL  +  +ILR  V EL+    VP  V 
Sbjct: 54  PYTVTVAQGVTAHAAHIDDLISAHL-QGWTLDRLPAVDRAILRVAVWELLHAEDVPEPVA 112

Query: 127 ISEYVCIAHDFFYGDEPKFINAVLDKV 153
           + E V +A      D P F+N VL +V
Sbjct: 113 VDEAVELAKQLSTDDSPGFVNGVLGQV 139


>gi|254492114|ref|ZP_05105289.1| transcription antitermination factor NusB [Methylophaga thiooxidans
           DMS010]
 gi|224462666|gb|EEF78940.1| transcription antitermination factor NusB [Methylophaga thiooxydans
           DMS010]
          Length = 150

 Score = 58.9 bits (141), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 41/139 (29%), Positives = 67/139 (48%), Gaps = 13/139 (9%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           R  AR AAVQALYQ  +   +  +   E+ T  + AD           +D ++F  +I G
Sbjct: 7   RTKARRAAVQALYQALVNNETPQKAGLEFVTAEY-ADK----------IDRKYFTTLIEG 55

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
            +  +Q ID  +S  +      + +D +  S+LR  V E +    +P  V+++E V +A 
Sbjct: 56  TIKYQQAIDAELSEAVDR--DLNAVDPVEISVLRLAVFEFMHLPEIPYRVVLNEAVELAK 113

Query: 136 DFFYGDEPKFINAVLDKVS 154
            F      K++N VLDK+ 
Sbjct: 114 SFGGEQGHKYVNGVLDKMG 132


>gi|294141965|ref|YP_003557943.1| N utilization substance protein B [Shewanella violacea DSS12]
 gi|293328434|dbj|BAJ03165.1| N utilization substance protein B [Shewanella violacea DSS12]
          Length = 134

 Score = 58.9 bits (141), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 48/148 (32%), Positives = 73/148 (49%), Gaps = 15/148 (10%)

Query: 10  LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF 69
           +K S RR   RLA VQA+Y   + G +  ++  E+E   F  + ++D       +D+ +F
Sbjct: 1   MKPSERRKARRLA-VQAIYSWQLSGNNIADV--EHE---FLTEQKID------GIDVAYF 48

Query: 70  RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISE 129
           R +  G   +   ID LI   +     F+ +  I  +ILR    EL     VP +V I+E
Sbjct: 49  RELFTGTATKHAQIDELIIPHVER--PFNEVSPIEKAILRMATYELTFRKDVPYKVAINE 106

Query: 130 YVCIAHDFFYGDEPKFINAVLDK-VSRK 156
            + +A  F   D  KF+N +LDK V RK
Sbjct: 107 AIELAKTFGAEDGHKFVNGILDKIVGRK 134


>gi|187251633|ref|YP_001876115.1| NusB antitermination factor [Elusimicrobium minutum Pei191]
 gi|254772640|sp|B2KE32|NUSB_ELUMP RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|186971793|gb|ACC98778.1| NusB anti-termination factor [Elusimicrobium minutum Pei191]
          Length = 140

 Score = 58.9 bits (141), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 41/146 (28%), Positives = 72/146 (49%), Gaps = 13/146 (8%)

Query: 12  LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71
           + +RR +AR  A+Q LY  D  G +  + I+EY+          D +        E+   
Sbjct: 1   MGNRR-LAREHALQTLYYADT-GKTQGKDINEYKE---------DFKDSLDAAGFEFCSG 49

Query: 72  IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLE-LIECHSVPVEVIISEY 130
           II G ++ +  +D +IS    + WS +R+ ++  SILR    E L    + PV  +I E 
Sbjct: 50  IIDGALEHQAELDKIIS-AYAKNWSLNRMSVVDRSILRMAAYEMLFSPENTPVAAVIDEA 108

Query: 131 VCIAHDFFYGDEPKFINAVLDKVSRK 156
           + +A  F   +  +FIN +LD++ ++
Sbjct: 109 IELAKKFSTENSSRFINGLLDQIKKE 134


>gi|307546178|ref|YP_003898657.1| transcription antitermination protein NusB [Halomonas elongata DSM
           2581]
 gi|307218202|emb|CBV43472.1| transcription antitermination protein NusB [Halomonas elongata DSM
           2581]
          Length = 166

 Score = 58.9 bits (141), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 44/143 (30%), Positives = 69/143 (48%), Gaps = 8/143 (5%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHV----DLEWFRV 71
           R  AR  AVQ LYQ ++ G S   + +E+      AD +L+    +  V    DL  F  
Sbjct: 15  RRAARELAVQGLYQWEMTGKSVATVEAEFRGQ--VADEDLEDHENWHKVMELADLALFHE 72

Query: 72  IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
           ++ GV    + ID  ++  L  +     LD I  +ILR G  EL     VP   +I+E V
Sbjct: 73  LLSGVAQHCEKIDEQLAPVLDRR--LEDLDAIELAILRLGTYELAYRLEVPYRAVINEGV 130

Query: 132 CIAHDFFYGDEPKFINAVLDKVS 154
            +A  F   +  +++N +LDK++
Sbjct: 131 ELAKSFGATEGHRYVNGILDKLA 153


>gi|325981170|ref|YP_004293572.1| NusB antitermination factor [Nitrosomonas sp. AL212]
 gi|325530689|gb|ADZ25410.1| NusB antitermination factor [Nitrosomonas sp. AL212]
          Length = 166

 Score = 58.9 bits (141), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 41/148 (27%), Positives = 67/148 (45%), Gaps = 13/148 (8%)

Query: 7   KKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDL 66
           KK  K   RR IAR   +Q +YQ    G +T  I           + +L     + HVD 
Sbjct: 14  KKAEKYKSRRRIAREFVLQGIYQWRTAGGTTNFI-----------EQQLRESEEFRHVDE 62

Query: 67  EWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVI 126
           + F  ++ G + +   ++ +I  CL    S   L  +  +IL     ELI    +P   I
Sbjct: 63  KHFTHVLQGALQQVDELEKIIRPCLDR--SLDELSPVEFAILLLSTFELIHHPEIPYRAI 120

Query: 127 ISEYVCIAHDFFYGDEPKFINAVLDKVS 154
           ++E + +A  +   D  K++N VLDK++
Sbjct: 121 LNEAIELARTYGGSDGHKYVNGVLDKLA 148


>gi|332678675|gb|AEE87804.1| Transcription termination protein NusB [Francisella cf. novicida
           Fx1]
          Length = 141

 Score = 58.9 bits (141), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 47/147 (31%), Positives = 71/147 (48%), Gaps = 13/147 (8%)

Query: 10  LKLSHR-RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEW 68
           +K + R R  ARL AVQALYQ  I   + +E+  +Y  Y   AD          + D + 
Sbjct: 1   MKTTARARNNARLYAVQALYQKKIADNTFSELKVQY--YADNADRH--------YTDWDL 50

Query: 69  FRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIIS 128
           F  +I  V   +  ID  I    +       ++ +  ++L+  + ELIEC   P +VII 
Sbjct: 51  FYRLIDAVKTNQDTIDKYIKENSSN--GVESINYVDYAVLQVAIAELIECLENPYQVIIK 108

Query: 129 EYVCIAHDFFYGDEPKFINAVLDKVSR 155
           EYV I +     +  KFINAVL  +++
Sbjct: 109 EYVEICYSMGTEEGYKFINAVLQNLAK 135


>gi|297155776|gb|ADI05488.1| transcription antitermination protein NusB [Streptomyces
           bingchenggensis BCW-1]
          Length = 150

 Score = 58.9 bits (141), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 40/155 (25%), Positives = 67/155 (43%), Gaps = 9/155 (5%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           R  AR  A Q L++ D  G S   +++++  +    D +  V    +         ++ G
Sbjct: 4   RNKARKRAFQILFEADQRGTSVQTVLADWIRHARTDDRQPPVSEYTMQ--------LVEG 55

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
                  ID LIS+     W+  R+ ++  +ILR G  EL+     P  V+I E V +A 
Sbjct: 56  YAQYTARIDELISTYAV-GWTLDRMPVVDRNILRLGAYELVWEDETPDAVVIDEAVQLAK 114

Query: 136 DFFYGDEPKFINAVLDKVSRKEEIKRSGCVSAITQ 170
           +F   D P F+N +L +    +   R G     T+
Sbjct: 115 EFSTDDSPAFVNGLLGRFKELKPSLRRGEQQPTTE 149


>gi|15672676|ref|NP_266850.1| hypothetical protein L92686 [Lactococcus lactis subsp. lactis
           Il1403]
 gi|12723603|gb|AAK04792.1|AE006302_10 transcription termination protein NusB [Lactococcus lactis subsp.
           lactis Il1403]
          Length = 323

 Score = 58.9 bits (141), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 30/84 (35%), Positives = 51/84 (60%), Gaps = 1/84 (1%)

Query: 67  EWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVI 126
           E+F  ++ GV+D+K+ ++  IS  LT+ WSFSRL ++  +IL+    E++   + P  V 
Sbjct: 236 EYFTQLVDGVLDKKEDLEANISKYLTKTWSFSRLTLVEQAILQVSSYEILYTET-PDVVA 294

Query: 127 ISEYVCIAHDFFYGDEPKFINAVL 150
           ++E V ++ DF      +FIN VL
Sbjct: 295 VNEAVELSKDFSDEKSSRFINGVL 318


>gi|326406239|gb|ADZ63310.1| transcription antitermination factor [Lactococcus lactis subsp.
           lactis CV56]
          Length = 323

 Score = 58.9 bits (141), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 30/84 (35%), Positives = 51/84 (60%), Gaps = 1/84 (1%)

Query: 67  EWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVI 126
           E+F  ++ GV+D+K+ ++  IS  LT+ WSFSRL ++  +IL+    E++   + P  V 
Sbjct: 236 EYFTQLVDGVLDKKEDLEANISKYLTKTWSFSRLTLVEQAILQVSSYEILYTET-PDVVA 294

Query: 127 ISEYVCIAHDFFYGDEPKFINAVL 150
           ++E V ++ DF      +FIN VL
Sbjct: 295 VNEAVELSKDFSDEKSSRFINGVL 318


>gi|332992370|gb|AEF02425.1| transcription antitermination protein NusB [Alteromonas sp. SN2]
          Length = 140

 Score = 58.9 bits (141), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 35/92 (38%), Positives = 46/92 (50%), Gaps = 2/92 (2%)

Query: 64  VDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPV 123
           VD+ +F+ ++ GV     H+D  I   L        LD I  +ILR   LEL E   VP 
Sbjct: 43  VDMAYFQALLRGVAHSASHLDTTIKPYLGR--LPEELDAIEKAILRIATLELTERKDVPY 100

Query: 124 EVIISEYVCIAHDFFYGDEPKFINAVLDKVSR 155
            VII+E + +A  F   +  KFIN  LDK  R
Sbjct: 101 RVIINEAIELAKSFGAEESHKFINGALDKAVR 132


>gi|326382154|ref|ZP_08203846.1| transcription antitermination protein NusB [Gordonia neofelifaecis
           NRRL B-59395]
 gi|326198884|gb|EGD56066.1| transcription antitermination protein NusB [Gordonia neofelifaecis
           NRRL B-59395]
          Length = 149

 Score = 58.9 bits (141), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 42/145 (28%), Positives = 70/145 (48%), Gaps = 9/145 (6%)

Query: 10  LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF 69
           +K    R  AR  AV  L++ +      T++I+E        D+   V ++Y     ++ 
Sbjct: 1   MKKPGTRHKARKRAVDLLFEAEAKNVKATQLIAERREIYPSDDS---VGTMY-----DYT 52

Query: 70  RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISE 129
             ++ GV      +D +I S L E W   RL  +  +ILR  V EL+  + V ++V++ E
Sbjct: 53  VRVVEGVTVDASQVDAVIESHL-ENWKLHRLPAVDRAILRLAVWELLYANDVDIDVVLDE 111

Query: 130 YVCIAHDFFYGDEPKFINAVLDKVS 154
            V +A +    D P F+N VL KV+
Sbjct: 112 AVELAKELSTDDSPSFVNGVLGKVA 136


>gi|187917985|ref|YP_001883548.1| transcription antitermination protein NusB [Borrelia hermsii DAH]
 gi|119860833|gb|AAX16628.1| N utilization substance protein B [Borrelia hermsii DAH]
          Length = 146

 Score = 58.9 bits (141), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 48/151 (31%), Positives = 75/151 (49%), Gaps = 15/151 (9%)

Query: 10  LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF 69
           + L H+   AR+ A Q +Y ID+  C   + I  Y+ +       L+   V L  DL+ F
Sbjct: 3   MNLRHK---ARVLAFQKIYSIDV-NCKAKDNI--YDIF------GLEDHGVDLEEDLKLF 50

Query: 70  -RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLEL-IECHSVPVEVII 127
             V+++G  D  + ID LIS  ++  W   R+D +  +ILR  V  L  +   VP  VII
Sbjct: 51  YSVLVNGTCDNLESIDKLISD-ISLNWRLDRMDKVDLAILRVSVYSLKFQNLDVPKRVII 109

Query: 128 SEYVCIAHDFFYGDEPKFINAVLDKVSRKEE 158
            E + IA  +   +  KF+N +LD + +  E
Sbjct: 110 DEAILIAKKYGSKNSYKFVNGILDALLKDME 140


>gi|145636230|ref|ZP_01791900.1| transcription antitermination protein NusB [Haemophilus influenzae
           PittHH]
 gi|145641684|ref|ZP_01797261.1| transcription antitermination protein NusB [Haemophilus influenzae
           R3021]
 gi|145270752|gb|EDK10685.1| transcription antitermination protein NusB [Haemophilus influenzae
           PittHH]
 gi|145273731|gb|EDK13600.1| transcription antitermination protein NusB [Haemophilus influenzae
           22.4-21]
          Length = 144

 Score = 58.9 bits (141), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 45/148 (30%), Positives = 71/148 (47%), Gaps = 13/148 (8%)

Query: 7   KKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDL 66
           +K +K    R  AR   VQALY   + G +  ++        F  D ++D       VD 
Sbjct: 4   QKQVKKPSARRRARECTVQALYSWAVSGNTAEQV-----ELAFVLDQDMD------GVDK 52

Query: 67  EWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVI 126
            +FR +    ++  + +D  IS  +    +F  LD I  +ILR  V EL     VP +V+
Sbjct: 53  PYFRKLFRQTIENIETVDFSISPYIDR--TFDELDPIETAILRLAVYELHFELDVPYKVV 110

Query: 127 ISEYVCIAHDFFYGDEPKFINAVLDKVS 154
           I+E + +A  F   +  K+IN VLDK++
Sbjct: 111 INEAIEVAKVFGADESHKYINGVLDKIA 138


>gi|39932003|sp|Q9CHN4|NUSB_LACLA RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
          Length = 192

 Score = 58.9 bits (141), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 30/84 (35%), Positives = 51/84 (60%), Gaps = 1/84 (1%)

Query: 67  EWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVI 126
           E+F  ++ GV+D+K+ ++  IS  LT+ WSFSRL ++  +IL+    E++   + P  V 
Sbjct: 105 EYFTQLVDGVLDKKEDLEANISKYLTKTWSFSRLTLVEQAILQVSSYEILYTET-PDVVA 163

Query: 127 ISEYVCIAHDFFYGDEPKFINAVL 150
           ++E V ++ DF      +FIN VL
Sbjct: 164 VNEAVELSKDFSDEKSSRFINGVL 187


>gi|116618710|ref|YP_819081.1| NusB antitermination factor [Leuconostoc mesenteroides subsp.
           mesenteroides ATCC 8293]
 gi|227432118|ref|ZP_03914130.1| transcription antitermination protein NusB [Leuconostoc
           mesenteroides subsp. cremoris ATCC 19254]
 gi|116097557|gb|ABJ62708.1| NusB antitermination factor [Leuconostoc mesenteroides subsp.
           mesenteroides ATCC 8293]
 gi|227352145|gb|EEJ42359.1| transcription antitermination protein NusB [Leuconostoc
           mesenteroides subsp. cremoris ATCC 19254]
          Length = 137

 Score = 58.5 bits (140), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 30/92 (32%), Positives = 50/92 (54%)

Query: 67  EWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVI 126
           ++   +++GV+  K  +D  ISS L E W+ +R++     ILR  + EL    + P +V 
Sbjct: 44  DYLPRLVNGVLGSKADLDEKISSHLAEGWAINRINKADLVILRLAIYELTAVEATPYKVA 103

Query: 127 ISEYVCIAHDFFYGDEPKFINAVLDKVSRKEE 158
           I E + +A  F   D+ KF+N VL   +R E+
Sbjct: 104 IDEAIELAKTFADEDDRKFVNGVLKHFARDEK 135


>gi|183601040|ref|ZP_02962533.1| hypothetical protein PROSTU_04661 [Providencia stuartii ATCC 25827]
 gi|188019378|gb|EDU57418.1| hypothetical protein PROSTU_04661 [Providencia stuartii ATCC 25827]
          Length = 138

 Score = 58.5 bits (140), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 39/132 (29%), Positives = 67/132 (50%), Gaps = 13/132 (9%)

Query: 23  AVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQH 82
           AVQA+Y   + G + +++      Y F A+ ++        VD+ +FR ++ GV +    
Sbjct: 13  AVQAIYSWQLSGNNVSDV-----EYEFIAEQDMS------DVDVIYFRELLSGVANNAAK 61

Query: 83  IDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDE 142
           +D L++  L+ +     L  +  +ILR  + EL     VP +V I+E + +A  F   D 
Sbjct: 62  LDQLMAPFLSRQ--LEELGQVEKAILRVAMYELSYREDVPYKVAINEGIELAKVFGAEDS 119

Query: 143 PKFINAVLDKVS 154
            KF+N VLDK +
Sbjct: 120 HKFVNGVLDKAA 131


>gi|254373311|ref|ZP_04988799.1| N utilisation substance protein B [Francisella tularensis subsp.
           novicida GA99-3549]
 gi|254374776|ref|ZP_04990257.1| N utilization substance protein B [Francisella novicida GA99-3548]
 gi|151571037|gb|EDN36691.1| N utilisation substance protein B [Francisella novicida GA99-3549]
 gi|151572495|gb|EDN38149.1| N utilization substance protein B [Francisella novicida GA99-3548]
          Length = 141

 Score = 58.5 bits (140), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 47/147 (31%), Positives = 70/147 (47%), Gaps = 13/147 (8%)

Query: 10  LKLSHR-RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEW 68
           +K + R R  ARL AVQALYQ  I   + +E+  +Y  Y   AD          + D + 
Sbjct: 1   MKTTARARNNARLYAVQALYQKKIADNTFSELKVQY--YADNADRH--------YTDWDL 50

Query: 69  FRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIIS 128
           F  +I  V   +  ID  I            ++ +  ++L+  + ELIEC   P +VII 
Sbjct: 51  FYRLIDAVKTNQDTIDKYIKENSNN--GVESINYVDYAVLQVAIAELIECLENPYQVIIK 108

Query: 129 EYVCIAHDFFYGDEPKFINAVLDKVSR 155
           EYV I +     +  KFINAVL  +++
Sbjct: 109 EYVEICYSMGTEEGYKFINAVLQNLAK 135


>gi|253576317|ref|ZP_04853647.1| transcription antitermination factor NusB [Paenibacillus sp. oral
           taxon 786 str. D14]
 gi|251844210|gb|EES72228.1| transcription antitermination factor NusB [Paenibacillus sp. oral
           taxon 786 str. D14]
          Length = 149

 Score = 58.5 bits (140), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 40/139 (28%), Positives = 69/139 (49%), Gaps = 2/139 (1%)

Query: 15  RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74
           +R +AR  AVQ++YQ+++      E ++   T     + E +VE   +     +   +++
Sbjct: 2   KRRLAREIAVQSMYQMEMNEVDANEAVTMLLT-EAMEENEGEVELSDVDATRAFALELVN 60

Query: 75  GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134
           G   RK  ID L+   L + W  SRL  +   +LR    E+I    VP +V ++E + +A
Sbjct: 61  GTWSRKDAIDSLLEDYL-KGWQISRLSKVDRQVLRLATYEMIFRDDVPGKVAVNEAIELA 119

Query: 135 HDFFYGDEPKFINAVLDKV 153
             F   +  KF+N VL K+
Sbjct: 120 KHFGSPESGKFVNGVLGKM 138


>gi|283782240|ref|YP_003372995.1| NusB antitermination factor [Pirellula staleyi DSM 6068]
 gi|283440693|gb|ADB19135.1| NusB antitermination factor [Pirellula staleyi DSM 6068]
          Length = 136

 Score = 58.5 bits (140), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 37/143 (25%), Positives = 70/143 (48%), Gaps = 12/143 (8%)

Query: 15  RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74
           RR  AR   +Q LY+ D+    +  +   +   R   D EL          +++ R ++ 
Sbjct: 3   RRSRAREVVLQILYEDDLNPDRSIAVSDVFLRRRLGDDVEL----------VDFARDLLR 52

Query: 75  GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134
           GV  R++ +D+L+     + W+  R+ +   ++LR G  E++   + P  V I+E V +A
Sbjct: 53  GVRGRRKELDVLLQQK-ADHWTLDRMAVTDRNVLRLGAYEILHTQT-PQRVAINEAVELA 110

Query: 135 HDFFYGDEPKFINAVLDKVSRKE 157
             F     P+F+N +LD+  +K+
Sbjct: 111 KRFGARQSPQFVNGILDRFLQKK 133


>gi|269958899|ref|YP_003328688.1| N utilization substance protein B [Anaplasma centrale str. Israel]
 gi|269848730|gb|ACZ49374.1| N utilization substance protein B [Anaplasma centrale str. Israel]
          Length = 173

 Score = 58.5 bits (140), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 46/153 (30%), Positives = 76/153 (49%), Gaps = 8/153 (5%)

Query: 1   MTIQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTEL-DVES 59
           M +     +L     +  AR  AVQ  Y +     ST ++    E    C   E+ DV  
Sbjct: 1   MGVGSESDNLPWYSGKTSARFLAVQGAYSMMFSSYSTEDLDELLE--HLC---EMRDVLG 55

Query: 60  VYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECH 119
           +   VD      I+  ++ +   ID +IS  +++KW+  R+++I  S++RAG+ EL+ C 
Sbjct: 56  LG-RVDKRLLTKILGSMLSKYSEIDAIISEHISKKWTMDRINLISLSVMRAGICELL-CF 113

Query: 120 SVPVEVIISEYVCIAHDFFYGDEPKFINAVLDK 152
           +    V+I+EYV IA       E  F+NA+L+K
Sbjct: 114 NTNESVVINEYVDIASYALEDAEVDFVNAILNK 146


>gi|299143829|ref|ZP_07036909.1| transcription antitermination factor NusB [Peptoniphilus sp. oral
           taxon 386 str. F0131]
 gi|298518314|gb|EFI42053.1| transcription antitermination factor NusB [Peptoniphilus sp. oral
           taxon 386 str. F0131]
          Length = 141

 Score = 58.5 bits (140), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 39/141 (27%), Positives = 69/141 (48%), Gaps = 14/141 (9%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEY-ETYRFCADTELDVESVYLHVDLEWFRVIIH 74
           R  AR+  +Q LYQ+DI    +++ ++ + E + F  + +            ++    I 
Sbjct: 3   RKKARIGQMQVLYQMDITDDFSSDGLNTFLENFEFSEEEK------------DYINSTIP 50

Query: 75  GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134
            ++   ++ID  I S L E WS +RL  +   +LR  + E++    +P EV I+E V I+
Sbjct: 51  EIIKNLENIDQTIQSHL-EGWSLNRLAKVDKEVLRIAIYEILYRDDIPEEVSINEAVEIS 109

Query: 135 HDFFYGDEPKFINAVLDKVSR 155
             F   +  KFIN +L  + R
Sbjct: 110 KQFGSSESSKFINGILGSIYR 130


>gi|291326906|ref|ZP_06126293.2| transcription antitermination factor NusB [Providencia rettgeri DSM
           1131]
 gi|291312467|gb|EFE52920.1| transcription antitermination factor NusB [Providencia rettgeri DSM
           1131]
          Length = 149

 Score = 58.5 bits (140), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 40/132 (30%), Positives = 64/132 (48%), Gaps = 13/132 (9%)

Query: 23  AVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQH 82
           AVQA+Y   + G    E+      Y F A+ ++        VD+ +FR ++ GV      
Sbjct: 24  AVQAIYSWQLSGNPIAEV-----EYEFIAEQDMS------DVDVNYFRELLSGVATNATK 72

Query: 83  IDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDE 142
           +D L++  L+ +     L  +  +ILR  + EL     VP +V I+E + +A  F   D 
Sbjct: 73  LDQLMAPYLSRQ--LEELGQVEKAILRVSMFELSFREDVPYKVAINEGIELAKVFGAEDS 130

Query: 143 PKFINAVLDKVS 154
            KF+N VLDK +
Sbjct: 131 HKFVNGVLDKAA 142


>gi|254368862|ref|ZP_04984875.1| N utilisation substance protein B [Francisella tularensis subsp.
           holarctica FSC022]
 gi|157121783|gb|EDO65953.1| N utilisation substance protein B [Francisella tularensis subsp.
           holarctica FSC022]
          Length = 141

 Score = 58.5 bits (140), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 47/147 (31%), Positives = 71/147 (48%), Gaps = 13/147 (8%)

Query: 10  LKLSHR-RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEW 68
           +K + R R  ARL AVQALYQ  I   + +E+  +Y  Y   AD          + D + 
Sbjct: 1   MKTTARARNNARLYAVQALYQKKIADNTFSELKIQY--YADNADRH--------YTDWDL 50

Query: 69  FRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIIS 128
           F  +I  V   +  ID  I    +       ++ +  ++L+  + ELIEC   P +VII 
Sbjct: 51  FYRLIDAVKTNQDTIDKYIKENSSN--GVESINYVDYAVLQVAIAELIECLENPYQVIIK 108

Query: 129 EYVCIAHDFFYGDEPKFINAVLDKVSR 155
           EYV I +     +  KFINAVL  +++
Sbjct: 109 EYVEICYSMGTEEGYKFINAVLQNLAK 135


>gi|134301537|ref|YP_001121505.1| transcription antitermination factor NusB [Francisella tularensis
           subsp. tularensis WY96-3418]
 gi|134049314|gb|ABO46385.1| transcription antitermination factor NusB [Francisella tularensis
           subsp. tularensis WY96-3418]
          Length = 141

 Score = 58.5 bits (140), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 47/147 (31%), Positives = 71/147 (48%), Gaps = 13/147 (8%)

Query: 10  LKLSHR-RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEW 68
           +K + R R  ARL AVQALYQ  I   + +E+  +Y  Y   AD          + D + 
Sbjct: 1   MKTTARARNNARLYAVQALYQKKIADNTFSELKIQY--YADNADRH--------YTDWDL 50

Query: 69  FRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIIS 128
           F  +I  V   +  ID  I    +       ++ +  ++L+  + ELIEC   P +VII 
Sbjct: 51  FYRLIDAVKTNQDTIDKYIKENSSN--GVESINYVDYAVLQVAIAELIECLENPYQVIIK 108

Query: 129 EYVCIAHDFFYGDEPKFINAVLDKVSR 155
           EYV I +     +  KFINAVL  +++
Sbjct: 109 EYVEICYSMGTEEGYKFINAVLQNLAK 135


>gi|95929563|ref|ZP_01312305.1| NusB antitermination factor [Desulfuromonas acetoxidans DSM 684]
 gi|95134260|gb|EAT15917.1| NusB antitermination factor [Desulfuromonas acetoxidans DSM 684]
          Length = 152

 Score = 58.5 bits (140), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 40/150 (26%), Positives = 75/150 (50%), Gaps = 7/150 (4%)

Query: 11  KLSHRRGIARLAAVQALYQIDIIGCSTTEIISEY-ETYRFCADT--ELDVESVYLHVDLE 67
           K + R G  R  A++ LY +        E++S++   +RF  D   E +     L  D+ 
Sbjct: 3   KGTRRNG--REYALKILYSLYDQDAPLDEVLSDFWGNFRFSNDVLGEPEEPQSPLSDDVI 60

Query: 68  WF-RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVI 126
           +F   ++ GV +  + ID ++    ++ W+  R+  +  S++R    ELI     P  V+
Sbjct: 61  FFSEQLVKGVYEHLEEIDAMLLDT-SKNWALDRMPRLDLSLMRMACYELIYVDKTPTNVV 119

Query: 127 ISEYVCIAHDFFYGDEPKFINAVLDKVSRK 156
           I+E + IA  +   D P F+N VLD+++++
Sbjct: 120 INEAIEIAKRYGTKDTPAFLNGVLDRIAKR 149


>gi|119952909|ref|YP_945118.1| transcription antitermination protein NusB [Borrelia turicatae
           91E135]
 gi|119861680|gb|AAX17448.1| N utilization substance protein B [Borrelia turicatae 91E135]
          Length = 146

 Score = 58.5 bits (140), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 46/144 (31%), Positives = 74/144 (51%), Gaps = 10/144 (6%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           R  AR+ A Q +Y IDI  C   + I  Y+ +    D  L++E    ++ L ++ V+++G
Sbjct: 6   RHKARVLAFQKIYSIDI-NCKAKDNI--YDIFNL-EDHGLELEE---NLKL-FYSVLVNG 57

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLEL-IECHSVPVEVIISEYVCIA 134
             D  + ID LIS  ++  W   R+D +  +ILR  V  L  +   VP  VII E + IA
Sbjct: 58  TYDNLEFIDKLISD-ISLNWRLDRMDKVDLAILRMSVYSLKFQNLDVPKRVIIDEAILIA 116

Query: 135 HDFFYGDEPKFINAVLDKVSRKEE 158
             +   +  KF+N +LD + +  E
Sbjct: 117 KKYGSKNSYKFVNGILDALLKNME 140


>gi|52080965|ref|YP_079756.1| transcription antitermination protein NusB [Bacillus licheniformis
           ATCC 14580]
 gi|52786341|ref|YP_092170.1| transcription antitermination protein NusB [Bacillus licheniformis
           ATCC 14580]
 gi|319645077|ref|ZP_07999310.1| N utilization substance protein B [Bacillus sp. BT1B_CT2]
 gi|81609065|sp|Q65HI7|NUSB_BACLD RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|52004176|gb|AAU24118.1| NusB [Bacillus licheniformis ATCC 14580]
 gi|52348843|gb|AAU41477.1| NusB [Bacillus licheniformis ATCC 14580]
 gi|317392886|gb|EFV73680.1| N utilization substance protein B [Bacillus sp. BT1B_CT2]
          Length = 129

 Score = 58.5 bits (140), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 39/139 (28%), Positives = 63/139 (45%), Gaps = 16/139 (11%)

Query: 15  RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74
           +R  AR  A+Q+L+QID+      E +            E D           +F  +++
Sbjct: 2   KRRTAREKALQSLFQIDVSDIEPNEAMQHA-----LDGQESDA----------FFEQLVY 46

Query: 75  GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134
           GV++ K+ ID +I   L   W   RL  +  +ILR    E+I    +PV V ++E + +A
Sbjct: 47  GVLENKEKIDEMIKRHLV-NWKLDRLANVDRAILRLSAYEMIFLDDIPVNVSMNEAIELA 105

Query: 135 HDFFYGDEPKFINAVLDKV 153
             F      KF+N VL  +
Sbjct: 106 KQFGDDKSAKFVNGVLSNI 124


>gi|118470676|ref|YP_887353.1| transcription antitermination protein NusB [Mycobacterium smegmatis
           str. MC2 155]
 gi|166215698|sp|A0QWR5|NUSB_MYCS2 RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|118171963|gb|ABK72859.1| transcription antitermination factor NusB [Mycobacterium smegmatis
           str. MC2 155]
          Length = 160

 Score = 58.2 bits (139), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 45/147 (30%), Positives = 70/147 (47%), Gaps = 14/147 (9%)

Query: 12  LSHRRG-----IARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDL 66
           +  RRG      AR  AV  L++ +  G  T E +++       A+ + DV  +  +  L
Sbjct: 1   MPDRRGDRGRHQARKRAVDLLFEAEARGL-TAEAVADSRAA--LAEDQDDVAPLNPYTVL 57

Query: 67  EWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVI 126
                +  GV +   HID LIS+ L + W+  RL  +  +ILR  V EL+    VP  V 
Sbjct: 58  -----VARGVTEHAAHIDDLISAHL-QGWTLERLPAVDRAILRVAVWELLHAEDVPEPVA 111

Query: 127 ISEYVCIAHDFFYGDEPKFINAVLDKV 153
           + E V +A +    + P F+N VL +V
Sbjct: 112 VDEAVELAKELSTDESPGFVNGVLGQV 138


>gi|226949184|ref|YP_002804275.1| N utilization substance protein B [Clostridium botulinum A2 str.
           Kyoto]
 gi|254772625|sp|C1FPB3|NUSB_CLOBJ RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|226844538|gb|ACO87204.1| N utilization substance protein B [Clostridium botulinum A2 str.
           Kyoto]
          Length = 143

 Score = 58.2 bits (139), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 44/141 (31%), Positives = 68/141 (48%), Gaps = 4/141 (2%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCAD--TELDVESVYLH-VDLEWFRVI 72
           R  +R  A++ L+Q  + G +  E +   +  R   +   E D ESV L  VD+++ + I
Sbjct: 3   RRKSREVAMRLLFQTTLNGENLEEALENLKDVRESEEITKEKDYESVDLKDVDIDYVKRI 62

Query: 73  IHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVC 132
           I G+ + K+ ID  I   L + W   RL  +  SILR    EL     +P  V I+E + 
Sbjct: 63  IKGIEENKEEIDEKIKGNL-KNWKIERLSKVDLSILRLCTYELKFEEDIPNRVSINEAIE 121

Query: 133 IAHDFFYGDEPKFINAVLDKV 153
           +A  +       FIN VL K+
Sbjct: 122 LAKKYSGEKSATFINGVLGKM 142


>gi|322834070|ref|YP_004214097.1| NusB antitermination factor [Rahnella sp. Y9602]
 gi|321169271|gb|ADW74970.1| NusB antitermination factor [Rahnella sp. Y9602]
          Length = 137

 Score = 58.2 bits (139), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 41/132 (31%), Positives = 66/132 (50%), Gaps = 13/132 (9%)

Query: 23  AVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQH 82
           AVQALY   +      ++  E+ T       E DV+ V    D+ +FR ++ GV +  + 
Sbjct: 13  AVQALYSWQLSKNDIADVELEFLT-------EQDVKDV----DIAYFRELLAGVANSAEK 61

Query: 83  IDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDE 142
           +D L++  L+ +     L  +  +ILR  + EL +   VP +V I+E + +A  F   D 
Sbjct: 62  LDALMAPYLSRQ--LDELGQVERAILRLALFELSKRQDVPYKVAINEAIELAKTFGAEDS 119

Query: 143 PKFINAVLDKVS 154
            KF+N VLDK  
Sbjct: 120 HKFVNGVLDKAG 131


>gi|254994892|ref|ZP_05277082.1| N utilization substance protein B (nusB) [Anaplasma marginale str.
           Mississippi]
 gi|255003026|ref|ZP_05277990.1| N utilization substance protein B (nusB) [Anaplasma marginale str.
           Puerto Rico]
 gi|255004149|ref|ZP_05278950.1| N utilization substance protein B (nusB) [Anaplasma marginale str.
           Virginia]
          Length = 173

 Score = 58.2 bits (139), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 32/91 (35%), Positives = 51/91 (56%), Gaps = 1/91 (1%)

Query: 63  HVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVP 122
            VD +    I+  ++ R   ID  IS  + + WS  R++++  SI+RAG+ EL+ C S  
Sbjct: 58  RVDKKLLTKILRSMLARCSEIDATISEHINKNWSMDRINLVSLSIMRAGICELL-CFSTN 116

Query: 123 VEVIISEYVCIAHDFFYGDEPKFINAVLDKV 153
             ++I+EYV IA       E  F+NA+L+K 
Sbjct: 117 ESIVINEYVDIASYALEDAEVNFVNAILNKA 147


>gi|56708465|ref|YP_170361.1| N utilisation substance protein B [Francisella tularensis subsp.
           tularensis SCHU S4]
 gi|110670936|ref|YP_667493.1| N utilisation substance protein B [Francisella tularensis subsp.
           tularensis FSC198]
 gi|224457622|ref|ZP_03666095.1| N utilisation substance protein B [Francisella tularensis subsp.
           tularensis MA00-2987]
 gi|254371089|ref|ZP_04987091.1| N utilization substance protein B [Francisella tularensis subsp.
           tularensis FSC033]
 gi|254875309|ref|ZP_05248019.1| N utilization substance protein B [Francisella tularensis subsp.
           tularensis MA00-2987]
 gi|54113219|gb|AAV29243.1| NT02FT2024 [synthetic construct]
 gi|56604957|emb|CAG46051.1| N utilisation substance protein B [Francisella tularensis subsp.
           tularensis SCHU S4]
 gi|110321269|emb|CAL09434.1| N utilisation substance protein B [Francisella tularensis subsp.
           tularensis FSC198]
 gi|151569329|gb|EDN34983.1| N utilization substance protein B [Francisella tularensis subsp.
           tularensis FSC033]
 gi|254841308|gb|EET19744.1| N utilization substance protein B [Francisella tularensis subsp.
           tularensis MA00-2987]
 gi|282159666|gb|ADA79057.1| N utilisation substance protein B [Francisella tularensis subsp.
           tularensis NE061598]
          Length = 141

 Score = 58.2 bits (139), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 47/147 (31%), Positives = 71/147 (48%), Gaps = 13/147 (8%)

Query: 10  LKLSHR-RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEW 68
           +K + R R  ARL AVQALYQ  I   + +E+  +Y  Y   AD          + D + 
Sbjct: 1   MKTTARARNNARLYAVQALYQKKIADNTFSELKIQY--YADNADRH--------YTDWDL 50

Query: 69  FRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIIS 128
           F  +I  V   +  ID  I    +       ++ +  ++L+  + ELIEC   P +VII 
Sbjct: 51  FYRLIDAVKTNQDTIDKYIKENSSN--GVESINYVDYAVLQVAIAELIECLENPYQVIIK 108

Query: 129 EYVCIAHDFFYGDEPKFINAVLDKVSR 155
           EYV I +     +  KFINAVL  +++
Sbjct: 109 EYVEICYSMGTEEGYKFINAVLQNLAK 135


>gi|118497958|ref|YP_899008.1| transcription termination factor [Francisella tularensis subsp.
           novicida U112]
 gi|194323181|ref|ZP_03056965.1| transcription antitermination factor NusB [Francisella tularensis
           subsp. novicida FTE]
 gi|118423864|gb|ABK90254.1| transcription termination factor [Francisella novicida U112]
 gi|194322545|gb|EDX20025.1| transcription antitermination factor NusB [Francisella tularensis
           subsp. novicida FTE]
          Length = 141

 Score = 58.2 bits (139), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 47/147 (31%), Positives = 70/147 (47%), Gaps = 13/147 (8%)

Query: 10  LKLSHR-RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEW 68
           +K + R R  ARL AVQALYQ  I   + +E+  +Y  Y   AD          + D + 
Sbjct: 1   MKTTARARNNARLYAVQALYQKKIADNTFSELKIQY--YADNADRH--------YTDWDL 50

Query: 69  FRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIIS 128
           F  +I  V   +  ID  I            ++ +  ++L+  + ELIEC   P +VII 
Sbjct: 51  FYRLIDAVKTNQDTIDKYIKENSNN--GVESINYVDYAVLQVAIAELIECLENPYQVIIK 108

Query: 129 EYVCIAHDFFYGDEPKFINAVLDKVSR 155
           EYV I +     +  KFINAVL  +++
Sbjct: 109 EYVEICYSMGTEEGYKFINAVLQNLAK 135


>gi|145634912|ref|ZP_01790619.1| transcription antitermination protein NusB [Haemophilus influenzae
           PittAA]
 gi|229845118|ref|ZP_04465253.1| transcription antitermination protein NusB [Haemophilus influenzae
           6P18H1]
 gi|145267778|gb|EDK07775.1| transcription antitermination protein NusB [Haemophilus influenzae
           PittAA]
 gi|229811954|gb|EEP47648.1| transcription antitermination protein NusB [Haemophilus influenzae
           6P18H1]
          Length = 144

 Score = 58.2 bits (139), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 46/148 (31%), Positives = 73/148 (49%), Gaps = 13/148 (8%)

Query: 7   KKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDL 66
           +K +K    R  AR   VQALY   + G +  ++        F  D ++D       VD 
Sbjct: 4   QKQVKKPSARRRARECTVQALYSWAVSGNTVEQV-----ELAFVLDQDMD------GVDK 52

Query: 67  EWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVI 126
            +FR +    ++  + +D  IS   T++ +F  LD I  +ILR  V EL     VP +V+
Sbjct: 53  PYFRKLFRQTVENIETVDFSISP-YTDR-AFDELDPIETAILRLAVYELRFELDVPYKVV 110

Query: 127 ISEYVCIAHDFFYGDEPKFINAVLDKVS 154
           I+E + +A  F   +  K+IN VLDK++
Sbjct: 111 INEAIEVAKVFGADESHKYINGVLDKIA 138


>gi|239618474|ref|YP_002941796.1| NusB antitermination factor [Kosmotoga olearia TBF 19.5.1]
 gi|239507305|gb|ACR80792.1| NusB antitermination factor [Kosmotoga olearia TBF 19.5.1]
          Length = 148

 Score = 58.2 bits (139), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 36/112 (32%), Positives = 63/112 (56%), Gaps = 5/112 (4%)

Query: 49  FCADTE-LDVESVYLHVDLE---WFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMIL 104
           F A  E L+ E+ +  +D E     +  + G+++    ID +I++ L + W+F RL  I 
Sbjct: 29  FPAAMEYLERETAFYSLDKESKNRAKGYLMGIIEHLDEIDSIITAYL-KNWTFDRLASID 87

Query: 105 CSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRK 156
            S+LR    EL+    VP+EV ++E + I   +   +E KF+N VLDK++++
Sbjct: 88  RSVLRLATYELLYVDDVPIEVTLNEAIEITKKYGSQEEGKFVNGVLDKIAKE 139


>gi|302541095|ref|ZP_07293437.1| transcription antitermination factor NusB [Streptomyces
           hygroscopicus ATCC 53653]
 gi|302458713|gb|EFL21806.1| transcription antitermination factor NusB [Streptomyces
           himastatinicus ATCC 53653]
          Length = 152

 Score = 58.2 bits (139), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 35/138 (25%), Positives = 65/138 (47%), Gaps = 9/138 (6%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           R  AR  A Q L++ D  G S   +++++  +    D +  V    +         ++ G
Sbjct: 4   RNKARKRAFQILFEADQRGSSVQTVLADWIRHARTDDRQPPVSEYTMQ--------LVEG 55

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
             +    ID L+++     W+  R+ ++  +ILR G  EL+   + P  V+I E V +A 
Sbjct: 56  YAEHTARIDELLATYAV-GWTLDRMPVVDRNILRLGAYELVWEDATPDAVVIDEAVQLAK 114

Query: 136 DFFYGDEPKFINAVLDKV 153
           +F   D P F+N +L ++
Sbjct: 115 EFSTDDSPSFVNGLLGRL 132


>gi|148270186|ref|YP_001244646.1| transcription antitermination protein NusB [Thermotoga petrophila
           RKU-1]
 gi|166215727|sp|A5ILJ7|NUSB_THEP1 RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|147735730|gb|ABQ47070.1| NusB antitermination factor [Thermotoga petrophila RKU-1]
          Length = 142

 Score = 58.2 bits (139), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 44/153 (28%), Positives = 71/153 (46%), Gaps = 26/153 (16%)

Query: 10  LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELD------VESVYLH 63
           +K   RR   RLA  +AL+Q                 + F  D +L+      ++  Y  
Sbjct: 1   MKTPRRR--MRLAVFKALFQ-----------------HEFRRDEDLEQILEEILDETYDK 41

Query: 64  VDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPV 123
              E  R  I G+ +    ID LIS  L EKWS +RL  +  ++LR    EL+    +P+
Sbjct: 42  KAKEDARRYIRGIKENLPMIDNLISRYL-EKWSLNRLSAVDRNVLRLATYELLFEKDIPI 100

Query: 124 EVIISEYVCIAHDFFYGDEPKFINAVLDKVSRK 156
           E  I E + IA  +   +  KF+N +LD+++++
Sbjct: 101 EATIDEAIEIAKRYGTENSGKFVNGILDRIAKE 133


>gi|56416682|ref|YP_153756.1| N utilization substance protein B [Anaplasma marginale str. St.
           Maries]
 gi|222475047|ref|YP_002563462.1| N utilization substance protein B (nusB) [Anaplasma marginale str.
           Florida]
 gi|56387914|gb|AAV86501.1| N utilization substance protein B [Anaplasma marginale str. St.
           Maries]
 gi|222419183|gb|ACM49206.1| N utilization substance protein B (nusB) [Anaplasma marginale str.
           Florida]
          Length = 177

 Score = 58.2 bits (139), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 32/91 (35%), Positives = 51/91 (56%), Gaps = 1/91 (1%)

Query: 63  HVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVP 122
            VD +    I+  ++ R   ID  IS  + + WS  R++++  SI+RAG+ EL+ C S  
Sbjct: 62  RVDKKLLTKILRSMLARCSEIDATISEHINKNWSMDRINLVSLSIMRAGICELL-CFSTN 120

Query: 123 VEVIISEYVCIAHDFFYGDEPKFINAVLDKV 153
             ++I+EYV IA       E  F+NA+L+K 
Sbjct: 121 ESIVINEYVDIASYALEDAEVNFVNAILNKA 151


>gi|300870191|ref|YP_003785062.1| transcription antitermination protein NusB [Brachyspira pilosicoli
           95/1000]
 gi|300687890|gb|ADK30561.1| transcription antitermination protein, NusB [Brachyspira pilosicoli
           95/1000]
          Length = 174

 Score = 58.2 bits (139), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 45/152 (29%), Positives = 73/152 (48%), Gaps = 14/152 (9%)

Query: 8   KDLKLSH--RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVD 65
           KDL LS    R  AR+ AV ALY  +I      + ++  E + F  D +    + +    
Sbjct: 33  KDLDLSKYGTRRQARIYAVMALYSYEI----NEKKVNINELFNFEYDDKKAANNSFT--- 85

Query: 66  LEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEV 125
               + ++ G ++  Q ID +I    ++ W+ SR+  +  SI+R  +  LI    +P  V
Sbjct: 86  ----KELVEGTINNLQKIDSIIEKY-SKNWNISRIQYVDKSIIRMSIYSLIYLKDIPKSV 140

Query: 126 IISEYVCIAHDFFYGDEPKFINAVLDKVSRKE 157
           II E V IA  F   D  KF+N +LD +  ++
Sbjct: 141 IIDEAVEIAKIFGDKDSYKFVNGILDAIQEED 172


>gi|261405951|ref|YP_003242192.1| NusB antitermination factor [Paenibacillus sp. Y412MC10]
 gi|329924770|ref|ZP_08279759.1| transcription antitermination factor NusB [Paenibacillus sp. HGF5]
 gi|261282414|gb|ACX64385.1| NusB antitermination factor [Paenibacillus sp. Y412MC10]
 gi|328940435|gb|EGG36758.1| transcription antitermination factor NusB [Paenibacillus sp. HGF5]
          Length = 152

 Score = 58.2 bits (139), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 43/147 (29%), Positives = 72/147 (48%), Gaps = 18/147 (12%)

Query: 15  RRGIARLAAVQALYQIDIIGCSTTEIIS--------EYETYRFCADTELDVESVYLHVDL 66
           +R +AR   VQ+LYQ+++    + E +S        E ET R   D E+ ++   L    
Sbjct: 2   KRRVAREIVVQSLYQMEMNEVDSMEAVSMLLSEAAEENETERVIGD-EVQMKEYVLQ--- 57

Query: 67  EWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVI 126
                +++G  + K  ID L++  L + W  SRL  +   ILR  V EL     VP +V 
Sbjct: 58  -----LVNGTWESKDSIDELLAHYL-KGWQVSRLSRVDRQILRLAVYELTYRDDVPGKVA 111

Query: 127 ISEYVCIAHDFFYGDEPKFINAVLDKV 153
           ++E + ++  F   +  KF+N VL ++
Sbjct: 112 VNEAIELSKHFGTEESGKFVNGVLGRM 138


>gi|153005587|ref|YP_001379912.1| NusB antitermination factor [Anaeromyxobacter sp. Fw109-5]
 gi|166215659|sp|A7HDY2|NUSB_ANADF RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|152029160|gb|ABS26928.1| NusB antitermination factor [Anaeromyxobacter sp. Fw109-5]
          Length = 143

 Score = 57.8 bits (138), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 47/143 (32%), Positives = 69/143 (48%), Gaps = 12/143 (8%)

Query: 12  LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71
           +S +R  AR  A+QALYQID+      + +S     RF    E  VE   +  D E F  
Sbjct: 1   MSLKRTRARERALQALYQIDVAAEGIDDALS-----RFWKSFE-PVEREVME-DAEGF-- 51

Query: 72  IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
            + GV   ++ ID  I    T  W   R+  +  ++LR  V EL+    VPV+V I+E +
Sbjct: 52  -VRGVAAHRRTIDDTIEGVST-NWRLDRMAKVDRNVLRLAVYELLRT-DVPVKVAINEAI 108

Query: 132 CIAHDFFYGDEPKFINAVLDKVS 154
            +   +       F+N VLDKV+
Sbjct: 109 ELGKKYGSESSGAFVNGVLDKVA 131


>gi|126653060|ref|ZP_01725195.1| transcription antitermination protein NusB [Bacillus sp. B14905]
 gi|126590161|gb|EAZ84285.1| transcription antitermination protein NusB [Bacillus sp. B14905]
          Length = 127

 Score = 57.8 bits (138), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 41/147 (27%), Positives = 67/147 (45%), Gaps = 25/147 (17%)

Query: 15  RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLE----WFR 70
           +R  AR  A+Q L+Q+D                    +T+L VE    H+  +    ++ 
Sbjct: 2   KRHEAREKALQVLFQLD--------------------NTDLTVEEAMGHIKGQPTNAFYE 41

Query: 71  VIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEY 130
            I+ G  +  + ID  +   L EKWS +RL  I  ++LR  V EL+     P  V+++E 
Sbjct: 42  KIVTGTAEHLEEIDATLEQHL-EKWSLARLPKIERTVLRLAVYELLYMPETPKRVVLNEA 100

Query: 131 VCIAHDFFYGDEPKFINAVLDKVSRKE 157
           + +   F      KF+N VL K + +E
Sbjct: 101 IELCKTFGDDSSSKFVNGVLSKFTEQE 127


>gi|56420932|ref|YP_148250.1| transcription antitermination protein NusB [Geobacillus
           kaustophilus HTA426]
 gi|297529436|ref|YP_003670711.1| NusB antitermination factor [Geobacillus sp. C56-T3]
 gi|81557844|sp|Q5KXA4|NUSB_GEOKA RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|56380774|dbj|BAD76682.1| transcription termination factor [Geobacillus kaustophilus HTA426]
 gi|297252688|gb|ADI26134.1| NusB antitermination factor [Geobacillus sp. C56-T3]
          Length = 130

 Score = 57.8 bits (138), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 41/140 (29%), Positives = 66/140 (47%), Gaps = 16/140 (11%)

Query: 15  RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74
           +R  AR  A+QAL+QID+      E +     +      ++D           + R ++ 
Sbjct: 2   KRHEAREKALQALFQIDVGRIPPDEAL-----HNVTGGGDID----------PFLRQLVF 46

Query: 75  GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134
           GV++ ++ ID L+ + L EKW+  R+  +  +ILR    E+     VPV V + E V +A
Sbjct: 47  GVVEHQEEIDELLRANL-EKWTLERVANVDRAILRMATYEMKYADDVPVSVSLDEAVELA 105

Query: 135 HDFFYGDEPKFINAVLDKVS 154
             F       F+N VL KV 
Sbjct: 106 KKFGDWKSGSFVNGVLSKVK 125


>gi|317128425|ref|YP_004094707.1| NusB antitermination factor [Bacillus cellulosilyticus DSM 2522]
 gi|315473373|gb|ADU29976.1| NusB antitermination factor [Bacillus cellulosilyticus DSM 2522]
          Length = 132

 Score = 57.8 bits (138), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 42/143 (29%), Positives = 71/143 (49%), Gaps = 16/143 (11%)

Query: 15  RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74
            R +AR+ AVQ+LYQI++ G S  + I          DT L+       +   +   ++ 
Sbjct: 2   NRRVARVRAVQSLYQIEMTGVSPDQAI----------DTVLE----NGEISDSFLSQLVE 47

Query: 75  GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134
           G ++    ID L+ S L + W+ SR+  +  +ILR    E+     +P+ V I+E + IA
Sbjct: 48  GTVEHLHEIDELLISAL-KNWALSRISRVDRAILRMATYEMKCLDDIPMNVSINEAIDIA 106

Query: 135 HDFFYGDEP-KFINAVLDKVSRK 156
             F   +E  KF+N +L  ++ K
Sbjct: 107 KGFTGEEESGKFVNGILSNIATK 129


>gi|240949529|ref|ZP_04753869.1| transcription antitermination protein NusB [Actinobacillus minor
           NM305]
 gi|257464994|ref|ZP_05629365.1| transcription antitermination protein NusB [Actinobacillus minor
           202]
 gi|240296102|gb|EER46763.1| transcription antitermination protein NusB [Actinobacillus minor
           NM305]
 gi|257450654|gb|EEV24697.1| transcription antitermination protein NusB [Actinobacillus minor
           202]
          Length = 144

 Score = 57.8 bits (138), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 51/145 (35%), Positives = 69/145 (47%), Gaps = 7/145 (4%)

Query: 10  LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF 69
           +KL+ RR  AR  AVQALY   I   S  EI   + T  F A+ + D E     +D   F
Sbjct: 1   MKLTPRRR-ARECAVQALYSWAISQNSVEEIELVFHTDTFAAE-DPDTEG---KIDKALF 55

Query: 70  RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISE 129
             I  G +     ID  +   L    +   +D+I  SILR    EL      P +VII+E
Sbjct: 56  TRIFRGTVASIDEIDRSLQPFLDR--NPENVDLIERSILRMAAFELHFEQDTPYKVIINE 113

Query: 130 YVCIAHDFFYGDEPKFINAVLDKVS 154
            + +A  F   D  K+IN VLDK++
Sbjct: 114 AIEVAKAFGSDDSHKYINGVLDKLA 138


>gi|113460974|ref|YP_719041.1| transcription antitermination protein NusB [Haemophilus somnus
           129PT]
 gi|119390774|sp|Q0I3N5|NUSB_HAES1 RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|112823017|gb|ABI25106.1| N utilization substance protein B [Haemophilus somnus 129PT]
          Length = 144

 Score = 57.8 bits (138), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 48/144 (33%), Positives = 72/144 (50%), Gaps = 12/144 (8%)

Query: 11  KLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFR 70
           KLS RR  AR  AVQ LY   I   +  EI        F  D + +++ V    D+ +FR
Sbjct: 7   KLSPRRR-ARECAVQTLYSWAISKNAPEEI-----ELNFIVDQDNEMKGV----DMPYFR 56

Query: 71  VIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEY 130
            +    +D  + +D +++  L        LD I C+ILR  V EL     VP +V+I+E 
Sbjct: 57  KLFRQTVDHVEIVDSIMAPYLDR--DNVELDPIECAILRLAVYELKFELDVPYKVVINEA 114

Query: 131 VCIAHDFFYGDEPKFINAVLDKVS 154
           + +A  F   +  K+IN VLDK++
Sbjct: 115 IEVAKVFGAEESHKYINGVLDKIA 138


>gi|296170770|ref|ZP_06852342.1| N utilization substance protein B [Mycobacterium parascrofulaceum
           ATCC BAA-614]
 gi|295894585|gb|EFG74322.1| N utilization substance protein B [Mycobacterium parascrofulaceum
           ATCC BAA-614]
          Length = 168

 Score = 57.8 bits (138), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 43/138 (31%), Positives = 62/138 (44%), Gaps = 9/138 (6%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           R  AR  AV  L++ +  G    E++    T    A    DV  +       +      G
Sbjct: 11  RHQARKRAVDLLFEAEARGLGPAEVVDVRAT---LAAANPDVAPLQ-----PYTVAAARG 62

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
           V +   HID LISS L + W+  RL  +  +ILR  V EL+    VP  V + E V +A 
Sbjct: 63  VGEHAAHIDDLISSHL-QGWTLDRLPAVDRAILRVAVWELLYADDVPEPVAVDEAVQLAK 121

Query: 136 DFFYGDEPKFINAVLDKV 153
           +    + P F+N VL +V
Sbjct: 122 ELSTDESPAFVNGVLGQV 139


>gi|308174227|ref|YP_003920932.1| transcription termination factor NusB [Bacillus amyloliquefaciens
           DSM 7]
 gi|307607091|emb|CBI43462.1| transcription termination factor NusB [Bacillus amyloliquefaciens
           DSM 7]
 gi|328554172|gb|AEB24664.1| transcription antitermination protein NusB [Bacillus
           amyloliquefaciens TA208]
 gi|328912564|gb|AEB64160.1| transcription termination factor NusB [Bacillus amyloliquefaciens
           LL3]
          Length = 130

 Score = 57.8 bits (138), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 39/139 (28%), Positives = 65/139 (46%), Gaps = 16/139 (11%)

Query: 15  RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74
           +R  AR  A+QAL+QID+   +  E I             LD E         +F  +++
Sbjct: 2   KRRTAREKALQALFQIDVSDIAPNEAIEHA----------LDGEKTDA-----FFEQLVY 46

Query: 75  GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134
           GV++ +  +D +IS  L   W   R+  +  +ILR  V E++    +P  V ++E + +A
Sbjct: 47  GVIEHQVQLDEMISGHLV-NWKLDRIANVDRAILRLAVYEMVYTDDIPANVSLNEAIELA 105

Query: 135 HDFFYGDEPKFINAVLDKV 153
             F      KF+N VL  +
Sbjct: 106 KRFGDDKAAKFVNGVLSNI 124


>gi|148379847|ref|YP_001254388.1| N utilization substance protein B [Clostridium botulinum A str.
           ATCC 3502]
 gi|153933180|ref|YP_001384144.1| transcription antitermination protein NusB [Clostridium botulinum A
           str. ATCC 19397]
 gi|153934479|ref|YP_001387685.1| transcription antitermination protein NusB [Clostridium botulinum A
           str. Hall]
 gi|153938662|ref|YP_001391208.1| transcription antitermination protein NusB [Clostridium botulinum F
           str. Langeland]
 gi|168180474|ref|ZP_02615138.1| N utilization substance protein B [Clostridium botulinum NCTC 2916]
 gi|168184572|ref|ZP_02619236.1| N utilization substance protein B [Clostridium botulinum Bf]
 gi|170757090|ref|YP_001781437.1| transcription antitermination protein NusB [Clostridium botulinum
           B1 str. Okra]
 gi|237795301|ref|YP_002862853.1| N utilization substance protein B [Clostridium botulinum Ba4 str.
           657]
 gi|166215682|sp|A7FUU1|NUSB_CLOB1 RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|166215683|sp|A5I310|NUSB_CLOBH RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|166215684|sp|A7GEJ8|NUSB_CLOBL RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|229620057|sp|B1IMN9|NUSB_CLOBK RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|259514805|sp|C3KXC7|NUSB_CLOB6 RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|148289331|emb|CAL83427.1| N utilization substance protein b [Clostridium botulinum A str.
           ATCC 3502]
 gi|152929224|gb|ABS34724.1| N utilization substance protein B [Clostridium botulinum A str.
           ATCC 19397]
 gi|152930393|gb|ABS35892.1| N utilization substance protein B [Clostridium botulinum A str.
           Hall]
 gi|152934558|gb|ABS40056.1| N utilization substance protein B [Clostridium botulinum F str.
           Langeland]
 gi|169122302|gb|ACA46138.1| N utilization substance protein B [Clostridium botulinum B1 str.
           Okra]
 gi|182668651|gb|EDT80629.1| N utilization substance protein B [Clostridium botulinum NCTC 2916]
 gi|182672364|gb|EDT84325.1| N utilization substance protein B [Clostridium botulinum Bf]
 gi|229261715|gb|ACQ52748.1| N utilization substance protein B [Clostridium botulinum Ba4 str.
           657]
 gi|295319244|gb|ADF99621.1| N utilization substance protein B [Clostridium botulinum F str.
           230613]
 gi|322806136|emb|CBZ03704.1| transcription termination protein NusB [Clostridium botulinum
           H04402 065]
          Length = 143

 Score = 57.8 bits (138), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 43/141 (30%), Positives = 68/141 (48%), Gaps = 4/141 (2%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCAD--TELDVESVYLH-VDLEWFRVI 72
           R  +R  A++ L+Q  + G +  E +   +  R   +   E D ESV L  VD+++ + I
Sbjct: 3   RRKSREVAMRLLFQTTLNGENLEEALENLKDVRESEEITKEKDYESVDLKDVDIDYVKRI 62

Query: 73  IHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVC 132
           I G+ + K+ ID  I   L + W   RL  +  SILR    EL     +P  V ++E + 
Sbjct: 63  IKGIEENKEEIDEKIKGNL-KNWKIERLSKVDLSILRLCTYELKFEEDIPNRVSVNEAIE 121

Query: 133 IAHDFFYGDEPKFINAVLDKV 153
           +A  +       FIN VL K+
Sbjct: 122 LAKKYSGEKSATFINGVLGKM 142


>gi|169828975|ref|YP_001699133.1| N utilization substance protein B-like protein [Lysinibacillus
           sphaericus C3-41]
 gi|238688177|sp|B1HRY0|NUSB_LYSSC RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|168993463|gb|ACA41003.1| N utilization substance protein B-like protein (NusB-like protein)
           [Lysinibacillus sphaericus C3-41]
          Length = 127

 Score = 57.8 bits (138), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 41/147 (27%), Positives = 67/147 (45%), Gaps = 25/147 (17%)

Query: 15  RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLE----WFR 70
           +R  AR  A+Q L+Q+D                    +T+L VE    H+  +    ++ 
Sbjct: 2   KRHEAREKALQVLFQLD--------------------NTDLTVEEAMGHIKGQPTNVFYE 41

Query: 71  VIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEY 130
            I+ G  +  + ID  +   L EKWS +RL  I  ++LR  V EL+     P  V+++E 
Sbjct: 42  KIVTGTAEHLEEIDATLEQHL-EKWSLARLPKIERTVLRLAVYELLYMPETPKRVVLNEA 100

Query: 131 VCIAHDFFYGDEPKFINAVLDKVSRKE 157
           + +   F      KF+N VL K + +E
Sbjct: 101 IELCKTFGDDSSSKFVNGVLSKFTEQE 127


>gi|45656304|ref|YP_000390.1| transcription antitermination protein NusB [Leptospira interrogans
           serovar Copenhageni str. Fiocruz L1-130]
 gi|45599538|gb|AAS69027.1| transcription termination factor [Leptospira interrogans serovar
           Copenhageni str. Fiocruz L1-130]
          Length = 126

 Score = 57.8 bits (138), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 41/138 (29%), Positives = 70/138 (50%), Gaps = 13/138 (9%)

Query: 26  ALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDL 85
           ALYQ+++      E++ +++ Y    D + + E     V       I++GV+  ++ ID 
Sbjct: 2   ALYQLELTQPPLKEVL-KFKWY----DKKTEPEERDFAVS------IVNGVVKNQEQIDT 50

Query: 86  LISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKF 145
           LI    ++ W FSR+ ++  +ILR  +  L+    VP  V I E V +  +F   +  +F
Sbjct: 51  LIKKY-SKNWDFSRISIVNKAILRLSIYALLYTWEVPKNVTIDEAVELTKEFESEESARF 109

Query: 146 INAVLDKVSRKEEIKRSG 163
           +N VLD +  K EIK  G
Sbjct: 110 VNGVLDAI-LKNEIKSDG 126


>gi|220929324|ref|YP_002506233.1| NusB antitermination factor [Clostridium cellulolyticum H10]
 gi|254772626|sp|B8I3B0|NUSB_CLOCE RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|219999652|gb|ACL76253.1| NusB antitermination factor [Clostridium cellulolyticum H10]
          Length = 145

 Score = 57.8 bits (138), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 41/140 (29%), Positives = 70/140 (50%), Gaps = 12/140 (8%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           R  +R  A++ LYQ++I      E I          +  L+ ES+  + D E+ + I+ G
Sbjct: 3   RRASRETAMKLLYQLEIQKTDRDEQI----------NMALEDESLTKN-DREYIKGIVDG 51

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
           V ++   +D +I    T  W  +RL  I  S+LR G+ E++    +P  V ++E V +A 
Sbjct: 52  VYEKTPVLDGIIEKKAT-GWKINRLSKIDLSVLRIGIYEILYRDDIPFSVSVNEAVELAK 110

Query: 136 DFFYGDEPKFINAVLDKVSR 155
            +   D   F+N +L KVS+
Sbjct: 111 KYSNEDAGAFVNGLLAKVSK 130


>gi|282882096|ref|ZP_06290737.1| transcription antitermination factor NusB [Peptoniphilus lacrimalis
           315-B]
 gi|300814940|ref|ZP_07095168.1| transcription antitermination factor NusB [Peptoniphilus sp. oral
           taxon 836 str. F0141]
 gi|281298126|gb|EFA90581.1| transcription antitermination factor NusB [Peptoniphilus lacrimalis
           315-B]
 gi|300510910|gb|EFK38182.1| transcription antitermination factor NusB [Peptoniphilus sp. oral
           taxon 836 str. F0141]
          Length = 139

 Score = 57.8 bits (138), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 39/136 (28%), Positives = 68/136 (50%), Gaps = 14/136 (10%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEY-ETYRFCADTELDVESVYLHVDLEWFRVIIH 74
           R  AR+ A+Q LY +++    + E I ++ E Y F      + E  Y++        +I 
Sbjct: 3   RKNARVGAMQLLYSMELNKDFSQENIEKFFENYDFS-----ESEQSYINS-------VIS 50

Query: 75  GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134
            +++    +D ++S  L + W+  RL  +   ILR  + E +    +PVEV I+E V IA
Sbjct: 51  ELVNNLDSVDKVLSDNL-QGWTIPRLATVDREILRVAIFEFLYRKDIPVEVSINEAVEIA 109

Query: 135 HDFFYGDEPKFINAVL 150
             +   + PKF+N +L
Sbjct: 110 KKYSSEESPKFVNGIL 125


>gi|255327156|ref|ZP_05368231.1| transcription antitermination factor NusB [Rothia mucilaginosa ATCC
           25296]
 gi|283458028|ref|YP_003362637.1| transcription termination factor [Rothia mucilaginosa DY-18]
 gi|255295774|gb|EET75116.1| transcription antitermination factor NusB [Rothia mucilaginosa ATCC
           25296]
 gi|283134052|dbj|BAI64817.1| transcription termination factor [Rothia mucilaginosa DY-18]
          Length = 136

 Score = 57.8 bits (138), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 40/138 (28%), Positives = 61/138 (44%), Gaps = 14/138 (10%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           R  ARL A++ L++ D       E++     Y     +    E             II G
Sbjct: 4   RTKARLRALEVLFEADQRNEDYIEVLRRRRLYTVAQISAYSEE-------------IIRG 50

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
           V D  + I   + +   + WSF R+  +  ++LR G  EL+    VP  V ISE V +A 
Sbjct: 51  VRDHDEEIREFVETYARD-WSFERMPAVDRAVLRIGTWELLYNDEVPDAVAISEAVGLAR 109

Query: 136 DFFYGDEPKFINAVLDKV 153
                + PKF+N +LDK+
Sbjct: 110 VLSTNESPKFVNGLLDKL 127


>gi|108804294|ref|YP_644231.1| NusB antitermination factor [Rubrobacter xylanophilus DSM 9941]
 gi|119390815|sp|Q1AW09|NUSB_RUBXD RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|108765537|gb|ABG04419.1| NusB antitermination factor [Rubrobacter xylanophilus DSM 9941]
          Length = 139

 Score = 57.8 bits (138), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 36/135 (26%), Positives = 62/135 (45%), Gaps = 15/135 (11%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           R  AR  A   LYQ D+ G     +I  +  YR     EL+          ++   ++ G
Sbjct: 3   RRTARKQAFFILYQSDVTGSPAEPLIGRWRAYR----GELE----------DYAERVVRG 48

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
           V   ++ +D ++   ++E W   R+  +  +ILR  + E++    VP EV ++E V +A 
Sbjct: 49  VERERERLDAVLDG-VSEGWPVWRMSAVDRTILRLALYEMLHVQDVPPEVAVNEAVELAK 107

Query: 136 DFFYGDEPKFINAVL 150
            F   + P F+  VL
Sbjct: 108 GFSGEEAPSFVGGVL 122


>gi|78222837|ref|YP_384584.1| NusB antitermination factor [Geobacter metallireducens GS-15]
 gi|119390772|sp|Q39V65|NUSB_GEOMG RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|78194092|gb|ABB31859.1| NusB antitermination factor [Geobacter metallireducens GS-15]
          Length = 138

 Score = 57.8 bits (138), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 27/83 (32%), Positives = 49/83 (59%), Gaps = 1/83 (1%)

Query: 72  IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
           ++ GV++ ++ ID  I+   ++ W+ SR+  +  +ILR  + EL+    +P  V I+E +
Sbjct: 50  LVRGVLEHRETIDATITEK-SKNWAISRMAKVDLNILRLAIYELLYRGDIPKNVTINEAI 108

Query: 132 CIAHDFFYGDEPKFINAVLDKVS 154
            +A  F   D P FIN +LD+V+
Sbjct: 109 EVAKKFGTEDSPAFINGILDEVA 131


>gi|239917765|ref|YP_002957323.1| transcription antitermination factor NusB [Micrococcus luteus NCTC
           2665]
 gi|239838972|gb|ACS30769.1| transcription antitermination factor NusB [Micrococcus luteus NCTC
           2665]
          Length = 150

 Score = 57.8 bits (138), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 41/138 (29%), Positives = 69/138 (50%), Gaps = 14/138 (10%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           R  +R  AV+ L++ +  G + +E I    T R         ES  L V+  + + ++ G
Sbjct: 18  RSRSRQRAVEILFEAEQRGSTVSEGI---RTRR---------ESTDLQVNA-YTQRLVEG 64

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
           V+  ++ +D  +SS  +  WS  R+  +  +ILR G  EL+    VP  V ISE V +A 
Sbjct: 65  VIADQERLDEALSS-YSRGWSLDRMPAVDRAILRVGAWELLFQDDVPDAVAISEAVALAA 123

Query: 136 DFFYGDEPKFINAVLDKV 153
                D P+F+N +L ++
Sbjct: 124 QLSTDDSPEFVNGLLGRL 141


>gi|261417744|ref|YP_003251426.1| transcription antitermination protein NusB [Geobacillus sp.
           Y412MC61]
 gi|319767444|ref|YP_004132945.1| NusB antitermination factor [Geobacillus sp. Y412MC52]
 gi|261374201|gb|ACX76944.1| NusB antitermination factor [Geobacillus sp. Y412MC61]
 gi|317112310|gb|ADU94802.1| NusB antitermination factor [Geobacillus sp. Y412MC52]
          Length = 130

 Score = 57.8 bits (138), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 41/139 (29%), Positives = 66/139 (47%), Gaps = 16/139 (11%)

Query: 15  RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74
           +R  AR  A+QAL+QID+      E +     +      ++D           + R ++ 
Sbjct: 2   KRHEAREKALQALFQIDVGRIPPDEAL-----HNVTGGGDID----------PFLRQLVF 46

Query: 75  GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134
           GV++ ++ ID L+ + L EKW+  R+  +  +ILR    E+     VPV V + E V +A
Sbjct: 47  GVVEHQEEIDELLRANL-EKWTLERVANVDRAILRMATYEMKYADDVPVSVSLDEAVELA 105

Query: 135 HDFFYGDEPKFINAVLDKV 153
             F       F+N VL KV
Sbjct: 106 KTFGDWKSGSFVNGVLSKV 124


>gi|19552830|ref|NP_600832.1| transcription antitermination protein NusB [Corynebacterium
           glutamicum ATCC 13032]
 gi|62390501|ref|YP_225903.1| transcription antitermination protein NusB [Corynebacterium
           glutamicum ATCC 13032]
 gi|24638069|sp|Q8NQ33|NUSB_CORGL RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|21324387|dbj|BAB99011.1| Transcription termination factor [Corynebacterium glutamicum ATCC
           13032]
 gi|41325838|emb|CAF21627.1| Transcription termination factor [Corynebacterium glutamicum ATCC
           13032]
          Length = 227

 Score = 57.8 bits (138), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 45/159 (28%), Positives = 72/159 (45%), Gaps = 7/159 (4%)

Query: 3   IQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYL 62
           + + ++D K    R  AR+ AV  L++ +        II +   ++   DT   V  V  
Sbjct: 1   MSERRQDYKRHGSRYKARMRAVDILFEAESRDVDPVAIIDDR--HKLARDTNPIVAPV-- 56

Query: 63  HVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVP 122
               E+   II+GV      +D+ ++  + E W+  RL  +  +ILR    E+I    VP
Sbjct: 57  ---AEYTETIINGVAVELDTLDVFLAEHIAETWTLGRLPSVDRAILRVASWEMIYNADVP 113

Query: 123 VEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKR 161
           V   I E V IA ++       +INA LD ++ K E  R
Sbjct: 114 VTTAIVEAVEIASEYSGDKSSAYINATLDAMASKVETLR 152


>gi|120598061|ref|YP_962635.1| transcription antitermination protein NusB [Shewanella sp. W3-18-1]
 gi|166215720|sp|A1RHD6|NUSB_SHESW RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|120558154|gb|ABM24081.1| NusB antitermination factor [Shewanella sp. W3-18-1]
          Length = 134

 Score = 57.8 bits (138), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 48/148 (32%), Positives = 73/148 (49%), Gaps = 15/148 (10%)

Query: 10  LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF 69
           +K S RR   RLA VQA+Y   + G +  ++  E+E   F  +  LD       VD+ +F
Sbjct: 1   MKPSERRKARRLA-VQAIYSWQLSGNNIADV--EHE---FLTEQSLD------GVDVAYF 48

Query: 70  RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISE 129
           R +  GV  +K  +D LI   L        +  +  +I+R    EL     VP +V I+E
Sbjct: 49  RELFSGVATKKPQLDELIIPHLER--PIDEVSPVEKAIVRLATYELTFRKDVPYKVAINE 106

Query: 130 YVCIAHDFFYGDEPKFINAVLDK-VSRK 156
            + +A  F   +  KF+N +LDK V+RK
Sbjct: 107 AIELAKAFGADESHKFVNGLLDKLVARK 134


>gi|194016988|ref|ZP_03055601.1| transcription antitermination factor NusB [Bacillus pumilus ATCC
           7061]
 gi|194011594|gb|EDW21163.1| transcription antitermination factor NusB [Bacillus pumilus ATCC
           7061]
          Length = 131

 Score = 57.4 bits (137), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 43/154 (27%), Positives = 73/154 (47%), Gaps = 30/154 (19%)

Query: 15  RRGIARLAAVQALYQIDIIGCSTTEIIS----EYETYRFCADTELDVESVYLHVDLEWFR 70
           +R  AR  A+Q L+QID+      E I+    E E+  F                   F 
Sbjct: 2   KRRTAREKALQTLFQIDVSNIDPKEAITHALDEQESDPF-------------------FE 42

Query: 71  VIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEY 130
            ++ GV+++K  +D +IS  L   W   R+  +  +ILR  V E++    +PV V ++E 
Sbjct: 43  ELVFGVLEQKDKLDDMISQHLV-NWKLDRIANVDRAILRLSVYEMVYQEDIPVSVSMNEA 101

Query: 131 VCIAHDFFYGDEP--KFINAVLDKVSRKEEIKRS 162
           + +A    +GD+   KF+N VL  +  K ++K+ 
Sbjct: 102 IELAK--LFGDDKASKFVNGVLSNI--KNDLKQQ 131


>gi|15594453|ref|NP_212241.1| transcription antitermination protein NusB [Borrelia burgdorferi
           B31]
 gi|7387971|sp|O51134|NUSB_BORBU RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|2687995|gb|AAC66498.1| N-utilization substance protein B (nusB) [Borrelia burgdorferi B31]
          Length = 145

 Score = 57.4 bits (137), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 41/140 (29%), Positives = 67/140 (47%), Gaps = 9/140 (6%)

Query: 20  RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79
           R+ A Q +Y IDI   +  +I   +       D +LD+E+  +     ++  ++ G  D 
Sbjct: 8   RVLAFQKIYSIDINQSAMDDIFDIFN----IEDKDLDIENESIK---SFYSSLVIGTFDN 60

Query: 80  KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLEL-IECHSVPVEVIISEYVCIAHDFF 138
            +HID LI   ++  WS  R+D +  +ILR GV  L  +        II E + IA  + 
Sbjct: 61  LEHIDSLIRD-ISLNWSLERMDKVDLAILRMGVYSLKFQNFENSKRAIIDEAILIAKKYG 119

Query: 139 YGDEPKFINAVLDKVSRKEE 158
             +  KFIN +LD + +  E
Sbjct: 120 SKNSYKFINGILDALLKNME 139


>gi|256391589|ref|YP_003113153.1| NusB antitermination factor [Catenulispora acidiphila DSM 44928]
 gi|256357815|gb|ACU71312.1| NusB antitermination factor [Catenulispora acidiphila DSM 44928]
          Length = 145

 Score = 57.4 bits (137), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 36/151 (23%), Positives = 74/151 (49%), Gaps = 7/151 (4%)

Query: 12  LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71
           ++  R  AR  A++ L++ D+ G     ++++ +        E  +  V       +   
Sbjct: 1   MASPRSKARQRALEILFEADLRGVDPRTVLADTQARIRAQGPEGTIPQVQ-----PYAAT 55

Query: 72  IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
           ++ GV++    ID L+    +E W+  R+  +  ++LR GV EL+    VP  V++ E V
Sbjct: 56  LVEGVLEHVDKIDDLLDEH-SEGWALDRMPTVDRNVLRIGVYELLWQSDVPDAVVLDEAV 114

Query: 132 CIAHDFFYGDEPKFINAVLDKVSR-KEEIKR 161
            +A      + P+F+N +L +++  K+ +KR
Sbjct: 115 SLARLMSTDESPQFVNGLLARIAEVKDSLKR 145


>gi|78188395|ref|YP_378733.1| NusB antitermination factor [Chlorobium chlorochromatii CaD3]
 gi|119390755|sp|Q3ATI5|NUSB_CHLCH RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|78170594|gb|ABB27690.1| NusB antitermination factor [Chlorobium chlorochromatii CaD3]
          Length = 169

 Score = 57.4 bits (137), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 43/154 (27%), Positives = 76/154 (49%), Gaps = 15/154 (9%)

Query: 13  SHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVI 72
           ++RR I R   +QALY +++ G +  E      T    AD             +++F ++
Sbjct: 3   TYRRQI-REKILQALYTVELRGITLDEAAGWLLTEEILADPNA----------MKFFNLL 51

Query: 73  IHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVC 132
           +  +   ++ ID  I+   T  W  SR+ +I  +I+R  + E++ C  +P +V I+E + 
Sbjct: 52  LSSIKAHREEIDNYIAQQ-TFNWDMSRIAIIDKNIIRMALTEILYCEDIPPKVSINEAIE 110

Query: 133 IAHDFFYGDE-PKFINAVLDKVSRKEEIKRSGCV 165
           IA  F   D+  KF+N +LD +  K  +K  G V
Sbjct: 111 IAKKFNSTDKSSKFVNGILDAIFNK--LKTEGKV 142


>gi|126175357|ref|YP_001051506.1| transcription antitermination protein NusB [Shewanella baltica
           OS155]
 gi|146293868|ref|YP_001184292.1| transcription antitermination protein NusB [Shewanella putrefaciens
           CN-32]
 gi|153001667|ref|YP_001367348.1| transcription antitermination protein NusB [Shewanella baltica
           OS185]
 gi|160876405|ref|YP_001555721.1| transcription antitermination protein NusB [Shewanella baltica
           OS195]
 gi|217972400|ref|YP_002357151.1| transcription antitermination protein NusB [Shewanella baltica
           OS223]
 gi|304410187|ref|ZP_07391806.1| NusB antitermination factor [Shewanella baltica OS183]
 gi|307302102|ref|ZP_07581860.1| NusB antitermination factor [Shewanella baltica BA175]
 gi|166215715|sp|A3D7C4|NUSB_SHEB5 RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|166215716|sp|A6WR46|NUSB_SHEB8 RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|166215718|sp|A4Y960|NUSB_SHEPC RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|189035904|sp|A9KYJ0|NUSB_SHEB9 RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|254772654|sp|B8E6W7|NUSB_SHEB2 RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|125998562|gb|ABN62637.1| NusB antitermination factor [Shewanella baltica OS155]
 gi|145565558|gb|ABP76493.1| NusB antitermination factor [Shewanella putrefaciens CN-32]
 gi|151366285|gb|ABS09285.1| NusB antitermination factor [Shewanella baltica OS185]
 gi|160861927|gb|ABX50461.1| NusB antitermination factor [Shewanella baltica OS195]
 gi|217497535|gb|ACK45728.1| NusB antitermination factor [Shewanella baltica OS223]
 gi|304351596|gb|EFM15995.1| NusB antitermination factor [Shewanella baltica OS183]
 gi|306914140|gb|EFN44561.1| NusB antitermination factor [Shewanella baltica BA175]
 gi|315268595|gb|ADT95448.1| NusB antitermination factor [Shewanella baltica OS678]
 gi|319427240|gb|ADV55314.1| NusB antitermination factor [Shewanella putrefaciens 200]
          Length = 134

 Score = 57.4 bits (137), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 48/148 (32%), Positives = 73/148 (49%), Gaps = 15/148 (10%)

Query: 10  LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF 69
           +K S RR   RLA VQA+Y   + G +  ++  E+E   F  +  LD       VD+ +F
Sbjct: 1   MKPSERRKARRLA-VQAIYSWQLSGNNIADV--EHE---FLTEQSLD------GVDVAYF 48

Query: 70  RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISE 129
           R +  GV  +K  +D LI   L        +  +  +I+R    EL     VP +V I+E
Sbjct: 49  RELFSGVATKKTQLDELIIPHLER--PIDEVSPVEKAIVRLATYELTFRKDVPYKVAINE 106

Query: 130 YVCIAHDFFYGDEPKFINAVLDK-VSRK 156
            + +A  F   +  KF+N +LDK V+RK
Sbjct: 107 AIELAKAFGADESHKFVNGLLDKLVARK 134


>gi|301170042|emb|CBW29646.1| transcription antitermination protein [Haemophilus influenzae
           10810]
          Length = 144

 Score = 57.4 bits (137), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 44/148 (29%), Positives = 71/148 (47%), Gaps = 13/148 (8%)

Query: 7   KKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDL 66
           +K +K    R  AR   VQALY   + G +  ++        F  D +++       VD 
Sbjct: 4   QKQVKKPSARRRARECTVQALYSWAVSGNTAEQV-----ELAFVLDQDME------GVDK 52

Query: 67  EWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVI 126
            +FR +    ++  + +D  IS  +    +F  LD I  +ILR  V EL     VP +V+
Sbjct: 53  PYFRKLFRQTIENIETVDFSISPYIDR--AFDELDPIETAILRLAVYELRFELDVPYKVV 110

Query: 127 ISEYVCIAHDFFYGDEPKFINAVLDKVS 154
           I+E + +A  F   +  K+IN VLDK++
Sbjct: 111 INEAIEVAKVFGADESHKYINGVLDKIA 138


>gi|313887990|ref|ZP_07821668.1| transcription antitermination factor NusB [Peptoniphilus harei
           ACS-146-V-Sch2b]
 gi|312845945|gb|EFR33328.1| transcription antitermination factor NusB [Peptoniphilus harei
           ACS-146-V-Sch2b]
          Length = 132

 Score = 57.4 bits (137), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 40/145 (27%), Positives = 73/145 (50%), Gaps = 16/145 (11%)

Query: 12  LSHRRGIARLAAVQALYQIDIIGCSTTEIISEY-ETYRFCADTELDVESVYLHVDLEWFR 70
           +S +R  AR+ A+QAL+ +D+    +T+ +  + E + F  D            ++++ +
Sbjct: 1   MSRKR--ARIGAMQALFAMDVNDDFSTDKLDLFMENHEFQGD------------EVDYIK 46

Query: 71  VIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEY 130
             +  ++D+   +D  I   L + W+ +RL  +   ILR  V E +    +P EV I+E 
Sbjct: 47  RTVPDILDKLDLVDETIEKNL-KGWTMARLAKVDRQILRIAVYEFLYKDDIPEEVSINEA 105

Query: 131 VCIAHDFFYGDEPKFINAVLDKVSR 155
           V IA  +   + PKFIN +L  + R
Sbjct: 106 VEIARLYSSDEAPKFINGILGTIYR 130


>gi|188534655|ref|YP_001908452.1| transcription antitermination protein NusB [Erwinia tasmaniensis
           Et1/99]
 gi|238691979|sp|B2VHS8|NUSB_ERWT9 RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|188029697|emb|CAO97576.1| N utilization substance protein B [Erwinia tasmaniensis Et1/99]
          Length = 139

 Score = 57.4 bits (137), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 43/132 (32%), Positives = 66/132 (50%), Gaps = 13/132 (9%)

Query: 23  AVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQH 82
           AVQALY   I      ++      Y+F A  E DV+ V    D+ +FR ++ GV     +
Sbjct: 13  AVQALYSWQISKNDIADV-----EYQFLA--EQDVKDV----DITYFRELVGGVATNSAY 61

Query: 83  IDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDE 142
           +D L+   L+ +     L  +  +ILR  + EL +   VP +V I+E + +A  F   D 
Sbjct: 62  LDGLMKPYLSRQ--LEELGQVEKAILRISLFELSKRSDVPYKVAINEGIELAKVFGAEDS 119

Query: 143 PKFINAVLDKVS 154
            KF+N VLDK +
Sbjct: 120 HKFVNGVLDKAA 131


>gi|238898983|ref|YP_002924665.1| transcription termination; L factor [Candidatus Hamiltonella
           defensa 5AT (Acyrthosiphon pisum)]
 gi|259514851|sp|C4K7H4|NUSB_HAMD5 RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|229466743|gb|ACQ68517.1| transcription termination; L factor [Candidatus Hamiltonella
           defensa 5AT (Acyrthosiphon pisum)]
          Length = 151

 Score = 57.4 bits (137), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 48/145 (33%), Positives = 70/145 (48%), Gaps = 14/145 (9%)

Query: 10  LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF 69
           +  S RR  AR   VQALY   +    +   I+E E   F AD E          D+ +F
Sbjct: 1   MNPSARRR-ARECVVQALYAWQV----SQNDIAEVE-LSFLADQETQ------GADIAYF 48

Query: 70  RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISE 129
           R ++ GV    + +D L++  L+ +  F  L  I  +ILR  + EL +   VP +V I+E
Sbjct: 49  RHVLLGVASDVEALDTLMTPYLSRQ--FQELGQIEKAILRLAMFELNKRDDVPYKVTINE 106

Query: 130 YVCIAHDFFYGDEPKFINAVLDKVS 154
            + +   F   D  KFIN VLDK +
Sbjct: 107 AIELGKTFGADDSHKFINGVLDKAA 131


>gi|196248859|ref|ZP_03147559.1| NusB antitermination factor [Geobacillus sp. G11MC16]
 gi|196211735|gb|EDY06494.1| NusB antitermination factor [Geobacillus sp. G11MC16]
          Length = 130

 Score = 57.4 bits (137), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 44/139 (31%), Positives = 62/139 (44%), Gaps = 16/139 (11%)

Query: 15  RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74
           +R  AR  A+QAL+QID+      E I            E+D           + R ++ 
Sbjct: 2   KRHEAREKALQALFQIDVGHIPPDEAIGN-----VTGSGEVD----------PFLRQLVF 46

Query: 75  GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134
           GV++ +  ID L+ S L EKW   R+  +   ILR    E+     VPV V + E V +A
Sbjct: 47  GVIEHRAEIDELLRSNL-EKWKLERVANVDRVILRMATYEMKYVDDVPVSVSLDEAVELA 105

Query: 135 HDFFYGDEPKFINAVLDKV 153
             F       F+N VL KV
Sbjct: 106 KKFGDWKSGSFVNGVLSKV 124


>gi|145295740|ref|YP_001138561.1| transcription antitermination protein NusB [Corynebacterium
           glutamicum R]
 gi|140845660|dbj|BAF54659.1| hypothetical protein [Corynebacterium glutamicum R]
          Length = 212

 Score = 57.4 bits (137), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 45/164 (27%), Positives = 73/164 (44%), Gaps = 7/164 (4%)

Query: 3   IQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYL 62
           + + ++D K    R  AR+ AV  L++ +        II +   ++   DT   V  V  
Sbjct: 1   MSERRQDYKRHGSRYKARMRAVDILFEAESRDVDPVAIIDDR--HKLARDTNPIVAPV-- 56

Query: 63  HVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVP 122
               E+   II+GV      +D+ ++  + E W+  RL  +  +ILR    E+I    VP
Sbjct: 57  ---AEYTETIINGVAVELDTLDVFLAEHIAETWTLGRLPSVDRAILRVASWEMIYNTDVP 113

Query: 123 VEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRSGCVS 166
           V   I E V IA ++       +INA LD ++ K E  R    +
Sbjct: 114 VTTAIVEAVEIASEYSGDKSSAYINATLDAMASKVETLRERAAN 157


>gi|332703471|ref|ZP_08423559.1| NusB antitermination factor [Desulfovibrio africanus str. Walvis
           Bay]
 gi|332553620|gb|EGJ50664.1| NusB antitermination factor [Desulfovibrio africanus str. Walvis
           Bay]
          Length = 161

 Score = 57.4 bits (137), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 45/149 (30%), Positives = 73/149 (48%), Gaps = 14/149 (9%)

Query: 11  KLSHRRGIARLAAVQALYQIDIIGCSTTEIISEY--ETYRFCADTELDVESVYLHVDLEW 68
           K S RR  AR  A Q LY I+    S    + +   E  R    T+LD +S     +L  
Sbjct: 5   KKSARR-FAREKAFQVLYGIEFTDSSHLGAVRDAFVEYPRPERQTKLDEKSDTFAWEL-- 61

Query: 69  FRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIIS 128
               + G  + K  +D +I    ++ W  +R+  +  +ILR G+ E++    +P++V I+
Sbjct: 62  ----VKGTWESKAELDGIIGR-FSQNWKVTRIAKVDLTILRLGMFEILHRPDIPLKVAIN 116

Query: 129 EYVCIAHDFFYGDE--PKFINAVLDKVSR 155
           E V +A +F  GDE    F+N +LD  +R
Sbjct: 117 EAVELAKEF--GDEHSRNFVNGILDAAAR 143


>gi|114562217|ref|YP_749730.1| transcription antitermination protein NusB [Shewanella
           frigidimarina NCIMB 400]
 gi|119390819|sp|Q086C3|NUSB_SHEFN RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|114333510|gb|ABI70892.1| NusB antitermination factor [Shewanella frigidimarina NCIMB 400]
          Length = 134

 Score = 57.4 bits (137), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 44/144 (30%), Positives = 67/144 (46%), Gaps = 14/144 (9%)

Query: 10  LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF 69
           +K S RR   RLA VQA+Y   +      ++  E+ T           E     VD+ +F
Sbjct: 1   MKPSERRKARRLA-VQAIYSWQLSQNKVADVEHEFLT-----------EQNTDGVDVAYF 48

Query: 70  RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISE 129
           R ++ GV  +   ID L+   L  K  F  +  +  +I+R    EL     VP +V I+E
Sbjct: 49  RELLTGVASKTSQIDELLKPHLDRK--FEEVSPVEKAIVRLATYELTFRKDVPFKVAINE 106

Query: 130 YVCIAHDFFYGDEPKFINAVLDKV 153
            + +A  F   D  KF+N +LDK+
Sbjct: 107 GIELAKAFGAEDSHKFVNGLLDKL 130


>gi|24374971|ref|NP_719014.1| transcription antitermination protein NusB [Shewanella oneidensis
           MR-1]
 gi|32171648|sp|Q8EBP4|NUSB_SHEON RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|24349697|gb|AAN56458.1|AE015783_1 N utilization substance protein B [Shewanella oneidensis MR-1]
          Length = 134

 Score = 57.0 bits (136), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 48/148 (32%), Positives = 73/148 (49%), Gaps = 15/148 (10%)

Query: 10  LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF 69
           +K S RR   RLA VQA+Y   + G +  ++  E+E   F  +  LD       VD+ +F
Sbjct: 1   MKPSERRKARRLA-VQAIYSWQLSGNNIADV--EHE---FLTEQSLD------GVDVAYF 48

Query: 70  RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISE 129
           R +  GV  +K  +D LI   L        +  +  +I+R    EL     VP +V I+E
Sbjct: 49  RELFAGVATKKTQLDELIIPHLDR--PIDEVSPVEKAIVRLAAYELTFRKDVPFKVAINE 106

Query: 130 YVCIAHDFFYGDEPKFINAVLDK-VSRK 156
            + +A  F   +  KF+N +LDK V+RK
Sbjct: 107 AIELAKAFGADESHKFVNGLLDKLVARK 134


>gi|289706203|ref|ZP_06502566.1| transcription antitermination factor NusB [Micrococcus luteus SK58]
 gi|289557042|gb|EFD50370.1| transcription antitermination factor NusB [Micrococcus luteus SK58]
          Length = 150

 Score = 57.0 bits (136), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 41/138 (29%), Positives = 68/138 (49%), Gaps = 14/138 (10%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           R  +R  AV+ L++ +  G +  E I    T R         ES  L V+  + + ++ G
Sbjct: 18  RSRSRQRAVEILFEAEQRGSTALEGI---RTRR---------ESTDLQVNA-YTQRLVEG 64

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
           V+  ++ +D  +SS  +  WS  R+  +  +ILR G  EL+    VP  V ISE V +A 
Sbjct: 65  VIADQERLDEALSSY-SRGWSLDRMPAVDLAILRVGAWELLFQDDVPDAVAISEAVALAA 123

Query: 136 DFFYGDEPKFINAVLDKV 153
                D P+F+N +L ++
Sbjct: 124 QLSTDDSPEFVNGLLGRL 141


>gi|190570484|ref|YP_001974842.1| N utilization substance protein B [Wolbachia endosymbiont of Culex
           quinquefasciatus Pel]
 gi|213019243|ref|ZP_03335050.1| N utilization substance protein B [Wolbachia endosymbiont of Culex
           quinquefasciatus JHB]
 gi|190356756|emb|CAQ54115.1| N utilization substance protein B [Wolbachia endosymbiont of Culex
           quinquefasciatus Pel]
 gi|212995352|gb|EEB55993.1| N utilization substance protein B [Wolbachia endosymbiont of Culex
           quinquefasciatus JHB]
          Length = 160

 Score = 57.0 bits (136), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 50/158 (31%), Positives = 69/158 (43%), Gaps = 27/158 (17%)

Query: 9   DLKLSHRRGIARLAAVQALYQ----------IDIIGCSTTEIISEYETYRFCADTELDVE 58
           D K   +R  AR  AVQ  Y             +  C   + IS  +    C + E    
Sbjct: 7   DKKWRIKRSTARFLAVQIAYSNIFVSYNKSTFKLENCELKDYISTLKDIFECEEFE---- 62

Query: 59  SVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIEC 118
               H   ++   ++  V+   +  D +I S L   WS SRL++I  SILR  V ELI+ 
Sbjct: 63  ----H---QFLENLLCKVIKSSEEYDKIIESYLHPSWSLSRLNLISLSILRIAVCELID- 114

Query: 119 HSVPVEVIISEYVCIAHDFFYGDEPK---FINAVLDKV 153
              P  ++I+EY  IA D    D P    FIN +LDKV
Sbjct: 115 FDTPAPIVINEYTNIASDLL--DAPNKIGFINGLLDKV 150


>gi|317047151|ref|YP_004114799.1| NusB antitermination factor [Pantoea sp. At-9b]
 gi|316948768|gb|ADU68243.1| NusB antitermination factor [Pantoea sp. At-9b]
          Length = 139

 Score = 57.0 bits (136), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 42/132 (31%), Positives = 66/132 (50%), Gaps = 13/132 (9%)

Query: 23  AVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQH 82
           AVQALY   +      ++      Y+F A  E DV+ V    D+ +FR ++ GV     +
Sbjct: 13  AVQALYSWQLSNNDIADV-----EYQFLA--EQDVKDV----DISYFRELLSGVATNSAY 61

Query: 83  IDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDE 142
           +D L+   L+ +     L  +  +ILR  + EL +   VP +V I+E + +A  F   D 
Sbjct: 62  LDGLMKPYLSRQ--LEELGQVEKAILRISLFELSKRSDVPYKVAINEGIELAKVFGAEDS 119

Query: 143 PKFINAVLDKVS 154
            KF+N VLDK +
Sbjct: 120 HKFVNGVLDKAA 131


>gi|295695401|ref|YP_003588639.1| NusB antitermination factor [Bacillus tusciae DSM 2912]
 gi|295411003|gb|ADG05495.1| NusB antitermination factor [Bacillus tusciae DSM 2912]
          Length = 148

 Score = 57.0 bits (136), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 35/138 (25%), Positives = 68/138 (49%), Gaps = 5/138 (3%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           R  AR   +QAL  +D+ G    E + +   +R   D E   E      D ++ R ++ G
Sbjct: 3   RRAAREKVLQALVAVDLGGTDAEEALEQ--VWRLRGDEE--AEGDPSPEDADFARGLLFG 58

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
            ++  + +D ++ +  T  W   R+  +  ++LR  V EL+   + PV V+++E V +A 
Sbjct: 59  TLEEGRRVDGVLRTYST-GWDLDRMASVDRNVLRLAVYELLHVPATPVSVVMNEAVELAK 117

Query: 136 DFFYGDEPKFINAVLDKV 153
            +   +  +F+N VL ++
Sbjct: 118 RYSTEESGRFVNGVLARI 135


>gi|256379255|ref|YP_003102915.1| NusB antitermination factor [Actinosynnema mirum DSM 43827]
 gi|255923558|gb|ACU39069.1| NusB antitermination factor [Actinosynnema mirum DSM 43827]
          Length = 139

 Score = 57.0 bits (136), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 41/139 (29%), Positives = 66/139 (47%), Gaps = 13/139 (9%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           R  AR  AV  +Y+ D  G     ++S+    R  +    DV  +      E+   ++ G
Sbjct: 4   RTKARKRAVDVIYEADQRGVDAVTLLSD----RVGS---TDVPPIN-----EYTVSLVEG 51

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
           V   +  ID LIS   +E W+  R+  +  ++LR G+ EL+    VP  V I E V +A 
Sbjct: 52  VTAHRARIDDLISEH-SEGWTLQRMPAVDRAVLRVGLYELLWAADVPDAVAIDEAVELAK 110

Query: 136 DFFYGDEPKFINAVLDKVS 154
                D P+F+N VL +++
Sbjct: 111 GLSTDDSPRFVNGVLGRIA 129


>gi|74318210|ref|YP_315950.1| NusB antitermination factor [Thiobacillus denitrificans ATCC 25259]
 gi|119390844|sp|Q3SGU8|NUSB_THIDA RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|74057705|gb|AAZ98145.1| NusB antitermination factor [Thiobacillus denitrificans ATCC 25259]
          Length = 145

 Score = 57.0 bits (136), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 42/144 (29%), Positives = 67/144 (46%), Gaps = 13/144 (9%)

Query: 12  LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71
           ++  R +AR   +Q +Y   I G   T I +            L  +  +   D  +FR 
Sbjct: 1   MAGSRKVAREFTLQGIYAWMIGGADVTLIAAN-----------LKEDEQFKRADEAYFRT 49

Query: 72  IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
           +++GV+  +  +   I+  L    + + L  I  SIL  G  EL+ C  VP  V I+E V
Sbjct: 50  LLYGVLKEEDMLSSRIAPLLDR--AVAELSPIERSILLIGAYELLHCPDVPWRVAINESV 107

Query: 132 CIAHDFFYGDEPKFINAVLDKVSR 155
            +A  F   D  K+IN VLDK+++
Sbjct: 108 ELAKKFGGTDGHKYINGVLDKLAQ 131


>gi|146297126|ref|YP_001180897.1| NusB antitermination factor [Caldicellulosiruptor saccharolyticus
           DSM 8903]
 gi|254772620|sp|A4XLC1|NUSB_CALS8 RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|145410702|gb|ABP67706.1| NusB antitermination factor [Caldicellulosiruptor saccharolyticus
           DSM 8903]
          Length = 142

 Score = 57.0 bits (136), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 34/121 (28%), Positives = 63/121 (52%), Gaps = 3/121 (2%)

Query: 42  SEYETYRFCAD-TELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRL 100
           +EY+   F     EL+ +  +  +D E+ + ++ GV+  +Q ID LI    ++ W  SR+
Sbjct: 23  NEYDIIEFLNKFKELNPDENFKEIDEEYLKKLLTGVIRNQQLIDNLIEKY-SKDWPLSRI 81

Query: 101 DMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIK 160
            M+   ++R  + EL+    +P+ V I E V ++  F     P F+N +L  ++   E+K
Sbjct: 82  PMVELELMRIAIYELLFEEEIPISVAIDEAVDLSSIFGVEKAPSFVNGILGSIAVN-EVK 140

Query: 161 R 161
           R
Sbjct: 141 R 141


>gi|68171632|ref|ZP_00544999.1| N utilization substance protein B, putative [Ehrlichia chaffeensis
           str. Sapulpa]
 gi|88658441|ref|YP_507582.1| putative N utilization substance protein B [Ehrlichia chaffeensis
           str. Arkansas]
 gi|67998953|gb|EAM85637.1| N utilization substance protein B, putative [Ehrlichia chaffeensis
           str. Sapulpa]
 gi|88599898|gb|ABD45367.1| putative N utilization substance protein B [Ehrlichia chaffeensis
           str. Arkansas]
          Length = 174

 Score = 57.0 bits (136), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 41/139 (29%), Positives = 68/139 (48%), Gaps = 6/139 (4%)

Query: 15  RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74
           ++   R  A+Q  Y + I    T   I     Y +     LD+    + +D +    I++
Sbjct: 14  KKTTTRFLAIQGTYSM-IFNNYTINDIDNLIDYLYEMKEVLDL----IQIDNQLLLKIMN 68

Query: 75  GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134
            ++     I+  I++ L EKWS  R+++I  SI++  V ELI C      +II+EYV IA
Sbjct: 69  TMLLTFNTINSTIATFLNEKWSIDRINLISLSIIKTAVCELI-CSDTDAVIIINEYVNIA 127

Query: 135 HDFFYGDEPKFINAVLDKV 153
                  +  FINA+L++V
Sbjct: 128 SHILERTDVNFINAILNQV 146


>gi|89256034|ref|YP_513396.1| N utilisation substance protein B [Francisella tularensis subsp.
           holarctica LVS]
 gi|115314512|ref|YP_763235.1| N utilization substance protein B [Francisella tularensis subsp.
           holarctica OSU18]
 gi|156502045|ref|YP_001428109.1| transcription antitermination factor [Francisella tularensis subsp.
           holarctica FTNF002-00]
 gi|167010215|ref|ZP_02275146.1| transcription antitermination factor NusB [Francisella tularensis
           subsp. holarctica FSC200]
 gi|254367376|ref|ZP_04983402.1| N utilisation substance protein B [Francisella tularensis subsp.
           holarctica 257]
 gi|290953937|ref|ZP_06558558.1| transcription antitermination factor [Francisella tularensis subsp.
           holarctica URFT1]
 gi|295312686|ref|ZP_06803431.1| transcription antitermination factor [Francisella tularensis subsp.
           holarctica URFT1]
 gi|89143865|emb|CAJ79083.1| N utilisation substance protein B [Francisella tularensis subsp.
           holarctica LVS]
 gi|115129411|gb|ABI82598.1| N utilization substance protein B [Francisella tularensis subsp.
           holarctica OSU18]
 gi|134253192|gb|EBA52286.1| N utilisation substance protein B [Francisella tularensis subsp.
           holarctica 257]
 gi|156252648|gb|ABU61154.1| transcription antitermination factor [Francisella tularensis subsp.
           holarctica FTNF002-00]
          Length = 141

 Score = 57.0 bits (136), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 47/147 (31%), Positives = 70/147 (47%), Gaps = 13/147 (8%)

Query: 10  LKLSHR-RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEW 68
           +K + R R  ARL AVQALYQ  I   + +E+  +Y  Y   AD          + D + 
Sbjct: 1   MKTTARARNNARLYAVQALYQKKIADNTFSELKIQY--YADNADRH--------YTDWDL 50

Query: 69  FRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIIS 128
           F  +I  V   +  ID  I    +       ++ +   +L+  + ELIEC   P +VII 
Sbjct: 51  FYRLIDAVKTNQDTIDKYIKENSSN--GVESINYVDYVVLQVAIAELIECLENPYQVIIK 108

Query: 129 EYVCIAHDFFYGDEPKFINAVLDKVSR 155
           EYV I +     +  KFINAVL  +++
Sbjct: 109 EYVEICYSMGTEEGYKFINAVLQNLAK 135


>gi|294501203|ref|YP_003564903.1| transcription antitermination factor NusB [Bacillus megaterium QM
           B1551]
 gi|295706550|ref|YP_003599625.1| transcription antitermination factor NusB [Bacillus megaterium DSM
           319]
 gi|294351140|gb|ADE71469.1| transcription antitermination factor NusB [Bacillus megaterium QM
           B1551]
 gi|294804209|gb|ADF41275.1| transcription antitermination factor NusB [Bacillus megaterium DSM
           319]
          Length = 130

 Score = 57.0 bits (136), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 41/139 (29%), Positives = 65/139 (46%), Gaps = 16/139 (11%)

Query: 15  RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74
           +R  AR  A+QAL+Q D+      E I          + + D          ++   ++ 
Sbjct: 2   KRHTARQKALQALFQHDLGQTEPMEAIG-----NVVQNEKSD----------QFLESLVL 46

Query: 75  GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134
           GV++ +Q ID L+ + L EKW+  R+  +   ILR  V E+     +P  V ++E + +A
Sbjct: 47  GVVEHQQEIDELLRNHL-EKWTLDRVATVDRVILRIAVYEMKYEEEIPTSVTLNEAIELA 105

Query: 135 HDFFYGDEPKFINAVLDKV 153
             F      KFIN VL KV
Sbjct: 106 KTFGDDQSSKFINGVLSKV 124


>gi|304395478|ref|ZP_07377361.1| NusB antitermination factor [Pantoea sp. aB]
 gi|304356772|gb|EFM21136.1| NusB antitermination factor [Pantoea sp. aB]
          Length = 139

 Score = 57.0 bits (136), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 42/132 (31%), Positives = 66/132 (50%), Gaps = 13/132 (9%)

Query: 23  AVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQH 82
           AVQALY   +      ++      Y+F A  E DV+ V    D+ +FR ++ GV     +
Sbjct: 13  AVQALYSWQLSNNDIADV-----EYQFLA--EQDVKDV----DITYFRELLSGVATNSAY 61

Query: 83  IDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDE 142
           +D L+   L+ +     L  +  +ILR  + EL + + VP +V I+E + +A  F   D 
Sbjct: 62  LDGLMKPYLSRQ--LEELGQVEKAILRISLYELSKRNDVPYKVAINEGIELAKVFGAEDS 119

Query: 143 PKFINAVLDKVS 154
            KF+N VLDK  
Sbjct: 120 HKFVNGVLDKAG 131


>gi|239939930|ref|ZP_04691867.1| transcription antitermination protein NusB [Streptomyces
           roseosporus NRRL 15998]
 gi|239986415|ref|ZP_04707079.1| transcription antitermination protein NusB [Streptomyces
           roseosporus NRRL 11379]
 gi|291443361|ref|ZP_06582751.1| transcription antitermination protein NusB [Streptomyces
           roseosporus NRRL 15998]
 gi|291346308|gb|EFE73212.1| transcription antitermination protein NusB [Streptomyces
           roseosporus NRRL 15998]
          Length = 143

 Score = 57.0 bits (136), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 37/135 (27%), Positives = 60/135 (44%), Gaps = 9/135 (6%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           R  AR  A Q L++ D  G S   +++++  +    D +  V    +         ++ G
Sbjct: 4   RNKARKRAFQILFEADQRGASVQSVLADWVRHSRTDDRQPPVGEFTME--------LVEG 55

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
                  ID LI +   + W   R+ ++  +ILR G  ELI     P  V+I E V +A 
Sbjct: 56  YAQYADRIDDLIVTYAVD-WEIDRMPVVDRNILRLGAYELIWMDETPDAVVIDEAVQLAK 114

Query: 136 DFFYGDEPKFINAVL 150
           +F   D P F+N +L
Sbjct: 115 EFSTDDSPSFVNGLL 129


>gi|83590364|ref|YP_430373.1| NusB antitermination factor [Moorella thermoacetica ATCC 39073]
 gi|119390785|sp|Q2RIA9|NUSB_MOOTA RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|83573278|gb|ABC19830.1| NusB antitermination factor [Moorella thermoacetica ATCC 39073]
          Length = 145

 Score = 57.0 bits (136), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 37/140 (26%), Positives = 65/140 (46%), Gaps = 12/140 (8%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           R  AR  A+QAL+ ID+ G S    + +        + EL   +      + + R ++ G
Sbjct: 3   RRAARAKALQALFAIDVGGTSPDMALEQ-----VLEEGELPPRA------MTFTRELVEG 51

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
            M ++  ID +I       W   RL  +  +ILR  + E+      PV V+I+E + +A 
Sbjct: 52  TMAKRDAIDAIIRKYAV-GWRLERLAAVDRNILRMALYEMQYHRETPVRVVINEAIELAK 110

Query: 136 DFFYGDEPKFINAVLDKVSR 155
           +F   +  +F+N +LD   +
Sbjct: 111 NFNNEEAGRFVNGLLDNARK 130


>gi|282866212|ref|ZP_06275259.1| NusB antitermination factor [Streptomyces sp. ACTE]
 gi|282558996|gb|EFB64551.1| NusB antitermination factor [Streptomyces sp. ACTE]
          Length = 143

 Score = 57.0 bits (136), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 39/135 (28%), Positives = 60/135 (44%), Gaps = 9/135 (6%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           R  AR  A Q L++ D  G S   +++++       D +  V    +         ++ G
Sbjct: 4   RNKARKRAFQILFEADQRGESVQTVLADWVRLSRTDDRQPPVGEFTME--------LVEG 55

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
                  ID LI +   + W   R+ ++  SILR G  ELI   S P  V+I E V +A 
Sbjct: 56  YAQYADRIDDLIVTYAVD-WEIDRMPVVDRSILRLGAYELIWMDSTPDAVVIDEAVQLAK 114

Query: 136 DFFYGDEPKFINAVL 150
           +F   D P F+N +L
Sbjct: 115 EFSTDDSPSFVNGLL 129


>gi|157374416|ref|YP_001473016.1| transcription antitermination protein NusB [Shewanella sediminis
           HAW-EB3]
 gi|189035907|sp|A8FSR5|NUSB_SHESH RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|157316790|gb|ABV35888.1| NusB antitermination factor [Shewanella sediminis HAW-EB3]
          Length = 134

 Score = 57.0 bits (136), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 45/148 (30%), Positives = 74/148 (50%), Gaps = 15/148 (10%)

Query: 10  LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF 69
           +K S RR   RLA VQA+Y   + G +  ++  E+E   F  + ++D       +D+ +F
Sbjct: 1   MKPSERRKARRLA-VQAIYSWQLSGNNIADV--EHE---FLTEQKID------GIDVAYF 48

Query: 70  RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISE 129
           R ++ G   ++  ID  I   +     ++ +  I  ++LR    EL     VP +V I+E
Sbjct: 49  RELLSGTATKQAQIDEQIIPHIER--PYNEVSPIEKAVLRLATYELTFRKDVPYKVAINE 106

Query: 130 YVCIAHDFFYGDEPKFINAVLDK-VSRK 156
            + +A  F   D  KF+N +LDK V RK
Sbjct: 107 AIELAKAFGAEDGHKFVNGILDKIVGRK 134


>gi|58584450|ref|YP_198023.1| transcription termination factor, NusB [Wolbachia endosymbiont
           strain TRS of Brugia malayi]
 gi|58418766|gb|AAW70781.1| Transcription termination factor, NusB [Wolbachia endosymbiont
           strain TRS of Brugia malayi]
          Length = 160

 Score = 57.0 bits (136), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 44/151 (29%), Positives = 67/151 (44%), Gaps = 7/151 (4%)

Query: 15  RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74
           +R  AR  AVQ  Y    +G   +    E    R       D+       D ++   +++
Sbjct: 13  KRSAARFLAVQVAYSNIFMGYDKSTFELENCGLRNYVGKLADIFECE-EFDYQFLEKLLY 71

Query: 75  GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134
            V+      D +I   L   WS  RL+++  SILR  V EL  C + P  V+I+EY  IA
Sbjct: 72  KVIRSGGEYDKIIEYYLHPSWSLLRLNLVSLSILRVAVCELANCDT-PAPVVINEYTNIA 130

Query: 135 HDFFYGDEPK---FINAVLDKVSRKEEIKRS 162
            D    D+P    FIN +LDK     ++ ++
Sbjct: 131 SDLL--DKPSEIGFINGLLDKAKSAVKLNKN 159


>gi|85711195|ref|ZP_01042255.1| Transcription termination factor NusB [Idiomarina baltica OS145]
 gi|85695108|gb|EAQ33046.1| Transcription termination factor NusB [Idiomarina baltica OS145]
          Length = 139

 Score = 57.0 bits (136), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 44/144 (30%), Positives = 70/144 (48%), Gaps = 14/144 (9%)

Query: 10  LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF 69
           +K + RR  AR  AVQA+Y   +   +  EI ++     F  D +         VD+++F
Sbjct: 1   MKPAARRK-ARKLAVQAVYSWQLSQNTFNEIEAQ-----FLTDNDTS------KVDVDYF 48

Query: 70  RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISE 129
             ++ GV    + +D  I+  L      S LD +  ++LR    EL E + VP +V I+E
Sbjct: 49  LELLRGVGAFYKSLDEAIAPYLDR--PISELDPVELAVLRIAAYELRERYDVPYKVAINE 106

Query: 130 YVCIAHDFFYGDEPKFINAVLDKV 153
            + +A  F   D  +F+N VLDK 
Sbjct: 107 AIELAKSFGADDSHRFVNGVLDKA 130


>gi|237785587|ref|YP_002906292.1| N utilization substance protein B [Corynebacterium kroppenstedtii
           DSM 44385]
 gi|237758499|gb|ACR17749.1| N utilization substance protein B [Corynebacterium kroppenstedtii
           DSM 44385]
          Length = 192

 Score = 57.0 bits (136), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 33/107 (30%), Positives = 57/107 (53%), Gaps = 3/107 (2%)

Query: 56  DVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLEL 115
           D ES  L V  ++   I+ GV +    ID  I+S L+  W   R+  +  +++R    EL
Sbjct: 83  DSESGVLPVS-DYTATIVSGVAENLDGIDSAIASHLSSTWRLDRIPAVDRAVMRVSTWEL 141

Query: 116 IECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRS 162
           +    VP +V +SE + +A ++     P ++NAVLD ++   E++RS
Sbjct: 142 LHNEEVPPKVAVSEGIELASEYSTDVAPAYVNAVLDDIA--GEVQRS 186


>gi|224534018|ref|ZP_03674602.1| transcription antitermination factor NusB [Borrelia burgdorferi
           CA-11.2a]
 gi|224512854|gb|EEF83221.1| transcription antitermination factor NusB [Borrelia burgdorferi
           CA-11.2a]
          Length = 145

 Score = 56.6 bits (135), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 41/140 (29%), Positives = 67/140 (47%), Gaps = 9/140 (6%)

Query: 20  RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79
           R+ A Q +Y IDI   +  +I   +       D +LD+E+  +     ++  ++ G  + 
Sbjct: 8   RVLAFQKIYSIDINQSAMDDIFDIFN----IEDKDLDIENESIK---SFYSSLVIGTFNN 60

Query: 80  KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLEL-IECHSVPVEVIISEYVCIAHDFF 138
            +HID LI   ++  WS  R+D +  +ILR GV  L  E        II E + IA  + 
Sbjct: 61  LEHIDSLIRD-ISLNWSLERMDKVDLAILRMGVYSLKFENFENSKRAIIDEAILIAKKYG 119

Query: 139 YGDEPKFINAVLDKVSRKEE 158
             +  KFIN +LD + +  E
Sbjct: 120 SKNSYKFINGILDALLKNME 139


>gi|88801237|ref|ZP_01116776.1| transcription antitermination protein NusB [Reinekea sp. MED297]
 gi|88776023|gb|EAR07259.1| transcription antitermination protein NusB [Reinekea sp. MED297]
          Length = 151

 Score = 56.6 bits (135), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 44/144 (30%), Positives = 69/144 (47%), Gaps = 21/144 (14%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           R  AR  A+QALYQ  +   S T+I +E     F  D ++         D ++F  ++ G
Sbjct: 11  RRKARRLAMQALYQWHVADQSVTQIEAE-----FLTDNDVS------KFDKDYFSEVLRG 59

Query: 76  VMDRKQ----HIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
           V   K     H+D  I   L +      L  +  +ILR G  E +    VP +VII+E V
Sbjct: 60  VAASKSELDSHVDKHIDRALKD------LTPVELAILRMGAYEFLHRIDVPYKVIINEGV 113

Query: 132 CIAHDFFYGDEPKFINAVLDKVSR 155
            ++  F   +  +F+N VLDK+++
Sbjct: 114 ELSKTFGANEAHRFVNGVLDKLAQ 137


>gi|328954274|ref|YP_004371608.1| NusB antitermination factor [Desulfobacca acetoxidans DSM 11109]
 gi|328454598|gb|AEB10427.1| NusB antitermination factor [Desulfobacca acetoxidans DSM 11109]
          Length = 142

 Score = 56.6 bits (135), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 39/147 (26%), Positives = 69/147 (46%), Gaps = 12/147 (8%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           + +AR  A+Q LYQI+I G       + +  + F ++   +  S Y H        ++ G
Sbjct: 6   KSLARERALQCLYQIEITGREVEGAAALFWEH-FHSE---ERNSAYFHR-------LVAG 54

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
           V    + +D  IS   ++ W   R+  +  +ILR  + EL+ C  VP +V+++E V +  
Sbjct: 55  VRGHCEELDAYISR-FSQHWRLERMASVDRNILRLAIFELLHCPEVPPKVVVNEAVELGK 113

Query: 136 DFFYGDEPKFINAVLDKVSRKEEIKRS 162
            F   +   FIN +LD   +  +  R 
Sbjct: 114 RFGAENSGAFINGILDSFLKARQPDRG 140


>gi|319762696|ref|YP_004126633.1| transcription antitermination factor nusb [Alicycliphilus
           denitrificans BC]
 gi|317117257|gb|ADU99745.1| transcription antitermination factor NusB [Alicycliphilus
           denitrificans BC]
          Length = 181

 Score = 56.6 bits (135), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 41/141 (29%), Positives = 69/141 (48%), Gaps = 13/141 (9%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           R  AR  A+QALYQ  + G   T I        F  D      S +   D   +  ++HG
Sbjct: 38  RSRAREFALQALYQHLVGGNDATAID------LFTRDL-----SGFHKADAAHYDALLHG 86

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
            ++ +QH+D LI+  L  K   + +  I  +++  GV E   C  VP  V+I+E + +A 
Sbjct: 87  CIETEQHMDALIAPLLDRK--MAEISPIEHAVMWIGVYEFQHCPDVPWRVVINECIELAK 144

Query: 136 DFFYGDEPKFINAVLDKVSRK 156
           +F   D  K++N +L+ ++ +
Sbjct: 145 EFGGTDGHKYVNGILNGLAPQ 165


>gi|253699860|ref|YP_003021049.1| NusB antitermination factor [Geobacter sp. M21]
 gi|259514841|sp|C6E3M6|NUSB_GEOSM RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|251774710|gb|ACT17291.1| NusB antitermination factor [Geobacter sp. M21]
          Length = 145

 Score = 56.6 bits (135), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 42/145 (28%), Positives = 73/145 (50%), Gaps = 12/145 (8%)

Query: 13  SHRRGIARLAAVQALYQIDII---GCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF 69
           + R G  R  A+QALY  D++     ST + I+E  ++    +  L V S       E  
Sbjct: 3   TRREG--RELALQALYSKDLVLQDANSTLKRITE--SFSEGEEPTLSVNSKAYAFASE-- 56

Query: 70  RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISE 129
             +++GV+   Q ID  I+   ++ WS +R+  +  +ILR  V EL+    +P  V ++E
Sbjct: 57  --LVNGVVSNLQQIDSRIAEK-SKHWSMARMARVDLNILRLAVFELLYRPDIPKNVTMNE 113

Query: 130 YVCIAHDFFYGDEPKFINAVLDKVS 154
            + +A  F   D   F+N +LD+++
Sbjct: 114 AIEVAKKFGADDSASFVNGILDEIA 138


>gi|218249233|ref|YP_002374635.1| transcription antitermination factor NusB [Borrelia burgdorferi
           ZS7]
 gi|226321982|ref|ZP_03797507.1| transcription antitermination factor NusB [Borrelia burgdorferi
           Bol26]
 gi|218164421|gb|ACK74482.1| transcription antitermination factor NusB [Borrelia burgdorferi
           ZS7]
 gi|226232572|gb|EEH31326.1| transcription antitermination factor NusB [Borrelia burgdorferi
           Bol26]
 gi|312148021|gb|ADQ30680.1| transcription antitermination factor NusB [Borrelia burgdorferi
           JD1]
          Length = 142

 Score = 56.6 bits (135), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 41/140 (29%), Positives = 67/140 (47%), Gaps = 9/140 (6%)

Query: 20  RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79
           R+ A Q +Y IDI   +  +I   +       D +LD+E+  +     ++  ++ G  + 
Sbjct: 5   RVLAFQKIYSIDINQSAMDDIFDIFN----IEDKDLDIENESIK---SFYSSLVIGTFNN 57

Query: 80  KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLEL-IECHSVPVEVIISEYVCIAHDFF 138
            +HID LI   ++  WS  R+D +  +ILR GV  L  E        II E + IA  + 
Sbjct: 58  LEHIDSLIRD-ISLNWSLERMDKVDLAILRMGVYSLKFENFENSKRAIIDEAILIAKKYG 116

Query: 139 YGDEPKFINAVLDKVSRKEE 158
             +  KFIN +LD + +  E
Sbjct: 117 SKNSYKFINGILDALLKNME 136


>gi|15602595|ref|NP_245667.1| transcription antitermination protein NusB [Pasteurella multocida
           subsp. multocida str. Pm70]
 gi|13431742|sp|P57868|NUSB_PASMU RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|12721025|gb|AAK02814.1| NusB [Pasteurella multocida subsp. multocida str. Pm70]
          Length = 144

 Score = 56.6 bits (135), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 53/154 (34%), Positives = 75/154 (48%), Gaps = 16/154 (10%)

Query: 1   MTIQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESV 60
           MT Q ++K  K+S RR  AR  AVQALY   +   S  EI        F A+ +L     
Sbjct: 1   MTEQKHEK--KISPRRR-ARECAVQALYSWYVSQNSPAEI-----ELNFMAEQDLK---- 48

Query: 61  YLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHS 120
              VD  +FR +     +    +D ++   L  +   S LD I  +ILR  V EL     
Sbjct: 49  --GVDTAYFRRLFRQTAENVDAVDNIMIPYLDRE--VSELDPIEKAILRLAVYELKFELD 104

Query: 121 VPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVS 154
           VP +V+I+E + +A  F   D  K++N VLDKV+
Sbjct: 105 VPYKVVINEAIEVAKVFGAEDSHKYVNGVLDKVA 138


>gi|281491193|ref|YP_003353173.1| transcription antitermination factor [Lactococcus lactis subsp.
           lactis KF147]
 gi|281374934|gb|ADA64452.1| Transcription antitermination factor [Lactococcus lactis subsp.
           lactis KF147]
          Length = 323

 Score = 56.6 bits (135), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 29/84 (34%), Positives = 50/84 (59%), Gaps = 1/84 (1%)

Query: 67  EWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVI 126
           E+F  ++ GV+D+K+ ++  IS  L + WSFSRL ++  +IL+    E++   + P  V 
Sbjct: 236 EYFTQLVDGVLDKKEDLEANISKYLAKTWSFSRLTLVEQAILQVSSYEILYTET-PDVVA 294

Query: 127 ISEYVCIAHDFFYGDEPKFINAVL 150
           ++E V ++ DF      +FIN VL
Sbjct: 295 VNEAVELSKDFSDEKSSRFINGVL 318


>gi|260913902|ref|ZP_05920376.1| transcription termination/antitermination factor NusB [Pasteurella
           dagmatis ATCC 43325]
 gi|260631989|gb|EEX50166.1| transcription termination/antitermination factor NusB [Pasteurella
           dagmatis ATCC 43325]
          Length = 144

 Score = 56.6 bits (135), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 47/144 (32%), Positives = 73/144 (50%), Gaps = 14/144 (9%)

Query: 11  KLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFR 70
           K+S RR  AR  AVQALY   +   S  EI  E     F A+ +L        VD+ +FR
Sbjct: 9   KVSPRRR-ARECAVQALYSWYVSQNSPAEIELE-----FVAEQDLK------GVDVPYFR 56

Query: 71  VIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEY 130
            +    ++  + +D++++  L      + +D I  +ILR  V EL     VP +V+I+E 
Sbjct: 57  KLFRQTVENVETVDVIMAPYLDR--DVNEVDPIEKAILRLAVYELKFELDVPYKVVINEA 114

Query: 131 VCIAHDFFYGDEPKFINAVLDKVS 154
           + +   F   D  K++N VLDKV+
Sbjct: 115 IEVTKVFGADDSHKYVNGVLDKVA 138


>gi|332184492|gb|AEE26746.1| Transcription termination protein NusB [Francisella cf. novicida
           3523]
          Length = 141

 Score = 56.6 bits (135), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 45/147 (30%), Positives = 70/147 (47%), Gaps = 13/147 (8%)

Query: 10  LKLSHR-RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEW 68
           +K + R R  ARL  VQALYQ  +   +  E+  +Y  Y   AD          + D + 
Sbjct: 1   MKTTARARNNARLYTVQALYQKRVADNTFAELKVQY--YADNADRH--------YTDWDL 50

Query: 69  FRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIIS 128
           F  +I  V   +  ID  I          + ++ +  ++L+A + ELIEC   P +VII 
Sbjct: 51  FYRLIDAVKSNQDIIDKYIQE--NSNNGVASINYVDYAVLQAAIAELIECLENPYQVIIK 108

Query: 129 EYVCIAHDFFYGDEPKFINAVLDKVSR 155
           EYV I +     +  KF+NAVL  +++
Sbjct: 109 EYVEICYSMGTEEGYKFVNAVLQNLAK 135


>gi|198282617|ref|YP_002218938.1| NusB antitermination factor [Acidithiobacillus ferrooxidans ATCC
           53993]
 gi|218667110|ref|YP_002424808.1| transcription antitermination factor NusB [Acidithiobacillus
           ferrooxidans ATCC 23270]
 gi|198247138|gb|ACH82731.1| NusB antitermination factor [Acidithiobacillus ferrooxidans ATCC
           53993]
 gi|218519323|gb|ACK79909.1| transcription antitermination factor NusB [Acidithiobacillus
           ferrooxidans ATCC 23270]
          Length = 147

 Score = 56.6 bits (135), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 44/147 (29%), Positives = 72/147 (48%), Gaps = 11/147 (7%)

Query: 10  LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF 69
           +K+S RR +AR AAVQALYQ  +      EI       +F +D E          D+ +F
Sbjct: 1   MKISRRR-LARQAAVQALYQWQMNPGHCAEI-----ELQFTSDPER-----LQGADVAFF 49

Query: 70  RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISE 129
           + +  GV      +D  I+  + ++     +  +  +ILR    EL +    P  VII+E
Sbjct: 50  KSLWQGVCAAISELDPAIAEEVQDRRWADEVSEVERAILRLAACELRDYPQTPYRVIINE 109

Query: 130 YVCIAHDFFYGDEPKFINAVLDKVSRK 156
            + +  DF      +F+NAVLDK++++
Sbjct: 110 AIELDKDFGGEQGHRFVNAVLDKLAQR 136


>gi|291616524|ref|YP_003519266.1| NusB [Pantoea ananatis LMG 20103]
 gi|291151554|gb|ADD76138.1| NusB [Pantoea ananatis LMG 20103]
          Length = 139

 Score = 56.6 bits (135), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 43/139 (30%), Positives = 68/139 (48%), Gaps = 13/139 (9%)

Query: 23  AVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQH 82
           AVQALY   +      ++      Y+F A  E DV+ V    D+ +FR ++ GV     +
Sbjct: 13  AVQALYSWQLSNNDIADV-----EYQFLA--EQDVKDV----DITYFRELLSGVATNSAY 61

Query: 83  IDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDE 142
           +D L+   L+ +     L  +  +ILR  + EL +   VP +V I+E + +A  F   D 
Sbjct: 62  LDGLMKPYLSRQ--LEELGQVEKAILRVSLYELSKRSDVPYKVAINEGIELAKVFGAEDS 119

Query: 143 PKFINAVLDKVSRKEEIKR 161
            KF+N VLDK   +   +R
Sbjct: 120 HKFVNGVLDKAGPQIRPQR 138


>gi|52425030|ref|YP_088167.1| transcription antitermination protein NusB [Mannheimia
           succiniciproducens MBEL55E]
 gi|81609560|sp|Q65TX8|NUSB_MANSM RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|52307082|gb|AAU37582.1| NusB protein [Mannheimia succiniciproducens MBEL55E]
          Length = 143

 Score = 56.6 bits (135), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 52/156 (33%), Positives = 74/156 (47%), Gaps = 21/156 (13%)

Query: 1   MTIQDNKKDLKLSHRRGIARLAAVQALY--QIDIIGCSTTEIISEYETYRFCADTELDVE 58
           MT Q  K+    S RR  AR  AVQALY  QI      T E+        F  D ++   
Sbjct: 1   MTEQVKKRP---SPRRR-ARECAVQALYSFQISQNPVETVEL-------SFVTDQDMK-- 47

Query: 59  SVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIEC 118
                VD+ +FR +    ++    +D  ++  L    S + LD I  +ILR  V EL   
Sbjct: 48  ----GVDMPYFRKLFRQTVENIPSVDSTMAPYLDR--SANELDPIEKAILRLAVYELKYE 101

Query: 119 HSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVS 154
             VP +V+I+E + +A  F   D  K+IN VLDK++
Sbjct: 102 LDVPYKVVINEAIEVAKTFGAEDSHKYINGVLDKIA 137


>gi|114319541|ref|YP_741224.1| NusB antitermination factor [Alkalilimnicola ehrlichii MLHE-1]
 gi|119372274|sp|Q0ABQ3|NUSB_ALHEH RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|114225935|gb|ABI55734.1| NusB antitermination factor [Alkalilimnicola ehrlichii MLHE-1]
          Length = 178

 Score = 56.6 bits (135), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 34/97 (35%), Positives = 49/97 (50%), Gaps = 4/97 (4%)

Query: 61  YLH--VDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIEC 118
           Y H  +D  +FR ++HGV  R   +D  +   L        LD +  ++LR G  EL E 
Sbjct: 66  YPHDGLDRPYFRALLHGVPARLNDLDQALEPLLDR--PLRTLDPLEKALLRLGAWELSER 123

Query: 119 HSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSR 155
              P  VII+E V +A  F      ++IN VLDK++R
Sbjct: 124 MDTPWRVIINEAVNLAKRFGAEQSHRYINGVLDKLAR 160


>gi|254522951|ref|ZP_05135006.1| transcription antitermination factor NusB [Stenotrophomonas sp.
           SKA14]
 gi|219720542|gb|EED39067.1| transcription antitermination factor NusB [Stenotrophomonas sp.
           SKA14]
          Length = 159

 Score = 56.6 bits (135), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 40/139 (28%), Positives = 64/139 (46%), Gaps = 13/139 (9%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           R  AR  AVQALY   I G +   +I++     F  +   ++       DL +F  ++HG
Sbjct: 24  RSRARRRAVQALYAWQISGGNAQSLIAQ-----FAHEQAREI------ADLAYFEALVHG 72

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
           V+D ++ ID  +   L        +D I  ++LR    EL     VP  V+I+E +  A 
Sbjct: 73  VLDNRRDIDEALGPYLDR--GIEEVDAIERAVLRLAGYELRYRLDVPYRVVINEAIESAK 130

Query: 136 DFFYGDEPKFINAVLDKVS 154
            F       ++N VLD+ +
Sbjct: 131 RFGSEHGHTYVNGVLDRAA 149


>gi|307718673|ref|YP_003874205.1| N-utilization substance protein B [Spirochaeta thermophila DSM
           6192]
 gi|306532398|gb|ADN01932.1| N-utilization substance protein B [Spirochaeta thermophila DSM
           6192]
 gi|315185797|gb|EFU19563.1| NusB antitermination factor [Spirochaeta thermophila DSM 6578]
          Length = 136

 Score = 56.6 bits (135), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 45/137 (32%), Positives = 62/137 (45%), Gaps = 12/137 (8%)

Query: 19  ARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMD 78
           AR+ A QAL+  D  G    E+ S        AD E+  E V     L     ++ G ++
Sbjct: 7   ARILAFQALFASDGGGGDGLEVFSFP-----WADGEIP-EEVRTFAQL-----LLRGTLE 55

Query: 79  RKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFF 138
               +D LI   L E W F R+     +ILR  V  L+    +P  VII E V IA  F 
Sbjct: 56  HLPEVDDLIKKHL-EHWDFGRIARTDRAILRMSVYALLYQKEIPARVIIDEAVEIAKQFG 114

Query: 139 YGDEPKFINAVLDKVSR 155
             D  +F+N VLD + +
Sbjct: 115 TQDSYRFVNGVLDAIRK 131


>gi|295677368|ref|YP_003605892.1| NusB antitermination factor [Burkholderia sp. CCGE1002]
 gi|295437211|gb|ADG16381.1| NusB antitermination factor [Burkholderia sp. CCGE1002]
          Length = 144

 Score = 56.6 bits (135), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 43/145 (29%), Positives = 63/145 (43%), Gaps = 15/145 (10%)

Query: 10  LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF 69
           +K + RR  +R  A Q LYQ  + G    EI           D +L     Y   D E  
Sbjct: 1   MKSARRR--SRELATQGLYQWLLSGSPGGEI-----------DAQLRGAQGYDKADHEHL 47

Query: 70  RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISE 129
             I+HGVM   + +   I+ CL       +L  +  ++L     EL     +P  V+I+E
Sbjct: 48  DAILHGVMRDSEELSAAIAPCLDR--PIDQLSPVERAVLLVAAFELKNHVDIPYRVVINE 105

Query: 130 YVCIAHDFFYGDEPKFINAVLDKVS 154
            V +   F   D  K++N VLDK+S
Sbjct: 106 AVELTKTFGGSDGYKYVNGVLDKLS 130


>gi|225174889|ref|ZP_03728886.1| NusB antitermination factor [Dethiobacter alkaliphilus AHT 1]
 gi|225169529|gb|EEG78326.1| NusB antitermination factor [Dethiobacter alkaliphilus AHT 1]
          Length = 138

 Score = 56.6 bits (135), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 40/145 (27%), Positives = 68/145 (46%), Gaps = 12/145 (8%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           R +AR  A + L+Q DI        IS+           L  E+      +E+ R ++ G
Sbjct: 3   RRLAREIAFKTLFQYDIGKNEVEPTISQ-----------LIEENGLEGAGVEFSRQLVLG 51

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
            +   + ID  ++  L +KW   RL  +  ++LR    E++    +P  V I+E + ++ 
Sbjct: 52  TLKNLEAIDKALAGYL-QKWELGRLAAVDRNVLRLAAFEILYREDIPAAVTINEALELSK 110

Query: 136 DFFYGDEPKFINAVLDKVSRKEEIK 160
            F   +  KF+N VLDK++R  E K
Sbjct: 111 AFHSEEAAKFLNGVLDKLARHHEGK 135


>gi|72161498|ref|YP_289155.1| transcription antitermination protein NusB [Thermobifida fusca YX]
 gi|119390842|sp|Q47QY5|NUSB_THEFY RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|71915230|gb|AAZ55132.1| NusB antitermination factor [Thermobifida fusca YX]
          Length = 142

 Score = 56.6 bits (135), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 42/148 (28%), Positives = 72/148 (48%), Gaps = 17/148 (11%)

Query: 13  SHRRGI---ARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF 69
           S RRG    AR+ AV+ LY+ ++ G   +E+I      R  A TE  +         E+ 
Sbjct: 4   SRRRGSRHKARVRAVEILYEAEVRGVPVSEVIE-----RRRAQTEPPIN--------EFT 50

Query: 70  RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISE 129
             +   V + +  ID L+ +     W+  R+ ++  +ILR GV EL+    +P  V I+E
Sbjct: 51  EQLATRVDEHRARIDELLETYAI-GWTLDRMPVVDRNILRIGVYELLWADDIPDGVAIAE 109

Query: 130 YVCIAHDFFYGDEPKFINAVLDKVSRKE 157
            V +A +    + P F+N +L ++  K+
Sbjct: 110 AVAMAKELSTDESPVFVNGLLSRLMEKK 137


>gi|78187533|ref|YP_375576.1| NusB antitermination factor [Chlorobium luteolum DSM 273]
 gi|119390794|sp|Q3B298|NUSB_PELLD RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|78167435|gb|ABB24533.1| NusB antitermination factor [Chlorobium luteolum DSM 273]
          Length = 163

 Score = 56.6 bits (135), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 32/101 (31%), Positives = 58/101 (57%), Gaps = 4/101 (3%)

Query: 66  LEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEV 125
           +++F +++  + D ++ ID  I++  T  W  SR+ +I  +ILR  + EL+ C  +P +V
Sbjct: 45  MKFFNLLLKSIKDNREEIDRYIAAH-TFNWDMSRIAIIDKNILRMALAELLYCEDIPPKV 103

Query: 126 IISEYVCIAHDFFYGDE-PKFINAVLDKVSRKEEIKRSGCV 165
            I+E + IA  F   D+  KF+N +LD +    E+K  G +
Sbjct: 104 SINEAIEIAKKFNSTDKSSKFVNGILDAIFN--ELKTEGKI 142


>gi|225869862|ref|YP_002745809.1| N utilization substance protein B homolog (NusB protein)
           [Streptococcus equi subsp. equi 4047]
 gi|254772656|sp|C0MBK2|NUSB_STRE4 RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|225699266|emb|CAW92587.1| N utilization substance protein B homolog (NusB protein)
           [Streptococcus equi subsp. equi 4047]
          Length = 150

 Score = 56.6 bits (135), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 39/139 (28%), Positives = 63/139 (45%), Gaps = 6/139 (4%)

Query: 12  LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71
             H R   R  A QAL+ +++ G         Y+  +  AD +   E     ++L     
Sbjct: 5   FQHSRRDLRERAFQALFAMEMGGDFLPASQFAYDYDKEAADDKQPSELPVFLLNL----- 59

Query: 72  IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
            ++GVMD K  +D +I   L   WS  RL ++  ++LR G+ E+      P  V ++E +
Sbjct: 60  -VNGVMDHKAELDEVIKKNLKTSWSIERLTVVDKTMLRLGLFEMTLFEETPDRVALNEII 118

Query: 132 CIAHDFFYGDEPKFINAVL 150
            IA  +      KFIN +L
Sbjct: 119 EIAKKYSDDTSAKFINGLL 137


>gi|229019401|ref|ZP_04176224.1| N utilization substance protein B [Bacillus cereus AH1273]
 gi|229025645|ref|ZP_04182051.1| N utilization substance protein B [Bacillus cereus AH1272]
 gi|229098654|ref|ZP_04229594.1| N utilization substance protein B [Bacillus cereus Rock3-29]
 gi|229104810|ref|ZP_04235471.1| N utilization substance protein B [Bacillus cereus Rock3-28]
 gi|229117679|ref|ZP_04247049.1| N utilization substance protein B [Bacillus cereus Rock1-3]
 gi|228665771|gb|EEL21243.1| N utilization substance protein B [Bacillus cereus Rock1-3]
 gi|228678683|gb|EEL32899.1| N utilization substance protein B [Bacillus cereus Rock3-28]
 gi|228684733|gb|EEL38671.1| N utilization substance protein B [Bacillus cereus Rock3-29]
 gi|228735643|gb|EEL86232.1| N utilization substance protein B [Bacillus cereus AH1272]
 gi|228741871|gb|EEL92048.1| N utilization substance protein B [Bacillus cereus AH1273]
          Length = 120

 Score = 56.6 bits (135), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 44/132 (33%), Positives = 63/132 (47%), Gaps = 18/132 (13%)

Query: 24  VQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHI 83
           +QALYQ+DI G        E E      +T  + E        E+   ++ G +D K+ I
Sbjct: 1   MQALYQMDITG--------ELEPKVAVENTLDEGEETN-----EFLESLVVGFVDNKEEI 47

Query: 84  DLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEP 143
           D  I   L +KW   R+ ++  SILR  V E+     +P  V I+E + IA  F  GDE 
Sbjct: 48  DAAIRQNL-KKWKLERISIVDRSILRVAVYEMKYMEEIPHNVTINEAIEIAKTF--GDEE 104

Query: 144 --KFINAVLDKV 153
             +FIN VL  +
Sbjct: 105 SRRFINGVLSNI 116


>gi|224531581|ref|ZP_03672213.1| transcription antitermination factor NusB [Borrelia valaisiana
           VS116]
 gi|224511046|gb|EEF81452.1| transcription antitermination factor NusB [Borrelia valaisiana
           VS116]
          Length = 145

 Score = 56.2 bits (134), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 39/140 (27%), Positives = 67/140 (47%), Gaps = 9/140 (6%)

Query: 20  RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79
           R+ A Q +Y IDI   +  +I   +       D  LD+E+  +     ++  +++G  + 
Sbjct: 8   RVLAFQKIYSIDINQSAMDDIFDIFN----IEDKGLDIENESIK---SFYSSLVNGTFNN 60

Query: 80  KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLEL-IECHSVPVEVIISEYVCIAHDFF 138
            +HID LI   ++  WS  R+D +  +ILR GV  L  +        +I E + IA  + 
Sbjct: 61  LEHIDNLIRD-ISLNWSLDRMDKVDLAILRMGVYSLKFQNFENSKRAVIDEAILIAKKYG 119

Query: 139 YGDEPKFINAVLDKVSRKEE 158
             +  KFIN +LD + +  E
Sbjct: 120 SKNSYKFINGILDALLKNME 139


>gi|225869187|ref|YP_002745135.1| N utilization substance protein B homolog (NusB protein)
           [Streptococcus equi subsp. zooepidemicus]
 gi|259514901|sp|C0MED0|NUSB_STRS7 RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|225702463|emb|CAX00364.1| N utilization substance protein B homolog (NusB protein)
           [Streptococcus equi subsp. zooepidemicus]
          Length = 150

 Score = 56.2 bits (134), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 38/140 (27%), Positives = 66/140 (47%), Gaps = 6/140 (4%)

Query: 11  KLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFR 70
           +  H R   R  A QAL+ +++ G     +++    Y +  +   D +   L V   +  
Sbjct: 4   RFQHSRRDLRERAFQALFTMEMGGDF---LLASQFAYDYDKEVADDKQPSELPV---FLL 57

Query: 71  VIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEY 130
            +++GVMD K  +D +I   L   WS  RL ++  ++LR G+ E+      P  V ++E 
Sbjct: 58  NLVNGVMDHKAELDEVIKKNLKAGWSIERLTVVDKTMLRLGLFEMTLFEETPDRVALNEI 117

Query: 131 VCIAHDFFYGDEPKFINAVL 150
           + IA  +      KFIN +L
Sbjct: 118 IEIAKKYSDDTSAKFINGLL 137


>gi|28211246|ref|NP_782190.1| transcription antitermination protein NusB [Clostridium tetani E88]
 gi|32171611|sp|Q894G5|NUSB_CLOTE RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|28203686|gb|AAO36127.1| N utilization substance protein B [Clostridium tetani E88]
          Length = 153

 Score = 56.2 bits (134), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 49/154 (31%), Positives = 79/154 (51%), Gaps = 15/154 (9%)

Query: 15  RRGIARLAAVQALYQIDIIGCSTTEII-------SEYETYR--FCADTELDVESVYL-HV 64
           +R  +R   +Q L+++ I   +  EII       +E E          E+D E + L  V
Sbjct: 2   KRKKSREMTMQLLFEMMIKKENYVEIINTLKEALTEEEDINSILGEKKEMDEERIDLDEV 61

Query: 65  DLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVE 124
           DLE+    + GV +  + +D  I   L + W+ +RL  +  +ILR    E++  + VP  
Sbjct: 62  DLEYLIHTLKGVEENSKVLDEHIEKYL-KNWTLNRLAKVDLAILRLCSYEILFSNEVPDN 120

Query: 125 VIISEYVCIAHDFFYGDE--PKFINAVLDKVSRK 156
           V I+E V +A    YGD+  P FINAVLDK++++
Sbjct: 121 VAINEGVELAKK--YGDDKSPAFINAVLDKIAKQ 152


>gi|224373796|ref|YP_002608168.1| transcription antitermination factor NusB [Nautilia profundicola
           AmH]
 gi|223589865|gb|ACM93601.1| transcription antitermination factor NusB [Nautilia profundicola
           AmH]
          Length = 136

 Score = 56.2 bits (134), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 30/91 (32%), Positives = 53/91 (58%), Gaps = 2/91 (2%)

Query: 67  EWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVI 126
           E+ + ++ GV +    ID +I + L + W F RLD +   ILR G+ E++   + P +++
Sbjct: 44  EFAKKLLKGVSEHIDKIDEIIKNHLID-WDFERLDKVDKQILRVGIYEILYTDT-PYQIV 101

Query: 127 ISEYVCIAHDFFYGDEPKFINAVLDKVSRKE 157
           I E V IA +F       FIN +LD+V++++
Sbjct: 102 IDEAVKIAKNFSEDKAKSFINGILDRVAKEK 132


>gi|300934532|ref|ZP_07149788.1| transcription antitermination protein NusB [Corynebacterium
           resistens DSM 45100]
          Length = 204

 Score = 56.2 bits (134), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 29/89 (32%), Positives = 45/89 (50%)

Query: 67  EWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVI 126
           E+   I+ G       ID  IS  L  +W   RL  +  ++LR    EL+    VP +V 
Sbjct: 58  EYTATIVEGTATNLDAIDDAISMNLASEWRLDRLPAVDRAVLRVAAWELLFNDEVPNQVA 117

Query: 127 ISEYVCIAHDFFYGDEPKFINAVLDKVSR 155
           ++E + +A  + +   P ++NAVLD VSR
Sbjct: 118 MTEGIELAAQYSHDKAPAYVNAVLDGVSR 146


>gi|242278127|ref|YP_002990256.1| NusB antitermination factor [Desulfovibrio salexigens DSM 2638]
 gi|242121021|gb|ACS78717.1| NusB antitermination factor [Desulfovibrio salexigens DSM 2638]
          Length = 155

 Score = 56.2 bits (134), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 41/152 (26%), Positives = 78/152 (51%), Gaps = 16/152 (10%)

Query: 10  LKLSHRRGI---ARLAAVQALYQIDII---GCSTTEIISEYETYRFCADTELDVESVYLH 63
           +++S  +G+    R+ A Q LY +  +   G  TTE I   ++     +TE D+      
Sbjct: 1   MQMSQTKGLRRKGRVLAFQVLYGLSFVPPHGGWTTERIYN-QSPAVIRETEEDL------ 53

Query: 64  VDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPV 123
             + + R ++ G+ + ++ +D +I    ++ W   R+  +  +ILR  V EL+    +P+
Sbjct: 54  --ILFARELLIGIWNAQEELDEVIGRY-SKHWKIERIAKVELAILRLAVYELVHKPDIPL 110

Query: 124 EVIISEYVCIAHDFFYGDEPKFINAVLDKVSR 155
           +V I+E + +A  F  G+   FIN +LD V+R
Sbjct: 111 KVGINEGIELAKKFGDGNSRNFINGILDAVAR 142


>gi|154686696|ref|YP_001421857.1| transcription antitermination protein NusB [Bacillus
           amyloliquefaciens FZB42]
 gi|166215663|sp|A7Z6K0|NUSB_BACA2 RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|154352547|gb|ABS74626.1| NusB [Bacillus amyloliquefaciens FZB42]
          Length = 130

 Score = 56.2 bits (134), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 38/139 (27%), Positives = 65/139 (46%), Gaps = 16/139 (11%)

Query: 15  RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74
           +R  AR  A+QAL+QID+   +  + I             LD E         +F  +++
Sbjct: 2   KRRTAREKALQALFQIDVSDIAPNDAIEH----------ALDGEKTDA-----FFEQLVY 46

Query: 75  GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134
           GV++ +  +D +IS  L   W   R+  +  +ILR  V E++    +P  V ++E + +A
Sbjct: 47  GVIEHQVQLDEMISGHLV-NWKLDRIANVDRAILRLAVYEMVYSDDIPANVSLNEAIELA 105

Query: 135 HDFFYGDEPKFINAVLDKV 153
             F      KF+N VL  +
Sbjct: 106 KRFGDDKAAKFVNGVLSNI 124


>gi|227327507|ref|ZP_03831531.1| transcription antitermination protein NusB [Pectobacterium
           carotovorum subsp. carotovorum WPP14]
          Length = 139

 Score = 56.2 bits (134), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 41/132 (31%), Positives = 69/132 (52%), Gaps = 13/132 (9%)

Query: 23  AVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQH 82
           AVQALY   +      ++      ++F   +E DV+ V    D+ +FR ++ GV  + + 
Sbjct: 13  AVQALYSWQLSKNDIADV-----EHQFL--SEQDVKDV----DITYFRELLAGVATQAEK 61

Query: 83  IDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDE 142
           +D L++  L+ +     L  +  +ILR  + EL +   VP +V I+E + +A  F   D 
Sbjct: 62  LDQLMAPFLSRQ--IEELGQVEKAILRLAMFELSKREDVPYKVAINEAIELAKIFGAEDS 119

Query: 143 PKFINAVLDKVS 154
            KF+N VLDKV+
Sbjct: 120 HKFVNGVLDKVA 131


>gi|291542871|emb|CBL15981.1| transcription antitermination factor NusB [Ruminococcus bromii
           L2-63]
          Length = 164

 Score = 56.2 bits (134), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 29/89 (32%), Positives = 51/89 (57%), Gaps = 1/89 (1%)

Query: 68  WFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVII 127
           + + ++ G+ D+ + ID +I+S L + W+ SR+     +ILR  + E+    +VP  V I
Sbjct: 70  YAQAVVSGIEDKHEEIDEIIASHLKKGWTLSRISKPSLAILRLAIYEMKYLDNVPQSVSI 129

Query: 128 SEYVCIAHDFFYGDEPKFINAVLDKVSRK 156
           +E V +A  +   DE KF+N +L   SR+
Sbjct: 130 NEAVELAKKYTI-DESKFVNGILGTYSRE 157


>gi|259909279|ref|YP_002649635.1| transcription antitermination protein NusB [Erwinia pyrifoliae
           Ep1/96]
 gi|292487447|ref|YP_003530319.1| transcription antitermination protein NusB [Erwinia amylovora
           CFBP1430]
 gi|292898689|ref|YP_003538058.1| N utilization substance protein B [Erwinia amylovora ATCC 49946]
 gi|224964901|emb|CAX56424.1| N utilization substance protein B [Erwinia pyrifoliae Ep1/96]
 gi|283479334|emb|CAY75250.1| transcription antitermination protein NusB [Erwinia pyrifoliae DSM
           12163]
 gi|291198537|emb|CBJ45645.1| N utilization substance protein B [Erwinia amylovora ATCC 49946]
 gi|291552866|emb|CBA19911.1| transcription antitermination protein NusB [Erwinia amylovora
           CFBP1430]
 gi|310766819|gb|ADP11769.1| transcription antitermination protein NusB [Erwinia sp. Ejp617]
 gi|312171550|emb|CBX79808.1| transcription antitermination protein NusB [Erwinia amylovora ATCC
           BAA-2158]
          Length = 139

 Score = 56.2 bits (134), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 43/132 (32%), Positives = 66/132 (50%), Gaps = 13/132 (9%)

Query: 23  AVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQH 82
           AVQALY   I      ++      Y+F A  E DV+ V    D+ +FR ++ GV     +
Sbjct: 13  AVQALYSWQISKNDIADV-----EYQFLA--EQDVKDV----DITYFRELVGGVATHSAY 61

Query: 83  IDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDE 142
           +D L+   L+ +     L  +  +ILR  + EL +   VP +V I+E + +A  F   D 
Sbjct: 62  LDDLMKPFLSRQ--LEELGQVEKAILRISLFELSKRSDVPYKVAINEGIELAKVFGAEDS 119

Query: 143 PKFINAVLDKVS 154
            KF+N VLDK +
Sbjct: 120 HKFVNGVLDKAA 131


>gi|320011921|gb|ADW06771.1| NusB antitermination factor [Streptomyces flavogriseus ATCC 33331]
          Length = 143

 Score = 56.2 bits (134), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 41/147 (27%), Positives = 67/147 (45%), Gaps = 12/147 (8%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           R  AR  A Q L++ D  G S   +++++       D +  V    +         ++ G
Sbjct: 4   RNKARKRAFQILFEADQRGESVQTVLADWVRLSRTDDRQPPVGEFTME--------LVEG 55

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
                  ID LI +   + W   R+ ++  SILR G  EL+   S P  V+I E V +A 
Sbjct: 56  YAQYADRIDDLIVTYAVD-WEIDRMPVVDRSILRLGAYELVWMDSTPDAVVIDEAVQLAK 114

Query: 136 DFFYGDEPKFINAVLDKVSRKEEIKRS 162
           +F   D P F+N +L   +R +++K S
Sbjct: 115 EFSTDDSPAFVNGLL---ARFKDLKPS 138


>gi|213427852|ref|ZP_03360602.1| transcription antitermination protein NusB [Salmonella enterica
           subsp. enterica serovar Typhi str. E02-1180]
          Length = 139

 Score = 56.2 bits (134), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 46/145 (31%), Positives = 72/145 (49%), Gaps = 14/145 (9%)

Query: 10  LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF 69
           +KL+ R   AR  AVQALY   +      ++      Y+F A  E DV+ V    D+ +F
Sbjct: 1   MKLAARHR-ARECAVQALYSWQLSQNDIADV-----EYQFLA--EQDVKDV----DVLYF 48

Query: 70  RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISE 129
           R ++ GV     ++D L+   L+       L  +  ++LR  + EL +   VP +V I+E
Sbjct: 49  RELLSGVATNSAYLDGLMKPYLSR--LLEELGQVEKAVLRIALFELSKRSDVPYKVAINE 106

Query: 130 YVCIAHDFFYGDEPKFINAVLDKVS 154
            + +A  F   D  KF+N VLDK +
Sbjct: 107 AIELAKTFGAEDSHKFVNGVLDKAA 131


>gi|209517108|ref|ZP_03265955.1| NusB antitermination factor [Burkholderia sp. H160]
 gi|209502501|gb|EEA02510.1| NusB antitermination factor [Burkholderia sp. H160]
          Length = 144

 Score = 56.2 bits (134), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 43/145 (29%), Positives = 63/145 (43%), Gaps = 15/145 (10%)

Query: 10  LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF 69
           +K + RR  +R  A Q LYQ  + G    EI           D +L     Y   D E  
Sbjct: 1   MKSARRR--SRELATQGLYQWLLSGSPGGEI-----------DAQLRGAQGYDKADHEHL 47

Query: 70  RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISE 129
             I+HGVM   + +   I+ CL       +L  +  ++L     EL     +P  V+I+E
Sbjct: 48  DAILHGVMRDSEALSAAIAPCLDR--PIDQLSPVERAVLLVAAFELKNHLDIPYRVVINE 105

Query: 130 YVCIAHDFFYGDEPKFINAVLDKVS 154
            V +   F   D  K++N VLDK+S
Sbjct: 106 AVELTKTFGGSDGYKYVNGVLDKLS 130


>gi|88811151|ref|ZP_01126407.1| transcription antitermination protein NusB [Nitrococcus mobilis
           Nb-231]
 gi|88791690|gb|EAR22801.1| transcription antitermination protein NusB [Nitrococcus mobilis
           Nb-231]
          Length = 157

 Score = 56.2 bits (134), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 42/144 (29%), Positives = 67/144 (46%), Gaps = 20/144 (13%)

Query: 24  VQALYQIDIIGCSTTEIISEY-ETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQH 82
           +QALYQ  +    + EI  ++ E +               HVDLE+F  +++ +  R   
Sbjct: 22  LQALYQWQLTAQDSAEIERQFLEEHNMA------------HVDLEYFAELLYEIPARLAS 69

Query: 83  IDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDE 142
           +D LI   L    +   +D +  +ILR G  EL +   +P  V+++E V +A  F     
Sbjct: 70  LDALIEPALDRPLAV--IDPVEKAILRMGTYELTQRLDIPYRVVVNEAVDLARLFGAEQS 127

Query: 143 PKFINAVLDKVS-----RKEEIKR 161
            ++IN VLD+V      R  EI R
Sbjct: 128 HRYINGVLDRVGHHTPLRAAEIGR 151


>gi|322420503|ref|YP_004199726.1| NusB antitermination factor [Geobacter sp. M18]
 gi|320126890|gb|ADW14450.1| NusB antitermination factor [Geobacter sp. M18]
          Length = 145

 Score = 56.2 bits (134), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 40/143 (27%), Positives = 71/143 (49%), Gaps = 8/143 (5%)

Query: 13  SHRRGIARLAAVQALYQIDII-GCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71
           + R G  R  A+QALY  D++   + T +   +E++    D  L   S       E    
Sbjct: 3   TRREG--RELALQALYSKDLVLQDANTTLKRIFESFGEGEDPTLSANSKAYAFASE---- 56

Query: 72  IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
           +++GV+   Q ID  I+   ++ WS +R+  +  +ILR  V EL+    +P  V ++E +
Sbjct: 57  LVNGVVTHLQEIDGRIAEK-SKHWSMARMARVDLNILRLAVFELLYRPDIPKNVTMNEAI 115

Query: 132 CIAHDFFYGDEPKFINAVLDKVS 154
            +A  F   D   F+N +LD+++
Sbjct: 116 EVAKKFGADDSASFVNGILDEIA 138


>gi|330824837|ref|YP_004388140.1| NusB antitermination factor [Alicycliphilus denitrificans K601]
 gi|329310209|gb|AEB84624.1| NusB antitermination factor [Alicycliphilus denitrificans K601]
          Length = 181

 Score = 56.2 bits (134), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 41/141 (29%), Positives = 68/141 (48%), Gaps = 13/141 (9%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           R  AR  A+QALYQ  + G   T I        F  D      S +   D   +  ++HG
Sbjct: 38  RSRAREFALQALYQHLVGGNDATAID------LFTRDL-----SGFHKADAAHYDALLHG 86

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
            ++  QH+D LI+  L  K   + +  I  +++  GV E   C  VP  V+I+E + +A 
Sbjct: 87  CIETAQHMDALIAPLLDRK--MAEISPIEHAVMWIGVYEFQHCPDVPWRVVINECIELAK 144

Query: 136 DFFYGDEPKFINAVLDKVSRK 156
           +F   D  K++N +L+ ++ +
Sbjct: 145 EFGGTDGHKYVNGILNGLAPQ 165


>gi|30250477|ref|NP_842547.1| antitermination protein NusB [Nitrosomonas europaea ATCC 19718]
 gi|39931886|sp|Q82S07|NUSB_NITEU RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|30139318|emb|CAD86470.1| Antitermination protein NusB [Nitrosomonas europaea ATCC 19718]
          Length = 167

 Score = 56.2 bits (134), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 36/143 (25%), Positives = 67/143 (46%), Gaps = 13/143 (9%)

Query: 14  HRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVII 73
           +RR ++R  A+Q +YQ  + G +  +I             +L   S +   D  +F  ++
Sbjct: 21  NRRRLSRELALQGIYQWQVTGGNARDI-----------GMQLQQVSFFSKADGPYFSDLL 69

Query: 74  HGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCI 133
            GV++    +   I   L  +   + L  + CSIL  G  E++    +P   II+E + +
Sbjct: 70  QGVLEHAADLQTQIQPHLDRQ--IAELSPVECSILLIGTYEMVYRPEIPCRAIINEAIEL 127

Query: 134 AHDFFYGDEPKFINAVLDKVSRK 156
           A  +   D  K++N VLDK++ +
Sbjct: 128 AKSYGGTDGHKYVNGVLDKLATR 150


>gi|125624663|ref|YP_001033146.1| transcription termination protein nusB [Lactococcus lactis subsp.
           cremoris MG1363]
 gi|124493471|emb|CAL98448.1| transcription termination protein nusB [Lactococcus lactis subsp.
           cremoris MG1363]
 gi|300071455|gb|ADJ60855.1| transcription termination protein nusB [Lactococcus lactis subsp.
           cremoris NZ9000]
          Length = 325

 Score = 56.2 bits (134), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 27/84 (32%), Positives = 50/84 (59%), Gaps = 1/84 (1%)

Query: 67  EWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVI 126
           E+F  ++ GV+++K+ +++ IS  L + WSFSRL ++  +IL+    E++     P  V 
Sbjct: 236 EYFTQLVDGVLEKKEDLEINISKYLAKNWSFSRLTLVEQAILQVSTYEIL-FTDTPNVVA 294

Query: 127 ISEYVCIAHDFFYGDEPKFINAVL 150
           ++E + ++ DF      +FIN VL
Sbjct: 295 VNEAIELSKDFSDEKSSRFINGVL 318


>gi|219847234|ref|YP_002461667.1| NusB antitermination factor [Chloroflexus aggregans DSM 9485]
 gi|254772623|sp|B8G2S7|NUSB_CHLAD RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|219541493|gb|ACL23231.1| NusB antitermination factor [Chloroflexus aggregans DSM 9485]
          Length = 150

 Score = 56.2 bits (134), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 34/146 (23%), Positives = 73/146 (50%), Gaps = 14/146 (9%)

Query: 10  LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF 69
           ++L+ +R   R+AA+Q L+++D    +  +++      R   D  +  ES       E+ 
Sbjct: 4   VRLASQRHRVRIAALQILFEVDETDHAIDQVLE-----RRLTDEPMSAESA------EFL 52

Query: 70  RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELI--ECHSVPVEVII 127
           R ++ G  + + ++D +I       W  +++  +  ++LR  + EL+  E    P++ +I
Sbjct: 53  RRLVFGTWEHRSYLDRIIEEA-APNWPVNQMPGVDKAVLRIALFELLIDEVEKTPIKAVI 111

Query: 128 SEYVCIAHDFFYGDEPKFINAVLDKV 153
           +E V +A +F   +  +F+N VL  V
Sbjct: 112 NEAVELAKEFGSDNSSRFVNGVLGTV 137


>gi|271964358|ref|YP_003338554.1| transcription antitermination factor NusB [Streptosporangium roseum
           DSM 43021]
 gi|270507533|gb|ACZ85811.1| transcription antitermination factor NusB [Streptosporangium roseum
           DSM 43021]
          Length = 136

 Score = 56.2 bits (134), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 27/86 (31%), Positives = 48/86 (55%), Gaps = 1/86 (1%)

Query: 67  EWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVI 126
           E+   I+ GV   +  ID LI++   E W+  R+  +  ++LR G  EL+    VP  V+
Sbjct: 42  EYTATIVEGVCRHRARIDELITT-YAEGWTLDRMPAVDRNLLRGGTYELLWMPDVPEGVV 100

Query: 127 ISEYVCIAHDFFYGDEPKFINAVLDK 152
           ISE+V +A +    + P+F+N ++ +
Sbjct: 101 ISEWVSLASELSTDESPQFVNGLMAR 126


>gi|73666920|ref|YP_302936.1| hypothetical protein Ecaj_0291 [Ehrlichia canis str. Jake]
 gi|72394061|gb|AAZ68338.1| hypothetical protein Ecaj_0291 [Ehrlichia canis str. Jake]
          Length = 148

 Score = 56.2 bits (134), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 32/92 (34%), Positives = 53/92 (57%), Gaps = 1/92 (1%)

Query: 62  LHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSV 121
           + +D +    I++ ++     I+  I++ L EKWS  R+++I  SI++  V ELI C + 
Sbjct: 28  IQIDNQLLIKIMNTMLLTFNTINSTIATFLNEKWSIDRINLISLSIIKTAVCELI-CSNT 86

Query: 122 PVEVIISEYVCIAHDFFYGDEPKFINAVLDKV 153
              +II+EYV IA       E  FINA+L++V
Sbjct: 87  DAVIIINEYVNIASHILEKTEVNFINAILNQV 118


>gi|116511490|ref|YP_808706.1| transcription termination factor [Lactococcus lactis subsp.
           cremoris SK11]
 gi|116107144|gb|ABJ72284.1| Transcription termination factor [Lactococcus lactis subsp.
           cremoris SK11]
          Length = 325

 Score = 56.2 bits (134), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 27/84 (32%), Positives = 50/84 (59%), Gaps = 1/84 (1%)

Query: 67  EWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVI 126
           E+F  ++ GV+++K+ +++ IS  L + WSFSRL ++  +IL+    E++     P  V 
Sbjct: 236 EYFTQLVDGVLEKKEDLEINISKYLAKNWSFSRLTLVEQAILQVSTYEIL-FTDTPNVVA 294

Query: 127 ISEYVCIAHDFFYGDEPKFINAVL 150
           ++E + ++ DF      +FIN VL
Sbjct: 295 VNEAIELSKDFSDEKSSRFINGVL 318


>gi|332686256|ref|YP_004456030.1| transcription termination protein NusB [Melissococcus plutonius
           ATCC 35311]
 gi|332370265|dbj|BAK21221.1| transcription termination protein NusB [Melissococcus plutonius
           ATCC 35311]
          Length = 158

 Score = 56.2 bits (134), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 40/143 (27%), Positives = 66/143 (46%), Gaps = 12/143 (8%)

Query: 15  RRGIARLAAVQALYQIDIIGCSTTEIISEY----ETYRFCADTELDVESVYLHVDLEWFR 70
           RR I R  A+QAL+ +D     T +   +Y    + Y   ++ + ++   YL        
Sbjct: 8   RREI-REKALQALFPLDFNTELTKQDAIDYALMLDNYEVISEDQENLIPTYLDF------ 60

Query: 71  VIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEY 130
            ++ GV   K  +D +I   L + W+F RL  I   ILR  V E++    VP  V ++E 
Sbjct: 61  -LVDGVCSHKNELDQVIKRLLGKNWTFERLSKIDTVILRMAVFEMMYSSDVPAPVALNEA 119

Query: 131 VCIAHDFFYGDEPKFINAVLDKV 153
           + +A  +   +  KF N +L  V
Sbjct: 120 LELAKKYSDDNARKFTNGILANV 142


>gi|327392955|dbj|BAK10377.1| N utilization substance protein B NusB [Pantoea ananatis AJ13355]
          Length = 139

 Score = 55.8 bits (133), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 43/139 (30%), Positives = 68/139 (48%), Gaps = 13/139 (9%)

Query: 23  AVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQH 82
           AVQALY   +      ++      Y+F A  E DV+ V    D+ +FR ++ GV     +
Sbjct: 13  AVQALYSWQLSNNDIADV-----EYQFLA--EQDVKDV----DITYFRELLSGVATNSAY 61

Query: 83  IDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDE 142
           +D L+   L+ +     L  +  +ILR  + EL +   VP +V I+E + +A  F   D 
Sbjct: 62  LDGLMKPYLSRQ--LEELGQVEKAILRISLYELSKRSDVPYKVAINEGIELAKVFGAEDS 119

Query: 143 PKFINAVLDKVSRKEEIKR 161
            KF+N VLDK   +   +R
Sbjct: 120 HKFVNGVLDKAGPQIRPQR 138


>gi|16759395|ref|NP_455012.1| transcription antitermination protein NusB [Salmonella enterica
           subsp. enterica serovar Typhi str. CT18]
 gi|29142833|ref|NP_806175.1| transcription antitermination protein NusB [Salmonella enterica
           subsp. enterica serovar Typhi str. Ty2]
 gi|213027238|ref|ZP_03341685.1| transcription antitermination protein NusB [Salmonella enterica
           subsp. enterica serovar Typhi str. 404ty]
 gi|213163226|ref|ZP_03348936.1| transcription antitermination protein NusB [Salmonella enterica
           subsp. enterica serovar Typhi str. E00-7866]
 gi|213418053|ref|ZP_03351130.1| transcription antitermination protein NusB [Salmonella enterica
           subsp. enterica serovar Typhi str. E01-6750]
 gi|213579887|ref|ZP_03361713.1| transcription antitermination protein NusB [Salmonella enterica
           subsp. enterica serovar Typhi str. E98-0664]
 gi|213615893|ref|ZP_03371719.1| transcription antitermination protein NusB [Salmonella enterica
           subsp. enterica serovar Typhi str. E98-2068]
 gi|213650170|ref|ZP_03380223.1| transcription antitermination protein NusB [Salmonella enterica
           subsp. enterica serovar Typhi str. J185]
 gi|213855378|ref|ZP_03383618.1| transcription antitermination protein NusB [Salmonella enterica
           subsp. enterica serovar Typhi str. M223]
 gi|289804986|ref|ZP_06535615.1| transcription antitermination protein NusB [Salmonella enterica
           subsp. enterica serovar Typhi str. AG3]
 gi|289825061|ref|ZP_06544413.1| transcription antitermination protein NusB [Salmonella enterica
           subsp. enterica serovar Typhi str. E98-3139]
 gi|22095954|sp|Q8Z8X6|NUSB_SALTI RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|25299803|pir||AB0554 N utilization substance protein B [imported] - Salmonella enterica
           subsp. enterica serovar Typhi (strain CT18)
 gi|16501686|emb|CAD08874.1| N utilization substance protein B [Salmonella enterica subsp.
           enterica serovar Typhi]
 gi|29138465|gb|AAO70035.1| N utilization substance protein B [Salmonella enterica subsp.
           enterica serovar Typhi str. Ty2]
          Length = 139

 Score = 55.8 bits (133), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 44/139 (31%), Positives = 68/139 (48%), Gaps = 13/139 (9%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           R  AR  AVQALY   +      ++      Y+F A  E DV+ V    D+ +FR ++ G
Sbjct: 6   RHRARECAVQALYSWQLSQNDIADV-----EYQFLA--EQDVKDV----DVLYFRELLSG 54

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
           V     ++D L+   L+       L  +  ++LR  + EL +   VP +V I+E + +A 
Sbjct: 55  VATNSAYLDGLMKPYLSR--LLEELGQVEKAVLRIALFELSKRSDVPYKVAINEAIELAK 112

Query: 136 DFFYGDEPKFINAVLDKVS 154
            F   D  KF+N VLDK +
Sbjct: 113 TFGAEDSHKFVNGVLDKAA 131


>gi|224532931|ref|ZP_03673541.1| transcription antitermination factor NusB [Borrelia burgdorferi
           WI91-23]
 gi|224512130|gb|EEF82521.1| transcription antitermination factor NusB [Borrelia burgdorferi
           WI91-23]
          Length = 145

 Score = 55.8 bits (133), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 40/140 (28%), Positives = 67/140 (47%), Gaps = 9/140 (6%)

Query: 20  RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79
           R+ A Q +Y IDI   +  +I   +       D +LD+E+  +     ++  ++ G  + 
Sbjct: 8   RVLAFQKIYSIDINQSAMDDIFDIFN----IEDKDLDIENESIK---SFYSSLVIGTFNN 60

Query: 80  KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLEL-IECHSVPVEVIISEYVCIAHDFF 138
            +HID LI   ++  WS  R+D +  +ILR GV  L  +        II E + IA  + 
Sbjct: 61  LEHIDSLIRD-ISLNWSLERMDKVDLAILRMGVYSLKFQNFENSKRAIIDEAILIAKKYG 119

Query: 139 YGDEPKFINAVLDKVSRKEE 158
             +  KFIN +LD + +  E
Sbjct: 120 SKNSYKFINGILDALLKNME 139


>gi|169824540|ref|YP_001692151.1| transcription terminator [Finegoldia magna ATCC 29328]
 gi|297588522|ref|ZP_06947165.1| transcription antitermination factor NusB [Finegoldia magna ATCC
           53516]
 gi|303233660|ref|ZP_07320314.1| transcription antitermination factor NusB [Finegoldia magna
           BVS033A4]
 gi|238687751|sp|B0S1M1|NUSB_FINM2 RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|167831345|dbj|BAG08261.1| transcription terminator [Finegoldia magna ATCC 29328]
 gi|297573895|gb|EFH92616.1| transcription antitermination factor NusB [Finegoldia magna ATCC
           53516]
 gi|302495094|gb|EFL54846.1| transcription antitermination factor NusB [Finegoldia magna
           BVS033A4]
          Length = 137

 Score = 55.8 bits (133), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 39/145 (26%), Positives = 76/145 (52%), Gaps = 16/145 (11%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           R  +R +A+Q +Y++++ G    + I E     FC    ++        D+E+F+ I+  
Sbjct: 3   RRQSRKSAMQLIYEMNMNGDYDKQRIEE-----FCKYQNIN------KNDIEFFKEIVLN 51

Query: 76  VMDRKQHIDLLIS--SCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCI 133
            +   +HID +++     T++W+  R++ +  SIL+ GV E++   S P  V I+E V +
Sbjct: 52  FI---EHIDDIVNIIENNTKQWNLDRINKLDLSILQVGVCEILYVESTPDSVAINEAVEL 108

Query: 134 AHDFFYGDEPKFINAVLDKVSRKEE 158
           A ++       FIN +L  V +++E
Sbjct: 109 AKEYSTEKSYSFINGILGSVLKRKE 133


>gi|308185886|ref|YP_003930017.1| N utilization substance protein B [Pantoea vagans C9-1]
 gi|308056396|gb|ADO08568.1| N utilization substance protein B [Pantoea vagans C9-1]
          Length = 139

 Score = 55.8 bits (133), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 42/132 (31%), Positives = 65/132 (49%), Gaps = 13/132 (9%)

Query: 23  AVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQH 82
           AVQALY   +      ++      Y+F A  E DV+ V    D+ +FR ++ GV     +
Sbjct: 13  AVQALYSWQLSNNDIADV-----EYQFLA--EQDVKDV----DITYFRELLSGVATNSAY 61

Query: 83  IDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDE 142
           +D L+   L+ +     L  +  +ILR  + EL +   VP +V I+E + +A  F   D 
Sbjct: 62  LDGLMKPYLSRQ--LEELGQVEKAILRISLYELSKRDDVPYKVAINEGIELAKVFGAEDS 119

Query: 143 PKFINAVLDKVS 154
            KF+N VLDK  
Sbjct: 120 HKFVNGVLDKAG 131


>gi|262042439|ref|ZP_06015599.1| transcription termination/antitermination factor NusB [Klebsiella
           pneumoniae subsp. rhinoscleromatis ATCC 13884]
 gi|259040214|gb|EEW41325.1| transcription termination/antitermination factor NusB [Klebsiella
           pneumoniae subsp. rhinoscleromatis ATCC 13884]
          Length = 139

 Score = 55.8 bits (133), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 41/132 (31%), Positives = 67/132 (50%), Gaps = 13/132 (9%)

Query: 23  AVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQH 82
           AVQALY   +      ++      Y+F A  E DV+    +VD+ +FR ++ GV     +
Sbjct: 13  AVQALYSWQLSHNDIADV-----EYQFLA--EQDVK----YVDVLYFRELLSGVATNSAY 61

Query: 83  IDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDE 142
           +D L+   L+ +     L  +  ++LR  + EL +   VP +V I+E + +A  F   D 
Sbjct: 62  LDGLMKPYLSRQ--LEELGQVEKAVLRIALFELSKRDDVPYKVAINEAIELAKTFGAEDS 119

Query: 143 PKFINAVLDKVS 154
            KF+N VLDK +
Sbjct: 120 HKFVNGVLDKAA 131


>gi|312149672|gb|ADQ29743.1| transcription antitermination factor NusB [Borrelia burgdorferi
           N40]
          Length = 142

 Score = 55.8 bits (133), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 40/140 (28%), Positives = 67/140 (47%), Gaps = 9/140 (6%)

Query: 20  RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79
           R+ A Q +Y IDI   +  +I   +       D +LD+E+  +     ++  ++ G  + 
Sbjct: 5   RVLAFQKIYSIDINQSAMDDIFDIFN----IEDKDLDIENESIK---SFYSSLVIGTFNN 57

Query: 80  KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLEL-IECHSVPVEVIISEYVCIAHDFF 138
            +HID LI   ++  WS  R+D +  +ILR GV  L  +        II E + IA  + 
Sbjct: 58  LEHIDSLIRD-ISLNWSLERMDKVDLAILRMGVYSLKFQNFENSKRAIIDEAILIAKKYG 116

Query: 139 YGDEPKFINAVLDKVSRKEE 158
             +  KFIN +LD + +  E
Sbjct: 117 SKNSYKFINGILDALLKNME 136


>gi|254383581|ref|ZP_04998931.1| transcription antitermination protein NusB [Streptomyces sp. Mg1]
 gi|194342476|gb|EDX23442.1| transcription antitermination protein NusB [Streptomyces sp. Mg1]
          Length = 144

 Score = 55.8 bits (133), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 38/148 (25%), Positives = 68/148 (45%), Gaps = 10/148 (6%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           R  AR  A Q L++ D  G    ++++++  +    D +  V +  +         ++ G
Sbjct: 4   RSNARKRAFQILFEADQRGVPVRDVLADWIRHARSDDRQPPVSAFTMD--------LVEG 55

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
             D+   ID LI +   + W   R+ ++  +I+R G  ELI     P  V I E V +A 
Sbjct: 56  YADKVNRIDDLIITYAVD-WDLDRMPVVDRNIVRLGAYELIWVDDTPDAVAIDEAVQLAK 114

Query: 136 DFFYGDEPKFINAVLDKVSR-KEEIKRS 162
           +F   + P F+N +L +    K  ++RS
Sbjct: 115 EFSTDESPSFVNGLLARFKDLKPSLRRS 142


>gi|319442128|ref|ZP_07991284.1| transcription antitermination protein NusB [Corynebacterium
           variabile DSM 44702]
          Length = 190

 Score = 55.8 bits (133), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 27/89 (30%), Positives = 49/89 (55%), Gaps = 1/89 (1%)

Query: 72  IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHS-VPVEVIISEY 130
           I+ GV +    ID  I+  L+ +W+  RL  +  ++LR    EL+  H  +P +V + E 
Sbjct: 62  IVGGVAENLDGIDGAIAGHLSSEWTLDRLPAVDRAVLRVSAWELLHNHDEIPEKVAVDEG 121

Query: 131 VCIAHDFFYGDEPKFINAVLDKVSRKEEI 159
           + +A ++ +   P +++AVLD +SR   I
Sbjct: 122 IGLAKEYGHDKAPGYVHAVLDGISRSRRI 150


>gi|311280694|ref|YP_003942925.1| NusB antitermination factor [Enterobacter cloacae SCF1]
 gi|308749889|gb|ADO49641.1| NusB antitermination factor [Enterobacter cloacae SCF1]
          Length = 139

 Score = 55.8 bits (133), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 41/132 (31%), Positives = 66/132 (50%), Gaps = 13/132 (9%)

Query: 23  AVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQH 82
           AVQALY   +      ++      Y+F A  E DV+ V    D+ +FR ++ GV     +
Sbjct: 13  AVQALYSWQLSKNDIADV-----EYQFLA--EQDVKDV----DVLYFRELLSGVATNSAY 61

Query: 83  IDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDE 142
           +D L+   L+ +     L  +  ++LR  + EL +   VP +V I+E + +A  F   D 
Sbjct: 62  LDGLMKPYLSRQ--LEELGQVEKAVLRIALFELSKRDDVPYKVAINEAIELAKTFGAEDS 119

Query: 143 PKFINAVLDKVS 154
            KF+N VLDK +
Sbjct: 120 HKFVNGVLDKAA 131


>gi|21219991|ref|NP_625770.1| transcription antitermination protein NusB [Streptomyces coelicolor
           A3(2)]
 gi|256788910|ref|ZP_05527341.1| transcription antitermination protein NusB [Streptomyces lividans
           TK24]
 gi|289772797|ref|ZP_06532175.1| transcription antitermination factor NusB [Streptomyces lividans
           TK24]
 gi|22095971|sp|Q9KXR0|NUSB_STRCO RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|8249949|emb|CAB93370.1| putative NusB-family protein [Streptomyces coelicolor A3(2)]
 gi|289702996|gb|EFD70425.1| transcription antitermination factor NusB [Streptomyces lividans
           TK24]
          Length = 142

 Score = 55.8 bits (133), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 38/147 (25%), Positives = 68/147 (46%), Gaps = 12/147 (8%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           R  AR  A Q L++ D  G     +++++  +      +  V    +         ++ G
Sbjct: 4   RNTARKRAFQILFEGDQRGADVLTVLADWVRHSRSDTRQPPVSEYTME--------LVEG 55

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
              R + ID LI+    + W+  R+ ++  +ILR G  EL+   + P  V++ E V +A 
Sbjct: 56  YAGRAERIDELIAQYSVD-WTLDRMPVVDRNILRLGAYELLWVDATPDAVVLDEMVQLAK 114

Query: 136 DFFYGDEPKFINAVLDKVSRKEEIKRS 162
           +F   + P FIN +L    R +E+K S
Sbjct: 115 EFSTDESPAFINGLL---GRLKELKPS 138


>gi|262274775|ref|ZP_06052586.1| transcription termination protein NusB [Grimontia hollisae CIP
           101886]
 gi|262221338|gb|EEY72652.1| transcription termination protein NusB [Grimontia hollisae CIP
           101886]
          Length = 151

 Score = 55.8 bits (133), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 42/147 (28%), Positives = 72/147 (48%), Gaps = 6/147 (4%)

Query: 10  LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEY---ETYRFCADTELDVESVYLHVDL 66
           +K + RR  AR  A+QA+Y   +   +  +I +++   + Y        +        D+
Sbjct: 1   MKPAARRN-ARHFALQAIYSWQLTKDNVADIEAQFLAADNYEEEEHQAEEPRLRQPETDV 59

Query: 67  EWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVI 126
           E+FR ++ GV+   Q +D  +   L+       LD +  +ILR  + EL +   VP +V+
Sbjct: 60  EYFRDLLSGVVLNYQELDSKMRPYLSR--PLQDLDEMEHAILRLSMYELCKREDVPYKVV 117

Query: 127 ISEYVCIAHDFFYGDEPKFINAVLDKV 153
           I+E + +A  F   D  KF+N VLDK 
Sbjct: 118 INEAIELAKRFGAEDSHKFVNGVLDKA 144


>gi|269127152|ref|YP_003300522.1| NusB antitermination factor [Thermomonospora curvata DSM 43183]
 gi|268312110|gb|ACY98484.1| NusB antitermination factor [Thermomonospora curvata DSM 43183]
          Length = 138

 Score = 55.8 bits (133), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 26/84 (30%), Positives = 48/84 (57%), Gaps = 1/84 (1%)

Query: 72  IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
           +I GV + ++ ID L+++  T  W+  R+  +  ++LR G  EL+    VP  V I+E V
Sbjct: 49  LIEGVQEHRERIDELLATYAT-GWTLDRMPAVDRNLLRLGAYELLWVDDVPDGVAIAEAV 107

Query: 132 CIAHDFFYGDEPKFINAVLDKVSR 155
            +A +    + P+F+N +L ++ R
Sbjct: 108 ALATELSTDESPRFVNGLLSRLQR 131


>gi|239932425|ref|ZP_04689378.1| transcription antitermination protein NusB [Streptomyces ghanaensis
           ATCC 14672]
 gi|291440791|ref|ZP_06580181.1| transcription antitermination protein NusB [Streptomyces ghanaensis
           ATCC 14672]
 gi|291343686|gb|EFE70642.1| transcription antitermination protein NusB [Streptomyces ghanaensis
           ATCC 14672]
          Length = 144

 Score = 55.8 bits (133), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 39/147 (26%), Positives = 67/147 (45%), Gaps = 12/147 (8%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           R  AR  A Q L++ D  G     +++++  +      +  V    +         ++ G
Sbjct: 4   RNTARKRAFQILFEGDQRGADVLTVLADWIRHSRTDTRQPPVSEYTMQ--------LVEG 55

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
             +  Q ID LI+   +  W+  R+ ++  SILR G  EL+     P  V++ E V +A 
Sbjct: 56  YAEHAQRIDGLIAQY-SVGWTLDRMPVVDRSILRLGAYELLWVDETPDAVVLDEMVQLAK 114

Query: 136 DFFYGDEPKFINAVLDKVSRKEEIKRS 162
           +F   + P FIN +L    R +E+K S
Sbjct: 115 EFSTDESPSFINGLL---GRLKELKPS 138


>gi|182439837|ref|YP_001827556.1| transcription antitermination protein NusB [Streptomyces griseus
           subsp. griseus NBRC 13350]
 gi|326780501|ref|ZP_08239766.1| NusB antitermination factor [Streptomyces cf. griseus XylebKG-1]
 gi|238689031|sp|B1W456|NUSB_STRGG RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|178468353|dbj|BAG22873.1| putative NusB-family protein [Streptomyces griseus subsp. griseus
           NBRC 13350]
 gi|326660834|gb|EGE45680.1| NusB antitermination factor [Streptomyces cf. griseus XylebKG-1]
          Length = 143

 Score = 55.8 bits (133), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 38/135 (28%), Positives = 59/135 (43%), Gaps = 9/135 (6%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           R  AR  A Q L++ D  G S   +++++       D +  V    +         ++ G
Sbjct: 4   RNKARKRAFQILFEADQRGESVQSVLADWVRLSRTDDRQPPVGEFTME--------LVEG 55

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
                  ID LI +   + W   R+ ++  SILR G  ELI     P  V+I E V +A 
Sbjct: 56  YAQYADRIDDLIVTYAVD-WEIDRMPVVDRSILRLGAYELIWMDGTPDAVVIDEAVQLAK 114

Query: 136 DFFYGDEPKFINAVL 150
           +F   D P F+N +L
Sbjct: 115 EFSTDDSPSFVNGLL 129


>gi|262277174|ref|ZP_06054967.1| N utilization substance protein B [alpha proteobacterium HIMB114]
 gi|262224277|gb|EEY74736.1| N utilization substance protein B [alpha proteobacterium HIMB114]
          Length = 127

 Score = 55.8 bits (133), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 22/86 (25%), Positives = 50/86 (58%)

Query: 70  RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISE 129
           + +  G  ++++ ++ ++S  L+ +     LD +L  IL+  + EL  C  +P +V+I++
Sbjct: 36  KKVFKGYFEQEEQLNEILSRSLSAEIKQKNLDSLLNIILKTSIYELKFCEKIPFKVVINQ 95

Query: 130 YVCIAHDFFYGDEPKFINAVLDKVSR 155
           Y+ +   F+  D+ + +N VLD V++
Sbjct: 96  YLDVTAQFYGNDQKRLVNGVLDNVAK 121


>gi|195941845|ref|ZP_03087227.1| transcription antitermination protein NusB [Borrelia burgdorferi
           80a]
 gi|225549246|ref|ZP_03770219.1| transcription antitermination factor NusB [Borrelia burgdorferi
           94a]
 gi|225370104|gb|EEG99544.1| transcription antitermination factor NusB [Borrelia burgdorferi
           94a]
          Length = 142

 Score = 55.8 bits (133), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 40/140 (28%), Positives = 67/140 (47%), Gaps = 9/140 (6%)

Query: 20  RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79
           R+ A Q +Y IDI   +  +I   +       D +LD+E+  +     ++  ++ G  + 
Sbjct: 5   RVLAFQKIYSIDINQSAMDDIFDIFN----IEDKDLDIENESIK---SFYSSLVIGTFNN 57

Query: 80  KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLEL-IECHSVPVEVIISEYVCIAHDFF 138
            +HID LI   ++  WS  R+D +  +ILR GV  L  +        II E + IA  + 
Sbjct: 58  LEHIDSLIRD-ISLNWSLERMDKVDLAILRMGVYSLKFQNFENSKRAIIDEAILIAKKYG 116

Query: 139 YGDEPKFINAVLDKVSRKEE 158
             +  KFIN +LD + +  E
Sbjct: 117 SKNSYKFINGILDALLKNME 136


>gi|16800464|ref|NP_470732.1| transcription antitermination protein NusB [Listeria innocua
           Clip11262]
 gi|22095959|sp|Q92BZ5|NUSB_LISIN RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|16413869|emb|CAC96627.1| lin1396 [Listeria innocua Clip11262]
 gi|313619077|gb|EFR90883.1| transcription antitermination factor NusB [Listeria innocua FSL
           S4-378]
 gi|313623883|gb|EFR93998.1| transcription antitermination factor NusB [Listeria innocua FSL
           J1-023]
          Length = 128

 Score = 55.8 bits (133), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 44/142 (30%), Positives = 67/142 (47%), Gaps = 21/142 (14%)

Query: 15  RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74
           +R  AR  A+QAL+QI++   S  + I      +   + E D          ++   ++ 
Sbjct: 2   KRREAREKALQALFQIELNEMSLDQAI------KNIMEDEQD----------DYMEQLVE 45

Query: 75  GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134
           GVM  K  ID +I   L + W   RL+ +  S+LR  V E+     VP  V ++E + IA
Sbjct: 46  GVMANKAEIDAIIEPNL-DNWRIDRLNKVDLSLLRLSVYEIKYLDDVPNRVSLNESIEIA 104

Query: 135 HDFFYGDEP--KFINAVLDKVS 154
               Y DE   KFIN VL  ++
Sbjct: 105 K--IYSDEKSSKFINGVLANIA 124


>gi|302525862|ref|ZP_07278204.1| transcription antitermination factor NusB [Streptomyces sp. AA4]
 gi|302434757|gb|EFL06573.1| transcription antitermination factor NusB [Streptomyces sp. AA4]
          Length = 152

 Score = 55.8 bits (133), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 25/83 (30%), Positives = 46/83 (55%), Gaps = 1/83 (1%)

Query: 72  IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
           ++ GV   ++ ID L++   ++ W+  R+  +  ++LR GV E++    VP  V I E V
Sbjct: 61  VVEGVTAHRERIDELLAEH-SQGWTLERMPPVDLAVLRVGVYEMLWSADVPDAVAIDEAV 119

Query: 132 CIAHDFFYGDEPKFINAVLDKVS 154
            +A +    D P+F+N VL ++ 
Sbjct: 120 GLAKELSTDDSPRFVNGVLGRIG 142


>gi|167627528|ref|YP_001678028.1| transcription termination factor [Francisella philomiragia subsp.
           philomiragia ATCC 25017]
 gi|241668097|ref|ZP_04755675.1| transcription termination factor [Francisella philomiragia subsp.
           philomiragia ATCC 25015]
 gi|254876632|ref|ZP_05249342.1| transcription termination factor [Francisella philomiragia subsp.
           philomiragia ATCC 25015]
 gi|167597529|gb|ABZ87527.1| transcription termination factor [Francisella philomiragia subsp.
           philomiragia ATCC 25017]
 gi|254842653|gb|EET21067.1| transcription termination factor [Francisella philomiragia subsp.
           philomiragia ATCC 25015]
          Length = 141

 Score = 55.8 bits (133), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 44/147 (29%), Positives = 73/147 (49%), Gaps = 13/147 (8%)

Query: 10  LKLSHR-RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEW 68
           +K + R R  ARL  VQALYQ  +   + +E+ ++Y      AD   + E  Y   DL  
Sbjct: 1   MKTTARARNNARLYTVQALYQKKVADHTFSELKTQY-----YAD---NAERHYTDWDL-- 50

Query: 69  FRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIIS 128
           F  ++  V + +  I+  I      K     ++ +  ++L+  + ELIEC   P ++II 
Sbjct: 51  FYRLMDAVRENQDTINNYIQD--NSKNGIESINYVDYAVLQVAIAELIECLENPYQIIIK 108

Query: 129 EYVCIAHDFFYGDEPKFINAVLDKVSR 155
           EYV I +     +  KF+NAVL  +++
Sbjct: 109 EYVEICYSMGTEEGYKFVNAVLQNLAK 135


>gi|113969444|ref|YP_733237.1| transcription antitermination protein NusB [Shewanella sp. MR-4]
 gi|114046672|ref|YP_737222.1| transcription antitermination protein NusB [Shewanella sp. MR-7]
 gi|117919549|ref|YP_868741.1| transcription antitermination protein NusB [Shewanella sp. ANA-3]
 gi|119390820|sp|Q0HL87|NUSB_SHESM RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|119390821|sp|Q0HXJ0|NUSB_SHESR RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|166215719|sp|A0KU66|NUSB_SHESA RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|113884128|gb|ABI38180.1| NusB antitermination factor [Shewanella sp. MR-4]
 gi|113888114|gb|ABI42165.1| NusB antitermination factor [Shewanella sp. MR-7]
 gi|117611881|gb|ABK47335.1| NusB antitermination factor [Shewanella sp. ANA-3]
          Length = 134

 Score = 55.8 bits (133), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 47/148 (31%), Positives = 72/148 (48%), Gaps = 15/148 (10%)

Query: 10  LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF 69
           +K S RR   RLA VQA+Y   + G +  ++  E+E   F  +  LD       VD+ +F
Sbjct: 1   MKPSERRKARRLA-VQAIYSWQLSGNNIADV--EHE---FLTEQSLD------GVDVAYF 48

Query: 70  RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISE 129
           R +  GV  +K  +D L    L        +  +  +I+R    EL     VP +V I+E
Sbjct: 49  RELFAGVATKKTQLDELFIPHLDR--PIDEVSPVEKAIVRLAAYELTFRKDVPFKVAINE 106

Query: 130 YVCIAHDFFYGDEPKFINAVLDK-VSRK 156
            + +A  F   +  KF+N +LDK V+RK
Sbjct: 107 AIELAKAFGADESHKFVNGLLDKLVARK 134


>gi|216264330|ref|ZP_03436322.1| transcription antitermination factor NusB [Borrelia burgdorferi
           156a]
 gi|221217510|ref|ZP_03588981.1| transcription antitermination factor NusB [Borrelia burgdorferi
           72a]
 gi|223889204|ref|ZP_03623793.1| transcription antitermination factor NusB [Borrelia burgdorferi
           64b]
 gi|225549846|ref|ZP_03770808.1| transcription antitermination factor NusB [Borrelia burgdorferi
           118a]
 gi|215980803|gb|EEC21610.1| transcription antitermination factor NusB [Borrelia burgdorferi
           156a]
 gi|221192788|gb|EEE19004.1| transcription antitermination factor NusB [Borrelia burgdorferi
           72a]
 gi|223885453|gb|EEF56554.1| transcription antitermination factor NusB [Borrelia burgdorferi
           64b]
 gi|225369537|gb|EEG98988.1| transcription antitermination factor NusB [Borrelia burgdorferi
           118a]
          Length = 145

 Score = 55.5 bits (132), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 40/140 (28%), Positives = 67/140 (47%), Gaps = 9/140 (6%)

Query: 20  RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79
           R+ A Q +Y IDI   +  +I   +       D +LD+E+  +     ++  ++ G  + 
Sbjct: 8   RVLAFQKIYSIDINQSAMDDIFDIFN----IEDKDLDIENESIK---SFYSSLVIGTFNN 60

Query: 80  KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLEL-IECHSVPVEVIISEYVCIAHDFF 138
            +HID LI   ++  WS  R+D +  +ILR GV  L  +        II E + IA  + 
Sbjct: 61  LEHIDSLIRD-ISLNWSLERMDKVDLAILRMGVYSLKFQNFENSKRAIIDEAILIAKKYG 119

Query: 139 YGDEPKFINAVLDKVSRKEE 158
             +  KFIN +LD + +  E
Sbjct: 120 SKNSYKFINGILDALLKNME 139


>gi|119716645|ref|YP_923610.1| transcription antitermination factor NusB [Nocardioides sp. JS614]
 gi|166215705|sp|A1SJD8|NUSB_NOCSJ RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|119537306|gb|ABL81923.1| NusB antitermination factor [Nocardioides sp. JS614]
          Length = 135

 Score = 55.5 bits (132), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 26/91 (28%), Positives = 50/91 (54%), Gaps = 1/91 (1%)

Query: 67  EWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVI 126
           ++   ++ GV++ +  ID L+SS  +  W+  R+  +  ++LR GV EL+    VP  V 
Sbjct: 42  DYTATLVRGVVEHQARIDELLSSY-SHGWALDRMPAVDRNVLRLGVWELLYADDVPDAVA 100

Query: 127 ISEYVCIAHDFFYGDEPKFINAVLDKVSRKE 157
           +SE + +  D    + P+F+N +L  + R +
Sbjct: 101 VSEAMALVTDLSTDESPQFVNGILGSIVRNK 131


>gi|300715571|ref|YP_003740374.1| N utilization substance protein B [Erwinia billingiae Eb661]
 gi|299061407|emb|CAX58517.1| N utilization substance protein B [Erwinia billingiae Eb661]
          Length = 139

 Score = 55.5 bits (132), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 45/132 (34%), Positives = 69/132 (52%), Gaps = 13/132 (9%)

Query: 23  AVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQH 82
           AVQALY   +    +   IS+ E Y+F A  E DV+ V    D+ +FR ++ GV     +
Sbjct: 13  AVQALYSWQL----SKNDISDVE-YQFLA--EQDVKDV----DISYFRELLVGVATNSAY 61

Query: 83  IDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDE 142
           +D L+   L+ +     L  +  +ILR  + EL +   VP +V I+E + +A  F   D 
Sbjct: 62  LDGLMKPYLSRQ--LEELGQVEKAILRISLFELSKRADVPYKVAINEGIELAKVFGAEDS 119

Query: 143 PKFINAVLDKVS 154
            KF+N VLDK +
Sbjct: 120 HKFVNGVLDKAA 131


>gi|229135004|ref|ZP_04263810.1| N utilization substance protein B [Bacillus cereus BDRD-ST196]
 gi|228648506|gb|EEL04535.1| N utilization substance protein B [Bacillus cereus BDRD-ST196]
          Length = 120

 Score = 55.5 bits (132), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 41/130 (31%), Positives = 61/130 (46%), Gaps = 14/130 (10%)

Query: 24  VQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHI 83
           +QALYQ+DI G        E E      +T  + E        E+   ++ G +D K+ I
Sbjct: 1   MQALYQMDITG--------ELEPKVAVENTLDEGEETN-----EFLESLVVGFVDNKEEI 47

Query: 84  DLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEP 143
           D  I   L +KW   R+ ++  SILR  V E+     +P  V I+E + IA  F   +  
Sbjct: 48  DAAIRQNL-KKWKLERISIVDRSILRVAVCEMKYMEEIPHNVTINEAIEIAKTFGDEESR 106

Query: 144 KFINAVLDKV 153
           +FIN VL  +
Sbjct: 107 RFINGVLSNI 116


>gi|315282224|ref|ZP_07870678.1| transcription antitermination factor NusB [Listeria marthii FSL
           S4-120]
 gi|313614126|gb|EFR87816.1| transcription antitermination factor NusB [Listeria marthii FSL
           S4-120]
          Length = 128

 Score = 55.5 bits (132), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 44/142 (30%), Positives = 66/142 (46%), Gaps = 21/142 (14%)

Query: 15  RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74
           +R  AR  A+QAL+QI++   S  + I      +   + E D          ++   ++ 
Sbjct: 2   KRREAREKALQALFQIELNEMSLDQAI------KNIMEDEQD----------DYMEKLVE 45

Query: 75  GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134
           GVM  K  ID +I   L + W   RL  +  S+LR  V E+     VP  V ++E + IA
Sbjct: 46  GVMANKAEIDAIIEPNL-DNWRMDRLSKVDLSLLRVSVYEIKYLDDVPNRVSLNESIEIA 104

Query: 135 HDFFYGDEP--KFINAVLDKVS 154
               Y DE   KFIN VL  ++
Sbjct: 105 K--IYSDEKSSKFINGVLANIA 124


>gi|55821710|ref|YP_140152.1| transcription antitermination protein NusB [Streptococcus
           thermophilus LMG 18311]
 gi|55823630|ref|YP_142071.1| transcription antitermination protein NusB [Streptococcus
           thermophilus CNRZ1066]
 gi|116628433|ref|YP_821052.1| transcription antitermination protein NusB [Streptococcus
           thermophilus LMD-9]
 gi|81558964|sp|Q5LY62|NUSB_STRT1 RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|81560152|sp|Q5M2R7|NUSB_STRT2 RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|122266972|sp|Q03IW6|NUSB_STRTD RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|55737695|gb|AAV61337.1| transcriptional termination factor [Streptococcus thermophilus LMG
           18311]
 gi|55739615|gb|AAV63256.1| transcriptional termination factor [Streptococcus thermophilus
           CNRZ1066]
 gi|116101710|gb|ABJ66856.1| Transcription termination factor [Streptococcus thermophilus LMD-9]
 gi|312279051|gb|ADQ63708.1| Transcription antitermination factor NusB [Streptococcus
           thermophilus ND03]
          Length = 144

 Score = 55.5 bits (132), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 46/151 (30%), Positives = 70/151 (46%), Gaps = 18/151 (11%)

Query: 3   IQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYL 62
            +D+++DL         R  A Q L+ ++  G +  +    Y TY    D  +D E+   
Sbjct: 5   FKDSRRDL---------RERAFQTLFALEFGGEALDQAYFAY-TY----DKPIDEET--- 47

Query: 63  HVDLEWFRV-IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSV 121
            VDL  F + ++ GV +    +D  I   L E WS SRL M   ++LR G+ E+      
Sbjct: 48  EVDLPSFLLSLVTGVREELPQLDSQIEEKLKEGWSLSRLIMTDRTLLRLGLYEITSFEET 107

Query: 122 PVEVIISEYVCIAHDFFYGDEPKFINAVLDK 152
           P  V I+E + IA  +      KFIN VL +
Sbjct: 108 PGRVAINEIIEIAKKYSDKTSAKFINGVLSQ 138


>gi|149177355|ref|ZP_01855960.1| transcription antitermination protein NusB [Planctomyces maris DSM
           8797]
 gi|148843880|gb|EDL58238.1| transcription antitermination protein NusB [Planctomyces maris DSM
           8797]
          Length = 171

 Score = 55.5 bits (132), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 46/150 (30%), Positives = 70/150 (46%), Gaps = 27/150 (18%)

Query: 16  RGIARLAAVQALYQIDIIG----CSTTEIISEY---ETYRFCADTELDVESVYLHVDLEW 68
           R  AR   VQ LYQID+          E+I E+   +T R  A                W
Sbjct: 4   RKQARFLVVQMLYQIDLNPDISINEIREMIEEHGRNKTARTFA----------------W 47

Query: 69  FRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIIS 128
              +  GVM+ KQ +D  I   + E W+  R+ +   +ILR G  EL+   + P  V+I 
Sbjct: 48  --ELFTGVMEFKQQLDEHIVR-VAENWTLKRMAVTDRNILRLGTYELLHTDTPPA-VVID 103

Query: 129 EYVCIAHDFFYGDEPKFINAVLDKVSRKEE 158
           E V +A +F      +F+N +LDKV ++++
Sbjct: 104 EAVELAREFGSAHSSQFVNGILDKVVQRKD 133


>gi|256821700|ref|YP_003145663.1| NusB antitermination factor [Kangiella koreensis DSM 16069]
 gi|256795239|gb|ACV25895.1| NusB antitermination factor [Kangiella koreensis DSM 16069]
          Length = 142

 Score = 55.5 bits (132), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 44/146 (30%), Positives = 69/146 (47%), Gaps = 14/146 (9%)

Query: 10  LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF 69
            K + RR  AR  A+QA+YQ  +      EI ++Y T                 VD  +F
Sbjct: 5   FKPAMRRR-AREYAMQAIYQWQMSDNPLNEIEAQYLTTMNAK-----------KVDTVYF 52

Query: 70  RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISE 129
           + +  GV+     ID  ++  L  +     +D I  +I+R    EL +   VP +V+I+E
Sbjct: 53  QELFSGVLTNLDEIDEALAPALERE--IEGIDPIERAIIRLSAFELKKRVDVPKKVVINE 110

Query: 130 YVCIAHDFFYGDEPKFINAVLDKVSR 155
            + +A  F   D  KF+N VLDK+S+
Sbjct: 111 GIELAKTFGATDGHKFVNGVLDKISK 136


>gi|189499470|ref|YP_001958940.1| NusB antitermination factor [Chlorobium phaeobacteroides BS1]
 gi|238692264|sp|B3EM81|NUSB_CHLPB RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|189494911|gb|ACE03459.1| NusB antitermination factor [Chlorobium phaeobacteroides BS1]
          Length = 168

 Score = 55.5 bits (132), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 43/154 (27%), Positives = 74/154 (48%), Gaps = 15/154 (9%)

Query: 13  SHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVI 72
           ++RR I R   +QALY I++ G           T +   D+            + +++ +
Sbjct: 3   TYRRRI-REKIIQALYTIELTGADMDSASDWLITPQIAEDSGA----------VRFYKQV 51

Query: 73  IHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVC 132
           +  + D K+ ID  I+   T  W  SR+ +I  +ILR  + EL+    +P +V I+E + 
Sbjct: 52  LQSIQDHKEEIDGYITKH-TFNWDMSRIAIIDKNILRMALAELLYFEDIPPKVSINEAIE 110

Query: 133 IAHDFFYGDE-PKFINAVLDKVSRKEEIKRSGCV 165
           IA  F   D+  KF+N +LD      ++K SG +
Sbjct: 111 IAKKFNSTDKSSKFVNGILDATY--NDLKSSGKI 142


>gi|123443366|ref|YP_001007340.1| transcription antitermination protein NusB [Yersinia enterocolitica
           subsp. enterocolitica 8081]
 gi|332160727|ref|YP_004297304.1| transcription antitermination protein NusB [Yersinia enterocolitica
           subsp. palearctica 105.5R(r)]
 gi|166215729|sp|A1JNS2|NUSB_YERE8 RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|122090327|emb|CAL13193.1| N utilization substance protein B [Yersinia enterocolitica subsp.
           enterocolitica 8081]
 gi|318604606|emb|CBY26104.1| transcription termination protein NusB [Yersinia enterocolitica
           subsp. palearctica Y11]
 gi|325664957|gb|ADZ41601.1| transcription antitermination protein NusB [Yersinia enterocolitica
           subsp. palearctica 105.5R(r)]
 gi|330863853|emb|CBX73946.1| N utilization substance protein B homolog [Yersinia enterocolitica
           W22703]
          Length = 138

 Score = 55.5 bits (132), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 43/134 (32%), Positives = 65/134 (48%), Gaps = 17/134 (12%)

Query: 23  AVQALYQIDIIGCSTTEIISEYETYRFCADTELDV--ESVYLHVDLEWFRVIIHGVMDRK 80
           AVQALY   +   S  +I          AD EL    E     VD+ +FR ++ GV    
Sbjct: 13  AVQALYSWQL---SKNDI----------ADVELQFLSEQDVKDVDIAYFRELLSGVAVNA 59

Query: 81  QHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYG 140
             +D L++  L+ +     L  +  ++LR  + EL +   VP +V I+E + +A  F   
Sbjct: 60  ASLDALMAPVLSRQ--LEELGQVERAVLRIALFELSKRDDVPYKVAINEAIELAKTFGAA 117

Query: 141 DEPKFINAVLDKVS 154
           D  KF+N VLDKV+
Sbjct: 118 DSHKFVNGVLDKVA 131


>gi|261822526|ref|YP_003260632.1| transcription antitermination protein NusB [Pectobacterium wasabiae
           WPP163]
 gi|261606539|gb|ACX89025.1| NusB antitermination factor [Pectobacterium wasabiae WPP163]
          Length = 139

 Score = 55.5 bits (132), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 40/132 (30%), Positives = 67/132 (50%), Gaps = 13/132 (9%)

Query: 23  AVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQH 82
           AVQALY   +      ++      ++F   +E DV+ V    D+ +FR ++ GV  + + 
Sbjct: 13  AVQALYSWQLSKNDIADV-----EHQFL--SEQDVKDV----DIAYFRELLAGVATQAEK 61

Query: 83  IDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDE 142
           +D L++  L+       L  +  +ILR  + EL +   VP +V I+E + +A  F   D 
Sbjct: 62  LDQLMAPFLSR--HIDELGQVEKAILRLAMFELSKREDVPYKVAINEAIELAKTFGAEDS 119

Query: 143 PKFINAVLDKVS 154
            KF+N VLDK +
Sbjct: 120 HKFVNGVLDKAA 131


>gi|293376577|ref|ZP_06622805.1| transcription antitermination factor NusB [Turicibacter sanguinis
           PC909]
 gi|325839451|ref|ZP_08166890.1| transcription antitermination factor NusB [Turicibacter sp. HGF1]
 gi|292644803|gb|EFF62885.1| transcription antitermination factor NusB [Turicibacter sanguinis
           PC909]
 gi|325490571|gb|EGC92887.1| transcription antitermination factor NusB [Turicibacter sp. HGF1]
          Length = 159

 Score = 55.5 bits (132), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 44/155 (28%), Positives = 72/155 (46%), Gaps = 16/155 (10%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTE---LDVESVYLHVDL------ 66
           R + R  AVQ LYQ+++   +  E I   E        E   L  E V  H  L      
Sbjct: 3   RHVIRQFAVQTLYQMEVGQLTREEAIENIELMVESLKEEAIELMAEEVTPHQALQMEQTF 62

Query: 67  ---EWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPV 123
              E++  +++GV+  K+ +D +I+  L   WS SRL+ +  +ILR    E+  C     
Sbjct: 63  KLDEFYFELVNGVLTHKEQLDQIINDNL-RGWSLSRLNKVDKAILRLATYEMKYCQDTAK 121

Query: 124 EVIISEYVCIAHDFF---YGDEPKFINAVLDKVSR 155
           +++I E + +  +F     G    F N VLD++S+
Sbjct: 122 KIVIDEALELTKEFSDTGDGKARSFNNKVLDQISK 156


>gi|50120067|ref|YP_049234.1| transcription antitermination protein NusB [Pectobacterium
           atrosepticum SCRI1043]
 gi|81645878|sp|Q6D847|NUSB_ERWCT RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|49610593|emb|CAG74038.1| N utilization substance protein B [Pectobacterium atrosepticum
           SCRI1043]
          Length = 139

 Score = 55.5 bits (132), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 40/132 (30%), Positives = 68/132 (51%), Gaps = 13/132 (9%)

Query: 23  AVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQH 82
           AVQALY   +      ++      ++F   +E DV+ V    D+ +FR ++ GV  + + 
Sbjct: 13  AVQALYSWQLSKNDIADV-----EHQFL--SEQDVKDV----DITYFRELLAGVATQAEK 61

Query: 83  IDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDE 142
           +D L++  L+ +     L  +  +ILR  + EL +   VP +V I+E + +A  F   D 
Sbjct: 62  LDQLMAPFLSRR--IDELGQVEKAILRLAMFELSKREDVPYKVAINEAIELAKIFGAEDS 119

Query: 143 PKFINAVLDKVS 154
            KF+N VLDK +
Sbjct: 120 HKFVNGVLDKAA 131


>gi|238765184|ref|ZP_04626116.1| N utilization substance protein B [Yersinia kristensenii ATCC
           33638]
 gi|238696618|gb|EEP89403.1| N utilization substance protein B [Yersinia kristensenii ATCC
           33638]
          Length = 138

 Score = 55.5 bits (132), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 43/134 (32%), Positives = 65/134 (48%), Gaps = 17/134 (12%)

Query: 23  AVQALYQIDIIGCSTTEIISEYETYRFCADTELDV--ESVYLHVDLEWFRVIIHGVMDRK 80
           AVQALY   +   S  +I          AD EL    E     VD+ +FR ++ GV    
Sbjct: 13  AVQALYSWQL---SKNDI----------ADVELQFLSEQDVKDVDIAYFRELLSGVAVNA 59

Query: 81  QHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYG 140
             +D L++  L+ +     L  +  ++LR  + EL +   VP +V I+E + +A  F   
Sbjct: 60  ASLDALMAPVLSRQ--LEELGQVERAVLRIALFELSKRDDVPYKVAINEAIELAKTFGAA 117

Query: 141 DEPKFINAVLDKVS 154
           D  KF+N VLDKV+
Sbjct: 118 DSHKFVNGVLDKVA 131


>gi|73748962|ref|YP_308201.1| N utilization substance protein B [Dehalococcoides sp. CBDB1]
 gi|147669729|ref|YP_001214547.1| NusB antitermination factor [Dehalococcoides sp. BAV1]
 gi|289432959|ref|YP_003462832.1| NusB antitermination factor [Dehalococcoides sp. GT]
 gi|119390765|sp|Q3ZYI9|NUSB_DEHSC RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|189035888|sp|A5FQ51|NUSB_DEHSB RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|73660678|emb|CAI83285.1| N utilization substance protein B [Dehalococcoides sp. CBDB1]
 gi|146270677|gb|ABQ17669.1| NusB antitermination factor [Dehalococcoides sp. BAV1]
 gi|288946679|gb|ADC74376.1| NusB antitermination factor [Dehalococcoides sp. GT]
          Length = 143

 Score = 55.1 bits (131), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 44/146 (30%), Positives = 71/146 (48%), Gaps = 16/146 (10%)

Query: 12  LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71
           ++  R  AR   +QALY+ D+ G +  +++    T      TE +VE +        FR 
Sbjct: 1   MTTSRRKAREIVLQALYEQDLAGHNAEDVLKRLLTEN--PQTEENVEFI--------FR- 49

Query: 72  IIHGVMDRKQHIDLLISSC--LTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISE 129
           + + V+   +H DLL  +       W   +L  I  ++LR  + E+I  + VPV+V I+E
Sbjct: 50  LTNAVV---KHKDLLDENIRQFASAWPVEQLSYIDRNVLRLAIFEIIHENDVPVKVAINE 106

Query: 130 YVCIAHDFFYGDEPKFINAVLDKVSR 155
            V +A  F      +FIN VL  VS+
Sbjct: 107 AVELAKSFGGNSSARFINGVLSSVSK 132


>gi|15615348|ref|NP_243651.1| transcription antitermination protein NusB [Bacillus halodurans
           C-125]
 gi|20139208|sp|Q9K965|NUSB_BACHD RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|10175406|dbj|BAB06504.1| transcriptional terminator [Bacillus halodurans C-125]
          Length = 134

 Score = 55.1 bits (131), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 40/143 (27%), Positives = 64/143 (44%), Gaps = 25/143 (17%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEY-----ETYRFCADTELDVESVYLHVDLEWFR 70
           R ++RL AVQALYQ+D+I  S  + I        E   F +D                  
Sbjct: 3   RRLSRLRAVQALYQMDVIDTSMEKAIESVLDEGEEASSFMSD------------------ 44

Query: 71  VIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEY 130
            ++ G +  ++ +D L +  L + W+  R+  +  +ILR  + EL     +P  V  +E 
Sbjct: 45  -LVSGTVTHQEELDRLYADHL-QGWTVDRIGNVDRAILRMALYELYYVDDIPKNVSFNEA 102

Query: 131 VCIAHDFFYGDEPKFINAVLDKV 153
           + +A  F   D  +FIN VL K 
Sbjct: 103 IELAKAFGGEDAGRFINGVLSKT 125


>gi|91225065|ref|ZP_01260287.1| transcription antitermination protein NusB [Vibrio alginolyticus
           12G01]
 gi|262395030|ref|YP_003286884.1| transcription termination protein NusB [Vibrio sp. Ex25]
 gi|269965074|ref|ZP_06179239.1| N utilization substance protein B [Vibrio alginolyticus 40B]
 gi|91190008|gb|EAS76279.1| transcription antitermination protein NusB [Vibrio alginolyticus
           12G01]
 gi|262338624|gb|ACY52419.1| transcription termination protein NusB [Vibrio sp. Ex25]
 gi|269830377|gb|EEZ84602.1| N utilization substance protein B [Vibrio alginolyticus 40B]
          Length = 155

 Score = 55.1 bits (131), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 42/148 (28%), Positives = 72/148 (48%), Gaps = 6/148 (4%)

Query: 10  LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYL---HVDL 66
           +K + RR  AR  A+QA+Y   I   +  +I  ++ +     + EL      L     D+
Sbjct: 5   VKPAARRN-ARQFALQAIYSWQITKENVAKIEEQFLSGDKYDEEELHASEPALAAPETDV 63

Query: 67  EWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVI 126
            +FR ++ GV+     +D  I   ++       LDM+  ++LR  + E+     VP +V+
Sbjct: 64  AYFRELLSGVVLSHAELDSKIRPYISR--PMQDLDMMELALLRLAMYEMTRREDVPYKVV 121

Query: 127 ISEYVCIAHDFFYGDEPKFINAVLDKVS 154
           I+E + +A  F   D  KF+N VLDK +
Sbjct: 122 INEAIELAKVFAAEDSHKFVNGVLDKAA 149


>gi|291550246|emb|CBL26508.1| transcription antitermination factor NusB [Ruminococcus torques
           L2-14]
          Length = 139

 Score = 55.1 bits (131), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 31/91 (34%), Positives = 50/91 (54%), Gaps = 1/91 (1%)

Query: 65  DLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVE 124
           D E+ +     V+++ + ID LI++   + W  +R++ +  SILR  V E+     VPV 
Sbjct: 43  DKEYIKRKYAAVLEKTEEIDELINAN-AKGWKTTRMNKVDLSILRLAVYEMKWDDEVPVG 101

Query: 125 VIISEYVCIAHDFFYGDEPKFINAVLDKVSR 155
           V I+E V +   F   + P FIN VL K++R
Sbjct: 102 VAINEAVELTKTFSSDEAPSFINGVLGKIAR 132


>gi|134098647|ref|YP_001104308.1| NusB antitermination factor [Saccharopolyspora erythraea NRRL 2338]
 gi|291003667|ref|ZP_06561640.1| NusB antitermination factor [Saccharopolyspora erythraea NRRL 2338]
 gi|166918811|sp|A4FBF8|NUSB_SACEN RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|133911270|emb|CAM01383.1| NusB antitermination factor [Saccharopolyspora erythraea NRRL 2338]
          Length = 148

 Score = 55.1 bits (131), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 41/141 (29%), Positives = 64/141 (45%), Gaps = 16/141 (11%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           R  AR  AV  LY+ D+ G     ++S              V S  L    E+   ++ G
Sbjct: 4   RNKARKRAVDVLYEADLRGEDAVTLLSGR------------VGSPDLPPVNEYTVTLVEG 51

Query: 76  VMDRKQHID-LLISSCLTEKWSFSRLDMILCSILRAGVLELI-ECHSVPVEVIISEYVCI 133
           V   +Q ID LL+     E W+ +R+  +  ++LR G+ EL+     VP  V I E V +
Sbjct: 52  VTANRQRIDELLVEHA--EGWTLARMPAVDRAVLRLGLYELLWRSDDVPPAVAIDEAVEL 109

Query: 134 AHDFFYGDEPKFINAVLDKVS 154
                  D P+F+N VL +++
Sbjct: 110 VKALSTDDSPRFVNGVLGRIA 130


>gi|253687422|ref|YP_003016612.1| NusB antitermination factor [Pectobacterium carotovorum subsp.
           carotovorum PC1]
 gi|259514866|sp|C6DB34|NUSB_PECCP RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|251754000|gb|ACT12076.1| NusB antitermination factor [Pectobacterium carotovorum subsp.
           carotovorum PC1]
          Length = 139

 Score = 55.1 bits (131), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 40/132 (30%), Positives = 68/132 (51%), Gaps = 13/132 (9%)

Query: 23  AVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQH 82
           AVQALY   +      ++      ++F   +E DV+ V    D+ +FR ++ GV  + + 
Sbjct: 13  AVQALYSWQLSKNDIADV-----EHQFL--SEQDVKDV----DITYFRELLAGVATQAEK 61

Query: 83  IDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDE 142
           +D L++  L+ +     L  +  +ILR  + EL +   VP +V I+E + +A  F   D 
Sbjct: 62  LDQLMAPFLSRQ--IEELGQVEKAILRLAMFELSKREDVPYKVAINEAIELAKVFGAEDS 119

Query: 143 PKFINAVLDKVS 154
            KF+N VLDK +
Sbjct: 120 HKFVNGVLDKAA 131


>gi|157150386|ref|YP_001451127.1| transcription antitermination protein NusB [Streptococcus gordonii
           str. Challis substr. CH1]
 gi|157075180|gb|ABV09863.1| transcription antitermination factor NusB [Streptococcus gordonii
           str. Challis substr. CH1]
          Length = 137

 Score = 55.1 bits (131), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 28/86 (32%), Positives = 46/86 (53%)

Query: 72  IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
           +++GVM  K  +D  I+  L   W+  RL ++  +ILR G+ EL+E    P  V ++E +
Sbjct: 52  LVNGVMQSKSELDDKITQYLKSGWTLDRLTLVEKNILRLGLYELLEYDETPQLVAVNEAI 111

Query: 132 CIAHDFFYGDEPKFINAVLDKVSRKE 157
            +A  F      KFIN +L +   +E
Sbjct: 112 ELAKKFSDEKSSKFINGILSQFVTEE 137


>gi|206577191|ref|YP_002240116.1| transcription antitermination factor NusB [Klebsiella pneumoniae
           342]
 gi|288936865|ref|YP_003440924.1| NusB antitermination factor [Klebsiella variicola At-22]
 gi|290510079|ref|ZP_06549449.1| transcription antitermination factor NusB [Klebsiella sp. 1_1_55]
 gi|238055476|sp|B5Y0X5|NUSB_KLEP3 RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|206566249|gb|ACI08025.1| transcription antitermination factor NusB [Klebsiella pneumoniae
           342]
 gi|288891574|gb|ADC59892.1| NusB antitermination factor [Klebsiella variicola At-22]
 gi|289776795|gb|EFD84793.1| transcription antitermination factor NusB [Klebsiella sp. 1_1_55]
          Length = 139

 Score = 55.1 bits (131), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 41/132 (31%), Positives = 66/132 (50%), Gaps = 13/132 (9%)

Query: 23  AVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQH 82
           AVQALY   +      ++      Y+F A  E DV+ V    D+ +FR ++ GV     +
Sbjct: 13  AVQALYSWQLSHNDIADV-----EYQFLA--EQDVKDV----DVLYFRELLSGVATNSAY 61

Query: 83  IDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDE 142
           +D L+   L+ +     L  +  ++LR  + EL +   VP +V I+E + +A  F   D 
Sbjct: 62  LDGLMKPYLSRQ--LEELGQVEKAVLRIALFELSKRDDVPYKVAINEAIELAKTFGAEDS 119

Query: 143 PKFINAVLDKVS 154
            KF+N VLDK +
Sbjct: 120 HKFVNGVLDKAA 131


>gi|190572778|ref|YP_001970623.1| transcription antitermination protein NusB [Stenotrophomonas
           maltophilia K279a]
 gi|229620370|sp|B2FNL4|NUSB_STRMK RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|190010700|emb|CAQ44309.1| putative N utilization substance protein B (protein nusb)
           [Stenotrophomonas maltophilia K279a]
          Length = 159

 Score = 55.1 bits (131), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 39/139 (28%), Positives = 64/139 (46%), Gaps = 13/139 (9%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           R  AR  AVQA+Y   I G +   +I++     F  +   ++       DL +F  ++HG
Sbjct: 24  RSRARRRAVQAIYAWQISGGNAQSLIAQ-----FAHEQAREI------ADLAYFEALLHG 72

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
           V+D ++ ID  +   L        +D I  ++LR    EL     VP  V+I+E +  A 
Sbjct: 73  VLDNRRDIDEALGPYLDR--GIEEVDAIERAVLRLAGYELRYRLDVPYRVVINEAIESAK 130

Query: 136 DFFYGDEPKFINAVLDKVS 154
            F       ++N VLD+ +
Sbjct: 131 RFGSEHGHTYVNGVLDRAA 149


>gi|167470223|ref|ZP_02334927.1| transcription antitermination factor NusB [Yersinia pestis FV-1]
          Length = 137

 Score = 55.1 bits (131), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 45/138 (32%), Positives = 67/138 (48%), Gaps = 17/138 (12%)

Query: 19  ARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDV--ESVYLHVDLEWFRVIIHGV 76
           AR  AVQALY   +   S  +I          AD EL    E     VD+ +FR ++ GV
Sbjct: 8   ARECAVQALYSWQL---SKNDI----------ADVELQFLSEQDVKDVDIAYFRELLSGV 54

Query: 77  MDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHD 136
                 +D L++  L+ +     L  +  ++LR  + EL +   VP +V I+E + +A  
Sbjct: 55  AVNAASLDALMAPFLSRQ--LEELGQVERAVLRIALFELSKRDDVPYKVAINEAIELAKT 112

Query: 137 FFYGDEPKFINAVLDKVS 154
           F   D  KF+N VLDKV+
Sbjct: 113 FGAEDSHKFVNGVLDKVA 130


>gi|227113444|ref|ZP_03827100.1| transcription antitermination protein NusB [Pectobacterium
           carotovorum subsp. brasiliensis PBR1692]
          Length = 139

 Score = 55.1 bits (131), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 40/132 (30%), Positives = 68/132 (51%), Gaps = 13/132 (9%)

Query: 23  AVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQH 82
           AVQALY   +      ++      ++F   +E DV+ V    D+ +FR ++ GV  + + 
Sbjct: 13  AVQALYSWQLSKNDIADV-----EHQFL--SEQDVKDV----DITYFRELLAGVATQAEK 61

Query: 83  IDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDE 142
           +D L++  L+ +     L  +  +ILR  + EL +   VP +V I+E + +A  F   D 
Sbjct: 62  LDQLMAPFLSRQ--IEELGQVEKAILRLAMFELSKREDVPYKVAINEAIELAKIFGAEDS 119

Query: 143 PKFINAVLDKVS 154
            KF+N VLDK +
Sbjct: 120 HKFVNGVLDKAA 131


>gi|152968941|ref|YP_001334050.1| transcription antitermination protein NusB [Klebsiella pneumoniae
           subsp. pneumoniae MGH 78578]
 gi|238893353|ref|YP_002918087.1| transcription antitermination protein NusB [Klebsiella pneumoniae
           NTUH-K2044]
 gi|330006911|ref|ZP_08305783.1| transcription antitermination factor NusB [Klebsiella sp. MS 92-3]
 gi|166215693|sp|A6T5E9|NUSB_KLEP7 RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|150953790|gb|ABR75820.1| transcription antitermination protein NusB [Klebsiella pneumoniae
           subsp. pneumoniae MGH 78578]
 gi|238545669|dbj|BAH62020.1| transcription antitermination protein [Klebsiella pneumoniae subsp.
           pneumoniae NTUH-K2044]
 gi|328535665|gb|EGF62114.1| transcription antitermination factor NusB [Klebsiella sp. MS 92-3]
          Length = 139

 Score = 55.1 bits (131), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 41/132 (31%), Positives = 66/132 (50%), Gaps = 13/132 (9%)

Query: 23  AVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQH 82
           AVQALY   +      ++      Y+F A  E DV+ V    D+ +FR ++ GV     +
Sbjct: 13  AVQALYSWQLSHNDIADV-----EYQFLA--EQDVKDV----DVLYFRELLSGVATNSAY 61

Query: 83  IDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDE 142
           +D L+   L+ +     L  +  ++LR  + EL +   VP +V I+E + +A  F   D 
Sbjct: 62  LDGLMKPYLSRQ--LEELGQVEKAVLRIALFELSKRDDVPYKVAINEAIELAKTFGAEDS 119

Query: 143 PKFINAVLDKVS 154
            KF+N VLDK +
Sbjct: 120 HKFVNGVLDKAA 131


>gi|295396131|ref|ZP_06806314.1| transcription antitermination factor NusB [Brevibacterium
           mcbrellneri ATCC 49030]
 gi|294971072|gb|EFG46964.1| transcription antitermination factor NusB [Brevibacterium
           mcbrellneri ATCC 49030]
          Length = 134

 Score = 55.1 bits (131), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 28/86 (32%), Positives = 49/86 (56%), Gaps = 1/86 (1%)

Query: 70  RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISE 129
           R I+ GV+  +  +D LIS+     W+  R+  +  ++LR G+ E++    V   V I E
Sbjct: 45  REIVDGVVTHRAQLDELISTY-AHGWTLERMPRVDRAVLRIGLWEILYNDEVDDPVAIDE 103

Query: 130 YVCIAHDFFYGDEPKFINAVLDKVSR 155
            V +A ++   D P F+NA+LD++S+
Sbjct: 104 AVTLAKEYSTDDSPAFVNALLDRISK 129


>gi|197301786|ref|ZP_03166856.1| hypothetical protein RUMLAC_00512 [Ruminococcus lactaris ATCC
           29176]
 gi|197299226|gb|EDY33756.1| hypothetical protein RUMLAC_00512 [Ruminococcus lactaris ATCC
           29176]
          Length = 140

 Score = 55.1 bits (131), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 30/73 (41%), Positives = 42/73 (57%), Gaps = 1/73 (1%)

Query: 83  IDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDE 142
           ID LI+    + W  +R++ +  +ILR  V E+     VPV V I+E V +A  F  GD 
Sbjct: 61  IDELINQY-AKGWKTTRMNKVDLAILRLAVYEMKWDEEVPVGVAINEAVELAKRFSGGDS 119

Query: 143 PKFINAVLDKVSR 155
           P FIN VL K++R
Sbjct: 120 PSFINGVLGKIAR 132


>gi|16803399|ref|NP_464884.1| transcription antitermination protein NusB [Listeria monocytogenes
           EGD-e]
 gi|46907585|ref|YP_013974.1| transcription antitermination protein NusB [Listeria monocytogenes
           serotype 4b str. F2365]
 gi|47093746|ref|ZP_00231496.1| N utilization substance protein B [Listeria monocytogenes str. 4b
           H7858]
 gi|47095942|ref|ZP_00233545.1| N utilization substance protein B [Listeria monocytogenes str. 1/2a
           F6854]
 gi|224499938|ref|ZP_03668287.1| transcription antitermination protein NusB [Listeria monocytogenes
           Finland 1988]
 gi|224501698|ref|ZP_03670005.1| transcription antitermination protein NusB [Listeria monocytogenes
           FSL R2-561]
 gi|226223960|ref|YP_002758067.1| transcription termination protein (NusB) [Listeria monocytogenes
           Clip81459]
 gi|254824582|ref|ZP_05229583.1| transcription antitermination protein NusB [Listeria monocytogenes
           FSL J1-194]
 gi|254827620|ref|ZP_05232307.1| transcription antitermination protein NusB [Listeria monocytogenes
           FSL N3-165]
 gi|254852593|ref|ZP_05241941.1| transcription antitermination protein NusB [Listeria monocytogenes
           FSL R2-503]
 gi|254898476|ref|ZP_05258400.1| transcription antitermination protein NusB [Listeria monocytogenes
           J0161]
 gi|254912033|ref|ZP_05262045.1| transcription antitermination protein NusB [Listeria monocytogenes
           J2818]
 gi|254932326|ref|ZP_05265685.1| N utilization substance protein B [Listeria monocytogenes HPB2262]
 gi|254936360|ref|ZP_05268057.1| transcription antitermination protein NusB [Listeria monocytogenes
           F6900]
 gi|254994167|ref|ZP_05276357.1| transcription antitermination protein NusB [Listeria monocytogenes
           FSL J2-064]
 gi|255018100|ref|ZP_05290226.1| transcription antitermination protein NusB [Listeria monocytogenes
           FSL F2-515]
 gi|255029814|ref|ZP_05301765.1| transcription antitermination protein NusB [Listeria monocytogenes
           LO28]
 gi|255520789|ref|ZP_05388026.1| transcription antitermination protein NusB [Listeria monocytogenes
           FSL J1-175]
 gi|284801744|ref|YP_003413609.1| transcription antitermination protein NusB [Listeria monocytogenes
           08-5578]
 gi|284994886|ref|YP_003416654.1| transcription antitermination protein NusB [Listeria monocytogenes
           08-5923]
 gi|300765401|ref|ZP_07075383.1| hypothetical protein LMHG_12558 [Listeria monocytogenes FSL N1-017]
 gi|22095949|sp|Q8Y7C6|NUSB_LISMO RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|67460884|sp|Q71ZW3|NUSB_LISMF RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|259514854|sp|C1L2R5|NUSB_LISMC RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|16410775|emb|CAC99437.1| lmo1359 [Listeria monocytogenes EGD-e]
 gi|46880853|gb|AAT04151.1| N utilization substance protein B [Listeria monocytogenes serotype
           4b str. F2365]
 gi|47015688|gb|EAL06618.1| N utilization substance protein B [Listeria monocytogenes str. 1/2a
           F6854]
 gi|47017867|gb|EAL08650.1| N utilization substance protein B [Listeria monocytogenes str. 4b
           H7858]
 gi|225876422|emb|CAS05131.1| Putative transcription termination protein (NusB) [Listeria
           monocytogenes serotype 4b str. CLIP 80459]
 gi|258599998|gb|EEW13323.1| transcription antitermination protein NusB [Listeria monocytogenes
           FSL N3-165]
 gi|258605906|gb|EEW18514.1| transcription antitermination protein NusB [Listeria monocytogenes
           FSL R2-503]
 gi|258608951|gb|EEW21559.1| transcription antitermination protein NusB [Listeria monocytogenes
           F6900]
 gi|284057306|gb|ADB68247.1| transcription antitermination protein NusB [Listeria monocytogenes
           08-5578]
 gi|284060353|gb|ADB71292.1| transcription antitermination protein NusB [Listeria monocytogenes
           08-5923]
 gi|293583882|gb|EFF95914.1| N utilization substance protein B [Listeria monocytogenes HPB2262]
 gi|293589999|gb|EFF98333.1| transcription antitermination protein NusB [Listeria monocytogenes
           J2818]
 gi|293593820|gb|EFG01581.1| transcription antitermination protein NusB [Listeria monocytogenes
           FSL J1-194]
 gi|300513838|gb|EFK40903.1| hypothetical protein LMHG_12558 [Listeria monocytogenes FSL N1-017]
 gi|328467497|gb|EGF38566.1| transcription antitermination protein NusB [Listeria monocytogenes
           1816]
 gi|328475073|gb|EGF45861.1| transcription antitermination protein NusB [Listeria monocytogenes
           220]
 gi|332311800|gb|EGJ24895.1| N pathway substance protein [Listeria monocytogenes str. Scott A]
          Length = 128

 Score = 55.1 bits (131), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 44/142 (30%), Positives = 66/142 (46%), Gaps = 21/142 (14%)

Query: 15  RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74
           +R  AR  A+QAL+QI++   S  + I      +   + E D          ++   ++ 
Sbjct: 2   KRREAREKALQALFQIELNEMSLDQAI------KNIMEDEQD----------DYMEKLVE 45

Query: 75  GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134
           GVM  K  ID +I   L + W   RL  +  S+LR  V E+     VP  V ++E + IA
Sbjct: 46  GVMANKAEIDAIIEPNL-DNWRMDRLSKVDLSLLRLSVYEIKYLDDVPNRVSLNESIEIA 104

Query: 135 HDFFYGDEP--KFINAVLDKVS 154
               Y DE   KFIN VL  ++
Sbjct: 105 K--IYSDEKSSKFINGVLANIA 124


>gi|322386860|ref|ZP_08060484.1| N utilization substance protein B [Streptococcus cristatus ATCC
           51100]
 gi|321269142|gb|EFX52078.1| N utilization substance protein B [Streptococcus cristatus ATCC
           51100]
          Length = 145

 Score = 55.1 bits (131), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 41/145 (28%), Positives = 70/145 (48%), Gaps = 10/145 (6%)

Query: 9   DLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEW 68
           D+ L  RR + R  A QAL  ++  G +        E  RF    + D E     V++  
Sbjct: 3   DVLLESRREL-RQRAFQALMSLEYEGDAI-------EACRFAYTYDKDEEETDAEVNIPA 54

Query: 69  FRV-IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVII 127
           F + ++ GV+  K+ +D  I+  L   W+  RL ++  +ILR G+ E+ E  + P  V +
Sbjct: 55  FLLNLVTGVLQSKEELDKKIAQHLKAGWTVERLTLVEKNILRLGIFEMTEFDT-PERVAV 113

Query: 128 SEYVCIAHDFFYGDEPKFINAVLDK 152
           +E + ++  F      KFIN +L +
Sbjct: 114 NEAIELSKQFSDEKSSKFINGILSQ 138


>gi|300087424|ref|YP_003757946.1| NusB antitermination factor [Dehalogenimonas lykanthroporepellens
           BL-DC-9]
 gi|299527157|gb|ADJ25625.1| NusB antitermination factor [Dehalogenimonas lykanthroporepellens
           BL-DC-9]
          Length = 136

 Score = 55.1 bits (131), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 41/140 (29%), Positives = 71/140 (50%), Gaps = 12/140 (8%)

Query: 15  RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74
           RR  AR+ A+++LY++D+ G    ++I   E     A+   ++E++         + I+ 
Sbjct: 3   RRHQARIVALKSLYEVDLTGHDPDKVI---ERRLLFAELGPELETLA--------QSILA 51

Query: 75  GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134
           G +  ++  D LI   L   +   +L  +  +ILR  + E+I  + VPV V I+E V +A
Sbjct: 52  GTLAAREEADSLIYR-LAPTYPVDQLAPVDRNILRLAIYEIIHDNKVPVRVAINEAVELA 110

Query: 135 HDFFYGDEPKFINAVLDKVS 154
            +F      KFIN VL  V+
Sbjct: 111 KEFGSDGSAKFINGVLSSVA 130


>gi|38233925|ref|NP_939692.1| transcription antitermination protein NusB [Corynebacterium
           diphtheriae NCTC 13129]
 gi|81564845|sp|Q6NH08|NUSB_CORDI RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|38200186|emb|CAE49867.1| Putative transcription termination related protein [Corynebacterium
           diphtheriae]
          Length = 182

 Score = 55.1 bits (131), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 42/168 (25%), Positives = 76/168 (45%), Gaps = 7/168 (4%)

Query: 1   MTIQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESV 60
           M  Q+ +   K    R  AR  AV  L++ ++       I+ +         T+++    
Sbjct: 1   MKSQETRSSWKRRGSRYKARRRAVDILFEAEMRDIDPVAIVEDRVVLSRLNGTDVNQVPS 60

Query: 61  YLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHS 120
           Y        + I+ G       +D LI++ L E WS  R+  +  +ILR  V ELI    
Sbjct: 61  YT-------KEIVSGAAMELDRLDELIAAHLAEDWSLERIMTVDRAILRVSVWELIFNPD 113

Query: 121 VPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRSGCVSAI 168
           VP+   I E V +A ++     P +++A+LD +++  +  R+G V+ +
Sbjct: 114 VPLATAIIEGVELASEYSTDVSPAYVHALLDSIAKNIDEYRAGSVTPV 161


>gi|94986598|ref|YP_594531.1| transcription termination factor [Lawsonia intracellularis
           PHE/MN1-00]
 gi|119390780|sp|Q1MS16|NUSB_LAWIP RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|94730847|emb|CAJ54209.1| transcription termination factor [Lawsonia intracellularis
           PHE/MN1-00]
          Length = 161

 Score = 55.1 bits (131), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 45/150 (30%), Positives = 66/150 (44%), Gaps = 20/150 (13%)

Query: 14  HRRGIARLAAVQALYQIDIIGCSTTEIISE--------YETYRFCADTELDVESVYLHVD 65
           H R I R  A Q LY +     +T E + E         E       TELD +     + 
Sbjct: 7   HSRRIDRTKAFQVLYSLHFTQINTIETLKEIFLNLPNPLEERNTGIITELDTQ-----IS 61

Query: 66  LEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEV 125
             W   ++ GV      +D +IS   ++ W   RL  I  ++LR    E+  C  VP +V
Sbjct: 62  FSW--QLVEGVWRNVTRLDKIISQ-FSQNWRVDRLGKIELTLLRIATFEMYYCPDVPPKV 118

Query: 126 IISEYVCIAHDFFYGDEP--KFINAVLDKV 153
            ++E + +A  F  GDE   KFIN +LD +
Sbjct: 119 SLNEALELATCF--GDEKARKFINGILDAI 146


>gi|284006399|emb|CBA71635.1| N utilization substance protein B [Arsenophonus nasoniae]
          Length = 137

 Score = 55.1 bits (131), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 42/138 (30%), Positives = 69/138 (50%), Gaps = 13/138 (9%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           R  AR  AVQA+Y   + G S  ++  E+ T       E D+     +VD+ +FR +++G
Sbjct: 6   RHRARECAVQAIYSWQLSGNSIADVEEEFLT-------EQDMS----NVDVTYFRELLNG 54

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
           V      +D  ++  L+ +     L  +  ++LR  + EL   + VP +V I+E + +A 
Sbjct: 55  VSTHVSELDKKMAPYLSRQ--LEELGQVEKAVLRLAMFELCYRNDVPYKVAINEAIELAK 112

Query: 136 DFFYGDEPKFINAVLDKV 153
            F   +  KFIN  LDKV
Sbjct: 113 VFGAEESHKFINGALDKV 130


>gi|197119391|ref|YP_002139818.1| transcription antitermination factor NusB [Geobacter bemidjiensis
           Bem]
 gi|238690857|sp|B5E853|NUSB_GEOBB RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|197088751|gb|ACH40022.1| transcription antitermination factor NusB [Geobacter bemidjiensis
           Bem]
          Length = 145

 Score = 55.1 bits (131), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 40/143 (27%), Positives = 71/143 (49%), Gaps = 8/143 (5%)

Query: 13  SHRRGIARLAAVQALYQIDII-GCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71
           + R G  R  A+QALY  D++   + T +    E++    +  L V S       E    
Sbjct: 3   TRREG--RELALQALYSKDLVLQDANTTLKRITESFSEGEEPTLSVNSKAYAFASE---- 56

Query: 72  IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
           +++GV+   Q ID  I+   ++ WS +R+  +  +ILR  V EL+    +P  V ++E +
Sbjct: 57  LVNGVVSNLQAIDSRIAEK-SKHWSMARMARVDLNILRLAVFELLYRPDIPKNVTMNEAI 115

Query: 132 CIAHDFFYGDEPKFINAVLDKVS 154
            +A  F   D   F+N +LD+++
Sbjct: 116 EVAKKFGADDSASFVNGILDEIA 138


>gi|116872790|ref|YP_849571.1| transcription antitermination protein NusB [Listeria welshimeri
           serovar 6b str. SLCC5334]
 gi|123466249|sp|A0AIG0|NUSB_LISW6 RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|116741668|emb|CAK20792.1| N utilization substance protein B/transcription termination factor
           [Listeria welshimeri serovar 6b str. SLCC5334]
          Length = 128

 Score = 55.1 bits (131), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 44/142 (30%), Positives = 66/142 (46%), Gaps = 21/142 (14%)

Query: 15  RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74
           +R  AR  A+QAL+QI++   S  + I      +   + E D          ++   ++ 
Sbjct: 2   KRREAREKALQALFQIELNEMSLDQAI------KNIMEDEQD----------DYMEKLVE 45

Query: 75  GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134
           GVM  K  ID +I   L + W   RL  +  S+LR  V E+     VP  V ++E + IA
Sbjct: 46  GVMANKAEIDAIIEPNL-DNWRMDRLSKVDLSLLRLSVYEINYLDDVPNRVSLNESIEIA 104

Query: 135 HDFFYGDEP--KFINAVLDKVS 154
               Y DE   KFIN VL  ++
Sbjct: 105 K--IYSDEKSSKFINGVLANIA 124


>gi|332799350|ref|YP_004460849.1| NusB antitermination factor [Tepidanaerobacter sp. Re1]
 gi|332697085|gb|AEE91542.1| NusB antitermination factor [Tepidanaerobacter sp. Re1]
          Length = 135

 Score = 54.7 bits (130), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 48/141 (34%), Positives = 71/141 (50%), Gaps = 17/141 (12%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           R IAR  A + L+ ID+ G +T E  SE     F  D   + +S  L+         + G
Sbjct: 3   RKIAREQAFKILFAIDV-GNNTVEEASEI-VIEFLKDE--NQKSFILNE--------VRG 50

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
           V+    +ID++I+   ++ WS  R+     +ILR  V ELI    +P+ V I+E V IA 
Sbjct: 51  VLKNLSNIDIIINKY-SDDWSIDRMAATDRNILRLAVYELIYSQDIPISVSINEAVEIAK 109

Query: 136 DFFYGDEP--KFINAVLDKVS 154
              YGDE   KFIN +L  ++
Sbjct: 110 K--YGDEHSYKFINGLLGSIA 128


>gi|289434640|ref|YP_003464512.1| transcription antitermination factor [Listeria seeligeri serovar
           1/2b str. SLCC3954]
 gi|315303024|ref|ZP_07873735.1| transcription antitermination factor NusB [Listeria ivanovii FSL
           F6-596]
 gi|289170884|emb|CBH27426.1| transcription antitermination factor [Listeria seeligeri serovar
           1/2b str. SLCC3954]
 gi|313628606|gb|EFR97028.1| transcription antitermination factor NusB [Listeria ivanovii FSL
           F6-596]
 gi|313633359|gb|EFS00202.1| transcription antitermination factor NusB [Listeria seeligeri FSL
           N1-067]
 gi|313638045|gb|EFS03323.1| transcription antitermination factor NusB [Listeria seeligeri FSL
           S4-171]
          Length = 128

 Score = 54.7 bits (130), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 44/142 (30%), Positives = 66/142 (46%), Gaps = 21/142 (14%)

Query: 15  RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74
           +R  AR  A+QAL+QI++   S  + I      +   + E D          ++   ++ 
Sbjct: 2   KRREAREKALQALFQIELNEMSLDQAI------KNIMEDEQD----------DYMEKLVE 45

Query: 75  GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134
           GVM  K  ID +I   L + W   RL  +  S+LR  V E+     VP  V ++E + IA
Sbjct: 46  GVMANKAEIDAIIEPNL-DNWRMDRLSKVDLSLLRLSVYEINYLSDVPNRVSLNESIEIA 104

Query: 135 HDFFYGDEP--KFINAVLDKVS 154
               Y DE   KFIN VL  ++
Sbjct: 105 K--IYSDEKSSKFINGVLANIA 124


>gi|54293711|ref|YP_126126.1| hypothetical protein lpl0764 [Legionella pneumophila str. Lens]
 gi|54296754|ref|YP_123123.1| hypothetical protein lpp0793 [Legionella pneumophila str. Paris]
 gi|148360619|ref|YP_001251826.1| transcription termination factor NusB [Legionella pneumophila str.
           Corby]
 gi|296106315|ref|YP_003618015.1| N utilization substance protein B [Legionella pneumophila 2300/99
           Alcoy]
 gi|81601476|sp|Q5WYH2|NUSB_LEGPL RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|81601958|sp|Q5X720|NUSB_LEGPA RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|166215694|sp|A5IGI0|NUSB_LEGPC RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|53750539|emb|CAH11941.1| hypothetical protein lpp0793 [Legionella pneumophila str. Paris]
 gi|53753543|emb|CAH14998.1| hypothetical protein lpl0764 [Legionella pneumophila str. Lens]
 gi|148282392|gb|ABQ56480.1| transcription termination factor NusB [Legionella pneumophila str.
           Corby]
 gi|295648216|gb|ADG24063.1| N utilization substance protein B [Legionella pneumophila 2300/99
           Alcoy]
 gi|307609522|emb|CBW99020.1| hypothetical protein LPW_08051 [Legionella pneumophila 130b]
          Length = 147

 Score = 54.7 bits (130), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 39/139 (28%), Positives = 71/139 (51%), Gaps = 15/139 (10%)

Query: 19  ARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMD 78
           AR  A+QALYQ  + G    EI +++ T        +D       VD E+F  +++G+  
Sbjct: 12  ARKFALQALYQWLMSGTDLHEIEAQFRTI-----NNMD------KVDGEYFCRLLYGI-- 58

Query: 79  RKQHIDLLISSCLTE-KWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDF 137
              H++ L +S L       + L+ I  ++LR G  EL  C  +P +VI+ E V +  +F
Sbjct: 59  -PTHVEALEASLLPYLDREINALNPIELTVLRIGSFELFHCPEIPYKVILDESVSLTKEF 117

Query: 138 FYGDEPKFINAVLDKVSRK 156
              +  +++N VL+ ++++
Sbjct: 118 GSQEGYRYVNGVLNNLAKQ 136


>gi|169333804|ref|ZP_02860997.1| hypothetical protein ANASTE_00190 [Anaerofustis stercorihominis DSM
           17244]
 gi|169259369|gb|EDS73335.1| hypothetical protein ANASTE_00190 [Anaerofustis stercorihominis DSM
           17244]
          Length = 132

 Score = 54.7 bits (130), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 28/90 (31%), Positives = 49/90 (54%), Gaps = 1/90 (1%)

Query: 67  EWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVI 126
           E+ +  + G++D  + ID  I   L + W F RL   + ++LR GV E++    +P  V 
Sbjct: 42  EYAKKTVKGILDNLEEIDDTIKDNL-KGWKFERLSTHVIAVLRLGVFEIMYNEDIPPLVG 100

Query: 127 ISEYVCIAHDFFYGDEPKFINAVLDKVSRK 156
           ++E V +AH +    E  F+N +L+ V +K
Sbjct: 101 LNEAVSLAHTYSDEKEATFVNGLLNSVYKK 130


>gi|328472533|gb|EGF43396.1| transcription antitermination protein NusB [Vibrio parahaemolyticus
           10329]
          Length = 151

 Score = 54.7 bits (130), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 42/148 (28%), Positives = 71/148 (47%), Gaps = 6/148 (4%)

Query: 10  LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYL---HVDL 66
           +K + RR  AR  A+QA+Y   I   +   I  ++ +     + EL      L     D+
Sbjct: 1   MKPAARRN-ARQFALQAIYSWQITKENVATIEEQFLSGDKYDEEELRASEPALAAPETDV 59

Query: 67  EWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVI 126
            +FR ++ GV+     +D  I   ++       LDM+  ++LR  + E+     VP +V+
Sbjct: 60  AYFRELLSGVVLSHAELDSKIRPYVSR--PMQDLDMMELALLRLAMYEMTRREDVPYKVV 117

Query: 127 ISEYVCIAHDFFYGDEPKFINAVLDKVS 154
           I+E + +A  F   D  KF+N VLDK +
Sbjct: 118 INEAIELAKVFAAEDSHKFVNGVLDKAA 145


>gi|22537833|ref|NP_688684.1| transcription antitermination protein NusB [Streptococcus
           agalactiae 2603V/R]
 gi|25011777|ref|NP_736172.1| transcription antitermination protein NusB [Streptococcus
           agalactiae NEM316]
 gi|76787394|ref|YP_330307.1| transcription antitermination protein NusB [Streptococcus
           agalactiae A909]
 gi|76798712|ref|ZP_00780933.1| transcription antitermination factor NusB [Streptococcus agalactiae
           18RS21]
 gi|77406598|ref|ZP_00783645.1| transcription antitermination factor NusB [Streptococcus agalactiae
           H36B]
 gi|77409287|ref|ZP_00785993.1| transcription antitermination factor NusB [Streptococcus agalactiae
           COH1]
 gi|77412442|ref|ZP_00788747.1| transcription antitermination factor NusB [Streptococcus agalactiae
           CJB111]
 gi|77413939|ref|ZP_00790114.1| transcription antitermination factor NusB [Streptococcus agalactiae
           515]
 gi|54037925|sp|P65581|NUSB_STRA5 RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|54041675|sp|P65580|NUSB_STRA3 RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|119390832|sp|Q3JZJ6|NUSB_STRA1 RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|22534728|gb|AAN00557.1|AE014269_1 N utilization substance protein B [Streptococcus agalactiae
           2603V/R]
 gi|24413317|emb|CAD47396.1| Unknown [Streptococcus agalactiae NEM316]
 gi|76562451|gb|ABA45035.1| transcription antitermination factor NusB [Streptococcus agalactiae
           A909]
 gi|76585937|gb|EAO62474.1| transcription antitermination factor NusB [Streptococcus agalactiae
           18RS21]
 gi|77160024|gb|EAO71160.1| transcription antitermination factor NusB [Streptococcus agalactiae
           515]
 gi|77161506|gb|EAO72512.1| transcription antitermination factor NusB [Streptococcus agalactiae
           CJB111]
 gi|77172119|gb|EAO75282.1| transcription antitermination factor NusB [Streptococcus agalactiae
           COH1]
 gi|77174791|gb|EAO77613.1| transcription antitermination factor NusB [Streptococcus agalactiae
           H36B]
 gi|319745636|gb|EFV97936.1| transcription antitermination factor NusB [Streptococcus agalactiae
           ATCC 13813]
          Length = 144

 Score = 54.7 bits (130), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 31/83 (37%), Positives = 47/83 (56%), Gaps = 4/83 (4%)

Query: 72  IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
           +++GV+D K  +D LISS L   WS  RL ++  S+LR G+ E+      P  V ++E +
Sbjct: 58  LVNGVVDHKDELDTLISSHLKSGWSLERLTLVDKSLLRLGLYEIKYFDETPDRVALNEII 117

Query: 132 CIAHDFFYGDE--PKFINAVLDK 152
            IA    Y DE   KF+N +L +
Sbjct: 118 EIAKK--YSDETSAKFVNGLLSQ 138


>gi|257095841|ref|YP_003169482.1| NusB antitermination factor [Candidatus Accumulibacter phosphatis
           clade IIA str. UW-1]
 gi|257048365|gb|ACV37553.1| NusB antitermination factor [Candidatus Accumulibacter phosphatis
           clade IIA str. UW-1]
          Length = 164

 Score = 54.7 bits (130), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 42/144 (29%), Positives = 65/144 (45%), Gaps = 14/144 (9%)

Query: 13  SHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVI 72
           S RR  AR  A+QALYQ  + G     I           +  L     +   D E+F  +
Sbjct: 18  SPRR-RAREFALQALYQWQLSGNDEAAI-----------EAHLGDSEGFDKADREFFAGL 65

Query: 73  IHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVC 132
           + GV+ +++ +   + + L     F  L  +   +L AG  EL      P  VII+E V 
Sbjct: 66  LRGVLAQRRTLQEQLQAFLDR--PFGELSPVEACVLLAGAFELNNHPQTPYGVIINESVE 123

Query: 133 IAHDFFYGDEPKFINAVLDKVSRK 156
           +A  F   D  K++N VLDK++ +
Sbjct: 124 LAKGFGGTDGHKYVNGVLDKLAAR 147


>gi|27904889|ref|NP_778015.1| transcription antitermination protein NusB [Buchnera aphidicola
           str. Bp (Baizongia pistaciae)]
 gi|29427633|sp|P59452|NUSB_BUCBP RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|27904287|gb|AAO27120.1| N utilization substance protein B [Buchnera aphidicola str. Bp
           (Baizongia pistaciae)]
          Length = 144

 Score = 54.7 bits (130), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 42/141 (29%), Positives = 67/141 (47%), Gaps = 13/141 (9%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           R  AR  AVQALY   I      ++I+ ++  +   +           +D  +F  +I G
Sbjct: 8   RRKAREYAVQALYSWQISKNDIYDVINHFKKNKTINE-----------IDQIYFYELIIG 56

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
           +    +++D L+   L+   +   L  I  +ILR    EL + + +P +V I+E + +A 
Sbjct: 57  ITKNLKYLDELMRPYLSR--TIQELGQIEKAILRISFFELDKRYDIPFKVTINESIELAK 114

Query: 136 DFFYGDEPKFINAVLDKVSRK 156
            F   D  KFIN VLDK S K
Sbjct: 115 LFGAKDSHKFINGVLDKASLK 135


>gi|118579723|ref|YP_900973.1| NusB antitermination factor [Pelobacter propionicus DSM 2379]
 gi|166215707|sp|A1ANJ5|NUSB_PELPD RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|118502433|gb|ABK98915.1| NusB antitermination factor [Pelobacter propionicus DSM 2379]
          Length = 143

 Score = 54.7 bits (130), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 26/83 (31%), Positives = 46/83 (55%), Gaps = 1/83 (1%)

Query: 72  IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
           ++ GV++ +  ID  I    ++ WS SR+  +  +I+R    EL+    +P +V I+E +
Sbjct: 50  LVQGVLEHRPAIDAAIK-ARSKNWSLSRMPKVDLNIMRLATYELMFRGDIPKKVSINEAI 108

Query: 132 CIAHDFFYGDEPKFINAVLDKVS 154
            IA  F   D P F+N +LD++ 
Sbjct: 109 EIARRFGDKDSPAFVNGILDEIP 131


>gi|326790845|ref|YP_004308666.1| NusB antitermination factor [Clostridium lentocellum DSM 5427]
 gi|326541609|gb|ADZ83468.1| NusB antitermination factor [Clostridium lentocellum DSM 5427]
          Length = 139

 Score = 54.7 bits (130), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 32/84 (38%), Positives = 47/84 (55%), Gaps = 2/84 (2%)

Query: 75  GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134
           GV +  + ID LI+    + WS +R+  +  SILR  + EL +   VPV+V ++E V IA
Sbjct: 57  GVYEHVKEIDALIAGA-AKNWSMARIAKVDLSILRLAIFEL-QYTDVPVKVAVNEAVEIA 114

Query: 135 HDFFYGDEPKFINAVLDKVSRKEE 158
             +     PKFIN VL  V++  E
Sbjct: 115 KIYSTDKSPKFINGVLGSVTQANE 138


>gi|194364362|ref|YP_002026972.1| transcription antitermination protein NusB [Stenotrophomonas
           maltophilia R551-3]
 gi|238693436|sp|B4SJC1|NUSB_STRM5 RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|194347166|gb|ACF50289.1| NusB antitermination factor [Stenotrophomonas maltophilia R551-3]
          Length = 159

 Score = 54.7 bits (130), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 39/139 (28%), Positives = 64/139 (46%), Gaps = 13/139 (9%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           R  AR  AVQA+Y   I G +   +I++     F  +   ++       DL +F  ++HG
Sbjct: 24  RSRARRRAVQAIYAWQISGGNAQSLIAQ-----FAHEQAREI------ADLAYFEALMHG 72

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
           V+D ++ ID  +   L        +D I  ++LR    EL     VP  V+I+E +  A 
Sbjct: 73  VLDNRRDIDEALGPYLDR--GIEEVDAIERAVLRLAGYELRYRLDVPYRVVINEAIESAK 130

Query: 136 DFFYGDEPKFINAVLDKVS 154
            F       ++N VLD+ +
Sbjct: 131 RFGSEHGHTYVNGVLDRAA 149


>gi|270308448|ref|YP_003330506.1| transcription antitermination factor NusB [Dehalococcoides sp. VS]
 gi|270154340|gb|ACZ62178.1| transcription antitermination factor NusB [Dehalococcoides sp. VS]
          Length = 143

 Score = 54.7 bits (130), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 42/144 (29%), Positives = 69/144 (47%), Gaps = 12/144 (8%)

Query: 12  LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71
           ++  R  AR   +QALY+ D+ G +  +++    T      TE + E +        FR 
Sbjct: 1   MTTSRRKAREIVLQALYEQDLAGHNAEDVLRRLLTE--TPQTEENTEFI--------FR- 49

Query: 72  IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
           + + V+  K+ +D  I       W   +L  I  ++LR  + E+I  + VPV+V I+E V
Sbjct: 50  LTNAVVKHKELLDENIRQ-FASAWPVEQLSYIDRNVLRLAIFEIIHENDVPVKVAINEAV 108

Query: 132 CIAHDFFYGDEPKFINAVLDKVSR 155
            +A  F      +FIN VL  VS+
Sbjct: 109 ELAKSFGGNSSARFINGVLSSVSK 132


>gi|186475383|ref|YP_001856853.1| transcription antitermination protein NusB [Burkholderia phymatum
           STM815]
 gi|238691269|sp|B2JED0|NUSB_BURP8 RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|184191842|gb|ACC69807.1| NusB antitermination factor [Burkholderia phymatum STM815]
          Length = 145

 Score = 54.7 bits (130), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 43/147 (29%), Positives = 65/147 (44%), Gaps = 15/147 (10%)

Query: 10  LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF 69
           +K + RR  +R  A Q LYQ  + G    EI           D +L     Y   D E  
Sbjct: 1   MKSARRR--SRELATQGLYQWLLSGSPAGEI-----------DAQLRGAQGYDKADHEHL 47

Query: 70  RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISE 129
             I+HGV+   + +   ++ CL       +L  +  ++L     EL     +P  V+I+E
Sbjct: 48  DAILHGVIRDSEALSADLAPCLDR--PIDQLSPVERAVLLVAAYELKNHIDIPYRVVINE 105

Query: 130 YVCIAHDFFYGDEPKFINAVLDKVSRK 156
            V +A  F   D  K++N VLDK+S K
Sbjct: 106 AVELAKTFGGADGYKYVNGVLDKLSAK 132


>gi|294083737|ref|YP_003550494.1| NusB antitermination factor [Candidatus Puniceispirillum marinum
           IMCC1322]
 gi|292663309|gb|ADE38410.1| NusB antitermination factor [Candidatus Puniceispirillum marinum
           IMCC1322]
          Length = 160

 Score = 54.7 bits (130), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 42/134 (31%), Positives = 62/134 (46%), Gaps = 9/134 (6%)

Query: 24  VQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDL--EWFRVIIHGVMDRKQ 81
           +Q LYQ  I   ++ +   +Y T+        DV   +   DL  E    +  GV     
Sbjct: 24  IQILYQSQITDRASVDFAPDYLTH-----YAPDVSKSFRVKDLDHEHLNALYTGVEKEMV 78

Query: 82  HIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGD 141
            +D  I+  L   WS  RL +I  ++LR G  EL     +P   ++SEY  I+     G 
Sbjct: 79  LLDEDIADSLASGWSIKRLPLIELTLLRCGAYELRFMPHIPARAVVSEYAAISDAC--GC 136

Query: 142 EPKFINAVLDKVSR 155
           E  F+NAVLD++SR
Sbjct: 137 EVAFVNAVLDRLSR 150


>gi|182413526|ref|YP_001818592.1| NusB antitermination factor [Opitutus terrae PB90-1]
 gi|177840740|gb|ACB74992.1| NusB antitermination factor [Opitutus terrae PB90-1]
          Length = 147

 Score = 54.7 bits (130), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 29/92 (31%), Positives = 49/92 (53%), Gaps = 3/92 (3%)

Query: 72  IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
           +IHGV++    ID  I   L   W F R+  I  +ILR  + E++    +P  V I+E +
Sbjct: 55  LIHGVIEHSDDIDARIKG-LAHNWEFDRIAKIDLTILRLAIFEILHRKDIPPVVSINEAI 113

Query: 132 CIAHDFFYGDEPKFINAVLDKVSRKEEIKRSG 163
            ++  F   D  +FIN +LD++  K+++ R  
Sbjct: 114 DLSKQFSNADAKRFINGILDRL--KDQVGRDA 143


>gi|146310545|ref|YP_001175619.1| transcription antitermination protein NusB [Enterobacter sp. 638]
 gi|166918808|sp|A4W788|NUSB_ENT38 RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|145317421|gb|ABP59568.1| NusB antitermination factor [Enterobacter sp. 638]
          Length = 139

 Score = 54.7 bits (130), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 41/132 (31%), Positives = 65/132 (49%), Gaps = 13/132 (9%)

Query: 23  AVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQH 82
           AVQALY   +      ++      Y+F A  E DV+ V    D+ +FR ++ GV     +
Sbjct: 13  AVQALYSWQLSQNDIADV-----EYQFLA--EQDVKDV----DVLYFRELLSGVATNSAY 61

Query: 83  IDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDE 142
           +D L+   L+       L  +  ++LR  + EL +   VP +V I+E + +A  F   D 
Sbjct: 62  LDGLMKPYLSR--LLEELGQVEKAVLRIALFELAKRDDVPYKVAINEAIELAKTFGAEDS 119

Query: 143 PKFINAVLDKVS 154
            KF+N VLDK +
Sbjct: 120 HKFVNGVLDKAA 131


>gi|329298306|ref|ZP_08255642.1| transcription antitermination protein NusB [Plautia stali symbiont]
          Length = 139

 Score = 54.7 bits (130), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 42/134 (31%), Positives = 66/134 (49%), Gaps = 13/134 (9%)

Query: 23  AVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQH 82
           AVQALY   +      ++      Y+F A  E DV+ V    D+ +FR ++ GV      
Sbjct: 13  AVQALYSWQLSNNDIADV-----EYQFLA--EQDVKDV----DISYFRELLAGVATNSAF 61

Query: 83  IDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDE 142
           +D L+   L+ +     L  +  +ILR  + EL +   VP +V I+E + +A  F   D 
Sbjct: 62  LDGLMKPYLSRQ--LEELGQLEKAILRISLYELSKRDDVPYKVAINEGIELAKVFGAEDS 119

Query: 143 PKFINAVLDKVSRK 156
            KF+N VLDK + +
Sbjct: 120 HKFVNGVLDKAAPQ 133


>gi|319794181|ref|YP_004155821.1| nusb antitermination factor [Variovorax paradoxus EPS]
 gi|315596644|gb|ADU37710.1| NusB antitermination factor [Variovorax paradoxus EPS]
          Length = 178

 Score = 54.7 bits (130), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 40/139 (28%), Positives = 67/139 (48%), Gaps = 13/139 (9%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           R  AR  A+QALYQ  ++G +    I       F  D      + +   D   +  ++HG
Sbjct: 34  RSRAREFALQALYQ-HLVGRNDPTDIDH-----FTRDL-----AGFHKADAAHYDALLHG 82

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
            +D  + +D LI   L  K  F  +  I  +++  GV E   C  VP  V+++E + +A 
Sbjct: 83  SIDNAEQLDALIRPLLDRK--FEEISPIEHAVMWIGVYEFQNCPDVPWRVVLNECIELAK 140

Query: 136 DFFYGDEPKFINAVLDKVS 154
           +F   D  K++NAVL+ ++
Sbjct: 141 EFGGTDGHKYVNAVLNGLA 159


>gi|297616617|ref|YP_003701776.1| NusB antitermination factor [Syntrophothermus lipocalidus DSM
           12680]
 gi|297144454|gb|ADI01211.1| NusB antitermination factor [Syntrophothermus lipocalidus DSM
           12680]
          Length = 138

 Score = 54.7 bits (130), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 43/140 (30%), Positives = 69/140 (49%), Gaps = 17/140 (12%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           R +AR  A + L+Q+D+ G S  + +             L  E+      L + R ++  
Sbjct: 3   RSLARETAFKVLFQVDLAGASPRDALQ-----------HLTAETPLADRYLAFARELVDK 51

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
            ++  + ID  IS    E WS SR+  +  +I+R  V E++     PV V+I+E V +A 
Sbjct: 52  TLEHVKTIDSYISKYSPE-WSISRMATVDRNIMRMAVCEMLYTEIDPV-VVINEAVELAK 109

Query: 136 DFFYGDE--PKFINAVLDKV 153
              YGDE    FINA+LD++
Sbjct: 110 K--YGDENSSSFINAILDRI 127


>gi|217964495|ref|YP_002350173.1| transcription antitermination factor NusB [Listeria monocytogenes
           HCC23]
 gi|254829884|ref|ZP_05234539.1| transcription antitermination protein NusB [Listeria monocytogenes
           10403S]
 gi|254772645|sp|B8DFW9|NUSB_LISMH RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|217333765|gb|ACK39559.1| transcription antitermination factor NusB [Listeria monocytogenes
           HCC23]
 gi|307570941|emb|CAR84120.1| transcription antitermination factor [Listeria monocytogenes L99]
          Length = 128

 Score = 54.7 bits (130), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 44/142 (30%), Positives = 66/142 (46%), Gaps = 21/142 (14%)

Query: 15  RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74
           +R  AR  A+QAL+QI++   S  + I      +   + E D          ++   ++ 
Sbjct: 2   KRREAREKALQALFQIELNEMSLDQAI------KNIMEDEQD----------DYMEKLVE 45

Query: 75  GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134
           GVM  K  ID +I   L + W   RL  +  S+LR  V E+     VP  V ++E + IA
Sbjct: 46  GVMANKAEIDAIIEPNL-DNWRIDRLSKVDLSLLRLSVYEIKYLDDVPNRVSLNESIEIA 104

Query: 135 HDFFYGDEP--KFINAVLDKVS 154
               Y DE   KFIN VL  ++
Sbjct: 105 K--IYSDEKSSKFINGVLANIA 124


>gi|146321671|ref|YP_001201382.1| transcription antitermination protein NusB [Streptococcus suis
           98HAH33]
 gi|145692477|gb|ABP92982.1| Transcription termination factor [Streptococcus suis 98HAH33]
 gi|292559096|gb|ADE32097.1| Antitermination protein NusB [Streptococcus suis GZ1]
          Length = 140

 Score = 54.7 bits (130), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 26/86 (30%), Positives = 48/86 (55%)

Query: 72  IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
           +++GV D +  +D  +SS L   W+  RL +I  +I+R G+ E++     P  V ++E +
Sbjct: 54  LVNGVADYRDDLDKELSSRLKAGWTLDRLTLIDKNIMRLGLFEILHFEETPDRVAVNEAI 113

Query: 132 CIAHDFFYGDEPKFINAVLDKVSRKE 157
            +A +F      KF+N VL +  ++E
Sbjct: 114 ELAKEFSDESSAKFVNGVLSQFIKEE 139


>gi|224534942|ref|ZP_03675511.1| transcription antitermination factor NusB [Borrelia spielmanii
           A14S]
 gi|224513882|gb|EEF84207.1| transcription antitermination factor NusB [Borrelia spielmanii
           A14S]
          Length = 142

 Score = 54.7 bits (130), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 37/140 (26%), Positives = 67/140 (47%), Gaps = 9/140 (6%)

Query: 20  RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79
           R+ A Q +Y IDI   +  +I   +       D   D+E+  +     ++  +++G  + 
Sbjct: 5   RVLAFQKIYSIDINQSAMDDIFDIFN----IEDKGFDIENESIK---SFYSSLVNGTFNN 57

Query: 80  KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLEL-IECHSVPVEVIISEYVCIAHDFF 138
            +HID LI + ++  WS  R+D +  +ILR GV  L  +        +I + + IA  + 
Sbjct: 58  LEHIDSLIRN-ISWNWSLDRMDKVDLAILRMGVYSLKFQNFENSKRAVIDDAILIAKKYG 116

Query: 139 YGDEPKFINAVLDKVSRKEE 158
             +  KFIN +LD + +  E
Sbjct: 117 SKNSYKFINGILDALLKNME 136


>gi|217077046|ref|YP_002334762.1| transcription antitermination protein NusB [Thermosipho africanus
           TCF52B]
 gi|226738907|sp|B7IH57|NUSB_THEAB RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|217036899|gb|ACJ75421.1| transcription antitermination factor NusB [Thermosipho africanus
           TCF52B]
          Length = 142

 Score = 54.7 bits (130), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 28/88 (31%), Positives = 48/88 (54%), Gaps = 1/88 (1%)

Query: 73  IHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVC 132
           I G+    + +D +IS  L + W+  RL +   +ILR G  EL+    VP+EV + E + 
Sbjct: 51  IEGIKKTIESLDEIISKYL-QNWTLDRLSVTDRNILRLGTYELLYVDDVPIEVTLDEMIE 109

Query: 133 IAHDFFYGDEPKFINAVLDKVSRKEEIK 160
           +   +   +  KF+N VLD++++ E  K
Sbjct: 110 LGKTYGTENSGKFVNGVLDRIAKGEAPK 137


>gi|223933712|ref|ZP_03625687.1| NusB antitermination factor [Streptococcus suis 89/1591]
 gi|253752490|ref|YP_003025631.1| N utilization substance protein B homolog (NusB protein)
           [Streptococcus suis SC84]
 gi|253754316|ref|YP_003027457.1| N utilization substance protein B homolog (NusB protein)
           [Streptococcus suis P1/7]
 gi|253756250|ref|YP_003029390.1| N utilization substance protein B homolog (NusB protein)
           [Streptococcus suis BM407]
 gi|302024430|ref|ZP_07249641.1| transcription antitermination protein NusB [Streptococcus suis
           05HAS68]
 gi|330833433|ref|YP_004402258.1| transcription antitermination protein NusB [Streptococcus suis ST3]
 gi|223897628|gb|EEF64014.1| NusB antitermination factor [Streptococcus suis 89/1591]
 gi|251816779|emb|CAZ52422.1| N utilization substance protein B homolog (NusB protein)
           [Streptococcus suis SC84]
 gi|251818714|emb|CAZ56550.1| N utilization substance protein B homolog (NusB protein)
           [Streptococcus suis BM407]
 gi|251820562|emb|CAR47318.1| N utilization substance protein B homolog (NusB protein)
           [Streptococcus suis P1/7]
 gi|319758898|gb|ADV70840.1| transcription antitermination protein NusB [Streptococcus suis
           JS14]
 gi|329307656|gb|AEB82072.1| transcription antitermination protein NusB [Streptococcus suis ST3]
          Length = 139

 Score = 54.7 bits (130), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 26/86 (30%), Positives = 48/86 (55%)

Query: 72  IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
           +++GV D +  +D  +SS L   W+  RL +I  +I+R G+ E++     P  V ++E +
Sbjct: 53  LVNGVADYRDDLDKELSSRLKAGWTLDRLTLIDKNIMRLGLFEILHFEETPDRVAVNEAI 112

Query: 132 CIAHDFFYGDEPKFINAVLDKVSRKE 157
            +A +F      KF+N VL +  ++E
Sbjct: 113 ELAKEFSDESSAKFVNGVLSQFIKEE 138


>gi|332637334|ref|ZP_08416197.1| transcription antitermination protein NusB [Weissella cibaria KACC
           11862]
          Length = 140

 Score = 54.3 bits (129), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 24/82 (29%), Positives = 47/82 (57%), Gaps = 1/82 (1%)

Query: 72  IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
           +++G++D +   DL IS  L + W+  RL++    ++R  + E ++    P ++ ++E +
Sbjct: 55  MVNGIVDHQDEFDLTISEYLADGWTIDRLNLADVVLMRVAMYE-VKYAETPAKIAVNEAL 113

Query: 132 CIAHDFFYGDEPKFINAVLDKV 153
            +AHDF      KFIN +L+K 
Sbjct: 114 QLAHDFTDDASRKFINGILNKA 135


>gi|254498159|ref|ZP_05110911.1| transcription termination factor NusB [Legionella drancourtii
           LLAP12]
 gi|254352625|gb|EET11408.1| transcription termination factor NusB [Legionella drancourtii
           LLAP12]
          Length = 147

 Score = 54.3 bits (129), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 35/138 (25%), Positives = 70/138 (50%), Gaps = 13/138 (9%)

Query: 19  ARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMD 78
           AR  A+QALYQ  + G   +EI +++   R   +           VD+++F  +++G+ +
Sbjct: 12  ARKLALQALYQWFMSGSEVSEIEAQF---RLINNMS--------KVDVDYFCRLLYGIPE 60

Query: 79  RKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFF 138
               ++   S  L  +     L+ I  ++LR G  EL  C  VP +V++ E + +  +F 
Sbjct: 61  HINELENSFSPFLDRE--VHELNPIELTVLRLGSFELFHCPEVPYKVVLDEAISLTKEFG 118

Query: 139 YGDEPKFINAVLDKVSRK 156
             D  +++N VL+ ++++
Sbjct: 119 SQDGYRYVNGVLNNLAQQ 136


>gi|124005043|ref|ZP_01689885.1| NusB antitermination factor [Microscilla marina ATCC 23134]
 gi|123989295|gb|EAY28856.1| NusB antitermination factor [Microscilla marina ATCC 23134]
          Length = 462

 Score = 54.3 bits (129), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 43/160 (26%), Positives = 81/160 (50%), Gaps = 8/160 (5%)

Query: 9   DLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETY-RFCADTELDVESVYLHVDLE 67
           DL  S  R + +  AV+ +  I  +G +  E     ET      + EL   S     D+ 
Sbjct: 299 DLSWSENRKVVQSMAVKTIKAI--MGDTEEEDGDAEETEITINKNFELSPLSKNWDEDVV 356

Query: 68  WFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVII 127
           +++ + +  ++  Q  + +I+   T+ W   RL +I   IL+  + E+I  +S+PV+V I
Sbjct: 357 FYKNLYNFNVEGNQRYEDIIAKK-TKNWDIERLALIDKVILKMAICEMINFYSIPVKVTI 415

Query: 128 SEYVCIAHDFFYGDEPKFINAVLDKVSR----KEEIKRSG 163
           +EY+ +A  +      KF+N +LD +++    + +IK+SG
Sbjct: 416 NEYIELAKTYSTPKSKKFVNGLLDSIAQDLIEQGDIKKSG 455


>gi|290961848|ref|YP_003493030.1| NusB family protein [Streptomyces scabiei 87.22]
 gi|260651374|emb|CBG74496.1| putative NusB-family protein [Streptomyces scabiei 87.22]
          Length = 144

 Score = 54.3 bits (129), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 34/138 (24%), Positives = 64/138 (46%), Gaps = 9/138 (6%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           R  AR  A Q L++ D  G     +++++  +      +  V    +         ++ G
Sbjct: 4   RNTARKRAFQILFEGDQRGADVLTVLADWIRHAHNDTRQPPVSEYTMQ--------LVEG 55

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
             +  + ID LI+   +  W+  R+ ++  +ILR G  ELI   + P  V++ E V +A 
Sbjct: 56  YSEHARRIDELIAQY-SVGWTLDRMPVVDRNILRLGAYELIWVDATPDAVVLDEMVQLAK 114

Query: 136 DFFYGDEPKFINAVLDKV 153
           +F   D P F+N +L ++
Sbjct: 115 EFSTDDSPSFVNGLLGRL 132


>gi|189424280|ref|YP_001951457.1| NusB antitermination factor [Geobacter lovleyi SZ]
 gi|238692133|sp|B3E757|NUSB_GEOLS RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|189420539|gb|ACD94937.1| NusB antitermination factor [Geobacter lovleyi SZ]
          Length = 142

 Score = 54.3 bits (129), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 35/135 (25%), Positives = 66/135 (48%), Gaps = 12/135 (8%)

Query: 19  ARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMD 78
           AR  A+Q LY  D +  S  + +     +R   +T             E+   ++ GVM+
Sbjct: 7   ARELALQMLYAQDTLQGSLRDTLR---GFREGVETG--------ERTREFAEALVQGVME 55

Query: 79  RKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFF 138
            ++ ID  I +  ++ W+ SR+  +  +I+R    EL+    +P +V I+E + IA  + 
Sbjct: 56  HREAIDQAIVA-RSKNWALSRMPRVDLNIMRMAAYELMFKRDIPKKVSINEAIEIAKKYG 114

Query: 139 YGDEPKFINAVLDKV 153
             + P F+N +LD++
Sbjct: 115 DKESPAFVNGILDEL 129


>gi|111114929|ref|YP_709547.1| transcription antitermination protein NusB [Borrelia afzelii PKo]
 gi|119372279|sp|Q0SP57|NUSB_BORAP RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|110890203|gb|ABH01371.1| N-utilization substance protein B [Borrelia afzelii PKo]
          Length = 137

 Score = 54.3 bits (129), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 38/140 (27%), Positives = 67/140 (47%), Gaps = 9/140 (6%)

Query: 20  RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79
           R+ A Q +Y IDI   +  +I   +       D  LD+E+  +     ++  +++G  + 
Sbjct: 5   RVLAFQKIYSIDINQSAMDDIFDIFN----IEDKGLDIENESIK---SFYSSLVNGTFNN 57

Query: 80  KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLEL-IECHSVPVEVIISEYVCIAHDFF 138
            +HID LI   ++  WS  R+D +  +ILR GV  L  +        +I + + IA  + 
Sbjct: 58  LEHIDSLIRD-ISWNWSLDRMDKVDLAILRMGVYSLKFQNFENSKRAVIDDAILIAKKYG 116

Query: 139 YGDEPKFINAVLDKVSRKEE 158
             +  KFIN +LD + +  E
Sbjct: 117 SKNSCKFINGILDALLKNME 136


>gi|283784235|ref|YP_003364100.1| N utilization substance protein B [Citrobacter rodentium ICC168]
 gi|282947689|emb|CBG87244.1| N utilization substance protein B [Citrobacter rodentium ICC168]
          Length = 139

 Score = 54.3 bits (129), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 41/132 (31%), Positives = 65/132 (49%), Gaps = 13/132 (9%)

Query: 23  AVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQH 82
           AVQALY   +      ++      Y+F A  E DV+ V    D+ +FR ++ GV     +
Sbjct: 13  AVQALYSWQLSQNDIADV-----EYQFLA--EQDVKDV----DVMYFRELLSGVATNSAY 61

Query: 83  IDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDE 142
           +D L+   L+       L  +  ++LR  + EL +   VP +V I+E + +A  F   D 
Sbjct: 62  LDGLMKPYLSR--LLEELGQVEKAVLRIALFELSKRSDVPYKVAINEAIELAKTFGAEDS 119

Query: 143 PKFINAVLDKVS 154
            KF+N VLDK +
Sbjct: 120 HKFVNGVLDKAA 131


>gi|254434713|ref|ZP_05048221.1| transcription antitermination factor NusB [Nitrosococcus oceani
           AFC27]
 gi|207091046|gb|EDZ68317.1| transcription antitermination factor NusB [Nitrosococcus oceani
           AFC27]
          Length = 136

 Score = 54.3 bits (129), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 35/133 (26%), Positives = 66/133 (49%), Gaps = 14/133 (10%)

Query: 24  VQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHI 83
           +Q LYQ  ++G    +I           D E  V+ +   +D  +F+ ++ GV  R+  +
Sbjct: 1   MQGLYQWQLMGQDVDKI-----------DIEFIVQDIR-GIDHAYFQELLRGVPQRQGEL 48

Query: 84  DLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEP 143
           D  +   L      + +D + C+ILR G  EL+    +P  V+++E + +A  F      
Sbjct: 49  DECLGPFLDR--PINEVDPVECAILRIGAFELLCRPEIPYRVVLNEAIELAKRFGAEHGH 106

Query: 144 KFINAVLDKVSRK 156
           +++N +LDKV++K
Sbjct: 107 RYVNGILDKVAQK 119


>gi|156935035|ref|YP_001438951.1| transcription antitermination protein NusB [Cronobacter sakazakii
           ATCC BAA-894]
 gi|166215688|sp|A7MFG4|NUSB_ENTS8 RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|156533289|gb|ABU78115.1| hypothetical protein ESA_02886 [Cronobacter sakazakii ATCC BAA-894]
          Length = 139

 Score = 54.3 bits (129), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 41/132 (31%), Positives = 66/132 (50%), Gaps = 13/132 (9%)

Query: 23  AVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQH 82
           AVQALY   +      ++      Y+F A  E DV+ V    D+ +FR ++ GV     +
Sbjct: 13  AVQALYSWQLSHNDIADV-----EYQFLA--EQDVKDV----DVMYFRELLSGVATNSGY 61

Query: 83  IDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDE 142
           +D L+   L+ +     L  +  ++LR  + EL +   VP +V I+E + +A  F   D 
Sbjct: 62  LDGLMKPYLSRQ--LEELGQVEKAVLRIALFELSKRDDVPYKVAINEAIELAKVFGAEDS 119

Query: 143 PKFINAVLDKVS 154
            KF+N VLDK +
Sbjct: 120 HKFVNGVLDKAA 131


>gi|238791410|ref|ZP_04635048.1| N utilization substance protein B [Yersinia intermedia ATCC 29909]
 gi|238729026|gb|EEQ20542.1| N utilization substance protein B [Yersinia intermedia ATCC 29909]
          Length = 138

 Score = 54.3 bits (129), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 44/134 (32%), Positives = 65/134 (48%), Gaps = 17/134 (12%)

Query: 23  AVQALYQIDIIGCSTTEIISEYETYRFCADTELDV--ESVYLHVDLEWFRVIIHGVMDRK 80
           AVQALY   +   S  +I          AD EL    E     VD+ +FR ++ GV    
Sbjct: 13  AVQALYSWQL---SKNDI----------ADVELQFLSEQDVKDVDISYFRELLSGVAVNA 59

Query: 81  QHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYG 140
             +D L++  L+ +     L  +  +ILR  + EL +   VP +V I+E + +A  F   
Sbjct: 60  TSLDALMAPFLSRQ--LEELGQVERAILRIALFELSKRDDVPYKVAINEAIELAKTFGAE 117

Query: 141 DEPKFINAVLDKVS 154
           D  KF+N VLDKV+
Sbjct: 118 DSHKFVNGVLDKVA 131


>gi|260596785|ref|YP_003209356.1| transcription antitermination protein NusB [Cronobacter turicensis
           z3032]
 gi|260215962|emb|CBA28587.1| N utilization substance protein B homolog [Cronobacter turicensis
           z3032]
          Length = 139

 Score = 54.3 bits (129), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 41/132 (31%), Positives = 66/132 (50%), Gaps = 13/132 (9%)

Query: 23  AVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQH 82
           AVQALY   +      ++      Y+F A  E DV+ V    D+ +FR ++ GV     +
Sbjct: 13  AVQALYSWQLSHNDIADV-----EYQFLA--EQDVKDV----DVMYFRELLSGVATNSGY 61

Query: 83  IDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDE 142
           +D L+   L+ +     L  +  ++LR  + EL +   VP +V I+E + +A  F   D 
Sbjct: 62  LDGLMKPYLSRQ--LEELGQVEKAVLRIALFELSKRDDVPYKVAINEAIELAKVFGAEDS 119

Query: 143 PKFINAVLDKVS 154
            KF+N VLDK +
Sbjct: 120 HKFVNGVLDKAA 131


>gi|51598370|ref|YP_072558.1| transcription antitermination protein NusB [Borrelia garinii PBi]
 gi|81610223|sp|Q662Q5|NUSB_BORGA RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|51572941|gb|AAU06966.1| N-utilization substance protein B [Borrelia garinii PBi]
          Length = 142

 Score = 54.3 bits (129), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 38/140 (27%), Positives = 67/140 (47%), Gaps = 9/140 (6%)

Query: 20  RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79
           R+ A Q +Y IDI   +  +I   +       D  LD+E+  +     ++  +++G  + 
Sbjct: 5   RVLAFQKIYSIDINQSAMDDIFDIFS----IEDKGLDIENESIK---SFYSSLVNGTFNN 57

Query: 80  KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLEL-IECHSVPVEVIISEYVCIAHDFF 138
            ++ID LI   ++  WS  R+D +  +ILR GV  L  +        +I E + IA  + 
Sbjct: 58  LEYIDSLIKD-ISWNWSLDRMDKVDLAILRMGVYSLKFQNFENSKRALIDEAILIAKKYG 116

Query: 139 YGDEPKFINAVLDKVSRKEE 158
             +  KFIN +LD + +  E
Sbjct: 117 SKNSDKFINGILDALLKNME 136


>gi|220912760|ref|YP_002488069.1| NusB antitermination factor [Arthrobacter chlorophenolicus A6]
 gi|254772610|sp|B8H8V2|NUSB_ARTCA RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|219859638|gb|ACL39980.1| NusB antitermination factor [Arthrobacter chlorophenolicus A6]
          Length = 136

 Score = 54.3 bits (129), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 28/84 (33%), Positives = 46/84 (54%), Gaps = 1/84 (1%)

Query: 72  IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
           I+ GV+ R+Q ID  + +  ++ WS  R+  +   ILR G  EL+    VP  V +SE V
Sbjct: 47  IVEGVVSRQQAIDEFLETY-SQGWSLERMPSVDRIILRIGTWELLYNDDVPDGVAVSEAV 105

Query: 132 CIAHDFFYGDEPKFINAVLDKVSR 155
            +A      + P+FIN +L ++ +
Sbjct: 106 ALAKTLSTDESPQFINGLLGRLQQ 129


>gi|294102024|ref|YP_003553882.1| NusB antitermination factor [Aminobacterium colombiense DSM 12261]
 gi|293617004|gb|ADE57158.1| NusB antitermination factor [Aminobacterium colombiense DSM 12261]
          Length = 158

 Score = 54.3 bits (129), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 45/145 (31%), Positives = 70/145 (48%), Gaps = 14/145 (9%)

Query: 12  LSHRRGIARLAAVQALYQIDIIGCSTTEIISE-YETYRFCADTELDVESVYLHVDLEWFR 70
           L  +R  +R  A+Q LY +DI     +E ++E +  Y F  D E DV S        +  
Sbjct: 6   LPQKRRRSREIAIQILYALDI---RNSEKVNEMFSLYPF-GDEEPDVVS--------YAS 53

Query: 71  VIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEY 130
           +++ GV + +  ID LI   +   W   R+  +  + LR  + E I    +PV V ISE 
Sbjct: 54  LLVKGVWEARFEIDTLIRKHVV-GWRPERMVAVDRAALRLAIYEGIIKQMIPVPVAISEA 112

Query: 131 VCIAHDFFYGDEPKFINAVLDKVSR 155
           V +A  F   +  +F+N VL K+ R
Sbjct: 113 VELAKTFGTDESGRFVNGVLGKIVR 137


>gi|297569245|ref|YP_003690589.1| NusB antitermination factor [Desulfurivibrio alkaliphilus AHT2]
 gi|296925160|gb|ADH85970.1| NusB antitermination factor [Desulfurivibrio alkaliphilus AHT2]
          Length = 138

 Score = 54.3 bits (129), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 41/141 (29%), Positives = 66/141 (46%), Gaps = 14/141 (9%)

Query: 23  AVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQH 82
           A+QALYQ D+   S  + +        C + E+  ++      L +   ++ GV+     
Sbjct: 11  ALQALYQADMSNVSALDTLPV-----LCENFEVSRKA------LPYGEGLVGGVVANLAA 59

Query: 83  IDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDE 142
           ID +I +  +  W  SR+  I  +I+R  V E      VP  V I+E + +A  F   D 
Sbjct: 60  IDRIIEAG-SAHWRVSRMSCIDRNIIRIAVYEFNFAADVPAGVAINEAIELAKRFGSEDS 118

Query: 143 PKFINAVLDKVSRKEEIKRSG 163
           P FIN VLD +  ++ + R G
Sbjct: 119 PAFINGVLDAI--RKTLSRQG 137


>gi|238752770|ref|ZP_04614239.1| N utilization substance protein B [Yersinia rohdei ATCC 43380]
 gi|238709028|gb|EEQ01277.1| N utilization substance protein B [Yersinia rohdei ATCC 43380]
          Length = 138

 Score = 54.3 bits (129), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 42/134 (31%), Positives = 65/134 (48%), Gaps = 17/134 (12%)

Query: 23  AVQALYQIDIIGCSTTEIISEYETYRFCADTELDV--ESVYLHVDLEWFRVIIHGVMDRK 80
           AVQALY   +   S  +I          AD EL    E     VD+ +FR ++ GV    
Sbjct: 13  AVQALYSWQL---SKNDI----------ADVELQFLSEQDVKDVDISYFRELLSGVAVNA 59

Query: 81  QHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYG 140
             +D L++  L+ +     L  +  ++LR  + EL +   VP +V I+E + +A  F   
Sbjct: 60  ASLDALMAPVLSRQ--LEELGQVERAVLRIALFELSKRDDVPYKVAINEAIELAKTFGAA 117

Query: 141 DEPKFINAVLDKVS 154
           D  KF+N VLDK++
Sbjct: 118 DSHKFVNGVLDKLA 131


>gi|88859180|ref|ZP_01133821.1| transcription termination factor [Pseudoalteromonas tunicata D2]
 gi|88819406|gb|EAR29220.1| transcription termination factor [Pseudoalteromonas tunicata D2]
          Length = 136

 Score = 54.3 bits (129), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 41/147 (27%), Positives = 76/147 (51%), Gaps = 14/147 (9%)

Query: 10  LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF 69
           +K + RR  AR+ A+QA+Y   + G +  +I           + ++ +E+    +D+E+F
Sbjct: 1   MKPAARRK-ARILALQAIYSWQVSGNAIADI-----------EQQMLLENDISKIDVEYF 48

Query: 70  RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISE 129
           + +  GV  + + +D+++S  L     +  +D +  +ILR    EL     VP +V I+E
Sbjct: 49  KDLACGVAVQHKVLDVILSPHLAR--PYEDIDFVEKAILRLSAYELKFREDVPYKVAINE 106

Query: 130 YVCIAHDFFYGDEPKFINAVLDKVSRK 156
            + +A  F   D  KF+N VLDK  ++
Sbjct: 107 GIELAKMFGAEDSHKFVNGVLDKAVKE 133


>gi|281413741|ref|ZP_06245483.1| transcription antitermination factor NusB [Micrococcus luteus NCTC
           2665]
          Length = 125

 Score = 54.3 bits (129), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 31/98 (31%), Positives = 53/98 (54%), Gaps = 2/98 (2%)

Query: 58  ESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIE 117
           ES  L V+  + + ++ GV+  ++ +D  +SS  +  WS  R+  +  +ILR G  EL+ 
Sbjct: 23  ESTDLQVN-AYTQRLVEGVIADQERLDEALSSY-SRGWSLDRMPAVDRAILRVGAWELLF 80

Query: 118 CHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSR 155
              VP  V ISE V +A      D P+F+N +L ++ +
Sbjct: 81  QDDVPDAVAISEAVALAAQLSTDDSPEFVNGLLGRLQQ 118


>gi|187925077|ref|YP_001896719.1| transcription antitermination protein NusB [Burkholderia
           phytofirmans PsJN]
 gi|238689481|sp|B2T6D1|NUSB_BURPP RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|187716271|gb|ACD17495.1| NusB antitermination factor [Burkholderia phytofirmans PsJN]
          Length = 144

 Score = 54.3 bits (129), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 42/145 (28%), Positives = 64/145 (44%), Gaps = 15/145 (10%)

Query: 10  LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF 69
           +K + RR  +R  A Q LYQ  + G    EI           D +L     +   D E  
Sbjct: 1   MKSARRR--SRELATQGLYQWLLSGSPGGEI-----------DAQLRGAQGFDKADHEHL 47

Query: 70  RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISE 129
             I+HGV+   + +   I+ CL       +L  +  ++L     EL     +P  V+I+E
Sbjct: 48  DAILHGVIRDSEALSAAIAPCLDR--PIEQLSPVERAVLLVAAFELKNHVDIPYRVVINE 105

Query: 130 YVCIAHDFFYGDEPKFINAVLDKVS 154
            V +A  F   D  K++N VLDK+S
Sbjct: 106 AVELAKTFGGADGYKYVNGVLDKLS 130


>gi|326329789|ref|ZP_08196109.1| transcription antitermination factor NusB [Nocardioidaceae
           bacterium Broad-1]
 gi|325952375|gb|EGD44395.1| transcription antitermination factor NusB [Nocardioidaceae
           bacterium Broad-1]
          Length = 137

 Score = 54.3 bits (129), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 29/84 (34%), Positives = 46/84 (54%), Gaps = 2/84 (2%)

Query: 72  IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
           I+ GV+   + ID LIS    + W+ +R+  +  ++LR GV EL++   V  EV ISE  
Sbjct: 51  IVRGVVAEAERIDALIS-AFAKDWTLARMPAVDRNVLRIGVWELLDGD-VASEVAISEAT 108

Query: 132 CIAHDFFYGDEPKFINAVLDKVSR 155
            +  +    D P F+N VL  V++
Sbjct: 109 ALVTELSTDDSPSFVNGVLAAVAK 132


>gi|238795564|ref|ZP_04639079.1| N utilization substance protein B [Yersinia mollaretii ATCC 43969]
 gi|238720683|gb|EEQ12484.1| N utilization substance protein B [Yersinia mollaretii ATCC 43969]
          Length = 138

 Score = 54.3 bits (129), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 38/122 (31%), Positives = 60/122 (49%), Gaps = 4/122 (3%)

Query: 35  CSTTEIISEYETYRFCADTELDV--ESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLT 92
           C+   I S   +    AD EL    E     VD+ +FR ++ GV      +D L++  L+
Sbjct: 12  CAVQAIYSWQLSKNDIADVELQFLSEQDVKDVDIAYFRELLSGVAVNAASLDALMAPFLS 71

Query: 93  EKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDK 152
            +     L  +  ++LR  + EL +   VP +V I+E + +A  F   D  KF+N VLDK
Sbjct: 72  RQ--LEELGQVERAVLRIALFELSKREDVPYKVAINEAIELAKTFGAEDSHKFVNGVLDK 129

Query: 153 VS 154
           V+
Sbjct: 130 VA 131


>gi|156973480|ref|YP_001444387.1| transcription antitermination protein NusB [Vibrio harveyi ATCC
           BAA-1116]
 gi|269962347|ref|ZP_06176697.1| N utilization substance protein B [Vibrio harveyi 1DA3]
 gi|166215728|sp|A7MWU1|NUSB_VIBHB RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|156525074|gb|ABU70160.1| hypothetical protein VIBHAR_01170 [Vibrio harveyi ATCC BAA-1116]
 gi|269832843|gb|EEZ86952.1| N utilization substance protein B [Vibrio harveyi 1DA3]
          Length = 155

 Score = 54.3 bits (129), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 42/148 (28%), Positives = 71/148 (47%), Gaps = 6/148 (4%)

Query: 10  LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYL---HVDL 66
           +K + RR  AR  A+QA+Y   I   +   I  ++ +     + EL      L     D+
Sbjct: 5   VKPAARRN-ARQFALQAIYSWQITKDNVATIEEQFLSGDKYDEEELHASEPALAAPETDV 63

Query: 67  EWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVI 126
            +FR ++ GV+     +D  I   ++       LDM+  ++LR  + E+     VP +V+
Sbjct: 64  AYFRELLSGVVLSHSELDSKIRPYVSR--PMQDLDMMELALLRLAMYEMTRREDVPYKVV 121

Query: 127 ISEYVCIAHDFFYGDEPKFINAVLDKVS 154
           I+E + +A  F   D  KF+N VLDK +
Sbjct: 122 INEAIELAKVFAAEDSHKFVNGVLDKAA 149


>gi|29833402|ref|NP_828036.1| transcription antitermination protein NusB [Streptomyces
           avermitilis MA-4680]
 gi|39931877|sp|Q827R4|NUSB_STRAW RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|29610525|dbj|BAC74571.1| putative transcription termination protein [Streptomyces
           avermitilis MA-4680]
          Length = 144

 Score = 54.3 bits (129), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 38/147 (25%), Positives = 65/147 (44%), Gaps = 12/147 (8%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           R  AR  A Q L++ D  G     +++++  +      +  V    +         ++ G
Sbjct: 4   RNTARKRAFQILFEGDQRGVDVLTVLADWIRHSRTDTRQPPVSEYTMQ--------LVEG 55

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
              +   ID LIS      W+  R+ ++  +ILR G  EL+     P  V++ E V +A 
Sbjct: 56  YAKKVNRIDELISQYAV-GWTLDRMPVVDRNILRLGTYELLWVDETPDAVVLDEAVQLAK 114

Query: 136 DFFYGDEPKFINAVLDKVSRKEEIKRS 162
           +F   D P F+N +L    R +E+K S
Sbjct: 115 EFSTDDSPAFVNGLL---GRLKELKPS 138


>gi|220931474|ref|YP_002508382.1| NusB antitermination factor [Halothermothrix orenii H 168]
 gi|259514846|sp|B8D2G0|NUSB_HALOH RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|219992784|gb|ACL69387.1| NusB antitermination factor [Halothermothrix orenii H 168]
          Length = 134

 Score = 54.3 bits (129), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 46/134 (34%), Positives = 66/134 (49%), Gaps = 13/134 (9%)

Query: 20  RLAAVQALYQIDIIGCSTTEIISEYETYR-FCADTELDVESVYLHVDLEWFRVIIHGVMD 78
           R+ A+Q LY +DI   S   I    +T R F     LD +  Y       F  I+ GV++
Sbjct: 9   RVWALQILYSLDI--SSELNIQKARKTCREFKYKKVLDKKRYY-------FEDIVEGVIN 59

Query: 79  RKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFF 138
            +Q +D +I+    + W   R+  I  +ILR  + E+     +PV V I E V IA DF 
Sbjct: 60  SRQDLDSIINKYAID-WDVERMACIDRNILRIALYEI--ESGLPVGVAIDEAVEIAKDFG 116

Query: 139 YGDEPKFINAVLDK 152
             + PKFIN +L K
Sbjct: 117 DSNSPKFINGILAK 130


>gi|313837743|gb|EFS75457.1| transcription antitermination factor NusB [Propionibacterium acnes
           HL037PA2]
 gi|314927375|gb|EFS91206.1| transcription antitermination factor NusB [Propionibacterium acnes
           HL044PA1]
 gi|314972681|gb|EFT16778.1| transcription antitermination factor NusB [Propionibacterium acnes
           HL037PA3]
 gi|328907460|gb|EGG27226.1| transcription antitermination factor NusB [Propionibacterium sp.
           P08]
          Length = 256

 Score = 53.9 bits (128), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 31/138 (22%), Positives = 65/138 (47%), Gaps = 14/138 (10%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           R  AR  A+  L++ D++G    E+++                SV+++    +   ++ G
Sbjct: 32  RSKARKQALDILFEADLMGTDPLEVLAARP-------------SVFINPVRPFAADLVRG 78

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
           V   +  +D +++ CL+E W+  R+  +   + R G  E++   + P   +ISE + ++ 
Sbjct: 79  VAATQAGLDSVLADCLSEGWTLDRMPRVDRILARLGTFEILHTDT-PNPAVISEAIELSE 137

Query: 136 DFFYGDEPKFINAVLDKV 153
           +F   D   F+N +L  V
Sbjct: 138 EFSTDDSAPFLNGLLSAV 155


>gi|91784900|ref|YP_560106.1| transcription antitermination protein NusB [Burkholderia xenovorans
           LB400]
 gi|119372284|sp|Q13V35|NUSB_BURXL RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|91688854|gb|ABE32054.1| NusB antitermination factor [Burkholderia xenovorans LB400]
          Length = 144

 Score = 53.9 bits (128), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 41/145 (28%), Positives = 64/145 (44%), Gaps = 15/145 (10%)

Query: 10  LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF 69
           +K + RR  +R  A Q LYQ  + G    EI           D +L     +   D E  
Sbjct: 1   MKSARRR--SRELATQGLYQWLLSGSPGGEI-----------DAQLRGAQGFDKADHEHL 47

Query: 70  RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISE 129
             ++HGV+   + +   I+ CL       +L  +  ++L     EL     +P  V+I+E
Sbjct: 48  DAVLHGVIRDSEALSAAIAPCLDR--PIEQLSPVERAVLLVAAFELKNHLDIPYRVVINE 105

Query: 130 YVCIAHDFFYGDEPKFINAVLDKVS 154
            V +A  F   D  K++N VLDK+S
Sbjct: 106 AVELAKTFGGADGYKYVNGVLDKLS 130


>gi|28897457|ref|NP_797062.1| transcription antitermination protein NusB [Vibrio parahaemolyticus
           RIMD 2210633]
 gi|153840491|ref|ZP_01993158.1| transcription antitermination factor NusB [Vibrio parahaemolyticus
           AQ3810]
 gi|260364269|ref|ZP_05776968.1| transcription antitermination factor NusB [Vibrio parahaemolyticus
           K5030]
 gi|260876417|ref|ZP_05888772.1| transcription antitermination factor NusB [Vibrio parahaemolyticus
           AN-5034]
 gi|260898688|ref|ZP_05907184.1| transcription antitermination factor NusB [Vibrio parahaemolyticus
           Peru-466]
 gi|260899217|ref|ZP_05907612.1| transcription antitermination factor NusB [Vibrio parahaemolyticus
           AQ4037]
 gi|31076798|sp|Q87RU3|NUSB_VIBPA RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|28805669|dbj|BAC58946.1| N utilization substance protein B [Vibrio parahaemolyticus RIMD
           2210633]
 gi|149745845|gb|EDM56975.1| transcription antitermination factor NusB [Vibrio parahaemolyticus
           AQ3810]
 gi|308086855|gb|EFO36550.1| transcription antitermination factor NusB [Vibrio parahaemolyticus
           Peru-466]
 gi|308092966|gb|EFO42661.1| transcription antitermination factor NusB [Vibrio parahaemolyticus
           AN-5034]
 gi|308106640|gb|EFO44180.1| transcription antitermination factor NusB [Vibrio parahaemolyticus
           AQ4037]
 gi|308113746|gb|EFO51286.1| transcription antitermination factor NusB [Vibrio parahaemolyticus
           K5030]
          Length = 155

 Score = 53.9 bits (128), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 42/148 (28%), Positives = 71/148 (47%), Gaps = 6/148 (4%)

Query: 10  LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYL---HVDL 66
           +K + RR  AR  A+QA+Y   I   +   I  ++ +     + EL      L     D+
Sbjct: 5   VKPAARRN-ARQFALQAIYSWQITKENVATIEEQFLSGDKYDEEELRASEPALAAPETDV 63

Query: 67  EWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVI 126
            +FR ++ GV+     +D  I   ++       LDM+  ++LR  + E+     VP +V+
Sbjct: 64  AYFRELLSGVVLSHAELDSKIRPYVSR--PMQDLDMMELALLRLAMYEMTRREDVPYKVV 121

Query: 127 ISEYVCIAHDFFYGDEPKFINAVLDKVS 154
           I+E + +A  F   D  KF+N VLDK +
Sbjct: 122 INEAIELAKVFAAEDSHKFVNGVLDKAA 149


>gi|222111432|ref|YP_002553696.1| nusb antitermination factor [Acidovorax ebreus TPSY]
 gi|254772634|sp|B9MBL7|NUSB_DIAST RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|221730876|gb|ACM33696.1| NusB antitermination factor [Acidovorax ebreus TPSY]
          Length = 177

 Score = 53.9 bits (128), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 42/141 (29%), Positives = 67/141 (47%), Gaps = 13/141 (9%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           R  AR  A+QALYQ  + G   T I        F  D      S +   D   +  ++HG
Sbjct: 35  RSRAREFALQALYQHLVGGNDATAIDV------FTRDL-----SGFHKADAAHYDALLHG 83

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
            +   Q++D LI+  L  K   S +  I  +++  GV E   C  VP  V+I+E + +A 
Sbjct: 84  CITTAQYMDELIAPQLDRK--MSEISPIEHAVMWIGVYEFQHCQDVPWRVVINECIELAK 141

Query: 136 DFFYGDEPKFINAVLDKVSRK 156
           +F   D  K++N VL+ ++ +
Sbjct: 142 EFGGTDGHKYVNGVLNGLAPQ 162


>gi|121595089|ref|YP_986985.1| NusB antitermination factor [Acidovorax sp. JS42]
 gi|166215657|sp|A1W9I4|NUSB_ACISJ RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|120607169|gb|ABM42909.1| NusB antitermination factor [Acidovorax sp. JS42]
          Length = 177

 Score = 53.9 bits (128), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 42/141 (29%), Positives = 67/141 (47%), Gaps = 13/141 (9%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           R  AR  A+QALYQ  + G   T I        F  D      S +   D   +  ++HG
Sbjct: 35  RSRAREFALQALYQHLVGGNDATAIDV------FTRDL-----SGFHKADAAHYDALLHG 83

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
            +   Q++D LI+  L  K   S +  I  +++  GV E   C  VP  V+I+E + +A 
Sbjct: 84  CITTAQYMDELIAPQLDRK--MSEISPIEHAVMWIGVYEFQHCQDVPWRVVINECIELAK 141

Query: 136 DFFYGDEPKFINAVLDKVSRK 156
           +F   D  K++N VL+ ++ +
Sbjct: 142 EFGGTDGHKYVNGVLNGLAPQ 162


>gi|138895967|ref|YP_001126420.1| transcription antitermination protein NusB [Geobacillus
           thermodenitrificans NG80-2]
 gi|166215689|sp|A4IQS1|NUSB_GEOTN RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|134267480|gb|ABO67675.1| N utilization substance protein B [Geobacillus thermodenitrificans
           NG80-2]
          Length = 130

 Score = 53.9 bits (128), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 43/139 (30%), Positives = 61/139 (43%), Gaps = 16/139 (11%)

Query: 15  RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74
           +R  AR  A+QAL+QID+      E I            E+D           + R ++ 
Sbjct: 2   KRHEAREKALQALFQIDVGHIPPDEAIG-----NVTGSGEVD----------PFLRQLVF 46

Query: 75  GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134
            V++ +  ID L+ S L EKW   R+  +   ILR    E+     VPV V + E V +A
Sbjct: 47  DVIEHRAEIDELLRSNL-EKWKLERVANVDRVILRMATYEMKYVDDVPVSVSLDEAVELA 105

Query: 135 HDFFYGDEPKFINAVLDKV 153
             F       F+N VL KV
Sbjct: 106 KKFGDWKSGSFVNGVLSKV 124


>gi|16763798|ref|NP_459413.1| transcription antitermination protein NusB [Salmonella enterica
           subsp. enterica serovar Typhimurium str. LT2]
 gi|56414427|ref|YP_151502.1| transcription antitermination protein NusB [Salmonella enterica
           subsp. enterica serovar Paratyphi A str. ATCC 9150]
 gi|62179029|ref|YP_215446.1| transcription antitermination protein NusB [Salmonella enterica
           subsp. enterica serovar Choleraesuis str. SC-B67]
 gi|157146968|ref|YP_001454287.1| transcription antitermination protein NusB [Citrobacter koseri ATCC
           BAA-895]
 gi|161504397|ref|YP_001571509.1| transcription antitermination protein NusB [Salmonella enterica
           subsp. arizonae serovar 62:z4,z23:-- str. RSK2980]
 gi|161615394|ref|YP_001589359.1| transcription antitermination protein NusB [Salmonella enterica
           subsp. enterica serovar Paratyphi B str. SPB7]
 gi|167551771|ref|ZP_02345524.1| transcription termination/antitermination factor NusB [Salmonella
           enterica subsp. enterica serovar Saintpaul str. SARA29]
 gi|167992268|ref|ZP_02573366.1| transcription termination/antitermination factor NusB [Salmonella
           enterica subsp. enterica serovar 4,[5],12:i:- str.
           CVM23701]
 gi|168232391|ref|ZP_02657449.1| transcription termination/antitermination factor NusB [Salmonella
           enterica subsp. enterica serovar Kentucky str. CDC 191]
 gi|168237531|ref|ZP_02662589.1| transcription termination/antitermination factor NusB [Salmonella
           enterica subsp. enterica serovar Schwarzengrund str.
           SL480]
 gi|168240241|ref|ZP_02665173.1| transcription termination/antitermination factor NusB [Salmonella
           enterica subsp. enterica serovar Heidelberg str. SL486]
 gi|168261149|ref|ZP_02683122.1| transcription termination/antitermination factor NusB [Salmonella
           enterica subsp. enterica serovar Hadar str. RI_05P066]
 gi|168465508|ref|ZP_02699390.1| transcription termination/antitermination factor NusB [Salmonella
           enterica subsp. enterica serovar Newport str. SL317]
 gi|168818971|ref|ZP_02830971.1| transcription termination/antitermination factor NusB [Salmonella
           enterica subsp. enterica serovar Weltevreden str.
           HI_N05-537]
 gi|194445003|ref|YP_002039660.1| transcription antitermination protein NusB [Salmonella enterica
           subsp. enterica serovar Newport str. SL254]
 gi|194449230|ref|YP_002044453.1| transcription antitermination protein NusB [Salmonella enterica
           subsp. enterica serovar Heidelberg str. SL476]
 gi|194470791|ref|ZP_03076775.1| transcription termination/antitermination factor NusB [Salmonella
           enterica subsp. enterica serovar Kentucky str. CVM29188]
 gi|194735835|ref|YP_002113451.1| transcription antitermination protein NusB [Salmonella enterica
           subsp. enterica serovar Schwarzengrund str. CVM19633]
 gi|197249816|ref|YP_002145400.1| transcription antitermination protein NusB [Salmonella enterica
           subsp. enterica serovar Agona str. SL483]
 gi|197265909|ref|ZP_03165983.1| transcription termination/antitermination factor NusB [Salmonella
           enterica subsp. enterica serovar Saintpaul str. SARA23]
 gi|197363347|ref|YP_002142984.1| transcription antitermination protein NusB [Salmonella enterica
           subsp. enterica serovar Paratyphi A str. AKU_12601]
 gi|198243030|ref|YP_002214372.1| transcription antitermination protein NusB [Salmonella enterica
           subsp. enterica serovar Dublin str. CT_02021853]
 gi|200390221|ref|ZP_03216832.1| transcription termination/antitermination factor NusB [Salmonella
           enterica subsp. enterica serovar Virchow str. SL491]
 gi|204926733|ref|ZP_03217935.1| transcription termination/antitermination factor NusB [Salmonella
           enterica subsp. enterica serovar Javiana str.
           GA_MM04042433]
 gi|205351729|ref|YP_002225530.1| transcription antitermination protein NusB [Salmonella enterica
           subsp. enterica serovar Gallinarum str. 287/91]
 gi|207855899|ref|YP_002242550.1| transcription antitermination protein NusB [Salmonella enterica
           subsp. enterica serovar Enteritidis str. P125109]
 gi|224582256|ref|YP_002636054.1| transcription antitermination protein NusB [Salmonella enterica
           subsp. enterica serovar Paratyphi C strain RKS4594]
 gi|237730392|ref|ZP_04560873.1| transcription antitermination protein NusB [Citrobacter sp. 30_2]
 gi|238911449|ref|ZP_04655286.1| transcription antitermination protein NusB [Salmonella enterica
           subsp. enterica serovar Tennessee str. CDC07-0191]
 gi|283834267|ref|ZP_06354008.1| transcription antitermination factor NusB [Citrobacter youngae ATCC
           29220]
 gi|22095957|sp|Q8ZRD3|NUSB_SALTY RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|75484594|sp|Q57SE6|NUSB_SALCH RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|81599425|sp|Q5PFS9|NUSB_SALPA RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|166215680|sp|A8AK38|NUSB_CITK8 RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|189035901|sp|A9MM45|NUSB_SALAR RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|189035902|sp|A9MX13|NUSB_SALPB RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|238689944|sp|B5BDB4|NUSB_SALPK RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|238689999|sp|B5EXF9|NUSB_SALA4 RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|238690220|sp|B4T8Q9|NUSB_SALHS RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|238690323|sp|B5FKS3|NUSB_SALDC RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|238690385|sp|B5QTG6|NUSB_SALEP RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|238690477|sp|B5R6R9|NUSB_SALG2 RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|238690694|sp|B4TM98|NUSB_SALSV RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|238693540|sp|B4SWR0|NUSB_SALNS RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|254772653|sp|C0Q7U3|NUSB_SALPC RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|16418923|gb|AAL19372.1| transcription termination; L factor [Salmonella enterica subsp.
           enterica serovar Typhimurium str. LT2]
 gi|56128684|gb|AAV78190.1| N utilization substance protein B [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. ATCC 9150]
 gi|62126662|gb|AAX64365.1| transcription termination; L factor [Salmonella enterica subsp.
           enterica serovar Choleraesuis str. SC-B67]
 gi|157084173|gb|ABV13851.1| hypothetical protein CKO_02745 [Citrobacter koseri ATCC BAA-895]
 gi|160865744|gb|ABX22367.1| hypothetical protein SARI_02508 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
 gi|161364758|gb|ABX68526.1| hypothetical protein SPAB_03165 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|194403666|gb|ACF63888.1| transcription termination/antitermination factor NusB [Salmonella
           enterica subsp. enterica serovar Newport str. SL254]
 gi|194407534|gb|ACF67753.1| transcription termination/antitermination factor NusB [Salmonella
           enterica subsp. enterica serovar Heidelberg str. SL476]
 gi|194457155|gb|EDX45994.1| transcription termination/antitermination factor NusB [Salmonella
           enterica subsp. enterica serovar Kentucky str. CVM29188]
 gi|194711337|gb|ACF90558.1| transcription termination/antitermination factor NusB [Salmonella
           enterica subsp. enterica serovar Schwarzengrund str.
           CVM19633]
 gi|195631893|gb|EDX50413.1| transcription termination/antitermination factor NusB [Salmonella
           enterica subsp. enterica serovar Newport str. SL317]
 gi|197094824|emb|CAR60357.1| N utilization substance protein B [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. AKU_12601]
 gi|197213519|gb|ACH50916.1| transcription termination/antitermination factor NusB [Salmonella
           enterica subsp. enterica serovar Agona str. SL483]
 gi|197244164|gb|EDY26784.1| transcription termination/antitermination factor NusB [Salmonella
           enterica subsp. enterica serovar Saintpaul str. SARA23]
 gi|197289580|gb|EDY28943.1| transcription termination/antitermination factor NusB [Salmonella
           enterica subsp. enterica serovar Schwarzengrund str.
           SL480]
 gi|197937546|gb|ACH74879.1| transcription termination/antitermination factor NusB [Salmonella
           enterica subsp. enterica serovar Dublin str.
           CT_02021853]
 gi|199602666|gb|EDZ01212.1| transcription termination/antitermination factor NusB [Salmonella
           enterica subsp. enterica serovar Virchow str. SL491]
 gi|204323398|gb|EDZ08593.1| transcription termination/antitermination factor NusB [Salmonella
           enterica subsp. enterica serovar Javiana str.
           GA_MM04042433]
 gi|205271510|emb|CAR36328.1| N utilization substance protein B [Salmonella enterica subsp.
           enterica serovar Gallinarum str. 287/91]
 gi|205323516|gb|EDZ11355.1| transcription termination/antitermination factor NusB [Salmonella
           enterica subsp. enterica serovar Saintpaul str. SARA29]
 gi|205329474|gb|EDZ16238.1| transcription termination/antitermination factor NusB [Salmonella
           enterica subsp. enterica serovar 4,[5],12:i:- str.
           CVM23701]
 gi|205333370|gb|EDZ20134.1| transcription termination/antitermination factor NusB [Salmonella
           enterica subsp. enterica serovar Kentucky str. CDC 191]
 gi|205340408|gb|EDZ27172.1| transcription termination/antitermination factor NusB [Salmonella
           enterica subsp. enterica serovar Heidelberg str. SL486]
 gi|205343985|gb|EDZ30749.1| transcription termination/antitermination factor NusB [Salmonella
           enterica subsp. enterica serovar Weltevreden str.
           HI_N05-537]
 gi|205349770|gb|EDZ36401.1| transcription termination/antitermination factor NusB [Salmonella
           enterica subsp. enterica serovar Hadar str. RI_05P066]
 gi|206707702|emb|CAR31986.1| N utilization substance protein B [Salmonella enterica subsp.
           enterica serovar Enteritidis str. P125109]
 gi|224466783|gb|ACN44613.1| transcription antitermination protein NusB [Salmonella enterica
           subsp. enterica serovar Paratyphi C strain RKS4594]
 gi|226905931|gb|EEH91849.1| transcription antitermination protein NusB [Citrobacter sp. 30_2]
 gi|261245701|emb|CBG23497.1| N utilization substance protein B [Salmonella enterica subsp.
           enterica serovar Typhimurium str. D23580]
 gi|267992129|gb|ACY87014.1| transcription antitermination protein NusB [Salmonella enterica
           subsp. enterica serovar Typhimurium str. 14028S]
 gi|291069789|gb|EFE07898.1| transcription antitermination factor NusB [Citrobacter youngae ATCC
           29220]
 gi|301157029|emb|CBW16512.1| N utilization substance protein B [Salmonella enterica subsp.
           enterica serovar Typhimurium str. SL1344]
 gi|312911451|dbj|BAJ35425.1| transcription antitermination protein NusB [Salmonella enterica
           subsp. enterica serovar Typhimurium str. T000240]
 gi|320084694|emb|CBY94485.1| N utilization substance protein B homolog Protein nusB [Salmonella
           enterica subsp. enterica serovar Weltevreden str.
           2007-60-3289-1]
 gi|321225145|gb|EFX50206.1| Transcription termination protein NusB [Salmonella enterica subsp.
           enterica serovar Typhimurium str. TN061786]
 gi|322614698|gb|EFY11627.1| transcription antitermination protein NusB [Salmonella enterica
           subsp. enterica serovar Montevideo str. 315996572]
 gi|322618804|gb|EFY15692.1| transcription antitermination protein NusB [Salmonella enterica
           subsp. enterica serovar Montevideo str. 495297-1]
 gi|322623511|gb|EFY20350.1| transcription antitermination protein NusB [Salmonella enterica
           subsp. enterica serovar Montevideo str. 495297-3]
 gi|322629191|gb|EFY25970.1| transcription antitermination protein NusB [Salmonella enterica
           subsp. enterica serovar Montevideo str. 495297-4]
 gi|322631911|gb|EFY28665.1| transcription antitermination protein NusB [Salmonella enterica
           subsp. enterica serovar Montevideo str. 515920-1]
 gi|322637352|gb|EFY34054.1| transcription antitermination protein NusB [Salmonella enterica
           subsp. enterica serovar Montevideo str. 515920-2]
 gi|322642037|gb|EFY38647.1| transcription antitermination protein NusB [Salmonella enterica
           subsp. enterica serovar Montevideo str. 531954]
 gi|322647856|gb|EFY44331.1| transcription antitermination protein NusB [Salmonella enterica
           subsp. enterica serovar Montevideo str.
           NC_MB110209-0054]
 gi|322652534|gb|EFY48888.1| transcription antitermination protein NusB [Salmonella enterica
           subsp. enterica serovar Montevideo str. OH_2009072675]
 gi|322653304|gb|EFY49637.1| transcription antitermination protein NusB [Salmonella enterica
           subsp. enterica serovar Montevideo str.
           CASC_09SCPH15965]
 gi|322660547|gb|EFY56783.1| transcription antitermination protein NusB [Salmonella enterica
           subsp. enterica serovar Montevideo str. 19N]
 gi|322664699|gb|EFY60892.1| transcription antitermination protein NusB [Salmonella enterica
           subsp. enterica serovar Montevideo str. 81038-01]
 gi|322669248|gb|EFY65398.1| transcription antitermination protein NusB [Salmonella enterica
           subsp. enterica serovar Montevideo str. MD_MDA09249507]
 gi|322670793|gb|EFY66926.1| transcription antitermination protein NusB [Salmonella enterica
           subsp. enterica serovar Montevideo str. 414877]
 gi|322678968|gb|EFY75023.1| transcription antitermination protein NusB [Salmonella enterica
           subsp. enterica serovar Montevideo str. 366867]
 gi|322681996|gb|EFY78021.1| transcription antitermination protein NusB [Salmonella enterica
           subsp. enterica serovar Montevideo str. 413180]
 gi|322685175|gb|EFY81172.1| transcription antitermination protein NusB [Salmonella enterica
           subsp. enterica serovar Montevideo str. 446600]
 gi|322713490|gb|EFZ05061.1| transcription antitermination protein NusB [Salmonella enterica
           subsp. enterica serovar Choleraesuis str. A50]
 gi|323128737|gb|ADX16167.1| transcription antitermination protein NusB [Salmonella enterica
           subsp. enterica serovar Typhimurium str. 4/74]
 gi|323194477|gb|EFZ79672.1| transcription antitermination protein NusB [Salmonella enterica
           subsp. enterica serovar Montevideo str. 609458-1]
 gi|323196986|gb|EFZ82128.1| transcription antitermination protein NusB [Salmonella enterica
           subsp. enterica serovar Montevideo str. 556150-1]
 gi|323203971|gb|EFZ88988.1| transcription antitermination protein NusB [Salmonella enterica
           subsp. enterica serovar Montevideo str. 609460]
 gi|323206944|gb|EFZ91897.1| transcription antitermination protein NusB [Salmonella enterica
           subsp. enterica serovar Montevideo str. 507440-20]
 gi|323210838|gb|EFZ95710.1| transcription antitermination protein NusB [Salmonella enterica
           subsp. enterica serovar Montevideo str. 556152]
 gi|323214529|gb|EFZ99280.1| transcription antitermination protein NusB [Salmonella enterica
           subsp. enterica serovar Montevideo str. MB101509-0077]
 gi|323223086|gb|EGA07429.1| transcription antitermination protein NusB [Salmonella enterica
           subsp. enterica serovar Montevideo str. MB102109-0047]
 gi|323227035|gb|EGA11216.1| transcription antitermination protein NusB [Salmonella enterica
           subsp. enterica serovar Montevideo str. MB110209-0055]
 gi|323230147|gb|EGA14267.1| transcription antitermination protein NusB [Salmonella enterica
           subsp. enterica serovar Montevideo str. MB111609-0052]
 gi|323233885|gb|EGA17974.1| transcription antitermination protein NusB [Salmonella enterica
           subsp. enterica serovar Montevideo str. 2009083312]
 gi|323238421|gb|EGA22479.1| transcription antitermination protein NusB [Salmonella enterica
           subsp. enterica serovar Montevideo str. 2009085258]
 gi|323244109|gb|EGA28118.1| transcription antitermination protein NusB [Salmonella enterica
           subsp. enterica serovar Montevideo str. 315731156]
 gi|323246269|gb|EGA30252.1| transcription antitermination protein NusB [Salmonella enterica
           subsp. enterica serovar Montevideo str. IA_2009159199]
 gi|323251895|gb|EGA35758.1| transcription antitermination protein NusB [Salmonella enterica
           subsp. enterica serovar Montevideo str. IA_2010008282]
 gi|323257892|gb|EGA41571.1| transcription antitermination protein NusB [Salmonella enterica
           subsp. enterica serovar Montevideo str. IA_2010008283]
 gi|323261095|gb|EGA44687.1| transcription antitermination protein NusB [Salmonella enterica
           subsp. enterica serovar Montevideo str. IA_2010008284]
 gi|323264975|gb|EGA48474.1| transcription antitermination protein NusB [Salmonella enterica
           subsp. enterica serovar Montevideo str. IA_2010008285]
 gi|323272538|gb|EGA55945.1| transcription antitermination protein NusB [Salmonella enterica
           subsp. enterica serovar Montevideo str. IA_2010008287]
 gi|326622120|gb|EGE28465.1| transcription antitermination protein NusB [Salmonella enterica
           subsp. enterica serovar Dublin str. 3246]
 gi|326626764|gb|EGE33107.1| transcription antitermination protein NusB [Salmonella enterica
           subsp. enterica serovar Gallinarum str. 9]
 gi|332987366|gb|AEF06349.1| transcription antitermination protein NusB [Salmonella enterica
           subsp. enterica serovar Typhimurium str. UK-1]
          Length = 139

 Score = 53.9 bits (128), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 41/132 (31%), Positives = 65/132 (49%), Gaps = 13/132 (9%)

Query: 23  AVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQH 82
           AVQALY   +      ++      Y+F A  E DV+ V    D+ +FR ++ GV     +
Sbjct: 13  AVQALYSWQLSQNDIADV-----EYQFLA--EQDVKDV----DVLYFRELLSGVATNSAY 61

Query: 83  IDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDE 142
           +D L+   L+       L  +  ++LR  + EL +   VP +V I+E + +A  F   D 
Sbjct: 62  LDGLMKPYLSR--LLEELGQVEKAVLRIALFELSKRSDVPYKVAINEAIELAKTFGAEDS 119

Query: 143 PKFINAVLDKVS 154
            KF+N VLDK +
Sbjct: 120 HKFVNGVLDKAA 131


>gi|315108679|gb|EFT80655.1| transcription antitermination factor NusB [Propionibacterium acnes
           HL030PA2]
          Length = 261

 Score = 53.9 bits (128), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 32/138 (23%), Positives = 65/138 (47%), Gaps = 14/138 (10%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           R  AR  A+  L++ D+IG    E+++                 V+ +    +   ++ G
Sbjct: 39  RSKARKQALDILFEADLIGTDPLEVLAARP-------------GVFTNPVRPFAADLVRG 85

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
           V   +  +D +++ CL+E W+ +R+  +   + R GV E++   + P   +ISE + ++ 
Sbjct: 86  VAATQVGLDSVLTDCLSEGWTLARMPRVDRILARLGVFEILHTDT-PNPAVISEAIELSE 144

Query: 136 DFFYGDEPKFINAVLDKV 153
           +F   D   F+N +L  V
Sbjct: 145 EFSTDDSAPFLNGLLGAV 162


>gi|119356339|ref|YP_910983.1| NusB antitermination factor [Chlorobium phaeobacteroides DSM 266]
 gi|166215679|sp|A1BDT2|NUSB_CHLPD RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|119353688|gb|ABL64559.1| NusB antitermination factor [Chlorobium phaeobacteroides DSM 266]
          Length = 165

 Score = 53.9 bits (128), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 41/154 (26%), Positives = 77/154 (50%), Gaps = 15/154 (9%)

Query: 13  SHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVI 72
           ++RR I R   +QALY +++        I     +    + + D  +      +++F ++
Sbjct: 3   TYRRQI-REKILQALYTLELRDTD----IESAANWLLTKEIQEDPNA------MKFFNLL 51

Query: 73  IHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVC 132
           +  + + ++ ID  I+   T  W  SR+ +I  +ILR  + EL+ C  +P +V I+E + 
Sbjct: 52  LKNIKEHREEIDQYIARH-TFNWDMSRIAIIDKNILRMALAELLYCEDIPPKVSINEAIE 110

Query: 133 IAHDFFYGDE-PKFINAVLDKVSRKEEIKRSGCV 165
           IA  F   D+  KF+N +LD +    E+K  G +
Sbjct: 111 IAKKFSSTDKSSKFVNGILDAIFN--ELKAEGKI 142


>gi|239993724|ref|ZP_04714248.1| transcription antitermination protein NusB [Alteromonas macleodii
           ATCC 27126]
          Length = 140

 Score = 53.9 bits (128), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 34/92 (36%), Positives = 45/92 (48%), Gaps = 2/92 (2%)

Query: 64  VDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPV 123
           VD+ +F+ ++ GV      +D  I   L        LD I  +ILR   LEL E   VP 
Sbjct: 43  VDMAYFQALLRGVAHNASKLDTTIKPYLGR--LPEELDAIEKAILRIATLELTERIDVPY 100

Query: 124 EVIISEYVCIAHDFFYGDEPKFINAVLDKVSR 155
            VII+E + +A  F   +  KFIN  LDK  R
Sbjct: 101 RVIINEAIELAKAFGAEESHKFINGALDKAVR 132


>gi|150020739|ref|YP_001306093.1| transcription antitermination protein NusB [Thermosipho
           melanesiensis BI429]
 gi|166215726|sp|A6LLA7|NUSB_THEM4 RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|149793260|gb|ABR30708.1| NusB antitermination factor [Thermosipho melanesiensis BI429]
          Length = 141

 Score = 53.9 bits (128), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 29/88 (32%), Positives = 48/88 (54%), Gaps = 1/88 (1%)

Query: 73  IHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVC 132
           + G+ +    ID +IS  L + W+  RL +   +ILR G  ELI    +P+EV + E + 
Sbjct: 50  LKGIRENIDVIDEIISKYL-KNWTLERLSVTDRNILRLGTYELIYVDDIPIEVTLDEMIE 108

Query: 133 IAHDFFYGDEPKFINAVLDKVSRKEEIK 160
           +   +   +  KF+N VLDK+++ E  K
Sbjct: 109 LGKTYGTENSGKFVNGVLDKIAKAEAPK 136


>gi|94968243|ref|YP_590291.1| NusB antitermination factor [Candidatus Koribacter versatilis
           Ellin345]
 gi|119372272|sp|Q1ISD3|NUSB_ACIBL RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|94550293|gb|ABF40217.1| NusB antitermination factor [Candidatus Koribacter versatilis
           Ellin345]
          Length = 146

 Score = 53.9 bits (128), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 44/146 (30%), Positives = 67/146 (45%), Gaps = 11/146 (7%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           R  +R  A+Q L+Q+D+   S   +   +   R   D E +V S    +DL       H 
Sbjct: 8   RRKSRELALQMLFQMDMGKQSADHVEKTFWAER--KDLEEEVRS--FAIDL------FHV 57

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
              R + ID LI     E W   R+  +  +ILR    E +     P  V+I+E + IA 
Sbjct: 58  AEKRSEEIDKLIEKH-AEHWRMERMAAVDRNILRGACAEFMGFPKTPKPVVINESLEIAR 116

Query: 136 DFFYGDEPKFINAVLDKVSRKEEIKR 161
            F   +  +FIN VLD V+R+ + +R
Sbjct: 117 RFSSPESVQFINGVLDSVARELDAER 142


>gi|332141882|ref|YP_004427620.1| transcription antitermination protein NusB [Alteromonas macleodii
           str. 'Deep ecotype']
 gi|238693257|sp|B4RVY5|NUSB_ALTMD RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|327551904|gb|AEA98622.1| transcription antitermination protein NusB [Alteromonas macleodii
           str. 'Deep ecotype']
          Length = 140

 Score = 53.9 bits (128), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 34/92 (36%), Positives = 45/92 (48%), Gaps = 2/92 (2%)

Query: 64  VDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPV 123
           VD+ +F+ ++ GV      +D  I   L        LD I  +ILR   LEL E   VP 
Sbjct: 43  VDMAYFQALLRGVAHNASKLDATIKPYLGR--LPEELDAIEKAILRIATLELTERIDVPY 100

Query: 124 EVIISEYVCIAHDFFYGDEPKFINAVLDKVSR 155
            VII+E + +A  F   +  KFIN  LDK  R
Sbjct: 101 RVIINEAIELAKAFGAEESHKFINGALDKAVR 132


>gi|312866399|ref|ZP_07726617.1| transcription antitermination factor NusB [Streptococcus downei
           F0415]
 gi|311098093|gb|EFQ56319.1| transcription antitermination factor NusB [Streptococcus downei
           F0415]
          Length = 139

 Score = 53.9 bits (128), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 28/81 (34%), Positives = 42/81 (51%)

Query: 72  IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
           ++ G +D    ID LIS  L EKWS  RL +   S+LR G+ E+      P +V ++E +
Sbjct: 55  LVKGTVDNLTEIDGLISENLKEKWSLERLTLTDRSLLRLGLYEIKYHEETPAKVALNEVI 114

Query: 132 CIAHDFFYGDEPKFINAVLDK 152
            +   +      KFIN +L K
Sbjct: 115 ELTKAYSDQTSAKFINGILTK 135


>gi|219684900|ref|ZP_03539842.1| transcription antitermination factor NusB [Borrelia garinii PBr]
 gi|219671845|gb|EED28900.1| transcription antitermination factor NusB [Borrelia garinii PBr]
          Length = 145

 Score = 53.9 bits (128), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 38/140 (27%), Positives = 67/140 (47%), Gaps = 9/140 (6%)

Query: 20  RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79
           R+ A Q +Y IDI   +  +I   +       D  LD+E+  +     ++  +++G  + 
Sbjct: 8   RVLAFQKIYSIDINQSAMDDIFDIFT----IEDKGLDIENESIK---SFYSSLVNGTFNN 60

Query: 80  KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLEL-IECHSVPVEVIISEYVCIAHDFF 138
            ++ID LI   ++  WS  R+D +  +ILR GV  L  +        +I E + IA  + 
Sbjct: 61  LEYIDNLIRD-ISWNWSLDRMDKVDLAILRMGVYSLKFQNFENSKRALIDEAILIAKKYG 119

Query: 139 YGDEPKFINAVLDKVSRKEE 158
             +  KFIN +LD + +  E
Sbjct: 120 SKNSDKFINGILDALLKNME 139


>gi|187734931|ref|YP_001877043.1| NusB antitermination factor [Akkermansia muciniphila ATCC BAA-835]
 gi|187424983|gb|ACD04262.1| NusB antitermination factor [Akkermansia muciniphila ATCC BAA-835]
          Length = 294

 Score = 53.9 bits (128), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 30/100 (30%), Positives = 51/100 (51%), Gaps = 6/100 (6%)

Query: 56  DVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLEL 115
           D E +Y        + +   ++ R+  +D  I S L E +S  R+  I  +ILR G  EL
Sbjct: 196 DAEELYREA-----KTLGEDILRRRDGLDAAIDSTL-ENYSPERVSAIDRAILRLGAYEL 249

Query: 116 IECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSR 155
           +    +P  ++ISE + ++  F   + P+FIN VL  +S+
Sbjct: 250 LHRKDLPAPIVISEAIRLSERFSSAESPRFINGVLAGISK 289


>gi|225551926|ref|ZP_03772866.1| transcription antitermination factor NusB [Borrelia sp. SV1]
 gi|225370924|gb|EEH00354.1| transcription antitermination factor NusB [Borrelia sp. SV1]
          Length = 145

 Score = 53.9 bits (128), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 39/140 (27%), Positives = 66/140 (47%), Gaps = 9/140 (6%)

Query: 20  RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79
           R+ A Q +Y IDI   +  +I   +       D  LD+E+  +     ++  ++ G  + 
Sbjct: 8   RVLAFQKIYSIDINQSAMDDIFDIFN----IEDKGLDIENESIK---SFYSSLVIGTFNN 60

Query: 80  KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLEL-IECHSVPVEVIISEYVCIAHDFF 138
            +HID LI   ++  WS  R+D +  +ILR GV  L  +        +I E + IA  + 
Sbjct: 61  LEHIDSLIRD-ISLNWSLERMDKVDLAILRMGVYSLKFQNFENSKRAVIDEAILIAKKYG 119

Query: 139 YGDEPKFINAVLDKVSRKEE 158
             +  KFIN +LD + +  E
Sbjct: 120 SKNSYKFINGILDALLKNME 139


>gi|26522749|dbj|BAC44853.1| NusB protein [Photobacterium phosphoreum]
          Length = 157

 Score = 53.9 bits (128), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 43/152 (28%), Positives = 71/152 (46%), Gaps = 14/152 (9%)

Query: 10  LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVY-------L 62
           +K + RR  AR  AVQA+Y   +   +  +I    E Y    D   + E           
Sbjct: 5   VKPAARRN-ARQFAVQAIYSWQLTKGNVADI----EQYFLSGDKFEEEEHQADAPVCKAP 59

Query: 63  HVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVP 122
             D+ +FR +  GV+   Q +D  +   L+       LD +  ++LR  + E+++   VP
Sbjct: 60  DTDVSYFRDLFAGVVLSHQELDSKMRPYLSR--PLQDLDQMELALLRLAMYEMVKREDVP 117

Query: 123 VEVIISEYVCIAHDFFYGDEPKFINAVLDKVS 154
            +V+I+E + +A  F   D  KF+N VLDK +
Sbjct: 118 FKVVINEAIELAKLFGAEDSHKFVNGVLDKAA 149


>gi|302550131|ref|ZP_07302473.1| transcription antitermination factor NusB [Streptomyces
           viridochromogenes DSM 40736]
 gi|302467749|gb|EFL30842.1| transcription antitermination factor NusB [Streptomyces
           viridochromogenes DSM 40736]
          Length = 144

 Score = 53.9 bits (128), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 38/139 (27%), Positives = 65/139 (46%), Gaps = 11/139 (7%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFC-ADTELDVESVYLHVDLEWFRVIIH 74
           R  AR  A Q L++ D  G     +++++   R   ADT     S Y          ++ 
Sbjct: 4   RNTARKRAFQILFEGDQRGAEALTVLADW--VRLSRADTRQPPVSEYTME-------LVE 54

Query: 75  GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134
           G     + ID LI+   +  W+  R+ ++  +ILR G  ELI   + P  V++ E V +A
Sbjct: 55  GYAKHAKRIDELIAQY-SVGWTLDRMPVVDRNILRLGAYELIWVDATPDAVVLDEMVQLA 113

Query: 135 HDFFYGDEPKFINAVLDKV 153
            +F   + P F+N +L ++
Sbjct: 114 KEFSTDESPSFVNGLLGRL 132


>gi|219685303|ref|ZP_03540122.1| transcription antitermination factor NusB [Borrelia garinii Far04]
 gi|219673076|gb|EED30096.1| transcription antitermination factor NusB [Borrelia garinii Far04]
          Length = 142

 Score = 53.5 bits (127), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 38/140 (27%), Positives = 67/140 (47%), Gaps = 9/140 (6%)

Query: 20  RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79
           R+ A Q +Y IDI   +  +I   +       D  LD+E+  +     ++  +++G  + 
Sbjct: 5   RVLAFQKIYSIDINQSAMDDIFDIFT----IEDKGLDIENESIK---SFYSSLVNGTFNN 57

Query: 80  KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLEL-IECHSVPVEVIISEYVCIAHDFF 138
            ++ID LI   ++  WS  R+D +  +ILR GV  L  +        +I E + IA  + 
Sbjct: 58  LEYIDNLIRD-ISWNWSLDRMDKVDLAILRMGVYSLKFQNFENSKRALIDEAILIAKKYG 116

Query: 139 YGDEPKFINAVLDKVSRKEE 158
             +  KFIN +LD + +  E
Sbjct: 117 SKNSDKFINGILDALLKNME 136


>gi|183221521|ref|YP_001839517.1| transcription antitermination protein NusB [Leptospira biflexa
           serovar Patoc strain 'Patoc 1 (Paris)']
 gi|189911605|ref|YP_001963160.1| transcription antitermination protein NusB [Leptospira biflexa
           serovar Patoc strain 'Patoc 1 (Ames)']
 gi|238687781|sp|B0SB76|NUSB_LEPBA RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|238687828|sp|B0ST01|NUSB_LEPBP RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|167776281|gb|ABZ94582.1| Transcription antitermination protein [Leptospira biflexa serovar
           Patoc strain 'Patoc 1 (Ames)']
 gi|167779943|gb|ABZ98241.1| N utilization substance protein B-like protein (Protein NusB); L
           factor [Leptospira biflexa serovar Patoc strain 'Patoc 1
           (Paris)']
          Length = 140

 Score = 53.5 bits (127), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 42/145 (28%), Positives = 71/145 (48%), Gaps = 14/145 (9%)

Query: 13  SHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVI 72
           S  RG  R  A+  LYQID++G      + +++ Y      E    +V+L          
Sbjct: 3   SRHRG--RSLALMCLYQIDLVGTDPDRAM-KFDWYDKKITREEKDYAVFL---------- 49

Query: 73  IHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVC 132
           + GV++ ++ ID LI    +E W  SR+ ++   ILR  +L L +   +   V+I+E V 
Sbjct: 50  VKGVVENRKAIDTLIKK-YSENWELSRISVVNRCILRLSILSLQKEPFLAAPVVINEAVE 108

Query: 133 IAHDFFYGDEPKFINAVLDKVSRKE 157
           +  +F   +  +FIN +LD   +KE
Sbjct: 109 LTKEFETEESAQFINGLLDAFYKKE 133


>gi|320105797|ref|YP_004181387.1| NusB antitermination factor [Terriglobus saanensis SP1PR4]
 gi|319924318|gb|ADV81393.1| NusB antitermination factor [Terriglobus saanensis SP1PR4]
          Length = 146

 Score = 53.5 bits (127), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 41/148 (27%), Positives = 70/148 (47%), Gaps = 9/148 (6%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRF--CADTELDVESVYLHVDLEWFRVII 73
           R  +R  A+Q L+Q D+   S+ ++   +   R        +D ++     DL  FRV  
Sbjct: 4   RRKSRELAMQMLFQADLGKQSSEDVQKSFWNAREDEAGKATIDADTQGFAEDL--FRV-- 59

Query: 74  HGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCI 133
              M +++ ID L+     + W  +R+  +  ++LR  V E+I   S P  +II+E + I
Sbjct: 60  --AMVKQEEIDTLLEEH-AQNWRVARMAAVDRNLLRMAVAEMIGYPSTPHPIIINEALEI 116

Query: 134 AHDFFYGDEPKFINAVLDKVSRKEEIKR 161
              +   +   F+N VLD V+R    KR
Sbjct: 117 GRRYAAPESVNFLNGVLDAVARALMAKR 144


>gi|238021694|ref|ZP_04602120.1| hypothetical protein GCWU000324_01597 [Kingella oralis ATCC 51147]
 gi|237866308|gb|EEP67350.1| hypothetical protein GCWU000324_01597 [Kingella oralis ATCC 51147]
          Length = 145

 Score = 53.5 bits (127), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 45/147 (30%), Positives = 64/147 (43%), Gaps = 20/147 (13%)

Query: 10  LKLSHRRGIARLAAVQALYQIDIIGCSTTEI---ISEYETYRFCADTELDVESVYLHVDL 66
           +++S RR  AR  AVQALYQ+ +      E+   I E   YR              H D 
Sbjct: 1   MRVSPRRR-AREFAVQALYQVALNKIPAPEVAQHIRESNDYR--------------HADG 45

Query: 67  EWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVI 126
           E F  I  G  + ++    +I   L    +   ++ I  S+L   V EL      P  VI
Sbjct: 46  ELFTAIFFGAHNNQREYMQIIRPLLDRDENL--INPIERSVLLVAVHELKAMPETPYPVI 103

Query: 127 ISEYVCIAHDFFYGDEPKFINAVLDKV 153
           I+E + +   F   D  KFIN +LDK+
Sbjct: 104 INEAIEVTKTFGGTDSHKFINGILDKL 130


>gi|22124909|ref|NP_668332.1| transcription antitermination protein NusB [Yersinia pestis KIM 10]
 gi|45440599|ref|NP_992138.1| transcription antitermination protein NusB [Yersinia pestis biovar
           Microtus str. 91001]
 gi|51595286|ref|YP_069477.1| transcription antitermination protein NusB [Yersinia
           pseudotuberculosis IP 32953]
 gi|108808666|ref|YP_652582.1| transcription antitermination protein NusB [Yersinia pestis
           Antiqua]
 gi|108811072|ref|YP_646839.1| transcription antitermination protein NusB [Yersinia pestis
           Nepal516]
 gi|145600075|ref|YP_001164151.1| transcription antitermination protein NusB [Yersinia pestis
           Pestoides F]
 gi|149364973|ref|ZP_01887008.1| N utilization substance protein B [Yersinia pestis CA88-4125]
 gi|153950126|ref|YP_001402075.1| transcription antitermination protein NusB [Yersinia
           pseudotuberculosis IP 31758]
 gi|162421924|ref|YP_001607525.1| transcription antitermination protein NusB [Yersinia pestis Angola]
 gi|165926545|ref|ZP_02222377.1| transcription antitermination factor NusB [Yersinia pestis biovar
           Orientalis str. F1991016]
 gi|165935993|ref|ZP_02224563.1| transcription antitermination factor NusB [Yersinia pestis biovar
           Orientalis str. IP275]
 gi|166011125|ref|ZP_02232023.1| transcription antitermination factor NusB [Yersinia pestis biovar
           Antiqua str. E1979001]
 gi|166212965|ref|ZP_02239000.1| transcription antitermination factor NusB [Yersinia pestis biovar
           Antiqua str. B42003004]
 gi|167398502|ref|ZP_02304026.1| transcription antitermination factor NusB [Yersinia pestis biovar
           Antiqua str. UG05-0454]
 gi|167421645|ref|ZP_02313398.1| transcription antitermination factor NusB [Yersinia pestis biovar
           Orientalis str. MG05-1020]
 gi|167423478|ref|ZP_02315231.1| transcription antitermination factor NusB [Yersinia pestis biovar
           Mediaevalis str. K1973002]
 gi|170025473|ref|YP_001721978.1| transcription antitermination protein NusB [Yersinia
           pseudotuberculosis YPIII]
 gi|186894303|ref|YP_001871415.1| transcription antitermination protein NusB [Yersinia
           pseudotuberculosis PB1/+]
 gi|218930211|ref|YP_002348086.1| transcription antitermination protein NusB [Yersinia pestis CO92]
 gi|229838786|ref|ZP_04458945.1| transcription antitermination protein [Yersinia pestis biovar
           Orientalis str. PEXU2]
 gi|229896060|ref|ZP_04511230.1| transcription antitermination protein [Yersinia pestis Pestoides A]
 gi|229899354|ref|ZP_04514497.1| transcription antitermination protein [Yersinia pestis biovar
           Orientalis str. India 195]
 gi|229901299|ref|ZP_04516421.1| transcription antitermination protein [Yersinia pestis Nepal516]
 gi|270489488|ref|ZP_06206562.1| transcription antitermination factor NusB [Yersinia pestis KIM D27]
 gi|294504909|ref|YP_003568971.1| transcription antitermination protein NusB [Yersinia pestis
           Z176003]
 gi|22095956|sp|Q8ZC42|NUSB_YERPE RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|81640219|sp|Q66DV7|NUSB_YERPS RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|119390849|sp|Q1C4I5|NUSB_YERPA RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|119390850|sp|Q1CL91|NUSB_YERPN RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|166215730|sp|A4TPG6|NUSB_YERPP RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|166918813|sp|A7FLE7|NUSB_YERP3 RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|238687286|sp|A9R2J9|NUSB_YERPG RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|238688409|sp|B1JIE1|NUSB_YERPY RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|238691415|sp|B2K6T4|NUSB_YERPB RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|21957745|gb|AAM84583.1|AE013703_13 transcription termination; L factor [Yersinia pestis KIM 10]
 gi|45435456|gb|AAS61015.1| N utilization substance protein B [Yersinia pestis biovar Microtus
           str. 91001]
 gi|51588568|emb|CAH20176.1| transcription termination; L factor [Yersinia pseudotuberculosis IP
           32953]
 gi|108774720|gb|ABG17239.1| N utilization substance protein B [Yersinia pestis Nepal516]
 gi|108780579|gb|ABG14637.1| N utilization substance protein B [Yersinia pestis Antiqua]
 gi|115348822|emb|CAL21776.1| N utilization substance protein B [Yersinia pestis CO92]
 gi|145211771|gb|ABP41178.1| N utilization substance protein B [Yersinia pestis Pestoides F]
 gi|149291386|gb|EDM41460.1| N utilization substance protein B [Yersinia pestis CA88-4125]
 gi|152961621|gb|ABS49082.1| transcription antitermination factor NusB [Yersinia
           pseudotuberculosis IP 31758]
 gi|162354739|gb|ABX88687.1| transcription antitermination factor NusB [Yersinia pestis Angola]
 gi|165916138|gb|EDR34745.1| transcription antitermination factor NusB [Yersinia pestis biovar
           Orientalis str. IP275]
 gi|165921473|gb|EDR38670.1| transcription antitermination factor NusB [Yersinia pestis biovar
           Orientalis str. F1991016]
 gi|165990125|gb|EDR42426.1| transcription antitermination factor NusB [Yersinia pestis biovar
           Antiqua str. E1979001]
 gi|166205752|gb|EDR50232.1| transcription antitermination factor NusB [Yersinia pestis biovar
           Antiqua str. B42003004]
 gi|166960564|gb|EDR56585.1| transcription antitermination factor NusB [Yersinia pestis biovar
           Orientalis str. MG05-1020]
 gi|167051006|gb|EDR62414.1| transcription antitermination factor NusB [Yersinia pestis biovar
           Antiqua str. UG05-0454]
 gi|167057648|gb|EDR67394.1| transcription antitermination factor NusB [Yersinia pestis biovar
           Mediaevalis str. K1973002]
 gi|169752007|gb|ACA69525.1| NusB antitermination factor [Yersinia pseudotuberculosis YPIII]
 gi|186697329|gb|ACC87958.1| NusB antitermination factor [Yersinia pseudotuberculosis PB1/+]
 gi|229681228|gb|EEO77322.1| transcription antitermination protein [Yersinia pestis Nepal516]
 gi|229687756|gb|EEO79829.1| transcription antitermination protein [Yersinia pestis biovar
           Orientalis str. India 195]
 gi|229695152|gb|EEO85199.1| transcription antitermination protein [Yersinia pestis biovar
           Orientalis str. PEXU2]
 gi|229700983|gb|EEO89012.1| transcription antitermination protein [Yersinia pestis Pestoides A]
 gi|262362975|gb|ACY59696.1| transcription antitermination protein NusB [Yersinia pestis
           D106004]
 gi|262366895|gb|ACY63452.1| transcription antitermination protein NusB [Yersinia pestis
           D182038]
 gi|270337992|gb|EFA48769.1| transcription antitermination factor NusB [Yersinia pestis KIM D27]
 gi|294355368|gb|ADE65709.1| transcription antitermination protein NusB [Yersinia pestis
           Z176003]
 gi|320016368|gb|ADV99939.1| transcription antitermination protein [Yersinia pestis biovar
           Medievalis str. Harbin 35]
          Length = 138

 Score = 53.5 bits (127), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 43/134 (32%), Positives = 65/134 (48%), Gaps = 17/134 (12%)

Query: 23  AVQALYQIDIIGCSTTEIISEYETYRFCADTELDV--ESVYLHVDLEWFRVIIHGVMDRK 80
           AVQALY   +   S  +I          AD EL    E     VD+ +FR ++ GV    
Sbjct: 13  AVQALYSWQL---SKNDI----------ADVELQFLSEQDVKDVDIAYFRELLSGVAVNA 59

Query: 81  QHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYG 140
             +D L++  L+ +     L  +  ++LR  + EL +   VP +V I+E + +A  F   
Sbjct: 60  ASLDALMAPFLSRQ--LEELGQVERAVLRIALFELSKRDDVPYKVAINEAIELAKTFGAE 117

Query: 141 DEPKFINAVLDKVS 154
           D  KF+N VLDKV+
Sbjct: 118 DSHKFVNGVLDKVA 131


>gi|307326792|ref|ZP_07605984.1| NusB antitermination factor [Streptomyces violaceusniger Tu 4113]
 gi|306887555|gb|EFN18549.1| NusB antitermination factor [Streptomyces violaceusniger Tu 4113]
          Length = 150

 Score = 53.5 bits (127), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 35/139 (25%), Positives = 62/139 (44%), Gaps = 9/139 (6%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           R  AR  A Q L++ D  G +   +++++       D +  V    +         ++ G
Sbjct: 4   RNKARKRAFQILFEADQRGATVQIVLADWIRLARTDDRQPPVSEYTMQ--------LVEG 55

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
                  ID LI++     W+  R+ ++  +ILR G  EL+     P  V+I E V +A 
Sbjct: 56  YAQHIDRIDELIATYAV-GWTLDRMPVVDRNILRLGAYELVWEDETPDAVVIDEAVQLAK 114

Query: 136 DFFYGDEPKFINAVLDKVS 154
           +F   D P F+N +L ++ 
Sbjct: 115 EFSTDDSPAFVNGLLGRIK 133


>gi|110597193|ref|ZP_01385482.1| transcription antitermination factor NusB [Chlorobium ferrooxidans
           DSM 13031]
 gi|110341384|gb|EAT59849.1| transcription antitermination factor NusB [Chlorobium ferrooxidans
           DSM 13031]
          Length = 191

 Score = 53.5 bits (127), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 44/162 (27%), Positives = 79/162 (48%), Gaps = 31/162 (19%)

Query: 13  SHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVD------- 65
           ++RR I R   +QALY I+I                   +T++D  + +L          
Sbjct: 30  TYRRQI-REKILQALYTIEI------------------RETDIDSAAGWLLTQEILDDAN 70

Query: 66  -LEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVE 124
            +++F +++  + + ++ ID  I+   T  W  SR+ +I  +ILR  + E++ C  +P +
Sbjct: 71  AMKFFNLLLKSIKENREEIDRYIAKH-TFNWDMSRIAIIDKNILRMALAEILYCEDIPPK 129

Query: 125 VIISEYVCIAHDFFYGDE-PKFINAVLDKVSRKEEIKRSGCV 165
           V I+E + IA  F   D+  KF+N +LD +    E+K  G V
Sbjct: 130 VSINEAIEIAKKFTSTDKSSKFVNGILDAIF--NELKAEGKV 169


>gi|293392266|ref|ZP_06636600.1| transcription antitermination factor NusB [Aggregatibacter
           actinomycetemcomitans D7S-1]
 gi|290952800|gb|EFE02919.1| transcription antitermination factor NusB [Aggregatibacter
           actinomycetemcomitans D7S-1]
          Length = 141

 Score = 53.5 bits (127), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 48/144 (33%), Positives = 73/144 (50%), Gaps = 14/144 (9%)

Query: 11  KLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFR 70
           K+S RR  AR  AVQALY    I  ++ EI+       F   TE D++ V    D  +FR
Sbjct: 7   KISPRRR-ARECAVQALYSW-AISKNSPEIVE----LNFI--TEQDMKGV----DTPYFR 54

Query: 71  VIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEY 130
            +    ++  + +D  +   L    +   LD I  +ILR  V EL    +VP +V+I+E 
Sbjct: 55  KLFRQTVENVEAVDATMQYYLDR--TLEELDPIEKAILRLAVYELQFEANVPYKVVINEA 112

Query: 131 VCIAHDFFYGDEPKFINAVLDKVS 154
           + +A  F   +  K+IN VLDK++
Sbjct: 113 IEVAKVFGADESHKYINGVLDKIA 136


>gi|271499577|ref|YP_003332602.1| NusB antitermination factor [Dickeya dadantii Ech586]
 gi|270343132|gb|ACZ75897.1| NusB antitermination factor [Dickeya dadantii Ech586]
          Length = 139

 Score = 53.5 bits (127), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 43/134 (32%), Positives = 65/134 (48%), Gaps = 17/134 (12%)

Query: 23  AVQALYQIDIIGCSTTEIISEYETYRFCADTELDV--ESVYLHVDLEWFRVIIHGVMDRK 80
           AVQALY   +   S  +I          AD EL    E     VD+ +FR ++ GV  + 
Sbjct: 13  AVQALYSWQL---SKNDI----------ADVELQFLSEQDVKGVDIAYFRELLAGVATQA 59

Query: 81  QHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYG 140
           + +D  ++  L+ +   + L  +  +ILR  V EL +   VP +V I+E + +A  F   
Sbjct: 60  EKLDAQMAPYLSRQ--LNELGQVERAILRLAVYELSKREDVPYKVAINEAIELAKVFGAE 117

Query: 141 DEPKFINAVLDKVS 154
           D  KF+N VLDK  
Sbjct: 118 DSHKFVNGVLDKAG 131


>gi|242240313|ref|YP_002988494.1| transcription antitermination protein NusB [Dickeya dadantii
           Ech703]
 gi|242132370|gb|ACS86672.1| NusB antitermination factor [Dickeya dadantii Ech703]
          Length = 139

 Score = 53.5 bits (127), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 43/134 (32%), Positives = 64/134 (47%), Gaps = 17/134 (12%)

Query: 23  AVQALYQIDIIGCSTTEIISEYETYRFCADTELDV--ESVYLHVDLEWFRVIIHGVMDRK 80
           AVQALY   +   S  +I          AD EL    E      D+ +FR ++ GV  + 
Sbjct: 13  AVQALYSWQL---SKNDI----------ADVELQFLSEQDVKGADITYFRELLTGVATQA 59

Query: 81  QHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYG 140
           + +D L++  L+ +     L  +  +ILR  V EL +   VP +V I+E + +A  F   
Sbjct: 60  ERLDALMAPYLSRQ--LDELGQVERAILRLAVYELSKREDVPYKVAINEAIELAKVFGAE 117

Query: 141 DEPKFINAVLDKVS 154
           D  KF+N VLDK  
Sbjct: 118 DSHKFVNGVLDKAG 131


>gi|290893532|ref|ZP_06556515.1| transcription antitermination protein NusB [Listeria monocytogenes
           FSL J2-071]
 gi|290556877|gb|EFD90408.1| transcription antitermination protein NusB [Listeria monocytogenes
           FSL J2-071]
          Length = 128

 Score = 53.5 bits (127), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 44/142 (30%), Positives = 66/142 (46%), Gaps = 21/142 (14%)

Query: 15  RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74
           +R  AR  A+QAL+QI++   S  + I      +   + E D          ++   ++ 
Sbjct: 2   KRREAREKALQALFQIELNEMSLDQAI------KNIMEDERD----------DYMEKLVE 45

Query: 75  GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134
           GVM  K  ID +I   L + W   RL  +  S+LR  V E+     VP  V ++E + IA
Sbjct: 46  GVMANKVEIDAIIEPNL-DNWRIDRLSKVDLSLLRLSVYEIKYLDDVPNRVSLNESIEIA 104

Query: 135 HDFFYGDEP--KFINAVLDKVS 154
               Y DE   KFIN VL  ++
Sbjct: 105 K--IYSDEKSSKFINGVLANIA 124


>gi|145220268|ref|YP_001130977.1| NusB antitermination factor [Prosthecochloris vibrioformis DSM 265]
 gi|189035896|sp|A4SG66|NUSB_PROVI RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|145206432|gb|ABP37475.1| NusB antitermination factor [Chlorobium phaeovibrioides DSM 265]
          Length = 164

 Score = 53.5 bits (127), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 44/156 (28%), Positives = 78/156 (50%), Gaps = 17/156 (10%)

Query: 13  SHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVI 72
           ++RR I R   +QALY +++             T    AD +           +++F ++
Sbjct: 3   TYRRQI-REKILQALYTLELRDTDIDSAAGWLLTPEILADPKA----------MKFFNLL 51

Query: 73  IHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVC 132
           +  + +  + ID  I++  T  W  SR+ +I  +ILR  + EL+ C  +P +V I+E + 
Sbjct: 52  LGNIKEHMEEIDRYIAAH-TFNWDMSRIAIIDKNILRMAMAELLYCDDIPPKVSINEAIE 110

Query: 133 IAHDFFYGDE-PKFINAVLDKV--SRKEE--IKRSG 163
           IA  F   D+  KF+N +LD +  + KEE  I ++G
Sbjct: 111 IAKKFSSTDKSSKFVNGILDAIFNALKEEGKINKNG 146


>gi|226320701|ref|ZP_03796259.1| transcription antitermination factor NusB [Borrelia burgdorferi
           29805]
 gi|226233917|gb|EEH32640.1| transcription antitermination factor NusB [Borrelia burgdorferi
           29805]
          Length = 693

 Score = 53.5 bits (127), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 40/140 (28%), Positives = 66/140 (47%), Gaps = 9/140 (6%)

Query: 20  RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79
           R+ A Q +Y IDI   +  +I   +       D  LD+E+  +     ++  ++ G  + 
Sbjct: 5   RVLAFQKIYSIDINQSAMDDIFDIFNI----EDKGLDIENESIK---SFYSSLVIGTFNN 57

Query: 80  KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLEL-IECHSVPVEVIISEYVCIAHDFF 138
            +HID LI   ++  WS  R+D +  +ILR GV  L  +        II E + IA  + 
Sbjct: 58  LEHIDSLIRD-ISLNWSLERMDKVDLAILRMGVYSLKFQNFENSKRAIIDEAILIAKKYG 116

Query: 139 YGDEPKFINAVLDKVSRKEE 158
             +  KFIN +LD + +  E
Sbjct: 117 SKNSYKFINGILDALLKNME 136


>gi|152979151|ref|YP_001344780.1| transcription antitermination protein NusB [Actinobacillus
           succinogenes 130Z]
 gi|171704320|sp|A6VPE8|NUSB_ACTSZ RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|150840874|gb|ABR74845.1| NusB antitermination factor [Actinobacillus succinogenes 130Z]
          Length = 142

 Score = 53.5 bits (127), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 46/144 (31%), Positives = 67/144 (46%), Gaps = 14/144 (9%)

Query: 11  KLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFR 70
           K+S RR  AR  AVQALY   +     TEI            TE D++ V    D  +FR
Sbjct: 7   KVSPRRR-ARECAVQALYSWAVSNNDATEI-------ELSFITEQDMKGV----DTPYFR 54

Query: 71  VIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEY 130
            +    +   + +D+ I+  L    +   L  I  ++LR    EL     VP +V I+E 
Sbjct: 55  KLFRNTVTYLESVDVTIAPFLDR--TSEELTPIEKAVLRLATYELKYEPDVPYKVAINEA 112

Query: 131 VCIAHDFFYGDEPKFINAVLDKVS 154
           + +A  F   D  K+IN VLDK++
Sbjct: 113 IELAKTFGAEDSHKYINGVLDKIA 136


>gi|319789884|ref|YP_004151517.1| NusB antitermination factor [Thermovibrio ammonificans HB-1]
 gi|317114386|gb|ADU96876.1| NusB antitermination factor [Thermovibrio ammonificans HB-1]
          Length = 142

 Score = 53.5 bits (127), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 44/150 (29%), Positives = 69/150 (46%), Gaps = 16/150 (10%)

Query: 10  LKLSHR-RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEW 68
           + L++R +  AR  A   +YQ+D+      E+   Y +       E+   S YL      
Sbjct: 1   MALTNREKKKAREHACLIMYQVDVGNLPLKEVTENYWSDFGKEKEEIKELSEYL------ 54

Query: 69  FRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIIS 128
               +   ++  + +D  I   L + W   RL  +  SILR    E++     P E +I+
Sbjct: 55  ----VKKTIEHLEEVDRAIGKHLKKGWVIERLLPMDRSILRVASYEILNEEISPPEAVIN 110

Query: 129 EYVCIAHDFFYGDE---PKFINAVLDKVSR 155
           + V IA    YG++   PKFINA+LDKV R
Sbjct: 111 DAVEIAKS--YGEDEKSPKFINAILDKVKR 138


>gi|238783631|ref|ZP_04627652.1| N utilization substance protein B [Yersinia bercovieri ATCC 43970]
 gi|238715509|gb|EEQ07500.1| N utilization substance protein B [Yersinia bercovieri ATCC 43970]
          Length = 138

 Score = 53.5 bits (127), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 42/134 (31%), Positives = 65/134 (48%), Gaps = 17/134 (12%)

Query: 23  AVQALYQIDIIGCSTTEIISEYETYRFCADTELDV--ESVYLHVDLEWFRVIIHGVMDRK 80
           AVQALY   +   S  +I          AD EL    E     VD+ +FR ++ GV    
Sbjct: 13  AVQALYSWQL---SKNDI----------ADVELQFLSEQDVKDVDIAYFRELLSGVAVNA 59

Query: 81  QHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYG 140
             +D L++  L+ +     L  +  ++LR  + EL +   VP +V I+E + +A  F   
Sbjct: 60  ASLDALMAPVLSRQ--LEELGQVERAVLRIALFELSKREDVPYKVAINEAIELAKTFGAE 117

Query: 141 DEPKFINAVLDKVS 154
           D  KF+N VLDK++
Sbjct: 118 DSHKFVNGVLDKLA 131


>gi|319937360|ref|ZP_08011767.1| hypothetical protein HMPREF9488_02602 [Coprobacillus sp. 29_1]
 gi|319807726|gb|EFW04319.1| hypothetical protein HMPREF9488_02602 [Coprobacillus sp. 29_1]
          Length = 134

 Score = 53.5 bits (127), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 42/142 (29%), Positives = 65/142 (45%), Gaps = 16/142 (11%)

Query: 15  RRGIARLAAVQALYQIDIIGCSTTEII---SEYETYRFCADTELDVESVYLHVDLEWFRV 71
           RR IAR  A   +YQ  ++  S  +I+   SE +T     +T            + + R 
Sbjct: 5   RRQIAREKATIGVYQNLLVDSSLEDILTFLSEEKTLTKSEET------------MAFSRW 52

Query: 72  IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
           ++   +  K+    LI   L + W F RL M+  +IL     EL+E   +P  ++I+E V
Sbjct: 53  LVETTLQNKESYQTLIEKHLKKGWKFERLSMMEKAILMIAACELLES-DLPKTIVINEAV 111

Query: 132 CIAHDFFYGDEPKFINAVLDKV 153
             A  F   D  KFIN VL ++
Sbjct: 112 LNAKKFCDDDSYKFINGVLGQI 133


>gi|15800145|ref|NP_286157.1| transcription antitermination protein NusB [Escherichia coli
           O157:H7 EDL933]
 gi|15829723|ref|NP_308496.1| transcription antitermination protein NusB [Escherichia coli
           O157:H7 str. Sakai]
 gi|16128401|ref|NP_414950.1| transcription antitermination protein [Escherichia coli str. K-12
           substr. MG1655]
 gi|24111794|ref|NP_706304.1| transcription antitermination protein NusB [Shigella flexneri 2a
           str. 301]
 gi|26246422|ref|NP_752461.1| transcription antitermination protein NusB [Escherichia coli
           CFT073]
 gi|30061911|ref|NP_836082.1| transcription antitermination protein NusB [Shigella flexneri 2a
           str. 2457T]
 gi|74310985|ref|YP_309404.1| transcription antitermination protein NusB [Shigella sonnei Ss046]
 gi|82542904|ref|YP_406851.1| transcription antitermination protein NusB [Shigella boydii Sb227]
 gi|82775679|ref|YP_402026.1| transcription antitermination protein NusB [Shigella dysenteriae
           Sd197]
 gi|89107286|ref|AP_001066.1| transcription antitermination protein [Escherichia coli str. K-12
           substr. W3110]
 gi|91209485|ref|YP_539471.1| transcription antitermination protein NusB [Escherichia coli UTI89]
 gi|110640677|ref|YP_668405.1| transcription antitermination protein NusB [Escherichia coli 536]
 gi|110804438|ref|YP_687958.1| transcription antitermination protein NusB [Shigella flexneri 5
           str. 8401]
 gi|157154883|ref|YP_001461598.1| transcription antitermination protein NusB [Escherichia coli
           E24377A]
 gi|157159937|ref|YP_001457255.1| transcription antitermination protein NusB [Escherichia coli HS]
 gi|170021212|ref|YP_001726166.1| transcription antitermination protein NusB [Escherichia coli ATCC
           8739]
 gi|170080002|ref|YP_001729322.1| transcription antitermination protein [Escherichia coli str. K-12
           substr. DH10B]
 gi|170681155|ref|YP_001742553.1| transcription antitermination protein NusB [Escherichia coli
           SMS-3-5]
 gi|170767720|ref|ZP_02902173.1| transcription termination/antitermination factor NusB [Escherichia
           albertii TW07627]
 gi|187730987|ref|YP_001879125.1| transcription antitermination protein NusB [Shigella boydii CDC
           3083-94]
 gi|187776230|ref|ZP_02801288.2| transcription termination/antitermination factor NusB [Escherichia
           coli O157:H7 str. EC4196]
 gi|188024918|ref|ZP_02774897.2| transcription termination/antitermination factor NusB [Escherichia
           coli O157:H7 str. EC4113]
 gi|188493154|ref|ZP_03000424.1| transcription termination/antitermination factor NusB [Escherichia
           coli 53638]
 gi|189010625|ref|ZP_02808286.2| transcription termination/antitermination factor NusB [Escherichia
           coli O157:H7 str. EC4076]
 gi|189402368|ref|ZP_02781962.2| transcription termination/antitermination factor NusB [Escherichia
           coli O157:H7 str. EC4401]
 gi|189403130|ref|ZP_02793371.2| transcription termination/antitermination factor NusB [Escherichia
           coli O157:H7 str. EC4486]
 gi|189404015|ref|ZP_02786626.2| transcription termination/antitermination factor NusB [Escherichia
           coli O157:H7 str. EC4501]
 gi|189404842|ref|ZP_02811267.2| transcription termination/antitermination factor NusB [Escherichia
           coli O157:H7 str. EC869]
 gi|189405926|ref|ZP_02825303.2| transcription termination/antitermination factor NusB [Escherichia
           coli O157:H7 str. EC508]
 gi|191166701|ref|ZP_03028528.1| transcription termination/antitermination factor NusB [Escherichia
           coli B7A]
 gi|191173527|ref|ZP_03035054.1| transcription termination/antitermination factor NusB [Escherichia
           coli F11]
 gi|193065231|ref|ZP_03046304.1| transcription termination/antitermination factor NusB [Escherichia
           coli E22]
 gi|193068719|ref|ZP_03049680.1| transcription termination/antitermination factor NusB [Escherichia
           coli E110019]
 gi|194428830|ref|ZP_03061365.1| transcription termination/antitermination factor NusB [Escherichia
           coli B171]
 gi|194432551|ref|ZP_03064837.1| transcription termination/antitermination factor NusB [Shigella
           dysenteriae 1012]
 gi|194438929|ref|ZP_03071014.1| transcription termination/antitermination factor NusB [Escherichia
           coli 101-1]
 gi|195938519|ref|ZP_03083901.1| transcription antitermination protein NusB [Escherichia coli
           O157:H7 str. EC4024]
 gi|208809341|ref|ZP_03251678.1| transcription termination/antitermination factor NusB [Escherichia
           coli O157:H7 str. EC4206]
 gi|208815911|ref|ZP_03257090.1| transcription termination/antitermination factor NusB [Escherichia
           coli O157:H7 str. EC4045]
 gi|208822969|ref|ZP_03263287.1| transcription termination/antitermination factor NusB [Escherichia
           coli O157:H7 str. EC4042]
 gi|209396859|ref|YP_002269060.1| transcription termination/antitermination factor NusB [Escherichia
           coli O157:H7 str. EC4115]
 gi|209917629|ref|YP_002291713.1| transcription antitermination protein NusB [Escherichia coli SE11]
 gi|215485497|ref|YP_002327928.1| transcription antitermination protein NusB [Escherichia coli
           O127:H6 str. E2348/69]
 gi|217325689|ref|ZP_03441773.1| transcription termination/antitermination factor NusB [Escherichia
           coli O157:H7 str. TW14588]
 gi|218552979|ref|YP_002385892.1| transcription antitermination protein NusB [Escherichia coli IAI1]
 gi|218557325|ref|YP_002390238.1| transcription antitermination protein NusB [Escherichia coli S88]
 gi|218688279|ref|YP_002396491.1| transcription antitermination protein NusB [Escherichia coli ED1a]
 gi|218693876|ref|YP_002401543.1| transcription antitermination protein NusB [Escherichia coli 55989]
 gi|218698675|ref|YP_002406304.1| transcription antitermination protein NusB [Escherichia coli IAI39]
 gi|218703698|ref|YP_002411217.1| transcription antitermination protein NusB [Escherichia coli
           UMN026]
 gi|227884576|ref|ZP_04002381.1| N utilization substance B [Escherichia coli 83972]
 gi|237707590|ref|ZP_04538071.1| transcription termination [Escherichia sp. 3_2_53FAA]
 gi|238899704|ref|YP_002925500.1| transcription antitermination protein [Escherichia coli BW2952]
 gi|253774599|ref|YP_003037430.1| transcription antitermination protein NusB [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|254160482|ref|YP_003043590.1| transcription antitermination protein NusB [Escherichia coli B str.
           REL606]
 gi|254791599|ref|YP_003076436.1| transcription antitermination protein NusB [Escherichia coli
           O157:H7 str. TW14359]
 gi|256020383|ref|ZP_05434248.1| transcription antitermination protein NusB [Shigella sp. D9]
 gi|256023967|ref|ZP_05437832.1| transcription antitermination protein NusB [Escherichia sp.
           4_1_40B]
 gi|260842614|ref|YP_003220392.1| transcription antitermination protein NusB [Escherichia coli
           O103:H2 str. 12009]
 gi|260853636|ref|YP_003227527.1| transcription antitermination protein NusB [Escherichia coli
           O26:H11 str. 11368]
 gi|260866574|ref|YP_003232976.1| transcription antitermination protein NusB [Escherichia coli
           O111:H- str. 11128]
 gi|261223895|ref|ZP_05938176.1| transcription antitermination protein [Escherichia coli O157:H7
           str. FRIK2000]
 gi|261256391|ref|ZP_05948924.1| transcription antitermination protein NusB [Escherichia coli
           O157:H7 str. FRIK966]
 gi|291281322|ref|YP_003498140.1| N utilization substance protein B-like protein [Escherichia coli
           O55:H7 str. CB9615]
 gi|293403535|ref|ZP_06647626.1| N utilization substance protein B [Escherichia coli FVEC1412]
 gi|293408562|ref|ZP_06652401.1| transcription antitermination factor NusB [Escherichia coli B354]
 gi|293413670|ref|ZP_06656319.1| transcription antitermination factor NusB [Escherichia coli B185]
 gi|293418483|ref|ZP_06660918.1| transcription antitermination factor NusB [Escherichia coli B088]
 gi|297517701|ref|ZP_06936087.1| transcription antitermination protein NusB [Escherichia coli OP50]
 gi|298379147|ref|ZP_06989028.1| N utilization substance protein B [Escherichia coli FVEC1302]
 gi|300818260|ref|ZP_07098471.1| transcription antitermination factor NusB [Escherichia coli MS
           107-1]
 gi|300820345|ref|ZP_07100497.1| transcription antitermination factor NusB [Escherichia coli MS
           119-7]
 gi|300900482|ref|ZP_07118649.1| transcription antitermination factor NusB [Escherichia coli MS
           198-1]
 gi|300903319|ref|ZP_07121247.1| transcription antitermination factor NusB [Escherichia coli MS
           84-1]
 gi|300918204|ref|ZP_07134811.1| transcription antitermination factor NusB [Escherichia coli MS
           115-1]
 gi|300924136|ref|ZP_07140128.1| transcription antitermination factor NusB [Escherichia coli MS
           182-1]
 gi|300930289|ref|ZP_07145702.1| transcription antitermination factor NusB [Escherichia coli MS
           187-1]
 gi|300937025|ref|ZP_07151891.1| transcription antitermination factor NusB [Escherichia coli MS
           21-1]
 gi|300947933|ref|ZP_07162081.1| transcription antitermination factor NusB [Escherichia coli MS
           116-1]
 gi|300957981|ref|ZP_07170146.1| transcription antitermination factor NusB [Escherichia coli MS
           175-1]
 gi|300988032|ref|ZP_07178512.1| transcription antitermination factor NusB [Escherichia coli MS
           45-1]
 gi|300997397|ref|ZP_07181737.1| transcription antitermination factor NusB [Escherichia coli MS
           200-1]
 gi|301022595|ref|ZP_07186467.1| transcription antitermination factor NusB [Escherichia coli MS
           69-1]
 gi|301025697|ref|ZP_07189213.1| transcription antitermination factor NusB [Escherichia coli MS
           196-1]
 gi|301049616|ref|ZP_07196567.1| transcription antitermination factor NusB [Escherichia coli MS
           185-1]
 gi|301301564|ref|ZP_07207699.1| transcription antitermination factor NusB [Escherichia coli MS
           124-1]
 gi|301647338|ref|ZP_07247150.1| transcription antitermination factor NusB [Escherichia coli MS
           146-1]
 gi|306813118|ref|ZP_07447311.1| transcription antitermination protein NusB [Escherichia coli NC101]
 gi|307137059|ref|ZP_07496415.1| transcription antitermination protein NusB [Escherichia coli H736]
 gi|307312209|ref|ZP_07591845.1| NusB antitermination factor [Escherichia coli W]
 gi|309787003|ref|ZP_07681615.1| transcription antitermination factor NusB [Shigella dysenteriae
           1617]
 gi|309794859|ref|ZP_07689280.1| transcription antitermination factor NusB [Escherichia coli MS
           145-7]
 gi|312964562|ref|ZP_07778818.1| transcription antitermination factor NusB [Escherichia coli
           2362-75]
 gi|312970511|ref|ZP_07784692.1| transcription antitermination factor NusB [Escherichia coli
           1827-70]
 gi|331640933|ref|ZP_08342068.1| transcription antitermination factor NusB [Escherichia coli H736]
 gi|331645589|ref|ZP_08346693.1| transcription antitermination factor NusB [Escherichia coli M605]
 gi|331651350|ref|ZP_08352375.1| transcription antitermination factor NusB [Escherichia coli M718]
 gi|331656470|ref|ZP_08357432.1| transcription antitermination factor NusB [Escherichia coli TA206]
 gi|331661793|ref|ZP_08362716.1| transcription antitermination factor NusB [Escherichia coli TA143]
 gi|331666765|ref|ZP_08367639.1| transcription antitermination factor NusB [Escherichia coli TA271]
 gi|331671961|ref|ZP_08372757.1| transcription antitermination factor NusB [Escherichia coli TA280]
 gi|331676083|ref|ZP_08376795.1| transcription antitermination factor NusB [Escherichia coli H591]
 gi|331681809|ref|ZP_08382442.1| transcription antitermination factor NusB [Escherichia coli H299]
 gi|332281562|ref|ZP_08393975.1| transcription termination/antitermination factor NusB [Shigella sp.
           D9]
 gi|67469828|sp|P0A780|NUSB_ECOLI RecName: Full=N utilization substance protein B; Short=Protein nusB
 gi|67469829|sp|P0A781|NUSB_ECOL6 RecName: Full=N utilization substance protein B; Short=Protein nusB
 gi|67469832|sp|P0A782|NUSB_ECO57 RecName: Full=N utilization substance protein B; Short=Protein nusB
 gi|67469833|sp|P0A783|NUSB_SHIFL RecName: Full=N utilization substance protein B; Short=Protein nusB
 gi|119390769|sp|Q0TKM5|NUSB_ECOL5 RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|119390770|sp|Q1RFC4|NUSB_ECOUT RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|119390822|sp|Q325I5|NUSB_SHIBS RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|119390823|sp|Q32JH0|NUSB_SHIDS RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|119390824|sp|Q3Z4Z3|NUSB_SHISS RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|122957627|sp|Q0T7H3|NUSB_SHIF8 RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|166918806|sp|A7ZIG9|NUSB_ECO24 RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|166918807|sp|A7ZX68|NUSB_ECOHS RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|189035889|sp|B1J033|NUSB_ECOLC RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|226738899|sp|B7MD74|NUSB_ECO45 RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|226738900|sp|B7NJ81|NUSB_ECO7I RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|226738901|sp|B7M3Q5|NUSB_ECO8A RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|226738902|sp|B7N8W8|NUSB_ECOLU RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|226738903|sp|B1LJG6|NUSB_ECOSM RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|229620059|sp|B1XF04|NUSB_ECODH RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|238055351|sp|B5Z3S0|NUSB_ECO5E RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|238055352|sp|B6HZL7|NUSB_ECOSE RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|238689513|sp|B2U4L9|NUSB_SHIB3 RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|254772637|sp|B7UJN9|NUSB_ECO27 RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|254772638|sp|B7L650|NUSB_ECO55 RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|254772639|sp|B7MQD1|NUSB_ECO81 RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|259514826|sp|C4ZTH3|NUSB_ECOBW RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|9257110|pdb|1EY1|A Chain A, Solution Structure Of Escherichia Coli Nusb
 gi|12513271|gb|AAG54765.1|AE005221_2 transcription termination; L factor [Escherichia coli O157:H7 str.
           EDL933]
 gi|26106820|gb|AAN79005.1|AE016756_188 N utilization substance protein B [Escherichia coli CFT073]
 gi|146976|gb|AAA24228.1| nusB [Escherichia coli]
 gi|581148|emb|CAA45737.1| nusB (ssyB) [Escherichia coli K-12]
 gi|581149|emb|CAA25289.1| unnamed protein product [Escherichia coli]
 gi|1773100|gb|AAB40172.1| N utilization substance protein B [Escherichia coli]
 gi|1786618|gb|AAC73519.1| transcription antitermination protein [Escherichia coli str. K-12
           substr. MG1655]
 gi|13359926|dbj|BAB33892.1| transcription termination factor NusB [Escherichia coli O157:H7
           str. Sakai]
 gi|15027052|emb|CAC44764.1| N utilisation substance protein B [Expression vector
           pNCO113-nusB/nusE]
 gi|24050582|gb|AAN42011.1| transcription termination factor NusB [Shigella flexneri 2a str.
           301]
 gi|30040155|gb|AAP15888.1| transcription termination factor NusB [Shigella flexneri 2a str.
           2457T]
 gi|73854462|gb|AAZ87169.1| transcription termination; L factor [Shigella sonnei Ss046]
 gi|81239827|gb|ABB60537.1| NusB [Shigella dysenteriae Sd197]
 gi|81244315|gb|ABB65023.1| NusB [Shigella boydii Sb227]
 gi|85674556|dbj|BAE76196.1| transcription antitermination protein [Escherichia coli str. K12
           substr. W3110]
 gi|91071059|gb|ABE05940.1| FJECB transcription termination; L factor [Escherichia coli UTI89]
 gi|110342269|gb|ABG68506.1| N utilization substance protein B [Escherichia coli 536]
 gi|110613986|gb|ABF02653.1| transcription termination L factor [Shigella flexneri 5 str. 8401]
 gi|157065617|gb|ABV04872.1| transcription termination/antitermination factor NusB [Escherichia
           coli HS]
 gi|157076913|gb|ABV16621.1| transcription termination/antitermination factor NusB [Escherichia
           coli E24377A]
 gi|169756140|gb|ACA78839.1| NusB antitermination factor [Escherichia coli ATCC 8739]
 gi|169887837|gb|ACB01544.1| transcription antitermination protein [Escherichia coli str. K-12
           substr. DH10B]
 gi|170123208|gb|EDS92139.1| transcription termination/antitermination factor NusB [Escherichia
           albertii TW07627]
 gi|170518873|gb|ACB17051.1| transcription termination/antitermination factor NusB [Escherichia
           coli SMS-3-5]
 gi|187427979|gb|ACD07253.1| transcription termination/antitermination factor NusB [Shigella
           boydii CDC 3083-94]
 gi|187768302|gb|EDU32146.1| transcription termination/antitermination factor NusB [Escherichia
           coli O157:H7 str. EC4196]
 gi|188015850|gb|EDU53972.1| transcription termination/antitermination factor NusB [Escherichia
           coli O157:H7 str. EC4113]
 gi|188488353|gb|EDU63456.1| transcription termination/antitermination factor NusB [Escherichia
           coli 53638]
 gi|188999358|gb|EDU68344.1| transcription termination/antitermination factor NusB [Escherichia
           coli O157:H7 str. EC4076]
 gi|189356022|gb|EDU74441.1| transcription termination/antitermination factor NusB [Escherichia
           coli O157:H7 str. EC4401]
 gi|189362518|gb|EDU80937.1| transcription termination/antitermination factor NusB [Escherichia
           coli O157:H7 str. EC4486]
 gi|189368081|gb|EDU86497.1| transcription termination/antitermination factor NusB [Escherichia
           coli O157:H7 str. EC4501]
 gi|189373730|gb|EDU92146.1| transcription termination/antitermination factor NusB [Escherichia
           coli O157:H7 str. EC869]
 gi|189377377|gb|EDU95793.1| transcription termination/antitermination factor NusB [Escherichia
           coli O157:H7 str. EC508]
 gi|190903212|gb|EDV62934.1| transcription termination/antitermination factor NusB [Escherichia
           coli B7A]
 gi|190906236|gb|EDV65848.1| transcription termination/antitermination factor NusB [Escherichia
           coli F11]
 gi|192927205|gb|EDV81826.1| transcription termination/antitermination factor NusB [Escherichia
           coli E22]
 gi|192958082|gb|EDV88524.1| transcription termination/antitermination factor NusB [Escherichia
           coli E110019]
 gi|194413133|gb|EDX29420.1| transcription termination/antitermination factor NusB [Escherichia
           coli B171]
 gi|194419112|gb|EDX35195.1| transcription termination/antitermination factor NusB [Shigella
           dysenteriae 1012]
 gi|194422223|gb|EDX38225.1| transcription termination/antitermination factor NusB [Escherichia
           coli 101-1]
 gi|208729142|gb|EDZ78743.1| transcription termination/antitermination factor NusB [Escherichia
           coli O157:H7 str. EC4206]
 gi|208732559|gb|EDZ81247.1| transcription termination/antitermination factor NusB [Escherichia
           coli O157:H7 str. EC4045]
 gi|208737162|gb|EDZ84846.1| transcription termination/antitermination factor NusB [Escherichia
           coli O157:H7 str. EC4042]
 gi|209158259|gb|ACI35692.1| transcription termination/antitermination factor NusB [Escherichia
           coli O157:H7 str. EC4115]
 gi|209744064|gb|ACI70339.1| transcription termination factor NusB [Escherichia coli]
 gi|209744066|gb|ACI70340.1| transcription termination factor NusB [Escherichia coli]
 gi|209744068|gb|ACI70341.1| transcription termination factor NusB [Escherichia coli]
 gi|209744070|gb|ACI70342.1| transcription termination factor NusB [Escherichia coli]
 gi|209744072|gb|ACI70343.1| transcription termination factor NusB [Escherichia coli]
 gi|209910888|dbj|BAG75962.1| N utilization substance protein B [Escherichia coli SE11]
 gi|215263569|emb|CAS07899.1| transcription antitermination protein NusB [Escherichia coli
           O127:H6 str. E2348/69]
 gi|217321910|gb|EEC30334.1| transcription termination/antitermination factor NusB [Escherichia
           coli O157:H7 str. TW14588]
 gi|218350608|emb|CAU96300.1| transcription antitermination protein [Escherichia coli 55989]
 gi|218359747|emb|CAQ97288.1| transcription antitermination protein [Escherichia coli IAI1]
 gi|218364094|emb|CAR01759.1| transcription antitermination protein [Escherichia coli S88]
 gi|218368661|emb|CAR16400.1| transcription antitermination protein [Escherichia coli IAI39]
 gi|218425843|emb|CAR06649.1| transcription antitermination protein [Escherichia coli ED1a]
 gi|218430795|emb|CAR11669.1| transcription antitermination protein [Escherichia coli UMN026]
 gi|222032211|emb|CAP74950.1| N utilization substance protein B [Escherichia coli LF82]
 gi|226898800|gb|EEH85059.1| transcription termination [Escherichia sp. 3_2_53FAA]
 gi|227838662|gb|EEJ49128.1| N utilization substance B [Escherichia coli 83972]
 gi|238863676|gb|ACR65674.1| transcription antitermination protein [Escherichia coli BW2952]
 gi|242376194|emb|CAQ30885.1| transcription antitermination protein NusB, subunit of NusB-NusE
           complex [Escherichia coli BL21(DE3)]
 gi|253325643|gb|ACT30245.1| NusB antitermination factor [Escherichia coli 'BL21-Gold(DE3)pLysS
           AG']
 gi|253972383|gb|ACT38054.1| transcription antitermination protein NusB [Escherichia coli B str.
           REL606]
 gi|253976593|gb|ACT42263.1| transcription antitermination protein NusB [Escherichia coli
           BL21(DE3)]
 gi|254590999|gb|ACT70360.1| transcription antitermination protein [Escherichia coli O157:H7
           str. TW14359]
 gi|257752285|dbj|BAI23787.1| transcription antitermination protein NusB [Escherichia coli
           O26:H11 str. 11368]
 gi|257757761|dbj|BAI29258.1| transcription antitermination protein NusB [Escherichia coli
           O103:H2 str. 12009]
 gi|257762930|dbj|BAI34425.1| transcription antitermination protein NusB [Escherichia coli
           O111:H- str. 11128]
 gi|260450397|gb|ACX40819.1| NusB antitermination factor [Escherichia coli DH1]
 gi|281177586|dbj|BAI53916.1| N utilization substance protein B [Escherichia coli SE15]
 gi|281599748|gb|ADA72732.1| N utilization substance protein B [Shigella flexneri 2002017]
 gi|284920225|emb|CBG33284.1| N utilization substance protein B [Escherichia coli 042]
 gi|290761195|gb|ADD55156.1| N utilization substance protein B-like protein [Escherichia coli
           O55:H7 str. CB9615]
 gi|291325011|gb|EFE64426.1| transcription antitermination factor NusB [Escherichia coli B088]
 gi|291429388|gb|EFF02408.1| N utilization substance protein B [Escherichia coli FVEC1412]
 gi|291433728|gb|EFF06701.1| transcription antitermination factor NusB [Escherichia coli B185]
 gi|291471740|gb|EFF14223.1| transcription antitermination factor NusB [Escherichia coli B354]
 gi|294491145|gb|ADE89901.1| transcription termination/antitermination factor NusB [Escherichia
           coli IHE3034]
 gi|298280260|gb|EFI21764.1| N utilization substance protein B [Escherichia coli FVEC1302]
 gi|299880009|gb|EFI88220.1| transcription antitermination factor NusB [Escherichia coli MS
           196-1]
 gi|300298609|gb|EFJ54994.1| transcription antitermination factor NusB [Escherichia coli MS
           185-1]
 gi|300304216|gb|EFJ58736.1| transcription antitermination factor NusB [Escherichia coli MS
           200-1]
 gi|300315317|gb|EFJ65101.1| transcription antitermination factor NusB [Escherichia coli MS
           175-1]
 gi|300355963|gb|EFJ71833.1| transcription antitermination factor NusB [Escherichia coli MS
           198-1]
 gi|300397476|gb|EFJ81014.1| transcription antitermination factor NusB [Escherichia coli MS
           69-1]
 gi|300404614|gb|EFJ88152.1| transcription antitermination factor NusB [Escherichia coli MS
           84-1]
 gi|300407584|gb|EFJ91122.1| transcription antitermination factor NusB [Escherichia coli MS
           45-1]
 gi|300414655|gb|EFJ97965.1| transcription antitermination factor NusB [Escherichia coli MS
           115-1]
 gi|300419589|gb|EFK02900.1| transcription antitermination factor NusB [Escherichia coli MS
           182-1]
 gi|300452533|gb|EFK16153.1| transcription antitermination factor NusB [Escherichia coli MS
           116-1]
 gi|300457856|gb|EFK21349.1| transcription antitermination factor NusB [Escherichia coli MS
           21-1]
 gi|300461861|gb|EFK25354.1| transcription antitermination factor NusB [Escherichia coli MS
           187-1]
 gi|300527130|gb|EFK48199.1| transcription antitermination factor NusB [Escherichia coli MS
           119-7]
 gi|300529151|gb|EFK50213.1| transcription antitermination factor NusB [Escherichia coli MS
           107-1]
 gi|300843061|gb|EFK70821.1| transcription antitermination factor NusB [Escherichia coli MS
           124-1]
 gi|301074483|gb|EFK89289.1| transcription antitermination factor NusB [Escherichia coli MS
           146-1]
 gi|305853881|gb|EFM54320.1| transcription antitermination protein NusB [Escherichia coli NC101]
 gi|306907711|gb|EFN38213.1| NusB antitermination factor [Escherichia coli W]
 gi|307552321|gb|ADN45096.1| N utilization substance protein B [Escherichia coli ABU 83972]
 gi|307628115|gb|ADN72419.1| transcription antitermination protein NusB [Escherichia coli UM146]
 gi|308121512|gb|EFO58774.1| transcription antitermination factor NusB [Escherichia coli MS
           145-7]
 gi|308924581|gb|EFP70076.1| transcription antitermination factor NusB [Shigella dysenteriae
           1617]
 gi|309700678|emb|CBI99974.1| N utilization substance protein B [Escherichia coli ETEC H10407]
 gi|310337160|gb|EFQ02298.1| transcription antitermination factor NusB [Escherichia coli
           1827-70]
 gi|312290796|gb|EFR18673.1| transcription antitermination factor NusB [Escherichia coli
           2362-75]
 gi|312944993|gb|ADR25820.1| transcription antitermination protein NusB [Escherichia coli O83:H1
           str. NRG 857C]
 gi|313646967|gb|EFS11424.1| transcription antitermination factor NusB [Shigella flexneri 2a
           str. 2457T]
 gi|315059693|gb|ADT74020.1| transcription antitermination protein [Escherichia coli W]
 gi|315135098|dbj|BAJ42257.1| N utilization substance protein B-like protein [Escherichia coli
           DH1]
 gi|315256241|gb|EFU36209.1| transcription antitermination factor NusB [Escherichia coli MS
           85-1]
 gi|315289869|gb|EFU49259.1| transcription antitermination factor NusB [Escherichia coli MS
           110-3]
 gi|315294205|gb|EFU53556.1| transcription antitermination factor NusB [Escherichia coli MS
           153-1]
 gi|315299582|gb|EFU58830.1| transcription antitermination factor NusB [Escherichia coli MS
           16-3]
 gi|315616644|gb|EFU97261.1| transcription antitermination factor NusB [Escherichia coli 3431]
 gi|320173766|gb|EFW48949.1| Transcription termination protein NusB [Shigella dysenteriae CDC
           74-1112]
 gi|320181602|gb|EFW56517.1| Transcription termination protein NusB [Shigella boydii ATCC 9905]
 gi|320186045|gb|EFW60790.1| Transcription termination protein NusB [Shigella flexneri CDC
           796-83]
 gi|320192829|gb|EFW67469.1| Transcription termination protein NusB [Escherichia coli O157:H7
           str. EC1212]
 gi|320197146|gb|EFW71763.1| Transcription termination protein NusB [Escherichia coli WV_060327]
 gi|320201657|gb|EFW76233.1| Transcription termination protein NusB [Escherichia coli EC4100B]
 gi|320638408|gb|EFX08122.1| transcription antitermination protein NusB [Escherichia coli
           O157:H7 str. G5101]
 gi|320643788|gb|EFX12911.1| transcription antitermination protein NusB [Escherichia coli
           O157:H- str. 493-89]
 gi|320649139|gb|EFX17717.1| transcription antitermination protein NusB [Escherichia coli
           O157:H- str. H 2687]
 gi|320656032|gb|EFX23948.1| transcription antitermination protein NusB [Escherichia coli O55:H7
           str. 3256-97 TW 07815]
 gi|320661182|gb|EFX28613.1| transcription antitermination protein NusB [Escherichia coli O55:H7
           str. USDA 5905]
 gi|320665158|gb|EFX32251.1| transcription antitermination protein NusB [Escherichia coli
           O157:H7 str. LSU-61]
 gi|323152116|gb|EFZ38409.1| transcription antitermination factor NusB [Escherichia coli
           EPECa14]
 gi|323160477|gb|EFZ46425.1| transcription antitermination factor NusB [Escherichia coli
           E128010]
 gi|323164207|gb|EFZ50014.1| transcription antitermination factor NusB [Shigella sonnei 53G]
 gi|323170498|gb|EFZ56148.1| transcription antitermination factor NusB [Escherichia coli LT-68]
 gi|323178321|gb|EFZ63899.1| transcription antitermination factor NusB [Escherichia coli 1180]
 gi|323184758|gb|EFZ70129.1| transcription antitermination factor NusB [Escherichia coli 1357]
 gi|323191334|gb|EFZ76597.1| transcription antitermination factor NusB [Escherichia coli
           RN587/1]
 gi|323379741|gb|ADX52009.1| NusB antitermination factor [Escherichia coli KO11]
 gi|323938601|gb|EGB34850.1| transcription antitermination protein NusB [Escherichia coli E1520]
 gi|323943222|gb|EGB39378.1| transcription antitermination protein NusB [Escherichia coli E482]
 gi|323945317|gb|EGB41373.1| transcription antitermination protein NusB [Escherichia coli H120]
 gi|323952972|gb|EGB48840.1| transcription antitermination protein NusB [Escherichia coli H252]
 gi|323958609|gb|EGB54312.1| transcription antitermination protein NusB [Escherichia coli H263]
 gi|323963402|gb|EGB58964.1| transcription antitermination protein NusB [Escherichia coli H489]
 gi|323965098|gb|EGB60557.1| transcription antitermination protein NusB [Escherichia coli M863]
 gi|323972266|gb|EGB67476.1| transcription antitermination protein NusB [Escherichia coli TA007]
 gi|323976103|gb|EGB71196.1| transcription antitermination protein NusB [Escherichia coli
           TW10509]
 gi|324010093|gb|EGB79312.1| transcription antitermination factor NusB [Escherichia coli MS
           57-2]
 gi|324010676|gb|EGB79895.1| transcription antitermination factor NusB [Escherichia coli MS
           60-1]
 gi|324016678|gb|EGB85897.1| transcription antitermination factor NusB [Escherichia coli MS
           117-3]
 gi|324116900|gb|EGC10813.1| transcription antitermination protein NusB [Escherichia coli E1167]
 gi|326341177|gb|EGD64969.1| Transcription termination protein NusB [Escherichia coli O157:H7
           str. 1044]
 gi|326346048|gb|EGD69787.1| Transcription termination protein NusB [Escherichia coli O157:H7
           str. 1125]
 gi|327254737|gb|EGE66353.1| transcription antitermination factor NusB [Escherichia coli
           STEC_7v]
 gi|330910210|gb|EGH38720.1| transcription termination protein NusB [Escherichia coli AA86]
 gi|331037731|gb|EGI09951.1| transcription antitermination factor NusB [Escherichia coli H736]
 gi|331045751|gb|EGI17877.1| transcription antitermination factor NusB [Escherichia coli M605]
 gi|331051091|gb|EGI23143.1| transcription antitermination factor NusB [Escherichia coli M718]
 gi|331054718|gb|EGI26727.1| transcription antitermination factor NusB [Escherichia coli TA206]
 gi|331060215|gb|EGI32179.1| transcription antitermination factor NusB [Escherichia coli TA143]
 gi|331065989|gb|EGI37873.1| transcription antitermination factor NusB [Escherichia coli TA271]
 gi|331070950|gb|EGI42309.1| transcription antitermination factor NusB [Escherichia coli TA280]
 gi|331076141|gb|EGI47423.1| transcription antitermination factor NusB [Escherichia coli H591]
 gi|331081011|gb|EGI52176.1| transcription antitermination factor NusB [Escherichia coli H299]
 gi|332086022|gb|EGI91186.1| transcription antitermination factor NusB [Shigella dysenteriae
           155-74]
 gi|332094566|gb|EGI99612.1| transcription antitermination factor NusB [Shigella boydii 5216-82]
 gi|332098578|gb|EGJ03544.1| transcription antitermination factor NusB [Shigella boydii 3594-74]
 gi|332103914|gb|EGJ07260.1| transcription termination/antitermination factor NusB [Shigella sp.
           D9]
 gi|332341779|gb|AEE55113.1| transcription antitermination factor protein NusB [Escherichia coli
           UMNK88]
 gi|332760696|gb|EGJ90984.1| transcription antitermination factor NusB [Shigella flexneri
           4343-70]
 gi|332761743|gb|EGJ92022.1| transcription antitermination factor NusB [Shigella flexneri
           2747-71]
 gi|332764293|gb|EGJ94529.1| transcription antitermination factor NusB [Shigella flexneri K-671]
 gi|332768521|gb|EGJ98704.1| transcription antitermination factor NusB [Shigella flexneri
           2930-71]
 gi|333007978|gb|EGK27454.1| transcription antitermination factor NusB [Shigella flexneri K-218]
 gi|333008611|gb|EGK28079.1| transcription antitermination factor NusB [Shigella flexneri VA-6]
 gi|333010858|gb|EGK30284.1| transcription antitermination factor NusB [Shigella flexneri K-272]
 gi|333021357|gb|EGK40610.1| transcription antitermination factor NusB [Shigella flexneri K-227]
 gi|333022014|gb|EGK41259.1| transcription antitermination factor NusB [Shigella flexneri K-304]
 gi|1096319|prf||2111328A NusB protein
          Length = 139

 Score = 53.5 bits (127), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 41/132 (31%), Positives = 65/132 (49%), Gaps = 13/132 (9%)

Query: 23  AVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQH 82
           AVQALY   +      ++      Y+F A  E DV+ V    D+ +FR ++ GV     +
Sbjct: 13  AVQALYSWQLSQNDIADV-----EYQFLA--EQDVKDV----DVLYFRELLAGVATNTAY 61

Query: 83  IDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDE 142
           +D L+   L+       L  +  ++LR  + EL +   VP +V I+E + +A  F   D 
Sbjct: 62  LDGLMKPYLSR--LLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDS 119

Query: 143 PKFINAVLDKVS 154
            KF+N VLDK +
Sbjct: 120 HKFVNGVLDKAA 131


>gi|167758087|ref|ZP_02430214.1| hypothetical protein CLOSCI_00425 [Clostridium scindens ATCC 35704]
 gi|167663984|gb|EDS08114.1| hypothetical protein CLOSCI_00425 [Clostridium scindens ATCC 35704]
          Length = 132

 Score = 53.5 bits (127), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 30/89 (33%), Positives = 47/89 (52%), Gaps = 1/89 (1%)

Query: 65  DLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVE 124
           DL++ R  +  +  + + ID LI+   T +W  SR++ +  +ILR  V E+     VP  
Sbjct: 43  DLDYIREKVQKIASKVEEIDALINEHTT-RWKTSRMNKVDLTILRLAVYEMRWDEDVPTG 101

Query: 125 VIISEYVCIAHDFFYGDEPKFINAVLDKV 153
           V I E V +A  +   D P F+N VL K+
Sbjct: 102 VAIDEAVELAKKYSSEDGPSFVNGVLAKL 130


>gi|228941343|ref|ZP_04103895.1| N utilization substance protein B [Bacillus thuringiensis serovar
           berliner ATCC 10792]
 gi|228954468|ref|ZP_04116493.1| N utilization substance protein B [Bacillus thuringiensis serovar
           kurstaki str. T03a001]
 gi|228960450|ref|ZP_04122101.1| N utilization substance protein B [Bacillus thuringiensis serovar
           pakistani str. T13001]
 gi|228980868|ref|ZP_04141172.1| N utilization substance protein B [Bacillus thuringiensis Bt407]
 gi|229047878|ref|ZP_04193454.1| N utilization substance protein B [Bacillus cereus AH676]
 gi|229071689|ref|ZP_04204905.1| N utilization substance protein B [Bacillus cereus F65185]
 gi|229081441|ref|ZP_04213941.1| N utilization substance protein B [Bacillus cereus Rock4-2]
 gi|229111657|ref|ZP_04241207.1| N utilization substance protein B [Bacillus cereus Rock1-15]
 gi|229129462|ref|ZP_04258433.1| N utilization substance protein B [Bacillus cereus BDRD-Cer4]
 gi|229146757|ref|ZP_04275122.1| N utilization substance protein B [Bacillus cereus BDRD-ST24]
 gi|229152384|ref|ZP_04280576.1| N utilization substance protein B [Bacillus cereus m1550]
 gi|229163128|ref|ZP_04291084.1| N utilization substance protein B [Bacillus cereus R309803]
 gi|229180462|ref|ZP_04307804.1| N utilization substance protein B [Bacillus cereus 172560W]
 gi|229192394|ref|ZP_04319357.1| N utilization substance protein B [Bacillus cereus ATCC 10876]
 gi|228590971|gb|EEK48827.1| N utilization substance protein B [Bacillus cereus ATCC 10876]
 gi|228602886|gb|EEK60365.1| N utilization substance protein B [Bacillus cereus 172560W]
 gi|228620534|gb|EEK77404.1| N utilization substance protein B [Bacillus cereus R309803]
 gi|228630992|gb|EEK87629.1| N utilization substance protein B [Bacillus cereus m1550]
 gi|228636585|gb|EEK93050.1| N utilization substance protein B [Bacillus cereus BDRD-ST24]
 gi|228654067|gb|EEL09934.1| N utilization substance protein B [Bacillus cereus BDRD-Cer4]
 gi|228671792|gb|EEL27086.1| N utilization substance protein B [Bacillus cereus Rock1-15]
 gi|228701856|gb|EEL54342.1| N utilization substance protein B [Bacillus cereus Rock4-2]
 gi|228711420|gb|EEL63379.1| N utilization substance protein B [Bacillus cereus F65185]
 gi|228723335|gb|EEL74704.1| N utilization substance protein B [Bacillus cereus AH676]
 gi|228778804|gb|EEM27067.1| N utilization substance protein B [Bacillus thuringiensis Bt407]
 gi|228799214|gb|EEM46180.1| N utilization substance protein B [Bacillus thuringiensis serovar
           pakistani str. T13001]
 gi|228805125|gb|EEM51719.1| N utilization substance protein B [Bacillus thuringiensis serovar
           kurstaki str. T03a001]
 gi|228818269|gb|EEM64342.1| N utilization substance protein B [Bacillus thuringiensis serovar
           berliner ATCC 10792]
          Length = 120

 Score = 53.5 bits (127), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 43/132 (32%), Positives = 63/132 (47%), Gaps = 18/132 (13%)

Query: 24  VQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHI 83
           +QALYQ+DI G        E E      +T  + E        E+   ++ G ++ K+ I
Sbjct: 1   MQALYQMDITG--------ELEPKVAVENTLDEGEETN-----EFLESLVVGFVENKEAI 47

Query: 84  DLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEP 143
           D  I   L +KW   R+ ++  SILR  V E+     +P  V I+E + IA  F  GDE 
Sbjct: 48  DEAIRQNL-KKWKLERISIVDRSILRVAVYEMKYMEEIPHNVTINEAIEIAKTF--GDEE 104

Query: 144 --KFINAVLDKV 153
             +FIN VL  +
Sbjct: 105 SRRFINGVLSNI 116


>gi|195977499|ref|YP_002122743.1| transcription antitermination protein NusB [Streptococcus equi
           subsp. zooepidemicus MGCS10565]
 gi|195974204|gb|ACG61730.1| N utilization substance protein B-like NusB [Streptococcus equi
           subsp. zooepidemicus MGCS10565]
          Length = 139

 Score = 53.5 bits (127), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 37/140 (26%), Positives = 66/140 (47%), Gaps = 6/140 (4%)

Query: 20  RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79
           R  A QAL+ +++ G     +++    Y +  +   D +   L V   +   +++GVMD 
Sbjct: 2   RERAFQALFTMEMGGDF---LLASQFAYDYDKEVADDKQPSELPV---FLLNLVNGVMDH 55

Query: 80  KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139
           K  +D +I   L   WS  RL ++  ++LR G+ E+      P  V ++E + IA  +  
Sbjct: 56  KAELDEVIKKNLKAGWSIERLTVVDKTMLRLGLFEMTLFEETPDRVALNEIIEIAKKYSD 115

Query: 140 GDEPKFINAVLDKVSRKEEI 159
               KFIN +L +    E +
Sbjct: 116 DTSAKFINGLLSQFVSDESV 135


>gi|289450308|ref|YP_003475512.1| transcription antitermination factor NusB [Clostridiales genomosp.
           BVAB3 str. UPII9-5]
 gi|289184855|gb|ADC91280.1| transcription antitermination factor NusB [Clostridiales genomosp.
           BVAB3 str. UPII9-5]
          Length = 151

 Score = 53.5 bits (127), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 43/145 (29%), Positives = 72/145 (49%), Gaps = 11/145 (7%)

Query: 15  RRGIARLAAVQALYQIDIIGCSTTEIISEYETY-RFCADTELDVESVYLHVDLEWFRVII 73
           +R  AR  A + LYQI +    T +I ++ E + R C D     E  +   D+ +   ++
Sbjct: 2   KRREAREQAFKFLYQIQV---QTDDIPAQREYFLRSCRD-----EFGFEDADISYITGVV 53

Query: 74  HGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCI 133
            GV+      D  IS+CL +KW+  RL  +  +ILR  + E I+   V   +I +E V +
Sbjct: 54  DGVIKETAEFDRQISTCL-KKWTVDRLPCVDLAILRLALYE-IKYEHVAFSIIANEAVLL 111

Query: 134 AHDFFYGDEPKFINAVLDKVSRKEE 158
           A  +   +   +IN +L K+  KE+
Sbjct: 112 AKKYSTEESRSYINGILGKLMPKED 136


>gi|239978405|ref|ZP_04700929.1| transcription antitermination protein NusB [Streptomyces albus
           J1074]
 gi|291450301|ref|ZP_06589691.1| transcription antitermination protein NusB [Streptomyces albus
           J1074]
 gi|291353250|gb|EFE80152.1| transcription antitermination protein NusB [Streptomyces albus
           J1074]
          Length = 142

 Score = 53.5 bits (127), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 40/145 (27%), Positives = 72/145 (49%), Gaps = 12/145 (8%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           R  AR  A Q L++ D        +++++  +   +DT     S Y    +E    ++ G
Sbjct: 4   RNTARKRAFQILFEADQRSTDVLTVLADWIRH-ARSDTRQPPVSEYT---ME----LVEG 55

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
             + ++ ID LI+    + W+  R+ ++  +ILR G  ELI   + P  V++ E V +A 
Sbjct: 56  YAEHERRIDELIAQYAVD-WTLDRMPVVDRNILRLGAYELIWVDTTPDAVVLDEAVQLAK 114

Query: 136 DFFYGDEPKFINAVLDKVSRKEEIK 160
           +F   D P F+N +L   +R +E+K
Sbjct: 115 EFSTDDSPAFVNGLL---ARFKELK 136


>gi|207092122|ref|ZP_03239909.1| transcription antitermination protein NusB [Helicobacter pylori
           HPKX_438_AG0C1]
 gi|317011858|gb|ADU82466.1| transcription antitermination protein NusB [Helicobacter pylori
           Lithuania75]
          Length = 138

 Score = 53.5 bits (127), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 43/141 (30%), Positives = 68/141 (48%), Gaps = 13/141 (9%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           R  AR A V+ LY  +          S  E  +  A + L+ + +  +  L +   + +G
Sbjct: 4   RTQARGAVVELLYAFE----------SGNEEIKKIASSMLEEKKIK-NNQLAFALSLFNG 52

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
           V++R   ID LI   L + W F RL  +  +ILR G  E I        +II+E + +  
Sbjct: 53  VLERINEIDALIEPHLKD-WDFKRLGSMEKAILRLGAYE-IGFTPTQNPIIINECIELGK 110

Query: 136 DFFYGDEPKFINAVLDKVSRK 156
            +   + PKF+NA+LD +SRK
Sbjct: 111 LYAEPNTPKFLNAILDSLSRK 131


>gi|238787982|ref|ZP_04631778.1| N utilization substance protein B [Yersinia frederiksenii ATCC
           33641]
 gi|238723930|gb|EEQ15574.1| N utilization substance protein B [Yersinia frederiksenii ATCC
           33641]
          Length = 138

 Score = 53.5 bits (127), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 42/134 (31%), Positives = 65/134 (48%), Gaps = 17/134 (12%)

Query: 23  AVQALYQIDIIGCSTTEIISEYETYRFCADTELDV--ESVYLHVDLEWFRVIIHGVMDRK 80
           AVQALY   +   S  +I          AD EL    E     VD+ +FR ++ GV    
Sbjct: 13  AVQALYSWQL---SKNDI----------ADVELQFLSEQDVKDVDIAYFRELLSGVAVNA 59

Query: 81  QHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYG 140
             +D L++  L+ +     L  +  ++LR  + EL +   VP +V I+E + +A  F   
Sbjct: 60  ASLDALMAPVLSRQ--LEELGQVERAVLRIALFELSKRDDVPYKVAINEAIELAKTFGAE 117

Query: 141 DEPKFINAVLDKVS 154
           D  KF+N VLDK++
Sbjct: 118 DSHKFVNGVLDKIA 131


>gi|225023290|ref|ZP_03712482.1| hypothetical protein EIKCOROL_00142 [Eikenella corrodens ATCC
           23834]
 gi|224943935|gb|EEG25144.1| hypothetical protein EIKCOROL_00142 [Eikenella corrodens ATCC
           23834]
          Length = 145

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 45/158 (28%), Positives = 67/158 (42%), Gaps = 18/158 (11%)

Query: 10  LKLSHR--RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLE 67
           +K  +R  R  AR  AVQALYQ  +      E+        + A             D E
Sbjct: 1   MKPKNRTPRRRAREFAVQALYQAALNQLPDAEVAKNIRENEYFA-----------KADNE 49

Query: 68  WFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVII 127
            F  I  GV  +++ +  +I   L        L  I C++L A   EL +    P  VII
Sbjct: 50  LFTAIFFGVQAKRRELMQIIRPLLDRDEK--DLSPIECAVLLAAAFELRDMPETPYPVII 107

Query: 128 SEYVCIAHDFFYGDEPKFINAVLDKVS---RKEEIKRS 162
           +E + +   F   D  KF+N +LDK++   R  + KR+
Sbjct: 108 NEAIEVTKTFGGIDGHKFVNGILDKLAAELRPNDPKRA 145


>gi|172040644|ref|YP_001800358.1| transcription antitermination protein NusB [Corynebacterium
           urealyticum DSM 7109]
 gi|171851948|emb|CAQ04924.1| N utilization substance protein B [Corynebacterium urealyticum DSM
           7109]
          Length = 248

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 39/142 (27%), Positives = 65/142 (45%), Gaps = 10/142 (7%)

Query: 15  RRGI---ARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71
           RRG    AR  AV  L++ +       +I+ E        D E  ++ +      E+   
Sbjct: 38  RRGARYKARRRAVDILFEAEFRDIDPVDIMEER--AELAKDQENQIKPI-----PEYTSQ 90

Query: 72  IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
           I+ GV      ID  I+  LT  W+  R+  +  +++R    EL+    VP  V +SE +
Sbjct: 91  IVPGVASNLDAIDDAIAVHLTSDWTLDRIPAVDRAVMRVAAWELMFNADVPHRVALSEGI 150

Query: 132 CIAHDFFYGDEPKFINAVLDKV 153
            +A ++ +   P ++NAVLD V
Sbjct: 151 ELASEYSHVKAPDYVNAVLDGV 172


>gi|290579819|ref|YP_003484211.1| putative transcription termination factor [Streptococcus mutans
           NN2025]
 gi|254996718|dbj|BAH87319.1| putative transcription termination factor [Streptococcus mutans
           NN2025]
          Length = 147

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 45/148 (30%), Positives = 68/148 (45%), Gaps = 18/148 (12%)

Query: 5   DNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHV 64
           D+++DL         R  A QAL+ ++  G + T     Y TY    + E ++    L  
Sbjct: 12  DSRRDL---------RERAFQALFSLEFGGDNLTAARFAY-TYDKNEEEEAELPLFLL-- 59

Query: 65  DLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVE 124
                  +I GV D ++ ID  IS  L   W+ SRL +I  S+LR G+ E+      P  
Sbjct: 60  ------TLIQGVYDCRREIDKNISIHLKSGWTLSRLTLIDKSLLRLGLYEIKYHKETPER 113

Query: 125 VIISEYVCIAHDFFYGDEPKFINAVLDK 152
           V ++E + IA  +      KFIN VL +
Sbjct: 114 VALNEIIEIAKKYSDEKSSKFINGVLSQ 141


>gi|220702382|pdb|3D3B|A Chain A, Structural And Functional Analysis Of The E. Coli Nusb-S10
           Transcription Antitermination Complex.
 gi|220702384|pdb|3D3C|A Chain A, Structural And Functional Analysis Of The E. Coli Nusb-S10
           Transcription Antitermination Complex.
 gi|220702386|pdb|3D3C|B Chain B, Structural And Functional Analysis Of The E. Coli Nusb-S10
           Transcription Antitermination Complex.
 gi|220702388|pdb|3D3C|C Chain C, Structural And Functional Analysis Of The E. Coli Nusb-S10
           Transcription Antitermination Complex
          Length = 141

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 41/132 (31%), Positives = 65/132 (49%), Gaps = 13/132 (9%)

Query: 23  AVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQH 82
           AVQALY   +      ++      Y+F A  E DV+ V    D+ +FR ++ GV     +
Sbjct: 15  AVQALYSWQLSQNDIADV-----EYQFLA--EQDVKDV----DVLYFRELLAGVATNTAY 63

Query: 83  IDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDE 142
           +D L+   L+       L  +  ++LR  + EL +   VP +V I+E + +A  F   D 
Sbjct: 64  LDGLMKPYLSR--LLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDS 121

Query: 143 PKFINAVLDKVS 154
            KF+N VLDK +
Sbjct: 122 HKFVNGVLDKAA 133


>gi|24380206|ref|NP_722161.1| transcription antitermination protein NusB [Streptococcus mutans
           UA159]
 gi|32171640|sp|Q8DSE9|NUSB_STRMU RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|24378212|gb|AAN59467.1|AE015011_6 putative transcription termination factor [Streptococcus mutans
           UA159]
          Length = 142

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 45/148 (30%), Positives = 68/148 (45%), Gaps = 18/148 (12%)

Query: 5   DNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHV 64
           D+++DL         R  A QAL+ ++  G + T     Y TY    + E ++    L  
Sbjct: 7   DSRRDL---------RERAFQALFSLEFGGDNLTAARFAY-TYDKNEEEEAELPLFLL-- 54

Query: 65  DLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVE 124
                  +I GV D ++ ID  IS  L   W+ SRL +I  S+LR G+ E+      P  
Sbjct: 55  ------TLIQGVSDCRREIDKNISIHLKSGWTLSRLTLIDKSLLRLGLYEIKYHKETPER 108

Query: 125 VIISEYVCIAHDFFYGDEPKFINAVLDK 152
           V ++E + IA  +      KFIN VL +
Sbjct: 109 VALNEIIEIAKKYSDEKSSKFINGVLSQ 136


>gi|300721781|ref|YP_003711059.1| transcription termination; L factor [Xenorhabdus nematophila ATCC
           19061]
 gi|297628276|emb|CBJ88837.1| transcription termination; L factor [Xenorhabdus nematophila ATCC
           19061]
          Length = 138

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 42/139 (30%), Positives = 65/139 (46%), Gaps = 13/139 (9%)

Query: 23  AVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQH 82
           AVQA+Y   +   S  +I  E+ +       E DV  V    D+ +FR ++ GV      
Sbjct: 13  AVQAIYSWQLSNNSIADIELEFLS-------EQDVTGV----DITYFRELLSGVAVNATK 61

Query: 83  IDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDE 142
           +D L++  L+ +     L  +  +ILR  + EL     VP +V I+E + +A  F   D 
Sbjct: 62  LDALMAPYLSRQ--LEELGQVEKAILRVAMFELSFRDDVPYKVAINEGIELAKTFGAEDS 119

Query: 143 PKFINAVLDKVSRKEEIKR 161
            KF+N VLDK       K+
Sbjct: 120 HKFVNGVLDKAGPAARRKK 138


>gi|262283503|ref|ZP_06061269.1| transcription antitermination protein NusB [Streptococcus sp.
           2_1_36FAA]
 gi|262260994|gb|EEY79694.1| transcription antitermination protein NusB [Streptococcus sp.
           2_1_36FAA]
          Length = 141

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 28/86 (32%), Positives = 46/86 (53%)

Query: 72  IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
           +++GVM  K  +D  I+  L   W+  RL ++  +ILR G+ EL+E    P  V ++E +
Sbjct: 56  LVNGVMQSKSVLDDKITQYLKAGWTLDRLTLVEKNILRLGLYELLEYDETPQLVAVNEAI 115

Query: 132 CIAHDFFYGDEPKFINAVLDKVSRKE 157
            +A  F      KFIN +L +   +E
Sbjct: 116 ELAKKFSDEKSSKFINGILSQFVTEE 141


>gi|162455551|ref|YP_001617918.1| N utilization substance protein B [Sorangium cellulosum 'So ce 56']
 gi|189035908|sp|A9ET18|NUSB_SORC5 RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|161166133|emb|CAN97438.1| N utilization substance protein B [Sorangium cellulosum 'So ce 56']
          Length = 140

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 37/139 (26%), Positives = 63/139 (45%), Gaps = 12/139 (8%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           R   R AA+Q L+ ++  G S   +++      F  +T  D E    + D      ++ G
Sbjct: 4   RSTGREAALQMLFAVEAGGSSAPRVVAT-----FWRETPGDPEG-RAYAD-----EVVVG 52

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
           V +    +D  I    T  W   R+  +  ++LR G  EL+    VP  VI+ E V +A 
Sbjct: 53  VAEDLAAVDEAIRKAST-NWRLERMARVDRNVLRLGAWELMNRPEVPRAVILDEAVELAK 111

Query: 136 DFFYGDEPKFINAVLDKVS 154
            +   +   F+N VLD+++
Sbjct: 112 RYGSEESGAFVNGVLDRIA 130


>gi|331697319|ref|YP_004333558.1| NusB antitermination factor [Pseudonocardia dioxanivorans CB1190]
 gi|326952008|gb|AEA25705.1| NusB antitermination factor [Pseudonocardia dioxanivorans CB1190]
          Length = 139

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 25/84 (29%), Positives = 49/84 (58%), Gaps = 1/84 (1%)

Query: 71  VIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEY 130
           +++ GV++ ++ ID L++    E W+ +R+  +  ++LR GV EL+    +   V I+E 
Sbjct: 47  LLVQGVVEHRERIDQLLAEH-AEGWTVARMPAVDRTLLRIGVFELLWVDEIDDPVAITEA 105

Query: 131 VCIAHDFFYGDEPKFINAVLDKVS 154
           V +A      D P+F+N VL +++
Sbjct: 106 VELARTLSTDDSPRFLNGVLGRIA 129


>gi|307730712|ref|YP_003907936.1| NusB antitermination factor [Burkholderia sp. CCGE1003]
 gi|307585247|gb|ADN58645.1| NusB antitermination factor [Burkholderia sp. CCGE1003]
          Length = 144

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 42/147 (28%), Positives = 65/147 (44%), Gaps = 15/147 (10%)

Query: 10  LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF 69
           +K + RR  +R  A Q LYQ  + G    EI           D +L     +   D E  
Sbjct: 1   MKSARRR--SRELATQGLYQWLLSGSPGGEI-----------DAQLRGAQGFDKADHEHL 47

Query: 70  RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISE 129
             I+HGV+   + +   I+ CL       +L  +  ++L     EL     +P  V+I+E
Sbjct: 48  DAILHGVIRDSEALSADIAPCLDR--PIDQLSPVERAVLLVAAFELKNHIDIPYRVVINE 105

Query: 130 YVCIAHDFFYGDEPKFINAVLDKVSRK 156
            V +A  F   D  K++N VLDK++ K
Sbjct: 106 AVELAKTFGGADGYKYVNGVLDKLAAK 132


>gi|323527047|ref|YP_004229200.1| NusB antitermination factor [Burkholderia sp. CCGE1001]
 gi|323384049|gb|ADX56140.1| NusB antitermination factor [Burkholderia sp. CCGE1001]
          Length = 144

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 42/147 (28%), Positives = 65/147 (44%), Gaps = 15/147 (10%)

Query: 10  LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF 69
           +K + RR  +R  A Q LYQ  + G    EI           D +L     +   D E  
Sbjct: 1   MKSARRR--SRELATQGLYQWLLSGSPGGEI-----------DAQLRGAQGFDKADHEHL 47

Query: 70  RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISE 129
             I+HGV+   + +   I+ CL       +L  +  ++L     EL     +P  V+I+E
Sbjct: 48  DAILHGVIRDSEALSADIAPCLDR--PIDQLSPVERAVLLVAAFELKNHIDIPYRVVINE 105

Query: 130 YVCIAHDFFYGDEPKFINAVLDKVSRK 156
            V +A  F   D  K++N VLDK++ K
Sbjct: 106 AVELAKTFGGADGYKYVNGVLDKLAAK 132


>gi|218549924|ref|YP_002383715.1| transcription antitermination protein NusB [Escherichia fergusonii
           ATCC 35469]
 gi|226738904|sp|B7LMH1|NUSB_ESCF3 RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|218357465|emb|CAQ90104.1| transcription antitermination protein [Escherichia fergusonii ATCC
           35469]
 gi|324114635|gb|EGC08603.1| transcription antitermination protein NusB [Escherichia fergusonii
           B253]
 gi|325498301|gb|EGC96160.1| transcription antitermination protein NusB [Escherichia fergusonii
           ECD227]
          Length = 139

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 41/132 (31%), Positives = 65/132 (49%), Gaps = 13/132 (9%)

Query: 23  AVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQH 82
           AVQALY   +      ++      Y+F A  E DV+ V    D+ +FR ++ GV     +
Sbjct: 13  AVQALYSWQLSRNDIADV-----EYQFLA--EQDVKDV----DVLYFRELLAGVATNTAY 61

Query: 83  IDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDE 142
           +D L+   L+       L  +  ++LR  + EL +   VP +V I+E + +A  F   D 
Sbjct: 62  LDGLMKPYLSR--LLEELGQVEKAVLRIALFELSKRSDVPYKVAINEAIELAKTFGAEDS 119

Query: 143 PKFINAVLDKVS 154
            KF+N VLDK +
Sbjct: 120 HKFVNGVLDKAA 131


>gi|168215452|ref|ZP_02641077.1| N utilization substance protein B [Clostridium perfringens NCTC
           8239]
 gi|182382114|gb|EDT79593.1| N utilization substance protein B [Clostridium perfringens NCTC
           8239]
          Length = 135

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 39/141 (27%), Positives = 66/141 (46%), Gaps = 10/141 (7%)

Query: 15  RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74
            R  +R   +Q  YQ++I   +  E    + ++    D   D       +DL + +  + 
Sbjct: 2   NRVKSREYLLQLAYQMEITSETALET---FNSFMENEDISKD------DLDLAYIKSGLL 52

Query: 75  GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134
           G+ + K+ +D LI S L  KW  +R+  +  SILR    E++    VP +V I+E + + 
Sbjct: 53  GIEENKEKLDSLIESQLV-KWKLNRISKVNLSILRISTYEILFAEDVPGKVSINEAIELC 111

Query: 135 HDFFYGDEPKFINAVLDKVSR 155
             +       FIN VLDKV +
Sbjct: 112 KKYSDNKSVSFINGVLDKVYK 132


>gi|261867676|ref|YP_003255598.1| transcription antitermination protein NusB [Aggregatibacter
           actinomycetemcomitans D11S-1]
 gi|261413008|gb|ACX82379.1| transcription antitermination factor NusB [Aggregatibacter
           actinomycetemcomitans D11S-1]
          Length = 141

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 48/144 (33%), Positives = 75/144 (52%), Gaps = 14/144 (9%)

Query: 11  KLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFR 70
           K+S RR  AR  AVQALY    I  ++ EI+       F   TE D++ V    D  +FR
Sbjct: 7   KISPRRR-ARECAVQALYSW-AISKNSPEIVE----LNFI--TEQDMKGV----DTPYFR 54

Query: 71  VIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEY 130
            +    ++  + +D  +  C  ++ +   LD I  +ILR  V EL    +VP +V+I+E 
Sbjct: 55  KLFRQTVENVEAVDATMQ-CYLDR-TLEELDPIEKAILRLAVYELQFEANVPYKVVINEA 112

Query: 131 VCIAHDFFYGDEPKFINAVLDKVS 154
           + +A  F   +  K+IN VLDK++
Sbjct: 113 IEVAKVFGADESHKYINGVLDKIA 136


>gi|317405459|gb|EFV85770.1| N utilization substance protein B [Achromobacter xylosoxidans C54]
          Length = 163

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 42/147 (28%), Positives = 68/147 (46%), Gaps = 24/147 (16%)

Query: 24  VQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHI 83
           +Q +Y   + G   T+   E + +    DTE      +   D +WF+ ++HGV+      
Sbjct: 32  LQGVYAWLLRGGEGTQDAGEIDAH--LRDTE-----EFSEADAQWFKTLLHGVLRE---- 80

Query: 84  DLLISSCLTEKWS------FSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDF 137
               +  L E+++       + L  +   IL  G  ELI    VP +V I+E V +A  F
Sbjct: 81  ----APALRERFTPYVDRPLAELSPVEHGILLIGSFELIHHVEVPYKVAINEAVELAKSF 136

Query: 138 FYGDEPKFINAVLDKVS---RKEEIKR 161
              D  KF+N VLDK++   R  E+K+
Sbjct: 137 GGTDGFKFVNGVLDKLAADVRSHEMKK 163


>gi|110803071|ref|YP_699107.1| transcription antitermination protein NusB [Clostridium perfringens
           SM101]
 gi|119390760|sp|Q0SS00|NUSB_CLOPS RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|110683572|gb|ABG86942.1| N utilization substance protein B [Clostridium perfringens SM101]
          Length = 135

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 39/141 (27%), Positives = 66/141 (46%), Gaps = 10/141 (7%)

Query: 15  RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74
            R  +R   +Q  YQ++I   +  E    + ++    D   D       +DL + +  + 
Sbjct: 2   NRVKSREYLLQLAYQMEITSETALET---FNSFMENEDISKD------DLDLAYIKSGLL 52

Query: 75  GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134
           G+ + K+ +D LI S L  KW  +R+  +  SILR    E++    VP +V I+E + + 
Sbjct: 53  GIEENKEKLDSLIESQLV-KWKLNRISKVNLSILRISTYEILFAEDVPGKVSINEAIELC 111

Query: 135 HDFFYGDEPKFINAVLDKVSR 155
             +       FIN VLDKV +
Sbjct: 112 KKYSDNKSVSFINGVLDKVYK 132


>gi|18310806|ref|NP_562740.1| transcription antitermination protein NusB [Clostridium perfringens
           str. 13]
 gi|110801167|ref|YP_696507.1| transcription antitermination protein NusB [Clostridium perfringens
           ATCC 13124]
 gi|168206122|ref|ZP_02632127.1| N utilization substance protein B [Clostridium perfringens E str.
           JGS1987]
 gi|168210813|ref|ZP_02636438.1| N utilization substance protein B [Clostridium perfringens B str.
           ATCC 3626]
 gi|168214398|ref|ZP_02640023.1| N utilization substance protein B [Clostridium perfringens CPE str.
           F4969]
 gi|169343548|ref|ZP_02864547.1| N utilization substance protein B [Clostridium perfringens C str.
           JGS1495]
 gi|182625668|ref|ZP_02953437.1| N utilization substance protein B [Clostridium perfringens D str.
           JGS1721]
 gi|22095945|sp|Q8XJD6|NUSB_CLOPE RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|119390759|sp|Q0TPD3|NUSB_CLOP1 RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|18145487|dbj|BAB81530.1| probable N utilization substance protein B [Clostridium perfringens
           str. 13]
 gi|110675814|gb|ABG84801.1| N utilization substance protein B [Clostridium perfringens ATCC
           13124]
 gi|169298108|gb|EDS80198.1| N utilization substance protein B [Clostridium perfringens C str.
           JGS1495]
 gi|170662434|gb|EDT15117.1| N utilization substance protein B [Clostridium perfringens E str.
           JGS1987]
 gi|170711117|gb|EDT23299.1| N utilization substance protein B [Clostridium perfringens B str.
           ATCC 3626]
 gi|170714129|gb|EDT26311.1| N utilization substance protein B [Clostridium perfringens CPE str.
           F4969]
 gi|177909070|gb|EDT71545.1| N utilization substance protein B [Clostridium perfringens D str.
           JGS1721]
          Length = 135

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 39/141 (27%), Positives = 66/141 (46%), Gaps = 10/141 (7%)

Query: 15  RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74
            R  +R   +Q  YQ++I   +  E    + ++    D   D       +DL + +  + 
Sbjct: 2   NRVKSREYLLQLAYQMEITSETALET---FNSFMENEDISKD------DLDLAYIKSGLL 52

Query: 75  GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134
           G+ + K+ +D LI S L  KW  +R+  +  SILR    E++    VP +V I+E + + 
Sbjct: 53  GIEENKEKLDSLIESQLV-KWKLNRISKVNLSILRISTYEILFAEDVPGKVSINEAIELC 111

Query: 135 HDFFYGDEPKFINAVLDKVSR 155
             +       FIN VLDKV +
Sbjct: 112 KKYSDNKSVSFINGVLDKVYK 132


>gi|90415724|ref|ZP_01223658.1| transcription antitermination protein NusB [marine gamma
           proteobacterium HTCC2207]
 gi|90333047|gb|EAS48217.1| transcription antitermination protein NusB [marine gamma
           proteobacterium HTCC2207]
          Length = 146

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 43/139 (30%), Positives = 63/139 (45%), Gaps = 13/139 (9%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           R  AR   VQALY  D+      +I +E+            V++    VD E F  I+ G
Sbjct: 7   RQKARRLLVQALYSWDMGKTDLIDIEAEFH-----------VDNNMATVDTELFHEILFG 55

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
           V      ID      L       +LD +  +ILR    E++    VP +V+I+E V +A 
Sbjct: 56  VPKHMTEIDAAYEPYLDRDQD--QLDPVSQAILRLSTYEMLHRIDVPYKVVINEGVNLAK 113

Query: 136 DFFYGDEPKFINAVLDKVS 154
            F   D  K+IN +LD+V+
Sbjct: 114 TFGPTDAFKYINGILDRVA 132


>gi|27363793|ref|NP_759321.1| transcription antitermination protein NusB [Vibrio vulnificus
           CMCP6]
 gi|37679049|ref|NP_933658.1| transcription antitermination protein NusB [Vibrio vulnificus
           YJ016]
 gi|320157202|ref|YP_004189581.1| 6,7-dimethyl-8-ribityllumazine synthase [Vibrio vulnificus
           MO6-24/O]
 gi|29611804|sp|Q8DFA0|NUSB_VIBVU RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|39931709|sp|Q7MN52|NUSB_VIBVY RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|27359910|gb|AAO08848.1| transcription antitermination factor NusB [Vibrio vulnificus CMCP6]
 gi|37197791|dbj|BAC93629.1| transcription termination factor [Vibrio vulnificus YJ016]
 gi|319932514|gb|ADV87378.1| 6,7-dimethyl-8-ribityllumazine synthase [Vibrio vulnificus
           MO6-24/O]
          Length = 155

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 45/153 (29%), Positives = 73/153 (47%), Gaps = 16/153 (10%)

Query: 10  LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVES--------VY 61
           +K + RR  AR  A+QA+Y   I    T E ++  E  +F A  + D E           
Sbjct: 5   VKPAARRN-ARQFALQAIYSWQI----TKENVATIEA-QFLAGEKYDEEEHRAAEPALAA 58

Query: 62  LHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSV 121
              D+ +FR ++ GV+     +D  I   ++       LDM+  ++LR  + E+     V
Sbjct: 59  PETDVAYFRDLLTGVVLSHTELDSKIRPYVSR--PMQDLDMMELALLRLAMYEMTRREDV 116

Query: 122 PVEVIISEYVCIAHDFFYGDEPKFINAVLDKVS 154
           P +V+I+E + +A  F   D  KF+N VLDK +
Sbjct: 117 PYKVVINEAIELAKVFAAEDSHKFVNGVLDKAA 149


>gi|262196667|ref|YP_003267876.1| NusB antitermination factor [Haliangium ochraceum DSM 14365]
 gi|262080014|gb|ACY15983.1| NusB antitermination factor [Haliangium ochraceum DSM 14365]
          Length = 150

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 43/145 (29%), Positives = 69/145 (47%), Gaps = 12/145 (8%)

Query: 10  LKLSHRRGIARLAAVQALYQIDIIGCS-TTEIISEYETYRFCADTELDVESVYLHVDLEW 68
           +K+  RR  AR  A+Q LY +D+      T  + EY   RF  D  +D E+       ++
Sbjct: 1   MKVGARR-RARSYALQVLYALDLNPLEEPTRALLEY-AGRF--DLRIDEEAG------DF 50

Query: 69  FRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIIS 128
            R +I  V    + ID  I +  +  W   R+  +  ++LR  V EL +       V+I+
Sbjct: 51  ARSLIEQVYPHLERIDERIQTA-SRNWRIERMSRVDRNVLRLAVGELSQPDGAAARVVIN 109

Query: 129 EYVCIAHDFFYGDEPKFINAVLDKV 153
           E V +A  F   + P F+N +LD+V
Sbjct: 110 EAVELAKRFGTTESPAFVNGILDRV 134


>gi|251783265|ref|YP_002997570.1| transcription antitermination protein NusB [Streptococcus
           dysgalactiae subsp. equisimilis GGS_124]
 gi|242391897|dbj|BAH82356.1| transcription antitermination protein [Streptococcus dysgalactiae
           subsp. equisimilis GGS_124]
          Length = 155

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 41/155 (26%), Positives = 74/155 (47%), Gaps = 23/155 (14%)

Query: 2   TIQDNKKDLKLSHRRGIARLAAVQALYQIDIIG--CSTTEIISEYETYRFCADTELDVES 59
           + Q++++DL         R  A QAL+ +++ G     ++   +Y+      +  L++  
Sbjct: 10  SFQNSRRDL---------RERAFQALFSMEMGGDFLVASQFAYDYDKVVDEGNEALELPI 60

Query: 60  VYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECH 119
             L+        +++GV D K+ +D  IS  L   WS  RL M   ++LR G+ E+   +
Sbjct: 61  FLLN--------LVNGVNDHKEELDRTISEHLKTGWSLERLTMTDKTLLRLGLFEIKYFN 112

Query: 120 SVPVEVIISEYVCIAHDFFYGDE--PKFINAVLDK 152
             P  V ++E + +A    Y DE   KFIN +L +
Sbjct: 113 ETPDRVALNEIIEVAKK--YSDETSAKFINGLLSQ 145


>gi|238760660|ref|ZP_04621785.1| N utilization substance protein B [Yersinia aldovae ATCC 35236]
 gi|238701125|gb|EEP93717.1| N utilization substance protein B [Yersinia aldovae ATCC 35236]
          Length = 138

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 43/134 (32%), Positives = 64/134 (47%), Gaps = 17/134 (12%)

Query: 23  AVQALYQIDIIGCSTTEIISEYETYRFCADTELDV--ESVYLHVDLEWFRVIIHGVMDRK 80
           AVQALY   +   S  +I          AD EL    E     VD+ +FR ++ GV    
Sbjct: 13  AVQALYSWQL---SKNDI----------ADVELQFLSEQDVKDVDIAYFRELLSGVAVHA 59

Query: 81  QHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYG 140
             +D L+   L+ +     L  +  ++LR  + EL +   VP +V I+E + +A  F   
Sbjct: 60  ASLDALMEPFLSRQ--LEELGQVERAVLRIALFELSKRQDVPYKVAINEAIELAKTFGAE 117

Query: 141 DEPKFINAVLDKVS 154
           D  KF+N VLDKV+
Sbjct: 118 DSHKFVNGVLDKVA 131


>gi|163781900|ref|ZP_02176900.1| transcription antitermination protein NusB [Hydrogenivirga sp.
           128-5-R1-1]
 gi|159883120|gb|EDP76624.1| transcription antitermination protein NusB [Hydrogenivirga sp.
           128-5-R1-1]
          Length = 144

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 40/138 (28%), Positives = 62/138 (44%), Gaps = 11/138 (7%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           R  AR  ++  LY+ DI G S   I  EY   +   + E+           E+   ++  
Sbjct: 4   RKKARENSLMVLYRWDIRGDSIDRIREEYVEEKGIKNREI----------REYMDKLLST 53

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
           V D+   ID LIS   +E WSF RL  I  ++LR GV EL+           ++Y+ I  
Sbjct: 54  VRDKLPEIDSLISEY-SEGWSFDRLGYIERNVLRLGVAELLYADPPDPGRAFNDYLDIVK 112

Query: 136 DFFYGDEPKFINAVLDKV 153
            +      +F+N +L K+
Sbjct: 113 RYADRKAARFVNGILSKI 130


>gi|150016575|ref|YP_001308829.1| NusB antitermination factor [Clostridium beijerinckii NCIMB 8052]
 gi|189035883|sp|A6LU43|NUSB_CLOB8 RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|149903040|gb|ABR33873.1| NusB antitermination factor [Clostridium beijerinckii NCIMB 8052]
          Length = 133

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 42/142 (29%), Positives = 68/142 (47%), Gaps = 14/142 (9%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           R ++R  A++ L+     G + ++   E     F  + E D++     +DL + + ++ G
Sbjct: 3   RKLSREKAMELLF-----GMTLSKDTMEDAVEAFVENYEGDIK----EIDLTYVKQVLIG 53

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
           V + K+ ID +I   L   W   R+  +  SILR    EL+    VP  V I+E + I  
Sbjct: 54  VNNNKEAIDKVIQENL-HNWKIERISKVNLSILRIATYELLYDKEVPRGVAINEALEITR 112

Query: 136 DFFYGDEPK--FINAVLDKVSR 155
              Y DE    FIN VLDK+ +
Sbjct: 113 R--YSDEKSVSFINGVLDKIKQ 132


>gi|315639636|ref|ZP_07894776.1| N utilization substance protein B [Enterococcus italicus DSM 15952]
 gi|315484597|gb|EFU75053.1| N utilization substance protein B [Enterococcus italicus DSM 15952]
          Length = 150

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 39/141 (27%), Positives = 64/141 (45%), Gaps = 11/141 (7%)

Query: 20  RLAAVQALYQIDI-IGCSTTEIIS---EYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           R  AVQ+L+ +D     S  + I+   E   Y    + E +    YL    +W   ++ G
Sbjct: 11  REMAVQSLFPLDFSTEFSKQDAIAHAIEVNQYDLLDEEEENFVPDYL----DW---LVSG 63

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
           V + K  +D  I S L   W   RL  +  +ILR  + E+     VP +V+++E + +  
Sbjct: 64  VCEHKNELDKEIESFLRPGWKIGRLAKMDVTILRLAIFEMQHAEDVPNKVVLNEAIELTK 123

Query: 136 DFFYGDEPKFINAVLDKVSRK 156
            F      KF+N VL  ++ K
Sbjct: 124 TFSDDQSRKFVNGVLSSINNK 144


>gi|296101538|ref|YP_003611684.1| transcription antitermination protein NusB [Enterobacter cloacae
           subsp. cloacae ATCC 13047]
 gi|295055997|gb|ADF60735.1| transcription antitermination protein NusB [Enterobacter cloacae
           subsp. cloacae ATCC 13047]
          Length = 139

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 40/132 (30%), Positives = 65/132 (49%), Gaps = 13/132 (9%)

Query: 23  AVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQH 82
           AVQALY   +      ++      Y+F   +E DV+ V    D+ +FR ++ GV     +
Sbjct: 13  AVQALYSWQLSQNDIADV-----EYQFL--SEQDVKDV----DVLYFRELLSGVATNSAY 61

Query: 83  IDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDE 142
           +D L+   L+       L  +  ++LR  + EL +   VP +V I+E + +A  F   D 
Sbjct: 62  LDGLMKPYLSR--LLEELGQVEKAVLRIALFELSKRDDVPYKVAINEAIELAKTFGAEDS 119

Query: 143 PKFINAVLDKVS 154
            KF+N VLDK +
Sbjct: 120 HKFVNGVLDKAA 131


>gi|237736360|ref|ZP_04566841.1| transcription antitermination protein NusB [Fusobacterium
           mortiferum ATCC 9817]
 gi|229421402|gb|EEO36449.1| transcription antitermination protein NusB [Fusobacterium
           mortiferum ATCC 9817]
          Length = 132

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 40/143 (27%), Positives = 74/143 (51%), Gaps = 15/143 (10%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           R +AR    + +++ ++   ST E++  Y       D  L  E+     +L + +  ++G
Sbjct: 3   RRVAREELFKLVFESELKEESTKEVLDNY----LKRDEVLTNEN-----ELAFIKKYMNG 53

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
           + +    I   I++ +T  WSF R+  +  ++LR  V EL+ C + P E++++E V +A 
Sbjct: 54  IAENNDRILETINNNIT-GWSFERIGNVEKALLRCSVYELL-CETTPHEIVVNEVVELAK 111

Query: 136 DFFYGDEP--KFINAVLDKVSRK 156
              YGDE   +F+N VL K+  K
Sbjct: 112 --LYGDEKTSEFVNGVLAKIINK 132


>gi|57233932|ref|YP_181990.1| N utilization substance protein B [Dehalococcoides ethenogenes 195]
 gi|119390764|sp|Q3Z709|NUSB_DEHE1 RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|57224380|gb|AAW39437.1| N utilization substance protein B [Dehalococcoides ethenogenes 195]
          Length = 143

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 42/146 (28%), Positives = 68/146 (46%), Gaps = 16/146 (10%)

Query: 12  LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71
           ++  R  AR   +QALY+ D+ G +  +++    T      TE + E +        FR+
Sbjct: 1   MTTSRRKAREIVLQALYEQDLAGHNAEDVLKRLLTE--TPQTEENAEFI--------FRL 50

Query: 72  IIHGVMDRKQHIDLLISSC--LTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISE 129
               V    +H DLL  +       W   +L  I  ++LR  + E+I  + VP++V I+E
Sbjct: 51  TNAIV----KHKDLLDENIRQFASAWPVEQLSYIDRNVLRLAIFEIIHENDVPIKVAINE 106

Query: 130 YVCIAHDFFYGDEPKFINAVLDKVSR 155
            V +A  F      +FIN VL  VS+
Sbjct: 107 AVELAKSFGGNSSARFINGVLSSVSK 132


>gi|289550704|ref|YP_003471608.1| Transcription termination protein NusB [Staphylococcus lugdunensis
           HKU09-01]
 gi|315658200|ref|ZP_07911072.1| transcription antitermination factor NusB [Staphylococcus
           lugdunensis M23590]
 gi|289180236|gb|ADC87481.1| Transcription termination protein NusB [Staphylococcus lugdunensis
           HKU09-01]
 gi|315496529|gb|EFU84852.1| transcription antitermination factor NusB [Staphylococcus
           lugdunensis M23590]
          Length = 128

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 42/139 (30%), Positives = 64/139 (46%), Gaps = 13/139 (9%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           R  +R  A Q L+Q+++        +S  E   F  D   D++  ++H    W   ++ G
Sbjct: 3   RKESRTQAFQTLFQLEMKDSD----LSISEAINFIKDDHPDLDFTFIH----W---LVTG 51

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
           V D +  +D  I   L + WS +RL      ILR    EL+     P +VII+E V +  
Sbjct: 52  VKDHEPILDKAIEPHLKD-WSLNRLLKTDRIILRMATFELLHS-DTPPKVIINEAVELTK 109

Query: 136 DFFYGDEPKFINAVLDKVS 154
            F   D  KFIN VL  ++
Sbjct: 110 QFSDDDHYKFINGVLSNIN 128


>gi|229820523|ref|YP_002882049.1| NusB antitermination factor [Beutenbergia cavernae DSM 12333]
 gi|259514802|sp|C5C681|NUSB_BEUC1 RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|229566436|gb|ACQ80287.1| NusB antitermination factor [Beutenbergia cavernae DSM 12333]
          Length = 153

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 29/90 (32%), Positives = 46/90 (51%), Gaps = 1/90 (1%)

Query: 72  IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
           I+ GV   +  ID L+ +   + WS  R+  +  +ILR GV EL+    VP  V + E V
Sbjct: 57  IVEGVAAHQARIDELLETY-AQGWSLERMPAVDRAILRIGVWELLFNDDVPDAVAVDEAV 115

Query: 132 CIAHDFFYGDEPKFINAVLDKVSRKEEIKR 161
            +A +    D P F+N +L ++ R   + R
Sbjct: 116 ALAAELSTDDSPTFVNGLLGQLLRLAPVLR 145


>gi|50954771|ref|YP_062059.1| transcription termination factor [Leifsonia xyli subsp. xyli str.
           CTCB07]
 gi|71648799|sp|Q6AF91|NUSB_LEIXX RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|50951253|gb|AAT88954.1| transcription termination factor [Leifsonia xyli subsp. xyli str.
           CTCB07]
          Length = 144

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 46/150 (30%), Positives = 72/150 (48%), Gaps = 11/150 (7%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           R  AR  A+  L+  D+   S    ++  E  R  A  E   E+ +L+      R I+ G
Sbjct: 4   RTKARKRALDLLFSADVRQISLAHALA-VEAER--AANEPAREASWLYA-----REIVDG 55

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
           V+D ++ ID  I +   + W+ +R+  +  +ILR GV EL+    VP  V ISE V  A 
Sbjct: 56  VIDNQEEIDEQIET-YAQGWTLARMPAVDRAILRIGVWELLFNDQVPDGVAISEAVEAAT 114

Query: 136 DFFYGDEPKFINAVLDKVSRKEEIKRSGCV 165
                D   F+N +L K+++ +   R G V
Sbjct: 115 VLSTDDSAGFVNGLLAKIAQNK--PRDGEV 142


>gi|313676012|ref|YP_004054008.1| nusb antitermination factor [Marivirga tractuosa DSM 4126]
 gi|312942710|gb|ADR21900.1| NusB antitermination factor [Marivirga tractuosa DSM 4126]
          Length = 382

 Score = 52.8 bits (125), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 29/103 (28%), Positives = 57/103 (55%), Gaps = 5/103 (4%)

Query: 65  DLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVE 124
           D E+F+ +    ++     + ++S    + W+  R+ ++   IL+  V E++   S+PV+
Sbjct: 274 DSEFFKDLFTNTINNDDEYEKIVSD-FAKNWASERIAIVDMIILKMAVSEMLNFPSIPVK 332

Query: 125 VIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEE----IKRSG 163
           V I+EY+ ++ ++       F+N +LDK+S K E    IK+SG
Sbjct: 333 VTINEYIELSKNYSTQKSKIFVNGMLDKISAKLEKDGKIKKSG 375


>gi|251790668|ref|YP_003005389.1| transcription antitermination protein NusB [Dickeya zeae Ech1591]
 gi|247539289|gb|ACT07910.1| NusB antitermination factor [Dickeya zeae Ech1591]
          Length = 139

 Score = 52.8 bits (125), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 43/134 (32%), Positives = 64/134 (47%), Gaps = 17/134 (12%)

Query: 23  AVQALYQIDIIGCSTTEIISEYETYRFCADTELDV--ESVYLHVDLEWFRVIIHGVMDRK 80
           AVQALY   +   S  +I          AD EL    E     VD+ +FR ++ GV  + 
Sbjct: 13  AVQALYSWQL---SKNDI----------ADVELQFLSEQDVKGVDIAYFRELLAGVATQA 59

Query: 81  QHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYG 140
           + +D  ++  L+ +     L  +  +ILR  V EL +   VP +V I+E + +A  F   
Sbjct: 60  EKLDAQMAPYLSRQ--LEELGQVERAILRLAVYELSKREDVPYKVAINEAIELAKVFGAE 117

Query: 141 DEPKFINAVLDKVS 154
           D  KF+N VLDK  
Sbjct: 118 DSHKFVNGVLDKAG 131


>gi|262202262|ref|YP_003273470.1| transcription antitermination factor NusB [Gordonia bronchialis DSM
           43247]
 gi|262085609|gb|ACY21577.1| transcription antitermination factor NusB [Gordonia bronchialis DSM
           43247]
          Length = 163

 Score = 52.8 bits (125), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 42/145 (28%), Positives = 71/145 (48%), Gaps = 9/145 (6%)

Query: 10  LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF 69
           +K    R  AR  AV  L++ +    S  ++++E    R    ++  V +++     ++ 
Sbjct: 1   MKQPGTRHKARRRAVDILFEAEAKQVSPAQLVAER---RELVRSDESVGAIH-----DYT 52

Query: 70  RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISE 129
             +I G+ D ++ ID +ISS L E W+  RL  +  +ILR    EL     V   VI+ E
Sbjct: 53  ARVIEGLADDQEQIDSVISSHLRE-WTLPRLPAVDRAILRLATWELFNSVDVDTVVIVDE 111

Query: 130 YVCIAHDFFYGDEPKFINAVLDKVS 154
            V +A +    D P F+N VL K++
Sbjct: 112 AVELAKELSTDDSPAFVNGVLAKIA 136


>gi|308276510|gb|ADO26409.1| N utilization substance protein B (Protein nusB) [Corynebacterium
           pseudotuberculosis I19]
          Length = 210

 Score = 52.8 bits (125), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 38/144 (26%), Positives = 64/144 (44%), Gaps = 7/144 (4%)

Query: 19  ARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMD 78
           AR  A + LY+ ++       II +     +  D  L V  V  +      + I+ G   
Sbjct: 34  ARRRAAEVLYEAEVRDVDPVAIIEDRIALSYHQD--LGVAPVAAYT-----KEIVAGTAQ 86

Query: 79  RKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFF 138
               ID LI++ L E W   R+  +  ++LR  V ELI    VPV   + + V +   + 
Sbjct: 87  ELDRIDGLIAANLAENWELERISAVDRAVLRVAVWELIFNEDVPVATAVVDGVELVSQYS 146

Query: 139 YGDEPKFINAVLDKVSRKEEIKRS 162
               P ++NA+LD +++  E  R+
Sbjct: 147 TDVAPAYVNALLDSIAQNIESHRA 170


>gi|254445455|ref|ZP_05058931.1| transcription antitermination factor NusB [Verrucomicrobiae
           bacterium DG1235]
 gi|198259763|gb|EDY84071.1| transcription antitermination factor NusB [Verrucomicrobiae
           bacterium DG1235]
          Length = 133

 Score = 52.8 bits (125), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 30/96 (31%), Positives = 53/96 (55%), Gaps = 3/96 (3%)

Query: 72  IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
           +IHG+++  + ID  I   L + W FSR+  I  +ILR    EL+    +P  V I+E +
Sbjct: 39  LIHGMVENSEDIDDKIMG-LAKNWDFSRIAKIDLAILRLAAYELLFRKDIPPVVTINEAI 97

Query: 132 CIAHDFFYGDEPKFINAVLDKVSRKEEIKRSGCVSA 167
            ++ +F   +  +F+N +LDK+  K E+ R    ++
Sbjct: 98  DLSKEFSTAESRRFVNGILDKL--KGELDRPSRTAS 131


>gi|171463084|ref|YP_001797197.1| NusB antitermination factor [Polynucleobacter necessarius subsp.
           necessarius STIR1]
 gi|171192622|gb|ACB43583.1| NusB antitermination factor [Polynucleobacter necessarius subsp.
           necessarius STIR1]
          Length = 169

 Score = 52.8 bits (125), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 45/162 (27%), Positives = 73/162 (45%), Gaps = 29/162 (17%)

Query: 8   KDLKLSHRRGI-----ARLAAVQALYQIDII--------GCSTTEIISEYETYRFCADTE 54
           KD K S +R +     AR  A+Q +YQ  ++        G +  + +SE   +R C    
Sbjct: 15  KDAKPSPKRSLTPRRRAREYALQGVYQSLVMRRAGSIPNGAAIAKQLSEDPAFRRC---- 70

Query: 55  LDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLE 114
                      L+ F+ I  GV+ R   ++ +I+  L      + L  +  + L  G  E
Sbjct: 71  ----------QLDLFQSIFDGVLARTDELEAIITPALDR--PINELSPVEHAALLIGAYE 118

Query: 115 LIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRK 156
           L    SVP +V I+E V +A  F   D  K++N VLD +++K
Sbjct: 119 LAADLSVPYKVAINEAVELAKTFGGTDGHKYVNGVLDLLAQK 160


>gi|37527753|ref|NP_931098.1| transcription antitermination protein NusB [Photorhabdus
           luminescens subsp. laumondii TTO1]
 gi|39931724|sp|Q7N0J0|NUSB_PHOLL RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|36787189|emb|CAE16269.1| N utilization substance protein B [Photorhabdus luminescens subsp.
           laumondii TTO1]
          Length = 138

 Score = 52.8 bits (125), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 41/130 (31%), Positives = 64/130 (49%), Gaps = 13/130 (10%)

Query: 23  AVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQH 82
           AVQA+Y   + G S  ++       +F   +E DV  V    D+ +FR ++ GV      
Sbjct: 13  AVQAIYSWQLSGNSIADV-----ELQFL--SEQDVTGV----DVTYFRELLSGVAVNAAK 61

Query: 83  IDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDE 142
           +D L++  L+ +     L  +  +ILR  + EL     VP +V I+E + +A  F   D 
Sbjct: 62  LDALMAPYLSRQ--LEELGQVEKAILRIAMFELSYRDDVPYKVAINEAIELAKVFGAEDS 119

Query: 143 PKFINAVLDK 152
            KF+N VLDK
Sbjct: 120 HKFVNGVLDK 129


>gi|300858556|ref|YP_003783539.1| N utilization substance protein B-like protein [Corynebacterium
           pseudotuberculosis FRC41]
 gi|300686010|gb|ADK28932.1| N utilization substance protein B-like protein [Corynebacterium
           pseudotuberculosis FRC41]
 gi|302206268|gb|ADL10610.1| N utilization substance protein B (Protein nusB) [Corynebacterium
           pseudotuberculosis C231]
 gi|302330826|gb|ADL21020.1| N utilization substance protein B (Protein nusB) [Corynebacterium
           pseudotuberculosis 1002]
          Length = 208

 Score = 52.8 bits (125), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 38/144 (26%), Positives = 64/144 (44%), Gaps = 7/144 (4%)

Query: 19  ARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMD 78
           AR  A + LY+ ++       II +     +  D  L V  V  +      + I+ G   
Sbjct: 32  ARRRAAEVLYEAEVRDVDPVAIIEDRIALSYHQD--LGVAPVAAYT-----KEIVAGTAQ 84

Query: 79  RKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFF 138
               ID LI++ L E W   R+  +  ++LR  V ELI    VPV   + + V +   + 
Sbjct: 85  ELDRIDGLIAANLAENWELERISAVDRAVLRVAVWELIFNEDVPVATAVVDGVELVSQYS 144

Query: 139 YGDEPKFINAVLDKVSRKEEIKRS 162
               P ++NA+LD +++  E  R+
Sbjct: 145 TDVAPAYVNALLDSIAQNIESHRA 168


>gi|304316761|ref|YP_003851906.1| NusB antitermination factor [Thermoanaerobacterium
           thermosaccharolyticum DSM 571]
 gi|302778263|gb|ADL68822.1| NusB antitermination factor [Thermoanaerobacterium
           thermosaccharolyticum DSM 571]
          Length = 140

 Score = 52.8 bits (125), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 37/136 (27%), Positives = 61/136 (44%), Gaps = 13/136 (9%)

Query: 15  RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74
            R  AR   V+ LYQ D+      +I++     RF    + + E  Y+           +
Sbjct: 2   NRTQAREWLVKLLYQFDVSKSEPPDILN-----RFFESNDPEEEKDYIEK-------TFY 49

Query: 75  GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134
           G+++   +ID  I   L + W  +R+  I  +I+R    E++ C  +P  V I+E V IA
Sbjct: 50  GIVENVNNIDDRIKKYL-KNWDINRIAKIDLAIIRCSFYEILYCDDIPNSVSINEAVEIA 108

Query: 135 HDFFYGDEPKFINAVL 150
             +     P FIN +L
Sbjct: 109 KKYSTEKSPSFINGIL 124


>gi|319892510|ref|YP_004149385.1| Transcription termination protein NusB [Staphylococcus
           pseudintermedius HKU10-03]
 gi|317162206|gb|ADV05749.1| Transcription termination protein NusB [Staphylococcus
           pseudintermedius HKU10-03]
 gi|323464388|gb|ADX76541.1| transcription antitermination factor NusB [Staphylococcus
           pseudintermedius ED99]
          Length = 130

 Score = 52.8 bits (125), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 44/142 (30%), Positives = 67/142 (47%), Gaps = 15/142 (10%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           R  AR  A Q L+Q+++     T  I E  ++         ++  Y  +D ++ + ++ G
Sbjct: 3   RKQARSQAFQTLFQLEMKNTELT--IDEAISF---------IKEDYPDLDFDFIKWLVSG 51

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHS-VPVEVIISEYVCIA 134
           V D +  +D  IS  L   W+ +RL      ILR    E+   HS  P +VII+E V +A
Sbjct: 52  VKDHQHVLDETISPHLN-GWTIARLLKTDRIILRMATFEM--NHSDTPEKVIINEAVELA 108

Query: 135 HDFFYGDEPKFINAVLDKVSRK 156
             F   D  KFIN VL  + R 
Sbjct: 109 KQFSDDDHYKFINGVLSHIKRN 130


>gi|312869983|ref|ZP_07730122.1| transcription antitermination factor NusB [Lactobacillus oris
           PB013-T2-3]
 gi|311094568|gb|EFQ52873.1| transcription antitermination factor NusB [Lactobacillus oris
           PB013-T2-3]
          Length = 136

 Score = 52.8 bits (125), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 30/93 (32%), Positives = 45/93 (48%)

Query: 67  EWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVI 126
           E+ + +  GV DR+  +D  ISS L   W+  RL      ILR  + EL     VP  V 
Sbjct: 44  EYVQRLATGVSDRQAALDGQISSLLASDWTIDRLAKADLIILRLALYELQYVEEVPTPVA 103

Query: 127 ISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEI 159
           I+E + +A +F      KFIN  L +  ++  +
Sbjct: 104 INEALELAKEFSNDQSRKFINGALGRFEKENNL 136


>gi|327330421|gb|EGE72170.1| n utilization substance protein B-like protein [Propionibacterium
           acnes HL097PA1]
          Length = 261

 Score = 52.8 bits (125), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 31/138 (22%), Positives = 64/138 (46%), Gaps = 14/138 (10%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           R  AR  A+  L++ D+IG    E+++                 V+ +    +   ++ G
Sbjct: 39  RSKARKQALDILFEADLIGTDPLEVLAARP-------------GVFTNPVRPFAADLVRG 85

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
           V   +  +D +++ CL+E W+ +R+  +   + R G  E++   + P   +ISE + ++ 
Sbjct: 86  VAATQVGLDSVLTDCLSEGWTLARMPRVDRILARLGAFEILHTDT-PNPAVISEAIELSE 144

Query: 136 DFFYGDEPKFINAVLDKV 153
           +F   D   F+N +L  V
Sbjct: 145 EFSTDDSAPFLNGLLGAV 162


>gi|119390835|sp|Q1JF82|NUSB_STRPD RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
          Length = 150

 Score = 52.8 bits (125), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 42/154 (27%), Positives = 77/154 (50%), Gaps = 21/154 (13%)

Query: 2   TIQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYE-TYRFCADTELDVESV 60
           + Q++++DL         R  A QAL+ I++      E+++  +  Y +   T  D + +
Sbjct: 4   SFQNSRRDL---------RERAFQALFNIEM----GAELLAASQFAYGYDKVTREDAQVL 50

Query: 61  YLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHS 120
            L +   +   ++ GV + K+ +D LIS+ L + WS  RL +   ++LR G+ E+     
Sbjct: 51  ELPI---FLLSLVTGVNNHKEELDNLISTHLKKGWSLERLTLTDKTLLRLGLFEIKYFDE 107

Query: 121 VPVEVIISEYVCIAHDFFYGDE--PKFINAVLDK 152
            P  V ++E + +A    Y DE   KFIN +L +
Sbjct: 108 TPDRVALNEIIEVAKK--YSDETSAKFINGLLSQ 139


>gi|50842668|ref|YP_055895.1| putative NusB-family protein [Propionibacterium acnes KPA171202]
 gi|289425085|ref|ZP_06426862.1| transcription antitermination factor NusB [Propionibacterium acnes
           SK187]
 gi|289428561|ref|ZP_06430245.1| transcription antitermination factor NusB [Propionibacterium acnes
           J165]
 gi|295130747|ref|YP_003581410.1| transcription antitermination factor NusB [Propionibacterium acnes
           SK137]
 gi|81611678|sp|Q6A8H8|NUSB_PROAC RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|50840270|gb|AAT82937.1| putative NusB-family protein [Propionibacterium acnes KPA171202]
 gi|289154063|gb|EFD02751.1| transcription antitermination factor NusB [Propionibacterium acnes
           SK187]
 gi|289158255|gb|EFD06474.1| transcription antitermination factor NusB [Propionibacterium acnes
           J165]
 gi|291375576|gb|ADD99430.1| transcription antitermination factor NusB [Propionibacterium acnes
           SK137]
 gi|313764289|gb|EFS35653.1| transcription antitermination factor NusB [Propionibacterium acnes
           HL013PA1]
 gi|313771992|gb|EFS37958.1| transcription antitermination factor NusB [Propionibacterium acnes
           HL074PA1]
 gi|313791976|gb|EFS40077.1| transcription antitermination factor NusB [Propionibacterium acnes
           HL110PA1]
 gi|313802074|gb|EFS43308.1| transcription antitermination factor NusB [Propionibacterium acnes
           HL110PA2]
 gi|313807685|gb|EFS46172.1| transcription antitermination factor NusB [Propionibacterium acnes
           HL087PA2]
 gi|313810192|gb|EFS47913.1| transcription antitermination factor NusB [Propionibacterium acnes
           HL083PA1]
 gi|313812780|gb|EFS50494.1| transcription antitermination factor NusB [Propionibacterium acnes
           HL025PA1]
 gi|313816197|gb|EFS53911.1| transcription antitermination factor NusB [Propionibacterium acnes
           HL059PA1]
 gi|313818722|gb|EFS56436.1| transcription antitermination factor NusB [Propionibacterium acnes
           HL046PA2]
 gi|313820492|gb|EFS58206.1| transcription antitermination factor NusB [Propionibacterium acnes
           HL036PA1]
 gi|313822702|gb|EFS60416.1| transcription antitermination factor NusB [Propionibacterium acnes
           HL036PA2]
 gi|313825364|gb|EFS63078.1| transcription antitermination factor NusB [Propionibacterium acnes
           HL063PA1]
 gi|313827660|gb|EFS65374.1| transcription antitermination factor NusB [Propionibacterium acnes
           HL063PA2]
 gi|313830523|gb|EFS68237.1| transcription antitermination factor NusB [Propionibacterium acnes
           HL007PA1]
 gi|313833559|gb|EFS71273.1| transcription antitermination factor NusB [Propionibacterium acnes
           HL056PA1]
 gi|313838895|gb|EFS76609.1| transcription antitermination factor NusB [Propionibacterium acnes
           HL086PA1]
 gi|314915279|gb|EFS79110.1| transcription antitermination factor NusB [Propionibacterium acnes
           HL005PA4]
 gi|314918171|gb|EFS82002.1| transcription antitermination factor NusB [Propionibacterium acnes
           HL050PA1]
 gi|314920247|gb|EFS84078.1| transcription antitermination factor NusB [Propionibacterium acnes
           HL050PA3]
 gi|314925034|gb|EFS88865.1| transcription antitermination factor NusB [Propionibacterium acnes
           HL036PA3]
 gi|314931770|gb|EFS95601.1| transcription antitermination factor NusB [Propionibacterium acnes
           HL067PA1]
 gi|314955572|gb|EFS99973.1| transcription antitermination factor NusB [Propionibacterium acnes
           HL027PA1]
 gi|314958067|gb|EFT02170.1| transcription antitermination factor NusB [Propionibacterium acnes
           HL002PA1]
 gi|314960362|gb|EFT04464.1| transcription antitermination factor NusB [Propionibacterium acnes
           HL002PA2]
 gi|314962632|gb|EFT06732.1| transcription antitermination factor NusB [Propionibacterium acnes
           HL082PA1]
 gi|314967503|gb|EFT11602.1| transcription antitermination factor NusB [Propionibacterium acnes
           HL037PA1]
 gi|314973523|gb|EFT17619.1| transcription antitermination factor NusB [Propionibacterium acnes
           HL053PA1]
 gi|314976203|gb|EFT20298.1| transcription antitermination factor NusB [Propionibacterium acnes
           HL045PA1]
 gi|314978636|gb|EFT22730.1| transcription antitermination factor NusB [Propionibacterium acnes
           HL072PA2]
 gi|314983775|gb|EFT27867.1| transcription antitermination factor NusB [Propionibacterium acnes
           HL005PA1]
 gi|314987956|gb|EFT32047.1| transcription antitermination factor NusB [Propionibacterium acnes
           HL005PA2]
 gi|314989766|gb|EFT33857.1| transcription antitermination factor NusB [Propionibacterium acnes
           HL005PA3]
 gi|315077848|gb|EFT49899.1| transcription antitermination factor NusB [Propionibacterium acnes
           HL053PA2]
 gi|315080473|gb|EFT52449.1| transcription antitermination factor NusB [Propionibacterium acnes
           HL078PA1]
 gi|315084144|gb|EFT56120.1| transcription antitermination factor NusB [Propionibacterium acnes
           HL027PA2]
 gi|315085487|gb|EFT57463.1| transcription antitermination factor NusB [Propionibacterium acnes
           HL002PA3]
 gi|315088456|gb|EFT60432.1| transcription antitermination factor NusB [Propionibacterium acnes
           HL072PA1]
 gi|315096070|gb|EFT68046.1| transcription antitermination factor NusB [Propionibacterium acnes
           HL038PA1]
 gi|315098699|gb|EFT70675.1| transcription antitermination factor NusB [Propionibacterium acnes
           HL059PA2]
 gi|315101532|gb|EFT73508.1| transcription antitermination factor NusB [Propionibacterium acnes
           HL046PA1]
 gi|315105759|gb|EFT77735.1| transcription antitermination factor NusB [Propionibacterium acnes
           HL030PA1]
 gi|327326350|gb|EGE68140.1| n utilization substance protein B-like protein [Propionibacterium
           acnes HL096PA2]
 gi|327331775|gb|EGE73512.1| n utilization substance protein B-like protein [Propionibacterium
           acnes HL096PA3]
 gi|327443552|gb|EGE90206.1| transcription antitermination factor NusB [Propionibacterium acnes
           HL013PA2]
 gi|327445756|gb|EGE92410.1| transcription antitermination factor NusB [Propionibacterium acnes
           HL043PA2]
 gi|327448261|gb|EGE94915.1| transcription antitermination factor NusB [Propionibacterium acnes
           HL043PA1]
 gi|327450617|gb|EGE97271.1| transcription antitermination factor NusB [Propionibacterium acnes
           HL087PA3]
 gi|327453305|gb|EGE99959.1| transcription antitermination factor NusB [Propionibacterium acnes
           HL092PA1]
 gi|327454045|gb|EGF00700.1| transcription antitermination factor NusB [Propionibacterium acnes
           HL083PA2]
 gi|328753303|gb|EGF66919.1| transcription antitermination factor NusB [Propionibacterium acnes
           HL025PA2]
 gi|328754035|gb|EGF67651.1| transcription antitermination factor NusB [Propionibacterium acnes
           HL087PA1]
 gi|328754763|gb|EGF68379.1| transcription antitermination factor NusB [Propionibacterium acnes
           HL020PA1]
 gi|328760688|gb|EGF74254.1| n utilization substance protein B-like protein [Propionibacterium
           acnes HL099PA1]
 gi|332675591|gb|AEE72407.1| N utilization substance protein B [Propionibacterium acnes 266]
          Length = 261

 Score = 52.8 bits (125), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 31/138 (22%), Positives = 64/138 (46%), Gaps = 14/138 (10%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           R  AR  A+  L++ D+IG    E+++                 V+ +    +   ++ G
Sbjct: 39  RSKARKQALDILFEADLIGTDPLEVLAARP-------------GVFTNPVRPFAADLVRG 85

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
           V   +  +D +++ CL+E W+ +R+  +   + R G  E++   + P   +ISE + ++ 
Sbjct: 86  VAATQVGLDSVLTDCLSEGWTLARMPRVDRILARLGAFEILHTDT-PNPAVISEAIELSE 144

Query: 136 DFFYGDEPKFINAVLDKV 153
           +F   D   F+N +L  V
Sbjct: 145 EFSTDDSAPFLNGLLGAV 162


>gi|255284121|ref|ZP_05348676.1| transcription antitermination factor NusB [Bryantella formatexigens
           DSM 14469]
 gi|255265295|gb|EET58500.1| transcription antitermination factor NusB [Bryantella formatexigens
           DSM 14469]
          Length = 134

 Score = 52.8 bits (125), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 27/98 (27%), Positives = 51/98 (52%), Gaps = 1/98 (1%)

Query: 58  ESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIE 117
           E+     D E+     H + ++   +D  +++  ++ W   R++ +  +ILR    E++E
Sbjct: 38  EAAPTEKDAEYIFDKFHKIEEKLPQLDERLAAE-SQGWKLGRMNKVDLAILRLAAYEVLE 96

Query: 118 CHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSR 155
              +PV V I+E V +A  +   D P F+N VL K++R
Sbjct: 97  DDDIPVGVAINEAVELAKKYGGDDSPSFVNGVLGKIAR 134


>gi|303239904|ref|ZP_07326427.1| NusB antitermination factor [Acetivibrio cellulolyticus CD2]
 gi|302592614|gb|EFL62339.1| NusB antitermination factor [Acetivibrio cellulolyticus CD2]
          Length = 141

 Score = 52.8 bits (125), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 39/140 (27%), Positives = 68/140 (48%), Gaps = 12/140 (8%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           R  AR  A++ +YQ++I   S  E I +           L+ E+V  + D  +   ++ G
Sbjct: 3   RRAAREIAMKLVYQLEIQKDSREEQIRQT----------LEQENVTEN-DTNYITDVVEG 51

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
           V    + ID  I    ++ W  SR+  +  SILR  + E+   + +P  V ++E V +A 
Sbjct: 52  VFKNLEQIDKTIE-MYSKGWKLSRISKVDLSILRLSIYEISFRNDIPFNVSVNEAVELAK 110

Query: 136 DFFYGDEPKFINAVLDKVSR 155
           ++   +   FIN +L KVS+
Sbjct: 111 NYSGEESSSFINGILGKVSK 130


>gi|284991570|ref|YP_003410124.1| NusB antitermination factor [Geodermatophilus obscurus DSM 43160]
 gi|284064815|gb|ADB75753.1| NusB antitermination factor [Geodermatophilus obscurus DSM 43160]
          Length = 135

 Score = 52.8 bits (125), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 42/138 (30%), Positives = 58/138 (42%), Gaps = 14/138 (10%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           R  AR  AV  LY+ D+ G    E++ E       A   +   +V L          + G
Sbjct: 4   RSKARKRAVDVLYEADLRGSDPLELLRERVA---LASPPIPDHAVRL----------VEG 50

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
           V +    +D LI       WS  RL  +  +ILR  V EL+    VP  V+I E V +A 
Sbjct: 51  VAEHAARVDELIDRH-ARGWSIHRLPDVDRAILRMAVFELLWVDDVPDAVVIDEAVELAR 109

Query: 136 DFFYGDEPKFINAVLDKV 153
                D P ++N VL  V
Sbjct: 110 SLSTDDSPAYVNGVLGGV 127


>gi|302879544|ref|YP_003848108.1| NusB antitermination factor [Gallionella capsiferriformans ES-2]
 gi|302582333|gb|ADL56344.1| NusB antitermination factor [Gallionella capsiferriformans ES-2]
          Length = 157

 Score = 52.8 bits (125), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 40/143 (27%), Positives = 65/143 (45%), Gaps = 16/143 (11%)

Query: 14  HRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVII 73
           HR   AR  A+Q +YQ  + G   TEI           +  L  E      D   +  ++
Sbjct: 20  HR---ARELALQGVYQWRVSGSDATEI-----------EAHLQGEKNLGRYDKPMYSKLL 65

Query: 74  HGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCI 133
            GV+  ++ + +L++  L    +   L  +  S+L     EL     VP +V+I+E V +
Sbjct: 66  RGVLANQEELQILLTPYLDR--ALDELSTVEFSVLLLAGFELAHQLDVPYKVVINEAVEL 123

Query: 134 AHDFFYGDEPKFINAVLDKVSRK 156
           A  F   D  K++N VLDK++ K
Sbjct: 124 AKTFGGTDGHKYVNGVLDKLAPK 146


>gi|241894790|ref|ZP_04782086.1| transcription antitermination protein NusB [Weissella
           paramesenteroides ATCC 33313]
 gi|241872002|gb|EER75753.1| transcription antitermination protein NusB [Weissella
           paramesenteroides ATCC 33313]
          Length = 139

 Score = 52.8 bits (125), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 36/133 (27%), Positives = 66/133 (49%), Gaps = 8/133 (6%)

Query: 20  RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79
           R AA Q+L+ +     + T  +    T     D E+  E   +  DL     ++ GV+ +
Sbjct: 10  RQAAFQSLFGL---ALNPTADVDTTITQVLVGDPEIAWED-EIPADL---TSVVLGVVAK 62

Query: 80  KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139
           +  +DL+I+  L+  W+  RL+     ++R  + E  +   VP ++ ++E + +AHDF  
Sbjct: 63  QDELDLMITDHLSSDWTLDRLNTTDLVLMRLALYE-AKFTDVPAKIAVNEALQLAHDFTD 121

Query: 140 GDEPKFINAVLDK 152
               KFIN +L+K
Sbjct: 122 DKSRKFINGILNK 134


>gi|307129902|ref|YP_003881918.1| transcription antitermination protein [Dickeya dadantii 3937]
 gi|306527431|gb|ADM97361.1| transcription antitermination protein [Dickeya dadantii 3937]
          Length = 139

 Score = 52.8 bits (125), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 43/134 (32%), Positives = 64/134 (47%), Gaps = 17/134 (12%)

Query: 23  AVQALYQIDIIGCSTTEIISEYETYRFCADTELDV--ESVYLHVDLEWFRVIIHGVMDRK 80
           AVQALY   +   S  +I          AD EL    E     VD+ +FR ++ GV  + 
Sbjct: 13  AVQALYSWQL---SKNDI----------ADVELQFLSEQDVKGVDITYFRELLAGVATQA 59

Query: 81  QHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYG 140
           + +D  ++  L+ +     L  +  +ILR  V EL +   VP +V I+E + +A  F   
Sbjct: 60  EKLDAQMAPYLSRQ--LDELGQVERAILRLAVYELSKREDVPYKVAINEAIELAKVFGAE 117

Query: 141 DEPKFINAVLDKVS 154
           D  KF+N VLDK  
Sbjct: 118 DSHKFVNGVLDKAG 131


>gi|282853858|ref|ZP_06263195.1| transcription antitermination factor NusB [Propionibacterium acnes
           J139]
 gi|282583311|gb|EFB88691.1| transcription antitermination factor NusB [Propionibacterium acnes
           J139]
 gi|314923552|gb|EFS87383.1| transcription antitermination factor NusB [Propionibacterium acnes
           HL001PA1]
 gi|314966598|gb|EFT10697.1| transcription antitermination factor NusB [Propionibacterium acnes
           HL082PA2]
 gi|314981523|gb|EFT25617.1| transcription antitermination factor NusB [Propionibacterium acnes
           HL110PA3]
 gi|315092187|gb|EFT64163.1| transcription antitermination factor NusB [Propionibacterium acnes
           HL110PA4]
 gi|315092880|gb|EFT64856.1| transcription antitermination factor NusB [Propionibacterium acnes
           HL060PA1]
 gi|315103598|gb|EFT75574.1| transcription antitermination factor NusB [Propionibacterium acnes
           HL050PA2]
 gi|327327421|gb|EGE69197.1| n utilization substance protein B-like protein [Propionibacterium
           acnes HL103PA1]
          Length = 261

 Score = 52.8 bits (125), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 31/138 (22%), Positives = 64/138 (46%), Gaps = 14/138 (10%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           R  AR  A+  L++ D+IG    E+++                 V+ +    +   ++ G
Sbjct: 39  RSKARKQALDILFEADLIGTDPLEVLAARP-------------GVFTNPVRPFAADLVRG 85

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
           V   +  +D +++ CL+E W+ +R+  +   + R G  E++   + P   +ISE + ++ 
Sbjct: 86  VTATQVGLDSVLTDCLSEGWTLARMPRVDRILARLGAFEILHTDT-PNPAVISEAIELSE 144

Query: 136 DFFYGDEPKFINAVLDKV 153
           +F   D   F+N +L  V
Sbjct: 145 EFSTDDSAPFLNGLLGAV 162


>gi|222526903|ref|YP_002571374.1| NusB antitermination factor [Chloroflexus sp. Y-400-fl]
 gi|254772624|sp|B9LDT2|NUSB_CHLSY RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|222450782|gb|ACM55048.1| NusB antitermination factor [Chloroflexus sp. Y-400-fl]
          Length = 151

 Score = 52.8 bits (125), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 33/145 (22%), Positives = 71/145 (48%), Gaps = 14/145 (9%)

Query: 11  KLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFR 70
           +L+ +R   R+AA+Q L+++D    +  +++      R   D  +  ES       E+ R
Sbjct: 5   RLASQRHRVRIAALQILFEVDETDHAIDQVLE-----RRLTDEPMSQESA------EFLR 53

Query: 71  VIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELI--ECHSVPVEVIIS 128
            ++ G  + + ++D +I       W  +++  +  ++LR  + EL+  +    P++ +I+
Sbjct: 54  RLVFGAWEHRSYLDRIIEEA-APNWPVAQMPGVDKAVLRIALFELLIDDVERTPIKAVIN 112

Query: 129 EYVCIAHDFFYGDEPKFINAVLDKV 153
           E V +A  F   +  +F+N VL  V
Sbjct: 113 EAVELAKQFGSDNSSRFVNGVLGTV 137


>gi|160934296|ref|ZP_02081683.1| hypothetical protein CLOLEP_03167 [Clostridium leptum DSM 753]
 gi|156866969|gb|EDO60341.1| hypothetical protein CLOLEP_03167 [Clostridium leptum DSM 753]
          Length = 134

 Score = 52.8 bits (125), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 35/110 (31%), Positives = 57/110 (51%), Gaps = 6/110 (5%)

Query: 51  ADTELDVESVYLHVDLE---WFRVIIHGVMDRKQHIDLLISS-CLTEKWSFSRLDMILCS 106
           A  E  VES  L  D+    + + + HGV    + ID +I   C+   W+ +RL  +  S
Sbjct: 22  ASLEELVESAQLARDITICGFAQNVFHGVEKHGEEIDGMIEKHCIG--WTKNRLSRVAVS 79

Query: 107 ILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRK 156
           +LR  V E++    +PV V I+E V IA  +   ++  F+N VL  V+++
Sbjct: 80  VLRTAVYEMLYEEKIPVSVSINEAVEIAKTYGSTEDASFVNGVLGSVAKE 129


>gi|94991121|ref|YP_599221.1| transcription antitermination protein NusB [Streptococcus pyogenes
           MGAS10270]
 gi|94544629|gb|ABF34677.1| N utilization substance protein B [Streptococcus pyogenes
           MGAS10270]
          Length = 156

 Score = 52.8 bits (125), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 42/154 (27%), Positives = 77/154 (50%), Gaps = 21/154 (13%)

Query: 2   TIQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYE-TYRFCADTELDVESV 60
           + Q++++DL         R  A QAL+ I++      E+++  +  Y +   T  D + +
Sbjct: 10  SFQNSRRDL---------RERAFQALFNIEM----GAELLAASQFAYGYDKVTREDAQVL 56

Query: 61  YLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHS 120
            L +   +   ++ GV + K+ +D LIS+ L + WS  RL +   ++LR G+ E+     
Sbjct: 57  ELPI---FLLSLVTGVNNHKEELDNLISTHLKKGWSLERLTLTDKTLLRLGLFEIKYFDE 113

Query: 121 VPVEVIISEYVCIAHDFFYGDE--PKFINAVLDK 152
            P  V ++E + +A    Y DE   KFIN +L +
Sbjct: 114 TPDRVALNEIIEVAKK--YSDETSAKFINGLLSQ 145


>gi|163848950|ref|YP_001636994.1| transcription antitermination factor NusB [Chloroflexus aurantiacus
           J-10-fl]
 gi|163670239|gb|ABY36605.1| transcription antitermination factor NusB [Chloroflexus aurantiacus
           J-10-fl]
          Length = 153

 Score = 52.8 bits (125), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 33/145 (22%), Positives = 71/145 (48%), Gaps = 14/145 (9%)

Query: 11  KLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFR 70
           +L+ +R   R+AA+Q L+++D    +  +++      R   D  +  ES       E+ R
Sbjct: 7   RLASQRHRVRIAALQILFEVDETDHAIDQVLE-----RRLTDEPMSQESA------EFLR 55

Query: 71  VIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELI--ECHSVPVEVIIS 128
            ++ G  + + ++D +I       W  +++  +  ++LR  + EL+  +    P++ +I+
Sbjct: 56  RLVFGAWEHRSYLDRIIEEA-APNWPVAQMPGVDKAVLRIALFELLIDDVERTPIKAVIN 114

Query: 129 EYVCIAHDFFYGDEPKFINAVLDKV 153
           E V +A  F   +  +F+N VL  V
Sbjct: 115 EAVELAKQFGSDNSSRFVNGVLGTV 139


>gi|322515009|ref|ZP_08068019.1| transcription antitermination factor NusB [Actinobacillus ureae
           ATCC 25976]
 gi|322118998|gb|EFX91170.1| transcription antitermination factor NusB [Actinobacillus ureae
           ATCC 25976]
          Length = 163

 Score = 52.4 bits (124), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 47/145 (32%), Positives = 71/145 (48%), Gaps = 14/145 (9%)

Query: 10  LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF 69
           +K+S RR  AR  AVQALY   +   S  E+        F  D +++       VDL +F
Sbjct: 27  MKVSPRRR-ARECAVQALYSWYVSQNSVEEV-----ELSFVTDQDMN------GVDLPYF 74

Query: 70  RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISE 129
           R ++   +   + ID  +   L    +   +D I  +ILR    EL     VP +V+I+E
Sbjct: 75  RKLLRSTVLYIEAIDGALRPFLDR--AEDEVDPIERTILRLSAYELKYELDVPYKVVINE 132

Query: 130 YVCIAHDFFYGDEPKFINAVLDKVS 154
            + +A  F  GD  K+IN VLDK++
Sbjct: 133 GIEVAKVFGSGDSHKYINGVLDKLA 157


>gi|296125572|ref|YP_003632824.1| NusB antitermination factor [Brachyspira murdochii DSM 12563]
 gi|296017388|gb|ADG70625.1| NusB antitermination factor [Brachyspira murdochii DSM 12563]
          Length = 154

 Score = 52.4 bits (124), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 46/156 (29%), Positives = 72/156 (46%), Gaps = 13/156 (8%)

Query: 4   QDNKKDLKLS--HRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVY 61
           ++N KDL LS    R  AR+ AV +LY  +I        IS      F  D ++  E+++
Sbjct: 8   KENIKDLDLSAYGARRQARIYAVMSLYSYEI----NERKISINNILDFDYDKKI-PENIF 62

Query: 62  LHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSV 121
                   R ++ G +   + ID LI    +  W   R+  +  SI+R  +  LI    +
Sbjct: 63  AFT-----RNLVEGTIKNLERIDSLIEKY-SNNWDIKRIQYVDKSIIRMSIYSLIFLKDI 116

Query: 122 PVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKE 157
           P  V+I E V IA  F   D  KF+N +LD +  ++
Sbjct: 117 PKSVVIDEAVEIAKIFSDKDSYKFVNGILDGIQEED 152


>gi|71911358|ref|YP_282908.1| transcription antitermination protein NusB [Streptococcus pyogenes
           MGAS5005]
 gi|71854140|gb|AAZ52163.1| N utilization substance protein B [Streptococcus pyogenes MGAS5005]
          Length = 150

 Score = 52.4 bits (124), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 42/154 (27%), Positives = 77/154 (50%), Gaps = 21/154 (13%)

Query: 2   TIQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYE-TYRFCADTELDVESV 60
           + Q++++DL         R  A QAL+ I++      E+++  +  Y +   T  D + +
Sbjct: 4   SFQNSRRDL---------RERAFQALFNIEM----GAELLAASQFAYGYDKVTGEDAQVL 50

Query: 61  YLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHS 120
            L +   +   ++ GV + K+ +D LIS+ L + WS  RL +   ++LR G+ E+     
Sbjct: 51  ELPI---FLLSLVTGVNNHKEELDNLISTHLKKGWSLERLTLTDKTLLRLGLFEIKYFDE 107

Query: 121 VPVEVIISEYVCIAHDFFYGDE--PKFINAVLDK 152
            P  V ++E + +A    Y DE   KFIN +L +
Sbjct: 108 TPDRVALNEIIEVAKK--YSDETSAKFINGLLSQ 139


>gi|302389868|ref|YP_003825689.1| NusB antitermination factor [Thermosediminibacter oceani DSM 16646]
 gi|302200496|gb|ADL08066.1| NusB antitermination factor [Thermosediminibacter oceani DSM 16646]
          Length = 154

 Score = 52.4 bits (124), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 31/88 (35%), Positives = 51/88 (57%), Gaps = 5/88 (5%)

Query: 73  IHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVC 132
           ++GV+++K+ ID +I     + W   RL++   +I+R  + E+     +P+ V I+E V 
Sbjct: 62  VNGVLEKKECIDEIIDEYCVD-WELERLNIADRNIMRLAIYEIFFSDDIPLSVSINEAVE 120

Query: 133 IAHDFFYGDE--PKFINAVLDKVSRKEE 158
           IA    YGDE  PKF+N VL  ++R  E
Sbjct: 121 IAKK--YGDEKSPKFVNGVLGAIARDRE 146


>gi|320352895|ref|YP_004194234.1| NusB antitermination factor [Desulfobulbus propionicus DSM 2032]
 gi|320121397|gb|ADW16943.1| NusB antitermination factor [Desulfobulbus propionicus DSM 2032]
          Length = 140

 Score = 52.4 bits (124), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 27/88 (30%), Positives = 48/88 (54%), Gaps = 1/88 (1%)

Query: 66  LEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEV 125
           L + R +I G+   ++ ID L+++  +  W   R+ ++  +ILR  V E+  C   P +V
Sbjct: 48  LPYGRELILGICRHREEIDALLATH-SHNWRVERMSLVDRNILRIAVFEMRHCDQAPAQV 106

Query: 126 IISEYVCIAHDFFYGDEPKFINAVLDKV 153
            I+E + IA  +  G+   FIN +LD +
Sbjct: 107 AINEALEIAKRYSIGESVSFINGILDAI 134


>gi|313673615|ref|YP_004051726.1| nusb antitermination factor [Calditerrivibrio nitroreducens DSM
           19672]
 gi|312940371|gb|ADR19563.1| NusB antitermination factor [Calditerrivibrio nitroreducens DSM
           19672]
          Length = 141

 Score = 52.4 bits (124), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 26/84 (30%), Positives = 48/84 (57%), Gaps = 2/84 (2%)

Query: 72  IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
           ++   +++   +D LIS  L + W  +RL M+   ILR  + EL E +  P++V I +YV
Sbjct: 51  LLKKAIEKTVFLDELISKYLKQGWDLNRLPMVDLLILRLAIFELFESND-PIKV-IDDYV 108

Query: 132 CIAHDFFYGDEPKFINAVLDKVSR 155
            +A+ +   + P +IN +L+K+  
Sbjct: 109 TLANKYSEQNSPGYINGILEKIKN 132


>gi|228987373|ref|ZP_04147493.1| N utilization substance protein B [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
 gi|229140916|ref|ZP_04269460.1| N utilization substance protein B [Bacillus cereus BDRD-ST26]
 gi|229157781|ref|ZP_04285856.1| N utilization substance protein B [Bacillus cereus ATCC 4342]
 gi|229186425|ref|ZP_04313589.1| N utilization substance protein B [Bacillus cereus BGSC 6E1]
 gi|229198309|ref|ZP_04325016.1| N utilization substance protein B [Bacillus cereus m1293]
 gi|228585188|gb|EEK43299.1| N utilization substance protein B [Bacillus cereus m1293]
 gi|228597052|gb|EEK54708.1| N utilization substance protein B [Bacillus cereus BGSC 6E1]
 gi|228625738|gb|EEK82490.1| N utilization substance protein B [Bacillus cereus ATCC 4342]
 gi|228642492|gb|EEK98779.1| N utilization substance protein B [Bacillus cereus BDRD-ST26]
 gi|228772345|gb|EEM20791.1| N utilization substance protein B [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
          Length = 120

 Score = 52.4 bits (124), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 43/132 (32%), Positives = 63/132 (47%), Gaps = 18/132 (13%)

Query: 24  VQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHI 83
           +QALYQ+DI G        E E      +T  + E        E+   ++ G ++ K+ I
Sbjct: 1   MQALYQMDITG--------ELEPKVAVENTLDEGEETN-----EFLESLVVGFVENKEVI 47

Query: 84  DLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEP 143
           D  I   L +KW   R+ ++  SILR  V E+     +P  V I+E + IA  F  GDE 
Sbjct: 48  DEAIRQNL-KKWKLERISIVDRSILRVAVYEMKYMEEIPHNVTINEAIEIAKTF--GDEE 104

Query: 144 --KFINAVLDKV 153
             +FIN VL  +
Sbjct: 105 SRRFINGVLSNI 116


>gi|311108723|ref|YP_003981576.1| transcription antitermination factor NusB [Achromobacter
           xylosoxidans A8]
 gi|310763412|gb|ADP18861.1| transcription antitermination factor NusB [Achromobacter
           xylosoxidans A8]
          Length = 164

 Score = 52.4 bits (124), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 42/145 (28%), Positives = 65/145 (44%), Gaps = 20/145 (13%)

Query: 24  VQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR---- 79
           +Q +Y   + G   T+   E + +    DTE      +   D +WF+ ++HGV+      
Sbjct: 32  LQGVYAWLLRGGEGTQDAGEIDAH--LRDTE-----DFSEADAQWFKTLLHGVLREAPAL 84

Query: 80  KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139
           +Q     +   L E      L  +   IL  G  ELI    VP +V I+E V +A  F  
Sbjct: 85  RQRFTPYVDRPLAE------LSPVEHGILLIGSFELIHHVEVPYKVAINEAVELAKSFGG 138

Query: 140 GDEPKFINAVLDKVS---RKEEIKR 161
            D  KF+N VLDK++   R  E+ +
Sbjct: 139 TDGFKFVNGVLDKLAADVRANEVNK 163


>gi|302380357|ref|ZP_07268827.1| transcription antitermination factor NusB [Finegoldia magna
           ACS-171-V-Col3]
 gi|302311847|gb|EFK93858.1| transcription antitermination factor NusB [Finegoldia magna
           ACS-171-V-Col3]
          Length = 137

 Score = 52.4 bits (124), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 38/145 (26%), Positives = 75/145 (51%), Gaps = 16/145 (11%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           R  +R +A+Q +Y++++      + I E     FC    ++        D+E+F+ I+  
Sbjct: 3   RRQSRKSAMQLIYEMNMNEDYDKQRIEE-----FCKYQNIN------KNDIEFFKEIVLN 51

Query: 76  VMDRKQHIDLLIS--SCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCI 133
            +   +HID +++     T++W+  R++ +  SIL+ GV E++   S P  V I+E V +
Sbjct: 52  FI---EHIDDIVNIIENNTKQWNLDRINKLDLSILQVGVCEILYVESTPDSVAINEAVEL 108

Query: 134 AHDFFYGDEPKFINAVLDKVSRKEE 158
           A ++       FIN +L  V +++E
Sbjct: 109 AKEYSTEKSYSFINGILGSVLKRKE 133


>gi|210615789|ref|ZP_03290770.1| hypothetical protein CLONEX_02988 [Clostridium nexile DSM 1787]
 gi|210150125|gb|EEA81134.1| hypothetical protein CLONEX_02988 [Clostridium nexile DSM 1787]
          Length = 132

 Score = 52.4 bits (124), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 28/80 (35%), Positives = 45/80 (56%), Gaps = 1/80 (1%)

Query: 75  GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134
            V+D+K+ ID L++   T  W  SR++ +  +ILR  V E+     VP  V I+E V +A
Sbjct: 53  AVVDKKEEIDGLLNEYTT-GWKTSRMNRVDLTILRLAVYEMKWDEEVPTGVAINEAVELA 111

Query: 135 HDFFYGDEPKFINAVLDKVS 154
             +   + P F+N VL K++
Sbjct: 112 KKYSSDEGPSFVNGVLAKLA 131


>gi|304413734|ref|ZP_07395178.1| transcription termination factor [Candidatus Regiella insecticola
           LSR1]
 gi|304283825|gb|EFL92219.1| transcription termination factor [Candidatus Regiella insecticola
           LSR1]
          Length = 182

 Score = 52.4 bits (124), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 35/125 (28%), Positives = 64/125 (51%), Gaps = 12/125 (9%)

Query: 56  DVESVYL------HVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILR 109
           D++S +L       VD+ +F  ++ GV      +D L++  L+ +     L  I  +ILR
Sbjct: 29  DIQSYFLSEQDMKEVDINYFGQLLSGVAVDTATLDRLMAPYLSRQ--IEDLGQIEKAILR 86

Query: 110 AGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVS----RKEEIKRSGCV 165
             V EL +   +P +V+I+E + +A  F   D  KF+N VLDK++    +++++  S  +
Sbjct: 87  LAVFELSQRDDIPYKVVINEAIELAKIFGAEDSHKFVNGVLDKIAPIIRKRKQLNTSQVI 146

Query: 166 SAITQ 170
               Q
Sbjct: 147 PTTLQ 151


>gi|163790200|ref|ZP_02184633.1| transcription antitermination protein NusB [Carnobacterium sp. AT7]
 gi|159874475|gb|EDP68546.1| transcription antitermination protein NusB [Carnobacterium sp. AT7]
          Length = 147

 Score = 52.4 bits (124), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 42/140 (30%), Positives = 70/140 (50%), Gaps = 14/140 (10%)

Query: 15  RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELD----VESVYLHVDLEWFR 70
           RR I R  A+Q+L+Q+     S  E +S+ E  +    +E D    VE+V +     +  
Sbjct: 5   RRDI-REKALQSLFQL-----SVNEDLSKEEAMQHALISENDLIDEVETVLVP---SYLD 55

Query: 71  VIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEY 130
           +++ GVM+++  ID  I + L E WS +RL      I+R  + E++    VP  V ++E 
Sbjct: 56  MLVSGVMEKQDEIDEKIKTHL-ENWSLNRLAKTDLIIIRVAIFEMMYVSDVPDRVALNEA 114

Query: 131 VCIAHDFFYGDEPKFINAVL 150
           + I   +      KF+N VL
Sbjct: 115 LEITKKYSDEKSRKFVNGVL 134


>gi|119390836|sp|Q1J532|NUSB_STRPF RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
          Length = 150

 Score = 52.4 bits (124), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 42/154 (27%), Positives = 77/154 (50%), Gaps = 21/154 (13%)

Query: 2   TIQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYE-TYRFCADTELDVESV 60
           + Q++++DL         R  A QAL+ I++      E+++  +  Y +   T  D + +
Sbjct: 4   SFQNSRRDL---------RERAFQALFNIEM----GAELLAASQFAYGYDKVTGEDAQVL 50

Query: 61  YLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHS 120
            L +   +   ++ GV + K+ +D LIS+ L + WS  RL +   ++LR G+ E+     
Sbjct: 51  ELPI---FLLSLVMGVNNHKEELDNLISTHLKKGWSLERLTLTDKTLLRLGLFEIKYFDE 107

Query: 121 VPVEVIISEYVCIAHDFFYGDE--PKFINAVLDK 152
            P  V ++E + +A    Y DE   KFIN +L +
Sbjct: 108 TPDRVALNEIIEVAKK--YSDETSAKFINGLLSQ 139


>gi|301330723|ref|ZP_07223325.1| transcription antitermination factor NusB [Escherichia coli MS
           78-1]
 gi|300843384|gb|EFK71144.1| transcription antitermination factor NusB [Escherichia coli MS
           78-1]
          Length = 139

 Score = 52.4 bits (124), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 41/132 (31%), Positives = 64/132 (48%), Gaps = 13/132 (9%)

Query: 23  AVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQH 82
           AVQALY   +      ++      Y+F A  E DV+ V    D+ +FR ++ GV      
Sbjct: 13  AVQALYSWQLSQNDIADV-----EYQFLA--EQDVKDV----DVLYFRELLAGVATNTAS 61

Query: 83  IDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDE 142
           +D L+   L+       L  +  ++LR  + EL +   VP +V I+E + +A  F   D 
Sbjct: 62  LDGLMKPYLSR--LLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDS 119

Query: 143 PKFINAVLDKVS 154
            KF+N VLDK +
Sbjct: 120 HKFVNGVLDKAA 131


>gi|19746754|ref|NP_607890.1| transcription antitermination protein NusB [Streptococcus pyogenes
           MGAS8232]
 gi|21911108|ref|NP_665376.1| transcription antitermination protein NusB [Streptococcus pyogenes
           MGAS315]
 gi|139473181|ref|YP_001127896.1| transcription antitermination protein NusB [Streptococcus pyogenes
           str. Manfredo]
 gi|54037927|sp|P65585|NUSB_STRP8 RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|54041677|sp|P65584|NUSB_STRP3 RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|119390833|sp|Q1JA39|NUSB_STRPB RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|119390834|sp|Q1JK87|NUSB_STRPC RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|119390837|sp|Q48RL8|NUSB_STRPM RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|166215723|sp|A2RCS4|NUSB_STRPG RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|19748985|gb|AAL98389.1| putative transcriptional terminator [Streptococcus pyogenes
           MGAS8232]
 gi|21905318|gb|AAM80179.1| putative transcriptional terminator [Streptococcus pyogenes
           MGAS315]
 gi|134271427|emb|CAM29647.1| N utilization substance protein B homolog (NusB protein)
           [Streptococcus pyogenes str. Manfredo]
          Length = 150

 Score = 52.4 bits (124), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 42/154 (27%), Positives = 77/154 (50%), Gaps = 21/154 (13%)

Query: 2   TIQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYE-TYRFCADTELDVESV 60
           + Q++++DL         R  A QAL+ I++      E+++  +  Y +   T  D + +
Sbjct: 4   SFQNSRRDL---------RERAFQALFNIEM----GAELLAASQFAYGYDKVTGEDAQVL 50

Query: 61  YLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHS 120
            L +   +   ++ GV + K+ +D LIS+ L + WS  RL +   ++LR G+ E+     
Sbjct: 51  ELPI---FLLSLVTGVNNHKEELDNLISTHLKKGWSLERLTLTDKTLLRLGLFEIKYFDE 107

Query: 121 VPVEVIISEYVCIAHDFFYGDE--PKFINAVLDK 152
            P  V ++E + +A    Y DE   KFIN +L +
Sbjct: 108 TPDRVALNEIIEVAKK--YSDETSAKFINGLLSQ 139


>gi|325578284|ref|ZP_08148419.1| transcription termination/antitermination factor NusB [Haemophilus
           parainfluenzae ATCC 33392]
 gi|325160020|gb|EGC72149.1| transcription termination/antitermination factor NusB [Haemophilus
           parainfluenzae ATCC 33392]
          Length = 145

 Score = 52.4 bits (124), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 46/152 (30%), Positives = 69/152 (45%), Gaps = 13/152 (8%)

Query: 3   IQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYL 62
           + D K+ +K    R  AR  AVQALY   + G +  ++        F  D +L       
Sbjct: 1   MTDKKEPVKKVSPRRRARECAVQALYSWALSGNAPEQV-----ELTFVVDQDLK------ 49

Query: 63  HVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVP 122
            VD  +F  +    +   + +D  +S  L    +   LD I  +ILR  V EL     VP
Sbjct: 50  GVDKPYFSRLFRQTVANVEAVDFSMSHYLDR--ALDELDPIERAILRLAVYELQFEPDVP 107

Query: 123 VEVIISEYVCIAHDFFYGDEPKFINAVLDKVS 154
            +V I+E + +A  F   +  K+IN VLDKV+
Sbjct: 108 YKVAINEAIEVAKVFGADESHKYINGVLDKVA 139


>gi|331002443|ref|ZP_08325961.1| transcription antitermination factor NusB [Lachnospiraceae oral
           taxon 107 str. F0167]
 gi|330410259|gb|EGG89693.1| transcription antitermination factor NusB [Lachnospiraceae oral
           taxon 107 str. F0167]
          Length = 146

 Score = 52.4 bits (124), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 34/106 (32%), Positives = 56/106 (52%), Gaps = 1/106 (0%)

Query: 52  DTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAG 111
           D EL  ++ +   D+E+ +     VMD K  ID +IS  L++ W   R+  +  +ILR  
Sbjct: 42  DDELIHDANFSDGDIEYIKSKAMLVMDNKSEIDKIISE-LSQGWKLERIGRVERNILRLA 100

Query: 112 VLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKE 157
           + E+     +PV V I+E V +A  +   +   F+NA+L KV  +E
Sbjct: 101 IAEMKYDDDIPVSVAINEAVELAKAYGRDESYSFVNAILSKVGIEE 146


>gi|294055107|ref|YP_003548765.1| NusB antitermination factor [Coraliomargarita akajimensis DSM
           45221]
 gi|293614440|gb|ADE54595.1| NusB antitermination factor [Coraliomargarita akajimensis DSM
           45221]
          Length = 153

 Score = 52.4 bits (124), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 33/91 (36%), Positives = 49/91 (53%), Gaps = 3/91 (3%)

Query: 72  IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
           +IHG +D    ID  I S     W+F R+  I  SILR  + EL+    +P  V I+E +
Sbjct: 60  LIHGALDNIAKIDDEIMSH-ANNWTFDRIAKIDLSILRLAIYELLYRTDIPPIVSINEAI 118

Query: 132 CIAHDFFYGDEPKFINAVLDKVSRKEEIKRS 162
            ++  F   D  +FIN +LDK+  K++I R 
Sbjct: 119 DLSKVFSNPDSKRFINGILDKM--KDKINRP 147


>gi|147677514|ref|YP_001211729.1| transcription termination factor [Pelotomaculum thermopropionicum
           SI]
 gi|189035895|sp|A5D319|NUSB_PELTS RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|146273611|dbj|BAF59360.1| transcription termination factor [Pelotomaculum thermopropionicum
           SI]
          Length = 144

 Score = 52.4 bits (124), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 35/147 (23%), Positives = 72/147 (48%), Gaps = 14/147 (9%)

Query: 12  LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71
           +S R+  AR  A+Q L+Q+D+ G    E       +R      +D     L    E+ R+
Sbjct: 1   MSRRQ--ARERALQILFQVDVGGADPGE------AFRL-----MDEGFGELKKYQEFARL 47

Query: 72  IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
           ++ G ++    ID +I+  +++ W+ +R+  +  +I+R  + E+  C  +P  V ++E V
Sbjct: 48  LVGGTLENLAAIDRVIAG-VSKDWNINRMANVDRNIIRMALYEIFFCEDIPYSVSVNEAV 106

Query: 132 CIAHDFFYGDEPKFINAVLDKVSRKEE 158
            +   +   +  +FIN +L ++    E
Sbjct: 107 ELGKTYGGEESGRFINGILGRIVESPE 133


>gi|299822999|ref|ZP_07054885.1| transcription antitermination factor NusB [Listeria grayi DSM
           20601]
 gi|299816528|gb|EFI83766.1| transcription antitermination factor NusB [Listeria grayi DSM
           20601]
          Length = 130

 Score = 52.4 bits (124), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 41/138 (29%), Positives = 65/138 (47%), Gaps = 21/138 (15%)

Query: 15  RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74
           +R  AR  A+QAL+Q+++   S  + +S                +V      ++ + ++ 
Sbjct: 2   KRREAREVALQALFQMELNEMSFEQAVS----------------NVMPEEQDDYVKKLVS 45

Query: 75  GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134
           GV   K  ID  I + L + W   RL+ +  SILR  V E+  C  +P  V ++E + I+
Sbjct: 46  GVDTHKADIDTAIEAHL-DNWRKDRLNKVDLSILRLSVFEMKYCEDIPDRVSLNEAIEIS 104

Query: 135 HDFFYGDEP--KFINAVL 150
               Y DE   KFIN VL
Sbjct: 105 K--VYSDEKSSKFINGVL 120


>gi|210134202|ref|YP_002300641.1| transcription antitermination protein NusB [Helicobacter pylori
           P12]
 gi|238055353|sp|B6JPA0|NUSB_HELP2 RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|210132170|gb|ACJ07161.1| N utilization substance protein B [Helicobacter pylori P12]
          Length = 138

 Score = 52.4 bits (124), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 42/141 (29%), Positives = 68/141 (48%), Gaps = 13/141 (9%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           R  AR A V+ LY  +          S  E  +  A + L+ + +  +  L +   + +G
Sbjct: 4   RTQARGAVVELLYAFE----------SGNEEIKKIASSMLEEKKIK-NNQLAFALSLFNG 52

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
           V++R   ID LI   L + W F RL  +  +ILR G  E I        +II+E + +  
Sbjct: 53  VLERINEIDALIEPHLKD-WDFKRLGSMEKAILRLGAYE-IGFTPTQNPIIINECIELGK 110

Query: 136 DFFYGDEPKFINAVLDKVSRK 156
            +   + PKF+NA+LD +S+K
Sbjct: 111 LYAEPNTPKFLNAILDSLSKK 131


>gi|302561734|ref|ZP_07314076.1| transcription antitermination factor NusB [Streptomyces
           griseoflavus Tu4000]
 gi|302479352|gb|EFL42445.1| transcription antitermination factor NusB [Streptomyces
           griseoflavus Tu4000]
          Length = 143

 Score = 52.4 bits (124), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 37/147 (25%), Positives = 66/147 (44%), Gaps = 12/147 (8%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           R  AR  A Q +++ D  G     +++++  +      +  V    +         ++ G
Sbjct: 4   RNTARKRAFQIIFEGDQRGAEVLTVLADWIRHARSDTRQPPVSEYTMQ--------LVEG 55

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
             +  + ID LI    +  W+  R+ ++  SILR G  ELI     P  V++ E V +A 
Sbjct: 56  YAEHAKRIDELIGQY-SVGWTLDRMPVVDRSILRLGAYELIWVDETPDAVVLDEMVQLAK 114

Query: 136 DFFYGDEPKFINAVLDKVSRKEEIKRS 162
           +F   + P F+N +L    R +E+K S
Sbjct: 115 EFSTDESPSFVNGLL---GRLKELKPS 138


>gi|324992055|gb|EGC23977.1| N utilization substance protein B [Streptococcus sanguinis SK405]
 gi|324994148|gb|EGC26062.1| N utilization substance protein B [Streptococcus sanguinis SK678]
 gi|327459357|gb|EGF05703.1| N utilization substance protein B [Streptococcus sanguinis SK1]
 gi|327490573|gb|EGF22354.1| N utilization substance protein B [Streptococcus sanguinis SK1058]
          Length = 143

 Score = 52.4 bits (124), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 44/150 (29%), Positives = 72/150 (48%), Gaps = 19/150 (12%)

Query: 9   DLKLSHRRGIARLAAVQAL----YQIDII-GCSTTEIISEYETYRFCADTELDVESVYLH 63
           D+ L  RRG+ R  A QAL    Y+ D++  C           Y +  D E D  +    
Sbjct: 3   DILLESRRGL-RQRAFQALMSLEYEGDLVEACRFA--------YSYDKDEEADKAA---E 50

Query: 64  VDLEWFRV-IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVP 122
            D+  F + ++ GV+  K  +D  I+  L + W+  RL ++  +ILR G+ E+ E  + P
Sbjct: 51  ADIPAFLLNLVSGVVQSKDDLDKKIAQHLKKGWTVDRLTLVEKNILRLGIFEITEFDT-P 109

Query: 123 VEVIISEYVCIAHDFFYGDEPKFINAVLDK 152
             V ++E + ++  F      KFIN +L K
Sbjct: 110 QLVAVNEAIELSKQFSDEKSSKFINGILSK 139


>gi|187477080|ref|YP_785104.1| transcription antitermination protein NusB [Bordetella avium 197N]
 gi|115421666|emb|CAJ48176.1| N utilization substance protein B [Bordetella avium 197N]
          Length = 156

 Score = 52.4 bits (124), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 39/136 (28%), Positives = 62/136 (45%), Gaps = 17/136 (12%)

Query: 23  AVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR--- 79
           A+Q +Y   + G   T+   E + +   A+        +   D +WF+ ++HGV+     
Sbjct: 18  ALQGVYAWLLRGGQDTQDAGEIDAHLRDAED-------FSEADAQWFKTLLHGVLREAPT 70

Query: 80  -KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFF 138
            ++H    I   L E      L  +   IL  G  EL+    VP +V I+E V +A  F 
Sbjct: 71  LREHFTPYIDRPLAE------LSPVEHGILLIGSYELVHHVEVPYKVAINEAVELAKSFG 124

Query: 139 YGDEPKFINAVLDKVS 154
             D  KF+N VLDK++
Sbjct: 125 GTDGFKFVNGVLDKLA 140


>gi|85058631|ref|YP_454333.1| transcription antitermination protein NusB [Sodalis glossinidius
           str. 'morsitans']
 gi|119390825|sp|Q2NV97|NUSB_SODGM RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|84779151|dbj|BAE73928.1| N utilization substance protein B [Sodalis glossinidius str.
           'morsitans']
          Length = 139

 Score = 52.4 bits (124), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 38/134 (28%), Positives = 64/134 (47%), Gaps = 13/134 (9%)

Query: 23  AVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQH 82
           AVQALY   +      +I  ++   +  +D           VD+ +FR +  G     Q 
Sbjct: 13  AVQALYSWQLSHNDIADIEVQFLAEQDTSD-----------VDVAYFRDLYAGAATNAQE 61

Query: 83  IDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDE 142
           +D L++  L+ +     L  +  ++LR  + EL +   VP +V I+E + +A  F   + 
Sbjct: 62  LDKLMAPYLSRQ--LEELGHVERAVLRIALFELSKRQDVPYKVAINEAIELAKTFGAEES 119

Query: 143 PKFINAVLDKVSRK 156
            KFIN VLDKV+ +
Sbjct: 120 HKFINGVLDKVAPQ 133


>gi|209559915|ref|YP_002286387.1| transcription antitermination protein NusB [Streptococcus pyogenes
           NZ131]
 gi|238055478|sp|B5XI30|NUSB_STRPZ RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|209541116|gb|ACI61692.1| N utilization substance B-like protein [Streptococcus pyogenes
           NZ131]
          Length = 150

 Score = 52.4 bits (124), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 42/154 (27%), Positives = 77/154 (50%), Gaps = 21/154 (13%)

Query: 2   TIQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYE-TYRFCADTELDVESV 60
           + Q++++DL         R  A QAL+ I++      E+++  +  Y +   T  D + +
Sbjct: 4   SFQNSRRDL---------RERAFQALFNIEM----GAELLAASQFAYGYDKVTGEDAQVL 50

Query: 61  YLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHS 120
            L +   +   ++ GV + K+ +D LIS+ L + WS  RL +   ++LR G+ E+     
Sbjct: 51  ELPI---FLLSLVTGVNNHKEELDNLISTHLKKGWSLERLTLTDKTLLRLGLFEIKYFDE 107

Query: 121 VPVEVIISEYVCIAHDFFYGDE--PKFINAVLDK 152
            P  V ++E + +A    Y DE   KFIN +L +
Sbjct: 108 TPDRVALNEIIEVAKK--YSDETSAKFINGLLSQ 139


>gi|297195528|ref|ZP_06912926.1| transcription antitermination protein NusB [Streptomyces
           pristinaespiralis ATCC 25486]
 gi|297152834|gb|EFH32015.1| transcription antitermination protein NusB [Streptomyces
           pristinaespiralis ATCC 25486]
          Length = 142

 Score = 52.4 bits (124), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 36/137 (26%), Positives = 62/137 (45%), Gaps = 9/137 (6%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           R  AR  A Q L++ D  G +   +++++   R     E         +DL      + G
Sbjct: 4   RNKARKRAFQILFEADQRGATVHTVLADW--VRHARTDERQPPVAEYTMDL------VEG 55

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
             +    ID LI++     W+  R+ ++  +ILR G  EL+     P  V+I E V +A 
Sbjct: 56  YAEHADRIDELIATYAV-GWTIDRMPVVDRNILRLGAYELVWKDETPDAVVIDEAVQLAK 114

Query: 136 DFFYGDEPKFINAVLDK 152
           +F   + P F+N +L +
Sbjct: 115 EFSTDESPAFVNGLLGR 131


>gi|306826738|ref|ZP_07460040.1| transcription antitermination factor NusB [Streptococcus pyogenes
           ATCC 10782]
 gi|68052494|sp|Q5XA94|NUSB_STRP6 RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|304431027|gb|EFM34034.1| transcription antitermination factor NusB [Streptococcus pyogenes
           ATCC 10782]
          Length = 150

 Score = 52.4 bits (124), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 42/154 (27%), Positives = 77/154 (50%), Gaps = 21/154 (13%)

Query: 2   TIQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYE-TYRFCADTELDVESV 60
           + Q++++DL         R  A QAL+ I+    +  E+++  +  Y +   T  D + +
Sbjct: 4   SFQNSRRDL---------RERAFQALFNIE----TGAELLAASQFAYGYDKVTGEDAQVL 50

Query: 61  YLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHS 120
            L +   +   ++ GV + K+ +D LIS+ L + WS  RL +   ++LR G+ E+     
Sbjct: 51  ELPI---FLLSLVTGVNNHKEELDNLISTHLKKGWSLERLTLTDKTLLRLGLFEIKYFDE 107

Query: 121 VPVEVIISEYVCIAHDFFYGDE--PKFINAVLDK 152
            P  V ++E + +A    Y DE   KFIN +L +
Sbjct: 108 TPDRVALNEIIEVAKK--YSDETSAKFINGLLSQ 139


>gi|108562426|ref|YP_626742.1| transcription antitermination protein NusB [Helicobacter pylori
           HPAG1]
 gi|208433977|ref|YP_002265643.1| N utilization substance protein B [Helicobacter pylori G27]
 gi|217031745|ref|ZP_03437249.1| hypothetical protein HPB128_155g58 [Helicobacter pylori B128]
 gi|298737115|ref|YP_003729645.1| N utilization substance protein B [Helicobacter pylori B8]
 gi|308182189|ref|YP_003926316.1| transcription antitermination protein NusB [Helicobacter pylori
           PeCan4]
 gi|119390776|sp|Q1CVF4|NUSB_HELPH RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|238055475|sp|B5Z6D7|NUSB_HELPG RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|107836199|gb|ABF84068.1| N utilization substance protein B [Helicobacter pylori HPAG1]
 gi|208431906|gb|ACI26777.1| N utilization substance protein B [Helicobacter pylori G27]
 gi|216946592|gb|EEC25192.1| hypothetical protein HPB128_155g58 [Helicobacter pylori B128]
 gi|298356309|emb|CBI67181.1| N utilization substance protein B [Helicobacter pylori B8]
 gi|308064374|gb|ADO06266.1| transcription antitermination protein NusB [Helicobacter pylori
           PeCan4]
 gi|317179797|dbj|BAJ57583.1| transcription antitermination protein NusB [Helicobacter pylori
           F32]
          Length = 138

 Score = 52.0 bits (123), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 42/141 (29%), Positives = 68/141 (48%), Gaps = 13/141 (9%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           R  AR A V+ LY  +          S  E  +  A + L+ + +  +  L +   + +G
Sbjct: 4   RTQARGAVVELLYAFE----------SGNEEIKKIASSMLEEKKIK-NNQLAFALSLFNG 52

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
           V++R   ID LI   L + W F RL  +  +ILR G  E I        +II+E + +  
Sbjct: 53  VLERINEIDALIEPHLKD-WDFKRLGSMEKAILRLGAYE-IGFTPTQNPIIINECIELGK 110

Query: 136 DFFYGDEPKFINAVLDKVSRK 156
            +   + PKF+NA+LD +S+K
Sbjct: 111 LYAEPNTPKFLNAILDSLSKK 131


>gi|300741572|ref|ZP_07071593.1| transcription antitermination factor NusB [Rothia dentocariosa
           M567]
 gi|311113665|ref|YP_003984887.1| transcription antitermination factor NusB [Rothia dentocariosa ATCC
           17931]
 gi|300380757|gb|EFJ77319.1| transcription antitermination factor NusB [Rothia dentocariosa
           M567]
 gi|310945159|gb|ADP41453.1| transcription antitermination factor NusB [Rothia dentocariosa ATCC
           17931]
          Length = 136

 Score = 52.0 bits (123), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 42/138 (30%), Positives = 61/138 (44%), Gaps = 14/138 (10%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           R  ARL AV+ L++ D       +II   +  R     ++   S Y          I+ G
Sbjct: 4   RTKARLRAVEVLFEAD---QRQEDIIDVLKRRRLHTAAQI---SAYAEE-------IVRG 50

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
           V +    I   + +   + WSF R+  +   ILR G  EL+    VP  V ISE   +A 
Sbjct: 51  VREHDDEIREYLETYARD-WSFERMPAVDRVILRIGAWELLYNDDVPDAVAISEATGLAR 109

Query: 136 DFFYGDEPKFINAVLDKV 153
                D PKF+N +LDK+
Sbjct: 110 VLSTNDSPKFVNGLLDKL 127


>gi|167855582|ref|ZP_02478342.1| transcription antitermination protein NusB [Haemophilus parasuis
           29755]
 gi|167853273|gb|EDS24527.1| transcription antitermination protein NusB [Haemophilus parasuis
           29755]
          Length = 137

 Score = 52.0 bits (123), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 46/145 (31%), Positives = 71/145 (48%), Gaps = 14/145 (9%)

Query: 10  LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF 69
           +K+S RR  AR  AVQALY   I   S  ++        F  D ++        VD+ +F
Sbjct: 1   MKVSPRRR-ARECAVQALYSWYISQNSIEQV-----ELAFVTDQDMQ------GVDMPYF 48

Query: 70  RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISE 129
           R ++ G ++    ID ++   L    + + LD I  +ILR    EL     VP +V I+E
Sbjct: 49  RKLLRGTVENVDVIDDILRPYLDR--ADNELDPIERTILRLASYELKFELDVPYKVAINE 106

Query: 130 YVCIAHDFFYGDEPKFINAVLDKVS 154
            + +A  F   D  K++N VLDK++
Sbjct: 107 AIEVAKVFGSDDSHKYVNGVLDKLA 131


>gi|56461241|ref|YP_156522.1| transcription termination factor NusB [Idiomarina loihiensis L2TR]
 gi|81599971|sp|Q5QVE5|NUSB_IDILO RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|56180251|gb|AAV82973.1| Transcription termination factor NusB [Idiomarina loihiensis L2TR]
          Length = 139

 Score = 52.0 bits (123), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 42/144 (29%), Positives = 69/144 (47%), Gaps = 14/144 (9%)

Query: 10  LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF 69
           +K + RR  AR  AVQA+Y   +   S ++I +++ T           E+    VD+++F
Sbjct: 1   MKPAARRK-ARKLAVQAIYSWQLSQNSFSDIEAQFLT-----------ENDTSKVDVDYF 48

Query: 70  RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISE 129
             ++ GV    + +D  +   L        LD I  ++LR    EL E   VP +V I+E
Sbjct: 49  LELVRGVGGHYRTLDEALEPFLDR--PIKELDPIELAVLRLAAYELRERVDVPYKVAINE 106

Query: 130 YVCIAHDFFYGDEPKFINAVLDKV 153
            + +A  F   +  +F+N VLDK 
Sbjct: 107 AIELAKSFGADESHRFVNGVLDKA 130


>gi|59711311|ref|YP_204087.1| transcription antitermination protein NusB [Vibrio fischeri ES114]
 gi|197335476|ref|YP_002155467.1| transcription antitermination factor NusB [Vibrio fischeri MJ11]
 gi|31076819|sp|Q8G9G3|NUSB_VIBFI RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|75431770|sp|Q5E6Z7|NUSB_VIBF1 RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|238690266|sp|B5FBF9|NUSB_VIBFM RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|26522774|dbj|BAC44861.1| NusB protein [Vibrio fischeri]
 gi|59479412|gb|AAW85199.1| transcription antitermination factor NusB [Vibrio fischeri ES114]
 gi|197316966|gb|ACH66413.1| transcription antitermination factor NusB [Vibrio fischeri MJ11]
          Length = 155

 Score = 52.0 bits (123), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 40/148 (27%), Positives = 69/148 (46%), Gaps = 6/148 (4%)

Query: 10  LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHV---DL 66
           +K + RR  AR  A+QA+Y   +   +  +I  ++ T     + E       L     D+
Sbjct: 5   VKPAARRN-ARQFALQAIYSWQLSKENVADIEEQFLTAEKYDEEEHHANEPKLQTPETDV 63

Query: 67  EWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVI 126
            +FR +  GV      +D  +   L+       LD +  ++LR  + E++    VP +V+
Sbjct: 64  AYFRDLFSGVALNHMKLDGKMRPYLSR--PLQDLDQMELALLRMSIYEMMNRDDVPYKVV 121

Query: 127 ISEYVCIAHDFFYGDEPKFINAVLDKVS 154
           I+E + +A  F   D  KF+N VLDK +
Sbjct: 122 INEAIELAKVFAAEDSHKFVNGVLDKAA 149


>gi|317013425|gb|ADU80861.1| transcription antitermination protein NusB [Helicobacter pylori
           Gambia94/24]
          Length = 138

 Score = 52.0 bits (123), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 42/141 (29%), Positives = 68/141 (48%), Gaps = 13/141 (9%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           R  AR A V+ LY  +          S  E  +  A + L+ + +  +  L +   + +G
Sbjct: 4   RTQARGAVVELLYAFE----------SGNEEIKKIASSMLEEKKIK-NNQLAFALSLFNG 52

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
           V++R   ID LI   L + W F RL  +  +ILR G  E I        +II+E + +  
Sbjct: 53  VLERINEIDALIEPHLKD-WDFKRLGSMEKAILRLGAYE-IGFTPTQNPIIINECIELGK 110

Query: 136 DFFYGDEPKFINAVLDKVSRK 156
            +   + PKF+NA+LD +S+K
Sbjct: 111 LYAEPNTPKFLNAILDSLSKK 131


>gi|307720293|ref|YP_003891433.1| NusB antitermination factor [Sulfurimonas autotrophica DSM 16294]
 gi|306978386|gb|ADN08421.1| NusB antitermination factor [Sulfurimonas autotrophica DSM 16294]
          Length = 135

 Score = 52.0 bits (123), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 43/145 (29%), Positives = 65/145 (44%), Gaps = 13/145 (8%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           R  AR+A V  LY  D+   +T+E  +E    +   + + D           +   +  G
Sbjct: 4   RQQARMAVVSLLYAYDLGNGNTSEHSNEILEEKKIRNKQKD-----------FALGLYEG 52

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
           VM+  + ID  I   L E W F RL  I  + LR    E++    +   V+I+E V I  
Sbjct: 53  VMEHIEEIDKAIVEHLKE-WDFERLGAIERATLRLATYEIL-FGELDSAVVINEAVEITK 110

Query: 136 DFFYGDEPKFINAVLDKVSRKEEIK 160
            F     PKFIN VLD +++  + K
Sbjct: 111 SFGTEQSPKFINGVLDAIAKDHKAK 135


>gi|295111308|emb|CBL28058.1| transcription antitermination factor NusB [Synergistetes bacterium
           SGP1]
          Length = 180

 Score = 52.0 bits (123), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 41/146 (28%), Positives = 71/146 (48%), Gaps = 12/146 (8%)

Query: 23  AVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQH 82
           AVQ LY ++   C   + + E       A++  + E   +    E+ R ++ G   R+  
Sbjct: 34  AVQFLYSME---CGPGQDLEEALELFLGAESCAEAEPPAVK---EYCRALVRGTWSRRTE 87

Query: 83  IDLLISSCLTEKWSFSRLDMILCSILRAGVLE-LIECHSVPVEVIISEYVCIAHDFFYGD 141
           +D ++ S +T  W   R+  +  ++LR  V E  ++C ++P +  ISE V +A  F   D
Sbjct: 88  VDEVLLSVVT-NWRPERMVAVDRAVLRLAVFEGFLDC-ALPFKSAISEAVNLARSFGTED 145

Query: 142 EPKFINAVLDKVSRK---EEIKRSGC 164
             +F+N VL +V R+   EE K  G 
Sbjct: 146 SARFVNGVLARVVRRLIPEERKEGGA 171


>gi|71904194|ref|YP_280997.1| transcription antitermination protein NusB [Streptococcus pyogenes
           MGAS6180]
 gi|94989179|ref|YP_597280.1| transcription antitermination protein NusB [Streptococcus pyogenes
           MGAS9429]
 gi|94993067|ref|YP_601166.1| transcription antitermination protein NusB [Streptococcus pyogenes
           MGAS2096]
 gi|71803289|gb|AAX72642.1| N utilization substance protein B [Streptococcus pyogenes MGAS6180]
 gi|94542687|gb|ABF32736.1| N utilization substance protein B [Streptococcus pyogenes MGAS9429]
 gi|94546575|gb|ABF36622.1| N utilization substance protein B [Streptococcus pyogenes MGAS2096]
          Length = 156

 Score = 52.0 bits (123), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 42/154 (27%), Positives = 77/154 (50%), Gaps = 21/154 (13%)

Query: 2   TIQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYE-TYRFCADTELDVESV 60
           + Q++++DL         R  A QAL+ I++      E+++  +  Y +   T  D + +
Sbjct: 10  SFQNSRRDL---------RERAFQALFNIEM----GAELLAASQFAYGYDKVTGEDAQVL 56

Query: 61  YLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHS 120
            L +   +   ++ GV + K+ +D LIS+ L + WS  RL +   ++LR G+ E+     
Sbjct: 57  ELPI---FLLSLVTGVNNHKEELDNLISTHLKKGWSLERLTLTDKTLLRLGLFEIKYFDE 113

Query: 121 VPVEVIISEYVCIAHDFFYGDE--PKFINAVLDK 152
            P  V ++E + +A    Y DE   KFIN +L +
Sbjct: 114 TPDRVALNEIIEVAKK--YSDETSAKFINGLLSQ 145


>gi|32034438|ref|ZP_00134620.1| COG0781: Transcription termination factor [Actinobacillus
           pleuropneumoniae serovar 1 str. 4074]
 gi|126207689|ref|YP_001052914.1| transcription antitermination protein NusB [Actinobacillus
           pleuropneumoniae L20]
 gi|165975657|ref|YP_001651250.1| transcription antitermination protein NusB [Actinobacillus
           pleuropneumoniae serovar 3 str. JL03]
 gi|190149473|ref|YP_001967998.1| transcription antitermination protein NusB [Actinobacillus
           pleuropneumoniae serovar 7 str. AP76]
 gi|307245014|ref|ZP_07527111.1| N utilization substance protein B [Actinobacillus pleuropneumoniae
           serovar 1 str. 4074]
 gi|307247188|ref|ZP_07529239.1| N utilization substance protein B [Actinobacillus pleuropneumoniae
           serovar 2 str. S1536]
 gi|307249415|ref|ZP_07531406.1| N utilization substance protein B [Actinobacillus pleuropneumoniae
           serovar 4 str. M62]
 gi|307251733|ref|ZP_07533637.1| N utilization substance protein B [Actinobacillus pleuropneumoniae
           serovar 6 str. Femo]
 gi|307253967|ref|ZP_07535819.1| N utilization substance protein B [Actinobacillus pleuropneumoniae
           serovar 9 str. CVJ13261]
 gi|307256228|ref|ZP_07538015.1| N utilization substance protein B [Actinobacillus pleuropneumoniae
           serovar 10 str. D13039]
 gi|307258422|ref|ZP_07540163.1| N utilization substance protein B [Actinobacillus pleuropneumoniae
           serovar 11 str. 56153]
 gi|307260660|ref|ZP_07542352.1| N utilization substance protein B [Actinobacillus pleuropneumoniae
           serovar 12 str. 1096]
 gi|307262792|ref|ZP_07544419.1| N utilization substance protein B [Actinobacillus pleuropneumoniae
           serovar 13 str. N273]
 gi|166215658|sp|A3MYS3|NUSB_ACTP2 RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|238687518|sp|B0BSK4|NUSB_ACTPJ RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|238692374|sp|B3H044|NUSB_ACTP7 RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|126096481|gb|ABN73309.1| transcription antitermination protein NusB [Actinobacillus
           pleuropneumoniae serovar 5b str. L20]
 gi|165875758|gb|ABY68806.1| transcription termination factor [Actinobacillus pleuropneumoniae
           serovar 3 str. JL03]
 gi|189914604|gb|ACE60856.1| transcription antitermination protein NusB [Actinobacillus
           pleuropneumoniae serovar 7 str. AP76]
 gi|306854179|gb|EFM86387.1| N utilization substance protein B [Actinobacillus pleuropneumoniae
           serovar 1 str. 4074]
 gi|306856326|gb|EFM88478.1| N utilization substance protein B [Actinobacillus pleuropneumoniae
           serovar 2 str. S1536]
 gi|306858557|gb|EFM90622.1| N utilization substance protein B [Actinobacillus pleuropneumoniae
           serovar 4 str. M62]
 gi|306860819|gb|EFM92828.1| N utilization substance protein B [Actinobacillus pleuropneumoniae
           serovar 6 str. Femo]
 gi|306863171|gb|EFM95113.1| N utilization substance protein B [Actinobacillus pleuropneumoniae
           serovar 9 str. CVJ13261]
 gi|306865409|gb|EFM97305.1| N utilization substance protein B [Actinobacillus pleuropneumoniae
           serovar 10 str. D13039]
 gi|306867606|gb|EFM99453.1| N utilization substance protein B [Actinobacillus pleuropneumoniae
           serovar 11 str. 56153]
 gi|306869737|gb|EFN01522.1| N utilization substance protein B [Actinobacillus pleuropneumoniae
           serovar 12 str. 1096]
 gi|306871937|gb|EFN03654.1| N utilization substance protein B [Actinobacillus pleuropneumoniae
           serovar 13 str. N273]
          Length = 137

 Score = 52.0 bits (123), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 46/145 (31%), Positives = 71/145 (48%), Gaps = 14/145 (9%)

Query: 10  LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF 69
           +K+S RR  AR  AVQALY   +   S  E+        F  D +++       VDL +F
Sbjct: 1   MKVSPRRR-ARECAVQALYSWYVSQNSVEEV-----ELSFVTDQDMN------GVDLPYF 48

Query: 70  RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISE 129
           R ++ G +   + ID  +   L    +   +D I  +ILR    EL     VP +V+I+E
Sbjct: 49  RKLLRGTVLYVEAIDNDLRPFLDR--AEDEVDPIERTILRLSAYELKYELDVPYKVVINE 106

Query: 130 YVCIAHDFFYGDEPKFINAVLDKVS 154
            + +A  F   D  K+IN +LDK++
Sbjct: 107 GIEVAKVFGSDDSHKYINGILDKLA 131


>gi|229493670|ref|ZP_04387455.1| transcription antitermination factor NusB [Rhodococcus erythropolis
           SK121]
 gi|229319631|gb|EEN85467.1| transcription antitermination factor NusB [Rhodococcus erythropolis
           SK121]
          Length = 165

 Score = 52.0 bits (123), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 29/82 (35%), Positives = 42/82 (51%), Gaps = 1/82 (1%)

Query: 72  IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
           ++ GV +    ID +ISS L + W+  RL  +  +ILR  V EL     VP  V + E V
Sbjct: 59  LVSGVAENLDRIDQVISSHL-QDWTLERLPAVDRAILRIAVWELFHATDVPPVVAVDEAV 117

Query: 132 CIAHDFFYGDEPKFINAVLDKV 153
            +A      D P F+N +L +V
Sbjct: 118 ELAKQLSTDDSPGFVNGILGQV 139


>gi|226306485|ref|YP_002766445.1| transcription antitermination protein NusB [Rhodococcus
           erythropolis PR4]
 gi|259514883|sp|C0ZZC1|NUSB_RHOE4 RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|226185602|dbj|BAH33706.1| transcription antitermination protein NusB [Rhodococcus
           erythropolis PR4]
          Length = 165

 Score = 52.0 bits (123), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 29/82 (35%), Positives = 42/82 (51%), Gaps = 1/82 (1%)

Query: 72  IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
           ++ GV +    ID +ISS L + W+  RL  +  +ILR  V EL     VP  V + E V
Sbjct: 59  LVSGVAENLDRIDQVISSHL-QDWTLERLPAVDRAILRIAVWELFHATDVPPVVAVDEAV 117

Query: 132 CIAHDFFYGDEPKFINAVLDKV 153
            +A      D P F+N +L +V
Sbjct: 118 ELAKQLSTDDSPGFVNGILGQV 139


>gi|29654709|ref|NP_820401.1| transcription antitermination protein NusB [Coxiella burnetii RSA
           493]
 gi|161829811|ref|YP_001597256.1| transcription antitermination protein NusB [Coxiella burnetii RSA
           331]
 gi|212212219|ref|YP_002303155.1| transcription antitermination protein NusB [Coxiella burnetii
           CbuG_Q212]
 gi|39931899|sp|Q83BT5|NUSB_COXBU RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|189035886|sp|A9KBN6|NUSB_COXBN RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|189035887|sp|A9N8T6|NUSB_COXBR RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|238055350|sp|B6IZ82|NUSB_COXB2 RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|29541977|gb|AAO90915.1| N utilization substance protein B [Coxiella burnetii RSA 493]
 gi|161761678|gb|ABX77320.1| transcription antitermination factor NusB [Coxiella burnetii RSA
           331]
 gi|212010629|gb|ACJ18010.1| N utilization substance protein B [Coxiella burnetii CbuG_Q212]
          Length = 138

 Score = 52.0 bits (123), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 40/139 (28%), Positives = 68/139 (48%), Gaps = 13/139 (9%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           R  AR  A+QALYQ          +IS++      +DT           D+ +F+ ++ G
Sbjct: 6   RHNARRYALQALYQWFFCETKPDALISQFMEEHDLSDT-----------DVAYFKEVVTG 54

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
            +     ID L+++ L  K   S L+ +  S+LR  + EL+    VP +V+I E + +  
Sbjct: 55  TIQHVAIIDELMTAHLDRK--ISALNPVELSVLRLSIYELLHRKEVPYKVVIDEALELVK 112

Query: 136 DFFYGDEPKFINAVLDKVS 154
           +F      K++NA+LD +S
Sbjct: 113 EFGAEAGHKYVNAILDVLS 131


>gi|269836410|ref|YP_003318638.1| NusB antitermination factor [Sphaerobacter thermophilus DSM 20745]
 gi|269785673|gb|ACZ37816.1| NusB antitermination factor [Sphaerobacter thermophilus DSM 20745]
          Length = 140

 Score = 52.0 bits (123), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 39/136 (28%), Positives = 68/136 (50%), Gaps = 12/136 (8%)

Query: 19  ARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMD 78
           AR  A+Q LY+ D+     +++++     R+ +D  L  + V  +V+      +I GVM+
Sbjct: 10  ARTLALQILYEADVAQHPASDVLA-----RYTSDLSLP-QPVRRYVER-----LISGVME 58

Query: 79  RKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFF 138
             + ID  I +     +   +L  I  +ILR  + EL   H VPV+  I+E V +A  F 
Sbjct: 59  DLEKIDAEIGAA-APAFPVDQLPPIDRNILRIAIYELRNEHDVPVKAAINEAVELAKRFG 117

Query: 139 YGDEPKFINAVLDKVS 154
             +  +F+N VL  ++
Sbjct: 118 GDNSSRFVNGVLGTIA 133


>gi|296394716|ref|YP_003659600.1| NusB antitermination factor [Segniliparus rotundus DSM 44985]
 gi|296181863|gb|ADG98769.1| NusB antitermination factor [Segniliparus rotundus DSM 44985]
          Length = 157

 Score = 52.0 bits (123), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 42/145 (28%), Positives = 65/145 (44%), Gaps = 11/145 (7%)

Query: 12  LSHRRGI---ARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEW 68
           LS R G    AR  AV+ L++ +       E+ +E       A+   D+ +  L     +
Sbjct: 8   LSKRAGSRRKARRRAVELLFEAEARDLDPAELAAER-----SAELVKDLSAPQLT---PY 59

Query: 69  FRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIIS 128
             +++ GV D    +D  I   L   W+  RL  +  SILR  V EL+    VP  V + 
Sbjct: 60  ALLLLEGVRDNLDVVDQTIIDHLRGGWTLQRLPAVDRSILRIAVWELLFATEVPTAVAVD 119

Query: 129 EYVCIAHDFFYGDEPKFINAVLDKV 153
           E + +A +    D P FIN VL ++
Sbjct: 120 EALELAKELSTDDSPSFINGVLGQL 144


>gi|315031736|gb|EFT43668.1| transcription antitermination factor NusB [Enterococcus faecalis
           TX0017]
          Length = 156

 Score = 52.0 bits (123), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 38/141 (26%), Positives = 65/141 (46%), Gaps = 11/141 (7%)

Query: 20  RLAAVQALYQIDIIGCSTTEIISEY----ETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           R  A+QAL+ +D     T +   +Y    +     ++   D+   YL +       ++ G
Sbjct: 18  REKALQALFPLDFNADLTKQDAIDYALAYDNREIVSEDSEDLVPTYLDL-------LVGG 70

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
           V  RK  +D +I++ L   WS  RL  I   ILR  + E++    VP  V ++E V ++ 
Sbjct: 71  VCSRKAELDEVITNHLGNNWSMQRLAKIDIVILRLAIFEMLYVSDVPNIVALNEAVELSK 130

Query: 136 DFFYGDEPKFINAVLDKVSRK 156
            +      KF+N VL  V ++
Sbjct: 131 KYSDDRSRKFVNGVLSNVMKE 151


>gi|78065528|ref|YP_368297.1| transcription antitermination protein NusB [Burkholderia sp. 383]
 gi|119372282|sp|Q39IR3|NUSB_BURS3 RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|77966273|gb|ABB07653.1| NusB antitermination factor [Burkholderia sp. 383]
          Length = 145

 Score = 52.0 bits (123), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 44/147 (29%), Positives = 66/147 (44%), Gaps = 14/147 (9%)

Query: 10  LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF 69
           +K S RR  +R  A Q LYQ  +   S+ EI           D +L     Y   D E  
Sbjct: 1   MKKSARR-QSRELATQGLYQWLLSNASSGEI-----------DAQLRGALGYDKADKELL 48

Query: 70  RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISE 129
             I+HGV+  ++H  L+ +   +      +L  +  ++L     EL      P  VII+E
Sbjct: 49  EAILHGVI--REHATLVEALTPSLDRPIEQLSPVERAVLLIATFELTHHVETPYRVIINE 106

Query: 130 YVCIAHDFFYGDEPKFINAVLDKVSRK 156
            V +A  F   D  K++N VLDK++ K
Sbjct: 107 AVELAKTFGGSDGYKYVNGVLDKLAAK 133


>gi|262376860|ref|ZP_06070087.1| transcription antitermination factor NusB [Acinetobacter lwoffii
           SH145]
 gi|262308205|gb|EEY89341.1| transcription antitermination factor NusB [Acinetobacter lwoffii
           SH145]
          Length = 149

 Score = 52.0 bits (123), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 38/136 (27%), Positives = 63/136 (46%), Gaps = 13/136 (9%)

Query: 19  ARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMD 78
           AR  AVQ +Y+  +      EI           +    VE+    VDL ++  ++  V+ 
Sbjct: 15  ARRFAVQGIYEWQMSHNPVHEI-----------EARTRVENAMHKVDLSYYHELLTQVVA 63

Query: 79  RKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFF 138
             + +D L+   L  +   S LD +  + LR G  EL E   +P  V++ E + +A  F 
Sbjct: 64  NHEALDALLIPVLDRE--LSALDGVELATLRLGAYELKEHLEIPYRVVLDEAIELAKHFG 121

Query: 139 YGDEPKFINAVLDKVS 154
             D  K+IN VLD+++
Sbjct: 122 GADSHKYINGVLDRLA 137


>gi|256028476|ref|ZP_05442310.1| transcription antitermination protein NusB [Fusobacterium sp. D11]
 gi|289766397|ref|ZP_06525775.1| transcription antitermination protein NusB [Fusobacterium sp. D11]
 gi|289717952|gb|EFD81964.1| transcription antitermination protein NusB [Fusobacterium sp. D11]
          Length = 157

 Score = 52.0 bits (123), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 39/150 (26%), Positives = 76/150 (50%), Gaps = 12/150 (8%)

Query: 18  IARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVM 77
           +AR    + ++  ++ G S+ E+  ++  Y    D E    +      LE+ +  I+G++
Sbjct: 18  LAREEVFKLVFGAELTGSSSDELKQDFNIY-LQNDEEFI--NALSEKQLEFIKNSINGIV 74

Query: 78  DRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDF 137
           +   +I  +I    T+ W++ R+ +I  S+L  G  E +   + P+EVI +E V +A + 
Sbjct: 75  ENYDNIKDIIKKN-TQNWTYERIGVIERSLLIVGTYEFL-IKNTPIEVIANEIVELAKE- 131

Query: 138 FYGDEP--KFINAVLDKVSRKEEIKRSGCV 165
            YG+E   +FIN +L  +   E+ K  G +
Sbjct: 132 -YGNEKSYEFINGILANI---EKAKNKGTI 157


>gi|94995000|ref|YP_603098.1| transcription antitermination protein NusB [Streptococcus pyogenes
           MGAS10750]
 gi|94548508|gb|ABF38554.1| N utilization substance protein B [Streptococcus pyogenes
           MGAS10750]
          Length = 156

 Score = 52.0 bits (123), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 42/154 (27%), Positives = 77/154 (50%), Gaps = 21/154 (13%)

Query: 2   TIQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYE-TYRFCADTELDVESV 60
           + Q++++DL         R  A QAL+ I++      E+++  +  Y +   T  D + +
Sbjct: 10  SFQNSRRDL---------RERAFQALFNIEM----GAELLAASQFAYGYDKVTGEDAQVL 56

Query: 61  YLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHS 120
            L +   +   ++ GV + K+ +D LIS+ L + WS  RL +   ++LR G+ E+     
Sbjct: 57  ELPI---FLLSLVMGVNNHKEELDNLISTHLKKGWSLERLTLTDKTLLRLGLFEIKYFDE 113

Query: 121 VPVEVIISEYVCIAHDFFYGDE--PKFINAVLDK 152
            P  V ++E + +A    Y DE   KFIN +L +
Sbjct: 114 TPDRVALNEIIEVAKK--YSDETSAKFINGLLSQ 145


>gi|228477148|ref|ZP_04061786.1| transcription antitermination factor NusB [Streptococcus salivarius
           SK126]
 gi|312863702|ref|ZP_07723940.1| transcription antitermination factor NusB [Streptococcus
           vestibularis F0396]
 gi|322516050|ref|ZP_08068987.1| transcription antitermination factor NusB [Streptococcus
           vestibularis ATCC 49124]
 gi|228251167|gb|EEK10338.1| transcription antitermination factor NusB [Streptococcus salivarius
           SK126]
 gi|311101238|gb|EFQ59443.1| transcription antitermination factor NusB [Streptococcus
           vestibularis F0396]
 gi|322125465|gb|EFX96811.1| transcription antitermination factor NusB [Streptococcus
           vestibularis ATCC 49124]
          Length = 144

 Score = 52.0 bits (123), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 45/153 (29%), Positives = 71/153 (46%), Gaps = 22/153 (14%)

Query: 3   IQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYL 62
            +D+++DL         R  A Q L+ ++  G +      E   + +  D  +D E+   
Sbjct: 5   FKDSRRDL---------RERAFQTLFALEFGGEAL-----EQAHFAYTYDKPIDEET--- 47

Query: 63  HVDLEWFRV-IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSV 121
            VD+  F + ++ GV +    +D  I   L E WS SRL +   ++LR G+ E+      
Sbjct: 48  EVDVPAFLLSLVTGVREELAQLDSQIEEKLKEGWSLSRLIVTDRTLLRLGLYEITSFEET 107

Query: 122 PVEVIISEYVCIAHDFFYGDE--PKFINAVLDK 152
           P  V I+E + IA    Y DE   KFIN VL +
Sbjct: 108 PGRVAINEIIEIAKK--YSDETSAKFINGVLSQ 138


>gi|239816087|ref|YP_002944997.1| NusB antitermination factor [Variovorax paradoxus S110]
 gi|259514920|sp|C5CPZ2|NUSB_VARPS RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|239802664|gb|ACS19731.1| NusB antitermination factor [Variovorax paradoxus S110]
          Length = 181

 Score = 52.0 bits (123), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 40/139 (28%), Positives = 66/139 (47%), Gaps = 13/139 (9%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           R  AR  A+QALYQ  +     TEI        F  D      + +   D   +  ++HG
Sbjct: 37  RSRAREFALQALYQHLVGRNDPTEID------HFTRDL-----AGFHKADAAHYDALLHG 85

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
            ++  + +D LI   L  K  F  +  I  +++  GV E   C  VP  V+++E + +A 
Sbjct: 86  SIEGAEQLDALIRPLLDRK--FEEISPIEHAVMWIGVYEFQHCLDVPWRVVLNECIELAK 143

Query: 136 DFFYGDEPKFINAVLDKVS 154
           +F   D  K++NAVL+ ++
Sbjct: 144 EFGGTDGHKYVNAVLNGLA 162


>gi|319939911|ref|ZP_08014266.1| transcription antitermination protein NusB [Streptococcus anginosus
           1_2_62CV]
 gi|319810922|gb|EFW07241.1| transcription antitermination protein NusB [Streptococcus anginosus
           1_2_62CV]
          Length = 141

 Score = 52.0 bits (123), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 46/150 (30%), Positives = 73/150 (48%), Gaps = 21/150 (14%)

Query: 9   DLKLSHRRGIARLAAVQAL----YQIDII-GCSTTEIISEYETYRFCADTELDVESVYLH 63
           D++L  RR + R  A QAL    Y+ DI+  C           + +  D ++  +S    
Sbjct: 3   DVQLEARREL-RERAFQALMSLEYEKDIVEACR----------FAYLYDKDMTNDS---D 48

Query: 64  VDLEWFRV-IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVP 122
           V+L  F + ++ GV   K  +D  +S  L E W+  RL +I  +ILR G+ E+ E  + P
Sbjct: 49  VELPAFLLNLVMGVEQSKNELDDKLSQYLKEGWTLERLTLIEKNILRLGLFEMTEFDT-P 107

Query: 123 VEVIISEYVCIAHDFFYGDEPKFINAVLDK 152
             V I+E + ++  F      KFIN +L K
Sbjct: 108 QLVAINEAIELSKKFSDEKSSKFINGILSK 137


>gi|329116212|ref|ZP_08244929.1| transcription antitermination factor NusB [Streptococcus parauberis
           NCFD 2020]
 gi|326906617|gb|EGE53531.1| transcription antitermination factor NusB [Streptococcus parauberis
           NCFD 2020]
          Length = 143

 Score = 52.0 bits (123), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 47/159 (29%), Positives = 77/159 (48%), Gaps = 22/159 (13%)

Query: 2   TIQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVY 61
           + Q++++DL         R  A QAL+ +++ G    E +   E  +F  D +  VE   
Sbjct: 4   SFQNSRRDL---------RERAFQALFNMELGG----EFL---EASQFAYDYDKIVEEGE 47

Query: 62  LHVDLEWFRV-IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHS 120
              D+  F + +++GV D K  +D LI+  L   WS  RL +   ++LR G+ E+     
Sbjct: 48  -KSDVPAFLLNLVNGVNDHKVELDQLITENLKTGWSIERLTLSDKTMLRLGLYEIKYFEE 106

Query: 121 VPVEVIISEYVCIAHDFFYGDE--PKFINAVLDKVSRKE 157
            P  V ++E + IA    Y DE   KFIN +L +  + E
Sbjct: 107 TPDRVALNEIIEIAKK--YSDETSAKFINGLLSQFVKAE 143


>gi|187779509|ref|ZP_02995982.1| hypothetical protein CLOSPO_03105 [Clostridium sporogenes ATCC
           15579]
 gi|187773134|gb|EDU36936.1| hypothetical protein CLOSPO_03105 [Clostridium sporogenes ATCC
           15579]
          Length = 143

 Score = 52.0 bits (123), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 35/101 (34%), Positives = 51/101 (50%), Gaps = 2/101 (1%)

Query: 54  ELDVESVYLH-VDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGV 112
           E D ESV L  VD+++ + II G+ + K+ ID  I   L   W   RL  +  SILR   
Sbjct: 43  EKDYESVDLKDVDIDYVKRIIKGIEENKEEIDEKIKGNLK-NWKIERLSKVDLSILRLCT 101

Query: 113 LELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKV 153
            EL     +P +V ++E + +A  +       FIN VL K+
Sbjct: 102 YELKFEEDIPSKVSVNEAIELAKKYSGEKAATFINGVLGKM 142


>gi|50914880|ref|YP_060852.1| transcription antitermination protein NusB [Streptococcus pyogenes
           MGAS10394]
 gi|50903954|gb|AAT87669.1| N utilization substance protein B [Streptococcus pyogenes
           MGAS10394]
          Length = 156

 Score = 52.0 bits (123), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 42/154 (27%), Positives = 77/154 (50%), Gaps = 21/154 (13%)

Query: 2   TIQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYE-TYRFCADTELDVESV 60
           + Q++++DL         R  A QAL+ I+    +  E+++  +  Y +   T  D + +
Sbjct: 10  SFQNSRRDL---------RERAFQALFNIE----TGAELLAASQFAYGYDKVTGEDAQVL 56

Query: 61  YLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHS 120
            L +   +   ++ GV + K+ +D LIS+ L + WS  RL +   ++LR G+ E+     
Sbjct: 57  ELPI---FLLSLVTGVNNHKEELDNLISTHLKKGWSLERLTLTDKTLLRLGLFEIKYFDE 113

Query: 121 VPVEVIISEYVCIAHDFFYGDE--PKFINAVLDK 152
            P  V ++E + +A    Y DE   KFIN +L +
Sbjct: 114 TPDRVALNEIIEVAKK--YSDETSAKFINGLLSQ 145


>gi|325697632|gb|EGD39517.1| N utilization substance protein B [Streptococcus sanguinis SK160]
          Length = 143

 Score = 52.0 bits (123), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 43/146 (29%), Positives = 71/146 (48%), Gaps = 11/146 (7%)

Query: 9   DLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYL-HVDLE 67
           D+ L  RRG+ R  A QAL  ++  G          E  RF    + D E+  +   D+ 
Sbjct: 3   DILLESRRGL-RQRAFQALMSLEYEGDLV-------EACRFAYSYDKDEEADKVAEADIP 54

Query: 68  WFRV-IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVI 126
            F + ++ GV+  K  +D  I+  L + W+  RL ++  +ILR G+ E+ E  + P  V 
Sbjct: 55  AFLLNLVSGVVQSKDDLDKKIAQHLKKGWTVDRLTLVEKNILRLGIFEITEFDT-PQLVA 113

Query: 127 ISEYVCIAHDFFYGDEPKFINAVLDK 152
           ++E + ++  F      KFIN +L K
Sbjct: 114 VNEAIELSKQFSDEKSSKFINGILSK 139


>gi|260583696|ref|ZP_05851444.1| transcription antitermination factor NusB [Granulicatella elegans
           ATCC 700633]
 gi|260158322|gb|EEW93390.1| transcription antitermination factor NusB [Granulicatella elegans
           ATCC 700633]
          Length = 154

 Score = 52.0 bits (123), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 50/150 (33%), Positives = 75/150 (50%), Gaps = 22/150 (14%)

Query: 15  RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVES----VYLH------- 63
           +R   R+ A+QALYQ+DI  C     +SE++  R   D   D +S    VY +       
Sbjct: 7   KRRALRIIAIQALYQMDI--CKD---LSEFDAVRLALDVLHDEQSFDEEVYSNEALLDEF 61

Query: 64  VDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECH-SVP 122
            ++ +   +I GV ++ + ID LISS L + W  +R+  +   I+R  V E+      VP
Sbjct: 62  PEIHYSLDLIQGVQNQLEEIDALISSHL-KGWELNRIVRLDLMIMRVAVCEMRSPELEVP 120

Query: 123 VEVIISEYVCIAHDFFYGDE--PKFINAVL 150
             V ++E + IA    Y DE   KFIN VL
Sbjct: 121 QTVALNEAIEIAK--LYSDEKSAKFINGVL 148


>gi|228992930|ref|ZP_04152854.1| N utilization substance protein B [Bacillus pseudomycoides DSM
           12442]
 gi|228998974|ref|ZP_04158556.1| N utilization substance protein B [Bacillus mycoides Rock3-17]
 gi|229006513|ref|ZP_04164157.1| N utilization substance protein B [Bacillus mycoides Rock1-4]
 gi|228754739|gb|EEM04140.1| N utilization substance protein B [Bacillus mycoides Rock1-4]
 gi|228760591|gb|EEM09555.1| N utilization substance protein B [Bacillus mycoides Rock3-17]
 gi|228766787|gb|EEM15426.1| N utilization substance protein B [Bacillus pseudomycoides DSM
           12442]
          Length = 120

 Score = 52.0 bits (123), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 40/130 (30%), Positives = 61/130 (46%), Gaps = 14/130 (10%)

Query: 24  VQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHI 83
           +QALYQ+DI G        E E      +T  + E        E+   ++ G ++ K+ I
Sbjct: 1   MQALYQMDITG--------ELEPKVAVENTLEEGEETN-----EFLESLVVGCVEHKEAI 47

Query: 84  DLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEP 143
           D  I   L +KW   R+ ++  SILR  V E+     +P  V I+E + IA  F   +  
Sbjct: 48  DEAIRQNL-KKWKLERISIVDRSILRLAVYEMKYMEEIPHNVTINEAIEIAKTFGDEESR 106

Query: 144 KFINAVLDKV 153
           +FIN VL  +
Sbjct: 107 RFINGVLSNI 116


>gi|32265536|ref|NP_859568.1| transcription antitermination protein NusB [Helicobacter hepaticus
           ATCC 51449]
 gi|39931804|sp|Q7VK55|NUSB_HELHP RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|32261584|gb|AAP76634.1| transcription termination factor NusB [Helicobacter hepaticus ATCC
           51449]
          Length = 157

 Score = 52.0 bits (123), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 33/87 (37%), Positives = 49/87 (56%), Gaps = 7/87 (8%)

Query: 72  IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
           ++ GV++    IDL I+  L E W FSRL  +  ++LR G  E++   +    VII+E V
Sbjct: 49  LLQGVIEHLSQIDLCIAPYLKE-WEFSRLGGMERAMLRLGAFEILYTET-DTPVIINEAV 106

Query: 132 CIAHDFFYGDE---PKFINAVLDKVSR 155
            +     YG E   P+FIN VLD +S+
Sbjct: 107 ELGK--MYGGEDNAPRFINGVLDALSK 131


>gi|306820223|ref|ZP_07453865.1| transcription antitermination factor NusB [Eubacterium yurii subsp.
           margaretiae ATCC 43715]
 gi|304551720|gb|EFM39669.1| transcription antitermination factor NusB [Eubacterium yurii subsp.
           margaretiae ATCC 43715]
          Length = 212

 Score = 52.0 bits (123), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 47/202 (23%), Positives = 81/202 (40%), Gaps = 53/202 (26%)

Query: 1   MTIQDNKKDLKLSHRRGIARLAAVQALYQIDII-------------------------GC 35
           M + +NKK+  +S  R   R   +Q LYQ+DI                           C
Sbjct: 1   MNVDENKKNPNMSLSRKRQRQNVMQMLYQMDIQDNFTKSATINIDKKLKDEKYEISLDNC 60

Query: 36  STTE-------IISEYETYRFCADTEL------------DVESVYLH--------VDLEW 68
           +  E       +I+++   +   + EL            +V   Y +         D+ +
Sbjct: 61  NNIENIEHVKKLIADFSGEKIPENFELGDFIEQDDLITYEVTDTYSYSQENLKNFTDIGY 120

Query: 69  FRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIIS 128
            ++ I   +D K  ID  IS  L+EKW+  RL  I  +++R  + E I+   +P +V I+
Sbjct: 121 IKLFISSFLDNKDLIDSEISQVLSEKWTVKRLSKIDLALIRTAITE-IKYLDIPYKVAIN 179

Query: 129 EYVCIAHDFFYGDEPKFINAVL 150
           E + +A  +       FIN +L
Sbjct: 180 EALELAKKYSDEKSSSFINGIL 201


>gi|315222311|ref|ZP_07864217.1| transcription antitermination factor NusB [Streptococcus anginosus
           F0211]
 gi|315188644|gb|EFU22353.1| transcription antitermination factor NusB [Streptococcus anginosus
           F0211]
          Length = 141

 Score = 52.0 bits (123), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 42/148 (28%), Positives = 72/148 (48%), Gaps = 17/148 (11%)

Query: 9   DLKLSHRRGIARLAAVQAL----YQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHV 64
           D++L  RR + R  A QAL    Y+ DI+       + + +      D+++++ +  L+ 
Sbjct: 3   DVQLEARREL-RERAFQALMSLEYEKDIVEACRFAYLYDKD---MTNDSDVEIPAFLLN- 57

Query: 65  DLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVE 124
                  ++ GV   K  +D  +S  L E W+  RL +I  +ILR G+ E+ E  + P  
Sbjct: 58  -------LVTGVEQSKNELDDKLSQYLKEGWTLERLTLIEKNILRLGLFEMTEFDT-PQL 109

Query: 125 VIISEYVCIAHDFFYGDEPKFINAVLDK 152
           V I+E + ++  F      KFIN +L K
Sbjct: 110 VAINEAIELSKKFSDEKSSKFINGILSK 137


>gi|323353378|ref|ZP_08087911.1| N utilization substance protein B [Streptococcus sanguinis VMC66]
 gi|322121324|gb|EFX93087.1| N utilization substance protein B [Streptococcus sanguinis VMC66]
 gi|327472778|gb|EGF18205.1| N utilization substance protein B [Streptococcus sanguinis SK408]
          Length = 143

 Score = 52.0 bits (123), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 43/146 (29%), Positives = 73/146 (50%), Gaps = 11/146 (7%)

Query: 9   DLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVES-VYLHVDLE 67
           D+ L  RRG+ R  A QAL  ++  G    E++   E  RF    + D E+      D+ 
Sbjct: 3   DILLESRRGL-RQRAFQALMSLEYEG----ELV---EACRFAYSYDKDEEADKAAEADIP 54

Query: 68  WFRV-IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVI 126
            F + ++ GV+  K  +D  I+  L + W+  RL ++  +ILR G+ E+ E  + P  V 
Sbjct: 55  AFLLNLVSGVVQSKDDLDKKIAQHLKKGWTVDRLTLVEKNILRLGIFEITEFDT-PQLVA 113

Query: 127 ISEYVCIAHDFFYGDEPKFINAVLDK 152
           ++E + ++  F      KFIN +L +
Sbjct: 114 VNEAIELSKQFSDEKSSKFINGILSQ 139


>gi|57239039|ref|YP_180175.1| putative N utilization substance protein B-like protein [Ehrlichia
           ruminantium str. Welgevonden]
 gi|58578981|ref|YP_197193.1| putative N utilization substance protein B-like protein [Ehrlichia
           ruminantium str. Welgevonden]
 gi|58617039|ref|YP_196238.1| putative N utilization substance protein B-like protein [Ehrlichia
           ruminantium str. Gardel]
 gi|57161118|emb|CAH58029.1| hypothetical protein Erum3120 [Ehrlichia ruminantium str.
           Welgevonden]
 gi|58416651|emb|CAI27764.1| Putative N utilization substance protein B homolog [Ehrlichia
           ruminantium str. Gardel]
 gi|58417607|emb|CAI26811.1| Putative N utilization substance protein B homolog [Ehrlichia
           ruminantium str. Welgevonden]
          Length = 174

 Score = 52.0 bits (123), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 30/91 (32%), Positives = 51/91 (56%), Gaps = 1/91 (1%)

Query: 62  LHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSV 121
           +++D +    II  ++    +I+  I+  L EKWS  R+++I  SI++  + EL+ C   
Sbjct: 56  MYIDDQLLLKIISTMLIAFNNINSNIAGFLNEKWSIDRINLISLSIIKTAICELM-CSKT 114

Query: 122 PVEVIISEYVCIAHDFFYGDEPKFINAVLDK 152
              +II+EYV IA       E  FINA+L++
Sbjct: 115 DKIIIINEYVNIASQILERTEVNFINAILNQ 145


>gi|21674526|ref|NP_662591.1| N utilization substance protein B [Chlorobium tepidum TLS]
 gi|28201843|sp|Q8KBS4|NUSB_CHLTE RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|21647719|gb|AAM72933.1| N utilization substance protein B [Chlorobium tepidum TLS]
          Length = 164

 Score = 52.0 bits (123), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 37/142 (26%), Positives = 69/142 (48%), Gaps = 13/142 (9%)

Query: 13  SHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVI 72
           ++RR + R   +QALY +++    T    +   T     D             +++F  +
Sbjct: 3   TYRRQL-REKIIQALYTLELRDVDTDSAANWLLTKEIMDDPNA----------MKFFNHL 51

Query: 73  IHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVC 132
           +  ++  ++ ID  I+   T  W  SR+ +I  +ILR  + E++ C  +P +V I+E + 
Sbjct: 52  MQSIVRNREEIDRYIAKH-TFNWDMSRIAIIDKNILRMALAEILYCEDIPPKVSINEAIE 110

Query: 133 IAHDFFYGDE-PKFINAVLDKV 153
           IA  F   D+  KF+N +LD +
Sbjct: 111 IAKKFSSTDKSSKFVNGILDAI 132


>gi|332363255|gb|EGJ41040.1| N utilization substance protein B [Streptococcus sanguinis SK49]
          Length = 143

 Score = 52.0 bits (123), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 41/143 (28%), Positives = 71/143 (49%), Gaps = 9/143 (6%)

Query: 9   DLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEW 68
           D+ L  RRG+ R  A QAL  ++  G      + E   + +  D + D + V    D+  
Sbjct: 3   DILLESRRGL-RQRAFQALMSLEYEGD-----LVEACRFAYSYDKDEDADKVA-EADIPA 55

Query: 69  FRV-IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVII 127
           F + ++ GV+  K  +D  I+  L + W+  RL ++  +ILR G+ E+ E  + P  V +
Sbjct: 56  FLLNLVSGVVQSKDDLDKKIAQHLKKGWTVDRLTLVEKNILRLGIFEITEFDT-PQLVAV 114

Query: 128 SEYVCIAHDFFYGDEPKFINAVL 150
           +E + ++  F      KFIN +L
Sbjct: 115 NEAIELSKQFSDEKSSKFINGIL 137


>gi|219872292|ref|YP_002476667.1| transcription antitermination protein NusB [Haemophilus parasuis
           SH0165]
 gi|254772642|sp|B8F8R7|NUSB_HAEPS RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|219692496|gb|ACL33719.1| transcription antitermination protein N utilization substance B
           (NusB) [Haemophilus parasuis SH0165]
          Length = 137

 Score = 52.0 bits (123), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 46/145 (31%), Positives = 71/145 (48%), Gaps = 14/145 (9%)

Query: 10  LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF 69
           +K+S RR  AR  AVQALY   I   S  ++        F  D ++        VD+ +F
Sbjct: 1   MKVSPRRR-ARECAVQALYSWYISQNSIEQV-----ELAFVTDQDMQ------GVDMPYF 48

Query: 70  RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISE 129
           R ++ G ++    ID ++   L    + + LD I  +ILR    EL     VP +V I+E
Sbjct: 49  RKLLRGTVENVDVIDDILRPYLDR--ADNELDPIERTILRLAGYELKFELDVPYKVAINE 106

Query: 130 YVCIAHDFFYGDEPKFINAVLDKVS 154
            + +A  F   D  K++N VLDK++
Sbjct: 107 AIEVAKVFGSDDSHKYVNGVLDKLA 131


>gi|296161946|ref|ZP_06844746.1| NusB antitermination factor [Burkholderia sp. Ch1-1]
 gi|295887822|gb|EFG67640.1| NusB antitermination factor [Burkholderia sp. Ch1-1]
          Length = 144

 Score = 51.6 bits (122), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 41/145 (28%), Positives = 63/145 (43%), Gaps = 15/145 (10%)

Query: 10  LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF 69
           +K + RR  +R  A Q LYQ  + G    EI           D +L     +   D E  
Sbjct: 1   MKSARRR--SRELATQGLYQWLLSGSPGGEI-----------DAQLRGAQGFDKADHEHL 47

Query: 70  RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISE 129
             ++HGV+   + +   I  CL       +L  +  ++L     EL     +P  V+I+E
Sbjct: 48  NALLHGVIRDSEALSADIVPCLDR--PIEQLSPVERAVLLVAAFELKNHVDIPYRVVINE 105

Query: 130 YVCIAHDFFYGDEPKFINAVLDKVS 154
            V +A  F   D  K++N VLDK+S
Sbjct: 106 AVELAKTFGGADGYKYVNGVLDKLS 130


>gi|258592181|emb|CBE68490.1| N utilization substance protein B homolog (Protein nusB) [NC10
           bacterium 'Dutch sediment']
          Length = 143

 Score = 51.6 bits (122), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 40/140 (28%), Positives = 66/140 (47%), Gaps = 11/140 (7%)

Query: 15  RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74
           +R  AR  A+  LYQ++       E+    ++  F AD     E   L  +L      + 
Sbjct: 3   KRHRARELALSLLYQLEFYPLEAFEV----QSAAFWADHPAGPEIRSLTDEL------VQ 52

Query: 75  GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134
           G +  ++ ID +++S + E W  SRL ++   +LR    EL+     P +V I E + +A
Sbjct: 53  GTLQHQKPIDEVLASHV-EHWILSRLALVDLCVLRLAAFELLFYGKTPWKVAIDEAIELA 111

Query: 135 HDFFYGDEPKFINAVLDKVS 154
             F   D   F+N VLDK++
Sbjct: 112 KAFGGKDSGAFVNGVLDKLA 131


>gi|154502455|ref|ZP_02039515.1| hypothetical protein RUMGNA_00268 [Ruminococcus gnavus ATCC 29149]
 gi|153796851|gb|EDN79271.1| hypothetical protein RUMGNA_00268 [Ruminococcus gnavus ATCC 29149]
          Length = 132

 Score = 51.6 bits (122), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 29/90 (32%), Positives = 51/90 (56%), Gaps = 1/90 (1%)

Query: 65  DLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVE 124
           D E+ +  +  V+++ + ID +++   T  W  SR++ +  +ILR  V E+     VPV+
Sbjct: 43  DKEYIQKKLEAVVEKLEEIDAILNEKAT-GWKTSRMNKVDLAILRLAVYEIKWDDDVPVK 101

Query: 125 VIISEYVCIAHDFFYGDEPKFINAVLDKVS 154
           V I+E V +A  F   + P F+N VL K++
Sbjct: 102 VAINEAVELAKKFSGEEGPAFVNGVLAKIA 131


>gi|134298933|ref|YP_001112429.1| NusB antitermination factor [Desulfotomaculum reducens MI-1]
 gi|172044268|sp|A4J3F1|NUSB_DESRM RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|134051633|gb|ABO49604.1| NusB antitermination factor [Desulfotomaculum reducens MI-1]
          Length = 143

 Score = 51.6 bits (122), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 32/135 (23%), Positives = 67/135 (49%), Gaps = 12/135 (8%)

Query: 19  ARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMD 78
           AR  A+Q L+QID+ G +  ++        F A  +          ++E+ R ++ G ++
Sbjct: 6   ARETALQVLFQIDL-GKTEPDLALNNTAEEFGAGPQ----------EIEFARQLVMGTLE 54

Query: 79  RKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFF 138
             + ID +I    +++W  +R+  +  +I+R  + E+     +P  V ++E + ++  F 
Sbjct: 55  HIEEIDAMIGKV-SKEWQLNRMANVDRNIMRLAIFEMNYRADIPKSVSVNEALELSKIFG 113

Query: 139 YGDEPKFINAVLDKV 153
             D  +FIN +L K+
Sbjct: 114 TPDSVRFINGILGKL 128


>gi|229075890|ref|ZP_04208866.1| N utilization substance protein B [Bacillus cereus Rock4-18]
 gi|228707205|gb|EEL59402.1| N utilization substance protein B [Bacillus cereus Rock4-18]
          Length = 114

 Score = 51.6 bits (122), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 32/89 (35%), Positives = 47/89 (52%), Gaps = 5/89 (5%)

Query: 67  EWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVI 126
           E+   ++ G +D K+ ID  I   L +KW   R+ ++  SILR  V E+     +P  V 
Sbjct: 25  EFLESLVVGFVDNKEEIDAAIRQNL-KKWKLERISIVDRSILRVAVYEMKYMEEIPHNVT 83

Query: 127 ISEYVCIAHDFFYGDEP--KFINAVLDKV 153
           I+E + IA  F  GDE   +FIN VL  +
Sbjct: 84  INEAIEIAKTF--GDEESRRFINGVLSNI 110


>gi|270263549|ref|ZP_06191818.1| putative N-utilization protein B [Serratia odorifera 4Rx13]
 gi|270042433|gb|EFA15528.1| putative N-utilization protein B [Serratia odorifera 4Rx13]
          Length = 140

 Score = 51.6 bits (122), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 40/132 (30%), Positives = 65/132 (49%), Gaps = 13/132 (9%)

Query: 23  AVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQH 82
           AVQALY   +      ++      ++F   TE DV+ V    D+ +FR ++ GV      
Sbjct: 13  AVQALYSWQLSKNDIADV-----EHQFL--TEQDVKDV----DIAYFRELLSGVAVNAGL 61

Query: 83  IDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDE 142
           +D L++  L+ +     L  +  ++LR  + EL     VP +V I+E + +A  F   D 
Sbjct: 62  LDGLMAPFLSRQ--LEELGQVERAVLRIALFELKMREDVPYKVAINEAIELAKTFGAEDS 119

Query: 143 PKFINAVLDKVS 154
            KF+N VLDK +
Sbjct: 120 HKFVNGVLDKAA 131


>gi|312139563|ref|YP_004006899.1| transcriptional antiterminator factor nusb [Rhodococcus equi 103S]
 gi|325672553|ref|ZP_08152249.1| transcription antitermination protein NusB [Rhodococcus equi ATCC
           33707]
 gi|311888902|emb|CBH48215.1| transcriptional antiterminator factor NusB [Rhodococcus equi 103S]
 gi|325556430|gb|EGD26096.1| transcription antitermination protein NusB [Rhodococcus equi ATCC
           33707]
          Length = 167

 Score = 51.6 bits (122), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 28/82 (34%), Positives = 42/82 (51%), Gaps = 1/82 (1%)

Query: 72  IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
           ++ GV +    +D +I S L + W+  RL  +  +ILR  V EL     VP  V + E V
Sbjct: 59  VVQGVAENLDRLDQVIESHL-QDWTLDRLPAVDRAILRIAVWELFHATDVPPVVAVDEAV 117

Query: 132 CIAHDFFYGDEPKFINAVLDKV 153
            +A +    D P F+N VL +V
Sbjct: 118 ELAKELSTDDSPGFVNGVLGQV 139


>gi|294648615|ref|ZP_06726078.1| transcription antitermination protein NusB [Acinetobacter
           haemolyticus ATCC 19194]
 gi|292825491|gb|EFF84231.1| transcription antitermination protein NusB [Acinetobacter
           haemolyticus ATCC 19194]
          Length = 149

 Score = 51.6 bits (122), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 38/134 (28%), Positives = 63/134 (47%), Gaps = 13/134 (9%)

Query: 23  AVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQH 82
           AVQ +Y+  +      EI           +    VE+    VDL ++  ++  V+ + + 
Sbjct: 19  AVQGIYEWQMSQNPVHEI-----------EARTRVENAMHKVDLNYYHELLTQVVAQHEA 67

Query: 83  IDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDE 142
           +D L+   L  +   S LD +  + LR G  EL +   VP  V++ E + +A  F   D 
Sbjct: 68  LDELLVPVLDRE--LSALDGVELATLRLGAYELRDHLEVPYRVVLDEAIELAKHFGGADS 125

Query: 143 PKFINAVLDKVSRK 156
            K+IN VLD++S K
Sbjct: 126 HKYINGVLDRLSSK 139


>gi|227517900|ref|ZP_03947949.1| transcription antitermination protein NusB [Enterococcus faecalis
           TX0104]
 gi|227555087|ref|ZP_03985134.1| transcription antitermination protein NusB [Enterococcus faecalis
           HH22]
 gi|229546824|ref|ZP_04435549.1| transcription antitermination protein NusB [Enterococcus faecalis
           TX1322]
 gi|229548918|ref|ZP_04437643.1| transcription antitermination protein NusB [Enterococcus faecalis
           ATCC 29200]
 gi|293382527|ref|ZP_06628461.1| transcription antitermination factor NusB [Enterococcus faecalis
           R712]
 gi|293387873|ref|ZP_06632412.1| transcription antitermination factor NusB [Enterococcus faecalis
           S613]
 gi|307268058|ref|ZP_07549446.1| transcription antitermination factor NusB [Enterococcus faecalis
           TX4248]
 gi|307271988|ref|ZP_07553255.1| transcription antitermination factor NusB [Enterococcus faecalis
           TX0855]
 gi|307275459|ref|ZP_07556601.1| transcription antitermination factor NusB [Enterococcus faecalis
           TX2134]
 gi|307278973|ref|ZP_07560032.1| transcription antitermination factor NusB [Enterococcus faecalis
           TX0860]
 gi|307289420|ref|ZP_07569374.1| transcription antitermination factor NusB [Enterococcus faecalis
           TX0109]
 gi|307290060|ref|ZP_07569984.1| transcription antitermination factor NusB [Enterococcus faecalis
           TX0411]
 gi|312900448|ref|ZP_07759755.1| transcription antitermination factor NusB [Enterococcus faecalis
           TX0470]
 gi|312904540|ref|ZP_07763698.1| transcription antitermination factor NusB [Enterococcus faecalis
           TX0635]
 gi|312906870|ref|ZP_07765867.1| transcription antitermination factor NusB [Enterococcus faecalis
           DAPTO 512]
 gi|312952750|ref|ZP_07771612.1| transcription antitermination factor NusB [Enterococcus faecalis
           TX0102]
 gi|312978875|ref|ZP_07790601.1| transcription antitermination factor NusB [Enterococcus faecalis
           DAPTO 516]
 gi|227074654|gb|EEI12617.1| transcription antitermination protein NusB [Enterococcus faecalis
           TX0104]
 gi|227175755|gb|EEI56727.1| transcription antitermination protein NusB [Enterococcus faecalis
           HH22]
 gi|229305939|gb|EEN71935.1| transcription antitermination protein NusB [Enterococcus faecalis
           ATCC 29200]
 gi|229307989|gb|EEN73976.1| transcription antitermination protein NusB [Enterococcus faecalis
           TX1322]
 gi|291080075|gb|EFE17439.1| transcription antitermination factor NusB [Enterococcus faecalis
           R712]
 gi|291082720|gb|EFE19683.1| transcription antitermination factor NusB [Enterococcus faecalis
           S613]
 gi|306498902|gb|EFM68396.1| transcription antitermination factor NusB [Enterococcus faecalis
           TX0411]
 gi|306499675|gb|EFM69038.1| transcription antitermination factor NusB [Enterococcus faecalis
           TX0109]
 gi|306504360|gb|EFM73571.1| transcription antitermination factor NusB [Enterococcus faecalis
           TX0860]
 gi|306507847|gb|EFM76975.1| transcription antitermination factor NusB [Enterococcus faecalis
           TX2134]
 gi|306511335|gb|EFM80338.1| transcription antitermination factor NusB [Enterococcus faecalis
           TX0855]
 gi|306515699|gb|EFM84226.1| transcription antitermination factor NusB [Enterococcus faecalis
           TX4248]
 gi|310627124|gb|EFQ10407.1| transcription antitermination factor NusB [Enterococcus faecalis
           DAPTO 512]
 gi|310629266|gb|EFQ12549.1| transcription antitermination factor NusB [Enterococcus faecalis
           TX0102]
 gi|310632053|gb|EFQ15336.1| transcription antitermination factor NusB [Enterococcus faecalis
           TX0635]
 gi|311288312|gb|EFQ66868.1| transcription antitermination factor NusB [Enterococcus faecalis
           DAPTO 516]
 gi|311292424|gb|EFQ70980.1| transcription antitermination factor NusB [Enterococcus faecalis
           TX0470]
 gi|315026954|gb|EFT38886.1| transcription antitermination factor NusB [Enterococcus faecalis
           TX2137]
 gi|315029667|gb|EFT41599.1| transcription antitermination factor NusB [Enterococcus faecalis
           TX4000]
 gi|315034207|gb|EFT46139.1| transcription antitermination factor NusB [Enterococcus faecalis
           TX0027]
 gi|315144361|gb|EFT88377.1| transcription antitermination factor NusB [Enterococcus faecalis
           TX2141]
 gi|315147929|gb|EFT91945.1| transcription antitermination factor NusB [Enterococcus faecalis
           TX4244]
 gi|315149499|gb|EFT93515.1| transcription antitermination factor NusB [Enterococcus faecalis
           TX0012]
 gi|315153054|gb|EFT97070.1| transcription antitermination factor NusB [Enterococcus faecalis
           TX0031]
 gi|315156826|gb|EFU00843.1| transcription antitermination factor NusB [Enterococcus faecalis
           TX0043]
 gi|315157613|gb|EFU01630.1| transcription antitermination factor NusB [Enterococcus faecalis
           TX0312]
 gi|315162959|gb|EFU06976.1| transcription antitermination factor NusB [Enterococcus faecalis
           TX0645]
 gi|315165157|gb|EFU09174.1| transcription antitermination factor NusB [Enterococcus faecalis
           TX1302]
 gi|315168057|gb|EFU12074.1| transcription antitermination factor NusB [Enterococcus faecalis
           TX1341]
 gi|315171915|gb|EFU15932.1| transcription antitermination factor NusB [Enterococcus faecalis
           TX1342]
 gi|315173308|gb|EFU17325.1| transcription antitermination factor NusB [Enterococcus faecalis
           TX1346]
 gi|315574278|gb|EFU86469.1| transcription antitermination factor NusB [Enterococcus faecalis
           TX0309B]
 gi|315577406|gb|EFU89597.1| transcription antitermination factor NusB [Enterococcus faecalis
           TX0630]
 gi|315581567|gb|EFU93758.1| transcription antitermination factor NusB [Enterococcus faecalis
           TX0309A]
 gi|327534564|gb|AEA93398.1| transcription antitermination factor NusB [Enterococcus faecalis
           OG1RF]
          Length = 156

 Score = 51.6 bits (122), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 38/141 (26%), Positives = 65/141 (46%), Gaps = 11/141 (7%)

Query: 20  RLAAVQALYQIDIIGCSTTEIISEY----ETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           R  A+QAL+ +D     T +   +Y    +     ++   D+   YL +       ++ G
Sbjct: 18  REKALQALFPLDFNADLTKQDAIDYALAYDNREIVSEDGEDLVPTYLDL-------LVGG 70

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
           V  RK  +D +I++ L   WS  RL  I   ILR  + E++    VP  V ++E V ++ 
Sbjct: 71  VCSRKAELDEVITNHLGNNWSMQRLAKIDIVILRLAIFEMLYVSDVPNIVALNEAVELSK 130

Query: 136 DFFYGDEPKFINAVLDKVSRK 156
            +      KF+N VL  V ++
Sbjct: 131 KYSDDRSRKFVNGVLSNVMKE 151


>gi|220904887|ref|YP_002480199.1| NusB antitermination factor [Desulfovibrio desulfuricans subsp.
           desulfuricans str. ATCC 27774]
 gi|254772632|sp|B8J194|NUSB_DESDA RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|219869186|gb|ACL49521.1| NusB antitermination factor [Desulfovibrio desulfuricans subsp.
           desulfuricans str. ATCC 27774]
          Length = 164

 Score = 51.6 bits (122), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 39/148 (26%), Positives = 65/148 (43%), Gaps = 9/148 (6%)

Query: 11  KLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVD---LE 67
           K + RRG  R  A Q LY +      + E +    ++R   D     E   + V+     
Sbjct: 5   KNATRRG-ERELAFQVLYGLSFTPARSLEEL--RRSFRMSPDNLARSEESGVPVEACGFS 61

Query: 68  WFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVII 127
           W   ++ GV      +D  IS   +  W   R+  +  ++LR    EL+    VP +V I
Sbjct: 62  W--ELVEGVWSNSSALDETISR-FSHNWRVDRMGRVELTLLRLAAYELVFRADVPPKVAI 118

Query: 128 SEYVCIAHDFFYGDEPKFINAVLDKVSR 155
           +E + ++  F  G+   FIN +LD V++
Sbjct: 119 NEALELSRQFGEGNAKNFINGILDAVAK 146


>gi|29375559|ref|NP_814713.1| transcription antitermination protein NusB [Enterococcus faecalis
           V583]
 gi|256852630|ref|ZP_05558001.1| transcription antitermination protein NusB [Enterococcus faecalis
           T8]
 gi|39931895|sp|Q836W8|NUSB_ENTFA RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|29343020|gb|AAO80783.1| N utilization substance protein B [Enterococcus faecalis V583]
 gi|256711975|gb|EEU27012.1| transcription antitermination protein NusB [Enterococcus faecalis
           T8]
          Length = 154

 Score = 51.6 bits (122), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 38/141 (26%), Positives = 65/141 (46%), Gaps = 11/141 (7%)

Query: 20  RLAAVQALYQIDIIGCSTTEIISEY----ETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           R  A+QAL+ +D     T +   +Y    +     ++   D+   YL +       ++ G
Sbjct: 16  REKALQALFPLDFNADLTKQDAIDYALAYDNREIVSEDGEDLVPTYLDL-------LVGG 68

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
           V  RK  +D +I++ L   WS  RL  I   ILR  + E++    VP  V ++E V ++ 
Sbjct: 69  VCSRKAELDEVITNHLGNNWSMQRLAKIDIVILRLAIFEMLYVSDVPNIVALNEAVELSK 128

Query: 136 DFFYGDEPKFINAVLDKVSRK 156
            +      KF+N VL  V ++
Sbjct: 129 KYSDDRSRKFVNGVLSNVMKE 149


>gi|229916254|ref|YP_002884900.1| NusB antitermination factor [Exiguobacterium sp. AT1b]
 gi|259514838|sp|C4L3F7|NUSB_EXISA RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|229467683|gb|ACQ69455.1| NusB antitermination factor [Exiguobacterium sp. AT1b]
          Length = 128

 Score = 51.6 bits (122), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 42/145 (28%), Positives = 68/145 (46%), Gaps = 20/145 (13%)

Query: 15  RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74
           +R  AR  A+Q L+QI++      E I       F  D E   ES        ++  ++ 
Sbjct: 2   KRHEAREKAIQTLFQIEVSKLEVDEAIE------FALDGE---ESDP------FYEQLVT 46

Query: 75  GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134
           G ++  + ID L+   L + W   RL  +  +ILR    EL+   ++P  V I+E V +A
Sbjct: 47  GTLEHIEDIDALLVENL-KNWRLDRLGNVERTILRMATFELLYVETIPENVTINEAVELA 105

Query: 135 HDFFYGDEP--KFINAVLDKVSRKE 157
             F  GDE   K +N VL  + +++
Sbjct: 106 KSF--GDEEAGKLVNGVLGNIIKED 128


>gi|266618676|pdb|3IMQ|A Chain A, Crystal Structure Of The Nusb101-S10(Delta Loop) Complex
 gi|266618678|pdb|3IMQ|B Chain B, Crystal Structure Of The Nusb101-S10(Delta Loop) Complex
 gi|266618680|pdb|3IMQ|C Chain C, Crystal Structure Of The Nusb101-S10(Delta Loop) Complex
          Length = 141

 Score = 51.6 bits (122), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 40/132 (30%), Positives = 65/132 (49%), Gaps = 13/132 (9%)

Query: 23  AVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQH 82
           AVQALY   +      ++      Y+F A  E DV+ V    D+ +FR ++ GV     +
Sbjct: 15  AVQALYSWQLSQNDIADV-----EYQFLA--EQDVKDV----DVLYFRELLAGVATNTAY 63

Query: 83  IDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDE 142
           +D L+   L+       L  +  ++LR  + EL +   VP +V I+E + +A  F   + 
Sbjct: 64  LDGLMKPYLSR--LLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAENS 121

Query: 143 PKFINAVLDKVS 154
            KF+N VLDK +
Sbjct: 122 HKFVNGVLDKAA 133


>gi|193212152|ref|YP_001998105.1| NusB antitermination factor [Chlorobaculum parvum NCIB 8327]
 gi|238692614|sp|B3QLL5|NUSB_CHLP8 RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|193085629|gb|ACF10905.1| NusB antitermination factor [Chlorobaculum parvum NCIB 8327]
          Length = 164

 Score = 51.6 bits (122), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 36/142 (25%), Positives = 70/142 (49%), Gaps = 13/142 (9%)

Query: 13  SHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVI 72
           ++RR + R   +QALY +++    T    +   T     D             +++F  +
Sbjct: 3   TYRRQL-REKIIQALYTLELRDVDTDSATNWLLTKEMADDPNA----------MKFFNHL 51

Query: 73  IHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVC 132
           +  ++D ++ ID  I+   T  W  +R+ +I  +ILR  + E++ C  +P +V I+E + 
Sbjct: 52  MKSIIDHREEIDRHIAKH-TFNWDMNRIAIIDKNILRMALAEILYCEDIPPKVSINEAIE 110

Query: 133 IAHDFFYGDE-PKFINAVLDKV 153
           IA  F   ++  KF+N +LD +
Sbjct: 111 IAKKFNSTEKSSKFVNGILDAI 132


>gi|152966952|ref|YP_001362736.1| NusB antitermination factor [Kineococcus radiotolerans SRS30216]
 gi|189035892|sp|A6WCD3|NUSB_KINRD RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|151361469|gb|ABS04472.1| NusB antitermination factor [Kineococcus radiotolerans SRS30216]
          Length = 136

 Score = 51.6 bits (122), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 26/92 (28%), Positives = 51/92 (55%), Gaps = 1/92 (1%)

Query: 67  EWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVI 126
           E+   ++ GV++ +  ID ++S+  +  W   R+  +  ++LR G  E++    VP  V 
Sbjct: 42  EYAVTVVEGVVEHQARIDEVLSTY-SMAWPLDRMPAVDRALLRIGTWEVLYAADVPDHVA 100

Query: 127 ISEYVCIAHDFFYGDEPKFINAVLDKVSRKEE 158
           +SE V IA +    + PKF+N +L +++  +E
Sbjct: 101 VSEAVEIAQELSTDESPKFVNGLLARIAELKE 132


>gi|332530152|ref|ZP_08406101.1| NusB antitermination factor [Hylemonella gracilis ATCC 19624]
 gi|332040422|gb|EGI76799.1| NusB antitermination factor [Hylemonella gracilis ATCC 19624]
          Length = 187

 Score = 51.6 bits (122), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 43/149 (28%), Positives = 71/149 (47%), Gaps = 14/149 (9%)

Query: 6   NKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVD 65
           NK    LS R   +R  A+QALYQ  ++G + T  I       F  D      + +   D
Sbjct: 35  NKPSRALSGR-SRSREFALQALYQ-HLVGRNATADIDA-----FTRDL-----TGFHKAD 82

Query: 66  LEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEV 125
              +  ++HG ++  + +D LI   L  K   + +  I  +I+  G  E   C  VP  V
Sbjct: 83  AAHYDALLHGCVNEAEALDRLILPLLDRK--LAEISPIERAIMWMGAYEFQHCVDVPWRV 140

Query: 126 IISEYVCIAHDFFYGDEPKFINAVLDKVS 154
           +++EY+ +A  F   D  K++NAVL+ ++
Sbjct: 141 VLNEYIELAKSFGGTDGHKYVNAVLNGLA 169


>gi|255971431|ref|ZP_05422017.1| antitermination protein NusB [Enterococcus faecalis T1]
 gi|255974044|ref|ZP_05424630.1| antitermination protein NusB [Enterococcus faecalis T2]
 gi|256617900|ref|ZP_05474746.1| antitermination protein NusB [Enterococcus faecalis ATCC 4200]
 gi|256761733|ref|ZP_05502313.1| antitermination protein NusB [Enterococcus faecalis T3]
 gi|256957069|ref|ZP_05561240.1| antitermination protein NusB [Enterococcus faecalis DS5]
 gi|256960159|ref|ZP_05564330.1| antitermination protein NusB [Enterococcus faecalis Merz96]
 gi|256962598|ref|ZP_05566769.1| antitermination protein NusB [Enterococcus faecalis HIP11704]
 gi|257077865|ref|ZP_05572226.1| antitermination protein NusB [Enterococcus faecalis JH1]
 gi|257081230|ref|ZP_05575591.1| antitermination protein NusB [Enterococcus faecalis E1Sol]
 gi|257083886|ref|ZP_05578247.1| antitermination protein NusB [Enterococcus faecalis Fly1]
 gi|257086336|ref|ZP_05580697.1| antitermination protein NusB [Enterococcus faecalis D6]
 gi|257089386|ref|ZP_05583747.1| antitermination protein nusB [Enterococcus faecalis CH188]
 gi|257415595|ref|ZP_05592589.1| antitermination protein NusB [Enterococcus faecalis AR01/DG]
 gi|257418568|ref|ZP_05595562.1| transcription antitermination protein nusB [Enterococcus faecalis
           T11]
 gi|257421226|ref|ZP_05598216.1| transcription antitermination protein nusB [Enterococcus faecalis
           X98]
 gi|294780567|ref|ZP_06745930.1| transcription antitermination factor NusB [Enterococcus faecalis
           PC1.1]
 gi|300859628|ref|ZP_07105716.1| transcription antitermination factor NusB [Enterococcus faecalis
           TUSoD Ef11]
 gi|255962449|gb|EET94925.1| antitermination protein NusB [Enterococcus faecalis T1]
 gi|255966916|gb|EET97538.1| antitermination protein NusB [Enterococcus faecalis T2]
 gi|256597427|gb|EEU16603.1| antitermination protein NusB [Enterococcus faecalis ATCC 4200]
 gi|256682984|gb|EEU22679.1| antitermination protein NusB [Enterococcus faecalis T3]
 gi|256947565|gb|EEU64197.1| antitermination protein NusB [Enterococcus faecalis DS5]
 gi|256950655|gb|EEU67287.1| antitermination protein NusB [Enterococcus faecalis Merz96]
 gi|256953094|gb|EEU69726.1| antitermination protein NusB [Enterococcus faecalis HIP11704]
 gi|256985895|gb|EEU73197.1| antitermination protein NusB [Enterococcus faecalis JH1]
 gi|256989260|gb|EEU76562.1| antitermination protein NusB [Enterococcus faecalis E1Sol]
 gi|256991916|gb|EEU79218.1| antitermination protein NusB [Enterococcus faecalis Fly1]
 gi|256994366|gb|EEU81668.1| antitermination protein NusB [Enterococcus faecalis D6]
 gi|256998198|gb|EEU84718.1| antitermination protein nusB [Enterococcus faecalis CH188]
 gi|257157423|gb|EEU87383.1| antitermination protein NusB [Enterococcus faecalis ARO1/DG]
 gi|257160396|gb|EEU90356.1| transcription antitermination protein nusB [Enterococcus faecalis
           T11]
 gi|257163050|gb|EEU93010.1| transcription antitermination protein nusB [Enterococcus faecalis
           X98]
 gi|294452394|gb|EFG20833.1| transcription antitermination factor NusB [Enterococcus faecalis
           PC1.1]
 gi|295113845|emb|CBL32482.1| transcription antitermination factor NusB [Enterococcus sp. 7L76]
 gi|300850446|gb|EFK78195.1| transcription antitermination factor NusB [Enterococcus faecalis
           TUSoD Ef11]
 gi|323480217|gb|ADX79656.1| transcription antitermination factor NusB [Enterococcus faecalis
           62]
          Length = 150

 Score = 51.6 bits (122), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 38/141 (26%), Positives = 65/141 (46%), Gaps = 11/141 (7%)

Query: 20  RLAAVQALYQIDIIGCSTTEIISEY----ETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           R  A+QAL+ +D     T +   +Y    +     ++   D+   YL +       ++ G
Sbjct: 12  REKALQALFPLDFNADLTKQDAIDYALAYDNREIVSEDGEDLVPTYLDL-------LVGG 64

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
           V  RK  +D +I++ L   WS  RL  I   ILR  + E++    VP  V ++E V ++ 
Sbjct: 65  VCSRKAELDEVITNHLGNNWSMQRLAKIDIVILRLAIFEMLYVSDVPNIVALNEAVELSK 124

Query: 136 DFFYGDEPKFINAVLDKVSRK 156
            +      KF+N VL  V ++
Sbjct: 125 KYSDDRSRKFVNGVLSNVMKE 145


>gi|213966115|ref|ZP_03394302.1| transcription antitermination protein NusB [Corynebacterium
           amycolatum SK46]
 gi|213951213|gb|EEB62608.1| transcription antitermination protein NusB [Corynebacterium
           amycolatum SK46]
          Length = 234

 Score = 51.6 bits (122), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 36/107 (33%), Positives = 49/107 (45%), Gaps = 5/107 (4%)

Query: 45  ETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMIL 104
           E      + +LDV  +      E+   I+ GV      ID  ISS LTE+W   RL  + 
Sbjct: 58  ERLEMVRNPDLDVNPI-----AEYTEQIVRGVAAEIIGIDSTISSYLTEEWPLRRLPAVD 112

Query: 105 CSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLD 151
            +ILR    EL     VP  V + E V +A ++       +INAVLD
Sbjct: 113 RAILRLSTWELFYNSDVPPRVAVVEGVELASEYSTDVAAPYINAVLD 159


>gi|194335654|ref|YP_002017448.1| NusB antitermination factor [Pelodictyon phaeoclathratiforme BU-1]
 gi|238693383|sp|B4SCZ7|NUSB_PELPB RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|194308131|gb|ACF42831.1| NusB antitermination factor [Pelodictyon phaeoclathratiforme BU-1]
          Length = 171

 Score = 51.6 bits (122), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 42/154 (27%), Positives = 72/154 (46%), Gaps = 15/154 (9%)

Query: 13  SHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVI 72
           ++RR I R   +QALY I+I             T    AD             +++F ++
Sbjct: 3   TYRRQI-REKILQALYTIEIRDTDIDSAAGWLLTEEILADPNA----------MKFFNML 51

Query: 73  IHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVC 132
           +  + +  + ID  I    T  W  SR+ +I  +I+R  + E++ C  +P +V I+E + 
Sbjct: 52  LKNIKEHMEEIDRYIVKH-TFNWDMSRIAIIDKNIIRMALTEILYCEDIPPKVSINEAIE 110

Query: 133 IAHDFFYGDE-PKFINAVLDKVSRKEEIKRSGCV 165
           IA  F   D+  KF+N +LD +    ++K  G V
Sbjct: 111 IAKKFNSTDKSSKFVNGILDAIFN--DLKNEGKV 142


>gi|153208973|ref|ZP_01947179.1| transcription antitermination factor NusB [Coxiella burnetii 'MSU
           Goat Q177']
 gi|165924151|ref|ZP_02219983.1| transcription antitermination factor NusB [Coxiella burnetii RSA
           334]
 gi|212219014|ref|YP_002305801.1| transcription antitermination protein NusB [Coxiella burnetii
           CbuK_Q154]
 gi|238055349|sp|B6J8Q7|NUSB_COXB1 RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|120575573|gb|EAX32197.1| transcription antitermination factor NusB [Coxiella burnetii 'MSU
           Goat Q177']
 gi|165916410|gb|EDR35014.1| transcription antitermination factor NusB [Coxiella burnetii RSA
           334]
 gi|212013276|gb|ACJ20656.1| utilization substance protein B [Coxiella burnetii CbuK_Q154]
          Length = 138

 Score = 51.6 bits (122), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 40/139 (28%), Positives = 68/139 (48%), Gaps = 13/139 (9%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           R  AR  A+QALYQ          +IS++      +DTE+            +F+ ++ G
Sbjct: 6   RHNARRYALQALYQWFFCETKPDALISQFMEEHDLSDTEV-----------AYFKEVVTG 54

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
            +     ID L+++ L  K   S L+ +  S+LR  + EL+    VP +V+I E + +  
Sbjct: 55  TIQHVAIIDELMTAHLDRK--ISALNPVELSVLRLSIYELLHRKEVPYKVVIDEALELVK 112

Query: 136 DFFYGDEPKFINAVLDKVS 154
           +F      K++NA+LD +S
Sbjct: 113 EFGAEAGHKYVNAILDVLS 131


>gi|225420435|ref|ZP_03762738.1| hypothetical protein CLOSTASPAR_06780 [Clostridium asparagiforme
           DSM 15981]
 gi|225040922|gb|EEG51168.1| hypothetical protein CLOSTASPAR_06780 [Clostridium asparagiforme
           DSM 15981]
          Length = 197

 Score = 51.6 bits (122), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 41/151 (27%), Positives = 65/151 (43%), Gaps = 13/151 (8%)

Query: 27  LYQIDIIGCSTTEIISEYETYRFCADTELDVES----VYLHV------DLEWFRVIIHGV 76
           L+  D    S  E+  + + Y F A  E DV+       LH       D  +    + G+
Sbjct: 14  LFSADFY-PSAEEVKEQLKQY-FNAPEEDDVDPKGDVTILHKVEIKEEDSRYLEKRVAGI 71

Query: 77  MDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHD 136
           MD+   ID  I+      W   R+  +  +ILR  + E+    S+P +V I+E V +A  
Sbjct: 72  MDKIPEIDGQINEVAA-GWRTKRMGKVELTILRLALFEMKYDDSIPEKVAINEAVELAKK 130

Query: 137 FFYGDEPKFINAVLDKVSRKEEIKRSGCVSA 167
           F   + P F+N +L K + K   +  G   A
Sbjct: 131 FGGDESPSFVNGILAKFAGKAAGRTGGEAEA 161


>gi|260578799|ref|ZP_05846706.1| N utilization substance protein B family protein (protein NusB)
           [Corynebacterium jeikeium ATCC 43734]
 gi|258603097|gb|EEW16367.1| N utilization substance protein B family protein (protein NusB)
           [Corynebacterium jeikeium ATCC 43734]
          Length = 205

 Score = 51.6 bits (122), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 42/155 (27%), Positives = 69/155 (44%), Gaps = 11/155 (7%)

Query: 5   DNKKDLKLSHRRG----IARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESV 60
           DNK     S +R      AR  AV  L++ +       EI+ E        D+   V+ V
Sbjct: 8   DNKAAKAASFKRHGSRYKARRRAVDILFEAEFRDIDPVEIVEE--RISLAKDSANQVKPV 65

Query: 61  YLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHS 120
                 E+ + I+ GV      +D  I+  L+  W   RL  +  ++LR    EL     
Sbjct: 66  P-----EYTQQIVPGVATNLDALDEAIALHLSSDWQLDRLPAVDRAVLRVAAWELKFNDD 120

Query: 121 VPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSR 155
           VP +V + E V +A ++ +   P +I+AVLD +++
Sbjct: 121 VPPQVAVVEGVELASEYSHDKAPSYIHAVLDGINK 155


>gi|307636683|gb|ADN79133.1| Transcription termination protein [Helicobacter pylori 908]
 gi|325995267|gb|ADZ50672.1| Transcription termination protein [Helicobacter pylori 2018]
 gi|325996871|gb|ADZ49079.1| Transcription termination protein [Helicobacter pylori 2017]
          Length = 138

 Score = 51.6 bits (122), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 30/85 (35%), Positives = 47/85 (55%), Gaps = 2/85 (2%)

Query: 72  IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
           + +GV++R   ID LI   L + W F RL  +  +ILR G  E I        +II+E +
Sbjct: 49  LFNGVLERINEIDALIEPHLKD-WDFKRLGSMEKAILRLGAYE-IGFTPTQNPIIINECI 106

Query: 132 CIAHDFFYGDEPKFINAVLDKVSRK 156
            +   +   + PKF+NA+LD +S+K
Sbjct: 107 ELGKLYAEPNTPKFLNAILDSLSKK 131


>gi|324998653|ref|ZP_08119765.1| NusB antitermination factor [Pseudonocardia sp. P1]
          Length = 139

 Score = 51.6 bits (122), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 38/139 (27%), Positives = 65/139 (46%), Gaps = 13/139 (9%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           R  AR  A+  L++ +  G +  E++    T R   D    V+        E+   ++ G
Sbjct: 4   RTKARKRALDILFEAEARGEAPLEVL----TARRETDDAPPVQ--------EYAARLVEG 51

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
           V   ++ ID L++    E W+  R+  +   +LR GV EL+    V   V I+E V +A 
Sbjct: 52  VATHRERIDQLLAEH-AEGWTVDRMPAVDRGLLRIGVYELLWVDDVDDPVAITEAVELAR 110

Query: 136 DFFYGDEPKFINAVLDKVS 154
                D P+++N VL ++S
Sbjct: 111 TLSTDDSPRYVNGVLGQIS 129


>gi|254455633|ref|ZP_05069062.1| antitermination protein NusB [Candidatus Pelagibacter sp. HTCC7211]
 gi|207082635|gb|EDZ60061.1| antitermination protein NusB [Candidatus Pelagibacter sp. HTCC7211]
          Length = 134

 Score = 51.6 bits (122), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 28/108 (25%), Positives = 55/108 (50%), Gaps = 3/108 (2%)

Query: 49  FCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSIL 108
           +  D  LD      H   ++ + I+ G ++R   I   + + L  ++ F  LD +  +IL
Sbjct: 24  YNEDNNLDFPK---HRFKKFIKDIVLGTIERNDLILSELDTKLGNEFVFENLDKVFQTIL 80

Query: 109 RAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRK 156
           +A   E +   +V + +II EY+  ++ F    + K++NA+LD + +K
Sbjct: 81  KAATYEFLYKPNVSINIIIKEYLNSSNFFLENSQTKYLNALLDNIGKK 128


>gi|258627344|ref|ZP_05722128.1| N utilization substance protein B [Vibrio mimicus VM603]
 gi|262166342|ref|ZP_06034079.1| transcription termination protein NusB [Vibrio mimicus VM223]
 gi|258580382|gb|EEW05347.1| N utilization substance protein B [Vibrio mimicus VM603]
 gi|262026058|gb|EEY44726.1| transcription termination protein NusB [Vibrio mimicus VM223]
          Length = 152

 Score = 51.6 bits (122), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 43/153 (28%), Positives = 72/153 (47%), Gaps = 16/153 (10%)

Query: 10  LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVES--------VY 61
           +K + RR  AR  A+QA+Y   I    T E ++  E  +F    + D E           
Sbjct: 1   MKPAARRN-ARQFALQAIYSWQI----TKENVATIEE-QFLTSGKYDEEEHRAAEPALAA 54

Query: 62  LHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSV 121
              D+ +FR ++ GV+     +D  +   ++       LDM+  ++LR  + E+     V
Sbjct: 55  PETDVSYFRDLLAGVVLNHTELDSKLRPFVSR--PMQDLDMMELALLRLAMYEMTRREDV 112

Query: 122 PVEVIISEYVCIAHDFFYGDEPKFINAVLDKVS 154
           P +V+I+E + +A  F   D  KF+N VLDK +
Sbjct: 113 PYKVVINEAIELAKVFAAEDSHKFVNGVLDKAA 145


>gi|182683397|ref|YP_001835144.1| transcription antitermination protein NusB [Streptococcus
           pneumoniae CGSP14]
 gi|182628731|gb|ACB89679.1| transcription antitermination protein NusB [Streptococcus
           pneumoniae CGSP14]
          Length = 146

 Score = 51.6 bits (122), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 31/99 (31%), Positives = 51/99 (51%), Gaps = 2/99 (2%)

Query: 61  YLHVDLEWFRV-IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECH 119
           Y  V L  F + ++ GV  +K+ +D  I+  L   W+  RL ++  ++LR GV E I   
Sbjct: 49  YTDVQLPAFLIDLVSGVQAKKEELDKQITQHLKAGWTIERLTLVERNLLRLGVFE-ITSF 107

Query: 120 SVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEE 158
             P  V I+E + +A DF      +FIN +L +   +E+
Sbjct: 108 DTPQLVAINEAIELAKDFSDQKSARFINGLLSQFVTEEQ 146


>gi|170693624|ref|ZP_02884782.1| NusB antitermination factor [Burkholderia graminis C4D1M]
 gi|170141406|gb|EDT09576.1| NusB antitermination factor [Burkholderia graminis C4D1M]
          Length = 144

 Score = 51.6 bits (122), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 42/147 (28%), Positives = 65/147 (44%), Gaps = 15/147 (10%)

Query: 10  LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF 69
           +K + RR  +R  A Q LYQ  + G    EI           D +L     +   D E  
Sbjct: 1   MKSARRR--SRELATQGLYQWLLSGSPGGEI-----------DAQLRGAQGFDKADHEHL 47

Query: 70  RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISE 129
             I+HGV+   + +   I+ CL       +L  +  ++L     EL     +P  V+I+E
Sbjct: 48  DAILHGVIRDSEALSADIAPCLDR--PIEQLSPVERAVLLVAAFELKNHVDIPYRVVINE 105

Query: 130 YVCIAHDFFYGDEPKFINAVLDKVSRK 156
            V +A  F   D  K++N VLDK++ K
Sbjct: 106 AVELAKTFGGVDGYKYVNGVLDKLAAK 132


>gi|15642265|ref|NP_231898.1| transcription antitermination protein NusB [Vibrio cholerae O1
           biovar El Tor str. N16961]
 gi|121586175|ref|ZP_01675966.1| N utilization substance protein B [Vibrio cholerae 2740-80]
 gi|121729760|ref|ZP_01682199.1| N utilization substance protein B [Vibrio cholerae V52]
 gi|147673228|ref|YP_001217781.1| transcription antitermination protein NusB [Vibrio cholerae O395]
 gi|153217373|ref|ZP_01951124.1| N utilization substance protein B [Vibrio cholerae 1587]
 gi|153803017|ref|ZP_01957603.1| N utilization substance protein B [Vibrio cholerae MZO-3]
 gi|153824256|ref|ZP_01976923.1| N utilization substance protein B [Vibrio cholerae B33]
 gi|153828248|ref|ZP_01980915.1| N utilization substance protein B [Vibrio cholerae 623-39]
 gi|227082391|ref|YP_002810942.1| N utilization substance protein B [Vibrio cholerae M66-2]
 gi|229507660|ref|ZP_04397165.1| transcription termination protein NusB [Vibrio cholerae BX 330286]
 gi|229512145|ref|ZP_04401624.1| transcription termination protein NusB [Vibrio cholerae B33]
 gi|229513908|ref|ZP_04403370.1| transcription termination protein NusB [Vibrio cholerae TMA 21]
 gi|229519280|ref|ZP_04408723.1| transcription termination protein NusB [Vibrio cholerae RC9]
 gi|229522212|ref|ZP_04411629.1| transcription termination protein NusB [Vibrio cholerae TM
           11079-80]
 gi|229528732|ref|ZP_04418122.1| transcription termination protein NusB [Vibrio cholerae 12129(1)]
 gi|229607164|ref|YP_002877812.1| transcription antitermination protein NusB [Vibrio cholerae
           MJ-1236]
 gi|254286062|ref|ZP_04961023.1| N utilization substance protein B [Vibrio cholerae AM-19226]
 gi|254849396|ref|ZP_05238746.1| transcription antitermination protein NusB [Vibrio cholerae MO10]
 gi|255747039|ref|ZP_05420984.1| transcription termination protein NusB [Vibrio cholera CIRS 101]
 gi|262161417|ref|ZP_06030527.1| transcription termination protein NusB [Vibrio cholerae INDRE 91/1]
 gi|262168266|ref|ZP_06035963.1| transcription termination protein NusB [Vibrio cholerae RC27]
 gi|262190236|ref|ZP_06048510.1| transcription termination protein NusB [Vibrio cholerae CT 5369-93]
 gi|297580910|ref|ZP_06942835.1| transcription antitermination protein NusB [Vibrio cholerae RC385]
 gi|298500359|ref|ZP_07010164.1| transcription antitermination factor NusB [Vibrio cholerae MAK 757]
 gi|22095970|sp|Q9KPU5|NUSB_VIBCH RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|172047603|sp|A5F5Z6|NUSB_VIBC3 RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|254772665|sp|C3LQ39|NUSB_VIBCM RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|9656829|gb|AAF95411.1| N utilization substance protein B [Vibrio cholerae O1 biovar El Tor
           str. N16961]
 gi|121549587|gb|EAX59611.1| N utilization substance protein B [Vibrio cholerae 2740-80]
 gi|121628511|gb|EAX60997.1| N utilization substance protein B [Vibrio cholerae V52]
 gi|124113619|gb|EAY32439.1| N utilization substance protein B [Vibrio cholerae 1587]
 gi|124121460|gb|EAY40203.1| N utilization substance protein B [Vibrio cholerae MZO-3]
 gi|126518222|gb|EAZ75447.1| N utilization substance protein B [Vibrio cholerae B33]
 gi|146315111|gb|ABQ19650.1| N utilization substance protein B [Vibrio cholerae O395]
 gi|148876337|gb|EDL74472.1| N utilization substance protein B [Vibrio cholerae 623-39]
 gi|150423972|gb|EDN15912.1| N utilization substance protein B [Vibrio cholerae AM-19226]
 gi|227010279|gb|ACP06491.1| N utilization substance protein B [Vibrio cholerae M66-2]
 gi|227014163|gb|ACP10373.1| N utilization substance protein B [Vibrio cholerae O395]
 gi|229332506|gb|EEN97992.1| transcription termination protein NusB [Vibrio cholerae 12129(1)]
 gi|229341137|gb|EEO06142.1| transcription termination protein NusB [Vibrio cholerae TM
           11079-80]
 gi|229343969|gb|EEO08944.1| transcription termination protein NusB [Vibrio cholerae RC9]
 gi|229349089|gb|EEO14046.1| transcription termination protein NusB [Vibrio cholerae TMA 21]
 gi|229352110|gb|EEO17051.1| transcription termination protein NusB [Vibrio cholerae B33]
 gi|229355165|gb|EEO20086.1| transcription termination protein NusB [Vibrio cholerae BX 330286]
 gi|229369819|gb|ACQ60242.1| transcription termination protein NusB [Vibrio cholerae MJ-1236]
 gi|254845101|gb|EET23515.1| transcription antitermination protein NusB [Vibrio cholerae MO10]
 gi|255735441|gb|EET90841.1| transcription termination protein NusB [Vibrio cholera CIRS 101]
 gi|262023158|gb|EEY41862.1| transcription termination protein NusB [Vibrio cholerae RC27]
 gi|262028728|gb|EEY47382.1| transcription termination protein NusB [Vibrio cholerae INDRE 91/1]
 gi|262033881|gb|EEY52347.1| transcription termination protein NusB [Vibrio cholerae CT 5369-93]
 gi|297534736|gb|EFH73572.1| transcription antitermination protein NusB [Vibrio cholerae RC385]
 gi|297541052|gb|EFH77106.1| transcription antitermination factor NusB [Vibrio cholerae MAK 757]
 gi|327484782|gb|AEA79189.1| Transcription termination protein NusB [Vibrio cholerae LMA3894-4]
          Length = 156

 Score = 51.6 bits (122), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 43/153 (28%), Positives = 72/153 (47%), Gaps = 16/153 (10%)

Query: 10  LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVES--------VY 61
           +K + RR  AR  A+QA+Y   I    T E ++  E  +F    + D E           
Sbjct: 5   VKPAARRN-ARQFALQAIYSWQI----TKENVATIEE-QFLTSGKYDEEEHRAAEPALAA 58

Query: 62  LHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSV 121
              D+ +FR ++ GV+     +D  +   ++       LDM+  ++LR  + E+     V
Sbjct: 59  PETDVSYFRDLLAGVVLNHNELDSKLRPFVSR--PMQDLDMMELALLRLAMYEMTRREDV 116

Query: 122 PVEVIISEYVCIAHDFFYGDEPKFINAVLDKVS 154
           P +V+I+E + +A  F   D  KF+N VLDK +
Sbjct: 117 PYKVVINEAIELAKVFAAEDSHKFVNGVLDKAA 149


>gi|68536104|ref|YP_250809.1| transcription antitermination protein NusB [Corynebacterium
           jeikeium K411]
 gi|119390762|sp|Q4JVG6|NUSB_CORJK RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|68263703|emb|CAI37191.1| N utilization substance protein B [Corynebacterium jeikeium K411]
          Length = 202

 Score = 51.6 bits (122), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 42/155 (27%), Positives = 69/155 (44%), Gaps = 11/155 (7%)

Query: 5   DNKKDLKLSHRRG----IARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESV 60
           DNK     S +R      AR  AV  L++ +       EI+ E        D+   V+ V
Sbjct: 8   DNKAAKAASFKRHGSRYKARRRAVDILFEAEFRDIDPVEIVEE--RISLAKDSANQVKPV 65

Query: 61  YLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHS 120
                 E+ + I+ GV      +D  I+  L+  W   RL  +  ++LR    EL     
Sbjct: 66  P-----EYTQQIVPGVATNLDALDEAIALHLSSDWQLDRLPAVDRAVLRVAAWELKFNDD 120

Query: 121 VPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSR 155
           VP +V + E V +A ++ +   P +I+AVLD +++
Sbjct: 121 VPPQVAVVEGVELASEYSHDKAPSYIHAVLDGINK 155


>gi|293392569|ref|ZP_06636889.1| transcription termination/antitermination factor NusB [Serratia
           odorifera DSM 4582]
 gi|291424971|gb|EFE98180.1| transcription termination/antitermination factor NusB [Serratia
           odorifera DSM 4582]
          Length = 117

 Score = 51.6 bits (122), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 33/102 (32%), Positives = 53/102 (51%), Gaps = 6/102 (5%)

Query: 53  TELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGV 112
           TE DV+ V    D+ +FR ++ GV      +D L++  L+ +     L  +  ++LR  +
Sbjct: 15  TEQDVKDV----DIAYFRELLSGVAVNAGTLDALMAPYLSRQ--LEELGQVEKAVLRIAL 68

Query: 113 LELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVS 154
            EL     VP +V I+E + +A  F   D  KF+N VLDK +
Sbjct: 69  FELKMREDVPYKVAINEAIELAKTFGAEDSHKFVNGVLDKAA 110


>gi|268608467|ref|ZP_06142194.1| transcription termination factor [Ruminococcus flavefaciens FD-1]
          Length = 138

 Score = 51.2 bits (121), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 27/93 (29%), Positives = 51/93 (54%), Gaps = 1/93 (1%)

Query: 70  RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISE 129
           + I+ G +   + +D +I+   ++  S SR+  +  +ILR  + E +   + P+   ISE
Sbjct: 44  KKIVEGTLAHAEELDSIIAGY-SKSRSLSRISKLNIAILRIAIYESLYDDNTPMNAAISE 102

Query: 130 YVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRS 162
            + +A+ + Y ++ KFIN VL   SR ++ K S
Sbjct: 103 AINLANTYSYNEDSKFINGVLGAFSRDQKQKES 135


>gi|237743358|ref|ZP_04573839.1| transcription antitermination protein NusB [Fusobacterium sp. 7_1]
 gi|229433137|gb|EEO43349.1| transcription antitermination protein NusB [Fusobacterium sp. 7_1]
          Length = 157

 Score = 51.2 bits (121), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 39/150 (26%), Positives = 76/150 (50%), Gaps = 12/150 (8%)

Query: 18  IARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVM 77
           +AR    + ++  ++ G S+ E+  ++  Y    D E    +      LE+ +  I+G++
Sbjct: 18  LAREEVFKLVFGAELTGSSSDELKQDFSIY-LQNDEEFI--NALSEKQLEFIKNSINGIV 74

Query: 78  DRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDF 137
           +   +I  +I    T+ W++ R+ +I  S+L  G  E +   + P+EVI +E V +A + 
Sbjct: 75  ENYDNIKDVIKKN-TQNWTYERIGVIERSLLIVGTYEFL-IKNTPIEVIANEIVELAKE- 131

Query: 138 FYGDEP--KFINAVLDKVSRKEEIKRSGCV 165
            YG+E   +FIN +L  +   E+ K  G +
Sbjct: 132 -YGNEKSYEFINGILANI---EKAKNKGTI 157


>gi|32473208|ref|NP_866202.1| transcription antitermination protein NusB [Rhodopirellula baltica
           SH 1]
 gi|39931772|sp|Q7USA9|NUSB_RHOBA RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|32397887|emb|CAD73888.1| probable N utilization substance protein B homolog [Rhodopirellula
           baltica SH 1]
 gi|327540459|gb|EGF27044.1| transcription antitermination protein NusB [Rhodopirellula baltica
           WH47]
          Length = 145

 Score = 51.2 bits (121), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 25/82 (30%), Positives = 46/82 (56%), Gaps = 2/82 (2%)

Query: 72  IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
           ++ G M R+  ID  ++  L+  W+  R+ +   ++LR G  E++     P +V ISE +
Sbjct: 54  LLDGTMARRDDIDAKLTK-LSTNWALHRMPVTDRNVLRLGAYEIL-YSGTPGQVAISEAL 111

Query: 132 CIAHDFFYGDEPKFINAVLDKV 153
            +A  +   + P+FIN VLD++
Sbjct: 112 TLAKRYGGENSPRFINGVLDRL 133


>gi|332364657|gb|EGJ42426.1| N utilization substance protein B [Streptococcus sanguinis SK1059]
          Length = 143

 Score = 51.2 bits (121), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 43/150 (28%), Positives = 73/150 (48%), Gaps = 19/150 (12%)

Query: 9   DLKLSHRRGIARLAAVQAL----YQIDII-GCSTTEIISEYETYRFCADTELDVESVYLH 63
           D+ L  RRG+ R  A QAL    Y+ D++  C  +        Y +  D E D  +    
Sbjct: 3   DILLESRRGL-RQRAFQALMSLEYEGDLVEACRFS--------YSYDKDEEADKAA---E 50

Query: 64  VDLEWFRV-IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVP 122
            D+  F + ++ GV+  K  +D  I+  L + W+  RL ++  +ILR G+ E+ E  + P
Sbjct: 51  ADIPAFLLNLVSGVVQSKDDLDKKIAQHLKKGWTVDRLTLVEKNILRLGIFEITEFDT-P 109

Query: 123 VEVIISEYVCIAHDFFYGDEPKFINAVLDK 152
             V ++E + ++  F      KFIN +L +
Sbjct: 110 QLVAVNEAIELSKQFSDEKSSKFINGILSQ 139


>gi|226953323|ref|ZP_03823787.1| transcription antitermination protein NusB [Acinetobacter sp. ATCC
           27244]
 gi|262373826|ref|ZP_06067104.1| transcription antitermination factor NusB [Acinetobacter junii
           SH205]
 gi|226835949|gb|EEH68332.1| transcription antitermination protein NusB [Acinetobacter sp. ATCC
           27244]
 gi|262311579|gb|EEY92665.1| transcription antitermination factor NusB [Acinetobacter junii
           SH205]
          Length = 149

 Score = 51.2 bits (121), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 32/100 (32%), Positives = 53/100 (53%), Gaps = 2/100 (2%)

Query: 57  VESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELI 116
           VE+    VDL ++  ++  V+ + + +D L+   L  +   S LD +  + LR G  EL 
Sbjct: 42  VENAMHKVDLNYYHELLTQVVAQHEALDELLIPVLDRE--LSALDGVELATLRLGAYELR 99

Query: 117 ECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRK 156
           +   VP  V++ E + +A  F   D  K+IN VLD++S K
Sbjct: 100 DHLEVPYRVVLDEAIELAKHFGGADSHKYINGVLDRLSSK 139


>gi|212702193|ref|ZP_03310321.1| hypothetical protein DESPIG_00204 [Desulfovibrio piger ATCC 29098]
 gi|212674398|gb|EEB34881.1| hypothetical protein DESPIG_00204 [Desulfovibrio piger ATCC 29098]
          Length = 157

 Score = 51.2 bits (121), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 40/157 (25%), Positives = 69/157 (43%), Gaps = 10/157 (6%)

Query: 11  KLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFR 70
           K + RRG  R  A Q LY +     ++ E +     +    D + + E   L     W  
Sbjct: 5   KSASRRG-ERAQAFQVLYGLSFADATSLEDV--RRAFLQSPDHQ-ESEEGELPSGFSW-- 58

Query: 71  VIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEY 130
            ++ GV  R+  +D  IS   +  W   R+  +  ++LR  + EL+    VP +V I+E 
Sbjct: 59  DLVQGVWSRRDELDKTISR-FSRNWRVDRMGRVELTLLRLAMYELLYRQDVPAKVAINEA 117

Query: 131 VCIAHDFFYGDEPKFINAVLDKVSRKEEIKRSGCVSA 167
           + +   F   +   F+N +LD  ++  E    G +SA
Sbjct: 118 LELTRQFGEDNATSFVNGILDAAAKALE---KGSLSA 151


>gi|295093397|emb|CBK82488.1| transcription antitermination factor NusB [Coprococcus sp. ART55/1]
          Length = 159

 Score = 51.2 bits (121), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 33/103 (32%), Positives = 55/103 (53%), Gaps = 2/103 (1%)

Query: 63  HVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVP 122
           + D ++    +  ++ +K  ID +IS  ++E W   R+     +ILR GV E+    S+P
Sbjct: 53  NEDRDYITTKVKNIISKKAEIDEIISQ-ISEGWKLPRIGKEELAILRLGVYEVKYDESIP 111

Query: 123 VEVIISEYVCIAHDFFYGDEPKFINAVLDK-VSRKEEIKRSGC 164
            +V I+E V +A  +      KF+NA+L K VS  ++ K SG 
Sbjct: 112 EKVAINEAVELAKKYCDASASKFVNALLAKLVSGDKDKKESGA 154


>gi|70726392|ref|YP_253306.1| transcription antitermination protein NusB [Staphylococcus
           haemolyticus JCSC1435]
 gi|119390830|sp|Q4L6M5|NUSB_STAHJ RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|68447116|dbj|BAE04700.1| unnamed protein product [Staphylococcus haemolyticus JCSC1435]
          Length = 128

 Score = 51.2 bits (121), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 43/139 (30%), Positives = 66/139 (47%), Gaps = 13/139 (9%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           R  +R+ A Q L+Q+++     T  I+E     F  D E +++  ++H    W   ++ G
Sbjct: 3   RKESRMQAFQTLFQLEMKDTELT--INE--AINFIKDDEPELDFDFIH----W---LVTG 51

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
           V D +  +D  I   L + WS  RL      ILR    EL+     P +VII+E V +A 
Sbjct: 52  VKDHEPVLDDTIKPHLKD-WSLQRLLKTDRIILRMATFELLHS-DTPPKVIINEAVELAK 109

Query: 136 DFFYGDEPKFINAVLDKVS 154
            F   +  KFIN VL  + 
Sbjct: 110 QFSDDEHYKFINGVLSNIK 128


>gi|317176809|dbj|BAJ54598.1| transcription antitermination protein NusB [Helicobacter pylori
           F16]
          Length = 138

 Score = 51.2 bits (121), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 41/141 (29%), Positives = 68/141 (48%), Gaps = 13/141 (9%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           R  AR A V+ LY  +          S  E  +  A + L+ + +  +  L +   + +G
Sbjct: 4   RTQARGAVVELLYAFE----------SGNEEIKKIASSMLEEKKIK-NNQLAFALSLFNG 52

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
           V+++   ID LI   L + W F RL  +  +ILR G  E I        +II+E + +  
Sbjct: 53  VLEKLNEIDALIEPHLKD-WDFKRLGSMEKAILRLGTYE-IGFTPTQNPIIINECIELGK 110

Query: 136 DFFYGDEPKFINAVLDKVSRK 156
            +   + PKF+NA+LD +S+K
Sbjct: 111 LYAEPNTPKFLNAILDSLSKK 131


>gi|303255410|ref|ZP_07341476.1| transcription antitermination protein NusB [Streptococcus
           pneumoniae BS455]
 gi|303259505|ref|ZP_07345482.1| transcription antitermination protein NusB [Streptococcus
           pneumoniae SP-BS293]
 gi|303262368|ref|ZP_07348311.1| transcription antitermination protein NusB [Streptococcus
           pneumoniae SP14-BS292]
 gi|303264786|ref|ZP_07350703.1| transcription antitermination protein NusB [Streptococcus
           pneumoniae BS397]
 gi|303266625|ref|ZP_07352510.1| transcription antitermination protein NusB [Streptococcus
           pneumoniae BS457]
 gi|303268858|ref|ZP_07354645.1| transcription antitermination protein NusB [Streptococcus
           pneumoniae BS458]
 gi|301801342|emb|CBW34025.1| N utilization substance protein B homolog (NusB protein)
           [Streptococcus pneumoniae INV200]
 gi|302597655|gb|EFL64735.1| transcription antitermination protein NusB [Streptococcus
           pneumoniae BS455]
 gi|302636467|gb|EFL66959.1| transcription antitermination protein NusB [Streptococcus
           pneumoniae SP14-BS292]
 gi|302639439|gb|EFL69897.1| transcription antitermination protein NusB [Streptococcus
           pneumoniae SP-BS293]
 gi|302641639|gb|EFL71999.1| transcription antitermination protein NusB [Streptococcus
           pneumoniae BS458]
 gi|302643869|gb|EFL74131.1| transcription antitermination protein NusB [Streptococcus
           pneumoniae BS457]
 gi|302645653|gb|EFL75883.1| transcription antitermination protein NusB [Streptococcus
           pneumoniae BS397]
          Length = 140

 Score = 51.2 bits (121), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 31/99 (31%), Positives = 51/99 (51%), Gaps = 2/99 (2%)

Query: 61  YLHVDLEWFRV-IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECH 119
           Y  V L  F + ++ GV  +K+ +D  I+  L   W+  RL ++  ++LR GV E I   
Sbjct: 43  YTDVQLPAFLIDLVSGVQAKKEELDKQITQHLKAGWTIERLTLVERNLLRLGVFE-ITSF 101

Query: 120 SVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEE 158
             P  V I+E + +A DF      +FIN +L +   +E+
Sbjct: 102 DTPQLVAINEAIELAKDFSDQKSARFINGLLSQFVTEEQ 140


>gi|218888175|ref|YP_002437496.1| NusB antitermination factor [Desulfovibrio vulgaris str. 'Miyazaki
           F']
 gi|226738898|sp|B8DJF1|NUSB_DESVM RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|218759129|gb|ACL10028.1| NusB antitermination factor [Desulfovibrio vulgaris str. 'Miyazaki
           F']
          Length = 165

 Score = 51.2 bits (121), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 26/90 (28%), Positives = 47/90 (52%), Gaps = 1/90 (1%)

Query: 72  IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
           +IHGV   +  +D  +S   ++ W   R+  +  ++LR  V E++    VP +V ++E +
Sbjct: 71  VIHGVWKTQAELDEAVSG-FSQNWRVERMGRVELTLLRIAVYEMLFRDDVPAKVAMNEAI 129

Query: 132 CIAHDFFYGDEPKFINAVLDKVSRKEEIKR 161
            ++  F   +   FIN +LD V+R  E  R
Sbjct: 130 ELSKQFGDDNSRGFINGILDAVARAVESGR 159


>gi|222153656|ref|YP_002562833.1| transcription antitermination protein NusB [Streptococcus uberis
           0140J]
 gi|254772659|sp|B9DVJ4|NUSB_STRU0 RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|222114469|emb|CAR43313.1| N utilization substance protein B homolog (NusB protein)
           [Streptococcus uberis 0140J]
          Length = 142

 Score = 51.2 bits (121), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 41/142 (28%), Positives = 69/142 (48%), Gaps = 18/142 (12%)

Query: 15  RRGIARLAAVQALYQIDIIG--CSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVI 72
           RR + R  A QAL+ ++  G   S ++   +Y+     +D E D+ +  L         +
Sbjct: 9   RRDL-RERAFQALFNMEHGGDFLSASQFAYDYDK---VSDQEHDIPAFLL--------TL 56

Query: 73  IHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVC 132
           ++GV++ K  +D +I   L   WS  RL +   ++LR G+ E+      P  V ++E + 
Sbjct: 57  VNGVVNHKDELDAIIKEHLKAGWSIERLTLTDRTMLRLGLYEIKFFEETPDRVALNEIIE 116

Query: 133 IAHDFFYGDE--PKFINAVLDK 152
           IA    Y DE   KFIN +L +
Sbjct: 117 IAKK--YSDETSAKFINGLLSQ 136


>gi|262371010|ref|ZP_06064333.1| transcription termination L factor [Acinetobacter johnsonii SH046]
 gi|262314086|gb|EEY95130.1| transcription termination L factor [Acinetobacter johnsonii SH046]
          Length = 152

 Score = 51.2 bits (121), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 38/136 (27%), Positives = 63/136 (46%), Gaps = 13/136 (9%)

Query: 19  ARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMD 78
           AR  AVQ +Y+  +      EI           +    VE+    VDL ++  ++  V+ 
Sbjct: 15  ARRFAVQGIYEWQMSHNPVHEI-----------EARTRVENAMHKVDLSYYHELLTQVVA 63

Query: 79  RKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFF 138
             + +D L+   L  +   S LD +  + LR G  EL E   +P  V++ E + +A  F 
Sbjct: 64  NHEALDALLIPVLDRE--VSALDGVELATLRLGAYELKEHLEIPYRVVLDEAIELAKHFG 121

Query: 139 YGDEPKFINAVLDKVS 154
             D  K+IN VLD+++
Sbjct: 122 GADSHKYINGVLDRLA 137


>gi|229524269|ref|ZP_04413674.1| transcription termination protein NusB [Vibrio cholerae bv.
           albensis VL426]
 gi|229337850|gb|EEO02867.1| transcription termination protein NusB [Vibrio cholerae bv.
           albensis VL426]
          Length = 156

 Score = 51.2 bits (121), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 43/153 (28%), Positives = 72/153 (47%), Gaps = 16/153 (10%)

Query: 10  LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVES--------VY 61
           +K + RR  AR  A+QA+Y   I    T E ++  E  +F    + D E           
Sbjct: 5   VKPAARRN-ARQFALQAIYSWQI----TKENVATIEE-QFLTSGKYDEEEHRAAEPALAA 58

Query: 62  LHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSV 121
              D+ +FR ++ GV+     +D  +   ++       LDM+  ++LR  + E+     V
Sbjct: 59  PETDVAYFRDLLAGVVLNHNELDSKLRPFVSR--PMQDLDMMELALLRLAMYEMTRREDV 116

Query: 122 PVEVIISEYVCIAHDFFYGDEPKFINAVLDKVS 154
           P +V+I+E + +A  F   D  KF+N VLDK +
Sbjct: 117 PYKVVINEAIELAKVFAAEDSHKFVNGVLDKAA 149


>gi|328956982|ref|YP_004374368.1| transcription antitermination protein NusB [Carnobacterium sp.
           17-4]
 gi|328673306|gb|AEB29352.1| transcription antitermination protein NusB [Carnobacterium sp.
           17-4]
          Length = 147

 Score = 51.2 bits (121), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 41/140 (29%), Positives = 72/140 (51%), Gaps = 14/140 (10%)

Query: 15  RRGIARLAAVQALYQIDIIGCSTTEIISEYETYR--FCADTEL--DVESVYLHVDLEWFR 70
           RR I R  A+Q+L+Q+     S  E +S+ E  +    ++ EL  +VE+V +     +  
Sbjct: 5   RRDI-REKALQSLFQL-----SANEELSKEEAMQQALTSEAELADEVETVLVP---SYLD 55

Query: 71  VIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEY 130
           +++ GV++++  ID  I + L E WS +RL      I+R  + E++    VP  V ++E 
Sbjct: 56  LLVSGVLEKQDEIDEKIKAHL-ENWSLNRLAKTDLMIIRIAIFEMMYVSDVPDRVALNEA 114

Query: 131 VCIAHDFFYGDEPKFINAVL 150
           + I   +      KF+N VL
Sbjct: 115 LEITKKYSDEKSRKFVNGVL 134


>gi|78046359|ref|YP_362534.1| transcription antitermination protein NusB [Xanthomonas campestris
           pv. vesicatoria str. 85-10]
 gi|325928457|ref|ZP_08189648.1| transcription antitermination factor NusB [Xanthomonas perforans
           91-118]
 gi|119390847|sp|Q3BXH9|NUSB_XANC5 RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|78034789|emb|CAJ22434.1| transcription termination factor NusB [Xanthomonas campestris pv.
           vesicatoria str. 85-10]
 gi|325541174|gb|EGD12725.1| transcription antitermination factor NusB [Xanthomonas perforans
           91-118]
          Length = 162

 Score = 51.2 bits (121), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 38/146 (26%), Positives = 64/146 (43%), Gaps = 16/146 (10%)

Query: 25  QALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHID 84
           QA+Y   I G    ++I+++             E  +   DL +F  ++ GV+  +  +D
Sbjct: 30  QAVYAWQISGGFAKQVIAQFAH-----------EQAHEVADLAYFENLVEGVLSNRAELD 78

Query: 85  LLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPK 144
             ++  L    S   +D I  ++LR    EL+    VP  V+I+E +  A  F       
Sbjct: 79  TALTPYLDR--SVEEVDAIERAVLRLAAYELLYRQDVPYRVVINEAIETAKRFGSEHGHT 136

Query: 145 FINAVLDKVS---RKEEIKRSGCVSA 167
           ++N VLD+ +   RK E   SG   A
Sbjct: 137 YVNGVLDRAAVEWRKVESGASGASGA 162


>gi|297198328|ref|ZP_06915725.1| transcription antitermination factor NusB [Streptomyces sviceus
           ATCC 29083]
 gi|197714379|gb|EDY58413.1| transcription antitermination factor NusB [Streptomyces sviceus
           ATCC 29083]
          Length = 144

 Score = 51.2 bits (121), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 25/82 (30%), Positives = 44/82 (53%), Gaps = 1/82 (1%)

Query: 72  IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
           ++ G  +  Q ID LI+   +  W+  R+ ++  +ILR G  ELI     P  V++ E V
Sbjct: 52  LVEGYAEHAQRIDELIAQY-SVGWTLDRMPVVDRNILRLGAYELIWADETPDAVVLDEMV 110

Query: 132 CIAHDFFYGDEPKFINAVLDKV 153
            +A +F   + P F+N +L ++
Sbjct: 111 QLAKEFSTDESPSFVNGLLGRL 132


>gi|254391339|ref|ZP_05006543.1| transcription antitermination protein NusB [Streptomyces
           clavuligerus ATCC 27064]
 gi|294811554|ref|ZP_06770197.1| Transcription antitermination protein NusB [Streptomyces
           clavuligerus ATCC 27064]
 gi|326440061|ref|ZP_08214795.1| transcription antitermination protein NusB [Streptomyces
           clavuligerus ATCC 27064]
 gi|197705030|gb|EDY50842.1| transcription antitermination protein NusB [Streptomyces
           clavuligerus ATCC 27064]
 gi|294324153|gb|EFG05796.1| Transcription antitermination protein NusB [Streptomyces
           clavuligerus ATCC 27064]
          Length = 142

 Score = 51.2 bits (121), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 34/137 (24%), Positives = 60/137 (43%), Gaps = 9/137 (6%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           R  AR  A Q L++ D    S   +++++  +      +  V    +         ++ G
Sbjct: 4   RNKARKRAFQILFEADQRDVSVQTVLADWIRHSRTDTRQPPVSEYTME--------LVEG 55

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
                  ID LI++   E W   R+ ++  +ILR G  EL+     P  V+I E V +A 
Sbjct: 56  YAQYAPRIDELIATY-AEGWDLDRMPVVDRNILRLGTYELVWVDGTPDAVVIDEAVELAK 114

Query: 136 DFFYGDEPKFINAVLDK 152
           +F   + P F+N +L +
Sbjct: 115 EFSTDESPAFVNGLLGR 131


>gi|326801392|ref|YP_004319211.1| NusB antitermination factor [Sphingobacterium sp. 21]
 gi|326552156|gb|ADZ80541.1| NusB antitermination factor [Sphingobacterium sp. 21]
          Length = 315

 Score = 51.2 bits (121), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 23/65 (35%), Positives = 38/65 (58%)

Query: 89  SCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINA 148
           S  T+ W   R+ +I   ++R  + EL+   S+PV+V I+EY+ I+ +F       FIN 
Sbjct: 232 SGKTKNWEADRIALIDTLLMRMAITELLNFSSIPVKVTINEYIEISKEFSTPKSNSFING 291

Query: 149 VLDKV 153
           +LDK+
Sbjct: 292 ILDKI 296


>gi|71909351|ref|YP_286938.1| NusB antitermination factor [Dechloromonas aromatica RCB]
 gi|119390763|sp|Q479L3|NUSB_DECAR RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|71848972|gb|AAZ48468.1| NusB antitermination factor [Dechloromonas aromatica RCB]
          Length = 163

 Score = 51.2 bits (121), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 43/151 (28%), Positives = 69/151 (45%), Gaps = 15/151 (9%)

Query: 4   QDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLH 63
           QD K   K + RR  AR   +Q LYQ  + G     I    E Y      E++    +  
Sbjct: 12  QDVKAPPKSARRR--AREFVLQGLYQWRVGGADEASI----EAYA----PEMEG---FAK 58

Query: 64  VDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPV 123
            D E+F   + GV+ +++ +   +S+ +     F+ L  +   IL  G  E++     P 
Sbjct: 59  ADREFFVGTLRGVISQQEKLIEQVSTHIDR--PFNELSPVEACILMLGSFEMLNHAETPY 116

Query: 124 EVIISEYVCIAHDFFYGDEPKFINAVLDKVS 154
            VII+E + +   F   D  K++N VLDKV+
Sbjct: 117 RVIINEAIELTKAFGGTDGHKYVNGVLDKVA 147


>gi|293607587|ref|ZP_06689921.1| conserved hypothetical protein [Achromobacter piechaudii ATCC
           43553]
 gi|292814020|gb|EFF73167.1| conserved hypothetical protein [Achromobacter piechaudii ATCC
           43553]
          Length = 169

 Score = 51.2 bits (121), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 41/146 (28%), Positives = 67/146 (45%), Gaps = 24/146 (16%)

Query: 24  VQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHI 83
           +Q +Y   + G   T+   E + +    DTE      +   D +WF+ ++HGV+      
Sbjct: 32  LQGVYAWLLRGGEGTQDAGEIDAH--LRDTE-----DFSEADAQWFKTLLHGVLRE---- 80

Query: 84  DLLISSCLTEKWS------FSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDF 137
               +  L E+++       + L  +   IL  G  ELI    VP +V I+E V +A  F
Sbjct: 81  ----APTLRERFTPYVDRPLAELSPVEHGILLIGSFELIHHVEVPYKVAINEAVELAKSF 136

Query: 138 FYGDEPKFINAVLDKVS---RKEEIK 160
              D  KF+N VLDK++   R  E++
Sbjct: 137 GGTDGFKFVNGVLDKLAADVRANEVQ 162


>gi|318057074|ref|ZP_07975797.1| transcription antitermination protein NusB [Streptomyces sp.
           SA3_actG]
 gi|318080976|ref|ZP_07988308.1| transcription antitermination protein NusB [Streptomyces sp.
           SA3_actF]
 gi|333028359|ref|ZP_08456423.1| putative transcription antitermination protein NusB [Streptomyces
           sp. Tu6071]
 gi|332748211|gb|EGJ78652.1| putative transcription antitermination protein NusB [Streptomyces
           sp. Tu6071]
          Length = 144

 Score = 51.2 bits (121), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 37/146 (25%), Positives = 69/146 (47%), Gaps = 10/146 (6%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           R  AR  A Q L++ D  G     +++++  +    DT+    S Y    +E    ++ G
Sbjct: 4   RNTARKRAFQILFEADQRGTDVLTVLADWVRHS-RGDTQQPPVSEYT---ME----LVEG 55

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
             +  + ID +I+    + W   R+ ++  +I+R G  EL+     P  V++ E V +A 
Sbjct: 56  YAEHARRIDEVIAKYSVD-WPLDRMPVVDRNIVRLGAHELVWVDGTPDAVVMDEAVELAK 114

Query: 136 DFFYGDEPKFINAVLDKVSR-KEEIK 160
           +F   D P F+N +L +    K E++
Sbjct: 115 EFSTDDSPAFVNGLLGRFKNLKPELR 140


>gi|294628337|ref|ZP_06706897.1| transcription antitermination factor NusB [Streptomyces sp. e14]
 gi|292831670|gb|EFF90019.1| transcription antitermination factor NusB [Streptomyces sp. e14]
          Length = 147

 Score = 51.2 bits (121), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 40/148 (27%), Positives = 67/148 (45%), Gaps = 14/148 (9%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFC-ADTELDVESVYLHVDLEWFRVIIH 74
           R  AR  A Q L++ D  G     +++++   R   +DT     S Y          ++ 
Sbjct: 4   RNTARKRAFQILFEGDQRGVGVLTVLADW--VRLSRSDTRQPPVSEYTMQ-------LVE 54

Query: 75  GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134
           G  +    ID L++      W+  R+ ++  +ILR G  ELI     P  V++ E V +A
Sbjct: 55  GYAEHATRIDELLAQYAV-GWTLDRMPVVDRNILRLGAYELIWVDETPDAVVLDEMVQLA 113

Query: 135 HDFFYGDEPKFINAVLDKVSRKEEIKRS 162
            +F   + P F+N +L    R +E+K S
Sbjct: 114 KEFSTDESPSFVNGLL---GRLKELKPS 138


>gi|163858272|ref|YP_001632570.1| transcription antitermination protein NusB [Bordetella petrii DSM
           12804]
 gi|163262000|emb|CAP44302.1| N utilization substance protein B homolog [Bordetella petrii]
          Length = 138

 Score = 51.2 bits (121), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 35/131 (26%), Positives = 58/131 (44%), Gaps = 9/131 (6%)

Query: 24  VQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHI 83
           +Q +Y   + G   T+   E + +   AD        +   D +WF+ ++HGV+     +
Sbjct: 1   MQGVYAWLLRGGEGTQDAGEIDAHLRDADD-------FSEADAQWFKTLLHGVLQEAGGL 53

Query: 84  DLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEP 143
               +  +        L  +   IL  G  EL+    VP +V I+E V +A  F   D  
Sbjct: 54  RERFTPYIDR--PLGELSPVEHGILLIGSYELVHHLEVPYKVAINEAVELAKSFGGTDGF 111

Query: 144 KFINAVLDKVS 154
           KF+N VLDK++
Sbjct: 112 KFVNGVLDKLA 122


>gi|306836202|ref|ZP_07469186.1| N utilization substance protein B [Corynebacterium accolens ATCC
           49726]
 gi|304567923|gb|EFM43504.1| N utilization substance protein B [Corynebacterium accolens ATCC
           49726]
          Length = 212

 Score = 51.2 bits (121), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 28/89 (31%), Positives = 47/89 (52%)

Query: 67  EWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVI 126
           ++ +VI+ GV +    ID  IS  L++ W   R+  +  +ILR  V EL+    VP    
Sbjct: 62  DYTKVIVQGVAEELDAIDDTISRYLSQNWELHRIPAVDRAILRLSVWELLFNPDVPTATA 121

Query: 127 ISEYVCIAHDFFYGDEPKFINAVLDKVSR 155
           + E V +A  + +     +I+AVLD V++
Sbjct: 122 VVEGVELASQYSHDQAAPYIHAVLDDVAQ 150


>gi|308183797|ref|YP_003927930.1| transcription antitermination protein NusB [Helicobacter pylori
           SJM180]
 gi|308059717|gb|ADO01613.1| transcription antitermination protein NusB [Helicobacter pylori
           SJM180]
          Length = 138

 Score = 50.8 bits (120), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 41/141 (29%), Positives = 68/141 (48%), Gaps = 13/141 (9%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           R  AR A V+ LY  +          S  E  +  A + L+ + +  +  L +   + +G
Sbjct: 4   RTQARGAVVELLYAFE----------SGNEGIKKIASSMLEEKKIK-NNQLAFALSLFNG 52

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
           V+++   ID LI   L + W F RL  +  +ILR G  E I        +II+E + +  
Sbjct: 53  VLEKINEIDALIEPHLKD-WDFKRLGSMEKAILRLGAYE-IGFTPTQNPIIINECIELGK 110

Query: 136 DFFYGDEPKFINAVLDKVSRK 156
            +   + PKF+NA+LD +S+K
Sbjct: 111 LYAEPNTPKFLNAILDSLSKK 131


>gi|302335896|ref|YP_003801103.1| NusB antitermination factor [Olsenella uli DSM 7084]
 gi|301319736|gb|ADK68223.1| NusB antitermination factor [Olsenella uli DSM 7084]
          Length = 165

 Score = 50.8 bits (120), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 38/156 (24%), Positives = 71/156 (45%), Gaps = 16/156 (10%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEII-SEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74
           R +AR  A+Q L+Q +  G S  E++  +Y   +   D               +   +  
Sbjct: 10  RTLARSQALQLLFQAEATGRSVFEVLEGDYALTQGPLDP--------------FGESLAR 55

Query: 75  GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134
           GV D +  +D +I+   +  WS SR+  +  ++LR  + E++E   V   + I E V +A
Sbjct: 56  GVDDMRTDLDAIIA-VTSSNWSISRMPSVDRNLLRLALYEMLEVDEVATPIAIDECVELA 114

Query: 135 HDFFYGDEPKFINAVLDKVSRKEEIKRSGCVSAITQ 170
             +   +  +F+N +L +V+ + E+      SA  Q
Sbjct: 115 KAYGTAESSRFVNGLLGRVAARLELGEDVISSARAQ 150


>gi|241767422|ref|ZP_04765122.1| NusB antitermination factor [Acidovorax delafieldii 2AN]
 gi|241361805|gb|EER58071.1| NusB antitermination factor [Acidovorax delafieldii 2AN]
          Length = 174

 Score = 50.8 bits (120), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 39/141 (27%), Positives = 67/141 (47%), Gaps = 13/141 (9%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           R  AR  A+QALYQ  I+G +    I  +           D+   +   D   +  ++HG
Sbjct: 37  RSRAREFALQALYQ-HIVGGNEAAAIDAFTR---------DLAGFH-KADAAHYDAVLHG 85

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
            +D    +D LI+  L  K   + +  I  + +  GV E   C  VP  V+++E + +A 
Sbjct: 86  CIDAAADLDALITPLLDRK--MAEISPIERATMWIGVYEFQHCLDVPWRVVLNECIELAK 143

Query: 136 DFFYGDEPKFINAVLDKVSRK 156
           +F   D  K++NAVL+ ++ +
Sbjct: 144 EFGGTDGHKYVNAVLNGLAPR 164


>gi|160902466|ref|YP_001568047.1| NusB antitermination factor [Petrotoga mobilis SJ95]
 gi|160360110|gb|ABX31724.1| NusB antitermination factor [Petrotoga mobilis SJ95]
          Length = 151

 Score = 50.8 bits (120), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 38/157 (24%), Positives = 72/157 (45%), Gaps = 10/157 (6%)

Query: 1   MTIQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESV 60
           MT +  + +  +  +R + +L   ++L+Q+ I       I+  +E     A  E   ES 
Sbjct: 1   MTNKRTRMNENIPKKRMMRKLI-FESLFQLSIKDVKLDNILFTFEKLNEQAHLE---ESY 56

Query: 61  YLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHS 120
           YL       +  I  +   K   D LI+   +E W   R+  I  +++R  + ELI    
Sbjct: 57  YLEA-----KQYIEDIYKNKNEYDALINKY-SEGWRVERIGNIEKTVMRIFIYELINKKD 110

Query: 121 VPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKE 157
           +PV+VI++E   +   +       F+N ++DK++R +
Sbjct: 111 IPVKVILNESTELTKTYATQKAAAFVNGIMDKIARSQ 147


>gi|325693662|gb|EGD35581.1| N utilization substance protein B [Streptococcus sanguinis SK150]
          Length = 143

 Score = 50.8 bits (120), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 40/145 (27%), Positives = 72/145 (49%), Gaps = 9/145 (6%)

Query: 9   DLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEW 68
           D+ L  RRG+ R  A QAL  ++  G      + E   + +  D + D ++     D+  
Sbjct: 3   DILLESRRGL-RQRAFQALMSLEYEGD-----LVEACRFAYSYDKDEDADNAA-EADIPA 55

Query: 69  FRV-IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVII 127
           F + ++ GV+  K  +D  I+  L + W+  RL ++  +ILR G+ E+ E  + P  V +
Sbjct: 56  FLLNLVSGVVQSKDDLDKKIAQHLKKGWTVDRLTLVEKNILRLGIFEITEFDT-PQLVAV 114

Query: 128 SEYVCIAHDFFYGDEPKFINAVLDK 152
           +E + ++  F      KFIN +L +
Sbjct: 115 NEAIELSKQFSDEKSSKFINGILSQ 139


>gi|332357987|gb|EGJ35820.1| N utilization substance protein B [Streptococcus sanguinis SK1056]
          Length = 143

 Score = 50.8 bits (120), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 42/146 (28%), Positives = 71/146 (48%), Gaps = 11/146 (7%)

Query: 9   DLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVES-VYLHVDLE 67
           D+ L  RRG+ R  A QAL  ++  G          E  RF    + D E+   +  D+ 
Sbjct: 3   DILLESRRGL-RQRAFQALMSLEYEGDLV-------EACRFAYSYDKDEEADKAVEADIP 54

Query: 68  WFRV-IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVI 126
            F + ++ GV+  K  +D  I+  L + W+  RL ++  +ILR G+ E+ E  + P  V 
Sbjct: 55  AFLLNLVSGVVQSKDDLDKKIAQHLKKGWTVDRLTLVEKNILRLGIFEITEFDT-PQLVA 113

Query: 127 ISEYVCIAHDFFYGDEPKFINAVLDK 152
           ++E + ++  F      KFIN +L +
Sbjct: 114 VNEAIELSKQFSDEKSSKFINGILSQ 139


>gi|310658653|ref|YP_003936374.1| transcription antitermination protein [Clostridium sticklandii DSM
           519]
 gi|308825431|emb|CBH21469.1| transcription antitermination protein [Clostridium sticklandii]
          Length = 133

 Score = 50.8 bits (120), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 40/146 (27%), Positives = 72/146 (49%), Gaps = 18/146 (12%)

Query: 15  RRGIARLAAVQALYQIDIIGCSTTEIISEYETYR-FCADTELDVESVYLHVDLEWFRVII 73
           +R   R AAV+  Y++DI      +   E++ Y+ F A+ EL      + +   + + + 
Sbjct: 2   KRKELREAAVKLFYEMDI------QKTFEHKFYKNFLAENEL------VALKDNYLKEVF 49

Query: 74  HGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCI 133
              +  + +ID +I    T  W   R+  +  SILR  + E++    +P +V I+E + +
Sbjct: 50  DNFLLNRDNIDDIIQKSSTS-WDIKRIAKVDLSILRVAITEILYLSDIPDKVSINEAIDL 108

Query: 134 AHDFFYGDEP--KFINAVLDKVSRKE 157
           A    YGDE   KF+N +L K+ + E
Sbjct: 109 AKK--YGDENSYKFVNGLLGKIVKNE 132


>gi|284032250|ref|YP_003382181.1| NusB antitermination factor [Kribbella flavida DSM 17836]
 gi|283811543|gb|ADB33382.1| NusB antitermination factor [Kribbella flavida DSM 17836]
          Length = 136

 Score = 50.8 bits (120), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 37/138 (26%), Positives = 65/138 (47%), Gaps = 14/138 (10%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           R  AR  A+  LY+ ++ G      +++       AD +  V         E+   ++ G
Sbjct: 4   RSKARKRALDVLYESEVRGLPVGGTLADR-----VADNDPPVN--------EFTVALVEG 50

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
           V +    ID L+S+  +  W+  R+  +  ++LR GV EL+    VP  V +SE V +A 
Sbjct: 51  VAEHIAAIDDLLSTH-SVGWTLDRMPAVDRNVLRIGVYELLFDEQVPDVVAVSEAVALAR 109

Query: 136 DFFYGDEPKFINAVLDKV 153
           D    + P F+N +L ++
Sbjct: 110 DLSTDESPAFVNGLLARL 127


>gi|300909746|ref|ZP_07127207.1| transcription antitermination factor NusB [Lactobacillus reuteri
           SD2112]
 gi|300893611|gb|EFK86970.1| transcription antitermination factor NusB [Lactobacillus reuteri
           SD2112]
          Length = 141

 Score = 50.8 bits (120), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 32/117 (27%), Positives = 54/117 (46%), Gaps = 7/117 (5%)

Query: 47  YRFCADTELDVESVY---LHVD----LEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSR 99
           +   +D E D+++VY    H D      +   +++GV + +  +D  I+  L   W+ +R
Sbjct: 20  FALQSDPEADIQTVYEAIPHHDEKQIPPYLLTLVNGVREHQDQLDEQINDLLASGWTINR 79

Query: 100 LDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRK 156
           L      ILR  + E+    +VP  V I+E + +   F      KFIN  L K  R+
Sbjct: 80  LAKPDLVILRLALFEIQYAENVPTVVAINEALELTKTFSSDKSRKFINGALGKFERQ 136


>gi|324990231|gb|EGC22169.1| N utilization substance protein B [Streptococcus sanguinis SK353]
 gi|325688019|gb|EGD30038.1| N utilization substance protein B [Streptococcus sanguinis SK72]
          Length = 143

 Score = 50.8 bits (120), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 43/150 (28%), Positives = 72/150 (48%), Gaps = 19/150 (12%)

Query: 9   DLKLSHRRGIARLAAVQAL----YQIDII-GCSTTEIISEYETYRFCADTELDVESVYLH 63
           D+ L  RRG+ R  A QAL    Y+ D++  C           Y +  D E D  +    
Sbjct: 3   DILLESRRGL-RQRAFQALMSLEYEGDLVEACRFA--------YSYDKDEETDKAA---E 50

Query: 64  VDLEWFRV-IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVP 122
            D+  F + ++ GV+  K  +D  I+  L + W+  RL ++  +ILR G+ E+ E  + P
Sbjct: 51  ADIPAFLLNLVSGVVQSKDDLDKKIAQHLKKGWTVDRLTLVEKNILRLGIFEITEFDT-P 109

Query: 123 VEVIISEYVCIAHDFFYGDEPKFINAVLDK 152
             V ++E + ++  F      KFIN +L +
Sbjct: 110 QLVAVNEAIELSKQFSDEKSSKFINGILSQ 139


>gi|322412645|gb|EFY03553.1| transcription antitermination protein NusB [Streptococcus
           dysgalactiae subsp. dysgalactiae ATCC 27957]
          Length = 149

 Score = 50.8 bits (120), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 42/154 (27%), Positives = 74/154 (48%), Gaps = 21/154 (13%)

Query: 2   TIQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVY 61
           + Q++++DL         R  A QAL+ +++ G             +F  D +  V+   
Sbjct: 4   SFQNSRRDL---------RERAFQALFSMEMGGDFLV-------ASQFAYDYDKVVDEGN 47

Query: 62  LHVDLEWFRV-IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHS 120
             ++L  F + +++GV D K+ +D  IS  L   WS  RL +   ++LR G+ E+   + 
Sbjct: 48  EALELPIFLLNLVNGVNDHKEELDRTISEHLKTGWSLERLTVTDKTLLRLGLFEIKYFNE 107

Query: 121 VPVEVIISEYVCIAHDFFYGDE--PKFINAVLDK 152
            P  V ++E + +A    Y DE   KFIN +L +
Sbjct: 108 TPDRVALNEIIEVAKK--YSDETSAKFINGLLSQ 139


>gi|182417973|ref|ZP_02949281.1| transcription antitermination factor NusB [Clostridium butyricum
           5521]
 gi|237668086|ref|ZP_04528070.1| transcription antitermination factor NusB [Clostridium butyricum E4
           str. BoNT E BL5262]
 gi|182378144|gb|EDT75679.1| transcription antitermination factor NusB [Clostridium butyricum
           5521]
 gi|237656434|gb|EEP53990.1| transcription antitermination factor NusB [Clostridium butyricum E4
           str. BoNT E BL5262]
          Length = 131

 Score = 50.8 bits (120), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 41/141 (29%), Positives = 68/141 (48%), Gaps = 14/141 (9%)

Query: 15  RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74
            R ++R  A++  + +    CS   +    ET  F  + E D++     +DL + +  + 
Sbjct: 2   NRKLSREKAMELFFGM---TCSKDTVEEAVET--FIDNYEGDIK----ELDLTYIKKALI 52

Query: 75  GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134
           G+ + K+ ID  ISS L + W   R+  +  +ILR    E++    VP  V I+E + I 
Sbjct: 53  GIENNKEAIDEAISSNL-QNWKIDRISKVNLTILRLAAYEILFDEEVPRSVAINEALEIT 111

Query: 135 HDFFYGDEPK--FINAVLDKV 153
               Y DE    F+N VLDK+
Sbjct: 112 RK--YSDEKSVSFVNGVLDKI 130


>gi|330685971|gb|EGG97594.1| transcription antitermination factor NusB [Staphylococcus
           epidermidis VCU121]
          Length = 128

 Score = 50.8 bits (120), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 41/139 (29%), Positives = 63/139 (45%), Gaps = 13/139 (9%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           R  +R+ A Q L+Q++I     T      E   F  D        Y  +D ++   ++ G
Sbjct: 3   RKESRVQAFQTLFQLEIKDTDLTI----KEAINFIKDD-------YPDLDFDFINWLVTG 51

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
           V D +  +D  I   L + WS  RL      ILR    E++   + P +V+I+E V +A 
Sbjct: 52  VKDHEPVLDEKIKPYLKD-WSLERLLKTDRIILRMATFEILHSDT-PAKVVINEAVELAK 109

Query: 136 DFFYGDEPKFINAVLDKVS 154
            F   D  KFIN VL  ++
Sbjct: 110 QFSDDDHYKFINGVLSNIN 128


>gi|323127989|gb|ADX25286.1| transcription antitermination protein NusB [Streptococcus
           dysgalactiae subsp. equisimilis ATCC 12394]
          Length = 149

 Score = 50.8 bits (120), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 42/154 (27%), Positives = 74/154 (48%), Gaps = 21/154 (13%)

Query: 2   TIQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVY 61
           + Q++++DL         R  A QAL+ +++ G             +F  D +  V+   
Sbjct: 4   SFQNSRRDL---------RERAFQALFSMEMGGDFLV-------ASQFAYDYDKVVDEGN 47

Query: 62  LHVDLEWFRV-IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHS 120
             ++L  F + +++GV D K+ +D  IS  L   WS  RL +   ++LR G+ E+   + 
Sbjct: 48  EALELPIFLLNLVNGVNDHKKELDRTISEHLKTGWSLERLTVTDKTLLRLGLFEIKYFNE 107

Query: 121 VPVEVIISEYVCIAHDFFYGDE--PKFINAVLDK 152
            P  V ++E + +A    Y DE   KFIN +L +
Sbjct: 108 TPDRVALNEIIEVAKK--YSDETSAKFINGLLSQ 139


>gi|258620990|ref|ZP_05716024.1| N utilization substance protein B [Vibrio mimicus VM573]
 gi|261211383|ref|ZP_05925671.1| transcription termination protein NusB [Vibrio sp. RC341]
 gi|262170766|ref|ZP_06038444.1| transcription termination protein NusB [Vibrio mimicus MB-451]
 gi|262404600|ref|ZP_06081155.1| transcription termination protein NusB [Vibrio sp. RC586]
 gi|258586378|gb|EEW11093.1| N utilization substance protein B [Vibrio mimicus VM573]
 gi|260839338|gb|EEX65964.1| transcription termination protein NusB [Vibrio sp. RC341]
 gi|261891842|gb|EEY37828.1| transcription termination protein NusB [Vibrio mimicus MB-451]
 gi|262349632|gb|EEY98770.1| transcription termination protein NusB [Vibrio sp. RC586]
          Length = 156

 Score = 50.8 bits (120), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 43/153 (28%), Positives = 72/153 (47%), Gaps = 16/153 (10%)

Query: 10  LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVES--------VY 61
           +K + RR  AR  A+QA+Y   I    T E ++  E  +F    + D E           
Sbjct: 5   VKPAARRN-ARQFALQAIYSWQI----TKENVATIEE-QFLTSGKYDEEEHRAAEPALAA 58

Query: 62  LHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSV 121
              D+ +FR ++ GV+     +D  +   ++       LDM+  ++LR  + E+     V
Sbjct: 59  PETDVSYFRDLLAGVVLNHTELDSKLRPFVSR--PMQDLDMMELALLRLAMYEMTRREDV 116

Query: 122 PVEVIISEYVCIAHDFFYGDEPKFINAVLDKVS 154
           P +V+I+E + +A  F   D  KF+N VLDK +
Sbjct: 117 PYKVVINEAIELAKVFAAEDSHKFVNGVLDKAA 149


>gi|255325060|ref|ZP_05366166.1| transcription antitermination protein NusB [Corynebacterium
           tuberculostearicum SK141]
 gi|255297625|gb|EET76936.1| transcription antitermination protein NusB [Corynebacterium
           tuberculostearicum SK141]
          Length = 221

 Score = 50.8 bits (120), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 30/89 (33%), Positives = 45/89 (50%)

Query: 67  EWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVI 126
           E+ +VI+ GV +    ID  IS  L E W   R+  +  +ILR  V EL+    +P    
Sbjct: 62  EYTQVIVKGVAEELDAIDDTISRFLAEDWELHRIPAVDRAILRLSVWELLFNPDIPTATA 121

Query: 127 ISEYVCIAHDFFYGDEPKFINAVLDKVSR 155
           + E V IA  +       +I+AVLD V++
Sbjct: 122 VVEGVEIASQYSNDQAAPYIHAVLDDVAQ 150


>gi|221633595|ref|YP_002522821.1| transcription antitermination factor NusB [Thermomicrobium roseum
           DSM 5159]
 gi|221156287|gb|ACM05414.1| transcription antitermination factor NusB [Thermomicrobium roseum
           DSM 5159]
          Length = 168

 Score = 50.8 bits (120), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 40/153 (26%), Positives = 73/153 (47%), Gaps = 14/153 (9%)

Query: 4   QDNKK--DLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVY 61
           + N+K  D+ L+  R  AR+ A+Q LY++D+   S  E++   E +R  A     V    
Sbjct: 20  RGNQKELDMSLARIRRQARILALQILYEVDVANHSLEEVL---ERHRSQASIAQPVR--- 73

Query: 62  LHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSV 121
                 +   ++ GV   ++ ID +I+      +   +L  +  +ILR  + EL+    V
Sbjct: 74  -----RYAERLVTGVWADRERIDRMIAEA-APAFPVDQLPPVDRNILRIAIYELLHEPDV 127

Query: 122 PVEVIISEYVCIAHDFFYGDEPKFINAVLDKVS 154
           P++  I+E V IA  +      +F+N VL  ++
Sbjct: 128 PLKAAINEAVEIAKQYGGESSSRFVNGVLGTIA 160


>gi|15644635|ref|NP_206803.1| transcription antitermination protein NusB [Helicobacter pylori
           26695]
 gi|7387970|sp|O24853|NUSB_HELPY RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|2313078|gb|AAD07074.1| predicted coding region HP0001 [Helicobacter pylori 26695]
          Length = 138

 Score = 50.8 bits (120), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 41/141 (29%), Positives = 68/141 (48%), Gaps = 13/141 (9%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           R  AR A V+ LY  +          S  E  +  A + L+ + +  +  L +   + +G
Sbjct: 4   RTQARGAVVELLYAFE----------SGNEEIKKIASSMLEEKKIK-NNQLAFALSLFNG 52

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
           V+++   ID LI   L + W F RL  +  +ILR G  E I        +II+E + +  
Sbjct: 53  VLEKINEIDALIEPHLKD-WDFKRLGSMEKAILRLGAYE-IGFTPTQNPIIINECIELGK 110

Query: 136 DFFYGDEPKFINAVLDKVSRK 156
            +   + PKF+NA+LD +S+K
Sbjct: 111 LYAEPNTPKFLNAILDSLSKK 131


>gi|325923217|ref|ZP_08184896.1| transcription antitermination factor NusB [Xanthomonas gardneri
           ATCC 19865]
 gi|325546299|gb|EGD17474.1| transcription antitermination factor NusB [Xanthomonas gardneri
           ATCC 19865]
          Length = 131

 Score = 50.8 bits (120), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 38/144 (26%), Positives = 63/144 (43%), Gaps = 16/144 (11%)

Query: 24  VQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHI 83
           +QA+Y   I G    ++IS++             E  +   DL +F  ++ GV+  +  +
Sbjct: 1   MQAVYAWQISGGFAKQVISQFAH-----------EQAHEVADLAYFESLVEGVLTNRAEL 49

Query: 84  DLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEP 143
           D  ++  L        +D I  ++LR    EL+    VP  V+I+E +  A  F      
Sbjct: 50  DTALTPYLDR--GVEEVDAIERAVLRLAAYELLYRQDVPYRVVINEAIETAKRFGSEHGH 107

Query: 144 KFINAVLDKVS---RKEEIKRSGC 164
            ++N VLD+ S   RK E   SG 
Sbjct: 108 TYVNGVLDRASVEWRKVESGASGA 131


>gi|302874807|ref|YP_003843440.1| NusB antitermination factor [Clostridium cellulovorans 743B]
 gi|307690576|ref|ZP_07633022.1| transcription antitermination protein NusB [Clostridium
           cellulovorans 743B]
 gi|302577664|gb|ADL51676.1| NusB antitermination factor [Clostridium cellulovorans 743B]
          Length = 134

 Score = 50.8 bits (120), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 27/90 (30%), Positives = 46/90 (51%), Gaps = 1/90 (1%)

Query: 64  VDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPV 123
           VD  +   I+ G+ + K + + L+S  L   W  +R+  +  +IL   + E+     +P 
Sbjct: 45  VDFTFVETILSGISENKSNYEELVSQNLI-GWKLNRISKLNLAILLVAIYEIKNIDDIPK 103

Query: 124 EVIISEYVCIAHDFFYGDEPKFINAVLDKV 153
            V I+E V IA  +     P FIN++LDK+
Sbjct: 104 AVSINEAVEIAKKYSDDKAPNFINSILDKI 133


>gi|327469227|gb|EGF14699.1| N utilization substance protein B [Streptococcus sanguinis SK330]
 gi|332363805|gb|EGJ41584.1| N utilization substance protein B [Streptococcus sanguinis SK355]
          Length = 143

 Score = 50.8 bits (120), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 43/150 (28%), Positives = 72/150 (48%), Gaps = 19/150 (12%)

Query: 9   DLKLSHRRGIARLAAVQAL----YQIDII-GCSTTEIISEYETYRFCADTELDVESVYLH 63
           D+ L  RRG+ R  A QAL    Y+ D++  C           Y +  D E D  +    
Sbjct: 3   DILLESRRGL-RQRAFQALMSLEYEGDLVEACRFA--------YSYDKDEEADKAA---E 50

Query: 64  VDLEWFRV-IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVP 122
            D+  F + ++ GV+  K  +D  I+  L + W+  RL ++  +ILR G+ E+ E  + P
Sbjct: 51  ADIPAFLLNLVSGVVQSKDDLDKKIAQHLKKGWTVDRLTLVEKNILRLGIFEITEFDT-P 109

Query: 123 VEVIISEYVCIAHDFFYGDEPKFINAVLDK 152
             V ++E + ++  F      KFIN +L +
Sbjct: 110 QLVAVNEAIELSKQFSDEKSSKFINGILSQ 139


>gi|290474696|ref|YP_003467576.1| transcription termination; L factor [Xenorhabdus bovienii SS-2004]
 gi|289174009|emb|CBJ80796.1| transcription termination; L factor [Xenorhabdus bovienii SS-2004]
          Length = 138

 Score = 50.8 bits (120), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 42/139 (30%), Positives = 68/139 (48%), Gaps = 13/139 (9%)

Query: 23  AVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQH 82
           AVQA+Y   +    +   I++ E ++F   +E DV  V    D+ +FR ++ GV      
Sbjct: 13  AVQAIYSWQL----SKNDIADVE-FQFL--SEQDVTGV----DITYFRELLTGVAVNAAK 61

Query: 83  IDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDE 142
           +D L++  L+ +     L  +  +ILR  + EL     VP +V I+E + +A  F   D 
Sbjct: 62  LDALMAPYLSRQ--LEELGQVEKAILRVAMFELSFRDDVPYKVAINEGIELAKTFGAEDS 119

Query: 143 PKFINAVLDKVSRKEEIKR 161
            KF+N VLDK       K+
Sbjct: 120 HKFVNGVLDKAGPAARKKK 138


>gi|288574984|ref|ZP_06393341.1| NusB antitermination factor [Dethiosulfovibrio peptidovorans DSM
           11002]
 gi|288570725|gb|EFC92282.1| NusB antitermination factor [Dethiosulfovibrio peptidovorans DSM
           11002]
          Length = 143

 Score = 50.8 bits (120), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 41/137 (29%), Positives = 64/137 (46%), Gaps = 13/137 (9%)

Query: 19  ARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMD 78
           AR  A+Q LY +D+    T +  +E     F  + E+DVE+          R ++ GVMD
Sbjct: 13  AREVALQLLYSMDV----TKKHDAEKALNDFSFEDEIDVET--------GVRALVLGVMD 60

Query: 79  RKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFF 138
               ID LI+  +   W   R+  +  + +R  V E +    VPV V ISE V +   F 
Sbjct: 61  HLGEIDNLINVNVV-GWRGDRMVAVDRAAIRLAVYEGLIARVVPVPVAISEAVELVKVFG 119

Query: 139 YGDEPKFINAVLDKVSR 155
             +  +F+N  L ++ R
Sbjct: 120 TDESGRFVNGALARIVR 136


>gi|311739520|ref|ZP_07713355.1| N utilization substance protein B [Corynebacterium pseudogenitalium
           ATCC 33035]
 gi|311305336|gb|EFQ81404.1| N utilization substance protein B [Corynebacterium pseudogenitalium
           ATCC 33035]
          Length = 221

 Score = 50.8 bits (120), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 30/89 (33%), Positives = 45/89 (50%)

Query: 67  EWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVI 126
           E+ +VI+ GV +    ID  IS  L E W   R+  +  +ILR  V EL+    +P    
Sbjct: 62  EYTQVIVKGVAEELDAIDDTISRFLAEDWELHRIPAVDRAILRLSVWELLFNPDIPTATA 121

Query: 127 ISEYVCIAHDFFYGDEPKFINAVLDKVSR 155
           + E V IA  +       +I+AVLD V++
Sbjct: 122 VVEGVEIASQYSNDQAAPYIHAVLDDVAQ 150


>gi|117923480|ref|YP_864097.1| NusB antitermination factor [Magnetococcus sp. MC-1]
 gi|117607236|gb|ABK42691.1| NusB antitermination factor [Magnetococcus sp. MC-1]
          Length = 165

 Score = 50.8 bits (120), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 27/91 (29%), Positives = 50/91 (54%), Gaps = 1/91 (1%)

Query: 64  VDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPV 123
           +D ++F  +  GV   ++ +D  I       WS  R  ++  +ILR G+ EL++   VP 
Sbjct: 57  MDQDYFSQLTLGVEAEREVLDSWIGRA-GAAWSMDRFSVVDHNILRLGIYELLKQPEVPH 115

Query: 124 EVIISEYVCIAHDFFYGDEPKFINAVLDKVS 154
            VI++E + ++  F   +  +F+N V+DKV+
Sbjct: 116 RVILNEAIELSKRFGGEESSRFVNGVMDKVA 146


>gi|330815784|ref|YP_004359489.1| NusB antitermination factor [Burkholderia gladioli BSR3]
 gi|327368177|gb|AEA59533.1| NusB antitermination factor [Burkholderia gladioli BSR3]
          Length = 144

 Score = 50.8 bits (120), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 42/147 (28%), Positives = 63/147 (42%), Gaps = 14/147 (9%)

Query: 10  LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF 69
           +K S RR  +R  A Q LYQ  +   ST EI           D +L     Y   D E  
Sbjct: 1   MKKSARRQ-SRELATQGLYQWLLSNASTGEI-----------DAQLRGAQGYEKADRELL 48

Query: 70  RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISE 129
             I++GV+  ++H DL             +L  +  ++L     EL      P  V+I+E
Sbjct: 49  ETIVYGVV--REHADLAAILAPNLDRPIEQLSPVERAVLLMATFELKHQIETPYRVVINE 106

Query: 130 YVCIAHDFFYGDEPKFINAVLDKVSRK 156
            + +   F   D  K++N VLDK++ K
Sbjct: 107 AIELTKTFGGSDGHKYVNGVLDKLALK 133


>gi|227503547|ref|ZP_03933596.1| transcription antitermination protein NusB [Corynebacterium
           accolens ATCC 49725]
 gi|227075583|gb|EEI13546.1| transcription antitermination protein NusB [Corynebacterium
           accolens ATCC 49725]
          Length = 211

 Score = 50.8 bits (120), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 28/89 (31%), Positives = 47/89 (52%)

Query: 67  EWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVI 126
           ++ +VI+ GV +    ID  IS  L++ W   R+  +  +ILR  V EL+    VP    
Sbjct: 62  DYTKVIVQGVAEELDAIDDTISRYLSQNWELHRIPAVDRAILRLSVWELLFNPDVPTATA 121

Query: 127 ISEYVCIAHDFFYGDEPKFINAVLDKVSR 155
           + E V +A  + +     +I+AVLD V++
Sbjct: 122 VVEGVELASQYSHDQAAPYIHAVLDDVAQ 150


>gi|188526813|ref|YP_001909500.1| transcription antitermination protein NusB [Helicobacter pylori
           Shi470]
 gi|217033802|ref|ZP_03439227.1| hypothetical protein HP9810_877g6 [Helicobacter pylori 98-10]
 gi|254778739|ref|YP_003056844.1| transcription antitermination protein NusB [Helicobacter pylori
           B38]
 gi|238691960|sp|B2UW05|NUSB_HELPS RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|188143053|gb|ACD47470.1| transcription antitermination protein NusB [Helicobacter pylori
           Shi470]
 gi|216943700|gb|EEC23143.1| hypothetical protein HP9810_877g6 [Helicobacter pylori 98-10]
 gi|254000650|emb|CAX28559.1| N utilization substance protein B homolog (Protein nusB),
           transcriptional antitermination factor [Helicobacter
           pylori B38]
 gi|261837458|gb|ACX97224.1| N utilization substance protein B/transcriptional antitermination
           factor [Helicobacter pylori 51]
 gi|297379224|gb|ADI34111.1| transcription antitermination factor NusB [Helicobacter pylori
           v225d]
 gi|308061306|gb|ADO03194.1| transcription antitermination protein NusB [Helicobacter pylori
           Cuz20]
 gi|308062871|gb|ADO04758.1| transcription antitermination protein NusB [Helicobacter pylori
           Sat464]
 gi|315585992|gb|ADU40373.1| transcription antitermination factor NusB [Helicobacter pylori 35A]
 gi|317008681|gb|ADU79261.1| transcription antitermination protein NusB [Helicobacter pylori
           India7]
 gi|317178310|dbj|BAJ56098.1| transcription antitermination protein NusB [Helicobacter pylori
           F30]
 gi|317181291|dbj|BAJ59075.1| transcription antitermination protein NusB [Helicobacter pylori
           F57]
 gi|332672789|gb|AEE69606.1| transcription antitermination factor NusB [Helicobacter pylori 83]
          Length = 138

 Score = 50.8 bits (120), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 41/141 (29%), Positives = 68/141 (48%), Gaps = 13/141 (9%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           R  AR A V+ LY  +          S  E  +  A + L+ + +  +  L +   + +G
Sbjct: 4   RTQARGAVVELLYAFE----------SGNEEIKKIASSMLEEKKIK-NNQLAFALSLFNG 52

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
           V+++   ID LI   L + W F RL  +  +ILR G  E I        +II+E + +  
Sbjct: 53  VLEKINEIDALIEPHLKD-WDFKRLGSMEKAILRLGAYE-IGFTPTQNPIIINECIELGK 110

Query: 136 DFFYGDEPKFINAVLDKVSRK 156
            +   + PKF+NA+LD +S+K
Sbjct: 111 LYAEPNTPKFLNAILDSLSKK 131


>gi|329938937|ref|ZP_08288311.1| Transcription termination protein NusB [Streptomyces
           griseoaurantiacus M045]
 gi|329301822|gb|EGG45715.1| Transcription termination protein NusB [Streptomyces
           griseoaurantiacus M045]
          Length = 142

 Score = 50.8 bits (120), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 34/148 (22%), Positives = 66/148 (44%), Gaps = 10/148 (6%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           R  AR  A Q L++ D  G     +++++ +       +  V    +         ++ G
Sbjct: 4   RNTARKRAFQILFEGDQRGADVLTVLADWVSLSRSDTRQPPVSEYTMQ--------LVEG 55

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
             +    ID L++      W+  R+ ++  +ILR G  ELI     P  V++ E V +A 
Sbjct: 56  YAEHVTRIDELLAQYAV-GWTLDRMPVVDRNILRLGAYELIWVDETPDAVVLDEMVQLAK 114

Query: 136 DFFYGDEPKFINAVLDKVSR-KEEIKRS 162
           +F   + P F+N +L ++   K  ++R+
Sbjct: 115 EFSTDESPGFVNGLLGRLKELKPSLRRA 142


>gi|325690389|gb|EGD32393.1| N utilization substance protein B [Streptococcus sanguinis SK115]
          Length = 143

 Score = 50.8 bits (120), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 42/149 (28%), Positives = 71/149 (47%), Gaps = 17/149 (11%)

Query: 9   DLKLSHRRGIARLAAVQAL----YQIDII-GCSTTEIISEYETYRFCADTELDVESVYLH 63
           D+ L  RRG+ R  A QAL    Y+ D++  C       + E    C   E D+ +  L+
Sbjct: 3   DILLESRRGL-RQRAFQALMSLEYEGDLVEACRFAYSYDKDEEA--CKAAEADIPAFLLN 59

Query: 64  VDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPV 123
                   ++ GV+  K  +D  I+  L + W+  RL ++  +ILR G+ E+ E  + P 
Sbjct: 60  --------LVSGVVQSKDDLDKKIAQHLKKGWTVDRLTLVEKNILRLGIFEITEFDT-PQ 110

Query: 124 EVIISEYVCIAHDFFYGDEPKFINAVLDK 152
            V ++E + ++  F      KFIN +L +
Sbjct: 111 LVAVNEAIELSKQFSDEKSSKFINGILSQ 139


>gi|238026450|ref|YP_002910681.1| transcription antitermination protein NusB [Burkholderia glumae
           BGR1]
 gi|237875644|gb|ACR27977.1| NusB antitermination factor [Burkholderia glumae BGR1]
          Length = 145

 Score = 50.8 bits (120), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 44/149 (29%), Positives = 67/149 (44%), Gaps = 18/149 (12%)

Query: 10  LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF 69
           +K S RR  +R  A Q LYQ  +   ST EI           D +L     Y   D E  
Sbjct: 1   MKKSARRQ-SRELATQGLYQWLLSNASTGEI-----------DAQLRGAQGYDKADRELL 48

Query: 70  RVIIHGVMDRKQHIDL--LISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVII 127
             I++GV+  ++H DL  +++ CL       +L  +  ++L     EL      P  V+I
Sbjct: 49  ETILYGVI--REHADLAAVLTPCLDR--PLEQLSPVERAVLLIATFELKHQIETPYRVVI 104

Query: 128 SEYVCIAHDFFYGDEPKFINAVLDKVSRK 156
           +E V +   F   D  K++N V DK++ K
Sbjct: 105 NEAVELTKTFGGSDGYKYVNGVADKLALK 133


>gi|227544393|ref|ZP_03974442.1| transcription antitermination protein NusB [Lactobacillus reuteri
           CF48-3A]
 gi|227185656|gb|EEI65727.1| transcription antitermination protein NusB [Lactobacillus reuteri
           CF48-3A]
          Length = 138

 Score = 50.8 bits (120), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 32/117 (27%), Positives = 54/117 (46%), Gaps = 7/117 (5%)

Query: 47  YRFCADTELDVESVY---LHVD----LEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSR 99
           +   +D E D+++VY    H D      +   +++GV + +  +D  I+  L   W+ +R
Sbjct: 17  FALQSDPEADIQTVYEAIPHHDEKQIPPYLLTLVNGVREHQDQLDEQINDLLASGWTINR 76

Query: 100 LDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRK 156
           L      ILR  + E+    +VP  V I+E + +   F      KFIN  L K  R+
Sbjct: 77  LAKPDLVILRLALFEIQYAENVPTVVAINEALELTKTFSSDKSRKFINGALGKFERQ 133


>gi|15611072|ref|NP_222723.1| transcription antitermination protein NusB [Helicobacter pylori
           J99]
 gi|7387981|sp|Q9ZN57|NUSB_HELPJ RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|4154504|gb|AAD05585.1| TRANSCRIPTION TERMINATION [Helicobacter pylori J99]
          Length = 138

 Score = 50.8 bits (120), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 41/141 (29%), Positives = 68/141 (48%), Gaps = 13/141 (9%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           R  AR A V+ LY  +          S  E  +  A + L+ + +  +  L +   + +G
Sbjct: 4   RTQARGAVVELLYAFE----------SGNEEIKKIASSMLEEKKIK-NNQLAFALSLFNG 52

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
           V+++   ID LI   L + W F RL  +  +ILR G  E I        +II+E + +  
Sbjct: 53  VLEKINEIDALIEPHLKD-WDFKRLGSMEKAILRLGAYE-IGFTPTQNPIIINECIELGK 110

Query: 136 DFFYGDEPKFINAVLDKVSRK 156
            +   + PKF+NA+LD +S+K
Sbjct: 111 LYAEPNTPKFLNAILDSLSKK 131


>gi|117928511|ref|YP_873062.1| NusB antitermination factor [Acidothermus cellulolyticus 11B]
 gi|166215656|sp|A0LUG6|NUSB_ACIC1 RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|117648974|gb|ABK53076.1| NusB antitermination factor [Acidothermus cellulolyticus 11B]
          Length = 145

 Score = 50.8 bits (120), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 39/138 (28%), Positives = 64/138 (46%), Gaps = 14/138 (10%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           R  AR  A+  L++ D+      EI++++ T R  ADT +   +V L          + G
Sbjct: 4   RTKARKRALDVLFEADLRAADPLEILADH-TAR--ADTPVPEYAVRL----------VEG 50

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
           V   +  ID +I       W+  R+  +  +ILR  + EL+    VP  V+++E V +A 
Sbjct: 51  VAAHRAEIDRIIEQ-FAVGWTLQRMPTVDRNILRLAIYELLWVTEVPDAVVLAEAVKLAQ 109

Query: 136 DFFYGDEPKFINAVLDKV 153
           D    +   F+N VL  V
Sbjct: 110 DLSTAESAPFVNGVLAAV 127


>gi|90961508|ref|YP_535424.1| transcription antitermination protein NusB [Lactobacillus
           salivarius UCC118]
 gi|227890595|ref|ZP_04008400.1| transcription antitermination protein NusB [Lactobacillus
           salivarius ATCC 11741]
 gi|119390778|sp|Q1WUJ4|NUSB_LACS1 RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|90820702|gb|ABD99341.1| N utilization substance protein B [Lactobacillus salivarius UCC118]
 gi|227867533|gb|EEJ74954.1| transcription antitermination protein NusB [Lactobacillus
           salivarius ATCC 11741]
          Length = 131

 Score = 50.8 bits (120), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 27/86 (31%), Positives = 47/86 (54%), Gaps = 1/86 (1%)

Query: 65  DLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVE 124
           DL +   ++ GV+D +  ID+ I+  L + W+  RL+     ILR  + E I+   V  +
Sbjct: 43  DLSYLNELVDGVLDHQSEIDMEITKYLRKNWNIGRLNKTDLIILRIAIFE-IKYSDVASK 101

Query: 125 VIISEYVCIAHDFFYGDEPKFINAVL 150
           + ++E V +A +F      KF+NA+L
Sbjct: 102 IAVNEAVELAKEFSDDKSYKFVNAIL 127


>gi|301300970|ref|ZP_07207135.1| transcription antitermination factor NusB [Lactobacillus salivarius
           ACS-116-V-Col5a]
 gi|300851437|gb|EFK79156.1| transcription antitermination factor NusB [Lactobacillus salivarius
           ACS-116-V-Col5a]
          Length = 131

 Score = 50.8 bits (120), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 27/86 (31%), Positives = 47/86 (54%), Gaps = 1/86 (1%)

Query: 65  DLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVE 124
           DL +   ++ GV+D +  ID+ I+  L + W+  RL+     ILR  + E I+   V  +
Sbjct: 43  DLSYLNELVDGVLDHQSEIDMEITKYLRKNWNIGRLNKTDLIILRIAIFE-IKYSDVASK 101

Query: 125 VIISEYVCIAHDFFYGDEPKFINAVL 150
           + ++E V +A +F      KF+NA+L
Sbjct: 102 IAVNEAVELAKEFSDDKSYKFVNAIL 127


>gi|260772216|ref|ZP_05881132.1| transcription termination protein NusB [Vibrio metschnikovii CIP
           69.14]
 gi|260611355|gb|EEX36558.1| transcription termination protein NusB [Vibrio metschnikovii CIP
           69.14]
          Length = 156

 Score = 50.8 bits (120), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 41/152 (26%), Positives = 70/152 (46%), Gaps = 14/152 (9%)

Query: 10  LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEY-------ETYRFCADTELDVESVYL 62
           +K + RR  AR  A+QA+Y   I   +   I  ++       E     A+  L       
Sbjct: 5   VKPAARRN-ARQFALQAIYSWQITKENVATIEEQFLSGGKYDEEEHHAAEPALSAP---- 59

Query: 63  HVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVP 122
             D+ +FR ++ GV+     +D  +   ++       LDM+  ++LR  + E+     VP
Sbjct: 60  QTDVTYFRDLLVGVVLNHTELDSKLRPFVSR--PMQDLDMMELALLRLAMYEMTRREDVP 117

Query: 123 VEVIISEYVCIAHDFFYGDEPKFINAVLDKVS 154
            +V+I+E + +A  F   D  KF+N VLDK +
Sbjct: 118 YKVVINEAIELAKVFAAEDSHKFVNGVLDKAA 149


>gi|304312173|ref|YP_003811771.1| N utilization substance protein B, transcription termination factor
           [gamma proteobacterium HdN1]
 gi|301797906|emb|CBL46128.1| N utilization substance protein B, transcription termination factor
           [gamma proteobacterium HdN1]
          Length = 136

 Score = 50.4 bits (119), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 29/93 (31%), Positives = 50/93 (53%), Gaps = 2/93 (2%)

Query: 64  VDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPV 123
            D+ +F  ++HGV      +D  IS  L  +   + LD +  +ILR    EL++   +P 
Sbjct: 22  TDVAYFHELLHGVPSCVADLDSAISPFLDRE--ITELDQVERAILRLATYELLKRQDIPY 79

Query: 124 EVIISEYVCIAHDFFYGDEPKFINAVLDKVSRK 156
            V I+E + +A  F   +  K++N VLDKV+++
Sbjct: 80  RVAINEGIELAKTFGATESHKYVNGVLDKVAQR 112


>gi|229168926|ref|ZP_04296643.1| N utilization substance protein B [Bacillus cereus AH621]
 gi|228614518|gb|EEK71626.1| N utilization substance protein B [Bacillus cereus AH621]
          Length = 114

 Score = 50.4 bits (119), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 29/87 (33%), Positives = 45/87 (51%), Gaps = 1/87 (1%)

Query: 67  EWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVI 126
           E+   ++ G +D K+ ID  I   L +KW   R+ ++  SILR  V E+     +P  V 
Sbjct: 25  EFLESLVVGFVDNKEEIDAAIRQNL-KKWKLERISIVDRSILRVAVCEMKYMEEIPHNVT 83

Query: 127 ISEYVCIAHDFFYGDEPKFINAVLDKV 153
           I+E + IA  F   +  +FIN VL  +
Sbjct: 84  INEAIEIAKTFGDEESRRFINGVLSNI 110


>gi|166030414|ref|ZP_02233243.1| hypothetical protein DORFOR_00075 [Dorea formicigenerans ATCC
           27755]
 gi|166029772|gb|EDR48529.1| hypothetical protein DORFOR_00075 [Dorea formicigenerans ATCC
           27755]
          Length = 132

 Score = 50.4 bits (119), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 35/118 (29%), Positives = 59/118 (50%), Gaps = 10/118 (8%)

Query: 46  TYRFCADTELDVE-SVYLHV--------DLEWFRVIIHGVMDRKQHIDLLISSCLTEKWS 96
           +Y F +D E+  +  +Y           D+ + R     V+ + + ID +++  +T  W 
Sbjct: 16  SYEFNSDQEMPQQMQLYFEQLDQEPKEEDMAYIRDKALNVILKSEEIDEMLNEHVT-GWK 74

Query: 97  FSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVS 154
            SR++ +  SILR  V E+     VPV V I+E V +A  +   + P FIN VL ++S
Sbjct: 75  TSRMNKVDLSILRLAVYEMKYDEDVPVGVAINEAVELAKKYSGDEGPAFINGVLARLS 132


>gi|149008214|ref|ZP_01831709.1| transcription antitermination protein NusB [Streptococcus
           pneumoniae SP18-BS74]
 gi|307126646|ref|YP_003878677.1| transcription antitermination factor NusB [Streptococcus pneumoniae
           670-6B]
 gi|147760358|gb|EDK67339.1| transcription antitermination protein NusB [Streptococcus
           pneumoniae SP18-BS74]
 gi|306483708|gb|ADM90577.1| transcription antitermination factor NusB [Streptococcus pneumoniae
           670-6B]
 gi|332076876|gb|EGI87338.1| transcription antitermination factor NusB [Streptococcus pneumoniae
           GA17545]
          Length = 140

 Score = 50.4 bits (119), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 30/99 (30%), Positives = 51/99 (51%), Gaps = 2/99 (2%)

Query: 61  YLHVDLEWFRV-IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECH 119
           Y  V L  F + ++ GV  +K+ +D  I+  L   W+  RL ++  ++LR GV E I   
Sbjct: 43  YTDVQLPAFLIDLVSGVQAKKEELDKQITQHLKAGWTIERLTLVERNLLRLGVFE-ITSF 101

Query: 120 SVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEE 158
             P  V ++E + +A DF      +FIN +L +   +E+
Sbjct: 102 DTPQLVAVNEAIELAKDFSDQKSARFINGLLSQFVTEEQ 140


>gi|109897640|ref|YP_660895.1| NusB antitermination factor [Pseudoalteromonas atlantica T6c]
 gi|119390797|sp|Q15W97|NUSB_PSEA6 RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|109699921|gb|ABG39841.1| NusB antitermination factor [Pseudoalteromonas atlantica T6c]
          Length = 140

 Score = 50.4 bits (119), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 44/143 (30%), Positives = 64/143 (44%), Gaps = 14/143 (9%)

Query: 10  LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF 69
           +K + RR  AR  AVQA+Y   +      +I     T     D           VD E+F
Sbjct: 1   MKPAARRK-ARELAVQAVYSWQMSKNPLDQIELSIVTSNNMQD-----------VDTEYF 48

Query: 70  RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISE 129
             ++  V+ R   +D  I   L        LD +  +ILR    EL+E   VP +V+I+E
Sbjct: 49  LELLRAVVRRTAELDAKIKPYLGR--LPEELDPVENAILRLATYELVERIDVPYKVVINE 106

Query: 130 YVCIAHDFFYGDEPKFINAVLDK 152
            + +A  F   +  KF+N VLDK
Sbjct: 107 AIELAKSFGAEESHKFVNGVLDK 129


>gi|125973352|ref|YP_001037262.1| NusB antitermination factor [Clostridium thermocellum ATCC 27405]
 gi|256005458|ref|ZP_05430421.1| NusB antitermination factor [Clostridium thermocellum DSM 2360]
 gi|281417552|ref|ZP_06248572.1| NusB antitermination factor [Clostridium thermocellum JW20]
 gi|166215686|sp|A3DDP0|NUSB_CLOTH RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|125713577|gb|ABN52069.1| NusB antitermination factor [Clostridium thermocellum ATCC 27405]
 gi|255990598|gb|EEU00717.1| NusB antitermination factor [Clostridium thermocellum DSM 2360]
 gi|281408954|gb|EFB39212.1| NusB antitermination factor [Clostridium thermocellum JW20]
 gi|316940416|gb|ADU74450.1| NusB antitermination factor [Clostridium thermocellum DSM 1313]
          Length = 145

 Score = 50.4 bits (119), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 37/139 (26%), Positives = 64/139 (46%), Gaps = 14/139 (10%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISE-YETYRFCADTELDVESVYLHVDLEWFRVIIH 74
           R  +R  A++ +YQ++I   S  E I+   E Y    +            D E+   ++ 
Sbjct: 3   RRASREIAMKLIYQLEIQKDSREEQINNTLEQYDLNEN------------DREYILDVVK 50

Query: 75  GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134
           GV   ++ ID  I    ++ W  SR+  +  +ILR  + E+     +P  V I+E V +A
Sbjct: 51  GVFKNQEEIDGTIEK-FSKGWKLSRISKVDLAILRLAIYEMCHRDDIPFTVAINEAVELA 109

Query: 135 HDFFYGDEPKFINAVLDKV 153
            ++   +   FIN +L KV
Sbjct: 110 KNYSGEESGSFINGILGKV 128


>gi|257463858|ref|ZP_05628244.1| transcription antitermination protein NusB [Fusobacterium sp. D12]
 gi|317061389|ref|ZP_07925874.1| N utilization substance protein B [Fusobacterium sp. D12]
 gi|313687065|gb|EFS23900.1| N utilization substance protein B [Fusobacterium sp. D12]
          Length = 138

 Score = 50.4 bits (119), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 47/145 (32%), Positives = 77/145 (53%), Gaps = 17/145 (11%)

Query: 11  KLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFR 70
           K++ R   AR    + ++Q +I G S  E   EY + R     E++ + V   + LE +R
Sbjct: 4   KMTRRE--AREELFKWIFQTEIQGNSM-EKAFEYSSLR----EEIEKDEV-TKLFLERYR 55

Query: 71  VIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEY 130
               G+ + ++ I+  I + +T+ W FSR+  +  S+L+  V E+     +PVE+I++E 
Sbjct: 56  ---KGLAEHREEIETKIQAAMTD-WDFSRIGYVEKSLLKLAVYEMY-FEDLPVEIIVNEA 110

Query: 131 VCIAHDFFYGD--EPKFINAVLDKV 153
           V IA    YGD    +FIN VL KV
Sbjct: 111 VEIAK--IYGDVKTHEFINGVLAKV 133


>gi|320540317|ref|ZP_08039969.1| transcription antitermination protein [Serratia symbiotica str.
           Tucson]
 gi|320029637|gb|EFW11664.1| transcription antitermination protein [Serratia symbiotica str.
           Tucson]
          Length = 138

 Score = 50.4 bits (119), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 40/132 (30%), Positives = 62/132 (46%), Gaps = 13/132 (9%)

Query: 23  AVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQH 82
           AVQALY   +      ++      ++F   TE DV  V    D+ +FR +  GV      
Sbjct: 13  AVQALYSWQLSKNDIADV-----EHQFL--TEQDVNGV----DIAYFRELFSGVAVNAGM 61

Query: 83  IDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDE 142
           +D L+   L+ +     L  +  ++LR  + EL     VP +V I+E + +A  F   D 
Sbjct: 62  LDTLMVPYLSRQ--LDELGQVERAVLRIALFELKMREDVPYKVAINEAIELAKTFGAEDS 119

Query: 143 PKFINAVLDKVS 154
            KF+N VLDK +
Sbjct: 120 HKFVNGVLDKAA 131


>gi|253990956|ref|YP_003042312.1| transcription antitermination protein NusB [Photorhabdus
           asymbiotica subsp. asymbiotica ATCC 43949]
 gi|253782406|emb|CAQ85570.1| N utilization substance protein B [Photorhabdus asymbiotica]
          Length = 139

 Score = 50.4 bits (119), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 39/130 (30%), Positives = 63/130 (48%), Gaps = 13/130 (10%)

Query: 23  AVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQH 82
           AVQA+Y   + G    ++  ++ +       E DV  V    D+ +FR ++ GV      
Sbjct: 13  AVQAIYSWQLSGNDIADVELQFLS-------EQDVTGV----DVTYFRELLSGVAVNAVK 61

Query: 83  IDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDE 142
           +D L++  L+ +     L  +  +ILR  + EL     VP +V I+E + +A  F   D 
Sbjct: 62  LDALMAPYLSRQ--LEELGQVEKAILRVAMFELSYRDDVPYKVAINEAIELAKVFGAEDS 119

Query: 143 PKFINAVLDK 152
            KF+N VLDK
Sbjct: 120 HKFVNGVLDK 129


>gi|209694495|ref|YP_002262423.1| transcription antitermination protein NusB [Aliivibrio salmonicida
           LFI1238]
 gi|238055348|sp|B6EIA0|NUSB_ALISL RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|208008446|emb|CAQ78611.1| N utilization substance protein B (protein NusB) [Aliivibrio
           salmonicida LFI1238]
          Length = 155

 Score = 50.4 bits (119), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 41/148 (27%), Positives = 69/148 (46%), Gaps = 6/148 (4%)

Query: 10  LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHV---DL 66
           +K + RR  AR  A+QA+Y   I   +   I  ++ T     + E   +   L     D+
Sbjct: 5   VKPAARRN-ARQFALQAIYSWQISKENVAAIEEQFLTADKYDEEEHHAKEPKLQAPETDV 63

Query: 67  EWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVI 126
            +FR +  GV      +D  +   L+       LD +  ++LR  + E++    VP +V+
Sbjct: 64  AYFRDLFSGVALNHIKLDGKMRPYLSR--PLQDLDQMELALLRMSIYEMMNRDDVPYKVV 121

Query: 127 ISEYVCIAHDFFYGDEPKFINAVLDKVS 154
           I+E + +A  F   D  KF+N VLDK +
Sbjct: 122 INEAIELAKVFAAEDSHKFVNGVLDKAA 149


>gi|301156187|emb|CBW15658.1| transcription antitermination protein [Haemophilus parainfluenzae
           T3T1]
          Length = 145

 Score = 50.4 bits (119), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 46/144 (31%), Positives = 66/144 (45%), Gaps = 14/144 (9%)

Query: 11  KLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFR 70
           K+S RR  AR  AVQALY   + G +  ++        F  D +L        VD  +F 
Sbjct: 10  KVSPRRR-ARECAVQALYSWALSGNAPEQV-----ELTFVVDQDLK------GVDKPYFS 57

Query: 71  VIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEY 130
            +    +     +D  +S  L    +   LD I  +ILR  V EL     VP +V I+E 
Sbjct: 58  RLFRQTVANVDSVDFSMSHYLDR--TLDELDPIEKAILRLAVYELQFEPDVPYKVAINEA 115

Query: 131 VCIAHDFFYGDEPKFINAVLDKVS 154
           + +A  F   +  K+IN VLDKV+
Sbjct: 116 IEVAKVFGADESHKYINGVLDKVA 139


>gi|257875394|ref|ZP_05655047.1| antitermination protein NusB [Enterococcus casseliflavus EC20]
 gi|257809560|gb|EEV38380.1| antitermination protein NusB [Enterococcus casseliflavus EC20]
          Length = 154

 Score = 50.4 bits (119), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 29/91 (31%), Positives = 48/91 (52%)

Query: 72  IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
           ++ GV   K+ +D +I S L   W   RL  +  +ILR  + E+I   +VP  V ++E +
Sbjct: 60  LVAGVCHYKEALDEVIQSHLKSGWKIQRLSKMDVTILRIALYEMIYVDNVPNRVALNEAI 119

Query: 132 CIAHDFFYGDEPKFINAVLDKVSRKEEIKRS 162
            +A  F      KF+N +L  V+++ E K S
Sbjct: 120 ELAKTFSDDQSRKFVNGILSTVNQELETKAS 150


>gi|107022034|ref|YP_620361.1| transcription antitermination protein NusB [Burkholderia
           cenocepacia AU 1054]
 gi|116688978|ref|YP_834601.1| transcription antitermination protein NusB [Burkholderia
           cenocepacia HI2424]
 gi|170732269|ref|YP_001764216.1| transcription antitermination protein NusB [Burkholderia
           cenocepacia MC0-3]
 gi|206561400|ref|YP_002232165.1| transcription antitermination protein NusB [Burkholderia
           cenocepacia J2315]
 gi|254246083|ref|ZP_04939404.1| Transcription termination factor [Burkholderia cenocepacia PC184]
 gi|119372281|sp|Q1BYB7|NUSB_BURCA RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|166215666|sp|A0K5D1|NUSB_BURCH RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|238688594|sp|B1JX75|NUSB_BURCC RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|238693104|sp|B4EBT9|NUSB_BURCJ RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|105892223|gb|ABF75388.1| NusB antitermination factor [Burkholderia cenocepacia AU 1054]
 gi|116647067|gb|ABK07708.1| NusB antitermination factor [Burkholderia cenocepacia HI2424]
 gi|124870859|gb|EAY62575.1| Transcription termination factor [Burkholderia cenocepacia PC184]
 gi|169815511|gb|ACA90094.1| NusB antitermination factor [Burkholderia cenocepacia MC0-3]
 gi|198037442|emb|CAR53377.1| probable N utilization substance protein B [Burkholderia
           cenocepacia J2315]
          Length = 145

 Score = 50.4 bits (119), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 43/147 (29%), Positives = 65/147 (44%), Gaps = 14/147 (9%)

Query: 10  LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF 69
           +K S RR  +R  A Q LYQ  +    + EI           D +L     Y   D E  
Sbjct: 1   MKKSARR-QSRELATQGLYQWLLSNAPSGEI-----------DAQLRGALGYDKADKELL 48

Query: 70  RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISE 129
             I+HGV+  ++H  L+ +   +      +L  +  ++L     EL      P  VII+E
Sbjct: 49  EAILHGVI--REHATLVEALAPSLDRPIDQLSPVERAVLLIATFELTHHVETPYRVIINE 106

Query: 130 YVCIAHDFFYGDEPKFINAVLDKVSRK 156
            V +A  F   D  K++N VLDK++ K
Sbjct: 107 AVELAKTFGGSDGYKYVNGVLDKLAAK 133


>gi|15902434|ref|NP_357984.1| transcription antitermination protein NusB [Streptococcus
           pneumoniae R6]
 gi|183603887|ref|ZP_02722699.2| transcription antitermination factor NusB [Streptococcus pneumoniae
           MLV-016]
 gi|15457952|gb|AAK99194.1| Transcription termination protein [Streptococcus pneumoniae R6]
 gi|183577498|gb|EDT98026.1| transcription antitermination factor NusB [Streptococcus pneumoniae
           MLV-016]
          Length = 146

 Score = 50.4 bits (119), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 34/117 (29%), Positives = 55/117 (47%), Gaps = 8/117 (6%)

Query: 49  FCADTELDVESVYLH------VDLEWFRV-IIHGVMDRKQHIDLLISSCLTEKWSFSRLD 101
           F  D E      Y H      V L  F + ++ GV  +K+ +D  I+  L   W+  RL 
Sbjct: 31  FGTDVETACRFAYTHDREDTDVQLPAFLIDLVSGVQAKKEELDKQITQHLKAGWTIERLT 90

Query: 102 MILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEE 158
           ++  ++LR GV E I     P  V ++E + +A DF      +FIN +L +   +E+
Sbjct: 91  LVERNLLRLGVFE-ITSFDTPQLVAVNEAIELAKDFSDQKSARFINGLLSQFVTEEQ 146


>gi|328945778|gb|EGG39929.1| N utilization substance protein B [Streptococcus sanguinis SK1087]
          Length = 143

 Score = 50.4 bits (119), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 42/146 (28%), Positives = 71/146 (48%), Gaps = 11/146 (7%)

Query: 9   DLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYL-HVDLE 67
           D+ L  RRG+ R  A QAL  ++  G          E  RF    + D E+  +   D+ 
Sbjct: 3   DILLESRRGL-RQRAFQALMSLEYEGDLV-------EACRFAYSYDKDEEADKVAEADIP 54

Query: 68  WFRV-IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVI 126
            F + ++ GV+  K  +D  I+  L + W+  RL ++  +ILR G+ E+ E  + P  V 
Sbjct: 55  AFLLNLVSGVVQSKDDLDKKIAQHLKKGWTVDRLTLVEKNILRLGIFEITEFDT-PQLVA 113

Query: 127 ISEYVCIAHDFFYGDEPKFINAVLDK 152
           ++E + ++  F      KFIN +L +
Sbjct: 114 VNEAIELSKQFSDEKSSKFINGILSQ 139


>gi|260903826|ref|ZP_05912148.1| NusB antitermination factor [Brevibacterium linens BL2]
          Length = 121

 Score = 50.4 bits (119), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 25/82 (30%), Positives = 44/82 (53%), Gaps = 1/82 (1%)

Query: 72  IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
           I+ G+   ++ ID +I++   E W+  R+  +  ++L+ G  E+I    VP +  I E V
Sbjct: 33  IVEGITSHREEIDEIIATY-AEGWTLERMPAVDLALLQIGTWEIIFNDEVPDKAAIDEAV 91

Query: 132 CIAHDFFYGDEPKFINAVLDKV 153
            +A  F   D P FI+ +L +V
Sbjct: 92  SLARQFSTDDSPGFISGLLSRV 113


>gi|157369317|ref|YP_001477306.1| transcription antitermination protein NusB [Serratia proteamaculans
           568]
 gi|166918812|sp|A8GAN8|NUSB_SERP5 RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|157321081|gb|ABV40178.1| NusB antitermination factor [Serratia proteamaculans 568]
          Length = 138

 Score = 50.4 bits (119), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 40/132 (30%), Positives = 66/132 (50%), Gaps = 13/132 (9%)

Query: 23  AVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQH 82
           AVQALY   +      ++      ++F   +E DV+ V    D+ +FR ++ GV      
Sbjct: 13  AVQALYSWQLSKNDIADV-----EHQFL--SEQDVKDV----DIVYFRELLSGVAVNAGL 61

Query: 83  IDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDE 142
           +D L++  L+ +     L  +  ++LR  + EL     VP +V I+E + +A  F   D 
Sbjct: 62  LDSLMAPVLSRQ--LEELGQVERAVLRIALYELKMREDVPYKVAINEAIELAKTFGAEDS 119

Query: 143 PKFINAVLDKVS 154
            KF+N VLDKV+
Sbjct: 120 HKFVNGVLDKVA 131


>gi|42522647|ref|NP_968027.1| transcription termination factor nusB [Bdellovibrio bacteriovorus
           HD100]
 gi|81617954|sp|Q6MNX9|NUSB_BDEBA RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|39575179|emb|CAE79020.1| transcription termination factor nusB [Bdellovibrio bacteriovorus
           HD100]
          Length = 135

 Score = 50.4 bits (119), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 46/149 (30%), Positives = 70/149 (46%), Gaps = 19/149 (12%)

Query: 10  LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISE--YETYRFCADTELDVESVYLHVDLE 67
           +KL+ RR  AR  A+Q L+Q        TE   +  Y+T+    +  LD E V  + DL 
Sbjct: 1   MKLTARRQ-ARELALQVLFQ--------TEFAPQISYQTFLEVFEQSLDPE-VITYADL- 49

Query: 68  WFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLEL-IECHSVPVEVI 126
               I+ GV   K+ ID  I +  +  W   R+  I  +ILR  V E+      +   + 
Sbjct: 50  ----IVTGVKSNKEAIDSKIQAS-SAHWKVERMATIDRNILRIAVYEMRFAADPIKENIA 104

Query: 127 ISEYVCIAHDFFYGDEPKFINAVLDKVSR 155
           I+E V IA  +   D   F+N +LD+V +
Sbjct: 105 INEAVEIAKKYGTSDSGSFVNGLLDQVGK 133


>gi|218781155|ref|YP_002432473.1| NusB antitermination factor [Desulfatibacillum alkenivorans AK-01]
 gi|226738896|sp|B8FJ78|NUSB_DESAA RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|218762539|gb|ACL05005.1| NusB antitermination factor [Desulfatibacillum alkenivorans AK-01]
          Length = 143

 Score = 50.4 bits (119), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 36/140 (25%), Positives = 62/140 (44%), Gaps = 14/140 (10%)

Query: 15  RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDL-EWFRVII 73
           +R  AR  A+Q+L+ +D       E +       FC       ++     DL ++F  + 
Sbjct: 3   KRRRARELALQSLFYVDSTSAPPLEALD-----LFC-------QNFPPPKDLAQFFYELA 50

Query: 74  HGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCI 133
            GV++ +  ID LI    +  W   R+  +  +++R    E + C  VP  V I+E + I
Sbjct: 51  KGVINNQDEIDRLIEQH-SNNWKLYRMSAVDLNLMRIAAYEFLFCPDVPRRVSINEAIDI 109

Query: 134 AHDFFYGDEPKFINAVLDKV 153
              F   +   FIN +LD +
Sbjct: 110 GKRFGTAESGAFINGILDSI 129


>gi|33151658|ref|NP_873011.1| transcription antitermination protein NusB [Haemophilus ducreyi
           35000HP]
 gi|39931811|sp|Q7VNQ2|NUSB_HAEDU RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|33147879|gb|AAP95400.1| transcription termination factor [Haemophilus ducreyi 35000HP]
          Length = 137

 Score = 50.4 bits (119), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 48/145 (33%), Positives = 69/145 (47%), Gaps = 14/145 (9%)

Query: 10  LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF 69
           +K+S RR  AR  AVQALY   I   S  E+        F  D ++        VDL +F
Sbjct: 1   MKVSPRRR-ARECAVQALYSWYISQNSIEEV-----ELAFVTDQDMK------GVDLPYF 48

Query: 70  RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISE 129
           R ++ G     + ID  I   L    +   +D I  +ILR    EL     VP +V+I+E
Sbjct: 49  RKLLRGTALYVEAIDHDIRPYLDRMEN--DVDPIERTILRLATYELKYELDVPYKVVINE 106

Query: 130 YVCIAHDFFYGDEPKFINAVLDKVS 154
            + +A  F   D  K+IN +LDK++
Sbjct: 107 GIEVAKVFGSDDSHKYINGILDKLA 131


>gi|254518730|ref|ZP_05130786.1| NusB antitermination factor [Clostridium sp. 7_2_43FAA]
 gi|226912479|gb|EEH97680.1| NusB antitermination factor [Clostridium sp. 7_2_43FAA]
          Length = 134

 Score = 50.4 bits (119), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 42/140 (30%), Positives = 69/140 (49%), Gaps = 14/140 (10%)

Query: 15  RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74
            R  +R  A++ L+ + +   +  E I   ET  F  D E++++++    DLE+ + I+ 
Sbjct: 2   NRKRSREIAMELLFGMTLSKNTLEETI---ET--FIEDYEMNLKTI----DLEYIKGILA 52

Query: 75  GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134
            V +    ID  I   LT  W   R+  +  SILR  + E++    VP +V I+E + + 
Sbjct: 53  KVEENITVIDQKIEEALT-NWKIDRVSKVNISILRLAIAEMLYVEDVPEKVAINEAIELT 111

Query: 135 HDFFYGDEPK--FINAVLDK 152
               Y DE    F+N VLDK
Sbjct: 112 KK--YSDEKSVSFVNGVLDK 129


>gi|94676751|ref|YP_589030.1| transcription antitermination protein NusB [Baumannia
           cicadellinicola str. Hc (Homalodisca coagulata)]
 gi|119372277|sp|Q1LSN4|NUSB_BAUCH RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|94219901|gb|ABF14060.1| transcription antitermination factor NusB [Baumannia
           cicadellinicola str. Hc (Homalodisca coagulata)]
          Length = 139

 Score = 50.4 bits (119), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 42/145 (28%), Positives = 71/145 (48%), Gaps = 14/145 (9%)

Query: 10  LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF 69
           +K++ RR  AR  AVQALY   +   +  +I ++     F A  E D++ +    D+ +F
Sbjct: 1   MKITARRR-ARECAVQALYSWQLSNNNIADIEAQ-----FLA--EQDIKGI----DVAYF 48

Query: 70  RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISE 129
           R +  G       +D L+   L+      +L  +  ++LR  + EL +   +P  V I+E
Sbjct: 49  RELYSGTAIAADMLDQLMVPYLSR--PLDKLGHVERAVLRLALYELSKRQDIPYRVAINE 106

Query: 130 YVCIAHDFFYGDEPKFINAVLDKVS 154
            + +A  F   D  KFIN VL+K +
Sbjct: 107 AIELAKTFGAEDSYKFINGVLEKTA 131


>gi|322373691|ref|ZP_08048227.1| transcription antitermination factor NusB [Streptococcus sp. C150]
 gi|321278733|gb|EFX55802.1| transcription antitermination factor NusB [Streptococcus sp. C150]
          Length = 144

 Score = 50.4 bits (119), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 46/157 (29%), Positives = 72/157 (45%), Gaps = 30/157 (19%)

Query: 3   IQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISE-YETYRF----CADTELDV 57
            +D+++DL         R  A Q L+ ++  G    E++ + +  Y F      +TE+DV
Sbjct: 5   FKDSRRDL---------RERAFQTLFALEFGG----EVLEQAHFAYTFDKPIGEETEVDV 51

Query: 58  ESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIE 117
            +  L         ++ GV +    +D  I   L E WS SRL +   ++LR G+ E+  
Sbjct: 52  PAFLLS--------LVTGVREELAQLDSQIEEKLKEGWSLSRLIVTDRTLLRLGLYEITS 103

Query: 118 CHSVPVEVIISEYVCIAHDFFYGDE--PKFINAVLDK 152
               P  V I+E + IA    Y DE   KFIN VL +
Sbjct: 104 FEETPGRVAINEIIEIAKK--YSDETSAKFINGVLSQ 138


>gi|15675648|ref|NP_269822.1| transcription antitermination protein NusB [Streptococcus pyogenes
           M1 GAS]
 gi|22095965|sp|Q99Y88|NUSB_STRP1 RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|13622860|gb|AAK34543.1| putative transcriptional terminator [Streptococcus pyogenes M1 GAS]
          Length = 150

 Score = 50.4 bits (119), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 41/154 (26%), Positives = 76/154 (49%), Gaps = 21/154 (13%)

Query: 2   TIQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYE-TYRFCADTELDVESV 60
           + Q++++DL         R  A QAL+ I++      E+++  +  Y +   T  D + +
Sbjct: 4   SFQNSRRDL---------RERAFQALFNIEM----GAELLAASQFAYGYDKVTGEDAQVL 50

Query: 61  YLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHS 120
            L +   +   ++ GV + K+ +D LIS+ L + WS  RL +   ++LR G+ E+     
Sbjct: 51  ELPI---FLLSLVTGVNNHKEELDNLISTHLKKGWSLERLTLTDKTLLRLGLFEIKYFDK 107

Query: 121 VPVEVIISEYVCIAHDFFYGDE--PKFINAVLDK 152
            P  V ++E + +     Y DE   KFIN +L +
Sbjct: 108 TPDRVALNEIIEVVKK--YSDETSAKFINGLLSQ 139


>gi|302517963|ref|ZP_07270305.1| transcription antitermination factor NusB [Streptomyces sp. SPB78]
 gi|302426858|gb|EFK98673.1| transcription antitermination factor NusB [Streptomyces sp. SPB78]
          Length = 144

 Score = 50.4 bits (119), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 37/146 (25%), Positives = 69/146 (47%), Gaps = 10/146 (6%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           R  AR  A Q L++ D  G     +++++  +    DT+    S Y    +E    ++ G
Sbjct: 4   RNTARKRAFQILFEADQRGTDVLTVLADWVRHSRN-DTQQPPVSEYT---ME----LVEG 55

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
             +  + ID +I+    + W   R+ ++  +I+R G  EL+     P  V++ E V +A 
Sbjct: 56  YAEHARRIDEVIAKYSVD-WPLDRMPVVDRNIVRLGAHELVWVDGTPDAVVMDEAVELAK 114

Query: 136 DFFYGDEPKFINAVLDKVSR-KEEIK 160
           +F   D P F+N +L +    K E++
Sbjct: 115 EFSTDDSPAFVNGLLGRFKNLKPELR 140


>gi|225854005|ref|YP_002735517.1| transcription antitermination protein NusB [Streptococcus
           pneumoniae JJA]
 gi|254772660|sp|C1CCJ6|NUSB_STRZJ RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|225724174|gb|ACO20027.1| transcription antitermination factor NusB [Streptococcus pneumoniae
           JJA]
          Length = 140

 Score = 50.4 bits (119), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 34/117 (29%), Positives = 55/117 (47%), Gaps = 8/117 (6%)

Query: 49  FCADTELDVESVYLH------VDLEWFRV-IIHGVMDRKQHIDLLISSCLTEKWSFSRLD 101
           F  D E      Y H      V L  F + ++ GV  +K+ +D  I+  L   W+  RL 
Sbjct: 25  FGTDVETACRFAYTHDREDTAVQLPAFLIDLVSGVQAKKEELDKQITQHLKAGWTIERLT 84

Query: 102 MILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEE 158
           ++  ++LR GV E I     P  V ++E + +A DF      +FIN +L +   +E+
Sbjct: 85  LVERNLLRLGVFE-ITSFDTPQLVAVNEAIELAKDFSDQKSARFINGLLSQFVTEEQ 140


>gi|159897280|ref|YP_001543527.1| NusB antitermination factor [Herpetosiphon aurantiacus ATCC 23779]
 gi|254772643|sp|A9AXI5|NUSB_HERA2 RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|159890319|gb|ABX03399.1| NusB antitermination factor [Herpetosiphon aurantiacus ATCC 23779]
          Length = 146

 Score = 50.4 bits (119), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 39/150 (26%), Positives = 68/150 (45%), Gaps = 18/150 (12%)

Query: 12  LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71
           L HR    R AA+QAL+++D        +++     R   D     E        ++F  
Sbjct: 9   LRHR---VRAAALQALFELDQTTHDLDSVVA-----RISDDEMFSAEG------RDFFAR 54

Query: 72  IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELI---ECHSVPVEVIIS 128
           I++G    +Q ID LI+  +   W   ++  +  ++LR  + E++        PV+ +I+
Sbjct: 55  IVNGAWVNRQEIDDLIAK-IAPSWPVHQMPGVDIAVLRIALFEILYDAAADKAPVKAVIN 113

Query: 129 EYVCIAHDFFYGDEPKFINAVLDKVSRKEE 158
           E V +A  F   +  +F+N VL  V  K E
Sbjct: 114 EAVELAKHFGSDNSGRFVNGVLSTVVNKPE 143


>gi|332977564|gb|EGK14334.1| N utilization substance protein B [Desmospora sp. 8437]
          Length = 148

 Score = 50.4 bits (119), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 41/155 (26%), Positives = 68/155 (43%), Gaps = 20/155 (12%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDL-----EWFR 70
           R   R  A+Q LYQ +I                  AD  +  E+  LH +       +F 
Sbjct: 3   RRTVREKALQTLYQNEINPDG--------------ADRSMKKEARSLHDEAGEEASAFFL 48

Query: 71  VIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEY 130
            ++  V+     +D +I   L + W+ SRL  +  SILR  V EL+    +P    ++E 
Sbjct: 49  RLVRTVIRNMPRLDPVIQGYLKQDWTLSRLSPVDRSILRMAVCELLYEEEIPEGASLNEA 108

Query: 131 VCIAHDFFYGDEPKFINAVLDKVSRK-EEIKRSGC 164
           V +A  F   +  +FIN VL  + +  +E+++S  
Sbjct: 109 VELAKTFSTEESARFINGVLGSMVKNLDEVRKSAV 143


>gi|320160865|ref|YP_004174089.1| antitermination protein NusB [Anaerolinea thermophila UNI-1]
 gi|319994718|dbj|BAJ63489.1| antitermination protein NusB [Anaerolinea thermophila UNI-1]
          Length = 155

 Score = 50.4 bits (119), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 41/148 (27%), Positives = 71/148 (47%), Gaps = 15/148 (10%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF-RVIIH 74
           R  AR  A++ALY+ID+      +++ E             ++   L  +L  F R I+ 
Sbjct: 4   RTRARAVALEALYEIDLTNHLPGDVLEER------------IKDAKLQDELADFAREIVM 51

Query: 75  GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134
           GV+     +D+ I+    E W   ++ +I  +ILR  + E       PV+V I+E V +A
Sbjct: 52  GVLPITHQLDVQIAKHAPE-WPLDQVAVIDRNILRIALWEFAVGQCTPVKVAINEAVELA 110

Query: 135 HDFFYGDEPKFINAVLDKVS-RKEEIKR 161
             +      +F+N VL  ++ R+ EIK+
Sbjct: 111 KKYGSDSSARFVNGVLGSLADRETEIKQ 138


>gi|71892016|ref|YP_277746.1| transcription antitermination protein NusB [Candidatus Blochmannia
           pennsylvanicus str. BPEN]
 gi|119372278|sp|Q493G9|NUSB_BLOPB RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|71796122|gb|AAZ40873.1| L factor [Candidatus Blochmannia pennsylvanicus str. BPEN]
          Length = 144

 Score = 50.4 bits (119), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 42/145 (28%), Positives = 72/145 (49%), Gaps = 15/145 (10%)

Query: 12  LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71
           +S RR  AR   +QALY   +    +   + E E Y     TE D++      ++ +F  
Sbjct: 4   ISRRR--ARECTLQALYSWQV----SKNDVKEIERYVV---TEQDIQDC----NISYFHE 50

Query: 72  IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
           +  GV+   + +D L+   L+   +  +L  I  S+LR  + EL +C+ +P +V I+E +
Sbjct: 51  LYIGVISCAEELDKLMIPHLSR--NLEKLGYIEHSVLRIALFELTKCNDIPYKVAINEAI 108

Query: 132 CIAHDFFYGDEPKFINAVLDKVSRK 156
            +   F      KFIN VLDK++ +
Sbjct: 109 ELVKIFGAEKSHKFINGVLDKIANQ 133


>gi|89895110|ref|YP_518597.1| hypothetical protein DSY2364 [Desulfitobacterium hafniense Y51]
 gi|219669523|ref|YP_002459958.1| NusB antitermination factor [Desulfitobacterium hafniense DCB-2]
 gi|119390768|sp|Q24UY9|NUSB_DESHY RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|254772633|sp|B8FQ61|NUSB_DESHD RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|89334558|dbj|BAE84153.1| hypothetical protein [Desulfitobacterium hafniense Y51]
 gi|219539783|gb|ACL21522.1| NusB antitermination factor [Desulfitobacterium hafniense DCB-2]
          Length = 148

 Score = 50.4 bits (119), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 37/138 (26%), Positives = 68/138 (49%), Gaps = 10/138 (7%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           R +AR  A+Q L+Q+++ G S      +   +++  +  +   S+    +L        G
Sbjct: 3   RRLARETALQVLFQLEMTGESQD---LKSAIHKWADEFAVPEGSIPFAEEL------AEG 53

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
            +  K+ ID  +   L+E WS +R+  +  ++LR    E++    +P  V I+E + IA 
Sbjct: 54  TLTHKEVIDENLEK-LSEGWSLARMANVDRNLLRLASYEILFRKDIPGRVTINEAIEIAK 112

Query: 136 DFFYGDEPKFINAVLDKV 153
            +   +  KFIN +LDKV
Sbjct: 113 RYGSEESGKFINGILDKV 130


>gi|325963392|ref|YP_004241298.1| transcription antitermination factor NusB [Arthrobacter
           phenanthrenivorans Sphe3]
 gi|323469479|gb|ADX73164.1| transcription antitermination factor NusB [Arthrobacter
           phenanthrenivorans Sphe3]
          Length = 136

 Score = 50.4 bits (119), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 27/84 (32%), Positives = 45/84 (53%), Gaps = 1/84 (1%)

Query: 72  IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
           II GV+ ++  ID  + +  ++ WS  R+  +   ILR G  EL+    VP  V +SE V
Sbjct: 47  IIEGVVSQQTAIDEFLETY-SQGWSLERMPSVDRIILRIGTWELLYNDDVPDGVAVSEAV 105

Query: 132 CIAHDFFYGDEPKFINAVLDKVSR 155
            +A      + P+FIN +L ++ +
Sbjct: 106 ALAKTLSTDESPQFINGLLGRLQQ 129


>gi|309789561|ref|ZP_07684142.1| NusB antitermination factor [Oscillochloris trichoides DG6]
 gi|308228297|gb|EFO81944.1| NusB antitermination factor [Oscillochloris trichoides DG6]
          Length = 150

 Score = 50.4 bits (119), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 41/147 (27%), Positives = 68/147 (46%), Gaps = 17/147 (11%)

Query: 12  LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71
           L HR    R+AA+Q L+++D    +   I   YE  R   D EL  E         +   
Sbjct: 4   LRHR---VRIAALQVLFEVD---ATDHPIDVVYE--RRLVDEELPAEGE------RFLNQ 49

Query: 72  IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELI--ECHSVPVEVIISE 129
           I+ G  + + ++D +I       W  +++  +  +ILR  + EL+  E    PV+ +I+E
Sbjct: 50  IVFGSWEHRSYLDGVIEEA-APNWPVTQMPGVDKAILRIAIFELLIDEVEQTPVKAVINE 108

Query: 130 YVCIAHDFFYGDEPKFINAVLDKVSRK 156
            V +A  F   +  +FIN VL  V  +
Sbjct: 109 AVELAKHFGSDNSSRFINGVLGTVVNR 135


>gi|260767831|ref|ZP_05876766.1| transcription termination protein NusB [Vibrio furnissii CIP
           102972]
 gi|260617340|gb|EEX42524.1| transcription termination protein NusB [Vibrio furnissii CIP
           102972]
 gi|315179339|gb|ADT86253.1| N utilization substance protein B [Vibrio furnissii NCTC 11218]
          Length = 156

 Score = 50.4 bits (119), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 40/148 (27%), Positives = 70/148 (47%), Gaps = 6/148 (4%)

Query: 10  LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYL---HVDL 66
           +K + RR  AR  A+QA+Y   I   +   I  ++ +     + E       L     D+
Sbjct: 5   VKPAARRN-ARQFALQAIYSWQITKDNVATIEEQFLSGGKYDEEEHHASEPALAAPETDV 63

Query: 67  EWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVI 126
            +FR ++ GV+     +D  +   ++       LDM+  ++LR  + E+     VP +V+
Sbjct: 64  AYFRDLLAGVVLNHTELDSKLRPFVSR--PMQDLDMMELALLRLAMYEMTRREDVPYKVV 121

Query: 127 ISEYVCIAHDFFYGDEPKFINAVLDKVS 154
           I+E + +A  F   D  KF+N VLDK +
Sbjct: 122 INEAIELAKVFAAEDSHKFVNGVLDKAA 149


>gi|239637666|ref|ZP_04678638.1| transcription antitermination factor NusB [Staphylococcus warneri
           L37603]
 gi|239596884|gb|EEQ79409.1| transcription antitermination factor NusB [Staphylococcus warneri
           L37603]
          Length = 128

 Score = 50.1 bits (118), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 41/139 (29%), Positives = 63/139 (45%), Gaps = 13/139 (9%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           R  +R+ A Q L+Q++I     T      E   F  D        Y  +D ++   ++ G
Sbjct: 3   RKESRVQAFQTLFQLEIKDTDLTI----KEAINFIKDD-------YPDLDFDFINWLVTG 51

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
           V D +  +D  I   L + WS  RL      ILR    E++   + P +V+I+E V +A 
Sbjct: 52  VKDHEPVLDEKIKPYLKD-WSLERLLKTDRIILRMATFEILHSDT-PSKVVINEAVELAK 109

Query: 136 DFFYGDEPKFINAVLDKVS 154
            F   D  KFIN VL  ++
Sbjct: 110 QFSDDDHYKFINGVLSNIN 128


>gi|317010284|gb|ADU84031.1| transcription antitermination protein NusB [Helicobacter pylori
           SouthAfrica7]
          Length = 138

 Score = 50.1 bits (118), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 40/141 (28%), Positives = 68/141 (48%), Gaps = 13/141 (9%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           R  AR A ++ LY  +          S  E  +  A + L+ + +  +  L +   + +G
Sbjct: 4   RTQARGAVIELLYAFE----------SGNEEIKKIAPSMLEEKKIK-NNQLAFALSLFNG 52

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
           V+++   ID LI   L + W F RL  +  +ILR G  E I        +II+E + +  
Sbjct: 53  VLEKINEIDALIEPHLKD-WDFKRLGSMEKAILRLGAYE-IGFTPTQNPIIINECIELGK 110

Query: 136 DFFYGDEPKFINAVLDKVSRK 156
            +   + PKF+NA+LD +S+K
Sbjct: 111 LYAEPNTPKFLNAILDSLSKK 131


>gi|109946871|ref|YP_664099.1| transcription antitermination protein NusB [Helicobacter
           acinonychis str. Sheeba]
 gi|122973428|sp|Q17Z26|NUSB_HELAH RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|109714092|emb|CAJ99100.1| transcription termination protein [Helicobacter acinonychis str.
           Sheeba]
          Length = 138

 Score = 50.1 bits (118), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 40/141 (28%), Positives = 68/141 (48%), Gaps = 13/141 (9%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           R  AR A ++ LY  +          S  E  +  A + L+ + +  +  L +   + +G
Sbjct: 4   RTQARGAVIELLYAFE----------SGNEEIKKIAPSMLEEKKIK-NNQLAFALSLFNG 52

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
           V+++   ID LI   L + W F RL  +  +ILR G  E I        +II+E + +  
Sbjct: 53  VLEKINEIDALIEPHLKD-WDFKRLGSMEKAILRLGAYE-IGFTPTQNPIIINECIELGK 110

Query: 136 DFFYGDEPKFINAVLDKVSRK 156
            +   + PKF+NA+LD +S+K
Sbjct: 111 LYAEPNTPKFLNAILDSLSKK 131


>gi|261838874|gb|ACX98639.1| transcription antitermination protein NusB [Helicobacter pylori 52]
          Length = 138

 Score = 50.1 bits (118), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 29/85 (34%), Positives = 47/85 (55%), Gaps = 2/85 (2%)

Query: 72  IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
           + +GV+++   ID LI   L + W F RL  +  +ILR G  E I        +II+E +
Sbjct: 49  LFNGVLEKINEIDALIEPHLKD-WDFKRLGSMEKAILRLGAYE-IGFTPTQNPIIINECI 106

Query: 132 CIAHDFFYGDEPKFINAVLDKVSRK 156
            +   +   + PKF+NA+LD +S+K
Sbjct: 107 ELGKLYAEPNTPKFLNAILDSLSKK 131


>gi|15900351|ref|NP_344955.1| transcription antitermination protein NusB [Streptococcus
           pneumoniae TIGR4]
 gi|111657914|ref|ZP_01408625.1| hypothetical protein SpneT_02000923 [Streptococcus pneumoniae
           TIGR4]
 gi|116516227|ref|YP_815903.1| transcription antitermination protein NusB [Streptococcus
           pneumoniae D39]
 gi|148983827|ref|ZP_01817146.1| transcription antitermination factor NusB [Streptococcus pneumoniae
           SP3-BS71]
 gi|148988184|ref|ZP_01819647.1| transcription antitermination factor NusB [Streptococcus pneumoniae
           SP6-BS73]
 gi|148996835|ref|ZP_01824553.1| transcription antitermination factor NusB [Streptococcus pneumoniae
           SP11-BS70]
 gi|149003529|ref|ZP_01828403.1| transcription antitermination factor NusB [Streptococcus pneumoniae
           SP14-BS69]
 gi|149012182|ref|ZP_01833291.1| transcription antitermination factor NusB [Streptococcus pneumoniae
           SP19-BS75]
 gi|149023719|ref|ZP_01836199.1| transcription antitermination factor NusB [Streptococcus pneumoniae
           SP23-BS72]
 gi|168482670|ref|ZP_02707622.1| transcription antitermination factor NusB [Streptococcus pneumoniae
           CDC1873-00]
 gi|168490656|ref|ZP_02714799.1| transcription antitermination factor NusB [Streptococcus pneumoniae
           CDC0288-04]
 gi|168495037|ref|ZP_02719180.1| transcription antitermination factor NusB [Streptococcus pneumoniae
           CDC3059-06]
 gi|169832898|ref|YP_001693937.1| transcription antitermination protein NusB [Streptococcus
           pneumoniae Hungary19A-6]
 gi|194396779|ref|YP_002037111.1| transcription antitermination protein NusB [Streptococcus
           pneumoniae G54]
 gi|221231296|ref|YP_002510448.1| N utilization substance protein B homolog (NusB protein)
           [Streptococcus pneumoniae ATCC 700669]
 gi|225856159|ref|YP_002737670.1| transcription antitermination protein NusB [Streptococcus
           pneumoniae P1031]
 gi|225860454|ref|YP_002741963.1| transcription antitermination protein NusB [Streptococcus
           pneumoniae Taiwan19F-14]
 gi|237650354|ref|ZP_04524606.1| transcription antitermination protein NusB [Streptococcus
           pneumoniae CCRI 1974]
 gi|237822042|ref|ZP_04597887.1| transcription antitermination protein NusB [Streptococcus
           pneumoniae CCRI 1974M2]
 gi|298230814|ref|ZP_06964495.1| transcription antitermination protein NusB [Streptococcus
           pneumoniae str. Canada MDR_19F]
 gi|298254607|ref|ZP_06978193.1| transcription antitermination protein NusB [Streptococcus
           pneumoniae str. Canada MDR_19A]
 gi|298502226|ref|YP_003724166.1| transcription antitermination protein NusB [Streptococcus
           pneumoniae TCH8431/19A]
 gi|307067077|ref|YP_003876043.1| transcription termination factor [Streptococcus pneumoniae AP200]
 gi|54037926|sp|P65583|NUSB_STRR6 RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|54041676|sp|P65582|NUSB_STRPN RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|122279211|sp|Q04M45|NUSB_STRP2 RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|238688321|sp|B1I9M4|NUSB_STRPI RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|238690799|sp|B5E1P3|NUSB_STRP4 RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|254772658|sp|B8ZLJ7|NUSB_STRPJ RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|254772661|sp|C1CIT2|NUSB_STRZP RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|254772662|sp|C1CPU1|NUSB_STRZT RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|14971902|gb|AAK74595.1| N utilization substance protein B [Streptococcus pneumoniae TIGR4]
 gi|116076803|gb|ABJ54523.1| transcription antitermination factor NusB [Streptococcus pneumoniae
           D39]
 gi|147757410|gb|EDK64449.1| transcription antitermination factor NusB [Streptococcus pneumoniae
           SP11-BS70]
 gi|147758465|gb|EDK65464.1| transcription antitermination factor NusB [Streptococcus pneumoniae
           SP14-BS69]
 gi|147763784|gb|EDK70718.1| transcription antitermination factor NusB [Streptococcus pneumoniae
           SP19-BS75]
 gi|147923974|gb|EDK75086.1| transcription antitermination factor NusB [Streptococcus pneumoniae
           SP3-BS71]
 gi|147926648|gb|EDK77721.1| transcription antitermination factor NusB [Streptococcus pneumoniae
           SP6-BS73]
 gi|147929656|gb|EDK80648.1| transcription antitermination factor NusB [Streptococcus pneumoniae
           SP23-BS72]
 gi|168995400|gb|ACA36012.1| transcription antitermination factor NusB [Streptococcus pneumoniae
           Hungary19A-6]
 gi|172043807|gb|EDT51853.1| transcription antitermination factor NusB [Streptococcus pneumoniae
           CDC1873-00]
 gi|183575029|gb|EDT95557.1| transcription antitermination factor NusB [Streptococcus pneumoniae
           CDC0288-04]
 gi|183575089|gb|EDT95617.1| transcription antitermination factor NusB [Streptococcus pneumoniae
           CDC3059-06]
 gi|194356446|gb|ACF54894.1| transcription antitermination factor NusB [Streptococcus pneumoniae
           G54]
 gi|220673756|emb|CAR68255.1| N utilization substance protein B homolog (NusB protein)
           [Streptococcus pneumoniae ATCC 700669]
 gi|225725650|gb|ACO21502.1| transcription antitermination factor NusB [Streptococcus pneumoniae
           P1031]
 gi|225726476|gb|ACO22327.1| transcription antitermination factor NusB [Streptococcus pneumoniae
           Taiwan19F-14]
 gi|298237821|gb|ADI68952.1| transcription antitermination protein NusB [Streptococcus
           pneumoniae TCH8431/19A]
 gi|301799529|emb|CBW32077.1| N utilization substance protein B homolog (NusB protein)
           [Streptococcus pneumoniae OXC141]
 gi|306408614|gb|ADM84041.1| Transcription termination factor [Streptococcus pneumoniae AP200]
 gi|327390840|gb|EGE89180.1| transcription antitermination factor NusB [Streptococcus pneumoniae
           GA04375]
 gi|332202338|gb|EGJ16407.1| transcription antitermination factor NusB [Streptococcus pneumoniae
           GA41317]
 gi|332203602|gb|EGJ17669.1| transcription antitermination factor NusB [Streptococcus pneumoniae
           GA47368]
 gi|332204458|gb|EGJ18523.1| transcription antitermination factor NusB [Streptococcus pneumoniae
           GA47901]
          Length = 140

 Score = 50.1 bits (118), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 34/117 (29%), Positives = 55/117 (47%), Gaps = 8/117 (6%)

Query: 49  FCADTELDVESVYLH------VDLEWFRV-IIHGVMDRKQHIDLLISSCLTEKWSFSRLD 101
           F  D E      Y H      V L  F + ++ GV  +K+ +D  I+  L   W+  RL 
Sbjct: 25  FGTDVETACRFAYTHDREDTDVQLPAFLIDLVSGVQAKKEELDKQITQHLKAGWTIERLT 84

Query: 102 MILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEE 158
           ++  ++LR GV E I     P  V ++E + +A DF      +FIN +L +   +E+
Sbjct: 85  LVERNLLRLGVFE-ITSFDTPQLVAVNEAIELAKDFSDQKSARFINGLLSQFVTEEQ 140


>gi|224283414|ref|ZP_03646736.1| NusB antitermination factor [Bifidobacterium bifidum NCIMB 41171]
 gi|313140569|ref|ZP_07802762.1| transcription termination factor [Bifidobacterium bifidum NCIMB
           41171]
 gi|313133079|gb|EFR50696.1| transcription termination factor [Bifidobacterium bifidum NCIMB
           41171]
          Length = 223

 Score = 50.1 bits (118), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 37/136 (27%), Positives = 60/136 (44%), Gaps = 14/136 (10%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV-IIH 74
           R  AR  A+  LY+ D  G     +++E             +E       L  + + I+ 
Sbjct: 3   RSTARKRALNTLYEADEKGQDFLSLLAER------------IEEPGAQTPLPDYAIEIVR 50

Query: 75  GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134
           GV D ++ ID +++   T  W   R+ ++  +ILR    E+I    VP  V I E + +A
Sbjct: 51  GVADHRREIDYMLNEHST-GWKVRRMAVVDRNILRIAAWEIIFNDDVPDRVAIDEALGLA 109

Query: 135 HDFFYGDEPKFINAVL 150
                GD P FI+ +L
Sbjct: 110 KTLSDGDSPAFIHGLL 125


>gi|71083732|ref|YP_266452.1| antitermination protein NusB [Candidatus Pelagibacter ubique
           HTCC1062]
 gi|71062845|gb|AAZ21848.1| Antitermination protein NusB [Candidatus Pelagibacter ubique
           HTCC1062]
          Length = 134

 Score = 50.1 bits (118), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 27/108 (25%), Positives = 57/108 (52%), Gaps = 3/108 (2%)

Query: 49  FCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSIL 108
           F  DT+L       H   ++ + ++ G ++R + I   +   L+E    + LD +   I+
Sbjct: 24  FNDDTDLTFPK---HRFKKFIKDVVLGTIERDEVIKEEVKKYLSEDLELTNLDQVFQVIV 80

Query: 109 RAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRK 156
           ++ + E +    V  ++II EY+  ++ F    + K++NA+LDK+++K
Sbjct: 81  KSAIFEFLYKPKVSSKIIIKEYLDASNFFLEDGQTKYLNAILDKIAKK 128


>gi|303232700|ref|ZP_07319385.1| transcription antitermination factor NusB [Atopobium vaginae
           PB189-T1-4]
 gi|302481186|gb|EFL44261.1| transcription antitermination factor NusB [Atopobium vaginae
           PB189-T1-4]
          Length = 192

 Score = 50.1 bits (118), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 27/90 (30%), Positives = 48/90 (53%), Gaps = 1/90 (1%)

Query: 67  EWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVI 126
           E+ R +  G    +  +D LI+   T  W+ +RL  +  +I+R  + E++    V V V 
Sbjct: 48  EFARTLALGADAVRDKLDALIADTAT-NWNVTRLLSVDRNIIRLALFEMLHVDDVDVAVT 106

Query: 127 ISEYVCIAHDFFYGDEPKFINAVLDKVSRK 156
           I+E+V +A  +   D   F+N VL +V+R+
Sbjct: 107 INEFVILAKAYGTDDSAAFVNGVLGQVARR 136


>gi|258405547|ref|YP_003198289.1| NusB antitermination factor [Desulfohalobium retbaense DSM 5692]
 gi|257797774|gb|ACV68711.1| NusB antitermination factor [Desulfohalobium retbaense DSM 5692]
          Length = 147

 Score = 50.1 bits (118), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 39/142 (27%), Positives = 65/142 (45%), Gaps = 10/142 (7%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           R + R  A Q LY ++        +     T+    + E   E+     D  W   ++ G
Sbjct: 9   RRLGRQTAFQVLYSLNFQESHGNGLALLQRTFTHLIEQEEVGEAA---ADFAW--ELVQG 63

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
           V + +  +D LIS   ++ W   R+  I  SILR  + E+     +P +V I+E V +A 
Sbjct: 64  VWENRDELDELISRH-SQHWRVGRIAKIELSILRLALYEMYFRSDIPPKVAINEGVELAK 122

Query: 136 DFFYGDEPK--FINAVLDKVSR 155
           +F  GDE    F+N +LD  ++
Sbjct: 123 EF--GDEQSRGFVNGILDAAAK 142


>gi|37520905|ref|NP_924282.1| transcription antitermination protein NusB [Gloeobacter violaceus
           PCC 7421]
 gi|39931743|sp|Q7NKZ0|NUSB_GLOVI RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|35211900|dbj|BAC89277.1| transcription termination factor [Gloeobacter violaceus PCC 7421]
          Length = 211

 Score = 50.1 bits (118), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 27/72 (37%), Positives = 40/72 (55%), Gaps = 1/72 (1%)

Query: 82  HIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGD 141
           ++D L+ +C+ E W   RL  I   ILR  ++E++E  SVP  V I E V +A  +    
Sbjct: 129 NLDKLLDTCM-EGWQVERLTRIDRDILRLALVEMVELKSVPFRVAIDEAVELAKKYSTDT 187

Query: 142 EPKFINAVLDKV 153
             +FIN VL +V
Sbjct: 188 AVRFINGVLRRV 199


>gi|21241522|ref|NP_641104.1| transcription antitermination protein NusB [Xanthomonas axonopodis
           pv. citri str. 306]
 gi|24638072|sp|Q8PPD5|NUSB_XANAC RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|21106870|gb|AAM35640.1| transcription termination factor NusB [Xanthomonas axonopodis pv.
           citri str. 306]
          Length = 159

 Score = 50.1 bits (118), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 37/143 (25%), Positives = 63/143 (44%), Gaps = 16/143 (11%)

Query: 25  QALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHID 84
           QA+Y   I G    ++I+++             E  +   DL +F  ++ GV+  +  +D
Sbjct: 30  QAVYAWQISGGFAKQVIAQFAH-----------EQAHEVADLAYFENLVEGVLSNRAELD 78

Query: 85  LLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPK 144
             ++  L    S   +D I  ++LR    EL+    VP  V+I+E +  A  F       
Sbjct: 79  TALTPYLDR--SVEEVDAIERAVLRLAAYELLYRQDVPYRVVINEAIETAKRFGSEHGHT 136

Query: 145 FINAVLDKVS---RKEEIKRSGC 164
           ++N VLD+ +   RK E   SG 
Sbjct: 137 YVNGVLDRAAVEWRKVESGASGA 159


>gi|282891352|ref|ZP_06299854.1| hypothetical protein pah_c050o153 [Parachlamydia acanthamoebae str.
           Hall's coccus]
 gi|281498849|gb|EFB41166.1| hypothetical protein pah_c050o153 [Parachlamydia acanthamoebae str.
           Hall's coccus]
          Length = 187

 Score = 50.1 bits (118), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 26/87 (29%), Positives = 53/87 (60%), Gaps = 1/87 (1%)

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
           V+++K  ID LI++  + ++ F R+  +  ++LR G+ E++   S+P +V I+E + ++ 
Sbjct: 54  VLEKKAEIDDLIANT-SREYRFERIQTVEKNVLRLGIYEMLFDDSIPPKVAIAEAIRLSR 112

Query: 136 DFFYGDEPKFINAVLDKVSRKEEIKRS 162
            F   +   F+NA+LD + + +E K S
Sbjct: 113 KFSTPESATFVNALLDHIYQTKEGKVS 139


>gi|21230173|ref|NP_636090.1| transcription antitermination protein NusB [Xanthomonas campestris
           pv. campestris str. ATCC 33913]
 gi|66769837|ref|YP_244599.1| transcription antitermination protein NusB [Xanthomonas campestris
           pv. campestris str. 8004]
 gi|188993052|ref|YP_001905062.1| transcription antitermination protein NusB [Xanthomonas campestris
           pv. campestris str. B100]
 gi|24638071|sp|Q8PCM6|NUSB_XANCP RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|81304209|sp|Q4UQU4|NUSB_XANC8 RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|229620372|sp|B0RVD1|NUSB_XANCB RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|21111708|gb|AAM40014.1| transcription termination factor NusB [Xanthomonas campestris pv.
           campestris str. ATCC 33913]
 gi|66575169|gb|AAY50579.1| transcription termination factor NusB [Xanthomonas campestris pv.
           campestris str. 8004]
 gi|167734812|emb|CAP53022.1| antitermination factor, NusB family [Xanthomonas campestris pv.
           campestris]
          Length = 159

 Score = 50.1 bits (118), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 36/143 (25%), Positives = 62/143 (43%), Gaps = 16/143 (11%)

Query: 25  QALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHID 84
           QA+Y   I G    ++I+++             E  +   DL +F  ++ GV+  +  +D
Sbjct: 30  QAVYAWQIAGGFAKQVIAQFAH-----------EQAHEVADLAYFESLVEGVLSNRSELD 78

Query: 85  LLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPK 144
             ++  L        +D I  ++LR    EL+    VP  V+I+E +  A  F       
Sbjct: 79  TALTPYLDR--GVEEVDAIERAVLRLAAYELLYRQDVPYRVVINEAIETAKRFGSEHGHT 136

Query: 145 FINAVLDKVS---RKEEIKRSGC 164
           ++N VLD+ +   RK E   SG 
Sbjct: 137 YVNGVLDRAAVEWRKMESGASGA 159


>gi|310287767|ref|YP_003939025.1| antitermination factor NusB [Bifidobacterium bifidum S17]
 gi|309251703|gb|ADO53451.1| antitermination factor NusB [Bifidobacterium bifidum S17]
          Length = 223

 Score = 50.1 bits (118), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 37/136 (27%), Positives = 60/136 (44%), Gaps = 14/136 (10%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV-IIH 74
           R  AR  A+  LY+ D  G     +++E             +E       L  + + I+ 
Sbjct: 3   RSTARKRALNTLYEADEKGQDFLSLLAER------------IEEPGAQTPLPDYAIEIVR 50

Query: 75  GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134
           GV D ++ ID +++   T  W   R+ ++  +ILR    E+I    VP  V I E + +A
Sbjct: 51  GVADHRREIDYMLNEHST-GWKVRRMAVVDRNILRIAAWEIIFNDDVPDRVAIDEALGLA 109

Query: 135 HDFFYGDEPKFINAVL 150
                GD P FI+ +L
Sbjct: 110 KTLSDGDSPAFIHGLL 125


>gi|262280550|ref|ZP_06058334.1| transcription termination L factor [Acinetobacter calcoaceticus
           RUH2202]
 gi|262258328|gb|EEY77062.1| transcription termination L factor [Acinetobacter calcoaceticus
           RUH2202]
          Length = 149

 Score = 50.1 bits (118), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 37/136 (27%), Positives = 62/136 (45%), Gaps = 13/136 (9%)

Query: 19  ARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMD 78
           AR  AVQ +Y+  +      EI           +     E+    VDL ++  ++  V+ 
Sbjct: 15  ARRFAVQGIYEWQMSHNPVHEI-----------EARTRAENAMHKVDLNYYHELLTQVIA 63

Query: 79  RKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFF 138
           ++  +D L+   L  +     LD +  + LR G  EL +   VP  V++ E + +A  F 
Sbjct: 64  QRDDLDALLIPVLDRE--LDALDGVELATLRLGAYELRDHLEVPYRVVLDEAIELAKHFG 121

Query: 139 YGDEPKFINAVLDKVS 154
             D  K+IN VLD++S
Sbjct: 122 GADSHKYINGVLDRLS 137


>gi|134294984|ref|YP_001118719.1| transcription antitermination protein NusB [Burkholderia
           vietnamiensis G4]
 gi|166215672|sp|A4JC81|NUSB_BURVG RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|134138141|gb|ABO53884.1| NusB antitermination factor [Burkholderia vietnamiensis G4]
          Length = 145

 Score = 50.1 bits (118), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 43/147 (29%), Positives = 65/147 (44%), Gaps = 14/147 (9%)

Query: 10  LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF 69
           +K S RR  +R  A Q LYQ  +   S+ EI           D +L     Y   D E  
Sbjct: 1   MKKSARRQ-SRELATQGLYQWLLSNASSGEI-----------DAQLRGALGYDKADKELL 48

Query: 70  RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISE 129
             I+HGV+  ++H  L+ +   +      +L  +  ++L     EL      P  VII+E
Sbjct: 49  EAILHGVI--REHATLVEAITPSLDRPIDQLSPVERAVLLIATFELTHHVETPYRVIINE 106

Query: 130 YVCIAHDFFYGDEPKFINAVLDKVSRK 156
            V +   F   D  K++N VLDK++ K
Sbjct: 107 AVELTKTFGGSDGYKYVNGVLDKLAAK 133


>gi|311064653|ref|YP_003971378.1| n utilization substance protein B NusB [Bifidobacterium bifidum
           PRL2010]
 gi|310866972|gb|ADP36341.1| NusB N utilization substance protein B [Bifidobacterium bifidum
           PRL2010]
          Length = 223

 Score = 50.1 bits (118), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 37/136 (27%), Positives = 60/136 (44%), Gaps = 14/136 (10%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV-IIH 74
           R  AR  A+  LY+ D  G     +++E             +E       L  + + I+ 
Sbjct: 3   RSTARKRALNTLYEADEKGQDFLSLLAER------------IEEPGAQTPLPDYAIEIVR 50

Query: 75  GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134
           GV D ++ ID +++   T  W   R+ ++  +ILR    E+I    VP  V I E + +A
Sbjct: 51  GVADHRREIDYMLNEHST-GWKVRRMAVVDRNILRIAAWEIIFNDDVPDRVAIDEALGLA 109

Query: 135 HDFFYGDEPKFINAVL 150
                GD P FI+ +L
Sbjct: 110 KTLSDGDSPAFIHGLL 125


>gi|269797911|ref|YP_003311811.1| sun protein [Veillonella parvula DSM 2008]
 gi|269094540|gb|ACZ24531.1| sun protein [Veillonella parvula DSM 2008]
          Length = 451

 Score = 50.1 bits (118), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 41/150 (27%), Positives = 72/150 (48%), Gaps = 15/150 (10%)

Query: 9   DLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEW 68
           ++K + ++ I RL AV+AL +I+  G      + EY      +D           +D  +
Sbjct: 3   EVKTNQQQNI-RLLAVKALSEINRNGAYANIKLQEYLQKYHLSD-----------LDRRF 50

Query: 69  FRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIIS 128
           F  +++GV+ RK ++D +I      K    +L  ++  ILR G+ ++I    VP    ++
Sbjct: 51  FTELVYGVIRRKNYLDAII--VFFAKRPIKKLSSMVLEILRLGIYQIIYMDKVPESAAVN 108

Query: 129 EYVCIAHDFFYGDEPKFINAVLDKVSRKEE 158
           E V +A     G    F+NAVL  V R+ +
Sbjct: 109 ESVKLAKKLTRGLS-GFVNAVLRSVLRESD 137


>gi|325569721|ref|ZP_08145768.1| N utilization substance protein B [Enterococcus casseliflavus ATCC
           12755]
 gi|325157277|gb|EGC69442.1| N utilization substance protein B [Enterococcus casseliflavus ATCC
           12755]
          Length = 154

 Score = 50.1 bits (118), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 41/147 (27%), Positives = 69/147 (46%), Gaps = 11/147 (7%)

Query: 20  RLAAVQALYQIDIIGCSTTE--IIS--EYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           R  A+QAL+ +D     T +  I+   E E +    + +     VYL         ++ G
Sbjct: 11  RKMALQALFPLDFNKDLTKQDAIMHAIELEHHELIDEEQEHFVPVYL-------DQLVAG 63

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
           V   K+ +D +I S L   W   RL  +  +ILR  + E+I   +VP  V ++E + +A 
Sbjct: 64  VCHYKEALDEVIQSHLKAGWKIQRLSKMDVTILRIALYEMIYVDNVPNRVALNEAIELAK 123

Query: 136 DFFYGDEPKFINAVLDKVSRKEEIKRS 162
            F      KF+N +L  V+++ E K +
Sbjct: 124 TFSDDQSRKFVNGILSTVNQELETKNN 150


>gi|188590523|ref|YP_001921552.1| transcription antitermination factor NusB [Clostridium botulinum E3
           str. Alaska E43]
 gi|238689705|sp|B2V4R8|NUSB_CLOBA RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|188500804|gb|ACD53940.1| transcription antitermination factor NusB [Clostridium botulinum E3
           str. Alaska E43]
          Length = 133

 Score = 50.1 bits (118), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 38/142 (26%), Positives = 66/142 (46%), Gaps = 10/142 (7%)

Query: 15  RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74
            R ++R  A++ L+ + +   +  E +       F  + E D++     +D+ + + I+ 
Sbjct: 2   NRKLSREKAMELLFGMTLNTDNCEETLG-----NFIDNYESDIK----ELDITYIKRILI 52

Query: 75  GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134
           GV + K +ID  IS  L   W   R+  +   ILR  V EL+    +P  V I+E + I 
Sbjct: 53  GVENNKDNIDEAISKNLC-NWKIDRISKVNLCILRLAVYELLHDEEIPNRVAINEALEIT 111

Query: 135 HDFFYGDEPKFINAVLDKVSRK 156
             +       FIN VLD + +K
Sbjct: 112 KKYSDEKSVSFINGVLDNILKK 133


>gi|238755140|ref|ZP_04616487.1| N utilization substance protein B [Yersinia ruckeri ATCC 29473]
 gi|238706700|gb|EEP99070.1| N utilization substance protein B [Yersinia ruckeri ATCC 29473]
          Length = 138

 Score = 50.1 bits (118), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 38/122 (31%), Positives = 59/122 (48%), Gaps = 4/122 (3%)

Query: 35  CSTTEIISEYETYRFCADTELDV--ESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLT 92
           C+   I S   +    AD EL    E     VD+ +FR ++ GV      +D  ++  L+
Sbjct: 12  CAVQAIYSWQLSKNDIADVELQFLSEQDVKDVDITYFRELLSGVAVNVTALDASMAPYLS 71

Query: 93  EKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDK 152
            +     L  +  +ILR  + EL +   VP +V I+E + +A  F   D  KF+N VLDK
Sbjct: 72  RQ--LEELGQVEKAILRLAIFELSKRDDVPYKVAINEAIELAKIFGAEDSHKFVNGVLDK 129

Query: 153 VS 154
           V+
Sbjct: 130 VA 131


>gi|227363166|ref|ZP_03847300.1| transcription antitermination protein NusB [Lactobacillus reuteri
           MM2-3]
 gi|227071772|gb|EEI10061.1| transcription antitermination protein NusB [Lactobacillus reuteri
           MM2-3]
          Length = 141

 Score = 50.1 bits (118), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 31/117 (26%), Positives = 55/117 (47%), Gaps = 7/117 (5%)

Query: 47  YRFCADTELDVESVY---LHVD----LEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSR 99
           +   +D+E D+++VY    H D      +   +++GV + +  +D  I+  L   W+ +R
Sbjct: 20  FALQSDSEADIQTVYEAIPHHDEKQIPPYLLTLVNGVREHQDQLDEQINDLLASGWTINR 79

Query: 100 LDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRK 156
           L      ILR  + E+    +VP  V I+E + +   F      KFIN  L K  ++
Sbjct: 80  LAKPDLVILRLALFEIQYAENVPTVVAINEALELTKTFSSDKSRKFINGALGKFEKQ 136


>gi|325682729|ref|ZP_08162245.1| N utilization substance protein B [Lactobacillus reuteri MM4-1A]
 gi|324977079|gb|EGC14030.1| N utilization substance protein B [Lactobacillus reuteri MM4-1A]
          Length = 132

 Score = 50.1 bits (118), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 31/117 (26%), Positives = 55/117 (47%), Gaps = 7/117 (5%)

Query: 47  YRFCADTELDVESVY---LHVD----LEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSR 99
           +   +D+E D+++VY    H D      +   +++GV + +  +D  I+  L   W+ +R
Sbjct: 11  FALQSDSEADIQTVYEAIPHHDEKQIPPYLLTLVNGVREHQDQLDEQINDLLASGWTINR 70

Query: 100 LDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRK 156
           L      ILR  + E+    +VP  V I+E + +   F      KFIN  L K  ++
Sbjct: 71  LAKPDLVILRLALFEIQYAENVPTVVAINEALELTKTFSSDKSRKFINGALGKFEKQ 127


>gi|226323208|ref|ZP_03798726.1| hypothetical protein COPCOM_00980 [Coprococcus comes ATCC 27758]
 gi|225208398|gb|EEG90752.1| hypothetical protein COPCOM_00980 [Coprococcus comes ATCC 27758]
          Length = 130

 Score = 50.1 bits (118), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 27/87 (31%), Positives = 47/87 (54%), Gaps = 1/87 (1%)

Query: 68  WFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVII 127
           + R  +  +   ++ ID +I+   T  W   R++ +  S+LR  V E+     VPV+V I
Sbjct: 45  YMRKKVKDIAAHEEEIDAMINEHTT-GWKTGRMNKVDLSVLRLAVYEMKWDDEVPVKVAI 103

Query: 128 SEYVCIAHDFFYGDEPKFINAVLDKVS 154
           +E V +A +F   + P F+N VL K++
Sbjct: 104 NEAVELAKNFSGDEGPAFVNGVLGKLA 130


>gi|91763232|ref|ZP_01265196.1| Antitermination protein NusB [Candidatus Pelagibacter ubique
           HTCC1002]
 gi|91717645|gb|EAS84296.1| Antitermination protein NusB [Candidatus Pelagibacter ubique
           HTCC1002]
          Length = 134

 Score = 50.1 bits (118), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 27/108 (25%), Positives = 57/108 (52%), Gaps = 3/108 (2%)

Query: 49  FCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSIL 108
           F  DT+L       H   ++ + ++ G ++R + I   +   L+E    + LD +   I+
Sbjct: 24  FNDDTDLTFPK---HRFKKFIKDVVLGTIERDEVIKEEVRKYLSEDIELTNLDQVFQVIV 80

Query: 109 RAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRK 156
           ++ + E +    V  ++II EY+  ++ F    + K++NA+LDK+++K
Sbjct: 81  KSAIFEFLYKPKVSSKIIIKEYLNASNFFLEDGQTKYLNAILDKIAKK 128


>gi|322379027|ref|ZP_08053430.1| transcription antitermination protein NusB [Helicobacter suis HS1]
 gi|322380793|ref|ZP_08054899.1| transcription antitermination protein NusB [Helicobacter suis HS5]
 gi|321146797|gb|EFX41591.1| transcription antitermination protein NusB [Helicobacter suis HS5]
 gi|321148519|gb|EFX43016.1| transcription antitermination protein NusB [Helicobacter suis HS1]
          Length = 133

 Score = 50.1 bits (118), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 23/86 (26%), Positives = 50/86 (58%), Gaps = 2/86 (2%)

Query: 72  IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
           ++ G +DR +++D ++   L + W   R+  +  +ILR G  E++   + P  ++I+E +
Sbjct: 49  LLKGTLDRLENLDQILQPLLKD-WPIKRIGSMERAILRLGAYEVLYTTTKP-PIVINEAI 106

Query: 132 CIAHDFFYGDEPKFINAVLDKVSRKE 157
            +A  +     PK INA+LD +++++
Sbjct: 107 ELAKQYGEDQAPKLINAILDVLAKQK 132


>gi|257885163|ref|ZP_05664816.1| antitermination protein NusB [Enterococcus faecium 1,231,501]
 gi|257821015|gb|EEV48149.1| antitermination protein NusB [Enterococcus faecium 1,231,501]
          Length = 149

 Score = 50.1 bits (118), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 39/141 (27%), Positives = 65/141 (46%), Gaps = 7/141 (4%)

Query: 20  RLAAVQALYQIDIIGCSTTE--IISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVM 77
           R  A+QAL+ +D     T E  I +  E        E + E V +++D      ++ GV 
Sbjct: 11  REMALQALFPLDFNADLTKEDAIFNAIELDHRDMINEDESEFVPVYLD-----TLVGGVC 65

Query: 78  DRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDF 137
            +K  +D +I   L   W  +R+  +  +ILR  + E+     VP  V ++E + +A  F
Sbjct: 66  AKKDELDKVIEKHLKNNWHINRISKMDLAILRIAIFEMTYVTDVPAAVALNEAIELAKTF 125

Query: 138 FYGDEPKFINAVLDKVSRKEE 158
                 KF+N VL  V ++ E
Sbjct: 126 SDDRSRKFVNGVLSNVLKELE 146


>gi|170782398|ref|YP_001710731.1| transcription termination protein [Clavibacter michiganensis subsp.
           sepedonicus]
 gi|189035882|sp|B0REX0|NUSB_CLAMS RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|169156967|emb|CAQ02136.1| transcription termination protein [Clavibacter michiganensis subsp.
           sepedonicus]
          Length = 137

 Score = 50.1 bits (118), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 39/139 (28%), Positives = 64/139 (46%), Gaps = 9/139 (6%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           R  AR  A+  LY  DI G S    ++  E  R  A+ +      Y        R I  G
Sbjct: 4   RTKARKRALDVLYVADIRGESIPATLA-VEQQRAAAEPDRQASWAYA-------REIAEG 55

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
            ++ +  ID LI +  +  W+ +R+  +  +ILR G+ E++    VP  V ISE V +A 
Sbjct: 56  FVEHQDEIDELIET-YSVNWTLARMPAVDRAILRIGIWEILFNADVPDGVAISESVDLAS 114

Query: 136 DFFYGDEPKFINAVLDKVS 154
                +   F+N +L +++
Sbjct: 115 SLSTDESASFVNGMLARIA 133


>gi|145630810|ref|ZP_01786588.1| transcription antitermination protein NusB [Haemophilus influenzae
           R3021]
 gi|144983692|gb|EDJ91152.1| transcription antitermination protein NusB [Haemophilus influenzae
           R3021]
          Length = 121

 Score = 50.1 bits (118), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 34/106 (32%), Positives = 54/106 (50%), Gaps = 8/106 (7%)

Query: 49  FCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSIL 108
           F  D ++D       VD  +FR +    ++  + +D  IS  +    +F  LD I  +IL
Sbjct: 18  FVLDQDMD------GVDKPYFRKLFRQTIENIETVDFSISPYIDR--AFDELDPIETAIL 69

Query: 109 RAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVS 154
           R  V EL     VP +V+I+E + +A  F   +  K+IN VLDK++
Sbjct: 70  RLAVYELRFELDVPYKVVINEAIEVAKVFGADESHKYINGVLDKIA 115


>gi|148544409|ref|YP_001271779.1| transcription antitermination protein NusB [Lactobacillus reuteri
           DSM 20016]
 gi|184153772|ref|YP_001842113.1| transcription antitermination protein NusB [Lactobacillus reuteri
           JCM 1112]
 gi|166918809|sp|A5VKR8|NUSB_LACRD RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|229620058|sp|B2G851|NUSB_LACRJ RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|148531443|gb|ABQ83442.1| NusB antitermination factor [Lactobacillus reuteri DSM 20016]
 gi|183225116|dbj|BAG25633.1| transcription termination factor [Lactobacillus reuteri JCM 1112]
          Length = 138

 Score = 50.1 bits (118), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 31/117 (26%), Positives = 55/117 (47%), Gaps = 7/117 (5%)

Query: 47  YRFCADTELDVESVY---LHVD----LEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSR 99
           +   +D+E D+++VY    H D      +   +++GV + +  +D  I+  L   W+ +R
Sbjct: 17  FALQSDSEADIQTVYEAIPHHDEKQIPPYLLTLVNGVREHQDQLDEQINDLLASGWTINR 76

Query: 100 LDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRK 156
           L      ILR  + E+    +VP  V I+E + +   F      KFIN  L K  ++
Sbjct: 77  LAKPDLVILRLALFEIQYAENVPTVVAINEALELTKTFSSDKSRKFINGALGKFEKQ 133


>gi|160897907|ref|YP_001563489.1| NusB antitermination factor [Delftia acidovorans SPH-1]
 gi|238687189|sp|A9BVN7|NUSB_DELAS RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|160363491|gb|ABX35104.1| NusB antitermination factor [Delftia acidovorans SPH-1]
          Length = 212

 Score = 50.1 bits (118), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 46/160 (28%), Positives = 78/160 (48%), Gaps = 18/160 (11%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           R  AR  A+QALYQ  ++G +  E I      RF  D      S +   D   +  ++ G
Sbjct: 35  RSRAREFALQALYQ-HLVGGNDVEAID-----RFTRDL-----SGFHKADSVHYDALLRG 83

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
            ++ +  +D LI+  L    + + +  I  + +  GV E   C  VP  V+++E + +A 
Sbjct: 84  CINSQVDLDALIAPKLDR--TMAEISPIEHASMWIGVYEFQHCPDVPWRVVLNECIELAK 141

Query: 136 DFFYGDEPKFINAVLDKVS---RKEEIK--RSGCVSAITQ 170
           +F   D  K++NAVL+ ++   R  E++  R+G  SA  Q
Sbjct: 142 EFGGTDGHKYVNAVLNGLAPTLRAAEVEHDRAGKGSAPAQ 181


>gi|295839941|ref|ZP_06826874.1| transcription antitermination factor NusB [Streptomyces sp. SPB74]
 gi|197696775|gb|EDY43708.1| transcription antitermination factor NusB [Streptomyces sp. SPB74]
          Length = 144

 Score = 49.7 bits (117), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 35/137 (25%), Positives = 65/137 (47%), Gaps = 9/137 (6%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           R  AR  A Q L++ D  G     +++++  +   +DT+    S Y    +E    ++ G
Sbjct: 4   RNTARKRAFQILFEADQRGTDVLTVLADWVRHS-RSDTQQPPVSEYT---ME----LVEG 55

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
                + ID +I+    + W   R+ ++  +I+R G  EL+     P  V++ E V +A 
Sbjct: 56  YAAHARRIDEVIAKYSVD-WPLDRMPVVDRNIVRLGAHELVWVDGTPDAVVMDEAVELAK 114

Query: 136 DFFYGDEPKFINAVLDK 152
           +F   D P F+N +L +
Sbjct: 115 EFSTDDSPAFVNGLLGR 131


>gi|288549985|ref|ZP_05968867.2| transcription antitermination factor NusB [Enterobacter
           cancerogenus ATCC 35316]
 gi|288316874|gb|EFC55812.1| transcription antitermination factor NusB [Enterobacter
           cancerogenus ATCC 35316]
          Length = 118

 Score = 49.7 bits (117), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 34/108 (31%), Positives = 56/108 (51%), Gaps = 8/108 (7%)

Query: 47  YRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCS 106
           Y+F   +E DV+ V    D+ +FR ++ GV     ++D L+   L+       L  +  +
Sbjct: 11  YQFL--SEQDVKDV----DVLYFRELLSGVATNSAYLDGLMKPYLSR--LLEELGQVEKA 62

Query: 107 ILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVS 154
           +LR  + EL +   VP +V I+E + +A  F   D  KF+N VLDK +
Sbjct: 63  VLRIALFELSKRDDVPYKVAINEAIELAKTFGAEDSHKFVNGVLDKAA 110


>gi|295397759|ref|ZP_06807828.1| transcription antitermination factor NusB [Aerococcus viridans ATCC
           11563]
 gi|294973971|gb|EFG49729.1| transcription antitermination factor NusB [Aerococcus viridans ATCC
           11563]
          Length = 217

 Score = 49.7 bits (117), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 31/105 (29%), Positives = 54/105 (51%), Gaps = 6/105 (5%)

Query: 68  WFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELI--ECHSVPVEV 125
           + R ++ GV   +  ID +I + +   WS  RL+++   ILR  V EL+  +  +VP  V
Sbjct: 93  YLRTLVEGVKANRFEIDQMIDNHIHGNWSVQRLELVNLQILRVAVFELLFTDEETVPRVV 152

Query: 126 IISEYVCIAHDFFYGDE--PKFINAVLDKVSRKEEIKRSGCVSAI 168
            ++E + +A    Y D+   KFIN +L  V  + +   +G V  +
Sbjct: 153 AVNEAIELAK--LYSDDRARKFINGILSNVLAELKANANGDVKPV 195


>gi|225166064|ref|ZP_03727805.1| NusB antitermination factor [Opitutaceae bacterium TAV2]
 gi|224799698|gb|EEG18186.1| NusB antitermination factor [Opitutaceae bacterium TAV2]
          Length = 154

 Score = 49.7 bits (117), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 41/152 (26%), Positives = 71/152 (46%), Gaps = 14/152 (9%)

Query: 12  LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71
            + RR  +R+AA+Q L+       S     +  E  R   +T+      Y + D      
Sbjct: 6   FAQRRD-SRVAAMQYLF-----AWSMNAPQNLSEDLRAFYETQEHPREHYAYAD-----E 54

Query: 72  IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
           ++ GV+     ID  I + L + W F R+  I  +ILR  + E+I    VP  V I+E +
Sbjct: 55  VVDGVIRNLVEIDARIRT-LAQNWEFDRIARIDLTILRVAIYEMIFRKDVPPVVSINEAI 113

Query: 132 CIAHDFFYGDEPKFINAVLDKVSRKEEIKRSG 163
            ++  +   D  +FIN +LD++  K+++ R  
Sbjct: 114 NLSKTYSNSDAKRFINGILDRL--KDQLGRDA 143


>gi|251778082|ref|ZP_04821002.1| transcription antitermination factor NusB [Clostridium botulinum E1
           str. 'BoNT E Beluga']
 gi|243082397|gb|EES48287.1| transcription antitermination factor NusB [Clostridium botulinum E1
           str. 'BoNT E Beluga']
          Length = 133

 Score = 49.7 bits (117), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 38/142 (26%), Positives = 66/142 (46%), Gaps = 10/142 (7%)

Query: 15  RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74
            R ++R  A++ L+ + +   +  E +       F  + E D++     +D+ + + I+ 
Sbjct: 2   NRKLSREKAMELLFGMTLNTDNCEETLE-----NFIDNYESDIK----ELDITYIKRILI 52

Query: 75  GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134
           GV + K +ID  IS  L   W   R+  +   ILR  V EL+    +P  V I+E + I 
Sbjct: 53  GVENNKDNIDEAISKNLC-NWKIDRISKVNLCILRLAVYELLHDEEIPNRVAINEALEIT 111

Query: 135 HDFFYGDEPKFINAVLDKVSRK 156
             +       FIN VLD + +K
Sbjct: 112 KKYSDEKSVSFINGVLDNILKK 133


>gi|320104116|ref|YP_004179707.1| NusB antitermination factor [Isosphaera pallida ATCC 43644]
 gi|319751398|gb|ADV63158.1| NusB antitermination factor [Isosphaera pallida ATCC 43644]
          Length = 177

 Score = 49.7 bits (117), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 36/131 (27%), Positives = 58/131 (44%), Gaps = 12/131 (9%)

Query: 24  VQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHI 83
           +Q LY +D     + E I ++  +R    +  D             R +I GV   ++ I
Sbjct: 14  LQVLYMLDHNTGLSQEEIEQFLAWRLREPSWRDEA-----------RGLIEGVRRHRETI 62

Query: 84  DLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEP 143
           D +IS  L   W   R+  I  ++LR G  E++    VPV V I+E V +   F      
Sbjct: 63  DQVISD-LARNWRLDRMAAIDRNVLRLGTYEVLYRLDVPVAVAITEAVELVKRFGSAQSS 121

Query: 144 KFINAVLDKVS 154
           +F+N +L +V 
Sbjct: 122 RFVNGILGRVP 132


>gi|298245582|ref|ZP_06969388.1| NusB antitermination factor [Ktedonobacter racemifer DSM 44963]
 gi|297553063|gb|EFH86928.1| NusB antitermination factor [Ktedonobacter racemifer DSM 44963]
          Length = 147

 Score = 49.7 bits (117), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 38/139 (27%), Positives = 63/139 (45%), Gaps = 14/139 (10%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDL-EWFRVIIH 74
           R  AR+ A+Q LY+ D++     EI+  +             E   LH  + E+ + +  
Sbjct: 5   RRQARMVALQTLYEYDMVHHDPLEILQRH------------AEERNLHAKVVEYAQELAE 52

Query: 75  GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134
           GV      ID  I S   E W   ++  +  +ILR  + E++  ++VP +  I+E V +A
Sbjct: 53  GVCKHLADIDAHIQSAARE-WPLQQMARVDKNILRLAIYEILFNNTVPAKAAINEAVELA 111

Query: 135 HDFFYGDEPKFINAVLDKV 153
             F      +FIN VL  +
Sbjct: 112 KLFGSDTSSRFINGVLGTI 130


>gi|311894818|dbj|BAJ27226.1| putative N utilization substance protein B homolog [Kitasatospora
           setae KM-6054]
          Length = 145

 Score = 49.7 bits (117), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 38/151 (25%), Positives = 69/151 (45%), Gaps = 7/151 (4%)

Query: 12  LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71
           ++  R  AR  A Q L++ D  G S   +++++         +  +  V      E+   
Sbjct: 1   MATARSKARTRAFQILFEADHRGVSPERVLADWIARARDPRPDEGIPQV-----AEYTMQ 55

Query: 72  IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
           ++ G     + ID LIS+     W+  R+ +   +++R G  ELI     P  V++ E V
Sbjct: 56  LVEGYAQHARTIDDLISTYAV-GWTIDRMPIADRNVIRLGAYELIWEDGTPDAVVLDEAV 114

Query: 132 CIAHDFFYGDEPKFINAVLDK-VSRKEEIKR 161
            IA +F   + P F+N +L + +  K  I+R
Sbjct: 115 EIAKEFSTDESPAFVNGLLARFMELKPSIRR 145


>gi|257865766|ref|ZP_05645419.1| antitermination protein NusB [Enterococcus casseliflavus EC30]
 gi|257872101|ref|ZP_05651754.1| antitermination protein NusB [Enterococcus casseliflavus EC10]
 gi|257799700|gb|EEV28752.1| antitermination protein NusB [Enterococcus casseliflavus EC30]
 gi|257806265|gb|EEV35087.1| antitermination protein NusB [Enterococcus casseliflavus EC10]
          Length = 154

 Score = 49.7 bits (117), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 41/147 (27%), Positives = 69/147 (46%), Gaps = 11/147 (7%)

Query: 20  RLAAVQALYQIDIIGCSTTE--IIS--EYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           R  A+QAL+ +D     T +  I+   E E +    + +     VYL         ++ G
Sbjct: 11  RKMALQALFPLDFNKDLTKQDAIMHAIELEHHELIDEEQEHFVPVYL-------DQLVAG 63

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
           V   K+ +D +I S L   W   RL  +  +ILR  + E+I   +VP  V ++E + +A 
Sbjct: 64  VCHYKEALDEVIQSHLKSGWKIQRLSKMDVTILRIALYEMIYVDNVPNRVALNEAIELAK 123

Query: 136 DFFYGDEPKFINAVLDKVSRKEEIKRS 162
            F      KF+N +L  V+++ E K +
Sbjct: 124 TFSDDQSRKFVNGILSTVNQELETKTN 150


>gi|270293308|ref|ZP_06199517.1| N utilization substance protein B [Streptococcus sp. M143]
 gi|270278157|gb|EFA24005.1| N utilization substance protein B [Streptococcus sp. M143]
          Length = 146

 Score = 49.7 bits (117), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 34/117 (29%), Positives = 54/117 (46%), Gaps = 8/117 (6%)

Query: 49  FCADTELDVESVYLH------VDLEWFRV-IIHGVMDRKQHIDLLISSCLTEKWSFSRLD 101
           F  D E      Y H      V L  F   ++ GV  +K+ +D  I+  L   W+  RL 
Sbjct: 31  FGTDVETACRFAYTHDREDTDVQLPAFLTELVSGVQAKKEELDKQITQHLKAGWTIERLT 90

Query: 102 MILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEE 158
           ++  ++LR GV E I     P  V ++E + +A DF      +FIN +L +   +E+
Sbjct: 91  LVERNLLRLGVFE-ITSFDTPQLVAVNEAIELAKDFSDQKSARFINGLLSQFVTEEQ 146


>gi|291613126|ref|YP_003523283.1| NusB antitermination factor [Sideroxydans lithotrophicus ES-1]
 gi|291583238|gb|ADE10896.1| NusB antitermination factor [Sideroxydans lithotrophicus ES-1]
          Length = 150

 Score = 49.7 bits (117), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 30/90 (33%), Positives = 46/90 (51%), Gaps = 2/90 (2%)

Query: 65  DLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVE 124
           D E+F  +++G +   + +   I+  L  K     L  +  S+L  G  ELI    VP  
Sbjct: 52  DTEFFGQLLNGAIAHHEALSAQIAPHLDRK--LDELSPVEYSVLLLGAYELIHHPEVPYR 109

Query: 125 VIISEYVCIAHDFFYGDEPKFINAVLDKVS 154
           V+I+E V +A  F   D  KF+N VLDK++
Sbjct: 110 VVINEAVELAKTFGGSDGHKFVNGVLDKLA 139


>gi|115350870|ref|YP_772709.1| transcription antitermination protein NusB [Burkholderia ambifaria
           AMMD]
 gi|170702886|ref|ZP_02893730.1| NusB antitermination factor [Burkholderia ambifaria IOP40-10]
 gi|171321369|ref|ZP_02910324.1| NusB antitermination factor [Burkholderia ambifaria MEX-5]
 gi|172059882|ref|YP_001807534.1| transcription antitermination protein NusB [Burkholderia ambifaria
           MC40-6]
 gi|122323813|sp|Q0BHJ8|NUSB_BURCM RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|238689186|sp|B1YUJ1|NUSB_BURA4 RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|115280858|gb|ABI86375.1| NusB antitermination factor [Burkholderia ambifaria AMMD]
 gi|170132203|gb|EDT00687.1| NusB antitermination factor [Burkholderia ambifaria IOP40-10]
 gi|171093347|gb|EDT38540.1| NusB antitermination factor [Burkholderia ambifaria MEX-5]
 gi|171992399|gb|ACB63318.1| NusB antitermination factor [Burkholderia ambifaria MC40-6]
          Length = 145

 Score = 49.7 bits (117), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 43/147 (29%), Positives = 65/147 (44%), Gaps = 14/147 (9%)

Query: 10  LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF 69
           +K S RR  +R  A Q LYQ  +   +  EI           D +L     Y   D E  
Sbjct: 1   MKKSARR-QSRELATQGLYQWLLSNAAPGEI-----------DAQLRGALGYDKADKELL 48

Query: 70  RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISE 129
             I+HGV+  ++H  L+ +   +      +L  +  ++L     EL      P  VII+E
Sbjct: 49  DAILHGVI--REHATLIEALTPSLDRPVDQLSPVERAVLLIATFELTHHVETPYRVIINE 106

Query: 130 YVCIAHDFFYGDEPKFINAVLDKVSRK 156
            V +A  F   D  K++N VLDK++ K
Sbjct: 107 AVELAKTFGGSDGYKYVNGVLDKLAAK 133


>gi|149187999|ref|ZP_01866294.1| transcription antitermination protein NusB [Vibrio shilonii AK1]
 gi|148837987|gb|EDL54929.1| transcription antitermination protein NusB [Vibrio shilonii AK1]
          Length = 155

 Score = 49.7 bits (117), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 43/153 (28%), Positives = 73/153 (47%), Gaps = 16/153 (10%)

Query: 10  LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYL------- 62
           +K + RR  AR  A+QA+Y   I    T E ++  E  +F +  + D E  +        
Sbjct: 5   VKPAARRN-ARQFALQAIYSWQI----TKENVATVEE-QFLSGGKYDEEEHHAAEPALTA 58

Query: 63  -HVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSV 121
              D+ +FR ++ GV      +D  +   ++       LDM+  ++LR  + E+     V
Sbjct: 59  PETDVVYFRDLLTGVALNHTELDSKLRPFVSR--PMQDLDMMELALLRLAMYEMTSREDV 116

Query: 122 PVEVIISEYVCIAHDFFYGDEPKFINAVLDKVS 154
           P +V+I+E + +A  F   D  KF+N VLDK +
Sbjct: 117 PYKVVINEAIELAKVFAAEDSHKFVNGVLDKAA 149


>gi|327458960|gb|EGF05308.1| N utilization substance protein B [Streptococcus sanguinis SK1057]
          Length = 143

 Score = 49.7 bits (117), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 44/154 (28%), Positives = 74/154 (48%), Gaps = 27/154 (17%)

Query: 9   DLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFC--------AD--TELDVE 58
           D+ L  RRG+ R  A QAL  ++  G    +++   E  RF         AD  TE D+ 
Sbjct: 3   DILLESRRGL-RQRAFQALMSLEYEG----DLV---EACRFAYSYDKDEGADKATEADIP 54

Query: 59  SVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIEC 118
           +  L+        ++ GV+  K  +D  I+  L + W+  RL ++  +ILR G+ E+ E 
Sbjct: 55  AFLLN--------LVSGVVQSKDDLDKKIAQHLKKGWTVDRLTLVEKNILRLGIFEITEF 106

Query: 119 HSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDK 152
            + P  V ++E + ++  F      KFIN +L +
Sbjct: 107 DT-PQLVAVNEAIELSKQFSDEKSSKFINGILSQ 139


>gi|293364851|ref|ZP_06611568.1| N utilization substance protein B [Streptococcus oralis ATCC 35037]
 gi|307703100|ref|ZP_07640047.1| transcription antitermination factor NusB [Streptococcus oralis
           ATCC 35037]
 gi|315612604|ref|ZP_07887517.1| transcription antitermination factor NusB [Streptococcus sanguinis
           ATCC 49296]
 gi|322374852|ref|ZP_08049366.1| transcription antitermination factor NusB [Streptococcus sp. C300]
 gi|331266955|ref|YP_004326585.1| transcription antitermination protein NusB [Streptococcus oralis
           Uo5]
 gi|291316301|gb|EFE56737.1| N utilization substance protein B [Streptococcus oralis ATCC 35037]
 gi|307623493|gb|EFO02483.1| transcription antitermination factor NusB [Streptococcus oralis
           ATCC 35037]
 gi|315315585|gb|EFU63624.1| transcription antitermination factor NusB [Streptococcus sanguinis
           ATCC 49296]
 gi|321280352|gb|EFX57391.1| transcription antitermination factor NusB [Streptococcus sp. C300]
 gi|326683627|emb|CBZ01245.1| transcription antitermination protein NusB [Streptococcus oralis
           Uo5]
          Length = 140

 Score = 49.7 bits (117), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 34/117 (29%), Positives = 54/117 (46%), Gaps = 8/117 (6%)

Query: 49  FCADTELDVESVYLH------VDLEWFRV-IIHGVMDRKQHIDLLISSCLTEKWSFSRLD 101
           F  D E      Y H      V L  F   ++ GV  +K+ +D  I+  L   W+  RL 
Sbjct: 25  FGTDVETACRFAYTHDREDTDVQLPAFLTELVSGVQAKKEELDKQITQHLKAGWTIERLT 84

Query: 102 MILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEE 158
           ++  ++LR GV E I     P  V ++E + +A DF      +FIN +L +   +E+
Sbjct: 85  LVERNLLRLGVFE-ITSFDTPQLVAVNEAIELAKDFSDQKSARFINGLLSQFVTEEQ 140


>gi|227495454|ref|ZP_03925770.1| conserved hypothetical protein [Actinomyces coleocanis DSM 15436]
 gi|226831001|gb|EEH63384.1| conserved hypothetical protein [Actinomyces coleocanis DSM 15436]
          Length = 180

 Score = 49.7 bits (117), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 32/84 (38%), Positives = 42/84 (50%), Gaps = 1/84 (1%)

Query: 72  IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
           II GV D    ID L+ +  T + +FSRL  +  +ILR    E+I   +VP    I E V
Sbjct: 59  IIEGVRDHLIEIDDLLDTHTTGR-TFSRLPAVDRAILRVATWEIIWNETVPDITAIDEAV 117

Query: 132 CIAHDFFYGDEPKFINAVLDKVSR 155
            I       D P  +NA+LD V R
Sbjct: 118 RITRKISTDDSPALVNAILDAVRR 141


>gi|225018827|ref|ZP_03708019.1| hypothetical protein CLOSTMETH_02777 [Clostridium methylpentosum
           DSM 5476]
 gi|224948387|gb|EEG29596.1| hypothetical protein CLOSTMETH_02777 [Clostridium methylpentosum
           DSM 5476]
          Length = 132

 Score = 49.7 bits (117), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 28/84 (33%), Positives = 44/84 (52%), Gaps = 1/84 (1%)

Query: 75  GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134
           GV      +D LIS  LT KW+ +RL  ++ +ILR  V E++    V   + I+E V +A
Sbjct: 49  GVQQHISELDRLISEHLT-KWNITRLSKVILAILRLAVYEIVYVERVEAPIAINEAVELA 107

Query: 135 HDFFYGDEPKFINAVLDKVSRKEE 158
            ++   ++  F+N VL    R  E
Sbjct: 108 KEYATQEDAAFVNGVLGSFVRAAE 131


>gi|325104804|ref|YP_004274458.1| NusB antitermination factor [Pedobacter saltans DSM 12145]
 gi|324973652|gb|ADY52636.1| NusB antitermination factor [Pedobacter saltans DSM 12145]
          Length = 313

 Score = 49.7 bits (117), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 24/62 (38%), Positives = 37/62 (59%)

Query: 92  TEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLD 151
           T+ W   R+ M+   I++  + ELI   S+PV+V I+EY+ IA +F       FIN +LD
Sbjct: 234 TKNWEADRIAMMDILIMKMALAELIYFSSIPVKVTINEYLEIAKEFSTPKSNVFINGILD 293

Query: 152 KV 153
           K+
Sbjct: 294 KI 295


>gi|306828961|ref|ZP_07462153.1| transcription antitermination factor NusB [Streptococcus mitis ATCC
           6249]
 gi|304429139|gb|EFM32227.1| transcription antitermination factor NusB [Streptococcus mitis ATCC
           6249]
          Length = 140

 Score = 49.7 bits (117), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 34/117 (29%), Positives = 54/117 (46%), Gaps = 8/117 (6%)

Query: 49  FCADTELDVESVYLH------VDLEWFRV-IIHGVMDRKQHIDLLISSCLTEKWSFSRLD 101
           F  D E      Y H      V L  F   ++ GV  +K+ +D  I+  L   W+  RL 
Sbjct: 25  FGTDVETACRFAYTHDREDTDVQLPAFLTELVSGVQAKKEELDKQITQHLKAGWTIERLT 84

Query: 102 MILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEE 158
           ++  ++LR GV E I     P  V ++E + +A DF      +FIN +L +   +E+
Sbjct: 85  LVERNLLRLGVFE-ITSFDTPQLVAVNEAIELAKDFSDQKSARFINGLLGQFVTEEQ 140


>gi|259503557|ref|ZP_05746459.1| N utilization substance protein B [Lactobacillus antri DSM 16041]
 gi|259168470|gb|EEW52965.1| N utilization substance protein B [Lactobacillus antri DSM 16041]
          Length = 136

 Score = 49.3 bits (116), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 28/93 (30%), Positives = 44/93 (47%)

Query: 67  EWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVI 126
           ++ R +  GV +R+  +D  IS  L   W+  RL      ILR  + EL     VP  V 
Sbjct: 44  DYVRQLATGVSERQADLDEQISGLLASDWTIDRLAKADLIILRLALYELQYVDEVPTAVA 103

Query: 127 ISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEI 159
           I+E + +A +F      KFIN  L +  ++  +
Sbjct: 104 INEALELAKEFSSDQSRKFINGALGRFEKENNL 136


>gi|332307436|ref|YP_004435287.1| NusB antitermination factor [Glaciecola agarilytica 4H-3-7+YE-5]
 gi|332174765|gb|AEE24019.1| NusB antitermination factor [Glaciecola agarilytica 4H-3-7+YE-5]
          Length = 140

 Score = 49.3 bits (116), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 43/143 (30%), Positives = 64/143 (44%), Gaps = 14/143 (9%)

Query: 10  LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF 69
           +K + RR  AR  AVQA+Y   +      ++     T     D           VD E+F
Sbjct: 1   MKPAARRK-ARELAVQAVYSWQMSKNPLDQVELSIVTSNNMQD-----------VDTEYF 48

Query: 70  RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISE 129
             ++  V+ +   +D  I   L        LD +  +ILR    EL+E   VP +V+I+E
Sbjct: 49  LELLRAVVRKTAELDAKIKPYLGR--LPEELDPVENAILRLATYELVERIDVPYKVVINE 106

Query: 130 YVCIAHDFFYGDEPKFINAVLDK 152
            + +A  F   +  KFIN VLDK
Sbjct: 107 AIELAKSFGAEESHKFINGVLDK 129


>gi|191638628|ref|YP_001987794.1| transcription antitermination protein NusB [Lactobacillus casei
           BL23]
 gi|238693054|sp|B3WEY5|NUSB_LACCB RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|190712930|emb|CAQ66936.1| N utilization substance protein B homolog (Protein nusB)
           [Lactobacillus casei BL23]
 gi|327382670|gb|AEA54146.1| Transcription termination protein nusB [Lactobacillus casei LC2W]
 gi|327385864|gb|AEA57338.1| Transcription termination protein nusB [Lactobacillus casei BD-II]
          Length = 135

 Score = 49.3 bits (116), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 29/105 (27%), Positives = 52/105 (49%), Gaps = 6/105 (5%)

Query: 52  DTELDVESVYLHV---DLE---WFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILC 105
           + E D ++VY  V   D E   +   ++ GV+ ++  +D  ++  L + WS SRL     
Sbjct: 21  NPEADKDAVYAEVLPQDTEVPAYLTTLVEGVLSKQADLDAALTPQLKKGWSLSRLTKPDL 80

Query: 106 SILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVL 150
            ILR G+ E+    ++P    I+E + +A  +      KF+N +L
Sbjct: 81  IILRLGLYEIRYEEAMPEAAAINEAINLAKRYSDDQSAKFVNGIL 125


>gi|293610510|ref|ZP_06692810.1| conserved hypothetical protein [Acinetobacter sp. SH024]
 gi|292826854|gb|EFF85219.1| conserved hypothetical protein [Acinetobacter sp. SH024]
 gi|325123924|gb|ADY83447.1| transcription termination, L factor (N utilization substance
           protein B) [Acinetobacter calcoaceticus PHEA-2]
          Length = 149

 Score = 49.3 bits (116), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 30/98 (30%), Positives = 51/98 (52%), Gaps = 2/98 (2%)

Query: 57  VESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELI 116
            E+    VDL ++  ++  V+ + + +D L+   L  +   S LD +  + LR G  EL 
Sbjct: 42  AENAMHKVDLNYYHELLTQVIAQHEDLDALLIPVLDRE--LSALDGVELATLRLGAYELR 99

Query: 117 ECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVS 154
           +   VP  V++ E + +A  F   D  K+IN VLD++S
Sbjct: 100 DHLEVPYRVVLDEAIELAKHFGGADSHKYINGVLDRLS 137


>gi|319786237|ref|YP_004145712.1| NusB antitermination factor [Pseudoxanthomonas suwonensis 11-1]
 gi|317464749|gb|ADV26481.1| NusB antitermination factor [Pseudoxanthomonas suwonensis 11-1]
          Length = 156

 Score = 49.3 bits (116), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 36/142 (25%), Positives = 67/142 (47%), Gaps = 16/142 (11%)

Query: 24  VQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHI 83
           +QA+Y   I G +  ++I+++             E  +   DL +F  ++ GV+  +  +
Sbjct: 24  LQAIYAWQISGGNAQQVIAQFAH-----------EQAHEIADLTYFEDLVTGVLSHRASL 72

Query: 84  DLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEP 143
           D  ++  L    +   +D I  ++LR    EL+    VP  V+I+E + IA  F      
Sbjct: 73  DEALAPHLDR--AVEEVDAIERAVLRLAAYELLHRVDVPYRVVINEAIEIAKRFGSEHGH 130

Query: 144 KFINAVLDKVS---RKEEIKRS 162
            ++N VLD+ S   R+ E++ S
Sbjct: 131 TYVNGVLDRASAQWRQAEVQAS 152


>gi|294791792|ref|ZP_06756940.1| ribosomal RNA small subunit methyltransferase B [Veillonella sp.
           6_1_27]
 gi|294457022|gb|EFG25384.1| ribosomal RNA small subunit methyltransferase B [Veillonella sp.
           6_1_27]
          Length = 451

 Score = 49.3 bits (116), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 41/150 (27%), Positives = 72/150 (48%), Gaps = 15/150 (10%)

Query: 9   DLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEW 68
           ++K + ++ I RL AV+AL +I+  G      + EY      +D           +D  +
Sbjct: 3   EVKTNQQQNI-RLLAVKALSEINRNGAYANIKLQEYLQKYHLSD-----------LDRRF 50

Query: 69  FRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIIS 128
           F  +++GV+ RK ++D +I      K    +L  ++  ILR G+ ++I    VP    ++
Sbjct: 51  FTELVYGVIRRKNYLDAIIVHF--AKRPLKKLSSMVVEILRLGIYQIIYMDKVPESAAVN 108

Query: 129 EYVCIAHDFFYGDEPKFINAVLDKVSRKEE 158
           E V +A     G    F+NAVL  V R+ +
Sbjct: 109 ESVKLAKKLTRGLS-GFVNAVLRSVLRESD 137


>gi|282850140|ref|ZP_06259519.1| ribosomal RNA small subunit methyltransferase B [Veillonella
           parvula ATCC 17745]
 gi|294793653|ref|ZP_06758790.1| ribosomal RNA small subunit methyltransferase B [Veillonella sp.
           3_1_44]
 gi|282579633|gb|EFB85037.1| ribosomal RNA small subunit methyltransferase B [Veillonella
           parvula ATCC 17745]
 gi|294455223|gb|EFG23595.1| ribosomal RNA small subunit methyltransferase B [Veillonella sp.
           3_1_44]
          Length = 451

 Score = 49.3 bits (116), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 41/150 (27%), Positives = 72/150 (48%), Gaps = 15/150 (10%)

Query: 9   DLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEW 68
           ++K + ++ I RL AV+AL +I+  G      + EY      +D           +D  +
Sbjct: 3   EVKTNQQQNI-RLLAVKALSEINRNGAYANIKLQEYLQKYHLSD-----------LDRRF 50

Query: 69  FRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIIS 128
           F  +++GV+ RK ++D +I      K    +L  ++  ILR G+ ++I    VP    ++
Sbjct: 51  FTELVYGVIRRKNYLDAIIVHF--AKRPLKKLSSMVVEILRLGIYQIIYMDKVPESAAVN 108

Query: 129 EYVCIAHDFFYGDEPKFINAVLDKVSRKEE 158
           E V +A     G    F+NAVL  V R+ +
Sbjct: 109 ESVKLAKKLTRGLS-GFVNAVLRSVLRESD 137


>gi|226941305|ref|YP_002796379.1| transcription antitermination protein NusB [Laribacter
           hongkongensis HLHK9]
 gi|254772644|sp|C1DB31|NUSB_LARHH RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|226716232|gb|ACO75370.1| NusB [Laribacter hongkongensis HLHK9]
          Length = 165

 Score = 49.3 bits (116), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 43/158 (27%), Positives = 67/158 (42%), Gaps = 26/158 (16%)

Query: 10  LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF 69
           +K   RR  AR  AVQ +YQ  +   +   I           +  L     +   D   F
Sbjct: 1   MKTPRRR--AREFAVQGIYQWQLNALTPATI-----------EKNLRDNEQFAKADEALF 47

Query: 70  RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRA----GVLELIECHSVPVEV 125
           R +++GV++    I+  I+S       F R    +  + RA       EL +    P+ V
Sbjct: 48  RTLLYGVLNDPVRIESAIAS------HFERAPEDVSPVERAVLLMAAFELTQQAETPLAV 101

Query: 126 IISEYVCIAHDFFYGDEPKFINAVLDKVS---RKEEIK 160
           II+E + IA  F   +  +F+N VLDK +   R EE +
Sbjct: 102 IINEAIEIAKTFGGAEGHRFVNGVLDKYAAEVRPEEFE 139


>gi|227549190|ref|ZP_03979239.1| transcription antitermination protein NusB [Corynebacterium
           lipophiloflavum DSM 44291]
 gi|227078750|gb|EEI16713.1| transcription antitermination protein NusB [Corynebacterium
           lipophiloflavum DSM 44291]
          Length = 188

 Score = 49.3 bits (116), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 28/100 (28%), Positives = 47/100 (47%)

Query: 67  EWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVI 126
           E+ R II GV ++   ID  +   L++ W   RL  +   ILR    E++    V   + 
Sbjct: 54  EYTREIITGVAEKLDDIDDAVEQFLSQDWELGRLPAVDRQILRVAAWEILFNDDVAAPIA 113

Query: 127 ISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRSGCVS 166
           IS  + +A ++     P +I+AVLD V +   +  S   +
Sbjct: 114 ISNALGMAEEYAGHAAPPYIHAVLDDVVKTLPVPESAPPA 153


>gi|28895207|ref|NP_801557.1| transcription antitermination protein NusB [Streptococcus pyogenes
           SSI-1]
 gi|28810453|dbj|BAC63390.1| putative transcriptional terminator [Streptococcus pyogenes SSI-1]
          Length = 126

 Score = 49.3 bits (116), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 25/81 (30%), Positives = 44/81 (54%)

Query: 72  IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
           ++ GV + K+ +D LIS+ L + WS  RL +   ++LR G+ E+      P  V ++E +
Sbjct: 35  LVTGVNNHKEELDNLISTHLKKGWSLERLTLTDKTLLRLGLFEIKYFDETPDRVALNEII 94

Query: 132 CIAHDFFYGDEPKFINAVLDK 152
            +A  +      KFIN +L +
Sbjct: 95  EVAKKYSDETSAKFINGLLSQ 115


>gi|84394359|ref|ZP_00993080.1| transcription antitermination protein NusB [Vibrio splendidus
           12B01]
 gi|86147433|ref|ZP_01065745.1| transcription antitermination protein NusB [Vibrio sp. MED222]
 gi|148976613|ref|ZP_01813300.1| transcription antitermination protein NusB [Vibrionales bacterium
           SWAT-3]
 gi|218710372|ref|YP_002417993.1| transcription antitermination protein NusB [Vibrio splendidus
           LGP32]
 gi|254772666|sp|B7VJA4|NUSB_VIBSL RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|84375018|gb|EAP91944.1| transcription antitermination protein NusB [Vibrio splendidus
           12B01]
 gi|85834726|gb|EAQ52872.1| transcription antitermination protein NusB [Vibrio sp. MED222]
 gi|145963964|gb|EDK29222.1| transcription antitermination protein NusB [Vibrionales bacterium
           SWAT-3]
 gi|218323391|emb|CAV19568.1| N utilization substance protein B homolog [Vibrio splendidus LGP32]
          Length = 155

 Score = 49.3 bits (116), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 43/153 (28%), Positives = 72/153 (47%), Gaps = 16/153 (10%)

Query: 10  LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVES--------VY 61
           +K + RR  AR  A+QA+Y   I    T E I+  E  +F +  + D E           
Sbjct: 5   VKPAARRN-ARQFALQAIYSWQI----TKENIATVEE-QFLSGGKYDEEEHHAAEPALAM 58

Query: 62  LHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSV 121
              D+ +FR ++ GV      +D  +   ++       LD++  ++LR  + E+     V
Sbjct: 59  PETDVAYFRDLLTGVALSHMELDSKLRPFVSR--PMQDLDLMELALLRLAMYEMTRREDV 116

Query: 122 PVEVIISEYVCIAHDFFYGDEPKFINAVLDKVS 154
           P +V+I+E + +A  F   D  KF+N VLDK +
Sbjct: 117 PYKVVINEAIELAKVFAAEDSHKFVNGVLDKAA 149


>gi|33519701|ref|NP_878533.1| transcription antitermination protein NusB [Candidatus Blochmannia
           floridanus]
 gi|39931819|sp|Q7VRI1|NUSB_BLOFL RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|33504046|emb|CAD83307.1| transcription termination; L factor [Candidatus Blochmannia
           floridanus]
          Length = 138

 Score = 49.3 bits (116), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 37/138 (26%), Positives = 67/138 (48%), Gaps = 13/138 (9%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           R  ARL A+QALY   +              Y   ++  + ++++  + ++ +F  +  G
Sbjct: 6   RRFARLCALQALYAWQL----------SKNDYTMISNYVIKIQNIQ-NFNISYFLTLYIG 54

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
           V+   + ++ L+   L+       +D I  S+L   + EL +C  VP +V+I+E + +A 
Sbjct: 55  VIHTIKELNTLMIPYLSR--GLKAIDYIEYSVLLIALFELTQCCDVPYKVVINEAIELAK 112

Query: 136 DFFYGDEPKFINAVLDKV 153
            F      KFIN VLDK+
Sbjct: 113 IFGSEKSHKFINGVLDKI 130


>gi|167586433|ref|ZP_02378821.1| NusB antitermination factor [Burkholderia ubonensis Bu]
          Length = 145

 Score = 49.3 bits (116), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 43/147 (29%), Positives = 63/147 (42%), Gaps = 14/147 (9%)

Query: 10  LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF 69
           +K S RR  +R  A Q LYQ  +   S+ EI           D +L     Y   D +  
Sbjct: 1   MKKSARR-QSRELATQGLYQWLLSNASSGEI-----------DAQLRGALGYDKADKDLL 48

Query: 70  RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISE 129
             I+HGV+     +   ++ CL       +L  I  ++L     EL      P  VII+E
Sbjct: 49  DAILHGVIREHATLAEALTPCLDR--PIDQLSPIERAVLLIATFELTHHVETPYRVIINE 106

Query: 130 YVCIAHDFFYGDEPKFINAVLDKVSRK 156
            V +   F   D  K++N VLDK++ K
Sbjct: 107 AVELTKTFGGSDGYKYVNGVLDKLAAK 133


>gi|194466519|ref|ZP_03072506.1| NusB antitermination factor [Lactobacillus reuteri 100-23]
 gi|194453555|gb|EDX42452.1| NusB antitermination factor [Lactobacillus reuteri 100-23]
          Length = 138

 Score = 49.3 bits (116), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 31/117 (26%), Positives = 54/117 (46%), Gaps = 7/117 (5%)

Query: 47  YRFCADTELDVESVY---LHVD----LEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSR 99
           +   +D E D+++VY    H D      +   +++GV + +  +D  I+  L   W+ +R
Sbjct: 17  FALQSDPEADIQTVYEAIPHHDEKQIPPYLLTLVNGVREHQDQLDEQINDLLASGWTINR 76

Query: 100 LDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRK 156
           L      ILR  + E+    +VP  V I+E + +   F      KFIN  L K  ++
Sbjct: 77  LAKPDLVILRLALFEIQYAENVPTVVAINEALELTKTFSSDKSRKFINGALGKFEKQ 133


>gi|284048210|ref|YP_003398549.1| NusB antitermination factor [Acidaminococcus fermentans DSM 20731]
 gi|283952431|gb|ADB47234.1| NusB antitermination factor [Acidaminococcus fermentans DSM 20731]
          Length = 139

 Score = 49.3 bits (116), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 39/139 (28%), Positives = 69/139 (49%), Gaps = 9/139 (6%)

Query: 19  ARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMD 78
           AR  A+++L+ ++     + E     ET R  A+ E D++      DL +   ++ GV +
Sbjct: 6   ARTIAMRSLFALEFSPEQSPE-----ETVRTMAEEE-DIQDTR-KKDLAYALDLVKGVRE 58

Query: 79  RKQHIDLLISSCLTEKWSFSRLDMILCSILR-AGVLELIECHSVPVEVIISEYVCIAHDF 137
            ++ +D  ++  L  KW+  R++ I  ++LR AG         VP  V I+E V +A  +
Sbjct: 59  NQEALDGELNG-LDAKWTLKRMNGIDRNLLRIAGYEMFCSPEPVPPAVAINEAVELAKVY 117

Query: 138 FYGDEPKFINAVLDKVSRK 156
              D P FIN +L  + +K
Sbjct: 118 GGDDSPAFINGLLGSLVKK 136


>gi|25028292|ref|NP_738346.1| transcription antitermination protein NusB [Corynebacterium
           efficiens YS-314]
 gi|32171659|sp|Q8FT35|NUSB_COREF RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|23493576|dbj|BAC18546.1| conserved hypothetical protein [Corynebacterium efficiens YS-314]
          Length = 188

 Score = 49.3 bits (116), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 45/170 (26%), Positives = 71/170 (41%), Gaps = 12/170 (7%)

Query: 3   IQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYL 62
           + ++++  K    R  AR  AV  L++ +        II + +T          V+ V  
Sbjct: 1   MSESRQGYKRHGARYKARRRAVDILFEAESRDVDPVAIIDDRKTLSNA------VDPVVA 54

Query: 63  HVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVP 122
            V  E+   II+GV      ID L+S  + + W   RL  +  ++LR    E++    VP
Sbjct: 55  PV-AEYTEAIINGVAVELDTIDDLLSEHIADTWLLERLPSVDRAVLRVACWEMLYNPDVP 113

Query: 123 VEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRK-----EEIKRSGCVSA 167
           V   + E V IA  +       +INA LD ++ K     E     G VS 
Sbjct: 114 VTTAVVEAVEIASQYSTDKAGAYINATLDNMASKVDELRERAANPGAVSG 163


>gi|145594393|ref|YP_001158690.1| transcription antitermination factor NusB [Salinispora tropica
           CNB-440]
 gi|189035903|sp|A4X612|NUSB_SALTO RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|145303730|gb|ABP54312.1| transcription antitermination factor NusB [Salinispora tropica
           CNB-440]
          Length = 136

 Score = 49.3 bits (116), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 36/138 (26%), Positives = 63/138 (45%), Gaps = 15/138 (10%)

Query: 19  ARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVD--LEWFRVIIHGV 76
           AR  A+  L++ D+ G    E+++ Y            VE +       L +   ++ GV
Sbjct: 7   ARKRALDVLFEADLRGRPPVEVLAGY------------VERIEKPRPEHLGYAVGLVEGV 54

Query: 77  MDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHD 136
             R   +D LI+S   E W+  R+  +  ++ R  V EL+    +   V ISE V +A  
Sbjct: 55  AARLDRVDELIASY-AEGWTLDRMPTVDRNLARIAVYELLYVDEIDDAVAISEAVELARQ 113

Query: 137 FFYGDEPKFINAVLDKVS 154
               D P+F+N +L +++
Sbjct: 114 MSTDDSPRFLNGLLGRIA 131


>gi|15895354|ref|NP_348703.1| transcription antitermination protein NusB [Clostridium
           acetobutylicum ATCC 824]
 gi|22095961|sp|Q97HC8|NUSB_CLOAB RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|15025072|gb|AAK80043.1|AE007710_13 Transcription termination factor NusB [Clostridium acetobutylicum
           ATCC 824]
 gi|325509499|gb|ADZ21135.1| transcription antitermination protein NusB [Clostridium
           acetobutylicum EA 2018]
          Length = 135

 Score = 49.3 bits (116), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 34/136 (25%), Positives = 66/136 (48%), Gaps = 12/136 (8%)

Query: 15  RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74
            R  +R  A++ L++I I   S ++ I  Y+      + E++      ++D E+   I+ 
Sbjct: 2   NRKKSREVAMKLLFEISINKNSISDTIEHYKE-----NNEIE------NLDFEYIERILR 50

Query: 75  GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134
           G+ +  ++ID  I    ++KW  SR+  I  +ILR    E+     +P +V  +E V +A
Sbjct: 51  GIDENMEYIDSKIEES-SKKWKISRISKINITILRMAAYEIFFEKDIPCKVSANEAVELA 109

Query: 135 HDFFYGDEPKFINAVL 150
             +   +   F+N V+
Sbjct: 110 KSYAEENSFSFVNGVI 125


>gi|256832560|ref|YP_003161287.1| NusB antitermination factor [Jonesia denitrificans DSM 20603]
 gi|256686091|gb|ACV08984.1| NusB antitermination factor [Jonesia denitrificans DSM 20603]
          Length = 138

 Score = 49.3 bits (116), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 39/138 (28%), Positives = 61/138 (44%), Gaps = 12/138 (8%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           R  AR  AV  LY+ D    S  +++         AD  +        VDL      + G
Sbjct: 4   RSKARKRAVNILYEADQRNLSAAQVLDIR-----LADPGVPSALPQYAVDL------VEG 52

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
           V+  ++ ID ++ +  +  W   R+  +  +ILR G  EL+    VP  V I E V +A 
Sbjct: 53  VILHRERIDEILETY-SRGWPLRRMPAVDRAILRLGTWELLYNDDVPDIVAIDEAVDLAR 111

Query: 136 DFFYGDEPKFINAVLDKV 153
           +    D P F+N +L +V
Sbjct: 112 ELSTEDSPSFVNGLLGRV 129


>gi|228475963|ref|ZP_04060671.1| transcription antitermination factor NusB [Staphylococcus hominis
           SK119]
 gi|314936353|ref|ZP_07843700.1| transcription antitermination factor NusB [Staphylococcus hominis
           subsp. hominis C80]
 gi|228269786|gb|EEK11266.1| transcription antitermination factor NusB [Staphylococcus hominis
           SK119]
 gi|313654972|gb|EFS18717.1| transcription antitermination factor NusB [Staphylococcus hominis
           subsp. hominis C80]
          Length = 128

 Score = 48.9 bits (115), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 43/138 (31%), Positives = 62/138 (44%), Gaps = 13/138 (9%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           R  +R  A Q L+Q+++     T  I+E     F  D        Y  +D E+   ++ G
Sbjct: 3   RKESRKQAFQTLFQLEMKNTDLT--INE--AINFIKDD-------YPDLDFEFIHWLVTG 51

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
           V D +Q +D  I   L + WS  RL      ILR    EL+   + P +VII+E V +  
Sbjct: 52  VKDHEQVLDQSIEPKLKD-WSIQRLLKTDRIILRMATFELLHSDTPP-KVIINEAVELTK 109

Query: 136 DFFYGDEPKFINAVLDKV 153
            F      KFIN VL  +
Sbjct: 110 QFSDEGHYKFINGVLSNI 127


>gi|313889626|ref|ZP_07823269.1| transcription antitermination factor NusB [Streptococcus
           pseudoporcinus SPIN 20026]
 gi|313121923|gb|EFR45019.1| transcription antitermination factor NusB [Streptococcus
           pseudoporcinus SPIN 20026]
          Length = 143

 Score = 48.9 bits (115), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 41/142 (28%), Positives = 68/142 (47%), Gaps = 16/142 (11%)

Query: 13  SHRRGIARLAAVQALYQIDIIG--CSTTEIISEYETYRFCADTELDVESVYLHVDLEWFR 70
           + RR + R  A QAL+ ++  G    ++    +Y+      D  LDV +  L        
Sbjct: 7   NSRRDL-RERAFQALFNMEHGGDFLESSRFAYDYDKVS-DQDHPLDVPAFLL-------- 56

Query: 71  VIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEY 130
            +++GV + K+ +D +I   L + WS  RL +   ++LR G+ E+      P  V ++E 
Sbjct: 57  TLVNGVNNHKEELDAIIKENLKKGWSIERLTLSDRTMLRLGLYEIKYFDETPDRVALNEI 116

Query: 131 VCIAHDFFYGDE--PKFINAVL 150
           + IA    Y DE   KFIN +L
Sbjct: 117 IEIAKK--YSDETSAKFINGLL 136


>gi|163816787|ref|ZP_02208150.1| hypothetical protein COPEUT_02977 [Coprococcus eutactus ATCC 27759]
 gi|158448044|gb|EDP25039.1| hypothetical protein COPEUT_02977 [Coprococcus eutactus ATCC 27759]
          Length = 153

 Score = 48.9 bits (115), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 31/94 (32%), Positives = 51/94 (54%), Gaps = 1/94 (1%)

Query: 65  DLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVE 124
           D E+    +  ++  K  ID  IS  ++E W   R+     +ILR GV E++   ++P +
Sbjct: 55  DKEYITDKVMDILAHKDAIDNTISE-ISEGWKLPRIGKEELAILRLGVYEVVYDETIPEK 113

Query: 125 VIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEE 158
           V I+E V +A  +      KF+NA+L K+ +KEE
Sbjct: 114 VAINEAVELAKKYCDVSASKFVNALLAKLVKKEE 147


>gi|160938277|ref|ZP_02085632.1| hypothetical protein CLOBOL_03173 [Clostridium bolteae ATCC
           BAA-613]
 gi|158438650|gb|EDP16407.1| hypothetical protein CLOBOL_03173 [Clostridium bolteae ATCC
           BAA-613]
          Length = 272

 Score = 48.9 bits (115), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 24/90 (26%), Positives = 44/90 (48%), Gaps = 1/90 (1%)

Query: 63  HVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVP 122
             D E+ +     +M++   ID  ++      W   R+  +  +ILR  + E++   ++P
Sbjct: 107 EADSEYLQARTANIMEKIPEIDEKLNQAAA-GWKTKRMGKVELTILRLALYEMLHDDAIP 165

Query: 123 VEVIISEYVCIAHDFFYGDEPKFINAVLDK 152
            +V I+E V +A  F   D P F+N +L K
Sbjct: 166 EKVSINEAVELAKKFGGNDSPSFVNGILAK 195


>gi|86133163|ref|ZP_01051745.1| NusB family protein [Polaribacter sp. MED152]
 gi|85820026|gb|EAQ41173.1| NusB family protein [Polaribacter sp. MED152]
          Length = 312

 Score = 48.9 bits (115), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 23/64 (35%), Positives = 35/64 (54%)

Query: 92  TEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLD 151
           T  W   R+  I   +++  + E +   S+PV V I+EY+ IA D+       FIN VLD
Sbjct: 233 TPNWETDRIADIDMILIKMAITEFVNFPSIPVRVTINEYIEIAKDYSTTKSSYFINGVLD 292

Query: 152 KVSR 155
           K+S+
Sbjct: 293 KISK 296


>gi|251792444|ref|YP_003007170.1| transcription antitermination protein NusB [Aggregatibacter
           aphrophilus NJ8700]
 gi|247533837|gb|ACS97083.1| transcription antitermination factor NusB [Aggregatibacter
           aphrophilus NJ8700]
          Length = 141

 Score = 48.9 bits (115), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 43/144 (29%), Positives = 70/144 (48%), Gaps = 14/144 (9%)

Query: 11  KLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFR 70
           K+S RR  AR  AVQALY    I  ++ E++       F  + +++       VD  +FR
Sbjct: 7   KISPRRR-ARECAVQALYSW-AISQNSPELVE----LNFMTEQDMN------GVDKPYFR 54

Query: 71  VIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEY 130
            +    ++    ++  +   L    +   LD I  +ILR  V EL     VP +V+I+E 
Sbjct: 55  KLFRQTVENVDAVEHTMQGYLDR--TLDELDPIEKAILRLAVYELQFEADVPYKVVINEA 112

Query: 131 VCIAHDFFYGDEPKFINAVLDKVS 154
           + +A  F   +  K+IN VLDK++
Sbjct: 113 IEVAKVFGADESHKYINGVLDKIA 136


>gi|171912809|ref|ZP_02928279.1| NusB antitermination factor [Verrucomicrobium spinosum DSM 4136]
          Length = 145

 Score = 48.9 bits (115), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 41/143 (28%), Positives = 69/143 (48%), Gaps = 15/143 (10%)

Query: 15  RRGIARLAAVQALYQIDIIG-CSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVII 73
           +R   R AA+Q L+  D+ G    T+  + +  +    D     ES            ++
Sbjct: 5   KRREGRQAAMQFLFAHDVHGKVEDTDRAAFWTLHSATQDIRAHAES------------LV 52

Query: 74  HGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCI 133
            G+   +  ID  I++ L E + F RL ++  +ILR  V E++    VPV V+I+E V I
Sbjct: 53  TGIKTHQVQIDDCIAATL-ENFRFERLGVVDRNILRLAVYEMLHT-EVPVPVVINEAVEI 110

Query: 134 AHDFFYGDEPKFINAVLDKVSRK 156
           +  F       F+N VLDK++++
Sbjct: 111 SKVFGDTQTRAFVNGVLDKIAKR 133


>gi|308233793|ref|ZP_07664530.1| NusB antitermination factor [Atopobium vaginae DSM 15829]
 gi|328943758|ref|ZP_08241223.1| transcription antitermination factor NusB [Atopobium vaginae DSM
           15829]
 gi|327491727|gb|EGF23501.1| transcription antitermination factor NusB [Atopobium vaginae DSM
           15829]
          Length = 239

 Score = 48.9 bits (115), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 37/146 (25%), Positives = 71/146 (48%), Gaps = 14/146 (9%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           R +AR  A+Q ++Q +       ++++   T    ++  LD          ++ + +  G
Sbjct: 13  RTLARSQALQLMFQAESRNMQVCDVLA---TNYLLSEGPLD----------DFGKRLALG 59

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
             + +  +D LIS  +T  W+ +RL  +  +ILR  + E+I+   V + V I+E V +A 
Sbjct: 60  TDELRDKLDALISRVIT-NWNLNRLLSVDRNILRLALYEMIKVDDVDIAVTINESVNLAK 118

Query: 136 DFFYGDEPKFINAVLDKVSRKEEIKR 161
            +   +   F+N VL +V+R  E  R
Sbjct: 119 AYGTDESSHFVNGVLGQVARMMENGR 144


>gi|197283996|ref|YP_002149868.1| transcription antitermination protein NusB [Proteus mirabilis
           HI4320]
 gi|227358135|ref|ZP_03842476.1| N utilization substance protein B [Proteus mirabilis ATCC 29906]
 gi|238693150|sp|B4EU20|NUSB_PROMH RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|194681483|emb|CAR40329.1| N utilization substance protein B [Proteus mirabilis HI4320]
 gi|227161471|gb|EEI46508.1| N utilization substance protein B [Proteus mirabilis ATCC 29906]
          Length = 137

 Score = 48.9 bits (115), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 38/132 (28%), Positives = 63/132 (47%), Gaps = 13/132 (9%)

Query: 23  AVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQH 82
           AVQA+Y   + G    ++  E+ + +   DT+         VD+ +FR ++ GV      
Sbjct: 13  AVQAIYSWQLSGNDIADVELEFLSEQ---DTQ--------GVDIAYFRELLVGVAINAAR 61

Query: 83  IDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDE 142
           +D  +   L+ +     L  +  +ILR  + EL     VP +V I+E + +A  F   D 
Sbjct: 62  LDKAMEPYLSRQ--LEELGQVEKAILRLAMFELSFREDVPYKVAINEAIELAKVFGADDS 119

Query: 143 PKFINAVLDKVS 154
            KF+N VLDK +
Sbjct: 120 HKFVNGVLDKAA 131


>gi|187935150|ref|YP_001886595.1| transcription antitermination factor NusB [Clostridium botulinum B
           str. Eklund 17B]
 gi|238691670|sp|B2TRN6|NUSB_CLOBB RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|187723303|gb|ACD24524.1| transcription antitermination factor NusB [Clostridium botulinum B
           str. Eklund 17B]
          Length = 133

 Score = 48.9 bits (115), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 37/142 (26%), Positives = 66/142 (46%), Gaps = 10/142 (7%)

Query: 15  RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74
            R ++R  A++ L+ + +   +  E +       F  + E D++     +D+ + + I+ 
Sbjct: 2   NRKLSREKAMELLFGMTLNTDNCEETLE-----NFIDNYESDIK----ELDITYIKRILI 52

Query: 75  GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134
           GV + K +ID  IS  L   W   R+  +   ILR  V EL+    +P  V I+E + I 
Sbjct: 53  GVENNKDNIDESISKNLC-NWKIDRISKVNLCILRLAVYELLHDEEIPNRVAINEALEIT 111

Query: 135 HDFFYGDEPKFINAVLDKVSRK 156
             +       F+N VLD + +K
Sbjct: 112 KKYSDEKSVSFVNGVLDNILKK 133


>gi|313681443|ref|YP_004059181.1| nusb antitermination factor [Sulfuricurvum kujiense DSM 16994]
 gi|313154303|gb|ADR32981.1| NusB antitermination factor [Sulfuricurvum kujiense DSM 16994]
          Length = 132

 Score = 48.9 bits (115), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 45/144 (31%), Positives = 62/144 (43%), Gaps = 21/144 (14%)

Query: 16  RGIARLAAVQALYQIDI----IGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71
           R  AR+A V  LY  D+    I   + EI+ E +      D  LD               
Sbjct: 4   RHQARMAVVSLLYAYDLGNQTIADFSDEILEEKKIRNKQRDFALD--------------- 48

Query: 72  IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
           +  GV +    ID  I   L + W F RL  I  + LR G  E++    +   VII+E +
Sbjct: 49  LFKGVTEHLSEIDEAIVKHLKD-WDFDRLGSIERATLRLGGYEIM-FGELDSAVIINEAI 106

Query: 132 CIAHDFFYGDEPKFINAVLDKVSR 155
            +A  F     PKFIN VLD +S+
Sbjct: 107 EVAKAFGSEQSPKFINGVLDAISK 130


>gi|226329105|ref|ZP_03804623.1| hypothetical protein PROPEN_03008 [Proteus penneri ATCC 35198]
 gi|225202291|gb|EEG84645.1| hypothetical protein PROPEN_03008 [Proteus penneri ATCC 35198]
          Length = 137

 Score = 48.9 bits (115), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 38/132 (28%), Positives = 63/132 (47%), Gaps = 13/132 (9%)

Query: 23  AVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQH 82
           AVQA+Y   + G    ++  E+ + +   DT+         VD+ +FR ++ GV      
Sbjct: 13  AVQAIYSWQLSGNDIADVELEFLSEQ---DTQ--------GVDIAYFRELLVGVAINATR 61

Query: 83  IDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDE 142
           +D  +   L+ +     L  +  +ILR  + EL     VP +V I+E + +A  F   D 
Sbjct: 62  LDKAMEPYLSRQ--LEELGQVEKAILRLAMFELSFREDVPYKVAINEAIELAKVFGADDS 119

Query: 143 PKFINAVLDKVS 154
            KF+N VLDK +
Sbjct: 120 HKFVNGVLDKAA 131


>gi|295132726|ref|YP_003583402.1| antitermination protein NusB [Zunongwangia profunda SM-A87]
 gi|294980741|gb|ADF51206.1| antitermination protein NusB [Zunongwangia profunda SM-A87]
          Length = 303

 Score = 48.9 bits (115), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 26/77 (33%), Positives = 43/77 (55%), Gaps = 2/77 (2%)

Query: 92  TEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLD 151
           T  W   R+  I   +L+  + E +E  S+PV+V I+EY+ I+ ++       FIN +LD
Sbjct: 224 TPNWDKDRIAEIDTVLLKMAICEFLEFPSIPVKVTINEYLEISKEYSTPKSSIFINGILD 283

Query: 152 KVSRKEEIKRSGCVSAI 168
           K+S+  E K  G ++ I
Sbjct: 284 KLSK--EYKTDGKLNKI 298


>gi|325525004|gb|EGD02919.1| transcription antitermination protein NusB [Burkholderia sp. TJI49]
          Length = 145

 Score = 48.9 bits (115), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 43/147 (29%), Positives = 65/147 (44%), Gaps = 14/147 (9%)

Query: 10  LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF 69
           +K S RR  +R  A Q LYQ  +   S+ EI           D +L     Y   D    
Sbjct: 1   MKKSARR-QSRELATQGLYQWLLSNASSGEI-----------DAQLRGALGYDKADKALL 48

Query: 70  RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISE 129
             I+HGV+  ++H  L+ +   +      +L  +  ++L     EL      P  VII+E
Sbjct: 49  DAILHGVI--REHATLVEALTPSLDRPIDQLSPVERAVLLIATFELTHHVETPYRVIINE 106

Query: 130 YVCIAHDFFYGDEPKFINAVLDKVSRK 156
            V +A  F   D  K++N VLDK++ K
Sbjct: 107 AVELAKTFGGSDGYKYVNGVLDKLAAK 133


>gi|73662539|ref|YP_301320.1| transcription antitermination protein NusB [Staphylococcus
           saprophyticus subsp. saprophyticus ATCC 15305]
 gi|119390831|sp|Q49XW9|NUSB_STAS1 RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|72495054|dbj|BAE18375.1| putative antitermination protein [Staphylococcus saprophyticus
           subsp. saprophyticus ATCC 15305]
          Length = 128

 Score = 48.9 bits (115), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 44/140 (31%), Positives = 64/140 (45%), Gaps = 17/140 (12%)

Query: 16  RGIARLAAVQALYQIDIIGCSTT--EIISEYETYRFCADTELDVESVYLHVDLEWFRVII 73
           R  +R  A Q L+Q+++     T  E IS      F  D   D+E        E+   ++
Sbjct: 3   RKESRTQAFQTLFQLEMKNSDLTIEEAIS------FIKDDNPDLE-------FEFISWLV 49

Query: 74  HGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCI 133
            GV D +  +D  I   L + W+ +RL      ILR    E++   S P +VII+E V +
Sbjct: 50  TGVKDHEVVLDEKIQPHLKD-WTLARLLKSDRIILRMSTFEMLHS-STPQKVIINEAVEL 107

Query: 134 AHDFFYGDEPKFINAVLDKV 153
           A  F   D  KFIN VL  +
Sbjct: 108 AKQFSDDDHYKFINGVLSNI 127


>gi|125717317|ref|YP_001034450.1| transcription antitermination protein NusB [Streptococcus sanguinis
           SK36]
 gi|125497234|gb|ABN43900.1| Nitrogen utilization substance protein B, putative [Streptococcus
           sanguinis SK36]
          Length = 148

 Score = 48.9 bits (115), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 42/149 (28%), Positives = 71/149 (47%), Gaps = 17/149 (11%)

Query: 9   DLKLSHRRGIARLAAVQAL----YQIDII-GCSTTEIISEYETYRFCADTELDVESVYLH 63
           D+ L  RRG+ R  A QAL    Y+ D++  C       + E     A  E D+ +  L+
Sbjct: 8   DILLESRRGL-RQRAFQALMSLEYEGDLVEACRFAYSYDKDEGADKAA--EADIPAFLLN 64

Query: 64  VDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPV 123
                   ++ GV+  K  +D  I+  L + W+  RL ++  +ILR G+ E+ E  + P 
Sbjct: 65  --------LVSGVVQSKDDLDKKIAQHLKKGWTVDRLTLVEKNILRLGIFEITEFDT-PQ 115

Query: 124 EVIISEYVCIAHDFFYGDEPKFINAVLDK 152
            V ++E + ++  F      KFIN +L +
Sbjct: 116 LVAVNEAIELSKQFSDEKSSKFINGILSQ 144


>gi|238019375|ref|ZP_04599801.1| hypothetical protein VEIDISOL_01239 [Veillonella dispar ATCC 17748]
 gi|237864074|gb|EEP65364.1| hypothetical protein VEIDISOL_01239 [Veillonella dispar ATCC 17748]
          Length = 451

 Score = 48.9 bits (115), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 40/146 (27%), Positives = 68/146 (46%), Gaps = 14/146 (9%)

Query: 13  SHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVI 72
           S+ +   RL AV+AL  I+  G      + EY      +D           +D  +F  +
Sbjct: 6   SYEQQNIRLLAVKALSDINRNGAYANIKLQEYLQKYHLSD-----------LDRRFFTEL 54

Query: 73  IHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVC 132
           ++GV+ RK ++D +I      K    +L  ++  ILR G+ ++I    VP    ++E V 
Sbjct: 55  VYGVIRRKNYLDAIIIHF--AKRPLKKLSSMVVEILRLGIYQIIYMDKVPESAAVNESVK 112

Query: 133 IAHDFFYGDEPKFINAVLDKVSRKEE 158
           +A +   G    F+NAVL  V R+ +
Sbjct: 113 LAKNLTRGLS-GFVNAVLRSVLRESD 137


>gi|169350501|ref|ZP_02867439.1| hypothetical protein CLOSPI_01269 [Clostridium spiroforme DSM 1552]
 gi|169292821|gb|EDS74954.1| hypothetical protein CLOSPI_01269 [Clostridium spiroforme DSM 1552]
          Length = 134

 Score = 48.9 bits (115), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 37/142 (26%), Positives = 70/142 (49%), Gaps = 10/142 (7%)

Query: 13  SHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVI 72
            +R+ + R  AV A+YQ  +I  +T E+ +  ++ +  A+ +          D ++  ++
Sbjct: 3   KYRKKLIREKAVIAIYQKLLIDITTEEVYNYLDSDKELANDK---------DDYDYCVML 53

Query: 73  IHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVC 132
           I  + +  +     ++  L + WS  RL  +  +IL  G  EL+E      EVII+E V 
Sbjct: 54  ISSIANNLEKYKAEVAKHLKKGWSLERLSKMELAILLVGCYELLETDQSK-EVIINEAVE 112

Query: 133 IAHDFFYGDEPKFINAVLDKVS 154
           ++  +   D  KF+N VL+K+ 
Sbjct: 113 LSKKYCDDDVYKFVNGVLNKIK 134


>gi|310642666|ref|YP_003947424.1| transcription antitermination factor nusb [Paenibacillus polymyxa
           SC2]
 gi|309247616|gb|ADO57183.1| Transcription antitermination factor NusB [Paenibacillus polymyxa
           SC2]
          Length = 149

 Score = 48.9 bits (115), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 27/81 (33%), Positives = 44/81 (54%), Gaps = 1/81 (1%)

Query: 73  IHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVC 132
           + G  + K+ ID L++  L + W  SRL  +   ILR  V E+I    VP +V ++E + 
Sbjct: 59  VRGTWEHKEAIDGLLADYL-KGWQISRLSRVDRQILRLAVYEMIFREDVPAKVAVNEAIE 117

Query: 133 IAHDFFYGDEPKFINAVLDKV 153
           ++  F   +  KF+N VL +V
Sbjct: 118 LSKHFGTEESGKFVNGVLGRV 138


>gi|229823019|ref|ZP_04449089.1| hypothetical protein GCWU000282_00312 [Catonella morbi ATCC 51271]
 gi|229787832|gb|EEP23946.1| hypothetical protein GCWU000282_00312 [Catonella morbi ATCC 51271]
          Length = 154

 Score = 48.9 bits (115), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 41/142 (28%), Positives = 65/142 (45%), Gaps = 8/142 (5%)

Query: 11  KLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFR 70
           K+S+R  + R  AVQ ++Q+          +S  +   F  +   D E+ +   D  +  
Sbjct: 10  KMSNRHQV-REKAVQTIFQL----IRPQVPVSLDQACAFALEAGNDPEAGFEGSD-AYLD 63

Query: 71  VIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLEL--IECHSVPVEVIIS 128
            ++ GV    + +D  IS  L E W+  RL  I  +ILR    EL  +    VP +V ++
Sbjct: 64  RLVQGVNQTAEELDQRISHYLAEDWTLDRLARIDLAILRVAFYELLYVSEDEVPSKVAVN 123

Query: 129 EYVCIAHDFFYGDEPKFINAVL 150
           E V +A  F      +FIN VL
Sbjct: 124 EAVELAKTFSDDKSKQFINGVL 145


>gi|332288213|ref|YP_004419065.1| transcription antitermination protein NusB [Gallibacterium anatis
           UMN179]
 gi|330431109|gb|AEC16168.1| transcription antitermination protein NusB [Gallibacterium anatis
           UMN179]
          Length = 145

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 45/152 (29%), Positives = 69/152 (45%), Gaps = 18/152 (11%)

Query: 7   KKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDV--ESVYLHV 64
           K + K S RR  AR   VQALY   I   S   I             ELD+         
Sbjct: 6   KTEKKPSKRRR-ARECTVQALYSWFISKNSPESI-------------ELDLVTNDETKGA 51

Query: 65  DLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVE 124
           D+ +FR + +G ++   +++   +S L  K     L  I  +IL     EL     +P +
Sbjct: 52  DVVYFRKLFNGTVNNLDNLEQEYASFLDRK--IEELGTIERAILDCATFELKYVDDIPYK 109

Query: 125 VIISEYVCIAHDFFYGDEPKFINAVLDKVSRK 156
           V+I+E + +A  F   D  K+IN++LDK++ K
Sbjct: 110 VVINEAIEVAKTFGASDSHKYINSILDKLAPK 141


>gi|311742352|ref|ZP_07716161.1| transcription antitermination factor NusB [Aeromicrobium marinum
           DSM 15272]
 gi|311313980|gb|EFQ83888.1| transcription antitermination factor NusB [Aeromicrobium marinum
           DSM 15272]
          Length = 136

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 25/82 (30%), Positives = 42/82 (51%), Gaps = 1/82 (1%)

Query: 72  IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
           ++ GV   +  ID +IS      W+  R+  +  ++LR G+ E++    VP  V +SE V
Sbjct: 47  LVEGVAGTRDRIDAIISEH-AHGWTLDRMPAVDRNLLRLGIYEILYVDDVPDAVAVSEAV 105

Query: 132 CIAHDFFYGDEPKFINAVLDKV 153
            +A +    +   F+N VL KV
Sbjct: 106 SLAQELSTDESASFVNGVLSKV 127


>gi|299139121|ref|ZP_07032297.1| NusB antitermination factor [Acidobacterium sp. MP5ACTX8]
 gi|298598801|gb|EFI54963.1| NusB antitermination factor [Acidobacterium sp. MP5ACTX8]
          Length = 141

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 40/142 (28%), Positives = 64/142 (45%), Gaps = 13/142 (9%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTE-LDVESVYLHVDLEWFRVIIH 74
           R  +R  A+Q L+Q D+ G    E + E     F A  E +D E+     DL        
Sbjct: 4   RRKSRELAMQMLFQGDL-GKQKPEEVEEL----FWASREDVDDETRGFADDLHRL----- 53

Query: 75  GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134
               R+  +D LI     + W   R+ ++  ++LR  V E++     P  VII+E + IA
Sbjct: 54  -ATQREDEVDALIQKH-AQNWRLERMPVVDRNLLRTAVAEMVGYPKTPAAVIINETLEIA 111

Query: 135 HDFFYGDEPKFINAVLDKVSRK 156
             +   +   F+N VLD + R+
Sbjct: 112 RRYAAPESIHFLNGVLDAIGRE 133


>gi|226366336|ref|YP_002784119.1| transcription antitermination protein NusB [Rhodococcus opacus B4]
 gi|254772652|sp|C1B4I5|NUSB_RHOOB RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|226244826|dbj|BAH55174.1| transcription antitermination protein NusB [Rhodococcus opacus B4]
          Length = 169

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 27/82 (32%), Positives = 42/82 (51%), Gaps = 1/82 (1%)

Query: 72  IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
           ++ GV +    +D +ISS L + W+  RL  +  +ILR  V EL     VP  V + E V
Sbjct: 59  VVTGVAENLDRLDEVISSHL-QDWTLERLPAVDRAILRIAVWELFHATDVPPVVAVDEAV 117

Query: 132 CIAHDFFYGDEPKFINAVLDKV 153
            +A      + P F+N +L +V
Sbjct: 118 ELAKQLSTDESPGFVNGILGQV 139


>gi|254253011|ref|ZP_04946329.1| Transcription termination factor [Burkholderia dolosa AUO158]
 gi|124895620|gb|EAY69500.1| Transcription termination factor [Burkholderia dolosa AUO158]
          Length = 145

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 42/147 (28%), Positives = 65/147 (44%), Gaps = 14/147 (9%)

Query: 10  LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF 69
           +K S RR  +R  A Q LYQ  +   S+ EI           D +L     Y   D +  
Sbjct: 1   MKKSARRQ-SRELATQGLYQWLLSNASSGEI-----------DAQLRGALGYDKADKDLL 48

Query: 70  RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISE 129
             I+HGV+  ++H  L+ +          +L  +  ++L     EL      P  V+I+E
Sbjct: 49  DAILHGVI--REHATLVEAIAPALDRPIDQLSPVERAVLLIATFELTHHIETPYRVVINE 106

Query: 130 YVCIAHDFFYGDEPKFINAVLDKVSRK 156
            V +A  F   D  K++N VLDK++ K
Sbjct: 107 AVELAKTFGGSDGYKYVNGVLDKLAAK 133


>gi|282856378|ref|ZP_06265657.1| transcription antitermination factor NusB [Pyramidobacter piscolens
           W5455]
 gi|282585749|gb|EFB91038.1| transcription antitermination factor NusB [Pyramidobacter piscolens
           W5455]
          Length = 174

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 34/118 (28%), Positives = 58/118 (49%), Gaps = 4/118 (3%)

Query: 39  EIISEYETYRFCADTELDVESVYLHVDL-EWFRVIIHGVMDRK--QHIDLLISSCLTEKW 95
           E ++E        +T+ D ESV   V   ++ R   H  + R+    ID LI +  TE W
Sbjct: 51  EAVAENGAEAESGETDADEESVLTRVPFADYRRSCEHACLVRRALPEIDALIETYSTE-W 109

Query: 96  SFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKV 153
              R+ ++  +I+R  + E +    VP  V +SE V +A ++   D  +F+N VL ++
Sbjct: 110 KTERMSLVDRTIIRLALYEAVIAKKVPPGVALSEAVRLAKEYGSDDSSRFVNGVLARI 167


>gi|332970403|gb|EGK09395.1| transcription antitermination factor NusB [Kingella kingae ATCC
           23330]
          Length = 151

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 49/164 (29%), Positives = 74/164 (45%), Gaps = 25/164 (15%)

Query: 6   NKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIIS---EYETYRFCADTELDVESVY- 61
           N+   K S RR  AR  AVQALYQ+ +      E+ S   E+  ++  AD EL  E  + 
Sbjct: 6   NQPKTKKSPRRR-AREFAVQALYQVAMNQSIAAEVASHMREHGDFK-NADNELFTELFFG 63

Query: 62  LHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSV 121
            H +   +   I   +DR ++                 ++ I  +IL     EL      
Sbjct: 64  AHQNQREYMQHIRPHLDRDENA----------------VNPIERAILLLATHELAAMPQT 107

Query: 122 PVEVIISEYVCIAHDFFYGDEPKFINAVLDKVS---RKEEIKRS 162
           P  V+I+E V +   F   D  KFIN++LDK++   R +E KR+
Sbjct: 108 PYPVVINEAVELTKTFGGTDSHKFINSILDKLAGELRPDEPKRN 151


>gi|227534863|ref|ZP_03964912.1| transcription antitermination protein NusB [Lactobacillus paracasei
           subsp. paracasei ATCC 25302]
 gi|227187619|gb|EEI67686.1| transcription antitermination protein NusB [Lactobacillus paracasei
           subsp. paracasei ATCC 25302]
          Length = 139

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 28/105 (26%), Positives = 52/105 (49%), Gaps = 6/105 (5%)

Query: 52  DTELDVESVYLHV---DLE---WFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILC 105
           + E D ++VY  V   D E   +   ++ GV+ ++  +D  ++  L + W+ SRL     
Sbjct: 25  NPEADKDAVYAEVLPQDTEVPAYLTTLVEGVLSKQADLDAALTPQLKKGWTLSRLTKPDL 84

Query: 106 SILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVL 150
            ILR G+ E+    ++P    I+E + +A  +      KF+N +L
Sbjct: 85  IILRLGLYEIRYEEAMPEAAAINEAINLAKRYSDDQSAKFVNGIL 129


>gi|332523180|ref|ZP_08399432.1| transcription antitermination factor NusB [Streptococcus porcinus
           str. Jelinkova 176]
 gi|332314444|gb|EGJ27429.1| transcription antitermination factor NusB [Streptococcus porcinus
           str. Jelinkova 176]
          Length = 143

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 40/142 (28%), Positives = 68/142 (47%), Gaps = 16/142 (11%)

Query: 13  SHRRGIARLAAVQALYQIDIIG--CSTTEIISEYETYRFCADTELDVESVYLHVDLEWFR 70
           + RR + R  A QAL+ ++  G    +++   +Y+      D  LD+ +  L        
Sbjct: 7   NSRRDL-RERAFQALFNMEHGGDFLESSQFAYDYDKVS-DQDHPLDIPAFLL-------- 56

Query: 71  VIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEY 130
            +++GV + K  +D +I   L + WS  RL +   ++LR G+ E+      P  V ++E 
Sbjct: 57  TLVNGVNNHKDELDAIIKENLKKGWSIERLTLSDRTMLRLGLYEIKYFDETPDRVALNEI 116

Query: 131 VCIAHDFFYGDE--PKFINAVL 150
           + IA    Y DE   KFIN +L
Sbjct: 117 IEIAKK--YSDETSAKFINGLL 136


>gi|170017709|ref|YP_001728628.1| transcription termination factor [Leuconostoc citreum KM20]
 gi|169804566|gb|ACA83184.1| Transcription termination factor [Leuconostoc citreum KM20]
          Length = 140

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 28/92 (30%), Positives = 48/92 (52%), Gaps = 1/92 (1%)

Query: 67  EWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVI 126
           ++   +++G++  K  +D  IS  L   W+ +R++     ILR  + EL +   VP +V 
Sbjct: 44  DYLPRLVNGILGNKIDLDAQISEHLAAGWAIARINKADLVILRLAIYELSQ-QLVPYKVA 102

Query: 127 ISEYVCIAHDFFYGDEPKFINAVLDKVSRKEE 158
           I E + +A  F   D+ KF+N VL   + K E
Sbjct: 103 IDEALILAKTFADEDDRKFVNGVLKNFAPKVE 134


>gi|257893505|ref|ZP_05673158.1| transcription antiterminator NusB [Enterococcus faecium 1,231,408]
 gi|257829884|gb|EEV56491.1| transcription antiterminator NusB [Enterococcus faecium 1,231,408]
          Length = 152

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 38/136 (27%), Positives = 61/136 (44%), Gaps = 7/136 (5%)

Query: 20  RLAAVQALYQIDIIGCSTTE--IISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVM 77
           R  A+QAL+ +D     T E  I +  E        E + E V +++D      ++ GV 
Sbjct: 18  REMALQALFPLDFNADLTKEDAIFNAIELDHRDMINEDESEFVPVYLD-----TLVGGVC 72

Query: 78  DRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDF 137
            +K  +D +I   L   W  +R+  +   ILR  + E+     VP  V ++E + +A  F
Sbjct: 73  AKKDELDKVIEKHLKNNWHINRISKMDLVILRIAIFEMTYVTDVPAAVALNEAIELAKTF 132

Query: 138 FYGDEPKFINAVLDKV 153
                 KF+N VL  V
Sbjct: 133 SDDRSRKFVNGVLSNV 148


>gi|255524173|ref|ZP_05391133.1| NusB antitermination factor [Clostridium carboxidivorans P7]
 gi|296186630|ref|ZP_06855032.1| transcription antitermination factor NusB [Clostridium
           carboxidivorans P7]
 gi|255512158|gb|EET88438.1| NusB antitermination factor [Clostridium carboxidivorans P7]
 gi|296048667|gb|EFG88099.1| transcription antitermination factor NusB [Clostridium
           carboxidivorans P7]
          Length = 155

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 32/110 (29%), Positives = 53/110 (48%), Gaps = 2/110 (1%)

Query: 42  SEYETYRFCADTELDVESVYLH-VDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRL 100
           SE +        E+D E++ L  +D+E+   ++ GV + K+ ID  I   L   W  +RL
Sbjct: 40  SELQITGIEGKNEIDPENIDLKDIDMEYVIRVLKGVQENKESIDSAIEKHLI-NWKLNRL 98

Query: 101 DMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVL 150
             +  +ILR    E +   ++P  V I+E + +A  +       FIN VL
Sbjct: 99  SKLDVAILRVCTYEFLYEDNIPKNVSINEAIELAKRYSGDKSAAFINGVL 148


>gi|116515210|ref|YP_802839.1| hypothetical protein BCc_285 [Buchnera aphidicola str. Cc (Cinara
           cedri)]
 gi|122285394|sp|Q057F3|NUSB_BUCCC RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|116257064|gb|ABJ90746.1| transcription termination [Buchnera aphidicola str. Cc (Cinara
           cedri)]
          Length = 142

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 43/150 (28%), Positives = 70/150 (46%), Gaps = 13/150 (8%)

Query: 12  LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71
           +  +R  AR  A+Q LY   I   S   ++ E E Y    + +  ++ +Y H        
Sbjct: 1   MKSKRRKARELAIQVLYSWQI---SKKIVLFETEKYVIEQNKKYSLDKIYFHK------- 50

Query: 72  IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
           I+ GV+  K    +            +RLD I  +ILR    E+I+   +P +VII+E +
Sbjct: 51  IVTGVI--KNIFYIDKIIKKNISKKKNRLDYIEQAILRLASYEIIKRLDIPYKVIINEGI 108

Query: 132 CIAHDFFYGDEPKFINAVLDK-VSRKEEIK 160
            +A  +      KFIN++LDK ++ K  IK
Sbjct: 109 ELAKIYGSNKSHKFINSILDKIITNKNNIK 138


>gi|163840712|ref|YP_001625117.1| transcription antitermination factor [Renibacterium salmoninarum
           ATCC 33209]
 gi|162954188|gb|ABY23703.1| transcription antitermination factor [Renibacterium salmoninarum
           ATCC 33209]
          Length = 143

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 25/84 (29%), Positives = 43/84 (51%), Gaps = 1/84 (1%)

Query: 72  IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
           II GV  +++ ID  + +   + W+  R+  +    LR G  EL+    VP  V +SE V
Sbjct: 54  IIDGVGQKQEEIDEFLQTY-AQGWTLERMPAVDLIALRIGAWELLYNDDVPDAVAVSEAV 112

Query: 132 CIAHDFFYGDEPKFINAVLDKVSR 155
            +A      + P+FIN +L ++ +
Sbjct: 113 ELAKQLSTDESPQFINGLLGRLQQ 136


>gi|258515792|ref|YP_003192014.1| NusB antitermination factor [Desulfotomaculum acetoxidans DSM 771]
 gi|257779497|gb|ACV63391.1| NusB antitermination factor [Desulfotomaculum acetoxidans DSM 771]
          Length = 156

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 36/145 (24%), Positives = 70/145 (48%), Gaps = 14/145 (9%)

Query: 12  LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71
           +S R G  R  A+Q L+QI++ G    E           AD+   V        +E+ R 
Sbjct: 1   MSRREG--RQIAMQILFQIEVGGIDPEEAFKNT-----VADSTCPVPI------MEFARQ 47

Query: 72  IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
           ++ G +   + ID +IS  +++ W   R+  +  +++R  + E+    ++P+ V  +E +
Sbjct: 48  LVFGTLGHLKEIDRVISE-ISKGWRLDRIANVDKTLIRMALYEIFYEDNIPLNVSANEAI 106

Query: 132 CIAHDFFYGDEPKFINAVLDKVSRK 156
            +A  F   +  KF+N ++ KV +K
Sbjct: 107 ELAKIFGGEESGKFVNGIIGKVVQK 131


>gi|116495122|ref|YP_806856.1| transcription antitermination protein NusB [Lactobacillus casei
           ATCC 334]
 gi|122263461|sp|Q038F8|NUSB_LACC3 RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|116105272|gb|ABJ70414.1| NusB antitermination factor [Lactobacillus casei ATCC 334]
          Length = 135

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 28/105 (26%), Positives = 52/105 (49%), Gaps = 6/105 (5%)

Query: 52  DTELDVESVYLHV---DLE---WFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILC 105
           + E D ++VY  V   D E   +   ++ GV+ ++  +D  ++  L + W+ SRL     
Sbjct: 21  NPEADKDAVYAEVLPQDTEVPAYLTTLVEGVLSKQADLDAALTPQLKKGWTLSRLTKPDL 80

Query: 106 SILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVL 150
            ILR G+ E+    ++P    I+E + +A  +      KF+N +L
Sbjct: 81  IILRLGLYEIRYEEAMPEAAAINEAINLAKRYSDDQSAKFVNGIL 125


>gi|242309730|ref|ZP_04808885.1| transcription antitermination protein NusB [Helicobacter pullorum
           MIT 98-5489]
 gi|239523731|gb|EEQ63597.1| transcription antitermination protein NusB [Helicobacter pullorum
           MIT 98-5489]
          Length = 148

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 30/90 (33%), Positives = 50/90 (55%), Gaps = 2/90 (2%)

Query: 67  EWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVI 126
           E+   +  GV+   + +DL IS  L + W FS++  +  +ILR GV E+I  H +   + 
Sbjct: 44  EFATSLFEGVIANLEALDLRISHQLKD-WDFSKIGDMEKAILRLGVYEIIFNH-LSKAIA 101

Query: 127 ISEYVCIAHDFFYGDEPKFINAVLDKVSRK 156
           I+E + +A  F   +  KFIN VLD +++ 
Sbjct: 102 INEALELAKSFGNENSAKFINGVLDGIAKN 131


>gi|260588123|ref|ZP_05854036.1| transcription antitermination factor NusB [Blautia hansenii DSM
           20583]
 gi|260541650|gb|EEX22219.1| transcription antitermination factor NusB [Blautia hansenii DSM
           20583]
          Length = 135

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 28/81 (34%), Positives = 45/81 (55%), Gaps = 4/81 (4%)

Query: 80  KQHIDLLISSCLTEK---WSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHD 136
           K+H++  I + L EK   W   R+  +  +ILR  V E+     VPV+V I+E V I+  
Sbjct: 55  KEHLEE-IDALLNEKSAGWKTKRMSKVDLNILRLAVYEMKYDEDVPVKVAINEAVEISKS 113

Query: 137 FFYGDEPKFINAVLDKVSRKE 157
           F   D   F+N +L K++R++
Sbjct: 114 FGGDDSASFVNGILGKIARED 134


>gi|69244729|ref|ZP_00602993.1| Antitermination protein NusB [Enterococcus faecium DO]
 gi|227550442|ref|ZP_03980491.1| transcription antitermination protein NusB [Enterococcus faecium
           TX1330]
 gi|257879351|ref|ZP_05659004.1| antitermination protein NusB [Enterococcus faecium 1,230,933]
 gi|257881783|ref|ZP_05661436.1| antitermination protein NusB [Enterococcus faecium 1,231,502]
 gi|257888470|ref|ZP_05668123.1| antitermination protein NusB [Enterococcus faecium 1,141,733]
 gi|257890177|ref|ZP_05669830.1| antitermination protein NusB [Enterococcus faecium 1,231,410]
 gi|257897155|ref|ZP_05676808.1| antitermination protein NusB [Enterococcus faecium Com12]
 gi|257899153|ref|ZP_05678806.1| antitermination protein NusB [Enterococcus faecium Com15]
 gi|258615757|ref|ZP_05713527.1| transcription antitermination protein NusB [Enterococcus faecium
           DO]
 gi|260558793|ref|ZP_05830982.1| antitermination protein NusB [Enterococcus faecium C68]
 gi|261206503|ref|ZP_05921203.1| antitermination protein NusB [Enterococcus faecium TC 6]
 gi|289565413|ref|ZP_06445862.1| transcription antitermination factor NusB [Enterococcus faecium
           D344SRF]
 gi|293377380|ref|ZP_06623584.1| transcription antitermination factor NusB [Enterococcus faecium
           PC4.1]
 gi|293553169|ref|ZP_06673806.1| transcription antitermination factor NusB [Enterococcus faecium
           E1039]
 gi|293560490|ref|ZP_06676982.1| transcription antitermination factor NusB [Enterococcus faecium
           E1162]
 gi|293568316|ref|ZP_06679640.1| transcription antitermination factor NusB [Enterococcus faecium
           E1071]
 gi|293571749|ref|ZP_06682768.1| transcription antitermination factor NusB [Enterococcus faecium
           E980]
 gi|294614729|ref|ZP_06694631.1| transcription antitermination factor NusB [Enterococcus faecium
           E1636]
 gi|294618975|ref|ZP_06698470.1| transcription antitermination factor NusB [Enterococcus faecium
           E1679]
 gi|294621587|ref|ZP_06700752.1| transcription antitermination factor NusB [Enterococcus faecium
           U0317]
 gi|314937887|ref|ZP_07845203.1| transcription antitermination factor NusB [Enterococcus faecium
           TX0133a04]
 gi|314941378|ref|ZP_07848271.1| transcription antitermination factor NusB [Enterococcus faecium
           TX0133C]
 gi|314950137|ref|ZP_07853423.1| transcription antitermination factor NusB [Enterococcus faecium
           TX0082]
 gi|314951322|ref|ZP_07854376.1| transcription antitermination factor NusB [Enterococcus faecium
           TX0133A]
 gi|314992847|ref|ZP_07858248.1| transcription antitermination factor NusB [Enterococcus faecium
           TX0133B]
 gi|314998051|ref|ZP_07862939.1| transcription antitermination factor NusB [Enterococcus faecium
           TX0133a01]
 gi|68196320|gb|EAN10749.1| Antitermination protein NusB [Enterococcus faecium DO]
 gi|227180343|gb|EEI61315.1| transcription antitermination protein NusB [Enterococcus faecium
           TX1330]
 gi|257813579|gb|EEV42337.1| antitermination protein NusB [Enterococcus faecium 1,230,933]
 gi|257817441|gb|EEV44769.1| antitermination protein NusB [Enterococcus faecium 1,231,502]
 gi|257824524|gb|EEV51456.1| antitermination protein NusB [Enterococcus faecium 1,141,733]
 gi|257826537|gb|EEV53163.1| antitermination protein NusB [Enterococcus faecium 1,231,410]
 gi|257833720|gb|EEV60141.1| antitermination protein NusB [Enterococcus faecium Com12]
 gi|257837065|gb|EEV62139.1| antitermination protein NusB [Enterococcus faecium Com15]
 gi|260075252|gb|EEW63565.1| antitermination protein NusB [Enterococcus faecium C68]
 gi|260079213|gb|EEW66904.1| antitermination protein NusB [Enterococcus faecium TC 6]
 gi|289162742|gb|EFD10593.1| transcription antitermination factor NusB [Enterococcus faecium
           D344SRF]
 gi|291589028|gb|EFF20852.1| transcription antitermination factor NusB [Enterococcus faecium
           E1071]
 gi|291592467|gb|EFF24074.1| transcription antitermination factor NusB [Enterococcus faecium
           E1636]
 gi|291594636|gb|EFF26018.1| transcription antitermination factor NusB [Enterococcus faecium
           E1679]
 gi|291598752|gb|EFF29804.1| transcription antitermination factor NusB [Enterococcus faecium
           U0317]
 gi|291602579|gb|EFF32794.1| transcription antitermination factor NusB [Enterococcus faecium
           E1039]
 gi|291605638|gb|EFF35080.1| transcription antitermination factor NusB [Enterococcus faecium
           E1162]
 gi|291608206|gb|EFF37509.1| transcription antitermination factor NusB [Enterococcus faecium
           E980]
 gi|292644072|gb|EFF62178.1| transcription antitermination factor NusB [Enterococcus faecium
           PC4.1]
 gi|313587893|gb|EFR66738.1| transcription antitermination factor NusB [Enterococcus faecium
           TX0133a01]
 gi|313592651|gb|EFR71496.1| transcription antitermination factor NusB [Enterococcus faecium
           TX0133B]
 gi|313596539|gb|EFR75384.1| transcription antitermination factor NusB [Enterococcus faecium
           TX0133A]
 gi|313599801|gb|EFR78644.1| transcription antitermination factor NusB [Enterococcus faecium
           TX0133C]
 gi|313642745|gb|EFS07325.1| transcription antitermination factor NusB [Enterococcus faecium
           TX0133a04]
 gi|313643578|gb|EFS08158.1| transcription antitermination factor NusB [Enterococcus faecium
           TX0082]
          Length = 149

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 39/141 (27%), Positives = 64/141 (45%), Gaps = 7/141 (4%)

Query: 20  RLAAVQALYQIDIIGCSTTE--IISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVM 77
           R  A+QAL+ +D     T E  I +  E        E + E V +++D      ++ GV 
Sbjct: 11  REMALQALFPLDFNADLTKEDAIFNAIELDHRDMINEDESEFVPVYLD-----TLVGGVC 65

Query: 78  DRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDF 137
            +K  +D +I   L   W  +R+  +   ILR  + E+     VP  V ++E + +A  F
Sbjct: 66  AKKDELDKVIEKHLKNNWHINRISKMDLVILRIAIFEMTYVTDVPAAVALNEAIELAKTF 125

Query: 138 FYGDEPKFINAVLDKVSRKEE 158
                 KF+N VL  V ++ E
Sbjct: 126 SDDRSRKFVNGVLSNVLKELE 146


>gi|237752651|ref|ZP_04583131.1| transcription termination protein [Helicobacter winghamensis ATCC
           BAA-430]
 gi|229376140|gb|EEO26231.1| transcription termination protein [Helicobacter winghamensis ATCC
           BAA-430]
          Length = 199

 Score = 48.5 bits (114), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 38/144 (26%), Positives = 67/144 (46%), Gaps = 21/144 (14%)

Query: 16  RGIARLAAVQALYQI----DIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71
           R  AR+A  Q LY      D I     EI+SE++                 +   E+ + 
Sbjct: 4   RTHARVAVAQLLYAYGSGNDGISKFVEEILSEHKIK---------------NAQNEFAKT 48

Query: 72  IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
           + +GV++  + +DL I   + + W F R+  +  +ILR G  E+I    +   ++I+E +
Sbjct: 49  LFNGVLEHLEEVDLRIKHQI-KNWDFERIGDMERAILRLGAYEII-FSGMDKAIVINEAL 106

Query: 132 CIAHDFFYGDEPKFINAVLDKVSR 155
            I  +F      KFIN +LD +++
Sbjct: 107 EITKNFSNETSTKFINGILDGIAK 130


>gi|168335572|ref|ZP_02693635.1| transcription termination factor [Epulopiscium sp. 'N.t. morphotype
           B']
          Length = 135

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 27/83 (32%), Positives = 44/83 (53%), Gaps = 1/83 (1%)

Query: 74  HGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCI 133
            G++D    ID  I + L + W+ SR+  +   ILR  V E+     +P +V I+E V I
Sbjct: 49  EGIVDNMDAIDTEIEANLVD-WNLSRIAKVDLMILRLAVYEINYAKDLPPKVAINEAVEI 107

Query: 134 AHDFFYGDEPKFINAVLDKVSRK 156
           A ++      KFIN +L  +++K
Sbjct: 108 AQEYSTEKSGKFINGILGNMNKK 130


>gi|255318080|ref|ZP_05359325.1| transcription antitermination factor NusB [Acinetobacter
           radioresistens SK82]
 gi|262380575|ref|ZP_06073729.1| transcription antitermination factor NusB [Acinetobacter
           radioresistens SH164]
 gi|255304903|gb|EET84075.1| transcription antitermination factor NusB [Acinetobacter
           radioresistens SK82]
 gi|262298021|gb|EEY85936.1| transcription antitermination factor NusB [Acinetobacter
           radioresistens SH164]
          Length = 149

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 35/137 (25%), Positives = 63/137 (45%), Gaps = 13/137 (9%)

Query: 19  ARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMD 78
           AR  AVQ +Y+  +      EI           +     E+    VDL ++  ++  V+ 
Sbjct: 15  ARRFAVQGIYEWQMSHNPVHEI-----------EARTRAENAMHKVDLGYYHELLTQVVA 63

Query: 79  RKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFF 138
           + + +D L+   L  +     LD +  + LR G  EL +   +P  V++ E + +A  F 
Sbjct: 64  QHEALDTLLVPVLDRE--LGALDGVELATLRLGAYELRDHLEIPYRVVLDEAIELAKHFG 121

Query: 139 YGDEPKFINAVLDKVSR 155
             D  K+IN VLD++++
Sbjct: 122 GADSHKYINGVLDRLAQ 138


>gi|167037510|ref|YP_001665088.1| transcription antitermination protein NusB [Thermoanaerobacter
           pseudethanolicus ATCC 33223]
 gi|167040172|ref|YP_001663157.1| transcription antitermination protein NusB [Thermoanaerobacter sp.
           X514]
 gi|256752868|ref|ZP_05493706.1| NusB antitermination factor [Thermoanaerobacter ethanolicus CCSD1]
 gi|300914255|ref|ZP_07131571.1| NusB antitermination factor [Thermoanaerobacter sp. X561]
 gi|307724509|ref|YP_003904260.1| NusB antitermination factor [Thermoanaerobacter sp. X513]
 gi|320115924|ref|YP_004186083.1| transcription antitermination factor NusB [Thermoanaerobacter
           brockii subsp. finnii Ako-1]
 gi|238687554|sp|B0K0U6|NUSB_THEPX RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|238687696|sp|B0K9D9|NUSB_THEP3 RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|166854412|gb|ABY92821.1| NusB antitermination factor [Thermoanaerobacter sp. X514]
 gi|166856344|gb|ABY94752.1| NusB antitermination factor [Thermoanaerobacter pseudethanolicus
           ATCC 33223]
 gi|256748245|gb|EEU61311.1| NusB antitermination factor [Thermoanaerobacter ethanolicus CCSD1]
 gi|300889190|gb|EFK84336.1| NusB antitermination factor [Thermoanaerobacter sp. X561]
 gi|307581570|gb|ADN54969.1| NusB antitermination factor [Thermoanaerobacter sp. X513]
 gi|319929015|gb|ADV79700.1| transcription antitermination factor NusB [Thermoanaerobacter
           brockii subsp. finnii Ako-1]
          Length = 140

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 36/143 (25%), Positives = 65/143 (45%), Gaps = 14/143 (9%)

Query: 15  RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74
            R  AR   V+ LYQ D+     ++I+  +   +   + +            E+    + 
Sbjct: 2   NRTEAREWVVKMLYQYDVSRLPISKILENFYKEKDPGEQK------------EYIENTVI 49

Query: 75  GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134
           G ++  + ID  I    ++ W+ +R+  I  +ILR  + E+ +  ++PV + I+E V IA
Sbjct: 50  GAIEHLEEIDKEIER-YSQNWALNRMPKIDLAILRCSIYEM-QYGNIPVNISINEAVEIA 107

Query: 135 HDFFYGDEPKFINAVLDKVSRKE 157
             +   D P FIN +L    R E
Sbjct: 108 KKYSTEDSPAFINGLLGAFVRDE 130


>gi|124268133|ref|YP_001022137.1| putative N utilization substance B [Methylibium petroleiphilum PM1]
 gi|124260908|gb|ABM95902.1| putative N utilization substance B (transcriptional
           antiterminator)(l factor) transcription regulator
           protein [Methylibium petroleiphilum PM1]
          Length = 176

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 43/148 (29%), Positives = 64/148 (43%), Gaps = 15/148 (10%)

Query: 7   KKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDL 66
           K   K S RR  +R  A+Q LYQ  + G     I +           ELD    +   D 
Sbjct: 26  KPAQKSSRRR--SREFALQGLYQWLVSGSEAVVIEAHMR--------ELDG---FKQADA 72

Query: 67  EWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVI 126
             F  ++HG +     +D +++  +  K   + L  I   +L  G  EL  C  +P  V 
Sbjct: 73  AHFDALLHGCVAEAAALDAVLARHVDRK--TTELSPIEHGVLMIGAYELKHCIDIPYRVA 130

Query: 127 ISEYVCIAHDFFYGDEPKFINAVLDKVS 154
           I+E V +A  F   D  K++N VLDK +
Sbjct: 131 INEAVELAKSFGGTDGHKYVNGVLDKAA 158


>gi|281357054|ref|ZP_06243544.1| NusB antitermination factor [Victivallis vadensis ATCC BAA-548]
 gi|281316612|gb|EFB00636.1| NusB antitermination factor [Victivallis vadensis ATCC BAA-548]
          Length = 170

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 33/96 (34%), Positives = 50/96 (52%), Gaps = 3/96 (3%)

Query: 67  EWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVI 126
           E+ + + + V   K+ ID  I    +E W + RL ++  +I+R  V E++    VP  V 
Sbjct: 67  EYAQQLYNNVAVHKEEIDATIQ-ARSENWEWDRLSVVDRNIMRIAVAEMLYEEEVPPVVS 125

Query: 127 ISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRS 162
           I E V IA D+       FIN VL+ V  K+ +KRS
Sbjct: 126 IDEAVEIARDYSGEAAGNFINGVLNGV--KDTLKRS 159


>gi|221135088|ref|ZP_03561391.1| transcription antitermination protein NusB [Glaciecola sp.
           HTCC2999]
          Length = 145

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 34/106 (32%), Positives = 52/106 (49%), Gaps = 11/106 (10%)

Query: 57  VESVYLH---------VDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSI 107
           +ESV LH         +DL +F+ ++     +   +D+ I   L        LD I  +I
Sbjct: 32  IESVELHLATTNDMSKIDLAFFQELLRDTAKKVVELDVAIKPYLGR--LPEELDPIEKAI 89

Query: 108 LRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKV 153
           LR   LEL +   VP +V+I+E + +A  F   +  KF+N VLDK 
Sbjct: 90  LRLATLELTQRIDVPYKVVINEAIELAKSFGAEESHKFVNGVLDKA 135


>gi|299768336|ref|YP_003730362.1| transcription antitermination protein NusB [Acinetobacter sp. DR1]
 gi|298698424|gb|ADI88989.1| transcription antitermination protein NusB [Acinetobacter sp. DR1]
          Length = 149

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 30/98 (30%), Positives = 50/98 (51%), Gaps = 2/98 (2%)

Query: 57  VESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELI 116
            E+    VDL ++  ++  V+  +  +D L+   L  +   S LD +  + LR G  EL 
Sbjct: 42  AENAMHKVDLNYYHELLTQVIALRDDLDALLIPVLDRE--LSALDGVELATLRLGAYELR 99

Query: 117 ECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVS 154
           +   VP  V++ E + +A  F   D  K+IN VLD++S
Sbjct: 100 DHLEVPYRVVLDEAIELAKHFGGADSHKYINGVLDRLS 137


>gi|257784275|ref|YP_003179492.1| NusB antitermination factor [Atopobium parvulum DSM 20469]
 gi|257472782|gb|ACV50901.1| NusB antitermination factor [Atopobium parvulum DSM 20469]
          Length = 167

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 37/138 (26%), Positives = 68/138 (49%), Gaps = 14/138 (10%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           R  AR  A+Q L+Q +    S  E++    T    ++  LD          E+ R++  G
Sbjct: 8   RTRARSQALQLLFQAEATNRSVLEVLGGDYT---LSEGPLD----------EYARLLAVG 54

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
               +  +D +I++  ++ WS  R+  +  ++LR  + E+++   V V V I+E V +A 
Sbjct: 55  ADGIRDDLDDIIAA-YSKDWSIDRMPSVDRNLLRISLYEILKVPEVDVAVAINEVVDLAR 113

Query: 136 DFFYGDEPKFINAVLDKV 153
            +   D P+FIN VL ++
Sbjct: 114 AYCGDDSPRFINGVLGRI 131


>gi|332525525|ref|ZP_08401682.1| putative N utilization substance B [Rubrivivax benzoatilyticus JA2]
 gi|332109092|gb|EGJ10015.1| putative N utilization substance B [Rubrivivax benzoatilyticus JA2]
          Length = 159

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 39/153 (25%), Positives = 66/153 (43%), Gaps = 15/153 (9%)

Query: 2   TIQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVY 61
           T    +   K + RR  +R  A+Q LY+  I G     I           D  +  +  +
Sbjct: 6   TAARKRAAPKSARRR--SREIALQGLYEWLISGADAGTI-----------DAHMREQDGF 52

Query: 62  LHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSV 121
              D   F  ++HG +     +D +++  +  +   ++L  +  ++L  G  EL  C  V
Sbjct: 53  DKCDRAHFDALLHGCIAEASALDAVLARHVDRR--TNQLSPVEHAVLMIGAYELTHCLEV 110

Query: 122 PVEVIISEYVCIAHDFFYGDEPKFINAVLDKVS 154
           P  V I+E V +A  F   D  K++N VLDK +
Sbjct: 111 PYRVAINEAVELAKSFGGTDGHKYVNGVLDKAA 143


>gi|315652076|ref|ZP_07905077.1| transcription antitermination factor NusB [Eubacterium saburreum
           DSM 3986]
 gi|315485723|gb|EFU76104.1| transcription antitermination factor NusB [Eubacterium saburreum
           DSM 3986]
          Length = 150

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 30/97 (30%), Positives = 49/97 (50%), Gaps = 1/97 (1%)

Query: 61  YLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHS 120
           Y   D+E+ R     V D +  ID +I+  L++ W   R+  +  SILR  + E+     
Sbjct: 55  YGDGDIEYIRSKAMLVRDNQAEIDKMITE-LSQGWKLERIGRVEKSILRLAIAEMKYDSD 113

Query: 121 VPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKE 157
           +PV V I+E V +A  +   +   F+NA+L K   +E
Sbjct: 114 IPVSVAINEAVELAKAYGRDESYSFVNAILSKAGVEE 150


>gi|224476635|ref|YP_002634241.1| transcription antitermination protein NusB [Staphylococcus carnosus
           subsp. carnosus TM300]
 gi|254772655|sp|B9DNQ0|NUSB_STACT RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|222421242|emb|CAL28056.1| putative N utilization substance protein NusB [Staphylococcus
           carnosus subsp. carnosus TM300]
          Length = 128

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 42/139 (30%), Positives = 66/139 (47%), Gaps = 13/139 (9%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           R  +R  A QAL+Q+++        +S  E   F  D   D+E  +++    W   ++ G
Sbjct: 3   RKESRSQAFQALFQLEMENTD----LSIDEAINFIKDDYPDLEFDFIY----W---LVSG 51

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
           V D +  +D  I + L + W  SRL      ILR    EL    + P +VII+E V +A 
Sbjct: 52  VKDHEPVLDEKIQNNLKD-WKISRLLKTDRIILRMAAFELANSDTPP-KVIINEAVELAK 109

Query: 136 DFFYGDEPKFINAVLDKVS 154
            +   D  +FIN VL  ++
Sbjct: 110 QYSDDDHYRFINGVLSNLN 128


>gi|78044961|ref|YP_360813.1| transcription antitermination factor NusB [Carboxydothermus
           hydrogenoformans Z-2901]
 gi|119390754|sp|Q3AAM1|NUSB_CARHZ RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|77997076|gb|ABB15975.1| transcription antitermination factor NusB [Carboxydothermus
           hydrogenoformans Z-2901]
          Length = 144

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 38/141 (26%), Positives = 71/141 (50%), Gaps = 11/141 (7%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           R  AR  A +AL+ +D     T + +      +  A+ ++  E +     +++ R ++ G
Sbjct: 3   RHTARELAFKALFGLDFAPEKTLDTLESLWAEK-IAEGKIPPEKL-----VDFSRELVRG 56

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
           V+++K+ +D +I       W F RL  +  ++LR  + E++    + + V I E V +A 
Sbjct: 57  VIEKKERLDEIIRRRAI-GWDFKRLAKVDKTLLRLALYEMLYRPDIDIPVSIDEAVELAK 115

Query: 136 DFFYGDE--PKFINAVLDKVS 154
              YG+E  PKFIN +L  V+
Sbjct: 116 --VYGEEESPKFINGILGYVA 134


>gi|161525612|ref|YP_001580624.1| transcription antitermination protein NusB [Burkholderia
           multivorans ATCC 17616]
 gi|189349659|ref|YP_001945287.1| transcription antitermination protein NusB [Burkholderia
           multivorans ATCC 17616]
 gi|221201158|ref|ZP_03574198.1| transcription antitermination factor NusB [Burkholderia multivorans
           CGD2M]
 gi|221206389|ref|ZP_03579402.1| transcription antitermination factor NusB [Burkholderia multivorans
           CGD2]
 gi|221213666|ref|ZP_03586640.1| transcription antitermination factor NusB [Burkholderia multivorans
           CGD1]
 gi|238687024|sp|A9AF25|NUSB_BURM1 RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|160343041|gb|ABX16127.1| NusB antitermination factor [Burkholderia multivorans ATCC 17616]
 gi|189333681|dbj|BAG42751.1| N utilization substance protein B [Burkholderia multivorans ATCC
           17616]
 gi|221166455|gb|EED98927.1| transcription antitermination factor NusB [Burkholderia multivorans
           CGD1]
 gi|221173698|gb|EEE06132.1| transcription antitermination factor NusB [Burkholderia multivorans
           CGD2]
 gi|221179008|gb|EEE11415.1| transcription antitermination factor NusB [Burkholderia multivorans
           CGD2M]
          Length = 145

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 42/147 (28%), Positives = 65/147 (44%), Gaps = 14/147 (9%)

Query: 10  LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF 69
           +K S RR  +R  A Q LYQ  +   S+ EI           D +L     Y   D    
Sbjct: 1   MKKSARR-QSRELATQGLYQWLLSNASSGEI-----------DAQLRGALGYDKADKALL 48

Query: 70  RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISE 129
             I+HGV+  ++H  L+ +   +      +L  +  ++L     EL      P  V+I+E
Sbjct: 49  DAILHGVI--REHATLVDALTPSLDRPIDQLSPVERAVLLIATFELTHHIETPYRVVINE 106

Query: 130 YVCIAHDFFYGDEPKFINAVLDKVSRK 156
            V +A  F   D  K++N VLDK++ K
Sbjct: 107 AVELAKTFGGSDGYKYVNGVLDKLAAK 133


>gi|306825791|ref|ZP_07459130.1| transcription antitermination factor NusB [Streptococcus sp. oral
           taxon 071 str. 73H25AP]
 gi|304432152|gb|EFM35129.1| transcription antitermination factor NusB [Streptococcus sp. oral
           taxon 071 str. 73H25AP]
          Length = 140

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 33/117 (28%), Positives = 54/117 (46%), Gaps = 8/117 (6%)

Query: 49  FCADTELDVESVYLH------VDLEWFRV-IIHGVMDRKQHIDLLISSCLTEKWSFSRLD 101
           F  D E      Y H      V L  F   ++ GV  +K+ +D  I+  L   W+  RL 
Sbjct: 25  FGTDVETACRFAYTHDREDTDVQLPAFLTGLVSGVQAKKEELDKQITQHLKAGWTIERLT 84

Query: 102 MILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEE 158
           ++  ++LR GV E I     P  V ++E + +A +F      +FIN +L +   +E+
Sbjct: 85  LVERNLLRLGVFE-ITSFDTPQLVAVNEAIELAKNFSDQKSARFINGLLSQFVTEEQ 140


>gi|300854298|ref|YP_003779282.1| nusB-like protein [Clostridium ljungdahlii DSM 13528]
 gi|300434413|gb|ADK14180.1| nusB-like protein [Clostridium ljungdahlii DSM 13528]
          Length = 158

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 25/88 (28%), Positives = 45/88 (51%), Gaps = 1/88 (1%)

Query: 63  HVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVP 122
           +VD+E+ + ++ G+ + K  +D  I   L   W+ +RL  +  +ILR    E +    +P
Sbjct: 60  NVDMEYVKRVVKGIEENKDSLDKEIEKYLR-NWTLNRLPKVDAAILRICTYEFLYEQDIP 118

Query: 123 VEVIISEYVCIAHDFFYGDEPKFINAVL 150
            +V I+E + +A  +       FIN VL
Sbjct: 119 EKVSINEAIELAKKYSSEKSAPFINGVL 146


>gi|291300632|ref|YP_003511910.1| NusB antitermination factor [Stackebrandtia nassauensis DSM 44728]
 gi|290569852|gb|ADD42817.1| NusB antitermination factor [Stackebrandtia nassauensis DSM 44728]
          Length = 147

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 30/87 (34%), Positives = 41/87 (47%)

Query: 72  IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
           ++ GV +    +D +I+ CL   W   R+  +  +ILR    EL     V   V ISE V
Sbjct: 60  LVDGVAEYLDEVDDVIARCLHSGWYLDRIAAVDRNILRVAAFELRYREDVDAAVAISEAV 119

Query: 132 CIAHDFFYGDEPKFINAVLDKVSRKEE 158
            IA      D P F+N VL  VS  E+
Sbjct: 120 KIAEVLCGEDSPAFVNGVLQSVSELEK 146


>gi|311748704|ref|ZP_07722489.1| antitermination factor [Algoriphagus sp. PR1]
 gi|126577236|gb|EAZ81484.1| antitermination factor [Algoriphagus sp. PR1]
          Length = 394

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 38/158 (24%), Positives = 69/158 (43%), Gaps = 17/158 (10%)

Query: 8   KDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLE 67
           KDL  +  + + R  A + L     +  S T  + E               ++    D E
Sbjct: 243 KDLNWTENKSVVRSLASKILKNAAQVDGSETNPLPEI--------------AMNWEEDKE 288

Query: 68  WFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVII 127
           +F+ I +  ++ +     LIS   T+ W   RL      I+   + E+    S+PV+V I
Sbjct: 289 FFQNIFNFTLENEAESKALISQK-TKNWDIDRLAFTDKIIISMALAEMKNFPSIPVKVSI 347

Query: 128 SEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRSGCV 165
           +EY+ I+  +      +F+N +LD +S+  E+  SG +
Sbjct: 348 NEYIDISKTYSTPKSKQFVNGLLDVMSK--ELTESGQI 383


>gi|257869052|ref|ZP_05648705.1| antitermination protein NusB [Enterococcus gallinarum EG2]
 gi|257803216|gb|EEV32038.1| antitermination protein NusB [Enterococcus gallinarum EG2]
          Length = 150

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 27/90 (30%), Positives = 46/90 (51%)

Query: 72  IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
           ++ GV   K+ +D +I S L   W   RL  +  +ILR  + E++   +VP  V ++E +
Sbjct: 60  LVAGVCQYKEALDEVIQSHLKSGWKIQRLSKMDVTILRIALYEMVYVDNVPNRVALNEAI 119

Query: 132 CIAHDFFYGDEPKFINAVLDKVSRKEEIKR 161
            +A  F      KF+N +L  V+ + E K 
Sbjct: 120 ELAKTFSDDQSRKFVNGILSNVNSEIESKN 149


>gi|284041158|ref|YP_003391088.1| NusB antitermination factor [Spirosoma linguale DSM 74]
 gi|283820451|gb|ADB42289.1| NusB antitermination factor [Spirosoma linguale DSM 74]
          Length = 378

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 23/64 (35%), Positives = 37/64 (57%)

Query: 93  EKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDK 152
           + W   R+ MI   IL+  V EL+   ++PV+V I+EY+ +A  +      KF+N +LD 
Sbjct: 297 KNWDVERVAMIDKIILKLAVCELLSFPNIPVKVTINEYIELAKAYSTPKSGKFVNGILDN 356

Query: 153 VSRK 156
           +S K
Sbjct: 357 LSEK 360


>gi|148993974|ref|ZP_01823344.1| transcription antitermination factor NusB [Streptococcus pneumoniae
           SP9-BS68]
 gi|168488122|ref|ZP_02712321.1| transcription antitermination factor NusB [Streptococcus pneumoniae
           SP195]
 gi|225858284|ref|YP_002739794.1| transcription antitermination protein NusB [Streptococcus
           pneumoniae 70585]
 gi|254772657|sp|C1C5G8|NUSB_STRP7 RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|147927563|gb|EDK78590.1| transcription antitermination factor NusB [Streptococcus pneumoniae
           SP9-BS68]
 gi|183573223|gb|EDT93751.1| transcription antitermination factor NusB [Streptococcus pneumoniae
           SP195]
 gi|225721195|gb|ACO17049.1| transcription antitermination factor NusB [Streptococcus pneumoniae
           70585]
 gi|301793671|emb|CBW36056.1| N utilization substance protein B homolog (NusB protein)
           [Streptococcus pneumoniae INV104]
 gi|332075276|gb|EGI85746.1| transcription antitermination factor NusB [Streptococcus pneumoniae
           GA17570]
          Length = 140

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 26/87 (29%), Positives = 46/87 (52%), Gaps = 1/87 (1%)

Query: 72  IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
           ++ GV  +K+ +D  I+  L   W+  RL ++  ++LR GV E I     P  V ++E +
Sbjct: 55  LVSGVQAKKEELDKQITQHLKVGWTIERLTLVERNLLRLGVFE-ITSFDTPQLVAVNEAI 113

Query: 132 CIAHDFFYGDEPKFINAVLDKVSRKEE 158
            +A DF      +FIN +L +   +E+
Sbjct: 114 ELAKDFSDQKSARFINGLLSQFVTEEQ 140


>gi|86741891|ref|YP_482291.1| NusB antitermination factor [Frankia sp. CcI3]
 gi|119390771|sp|Q2J830|NUSB_FRASC RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|86568753|gb|ABD12562.1| NusB antitermination factor [Frankia sp. CcI3]
          Length = 135

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 27/79 (34%), Positives = 42/79 (53%), Gaps = 1/79 (1%)

Query: 72  IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
           ++ GV++R+  ID  I+    E W+  R+  +  +ILR  VLEL+    VP  V I E V
Sbjct: 28  LVEGVVERRGEIDERIARY-AEGWTLERMPPVDRNILRIAVLELLWRPDVPDRVAIDEAV 86

Query: 132 CIAHDFFYGDEPKFINAVL 150
            +A +      P F+N +L
Sbjct: 87  ELAKNLSTHRSPAFVNGLL 105


>gi|294627702|ref|ZP_06706284.1| transcription antitermination protein NusB [Xanthomonas fuscans
           subsp. aurantifolii str. ICPB 11122]
 gi|294667130|ref|ZP_06732355.1| transcription antitermination protein NusB [Xanthomonas fuscans
           subsp. aurantifolii str. ICPB 10535]
 gi|292598054|gb|EFF42209.1| transcription antitermination protein NusB [Xanthomonas fuscans
           subsp. aurantifolii str. ICPB 11122]
 gi|292603140|gb|EFF46566.1| transcription antitermination protein NusB [Xanthomonas fuscans
           subsp. aurantifolii str. ICPB 10535]
          Length = 156

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 32/130 (24%), Positives = 58/130 (44%), Gaps = 13/130 (10%)

Query: 25  QALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHID 84
           QA+Y   I G    ++I+++             E  +   DL +F  ++ GV+  +  +D
Sbjct: 30  QAVYAWQISGGFAKQVIAQFAH-----------EQAHEVADLAYFENLVEGVLSNRAELD 78

Query: 85  LLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPK 144
             ++  L    S   +D I  ++LR    EL+    VP  V+I+E +  A  F       
Sbjct: 79  TALTPYLDR--SVEEVDAIERAVLRLAAYELLYRQDVPYRVVINEAIETAKRFGSEHGHT 136

Query: 145 FINAVLDKVS 154
           ++N VLD+ +
Sbjct: 137 YVNGVLDRAA 146


>gi|312891647|ref|ZP_07751157.1| NusB antitermination factor [Mucilaginibacter paludis DSM 18603]
 gi|311295831|gb|EFQ72990.1| NusB antitermination factor [Mucilaginibacter paludis DSM 18603]
          Length = 315

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 23/79 (29%), Positives = 44/79 (55%), Gaps = 4/79 (5%)

Query: 89  SCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINA 148
           +  T+ W   R+ M+   +++  + E +   S+PV+V I+EY+ I+ +F       FIN 
Sbjct: 232 TAKTQNWEPERIAMMDTLLMKMAIAEFVYFPSIPVKVTINEYLEISKEFSTPKSNSFING 291

Query: 149 VLDKV----SRKEEIKRSG 163
           +LDK+      + +IK++G
Sbjct: 292 ILDKILFELKAEGKIKKTG 310


>gi|88856244|ref|ZP_01130904.1| transcription termination factor [marine actinobacterium PHSC20C1]
 gi|88814563|gb|EAR24425.1| transcription termination factor [marine actinobacterium PHSC20C1]
          Length = 137

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 37/143 (25%), Positives = 63/143 (44%), Gaps = 9/143 (6%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           R  AR  A+  +Y  D+ G S  E ++  E+ R  +D        Y          ++ G
Sbjct: 4   RSKARKRALDLMYGADVRGESINEALA-TESSRALSDPARATSWAYAQQ-------VVVG 55

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
           + +    ID LI +  ++ W  +R+  +  ++LR  + E++    VP  V ISE V  A 
Sbjct: 56  ITEHGDEIDELIET-YSQGWPLNRMPAVDRALLRIALWEILYNDEVPAGVAISEAVESAK 114

Query: 136 DFFYGDEPKFINAVLDKVSRKEE 158
                D   FIN +L +++   E
Sbjct: 115 VHSTEDSAGFINGLLGRIAASNE 137


>gi|303232029|ref|ZP_07318732.1| ribosomal RNA small subunit methyltransferase B [Veillonella
           atypica ACS-049-V-Sch6]
 gi|302513135|gb|EFL55174.1| ribosomal RNA small subunit methyltransferase B [Veillonella
           atypica ACS-049-V-Sch6]
          Length = 452

 Score = 48.1 bits (113), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 37/139 (26%), Positives = 67/139 (48%), Gaps = 14/139 (10%)

Query: 20  RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79
           RL AV+AL  I+  G     ++ +Y +    +D           +D  +F  +++GV+ R
Sbjct: 14  RLLAVKALSDINRKGAYANIVLQDYISKYNLSD-----------LDRRFFTELVYGVVRR 62

Query: 80  KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139
           + ++D +I      K    +L  ++  ILR GV ++I    VP    ++E V +A     
Sbjct: 63  RNYLDAIIVHF--AKRPIKKLSSMVVEILRLGVYQIIYMDKVPESAAVNESVKLAKKLTR 120

Query: 140 GDEPKFINAVLDKVSRKEE 158
           G    F+NA+L  V R+++
Sbjct: 121 GLS-GFVNAILRSVIREQD 138


>gi|300767235|ref|ZP_07077147.1| transcription antitermination factor NusB [Lactobacillus plantarum
           subsp. plantarum ATCC 14917]
 gi|300495054|gb|EFK30210.1| transcription antitermination factor NusB [Lactobacillus plantarum
           subsp. plantarum ATCC 14917]
          Length = 139

 Score = 48.1 bits (113), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 26/90 (28%), Positives = 44/90 (48%)

Query: 68  WFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVII 127
           +   ++ GV + +  +D  I   L++KWS +RL      ILR    EL     VP +V +
Sbjct: 48  YLSTLVTGVREHQAELDAQIQPYLSQKWSLNRLAKTDLIILRIAFFELQFVDDVPAKVAV 107

Query: 128 SEYVCIAHDFFYGDEPKFINAVLDKVSRKE 157
           +E + +   F      KF++ VL KV + +
Sbjct: 108 NEAIELTKAFSDDRSRKFVSGVLGKVVKNQ 137


>gi|50086525|ref|YP_048035.1| transcription antitermination protein NusB [Acinetobacter sp. ADP1]
 gi|81612974|sp|Q6F6V2|NUSB_ACIAD RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|49532501|emb|CAG70213.1| transcription termination, L factor (N utilization substance
           protein B) [Acinetobacter sp. ADP1]
          Length = 149

 Score = 48.1 bits (113), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 28/100 (28%), Positives = 53/100 (53%), Gaps = 2/100 (2%)

Query: 57  VESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELI 116
           VE+    VDL ++  ++  V+ + + +D L+   L  +   + LD +  + LR G  EL 
Sbjct: 42  VENAMHKVDLGYYHELLTQVVAQHETLDTLLVPVLDRE--LNALDGVELATLRLGAYELR 99

Query: 117 ECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRK 156
           +   +P  V++ E + +A  F   D  K+IN VLD+++ +
Sbjct: 100 DHLEIPYRVVLDEAIELAKHFGGADSHKYINGVLDRLASR 139


>gi|259507351|ref|ZP_05750251.1| N utilization substance protein B family protein (protein NusB)
           [Corynebacterium efficiens YS-314]
 gi|259165062|gb|EEW49616.1| N utilization substance protein B family protein (protein NusB)
           [Corynebacterium efficiens YS-314]
          Length = 167

 Score = 47.8 bits (112), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 32/106 (30%), Positives = 47/106 (44%), Gaps = 5/106 (4%)

Query: 67  EWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVI 126
           E+   II+GV      ID L+S  + + W   RL  +  ++LR    E++    VPV   
Sbjct: 37  EYTEAIINGVAVELDTIDDLLSEHIADTWLLERLPSVDRAVLRVACWEMLYNPDVPVTTA 96

Query: 127 ISEYVCIAHDFFYGDEPKFINAVLDKVSRK-----EEIKRSGCVSA 167
           + E V IA  +       +INA LD ++ K     E     G VS 
Sbjct: 97  VVEAVEIASQYSTDKAGAYINATLDNMASKVDELRERAANPGAVSG 142


>gi|283853206|ref|ZP_06370458.1| NusB antitermination factor [Desulfovibrio sp. FW1012B]
 gi|283571379|gb|EFC19387.1| NusB antitermination factor [Desulfovibrio sp. FW1012B]
          Length = 167

 Score = 47.8 bits (112), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 26/86 (30%), Positives = 48/86 (55%), Gaps = 5/86 (5%)

Query: 72  IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
           ++ GV   ++ +D LI    ++ W  SR+  +  +ILR  + E++    +P+ V ++E +
Sbjct: 72  LVQGVWQNQRELDALIVK-FSKNWKLSRIAKVELTILRLALYEILHRSDIPLRVALNEAI 130

Query: 132 CIAHDFFYGDEP--KFINAVLDKVSR 155
            +A    YGDE    FIN +LD V++
Sbjct: 131 ELAKR--YGDENSRNFINGILDAVAK 154


>gi|254458717|ref|ZP_05072141.1| transcription antitermination factor NusB [Campylobacterales
           bacterium GD 1]
 gi|207084483|gb|EDZ61771.1| transcription antitermination factor NusB [Campylobacterales
           bacterium GD 1]
          Length = 134

 Score = 47.8 bits (112), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 44/141 (31%), Positives = 59/141 (41%), Gaps = 21/141 (14%)

Query: 19  ARLAAVQALYQIDIIGCS----TTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74
           AR+A V  LY  D+   S    T EI+ E +      D  L                +  
Sbjct: 7   ARMAVVSLLYAYDLGNGSIADHTDEILEEKKIRNKQKDFAL---------------ALFE 51

Query: 75  GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134
           GVM+  +  D  I   L E W F RL  I  + LR    E++    +   V+I+E V I 
Sbjct: 52  GVMENLEACDKAIIEHLKE-WDFERLGAIERATLRLATYEIL-FGELDSAVVINEAVEIT 109

Query: 135 HDFFYGDEPKFINAVLDKVSR 155
             F     PKFIN VLD +S+
Sbjct: 110 KAFGTEQSPKFINGVLDAISK 130


>gi|323705298|ref|ZP_08116873.1| NusB antitermination factor [Thermoanaerobacterium xylanolyticum
           LX-11]
 gi|323535200|gb|EGB24976.1| NusB antitermination factor [Thermoanaerobacterium xylanolyticum
           LX-11]
          Length = 139

 Score = 47.8 bits (112), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 39/141 (27%), Positives = 59/141 (41%), Gaps = 13/141 (9%)

Query: 15  RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74
            R  AR   V+ LYQ DI      +I       +F  D + + E  Y+            
Sbjct: 2   NRTQAREWLVKLLYQYDISKLEPQKIFD-----KFLEDNDPEDEKDYIEN-------TFF 49

Query: 75  GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134
           GV+    +ID  I   L + W  +R+  I  +I+R    E++    +P  V I+E V IA
Sbjct: 50  GVIKNVDNIDEKIKKYL-KNWDINRIAKIDLAIMRCSFYEILYSTDIPSSVSINEAVEIA 108

Query: 135 HDFFYGDEPKFINAVLDKVSR 155
             +     P FIN +L  + R
Sbjct: 109 KKYSTEKSPAFINGILGNLVR 129


>gi|313905346|ref|ZP_07838712.1| NusB antitermination factor [Eubacterium cellulosolvens 6]
 gi|313469816|gb|EFR65152.1| NusB antitermination factor [Eubacterium cellulosolvens 6]
          Length = 170

 Score = 47.8 bits (112), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 28/92 (30%), Positives = 45/92 (48%), Gaps = 1/92 (1%)

Query: 65  DLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVE 124
           D E+ R  +  + +    ID  I+   +  W  SR+  +  SI+R  V E+I    VP  
Sbjct: 72  DEEYIRTKLAKITEALPEIDEQINKA-SRGWKTSRMPKVDLSIIRLAVYEMIHDEDVPTG 130

Query: 125 VIISEYVCIAHDFFYGDEPKFINAVLDKVSRK 156
           V I+E V IA  +   +   FIN +L +++R 
Sbjct: 131 VAINEAVEIAKHYGGEESATFINGILGQIARN 162


>gi|148272974|ref|YP_001222535.1| putative antitermination protein [Clavibacter michiganensis subsp.
           michiganensis NCPPB 382]
 gi|166215681|sp|A5CRY5|NUSB_CLAM3 RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|147830904|emb|CAN01848.1| putative antitermination protein [Clavibacter michiganensis subsp.
           michiganensis NCPPB 382]
          Length = 137

 Score = 47.8 bits (112), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 40/139 (28%), Positives = 67/139 (48%), Gaps = 9/139 (6%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           R  AR  A+  LY  DI G S    ++  E  R  A  E D ++ +     ++ R I  G
Sbjct: 4   RTKARKRALDVLYVADIRGESIPATLA-VEQQRAAA--EPDRQASW-----QYAREIAEG 55

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
            +  +  ID LI +  +  W+ +R+  +  +ILR G+ E++    VP  V ISE V +A 
Sbjct: 56  FVAHQDEIDELIET-YSVNWTLARMPAVDRAILRIGIWEILFNADVPHGVAISESVDLAS 114

Query: 136 DFFYGDEPKFINAVLDKVS 154
                +   F+N +L +++
Sbjct: 115 SLSTDESASFVNGMLARIA 133


>gi|227873694|ref|ZP_03991927.1| conserved hypothetical protein [Oribacterium sinus F0268]
 gi|227840462|gb|EEJ50859.1| conserved hypothetical protein [Oribacterium sinus F0268]
          Length = 185

 Score = 47.8 bits (112), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 25/82 (30%), Positives = 45/82 (54%), Gaps = 1/82 (1%)

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
           +++R  H+D  I+  +TE W+ SR+     ++LR  + EL      P +V+ +E V IA 
Sbjct: 67  ILERLPHLDERIN-AVTEGWTTSRMSKTDLTVLRLALYELEYQEETPDKVVFNEAVEIAK 125

Query: 136 DFFYGDEPKFINAVLDKVSRKE 157
            +   D   F+N VL +++ K+
Sbjct: 126 KYGGADSGSFVNGVLARITGKQ 147


>gi|269926747|ref|YP_003323370.1| NusB antitermination factor [Thermobaculum terrenum ATCC BAA-798]
 gi|269790407|gb|ACZ42548.1| NusB antitermination factor [Thermobaculum terrenum ATCC BAA-798]
          Length = 153

 Score = 47.8 bits (112), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 24/80 (30%), Positives = 43/80 (53%), Gaps = 1/80 (1%)

Query: 75  GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134
           GV   ++  D LI+   T  W+  ++  +  +ILR  V E++  + VP+   I+E V +A
Sbjct: 60  GVWQNRKEYDSLITR-FTPTWTIDQMAKVDRNILRIAVHEMLRRNDVPIAAAINEAVELA 118

Query: 135 HDFFYGDEPKFINAVLDKVS 154
            ++     PKF+N VL  ++
Sbjct: 119 KEYGAEASPKFVNGVLGAIA 138


>gi|81428290|ref|YP_395290.1| transcription antitermination protein NusB [Lactobacillus sakei
           subsp. sakei 23K]
 gi|119390779|sp|Q38XV0|NUSB_LACSS RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|78609932|emb|CAI54979.1| Ribosomal RNA transcription antitermination protein NusB
           [Lactobacillus sakei subsp. sakei 23K]
          Length = 142

 Score = 47.8 bits (112), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 35/133 (26%), Positives = 58/133 (43%), Gaps = 4/133 (3%)

Query: 20  RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79
           R AA Q L+ ++     + E+   Y+      D + D E V       +   ++ GV + 
Sbjct: 10  RQAAFQVLFTLN--ANQSLELEDAYQAV-LTMD-QFDAEEVTPVEVPAYLAFLVSGVTEN 65

Query: 80  KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139
           +  +D  ++  L + W  SRL      ILR G+ E+      P +V ++E + +A  F  
Sbjct: 66  QAALDAALTPYLKKGWQLSRLAKPDLIILRLGLFEMQNSTEAPAKVALNEALELAKQFTD 125

Query: 140 GDEPKFINAVLDK 152
                FIN VL K
Sbjct: 126 DQAKGFINGVLSK 138


>gi|162447338|ref|YP_001620470.1| transcription antitermination factor [Acholeplasma laidlawii PG-8A]
 gi|161985445|gb|ABX81094.1| transcription antitermination factor [Acholeplasma laidlawii PG-8A]
          Length = 126

 Score = 47.8 bits (112), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 29/108 (26%), Positives = 64/108 (59%), Gaps = 12/108 (11%)

Query: 59  SVYLHVDL-------EWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAG 111
           S++ HVD        +  + +I+G++D  +H+D LISS + + ++  RL+++  +I+R  
Sbjct: 19  SLHKHVDFLDYTLLEDASKEVINGMIDELEHVDFLISSTI-KNYTIDRLNLVDLAIIRVA 77

Query: 112 VLELIECHSVPVEVIISEYVCIAHDFFYGDEP---KFINAVLDKVSRK 156
           V  L++    P E++I+E + ++ ++   D+    KF N+++D + +K
Sbjct: 78  VYALLKEID-PAEIVINEAIELSKEYTDLDDEKQHKFNNSLIDNIYKK 124


>gi|328955583|ref|YP_004372916.1| NusB antitermination factor [Coriobacterium glomerans PW2]
 gi|328455907|gb|AEB07101.1| NusB antitermination factor [Coriobacterium glomerans PW2]
          Length = 198

 Score = 47.8 bits (112), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 42/158 (26%), Positives = 76/158 (48%), Gaps = 27/158 (17%)

Query: 10  LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYL--HVDLE 67
           +K++  R +AR  A+Q L+Q + + CS  E++                E  YL     LE
Sbjct: 3   IKVNRGRTLARSQALQLLFQAEALMCSLDEVL----------------EGDYLLSQGPLE 46

Query: 68  WFRV-IIHGVMDRKQHIDLLISS--CLTEKWSFSRLDMILCSILRAGVLELIECHSVPVE 124
            + + ++ G      H+D + S+   +++ W  SR+     ++LR  + E+      P+E
Sbjct: 47  PYALELVRGCY---AHLDRIDSALCAVSQNWELSRMPGSDRNLLRLAIYEM-RLADEPIE 102

Query: 125 --VIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIK 160
             V+I+E V IA  +   +   F+N VL ++SR EE+ 
Sbjct: 103 DAVVINEAVEIAKAYGTDESAGFVNGVLGEISRAEELP 140


>gi|126664007|ref|ZP_01735001.1| putative N utilization substance protein [Flavobacteria bacterium
           BAL38]
 gi|126623956|gb|EAZ94650.1| putative N utilization substance protein [Flavobacteria bacterium
           BAL38]
          Length = 302

 Score = 47.8 bits (112), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 41/142 (28%), Positives = 69/142 (48%), Gaps = 16/142 (11%)

Query: 31  DIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF------RVIIHGVMDRKQHID 84
           D+ G +T  I+ + +  +   DT L V  VY   D + F      R +++ V   K++ID
Sbjct: 164 DLPGINTL-IVKQIKQLKSEKDT-LIVPKVYKDEDDKDFVKNLFRRTVLNEVELSKEYID 221

Query: 85  LLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPK 144
                  T  W   R+  I   IL+  + EL++  S+P +V I+EY+ IA ++       
Sbjct: 222 K------TPNWDVERIAEIDTIILKMAICELLKFPSIPTKVTINEYLEIAKEYSTPKSSI 275

Query: 145 FINAVLDKVSRKEEIKRSGCVS 166
           FIN +LD + +  E  R G ++
Sbjct: 276 FINGILDNLVK--EFNRDGKLN 295


>gi|323705503|ref|ZP_08117078.1| sun protein [Thermoanaerobacterium xylanolyticum LX-11]
 gi|323535405|gb|EGB25181.1| sun protein [Thermoanaerobacterium xylanolyticum LX-11]
          Length = 447

 Score = 47.8 bits (112), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 30/92 (32%), Positives = 50/92 (54%), Gaps = 2/92 (2%)

Query: 64  VDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPV 123
           +D  + + I+ G ++RKQ +D +I  C + K S  ++D  +  IL  G+ ++I    VP 
Sbjct: 37  IDKSFIKEIVFGTIERKQTLDQIIDHC-SSKGS-KKIDNKILIILEMGLYQIIYMDKVPQ 94

Query: 124 EVIISEYVCIAHDFFYGDEPKFINAVLDKVSR 155
              ISE V +A ++      KF+NAVL   +R
Sbjct: 95  YAAISEAVNLAKEYAGIHASKFVNAVLRNYAR 126


>gi|153952373|ref|YP_001398575.1| transcription antitermination protein NusB [Campylobacter jejuni
           subsp. doylei 269.97]
 gi|166215677|sp|A7H4Z5|NUSB_CAMJD RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|152939819|gb|ABS44560.1| transcription antitermination factor NusB [Campylobacter jejuni
           subsp. doylei 269.97]
          Length = 132

 Score = 47.8 bits (112), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 25/78 (32%), Positives = 45/78 (57%), Gaps = 2/78 (2%)

Query: 74  HGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCI 133
           HG++D   +ID  ++S L +    + L  +  +ILR G  EL+  ++ P  ++I+E + +
Sbjct: 50  HGILDNLNNIDETLNSFLNDNQ-ITALGHVERAILRLGAYELLFTNT-PSAIVINEAIEL 107

Query: 134 AHDFFYGDEPKFINAVLD 151
           A +    + PKF+N VLD
Sbjct: 108 AKELANDNSPKFMNGVLD 125


>gi|322382777|ref|ZP_08056621.1| transcription antitermination-like protein NusB [Paenibacillus
           larvae subsp. larvae B-3650]
 gi|321153246|gb|EFX45692.1| transcription antitermination-like protein NusB [Paenibacillus
           larvae subsp. larvae B-3650]
          Length = 133

 Score = 47.8 bits (112), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 22/82 (26%), Positives = 43/82 (52%), Gaps = 1/82 (1%)

Query: 72  IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
           ++ G +  ++ ID ++S  L + W   RL  +   +LR    E++     P +V+++E +
Sbjct: 42  LVEGTLTNRERIDQILSEYL-KGWQMDRLSKVDREVLRMAAYEMLYRQDTPPKVVVNEAI 100

Query: 132 CIAHDFFYGDEPKFINAVLDKV 153
            +A  F   +  KF+N VL K+
Sbjct: 101 ELAKHFGTDESGKFVNGVLGKL 122


>gi|33594361|ref|NP_882005.1| transcription antitermination protein NusB [Bordetella pertussis
           Tohama I]
 gi|33595544|ref|NP_883187.1| transcription antitermination protein NusB [Bordetella
           parapertussis 12822]
 gi|33599942|ref|NP_887502.1| transcription antitermination protein NusB [Bordetella
           bronchiseptica RB50]
 gi|39931820|sp|Q7VTN3|NUSB_BORPE RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|39931833|sp|Q7W142|NUSB_BORPA RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|39931858|sp|Q7WNT2|NUSB_BORBR RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|33564436|emb|CAE43747.1| N utilization substance protein B [Bordetella pertussis Tohama I]
 gi|33565622|emb|CAE40268.1| N utilization substance protein B [Bordetella parapertussis]
 gi|33567539|emb|CAE31452.1| N utilization substance protein B [Bordetella bronchiseptica RB50]
 gi|332383772|gb|AEE68619.1| transcription antitermination protein NusB [Bordetella pertussis
           CS]
          Length = 154

 Score = 47.8 bits (112), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 36/137 (26%), Positives = 61/137 (44%), Gaps = 21/137 (15%)

Query: 24  VQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHI 83
           +Q +Y   + G   T+   E + +   A+        +   D +WF+ ++HGV+      
Sbjct: 19  LQGVYAWLLRGGEGTQDAGEIDAHLRDAED-------FSEADAQWFKTLLHGVLRE---- 67

Query: 84  DLLISSCLTEKW------SFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDF 137
               +  L E++        + L  +   IL  G  EL+    VP +V I+E V +A  F
Sbjct: 68  ----APVLRERFLPYIDRPLAELSPVEHGILLIGSFELMHHVEVPYKVAINEAVELAKSF 123

Query: 138 FYGDEPKFINAVLDKVS 154
              D  KF+N VLDK++
Sbjct: 124 GGTDGFKFVNGVLDKLA 140


>gi|224417753|ref|ZP_03655759.1| transcription antitermination protein NusB [Helicobacter canadensis
           MIT 98-5491]
 gi|253827096|ref|ZP_04869981.1| transcription antitermination protein NusB [Helicobacter canadensis
           MIT 98-5491]
 gi|313141294|ref|ZP_07803487.1| transcription antitermination factor NusB [Helicobacter canadensis
           MIT 98-5491]
 gi|253510502|gb|EES89161.1| transcription antitermination protein NusB [Helicobacter canadensis
           MIT 98-5491]
 gi|313130325|gb|EFR47942.1| transcription antitermination factor NusB [Helicobacter canadensis
           MIT 98-5491]
          Length = 184

 Score = 47.8 bits (112), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 28/93 (30%), Positives = 54/93 (58%), Gaps = 2/93 (2%)

Query: 67  EWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVI 126
           ++  ++ +GV++  + +DL I+  L E W F+++  +  +ILR GV E I  +++   + 
Sbjct: 44  DFANLLFNGVIENLESLDLRIAHQL-ESWDFTKIGDMEKAILRLGVYE-IAFNNLDKAIA 101

Query: 127 ISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEI 159
           I+E + +A  F      KFIN VLD +++  +I
Sbjct: 102 INEALELAKTFGNEASAKFINGVLDNIAKNLQI 134


>gi|189501850|ref|YP_001957567.1| hypothetical protein Aasi_0422 [Candidatus Amoebophilus asiaticus
           5a2]
 gi|189497291|gb|ACE05838.1| hypothetical protein Aasi_0422 [Candidatus Amoebophilus asiaticus
           5a2]
          Length = 378

 Score = 47.8 bits (112), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 26/84 (30%), Positives = 48/84 (57%), Gaps = 1/84 (1%)

Query: 72  IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
           +I   +++++ ID LI   + + WS  R  ++   I++ G+ E+    S+P +V I+EYV
Sbjct: 294 LIATALEQEKFIDNLIQQHI-KNWSIERTVLLDRIIIKMGLCEMKYFDSIPTKVAINEYV 352

Query: 132 CIAHDFFYGDEPKFINAVLDKVSR 155
            +A  +      KFIN VLD +++
Sbjct: 353 DLAKKYSTAKSSKFINGVLDTIAK 376


>gi|227530526|ref|ZP_03960575.1| transcription antitermination protein NusB [Lactobacillus vaginalis
           ATCC 49540]
 gi|227349532|gb|EEJ39823.1| transcription antitermination protein NusB [Lactobacillus vaginalis
           ATCC 49540]
          Length = 136

 Score = 47.8 bits (112), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 30/103 (29%), Positives = 48/103 (46%), Gaps = 2/103 (1%)

Query: 58  ESVYLHVD--LEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLEL 115
           ES+  H D    + + ++ GV + ++ +D  I+  L   W  +RL      ILR  + E+
Sbjct: 32  ESLPSHADKIPAYLQTLVEGVSEHQEKLDEQITQLLASGWEINRLAQTDLVILRLALYEI 91

Query: 116 IECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEE 158
                VP  V I+E + +A  +      KFIN  L K  R+ E
Sbjct: 92  QFVDEVPTVVAINEALELAKTYSNDKSRKFINGALGKFERQLE 134


>gi|255531305|ref|YP_003091677.1| NusB/RsmB/TIM44 [Pedobacter heparinus DSM 2366]
 gi|255344289|gb|ACU03615.1| NusB/RsmB/TIM44 [Pedobacter heparinus DSM 2366]
          Length = 316

 Score = 47.8 bits (112), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 25/98 (25%), Positives = 53/98 (54%), Gaps = 4/98 (4%)

Query: 71  VIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEY 130
           + +H +   K++  L+     T+ W   R+ ++   +++  + EL+   S+PV+V I+EY
Sbjct: 216 LFVHTLKSDKEYQGLIAER--TKNWESERIALMDTILMKMAICELMNFPSIPVKVTINEY 273

Query: 131 VCIAHDFFYGDEPKFINAVLDKVSRKEEIKRSGCVSAI 168
           + ++ D+       FIN +LDK+    ++KR+  +  I
Sbjct: 274 LDLSKDYSTPKSNSFINGILDKILG--DLKRTNSIHKI 309


>gi|196232646|ref|ZP_03131498.1| NusB antitermination factor [Chthoniobacter flavus Ellin428]
 gi|196223408|gb|EDY17926.1| NusB antitermination factor [Chthoniobacter flavus Ellin428]
          Length = 151

 Score = 47.8 bits (112), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 43/154 (27%), Positives = 65/154 (42%), Gaps = 21/154 (13%)

Query: 15  RRGIARLAAVQALYQIDIIGCSTTE------IISEYETYRFCADTELDVESVYLHVDLEW 68
           +R   R AAVQ LYQID+ G +         + S          T +  E + L      
Sbjct: 3   KRREGREAAVQYLYQIDLSGETPVNAEQFWMLRSGPGKAPVAPKTRIFAEQLAL------ 56

Query: 69  FRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIIS 128
                 GV    + ID  I    T  +   RL ++  +ILR  + EL+    V   +II+
Sbjct: 57  ------GVRKHLEEIDGYIKKY-TANYELDRLAVVDRNILRVAIYELLHSPDVAPVIIIN 109

Query: 129 EYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRS 162
           E + +A  F       F+N +LD++  KEE+ R 
Sbjct: 110 EAIEVAKKFGTDKSGGFVNGILDRI--KEEVGRP 141


>gi|313893390|ref|ZP_07826962.1| ribosomal RNA small subunit methyltransferase B [Veillonella sp.
           oral taxon 158 str. F0412]
 gi|313442031|gb|EFR60451.1| ribosomal RNA small subunit methyltransferase B [Veillonella sp.
           oral taxon 158 str. F0412]
          Length = 451

 Score = 47.8 bits (112), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 39/137 (28%), Positives = 63/137 (45%), Gaps = 14/137 (10%)

Query: 20  RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79
           RL AV+AL  I+  G      + EY      +D           +D  +F  +++GV+ R
Sbjct: 13  RLLAVKALSDINRNGAYANIKLQEYLQKYHLSD-----------LDRRFFTELVYGVIRR 61

Query: 80  KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139
           K ++D +I      K    +L  ++  ILR G+ ++I    VP    ++E V +A     
Sbjct: 62  KNYLDAIIVHF--AKRPLKKLSSMVVEILRLGIYQIIYMDKVPESAAVNESVKLAKKLTR 119

Query: 140 GDEPKFINAVLDKVSRK 156
           G    F+NAVL  V R+
Sbjct: 120 GLS-GFVNAVLRSVLRE 135


>gi|225377103|ref|ZP_03754324.1| hypothetical protein ROSEINA2194_02748 [Roseburia inulinivorans DSM
           16841]
 gi|225211008|gb|EEG93362.1| hypothetical protein ROSEINA2194_02748 [Roseburia inulinivorans DSM
           16841]
          Length = 130

 Score = 47.8 bits (112), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 25/90 (27%), Positives = 48/90 (53%), Gaps = 1/90 (1%)

Query: 65  DLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVE 124
           D E+     H ++++   ID  I+  ++E W   R+  +  +++R  V E+     +PV+
Sbjct: 42  DKEYISNKFHNIVEKIDEIDAAINE-VSEGWKTRRMGKVDLTLIRLAVYEMKYEDDIPVK 100

Query: 125 VIISEYVCIAHDFFYGDEPKFINAVLDKVS 154
           V I+E V +A  +   + P F+N VL K++
Sbjct: 101 VAINEAVELAKQYGTDESPAFVNGVLAKLA 130


>gi|86151316|ref|ZP_01069531.1| transcription antitermination factor NusB [Campylobacter jejuni
           subsp. jejuni 260.94]
 gi|86153756|ref|ZP_01071959.1| transcription antitermination factor NusB [Campylobacter jejuni
           subsp. jejuni HB93-13]
 gi|121612229|ref|YP_001000093.1| transcription antitermination protein NusB [Campylobacter jejuni
           subsp. jejuni 81-176]
 gi|157414677|ref|YP_001481933.1| transcription antitermination protein NusB [Campylobacter jejuni
           subsp. jejuni 81116]
 gi|283955805|ref|ZP_06373296.1| transcription antitermination factor NusB [Campylobacter jejuni
           subsp. jejuni 1336]
 gi|315123942|ref|YP_004065946.1| transcription antitermination factor NusB [Campylobacter jejuni
           subsp. jejuni ICDCCJ07001]
 gi|166215678|sp|A1VYA2|NUSB_CAMJJ RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|172047054|sp|A8FKG9|NUSB_CAMJ8 RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|85841663|gb|EAQ58910.1| transcription antitermination factor NusB [Campylobacter jejuni
           subsp. jejuni 260.94]
 gi|85842717|gb|EAQ59929.1| transcription antitermination factor NusB [Campylobacter jejuni
           subsp. jejuni HB93-13]
 gi|87250180|gb|EAQ73138.1| transcription antitermination factor NusB [Campylobacter jejuni
           subsp. jejuni 81-176]
 gi|157385641|gb|ABV51956.1| transcription termination protein [Campylobacter jejuni subsp.
           jejuni 81116]
 gi|283792760|gb|EFC31538.1| transcription antitermination factor NusB [Campylobacter jejuni
           subsp. jejuni 1336]
 gi|307747317|gb|ADN90587.1| N utilization substance protein B-like protein [Campylobacter
           jejuni subsp. jejuni M1]
 gi|315017664|gb|ADT65757.1| transcription antitermination factor NusB [Campylobacter jejuni
           subsp. jejuni ICDCCJ07001]
 gi|315932685|gb|EFV11615.1| transcription antitermination factor NusB [Campylobacter jejuni
           subsp. jejuni 327]
          Length = 132

 Score = 47.8 bits (112), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 26/78 (33%), Positives = 44/78 (56%), Gaps = 2/78 (2%)

Query: 74  HGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCI 133
           HG++D   +ID  ++S L +    + L  +  +ILR G  EL+   + P  ++I+E + +
Sbjct: 50  HGILDNLNNIDETLNSFLNDNQ-ITALGHVERAILRLGAYELLFTDT-PSAIVINEAIEL 107

Query: 134 AHDFFYGDEPKFINAVLD 151
           A +    + PKFIN VLD
Sbjct: 108 AKELANDNSPKFINGVLD 125


>gi|258654403|ref|YP_003203559.1| NusB antitermination factor [Nakamurella multipartita DSM 44233]
 gi|258557628|gb|ACV80570.1| NusB antitermination factor [Nakamurella multipartita DSM 44233]
          Length = 144

 Score = 47.8 bits (112), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 23/83 (27%), Positives = 45/83 (54%), Gaps = 1/83 (1%)

Query: 72  IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
           ++ G ++ +  +D L++   +  W+  R+  +  +ILR  V EL+    VP  V+++E V
Sbjct: 54  LVRGFVEHQDRVDTLLAEH-SRGWTVDRMPAVDRAILRIAVYELLYSTEVPPAVVVNEAV 112

Query: 132 CIAHDFFYGDEPKFINAVLDKVS 154
             A      D P+F+N VL +++
Sbjct: 113 DSAKILSTDDSPRFVNGVLGQIA 135


>gi|256825101|ref|YP_003149061.1| NusB antitermination factor [Kytococcus sedentarius DSM 20547]
 gi|256688494|gb|ACV06296.1| NusB antitermination factor [Kytococcus sedentarius DSM 20547]
          Length = 137

 Score = 47.4 bits (111), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 25/84 (29%), Positives = 45/84 (53%), Gaps = 1/84 (1%)

Query: 72  IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
           ++ GV+     I+  +SS  ++ WS  R+  +  +ILR G  E++    VP  V ISE V
Sbjct: 49  LVEGVVSHWASINDALSSW-SQGWSLERMPAVDRAILRLGTYEIVWAEDVPDAVAISEAV 107

Query: 132 CIAHDFFYGDEPKFINAVLDKVSR 155
            +A      + P F++ +L ++S+
Sbjct: 108 NLAAHLSTDESPNFVSGLLTRISQ 131


>gi|319760371|ref|YP_004124309.1| N utilization substance protein B-like protein [Candidatus
           Blochmannia vafer str. BVAF]
 gi|318039085|gb|ADV33635.1| N utilization substance protein B-like protein [Candidatus
           Blochmannia vafer str. BVAF]
          Length = 140

 Score = 47.4 bits (111), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 36/144 (25%), Positives = 70/144 (48%), Gaps = 25/144 (17%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHV------DLEWF 69
           R +ARL A+QALY                 +++F  +  +++E+  + +      D+ +F
Sbjct: 6   RRLARLCALQALY-----------------SWQFSKNDLIEIENYIVSIQNIQNFDISYF 48

Query: 70  RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISE 129
           R +  GV++    +D L+   L        +  +  S+L   + EL +C+ +P +V+++E
Sbjct: 49  RELYIGVINCISDLDKLMIPYLFR--DLKTIGYVEYSVLLIALFELTQCYDIPYKVVMNE 106

Query: 130 YVCIAHDFFYGDEPKFINAVLDKV 153
            + +A  F      KFIN VL+K+
Sbjct: 107 AIELAKIFGSEKSYKFINGVLNKI 130


>gi|168485566|ref|ZP_02710074.1| transcription antitermination factor NusB [Streptococcus pneumoniae
           CDC1087-00]
 gi|183571084|gb|EDT91612.1| transcription antitermination factor NusB [Streptococcus pneumoniae
           CDC1087-00]
          Length = 140

 Score = 47.4 bits (111), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 25/87 (28%), Positives = 46/87 (52%), Gaps = 1/87 (1%)

Query: 72  IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
           ++ G+  +K+ +D  I+  L   W+  RL ++  ++LR GV E I     P  V ++E +
Sbjct: 55  LVSGIQAKKEELDKQITQHLKVGWTIERLTLVERNLLRLGVFE-ITSFDTPQLVAVNEAI 113

Query: 132 CIAHDFFYGDEPKFINAVLDKVSRKEE 158
            +A DF      +FIN +L +   +E+
Sbjct: 114 ELAKDFSDQKSARFINGLLSQFVTEEQ 140


>gi|298209147|ref|YP_003717326.1| putative N utilization substance protein [Croceibacter atlanticus
           HTCC2559]
 gi|83849074|gb|EAP86943.1| putative N utilization substance protein [Croceibacter atlanticus
           HTCC2559]
          Length = 302

 Score = 47.4 bits (111), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 24/80 (30%), Positives = 44/80 (55%), Gaps = 2/80 (2%)

Query: 89  SCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINA 148
           S  T  W   R+  +   +++  + E ++  S+PV+V I+EY+ IA ++       FIN 
Sbjct: 220 SKKTPNWDKERIAELDAVLMKMAICEFVKFPSIPVKVTINEYLEIAKEYSTPKSSIFING 279

Query: 149 VLDKVSRKEEIKRSGCVSAI 168
           +LDK+S+  E K  G ++ +
Sbjct: 280 ILDKISK--EFKADGKLNKM 297


>gi|255038668|ref|YP_003089289.1| NusB antitermination factor [Dyadobacter fermentans DSM 18053]
 gi|254951424|gb|ACT96124.1| NusB antitermination factor [Dyadobacter fermentans DSM 18053]
          Length = 388

 Score = 47.4 bits (111), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 24/75 (32%), Positives = 43/75 (57%), Gaps = 4/75 (5%)

Query: 93  EKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLD- 151
           + W   R+ ++   IL+  + ELI    +PV+V I+E++ IA  +      KF+N VLD 
Sbjct: 307 KNWELERIALVDLIILKTALAELIHFPGIPVKVTINEFIEIAKRYSTPKSGKFVNGVLDV 366

Query: 152 ---KVSRKEEIKRSG 163
              K++++  I++SG
Sbjct: 367 LSVKLAKEGVIRKSG 381


>gi|229817326|ref|ZP_04447608.1| hypothetical protein BIFANG_02588 [Bifidobacterium angulatum DSM
           20098]
 gi|229785115|gb|EEP21229.1| hypothetical protein BIFANG_02588 [Bifidobacterium angulatum DSM
           20098]
          Length = 137

 Score = 47.4 bits (111), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 39/138 (28%), Positives = 60/138 (43%), Gaps = 12/138 (8%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           R  AR  A+  LY+ D  G     ++ E       A T L           E+   I+ G
Sbjct: 3   RSTARKRALNTLYEADEKGQDILSLLEERIAV-PGAQTPLP----------EYAIEIVRG 51

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
           V + ++ ID  +  C T  W  SR+ ++  +ILR    E++    VP  V I E + +A 
Sbjct: 52  VAEHRRDIDEKLDECST-GWKISRMGVVDRNILRIAAWEIMYNDEVPDRVAIDEALGLAK 110

Query: 136 DFFYGDEPKFINAVLDKV 153
               G+ P FI+ +L  V
Sbjct: 111 TLCDGESPAFIHGLLSAV 128


>gi|78357481|ref|YP_388930.1| transcription antitermination factor NusB [Desulfovibrio
           desulfuricans subsp. desulfuricans str. G20]
 gi|119390767|sp|Q30YL1|NUSB_DESDG RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|78219886|gb|ABB39235.1| transcription antitermination factor NusB [Desulfovibrio
           desulfuricans subsp. desulfuricans str. G20]
          Length = 154

 Score = 47.4 bits (111), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 38/147 (25%), Positives = 64/147 (43%), Gaps = 9/147 (6%)

Query: 13  SHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLH-VDLEWFRV 71
           S RR  +R  A Q LY ++         + E     +CA  ++       H V   W   
Sbjct: 8   SSRRS-SRALAFQVLYGLNFSPAKDLAQLQEA----YCASPDVSDRGGEAHPVGFAW--E 60

Query: 72  IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
           +I G    ++ +D +I+    + W   R+  I  +ILR  V E++    VP +V I+E +
Sbjct: 61  LIEGTWTNQKALDEIITR-FAQNWRVERIGKIELTILRLAVYEMLYRADVPPKVAINEGI 119

Query: 132 CIAHDFFYGDEPKFINAVLDKVSRKEE 158
            ++  F       FIN +LD  ++  E
Sbjct: 120 ELSKQFGDDKSRNFINGILDAAAKALE 146


>gi|269956498|ref|YP_003326287.1| NusB antitermination factor [Xylanimonas cellulosilytica DSM 15894]
 gi|269305179|gb|ACZ30729.1| NusB antitermination factor [Xylanimonas cellulosilytica DSM 15894]
          Length = 138

 Score = 47.4 bits (111), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 24/82 (29%), Positives = 43/82 (52%), Gaps = 1/82 (1%)

Query: 72  IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
           I+ GV+  ++ ID L+ +  +  W+  R+  +  ++LR G  E++    VP  V I E V
Sbjct: 49  IVEGVVAHRERIDELLETY-SNGWTIERMPAVDRALLRIGAWEILFNDDVPDAVAIDEAV 107

Query: 132 CIAHDFFYGDEPKFINAVLDKV 153
            +A      D P F+N +L ++
Sbjct: 108 DLAAQLSTDDSPSFVNGLLGRI 129


>gi|332670495|ref|YP_004453503.1| NusB antitermination factor [Cellulomonas fimi ATCC 484]
 gi|332339533|gb|AEE46116.1| NusB antitermination factor [Cellulomonas fimi ATCC 484]
          Length = 138

 Score = 47.4 bits (111), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 33/138 (23%), Positives = 63/138 (45%), Gaps = 12/138 (8%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           R  AR  A+  L++ D  G     ++++       A+   +       VDL      + G
Sbjct: 4   RTKARKRALDVLFEADQRGLDPVTLLAQR-----VAEPGTEAALPQYSVDL------VEG 52

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
           V+ R++ ID L+++     W+  R+  +  ++LR G  E++    VP  V + E V +A 
Sbjct: 53  VIARRERIDELLATH-AHGWTIERMPAVDRALLRLGTWEILFNDDVPDAVAVDEAVELAR 111

Query: 136 DFFYGDEPKFINAVLDKV 153
                + P F+N +L ++
Sbjct: 112 SLSTDESPSFVNGLLGRI 129


>gi|283955145|ref|ZP_06372647.1| transcription antitermination factor NusB [Campylobacter jejuni
           subsp. jejuni 414]
 gi|283793358|gb|EFC32125.1| transcription antitermination factor NusB [Campylobacter jejuni
           subsp. jejuni 414]
          Length = 132

 Score = 47.4 bits (111), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 26/78 (33%), Positives = 43/78 (55%), Gaps = 2/78 (2%)

Query: 74  HGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCI 133
           HG++D   +ID  ++S L +    + L  +  +ILR G  EL+     P  ++I+E + +
Sbjct: 50  HGILDNLSNIDETLNSFLNDNQ-ITALGHVERAILRLGAYELL-FSDTPSAIVINEAIEL 107

Query: 134 AHDFFYGDEPKFINAVLD 151
           A +    + PKFIN VLD
Sbjct: 108 AKELANDNSPKFINGVLD 125


>gi|94264516|ref|ZP_01288303.1| NusB antitermination factor [delta proteobacterium MLMS-1]
 gi|94265524|ref|ZP_01289272.1| NusB antitermination factor [delta proteobacterium MLMS-1]
 gi|93453965|gb|EAT04311.1| NusB antitermination factor [delta proteobacterium MLMS-1]
 gi|93455075|gb|EAT05302.1| NusB antitermination factor [delta proteobacterium MLMS-1]
          Length = 135

 Score = 47.4 bits (111), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 35/136 (25%), Positives = 56/136 (41%), Gaps = 12/136 (8%)

Query: 19  ARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMD 78
           AR  A+QALYQ +++G    + +        C + E    +      L + R ++ G+ +
Sbjct: 9   ARELALQALYQGEMLGVGALDTLPS-----LCENFEASRRA------LPYARELLAGI-E 56

Query: 79  RKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFF 138
                           W   R+  I  +++R  V E+     VP  V I E V +A  + 
Sbjct: 57  AHGEAIDAAIDAAAANWRLDRMSYIDRNLMRIAVYEMRWRDEVPAGVAIDEAVELAKRYG 116

Query: 139 YGDEPKFINAVLDKVS 154
             D P FIN +LD V 
Sbjct: 117 ADDSPAFINGILDAVG 132


>gi|255020761|ref|ZP_05292820.1| Transcription termination protein NusB [Acidithiobacillus caldus
           ATCC 51756]
 gi|254969823|gb|EET27326.1| Transcription termination protein NusB [Acidithiobacillus caldus
           ATCC 51756]
          Length = 147

 Score = 47.4 bits (111), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 37/137 (27%), Positives = 63/137 (45%), Gaps = 10/137 (7%)

Query: 18  IARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVM 77
           +AR A +QALYQ  +      EI  ++          L+ +   +  D  +F  I   + 
Sbjct: 1   MAREALLQALYQWQLNPAPCGEIARQF----------LEDDERLVGADQRFFEDIWGRLC 50

Query: 78  DRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDF 137
              + +D  I+S + ++     +  +  +ILR G  EL E    P  VII+E V ++  F
Sbjct: 51  PVMETLDQAIASVILDRRWQDEVSEVERAILRLGAFELREERQTPYRVIINEAVELSKAF 110

Query: 138 FYGDEPKFINAVLDKVS 154
                 +FIN VLD+++
Sbjct: 111 GAEQGHRFINGVLDRLA 127


>gi|332286886|ref|YP_004418797.1| transcription antitermination protein NusB [Pusillimonas sp. T7-7]
 gi|330430839|gb|AEC22173.1| transcription antitermination protein NusB [Pusillimonas sp. T7-7]
          Length = 166

 Score = 47.4 bits (111), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 33/106 (31%), Positives = 50/106 (47%), Gaps = 17/106 (16%)

Query: 64  VDLEWFRVIIHGVMDRKQHIDLLISSCLTEKW------SFSRLDMILCSILRAGVLELIE 117
            D  WF+ ++HGV+          +  L E++          L  I   IL  G  EL+ 
Sbjct: 64  ADATWFKTLLHGVLRE--------APALRERFMPHVDRPLEELSPIEHGILLIGSYELVH 115

Query: 118 CHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVS---RKEEIK 160
              VP +V I+E V +A  F   D  KF+N VLDK++   R +E++
Sbjct: 116 HIEVPYKVAINEAVELAKSFGGTDGFKFVNGVLDKMAADVRSQEVQ 161


>gi|223939373|ref|ZP_03631252.1| NusB antitermination factor [bacterium Ellin514]
 gi|223891977|gb|EEF58459.1| NusB antitermination factor [bacterium Ellin514]
          Length = 185

 Score = 47.4 bits (111), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 28/94 (29%), Positives = 46/94 (48%), Gaps = 3/94 (3%)

Query: 72  IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
           +I G ++ +   D  I     E W   R+  +  +ILR  + E++    +P  V I+E V
Sbjct: 93  LIRGALEHRDEADAQIKKY-AENWDLHRIAAVDRNILRLAIFEMLHREDIPPVVSINEAV 151

Query: 132 CIAHDFFYGDEPKFINAVLDKVSRKEEIKRSGCV 165
            IA  F   +  KF+N +LDK+  K E+ R   +
Sbjct: 152 DIAKKFSTYESGKFVNGILDKI--KGELMRPARI 183


>gi|296111669|ref|YP_003622051.1| transcription antitermination protein NusB [Leuconostoc kimchii
           IMSNU 11154]
 gi|295833201|gb|ADG41082.1| transcription antitermination protein NusB [Leuconostoc kimchii
           IMSNU 11154]
          Length = 138

 Score = 47.4 bits (111), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 26/84 (30%), Positives = 46/84 (54%), Gaps = 1/84 (1%)

Query: 67  EWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVI 126
           ++   +++G++  K  +D  I++ L + W+ +RL+     ILR  V EL+  + VP +V 
Sbjct: 44  DYLPRLVNGILGTKTELDEQIAAHLADGWAINRLNKADLIILRLAVYELLN-NLVPYKVA 102

Query: 127 ISEYVCIAHDFFYGDEPKFINAVL 150
           I E + +   F   D  KF+N VL
Sbjct: 103 IDEALILTKTFSDEDSRKFVNGVL 126


>gi|302670343|ref|YP_003830303.1| transcription antitermination factor NusB [Butyrivibrio
           proteoclasticus B316]
 gi|302394816|gb|ADL33721.1| transcription antitermination factor NusB [Butyrivibrio
           proteoclasticus B316]
          Length = 133

 Score = 47.4 bits (111), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 36/131 (27%), Positives = 63/131 (48%), Gaps = 9/131 (6%)

Query: 25  QALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHID 84
           Q L++++    S  E++ + E +     TE D+E  +   D ++ R     + D+ + ID
Sbjct: 12  QLLFRVEF--NSKEEMMEQEELFT----TEGDLE--FSKSDADYIRDKYEKIADKLEEID 63

Query: 85  LLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPK 144
             I+      W  SR+  +  +I+R  V E+    +VP  V I+E V +A  F     P 
Sbjct: 64  KAINEKAV-GWETSRMAKVDLTIIRLAVYEIKFDETVPTGVAINEAVELAKKFGQDGSPA 122

Query: 145 FINAVLDKVSR 155
           F+N VL K ++
Sbjct: 123 FVNGVLAKFAQ 133


>gi|254556506|ref|YP_003062923.1| transcription antitermination protein NusB [Lactobacillus plantarum
           JDM1]
 gi|308180449|ref|YP_003924577.1| transcription antitermination protein NusB [Lactobacillus plantarum
           subsp. plantarum ST-III]
 gi|254045433|gb|ACT62226.1| transcription antitermination protein NusB [Lactobacillus plantarum
           JDM1]
 gi|308045940|gb|ADN98483.1| transcription antitermination protein NusB [Lactobacillus plantarum
           subsp. plantarum ST-III]
          Length = 139

 Score = 47.4 bits (111), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 26/90 (28%), Positives = 43/90 (47%)

Query: 68  WFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVII 127
           +   ++ GV + +  +D  I   L++KWS  RL      ILR    EL     VP +V +
Sbjct: 48  YLSTLVTGVREHQAELDAQIQPYLSQKWSLDRLAKTDLIILRIAFFELQFVDDVPAKVAV 107

Query: 128 SEYVCIAHDFFYGDEPKFINAVLDKVSRKE 157
           +E + +   F      KF++ VL KV + +
Sbjct: 108 NEAIELTKAFSDDRSRKFVSGVLGKVVKNQ 137


>gi|322436555|ref|YP_004218767.1| NusB antitermination factor [Acidobacterium sp. MP5ACTX9]
 gi|321164282|gb|ADW69987.1| NusB antitermination factor [Acidobacterium sp. MP5ACTX9]
          Length = 140

 Score = 47.4 bits (111), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 36/140 (25%), Positives = 70/140 (50%), Gaps = 11/140 (7%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           R  +R   +Q L+Q D+ G  T E +++     + + T++D E+     DL  +R+    
Sbjct: 4   RRKSRELTMQMLFQGDL-GKQTPEQVTKL---FWSSVTDVDEETRGFAEDL--YRI---- 53

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
              R   ID LI    ++ W   R+ ++  ++LR+ + E++     P  ++I+E + +A 
Sbjct: 54  ATSRGTEIDALIEEH-SQNWRLERMPVVDRNLLRSAIAEMLGFPKTPHAIVINESLEVAR 112

Query: 136 DFFYGDEPKFINAVLDKVSR 155
            +   +   F+N VLD V+R
Sbjct: 113 RYAAPESIHFLNGVLDAVAR 132


>gi|256847385|ref|ZP_05552831.1| transcription antitermination factor NusB [Lactobacillus
           coleohominis 101-4-CHN]
 gi|256716049|gb|EEU31024.1| transcription antitermination factor NusB [Lactobacillus
           coleohominis 101-4-CHN]
          Length = 137

 Score = 47.4 bits (111), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 25/84 (29%), Positives = 43/84 (51%)

Query: 67  EWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVI 126
           ++   ++ GV + +  +D +IS+ LT  W+  RL      ILR  + EL     +P  ++
Sbjct: 45  QYLDELVSGVQEHQADLDAIISNYLTNNWTIDRLARPNLVILRIALYELQYEKELPAPIV 104

Query: 127 ISEYVCIAHDFFYGDEPKFINAVL 150
           I+E + +A  F      +FIN VL
Sbjct: 105 INEALELAKSFSDDKSRRFINGVL 128


>gi|296117827|ref|ZP_06836410.1| n utilization substance protein B-like protein [Corynebacterium
           ammoniagenes DSM 20306]
 gi|295969058|gb|EFG82300.1| n utilization substance protein B-like protein [Corynebacterium
           ammoniagenes DSM 20306]
          Length = 220

 Score = 47.0 bits (110), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 30/95 (31%), Positives = 48/95 (50%), Gaps = 3/95 (3%)

Query: 67  EWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELI-ECHSVPVEV 125
           E+ +V++ GV +    ID  I   L E W   R+  +  +I+R  V EL+     + +  
Sbjct: 34  EYTKVLVTGVAEELDTIDSTIERYLAEDWELYRIPAVDRAIMRVAVWELLYNSEEIDLAT 93

Query: 126 IISEYVCIAHDFFYGDEPKFINAVLDKV--SRKEE 158
            +SE V +A ++       +INAVLD V  SR E+
Sbjct: 94  AVSEGVELASEYSTDAAAPYINAVLDDVAHSRSED 128


>gi|317154514|ref|YP_004122562.1| transcription antitermination factor NusB [Desulfovibrio
           aespoeensis Aspo-2]
 gi|316944765|gb|ADU63816.1| transcription antitermination factor NusB [Desulfovibrio
           aespoeensis Aspo-2]
          Length = 151

 Score = 47.0 bits (110), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 42/156 (26%), Positives = 71/156 (45%), Gaps = 15/156 (9%)

Query: 3   IQDNKKDLKLSHRRGIARLAAVQALYQIDIIGC-STTEIISEYETYRFCADTELDVESVY 61
           +  NKK  +   RR + R  A Q LY        +  +I + +E      + E +     
Sbjct: 1   MSGNKKGNRPGIRR-VGRTLAFQVLYGTHFDDPKNPVDIGTAFERNPMVEEQESETAR-- 57

Query: 62  LHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSV 121
                E+ R ++ GV      ID  I    ++ W F R+ +I  SILR  + E++    +
Sbjct: 58  -----EFARALVLGVDKNLARIDAAIGEH-SQHWKFDRIAVIELSILRLSLYEML-FTDI 110

Query: 122 PVEVIISEYVCIAHDFFYGDEPK--FINAVLDKVSR 155
           PV+  I+E + ++    +GDE    F+N +LD V+R
Sbjct: 111 PVKAAINEAIELSK--LFGDEKSRGFVNGILDGVAR 144


>gi|296129685|ref|YP_003636935.1| NusB antitermination factor [Cellulomonas flavigena DSM 20109]
 gi|296021500|gb|ADG74736.1| NusB antitermination factor [Cellulomonas flavigena DSM 20109]
          Length = 138

 Score = 47.0 bits (110), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 21/82 (25%), Positives = 46/82 (56%), Gaps = 1/82 (1%)

Query: 72  IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
           ++ GV++  + ID L+++  +  W+ +R+  +  ++LR G  E++    VP  V + E V
Sbjct: 49  LVEGVLEHAERIDELLATH-SHGWTVARMPAVDRALLRLGAWEILWNDDVPDAVAVDEAV 107

Query: 132 CIAHDFFYGDEPKFINAVLDKV 153
            +A +    + P F+N +L ++
Sbjct: 108 SLARELSTDESPAFVNGLLGRL 129


>gi|111024096|ref|YP_707068.1| transcription antitermination protein NusB [Rhodococcus jostii
           RHA1]
 gi|119390812|sp|Q0S0M6|NUSB_RHOSR RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|110823626|gb|ABG98910.1| N utilization substance protein B [Rhodococcus jostii RHA1]
          Length = 169

 Score = 47.0 bits (110), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 26/82 (31%), Positives = 41/82 (50%), Gaps = 1/82 (1%)

Query: 72  IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
           ++ GV +    +D +I S L + W+  RL  +  +ILR  V EL     VP  V + E V
Sbjct: 59  VVTGVAENLDRLDEVIRSHL-QDWTLERLPAVDRAILRIAVWELFHATDVPPVVAVDEAV 117

Query: 132 CIAHDFFYGDEPKFINAVLDKV 153
            +A      + P F+N +L +V
Sbjct: 118 ELAKQLSTDESPGFVNGILGQV 139


>gi|326336653|ref|ZP_08202821.1| NusB family protein [Capnocytophaga sp. oral taxon 338 str. F0234]
 gi|325691123|gb|EGD33094.1| NusB family protein [Capnocytophaga sp. oral taxon 338 str. F0234]
          Length = 310

 Score = 47.0 bits (110), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 21/64 (32%), Positives = 38/64 (59%)

Query: 92  TEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLD 151
           T +W   R+  I   +++ G+ E ++  S+PV+V ++EYV IA ++       FIN +LD
Sbjct: 231 TPQWDTERIAEIDAILIKMGITEFLKFPSIPVKVTLNEYVEIAKEYSTPKSSVFINGILD 290

Query: 152 KVSR 155
            +S+
Sbjct: 291 TLSK 294


>gi|210633860|ref|ZP_03297875.1| hypothetical protein COLSTE_01792 [Collinsella stercoris DSM 13279]
 gi|210159029|gb|EEA90000.1| hypothetical protein COLSTE_01792 [Collinsella stercoris DSM 13279]
          Length = 216

 Score = 47.0 bits (110), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 38/153 (24%), Positives = 71/153 (46%), Gaps = 16/153 (10%)

Query: 10  LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF 69
           LK++  R +AR  A+Q L+Q ++ G S  ++++   T       +  ++           
Sbjct: 4   LKVNRGRTLARSQALQILFQAEVRGESVGDVLAGDFTLSKGPLADYAIQ----------- 52

Query: 70  RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELI--ECHSVPVEVII 127
             I  GV   ++ ID  + + ++  WS  R+     ++LRA V EL      ++   V+I
Sbjct: 53  --IARGVDANRERIDSALRA-VSANWSLERMPGADRNLLRAAVYELYFQVADTLDAAVVI 109

Query: 128 SEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIK 160
           +E V IA  +   D   F+N VL ++ R+  + 
Sbjct: 110 NEAVEIAKAYGTDDSAGFVNGVLGRIVRERHLP 142


>gi|227505027|ref|ZP_03935076.1| transcription antitermination protein NusB [Corynebacterium
           striatum ATCC 6940]
 gi|227198391|gb|EEI78439.1| transcription antitermination protein NusB [Corynebacterium
           striatum ATCC 6940]
          Length = 175

 Score = 47.0 bits (110), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 27/101 (26%), Positives = 48/101 (47%)

Query: 67  EWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVI 126
           E+ ++I+ G  +    ID  I   L+  W   R+  +  +I+R  V E++    VP    
Sbjct: 59  EYTQIIVKGAAEELDVIDETIERYLSADWELHRIPAVDRAIMRVAVWEILFNEDVPNATA 118

Query: 127 ISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRSGCVSA 167
           + E V +A ++     P +I+AVLD V + +       V+A
Sbjct: 119 LVEGVELASEYSNDQAPPYIHAVLDDVIQAQSADNPMSVAA 159


>gi|331084732|ref|ZP_08333820.1| transcription antitermination factor NusB [Lachnospiraceae
           bacterium 9_1_43BFAA]
 gi|330410826|gb|EGG90248.1| transcription antitermination factor NusB [Lachnospiraceae
           bacterium 9_1_43BFAA]
          Length = 134

 Score = 47.0 bits (110), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 28/87 (32%), Positives = 45/87 (51%), Gaps = 1/87 (1%)

Query: 67  EWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVI 126
           E+ R     + ++ + ID  I++ +T  W  SR+  +  +ILR  V E+     VP  V 
Sbjct: 45  EYIRTKYAAIAEKVEMIDEKINASVT-GWKTSRMGKVDLTILRLAVYEIEWDEEVPQGVA 103

Query: 127 ISEYVCIAHDFFYGDEPKFINAVLDKV 153
           I+E V +A  +   + P FIN VL K+
Sbjct: 104 INEAVELAKRYGGEESPSFINGVLGKI 130


>gi|331091280|ref|ZP_08340121.1| transcription antitermination factor NusB [Lachnospiraceae
           bacterium 2_1_46FAA]
 gi|330404727|gb|EGG84266.1| transcription antitermination factor NusB [Lachnospiraceae
           bacterium 2_1_46FAA]
          Length = 132

 Score = 47.0 bits (110), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 26/78 (33%), Positives = 44/78 (56%), Gaps = 1/78 (1%)

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
           V+++ + ID L+++  T  W  +R++ +  +ILR    EL     VPV V I+E V +A 
Sbjct: 54  VVEKVEEIDELLNANAT-GWKTARMNKVDLTILRLATYELKWDEDVPVGVAINEAVELAK 112

Query: 136 DFFYGDEPKFINAVLDKV 153
            +   + P F+N VL K+
Sbjct: 113 KYSSEEGPSFVNGVLGKL 130


>gi|189347470|ref|YP_001943999.1| NusB antitermination factor [Chlorobium limicola DSM 245]
 gi|238692182|sp|B3EFQ8|NUSB_CHLL2 RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|189341617|gb|ACD91020.1| NusB antitermination factor [Chlorobium limicola DSM 245]
          Length = 164

 Score = 47.0 bits (110), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 43/162 (26%), Positives = 75/162 (46%), Gaps = 31/162 (19%)

Query: 13  SHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVD------- 65
           ++RR I R   +QALY I++                   DT++D  + +L          
Sbjct: 3   TYRRQI-REKILQALYTIEL------------------RDTDIDSAAGWLLTQEILDDPN 43

Query: 66  -LEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVE 124
            +++F ++I  +      ID  I    T  W  SR+ +I  +ILR  + E++ C  +P +
Sbjct: 44  AMKFFNMLIGSIKAHMSEIDCYIERH-TFNWDMSRIAIIDKNILRMALAEILYCEDIPPK 102

Query: 125 VIISEYVCIAHDFFYGDE-PKFINAVLDKVSRKEEIKRSGCV 165
           V I+E + IA  F   ++  KF+N +LD +    E+K  G +
Sbjct: 103 VSINEAIEIAKKFSSTEKSSKFVNGILDAIF--NELKTDGKI 142


>gi|331082309|ref|ZP_08331435.1| transcription antitermination factor NusB [Lachnospiraceae
           bacterium 6_1_63FAA]
 gi|330400795|gb|EGG80396.1| transcription antitermination factor NusB [Lachnospiraceae
           bacterium 6_1_63FAA]
          Length = 135

 Score = 47.0 bits (110), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 25/77 (32%), Positives = 43/77 (55%), Gaps = 1/77 (1%)

Query: 81  QHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYG 140
           + ID+L++   +  W   R+  +  +ILR  V E+     VPV+V I+E V I+  F   
Sbjct: 59  EEIDVLLNEK-SAGWKTKRMSKVDLNILRLAVYEMKYDEDVPVKVAINEAVEISKSFGGD 117

Query: 141 DEPKFINAVLDKVSRKE 157
           D   F+N +L K++R++
Sbjct: 118 DSASFVNGILGKIARED 134


>gi|306834238|ref|ZP_07467357.1| transcription antitermination factor NusB [Streptococcus bovis ATCC
           700338]
 gi|304423587|gb|EFM26734.1| transcription antitermination factor NusB [Streptococcus bovis ATCC
           700338]
          Length = 142

 Score = 47.0 bits (110), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 37/144 (25%), Positives = 62/144 (43%), Gaps = 11/144 (7%)

Query: 11  KLSHRRGIARLAAVQALYQIDIIG--CSTTEIISEYETYRFCADTELDVESVYLHVDLEW 68
             ++ R   R  A QAL+ ++  G   +  +    Y+      D  +DV    L+     
Sbjct: 4   NFTNSRRDLRERAFQALFSLEFGGEYLAAAQFAYTYDK-TIEEDDTIDVPVFLLN----- 57

Query: 69  FRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIIS 128
              ++ GV D K  ID  I + L   WS  RL +   ++LR G+ E+      P  V ++
Sbjct: 58  ---LVKGVQDLKFEIDQQIETHLKSGWSLERLTLTDRALLRLGLYEIKYFEETPGRVAVN 114

Query: 129 EYVCIAHDFFYGDEPKFINAVLDK 152
           E + IA  +      KF+N +L +
Sbjct: 115 EIIEIAKKYSDDTSAKFVNGLLSQ 138


>gi|288817964|ref|YP_003432311.1| transcription antitermination factor [Hydrogenobacter thermophilus
           TK-6]
 gi|288787363|dbj|BAI69110.1| transcription antitermination factor [Hydrogenobacter thermophilus
           TK-6]
 gi|308751562|gb|ADO45045.1| NusB antitermination factor [Hydrogenobacter thermophilus TK-6]
          Length = 134

 Score = 47.0 bits (110), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 39/139 (28%), Positives = 62/139 (44%), Gaps = 13/139 (9%)

Query: 19  ARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMD 78
           AR  A   LYQ DI      +I  EY        +E             + R ++   M 
Sbjct: 7   ARKDAFLILYQWDIKADKLEDITEEYIKSNLIKHSERR----------RYIRKLVRTYMQ 56

Query: 79  RKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFF 138
           +   ID LIS  L+++W   R+  I  +ILR  + E++      ++ +I +YV +   + 
Sbjct: 57  KASEIDSLISE-LSQEWDIDRMGYIERNILRVALAEILFVGVKKLKPVIMDYVKLTLKYA 115

Query: 139 YGDEP-KFINAVLDKVSRK 156
            G EP KF+N VL + + K
Sbjct: 116 -GKEPAKFVNGVLGRAAPK 133


>gi|152991103|ref|YP_001356825.1| transcription antitermination protein NusB [Nitratiruptor sp.
           SB155-2]
 gi|166215704|sp|A6Q4Q9|NUSB_NITSB RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|151422964|dbj|BAF70468.1| transcription antitermination factor NusB [Nitratiruptor sp.
           SB155-2]
          Length = 139

 Score = 47.0 bits (110), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 30/90 (33%), Positives = 45/90 (50%), Gaps = 2/90 (2%)

Query: 67  EWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVI 126
           E+   +  G ++    ID +I   L E W   R+  I  +ILR GV EL      P  ++
Sbjct: 44  EFALALFKGTVEHLDTIDEMIKKHL-ESWDMERVGHIERAILRLGVYELFYTDLDPA-IV 101

Query: 127 ISEYVCIAHDFFYGDEPKFINAVLDKVSRK 156
           I+E V +A        PKFIN VLD ++++
Sbjct: 102 INEAVELAKKLGTDQSPKFINGVLDAIAKE 131


>gi|75764701|ref|ZP_00744117.1| N utilization substance protein B [Bacillus thuringiensis serovar
           israelensis ATCC 35646]
 gi|74487809|gb|EAO51609.1| N utilization substance protein B [Bacillus thuringiensis serovar
           israelensis ATCC 35646]
          Length = 107

 Score = 47.0 bits (110), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 36/115 (31%), Positives = 54/115 (46%), Gaps = 14/115 (12%)

Query: 15  RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74
           +R  AR  A+QALYQ+DI G        E E      +T  + E        E+   ++ 
Sbjct: 2   KRRTARERAMQALYQMDITG--------ELEPKVAVENTLDEGEETN-----EFLESLVV 48

Query: 75  GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISE 129
           G ++ K+ ID  I   L +KW   R+ ++  SILR  V E+     +P  V I+E
Sbjct: 49  GFVENKEAIDEAIRQNL-KKWKLERISIVDRSILRVAVYEMKYMEEIPHNVTINE 102


>gi|222151417|ref|YP_002560573.1| transcription termination factor [Macrococcus caseolyticus
           JCSC5402]
 gi|254772646|sp|B9E6Q9|NUSB_MACCJ RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|222120542|dbj|BAH17877.1| transcription termination factor [Macrococcus caseolyticus
           JCSC5402]
          Length = 130

 Score = 47.0 bits (110), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 28/82 (34%), Positives = 47/82 (57%), Gaps = 2/82 (2%)

Query: 72  IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
           ++HGV+ ++  +D  I+  L + W+  RL+ I   ILR    EL+   + P +VI++E V
Sbjct: 46  LVHGVISKQNELDDKITPHL-KSWALERLNKIDRIILRLSAFELLYTDA-PEKVIVNEAV 103

Query: 132 CIAHDFFYGDEPKFINAVLDKV 153
            +A  F   +  KFIN VL ++
Sbjct: 104 NLAKKFSDDESYKFINGVLSEI 125


>gi|325661675|ref|ZP_08150298.1| transcription antitermination factor NusB [Lachnospiraceae
           bacterium 4_1_37FAA]
 gi|325471928|gb|EGC75143.1| transcription antitermination factor NusB [Lachnospiraceae
           bacterium 4_1_37FAA]
          Length = 134

 Score = 47.0 bits (110), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 28/87 (32%), Positives = 45/87 (51%), Gaps = 1/87 (1%)

Query: 67  EWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVI 126
           E+ R     + ++ + ID  I++ +T  W  SR+  +  +ILR  V E+     VP  V 
Sbjct: 45  EYIRTKYAAIAEKVEMIDEKINASVT-GWKTSRMGKVDLTILRLAVYEIEWDEEVPQGVA 103

Query: 127 ISEYVCIAHDFFYGDEPKFINAVLDKV 153
           I+E V +A  +   + P FIN VL K+
Sbjct: 104 INEAVELAKRYGGEESPSFINGVLGKI 130


>gi|256425201|ref|YP_003125854.1| NusB antitermination factor [Chitinophaga pinensis DSM 2588]
 gi|256040109|gb|ACU63653.1| NusB antitermination factor [Chitinophaga pinensis DSM 2588]
          Length = 309

 Score = 47.0 bits (110), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 24/88 (27%), Positives = 48/88 (54%), Gaps = 1/88 (1%)

Query: 66  LEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEV 125
           LE+ R ++  V+D+K++   LI   L + W   R+  +   ++  GV E +   ++P +V
Sbjct: 205 LEYARELLLTVLDKKEYCLELIKPKL-QNWDPERIAAVDMLLMEMGVCEFLYFPTIPTKV 263

Query: 126 IISEYVCIAHDFFYGDEPKFINAVLDKV 153
            I+EY+ +A  +      +F+N +LD +
Sbjct: 264 TINEYIDLAKAYSTPQSGQFVNGILDNI 291


>gi|242373824|ref|ZP_04819398.1| transcription antitermination protein NusB [Staphylococcus
           epidermidis M23864:W1]
 gi|242348378|gb|EES39980.1| transcription antitermination protein NusB [Staphylococcus
           epidermidis M23864:W1]
          Length = 128

 Score = 47.0 bits (110), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 40/139 (28%), Positives = 63/139 (45%), Gaps = 13/139 (9%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           R  +R+ A Q L+Q+++     T      E   F  D   +++  ++H    W   ++ G
Sbjct: 3   RKESRIQAFQTLFQLEMKDTDLTIT----EAINFIKDDHPELDFDFIH----W---LVTG 51

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
           V D +  +D  I   L + WS  RL      ILR    E++     P +VII+E V +  
Sbjct: 52  VKDHESVLDEKIKPHLKD-WSIERLLKSDRIILRMATFEMLHS-DTPEKVIINEAVELTK 109

Query: 136 DFFYGDEPKFINAVLDKVS 154
            F   D  KFIN VL  ++
Sbjct: 110 QFSDDDHYKFINGVLSNIN 128


>gi|116670816|ref|YP_831749.1| NusB antitermination factor [Arthrobacter sp. FB24]
 gi|166215661|sp|A0JX79|NUSB_ARTS2 RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|116610925|gb|ABK03649.1| NusB antitermination factor [Arthrobacter sp. FB24]
          Length = 136

 Score = 47.0 bits (110), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 25/84 (29%), Positives = 43/84 (51%), Gaps = 1/84 (1%)

Query: 72  IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
           I+ GV+  +  ID  + +  ++ W+  R+  +   ILR G  EL+    VP  V +SE V
Sbjct: 47  IVEGVVSHQAAIDEFLETY-SQGWTLERMPSVDRIILRIGTWELLYNDDVPDGVAVSEAV 105

Query: 132 CIAHDFFYGDEPKFINAVLDKVSR 155
            +A      + P FIN +L ++ +
Sbjct: 106 ALAKTLSTDESPSFINGLLGRLQQ 129


>gi|260222860|emb|CBA32850.1| N utilization substance protein B homolog [Curvibacter putative
           symbiont of Hydra magnipapillata]
          Length = 177

 Score = 47.0 bits (110), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 37/139 (26%), Positives = 67/139 (48%), Gaps = 13/139 (9%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           R  AR  A+Q LYQ  ++G +  + I  + T      ++ D     +H D      ++HG
Sbjct: 35  RTRAREFALQGLYQ-SLVGRNAVDDIDPF-TRDLAGFSKADA----VHFD-----ALLHG 83

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
            +   + +D LI+  L      S +  I  +I+  G  E+  C  VP  V+++E + +A 
Sbjct: 84  CVAEAEALDALITPALDR--PMSEISPIEHAIMWIGAYEMKHCLDVPWRVVLNECIELAK 141

Query: 136 DFFYGDEPKFINAVLDKVS 154
           +F   D  K++N VL+ ++
Sbjct: 142 EFGGTDGHKYVNGVLNGIA 160


>gi|169794295|ref|YP_001712088.1| transcription antitermination protein NusB [Acinetobacter baumannii
           AYE]
 gi|184159907|ref|YP_001848246.1| transcription antitermination protein NusB [Acinetobacter baumannii
           ACICU]
 gi|213159130|ref|YP_002321128.1| transcription antitermination factor NusB [Acinetobacter baumannii
           AB0057]
 gi|215481852|ref|YP_002324034.1| transcription antitermination factor NusB [Acinetobacter baumannii
           AB307-0294]
 gi|239502815|ref|ZP_04662125.1| transcription antitermination protein NusB [Acinetobacter baumannii
           AB900]
 gi|260557847|ref|ZP_05830060.1| transcription antitermination factor NusB [Acinetobacter baumannii
           ATCC 19606]
 gi|332850100|ref|ZP_08432487.1| transcription antitermination factor NusB [Acinetobacter baumannii
           6013150]
 gi|332871452|ref|ZP_08439969.1| transcription antitermination factor NusB [Acinetobacter baumannii
           6013113]
 gi|332873342|ref|ZP_08441296.1| transcription antitermination factor NusB [Acinetobacter baumannii
           6014059]
 gi|226737436|sp|B7GUW2|NUSB_ACIB3 RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|226737437|sp|B7I252|NUSB_ACIB5 RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|238685542|sp|A3MA35|NUSB_ACIBT RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|238688080|sp|B0V9X4|NUSB_ACIBY RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|238691018|sp|B2I2B2|NUSB_ACIBC RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|169147222|emb|CAM85081.1| transcription termination, L factor (N utilization substance
           protein B) [Acinetobacter baumannii AYE]
 gi|183211501|gb|ACC58899.1| Transcription termination factor [Acinetobacter baumannii ACICU]
 gi|193078716|gb|ABO13779.2| transcription termination L factor [Acinetobacter baumannii ATCC
           17978]
 gi|213058290|gb|ACJ43192.1| transcription antitermination factor NusB [Acinetobacter baumannii
           AB0057]
 gi|213988308|gb|ACJ58607.1| transcription antitermination factor NusB [Acinetobacter baumannii
           AB307-0294]
 gi|260408638|gb|EEX01943.1| transcription antitermination factor NusB [Acinetobacter baumannii
           ATCC 19606]
 gi|322509823|gb|ADX05277.1| nusB [Acinetobacter baumannii 1656-2]
 gi|323519833|gb|ADX94214.1| transcription antitermination protein NusB [Acinetobacter baumannii
           TCDC-AB0715]
 gi|332730949|gb|EGJ62255.1| transcription antitermination factor NusB [Acinetobacter baumannii
           6013150]
 gi|332731489|gb|EGJ62779.1| transcription antitermination factor NusB [Acinetobacter baumannii
           6013113]
 gi|332738405|gb|EGJ69278.1| transcription antitermination factor NusB [Acinetobacter baumannii
           6014059]
          Length = 149

 Score = 47.0 bits (110), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 28/98 (28%), Positives = 50/98 (51%), Gaps = 2/98 (2%)

Query: 57  VESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELI 116
            E+    VDL ++  ++  V+ + + +D L+   L  +     LD +  + LR G  EL 
Sbjct: 42  AENAMHKVDLNYYHELLTQVIAQHEDLDALLIPVLDRE--IDALDGVELATLRLGAYELR 99

Query: 117 ECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVS 154
           +   +P  V++ E + +A  F   D  K+IN VLD++S
Sbjct: 100 DHLEIPYRVVLDEAIELAKHFGGADSHKYINGVLDRLS 137


>gi|229825477|ref|ZP_04451546.1| hypothetical protein GCWU000182_00837 [Abiotrophia defectiva ATCC
           49176]
 gi|229790040|gb|EEP26154.1| hypothetical protein GCWU000182_00837 [Abiotrophia defectiva ATCC
           49176]
          Length = 138

 Score = 46.6 bits (109), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 38/124 (30%), Positives = 61/124 (49%), Gaps = 12/124 (9%)

Query: 38  TEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSF 97
            E   ++E+Y   ++ + D E +       W RV+   + ++K  +D LI    ++KW  
Sbjct: 23  AEWKEQFESYADYSEIKEDREGL-------WQRVM--ALEEKKAEVDSLIDGA-SKKWRI 72

Query: 98  SRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDE-PKFINAVLDKVSRK 156
           SRL      +LR  V E+     +P +V ++E V +A   + GDE P F+N VL K    
Sbjct: 73  SRLSKTDLMLLRVAVYEIKFDSEIPDKVSVNEAVELAK-IYGGDESPAFVNGVLAKFMSG 131

Query: 157 EEIK 160
           EE K
Sbjct: 132 EEAK 135


>gi|303228540|ref|ZP_07315368.1| ribosomal RNA small subunit methyltransferase B [Veillonella
           atypica ACS-134-V-Col7a]
 gi|302516787|gb|EFL58701.1| ribosomal RNA small subunit methyltransferase B [Veillonella
           atypica ACS-134-V-Col7a]
          Length = 452

 Score = 46.6 bits (109), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 36/139 (25%), Positives = 66/139 (47%), Gaps = 14/139 (10%)

Query: 20  RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79
           RL AV+AL  I+  G     ++ +Y      +D           +D  +F  +++GV+ R
Sbjct: 14  RLLAVKALSDINRKGAYANIVLQDYILKYNLSD-----------LDRRFFTELVYGVVRR 62

Query: 80  KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139
           + ++D++I           +L  ++  ILR GV ++I    VP    ++E V +A     
Sbjct: 63  RNYLDVIIVHFANR--PIKKLSSMVVEILRLGVYQIIYMDKVPESAAVNESVKLAKKLTR 120

Query: 140 GDEPKFINAVLDKVSRKEE 158
           G    F+NA+L  V R+++
Sbjct: 121 GLS-GFVNAILRSVIREQD 138


>gi|22096363|sp|P74395|NUSB_SYNY3 RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
          Length = 221

 Score = 46.6 bits (109), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 31/86 (36%), Positives = 46/86 (53%), Gaps = 2/86 (2%)

Query: 72  IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
           +I  V  R+Q ID  +   + + W  SRL  I   ILR  + EL +   VP +V I+E V
Sbjct: 126 LIGTVCRRRQQIDEQLQEAMVD-WQLSRLAKIDQDILRLAIAEL-DYLGVPQKVAINEAV 183

Query: 132 CIAHDFFYGDEPKFINAVLDKVSRKE 157
            +A  +   D  +FIN VL +V+ K+
Sbjct: 184 ELAKRYSGQDGHRFINGVLRRVTEKK 209


>gi|288799718|ref|ZP_06405177.1| NusB family protein [Prevotella sp. oral taxon 299 str. F0039]
 gi|288332966|gb|EFC71445.1| NusB family protein [Prevotella sp. oral taxon 299 str. F0039]
          Length = 322

 Score = 46.6 bits (109), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 22/67 (32%), Positives = 37/67 (55%)

Query: 89  SCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINA 148
           S  +  W FSRL  +   I++  + E++   S+PV V I+EYV +A  +       +IN 
Sbjct: 230 SETSRNWDFSRLAYMDVVIMQIAIAEMLTFPSIPVSVTINEYVNLAKLYSTSRSGGYING 289

Query: 149 VLDKVSR 155
           +LD ++R
Sbjct: 290 MLDAIAR 296


>gi|254797209|ref|YP_003082050.1| putative N utilization substance protein B [Neorickettsia risticii
           str. Illinois]
 gi|254590448|gb|ACT69810.1| putative N utilization substance protein B [Neorickettsia risticii
           str. Illinois]
          Length = 141

 Score = 46.6 bits (109), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 24/69 (34%), Positives = 39/69 (56%)

Query: 86  LISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKF 145
           LI   L+E+W   R+D +  S+LR  + EL   +     ++I+EYV +   F    E  F
Sbjct: 67  LIGRFLSEEWEIDRMDNLKLSLLRVAISELRLSNIAQKNLVINEYVSLGRLFLPVKEVGF 126

Query: 146 INAVLDKVS 154
           INA+L+K++
Sbjct: 127 INAILEKLT 135


>gi|114566114|ref|YP_753268.1| hypothetical protein Swol_0564 [Syntrophomonas wolfei subsp. wolfei
           str. Goettingen]
 gi|119390841|sp|Q0AZF7|NUSB_SYNWW RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|114337049|gb|ABI67897.1| NusB antitermination factor [Syntrophomonas wolfei subsp. wolfei
           str. Goettingen]
          Length = 134

 Score = 46.6 bits (109), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 27/84 (32%), Positives = 45/84 (53%), Gaps = 5/84 (5%)

Query: 72  IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
           +I G ++++  ID +I+S   E W+  R+  +  +I+R    E++        V I E +
Sbjct: 48  LIQGTLEKQAEIDQMIASYSRE-WALDRMSSVDRNIMRVAAYEILYLEDSQAVVAIDEAI 106

Query: 132 CIAHDFFYGDEPK--FINAVLDKV 153
            IA    YGDE    F+NA+LDK+
Sbjct: 107 EIAKK--YGDEGSGSFVNAILDKI 128


>gi|34497846|ref|NP_902061.1| transcription antitermination protein NusB [Chromobacterium
           violaceum ATCC 12472]
 gi|39931749|sp|Q7NVF2|NUSB_CHRVO RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|34103702|gb|AAQ60063.1| N utilization substance protein B [Chromobacterium violaceum ATCC
           12472]
          Length = 149

 Score = 46.6 bits (109), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 41/149 (27%), Positives = 69/149 (46%), Gaps = 22/149 (14%)

Query: 10  LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF 69
           +K + RR  AR  AVQ +Y+ ++       +I ++          L     +   D   F
Sbjct: 1   MKTARRR--AREFAVQGIYEWELNPDRPASLIEKH----------LRENEYFAKADEALF 48

Query: 70  RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRA----GVLELIECHSVPVEV 125
           R I++GV+   + ++LL  S    ++ + R +  +  + RA      LEL +    P  V
Sbjct: 49  RSILYGVL---KDVELL--SAQVGRY-YERAEDEVSPVERAVLLMAALELTQSPETPYPV 102

Query: 126 IISEYVCIAHDFFYGDEPKFINAVLDKVS 154
           II+E + I   F   D  KF+N VLDK++
Sbjct: 103 IINEAIEITKTFGGTDGHKFVNGVLDKLA 131


>gi|288906084|ref|YP_003431306.1| antitermination protein NusB [Streptococcus gallolyticus UCN34]
 gi|306832123|ref|ZP_07465277.1| transcription antitermination factor NusB [Streptococcus
           gallolyticus subsp. gallolyticus TX20005]
 gi|325979049|ref|YP_004288765.1| transcription antitermination factor NusB [Streptococcus
           gallolyticus subsp. gallolyticus ATCC BAA-2069]
 gi|288732810|emb|CBI14386.1| putative antitermination protein NusB [Streptococcus gallolyticus
           UCN34]
 gi|304425562|gb|EFM28680.1| transcription antitermination factor NusB [Streptococcus
           gallolyticus subsp. gallolyticus TX20005]
 gi|325178977|emb|CBZ49021.1| transcription antitermination factor NusB [Streptococcus
           gallolyticus subsp. gallolyticus ATCC BAA-2069]
          Length = 142

 Score = 46.6 bits (109), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 36/144 (25%), Positives = 62/144 (43%), Gaps = 11/144 (7%)

Query: 11  KLSHRRGIARLAAVQALYQIDIIG--CSTTEIISEYETYRFCADTELDVESVYLHVDLEW 68
             ++ R   R  A QAL+ ++  G   +  +    Y+      D  +DV    L+     
Sbjct: 4   NFTNSRRDLRERAFQALFSLEFGGEYLAAAQFAYTYDK-TIEEDDTIDVPVFLLN----- 57

Query: 69  FRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIIS 128
              ++ GV D +  ID  I + L   WS  RL +   ++LR G+ E+      P  V ++
Sbjct: 58  ---LVKGVQDFQSEIDQQIETHLKSGWSLERLTLTDRTLLRLGLYEIKYFEETPGRVAVN 114

Query: 129 EYVCIAHDFFYGDEPKFINAVLDK 152
           E + IA  +      KF+N +L +
Sbjct: 115 EIIEIAKKYSDDTSAKFVNGLLSQ 138


>gi|149279327|ref|ZP_01885458.1| putative N utilization substance protein [Pedobacter sp. BAL39]
 gi|149229853|gb|EDM35241.1| putative N utilization substance protein [Pedobacter sp. BAL39]
          Length = 297

 Score = 46.6 bits (109), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 22/77 (28%), Positives = 44/77 (57%), Gaps = 2/77 (2%)

Query: 92  TEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLD 151
           T+ W   R+ ++   +++  + EL+   S+PV+V I+EY+ ++ D+       FIN +LD
Sbjct: 216 TKNWESERIALMDTILMKMAICELMNFPSIPVKVTINEYLDLSKDYSTPKSNSFINGILD 275

Query: 152 KVSRKEEIKRSGCVSAI 168
           K+    ++KR+  +  I
Sbjct: 276 KILG--DLKRTDSIHKI 290


>gi|228473251|ref|ZP_04058006.1| NusB family protein [Capnocytophaga gingivalis ATCC 33624]
 gi|228275401|gb|EEK14193.1| NusB family protein [Capnocytophaga gingivalis ATCC 33624]
          Length = 310

 Score = 46.6 bits (109), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 22/77 (28%), Positives = 44/77 (57%), Gaps = 2/77 (2%)

Query: 92  TEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLD 151
           T KW   R+  +   +++ G+ E ++  S+PV+V ++EYV IA ++       F+N +LD
Sbjct: 231 TPKWDADRIAELDAIMIKMGIAEFLKFPSIPVKVTLNEYVEIAKEYSTPKSSVFVNGILD 290

Query: 152 KVSRKEEIKRSGCVSAI 168
            +S+  + ++ G +  I
Sbjct: 291 TLSK--DFQQEGKLKKI 305


>gi|119962399|ref|YP_948012.1| transcription antitermination factor NusB [Arthrobacter aurescens
           TC1]
 gi|166215660|sp|A1R700|NUSB_ARTAT RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|119949258|gb|ABM08169.1| transcription antitermination factor NusB [Arthrobacter aurescens
           TC1]
          Length = 136

 Score = 46.6 bits (109), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 25/84 (29%), Positives = 42/84 (50%), Gaps = 1/84 (1%)

Query: 72  IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
           I+ GV+  +  ID  + +   + W+  R+  +   ILR G  EL+    VP  V +SE V
Sbjct: 47  IVEGVVSMQATIDEFLQTY-AQGWTLERMPSVDRIILRIGAWELLYNDEVPDGVAVSEAV 105

Query: 132 CIAHDFFYGDEPKFINAVLDKVSR 155
            +A      + P FIN +L ++ +
Sbjct: 106 ALAKTMSTDESPAFINGLLGRLQK 129


>gi|325107333|ref|YP_004268401.1| NusB antitermination factor [Planctomyces brasiliensis DSM 5305]
 gi|324967601|gb|ADY58379.1| NusB antitermination factor [Planctomyces brasiliensis DSM 5305]
          Length = 137

 Score = 46.6 bits (109), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 25/84 (29%), Positives = 45/84 (53%), Gaps = 2/84 (2%)

Query: 71  VIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEY 130
            +  G M+ ++ ID  IS  + + W+  R+ +   ++LR G  EL + H  P  V+I E 
Sbjct: 48  TLFAGTMEHRETIDDRISK-VAKNWTLKRMAVTDRNLLRLGCFEL-DYHDTPHTVVIDEI 105

Query: 131 VCIAHDFFYGDEPKFINAVLDKVS 154
           + +A  F   +   F+N +LDK++
Sbjct: 106 IELAKKFGAENSSSFVNGILDKLA 129


>gi|169634846|ref|YP_001708582.1| transcription antitermination protein NusB [Acinetobacter baumannii
           SDF]
 gi|238688150|sp|B0VPT9|NUSB_ACIBS RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|169153638|emb|CAP02830.1| transcription termination, L factor (N utilization substance
           protein B) [Acinetobacter baumannii]
          Length = 149

 Score = 46.6 bits (109), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 28/98 (28%), Positives = 50/98 (51%), Gaps = 2/98 (2%)

Query: 57  VESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELI 116
            E+    VDL ++  ++  V+ + + +D L+   L  +     LD +  + LR G  EL 
Sbjct: 42  AENAMHKVDLNYYHELLTQVIAQHEDLDALLIPVLDRE--IDALDGVELATLRLGAYELR 99

Query: 117 ECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVS 154
           +   +P  V++ E + +A  F   D  K+IN VLD++S
Sbjct: 100 DHLEIPYRVVLDEAIELAKHFGGADSHKYINGVLDRLS 137


>gi|126643397|ref|YP_001086381.1| transcription antitermination protein NusB [Acinetobacter baumannii
           ATCC 17978]
          Length = 122

 Score = 46.6 bits (109), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 28/98 (28%), Positives = 50/98 (51%), Gaps = 2/98 (2%)

Query: 57  VESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELI 116
            E+    VDL ++  ++  V+ + + +D L+   L  +     LD +  + LR G  EL 
Sbjct: 15  AENAMHKVDLNYYHELLTQVIAQHEDLDALLIPVLDRE--IDALDGVELATLRLGAYELR 72

Query: 117 ECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVS 154
           +   +P  V++ E + +A  F   D  K+IN VLD++S
Sbjct: 73  DHLEIPYRVVLDEAIELAKHFGGADSHKYINGVLDRLS 110


>gi|294786532|ref|ZP_06751786.1| transcription antitermination factor NusB [Parascardovia
           denticolens F0305]
 gi|315226110|ref|ZP_07867898.1| transcription antitermination factor NusB [Parascardovia
           denticolens DSM 10105]
 gi|294485365|gb|EFG32999.1| transcription antitermination factor NusB [Parascardovia
           denticolens F0305]
 gi|315120242|gb|EFT83374.1| transcription antitermination factor NusB [Parascardovia
           denticolens DSM 10105]
          Length = 209

 Score = 46.6 bits (109), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 35/147 (23%), Positives = 64/147 (43%), Gaps = 12/147 (8%)

Query: 12  LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71
           ++  R  AR  A+  LY+ D  G    +++ E   Y   A T L            + + 
Sbjct: 1   MARARTTARKRALNTLYEADEKGEEIVDLLDERLAY-PGAQTPLPP----------YAQE 49

Query: 72  IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
           I+ GV   ++ +D  +    +E W   R+ ++  +I R    E+I    VP +V I E +
Sbjct: 50  IVRGVASHRRTVDKALEEH-SEGWDVKRMHVLDRNIARMAAWEIIYNDDVPAKVAIDEAL 108

Query: 132 CIAHDFFYGDEPKFINAVLDKVSRKEE 158
            +A  +   + P F++ +L  + R  E
Sbjct: 109 TLAKAYSDDEAPHFLHGLLSAIERDAE 135


>gi|297621030|ref|YP_003709167.1| nusB putative transcription antitermination factor, NusB family
           [Waddlia chondrophila WSU 86-1044]
 gi|297376331|gb|ADI38161.1| nusB putative transcription antitermination factor, NusB family
           [Waddlia chondrophila WSU 86-1044]
          Length = 145

 Score = 46.6 bits (109), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 23/81 (28%), Positives = 46/81 (56%), Gaps = 1/81 (1%)

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
           +  R++ +D LI     + ++F R+  +  +ILR G+ EL+    +P +V I+E + +  
Sbjct: 57  IRGREKELDQLIGES-AKSYAFDRIPRVERNILRLGIYELLFDEQIPPKVAIAEAIRLGR 115

Query: 136 DFFYGDEPKFINAVLDKVSRK 156
            F   +   FINA++D++ +K
Sbjct: 116 KFSTPESATFINAIMDELYQK 136


>gi|78776604|ref|YP_392919.1| transcription antitermination protein NusB [Sulfurimonas
           denitrificans DSM 1251]
 gi|119390845|sp|Q30TJ7|NUSB_SULDN RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|78497144|gb|ABB43684.1| NusB antitermination factor [Sulfurimonas denitrificans DSM 1251]
          Length = 132

 Score = 46.6 bits (109), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 44/144 (30%), Positives = 59/144 (40%), Gaps = 21/144 (14%)

Query: 16  RGIARLAAVQALYQIDI----IGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71
           R  AR+A V  LY  D+    I   T EI+ E +      D  L                
Sbjct: 4   RHQARMAVVSLLYAFDLGNGNIAEHTDEILEEKKIRNKQKDFAL---------------T 48

Query: 72  IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
           +  GVM     +D  I   L + W F RL  I  + LR    E++    +   V+I+E V
Sbjct: 49  LYEGVMANITPVDEAIVKHLKD-WDFERLGAIERATLRLATYEIL-FGELDSAVVINEAV 106

Query: 132 CIAHDFFYGDEPKFINAVLDKVSR 155
            I   F     PKFIN VLD +S+
Sbjct: 107 EITKAFGTEQSPKFINGVLDAISK 130


>gi|229552487|ref|ZP_04441212.1| transcription antitermination protein NusB [Lactobacillus rhamnosus
           LMS2-1]
 gi|229314039|gb|EEN80012.1| transcription antitermination protein NusB [Lactobacillus rhamnosus
           LMS2-1]
          Length = 139

 Score = 46.6 bits (109), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 28/105 (26%), Positives = 50/105 (47%), Gaps = 6/105 (5%)

Query: 52  DTELDVESVYLHV---DLE---WFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILC 105
           + E D  +VY  V   D E   +   ++ GV+  +  +D  ++  L + W+ SRL     
Sbjct: 25  NPEADKNAVYAEVLPKDTEVPSYLTALVEGVLANQAALDAALTPQLKKGWTLSRLTKPDL 84

Query: 106 SILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVL 150
            ILR G+ E+    ++P    I+E + +A  +      KF+N +L
Sbjct: 85  IILRLGLYEIRYEEAMPEAAAINEAINLAKRYSDEQSAKFVNGIL 129


>gi|30410822|ref|NP_660779.2| transcription antitermination protein NusB [Buchnera aphidicola
           str. Sg (Schizaphis graminum)]
          Length = 142

 Score = 46.6 bits (109), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 47/152 (30%), Positives = 71/152 (46%), Gaps = 16/152 (10%)

Query: 10  LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF 69
           +K + RR  AR  A+Q LY  +I   +  +           +  E   E    ++D+ +F
Sbjct: 7   IKPNFRRK-ARACALQMLYSWEISQNNIKD-----------SAIEFLKEKNKKNIDIIYF 54

Query: 70  RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISE 129
             +I G+    + ID L+   L+   S   L  I  +ILR    EL +   +P +V I+E
Sbjct: 55  YELIIGITYNCRSIDDLMKPYLSR--SLKELGQIEKAILRISFYELYKRKDIPYKVSINE 112

Query: 130 YVCIAHDFFYGDEPKFINAVLDKVSRKEEIKR 161
            + +A  F   D  KFIN VLDK + K  IKR
Sbjct: 113 GIELAKLFGSEDSHKFINGVLDKAALK--IKR 142


>gi|25008871|sp|Q8K9A2|NUSB_BUCAP RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|21623355|gb|AAM67990.1| N utilization substance protein B [Buchnera aphidicola str. Sg
           (Schizaphis graminum)]
          Length = 138

 Score = 46.6 bits (109), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 47/152 (30%), Positives = 71/152 (46%), Gaps = 16/152 (10%)

Query: 10  LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF 69
           +K + RR  AR  A+Q LY  +I   +  +           +  E   E    ++D+ +F
Sbjct: 3   IKPNFRRK-ARACALQMLYSWEISQNNIKD-----------SAIEFLKEKNKKNIDIIYF 50

Query: 70  RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISE 129
             +I G+    + ID L+   L+   S   L  I  +ILR    EL +   +P +V I+E
Sbjct: 51  YELIIGITYNCRSIDDLMKPYLSR--SLKELGQIEKAILRISFYELYKRKDIPYKVSINE 108

Query: 130 YVCIAHDFFYGDEPKFINAVLDKVSRKEEIKR 161
            + +A  F   D  KFIN VLDK + K  IKR
Sbjct: 109 GIELAKLFGSEDSHKFINGVLDKAALK--IKR 138


>gi|206890845|ref|YP_002249638.1| transcription antitermination factor NusB [Thermodesulfovibrio
           yellowstonii DSM 11347]
 gi|226738908|sp|B5YHQ2|NUSB_THEYD RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|206742783|gb|ACI21840.1| transcription antitermination factor NusB [Thermodesulfovibrio
           yellowstonii DSM 11347]
          Length = 151

 Score = 46.6 bits (109), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 21/66 (31%), Positives = 39/66 (59%)

Query: 92  TEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLD 151
            +KW+  R+  I  +ILR  + E++    +P +V I+E V IA  +   +   FIN +LD
Sbjct: 77  ADKWNIERMITIDKNILRFSIYEILYRQDIPYQVTINEAVEIAKKYSTKESAAFINGILD 136

Query: 152 KVSRKE 157
           +++++E
Sbjct: 137 RIAKEE 142


>gi|330466963|ref|YP_004404706.1| nusb antitermination factor [Verrucosispora maris AB-18-032]
 gi|328809934|gb|AEB44106.1| nusb antitermination factor [Verrucosispora maris AB-18-032]
          Length = 144

 Score = 46.6 bits (109), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 26/83 (31%), Positives = 43/83 (51%), Gaps = 1/83 (1%)

Query: 72  IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
           ++ GV      ID LISS   E W+  R+ ++  ++ R  V EL+    +   V ISE V
Sbjct: 58  LVEGVAGHLDRIDELISSY-AEGWTLDRMPVVDRNLARIAVYELLYVDEIDDAVAISEAV 116

Query: 132 CIAHDFFYGDEPKFINAVLDKVS 154
            +A      D P+F+N +L +++
Sbjct: 117 ELARQMSTDDSPRFLNGLLGRIA 139


>gi|303327268|ref|ZP_07357710.1| transcription antitermination factor NusB [Desulfovibrio sp.
           3_1_syn3]
 gi|302863256|gb|EFL86188.1| transcription antitermination factor NusB [Desulfovibrio sp.
           3_1_syn3]
          Length = 163

 Score = 46.6 bits (109), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 40/154 (25%), Positives = 66/154 (42%), Gaps = 16/154 (10%)

Query: 11  KLSHRRGIARLAAVQALYQIDIIGCSTTE------IISEYETYRFCADTELDVESVYLHV 64
           K + RRG AR  A Q LY +      +        ++S + T    A  E D+ S     
Sbjct: 5   KNTTRRG-ARELAFQVLYGLSFTPAESRADLRRAFVLSPHNT----AMDEQDLGSEPTGF 59

Query: 65  DLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVE 124
             E    ++ GV      +D  IS   +  W   R+  I  ++LR  V E++    VP +
Sbjct: 60  AWE----LVEGVWGNSAALDTAISR-FSHNWRVDRMGRIELTLLRLAVFEMLYRQDVPPK 114

Query: 125 VIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEE 158
           V I+E + ++  F   +   F+N +LD  ++  E
Sbjct: 115 VAINEALELSGQFGEDNAKNFVNGILDAAAKALE 148


>gi|269795098|ref|YP_003314553.1| NusB antitermination factor [Sanguibacter keddieii DSM 10542]
 gi|269097283|gb|ACZ21719.1| NusB antitermination factor [Sanguibacter keddieii DSM 10542]
          Length = 138

 Score = 46.6 bits (109), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 24/82 (29%), Positives = 44/82 (53%), Gaps = 1/82 (1%)

Query: 72  IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
           I+ GV+++   ID L+ +  + +WS  R+  +  ++LR G  E++    VP  V I E V
Sbjct: 49  IVEGVLEQLDRIDELLETY-SHEWSLDRMPAVDRALLRIGTWEILFNDEVPDAVAIDEAV 107

Query: 132 CIAHDFFYGDEPKFINAVLDKV 153
            ++      D P F+N +L ++
Sbjct: 108 ELSRSLSTDDSPVFVNGLLGRI 129


>gi|289663670|ref|ZP_06485251.1| transcription antitermination protein NusB [Xanthomonas campestris
           pv. vasculorum NCPPB702]
 gi|289671050|ref|ZP_06492125.1| transcription antitermination protein NusB [Xanthomonas campestris
           pv. musacearum NCPPB4381]
          Length = 156

 Score = 46.6 bits (109), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 31/130 (23%), Positives = 56/130 (43%), Gaps = 13/130 (10%)

Query: 25  QALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHID 84
           QA+Y   I G    ++I ++             E  +   DL +F  ++ GV+  +  +D
Sbjct: 30  QAVYAWQISGGFAKQVIGQFAH-----------EQAHEVADLAYFENLVEGVLSNRAELD 78

Query: 85  LLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPK 144
             ++  L        +D I  ++LR    EL+    VP  V+I+E +  A  F       
Sbjct: 79  TALTPYLDR--GVEEVDAIERAVLRLAAYELLYRQDVPYRVVINEAIETAKRFGSEHGHT 136

Query: 145 FINAVLDKVS 154
           ++N VLD+ +
Sbjct: 137 YVNGVLDRAA 146


>gi|52840964|ref|YP_094763.1| transcription termination factor NusB [Legionella pneumophila
           subsp. pneumophila str. Philadelphia 1]
 gi|52628075|gb|AAU26816.1| transcription termination factor NusB [Legionella pneumophila
           subsp. pneumophila str. Philadelphia 1]
          Length = 123

 Score = 46.6 bits (109), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 26/94 (27%), Positives = 52/94 (55%), Gaps = 4/94 (4%)

Query: 64  VDLEWFRVIIHGVMDRKQHIDLLISSCLTE-KWSFSRLDMILCSILRAGVLELIECHSVP 122
           VD E+F  +++G+     H++ L +S L       + L+ I  ++LR G  EL  C  +P
Sbjct: 22  VDGEYFCRLLYGI---PTHVEALEASLLPYLDREINALNPIELTVLRIGSFELFHCPEIP 78

Query: 123 VEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRK 156
            +VI+ E V +  +F   +  +++N VL+ ++++
Sbjct: 79  YKVILDESVSLTKEFGSQEGYRYVNGVLNNLAKQ 112


>gi|290968307|ref|ZP_06559849.1| transcription antitermination factor NusB [Megasphaera genomosp.
           type_1 str. 28L]
 gi|290781666|gb|EFD94252.1| transcription antitermination factor NusB [Megasphaera genomosp.
           type_1 str. 28L]
          Length = 141

 Score = 46.2 bits (108), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 26/88 (29%), Positives = 47/88 (53%), Gaps = 2/88 (2%)

Query: 72  IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLEL-IECHSVPVEVIISEY 130
           ++  V  RK+ +D +I S L + W   RL+    +I+R  + E+      VP  V+++E 
Sbjct: 54  LVQTVGARKEELDRIIGS-LAKDWDIQRLNYTEKNIMRLALCEMKYPKEPVPTAVVLNEA 112

Query: 131 VCIAHDFFYGDEPKFINAVLDKVSRKEE 158
           V +A ++   +  +F+N VL   SR +E
Sbjct: 113 VLLAKEYCSSEAARFVNGVLGTYSRMKE 140


>gi|28378299|ref|NP_785191.1| transcription antitermination protein NusB [Lactobacillus plantarum
           WCFS1]
 gi|32171607|sp|Q88WM9|NUSB_LACPL RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|28271134|emb|CAD64039.1| transcription termination factor NusB [Lactobacillus plantarum
           WCFS1]
          Length = 139

 Score = 46.2 bits (108), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 26/90 (28%), Positives = 43/90 (47%)

Query: 68  WFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVII 127
           +   ++ GV + +  +D  I   L++KWS  RL      ILR    EL     VP +V +
Sbjct: 48  YLSTLVTGVREHQVELDAQIQPYLSQKWSLDRLAKTDLIILRIAFFELQFVDDVPTKVAV 107

Query: 128 SEYVCIAHDFFYGDEPKFINAVLDKVSRKE 157
           +E + +   F      KF++ VL KV + +
Sbjct: 108 NEAIELTKAFSDDRSRKFVSGVLGKVVKNQ 137


>gi|282858295|ref|ZP_06267480.1| transcription antitermination factor NusB [Prevotella bivia
           JCVIHMP010]
 gi|282588926|gb|EFB94046.1| transcription antitermination factor NusB [Prevotella bivia
           JCVIHMP010]
          Length = 337

 Score = 46.2 bits (108), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 31/132 (23%), Positives = 61/132 (46%), Gaps = 17/132 (12%)

Query: 24  VQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHI 83
           V+ + + D    +  E++ E++          D+      +DL  FR  I      +Q++
Sbjct: 182 VKTIKRFDPANGADQELLPEFK----------DIADRQFAIDL--FRSTIMNAETYQQYM 229

Query: 84  DLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEP 143
                S  +  W FSRL  +   I++  + E++   ++P+ V I+EYV +A  +      
Sbjct: 230 -----SEASHNWDFSRLAYMDVVIMQIAIAEIVNFPNIPISVSINEYVNLAKLYSTPRSG 284

Query: 144 KFINAVLDKVSR 155
            +IN +LD ++R
Sbjct: 285 GYINGMLDSIAR 296


>gi|46447257|ref|YP_008622.1| putative transcription termination factor, nusB [Candidatus
           Protochlamydia amoebophila UWE25]
 gi|46400898|emb|CAF24347.1| putative transcription termination factor, nusB [Candidatus
           Protochlamydia amoebophila UWE25]
          Length = 154

 Score = 46.2 bits (108), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 24/82 (29%), Positives = 47/82 (57%), Gaps = 3/82 (3%)

Query: 89  SCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINA 148
           S ++  + F+R+  +  +ILR GV EL     +P +V+I+E + ++  F   +   F+NA
Sbjct: 38  SSVSLSYHFNRIQTVTKNILRLGVFELFFETDIPQKVVIAEAIRLSRKFSTPESASFVNA 97

Query: 149 VLDKV---SRKEEIKRSGCVSA 167
           +LD++   S+ EE+  +  V +
Sbjct: 98  LLDQLYQKSKGEEVNSNLLVES 119


>gi|260553344|ref|ZP_05825958.1| transcription termination factor [Acinetobacter sp. RUH2624]
 gi|260405181|gb|EEW98679.1| transcription termination factor [Acinetobacter sp. RUH2624]
          Length = 149

 Score = 46.2 bits (108), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 28/98 (28%), Positives = 50/98 (51%), Gaps = 2/98 (2%)

Query: 57  VESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELI 116
            E+    VDL ++  ++  V+ + + +D L+   L  +     LD +  + LR G  EL 
Sbjct: 42  AENAMHKVDLSYYHELLTQVIAQHEDLDALLIPVLDRE--IDALDGVELATLRLGAYELR 99

Query: 117 ECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVS 154
           +   +P  V++ E + +A  F   D  K+IN VLD++S
Sbjct: 100 DHLEIPYRVVLDEAIELAKHFGGADSHKYINGVLDRLS 137


>gi|167563762|ref|ZP_02356678.1| transcription antitermination protein NusB [Burkholderia
           oklahomensis EO147]
 gi|167570906|ref|ZP_02363780.1| transcription antitermination protein NusB [Burkholderia
           oklahomensis C6786]
          Length = 145

 Score = 46.2 bits (108), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 44/147 (29%), Positives = 61/147 (41%), Gaps = 14/147 (9%)

Query: 10  LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF 69
           +K S RR  +R  A Q LYQ  +   +  EI           D +L     Y   D    
Sbjct: 1   MKKSARRQ-SRELATQGLYQWLLSNAAPGEI-----------DAQLRGALGYDKADKTLL 48

Query: 70  RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISE 129
             I+HGV+     +   IS  L       +L  +  ++L     EL      P  VII+E
Sbjct: 49  DTILHGVIREHAALAEAISPSLDR--PIDQLSPVERAVLLIATYELTHQIETPYRVIINE 106

Query: 130 YVCIAHDFFYGDEPKFINAVLDKVSRK 156
            V +A  F   D  K++N VLDK+S K
Sbjct: 107 AVELAKTFGGSDGYKYVNGVLDKLSVK 133


>gi|58583474|ref|YP_202490.1| transcription antitermination protein NusB [Xanthomonas oryzae pv.
           oryzae KACC10331]
 gi|84625287|ref|YP_452659.1| transcription antitermination protein NusB [Xanthomonas oryzae pv.
           oryzae MAFF 311018]
 gi|188575269|ref|YP_001912198.1| transcription antitermination protein NusB [Xanthomonas oryzae pv.
           oryzae PXO99A]
 gi|75434146|sp|Q5GW16|NUSB_XANOR RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|119390848|sp|Q2NZ92|NUSB_XANOM RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|238689535|sp|B2SNW5|NUSB_XANOP RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|58428068|gb|AAW77105.1| transcription termination factor NusB [Xanthomonas oryzae pv.
           oryzae KACC10331]
 gi|84369227|dbj|BAE70385.1| N utilization substance protein B homolog [Xanthomonas oryzae pv.
           oryzae MAFF 311018]
 gi|188519721|gb|ACD57666.1| transcription antitermination factor NusB [Xanthomonas oryzae pv.
           oryzae PXO99A]
          Length = 156

 Score = 46.2 bits (108), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 31/130 (23%), Positives = 57/130 (43%), Gaps = 13/130 (10%)

Query: 25  QALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHID 84
           QA+Y   I G    ++I+++             E  +   DL +F  ++ GV+  +  +D
Sbjct: 30  QAVYAWQISGGFAKQVIAQFAH-----------EQAHEVADLAYFENLVEGVLTNRAELD 78

Query: 85  LLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPK 144
             ++  L        +D I  ++LR    EL+    VP  V+I+E +  A  F       
Sbjct: 79  TALTPYLDR--GVEEVDAIERAVLRLAAYELLYRQDVPYRVVINEAIETAKRFGSEHGHT 136

Query: 145 FINAVLDKVS 154
           ++N VLD+ +
Sbjct: 137 YVNGVLDRAA 146


>gi|257468965|ref|ZP_05633059.1| transcription antitermination protein NusB [Fusobacterium ulcerans
           ATCC 49185]
 gi|317063213|ref|ZP_07927698.1| N utilization substance protein B [Fusobacterium ulcerans ATCC
           49185]
 gi|313688889|gb|EFS25724.1| N utilization substance protein B [Fusobacterium ulcerans ATCC
           49185]
          Length = 132

 Score = 46.2 bits (108), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 39/141 (27%), Positives = 70/141 (49%), Gaps = 17/141 (12%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVD-LEWFRVIIH 74
           R +AR    + +++ +I   +T +I+  Y          L  E V  + + + + +  ++
Sbjct: 3   RRLAREELFKLVFEGEIKEENTKDILESY----------LKREEVLQNENEITFIKKYMN 52

Query: 75  GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134
           G+ +    I   I   +T  WSF R+  +  ++L+  V E++ C   P E++I+E V +A
Sbjct: 53  GIAENNDRILKTIEEKIT-GWSFERIGNVEKALLKISVYEIL-CEDTPHEIVINEAVELA 110

Query: 135 HDFFYGDEP--KFINAVLDKV 153
               YGDE   +FIN VL KV
Sbjct: 111 K--MYGDEKTSEFINGVLAKV 129


>gi|302387570|ref|YP_003823392.1| NusB antitermination factor [Clostridium saccharolyticum WM1]
 gi|302198198|gb|ADL05769.1| NusB antitermination factor [Clostridium saccharolyticum WM1]
          Length = 147

 Score = 46.2 bits (108), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 28/86 (32%), Positives = 43/86 (50%), Gaps = 1/86 (1%)

Query: 68  WFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVII 127
           + R     VM R   +DL I+  + E W   R+     +ILR  + E++    VP +V I
Sbjct: 62  YLRERAESVMARIPELDLKINE-VAEGWKTKRMGKAELTILRLALYEILFDEDVPEKVAI 120

Query: 128 SEYVCIAHDFFYGDEPKFINAVLDKV 153
           +E V +A  +   + P FIN VL K+
Sbjct: 121 NEAVELAKKYGGNEAPAFINGVLAKL 146


>gi|91774848|ref|YP_544604.1| NusB antitermination factor [Methylobacillus flagellatus KT]
 gi|119390784|sp|Q1H424|NUSB_METFK RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|91708835|gb|ABE48763.1| NusB antitermination factor [Methylobacillus flagellatus KT]
          Length = 154

 Score = 46.2 bits (108), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 34/112 (30%), Positives = 56/112 (50%), Gaps = 5/112 (4%)

Query: 54  ELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVL 113
           EL  +  +   D E+FR ++ GV +    +D  ++  L  +   S L  I  +IL     
Sbjct: 43  ELADDPDFDRADYEYFRQLLEGVAESIDELDARLAGLLDRQ--VSELSPIEHAILCIAAY 100

Query: 114 ELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKV---SRKEEIKRS 162
           ELI   ++P  V I+E V +A  +   D  K++N VLDK+   +R +E +R 
Sbjct: 101 ELIHDVTIPYRVAINEGVELAKLYGGTDGHKYVNGVLDKIAAEARPDEFQRG 152


>gi|323344945|ref|ZP_08085169.1| NusB family protein [Prevotella oralis ATCC 33269]
 gi|323094215|gb|EFZ36792.1| NusB family protein [Prevotella oralis ATCC 33269]
          Length = 329

 Score = 46.2 bits (108), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 38/149 (25%), Positives = 67/149 (44%), Gaps = 17/149 (11%)

Query: 7   KKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDL 66
           +K+L  +  + I     ++ + + D    S  E++ EY+          D+E       L
Sbjct: 165 EKNLYWNDDKEIVDTFVLKTIKRFDPKNKSKQELLPEYK----------DMEDKDFACKL 214

Query: 67  EWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVI 126
             FR  I    D+ QH      S  +  W FSRL  +   I++  + E++   ++PV V 
Sbjct: 215 --FRATILNA-DQYQHY----MSETSRNWDFSRLAYMDVVIMQIAIAEMLTFPNIPVSVT 267

Query: 127 ISEYVCIAHDFFYGDEPKFINAVLDKVSR 155
           I+EYV +A  +       +IN +LD ++R
Sbjct: 268 INEYVDLAKLYSTPKSGGYINGMLDSIAR 296


>gi|331701511|ref|YP_004398470.1| NusB antitermination factor [Lactobacillus buchneri NRRL B-30929]
 gi|329128854|gb|AEB73407.1| NusB antitermination factor [Lactobacillus buchneri NRRL B-30929]
          Length = 137

 Score = 46.2 bits (108), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 25/84 (29%), Positives = 40/84 (47%)

Query: 67  EWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVI 126
           E+   +I GV++ K  ID  I   L   WS  R+      IL   + E++    +P +V 
Sbjct: 45  EYLHQLISGVLEHKSEIDHTIEKYLASSWSLERIARTDLIILEIAIYEMVYVDDMPAKVS 104

Query: 127 ISEYVCIAHDFFYGDEPKFINAVL 150
           I+E + +A  F      KF+N +L
Sbjct: 105 INEAIELAKKFSDDRSRKFVNGIL 128


>gi|300771100|ref|ZP_07080976.1| NusB family protein [Sphingobacterium spiritivorum ATCC 33861]
 gi|300761770|gb|EFK58590.1| NusB family protein [Sphingobacterium spiritivorum ATCC 33861]
          Length = 304

 Score = 46.2 bits (108), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 23/76 (30%), Positives = 43/76 (56%), Gaps = 4/76 (5%)

Query: 92  TEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLD 151
           T+ W   R+ ++   ++R  + ELI   S+PV+V I+EY+ ++  F       FIN +LD
Sbjct: 224 TKNWEADRIALLDTILMRMAICELINFSSIPVKVTINEYIELSKVFSTLKSNTFINGILD 283

Query: 152 KV----SRKEEIKRSG 163
           K+    +++  I++ G
Sbjct: 284 KILADLNQQGRIRKQG 299


>gi|253581940|ref|ZP_04859164.1| N utilization substance protein B [Fusobacterium varium ATCC 27725]
 gi|251836289|gb|EES64826.1| N utilization substance protein B [Fusobacterium varium ATCC 27725]
          Length = 132

 Score = 46.2 bits (108), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 36/141 (25%), Positives = 72/141 (51%), Gaps = 17/141 (12%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVD-LEWFRVIIH 74
           R +AR    + +++ +I   +T +I+  Y          L+ E +  + + + + +  ++
Sbjct: 3   RRLAREELFKLVFEGEIKEENTKDILESY----------LNREEILQNENEIAFIKKYMN 52

Query: 75  GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134
           G+ +    I  +I   +T  WSF R+  +  ++L+  V E++ C   P E++I+E V +A
Sbjct: 53  GIAENNDKILKVIEEKIT-GWSFERIGNVEKALLKISVYEIL-CEDTPYEIVINEAVELA 110

Query: 135 HDFFYGDEP--KFINAVLDKV 153
               YGDE   +F+N VL K+
Sbjct: 111 K--IYGDEKTSEFLNGVLAKI 129


>gi|199597165|ref|ZP_03210597.1| transcription antitermination protein NusB [Lactobacillus rhamnosus
           HN001]
 gi|258508679|ref|YP_003171430.1| transcription antitermination protein NusB [Lactobacillus rhamnosus
           GG]
 gi|258539856|ref|YP_003174355.1| transcription antitermination protein NusB [Lactobacillus rhamnosus
           Lc 705]
 gi|199591969|gb|EDZ00044.1| transcription antitermination protein NusB [Lactobacillus rhamnosus
           HN001]
 gi|257148606|emb|CAR87579.1| N utilization substance protein B homolog [Lactobacillus rhamnosus
           GG]
 gi|257151532|emb|CAR90504.1| N utilization substance protein B homolog [Lactobacillus rhamnosus
           Lc 705]
 gi|259649985|dbj|BAI42147.1| transcription antitermination protein NusB [Lactobacillus rhamnosus
           GG]
          Length = 135

 Score = 46.2 bits (108), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 28/105 (26%), Positives = 50/105 (47%), Gaps = 6/105 (5%)

Query: 52  DTELDVESVYLHV---DLE---WFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILC 105
           + E D  +VY  V   D E   +   ++ GV+  +  +D  ++  L + W+ SRL     
Sbjct: 21  NPEADKNAVYAEVLPKDTEVPSYLTALVEGVLANQAALDAALTPQLKKGWTLSRLTKPDL 80

Query: 106 SILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVL 150
            ILR G+ E+    ++P    I+E + +A  +      KF+N +L
Sbjct: 81  IILRLGLYEIRYEEAMPEAAAINEAINLAKRYSDEQSAKFVNGIL 125


>gi|111224614|ref|YP_715408.1| antitermination factor NusB [Frankia alni ACN14a]
 gi|111152146|emb|CAJ63876.1| Antitermination factor NusB [Frankia alni ACN14a]
          Length = 124

 Score = 46.2 bits (108), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 26/85 (30%), Positives = 44/85 (51%), Gaps = 1/85 (1%)

Query: 67  EWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVI 126
           E+   ++ GV++  + I+  I     E W+  R+  +  +ILR  VLEL+    VP  V+
Sbjct: 23  EYAEGLVRGVVEHWREINERIGRH-AEGWTLERMPPVDRNILRIAVLELLWRPDVPPRVV 81

Query: 127 ISEYVCIAHDFFYGDEPKFINAVLD 151
           I E V +A +      P F+N ++D
Sbjct: 82  IDEAVELAKNLSTDRSPSFVNGLVD 106


>gi|16331086|ref|NP_441814.1| transcription antitermination protein NusB [Synechocystis sp. PCC
           6803]
 gi|1653579|dbj|BAA18492.1| N utilization substance protein B [Synechocystis sp. PCC 6803]
          Length = 275

 Score = 46.2 bits (108), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 31/86 (36%), Positives = 46/86 (53%), Gaps = 2/86 (2%)

Query: 72  IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
           +I  V  R+Q ID  +   + + W  SRL  I   ILR  + EL +   VP +V I+E V
Sbjct: 180 LIGTVCRRRQQIDEQLQEAMVD-WQLSRLAKIDQDILRLAIAEL-DYLGVPQKVAINEAV 237

Query: 132 CIAHDFFYGDEPKFINAVLDKVSRKE 157
            +A  +   D  +FIN VL +V+ K+
Sbjct: 238 ELAKRYSGQDGHRFINGVLRRVTEKK 263


>gi|325918406|ref|ZP_08180534.1| transcription antitermination factor NusB [Xanthomonas vesicatoria
           ATCC 35937]
 gi|325535368|gb|EGD07236.1| transcription antitermination factor NusB [Xanthomonas vesicatoria
           ATCC 35937]
          Length = 156

 Score = 46.2 bits (108), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 31/130 (23%), Positives = 56/130 (43%), Gaps = 13/130 (10%)

Query: 25  QALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHID 84
           QA+Y   I G    ++I ++             E  +   DL +F  ++ GV+  +  +D
Sbjct: 30  QAVYAWQISGGFAKQVIGQFAH-----------EQAHEVADLAYFESLVEGVLTHRAELD 78

Query: 85  LLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPK 144
             ++  L        +D I  ++LR    EL+    VP  V+I+E +  A  F       
Sbjct: 79  TALTPYLDR--GVEEVDAIERAVLRLAAYELLYRQDVPYRVVINEAIETAKRFGSEHGHT 136

Query: 145 FINAVLDKVS 154
           ++N VLD+ +
Sbjct: 137 YVNGVLDRAA 146


>gi|229174859|ref|ZP_04302379.1| N utilization substance protein B [Bacillus cereus MM3]
 gi|228608527|gb|EEK65829.1| N utilization substance protein B [Bacillus cereus MM3]
          Length = 114

 Score = 46.2 bits (108), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 30/89 (33%), Positives = 47/89 (52%), Gaps = 5/89 (5%)

Query: 67  EWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVI 126
           ++   ++ G ++ K+ ID  I   L +KW   R+ ++  SILR  V E+     +P  V 
Sbjct: 25  DFLESLVVGFVENKEVIDEAIRQNL-KKWKLERISIVDRSILRVAVYEMKYMEEIPHNVT 83

Query: 127 ISEYVCIAHDFFYGDEP--KFINAVLDKV 153
           I+E + IA  F  GDE   +FIN VL  +
Sbjct: 84  INEAIEIAKTF--GDEESRRFINGVLSNI 110


>gi|227540276|ref|ZP_03970325.1| N utilization substance protein [Sphingobacterium spiritivorum ATCC
           33300]
 gi|227239812|gb|EEI89827.1| N utilization substance protein [Sphingobacterium spiritivorum ATCC
           33300]
          Length = 300

 Score = 46.2 bits (108), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 23/76 (30%), Positives = 43/76 (56%), Gaps = 4/76 (5%)

Query: 92  TEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLD 151
           T+ W   R+ ++   ++R  + ELI   S+PV+V I+EY+ ++  F       FIN +LD
Sbjct: 220 TKNWEADRIALLDTILMRMAICELINFSSIPVKVTINEYIELSKVFSTLKSNTFINGILD 279

Query: 152 KV----SRKEEIKRSG 163
           K+    +++  I++ G
Sbjct: 280 KILADLNQQGRIRKQG 295


>gi|308069602|ref|YP_003871207.1| N utilization substance protein B-like protein [Paenibacillus
           polymyxa E681]
 gi|305858881|gb|ADM70669.1| N utilization substance protein B-like protein [Paenibacillus
           polymyxa E681]
          Length = 149

 Score = 46.2 bits (108), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 26/81 (32%), Positives = 42/81 (51%), Gaps = 1/81 (1%)

Query: 73  IHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVC 132
           + G  + K+ ID L+   L + W  SRL  +   ILR    E+I    VP +V ++E + 
Sbjct: 59  VRGTWEHKEAIDGLLVDYL-KGWQISRLSRVDRQILRLAAYEMIFREDVPAKVAVNEAIE 117

Query: 133 IAHDFFYGDEPKFINAVLDKV 153
           ++  F   +  KF+N VL +V
Sbjct: 118 LSKHFGTEESGKFVNGVLGRV 138


>gi|291542594|emb|CBL15704.1| ribosomal RNA small subunit methyltransferase RsmB [Ruminococcus
           bromii L2-63]
          Length = 446

 Score = 46.2 bits (108), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 26/95 (27%), Positives = 49/95 (51%), Gaps = 2/95 (2%)

Query: 64  VDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPV 123
           VD  +   +++GV++R+  +D +I S    K    +++    +ILR G+L+L+    VP 
Sbjct: 38  VDSSFVSALVYGVLERRITLDYIIRS--YSKIPLRKIETKTKNILRLGILQLLFMDKVPD 95

Query: 124 EVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEE 158
              ++E V +A          FIN +L  ++R E+
Sbjct: 96  SAAVNESVNLAKKHKLQKSSGFINGILRNITRAED 130


>gi|313884728|ref|ZP_07818484.1| transcription antitermination factor NusB [Eremococcus coleocola
           ACS-139-V-Col8]
 gi|312620096|gb|EFR31529.1| transcription antitermination factor NusB [Eremococcus coleocola
           ACS-139-V-Col8]
          Length = 158

 Score = 46.2 bits (108), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 40/139 (28%), Positives = 66/139 (47%), Gaps = 9/139 (6%)

Query: 15  RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74
            R  AR  AVQALY  D     +   + +     F  ++    +  Y  V  ++  ++++
Sbjct: 7   NRSQARQVAVQALY--DYTHFESNNDLDQ--ALDFALESGHFPDQGYDEVANDYLYLLLN 62

Query: 75  GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELI--ECHSVPVEVIISEYVC 132
           GV+D    ID  I   L + W+ +R+  I  +ILR    EL+  +   VP  V + E + 
Sbjct: 63  GVVDHLSEIDAHIEKYL-KNWTLARIARIDLNILRVAFFELLYMDKEDVPARVTVDEAIE 121

Query: 133 IAHDFFYGDEPK-FINAVL 150
           ++  FF  D+ + FIN VL
Sbjct: 122 LSK-FFSDDKSRQFINGVL 139


>gi|291456359|ref|ZP_06595749.1| transcription antitermination factor NusB [Bifidobacterium breve
           DSM 20213]
 gi|291381636|gb|EFE89154.1| transcription antitermination factor NusB [Bifidobacterium breve
           DSM 20213]
          Length = 176

 Score = 46.2 bits (108), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 38/150 (25%), Positives = 65/150 (43%), Gaps = 12/150 (8%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           R  AR  A+  LY+ D  G     ++ E   +   A T L           ++   I+ G
Sbjct: 3   RSTARKRALNTLYEADEKGQDILSLLDERIAHP-GAQTPL----------PDYAIDIVKG 51

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
           V + ++ ID+ +    T  W   R+ ++  +ILR    E++    VP +V I E + +A 
Sbjct: 52  VAEHRRQIDMTLDDHST-GWKVRRMGVVDRNILRIAAWEILFNDEVPDKVAIDEALALAK 110

Query: 136 DFFYGDEPKFINAVLDKVSRKEEIKRSGCV 165
                D P FI+ +L  V   +  + +G V
Sbjct: 111 TLCDDDSPAFIHGLLSAVCNAKNTEPAGSV 140


>gi|254180977|ref|ZP_04887575.1| transcription antitermination factor NusB [Burkholderia
           pseudomallei 1655]
 gi|184211516|gb|EDU08559.1| transcription antitermination factor NusB [Burkholderia
           pseudomallei 1655]
          Length = 145

 Score = 46.2 bits (108), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 42/147 (28%), Positives = 64/147 (43%), Gaps = 14/147 (9%)

Query: 10  LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF 69
           +K S RR  +R  A Q LYQ  +   + +EI           D +L     Y   D    
Sbjct: 1   MKKSARRQ-SRELATQGLYQWLLSNAAPSEI-----------DAQLRGALGYDKADKTLL 48

Query: 70  RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISE 129
             I+HGV+  ++H  L  +   +      +L  +  ++L     EL      P  VII+E
Sbjct: 49  DTILHGVI--REHATLAEAISPSLDRPIDQLSPVERAVLLIATYELTHQIETPYRVIINE 106

Query: 130 YVCIAHDFFYGDEPKFINAVLDKVSRK 156
            V +A  F   D  K++N VLDK++ K
Sbjct: 107 AVELAKTFGGSDGYKYVNGVLDKLAVK 133


>gi|315608439|ref|ZP_07883427.1| NusB family protein [Prevotella buccae ATCC 33574]
 gi|315249899|gb|EFU29900.1| NusB family protein [Prevotella buccae ATCC 33574]
          Length = 345

 Score = 46.2 bits (108), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 32/132 (24%), Positives = 57/132 (43%), Gaps = 17/132 (12%)

Query: 24  VQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHI 83
           V+ + + D    S  E++ EY+      D E          D E+ R +    +      
Sbjct: 182 VKTIKRFDPANKSNQELLPEYK------DEE----------DREFARKLFRATILNADQY 225

Query: 84  DLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEP 143
              +S   +  W FSRL  +   I++  + E++    +PV V I+EYV +A  +      
Sbjct: 226 QRYMSDA-SRNWDFSRLAYMDVVIMQIAIAEMLTFPGIPVSVTINEYVNLAKVYSTPRSG 284

Query: 144 KFINAVLDKVSR 155
            +IN +LD ++R
Sbjct: 285 GYINGMLDNIAR 296


>gi|260495022|ref|ZP_05815151.1| transcription antitermination factor NusB [Fusobacterium sp.
           3_1_33]
 gi|260197465|gb|EEW94983.1| transcription antitermination factor NusB [Fusobacterium sp.
           3_1_33]
          Length = 157

 Score = 46.2 bits (108), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 35/120 (29%), Positives = 61/120 (50%), Gaps = 20/120 (16%)

Query: 59  SVYLHVD-----------LEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSI 107
           SVYL  D           LE+ +  I+ +++   +I  +I    T+ W++ R+ +I  S+
Sbjct: 45  SVYLQNDEEFINALSEKQLEFIKNSINRIVENYDNIKDVIKKN-TQNWTYERIGVIERSL 103

Query: 108 LRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEP--KFINAVLDKVSRKEEIKRSGCV 165
           L  G  E +   + P+EVI +E V +A +  YG+E   +FIN +L  +   E+ K  G +
Sbjct: 104 LIVGTYEFL-IKNTPIEVIANEIVELAKE--YGNEKSYEFINGILANI---EKAKNKGTI 157


>gi|221195846|ref|ZP_03568899.1| transcription antitermination factor NusB [Atopobium rimae ATCC
           49626]
 gi|221184320|gb|EEE16714.1| transcription antitermination factor NusB [Atopobium rimae ATCC
           49626]
          Length = 161

 Score = 46.2 bits (108), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 33/140 (23%), Positives = 70/140 (50%), Gaps = 16/140 (11%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEII-SEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74
           R +AR  A+Q L+Q +    +  E++  EY      ++  LD  +  L    +  R    
Sbjct: 8   RTLARSQALQLLFQAEQTNRTVEEVLQGEY----VLSEGPLDPYAEKLACGTDGIR---- 59

Query: 75  GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134
                   +D+++++  +  WS SR+  +  ++L+  + E++E   V V + I+E + ++
Sbjct: 60  ------DDLDMILNA-YSHGWSVSRMPSVDRNLLQLSLYEMLEVSEVDVSITINEVIELS 112

Query: 135 HDFFYGDEPKFINAVLDKVS 154
           H +   + P+FIN +L +V+
Sbjct: 113 HAYCGDESPRFINGILGRVA 132


>gi|34556732|ref|NP_906547.1| transcription antitermination protein NusB [Wolinella succinogenes
           DSM 1740]
 gi|39931695|sp|Q7MAE9|NUSB_WOLSU RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|34482446|emb|CAE09447.1| TRANSCRIPTION TERMINATION PROTEIN [Wolinella succinogenes]
          Length = 135

 Score = 46.2 bits (108), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 44/136 (32%), Positives = 61/136 (44%), Gaps = 13/136 (9%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           R  AR A V  LY  D+     TEI       +F    EL  E    +   E+   +  G
Sbjct: 4   RAQAREAVVSLLYAYDM---GNTEI------RKFA--IELLEEKRIKNRQQEFALELFDG 52

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
            +     ID  I   L E W FSR+  +  +ILR G  E++    V   VII+E V ++ 
Sbjct: 53  TIAHLGEIDEEIKKHLKE-WDFSRIGDMERAILRLGTFEIV-YSGVDRAVIINEAVELSK 110

Query: 136 DFFYGDEPKFINAVLD 151
            F   + P+F+N VLD
Sbjct: 111 TFGNDNSPRFVNGVLD 126


>gi|121605810|ref|YP_983139.1| transcription antitermination protein NusB [Polaromonas
           naphthalenivorans CJ2]
 gi|120594779|gb|ABM38218.1| NusB antitermination factor [Polaromonas naphthalenivorans CJ2]
          Length = 173

 Score = 45.8 bits (107), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 38/140 (27%), Positives = 66/140 (47%), Gaps = 15/140 (10%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLH-VDLEWFRVIIH 74
           R  AR  A+QALYQ  ++G +  + I  +             + V  H  D   +  ++H
Sbjct: 32  RTRAREFALQALYQ-HLVGQNGADSIDAFTR-----------DLVGFHKADSAHYDALLH 79

Query: 75  GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134
           G ++ ++ +D  I+  L  K   + +  +  +IL  G  E   C  VP  V+I+E + +A
Sbjct: 80  GCIESEKALDENITPLLDRK--MAEISPVEHAILWIGAYEFTNCLDVPYRVVINECIELA 137

Query: 135 HDFFYGDEPKFINAVLDKVS 154
             F   D  K++N VL K++
Sbjct: 138 KAFGGTDGHKYVNGVLHKMA 157


>gi|288926808|ref|ZP_06420717.1| NusB family protein [Prevotella buccae D17]
 gi|288336437|gb|EFC74814.1| NusB family protein [Prevotella buccae D17]
          Length = 320

 Score = 45.8 bits (107), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 32/132 (24%), Positives = 57/132 (43%), Gaps = 17/132 (12%)

Query: 24  VQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHI 83
           V+ + + D    S  E++ EY+      D E          D E+ R +    +      
Sbjct: 157 VKTIKRFDPANKSNQELLPEYK------DEE----------DREFARKLFRATILNADQY 200

Query: 84  DLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEP 143
              +S   +  W FSRL  +   I++  + E++    +PV V I+EYV +A  +      
Sbjct: 201 QRYMSDA-SRNWDFSRLAYMDVVIMQIAIAEMLTFPGIPVSVTINEYVNLAKVYSTPRSG 259

Query: 144 KFINAVLDKVSR 155
            +IN +LD ++R
Sbjct: 260 GYINGMLDNIAR 271


>gi|326692420|ref|ZP_08229425.1| N utilization substance protein B [Leuconostoc argentinum KCTC
           3773]
          Length = 138

 Score = 45.8 bits (107), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 37/135 (27%), Positives = 63/135 (46%), Gaps = 14/135 (10%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           R  +R AA Q L+ ++    S + I S YE      D +            ++   +++G
Sbjct: 6   RHESRQAAFQVLFALEKDPTSNS-IDSLYEIVLDGKDYD------------DYLPRLVNG 52

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
           V+  K  +D  I++ L   W+ +R++     ILR  + EL     VP +V I E + +A 
Sbjct: 53  VLGSKADLDAHITAHLATGWAINRINKADLVILRLAIYEL-NNQLVPYKVAIDEALILAK 111

Query: 136 DFFYGDEPKFINAVL 150
            F   D+ KF+N +L
Sbjct: 112 TFADEDDRKFVNGLL 126


>gi|169831182|ref|YP_001717164.1| NusB antitermination factor [Candidatus Desulforudis audaxviator
           MP104C]
 gi|238688239|sp|B1I3I9|NUSB_DESAP RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|169638026|gb|ACA59532.1| NusB antitermination factor [Candidatus Desulforudis audaxviator
           MP104C]
          Length = 138

 Score = 45.8 bits (107), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 33/144 (22%), Positives = 66/144 (45%), Gaps = 12/144 (8%)

Query: 15  RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74
           +R   R  A+Q L+Q ++   S     +      F  +TE          D  + + ++ 
Sbjct: 2   KRRRQRETALQVLFQAEVARISGERAFARTMEL-FGLNTE----------DFAYAQELVD 50

Query: 75  GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134
           GV+ +   +D +IS   + +W   R+  +  +I+R  + E+     +P+ V ++E + +A
Sbjct: 51  GVLAKVDRLDRIISRV-SHEWRLERMANVDRNIIRLALYEVFFRDDIPINVAVNEALELA 109

Query: 135 HDFFYGDEPKFINAVLDKVSRKEE 158
             F   D  +F+N +L KV  + E
Sbjct: 110 RTFGTEDSRRFVNGILGKVVEEPE 133


>gi|224437825|ref|ZP_03658772.1| transcription antitermination protein NusB [Helicobacter cinaedi
           CCUG 18818]
 gi|313144273|ref|ZP_07806466.1| transcription antitermination protein NusB [Helicobacter cinaedi
           CCUG 18818]
 gi|313129304|gb|EFR46921.1| transcription antitermination protein NusB [Helicobacter cinaedi
           CCUG 18818]
          Length = 165

 Score = 45.8 bits (107), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 29/88 (32%), Positives = 47/88 (53%), Gaps = 7/88 (7%)

Query: 71  VIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEY 130
           +++ G +   Q ID  I   L E W FSRL  +  ++LR G  E++   +    V+I+E 
Sbjct: 48  LLLQGAITNLQSIDEAIIPYLKE-WDFSRLGGMEKAVLRLGAYEILYTDT-DSPVVINEA 105

Query: 131 VCIAHDFFYGDE---PKFINAVLDKVSR 155
           + +     YG E   P+F+N VLD +S+
Sbjct: 106 IELGK--MYGGEDNTPRFLNGVLDALSK 131


>gi|322390165|ref|ZP_08063697.1| N utilization substance protein B [Streptococcus parasanguinis ATCC
           903]
 gi|321143125|gb|EFX38571.1| N utilization substance protein B [Streptococcus parasanguinis ATCC
           903]
          Length = 143

 Score = 45.8 bits (107), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 30/96 (31%), Positives = 48/96 (50%), Gaps = 2/96 (2%)

Query: 63  HVDLEWFRV-IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSV 121
            VDL  F + ++ GV   K  +D  I   L   W+  RL ++  +ILR G+ E+ E  + 
Sbjct: 49  EVDLPAFLMNLVTGVYQSKDQLDQQIGQHLKTGWTVERLTLVEKNILRLGIYEMTEFDT- 107

Query: 122 PVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKE 157
           P  V ++E V +A  F      +F+N VL +   +E
Sbjct: 108 PQIVAVNEAVELAKAFSDETSSRFVNGVLSQFVTEE 143


>gi|225570633|ref|ZP_03779656.1| hypothetical protein CLOHYLEM_06733 [Clostridium hylemonae DSM
           15053]
 gi|225160551|gb|EEG73170.1| hypothetical protein CLOHYLEM_06733 [Clostridium hylemonae DSM
           15053]
          Length = 132

 Score = 45.8 bits (107), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 33/115 (28%), Positives = 54/115 (46%), Gaps = 11/115 (9%)

Query: 49  FCADTELDVESVYLHV---------DLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSR 99
           FC + EL  E + L+          DL++       +  + + ID LI+  +T  W   R
Sbjct: 19  FCGEEELP-EQLALYEEQLDSAGEEDLKYISGKSRNIAAKTEEIDRLINEHVT-GWKTGR 76

Query: 100 LDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVS 154
           ++ +  +ILR  V E+     VP  V I E V +A  +   + P F+N VL K++
Sbjct: 77  MNKVDLTILRLAVYEMNWDEDVPTGVAIDEAVELAKKYSGEEGPAFVNGVLAKLA 131


>gi|319956407|ref|YP_004167670.1| nusb antitermination factor [Nitratifractor salsuginis DSM 16511]
 gi|319418811|gb|ADV45921.1| NusB antitermination factor [Nitratifractor salsuginis DSM 16511]
          Length = 143

 Score = 45.8 bits (107), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 30/85 (35%), Positives = 44/85 (51%), Gaps = 4/85 (4%)

Query: 72  IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLE-LIECHSVPVEVIISEY 130
           +  G ++    ID  I   L E W +S++  +  +ILR G  E LIE    P+  II+E 
Sbjct: 49  LFKGTIENLDKIDEEIQKHL-ESWDYSKIGKVEKAILRLGAYEILIEGTDRPI--IINEA 105

Query: 131 VCIAHDFFYGDEPKFINAVLDKVSR 155
           V +A +      P+FIN VLD V +
Sbjct: 106 VELAKELADEKSPQFINGVLDAVGK 130


>gi|332077717|gb|EGI88178.1| transcription antitermination factor NusB [Streptococcus pneumoniae
           GA41301]
          Length = 121

 Score = 45.8 bits (107), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 33/119 (27%), Positives = 54/119 (45%), Gaps = 8/119 (6%)

Query: 46  TYRFCADTELDVESVYLH------VDLEWFRV-IIHGVMDRKQHIDLLISSCLTEKWSFS 98
           +  F  D E      Y H      V L  F + ++  V  +K+ +D  I+  L   W+  
Sbjct: 2   SLEFGTDVETACRFAYTHDREDTDVQLPAFLIDLVSDVQAKKEELDKQITQHLKAGWTIE 61

Query: 99  RLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKE 157
           RL ++  ++LR GV E I     P  V ++E + +A DF      +FIN +L +   +E
Sbjct: 62  RLTLVERNLLRLGVFE-ITSFDTPQLVAVNEAIELAKDFSDQKSARFINGLLSQFVTEE 119


>gi|323488925|ref|ZP_08094162.1| N utilization substance protein B-like protein (NusB-like protein)
           [Planococcus donghaensis MPA1U2]
 gi|323397317|gb|EGA90126.1| N utilization substance protein B-like protein (NusB-like protein)
           [Planococcus donghaensis MPA1U2]
          Length = 129

 Score = 45.8 bits (107), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 37/146 (25%), Positives = 60/146 (41%), Gaps = 25/146 (17%)

Query: 15  RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHV----DLEWFR 70
           +R  AR  A+Q L+Q++                     TEL +     HV    +  ++ 
Sbjct: 2   KRHEAREKALQTLFQLE--------------------GTELTINEAMDHVMAGENDNFYD 41

Query: 71  VIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEY 130
           +++ G       ID  +   L E WS  RL  I  +ILR  + EL      P  V+++E 
Sbjct: 42  LLVQGTYTNMATIDEKLVDHL-ENWSIERLPKIERTILRMAIFELEYMEDAPARVVMNEA 100

Query: 131 VCIAHDFFYGDEPKFINAVLDKVSRK 156
           + +   F      +F+N VL K + K
Sbjct: 101 IELCKTFGDDKSSRFVNGVLSKFTDK 126


>gi|256372479|ref|YP_003110303.1| NusB antitermination factor [Acidimicrobium ferrooxidans DSM 10331]
 gi|256009063|gb|ACU54630.1| NusB antitermination factor [Acidimicrobium ferrooxidans DSM 10331]
          Length = 145

 Score = 45.8 bits (107), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 33/107 (30%), Positives = 52/107 (48%), Gaps = 3/107 (2%)

Query: 49  FCADTELDVESVYLHVDLEWF-RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSI 107
           + ADT+ +  +  L  D   F R  I G+ +R+  ID  +++ +   W   RL  I  +I
Sbjct: 24  YEADTKGEAPADLLRGDEPAFIRERIRGLTERRSEIDAQLTAHVI-GWQLERLAPIDRAI 82

Query: 108 LRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVS 154
           LR    EL+E  S P  V I+E V +A  +       F+N VL  ++
Sbjct: 83  LRLATAELLEA-STPPSVAIAEAVKLADRYSTERSAAFVNGVLASIA 128


>gi|237654565|ref|YP_002890879.1| transcription antitermination protein NusB [Thauera sp. MZ1T]
 gi|237625812|gb|ACR02502.1| NusB antitermination factor [Thauera sp. MZ1T]
          Length = 166

 Score = 45.8 bits (107), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 45/154 (29%), Positives = 70/154 (45%), Gaps = 19/154 (12%)

Query: 11  KLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTE-LDVESVYLHVDLEWF 69
           K++ RR  AR  A+Q +YQ  + G + T +    E+     +TE LD       +D E F
Sbjct: 21  KMARRR--ARELALQGVYQWLLSGNNATTVQRHLES-----ETENLD------KIDRELF 67

Query: 70  RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISE 129
             ++ G       +       L+     + L  I  +IL  G  EL      P  V+I+E
Sbjct: 68  VSLLRGATGAADELRGCFEPLLSR--PVAELSPIEHAILLLGTHELRHNLDTPYRVVINE 125

Query: 130 YVCIAHDFFYGDEPKFINAVLDKVS---RKEEIK 160
            + +A  +   D  KF+N VLDK+S   R EE++
Sbjct: 126 AIELAKGYGGTDGHKFVNGVLDKLSTRLRPEEVE 159


>gi|87308019|ref|ZP_01090161.1| probable N utilization substance protein B-like [Blastopirellula
           marina DSM 3645]
 gi|87289101|gb|EAQ80993.1| probable N utilization substance protein B-like [Blastopirellula
           marina DSM 3645]
          Length = 137

 Score = 45.8 bits (107), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 26/84 (30%), Positives = 45/84 (53%), Gaps = 2/84 (2%)

Query: 70  RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISE 129
           R ++ GV   ++ ID  I     E WS +R+ +   ++LR G  E++   + P  V I+E
Sbjct: 48  RSLLVGVRLHRKAIDAKIE-AFAENWSLARMAVTDRNVLRIGAFEILFSET-PDRVAINE 105

Query: 130 YVCIAHDFFYGDEPKFINAVLDKV 153
            V ++  F     P+F+N +LD+V
Sbjct: 106 AVELSKRFGSKHSPQFVNGLLDRV 129


>gi|88608227|ref|YP_506746.1| putative N utilization substance protein B [Neorickettsia sennetsu
           str. Miyayama]
 gi|88600396|gb|ABD45864.1| putative N utilization substance protein B [Neorickettsia sennetsu
           str. Miyayama]
          Length = 141

 Score = 45.8 bits (107), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 37/143 (25%), Positives = 65/143 (45%), Gaps = 8/143 (5%)

Query: 12  LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71
           +   + +ARL +++  Y         +E+IS     R     E+     Y   DLE    
Sbjct: 1   MPSEKRVARLLSIEVCYSSYFSDLPQSELIS-----RALELQEMPYMKRY---DLELLNS 52

Query: 72  IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
           I+   +   +    LI   L+E+W  +R+D +  S+LR  + EL         ++I+EYV
Sbjct: 53  ILDLCLANVEADTELIGRFLSEEWEINRIDNLKLSLLRVAISELRLSSVGQRNLVINEYV 112

Query: 132 CIAHDFFYGDEPKFINAVLDKVS 154
            +   F    E  F+NA+L+K++
Sbjct: 113 SLGGLFLSVKEVGFVNAILEKLA 135


>gi|46579608|ref|YP_010416.1| N utilization substance protein B [Desulfovibrio vulgaris str.
           Hildenborough]
 gi|120602904|ref|YP_967304.1| NusB antitermination factor [Desulfovibrio vulgaris DP4]
 gi|81566935|sp|Q72CT6|NUSB_DESVH RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|166215687|sp|A1VEL1|NUSB_DESVV RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|46449023|gb|AAS95675.1| N utilization substance protein B [Desulfovibrio vulgaris str.
           Hildenborough]
 gi|120563133|gb|ABM28877.1| NusB antitermination factor [Desulfovibrio vulgaris DP4]
 gi|311233412|gb|ADP86266.1| NusB antitermination factor [Desulfovibrio vulgaris RCH1]
          Length = 153

 Score = 45.8 bits (107), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 36/149 (24%), Positives = 66/149 (44%), Gaps = 8/149 (5%)

Query: 11  KLSHRRGIARLAAVQALYQIDIIGCSTTEIISE-YETYRFCADTELDVESVYLHVDLEWF 69
           K +  R  AR  A Q LY +     ++ + + E Y +    AD     +      +L   
Sbjct: 4   KGTPSRRAARALAFQILYGLGFSPAASVKQLREAYASSPDVADKGRSPQPEGFAWEL--- 60

Query: 70  RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISE 129
              I G+   + +ID +I    ++ W   R+  +  ++LR  V E++    VP +V I+E
Sbjct: 61  ---IEGIWTEQANIDEVIG-LFSQNWRIDRIGRVELTLLRIAVYEMLYRIDVPPKVAINE 116

Query: 130 YVCIAHDFFYGDEPKFINAVLDKVSRKEE 158
            + ++  F   +   FIN +LD  ++  E
Sbjct: 117 ALELSKQFGDANARGFINGILDAAAKALE 145


>gi|326317709|ref|YP_004235381.1| NusB antitermination factor [Acidovorax avenae subsp. avenae ATCC
           19860]
 gi|323374545|gb|ADX46814.1| NusB antitermination factor [Acidovorax avenae subsp. avenae ATCC
           19860]
          Length = 186

 Score = 45.8 bits (107), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 39/139 (28%), Positives = 65/139 (46%), Gaps = 13/139 (9%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           R  +R  A+QALYQ  I+G +    I       F  D      S +   D   +  ++HG
Sbjct: 39  RSRSRAFALQALYQ-HIVGRNEATAIDV-----FTRDL-----SGFHKADAAHYDALLHG 87

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
            ++  + +D LI+  L    +   +  I  + +  GV E   C  VP  V+I+E V +A 
Sbjct: 88  CIENAETLDALITPKLDR--TLEEISPIEHATMWIGVYEFQHCLDVPWRVVINECVELAK 145

Query: 136 DFFYGDEPKFINAVLDKVS 154
           +F   D  K++N VL+ ++
Sbjct: 146 EFGGTDGHKYVNGVLNGLA 164


>gi|254507845|ref|ZP_05119975.1| transcription antitermination factor NusB [Vibrio parahaemolyticus
           16]
 gi|323491732|ref|ZP_08096910.1| transcription antitermination protein NusB [Vibrio brasiliensis LMG
           20546]
 gi|323497970|ref|ZP_08102979.1| transcription antitermination protein NusB [Vibrio sinaloensis DSM
           21326]
 gi|219549218|gb|EED26213.1| transcription antitermination factor NusB [Vibrio parahaemolyticus
           16]
 gi|323314094|gb|EGA67180.1| transcription antitermination protein NusB [Vibrio brasiliensis LMG
           20546]
 gi|323317015|gb|EGA70017.1| transcription antitermination protein NusB [Vibrio sinaloensis DSM
           21326]
          Length = 155

 Score = 45.8 bits (107), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 27/91 (29%), Positives = 46/91 (50%), Gaps = 2/91 (2%)

Query: 64  VDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPV 123
            D+ +FR ++ GV+     +D  I            LDM+  ++LR  + E+     VP 
Sbjct: 61  TDVAYFRDLLTGVVLSHTELDSKIRPYTAR--PMQDLDMMELALLRLAMYEMTRREDVPY 118

Query: 124 EVIISEYVCIAHDFFYGDEPKFINAVLDKVS 154
           +V+I+E + +A  F   +  KF+N VLDK +
Sbjct: 119 KVVINEAIELAKVFAAEESHKFVNGVLDKAA 149


>gi|166710625|ref|ZP_02241832.1| transcription antitermination protein NusB [Xanthomonas oryzae pv.
           oryzicola BLS256]
          Length = 156

 Score = 45.8 bits (107), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 31/130 (23%), Positives = 57/130 (43%), Gaps = 13/130 (10%)

Query: 25  QALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHID 84
           QA+Y   I G    ++I+++             E  +   DL +F  ++ GV+  +  +D
Sbjct: 30  QAVYAWQISGGFAKQVIAQFAH-----------EQAHEVADLAYFENLVEGVLTNRAELD 78

Query: 85  LLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPK 144
             ++  L        +D I  ++LR    EL+    VP  V+I+E +  A  F       
Sbjct: 79  TALTPYLDR--GVEEVDAIERAVLRLAAYELLYRQDVPYRVLINEAIETAKRFGSEHGHT 136

Query: 145 FINAVLDKVS 154
           ++N VLD+ +
Sbjct: 137 YVNGVLDRAA 146


>gi|312883802|ref|ZP_07743521.1| transcription antitermination protein NusB [Vibrio caribbenthicus
           ATCC BAA-2122]
 gi|309368551|gb|EFP96084.1| transcription antitermination protein NusB [Vibrio caribbenthicus
           ATCC BAA-2122]
          Length = 155

 Score = 45.8 bits (107), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 27/91 (29%), Positives = 46/91 (50%), Gaps = 2/91 (2%)

Query: 64  VDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPV 123
            D+ +FR ++ GV+     +D  I            LDM+  ++LR  + E+     VP 
Sbjct: 61  TDVAYFRDLLTGVVLSHTELDSKIRPYTAR--PMQDLDMMELALLRLAMYEMTRREDVPY 118

Query: 124 EVIISEYVCIAHDFFYGDEPKFINAVLDKVS 154
           +V+I+E + +A  F   +  KF+N VLDK +
Sbjct: 119 KVVINEAIELAKVFAAEESHKFVNGVLDKAA 149


>gi|257413800|ref|ZP_04744265.2| transcription antitermination factor NusB [Roseburia intestinalis
           L1-82]
 gi|257202253|gb|EEV00538.1| transcription antitermination factor NusB [Roseburia intestinalis
           L1-82]
          Length = 146

 Score = 45.8 bits (107), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 22/81 (27%), Positives = 44/81 (54%), Gaps = 1/81 (1%)

Query: 73  IHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVC 132
           +  + ++ + ID  I+  ++E W   R+  +  +++R  V E++    VP +V I+E V 
Sbjct: 66  VEKISEKLEEIDAKINE-VSEGWKTGRMGKVDLTLIRLAVYEMLYEEDVPAKVAINEAVE 124

Query: 133 IAHDFFYGDEPKFINAVLDKV 153
           +A  +   + P F+N VL K+
Sbjct: 125 LAKQYGTDNSPSFVNGVLAKL 145


>gi|146329208|ref|YP_001209382.1| transcription antitermination factor NusB [Dichelobacter nodosus
           VCS1703A]
 gi|146232678|gb|ABQ13656.1| transcription antitermination factor NusB [Dichelobacter nodosus
           VCS1703A]
          Length = 145

 Score = 45.8 bits (107), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 37/146 (25%), Positives = 67/146 (45%), Gaps = 13/146 (8%)

Query: 15  RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74
           +R  AR   +Q LYQ  IIG    EI+ E +           +++    +D ++F     
Sbjct: 13  QRSQARRQLLQGLYQWQIIG-DDAEIVKENQM----------IDARAGEIDHDYFDAAWA 61

Query: 75  GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134
            +    + +D   +  +    + + LD +  +IL  G+ EL +   +   VII+E V +A
Sbjct: 62  YITTNTEQLDCCAADFIRR--NMATLDPVEHAILWIGIYELTQRIDIHQNVIINEAVELA 119

Query: 135 HDFFYGDEPKFINAVLDKVSRKEEIK 160
             F   D  KF+N VLD+ +++   +
Sbjct: 120 KQFGSDDGYKFVNGVLDQCAKRHRAR 145


>gi|326487822|dbj|BAK05583.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 546

 Score = 45.8 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 28/89 (31%), Positives = 48/89 (53%), Gaps = 1/89 (1%)

Query: 65  DLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVE 124
           D+    VI+ G +  K++ID LI S  +E+  FS ++ +L  ILR G  E+++  +VP  
Sbjct: 131 DIRLVTVIVAGTVRWKRYIDYLIMSLCSEEKVFSNMEPLLLQILRIGFYEILKL-NVPAY 189

Query: 125 VIISEYVCIAHDFFYGDEPKFINAVLDKV 153
            ++ E V +A           +NA+L K+
Sbjct: 190 AVVDENVRLAKVALRPGAGNMVNAILRKL 218


>gi|261253734|ref|ZP_05946307.1| transcription termination protein NusB [Vibrio orientalis CIP
           102891]
 gi|260937125|gb|EEX93114.1| transcription termination protein NusB [Vibrio orientalis CIP
           102891]
          Length = 155

 Score = 45.8 bits (107), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 27/91 (29%), Positives = 46/91 (50%), Gaps = 2/91 (2%)

Query: 64  VDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPV 123
            D+ +FR ++ GV+     +D  I            LDM+  ++LR  + E+     VP 
Sbjct: 61  TDVAYFRDLLTGVVLSHTELDSKIRPYTAR--PMQDLDMMELALLRLAMYEMTRREDVPY 118

Query: 124 EVIISEYVCIAHDFFYGDEPKFINAVLDKVS 154
           +V+I+E + +A  F   +  KF+N VLDK +
Sbjct: 119 KVVINEAIELAKVFAAEESHKFVNGVLDKAA 149


>gi|289578288|ref|YP_003476915.1| NusB antitermination factor [Thermoanaerobacter italicus Ab9]
 gi|297544568|ref|YP_003676870.1| NusB antitermination factor [Thermoanaerobacter mathranii subsp.
           mathranii str. A3]
 gi|289528001|gb|ADD02353.1| NusB antitermination factor [Thermoanaerobacter italicus Ab9]
 gi|296842343|gb|ADH60859.1| NusB antitermination factor [Thermoanaerobacter mathranii subsp.
           mathranii str. A3]
          Length = 140

 Score = 45.8 bits (107), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 37/141 (26%), Positives = 62/141 (43%), Gaps = 14/141 (9%)

Query: 15  RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74
            R  AR   V+ LYQ DI     ++I   +   +   D +            E+    + 
Sbjct: 2   NRTEAREWVVKMLYQYDISRFPISKIFDNFYKEKDPGDQK------------EYIENTVK 49

Query: 75  GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134
           G ++  + ID  I    ++ W+ +R+  I  +ILR  + E+I   ++PV + I+E V IA
Sbjct: 50  GAIEHLEEIDKEIEK-YSQNWALNRMPRIDLAILRCSIYEMI-YGNIPVNISINEAVEIA 107

Query: 135 HDFFYGDEPKFINAVLDKVSR 155
             +   D   FIN +L    R
Sbjct: 108 KKYSTEDSHVFINGLLGAFVR 128


>gi|257453620|ref|ZP_05618910.1| NusB antitermination factor [Enhydrobacter aerosaccus SK60]
 gi|257449078|gb|EEV24031.1| NusB antitermination factor [Enhydrobacter aerosaccus SK60]
          Length = 186

 Score = 45.8 bits (107), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 34/137 (24%), Positives = 64/137 (46%), Gaps = 13/137 (9%)

Query: 19  ARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMD 78
           AR   VQ LY+  + G  + EI +   +           E+    V L ++  ++  +++
Sbjct: 31  ARRFVVQGLYEWLLTGNPSHEIEAHTRS-----------ENAMHTVHLGYYHELLSKIIE 79

Query: 79  RKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFF 138
           +   +   I S L   W+  RLD +  ++L  G  E+ +   VP +V+I E + +   F 
Sbjct: 80  QSDDLIAYIDSLLNRPWT--RLDKVEQAVLLVGAYEMKQHLEVPYKVVIDEAIQLNTHFG 137

Query: 139 YGDEPKFINAVLDKVSR 155
             D  K I+ V+DK+++
Sbjct: 138 SSDGYKMIHVVMDKIAK 154


>gi|322387215|ref|ZP_08060825.1| N utilization substance protein B [Streptococcus infantis ATCC
           700779]
 gi|321141744|gb|EFX37239.1| N utilization substance protein B [Streptococcus infantis ATCC
           700779]
          Length = 140

 Score = 45.8 bits (107), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 25/86 (29%), Positives = 44/86 (51%), Gaps = 1/86 (1%)

Query: 72  IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
           ++ GV  +K+ +D  I+  L   W+  RL ++  ++LR GV E I     P  V ++E +
Sbjct: 55  LVSGVQAQKEELDKQITQHLKSGWTIERLTLVEKNLLRLGVFE-ITSFDTPQLVAVNEAI 113

Query: 132 CIAHDFFYGDEPKFINAVLDKVSRKE 157
            +A  F      +FIN +L +   +E
Sbjct: 114 ELAKSFSDQKSARFINGLLSQFVTEE 139


>gi|315453162|ref|YP_004073432.1| N utilization substance protein B-like protein [Helicobacter felis
           ATCC 49179]
 gi|315132214|emb|CBY82842.1| N utilization substance protein B homolog [Helicobacter felis ATCC
           49179]
          Length = 134

 Score = 45.8 bits (107), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 22/86 (25%), Positives = 50/86 (58%), Gaps = 2/86 (2%)

Query: 72  IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
           ++ G ++    +D  ++  L + W  +R+  +  +ILR G  E++   + PV V+I+E +
Sbjct: 49  LLEGTLEHLPSLDNALTPLLKD-WDLARIGSMERAILRLGAYEILHTPTNPV-VVINEAI 106

Query: 132 CIAHDFFYGDEPKFINAVLDKVSRKE 157
            ++ ++   + PK INA+LD + +++
Sbjct: 107 ELSKNYGEDNAPKLINAILDALCKQK 132


>gi|91216596|ref|ZP_01253562.1| putative N utilization substance protein [Psychroflexus torquis
           ATCC 700755]
 gi|91185390|gb|EAS71767.1| putative N utilization substance protein [Psychroflexus torquis
           ATCC 700755]
          Length = 302

 Score = 45.4 bits (106), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 25/82 (30%), Positives = 44/82 (53%), Gaps = 2/82 (2%)

Query: 87  ISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFI 146
           I+   T  W   R+  I   +++  + E ++  S+PV V I+EY+ +A ++       FI
Sbjct: 218 ITKNKTPNWDQDRIADIDSILIKMALCEFLKFPSIPVRVTINEYLELAKEYSTPKSSTFI 277

Query: 147 NAVLDKVSRKEEIKRSGCVSAI 168
           N VLD VS+  E + +G ++ I
Sbjct: 278 NGVLDTVSK--EYQTNGKINKI 297


>gi|309799755|ref|ZP_07693969.1| transcription antitermination factor NusB [Streptococcus infantis
           SK1302]
 gi|308116621|gb|EFO54083.1| transcription antitermination factor NusB [Streptococcus infantis
           SK1302]
          Length = 140

 Score = 45.4 bits (106), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 25/87 (28%), Positives = 45/87 (51%), Gaps = 1/87 (1%)

Query: 72  IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
           ++ GV  +K  +D  I+  L   W+ +RL ++  ++LR GV E I     P  V ++E +
Sbjct: 55  LVSGVQAKKDDLDKQITQHLKTGWTINRLTLVEKNLLRLGVFE-ITSFDTPQLVAVNEAI 113

Query: 132 CIAHDFFYGDEPKFINAVLDKVSRKEE 158
            +A  F      +FIN +L +   +E+
Sbjct: 114 ELAKSFSDQKSARFINGLLSQFVTEED 140


>gi|145588452|ref|YP_001155049.1| NusB antitermination factor [Polynucleobacter necessarius subsp.
           asymbioticus QLW-P1DMWA-1]
 gi|145046858|gb|ABP33485.1| NusB antitermination factor [Polynucleobacter necessarius subsp.
           asymbioticus QLW-P1DMWA-1]
          Length = 174

 Score = 45.4 bits (106), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 30/103 (29%), Positives = 52/103 (50%), Gaps = 2/103 (1%)

Query: 54  ELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVL 113
           +L  +  +    L+ F+ I  GV++R   ++ +I+  L      + L  +  + L  G  
Sbjct: 65  QLGEDPAFRRCQLDLFQGIFDGVLERTDELEAIITPALDR--PINELSPVEHAALLIGAY 122

Query: 114 ELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRK 156
           EL    SVP +V I+E V +A  F   D  K++N VLD +++K
Sbjct: 123 ELAIDLSVPYKVAINEAVELAKTFGGTDGHKYVNGVLDLLAQK 165


>gi|329119641|ref|ZP_08248322.1| transcription antitermination factor NusB [Neisseria bacilliformis
           ATCC BAA-1200]
 gi|327464238|gb|EGF10542.1| transcription antitermination factor NusB [Neisseria bacilliformis
           ATCC BAA-1200]
          Length = 142

 Score = 45.4 bits (106), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 43/155 (27%), Positives = 65/155 (41%), Gaps = 17/155 (10%)

Query: 10  LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF 69
           +K S RR  AR  AVQALYQ  + G S  ++    +  R  +D        Y   D E F
Sbjct: 1   MKTSPRR-RAREFAVQALYQCALNGASAVQVA---QNIREASD--------YPRADGELF 48

Query: 70  RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISE 129
             +  G  D        I   L        ++ +  +IL     EL      P  VII+E
Sbjct: 49  TALFFGAHDNGGEYMQRIRPLLDRDEK--DINPVERAILLMACHELAAMPETPYPVIINE 106

Query: 130 YVCIAHDFFYGDEPKFINAVLDKVS---RKEEIKR 161
            + +   +   D  KF+N +LD+++   R ++ KR
Sbjct: 107 AIEVTKTYGGTDSHKFVNGILDRLAAELRPDDPKR 141


>gi|291536362|emb|CBL09474.1| transcription antitermination factor NusB [Roseburia intestinalis
           M50/1]
 gi|291538768|emb|CBL11879.1| transcription antitermination factor NusB [Roseburia intestinalis
           XB6B4]
          Length = 137

 Score = 45.4 bits (106), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 22/81 (27%), Positives = 44/81 (54%), Gaps = 1/81 (1%)

Query: 73  IHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVC 132
           +  + ++ + ID  I+  ++E W   R+  +  +++R  V E++    VP +V I+E V 
Sbjct: 57  VEKISEKLEEIDAKINE-VSEGWKTGRMGKVDLTLIRLAVYEMLYEEDVPAKVAINEAVE 115

Query: 133 IAHDFFYGDEPKFINAVLDKV 153
           +A  +   + P F+N VL K+
Sbjct: 116 LAKQYGTDNSPSFVNGVLAKL 136


>gi|260775291|ref|ZP_05884188.1| transcription termination protein NusB [Vibrio coralliilyticus ATCC
           BAA-450]
 gi|260608472|gb|EEX34637.1| transcription termination protein NusB [Vibrio coralliilyticus ATCC
           BAA-450]
          Length = 155

 Score = 45.4 bits (106), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 27/91 (29%), Positives = 46/91 (50%), Gaps = 2/91 (2%)

Query: 64  VDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPV 123
            D+ +FR ++ GV+     +D  I            LDM+  ++LR  + E+     VP 
Sbjct: 61  TDVAYFRDLLTGVVLSHTELDSKIRPYTAR--PMQDLDMMELALLRLAMYEMTRREDVPY 118

Query: 124 EVIISEYVCIAHDFFYGDEPKFINAVLDKVS 154
           +V+I+E + +A  F   +  KF+N VLDK +
Sbjct: 119 KVVINEAIELAKVFAAEESHKFVNGVLDKAA 149


>gi|304382450|ref|ZP_07364948.1| NusB family protein [Prevotella marshii DSM 16973]
 gi|304336403|gb|EFM02641.1| NusB family protein [Prevotella marshii DSM 16973]
          Length = 329

 Score = 45.4 bits (106), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 26/87 (29%), Positives = 44/87 (50%), Gaps = 5/87 (5%)

Query: 69  FRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIIS 128
           FR  I    D+ QH      S  +  W FSRL  +   I++  + E++   ++P+ V I+
Sbjct: 215 FRATILNA-DQYQHY----MSETSRNWDFSRLAYMDVVIMQIAIAEMLTFPNIPISVTIN 269

Query: 129 EYVCIAHDFFYGDEPKFINAVLDKVSR 155
           EYV +A  +       +IN +LD ++R
Sbjct: 270 EYVELAKLYSTPKSGAYINGMLDTIAR 296


>gi|312868252|ref|ZP_07728452.1| transcription antitermination factor NusB [Streptococcus
           parasanguinis F0405]
 gi|311095997|gb|EFQ54241.1| transcription antitermination factor NusB [Streptococcus
           parasanguinis F0405]
          Length = 143

 Score = 45.4 bits (106), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 30/96 (31%), Positives = 48/96 (50%), Gaps = 2/96 (2%)

Query: 63  HVDLEWFRV-IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSV 121
            VDL  F + ++ GV   K  +D  I   L   W+  RL ++  +ILR G+ E+ E  + 
Sbjct: 49  EVDLPAFLMNLVTGVYQSKDQLDQQIGQHLKTGWTVERLTLVEKNILRLGIYEITEFDT- 107

Query: 122 PVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKE 157
           P  V ++E V +A  F      +F+N VL +   +E
Sbjct: 108 PQIVAVNEAVELAKAFSDETSSRFVNGVLSQFVTEE 143


>gi|297559856|ref|YP_003678830.1| NusB antitermination factor [Nocardiopsis dassonvillei subsp.
           dassonvillei DSM 43111]
 gi|296844304|gb|ADH66324.1| NusB antitermination factor [Nocardiopsis dassonvillei subsp.
           dassonvillei DSM 43111]
          Length = 137

 Score = 45.4 bits (106), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 22/82 (26%), Positives = 44/82 (53%), Gaps = 1/82 (1%)

Query: 72  IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
           +   V +R++ ID L+ +     W+  R+ ++  +ILR G  EL+    +P  V I+E V
Sbjct: 48  LARSVDERRERIDELLDTYAI-GWTLERMPVVDRNILRMGAYELLWADDIPDGVAIAEAV 106

Query: 132 CIAHDFFYGDEPKFINAVLDKV 153
            +A +    + P F++ +L ++
Sbjct: 107 GVAKELSTDESPNFVSGLLSRL 128


>gi|307566362|ref|ZP_07628801.1| transcription antitermination factor NusB [Prevotella amnii CRIS
           21A-A]
 gi|307344939|gb|EFN90337.1| transcription antitermination factor NusB [Prevotella amnii CRIS
           21A-A]
          Length = 313

 Score = 45.4 bits (106), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 25/90 (27%), Positives = 45/90 (50%), Gaps = 12/90 (13%)

Query: 78  DRKQHIDLLISSCL------------TEKWSFSRLDMILCSILRAGVLELIECHSVPVEV 125
           DRK  IDL  ++ +            +  W FSRL  +   I++  + E++   ++P+ V
Sbjct: 182 DRKFAIDLFRATIINAEVYQGYMSQASRNWDFSRLAYMDVVIMQIAIAEMVNFPNIPINV 241

Query: 126 IISEYVCIAHDFFYGDEPKFINAVLDKVSR 155
            I+EYV +A  +       +IN +LD ++R
Sbjct: 242 SINEYVNLAKLYSTPRSGGYINGMLDSIAR 271


>gi|163790822|ref|ZP_02185247.1| Sun protein [Carnobacterium sp. AT7]
 gi|159873890|gb|EDP67969.1| Sun protein [Carnobacterium sp. AT7]
          Length = 458

 Score = 45.4 bits (106), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 40/143 (27%), Positives = 64/143 (44%), Gaps = 18/143 (12%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISE--YETYRFCADTELDVESVYLHVDLEWFRVII 73
           +  +R  A+  L + D  G  +  +I+E   +     AD  L  E VY            
Sbjct: 13  KKTSRYLAMSILERTDKTGSYSNLLINEAIQKNKLSAADARLLTELVY------------ 60

Query: 74  HGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCI 133
            GV+ RK  +D  +SS L E     ++D+ + ++LR  + ++I    +PV  I+ E V +
Sbjct: 61  -GVLQRKLTLDFYLSSFLAED---KKIDIWVRNLLRLSIYQMIYLDKIPVHAILFEAVEV 116

Query: 134 AHDFFYGDEPKFINAVLDKVSRK 156
           A    +    KFIN VL    RK
Sbjct: 117 AKKKGHIGISKFINGVLRNADRK 139


>gi|120610904|ref|YP_970582.1| NusB antitermination factor [Acidovorax citrulli AAC00-1]
 gi|120589368|gb|ABM32808.1| NusB antitermination factor [Acidovorax citrulli AAC00-1]
          Length = 186

 Score = 45.4 bits (106), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 39/139 (28%), Positives = 64/139 (46%), Gaps = 13/139 (9%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           R  +R  A+QALYQ  I+G +    I       F  D      S +   D   +  ++HG
Sbjct: 39  RSRSRAFALQALYQ-HIVGRNEATAIDV-----FTRDL-----SGFHKADAAHYDALLHG 87

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
            ++    +D LI+  L    +   +  I  + +  GV E   C  VP  V+I+E V +A 
Sbjct: 88  CIENAGALDALIAPKLDR--TLEEISPIEHATMWIGVYEFQNCLDVPWRVVINECVELAK 145

Query: 136 DFFYGDEPKFINAVLDKVS 154
           +F   D  K++N VL+ ++
Sbjct: 146 EFGGTDGHKYVNGVLNGLA 164


>gi|57237437|ref|YP_178450.1| transcription antitermination protein NusB [Campylobacter jejuni
           RM1221]
 gi|86148965|ref|ZP_01067197.1| transcription antitermination factor NusB [Campylobacter jejuni
           subsp. jejuni CF93-6]
 gi|88597364|ref|ZP_01100599.1| transcription antitermination factor NusB [Campylobacter jejuni
           subsp. jejuni 84-25]
 gi|148926474|ref|ZP_01810157.1| transcription termination protein [Campylobacter jejuni subsp.
           jejuni CG8486]
 gi|205355968|ref|ZP_03222736.1| transcription termination protein [Campylobacter jejuni subsp.
           jejuni CG8421]
 gi|218562040|ref|YP_002343819.1| transcription antitermination protein NusB [Campylobacter jejuni
           subsp. jejuni NCTC 11168]
 gi|22095973|sp|Q9PIC0|NUSB_CAMJE RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|73621331|sp|Q5HW85|NUSB_CAMJR RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|57166241|gb|AAW35020.1| transcription antitermination factor NusB [Campylobacter jejuni
           RM1221]
 gi|85840323|gb|EAQ57580.1| transcription antitermination factor NusB [Campylobacter jejuni
           subsp. jejuni CF93-6]
 gi|88190425|gb|EAQ94399.1| transcription antitermination factor NusB [Campylobacter jejuni
           subsp. jejuni 84-25]
 gi|112359746|emb|CAL34532.1| transcription termination protein [Campylobacter jejuni subsp.
           jejuni NCTC 11168]
 gi|145844637|gb|EDK21743.1| transcription termination protein [Campylobacter jejuni subsp.
           jejuni CG8486]
 gi|205346092|gb|EDZ32727.1| transcription termination protein [Campylobacter jejuni subsp.
           jejuni CG8421]
 gi|284925653|gb|ADC28005.1| transcription antitermination protein NusB [Campylobacter jejuni
           subsp. jejuni IA3902]
 gi|315057805|gb|ADT72134.1| Transcription termination protein NusB [Campylobacter jejuni subsp.
           jejuni S3]
 gi|315926706|gb|EFV06085.1| transcription antitermination factor NusB [Campylobacter jejuni
           subsp. jejuni DFVF1099]
          Length = 132

 Score = 45.4 bits (106), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 25/78 (32%), Positives = 44/78 (56%), Gaps = 2/78 (2%)

Query: 74  HGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCI 133
           +G++D   +ID  ++S L +    + L  +  +ILR G  EL+   + P  ++I+E + +
Sbjct: 50  NGILDNLNNIDETLNSFLNDNQ-ITALGHVERAILRLGAYELLFTDT-PSAIVINEAIEL 107

Query: 134 AHDFFYGDEPKFINAVLD 151
           A +    + PKFIN VLD
Sbjct: 108 AKELANDNSPKFINGVLD 125


>gi|308272930|emb|CBX29534.1| N utilization substance protein B homolog [uncultured
           Desulfobacterium sp.]
          Length = 90

 Score = 45.4 bits (106), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 24/77 (31%), Positives = 38/77 (49%), Gaps = 1/77 (1%)

Query: 77  MDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHD 136
           M     ID +I    +  W  SR+  +  +I+R  V EL+ C  +P +V I+E + I   
Sbjct: 1   MSSAPEIDGIIER-FSSNWKISRMSCVDRNIMRIAVFELVWCDDIPCKVSINEAIDIGKK 59

Query: 137 FFYGDEPKFINAVLDKV 153
           +   +   FIN +LD V
Sbjct: 60  YGTDESGPFINGILDSV 76


>gi|239627505|ref|ZP_04670536.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA]
 gi|239517651|gb|EEQ57517.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA]
          Length = 149

 Score = 45.4 bits (106), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 23/86 (26%), Positives = 43/86 (50%), Gaps = 1/86 (1%)

Query: 65  DLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVE 124
           D E+ +     ++D+   ID  ++      W   R+  +  +ILR  + E++   ++P +
Sbjct: 60  DSEYLQARTVNIIDKIPEIDAKLNEVAA-GWKTKRMGKVELTILRLALFEMLYDENIPEK 118

Query: 125 VIISEYVCIAHDFFYGDEPKFINAVL 150
           V I+E V +A  F   D P F+N +L
Sbjct: 119 VSINEAVELAKKFGGNDSPAFVNGIL 144


>gi|226226881|ref|YP_002760987.1| antitermination protein NusB [Gemmatimonas aurantiaca T-27]
 gi|226090072|dbj|BAH38517.1| antitermination protein NusB [Gemmatimonas aurantiaca T-27]
          Length = 157

 Score = 45.4 bits (106), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 27/85 (31%), Positives = 41/85 (48%), Gaps = 2/85 (2%)

Query: 72  IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
           +I  V DR   +D  +   +T  W   RL  I  S+LR    EL      PV+V++ E V
Sbjct: 71  LIATVADRGAVLDAALVE-VTANWRLERLGAIERSVLRLAAAELAR-EETPVKVVLQEAV 128

Query: 132 CIAHDFFYGDEPKFINAVLDKVSRK 156
            +A  +      +F+N VLD  +R+
Sbjct: 129 HLAERYGTERSARFVNGVLDAYARR 153


>gi|307710564|ref|ZP_07646999.1| transcription antitermination factor NusB [Streptococcus mitis
           SK564]
 gi|307618672|gb|EFN97813.1| transcription antitermination factor NusB [Streptococcus mitis
           SK564]
          Length = 141

 Score = 45.1 bits (105), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 23/86 (26%), Positives = 45/86 (52%), Gaps = 1/86 (1%)

Query: 72  IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
           ++ G+  +K+ +D  I+  L   W+  RL ++  ++LR G+ E I     P  V ++E +
Sbjct: 55  LVSGIQAQKEELDKQINQHLKSGWTVERLTLVEKNLLRLGIFE-ITSFDTPQLVAVNEAI 113

Query: 132 CIAHDFFYGDEPKFINAVLDKVSRKE 157
            +A +F      +FIN +L +   +E
Sbjct: 114 ELAKNFSDQKSARFINGLLSQFVTEE 139


>gi|160947152|ref|ZP_02094319.1| hypothetical protein PEPMIC_01084 [Parvimonas micra ATCC 33270]
 gi|158446286|gb|EDP23281.1| hypothetical protein PEPMIC_01084 [Parvimonas micra ATCC 33270]
          Length = 134

 Score = 45.1 bits (105), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 30/108 (27%), Positives = 54/108 (50%), Gaps = 5/108 (4%)

Query: 56  DVESVYLHVDL-----EWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRA 110
           ++ES   + DL     ++ R     ++D   +ID +I   L   W+++R+  I  +ILR 
Sbjct: 27  EIESFIEYFDLPSSEVKYIRKNCKSIIDNLDNIDNIIKENLEGCWNYNRIAKIDLAILRV 86

Query: 111 GVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEE 158
            V E+     +P  V I+E + IA+ +      KFIN +L  + R ++
Sbjct: 87  AVNEIYYLDDIPESVAINEAIEIANKYSTDASYKFINGILGTIVRAKK 134


>gi|261380112|ref|ZP_05984685.1| transcription antitermination factor NusB [Neisseria subflava
           NJ9703]
 gi|284797333|gb|EFC52680.1| transcription antitermination factor NusB [Neisseria subflava
           NJ9703]
          Length = 142

 Score = 45.1 bits (105), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 50/163 (30%), Positives = 70/163 (42%), Gaps = 30/163 (18%)

Query: 10  LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF 69
           +K   RR  AR  AVQA+YQ  I   +  EI             EL   S   ++D E F
Sbjct: 1   MKSPRRR--ARELAVQAIYQAGINKTAAPEIAKNIR--------EL---SQAPNMDEELF 47

Query: 70  RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSV------PV 123
             +  G     +     IS  L       R +  L  I RA VL L+ CH +      P 
Sbjct: 48  NKLFFGAQTHAEEYMEKISPLL------DRDEKDLSPIERA-VL-LVACHELSTMPETPY 99

Query: 124 EVIISEYVCIAHDFFYGDEPKFINAVLDKVS---RKEEIKRSG 163
            VII+E + +   F   D  KF+N +LD+++   R +E +R G
Sbjct: 100 PVIINEAIEVTKTFGGTDGHKFVNGILDQLASRIRPDEPRRKG 142


>gi|167837551|ref|ZP_02464434.1| transcription antitermination protein NusB [Burkholderia
           thailandensis MSMB43]
          Length = 145

 Score = 45.1 bits (105), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 42/147 (28%), Positives = 63/147 (42%), Gaps = 14/147 (9%)

Query: 10  LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF 69
           +K S RR  +R  A Q LYQ  +   +  EI           D +L     Y   D    
Sbjct: 1   MKKSARRQ-SRELATQGLYQWLLSNAAPGEI-----------DAQLRGALGYDKADKTLL 48

Query: 70  RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISE 129
             I+HGV+  ++H  L  +   +      +L  +  ++L     EL      P  VII+E
Sbjct: 49  DTILHGVI--REHATLAEAISPSLDRPIDQLSPVERAVLLIATYELTHQIETPYRVIINE 106

Query: 130 YVCIAHDFFYGDEPKFINAVLDKVSRK 156
            V +A  F   D  K++N VLDK++ K
Sbjct: 107 AVELAKTFGGSDGYKYVNGVLDKLAVK 133


>gi|302345746|ref|YP_003814099.1| transcription antitermination factor NusB [Prevotella
           melaninogenica ATCC 25845]
 gi|302149617|gb|ADK95879.1| transcription antitermination factor NusB [Prevotella
           melaninogenica ATCC 25845]
          Length = 333

 Score = 45.1 bits (105), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 26/90 (28%), Positives = 47/90 (52%), Gaps = 5/90 (5%)

Query: 66  LEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEV 125
           L+ FR  I    D ++++     S  +  W FSRL  +   I++  + E++   ++PV V
Sbjct: 187 LKLFRSTILNADDYQRYM-----SESSRNWDFSRLAYMDVVIMQIAIAEMLTFPNIPVTV 241

Query: 126 IISEYVCIAHDFFYGDEPKFINAVLDKVSR 155
            I+EYV +A  +       +IN +LD ++R
Sbjct: 242 TINEYVDLAKLYSTPRSGGYINGMLDTIAR 271


>gi|167720799|ref|ZP_02404035.1| transcription antitermination protein NusB [Burkholderia
           pseudomallei DM98]
          Length = 145

 Score = 45.1 bits (105), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 42/147 (28%), Positives = 63/147 (42%), Gaps = 14/147 (9%)

Query: 10  LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF 69
           +K S RR  +R  A Q LYQ  +   +  EI           D +L     Y   D    
Sbjct: 1   MKKSARRQ-SRELATQGLYQWLLSNAAPGEI-----------DAQLRGALGYDKADKTLL 48

Query: 70  RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISE 129
             I+HGV+  ++H  L  +   +      +L  +  ++L     EL      P  VII+E
Sbjct: 49  DTILHGVI--REHATLAEAISPSLDRPIEQLSPVERAVLLIATYELTHQIETPYRVIINE 106

Query: 130 YVCIAHDFFYGDEPKFINAVLDKVSRK 156
            V +A  F   D  K++N VLDK++ K
Sbjct: 107 AVELAKTFGGSDGYKYVNGVLDKLAVK 133


>gi|53720238|ref|YP_109224.1| transcription antitermination protein NusB [Burkholderia
           pseudomallei K96243]
 gi|53725935|ref|YP_103717.1| transcription antitermination protein NusB [Burkholderia mallei
           ATCC 23344]
 gi|67643981|ref|ZP_00442724.1| transcription antitermination factor NusB [Burkholderia mallei GB8
           horse 4]
 gi|83718415|ref|YP_442074.1| transcription antitermination protein NusB [Burkholderia
           thailandensis E264]
 gi|121599031|ref|YP_992107.1| transcription antitermination protein NusB [Burkholderia mallei
           SAVP1]
 gi|124385249|ref|YP_001028552.1| transcription antitermination protein NusB [Burkholderia mallei
           NCTC 10229]
 gi|126438627|ref|YP_001060031.1| transcription antitermination protein NusB [Burkholderia
           pseudomallei 668]
 gi|126448499|ref|YP_001081550.1| transcription antitermination protein NusB [Burkholderia mallei
           NCTC 10247]
 gi|126452933|ref|YP_001067310.1| transcription antitermination protein NusB [Burkholderia
           pseudomallei 1106a]
 gi|134280178|ref|ZP_01766889.1| transcription antitermination factor NusB [Burkholderia
           pseudomallei 305]
 gi|166998350|ref|ZP_02264210.1| transcription antitermination factor NusB [Burkholderia mallei
           PRL-20]
 gi|167580929|ref|ZP_02373803.1| transcription antitermination protein NusB [Burkholderia
           thailandensis TXDOH]
 gi|167619020|ref|ZP_02387651.1| transcription antitermination protein NusB [Burkholderia
           thailandensis Bt4]
 gi|167739782|ref|ZP_02412556.1| transcription antitermination protein NusB [Burkholderia
           pseudomallei 14]
 gi|167817004|ref|ZP_02448684.1| transcription antitermination protein NusB [Burkholderia
           pseudomallei 91]
 gi|167825416|ref|ZP_02456887.1| transcription antitermination protein NusB [Burkholderia
           pseudomallei 9]
 gi|167846905|ref|ZP_02472413.1| transcription antitermination protein NusB [Burkholderia
           pseudomallei B7210]
 gi|167895484|ref|ZP_02482886.1| transcription antitermination protein NusB [Burkholderia
           pseudomallei 7894]
 gi|167903866|ref|ZP_02491071.1| transcription antitermination protein NusB [Burkholderia
           pseudomallei NCTC 13177]
 gi|167912133|ref|ZP_02499224.1| transcription antitermination protein NusB [Burkholderia
           pseudomallei 112]
 gi|167920107|ref|ZP_02507198.1| transcription antitermination protein NusB [Burkholderia
           pseudomallei BCC215]
 gi|217420428|ref|ZP_03451933.1| transcription antitermination factor NusB [Burkholderia
           pseudomallei 576]
 gi|226193837|ref|ZP_03789439.1| transcription antitermination factor NusB [Burkholderia
           pseudomallei Pakistan 9]
 gi|237813433|ref|YP_002897884.1| transcription antitermination factor NusB [Burkholderia
           pseudomallei MSHR346]
 gi|242315882|ref|ZP_04814898.1| transcription antitermination factor NusB [Burkholderia
           pseudomallei 1106b]
 gi|254175420|ref|ZP_04882080.1| transcription antitermination factor NusB [Burkholderia mallei ATCC
           10399]
 gi|254191824|ref|ZP_04898327.1| transcription antitermination factor NusB [Burkholderia
           pseudomallei Pasteur 52237]
 gi|254196083|ref|ZP_04902508.1| transcription antitermination factor NusB [Burkholderia
           pseudomallei S13]
 gi|254202417|ref|ZP_04908780.1| transcription antitermination factor NusB [Burkholderia mallei FMH]
 gi|254207748|ref|ZP_04914098.1| transcription antitermination factor NusB [Burkholderia mallei JHU]
 gi|254261365|ref|ZP_04952419.1| transcription antitermination factor NusB [Burkholderia
           pseudomallei 1710a]
 gi|254298898|ref|ZP_04966348.1| transcription antitermination factor NusB [Burkholderia
           pseudomallei 406e]
 gi|254356350|ref|ZP_04972626.1| transcription antitermination factor NusB [Burkholderia mallei
           2002721280]
 gi|257138259|ref|ZP_05586521.1| transcription antitermination protein NusB [Burkholderia
           thailandensis E264]
 gi|81604460|sp|Q62HV3|NUSB_BURMA RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|81607761|sp|Q63RP4|NUSB_BURPS RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|119372283|sp|Q2SYC5|NUSB_BURTA RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|166215667|sp|A3MMR4|NUSB_BURM7 RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|166215668|sp|A2S9D3|NUSB_BURM9 RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|166215669|sp|A1V1K4|NUSB_BURMS RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|166215670|sp|A3NY89|NUSB_BURP0 RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|166215671|sp|A3NCG0|NUSB_BURP6 RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|52210652|emb|CAH36636.1| probable N utilization substance protein B [Burkholderia
           pseudomallei K96243]
 gi|52429358|gb|AAU49951.1| N utilization substance protein B [Burkholderia mallei ATCC 23344]
 gi|83652240|gb|ABC36303.1| transcription antitermination factor NusB [Burkholderia
           thailandensis E264]
 gi|121227841|gb|ABM50359.1| transcription antitermination factor NusB [Burkholderia mallei
           SAVP1]
 gi|124293269|gb|ABN02538.1| N utilization substance protein B [Burkholderia mallei NCTC 10229]
 gi|126218120|gb|ABN81626.1| transcription antitermination factor NusB [Burkholderia
           pseudomallei 668]
 gi|126226575|gb|ABN90115.1| transcription antitermination factor NusB [Burkholderia
           pseudomallei 1106a]
 gi|126241369|gb|ABO04462.1| transcription antitermination factor NusB [Burkholderia mallei NCTC
           10247]
 gi|134248185|gb|EBA48268.1| transcription antitermination factor NusB [Burkholderia
           pseudomallei 305]
 gi|147746664|gb|EDK53741.1| transcription antitermination factor NusB [Burkholderia mallei FMH]
 gi|147751642|gb|EDK58709.1| transcription antitermination factor NusB [Burkholderia mallei JHU]
 gi|148025347|gb|EDK83501.1| transcription antitermination factor NusB [Burkholderia mallei
           2002721280]
 gi|157809075|gb|EDO86245.1| transcription antitermination factor NusB [Burkholderia
           pseudomallei 406e]
 gi|157939495|gb|EDO95165.1| transcription antitermination factor NusB [Burkholderia
           pseudomallei Pasteur 52237]
 gi|160696464|gb|EDP86434.1| transcription antitermination factor NusB [Burkholderia mallei ATCC
           10399]
 gi|169652827|gb|EDS85520.1| transcription antitermination factor NusB [Burkholderia
           pseudomallei S13]
 gi|217395840|gb|EEC35857.1| transcription antitermination factor NusB [Burkholderia
           pseudomallei 576]
 gi|225934142|gb|EEH30127.1| transcription antitermination factor NusB [Burkholderia
           pseudomallei Pakistan 9]
 gi|237505806|gb|ACQ98124.1| transcription antitermination factor NusB [Burkholderia
           pseudomallei MSHR346]
 gi|238525458|gb|EEP88886.1| transcription antitermination factor NusB [Burkholderia mallei GB8
           horse 4]
 gi|242139121|gb|EES25523.1| transcription antitermination factor NusB [Burkholderia
           pseudomallei 1106b]
 gi|243065419|gb|EES47605.1| transcription antitermination factor NusB [Burkholderia mallei
           PRL-20]
 gi|254220054|gb|EET09438.1| transcription antitermination factor NusB [Burkholderia
           pseudomallei 1710a]
          Length = 145

 Score = 45.1 bits (105), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 42/147 (28%), Positives = 63/147 (42%), Gaps = 14/147 (9%)

Query: 10  LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF 69
           +K S RR  +R  A Q LYQ  +   +  EI           D +L     Y   D    
Sbjct: 1   MKKSARRQ-SRELATQGLYQWLLSNAAPGEI-----------DAQLRGALGYDKADKTLL 48

Query: 70  RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISE 129
             I+HGV+  ++H  L  +   +      +L  +  ++L     EL      P  VII+E
Sbjct: 49  DTILHGVI--REHATLAEAISPSLDRPIDQLSPVERAVLLIATYELTHQIETPYRVIINE 106

Query: 130 YVCIAHDFFYGDEPKFINAVLDKVSRK 156
            V +A  F   D  K++N VLDK++ K
Sbjct: 107 AVELAKTFGGSDGYKYVNGVLDKLAVK 133


>gi|239905097|ref|YP_002951836.1| N utilization substance protein B homolog [Desulfovibrio magneticus
           RS-1]
 gi|239794961|dbj|BAH73950.1| N utilization substance protein B homolog [Desulfovibrio magneticus
           RS-1]
          Length = 159

 Score = 45.1 bits (105), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 44/157 (28%), Positives = 72/157 (45%), Gaps = 13/157 (8%)

Query: 1   MTIQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESV 60
           MT  D+KK + +S R+  AR  A + LY     G S      E    R       DV   
Sbjct: 1   MTESDDKKPI-VSRRK--ARKQAFEFLY-----GLSFEPAADERSLLRLFKRCPHDVAEG 52

Query: 61  YLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHS 120
                 E+   ++ GV   ++ ID  I    ++ W  SR+  +  +ILR  V E++    
Sbjct: 53  EDDAGHEFAWELVLGVWRNQRDIDATIVR-FSKNWKISRIAKVELTILRLAVHEILSRPD 111

Query: 121 VPVEVIISEYVCIAHDFFYGDEP--KFINAVLDKVSR 155
           +P+ V ++E + ++    YGDE    FIN +LD +++
Sbjct: 112 IPLRVSLNEAIELSKR--YGDENSRNFINGILDALAK 146


>gi|319639180|ref|ZP_07993931.1| N utilization substance protein B [Neisseria mucosa C102]
 gi|317399364|gb|EFV80034.1| N utilization substance protein B [Neisseria mucosa C102]
          Length = 142

 Score = 45.1 bits (105), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 50/163 (30%), Positives = 70/163 (42%), Gaps = 30/163 (18%)

Query: 10  LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF 69
           +K   RR  AR  AVQA+YQ  I   +  EI             EL   S   ++D E F
Sbjct: 1   MKSPRRR--ARELAVQAIYQAGINKTAAPEIAKNIH--------ELSQSS---NMDEELF 47

Query: 70  RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSV------PV 123
             +  G     +     IS  L       R +  L  I RA VL L+ CH +      P 
Sbjct: 48  NKLFFGAQTHAEEYMEKISPLL------DRDEKDLSPIERA-VL-LVACHELSTMPETPY 99

Query: 124 EVIISEYVCIAHDFFYGDEPKFINAVLDKVS---RKEEIKRSG 163
            VII+E + +   F   D  KF+N +LD+++   R +E +R G
Sbjct: 100 PVIINEAIEVTKTFGGTDGHKFVNGILDQLASRIRPDEPRRKG 142


>gi|121611696|ref|YP_999503.1| NusB antitermination factor [Verminephrobacter eiseniae EF01-2]
 gi|121556336|gb|ABM60485.1| NusB antitermination factor [Verminephrobacter eiseniae EF01-2]
          Length = 176

 Score = 45.1 bits (105), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 41/145 (28%), Positives = 67/145 (46%), Gaps = 21/145 (14%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           R  AR  A+QALYQ  ++G +    I E+   R  A         +   D   ++ ++HG
Sbjct: 34  RSRAREFALQALYQ-HLVGGNDAADIDEFT--RGLAG--------FHKADAAHYQTLLHG 82

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRA----GVLELIECHSVPVEVIISEYV 131
            +     ID LI   L       R  + +  I RA    GV E   C  VP  V+++E +
Sbjct: 83  CIGAAADIDALIVPLL------DRQLIAISPIERATMWIGVYEFQHCPDVPWRVVLNECI 136

Query: 132 CIAHDFFYGDEPKFINAVLDKVSRK 156
            +A +F   D  K++NA+L+ ++ +
Sbjct: 137 ELAKEFGGTDGHKYVNAMLNALAPR 161


>gi|319946361|ref|ZP_08020599.1| N utilization substance protein B [Streptococcus australis ATCC
           700641]
 gi|319747514|gb|EFV99769.1| N utilization substance protein B [Streptococcus australis ATCC
           700641]
          Length = 142

 Score = 45.1 bits (105), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 41/149 (27%), Positives = 67/149 (44%), Gaps = 20/149 (13%)

Query: 9   DLKLSHRRGIARLAAVQAL----YQIDII-GCSTTEIISEYETYRFCADTELDVESVYLH 63
           D+    RR + R  A QAL    Y+ D++  C       + ET     D E+++ +  L+
Sbjct: 3   DILFESRRDL-RERAFQALMSLEYEGDVVEACRFAFTHDKEET-----DQEVEIPAFLLN 56

Query: 64  VDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPV 123
                   ++ GV   K  +D  I+  L   W+  RL ++  +ILR GV E I     P 
Sbjct: 57  --------LVSGVRQSKDELDKQIAQHLKTGWTVERLTLVEKNILRLGVFE-ITSFDTPQ 107

Query: 124 EVIISEYVCIAHDFFYGDEPKFINAVLDK 152
            V ++E + +A  F      +F+N VL +
Sbjct: 108 LVAVNEAIELAKTFSDEKSARFVNGVLSQ 136


>gi|259046624|ref|ZP_05737025.1| N utilization substance protein B [Granulicatella adiacens ATCC
           49175]
 gi|259036789|gb|EEW38044.1| N utilization substance protein B [Granulicatella adiacens ATCC
           49175]
          Length = 153

 Score = 45.1 bits (105), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 43/153 (28%), Positives = 73/153 (47%), Gaps = 15/153 (9%)

Query: 6   NKKDLKLSHRRGIARLAAVQALYQIDII-------GCSTTEIISEYETYRFCADTELDVE 58
           ++K LK   RR + R+ A+QALYQ+D+          S     SE   Y   A TE D+ 
Sbjct: 2   SRKPLK---RRAL-RVLAIQALYQLDMTPEMHIVDALSLALECSEDSPYSSDAITEEDL- 56

Query: 59  SVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIEC 118
            +    ++ +   ++ GV +  + ID LI    +++W  +R+  +   I+R  + E+   
Sbjct: 57  -INEVPEIAYSIALVRGVQNNLEKIDGLIEKH-SKRWKLNRIVRLDLIIMRVAIFEMTSP 114

Query: 119 H-SVPVEVIISEYVCIAHDFFYGDEPKFINAVL 150
              VP  V ++E + IA  +      KFIN +L
Sbjct: 115 ELEVPQTVALNEAIEIAKTYSDEKSAKFINGIL 147


>gi|313891837|ref|ZP_07825442.1| transcription antitermination factor NusB [Dialister
           microaerophilus UPII 345-E]
 gi|313119831|gb|EFR43018.1| transcription antitermination factor NusB [Dialister
           microaerophilus UPII 345-E]
          Length = 133

 Score = 45.1 bits (105), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 39/142 (27%), Positives = 72/142 (50%), Gaps = 17/142 (11%)

Query: 15  RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74
           +R  +R  A++ LY  ++     TE I+  E Y+  +D+             ++   +I+
Sbjct: 2   KRRYSREYALEVLYANEL--NPQTEKINS-EIYKKLSDS-----------GKQFAESLIN 47

Query: 75  GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVE--VIISEYVC 132
            V +  + IDLLI   + +KWS ++L+++  +ILR  + E++       E  VI +E + 
Sbjct: 48  SVRENNEEIDLLIKKHI-KKWSINQLNVVDKNILRIAIAEMLFLKDEKQEKNVIFNEAIE 106

Query: 133 IAHDFFYGDEPKFINAVLDKVS 154
           IA  +   +  KFIN +L+ VS
Sbjct: 107 IAKIYGGKNSFKFINGILESVS 128


>gi|329121106|ref|ZP_08249737.1| transcription antitermination factor NusB [Dialister micraerophilus
           DSM 19965]
 gi|327471268|gb|EGF16722.1| transcription antitermination factor NusB [Dialister micraerophilus
           DSM 19965]
          Length = 136

 Score = 45.1 bits (105), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 39/142 (27%), Positives = 72/142 (50%), Gaps = 17/142 (11%)

Query: 15  RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74
           +R  +R  A++ LY  ++     TE I+  E Y+  +D+             ++   +I+
Sbjct: 5   KRRYSREYALEVLYANEL--NPQTEKINS-EIYKKLSDS-----------GKQFAESLIN 50

Query: 75  GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVE--VIISEYVC 132
            V +  + IDLLI   + +KWS ++L+++  +ILR  + E++       E  VI +E + 
Sbjct: 51  SVRENNEEIDLLIKKHI-KKWSINQLNVVDKNILRIAIAEMLFLKDEKQEKNVIFNEAIE 109

Query: 133 IAHDFFYGDEPKFINAVLDKVS 154
           IA  +   +  KFIN +L+ VS
Sbjct: 110 IAKIYGGKNSFKFINGILESVS 131


>gi|288803706|ref|ZP_06409135.1| NusB family protein [Prevotella melaninogenica D18]
 gi|288333795|gb|EFC72241.1| NusB family protein [Prevotella melaninogenica D18]
          Length = 297

 Score = 45.1 bits (105), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 26/90 (28%), Positives = 47/90 (52%), Gaps = 5/90 (5%)

Query: 66  LEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEV 125
           L+ FR  I    D ++++     S  +  W FSRL  +   I++  + E++   ++PV V
Sbjct: 151 LKLFRSTILNADDYQRYM-----SESSRNWDFSRLAYMDVVIMQIAIAEMLTFPNIPVTV 205

Query: 126 IISEYVCIAHDFFYGDEPKFINAVLDKVSR 155
            I+EYV +A  +       +IN +LD ++R
Sbjct: 206 TINEYVDLAKLYSTPRSGGYINGMLDTIAR 235


>gi|227515668|ref|ZP_03945717.1| transcription antitermination protein NusB [Lactobacillus fermentum
           ATCC 14931]
 gi|260663543|ref|ZP_05864433.1| transcription antitermination factor NusB [Lactobacillus fermentum
           28-3-CHN]
 gi|227085971|gb|EEI21283.1| transcription antitermination protein NusB [Lactobacillus fermentum
           ATCC 14931]
 gi|260552084|gb|EEX25137.1| transcription antitermination factor NusB [Lactobacillus fermentum
           28-3-CHN]
          Length = 139

 Score = 45.1 bits (105), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 33/116 (28%), Positives = 49/116 (42%), Gaps = 8/116 (6%)

Query: 47  YRFCADTELDVESVY-----LHVDLE---WFRVIIHGVMDRKQHIDLLISSCLTEKWSFS 98
           +   +D E+D E +Y     L    E   +   ++ GV + +   D  I   L   WS S
Sbjct: 17  FAMASDPEVDREQLYKELLPLAPQEEVPAYLEELVTGVSEHQAEFDQEIEGSLAAGWSLS 76

Query: 99  RLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVS 154
           R++     ILR  + E+     VPV V I E + +   F      KFIN VL  + 
Sbjct: 77  RVEKPNLIILRLALYEMKYVDDVPVAVAIDEALEMTKKFSDDKSRKFINGVLGHIG 132


>gi|304373104|ref|YP_003856313.1| Transcription termination factor [Mycoplasma hyorhinis HUB-1]
 gi|304309295|gb|ADM21775.1| Transcription termination factor [Mycoplasma hyorhinis HUB-1]
 gi|330723272|gb|AEC45642.1| Transcription termination factor [Mycoplasma hyorhinis MCLD]
          Length = 152

 Score = 45.1 bits (105), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 48/173 (27%), Positives = 82/173 (47%), Gaps = 26/173 (15%)

Query: 1   MTIQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESV 60
           MT  +NKK    S RR I R+  +  LY               YE +    D +++   +
Sbjct: 1   MTQTENKK-YPFSKRR-IHRMEIISLLYS--------------YELF----DNKINTNEI 40

Query: 61  YLHVDLEWFRVIIHGVMDRKQHI-DLLISSCLTEKWSFSRLDMILCSILRAGVLELIECH 119
           + + DL   ++ I   +++K  I   LI + L   WS++R+  ++ +IL  G  EL+   
Sbjct: 41  FKNYDLTKEQIKILEAIEKKYEIFQKLIINFLGSNWSWNRILPLVRAILLLGSFELLVND 100

Query: 120 SVPVEVIISEYVCIAHDFFY--GDEPKFINAVLDKVSRKEEIKRSGCVSAITQ 170
           +   +V+I+E V +  D+      E KF+NAVLDK+++  E +        TQ
Sbjct: 101 N---KVVINEMVQMIKDYTLESDKEYKFVNAVLDKINQFYEQENLKVYKKTTQ 150


>gi|171059618|ref|YP_001791967.1| NusB antitermination factor [Leptothrix cholodnii SP-6]
 gi|170777063|gb|ACB35202.1| NusB antitermination factor [Leptothrix cholodnii SP-6]
          Length = 171

 Score = 45.1 bits (105), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 27/90 (30%), Positives = 44/90 (48%), Gaps = 2/90 (2%)

Query: 65  DLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVE 124
           D   F  ++HG + +   +D +++  L  +     L  +   +L  G  EL  C  VP +
Sbjct: 68  DTAHFSALLHGCIAQVAALDAVLTPHLDRR--VQELSPVEHGVLLIGAYELQHCLDVPYK 125

Query: 125 VIISEYVCIAHDFFYGDEPKFINAVLDKVS 154
           V I+E V +A  F   D  K++N VLDK +
Sbjct: 126 VAINEAVELAKSFGGTDGHKYVNGVLDKAA 155


>gi|241758553|ref|ZP_04756670.1| transcription antitermination factor NusB [Neisseria flavescens
           SK114]
 gi|241321296|gb|EER57456.1| transcription antitermination factor NusB [Neisseria flavescens
           SK114]
          Length = 142

 Score = 45.1 bits (105), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 50/163 (30%), Positives = 70/163 (42%), Gaps = 30/163 (18%)

Query: 10  LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF 69
           +K   RR  AR  AVQA+YQ  I   +  EI             EL   S   ++D E F
Sbjct: 1   MKSPRRR--ARELAVQAIYQAGINKTAAPEIAKNIH--------ELSQTS---NMDEELF 47

Query: 70  RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSV------PV 123
             +  G     +     IS  L       R +  L  I RA VL L+ CH +      P 
Sbjct: 48  NKLFFGTQTHAEEYMEKISPLL------DRDEKDLSPIERA-VL-LVACHELSTMPETPY 99

Query: 124 EVIISEYVCIAHDFFYGDEPKFINAVLDKVS---RKEEIKRSG 163
            VII+E + +   F   D  KF+N +LD+++   R +E +R G
Sbjct: 100 PVIINEAIEVTKTFGGTDGHKFVNGILDQLASRIRPDEPRRKG 142


>gi|227542181|ref|ZP_03972230.1| transcription antitermination protein NusB [Corynebacterium
           glucuronolyticum ATCC 51866]
 gi|227182010|gb|EEI62982.1| transcription antitermination protein NusB [Corynebacterium
           glucuronolyticum ATCC 51866]
          Length = 342

 Score = 45.1 bits (105), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 28/93 (30%), Positives = 45/93 (48%), Gaps = 2/93 (2%)

Query: 68  WFRVIIHGVMDRKQHIDLLISSCLTE-KWSFSRLDMILCSILRAGVLELI-ECHSVPVEV 125
           + R II GV      ID  I   L +  W+F RL  +  ++LR    EL+    +VP + 
Sbjct: 58  YTREIIEGVAVNLDLIDFAIERELADTDWTFDRLPGVDRAVLRVATWELLFNASNVPQKT 117

Query: 126 IISEYVCIAHDFFYGDEPKFINAVLDKVSRKEE 158
            +++ V +       D P ++NAVLD + +  E
Sbjct: 118 AVTQAVELVSQLSTDDSPAYVNAVLDAMWKNPE 150


>gi|148655139|ref|YP_001275344.1| NusB antitermination factor [Roseiflexus sp. RS-1]
 gi|166215713|sp|A5URZ1|NUSB_ROSS1 RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|148567249|gb|ABQ89394.1| NusB antitermination factor [Roseiflexus sp. RS-1]
          Length = 142

 Score = 45.1 bits (105), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 33/147 (22%), Positives = 65/147 (44%), Gaps = 16/147 (10%)

Query: 20  RLAAVQALYQIDIIGCSTTEIISE-YETYRFCADTELDVESVYLHVDLEWFRVIIHGVMD 78
           R  A+Q L+++D    S  ++++   E  R   + E             + R ++ G  +
Sbjct: 9   RAIALQILFELDATDHSPDQVVARRLEEERLPPEGE------------RFLRRLVFGAWE 56

Query: 79  RKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELI--ECHSVPVEVIISEYVCIAHD 136
              ++D +I       W  S++  +  +ILR  + E +  E    P++ II+E V +A  
Sbjct: 57  HASYLDRIIEET-APNWPVSQMPGVDKAILRIALFEALIDEEEKTPLKAIINEAVELAKQ 115

Query: 137 FFYGDEPKFINAVLDKVSRKEEIKRSG 163
           +   +  +F+N VL  V  +   +R G
Sbjct: 116 YGSDNSSRFVNGVLGTVVSRYRERRKG 142


>gi|296123835|ref|YP_003631613.1| transcription antitermination factor NusB [Planctomyces limnophilus
           DSM 3776]
 gi|296016175|gb|ADG69414.1| transcription antitermination factor NusB [Planctomyces limnophilus
           DSM 3776]
          Length = 163

 Score = 45.1 bits (105), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 40/152 (26%), Positives = 66/152 (43%), Gaps = 19/152 (12%)

Query: 15  RRGIARLAAVQALYQIDI---IGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71
           RR  AR   +Q LY  D+   +G         +E  R     EL  E++       W   
Sbjct: 5   RRHKAREVVLQMLYLKDLNPDVG---------FEQIRQMIQAELPDETLSRFA---WG-- 50

Query: 72  IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
           +  G M+ +  +D  I       WS SR+     ++LR G  EL++  + P  V+I E +
Sbjct: 51  LFSGAMEFRPALDKKIEEAAV-NWSLSRMAPTDRNVLRLGAYELLQTDT-PHRVVIDEAL 108

Query: 132 CIAHDFFYGDEPKFINAVLDKVSRKEEIKRSG 163
            +A  F   +   F+N +LD++   E+  R+ 
Sbjct: 109 ELAKSFGGANSGSFVNGILDRLLPPEKRARAA 140


>gi|227488822|ref|ZP_03919138.1| transcription antitermination protein NusB [Corynebacterium
           glucuronolyticum ATCC 51867]
 gi|227091244|gb|EEI26556.1| transcription antitermination protein NusB [Corynebacterium
           glucuronolyticum ATCC 51867]
          Length = 342

 Score = 45.1 bits (105), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 28/93 (30%), Positives = 45/93 (48%), Gaps = 2/93 (2%)

Query: 68  WFRVIIHGVMDRKQHIDLLISSCLTE-KWSFSRLDMILCSILRAGVLELI-ECHSVPVEV 125
           + R II GV      ID  I   L +  W+F RL  +  ++LR    EL+    +VP + 
Sbjct: 58  YTREIIEGVAVNLDLIDFAIERELADTDWTFDRLPGVDRAVLRVATWELLFNASNVPQKT 117

Query: 126 IISEYVCIAHDFFYGDEPKFINAVLDKVSRKEE 158
            +++ V +       D P ++NAVLD + +  E
Sbjct: 118 AVTQAVELVSQLSTDDSPAYVNAVLDAMWKNPE 150


>gi|311086765|gb|ADP66846.1| transcription antitermination protein NusB [Buchnera aphidicola
           str. TLW03 (Acyrthosiphon pisum)]
          Length = 143

 Score = 45.1 bits (105), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 46/144 (31%), Positives = 67/144 (46%), Gaps = 14/144 (9%)

Query: 10  LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF 69
           +K S RR  AR  A+Q LY  +I    +   I E   Y      + +++ VY       F
Sbjct: 1   MKPSFRRK-ARACALQVLYSWEI----SHNNIKESAIYFLKEKNKKNIDIVY-------F 48

Query: 70  RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISE 129
             +I G+    ++ID L+   L    S   L  I  +ILR    EL + + +P +V I+E
Sbjct: 49  YELIIGITYDCKNIDNLMKPYLFR--SLKELGHIERAILRISFYELHKRNDIPYKVSINE 106

Query: 130 YVCIAHDFFYGDEPKFINAVLDKV 153
            + +A  F   D  KFIN VLDK 
Sbjct: 107 GIELAKLFGSEDSHKFINGVLDKA 130


>gi|219681813|ref|YP_002468199.1| transcription antitermination protein NusB [Buchnera aphidicola
           str. 5A (Acyrthosiphon pisum)]
 gi|219682368|ref|YP_002468752.1| transcription antitermination protein NusB [Buchnera aphidicola
           str. Tuc7 (Acyrthosiphon pisum)]
 gi|257471515|ref|ZP_05635514.1| transcription antitermination protein NusB [Buchnera aphidicola
           str. LSR1 (Acyrthosiphon pisum)]
 gi|254772618|sp|B8D9P0|NUSB_BUCA5 RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|254772619|sp|B8D7Z2|NUSB_BUCAT RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|219622101|gb|ACL30257.1| transcription antitermination protein NusB [Buchnera aphidicola
           str. Tuc7 (Acyrthosiphon pisum)]
 gi|219624656|gb|ACL30811.1| transcription antitermination protein NusB [Buchnera aphidicola
           str. 5A (Acyrthosiphon pisum)]
 gi|311086189|gb|ADP66271.1| transcription antitermination protein NusB [Buchnera aphidicola
           str. LL01 (Acyrthosiphon pisum)]
 gi|311087353|gb|ADP67433.1| transcription antitermination protein NusB [Buchnera aphidicola
           str. JF99 (Acyrthosiphon pisum)]
          Length = 143

 Score = 45.1 bits (105), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 46/144 (31%), Positives = 67/144 (46%), Gaps = 14/144 (9%)

Query: 10  LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF 69
           +K S RR  AR  A+Q LY  +I    +   I E   Y      + +++ VY       F
Sbjct: 1   MKPSFRRK-ARACALQVLYSWEI----SHNNIKESAIYFLKEKNKKNIDIVY-------F 48

Query: 70  RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISE 129
             +I G+    ++ID L+   L    S   L  I  +ILR    EL + + +P +V I+E
Sbjct: 49  YELIIGITYDCKNIDNLMKPYLFR--SLKELGHIERAILRISFYELHKRNDIPYKVSINE 106

Query: 130 YVCIAHDFFYGDEPKFINAVLDKV 153
            + +A  F   D  KFIN VLDK 
Sbjct: 107 GIELAKLFGSEDSHKFINGVLDKA 130


>gi|317502725|ref|ZP_07960836.1| NusB family protein [Prevotella salivae DSM 15606]
 gi|315666169|gb|EFV05725.1| NusB family protein [Prevotella salivae DSM 15606]
          Length = 317

 Score = 45.1 bits (105), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 26/87 (29%), Positives = 43/87 (49%), Gaps = 5/87 (5%)

Query: 69  FRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIIS 128
           FR  I    D+ QH      S  +  W F RL  +   I++  + E++   ++PV V I+
Sbjct: 215 FRATIINA-DQYQHY----MSEASRNWDFGRLAYMDIVIMQIAIAEMLTFPNIPVSVTIN 269

Query: 129 EYVCIAHDFFYGDEPKFINAVLDKVSR 155
           EYV +A  +       +IN +LD ++R
Sbjct: 270 EYVDLAKLYSTSKSAGYINGMLDSIAR 296


>gi|268611642|ref|ZP_06145369.1| sun protein [Ruminococcus flavefaciens FD-1]
          Length = 443

 Score = 45.1 bits (105), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 27/92 (29%), Positives = 48/92 (52%), Gaps = 2/92 (2%)

Query: 65  DLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVE 124
           D  +   + +GV++RK  +D +++   +     S+LD I+ +ILR G+ +L+   +VP  
Sbjct: 39  DKRFCTALYYGVIERKITLDHILTGLSSR--PLSKLDSIIITILRCGIYQLLYMENVPDN 96

Query: 125 VIISEYVCIAHDFFYGDEPKFINAVLDKVSRK 156
             ++E V +A  F        +NAVL    RK
Sbjct: 97  AAVNESVKLAKKFGKTSASGMVNAVLRNFIRK 128


>gi|317122010|ref|YP_004102013.1| NusB antitermination factor [Thermaerobacter marianensis DSM 12885]
 gi|315591990|gb|ADU51286.1| NusB antitermination factor [Thermaerobacter marianensis DSM 12885]
          Length = 237

 Score = 45.1 bits (105), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 27/84 (32%), Positives = 43/84 (51%), Gaps = 3/84 (3%)

Query: 74  HGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIEC--HSVPVEVIISEYV 131
            GV  R+  ID LI+      W   RL  +  ++LR G+ EL+      VP  V I+E V
Sbjct: 60  RGVTRRRLDIDGLIAR-YARDWDLERLARVDRNVLRLGIYELLYAGRPDVPPPVAINEAV 118

Query: 132 CIAHDFFYGDEPKFINAVLDKVSR 155
            +A  +   D  +F+N +L +++R
Sbjct: 119 ELAKRYSSEDAARFVNGILGQLAR 142


>gi|262066420|ref|ZP_06026032.1| transcription antitermination factor NusB [Fusobacterium
           periodonticum ATCC 33693]
 gi|291379847|gb|EFE87365.1| transcription antitermination factor NusB [Fusobacterium
           periodonticum ATCC 33693]
          Length = 152

 Score = 45.1 bits (105), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 25/92 (27%), Positives = 52/92 (56%), Gaps = 6/92 (6%)

Query: 66  LEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEV 125
           LE+ R  I+G+ +   +I  +I    T+ W++SR+ ++  ++L     E +   + P+EV
Sbjct: 63  LEFIRSSINGIAENYDNIKDIIKKN-TKNWAYSRIGLVERTLLIIATYEFL-FKNTPIEV 120

Query: 126 IISEYVCIAHDFFYGDEP--KFINAVLDKVSR 155
           + +E V +A +  YG+E   +F+N +L  + +
Sbjct: 121 VANETVELAKE--YGNEKSYEFVNGILANIGK 150


>gi|227510480|ref|ZP_03940529.1| transcription antitermination protein NusB [Lactobacillus brevis
           subsp. gravesensis ATCC 27305]
 gi|227513489|ref|ZP_03943538.1| transcription antitermination protein NusB [Lactobacillus buchneri
           ATCC 11577]
 gi|227524631|ref|ZP_03954680.1| transcription antitermination protein NusB [Lactobacillus hilgardii
           ATCC 8290]
 gi|227083362|gb|EEI18674.1| transcription antitermination protein NusB [Lactobacillus buchneri
           ATCC 11577]
 gi|227088115|gb|EEI23427.1| transcription antitermination protein NusB [Lactobacillus hilgardii
           ATCC 8290]
 gi|227190132|gb|EEI70199.1| transcription antitermination protein NusB [Lactobacillus brevis
           subsp. gravesensis ATCC 27305]
          Length = 137

 Score = 45.1 bits (105), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 23/76 (30%), Positives = 39/76 (51%)

Query: 75  GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134
           GV+D K+ +D LI   L   WS +R+      IL   + E++    +P +V I+E + +A
Sbjct: 53  GVVDHKEELDNLIEKYLKSGWSINRIAKTDLIILEIALYEMLHVDDLPAKVSINEAIELA 112

Query: 135 HDFFYGDEPKFINAVL 150
             +      KF+N +L
Sbjct: 113 KKYSDDRSRKFVNGIL 128


>gi|325270436|ref|ZP_08137040.1| NusB family protein [Prevotella multiformis DSM 16608]
 gi|324987232|gb|EGC19211.1| NusB family protein [Prevotella multiformis DSM 16608]
          Length = 385

 Score = 45.1 bits (105), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 25/87 (28%), Positives = 44/87 (50%), Gaps = 5/87 (5%)

Query: 69  FRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIIS 128
           FR  I    D + ++     S  +  W FSRL  +   I++  + E++   ++PV V I+
Sbjct: 215 FRATILNADDYQHYM-----SESSRNWDFSRLAYMDVVIMQIAIAEMLTFPNIPVSVTIN 269

Query: 129 EYVCIAHDFFYGDEPKFINAVLDKVSR 155
           EYV +A  +       +IN +LD ++R
Sbjct: 270 EYVDLAKLYSTPRSGGYINGMLDTIAR 296


>gi|322391457|ref|ZP_08064926.1| N utilization substance protein B [Streptococcus peroris ATCC
           700780]
 gi|321145540|gb|EFX40932.1| N utilization substance protein B [Streptococcus peroris ATCC
           700780]
          Length = 140

 Score = 45.1 bits (105), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 24/81 (29%), Positives = 42/81 (51%), Gaps = 1/81 (1%)

Query: 72  IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
           ++ GV  +K+ +D  I+  L   W+  RL ++  ++LR GV E I     P  V ++E +
Sbjct: 55  LVTGVQAQKEELDKQITQHLKAGWTIDRLTLVEKNLLRLGVFE-ITSFDTPQLVAVNEAI 113

Query: 132 CIAHDFFYGDEPKFINAVLDK 152
            +A  F      +FIN +L +
Sbjct: 114 ELAKSFSDQKSARFINGLLSQ 134


>gi|15617061|ref|NP_240274.1| transcription antitermination protein NusB [Buchnera aphidicola
           str. APS (Acyrthosiphon pisum)]
 gi|11134003|sp|P57535|NUSB_BUCAI RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|25299794|pir||H84983 N utilization substance protein B [imported] - Buchnera sp.
           (strain APS)
 gi|10039126|dbj|BAB13160.1| N utilization substance protein B [Buchnera aphidicola str. APS
           (Acyrthosiphon pisum)]
          Length = 143

 Score = 45.1 bits (105), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 46/144 (31%), Positives = 67/144 (46%), Gaps = 14/144 (9%)

Query: 10  LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF 69
           +K S RR  AR  A+Q LY  +I    +   I E   Y      + +++ VY       F
Sbjct: 1   MKPSFRRK-ARACALQVLYSWEI----SHNNIKESAIYFLKEKNKKNIDIVY-------F 48

Query: 70  RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISE 129
             +I G+    ++ID L+   L    S   L  I  +ILR    EL + + +P +V I+E
Sbjct: 49  YELIIGITYDCKNIDNLMKPYLFR--SLKELGHIERAILRISFYELHKRNDIPYKVSINE 106

Query: 130 YVCIAHDFFYGDEPKFINAVLDKV 153
            + +A  F   D  KFIN VLDK 
Sbjct: 107 GIELAKLFGSEDSHKFINGVLDKA 130


>gi|239632001|ref|ZP_04675032.1| NusB antitermination factor [Lactobacillus paracasei subsp.
           paracasei 8700:2]
 gi|239526466|gb|EEQ65467.1| NusB antitermination factor [Lactobacillus paracasei subsp.
           paracasei 8700:2]
          Length = 139

 Score = 44.7 bits (104), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 26/105 (24%), Positives = 51/105 (48%), Gaps = 6/105 (5%)

Query: 52  DTELDVESVYLHV---DLE---WFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILC 105
           + E D ++VY  V   D E   +   ++  V+ ++  +D  ++  L + W+ +RL     
Sbjct: 25  NPEADKDAVYAEVLPQDTEVPAYLTTLVEAVLSKQADLDAALTPQLKKGWTLNRLTKPDL 84

Query: 106 SILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVL 150
            ILR G+ E+    ++P    I+E + +A  +      KF+N +L
Sbjct: 85  IILRLGLYEIRYEEAMPEAAAINEAINLAKRYSDDQSAKFVNGIL 129


>gi|89901446|ref|YP_523917.1| NusB antitermination factor [Rhodoferax ferrireducens T118]
 gi|119390807|sp|Q21V17|NUSB_RHOFD RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|89346183|gb|ABD70386.1| NusB antitermination factor [Rhodoferax ferrireducens T118]
          Length = 177

 Score = 44.7 bits (104), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 43/139 (30%), Positives = 69/139 (49%), Gaps = 13/139 (9%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           R  AR  A+QALYQ  ++G +T   I  + T      ++ D     LH D      ++ G
Sbjct: 35  RSRAREFALQALYQ-SLVGKNTVSDIDAF-TRDLAGFSKAD----SLHFD-----TLLQG 83

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
             ++   +D L+   L  K  F+ +  I  SI+  G  EL  C  VP  V+++E V +A 
Sbjct: 84  CTEQAAALDALLLPLLDRK--FAEISPIEHSIMWIGAFELQHCLDVPWRVVLNECVELAK 141

Query: 136 DFFYGDEPKFINAVLDKVS 154
           +F   D  K++NAVL+ ++
Sbjct: 142 EFGGTDGHKYVNAVLNSLA 160


>gi|313203078|ref|YP_004041735.1| nusb antitermination factor [Paludibacter propionicigenes WB4]
 gi|312442394|gb|ADQ78750.1| NusB antitermination factor [Paludibacter propionicigenes WB4]
          Length = 316

 Score = 44.7 bits (104), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 24/89 (26%), Positives = 45/89 (50%), Gaps = 1/89 (1%)

Query: 65  DLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVE 124
           D E+ R ++  V+ +   +  +I    T+ W   R+  +   I+   + EL++  ++PV 
Sbjct: 208 DAEFARKLMRSVLTKGPKLREMID-VNTKNWELDRIAFMDIVIMEVALAELMDFPTIPVN 266

Query: 125 VIISEYVCIAHDFFYGDEPKFINAVLDKV 153
           V ++EY+ IA  +       FIN VLD +
Sbjct: 267 VTLNEYIEIAKTYSTEKSGTFINGVLDNI 295


>gi|188586319|ref|YP_001917864.1| NusB antitermination factor [Natranaerobius thermophilus
           JW/NM-WN-LF]
 gi|229620365|sp|B2A534|NUSB_NATTJ RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|179351006|gb|ACB85276.1| NusB antitermination factor [Natranaerobius thermophilus
           JW/NM-WN-LF]
          Length = 139

 Score = 44.7 bits (104), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 25/76 (32%), Positives = 38/76 (50%), Gaps = 1/76 (1%)

Query: 81  QHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYG 140
           Q ID  I    +E W   RL  +  SILR  + E++    +P  V I+E V +A  F   
Sbjct: 60  QKIDEYIEK-FSENWKIDRLSKVDLSILRLAISEILFFDDIPTRVSINEAVELAKKFSTD 118

Query: 141 DEPKFINAVLDKVSRK 156
               +IN +LD+V+ +
Sbjct: 119 KASGYINGILDQVANQ 134


>gi|296113998|ref|YP_003627936.1| transcription termination/antitermination protein NusB [Moraxella
           catarrhalis RH4]
 gi|295921692|gb|ADG62043.1| transcription termination/antitermination protein NusB [Moraxella
           catarrhalis RH4]
 gi|326565100|gb|EGE15293.1| transcription termination/antitermination protein NusB [Moraxella
           catarrhalis 46P47B1]
 gi|326567268|gb|EGE17388.1| transcription termination/antitermination protein NusB [Moraxella
           catarrhalis 12P80B1]
 gi|326568226|gb|EGE18308.1| transcription termination/antitermination protein NusB [Moraxella
           catarrhalis BC8]
 gi|326569926|gb|EGE19973.1| transcription termination/antitermination protein NusB [Moraxella
           catarrhalis BC1]
 gi|326573689|gb|EGE23647.1| transcription termination/antitermination protein NusB [Moraxella
           catarrhalis O35E]
          Length = 175

 Score = 44.7 bits (104), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 38/142 (26%), Positives = 67/142 (47%), Gaps = 8/142 (5%)

Query: 19  ARLAAVQALYQIDI----IGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74
           AR  AVQ LY+  +          +++   E +   A T  D     +H  L ++  ++ 
Sbjct: 28  ARRFAVQGLYEWLMTDYRFAKQRRDLLGGNEPHTIAARTRADNAMHTVH--LGYYHELMR 85

Query: 75  GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134
            +  +   ++ LI S L  +   S+LD+I  +IL  G  EL     +P +V++ E + + 
Sbjct: 86  NIPAQIDELESLIVSQLDRE--LSKLDIIEHAILLIGTYELKHSLHIPYKVVLDEAMKLN 143

Query: 135 HDFFYGDEPKFINAVLDKVSRK 156
             F   D  K INAV+DK+++ 
Sbjct: 144 VHFGATDAHKLINAVMDKIAKN 165


>gi|326559289|gb|EGE09716.1| transcription termination/antitermination protein NusB [Moraxella
           catarrhalis 7169]
 gi|326564337|gb|EGE14567.1| transcription termination/antitermination protein NusB [Moraxella
           catarrhalis 103P14B1]
 gi|326570003|gb|EGE20049.1| transcription termination/antitermination protein NusB [Moraxella
           catarrhalis BC7]
 gi|326572862|gb|EGE22847.1| transcription termination/antitermination protein NusB [Moraxella
           catarrhalis CO72]
 gi|326574686|gb|EGE24622.1| transcription termination/antitermination protein NusB [Moraxella
           catarrhalis 101P30B1]
          Length = 175

 Score = 44.7 bits (104), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 38/142 (26%), Positives = 67/142 (47%), Gaps = 8/142 (5%)

Query: 19  ARLAAVQALYQIDI----IGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74
           AR  AVQ LY+  +          +++   E +   A T  D     +H  L ++  ++ 
Sbjct: 28  ARRFAVQGLYEWLMTDYRFAKQRRDLLGGNEPHTIAARTRADNAMHTVH--LGYYHELMR 85

Query: 75  GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134
            +  +   ++ LI S L  +   S+LD+I  +IL  G  EL     +P +V++ E + + 
Sbjct: 86  NIPAQIDELESLIVSQLDRE--LSKLDIIEHAILLIGTYELKHSLHIPYKVVLDEAMKLN 143

Query: 135 HDFFYGDEPKFINAVLDKVSRK 156
             F   D  K INAV+DK+++ 
Sbjct: 144 VHFGATDAHKLINAVMDKIAKN 165


>gi|320547470|ref|ZP_08041756.1| transcription antitermination factor NusB [Streptococcus equinus
           ATCC 9812]
 gi|320447815|gb|EFW88572.1| transcription antitermination factor NusB [Streptococcus equinus
           ATCC 9812]
          Length = 142

 Score = 44.7 bits (104), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 27/83 (32%), Positives = 42/83 (50%), Gaps = 4/83 (4%)

Query: 72  IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
           ++ GV D +  +D  I + L   WS  RL +   S+LR G+ E+      P  V ++E +
Sbjct: 58  LVKGVCDMQAELDQQIEAHLKAGWSLERLTLTDKSLLRLGLYEVRYFEETPGRVAVNEII 117

Query: 132 CIAHDFFYGDE--PKFINAVLDK 152
            IA    Y DE   KF+N +L +
Sbjct: 118 EIAKK--YSDETSAKFVNGLLSQ 138


>gi|114776397|ref|ZP_01451442.1| transcription antitermination protein NusB [Mariprofundus
           ferrooxydans PV-1]
 gi|114553227|gb|EAU55625.1| transcription antitermination protein NusB [Mariprofundus
           ferrooxydans PV-1]
          Length = 145

 Score = 44.7 bits (104), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 26/93 (27%), Positives = 50/93 (53%), Gaps = 3/93 (3%)

Query: 65  DLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVE 124
           D  + R  ++G+ D    +D LI + +  + S   +  I  +++R  V E+     +P  
Sbjct: 45  DESYLREAVYGITDHTDALDELIKTAVRGR-SLRSVAQIEINVIRLAVWEMQNRLEIPYR 103

Query: 125 VIISEYVCIAHDFFYGDEPK-FINAVLDKVSRK 156
           VII+E + +  D+  G+ P+ FIN VLD ++++
Sbjct: 104 VIINEALELTRDYA-GEPPRGFINGVLDNLAKQ 135


>gi|322377045|ref|ZP_08051537.1| transcription antitermination factor NusB [Streptococcus sp. M334]
 gi|321281758|gb|EFX58766.1| transcription antitermination factor NusB [Streptococcus sp. M334]
          Length = 139

 Score = 44.7 bits (104), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 24/86 (27%), Positives = 44/86 (51%), Gaps = 1/86 (1%)

Query: 72  IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
           ++ GV  +K  +D  I+  L   W+  RL ++  ++LR G+ E I     P  V ++E +
Sbjct: 55  LVSGVQAQKDELDKQINQHLKSGWTVERLTLVEKNLLRLGIFE-ITSFDTPQLVAVNEAI 113

Query: 132 CIAHDFFYGDEPKFINAVLDKVSRKE 157
            +A +F      +FIN +L +   +E
Sbjct: 114 ELAKNFSDQKSARFINGLLSQFVTEE 139


>gi|13357860|ref|NP_078134.1| transcription termination factor [Ureaplasma parvum serovar 3 str.
           ATCC 700970]
 gi|170761973|ref|YP_001752382.1| transcription antitermination factor NusB [Ureaplasma parvum
           serovar 3 str. ATCC 27815]
 gi|171920328|ref|ZP_02691332.2| transcription antitermination factor NusB [Ureaplasma parvum
           serovar 1 str. ATCC 27813]
 gi|183508752|ref|ZP_02690168.2| transcription antitermination factor NusB [Ureaplasma parvum
           serovar 14 str. ATCC 33697]
 gi|186701937|ref|ZP_02554155.2| transcription antitermination factor NusB [Ureaplasma parvum
           serovar 6 str. ATCC 27818]
 gi|11357059|pir||A82909 transcription termination factor UU300 [imported] - Ureaplasma
           urealyticum
 gi|6899275|gb|AAF30709.1|AE002127_7 transcription termination factor [Ureaplasma parvum serovar 3 str.
           ATCC 700970]
 gi|168827550|gb|ACA32812.1| transcription antitermination factor NusB [Ureaplasma parvum
           serovar 3 str. ATCC 27815]
 gi|171902748|gb|EDT49037.1| transcription antitermination factor NusB [Ureaplasma parvum
           serovar 1 str. ATCC 27813]
 gi|182675685|gb|EDT87590.1| transcription antitermination factor NusB [Ureaplasma parvum
           serovar 14 str. ATCC 33697]
 gi|186700685|gb|EDU18967.1| transcription antitermination factor NusB [Ureaplasma parvum
           serovar 6 str. ATCC 27818]
          Length = 127

 Score = 44.7 bits (104), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 23/90 (25%), Positives = 50/90 (55%), Gaps = 2/90 (2%)

Query: 64  VDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPV 123
           +DL W  V  + ++D  + +  +I   +++ W+F RL  +  ++L +   E +   + P 
Sbjct: 38  LDLNWINVGEY-ILDNYEQLTKMIKPLISKDWTFERLSYVEQALLLSAYGEYLVLKT-PK 95

Query: 124 EVIISEYVCIAHDFFYGDEPKFINAVLDKV 153
           ++II + +   H++   +  KFINA+LD++
Sbjct: 96  KIIIDQTLITTHNYSNNESYKFINAILDQL 125


>gi|315655389|ref|ZP_07908289.1| transcription antitermination protein NusB [Mobiluncus curtisii
           ATCC 51333]
 gi|315490329|gb|EFU79954.1| transcription antitermination protein NusB [Mobiluncus curtisii
           ATCC 51333]
          Length = 191

 Score = 44.7 bits (104), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 37/143 (25%), Positives = 63/143 (44%), Gaps = 14/143 (9%)

Query: 15  RRGIARLAAVQALYQIDIIGCSTTEII---SEYETYRFCADTELDVESVYLHVDLEWFRV 71
           RR   R+ AV  LY+  + G  T E I   S+       A T L   +V           
Sbjct: 7   RRTRERVRAVDVLYEAHVRGWDTPEGIFSLSQLRQDETTAQTPLPAYAVE---------- 56

Query: 72  IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
           I+ GV +  + ID  +++  ++ W   R+  +  +I+R    E++    V   V I+  +
Sbjct: 57  ILEGVAEHLERIDAALATY-SKAWPLHRMPEVDLAIMRVAAWEILFNPDVTGPVAITAAM 115

Query: 132 CIAHDFFYGDEPKFINAVLDKVS 154
            IA +    + PKFIN +L  ++
Sbjct: 116 QIAEERSTDESPKFINGLLGAIN 138


>gi|325266364|ref|ZP_08133042.1| transcription antitermination factor NusB [Kingella denitrificans
           ATCC 33394]
 gi|324982157|gb|EGC17791.1| transcription antitermination factor NusB [Kingella denitrificans
           ATCC 33394]
          Length = 148

 Score = 44.7 bits (104), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 44/167 (26%), Positives = 69/167 (41%), Gaps = 26/167 (15%)

Query: 3   IQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYL 62
           + + KK  K   RR  AR  AVQALYQ  I      E+      +           + + 
Sbjct: 1   MSEPKKTKKSPRRR--AREFAVQALYQTAINKIPAEEVAKNTREH-----------TDFK 47

Query: 63  HVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRA----GVLELIEC 118
           + D E F  +  G   +++     I   L       R + ++  + RA     V EL   
Sbjct: 48  NADDELFTAVFFGAHRQQREYMQQIRPHL------DRDENLISPVERAVLLLAVHELAAM 101

Query: 119 HSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVS---RKEEIKRS 162
              P  V+I+E + +   F   D  KFIN++LDK++   R  + KR+
Sbjct: 102 PETPYPVVINEAIELTKTFGGTDSHKFINSILDKLAAELRPNDPKRA 148


>gi|124514784|gb|EAY56296.1| transcription antitermination factor (NusB) [Leptospirillum
           rubarum]
          Length = 168

 Score = 44.7 bits (104), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 26/87 (29%), Positives = 47/87 (54%), Gaps = 2/87 (2%)

Query: 69  FRVIIHG-VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVII 127
           FR  + G + + ++ ID +IS   +  W+  R+  +  +ILR G+ E++    VP  V +
Sbjct: 58  FRDRLGGAIREHREEIDTVISR-FSVDWTLDRMSRVDRNILRMGICEILFEPEVPFRVTV 116

Query: 128 SEYVCIAHDFFYGDEPKFINAVLDKVS 154
            E + +AH F   +  +FIN +L +V 
Sbjct: 117 DESLELAHQFSEPEAVRFINGILHRVG 143


>gi|289168504|ref|YP_003446773.1| transcription termination factor nusB [Streptococcus mitis B6]
 gi|288908071|emb|CBJ22911.1| transcription termination factor nusB [Streptococcus mitis B6]
          Length = 139

 Score = 44.7 bits (104), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 24/86 (27%), Positives = 44/86 (51%), Gaps = 1/86 (1%)

Query: 72  IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
           ++ GV  +K  +D  I+  L   W+  RL ++  ++LR G+ E I     P  V ++E +
Sbjct: 55  LVSGVQTQKDELDKQINQHLKPGWTVERLTLVEKNLLRLGIFE-ITSFDTPQLVAVNEAI 113

Query: 132 CIAHDFFYGDEPKFINAVLDKVSRKE 157
            +A +F      +FIN +L +   +E
Sbjct: 114 ELAKNFSDQKSARFINGLLSQFVTEE 139


>gi|301066686|ref|YP_003788709.1| transcription termination factor [Lactobacillus casei str. Zhang]
 gi|300439093|gb|ADK18859.1| Transcription termination factor [Lactobacillus casei str. Zhang]
          Length = 135

 Score = 44.7 bits (104), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 26/105 (24%), Positives = 51/105 (48%), Gaps = 6/105 (5%)

Query: 52  DTELDVESVYLHV---DLE---WFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILC 105
           + E D ++VY  V   D E   +   ++  V+ ++  +D  ++  L + W+ +RL     
Sbjct: 21  NPEADKDAVYAEVLPQDTEVPAYLTTLVEAVLSKQADLDAALTPQLKKGWTLNRLTKPDL 80

Query: 106 SILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVL 150
            ILR G+ E+    ++P    I+E + +A  +      KF+N +L
Sbjct: 81  IILRLGLYEIRYEEAMPEAAAINEAINLAKRYSDDQSAKFVNGIL 125


>gi|307708254|ref|ZP_07644721.1| transcription antitermination factor NusB [Streptococcus mitis NCTC
           12261]
 gi|307615700|gb|EFN94906.1| transcription antitermination factor NusB [Streptococcus mitis NCTC
           12261]
          Length = 141

 Score = 44.7 bits (104), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 24/86 (27%), Positives = 44/86 (51%), Gaps = 1/86 (1%)

Query: 72  IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
           ++ GV  +K  +D  I+  L   W+  RL ++  ++LR G+ E I     P  V ++E +
Sbjct: 55  LVSGVQAQKDELDKQINQHLKSGWTVERLTLVEKNLLRLGIFE-ITSFDTPQLVAVNEAI 113

Query: 132 CIAHDFFYGDEPKFINAVLDKVSRKE 157
            +A +F      +FIN +L +   +E
Sbjct: 114 ELAKNFSDQKSARFINGLLSQFVTEE 139


>gi|304389451|ref|ZP_07371414.1| transcription antitermination factor NusB [Mobiluncus curtisii
           subsp. curtisii ATCC 35241]
 gi|304327261|gb|EFL94496.1| transcription antitermination factor NusB [Mobiluncus curtisii
           subsp. curtisii ATCC 35241]
          Length = 191

 Score = 44.7 bits (104), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 37/142 (26%), Positives = 62/142 (43%), Gaps = 14/142 (9%)

Query: 15  RRGIARLAAVQALYQIDIIGCSTTEII---SEYETYRFCADTELDVESVYLHVDLEWFRV 71
           RR   R+ AV  LY+  + G  T E I   S+       A T L   +V           
Sbjct: 7   RRTRERIRAVDVLYEAHVRGWDTPEGIFSLSQLRQDETTAQTPLPAYAVE---------- 56

Query: 72  IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
           I+ GV +  + ID  +++  ++ W   R+  +  +I+R    E++    V   V I+  +
Sbjct: 57  ILEGVAEHLERIDAALATY-SKAWPLHRMPEVDLAIMRVAAWEILFNPDVTGPVAITAAM 115

Query: 132 CIAHDFFYGDEPKFINAVLDKV 153
            IA +    + PKFIN +L  +
Sbjct: 116 QIAEERSTDESPKFINGLLGAI 137


>gi|238063911|ref|ZP_04608620.1| transcription antitermination factor nusB [Micromonospora sp. ATCC
           39149]
 gi|237885722|gb|EEP74550.1| transcription antitermination factor nusB [Micromonospora sp. ATCC
           39149]
          Length = 136

 Score = 44.7 bits (104), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 26/83 (31%), Positives = 42/83 (50%), Gaps = 1/83 (1%)

Query: 72  IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
           ++ GV      ID LI+S   E W+  R+  +  ++ R  V EL+    +   V ISE V
Sbjct: 50  LVEGVAAHLGRIDELIASY-AEGWTLDRMPAVDRNLARIAVYELLYVDELDDAVAISEAV 108

Query: 132 CIAHDFFYGDEPKFINAVLDKVS 154
            +A      D P+F+N VL +++
Sbjct: 109 ELARQMSTDDSPRFLNGVLGRIA 131


>gi|171779279|ref|ZP_02920250.1| hypothetical protein STRINF_01127 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
 gi|171282335|gb|EDT47762.1| hypothetical protein STRINF_01127 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
          Length = 142

 Score = 44.7 bits (104), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 41/145 (28%), Positives = 66/145 (45%), Gaps = 13/145 (8%)

Query: 11  KLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYE-TYRFCADTELDVESVYLHVDLEWF 69
             ++ R   R  A QAL+ ++  G    E +   E  Y +    E D E V + V   + 
Sbjct: 4   NFTNSRRDLRERAFQALFSLEFGG----EYLQAAEFAYTYDKTVEED-EEVQVPV---FL 55

Query: 70  RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISE 129
             ++ GV D +  +D  I + L   WS  RL +   ++LR G+ E+      P  V ++E
Sbjct: 56  LNLVKGVCDLQSELDQQIEAHLKSGWSLERLTLTDKALLRLGLYEVKYFEETPGRVAVNE 115

Query: 130 YVCIAHDFFYGDE--PKFINAVLDK 152
            + IA    Y DE   KF+N +L +
Sbjct: 116 IIEIAKK--YSDETSAKFVNGLLSQ 138


>gi|307706079|ref|ZP_07642898.1| transcription antitermination factor NusB [Streptococcus mitis
           SK321]
 gi|307618479|gb|EFN97627.1| transcription antitermination factor NusB [Streptococcus mitis
           SK321]
          Length = 139

 Score = 44.7 bits (104), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 24/86 (27%), Positives = 44/86 (51%), Gaps = 1/86 (1%)

Query: 72  IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
           ++ GV  +K  +D  I+  L   W+  RL ++  ++LR G+ E I     P  V ++E +
Sbjct: 55  LVSGVQAQKDELDKQINQHLKSGWTVERLTLVEKNLLRLGIFE-ITSFDTPQLVAVNEAI 113

Query: 132 CIAHDFFYGDEPKFINAVLDKVSRKE 157
            +A +F      +FIN +L +   +E
Sbjct: 114 ELAKNFSDQKSARFINGLLSQFVTEE 139


>gi|294673022|ref|YP_003573638.1| transcription antitermination factor NusB [Prevotella ruminicola
           23]
 gi|294473573|gb|ADE82962.1| transcription antitermination factor NusB [Prevotella ruminicola
           23]
          Length = 282

 Score = 44.7 bits (104), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 24/87 (27%), Positives = 45/87 (51%), Gaps = 5/87 (5%)

Query: 69  FRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIIS 128
           FR  I    + ++++     S  +  W FSRL  +   +++  + E++   +VP+ V I+
Sbjct: 169 FRAAIMNADEYQRYM-----SEASRNWDFSRLAYMDIILMQIAIAEMMTLPNVPISVTIN 223

Query: 129 EYVCIAHDFFYGDEPKFINAVLDKVSR 155
           EYV IA  +       +IN +LD ++R
Sbjct: 224 EYVEIAKFYSTPKSAGYINGMLDGIAR 250


>gi|269795116|ref|YP_003314571.1| tRNA/rRNA cytosine-C5-methylase [Sanguibacter keddieii DSM 10542]
 gi|269097301|gb|ACZ21737.1| tRNA/rRNA cytosine-C5-methylase [Sanguibacter keddieii DSM 10542]
          Length = 505

 Score = 44.7 bits (104), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 25/86 (29%), Positives = 42/86 (48%), Gaps = 3/86 (3%)

Query: 72  IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
           + +G +  +   D +I  C+       ++D  +  +LR G  +L+    VP    +SE V
Sbjct: 91  LAYGTLRLRGRYDAIIGECVDRP--LDKIDAPVLDVLRLGAHQLLGMR-VPSHAAVSETV 147

Query: 132 CIAHDFFYGDEPKFINAVLDKVSRKE 157
            +A D       +F+NAVL K+SR E
Sbjct: 148 GLARDRVGAGSAQFVNAVLRKISRTE 173


>gi|315656698|ref|ZP_07909585.1| transcription antitermination factor NusB [Mobiluncus curtisii
           subsp. holmesii ATCC 35242]
 gi|315492653|gb|EFU82257.1| transcription antitermination factor NusB [Mobiluncus curtisii
           subsp. holmesii ATCC 35242]
          Length = 191

 Score = 44.7 bits (104), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 37/142 (26%), Positives = 62/142 (43%), Gaps = 14/142 (9%)

Query: 15  RRGIARLAAVQALYQIDIIGCSTTEII---SEYETYRFCADTELDVESVYLHVDLEWFRV 71
           RR   R+ AV  LY+  + G  T E I   S+       A T L   +V           
Sbjct: 7   RRTRERVRAVDVLYEAHVRGWDTPEGIFSLSQLRQDETTAQTPLPAYAVE---------- 56

Query: 72  IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
           I+ GV +  + ID  +++  ++ W   R+  +  +I+R    E++    V   V I+  +
Sbjct: 57  ILEGVAEHLERIDAALATY-SKAWPLHRMPEVDLAIMRVAAWEILFNPDVTGPVAITAAM 115

Query: 132 CIAHDFFYGDEPKFINAVLDKV 153
            IA +    + PKFIN +L  +
Sbjct: 116 QIAEERSTDESPKFINGLLGAI 137


>gi|291296745|ref|YP_003508143.1| NusB antitermination factor [Meiothermus ruber DSM 1279]
 gi|290471704|gb|ADD29123.1| NusB antitermination factor [Meiothermus ruber DSM 1279]
          Length = 152

 Score = 44.7 bits (104), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 33/120 (27%), Positives = 61/120 (50%), Gaps = 8/120 (6%)

Query: 51  ADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRA 110
           AD E DV     H  L + + ++ G   ++Q +D  ++S + E WSFS++     ++LR 
Sbjct: 39  ADQEADVLD---HEGLLFAQRLVQGYAAQQQTVDEALASTI-EGWSFSQMAKTDLAVLRL 94

Query: 111 GVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRSGCVSAITQ 170
              E++     P   +I   V IA  +   D  +F+N VL ++ ++ E   +G +SA+ +
Sbjct: 95  ATYEML-FEPTPYAPLIEVAVKIAKRYGGEDSGRFVNGVLARLLKRIE---AGELSAVAK 150


>gi|237750245|ref|ZP_04580725.1| predicted protein [Helicobacter bilis ATCC 43879]
 gi|229374139|gb|EEO24530.1| predicted protein [Helicobacter bilis ATCC 43879]
          Length = 368

 Score = 44.7 bits (104), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 25/84 (29%), Positives = 50/84 (59%), Gaps = 2/84 (2%)

Query: 72  IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
           ++HG+ + ++ I  +I+  L + W  SRL +I  +I++ GV EL++ ++    VII+E +
Sbjct: 49  LLHGICNEERKIADIINVFL-KSWDLSRLGVIEKNIIKLGVYELLQTNTQKA-VIINEAI 106

Query: 132 CIAHDFFYGDEPKFINAVLDKVSR 155
            +   F   D  + +N +LD V++
Sbjct: 107 ELTKSFNVQDAFRLVNGILDSVAK 130


>gi|167628417|ref|YP_001678916.1| transcription antitermination factor nusb [Heliobacterium
           modesticaldum Ice1]
 gi|238687883|sp|B0TEI6|NUSB_HELMI RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|167591157|gb|ABZ82905.1| transcription antitermination factor nusb [Heliobacterium
           modesticaldum Ice1]
          Length = 206

 Score = 44.7 bits (104), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 31/145 (21%), Positives = 67/145 (46%), Gaps = 14/145 (9%)

Query: 12  LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71
           +S R+G  R  A+Q L+  D+ G        +Y +  F                  + R 
Sbjct: 1   MSRRQG--RETALQTLFMADV-GRMEPAYALQYASEEFG----------ISEAAAAFARE 47

Query: 72  IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
           ++ G +  ++ ID  I   L ++W+  R+  +  ++LR  + E++    +P+   I+E +
Sbjct: 48  LVEGAVANRETIDGNIRR-LAKEWNLERMPHVDRNLLRVAIFEMLFREDIPLNAAINEAI 106

Query: 132 CIAHDFFYGDEPKFINAVLDKVSRK 156
            +A  +   +  KF+N +L +++R+
Sbjct: 107 ELAKIYANEESAKFVNGILGQLARE 131


>gi|260062175|ref|YP_003195255.1| NusB family protein [Robiginitalea biformata HTCC2501]
 gi|88783737|gb|EAR14908.1| NusB family protein [Robiginitalea biformata HTCC2501]
          Length = 366

 Score = 44.7 bits (104), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 26/92 (28%), Positives = 48/92 (52%), Gaps = 1/92 (1%)

Query: 65  DLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVE 124
           D+E+   ++   +++   ++  I    T  W   R+  I   +L+ G+ EL+   S+P  
Sbjct: 261 DMEFAMDLLRKTLNKNAALEAEIEGK-TPNWDKERIAEIDGILLKMGIAELLYFPSIPER 319

Query: 125 VIISEYVCIAHDFFYGDEPKFINAVLDKVSRK 156
           V I+EY+ IA ++       FIN +LDK+ R+
Sbjct: 320 VTINEYLEIAKEYSTPKSSIFINGILDKLIRE 351


>gi|88802775|ref|ZP_01118302.1| putative N utilization substance protein [Polaribacter irgensii
           23-P]
 gi|88781633|gb|EAR12811.1| putative N utilization substance protein [Polaribacter irgensii
           23-P]
          Length = 312

 Score = 44.3 bits (103), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 20/65 (30%), Positives = 36/65 (55%)

Query: 92  TEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLD 151
           T  W   R+  I   +++  + E +   S+P +V I+EY+ I+ D+       FIN VLD
Sbjct: 233 TPNWESDRIAGIDMILIKMAIAEFLNFSSIPTKVTINEYIEISKDYSTSRSSFFINGVLD 292

Query: 152 KVSRK 156
           K++++
Sbjct: 293 KIAKE 297


>gi|282879732|ref|ZP_06288462.1| transcription antitermination factor NusB [Prevotella timonensis
           CRIS 5C-B1]
 gi|281306401|gb|EFA98431.1| transcription antitermination factor NusB [Prevotella timonensis
           CRIS 5C-B1]
          Length = 334

 Score = 44.3 bits (103), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 20/67 (29%), Positives = 37/67 (55%)

Query: 89  SCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINA 148
           S  +  W FSRL  +   I++  + E++   ++P+ V I+EYV +A  +       +IN 
Sbjct: 230 SETSHNWDFSRLAYMDVVIMQIAIAEMLTFPNIPISVTINEYVNLAKLYSTPKSGGYING 289

Query: 149 VLDKVSR 155
           +LD ++R
Sbjct: 290 MLDAIAR 296


>gi|167860643|gb|ACA05102.1| putative N utilization substance protein [Flammeovirga yaeyamensis]
          Length = 200

 Score = 44.3 bits (103), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 25/103 (24%), Positives = 57/103 (55%), Gaps = 5/103 (4%)

Query: 65  DLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVE 124
           D E+F  +    +++++    +I+   ++KW+  R+  +   ++   + E++   ++PV+
Sbjct: 92  DKEFFEDLYKYTLEQEESFKEIIAKK-SKKWAIDRIAKVDSILINMALAEMLNFRNIPVK 150

Query: 125 VIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEE----IKRSG 163
           V I+E++ I+  +      +FIN +LD +S + E    IK+SG
Sbjct: 151 VTINEFIEISKQYSTPKSWQFINGMLDSISEELEAEGKIKKSG 193


>gi|167753516|ref|ZP_02425643.1| hypothetical protein ALIPUT_01791 [Alistipes putredinis DSM 17216]
 gi|167658141|gb|EDS02271.1| hypothetical protein ALIPUT_01791 [Alistipes putredinis DSM 17216]
          Length = 312

 Score = 44.3 bits (103), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 23/77 (29%), Positives = 40/77 (51%), Gaps = 4/77 (5%)

Query: 91  LTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVL 150
            T  W   R+  +   I+   + EL+   S+PV+V + EY+ IA  +       FIN VL
Sbjct: 232 FTRNWDVERIVFMDNLIMATAITELVSFPSIPVKVTLDEYIDIAKFYSTPGSSTFINGVL 291

Query: 151 DKV----SRKEEIKRSG 163
           DK+    + + ++K++G
Sbjct: 292 DKIVEALTEEGKLKKTG 308


>gi|120436864|ref|YP_862550.1| antitermination protein NusB [Gramella forsetii KT0803]
 gi|117579014|emb|CAL67483.1| antitermination protein NusB [Gramella forsetii KT0803]
          Length = 337

 Score = 44.3 bits (103), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 21/64 (32%), Positives = 37/64 (57%)

Query: 92  TEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLD 151
           T  W   R+  +   +++  + E ++  S+PV+V I+EY+ IA ++       FIN VLD
Sbjct: 258 TPNWDKDRIAEVDMVLIKMAICEFLKFTSIPVKVTINEYLEIAKEYSTPKSSIFINGVLD 317

Query: 152 KVSR 155
           K+S+
Sbjct: 318 KLSK 321


>gi|294670752|ref|ZP_06735614.1| hypothetical protein NEIELOOT_02461 [Neisseria elongata subsp.
           glycolytica ATCC 29315]
 gi|291307540|gb|EFE48783.1| hypothetical protein NEIELOOT_02461 [Neisseria elongata subsp.
           glycolytica ATCC 29315]
          Length = 143

 Score = 44.3 bits (103), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 49/162 (30%), Positives = 68/162 (41%), Gaps = 29/162 (17%)

Query: 10  LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF 69
           +K S RR  AR   VQALYQ  +   S  EI    +  R  AD        +   D + F
Sbjct: 1   MKTSPRRR-AREFTVQALYQAALNHASAPEIA---KNIREAAD--------FKRADADLF 48

Query: 70  RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSV------PV 123
             +  G          +I   L       R +  +  I R G+L L+ CH +      P 
Sbjct: 49  TALFFGAHGNSAEYMQIIRPLL------DRDEKDINPIER-GIL-LMACHELSAMPETPY 100

Query: 124 EVIISEYVCIAHDFFYGDEPKFINAVLDKVS---RKEEIKRS 162
            VII+E + +   F   D  KFIN +LDK+S   R  + KR+
Sbjct: 101 PVIINEAIEVTKTFGGTDSHKFINGILDKLSVQLRPNDPKRA 142


>gi|153814701|ref|ZP_01967369.1| hypothetical protein RUMTOR_00916 [Ruminococcus torques ATCC 27756]
 gi|317500231|ref|ZP_07958461.1| transcription antitermination factor NusB [Lachnospiraceae
           bacterium 8_1_57FAA]
 gi|331087539|ref|ZP_08336471.1| transcription antitermination factor NusB [Lachnospiraceae
           bacterium 3_1_46FAA]
 gi|145847732|gb|EDK24650.1| hypothetical protein RUMTOR_00916 [Ruminococcus torques ATCC 27756]
 gi|316898357|gb|EFV20398.1| transcription antitermination factor NusB [Lachnospiraceae
           bacterium 8_1_57FAA]
 gi|330401757|gb|EGG81335.1| transcription antitermination factor NusB [Lachnospiraceae
           bacterium 3_1_46FAA]
          Length = 135

 Score = 44.3 bits (103), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 25/77 (32%), Positives = 42/77 (54%), Gaps = 1/77 (1%)

Query: 81  QHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYG 140
           + ID L++   T  W  +R++ +  SILR  + E+     VP +V I+E V +A  F   
Sbjct: 59  EEIDGLLNENAT-GWKTTRMNKVDLSILRLALYEIKWDEDVPAKVAINEAVELAKRFGGD 117

Query: 141 DEPKFINAVLDKVSRKE 157
           +   F+N VL K +++E
Sbjct: 118 NSSSFVNGVLAKFAKQE 134


>gi|315604170|ref|ZP_07879236.1| conserved hypothetical protein [Actinomyces sp. oral taxon 180 str.
           F0310]
 gi|315313876|gb|EFU61927.1| conserved hypothetical protein [Actinomyces sp. oral taxon 180 str.
           F0310]
          Length = 208

 Score = 44.3 bits (103), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 27/84 (32%), Positives = 41/84 (48%), Gaps = 1/84 (1%)

Query: 72  IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
           II GV D  + ID LIS+         R+  +  +++R  V E++E   V   ++I E V
Sbjct: 60  IIGGVADNLRRIDSLISAH-ARVPGLDRIAAVDLAVMRVAVWEMLENDEVSPIIVIDEAV 118

Query: 132 CIAHDFFYGDEPKFINAVLDKVSR 155
            I         P F+NAVLD + +
Sbjct: 119 SIVRSISTDTSPAFVNAVLDAIRK 142


>gi|296875879|ref|ZP_06899940.1| transcription antitermination factor NusB [Streptococcus
           parasanguinis ATCC 15912]
 gi|296433120|gb|EFH18906.1| transcription antitermination factor NusB [Streptococcus
           parasanguinis ATCC 15912]
          Length = 143

 Score = 44.3 bits (103), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 30/96 (31%), Positives = 48/96 (50%), Gaps = 2/96 (2%)

Query: 63  HVDLEWFRV-IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSV 121
            VDL  F + ++ GV   K  +D  I   L   W+  RL ++  +ILR G+ E+ E  + 
Sbjct: 49  EVDLPAFLMNLVTGVYQSKDQLDQQIGQHLKAGWTVERLTLVEKNILRLGIYEITEFDT- 107

Query: 122 PVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKE 157
           P  V ++E V +A  F      +F+N VL +   +E
Sbjct: 108 PQIVAVNEAVELAKAFSDEISSRFVNGVLSQFVTEE 143


>gi|184155740|ref|YP_001844080.1| transcription antitermination protein NusB [Lactobacillus fermentum
           IFO 3956]
 gi|238692985|sp|B2GD68|NUSB_LACF3 RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|183227084|dbj|BAG27600.1| transcription termination factor [Lactobacillus fermentum IFO 3956]
          Length = 139

 Score = 44.3 bits (103), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 33/116 (28%), Positives = 49/116 (42%), Gaps = 8/116 (6%)

Query: 47  YRFCADTELDVESVY-----LHVDLE---WFRVIIHGVMDRKQHIDLLISSCLTEKWSFS 98
           +   +D E+D E +Y     L    E   +   ++ GV + +   D  I   L   WS S
Sbjct: 17  FAMVSDPEVDREQLYKELLPLAPQEEVPAYLEELVTGVSEHQAEFDQEIEGSLAAGWSLS 76

Query: 99  RLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVS 154
           R++     ILR  + E+     VPV V I E + +   F      KFIN VL  + 
Sbjct: 77  RVEKPNLIILRLALYEMKYVDDVPVAVAIDEALEMTKKFSDDKSRKFINGVLGHIG 132


>gi|327313923|ref|YP_004329360.1| transcription antitermination factor NusB [Prevotella denticola
           F0289]
 gi|326944316|gb|AEA20201.1| transcription antitermination factor NusB [Prevotella denticola
           F0289]
          Length = 359

 Score = 44.3 bits (103), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 25/87 (28%), Positives = 44/87 (50%), Gaps = 5/87 (5%)

Query: 69  FRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIIS 128
           FR  I    D + ++     S  +  W FSRL  +   I++  + E++   ++PV V I+
Sbjct: 215 FRATILNADDYQHYM-----SESSRNWDFSRLAYMDVIIMQIAIAEMLTFPNIPVTVTIN 269

Query: 129 EYVCIAHDFFYGDEPKFINAVLDKVSR 155
           EYV +A  +       +IN +LD ++R
Sbjct: 270 EYVDLAKLYSTPRSGGYINGMLDTIAR 296


>gi|325858411|ref|ZP_08172573.1| transcription antitermination factor NusB [Prevotella denticola
           CRIS 18C-A]
 gi|325483049|gb|EGC86037.1| transcription antitermination factor NusB [Prevotella denticola
           CRIS 18C-A]
          Length = 359

 Score = 44.3 bits (103), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 25/87 (28%), Positives = 44/87 (50%), Gaps = 5/87 (5%)

Query: 69  FRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIIS 128
           FR  I    D + ++     S  +  W FSRL  +   I++  + E++   ++PV V I+
Sbjct: 215 FRATILNADDYQHYM-----SESSRNWDFSRLAYMDVIIMQIAIAEMLTFPNIPVTVTIN 269

Query: 129 EYVCIAHDFFYGDEPKFINAVLDKVSR 155
           EYV +A  +       +IN +LD ++R
Sbjct: 270 EYVDLAKLYSTPRSGGYINGMLDTIAR 296


>gi|266620364|ref|ZP_06113299.1| transcription antitermination factor NusB [Clostridium hathewayi
           DSM 13479]
 gi|288868036|gb|EFD00335.1| transcription antitermination factor NusB [Clostridium hathewayi
           DSM 13479]
          Length = 147

 Score = 44.3 bits (103), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 26/86 (30%), Positives = 42/86 (48%), Gaps = 1/86 (1%)

Query: 68  WFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVII 127
           + +     VM +   +D  I + + E W   R+     +ILR  + E++    VP +V I
Sbjct: 62  YLKTKTEAVMRKIPELDEKIDA-VAEGWKTKRMGKAELTILRLALYEILYDEEVPEKVAI 120

Query: 128 SEYVCIAHDFFYGDEPKFINAVLDKV 153
           +E V +A  F   + P FIN VL K+
Sbjct: 121 NEAVELAKRFGGNEAPAFINGVLAKL 146


>gi|220909702|ref|YP_002485013.1| transcription antitermination protein NusB [Cyanothece sp. PCC
           7425]
 gi|254772629|sp|B8HYJ8|NUSB_CYAP4 RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|219866313|gb|ACL46652.1| NusB antitermination factor [Cyanothece sp. PCC 7425]
          Length = 209

 Score = 44.3 bits (103), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 29/93 (31%), Positives = 48/93 (51%), Gaps = 2/93 (2%)

Query: 72  IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
           I+  V+  +  ID L+ + L + W F+RL  I  +ILR  V E++   + P +V I+E V
Sbjct: 119 ILKQVLTHRTAIDHLLETALVD-WQFNRLAQIDRNILRIAVAEILYLKT-PTQVTINEAV 176

Query: 132 CIAHDFFYGDEPKFINAVLDKVSRKEEIKRSGC 164
            +A  +   D  +F+N VL +     E +  G 
Sbjct: 177 ELAKRYSDEDGYRFVNGVLRRTIPHLEAQAQGT 209


>gi|315634386|ref|ZP_07889673.1| transcription termination/antitermination factor NusB
           [Aggregatibacter segnis ATCC 33393]
 gi|315476976|gb|EFU67721.1| transcription termination/antitermination factor NusB
           [Aggregatibacter segnis ATCC 33393]
          Length = 102

 Score = 44.3 bits (103), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 31/102 (30%), Positives = 51/102 (50%), Gaps = 6/102 (5%)

Query: 53  TELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGV 112
           TE D++ V    D  +FR +    ++  + ++  +   L        LD I  +ILR  V
Sbjct: 2   TEQDMKGV----DTPYFRKLFRQTVENVEAVERTMQGYLDR--GLEELDPIEKAILRLAV 55

Query: 113 LELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVS 154
            EL     VP +V+I+E + +A  F   +  K+IN VLDK++
Sbjct: 56  YELQFEADVPYKVVINEAIEVAKVFGADESHKYINGVLDKIA 97


>gi|255323400|ref|ZP_05364531.1| transcription antitermination factor NusB [Campylobacter showae
           RM3277]
 gi|255299437|gb|EET78723.1| transcription antitermination factor NusB [Campylobacter showae
           RM3277]
          Length = 131

 Score = 44.3 bits (103), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 24/80 (30%), Positives = 43/80 (53%), Gaps = 2/80 (2%)

Query: 72  IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
           + HG+++ +  +D L+++ L E W  + +  I  ++LR G  E+ +       VII+E +
Sbjct: 48  LFHGILEHEDELDALLNARLKE-WKINEIGSIERAVLRLGAYEM-KFTPTDKAVIINEGI 105

Query: 132 CIAHDFFYGDEPKFINAVLD 151
            +  +      PKFIN VLD
Sbjct: 106 ELGKELGGDSAPKFINGVLD 125


>gi|291518519|emb|CBK73740.1| ribosomal RNA small subunit methyltransferase RsmB [Butyrivibrio
           fibrisolvens 16/4]
          Length = 423

 Score = 44.3 bits (103), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 23/86 (26%), Positives = 46/86 (53%), Gaps = 2/86 (2%)

Query: 72  IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
           +++G ++RK  +D +I S    K    ++  ++ +++R GV E+    +VP     +EYV
Sbjct: 49  LVNGTVERKLQLDYIIDSF--SKTKVKKMKPLIRTVMRLGVYEIYYMDAVPDSATCNEYV 106

Query: 132 CIAHDFFYGDEPKFINAVLDKVSRKE 157
            +A    +     F+N VL  +SR++
Sbjct: 107 KLAKKRGFAGLSGFVNGVLRNISREK 132


>gi|225025922|ref|ZP_03715114.1| hypothetical protein EUBHAL_00158 [Eubacterium hallii DSM 3353]
 gi|224956708|gb|EEG37917.1| hypothetical protein EUBHAL_00158 [Eubacterium hallii DSM 3353]
          Length = 133

 Score = 44.3 bits (103), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 27/82 (32%), Positives = 42/82 (51%), Gaps = 1/82 (1%)

Query: 73  IHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVC 132
           I  ++ R   ID  I S + E W   RL     +ILR  V E+    ++P  V I+E V 
Sbjct: 53  IGSILKRLPEIDEQIHS-ICEGWRLERLGKPELAILRLAVYEITNDANIPTGVAINEAVE 111

Query: 133 IAHDFFYGDEPKFINAVLDKVS 154
           +A  +   + P+F+N VL K++
Sbjct: 112 LAKIYCSEEAPRFVNGVLAKLA 133


>gi|301345751|ref|ZP_07226492.1| transcription antitermination protein NusB [Acinetobacter baumannii
           AB056]
 gi|301512968|ref|ZP_07238205.1| transcription antitermination protein NusB [Acinetobacter baumannii
           AB058]
 gi|301596175|ref|ZP_07241183.1| transcription antitermination protein NusB [Acinetobacter baumannii
           AB059]
          Length = 135

 Score = 43.9 bits (102), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 26/89 (29%), Positives = 46/89 (51%), Gaps = 2/89 (2%)

Query: 64  VDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPV 123
           VDL ++  ++  V+ + + +D L+   L  +     LD +  + LR G  EL +   +P 
Sbjct: 49  VDLNYYHELLTQVIAQHEDLDALLIPVLDRE--IDALDGVELATLRLGAYELRDHLEIPY 106

Query: 124 EVIISEYVCIAHDFFYGDEPKFINAVLDK 152
            V++ E + +A  F   D  K+IN VLD+
Sbjct: 107 RVVLDEAIELAKHFGGADSHKYINGVLDR 135


>gi|291544835|emb|CBL17944.1| transcription antitermination factor NusB [Ruminococcus sp. 18P13]
          Length = 138

 Score = 43.9 bits (102), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 22/89 (24%), Positives = 46/89 (51%), Gaps = 1/89 (1%)

Query: 67  EWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVI 126
           +  R ++ G +D+ + +D +IS   + K   SR+  I  ++LR  + E++     P+   
Sbjct: 44  DQVRELVEGTLDKTEELDRIISE-YSSKRGLSRIAKINIAVLRIALYEILYDEKTPMNAA 102

Query: 127 ISEYVCIAHDFFYGDEPKFINAVLDKVSR 155
           I+E V ++  +   ++  F+N VL   +R
Sbjct: 103 INEAVQLSQTYAQQEDVSFVNGVLGAYAR 131


>gi|282879285|ref|ZP_06288030.1| transcription antitermination factor NusB [Prevotella buccalis ATCC
           35310]
 gi|281298567|gb|EFA90991.1| transcription antitermination factor NusB [Prevotella buccalis ATCC
           35310]
          Length = 333

 Score = 43.9 bits (102), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 22/70 (31%), Positives = 36/70 (51%)

Query: 86  LISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKF 145
           L  S  +  W FSRL  +   I++  + E++   ++PV V I EYV  A  +       +
Sbjct: 227 LYMSETSRNWDFSRLAYMDVVIMQIAIAEMLTFPNIPVSVTIYEYVNQAKRYSTTKSGGY 286

Query: 146 INAVLDKVSR 155
           IN +LD ++R
Sbjct: 287 INGMLDSIAR 296


>gi|319950547|ref|ZP_08024457.1| transcription antitermination protein NusB [Dietzia cinnamea P4]
 gi|319435797|gb|EFV91007.1| transcription antitermination protein NusB [Dietzia cinnamea P4]
          Length = 189

 Score = 43.9 bits (102), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 28/84 (33%), Positives = 43/84 (51%), Gaps = 2/84 (2%)

Query: 72  IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELI-ECHSVPVEVIISEY 130
           I+ GV +R   +D  IS  L E W+  RL  +  ++LRA   EL+     V   V+I + 
Sbjct: 61  IVTGVAERLDRLDSTISEHLRE-WTLERLPAVDRAVLRAAAWELLFGSDEVDAAVVIDQA 119

Query: 131 VCIAHDFFYGDEPKFINAVLDKVS 154
           V +  D        ++NAVLD+V+
Sbjct: 120 VLLVSDLSAEKSVPYVNAVLDRVA 143


>gi|261417120|ref|YP_003250803.1| NusB antitermination factor [Fibrobacter succinogenes subsp.
           succinogenes S85]
 gi|261373576|gb|ACX76321.1| NusB antitermination factor [Fibrobacter succinogenes subsp.
           succinogenes S85]
 gi|302325378|gb|ADL24579.1| N utilization substance protein B [Fibrobacter succinogenes subsp.
           succinogenes S85]
          Length = 146

 Score = 43.9 bits (102), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 32/133 (24%), Positives = 65/133 (48%), Gaps = 14/133 (10%)

Query: 19  ARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV-IIHGVM 77
           AR+ A+Q LY ++I G +  + +               +E+  L  +++ + + ++  V+
Sbjct: 9   ARVFAMQLLYAMEISGGTVADALPGV------------LEAQPLQDNMKKYGMKLVDLVL 56

Query: 78  DRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDF 137
             K  +D  I +C +  W   R+  +   +LR  ++EL+    +P++V+ISE V +A  F
Sbjct: 57  AHKAELDSEIEAC-SAHWGIERMATLDRIVLRIAMVELLYVPEIPMKVVISEAVQVAAKF 115

Query: 138 FYGDEPKFINAVL 150
                  F+N +L
Sbjct: 116 STDSSGTFVNGLL 128


>gi|91788748|ref|YP_549700.1| transcription antitermination protein NusB [Polaromonas sp. JS666]
 gi|119390795|sp|Q129J0|NUSB_POLSJ RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|91697973|gb|ABE44802.1| NusB antitermination factor [Polaromonas sp. JS666]
          Length = 187

 Score = 43.9 bits (102), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 36/140 (25%), Positives = 65/140 (46%), Gaps = 15/140 (10%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLH-VDLEWFRVIIH 74
           R  AR  A+QALYQ  ++G +  + I  +             + V  H  D   +  ++H
Sbjct: 48  RTRAREFALQALYQ-HLVGRNDADSIDAFTR-----------DLVGFHKADSAHYDALLH 95

Query: 75  GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134
           G ++    +D +I+  L      + +  +  ++L  G  E  +C  VP  V+I+E + +A
Sbjct: 96  GCIEGASALDAVITPLLDR--PMAEISPVEHAVLWMGAYEFRQCLDVPYRVVINECIELA 153

Query: 135 HDFFYGDEPKFINAVLDKVS 154
             F   D  K++N VL K++
Sbjct: 154 KAFGGTDGHKYVNGVLHKMA 173


>gi|146299958|ref|YP_001194549.1| transcription termination factor-like protein [Flavobacterium
           johnsoniae UW101]
 gi|146154376|gb|ABQ05230.1| Transcription termination factor-like protein [Flavobacterium
           johnsoniae UW101]
          Length = 303

 Score = 43.9 bits (102), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 34/138 (24%), Positives = 64/138 (46%), Gaps = 12/138 (8%)

Query: 30  IDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF------RVIIHGVMDRKQHI 83
           +D I    T II + +  +     E  V  +Y  V+ + F      R +++  +  K++ 
Sbjct: 162 VDDIPVVNTHIIKQLKAIKTDNPDEFRVPKLYKDVEDKDFAKDLFRRTVLNEAVLAKEYD 221

Query: 84  DLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEP 143
           D       T  W   R+  I   IL+  + E ++  S+PV+V ++EY+ IA ++      
Sbjct: 222 DK------TPNWDSERIAEIDTIILKMAICEFLKFPSIPVKVTLNEYLEIAKEYSTPKSS 275

Query: 144 KFINAVLDKVSRKEEIKR 161
            FIN +LD + ++ E  +
Sbjct: 276 IFINGILDNLVKELEASK 293


>gi|225075389|ref|ZP_03718588.1| hypothetical protein NEIFLAOT_00394 [Neisseria flavescens
           NRL30031/H210]
 gi|224953207|gb|EEG34416.1| hypothetical protein NEIFLAOT_00394 [Neisseria flavescens
           NRL30031/H210]
          Length = 142

 Score = 43.9 bits (102), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 50/163 (30%), Positives = 69/163 (42%), Gaps = 30/163 (18%)

Query: 10  LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF 69
           +K   RR  AR  AVQA+YQ  I   +  EI             EL   S   ++D E F
Sbjct: 1   MKSPRRR--ARELAVQAIYQAGINKTAAPEIAKNIH--------ELSQTS---NMDEELF 47

Query: 70  RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSV------PV 123
             +  G           IS  L       R +  L  I RA VL L+ CH +      P 
Sbjct: 48  NKLFFGAQTHAAEYMEKISPLL------DRDEKDLSPIERA-VL-LVACHELSTMPETPY 99

Query: 124 EVIISEYVCIAHDFFYGDEPKFINAVLDKVS---RKEEIKRSG 163
            VII+E + +   F   D  KF+N +LD+++   R +E +R G
Sbjct: 100 PVIINEAIEVTKTFGGTDGHKFVNGILDQLASRIRPDEPRRKG 142


>gi|285019596|ref|YP_003377307.1| transcription termination factor NusB [Xanthomonas albilineans GPE
           PC73]
 gi|283474814|emb|CBA17313.1| putative transcription termination factor nusb protein [Xanthomonas
           albilineans]
          Length = 155

 Score = 43.9 bits (102), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 31/130 (23%), Positives = 57/130 (43%), Gaps = 13/130 (10%)

Query: 25  QALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHID 84
           QA+Y   I G +   +I+++             E  +   DL +F  ++ GV+  +  +D
Sbjct: 29  QAIYAWQISGGNAQHVIAQFAH-----------EQAHEIADLVYFENLVEGVLKHRAELD 77

Query: 85  LLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPK 144
             +   L    +   +D I  ++LR    EL+    VP  V+I+E +  A  F       
Sbjct: 78  AALVGYLDR--TVEEVDAIERAVLRLAAYELLYRMDVPYRVVINEAIETAKRFGSEHGHT 135

Query: 145 FINAVLDKVS 154
           ++N VLD+ +
Sbjct: 136 YVNGVLDRAA 145


>gi|193214274|ref|YP_001995473.1| NusB antitermination factor [Chloroherpeton thalassium ATCC 35110]
 gi|238692701|sp|B3QV72|NUSB_CHLT3 RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|193087751|gb|ACF13026.1| NusB antitermination factor [Chloroherpeton thalassium ATCC 35110]
          Length = 211

 Score = 43.9 bits (102), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 27/94 (28%), Positives = 48/94 (51%), Gaps = 3/94 (3%)

Query: 72  IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
           II+ V+   Q ID  I+    + W  +R+ +I  +++R  + E++    VP +V I+E +
Sbjct: 51  IINSVIQNIQDIDTHIAKH-ADNWELNRMAIIDKNLMRIAIAEMLYLDDVPPKVSINEAI 109

Query: 132 CIAHDFFYGDEPKFINAVLDKVSRKEEIKRSGCV 165
            IA  +      KF+N +LD      E+K  G +
Sbjct: 110 EIAKRYSTDKSSKFVNGILDATY--NEVKSKGVL 141


>gi|224824226|ref|ZP_03697334.1| NusB antitermination factor [Lutiella nitroferrum 2002]
 gi|224603645|gb|EEG09820.1| NusB antitermination factor [Lutiella nitroferrum 2002]
          Length = 148

 Score = 43.9 bits (102), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 37/145 (25%), Positives = 62/145 (42%), Gaps = 14/145 (9%)

Query: 10  LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF 69
           +K S RR  AR  AVQ +Y+ ++       +I ++          L     ++  D   F
Sbjct: 1   MKTSRRR--AREFAVQGIYEWELNPDRPASLIEKH----------LRENDYFVKADEALF 48

Query: 70  RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISE 129
           R ++ GV+     +   I      +     +  +  ++L    LEL +    P  VII+E
Sbjct: 49  RTLLFGVLKDAAELSPKIDRYY--ERPADEVSPVERAVLLMAALELTQHPETPYPVIINE 106

Query: 130 YVCIAHDFFYGDEPKFINAVLDKVS 154
            + I   F   D  KF+N VLDK++
Sbjct: 107 AIEITKTFGGTDGHKFVNGVLDKLA 131


>gi|303238065|ref|ZP_07324606.1| transcription antitermination factor NusB [Prevotella disiens
           FB035-09AN]
 gi|302481761|gb|EFL44815.1| transcription antitermination factor NusB [Prevotella disiens
           FB035-09AN]
          Length = 355

 Score = 43.9 bits (102), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 21/67 (31%), Positives = 37/67 (55%)

Query: 89  SCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINA 148
           S  +  W FSRL  +   I++  + E++   ++PV V I+EYV +A  +       +IN 
Sbjct: 230 SETSRNWDFSRLAYMDIVIMQIAIAEMLNFPNIPVSVSINEYVELAKLYSTPRSGSYING 289

Query: 149 VLDKVSR 155
           +LD ++R
Sbjct: 290 MLDAIAR 296


>gi|319951926|ref|YP_004163193.1| nusb antitermination factor [Cellulophaga algicola DSM 14237]
 gi|319420586|gb|ADV47695.1| NusB antitermination factor [Cellulophaga algicola DSM 14237]
          Length = 315

 Score = 43.9 bits (102), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 23/77 (29%), Positives = 41/77 (53%), Gaps = 2/77 (2%)

Query: 92  TEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLD 151
           T  W   R+  I   +L+  + EL+   S+P  V I+EY+ +A ++       FIN +LD
Sbjct: 236 TPNWDKDRIADIDAILLKMAIAELLNFPSIPERVTINEYLELAKEYSTPKSSTFINGILD 295

Query: 152 KVSRKEEIKRSGCVSAI 168
           K+ +  E ++ G ++ I
Sbjct: 296 KLVK--EYQQEGKLNKI 310


>gi|15837557|ref|NP_298245.1| transcription antitermination protein NusB [Xylella fastidiosa
           9a5c]
 gi|22095972|sp|Q9PES3|NUSB_XYLFA RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|9105883|gb|AAF83765.1|AE003934_7 transcription termination factor [Xylella fastidiosa 9a5c]
          Length = 157

 Score = 43.9 bits (102), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 30/105 (28%), Positives = 50/105 (47%), Gaps = 5/105 (4%)

Query: 58  ESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIE 117
           E  Y   DL +F  ++ GV+     +D  ++  L    +   +D I  ++LR G  EL+ 
Sbjct: 53  EQAYEVADLAYFEDLVEGVLTHCAELDEKLTPYLDR--TIEEVDAIERAVLRLGAYELLY 110

Query: 118 CHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVS---RKEEI 159
              VP  V+I+E +  A  F       ++N VLD+ +   RK E+
Sbjct: 111 RQDVPYRVVINEAIMTAKRFGSKYGHTYVNGVLDRAALALRKVEV 155


>gi|317484770|ref|ZP_07943669.1| transcription antitermination factor NusB [Bilophila wadsworthia
           3_1_6]
 gi|316923977|gb|EFV45164.1| transcription antitermination factor NusB [Bilophila wadsworthia
           3_1_6]
          Length = 146

 Score = 43.9 bits (102), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 24/87 (27%), Positives = 44/87 (50%), Gaps = 1/87 (1%)

Query: 72  IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
           ++ GV    +++D +I    ++ W   RL  I  ++LR  V E++    VP +V I+E +
Sbjct: 49  LVEGVWSNVKNLDSVIER-FSQNWRVDRLGKIELTLLRLAVFEMLYRADVPPKVAINEAL 107

Query: 132 CIAHDFFYGDEPKFINAVLDKVSRKEE 158
            ++  F       FIN +LD   + +E
Sbjct: 108 ELSTRFGDAKAKSFINGILDAAIKAQE 134


>gi|317056629|ref|YP_004105096.1| NusB antitermination factor [Ruminococcus albus 7]
 gi|315448898|gb|ADU22462.1| NusB antitermination factor [Ruminococcus albus 7]
          Length = 137

 Score = 43.9 bits (102), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 25/95 (26%), Positives = 51/95 (53%), Gaps = 2/95 (2%)

Query: 61  YLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHS 120
           ++ VD E  + ++ G+ +++  +D +IS   ++K + SR+  +  S+LR  + E +    
Sbjct: 38  FISVDDE-VKALVRGIFEKQDELDSIISKY-SDKRAVSRIPKVDLSVLRLAIYEALYDDK 95

Query: 121 VPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSR 155
           VPV V ISE V +   +    +  F+N +L   ++
Sbjct: 96  VPVNVAISEAVSLTEKYALEPDIAFVNGLLGSFAK 130


>gi|313901605|ref|ZP_07835044.1| NusB antitermination factor [Thermaerobacter subterraneus DSM
           13965]
 gi|313468135|gb|EFR63610.1| NusB antitermination factor [Thermaerobacter subterraneus DSM
           13965]
          Length = 214

 Score = 43.9 bits (102), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 29/94 (30%), Positives = 46/94 (48%), Gaps = 3/94 (3%)

Query: 72  IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECH--SVPVEVIISE 129
           +  GV   +  ID LI+    + W   RL  +  +ILR G+ EL+      VP  V I+E
Sbjct: 58  LAGGVTRHRLDIDGLIARYARD-WDLERLARVDRNILRLGIYELLYAGRPDVPPPVAINE 116

Query: 130 YVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRSG 163
            V +A  +   D  +FIN +L +++R   +   G
Sbjct: 117 AVELAKRYSSEDAARFINGILGQLARDRGLAGEG 150


>gi|289643066|ref|ZP_06475197.1| NusB antitermination factor [Frankia symbiont of Datisca glomerata]
 gi|289507110|gb|EFD28078.1| NusB antitermination factor [Frankia symbiont of Datisca glomerata]
          Length = 99

 Score = 43.9 bits (102), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 25/77 (32%), Positives = 40/77 (51%), Gaps = 1/77 (1%)

Query: 72  IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
           ++ GV++R   ID ++S    E+W+  R+  +  +ILR G LEL+    +P  V I E V
Sbjct: 8   LVEGVVERLADIDEMLSDH-AEEWTLERMPPVDRNILRIGALELLWREDIPDGVAIDEAV 66

Query: 132 CIAHDFFYGDEPKFINA 148
            +A        P F+N 
Sbjct: 67  ALAGLVSTERSPVFVNG 83


>gi|255066867|ref|ZP_05318722.1| transcription antitermination factor NusB [Neisseria sicca ATCC
           29256]
 gi|255048942|gb|EET44406.1| transcription antitermination factor NusB [Neisseria sicca ATCC
           29256]
          Length = 143

 Score = 43.9 bits (102), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 45/162 (27%), Positives = 61/162 (37%), Gaps = 26/162 (16%)

Query: 10  LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF 69
           +K   RR  AR  AVQALYQ  I   +  EI    +            +  +   D E F
Sbjct: 1   MKTPRRR--ARELAVQALYQAGINNTAAPEIAKNIQD-----------QPDFAKADEELF 47

Query: 70  RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVL----ELIECHSVPVEV 125
             +  G           I   L       R +  L  I RA +L    EL      P  V
Sbjct: 48  NKLFFGTHTHAAEYIQQIRPLL------DRDEKDLSPIERAVLLMACHELSAMPETPYPV 101

Query: 126 IISEYVCIAHDFFYGDEPKFINAVLDKVS---RKEEIKRSGC 164
           II+E + +   F   D  KF+N +LDK++   R  + KR   
Sbjct: 102 IINEAIEVTKTFGGTDGHKFVNGILDKLAAQLRPNDPKRGNA 143


>gi|291562672|emb|CBL41488.1| transcription antitermination factor NusB [butyrate-producing
           bacterium SS3/4]
          Length = 139

 Score = 43.5 bits (101), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 25/84 (29%), Positives = 43/84 (51%), Gaps = 1/84 (1%)

Query: 73  IHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVC 132
           +  +M+    ID  I+  + E W   R+  +  +ILR  V E+     +P +V I+E V 
Sbjct: 55  VEKIMELIPEIDEKINE-IAEGWRTRRMGKVELTILRLAVFEMKYDEEIPEKVAINEAVE 113

Query: 133 IAHDFFYGDEPKFINAVLDKVSRK 156
           +A  F   + P F+N +L K+ +K
Sbjct: 114 LAKKFGGDEAPAFVNGILAKLIQK 137


>gi|302866812|ref|YP_003835449.1| transcription antitermination factor NusB [Micromonospora
           aurantiaca ATCC 27029]
 gi|315503227|ref|YP_004082114.1| nusb antitermination factor [Micromonospora sp. L5]
 gi|302569671|gb|ADL45873.1| transcription antitermination factor NusB [Micromonospora
           aurantiaca ATCC 27029]
 gi|315409846|gb|ADU07963.1| NusB antitermination factor [Micromonospora sp. L5]
          Length = 144

 Score = 43.5 bits (101), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 24/83 (28%), Positives = 42/83 (50%), Gaps = 1/83 (1%)

Query: 72  IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
           ++ GV      ID  I+S   E W+  R+ ++  ++ R  V EL+    +   V ISE V
Sbjct: 58  LVEGVAAHLDRIDETIASY-AEGWTLERMPVVDRNLARIAVYELLYVDEIDDAVAISEAV 116

Query: 132 CIAHDFFYGDEPKFINAVLDKVS 154
            +A      D P+F+N +L +++
Sbjct: 117 ELARQMSTDDSPRFLNGILGRIA 139


>gi|20807741|ref|NP_622912.1| transcription antitermination protein NusB [Thermoanaerobacter
           tengcongensis MB4]
 gi|22095940|sp|Q8RAD1|NUSB_THETN RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|20516294|gb|AAM24516.1| Transcription termination factor [Thermoanaerobacter tengcongensis
           MB4]
          Length = 140

 Score = 43.5 bits (101), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 35/141 (24%), Positives = 60/141 (42%), Gaps = 14/141 (9%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           R  AR   V+ LYQ D+      +I   +       + +            E+    + G
Sbjct: 3   RTEAREWVVKMLYQYDVSKLPLEKIFENFYEEHDPGEQK------------EYIEGTVRG 50

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
            ++  + ID  I    ++ W   R+  I  +ILR  + E++   ++PV + I+E V IA 
Sbjct: 51  TVEHLEEIDREIEK-YSKDWPLYRMPRIDLAILRCSMYEML-YGNIPVSISINEAVEIAK 108

Query: 136 DFFYGDEPKFINAVLDKVSRK 156
            +   D P FIN +L    R+
Sbjct: 109 KYSTDDSPSFINGLLGAFVRE 129


>gi|225010642|ref|ZP_03701112.1| NusB antitermination factor [Flavobacteria bacterium MS024-3C]
 gi|225005195|gb|EEG43147.1| NusB antitermination factor [Flavobacteria bacterium MS024-3C]
          Length = 315

 Score = 43.5 bits (101), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 26/77 (33%), Positives = 41/77 (53%), Gaps = 2/77 (2%)

Query: 92  TEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLD 151
           T KW   R+  I   +L+  + EL+   S+PV V I+EY+ IA ++       FIN +LD
Sbjct: 236 TPKWDKDRIADIDGILLKMSICELLFFPSIPVRVTINEYLEIAKEYSTPKSSIFINGILD 295

Query: 152 KVSRKEEIKRSGCVSAI 168
            +S+  E K  G +  +
Sbjct: 296 SLSK--EYKDQGRLEKV 310


>gi|330995945|ref|ZP_08319840.1| transcription antitermination factor NusB [Paraprevotella
           xylaniphila YIT 11841]
 gi|329574284|gb|EGG55859.1| transcription antitermination factor NusB [Paraprevotella
           xylaniphila YIT 11841]
          Length = 310

 Score = 43.5 bits (101), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 24/92 (26%), Positives = 49/92 (53%), Gaps = 1/92 (1%)

Query: 65  DLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVE 124
           D E+   +    +   ++   LIS   T+ W F+R+ ++   I++  + E++   ++P+ 
Sbjct: 208 DREFAHRLFRNTLLNAEYYRKLISDN-TKNWEFNRIALMDLLIMQIALAEILTFPNIPLN 266

Query: 125 VIISEYVCIAHDFFYGDEPKFINAVLDKVSRK 156
           V ++EYV IA  +       ++N +LD VS+K
Sbjct: 267 VSLNEYVDIAKIYSTPRSGAYVNGLLDAVSKK 298


>gi|150024632|ref|YP_001295458.1| N utilization substance protein B [Flavobacterium psychrophilum
           JIP02/86]
 gi|149771173|emb|CAL42640.1| N utilization substance protein B homolog (NusBprotein)
           [Flavobacterium psychrophilum JIP02/86]
          Length = 303

 Score = 43.5 bits (101), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 22/76 (28%), Positives = 43/76 (56%), Gaps = 4/76 (5%)

Query: 92  TEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLD 151
           T  W   R+  I   IL+  + E ++  S+PV+V I+EY+ +A ++       FIN +LD
Sbjct: 224 TPNWEADRIAEIDTIILKMAICEFLKFPSIPVKVTINEYLELAKEYSTPKSSIFINGILD 283

Query: 152 KVSRK----EEIKRSG 163
            + ++    +++K++G
Sbjct: 284 NLVKEFESNDKLKKTG 299


>gi|301059426|ref|ZP_07200347.1| leucine--tRNA ligase [delta proteobacterium NaphS2]
 gi|300446462|gb|EFK10306.1| leucine--tRNA ligase [delta proteobacterium NaphS2]
          Length = 1011

 Score = 43.5 bits (101), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 25/84 (29%), Positives = 41/84 (48%), Gaps = 1/84 (1%)

Query: 70  RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISE 129
           R ++ GV  RK  +D +I    ++ W   R+  +  SILR    E++    +P  V + E
Sbjct: 38  RDLVSGVCQRKTILDRVIGRS-SKHWRLERMARLDRSILRLATYEMLYLEDIPPRVSLDE 96

Query: 130 YVCIAHDFFYGDEPKFINAVLDKV 153
            V +   F   D  ++IN VLD +
Sbjct: 97  AVELGKRFGSEDSGRYINGVLDNI 120


>gi|254303389|ref|ZP_04970747.1| N utilization substance protein B [Fusobacterium nucleatum subsp.
           polymorphum ATCC 10953]
 gi|148323581|gb|EDK88831.1| N utilization substance protein B [Fusobacterium nucleatum subsp.
           polymorphum ATCC 10953]
          Length = 155

 Score = 43.5 bits (101), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 26/92 (28%), Positives = 51/92 (55%), Gaps = 6/92 (6%)

Query: 66  LEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEV 125
           LE+ R  I+G+ +   +I  +I    T+ W+++R+ +I  ++L     E     + P+EV
Sbjct: 63  LEFIRSSINGIAENYDNIKDIIKKN-TKNWAYARIGVIERALLIVATYEF-SFKNTPIEV 120

Query: 126 IISEYVCIAHDFFYGDEP--KFINAVLDKVSR 155
           I +E V +A +  YG+E   +F+N +L  + +
Sbjct: 121 IANEIVELAKE--YGNEKSYEFVNGILANIEK 150


>gi|303245564|ref|ZP_07331847.1| NusB antitermination factor [Desulfovibrio fructosovorans JJ]
 gi|302492827|gb|EFL52692.1| NusB antitermination factor [Desulfovibrio fructosovorans JJ]
          Length = 177

 Score = 43.5 bits (101), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 25/86 (29%), Positives = 47/86 (54%), Gaps = 5/86 (5%)

Query: 72  IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
           ++ GV   ++ +D  I    ++ W  SR+  +  +ILR  V E++    +P+ V ++E +
Sbjct: 82  LVSGVWTNQRELDAHIVR-FSKNWKLSRIAKVELTILRLAVYEILYRSDIPLRVALNEAI 140

Query: 132 CIAHDFFYGDEP--KFINAVLDKVSR 155
            +A    YGDE    FIN +LD +++
Sbjct: 141 ELAKR--YGDENSRNFINGILDAIAK 164


>gi|332877528|ref|ZP_08445275.1| transcription antitermination factor NusB [Capnocytophaga sp. oral
           taxon 329 str. F0087]
 gi|332684634|gb|EGJ57484.1| transcription antitermination factor NusB [Capnocytophaga sp. oral
           taxon 329 str. F0087]
          Length = 310

 Score = 43.5 bits (101), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 24/92 (26%), Positives = 49/92 (53%), Gaps = 1/92 (1%)

Query: 65  DLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVE 124
           D E+   +    +   ++   LIS   T+ W F+R+ ++   I++  + E++   ++P+ 
Sbjct: 208 DREFAHRLFRNTLLNAEYYRKLISDN-TKNWEFNRIALMDLLIMQIALAEILTFPNIPLN 266

Query: 125 VIISEYVCIAHDFFYGDEPKFINAVLDKVSRK 156
           V ++EYV IA  +       ++N +LD VS+K
Sbjct: 267 VSLNEYVDIAKIYSTPRSGAYVNGLLDAVSKK 298


>gi|34762362|ref|ZP_00143364.1| N utilization substance protein B [Fusobacterium nucleatum subsp.
           vincentii ATCC 49256]
 gi|27887944|gb|EAA25010.1| N utilization substance protein B [Fusobacterium nucleatum subsp.
           vincentii ATCC 49256]
          Length = 153

 Score = 43.5 bits (101), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 26/92 (28%), Positives = 52/92 (56%), Gaps = 6/92 (6%)

Query: 66  LEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEV 125
           LE+ R  I+G+    + I  +I    T+ W++ R+ ++  ++L     E++   ++P+EV
Sbjct: 63  LEFIRDSINGIAKNYEDIKDIIKKN-TKNWAYERIGIVERALLIVATYEIL-FKNIPIEV 120

Query: 126 IISEYVCIAHDFFYGDEP--KFINAVLDKVSR 155
           I +E V +A +  YG+E   +F+N VL  + +
Sbjct: 121 IANEIVELAKE--YGNEKSYEFVNGVLANIEK 150


>gi|295425233|ref|ZP_06817936.1| transcription antitermination factor NusB [Lactobacillus
           amylolyticus DSM 11664]
 gi|295065009|gb|EFG55914.1| transcription antitermination factor NusB [Lactobacillus
           amylolyticus DSM 11664]
          Length = 131

 Score = 43.5 bits (101), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 26/102 (25%), Positives = 54/102 (52%), Gaps = 5/102 (4%)

Query: 53  TELDVESVYLHVDLE----WFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSIL 108
            E++V++V + +DLE    + + +I GVM ++  +   I++ L + W   R++ I  +IL
Sbjct: 26  AEVEVKTVEM-LDLEQLSAYSKTLIEGVMLKRDELKEAIAAHLKKGWRIERVNPITIAIL 84

Query: 109 RAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVL 150
              + E+ +   +  +  ++E + +  DF   D   FIN +L
Sbjct: 85  EIALYEIKDSAEIEPKAAVNEALNLCDDFTDPDAKPFINGIL 126


>gi|264679471|ref|YP_003279378.1| NusB antitermination factor [Comamonas testosteroni CNB-2]
 gi|299530553|ref|ZP_07043973.1| NusB antitermination factor [Comamonas testosteroni S44]
 gi|262209984|gb|ACY34082.1| NusB antitermination factor [Comamonas testosteroni CNB-2]
 gi|298721529|gb|EFI62466.1| NusB antitermination factor [Comamonas testosteroni S44]
          Length = 178

 Score = 43.5 bits (101), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 37/139 (26%), Positives = 66/139 (47%), Gaps = 13/139 (9%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           R  AR  A+Q LYQ  I+G +    I      RF  D      + +   D+  +  ++ G
Sbjct: 35  RSRAREFALQGLYQ-HIVGRNAVLDID-----RFTRDL-----AGFHKADVVHYDALLRG 83

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
            ++ +  +D LI+  L      + +  I  + +  GV E   C  VP  V+++E + +A 
Sbjct: 84  CVENEAALDALITPKLDR--GLTEISPIEHACMWIGVYEFQNCPDVPWRVVLNECIELAK 141

Query: 136 DFFYGDEPKFINAVLDKVS 154
           +F   D  K++NAVL+ ++
Sbjct: 142 EFGGTDGHKYVNAVLNGLA 160


>gi|150390264|ref|YP_001320313.1| NusB antitermination factor [Alkaliphilus metalliredigens QYMF]
 gi|149950126|gb|ABR48654.1| NusB antitermination factor [Alkaliphilus metalliredigens QYMF]
          Length = 129

 Score = 43.5 bits (101), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 26/120 (21%), Positives = 56/120 (46%), Gaps = 9/120 (7%)

Query: 47  YRFCADTELDVESVYLHVD--------LEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFS 98
           +    + E++VES+ L++D         E+    I   ++  + ID  I    ++ W  +
Sbjct: 5   FEMEMNNEMNVESIKLYMDREPQKIEQQEYVHTSITKTIENLEEIDTYIKQY-SKGWKLN 63

Query: 99  RLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEE 158
           R+  +  +ILR  + E++    +P  V ++E + +   +   +   FIN +L +   +EE
Sbjct: 64  RIANVDLAILRLALTEMLHMGEIPYRVSVNEAIELGKKYSAEESASFINGILGRFIEEEE 123


>gi|167770740|ref|ZP_02442793.1| hypothetical protein ANACOL_02086 [Anaerotruncus colihominis DSM
           17241]
 gi|167667335|gb|EDS11465.1| hypothetical protein ANACOL_02086 [Anaerotruncus colihominis DSM
           17241]
          Length = 161

 Score = 43.5 bits (101), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 23/77 (29%), Positives = 41/77 (53%), Gaps = 1/77 (1%)

Query: 89  SCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINA 148
           +  ++KW  +R+  +  SILR  + E+    +VP    I+E V +A  +   D+  F+N 
Sbjct: 62  ASYSKKWKINRMSRVALSILRLSLWEIDHVDTVPAGASINEAVELAKKYGNDDDFSFVNG 121

Query: 149 VLDK-VSRKEEIKRSGC 164
           VL   V RK+  +++G 
Sbjct: 122 VLGAYVRRKDSSEQAGV 138


>gi|163755270|ref|ZP_02162390.1| putative N utilization substance protein [Kordia algicida OT-1]
 gi|161324690|gb|EDP96019.1| putative N utilization substance protein [Kordia algicida OT-1]
          Length = 302

 Score = 43.5 bits (101), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 21/77 (27%), Positives = 42/77 (54%), Gaps = 2/77 (2%)

Query: 92  TEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLD 151
           T  W   R+  +   +L+  + EL++  S+P +V I+EY+ +A ++       F+N +LD
Sbjct: 223 TPNWDKDRIANLDLILLKMAICELLKFPSIPAKVTINEYIELAKEYSTSKSSMFVNGILD 282

Query: 152 KVSRKEEIKRSGCVSAI 168
           K+ +  E K+   ++ I
Sbjct: 283 KLIK--EYKKENKLNKI 297


>gi|309810676|ref|ZP_07704484.1| transcription antitermination factor NusB [Dermacoccus sp.
           Ellin185]
 gi|308435307|gb|EFP59131.1| transcription antitermination factor NusB [Dermacoccus sp.
           Ellin185]
          Length = 138

 Score = 43.5 bits (101), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 26/96 (27%), Positives = 49/96 (51%), Gaps = 4/96 (4%)

Query: 67  EWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVI 126
           E+  V++ GV+D  + I+  + +     W+  R+  +  ++LR    E++    VP  V 
Sbjct: 44  EYTAVLVRGVVDHWRTINEALETY-ARGWTLDRMPAVDRALLRVAAYEVLYVDDVPDGVA 102

Query: 127 ISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRS 162
           +SE   +A +    + P+FI  +L K+S   E+K S
Sbjct: 103 VSEAKNLATELSTDNSPQFIGGLLTKLS---EVKSS 135


>gi|223041028|ref|ZP_03611286.1| transcription antitermination factor NusB [Campylobacter rectus
           RM3267]
 gi|222877700|gb|EEF12823.1| transcription antitermination factor NusB [Campylobacter rectus
           RM3267]
          Length = 131

 Score = 43.5 bits (101), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 24/80 (30%), Positives = 42/80 (52%), Gaps = 2/80 (2%)

Query: 72  IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
           + HG+++    +D L+++ L E W  + +  I  ++LR G  E+ +       VII+E +
Sbjct: 48  LFHGILEHADGLDALLNARLKE-WKINEIGSIERAVLRLGAYEM-KFTPTDKAVIINEGI 105

Query: 132 CIAHDFFYGDEPKFINAVLD 151
            +  +      PKFIN VLD
Sbjct: 106 ELGKELGGDSAPKFINGVLD 125


>gi|227833206|ref|YP_002834913.1| N utilization substance protein B [Corynebacterium aurimucosum ATCC
           700975]
 gi|262184192|ref|ZP_06043613.1| N utilization substance protein B [Corynebacterium aurimucosum ATCC
           700975]
 gi|259514808|sp|C3PGM1|NUSB_CORA7 RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|227454222|gb|ACP32975.1| N utilization substance protein B [Corynebacterium aurimucosum ATCC
           700975]
          Length = 176

 Score = 43.5 bits (101), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 25/87 (28%), Positives = 44/87 (50%)

Query: 67  EWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVI 126
           ++ R I+ G  +    ID  I+  L+ +WS  R+  +  +I+R  V E++    VP    
Sbjct: 58  DYTREIVSGAAEELDAIDDAIARYLSSEWSLERIPAVDRAIMRVSVWEILFNADVPNATA 117

Query: 127 ISEYVCIAHDFFYGDEPKFINAVLDKV 153
           + E V +A ++       +I+AVLD V
Sbjct: 118 LVEGVELASEYSNDKAAPYIHAVLDDV 144


>gi|289523061|ref|ZP_06439915.1| transcription antitermination factor NusB [Anaerobaculum
           hydrogeniformans ATCC BAA-1850]
 gi|289503604|gb|EFD24768.1| transcription antitermination factor NusB [Anaerobaculum
           hydrogeniformans ATCC BAA-1850]
          Length = 151

 Score = 43.1 bits (100), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 38/144 (26%), Positives = 65/144 (45%), Gaps = 12/144 (8%)

Query: 12  LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71
           L  +R  AR  A+Q LY +DI    T +       + F  ++E   E +   +   W   
Sbjct: 2   LQQQRRRAREIALQLLYALDIRNDQTPD--EAMALFPFDGESE---EVMNYAI---W--- 50

Query: 72  IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
           ++  +  ++  ID LI   +T  W   R+  +    +R  + E +    VP+ V ISE +
Sbjct: 51  LVKEIWGKRVEIDNLIRMHIT-GWRPERMVTVDLEAIRLALFEGVYSKVVPIPVAISEAI 109

Query: 132 CIAHDFFYGDEPKFINAVLDKVSR 155
            +A  F   +  +F+N VL K+ R
Sbjct: 110 ELAKRFGTENSGRFVNGVLGKIVR 133


>gi|309804286|ref|ZP_07698363.1| transcription antitermination factor NusB [Lactobacillus iners
           LactinV 11V1-d]
 gi|312872493|ref|ZP_07732562.1| transcription antitermination factor NusB [Lactobacillus iners LEAF
           2062A-h1]
 gi|315653399|ref|ZP_07906321.1| transcription antitermination protein NusB [Lactobacillus iners
           ATCC 55195]
 gi|308163689|gb|EFO65959.1| transcription antitermination factor NusB [Lactobacillus iners
           LactinV 11V1-d]
 gi|311092075|gb|EFQ50450.1| transcription antitermination factor NusB [Lactobacillus iners LEAF
           2062A-h1]
 gi|315489324|gb|EFU78964.1| transcription antitermination protein NusB [Lactobacillus iners
           ATCC 55195]
          Length = 133

 Score = 43.1 bits (100), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 34/131 (25%), Positives = 56/131 (42%), Gaps = 10/131 (7%)

Query: 20  RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79
           R+ A+QALY  D +         E+E         +DV  +    D  +   I+ GVM  
Sbjct: 7   RVIAMQALYLADQV--------HEHEDVDAIKKKTMDVLDIKEFPDYAY--EILQGVMKE 56

Query: 80  KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139
           K  ID  ++  L + W+  RL+ I   IL  G+ E+     +     ++E + +  +F  
Sbjct: 57  KSSIDANLTKYLKKGWTLERLNKIDLVILEVGLFEIQNSKVIKPVSALNEALNMCDEFSS 116

Query: 140 GDEPKFINAVL 150
                FIN +L
Sbjct: 117 AKSKGFINGIL 127


>gi|288928412|ref|ZP_06422259.1| NusB family protein [Prevotella sp. oral taxon 317 str. F0108]
 gi|288331246|gb|EFC69830.1| NusB family protein [Prevotella sp. oral taxon 317 str. F0108]
          Length = 347

 Score = 43.1 bits (100), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 20/64 (31%), Positives = 36/64 (56%)

Query: 92  TEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLD 151
           +  W FSRL  +   I++  + E++   ++PV V I+EYV +A  +       +IN +LD
Sbjct: 208 SRNWDFSRLAYMDVVIMQIAIAEMLNFPNIPVSVTINEYVELAKLYSTHRSGGYINGMLD 267

Query: 152 KVSR 155
            ++R
Sbjct: 268 TIAR 271


>gi|260912453|ref|ZP_05918990.1| N utilization substance protein NusB [Prevotella sp. oral taxon 472
           str. F0295]
 gi|260633425|gb|EEX51578.1| N utilization substance protein NusB [Prevotella sp. oral taxon 472
           str. F0295]
          Length = 372

 Score = 43.1 bits (100), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 20/64 (31%), Positives = 36/64 (56%)

Query: 92  TEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLD 151
           +  W FSRL  +   I++  + E++   ++PV V I+EYV +A  +       +IN +LD
Sbjct: 233 SRNWDFSRLAYMDVVIMQIAIAEMLTFPNIPVSVTINEYVELAKLYSTHRSGGYINGMLD 292

Query: 152 KVSR 155
            ++R
Sbjct: 293 TIAR 296


>gi|167756946|ref|ZP_02429073.1| hypothetical protein CLORAM_02495 [Clostridium ramosum DSM 1402]
 gi|237734649|ref|ZP_04565130.1| predicted protein [Mollicutes bacterium D7]
 gi|167703121|gb|EDS17700.1| hypothetical protein CLORAM_02495 [Clostridium ramosum DSM 1402]
 gi|229382469|gb|EEO32560.1| predicted protein [Coprobacillus sp. D7]
          Length = 134

 Score = 43.1 bits (100), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 37/140 (26%), Positives = 65/140 (46%), Gaps = 10/140 (7%)

Query: 14  HRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVII 73
           +R+ I R  AV A YQ  ++  +  EI       R   +++ D+ S     D ++  + I
Sbjct: 4   YRKKIIREKAVIATYQKLLVDTNEDEI-------REYLNSDKDLSSN--QDDFDYCFMFI 54

Query: 74  HGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCI 133
             +    +     ++  L   W+  RL  +  +IL  G  EL+E      EVII+E V +
Sbjct: 55  ISIASNIERYKAEVAKYLKPGWTLDRLSKMELAILLVGCYELLETEQSK-EVIINEAVEL 113

Query: 134 AHDFFYGDEPKFINAVLDKV 153
           +  +   D  KFIN +L+++
Sbjct: 114 SKKYCDSDAYKFINGLLNRI 133


>gi|223043157|ref|ZP_03613204.1| transcription antitermination factor NusB [Staphylococcus capitis
           SK14]
 gi|314933698|ref|ZP_07841063.1| transcription antitermination factor NusB [Staphylococcus caprae
           C87]
 gi|222443368|gb|EEE49466.1| transcription antitermination factor NusB [Staphylococcus capitis
           SK14]
 gi|313653848|gb|EFS17605.1| transcription antitermination factor NusB [Staphylococcus caprae
           C87]
          Length = 129

 Score = 43.1 bits (100), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 40/142 (28%), Positives = 63/142 (44%), Gaps = 17/142 (11%)

Query: 16  RGIARLAAVQALYQIDI--IGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVII 73
           R  +R+ A Q L+Q+++     S TE I+      F  D        Y  +D ++   ++
Sbjct: 3   RKESRIQAFQTLFQLEMKESDLSITEAIN------FIKDD-------YPDLDFDFINWLV 49

Query: 74  HGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCI 133
            GV D +  +D      L + WS  RL      ILR    E++   + P +VII+E V +
Sbjct: 50  TGVKDHEAVLDEKFKPYLKD-WSIERLLKSDRIILRMATFEMLHSDT-PEKVIINEAVEL 107

Query: 134 AHDFFYGDEPKFINAVLDKVSR 155
              F      KFIN VL  ++ 
Sbjct: 108 TKQFSDDGHYKFINGVLSNINN 129


>gi|325954222|ref|YP_004237882.1| NusB antitermination factor [Weeksella virosa DSM 16922]
 gi|323436840|gb|ADX67304.1| NusB antitermination factor [Weeksella virosa DSM 16922]
          Length = 306

 Score = 43.1 bits (100), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 24/88 (27%), Positives = 40/88 (45%), Gaps = 5/88 (5%)

Query: 69  FRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIIS 128
           FR+ +      K+ I       + E W   R+  +   IL   + E     S+P +V I+
Sbjct: 207 FRLTVKHQSQNKEFI-----GQMAENWELDRIAAVDLIILEMAITEFKHFPSIPTKVTIN 261

Query: 129 EYVCIAHDFFYGDEPKFINAVLDKVSRK 156
           EY+ +A ++       F+N +LDK  RK
Sbjct: 262 EYIELAKNYSTEKSRIFVNGILDKALRK 289


>gi|259501554|ref|ZP_05744456.1| conserved hypothetical protein [Lactobacillus iners DSM 13335]
 gi|302191472|ref|ZP_07267726.1| transcription antitermination factor NusB [Lactobacillus iners
           AB-1]
 gi|309805466|ref|ZP_07699511.1| transcription antitermination factor NusB [Lactobacillus iners
           LactinV 09V1-c]
 gi|309808800|ref|ZP_07702685.1| transcription antitermination factor NusB [Lactobacillus iners
           LactinV 01V1-a]
 gi|309809548|ref|ZP_07703406.1| transcription antitermination factor NusB [Lactobacillus iners SPIN
           2503V10-D]
 gi|312871882|ref|ZP_07731966.1| transcription antitermination factor NusB [Lactobacillus iners LEAF
           3008A-a]
 gi|312874396|ref|ZP_07734426.1| transcription antitermination factor NusB [Lactobacillus iners LEAF
           2052A-d]
 gi|312874533|ref|ZP_07734558.1| transcription antitermination factor NusB [Lactobacillus iners LEAF
           2053A-b]
 gi|325911876|ref|ZP_08174280.1| transcription antitermination factor NusB [Lactobacillus iners UPII
           143-D]
 gi|325913448|ref|ZP_08175814.1| transcription antitermination factor NusB [Lactobacillus iners UPII
           60-B]
 gi|329919881|ref|ZP_08276819.1| transcription antitermination factor NusB [Lactobacillus iners SPIN
           1401G]
 gi|259167072|gb|EEW51567.1| conserved hypothetical protein [Lactobacillus iners DSM 13335]
 gi|308165117|gb|EFO67355.1| transcription antitermination factor NusB [Lactobacillus iners
           LactinV 09V1-c]
 gi|308167926|gb|EFO70059.1| transcription antitermination factor NusB [Lactobacillus iners
           LactinV 01V1-a]
 gi|308170220|gb|EFO72255.1| transcription antitermination factor NusB [Lactobacillus iners SPIN
           2503V10-D]
 gi|311089924|gb|EFQ48343.1| transcription antitermination factor NusB [Lactobacillus iners LEAF
           2053A-b]
 gi|311090008|gb|EFQ48422.1| transcription antitermination factor NusB [Lactobacillus iners LEAF
           2052A-d]
 gi|311092604|gb|EFQ50964.1| transcription antitermination factor NusB [Lactobacillus iners LEAF
           3008A-a]
 gi|325476382|gb|EGC79544.1| transcription antitermination factor NusB [Lactobacillus iners UPII
           143-D]
 gi|325477217|gb|EGC80363.1| transcription antitermination factor NusB [Lactobacillus iners UPII
           60-B]
 gi|328936971|gb|EGG33401.1| transcription antitermination factor NusB [Lactobacillus iners SPIN
           1401G]
          Length = 133

 Score = 43.1 bits (100), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 34/131 (25%), Positives = 56/131 (42%), Gaps = 10/131 (7%)

Query: 20  RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79
           R+ A+QALY  D +         E+E         +DV  +    D  +   I+ GVM  
Sbjct: 7   RVIAMQALYLADQV--------HEHEDVDAIKKKTMDVLDIKEFPDYAY--EILQGVMKE 56

Query: 80  KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139
           K  ID  ++  L + W+  RL+ I   IL  G+ E+     +     ++E + +  +F  
Sbjct: 57  KSSIDANLAKYLKKGWTLERLNKIDLVILEVGLFEIQNSKVIKPVSALNEALNMCDEFSS 116

Query: 140 GDEPKFINAVL 150
                FIN +L
Sbjct: 117 AKSKGFINGIL 127


>gi|110638835|ref|YP_679044.1| antitermination factor [Cytophaga hutchinsonii ATCC 33406]
 gi|110281516|gb|ABG59702.1| antitermination factor [Cytophaga hutchinsonii ATCC 33406]
          Length = 389

 Score = 43.1 bits (100), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 19/73 (26%), Positives = 42/73 (57%), Gaps = 2/73 (2%)

Query: 93  EKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDK 152
           + W   RL      IL+  + E+++  ++PV+V I+EY+ ++  +      +F+N +LD 
Sbjct: 308 QNWDIERLAFTDRIILKMALTEMVKFPNIPVKVTINEYIELSKSYSTPKSKQFVNGLLDT 367

Query: 153 VSRKEEIKRSGCV 165
           +S   ++++SG +
Sbjct: 368 ISI--DLQKSGLI 378


>gi|154498049|ref|ZP_02036427.1| hypothetical protein BACCAP_02030 [Bacteroides capillosus ATCC
           29799]
 gi|150273039|gb|EDN00196.1| hypothetical protein BACCAP_02030 [Bacteroides capillosus ATCC
           29799]
          Length = 223

 Score = 43.1 bits (100), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 27/94 (28%), Positives = 44/94 (46%), Gaps = 1/94 (1%)

Query: 67  EWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVI 126
           E+   ++ GV      +D  IS      W+FSR+  I  +++R  + E++    VP    
Sbjct: 104 EYISELVRGVYFHCPELDDYISRYAI-GWTFSRIPRIAVAVMRVAMYEILYMQDVPNAAA 162

Query: 127 ISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIK 160
           I+E + IA  +   +   FIN +L    RKE I 
Sbjct: 163 INEALEIAKGYETPEVVSFINGILGSFVRKESIP 196


>gi|261365604|ref|ZP_05978487.1| transcription antitermination factor NusB [Neisseria mucosa ATCC
           25996]
 gi|288565933|gb|EFC87493.1| transcription antitermination factor NusB [Neisseria mucosa ATCC
           25996]
          Length = 143

 Score = 43.1 bits (100), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 45/161 (27%), Positives = 61/161 (37%), Gaps = 26/161 (16%)

Query: 10  LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF 69
           +K   RR  AR  AVQALYQ  I   +  EI    +            +  +   D E F
Sbjct: 1   MKTPRRR--ARELAVQALYQAGINNTAAPEIAKNIQD-----------QPDFAKADEELF 47

Query: 70  RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVL----ELIECHSVPVEV 125
             +  G           I   L       R +  L  I RA +L    EL      P  V
Sbjct: 48  NKLFFGTHTHAAEYIQQIRPLL------DRDEKDLSPIERAVLLMACHELSAMPETPYPV 101

Query: 126 IISEYVCIAHDFFYGDEPKFINAVLDKVS---RKEEIKRSG 163
           II+E + +   F   D  KF+N +LDK++   R  + KR  
Sbjct: 102 IINEAIEVTKTFGGTDGHKFVNGILDKLAAQLRPNDPKRGN 142


>gi|291166741|gb|EFE28787.1| transcription antitermination factor NusB [Filifactor alocis ATCC
           35896]
          Length = 142

 Score = 43.1 bits (100), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 22/69 (31%), Positives = 41/69 (59%), Gaps = 2/69 (2%)

Query: 92  TEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLD 151
           +++W  SR+  +  +IL+  V E++    +PV V I+E V ++  +   D  KFIN +L 
Sbjct: 64  SKRWDVSRMIKLDLTILKLAVTEMMYYDDIPVAVAINEAVSLSKKYSGEDSYKFINGILK 123

Query: 152 KVS--RKEE 158
           +++  +KEE
Sbjct: 124 QITIDQKEE 132


>gi|283797531|ref|ZP_06346684.1| transcription antitermination factor NusB [Clostridium sp. M62/1]
 gi|291074900|gb|EFE12264.1| transcription antitermination factor NusB [Clostridium sp. M62/1]
          Length = 147

 Score = 43.1 bits (100), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 28/100 (28%), Positives = 49/100 (49%), Gaps = 7/100 (7%)

Query: 54  ELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVL 113
           ELDV       D  + +  +  V+++   +D  I+    E W+  R+  +  +ILR  + 
Sbjct: 54  ELDV------YDSGYVKNKVEKVLEKLTELDTAINET-AEGWTTRRMGKVELTILRLALF 106

Query: 114 ELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKV 153
           E+     VP +V I+E V +A  F   + P F+N +L K+
Sbjct: 107 EIRYDEEVPDKVAINEAVELAKKFGGDESPAFVNGILAKL 146


>gi|225011815|ref|ZP_03702253.1| transcription antitermination factor NusB [Flavobacteria bacterium
           MS024-2A]
 gi|225004318|gb|EEG42290.1| transcription antitermination factor NusB [Flavobacteria bacterium
           MS024-2A]
          Length = 314

 Score = 43.1 bits (100), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 20/65 (30%), Positives = 35/65 (53%)

Query: 92  TEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLD 151
           T  W   R+  +   IL+  + EL+    +P +V ++EY+ IA D+       F+N VLD
Sbjct: 235 TPNWDAERIAQLDNVILKVAIAELLYFPMIPSKVTLNEYLEIAKDYSTPKSNNFVNGVLD 294

Query: 152 KVSRK 156
           K+ ++
Sbjct: 295 KLVKE 299


>gi|257452280|ref|ZP_05617579.1| transcription antitermination protein NusB [Fusobacterium sp.
           3_1_5R]
          Length = 138

 Score = 43.1 bits (100), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 44/145 (30%), Positives = 74/145 (51%), Gaps = 17/145 (11%)

Query: 11  KLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFR 70
           K++ R   AR    + ++Q +I G S  E       + F  + E++ + V   V LE +R
Sbjct: 4   KMTRRE--AREELFKWIFQTEIQGNSVEEAFE----HSFLRE-EIEKDEVS-KVFLERYR 55

Query: 71  VIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEY 130
               G+++ ++ +   I + +T+ W   R+  +  S+L+  V E I    +PVE+I++E 
Sbjct: 56  ---KGMVEHQEEVAEKIEAAMTD-WDLPRIGYVEKSLLKIAVYE-IYFEDLPVEIIVNEA 110

Query: 131 VCIAHDFFYGD--EPKFINAVLDKV 153
           V IA    YGD    +FIN VL KV
Sbjct: 111 VEIAK--IYGDVKTHEFINGVLAKV 133


>gi|226311922|ref|YP_002771816.1| N utilization substance protein B [Brevibacillus brevis NBRC
           100599]
 gi|226094870|dbj|BAH43312.1| N utilization substance protein B [Brevibacillus brevis NBRC
           100599]
          Length = 137

 Score = 43.1 bits (100), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 36/148 (24%), Positives = 65/148 (43%), Gaps = 15/148 (10%)

Query: 15  RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74
           +R  AR   VQ L+QID+     T+ ++            L +E      + ++ R ++ 
Sbjct: 5   KRRTAREKVVQCLFQIDMAEVPLTDAVA------------LVMEES--EENAQYLRYLLD 50

Query: 75  GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134
           GV+     ID  I   L   W   R+  +  +ILR    E++     P +V+++E + +A
Sbjct: 51  GVLKNLTEIDAEIKKYL-RGWQLERIANVDRAILRLAFYEIMFEQDTPDKVVMNEAIEVA 109

Query: 135 HDFFYGDEPKFINAVLDKVSRKEEIKRS 162
             F      ++IN VL    +  E K++
Sbjct: 110 KLFSDEQSHRYINGVLSSFLQSRETKQA 137


>gi|307150111|ref|YP_003885495.1| NusB antitermination factor [Cyanothece sp. PCC 7822]
 gi|306980339|gb|ADN12220.1| NusB antitermination factor [Cyanothece sp. PCC 7822]
          Length = 212

 Score = 43.1 bits (100), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 32/87 (36%), Positives = 48/87 (55%), Gaps = 6/87 (6%)

Query: 72  IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
           II  V  R++ I+  +++ + + W  SRL  I   ILR  V E++    VP +V I+E V
Sbjct: 123 IIGTVFRRQKEIEQQLATGMVD-WQLSRLPKIDRDILRIAVAEML-FLEVPQKVAINEAV 180

Query: 132 CIAHDFFYGDEP--KFINAVLDKVSRK 156
            IA    Y DE   +FIN VL +V+ +
Sbjct: 181 EIAKR--YSDEEGYRFINGVLRRVTEQ 205


>gi|206602422|gb|EDZ38903.1| Transcription antitermination factor (NusB) [Leptospirillum sp.
           Group II '5-way CG']
          Length = 168

 Score = 43.1 bits (100), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 27/87 (31%), Positives = 45/87 (51%), Gaps = 2/87 (2%)

Query: 69  FRVIIHG-VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVII 127
           FR  + G + + +  ID  IS   +  WS  R+  +  +ILR G+ E++    VP  V I
Sbjct: 58  FRDRLGGTIREHRAEIDDTISR-FSVDWSLDRMGRVDRNILRMGICEILFEPEVPFRVTI 116

Query: 128 SEYVCIAHDFFYGDEPKFINAVLDKVS 154
            E + +AH F   +  +FIN +L ++ 
Sbjct: 117 DESLELAHQFSEPEAVRFINGILHRIG 143


>gi|218441932|ref|YP_002380261.1| transcription antitermination protein NusB [Cyanothece sp. PCC
           7424]
 gi|254772630|sp|B7KFR8|NUSB_CYAP7 RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|218174660|gb|ACK73393.1| NusB antitermination factor [Cyanothece sp. PCC 7424]
          Length = 212

 Score = 43.1 bits (100), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 32/87 (36%), Positives = 47/87 (54%), Gaps = 6/87 (6%)

Query: 72  IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
           II  V  R+  I+  +++ + + W  +RL  I   ILR  V E+I    VP +V I+E V
Sbjct: 123 IIQTVYRRQTEIEQELATVMVD-WQLNRLPKIDRDILRIAVAEMI-FLEVPQKVAINEAV 180

Query: 132 CIAHDFFYGDEP--KFINAVLDKVSRK 156
            IA    Y DE   +FIN VL +V+ +
Sbjct: 181 EIAKR--YSDEEGYRFINGVLRRVTER 205


>gi|321310948|ref|YP_004193277.1| transcription termination factor N-utilization substance protein B
           [Mycoplasma haemofelis str. Langford 1]
 gi|319802792|emb|CBY93438.1| transcription termination factor N-utilization substance protein B
           [Mycoplasma haemofelis str. Langford 1]
          Length = 136

 Score = 43.1 bits (100), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 26/89 (29%), Positives = 43/89 (48%), Gaps = 1/89 (1%)

Query: 72  IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
           I    +D KQ    +I S L   WS  RL+ +  SIL   + E       P++V+I+E V
Sbjct: 48  IFDNYLDNKQRYISVIESYLNADWSLERLNTLCASILLEAISEF-HVLKTPIKVLITESV 106

Query: 132 CIAHDFFYGDEPKFINAVLDKVSRKEEIK 160
             A ++   +E + +N VL+   + E + 
Sbjct: 107 KTAKNYCDENEYRIVNRVLEDFLKNEAVN 135


>gi|213963621|ref|ZP_03391873.1| antitermination protein NusB [Capnocytophaga sputigena Capno]
 gi|213953749|gb|EEB65079.1| antitermination protein NusB [Capnocytophaga sputigena Capno]
          Length = 302

 Score = 43.1 bits (100), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 36/141 (25%), Positives = 68/141 (48%), Gaps = 10/141 (7%)

Query: 30  IDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISS 89
           +D      T I+ E++  R     +    S+Y + + + F V    ++ +    D  + S
Sbjct: 161 MDDFPIVNTFIVREFKNLRPNPPEKYFTPSLYNNSEEKEFLV---DLLKKTALNDAKLKS 217

Query: 90  CLTEK---WSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFI 146
            + +K   W   R+ ++   IL+  + E +   S+PV+V I+EY+ +A ++       FI
Sbjct: 218 FVEDKLTNWDKERVAVLDLIILKMAICEFLHFPSIPVKVTINEYLELAKEYSTAKSSLFI 277

Query: 147 NAVLD----KVSRKEEIKRSG 163
           N VL+    ++S KE IK+ G
Sbjct: 278 NGVLNVVHKELSEKELIKKIG 298


>gi|270339970|ref|ZP_06006596.2| NusB family protein [Prevotella bergensis DSM 17361]
 gi|270333141|gb|EFA43927.1| NusB family protein [Prevotella bergensis DSM 17361]
          Length = 369

 Score = 42.7 bits (99), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 24/87 (27%), Positives = 42/87 (48%), Gaps = 5/87 (5%)

Query: 69  FRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIIS 128
           FR  I    D  +++     S  +  W FSRL  +   I++  + E++   ++P  V I+
Sbjct: 215 FRATILNADDYHRYM-----SETSRNWDFSRLAYMDVVIMQIAIAEMLTFPNIPATVTIN 269

Query: 129 EYVCIAHDFFYGDEPKFINAVLDKVSR 155
           EYV +A  +       +IN +LD + R
Sbjct: 270 EYVELAKLYSTPRSGAYINGMLDSIGR 296


>gi|320334545|ref|YP_004171256.1| NusB antitermination factor [Deinococcus maricopensis DSM 21211]
 gi|319755834|gb|ADV67591.1| NusB antitermination factor [Deinococcus maricopensis DSM 21211]
          Length = 169

 Score = 42.7 bits (99), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 23/90 (25%), Positives = 44/90 (48%), Gaps = 2/90 (2%)

Query: 66  LEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEV 125
           +++ R ++     R+  +D L++  +   W+F ++     ++LR    E++     P   
Sbjct: 62  VDFARDLLGAQTARRAEVDSLLTRTI-RGWTFEQMAQTDLNVLRLATAEMLRGED-PHPP 119

Query: 126 IISEYVCIAHDFFYGDEPKFINAVLDKVSR 155
           II  +V +A  F   D  +F+N VL  VSR
Sbjct: 120 IIESFVRVARKFGGEDSGRFVNGVLSGVSR 149


>gi|303250733|ref|ZP_07336929.1| transcription antitermination protein NusB [Actinobacillus
           pleuropneumoniae serovar 6 str. Femo]
 gi|303252024|ref|ZP_07338195.1| transcription antitermination protein NusB [Actinobacillus
           pleuropneumoniae serovar 2 str. 4226]
 gi|302649454|gb|EFL79639.1| transcription antitermination protein NusB [Actinobacillus
           pleuropneumoniae serovar 2 str. 4226]
 gi|302650403|gb|EFL80563.1| transcription antitermination protein NusB [Actinobacillus
           pleuropneumoniae serovar 6 str. Femo]
          Length = 98

 Score = 42.7 bits (99), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 30/91 (32%), Positives = 48/91 (52%), Gaps = 2/91 (2%)

Query: 64  VDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPV 123
           VDL +FR ++ G +   + ID  +   L    +   +D I  +ILR    EL     VP 
Sbjct: 4   VDLPYFRKLLRGTVLYVEAIDNDLRPFLDR--AEDEVDPIERTILRLSAYELKYELDVPY 61

Query: 124 EVIISEYVCIAHDFFYGDEPKFINAVLDKVS 154
           +V+I+E + +A  F   D  K+IN +LDK++
Sbjct: 62  KVVINEGIEVAKVFGSDDSHKYINGILDKLA 92


>gi|300172801|ref|YP_003771966.1| N utilization substance protein B [Leuconostoc gasicomitatum LMG
           18811]
 gi|299887179|emb|CBL91147.1| N utilization substance protein B homolog [Leuconostoc
           gasicomitatum LMG 18811]
          Length = 138

 Score = 42.7 bits (99), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 23/84 (27%), Positives = 45/84 (53%), Gaps = 1/84 (1%)

Query: 67  EWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVI 126
           ++   +++GV+  K  +D  I++ L   W+ +R++     ILR  + EL+  + VP +V 
Sbjct: 44  DYLPRLVNGVLGTKSELDEQITAHLANGWAINRINKADLIILRLAIYELLN-NLVPYKVA 102

Query: 127 ISEYVCIAHDFFYGDEPKFINAVL 150
           I E + +   F   +  KF+N +L
Sbjct: 103 IDEALILTKTFSDEESRKFVNGLL 126


>gi|221065986|ref|ZP_03542091.1| NusB antitermination factor [Comamonas testosteroni KF-1]
 gi|220711009|gb|EED66377.1| NusB antitermination factor [Comamonas testosteroni KF-1]
          Length = 178

 Score = 42.7 bits (99), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 37/139 (26%), Positives = 66/139 (47%), Gaps = 13/139 (9%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           R  AR  A+Q LYQ  I+G +    I      RF  D      + +   D+  +  ++ G
Sbjct: 35  RSRAREFALQGLYQ-HIVGRNAVLDID-----RFTRDL-----AGFHKADVVHYDALLRG 83

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
            ++ +  +D LI+  L      + +  I  + +  GV E   C  VP  V+++E + +A 
Sbjct: 84  CVENEVSLDALITPKLDR--GLTEISPIEHACMWIGVYEFQNCPDVPWRVVLNECIELAK 141

Query: 136 DFFYGDEPKFINAVLDKVS 154
           +F   D  K++NAVL+ ++
Sbjct: 142 EFGGTDGHKYVNAVLNGLA 160


>gi|319942896|ref|ZP_08017179.1| transcription antitermination factor NusB [Lautropia mirabilis ATCC
           51599]
 gi|319743438|gb|EFV95842.1| transcription antitermination factor NusB [Lautropia mirabilis ATCC
           51599]
          Length = 130

 Score = 42.7 bits (99), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 25/103 (24%), Positives = 50/103 (48%), Gaps = 5/103 (4%)

Query: 64  VDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPV 123
            D   F  ++ G + +   ++ ++   L    +   L  +  +IL     EL +   +P 
Sbjct: 30  ADRSHFDTLLKGTISQASALEAILLPSLDRPLNL--LSPVERAILMQATFELKDLQEIPY 87

Query: 124 EVIISEYVCIAHDFFYGDEPKFINAVLDKVS---RKEEIKRSG 163
            V+I+E V +A +F   D  K++N VLD+++   R  E++ +G
Sbjct: 88  RVVINEAVELAKNFGGTDGYKYVNGVLDRIAPSVRPHEVRPAG 130


>gi|296136867|ref|YP_003644109.1| NusB antitermination factor [Thiomonas intermedia K12]
 gi|294341036|emb|CAZ89431.1| putative NusB antitermination factor [Thiomonas sp. 3As]
 gi|295796989|gb|ADG31779.1| NusB antitermination factor [Thiomonas intermedia K12]
          Length = 202

 Score = 42.7 bits (99), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 28/100 (28%), Positives = 51/100 (51%), Gaps = 5/100 (5%)

Query: 64  VDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPV 123
           +D + F+ ++HG +     +D LI   +  + S   L  +  ++L  G  EL     VP 
Sbjct: 48  LDDDHFQSLLHGALAEAGPLDALIQPHIDRQTS--ELSPVEHALLLMGAFELQRHLDVPY 105

Query: 124 EVIISEYVCIAHDFFYGDEPKFINAVLDKVS---RKEEIK 160
            V+I+E V +   +   D  K++N VLD+++   RK E++
Sbjct: 106 RVVINEAVELGKVYGGTDGYKYVNGVLDRIAAQLRKTEVE 145


>gi|268315608|ref|YP_003289327.1| NusB antitermination factor [Rhodothermus marinus DSM 4252]
 gi|262333142|gb|ACY46939.1| NusB antitermination factor [Rhodothermus marinus DSM 4252]
          Length = 165

 Score = 42.7 bits (99), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 41/154 (26%), Positives = 71/154 (46%), Gaps = 15/154 (9%)

Query: 14  HRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVII 73
           H R   R   +QALY  ++ G  T E + +        D   D E++     L + R I 
Sbjct: 2   HSRREVRERVLQALYAYEV-GHDTAEHVIDTVLRPALKD---DREALRFATQL-FLRTIN 56

Query: 74  HGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCI 133
           +      +  D LI+  + + W  +R+ +I   +LR  + EL+    +P +V I+E + +
Sbjct: 57  YS-----EEADRLIADHV-KNWDLTRIALIDRLLLRMAICELLAFEDIPPKVSINEAIEL 110

Query: 134 AHDFFYGDEPKFINAVLDKV----SRKEEIKRSG 163
           A  +      +F+N VLD V     R+  +K+SG
Sbjct: 111 AKKYSTEKSGQFVNGVLDAVVLDLQRQGRLKKSG 144


>gi|154149182|ref|YP_001405652.1| transcription antitermination protein NusB [Campylobacter hominis
           ATCC BAA-381]
 gi|166215676|sp|A7HZG1|NUSB_CAMHC RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|153805191|gb|ABS52198.1| transcription antitermination factor NusB [Campylobacter hominis
           ATCC BAA-381]
          Length = 131

 Score = 42.7 bits (99), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 36/137 (26%), Positives = 62/137 (45%), Gaps = 16/137 (11%)

Query: 20  RLAAVQALYQIDIIGCSTTEIISEY-ETYRFCADTELDVESVYLHVDLEWFRVIIHGVMD 78
           R A V  LY  ++ G    + +SEY E  R   D     + ++            +GV  
Sbjct: 8   RNAVVSLLYAKEM-GSEMNDFVSEYLEEKRIRNDQRKFADKLF------------NGVCK 54

Query: 79  RKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFF 138
               ID  +   L E +  S++  +  +ILR G  E++   ++   +II+E + +A +  
Sbjct: 55  NVNQIDNELDKYLNE-YKISQIGTVERAILRLGAYEIM-YEAIDKAIIINEAIELAKELA 112

Query: 139 YGDEPKFINAVLDKVSR 155
               PKFIN VLD++ +
Sbjct: 113 GESSPKFINGVLDRIGK 129


>gi|28199615|ref|NP_779929.1| transcription antitermination protein NusB [Xylella fastidiosa
           Temecula1]
 gi|182682359|ref|YP_001830519.1| transcription antitermination protein NusB [Xylella fastidiosa M23]
 gi|32129808|sp|Q87AS8|NUSB_XYLFT RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|238691093|sp|B2I8Q4|NUSB_XYLF2 RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|28057730|gb|AAO29578.1| transcription termination factor [Xylella fastidiosa Temecula1]
 gi|182632469|gb|ACB93245.1| NusB antitermination factor [Xylella fastidiosa M23]
 gi|307578641|gb|ADN62610.1| transcription antitermination protein NusB [Xylella fastidiosa
           subsp. fastidiosa GB514]
          Length = 157

 Score = 42.7 bits (99), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 30/105 (28%), Positives = 50/105 (47%), Gaps = 5/105 (4%)

Query: 58  ESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIE 117
           E  Y   DL +F  ++ GV+     +D  ++  L    +   +D I  ++LR G  EL+ 
Sbjct: 53  EQAYEVADLVYFEDLVEGVLTHCAELDEKLTPYLDR--TIEEVDAIERAVLRLGAYELLY 110

Query: 118 CHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVS---RKEEI 159
              VP  V+I+E +  A  F       ++N VLD+ +   RK E+
Sbjct: 111 RQDVPYRVVINEAIMTAKRFGSKYGHTYVNGVLDRAALALRKVEV 155


>gi|159037466|ref|YP_001536719.1| NusB antitermination factor [Salinispora arenicola CNS-205]
 gi|189035900|sp|A8LY11|NUSB_SALAI RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|157916301|gb|ABV97728.1| NusB antitermination factor [Salinispora arenicola CNS-205]
          Length = 136

 Score = 42.7 bits (99), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 23/83 (27%), Positives = 42/83 (50%), Gaps = 1/83 (1%)

Query: 72  IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
           ++ G+      +D LI+S   E W+  R+  +  ++ R  V EL+    +   V ISE V
Sbjct: 50  LVEGIAVHLDRLDELIASY-AEGWTLDRMPAVDRNLARIAVYELLYVDEIDDAVAISEAV 108

Query: 132 CIAHDFFYGDEPKFINAVLDKVS 154
            +A      D P+F+N +L +++
Sbjct: 109 ELARQMSTDDSPRFLNGILGRIA 131


>gi|258515525|ref|YP_003191747.1| sun protein [Desulfotomaculum acetoxidans DSM 771]
 gi|257779230|gb|ACV63124.1| sun protein [Desulfotomaculum acetoxidans DSM 771]
          Length = 452

 Score = 42.7 bits (99), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 22/87 (25%), Positives = 44/87 (50%), Gaps = 2/87 (2%)

Query: 72  IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
           +++G +     +D +++  L  K   S     + +ILR G  +L+  H VP     +E  
Sbjct: 48  LVYGTLRALNTVDWVLAQFL--KHPLSSQTAWIRNILRLGTYQLLFMHRVPASAACNEAA 105

Query: 132 CIAHDFFYGDEPKFINAVLDKVSRKEE 158
            ++H + +  + KF+N VL  ++R+ E
Sbjct: 106 KLSHKYGHKGQVKFVNGVLRNIARQHE 132


>gi|256846520|ref|ZP_05551977.1| transcription antitermination factor NusB [Fusobacterium sp.
           3_1_36A2]
 gi|294784109|ref|ZP_06749410.1| transcription antitermination factor NusB [Fusobacterium sp.
           3_1_27]
 gi|256718289|gb|EEU31845.1| transcription antitermination factor NusB [Fusobacterium sp.
           3_1_36A2]
 gi|294488179|gb|EFG35524.1| transcription antitermination factor NusB [Fusobacterium sp.
           3_1_27]
          Length = 153

 Score = 42.7 bits (99), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 26/92 (28%), Positives = 51/92 (55%), Gaps = 6/92 (6%)

Query: 66  LEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEV 125
           LE+ R  I+G+    + I  +I    T+ W++ R+ ++  ++L     E++   + P+EV
Sbjct: 63  LEFIRDSINGIAKNYEDIKDIIKKN-TKNWAYERIGIVERALLIVATYEIL-FKNTPIEV 120

Query: 126 IISEYVCIAHDFFYGDEP--KFINAVLDKVSR 155
           I +E V +A +  YG+E   +F+N VL  + +
Sbjct: 121 IANEIVELAKE--YGNEKSYEFVNGVLANIEK 150


>gi|317132176|ref|YP_004091490.1| NusB antitermination factor [Ethanoligenens harbinense YUAN-3]
 gi|315470155|gb|ADU26759.1| NusB antitermination factor [Ethanoligenens harbinense YUAN-3]
          Length = 136

 Score = 42.7 bits (99), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 26/88 (29%), Positives = 41/88 (46%), Gaps = 1/88 (1%)

Query: 71  VIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEY 130
           ++  GV D +  ID  I       W+ SRL  ++ ++LR    EL+     P  V I+E 
Sbjct: 46  MLATGVYDHRDDIDRKIEQYAI-GWTKSRLSRVVLTVLRIAFFELLYEQDTPDSVAINEA 104

Query: 131 VCIAHDFFYGDEPKFINAVLDKVSRKEE 158
           V +A  +    +  F+N VL    R E+
Sbjct: 105 VELAKKYGGDGDSAFVNGVLGAFVRAEK 132


>gi|121534502|ref|ZP_01666325.1| NusB antitermination factor [Thermosinus carboxydivorans Nor1]
 gi|121306995|gb|EAX47914.1| NusB antitermination factor [Thermosinus carboxydivorans Nor1]
          Length = 141

 Score = 42.7 bits (99), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 36/150 (24%), Positives = 70/150 (46%), Gaps = 14/150 (9%)

Query: 12  LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71
           +S R+  AR  A+Q L+Q+D          ++ +     A    D + V  +   E+ R 
Sbjct: 1   MSRRK--AREIALQTLFQLDF---------NDTDPVAALAALVQDRDDVSKNAQ-EYARQ 48

Query: 72  IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLEL-IECHSVPVEVIISEY 130
           ++ G  D    ID +I+    E W   R+  +  +I+R  + E+      +P  V+I+E 
Sbjct: 49  LVTGTKDHLAEIDAIIAGQAKE-WKLERMAGVDRNIVRMAIYEMRYGQEKLPPNVVINEA 107

Query: 131 VCIAHDFFYGDEPKFINAVLDKVSRKEEIK 160
           V +A  F   +  +F+N +L  + +K+ ++
Sbjct: 108 VELAKIFSTEESGRFVNGILGALVKKKALQ 137


>gi|71276430|ref|ZP_00652706.1| Antitermination protein NusB [Xylella fastidiosa Dixon]
 gi|71900509|ref|ZP_00682639.1| Antitermination protein NusB [Xylella fastidiosa Ann-1]
 gi|170730978|ref|YP_001776411.1| transcription antitermination protein NusB [Xylella fastidiosa M12]
 gi|238687943|sp|B0U4K2|NUSB_XYLFM RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|71162746|gb|EAO12472.1| Antitermination protein NusB [Xylella fastidiosa Dixon]
 gi|71729749|gb|EAO31850.1| Antitermination protein NusB [Xylella fastidiosa Ann-1]
 gi|167965771|gb|ACA12781.1| transcription termination factor [Xylella fastidiosa M12]
          Length = 157

 Score = 42.7 bits (99), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 30/105 (28%), Positives = 50/105 (47%), Gaps = 5/105 (4%)

Query: 58  ESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIE 117
           E  Y   DL +F  ++ GV+     +D  ++  L    +   +D I  ++LR G  EL+ 
Sbjct: 53  EQAYEVADLVYFEDLVEGVLTHCAELDEKLTPYLDR--TIEEVDAIERAVLRLGAYELLY 110

Query: 118 CHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVS---RKEEI 159
              VP  V+I+E +  A  F       ++N VLD+ +   RK E+
Sbjct: 111 RQDVPYRVVINEAIMTAKRFGSKYGHTYVNGVLDRAALALRKVEV 155


>gi|319779127|ref|YP_004130040.1| Transcription termination protein NusB [Taylorella equigenitalis
           MCE9]
 gi|317109151|gb|ADU91897.1| Transcription termination protein NusB [Taylorella equigenitalis
           MCE9]
          Length = 144

 Score = 42.4 bits (98), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 35/141 (24%), Positives = 63/141 (44%), Gaps = 11/141 (7%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           R  AR   VQ LY   ++   + +I S         D+ +  +  +   DL  ++  ++G
Sbjct: 10  RHTARELVVQGLYSW-LLSNESQDIAS--------VDSHIREQENFDFADLNLYKTSLYG 60

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
           V+     +    +  ++   S S L  +  +I+     EL+     P  V+I+E + +A 
Sbjct: 61  VIQNADSLREEFAPFISR--SASELSPVEHAIMLLATYELLHFPETPYRVVINEAIELAK 118

Query: 136 DFFYGDEPKFINAVLDKVSRK 156
           +F   D  KFIN  LDK++ K
Sbjct: 119 EFGGTDGFKFINGALDKLAEK 139


>gi|284929125|ref|YP_003421647.1| transcription antitermination factor NusB [cyanobacterium UCYN-A]
 gi|284809584|gb|ADB95289.1| transcription antitermination factor NusB [cyanobacterium UCYN-A]
          Length = 216

 Score = 42.4 bits (98), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 31/95 (32%), Positives = 51/95 (53%), Gaps = 3/95 (3%)

Query: 72  IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
           IIH +  +K+ +D  + + L + W   RL  I   ILR  V E++   ++P +V I+E V
Sbjct: 123 IIHSICRKKKELDNQLETVLKD-WQLRRLAKIDQDILRIAVAEIL-LLNIPEKVAINEAV 180

Query: 132 CIAHDFFYGDEPKFINAVLDK-VSRKEEIKRSGCV 165
            +A  +   D  +FIN VL + V   +E K+  C+
Sbjct: 181 ELAKRYSDDDGYRFINGVLRRFVDHIKEEKKDECL 215


>gi|253999962|ref|YP_003052025.1| NusB antitermination factor [Methylovorus sp. SIP3-4]
 gi|253986641|gb|ACT51498.1| NusB antitermination factor [Methylovorus sp. SIP3-4]
          Length = 158

 Score = 42.4 bits (98), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 36/117 (30%), Positives = 56/117 (47%), Gaps = 5/117 (4%)

Query: 54  ELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVL 113
           EL  E  +   D E+ R ++ GV+  ++ +D  I+  +        L  I   IL     
Sbjct: 47  ELADEPEFDKADQEYLRKLLDGVLAEREELDRRIAVFVDR--PMQELSPIEHGILCLSAY 104

Query: 114 ELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRSGCVSAITQ 170
           ELI   S+P  V I+E V +A  +   D  K++N VLDK++ +    R G VS  T+
Sbjct: 105 ELIFDLSIPYRVAINEGVELAKIYGGTDGHKYVNGVLDKLAAE---ARPGEVSRHTR 158


>gi|325285045|ref|YP_004260835.1| NusB antitermination factor [Cellulophaga lytica DSM 7489]
 gi|324320499|gb|ADY27964.1| NusB antitermination factor [Cellulophaga lytica DSM 7489]
          Length = 315

 Score = 42.4 bits (98), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 25/77 (32%), Positives = 40/77 (51%), Gaps = 2/77 (2%)

Query: 92  TEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLD 151
           T  W   R+  I   +L+  + EL+   S+P +V I+E++ IA ++       FIN +LD
Sbjct: 236 TPNWDKDRIADIDGILLKMAICELLNFPSIPEKVTINEFLEIAKEYSTPKSSIFINGILD 295

Query: 152 KVSRKEEIKRSGCVSAI 168
           K+ R  E K  G +  I
Sbjct: 296 KLVR--EYKSEGKLKKI 310


>gi|290968496|ref|ZP_06560035.1| ribosomal RNA small subunit methyltransferase B [Megasphaera
           genomosp. type_1 str. 28L]
 gi|290781492|gb|EFD94081.1| ribosomal RNA small subunit methyltransferase B [Megasphaera
           genomosp. type_1 str. 28L]
          Length = 442

 Score = 42.4 bits (98), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 25/95 (26%), Positives = 44/95 (46%), Gaps = 2/95 (2%)

Query: 65  DLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVE 124
           D  ++  +++G +     +D  I   +  K S  ++D +  +ILR G+ +L     VP  
Sbjct: 38  DRRFYTELVYGTLRYMAMLDRAIG--MLSKRSLQQMDAVCAAILRLGLYQLQYLDKVPPS 95

Query: 125 VIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEI 159
               E V +A    +    KF+NAVL    R+ E+
Sbjct: 96  AACYEAVALARKMGHEGMAKFVNAVLRNALRRPEV 130


>gi|257465920|ref|ZP_05630231.1| transcription antitermination protein NusB [Fusobacterium
           gonidiaformans ATCC 25563]
 gi|315917076|ref|ZP_07913316.1| transcription antitermination protein NusB [Fusobacterium
           gonidiaformans ATCC 25563]
 gi|317058823|ref|ZP_07923308.1| transcription antitermination protein NusB [Fusobacterium sp.
           3_1_5R]
 gi|313684499|gb|EFS21334.1| transcription antitermination protein NusB [Fusobacterium sp.
           3_1_5R]
 gi|313690951|gb|EFS27786.1| transcription antitermination protein NusB [Fusobacterium
           gonidiaformans ATCC 25563]
          Length = 134

 Score = 42.4 bits (98), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 44/140 (31%), Positives = 69/140 (49%), Gaps = 15/140 (10%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           R  AR    + ++Q +I G S  E    +E      + E D  S    V LE +R    G
Sbjct: 3   RREAREELFKWIFQTEIQGNSVEEA---FEHSFLREEIEKDEVS---KVFLERYR---KG 53

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
           +++ ++ +   I + +T+ W   R+  +  S+L+  V E I    +PVE+I++E V IA 
Sbjct: 54  MVEHQEEVAEKIEAAMTD-WDLPRIGYVEKSLLKIAVYE-IYFEDLPVEIIVNEAVEIAK 111

Query: 136 DFFYGD--EPKFINAVLDKV 153
              YGD    +FIN VL KV
Sbjct: 112 --IYGDVKTHEFINGVLAKV 129


>gi|237739332|ref|ZP_04569813.1| transcription antitermination protein NusB [Fusobacterium sp.
           2_1_31]
 gi|229422940|gb|EEO37987.1| transcription antitermination protein NusB [Fusobacterium sp.
           2_1_31]
          Length = 152

 Score = 42.4 bits (98), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 30/135 (22%), Positives = 67/135 (49%), Gaps = 9/135 (6%)

Query: 25  QALYQIDIIGCSTTEIISEY--ETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQH 82
           + L++I + G   TE  SE   + +        D  S      L++ +  + G+ +   +
Sbjct: 21  EELFKI-VFGVEATESTSEELEKAFDIYLSNNEDFVSTLSESQLKFLQTSVKGISENYDN 79

Query: 83  IDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDE 142
           I   I +  T+ W++ R+ ++  ++L     E ++ ++ P+EV+ +E V +A +  YG+E
Sbjct: 80  IKDTIKAN-TQNWAYERIGLVERTLLIIATYEFLKANT-PIEVVANETVELAKE--YGNE 135

Query: 143 P--KFINAVLDKVSR 155
              +F+N +L  + +
Sbjct: 136 KSYEFVNGILANIGK 150


>gi|323340820|ref|ZP_08081072.1| transcription antitermination factor NusB [Lactobacillus ruminis
           ATCC 25644]
 gi|323091943|gb|EFZ34563.1| transcription antitermination factor NusB [Lactobacillus ruminis
           ATCC 25644]
          Length = 128

 Score = 42.4 bits (98), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 25/87 (28%), Positives = 44/87 (50%)

Query: 67  EWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVI 126
           E+   ++ GV +    ID  IS+ L + W  SRL+     ++R  V E+     VP +V 
Sbjct: 41  EYLTQLVDGVNEHLAEIDEAISAHLKKGWPISRLNKTDLILMRIAVYEIKFVEEVPNKVS 100

Query: 127 ISEYVCIAHDFFYGDEPKFINAVLDKV 153
           ++E + ++ +F      +FIN VL  +
Sbjct: 101 LNEALELSKEFSDETSRRFINGVLSNL 127


>gi|255658168|ref|ZP_05403577.1| transcription antitermination factor NusB [Mitsuokella multacida
           DSM 20544]
 gi|260849476|gb|EEX69483.1| transcription antitermination factor NusB [Mitsuokella multacida
           DSM 20544]
          Length = 143

 Score = 42.4 bits (98), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 35/141 (24%), Positives = 66/141 (46%), Gaps = 8/141 (5%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTEL-DVESVYLHVDLEWFRVIIH 74
           R  AR  A+QAL+Q+D+    + +     ET     DT L + E++  H D  +   ++H
Sbjct: 3   RRQAREVALQALFQLDLNPAESADQEEMQET--LAIDTALGEAEAMSAH-DRAFVAQLVH 59

Query: 75  GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLEL--IECHSVPVEVIISEYVC 132
           G     + ID  I++  + +W   R+  +  ++ R    E+   E    P  + I+E V 
Sbjct: 60  GTRANLEAIDAQIAAN-SREWKVERMAAVDRNLTRMATYEMCFAEEKLTP-NIAINEAVE 117

Query: 133 IAHDFFYGDEPKFINAVLDKV 153
           +A  +   D  +++N +L  +
Sbjct: 118 LAKKYGTDDSSRYVNGILGAI 138


>gi|118474879|ref|YP_892479.1| transcription antitermination protein NusB [Campylobacter fetus
           subsp. fetus 82-40]
 gi|166215675|sp|A0RQJ6|NUSB_CAMFF RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|118414105|gb|ABK82525.1| transcription antitermination factor NusB [Campylobacter fetus
           subsp. fetus 82-40]
          Length = 131

 Score = 42.4 bits (98), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 24/85 (28%), Positives = 44/85 (51%), Gaps = 2/85 (2%)

Query: 71  VIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEY 130
            + +GV+D    ID  + + L  KW    +  +  +ILR G  E I+  +    ++I+E 
Sbjct: 47  TLYNGVLDNLNLIDEALDAHLG-KWKLGEIGAVERAILRLGAYE-IKFTNTQSAIVINEA 104

Query: 131 VCIAHDFFYGDEPKFINAVLDKVSR 155
           + +A++       +FIN VLD +S+
Sbjct: 105 ILLANELGSDSSTRFINGVLDAISK 129


>gi|71898912|ref|ZP_00681079.1| Antitermination protein NusB [Xylella fastidiosa Ann-1]
 gi|71731324|gb|EAO33388.1| Antitermination protein NusB [Xylella fastidiosa Ann-1]
          Length = 157

 Score = 42.4 bits (98), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 30/105 (28%), Positives = 50/105 (47%), Gaps = 5/105 (4%)

Query: 58  ESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIE 117
           E  Y   DL +F  ++ GV+     +D  ++  L    +   +D I  ++LR G  EL+ 
Sbjct: 53  EQAYEVADLVYFEDLVEGVLTHCAELDEKLTPYLDR--TIEEVDAIERAVLRLGAYELLY 110

Query: 118 CHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVS---RKEEI 159
              VP  V+I+E +  A  F       ++N VLD+ +   RK E+
Sbjct: 111 RQDVPYRVVINEAIMTAKRFGSKYGHTYVNGVLDRAALVLRKVEV 155


>gi|299067743|emb|CBJ38952.1| antitermination factor (N utilization substance B) (transcriptional
           antiterminator) [Ralstonia solanacearum CMR15]
          Length = 155

 Score = 42.4 bits (98), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 46/170 (27%), Positives = 75/170 (44%), Gaps = 35/170 (20%)

Query: 4   QDN-----KKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVE 58
           QDN     K   K + RR  AR  A+Q LYQ  ++  +   ++          +  L   
Sbjct: 3   QDNSPAKPKAPPKSARRR--ARELALQGLYQW-LLNRNDPGVV----------EAHLHDA 49

Query: 59  SVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWS--FSRLDMILCSILRA----GV 112
             +   D   F  ++HG +  +        + LTE ++    R    L  + RA    G 
Sbjct: 50  QGFNKADRAHFDALLHGAIREE--------ATLTESFTPFLDRPVAELSPVERAALLVGA 101

Query: 113 LELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVS---RKEEI 159
            EL+ C  +P +V+I+E V +A  F   +  K++N VLDK++   R EE+
Sbjct: 102 YELVHCVDIPYKVVINEAVELAKTFGGVEGYKYVNGVLDKLAAQVRAEEV 151


>gi|328957299|ref|YP_004374685.1| ribosomal RNA small subunit methyltransferase B [Carnobacterium sp.
           17-4]
 gi|328673623|gb|AEB29669.1| ribosomal RNA small subunit methyltransferase B [Carnobacterium sp.
           17-4]
          Length = 458

 Score = 42.4 bits (98), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 38/143 (26%), Positives = 62/143 (43%), Gaps = 18/143 (12%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISE--YETYRFCADTELDVESVYLHVDLEWFRVII 73
           +  +R  A+  L + D  G  +  +I+E   +     AD  L  E VY            
Sbjct: 13  KKTSRYLAMSILERTDKTGSYSNLLINEAIQKNKLSAADARLLTELVY------------ 60

Query: 74  HGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCI 133
            GV+ RK  +D  +S  L E     ++D+ + ++LR  + ++I    +PV  I+ E V +
Sbjct: 61  -GVLQRKLTLDFYLSPFLNED---KKIDIWVRNLLRLSIYQMIYLDKIPVHAILFEAVEV 116

Query: 134 AHDFFYGDEPKFINAVLDKVSRK 156
           A    +    KFIN VL    R 
Sbjct: 117 AKKKGHVGISKFINGVLRNADRN 139


>gi|218132225|ref|ZP_03461029.1| hypothetical protein BACPEC_00082 [Bacteroides pectinophilus ATCC
           43243]
 gi|217992884|gb|EEC58884.1| hypothetical protein BACPEC_00082 [Bacteroides pectinophilus ATCC
           43243]
          Length = 135

 Score = 42.4 bits (98), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 20/64 (31%), Positives = 33/64 (51%)

Query: 90  CLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAV 149
            ++E W   R+  +  +ILR  V EL+    +P  V I+E V +A  +     P F+N +
Sbjct: 71  SVSEGWKLERMGKVELTILRLAVYELLYDDDIPANVAINEAVELAKVYGGDTSPAFVNGI 130

Query: 150 LDKV 153
           L K+
Sbjct: 131 LAKL 134


>gi|332884936|gb|EGK05191.1| hypothetical protein HMPREF9456_03104 [Dysgonomonas mossii DSM
           22836]
          Length = 308

 Score = 42.4 bits (98), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 19/60 (31%), Positives = 34/60 (56%)

Query: 92  TEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLD 151
           T+ W   R+ ++   I++  + E+IE  S+P+ V ++EY+ IA  +       FIN +LD
Sbjct: 234 TKNWESERIALMDMVIMQIAIAEIIEFPSIPISVSLNEYIDIAKSYSTIKSASFINGILD 293


>gi|125973090|ref|YP_001037000.1| sun protein [Clostridium thermocellum ATCC 27405]
 gi|256004593|ref|ZP_05429571.1| sun protein [Clostridium thermocellum DSM 2360]
 gi|281417285|ref|ZP_06248305.1| sun protein [Clostridium thermocellum JW20]
 gi|125713315|gb|ABN51807.1| sun protein [Clostridium thermocellum ATCC 27405]
 gi|255991465|gb|EEU01569.1| sun protein [Clostridium thermocellum DSM 2360]
 gi|281408687|gb|EFB38945.1| sun protein [Clostridium thermocellum JW20]
 gi|316940689|gb|ADU74723.1| sun protein [Clostridium thermocellum DSM 1313]
          Length = 455

 Score = 42.4 bits (98), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 37/142 (26%), Positives = 69/142 (48%), Gaps = 19/142 (13%)

Query: 20  RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79
           R  A++ LY I+  G  +   +++Y   +       + ES+    D  +   I++G +  
Sbjct: 11  RETALKILYDINEKGAYSNISLNKYLNGQ-------EFESI----DRAFITDIVYGTLKW 59

Query: 80  KQHIDLLISSCLTEKWSFSRLDMI---LCSILRAGVLELIECHSVPVEVIISEYVCIAHD 136
           +  ID LI     EK+S  ++  I   + +ILR G+ +LI    +P     +E V +A  
Sbjct: 60  QYTIDYLI-----EKFSSVKIKKISPWIFNILRMGIYQLIYTDKIPFFAACNESVKLAAK 114

Query: 137 FFYGDEPKFINAVLDKVSRKEE 158
           + +    K++NAVL  ++R +E
Sbjct: 115 YGHAASSKYVNAVLRNIARNKE 136


>gi|254974736|ref|ZP_05271208.1| N utilization substance protein B [Clostridium difficile QCD-66c26]
 gi|255092125|ref|ZP_05321603.1| N utilization substance protein B [Clostridium difficile CIP
           107932]
 gi|255100216|ref|ZP_05329193.1| N utilization substance protein B [Clostridium difficile QCD-63q42]
 gi|255306105|ref|ZP_05350277.1| N utilization substance protein B [Clostridium difficile ATCC
           43255]
 gi|255313862|ref|ZP_05355445.1| N utilization substance protein B [Clostridium difficile QCD-76w55]
 gi|255516543|ref|ZP_05384219.1| N utilization substance protein B [Clostridium difficile QCD-97b34]
 gi|255649643|ref|ZP_05396545.1| N utilization substance protein B [Clostridium difficile QCD-37x79]
 gi|260682807|ref|YP_003214092.1| N utilization substance protein B [Clostridium difficile CD196]
 gi|260686405|ref|YP_003217538.1| N utilization substance protein B [Clostridium difficile R20291]
 gi|306519760|ref|ZP_07406107.1| N utilization substance protein B [Clostridium difficile QCD-32g58]
 gi|260208970|emb|CBA62018.1| N utilization substance protein B [Clostridium difficile CD196]
 gi|260212421|emb|CBE03285.1| N utilization substance protein B [Clostridium difficile R20291]
          Length = 168

 Score = 42.4 bits (98), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 37/158 (23%), Positives = 72/158 (45%), Gaps = 21/158 (13%)

Query: 15  RRGIARLAAVQALYQIDI---------------IGCSTTEIISEYE--TYRFCADTELDV 57
           ++   R   ++ +YQI+I               +  ++  II+ Y+    ++  +T L +
Sbjct: 7   QKSTTREYIMKLIYQININKEDFETLEDKVDNFLKDNSEHIINRYKELALQYSKNTNLKL 66

Query: 58  ESVYLH--VDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLEL 115
           E   +   +D ++   +   + +    ID LI+    + W+  R+  +  SILR  V E+
Sbjct: 67  EDTEIEDVIDKKYINTVCKALKENHDKIDELINKH-AKNWTVDRMPKVDVSILRLSVCEI 125

Query: 116 IECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKV 153
           +   + P +V I+E V +A  +     PKFIN +L  V
Sbjct: 126 LYLDT-PNKVSINEAVELAKIYCDDKSPKFINGILGSV 162


>gi|332520936|ref|ZP_08397396.1| transcription antitermination factor NusB [Lacinutrix algicola
           5H-3-7-4]
 gi|332043466|gb|EGI79662.1| transcription antitermination factor NusB [Lacinutrix algicola
           5H-3-7-4]
          Length = 303

 Score = 42.4 bits (98), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 21/67 (31%), Positives = 38/67 (56%)

Query: 92  TEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLD 151
           T  W   R+  I   +L+ G+ E+ +  S+P +V I+EY+ I+ ++       FIN +LD
Sbjct: 224 TTNWDADRIANIDYLLLKMGICEIKDFPSIPTKVTINEYLEISKEYSTPKSKVFINGILD 283

Query: 152 KVSRKEE 158
           K+ ++ E
Sbjct: 284 KLVKEYE 290


>gi|323484853|ref|ZP_08090209.1| transcription antitermination factor NusB [Clostridium symbiosum
           WAL-14163]
 gi|323693777|ref|ZP_08107972.1| transcription antitermination factor NusB [Clostridium symbiosum
           WAL-14673]
 gi|323401849|gb|EGA94191.1| transcription antitermination factor NusB [Clostridium symbiosum
           WAL-14163]
 gi|323502163|gb|EGB18030.1| transcription antitermination factor NusB [Clostridium symbiosum
           WAL-14673]
          Length = 171

 Score = 42.4 bits (98), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 20/63 (31%), Positives = 34/63 (53%)

Query: 91  LTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVL 150
           + + W+  R+  +  +ILR  + E+     VP +V I+E V +A  F   D P F+N +L
Sbjct: 108 IAKGWTTKRMGKVELTILRLALFEIQYDEDVPEKVAINEAVELAKKFGGDDSPSFVNGIL 167

Query: 151 DKV 153
            K+
Sbjct: 168 AKL 170


>gi|315223935|ref|ZP_07865780.1| antitermination factor [Capnocytophaga ochracea F0287]
 gi|314946107|gb|EFS98111.1| antitermination factor [Capnocytophaga ochracea F0287]
          Length = 313

 Score = 42.4 bits (98), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 22/73 (30%), Positives = 41/73 (56%), Gaps = 4/73 (5%)

Query: 95  WSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVS 154
           W   R+ +I   +L+  V E++   S+PV+V ++EY+ +A ++       FIN V+  V 
Sbjct: 237 WEKDRVAVIDSILLKMAVCEMLSFPSIPVKVTLNEYLELAKEYSTTKSSAFINGVMKNVH 296

Query: 155 R----KEEIKRSG 163
           +    K++IK+ G
Sbjct: 297 KELEEKQQIKKIG 309


>gi|256820792|ref|YP_003142071.1| N utilization substance protein B [Capnocytophaga ochracea DSM
           7271]
 gi|256582375|gb|ACU93510.1| N utilization substance protein B [Capnocytophaga ochracea DSM
           7271]
          Length = 302

 Score = 42.4 bits (98), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 22/73 (30%), Positives = 41/73 (56%), Gaps = 4/73 (5%)

Query: 95  WSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVS 154
           W   R+ +I   +L+  V E++   S+PV+V ++EY+ +A ++       FIN V+  V 
Sbjct: 226 WEKDRVAVIDSILLKMAVCEMLSFPSIPVKVTLNEYLELAKEYSTTKSSAFINGVMKNVH 285

Query: 155 R----KEEIKRSG 163
           +    K++IK+ G
Sbjct: 286 KELEEKQQIKKIG 298


>gi|255655206|ref|ZP_05400615.1| N utilization substance protein B [Clostridium difficile QCD-23m63]
 gi|296451191|ref|ZP_06892932.1| transcription antitermination factor NusB [Clostridium difficile
           NAP08]
 gi|296880457|ref|ZP_06904419.1| transcription antitermination factor NusB [Clostridium difficile
           NAP07]
 gi|296260012|gb|EFH06866.1| transcription antitermination factor NusB [Clostridium difficile
           NAP08]
 gi|296428411|gb|EFH14296.1| transcription antitermination factor NusB [Clostridium difficile
           NAP07]
          Length = 168

 Score = 42.4 bits (98), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 32/122 (26%), Positives = 60/122 (49%), Gaps = 6/122 (4%)

Query: 36  STTEIISEYE--TYRFCADTELDVESVYLH--VDLEWFRVIIHGVMDRKQHIDLLISSCL 91
           ++  II+ Y+    ++  +T L +E   +   +D ++   +   + +    ID LI+   
Sbjct: 43  NSEHIINRYKELALQYSKNTNLKLEDTEIEDVIDKKYINTVCKALKENHDKIDELINKH- 101

Query: 92  TEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLD 151
            + W+  R+  +  SILR  V E++   + P +V I+E V +A  +     PKFIN +L 
Sbjct: 102 AKNWTVDRMPKVDVSILRLSVCEILYLDT-PNKVSINEAVELAKIYCDDKSPKFINGILG 160

Query: 152 KV 153
            V
Sbjct: 161 SV 162


>gi|126698797|ref|YP_001087694.1| N utilization substance protein B [Clostridium difficile 630]
 gi|119390758|sp|Q18B61|NUSB_CLOD6 RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|115250234|emb|CAJ68055.1| N utilization substance protein B homolog (Protein NusB)
           [Clostridium difficile]
          Length = 169

 Score = 42.4 bits (98), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 37/158 (23%), Positives = 72/158 (45%), Gaps = 21/158 (13%)

Query: 15  RRGIARLAAVQALYQIDI---------------IGCSTTEIISEYE--TYRFCADTELDV 57
           ++   R   ++ +YQI+I               +  ++  II+ Y+    ++  +T L +
Sbjct: 8   QKSTTREYIMKLIYQININKEDFETLEDKVDNFLKDNSEHIINRYKELALQYSKNTNLKL 67

Query: 58  ESVYLH--VDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLEL 115
           E   +   +D ++   +   + +    ID LI+    + W+  R+  +  SILR  V E+
Sbjct: 68  EDTEIEDVIDKKYINTVCKALKENHDKIDELINKH-AKNWTVDRMPKVDVSILRLSVCEI 126

Query: 116 IECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKV 153
           +   + P +V I+E V +A  +     PKFIN +L  V
Sbjct: 127 LYLDT-PNKVSINEAVELAKIYCDDKSPKFINGILGSV 163


>gi|260591412|ref|ZP_05856870.1| NusB family protein [Prevotella veroralis F0319]
 gi|260536604|gb|EEX19221.1| NusB family protein [Prevotella veroralis F0319]
          Length = 357

 Score = 42.0 bits (97), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 19/64 (29%), Positives = 35/64 (54%)

Query: 92  TEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLD 151
           +  W FSRL  +   I++  + E++   ++P  V I+EYV +A  +       +IN +LD
Sbjct: 233 SRNWDFSRLAYMDVVIMQIAIAEMMTFPNIPATVTINEYVDLAKLYSTPRSGGYINGMLD 292

Query: 152 KVSR 155
            ++R
Sbjct: 293 TIAR 296


>gi|116333616|ref|YP_795143.1| transcription antitermination protein NusB [Lactobacillus brevis
           ATCC 367]
 gi|122269697|sp|Q03RR0|NUSB_LACBA RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|116098963|gb|ABJ64112.1| NusB antitermination factor [Lactobacillus brevis ATCC 367]
          Length = 142

 Score = 42.0 bits (97), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 22/84 (26%), Positives = 39/84 (46%)

Query: 67  EWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVI 126
           ++   +++GV+  +  +D  I   L+  W   R+      ILR    E+     VP  V 
Sbjct: 47  DYLATLVNGVLAHQSELDAQIDQYLSTGWQLKRIAKTDLVILRMAFYEIEHVDDVPNRVA 106

Query: 127 ISEYVCIAHDFFYGDEPKFINAVL 150
           ++E + +A +F      +FIN VL
Sbjct: 107 VNEALELAKNFSDDRSRRFINGVL 130


>gi|313201935|ref|YP_004040593.1| nusb antitermination factor [Methylovorus sp. MP688]
 gi|312441251|gb|ADQ85357.1| NusB antitermination factor [Methylovorus sp. MP688]
          Length = 158

 Score = 42.0 bits (97), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 34/111 (30%), Positives = 53/111 (47%), Gaps = 5/111 (4%)

Query: 54  ELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVL 113
           EL  E  +   D E+ R ++ GV+  ++ +D  I+  +        L  I   IL     
Sbjct: 47  ELADEPEFDKADQEYLRKLLDGVLAEREELDRRIAVFVDR--PMQELSPIEHGILCLSAY 104

Query: 114 ELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKV---SRKEEIKR 161
           ELI   S+P  V I+E V +A  +   D  K++N VLDK+   +R  E+ R
Sbjct: 105 ELIFDLSIPYRVAINEGVELAKIYGGTDGHKYVNGVLDKLAAEARPGEVNR 155


>gi|297623354|ref|YP_003704788.1| NusB antitermination factor [Truepera radiovictrix DSM 17093]
 gi|297164534|gb|ADI14245.1| NusB antitermination factor [Truepera radiovictrix DSM 17093]
          Length = 165

 Score = 42.0 bits (97), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 22/77 (28%), Positives = 42/77 (54%), Gaps = 1/77 (1%)

Query: 80  KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139
           ++ +D  +S  L E W+F+++     ++LR  + E++    VP EV I   V IA  +  
Sbjct: 70  REEVDARLSEAL-EGWTFAQMAQTDLAVLRLALTEILFEPEVPKEVTIEVAVRIAKRYGG 128

Query: 140 GDEPKFINAVLDKVSRK 156
            +  +F+N VL ++ R+
Sbjct: 129 EESGRFVNGVLGRLYRE 145


>gi|134299563|ref|YP_001113059.1| sun protein [Desulfotomaculum reducens MI-1]
 gi|134052263|gb|ABO50234.1| sun protein [Desulfotomaculum reducens MI-1]
          Length = 453

 Score = 42.0 bits (97), Expect = 0.027,   Method: Compositional matrix adjust.
 Identities = 24/86 (27%), Positives = 45/86 (52%), Gaps = 2/86 (2%)

Query: 72  IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
           I++GV+     ID +++  L  K   +   + + +ILR G  +++    VP     +E V
Sbjct: 48  IVYGVLRNLNTIDWVLAHFL--KQPLASQTVWIRNILRMGTYQIMFMPRVPDSAACNESV 105

Query: 132 CIAHDFFYGDEPKFINAVLDKVSRKE 157
            +A  + +   PKF+N VL  V+R++
Sbjct: 106 NLAKKYGHQGAPKFVNGVLRNVARQQ 131


>gi|222823552|ref|YP_002575126.1| transcription antitermination factor NusB [Campylobacter lari
           RM2100]
 gi|254772621|sp|B9KFP0|NUSB_CAMLR RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|222538774|gb|ACM63875.1| transcription antitermination factor NusB [Campylobacter lari
           RM2100]
          Length = 132

 Score = 42.0 bits (97), Expect = 0.027,   Method: Compositional matrix adjust.
 Identities = 27/86 (31%), Positives = 48/86 (55%), Gaps = 8/86 (9%)

Query: 74  HGVMDRKQHIDLLISSCLTEKWSFSRLDMILC---SILRAGVLELIECHSVPVEVIISEY 130
           +G+ ++   +D  I+ CL E     +LD +     +ILR G  E++   S    +II+E 
Sbjct: 50  NGINEQLALLDEKINECLKE----HKLDGVASIEKAILRLGAYEIL-FTSTQKAIIINEA 104

Query: 131 VCIAHDFFYGDEPKFINAVLDKVSRK 156
           + +A +    + PKFIN VLDK++++
Sbjct: 105 IELAKEMAGDNAPKFINGVLDKINKE 130


>gi|206901052|ref|YP_002250763.1| transcription antitermination factor NusB [Dictyoglomus
           thermophilum H-6-12]
 gi|254772635|sp|B5YE05|NUSB_DICT6 RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|206740155|gb|ACI19213.1| transcription antitermination factor NusB [Dictyoglomus
           thermophilum H-6-12]
          Length = 144

 Score = 42.0 bits (97), Expect = 0.027,   Method: Compositional matrix adjust.
 Identities = 23/90 (25%), Positives = 44/90 (48%), Gaps = 2/90 (2%)

Query: 72  IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
           +  G +  K   D +IS   ++ W   R+  +  +ILR  + E+     +P  V ++E V
Sbjct: 43  LYDGALQYKDLADSIISR-FSKNWKLERMGALERNILRLAIAEMFTFSDIPQAVTVNEAV 101

Query: 132 CIAHDFFYGDEPKFINAVLDKVSRK-EEIK 160
            +A  +   +  +F+N +L  + R  EE+K
Sbjct: 102 ELAKKYVSPEAGRFVNGILRNIVRNWEEVK 131


>gi|269120364|ref|YP_003308541.1| NusB antitermination factor [Sebaldella termitidis ATCC 33386]
 gi|268614242|gb|ACZ08610.1| NusB antitermination factor [Sebaldella termitidis ATCC 33386]
          Length = 130

 Score = 42.0 bits (97), Expect = 0.027,   Method: Compositional matrix adjust.
 Identities = 27/86 (31%), Positives = 43/86 (50%), Gaps = 2/86 (2%)

Query: 65  DLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVE 124
           D+E+ R  I  V + K+ I+  I S L   WSF  L  +  ++L+    E+ E      E
Sbjct: 42  DIEFMREYIKNVTEHKESIEDKIKSKLV-GWSFDILGTVEKTLLKMSFYEITEA-GTGHE 99

Query: 125 VIISEYVCIAHDFFYGDEPKFINAVL 150
           ++I+E V +A  +     P FIN +L
Sbjct: 100 IVINETVELAKKYGEDKTPDFINGIL 125


>gi|218282376|ref|ZP_03488658.1| hypothetical protein EUBIFOR_01240 [Eubacterium biforme DSM 3989]
 gi|218216662|gb|EEC90200.1| hypothetical protein EUBIFOR_01240 [Eubacterium biforme DSM 3989]
          Length = 125

 Score = 42.0 bits (97), Expect = 0.027,   Method: Compositional matrix adjust.
 Identities = 22/79 (27%), Positives = 42/79 (53%), Gaps = 1/79 (1%)

Query: 75  GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134
           G ++ K+  +  I+  L + W F RL M+  +IL     E++  +  P  V+I+E + +A
Sbjct: 48  GTIENKEAFEQKINELLRDDWDFDRLSMLEQAILLISFQEIL-ANDTPKAVVINEAITLA 106

Query: 135 HDFFYGDEPKFINAVLDKV 153
             +   +  K +N VLD++
Sbjct: 107 KKYCDDNSYKLLNGVLDQL 125


>gi|171740948|ref|ZP_02916755.1| hypothetical protein BIFDEN_00009 [Bifidobacterium dentium ATCC
           27678]
 gi|306823314|ref|ZP_07456689.1| transcription antitermination factor NusB [Bifidobacterium dentium
           ATCC 27679]
 gi|309802656|ref|ZP_07696760.1| transcription antitermination factor NusB [Bifidobacterium dentium
           JCVIHMP022]
 gi|171276562|gb|EDT44223.1| hypothetical protein BIFDEN_00009 [Bifidobacterium dentium ATCC
           27678]
 gi|304553021|gb|EFM40933.1| transcription antitermination factor NusB [Bifidobacterium dentium
           ATCC 27679]
 gi|308220720|gb|EFO77028.1| transcription antitermination factor NusB [Bifidobacterium dentium
           JCVIHMP022]
          Length = 147

 Score = 42.0 bits (97), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 37/140 (26%), Positives = 59/140 (42%), Gaps = 14/140 (10%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV-IIH 74
           R  AR  A+  LY+ D  G     +++E             +E       L  + + I+ 
Sbjct: 3   RSTARKRALNTLYEADEKGQDILSLLAER------------IEQPGAQTPLPDYAIEIVR 50

Query: 75  GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134
           GV +    ID ++    T  W   R+ ++  +ILR  V E++    VP  V I E + +A
Sbjct: 51  GVAENLYRIDSVLDEHST-GWKVKRMGVVDRNILRIAVWEIMFNDDVPNMVAIDEALGLA 109

Query: 135 HDFFYGDEPKFINAVLDKVS 154
                 D P FI+ +L  VS
Sbjct: 110 KTLCDDDSPAFIHGLLSAVS 129


>gi|253578527|ref|ZP_04855799.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA]
 gi|251850845|gb|EES78803.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA]
          Length = 140

 Score = 42.0 bits (97), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 27/98 (27%), Positives = 45/98 (45%), Gaps = 1/98 (1%)

Query: 65  DLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVE 124
           D E+       V+++   ID L++   +  W   R+  +  + LR  V EL     VP  
Sbjct: 43  DQEYMSRKYRHVLEKLDEIDALLNET-SNGWKTKRMSRVDLTALRLAVYELKYDKDVPTG 101

Query: 125 VIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRS 162
           V I+E V +A  F       F+N +L K++  E  ++S
Sbjct: 102 VAINEAVELAKRFGGETSGSFVNGILGKIANSESEEKS 139


>gi|237741349|ref|ZP_04571830.1| N utilization substance protein B [Fusobacterium sp. 4_1_13]
 gi|229430881|gb|EEO41093.1| N utilization substance protein B [Fusobacterium sp. 4_1_13]
          Length = 153

 Score = 42.0 bits (97), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 25/92 (27%), Positives = 51/92 (55%), Gaps = 6/92 (6%)

Query: 66  LEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEV 125
           LE+ R  I+G+    + I  +I    T+ W++ R+ ++  ++L     E++   + P+EV
Sbjct: 63  LEFIRDSINGIAKNYEDIKDIIKKN-TKNWAYERIGIVERALLIVATYEIL-FKNTPIEV 120

Query: 126 IISEYVCIAHDFFYGDEP--KFINAVLDKVSR 155
           I +E V +A +  YG+E   +F+N +L  + +
Sbjct: 121 IANEIVELAKE--YGNEKSYEFVNGILANIEK 150


>gi|218202330|gb|EEC84757.1| hypothetical protein OsI_31764 [Oryza sativa Indica Group]
          Length = 570

 Score = 42.0 bits (97), Expect = 0.028,   Method: Composition-based stats.
 Identities = 26/89 (29%), Positives = 46/89 (51%), Gaps = 1/89 (1%)

Query: 65  DLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVE 124
           D+    VI+ G +  K+++D LI S  +E+  F  ++ +L  ILR G  E+++  +VP  
Sbjct: 155 DIRLVTVIVAGTVRWKRYLDYLIMSLCSEEKVFREMEPLLLQILRIGFFEILKL-NVPAY 213

Query: 125 VIISEYVCIAHDFFYGDEPKFINAVLDKV 153
             + E V +A           +NA+L K+
Sbjct: 214 AAVDENVRLAKVALRPGAGNLVNAILRKL 242


>gi|115479747|ref|NP_001063467.1| Os09g0477900 [Oryza sativa Japonica Group]
 gi|52077347|dbj|BAD46388.1| sunL protein-like [Oryza sativa Japonica Group]
 gi|113631700|dbj|BAF25381.1| Os09g0477900 [Oryza sativa Japonica Group]
 gi|222641777|gb|EEE69909.1| hypothetical protein OsJ_29754 [Oryza sativa Japonica Group]
          Length = 570

 Score = 42.0 bits (97), Expect = 0.028,   Method: Composition-based stats.
 Identities = 26/89 (29%), Positives = 46/89 (51%), Gaps = 1/89 (1%)

Query: 65  DLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVE 124
           D+    VI+ G +  K+++D LI S  +E+  F  ++ +L  ILR G  E+++  +VP  
Sbjct: 155 DIRLVTVIVAGTVRWKRYLDYLIMSLCSEEKVFREMEPLLLQILRIGFFEILKL-NVPAY 213

Query: 125 VIISEYVCIAHDFFYGDEPKFINAVLDKV 153
             + E V +A           +NA+L K+
Sbjct: 214 AAVDENVRLAKVALRPGAGNLVNAILRKL 242


>gi|154487009|ref|ZP_02028416.1| hypothetical protein BIFADO_00847 [Bifidobacterium adolescentis
           L2-32]
 gi|154084872|gb|EDN83917.1| hypothetical protein BIFADO_00847 [Bifidobacterium adolescentis
           L2-32]
          Length = 147

 Score = 42.0 bits (97), Expect = 0.029,   Method: Compositional matrix adjust.
 Identities = 37/144 (25%), Positives = 59/144 (40%), Gaps = 14/144 (9%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV-IIH 74
           R  AR  A+  LY+ D  G     +++E             +E       L  + + I+ 
Sbjct: 3   RSTARKRALNTLYEADEKGQDILSLLAER------------IEQPGAQTPLPDYAIEIVR 50

Query: 75  GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134
           GV +    ID ++    T  W   R+ ++  +ILR    E++    VP  V I E + +A
Sbjct: 51  GVAEHIAAIDAMLDEHST-GWKVKRMGVVDRNILRIAAWEIMFNDDVPNMVAIDEALSLA 109

Query: 135 HDFFYGDEPKFINAVLDKVSRKEE 158
                 D P FI+ +L  VS   E
Sbjct: 110 KTLCDDDSPAFIHGLLSAVSADAE 133


>gi|229828872|ref|ZP_04454941.1| hypothetical protein GCWU000342_00957 [Shuttleworthia satelles DSM
           14600]
 gi|229792035|gb|EEP28149.1| hypothetical protein GCWU000342_00957 [Shuttleworthia satelles DSM
           14600]
          Length = 152

 Score = 42.0 bits (97), Expect = 0.030,   Method: Compositional matrix adjust.
 Identities = 25/80 (31%), Positives = 40/80 (50%), Gaps = 2/80 (2%)

Query: 75  GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134
           G       ID +I    +E W  SRL  +  ++LR  V E+ +  ++P  + I+E V +A
Sbjct: 75  GAAGHLPEIDRIIEES-SEGWKLSRLTKVDLTLLRLAVYEM-KFENLPSGIAINEAVELA 132

Query: 135 HDFFYGDEPKFINAVLDKVS 154
             +     P F+N VL K+S
Sbjct: 133 KRYGTDKSPAFVNGVLAKIS 152


>gi|258511747|ref|YP_003185181.1| NusB antitermination factor [Alicyclobacillus acidocaldarius subsp.
           acidocaldarius DSM 446]
 gi|257478473|gb|ACV58792.1| NusB antitermination factor [Alicyclobacillus acidocaldarius subsp.
           acidocaldarius DSM 446]
          Length = 166

 Score = 42.0 bits (97), Expect = 0.031,   Method: Compositional matrix adjust.
 Identities = 25/89 (28%), Positives = 42/89 (47%), Gaps = 1/89 (1%)

Query: 65  DLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVE 124
           D  +   ++ G       ID L++  + E+WS  R+  +  ++LR    EL+    +P+ 
Sbjct: 43  DFTYIEELVDGTRRHLDEIDELLARHM-ERWSPERIGRVERNVLRLATYELLFEPELPIA 101

Query: 125 VIISEYVCIAHDFFYGDEPKFINAVLDKV 153
             I E V IA  F      +F+N VL K+
Sbjct: 102 SAIDEAVEIAKTFATEQSGRFVNGVLAKL 130


>gi|184200984|ref|YP_001855191.1| antitermination factor NusB [Kocuria rhizophila DC2201]
 gi|183581214|dbj|BAG29685.1| transcription antitermination protein NusB [Kocuria rhizophila
           DC2201]
          Length = 138

 Score = 42.0 bits (97), Expect = 0.033,   Method: Compositional matrix adjust.
 Identities = 22/84 (26%), Positives = 45/84 (53%), Gaps = 1/84 (1%)

Query: 72  IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
           I+ GV +R++ ID  + +  ++ W+  R+  +  + LR G  EL+    +P  V ++E V
Sbjct: 48  ILEGVDERREDIDEFLETY-SQGWALGRMPAVDRNALRVGAWELLYNSEIPDGVAVAEAV 106

Query: 132 CIAHDFFYGDEPKFINAVLDKVSR 155
            +       D P+F+N +L ++ +
Sbjct: 107 AVTRQLSTDDSPRFVNGLLGRLQK 130


>gi|218778410|ref|YP_002429728.1| sun protein [Desulfatibacillum alkenivorans AK-01]
 gi|218759794|gb|ACL02260.1| sun protein [Desulfatibacillum alkenivorans AK-01]
          Length = 455

 Score = 42.0 bits (97), Expect = 0.033,   Method: Compositional matrix adjust.
 Identities = 30/105 (28%), Positives = 47/105 (44%), Gaps = 2/105 (1%)

Query: 52  DTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAG 111
           D  LD E      D      +++GV+  +  ID +ISS    K    ++   + +ILR G
Sbjct: 33  DRALDKEPGLTRKDRALVMALVYGVLRNRGRIDWIISSF--SKTKLKKIQPEILNILRMG 90

Query: 112 VLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRK 156
           V +L+    VP  + +   V +A         KF+N +L  V RK
Sbjct: 91  VFQLLFLDRVPPALAVDSSVEMAKKAAPVFVSKFVNGLLRNVERK 135


>gi|257460184|ref|ZP_05625288.1| transcription antitermination factor NusB [Campylobacter gracilis
           RM3268]
 gi|257442625|gb|EEV17764.1| transcription antitermination factor NusB [Campylobacter gracilis
           RM3268]
          Length = 342

 Score = 41.6 bits (96), Expect = 0.033,   Method: Compositional matrix adjust.
 Identities = 37/133 (27%), Positives = 57/133 (42%), Gaps = 16/133 (12%)

Query: 19  ARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMD 78
           ARLAA+  LY  D+ G    +   EY          L+ E    +    W   ++ G  +
Sbjct: 7   ARLAAISLLYSRDMNGGGE-DFADEY----------LE-EKRIRNEQRNWTLALLRGASE 54

Query: 79  RKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFF 138
               +D LI   L E +  + +  +  +ILR G  EL         ++I+E +  A +  
Sbjct: 55  NLAAVDALIDENLKE-FKLAEISALERAILRLGAYEL-RFTDTDAGIVINEAINSAKEL- 111

Query: 139 YGDEPKFINAVLD 151
            G  P+FIN VLD
Sbjct: 112 -GISPRFINGVLD 123


>gi|154485073|ref|ZP_02027521.1| hypothetical protein EUBVEN_02796 [Eubacterium ventriosum ATCC
           27560]
 gi|149734026|gb|EDM50145.1| hypothetical protein EUBVEN_02796 [Eubacterium ventriosum ATCC
           27560]
          Length = 448

 Score = 41.6 bits (96), Expect = 0.033,   Method: Compositional matrix adjust.
 Identities = 22/84 (26%), Positives = 44/84 (52%), Gaps = 2/84 (2%)

Query: 72  IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
           +  G ++R+  ID +I+     K   +++  ++  ILR GV ++    +VPV  + +E V
Sbjct: 54  LFQGTLERRIEIDFIINQF--SKTPVNKMKPVIREILRMGVYQIKYMDNVPVSAVCNEGV 111

Query: 132 CIAHDFFYGDEPKFINAVLDKVSR 155
            +A    + +   F+N VL  ++R
Sbjct: 112 KLAEKRKFRNLKGFVNGVLRNIAR 135


>gi|226509581|ref|NP_001146662.1| hypothetical protein LOC100280262 [Zea mays]
 gi|219888225|gb|ACL54487.1| unknown [Zea mays]
          Length = 555

 Score = 41.6 bits (96), Expect = 0.035,   Method: Compositional matrix adjust.
 Identities = 26/89 (29%), Positives = 45/89 (50%), Gaps = 1/89 (1%)

Query: 65  DLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVE 124
           D+    VI+ G +  K+++D LI S  +E+  F  ++ +L  ILR G  E+++   VP  
Sbjct: 140 DIRLVTVIVAGTVRWKRYLDYLIMSLCSEEKVFREMEPLLLQILRIGFFEILKL-DVPAY 198

Query: 125 VIISEYVCIAHDFFYGDEPKFINAVLDKV 153
             + E V +A           +NA+L K+
Sbjct: 199 AAVDENVRLAKVALRPGAGNMVNAILRKL 227


>gi|126656189|ref|ZP_01727573.1| transcription antitermination protein NusB [Cyanothece sp. CCY0110]
 gi|126622469|gb|EAZ93175.1| transcription antitermination protein NusB [Cyanothece sp. CCY0110]
          Length = 209

 Score = 41.6 bits (96), Expect = 0.036,   Method: Compositional matrix adjust.
 Identities = 29/88 (32%), Positives = 45/88 (51%), Gaps = 2/88 (2%)

Query: 67  EWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVI 126
           E+   +I  +  R+Q ID  + + L + W   RL  I   ILR  V E++    VP +V 
Sbjct: 118 EYTLELIGTINRRRQEIDQQLEAVLKD-WQLRRLAKIDQDILRLAVAEIL-FLDVPEKVA 175

Query: 127 ISEYVCIAHDFFYGDEPKFINAVLDKVS 154
           I+E V +A  +   D  +FIN VL + +
Sbjct: 176 INEAVELAKRYSDDDGYRFINGVLRRFT 203


>gi|300726454|ref|ZP_07059900.1| NusB family protein [Prevotella bryantii B14]
 gi|299776182|gb|EFI72746.1| NusB family protein [Prevotella bryantii B14]
          Length = 320

 Score = 41.6 bits (96), Expect = 0.036,   Method: Compositional matrix adjust.
 Identities = 20/67 (29%), Positives = 35/67 (52%)

Query: 89  SCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINA 148
           S  +  W FSRL  +   I++  + EL    ++P  V I+EYV +A  +       ++N 
Sbjct: 205 SDASRNWDFSRLAYMDVVIMQIAIAELCTFPNIPASVTINEYVNLAKLYSTPHSGSYVNG 264

Query: 149 VLDKVSR 155
           +LD ++R
Sbjct: 265 MLDGIAR 271


>gi|258545998|ref|ZP_05706232.1| N utilization substance protein B family protein (protein NusB)
           [Cardiobacterium hominis ATCC 15826]
 gi|258518766|gb|EEV87625.1| N utilization substance protein B family protein (protein NusB)
           [Cardiobacterium hominis ATCC 15826]
          Length = 144

 Score = 41.6 bits (96), Expect = 0.037,   Method: Compositional matrix adjust.
 Identities = 40/150 (26%), Positives = 63/150 (42%), Gaps = 15/150 (10%)

Query: 8   KDLKLS--HRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVD 65
           K+LK     +R  AR   +QALYQ  + G     +       R       D++  Y    
Sbjct: 2   KNLKRQAIEQRSRARRQLLQALYQWQMSGDDPWSVRRN----RLVDPKTGDIDDDY---- 53

Query: 66  LEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEV 125
              F      + +++   D  ++     +   S LD +  +IL  G+ ELIE   +   V
Sbjct: 54  ---FNAAFDTISEKRDLYDTRVAEHTHRR--PSTLDPVERAILWIGMYELIERFDIHPTV 108

Query: 126 IISEYVCIAHDFFYGDEPKFINAVLDKVSR 155
            I+E V +A  F   D  K+INA LD + +
Sbjct: 109 TINEAVELAKQFGAADSYKYINATLDHLGK 138


>gi|23336051|ref|ZP_00121280.1| COG0781: Transcription termination factor [Bifidobacterium longum
           DJO10A]
 gi|23464693|ref|NP_695296.1| NusB antitermination protein [Bifidobacterium longum NCC2705]
 gi|189438946|ref|YP_001954027.1| transcription termination factor [Bifidobacterium longum DJO10A]
 gi|227546799|ref|ZP_03976848.1| NusB antitermination factor [Bifidobacterium longum subsp. infantis
           ATCC 55813]
 gi|239620779|ref|ZP_04663810.1| transcription antitermination factor NusB [Bifidobacterium longum
           subsp. infantis CCUG 52486]
 gi|312132387|ref|YP_003999726.1| nusb [Bifidobacterium longum subsp. longum BBMN68]
 gi|322691569|ref|YP_004221139.1| transcription antitermination factor NusB [Bifidobacterium longum
           subsp. longum JCM 1217]
 gi|32171480|sp|Q8G817|NUSB_BIFLO RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|238692035|sp|B3DQ30|NUSB_BIFLD RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|23325257|gb|AAN23932.1| NusB antitermination protein [Bifidobacterium longum NCC2705]
 gi|189427381|gb|ACD97529.1| Transcription termination factor [Bifidobacterium longum DJO10A]
 gi|227212761|gb|EEI80642.1| NusB antitermination factor [Bifidobacterium longum subsp. infantis
           ATCC 55813]
 gi|239516355|gb|EEQ56222.1| transcription antitermination factor NusB [Bifidobacterium longum
           subsp. infantis CCUG 52486]
 gi|291516175|emb|CBK69791.1| transcription antitermination factor NusB [Bifidobacterium longum
           subsp. longum F8]
 gi|311772581|gb|ADQ02069.1| NusB [Bifidobacterium longum subsp. longum BBMN68]
 gi|320456425|dbj|BAJ67047.1| transcription antitermination factor NusB [Bifidobacterium longum
           subsp. longum JCM 1217]
          Length = 190

 Score = 41.6 bits (96), Expect = 0.037,   Method: Compositional matrix adjust.
 Identities = 24/82 (29%), Positives = 41/82 (50%), Gaps = 1/82 (1%)

Query: 72  IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
           I+ GV + ++ ID+ +    T  W   R+ ++  +ILR    E++    VP +V I E +
Sbjct: 48  IVKGVAEHRRQIDMTLDEHST-GWKVRRMGVVDRNILRIAAWEILFTDDVPDKVAIDEAL 106

Query: 132 CIAHDFFYGDEPKFINAVLDKV 153
            +A      D P FI+ +L  V
Sbjct: 107 ALAKTLCDDDSPAFIHGLLSAV 128


>gi|242045062|ref|XP_002460402.1| hypothetical protein SORBIDRAFT_02g027560 [Sorghum bicolor]
 gi|241923779|gb|EER96923.1| hypothetical protein SORBIDRAFT_02g027560 [Sorghum bicolor]
          Length = 574

 Score = 41.6 bits (96), Expect = 0.038,   Method: Composition-based stats.
 Identities = 26/89 (29%), Positives = 45/89 (50%), Gaps = 1/89 (1%)

Query: 65  DLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVE 124
           D+    VI+ G +  K+++D LI S  +E+  F  ++ +L  ILR G  E+++   VP  
Sbjct: 159 DIRLVTVIVAGTVRWKRYLDYLIMSLCSEEKVFREMEPLLLQILRIGFFEILKL-DVPAY 217

Query: 125 VIISEYVCIAHDFFYGDEPKFINAVLDKV 153
             + E V +A           +NA+L K+
Sbjct: 218 AAVDENVKLAKVALRPGAGNMVNAILRKL 246


>gi|167762592|ref|ZP_02434719.1| hypothetical protein BACSTE_00948 [Bacteroides stercoris ATCC
           43183]
 gi|167699698|gb|EDS16277.1| hypothetical protein BACSTE_00948 [Bacteroides stercoris ATCC
           43183]
          Length = 308

 Score = 41.6 bits (96), Expect = 0.039,   Method: Compositional matrix adjust.
 Identities = 21/75 (28%), Positives = 39/75 (52%), Gaps = 2/75 (2%)

Query: 92  TEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLD 151
           T  W   R+  +   I++  + E++   ++PV V ++EYV IA  +       F+N  LD
Sbjct: 234 TRNWDLDRVAFMDVVIMQCALAEILSFPNIPVSVSLNEYVDIAKVYSTAKSGSFVNGTLD 293

Query: 152 KVSRKEEIKRSGCVS 166
            + +  E+K+ G +S
Sbjct: 294 GIVK--ELKKEGKLS 306


>gi|325680270|ref|ZP_08159830.1| ribosomal RNA small subunit methyltransferase B [Ruminococcus albus
           8]
 gi|324107979|gb|EGC02235.1| ribosomal RNA small subunit methyltransferase B [Ruminococcus albus
           8]
          Length = 429

 Score = 41.6 bits (96), Expect = 0.039,   Method: Compositional matrix adjust.
 Identities = 24/94 (25%), Positives = 49/94 (52%), Gaps = 2/94 (2%)

Query: 65  DLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVE 124
           D ++   + +GV++R+  +D +I+     K   ++L+  L +ILR+G+ +L    SVP  
Sbjct: 39  DKKFISALFYGVLERRLTLDAMIAEL--SKNPKNKLNNTLRNILRSGLYQLKYMDSVPDN 96

Query: 125 VIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEE 158
             + E V +A          F+N +L +  R+++
Sbjct: 97  AAVDESVEMAKKLRNPASAGFVNGLLREFIRRDK 130


>gi|312195541|ref|YP_004015602.1| NusB antitermination factor [Frankia sp. EuI1c]
 gi|311226877|gb|ADP79732.1| NusB antitermination factor [Frankia sp. EuI1c]
          Length = 135

 Score = 41.6 bits (96), Expect = 0.041,   Method: Compositional matrix adjust.
 Identities = 35/135 (25%), Positives = 56/135 (41%), Gaps = 14/135 (10%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           R  +R  A+  LY+ D+   S  EI++         D  ++          E+   ++  
Sbjct: 4   RSKSRKRALDILYEADLRSTSPLEILAARSVQN---DPPVN----------EYTSGLVRD 50

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
           V +    ID  I     E W+  R+  +  +ILR  VLE++    VP  V I E V +A 
Sbjct: 51  VTEHLGRIDGFIGEH-AEGWTLERMPAVDRNILRIAVLEMMWRDDVPDRVAIDEAVELAK 109

Query: 136 DFFYGDEPKFINAVL 150
                  P F+N +L
Sbjct: 110 SVSTDRSPAFVNGLL 124


>gi|189219673|ref|YP_001940314.1| transcription termination protein NusB [Methylacidiphilum
           infernorum V4]
 gi|259514863|sp|B3DWQ3|NUSB_METI4 RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|189186531|gb|ACD83716.1| Transcription termination protein NusB [Methylacidiphilum
           infernorum V4]
          Length = 143

 Score = 41.6 bits (96), Expect = 0.041,   Method: Compositional matrix adjust.
 Identities = 41/140 (29%), Positives = 68/140 (48%), Gaps = 14/140 (10%)

Query: 15  RRGIARLAAVQALYQIDI-IGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVII 73
           RR I  L  VQ LYQ ++  G     ++ ++  + F    + D E+V      +W + I 
Sbjct: 4   RRKIRELI-VQFLYQWEMNKGVGLDNMLLDF--WDFSPLDQKDKEAVE-----QWLKEI- 54

Query: 74  HGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCI 133
               + K+ I+  I+S + + WS  RL  +   IL  G+ E++    +P  V I+E V I
Sbjct: 55  ---AEHKEAIEEKINSYV-KNWSLDRLAPVDKCILILGIYEILYRKDIPPAVSINESVEI 110

Query: 134 AHDFFYGDEPKFINAVLDKV 153
           A  +   +  KF+N +LD V
Sbjct: 111 AKKYSTEESGKFVNGILDSV 130


>gi|302392192|ref|YP_003828012.1| sun protein [Acetohalobium arabaticum DSM 5501]
 gi|302204269|gb|ADL12947.1| sun protein [Acetohalobium arabaticum DSM 5501]
          Length = 448

 Score = 41.6 bits (96), Expect = 0.042,   Method: Compositional matrix adjust.
 Identities = 31/139 (22%), Positives = 65/139 (46%), Gaps = 17/139 (12%)

Query: 19  ARLAAVQALYQIDIIGCSTTEIISE-YETYRFC-ADTELDVESVYLHVDLEWFRVIIHGV 76
            R  AV+A+Y+++  G  +  I++  ++ Y     D  L  E             +I+G 
Sbjct: 5   GRQTAVEAVYRVNEEGAYSNLILNHLFKKYNLADQDRGLATE-------------LIYGS 51

Query: 77  MDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHD 136
           +  + H+D +++     +   +++D    +ILR G+ ++    S+P  V  +E V +A D
Sbjct: 52  LRMRNHLDWILNQFADRR--VNKMDKWTRNILRLGLYQIRFLDSIPDAVACNETVELAKD 109

Query: 137 FFYGDEPKFINAVLDKVSR 155
           + +     F+N +L  + R
Sbjct: 110 YQHSGAAGFVNGILRSILR 128


>gi|309389162|gb|ADO77042.1| NusB antitermination factor [Halanaerobium praevalens DSM 2228]
          Length = 133

 Score = 41.6 bits (96), Expect = 0.042,   Method: Compositional matrix adjust.
 Identities = 38/135 (28%), Positives = 60/135 (44%), Gaps = 11/135 (8%)

Query: 20  RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79
           R+ A+Q LY +DI      E  S+     F A+  +  E +Y+         I+ G++  
Sbjct: 10  RIWALQILYGLDIRKKLALEH-SKKSYENFMAEKGVLSEDLYV-------AEILEGIILE 61

Query: 80  KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139
            + +D  I       W   R+  I  +ILR    E+   H +P +V I+E V IA  +  
Sbjct: 62  LELLDAQIDQYAI-NWDIERMPAIDRNILRIAAYEI--QHDIPAKVAINEAVKIAKKYAD 118

Query: 140 GDEPKFINAVLDKVS 154
              P FIN +L K +
Sbjct: 119 DSSPSFINGILSKFA 133


>gi|295090868|emb|CBK76975.1| transcription antitermination factor NusB [Clostridium cf.
           saccharolyticum K10]
          Length = 147

 Score = 41.2 bits (95), Expect = 0.043,   Method: Compositional matrix adjust.
 Identities = 27/100 (27%), Positives = 49/100 (49%), Gaps = 7/100 (7%)

Query: 54  ELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVL 113
           ELDV       D  + +  +  V+++   +D  I+    + W+  R+  +  +ILR  + 
Sbjct: 54  ELDV------YDSGYVKNKVEKVLEKLTELDTAINET-AKGWTTRRMGKVELTILRLALF 106

Query: 114 ELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKV 153
           E+     VP +V I+E V +A  F   + P F+N +L K+
Sbjct: 107 EIRYDEEVPDKVAINEAVELAKKFGGDESPAFVNGILAKL 146


>gi|294783685|ref|ZP_06749009.1| transcription antitermination factor NusB [Fusobacterium sp.
           1_1_41FAA]
 gi|294480563|gb|EFG28340.1| transcription antitermination factor NusB [Fusobacterium sp.
           1_1_41FAA]
          Length = 152

 Score = 41.2 bits (95), Expect = 0.043,   Method: Compositional matrix adjust.
 Identities = 28/128 (21%), Positives = 62/128 (48%), Gaps = 8/128 (6%)

Query: 32  IIGCSTTEIISEY--ETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISS 89
           + G   TE  SE   + +        D  S      L++ +  + G+ +   +I   I +
Sbjct: 27  VFGVEATESTSEELEKAFDIYLSNNEDFVSTLSENQLKFLQTSVKGISENYDNIKDTIKT 86

Query: 90  CLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEP--KFIN 147
             T+ W++ R+ ++  ++L     E ++ ++ P+EV+ +E V +A +  YG+E   +F+N
Sbjct: 87  N-TQNWAYERIGLVERTLLIIATYEFLKANT-PIEVVANETVELAKE--YGNEKSYEFVN 142

Query: 148 AVLDKVSR 155
            +L  + +
Sbjct: 143 GILANIGK 150


>gi|217967431|ref|YP_002352937.1| NusB antitermination factor [Dictyoglomus turgidum DSM 6724]
 gi|254772636|sp|B8E246|NUSB_DICTD RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|217336530|gb|ACK42323.1| NusB antitermination factor [Dictyoglomus turgidum DSM 6724]
          Length = 144

 Score = 41.2 bits (95), Expect = 0.044,   Method: Compositional matrix adjust.
 Identities = 24/88 (27%), Positives = 44/88 (50%), Gaps = 2/88 (2%)

Query: 75  GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134
           G +  K   D +IS   ++ W   R+  I  +ILR  + E+     +P  V ++E V +A
Sbjct: 46  GALYYKDLADEIISK-FSKNWKLERIGTIEKNILRMAIAEMFTFSDIPQGVTVNEAVELA 104

Query: 135 HDFFYGDEPKFINAVLDKVSRK-EEIKR 161
             +   +  +FIN +L  + R  +E+K+
Sbjct: 105 KKYVSPEAGRFINGILRNIVRNWDEVKK 132


>gi|153953852|ref|YP_001394617.1| transcription antitermination protein NusB [Clostridium kluyveri
           DSM 555]
 gi|219854467|ref|YP_002471589.1| hypothetical protein CKR_1124 [Clostridium kluyveri NBRC 12016]
 gi|189035884|sp|A5N7I8|NUSB_CLOK5 RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|254772627|sp|B9E100|NUSB_CLOK1 RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|146346733|gb|EDK33269.1| NusB [Clostridium kluyveri DSM 555]
 gi|219568191|dbj|BAH06175.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 156

 Score = 41.2 bits (95), Expect = 0.044,   Method: Compositional matrix adjust.
 Identities = 23/99 (23%), Positives = 50/99 (50%), Gaps = 1/99 (1%)

Query: 63  HVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVP 122
           ++D+++   ++ G+   +  +++ I   L   W  +RL  +  +IL+    E +    +P
Sbjct: 59  NIDIDYVVRVLRGIEKNEDMLNIEIEKYLRN-WKLNRLSKVDSAILKICTYEFLHEDDIP 117

Query: 123 VEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKR 161
            +V I+E + +A  +       FIN VL  + + E+IK+
Sbjct: 118 EKVSINEAIELAKKYSSEKSASFINGVLGNMIKDEKIKK 156


>gi|89890544|ref|ZP_01202054.1| putative antitermination protein NusB [Flavobacteria bacterium
           BBFL7]
 gi|89517459|gb|EAS20116.1| putative antitermination protein NusB [Flavobacteria bacterium
           BBFL7]
          Length = 312

 Score = 41.2 bits (95), Expect = 0.044,   Method: Compositional matrix adjust.
 Identities = 22/76 (28%), Positives = 41/76 (53%), Gaps = 4/76 (5%)

Query: 92  TEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLD 151
           T  W   R+  I   ++     E ++ +S+PV+V ++EY+ I+ D+       FIN +LD
Sbjct: 233 TPNWEQDRIAQIDLVLIMMAQCEFLKFNSIPVKVSLNEYLEISKDYSTPKSSFFINGILD 292

Query: 152 KVSRKEE----IKRSG 163
            +S++ E    + +SG
Sbjct: 293 NLSKEYEKEGILNKSG 308


>gi|213691632|ref|YP_002322218.1| NusB antitermination factor [Bifidobacterium longum subsp. infantis
           ATCC 15697]
 gi|254772616|sp|B7GPW0|NUSB_BIFLI RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|213523093|gb|ACJ51840.1| NusB antitermination factor [Bifidobacterium longum subsp. infantis
           ATCC 15697]
 gi|320457719|dbj|BAJ68340.1| transcription antitermination factor NusB [Bifidobacterium longum
           subsp. infantis ATCC 15697]
          Length = 187

 Score = 41.2 bits (95), Expect = 0.045,   Method: Compositional matrix adjust.
 Identities = 24/82 (29%), Positives = 41/82 (50%), Gaps = 1/82 (1%)

Query: 72  IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
           I+ GV + ++ ID+ +    T  W   R+ ++  +ILR    E++    VP +V I E +
Sbjct: 48  IVKGVAEHRRQIDMTLDEHST-GWKVRRMGVVDRNILRIAAWEILFNDDVPDKVAIDEAL 106

Query: 132 CIAHDFFYGDEPKFINAVLDKV 153
            +A      D P FI+ +L  V
Sbjct: 107 ALAKTLCDDDSPAFIHGLLSAV 128


>gi|326803320|ref|YP_004321138.1| transcription antitermination factor NusB [Aerococcus urinae
           ACS-120-V-Col10a]
 gi|326650660|gb|AEA00843.1| transcription antitermination factor NusB [Aerococcus urinae
           ACS-120-V-Col10a]
          Length = 194

 Score = 41.2 bits (95), Expect = 0.045,   Method: Compositional matrix adjust.
 Identities = 25/90 (27%), Positives = 47/90 (52%), Gaps = 6/90 (6%)

Query: 68  WFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELI--ECHSVPVEV 125
           +++ ++  +   ++ +D  I   +  KWS +RL+ +  +ILR G  E++  +   VP  V
Sbjct: 94  YYQELLDRIASHQESVDQAIEDHIQGKWSLNRLEAMNLAILRVGAYEILYGDHDRVPGVV 153

Query: 126 IISEYVCIAHDFFYGDEP--KFINAVLDKV 153
            + E + +A    Y DE   +FIN VL  +
Sbjct: 154 AVDEAIHLAR--RYSDEASRRFINGVLSSI 181


>gi|296454538|ref|YP_003661681.1| NusB antitermination factor [Bifidobacterium longum subsp. longum
           JDM301]
 gi|296183970|gb|ADH00852.1| NusB antitermination factor [Bifidobacterium longum subsp. longum
           JDM301]
          Length = 187

 Score = 41.2 bits (95), Expect = 0.045,   Method: Compositional matrix adjust.
 Identities = 24/82 (29%), Positives = 41/82 (50%), Gaps = 1/82 (1%)

Query: 72  IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
           I+ GV + ++ ID+ +    T  W   R+ ++  +ILR    E++    VP +V I E +
Sbjct: 48  IVKGVAEHRRQIDMTLDEHST-GWKVRRMGVVDRNILRIAAWEILFNDDVPDKVAIDEAL 106

Query: 132 CIAHDFFYGDEPKFINAVLDKV 153
            +A      D P FI+ +L  V
Sbjct: 107 ALAKTLCDDDSPAFIHGLLSAV 128


>gi|308234826|ref|ZP_07665563.1| transcription antitermination factor NusB [Gardnerella vaginalis
           ATCC 14018]
 gi|311114640|ref|YP_003985861.1| transcription antitermination factor NusB [Gardnerella vaginalis
           ATCC 14019]
 gi|310946134|gb|ADP38838.1| transcription antitermination factor NusB [Gardnerella vaginalis
           ATCC 14019]
          Length = 176

 Score = 41.2 bits (95), Expect = 0.047,   Method: Compositional matrix adjust.
 Identities = 26/82 (31%), Positives = 42/82 (51%), Gaps = 1/82 (1%)

Query: 72  IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
           II GV +R+  ID  ++   T  W   R+ +I  +ILR  V E++    VP +V I E +
Sbjct: 48  IIRGVGERRNRIDKTLNRYST-GWKVGRMAVIDRNILRIAVWEILLNDEVPDKVAIDEAI 106

Query: 132 CIAHDFFYGDEPKFINAVLDKV 153
            +A  +   D   FI+ +L  +
Sbjct: 107 SLAKMYSDDDAIAFIHGLLSAI 128


>gi|327405408|ref|YP_004346246.1| NusB antitermination factor [Fluviicola taffensis DSM 16823]
 gi|327320916|gb|AEA45408.1| NusB antitermination factor [Fluviicola taffensis DSM 16823]
          Length = 315

 Score = 41.2 bits (95), Expect = 0.048,   Method: Compositional matrix adjust.
 Identities = 24/73 (32%), Positives = 41/73 (56%), Gaps = 6/73 (8%)

Query: 84  DLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEP 143
           +LL+   LT+ W   R+  +   +L+  + EL   +++P +V ++EY+ I+   FY   P
Sbjct: 227 NLLLIDELTDNWELERIAKMDILLLKMAITELQVFNNIPKKVTLNEYIEISK--FYS-TP 283

Query: 144 K---FINAVLDKV 153
           K   FIN +LDK 
Sbjct: 284 KSHGFINGILDKA 296


>gi|157163972|ref|YP_001466235.1| transcription antitermination protein NusB [Campylobacter concisus
           13826]
 gi|166215673|sp|A7ZBS7|NUSB_CAMC1 RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|112801548|gb|EAT98892.1| transcription antitermination factor NusB [Campylobacter concisus
           13826]
          Length = 131

 Score = 41.2 bits (95), Expect = 0.049,   Method: Compositional matrix adjust.
 Identities = 25/79 (31%), Positives = 42/79 (53%), Gaps = 2/79 (2%)

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
           V+  K+ +D ++   L +   FS++     +ILR G+ E+ +       VII+E + +A 
Sbjct: 52  VLANKEKLDEILKPHLKD-GDFSKVGATELAILRLGLYEM-KFSQTDKAVIINEAIELAK 109

Query: 136 DFFYGDEPKFINAVLDKVS 154
           +      PKFIN VLDK+ 
Sbjct: 110 ELGSDQAPKFINGVLDKIK 128


>gi|17545430|ref|NP_518832.1| transcription antitermination protein NusB [Ralstonia solanacearum
           GMI1000]
 gi|17427722|emb|CAD14241.1| probable n utilization substance b homolog (protein nusb).
           transcription regulator [Ralstonia solanacearum GMI1000]
          Length = 161

 Score = 41.2 bits (95), Expect = 0.049,   Method: Compositional matrix adjust.
 Identities = 41/162 (25%), Positives = 71/162 (43%), Gaps = 32/162 (19%)

Query: 4   QDN-----KKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVE 58
           QDN     K   K + RR  AR  A+Q LYQ  ++  +   ++          +  L   
Sbjct: 9   QDNSPAKPKAPPKSARRR--ARELALQGLYQW-LLNRNDPGVV----------EAHLHDA 55

Query: 59  SVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWS------FSRLDMILCSILRAGV 112
             +   D   F  ++HG +  +        + LTE ++       + L  +  + L  G 
Sbjct: 56  QGFNKADRAHFDALLHGAIREE--------ATLTESFTPFLDRPVAELSPVERAALLVGA 107

Query: 113 LELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVS 154
            EL+ C  +P +V+I+E V +A  F   +  K++N VLDK++
Sbjct: 108 YELVHCVDIPYKVVINEAVELAKTFGGVEGYKYVNGVLDKLA 149


>gi|23296076|gb|AAN12293.1| transcription termination factor [Aquifex pyrophilus]
          Length = 144

 Score = 41.2 bits (95), Expect = 0.051,   Method: Compositional matrix adjust.
 Identities = 36/140 (25%), Positives = 59/140 (42%), Gaps = 11/140 (7%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           R  AR  A   LY+ D+ G   +EI  E        +  +  ++ Y     E+ + ++  
Sbjct: 4   RKSARDTAFLVLYRWDLRGDKPSEIFKE-----VVEEKNIQNKNTY-----EYAKKLVET 53

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
            ++    ID +I   L + WS  RL  +  + LR GV EL+   S     +  + + I  
Sbjct: 54  TVNNISEIDAIIEKHL-KGWSIDRLGYVERNALRLGVAELLFLKSQEPGRVFIDIIDIVK 112

Query: 136 DFFYGDEPKFINAVLDKVSR 155
            F      KF+N VL  + R
Sbjct: 113 KFTDEKAAKFVNGVLSAIYR 132


>gi|317481639|ref|ZP_07940674.1| transcription antitermination factor NusB [Bifidobacterium sp.
           12_1_47BFAA]
 gi|322689608|ref|YP_004209342.1| transcription antitermination factor NusB [Bifidobacterium longum
           subsp. infantis 157F]
 gi|316916929|gb|EFV38316.1| transcription antitermination factor NusB [Bifidobacterium sp.
           12_1_47BFAA]
 gi|320460944|dbj|BAJ71564.1| transcription antitermination factor NusB [Bifidobacterium longum
           subsp. infantis 157F]
          Length = 190

 Score = 41.2 bits (95), Expect = 0.051,   Method: Compositional matrix adjust.
 Identities = 24/82 (29%), Positives = 41/82 (50%), Gaps = 1/82 (1%)

Query: 72  IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
           I+ GV + ++ ID+ +    T  W   R+ ++  +ILR    E++    VP +V I E +
Sbjct: 48  IVKGVAEHRRQIDMTLDEHST-GWKVRRMGVVDRNILRIAAWEILFNDDVPDKVAIDEAL 106

Query: 132 CIAHDFFYGDEPKFINAVLDKV 153
            +A      D P FI+ +L  V
Sbjct: 107 ALAKTLCDDDSPAFIHGLLSAV 128


>gi|158313539|ref|YP_001506047.1| NusB antitermination factor [Frankia sp. EAN1pec]
 gi|158108944|gb|ABW11141.1| NusB antitermination factor [Frankia sp. EAN1pec]
          Length = 135

 Score = 41.2 bits (95), Expect = 0.051,   Method: Compositional matrix adjust.
 Identities = 25/89 (28%), Positives = 43/89 (48%), Gaps = 1/89 (1%)

Query: 72  IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
           ++ GV+     ID  I+    + W+  R+  +  +ILR  VLEL     VP  V+I E V
Sbjct: 28  LVEGVVAHLAEIDAHIAR-FAQGWTLDRMPPVDRNILRIAVLELFWRSDVPDRVVIDEAV 86

Query: 132 CIAHDFFYGDEPKFINAVLDKVSRKEEIK 160
            +A        P F+N +L  + +++ + 
Sbjct: 87  RLAKTISTERSPAFVNGLLASLLKEKPVP 115


>gi|327399588|ref|YP_004340457.1| NusB antitermination factor [Hippea maritima DSM 10411]
 gi|327182217|gb|AEA34398.1| NusB antitermination factor [Hippea maritima DSM 10411]
          Length = 133

 Score = 41.2 bits (95), Expect = 0.052,   Method: Compositional matrix adjust.
 Identities = 46/151 (30%), Positives = 74/151 (49%), Gaps = 30/151 (19%)

Query: 12  LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELD-VESVYLHVDLEWFR 70
           +S R+  AR  AVQ +Y        + E  +E   Y F     +D V       D  + +
Sbjct: 1   MSRRK--ARTVAVQYIY--------SKEFGNEDSPYAF-----MDFVGHPKKEDDKAFAK 45

Query: 71  VIIHGVMDRKQHIDLLISSCLTEKWSFSRLD---MILCSILRAGVLELI---ECHSVPVE 124
            +I G +   Q++D++  + L +K++ +  D   +I  SILR G+ EL+   E H V   
Sbjct: 46  KLIDGTI---QNLDII--NNLIKKYASAGDDIMSLIDKSILRVGIYELLFLREAHPV--- 97

Query: 125 VIISEYVCIAHDFFYGDEPKFINAVLDKVSR 155
           V+I+EYV IA +         +NA+LDKV +
Sbjct: 98  VVINEYVNIAKELSKESSKSLVNAILDKVYK 128


>gi|225569232|ref|ZP_03778257.1| hypothetical protein CLOHYLEM_05314 [Clostridium hylemonae DSM
           15053]
 gi|225162031|gb|EEG74650.1| hypothetical protein CLOHYLEM_05314 [Clostridium hylemonae DSM
           15053]
          Length = 434

 Score = 41.2 bits (95), Expect = 0.052,   Method: Compositional matrix adjust.
 Identities = 24/85 (28%), Positives = 44/85 (51%), Gaps = 2/85 (2%)

Query: 72  IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
           +I+G ++    ID +I+     K   +R+  ++ +I+R+GV +L    SVP   + +E V
Sbjct: 50  VINGTLEHLIEIDYIINQF--SKVKVNRMKPVIGAIIRSGVYQLKYMDSVPDSAVCNEAV 107

Query: 132 CIAHDFFYGDEPKFINAVLDKVSRK 156
            +A    +     F+N VL  +SR 
Sbjct: 108 KLAEKRGFASLKAFVNGVLRNISRN 132


>gi|298490714|ref|YP_003720891.1| NusB antitermination factor ['Nostoc azollae' 0708]
 gi|298232632|gb|ADI63768.1| NusB antitermination factor ['Nostoc azollae' 0708]
          Length = 213

 Score = 41.2 bits (95), Expect = 0.053,   Method: Compositional matrix adjust.
 Identities = 30/92 (32%), Positives = 50/92 (54%), Gaps = 4/92 (4%)

Query: 68  WFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVII 127
           + + II  V + +  ID +IS  L + W  +RL  I   IL+    E+ +   VP  + I
Sbjct: 123 YAKEIIITVNENRNVIDQIISDALVD-WQVTRLAQIDRDILQIAAAEM-KFMGVPASIAI 180

Query: 128 SEYVCIAHDFFYGDEP-KFINAVLDKVSRKEE 158
           +E V +A   + GDE  +FIN VL +V+ +++
Sbjct: 181 NEAVELAK-RYSGDEGHRFINGVLRRVTEQKQ 211


>gi|19704937|ref|NP_602432.1| transcription antitermination protein NusB [Fusobacterium nucleatum
           subsp. nucleatum ATCC 25586]
 gi|296329192|ref|ZP_06871693.1| transcription antitermination factor NusB [Fusobacterium nucleatum
           subsp. nucleatum ATCC 23726]
 gi|22095941|sp|Q8RII1|NUSB_FUSNN RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|19712836|gb|AAL93731.1| N utilization substance protein B [Fusobacterium nucleatum subsp.
           nucleatum ATCC 25586]
 gi|296153548|gb|EFG94365.1| transcription antitermination factor NusB [Fusobacterium nucleatum
           subsp. nucleatum ATCC 23726]
          Length = 153

 Score = 41.2 bits (95), Expect = 0.053,   Method: Compositional matrix adjust.
 Identities = 24/92 (26%), Positives = 49/92 (53%), Gaps = 6/92 (6%)

Query: 66  LEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEV 125
           LE+ +  I G+     +I  +I    T+ W++ R+ ++  ++L     E I   + P+EV
Sbjct: 63  LEFLKSSIDGIAKNYDNIKDIIKKN-TQNWAYERIGVVERALLIVATYEFI-FKNAPIEV 120

Query: 126 IISEYVCIAHDFFYGDEP--KFINAVLDKVSR 155
           I +E + +A +  YG+E   +F+N +L  + +
Sbjct: 121 IANEIIELAKE--YGNEKSYEFVNGILANIEK 150


>gi|309806415|ref|ZP_07700424.1| putative transcription antitermination protein NusB [Lactobacillus
           iners LactinV 03V1-b]
 gi|308167197|gb|EFO69367.1| putative transcription antitermination protein NusB [Lactobacillus
           iners LactinV 03V1-b]
          Length = 100

 Score = 41.2 bits (95), Expect = 0.055,   Method: Compositional matrix adjust.
 Identities = 22/79 (27%), Positives = 37/79 (46%)

Query: 72  IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
           I+ GVM  K  ID  ++  L + W+  RL+ I   IL  G+ E+     +     ++E +
Sbjct: 16  ILQGVMKEKSSIDANLTKYLKKGWTLERLNKIDLVILEVGLFEIQNSKVIKPVSALNEAL 75

Query: 132 CIAHDFFYGDEPKFINAVL 150
            +  +F       FIN +L
Sbjct: 76  NMCDEFSSAKSKGFINGIL 94


>gi|284044527|ref|YP_003394867.1| NusB antitermination factor [Conexibacter woesei DSM 14684]
 gi|283948748|gb|ADB51492.1| NusB antitermination factor [Conexibacter woesei DSM 14684]
          Length = 133

 Score = 41.2 bits (95), Expect = 0.055,   Method: Compositional matrix adjust.
 Identities = 27/81 (33%), Positives = 37/81 (45%), Gaps = 7/81 (8%)

Query: 83  IDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIIS------EYVCIAHD 136
            D LIS    E W+  R+  +  SILR  +LE++    VP E  I       E +  A  
Sbjct: 40  FDALISRH-AEGWTLQRIAPLERSILRVSLLEMLHPGDVPAERPIPPEGAIDEAIETAKA 98

Query: 137 FFYGDEPKFINAVLDKVSRKE 157
           +   D P F+N VL  + R E
Sbjct: 99  YCGADAPGFVNGVLAAILRAE 119


>gi|251770860|gb|EES51447.1| transcription antitermination factor (NusB) [Leptospirillum
           ferrodiazotrophum]
          Length = 180

 Score = 41.2 bits (95), Expect = 0.055,   Method: Compositional matrix adjust.
 Identities = 24/75 (32%), Positives = 40/75 (53%), Gaps = 1/75 (1%)

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
           ++ RK  ID +I   L   WS  RL  +  +ILR G+ E++   ++P  V + E + +AH
Sbjct: 66  ILFRKPEIDAVIEE-LARGWSLPRLTRVDRNILRIGLCEILFDPAMPFRVSVHEALDLAH 124

Query: 136 DFFYGDEPKFINAVL 150
            F   +   F+N +L
Sbjct: 125 RFSDPEAVSFLNGIL 139


>gi|22095947|sp|Q8Y1H9|NUSB_RALSO RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
          Length = 155

 Score = 40.8 bits (94), Expect = 0.057,   Method: Compositional matrix adjust.
 Identities = 41/162 (25%), Positives = 71/162 (43%), Gaps = 32/162 (19%)

Query: 4   QDN-----KKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVE 58
           QDN     K   K + RR  AR  A+Q LYQ  ++  +   ++          +  L   
Sbjct: 3   QDNSPAKPKAPPKSARRR--ARELALQGLYQW-LLNRNDPGVV----------EAHLHDA 49

Query: 59  SVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWS------FSRLDMILCSILRAGV 112
             +   D   F  ++HG +  +        + LTE ++       + L  +  + L  G 
Sbjct: 50  QGFNKADRAHFDALLHGAIREE--------ATLTESFTPFLDRPVAELSPVERAALLVGA 101

Query: 113 LELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVS 154
            EL+ C  +P +V+I+E V +A  F   +  K++N VLDK++
Sbjct: 102 YELVHCVDIPYKVVINEAVELAKTFGGVEGYKYVNGVLDKLA 143


>gi|329955547|ref|ZP_08296455.1| transcription antitermination factor NusB [Bacteroides clarus YIT
           12056]
 gi|328525950|gb|EGF52974.1| transcription antitermination factor NusB [Bacteroides clarus YIT
           12056]
          Length = 308

 Score = 40.8 bits (94), Expect = 0.058,   Method: Compositional matrix adjust.
 Identities = 21/75 (28%), Positives = 39/75 (52%), Gaps = 2/75 (2%)

Query: 92  TEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLD 151
           T  W   R+  +   I++  + E++   ++PV V ++EYV IA  +       F+N  LD
Sbjct: 234 TRNWDLDRVAFMDVVIMQCALAEILSFPNIPVSVSLNEYVDIAKVYSTTKSGSFVNGTLD 293

Query: 152 KVSRKEEIKRSGCVS 166
            + +  E+K+ G +S
Sbjct: 294 GIVK--ELKKEGKLS 306


>gi|288918217|ref|ZP_06412572.1| NusB antitermination factor [Frankia sp. EUN1f]
 gi|288350387|gb|EFC84609.1| NusB antitermination factor [Frankia sp. EUN1f]
          Length = 146

 Score = 40.8 bits (94), Expect = 0.059,   Method: Compositional matrix adjust.
 Identities = 30/97 (30%), Positives = 46/97 (47%), Gaps = 2/97 (2%)

Query: 72  IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
           ++ GV+     ID  I+S   + W+  R+  +  +ILR  VLEL     VP  V+I E V
Sbjct: 28  LVEGVVAHLGDIDRHIASH-AQGWAIDRMPPVDRNILRIAVLELFWRTDVPDGVVIDEAV 86

Query: 132 CIAHDFFYGDEPKFINAVLDK-VSRKEEIKRSGCVSA 167
            +A        P F+N +L   +  K ++ R G   A
Sbjct: 87  RLAKTISTERSPAFVNGLLASLLQEKPQLLREGPEPA 123


>gi|302824271|ref|XP_002993780.1| hypothetical protein SELMODRAFT_137586 [Selaginella moellendorffii]
 gi|300138376|gb|EFJ05146.1| hypothetical protein SELMODRAFT_137586 [Selaginella moellendorffii]
          Length = 476

 Score = 40.8 bits (94), Expect = 0.060,   Method: Compositional matrix adjust.
 Identities = 25/87 (28%), Positives = 48/87 (55%), Gaps = 2/87 (2%)

Query: 73  IHGVMDRKQHIDLLISSCL-TEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
           + G++  K+++D +IS+    ++  F R++ IL  +LR G  EL++   VP   +++E V
Sbjct: 68  VAGIVRWKKYLDYVISNVYDKDQNEFERMEPILKQVLRLGAYELLKLE-VPAYAVVNEAV 126

Query: 132 CIAHDFFYGDEPKFINAVLDKVSRKEE 158
            +A+        K  NA+L  V+  +E
Sbjct: 127 KLANAASRAGAGKLANALLRAVASHKE 153


>gi|325265401|ref|ZP_08132125.1| transcription antitermination factor NusB [Clostridium sp. D5]
 gi|324029402|gb|EGB90693.1| transcription antitermination factor NusB [Clostridium sp. D5]
          Length = 132

 Score = 40.8 bits (94), Expect = 0.061,   Method: Compositional matrix adjust.
 Identities = 25/90 (27%), Positives = 43/90 (47%), Gaps = 1/90 (1%)

Query: 65  DLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVE 124
           D E+       ++ +   ID +++   T  W  +R+  +  +ILR    E+     VP  
Sbjct: 43  DKEYITKKFEAIVKKVPEIDAILNEKTT-GWKTTRMSKVDLTILRLATYEMKWDEDVPEG 101

Query: 125 VIISEYVCIAHDFFYGDEPKFINAVLDKVS 154
           V I+E V +A  F   + P F+N VL K++
Sbjct: 102 VAINEAVELAKRFSGEEGPSFVNGVLAKLT 131


>gi|332829206|gb|EGK01870.1| hypothetical protein HMPREF9455_02018 [Dysgonomonas gadei ATCC
           BAA-286]
          Length = 308

 Score = 40.8 bits (94), Expect = 0.062,   Method: Compositional matrix adjust.
 Identities = 17/60 (28%), Positives = 33/60 (55%)

Query: 92  TEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLD 151
           T+ W   R+ ++   I++  + E++   S+P+ V ++EY+ IA  +       FIN +LD
Sbjct: 234 TKNWESERIALMDMVIMQIAIGEIVSFPSIPISVTLNEYIDIAKSYSTAKSASFINGILD 293


>gi|315924276|ref|ZP_07920500.1| N utilization substance protein B [Pseudoramibacter alactolyticus
           ATCC 23263]
 gi|315622437|gb|EFV02394.1| N utilization substance protein B [Pseudoramibacter alactolyticus
           ATCC 23263]
          Length = 158

 Score = 40.8 bits (94), Expect = 0.062,   Method: Compositional matrix adjust.
 Identities = 25/80 (31%), Positives = 41/80 (51%), Gaps = 3/80 (3%)

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECH-SVPVEVIISEYVCIA 134
           V+D    ID  I+  L + W   RL     +ILR    E+  C+   P+E+ I+E V +A
Sbjct: 63  VVDHLAAIDERIAQYLRKDWHMDRLPGAEKAILRVATAEM--CYLDQPLEIAINEAVELA 120

Query: 135 HDFFYGDEPKFINAVLDKVS 154
             +   D P++IN +L+ + 
Sbjct: 121 KRYCDEDAPRYINGILNNLG 140


>gi|167949504|ref|ZP_02536578.1| transcription antitermination protein NusB [Endoriftia persephone
           'Hot96_1+Hot96_2']
          Length = 182

 Score = 40.8 bits (94), Expect = 0.062,   Method: Compositional matrix adjust.
 Identities = 30/109 (27%), Positives = 53/109 (48%), Gaps = 13/109 (11%)

Query: 12  LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71
           +S +R  AR  AVQA+YQ  + G     I   YE  +F  + +L         ++ +F+ 
Sbjct: 1   MSKKRSQARRHAVQAIYQWQMAGQDLAAI---YE--QFLGEQDLS------QFEVPYFKD 49

Query: 72  IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHS 120
           ++HGV +  Q +D L+   L    +   +D +  ++LR GV ++   H 
Sbjct: 50  LLHGVPNNLQELDGLLKPALDR--AIESVDPVERAVLRLGVYDVETPHG 96


>gi|153810477|ref|ZP_01963145.1| hypothetical protein RUMOBE_00858 [Ruminococcus obeum ATCC 29174]
 gi|149833656|gb|EDM88737.1| hypothetical protein RUMOBE_00858 [Ruminococcus obeum ATCC 29174]
          Length = 180

 Score = 40.8 bits (94), Expect = 0.062,   Method: Compositional matrix adjust.
 Identities = 23/76 (30%), Positives = 40/76 (52%), Gaps = 2/76 (2%)

Query: 81  QHIDLL--ISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFF 138
           +H+D +  I +  +  W  +R++ +  + LR  V E+     VPV V I+E V +A  F 
Sbjct: 56  EHLDEIDQILNEYSRGWKTTRMNRVDLTALRLAVYEMKMDEEVPVGVAINEAVELAKLFG 115

Query: 139 YGDEPKFINAVLDKVS 154
             D   F+N +L K++
Sbjct: 116 GEDSGSFVNGILGKIA 131


>gi|218129920|ref|ZP_03458724.1| hypothetical protein BACEGG_01503 [Bacteroides eggerthii DSM 20697]
 gi|317476859|ref|ZP_07936102.1| transcription antitermination factor NusB [Bacteroides eggerthii
           1_2_48FAA]
 gi|217988030|gb|EEC54355.1| hypothetical protein BACEGG_01503 [Bacteroides eggerthii DSM 20697]
 gi|316907034|gb|EFV28745.1| transcription antitermination factor NusB [Bacteroides eggerthii
           1_2_48FAA]
          Length = 308

 Score = 40.8 bits (94), Expect = 0.063,   Method: Compositional matrix adjust.
 Identities = 21/75 (28%), Positives = 39/75 (52%), Gaps = 2/75 (2%)

Query: 92  TEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLD 151
           T  W   R+  +   I++  + E++   ++PV V ++EYV IA  +       F+N  LD
Sbjct: 234 TRNWDLDRVAFMDVVIMQCALAEILSFPNIPVSVSLNEYVDIAKVYSTTKSGSFVNGTLD 293

Query: 152 KVSRKEEIKRSGCVS 166
            + +  E+K+ G +S
Sbjct: 294 GIVK--ELKKEGKLS 306


>gi|229815218|ref|ZP_04445554.1| hypothetical protein COLINT_02264 [Collinsella intestinalis DSM
           13280]
 gi|229809228|gb|EEP44994.1| hypothetical protein COLINT_02264 [Collinsella intestinalis DSM
           13280]
          Length = 216

 Score = 40.8 bits (94), Expect = 0.064,   Method: Compositional matrix adjust.
 Identities = 36/148 (24%), Positives = 66/148 (44%), Gaps = 16/148 (10%)

Query: 10  LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF 69
           LK++  R +AR  A+Q L+Q ++   S  ++++   T          +E           
Sbjct: 4   LKVNRGRTLARSQALQILFQSEMRKVSVEDVLAGDYTLSKGPLAPYAIE----------- 52

Query: 70  RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELI--ECHSVPVEVII 127
             I  GV   +  ID  + + ++  W+  R+     ++LRA V EL      ++   V+I
Sbjct: 53  --IARGVSANRDRIDSALRA-VSANWTLERMPGADRNLLRAAVYELYFQVADTLDAAVVI 109

Query: 128 SEYVCIAHDFFYGDEPKFINAVLDKVSR 155
           +E V IA  +   +   F+N VL ++ R
Sbjct: 110 NEAVEIAKAYGTDESAGFVNGVLGRIVR 137


>gi|163787968|ref|ZP_02182414.1| putative N utilization substance protein [Flavobacteriales
           bacterium ALC-1]
 gi|159876288|gb|EDP70346.1| putative N utilization substance protein [Flavobacteriales
           bacterium ALC-1]
          Length = 303

 Score = 40.8 bits (94), Expect = 0.065,   Method: Compositional matrix adjust.
 Identities = 23/72 (31%), Positives = 37/72 (51%)

Query: 89  SCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINA 148
           S  T  W   RL  +   +L+  + E  +  S+P +V I+EY+ IA  +       FIN 
Sbjct: 221 SAKTTNWDSERLASLDGVLLKMALCEFQKFSSIPYKVTINEYLEIAKAYSTPKSSLFING 280

Query: 149 VLDKVSRKEEIK 160
           +LDKV ++ + K
Sbjct: 281 ILDKVVKEYQSK 292


>gi|33242357|ref|NP_877298.1| transcription antitermination protein NusB [Chlamydophila
           pneumoniae TW-183]
 gi|33236868|gb|AAP98955.1| hypothetical protein CpB1026 [Chlamydophila pneumoniae TW-183]
          Length = 131

 Score = 40.8 bits (94), Expect = 0.067,   Method: Compositional matrix adjust.
 Identities = 21/79 (26%), Positives = 43/79 (54%), Gaps = 1/79 (1%)

Query: 75  GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134
            ++++ Q +DL+I + L  K SF  LD++  ++LR  + E      +   ++I+E + + 
Sbjct: 41  SILEKSQELDLIIGNALKNK-SFDSLDLVEKNVLRLTLFEHFYSPPINKAILIAEAIRLV 99

Query: 135 HDFFYGDEPKFINAVLDKV 153
             F Y +   FI A+L+ +
Sbjct: 100 KKFSYSEACPFIQAILNDI 118


>gi|315604186|ref|ZP_07879252.1| ribosomal RNA small subunit methyltransferase B [Actinomyces sp.
           oral taxon 180 str. F0310]
 gi|315313892|gb|EFU61943.1| ribosomal RNA small subunit methyltransferase B [Actinomyces sp.
           oral taxon 180 str. F0310]
          Length = 490

 Score = 40.8 bits (94), Expect = 0.068,   Method: Compositional matrix adjust.
 Identities = 27/97 (27%), Positives = 49/97 (50%), Gaps = 3/97 (3%)

Query: 72  IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
           ++HG +     +D +I+  +    S S+LD  +  +LR G  +L++   VP    +S  V
Sbjct: 65  LVHGTLRAMGWLDWVIARHVDR--SLSQLDPRVLVLLRVGAHQLLDMR-VPDHAAVSATV 121

Query: 132 CIAHDFFYGDEPKFINAVLDKVSRKEEIKRSGCVSAI 168
            +A +       +FINAVL  ++R+   +R   + AI
Sbjct: 122 DVAREHLTDGPVRFINAVLRSITREGPGEREAALEAI 158


>gi|53804263|ref|YP_114097.1| N utilization substance protein B [Methylococcus capsulatus str.
           Bath]
 gi|81681940|sp|Q607V0|NUSB_METCA RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|53758024|gb|AAU92315.1| N utilization substance protein B [Methylococcus capsulatus str.
           Bath]
          Length = 198

 Score = 40.8 bits (94), Expect = 0.068,   Method: Compositional matrix adjust.
 Identities = 23/91 (25%), Positives = 47/91 (51%), Gaps = 2/91 (2%)

Query: 64  VDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPV 123
           V + +F+ ++HGV +    +D  ++  L        +D +  +ILR G  E +     P 
Sbjct: 96  VQVGYFKELLHGVANNLALLDAALAKYLDR--PIDEVDPVERAILRIGCYEFMRRPETPY 153

Query: 124 EVIISEYVCIAHDFFYGDEPKFINAVLDKVS 154
            VI++E + +A +F      +++N +LD+V+
Sbjct: 154 RVILNEAINLAKEFGAAQSYRYVNGILDRVA 184


>gi|305664845|ref|YP_003861132.1| putative N utilization substance protein [Maribacter sp. HTCC2170]
 gi|88707967|gb|EAR00206.1| putative N utilization substance protein [Maribacter sp. HTCC2170]
          Length = 304

 Score = 40.8 bits (94), Expect = 0.068,   Method: Compositional matrix adjust.
 Identities = 23/77 (29%), Positives = 40/77 (51%), Gaps = 2/77 (2%)

Query: 92  TEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLD 151
           T  W   R+  I   +L+  + EL+   S+P +V I+E++ IA ++       FIN +LD
Sbjct: 225 TPNWDKDRIADIDAILLKMAICELLNFPSIPEKVTINEFLEIAKEYSTPKSSIFINGILD 284

Query: 152 KVSRKEEIKRSGCVSAI 168
           K+ +  E K  G +  +
Sbjct: 285 KLVK--EYKTEGKLKKV 299


>gi|332293207|ref|YP_004431816.1| NusB antitermination factor [Krokinobacter diaphorus 4H-3-7-5]
 gi|332171293|gb|AEE20548.1| NusB antitermination factor [Krokinobacter diaphorus 4H-3-7-5]
          Length = 314

 Score = 40.8 bits (94), Expect = 0.068,   Method: Compositional matrix adjust.
 Identities = 21/76 (27%), Positives = 42/76 (55%), Gaps = 4/76 (5%)

Query: 92  TEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLD 151
           T  W   R+  +   +++  + E ++  ++PV+V I+EY+ IA ++       FIN +LD
Sbjct: 235 TPNWDKERIADVDMVLIKMALCEFLKFPTIPVKVTINEYLEIAKEYSTPKSSIFINGILD 294

Query: 152 KVSRKEE----IKRSG 163
           K+ ++ E    +K+ G
Sbjct: 295 KLVKQYESEKRLKKEG 310


>gi|118595243|ref|ZP_01552590.1| transcription antitermination protein NusB [Methylophilales
           bacterium HTCC2181]
 gi|118441021|gb|EAV47648.1| transcription antitermination protein NusB [Methylophilales
           bacterium HTCC2181]
          Length = 155

 Score = 40.8 bits (94), Expect = 0.068,   Method: Compositional matrix adjust.
 Identities = 34/125 (27%), Positives = 60/125 (48%), Gaps = 7/125 (5%)

Query: 40  IISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSR 99
           I+++++  +   D   D +  ++  D   +  I+ GV +    +   I + L    S+  
Sbjct: 33  IVNQFDINQIKKDIREDPD--FVRSDESMYLSIVEGVHNNFDSLKEEIKTYLDR--SYDE 88

Query: 100 LDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKV---SRK 156
           L  I  +IL + + EL     VP  V+I+E + +A  F   D  KFIN +L+K    +RK
Sbjct: 89  LSPIELAILFSSLYELKFSLDVPYRVVINEAIEVAKSFGGVDGFKFINGILNKAAQHNRK 148

Query: 157 EEIKR 161
            E+ R
Sbjct: 149 NELSR 153


>gi|20807946|ref|NP_623117.1| tRNA and rRNA cytosine-C5-methylase [Thermoanaerobacter
           tengcongensis MB4]
 gi|254479565|ref|ZP_05092880.1| ribosomal RNA small subunit methyltransferase B [Carboxydibrachium
           pacificum DSM 12653]
 gi|20516516|gb|AAM24721.1| tRNA and rRNA cytosine-C5-methylases [Thermoanaerobacter
           tengcongensis MB4]
 gi|214034503|gb|EEB75262.1| ribosomal RNA small subunit methyltransferase B [Carboxydibrachium
           pacificum DSM 12653]
          Length = 443

 Score = 40.8 bits (94), Expect = 0.068,   Method: Compositional matrix adjust.
 Identities = 27/95 (28%), Positives = 47/95 (49%), Gaps = 5/95 (5%)

Query: 64  VDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPV 123
           VD  + + +++GV++RK  +D ++S  + +       D     +L  G+ +L+    VP 
Sbjct: 37  VDAAFVKELVYGVIERKYTLDFILSFFIKKSA-----DTKALLLLEMGLYQLLYMDKVPD 91

Query: 124 EVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEE 158
              I+E V IA  F       F+NAVL    R++E
Sbjct: 92  YAAINETVEIAKKFLSKKGASFLNAVLRSYLREKE 126


>gi|237713467|ref|ZP_04543948.1| conserved hypothetical protein [Bacteroides sp. D1]
 gi|262407253|ref|ZP_06083801.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
 gi|294644674|ref|ZP_06722424.1| transcription antitermination factor NusB [Bacteroides ovatus SD CC
           2a]
 gi|294809065|ref|ZP_06767787.1| transcription antitermination factor NusB [Bacteroides
           xylanisolvens SD CC 1b]
 gi|298482673|ref|ZP_07000857.1| NusB family protein [Bacteroides sp. D22]
 gi|229446449|gb|EEO52240.1| conserved hypothetical protein [Bacteroides sp. D1]
 gi|262354061|gb|EEZ03153.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
 gi|292640008|gb|EFF58276.1| transcription antitermination factor NusB [Bacteroides ovatus SD CC
           2a]
 gi|294443790|gb|EFG12535.1| transcription antitermination factor NusB [Bacteroides
           xylanisolvens SD CC 1b]
 gi|295087143|emb|CBK68666.1| transcription antitermination factor NusB [Bacteroides
           xylanisolvens XB1A]
 gi|298271136|gb|EFI12713.1| NusB family protein [Bacteroides sp. D22]
          Length = 308

 Score = 40.8 bits (94), Expect = 0.069,   Method: Compositional matrix adjust.
 Identities = 20/75 (26%), Positives = 39/75 (52%), Gaps = 2/75 (2%)

Query: 92  TEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLD 151
           T+ W   R+  +   I++  + E++   ++PV V ++EYV IA  +       FIN  LD
Sbjct: 234 TKNWDLDRIAFMDVIIMQTALAEILSFPNIPVSVSLNEYVEIAKLYSTAKSGSFINGTLD 293

Query: 152 KVSRKEEIKRSGCVS 166
            +    ++K+ G ++
Sbjct: 294 GIVN--QLKKEGKLT 306


>gi|15618897|ref|NP_225183.1| transcription antitermination protein NusB [Chlamydophila
           pneumoniae CWL029]
 gi|15836520|ref|NP_301044.1| transcription antitermination protein NusB [Chlamydophila
           pneumoniae J138]
 gi|7387979|sp|Q9Z6S0|NUSB_CHLPN RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|4377317|gb|AAD19126.1| CT832 hypothetical protein [Chlamydophila pneumoniae CWL029]
 gi|8979362|dbj|BAA99196.1| CT832 hypothetical protein [Chlamydophila pneumoniae J138]
          Length = 160

 Score = 40.8 bits (94), Expect = 0.069,   Method: Compositional matrix adjust.
 Identities = 21/79 (26%), Positives = 43/79 (54%), Gaps = 1/79 (1%)

Query: 75  GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134
            ++++ Q +DL+I + L  K SF  LD++  ++LR  + E      +   ++I+E + + 
Sbjct: 70  SILEKSQELDLIIGNALKNK-SFDSLDLVEKNVLRLTLFEHFYSPPINKAILIAEAIRLV 128

Query: 135 HDFFYGDEPKFINAVLDKV 153
             F Y +   FI A+L+ +
Sbjct: 129 KKFSYSEACPFIQAILNDI 147


>gi|269302790|gb|ACZ32890.1| transcription antitermination factor NusB [Chlamydophila pneumoniae
           LPCoLN]
          Length = 160

 Score = 40.8 bits (94), Expect = 0.070,   Method: Compositional matrix adjust.
 Identities = 21/79 (26%), Positives = 44/79 (55%), Gaps = 1/79 (1%)

Query: 75  GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134
            ++++ Q +DL+I + L  K SF  LD++  ++LR  + E      +   ++I+E + + 
Sbjct: 70  SILEKSQELDLIIGNALKNK-SFDSLDLVEKNVLRLTLFEHFYSPPINKAILIAEAIRLV 128

Query: 135 HDFFYGDEPKFINAVLDKV 153
             F Y +   FI+A+L+ +
Sbjct: 129 KKFSYSEACPFIHAILNDI 147


>gi|268680366|ref|YP_003304797.1| transcription antitermination factor NusB [Sulfurospirillum
           deleyianum DSM 6946]
 gi|268618397|gb|ACZ12762.1| transcription antitermination factor NusB [Sulfurospirillum
           deleyianum DSM 6946]
          Length = 136

 Score = 40.8 bits (94), Expect = 0.070,   Method: Compositional matrix adjust.
 Identities = 29/87 (33%), Positives = 44/87 (50%), Gaps = 2/87 (2%)

Query: 74  HGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCI 133
            GV      ID  I+  L E W+ S + M+  +ILR G  E++    +   V+I+E + +
Sbjct: 51  QGVKAHLSVIDEAINRHLKE-WNLSEIGMLERAILRLGGYEIL-YSELDNAVVINEAIEL 108

Query: 134 AHDFFYGDEPKFINAVLDKVSRKEEIK 160
           A        PKFIN VLD + ++ E K
Sbjct: 109 AKKLCNETSPKFINGVLDAICKEGEAK 135


>gi|323435897|ref|ZP_01048839.2| NusB family protein [Dokdonia donghaensis MED134]
 gi|321496212|gb|EAQ40073.2| NusB family protein [Dokdonia donghaensis MED134]
          Length = 314

 Score = 40.8 bits (94), Expect = 0.072,   Method: Compositional matrix adjust.
 Identities = 20/76 (26%), Positives = 42/76 (55%), Gaps = 4/76 (5%)

Query: 92  TEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLD 151
           T  W   R+  +   +++  + E ++  ++PV+V I+EY+ I+ ++       FIN +LD
Sbjct: 235 TPNWDKERIADVDMVLIKMALCEFLKFPTIPVKVTINEYLEISKEYSTPKSSIFINGILD 294

Query: 152 KV----SRKEEIKRSG 163
           K+     R++ +K+ G
Sbjct: 295 KLVKQYEREKRLKKEG 310


>gi|293370796|ref|ZP_06617342.1| transcription antitermination factor NusB [Bacteroides ovatus SD
           CMC 3f]
 gi|292634156|gb|EFF52699.1| transcription antitermination factor NusB [Bacteroides ovatus SD
           CMC 3f]
          Length = 308

 Score = 40.8 bits (94), Expect = 0.073,   Method: Compositional matrix adjust.
 Identities = 20/75 (26%), Positives = 39/75 (52%), Gaps = 2/75 (2%)

Query: 92  TEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLD 151
           T+ W   R+  +   I++  + E++   ++PV V ++EYV IA  +       FIN  LD
Sbjct: 234 TKNWDLDRIAFMDVIIMQTALAEILSFPNIPVSVSLNEYVEIAKLYSTAKSGSFINGTLD 293

Query: 152 KVSRKEEIKRSGCVS 166
            +    ++K+ G ++
Sbjct: 294 GIVN--QLKKEGKLT 306


>gi|167766576|ref|ZP_02438629.1| hypothetical protein CLOSS21_01082 [Clostridium sp. SS2/1]
 gi|167711699|gb|EDS22278.1| hypothetical protein CLOSS21_01082 [Clostridium sp. SS2/1]
          Length = 167

 Score = 40.4 bits (93), Expect = 0.074,   Method: Compositional matrix adjust.
 Identities = 23/67 (34%), Positives = 32/67 (47%)

Query: 89  SCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINA 148
           S  T  W+  RL     SILR    E++    VP +V I+E V +A  +       FIN 
Sbjct: 96  SAHTNAWNLERLGKAELSILRLATYEILLDEQVPRKVAINEAVELAKKYCNEKAAPFING 155

Query: 149 VLDKVSR 155
           VL K+ +
Sbjct: 156 VLSKIGQ 162


>gi|160887367|ref|ZP_02068370.1| hypothetical protein BACOVA_05386 [Bacteroides ovatus ATCC 8483]
 gi|237722651|ref|ZP_04553132.1| conserved hypothetical protein [Bacteroides sp. 2_2_4]
 gi|299148943|ref|ZP_07042005.1| NusB family protein [Bacteroides sp. 3_1_23]
 gi|156107778|gb|EDO09523.1| hypothetical protein BACOVA_05386 [Bacteroides ovatus ATCC 8483]
 gi|229448461|gb|EEO54252.1| conserved hypothetical protein [Bacteroides sp. 2_2_4]
 gi|298513704|gb|EFI37591.1| NusB family protein [Bacteroides sp. 3_1_23]
          Length = 308

 Score = 40.4 bits (93), Expect = 0.074,   Method: Compositional matrix adjust.
 Identities = 20/75 (26%), Positives = 39/75 (52%), Gaps = 2/75 (2%)

Query: 92  TEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLD 151
           T+ W   R+  +   I++  + E++   ++PV V ++EYV IA  +       FIN  LD
Sbjct: 234 TKNWDLDRIAFMDVIIMQTALAEILSFPNIPVSVSLNEYVEIAKLYSTAKSGSFINGTLD 293

Query: 152 KVSRKEEIKRSGCVS 166
            +    ++K+ G ++
Sbjct: 294 GIVN--QLKKEGKLT 306


>gi|295108281|emb|CBL22234.1| transcription antitermination factor NusB [Ruminococcus obeum
           A2-162]
          Length = 171

 Score = 40.4 bits (93), Expect = 0.075,   Method: Compositional matrix adjust.
 Identities = 21/60 (35%), Positives = 32/60 (53%)

Query: 95  WSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVS 154
           W  +R++ +  + LR  V E+     VPV V I+E V +A  F   D   F+N VL K++
Sbjct: 72  WKTTRMNRVDLTALRLAVYEMKMDEDVPVGVAINEAVELAKLFGGEDSGSFVNGVLGKIA 131


>gi|218289636|ref|ZP_03493856.1| NusB antitermination factor [Alicyclobacillus acidocaldarius LAA1]
 gi|218240286|gb|EED07469.1| NusB antitermination factor [Alicyclobacillus acidocaldarius LAA1]
          Length = 165

 Score = 40.4 bits (93), Expect = 0.076,   Method: Compositional matrix adjust.
 Identities = 35/135 (25%), Positives = 61/135 (45%), Gaps = 10/135 (7%)

Query: 19  ARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMD 78
           AR  A+QAL  +D+      ++ S        A+  LD    + +++      ++ G   
Sbjct: 6   ARECALQALCVLDV----QRDLGSAEAIASVLAERGLDAGGDWAYIE-----ELVDGTRR 56

Query: 79  RKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFF 138
               ID L++  + E+WS  R+  +  ++LR    EL+    +P+   I E V IA  F 
Sbjct: 57  HLGEIDELLARHM-ERWSPERIGRVERNVLRLATYELLFEPELPIASAIDEAVQIAKTFA 115

Query: 139 YGDEPKFINAVLDKV 153
                +F+N VL K+
Sbjct: 116 TEQSGRFVNGVLAKL 130


>gi|16752038|ref|NP_445404.1| transcription antitermination protein NusB [Chlamydophila
           pneumoniae AR39]
 gi|7189778|gb|AAF38655.1| N utilization substance protein B, putative [Chlamydophila
           pneumoniae AR39]
          Length = 163

 Score = 40.4 bits (93), Expect = 0.076,   Method: Compositional matrix adjust.
 Identities = 23/81 (28%), Positives = 46/81 (56%), Gaps = 5/81 (6%)

Query: 75  GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVE--VIISEYVC 132
            ++++ Q +DL+I + L  K SF  LD++  ++LR  + E    +S P+   ++I+E + 
Sbjct: 73  SILEKSQELDLIIGNALKNK-SFDSLDLVEKNVLRLTLFE--HFYSPPINKAILIAEAIR 129

Query: 133 IAHDFFYGDEPKFINAVLDKV 153
           +   F Y +   FI A+L+ +
Sbjct: 130 LVKKFSYSEACPFIQAILNDI 150


>gi|317498987|ref|ZP_07957269.1| transcription antitermination factor NusB [Lachnospiraceae
           bacterium 5_1_63FAA]
 gi|316893736|gb|EFV15936.1| transcription antitermination factor NusB [Lachnospiraceae
           bacterium 5_1_63FAA]
          Length = 171

 Score = 40.4 bits (93), Expect = 0.077,   Method: Compositional matrix adjust.
 Identities = 23/67 (34%), Positives = 32/67 (47%)

Query: 89  SCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINA 148
           S  T  W+  RL     SILR    E++    VP +V I+E V +A  +       FIN 
Sbjct: 100 SAHTNAWNLERLGKAELSILRLATYEILLDEQVPRKVAINEAVELAKKYCNEKAAPFING 159

Query: 149 VLDKVSR 155
           VL K+ +
Sbjct: 160 VLSKIGQ 166


>gi|325680657|ref|ZP_08160195.1| transcription antitermination factor NusB [Ruminococcus albus 8]
 gi|324107437|gb|EGC01715.1| transcription antitermination factor NusB [Ruminococcus albus 8]
          Length = 137

 Score = 40.4 bits (93), Expect = 0.077,   Method: Compositional matrix adjust.
 Identities = 24/90 (26%), Positives = 49/90 (54%), Gaps = 3/90 (3%)

Query: 72  IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
           ++  V D+++ +D +IS   ++K + +R+  +  ++LR  + E +    VPV V ISE V
Sbjct: 48  LVRCVFDKQEELDSIISKY-SDKRALNRIPKVDLAVLRIAIYEALYDDKVPVNVAISEAV 106

Query: 132 CIAHDFFYGDEPKFINAVLDKVSRKEEIKR 161
            +   +    +  F+N +L   S+  E+K+
Sbjct: 107 SLTEKYALEPDVSFVNGLLGAFSK--ELKK 134


>gi|260171339|ref|ZP_05757751.1| putative N utilization substance protein [Bacteroides sp. D2]
 gi|315919650|ref|ZP_07915890.1| conserved hypothetical protein [Bacteroides sp. D2]
 gi|313693525|gb|EFS30360.1| conserved hypothetical protein [Bacteroides sp. D2]
          Length = 308

 Score = 40.4 bits (93), Expect = 0.077,   Method: Compositional matrix adjust.
 Identities = 20/75 (26%), Positives = 39/75 (52%), Gaps = 2/75 (2%)

Query: 92  TEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLD 151
           T+ W   R+  +   I++  + E++   ++PV V ++EYV IA  +       FIN  LD
Sbjct: 234 TKNWDLDRIAFMDVIIMQTALAEILSFPNIPVSVSLNEYVEIAKLYSTAKSGSFINGTLD 293

Query: 152 KVSRKEEIKRSGCVS 166
            +    ++K+ G ++
Sbjct: 294 GIVN--QLKKEGKLT 306


>gi|160945199|ref|ZP_02092425.1| hypothetical protein FAEPRAM212_02718 [Faecalibacterium prausnitzii
           M21/2]
 gi|158442930|gb|EDP19935.1| hypothetical protein FAEPRAM212_02718 [Faecalibacterium prausnitzii
           M21/2]
 gi|295105571|emb|CBL03115.1| transcription antitermination factor NusB [Faecalibacterium
           prausnitzii SL3/3]
          Length = 148

 Score = 40.4 bits (93), Expect = 0.079,   Method: Compositional matrix adjust.
 Identities = 24/101 (23%), Positives = 46/101 (45%), Gaps = 1/101 (0%)

Query: 70  RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISE 129
           R++++   D    +D  I S L   W+  RL  +  ++LR  V E++        V I+E
Sbjct: 49  RLLLNAYYDHSAEVDDEIRSHLR-NWTMERLPRVSLTVLRLAVAEMLFGGENKPGVAINE 107

Query: 130 YVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRSGCVSAITQ 170
            V +   +  G++ +F+N +L  V+R   +       +  Q
Sbjct: 108 AVELTKKYGAGEDYQFVNGLLGAVARDHGLSDEAVAESAEQ 148


>gi|57168521|ref|ZP_00367654.1| transcription antitermination factor NusB [Campylobacter coli
           RM2228]
 gi|305432938|ref|ZP_07402096.1| transcription antitermination factor NusB [Campylobacter coli JV20]
 gi|57020026|gb|EAL56703.1| transcription antitermination factor NusB [Campylobacter coli
           RM2228]
 gi|304444092|gb|EFM36747.1| transcription antitermination factor NusB [Campylobacter coli JV20]
          Length = 132

 Score = 40.4 bits (93), Expect = 0.079,   Method: Compositional matrix adjust.
 Identities = 25/77 (32%), Positives = 39/77 (50%), Gaps = 2/77 (2%)

Query: 75  GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134
           G++     ID  ++  L E     +L  I  +ILR G  EL+     P  ++I+E + +A
Sbjct: 51  GIIKNLDDIDKNLNPYLNEN-EIEKLGHIERAILRLGAYELL-FTDTPNAIVINEAIELA 108

Query: 135 HDFFYGDEPKFINAVLD 151
            +    + PKFIN VLD
Sbjct: 109 KELANDNSPKFINGVLD 125


>gi|307265164|ref|ZP_07546723.1| NusB antitermination factor [Thermoanaerobacter wiegelii Rt8.B1]
 gi|306919786|gb|EFN50001.1| NusB antitermination factor [Thermoanaerobacter wiegelii Rt8.B1]
          Length = 140

 Score = 40.4 bits (93), Expect = 0.082,   Method: Compositional matrix adjust.
 Identities = 36/141 (25%), Positives = 62/141 (43%), Gaps = 14/141 (9%)

Query: 15  RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74
            R  AR   V+ LYQ D+     ++I   +  Y+     E            E+    + 
Sbjct: 2   NRTEAREWVVKMLYQYDVSRLPISKIFENF--YKENDPGE----------QKEYIENTVI 49

Query: 75  GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134
           G ++  + ID  I    ++ W+ +R+  I  +ILR  + E+ +  ++PV + I+E V IA
Sbjct: 50  GAIEHLEEIDKEIER-YSQNWALNRMPKIDLAILRCSIYEM-QYGNIPVNISINEAVEIA 107

Query: 135 HDFFYGDEPKFINAVLDKVSR 155
             +   D   FIN +L    R
Sbjct: 108 KKYSTEDSHVFINGLLGAFVR 128


>gi|226356156|ref|YP_002785896.1| N utilization substance protein B (Protein nusB)(NusB
           antitermination factor) [Deinococcus deserti VCD115]
 gi|259514814|sp|C1CVC5|NUSB_DEIDV RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|226318146|gb|ACO46142.1| putative N utilization substance protein B (Protein nusB)(NusB
           antitermination factor) [Deinococcus deserti VCD115]
          Length = 168

 Score = 40.4 bits (93), Expect = 0.082,   Method: Compositional matrix adjust.
 Identities = 27/99 (27%), Positives = 45/99 (45%), Gaps = 4/99 (4%)

Query: 72  IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
           ++ G+   +  ID  +   +   WSF ++     ++LR    ELI   + P   +I   V
Sbjct: 68  LVRGLEKHRADIDTTLRRTI-RGWSFDQMAQTDLNVLRLATFELIYT-AEPHPPVIESAV 125

Query: 132 CIAHDFFYGDEPKFINAVLDKVSRKEEIKRSGCVSAITQ 170
            IA  F   D  +F+N VL  +SR   ++ +G   A  Q
Sbjct: 126 RIARKFGGDDSGRFVNGVLAGLSRS--LQSAGVAKADEQ 162


>gi|86609546|ref|YP_478308.1| transcription antitermination protein NusB [Synechococcus sp.
           JA-2-3B'a(2-13)]
 gi|119390840|sp|Q2JHC7|NUSB_SYNJB RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|86558088|gb|ABD03045.1| transcription antitermination factor NusB [Synechococcus sp.
           JA-2-3B'a(2-13)]
          Length = 291

 Score = 40.4 bits (93), Expect = 0.082,   Method: Compositional matrix adjust.
 Identities = 25/74 (33%), Positives = 37/74 (50%), Gaps = 1/74 (1%)

Query: 80  KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139
           K+ ID  +   L   W   R+  I   ILR  V+E+    S PV+V I+E V +A  +  
Sbjct: 197 KEAIDARLQKALV-GWQLQRVGRIERDILRLAVVEMEILASSPVKVAINEAVELAKKYGD 255

Query: 140 GDEPKFINAVLDKV 153
            +   F+N VL +V
Sbjct: 256 PEAAAFVNGVLRRV 269


>gi|254423258|ref|ZP_05036976.1| transcription antitermination factor NusB, putative [Synechococcus
           sp. PCC 7335]
 gi|196190747|gb|EDX85711.1| transcription antitermination factor NusB, putative [Synechococcus
           sp. PCC 7335]
          Length = 281

 Score = 40.4 bits (93), Expect = 0.083,   Method: Compositional matrix adjust.
 Identities = 25/77 (32%), Positives = 42/77 (54%), Gaps = 2/77 (2%)

Query: 80  KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139
           ++ ID  ++  + EKWS  RL  +   ILR  ++E++    VP +V I E + +A  +  
Sbjct: 206 QKAIDAQLNEAM-EKWSIRRLARVDRDILRLAMIEIV-YMDVPKKVAIDEAIEMAKRYSD 263

Query: 140 GDEPKFINAVLDKVSRK 156
            D  +FIN VL + + K
Sbjct: 264 EDGYRFINGVLRRTTDK 280


>gi|157738073|ref|YP_001490757.1| transcription antitermination protein NusB [Arcobacter butzleri
           RM4018]
 gi|315636425|ref|ZP_07891669.1| transcription antitermination factor NusB [Arcobacter butzleri
           JV22]
 gi|166918802|sp|A8EVW4|NUSB_ARCB4 RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|157699927|gb|ABV68087.1| transcription termination factor NusB [Arcobacter butzleri RM4018]
 gi|315479291|gb|EFU69980.1| transcription antitermination factor NusB [Arcobacter butzleri
           JV22]
          Length = 131

 Score = 40.4 bits (93), Expect = 0.084,   Method: Compositional matrix adjust.
 Identities = 25/82 (30%), Positives = 43/82 (52%), Gaps = 2/82 (2%)

Query: 72  IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
           + +G +     ID  I S L +  + S +  +  SILR  + E++   S+P  +II+E +
Sbjct: 49  LFNGTIKNLSQIDENIVSNLNQ-GTLSDIGSVEKSILRLAIYEIL-FESLPKAIIINEAI 106

Query: 132 CIAHDFFYGDEPKFINAVLDKV 153
            ++        PKFIN +LDK+
Sbjct: 107 ELSKRLASDGAPKFINGLLDKI 128


>gi|93007217|ref|YP_581654.1| NusB antitermination factor [Psychrobacter cryohalolentis K5]
 gi|119390802|sp|Q1Q833|NUSB_PSYCK RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|92394895|gb|ABE76170.1| NusB antitermination factor [Psychrobacter cryohalolentis K5]
          Length = 315

 Score = 40.4 bits (93), Expect = 0.085,   Method: Compositional matrix adjust.
 Identities = 24/87 (27%), Positives = 47/87 (54%), Gaps = 2/87 (2%)

Query: 68  WFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVII 127
           ++  ++  + ++   +D LIS  L  +   ++LD +  +IL  G  EL     +P +V++
Sbjct: 67  YYHEMMRDIPEQIDALDALISQHLDRE--INKLDTVEHAILLVGAYELQNRLEIPYKVVL 124

Query: 128 SEYVCIAHDFFYGDEPKFINAVLDKVS 154
            E + + + F   D  K INAVLD+++
Sbjct: 125 DEAMKLNNHFGATDAHKLINAVLDRMA 151


>gi|241662317|ref|YP_002980677.1| transcription antitermination protein NusB [Ralstonia pickettii
           12D]
 gi|240864344|gb|ACS62005.1| NusB antitermination factor [Ralstonia pickettii 12D]
          Length = 155

 Score = 40.4 bits (93), Expect = 0.086,   Method: Compositional matrix adjust.
 Identities = 38/156 (24%), Positives = 67/156 (42%), Gaps = 20/156 (12%)

Query: 4   QDN-----KKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVE 58
           QDN     K   K + RR  AR  A+Q LYQ  ++  +   ++          +  L   
Sbjct: 3   QDNSQAKTKAPAKSARRR--ARELALQGLYQW-LLNRNDPGVV----------EAHLQDA 49

Query: 59  SVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIEC 118
             +   D   F  ++HG +  +  +    +  L      + L  +  + L  G  EL+ C
Sbjct: 50  QGFNKADRAHFDALLHGAIREETTLTEAFTPYLDR--PVAELSPVERAALLVGAYELVHC 107

Query: 119 HSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVS 154
             +P +V+I+E V +   F   +  K++N VLDK++
Sbjct: 108 VDIPYKVVINEAVELTKTFGGVEGYKYVNGVLDKLA 143


>gi|291519195|emb|CBK74416.1| transcription antitermination factor NusB [Butyrivibrio
           fibrisolvens 16/4]
          Length = 140

 Score = 40.4 bits (93), Expect = 0.086,   Method: Compositional matrix adjust.
 Identities = 27/114 (23%), Positives = 56/114 (49%), Gaps = 2/114 (1%)

Query: 40  IISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSR 99
           +I  +   R  A+TE   ++     D E+ +     ++ +   ID +I+  + + W  +R
Sbjct: 28  VIDTFLQGRNNAETEDLAKNNKTPEDEEYIKTKSEAIIAKLPEIDEMINKSV-DGWKTTR 86

Query: 100 LDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKV 153
           +  +  +++R  + E I+  ++PV V I+E V +A +F       F+N  L K+
Sbjct: 87  MAKVDLTLIRLALYE-IKFENIPVGVAINEAVTLADEFGTDSSAGFVNGALAKL 139


>gi|317133047|ref|YP_004092361.1| sun protein [Ethanoligenens harbinense YUAN-3]
 gi|315471026|gb|ADU27630.1| sun protein [Ethanoligenens harbinense YUAN-3]
          Length = 436

 Score = 40.4 bits (93), Expect = 0.089,   Method: Compositional matrix adjust.
 Identities = 26/105 (24%), Positives = 48/105 (45%), Gaps = 3/105 (2%)

Query: 52  DTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAG 111
           D EL+ ++     D      +++GV+ R+  +D L+ +         ++  +L +ILR G
Sbjct: 27  DAELE-KAALSRRDAALATALVYGVVARRITLDYLLETA--SGRPVQKMQPVLRAILRLG 83

Query: 112 VLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRK 156
             +L     +P    ++E V +A     G    F+N VL  + RK
Sbjct: 84  AYQLCYLDKIPARAAVNEAVQLAKKRHLGHASGFVNGVLRGLDRK 128


>gi|195953014|ref|YP_002121304.1| NusB antitermination factor [Hydrogenobaculum sp. Y04AAS1]
 gi|195932626|gb|ACG57326.1| NusB antitermination factor [Hydrogenobaculum sp. Y04AAS1]
          Length = 139

 Score = 40.4 bits (93), Expect = 0.089,   Method: Compositional matrix adjust.
 Identities = 25/75 (33%), Positives = 38/75 (50%), Gaps = 1/75 (1%)

Query: 81  QHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYG 140
           ++ID  I+S L E W+   L  I  +ILR    EL+          I +Y+ IA ++   
Sbjct: 61  ENIDKKIASYL-ENWNLDDLGSIEKAILRTAFTELLYIKPKKNIQAIIDYIEIASNYGNK 119

Query: 141 DEPKFINAVLDKVSR 155
             P FIN +L K+S+
Sbjct: 120 KTPSFINGILSKLSK 134


>gi|224369793|ref|YP_002603957.1| RsmB [Desulfobacterium autotrophicum HRM2]
 gi|223692510|gb|ACN15793.1| RsmB [Desulfobacterium autotrophicum HRM2]
          Length = 455

 Score = 40.4 bits (93), Expect = 0.090,   Method: Compositional matrix adjust.
 Identities = 32/121 (26%), Positives = 54/121 (44%), Gaps = 6/121 (4%)

Query: 40  IISEYETYRFCADTELDVESVYL----HVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKW 95
           I+ E E+ +F  D  L+  S  L    H D      II+G +  K+H+D LI+     K 
Sbjct: 23  ILIENESSKFTLDKILERYSAQLESLAHRDRALANAIIYGTLRWKEHLDWLITPF--SKR 80

Query: 96  SFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSR 155
              +++  +C  LR  + + +    +PV   ++  V  A          F+NAVL K + 
Sbjct: 81  PLDQIEPAICYTLRTALYQTVFMDKIPVSAAVNTAVNAAKKLSNTGAAGFVNAVLRKATT 140

Query: 156 K 156
           +
Sbjct: 141 R 141


>gi|116492583|ref|YP_804318.1| NusB antitermination factor [Pediococcus pentosaceus ATCC 25745]
 gi|122265953|sp|Q03FZ6|NUSB_PEDPA RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|116102733|gb|ABJ67876.1| NusB antitermination factor [Pediococcus pentosaceus ATCC 25745]
          Length = 133

 Score = 40.4 bits (93), Expect = 0.090,   Method: Compositional matrix adjust.
 Identities = 26/89 (29%), Positives = 46/89 (51%), Gaps = 1/89 (1%)

Query: 67  EWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVI 126
           ++ + ++ GV    + I+  IS  L + W+  RL+     IL+ G  E I+    P +V 
Sbjct: 46  QFLKDLVMGVSLNLEAINETISGELKKGWTVKRLESPDRVILQMGTYE-IKYTETPDKVA 104

Query: 127 ISEYVCIAHDFFYGDEPKFINAVLDKVSR 155
           I+E + +A  +   D  KFIN VL  +++
Sbjct: 105 INEALELAKKYTDEDARKFINGVLSNIAK 133


>gi|253572755|ref|ZP_04850155.1| conserved hypothetical protein [Bacteroides sp. 1_1_6]
 gi|298384353|ref|ZP_06993913.1| NusB family protein [Bacteroides sp. 1_1_14]
 gi|251837655|gb|EES65746.1| conserved hypothetical protein [Bacteroides sp. 1_1_6]
 gi|298262632|gb|EFI05496.1| NusB family protein [Bacteroides sp. 1_1_14]
          Length = 308

 Score = 40.4 bits (93), Expect = 0.091,   Method: Compositional matrix adjust.
 Identities = 20/75 (26%), Positives = 39/75 (52%), Gaps = 2/75 (2%)

Query: 92  TEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLD 151
           T+ W   R+  +   I++  + E++   ++PV V ++EYV IA  +       FIN  LD
Sbjct: 234 TKNWDLDRIAFMDIIIMQTALAEILSFPNIPVSVSLNEYVEIAKLYSTAKSGSFINGTLD 293

Query: 152 KVSRKEEIKRSGCVS 166
            +    ++K+ G ++
Sbjct: 294 GIVN--QLKKEGKLT 306


>gi|87123339|ref|ZP_01079190.1| Antitermination protein NusB [Synechococcus sp. RS9917]
 gi|86169059|gb|EAQ70315.1| Antitermination protein NusB [Synechococcus sp. RS9917]
          Length = 219

 Score = 40.4 bits (93), Expect = 0.092,   Method: Compositional matrix adjust.
 Identities = 25/80 (31%), Positives = 41/80 (51%), Gaps = 2/80 (2%)

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
           V++++  ID  +   + E W  SRL  I   ILR  V++L   H+ P  V  +E V +AH
Sbjct: 134 VLEQRSAIDARLDGVM-EGWRLSRLPRIDRDILRLAVVDLTALHT-PAAVACNEAVELAH 191

Query: 136 DFFYGDEPKFINAVLDKVSR 155
            +      + IN VL ++ +
Sbjct: 192 RYSDDQGRRMINGVLRRLQQ 211


>gi|261749509|ref|YP_003257195.1| antitermination protein NusB [Blattabacterium sp. (Periplaneta
           americana) str. BPLAN]
 gi|261497602|gb|ACX84052.1| antitermination protein NusB [Blattabacterium sp. (Periplaneta
           americana) str. BPLAN]
          Length = 312

 Score = 40.4 bits (93), Expect = 0.093,   Method: Compositional matrix adjust.
 Identities = 31/130 (23%), Positives = 63/130 (48%), Gaps = 8/130 (6%)

Query: 27  LYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH-GVMDRKQHIDL 85
           LY   ++ C T + I      +        + +VY + + + F V ++   +  K+  + 
Sbjct: 174 LYIAHMMVCKTLQFI------QLSTPKNFKLYNVYRNDENKKFIVSLYRNTIFHKREFNE 227

Query: 86  LISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKF 145
           LIS+ ++  W+  R+ +I   IL+  + E +   ++P +  ++EY+ IA  F       F
Sbjct: 228 LISN-ISNNWNIERIAIIDLIILQMAICEFLYFPNIPPKATMNEYIEIAKIFCMDKSKTF 286

Query: 146 INAVLDKVSR 155
           IN +LD+V +
Sbjct: 287 INGILDQVFK 296


>gi|255692806|ref|ZP_05416481.1| NusB family protein [Bacteroides finegoldii DSM 17565]
 gi|260621435|gb|EEX44306.1| NusB family protein [Bacteroides finegoldii DSM 17565]
          Length = 308

 Score = 40.4 bits (93), Expect = 0.093,   Method: Compositional matrix adjust.
 Identities = 20/75 (26%), Positives = 39/75 (52%), Gaps = 2/75 (2%)

Query: 92  TEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLD 151
           T+ W   R+  +   I++  + E++   ++PV V ++EYV IA  +       FIN  LD
Sbjct: 234 TKNWDLDRIAFMDIIIMQTALAEILSFPNIPVSVSLNEYVEIAKLYSTSKSGSFINGTLD 293

Query: 152 KVSRKEEIKRSGCVS 166
            +    ++K+ G ++
Sbjct: 294 GIVN--QLKKEGKLT 306


>gi|83746193|ref|ZP_00943247.1| N utilization substance protein B [Ralstonia solanacearum UW551]
 gi|207728164|ref|YP_002256558.1| n utilization substance protein b [Ralstonia solanacearum MolK2]
 gi|207744100|ref|YP_002260492.1| n utilization substance protein b homolog (protein nusb) [Ralstonia
           solanacearum IPO1609]
 gi|300704874|ref|YP_003746477.1| antitermination factor [Ralstonia solanacearum CFBP2957]
 gi|83727159|gb|EAP74283.1| N utilization substance protein B [Ralstonia solanacearum UW551]
 gi|206591409|emb|CAQ57021.1| n utilization substance protein b homolog (protein nusb) [Ralstonia
           solanacearum MolK2]
 gi|206595504|emb|CAQ62431.1| n utilization substance protein b homolog (protein nusb) [Ralstonia
           solanacearum IPO1609]
 gi|299072538|emb|CBJ43888.1| antitermination factor (N utilization substance B) (transcriptional
           antiterminator) [Ralstonia solanacearum CFBP2957]
          Length = 155

 Score = 40.4 bits (93), Expect = 0.094,   Method: Compositional matrix adjust.
 Identities = 41/162 (25%), Positives = 71/162 (43%), Gaps = 32/162 (19%)

Query: 4   QDN-----KKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVE 58
           QDN     K   K + RR  AR  A+Q LYQ  ++  +   ++          +  L   
Sbjct: 3   QDNSPAKPKAAPKSARRR--ARELALQGLYQW-LLNRNDPGVV----------EAHLHDA 49

Query: 59  SVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWS------FSRLDMILCSILRAGV 112
             +   D   F  ++HG +  +        + LTE ++       + L  +  + L  G 
Sbjct: 50  QGFNKADRAHFDALLHGAIREE--------ATLTESFTPFLDRPVAELSPVERAALLVGA 101

Query: 113 LELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVS 154
            EL+ C  +P +V+I+E V +A  F   +  K++N VLDK++
Sbjct: 102 YELVHCIDIPYKVVINEAVELAKTFGGVEGYKYVNGVLDKLA 143


>gi|119357565|ref|YP_912209.1| sun protein [Chlorobium phaeobacteroides DSM 266]
 gi|119354914|gb|ABL65785.1| sun protein [Chlorobium phaeobacteroides DSM 266]
          Length = 444

 Score = 40.4 bits (93), Expect = 0.094,   Method: Compositional matrix adjust.
 Identities = 24/83 (28%), Positives = 44/83 (53%), Gaps = 2/83 (2%)

Query: 72  IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
           +++GV+  ++ ID +IS     +  F +   +L +ILR GV +L+    +P    +SE V
Sbjct: 45  LVNGVLRMRKKIDFIISKFYHHR--FEKAAPVLQNILRLGVYQLLFLEKIPEWAAVSECV 102

Query: 132 CIAHDFFYGDEPKFINAVLDKVS 154
            +A  +      K +N VL K++
Sbjct: 103 DLARKYKGERMAKLVNGVLRKIT 125


>gi|291558612|emb|CBL37412.1| transcription antitermination factor NusB [butyrate-producing
           bacterium SSC/2]
          Length = 137

 Score = 40.4 bits (93), Expect = 0.095,   Method: Compositional matrix adjust.
 Identities = 23/67 (34%), Positives = 32/67 (47%)

Query: 89  SCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINA 148
           S  T  W+  RL     SILR    E++    VP +V I+E V +A  +       FIN 
Sbjct: 66  SAHTNAWNLERLGKAELSILRLATYEILLDEQVPRKVAINEAVELAKKYCNEKAAPFING 125

Query: 149 VLDKVSR 155
           VL K+ +
Sbjct: 126 VLSKIGQ 132


>gi|29349999|ref|NP_813502.1| putative nitrogen utilization substance protein [Bacteroides
           thetaiotaomicron VPI-5482]
 gi|29341910|gb|AAO79696.1| putative nitrogen utilization substance protein [Bacteroides
           thetaiotaomicron VPI-5482]
          Length = 260

 Score = 40.0 bits (92), Expect = 0.097,   Method: Compositional matrix adjust.
 Identities = 20/75 (26%), Positives = 39/75 (52%), Gaps = 2/75 (2%)

Query: 92  TEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLD 151
           T+ W   R+  +   I++  + E++   ++PV V ++EYV IA  +       FIN  LD
Sbjct: 186 TKNWDLDRIAFMDIIIMQTALAEILSFPNIPVSVSLNEYVEIAKLYSTAKSGSFINGTLD 245

Query: 152 KVSRKEEIKRSGCVS 166
            +    ++K+ G ++
Sbjct: 246 GIVN--QLKKEGKLT 258


>gi|153807762|ref|ZP_01960430.1| hypothetical protein BACCAC_02045 [Bacteroides caccae ATCC 43185]
 gi|149129371|gb|EDM20585.1| hypothetical protein BACCAC_02045 [Bacteroides caccae ATCC 43185]
          Length = 308

 Score = 40.0 bits (92), Expect = 0.098,   Method: Compositional matrix adjust.
 Identities = 20/75 (26%), Positives = 39/75 (52%), Gaps = 2/75 (2%)

Query: 92  TEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLD 151
           T+ W   R+  +   I++  + E++   ++PV V ++EYV IA  +       FIN  LD
Sbjct: 234 TKNWELDRIAFMDVIIMQTALAEILSFPNIPVSVSLNEYVEIAKLYSTSKSGSFINGTLD 293

Query: 152 KVSRKEEIKRSGCVS 166
            +    ++K+ G ++
Sbjct: 294 GIVN--QLKKEGKLT 306


>gi|303228824|ref|ZP_07315638.1| transcription antitermination factor NusB [Veillonella atypica
           ACS-134-V-Col7a]
 gi|303232103|ref|ZP_07318806.1| transcription antitermination factor NusB [Veillonella atypica
           ACS-049-V-Sch6]
 gi|302513209|gb|EFL55248.1| transcription antitermination factor NusB [Veillonella atypica
           ACS-049-V-Sch6]
 gi|302516536|gb|EFL58464.1| transcription antitermination factor NusB [Veillonella atypica
           ACS-134-V-Col7a]
          Length = 134

 Score = 40.0 bits (92), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 28/99 (28%), Positives = 50/99 (50%), Gaps = 2/99 (2%)

Query: 60  VYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLEL-IEC 118
           + L +D+ +   II GV+   + ID ++    T++  F  +D +  +ILR  + EL    
Sbjct: 37  ISLSMDIAYANQIIDGVLSHLEEIDTILEPYCTKR-KFVLMDKVDRAILRLAIWELNYNS 95

Query: 119 HSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKE 157
             V   ++I+E V +A  F      K INA+LD  ++ +
Sbjct: 96  EEVSPSIVINEAVQLAKSFGSDASYKLINAILDAYNKSK 134


>gi|302823170|ref|XP_002993239.1| hypothetical protein SELMODRAFT_136794 [Selaginella moellendorffii]
 gi|300138909|gb|EFJ05660.1| hypothetical protein SELMODRAFT_136794 [Selaginella moellendorffii]
          Length = 476

 Score = 40.0 bits (92), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 25/87 (28%), Positives = 48/87 (55%), Gaps = 2/87 (2%)

Query: 73  IHGVMDRKQHIDLLISSCL-TEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
           + G++  K+++D +IS+    ++  F R++ IL  +LR G  EL++   VP   +++E V
Sbjct: 68  VAGIVRWKKYLDYVISNVYDKDQNEFERMEPILKQVLRLGSYELLKLE-VPAYAVVNEAV 126

Query: 132 CIAHDFFYGDEPKFINAVLDKVSRKEE 158
            +A+        K  NA+L  V+  +E
Sbjct: 127 KLANAASRAGAGKLANALLRAVASHKE 153


>gi|310779261|ref|YP_003967594.1| NusB antitermination factor [Ilyobacter polytropus DSM 2926]
 gi|309748584|gb|ADO83246.1| NusB antitermination factor [Ilyobacter polytropus DSM 2926]
          Length = 132

 Score = 40.0 bits (92), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 28/92 (30%), Positives = 47/92 (51%), Gaps = 6/92 (6%)

Query: 67  EWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVI 126
           E+     +GV + K  I   I   +T  W+  R+  +  ++L+    EL++   V  E++
Sbjct: 45  EFLERYANGVTENKAEIQRTIDENMT-GWTLDRIGNVERTLLKFATYELLK-EDVGYEIV 102

Query: 127 ISEYVCIAHDFFYGDEP--KFINAVLDKVSRK 156
           I+E V +A    YG+E   +FIN VL K+  K
Sbjct: 103 INEIVELAKK--YGEEKSHEFINGVLAKIVNK 132


>gi|299140507|ref|ZP_07033645.1| NusB family protein [Prevotella oris C735]
 gi|298577473|gb|EFI49341.1| NusB family protein [Prevotella oris C735]
          Length = 321

 Score = 40.0 bits (92), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 18/66 (27%), Positives = 35/66 (53%)

Query: 89  SCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINA 148
           S  +  W F RL  +   I++  + E++   ++P+ V I+EYV +A  +       +IN 
Sbjct: 230 SEASRNWDFGRLAYMDVVIMQIAIAEMLTFPNIPISVTINEYVDLAKLYSTPKSGGYING 289

Query: 149 VLDKVS 154
           +LD ++
Sbjct: 290 MLDSIA 295


>gi|281423250|ref|ZP_06254163.1| NusB family protein [Prevotella oris F0302]
 gi|281402586|gb|EFB33417.1| NusB family protein [Prevotella oris F0302]
          Length = 319

 Score = 40.0 bits (92), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 18/66 (27%), Positives = 35/66 (53%)

Query: 89  SCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINA 148
           S  +  W F RL  +   I++  + E++   ++P+ V I+EYV +A  +       +IN 
Sbjct: 230 SEASRNWDFGRLAYMDVVIMQIAIAEMLTFPNIPISVTINEYVDLAKLYSTQKSGGYING 289

Query: 149 VLDKVS 154
           +LD ++
Sbjct: 290 MLDSIA 295


>gi|319941815|ref|ZP_08016137.1| hypothetical protein HMPREF9464_01356 [Sutterella wadsworthensis
           3_1_45B]
 gi|319804748|gb|EFW01615.1| hypothetical protein HMPREF9464_01356 [Sutterella wadsworthensis
           3_1_45B]
          Length = 173

 Score = 40.0 bits (92), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 25/92 (27%), Positives = 45/92 (48%), Gaps = 4/92 (4%)

Query: 65  DLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVE 124
           D E    ++ G +     ++   SS +       R+ ++  +IL  G  EL+ C   P  
Sbjct: 71  DRELLTTLLSGAIGEHAALEAEFSSFVDR--DLKRVSLVERAILFIGTYELLRCPQTPYR 128

Query: 125 VIISEYVCIAHDFFYGDEPKFINAVLDKVSRK 156
           V+++E + +A  F  G   +F NAVL++V+ K
Sbjct: 129 VVLNETIELAKHF--GSGYRFTNAVLERVAAK 158


>gi|183602591|ref|ZP_02963956.1| NusB antitermination protein [Bifidobacterium animalis subsp.
           lactis HN019]
 gi|219683633|ref|YP_002470016.1| transcription antitermination factor NusB [Bifidobacterium animalis
           subsp. lactis AD011]
 gi|241190665|ref|YP_002968059.1| transcription termination factor [Bifidobacterium animalis subsp.
           lactis Bl-04]
 gi|241196071|ref|YP_002969626.1| transcription termination factor [Bifidobacterium animalis subsp.
           lactis DSM 10140]
 gi|254772615|sp|B8DTW1|NUSB_BIFA0 RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|183218232|gb|EDT88878.1| NusB antitermination protein [Bifidobacterium animalis subsp.
           lactis HN019]
 gi|219621283|gb|ACL29440.1| transcription antitermination factor NusB [Bifidobacterium animalis
           subsp. lactis AD011]
 gi|240249057|gb|ACS45997.1| Transcription termination factor [Bifidobacterium animalis subsp.
           lactis Bl-04]
 gi|240250625|gb|ACS47564.1| Transcription termination factor [Bifidobacterium animalis subsp.
           lactis DSM 10140]
 gi|289178403|gb|ADC85649.1| N utilization substance protein B [Bifidobacterium animalis subsp.
           lactis BB-12]
 gi|295793654|gb|ADG33189.1| Transcription termination factor [Bifidobacterium animalis subsp.
           lactis V9]
          Length = 154

 Score = 40.0 bits (92), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 36/135 (26%), Positives = 58/135 (42%), Gaps = 12/135 (8%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           R  AR  A+  LY+ D  G     ++ E    +  A T L           E+   I+ G
Sbjct: 3   RSTARRRALNTLYEADEKGQDFLSLLDE-RIAQPGAQTPL----------PEYAIEIVRG 51

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
           V + ++ ID  +++  T  W   R+  I  +ILR    E++    VP +V I E + ++ 
Sbjct: 52  VDEHRRDIDSQLNTHST-GWKVKRMHAIDRNILRIATWEILYNDDVPDKVAIDEALNLSK 110

Query: 136 DFFYGDEPKFINAVL 150
                  P FI+ VL
Sbjct: 111 TLSDDAAPSFIHGVL 125


>gi|332668432|ref|YP_004451220.1| NusB antitermination factor [Haliscomenobacter hydrossis DSM 1100]
 gi|332337246|gb|AEE54347.1| NusB antitermination factor [Haliscomenobacter hydrossis DSM 1100]
          Length = 312

 Score = 40.0 bits (92), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 17/59 (28%), Positives = 35/59 (59%)

Query: 95  WSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKV 153
           W   R+ +I   +++  ++EL+   S+P +V ++E+V IA ++       FIN +LD++
Sbjct: 234 WDVERVAIIDMILIKMALVELMTFKSIPSKVTLNEFVEIAKNYSTDKSKDFINGILDRL 292


>gi|313157987|gb|EFR57393.1| conserved hypothetical protein [Alistipes sp. HGB5]
          Length = 311

 Score = 40.0 bits (92), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 23/77 (29%), Positives = 38/77 (49%), Gaps = 4/77 (5%)

Query: 91  LTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVL 150
            T  W   R+  +   I+   + EL    S+PV+V + EY+ I+  +       FIN VL
Sbjct: 231 FTSNWDVERIVFMDNLIIGTAMAELTSFPSIPVKVTLDEYIEISKYYSTPGSSTFINGVL 290

Query: 151 DKV----SRKEEIKRSG 163
           DK+    + +  IK++G
Sbjct: 291 DKIVDSLTAEGRIKKAG 307


>gi|149370659|ref|ZP_01890348.1| putative N utilization substance protein [unidentified eubacterium
           SCB49]
 gi|149356210|gb|EDM44767.1| putative N utilization substance protein [unidentified eubacterium
           SCB49]
          Length = 339

 Score = 40.0 bits (92), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 19/62 (30%), Positives = 32/62 (51%)

Query: 92  TEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLD 151
           T  W   R+  I   I++ G+ E +   S+P    I+EY+ I+ ++       FIN +LD
Sbjct: 260 TPNWDQDRIADIDLIIIKMGIAEFLYFPSIPTRATINEYLEISKEYSTPKSSIFINGILD 319

Query: 152 KV 153
           K+
Sbjct: 320 KI 321


>gi|293363740|ref|ZP_06610483.1| transcription antitermination factor NusB [Mycoplasma alligatoris
           A21JP2]
 gi|292552705|gb|EFF41472.1| transcription antitermination factor NusB [Mycoplasma alligatoris
           A21JP2]
          Length = 150

 Score = 40.0 bits (92), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 25/89 (28%), Positives = 44/89 (49%), Gaps = 8/89 (8%)

Query: 72  IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
            + G+      I  +I+S L   W++ R+   + ++L     EL    ++P +++I+E V
Sbjct: 47  FLEGIEKNYVFIKKIINSFLNTDWTWHRIPPFIRAVLINATAELF---AIPPKIVINEAV 103

Query: 132 CIAHDFFYGDEP-----KFINAVLDKVSR 155
            I  DFF   E      KF+NA+L  V +
Sbjct: 104 EITKDFFCMTEKDQKFYKFVNAILQNVYK 132


>gi|315651135|ref|ZP_07904167.1| rRNA (cytosine-5-)-methyltransferase [Eubacterium saburreum DSM
           3986]
 gi|315486600|gb|EFU76950.1| rRNA (cytosine-5-)-methyltransferase [Eubacterium saburreum DSM
           3986]
          Length = 444

 Score = 40.0 bits (92), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 34/139 (24%), Positives = 63/139 (45%), Gaps = 14/139 (10%)

Query: 20  RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79
           R   ++AL  ID+ G  + ++I          D  L+  S     D  +F  ++HGV++ 
Sbjct: 7   RTLILEALMLIDVEGEYSHKVI----------DMALEKYSYLSKADRGFFSKVVHGVVEY 56

Query: 80  KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139
           +  +D +I      K    R+  ++  ILR  + +++    VP   II+E V +      
Sbjct: 57  RLQLDFIIKKYNGGK----RIKPVIREILRMAIYQILYMDRVPDRAIINEAVNLVKLRRL 112

Query: 140 GDEPKFINAVLDKVSRKEE 158
                F+N +L K+S ++E
Sbjct: 113 TALTGFVNGILRKISSEKE 131


>gi|313897409|ref|ZP_07830952.1| transcription antitermination factor NusB [Clostridium sp. HGF2]
 gi|312957779|gb|EFR39404.1| transcription antitermination factor NusB [Clostridium sp. HGF2]
          Length = 125

 Score = 40.0 bits (92), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 25/90 (27%), Positives = 47/90 (52%), Gaps = 2/90 (2%)

Query: 64  VDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPV 123
           +D   + V I  +  +  +ID  I++ L + W+F+RL  +  +IL     EL +  + P 
Sbjct: 38  IDPFLYTVTIDAIRYQDVYIDK-INAALRQDWTFARLGFVEQAILMMAACEL-DLETAPK 95

Query: 124 EVIISEYVCIAHDFFYGDEPKFINAVLDKV 153
            ++I E V +A  +   +  + IN VLD++
Sbjct: 96  AIVIDEAVTLAKKYCDDETYRLINGVLDRL 125


>gi|326390202|ref|ZP_08211763.1| NusB antitermination factor [Thermoanaerobacter ethanolicus JW 200]
 gi|325993850|gb|EGD52281.1| NusB antitermination factor [Thermoanaerobacter ethanolicus JW 200]
          Length = 140

 Score = 40.0 bits (92), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 36/141 (25%), Positives = 62/141 (43%), Gaps = 14/141 (9%)

Query: 15  RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74
            R  AR   V+ LYQ D+     ++I   +  Y+     E            E+    + 
Sbjct: 2   NRTEAREWIVKMLYQYDVSRLPISKIFENF--YKENDPGE----------QKEYIENTVI 49

Query: 75  GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134
           G ++  + ID  I    ++ W+ +R+  I  +ILR  + E+ +  ++PV + I+E V IA
Sbjct: 50  GAIEHLEEIDKEIER-YSQNWALNRMPKIDLAILRCSIYEM-QYGNIPVNISINEAVEIA 107

Query: 135 HDFFYGDEPKFINAVLDKVSR 155
             +   D   FIN +L    R
Sbjct: 108 KKYSTEDSHVFINGLLGAFVR 128


>gi|332653013|ref|ZP_08418758.1| transcription antitermination factor NusB [Ruminococcaceae
           bacterium D16]
 gi|332518159|gb|EGJ47762.1| transcription antitermination factor NusB [Ruminococcaceae
           bacterium D16]
          Length = 164

 Score = 40.0 bits (92), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 38/148 (25%), Positives = 62/148 (41%), Gaps = 10/148 (6%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEII-SEYETYRFCADTELDVES-VYLHVDLE----WF 69
           R  AR  AV  ++ +     S  E++ SE    RF    EL  ES +Y     E    + 
Sbjct: 3   RSTAREIAVHLIFSLGFGTQSAEEVLDSELTRERF---EELGGESQLYAQFPNEKQERYI 59

Query: 70  RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISE 129
           R ++ GV      +D  I+      WSF+R+  +  +ILR  + E++    +P    I  
Sbjct: 60  RDLVRGVFAHGPELDDYIARYAV-GWSFARIPRMAAAILRTAMYEVLYMPDIPNAAAIDA 118

Query: 130 YVCIAHDFFYGDEPKFINAVLDKVSRKE 157
            V +   +   +   F+N +L    R E
Sbjct: 119 AVEMTKKYEPQEVAAFVNGILGTFVRTE 146


>gi|113954607|ref|YP_729249.1| transcription antitermination protein NusB [Synechococcus sp.
           CC9311]
 gi|113881958|gb|ABI46916.1| putative transcription antitermination factor NusB [Synechococcus
           sp. CC9311]
          Length = 210

 Score = 40.0 bits (92), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 26/78 (33%), Positives = 41/78 (52%), Gaps = 2/78 (2%)

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
           V+ +++ ID ++   + E W  +RL  I   ILR  V++L E  + P  V  +E V +AH
Sbjct: 126 VLKKRKAIDQMLDGVM-EGWRLTRLPRIDRDILRLAVIDLSELKT-PAAVACNEAVELAH 183

Query: 136 DFFYGDEPKFINAVLDKV 153
            F      K IN VL ++
Sbjct: 184 RFSDEQGRKMINGVLRRL 201


>gi|294788786|ref|ZP_06754027.1| transcription antitermination factor NusB [Simonsiella muelleri
           ATCC 29453]
 gi|294483268|gb|EFG30954.1| transcription antitermination factor NusB [Simonsiella muelleri
           ATCC 29453]
          Length = 156

 Score = 40.0 bits (92), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 39/148 (26%), Positives = 61/148 (41%), Gaps = 14/148 (9%)

Query: 7   KKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDL 66
           +K L  S RR  AR   VQALYQ  +      EI +    +           + +   D 
Sbjct: 3   EKKLHKSPRRR-AREFVVQALYQAALNQKPAPEIANFLREH-----------TDFKRADA 50

Query: 67  EWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVI 126
           E F  +  G    ++   +LI   L        ++ I  +IL     EL      P  V+
Sbjct: 51  ELFDALFFGTNANQRAYMMLIRPHLDRDEKL--INPIERAILLMATHELKTMPETPHAVV 108

Query: 127 ISEYVCIAHDFFYGDEPKFINAVLDKVS 154
           I+E + +   F   D  KF+N++LDK++
Sbjct: 109 INEAIEVTKTFGGTDSHKFVNSILDKLA 136


>gi|260654155|ref|ZP_05859645.1| transcription antitermination factor NusB [Jonquetella anthropi
           E3_33 E1]
 gi|260631140|gb|EEX49334.1| transcription antitermination factor NusB [Jonquetella anthropi
           E3_33 E1]
          Length = 165

 Score = 40.0 bits (92), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 46/159 (28%), Positives = 69/159 (43%), Gaps = 20/159 (12%)

Query: 13  SHRRGIARLAAVQALYQIDIIG--CSTTEIISE-YETYRFCADT-ELDVESVYL------ 62
           S ++ + R  AVQAL+ +D       T  ++++ +E   F  D  E+D E+         
Sbjct: 11  SQKQHLRRFLAVQALFALDSSADPAGTLRLLADDWELLGFHGDELEIDDETASQLPAISA 70

Query: 63  ---HVDLEWF-RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIEC 118
                 ++W  RV  H  +D    +D LI+ CL   W   RLD +  +ILR    E    
Sbjct: 71  EDCGAAVQWAERVWSH--LD---QVDSLIAPCL-RGWRLPRLDGVDRAILRLCFFESRVE 124

Query: 119 HSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKE 157
            SV   V  SE V +A         KF+N V+  + R E
Sbjct: 125 GSVNDAVAASEAVILAKAMGGEQSAKFVNGVIGSIMRGE 163


>gi|300692261|ref|YP_003753256.1| antitermination factor (N utilization substance B) (transcriptional
           antiterminator) [Ralstonia solanacearum PSI07]
 gi|299079321|emb|CBJ51993.1| antitermination factor (N utilization substance B) (transcriptional
           antiterminator) [Ralstonia solanacearum PSI07]
          Length = 155

 Score = 40.0 bits (92), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 38/154 (24%), Positives = 68/154 (44%), Gaps = 27/154 (17%)

Query: 7   KKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDL 66
           K   K + RR  AR  A+Q LYQ  ++  +   ++          +  L     +   D 
Sbjct: 11  KAPPKSARRR--ARELALQGLYQW-LLNRNDPGVV----------EAHLHDAQGFNKADR 57

Query: 67  EWFRVIIHGVMDRKQHIDLLISSCLTEKWS------FSRLDMILCSILRAGVLELIECHS 120
             F  ++HG +  +        + LTE ++       + L  +  + L  G  EL+ C  
Sbjct: 58  AHFDALLHGAIREE--------ATLTESFTPFLDRPVAELSPVERAALLVGAYELVHCVD 109

Query: 121 VPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVS 154
           +P +V+I+E V +A  F   +  K++N VLDK++
Sbjct: 110 IPYKVVINEAVELAKTFGGVEGYKYVNGVLDKLA 143


>gi|253995875|ref|YP_003047939.1| NusB antitermination factor [Methylotenera mobilis JLW8]
 gi|253982554|gb|ACT47412.1| NusB antitermination factor [Methylotenera mobilis JLW8]
          Length = 178

 Score = 40.0 bits (92), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 32/103 (31%), Positives = 49/103 (47%), Gaps = 5/103 (4%)

Query: 61  YLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHS 120
           Y   D  +F+ ++  V +    ID  I   +    +   L  +  +ILR    EL+   S
Sbjct: 74  YNKADEAYFKHLLQAVTENLTAIDGKIVGFIDR--TLEELSPVEHAILRIAGCELMFDLS 131

Query: 121 VPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVS---RKEEIK 160
           +P  V+I+E V +A  F   D  K+IN VLDK +   R  E+K
Sbjct: 132 IPYRVVINEGVELAKVFGGTDGHKYINGVLDKFAADVRAAEVK 174


>gi|288941488|ref|YP_003443728.1| NusB antitermination factor [Allochromatium vinosum DSM 180]
 gi|288896860|gb|ADC62696.1| NusB antitermination factor [Allochromatium vinosum DSM 180]
          Length = 171

 Score = 40.0 bits (92), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 43/169 (25%), Positives = 77/169 (45%), Gaps = 18/169 (10%)

Query: 1   MTIQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEI----ISEYETYRFCA----- 51
           MT  +N +   +S R    R AA+ ALYQ  + G     I    + + +     A     
Sbjct: 1   MTTPENPR--PISPRSQSRRYAAL-ALYQWRLTGDDPMAIKRHLLDDPKWLDAVAASLNG 57

Query: 52  ---DTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSIL 108
              + EL  E  + + ++E    +++GV      ID  +   L      S++D +  +IL
Sbjct: 58  VSDEDELAAEDRF-NFNVELLDELLNGVPTHIDAIDAQLDRFLDR--PISQVDPVELAIL 114

Query: 109 RAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKE 157
           R G  E++   ++P  V I+E V +       +  K++N VLDK++R++
Sbjct: 115 RLGAYEILFSDNIPDRVAINEAVELTKLLGAHEGHKYVNGVLDKIARRK 163


>gi|226226029|ref|YP_002760135.1| putative rRNA methyltransferase [Gemmatimonas aurantiaca T-27]
 gi|226089220|dbj|BAH37665.1| putative rRNA methyltransferase [Gemmatimonas aurantiaca T-27]
          Length = 428

 Score = 40.0 bits (92), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 27/95 (28%), Positives = 47/95 (49%), Gaps = 8/95 (8%)

Query: 65  DLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVE 124
           D  W + ++ GV+  ++ +D ++++ +  +   S LD  +  ILR G  +L+   SVP  
Sbjct: 22  DRRWVQELVWGVLRHRERLDAILATRI--RGGLSVLDDGVLDILRLGTYQLLSMDSVPPY 79

Query: 125 VIIS---EYVCIAHDFFYGDEPKFINAVLDKVSRK 156
             I    E V   H    G   K +NAVL ++ R+
Sbjct: 80  AAIGQSVEAVKRKHGIGAG---KLVNAVLRRIDRE 111


>gi|315637897|ref|ZP_07893084.1| transcription antitermination factor NusB [Campylobacter
           upsaliensis JV21]
 gi|315482009|gb|EFU72626.1| transcription antitermination factor NusB [Campylobacter
           upsaliensis JV21]
          Length = 132

 Score = 40.0 bits (92), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 37/143 (25%), Positives = 65/143 (45%), Gaps = 20/143 (13%)

Query: 16  RGIARLAAVQALYQIDIIGCST---TEIISEYETYRFCADTELDVESVYLHVDLEWFRVI 72
           R  AR + +  LY +++ G +    TE + E +      +  L   S+Y           
Sbjct: 4   RHQARQSVISLLYALELNGKNDNFITEFLQEKKIRNEAKNFTL---SLY----------- 49

Query: 73  IHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVC 132
            +GV++  Q +D  I   L E     ++  I  +ILR G  EL+   ++   ++I+E V 
Sbjct: 50  -NGVLEHLQSLDERIDVFLNEN-KIHQIGHIERAILRLGAFELLHTDTLAA-IVINEAVE 106

Query: 133 IAHDFFYGDEPKFINAVLDKVSR 155
           +A +    + PK IN VLD + +
Sbjct: 107 LAKEMANENAPKLINGVLDGLQK 129


>gi|295100829|emb|CBK98374.1| transcription antitermination factor NusB [Faecalibacterium
           prausnitzii L2-6]
          Length = 144

 Score = 39.7 bits (91), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 21/75 (28%), Positives = 42/75 (56%), Gaps = 1/75 (1%)

Query: 83  IDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDE 142
           +D LIS+ L   W+  RL  +  ++LR G+ E++        V+I+E V +   +   ++
Sbjct: 62  VDDLISAHLR-NWTMERLPRVSLTVLRLGLAEMLYGDEKKPGVVINEAVELTKKYGADED 120

Query: 143 PKFINAVLDKVSRKE 157
            +F+N +L  V+R++
Sbjct: 121 YQFVNGLLGTVAREQ 135


>gi|164688612|ref|ZP_02212640.1| hypothetical protein CLOBAR_02257 [Clostridium bartlettii DSM
           16795]
 gi|164603025|gb|EDQ96490.1| hypothetical protein CLOBAR_02257 [Clostridium bartlettii DSM
           16795]
          Length = 169

 Score = 39.7 bits (91), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 19/62 (30%), Positives = 35/62 (56%)

Query: 92  TEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLD 151
           T+ WS +R   I  +IL+  + E++   ++P +V I++ + +A  +     PKFIN +L 
Sbjct: 101 TKNWSINRFSKIDLAILQIAIAEMLSDLNIPEKVSINQAIDLAKIYCEEKTPKFINGILG 160

Query: 152 KV 153
            V
Sbjct: 161 SV 162


>gi|153855357|ref|ZP_01996506.1| hypothetical protein DORLON_02520 [Dorea longicatena DSM 13814]
 gi|149752177|gb|EDM62108.1| hypothetical protein DORLON_02520 [Dorea longicatena DSM 13814]
          Length = 436

 Score = 39.7 bits (91), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 24/84 (28%), Positives = 46/84 (54%), Gaps = 2/84 (2%)

Query: 72  IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
           +++G ++R   ID +I+  L  K   +++  ++ +ILR+ V ++    SVP   I +E V
Sbjct: 50  VVNGTLERMIEIDYIIN--LFSKVKVNKMKQLIRTILRSSVYQMKYMDSVPDSAICNEAV 107

Query: 132 CIAHDFFYGDEPKFINAVLDKVSR 155
            +A    + +   F+N VL  +SR
Sbjct: 108 KLAGKRGFVNLKGFVNGVLRNISR 131


>gi|261392944|emb|CAX50529.1| N utilization substance protein B (NusB protein) [Neisseria
           meningitidis 8013]
 gi|325127809|gb|EGC50717.1| transcription antitermination factor NusB [Neisseria meningitidis
           N1568]
          Length = 141

 Score = 39.7 bits (91), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 46/159 (28%), Positives = 65/159 (40%), Gaps = 26/159 (16%)

Query: 10  LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF 69
           +K + RR  +R  AVQA+YQ  I   +  EI    +  R  +D        +   D E F
Sbjct: 1   MKTARRR--SRELAVQAVYQSLINRTAAPEIA---KNIREMSD--------FAKADEELF 47

Query: 70  RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVL----ELIECHSVPVEV 125
             +  G           I   L       R +  L  I RA +L    EL      P  V
Sbjct: 48  NKLFFGTQTNAAEYIQQIRPLL------DRDEKDLNPIERAVLLTACHELSAMPETPYPV 101

Query: 126 IISEYVCIAHDFFYGDEPKFINAVLDKVS---RKEEIKR 161
           II+E + +   F   D  KF+N +LDK++   R +E KR
Sbjct: 102 IINEAIEVTKTFGGTDGHKFVNGILDKLAAQIRPDEPKR 140


>gi|240013567|ref|ZP_04720480.1| transcription antitermination protein NusB [Neisseria gonorrhoeae
           DGI18]
 gi|240016006|ref|ZP_04722546.1| transcription antitermination protein NusB [Neisseria gonorrhoeae
           FA6140]
 gi|240120636|ref|ZP_04733598.1| transcription antitermination protein NusB [Neisseria gonorrhoeae
           PID24-1]
          Length = 161

 Score = 39.7 bits (91), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 48/170 (28%), Positives = 72/170 (42%), Gaps = 29/170 (17%)

Query: 2   TIQDNK---KDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVE 58
           T+  N+   K +K + RR  +R  AVQA+YQ  I   +  EI    +  R  +D      
Sbjct: 10  TVPPNRFKEKIMKTTRRR--SRELAVQAVYQSLINRTAAPEIA---KNIREMSD------ 58

Query: 59  SVYLHVDLEWFRVIIHGVM----DRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLE 114
             +   D E F  +  G      D  Q I  L+     +      L+ I  ++L     E
Sbjct: 59  --FAKADEELFNKLFFGTQTNAADYIQKIRPLLDRDEKD------LNPIERAVLLTACHE 110

Query: 115 LIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVS---RKEEIKR 161
           L      P  VII+E + +   F   D  KF+N +LDK++   R +E KR
Sbjct: 111 LSAMPETPYPVIINEAIEVTKTFGGTDGHKFVNGILDKLAAQIRPDEPKR 160


>gi|301320813|gb|ADK69456.1| transcription antitermination factor NusB [Mycoplasma mycoides
           subsp. mycoides SC str. Gladysdale]
          Length = 132

 Score = 39.7 bits (91), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 28/79 (35%), Positives = 43/79 (54%), Gaps = 13/79 (16%)

Query: 81  QHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVC----IAHD 136
            HI++ ISS     W + R+  ++ +IL  G  E++  ++ P  V I+E V     I  D
Sbjct: 63  NHININISSS----WKWDRMPAVIRAILIVGTYEILYTNT-PKSVTINEMVKYVKEIEPD 117

Query: 137 FFYGDEPKFINAVLDKVSR 155
           F Y    KF+NAVLDK+ +
Sbjct: 118 FDY----KFVNAVLDKLVK 132


>gi|154173840|ref|YP_001407739.1| transcription antitermination protein NusB [Campylobacter curvus
           525.92]
 gi|166215674|sp|A7GWZ7|NUSB_CAMC5 RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|112803582|gb|EAU00926.1| transcription antitermination factor NusB [Campylobacter curvus
           525.92]
          Length = 131

 Score = 39.7 bits (91), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 25/73 (34%), Positives = 39/73 (53%), Gaps = 2/73 (2%)

Query: 79  RKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFF 138
           +K  +D ++   L EK    R+ ++  +ILR GV E+ +       VII+E + +A +  
Sbjct: 55  KKGELDEILKPYLKEK-DIERIGIVELAILRLGVYEM-KFTGTDKAVIINEAIELAKELG 112

Query: 139 YGDEPKFINAVLD 151
               PKFIN VLD
Sbjct: 113 GDSAPKFINGVLD 125


>gi|282895593|ref|ZP_06303727.1| NusB antitermination factor [Raphidiopsis brookii D9]
 gi|281199433|gb|EFA74297.1| NusB antitermination factor [Raphidiopsis brookii D9]
          Length = 213

 Score = 39.7 bits (91), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 27/91 (29%), Positives = 49/91 (53%), Gaps = 2/91 (2%)

Query: 68  WFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVII 127
           + + I+  V + +  +D +IS  L + W  +RL  I   IL+  V E+ +   VP  + I
Sbjct: 123 YAKEIVVTVDENRTILDQIISQALVD-WQVTRLAQIDRDILQIAVAEM-KFMEVPPSIAI 180

Query: 128 SEYVCIAHDFFYGDEPKFINAVLDKVSRKEE 158
           +E V +A  +   D  +FIN VL +V+ +++
Sbjct: 181 NEAVELAKRYSGDDGHRFINGVLRRVTEQKQ 211


>gi|312880056|ref|ZP_07739856.1| NusB antitermination factor [Aminomonas paucivorans DSM 12260]
 gi|310783347|gb|EFQ23745.1| NusB antitermination factor [Aminomonas paucivorans DSM 12260]
          Length = 156

 Score = 39.7 bits (91), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 29/86 (33%), Positives = 43/86 (50%), Gaps = 2/86 (2%)

Query: 76  VMDR-KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134
            +DR K  ID L+   L   W   R+  +  + +R  +LE +    VP+ V ISE V +A
Sbjct: 58  ALDRHKGAIDELLREQLV-GWRPERMVAVDRAAIRLALLEGVFEKLVPLAVAISEAVELA 116

Query: 135 HDFFYGDEPKFINAVLDKVSRKEEIK 160
             F   D  +F+N VL ++ R  E K
Sbjct: 117 KTFGTEDSGRFVNGVLGRIVRSLEPK 142


>gi|304316972|ref|YP_003852117.1| sun protein [Thermoanaerobacterium thermosaccharolyticum DSM 571]
 gi|302778474|gb|ADL69033.1| sun protein [Thermoanaerobacterium thermosaccharolyticum DSM 571]
          Length = 447

 Score = 39.7 bits (91), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 34/131 (25%), Positives = 61/131 (46%), Gaps = 13/131 (9%)

Query: 20  RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79
           R  A + LY+I +    +  ++++Y       D   DVE  ++       + I+ G ++R
Sbjct: 4   RNIAFKILYEILVKKGYSNIVLNKY----LNNDGIEDVEKSFI-------KEIVFGTIER 52

Query: 80  KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139
           K  +D +I  C T+     ++D  +  IL  G+ +L+    VP    I+E V +  +   
Sbjct: 53  KYTLDRIIDYCSTK--DIKKIDNKVLIILEMGLFQLMYMDKVPDYAAINESVNLTKEHVG 110

Query: 140 GDEPKFINAVL 150
               KF+NAVL
Sbjct: 111 KYASKFVNAVL 121


>gi|171920577|ref|ZP_02931840.1| transcription antitermination factor NusB [Ureaplasma urealyticum
           serovar 13 str. ATCC 33698]
 gi|185179037|ref|ZP_02964782.1| transcription antitermination factor NusB [Ureaplasma urealyticum
           serovar 5 str. ATCC 27817]
 gi|188024190|ref|ZP_02996905.1| transcription antitermination factor NusB [Ureaplasma urealyticum
           serovar 7 str. ATCC 27819]
 gi|188518637|ref|ZP_03004078.1| transcription antitermination factor NusB [Ureaplasma urealyticum
           serovar 11 str. ATCC 33695]
 gi|188524479|ref|ZP_03004486.1| transcription antitermination factor NusB [Ureaplasma urealyticum
           serovar 12 str. ATCC 33696]
 gi|195867654|ref|ZP_03079656.1| transcription antitermination factor NusB [Ureaplasma urealyticum
           serovar 9 str. ATCC 33175]
 gi|198273709|ref|ZP_03206244.1| transcription antitermination factor NusB [Ureaplasma urealyticum
           serovar 4 str. ATCC 27816]
 gi|209554511|ref|YP_002284699.1| transcription antitermination factor NusB [Ureaplasma urealyticum
           serovar 10 str. ATCC 33699]
 gi|225550715|ref|ZP_03771664.1| transcription antitermination factor NusB [Ureaplasma urealyticum
           serovar 2 str. ATCC 27814]
 gi|225551022|ref|ZP_03771968.1| transcription antitermination factor NusB [Ureaplasma urealyticum
           serovar 8 str. ATCC 27618]
 gi|171903281|gb|EDT49570.1| transcription antitermination factor NusB [Ureaplasma urealyticum
           serovar 13 str. ATCC 33698]
 gi|184209018|gb|EDU06061.1| transcription antitermination factor NusB [Ureaplasma urealyticum
           serovar 5 str. ATCC 27817]
 gi|188018832|gb|EDU56872.1| transcription antitermination factor NusB [Ureaplasma urealyticum
           serovar 7 str. ATCC 27819]
 gi|188997767|gb|EDU66864.1| transcription antitermination factor NusB [Ureaplasma urealyticum
           serovar 11 str. ATCC 33695]
 gi|195659568|gb|EDX52948.1| transcription antitermination factor NusB [Ureaplasma urealyticum
           serovar 12 str. ATCC 33696]
 gi|195660711|gb|EDX53966.1| transcription antitermination factor NusB [Ureaplasma urealyticum
           serovar 9 str. ATCC 33175]
 gi|198249737|gb|EDY74518.1| transcription antitermination factor NusB [Ureaplasma urealyticum
           serovar 4 str. ATCC 27816]
 gi|209542012|gb|ACI60241.1| transcription antitermination factor NusB [Ureaplasma urealyticum
           serovar 10 str. ATCC 33699]
 gi|225378837|gb|EEH01202.1| transcription antitermination factor NusB [Ureaplasma urealyticum
           serovar 8 str. ATCC 27618]
 gi|225379869|gb|EEH02231.1| transcription antitermination factor NusB [Ureaplasma urealyticum
           serovar 2 str. ATCC 27814]
          Length = 127

 Score = 39.7 bits (91), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 22/92 (23%), Positives = 49/92 (53%), Gaps = 2/92 (2%)

Query: 62  LHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSV 121
             +D+ W  V  + ++D  + +  +I   + + W+F RL  +  ++L +   E +   + 
Sbjct: 36  FELDVSWLSVSEY-ILDNCEQLIKMIKPFINKDWTFERLSYVEQALLLSAYGEYLVLKT- 93

Query: 122 PVEVIISEYVCIAHDFFYGDEPKFINAVLDKV 153
           P ++II + +   H++   +  KFINA+LD++
Sbjct: 94  PKKIIIDQTLITTHNYSNDESYKFINAILDQL 125


>gi|328479786|gb|EGF48904.1| transcription antitermination protein NusB [Lactobacillus rhamnosus
           MTCC 5462]
          Length = 145

 Score = 39.7 bits (91), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 24/90 (26%), Positives = 44/90 (48%), Gaps = 6/90 (6%)

Query: 52  DTELDVESVYLHV---DLE---WFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILC 105
           + E D  +VY  V   D E   +   ++ GV+  +  +D  ++  L + W+ SRL     
Sbjct: 41  NPEADKNAVYAEVLPKDTEVPSYLTALVEGVLANQAALDAALTPQLKKGWTLSRLTKPDL 100

Query: 106 SILRAGVLELIECHSVPVEVIISEYVCIAH 135
            ILR G+ E+    ++P    I+E + +A+
Sbjct: 101 IILRLGLYEIRYEEAMPEAAAINEAINLAN 130


>gi|15676581|ref|NP_273725.1| transcription antitermination protein NusB [Neisseria meningitidis
           MC58]
 gi|261377912|ref|ZP_05982485.1| transcription antitermination factor NusB [Neisseria cinerea ATCC
           14685]
 gi|261401063|ref|ZP_05987188.1| transcription antitermination factor NusB [Neisseria lactamica ATCC
           23970]
 gi|304388064|ref|ZP_07370193.1| transcription antitermination factor NusB [Neisseria meningitidis
           ATCC 13091]
 gi|22095969|sp|Q9K0D0|NUSB_NEIMB RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|7225910|gb|AAF41101.1| N utilization substance protein B [Neisseria meningitidis MC58]
 gi|254673604|emb|CBA09124.1| N utilization substance protein B [Neisseria meningitidis alpha275]
 gi|269145771|gb|EEZ72189.1| transcription antitermination factor NusB [Neisseria cinerea ATCC
           14685]
 gi|269208952|gb|EEZ75407.1| transcription antitermination factor NusB [Neisseria lactamica ATCC
           23970]
 gi|304337921|gb|EFM04061.1| transcription antitermination factor NusB [Neisseria meningitidis
           ATCC 13091]
 gi|316983655|gb|EFV62636.1| transcription antitermination factor NusB [Neisseria meningitidis
           H44/76]
 gi|325129787|gb|EGC52595.1| transcription antitermination factor NusB [Neisseria meningitidis
           OX99.30304]
 gi|325133802|gb|EGC56458.1| transcription antitermination factor NusB [Neisseria meningitidis
           M13399]
 gi|325139868|gb|EGC62399.1| transcription antitermination factor NusB [Neisseria meningitidis
           CU385]
 gi|325143929|gb|EGC66239.1| transcription antitermination factor NusB [Neisseria meningitidis
           M01-240013]
 gi|325200631|gb|ADY96086.1| transcription antitermination factor NusB [Neisseria meningitidis
           H44/76]
 gi|325203770|gb|ADY99223.1| transcription antitermination factor NusB [Neisseria meningitidis
           M01-240355]
 gi|325206473|gb|ADZ01926.1| transcription antitermination factor NusB [Neisseria meningitidis
           M04-240196]
          Length = 141

 Score = 39.7 bits (91), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 46/159 (28%), Positives = 65/159 (40%), Gaps = 26/159 (16%)

Query: 10  LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF 69
           +K + RR  +R  AVQA+YQ  I   +  EI    +  R  +D        +   D E F
Sbjct: 1   MKTARRR--SRELAVQAVYQSLINRTAAPEIA---KNIREMSD--------FAKADEELF 47

Query: 70  RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVL----ELIECHSVPVEV 125
             +  G           I   L       R +  L  I RA +L    EL      P  V
Sbjct: 48  NKLFFGTQTNAAEYIRQIRPLL------DRDEKDLNPIERAVLLTACHELSAMPETPYPV 101

Query: 126 IISEYVCIAHDFFYGDEPKFINAVLDKVS---RKEEIKR 161
           II+E + +   F   D  KF+N +LDK++   R +E KR
Sbjct: 102 IINEAIEVTKTFGGTDGHKFVNGILDKLAAQIRPDEPKR 140


>gi|317056478|ref|YP_004104945.1| sun protein [Ruminococcus albus 7]
 gi|315448747|gb|ADU22311.1| sun protein [Ruminococcus albus 7]
          Length = 431

 Score = 39.7 bits (91), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 27/99 (27%), Positives = 50/99 (50%), Gaps = 3/99 (3%)

Query: 65  DLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVE 124
           D ++   + +GV++R+  +D +I      K   S+L+  L +ILR G+ +L    SVP  
Sbjct: 39  DKKFIAALFYGVIERRLTLDAIIVDL--SKNPKSKLNYTLRNILRCGLYQLKYMDSVPDN 96

Query: 125 VIISEYVCIAHDFFYGDEPKFINAVLDK-VSRKEEIKRS 162
             + E V +A        P F N +L + + R +E+ ++
Sbjct: 97  AAVDESVELAKKCRNPAAPGFTNGLLREFIRRSKELPKT 135


>gi|291276400|ref|YP_003516172.1| transcription termination protein [Helicobacter mustelae 12198]
 gi|290963594|emb|CBG39426.1| transcription termination protein [Helicobacter mustelae 12198]
          Length = 130

 Score = 39.7 bits (91), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 26/86 (30%), Positives = 46/86 (53%), Gaps = 6/86 (6%)

Query: 72  IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
           +  G++     +D  I+  L + W F +L  +  +ILR G  E++ C  +   ++I+E +
Sbjct: 49  LFDGILKNLDLLDEQITRHLKD-WEFKKLGGMERAILRLGAYEIL-CCQIDKPIVINEAI 106

Query: 132 CIAHDFFYGDE--PKFINAVLDKVSR 155
            +A    YG+E  PK IN VLD + +
Sbjct: 107 ELAKS--YGEEMAPKLINGVLDSLKK 130


>gi|148244614|ref|YP_001219308.1| N utilization substance protein B [Candidatus Vesicomyosocius
           okutanii HA]
 gi|146326441|dbj|BAF61584.1| N utilization substance protein B [Candidatus Vesicomyosocius
           okutanii HA]
          Length = 141

 Score = 39.7 bits (91), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 38/139 (27%), Positives = 62/139 (44%), Gaps = 18/139 (12%)

Query: 19  ARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMD 78
            R   +QALYQ  + G    +I       +F    +  +  V+       F  +   +++
Sbjct: 10  TRERVIQALYQYLVSGGEVFQI-----EQQFLNQKQGKISKVF-------FSDLFINILE 57

Query: 79  RKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFF 138
            +  +D LI+S ++       L  +  SIL  G  EL     VP +V+I+E + +A    
Sbjct: 58  NRFVLDELITSTISRGTE--ELGSVEHSILYLGTFELKFNSEVPYKVVINESLALAK--L 113

Query: 139 YGDEP--KFINAVLDKVSR 155
           YG E   K IN  LDK++R
Sbjct: 114 YGAEGSYKLINVSLDKLAR 132


>gi|291458605|ref|ZP_06597995.1| ribosomal RNA small subunit methyltransferase B [Oribacterium sp.
           oral taxon 078 str. F0262]
 gi|291419138|gb|EFE92857.1| ribosomal RNA small subunit methyltransferase B [Oribacterium sp.
           oral taxon 078 str. F0262]
          Length = 427

 Score = 39.7 bits (91), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 21/94 (22%), Positives = 47/94 (50%), Gaps = 2/94 (2%)

Query: 65  DLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVE 124
           D  +   +++G ++R   +D  +  C   +    ++  +L ++LR G  +++    VP  
Sbjct: 55  DRAFLTRLVNGTVERSVTLDYFLDRC--SRLKVKKMRPLLRTLLRMGSFQILFSDRVPDS 112

Query: 125 VIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEE 158
             ++E V ++H         F+NAVL ++S ++E
Sbjct: 113 AAVNESVKLSHRRGLSGLSSFVNAVLRRISGEKE 146


>gi|269218512|ref|ZP_06162366.1| ribosomal RNA small subunit methyltransferase B [Actinomyces sp.
           oral taxon 848 str. F0332]
 gi|269211623|gb|EEZ77963.1| ribosomal RNA small subunit methyltransferase B [Actinomyces sp.
           oral taxon 848 str. F0332]
          Length = 534

 Score = 39.3 bits (90), Expect = 0.17,   Method: Composition-based stats.
 Identities = 31/107 (28%), Positives = 50/107 (46%), Gaps = 6/107 (5%)

Query: 64  VDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPV 123
           +D  +   + +G +  +   D +IS C   +  +  +D  +  +LR G  +L+   + P 
Sbjct: 103 LDAAYATNLCYGTLRMRGRWDAIISRCAKGRRIYD-IDPPVLDLLRMGCEQLLAMETPP- 160

Query: 124 EVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKE----EIKRSGCVS 166
              I E V IA +FF      F+NAVL ++S K     EI RS   S
Sbjct: 161 HAAIHETVVIARNFFGQGTGGFVNAVLRRISEKAGQWPEIVRSSTAS 207


>gi|113868812|ref|YP_727301.1| transcription antitermination protein NusB [Ralstonia eutropha H16]
 gi|122946671|sp|Q0K7T8|NUSB_RALEH RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|113527588|emb|CAJ93933.1| transcription termination factor [Ralstonia eutropha H16]
          Length = 172

 Score = 39.3 bits (90), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 24/94 (25%), Positives = 44/94 (46%), Gaps = 2/94 (2%)

Query: 61  YLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHS 120
           +   D E F  +++G +  +  +       L  K     L  +  + L  G  EL+ C  
Sbjct: 69  FNKADREHFDALLNGAVREEARLTAAFEPFLDRK--VEELSPVERAALLVGSYELVHCLD 126

Query: 121 VPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVS 154
           +P +V+I+E V +   F   +  K++N VLDK++
Sbjct: 127 IPYKVVINEAVELTKTFGGVEGYKYVNGVLDKLA 160


>gi|148654081|ref|YP_001281174.1| NusB antitermination factor [Psychrobacter sp. PRwf-1]
 gi|148573165|gb|ABQ95224.1| NusB antitermination factor [Psychrobacter sp. PRwf-1]
          Length = 252

 Score = 39.3 bits (90), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 23/91 (25%), Positives = 48/91 (52%), Gaps = 2/91 (2%)

Query: 64  VDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPV 123
           V L ++  ++  + ++   ++ LI+  L    +  ++DM+  ++L  G  EL     +P 
Sbjct: 87  VHLGYYHTLMREIPEQITDLEALIAQHLDR--AIDKIDMVEHAVLLIGAYELKNSLHIPY 144

Query: 124 EVIISEYVCIAHDFFYGDEPKFINAVLDKVS 154
           +V++ E + +   F   D  K INAV+DK++
Sbjct: 145 KVVLDEAMKLNTHFGATDAHKLINAVMDKLA 175


>gi|42560661|ref|NP_975112.1| transcription termination factor nusB [Mycoplasma mycoides subsp.
           mycoides SC str. PG1]
 gi|42492157|emb|CAE76754.1| transcription termination factor nusB [Mycoplasma mycoides subsp.
           mycoides SC str. PG1]
          Length = 132

 Score = 39.3 bits (90), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 28/79 (35%), Positives = 43/79 (54%), Gaps = 13/79 (16%)

Query: 81  QHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVC----IAHD 136
            HI++ ISS     W + R+  ++ +IL  G  E++  ++ P  V I+E V     I  D
Sbjct: 63  NHININISSS----WKWDRIPAVIRAILIVGTYEILYTNT-PKSVTINEMVKYVKEIEPD 117

Query: 137 FFYGDEPKFINAVLDKVSR 155
           F Y    KF+NAVLDK+ +
Sbjct: 118 FDY----KFVNAVLDKLVK 132


>gi|281420711|ref|ZP_06251710.1| NusB family protein [Prevotella copri DSM 18205]
 gi|281405484|gb|EFB36164.1| NusB family protein [Prevotella copri DSM 18205]
          Length = 355

 Score = 39.3 bits (90), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 18/63 (28%), Positives = 33/63 (52%)

Query: 94  KWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKV 153
            W FSRL  +   I++  + E++    +P  V I+EYV +A  +       ++N +LD +
Sbjct: 242 NWDFSRLAYMDVIIMQIAIAEVMNFPGIPATVTINEYVELAKAYSTPRSGGYVNGMLDSI 301

Query: 154 SRK 156
            R+
Sbjct: 302 CRE 304


>gi|323699091|ref|ZP_08111003.1| NusB antitermination factor [Desulfovibrio sp. ND132]
 gi|323459023|gb|EGB14888.1| NusB antitermination factor [Desulfovibrio desulfuricans ND132]
          Length = 149

 Score = 39.3 bits (90), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 34/144 (23%), Positives = 60/144 (41%), Gaps = 16/144 (11%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLE----WFRV 71
           R + R  A Q LY    +                  DT  D+  + +  + E    + R 
Sbjct: 13  RRVGRTLAFQVLYSTHFLDKENP----------LDMDTLFDLNPMVVEQESETARAFARD 62

Query: 72  IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
           ++ GV      ID  I    ++ W   R+ M+  SILR  + E++    +PV+  I+E +
Sbjct: 63  LVRGVSVNLHDIDRTIEEH-SQHWKIERIAMVELSILRLSLYEML-FTDIPVKAAINEAI 120

Query: 132 CIAHDFFYGDEPKFINAVLDKVSR 155
            ++  F       F+N +LD V++
Sbjct: 121 ELSKTFGDDKSRSFVNGILDGVAK 144


>gi|301167989|emb|CBW27575.1| putative N utilisation protein [Bacteriovorax marinus SJ]
          Length = 157

 Score = 39.3 bits (90), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 26/84 (30%), Positives = 40/84 (47%), Gaps = 1/84 (1%)

Query: 72  IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
           +I GV   K  ++  IS  L  K   ++L+ I  ++L  G  E+    + P  V+I E V
Sbjct: 75  LIDGVFTNKASLEDEISKHL-RKRKINQLEKIDYALLMLGCYEIQNVDATPKAVVIDEMV 133

Query: 132 CIAHDFFYGDEPKFINAVLDKVSR 155
            +A  F   D   FIN  LD + +
Sbjct: 134 NLARKFGTADTYSFINGTLDSIGK 157


>gi|325279484|ref|YP_004252026.1| NusB antitermination factor [Odoribacter splanchnicus DSM 20712]
 gi|324311293|gb|ADY31846.1| NusB antitermination factor [Odoribacter splanchnicus DSM 20712]
          Length = 320

 Score = 39.3 bits (90), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 24/89 (26%), Positives = 41/89 (46%), Gaps = 1/89 (1%)

Query: 65  DLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVE 124
           D E+ R ++      + + ++ I    T  W   R+  +   I+   + EL    S+PV+
Sbjct: 209 DFEYARTLMRKAF-YEYNANMEIIDKFTYNWELDRISEMDKLIMSCAISELKHFPSIPVK 267

Query: 125 VIISEYVCIAHDFFYGDEPKFINAVLDKV 153
           V + EY+ I+  +       FIN VLDK 
Sbjct: 268 VTLDEYIEISKTYSSPKSGAFINGVLDKA 296


>gi|261337964|ref|ZP_05965848.1| transcription antitermination factor NusB [Bifidobacterium gallicum
           DSM 20093]
 gi|270277459|gb|EFA23313.1| transcription antitermination factor NusB [Bifidobacterium gallicum
           DSM 20093]
          Length = 149

 Score = 39.3 bits (90), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 24/79 (30%), Positives = 40/79 (50%), Gaps = 1/79 (1%)

Query: 72  IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
           I+ GV D ++ +D +I+   T  W   R+ +I  +ILR    E+I    +P +V I E +
Sbjct: 48  IVEGVADNRKDLDRIINEHST-GWKVWRMPVIDRNILRIAAWEIIHNDEIPDKVAIDEAL 106

Query: 132 CIAHDFFYGDEPKFINAVL 150
            +A      +   FI+ VL
Sbjct: 107 NLAKTLSDDESLGFIHGVL 125


>gi|51243976|ref|YP_063860.1| SUN protein (Fmu protein) [Desulfotalea psychrophila LSv54]
 gi|50875013|emb|CAG34853.1| related to SUN protein (FMU protein) [Desulfotalea psychrophila
           LSv54]
          Length = 454

 Score = 39.3 bits (90), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 27/121 (22%), Positives = 56/121 (46%), Gaps = 17/121 (14%)

Query: 48  RFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSI 107
           + C   +L+     L +++      + GV+ ++Q++D+L+    T +    +LD  +   
Sbjct: 29  KLCQQKQLNPRERSLAMNM------VFGVLRKRQYLDILLRKLSTVR--LKKLDPFVHQA 80

Query: 108 LRAGVLELIECHSVPVEVIISEYV-----CIAHDFFYGDEPKFINAVLDKVSRKEEIKRS 162
           L  G+ +L    S+P   I++E V        H   +G    F+N +L   +R++E   +
Sbjct: 81  LTVGLYQLFFLDSIPESAIVNEAVNSCKTAKVHKRLHG----FVNGILRNATRQKEALAN 136

Query: 163 G 163
           G
Sbjct: 137 G 137


>gi|227499084|ref|ZP_03929221.1| NusB antitermination factor [Acidaminococcus sp. D21]
 gi|226904533|gb|EEH90451.1| NusB antitermination factor [Acidaminococcus sp. D21]
          Length = 140

 Score = 39.3 bits (90), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 34/140 (24%), Positives = 66/140 (47%), Gaps = 11/140 (7%)

Query: 19  ARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLE-WFRVIIHGVM 77
           AR  A+++L+ +D      T  +S  +T +   + E   ++  L  D E +   ++ G  
Sbjct: 6   ARTLAMKSLFSLDF-----TTDVSPLDTVKALLEDE---DTPALPKDDENYAAALVTGTR 57

Query: 78  DRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLEL-IECHSVPVEVIISEYVCIAHD 136
           +  + ID ++ + L+++W   R+  +  ++LR    E+      +   + ISE V IA  
Sbjct: 58  EHLEAIDSVLDT-LSDEWKVKRMAGVDRNLLRMAAFEMYFSPQKIAPAIAISEAVEIAKI 116

Query: 137 FFYGDEPKFINAVLDKVSRK 156
           +   D P FIN +L  + R 
Sbjct: 117 YGGDDSPHFINGLLGTLVRN 136


>gi|300775935|ref|ZP_07085795.1| conserved hypothetical protein [Chryseobacterium gleum ATCC 35910]
 gi|300505485|gb|EFK36623.1| conserved hypothetical protein [Chryseobacterium gleum ATCC 35910]
          Length = 301

 Score = 39.3 bits (90), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 22/60 (36%), Positives = 29/60 (48%)

Query: 93  EKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDK 152
           E W   R+ ++   IL   + EL      P  VII+EY+ IA  F       FIN +LDK
Sbjct: 234 ENWDLERVSLMDKVILSTAIAELDNFAFTPSRVIINEYIEIAKVFATDRSNIFINGILDK 293


>gi|332975638|gb|EGK12527.1| NusB antitermination factor [Psychrobacter sp. 1501(2011)]
          Length = 244

 Score = 39.3 bits (90), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 23/91 (25%), Positives = 48/91 (52%), Gaps = 2/91 (2%)

Query: 64  VDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPV 123
           V L ++  ++  + ++   ++ LI+  L  +    ++DM+  ++L  G  EL     +P 
Sbjct: 79  VHLGYYHTLMREIPEQIDELEALIAEHLDRQ--IDQIDMVEHAVLLIGAYELKHSLHIPY 136

Query: 124 EVIISEYVCIAHDFFYGDEPKFINAVLDKVS 154
           +V++ E + +   F   D  K INAV+DK++
Sbjct: 137 KVVLDEAMKLNTHFGATDAHKLINAVMDKLA 167


>gi|303239358|ref|ZP_07325886.1| sun protein [Acetivibrio cellulolyticus CD2]
 gi|302593144|gb|EFL62864.1| sun protein [Acetivibrio cellulolyticus CD2]
          Length = 450

 Score = 39.3 bits (90), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 30/138 (21%), Positives = 64/138 (46%), Gaps = 13/138 (9%)

Query: 18  IARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVM 77
           + R  A++ LY I+  G  +   +++Y       D  L        +D  +   +++G +
Sbjct: 5   LPRETALKILYDINKSGAYSNIALNKY-----LEDKALS------GLDKAFITELVYGTL 53

Query: 78  DRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDF 137
             +  ID +I    + K   ++L   + +ILR GV +++    +P     +E V +A  +
Sbjct: 54  KWRLSIDYIIDQFSSVK--INKLSPWILNILRLGVYQIVYMSKIPESAACNESVNLAKRY 111

Query: 138 FYGDEPKFINAVLDKVSR 155
            +    +++NA+L  V+R
Sbjct: 112 GHSASSRYVNAMLRNVAR 129


>gi|154508791|ref|ZP_02044433.1| hypothetical protein ACTODO_01300 [Actinomyces odontolyticus ATCC
           17982]
 gi|153798425|gb|EDN80845.1| hypothetical protein ACTODO_01300 [Actinomyces odontolyticus ATCC
           17982]
          Length = 490

 Score = 39.3 bits (90), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 25/98 (25%), Positives = 47/98 (47%), Gaps = 3/98 (3%)

Query: 72  IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
           ++HG +     +D +IS  +      + LD     +LR G  +L++   VP    +S  V
Sbjct: 65  LVHGTLRAIGRLDWVISRHIDRP--LADLDPRALVVLRMGAHQLLDMR-VPDHAAVSATV 121

Query: 132 CIAHDFFYGDEPKFINAVLDKVSRKEEIKRSGCVSAIT 169
            +A +       +F+NAVL  ++R++  +R   + AI 
Sbjct: 122 DVAREHLTDGPVRFVNAVLRSITREDPSEREAAMDAIA 159


>gi|309775471|ref|ZP_07670473.1| N utilization substance protein B [Erysipelotrichaceae bacterium
           3_1_53]
 gi|308916767|gb|EFP62505.1| N utilization substance protein B [Erysipelotrichaceae bacterium
           3_1_53]
          Length = 81

 Score = 39.3 bits (90), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 25/81 (30%), Positives = 41/81 (50%), Gaps = 2/81 (2%)

Query: 73  IHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVC 132
           I  V  R  +ID  I+  L + W+F RL  +  +IL     EL +  + P  ++I E V 
Sbjct: 3   IDAVAYRDVYIDK-INEALRQDWTFDRLGFVEQAILLMAACEL-DLETAPKAIVIDEAVT 60

Query: 133 IAHDFFYGDEPKFINAVLDKV 153
           +A  +   +  + IN VLD++
Sbjct: 61  LAKKYCDDETYRLINGVLDRL 81


>gi|331001107|ref|ZP_08324738.1| transcription antitermination factor NusB [Parasutterella
           excrementihominis YIT 11859]
 gi|329569412|gb|EGG51190.1| transcription antitermination factor NusB [Parasutterella
           excrementihominis YIT 11859]
          Length = 159

 Score = 39.3 bits (90), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 30/98 (30%), Positives = 45/98 (45%), Gaps = 19/98 (19%)

Query: 64  VDLEWFRVIIHGVMDR--------KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLEL 115
            D  ++R ++HGV +           HID  ++S          L  I  +IL  G  EL
Sbjct: 58  ADQAFYRELLHGVTEEFPSLEASYAPHIDREVTS----------LSPIERAILLIGTYEL 107

Query: 116 IECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKV 153
               + P  V+I+E V +A  F   D  K++N VLDK+
Sbjct: 108 KNT-TTPYRVVINEAVELAKSFGGSDGFKYVNGVLDKM 144


>gi|293192811|ref|ZP_06609706.1| ribosomal RNA small subunit methyltransferase B [Actinomyces
           odontolyticus F0309]
 gi|292820058|gb|EFF79056.1| ribosomal RNA small subunit methyltransferase B [Actinomyces
           odontolyticus F0309]
          Length = 490

 Score = 39.3 bits (90), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 25/98 (25%), Positives = 47/98 (47%), Gaps = 3/98 (3%)

Query: 72  IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
           ++HG +     +D +IS  +      + LD     +LR G  +L++   VP    +S  V
Sbjct: 65  LVHGTLRAIGRLDWVISRHIDRP--LADLDPRALVVLRMGTHQLLDMR-VPDHAAVSATV 121

Query: 132 CIAHDFFYGDEPKFINAVLDKVSRKEEIKRSGCVSAIT 169
            +A +       +F+NAVL  ++R++  +R   + AI 
Sbjct: 122 DVAREHLTDGPVRFVNAVLRSITREDPSEREAAMDAIA 159


>gi|312898700|ref|ZP_07758090.1| ribosomal RNA small subunit methyltransferase B [Megasphaera
           micronuciformis F0359]
 gi|310620619|gb|EFQ04189.1| ribosomal RNA small subunit methyltransferase B [Megasphaera
           micronuciformis F0359]
          Length = 441

 Score = 39.3 bits (90), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 24/94 (25%), Positives = 46/94 (48%), Gaps = 2/94 (2%)

Query: 65  DLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVE 124
           D  ++  +++G +    ++D +I    + K +   LD +  ++LR G+ +L     VP  
Sbjct: 38  DRRFYTELVYGTLRSLNYVDYIIGILSSRKKN--SLDPVCLAVLRMGLYQLFFMDKVPPS 95

Query: 125 VIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEE 158
              +E V +A  F      KF+NA+L    R++E
Sbjct: 96  AACNEAVKLARRFGNEGMAKFVNALLRNSLRQKE 129


>gi|255994610|ref|ZP_05427745.1| transcription antitermination factor NusB [Eubacterium saphenum
           ATCC 49989]
 gi|255993323|gb|EEU03412.1| transcription antitermination factor NusB [Eubacterium saphenum
           ATCC 49989]
          Length = 135

 Score = 39.3 bits (90), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 35/145 (24%), Positives = 63/145 (43%), Gaps = 20/145 (13%)

Query: 15  RRGIARLAAVQALYQIDIIGCS----TTEIISEYETYRFCADTELDVESVYLHVDLEWFR 70
            R  AR  A+Q ++QI +   +      +I+S+Y+         +  E  Y+       R
Sbjct: 4   NRSKARTIAMQIIFQIPVHKTTDKVLVDKILSDYKN--------IGKEEAYI-------R 48

Query: 71  VIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEY 130
            +   V D    ID  +++ + + W+   +  +  +ILR  V E+     +P  V ++E 
Sbjct: 49  EVFSLVTDNIDAIDAELNAKM-KGWTIDSIPKVDLAILRLAVAEICYAKDIPKVVAVNEA 107

Query: 131 VCIAHDFFYGDEPKFINAVLDKVSR 155
           V IA  F      KFIN +L  + +
Sbjct: 108 VRIAKKFSDDKSAKFINGILANIGK 132


>gi|238917018|ref|YP_002930535.1| N utilization substance protein B [Eubacterium eligens ATCC 27750]
 gi|238872378|gb|ACR72088.1| N utilization substance protein B [Eubacterium eligens ATCC 27750]
          Length = 135

 Score = 39.3 bits (90), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 21/65 (32%), Positives = 33/65 (50%), Gaps = 1/65 (1%)

Query: 90  CLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDE-PKFINA 148
            ++E W  SRL     SI+R  V E++    +P  V ++E V +A  +   D    F+N 
Sbjct: 68  SVSEGWPTSRLGKTELSIMRLAVYEMLYDEDIPTNVALNEAVELAKKYGSADSTAAFVNG 127

Query: 149 VLDKV 153
           VL K+
Sbjct: 128 VLGKL 132


>gi|256383931|gb|ACU78501.1| transcription antitermination factor NusB [Mycoplasma mycoides
           subsp. capri str. GM12]
 gi|256384763|gb|ACU79332.1| transcription antitermination factor NusB [Mycoplasma mycoides
           subsp. capri str. GM12]
 gi|296455225|gb|ADH21460.1| transcription antitermination factor NusB [synthetic Mycoplasma
           mycoides JCVI-syn1.0]
          Length = 132

 Score = 38.9 bits (89), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 27/79 (34%), Positives = 43/79 (54%), Gaps = 13/79 (16%)

Query: 81  QHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVC----IAHD 136
            HI++ +SS     W + R+  ++ +IL  G  E++  ++ P  V I+E V     I  D
Sbjct: 63  NHININVSSS----WKWDRIPAVIRAILIVGTYEILYTNT-PKPVTINEMVKYVKEIEPD 117

Query: 137 FFYGDEPKFINAVLDKVSR 155
           F Y    KF+NAVLDK+ +
Sbjct: 118 FDY----KFVNAVLDKLVK 132


>gi|154483655|ref|ZP_02026103.1| hypothetical protein EUBVEN_01359 [Eubacterium ventriosum ATCC
           27560]
 gi|149735565|gb|EDM51451.1| hypothetical protein EUBVEN_01359 [Eubacterium ventriosum ATCC
           27560]
          Length = 131

 Score = 38.9 bits (89), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 20/81 (24%), Positives = 39/81 (48%), Gaps = 1/81 (1%)

Query: 73  IHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVC 132
           +  + ++   ID  I+     KW+  R+  +  +ILR    E+     +P +V + + + 
Sbjct: 51  VDAIAEKIDEIDEAINKAAV-KWTTDRMSKVDLTILRLAYYEMKIDEDIPEKVAVDQAIE 109

Query: 133 IAHDFFYGDEPKFINAVLDKV 153
           +A  +   D P F+N VL K+
Sbjct: 110 LAKKYGTDDSPSFVNGVLAKL 130


>gi|291520794|emb|CBK79087.1| transcription antitermination factor NusB [Coprococcus catus GD/7]
          Length = 131

 Score = 38.9 bits (89), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 20/59 (33%), Positives = 31/59 (52%)

Query: 95  WSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKV 153
           W   R+  +  +I+R  V E+     +PV V I+E V +A  +   + P FIN VL K+
Sbjct: 72  WQTERMGKVDLTIIRLAVYEMKYDDDIPVSVAINEAVELAKRYGSENSPAFINGVLAKM 130


>gi|307701058|ref|ZP_07638083.1| transcription antitermination factor NusB [Mobiluncus mulieris
           FB024-16]
 gi|307614053|gb|EFN93297.1| transcription antitermination factor NusB [Mobiluncus mulieris
           FB024-16]
          Length = 197

 Score = 38.9 bits (89), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 23/91 (25%), Positives = 45/91 (49%), Gaps = 1/91 (1%)

Query: 68  WFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVII 127
           + R I+ GV +  + ID  +++  +  WS  R+  +  +I+R    E++    V   V I
Sbjct: 53  YAREILEGVAEHLERIDAALAT-YSRAWSLHRMPEVDLAIMRVATWEILFNPDVDGPVAI 111

Query: 128 SEYVCIAHDFFYGDEPKFINAVLDKVSRKEE 158
           +  + +A +    + PKFIN +L  ++   E
Sbjct: 112 TAAMQLAAERSTDESPKFINGLLGTINDMRE 142


>gi|83319650|ref|YP_424054.1| N utilization substance protein B (nusB), putative [Mycoplasma
           capricolum subsp. capricolum ATCC 27343]
 gi|83283536|gb|ABC01468.1| N utilization substance protein B (nusB), putative [Mycoplasma
           capricolum subsp. capricolum ATCC 27343]
          Length = 132

 Score = 38.9 bits (89), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 41/138 (29%), Positives = 63/138 (45%), Gaps = 22/138 (15%)

Query: 20  RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79
           R   +QA Y+  ++  S   I      Y+   D   DV++      L    +I    +D 
Sbjct: 11  RKLLIQAFYKYQLLNASIDYI------YQDVLD---DVQNFNNKQLLFEINLIAEKQVDL 61

Query: 80  KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVC----IAH 135
             HI++ ISS     W + R+  ++ +IL  G  E++   + P  V I+E V     I  
Sbjct: 62  INHININISS----NWKWDRIPAVIRAILIVGTYEILYTDT-PKPVTINEMVNYVKEIEP 116

Query: 136 DFFYGDEPKFINAVLDKV 153
           DF Y    KF+NAVLDK+
Sbjct: 117 DFDY----KFVNAVLDKI 130


>gi|33864549|ref|NP_896108.1| transcription antitermination protein NusB [Synechococcus sp. WH
           8102]
 gi|33632072|emb|CAE06525.1| NusB family protein [Synechococcus sp. WH 8102]
          Length = 211

 Score = 38.9 bits (89), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 29/88 (32%), Positives = 41/88 (46%), Gaps = 9/88 (10%)

Query: 72  IIHGVMDR-------KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVE 124
           I HG MDR       +  ID  + S + E W  SRL  +   ILR  V++L +    P  
Sbjct: 116 IRHGAMDRVSCVLNKRDRIDAELDSVM-EGWRLSRLPRLDRDILRLAVVDLRDL-GTPAP 173

Query: 125 VIISEYVCIAHDFFYGDEPKFINAVLDK 152
           V  SE V +A+ +      + IN VL +
Sbjct: 174 VAFSEAVELANRYSDEQGRRMINGVLRR 201


>gi|149928254|ref|ZP_01916498.1| transcription antitermination protein NusB [Limnobacter sp. MED105]
 gi|149823060|gb|EDM82301.1| transcription antitermination protein NusB [Limnobacter sp. MED105]
          Length = 162

 Score = 38.9 bits (89), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 37/148 (25%), Positives = 60/148 (40%), Gaps = 16/148 (10%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           R  +R  A+Q LYQ  +      E+           D  +     +   D E +  ++HG
Sbjct: 20  RRRSRELALQGLYQWFLNPTEVGEV-----------DAHIRDAPGFDKADREHYESLLHG 68

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
            +   + +   I   +   W    L  +  ++L     E+     +P  V+I+E V +  
Sbjct: 69  SVHHLEDLMHQIQPFIDRPWG--ELSPVEKAVLVLASHEMNTHAEIPYRVVINEAVELTK 126

Query: 136 DFFYGDEPKFINAVLDKV---SRKEEIK 160
            F   D  KF+N VLDKV   +R  EIK
Sbjct: 127 TFGGTDAFKFVNGVLDKVAAQARDSEIK 154


>gi|158320645|ref|YP_001513152.1| NusB antitermination factor [Alkaliphilus oremlandii OhILAs]
 gi|166918801|sp|A8MFJ3|NUSB_ALKOO RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|158140844|gb|ABW19156.1| NusB antitermination factor [Alkaliphilus oremlandii OhILAs]
          Length = 138

 Score = 38.9 bits (89), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 25/89 (28%), Positives = 43/89 (48%), Gaps = 5/89 (5%)

Query: 73  IHGVMDRK----QHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIIS 128
           IH V++      + ID +I    T  W  +R+  +  +ILR    E+I    +P  V I+
Sbjct: 45  IHKVLNEAILNLEAIDSIIEEYST-SWKLNRIANVDLAILRLAFSEIIYMKDIPYRVSIN 103

Query: 129 EYVCIAHDFFYGDEPKFINAVLDKVSRKE 157
           E + +A  +   + P F+N +L K   +E
Sbjct: 104 EAIELAKIYGSDETPNFVNGILGKYVEQE 132


>gi|160880647|ref|YP_001559615.1| NusB antitermination factor [Clostridium phytofermentans ISDg]
 gi|189035885|sp|A9KMC2|NUSB_CLOPH RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|160429313|gb|ABX42876.1| NusB antitermination factor [Clostridium phytofermentans ISDg]
          Length = 132

 Score = 38.9 bits (89), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 21/87 (24%), Positives = 43/87 (49%), Gaps = 1/87 (1%)

Query: 67  EWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVI 126
           E+  V    + ++   ID ++++  +  W  +R+  +  +I+R    E+     VPV+V 
Sbjct: 45  EYLNVRFDKINEKLGEIDTILANA-SSGWKLNRMGKVDLNIMRLATFEIRFDDEVPVKVA 103

Query: 127 ISEYVCIAHDFFYGDEPKFINAVLDKV 153
           I+E + +A  +       F+N +L KV
Sbjct: 104 INEAIELAKKYGGDSSASFVNGILAKV 130


>gi|297571422|ref|YP_003697196.1| NusB antitermination factor [Arcanobacterium haemolyticum DSM
           20595]
 gi|296931769|gb|ADH92577.1| NusB antitermination factor [Arcanobacterium haemolyticum DSM
           20595]
          Length = 159

 Score = 38.9 bits (89), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 32/162 (19%), Positives = 77/162 (47%), Gaps = 15/162 (9%)

Query: 1   MTIQDNKKDLKLSHRRG--IARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVE 58
           M+ ++  +  + + R+G  + R  A+  LY+ D+ G    ++ S  E     + ++  ++
Sbjct: 1   MSNEERTQQRRNNGRKGRSLQRQRALDVLYEADVRGAEH-DLASLLEERSQLSPSQQPIQ 59

Query: 59  SVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIEC 118
                   ++ ++I+    +    +D +I +  + +W+ +R+ ++  ++LR G  EL+  
Sbjct: 60  --------KYGQLIVSTYAEWADDVDSMIEAA-SPQWALARMSVVDRNLLRIGATELMYL 110

Query: 119 HSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVS--RKEE 158
             VP  +++ E   +  DF       F   VL++++  R EE
Sbjct: 111 D-VPTAIVVKEITALVRDFSTDKAVGFTMGVLNRIAEIRSEE 151


>gi|257068637|ref|YP_003154892.1| transcription antitermination factor NusB [Brachybacterium faecium
           DSM 4810]
 gi|256559455|gb|ACU85302.1| transcription antitermination factor NusB [Brachybacterium faecium
           DSM 4810]
          Length = 178

 Score = 38.9 bits (89), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 33/141 (23%), Positives = 57/141 (40%), Gaps = 13/141 (9%)

Query: 14  HRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVII 73
           H R   R+ A+  L++ D       +++ E    R  A T L           +W R ++
Sbjct: 42  HGRSRERIRAIDVLFEADAKRIDVLDVLQE-RLRRTAAQTPLP----------QWSRTLV 90

Query: 74  HGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVE-VIISEYVC 132
                    ID  +++  +  W   R+  +  +ILR G  E++          II EY  
Sbjct: 91  ELYAPHAVDIDEDLATH-SRDWPLHRMPAVDRAILRLGAAEVLYGEEESRRGTIIGEYTK 149

Query: 133 IAHDFFYGDEPKFINAVLDKV 153
           IA      D P+F+N +L ++
Sbjct: 150 IAEVLSTDDSPRFVNGLLQRL 170


>gi|172036538|ref|YP_001803039.1| transcription antitermination protein NusB [Cyanothece sp. ATCC
           51142]
 gi|254772628|sp|B1WXY6|NUSB_CYAA5 RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|171697992|gb|ACB50973.1| transcription termination factor, N utilization substance protein B
           [Cyanothece sp. ATCC 51142]
          Length = 209

 Score = 38.9 bits (89), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 27/83 (32%), Positives = 43/83 (51%), Gaps = 2/83 (2%)

Query: 72  IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
           +I  +  R++ ID  + + L + W   RL  I   ILR  V E++    VP +V I+E V
Sbjct: 123 LIGTINRRRKEIDEQLEAVLKD-WQLKRLAKIDQDILRLAVAEIL-FLDVPEKVSINEAV 180

Query: 132 CIAHDFFYGDEPKFINAVLDKVS 154
            +A  +   D  +FIN VL + +
Sbjct: 181 ELAKRYSDDDGYRFINGVLRRFT 203


>gi|297834138|ref|XP_002884951.1| NOL1/NOP2/sun family protein [Arabidopsis lyrata subsp. lyrata]
 gi|297330791|gb|EFH61210.1| NOL1/NOP2/sun family protein [Arabidopsis lyrata subsp. lyrata]
          Length = 525

 Score = 38.9 bits (89), Expect = 0.23,   Method: Composition-based stats.
 Identities = 26/88 (29%), Positives = 47/88 (53%), Gaps = 2/88 (2%)

Query: 72  IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
           ++ G +  ++++D LI S    + +F  ++ +L  ILR GV E+I+   +P   ++ E V
Sbjct: 117 VVGGTIRWRRYLDHLIGSLCHNERTFRNMEPLLLQILRIGVYEIIK-RDMPPYAVVDENV 175

Query: 132 CIAHDFFYGDEPKFINAVLDK-VSRKEE 158
            +A          F+N +L K VS KE+
Sbjct: 176 RLAKVALRPGAGDFVNGILRKLVSLKEK 203


>gi|22331043|ref|NP_187924.2| NOL1/NOP2/sun family protein / antitermination NusB
           domain-containing protein [Arabidopsis thaliana]
 gi|18176252|gb|AAL60011.1| putative sun protein fmu [Arabidopsis thaliana]
 gi|21436219|gb|AAM51397.1| putative sun protein fmu [Arabidopsis thaliana]
 gi|110740623|dbj|BAE98415.1| putative sun (fmu) protein [Arabidopsis thaliana]
 gi|332641785|gb|AEE75306.1| ribosomal RNA small subunit methyltransferase B [Arabidopsis
           thaliana]
          Length = 523

 Score = 38.9 bits (89), Expect = 0.23,   Method: Composition-based stats.
 Identities = 26/88 (29%), Positives = 47/88 (53%), Gaps = 2/88 (2%)

Query: 72  IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
           ++ G +  ++++D LI S    + +F  ++ +L  ILR GV E+I+   +P   ++ E V
Sbjct: 115 VVGGTIRWRRYLDHLIGSLCHNERTFRNMEPLLLQILRIGVYEIIK-RDMPPYAVVDENV 173

Query: 132 CIAHDFFYGDEPKFINAVLDK-VSRKEE 158
            +A          F+N +L K VS KE+
Sbjct: 174 RLAKVALRPGAGDFVNGILRKLVSLKEK 201


>gi|10172606|dbj|BAB01410.1| unnamed protein product [Arabidopsis thaliana]
          Length = 531

 Score = 38.9 bits (89), Expect = 0.23,   Method: Composition-based stats.
 Identities = 26/88 (29%), Positives = 47/88 (53%), Gaps = 2/88 (2%)

Query: 72  IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
           ++ G +  ++++D LI S    + +F  ++ +L  ILR GV E+I+   +P   ++ E V
Sbjct: 123 VVGGTIRWRRYLDHLIGSLCHNERTFRNMEPLLLQILRIGVYEIIK-RDMPPYAVVDENV 181

Query: 132 CIAHDFFYGDEPKFINAVLDK-VSRKEE 158
            +A          F+N +L K VS KE+
Sbjct: 182 RLAKVALRPGAGDFVNGILRKLVSLKEK 209


>gi|331703119|ref|YP_004399806.1| transcription termination factor NusB [Mycoplasma mycoides subsp.
           capri LC str. 95010]
 gi|328801674|emb|CBW53827.1| Transcription termination factor NusB [Mycoplasma mycoides subsp.
           capri LC str. 95010]
          Length = 132

 Score = 38.9 bits (89), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 27/82 (32%), Positives = 45/82 (54%), Gaps = 11/82 (13%)

Query: 80  KQHIDLL--ISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVC----I 133
           K+  DL+  I++ ++  W + R+  ++ +IL  G  E++   + P  V I+E V     I
Sbjct: 56  KKQTDLINHINTNVSSSWKWDRIPAVIRAILIVGTYEILYTDT-PKPVTINEMVKYVKEI 114

Query: 134 AHDFFYGDEPKFINAVLDKVSR 155
             DF Y    KF+NAVLDK+ +
Sbjct: 115 EPDFDY----KFVNAVLDKLVK 132


>gi|73540472|ref|YP_294992.1| transcription antitermination protein NusB [Ralstonia eutropha
           JMP134]
 gi|119390803|sp|Q474N5|NUSB_RALEJ RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|72117885|gb|AAZ60148.1| NusB antitermination factor [Ralstonia eutropha JMP134]
          Length = 167

 Score = 38.9 bits (89), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 24/94 (25%), Positives = 44/94 (46%), Gaps = 2/94 (2%)

Query: 61  YLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHS 120
           +   D E F  +++G +  +  +       L  K     L  +  + L  G  EL+ C  
Sbjct: 64  FNKADSEHFDALLNGAVREEARLTAAFEPFLDRK--VEELSPVERAALLVGSYELVHCVD 121

Query: 121 VPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVS 154
           +P +V+I+E V +   F   +  K++N VLDK++
Sbjct: 122 IPYKVVINEAVELTKTFGGVEGYKYVNGVLDKLA 155


>gi|118581643|ref|YP_902893.1| sun protein [Pelobacter propionicus DSM 2379]
 gi|118504353|gb|ABL00836.1| sun protein [Pelobacter propionicus DSM 2379]
          Length = 452

 Score = 38.9 bits (89), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 38/153 (24%), Positives = 67/153 (43%), Gaps = 18/153 (11%)

Query: 6   NKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVD 65
           +  DLK S+     R +A   L +I   GC   +++          D EL+   +    D
Sbjct: 2   SAPDLKRSN----PRQSACSVLLRIQREGCYADQLM----------DRELESGGLT-GPD 46

Query: 66  LEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEV 125
              F  ++ G + R+  +D ++SS LT+    SRL+     +LR G+ +L+    +P   
Sbjct: 47  RGLFAELVFGALRRQGTLDHILSSLLTQP--LSRLEPQALILLRVGLYQLVYLDRIPESA 104

Query: 126 IISEYVCIAHDFFYGDEPKFINAVLDKVSRKEE 158
            ++E V +A           +NAVL    R+ +
Sbjct: 105 AVNESVNLAKKTLPRAS-GLVNAVLRNYLRRGD 136


>gi|161507739|ref|YP_001577700.1| transcription termination [Lactobacillus helveticus DPC 4571]
 gi|160348728|gb|ABX27402.1| transcription termination [Lactobacillus helveticus DPC 4571]
          Length = 130

 Score = 38.9 bits (89), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 26/132 (19%), Positives = 59/132 (44%), Gaps = 11/132 (8%)

Query: 19  ARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMD 78
           +R  A+QA+Y    +     ++ +E    +  A   L   S Y        + +I GV++
Sbjct: 6   SRKVAMQAVY----LANQEPDLSAEDVEAKVVATLNLKQLSAY-------SKKLIEGVLE 54

Query: 79  RKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFF 138
            ++ +   +++ L + W   R+  I+ +I+   + E+     +  +  ++E + +  +F 
Sbjct: 55  NREDLQSELTNHLKKSWRLERVSQIVVAIMEVALFEIKNSDKIDPKAAVNEALNLCDEFA 114

Query: 139 YGDEPKFINAVL 150
              E  FIN +L
Sbjct: 115 EPKEKPFINGML 126


>gi|116625277|ref|YP_827433.1| NusB antitermination factor [Candidatus Solibacter usitatus
           Ellin6076]
 gi|122252386|sp|Q01T72|NUSB_SOLUE RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|116228439|gb|ABJ87148.1| NusB antitermination factor [Candidatus Solibacter usitatus
           Ellin6076]
          Length = 146

 Score = 38.9 bits (89), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 24/85 (28%), Positives = 40/85 (47%), Gaps = 2/85 (2%)

Query: 72  IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
           ++ G ++    +D  I+    E W   R+  +  +ILR  V E+      P  V I E +
Sbjct: 51  LVRGTVEHLAEVDDRITRH-AEHWRMERMPAVDRNILRLAVYEMTRG-GTPAPVTIDEAL 108

Query: 132 CIAHDFFYGDEPKFINAVLDKVSRK 156
            +A  F   +  +F+N VLD V R+
Sbjct: 109 ELARKFSNEESVQFVNGVLDAVRRE 133


>gi|330752415|emb|CBL87366.1| thioredoxin family protein [uncultured Flavobacteria bacterium]
          Length = 307

 Score = 38.9 bits (89), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 21/63 (33%), Positives = 33/63 (52%)

Query: 89  SCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINA 148
           S  T  W   R+  +   IL+  + EL+   ++PV+  I+EY+ IA ++       FIN 
Sbjct: 227 SGKTPNWDKERIAGLDYVILKMAISELLYFPTIPVKATINEYLEIAKEYATPKSAIFING 286

Query: 149 VLD 151
           VLD
Sbjct: 287 VLD 289


>gi|194290431|ref|YP_002006338.1| transcription antitermination protein nusb [Cupriavidus taiwanensis
           LMG 19424]
 gi|193224266|emb|CAQ70275.1| antitermination factor (N UTILIZATION SUBSTANCE B) (TRANSCRIPTIONAL
           ANTITERMINATOR) [Cupriavidus taiwanensis LMG 19424]
          Length = 172

 Score = 38.9 bits (89), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 24/91 (26%), Positives = 43/91 (47%), Gaps = 2/91 (2%)

Query: 64  VDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPV 123
            D E F  +++G +  +  +       L    S   L  +  + L  G  EL+ C  +P 
Sbjct: 72  ADREHFDALLNGAVREEARLTAAFEPFLDR--SVDELSPVERAALLVGSYELVHCLDIPY 129

Query: 124 EVIISEYVCIAHDFFYGDEPKFINAVLDKVS 154
           +V+I+E V +   F   +  K++N VLDK++
Sbjct: 130 KVVINEAVELTKTFGGVEGYKYVNGVLDKLA 160


>gi|260101433|ref|ZP_05751670.1| transcriptional termination factor [Lactobacillus helveticus DSM
           20075]
 gi|260084773|gb|EEW68893.1| transcriptional termination factor [Lactobacillus helveticus DSM
           20075]
          Length = 135

 Score = 38.9 bits (89), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 26/132 (19%), Positives = 59/132 (44%), Gaps = 11/132 (8%)

Query: 19  ARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMD 78
           +R  A+QA+Y    +     ++ +E    +  A   L   S Y        + +I GV++
Sbjct: 11  SRKVAMQAVY----LANQEPDLSAEDVETKVVATLNLKQLSAY-------SKKLIEGVLE 59

Query: 79  RKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFF 138
            ++ +   +++ L + W   R+  I+ +I+   + E+     +  +  ++E + +  +F 
Sbjct: 60  NREDLQSELTNHLKKSWRLERVSQIVVAIMEVALFEIKNSDEIDPKAAVNEALNLCDEFA 119

Query: 139 YGDEPKFINAVL 150
              E  FIN +L
Sbjct: 120 EPKEKPFINGML 131


>gi|329903611|ref|ZP_08273569.1| Transcription termination protein NusB [Oxalobacteraceae bacterium
           IMCC9480]
 gi|327548271|gb|EGF32966.1| Transcription termination protein NusB [Oxalobacteraceae bacterium
           IMCC9480]
          Length = 157

 Score = 38.9 bits (89), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 24/61 (39%), Positives = 33/61 (54%)

Query: 96  SFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSR 155
             S+L  I  +IL  G  EL     +P +VII+E V +A  F   D  K++N VLDK + 
Sbjct: 85  PLSQLSPIEHAILLIGAYELKNHIEIPYKVIINESVELAKSFGGIDGHKYVNGVLDKFAA 144

Query: 156 K 156
           K
Sbjct: 145 K 145


>gi|330443798|ref|YP_004376784.1| hypothetical protein G5S_0047 [Chlamydophila pecorum E58]
 gi|328806908|gb|AEB41081.1| conserved hypothetical protein [Chlamydophila pecorum E58]
          Length = 154

 Score = 38.9 bits (89), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 22/80 (27%), Positives = 43/80 (53%), Gaps = 1/80 (1%)

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
           V+++   +D LIS  + +  SF  L+++  +ILR  + E +    +P  ++I+E   +  
Sbjct: 57  VLEKSSELDALISQTV-KTTSFENLNLMEKNILRLTLFEYLYGGPIPSSILIAEASRLIK 115

Query: 136 DFFYGDEPKFINAVLDKVSR 155
            F Y +   F+ AVL+ + R
Sbjct: 116 KFSYLEARAFVQAVLNDIFR 135


>gi|294791859|ref|ZP_06757007.1| transcription antitermination factor NusB [Veillonella sp. 6_1_27]
 gi|294457089|gb|EFG25451.1| transcription antitermination factor NusB [Veillonella sp. 6_1_27]
          Length = 134

 Score = 38.9 bits (89), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 29/106 (27%), Positives = 51/106 (48%), Gaps = 4/106 (3%)

Query: 52  DTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISS-CLTEKWSFSRLDMILCSILRA 110
           D +    +++  +D  +   II GV+   + ID  +   C + K   + LD +  SILR 
Sbjct: 29  DVQFPEGNIHKAMDKAYANSIIEGVLSNVEAIDATLQPFCKSRK--VANLDKVDRSILRI 86

Query: 111 GVLELI-ECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSR 155
            V E+  +   +   + I+E + +A DF      K INA+LD  ++
Sbjct: 87  AVWEMTNKVEPLEPSIAINEAIQLAKDFGSDASYKLINAILDAYNK 132


>gi|291531066|emb|CBK96651.1| transcription antitermination factor NusB [Eubacterium siraeum
           70/3]
          Length = 143

 Score = 38.9 bits (89), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 34/132 (25%), Positives = 64/132 (48%), Gaps = 14/132 (10%)

Query: 20  RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79
           R AA+  L+Q+ +   +  EI+   E  +   + E + +SV L          + GV + 
Sbjct: 12  REAALLILFQMKLNPETLDEIL---EDCKESFEMEYNSQSVKL----------VKGVAEH 58

Query: 80  KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139
           +  ++ +I S  +      R+  I  +I+R  + E+  C SVP +V I+E +  A ++  
Sbjct: 59  EDELNGIIES-YSPSRKLDRISYINLAIMRIALYEMKYCPSVPDKVAINEAIEFAKEYAD 117

Query: 140 GDEPKFINAVLD 151
             + +FIN VL+
Sbjct: 118 KTDVRFINGVLN 129


>gi|258592639|emb|CBE68948.1| Sun protein [NC10 bacterium 'Dutch sediment']
          Length = 467

 Score = 38.9 bits (89), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 22/86 (25%), Positives = 43/86 (50%), Gaps = 6/86 (6%)

Query: 72  IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
           + +GV+  +  +D L+++     W   R+D  L  +LR G  +++    VP    ++E V
Sbjct: 60  LTYGVLRWQGRLDYLLAAVTDRPWD--RVDPALRRLLRLGAYQILFLTRVPAYAAVNETV 117

Query: 132 CIAHDFFYGD-EP---KFINAVLDKV 153
            +A D      +P    F+NA+L ++
Sbjct: 118 ALAQDVMRSQLKPVAKAFVNAILRRL 143


>gi|51892487|ref|YP_075178.1| hypothetical protein STH1349 [Symbiobacterium thermophilum IAM
           14863]
 gi|51856176|dbj|BAD40334.1| conserved hypothetical protein [Symbiobacterium thermophilum IAM
           14863]
          Length = 459

 Score = 38.9 bits (89), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 30/138 (21%), Positives = 58/138 (42%), Gaps = 13/138 (9%)

Query: 19  ARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMD 78
            R AA++ALY +DI        +  +      + ++LD     L  +L       +GV  
Sbjct: 12  GREAALRALYDVDIKAAYANLALDHH-----LSRSQLDGRERALATEL------AYGVTR 60

Query: 79  RKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFF 138
           R+  +D  I           ++D  + +ILR    +++    +P    + + V +A  + 
Sbjct: 61  RRATLDWAIGQVAAR--PLEKMDPWVRNILREAAYQILYMDRIPPAAAVDQAVELARQYG 118

Query: 139 YGDEPKFINAVLDKVSRK 156
           +    KF+N VL  + R+
Sbjct: 119 HEGVAKFVNGVLRNLIRR 136


>gi|332981364|ref|YP_004462805.1| NusB antitermination factor [Mahella australiensis 50-1 BON]
 gi|332699042|gb|AEE95983.1| NusB antitermination factor [Mahella australiensis 50-1 BON]
          Length = 134

 Score = 38.5 bits (88), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 41/138 (29%), Positives = 64/138 (46%), Gaps = 19/138 (13%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           R  AR  AV  +Y+ID+    + +I+      RF     L+        D ++   I+  
Sbjct: 3   RRQARQDAVCLMYEIDMQDGDSDDILE-----RFFNTHALN------EADAKYIDEIVKL 51

Query: 76  VMDRKQHIDLLI-SSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134
            ++ +  ID  I  SC  +    +++D+   +ILR    E++   SVP  V I E V +A
Sbjct: 52  ALEHRDDIDRGIEQSCGRKIEYLAKMDL---AILRIAAAEMLYMPSVPHRVSIDEAVELA 108

Query: 135 HDFFYGDE--PKFINAVL 150
               YGD+  P FIN VL
Sbjct: 109 K--RYGDDMSPTFINGVL 124


>gi|283783379|ref|YP_003374133.1| transcription antitermination factor NusB [Gardnerella vaginalis
           409-05]
 gi|298252678|ref|ZP_06976472.1| transcription termination factor [Gardnerella vaginalis 5-1]
 gi|283441142|gb|ADB13608.1| transcription antitermination factor NusB [Gardnerella vaginalis
           409-05]
 gi|297533042|gb|EFH71926.1| transcription termination factor [Gardnerella vaginalis 5-1]
          Length = 160

 Score = 38.5 bits (88), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 35/138 (25%), Positives = 59/138 (42%), Gaps = 12/138 (8%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           R  AR  A+  LY+ D        ++ E       A T L           E+   I+ G
Sbjct: 3   RSTARKRALNTLYEADEKNQHILSLLEE-RVKEPGAQTPLP----------EYAVEIVRG 51

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
           V +R+  ID  ++   T  W   R+ +I  +ILR  V E++    +P +V I E + +A 
Sbjct: 52  VGERRNRIDKTLNRYST-GWKVGRMAVIDRNILRIAVWEMLLNDEIPDKVAIDEAIALAK 110

Query: 136 DFFYGDEPKFINAVLDKV 153
            +   +   FI+ +L  +
Sbjct: 111 MYSDDEAIAFIHGLLSAI 128


>gi|121533700|ref|ZP_01665527.1| sun protein [Thermosinus carboxydivorans Nor1]
 gi|121307691|gb|EAX48606.1| sun protein [Thermosinus carboxydivorans Nor1]
          Length = 442

 Score = 38.5 bits (88), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 28/140 (20%), Positives = 61/140 (43%), Gaps = 13/140 (9%)

Query: 19  ARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMD 78
           AR  A++ + ++DI G      +++  + R   D            D  +   +++G + 
Sbjct: 3   AREVALKVINRVDIDGAYANIALAQEMSQRDLTDR-----------DRRFITELVYGTVK 51

Query: 79  RKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFF 138
               +D ++S   +      ++  ++ +ILR G+ ++     +PV    +E V +A  + 
Sbjct: 52  AGATLDWILSHYSSR--PLDKIHPVIRNILRMGIYQIFFLSRIPVSAACNEAVKLAQKYG 109

Query: 139 YGDEPKFINAVLDKVSRKEE 158
           +    KF+NAVL    R  +
Sbjct: 110 HAGTVKFVNAVLRSAGRSPD 129


>gi|291545446|emb|CBL18554.1| transcription antitermination factor NusB [Ruminococcus sp. SR1/5]
          Length = 158

 Score = 38.5 bits (88), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 25/90 (27%), Positives = 41/90 (45%), Gaps = 1/90 (1%)

Query: 65  DLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVE 124
           D E+ +     V +  + ID  ++S  +  W   R+  +  + LR  V E+     VP  
Sbjct: 43  DQEYMKKKYAHVKEHLEEIDAQLNSA-SRGWKTKRMSRVDLAALRLAVYEMEYDADVPTG 101

Query: 125 VIISEYVCIAHDFFYGDEPKFINAVLDKVS 154
           V I+E V +A  F       F+N VL K++
Sbjct: 102 VAINEAVELAKRFGGDASGSFVNGVLGKIA 131


>gi|303258269|ref|ZP_07344276.1| transcription antitermination factor NusB [Burkholderiales
           bacterium 1_1_47]
 gi|302859022|gb|EFL82106.1| transcription antitermination factor NusB [Burkholderiales
           bacterium 1_1_47]
          Length = 188

 Score = 38.5 bits (88), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 30/98 (30%), Positives = 45/98 (45%), Gaps = 19/98 (19%)

Query: 64  VDLEWFRVIIHGVMDR--------KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLEL 115
            D  ++R ++HGV +           HID  ++S          L  I  +IL  G  EL
Sbjct: 87  ADQAFYRELLHGVTEEFPSLETSYAPHIDREVTS----------LSPIERAILLIGTYEL 136

Query: 116 IECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKV 153
               + P  V+I+E V +A  F   D  K++N VLDK+
Sbjct: 137 KNT-TTPYRVVINEAVELAKSFGGSDGFKYVNGVLDKM 173


>gi|297243390|ref|ZP_06927323.1| transcription termination factor [Gardnerella vaginalis AMD]
 gi|296888637|gb|EFH27376.1| transcription termination factor [Gardnerella vaginalis AMD]
          Length = 160

 Score = 38.5 bits (88), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 23/82 (28%), Positives = 42/82 (51%), Gaps = 1/82 (1%)

Query: 72  IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
           I+ GV +R+  ID  ++   T  W   R+ +I  +ILR  V E++    +P +V I E +
Sbjct: 48  IVRGVGERRNRIDKTLNRYST-GWKVGRMAVIDRNILRIAVWEMLLNDEIPDKVAIDEAI 106

Query: 132 CIAHDFFYGDEPKFINAVLDKV 153
            +A  +   +   FI+ +L  +
Sbjct: 107 ALAKMYSDDEAIAFIHGLLSAI 128


>gi|186680628|ref|YP_001863824.1| transcription antitermination protein NusB [Nostoc punctiforme PCC
           73102]
 gi|238689253|sp|B2J3F1|NUSB_NOSP7 RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|186463080|gb|ACC78881.1| NusB antitermination factor [Nostoc punctiforme PCC 73102]
          Length = 213

 Score = 38.5 bits (88), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 26/92 (28%), Positives = 50/92 (54%), Gaps = 2/92 (2%)

Query: 67  EWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVI 126
            + + ++  V + +  ID L+S+ L + W  +RL  +   IL+  V E+ +   VP  + 
Sbjct: 122 NYAKELVITVNENRHIIDELLSTALVD-WQVTRLAQLDRDILQIAVAEM-KFLGVPDSIA 179

Query: 127 ISEYVCIAHDFFYGDEPKFINAVLDKVSRKEE 158
           I+E V +A  +   D  +FIN VL +V+ +++
Sbjct: 180 INEAVELAKRYSGDDGHRFINGVLRRVTEQKK 211


>gi|291515762|emb|CBK64972.1| Transcription termination factor [Alistipes shahii WAL 8301]
          Length = 311

 Score = 38.5 bits (88), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 23/77 (29%), Positives = 38/77 (49%), Gaps = 4/77 (5%)

Query: 91  LTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVL 150
            T  W   R+  +   I+   + EL    SVPV+V + E++ I+  +       FIN VL
Sbjct: 231 FTANWDVERIVFMDNLIIGTAMAELTSFPSVPVKVTLDEWIEISKYYSTPGSSTFINGVL 290

Query: 151 DKV----SRKEEIKRSG 163
           DK+    + +  IK++G
Sbjct: 291 DKIVESLTAEGRIKKAG 307


>gi|82621723|gb|ABB86539.1| NusB [uncultured Bacteroidetes bacterium 'SBI2-18 P41A3']
          Length = 325

 Score = 38.5 bits (88), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 25/87 (28%), Positives = 47/87 (54%), Gaps = 1/87 (1%)

Query: 72  IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
           +I  V++ K+ +   IS   T  W   R+  I   +L+  + E +   S+P++V I+EY+
Sbjct: 215 LIKYVIENKEMLQDEISKV-TPNWDNERIAQIDLILLQMCLSEFLFFKSIPLKVSINEYL 273

Query: 132 CIAHDFFYGDEPKFINAVLDKVSRKEE 158
            IA ++       FIN ++D +S++ E
Sbjct: 274 EIAKEYSSDKSNIFINGIMDSLSKQFE 300


>gi|289578506|ref|YP_003477133.1| sun protein [Thermoanaerobacter italicus Ab9]
 gi|289528219|gb|ADD02571.1| sun protein [Thermoanaerobacter italicus Ab9]
          Length = 444

 Score = 38.5 bits (88), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 27/95 (28%), Positives = 46/95 (48%), Gaps = 5/95 (5%)

Query: 64  VDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPV 123
           VD ++ + ++ GV++RK  +D ++S  + +       D      L  G+ +L+    VP 
Sbjct: 37  VDRDFIKKLVFGVIERKYTLDFILSFFVKKPA-----DEKSKIFLEMGLYQLLYMDKVPS 91

Query: 124 EVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEE 158
              I+E V IA +        FINAVL    R++E
Sbjct: 92  YAAINETVNIAKNVLGIKRANFINAVLRSYEREKE 126


>gi|160892144|ref|ZP_02073147.1| hypothetical protein BACUNI_04607 [Bacteroides uniformis ATCC 8492]
 gi|270296236|ref|ZP_06202436.1| conserved hypothetical protein [Bacteroides sp. D20]
 gi|317480857|ref|ZP_07939938.1| transcription antitermination factor NusB [Bacteroides sp. 4_1_36]
 gi|156858622|gb|EDO52053.1| hypothetical protein BACUNI_04607 [Bacteroides uniformis ATCC 8492]
 gi|270273640|gb|EFA19502.1| conserved hypothetical protein [Bacteroides sp. D20]
 gi|316902942|gb|EFV24815.1| transcription antitermination factor NusB [Bacteroides sp. 4_1_36]
          Length = 308

 Score = 38.5 bits (88), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 19/75 (25%), Positives = 38/75 (50%), Gaps = 2/75 (2%)

Query: 92  TEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLD 151
           T  W   R+  +   I++  + E++   ++PV V ++EYV IA  +       F+N  LD
Sbjct: 234 TRNWDLDRVAFMDVVIMQCALAEILSFPNIPVSVSLNEYVDIAKVYSTAKSGSFVNGTLD 293

Query: 152 KVSRKEEIKRSGCVS 166
            +    ++K+ G ++
Sbjct: 294 GIVN--QLKKEGKLT 306


>gi|84496669|ref|ZP_00995523.1| NusB antitermination factor [Janibacter sp. HTCC2649]
 gi|84383437|gb|EAP99318.1| NusB antitermination factor [Janibacter sp. HTCC2649]
          Length = 136

 Score = 38.5 bits (88), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 27/83 (32%), Positives = 48/83 (57%), Gaps = 2/83 (2%)

Query: 72  IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
           ++ GV+D    I+ L+++  ++ WS  R+  +  +ILR G  E++    VP  V I+E V
Sbjct: 49  LVTGVVDNWSQINDLLATY-SQGWSVERMPAVDRAILRVGAFEVL-FGEVPEGVAIAEAV 106

Query: 132 CIAHDFFYGDEPKFINAVLDKVS 154
            IA +    D PKF+N +L +++
Sbjct: 107 AIATELSTDDSPKFVNGLLARLA 129


>gi|18310723|ref|NP_562657.1| RNA-binding Sun protein [Clostridium perfringens str. 13]
 gi|18145404|dbj|BAB81447.1| probable RNA-binding Sun protein [Clostridium perfringens str. 13]
          Length = 442

 Score = 38.5 bits (88), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 25/89 (28%), Positives = 47/89 (52%), Gaps = 10/89 (11%)

Query: 72  IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
           +++G +  K+ ID+++SS + +     ++D  + +ILR+ + ++     VP   I++E V
Sbjct: 45  VVYGTIKYKKMIDIILSSFVAD---IGKIDESVVNILRSAIYQMKFLDRVPPYAIVNEAV 101

Query: 132 CIAHDFFYGDEP---KFINAVLDKVSRKE 157
            +  +     EP   KFIN VL    R E
Sbjct: 102 NLTKE----TEPNLAKFINGVLRNYLRNE 126


>gi|306818731|ref|ZP_07452453.1| possible transcription antitermination protein NusB [Mobiluncus
           mulieris ATCC 35239]
 gi|304648417|gb|EFM45720.1| possible transcription antitermination protein NusB [Mobiluncus
           mulieris ATCC 35239]
          Length = 182

 Score = 38.5 bits (88), Expect = 0.34,   Method: Compositional matrix adjust.
 Identities = 22/91 (24%), Positives = 45/91 (49%), Gaps = 1/91 (1%)

Query: 68  WFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVII 127
           + R I+ G+ +  + ID  +++  +  WS  R+  +  +I+R    E++    V   V I
Sbjct: 38  YAREILEGIAEHLERIDAALATY-SRAWSLHRMPEVDLAIMRVATWEILFNPDVDGPVAI 96

Query: 128 SEYVCIAHDFFYGDEPKFINAVLDKVSRKEE 158
           +  + +A +    + PKFIN +L  ++   E
Sbjct: 97  TAAMQLAAERSTDESPKFINGLLGTINDMRE 127


>gi|319901555|ref|YP_004161283.1| NusB antitermination factor [Bacteroides helcogenes P 36-108]
 gi|319416586|gb|ADV43697.1| NusB antitermination factor [Bacteroides helcogenes P 36-108]
          Length = 308

 Score = 38.5 bits (88), Expect = 0.35,   Method: Compositional matrix adjust.
 Identities = 19/75 (25%), Positives = 38/75 (50%), Gaps = 2/75 (2%)

Query: 92  TEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLD 151
           T  W   R+  +   I++  + E++   ++PV V ++EYV IA  +       F+N  LD
Sbjct: 234 TRNWDLDRVAFMDVIIMQCALAEILSFPNIPVSVSLNEYVDIAKVYSTAKSGSFVNGTLD 293

Query: 152 KVSRKEEIKRSGCVS 166
            +    ++K+ G ++
Sbjct: 294 GIVN--QLKKEGKLT 306


>gi|313885233|ref|ZP_07818985.1| ribosomal RNA small subunit methyltransferase B [Eremococcus
           coleocola ACS-139-V-Col8]
 gi|312619924|gb|EFR31361.1| ribosomal RNA small subunit methyltransferase B [Eremococcus
           coleocola ACS-139-V-Col8]
          Length = 456

 Score = 38.5 bits (88), Expect = 0.36,   Method: Compositional matrix adjust.
 Identities = 32/148 (21%), Positives = 67/148 (45%), Gaps = 14/148 (9%)

Query: 15  RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELD---VESVYLHVDLEWFRV 71
           ++ +AR  A QA +Q  +I       + + E +   ++  LD    E+    VD      
Sbjct: 4   KKNVARKLADQARFQALLI-------LDQVENHGGYSNVLLDRFHQETSLSPVDTNLVVK 56

Query: 72  IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
           +++GV+ R+  +D  ++  +  K    ++D  + S+LR  + + I    +P   + S+ V
Sbjct: 57  LVYGVIQRRYSLDYFLAPFIKGK----KVDDWVASLLRLSIYQFIYLDRIPDHAVFSQAV 112

Query: 132 CIAHDFFYGDEPKFINAVLDKVSRKEEI 159
            +A    +     F+N VL    R+ ++
Sbjct: 113 EMAKLIGHAGLGGFVNGVLRNFQRRADL 140


>gi|293400615|ref|ZP_06644760.1| transcription antitermination factor NusB [Erysipelotrichaceae
           bacterium 5_2_54FAA]
 gi|291305641|gb|EFE46885.1| transcription antitermination factor NusB [Erysipelotrichaceae
           bacterium 5_2_54FAA]
          Length = 126

 Score = 38.5 bits (88), Expect = 0.36,   Method: Compositional matrix adjust.
 Identities = 26/91 (28%), Positives = 45/91 (49%), Gaps = 2/91 (2%)

Query: 63  HVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVP 122
            +D   + V I  +   + +I + I+  L E W+F RL  +  +IL     EL +    P
Sbjct: 38  EIDPFLYTVTIDAIKYEEDYIQM-INEALREDWTFERLGYVEKAILIMAACEL-DMEIAP 95

Query: 123 VEVIISEYVCIAHDFFYGDEPKFINAVLDKV 153
             ++I+E V +A  +   +  K IN VLD++
Sbjct: 96  KPIVINEAVTLAKKYCDEETYKLINGVLDRL 126


>gi|187927756|ref|YP_001898243.1| transcription antitermination protein NusB [Ralstonia pickettii
           12J]
 gi|238691779|sp|B2U7E9|NUSB_RALPJ RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|187724646|gb|ACD25811.1| NusB antitermination factor [Ralstonia pickettii 12J]
          Length = 155

 Score = 38.1 bits (87), Expect = 0.38,   Method: Compositional matrix adjust.
 Identities = 23/91 (25%), Positives = 43/91 (47%), Gaps = 2/91 (2%)

Query: 64  VDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPV 123
            D   F  ++HG +  +  +    +  L      + L  +  + L  G  EL+ C  +P 
Sbjct: 55  ADRAHFDALLHGAIREETTLTEAFTPYLDR--PVAELSPVERAALLVGAYELVHCVDIPY 112

Query: 124 EVIISEYVCIAHDFFYGDEPKFINAVLDKVS 154
           +V+I+E V +   F   +  K++N VLDK++
Sbjct: 113 KVVINEAVELTKTFGGVEGYKYVNGVLDKLA 143


>gi|291459867|ref|ZP_06599257.1| n utilization substance protein B [Oribacterium sp. oral taxon 078
           str. F0262]
 gi|291417657|gb|EFE91376.1| n utilization substance protein B [Oribacterium sp. oral taxon 078
           str. F0262]
          Length = 264

 Score = 38.1 bits (87), Expect = 0.38,   Method: Compositional matrix adjust.
 Identities = 21/79 (26%), Positives = 41/79 (51%), Gaps = 1/79 (1%)

Query: 75  GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134
           G++ R + +D  I+    E W+  R+     ++LR  + E++    +P +V I+E V IA
Sbjct: 150 GMVGRIEELDRRINEA-AEGWTTKRMSRTDLTVLRLALYEILFRDEIPDKVSINEAVDIA 208

Query: 135 HDFFYGDEPKFINAVLDKV 153
             +   +   F+N VL ++
Sbjct: 209 KKYGGAESGSFVNGVLARL 227


>gi|282899369|ref|ZP_06307337.1| NusB antitermination factor [Cylindrospermopsis raciborskii CS-505]
 gi|281195736|gb|EFA70665.1| NusB antitermination factor [Cylindrospermopsis raciborskii CS-505]
          Length = 213

 Score = 38.1 bits (87), Expect = 0.38,   Method: Compositional matrix adjust.
 Identities = 27/86 (31%), Positives = 45/86 (52%), Gaps = 2/86 (2%)

Query: 68  WFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVII 127
           + + I+  V + +  +D +IS  L + W  +RL  I   IL+  V E+ +   VP  + I
Sbjct: 123 YAKEIVVTVDENRPILDQIISQALVD-WQVTRLAQIDRDILQIAVAEM-KFMEVPPSIAI 180

Query: 128 SEYVCIAHDFFYGDEPKFINAVLDKV 153
           +E V +A  +   D  +FIN VL +V
Sbjct: 181 NEAVELAKRYSGDDGHRFINGVLRRV 206


>gi|269977328|ref|ZP_06184301.1| putative N utilization substance B-like protein [Mobiluncus
           mulieris 28-1]
 gi|269934631|gb|EEZ91192.1| putative N utilization substance B-like protein [Mobiluncus
           mulieris 28-1]
          Length = 197

 Score = 38.1 bits (87), Expect = 0.38,   Method: Compositional matrix adjust.
 Identities = 23/91 (25%), Positives = 44/91 (48%), Gaps = 1/91 (1%)

Query: 68  WFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVII 127
           + R I+ GV +    ID  +++  +  WS  R+  +  +I+R    E++    V   V I
Sbjct: 53  YAREILEGVAEHLDRIDAALAT-YSRAWSLHRMPEVDLAIMRVATWEILFNPDVDGPVAI 111

Query: 128 SEYVCIAHDFFYGDEPKFINAVLDKVSRKEE 158
           +  + +A +    + PKFIN +L  ++   E
Sbjct: 112 TAAMQLAAERSTDESPKFINGLLGTINDMRE 142


>gi|309780817|ref|ZP_07675558.1| transcription antitermination factor NusB [Ralstonia sp. 5_7_47FAA]
 gi|308920499|gb|EFP66155.1| transcription antitermination factor NusB [Ralstonia sp. 5_7_47FAA]
          Length = 155

 Score = 38.1 bits (87), Expect = 0.39,   Method: Compositional matrix adjust.
 Identities = 23/91 (25%), Positives = 43/91 (47%), Gaps = 2/91 (2%)

Query: 64  VDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPV 123
            D   F  ++HG +  +  +    +  L      + L  +  + L  G  EL+ C  +P 
Sbjct: 55  ADRAHFDALLHGAIREETTLTEAFTPYLDR--PVAELSPVERAALLVGAYELVHCVDIPY 112

Query: 124 EVIISEYVCIAHDFFYGDEPKFINAVLDKVS 154
           +V+I+E V +   F   +  K++N VLDK++
Sbjct: 113 KVVINEAVELTKTFGGVEGYKYVNGVLDKLA 143


>gi|254468502|ref|ZP_05081908.1| transcription antitermination factor NusB [beta proteobacterium
           KB13]
 gi|207087312|gb|EDZ64595.1| transcription antitermination factor NusB [beta proteobacterium
           KB13]
          Length = 127

 Score = 38.1 bits (87), Expect = 0.39,   Method: Compositional matrix adjust.
 Identities = 28/96 (29%), Positives = 47/96 (48%), Gaps = 2/96 (2%)

Query: 61  YLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHS 120
           Y   D E++  +I G+ +  Q I   + + + +K     L+ I  SIL     EL     
Sbjct: 27  YCRCDEEFYNSLIDGIKENYQEILEDLDNFMDKKKE--ELNPIELSILVVAYYELKTRVD 84

Query: 121 VPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRK 156
           +P +V I+E + I   F   +  KF+N  LD+V++K
Sbjct: 85  IPFKVSINEALEITKSFGGQESFKFVNGSLDRVAKK 120


>gi|152993501|ref|YP_001359222.1| transcription antitermination protein NusB [Sulfurovum sp. NBC37-1]
 gi|166215724|sp|A6QBK6|NUSB_SULNB RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|151425362|dbj|BAF72865.1| transcription antitermination factor NusB [Sulfurovum sp. NBC37-1]
          Length = 130

 Score = 38.1 bits (87), Expect = 0.39,   Method: Compositional matrix adjust.
 Identities = 23/84 (27%), Positives = 41/84 (48%), Gaps = 2/84 (2%)

Query: 72  IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
           +  G ++  + +D  I   LT+ W +  +  +  +ILR G  E++        +II+E V
Sbjct: 49  LFDGTIENLEMLDAEIEKHLTD-WDYDAIGRVEKAILRLGAYEIL-VAKTDRAIIINEAV 106

Query: 132 CIAHDFFYGDEPKFINAVLDKVSR 155
            +A        P+FIN VLD + +
Sbjct: 107 ELAKSLADEKSPQFINGVLDAIGK 130


>gi|258647540|ref|ZP_05735009.1| NusB family protein [Prevotella tannerae ATCC 51259]
 gi|260852324|gb|EEX72193.1| NusB family protein [Prevotella tannerae ATCC 51259]
          Length = 309

 Score = 38.1 bits (87), Expect = 0.41,   Method: Compositional matrix adjust.
 Identities = 32/115 (27%), Positives = 54/115 (46%), Gaps = 17/115 (14%)

Query: 39  EIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFS 98
           EI+ EY       DTE D +       LE F+  I    +R   +  LI +  ++ W F 
Sbjct: 200 EILPEY-------DTEDDHQFA-----LELFQTTI----ERGDEMRDLIRNN-SKNWEFG 242

Query: 99  RLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKV 153
           RL  +   I++  + E++   ++P+ V  +EY+ IA  +       +IN +LD V
Sbjct: 243 RLAFMDVIIMQIALTEMLTFPTIPLNVTFNEYLDIAKIYSTPRSSSYINGLLDHV 297


>gi|297537700|ref|YP_003673469.1| NusB antitermination factor [Methylotenera sp. 301]
 gi|297257047|gb|ADI28892.1| NusB antitermination factor [Methylotenera sp. 301]
          Length = 175

 Score = 38.1 bits (87), Expect = 0.41,   Method: Compositional matrix adjust.
 Identities = 27/94 (28%), Positives = 49/94 (52%), Gaps = 2/94 (2%)

Query: 61  YLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHS 120
           Y   D  +F+ ++  V +    +D  +++ +  +   S L  I  +IL+    EL+   S
Sbjct: 71  YAKADEAYFKQLLEAVGEHATELDEKMAAFIDRQ--VSELSPIEHAILQISGCELMFDMS 128

Query: 121 VPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVS 154
           +P  V+I+E V +A  +   D  K+IN VLDK++
Sbjct: 129 IPYRVVINEGVELAKIYGGIDGHKYINGVLDKLA 162


>gi|149920268|ref|ZP_01908739.1| hypothetical protein PPSIR1_08951 [Plesiocystis pacifica SIR-1]
 gi|149818855|gb|EDM78295.1| hypothetical protein PPSIR1_08951 [Plesiocystis pacifica SIR-1]
          Length = 169

 Score = 38.1 bits (87), Expect = 0.41,   Method: Compositional matrix adjust.
 Identities = 19/80 (23%), Positives = 37/80 (46%), Gaps = 2/80 (2%)

Query: 68  WFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVII 127
           W R +    ++    +D  I +  +E+W   R+D +  ++LR   +EL      P  V++
Sbjct: 72  WARRLTEAYLEDAAAVDQAIGAA-SERWRIERMDRVDRNVLRLAAVEL-RTQKTPRNVVV 129

Query: 128 SEYVCIAHDFFYGDEPKFIN 147
           +E V +A  +       F+N
Sbjct: 130 AEAVRLAARYGSERSAAFVN 149


>gi|312129526|ref|YP_003996866.1| nusb antitermination factor [Leadbetterella byssophila DSM 17132]
 gi|311906072|gb|ADQ16513.1| NusB antitermination factor [Leadbetterella byssophila DSM 17132]
          Length = 371

 Score = 38.1 bits (87), Expect = 0.42,   Method: Compositional matrix adjust.
 Identities = 26/78 (33%), Positives = 41/78 (52%), Gaps = 10/78 (12%)

Query: 93  EKWSFSRL---DMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAV 149
           + W   R+   D+IL   L+  V EL    S+PV+V I+E + IA ++       FIN +
Sbjct: 290 KNWDLERIIGTDLIL---LKMAVAELTTFPSIPVKVTINEIIEIAKNYSSEKSKVFINGL 346

Query: 150 LDKV----SRKEEIKRSG 163
           LD +     +K  IK++G
Sbjct: 347 LDSICKDLQQKGLIKKTG 364


>gi|227875419|ref|ZP_03993560.1| possible transcription antitermination protein NusB [Mobiluncus
           mulieris ATCC 35243]
 gi|227843973|gb|EEJ54141.1| possible transcription antitermination protein NusB [Mobiluncus
           mulieris ATCC 35243]
          Length = 182

 Score = 38.1 bits (87), Expect = 0.43,   Method: Compositional matrix adjust.
 Identities = 23/91 (25%), Positives = 44/91 (48%), Gaps = 1/91 (1%)

Query: 68  WFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVII 127
           + R I+ GV +    ID  +++  +  WS  R+  +  +I+R    E++    V   V I
Sbjct: 38  YAREILEGVAEHLDRIDAALATY-SRAWSLHRMPEVDLAIMRVATWEILFNPDVDGPVAI 96

Query: 128 SEYVCIAHDFFYGDEPKFINAVLDKVSRKEE 158
           +  + +A +    + PKFIN +L  ++   E
Sbjct: 97  TAAMQLAAERSTDESPKFINGLLGTINDMRE 127


>gi|167040389|ref|YP_001663374.1| sun protein [Thermoanaerobacter sp. X514]
 gi|256752273|ref|ZP_05493136.1| sun protein [Thermoanaerobacter ethanolicus CCSD1]
 gi|300914473|ref|ZP_07131789.1| sun protein [Thermoanaerobacter sp. X561]
 gi|307724291|ref|YP_003904042.1| sun protein [Thermoanaerobacter sp. X513]
 gi|166854629|gb|ABY93038.1| sun protein [Thermoanaerobacter sp. X514]
 gi|256748841|gb|EEU61882.1| sun protein [Thermoanaerobacter ethanolicus CCSD1]
 gi|300889408|gb|EFK84554.1| sun protein [Thermoanaerobacter sp. X561]
 gi|307581352|gb|ADN54751.1| sun protein [Thermoanaerobacter sp. X513]
          Length = 444

 Score = 38.1 bits (87), Expect = 0.45,   Method: Compositional matrix adjust.
 Identities = 26/95 (27%), Positives = 45/95 (47%), Gaps = 5/95 (5%)

Query: 64  VDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPV 123
           +D  + + ++ GV++RK  +D ++S  + +       D+     L  G+ +L+    VP 
Sbjct: 37  IDRGFTKELVFGVIERKYTLDFILSFFVNKAP-----DLKTMIFLEMGLYQLLYMDKVPS 91

Query: 124 EVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEE 158
              I+E V IA          FINAVL    R++E
Sbjct: 92  YAAINETVNIAKKVLGIKRANFINAVLRNYDREKE 126


>gi|168207268|ref|ZP_02633273.1| ribosomal RNA small subunit methyltransferase B [Clostridium
           perfringens E str. JGS1987]
 gi|169342659|ref|ZP_02629420.2| ribosomal RNA small subunit methyltransferase B [Clostridium
           perfringens C str. JGS1495]
 gi|169299165|gb|EDS81235.1| ribosomal RNA small subunit methyltransferase B [Clostridium
           perfringens C str. JGS1495]
 gi|170661376|gb|EDT14059.1| ribosomal RNA small subunit methyltransferase B [Clostridium
           perfringens E str. JGS1987]
          Length = 442

 Score = 38.1 bits (87), Expect = 0.45,   Method: Compositional matrix adjust.
 Identities = 24/89 (26%), Positives = 47/89 (52%), Gaps = 10/89 (11%)

Query: 72  IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
           +++G +  K+ ID+++SS + +     ++D  + +ILR+ + ++     VP   I++E V
Sbjct: 45  VVYGTIKYKKMIDIILSSFVAD---IGKIDESVVNILRSAIYQMKFLDRVPPYAIVNEAV 101

Query: 132 CIAHDFFYGDEP---KFINAVLDKVSRKE 157
            +  +     EP   KF+N VL    R E
Sbjct: 102 NLTKE----TEPNLAKFVNGVLRNYLRNE 126


>gi|298346844|ref|YP_003719531.1| putative transcription antitermination protein NusB [Mobiluncus
           curtisii ATCC 43063]
 gi|298236905|gb|ADI68037.1| possible transcription antitermination protein NusB [Mobiluncus
           curtisii ATCC 43063]
          Length = 174

 Score = 38.1 bits (87), Expect = 0.46,   Method: Compositional matrix adjust.
 Identities = 32/130 (24%), Positives = 56/130 (43%), Gaps = 14/130 (10%)

Query: 27  LYQIDIIGCSTTEII---SEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHI 83
           LY+  + G  T E I   S+       A T L   +V           I+ GV +  + I
Sbjct: 2   LYEAHVRGWDTPEGIFSLSQLRQDETTAQTPLPAYAVE----------ILEGVAEHLERI 51

Query: 84  DLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEP 143
           D  +++  ++ W   R+  +  +I+R    E++    V   V I+  + IA +    + P
Sbjct: 52  DAALATY-SKAWPLHRMPEVDLAIMRVAAWEILFNPDVTGPVAITAAMQIAEERSTDESP 110

Query: 144 KFINAVLDKV 153
           KFIN +L  +
Sbjct: 111 KFINGLLGAI 120


>gi|313888508|ref|ZP_07822175.1| ribosomal RNA small subunit methyltransferase B [Peptoniphilus
           harei ACS-146-V-Sch2b]
 gi|312845537|gb|EFR32931.1| ribosomal RNA small subunit methyltransferase B [Peptoniphilus
           harei ACS-146-V-Sch2b]
          Length = 430

 Score = 38.1 bits (87), Expect = 0.46,   Method: Compositional matrix adjust.
 Identities = 26/98 (26%), Positives = 49/98 (50%), Gaps = 6/98 (6%)

Query: 65  DLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVE 124
           D  + + I  GV+  K ++D +I      K  F+R+  I+ SIL   + ++     VP  
Sbjct: 38  DFAFIKEITTGVVRNKTYLDYVIRE--NSKVRFNRIHKIILSILEMAIYQMYFLDKVPDY 95

Query: 125 VIISEYVCIAHDFFYGDEP--KFINAVLDKVSRKEEIK 160
            I+ E V +A    YG++    F N +L  +S+++ ++
Sbjct: 96  SIVDESVNLAK--IYGNKGSISFTNGILRSISKEKHLQ 131


>gi|160893229|ref|ZP_02074017.1| hypothetical protein CLOL250_00775 [Clostridium sp. L2-50]
 gi|156865312|gb|EDO58743.1| hypothetical protein CLOL250_00775 [Clostridium sp. L2-50]
          Length = 144

 Score = 38.1 bits (87), Expect = 0.47,   Method: Compositional matrix adjust.
 Identities = 25/82 (30%), Positives = 42/82 (51%), Gaps = 1/82 (1%)

Query: 73  IHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVC 132
           +  V+     ID  IS  +++ W   R+     +ILR  V E+     +PV+V I+E V 
Sbjct: 63  VEAVVSHITEIDETISG-ISQGWKLGRIGKAELAILRLAVYEIKFDEDIPVKVAINEAVE 121

Query: 133 IAHDFFYGDEPKFINAVLDKVS 154
           +A  +   +   FINA+L K++
Sbjct: 122 LAKTYCDVEAKSFINALLAKLA 143


>gi|86143181|ref|ZP_01061583.1| putative N utilization substance protein [Leeuwenhoekiella
           blandensis MED217]
 gi|85830086|gb|EAQ48546.1| putative N utilization substance protein [Leeuwenhoekiella
           blandensis MED217]
          Length = 304

 Score = 38.1 bits (87), Expect = 0.47,   Method: Compositional matrix adjust.
 Identities = 17/65 (26%), Positives = 36/65 (55%)

Query: 92  TEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLD 151
           T  W   R+  +   +++  + E +   S+PV+V I+EY+ ++ ++       F+N VLD
Sbjct: 224 TPNWDQDRIAALDKILIKMALCEFLRFSSIPVKVTINEYLELSKEYSTPKSSIFVNGVLD 283

Query: 152 KVSRK 156
           ++ +K
Sbjct: 284 RLVKK 288


>gi|94311627|ref|YP_584837.1| transcription antitermination protein NusB [Cupriavidus
           metallidurans CH34]
 gi|119390804|sp|Q1LJV8|NUSB_RALME RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|93355479|gb|ABF09568.1| transcription termination factor, N utilization substance protein
           B-like protein(Protein nusB) [Cupriavidus metallidurans
           CH34]
          Length = 171

 Score = 37.7 bits (86), Expect = 0.49,   Method: Compositional matrix adjust.
 Identities = 25/87 (28%), Positives = 44/87 (50%), Gaps = 12/87 (13%)

Query: 80  KQHIDLLISSCLTEKWSFSR-----LDMI---LCSILRAGVL----ELIECHSVPVEVII 127
           ++H D L+   + E+   +      LD     L  + RA +L    EL+ C  +P +V+I
Sbjct: 73  REHFDALLGGAVREEARLTAAFEPFLDRTVDELSPVERAALLVGSYELVHCLDIPYKVVI 132

Query: 128 SEYVCIAHDFFYGDEPKFINAVLDKVS 154
           +E V +   F   +  K++N VLDK++
Sbjct: 133 NEAVELTKTFGGVEGYKYVNGVLDKLA 159


>gi|168210626|ref|ZP_02636251.1| ribosomal RNA small subunit methyltransferase B [Clostridium
           perfringens B str. ATCC 3626]
 gi|168214218|ref|ZP_02639843.1| ribosomal RNA small subunit methyltransferase B [Clostridium
           perfringens CPE str. F4969]
 gi|168217028|ref|ZP_02642653.1| ribosomal RNA small subunit methyltransferase B [Clostridium
           perfringens NCTC 8239]
 gi|182625836|ref|ZP_02953602.1| ribosomal RNA small subunit methyltransferase B [Clostridium
           perfringens D str. JGS1721]
 gi|170711319|gb|EDT23501.1| ribosomal RNA small subunit methyltransferase B [Clostridium
           perfringens B str. ATCC 3626]
 gi|170714316|gb|EDT26498.1| ribosomal RNA small subunit methyltransferase B [Clostridium
           perfringens CPE str. F4969]
 gi|177908870|gb|EDT71362.1| ribosomal RNA small subunit methyltransferase B [Clostridium
           perfringens D str. JGS1721]
 gi|182380885|gb|EDT78364.1| ribosomal RNA small subunit methyltransferase B [Clostridium
           perfringens NCTC 8239]
          Length = 442

 Score = 37.7 bits (86), Expect = 0.50,   Method: Compositional matrix adjust.
 Identities = 24/89 (26%), Positives = 47/89 (52%), Gaps = 10/89 (11%)

Query: 72  IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
           +++G +  K+ ID+++SS + +     ++D  + +ILR+ + ++     VP   I++E V
Sbjct: 45  VVYGTIKYKKMIDIILSSFVAD---IGKIDESVVNILRSAIYQMKFLDRVPPYAIVNEAV 101

Query: 132 CIAHDFFYGDEP---KFINAVLDKVSRKE 157
            +  +     EP   KF+N VL    R E
Sbjct: 102 NLTKE----TEPNLAKFVNGVLRNYLRNE 126


>gi|328881116|emb|CCA54355.1| Ribosomal RNA small subunit methyltransferase B [Streptomyces
           venezuelae ATCC 10712]
          Length = 470

 Score = 37.7 bits (86), Expect = 0.50,   Method: Compositional matrix adjust.
 Identities = 22/86 (25%), Positives = 43/86 (50%), Gaps = 3/86 (3%)

Query: 72  IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
           +++G + R+   D +IS+C+        +D  +  +L  G  +L+    +P    +S  V
Sbjct: 67  LVYGTLRRQGTYDAIISACVDRP--LREVDPPVLDVLALGAHQLLGTR-IPTHAAVSASV 123

Query: 132 CIAHDFFYGDEPKFINAVLDKVSRKE 157
            +A         KF+NAVL K+S+++
Sbjct: 124 ELARVVLGDGRAKFVNAVLRKISQQD 149


>gi|269218525|ref|ZP_06162379.1| B-like utilization substance protein [Actinomyces sp. oral taxon
           848 str. F0332]
 gi|269211636|gb|EEZ77976.1| B-like utilization substance protein [Actinomyces sp. oral taxon
           848 str. F0332]
          Length = 171

 Score = 37.7 bits (86), Expect = 0.51,   Method: Compositional matrix adjust.
 Identities = 22/83 (26%), Positives = 42/83 (50%), Gaps = 2/83 (2%)

Query: 72  IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
           I+    +    ID ++ +  +E W+ SR++ +  SILRA   EL+   +    V I E+ 
Sbjct: 66  IVEAYAENADDIDTIVEAA-SEDWAMSRMNAVDRSILRAAAAELVYVGTDRFHV-IPEWA 123

Query: 132 CIAHDFFYGDEPKFINAVLDKVS 154
            +A ++       F+  VL++V+
Sbjct: 124 SLAREYSTERSVGFVMGVLNRVA 146


>gi|298373502|ref|ZP_06983491.1| NusB family protein [Bacteroidetes oral taxon 274 str. F0058]
 gi|298274554|gb|EFI16106.1| NusB family protein [Bacteroidetes oral taxon 274 str. F0058]
          Length = 307

 Score = 37.7 bits (86), Expect = 0.51,   Method: Compositional matrix adjust.
 Identities = 19/77 (24%), Positives = 40/77 (51%), Gaps = 2/77 (2%)

Query: 89  SCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINA 148
           S +  KW   R+  +   +++  + E  E   +P+++ I+EY+ I+  +       FIN 
Sbjct: 229 SKIVPKWDVERITKMDMVLMKMAIAEFKEFPLIPIDITINEYIEISKFYSTSKSYIFING 288

Query: 149 VLDKVSRKEEIKRSGCV 165
           +LD +++  E+  SG +
Sbjct: 289 ILDTIAK--EMLASGSM 303


>gi|218246294|ref|YP_002371665.1| transcription antitermination protein NusB [Cyanothece sp. PCC
           8801]
 gi|254772631|sp|B7K4P4|NUSB_CYAP8 RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|218166772|gb|ACK65509.1| NusB antitermination factor [Cyanothece sp. PCC 8801]
          Length = 211

 Score = 37.7 bits (86), Expect = 0.51,   Method: Compositional matrix adjust.
 Identities = 25/85 (29%), Positives = 44/85 (51%), Gaps = 2/85 (2%)

Query: 72  IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
           +I  V  R+  ID  + + L + W  +RL  I   ILR  V E++    +P +V I+E +
Sbjct: 123 LIGAVNRRRTEIDQQLEAVLVD-WQLNRLPKIDRDILRIAVAEILFLE-IPNKVAINEAI 180

Query: 132 CIAHDFFYGDEPKFINAVLDKVSRK 156
            +A  +   +  +FIN VL + + +
Sbjct: 181 EMAKRYSDDEGYRFINGVLRRFTER 205


>gi|110800441|ref|YP_696427.1| ribosomal RNA small subunit methyltransferase B [Clostridium
           perfringens ATCC 13124]
 gi|110675088|gb|ABG84075.1| ribosomal RNA small subunit methyltransferase B [Clostridium
           perfringens ATCC 13124]
          Length = 442

 Score = 37.7 bits (86), Expect = 0.51,   Method: Compositional matrix adjust.
 Identities = 24/89 (26%), Positives = 47/89 (52%), Gaps = 10/89 (11%)

Query: 72  IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
           +++G +  K+ ID+++SS + +     ++D  + +ILR+ + ++     VP   I++E V
Sbjct: 45  VVYGTIKYKKMIDIILSSFVAD---IGKIDESVVNILRSAIYQMKFLDRVPPYAIVNEAV 101

Query: 132 CIAHDFFYGDEP---KFINAVLDKVSRKE 157
            +  +     EP   KF+N VL    R E
Sbjct: 102 NLTKE----TEPNLAKFVNGVLRNYLRNE 126


>gi|198277117|ref|ZP_03209648.1| hypothetical protein BACPLE_03325 [Bacteroides plebeius DSM 17135]
 gi|198269615|gb|EDY93885.1| hypothetical protein BACPLE_03325 [Bacteroides plebeius DSM 17135]
          Length = 308

 Score = 37.7 bits (86), Expect = 0.52,   Method: Compositional matrix adjust.
 Identities = 18/62 (29%), Positives = 34/62 (54%)

Query: 92  TEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLD 151
           ++ W  SR+ ++   I++  + E++   ++PV V ++EYV IA  +       FIN  LD
Sbjct: 234 SKNWDLSRVAVMDVIIMQIALAEILSFPNIPVNVSLNEYVEIAKLYSTPKSGGFINGTLD 293

Query: 152 KV 153
            +
Sbjct: 294 GI 295


>gi|113474580|ref|YP_720641.1| transcription antitermination protein NusB [Trichodesmium
           erythraeum IMS101]
 gi|119390846|sp|Q118A6|NUSB_TRIEI RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|110165628|gb|ABG50168.1| NusB antitermination factor [Trichodesmium erythraeum IMS101]
          Length = 207

 Score = 37.7 bits (86), Expect = 0.52,   Method: Compositional matrix adjust.
 Identities = 26/82 (31%), Positives = 41/82 (50%), Gaps = 2/82 (2%)

Query: 72  IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
           ++  V   ++ +D L+   + + W   RL  I   ILR  V E++    +  +V ISE V
Sbjct: 121 VLTKVNGNRKEVDKLLQESIVD-WQIERLPRIDLDILRIAVAEMM-FIGIQKQVAISEAV 178

Query: 132 CIAHDFFYGDEPKFINAVLDKV 153
            +A  +   D  KFIN VL +V
Sbjct: 179 ELAKRYSGEDGYKFINGVLRRV 200


>gi|262037941|ref|ZP_06011361.1| transcription antitermination factor NusB [Leptotrichia
           goodfellowii F0264]
 gi|261748019|gb|EEY35438.1| transcription antitermination factor NusB [Leptotrichia
           goodfellowii F0264]
          Length = 136

 Score = 37.7 bits (86), Expect = 0.55,   Method: Compositional matrix adjust.
 Identities = 21/70 (30%), Positives = 39/70 (55%), Gaps = 2/70 (2%)

Query: 87  ISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFI 146
           I S L E W++ RL  +  ++L+    E I   ++  E+ I+E + IA  + Y D  +F+
Sbjct: 64  IKSIL-EGWTYERLGTLEKALLKIAFYE-ITIKNIGYEIAINEVLEIAKKYSYDDTKEFL 121

Query: 147 NAVLDKVSRK 156
           N +L ++ +K
Sbjct: 122 NGILAQLVKK 131


>gi|317124726|ref|YP_004098838.1| NusB antitermination factor [Intrasporangium calvum DSM 43043]
 gi|315588814|gb|ADU48111.1| NusB antitermination factor [Intrasporangium calvum DSM 43043]
          Length = 137

 Score = 37.7 bits (86), Expect = 0.56,   Method: Compositional matrix adjust.
 Identities = 34/139 (24%), Positives = 63/139 (45%), Gaps = 12/139 (8%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           R  AR  A+  L++ D  G +   ++ E        D E    +     DL      + G
Sbjct: 4   RSKARARALDILFEADQRGLNAEVLLDER-----LRDPESRAGNNPYTADL------VRG 52

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
           V+ R + ID  ++   ++ W+  R+  +  +ILR G  E++    +P    I+E V +A 
Sbjct: 53  VVGRWRDIDAALTDY-SQGWTLDRMPAVDRAILRVGAWEVLFNDDIPDAAAIAEAVALAT 111

Query: 136 DFFYGDEPKFINAVLDKVS 154
           +    + P F+N +L ++S
Sbjct: 112 ELSTDESPGFVNGLLARLS 130


>gi|124021724|ref|YP_001016031.1| transcription antitermination protein NusB [Prochlorococcus marinus
           str. MIT 9303]
 gi|123962010|gb|ABM76766.1| Antitermination protein NusB [Prochlorococcus marinus str. MIT
           9303]
          Length = 211

 Score = 37.7 bits (86), Expect = 0.57,   Method: Compositional matrix adjust.
 Identities = 25/78 (32%), Positives = 40/78 (51%), Gaps = 2/78 (2%)

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
           V++++  ID  I + + E W  SRL  I   ILR  V++L    + P  V  +E V +AH
Sbjct: 127 VIEKRNSIDASIDAVM-EGWRLSRLPRIDRDILRLAVVDLTALQT-PSAVACNEAVELAH 184

Query: 136 DFFYGDEPKFINAVLDKV 153
            +      + IN VL ++
Sbjct: 185 RYSDDQGRRMINGVLRRL 202


>gi|167037728|ref|YP_001665306.1| sun protein [Thermoanaerobacter pseudethanolicus ATCC 33223]
 gi|320116143|ref|YP_004186302.1| sun protein [Thermoanaerobacter brockii subsp. finnii Ako-1]
 gi|166856562|gb|ABY94970.1| sun protein [Thermoanaerobacter pseudethanolicus ATCC 33223]
 gi|319929234|gb|ADV79919.1| sun protein [Thermoanaerobacter brockii subsp. finnii Ako-1]
          Length = 444

 Score = 37.7 bits (86), Expect = 0.58,   Method: Compositional matrix adjust.
 Identities = 26/95 (27%), Positives = 45/95 (47%), Gaps = 5/95 (5%)

Query: 64  VDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPV 123
           +D  + + ++ GV++RK  +D ++S  + +       D+     L  G+ +L+    VP 
Sbjct: 37  IDRGFTKELVFGVIERKYTLDFILSFFVKKAP-----DLKTMIFLEMGLYQLLYMDKVPS 91

Query: 124 EVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEE 158
              I+E V IA          FINAVL    R++E
Sbjct: 92  YAAINETVNIAKKVLGIKRANFINAVLRNYDREKE 126


>gi|71066624|ref|YP_265351.1| NusB antitermination factor [Psychrobacter arcticus 273-4]
 gi|119390801|sp|Q4FPZ1|NUSB_PSYA2 RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|71039609|gb|AAZ19917.1| probable NusB antitermination factor [Psychrobacter arcticus 273-4]
          Length = 375

 Score = 37.7 bits (86), Expect = 0.59,   Method: Compositional matrix adjust.
 Identities = 26/84 (30%), Positives = 47/84 (55%), Gaps = 4/84 (4%)

Query: 74  HGVM-DRKQHIDLLISSCLTEKWS--FSRLDMILCSILRAGVLELIECHSVPVEVIISEY 130
           H +M D  + ID L ++ +T++     ++LD +  +IL  G  EL     +P +V++ E 
Sbjct: 107 HEMMRDIPEQIDAL-NTLITQQLDREINKLDTVEHAILLIGAYELQNRLEIPYKVVLDEA 165

Query: 131 VCIAHDFFYGDEPKFINAVLDKVS 154
           + + + F   D  K INAVLD+++
Sbjct: 166 MKLNNHFGATDAHKLINAVLDRMA 189


>gi|145219990|ref|YP_001130699.1| sun protein [Prosthecochloris vibrioformis DSM 265]
 gi|145206154|gb|ABP37197.1| sun protein [Chlorobium phaeovibrioides DSM 265]
          Length = 445

 Score = 37.7 bits (86), Expect = 0.59,   Method: Compositional matrix adjust.
 Identities = 25/97 (25%), Positives = 46/97 (47%), Gaps = 2/97 (2%)

Query: 58  ESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIE 117
           ES     D  +   +++GV+  +  +D +I    +   +  +    + +ILR G  +L+ 
Sbjct: 32  ESSLSRTDRAFATSLVNGVLRYRLQLDFVIGHFYSH--NLQKASPAIRNILRLGAWQLLF 89

Query: 118 CHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVS 154
              VP   +++E V +A  F      K +NAVL K+S
Sbjct: 90  LDRVPAWAVVNESVRLARRFKGERMAKLVNAVLRKIS 126


>gi|83816060|ref|YP_444173.1| transcription antitermination factor NusB [Salinibacter ruber DSM
           13855]
 gi|294505831|ref|YP_003569889.1| N utilization substance protein B homolog [Salinibacter ruber M8]
 gi|119390817|sp|Q2S6K8|NUSB_SALRD RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|83757454|gb|ABC45567.1| transcription antitermination factor NusB [Salinibacter ruber DSM
           13855]
 gi|294342159|emb|CBH22937.1| N utilization substance protein B homolog [Salinibacter ruber M8]
          Length = 160

 Score = 37.7 bits (86), Expect = 0.60,   Method: Compositional matrix adjust.
 Identities = 18/61 (29%), Positives = 30/61 (49%)

Query: 93  EKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDK 152
           + W   R+  I  S+LR    EL++   VP +V + E + IA  +       F+N V+D 
Sbjct: 70  DNWEIHRIAAIDRSLLRMATTELLKFEEVPPKVSVDEAIEIAKRYSTPRSGTFVNGVIDA 129

Query: 153 V 153
           +
Sbjct: 130 I 130


>gi|307264803|ref|ZP_07546365.1| sun protein [Thermoanaerobacter wiegelii Rt8.B1]
 gi|306920061|gb|EFN50273.1| sun protein [Thermoanaerobacter wiegelii Rt8.B1]
          Length = 444

 Score = 37.7 bits (86), Expect = 0.61,   Method: Compositional matrix adjust.
 Identities = 26/96 (27%), Positives = 45/96 (46%), Gaps = 5/96 (5%)

Query: 63  HVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVP 122
            +D  + + ++ GV++RK  +D ++S  + +       D+     L  G+ +L+    VP
Sbjct: 36  EIDRGFTKELVFGVIERKYTLDFILSFFVKKAP-----DLKTMIFLEMGLYQLLYMDKVP 90

Query: 123 VEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEE 158
               I+E V IA          FINAVL    R++E
Sbjct: 91  SYAAINETVNIAKKVLGIKRANFINAVLRNYEREKE 126


>gi|291287239|ref|YP_003504055.1| NusB antitermination factor [Denitrovibrio acetiphilus DSM 12809]
 gi|290884399|gb|ADD68099.1| NusB antitermination factor [Denitrovibrio acetiphilus DSM 12809]
          Length = 147

 Score = 37.7 bits (86), Expect = 0.61,   Method: Compositional matrix adjust.
 Identities = 34/149 (22%), Positives = 61/149 (40%), Gaps = 14/149 (9%)

Query: 7   KKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDL 66
           KK+ K   R    R  A   +YQ+ I   +  EI     T  F    + + ESV     +
Sbjct: 2   KKNFKARTR---GRKFAYMMMYQLIIADYTPKEI-----TKTFWNSVKEEDESV-----I 48

Query: 67  EWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVI 126
           E+   +  G  +     D +I   +   W++ R+  +   ILR  V EL      P   +
Sbjct: 49  EFANRLFTGAAESVDANDEIICRYIRSDWTYERMGEVEKDILRVAVHELFR-QEAPYYAV 107

Query: 127 ISEYVCIAHDFFYGDEPKFINAVLDKVSR 155
           I+++V +A  +        +N +L+ + +
Sbjct: 108 INDFVTLARKYSDEKSASLVNGILENIRK 136


>gi|320011939|gb|ADW06789.1| Fmu (Sun) domain protein [Streptomyces flavogriseus ATCC 33331]
          Length = 477

 Score = 37.7 bits (86), Expect = 0.62,   Method: Compositional matrix adjust.
 Identities = 22/83 (26%), Positives = 41/83 (49%), Gaps = 3/83 (3%)

Query: 72  IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
           +++G + R+   D ++++C+        +D  +  +L  GV +L+    +P    +S  V
Sbjct: 67  LVYGTLRRQGTYDAIVAACIDR--PLREVDPPVLDVLNMGVHQLLGTR-IPTHAAVSASV 123

Query: 132 CIAHDFFYGDEPKFINAVLDKVS 154
            +A         KF+NAVL KVS
Sbjct: 124 ELARVVLGEGRAKFVNAVLRKVS 146


>gi|257059341|ref|YP_003137229.1| transcription antitermination protein NusB [Cyanothece sp. PCC
           8802]
 gi|256589507|gb|ACV00394.1| NusB antitermination factor [Cyanothece sp. PCC 8802]
          Length = 235

 Score = 37.7 bits (86), Expect = 0.62,   Method: Compositional matrix adjust.
 Identities = 26/90 (28%), Positives = 46/90 (51%), Gaps = 2/90 (2%)

Query: 67  EWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVI 126
           E+   +I  V  R+  ID  + + L + W  +RL  I   ILR  V E++    +P +V 
Sbjct: 142 EYALELIGAVNRRRTEIDQQLEAVLVD-WQLNRLPKIDRDILRIAVAEILFLE-IPNKVA 199

Query: 127 ISEYVCIAHDFFYGDEPKFINAVLDKVSRK 156
           I+E + +A  +   +  +FIN VL + + +
Sbjct: 200 INEAIEMAKRYSDDEGYRFINGVLRRFTER 229


>gi|326389542|ref|ZP_08211109.1| sun protein [Thermoanaerobacter ethanolicus JW 200]
 gi|325994547|gb|EGD52972.1| sun protein [Thermoanaerobacter ethanolicus JW 200]
          Length = 444

 Score = 37.4 bits (85), Expect = 0.62,   Method: Compositional matrix adjust.
 Identities = 26/96 (27%), Positives = 45/96 (46%), Gaps = 5/96 (5%)

Query: 63  HVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVP 122
            +D  + + ++ GV++RK  +D ++S  + +       D+     L  G+ +L+    VP
Sbjct: 36  EIDRGFTKELVFGVIERKYTLDFILSFFVKKAP-----DLKTMIFLEMGLYQLLYMDKVP 90

Query: 123 VEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEE 158
               I+E V IA          FINAVL    R++E
Sbjct: 91  SYAAINETVNIAKKVLGIKRANFINAVLRNYEREKE 126


>gi|228470129|ref|ZP_04055038.1| NusB family protein [Porphyromonas uenonis 60-3]
 gi|228308267|gb|EEK17122.1| NusB family protein [Porphyromonas uenonis 60-3]
          Length = 347

 Score = 37.4 bits (85), Expect = 0.63,   Method: Compositional matrix adjust.
 Identities = 19/74 (25%), Positives = 39/74 (52%), Gaps = 1/74 (1%)

Query: 80  KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139
           ++  D +++  L + W   R+ ++   ++   V E + C  + + V I+EY+ +A  +  
Sbjct: 263 REEYDAMLTPRL-DNWEQDRVALVDMILMEMAVAEALSCPDIALVVTINEYIELAKVYDN 321

Query: 140 GDEPKFINAVLDKV 153
                FINAVLD++
Sbjct: 322 AKSASFINAVLDRL 335


>gi|213858030|ref|ZP_03385001.1| transcription antitermination protein NusB [Salmonella enterica
           subsp. enterica serovar Typhi str. M223]
          Length = 59

 Score = 37.4 bits (85), Expect = 0.64,   Method: Compositional matrix adjust.
 Identities = 19/49 (38%), Positives = 29/49 (59%)

Query: 106 SILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVS 154
           ++LR  + EL +   VP +V I+E + +A  F   D  KF+N VLDK +
Sbjct: 3   AVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVLDKAA 51


>gi|332294978|ref|YP_004436901.1| NusB antitermination factor [Thermodesulfobium narugense DSM 14796]
 gi|332178081|gb|AEE13770.1| NusB antitermination factor [Thermodesulfobium narugense DSM 14796]
          Length = 134

 Score = 37.4 bits (85), Expect = 0.66,   Method: Compositional matrix adjust.
 Identities = 37/137 (27%), Positives = 64/137 (46%), Gaps = 18/137 (13%)

Query: 20  RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79
           R   ++ LY+++I   ST  ++ +    R+    + +        D E+ RV   G+++ 
Sbjct: 9   REMVLKILYELEINSQSTINVLMQ----RYAEHIQPE--------DFEFIRVRAEGIIEN 56

Query: 80  KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139
           K  ID L+   L+  W   R+ +    I+   V E+      P  + I+E V ++    Y
Sbjct: 57  KDAIDKLLDE-LSIDWPTERMVVTDRLIMEIAVFEMNYLKLSP-SIAINEAVELSK--LY 112

Query: 140 GDEP--KFINAVLDKVS 154
           G E   KF+NAVL KV+
Sbjct: 113 GTEKSYKFVNAVLSKVA 129


>gi|15895002|ref|NP_348351.1| rRNA methylase [Clostridium acetobutylicum ATCC 824]
 gi|15024692|gb|AAK79691.1|AE007682_1 Predicted rRNA methylase, SUN family [Clostridium acetobutylicum
           ATCC 824]
 gi|325509139|gb|ADZ20775.1| rRNA methylase, SUN family [Clostridium acetobutylicum EA 2018]
          Length = 441

 Score = 37.4 bits (85), Expect = 0.67,   Method: Compositional matrix adjust.
 Identities = 23/88 (26%), Positives = 43/88 (48%), Gaps = 2/88 (2%)

Query: 72  IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
           I++G +  K  ID++IS  +  K   +++D  + ++LR  + ++     +P    ++E V
Sbjct: 46  IVYGTIKYKYSIDIIISKFVKTK--INKIDKRVLNVLRMSIYQIRYLDKIPDFAAVNEAV 103

Query: 132 CIAHDFFYGDEPKFINAVLDKVSRKEEI 159
            I   +      KF+NAVL    R   I
Sbjct: 104 NITKKYISLKSSKFVNAVLRNYLRNPNI 131


>gi|269797978|ref|YP_003311878.1| NusB antitermination factor [Veillonella parvula DSM 2008]
 gi|269094607|gb|ACZ24598.1| NusB antitermination factor [Veillonella parvula DSM 2008]
          Length = 134

 Score = 37.4 bits (85), Expect = 0.67,   Method: Compositional matrix adjust.
 Identities = 30/107 (28%), Positives = 52/107 (48%), Gaps = 6/107 (5%)

Query: 52  DTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISS-CLTEKWSFSRLDMILCSILRA 110
           D +    +++  +D  +   II GV+   + ID  +   C + K   + LD +  SILR 
Sbjct: 29  DVQFPEGNIHKAMDKAYANSIIEGVLSNAEAIDATLQPFCKSRK--VANLDKVDRSILRI 86

Query: 111 GVLELIECHSVPVE--VIISEYVCIAHDFFYGDEPKFINAVLDKVSR 155
            V E+      P+E  + I+E + +A +F      K INA+LD  ++
Sbjct: 87  AVWEM-NNKVEPLEPSIAINEAIQLAKEFGSDASYKLINAILDAYNK 132


>gi|255007968|ref|ZP_05280094.1| putative N utilization substance protein [Bacteroides fragilis
           3_1_12]
 gi|313145684|ref|ZP_07807877.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12]
 gi|313134451|gb|EFR51811.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12]
          Length = 308

 Score = 37.4 bits (85), Expect = 0.69,   Method: Compositional matrix adjust.
 Identities = 20/75 (26%), Positives = 39/75 (52%), Gaps = 2/75 (2%)

Query: 92  TEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLD 151
           T+ W   R+  +   I++  + E++   ++PV V ++EYV IA  +       FIN  LD
Sbjct: 234 TKNWDLDRVAFMDVIIMQCALAEILSFPNIPVSVSLNEYVEIAKLYSTVKSGSFINGTLD 293

Query: 152 KVSRKEEIKRSGCVS 166
            +    ++K+ G ++
Sbjct: 294 GIVN--QLKKEGKLT 306


>gi|253563478|ref|ZP_04840935.1| conserved hypothetical protein [Bacteroides sp. 3_2_5]
 gi|265762654|ref|ZP_06091222.1| conserved hypothetical protein [Bacteroides sp. 2_1_16]
 gi|251947254|gb|EES87536.1| conserved hypothetical protein [Bacteroides sp. 3_2_5]
 gi|263255262|gb|EEZ26608.1| conserved hypothetical protein [Bacteroides sp. 2_1_16]
          Length = 308

 Score = 37.4 bits (85), Expect = 0.69,   Method: Compositional matrix adjust.
 Identities = 20/75 (26%), Positives = 39/75 (52%), Gaps = 2/75 (2%)

Query: 92  TEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLD 151
           T+ W   R+  +   I++  + E++   ++PV V ++EYV IA  +       FIN  LD
Sbjct: 234 TKNWDLDRVAFMDVIIMQCALAEILSFPNIPVSVSLNEYVEIAKLYSTVKSGSFINGTLD 293

Query: 152 KVSRKEEIKRSGCVS 166
            +    ++K+ G ++
Sbjct: 294 GIVN--QLKKEGKLT 306


>gi|238019309|ref|ZP_04599735.1| hypothetical protein VEIDISOL_01173 [Veillonella dispar ATCC 17748]
 gi|237864008|gb|EEP65298.1| hypothetical protein VEIDISOL_01173 [Veillonella dispar ATCC 17748]
          Length = 134

 Score = 37.4 bits (85), Expect = 0.69,   Method: Compositional matrix adjust.
 Identities = 28/106 (26%), Positives = 50/106 (47%), Gaps = 4/106 (3%)

Query: 52  DTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISS-CLTEKWSFSRLDMILCSILRA 110
           D +     ++  +D  +   II+GV+   + ID  +   C + K     LD +  +ILR 
Sbjct: 29  DVQFPEGHMHKSMDKAYANSIINGVLSASETIDATLQPFCKSRK--VENLDKVDRAILRI 86

Query: 111 GVLELI-ECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSR 155
            + E+  E   +   + I+E + +A DF      K INA+LD  ++
Sbjct: 87  ALWEMTNEADPLEPSIAINEAIQLAKDFGSDSSYKLINAILDAYNK 132


>gi|332879944|ref|ZP_08447629.1| putative transcription antitermination factor NusB [Capnocytophaga
           sp. oral taxon 329 str. F0087]
 gi|332682155|gb|EGJ55067.1| putative transcription antitermination factor NusB [Capnocytophaga
           sp. oral taxon 329 str. F0087]
          Length = 313

 Score = 37.4 bits (85), Expect = 0.70,   Method: Compositional matrix adjust.
 Identities = 21/73 (28%), Positives = 41/73 (56%), Gaps = 4/73 (5%)

Query: 95  WSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLD--- 151
           W   R+ ++   +L+  V EL+   S+P++V I+EY+ ++ ++       FIN +L+   
Sbjct: 237 WDKERVAVLDNILLKMAVCELLYFPSIPIKVTINEYLELSKEYSTPKSSLFINGILNVIH 296

Query: 152 -KVSRKEEIKRSG 163
            ++  KE IK+ G
Sbjct: 297 KELEEKELIKKIG 309


>gi|150006310|ref|YP_001301054.1| putative N utilization substance protein [Bacteroides vulgatus ATCC
           8482]
 gi|212691834|ref|ZP_03299962.1| hypothetical protein BACDOR_01329 [Bacteroides dorei DSM 17855]
 gi|237708040|ref|ZP_04538521.1| conserved hypothetical protein [Bacteroides sp. 9_1_42FAA]
 gi|237724809|ref|ZP_04555290.1| conserved hypothetical protein [Bacteroides sp. D4]
 gi|254885163|ref|ZP_05257873.1| conserved hypothetical protein [Bacteroides sp. 4_3_47FAA]
 gi|265756189|ref|ZP_06090518.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA]
 gi|294776295|ref|ZP_06741779.1| transcription antitermination factor NusB [Bacteroides vulgatus
           PC510]
 gi|319641350|ref|ZP_07996045.1| N utilization substance protein [Bacteroides sp. 3_1_40A]
 gi|149934734|gb|ABR41432.1| putative N utilization substance protein [Bacteroides vulgatus ATCC
           8482]
 gi|212665590|gb|EEB26162.1| hypothetical protein BACDOR_01329 [Bacteroides dorei DSM 17855]
 gi|229437004|gb|EEO47081.1| conserved hypothetical protein [Bacteroides dorei 5_1_36/D4]
 gi|229457868|gb|EEO63589.1| conserved hypothetical protein [Bacteroides sp. 9_1_42FAA]
 gi|254837956|gb|EET18265.1| conserved hypothetical protein [Bacteroides sp. 4_3_47FAA]
 gi|263233780|gb|EEZ19389.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA]
 gi|294449882|gb|EFG18398.1| transcription antitermination factor NusB [Bacteroides vulgatus
           PC510]
 gi|317387031|gb|EFV67915.1| N utilization substance protein [Bacteroides sp. 3_1_40A]
          Length = 308

 Score = 37.4 bits (85), Expect = 0.73,   Method: Compositional matrix adjust.
 Identities = 21/68 (30%), Positives = 35/68 (51%), Gaps = 1/68 (1%)

Query: 86  LISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKF 145
           LIS   T+ W   R+  +   I++  + E++   ++PV V ++EYV IA  +       F
Sbjct: 229 LISEN-TKNWDLDRVAFMDVVIMQIALAEILSFPNIPVSVSLNEYVEIAKLYSTPKSGGF 287

Query: 146 INAVLDKV 153
           IN  LD +
Sbjct: 288 INGTLDGI 295


>gi|326780519|ref|ZP_08239784.1| Fmu (Sun) domain protein [Streptomyces cf. griseus XylebKG-1]
 gi|326660852|gb|EGE45698.1| Fmu (Sun) domain protein [Streptomyces cf. griseus XylebKG-1]
          Length = 477

 Score = 37.4 bits (85), Expect = 0.74,   Method: Compositional matrix adjust.
 Identities = 36/157 (22%), Positives = 64/157 (40%), Gaps = 14/157 (8%)

Query: 1   MTIQDNKKDLKLSHRRG---IARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDV 57
           M  Q  ++  K  HRR      R  A +AL  +D        ++      +  A  + D 
Sbjct: 1   MNDQPRRRPAK-PHRRPKKDPVRFLAFEALRAVDERDAYANLVLPPL-LKKARAKGDFDA 58

Query: 58  ESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIE 117
               L  +L      ++G + R+   D ++++C+        +D  +  +L  GV +L+ 
Sbjct: 59  RDAALATEL------VYGTLRRQGTYDAIVAACIDR--PLREVDPPVLDVLNMGVHQLLG 110

Query: 118 CHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVS 154
              +P    +S  V +A         KF+NAVL KV+
Sbjct: 111 TR-IPTHAAVSASVELARVVLGEGRAKFVNAVLRKVT 146


>gi|182439855|ref|YP_001827574.1| putative RNA-binding Sun protein [Streptomyces griseus subsp.
           griseus NBRC 13350]
 gi|178468371|dbj|BAG22891.1| putative RNA-binding Sun protein [Streptomyces griseus subsp.
           griseus NBRC 13350]
          Length = 477

 Score = 37.4 bits (85), Expect = 0.74,   Method: Compositional matrix adjust.
 Identities = 36/157 (22%), Positives = 64/157 (40%), Gaps = 14/157 (8%)

Query: 1   MTIQDNKKDLKLSHRRG---IARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDV 57
           M  Q  ++  K  HRR      R  A +AL  +D        ++      +  A  + D 
Sbjct: 1   MNDQPRRRPAK-PHRRPKKDPVRFLAFEALRAVDERDAYANLVLPPL-LKKARAKGDFDA 58

Query: 58  ESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIE 117
               L  +L      ++G + R+   D ++++C+        +D  +  +L  GV +L+ 
Sbjct: 59  RDAALATEL------VYGTLRRQGTYDAIVAACIDR--PLREVDPPVLDVLNMGVHQLLG 110

Query: 118 CHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVS 154
              +P    +S  V +A         KF+NAVL KV+
Sbjct: 111 TR-IPTHAAVSASVELARVVLGEGRAKFVNAVLRKVT 146


>gi|119896608|ref|YP_931821.1| transcription antitermination protein NusB [Azoarcus sp. BH72]
 gi|166215662|sp|A1K279|NUSB_AZOSB RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|119669021|emb|CAL92934.1| putative N utilization substance protein B [Azoarcus sp. BH72]
          Length = 155

 Score = 37.4 bits (85), Expect = 0.76,   Method: Compositional matrix adjust.
 Identities = 35/134 (26%), Positives = 58/134 (43%), Gaps = 12/134 (8%)

Query: 23  AVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQH 82
           A+Q +YQ  + G S   + +  E     AD        +  VD E F +++ G +D    
Sbjct: 14  ALQGVYQWLLSGNSPQVVEAHVEAE--AAD--------FDKVDRELFVMLLRGTLDNVGA 63

Query: 83  IDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDE 142
           +    S  +        L  I  +IL  G  EL      P  V+I+E + +A  +   D 
Sbjct: 64  LQDEFSPFIHR--PIEELSPIERAILLLGTHELKHNIETPYRVVINEAIELAKAYGGTDG 121

Query: 143 PKFINAVLDKVSRK 156
            +F+N VLDK++ +
Sbjct: 122 HRFVNGVLDKLAAR 135


>gi|294155614|ref|YP_003559998.1| transcription anti-termination factor NusB [Mycoplasma crocodyli
           MP145]
 gi|291600060|gb|ADE19556.1| transcription anti-termination factor NusB [Mycoplasma crocodyli
           MP145]
          Length = 150

 Score = 37.4 bits (85), Expect = 0.76,   Method: Compositional matrix adjust.
 Identities = 32/152 (21%), Positives = 69/152 (45%), Gaps = 26/152 (17%)

Query: 9   DLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEW 68
           ++K S R+   R   +Q LY+ ++        I+ ++ + F ++ ++             
Sbjct: 2   EVKKSRRQN--REEVIQVLYRFELFNEKIDAAIA-FQEFSFLSNEQVK------------ 46

Query: 69  FRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIIS 128
               I  + +    +  +I+  L + W++ R+  ++ +IL     EL    ++P  ++I+
Sbjct: 47  ---FIEKIDNNYDFLKSIIAKFLNQNWAWLRIPPLIKAILINASAELF---TIPPRIVIN 100

Query: 129 EYVCIAHDFF---YGDEP--KFINAVLDKVSR 155
           E V I  D+F     D+   KF+NA+L  V +
Sbjct: 101 EAVEITKDYFCMTPDDDKYYKFVNAILQNVYK 132


>gi|172057934|ref|YP_001814394.1| sun protein [Exiguobacterium sibiricum 255-15]
 gi|171990455|gb|ACB61377.1| sun protein [Exiguobacterium sibiricum 255-15]
          Length = 446

 Score = 37.4 bits (85), Expect = 0.76,   Method: Compositional matrix adjust.
 Identities = 26/105 (24%), Positives = 48/105 (45%), Gaps = 3/105 (2%)

Query: 64  VDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPV 123
            D+  +  +++G + R+  +D ++   LT++    +LD  +  +LR  V +L     +P 
Sbjct: 37  ADVGLYTELVYGTLSRELTLDYILEPFLTKQ---KKLDPFMRPLLRMSVYQLFYLDRIPD 93

Query: 124 EVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRSGCVSAI 168
             +I+E V IA         K +N VL  V R  +   S   S +
Sbjct: 94  HAVINEAVEIAKTRGKPHIAKVVNGVLRNVLRTGKPDFSAIPSTV 138


>gi|313886911|ref|ZP_07820614.1| transcription antitermination factor NusB [Porphyromonas
           asaccharolytica PR426713P-I]
 gi|312923608|gb|EFR34414.1| transcription antitermination factor NusB [Porphyromonas
           asaccharolytica PR426713P-I]
          Length = 347

 Score = 37.4 bits (85), Expect = 0.77,   Method: Compositional matrix adjust.
 Identities = 19/74 (25%), Positives = 39/74 (52%), Gaps = 1/74 (1%)

Query: 80  KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139
           ++  D +++  L + W   R+ ++   ++   V E + C  + + V I+EY+ +A  +  
Sbjct: 263 REEYDAMLTPRL-DNWEQDRVALVDMILMEMAVAEALNCPDIALVVTINEYIELAKVYDN 321

Query: 140 GDEPKFINAVLDKV 153
                FINAVLD++
Sbjct: 322 SKSASFINAVLDRL 335


>gi|21219974|ref|NP_625753.1| putative Sun-family protein [Streptomyces coelicolor A3(2)]
 gi|289772815|ref|ZP_06532193.1| RNA-binding Sun protein [Streptomyces lividans TK24]
 gi|7209232|emb|CAB76894.1| conserved hypothetical Sun-family protein SCL6.29c [Streptomyces
           coelicolor A3(2)]
 gi|289703014|gb|EFD70443.1| RNA-binding Sun protein [Streptomyces lividans TK24]
          Length = 475

 Score = 37.4 bits (85), Expect = 0.77,   Method: Compositional matrix adjust.
 Identities = 23/86 (26%), Positives = 42/86 (48%), Gaps = 3/86 (3%)

Query: 72  IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
           +++G + R+   D +I+ C+        +D  +  +L  GV +L+    +P    +S  V
Sbjct: 72  LVYGTLRRQGTYDAIIADCVDR--PLREVDPPVLDVLSLGVHQLLGTR-IPSHAAVSASV 128

Query: 132 CIAHDFFYGDEPKFINAVLDKVSRKE 157
            +A         KF+NAVL KV+R +
Sbjct: 129 ELARVVLGDGRAKFVNAVLRKVARDD 154


>gi|57242527|ref|ZP_00370465.1| transcription antitermination factor NusB [Campylobacter
           upsaliensis RM3195]
 gi|57016812|gb|EAL53595.1| transcription antitermination factor NusB [Campylobacter
           upsaliensis RM3195]
          Length = 132

 Score = 37.4 bits (85), Expect = 0.79,   Method: Compositional matrix adjust.
 Identities = 36/143 (25%), Positives = 64/143 (44%), Gaps = 20/143 (13%)

Query: 16  RGIARLAAVQALYQIDIIGCS---TTEIISEYETYRFCADTELDVESVYLHVDLEWFRVI 72
           R  AR + +  LY +++ G +    TE + E +      +  L   S+Y           
Sbjct: 4   RHQARQSVISLLYALELNGKNDNFITEFLQEKKIRNEAKNFTL---SLY----------- 49

Query: 73  IHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVC 132
            +GV++  Q +D  I   L E     ++  I  +ILR G  EL+   ++   ++I+E V 
Sbjct: 50  -NGVLEHLQSLDECIDVFLNEN-KIHQIGHIERAILRLGAFELLHTDTLAA-IVINEAVE 106

Query: 133 IAHDFFYGDEPKFINAVLDKVSR 155
           +  +    + PK IN VLD + +
Sbjct: 107 LTKEMANENAPKLINGVLDGLQK 129


>gi|237747092|ref|ZP_04577572.1| transcription termination [Oxalobacter formigenes HOxBLS]
 gi|229378443|gb|EEO28534.1| transcription termination [Oxalobacter formigenes HOxBLS]
          Length = 159

 Score = 37.4 bits (85), Expect = 0.80,   Method: Compositional matrix adjust.
 Identities = 22/61 (36%), Positives = 31/61 (50%)

Query: 96  SFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSR 155
           S   L  +  +IL  G  EL     +P  V+I+E V +   F   D  KF+N VLDK++ 
Sbjct: 87  SLDELSPVEHAILLLGAYELKNHIEIPYRVVINEAVELTKSFGGIDGHKFVNGVLDKIAA 146

Query: 156 K 156
           K
Sbjct: 147 K 147


>gi|256788927|ref|ZP_05527358.1| putative Sun-family protein [Streptomyces lividans TK24]
          Length = 451

 Score = 37.0 bits (84), Expect = 0.81,   Method: Compositional matrix adjust.
 Identities = 23/86 (26%), Positives = 42/86 (48%), Gaps = 3/86 (3%)

Query: 72  IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
           +++G + R+   D +I+ C+        +D  +  +L  GV +L+    +P    +S  V
Sbjct: 48  LVYGTLRRQGTYDAIIADCVDRP--LREVDPPVLDVLSLGVHQLLGTR-IPSHAAVSASV 104

Query: 132 CIAHDFFYGDEPKFINAVLDKVSRKE 157
            +A         KF+NAVL KV+R +
Sbjct: 105 ELARVVLGDGRAKFVNAVLRKVARDD 130


>gi|224026161|ref|ZP_03644527.1| hypothetical protein BACCOPRO_02917 [Bacteroides coprophilus DSM
           18228]
 gi|224019397|gb|EEF77395.1| hypothetical protein BACCOPRO_02917 [Bacteroides coprophilus DSM
           18228]
          Length = 308

 Score = 37.0 bits (84), Expect = 0.82,   Method: Compositional matrix adjust.
 Identities = 20/68 (29%), Positives = 37/68 (54%), Gaps = 1/68 (1%)

Query: 86  LISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKF 145
           LIS   ++ W  +R+ ++   I++  + E++   ++PV V ++EYV IA  +       F
Sbjct: 229 LISEG-SKNWDLNRVAVMDVVIMQIALAEILSFPNIPVNVSLNEYVEIAKLYSTPKSGGF 287

Query: 146 INAVLDKV 153
           IN  LD +
Sbjct: 288 INGTLDGI 295


>gi|53712491|ref|YP_098483.1| putative nitrogen utilization substance protein [Bacteroides
           fragilis YCH46]
 gi|52215356|dbj|BAD47949.1| putative nitrogen utilization substance protein [Bacteroides
           fragilis YCH46]
          Length = 258

 Score = 37.0 bits (84), Expect = 0.83,   Method: Compositional matrix adjust.
 Identities = 20/75 (26%), Positives = 39/75 (52%), Gaps = 2/75 (2%)

Query: 92  TEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLD 151
           T+ W   R+  +   I++  + E++   ++PV V ++EYV IA  +       FIN  LD
Sbjct: 184 TKNWDLDRVAFMDVIIMQCALAEILSFPNIPVSVSLNEYVEIAKLYSTVKSGSFINGTLD 243

Query: 152 KVSRKEEIKRSGCVS 166
            +    ++K+ G ++
Sbjct: 244 GIVN--QLKKEGKLT 256


>gi|60680691|ref|YP_210835.1| putative N utilization substance protein [Bacteroides fragilis NCTC
           9343]
 gi|60492125|emb|CAH06888.1| putative N utilization substance protein [Bacteroides fragilis NCTC
           9343]
 gi|301162218|emb|CBW21763.1| putative N utilization substance protein [Bacteroides fragilis
           638R]
          Length = 294

 Score = 37.0 bits (84), Expect = 0.84,   Method: Compositional matrix adjust.
 Identities = 20/75 (26%), Positives = 39/75 (52%), Gaps = 2/75 (2%)

Query: 92  TEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLD 151
           T+ W   R+  +   I++  + E++   ++PV V ++EYV IA  +       FIN  LD
Sbjct: 220 TKNWDLDRVAFMDVIIMQCALAEILSFPNIPVSVSLNEYVEIAKLYSTVKSGSFINGTLD 279

Query: 152 KVSRKEEIKRSGCVS 166
            +    ++K+ G ++
Sbjct: 280 GIVN--QLKKEGKLT 292


>gi|323141164|ref|ZP_08076065.1| ribosomal RNA small subunit methyltransferase B
           [Phascolarctobacterium sp. YIT 12067]
 gi|322414307|gb|EFY05125.1| ribosomal RNA small subunit methyltransferase B
           [Phascolarctobacterium sp. YIT 12067]
          Length = 453

 Score = 37.0 bits (84), Expect = 0.84,   Method: Compositional matrix adjust.
 Identities = 19/87 (21%), Positives = 42/87 (48%), Gaps = 2/87 (2%)

Query: 72  IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
           +++G +     +D  ++ C++      ++   + +ILR    +L+    +P    ++E V
Sbjct: 55  LVYGTVKASGTLDWYLAQCVSR--PLDKVAGDILAILRISTYQLLYMTRIPASAAVNEAV 112

Query: 132 CIAHDFFYGDEPKFINAVLDKVSRKEE 158
            +A    +    KF+N VL  + RK+E
Sbjct: 113 KLARSVSHEGSAKFVNGVLRGLLRKQE 139


>gi|302343804|ref|YP_003808333.1| NusB antitermination factor [Desulfarculus baarsii DSM 2075]
 gi|301640417|gb|ADK85739.1| NusB antitermination factor [Desulfarculus baarsii DSM 2075]
          Length = 142

 Score = 37.0 bits (84), Expect = 0.84,   Method: Compositional matrix adjust.
 Identities = 34/139 (24%), Positives = 62/139 (44%), Gaps = 13/139 (9%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           R ++R  A++ LYQ++  G    E         F A  +L            + R ++ G
Sbjct: 4   RSLSRELALKVLYQMEH-GDQDAEAALTVFAENFAAPEKL----------FAYTRQLVLG 52

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLEL-IECHSVPVEVIISEYVCIA 134
           V   ++ ID +++  ++ KW   R+  +  +ILR    E+ +    VP +  ISE + ++
Sbjct: 53  VEQNRRRIDEMLNR-VSRKWRVERMSWVDRNILRLACYEIYLAPQPVPPKAAISEALDLS 111

Query: 135 HDFFYGDEPKFINAVLDKV 153
             +       FIN VLD +
Sbjct: 112 KRYAEDCSCSFINGVLDSL 130


>gi|33862283|ref|NP_893843.1| transcription antitermination protein NusB [Prochlorococcus marinus
           str. MIT 9313]
 gi|33640396|emb|CAE20185.1| Antitermination protein NusB [Prochlorococcus marinus str. MIT
           9313]
          Length = 222

 Score = 37.0 bits (84), Expect = 0.84,   Method: Compositional matrix adjust.
 Identities = 28/88 (31%), Positives = 44/88 (50%), Gaps = 6/88 (6%)

Query: 66  LEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEV 125
           LE  R++I    +++  ID  I + + E W  SRL  I   ILR  V++L    + P  V
Sbjct: 132 LERVRLVI----EQRNSIDASIDAVM-EGWRLSRLPRIDRDILRLAVVDLTALQT-PFAV 185

Query: 126 IISEYVCIAHDFFYGDEPKFINAVLDKV 153
             +E V +AH +      + IN VL ++
Sbjct: 186 ACNEAVELAHRYSDDQGRRMINGVLRRL 213


>gi|330836447|ref|YP_004411088.1| NusB antitermination factor [Spirochaeta coccoides DSM 17374]
 gi|329748350|gb|AEC01706.1| NusB antitermination factor [Spirochaeta coccoides DSM 17374]
          Length = 138

 Score = 37.0 bits (84), Expect = 0.86,   Method: Compositional matrix adjust.
 Identities = 25/86 (29%), Positives = 44/86 (51%), Gaps = 1/86 (1%)

Query: 68  WFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVII 127
           + R ++ G ++    ID +I+   + + +F R+D+I  +ILR  V  L         VII
Sbjct: 23  FARYLVAGTLENIDGIDDVIA-AYSVRRAFDRIDVIDRNILRISVFSLFFSEDTHPHVII 81

Query: 128 SEYVCIAHDFFYGDEPKFINAVLDKV 153
            E V ++ +F      +FIN +LD +
Sbjct: 82  DEAVKLSQEFSSEVNYRFINGLLDAL 107


>gi|255534372|ref|YP_003094743.1| Transcription termination protein NusB [Flavobacteriaceae bacterium
           3519-10]
 gi|255340568|gb|ACU06681.1| Transcription termination protein NusB [Flavobacteriaceae bacterium
           3519-10]
          Length = 301

 Score = 37.0 bits (84), Expect = 0.88,   Method: Compositional matrix adjust.
 Identities = 20/63 (31%), Positives = 31/63 (49%)

Query: 93  EKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDK 152
           E W   R+ ++   IL   + EL      P  V+I+EY+ I+  F       FIN +LDK
Sbjct: 234 ENWDIERVSLVDKIILVTAITELDYFPLTPARVVINEYIEISKVFSTDRSNIFINGILDK 293

Query: 153 VSR 155
            ++
Sbjct: 294 YTK 296


>gi|315303726|ref|ZP_07874237.1| ribosomal RNA small subunit methyltransferase B [Listeria ivanovii
           FSL F6-596]
 gi|313627903|gb|EFR96525.1| ribosomal RNA small subunit methyltransferase B [Listeria ivanovii
           FSL F6-596]
          Length = 446

 Score = 37.0 bits (84), Expect = 0.89,   Method: Compositional matrix adjust.
 Identities = 25/85 (29%), Positives = 41/85 (48%), Gaps = 5/85 (5%)

Query: 72  IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
           +++G   RK  +D  ++  L ++      D  + ++LR  V +L     VP   I++E  
Sbjct: 49  LVYGTTQRKITLDYYLAPFLNKEP-----DNWVKNLLRMSVYQLTFLDKVPEHAILNEAG 103

Query: 132 CIAHDFFYGDEPKFINAVLDKVSRK 156
            IA D  +    KF+N VL  V RK
Sbjct: 104 DIAKDLGHQGVTKFVNGVLRNVIRK 128


>gi|282850207|ref|ZP_06259586.1| transcription antitermination factor NusB [Veillonella parvula ATCC
           17745]
 gi|282579700|gb|EFB85104.1| transcription antitermination factor NusB [Veillonella parvula ATCC
           17745]
          Length = 134

 Score = 37.0 bits (84), Expect = 0.89,   Method: Compositional matrix adjust.
 Identities = 28/106 (26%), Positives = 51/106 (48%), Gaps = 4/106 (3%)

Query: 52  DTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISS-CLTEKWSFSRLDMILCSILRA 110
           D +    +++  +D  +   II GV+   + ID  +   C + K   + LD +  SILR 
Sbjct: 29  DVQFPEGNIHKAMDKAYANSIIEGVLSNVEAIDATLQPFCKSRK--VANLDKVDRSILRI 86

Query: 111 GVLELI-ECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSR 155
            V E+  +   +   + I+E + +A +F      K INA+LD  ++
Sbjct: 87  AVWEMTNKVEPLEPSIAINEAIQLAKEFGSDASYKLINAILDAYNK 132


>gi|326203177|ref|ZP_08193043.1| sun protein [Clostridium papyrosolvens DSM 2782]
 gi|325986823|gb|EGD47653.1| sun protein [Clostridium papyrosolvens DSM 2782]
          Length = 467

 Score = 37.0 bits (84), Expect = 0.91,   Method: Compositional matrix adjust.
 Identities = 32/140 (22%), Positives = 63/140 (45%), Gaps = 15/140 (10%)

Query: 18  IARLAAVQALYQIDIIGCSTTEIISEYETY-RFCADTELDVESVYLHVDLEWFRVIIHGV 76
           +AR  A++ LY I           +E + Y     +  LD + +   +D  +   +++G 
Sbjct: 23  LARETALKILYDI-----------TENQAYSNISVNRHLDNDKLR-EIDRSFATELVYGT 70

Query: 77  MDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHD 136
           +     ID +I    + K    +L   + ++LR GV +L+    +PV    +  V +A  
Sbjct: 71  VKWLLQIDYIIGKYSSVK--LKKLSPWIKNVLRLGVYQLLHTDRIPVSAACNTAVELAKR 128

Query: 137 FFYGDEPKFINAVLDKVSRK 156
           + +    +F+NAVL  +S+ 
Sbjct: 129 YGHQASSRFVNAVLRNISKN 148


>gi|313618293|gb|EFR90347.1| ribosomal RNA small subunit methyltransferase B [Listeria innocua
           FSL S4-378]
          Length = 446

 Score = 37.0 bits (84), Expect = 0.92,   Method: Compositional matrix adjust.
 Identities = 25/85 (29%), Positives = 41/85 (48%), Gaps = 5/85 (5%)

Query: 72  IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
           +++G   RK  +D  ++  L ++      D  + ++LR  V +L     VP   I++E  
Sbjct: 49  LVYGTTQRKITLDYYLAPFLNKEP-----DNWVKNLLRMSVYQLTFLDKVPEHAILNEAG 103

Query: 132 CIAHDFFYGDEPKFINAVLDKVSRK 156
            IA D  +    KF+N VL  V RK
Sbjct: 104 DIAKDLGHQGVTKFVNGVLRNVIRK 128


>gi|328466174|gb|EGF37331.1| 16S rRNA methyltransferase B [Listeria monocytogenes 1816]
          Length = 399

 Score = 37.0 bits (84), Expect = 0.92,   Method: Compositional matrix adjust.
 Identities = 25/85 (29%), Positives = 41/85 (48%), Gaps = 5/85 (5%)

Query: 72  IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
           +++G   RK  +D  ++  L ++      D  + ++LR  V +L     VP   I++E  
Sbjct: 4   LVYGTTQRKITLDYYLAPFLNKEP-----DNWVKNLLRMSVYQLTFLDKVPEHAILNEAG 58

Query: 132 CIAHDFFYGDEPKFINAVLDKVSRK 156
            IA D  +    KF+N VL  V RK
Sbjct: 59  DIAKDLGHQGVTKFVNGVLRNVIRK 83


>gi|116873257|ref|YP_850038.1| sun protein [Listeria welshimeri serovar 6b str. SLCC5334]
 gi|116742135|emb|CAK21259.1| sun protein [Listeria welshimeri serovar 6b str. SLCC5334]
          Length = 444

 Score = 37.0 bits (84), Expect = 0.93,   Method: Compositional matrix adjust.
 Identities = 25/85 (29%), Positives = 41/85 (48%), Gaps = 5/85 (5%)

Query: 72  IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
           +++G   RK  +D  ++  L ++      D  + ++LR  V +L     VP   I++E  
Sbjct: 49  LVYGTTQRKITLDYYLAPFLNKEP-----DNWVKNLLRMSVYQLTFLDKVPEHAILNEAG 103

Query: 132 CIAHDFFYGDEPKFINAVLDKVSRK 156
            IA D  +    KF+N VL  V RK
Sbjct: 104 DIAKDLGHQGVTKFVNGVLRNVIRK 128


>gi|329961415|ref|ZP_08299538.1| transcription antitermination factor NusB [Bacteroides fluxus YIT
           12057]
 gi|328531892|gb|EGF58715.1| transcription antitermination factor NusB [Bacteroides fluxus YIT
           12057]
          Length = 308

 Score = 37.0 bits (84), Expect = 0.94,   Method: Compositional matrix adjust.
 Identities = 19/75 (25%), Positives = 38/75 (50%), Gaps = 2/75 (2%)

Query: 92  TEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLD 151
           T  W   R+  +   I++  + E++   ++PV V ++EYV IA  +       F+N  LD
Sbjct: 234 TRNWDLDRVAFMDVVIMQCALAEILSFPNIPVSVSLNEYVDIAKVYSTVKSGSFVNGTLD 293

Query: 152 KVSRKEEIKRSGCVS 166
            +    ++K+ G ++
Sbjct: 294 GIVN--QLKKEGKLT 306


>gi|226224425|ref|YP_002758532.1| RNA-binding Sun protein [Listeria monocytogenes Clip81459]
 gi|225876887|emb|CAS05596.1| Putative RNA-binding Sun protein [Listeria monocytogenes serotype
           4b str. CLIP 80459]
          Length = 444

 Score = 37.0 bits (84), Expect = 0.94,   Method: Compositional matrix adjust.
 Identities = 25/85 (29%), Positives = 41/85 (48%), Gaps = 5/85 (5%)

Query: 72  IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
           +++G   RK  +D  ++  L ++      D  + ++LR  V +L     VP   I++E  
Sbjct: 49  LVYGTTQRKITLDYYLAPFLNKEP-----DNWVKNLLRMSVYQLTFLDKVPEHAILNEAG 103

Query: 132 CIAHDFFYGDEPKFINAVLDKVSRK 156
            IA D  +    KF+N VL  V RK
Sbjct: 104 DIAKDLGHQGVTKFVNGVLRNVIRK 128


>gi|217964025|ref|YP_002349703.1| ribosomal RNA small subunit methyltransferase B [Listeria
           monocytogenes HCC23]
 gi|217333295|gb|ACK39089.1| ribosomal RNA small subunit methyltransferase B [Listeria
           monocytogenes HCC23]
 gi|307571404|emb|CAR84583.1| tRNA and rRNA cytosine-C5-methylase, putative [Listeria
           monocytogenes L99]
          Length = 444

 Score = 37.0 bits (84), Expect = 0.95,   Method: Compositional matrix adjust.
 Identities = 25/85 (29%), Positives = 41/85 (48%), Gaps = 5/85 (5%)

Query: 72  IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
           +++G   RK  +D  ++  L ++      D  + ++LR  V +L     VP   I++E  
Sbjct: 49  LVYGTTQRKITLDYYLAPFLNKEP-----DNWVKNLLRMSVYQLTFLDKVPEHAILNEAG 103

Query: 132 CIAHDFFYGDEPKFINAVLDKVSRK 156
            IA D  +    KF+N VL  V RK
Sbjct: 104 DIAKDLGHQGVTKFVNGVLRNVIRK 128


>gi|16801002|ref|NP_471270.1| hypothetical protein lin1936 [Listeria innocua Clip11262]
 gi|16414437|emb|CAC97166.1| lin1936 [Listeria innocua Clip11262]
          Length = 446

 Score = 37.0 bits (84), Expect = 0.95,   Method: Compositional matrix adjust.
 Identities = 25/85 (29%), Positives = 41/85 (48%), Gaps = 5/85 (5%)

Query: 72  IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
           +++G   RK  +D  ++  L ++      D  + ++LR  V +L     VP   I++E  
Sbjct: 49  LVYGTTQRKITLDYYLAPFLNKEP-----DNWVKNLLRMSVYQLTFLDKVPEHAILNEAG 103

Query: 132 CIAHDFFYGDEPKFINAVLDKVSRK 156
            IA D  +    KF+N VL  V RK
Sbjct: 104 DIAKDLGHQGVTKFVNGVLRNVIRK 128


>gi|300781095|ref|ZP_07090949.1| possible transcription antitermination protein NusB
           [Corynebacterium genitalium ATCC 33030]
 gi|300532802|gb|EFK53863.1| possible transcription antitermination protein NusB
           [Corynebacterium genitalium ATCC 33030]
          Length = 217

 Score = 37.0 bits (84), Expect = 0.96,   Method: Compositional matrix adjust.
 Identities = 21/87 (24%), Positives = 42/87 (48%)

Query: 67  EWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVI 126
           ++ R II G       ID  I   L++ W  +R+  +  +ILR    E++    V   + 
Sbjct: 54  DYTREIIAGAAAALDEIDNAIERFLSDNWELNRIPAVDRAILRVATWEILYNDEVEPPIS 113

Query: 127 ISEYVCIAHDFFYGDEPKFINAVLDKV 153
           I+  + ++ ++   +   +I+AVLD +
Sbjct: 114 IANAMEMSTEYAGDNASPYIHAVLDDI 140


>gi|313905220|ref|ZP_07838588.1| sun protein [Eubacterium cellulosolvens 6]
 gi|313469973|gb|EFR65307.1| sun protein [Eubacterium cellulosolvens 6]
          Length = 437

 Score = 37.0 bits (84), Expect = 0.97,   Method: Compositional matrix adjust.
 Identities = 24/94 (25%), Positives = 46/94 (48%), Gaps = 2/94 (2%)

Query: 65  DLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVE 124
           D  ++  +  G ++ +  +D +I+S    K   +R+  ++  ILR  V +L    SVP  
Sbjct: 43  DRAFYVRLTEGTLEYRLQLDYIINSY--SKTRTTRMKPMIREILRVAVYQLRYMDSVPDS 100

Query: 125 VIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEE 158
             ++E V +A    +     F+N VL  ++R+ E
Sbjct: 101 AAVNEAVRLAVRRGFSGLKGFVNGVLRSIAREPE 134


>gi|46908054|ref|YP_014443.1| sun protein [Listeria monocytogenes serotype 4b str. F2365]
 gi|47093059|ref|ZP_00230837.1| sun protein [Listeria monocytogenes str. 4b H7858]
 gi|254826136|ref|ZP_05231137.1| sun protein [Listeria monocytogenes FSL J1-194]
 gi|254852729|ref|ZP_05242077.1| sun protein [Listeria monocytogenes FSL R2-503]
 gi|254933294|ref|ZP_05266653.1| sun protein [Listeria monocytogenes HPB2262]
 gi|300763865|ref|ZP_07073862.1| sun protein [Listeria monocytogenes FSL N1-017]
 gi|46881324|gb|AAT04620.1| sun protein [Listeria monocytogenes serotype 4b str. F2365]
 gi|47018560|gb|EAL09315.1| sun protein [Listeria monocytogenes str. 4b H7858]
 gi|258606052|gb|EEW18660.1| sun protein [Listeria monocytogenes FSL R2-503]
 gi|293584854|gb|EFF96886.1| sun protein [Listeria monocytogenes HPB2262]
 gi|293595376|gb|EFG03137.1| sun protein [Listeria monocytogenes FSL J1-194]
 gi|300515601|gb|EFK42651.1| sun protein [Listeria monocytogenes FSL N1-017]
 gi|332312263|gb|EGJ25358.1| Ribosomal RNA small subunit methyltransferase B [Listeria
           monocytogenes str. Scott A]
          Length = 444

 Score = 37.0 bits (84), Expect = 0.98,   Method: Compositional matrix adjust.
 Identities = 25/85 (29%), Positives = 41/85 (48%), Gaps = 5/85 (5%)

Query: 72  IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
           +++G   RK  +D  ++  L ++      D  + ++LR  V +L     VP   I++E  
Sbjct: 49  LVYGTTQRKITLDYYLAPFLNKEP-----DNWVKNLLRMSVYQLTFLDKVPEHAILNEAG 103

Query: 132 CIAHDFFYGDEPKFINAVLDKVSRK 156
            IA D  +    KF+N VL  V RK
Sbjct: 104 DIAKDLGHQGVTKFVNGVLRNVIRK 128


>gi|315282824|ref|ZP_07871146.1| ribosomal RNA small subunit methyltransferase B [Listeria marthii
           FSL S4-120]
 gi|313613532|gb|EFR87354.1| ribosomal RNA small subunit methyltransferase B [Listeria marthii
           FSL S4-120]
          Length = 400

 Score = 37.0 bits (84), Expect = 0.99,   Method: Compositional matrix adjust.
 Identities = 25/85 (29%), Positives = 41/85 (48%), Gaps = 5/85 (5%)

Query: 72  IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
           +++G   RK  +D  ++  L ++      D  + ++LR  V +L     VP   I++E  
Sbjct: 5   LVYGTTQRKITLDYYLAPFLNKEP-----DNWVKNLLRMSVYQLTFLDKVPEHAILNEAG 59

Query: 132 CIAHDFFYGDEPKFINAVLDKVSRK 156
            IA D  +    KF+N VL  V RK
Sbjct: 60  DIAKDLGHQGVTKFVNGVLRNVIRK 84


>gi|290893049|ref|ZP_06556038.1| sun protein [Listeria monocytogenes FSL J2-071]
 gi|290557409|gb|EFD90934.1| sun protein [Listeria monocytogenes FSL J2-071]
 gi|313608142|gb|EFR84195.1| ribosomal RNA small subunit methyltransferase B [Listeria
           monocytogenes FSL F2-208]
          Length = 444

 Score = 37.0 bits (84), Expect = 0.99,   Method: Compositional matrix adjust.
 Identities = 25/85 (29%), Positives = 41/85 (48%), Gaps = 5/85 (5%)

Query: 72  IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
           +++G   RK  +D  ++  L ++      D  + ++LR  V +L     VP   I++E  
Sbjct: 49  LVYGTTQRKITLDYYLAPFLNKEP-----DNWVKNLLRMSVYQLTFLDKVPEHAILNEAG 103

Query: 132 CIAHDFFYGDEPKFINAVLDKVSRK 156
            IA D  +    KF+N VL  V RK
Sbjct: 104 DIAKDLGHQGVTKFVNGVLRNVIRK 128


>gi|257066525|ref|YP_003152781.1| NusB antitermination factor [Anaerococcus prevotii DSM 20548]
 gi|256798405|gb|ACV29060.1| NusB antitermination factor [Anaerococcus prevotii DSM 20548]
          Length = 127

 Score = 37.0 bits (84), Expect = 1.00,   Method: Compositional matrix adjust.
 Identities = 28/94 (29%), Positives = 47/94 (50%), Gaps = 3/94 (3%)

Query: 64  VDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPV 123
            D ++ R  I   ++    ID  ++S L  K    RL  +L SIL   + E+     +PV
Sbjct: 35  TDEDFVRKSISSFLNNFSSIDEKLTSNLDSKRK--RLSKVLRSILYLSINEMY-FMDIPV 91

Query: 124 EVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKE 157
            V I+E V +A  +   D+ K +N++L  + RK+
Sbjct: 92  SVSINEAVNLAKKYSDEDDYKLVNSILGSIVRKD 125


>gi|313637331|gb|EFS02816.1| ribosomal RNA small subunit methyltransferase B [Listeria seeligeri
           FSL S4-171]
          Length = 446

 Score = 37.0 bits (84), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 25/85 (29%), Positives = 41/85 (48%), Gaps = 5/85 (5%)

Query: 72  IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
           +++G   RK  +D  ++  L ++      D  + ++LR  V +L     VP   I++E  
Sbjct: 49  LVYGTTQRKITLDYYLAPFLNKEP-----DNWVKNLLRMSVYQLTFLDKVPEHAILNEAG 103

Query: 132 CIAHDFFYGDEPKFINAVLDKVSRK 156
            IA D  +    KF+N VL  V RK
Sbjct: 104 DIAKDLGHQGVTKFVNGVLRNVIRK 128


>gi|313665137|ref|YP_004047008.1| ribosomal RNA small subunit methyltransferase B [Mycoplasma leachii
           PG50]
 gi|312949207|gb|ADR23803.1| ribosomal RNA small subunit methyltransferase B [Mycoplasma leachii
           PG50]
          Length = 423

 Score = 37.0 bits (84), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 25/91 (27%), Positives = 47/91 (51%), Gaps = 5/91 (5%)

Query: 65  DLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVE 124
           D ++   ++HGV+  K H+D L++  +  K +   L +IL       + ++I  +S+P  
Sbjct: 37  DKDFVFNLVHGVISNKIHLDYLLAKLIDVKKTSIDLQIILL----ISLYQMIYLNSIPNY 92

Query: 125 VIISEYVCIAHDFFYGDEPKFINAVLDKVSR 155
            I++E V +        +  FINA+L+K  R
Sbjct: 93  AIVNESVNLIKT-TSQKQANFINAILNKFLR 122


>gi|289435165|ref|YP_003465037.1| sun protein [Listeria seeligeri serovar 1/2b str. SLCC3954]
 gi|289171409|emb|CBH27953.1| sun protein [Listeria seeligeri serovar 1/2b str. SLCC3954]
          Length = 446

 Score = 37.0 bits (84), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 25/85 (29%), Positives = 41/85 (48%), Gaps = 5/85 (5%)

Query: 72  IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
           +++G   RK  +D  ++  L ++      D  + ++LR  V +L     VP   I++E  
Sbjct: 49  LVYGTTQRKITLDYYLAPFLNKEP-----DNWVKNLLRMSVYQLTFLDKVPEHAILNEAG 103

Query: 132 CIAHDFFYGDEPKFINAVLDKVSRK 156
            IA D  +    KF+N VL  V RK
Sbjct: 104 DIAKDLGHQGVTKFVNGVLRNVIRK 128


>gi|168019738|ref|XP_001762401.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162686479|gb|EDQ72868.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 465

 Score = 37.0 bits (84), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 23/87 (26%), Positives = 45/87 (51%), Gaps = 2/87 (2%)

Query: 73  IHGVMDRKQHIDLLISSCLTEK-WSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
           + G++  K+++D LI S   +    + R++ +L  ILR G+ ELI+   +P   +++E V
Sbjct: 51  VAGIVRWKRYLDFLIFSFFKQDVRDYDRMEPLLRQILRVGLYELIKLE-MPPHAVLNETV 109

Query: 132 CIAHDFFYGDEPKFINAVLDKVSRKEE 158
            +A           +N +L  V R ++
Sbjct: 110 QLAKVALRAGAGNLVNGLLRDVVRHQD 136


>gi|86605070|ref|YP_473833.1| transcription antitermination protein NusB [Synechococcus sp.
           JA-3-3Ab]
 gi|119390839|sp|Q2JQT6|NUSB_SYNJA RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|86553612|gb|ABC98570.1| transcription antitermination factor NusB [Synechococcus sp.
           JA-3-3Ab]
          Length = 288

 Score = 37.0 bits (84), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 23/74 (31%), Positives = 36/74 (48%), Gaps = 1/74 (1%)

Query: 80  KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139
           K+ ID  +   L   W   R+  I   ILR  V+E+    S P +V I+E V +A  +  
Sbjct: 195 KEAIDARLQGVLV-GWQLKRVGRIERDILRLAVVEMEILRSSPDKVAINEAVELAKKYGD 253

Query: 140 GDEPKFINAVLDKV 153
            +   F+N VL ++
Sbjct: 254 PEAAAFVNGVLRRL 267


>gi|332300781|ref|YP_004442702.1| NusB antitermination factor [Porphyromonas asaccharolytica DSM
           20707]
 gi|332177844|gb|AEE13534.1| NusB antitermination factor [Porphyromonas asaccharolytica DSM
           20707]
          Length = 347

 Score = 37.0 bits (84), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 19/74 (25%), Positives = 39/74 (52%), Gaps = 1/74 (1%)

Query: 80  KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139
           ++  D +++  L + W   R+ ++   ++   V E + C  + + V I+EY+ +A  +  
Sbjct: 263 REDYDAMLTPRL-DNWEQDRVALVDMILMEMAVAEALNCPDIALVVTINEYIELAKVYDN 321

Query: 140 GDEPKFINAVLDKV 153
                FINAVLD++
Sbjct: 322 SKSASFINAVLDRL 335


>gi|313623277|gb|EFR93521.1| ribosomal RNA small subunit methyltransferase B [Listeria innocua
           FSL J1-023]
          Length = 446

 Score = 37.0 bits (84), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 25/85 (29%), Positives = 41/85 (48%), Gaps = 5/85 (5%)

Query: 72  IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
           +++G   RK  +D  ++  L ++      D  + ++LR  V +L     VP   I++E  
Sbjct: 49  LVYGTTQRKITLDYYLAPFLNKEP-----DNWVKNLLRMSVYQLTFLDKVPEHAILNEAG 103

Query: 132 CIAHDFFYGDEPKFINAVLDKVSRK 156
            IA D  +    KF+N VL  V RK
Sbjct: 104 DIAKDLGHQGVTKFVNGVLRNVIRK 128


>gi|255522012|ref|ZP_05389249.1| sun protein [Listeria monocytogenes FSL J1-175]
          Length = 444

 Score = 37.0 bits (84), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 25/85 (29%), Positives = 41/85 (48%), Gaps = 5/85 (5%)

Query: 72  IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
           +++G   RK  +D  ++  L ++      D  + ++LR  V +L     VP   I++E  
Sbjct: 49  LVYGTTQRKITLDYYLAPFLNKEP-----DNWVKNLLRMSVYQLTFLDKVPEHAILNEAG 103

Query: 132 CIAHDFFYGDEPKFINAVLDKVSRK 156
            IA D  +    KF+N VL  V RK
Sbjct: 104 DIAKDLGHQGVTKFVNGVLRNVIRK 128


>gi|253702184|ref|YP_003023373.1| sun protein [Geobacter sp. M21]
 gi|251777034|gb|ACT19615.1| sun protein [Geobacter sp. M21]
          Length = 448

 Score = 36.6 bits (83), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 25/90 (27%), Positives = 45/90 (50%), Gaps = 9/90 (10%)

Query: 72  IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
           +++GV+ R+  +D +IS     K    +L++ +  +LR G+ +      VPV   ++E V
Sbjct: 48  LVYGVLRRQGTLDYIISQF--SKQRPEKLELFVRLLLRLGIYQCFFLDRVPVSAAVNETV 105

Query: 132 CIAHDFFYGDEPK---FINAVLDKVSRKEE 158
            +A +      P+   FINAVL    R  +
Sbjct: 106 NLAKEL----APRASGFINAVLRNADRGRD 131


>gi|147678123|ref|YP_001212338.1| tRNA and rRNA cytosine-C5-methylases [Pelotomaculum
           thermopropionicum SI]
 gi|146274220|dbj|BAF59969.1| tRNA and rRNA cytosine-C5-methylases [Pelotomaculum
           thermopropionicum SI]
          Length = 456

 Score = 36.6 bits (83), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 19/63 (30%), Positives = 31/63 (49%)

Query: 94  KWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKV 153
           K   S     + +ILR GV +L+    VP   + +E   +A  + +    KF+N VL  +
Sbjct: 71  KQPLSSQSRTVLNILRLGVYQLMFMDRVPPSAVCNEGAELARKYGHAGTVKFVNGVLRNI 130

Query: 154 SRK 156
           SR+
Sbjct: 131 SRR 133


>gi|197119890|ref|YP_002140317.1| 16S rRNA (5-methyl-C967)-methyltransferase [Geobacter bemidjiensis
           Bem]
 gi|197089250|gb|ACH40521.1| 16S rRNA (5-methyl-C967)-methyltransferase [Geobacter bemidjiensis
           Bem]
          Length = 448

 Score = 36.6 bits (83), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 25/90 (27%), Positives = 45/90 (50%), Gaps = 9/90 (10%)

Query: 72  IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
           +++GV+ R+  +D +IS     K    +L++ +  +LR G+ +      VPV   ++E V
Sbjct: 48  LVYGVLRRQGTLDYIISQF--SKQRPEKLELFVRLLLRLGIYQCFFLDRVPVSAAVNETV 105

Query: 132 CIAHDFFYGDEPK---FINAVLDKVSRKEE 158
            +A +      P+   FINAVL    R  +
Sbjct: 106 NLAKEL----APRASGFINAVLRNADRGRD 131


>gi|331703221|ref|YP_004399908.1| Sun family protein [Mycoplasma mycoides subsp. capri LC str. 95010]
 gi|328801776|emb|CBW53929.1| Sun family protein [Mycoplasma mycoides subsp. capri LC str. 95010]
          Length = 423

 Score = 36.6 bits (83), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 25/91 (27%), Positives = 47/91 (51%), Gaps = 5/91 (5%)

Query: 65  DLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVE 124
           D ++   ++HGV+  K H+D L++  +  K +   L +IL       + ++I  +S+P  
Sbjct: 37  DKDFVFNLVHGVISNKIHLDYLLAKLIDVKKTSIDLQIILL----ISLYQMIYLNSIPNY 92

Query: 125 VIISEYVCIAHDFFYGDEPKFINAVLDKVSR 155
            I++E V +        +  FINA+L+K  R
Sbjct: 93  AIVNESVNLIKT-TSQKQANFINAILNKFLR 122


>gi|160915119|ref|ZP_02077332.1| hypothetical protein EUBDOL_01127 [Eubacterium dolichum DSM 3991]
 gi|158432918|gb|EDP11207.1| hypothetical protein EUBDOL_01127 [Eubacterium dolichum DSM 3991]
          Length = 126

 Score = 36.6 bits (83), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 21/67 (31%), Positives = 34/67 (50%), Gaps = 1/67 (1%)

Query: 87  ISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFI 146
           I   L + W+F RL  +  +IL     EL +  + P  ++I E V +A  +   D  + I
Sbjct: 61  IDETLRDDWTFERLGYVEKAILLMAACEL-DFETAPKAIVIDEAVNLAKKYCDEDTYRLI 119

Query: 147 NAVLDKV 153
           N VLD++
Sbjct: 120 NGVLDRL 126


>gi|167747003|ref|ZP_02419130.1| hypothetical protein ANACAC_01715 [Anaerostipes caccae DSM 14662]
 gi|317471818|ref|ZP_07931155.1| transcription antitermination factor NusB [Anaerostipes sp.
           3_2_56FAA]
 gi|167653963|gb|EDR98092.1| hypothetical protein ANACAC_01715 [Anaerostipes caccae DSM 14662]
 gi|316900709|gb|EFV22686.1| transcription antitermination factor NusB [Anaerostipes sp.
           3_2_56FAA]
          Length = 131

 Score = 36.6 bits (83), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 25/110 (22%), Positives = 49/110 (44%), Gaps = 1/110 (0%)

Query: 45  ETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMIL 104
           E +   AD        + + + ++ +     ++ R + ID  I+   ++ W   RL    
Sbjct: 23  EEFEAQADLYFSNNDFFRNKEKDYIKTRTLDMLSRLEEIDQKINEN-SKGWDIKRLGKAE 81

Query: 105 CSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVS 154
            +ILR  V E++    +P +V I+E V ++  +       FIN +L K+ 
Sbjct: 82  LTILRIAVYEIMFDEDIPDKVAINEAVELSKTYCNEKAASFINGILGKIG 131


>gi|317498698|ref|ZP_07956990.1| ribosomal RNA small subunit methyltransferase B [Lachnospiraceae
           bacterium 5_1_63FAA]
 gi|316894040|gb|EFV16230.1| ribosomal RNA small subunit methyltransferase B [Lachnospiraceae
           bacterium 5_1_63FAA]
          Length = 447

 Score = 36.6 bits (83), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 22/94 (23%), Positives = 45/94 (47%), Gaps = 2/94 (2%)

Query: 65  DLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVE 124
           D  +F  ++ G ++R+  ID +       K    +   ++ ++LR G+ +++    VP  
Sbjct: 40  DRAFFTRLVEGTLERQITIDYVADQF--SKTKIRKCKPLIRALLRMGIYQILYMDQVPDS 97

Query: 125 VIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEE 158
              +E V +A    +     F+N VL  +SRK++
Sbjct: 98  AACNEAVKLAKKRGFSRLSGFVNGVLRNISRKKD 131


>gi|239939911|ref|ZP_04691848.1| putative RNA-binding Sun protein [Streptomyces roseosporus NRRL
           15998]
 gi|239986397|ref|ZP_04707061.1| putative RNA-binding Sun protein [Streptomyces roseosporus NRRL
           11379]
 gi|291443343|ref|ZP_06582733.1| RNA-binding Sun family protein [Streptomyces roseosporus NRRL
           15998]
 gi|291346290|gb|EFE73194.1| RNA-binding Sun family protein [Streptomyces roseosporus NRRL
           15998]
          Length = 477

 Score = 36.6 bits (83), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 21/83 (25%), Positives = 41/83 (49%), Gaps = 3/83 (3%)

Query: 72  IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
           +++G + R+   D ++++C+        +D  +  +L  GV +L+    +P    +S  V
Sbjct: 67  LVYGTLRRQGTYDAIVAACIDR--PLREVDPPVLDVLNMGVHQLLGTR-IPTHAAVSASV 123

Query: 132 CIAHDFFYGDEPKFINAVLDKVS 154
            +A         KF+NAVL KV+
Sbjct: 124 ELARVVLGEGRAKFVNAVLRKVT 146


>gi|167768546|ref|ZP_02440599.1| hypothetical protein CLOSS21_03105 [Clostridium sp. SS2/1]
 gi|167710070|gb|EDS20649.1| hypothetical protein CLOSS21_03105 [Clostridium sp. SS2/1]
 gi|291560508|emb|CBL39308.1| ribosomal RNA small subunit methyltransferase RsmB
           [butyrate-producing bacterium SSC/2]
          Length = 447

 Score = 36.6 bits (83), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 22/94 (23%), Positives = 45/94 (47%), Gaps = 2/94 (2%)

Query: 65  DLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVE 124
           D  +F  ++ G ++R+  ID +       K    +   ++ ++LR G+ +++    VP  
Sbjct: 40  DRAFFTRLVEGTLERQITIDYVADQF--SKTKIRKCKPLIRALLRMGIYQILYMDQVPDS 97

Query: 125 VIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEE 158
              +E V +A    +     F+N VL  +SRK++
Sbjct: 98  AACNEAVKLAKKRGFSRLSGFVNGVLRNISRKKD 131


>gi|309810728|ref|ZP_07704536.1| putative ribosomal RNA small subunit methyltransferase B
           [Dermacoccus sp. Ellin185]
 gi|308435359|gb|EFP59183.1| putative ribosomal RNA small subunit methyltransferase B
           [Dermacoccus sp. Ellin185]
          Length = 489

 Score = 36.6 bits (83), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 22/83 (26%), Positives = 42/83 (50%), Gaps = 3/83 (3%)

Query: 75  GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134
           G + R+   D +I +      + S++D ++ ++LR GV +++    VPV    SE V +A
Sbjct: 66  GTIRRQGFYDRVIETG--SGRAPSQIDPVVLAVLRLGVHQILSMR-VPVHAATSETVALA 122

Query: 135 HDFFYGDEPKFINAVLDKVSRKE 157
            +        F+NAVL +   ++
Sbjct: 123 REHAGSGAAGFVNAVLRRAGERD 145


>gi|296133297|ref|YP_003640544.1| sun protein [Thermincola sp. JR]
 gi|296031875|gb|ADG82643.1| sun protein [Thermincola potens JR]
          Length = 451

 Score = 36.6 bits (83), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 31/147 (21%), Positives = 63/147 (42%), Gaps = 22/147 (14%)

Query: 19  ARLAAVQALYQIDIIGC----STTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74
           AR  A++ +YQ+D  G     +  +++ +Y+  +                D  +   +++
Sbjct: 4   ARKLALEVIYQVDREGAYSNIALNKVLEKYQPEK---------------KDRAFITELVY 48

Query: 75  GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134
           G + R   +D +    ++       L   + +I+R G+ ++     VP     +E V +A
Sbjct: 49  GTLKRLNTLDWIAGRFVSR--PLDSLTPWIRNIIRMGIYQIFFMDKVPNSAACNESVNLA 106

Query: 135 HDFFYGDEPKFINAVLDKVSR-KEEIK 160
             F +    KF+N VL  V R K+ +K
Sbjct: 107 RKFGHQGTVKFVNGVLRNVVRHKDRVK 133


>gi|42560767|ref|NP_975218.1| Sun family protein [Mycoplasma mycoides subsp. mycoides SC str.
           PG1]
 gi|42492263|emb|CAE76860.1| Sun family protein [Mycoplasma mycoides subsp. mycoides SC str.
           PG1]
          Length = 432

 Score = 36.6 bits (83), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 24/84 (28%), Positives = 44/84 (52%), Gaps = 5/84 (5%)

Query: 72  IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
           ++HGV+  K H+D L++  +  K +   L +IL       + ++I  +S+P   I++E V
Sbjct: 53  LVHGVISNKIHLDYLLTKLIDVKKTSIDLQIILL----ISLYQMIYLNSIPNYAIVNESV 108

Query: 132 CIAHDFFYGDEPKFINAVLDKVSR 155
            +        +  FINA+L+K  R
Sbjct: 109 NLIKT-TSQKQANFINAILNKFLR 131


>gi|313664987|ref|YP_004046858.1| transcription antitermination factor NusB [Mycoplasma leachii PG50]
 gi|312949412|gb|ADR24008.1| transcription antitermination factor NusB [Mycoplasma leachii PG50]
          Length = 132

 Score = 36.6 bits (83), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 26/81 (32%), Positives = 44/81 (54%), Gaps = 11/81 (13%)

Query: 81  QHIDLL--ISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVC----IA 134
           + +DL+  I+  ++  W + R+  ++ +IL  G  E++   + P  V I+E V     I 
Sbjct: 57  KQVDLINHININISLNWKWDRIPAVIRAILIVGTYEILYTDT-PKPVTINEMVNYVKEIE 115

Query: 135 HDFFYGDEPKFINAVLDKVSR 155
            DF Y    KF+NAVLDK+ +
Sbjct: 116 PDFDY----KFVNAVLDKIIK 132


>gi|83319809|ref|YP_424196.1| rRNA methyltransferase RsmB (sun protein), putative [Mycoplasma
           capricolum subsp. capricolum ATCC 27343]
 gi|83283695|gb|ABC01627.1| rRNA methyltransferase RsmB (sun protein), putative [Mycoplasma
           capricolum subsp. capricolum ATCC 27343]
          Length = 428

 Score = 36.6 bits (83), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 25/91 (27%), Positives = 47/91 (51%), Gaps = 5/91 (5%)

Query: 65  DLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVE 124
           D ++   ++HGV+  K H+D L++  +  K +   L +IL       + ++I  +S+P  
Sbjct: 46  DKDFVFNLVHGVISNKIHLDYLLAKLIDVKKTSIDLQVILL----ISLYQMIYLNSIPNY 101

Query: 125 VIISEYVCIAHDFFYGDEPKFINAVLDKVSR 155
            I++E V +        +  FINA+L+K  R
Sbjct: 102 AIVNESVNLIKT-TSQKQANFINAILNKFLR 131


>gi|32490464|dbj|BAC79124.1| putative transcription termination protein [Streptomyces griseus]
          Length = 66

 Score = 36.6 bits (83), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 18/41 (43%), Positives = 22/41 (53%)

Query: 108 LRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINA 148
           LR G  ELI     P  V+I E V +A +F   D P F+NA
Sbjct: 19  LRLGAYELIWMDGTPDAVVIDEAVQLAKEFSTDDSPSFVNA 59


>gi|15605713|ref|NP_213090.1| transcription antitermination protein NusB [Aquifex aeolicus VF5]
 gi|7387972|sp|O66530|NUSB_AQUAE RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|168177029|pdb|2JR0|A Chain A, Solution Structure Of Nusb From Aquifex Aeolicus
 gi|2982871|gb|AAC06491.1| transcription termination NusB [Aquifex aeolicus VF5]
          Length = 148

 Score = 36.6 bits (83), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 35/139 (25%), Positives = 60/139 (43%), Gaps = 12/139 (8%)

Query: 12  LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71
           + +R+G AR  A   LY+ D+ G +  E+  E        +  +  +  Y     E+ + 
Sbjct: 1   MRYRKG-ARDTAFLVLYRWDLRGENPGELFKE-----VVEEKNIKNKDAY-----EYAKK 49

Query: 72  IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
           ++   +   + ID +I   L + WS  RL  +  + LR GV ELI   S     +  + V
Sbjct: 50  LVDTAVRHIEEIDSIIEKHL-KGWSIDRLGYVERNALRLGVAELIFLKSKEPGRVFIDIV 108

Query: 132 CIAHDFFYGDEPKFINAVL 150
            +   +      KF+N VL
Sbjct: 109 DLVKKYADEKAGKFVNGVL 127


>gi|320528399|ref|ZP_08029561.1| putative transcription antitermination factor NusB [Solobacterium
           moorei F0204]
 gi|320131313|gb|EFW23881.1| putative transcription antitermination factor NusB [Solobacterium
           moorei F0204]
          Length = 150

 Score = 36.6 bits (83), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 23/65 (35%), Positives = 33/65 (50%), Gaps = 1/65 (1%)

Query: 87  ISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFI 146
           I S L + WS+ RL +I  +IL  G  E  +       VII + V +A  +   D  K +
Sbjct: 85  IDSVLKKGWSYERLGLIEKAILLNGCAEF-DLKKTESAVIIDQSVQLAKRYCDSDTYKLV 143

Query: 147 NAVLD 151
           N+VLD
Sbjct: 144 NSVLD 148


>gi|26553613|ref|NP_757547.1| transcription termination factor N-utilization substance protein B
           [Mycoplasma penetrans HF-2]
 gi|26453619|dbj|BAC43951.1| transcription termination factor N-utilization substance protein B
           [Mycoplasma penetrans HF-2]
          Length = 149

 Score = 36.6 bits (83), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 23/84 (27%), Positives = 42/84 (50%), Gaps = 5/84 (5%)

Query: 72  IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVE--VIISE 129
           +I   +  KQ+I   I   L E+W   RL+ +  SI+     E    H++ ++  +II +
Sbjct: 66  VIAFYIKNKQNIKSRIKPLLKEEWEIDRLNKVDLSIIMEAFCEF---HTLDIDRKIIIDQ 122

Query: 130 YVCIAHDFFYGDEPKFINAVLDKV 153
            +  +  +   +  KFIN +LDK+
Sbjct: 123 AIVTSKRYSENNSYKFINFILDKL 146


>gi|163785218|ref|ZP_02179895.1| transcription antitermination protein NusB [Hydrogenivirga sp.
           128-5-R1-1]
 gi|159879514|gb|EDP73341.1| transcription antitermination protein NusB [Hydrogenivirga sp.
           128-5-R1-1]
          Length = 146

 Score = 36.6 bits (83), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 41/146 (28%), Positives = 63/146 (43%), Gaps = 20/146 (13%)

Query: 16  RGIARLAAVQALYQIDI-----IGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFR 70
           R  AR  A++ LY  DI     I  +  E IS             D+        L++  
Sbjct: 6   RKKAREIALKVLYAYDIDKEKDINETLEETIS-------------DIRQNLSEKTLKYAY 52

Query: 71  VIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEY 130
            II+GV +    ID +I S L + W   RL  I  ++LR G  EL+       + +  + 
Sbjct: 53  QIINGVYEYIDEIDNIIQSHLKD-WRLDRLGYIERALLRIGTYELVFSDIPDKKRVFMDI 111

Query: 131 VCIAHDFFYGDEP-KFINAVLDKVSR 155
           + IA  +   ++  KFIN VL K+ +
Sbjct: 112 LDIAKCYNLDEKALKFINGVLSKIYK 137


>gi|167747881|ref|ZP_02420008.1| hypothetical protein ANACAC_02610 [Anaerostipes caccae DSM 14662]
 gi|167652703|gb|EDR96832.1| hypothetical protein ANACAC_02610 [Anaerostipes caccae DSM 14662]
          Length = 448

 Score = 36.6 bits (83), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 23/94 (24%), Positives = 46/94 (48%), Gaps = 2/94 (2%)

Query: 65  DLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVE 124
           D  +F  +  G ++R+  ID +I   L  K    ++  ++ S+LR G  +++    +P  
Sbjct: 40  DRAFFTRLCQGTLERRLTIDYVID--LYSKTKVRKMKPLVRSLLRMGACQILFMDHIPDS 97

Query: 125 VIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEE 158
              +E V +A    +     F+N VL  +SR+++
Sbjct: 98  AACNECVKLAKKRGFSKLSGFVNGVLRTISRQKQ 131


>gi|218961232|ref|YP_001741007.1| putative 16S rRNA m5C967 methyltransferase,
           S-adenosyl-L-methionine-dependent [Candidatus
           Cloacamonas acidaminovorans]
 gi|167729889|emb|CAO80801.1| putative 16S rRNA m5C967 methyltransferase,
           S-adenosyl-L-methionine-dependent [Candidatus
           Cloacamonas acidaminovorans]
          Length = 438

 Score = 36.6 bits (83), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 23/95 (24%), Positives = 46/95 (48%), Gaps = 1/95 (1%)

Query: 65  DLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVE 124
           D   F  ++ GV+     +D ++   + +K  ++  D+ +  +L  G+ +L+  +S+P  
Sbjct: 38  DPALFYNLVKGVIKLYLKLDYILQQYVDKK-KYTDTDIKIKVLLYMGLYQLLYLNSIPDY 96

Query: 125 VIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEI 159
             ++E V +A   F      F+NAVL    R  E+
Sbjct: 97  AAVNETVELAKTLFNPQVADFVNAVLRNYLRNPEV 131


>gi|119485390|ref|ZP_01619718.1| transcription antitermination protein NusB [Lyngbya sp. PCC 8106]
 gi|119457146|gb|EAW38272.1| transcription antitermination protein NusB [Lyngbya sp. PCC 8106]
          Length = 210

 Score = 36.6 bits (83), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 25/82 (30%), Positives = 43/82 (52%), Gaps = 2/82 (2%)

Query: 72  IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
           I+  +  R+  ID +++  L + W  +RL  I   ILR  V EL+   +   +V ++E +
Sbjct: 119 ILTEIHARRTEIDEILNQALVD-WQINRLPRIDRDILRIAVTELLYLGTQE-QVALNEAI 176

Query: 132 CIAHDFFYGDEPKFINAVLDKV 153
            +A  +   D  +FIN VL +V
Sbjct: 177 ELAKRYSDEDSYRFINGVLRRV 198


>gi|301321426|gb|ADK70069.1| ribosomal RNA small subunit methyltransferase B [Mycoplasma
           mycoides subsp. mycoides SC str. Gladysdale]
          Length = 423

 Score = 36.2 bits (82), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 24/84 (28%), Positives = 44/84 (52%), Gaps = 5/84 (5%)

Query: 72  IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
           ++HGV+  K H+D L++  +  K +   L +IL       + ++I  +S+P   I++E V
Sbjct: 44  LVHGVISNKIHLDYLLTKLIDVKKTSIDLQIILL----ISLYQMIYLNSIPNYAIVNESV 99

Query: 132 CIAHDFFYGDEPKFINAVLDKVSR 155
            +        +  FINA+L+K  R
Sbjct: 100 NLIKT-TSQKQANFINAILNKFLR 122


>gi|167760433|ref|ZP_02432560.1| hypothetical protein CLOSCI_02807 [Clostridium scindens ATCC 35704]
 gi|167661932|gb|EDS06062.1| hypothetical protein CLOSCI_02807 [Clostridium scindens ATCC 35704]
          Length = 436

 Score = 36.2 bits (82), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 23/87 (26%), Positives = 43/87 (49%), Gaps = 2/87 (2%)

Query: 72  IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
           +++G ++    ID +I+     K    ++  ++  I+R+ V +L    SVP   +++E V
Sbjct: 50  VVNGTLEHMIEIDYIINQF--SKVKVQKMKPVIRMIIRSAVYQLKYMDSVPDSAVLNEAV 107

Query: 132 CIAHDFFYGDEPKFINAVLDKVSRKEE 158
            +A    +     F+N VL  VSR  E
Sbjct: 108 KLASKRGFSTLKGFVNGVLRSVSRNLE 134


>gi|15644260|ref|NP_229312.1| sun protein [Thermotoga maritima MSB8]
 gi|4982078|gb|AAD36579.1|AE001799_11 sun protein [Thermotoga maritima MSB8]
          Length = 431

 Score = 36.2 bits (82), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 31/122 (25%), Positives = 61/122 (50%), Gaps = 8/122 (6%)

Query: 40  IISEYETYRFCADTELD-VESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFS 98
           ++ +YE  +F +  ++D V S     D  +F+ ++ GV+ +++ +D  I+  L +K    
Sbjct: 12  LLRKYEKEKFISREDVDSVLSFLDDRDRRFFKELVWGVVRKEELLDWYINQLLKKK---- 67

Query: 99  RLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEE 158
            +   +   LR G  +L+  +SVP    +SE V +  +  +    K +NAVL ++    E
Sbjct: 68  DIPPAVRVALRMGAYQLLFMNSVPDYAAVSETVKLVKNENFK---KLVNAVLRRLRTVPE 124

Query: 159 IK 160
            K
Sbjct: 125 PK 126


>gi|329938919|ref|ZP_08288293.1| ribosomal RNA small subunit methyltransferase B [Streptomyces
           griseoaurantiacus M045]
 gi|329301804|gb|EGG45697.1| ribosomal RNA small subunit methyltransferase B [Streptomyces
           griseoaurantiacus M045]
          Length = 472

 Score = 36.2 bits (82), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 21/84 (25%), Positives = 41/84 (48%), Gaps = 3/84 (3%)

Query: 72  IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
           +++G + R+   D ++++C+        +D  +  +L  G  +L+    +P    +S  V
Sbjct: 69  LVYGTLRRQGTYDAILAACVDR--PLREVDPPVLDVLSLGAHQLLGTR-IPTHAAVSASV 125

Query: 132 CIAHDFFYGDEPKFINAVLDKVSR 155
            +A         KF+NAVL KV+R
Sbjct: 126 ELARVVLGDGRAKFVNAVLRKVAR 149


>gi|210622490|ref|ZP_03293195.1| hypothetical protein CLOHIR_01143 [Clostridium hiranonis DSM 13275]
 gi|210154203|gb|EEA85209.1| hypothetical protein CLOHIR_01143 [Clostridium hiranonis DSM 13275]
          Length = 173

 Score = 36.2 bits (82), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 26/100 (26%), Positives = 51/100 (51%), Gaps = 4/100 (4%)

Query: 51  ADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRA 110
            + E+D+E+   +++L++   +     ++ + ID  I     + WS   +  +  +ILR 
Sbjct: 70  TEEEIDLEN---YLNLDYVSNVCKIYEEKHEEIDEAIDK-YAKGWSIMTMPKVDVAILRL 125

Query: 111 GVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVL 150
            + E+    S+P +V I+E + +A  +     PKFIN VL
Sbjct: 126 AIAEIGFIDSIPEKVSINEAIEMAKMYCDDKSPKFINGVL 165


>gi|29833420|ref|NP_828054.1| RNA-binding Sun protein [Streptomyces avermitilis MA-4680]
 gi|29610543|dbj|BAC74589.1| putative RNA-binding Sun protein [Streptomyces avermitilis MA-4680]
          Length = 476

 Score = 36.2 bits (82), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 22/86 (25%), Positives = 43/86 (50%), Gaps = 3/86 (3%)

Query: 72  IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
           +++G + R+   D +I++C+        +D  +  +L  GV +L+    +P    +S  V
Sbjct: 69  LVYGTLRRQGTYDAVIAACVDR--PLREVDPPVLDVLSLGVHQLLGTR-IPTHAAVSASV 125

Query: 132 CIAHDFFYGDEPKFINAVLDKVSRKE 157
            +A         KF+NAVL KV++ +
Sbjct: 126 ELARVVLGDGRAKFVNAVLRKVAQHD 151


>gi|260438372|ref|ZP_05792188.1| transcription antitermination factor NusB [Butyrivibrio crossotus
           DSM 2876]
 gi|292808958|gb|EFF68163.1| transcription antitermination factor NusB [Butyrivibrio crossotus
           DSM 2876]
          Length = 142

 Score = 36.2 bits (82), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 27/76 (35%), Positives = 39/76 (51%), Gaps = 5/76 (6%)

Query: 82  HIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGD 141
            ID +IS   +E W   R+     SI+R  V E++   ++   V ISE V +A    YGD
Sbjct: 70  EIDKVISEK-SEGWDIDRIGKAELSIMRIAVYEILYDDNIENAVSISEAVKLAKK--YGD 126

Query: 142 EPK--FINAVLDKVSR 155
           E    F+N VL K+ +
Sbjct: 127 EKAYGFVNGVLAKIVK 142


>gi|223986295|ref|ZP_03636307.1| hypothetical protein HOLDEFILI_03617 [Holdemania filiformis DSM
           12042]
 gi|223961734|gb|EEF66234.1| hypothetical protein HOLDEFILI_03617 [Holdemania filiformis DSM
           12042]
          Length = 115

 Score = 36.2 bits (82), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 25/87 (28%), Positives = 45/87 (51%), Gaps = 2/87 (2%)

Query: 67  EWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVI 126
           ++ R++I   +D +      I+  L + WSF RL ++  +IL     EL +  +    +I
Sbjct: 31  DFSRILILDTLDNENRYIQYINETLKD-WSFERLGVLEQAILLMACSEL-DHQTASAAII 88

Query: 127 ISEYVCIAHDFFYGDEPKFINAVLDKV 153
           I E V +A D+   +  + IN VLD++
Sbjct: 89  IDEAVRLAKDYCDDEAYRLINGVLDRI 115


>gi|148262276|ref|YP_001228982.1| sun protein [Geobacter uraniireducens Rf4]
 gi|146395776|gb|ABQ24409.1| sun protein [Geobacter uraniireducens Rf4]
          Length = 448

 Score = 36.2 bits (82), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 33/123 (26%), Positives = 58/123 (47%), Gaps = 6/123 (4%)

Query: 39  EIISEYETYRFCADTELDVE--SVYLH-VDLEWFRVIIHGVMDRKQHIDLLISSCLTEKW 95
           EI+   +  R  AD  +D E  S +L   D      +++GV+ R+  +D +I+    +K 
Sbjct: 12  EILLRIDKERSYADILIDRELSSGFLQGPDRGLLTELVYGVLRRQGTLDYIINRFSKQK- 70

Query: 96  SFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSR 155
              RL+  +  +LR G+ ++     VPV   ++E V +A          F+NAVL    R
Sbjct: 71  -SERLERSVLVLLRIGLYQIFYLDRVPVSAAVNETVKLAK-VLAPRASGFVNAVLRSADR 128

Query: 156 KEE 158
           + +
Sbjct: 129 ERD 131


>gi|167750828|ref|ZP_02422955.1| hypothetical protein EUBSIR_01811 [Eubacterium siraeum DSM 15702]
 gi|167656263|gb|EDS00393.1| hypothetical protein EUBSIR_01811 [Eubacterium siraeum DSM 15702]
          Length = 439

 Score = 36.2 bits (82), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 25/95 (26%), Positives = 47/95 (49%), Gaps = 4/95 (4%)

Query: 65  DLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVE 124
           D  +   + +GV++R+  +D LI         F ++   +  ILR G  +L+  +SVP  
Sbjct: 39  DKAFSAALFYGVLERRMTLDYLIR--YYSGIEFDKIKTAVVEILRMGFYQLLFMNSVPDS 96

Query: 125 VIISEYVCIAHDFFYGDEPK-FINAVLDKVSRKEE 158
             ++E V +  D+    + K ++NA+L    R E+
Sbjct: 97  AAVNESVALC-DYCNSTKAKGYVNAILRTFLRNEK 130


>gi|315023990|gb|EFT36992.1| Transcription termination protein NusB [Riemerella anatipestifer
           RA-YM]
          Length = 301

 Score = 36.2 bits (82), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 23/67 (34%), Positives = 34/67 (50%), Gaps = 2/67 (2%)

Query: 95  WSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVS 154
           W   R+ ++   IL A + EL      P +VII+EY+ I+  F       FIN +L K +
Sbjct: 236 WELDRISLMDRVILIAAITELDHFPLTPSKVIINEYIEISKAFSTDKSQVFINGLLGKYA 295

Query: 155 RKEEIKR 161
             E+I R
Sbjct: 296 --EDINR 300


>gi|291557813|emb|CBL34930.1| ribosomal RNA small subunit methyltransferase RsmB [Eubacterium
           siraeum V10Sc8a]
          Length = 439

 Score = 36.2 bits (82), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 25/95 (26%), Positives = 47/95 (49%), Gaps = 4/95 (4%)

Query: 65  DLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVE 124
           D  +   + +GV++R+  +D LI         F ++   +  ILR G  +L+  +SVP  
Sbjct: 39  DKAFSAALFYGVLERRMTLDYLIR--YYSGIEFDKIKTAVVEILRMGFYQLLFMNSVPDS 96

Query: 125 VIISEYVCIAHDFFYGDEPK-FINAVLDKVSRKEE 158
             ++E V +  D+    + K ++NA+L    R E+
Sbjct: 97  AAVNESVALC-DYCNSTKAKGYVNAILRTFLRNEK 130


>gi|291530595|emb|CBK96180.1| ribosomal RNA small subunit methyltransferase RsmB [Eubacterium
           siraeum 70/3]
          Length = 439

 Score = 36.2 bits (82), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 25/95 (26%), Positives = 47/95 (49%), Gaps = 4/95 (4%)

Query: 65  DLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVE 124
           D  +   + +GV++R+  +D LI         F ++   +  ILR G  +L+  +SVP  
Sbjct: 39  DKAFSAALFYGVLERRMTLDYLIR--YYSGIEFDKIKTAVVEILRMGFYQLLFMNSVPDS 96

Query: 125 VIISEYVCIAHDFFYGDEPK-FINAVLDKVSRKEE 158
             ++E V +  D+    + K ++NA+L    R E+
Sbjct: 97  AAVNESVALC-DYCNSTKAKGYVNAILRTFLRNEK 130


>gi|294793720|ref|ZP_06758857.1| transcription antitermination factor NusB [Veillonella sp. 3_1_44]
 gi|294455290|gb|EFG23662.1| transcription antitermination factor NusB [Veillonella sp. 3_1_44]
          Length = 134

 Score = 36.2 bits (82), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 30/107 (28%), Positives = 52/107 (48%), Gaps = 6/107 (5%)

Query: 52  DTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISS-CLTEKWSFSRLDMILCSILRA 110
           D +    +++  +D  +   II GV+   + ID  +   C + K   + LD +  SILR 
Sbjct: 29  DVQFPEGNIHKAMDKAYANSIIEGVLSNVEAIDATLQPFCKSRK--VANLDKVDRSILRI 86

Query: 111 GVLELIECHSVPVE--VIISEYVCIAHDFFYGDEPKFINAVLDKVSR 155
            V E+      P+E  + I+E + +A +F      K INA+LD  ++
Sbjct: 87  AVWEM-NNKVEPLEPSIAINEAIQLAKEFGSDASYKLINAILDAYNK 132


>gi|170289195|ref|YP_001739433.1| sun protein [Thermotoga sp. RQ2]
 gi|170176698|gb|ACB09750.1| sun protein [Thermotoga sp. RQ2]
          Length = 431

 Score = 36.2 bits (82), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 31/122 (25%), Positives = 61/122 (50%), Gaps = 8/122 (6%)

Query: 40  IISEYETYRFCADTELD-VESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFS 98
           ++ +YE  +F +  ++D V S     D  +F+ ++ GV+ +++ +D  I+  L +K    
Sbjct: 12  LLRKYEKEKFISREDVDSVLSFLDDRDRRFFKELVWGVVRKEELLDWYINQLLKKK---- 67

Query: 99  RLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEE 158
            +   +   LR G  +L+  +SVP    +SE V +  +  +    K +NAVL ++    E
Sbjct: 68  DVPPAVRVALRMGAYQLLFMNSVPDYAAVSETVKLVKNENFK---KLVNAVLRRLRTVPE 124

Query: 159 IK 160
            K
Sbjct: 125 PK 126


>gi|282866194|ref|ZP_06275241.1| Fmu (Sun) domain protein [Streptomyces sp. ACTE]
 gi|282558978|gb|EFB64533.1| Fmu (Sun) domain protein [Streptomyces sp. ACTE]
          Length = 477

 Score = 36.2 bits (82), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 21/83 (25%), Positives = 41/83 (49%), Gaps = 3/83 (3%)

Query: 72  IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
           +++G + R+   D ++++C+        +D  +  ++  GV +L+    +P    +S  V
Sbjct: 67  LVYGTLRRQGTYDAIVAACVDR--PLREVDPPVLDVIEMGVHQLLGTR-IPTHAAVSASV 123

Query: 132 CIAHDFFYGDEPKFINAVLDKVS 154
            +A         KF+NAVL KVS
Sbjct: 124 ELARVVLGEGRAKFVNAVLRKVS 146


>gi|189467494|ref|ZP_03016279.1| hypothetical protein BACINT_03883 [Bacteroides intestinalis DSM
           17393]
 gi|189435758|gb|EDV04743.1| hypothetical protein BACINT_03883 [Bacteroides intestinalis DSM
           17393]
          Length = 308

 Score = 36.2 bits (82), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 19/75 (25%), Positives = 38/75 (50%), Gaps = 2/75 (2%)

Query: 92  TEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLD 151
           T  W   R+  +   I++  + E++   ++PV V ++EYV IA  +       F+N  LD
Sbjct: 234 TRNWDLDRVAFMDVIIMQCALAEILSFPNIPVSVSLNEYVEIAKVYSTIKSGSFVNGTLD 293

Query: 152 KVSRKEEIKRSGCVS 166
            +    ++K+ G ++
Sbjct: 294 GIVN--QLKKEGKLA 306


>gi|167750987|ref|ZP_02423114.1| hypothetical protein EUBSIR_01972 [Eubacterium siraeum DSM 15702]
 gi|167656166|gb|EDS00296.1| hypothetical protein EUBSIR_01972 [Eubacterium siraeum DSM 15702]
 gi|291557466|emb|CBL34583.1| transcription antitermination factor NusB [Eubacterium siraeum
           V10Sc8a]
          Length = 143

 Score = 36.2 bits (82), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 33/132 (25%), Positives = 63/132 (47%), Gaps = 14/132 (10%)

Query: 20  RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79
           R AA+  L+Q+ +   +  EI+   E  +   + E + +SV L            GV + 
Sbjct: 12  REAALLILFQMKLNPETLDEIL---EDCKESFEMEYNSQSVKL----------AKGVAEH 58

Query: 80  KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139
           +  ++ +I S  +      R+  I  +I++  + E+  C SVP +V I+E +  A ++  
Sbjct: 59  EDELNGIIES-YSPSRKLDRISYINLAIMKIALYEMKYCPSVPDKVAINEAIEFAKEYAD 117

Query: 140 GDEPKFINAVLD 151
             + +FIN VL+
Sbjct: 118 KTDVRFINGVLN 129


>gi|224538936|ref|ZP_03679475.1| hypothetical protein BACCELL_03833 [Bacteroides cellulosilyticus
           DSM 14838]
 gi|224519454|gb|EEF88559.1| hypothetical protein BACCELL_03833 [Bacteroides cellulosilyticus
           DSM 14838]
          Length = 308

 Score = 36.2 bits (82), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 19/75 (25%), Positives = 38/75 (50%), Gaps = 2/75 (2%)

Query: 92  TEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLD 151
           T  W   R+  +   I++  + E++   ++PV V ++EYV IA  +       F+N  LD
Sbjct: 234 TRNWDLDRVAFMDVIIMQCALAEILSFPNIPVSVSLNEYVEIAKVYSTIKSGSFVNGTLD 293

Query: 152 KVSRKEEIKRSGCVS 166
            +    ++K+ G ++
Sbjct: 294 GIVN--QLKKEGKLA 306


>gi|295091953|emb|CBK78060.1| ribosomal RNA small subunit methyltransferase RsmB [Clostridium cf.
           saccharolyticum K10]
          Length = 472

 Score = 36.2 bits (82), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 22/91 (24%), Positives = 43/91 (47%), Gaps = 2/91 (2%)

Query: 68  WFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVII 127
           + + ++ G ++R   ID +I S  +      ++   + +ILR GV ++     VP     
Sbjct: 68  FIKRVVDGTLERLMQIDFIIESFSST--PLRKMKPTVRTILRMGVYQICYMDRVPDSAAC 125

Query: 128 SEYVCIAHDFFYGDEPKFINAVLDKVSRKEE 158
           +E V +     +     F+N VL  ++RK+E
Sbjct: 126 NEAVKLTVKRGFSGLKGFVNGVLRNIARKKE 156


>gi|256545255|ref|ZP_05472620.1| N utilization substance protein B [Anaerococcus vaginalis ATCC
           51170]
 gi|256399082|gb|EEU12694.1| N utilization substance protein B [Anaerococcus vaginalis ATCC
           51170]
          Length = 58

 Score = 36.2 bits (82), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 22/51 (43%), Positives = 31/51 (60%), Gaps = 1/51 (1%)

Query: 106 SILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRK 156
           SIL   V E+ E   +P+ V I+E V IA ++   D  KFIN+VL K++ K
Sbjct: 7   SILFLSVNEM-ENLDIPISVSINEAVNIAKEYSTSDGYKFINSVLGKIAEK 56


>gi|283797834|ref|ZP_06346987.1| ribosomal RNA small subunit methyltransferase B [Clostridium sp.
           M62/1]
 gi|291074522|gb|EFE11886.1| ribosomal RNA small subunit methyltransferase B [Clostridium sp.
           M62/1]
          Length = 472

 Score = 35.8 bits (81), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 22/91 (24%), Positives = 43/91 (47%), Gaps = 2/91 (2%)

Query: 68  WFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVII 127
           + + ++ G ++R   ID +I S  +      ++   + +ILR GV ++     VP     
Sbjct: 68  FIKRVVDGTLERLMQIDFIIESFSST--PLRKMKPTVRTILRMGVYQICYMDRVPDSAAC 125

Query: 128 SEYVCIAHDFFYGDEPKFINAVLDKVSRKEE 158
           +E V +     +     F+N VL  ++RK+E
Sbjct: 126 NEAVKLTVKRGFSGLKGFVNGVLRNIARKKE 156


>gi|163841091|ref|YP_001625496.1| 16S rRNA m(5)C 967 methyltransferase [Renibacterium salmoninarum
           ATCC 33209]
 gi|162954567|gb|ABY24082.1| 16S rRNA m(5)C 967 methyltransferase [Renibacterium salmoninarum
           ATCC 33209]
          Length = 458

 Score = 35.8 bits (81), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 22/84 (26%), Positives = 40/84 (47%), Gaps = 3/84 (3%)

Query: 74  HGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCI 133
           +G +  K   D +I+SC+      + +D  +   LR G  +L+    +P    +++ V +
Sbjct: 43  YGALRGKGTYDAIIASCVDRP--LAEVDEAILDALRLGSHQLLAMR-IPPHAAVNQTVGL 99

Query: 134 AHDFFYGDEPKFINAVLDKVSRKE 157
           A          FINAVL K++ K+
Sbjct: 100 ARAVIGAGPASFINAVLRKIAAKD 123


>gi|297544782|ref|YP_003677084.1| sun protein [Thermoanaerobacter mathranii subsp. mathranii str. A3]
 gi|296842557|gb|ADH61073.1| sun protein [Thermoanaerobacter mathranii subsp. mathranii str. A3]
          Length = 444

 Score = 35.8 bits (81), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 26/95 (27%), Positives = 45/95 (47%), Gaps = 5/95 (5%)

Query: 64  VDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPV 123
           +D  + + ++ GV++RK  +D ++S  + +       D      L  G+ +L+    VP 
Sbjct: 37  IDRGFTKELVFGVIERKYTLDFILSFFVKKPA-----DEKSKIFLEMGLYQLLYMDKVPS 91

Query: 124 EVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEE 158
              I+E V IA +        FINAVL    R++E
Sbjct: 92  YAAINETVNIAKNVLGIKRANFINAVLRSYEREKE 126


>gi|229918581|ref|YP_002887227.1| sun protein [Exiguobacterium sp. AT1b]
 gi|229470010|gb|ACQ71782.1| sun protein [Exiguobacterium sp. AT1b]
          Length = 443

 Score = 35.8 bits (81), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 33/138 (23%), Positives = 60/138 (43%), Gaps = 15/138 (10%)

Query: 20  RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79
           R AA+  L +I+  G  +T  +++    +  A             D+  +  +++G + R
Sbjct: 4   REAALDTLMKIEQGGAYSTIAVNDTLKQKKVAPK-----------DVGLYTELVYGTLSR 52

Query: 80  KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139
           K  +D ++   +    S  +LD  +  +LR  V +L     VP   ++ E V IA    +
Sbjct: 53  KGTLDYILKDRIR---SPKKLDKFVLPLLRMSVYQLFYLDKVPDRAVLHEAVEIAKKRGH 109

Query: 140 G-DEPKFINAVLDKVSRK 156
                KF+N VL  V R+
Sbjct: 110 HLGTSKFVNGVLRNVLRE 127


>gi|257126675|ref|YP_003164789.1| NusB antitermination factor [Leptotrichia buccalis C-1013-b]
 gi|257050614|gb|ACV39798.1| NusB antitermination factor [Leptotrichia buccalis C-1013-b]
          Length = 138

 Score = 35.8 bits (81), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 21/66 (31%), Positives = 36/66 (54%), Gaps = 3/66 (4%)

Query: 95  WSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVS 154
           W++ RL  I   +L+    E I   ++  E+ I+E + IA  + Y D  +F+N +L K+ 
Sbjct: 71  WTYERLGTIEKVLLKISFYE-ITIKNIGYEIAINEVLEIAKKYSYNDTKEFLNGILAKLV 129

Query: 155 R--KEE 158
           +  KEE
Sbjct: 130 KDIKEE 135


>gi|313206914|ref|YP_004046091.1| nusb antitermination factor [Riemerella anatipestifer DSM 15868]
 gi|312446230|gb|ADQ82585.1| NusB antitermination factor [Riemerella anatipestifer DSM 15868]
 gi|325335649|gb|ADZ11923.1| NusB [Riemerella anatipestifer RA-GD]
          Length = 301

 Score = 35.8 bits (81), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 23/67 (34%), Positives = 34/67 (50%), Gaps = 2/67 (2%)

Query: 95  WSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVS 154
           W   R+ ++   IL A + EL      P +VII+EY+ I+  F       FIN +L K +
Sbjct: 236 WELDRVSLMDRVILIAAITELDHFPLTPSKVIINEYIEISKAFSTDKSQVFINGLLGKYA 295

Query: 155 RKEEIKR 161
             E+I R
Sbjct: 296 --EDINR 300


>gi|222054190|ref|YP_002536552.1| sun protein [Geobacter sp. FRC-32]
 gi|221563479|gb|ACM19451.1| sun protein [Geobacter sp. FRC-32]
          Length = 448

 Score = 35.8 bits (81), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 23/87 (26%), Positives = 44/87 (50%), Gaps = 3/87 (3%)

Query: 72  IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
           +++GV+ R+  +D +I    +++    RL+  +  +LR G+ ++     VPV   ++E V
Sbjct: 48  LVYGVLRRQATLDHIIRRFSSQR--LERLERSVLLLLRIGLYQMFYLDRVPVSAAVNETV 105

Query: 132 CIAHDFFYGDEPKFINAVLDKVSRKEE 158
            +A          FINAVL    R+ +
Sbjct: 106 KLAK-VLVPRASGFINAVLRNADRERD 131


>gi|295094725|emb|CBK83816.1| ribosomal RNA small subunit methyltransferase RsmB [Coprococcus sp.
           ART55/1]
          Length = 445

 Score = 35.8 bits (81), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 23/94 (24%), Positives = 44/94 (46%), Gaps = 2/94 (2%)

Query: 65  DLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVE 124
           D  +   ++ GV +++  +D +I+     K   ++   ++  +LR G  EL    SVP  
Sbjct: 41  DRAYITRMVEGVTEQRIKLDYIINQF--SKTKVNKCKPLIRCVLRMGTYELFFMDSVPDS 98

Query: 125 VIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEE 158
              +  V +A D  +G    F+N VL  ++R  +
Sbjct: 99  AACNLSVKLAVDHGFGSLRGFVNGVLRNIARNRD 132


>gi|297195546|ref|ZP_06912944.1| RNA-binding Sun protein [Streptomyces pristinaespiralis ATCC 25486]
 gi|297152839|gb|EDY65275.2| RNA-binding Sun protein [Streptomyces pristinaespiralis ATCC 25486]
          Length = 291

 Score = 35.8 bits (81), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 21/84 (25%), Positives = 41/84 (48%), Gaps = 3/84 (3%)

Query: 72  IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
           +++G + R+   D +I++C+        +D  +  +L  G  +L+    +P    +S  V
Sbjct: 67  LVYGTLRRQGTYDAIIAACIDR--PLREVDPPVLDVLALGAHQLLGTR-IPTHAAVSASV 123

Query: 132 CIAHDFFYGDEPKFINAVLDKVSR 155
            +A         KF+NAVL K+S+
Sbjct: 124 ELARVVLGDGRAKFVNAVLRKISQ 147


>gi|160947101|ref|ZP_02094268.1| hypothetical protein PEPMIC_01033 [Parvimonas micra ATCC 33270]
 gi|158446235|gb|EDP23230.1| hypothetical protein PEPMIC_01033 [Parvimonas micra ATCC 33270]
          Length = 434

 Score = 35.8 bits (81), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 22/95 (23%), Positives = 45/95 (47%), Gaps = 2/95 (2%)

Query: 64  VDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPV 123
           +D ++ R I++G ++ + ++D +I      K    + +  + +ILR  + ++I    +P 
Sbjct: 33  LDSKFLREIVYGTLENRIYLDYIIKKLC--KLRIKKFNPYILNILRISIYQIIFMDKIPE 90

Query: 124 EVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEE 158
             II+E V +   F       F+N  L    R +E
Sbjct: 91  FAIINEAVNLTKVFKLKKFSSFVNGSLRNFLRNKE 125


>gi|166032716|ref|ZP_02235545.1| hypothetical protein DORFOR_02431 [Dorea formicigenerans ATCC
           27755]
 gi|166027073|gb|EDR45830.1| hypothetical protein DORFOR_02431 [Dorea formicigenerans ATCC
           27755]
          Length = 433

 Score = 35.8 bits (81), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 22/85 (25%), Positives = 43/85 (50%), Gaps = 2/85 (2%)

Query: 72  IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
           ++ G ++R+  ID +I+     K   ++   ++ +ILR+ V +L     VP   + +E V
Sbjct: 50  VVEGTLERQIEIDYIINQF--SKVKVNKQKPVIRTILRSSVYQLKYMDHVPDSAVCNEAV 107

Query: 132 CIAHDFFYGDEPKFINAVLDKVSRK 156
            +A    + +   F+N VL  +SR 
Sbjct: 108 KLAGKKGFVNLKGFVNGVLRNISRN 132


>gi|237749244|ref|ZP_04579724.1| N utilization substance protein B [Oxalobacter formigenes OXCC13]
 gi|229380606|gb|EEO30697.1| N utilization substance protein B [Oxalobacter formigenes OXCC13]
          Length = 156

 Score = 35.8 bits (81), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 21/57 (36%), Positives = 30/57 (52%)

Query: 100 LDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRK 156
           L  +  +IL  G  EL     +P  V+I+E V +   F   D  KF+N VLDK++ K
Sbjct: 88  LSPVEHAILLLGAFELSNHIEIPYRVVINEAVELTKSFGGIDGHKFVNGVLDKLAAK 144


>gi|317472520|ref|ZP_07931840.1| ribosomal RNA small subunit methyltransferase B [Anaerostipes sp.
           3_2_56FAA]
 gi|316899997|gb|EFV21991.1| ribosomal RNA small subunit methyltransferase B [Anaerostipes sp.
           3_2_56FAA]
          Length = 448

 Score = 35.8 bits (81), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 23/94 (24%), Positives = 46/94 (48%), Gaps = 2/94 (2%)

Query: 65  DLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVE 124
           D  +F  +  G ++R+  ID +I   L  K    ++  ++ S+LR G  +++    +P  
Sbjct: 40  DRAFFTRLCQGTLERRLTIDYVID--LYSKTKERKMKPLVRSLLRMGACQILFMDHIPDS 97

Query: 125 VIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEE 158
              +E V +A    +     F+N VL  +SR+++
Sbjct: 98  AACNECVKLAKKRGFSKLSGFVNGVLRTISRQKQ 131


>gi|224500053|ref|ZP_03668402.1| hypothetical protein LmonF1_10399 [Listeria monocytogenes Finland
           1988]
          Length = 399

 Score = 35.8 bits (81), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 24/85 (28%), Positives = 41/85 (48%), Gaps = 5/85 (5%)

Query: 72  IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
           +++G   RK  +D  ++  L ++      D  + ++LR  V +L     VP   I++E  
Sbjct: 4   LVYGTTQRKITLDYYLAPFLNKEP-----DNWVKNLLRMSVYQLTYLDKVPEHAILNEAG 58

Query: 132 CIAHDFFYGDEPKFINAVLDKVSRK 156
            IA +  +    KF+N VL  V RK
Sbjct: 59  DIAKNMGHQGVTKFVNGVLRNVIRK 83


>gi|193214990|ref|YP_001996189.1| sun protein [Chloroherpeton thalassium ATCC 35110]
 gi|193088467|gb|ACF13742.1| sun protein [Chloroherpeton thalassium ATCC 35110]
          Length = 443

 Score = 35.8 bits (81), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 36/143 (25%), Positives = 65/143 (45%), Gaps = 19/143 (13%)

Query: 19  ARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMD 78
           AR  AVQAL ++++    +   ++      F + T L+       VD  +   I++G + 
Sbjct: 4   AREIAVQALREVEVNHAKSDTALNH-----FFSITALE------PVDRAFTMQIVYGTLR 52

Query: 79  RKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDF- 137
            K  ID +I      +  + ++D+ + +ILR G  +L+    VP    ++E V +A    
Sbjct: 53  EKMKIDHVIKQFY--RHDYDKMDIDVKNILRIGAYQLLFLSKVPRWAAVNESVELAKKLK 110

Query: 138 --FYGDEPKFINAVLDKVSRKEE 158
             F G+    +N VL  +S   E
Sbjct: 111 GQFLGN---LVNGVLRNISNNLE 130


>gi|212716890|ref|ZP_03325018.1| hypothetical protein BIFCAT_01834 [Bifidobacterium catenulatum DSM
           16992]
 gi|225350765|ref|ZP_03741788.1| hypothetical protein BIFPSEUDO_02334 [Bifidobacterium
           pseudocatenulatum DSM 20438]
 gi|212660175|gb|EEB20750.1| hypothetical protein BIFCAT_01834 [Bifidobacterium catenulatum DSM
           16992]
 gi|225158221|gb|EEG71463.1| hypothetical protein BIFPSEUDO_02334 [Bifidobacterium
           pseudocatenulatum DSM 20438]
          Length = 147

 Score = 35.8 bits (81), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 33/136 (24%), Positives = 55/136 (40%), Gaps = 14/136 (10%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV-IIH 74
           R  AR  A+  LY+ D  G     +++E             +E       L  + + I+ 
Sbjct: 3   RSTARKRALNTLYEADEKGQDILSLLAER------------IEQPGAQTPLPEYAIEIVR 50

Query: 75  GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134
           GV +    ID  +    T  W   R+ ++  +ILR    E++    VP  V I E + +A
Sbjct: 51  GVAEHIAAIDSTLDEHST-GWKVKRMGVVDRNILRIAAWEIMFNDDVPNMVAIDEALGLA 109

Query: 135 HDFFYGDEPKFINAVL 150
                 + P FI+ +L
Sbjct: 110 KTLCDDESPAFIHGLL 125


>gi|256384049|gb|ACU78619.1| ribosomal RNA small subunit methyltransferase B [Mycoplasma
           mycoides subsp. capri str. GM12]
 gi|256384881|gb|ACU79450.1| ribosomal RNA small subunit methyltransferase B [Mycoplasma
           mycoides subsp. capri str. GM12]
 gi|296455325|gb|ADH21560.1| ribosomal RNA small subunit methyltransferase B [synthetic
           Mycoplasma mycoides JCVI-syn1.0]
          Length = 419

 Score = 35.8 bits (81), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 24/91 (26%), Positives = 46/91 (50%), Gaps = 5/91 (5%)

Query: 65  DLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVE 124
           D ++   ++HGV+  K H+D L+   +  K +   L +IL       + ++I  +S+P  
Sbjct: 37  DKDFVFNLVHGVISNKIHLDYLLGKLIDVKKTSIDLQIILL----ISLYQMIYLNSIPNY 92

Query: 125 VIISEYVCIAHDFFYGDEPKFINAVLDKVSR 155
            I++E + +        +  FINA+L+K  R
Sbjct: 93  AIVNESINLIKT-TSQKQANFINAILNKFLR 122


>gi|47096543|ref|ZP_00234133.1| sun protein [Listeria monocytogenes str. 1/2a F6854]
 gi|254899481|ref|ZP_05259405.1| hypothetical protein LmonJ_06694 [Listeria monocytogenes J0161]
 gi|254912380|ref|ZP_05262392.1| sun protein [Listeria monocytogenes J2818]
 gi|254936707|ref|ZP_05268404.1| sun protein [Listeria monocytogenes F6900]
 gi|47015075|gb|EAL06018.1| sun protein [Listeria monocytogenes str. 1/2a F6854]
 gi|258609304|gb|EEW21912.1| sun protein [Listeria monocytogenes F6900]
 gi|293590362|gb|EFF98696.1| sun protein [Listeria monocytogenes J2818]
          Length = 444

 Score = 35.8 bits (81), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 24/85 (28%), Positives = 41/85 (48%), Gaps = 5/85 (5%)

Query: 72  IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
           +++G   RK  +D  ++  L ++      D  + ++LR  V +L     VP   I++E  
Sbjct: 49  LVYGTTQRKITLDYYLAPFLNKEP-----DNWVKNLLRMSVYQLTYLDKVPEHAILNEAG 103

Query: 132 CIAHDFFYGDEPKFINAVLDKVSRK 156
            IA +  +    KF+N VL  V RK
Sbjct: 104 DIAKNMGHQGVTKFVNGVLRNVIRK 128


>gi|325298378|ref|YP_004258295.1| NusB antitermination factor [Bacteroides salanitronis DSM 18170]
 gi|324317931|gb|ADY35822.1| NusB antitermination factor [Bacteroides salanitronis DSM 18170]
          Length = 308

 Score = 35.4 bits (80), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 20/68 (29%), Positives = 35/68 (51%), Gaps = 1/68 (1%)

Query: 86  LISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKF 145
           LIS   +  W   R+ ++   I++  + E++   ++PV V ++EYV IA  +       F
Sbjct: 229 LISEN-SRNWDLKRVAVMDVIIMQIALAEILSFPNIPVNVSLNEYVEIAKLYSTPKSGGF 287

Query: 146 INAVLDKV 153
           IN  LD +
Sbjct: 288 INGTLDGI 295


>gi|290961866|ref|YP_003493048.1| RNA-binding Sun protein [Streptomyces scabiei 87.22]
 gi|260651392|emb|CBG74514.1| putative RNA-binding Sun protein [Streptomyces scabiei 87.22]
          Length = 452

 Score = 35.4 bits (80), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 21/86 (24%), Positives = 42/86 (48%), Gaps = 3/86 (3%)

Query: 72  IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
           +++G + R+   D +I+SC+        +D  +  +L  G  +L+    +P    +S  V
Sbjct: 48  LVYGTLRRQGTYDAVIASCVDRP--LREVDPPVLDVLSLGAHQLLGTR-IPTHAAVSASV 104

Query: 132 CIAHDFFYGDEPKFINAVLDKVSRKE 157
            +A         KF+NAVL K+++ +
Sbjct: 105 DLARVVLGDGRAKFVNAVLRKIAQHD 130


>gi|16803862|ref|NP_465347.1| hypothetical protein lmo1822 [Listeria monocytogenes EGD-e]
 gi|224501376|ref|ZP_03669683.1| hypothetical protein LmonFR_02455 [Listeria monocytogenes FSL
           R2-561]
 gi|254829183|ref|ZP_05233870.1| sun protein [Listeria monocytogenes FSL N3-165]
 gi|254831576|ref|ZP_05236231.1| hypothetical protein Lmon1_09493 [Listeria monocytogenes 10403S]
 gi|16411276|emb|CAC99900.1| lmo1822 [Listeria monocytogenes EGD-e]
 gi|258601593|gb|EEW14918.1| sun protein [Listeria monocytogenes FSL N3-165]
          Length = 444

 Score = 35.4 bits (80), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 24/85 (28%), Positives = 41/85 (48%), Gaps = 5/85 (5%)

Query: 72  IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
           +++G   RK  +D  ++  L ++      D  + ++LR  V +L     VP   I++E  
Sbjct: 49  LVYGTTQRKITLDYYLAPFLNKEP-----DNWVKNLLRMSVYQLTYLDKVPEHAILNEAG 103

Query: 132 CIAHDFFYGDEPKFINAVLDKVSRK 156
            IA +  +    KF+N VL  V RK
Sbjct: 104 DIAKNMGHQGVTKFVNGVLRNVIRK 128


>gi|284802268|ref|YP_003414133.1| hypothetical protein LM5578_2024 [Listeria monocytogenes 08-5578]
 gi|284995410|ref|YP_003417178.1| hypothetical protein LM5923_1975 [Listeria monocytogenes 08-5923]
 gi|284057830|gb|ADB68771.1| hypothetical protein LM5578_2024 [Listeria monocytogenes 08-5578]
 gi|284060877|gb|ADB71816.1| hypothetical protein LM5923_1975 [Listeria monocytogenes 08-5923]
          Length = 444

 Score = 35.4 bits (80), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 24/85 (28%), Positives = 41/85 (48%), Gaps = 5/85 (5%)

Query: 72  IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
           +++G   RK  +D  ++  L ++      D  + ++LR  V +L     VP   I++E  
Sbjct: 49  LVYGTTQRKITLDYYLAPFLNKEP-----DNWVKNLLRMSVYQLTYLDKVPEHAILNEAG 103

Query: 132 CIAHDFFYGDEPKFINAVLDKVSRK 156
            IA +  +    KF+N VL  V RK
Sbjct: 104 DIAKNMGHQGVTKFVNGVLRNVIRK 128


>gi|189462539|ref|ZP_03011324.1| hypothetical protein BACCOP_03229 [Bacteroides coprocola DSM 17136]
 gi|189430700|gb|EDU99684.1| hypothetical protein BACCOP_03229 [Bacteroides coprocola DSM 17136]
          Length = 308

 Score = 35.4 bits (80), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 19/68 (27%), Positives = 36/68 (52%), Gaps = 1/68 (1%)

Query: 86  LISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKF 145
           LIS   ++ W   R+ ++   I++  + E++   ++P+ V ++EYV IA  +       F
Sbjct: 229 LISEN-SKNWDLDRVAVMDVIIMQIALAEILSFPNIPINVSLNEYVEIAKLYSTPKSGGF 287

Query: 146 INAVLDKV 153
           IN  LD +
Sbjct: 288 INGTLDGI 295


>gi|150390542|ref|YP_001320591.1| sun protein [Alkaliphilus metalliredigens QYMF]
 gi|149950404|gb|ABR48932.1| sun protein [Alkaliphilus metalliredigens QYMF]
          Length = 444

 Score = 35.4 bits (80), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 37/143 (25%), Positives = 64/143 (44%), Gaps = 14/143 (9%)

Query: 19  ARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMD 78
           AR +A++ LY I           +E E Y   A  +      +  VD  +   +++GV++
Sbjct: 3   ARESALKVLYAI-----------TEQEAYSNIALNQQFRAETHTPVDKAFVTELVYGVVE 51

Query: 79  RKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFF 138
               ID +I    T K    +++    S+LR  + ++     VPV   ++E V ++  + 
Sbjct: 52  NLIWIDYVIDQFSTTKTI--KMNPWTLSLLRLAIYQIFFLDRVPVFAAVNESVDLSKKYC 109

Query: 139 YGDEPKFINAVLDKVSRKEEIKR 161
                 FIN VL  + RK+EI R
Sbjct: 110 -KHTTAFINGVLRNILRKKEIIR 131


>gi|220931836|ref|YP_002508744.1| sun protein [Halothermothrix orenii H 168]
 gi|219993146|gb|ACL69749.1| sun protein [Halothermothrix orenii H 168]
          Length = 440

 Score = 35.4 bits (80), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 22/87 (25%), Positives = 43/87 (49%), Gaps = 2/87 (2%)

Query: 72  IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
           +++GV+ +K+ +D ++S C +++    ++D  + S LR  + ++    SVP    + E V
Sbjct: 44  LVYGVLRQKKRLDYMLS-CFSKR-PLRKMDNEVLSALRVALYQIEYTDSVPARAAVYETV 101

Query: 132 CIAHDFFYGDEPKFINAVLDKVSRKEE 158
                F      KF N VL    R ++
Sbjct: 102 EALKSFTGHGAVKFTNGVLRSYLRNKD 128


>gi|283455658|ref|YP_003360222.1| N utilization substance protein [Bifidobacterium dentium Bd1]
 gi|283102292|gb|ADB09398.1| nusB N utilization substance protein [Bifidobacterium dentium Bd1]
          Length = 86

 Score = 35.4 bits (80), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 20/63 (31%), Positives = 31/63 (49%)

Query: 92  TEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLD 151
           +  W   R+ ++  +ILR  V E++    VP  V I E + +A      D P FI+ +L 
Sbjct: 6   STGWKVKRMGVVDRNILRIAVWEIMFNDDVPNMVAIDEALGLAKTLCDDDSPAFIHGLLS 65

Query: 152 KVS 154
            VS
Sbjct: 66  AVS 68


>gi|308177500|ref|YP_003916906.1| transcription antitermination factor NusB [Arthrobacter
           arilaitensis Re117]
 gi|307744963|emb|CBT75935.1| transcription antitermination factor NusB [Arthrobacter
           arilaitensis Re117]
          Length = 136

 Score = 35.4 bits (80), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 28/87 (32%), Positives = 45/87 (51%), Gaps = 1/87 (1%)

Query: 67  EWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVI 126
           E+   II GVM     ID ++ S + + W+  R+  +  S LR GV EL+    VP  V 
Sbjct: 42  EYSLTIIEGVMAHLDRIDEVLESYVKD-WTIERMPAVDRSALRIGVWELLYNDDVPDAVA 100

Query: 127 ISEYVCIAHDFFYGDEPKFINAVLDKV 153
           ++E V    +    + P+F+N VL ++
Sbjct: 101 VAEAVVNVRELSTDESPEFVNGVLGRI 127


>gi|148270410|ref|YP_001244870.1| sun protein [Thermotoga petrophila RKU-1]
 gi|147735954|gb|ABQ47294.1| sun protein [Thermotoga petrophila RKU-1]
          Length = 431

 Score = 35.4 bits (80), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 31/122 (25%), Positives = 60/122 (49%), Gaps = 8/122 (6%)

Query: 40  IISEYETYRFCADTELD-VESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFS 98
           ++ +YE  +F    ++D V S     D  +F+ ++ GV+ +++ +D  I+  L +K    
Sbjct: 12  LLRKYEKEKFILREDVDSVLSFLDDKDRRFFKELVWGVVRKEELLDWYINQLLKKK---- 67

Query: 99  RLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEE 158
            +   +   LR G  +L+  +SVP    +SE V +  +  +    K +NAVL ++    E
Sbjct: 68  DIPPAVRVALRMGAYQLLFMNSVPDYAAVSETVKLVKNENFK---KLVNAVLRRLRTVPE 124

Query: 159 IK 160
            K
Sbjct: 125 PK 126


>gi|312797049|ref|YP_004029971.1| N utilization substance protein B [Burkholderia rhizoxinica HKI
           454]
 gi|312168824|emb|CBW75827.1| N utilization substance protein B [Burkholderia rhizoxinica HKI
           454]
          Length = 60

 Score = 35.4 bits (80), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 18/46 (39%), Positives = 28/46 (60%), Gaps = 3/46 (6%)

Query: 121 VPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVS---RKEEIKRSG 163
           +P  V+I+E V +A  F   D  K++N VLDK++   R +E+K  G
Sbjct: 15  IPYRVVINEAVELAKTFGGADGYKYVNGVLDKLAVTMRADEVKARG 60


>gi|188994695|ref|YP_001928947.1| probable nitrogen utilization substance protein [Porphyromonas
           gingivalis ATCC 33277]
 gi|188594375|dbj|BAG33350.1| probable nitrogen utilization substance protein [Porphyromonas
           gingivalis ATCC 33277]
          Length = 348

 Score = 35.0 bits (79), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 17/60 (28%), Positives = 31/60 (51%)

Query: 94  KWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKV 153
            W   R+  +   I++  + EL+   ++PV V I+EY+ ++  F       F+N +LD V
Sbjct: 277 NWEVDRIADMDMLIMQLAITELLHFPNIPVLVTINEYIDLSKLFSTPKSGTFVNGLLDAV 336


>gi|23098962|ref|NP_692428.1| hypothetical protein OB1507 [Oceanobacillus iheyensis HTE831]
 gi|22777190|dbj|BAC13463.1| hypothetical conserved protein [Oceanobacillus iheyensis HTE831]
          Length = 448

 Score = 35.0 bits (79), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 22/85 (25%), Positives = 41/85 (48%), Gaps = 3/85 (3%)

Query: 72  IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
           +++G +  +  +D  +S  +  K    +LD+ + S+LR    ++I    VP   +I E V
Sbjct: 47  VVYGSLQHQMTLDYYLSKFVKSK---KKLDIWVQSLLRMSFYQMIYLEKVPDHAVIHESV 103

Query: 132 CIAHDFFYGDEPKFINAVLDKVSRK 156
            IA    +     F+N VL  + R+
Sbjct: 104 EIAKQRGHKGISSFVNGVLRSLQRQ 128


>gi|34540589|ref|NP_905068.1| NusB family protein [Porphyromonas gingivalis W83]
 gi|34396902|gb|AAQ65967.1| NusB family protein [Porphyromonas gingivalis W83]
          Length = 364

 Score = 35.0 bits (79), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 17/60 (28%), Positives = 31/60 (51%)

Query: 94  KWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKV 153
            W   R+  +   I++  + EL+   ++PV V I+EY+ ++  F       F+N +LD V
Sbjct: 293 NWEVDRIADMDMLIMQLAIAELLHFPNIPVLVTINEYIDLSKLFSTPKSGTFVNGLLDAV 352


>gi|325662242|ref|ZP_08150857.1| ribosomal RNA small subunit methyltransferase B [Lachnospiraceae
           bacterium 4_1_37FAA]
 gi|325471494|gb|EGC74715.1| ribosomal RNA small subunit methyltransferase B [Lachnospiraceae
           bacterium 4_1_37FAA]
          Length = 452

 Score = 35.0 bits (79), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 21/84 (25%), Positives = 42/84 (50%), Gaps = 2/84 (2%)

Query: 72  IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
           ++ G ++R   ID +I+     K   +++  ++ +ILR+ V +L     VP   + +E V
Sbjct: 50  VVEGTLERMIEIDYIINQFSNVK--VNKMKPVIRTILRSAVYQLKYMDGVPDSAVCNEAV 107

Query: 132 CIAHDFFYGDEPKFINAVLDKVSR 155
            +A    +     F+N VL  ++R
Sbjct: 108 KLAEKKGFRSLKGFVNGVLRTIAR 131


>gi|260891342|ref|ZP_05902605.1| transcription antitermination factor NusB [Leptotrichia hofstadii
           F0254]
 gi|260858725|gb|EEX73225.1| transcription antitermination factor NusB [Leptotrichia hofstadii
           F0254]
          Length = 138

 Score = 35.0 bits (79), Expect = 3.6,   Method: Compositional matrix adjust.
 Identities = 23/89 (25%), Positives = 44/89 (49%), Gaps = 2/89 (2%)

Query: 65  DLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVE 124
           ++++ R  I  +++ K  +   I   L + W++ RL  I   +L+    E I    +  E
Sbjct: 42  EIDFLRSYITEIIENKDILTDRIRQVL-DGWTYERLGTIEKVLLKISFYE-ITIKDIGYE 99

Query: 125 VIISEYVCIAHDFFYGDEPKFINAVLDKV 153
           + I+E + IA  + Y D   F+N +L K+
Sbjct: 100 IAINEVLEIAKKYSYNDTKDFLNGILAKL 128


>gi|297626339|ref|YP_003688102.1| Transcription antitermination factor (N utilization substance
           protein B homolog) [Propionibacterium freudenreichii
           subsp. shermanii CIRM-BIA1]
 gi|296922104|emb|CBL56672.1| Transcription antitermination factor (N utilization substance
           protein B homolog) [Propionibacterium freudenreichii
           subsp. shermanii CIRM-BIA1]
          Length = 208

 Score = 35.0 bits (79), Expect = 3.8,   Method: Compositional matrix adjust.
 Identities = 21/90 (23%), Positives = 47/90 (52%), Gaps = 1/90 (1%)

Query: 67  EWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVI 126
           ++ R I+ G  +    I+  I   LT  W+  R+  +  ++ R  V EL +  ++ ++V 
Sbjct: 76  DFTRQILDGYSEHGHEINEHIDRALTGDWTLERMSRVDRNLARIAVWEL-DFTTIDLKVA 134

Query: 127 ISEYVCIAHDFFYGDEPKFINAVLDKVSRK 156
           ISE + +A++    +   F+N +L +++ +
Sbjct: 135 ISEAMELANELSNDESVTFLNGLLARIAEE 164


>gi|266624677|ref|ZP_06117612.1| ribosomal RNA small subunit methyltransferase B [Clostridium
           hathewayi DSM 13479]
 gi|288863456|gb|EFC95754.1| ribosomal RNA small subunit methyltransferase B [Clostridium
           hathewayi DSM 13479]
          Length = 442

 Score = 35.0 bits (79), Expect = 3.8,   Method: Compositional matrix adjust.
 Identities = 23/90 (25%), Positives = 47/90 (52%), Gaps = 3/90 (3%)

Query: 72  IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
           I+ G ++    +D +I+S  + K    ++  ++ ++LR  V +++    VP   + +E V
Sbjct: 50  IVEGTVEYTLQLDYVINSYSSVK--VKKMKPVIRTLLRMSVYQILYMDRVPDSAVCNEAV 107

Query: 132 CIAHDFFYGDEPKFINAVLDKVSR-KEEIK 160
            +A    +     F+N VL  +SR KE++K
Sbjct: 108 KLAQKRKFTGLKGFVNGVLRGISRNKEQLK 137


>gi|189347315|ref|YP_001943844.1| sun protein [Chlorobium limicola DSM 245]
 gi|189341462|gb|ACD90865.1| sun protein [Chlorobium limicola DSM 245]
          Length = 451

 Score = 35.0 bits (79), Expect = 3.8,   Method: Compositional matrix adjust.
 Identities = 21/83 (25%), Positives = 41/83 (49%), Gaps = 2/83 (2%)

Query: 72  IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
           +++GV+ R+  +D  I      +  + +   +L +ILR G  +LI    +P    ++E V
Sbjct: 51  LVNGVLRRRLTLDTFIGRYYHHR--YEKAAPVLKNILRIGAYQLIYLDRIPHWAAVNESV 108

Query: 132 CIAHDFFYGDEPKFINAVLDKVS 154
            +A  +      K +NAVL  ++
Sbjct: 109 SLARRYKGEHMAKLVNAVLRNIT 131


>gi|331086043|ref|ZP_08335126.1| ribosomal RNA small subunit methyltransferase B [Lachnospiraceae
           bacterium 9_1_43BFAA]
 gi|330406966|gb|EGG86471.1| ribosomal RNA small subunit methyltransferase B [Lachnospiraceae
           bacterium 9_1_43BFAA]
          Length = 452

 Score = 35.0 bits (79), Expect = 3.9,   Method: Compositional matrix adjust.
 Identities = 21/84 (25%), Positives = 42/84 (50%), Gaps = 2/84 (2%)

Query: 72  IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
           ++ G ++R   ID +I+     K   +++  ++ +ILR+ V +L     VP   + +E V
Sbjct: 50  VVEGTLERMIEIDYIINQFSNVK--VNKMKPVIRTILRSAVYQLKYMDGVPDSAVCNEAV 107

Query: 132 CIAHDFFYGDEPKFINAVLDKVSR 155
            +A    +     F+N VL  ++R
Sbjct: 108 KLAEKKGFRSLKGFVNGVLRTIAR 131


>gi|302671346|ref|YP_003831306.1| rRNA small subunit methyltransferase B Sun [Butyrivibrio
           proteoclasticus B316]
 gi|302395819|gb|ADL34724.1| rRNA small subunit methyltransferase B Sun [Butyrivibrio
           proteoclasticus B316]
          Length = 450

 Score = 35.0 bits (79), Expect = 3.9,   Method: Compositional matrix adjust.
 Identities = 25/97 (25%), Positives = 46/97 (47%), Gaps = 3/97 (3%)

Query: 65  DLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVE 124
           D  + + +  G ++R   ID +I S    K    ++   + +++R    +++   SVP  
Sbjct: 40  DKSFIKRVTEGCLERNIQIDYIIDSYA--KTPVRQMQPFIRALMRMSTYQIMFMDSVPDS 97

Query: 125 VIISEYVCIAHDFFYGDEPKFINAVLDKVSR-KEEIK 160
              +E V +A    +     F+N VL  VSR K++IK
Sbjct: 98  AACNEAVKLAAKHKFAGLKGFVNGVLRNVSRGKDQIK 134


>gi|134094270|ref|YP_001099345.1| transcription termination, L factor (N utilization substance
           protein B) [Herminiimonas arsenicoxydans]
 gi|133738173|emb|CAL61218.1| N utilization substance protein B homolog (Protein NusB)
           [Herminiimonas arsenicoxydans]
          Length = 156

 Score = 34.7 bits (78), Expect = 4.0,   Method: Compositional matrix adjust.
 Identities = 31/125 (24%), Positives = 58/125 (46%), Gaps = 15/125 (12%)

Query: 47  YRFCADTELDVESVYLHV---------DLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSF 97
           Y++  + E DV ++  H+         D E F  +++G + +   +   ++  +  +   
Sbjct: 29  YQWLLNNE-DVRTIENHIRQAHGFDKADAEHFDALLYGTVKQVGELRAGLAPLIDRE--I 85

Query: 98  SRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVS--- 154
           S L  +  + L  G  EL     +P +V+I+E V +   F   D  K++N VLDK +   
Sbjct: 86  SALSPVEHAALLIGAFELKNHIEIPYKVVINEAVELTKSFGGIDGHKYVNGVLDKFAAGV 145

Query: 155 RKEEI 159
           R+ EI
Sbjct: 146 REPEI 150


>gi|89898049|ref|YP_515159.1| transcription antitermination protein NusB [Chlamydophila felis
           Fe/C-56]
 gi|89331421|dbj|BAE81014.1| N utilization protein B [Chlamydophila felis Fe/C-56]
          Length = 154

 Score = 34.7 bits (78), Expect = 4.0,   Method: Compositional matrix adjust.
 Identities = 19/80 (23%), Positives = 42/80 (52%), Gaps = 1/80 (1%)

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
           ++ +   +DLLI+  + +  SF +L ++  ++LR  + E      +   ++I+E   +  
Sbjct: 71  ILAKSPELDLLIAQTV-KNTSFEKLTLMEKNVLRLALFEHFHGQHINAAILIAEATRLVK 129

Query: 136 DFFYGDEPKFINAVLDKVSR 155
            F Y +   F++AVL+ + R
Sbjct: 130 KFSYTEACSFVHAVLNDIFR 149


>gi|152979861|ref|YP_001354028.1| N utilization substance protein B [Janthinobacterium sp. Marseille]
 gi|151279938|gb|ABR88348.1| N utilization substance protein B [Janthinobacterium sp. Marseille]
          Length = 156

 Score = 34.7 bits (78), Expect = 4.2,   Method: Compositional matrix adjust.
 Identities = 35/147 (23%), Positives = 63/147 (42%), Gaps = 16/147 (10%)

Query: 8   KDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLE 67
           K+    HR   AR  A+Q LYQ  ++      +I          +T +     +   D E
Sbjct: 12  KNRTPRHR---AREFALQGLYQW-LLNNEDVRVI----------ETHIRQAHGFDKADAE 57

Query: 68  WFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVII 127
            F  +++G + +   +   ++  +  +   S L  +  + L  G  EL     +P +V+I
Sbjct: 58  HFDALLYGTVKQVGELRAGLAPLIDRE--ISALSPVEHAALLIGAFELKNHIEIPYKVVI 115

Query: 128 SEYVCIAHDFFYGDEPKFINAVLDKVS 154
           +E V +   F   D  K++N VLDK +
Sbjct: 116 NEAVELTKSFGGIDGHKYVNGVLDKFA 142


>gi|138894477|ref|YP_001124930.1| ornithine cyclodeaminase/mu-crystallin family protein [Geobacillus
           thermodenitrificans NG80-2]
 gi|134265990|gb|ABO66185.1| Ornithine cyclodeaminase/mu-crystallin family protein [Geobacillus
           thermodenitrificans NG80-2]
          Length = 327

 Score = 34.7 bits (78), Expect = 4.2,   Method: Compositional matrix adjust.
 Identities = 25/87 (28%), Positives = 39/87 (44%), Gaps = 8/87 (9%)

Query: 23  AVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYL----HVDLEWF----RVIIH 74
           A +A+ Q DI+ CST      + +      T +     YL     +D+E      R+++ 
Sbjct: 187 ANEAVRQADIVVCSTRSEQPVFSSRALQPGTHVSAIGSYLPHMRELDVETIVMADRIVVD 246

Query: 75  GVMDRKQHIDLLISSCLTEKWSFSRLD 101
            V   K     LI +  + KWSFSR+D
Sbjct: 247 TVEGAKHEAGELIQAAESGKWSFSRID 273


>gi|196247922|ref|ZP_03146624.1| Ornithine cyclodeaminase [Geobacillus sp. G11MC16]
 gi|196212706|gb|EDY07463.1| Ornithine cyclodeaminase [Geobacillus sp. G11MC16]
          Length = 327

 Score = 34.7 bits (78), Expect = 4.4,   Method: Compositional matrix adjust.
 Identities = 25/87 (28%), Positives = 39/87 (44%), Gaps = 8/87 (9%)

Query: 23  AVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYL----HVDLEWF----RVIIH 74
           A +A+ Q DI+ CST      + +      T +     YL     +D+E      R+++ 
Sbjct: 187 ANEAVRQADIVVCSTRSEQPVFSSRALQPGTHVSAIGSYLPHMRELDVETIVMADRIVVD 246

Query: 75  GVMDRKQHIDLLISSCLTEKWSFSRLD 101
            V   K     LI +  + KWSFSR+D
Sbjct: 247 TVEGAKHEAGELIQAAESGKWSFSRID 273


>gi|333031441|ref|ZP_08459502.1| NusB antitermination factor [Bacteroides coprosuis DSM 18011]
 gi|332742038|gb|EGJ72520.1| NusB antitermination factor [Bacteroides coprosuis DSM 18011]
          Length = 308

 Score = 34.7 bits (78), Expect = 4.6,   Method: Compositional matrix adjust.
 Identities = 16/72 (22%), Positives = 37/72 (51%), Gaps = 2/72 (2%)

Query: 92  TEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLD 151
           T+ W   R+ ++   +++  + E++   ++P+ V  +EY+ +A  +       FIN  LD
Sbjct: 234 TKNWELDRIALMDVVLMQCALAEVLSFPNIPLSVTFNEYLDLAKLYSTHKSGGFINGTLD 293

Query: 152 KVSRKEEIKRSG 163
            +    ++K+ G
Sbjct: 294 SIIN--QLKKEG 303


>gi|262340975|ref|YP_003283830.1| transcription antitermination factor NusB [Blattabacterium sp.
           (Blattella germanica) str. Bge]
 gi|262272312|gb|ACY40220.1| transcription antitermination factor NusB [Blattabacterium sp.
           (Blattella germanica) str. Bge]
          Length = 300

 Score = 34.7 bits (78), Expect = 4.7,   Method: Compositional matrix adjust.
 Identities = 18/76 (23%), Positives = 40/76 (52%), Gaps = 1/76 (1%)

Query: 80  KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139
           K+  + LI+  ++  W+  R+ ++   IL+  + E +   ++P +  ++EY+ I   F  
Sbjct: 210 KEEFNSLIND-ISNNWNIKRIAILDLIILQMAICEFLYFPNIPPKATMNEYIEITKIFCM 268

Query: 140 GDEPKFINAVLDKVSR 155
                FIN +LD++ +
Sbjct: 269 EKSKIFINGILDQIFK 284


>gi|323342016|ref|ZP_08082249.1| hypothetical protein HMPREF0357_10429 [Erysipelothrix rhusiopathiae
           ATCC 19414]
 gi|322464441|gb|EFY09634.1| hypothetical protein HMPREF0357_10429 [Erysipelothrix rhusiopathiae
           ATCC 19414]
          Length = 134

 Score = 34.7 bits (78), Expect = 4.9,   Method: Compositional matrix adjust.
 Identities = 29/80 (36%), Positives = 38/80 (47%), Gaps = 2/80 (2%)

Query: 72  IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
           ++  V  RK      I   LT KW F RL  I  +IL     EL   +   V VI++E V
Sbjct: 55  VVMNVEARKDIYSRAIDHYLT-KWRFDRLGFIEQAILLMACAELELGYQDKV-VIVNEAV 112

Query: 132 CIAHDFFYGDEPKFINAVLD 151
            +A DF   +  K IN V+D
Sbjct: 113 NLAKDFSDEESYKLINGVID 132


>gi|229495644|ref|ZP_04389373.1| NusB family protein [Porphyromonas endodontalis ATCC 35406]
 gi|229317414|gb|EEN83318.1| NusB family protein [Porphyromonas endodontalis ATCC 35406]
          Length = 348

 Score = 34.7 bits (78), Expect = 5.0,   Method: Compositional matrix adjust.
 Identities = 15/58 (25%), Positives = 30/58 (51%)

Query: 94  KWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLD 151
            W   R+  +   IL+  + EL+   ++P  V ++EY+ +A  +   +   F+N +LD
Sbjct: 276 NWDMDRVTDVDMIILQMALAELLSFPTIPTTVTLNEYIELAKIYSTAESGVFVNGLLD 333


>gi|218961705|ref|YP_001741480.1| N utilization substance protein B [Candidatus Cloacamonas
           acidaminovorans]
 gi|167730362|emb|CAO81274.1| N utilization substance protein B [Candidatus Cloacamonas
           acidaminovorans]
          Length = 153

 Score = 34.3 bits (77), Expect = 5.4,   Method: Compositional matrix adjust.
 Identities = 41/157 (26%), Positives = 65/157 (41%), Gaps = 25/157 (15%)

Query: 12  LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFC----------ADTE--LDVES 59
           +  RR  AR  AVQ LY ++      +E+  +Y  Y             A+ E       
Sbjct: 1   MGQRRK-AREMAVQCLYSLEF-----SEVEKDYREYGLLNEYPDILLSLAEAEHIQPNSP 54

Query: 60  VYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECH 119
           VY   D E  +  I  +   +  ID      L++ W    + ++  SIL     EL+   
Sbjct: 55  VYAFAD-ELVKNTIINIEQVESEID-----KLSDNWELEDIALLDRSILCLAAYELL-FT 107

Query: 120 SVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRK 156
             P  V+I+E + IA  F      KFIN +LD ++++
Sbjct: 108 DTPAPVVINEAIEIAKKFSSEASGKFINGILDALNKE 144


>gi|188997200|ref|YP_001931451.1| NusB antitermination factor [Sulfurihydrogenibium sp. YO3AOP1]
 gi|188932267|gb|ACD66897.1| NusB antitermination factor [Sulfurihydrogenibium sp. YO3AOP1]
          Length = 168

 Score = 34.3 bits (77), Expect = 5.7,   Method: Compositional matrix adjust.
 Identities = 42/181 (23%), Positives = 78/181 (43%), Gaps = 26/181 (14%)

Query: 3   IQDNKKDLKLSHRRGI--ARLAAVQALYQIDIIGCSTTEIISEY-ETYRFCADTELDVES 59
           ++   K LK   +R +  AR  +++ L+  D        ++ E+  T +F  + +     
Sbjct: 1   MKKKNKSLKFLRKRLLKAARDLSMRILFAYDFRKEDLFNVLEEFLNTKKFSPEIK----- 55

Query: 60  VYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECH 119
                  E+   +++   +  Q ID +I S L + W F R+  I  ++LR GV EL+  H
Sbjct: 56  -------EYVLKVVNFYNENSQEIDDIIKSHL-KNWRFERIGYIERAVLRLGVSELLIIH 107

Query: 120 SV--PVEVIISEYVCIAHDFF-----YGDEP---KFINAVLDKVSRKEEIKRSGCVSAIT 169
           S     E+   E   +  D       Y +     KF+N +L K++++ E   +     +T
Sbjct: 108 SKEESKELKDKEIRILFLDLLDLVECYTNSKLSVKFVNGILGKINKELEQNENSIHIGLT 167

Query: 170 Q 170
           Q
Sbjct: 168 Q 168


>gi|281412717|ref|YP_003346796.1| sun protein [Thermotoga naphthophila RKU-10]
 gi|281373820|gb|ADA67382.1| sun protein [Thermotoga naphthophila RKU-10]
          Length = 431

 Score = 34.3 bits (77), Expect = 5.8,   Method: Compositional matrix adjust.
 Identities = 31/122 (25%), Positives = 59/122 (48%), Gaps = 8/122 (6%)

Query: 40  IISEYETYRFCADTELD-VESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFS 98
           ++ +YE  +F    ++D V S     D  +F+ ++ GV+ +++ +D  I+  L +K    
Sbjct: 12  LLRKYEKEKFILREDVDSVLSFLDDKDRRFFKELVWGVVRKEELLDWYINQLLKKK---- 67

Query: 99  RLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEE 158
            +   +   LR G  +L+  +SVP    +SE V +     +    K +NAVL ++    E
Sbjct: 68  DIPPAVRVALRMGAYQLLFMNSVPDYAAVSETVKLVKSENFK---KLVNAVLRRLRTVPE 124

Query: 159 IK 160
            K
Sbjct: 125 PK 126


>gi|50365148|ref|YP_053573.1| transcription termination factor [Mesoplasma florum L1]
 gi|50363704|gb|AAT75689.1| transcription termination factor [Mesoplasma florum L1]
          Length = 134

 Score = 34.3 bits (77), Expect = 6.8,   Method: Compositional matrix adjust.
 Identities = 22/63 (34%), Positives = 32/63 (50%), Gaps = 1/63 (1%)

Query: 91  LTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVL 150
           L+  W + R+   + SIL  G  E+I     P  V I+E V +  +     + KF+NA L
Sbjct: 70  LSANWKWERIPTYIQSILIIGAYEII-FTPTPKAVTINELVNLVKENEVDFDYKFVNACL 128

Query: 151 DKV 153
           DKV
Sbjct: 129 DKV 131


>gi|283769473|ref|ZP_06342369.1| transcription antitermination factor NusB [Bulleidia extructa
           W1219]
 gi|283103741|gb|EFC05127.1| transcription antitermination factor NusB [Bulleidia extructa
           W1219]
          Length = 124

 Score = 33.9 bits (76), Expect = 7.4,   Method: Compositional matrix adjust.
 Identities = 26/84 (30%), Positives = 37/84 (44%), Gaps = 2/84 (2%)

Query: 68  WFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVII 127
           +F  ++    +  Q     I+  L E W+F RL  I  +IL  G  E      V   +II
Sbjct: 41  YFIRVVENAQEHIQEYTNYINQVL-ENWTFDRLGTIEKAILLIGCAEF-SLKEVAAVIII 98

Query: 128 SEYVCIAHDFFYGDEPKFINAVLD 151
            E V +A  +   D  + IN VLD
Sbjct: 99  DEAVELAKTYGEADSYRLINNVLD 122


>gi|194336038|ref|YP_002017832.1| sun protein [Pelodictyon phaeoclathratiforme BU-1]
 gi|194308515|gb|ACF43215.1| sun protein [Pelodictyon phaeoclathratiforme BU-1]
          Length = 445

 Score = 33.9 bits (76), Expect = 8.2,   Method: Compositional matrix adjust.
 Identities = 21/83 (25%), Positives = 43/83 (51%), Gaps = 2/83 (2%)

Query: 72  IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
           +++GV+  +  +D +I+     K    +   I+ +ILR GV +++  + VP    ++E V
Sbjct: 46  LVNGVLRYRLQLDFVIAQFYHHK--LEKAAPIMKNILRLGVYQILFLNKVPDWAAVNECV 103

Query: 132 CIAHDFFYGDEPKFINAVLDKVS 154
            +A  +      K +N VL K++
Sbjct: 104 KLARKYKGERMSKLVNGVLRKIT 126


>gi|212550794|ref|YP_002309111.1| transcription termination factor NusB [Candidatus Azobacteroides
           pseudotrichonymphae genomovar. CFP2]
 gi|212549032|dbj|BAG83700.1| transcription termination factor NusB [Candidatus Azobacteroides
           pseudotrichonymphae genomovar. CFP2]
          Length = 305

 Score = 33.9 bits (76), Expect = 8.4,   Method: Compositional matrix adjust.
 Identities = 14/61 (22%), Positives = 32/61 (52%)

Query: 93  EKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDK 152
           + W   R+ ++   I++  + EL    ++P++V ++EY+ +A  +       FIN +L  
Sbjct: 236 KNWDKKRIALLDLIIMQMALAELNNFPAIPLKVTLNEYIDLARYYSTPKSTSFINGILQA 295

Query: 153 V 153
           +
Sbjct: 296 I 296


>gi|144575303|gb|AAZ53536.2| hypothetical protein MHP7448_0162 [Mycoplasma hyopneumoniae 7448]
          Length = 216

 Score = 33.9 bits (76), Expect = 8.8,   Method: Compositional matrix adjust.
 Identities = 28/77 (36%), Positives = 40/77 (51%), Gaps = 5/77 (6%)

Query: 86  LISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDF-FYGD-EP 143
           +I+  L   W++ R+  ++ SIL  G  EL     VP  ++ +E V I   F   GD E 
Sbjct: 138 VINLQLKSNWNWERILPLIRSILLVGAAELF---FVPSRIVFNEAVEITKIFSIAGDNEF 194

Query: 144 KFINAVLDKVSRKEEIK 160
            F+NAVL K+    EIK
Sbjct: 195 CFVNAVLQKIYNYYEIK 211


>gi|325971258|ref|YP_004247449.1| NusB antitermination factor [Spirochaeta sp. Buddy]
 gi|324026496|gb|ADY13255.1| NusB antitermination factor [Spirochaeta sp. Buddy]
          Length = 152

 Score = 33.9 bits (76), Expect = 8.9,   Method: Compositional matrix adjust.
 Identities = 37/141 (26%), Positives = 66/141 (46%), Gaps = 7/141 (4%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           R  AR  A+Q LY +D       E+   +    F  +TE + + +   V + +   ++ G
Sbjct: 4   RHKARELALQTLYAMDF----NKELDVLHIPAIFSGNTEEEHDQLEEEVKI-YGMYLVRG 58

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
            ++    ID LIS     +    R+D++  +ILR  V   +   ++   +II E V ++ 
Sbjct: 59  TLENLFEIDELISKYSLNR-PIERIDIVDRNILRMSVF-CLRFGNIHPHIIIDEAVKLSQ 116

Query: 136 DFFYGDEPKFINAVLDKVSRK 156
           DF      KFIN +LD + ++
Sbjct: 117 DFSTEVNYKFINGILDTMQKQ 137


>gi|72080501|ref|YP_287559.1| hypothetical protein MHP7448_0162 [Mycoplasma hyopneumoniae 7448]
          Length = 219

 Score = 33.9 bits (76), Expect = 8.9,   Method: Compositional matrix adjust.
 Identities = 28/77 (36%), Positives = 40/77 (51%), Gaps = 5/77 (6%)

Query: 86  LISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDF-FYGD-EP 143
           +I+  L   W++ R+  ++ SIL  G  EL     VP  ++ +E V I   F   GD E 
Sbjct: 141 VINLQLKSNWNWERILPLIRSILLVGAAEL---FFVPSRIVFNEAVEITKIFSIAGDNEF 197

Query: 144 KFINAVLDKVSRKEEIK 160
            F+NAVL K+    EIK
Sbjct: 198 CFVNAVLQKIYNYYEIK 214


>gi|71893514|ref|YP_278960.1| hypothetical protein MHJ_0158 [Mycoplasma hyopneumoniae J]
          Length = 199

 Score = 33.5 bits (75), Expect = 9.2,   Method: Compositional matrix adjust.
 Identities = 28/77 (36%), Positives = 40/77 (51%), Gaps = 5/77 (6%)

Query: 86  LISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDF-FYGD-EP 143
           +I+  L   W++ R+  ++ SIL  G  EL     VP  ++ +E V I   F   GD E 
Sbjct: 121 VINLQLKSNWNWERILPLIRSILLVGAAELF---FVPSRIVFNEAVEITKIFSIAGDNEF 177

Query: 144 KFINAVLDKVSRKEEIK 160
            F+NAVL K+    EIK
Sbjct: 178 CFVNAVLQKIYNYYEIK 194


>gi|312601103|gb|ADQ90358.1| hypothetical protein MHP168_141 [Mycoplasma hyopneumoniae 168]
          Length = 231

 Score = 33.5 bits (75), Expect = 9.5,   Method: Compositional matrix adjust.
 Identities = 27/77 (35%), Positives = 39/77 (50%), Gaps = 5/77 (6%)

Query: 86  LISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDF-FYGDEPK 144
           +I+  L   W++ R+  ++ SIL  G  EL     VP  ++ +E V I   F   GD   
Sbjct: 153 VINLQLKSNWNWERILPLIRSILLVGAAELF---FVPSRIVFNEAVEITKIFSIAGDNEF 209

Query: 145 -FINAVLDKVSRKEEIK 160
            F+NAVL K+    EIK
Sbjct: 210 CFVNAVLQKIYNYYEIK 226


>gi|255325951|ref|ZP_05367041.1| ribosomal RNA small subunit methyltransferase B [Rothia
           mucilaginosa ATCC 25296]
 gi|255296966|gb|EET76293.1| ribosomal RNA small subunit methyltransferase B [Rothia
           mucilaginosa ATCC 25296]
          Length = 659

 Score = 33.5 bits (75), Expect = 9.9,   Method: Composition-based stats.
 Identities = 23/94 (24%), Positives = 43/94 (45%), Gaps = 3/94 (3%)

Query: 63  HVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVP 122
           H D  +   + +G +  +   D ++S C+       ++      +LR GV +L+    VP
Sbjct: 198 HRDAGFATELTYGTLRHQGTYDAILSRCVDR--PIEKVGTTTLIVLRMGVHQLLNMR-VP 254

Query: 123 VEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRK 156
               +++ V +A +        FINAVL +VS +
Sbjct: 255 AHAALNQSVSLAREKIGAGPASFINAVLRRVSER 288


>gi|237756907|ref|ZP_04585380.1| transcription termination factor [Sulfurihydrogenibium
           yellowstonense SS-5]
 gi|237690928|gb|EEP60063.1| transcription termination factor [Sulfurihydrogenibium
           yellowstonense SS-5]
          Length = 169

 Score = 33.5 bits (75), Expect = 10.0,   Method: Compositional matrix adjust.
 Identities = 38/163 (23%), Positives = 71/163 (43%), Gaps = 24/163 (14%)

Query: 19  ARLAAVQALYQIDIIGCSTTEIISEY-ETYRFCADTELDVESVYLHVDLEWFRVIIHGVM 77
           AR  +++ L+  D        ++ E+  T +F ++ +            E+   +I+   
Sbjct: 20  ARDLSMRVLFAYDFRKEDLFNVLEEFLNTKKFPSEIK------------EYVLKVINFYN 67

Query: 78  DRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSV--PVEVIISEYVCIAH 135
           +  Q +D +I S L + W F R+  I  ++LR GV EL+  HS     E+   E   +  
Sbjct: 68  ENSQEVDDIIKSHL-KNWRFERIGYIERAVLRLGVSELLIIHSKEESKELKDKEIRILFL 126

Query: 136 DFF-----YGDEP---KFINAVLDKVSRKEEIKRSGCVSAITQ 170
           D       Y +     KF+N +L K++++ E   +     +TQ
Sbjct: 127 DLLDLVECYTNSKLSVKFVNGILGKINKELEQNENSIHIGLTQ 169


Searching..................................................done


Results from round 2




>gi|254780345|ref|YP_003064758.1| transcription antitermination protein NusB [Candidatus Liberibacter
           asiaticus str. psy62]
 gi|254040022|gb|ACT56818.1| transcription antitermination protein NusB [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 170

 Score =  245 bits (627), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 170/170 (100%), Positives = 170/170 (100%)

Query: 1   MTIQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESV 60
           MTIQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESV
Sbjct: 1   MTIQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESV 60

Query: 61  YLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHS 120
           YLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHS
Sbjct: 61  YLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHS 120

Query: 121 VPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRSGCVSAITQ 170
           VPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRSGCVSAITQ
Sbjct: 121 VPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRSGCVSAITQ 170


>gi|315122231|ref|YP_004062720.1| transcription antitermination protein NusB [Candidatus Liberibacter
           solanacearum CLso-ZC1]
 gi|313495633|gb|ADR52232.1| transcription antitermination protein NusB [Candidatus Liberibacter
           solanacearum CLso-ZC1]
          Length = 170

 Score =  219 bits (560), Expect = 7e-56,   Method: Composition-based stats.
 Identities = 121/170 (71%), Positives = 143/170 (84%)

Query: 1   MTIQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESV 60
           MTIQDNK  +KL+ RRGIAR++AVQALYQIDI+GCS  ++ISEYE +RFCAD ++D +++
Sbjct: 1   MTIQDNKTTVKLALRRGIARISAVQALYQIDIVGCSLVDVISEYEMHRFCADKDIDEDNI 60

Query: 61  YLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHS 120
           Y  VDLEWF  I+HGV+  K+ +D LISSCLTEKWSFSRLD+ILC+ILRAGV ELIECHS
Sbjct: 61  YSQVDLEWFHTIMHGVVKNKELVDSLISSCLTEKWSFSRLDLILCAILRAGVFELIECHS 120

Query: 121 VPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRSGCVSAITQ 170
           VPV VIISEYVCIAHDF YGDEPKF+NAVLDKVSR  E++     SAI Q
Sbjct: 121 VPVRVIISEYVCIAHDFLYGDEPKFVNAVLDKVSRTPEVQSKRSDSAIIQ 170


>gi|222148209|ref|YP_002549166.1| transcription antitermination protein NusB [Agrobacterium vitis S4]
 gi|254772608|sp|B9JV80|NUSB_AGRVS RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|221735197|gb|ACM36160.1| transcription antitermination factor NusB [Agrobacterium vitis S4]
          Length = 160

 Score =  196 bits (500), Expect = 7e-49,   Method: Composition-based stats.
 Identities = 74/160 (46%), Positives = 107/160 (66%), Gaps = 3/160 (1%)

Query: 1   MTIQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESV 60
           MT ++NK  +K +++RG ARLAAVQALYQ+DI G    E+++EYET+R   + + +    
Sbjct: 1   MTTENNKPPVKTANQRGAARLAAVQALYQMDIGGTGVLEVVAEYETHRLGQEIDGE---T 57

Query: 61  YLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHS 120
           YL  D  WFR I+ GV+  +  ID LI   L + WS +R+D  + +ILRAG  EL+E   
Sbjct: 58  YLKADASWFRSIVAGVVRDQTKIDPLIRQALQDDWSLARVDSTVRAILRAGTFELLERKD 117

Query: 121 VPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIK 160
           VP+ VI++EYV IAH FF  DEPK +NAVLD+++++  + 
Sbjct: 118 VPIAVIVTEYVEIAHAFFQEDEPKLVNAVLDRIAKQVRVP 157


>gi|222085516|ref|YP_002544046.1| transcription antitermination factor NusB [Agrobacterium
           radiobacter K84]
 gi|254772607|sp|B9JCY3|NUSB_AGRRK RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|221722964|gb|ACM26120.1| transcription antitermination factor NusB [Agrobacterium
           radiobacter K84]
          Length = 160

 Score =  196 bits (500), Expect = 7e-49,   Method: Composition-based stats.
 Identities = 74/156 (47%), Positives = 106/156 (67%), Gaps = 3/156 (1%)

Query: 1   MTIQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESV 60
           M+ QDN++  K +++RG ARLAAVQALYQ+DI G    E+++EYE +R   + + D    
Sbjct: 1   MSNQDNERPAKTANQRGAARLAAVQALYQMDIGGTGVLEVVAEYEAHRLGQELDGD---T 57

Query: 61  YLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHS 120
           YL  D  WFR I+ GV+  +  +D LI S L + W+ SRLD  + +ILRAG  E+++   
Sbjct: 58  YLKADASWFRSIVSGVVREQTRLDPLIGSALQDDWALSRLDSTVRAILRAGTFEILDRKD 117

Query: 121 VPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRK 156
           VPV VI++EYV IAH FF  DEPK +NAVLD+++++
Sbjct: 118 VPVAVIVTEYVEIAHAFFDDDEPKLVNAVLDRIAKQ 153


>gi|227821538|ref|YP_002825508.1| transcription antitermination protein NusB [Sinorhizobium fredii
           NGR234]
 gi|254772651|sp|C3M9I9|NUSB_RHISN RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|227340537|gb|ACP24755.1| N utilization substance protein B [Sinorhizobium fredii NGR234]
          Length = 160

 Score =  194 bits (495), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 72/161 (44%), Positives = 106/161 (65%), Gaps = 3/161 (1%)

Query: 1   MTIQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESV 60
           MT   + + LK +++RG ARLAAVQALYQ++I G    EI++E+E +R   + + +    
Sbjct: 1   MTNTPSDQPLKQANQRGAARLAAVQALYQMEIGGTGVLEIVAEFEAHRLGQELDGE---T 57

Query: 61  YLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHS 120
           YL  D  WFR I+ GV+  ++ +D LI S L + W+ SRLD  + +ILRAG  EL+E   
Sbjct: 58  YLKADASWFRSIVSGVVRDQRKLDPLIGSALQDDWALSRLDSTVRAILRAGTFELLERKD 117

Query: 121 VPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKR 161
           VPV VI++EYV IA  FF  +EPK +NAVLD+++++   +R
Sbjct: 118 VPVAVIVTEYVEIAKAFFEDEEPKLVNAVLDRIAKQIRGER 158


>gi|90419413|ref|ZP_01227323.1| putative transcription termination protein NusB [Aurantimonas
           manganoxydans SI85-9A1]
 gi|90336350|gb|EAS50091.1| putative transcription termination protein NusB [Aurantimonas
           manganoxydans SI85-9A1]
          Length = 177

 Score =  191 bits (487), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 67/165 (40%), Positives = 101/165 (61%), Gaps = 4/165 (2%)

Query: 1   MTIQDNK-KDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVES 59
           M+  D + + +K +++RG ARLAAVQALYQ+++ G +  E ++EYE +R  ++ + +   
Sbjct: 1   MSSSDPQARPVKQANKRGAARLAAVQALYQMEVGGTALLETVAEYENFRLGSEIDGE--- 57

Query: 60  VYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECH 119
            Y   D  WFR ++ GV+  +  ID  I + L   W  SR+D  L +ILRAG  EL    
Sbjct: 58  TYREADAGWFRDVVSGVVRSQTEIDPKIHASLPTDWPLSRIDTTLRAILRAGTYELSNRK 117

Query: 120 SVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRSGC 164
            VPV VI+SEY+ +A  F+ GDEP  +NAVLD+V+R    ++ G 
Sbjct: 118 DVPVAVIVSEYIDVAKAFYTGDEPGLVNAVLDRVARSVRAEKPGE 162


>gi|150396046|ref|YP_001326513.1| transcription antitermination protein NusB [Sinorhizobium medicae
           WSM419]
 gi|166215721|sp|A6U7P8|NUSB_SINMW RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|150027561|gb|ABR59678.1| NusB antitermination factor [Sinorhizobium medicae WSM419]
          Length = 160

 Score =  190 bits (484), Expect = 5e-47,   Method: Composition-based stats.
 Identities = 72/161 (44%), Positives = 105/161 (65%), Gaps = 3/161 (1%)

Query: 1   MTIQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESV 60
           MT   + + LK  ++RG ARLAAVQALYQ+D+ G    EI++EYE +R   + + D    
Sbjct: 1   MTNTPSDQPLKQVNQRGAARLAAVQALYQMDVGGTGVLEIVAEYEEHRLGKELDGD---T 57

Query: 61  YLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHS 120
           YL  D  WFR I+ GV+  ++ +D LI S L + W+ SRLD  + +ILRAG  E++E   
Sbjct: 58  YLRADASWFRSIVAGVVRDQRKLDPLIGSALQDDWALSRLDSTVRAILRAGTFEILERKD 117

Query: 121 VPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKR 161
           VPV VI++EYV IA  FF  +EPK +NAVLD+++++   ++
Sbjct: 118 VPVPVIVTEYVEIAKAFFQDEEPKLVNAVLDRIAKQVRGEQ 158


>gi|15964969|ref|NP_385322.1| transcription antitermination protein NusB [Sinorhizobium meliloti
           1021]
 gi|307301040|ref|ZP_07580809.1| NusB antitermination factor [Sinorhizobium meliloti BL225C]
 gi|307317774|ref|ZP_07597212.1| NusB antitermination factor [Sinorhizobium meliloti AK83]
 gi|22095960|sp|Q92QT9|NUSB_RHIME RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|15074148|emb|CAC45795.1| Putative N utilization substance protein B [Sinorhizobium meliloti
           1021]
 gi|306896536|gb|EFN27284.1| NusB antitermination factor [Sinorhizobium meliloti AK83]
 gi|306903995|gb|EFN34581.1| NusB antitermination factor [Sinorhizobium meliloti BL225C]
          Length = 160

 Score =  190 bits (483), Expect = 6e-47,   Method: Composition-based stats.
 Identities = 72/156 (46%), Positives = 103/156 (66%), Gaps = 3/156 (1%)

Query: 1   MTIQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESV 60
           MT   + + LK  ++RG ARLAAVQALYQ+D+ G    EI++EYE +R   + + D    
Sbjct: 1   MTNTPSDQPLKQVNQRGAARLAAVQALYQMDVGGTGVLEIVAEYEEHRLGKELDGD---T 57

Query: 61  YLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHS 120
           YL  D  WFR I+ GV+  ++ +D LI S L + W+ SRLD  + +ILRAG  E++E   
Sbjct: 58  YLRADASWFRSIVAGVVRDQRKLDPLIGSALQDDWALSRLDSTVRAILRAGTFEILERKD 117

Query: 121 VPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRK 156
           VPV VI++EYV IA  FF  +EPK +NAVLD+++++
Sbjct: 118 VPVPVIVTEYVEIAKAFFQDEEPKLVNAVLDRIAKQ 153


>gi|319784157|ref|YP_004143633.1| transcription antitermination factor NusB [Mesorhizobium ciceri
           biovar biserrulae WSM1271]
 gi|317170045|gb|ADV13583.1| transcription antitermination factor NusB [Mesorhizobium ciceri
           biovar biserrulae WSM1271]
          Length = 166

 Score =  189 bits (482), Expect = 9e-47,   Method: Composition-based stats.
 Identities = 74/164 (45%), Positives = 106/164 (64%), Gaps = 3/164 (1%)

Query: 4   QDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLH 63
              +  ++ +++RG ARLAAVQALYQ+D+ G    EI +EYE +R   + +    ++Y  
Sbjct: 6   SPGQPAMRHANKRGAARLAAVQALYQMDVAGSGVFEITAEYEAFRLGKEVDG---ALYRE 62

Query: 64  VDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPV 123
            D +WFR I+ GV++ ++ ID +I   LTE W  SRLD  L +ILRAGV EL++   VPV
Sbjct: 63  ADAQWFRAILAGVVENQKTIDPIIRQALTEDWPLSRLDSTLRAILRAGVYELMKREDVPV 122

Query: 124 EVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRSGCVSA 167
            VI+SEYV IA  F+  DEPK +NAVLD+VSR+   +  G  ++
Sbjct: 123 AVIVSEYVDIAKAFYEEDEPKLVNAVLDRVSRRVRGEGRGKDAS 166


>gi|304391939|ref|ZP_07373881.1| transcription antitermination factor NusB [Ahrensia sp. R2A130]
 gi|303296168|gb|EFL90526.1| transcription antitermination factor NusB [Ahrensia sp. R2A130]
          Length = 186

 Score =  189 bits (480), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 68/162 (41%), Positives = 100/162 (61%), Gaps = 6/162 (3%)

Query: 6   NKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVD 65
            ++ +K +++RG ARL+AVQALYQ+DI G   TE+++EYE +R   + + +    YL  D
Sbjct: 4   KERAMKPANKRGSARLSAVQALYQMDIGGAGLTEVVAEYENFRLGHEIDGE---TYLDAD 60

Query: 66  LEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEV 125
             WFR I+ GV+  ++ ID +I   LT+ W  SR+D  L ++LRA V ELI    V   V
Sbjct: 61  PSWFRGIVGGVVRDQKKIDPVIHDALTKDWPLSRIDSTLRAVLRAAVFELINRPDVSARV 120

Query: 126 IISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRSGCVSA 167
           ++SEY+ +   FF  DEPK +N VLDKV+R+    R G +  
Sbjct: 121 VVSEYIEVTKAFFESDEPKMVNGVLDKVARQL---RDGELDP 159


>gi|159184647|ref|NP_354190.2| transcription antitermination protein NusB [Agrobacterium
           tumefaciens str. C58]
 gi|22095943|sp|Q8UG69|NUSB_AGRT5 RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|159139945|gb|AAK86975.2| Putative transcription antitermination protein NusB [Agrobacterium
           tumefaciens str. C58]
          Length = 165

 Score =  187 bits (476), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 73/160 (45%), Positives = 103/160 (64%), Gaps = 5/160 (3%)

Query: 4   QDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLH 63
           +  +  +K +++RG ARLAAVQALYQ+D+ G    E+++EYE +R   + + D    YL 
Sbjct: 9   EPRQPSVKPANQRGAARLAAVQALYQMDVGGTGVMEVVAEYEAHRLGQEVDGD---TYLK 65

Query: 64  VDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPV 123
            D  WFR I+ GV+  +  ID L+ S L E W  SRLD  + +ILRAG  E++E   VPV
Sbjct: 66  ADPSWFRSIVSGVVRDQTKIDPLVRSALLEDWPLSRLDATVRAILRAGTFEILERKDVPV 125

Query: 124 EVIISEYVCIAHDFFYGDEPKFINAVLDKVSRK--EEIKR 161
            VI++EYV IA  FF  DEPK +NAVLD+++++   E KR
Sbjct: 126 AVIVTEYVEIARAFFEHDEPKLVNAVLDRIAKQVRGEAKR 165


>gi|319898989|ref|YP_004159082.1| N utilization substance protein B [Bartonella clarridgeiae 73]
 gi|319402953|emb|CBI76504.1| N utilization substance protein B [Bartonella clarridgeiae 73]
          Length = 156

 Score =  187 bits (476), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 77/156 (49%), Positives = 105/156 (67%), Gaps = 3/156 (1%)

Query: 1   MTIQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESV 60
           M    +K  L+L+++RG ARLAAVQALYQ+DIIG    EII+EYE YR   + + D    
Sbjct: 1   MAYIKSKDSLRLANKRGAARLAAVQALYQMDIIGTGVIEIIAEYEAYRLGKNIDGDQ--- 57

Query: 61  YLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHS 120
           YL  D +WF  II GV+  ++ +D ++   L+E+W+ SRLD  L +ILRAG+ ELI    
Sbjct: 58  YLDADFQWFCSIIVGVVKDQKQLDPMLHQKLSEEWALSRLDSTLRAILRAGLWELINRKD 117

Query: 121 VPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRK 156
           VPV VII+EYV IA  FF  DEP+ +NAVLD ++++
Sbjct: 118 VPVAVIINEYVDIAKAFFESDEPRLVNAVLDNIAKE 153


>gi|327191850|gb|EGE58847.1| transcription antitermination protein B [Rhizobium etli CNPAF512]
          Length = 160

 Score =  187 bits (476), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 70/162 (43%), Positives = 107/162 (66%), Gaps = 3/162 (1%)

Query: 1   MTIQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESV 60
           M+ +  ++ +K +++RG ARLAAVQALYQ+D+ G    EI++EYE +R   + +    + 
Sbjct: 1   MSDEKTERPVKTANQRGAARLAAVQALYQMDVGGTGVLEIVAEYEAHRLGQEIDG---AT 57

Query: 61  YLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHS 120
           YL  D  WFR I+ GV+  +  +D LI++ L + W+ SRLD  + +ILRAGV EL++   
Sbjct: 58  YLKADAGWFRSIVSGVVRDQVRLDPLIAAALQDDWALSRLDSTVRAILRAGVFELLDRKD 117

Query: 121 VPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRS 162
           VPV VI++EYV IA  FF  DEPK +NAVLD+++++   +  
Sbjct: 118 VPVAVIVTEYVEIAQAFFDDDEPKLVNAVLDRIAKQVRGEAK 159


>gi|190891211|ref|YP_001977753.1| transcription antitermination protein B [Rhizobium etli CIAT 652]
 gi|218514737|ref|ZP_03511577.1| transcription antitermination protein NusB [Rhizobium etli 8C-3]
 gi|238692516|sp|B3PVD4|NUSB_RHIE6 RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|190696490|gb|ACE90575.1| transcription antitermination protein B [Rhizobium etli CIAT 652]
          Length = 160

 Score =  187 bits (475), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 70/162 (43%), Positives = 107/162 (66%), Gaps = 3/162 (1%)

Query: 1   MTIQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESV 60
           M+ +  ++ +K +++RG ARLAAVQALYQ+D+ G    EI++EYE +R   + +    + 
Sbjct: 1   MSDEKTERPVKTANQRGAARLAAVQALYQMDVGGTGVLEIVAEYEAHRLGQEIDG---AT 57

Query: 61  YLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHS 120
           YL  D  WFR I+ GV+  +  +D LI++ L + W+ SRLD  + +ILRAGV EL++   
Sbjct: 58  YLKADAGWFRSIVSGVVRDQVRLDPLIAAALQDDWALSRLDSTVRAILRAGVFELLDRKD 117

Query: 121 VPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRS 162
           VPV VI++EYV IA  FF  DEPK +NAVLD+++++   +  
Sbjct: 118 VPVAVIVTEYVEIAQAFFDDDEPKLVNAVLDRIAKQVRSEAK 159


>gi|254718887|ref|ZP_05180698.1| transcription antitermination protein NusB [Brucella sp. 83/13]
 gi|265983873|ref|ZP_06096608.1| conserved hypothetical protein [Brucella sp. 83/13]
 gi|306838197|ref|ZP_07471051.1| transcription antitermination factor NusB [Brucella sp. NF 2653]
 gi|264662465|gb|EEZ32726.1| conserved hypothetical protein [Brucella sp. 83/13]
 gi|306406706|gb|EFM62931.1| transcription antitermination factor NusB [Brucella sp. NF 2653]
          Length = 171

 Score =  187 bits (475), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 68/158 (43%), Positives = 97/158 (61%), Gaps = 7/158 (4%)

Query: 1   MTIQDNKKD----LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELD 56
           M      +      + +++RG+ARLAAVQALYQ+D+ G    E+++EYE +R   + +  
Sbjct: 1   MNSTPEGRPTPNLPRTANKRGVARLAAVQALYQMDVAGTGVMEVVAEYEAFRLGKEVDG- 59

Query: 57  VESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELI 116
             + YL  D +WFR I+ GV++ +  +D +I   LTE W  SRLD  L +ILRAG  EL 
Sbjct: 60  --TQYLDADPQWFRAIVAGVVEDQLKLDPMIHQALTEGWPLSRLDSTLRAILRAGAWELK 117

Query: 117 ECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVS 154
               VP  VI+SEYV IA  F+  DEPK +NAVLD+++
Sbjct: 118 ARKDVPTAVIVSEYVDIAKAFYTEDEPKLVNAVLDRLA 155


>gi|325292546|ref|YP_004278410.1| transcription antitermination protein NusB [Agrobacterium sp.
           H13-3]
 gi|325060399|gb|ADY64090.1| transcription antitermination protein NusB [Agrobacterium sp.
           H13-3]
          Length = 165

 Score =  187 bits (475), Expect = 6e-46,   Method: Composition-based stats.
 Identities = 73/160 (45%), Positives = 103/160 (64%), Gaps = 5/160 (3%)

Query: 4   QDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLH 63
           +  +  +K +++RG ARLAAVQALYQ+D+ G    E+++EYE +R   + + D    YL 
Sbjct: 9   EPRQPSVKPANQRGAARLAAVQALYQMDVGGTGVMEVVAEYEAHRLGQEVDGD---TYLK 65

Query: 64  VDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPV 123
            D  WFR I+ GV+  +  ID L+ S L E W  SRLD  + +ILRAG  E++E   VPV
Sbjct: 66  ADPSWFRSIVSGVVRDQTKIDPLVRSALLEDWPLSRLDATVRAILRAGAFEILERKDVPV 125

Query: 124 EVIISEYVCIAHDFFYGDEPKFINAVLDKVSRK--EEIKR 161
            VI++EYV IA  FF  DEPK +NAVLD+++++   E KR
Sbjct: 126 AVIVTEYVEIARAFFEHDEPKLVNAVLDRIAKQVRGEAKR 165


>gi|260466838|ref|ZP_05813022.1| NusB antitermination factor [Mesorhizobium opportunistum WSM2075]
 gi|259029340|gb|EEW30632.1| NusB antitermination factor [Mesorhizobium opportunistum WSM2075]
          Length = 166

 Score =  186 bits (474), Expect = 7e-46,   Method: Composition-based stats.
 Identities = 74/164 (45%), Positives = 106/164 (64%), Gaps = 3/164 (1%)

Query: 4   QDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLH 63
              +  ++ +++RG ARLAAVQALYQ+D+ G    EI +EYE +R   + +    ++Y  
Sbjct: 6   SPGQPAVRHANKRGAARLAAVQALYQMDVAGSGVFEITAEYEAFRLGKEVDG---ALYRE 62

Query: 64  VDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPV 123
            D +WFR I+ GV++ ++ ID +I   LTE W  SRLD  L +ILRAGV EL++   VPV
Sbjct: 63  ADAQWFRAILTGVVEDQKTIDPIIRQSLTEDWPLSRLDSTLRAILRAGVYELMKREDVPV 122

Query: 124 EVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRSGCVSA 167
            VI+SEYV IA  F+  DEPK +NAVLD+VSR+   +  G  ++
Sbjct: 123 AVIVSEYVDIAKAFYEEDEPKLVNAVLDRVSRRVRGEGRGKDAS 166


>gi|163759209|ref|ZP_02166295.1| transcription antitermination protein NusB [Hoeflea phototrophica
           DFL-43]
 gi|162283613|gb|EDQ33898.1| transcription antitermination protein NusB [Hoeflea phototrophica
           DFL-43]
          Length = 164

 Score =  186 bits (474), Expect = 7e-46,   Method: Composition-based stats.
 Identities = 71/161 (44%), Positives = 105/161 (65%), Gaps = 3/161 (1%)

Query: 2   TIQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVY 61
           T Q+ +  +K +++RG ARLAAVQALYQ+DI G    E+++EYE +R   + + +    Y
Sbjct: 3   TEQNPEPAVKTANQRGAARLAAVQALYQMDIGGAGVLEVVAEYEAHRLGHEIDGEQ---Y 59

Query: 62  LHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSV 121
              D  WF+ ++ GV++ ++ +D +I S LTE W  SRLD  L +ILRAG  EL     V
Sbjct: 60  RPADAAWFKAVVSGVVENQRALDPVIRSSLTEDWPLSRLDATLRAILRAGAWELSSKKDV 119

Query: 122 PVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRS 162
           PV VI++EYV +A  FF  DEPK +NAVLD+++RK   +++
Sbjct: 120 PVAVIVTEYVDVARAFFEEDEPKIVNAVLDRLARKYRAEQT 160


>gi|239831595|ref|ZP_04679924.1| transcription antitermination factor NusB [Ochrobactrum intermedium
           LMG 3301]
 gi|239823862|gb|EEQ95430.1| transcription antitermination factor NusB [Ochrobactrum intermedium
           LMG 3301]
          Length = 168

 Score =  186 bits (473), Expect = 8e-46,   Method: Composition-based stats.
 Identities = 67/151 (44%), Positives = 97/151 (64%), Gaps = 3/151 (1%)

Query: 4   QDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLH 63
           +      +++++RG+ARLAAVQALYQ+D+ G    E+++EYE +R   + +    + YL 
Sbjct: 8   RPTPNAPRMANKRGVARLAAVQALYQMDVAGTGVLEVVAEYEAFRLGKEVDG---TQYLD 64

Query: 64  VDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPV 123
            D +WFR I+ GV+D +  +D +I   LTE W  SRLD  L +ILRAG  EL     VP 
Sbjct: 65  ADPQWFRAIVAGVVDEQLKLDPMIHQALTEDWPLSRLDSTLRAILRAGAWELQTRKDVPT 124

Query: 124 EVIISEYVCIAHDFFYGDEPKFINAVLDKVS 154
            VI+SEYV IA  F+  +EPK +NAVLD+++
Sbjct: 125 AVIVSEYVDIAKAFYTEEEPKLVNAVLDRLA 155


>gi|209548794|ref|YP_002280711.1| transcription antitermination protein NusB [Rhizobium leguminosarum
           bv. trifolii WSM2304]
 gi|238055477|sp|B5ZXV2|NUSB_RHILW RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|209534550|gb|ACI54485.1| NusB antitermination factor [Rhizobium leguminosarum bv. trifolii
           WSM2304]
          Length = 160

 Score =  186 bits (473), Expect = 9e-46,   Method: Composition-based stats.
 Identities = 69/160 (43%), Positives = 104/160 (65%), Gaps = 3/160 (1%)

Query: 1   MTIQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESV 60
           M     ++ +K +++RG ARLAAVQALYQ+D+ G    EI++EYE +R   + +    + 
Sbjct: 1   MNDDKTERPVKTANQRGAARLAAVQALYQMDVGGTGVLEIVAEYEAHRLGQELDG---AT 57

Query: 61  YLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHS 120
           YL  D  WFR I+ GV+  +  +D LI++ L + W+ SRLD  + +ILRAGV E+ +   
Sbjct: 58  YLKADAGWFRSIVSGVVRDQTRLDPLIAAALQDDWALSRLDSTVRAILRAGVFEITDRKD 117

Query: 121 VPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIK 160
           VPV VI++EYV IA  FF  DEPK +NAVLD+++++   +
Sbjct: 118 VPVAVIVTEYVEIAQAFFDDDEPKLVNAVLDRIAKQVRGE 157


>gi|116251399|ref|YP_767237.1| transcription antitermination protein NusB [Rhizobium leguminosarum
           bv. viciae 3841]
 gi|119390806|sp|Q1MIT2|NUSB_RHIL3 RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|115256047|emb|CAK07128.1| putative N utilization substance protein B [Rhizobium leguminosarum
           bv. viciae 3841]
          Length = 160

 Score =  186 bits (473), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 69/162 (42%), Positives = 104/162 (64%), Gaps = 3/162 (1%)

Query: 1   MTIQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESV 60
           M     ++ +K +++RG ARLAAVQALYQ+D+ G    EI++EYE +R   + + +    
Sbjct: 1   MNDDKTERPVKTANQRGAARLAAVQALYQMDVGGTGVLEIVAEYEAHRLGQEIDGE---T 57

Query: 61  YLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHS 120
           YL  D  WFR I+ GV+  +  +D LI++ L + W+ SRLD  + +ILRAGV E+ +   
Sbjct: 58  YLKADAAWFRSIVSGVVRDQVRLDPLIAAALQDDWALSRLDSTVRAILRAGVFEITDRKD 117

Query: 121 VPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRS 162
           VPV VI++EYV IA  FF  DEPK +NAVLD+++++   +  
Sbjct: 118 VPVAVIVTEYVEIAQAFFDDDEPKLVNAVLDRIAKQVRGEPK 159


>gi|86357164|ref|YP_469056.1| transcription antitermination protein NusB [Rhizobium etli CFN 42]
 gi|119390805|sp|Q2KA07|NUSB_RHIEC RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|86281266|gb|ABC90329.1| transcription antitermination protein B [Rhizobium etli CFN 42]
          Length = 160

 Score =  186 bits (473), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 70/162 (43%), Positives = 104/162 (64%), Gaps = 3/162 (1%)

Query: 1   MTIQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESV 60
           M     ++ +K +++RG ARLAAVQALYQ+D+ G    EI++EYE +R   + +    + 
Sbjct: 1   MNDDKTERPVKTANQRGAARLAAVQALYQMDVGGTGVLEIVAEYEAHRLGQEIDG---AT 57

Query: 61  YLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHS 120
           YL  D  WFR I+ GV+  +  +D LI+  L + W+ SRLD  + +ILRAGV EL++   
Sbjct: 58  YLKADAGWFRSIVSGVVRDQVRLDPLIAVALQDDWALSRLDSTVRAILRAGVFELLDRKD 117

Query: 121 VPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRS 162
           VPV VI++EYV IA  FF  DEPK +NAVLD+++++   +  
Sbjct: 118 VPVAVIVTEYVEIARAFFDDDEPKLVNAVLDRIAKQVRGEAK 159


>gi|306843714|ref|ZP_07476314.1| transcription antitermination factor NusB [Brucella sp. BO1]
 gi|306276024|gb|EFM57733.1| transcription antitermination factor NusB [Brucella sp. BO1]
          Length = 171

 Score =  185 bits (471), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 68/158 (43%), Positives = 97/158 (61%), Gaps = 7/158 (4%)

Query: 1   MTIQDNKKD----LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELD 56
           M      +      + +++RG+ARLAAVQALYQ+D+ G    E+++EYE +R   + +  
Sbjct: 1   MNSTPEGRPTPNLPRTANKRGVARLAAVQALYQMDVAGTGVMEVVAEYEAFRLGKEVDG- 59

Query: 57  VESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELI 116
             + YL  D +WFR I+ GV++ +  +D +I   LTE W  SRLD  L +ILRAG  EL 
Sbjct: 60  --TQYLDADPQWFRAIVAGVVEDQLKLDPMIHQALTEDWPLSRLDSTLRAILRAGAWELK 117

Query: 117 ECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVS 154
               VP  VI+SEYV IA  F+  DEPK +NAVLD+++
Sbjct: 118 ARKDVPTAVIVSEYVDIAKAFYTEDEPKLVNAVLDRLA 155


>gi|241204015|ref|YP_002975111.1| transcription antitermination protein NusB [Rhizobium leguminosarum
           bv. trifolii WSM1325]
 gi|240857905|gb|ACS55572.1| NusB antitermination factor [Rhizobium leguminosarum bv. trifolii
           WSM1325]
          Length = 160

 Score =  185 bits (471), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 69/162 (42%), Positives = 105/162 (64%), Gaps = 3/162 (1%)

Query: 1   MTIQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESV 60
           M     ++ +K +++RG ARLAAVQALYQ+D+ G    EI++EYE +R   + +    + 
Sbjct: 1   MNDDKTERPVKTANQRGAARLAAVQALYQMDVGGTGVLEIVAEYEAHRLGQELDG---AT 57

Query: 61  YLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHS 120
           YL  D+ WFR I+ GV+  +  +D LI++ L + W+ SRLD  + +ILRAGV E+ +   
Sbjct: 58  YLKADVAWFRSIVSGVVRDQVRLDPLIAAALQDDWALSRLDSTVRAILRAGVFEITDRKD 117

Query: 121 VPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRS 162
           VPV VI++EYV IA  FF  DEPK +NAVLD+++++   +  
Sbjct: 118 VPVAVIVTEYVEIAQAFFDDDEPKLVNAVLDRIAKQVRGEAK 159


>gi|163868463|ref|YP_001609672.1| transcription antitermination protein NusB [Bartonella tribocorum
           CIP 105476]
 gi|189035879|sp|A9IVB9|NUSB_BART1 RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|161018119|emb|CAK01677.1| N utilization substance protein B [Bartonella tribocorum CIP
           105476]
          Length = 156

 Score =  184 bits (469), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 74/159 (46%), Positives = 102/159 (64%), Gaps = 3/159 (1%)

Query: 1   MTIQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESV 60
           M    ++   + +++RG ARLAAVQALYQ+DI+G    E  +EYE YR   D + D    
Sbjct: 1   MADIKSRHFPRSANKRGAARLAAVQALYQMDIVGSGVMETAAEYEAYRLGKDIDGDQ--- 57

Query: 61  YLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHS 120
           YL  D +WF  II GV+  ++ +D L+   L+ +WS SRLD IL +ILRA + ELI    
Sbjct: 58  YLDADFQWFLAIITGVVQDQKQLDPLLHQQLSAEWSLSRLDSILRAILRAALWELINRKD 117

Query: 121 VPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEI 159
           VPV V+++EYV IA  FF GDEPK +NAVLD +++K  +
Sbjct: 118 VPVAVVVNEYVDIAKAFFEGDEPKLVNAVLDSMAKKIRL 156


>gi|240850687|ref|YP_002972087.1| transcription antitermination protein NusB [Bartonella grahamii
           as4aup]
 gi|240267810|gb|ACS51398.1| transcription antitermination protein NusB [Bartonella grahamii
           as4aup]
          Length = 156

 Score =  184 bits (469), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 75/159 (47%), Positives = 103/159 (64%), Gaps = 3/159 (1%)

Query: 1   MTIQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESV 60
           M    ++   + +++RG ARLAAVQALYQ+DI+G    E  +EYE YR   D + D    
Sbjct: 1   MADIKSRHFPRSANKRGAARLAAVQALYQMDIVGSGVMETAAEYEAYRLGKDIDGDQ--- 57

Query: 61  YLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHS 120
           YL  D +WF  II GV+  ++ +D L+   L+ +WS SRLD IL +ILRAG+ ELI    
Sbjct: 58  YLEADFQWFLAIITGVVKDQKQLDPLLHQQLSAEWSLSRLDSILRAILRAGLWELINRKD 117

Query: 121 VPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEI 159
           VPV V+++EYV IA  FF GDEPK +NAVLD +++K  +
Sbjct: 118 VPVAVVMNEYVDIAKAFFEGDEPKLVNAVLDSMAKKVRL 156


>gi|118587988|ref|ZP_01545398.1| transcription antitermination protein NusB [Stappia aggregata IAM
           12614]
 gi|118439610|gb|EAV46241.1| transcription antitermination protein NusB [Stappia aggregata IAM
           12614]
          Length = 173

 Score =  184 bits (469), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 63/169 (37%), Positives = 101/169 (59%), Gaps = 9/169 (5%)

Query: 2   TIQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVY 61
             +   K ++ +++RG+ARLAAVQALYQ+D+ G   T ++SE+  +R   + + +    Y
Sbjct: 7   PEKPAGKTVRPANKRGVARLAAVQALYQMDVGGAPLTSVVSEFTAFRLGKEIDGEQ---Y 63

Query: 62  LHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSV 121
              D +WF+ I+ GV++ ++ +D  I + L E W   R+D +L +ILR+G  EL+    V
Sbjct: 64  READEQWFKQILAGVVEDQKFLDPYIHTALAEDWPLKRIDSLLRAILRSGSYELLRRKDV 123

Query: 122 PVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRK------EEIKRSGC 164
           P +VIISEY+ +A  FF  DEP  +N VLD+++ +      EE K  G 
Sbjct: 124 PAKVIISEYIDVAKAFFEDDEPGLVNGVLDRLAHELRGGELEEKKTDGA 172


>gi|23501657|ref|NP_697784.1| transcription antitermination protein NusB [Brucella suis 1330]
 gi|148560649|ref|YP_001258749.1| transcription antitermination protein NusB [Brucella ovis ATCC
           25840]
 gi|161618737|ref|YP_001592624.1| transcription antitermination protein NusB [Brucella canis ATCC
           23365]
 gi|225627268|ref|ZP_03785305.1| transcription antitermination factor NusB [Brucella ceti str. Cudo]
 gi|254701543|ref|ZP_05163371.1| transcription antitermination protein NusB [Brucella suis bv. 5
           str. 513]
 gi|254704092|ref|ZP_05165920.1| transcription antitermination protein NusB [Brucella suis bv. 3
           str. 686]
 gi|254707007|ref|ZP_05168835.1| transcription antitermination protein NusB [Brucella pinnipedialis
           M163/99/10]
 gi|254709884|ref|ZP_05171695.1| transcription antitermination protein NusB [Brucella pinnipedialis
           B2/94]
 gi|254713885|ref|ZP_05175696.1| transcription antitermination protein NusB [Brucella ceti
           M644/93/1]
 gi|254717058|ref|ZP_05178869.1| transcription antitermination protein NusB [Brucella ceti M13/05/1]
 gi|256031377|ref|ZP_05444991.1| transcription antitermination protein NusB [Brucella pinnipedialis
           M292/94/1]
 gi|256060886|ref|ZP_05451046.1| transcription antitermination protein NusB [Brucella neotomae 5K33]
 gi|256159498|ref|ZP_05457266.1| transcription antitermination protein NusB [Brucella ceti
           M490/95/1]
 gi|256254784|ref|ZP_05460320.1| transcription antitermination protein NusB [Brucella ceti B1/94]
 gi|256369202|ref|YP_003106710.1| transcription antitermination protein NusB [Brucella microti CCM
           4915]
 gi|260168510|ref|ZP_05755321.1| transcription antitermination protein NusB [Brucella sp. F5/99]
 gi|260566660|ref|ZP_05837130.1| antitermination protein NusB [Brucella suis bv. 4 str. 40]
 gi|261218868|ref|ZP_05933149.1| conserved hypothetical protein [Brucella ceti M13/05/1]
 gi|261221964|ref|ZP_05936245.1| conserved hypothetical protein [Brucella ceti B1/94]
 gi|261314474|ref|ZP_05953671.1| conserved hypothetical protein [Brucella pinnipedialis M163/99/10]
 gi|261317426|ref|ZP_05956623.1| conserved hypothetical protein [Brucella pinnipedialis B2/94]
 gi|261321633|ref|ZP_05960830.1| conserved hypothetical protein [Brucella ceti M644/93/1]
 gi|261324884|ref|ZP_05964081.1| conserved hypothetical protein [Brucella neotomae 5K33]
 gi|261752093|ref|ZP_05995802.1| transcription antitermination protein NusB [Brucella suis bv. 5
           str. 513]
 gi|261754752|ref|ZP_05998461.1| conserved hypothetical protein [Brucella suis bv. 3 str. 686]
 gi|261757980|ref|ZP_06001689.1| antitermination protein NusB [Brucella sp. F5/99]
 gi|265988463|ref|ZP_06101020.1| conserved hypothetical protein [Brucella pinnipedialis M292/94/1]
 gi|265997927|ref|ZP_06110484.1| conserved hypothetical protein [Brucella ceti M490/95/1]
 gi|294852131|ref|ZP_06792804.1| transcription antitermination factor NusB [Brucella sp. NVSL
           07-0026]
 gi|32171662|sp|Q8G1E7|NUSB_BRUSU RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|166215665|sp|A5VPV2|NUSB_BRUO2 RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|189035880|sp|A9MAF0|NUSB_BRUC2 RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|23347577|gb|AAN29699.1| N utilization substance protein B [Brucella suis 1330]
 gi|148371906|gb|ABQ61885.1| transcription antitermination factor NusB [Brucella ovis ATCC
           25840]
 gi|161335548|gb|ABX61853.1| transcription antitermination factor NusB [Brucella canis ATCC
           23365]
 gi|225617273|gb|EEH14318.1| transcription antitermination factor NusB [Brucella ceti str. Cudo]
 gi|255999362|gb|ACU47761.1| transcription antitermination protein NusB [Brucella microti CCM
           4915]
 gi|260156178|gb|EEW91258.1| antitermination protein NusB [Brucella suis bv. 4 str. 40]
 gi|260920548|gb|EEX87201.1| conserved hypothetical protein [Brucella ceti B1/94]
 gi|260923957|gb|EEX90525.1| conserved hypothetical protein [Brucella ceti M13/05/1]
 gi|261294323|gb|EEX97819.1| conserved hypothetical protein [Brucella ceti M644/93/1]
 gi|261296649|gb|EEY00146.1| conserved hypothetical protein [Brucella pinnipedialis B2/94]
 gi|261300864|gb|EEY04361.1| conserved hypothetical protein [Brucella neotomae 5K33]
 gi|261303500|gb|EEY06997.1| conserved hypothetical protein [Brucella pinnipedialis M163/99/10]
 gi|261737964|gb|EEY25960.1| antitermination protein NusB [Brucella sp. F5/99]
 gi|261741846|gb|EEY29772.1| transcription antitermination protein NusB [Brucella suis bv. 5
           str. 513]
 gi|261744505|gb|EEY32431.1| conserved hypothetical protein [Brucella suis bv. 3 str. 686]
 gi|262552395|gb|EEZ08385.1| conserved hypothetical protein [Brucella ceti M490/95/1]
 gi|264660660|gb|EEZ30921.1| conserved hypothetical protein [Brucella pinnipedialis M292/94/1]
 gi|294820720|gb|EFG37719.1| transcription antitermination factor NusB [Brucella sp. NVSL
           07-0026]
          Length = 171

 Score =  184 bits (469), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 67/151 (44%), Positives = 96/151 (63%), Gaps = 3/151 (1%)

Query: 4   QDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLH 63
           +      + +++RG+ARLAAVQALYQ+D+ G    E+++EYE +R   + +    + YL 
Sbjct: 8   RPTPNLPRTANKRGVARLAAVQALYQMDVAGTGVMEVVAEYEAFRLGKEVDG---TQYLD 64

Query: 64  VDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPV 123
            D +WFR I+ GV++ +  +D +I   LTE W  SRLD  L +ILRAG  EL     VP 
Sbjct: 65  ADPQWFRAIVAGVVEDQLKLDPMIHQALTEDWPLSRLDSTLRAILRAGAWELKARKDVPT 124

Query: 124 EVIISEYVCIAHDFFYGDEPKFINAVLDKVS 154
            VI+SEYV IA  F+  DEPK +NAVLD+++
Sbjct: 125 AVIVSEYVDIAKAFYTEDEPKLVNAVLDRLA 155


>gi|218682018|ref|ZP_03529619.1| transcription antitermination protein NusB [Rhizobium etli CIAT
           894]
          Length = 160

 Score =  184 bits (467), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 69/162 (42%), Positives = 104/162 (64%), Gaps = 3/162 (1%)

Query: 1   MTIQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESV 60
           M     ++ +K +++RG ARLAAVQALYQ+D+ G    EI++EYE +R   + +    + 
Sbjct: 1   MNDDKTERPVKTANQRGAARLAAVQALYQMDVGGTGVLEIVAEYEAHRLGQELDG---AT 57

Query: 61  YLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHS 120
           YL  D  WFR I+ GV+  +  +D LI++ L + W+ SRLD  + +ILRAGV E+ +   
Sbjct: 58  YLKADAAWFRSIVSGVVRDQVRLDPLIAAALQDDWALSRLDSTVRAILRAGVFEITDRKD 117

Query: 121 VPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRS 162
           VPV VI++EYV IA  FF  DEPK +NAVLD+++++   +  
Sbjct: 118 VPVAVIVTEYVEIAQAFFEDDEPKLVNAVLDRIAKQVRGEAK 159


>gi|153009852|ref|YP_001371067.1| transcription antitermination protein NusB [Ochrobactrum anthropi
           ATCC 49188]
 gi|166215706|sp|A6X1Y4|NUSB_OCHA4 RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|151561740|gb|ABS15238.1| NusB antitermination factor [Ochrobactrum anthropi ATCC 49188]
          Length = 168

 Score =  184 bits (467), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 68/151 (45%), Positives = 96/151 (63%), Gaps = 3/151 (1%)

Query: 4   QDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLH 63
           +      + +++RG+ARLAAVQALYQ+D+ G    E+++EYE +R   + +    + YL 
Sbjct: 8   RPTPNLPRTANKRGVARLAAVQALYQMDVAGTGVLEVVAEYEAFRLGKEVDG---TQYLD 64

Query: 64  VDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPV 123
            D +WFR I+ GV+D +  +D +I   LTE W  SRLD  L +ILRAG  EL     VP 
Sbjct: 65  ADPQWFRAIVAGVVDEQLKLDPMIHQALTEDWPLSRLDSTLRAILRAGAWELQTRKDVPT 124

Query: 124 EVIISEYVCIAHDFFYGDEPKFINAVLDKVS 154
            VI+SEYV IA  F+  DEPK +NAVLD+++
Sbjct: 125 AVIVSEYVDIAKAFYTEDEPKLVNAVLDRLA 155


>gi|319407319|emb|CBI80960.1| N utilization substance protein B [Bartonella sp. 1-1C]
          Length = 156

 Score =  184 bits (467), Expect = 5e-45,   Method: Composition-based stats.
 Identities = 71/156 (45%), Positives = 104/156 (66%), Gaps = 3/156 (1%)

Query: 1   MTIQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESV 60
           M     K  L+L+++RG ARLAAVQALYQ+D++G    E+I+EY+ YR   D +    S 
Sbjct: 1   MDDVKGKDFLRLANKRGAARLAAVQALYQMDMVGIGAMEVIAEYKAYRLGKDIDG---SQ 57

Query: 61  YLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHS 120
           YL  D +WF  II GV+  ++ +D ++   L+E+W+ SRLD  L +ILRAG+ ELI    
Sbjct: 58  YLDADFQWFCSIIVGVVRDQKQLDPMLHKQLSEEWALSRLDSTLRAILRAGLWELINRKD 117

Query: 121 VPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRK 156
           VP+ VI++EY+ IA  FF  DEP+ +NAVLD ++++
Sbjct: 118 VPIAVILNEYIDIAKAFFDNDEPRLVNAVLDSIAKE 153


>gi|49475530|ref|YP_033571.1| transcription antitermination protein NusB [Bartonella henselae
           str. Houston-1]
 gi|81647946|sp|Q6G3K8|NUSB_BARHE RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|49238336|emb|CAF27560.1| N utilization substance protein B [Bartonella henselae str.
           Houston-1]
          Length = 158

 Score =  183 bits (466), Expect = 6e-45,   Method: Composition-based stats.
 Identities = 75/159 (47%), Positives = 105/159 (66%), Gaps = 3/159 (1%)

Query: 1   MTIQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESV 60
           M   + K   +L+++RG ARLAAVQALYQ+DI+G    E  +EYE YR   D + D    
Sbjct: 1   MVDVEGKYSPRLANKRGAARLAAVQALYQMDIVGSGVMETAAEYEAYRLGKDIDGDQ--- 57

Query: 61  YLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHS 120
           YL  D +WF  II GV+  ++ +D +++  L+ +WS SRLD IL +ILRAG+ ELI    
Sbjct: 58  YLDADFQWFLAIITGVVKDQKQLDPMLNQQLSAEWSLSRLDSILRAILRAGLWELINRQD 117

Query: 121 VPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEI 159
           VP+ V++SEYV IA  FF GDEPK +NA+LD +++K  +
Sbjct: 118 VPIAVVMSEYVDIAKAFFEGDEPKLVNAILDSMAKKIRL 156


>gi|62289722|ref|YP_221515.1| transcription antitermination protein NusB [Brucella abortus bv. 1
           str. 9-941]
 gi|82699651|ref|YP_414225.1| transcription antitermination protein NusB [Brucella melitensis
           biovar Abortus 2308]
 gi|189023971|ref|YP_001934739.1| transcription antitermination protein NusB [Brucella abortus S19]
 gi|225852286|ref|YP_002732519.1| transcription antitermination protein NusB [Brucella melitensis
           ATCC 23457]
 gi|237815210|ref|ZP_04594208.1| transcription antitermination factor NusB [Brucella abortus str.
           2308 A]
 gi|254689031|ref|ZP_05152285.1| transcription antitermination protein NusB [Brucella abortus bv. 6
           str. 870]
 gi|254693514|ref|ZP_05155342.1| transcription antitermination protein NusB [Brucella abortus bv. 3
           str. Tulya]
 gi|254697166|ref|ZP_05158994.1| transcription antitermination protein NusB [Brucella abortus bv. 2
           str. 86/8/59]
 gi|254730062|ref|ZP_05188640.1| transcription antitermination protein NusB [Brucella abortus bv. 4
           str. 292]
 gi|256113300|ref|ZP_05454168.1| transcription antitermination protein NusB [Brucella melitensis bv.
           3 str. Ether]
 gi|256257281|ref|ZP_05462817.1| transcription antitermination protein NusB [Brucella abortus bv. 9
           str. C68]
 gi|256264209|ref|ZP_05466741.1| antitermination protein NusB [Brucella melitensis bv. 2 str. 63/9]
 gi|260545525|ref|ZP_05821266.1| antitermination protein NusB [Brucella abortus NCTC 8038]
 gi|260754526|ref|ZP_05866874.1| transcription antitermination protein NusB [Brucella abortus bv. 6
           str. 870]
 gi|260757747|ref|ZP_05870095.1| transcription antitermination protein NusB [Brucella abortus bv. 4
           str. 292]
 gi|260761572|ref|ZP_05873915.1| transcription antitermination protein NusB [Brucella abortus bv. 2
           str. 86/8/59]
 gi|260883554|ref|ZP_05895168.1| conserved hypothetical protein [Brucella abortus bv. 9 str. C68]
 gi|261213774|ref|ZP_05928055.1| transcription antitermination protein NusB [Brucella abortus bv. 3
           str. Tulya]
 gi|265994713|ref|ZP_06107270.1| conserved hypothetical protein [Brucella melitensis bv. 3 str.
           Ether]
 gi|297248127|ref|ZP_06931845.1| transcription antitermination factor NusB [Brucella abortus bv. 5
           str. B3196]
 gi|75496998|sp|Q57DY0|NUSB_BRUAB RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|119372280|sp|Q2YNC5|NUSB_BRUA2 RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|238689358|sp|B2S518|NUSB_BRUA1 RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|254772617|sp|C0RIA7|NUSB_BRUMB RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|62195854|gb|AAX74154.1| NusB, N utilization substance protein B [Brucella abortus bv. 1
           str. 9-941]
 gi|82615752|emb|CAJ10748.1| Antitermination protein NusB [Brucella melitensis biovar Abortus
           2308]
 gi|189019543|gb|ACD72265.1| Antitermination protein NusB [Brucella abortus S19]
 gi|225640651|gb|ACO00565.1| transcription antitermination factor NusB [Brucella melitensis ATCC
           23457]
 gi|237790047|gb|EEP64257.1| transcription antitermination factor NusB [Brucella abortus str.
           2308 A]
 gi|260096932|gb|EEW80807.1| antitermination protein NusB [Brucella abortus NCTC 8038]
 gi|260668065|gb|EEX55005.1| transcription antitermination protein NusB [Brucella abortus bv. 4
           str. 292]
 gi|260672004|gb|EEX58825.1| transcription antitermination protein NusB [Brucella abortus bv. 2
           str. 86/8/59]
 gi|260674634|gb|EEX61455.1| transcription antitermination protein NusB [Brucella abortus bv. 6
           str. 870]
 gi|260873082|gb|EEX80151.1| conserved hypothetical protein [Brucella abortus bv. 9 str. C68]
 gi|260915381|gb|EEX82242.1| transcription antitermination protein NusB [Brucella abortus bv. 3
           str. Tulya]
 gi|262765826|gb|EEZ11615.1| conserved hypothetical protein [Brucella melitensis bv. 3 str.
           Ether]
 gi|263094453|gb|EEZ18275.1| antitermination protein NusB [Brucella melitensis bv. 2 str. 63/9]
 gi|297175296|gb|EFH34643.1| transcription antitermination factor NusB [Brucella abortus bv. 5
           str. B3196]
 gi|326408790|gb|ADZ65855.1| Antitermination protein NusB [Brucella melitensis M28]
 gi|326538508|gb|ADZ86723.1| transcription antitermination factor NusB [Brucella melitensis
           M5-90]
          Length = 171

 Score =  183 bits (466), Expect = 6e-45,   Method: Composition-based stats.
 Identities = 66/151 (43%), Positives = 96/151 (63%), Gaps = 3/151 (1%)

Query: 4   QDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLH 63
           +      + +++RG+ARLAAVQAL+Q+D+ G    E+++EYE +R   + +    + YL 
Sbjct: 8   RPTPNLPRTANKRGVARLAAVQALFQMDVAGTGVMEVVAEYEAFRLGKEVDG---TQYLD 64

Query: 64  VDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPV 123
            D +WFR I+ GV++ +  +D +I   LTE W  SRLD  L +ILRAG  EL     VP 
Sbjct: 65  ADPQWFRAIVAGVVEDQLKLDPMIHQALTEDWPLSRLDSTLRAILRAGAWELKARKDVPT 124

Query: 124 EVIISEYVCIAHDFFYGDEPKFINAVLDKVS 154
            VI+SEYV IA  F+  DEPK +NAVLD+++
Sbjct: 125 AVIVSEYVDIAKAFYTEDEPKLVNAVLDRLA 155


>gi|13476941|ref|NP_108511.1| transcription antitermination protein NusB [Mesorhizobium loti
           MAFF303099]
 gi|22095963|sp|Q983A9|NUSB_RHILO RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|14027704|dbj|BAB54297.1| N-utilization substance protein B [Mesorhizobium loti MAFF303099]
          Length = 155

 Score =  183 bits (466), Expect = 7e-45,   Method: Composition-based stats.
 Identities = 73/158 (46%), Positives = 105/158 (66%), Gaps = 3/158 (1%)

Query: 10  LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF 69
           ++ +++RG ARLAAVQALYQ+D+ G    EI +EYE +R   + +    ++Y   D +WF
Sbjct: 1   MRHANKRGAARLAAVQALYQMDVAGSGVFEITAEYEAFRLGKEVDG---ALYREADAQWF 57

Query: 70  RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISE 129
           R I+ GV++ ++ ID +I   LT+ W  SRLD  L +ILRAGV EL++   VPV VI+SE
Sbjct: 58  RAILTGVVEDQKTIDPVIRQALTDDWPLSRLDSTLRAILRAGVYELMKREDVPVAVIVSE 117

Query: 130 YVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRSGCVSA 167
           YV IA  F+  DEPK +NAVLD+VSR+   +  G  ++
Sbjct: 118 YVDIAKAFYEEDEPKLVNAVLDRVSRRVRGEGRGKDAS 155


>gi|114704829|ref|ZP_01437737.1| transcription antitermination protein NusB [Fulvimarina pelagi
           HTCC2506]
 gi|114539614|gb|EAU42734.1| transcription antitermination protein NusB [Fulvimarina pelagi
           HTCC2506]
          Length = 163

 Score =  183 bits (465), Expect = 8e-45,   Method: Composition-based stats.
 Identities = 69/153 (45%), Positives = 100/153 (65%), Gaps = 3/153 (1%)

Query: 6   NKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVD 65
            ++  + +++RG+ARLAAVQALYQ+DI G    E ++EYET+R   + + +    Y   D
Sbjct: 5   KQRSFRPANKRGVARLAAVQALYQMDIGGTPLVETVAEYETHRMGHEIDGE---TYRVAD 61

Query: 66  LEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEV 125
             WFR I+ GV+ R++ ID +I + L   W  SRLD  L +ILRAGV E+   + VPV V
Sbjct: 62  AAWFRDIVSGVVRRQKAIDPIIHANLPPGWPLSRLDSTLRAILRAGVYEIETRNDVPVAV 121

Query: 126 IISEYVCIAHDFFYGDEPKFINAVLDKVSRKEE 158
           I+SEYV +A  FF  +EPK +NA+LD+V+R+  
Sbjct: 122 IVSEYVDVAKAFFEEEEPKLVNALLDRVAREMR 154


>gi|17987469|ref|NP_540103.1| transcription antitermination protein NusB [Brucella melitensis bv.
           1 str. 16M]
 gi|256044456|ref|ZP_05447360.1| transcription antitermination protein NusB [Brucella melitensis bv.
           1 str. Rev.1]
 gi|260563807|ref|ZP_05834293.1| antitermination protein NusB [Brucella melitensis bv. 1 str. 16M]
 gi|265990877|ref|ZP_06103434.1| conserved hypothetical protein [Brucella melitensis bv. 1 str.
           Rev.1]
 gi|22095950|sp|Q8YGH3|NUSB_BRUME RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|17983165|gb|AAL52367.1| n utilization substance protein b [Brucella melitensis bv. 1 str.
           16M]
 gi|260153823|gb|EEW88915.1| antitermination protein NusB [Brucella melitensis bv. 1 str. 16M]
 gi|263001661|gb|EEZ14236.1| conserved hypothetical protein [Brucella melitensis bv. 1 str.
           Rev.1]
          Length = 171

 Score =  183 bits (465), Expect = 8e-45,   Method: Composition-based stats.
 Identities = 66/144 (45%), Positives = 95/144 (65%), Gaps = 3/144 (2%)

Query: 11  KLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFR 70
           + +++RG+ARLAAVQAL+Q+D+ G    E+++EYE +R   + +    + YL  D +WFR
Sbjct: 15  RTANKRGVARLAAVQALFQMDVAGTGVMEVVAEYEAFRLGKEVDG---TQYLDADPQWFR 71

Query: 71  VIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEY 130
            I+ GV++ +  +D +I   LTE W  SRLD  L +ILRAG  EL     VP  VI+SEY
Sbjct: 72  AIVAGVVEDQLKLDPMIHQALTEDWPLSRLDSTLRAILRAGAWELKARKDVPTAVIVSEY 131

Query: 131 VCIAHDFFYGDEPKFINAVLDKVS 154
           V IA  F+  DEPK +NAVLD+++
Sbjct: 132 VDIAKAFYTEDEPKLVNAVLDRLA 155


>gi|319405757|emb|CBI79380.1| N utilization substance protein B [Bartonella sp. AR 15-3]
          Length = 156

 Score =  182 bits (463), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 73/156 (46%), Positives = 104/156 (66%), Gaps = 3/156 (1%)

Query: 1   MTIQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESV 60
           M     K  L L+++RG ARLAAVQALYQ+DI+G    E+I+EY+ YR   D +    S 
Sbjct: 1   MDDIKGKDSLILANKRGAARLAAVQALYQMDIVGIGVREVIAEYKAYRLGKDIDG---SQ 57

Query: 61  YLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHS 120
           YL  D +WFR I+ GV+  ++ +D ++   L+E+W+ SRLD  L +ILRAG+ ELI    
Sbjct: 58  YLDADFQWFRSIVVGVVKDQKQLDPMLHQQLSEEWALSRLDSTLRAILRAGLWELINRKD 117

Query: 121 VPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRK 156
           VPV VI++EYV IA  FF  +EP+ +NAVLD ++++
Sbjct: 118 VPVAVIMNEYVDIAKAFFESNEPRLVNAVLDSIAKE 153


>gi|91977147|ref|YP_569806.1| transcription antitermination protein NusB [Rhodopseudomonas
           palustris BisB5]
 gi|119390810|sp|Q136T4|NUSB_RHOPS RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|91683603|gb|ABE39905.1| NusB antitermination factor [Rhodopseudomonas palustris BisB5]
          Length = 174

 Score =  182 bits (463), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 60/152 (39%), Positives = 92/152 (60%), Gaps = 3/152 (1%)

Query: 5   DNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHV 64
           D K   + ++RRG ARLAAVQALYQ+DI G    +  +E+E++    + E D    YL  
Sbjct: 18  DKKPGDRKANRRGAARLAAVQALYQMDIGGAGIDDTFAEFESHWIGNEVEGDQ---YLPA 74

Query: 65  DLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVE 124
           +  +FR I+ GV+  +  +D LI   L + W  +R+D I+ +++RAG  EL     +P  
Sbjct: 75  EAAFFRDIVSGVVRDQTKLDPLIDEALAKGWPLARIDAIIRAVMRAGAYELEHRKDIPAR 134

Query: 125 VIISEYVCIAHDFFYGDEPKFINAVLDKVSRK 156
           V++SEYV +AH F   DE   +NAVLD+++R+
Sbjct: 135 VVVSEYVDVAHAFVEKDETGMVNAVLDQIARQ 166


>gi|328543540|ref|YP_004303649.1| transcription antitermination protein NusB [polymorphum gilvum
           SL003B-26A1]
 gi|326413284|gb|ADZ70347.1| transcription antitermination protein NusB [Polymorphum gilvum
           SL003B-26A1]
          Length = 171

 Score =  182 bits (463), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 60/173 (34%), Positives = 100/173 (57%), Gaps = 6/173 (3%)

Query: 1   MTIQ---DNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDV 57
           MT +   +  +D + +++RG ARL AVQALYQ+DI G S T++++E+  +R   + +   
Sbjct: 1   MTDKVAHEGGRDARPANKRGAARLGAVQALYQMDIGGASLTDVVNEFTAFRLGKELDG-- 58

Query: 58  ESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIE 117
            + Y   D  WF+ ++ GV++ ++ +D  I + L E W   R+D +L +ILRAG  EL+ 
Sbjct: 59  -AQYREADELWFKDVVKGVVEEQRKLDPFIHTALVEDWPLRRIDSLLRAILRAGAYELLR 117

Query: 118 CHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRSGCVSAITQ 170
              VP  VIISEY+ +A  F+  DEP+ +N VLD+++ +             +
Sbjct: 118 RRDVPARVIISEYIDVAKAFYAEDEPRLVNGVLDRLAHELRTGEFAAKDGTGE 170


>gi|319404314|emb|CBI77907.1| N utilization substance protein B [Bartonella rochalimae ATCC
           BAA-1498]
          Length = 156

 Score =  181 bits (461), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 70/156 (44%), Positives = 105/156 (67%), Gaps = 3/156 (1%)

Query: 1   MTIQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESV 60
           M     K  L+L+++RG ARLAAVQALYQ+D++G    E+I+EY+ YR   D +    + 
Sbjct: 1   MDDVKGKDSLRLANKRGAARLAAVQALYQMDMVGIGAMEVIAEYKAYRLGKDIDG---NQ 57

Query: 61  YLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHS 120
           YL  D +WFR II GV+  ++ +D ++   L+E+W+ SRLD  L +ILRAG+ ELI    
Sbjct: 58  YLDADFQWFRSIIVGVVRDQKQLDPMLHQQLSEEWALSRLDSTLRAILRAGLWELINRKG 117

Query: 121 VPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRK 156
           +P+ VI++EY+ IA  FF  DEP+ +NAVLD ++++
Sbjct: 118 MPIAVILNEYIDIAKAFFDNDEPRLVNAVLDSIAKE 153


>gi|49474164|ref|YP_032206.1| transcription antitermination protein NusB [Bartonella quintana
           str. Toulouse]
 gi|81647100|sp|Q6G004|NUSB_BARQU RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|49239668|emb|CAF26039.1| N utilization substance protein B [Bartonella quintana str.
           Toulouse]
          Length = 156

 Score =  181 bits (461), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 72/159 (45%), Positives = 102/159 (64%), Gaps = 3/159 (1%)

Query: 1   MTIQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESV 60
           M     K   +L+++RG ARLAAVQALYQ+DI+G    E  +EYE Y    + +    + 
Sbjct: 1   MADIKGKYSPRLANKRGAARLAAVQALYQMDIVGSGVMETAAEYEAYHLEKNIDG---NQ 57

Query: 61  YLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHS 120
           YL  D +WF  II GV+  ++ +D ++   L+ +WS SRLD IL +ILRAG+ ELI    
Sbjct: 58  YLDADFQWFLAIITGVVKDQKQLDPMLHQQLSAEWSLSRLDSILRAILRAGLWELINRQD 117

Query: 121 VPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEI 159
           VP+ V+++EYV IA  FF GDEPK +NAVLD +++K  +
Sbjct: 118 VPIAVVMNEYVDIAKAFFEGDEPKLVNAVLDSMAKKIRL 156


>gi|49080752|gb|AAT50054.1| PA4052 [synthetic construct]
          Length = 160

 Score =  181 bits (461), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 50/164 (30%), Positives = 76/164 (46%), Gaps = 18/164 (10%)

Query: 1   MTIQDN-----KKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTEL 55
           M+ QD+     K     +  R  AR  AVQALY   I G    EI +++ T         
Sbjct: 1   MSNQDSGNPAAKPPKGKTAARRKARSLAVQALYSWQIAGQPLHEIEAQFRT--------- 51

Query: 56  DVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLEL 115
             ++ +  VD  +F  I+HGV  +K  +D     CL      + +D +  +ILR    EL
Sbjct: 52  --DNDFSEVDGAYFHEILHGVPRQKSELDSTFEPCLDR--PLAEIDPVELAILRLSTYEL 107

Query: 116 IECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEI 159
                VP +V+I+E + +A  F   D  KF+N VLDK++ +   
Sbjct: 108 RNRIDVPYKVVINEGIELAKTFGATDGHKFVNGVLDKLAPRLRA 151


>gi|90424163|ref|YP_532533.1| transcription antitermination protein NusB [Rhodopseudomonas
           palustris BisB18]
 gi|119390809|sp|Q214H2|NUSB_RHOPB RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|90106177|gb|ABD88214.1| NusB antitermination factor [Rhodopseudomonas palustris BisB18]
          Length = 169

 Score =  181 bits (461), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 59/154 (38%), Positives = 94/154 (61%), Gaps = 3/154 (1%)

Query: 3   IQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYL 62
            +   K  K ++RRG ARLAAVQALYQ+D+ G    +I +E+E++    + E D    YL
Sbjct: 10  NKPAPKGEKKANRRGAARLAAVQALYQMDVGGAGLNDIFAEFESHWLGNEVEGDQ---YL 66

Query: 63  HVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVP 122
             +  +F+ ++ GV+  +  +D LI   L + W  +R+D IL +++RAG  EL     VP
Sbjct: 67  PAEQAFFQDVVSGVVRDQAKLDPLIDVALAKGWPLARIDAILRAVMRAGAYELEHRKDVP 126

Query: 123 VEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRK 156
             V++SEYV +A+ F  G+E   +NAVLD+++R+
Sbjct: 127 ARVVVSEYVDVANAFVEGEETGMVNAVLDQIARQ 160


>gi|152985013|ref|YP_001346435.1| transcription antitermination protein NusB [Pseudomonas aeruginosa
           PA7]
 gi|150960171|gb|ABR82196.1| transcription antitermination factor NusB [Pseudomonas aeruginosa
           PA7]
          Length = 159

 Score =  181 bits (460), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 50/164 (30%), Positives = 76/164 (46%), Gaps = 18/164 (10%)

Query: 1   MTIQDN-----KKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTEL 55
           M+ QD+     K     +  R  AR  AVQALY   I G    EI +++ T         
Sbjct: 1   MSNQDSGSPAAKPPKGKTAARRKARSLAVQALYSWQIAGQPLHEIEAQFRT--------- 51

Query: 56  DVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLEL 115
             ++ +  VD  +F  I+HGV  +K  +D     CL      + +D +  +ILR    EL
Sbjct: 52  --DNDFSEVDGAYFHEILHGVPRQKSELDSTFEPCLDR--PLAEIDPVELAILRLSTYEL 107

Query: 116 IECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEI 159
                VP +V+I+E + +A  F   D  KF+N VLDK++ +   
Sbjct: 108 RNRIDVPYKVVINEGIELAKTFGATDGHKFVNGVLDKLAPRLRA 151


>gi|209884998|ref|YP_002288855.1| transcription antitermination factor NusB [Oligotropha
           carboxidovorans OM5]
 gi|209873194|gb|ACI92990.1| transcription antitermination factor NusB [Oligotropha
           carboxidovorans OM5]
          Length = 156

 Score =  181 bits (460), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 61/150 (40%), Positives = 88/150 (58%), Gaps = 3/150 (2%)

Query: 12  LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71
            ++RRG ARLAAVQALYQ+DI G    +I +E+E++    + E D    YL  +  +FR 
Sbjct: 8   KANRRGAARLAAVQALYQMDIAGAGINDIFAEFESHWLGNEVEGDE---YLPAEAAFFRD 64

Query: 72  IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
           I+ GV+  +  ID ++   L+  W   R++ IL + LRAG  EL     VP  V+I EYV
Sbjct: 65  IVSGVVRDQGRIDPMLDEALSRGWPLKRIEAILRATLRAGAYELGHRKDVPARVVIKEYV 124

Query: 132 CIAHDFFYGDEPKFINAVLDKVSRKEEIKR 161
            +AH FF  DE   +NAVLD+++R+     
Sbjct: 125 DVAHAFFEADEAGMVNAVLDQIARQTRAGE 154


>gi|15599247|ref|NP_252741.1| transcription antitermination protein NusB [Pseudomonas aeruginosa
           PAO1]
 gi|107103566|ref|ZP_01367484.1| hypothetical protein PaerPA_01004636 [Pseudomonas aeruginosa PACS2]
 gi|116052089|ref|YP_789067.1| transcription antitermination protein NusB [Pseudomonas aeruginosa
           UCBPP-PA14]
 gi|218889667|ref|YP_002438531.1| transcription antitermination protein NusB [Pseudomonas aeruginosa
           LESB58]
 gi|254242734|ref|ZP_04936056.1| NusB protein [Pseudomonas aeruginosa 2192]
 gi|296387391|ref|ZP_06876890.1| transcription antitermination protein NusB [Pseudomonas aeruginosa
           PAb1]
 gi|313109495|ref|ZP_07795451.1| NusB protein [Pseudomonas aeruginosa 39016]
 gi|22095967|sp|Q9HWX6|NUSB_PSEAE RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|9950248|gb|AAG07439.1|AE004821_12 NusB protein [Pseudomonas aeruginosa PAO1]
 gi|115587310|gb|ABJ13325.1| NusB [Pseudomonas aeruginosa UCBPP-PA14]
 gi|126196112|gb|EAZ60175.1| NusB protein [Pseudomonas aeruginosa 2192]
 gi|218769890|emb|CAW25651.1| NusB protein [Pseudomonas aeruginosa LESB58]
 gi|310881953|gb|EFQ40547.1| NusB protein [Pseudomonas aeruginosa 39016]
          Length = 159

 Score =  181 bits (459), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 50/164 (30%), Positives = 76/164 (46%), Gaps = 18/164 (10%)

Query: 1   MTIQDN-----KKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTEL 55
           M+ QD+     K     +  R  AR  AVQALY   I G    EI +++ T         
Sbjct: 1   MSNQDSGNPAAKPPKGKTAARRKARSLAVQALYSWQIAGQPLHEIEAQFRT--------- 51

Query: 56  DVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLEL 115
             ++ +  VD  +F  I+HGV  +K  +D     CL      + +D +  +ILR    EL
Sbjct: 52  --DNDFSEVDGAYFHEILHGVPRQKSELDSTFEPCLDR--PLAEIDPVELAILRLSTYEL 107

Query: 116 IECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEI 159
                VP +V+I+E + +A  F   D  KF+N VLDK++ +   
Sbjct: 108 RNRIDVPYKVVINEGIELAKTFGATDGHKFVNGVLDKLAPRLRA 151


>gi|163843041|ref|YP_001627445.1| transcription antitermination protein NusB [Brucella suis ATCC
           23445]
 gi|189035881|sp|B0CL95|NUSB_BRUSI RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|163673764|gb|ABY37875.1| transcription antitermination factor NusB [Brucella suis ATCC
           23445]
          Length = 171

 Score =  181 bits (459), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 66/151 (43%), Positives = 95/151 (62%), Gaps = 3/151 (1%)

Query: 4   QDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLH 63
           +      + +++RG+ARLAA QALYQ+D+ G    E+++EYE +R   + +    + YL 
Sbjct: 8   RPTPNLPRTANKRGVARLAAAQALYQMDVAGTGVMEVVAEYEAFRLGKEVDG---TQYLD 64

Query: 64  VDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPV 123
            D +WFR I+ GV++ +  +D +I   LTE W  SRLD  L +ILRAG  EL     VP 
Sbjct: 65  ADPQWFRAIVAGVVEDQLKLDPMIHQALTEDWPLSRLDSTLRAILRAGAWELKARKDVPT 124

Query: 124 EVIISEYVCIAHDFFYGDEPKFINAVLDKVS 154
            VI+SEYV IA  F+  DEPK +NAVLD+++
Sbjct: 125 AVIVSEYVDIAKAFYTEDEPKLVNAVLDRLA 155


>gi|27380139|ref|NP_771668.1| transcription antitermination protein NusB [Bradyrhizobium
           japonicum USDA 110]
 gi|32171616|sp|Q89K81|NUSB_BRAJA RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|27353293|dbj|BAC50293.1| N-utilization substance protein B [Bradyrhizobium japonicum USDA
           110]
          Length = 165

 Score =  181 bits (459), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 62/167 (37%), Positives = 95/167 (56%), Gaps = 6/167 (3%)

Query: 1   MTIQDNKKD---LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDV 57
           M   + K      K ++RRG ARLAAVQALYQ+DI G    +I +E+E++    + E D 
Sbjct: 1   MADNNKKPAGLTEKKANRRGAARLAAVQALYQMDIAGAGINDIFAEFESHWLGNEVEGD- 59

Query: 58  ESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIE 117
              YL  +  +FR ++ GV+  ++ +D LI   L++ W   R++ IL ++LRAG  EL  
Sbjct: 60  --TYLPAEAAFFRDVVSGVVRDQKKLDPLIDEALSKGWPLKRIEAILRAVLRAGAYELQH 117

Query: 118 CHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRSGC 164
              VP  V++SEYV +A+ F   +E   +NAVLD++ R+      G 
Sbjct: 118 RKDVPGRVVVSEYVDVANAFVDREETGMVNAVLDQIGRQFRGDEFGR 164


>gi|254502610|ref|ZP_05114761.1| transcription antitermination factor NusB [Labrenzia alexandrii
           DFL-11]
 gi|222438681|gb|EEE45360.1| transcription antitermination factor NusB [Labrenzia alexandrii
           DFL-11]
          Length = 177

 Score =  181 bits (459), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 62/158 (39%), Positives = 95/158 (60%), Gaps = 3/158 (1%)

Query: 4   QDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLH 63
           Q +    + +++RG+ARLAAVQALYQ+DI G   T ++SEY  +R   + + +    Y  
Sbjct: 13  QKSDNSSRPANKRGVARLAAVQALYQMDIGGAPLTNVVSEYTAFRLGKEIDGEQ---YRD 69

Query: 64  VDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPV 123
            D +WF+ I+ GV+  ++ +D  I + L E W   R+D +L +ILRAG  EL+    VP 
Sbjct: 70  ADEQWFKHILAGVVADQKFLDPYIHTALKEDWPLKRIDSLLRAILRAGGYELLRRRDVPA 129

Query: 124 EVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKR 161
           +VIISEY+ +A  FF  DEP  +N VLD+++ +     
Sbjct: 130 KVIISEYIDVAKAFFEDDEPGLVNGVLDRLAHELRSPE 167


>gi|121602835|ref|YP_988938.1| transcription antitermination protein NusB [Bartonella
           bacilliformis KC583]
 gi|120615012|gb|ABM45613.1| transcription antitermination factor NusB [Bartonella bacilliformis
           KC583]
          Length = 154

 Score =  181 bits (459), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 73/146 (50%), Positives = 95/146 (65%), Gaps = 3/146 (2%)

Query: 14  HRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVII 73
           ++RG ARLAAVQALYQ+DI+G    E  +EYE YR   + + D    YL  D +WFR II
Sbjct: 12  NKRGAARLAAVQALYQMDIVGTGVMETAAEYEAYRLGKEIDGDQ---YLDADFQWFRAII 68

Query: 74  HGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCI 133
            GV+  ++ +D ++   L+E+WS SRLD IL +ILRAG+ ELI    VPV VII+EYV I
Sbjct: 69  AGVVRDQKKLDPMLHQQLSEEWSLSRLDSILRAILRAGLWELINRKEVPVAVIINEYVDI 128

Query: 134 AHDFFYGDEPKFINAVLDKVSRKEEI 159
           A  FF   EPK +NAVLD  ++    
Sbjct: 129 AKAFFEDGEPKLVNAVLDNTAKNSRA 154


>gi|254236941|ref|ZP_04930264.1| NusB protein [Pseudomonas aeruginosa C3719]
 gi|126168872|gb|EAZ54383.1| NusB protein [Pseudomonas aeruginosa C3719]
          Length = 159

 Score =  180 bits (457), Expect = 7e-44,   Method: Composition-based stats.
 Identities = 49/164 (29%), Positives = 75/164 (45%), Gaps = 18/164 (10%)

Query: 1   MTIQDN-----KKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTEL 55
           M+ QD+     K     +  R  AR  AVQALY   I G    EI +++           
Sbjct: 1   MSNQDSGNPAAKPPKGKTAARRKARSLAVQALYSWQIAGQPLHEIEAQFRA--------- 51

Query: 56  DVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLEL 115
             ++ +  VD  +F  I+HGV  +K  +D     CL      + +D +  +ILR    EL
Sbjct: 52  --DNDFSEVDGAYFHEILHGVPRQKSELDSTFEPCLDR--PLAEIDPVELAILRLSTYEL 107

Query: 116 IECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEI 159
                VP +V+I+E + +A  F   D  KF+N VLDK++ +   
Sbjct: 108 RNRIDVPYKVVINEGIELAKTFGATDGHKFVNGVLDKLAPRLRA 151


>gi|312113512|ref|YP_004011108.1| NusB antitermination factor [Rhodomicrobium vannielii ATCC 17100]
 gi|311218641|gb|ADP70009.1| NusB antitermination factor [Rhodomicrobium vannielii ATCC 17100]
          Length = 185

 Score =  180 bits (457), Expect = 7e-44,   Method: Composition-based stats.
 Identities = 64/161 (39%), Positives = 92/161 (57%), Gaps = 6/161 (3%)

Query: 7   KKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDL 66
           K DL     R  ARLAAVQALYQ+++     + ++ E+   RF      +   +Y   D 
Sbjct: 12  KADLPAGQPRTRARLAAVQALYQMEMTQRDLSLVLQEFLGRRF------ETVEIYAGADR 65

Query: 67  EWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVI 126
            +FR I+ G+   +  IDL I++ L   W  SR+D IL +ILR+GV EL + + VP   +
Sbjct: 66  SFFRDIVEGIARGQAKIDLEIAAHLASGWKLSRIDSILRAILRSGVYELTDRNDVPARAV 125

Query: 127 ISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRSGCVSA 167
           I+EYV IA DFF G+EP  +N VLD+V+R +  +  G  S 
Sbjct: 126 INEYVEIAKDFFGGEEPGVVNGVLDRVARAKRSREFGRKSG 166


>gi|302189354|ref|ZP_07266027.1| transcription antitermination protein NusB [Pseudomonas syringae
           pv. syringae 642]
          Length = 165

 Score =  180 bits (457), Expect = 7e-44,   Method: Composition-based stats.
 Identities = 56/169 (33%), Positives = 86/169 (50%), Gaps = 23/169 (13%)

Query: 2   TIQDNKKDLK-------LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTE 54
           T Q N +D K        S +R  AR  A QALYQ  + G S  EI +++          
Sbjct: 6   TDQFNPRDAKSPEAAKGKSAKRREARQMATQALYQWHMAGHSLNEIEAQFR--------- 56

Query: 55  LDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLE 114
             V++ + +VD  +FR ++HGV   K  ID  +S CL    +   LD +  ++LR    E
Sbjct: 57  --VDNDFSNVDGTYFRELLHGVATNKTEIDTALSPCLD--LTIEELDPVELAVLRLSTFE 112

Query: 115 LIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVS---RKEEIK 160
           L++   VP  V+I+E + +A  +   D  KF+N VLDK++   R+ E+K
Sbjct: 113 LLKRIDVPYRVVINEGIELAKVYGSTDGHKFVNGVLDKLAPRLREVEVK 161


>gi|319408451|emb|CBI82106.1| N utilization substance protein B [Bartonella schoenbuchensis R1]
          Length = 156

 Score =  180 bits (457), Expect = 8e-44,   Method: Composition-based stats.
 Identities = 72/159 (45%), Positives = 108/159 (67%), Gaps = 3/159 (1%)

Query: 1   MTIQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESV 60
           M    +K    L+++RG+ARLAAVQALYQ+DI+G    EI +EY+ YR   D + D    
Sbjct: 1   MVDIKSKHSSHLANKRGVARLAAVQALYQMDIVGIGVREIAAEYKAYRLGKDIDGDQ--- 57

Query: 61  YLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHS 120
           YL  D +WFR +I GV+  ++ +D ++   L+E+WS SRLD IL +ILRAG+ EL+   +
Sbjct: 58  YLDADFQWFRAVIAGVVQNQKQLDPMLQQKLSEEWSLSRLDSILRAILRAGLWELMNHKN 117

Query: 121 VPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEI 159
           +P  VI+SEYV +A  FF GDEP+ +NA+LD+++++  +
Sbjct: 118 IPTAVIVSEYVDVAKAFFEGDEPRLVNAILDRIAKEIRL 156


>gi|330899661|gb|EGH31080.1| transcription antitermination protein NusB [Pseudomonas syringae
           pv. japonica str. M301072PT]
 gi|330943563|gb|EGH45900.1| transcription antitermination protein NusB [Pseudomonas syringae
           pv. pisi str. 1704B]
 gi|330976725|gb|EGH76766.1| transcription antitermination protein NusB [Pseudomonas syringae
           pv. aptata str. DSM 50252]
          Length = 165

 Score =  179 bits (456), Expect = 9e-44,   Method: Composition-based stats.
 Identities = 55/169 (32%), Positives = 85/169 (50%), Gaps = 23/169 (13%)

Query: 2   TIQDNKKDLK-------LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTE 54
           T Q N +D K        S +R  AR  A QALYQ  + G S  EI +++          
Sbjct: 6   TDQFNPRDAKSPEAAKGKSAKRREARQMATQALYQWHMAGHSLNEIEAQFR--------- 56

Query: 55  LDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLE 114
             V++ + +VD  +F  ++HGV   K  ID  +S CL    +   LD +  ++LR    E
Sbjct: 57  --VDNDFSNVDGTYFHELLHGVATNKTEIDTALSPCLD--LTIEELDPVELAVLRLSTFE 112

Query: 115 LIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVS---RKEEIK 160
           L++   VP  V+I+E + +A  +   D  KF+N VLDK++   R+ E+K
Sbjct: 113 LLKRIDVPYRVVINEGIELAKVYGSTDGHKFVNGVLDKLAPRLREVEVK 161


>gi|115524819|ref|YP_781730.1| transcription antitermination protein NusB [Rhodopseudomonas
           palustris BisA53]
 gi|115518766|gb|ABJ06750.1| NusB antitermination factor [Rhodopseudomonas palustris BisA53]
          Length = 174

 Score =  179 bits (455), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 57/150 (38%), Positives = 93/150 (62%), Gaps = 3/150 (2%)

Query: 7   KKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDL 66
            K  + ++RRG ARLAAVQALYQ+++ G    +I +E+E++    + E +    YL  + 
Sbjct: 19  PKGDRKANRRGAARLAAVQALYQMEVGGAGLNDIFAEFESHWLGHEVEGEQ---YLPAEA 75

Query: 67  EWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVI 126
            +F+ I+ GV+  +  +D LI   L+  W  +R++ IL +++RAG  EL     VP  V+
Sbjct: 76  AFFQDIVSGVVRDQLQLDPLIDEALSRGWPLARIEAILRAVMRAGAYELQHRKDVPARVV 135

Query: 127 ISEYVCIAHDFFYGDEPKFINAVLDKVSRK 156
           +SEYV +A+ F  GDE   +NAVLD+++R+
Sbjct: 136 VSEYVDVANAFVEGDETGMVNAVLDQIARQ 165


>gi|86749756|ref|YP_486252.1| transcription antitermination protein NusB [Rhodopseudomonas
           palustris HaA2]
 gi|119390808|sp|Q2IWR9|NUSB_RHOP2 RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|86572784|gb|ABD07341.1| NusB antitermination factor [Rhodopseudomonas palustris HaA2]
          Length = 169

 Score =  179 bits (454), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 60/153 (39%), Positives = 93/153 (60%), Gaps = 3/153 (1%)

Query: 4   QDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLH 63
           +   K  + ++RRG ARLAAVQALYQ+DI G    E  +E+E++    + E D    YL 
Sbjct: 11  KPVPKGDRKANRRGAARLAAVQALYQMDIGGAGINETFAEFESHWIGNEVEGDQ---YLP 67

Query: 64  VDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPV 123
            +  +FR ++ GV+  ++ +D LI   L + W  +R+D IL +++RAG  EL     +P 
Sbjct: 68  AEAAFFRDVVSGVVRDQKKLDPLIDDALAKGWPLARIDAILRAVMRAGAYELEHRKDIPA 127

Query: 124 EVIISEYVCIAHDFFYGDEPKFINAVLDKVSRK 156
            V++SEYV +AH F   DE   +NAVLD+++R+
Sbjct: 128 RVVVSEYVDVAHAFVEKDETGMVNAVLDQIARQ 160


>gi|71737269|ref|YP_276619.1| transcription antitermination protein NusB [Pseudomonas syringae
           pv. phaseolicola 1448A]
 gi|257483271|ref|ZP_05637312.1| transcription antitermination protein NusB [Pseudomonas syringae
           pv. tabaci ATCC 11528]
 gi|289629163|ref|ZP_06462117.1| transcription antitermination protein NusB [Pseudomonas syringae
           pv. aesculi str. NCPPB3681]
 gi|289647768|ref|ZP_06479111.1| transcription antitermination protein NusB [Pseudomonas syringae
           pv. aesculi str. 2250]
 gi|298488893|ref|ZP_07006917.1| Transcription termination protein NusB [Pseudomonas savastanoi pv.
           savastanoi NCPPB 3335]
 gi|119390796|sp|Q48DC2|NUSB_PSE14 RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|71557822|gb|AAZ37033.1| N utilization substance protein B [Pseudomonas syringae pv.
           phaseolicola 1448A]
 gi|298156568|gb|EFH97664.1| Transcription termination protein NusB [Pseudomonas savastanoi pv.
           savastanoi NCPPB 3335]
 gi|320330417|gb|EFW86396.1| transcription antitermination protein NusB [Pseudomonas syringae
           pv. glycinea str. race 4]
 gi|330869912|gb|EGH04621.1| transcription antitermination protein NusB [Pseudomonas syringae
           pv. aesculi str. 0893_23]
 gi|330874033|gb|EGH08182.1| transcription antitermination protein NusB [Pseudomonas syringae
           pv. glycinea str. race 4]
 gi|330888050|gb|EGH20711.1| transcription antitermination protein NusB [Pseudomonas syringae
           pv. mori str. 301020]
 gi|330988217|gb|EGH86320.1| transcription antitermination protein NusB [Pseudomonas syringae
           pv. lachrymans str. M301315]
 gi|331012494|gb|EGH92550.1| transcription antitermination protein NusB [Pseudomonas syringae
           pv. tabaci ATCC 11528]
          Length = 165

 Score =  178 bits (452), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 55/169 (32%), Positives = 86/169 (50%), Gaps = 23/169 (13%)

Query: 2   TIQDNKKDLK-------LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTE 54
           T Q N +D K        S +R  AR  A QALYQ  + G +  EI +++          
Sbjct: 6   TDQFNPRDAKSPEAAKGKSAKRREARQMATQALYQWHMAGHALNEIEAQFR--------- 56

Query: 55  LDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLE 114
             V++ + +VD  +FR ++HGV   K  ID  +S CL    +   LD +  ++LR    E
Sbjct: 57  --VDNDFSNVDGAYFRELLHGVATNKTEIDTALSPCLD--LTIEELDPVELAVLRLSTFE 112

Query: 115 LIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVS---RKEEIK 160
           L++   VP  V+I+E + +A  +   D  KF+N VLDK++   R+ E+K
Sbjct: 113 LLKRIDVPYRVVINEGIELAKVYGSTDGHKFVNGVLDKLAPRLREVEVK 161


>gi|299135081|ref|ZP_07028272.1| NusB antitermination factor [Afipia sp. 1NLS2]
 gi|298590058|gb|EFI50262.1| NusB antitermination factor [Afipia sp. 1NLS2]
          Length = 166

 Score =  178 bits (452), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 60/145 (41%), Positives = 87/145 (60%), Gaps = 3/145 (2%)

Query: 12  LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71
            ++RRG ARLAAVQALYQ+DI G    +I +E+E++    + E D    YL  +  +FR 
Sbjct: 16  KANRRGAARLAAVQALYQMDIAGAGINDIFAEFESHWLGNEVEGDE---YLPAEAAFFRD 72

Query: 72  IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
           ++ GV+  +  ID ++   LT  W   R++ IL + LRAG  EL     VP  V+I EYV
Sbjct: 73  VVSGVVRDQGKIDPMLDEALTRGWPLKRIEAILRATLRAGAYELGHRKDVPARVVIKEYV 132

Query: 132 CIAHDFFYGDEPKFINAVLDKVSRK 156
            +AH F   DE   +NAVLD+++R+
Sbjct: 133 DVAHAFVEADEAGMVNAVLDQIARQ 157


>gi|237797516|ref|ZP_04585977.1| transcription antitermination protein NusB [Pseudomonas syringae
           pv. oryzae str. 1_6]
 gi|331020366|gb|EGI00423.1| transcription antitermination protein NusB [Pseudomonas syringae
           pv. oryzae str. 1_6]
          Length = 165

 Score =  178 bits (452), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 54/169 (31%), Positives = 85/169 (50%), Gaps = 23/169 (13%)

Query: 2   TIQDNKKDLK-------LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTE 54
           T Q N +D K        S +R  AR  A QALYQ  + G +  EI +++          
Sbjct: 6   TDQFNPRDAKSPEAAKGKSAKRREARQMATQALYQWHMAGHALNEIEAQFR--------- 56

Query: 55  LDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLE 114
             V++ + +VD  +F  ++HGV   K  ID  +S CL    +   LD +  ++LR    E
Sbjct: 57  --VDNDFSNVDGTYFHELLHGVATNKTEIDTALSPCLD--LTIEELDPVELAVLRLSTFE 112

Query: 115 LIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVS---RKEEIK 160
           L++   VP  V+I+E + +A  +   D  KF+N VLDK++   R+ E+K
Sbjct: 113 LLKRIDVPYRVVINEGIELAKVYGSTDGHKFVNGVLDKLAPRLREVEVK 161


>gi|316934108|ref|YP_004109090.1| NusB antitermination factor [Rhodopseudomonas palustris DX-1]
 gi|315601822|gb|ADU44357.1| NusB antitermination factor [Rhodopseudomonas palustris DX-1]
          Length = 173

 Score =  177 bits (451), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 63/156 (40%), Positives = 95/156 (60%), Gaps = 7/156 (4%)

Query: 1   MTIQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESV 60
           MT +  +K    ++RRG ARLAAVQALYQ+DI G    E  +E+E++    + E +    
Sbjct: 17  MTPKGERK----ANRRGAARLAAVQALYQMDIGGAGINETFAEFESFWIGNEVEGEQ--- 69

Query: 61  YLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHS 120
           YL  +  +FR I+ GV+  ++ ID LI   L + W  +R+D IL +++RAG  EL     
Sbjct: 70  YLPAEAAFFRDIVSGVVREQKQIDPLIDDLLAKGWPLARIDAILRAVMRAGAYELEHRKD 129

Query: 121 VPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRK 156
           +P  V++SEYV +AH F   DE   +NAVLD+++R+
Sbjct: 130 IPARVVVSEYVDVAHAFVEKDETGMVNAVLDQIARQ 165


>gi|192291385|ref|YP_001991990.1| transcription antitermination protein NusB [Rhodopseudomonas
           palustris TIE-1]
 gi|238692600|sp|B3QJK9|NUSB_RHOPT RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|192285134|gb|ACF01515.1| NusB antitermination factor [Rhodopseudomonas palustris TIE-1]
          Length = 174

 Score =  177 bits (451), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 63/161 (39%), Positives = 95/161 (59%), Gaps = 7/161 (4%)

Query: 1   MTIQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESV 60
           MT +  +K    ++RRG ARLAAVQALYQ+DI G    E  +E+E++    + E +    
Sbjct: 17  MTPKGERK----ANRRGAARLAAVQALYQMDIGGAGINETFAEFESFWIGNEVEGEQ--- 69

Query: 61  YLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHS 120
           YL  +  +FR I+ GV+  ++ ID LI   L   W  +R+D IL +++RAG  EL     
Sbjct: 70  YLPAEAAFFRDIVAGVVREQKQIDPLIDDLLARGWPLARIDAILRAVMRAGAYELEHRKD 129

Query: 121 VPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKR 161
           +P  V++SEYV +AH F   DE   +NAVLD+++R+   + 
Sbjct: 130 IPARVVVSEYVDVAHAFVEKDETGMVNAVLDQIARRFRAEE 170


>gi|170750376|ref|YP_001756636.1| NusB antitermination factor [Methylobacterium radiotolerans JCM
           2831]
 gi|170656898|gb|ACB25953.1| NusB antitermination factor [Methylobacterium radiotolerans JCM
           2831]
          Length = 197

 Score =  177 bits (450), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 53/155 (34%), Positives = 86/155 (55%), Gaps = 3/155 (1%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           R  ARLA VQALY++DI G    + ++E+E +    + +      +   +  +FR ++ G
Sbjct: 25  RSGARLAVVQALYEMDISGKGVLDALAEFEAFWIGQEVDG---IAHPPAETAFFRDLLRG 81

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
            ++ ++ ID  +   L + W   R++++L +ILRAG  EL+    VP    ISEYV +AH
Sbjct: 82  TVEEQRAIDPKLDQALAQGWPLRRIEIVLRAILRAGAYELMFRRDVPAAAAISEYVDVAH 141

Query: 136 DFFYGDEPKFINAVLDKVSRKEEIKRSGCVSAITQ 170
            F+  DEP  +NAVLD+V+R+      G   A  +
Sbjct: 142 SFYTADEPGLVNAVLDRVAREVRPGEVGAPKASGK 176


>gi|39935796|ref|NP_948072.1| transcription antitermination protein NusB [Rhodopseudomonas
           palustris CGA009]
 gi|81562525|sp|Q6N688|NUSB_RHOPA RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|39649649|emb|CAE28171.1| antitermination factor, NusB [Rhodopseudomonas palustris CGA009]
          Length = 174

 Score =  176 bits (448), Expect = 7e-43,   Method: Composition-based stats.
 Identities = 63/156 (40%), Positives = 94/156 (60%), Gaps = 7/156 (4%)

Query: 1   MTIQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESV 60
           MT +  +K    ++RRG ARLAAVQALYQ+DI G    E  +E+E++    + E +    
Sbjct: 17  MTPKGERK----ANRRGAARLAAVQALYQMDIGGAGINETFAEFESFWIGNEVEGEQ--- 69

Query: 61  YLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHS 120
           YL  +  +FR I+ GV+  ++ ID LI   L   W  +R+D IL +++RAG  EL     
Sbjct: 70  YLPAEAAFFRDIVAGVVREQKQIDPLIDDLLARGWPLARIDAILRAVMRAGAYELEHRKD 129

Query: 121 VPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRK 156
           +P  V++SEYV +AH F   DE   +NAVLD+++R+
Sbjct: 130 IPARVVVSEYVDVAHAFVEKDETGMVNAVLDQIARR 165


>gi|92117364|ref|YP_577093.1| transcription antitermination protein NusB [Nitrobacter
           hamburgensis X14]
 gi|119390788|sp|Q1QMB4|NUSB_NITHX RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|91800258|gb|ABE62633.1| NusB antitermination factor [Nitrobacter hamburgensis X14]
          Length = 160

 Score =  176 bits (448), Expect = 7e-43,   Method: Composition-based stats.
 Identities = 59/151 (39%), Positives = 91/151 (60%), Gaps = 3/151 (1%)

Query: 11  KLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFR 70
           K ++RRG ARLAAVQALYQ++I G    ++ +E+E++   ++ E D    YL  +  +FR
Sbjct: 10  KKANRRGAARLAAVQALYQMEIGGAGINDVFAEFESHWLGSEVEGD---KYLPAEAAFFR 66

Query: 71  VIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEY 130
            ++ GV+  +  +D LI   L+  W   R+D IL ++LRAG  EL     VP  V++SEY
Sbjct: 67  DVVAGVVRDQARLDPLIDDALSRGWPLKRIDAILRAVLRAGSYELEHRKDVPARVVVSEY 126

Query: 131 VCIAHDFFYGDEPKFINAVLDKVSRKEEIKR 161
           V +AH F   +E   +NAVLD+++R+     
Sbjct: 127 VDVAHAFIEKEEVGMVNAVLDQIARRFRAGE 157


>gi|237809261|ref|YP_002893701.1| NusB antitermination factor [Tolumonas auensis DSM 9187]
 gi|259514913|sp|C4LAE0|NUSB_TOLAT RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|237501522|gb|ACQ94115.1| NusB antitermination factor [Tolumonas auensis DSM 9187]
          Length = 138

 Score =  176 bits (448), Expect = 8e-43,   Method: Composition-based stats.
 Identities = 46/152 (30%), Positives = 79/152 (51%), Gaps = 14/152 (9%)

Query: 10  LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF 69
           +K + RR  AR  A+QA+YQ  +   +  +I+ +++           +E     VDL +F
Sbjct: 1   MKPAERR-KARHLALQAIYQWQLAKDNVADIVEQFK-----------LEQPTKGVDLPYF 48

Query: 70  RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISE 129
            +++ GV++   ++D   S  L+ K     LD I   +LR    EL  C  VP +V+I+E
Sbjct: 49  ELLLTGVVNNVTNLDATFSPFLSRK--LDDLDQIDKGVLRLACYELTYCKDVPYKVVINE 106

Query: 130 YVCIAHDFFYGDEPKFINAVLDKVSRKEEIKR 161
            + +A  F   D  KF+N VLDKV ++  +++
Sbjct: 107 AIELAKAFATDDSHKFVNGVLDKVVKQMGLRQ 138


>gi|320322797|gb|EFW78890.1| transcription antitermination protein NusB [Pseudomonas syringae
           pv. glycinea str. B076]
          Length = 165

 Score =  176 bits (447), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 55/169 (32%), Positives = 87/169 (51%), Gaps = 23/169 (13%)

Query: 2   TIQDNKKDLK-------LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTE 54
           T Q N +D K        S +R  AR  A QALYQ  + G +  EI +++          
Sbjct: 6   TDQFNPRDAKSPEAAKGKSAKRREARQMATQALYQWHMAGHALNEIEAQFR--------- 56

Query: 55  LDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLE 114
             V++ + +VD  +FR ++HGV   K  ID  +S CL    +   LD++  ++LR    E
Sbjct: 57  --VDNDFSNVDGAYFRELLHGVATNKTEIDTALSPCLD--LTIEELDLVELAVLRLSTFE 112

Query: 115 LIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVS---RKEEIK 160
           L++   VP  V+I+E + +A  +   D  KF+N VLDK++   R+ E+K
Sbjct: 113 LLKRIDVPYRVVINEGIELAKVYGSTDGHKFVNGVLDKLAPRLREVEVK 161


>gi|307945261|ref|ZP_07660597.1| transcription antitermination factor NusB [Roseibium sp. TrichSKD4]
 gi|307771134|gb|EFO30359.1| transcription antitermination factor NusB [Roseibium sp. TrichSKD4]
          Length = 173

 Score =  176 bits (446), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 60/166 (36%), Positives = 99/166 (59%), Gaps = 8/166 (4%)

Query: 1   MTIQDNKKDL-----KLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTEL 55
           M+ Q   K +     + +++RG+ARLAAVQALYQ+D+     + +ISE+  +R   + + 
Sbjct: 1   MSEQAEPKKVATKAVRPANKRGVARLAAVQALYQMDVGEVPLSSVISEFTAFRLGKELDG 60

Query: 56  DVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLEL 115
           +    YL  D +WF+ I++GV + ++ +D  I   LTE W   R+D +L +ILR+G  EL
Sbjct: 61  EQ---YLDADEQWFKSIVNGVFEDQKFLDPFIHKALTEGWPLKRVDSLLRAILRSGSFEL 117

Query: 116 IECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKR 161
           +    VP +VIISEY+ +   F+  DEP  +N VLD+++ +   + 
Sbjct: 118 LRRKDVPPKVIISEYIDVTKAFYEADEPGLVNGVLDRLAHELRNEE 163


>gi|254469407|ref|ZP_05082812.1| transcription antitermination factor NusB [Pseudovibrio sp. JE062]
 gi|211961242|gb|EEA96437.1| transcription antitermination factor NusB [Pseudovibrio sp. JE062]
          Length = 163

 Score =  176 bits (446), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 58/158 (36%), Positives = 99/158 (62%), Gaps = 5/158 (3%)

Query: 1   MTIQDNKKD--LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVE 58
           MT ++NKK+  ++ +++RG+ARLAAVQA+YQ++I G    ++++EYE YR   + + +  
Sbjct: 1   MTTENNKKNAEVRPANKRGVARLAAVQAVYQMEITGARLNDVLNEYEAYRLGQEVDGEQ- 59

Query: 59  SVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIEC 118
             Y   D  WFR ++  V + +  ID  I + L+E W   R+D  L +ILR G  E +  
Sbjct: 60  --YRDADPAWFRDLVQAVFEDQLRIDPRIHTALSEDWPLKRIDTTLRAILRVGCAEFLRK 117

Query: 119 HSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRK 156
             VP  VII+EY+ +A  F+ GDE + +N ++++++R+
Sbjct: 118 KDVPARVIINEYIDVAKSFYEGDEARLVNGIMNRLARE 155


>gi|23012491|ref|ZP_00052562.1| COG0781: Transcription termination factor [Magnetospirillum
           magnetotacticum MS-1]
          Length = 169

 Score =  175 bits (445), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 55/170 (32%), Positives = 93/170 (54%), Gaps = 3/170 (1%)

Query: 1   MTIQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESV 60
           M    +      ++ R  ARLA VQALY+++I      + ++E+E +    + +     V
Sbjct: 1   MNQPADTPAQPKTNTRTGARLAVVQALYEMEISDKGVIDALAEFEAFWIGQEIDG---VV 57

Query: 61  YLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHS 120
           +   +  +FR ++ G ++ ++ ID  + + L + W   RL+++L +ILRAG  EL+    
Sbjct: 58  HPPAETAFFRDVLRGAVEEQRAIDPKLDAALAKGWPLRRLEVVLRAILRAGAYELMFRKD 117

Query: 121 VPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRSGCVSAITQ 170
           VP    ISEYV +AH F+ GDEP  +NAVLD+V R+      G  +A ++
Sbjct: 118 VPARAAISEYVDVAHSFYGGDEPGMVNAVLDRVGREVRSTEFGIPAAPSK 167


>gi|153878112|ref|ZP_02004488.1| transcription antitermination protein NusB [Beggiatoa sp. PS]
 gi|152065424|gb|EDN65512.1| transcription antitermination protein NusB [Beggiatoa sp. PS]
          Length = 164

 Score =  175 bits (444), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 44/154 (28%), Positives = 77/154 (50%), Gaps = 4/154 (2%)

Query: 6   NKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYR-FCADTELDVESVYLHV 64
            +K       R +AR   +QALYQ  + G +T  I S++        + +   E      
Sbjct: 4   KRKTFSPKA-RHVARERVLQALYQWQLTGQNTQLIESQFLDESTLSKEEDESEEPDMQKA 62

Query: 65  DLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVE 124
           D+ +F+ ++H + ++   +D L +  L  K   ++LD +  +ILR G  EL  C  +P +
Sbjct: 63  DIPYFKQLLHSIPEKTSDLDKLFAPFLDRK--ITQLDPVELAILRIGSYELTHCQDIPFK 120

Query: 125 VIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEE 158
           V+I+E V +A  F      K+IN VLDK++  ++
Sbjct: 121 VVINEAVELAKQFGAEQSHKYINGVLDKLAHSQQ 154


>gi|70732819|ref|YP_262586.1| transcription antitermination protein NusB [Pseudomonas fluorescens
           Pf-5]
 gi|119390798|sp|Q4K597|NUSB_PSEF5 RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|68347118|gb|AAY94724.1| N utilization substance protein B [Pseudomonas fluorescens Pf-5]
          Length = 166

 Score =  174 bits (443), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 52/170 (30%), Positives = 84/170 (49%), Gaps = 24/170 (14%)

Query: 2   TIQDNKKDLKLSH--------RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADT 53
           + + N +D K ++        +R  AR  A QALYQ  +   S  EI +++         
Sbjct: 6   SDRFNPRDPKPANAGKPSKSAKRREARQLATQALYQWHMAKHSLNEIEAQFR-------- 57

Query: 54  ELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVL 113
              V++ +  +D  +FR I+HGV   K  ID  +  CL    +   LD +  ++LR    
Sbjct: 58  ---VDNDFTDIDGAYFREILHGVPANKNEIDTALVPCLD--LAIDELDPVELAVLRLSTW 112

Query: 114 ELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVS---RKEEIK 160
           EL++   VP  V+I+E + +A  F   D  KF+N VLDK++   R+ E+K
Sbjct: 113 ELLKRVDVPYRVVINEGIELAKVFGSTDGHKFVNGVLDKLAPRLREAEVK 162


>gi|146281225|ref|YP_001171378.1| transcription antitermination protein NusB [Pseudomonas stutzeri
           A1501]
 gi|166215709|sp|A4VHT5|NUSB_PSEU5 RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|145569430|gb|ABP78536.1| NusB protein [Pseudomonas stutzeri A1501]
 gi|327479379|gb|AEA82689.1| transcription antitermination protein NusB [Pseudomonas stutzeri
           DSM 4166]
          Length = 161

 Score =  174 bits (443), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 46/149 (30%), Positives = 76/149 (51%), Gaps = 16/149 (10%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           R +AR  A+QALYQ  + G S  EI +++            V++ +  VD  +F  +++G
Sbjct: 23  RRVARSLAMQALYQWHMAGQSLNEIEAQFR-----------VDNDFSGVDGAYFHELLNG 71

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
           V  +K  +D  I+  L        LD +  +ILR    EL++   VP  V+I+E + +A 
Sbjct: 72  VARKKTEVDQAIAPNLDR--PLDELDPVELAILRLSTYELMQRIDVPYRVVINEGIELAK 129

Query: 136 DFFYGDEPKFINAVLDKVS---RKEEIKR 161
            +   D  KF+N VLDK++   R  E++ 
Sbjct: 130 VYGATDGHKFVNGVLDKLAPSLRSAEVRN 158


>gi|146308867|ref|YP_001189332.1| transcription antitermination protein NusB [Pseudomonas mendocina
           ymp]
 gi|145577068|gb|ABP86600.1| NusB antitermination factor [Pseudomonas mendocina ymp]
          Length = 159

 Score =  174 bits (443), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 47/164 (28%), Positives = 73/164 (44%), Gaps = 18/164 (10%)

Query: 1   MTIQDNKKDLKLSHR-----RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTEL 55
           M+   N +  K         R  AR  A+QALY   I G    EI +++           
Sbjct: 1   MSNSGNGQPAKKGPSGKILARREARTLAMQALYSWHIAGQPLNEIEAQFR---------- 50

Query: 56  DVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLEL 115
            V++ +  VD  +F  I+HGV  +K  +D   +  L        +D +  +ILR    EL
Sbjct: 51  -VDNDFSKVDGAYFHEILHGVPRQKTELDEAFTPLLDR--PLEEIDPVELAILRLSTYEL 107

Query: 116 IECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEI 159
                VP +V+I+E + +A  F   D  KF+N +LDK++ K   
Sbjct: 108 KNRVDVPYKVVINEGIELAKVFGATDGHKFVNGILDKLAPKLRA 151


>gi|99081967|ref|YP_614121.1| NusB antitermination factor [Ruegeria sp. TM1040]
 gi|99038247|gb|ABF64859.1| NusB antitermination factor [Ruegeria sp. TM1040]
          Length = 160

 Score =  174 bits (443), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 61/162 (37%), Positives = 92/162 (56%), Gaps = 6/162 (3%)

Query: 1   MTIQDNKKDLK-LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVES 59
           MT +D  K  K  +  R  ARL AVQAL+Q++    ST ++I E+E +RF A  E D   
Sbjct: 1   MTSKDAPKPGKNKTQARSAARLYAVQALFQMEQSDQSTNKVIVEFEDHRFGATYEGDE-- 58

Query: 60  VYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECH 119
            Y   D + FR +++  ++ +  ID +    L  KW  +R+D  L ++ RA   E +E  
Sbjct: 59  -YAEGDTKLFRQLVNDAVNHQAKIDQMTDRALVAKWPIARIDPTLRALFRAAGAEFVES- 116

Query: 120 SVPVEVIISEYVCIAHDFF-YGDEPKFINAVLDKVSRKEEIK 160
             PV+V+I+EYV IA  FF  G E  F+NAVLD ++R+ + +
Sbjct: 117 DTPVKVVINEYVDIARAFFPEGREASFVNAVLDHMAREAKPE 158


>gi|330505151|ref|YP_004382020.1| transcription antitermination protein NusB [Pseudomonas mendocina
           NK-01]
 gi|328919437|gb|AEB60268.1| transcription antitermination protein NusB [Pseudomonas mendocina
           NK-01]
          Length = 159

 Score =  174 bits (442), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 48/170 (28%), Positives = 76/170 (44%), Gaps = 21/170 (12%)

Query: 1   MTIQDNKKDLKLSHR-----RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTEL 55
           M+   N +  K         R  AR  A+QALY   I G    EI +++           
Sbjct: 1   MSNSGNGQPAKKGPSGKILARREARTLAMQALYSWHIAGQPLNEIEAQFR---------- 50

Query: 56  DVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLEL 115
            V++ +  VD  +F  I+HGV  +K  +D   +  L        +D +  +ILR    EL
Sbjct: 51  -VDNDFSKVDGAYFHEILHGVPRQKTELDGAFTPLLDR--PLEEIDPVELAILRLSTYEL 107

Query: 116 IECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVS---RKEEIKRS 162
                VP +V+I+E + +A  F   D  KF+N +LDK++   R  E+  +
Sbjct: 108 KNRVDVPYKVVINEGIELAKVFGATDGHKFVNGILDKLAPTLRAAEVNAN 157


>gi|85715455|ref|ZP_01046436.1| transcription antitermination protein NusB [Nitrobacter sp.
           Nb-311A]
 gi|85697650|gb|EAQ35526.1| transcription antitermination protein NusB [Nitrobacter sp.
           Nb-311A]
          Length = 160

 Score =  174 bits (442), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 56/146 (38%), Positives = 90/146 (61%), Gaps = 3/146 (2%)

Query: 11  KLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFR 70
           + ++RRG ARLAAVQALYQ++I G    ++ +E++++    + E D    YL  +  +FR
Sbjct: 10  RKANRRGAARLAAVQALYQMEISGAGVNDVFAEFDSHWLGNEVEGD---RYLPAEAAFFR 66

Query: 71  VIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEY 130
            ++ GV+  +  ID LI   L++ W   R+  IL ++LRAG  EL     +P  V++SEY
Sbjct: 67  DVVAGVVRDQVRIDPLIDDALSKGWPLKRIAAILRAVLRAGSYELEHRKDIPARVVVSEY 126

Query: 131 VCIAHDFFYGDEPKFINAVLDKVSRK 156
           V +AH F   +E   +NAVLD+++R+
Sbjct: 127 VDVAHAFVENEEAGMVNAVLDQIARR 152


>gi|90410900|ref|ZP_01218914.1| transcription antitermination protein NusB [Photobacterium
           profundum 3TCK]
 gi|90328113|gb|EAS44424.1| transcription antitermination protein NusB [Photobacterium
           profundum 3TCK]
          Length = 155

 Score =  174 bits (442), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 43/155 (27%), Positives = 76/155 (49%), Gaps = 6/155 (3%)

Query: 9   DLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESV---YLHVD 65
           ++K + RR  AR  A+QA+Y   I   +  EI  ++ +     + E   ++      H D
Sbjct: 4   NVKPAARRN-ARHFAIQAIYSWQITKGNVAEIEQQFLSDDKFEEEEHQADAPSLAAPHTD 62

Query: 66  LEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEV 125
           L +F  +++GV+   Q +D  +   L+       LD +  ++LR  + E+ +   VP +V
Sbjct: 63  LNYFHDLLNGVVQNHQELDSKMRPYLSR--PLQDLDQMELALLRLAMYEMTKRDDVPYKV 120

Query: 126 IISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIK 160
           +I+E + +A  F   D  KF+N VLDK +     K
Sbjct: 121 VINEAIELAKLFGAEDSHKFVNGVLDKAAPTLRKK 155


>gi|58040838|ref|YP_192802.1| NusB family protein [Gluconobacter oxydans 621H]
 gi|81556897|sp|Q5FNA1|NUSB_GLUOX RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|58003252|gb|AAW62146.1| NusB family protein [Gluconobacter oxydans 621H]
          Length = 160

 Score =  174 bits (441), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 60/158 (37%), Positives = 89/158 (56%), Gaps = 2/158 (1%)

Query: 1   MTIQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESV 60
           MT+ D          R IAR+AAVQAL+Q +  G +   +IS++  +R  + T    +  
Sbjct: 1   MTVTDAPSANPTRRSRTIARVAAVQALFQCEQSGDTAETVISQFIRHRRISSTASFDDGH 60

Query: 61  YLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHS 120
               DL+ F+ I+ GV  R+  ID  +S  L E+W   RLD +L ++LRA V E+     
Sbjct: 61  IPDADLKLFQEIVLGVTRRQDDIDAKLSDVLPEQWPLPRLDPVLRALLRAAVFEI--GTD 118

Query: 121 VPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEE 158
            P  +II+EY+ +AH FF GDEPK +N +LD +SR+  
Sbjct: 119 TPDRIIINEYLDVAHGFFSGDEPKMVNGILDTLSRRAN 156


>gi|16125609|ref|NP_420173.1| transcription antitermination protein NusB [Caulobacter crescentus
           CB15]
 gi|221234359|ref|YP_002516795.1| transcription antitermination protein NusB [Caulobacter crescentus
           NA1000]
 gi|22095966|sp|Q9A8J3|NUSB_CAUCR RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|254772622|sp|B8H535|NUSB_CAUCN RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|13422711|gb|AAK23341.1| N utilization substance protein B [Caulobacter crescentus CB15]
 gi|220963531|gb|ACL94887.1| N utilization substance protein B [Caulobacter crescentus NA1000]
          Length = 149

 Score =  173 bits (440), Expect = 6e-42,   Method: Composition-based stats.
 Identities = 57/143 (39%), Positives = 76/143 (53%), Gaps = 3/143 (2%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           R +ARLAAVQALYQ+++ G     +I E+  +RF  D E +        D  +F  +  G
Sbjct: 9   RSVARLAAVQALYQMEVSGAGVDSVIREFGEHRFDRDVEGEQ---LAAADETFFADLARG 65

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
           V+  +  ID  I   L   W   RLD    ++LRAG  EL+    VP EV+I+EYV IA 
Sbjct: 66  VVTNQAKIDQGIVKRLASGWRLERLDATARAVLRAGAFELMYRSDVPTEVVINEYVEIAK 125

Query: 136 DFFYGDEPKFINAVLDKVSRKEE 158
            FF G E  FIN  LD ++R   
Sbjct: 126 SFFEGPESGFINGALDAIARDAR 148


>gi|146276474|ref|YP_001166633.1| NusB antitermination factor [Rhodobacter sphaeroides ATCC 17025]
 gi|145554715|gb|ABP69328.1| NusB antitermination factor [Rhodobacter sphaeroides ATCC 17025]
          Length = 157

 Score =  173 bits (440), Expect = 6e-42,   Method: Composition-based stats.
 Identities = 59/161 (36%), Positives = 93/161 (57%), Gaps = 10/161 (6%)

Query: 1   MTIQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESV 60
           M+++ +K+ +K       +RL AVQAL+Q++  G +  ++  E+ET+RF A  E D    
Sbjct: 1   MSVKPDKRQMK-----SASRLYAVQALFQMECSGQTVEQVAREFETHRFGAIYEGDE--- 52

Query: 61  YLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHS 120
               D   FR I+ G ++R+  ID L    L  KW   R+D ++ ++ RA   EL+E   
Sbjct: 53  MAEGDARSFRSIVSGAVNRQAGIDQLTDRALVAKWPIDRIDPVIRALFRAAGSELLES-D 111

Query: 121 VPVEVIISEYVCIAHDFF-YGDEPKFINAVLDKVSRKEEIK 160
            P +V+I+E+V IA  FF  G EPKF+NAVLD ++R+   +
Sbjct: 112 TPPKVVINEFVDIAKAFFPDGREPKFVNAVLDHMAREARPE 152


>gi|54307996|ref|YP_129016.1| transcription antitermination protein NusB [Photobacterium
           profundum SS9]
 gi|81615463|sp|Q6LU11|NUSB_PHOPR RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|46912422|emb|CAG19214.1| Putative NusB protein [Photobacterium profundum SS9]
          Length = 151

 Score =  173 bits (440), Expect = 7e-42,   Method: Composition-based stats.
 Identities = 44/154 (28%), Positives = 76/154 (49%), Gaps = 6/154 (3%)

Query: 10  LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYL---HVDL 66
           +K + RR  AR  A+QA+Y   I   +  EI  ++ +     + E   ++  L   H DL
Sbjct: 1   MKPAARRN-ARHFAIQAIYSWQITKGNVAEIEQQFLSDDKFEEEEHQADAPILAAPHTDL 59

Query: 67  EWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVI 126
            +F  +++GV+   Q +D  +   L+       LD +  ++LR  + E+ +   VP +V+
Sbjct: 60  NYFHDLLNGVVQNHQELDSKMRPYLSR--PLQDLDQMELALLRLAMYEMTKREDVPYKVV 117

Query: 127 ISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIK 160
           I+E + +A  F   D  KF+N VLDK +     K
Sbjct: 118 INEAIELAKIFGAEDSHKFVNGVLDKAAPTLRKK 151


>gi|213969286|ref|ZP_03397424.1| transcription antitermination protein NusB [Pseudomonas syringae
           pv. tomato T1]
 gi|301381790|ref|ZP_07230208.1| transcription antitermination protein NusB [Pseudomonas syringae
           pv. tomato Max13]
 gi|302061010|ref|ZP_07252551.1| transcription antitermination protein NusB [Pseudomonas syringae
           pv. tomato K40]
 gi|302130538|ref|ZP_07256528.1| transcription antitermination protein NusB [Pseudomonas syringae
           pv. tomato NCPPB 1108]
 gi|213925964|gb|EEB59521.1| transcription antitermination protein NusB [Pseudomonas syringae
           pv. tomato T1]
 gi|330964918|gb|EGH65178.1| transcription antitermination protein NusB [Pseudomonas syringae
           pv. actinidiae str. M302091]
          Length = 165

 Score =  173 bits (440), Expect = 7e-42,   Method: Composition-based stats.
 Identities = 55/169 (32%), Positives = 86/169 (50%), Gaps = 23/169 (13%)

Query: 2   TIQDNKKDLK-------LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTE 54
           T Q N +D K        S +R  AR  A QALYQ  + G +  EI +++          
Sbjct: 6   TDQFNPRDAKSPEIAKGKSAKRREARQMATQALYQRHMAGHALNEIEAQFR--------- 56

Query: 55  LDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLE 114
             V++ + +VD  +FR ++HGV   +  ID  ++ CL    +   LD I  +ILR    E
Sbjct: 57  --VDNDFSNVDGTYFRELLHGVATNQTEIDTALTPCLD--LTIEELDPIELAILRLSTFE 112

Query: 115 LIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVS---RKEEIK 160
           L++   VP  V+I+E + +A  +   D  KF+N VLDK++   R+ E+K
Sbjct: 113 LLKRIDVPYRVVINEGIELAKVYGSTDGHKFVNGVLDKLAPRLREVEVK 161


>gi|330812010|ref|YP_004356472.1| transcription antitermination protein NusB [Pseudomonas
           brassicacearum subsp. brassicacearum NFM421]
 gi|327380118|gb|AEA71468.1| transcription antitermination protein NusB [Pseudomonas
           brassicacearum subsp. brassicacearum NFM421]
          Length = 166

 Score =  173 bits (439), Expect = 7e-42,   Method: Composition-based stats.
 Identities = 53/170 (31%), Positives = 84/170 (49%), Gaps = 24/170 (14%)

Query: 2   TIQDNKKDLKLSH--------RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADT 53
           + + N +D K +         +R  AR  A QALYQ  +   S  EI +++         
Sbjct: 6   SDRFNPRDPKPADAGKPSKSVKRREARQLATQALYQWHMAKQSLNEIEAQFR-------- 57

Query: 54  ELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVL 113
              V++ +  VD  +FR I+HGV   K  ID  ++ CL    +   LD +  ++LR    
Sbjct: 58  ---VDNDFSDVDGAYFREILHGVPQFKTEIDTALTPCLD--LTIEELDPVELAVLRLSTW 112

Query: 114 ELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVS---RKEEIK 160
           EL++   VP  V+I+E + +A  F   D  KF+N VLDK++   R+ E+K
Sbjct: 113 ELLKRVDVPYRVVINEGIELAKVFGSTDGHKFVNGVLDKLAPRLREAEVK 162


>gi|197105131|ref|YP_002130508.1| N utilization substance protein B [Phenylobacterium zucineum HLK1]
 gi|196478551|gb|ACG78079.1| N utilization substance protein B [Phenylobacterium zucineum HLK1]
          Length = 149

 Score =  173 bits (439), Expect = 7e-42,   Method: Composition-based stats.
 Identities = 56/144 (38%), Positives = 77/144 (53%), Gaps = 3/144 (2%)

Query: 13  SHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVI 72
              R +ARLAAVQALYQ+++       +I E+  +RF  D E +        D  +F  +
Sbjct: 5   RASRSVARLAAVQALYQMEVSSTGVEAVIREFSDHRFDRDVEGE---TLASADEAFFADL 61

Query: 73  IHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVC 132
           + GV+  ++ ID  I   L + W   RLD  + +ILRAG  EL+    VP EV I EYV 
Sbjct: 62  VRGVVREQKPIDAAIVKRLAQGWRLERLDATVRAILRAGAFELMHRSDVPTEVAIDEYVE 121

Query: 133 IAHDFFYGDEPKFINAVLDKVSRK 156
           +   FF G EP F+N  LD V+R 
Sbjct: 122 LTKSFFEGPEPGFVNGALDGVARD 145


>gi|330953122|gb|EGH53382.1| transcription antitermination protein NusB [Pseudomonas syringae
           Cit 7]
          Length = 165

 Score =  173 bits (439), Expect = 8e-42,   Method: Composition-based stats.
 Identities = 55/169 (32%), Positives = 86/169 (50%), Gaps = 23/169 (13%)

Query: 2   TIQDNKKDLK-------LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTE 54
           T Q N +D K        S +R  AR  A QALYQ  + G +  EI +++          
Sbjct: 6   TDQFNPRDAKSPEAAKGKSAKRREARQMATQALYQRHMAGHALNEIEAQFR--------- 56

Query: 55  LDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLE 114
             V++ + +VD  +FR ++HGV   +  ID  +S CL    +   LD I  ++LR    E
Sbjct: 57  --VDNDFSNVDGPYFRELLHGVATNQTEIDAALSPCLD--LTIEELDPIELAVLRLSTFE 112

Query: 115 LIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVS---RKEEIK 160
           L++   VP  V+I+E + +A  +   D  KF+N VLDK++   R+ E+K
Sbjct: 113 LLKRIDVPYRVVINEGIELAKVYGSTDGHKFVNGVLDKLAPRLREVEVK 161


>gi|148255993|ref|YP_001240578.1| transcription antitermination protein NusB [Bradyrhizobium sp.
           BTAi1]
 gi|166918804|sp|A5EKH8|NUSB_BRASB RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|146408166|gb|ABQ36672.1| NusB antitermination factor [Bradyrhizobium sp. BTAi1]
          Length = 169

 Score =  173 bits (439), Expect = 9e-42,   Method: Composition-based stats.
 Identities = 59/158 (37%), Positives = 96/158 (60%), Gaps = 3/158 (1%)

Query: 7   KKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDL 66
           + + + ++RRG ARLAAVQALYQ+DI G    ++++E+E++   ++ E +    YL  + 
Sbjct: 14  RANDRKANRRGAARLAAVQALYQMDIAGAGINDVLAEFESHWLGSEVEGEQ---YLPAEA 70

Query: 67  EWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVI 126
            +FR I+ GV+  +  ID ++ + L   W   R++ IL ++LRAG  EL     VP +V+
Sbjct: 71  AFFRDIVSGVVRDQTKIDPVLDTALERGWPLQRIEAILRAVLRAGAYELERRKDVPAKVV 130

Query: 127 ISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRSGC 164
           +SEYV IAH F   DE   +NAVL++++R+      G 
Sbjct: 131 VSEYVDIAHAFVERDETGMVNAVLEQLARQYRADEMGP 168


>gi|330877563|gb|EGH11712.1| transcription antitermination protein NusB [Pseudomonas syringae
           pv. morsprunorum str. M302280PT]
          Length = 165

 Score =  173 bits (439), Expect = 9e-42,   Method: Composition-based stats.
 Identities = 54/169 (31%), Positives = 86/169 (50%), Gaps = 23/169 (13%)

Query: 2   TIQDNKKDLK-------LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTE 54
           T Q N +D K        S +R  AR  A QALYQ  + G + +EI +++          
Sbjct: 6   TDQFNPRDAKSPEIAKGKSAKRREARQMATQALYQRHMAGHALSEIEAQFR--------- 56

Query: 55  LDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLE 114
             V++ + +VD  +F  ++HGV   +  ID  ++ CL    +   LD I  +ILR    E
Sbjct: 57  --VDNDFSNVDGTYFHELLHGVATNQTEIDTALTPCLD--LTIEELDPIELAILRLSTFE 112

Query: 115 LIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVS---RKEEIK 160
           L++   VP  V+I+E + +A  +   D  KF+N VLDK++   R+ E+K
Sbjct: 113 LLKRIDVPYRVVINEGIELAKVYGSTDGHKFVNGVLDKLAPRLREVEVK 161


>gi|66047685|ref|YP_237526.1| transcription antitermination protein NusB [Pseudomonas syringae
           pv. syringae B728a]
 gi|75500475|sp|Q4ZMY4|NUSB_PSEU2 RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|63258392|gb|AAY39488.1| Antitermination protein NusB [Pseudomonas syringae pv. syringae
           B728a]
          Length = 165

 Score =  173 bits (439), Expect = 9e-42,   Method: Composition-based stats.
 Identities = 55/169 (32%), Positives = 85/169 (50%), Gaps = 23/169 (13%)

Query: 2   TIQDNKKDLK-------LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTE 54
           T Q N +D K        S +R  AR  A QALYQ  + G +  EI +++          
Sbjct: 6   TDQFNPRDAKSPEIAKGKSAKRREARQMATQALYQRHMAGHALNEIEAQFR--------- 56

Query: 55  LDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLE 114
             V++ + +VD  +FR ++HGV   +  ID  +  CL    +   LD I  +ILR    E
Sbjct: 57  --VDNDFSNVDGTYFRELLHGVATNQTEIDTALKPCLD--LTIEELDPIELAILRLSTFE 112

Query: 115 LIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVS---RKEEIK 160
           L++   VP  V+I+E + +A  +   D  KF+N VLDK++   R+ E+K
Sbjct: 113 LLKRIDVPYRVVINEGIELAKVYGSTDGHKFVNGVLDKLAPRLREVEVK 161


>gi|149909343|ref|ZP_01897999.1| transcription antitermination protein NusB [Moritella sp. PE36]
 gi|149807660|gb|EDM67608.1| transcription antitermination protein NusB [Moritella sp. PE36]
          Length = 140

 Score =  173 bits (439), Expect = 9e-42,   Method: Composition-based stats.
 Identities = 45/151 (29%), Positives = 75/151 (49%), Gaps = 14/151 (9%)

Query: 10  LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF 69
           +K S  R  AR  A QA+YQ  +   +   I  ++ T           +  +   D  +F
Sbjct: 1   MKPSE-RSKARQFATQAIYQWQMTQETVANIEHQFVT-----------DQDFSGTDATYF 48

Query: 70  RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISE 129
           R ++ GV      +D L+S  L+     + LD++  +ILR    EL++   VP +V+I+E
Sbjct: 49  RELVLGVSLNSAELDELMSPFLSR--PLNDLDLVEKAILRLSTFELLKRQDVPYKVVINE 106

Query: 130 YVCIAHDFFYGDEPKFINAVLDKVSRKEEIK 160
            + +A DF   D  KF+N VLDK+  K +++
Sbjct: 107 SIELAKDFGAEDSHKFVNGVLDKIVSKLQLR 137


>gi|330969737|gb|EGH69803.1| transcription antitermination protein NusB [Pseudomonas syringae
           pv. aceris str. M302273PT]
          Length = 165

 Score =  172 bits (438), Expect = 9e-42,   Method: Composition-based stats.
 Identities = 55/169 (32%), Positives = 85/169 (50%), Gaps = 23/169 (13%)

Query: 2   TIQDNKKDLK-------LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTE 54
           T Q N +D K        S +R  AR  A QALYQ  + G +  EI +++          
Sbjct: 6   TDQFNPRDAKSPEAAKGKSAKRREARQMATQALYQRHMAGHALNEIEAQFR--------- 56

Query: 55  LDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLE 114
             V++ + +VD  +FR ++HGV   +  ID  +  CL    +   LD I  +ILR    E
Sbjct: 57  --VDNDFSNVDGTYFRELLHGVATNQTEIDTALKPCLD--LTIEELDPIELAILRLSTFE 112

Query: 115 LIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVS---RKEEIK 160
           L++   VP  V+I+E + +A  +   D  KF+N VLDK++   R+ E+K
Sbjct: 113 LLKRIDVPYRVVINEGIELAKVYGSTDGHKFVNGVLDKLAPRLREVEVK 161


>gi|75675914|ref|YP_318335.1| transcription antitermination protein NusB [Nitrobacter
           winogradskyi Nb-255]
 gi|119390791|sp|Q3SRV8|NUSB_NITWN RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|74420784|gb|ABA04983.1| NusB antitermination factor [Nitrobacter winogradskyi Nb-255]
          Length = 161

 Score =  172 bits (438), Expect = 9e-42,   Method: Composition-based stats.
 Identities = 58/146 (39%), Positives = 90/146 (61%), Gaps = 3/146 (2%)

Query: 11  KLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFR 70
           + ++RRG ARLAAVQALYQ++I G    ++ +E++++    + E D    YL  +  +FR
Sbjct: 10  RKANRRGAARLAAVQALYQMEIGGAGINDVFAEFDSHWLGNEVEGD---RYLPAEAAFFR 66

Query: 71  VIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEY 130
            ++ GV+  +  ID LI   L++ W   R+  IL ++LRAG  EL     VP  V++SEY
Sbjct: 67  DVVAGVVRDQVRIDPLIDDALSKSWPLKRVAAILRAVLRAGSYELEHRKDVPARVVVSEY 126

Query: 131 VCIAHDFFYGDEPKFINAVLDKVSRK 156
           V +AH F   DE   +NAVLD+++R+
Sbjct: 127 VDVAHAFVEKDEAGMVNAVLDQIARR 152


>gi|167623143|ref|YP_001673437.1| transcription antitermination protein NusB [Shewanella halifaxensis
           HAW-EB4]
 gi|189035905|sp|B0TJZ1|NUSB_SHEHH RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|167353165|gb|ABZ75778.1| NusB antitermination factor [Shewanella halifaxensis HAW-EB4]
          Length = 135

 Score =  172 bits (438), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 46/149 (30%), Positives = 72/149 (48%), Gaps = 14/149 (9%)

Query: 10  LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF 69
           +K S RR  AR  AVQA+Y   + G +  ++  E+ T           E     VD+ +F
Sbjct: 1   MKPSERR-KARRLAVQAIYSWQLSGNNIADVEHEFLT-----------EQDVAGVDIAYF 48

Query: 70  RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISE 129
           R ++ GV  +K  +D LI+  LT       +D +  +I+R    EL     VP +V I+E
Sbjct: 49  RELLGGVATKKSQLDELITPFLTR--PLDEVDPVEKAIVRIATYELTFRKDVPYKVAINE 106

Query: 130 YVCIAHDFFYGDEPKFINAVLDKVSRKEE 158
            + +A  F   D  KF+N +LDK+  +  
Sbjct: 107 AIELAKAFGAEDGHKFVNGILDKLVARNR 135


>gi|127512123|ref|YP_001093320.1| transcription antitermination protein NusB [Shewanella loihica
           PV-4]
 gi|166215717|sp|A3QC63|NUSB_SHELP RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|126637418|gb|ABO23061.1| NusB antitermination factor [Shewanella loihica PV-4]
          Length = 134

 Score =  172 bits (438), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 45/148 (30%), Positives = 69/148 (46%), Gaps = 14/148 (9%)

Query: 10  LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF 69
           +K S RR  AR  AVQA+Y   + G +  ++  E+ T           E     VD+ +F
Sbjct: 1   MKPSERR-KARRLAVQAIYSWQLSGNNVADVEHEFLT-----------EQKIDGVDVSYF 48

Query: 70  RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISE 129
           R ++ G   +   +D LI   L     F  +  I  ++LR    EL     VP +V I+E
Sbjct: 49  RELLSGTTTKSAQLDELIMPHLER--PFDEVSPIEKAVLRIATYELTFRKDVPYKVAINE 106

Query: 130 YVCIAHDFFYGDEPKFINAVLDKVSRKE 157
            + +A  F   D  KF+N +LDK+  K+
Sbjct: 107 AIELAKAFGAEDGHKFVNGILDKIVAKK 134


>gi|295689070|ref|YP_003592763.1| Nusb antitermination factor [Caulobacter segnis ATCC 21756]
 gi|295430973|gb|ADG10145.1| NusB antitermination factor [Caulobacter segnis ATCC 21756]
          Length = 149

 Score =  172 bits (438), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 55/147 (37%), Positives = 77/147 (52%), Gaps = 3/147 (2%)

Query: 12  LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71
            +  R +ARLAA+QALYQ+++ G     +I E+  +RF  D E +        D  +F  
Sbjct: 5   RTQPRSVARLAAIQALYQMEVSGAGVDSVIREFSEHRFDRDVEGE---RLAAADETFFAE 61

Query: 72  IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
           +  GV+  +  +D  I   L   W   RLD    ++LRAG  EL+    VP EV+I+EYV
Sbjct: 62  LAKGVVAHQAKVDQGIVKRLASGWRLERLDATARAVLRAGAYELMYRPDVPTEVVINEYV 121

Query: 132 CIAHDFFYGDEPKFINAVLDKVSRKEE 158
            IA  FF G E  FIN  LD ++R   
Sbjct: 122 EIAKSFFEGPEAGFINGALDAIARDAR 148


>gi|126175357|ref|YP_001051506.1| transcription antitermination protein NusB [Shewanella baltica
           OS155]
 gi|146293868|ref|YP_001184292.1| transcription antitermination protein NusB [Shewanella putrefaciens
           CN-32]
 gi|153001667|ref|YP_001367348.1| transcription antitermination protein NusB [Shewanella baltica
           OS185]
 gi|160876405|ref|YP_001555721.1| transcription antitermination protein NusB [Shewanella baltica
           OS195]
 gi|217972400|ref|YP_002357151.1| transcription antitermination protein NusB [Shewanella baltica
           OS223]
 gi|304410187|ref|ZP_07391806.1| NusB antitermination factor [Shewanella baltica OS183]
 gi|307302102|ref|ZP_07581860.1| NusB antitermination factor [Shewanella baltica BA175]
 gi|166215715|sp|A3D7C4|NUSB_SHEB5 RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|166215716|sp|A6WR46|NUSB_SHEB8 RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|166215718|sp|A4Y960|NUSB_SHEPC RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|189035904|sp|A9KYJ0|NUSB_SHEB9 RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|254772654|sp|B8E6W7|NUSB_SHEB2 RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|125998562|gb|ABN62637.1| NusB antitermination factor [Shewanella baltica OS155]
 gi|145565558|gb|ABP76493.1| NusB antitermination factor [Shewanella putrefaciens CN-32]
 gi|151366285|gb|ABS09285.1| NusB antitermination factor [Shewanella baltica OS185]
 gi|160861927|gb|ABX50461.1| NusB antitermination factor [Shewanella baltica OS195]
 gi|217497535|gb|ACK45728.1| NusB antitermination factor [Shewanella baltica OS223]
 gi|304351596|gb|EFM15995.1| NusB antitermination factor [Shewanella baltica OS183]
 gi|306914140|gb|EFN44561.1| NusB antitermination factor [Shewanella baltica BA175]
 gi|315268595|gb|ADT95448.1| NusB antitermination factor [Shewanella baltica OS678]
 gi|319427240|gb|ADV55314.1| NusB antitermination factor [Shewanella putrefaciens 200]
          Length = 134

 Score =  172 bits (438), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 46/148 (31%), Positives = 70/148 (47%), Gaps = 15/148 (10%)

Query: 10  LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF 69
           +K S RR  AR  AVQA+Y   + G +  ++  E+ T           E     VD+ +F
Sbjct: 1   MKPSERR-KARRLAVQAIYSWQLSGNNIADVEHEFLT-----------EQSLDGVDVAYF 48

Query: 70  RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISE 129
           R +  GV  +K  +D LI   L        +  +  +I+R    EL     VP +V I+E
Sbjct: 49  RELFSGVATKKTQLDELIIPHLER--PIDEVSPVEKAIVRLATYELTFRKDVPYKVAINE 106

Query: 130 YVCIAHDFFYGDEPKFINAVLDK-VSRK 156
            + +A  F   +  KF+N +LDK V+RK
Sbjct: 107 AIELAKAFGADESHKFVNGLLDKLVARK 134


>gi|294141965|ref|YP_003557943.1| N utilization substance protein B [Shewanella violacea DSS12]
 gi|293328434|dbj|BAJ03165.1| N utilization substance protein B [Shewanella violacea DSS12]
          Length = 134

 Score =  172 bits (438), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 44/148 (29%), Positives = 69/148 (46%), Gaps = 14/148 (9%)

Query: 10  LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF 69
           +K S RR  AR  AVQA+Y   + G +  ++  E+ T           E     +D+ +F
Sbjct: 1   MKPSERR-KARRLAVQAIYSWQLSGNNIADVEHEFLT-----------EQKIDGIDVAYF 48

Query: 70  RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISE 129
           R +  G   +   ID LI   +     F+ +  I  +ILR    EL     VP +V I+E
Sbjct: 49  RELFTGTATKHAQIDELIIPHVER--PFNEVSPIEKAILRMATYELTFRKDVPYKVAINE 106

Query: 130 YVCIAHDFFYGDEPKFINAVLDKVSRKE 157
            + +A  F   D  KF+N +LDK+  ++
Sbjct: 107 AIELAKTFGAEDGHKFVNGILDKIVGRK 134


>gi|167647006|ref|YP_001684669.1| transcription antitermination protein NusB [Caulobacter sp. K31]
 gi|167349436|gb|ABZ72171.1| NusB antitermination factor [Caulobacter sp. K31]
          Length = 153

 Score =  172 bits (437), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 52/141 (36%), Positives = 72/141 (51%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           R +ARLA VQALYQ++  G     ++ E+  +RF  D +          D  +F  +  G
Sbjct: 10  RSVARLAVVQALYQMEQSGVGVDAVVREFAEHRFDRDVDGPDTDRLAAADETFFAELAKG 69

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
           V+  +  +D  I   L   W   RLD    ++LR+G  EL+    VP EV+I EYV IA 
Sbjct: 70  VVAHQAAVDQAIVKRLASGWKLERLDATARAVLRSGAYELMHRPDVPTEVVIDEYVEIAK 129

Query: 136 DFFYGDEPKFINAVLDKVSRK 156
            FF G E  FIN  LD ++R 
Sbjct: 130 SFFEGPESGFINGALDAIARD 150


>gi|284006399|emb|CBA71635.1| N utilization substance protein B [Arsenophonus nasoniae]
          Length = 137

 Score =  172 bits (437), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 42/145 (28%), Positives = 70/145 (48%), Gaps = 14/145 (9%)

Query: 10  LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF 69
           +K +  R  AR  AVQA+Y   + G S  ++  E+ T           E    +VD+ +F
Sbjct: 1   MKPAA-RHRARECAVQAIYSWQLSGNSIADVEEEFLT-----------EQDMSNVDVTYF 48

Query: 70  RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISE 129
           R +++GV      +D  ++  L+ +     L  +  ++LR  + EL   + VP +V I+E
Sbjct: 49  RELLNGVSTHVSELDKKMAPYLSRQ--LEELGQVEKAVLRLAMFELCYRNDVPYKVAINE 106

Query: 130 YVCIAHDFFYGDEPKFINAVLDKVS 154
            + +A  F   +  KFIN  LDKV 
Sbjct: 107 AIELAKVFGAEESHKFINGALDKVV 131


>gi|120598061|ref|YP_962635.1| transcription antitermination protein NusB [Shewanella sp. W3-18-1]
 gi|166215720|sp|A1RHD6|NUSB_SHESW RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|120558154|gb|ABM24081.1| NusB antitermination factor [Shewanella sp. W3-18-1]
          Length = 134

 Score =  172 bits (437), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 46/148 (31%), Positives = 70/148 (47%), Gaps = 15/148 (10%)

Query: 10  LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF 69
           +K S RR  AR  AVQA+Y   + G +  ++  E+ T           E     VD+ +F
Sbjct: 1   MKPSERR-KARRLAVQAIYSWQLSGNNIADVEHEFLT-----------EQSLDGVDVAYF 48

Query: 70  RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISE 129
           R +  GV  +K  +D LI   L        +  +  +I+R    EL     VP +V I+E
Sbjct: 49  RELFSGVATKKPQLDELIIPHLER--PIDEVSPVEKAIVRLATYELTFRKDVPYKVAINE 106

Query: 130 YVCIAHDFFYGDEPKFINAVLDK-VSRK 156
            + +A  F   +  KF+N +LDK V+RK
Sbjct: 107 AIELAKAFGADESHKFVNGLLDKLVARK 134


>gi|325276599|ref|ZP_08142341.1| transcription antitermination protein NusB [Pseudomonas sp. TJI-51]
 gi|324098278|gb|EGB96382.1| transcription antitermination protein NusB [Pseudomonas sp. TJI-51]
          Length = 166

 Score =  172 bits (436), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 56/172 (32%), Positives = 86/172 (50%), Gaps = 24/172 (13%)

Query: 2   TIQDNKKDLKL--------SHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADT 53
           + + N +D K         S +R  AR  A QALYQ  +   S  EI +++         
Sbjct: 6   SDRFNPRDPKPADAGKPSKSAKRREARKLATQALYQWHMAQHSLNEIEAQFR-------- 57

Query: 54  ELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVL 113
              V++ +  VD  +FR I+HGV   K  ID  ++ C+T   +   LD +  ++LR    
Sbjct: 58  ---VDNDFTDVDGAYFREILHGVPAVKDEIDKALAPCMT--IALDELDPVELAVLRLSTW 112

Query: 114 ELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVS---RKEEIKRS 162
           ELI+   VP  V+I+E V +A  F   D  KF+N VLDK++   R+ E+K +
Sbjct: 113 ELIKRVDVPYRVVINEGVELAKVFGATDGHKFVNGVLDKLAPSLREAEVKAN 164


>gi|192359459|ref|YP_001983152.1| transcription antitermination protein NusB [Cellvibrio japonicus
           Ueda107]
 gi|190685624|gb|ACE83302.1| transcription antitermination factor NusB [Cellvibrio japonicus
           Ueda107]
          Length = 168

 Score =  172 bits (436), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 52/167 (31%), Positives = 82/167 (49%), Gaps = 15/167 (8%)

Query: 1   MTIQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESV 60
           MT         ++  R +AR  A+QALYQ  + G S   I +E+ T           ++ 
Sbjct: 12  MTSSPGSDKSHIAATRRMARHYAMQALYQWHMAGSSLNAIEAEFRT-----------DND 60

Query: 61  YLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHS 120
              VD+++F  ++HGV ++   ++      L ++ S   LD I  ++LR    EL     
Sbjct: 61  MSKVDVDYFHELLHGVPEQLSGLEEQFQPFLVDR-SLEELDAITRALLRMATYELKNRID 119

Query: 121 VPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRSGCVSA 167
           VP +V+I+E V +A  F   D  KFIN VLDK +   E+ R+  V+A
Sbjct: 120 VPYKVVINEAVSLAKKFGAEDSHKFINGVLDKTA---EVLRALEVNA 163


>gi|170725747|ref|YP_001759773.1| transcription antitermination protein NusB [Shewanella woodyi ATCC
           51908]
 gi|238688678|sp|B1KJK5|NUSB_SHEWM RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|169811094|gb|ACA85678.1| NusB antitermination factor [Shewanella woodyi ATCC 51908]
          Length = 134

 Score =  172 bits (436), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 42/148 (28%), Positives = 71/148 (47%), Gaps = 14/148 (9%)

Query: 10  LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF 69
           +K S RR  AR  AVQA+Y   + G +  ++  E+ T           E     +D+ +F
Sbjct: 1   MKPSERR-KARRLAVQAIYSWQLSGNNIADVEHEFLT-----------EQKIDGIDVTYF 48

Query: 70  RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISE 129
           R ++ G   ++  ID LI+  +     +  +  I  ++LR    EL     VP +V I+E
Sbjct: 49  RELLSGTATKQAQIDELITPHIER--PYDEVSPIEKAVLRLATYELTFRKDVPYKVAINE 106

Query: 130 YVCIAHDFFYGDEPKFINAVLDKVSRKE 157
            + +A  F   D  KF+N +LDK+  ++
Sbjct: 107 AIELAKAFGAEDGHKFVNGILDKIVGRK 134


>gi|330959944|gb|EGH60204.1| transcription antitermination protein NusB [Pseudomonas syringae
           pv. maculicola str. ES4326]
          Length = 165

 Score =  171 bits (435), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 54/169 (31%), Positives = 86/169 (50%), Gaps = 23/169 (13%)

Query: 2   TIQDNKKDLK-------LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTE 54
           T Q N +D K        S +R  AR  A QALYQ  + G +  EI +++          
Sbjct: 6   TDQFNPRDAKSPEIAKGKSAKRREARQMATQALYQRHMAGHALNEIEAQFR--------- 56

Query: 55  LDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLE 114
             V++ + +VD  +FR ++HGV   +  ID  ++ CL    +   LD I  ++LR    E
Sbjct: 57  --VDNDFSNVDGTYFRELLHGVATNQAEIDAALTPCLD--LTIEELDPIELAVLRLSTFE 112

Query: 115 LIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVS---RKEEIK 160
           L++   VP  V+I+E + +A  +   D  KF+N VLDK++   R+ E+K
Sbjct: 113 LLKRIDVPYRVVINEGIELAKVYGSTDGHKFVNGVLDKLAPRLREVEVK 161


>gi|146341341|ref|YP_001206389.1| transcription antitermination protein NusB [Bradyrhizobium sp.
           ORS278]
 gi|166918805|sp|A4YW92|NUSB_BRASO RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|146194147|emb|CAL78168.1| antitermination factor (L factor) (N utilization substance protein
           B) [Bradyrhizobium sp. ORS278]
          Length = 168

 Score =  171 bits (435), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 59/154 (38%), Positives = 93/154 (60%), Gaps = 3/154 (1%)

Query: 11  KLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFR 70
           + ++RRG ARLAAVQALYQ+DI G    ++++E+E++    + E +    YL  +  +FR
Sbjct: 17  RKANRRGAARLAAVQALYQMDIAGAGINDVLAEFESHWLGNEVEGEQ---YLPAEAAFFR 73

Query: 71  VIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEY 130
            I+ GV+  +  ID ++ + L   W   R++ IL ++LRAG  EL     VP +V++SEY
Sbjct: 74  DIVSGVVRDQTKIDPVLDTALERGWPLQRIEAILRAVLRAGAYELERRKDVPAKVVVSEY 133

Query: 131 VCIAHDFFYGDEPKFINAVLDKVSRKEEIKRSGC 164
           V IAH F   DE   +NAVL++++R+      G 
Sbjct: 134 VDIAHAFVERDETGMVNAVLEQLARQYRGDEMGP 167


>gi|157960994|ref|YP_001501028.1| transcription antitermination protein NusB [Shewanella pealeana
           ATCC 700345]
 gi|189035906|sp|A8H1Q6|NUSB_SHEPA RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|157845994|gb|ABV86493.1| NusB antitermination factor [Shewanella pealeana ATCC 700345]
          Length = 135

 Score =  171 bits (435), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 45/149 (30%), Positives = 73/149 (48%), Gaps = 14/149 (9%)

Query: 10  LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF 69
           +K S RR  AR  AVQA+Y   + G +  ++  E+ T           E     VD+ +F
Sbjct: 1   MKPSERR-KARRLAVQAIYSWQLSGNNIADVEHEFLT-----------EQDVAGVDIAYF 48

Query: 70  RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISE 129
           R ++ GV  +K  +D LI+  +T       +D +  +I+R    EL     VP +V I+E
Sbjct: 49  RELLGGVATKKSQLDELITPFVTR--PLDEVDPVEKAIVRIATYELTFRKDVPYKVAINE 106

Query: 130 YVCIAHDFFYGDEPKFINAVLDKVSRKEE 158
            + +A  F   D  KF+N +LDK+  + +
Sbjct: 107 AIELAKAFGAEDGHKFVNGILDKLVARNK 135


>gi|28867922|ref|NP_790541.1| N utilization substance protein B [Pseudomonas syringae pv. tomato
           str. DC3000]
 gi|32171596|sp|Q889Q5|NUSB_PSESM RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|28851158|gb|AAO54236.1| N utilization substance protein B [Pseudomonas syringae pv. tomato
           str. DC3000]
          Length = 165

 Score =  171 bits (435), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 55/169 (32%), Positives = 86/169 (50%), Gaps = 23/169 (13%)

Query: 2   TIQDNKKDLK-------LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTE 54
           T Q N +D K        S +R  AR  A QALYQ  + G +  EI +++          
Sbjct: 6   TDQFNPRDAKSPEIAKGKSAKRREARQMATQALYQRHMAGHALNEIEAQFR--------- 56

Query: 55  LDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLE 114
             V++ + +VD  +FR ++HGV   +  ID  ++ CL    +   LD I  +ILR    E
Sbjct: 57  --VDNDFSNVDGTYFRELLHGVAINQTEIDTALTPCLD--LTIEELDPIELAILRLSTFE 112

Query: 115 LIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVS---RKEEIK 160
           L++   VP  V+I+E + +A  +   D  KF+N VLDK++   R+ E+K
Sbjct: 113 LLKRIDVPYRVVINEGIELAKVYGSTDGHKFVNGVLDKLAPRLREVEVK 161


>gi|104779852|ref|YP_606350.1| transcription antitermination protein NusB [Pseudomonas entomophila
           L48]
 gi|123079269|sp|Q1IFL9|NUSB_PSEE4 RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|95108839|emb|CAK13535.1| transcription termination, L factor (N utilization substance
           protein B) [Pseudomonas entomophila L48]
          Length = 166

 Score =  171 bits (435), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 53/172 (30%), Positives = 82/172 (47%), Gaps = 24/172 (13%)

Query: 2   TIQDNKKDLKL--------SHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADT 53
           + + N +D K         S +R  AR  A QALYQ  +   S  E+ +++         
Sbjct: 6   SDRFNPRDPKPADAGKPSKSAKRREARKLATQALYQWHMAKHSLNEVEAQFR-------- 57

Query: 54  ELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVL 113
              V++ +  VD  +FR I+HGV  +K  ID  +  CL        LD +  S+LR    
Sbjct: 58  ---VDNDFSDVDGAYFREILHGVPAKKVEIDEALKPCLDT--PLEELDPVELSVLRLSAW 112

Query: 114 ELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVS---RKEEIKRS 162
           E +    VP  V+I+E V +A  F   D  KF+N VLDK++   R+ E++ +
Sbjct: 113 EFMMRADVPYRVVINEGVELAKVFGATDGHKFVNGVLDKLAPRLREAEVRAN 164


>gi|212634192|ref|YP_002310717.1| transcription antitermination protein NusB [Shewanella
           piezotolerans WP3]
 gi|226738906|sp|B8CJN3|NUSB_SHEPW RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|212555676|gb|ACJ28130.1| Antitermination protein NusB [Shewanella piezotolerans WP3]
          Length = 135

 Score =  171 bits (434), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 45/145 (31%), Positives = 70/145 (48%), Gaps = 14/145 (9%)

Query: 10  LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF 69
           +K S RR  AR  AVQA+Y   + G +  ++  E+ T           E     VD+ +F
Sbjct: 1   MKPSERR-KARRLAVQAIYSWQLSGNNIADVEHEFLT-----------EQNVDGVDIAYF 48

Query: 70  RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISE 129
           R ++ GV  +K  +D LI+  L        +D +  +I+R    EL     VP +V I+E
Sbjct: 49  RELLGGVATKKSQLDELITPFLVR--PMDEVDPVEKAIVRLAAYELTFRKDVPYKVAINE 106

Query: 130 YVCIAHDFFYGDEPKFINAVLDKVS 154
            + +A  F   D  KF+N +LDK+ 
Sbjct: 107 AIELAKAFGAEDGHKFVNGILDKLV 131


>gi|110633492|ref|YP_673700.1| transcription antitermination protein NusB [Mesorhizobium sp. BNC1]
 gi|119390783|sp|Q11J90|NUSB_MESSB RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|110284476|gb|ABG62535.1| NusB antitermination factor [Chelativorans sp. BNC1]
          Length = 167

 Score =  171 bits (434), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 72/167 (43%), Positives = 101/167 (60%), Gaps = 6/167 (3%)

Query: 1   MTIQDNKK--DLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVE 58
           MT        + + +++RG ARLAAVQALYQ+D+ G    E  +EYE +R   + + D+ 
Sbjct: 1   MTTPSKSPAENFRPANKRGAARLAAVQALYQMDVAGTGLLETTAEYEAFRLGKEIDGDL- 59

Query: 59  SVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIEC 118
             Y   D +WFR I+ GV++ +  ID +I   LTE W  SRLD  L +ILRAGV EL + 
Sbjct: 60  --YREADAQWFRAILSGVIENQTFIDPVIRQSLTEDWPLSRLDSTLRAILRAGVYELSKR 117

Query: 119 HSVPVEVIISEYVCIAHDF-FYGDEPKFINAVLDKVSRKEEIKRSGC 164
             VPV V++SEY+ IA  F    +EPK +NAVLD+V+R+   +  G 
Sbjct: 118 SDVPVPVVVSEYIDIAKAFYGEEEEPKLVNAVLDRVARRMRGEGKGK 164


>gi|163750010|ref|ZP_02157254.1| transcription antitermination protein NusB [Shewanella benthica
           KT99]
 gi|161330284|gb|EDQ01265.1| transcription antitermination protein NusB [Shewanella benthica
           KT99]
          Length = 134

 Score =  171 bits (434), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 44/148 (29%), Positives = 69/148 (46%), Gaps = 14/148 (9%)

Query: 10  LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF 69
           +K S RR  AR  AVQA+Y   + G +  ++  E+ T           E     +D+ +F
Sbjct: 1   MKPSERR-KARRLAVQAIYSWQLSGNNIADVEHEFLT-----------EQKIDGIDVAYF 48

Query: 70  RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISE 129
           R +  G   +   ID LI   +     F+ +  I  +ILR    EL     VP +V I+E
Sbjct: 49  RELFTGTTTKSAQIDELIIPHVER--PFAEVSPIEKAILRMATYELTFRKDVPYKVAINE 106

Query: 130 YVCIAHDFFYGDEPKFINAVLDKVSRKE 157
            + +A  F   D  KF+N +LDK+  ++
Sbjct: 107 AIELAKTFGAEDGHKFVNGILDKIVGRK 134


>gi|163852577|ref|YP_001640620.1| transcription antitermination factor NusB [Methylobacterium
           extorquens PA1]
 gi|218531417|ref|YP_002422233.1| NusB antitermination factor [Methylobacterium chloromethanicum CM4]
 gi|240139911|ref|YP_002964388.1| transcription antitermination factor [Methylobacterium extorquens
           AM1]
 gi|254562335|ref|YP_003069430.1| transcription antitermination factor [Methylobacterium extorquens
           DM4]
 gi|163664182|gb|ABY31549.1| transcription antitermination factor NusB [Methylobacterium
           extorquens PA1]
 gi|218523720|gb|ACK84305.1| NusB antitermination factor [Methylobacterium chloromethanicum CM4]
 gi|240009885|gb|ACS41111.1| transcription antitermination factor [Methylobacterium extorquens
           AM1]
 gi|254269613|emb|CAX25584.1| transcription antitermination factor [Methylobacterium extorquens
           DM4]
          Length = 171

 Score =  171 bits (433), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 55/168 (32%), Positives = 90/168 (53%), Gaps = 3/168 (1%)

Query: 1   MTIQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESV 60
           MT           + R  ARLA VQALY+++I      E ++E+E +    + +     V
Sbjct: 1   MTDPAATPAQPKPNARTGARLAVVQALYEMEISDKGVIEALAEFEAFWIGQEVDG---VV 57

Query: 61  YLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHS 120
           +   ++ +FR ++ G ++ ++ ID  + + L + W   RL+ +L +ILRAG  EL+    
Sbjct: 58  HPPAEIAFFRDVLRGAVEEQRAIDPKLDTALAKGWPLRRLEAVLRAILRAGAYELMFRRD 117

Query: 121 VPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRSGCVSAI 168
           VP    IS+YV +A+ F+ GDEP  +NAVLD+V R+      G  +A 
Sbjct: 118 VPARAAISQYVEVAYSFYGGDEPGMVNAVLDRVGREVRSTEFGIPAAP 165


>gi|126463172|ref|YP_001044286.1| NusB antitermination factor [Rhodobacter sphaeroides ATCC 17029]
 gi|221640214|ref|YP_002526476.1| NusB antitermination factor [Rhodobacter sphaeroides KD131]
 gi|126104836|gb|ABN77514.1| NusB antitermination factor [Rhodobacter sphaeroides ATCC 17029]
 gi|221160995|gb|ACM01975.1| NusB antitermination factor [Rhodobacter sphaeroides KD131]
          Length = 157

 Score =  171 bits (433), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 57/161 (35%), Positives = 94/161 (58%), Gaps = 10/161 (6%)

Query: 1   MTIQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESV 60
           M+++ +++ +K       +RL AVQAL+Q++  G +  ++  E+ET+RF A  E D    
Sbjct: 1   MSVKPDRRQMK-----SASRLYAVQALFQMETTGQTVEQVAREFETHRFGAVYEGDE--- 52

Query: 61  YLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHS 120
               D + FR I+ G ++R+  ID +    L  KW   R+D ++ ++ RA   EL+E   
Sbjct: 53  MAEGDAKSFRAIVSGAVNRQAGIDQMTDRALVAKWPIDRIDPVIRALFRAAGSELLES-E 111

Query: 121 VPVEVIISEYVCIAHDFF-YGDEPKFINAVLDKVSRKEEIK 160
            P +V+I+E+V IA  FF  G EPKF+NAVLD ++R+   +
Sbjct: 112 TPPKVVINEFVDIAKAFFPEGREPKFVNAVLDHMAREARPE 152


>gi|77461236|ref|YP_350743.1| transcription antitermination protein NusB [Pseudomonas fluorescens
           Pf0-1]
 gi|119390800|sp|Q3K652|NUSB_PSEPF RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|77385239|gb|ABA76752.1| N utilization substance protein B [Pseudomonas fluorescens Pf0-1]
          Length = 166

 Score =  171 bits (433), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 54/170 (31%), Positives = 84/170 (49%), Gaps = 24/170 (14%)

Query: 2   TIQDNKKDLKL--------SHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADT 53
           + + N +D K         S +R  AR  A QALYQ  +   S  EI +++         
Sbjct: 6   SDRFNPRDPKPADAGKPSKSAKRREARQLATQALYQWHMARQSLNEIEAQFR-------- 57

Query: 54  ELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVL 113
              V++ +  VD  +FR I+HGV   K  ID  ++ CL    +   LD +  ++LR    
Sbjct: 58  ---VDNDFTDVDGAYFREILHGVPQFKTEIDNALTPCLD--LAIEELDPVELAVLRLSTW 112

Query: 114 ELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVS---RKEEIK 160
           EL++   VP  V+I+E + +A  F   D  KF+N VLDK++   R+ E+K
Sbjct: 113 ELLKRVDVPYRVVINEGIELAKVFGSTDGHKFVNGVLDKLAPRLREAEVK 162


>gi|259416248|ref|ZP_05740168.1| transcription antitermination factor NusB [Silicibacter sp.
           TrichCH4B]
 gi|259347687|gb|EEW59464.1| transcription antitermination factor NusB [Silicibacter sp.
           TrichCH4B]
          Length = 164

 Score =  171 bits (433), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 60/166 (36%), Positives = 91/166 (54%), Gaps = 10/166 (6%)

Query: 1   MTIQDNKKD-----LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTEL 55
           MT +D  K         +  R  ARL AVQAL+Q++    ST ++I E+E +RF A  E 
Sbjct: 1   MTSKDAPKPGQKPGKNKTQARSAARLYAVQALFQMEQSDQSTNKVIVEFEDHRFGATYEG 60

Query: 56  DVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLEL 115
           D    Y   D + FR +++  ++ +  ID +    L  KW  +R+D  L ++ RA   E 
Sbjct: 61  DE---YAEGDTKLFRKLVNDAVNYQAKIDQMTDRALVAKWPIARIDPTLRALFRAAGAEF 117

Query: 116 IECHSVPVEVIISEYVCIAHDFF-YGDEPKFINAVLDKVSRKEEIK 160
           +E    PV+V+I+EYV IA  FF  G E  F+NAVLD ++R+ + +
Sbjct: 118 VES-DTPVKVVINEYVDIARAFFPEGREASFVNAVLDHMAREAKPE 162


>gi|229592845|ref|YP_002874964.1| transcription antitermination protein NusB [Pseudomonas fluorescens
           SBW25]
 gi|259514879|sp|C3K2R8|NUSB_PSEFS RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|229364711|emb|CAY52674.1| putative N utilisation-related protein [Pseudomonas fluorescens
           SBW25]
          Length = 166

 Score =  171 bits (433), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 50/170 (29%), Positives = 80/170 (47%), Gaps = 24/170 (14%)

Query: 2   TIQDNKKDLKLS--------HRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADT 53
           +   N +D + +         +R  AR  A QALYQ  I G S  EI +++         
Sbjct: 6   SDNFNPRDPRPADAGKPSKNEKRRAARQLATQALYQRQIAGASLNEIEAQFR-------- 57

Query: 54  ELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVL 113
              V++ +   DL +F  I+HGV      ID  ++ CL    +   LD +   ++R    
Sbjct: 58  ---VDNDFTFADLPYFHDILHGVHAHLTEIDAALAPCLD--LTIDELDPVELCVMRLSAW 112

Query: 114 ELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVS---RKEEIK 160
           EL+    VP  V+I+E + +A  +   D  KF+N VLDK++   R+ E+K
Sbjct: 113 ELLYRVDVPYRVVINEGIELAKVYGSTDGHKFVNGVLDKLAPRLREAEVK 162


>gi|220934735|ref|YP_002513634.1| NusB antitermination factor [Thioalkalivibrio sp. HL-EbGR7]
 gi|219996045|gb|ACL72647.1| NusB antitermination factor [Thioalkalivibrio sp. HL-EbGR7]
          Length = 149

 Score =  171 bits (433), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 51/159 (32%), Positives = 81/159 (50%), Gaps = 16/159 (10%)

Query: 1   MTIQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESV 60
           MT  DN++   LSH R  +R  A+QALYQ  + G    +I+ +Y       D EL+    
Sbjct: 1   MTGPDNRR---LSHARRQSRRVAMQALYQWQLTGYHPKDILLQYRE-----DPELE---- 48

Query: 61  YLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHS 120
               D ++FR ++ GV ++   +D L++  +    S + LD +  +ILR    EL +   
Sbjct: 49  --KADADYFRELLLGVTEQVDELDELLAPQMDR--SVAELDPVERAILRLATFELKQRID 104

Query: 121 VPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEI 159
           +P  V+I+E V +   F   D  KF+N VLDK+ R+   
Sbjct: 105 IPYRVVINEAVELTKKFGATDAHKFVNGVLDKLGRQLRA 143


>gi|24374971|ref|NP_719014.1| transcription antitermination protein NusB [Shewanella oneidensis
           MR-1]
 gi|32171648|sp|Q8EBP4|NUSB_SHEON RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|24349697|gb|AAN56458.1|AE015783_1 N utilization substance protein B [Shewanella oneidensis MR-1]
          Length = 134

 Score =  171 bits (433), Expect = 5e-41,   Method: Composition-based stats.
 Identities = 46/148 (31%), Positives = 70/148 (47%), Gaps = 15/148 (10%)

Query: 10  LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF 69
           +K S RR  AR  AVQA+Y   + G +  ++  E+ T           E     VD+ +F
Sbjct: 1   MKPSERR-KARRLAVQAIYSWQLSGNNIADVEHEFLT-----------EQSLDGVDVAYF 48

Query: 70  RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISE 129
           R +  GV  +K  +D LI   L        +  +  +I+R    EL     VP +V I+E
Sbjct: 49  RELFAGVATKKTQLDELIIPHLDR--PIDEVSPVEKAIVRLAAYELTFRKDVPFKVAINE 106

Query: 130 YVCIAHDFFYGDEPKFINAVLDK-VSRK 156
            + +A  F   +  KF+N +LDK V+RK
Sbjct: 107 AIELAKAFGADESHKFVNGLLDKLVARK 134


>gi|330830919|ref|YP_004393871.1| N utilization substance protein B [Aeromonas veronii B565]
 gi|328806055|gb|AEB51254.1| N utilization substance protein B [Aeromonas veronii B565]
          Length = 137

 Score =  170 bits (432), Expect = 5e-41,   Method: Composition-based stats.
 Identities = 44/146 (30%), Positives = 70/146 (47%), Gaps = 14/146 (9%)

Query: 10  LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF 69
           +K S RR  AR  A QA+YQ  +   +  +I  +++           ++     VDL +F
Sbjct: 1   MKPSERR-KARHCATQAIYQWQMTKANVGDIEEQFK-----------IDQDTKGVDLNYF 48

Query: 70  RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISE 129
           R ++ GV      +D + +  L+       +DM+  +ILR    EL     VP  V+I+E
Sbjct: 49  RDLLFGVALHCSELDKVFAPFLSR--PLEEVDMVDKAILRLATYELTRRDDVPPRVVINE 106

Query: 130 YVCIAHDFFYGDEPKFINAVLDKVSR 155
            + +A  F   D  KF+N VLDKV +
Sbjct: 107 AIELAKAFAADDSHKFVNGVLDKVIK 132


>gi|254465261|ref|ZP_05078672.1| transcription antitermination factor NusB [Rhodobacterales
           bacterium Y4I]
 gi|206686169|gb|EDZ46651.1| transcription antitermination factor NusB [Rhodobacterales
           bacterium Y4I]
          Length = 160

 Score =  170 bits (432), Expect = 5e-41,   Method: Composition-based stats.
 Identities = 56/160 (35%), Positives = 89/160 (55%), Gaps = 6/160 (3%)

Query: 1   MTIQDNKKDLK-LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVES 59
           M+ QD++      +  R  ARL A+QAL+Q++  G +  ++I E+E +RF A  E D   
Sbjct: 1   MSTQDSRPKGNGKNQMRSAARLYALQALFQMEQSGQTFDQVIVEFEDHRFGAVYEGDE-- 58

Query: 60  VYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECH 119
                D + FR ++   ++ +  ID +    L  KW  +R+D  L ++ RA   EL +  
Sbjct: 59  -MAEGDTKVFRKLVREAVNYQARIDQMTDRALVAKWPIARIDPTLRALFRAAGAELTQS- 116

Query: 120 SVPVEVIISEYVCIAHDFF-YGDEPKFINAVLDKVSRKEE 158
             P +V+I+E+V IA  FF  G EPKF+NAVLD ++R+  
Sbjct: 117 DTPPKVVINEFVDIARAFFPEGKEPKFVNAVLDHMAREAR 156


>gi|269103251|ref|ZP_06155948.1| transcription termination protein NusB [Photobacterium damselae
           subsp. damselae CIP 102761]
 gi|268163149|gb|EEZ41645.1| transcription termination protein NusB [Photobacterium damselae
           subsp. damselae CIP 102761]
          Length = 152

 Score =  170 bits (432), Expect = 6e-41,   Method: Composition-based stats.
 Identities = 44/148 (29%), Positives = 73/148 (49%), Gaps = 6/148 (4%)

Query: 10  LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYL---HVDL 66
           +K + RR  AR  AVQA+Y   I      +I   + +     + E   E+  L   H D+
Sbjct: 1   MKPAARRN-ARQFAVQAIYSWQITQGDIADIEQHFLSGDKFEEEEYQAEAPVLAAPHTDV 59

Query: 67  EWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVI 126
            +FR +  GV+   Q +D  +   L+       LD +  ++LR  + E+++   VP +V+
Sbjct: 60  NYFRDLFTGVVLNHQDLDSKMRPYLSR--PLQDLDQMELALLRLAMYEMVKREDVPFKVV 117

Query: 127 ISEYVCIAHDFFYGDEPKFINAVLDKVS 154
           I+E + +A  F   D  KF+N VLDK +
Sbjct: 118 INEAIELAKLFGAEDSHKFVNGVLDKAA 145


>gi|117620704|ref|YP_857817.1| transcription antitermination factor NusB [Aeromonas hydrophila
           subsp. hydrophila ATCC 7966]
 gi|254772605|sp|A0KNG6|NUSB_AERHH RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|117562111|gb|ABK39059.1| transcription antitermination factor NusB [Aeromonas hydrophila
           subsp. hydrophila ATCC 7966]
          Length = 137

 Score =  170 bits (432), Expect = 6e-41,   Method: Composition-based stats.
 Identities = 44/146 (30%), Positives = 69/146 (47%), Gaps = 14/146 (9%)

Query: 10  LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF 69
           +K S RR  AR  A QA+YQ  +   +  +I  +++           ++     VDL +F
Sbjct: 1   MKPSERR-KARHCATQAIYQWQMTKANVGDIEEQFK-----------IDQDTKGVDLNYF 48

Query: 70  RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISE 129
           R ++ GV      +D + +  L+       +DM+  +ILR    EL     VP  V I+E
Sbjct: 49  RDLLFGVALHCNELDKVFAPFLSR--PLEEVDMVDKAILRLATYELTRRDDVPPRVAINE 106

Query: 130 YVCIAHDFFYGDEPKFINAVLDKVSR 155
            + +A  F   D  KF+N VLDKV +
Sbjct: 107 AIELAKSFAADDSHKFVNGVLDKVIK 132


>gi|331018230|gb|EGH98286.1| transcription antitermination protein NusB [Pseudomonas syringae
           pv. lachrymans str. M302278PT]
          Length = 165

 Score =  170 bits (431), Expect = 7e-41,   Method: Composition-based stats.
 Identities = 56/169 (33%), Positives = 87/169 (51%), Gaps = 23/169 (13%)

Query: 2   TIQDNKKDLK-------LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTE 54
           T Q N +D K        S +R  AR  A QALYQ  + G +  EI +++          
Sbjct: 6   TDQFNPRDAKSPEIAKGKSAKRREARQMATQALYQRHMAGHALNEIEAQFR--------- 56

Query: 55  LDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLE 114
             V++ + +VD  +FR ++HGV   +  ID  ++SCL    +   LD I  +ILR    E
Sbjct: 57  --VDNDFSNVDGTYFRELLHGVAINQTEIDTALTSCLD--LTIEELDPIELAILRLSTFE 112

Query: 115 LIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVS---RKEEIK 160
           L++   VP  V+I+E + +A  +   D  KF+N VLDK++   R+ E+K
Sbjct: 113 LLKRIDVPYRVVINEGIELAKIYGSTDGHKFVNGVLDKLAPRLREVEVK 161


>gi|170719757|ref|YP_001747445.1| transcription antitermination protein NusB [Pseudomonas putida
           W619]
 gi|229620367|sp|B1J3F6|NUSB_PSEPW RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|169757760|gb|ACA71076.1| NusB antitermination factor [Pseudomonas putida W619]
          Length = 166

 Score =  170 bits (431), Expect = 7e-41,   Method: Composition-based stats.
 Identities = 54/172 (31%), Positives = 83/172 (48%), Gaps = 24/172 (13%)

Query: 2   TIQDNKKDLKL--------SHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADT 53
           + + N +D K         S +R  AR  A QALYQ  +   S  EI +++         
Sbjct: 6   SDRFNPRDPKPADAGKPSKSAKRREARKLATQALYQWHMAQHSLNEIEAQFR-------- 57

Query: 54  ELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVL 113
              V++ +  VD  +FR I+HGV   K  ID  +  C+    +   LD +  ++LR    
Sbjct: 58  ---VDNDFTDVDGAYFREILHGVPAIKSEIDSALKPCMD--IALEELDPVELAVLRLSTW 112

Query: 114 ELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVS---RKEEIKRS 162
           E I+   VP  V+I+E V +A  F   D  KF+N VLDK++   R+ E+K +
Sbjct: 113 EFIKRVDVPYRVVINEGVELAKVFGATDGHKFVNGVLDKLAPSLREAEVKAN 164


>gi|114562217|ref|YP_749730.1| transcription antitermination protein NusB [Shewanella
           frigidimarina NCIMB 400]
 gi|119390819|sp|Q086C3|NUSB_SHEFN RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|114333510|gb|ABI70892.1| NusB antitermination factor [Shewanella frigidimarina NCIMB 400]
          Length = 134

 Score =  169 bits (430), Expect = 9e-41,   Method: Composition-based stats.
 Identities = 44/146 (30%), Positives = 68/146 (46%), Gaps = 14/146 (9%)

Query: 10  LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF 69
           +K S RR  AR  AVQA+Y   +      ++  E+ T           E     VD+ +F
Sbjct: 1   MKPSERR-KARRLAVQAIYSWQLSQNKVADVEHEFLT-----------EQNTDGVDVAYF 48

Query: 70  RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISE 129
           R ++ GV  +   ID L+   L  K  F  +  +  +I+R    EL     VP +V I+E
Sbjct: 49  RELLTGVASKTSQIDELLKPHLDRK--FEEVSPVEKAIVRLATYELTFRKDVPFKVAINE 106

Query: 130 YVCIAHDFFYGDEPKFINAVLDKVSR 155
            + +A  F   D  KF+N +LDK+ +
Sbjct: 107 GIELAKAFGAEDSHKFVNGLLDKLVK 132


>gi|296448765|ref|ZP_06890618.1| NusB antitermination factor [Methylosinus trichosporium OB3b]
 gi|296253723|gb|EFH00897.1| NusB antitermination factor [Methylosinus trichosporium OB3b]
          Length = 152

 Score =  169 bits (429), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 57/149 (38%), Positives = 85/149 (57%), Gaps = 3/149 (2%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           R  +RLA VQALYQ+++ G    EI +E+E +    + E D    Y   +L++FR I+ G
Sbjct: 6   RSASRLAIVQALYQMEVAGKGLNEIYAEFEVHWIGREIEGDQ---YKPAELQFFRDIVKG 62

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
           V+D +  ID  +   L   W   R++ ++ +ILRAG  EL     VPV+V+I EYV +A 
Sbjct: 63  VLDNQTPIDRALDQALQGGWPLQRIESVMRAILRAGAYELGFRRDVPVKVVIKEYVDVAG 122

Query: 136 DFFYGDEPKFINAVLDKVSRKEEIKRSGC 164
            FF   E   INAVLD+++R+   +  G 
Sbjct: 123 AFFGPTESGMINAVLDRLARQARPEHFGE 151


>gi|302383000|ref|YP_003818823.1| NusB antitermination factor [Brevundimonas subvibrioides ATCC
           15264]
 gi|302193628|gb|ADL01200.1| NusB antitermination factor [Brevundimonas subvibrioides ATCC
           15264]
          Length = 176

 Score =  169 bits (429), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 57/150 (38%), Positives = 82/150 (54%), Gaps = 3/150 (2%)

Query: 11  KLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFR 70
           +    R +ARLAAVQALYQ+++ G     +I+E+  +RF AD E +        D  +F 
Sbjct: 29  RQRRARTVARLAAVQALYQMELAGEGVETVITEFSNHRFDADIEGEP---LAEADEAYFA 85

Query: 71  VIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEY 130
            ++ GV+  ++ ID  + + L   W   RLD  L ++LR G  EL     VP E++I EY
Sbjct: 86  DVVRGVIQSQREIDASVKARLASNWRLERLDATLRALLRCGAWELAHRTDVPKEIVIDEY 145

Query: 131 VCIAHDFFYGDEPKFINAVLDKVSRKEEIK 160
           V +A  FF   E KF+NA LD V+R    K
Sbjct: 146 VELAKAFFDEAEAKFVNAALDGVARDVRPK 175


>gi|26987256|ref|NP_742681.1| transcription antitermination protein NusB [Pseudomonas putida
           KT2440]
 gi|148545803|ref|YP_001265905.1| transcription antitermination protein NusB [Pseudomonas putida F1]
 gi|167031580|ref|YP_001666811.1| transcription antitermination protein NusB [Pseudomonas putida
           GB-1]
 gi|32171603|sp|Q88QH5|NUSB_PSEPK RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|166215708|sp|A5VXW1|NUSB_PSEP1 RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|189035897|sp|B0KL71|NUSB_PSEPG RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|24981898|gb|AAN66145.1|AE016242_13 N utilization substance protein B [Pseudomonas putida KT2440]
 gi|148509861|gb|ABQ76721.1| NusB antitermination factor [Pseudomonas putida F1]
 gi|166858068|gb|ABY96475.1| NusB antitermination factor [Pseudomonas putida GB-1]
 gi|313496885|gb|ADR58251.1| NusB [Pseudomonas putida BIRD-1]
          Length = 166

 Score =  169 bits (429), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 56/172 (32%), Positives = 85/172 (49%), Gaps = 24/172 (13%)

Query: 2   TIQDNKKDLKL--------SHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADT 53
           + + N +D K         S +R  AR  A QALYQ  +   S  EI +++         
Sbjct: 6   SDRFNPRDPKPADAGKPSKSAKRREARKLATQALYQWHMAQHSLNEIEAQFR-------- 57

Query: 54  ELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVL 113
              V++ +  VD  +FR I+HGV   K  ID  +  C+T   +   LD +  ++LR    
Sbjct: 58  ---VDNDFTDVDGAYFREILHGVPAIKGEIDKALVPCMT--IALEELDPVELAVLRLSTW 112

Query: 114 ELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVS---RKEEIKRS 162
           ELI+   VP  V+I+E V +A  F   D  KF+N VLDK++   R+ E+K +
Sbjct: 113 ELIKRVDVPYRVVINEGVELAKVFGATDGHKFVNGVLDKLAPALREAEVKAN 164


>gi|91792506|ref|YP_562157.1| transcription antitermination protein NusB [Shewanella
           denitrificans OS217]
 gi|119390818|sp|Q12Q42|NUSB_SHEDO RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|91714508|gb|ABE54434.1| NusB antitermination factor [Shewanella denitrificans OS217]
          Length = 133

 Score =  169 bits (429), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 45/147 (30%), Positives = 71/147 (48%), Gaps = 14/147 (9%)

Query: 10  LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF 69
           +K S RR  AR  AVQA+Y   +   +  ++  E+ T           E     VD+ +F
Sbjct: 1   MKPSERR-KARRLAVQAIYSWQLSKNNVADVEHEFIT-----------EQNIDGVDVAYF 48

Query: 70  RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISE 129
           R ++ GV  + + ID L+   L  K  F  +  +  +I+R    EL     VP +V I+E
Sbjct: 49  RELLAGVASKHEQIDDLLRPHLDRK--FEDVSPVEKAIVRLAGYELTFRKDVPYKVAINE 106

Query: 130 YVCIAHDFFYGDEPKFINAVLDKVSRK 156
            + +A  F   D  KF+N +LDK+ R+
Sbjct: 107 AIELAKAFGADDSHKFVNGLLDKLVRR 133


>gi|298529745|ref|ZP_07017148.1| NusB antitermination factor [Desulfonatronospira thiodismutans
           ASO3-1]
 gi|298511181|gb|EFI35084.1| NusB antitermination factor [Desulfonatronospira thiodismutans
           ASO3-1]
          Length = 157

 Score =  169 bits (429), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 41/165 (24%), Positives = 75/165 (45%), Gaps = 9/165 (5%)

Query: 3   IQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYL 62
           +  +K   K +H R   R  A Q LY +     + T I+  +  ++   DT        +
Sbjct: 1   MTRHKPRTKTTHSRHAQREFAFQVLYSLHF-DQTGTHILDTFHHFKNDQDT-------AV 52

Query: 63  HVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVP 122
             D+ +   +I+GV +  + +D  I    ++ W   R+ M+  +I+R  V E+I    +P
Sbjct: 53  QQDMSYALQLINGVRENLEELDAAIGRH-SQNWKVKRIAMVELTIMRLAVYEMIYREDIP 111

Query: 123 VEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRSGCVSA 167
           V+V I+E + +A  F   +   F+N +LD V+R       G  + 
Sbjct: 112 VKVGINEAIELAKTFGDNNSRNFVNGILDAVARDMRHGEPGTDAG 156


>gi|145298021|ref|YP_001140862.1| antitermination protein NusB [Aeromonas salmonicida subsp.
           salmonicida A449]
 gi|254772606|sp|A4SJP2|NUSB_AERS4 RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|142850793|gb|ABO89114.1| Antitermination protein NusB [Aeromonas salmonicida subsp.
           salmonicida A449]
          Length = 137

 Score =  169 bits (428), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 44/146 (30%), Positives = 70/146 (47%), Gaps = 14/146 (9%)

Query: 10  LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF 69
           +K S RR  AR  A QA+YQ  +   +  +I  +++           ++     VDL +F
Sbjct: 1   MKPSERR-KARHCATQAIYQWQMTRANVGDIEEQFK-----------IDQDTKGVDLNYF 48

Query: 70  RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISE 129
           R ++ GV      +D + +  L+       +DM+  +ILR    EL     VP  V+I+E
Sbjct: 49  RDLLFGVALHCNELDKVFAPFLSR--PLEEVDMVDKAILRLATYELTRRDDVPPRVVINE 106

Query: 130 YVCIAHDFFYGDEPKFINAVLDKVSR 155
            + +A  F   D  KF+N VLDKV +
Sbjct: 107 AIELAKAFAADDSHKFVNGVLDKVIK 132


>gi|219872292|ref|YP_002476667.1| transcription antitermination protein NusB [Haemophilus parasuis
           SH0165]
 gi|254772642|sp|B8F8R7|NUSB_HAEPS RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|219692496|gb|ACL33719.1| transcription antitermination protein N utilization substance B
           (NusB) [Haemophilus parasuis SH0165]
          Length = 137

 Score =  169 bits (428), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 46/151 (30%), Positives = 71/151 (47%), Gaps = 14/151 (9%)

Query: 10  LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF 69
           +K+S RR  AR  AVQALY   I   S  ++   + T           +     VD+ +F
Sbjct: 1   MKVSPRRR-ARECAVQALYSWYISQNSIEQVELAFVT-----------DQDMQGVDMPYF 48

Query: 70  RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISE 129
           R ++ G ++    ID ++   L    + + LD I  +ILR    EL     VP +V I+E
Sbjct: 49  RKLLRGTVENVDVIDDILRPYLDR--ADNELDPIERTILRLAGYELKFELDVPYKVAINE 106

Query: 130 YVCIAHDFFYGDEPKFINAVLDKVSRKEEIK 160
            + +A  F   D  K++N VLDK++     K
Sbjct: 107 AIEVAKVFGSDDSHKYVNGVLDKLAPALNRK 137


>gi|312963299|ref|ZP_07777782.1| N utilization substance protein B [Pseudomonas fluorescens WH6]
 gi|311282379|gb|EFQ60977.1| N utilization substance protein B [Pseudomonas fluorescens WH6]
          Length = 166

 Score =  169 bits (428), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 48/155 (30%), Positives = 76/155 (49%), Gaps = 16/155 (10%)

Query: 9   DLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEW 68
               S +R  AR  A QALYQ  + G S  EI +++            V++ +   D  +
Sbjct: 21  KPSKSEKRRAARQLATQALYQRHMAGTSLNEIEAQFR-----------VDNDFTFADQSY 69

Query: 69  FRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIIS 128
           F  I+HGV      ID  ++ CL    +   LD +  ++LR    EL++   VP  V+I+
Sbjct: 70  FHDILHGVPANLTEIDAALTPCLD--LTLEELDPVELAVLRLSTWELLKRVDVPYRVVIN 127

Query: 129 EYVCIAHDFFYGDEPKFINAVLDKVS---RKEEIK 160
           E + +A  +   D  KF+N VLDK++   R+ E+K
Sbjct: 128 EGIELAKVYGSTDGHKFVNGVLDKLAPRLREAEVK 162


>gi|254787582|ref|YP_003075011.1| transcription antitermination protein NusB [Teredinibacter turnerae
           T7901]
 gi|259514910|sp|C5BS84|NUSB_TERTT RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|237683677|gb|ACR10941.1| putative transcription antitermination factor NusB [Teredinibacter
           turnerae T7901]
          Length = 147

 Score =  169 bits (428), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 46/146 (31%), Positives = 69/146 (47%), Gaps = 13/146 (8%)

Query: 10  LK-LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEW 68
           +K  +  R  AR  A+QA+YQ  + G     I +E+ T           ++    VD E+
Sbjct: 1   MKVTAATRSRARHFAMQAIYQWQMNGNPLHVIEAEFHT-----------DNDMSKVDTEY 49

Query: 69  FRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIIS 128
           F  + HGV   K  +D      L +     +LD +  ++LR    EL     VP +V+I+
Sbjct: 50  FHELFHGVAADKSALDACFLPHL-KSLPLEKLDPVTLALLRQATFELKNRVDVPYKVVIN 108

Query: 129 EYVCIAHDFFYGDEPKFINAVLDKVS 154
           E V +A  F   D  KF+N VLDKV+
Sbjct: 109 EAVNLAKKFGAEDSHKFVNGVLDKVA 134


>gi|262274775|ref|ZP_06052586.1| transcription termination protein NusB [Grimontia hollisae CIP
           101886]
 gi|262221338|gb|EEY72652.1| transcription termination protein NusB [Grimontia hollisae CIP
           101886]
          Length = 151

 Score =  169 bits (428), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 43/154 (27%), Positives = 73/154 (47%), Gaps = 6/154 (3%)

Query: 10  LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEY---ETYRFCADTELDVESVYLHVDL 66
           +K + RR  AR  A+QA+Y   +   +  +I +++   + Y        +        D+
Sbjct: 1   MKPAARRN-ARHFALQAIYSWQLTKDNVADIEAQFLAADNYEEEEHQAEEPRLRQPETDV 59

Query: 67  EWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVI 126
           E+FR ++ GV+   Q +D  +   L+       LD +  +ILR  + EL +   VP +V+
Sbjct: 60  EYFRDLLSGVVLNYQELDSKMRPYLSR--PLQDLDEMEHAILRLSMYELCKREDVPYKVV 117

Query: 127 ISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIK 160
           I+E + +A  F   D  KF+N VLDK       K
Sbjct: 118 INEAIELAKRFGAEDSHKFVNGVLDKAVPTLRKK 151


>gi|260434089|ref|ZP_05788060.1| transcription antitermination factor NusB [Silicibacter
           lacuscaerulensis ITI-1157]
 gi|260417917|gb|EEX11176.1| transcription antitermination factor NusB [Silicibacter
           lacuscaerulensis ITI-1157]
          Length = 160

 Score =  169 bits (428), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 57/162 (35%), Positives = 89/162 (54%), Gaps = 6/162 (3%)

Query: 1   MTIQDNKKDLKLSH-RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVES 59
           MT  D  K        +  ARL AVQAL+Q++  G +T ++++E+  +RF A  E D   
Sbjct: 1   MTQTDTPKPANRKRLMKSAARLYAVQALFQMEQSGQTTEQVVNEFLDHRFGAVYEGDE-- 58

Query: 60  VYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECH 119
             L  D   FR ++   ++ +  ID +    L  KW  SR+D  L ++ RA   EL +  
Sbjct: 59  -MLEGDSALFRKLVDDAVNYQAPIDQMTDRALVAKWPISRIDPTLRALFRAAGAELSQS- 116

Query: 120 SVPVEVIISEYVCIAHDFF-YGDEPKFINAVLDKVSRKEEIK 160
             P +V+I+E+V +A  FF  G EPKF+NAVLD ++R+ + +
Sbjct: 117 DTPPKVVITEFVDVARAFFPEGKEPKFVNAVLDHMAREAKPE 158


>gi|157374416|ref|YP_001473016.1| transcription antitermination protein NusB [Shewanella sediminis
           HAW-EB3]
 gi|189035907|sp|A8FSR5|NUSB_SHESH RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|157316790|gb|ABV35888.1| NusB antitermination factor [Shewanella sediminis HAW-EB3]
          Length = 134

 Score =  169 bits (428), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 41/148 (27%), Positives = 70/148 (47%), Gaps = 14/148 (9%)

Query: 10  LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF 69
           +K S RR  AR  AVQA+Y   + G +  ++  E+ T           E     +D+ +F
Sbjct: 1   MKPSERR-KARRLAVQAIYSWQLSGNNIADVEHEFLT-----------EQKIDGIDVAYF 48

Query: 70  RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISE 129
           R ++ G   ++  ID  I   +     ++ +  I  ++LR    EL     VP +V I+E
Sbjct: 49  RELLSGTATKQAQIDEQIIPHIER--PYNEVSPIEKAVLRLATYELTFRKDVPYKVAINE 106

Query: 130 YVCIAHDFFYGDEPKFINAVLDKVSRKE 157
            + +A  F   D  KF+N +LDK+  ++
Sbjct: 107 AIELAKAFGAEDGHKFVNGILDKIVGRK 134


>gi|90579826|ref|ZP_01235634.1| transcription antitermination protein NusB [Vibrio angustum S14]
 gi|330445271|ref|ZP_08308923.1| transcription antitermination factor NusB [Photobacterium
           leiognathi subsp. mandapamensis svers.1.1.]
 gi|90438711|gb|EAS63894.1| transcription antitermination protein NusB [Vibrio angustum S14]
 gi|328489462|dbj|GAA03420.1| transcription antitermination factor NusB [Photobacterium
           leiognathi subsp. mandapamensis svers.1.1.]
          Length = 156

 Score =  169 bits (428), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 42/155 (27%), Positives = 76/155 (49%), Gaps = 6/155 (3%)

Query: 10  LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYL---HVDL 66
           +K + RR  AR  AVQA+Y   +   +  +I   + +     + E   ++  L   H D+
Sbjct: 5   VKPAARRN-ARQFAVQAIYSWQLTKGNVADIEQHFLSGDKFEEEEHQADAPVLAAPHTDV 63

Query: 67  EWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVI 126
            +FR +  GV+   Q +D  +   L+       LD +  ++LR  + E+++   VP +V+
Sbjct: 64  SYFRDLFTGVVLSHQELDSKMRPYLSR--PLQDLDQMELALLRLAMYEMVKREDVPFKVV 121

Query: 127 ISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKR 161
           I+E + +A  F   D  KF+N VLDK +     ++
Sbjct: 122 INEAIELAKLFGAEDSHKFVNGVLDKAAPTLRKEK 156


>gi|16759395|ref|NP_455012.1| transcription antitermination protein NusB [Salmonella enterica
           subsp. enterica serovar Typhi str. CT18]
 gi|29142833|ref|NP_806175.1| transcription antitermination protein NusB [Salmonella enterica
           subsp. enterica serovar Typhi str. Ty2]
 gi|213027238|ref|ZP_03341685.1| transcription antitermination protein NusB [Salmonella enterica
           subsp. enterica serovar Typhi str. 404ty]
 gi|213163226|ref|ZP_03348936.1| transcription antitermination protein NusB [Salmonella enterica
           subsp. enterica serovar Typhi str. E00-7866]
 gi|213418053|ref|ZP_03351130.1| transcription antitermination protein NusB [Salmonella enterica
           subsp. enterica serovar Typhi str. E01-6750]
 gi|213579887|ref|ZP_03361713.1| transcription antitermination protein NusB [Salmonella enterica
           subsp. enterica serovar Typhi str. E98-0664]
 gi|213615893|ref|ZP_03371719.1| transcription antitermination protein NusB [Salmonella enterica
           subsp. enterica serovar Typhi str. E98-2068]
 gi|213650170|ref|ZP_03380223.1| transcription antitermination protein NusB [Salmonella enterica
           subsp. enterica serovar Typhi str. J185]
 gi|213855378|ref|ZP_03383618.1| transcription antitermination protein NusB [Salmonella enterica
           subsp. enterica serovar Typhi str. M223]
 gi|289804986|ref|ZP_06535615.1| transcription antitermination protein NusB [Salmonella enterica
           subsp. enterica serovar Typhi str. AG3]
 gi|289825061|ref|ZP_06544413.1| transcription antitermination protein NusB [Salmonella enterica
           subsp. enterica serovar Typhi str. E98-3139]
 gi|22095954|sp|Q8Z8X6|NUSB_SALTI RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|25299803|pir||AB0554 N utilization substance protein B [imported] - Salmonella enterica
           subsp. enterica serovar Typhi (strain CT18)
 gi|16501686|emb|CAD08874.1| N utilization substance protein B [Salmonella enterica subsp.
           enterica serovar Typhi]
 gi|29138465|gb|AAO70035.1| N utilization substance protein B [Salmonella enterica subsp.
           enterica serovar Typhi str. Ty2]
          Length = 139

 Score =  169 bits (428), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 40/145 (27%), Positives = 66/145 (45%), Gaps = 14/145 (9%)

Query: 10  LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF 69
           +K +  R  AR  AVQALY   +      ++  ++             E     VD+ +F
Sbjct: 1   MKPAA-RHRARECAVQALYSWQLSQNDIADVEYQFLA-----------EQDVKDVDVLYF 48

Query: 70  RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISE 129
           R ++ GV     ++D L+   L+       L  +  ++LR  + EL +   VP +V I+E
Sbjct: 49  RELLSGVATNSAYLDGLMKPYLSR--LLEELGQVEKAVLRIALFELSKRSDVPYKVAINE 106

Query: 130 YVCIAHDFFYGDEPKFINAVLDKVS 154
            + +A  F   D  KF+N VLDK +
Sbjct: 107 AIELAKTFGAEDSHKFVNGVLDKAA 131


>gi|167855582|ref|ZP_02478342.1| transcription antitermination protein NusB [Haemophilus parasuis
           29755]
 gi|167853273|gb|EDS24527.1| transcription antitermination protein NusB [Haemophilus parasuis
           29755]
          Length = 137

 Score =  168 bits (427), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 46/151 (30%), Positives = 71/151 (47%), Gaps = 14/151 (9%)

Query: 10  LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF 69
           +K+S RR  AR  AVQALY   I   S  ++   + T           +     VD+ +F
Sbjct: 1   MKVSPRRR-ARECAVQALYSWYISQNSIEQVELAFVT-----------DQDMQGVDMPYF 48

Query: 70  RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISE 129
           R ++ G ++    ID ++   L    + + LD I  +ILR    EL     VP +V I+E
Sbjct: 49  RKLLRGTVENVDVIDDILRPYLDR--ADNELDPIERTILRLASYELKFELDVPYKVAINE 106

Query: 130 YVCIAHDFFYGDEPKFINAVLDKVSRKEEIK 160
            + +A  F   D  K++N VLDK++     K
Sbjct: 107 AIEVAKVFGSDDSHKYVNGVLDKLAPALNRK 137


>gi|325578284|ref|ZP_08148419.1| transcription termination/antitermination factor NusB [Haemophilus
           parainfluenzae ATCC 33392]
 gi|325160020|gb|EGC72149.1| transcription termination/antitermination factor NusB [Haemophilus
           parainfluenzae ATCC 33392]
          Length = 145

 Score =  168 bits (427), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 44/152 (28%), Positives = 68/152 (44%), Gaps = 13/152 (8%)

Query: 3   IQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYL 62
           + D K+ +K    R  AR  AVQALY   + G +  ++   +            V+    
Sbjct: 1   MTDKKEPVKKVSPRRRARECAVQALYSWALSGNAPEQVELTFV-----------VDQDLK 49

Query: 63  HVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVP 122
            VD  +F  +    +   + +D  +S  L    +   LD I  +ILR  V EL     VP
Sbjct: 50  GVDKPYFSRLFRQTVANVEAVDFSMSHYLDR--ALDELDPIERAILRLAVYELQFEPDVP 107

Query: 123 VEVIISEYVCIAHDFFYGDEPKFINAVLDKVS 154
            +V I+E + +A  F   +  K+IN VLDKV+
Sbjct: 108 YKVAINEAIEVAKVFGADESHKYINGVLDKVA 139


>gi|119774157|ref|YP_926897.1| transcription antitermination protein NusB [Shewanella amazonensis
           SB2B]
 gi|166215714|sp|A1S4C1|NUSB_SHEAM RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|119766657|gb|ABL99227.1| NusB antitermination factor [Shewanella amazonensis SB2B]
          Length = 134

 Score =  168 bits (427), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 42/148 (28%), Positives = 67/148 (45%), Gaps = 14/148 (9%)

Query: 10  LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF 69
           +K S RR  AR  AVQA+Y   + G +  ++  E+ T           E     VD+ +F
Sbjct: 1   MKPSERR-KARRLAVQAIYSWQLSGNNVADVEHEFLT-----------EQELDGVDVAYF 48

Query: 70  RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISE 129
           R +  G   +   +D  +   L        +  +  +ILR  V EL     VP +V+I+E
Sbjct: 49  RELFAGAATKTAQLDEKLKPLLDR--PLEEVSPVEKAILRLAVYELTFRKDVPYKVVINE 106

Query: 130 YVCIAHDFFYGDEPKFINAVLDKVSRKE 157
            + +A  F   D  KF+N +LDK+  + 
Sbjct: 107 AIELAKSFGAEDGHKFVNGILDKLVARN 134


>gi|113969444|ref|YP_733237.1| transcription antitermination protein NusB [Shewanella sp. MR-4]
 gi|114046672|ref|YP_737222.1| transcription antitermination protein NusB [Shewanella sp. MR-7]
 gi|117919549|ref|YP_868741.1| transcription antitermination protein NusB [Shewanella sp. ANA-3]
 gi|119390820|sp|Q0HL87|NUSB_SHESM RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|119390821|sp|Q0HXJ0|NUSB_SHESR RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|166215719|sp|A0KU66|NUSB_SHESA RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|113884128|gb|ABI38180.1| NusB antitermination factor [Shewanella sp. MR-4]
 gi|113888114|gb|ABI42165.1| NusB antitermination factor [Shewanella sp. MR-7]
 gi|117611881|gb|ABK47335.1| NusB antitermination factor [Shewanella sp. ANA-3]
          Length = 134

 Score =  168 bits (426), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 45/148 (30%), Positives = 69/148 (46%), Gaps = 15/148 (10%)

Query: 10  LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF 69
           +K S RR  AR  AVQA+Y   + G +  ++  E+ T           E     VD+ +F
Sbjct: 1   MKPSERR-KARRLAVQAIYSWQLSGNNIADVEHEFLT-----------EQSLDGVDVAYF 48

Query: 70  RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISE 129
           R +  GV  +K  +D L    L        +  +  +I+R    EL     VP +V I+E
Sbjct: 49  RELFAGVATKKTQLDELFIPHLDR--PIDEVSPVEKAIVRLAAYELTFRKDVPFKVAINE 106

Query: 130 YVCIAHDFFYGDEPKFINAVLDK-VSRK 156
            + +A  F   +  KF+N +LDK V+RK
Sbjct: 107 AIELAKAFGADESHKFVNGLLDKLVARK 134


>gi|89073134|ref|ZP_01159673.1| transcription antitermination protein NusB [Photobacterium sp.
           SKA34]
 gi|89051087|gb|EAR56544.1| transcription antitermination protein NusB [Photobacterium sp.
           SKA34]
          Length = 156

 Score =  168 bits (426), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 43/155 (27%), Positives = 76/155 (49%), Gaps = 6/155 (3%)

Query: 10  LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYL---HVDL 66
           +K + RR  AR  AVQA+Y   +   +  +I   + +     + E   ++  L   H D+
Sbjct: 5   VKPAARRN-ARQFAVQAIYSWQLTKGNVADIEQHFLSGDKFEEEEHQADAPVLAAPHTDV 63

Query: 67  EWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVI 126
            +FR +  GV+   Q +D  +   L+       LD +  ++LR  + E+++   VP +V+
Sbjct: 64  SYFRDLFTGVVLSHQELDSKMRPYLSR--PLQDLDQMELALLRLAMYEMVKREDVPFKVV 121

Query: 127 ISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKR 161
           I+E + +A  F   D  KFIN VLDK +     ++
Sbjct: 122 INEAIELAKLFGAEDSHKFINGVLDKAAPTLRKEK 156


>gi|59711311|ref|YP_204087.1| transcription antitermination protein NusB [Vibrio fischeri ES114]
 gi|197335476|ref|YP_002155467.1| transcription antitermination factor NusB [Vibrio fischeri MJ11]
 gi|31076819|sp|Q8G9G3|NUSB_VIBFI RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|75431770|sp|Q5E6Z7|NUSB_VIBF1 RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|238690266|sp|B5FBF9|NUSB_VIBFM RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|26522774|dbj|BAC44861.1| NusB protein [Vibrio fischeri]
 gi|59479412|gb|AAW85199.1| transcription antitermination factor NusB [Vibrio fischeri ES114]
 gi|197316966|gb|ACH66413.1| transcription antitermination factor NusB [Vibrio fischeri MJ11]
          Length = 155

 Score =  167 bits (425), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 40/155 (25%), Positives = 71/155 (45%), Gaps = 6/155 (3%)

Query: 9   DLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTEL---DVESVYLHVD 65
            +K + RR  AR  A+QA+Y   +   +  +I  ++ T     + E    + +      D
Sbjct: 4   SVKPAARRN-ARQFALQAIYSWQLSKENVADIEEQFLTAEKYDEEEHHANEPKLQTPETD 62

Query: 66  LEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEV 125
           + +FR +  GV      +D  +   L+       LD +  ++LR  + E++    VP +V
Sbjct: 63  VAYFRDLFSGVALNHMKLDGKMRPYLSR--PLQDLDQMELALLRMSIYEMMNRDDVPYKV 120

Query: 126 IISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIK 160
           +I+E + +A  F   D  KF+N VLDK +     K
Sbjct: 121 VINEAIELAKVFAAEDSHKFVNGVLDKAAPTLRKK 155


>gi|301156187|emb|CBW15658.1| transcription antitermination protein [Haemophilus parainfluenzae
           T3T1]
          Length = 145

 Score =  167 bits (425), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 43/152 (28%), Positives = 67/152 (44%), Gaps = 13/152 (8%)

Query: 3   IQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYL 62
           + + K+ +K    R  AR  AVQALY   + G +  ++   +            V+    
Sbjct: 1   MTEKKEPVKKVSPRRRARECAVQALYSWALSGNAPEQVELTFV-----------VDQDLK 49

Query: 63  HVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVP 122
            VD  +F  +    +     +D  +S  L    +   LD I  +ILR  V EL     VP
Sbjct: 50  GVDKPYFSRLFRQTVANVDSVDFSMSHYLDR--TLDELDPIEKAILRLAVYELQFEPDVP 107

Query: 123 VEVIISEYVCIAHDFFYGDEPKFINAVLDKVS 154
            +V I+E + +A  F   +  K+IN VLDKV+
Sbjct: 108 YKVAINEAIEVAKVFGADESHKYINGVLDKVA 139


>gi|213427852|ref|ZP_03360602.1| transcription antitermination protein NusB [Salmonella enterica
           subsp. enterica serovar Typhi str. E02-1180]
          Length = 139

 Score =  167 bits (425), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 41/145 (28%), Positives = 67/145 (46%), Gaps = 14/145 (9%)

Query: 10  LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF 69
           +KL+  R  AR  AVQALY   +      ++  ++             E     VD+ +F
Sbjct: 1   MKLAA-RHRARECAVQALYSWQLSQNDIADVEYQFLA-----------EQDVKDVDVLYF 48

Query: 70  RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISE 129
           R ++ GV     ++D L+   L+       L  +  ++LR  + EL +   VP +V I+E
Sbjct: 49  RELLSGVATNSAYLDGLMKPYLSR--LLEELGQVEKAVLRIALFELSKRSDVPYKVAINE 106

Query: 130 YVCIAHDFFYGDEPKFINAVLDKVS 154
            + +A  F   D  KF+N VLDK +
Sbjct: 107 AIELAKTFGAEDSHKFVNGVLDKAA 131


>gi|304407046|ref|ZP_07388700.1| NusB antitermination factor [Paenibacillus curdlanolyticus YK9]
 gi|304344033|gb|EFM09873.1| NusB antitermination factor [Paenibacillus curdlanolyticus YK9]
          Length = 156

 Score =  167 bits (424), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 40/139 (28%), Positives = 66/139 (47%), Gaps = 1/139 (0%)

Query: 15  RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74
           +R +AR  AVQ+LYQ+++   +  E +          D E+            + R ++ 
Sbjct: 2   KRRLAREIAVQSLYQMEMNEVTAEEAVDMLMEEARQQDNEIGAHPAEAAKVNAFTRGLVF 61

Query: 75  GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134
           GV++RK  ID ++   LT  W   RL  +   ILR    E++    VP +  I+E + +A
Sbjct: 62  GVIERKTAIDQMLQQYLT-GWQVDRLSRVDRQILRLAAYEILFRDDVPPKAAINEAIELA 120

Query: 135 HDFFYGDEPKFINAVLDKV 153
             F   +  KF+N VL K+
Sbjct: 121 KHFGTDESGKFVNGVLGKL 139


>gi|154253354|ref|YP_001414178.1| NusB antitermination factor [Parvibaculum lavamentivorans DS-1]
 gi|154157304|gb|ABS64521.1| NusB antitermination factor [Parvibaculum lavamentivorans DS-1]
          Length = 171

 Score =  167 bits (424), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 58/150 (38%), Positives = 87/150 (58%), Gaps = 4/150 (2%)

Query: 21  LAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRK 80
           L AVQALYQ+DI      E++ E+  +R     E + ++     D   F  ++ GV+  +
Sbjct: 24  LFAVQALYQMDIAATPLDEVVEEFVEHRL---EEPEGDNEIFAADKVHFEDVVRGVVREQ 80

Query: 81  QHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYG 140
           + +D+ ++S L + WS +RLD  L +ILR G  EL  C  VP++V+I+EYV IAH FF G
Sbjct: 81  RELDVQVNSALAKGWSLARLDATLRAILRCGTYELRRCKDVPLKVVINEYVEIAHAFFEG 140

Query: 141 DEPKFINAVLDKVSRKEEIKRSGCVSAITQ 170
           DEP  +NAVLD++ R      SG     ++
Sbjct: 141 DEPGVVNAVLDRLGRDIRAG-SGIGHGSSE 169


>gi|217976846|ref|YP_002360993.1| NusB antitermination factor [Methylocella silvestris BL2]
 gi|217502222|gb|ACK49631.1| NusB antitermination factor [Methylocella silvestris BL2]
          Length = 154

 Score =  167 bits (424), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 59/156 (37%), Positives = 86/156 (55%), Gaps = 6/156 (3%)

Query: 10  LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF 69
           +  +  R  ARLAAVQALYQ+D+      E  +E+E++    + E     +Y   +L +F
Sbjct: 1   MSNADGRSAARLAAVQALYQMDVTDKGLKETCAEFESFWLGGEVEG---QLYKPAELAFF 57

Query: 70  RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISE 129
           + I+ GV+  +  ID  I   L E W   R+D +L +ILRAG  EL +   VP  V I E
Sbjct: 58  KDILSGVLADQGPIDRAIDQTLVEGWPLVRIDSVLRAILRAGAYELKKRTDVPARVAIKE 117

Query: 130 YVCIAHDFFYGDEPKFINAVLDKVSRK---EEIKRS 162
           YV +A  FF  +E   +NAVLD ++R+   EE +R 
Sbjct: 118 YVDVAGAFFEREESGMVNAVLDHLARRFRAEEFERP 153


>gi|26522749|dbj|BAC44853.1| NusB protein [Photobacterium phosphoreum]
          Length = 157

 Score =  167 bits (424), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 41/154 (26%), Positives = 73/154 (47%), Gaps = 6/154 (3%)

Query: 10  LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHV---DL 66
           +K + RR  AR  AVQA+Y   +   +  +I   + +     + E   ++        D+
Sbjct: 5   VKPAARRN-ARQFAVQAIYSWQLTKGNVADIEQYFLSGDKFEEEEHQADAPVCKAPDTDV 63

Query: 67  EWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVI 126
            +FR +  GV+   Q +D  +   L+       LD +  ++LR  + E+++   VP +V+
Sbjct: 64  SYFRDLFAGVVLSHQELDSKMRPYLSR--PLQDLDQMELALLRLAMYEMVKREDVPFKVV 121

Query: 127 ISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIK 160
           I+E + +A  F   D  KF+N VLDK +     K
Sbjct: 122 INEAIELAKLFGAEDSHKFVNGVLDKAAPSLRKK 155


>gi|296284343|ref|ZP_06862341.1| transcription termination factor [Citromicrobium bathyomarinum
           JL354]
          Length = 153

 Score =  167 bits (424), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 58/144 (40%), Positives = 80/144 (55%), Gaps = 3/144 (2%)

Query: 12  LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71
            S  R  ARLAAVQALYQ D+ G    +++ E+  +R   + E D    Y   ++ +F  
Sbjct: 7   RSTARSAARLAAVQALYQQDMEGTKLPKLLDEFHQHRLGREIEGD---TYADAEVPFFDD 63

Query: 72  IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
           I+ GV  R++ IDL +S  L + WS  RLD  +  +LR G  ELI    +P   +ISEYV
Sbjct: 64  IVRGVDARREEIDLQLSEKLAQGWSLKRLDKTMLQVLRCGTYELIARADIPTGAVISEYV 123

Query: 132 CIAHDFFYGDEPKFINAVLDKVSR 155
            +A  FF   E KF N VLD V++
Sbjct: 124 DVAKAFFDDREAKFANGVLDAVAK 147


>gi|90406964|ref|ZP_01215155.1| N utilization substance protein B [Psychromonas sp. CNPT3]
 gi|90312006|gb|EAS40100.1| N utilization substance protein B [Psychromonas sp. CNPT3]
          Length = 139

 Score =  167 bits (423), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 47/151 (31%), Positives = 79/151 (52%), Gaps = 14/151 (9%)

Query: 10  LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF 69
           +K + RR  AR  AVQA+YQ  I      +II ++            V+  +   D+ +F
Sbjct: 1   MKPAERRR-ARQFAVQAVYQWQITKGPVGQIIEQF-----------SVDQDFSKTDVPYF 48

Query: 70  RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISE 129
           + ++ GV+ R + ID  +S  L+ K     +DM+  +ILR  + EL     VP +V+++E
Sbjct: 49  KELLAGVVSRIETIDEKLSPYLSRK--IGDVDMVDIAILRLAMFELSYRTDVPHKVVLNE 106

Query: 130 YVCIAHDFFYGDEPKFINAVLDKVSRKEEIK 160
            + +A DF   +  KF+N VLDK  R  +++
Sbjct: 107 AIELAKDFATDESYKFVNGVLDKALRSLKLR 137


>gi|56461241|ref|YP_156522.1| transcription termination factor NusB [Idiomarina loihiensis L2TR]
 gi|81599971|sp|Q5QVE5|NUSB_IDILO RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|56180251|gb|AAV82973.1| Transcription termination factor NusB [Idiomarina loihiensis L2TR]
          Length = 139

 Score =  167 bits (423), Expect = 6e-40,   Method: Composition-based stats.
 Identities = 42/143 (29%), Positives = 69/143 (48%), Gaps = 14/143 (9%)

Query: 10  LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF 69
           +K + RR  AR  AVQA+Y   +   S ++I +++ T           E+    VD+++F
Sbjct: 1   MKPAARR-KARKLAVQAIYSWQLSQNSFSDIEAQFLT-----------ENDTSKVDVDYF 48

Query: 70  RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISE 129
             ++ GV    + +D  +   L        LD I  ++LR    EL E   VP +V I+E
Sbjct: 49  LELVRGVGGHYRTLDEALEPFLDR--PIKELDPIELAVLRLAAYELRERVDVPYKVAINE 106

Query: 130 YVCIAHDFFYGDEPKFINAVLDK 152
            + +A  F   +  +F+N VLDK
Sbjct: 107 AIELAKSFGADESHRFVNGVLDK 129


>gi|254417847|ref|ZP_05031571.1| transcription antitermination factor NusB [Brevundimonas sp. BAL3]
 gi|196184024|gb|EDX79000.1| transcription antitermination factor NusB [Brevundimonas sp. BAL3]
          Length = 174

 Score =  166 bits (422), Expect = 7e-40,   Method: Composition-based stats.
 Identities = 57/146 (39%), Positives = 83/146 (56%), Gaps = 3/146 (2%)

Query: 11  KLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFR 70
           K    R ++RLAAVQALYQ+++ G     +I+E+  +RF  D E +        D  +F 
Sbjct: 29  KQRRARTVSRLAAVQALYQMELAGEGVETVITEFANFRFDTDIEGEA---LAEADEAYFA 85

Query: 71  VIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEY 130
            I+ GV++ ++ ID  I + L   W   R+D  L ++LR+G  ELI+    P EV+I EY
Sbjct: 86  DIVRGVIESQRDIDTAIKARLASNWKLERIDATLRALLRSGAWELIKHPETPREVVIDEY 145

Query: 131 VCIAHDFFYGDEPKFINAVLDKVSRK 156
           V +A  FF   E +F+NA LD VSR 
Sbjct: 146 VELAKAFFDDSEARFVNAALDGVSRD 171


>gi|304320998|ref|YP_003854641.1| transcription antitermination protein NusB [Parvularcula
           bermudensis HTCC2503]
 gi|303299900|gb|ADM09499.1| transcription antitermination protein NusB [Parvularcula
           bermudensis HTCC2503]
          Length = 166

 Score =  166 bits (422), Expect = 7e-40,   Method: Composition-based stats.
 Identities = 56/169 (33%), Positives = 86/169 (50%), Gaps = 5/169 (2%)

Query: 1   MTIQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESV 60
           MT     +  +    + +ARL AVQALYQ++  G     +I E+  +R   + +    S 
Sbjct: 1   MTQIRQMQRPRSVEAKTMARLGAVQALYQMEHAGTGVEAVIREFVDHRLGGEMDG---SA 57

Query: 61  YLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHS 120
               D E+F  I+ GV++ ++ ID  I   L E W+  RLD    +ILRAG+ EL+    
Sbjct: 58  LHEADDEFFAAIVRGVVEGQRRIDPFIQRHLAEGWTLKRLDATARAILRAGLFELVSRPD 117

Query: 121 VPVEVIISEYVCIAHDFF--YGDEPKFINAVLDKVSRKEEIKRSGCVSA 167
           +P   ++ EYV +A+ FF     EP+FINAVLD  +++      G    
Sbjct: 118 IPWRTVVDEYVELANSFFEKGEAEPRFINAVLDATAKEVRADDFGQDGG 166


>gi|52425030|ref|YP_088167.1| transcription antitermination protein NusB [Mannheimia
           succiniciproducens MBEL55E]
 gi|81609560|sp|Q65TX8|NUSB_MANSM RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|52307082|gb|AAU37582.1| NusB protein [Mannheimia succiniciproducens MBEL55E]
          Length = 143

 Score =  166 bits (422), Expect = 8e-40,   Method: Composition-based stats.
 Identities = 46/154 (29%), Positives = 68/154 (44%), Gaps = 17/154 (11%)

Query: 1   MTIQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESV 60
           MT Q  K+       R  AR  AVQALY   I       +   + T           +  
Sbjct: 1   MTEQVKKRP----SPRRRARECAVQALYSFQISQNPVETVELSFVT-----------DQD 45

Query: 61  YLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHS 120
              VD+ +FR +    ++    +D  ++  L    S + LD I  +ILR  V EL     
Sbjct: 46  MKGVDMPYFRKLFRQTVENIPSVDSTMAPYLDR--SANELDPIEKAILRLAVYELKYELD 103

Query: 121 VPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVS 154
           VP +V+I+E + +A  F   D  K+IN VLDK++
Sbjct: 104 VPYKVVINEAIEVAKTFGAEDSHKYINGVLDKIA 137


>gi|240949529|ref|ZP_04753869.1| transcription antitermination protein NusB [Actinobacillus minor
           NM305]
 gi|257464994|ref|ZP_05629365.1| transcription antitermination protein NusB [Actinobacillus minor
           202]
 gi|240296102|gb|EER46763.1| transcription antitermination protein NusB [Actinobacillus minor
           NM305]
 gi|257450654|gb|EEV24697.1| transcription antitermination protein NusB [Actinobacillus minor
           202]
          Length = 144

 Score =  166 bits (422), Expect = 8e-40,   Method: Composition-based stats.
 Identities = 51/145 (35%), Positives = 68/145 (46%), Gaps = 7/145 (4%)

Query: 10  LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF 69
           +KL+ RR  AR  AVQALY   I   S  EI   + T  F A+ + D E     +D   F
Sbjct: 1   MKLTPRRR-ARECAVQALYSWAISQNSVEEIELVFHTDTFAAE-DPDTEG---KIDKALF 55

Query: 70  RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISE 129
             I  G +     ID  +   L        +D+I  SILR    EL      P +VII+E
Sbjct: 56  TRIFRGTVASIDEIDRSLQPFLDRN--PENVDLIERSILRMAAFELHFEQDTPYKVIINE 113

Query: 130 YVCIAHDFFYGDEPKFINAVLDKVS 154
            + +A  F   D  K+IN VLDK++
Sbjct: 114 AIEVAKAFGSDDSHKYINGVLDKLA 138


>gi|77464330|ref|YP_353834.1| NusB antitermination factor [Rhodobacter sphaeroides 2.4.1]
 gi|77388748|gb|ABA79933.1| NusB antitermination factor [Rhodobacter sphaeroides 2.4.1]
          Length = 155

 Score =  166 bits (421), Expect = 9e-40,   Method: Composition-based stats.
 Identities = 56/159 (35%), Positives = 92/159 (57%), Gaps = 10/159 (6%)

Query: 3   IQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYL 62
           ++ +++ +K       +RL AVQAL+Q++  G +  ++  E+ET+RF A  E D      
Sbjct: 1   MKPDRRQMK-----SASRLYAVQALFQMETTGQTVEQVAREFETHRFGAVYEGDE---MA 52

Query: 63  HVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVP 122
             D + FR I+ G ++R+  ID +    L  KW   R+D ++ ++ RA   EL+E    P
Sbjct: 53  EGDAKSFRAIVSGAVNRQAGIDQMTDRALVAKWPIDRIDPVIRALFRAAGSELLES-ETP 111

Query: 123 VEVIISEYVCIAHDFF-YGDEPKFINAVLDKVSRKEEIK 160
            +V+I+E+V IA  FF  G EPKF+NAVLD ++R+   +
Sbjct: 112 PKVVINEFVDIAKAFFPEGREPKFVNAVLDHMAREARPE 150


>gi|229847453|ref|ZP_04467550.1| transcription antitermination protein NusB [Haemophilus influenzae
           7P49H1]
 gi|229809594|gb|EEP45321.1| transcription antitermination protein NusB [Haemophilus influenzae
           7P49H1]
          Length = 144

 Score =  166 bits (421), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 48/154 (31%), Positives = 73/154 (47%), Gaps = 16/154 (10%)

Query: 1   MTIQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESV 60
           MT Q   K +K    R  AR   VQALY   + G +  ++        F  D ++D    
Sbjct: 1   MTEQ---KQVKKPSARRRARECTVQALYSWAVSGNTAEQV-----ELAFVLDQDMDG--- 49

Query: 61  YLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHS 120
              VD  +FR +    ++  + +D  IS  +    +F  LD I  +ILR  V EL     
Sbjct: 50  ---VDKPYFRKLFRQTIENIETVDFSISPYIDR--TFDELDPIETAILRLAVYELRFELD 104

Query: 121 VPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVS 154
           VP +V+I+E + +A  F   +  K+IN VLDK++
Sbjct: 105 VPYKVVINEAIEVAKVFGADESHKYINGVLDKIA 138


>gi|77361286|ref|YP_340861.1| transcription termination factor [Pseudoalteromonas haloplanktis
           TAC125]
 gi|119390799|sp|Q3II29|NUSB_PSEHT RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|76876197|emb|CAI87419.1| transcription termination factor [Pseudoalteromonas haloplanktis
           TAC125]
          Length = 136

 Score =  166 bits (421), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 45/146 (30%), Positives = 74/146 (50%), Gaps = 14/146 (9%)

Query: 10  LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF 69
           +K + RR  AR+ A+QA+Y   + G +  +I           + ++ +E+    +D+E+F
Sbjct: 1   MKPAARR-KARILALQAIYSWQLSGNAIADI-----------EQQMLIENDVTKIDVEYF 48

Query: 70  RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISE 129
           + +  GV    + +D  +S  LT    F  LDM+  +ILR    EL     VP +V I+E
Sbjct: 49  KDLASGVAVNYKQLDEAVSPHLTR--PFDELDMVERAILRLSSYELKFREDVPYKVAINE 106

Query: 130 YVCIAHDFFYGDEPKFINAVLDKVSR 155
            + +A  F   D  KF+N VLDK  +
Sbjct: 107 SIELAKMFGAEDSHKFVNGVLDKAVK 132


>gi|15602595|ref|NP_245667.1| transcription antitermination protein NusB [Pasteurella multocida
           subsp. multocida str. Pm70]
 gi|13431742|sp|P57868|NUSB_PASMU RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|12721025|gb|AAK02814.1| NusB [Pasteurella multocida subsp. multocida str. Pm70]
          Length = 144

 Score =  166 bits (421), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 51/154 (33%), Positives = 72/154 (46%), Gaps = 16/154 (10%)

Query: 1   MTIQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESV 60
           MT Q ++K  K+S RR  AR  AVQALY   +   S  EI   +             E  
Sbjct: 1   MTEQKHEK--KISPRRR-ARECAVQALYSWYVSQNSPAEIELNFMA-----------EQD 46

Query: 61  YLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHS 120
              VD  +FR +     +    +D ++   L  +   S LD I  +ILR  V EL     
Sbjct: 47  LKGVDTAYFRRLFRQTAENVDAVDNIMIPYLDRE--VSELDPIEKAILRLAVYELKFELD 104

Query: 121 VPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVS 154
           VP +V+I+E + +A  F   D  K++N VLDKV+
Sbjct: 105 VPYKVVINEAIEVAKVFGAEDSHKYVNGVLDKVA 138


>gi|298291642|ref|YP_003693581.1| NusB antitermination factor [Starkeya novella DSM 506]
 gi|296928153|gb|ADH88962.1| NusB antitermination factor [Starkeya novella DSM 506]
          Length = 160

 Score =  166 bits (420), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 53/158 (33%), Positives = 87/158 (55%), Gaps = 4/158 (2%)

Query: 1   MTIQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESV 60
           MT      + K   R+  ARL AVQALYQ+D+      +I++++E++    + E D    
Sbjct: 1   MTTGSKPANHKP-LRKSAARLNAVQALYQMDVAATPLADILAQFESHWIGHEIEGDE--- 56

Query: 61  YLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHS 120
               D+  FR I+ GV+  +  ID ++ + L + W   R++ +L ++LRAG  EL E   
Sbjct: 57  IASADVNLFRDIVGGVVREQLSIDPVLDAALVKGWPLKRIEAVLRAVLRAGAYELSERPD 116

Query: 121 VPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEE 158
           VP  V+++EYV +A  F   +E   +NAVLD ++R + 
Sbjct: 117 VPARVVVAEYVNVAAAFLDREETGMVNAVLDGLARDKR 154


>gi|209694495|ref|YP_002262423.1| transcription antitermination protein NusB [Aliivibrio salmonicida
           LFI1238]
 gi|238055348|sp|B6EIA0|NUSB_ALISL RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|208008446|emb|CAQ78611.1| N utilization substance protein B (protein NusB) [Aliivibrio
           salmonicida LFI1238]
          Length = 155

 Score =  166 bits (420), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 42/155 (27%), Positives = 70/155 (45%), Gaps = 6/155 (3%)

Query: 9   DLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHV---D 65
            +K + RR  AR  A+QA+Y   I   +   I  ++ T     + E   +   L     D
Sbjct: 4   SVKPAARRN-ARQFALQAIYSWQISKENVAAIEEQFLTADKYDEEEHHAKEPKLQAPETD 62

Query: 66  LEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEV 125
           + +FR +  GV      +D  +   L+       LD +  ++LR  + E++    VP +V
Sbjct: 63  VAYFRDLFSGVALNHIKLDGKMRPYLSR--PLQDLDQMELALLRMSIYEMMNRDDVPYKV 120

Query: 126 IISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIK 160
           +I+E + +A  F   D  KF+N VLDK +     K
Sbjct: 121 VINEAIELAKVFAAEDSHKFVNGVLDKAAPTLRKK 155


>gi|68249964|ref|YP_249076.1| transcription antitermination protein NusB [Haemophilus influenzae
           86-028NP]
 gi|81335612|sp|Q4QKN1|NUSB_HAEI8 RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|68058163|gb|AAX88416.1| N utilization substance protein B [Haemophilus influenzae 86-028NP]
          Length = 144

 Score =  166 bits (420), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 48/154 (31%), Positives = 73/154 (47%), Gaps = 16/154 (10%)

Query: 1   MTIQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESV 60
           MT Q   K +K    R  AR   VQALY   + G +  ++        F  D ++D    
Sbjct: 1   MTEQ---KQVKKPSARRRARECTVQALYSWAVSGNTAEQV-----ELAFVLDQDMDG--- 49

Query: 61  YLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHS 120
              VD  +FR +    ++  + +D  IS  +    +F  LD I  +ILR  V EL     
Sbjct: 50  ---VDKPYFRKLFRQTVENIETVDFSISPYIDR--AFDELDPIETAILRLAVYELCFELD 104

Query: 121 VPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVS 154
           VP +V+I+E + +A  F   +  K+IN VLDK++
Sbjct: 105 VPYKVVINEAIEVAKVFGADESHKYINGVLDKIA 138


>gi|315499922|ref|YP_004088725.1| nusb antitermination factor [Asticcacaulis excentricus CB 48]
 gi|315417934|gb|ADU14574.1| NusB antitermination factor [Asticcacaulis excentricus CB 48]
          Length = 177

 Score =  166 bits (420), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 55/157 (35%), Positives = 82/157 (52%), Gaps = 2/157 (1%)

Query: 4   QDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELD--VESVY 61
           +  +  LK    R +ARL  VQALYQ++I G     +I E+  +RF  + E +   E   
Sbjct: 21  ESGRLSLKEKRARTVARLVLVQALYQMEIAGTGVESVIREFADFRFDGNIEGECGEEQRL 80

Query: 62  LHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSV 121
              D  +F   +  ++  +  ID+LI+  L   W   R+D  L +ILRAG  EL     V
Sbjct: 81  GTADEAFFADGLRTIVKAQAEIDVLIAERLASNWRLDRIDTTLRAILRAGAWELKFRPDV 140

Query: 122 PVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEE 158
            VEV+I+EYV IA  FF  +E +F+N  LD +++   
Sbjct: 141 AVEVVINEYVEIAKAFFGNEEARFVNGALDGIAKDAR 177


>gi|145636230|ref|ZP_01791900.1| transcription antitermination protein NusB [Haemophilus influenzae
           PittHH]
 gi|145641684|ref|ZP_01797261.1| transcription antitermination protein NusB [Haemophilus influenzae
           R3021]
 gi|145270752|gb|EDK10685.1| transcription antitermination protein NusB [Haemophilus influenzae
           PittHH]
 gi|145273731|gb|EDK13600.1| transcription antitermination protein NusB [Haemophilus influenzae
           22.4-21]
          Length = 144

 Score =  166 bits (420), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 48/154 (31%), Positives = 73/154 (47%), Gaps = 16/154 (10%)

Query: 1   MTIQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESV 60
           MT Q   K +K    R  AR   VQALY   + G +  ++        F  D ++D    
Sbjct: 1   MTEQ---KQVKKPSARRRARECTVQALYSWAVSGNTAEQV-----ELAFVLDQDMDG--- 49

Query: 61  YLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHS 120
              VD  +FR +    ++  + +D  IS  +    +F  LD I  +ILR  V EL     
Sbjct: 50  ---VDKPYFRKLFRQTIENIETVDFSISPYIDR--TFDELDPIETAILRLAVYELHFELD 104

Query: 121 VPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVS 154
           VP +V+I+E + +A  F   +  K+IN VLDK++
Sbjct: 105 VPYKVVINEAIEVAKVFGADESHKYINGVLDKIA 138


>gi|315125804|ref|YP_004067807.1| transcription termination factor [Pseudoalteromonas sp. SM9913]
 gi|315014318|gb|ADT67656.1| transcription termination factor [Pseudoalteromonas sp. SM9913]
          Length = 137

 Score =  166 bits (420), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 44/147 (29%), Positives = 74/147 (50%), Gaps = 14/147 (9%)

Query: 10  LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF 69
           +K + RR  AR+ A+QA+Y   + G +  +I           + ++ +E+    +D+E+F
Sbjct: 1   MKPAARR-KARILALQAVYSWQLSGNAIADI-----------EQQMLIENDVTKIDVEYF 48

Query: 70  RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISE 129
           + +  GV    + +D  +S  LT    F  LD +  +ILR    EL     VP +V I+E
Sbjct: 49  KDLARGVAVNHKQLDEAVSPHLTR--PFDELDEVERAILRLSSYELKFREDVPYKVAINE 106

Query: 130 YVCIAHDFFYGDEPKFINAVLDKVSRK 156
            + +A  F   D  KF+N VLDK  ++
Sbjct: 107 SIELAKMFGAEDSHKFVNGVLDKAVKQ 133


>gi|188582598|ref|YP_001926043.1| NusB antitermination factor [Methylobacterium populi BJ001]
 gi|179346096|gb|ACB81508.1| NusB antitermination factor [Methylobacterium populi BJ001]
          Length = 172

 Score =  165 bits (419), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 53/159 (33%), Positives = 89/159 (55%), Gaps = 3/159 (1%)

Query: 12  LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71
             + R  ARLA VQALY+++I      + ++E+E +    + +     V+   +  +FR 
Sbjct: 16  KPNTRTGARLAVVQALYEMEISDKGVIDALAEFEAFWIGQEIDG---VVHPPAETAFFRD 72

Query: 72  IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
           ++ G ++ ++ ID  + + L + W   RL+++L +ILRAG  EL+    VP    IS+YV
Sbjct: 73  VLRGAVEEQRAIDPKLDAALAKGWPLRRLEVVLRAILRAGAYELMFRRDVPARAAISQYV 132

Query: 132 CIAHDFFYGDEPKFINAVLDKVSRKEEIKRSGCVSAITQ 170
            +AH F+ GDEP  +NAVLD+V R+      G  +A  +
Sbjct: 133 DVAHSFYGGDEPGMVNAVLDRVGREVRSTEFGIPAAPKK 171


>gi|148826048|ref|YP_001290801.1| transcription antitermination protein NusB [Haemophilus influenzae
           PittEE]
 gi|166215690|sp|A5UCB7|NUSB_HAEIE RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|148716208|gb|ABQ98418.1| transcription antitermination protein NusB [Haemophilus influenzae
           PittEE]
 gi|309973183|gb|ADO96384.1| Transcription antitermination protein NusB [Haemophilus influenzae
           R2846]
          Length = 144

 Score =  165 bits (419), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 48/154 (31%), Positives = 73/154 (47%), Gaps = 16/154 (10%)

Query: 1   MTIQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESV 60
           MT Q   K +K    R  AR   VQALY   + G +  ++        F  D ++D    
Sbjct: 1   MTEQ---KQVKKPSARRRARECTVQALYSWAVSGNTAEQV-----ELAFVLDQDMDG--- 49

Query: 61  YLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHS 120
              VD  +FR +    ++  + +D  IS  +    +F  LD I  +ILR  V EL     
Sbjct: 50  ---VDKPYFRKLFRQTIENIETVDFSISPYIDR--TFDELDPIETAILRLAVYELRFELD 104

Query: 121 VPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVS 154
           VP +V+I+E + +A  F   +  K+IN VLDK++
Sbjct: 105 VPYKVVINEAIEVAKVFGADESHKYINGVLDKIA 138


>gi|322515009|ref|ZP_08068019.1| transcription antitermination factor NusB [Actinobacillus ureae
           ATCC 25976]
 gi|322118998|gb|EFX91170.1| transcription antitermination factor NusB [Actinobacillus ureae
           ATCC 25976]
          Length = 163

 Score =  165 bits (419), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 47/151 (31%), Positives = 71/151 (47%), Gaps = 15/151 (9%)

Query: 5   DNKKD-LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLH 63
           D ++  +K+S RR  AR  AVQALY   +   S  E+   + T           +     
Sbjct: 21  DKRRGFMKVSPRRR-ARECAVQALYSWYVSQNSVEEVELSFVT-----------DQDMNG 68

Query: 64  VDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPV 123
           VDL +FR ++   +   + ID  +   L        +D I  +ILR    EL     VP 
Sbjct: 69  VDLPYFRKLLRSTVLYIEAIDGALRPFLDRAE--DEVDPIERTILRLSAYELKYELDVPY 126

Query: 124 EVIISEYVCIAHDFFYGDEPKFINAVLDKVS 154
           +V+I+E + +A  F  GD  K+IN VLDK++
Sbjct: 127 KVVINEGIEVAKVFGSGDSHKYINGVLDKLA 157


>gi|156973480|ref|YP_001444387.1| transcription antitermination protein NusB [Vibrio harveyi ATCC
           BAA-1116]
 gi|269962347|ref|ZP_06176697.1| N utilization substance protein B [Vibrio harveyi 1DA3]
 gi|166215728|sp|A7MWU1|NUSB_VIBHB RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|156525074|gb|ABU70160.1| hypothetical protein VIBHAR_01170 [Vibrio harveyi ATCC BAA-1116]
 gi|269832843|gb|EEZ86952.1| N utilization substance protein B [Vibrio harveyi 1DA3]
          Length = 155

 Score =  165 bits (419), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 42/155 (27%), Positives = 72/155 (46%), Gaps = 6/155 (3%)

Query: 9   DLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTEL---DVESVYLHVD 65
            +K + RR  AR  A+QA+Y   I   +   I  ++ +     + EL   +        D
Sbjct: 4   SVKPAARRN-ARQFALQAIYSWQITKDNVATIEEQFLSGDKYDEEELHASEPALAAPETD 62

Query: 66  LEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEV 125
           + +FR ++ GV+     +D  I   ++       LDM+  ++LR  + E+     VP +V
Sbjct: 63  VAYFRELLSGVVLSHSELDSKIRPYVSR--PMQDLDMMELALLRLAMYEMTRREDVPYKV 120

Query: 126 IISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIK 160
           +I+E + +A  F   D  KF+N VLDK +     K
Sbjct: 121 VINEAIELAKVFAAEDSHKFVNGVLDKAAPHVRKK 155


>gi|152979151|ref|YP_001344780.1| transcription antitermination protein NusB [Actinobacillus
           succinogenes 130Z]
 gi|171704320|sp|A6VPE8|NUSB_ACTSZ RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|150840874|gb|ABR74845.1| NusB antitermination factor [Actinobacillus succinogenes 130Z]
          Length = 142

 Score =  165 bits (419), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 45/148 (30%), Positives = 67/148 (45%), Gaps = 14/148 (9%)

Query: 7   KKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDL 66
           ++  K+S RR  AR  AVQALY   +     TEI   + T           E     VD 
Sbjct: 3   EQKKKVSPRRR-ARECAVQALYSWAVSNNDATEIELSFIT-----------EQDMKGVDT 50

Query: 67  EWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVI 126
            +FR +    +   + +D+ I+  L    +   L  I  ++LR    EL     VP +V 
Sbjct: 51  PYFRKLFRNTVTYLESVDVTIAPFLDR--TSEELTPIEKAVLRLATYELKYEPDVPYKVA 108

Query: 127 ISEYVCIAHDFFYGDEPKFINAVLDKVS 154
           I+E + +A  F   D  K+IN VLDK++
Sbjct: 109 INEAIELAKTFGAEDSHKYINGVLDKIA 136


>gi|126738747|ref|ZP_01754443.1| transcription antitermination factor NusB [Roseobacter sp.
           SK209-2-6]
 gi|126719928|gb|EBA16635.1| transcription antitermination factor NusB [Roseobacter sp.
           SK209-2-6]
          Length = 160

 Score =  165 bits (418), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 54/164 (32%), Positives = 88/164 (53%), Gaps = 10/164 (6%)

Query: 1   MTIQDNKKDLKLSHRR---GIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDV 57
           MT   +    K S +R     +RL AVQAL+Q++  G +  +II E+E +RF A  + D 
Sbjct: 1   MTQSGSAP--KGSGKRQMKSASRLYAVQALFQMEQSGQTFDQIIVEFEDHRFGAVYDGDE 58

Query: 58  ESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIE 117
                  D + FR ++   ++ +  +D +    L  KW  +R+D  L ++ RA   EL +
Sbjct: 59  ---MAEGDTKLFRKLVEDAVNYQAPVDQMTDRALVAKWPIARIDPTLRALFRAAGAELTQ 115

Query: 118 CHSVPVEVIISEYVCIAHDFF-YGDEPKFINAVLDKVSRKEEIK 160
               P +V+I+E+V IA  FF  G E KF+N VLD ++R+ + +
Sbjct: 116 S-ETPPKVVINEFVDIARAFFPEGKESKFVNGVLDHMAREAKPE 158


>gi|167470223|ref|ZP_02334927.1| transcription antitermination factor NusB [Yersinia pestis FV-1]
          Length = 137

 Score =  165 bits (418), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 39/136 (28%), Positives = 66/136 (48%), Gaps = 13/136 (9%)

Query: 19  ARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMD 78
           AR  AVQALY   +      ++  ++ + +   D           VD+ +FR ++ GV  
Sbjct: 8   ARECAVQALYSWQLSKNDIADVELQFLSEQDVKD-----------VDIAYFRELLSGVAV 56

Query: 79  RKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFF 138
               +D L++  L+ +     L  +  ++LR  + EL +   VP +V I+E + +A  F 
Sbjct: 57  NAASLDALMAPFLSRQ--LEELGQVERAVLRIALFELSKRDDVPYKVAINEAIELAKTFG 114

Query: 139 YGDEPKFINAVLDKVS 154
             D  KF+N VLDKV+
Sbjct: 115 AEDSHKFVNGVLDKVA 130


>gi|170717533|ref|YP_001784622.1| transcription antitermination protein NusB [Haemophilus somnus
           2336]
 gi|189035891|sp|B0UU23|NUSB_HAES2 RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|168825662|gb|ACA31033.1| NusB antitermination factor [Haemophilus somnus 2336]
          Length = 144

 Score =  165 bits (418), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 50/155 (32%), Positives = 74/155 (47%), Gaps = 12/155 (7%)

Query: 6   NKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVD 65
            +K  K+S RR  AR  AVQ LY   I   S  EI   +          +D ++    VD
Sbjct: 2   TEKVKKISPRRR-ARECAVQNLYSWAISKNSPEEIELNFI---------VDQDNEMKGVD 51

Query: 66  LEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEV 125
           + +FR + H  ++  + ID  ++  L        LD I C+ILR  V EL     VP +V
Sbjct: 52  MPYFRKLFHQTINHVETIDSTMAPYLDRDNV--ELDPIECAILRLAVYELKFELDVPYKV 109

Query: 126 IISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIK 160
           +I+E + +A  F   +  K+IN VLDK++     K
Sbjct: 110 VINEAIEVAKVFGAEESHKYINGVLDKIAPALSRK 144


>gi|291326906|ref|ZP_06126293.2| transcription antitermination factor NusB [Providencia rettgeri DSM
           1131]
 gi|291312467|gb|EFE52920.1| transcription antitermination factor NusB [Providencia rettgeri DSM
           1131]
          Length = 149

 Score =  165 bits (418), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 40/141 (28%), Positives = 63/141 (44%), Gaps = 13/141 (9%)

Query: 21  LAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRK 80
             AVQA+Y   + G    E+  E+             E     VD+ +FR ++ GV    
Sbjct: 22  ECAVQAIYSWQLSGNPIAEVEYEFIA-----------EQDMSDVDVNYFRELLSGVATNA 70

Query: 81  QHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYG 140
             +D L++  L+ +     L  +  +ILR  + EL     VP +V I+E + +A  F   
Sbjct: 71  TKLDQLMAPYLSRQ--LEELGQVEKAILRVSMFELSFREDVPYKVAINEGIELAKVFGAE 128

Query: 141 DEPKFINAVLDKVSRKEEIKR 161
           D  KF+N VLDK +     K+
Sbjct: 129 DSHKFVNGVLDKAAPAVRRKK 149


>gi|328472533|gb|EGF43396.1| transcription antitermination protein NusB [Vibrio parahaemolyticus
           10329]
          Length = 151

 Score =  165 bits (418), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 43/154 (27%), Positives = 72/154 (46%), Gaps = 6/154 (3%)

Query: 10  LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHV---DL 66
           +K + RR  AR  A+QA+Y   I   +   I  ++ +     + EL      L     D+
Sbjct: 1   MKPAARRN-ARQFALQAIYSWQITKENVATIEEQFLSGDKYDEEELRASEPALAAPETDV 59

Query: 67  EWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVI 126
            +FR ++ GV+     +D  I   ++       LDM+  ++LR  + E+     VP +V+
Sbjct: 60  AYFRELLSGVVLSHAELDSKIRPYVSR--PMQDLDMMELALLRLAMYEMTRREDVPYKVV 117

Query: 127 ISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIK 160
           I+E + +A  F   D  KF+N VLDK +     K
Sbjct: 118 INEAIELAKVFAAEDSHKFVNGVLDKAAPHVRKK 151


>gi|254360609|ref|ZP_04976758.1| N utilization substance B [Mannheimia haemolytica PHL213]
 gi|261493373|ref|ZP_05989899.1| N utilization substance B [Mannheimia haemolytica serotype A2 str.
           BOVINE]
 gi|261496639|ref|ZP_05993019.1| N utilization substance B [Mannheimia haemolytica serotype A2 str.
           OVINE]
 gi|153091149|gb|EDN73154.1| N utilization substance B [Mannheimia haemolytica PHL213]
 gi|261307842|gb|EEY09165.1| N utilization substance B [Mannheimia haemolytica serotype A2 str.
           OVINE]
 gi|261311017|gb|EEY12194.1| N utilization substance B [Mannheimia haemolytica serotype A2 str.
           BOVINE]
          Length = 137

 Score =  165 bits (418), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 49/145 (33%), Positives = 71/145 (48%), Gaps = 14/145 (9%)

Query: 10  LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF 69
           +K+S RR  AR  AVQA+Y   I   +  E+   + T           +     VD+ +F
Sbjct: 1   MKISPRRR-ARECAVQAIYSWYISQNTVEEVELAFVT-----------DQDMKGVDMPYF 48

Query: 70  RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISE 129
           R +  GV+D  + ID  +   L  K S   +D I  SILR    EL   H VP  V+I+E
Sbjct: 49  RKLFRGVVDNVEAIDEALRPYLDRKES--DVDPIERSILRLSTYELKFEHDVPFRVVINE 106

Query: 130 YVCIAHDFFYGDEPKFINAVLDKVS 154
            + +A  F   D  K+IN +LDK++
Sbjct: 107 GIEVAKVFGSDDSHKYINGILDKLA 131


>gi|256821700|ref|YP_003145663.1| NusB antitermination factor [Kangiella koreensis DSM 16069]
 gi|256795239|gb|ACV25895.1| NusB antitermination factor [Kangiella koreensis DSM 16069]
          Length = 142

 Score =  165 bits (418), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 44/151 (29%), Positives = 69/151 (45%), Gaps = 14/151 (9%)

Query: 11  KLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFR 70
           K + RR  AR  A+QA+YQ  +      EI ++Y T                 VD  +F+
Sbjct: 6   KPAMRRR-AREYAMQAIYQWQMSDNPLNEIEAQYLTTMNAK-----------KVDTVYFQ 53

Query: 71  VIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEY 130
            +  GV+     ID  ++  L  +     +D I  +I+R    EL +   VP +V+I+E 
Sbjct: 54  ELFSGVLTNLDEIDEALAPALERE--IEGIDPIERAIIRLSAFELKKRVDVPKKVVINEG 111

Query: 131 VCIAHDFFYGDEPKFINAVLDKVSRKEEIKR 161
           + +A  F   D  KF+N VLDK+S+      
Sbjct: 112 IELAKTFGATDGHKFVNGVLDKISKALRPHE 142


>gi|260575720|ref|ZP_05843717.1| NusB antitermination factor [Rhodobacter sp. SW2]
 gi|259022118|gb|EEW25417.1| NusB antitermination factor [Rhodobacter sp. SW2]
          Length = 157

 Score =  165 bits (418), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 55/161 (34%), Positives = 90/161 (55%), Gaps = 7/161 (4%)

Query: 1   MTIQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESV 60
           M+ +  K D K    +  ARL AVQAL+Q+++ G +   +  E+ET+RF A  + D    
Sbjct: 1   MSDKVPKPDKK--QMKSAARLYAVQALFQMEVSGQTVEAVQREFETHRFGAVYDGDE--- 55

Query: 61  YLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHS 120
               D+  FR ++   ++ +  ID L    L  KW  SR+D +L ++ RA   E++E   
Sbjct: 56  MAEGDVVHFRALVGHAVNWQAKIDQLTDRALVAKWPISRIDPVLRALFRAAGAEMLEMP- 114

Query: 121 VPVEVIISEYVCIAHDFF-YGDEPKFINAVLDKVSRKEEIK 160
            P +V+I+E+V +A  FF  G E  F+NAVLD ++R+ + +
Sbjct: 115 TPPKVVITEFVDVAKAFFPEGKEASFVNAVLDHMAREAKPE 155


>gi|30250477|ref|NP_842547.1| antitermination protein NusB [Nitrosomonas europaea ATCC 19718]
 gi|39931886|sp|Q82S07|NUSB_NITEU RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|30139318|emb|CAD86470.1| Antitermination protein NusB [Nitrosomonas europaea ATCC 19718]
          Length = 167

 Score =  164 bits (417), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 37/166 (22%), Positives = 71/166 (42%), Gaps = 20/166 (12%)

Query: 1   MTIQDNKKDLKL-------SHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADT 53
           M   +    +K         +RR ++R  A+Q +YQ  + G +  +I  + +   F    
Sbjct: 1   MMSTETVPPVKRVQGHKGYKNRRRLSRELALQGIYQWQVTGGNARDIGMQLQQVSF---- 56

Query: 54  ELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVL 113
                  +   D  +F  ++ GV++    +   I   L  +   + L  + CSIL  G  
Sbjct: 57  -------FSKADGPYFSDLLQGVLEHAADLQTQIQPHLDRQ--IAELSPVECSILLIGTY 107

Query: 114 ELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEI 159
           E++    +P   II+E + +A  +   D  K++N VLDK++ +   
Sbjct: 108 EMVYRPEIPCRAIINEAIELAKSYGGTDGHKYVNGVLDKLATRLRA 153


>gi|332534974|ref|ZP_08410792.1| transcription termination protein NusB [Pseudoalteromonas
           haloplanktis ANT/505]
 gi|332035592|gb|EGI72084.1| transcription termination protein NusB [Pseudoalteromonas
           haloplanktis ANT/505]
          Length = 136

 Score =  164 bits (417), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 46/146 (31%), Positives = 73/146 (50%), Gaps = 14/146 (9%)

Query: 10  LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF 69
           +K + RR  AR+ A+QA+Y   I G    +I           + ++ +E+    +D+E+F
Sbjct: 1   MKPAARR-KARILALQAVYSWQISGNLIADI-----------EQQMLIETDVTKIDVEYF 48

Query: 70  RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISE 129
           + +  GV    + +D  +S  LT    F  LDM+  +ILR    EL     VP +V I+E
Sbjct: 49  KDLATGVAVNYKQLDEAVSPHLTR--PFDDLDMVERAILRLSSYELKFREDVPYKVAINE 106

Query: 130 YVCIAHDFFYGDEPKFINAVLDKVSR 155
            + +A  F   D  KF+N VLDK  +
Sbjct: 107 GIELAKIFGAEDSHKFVNGVLDKAVK 132


>gi|103487508|ref|YP_617069.1| NusB antitermination factor [Sphingopyxis alaskensis RB2256]
 gi|119390826|sp|Q1GRI6|NUSB_SPHAL RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|98977585|gb|ABF53736.1| NusB antitermination factor [Sphingopyxis alaskensis RB2256]
          Length = 149

 Score =  164 bits (417), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 58/150 (38%), Positives = 82/150 (54%), Gaps = 3/150 (2%)

Query: 11  KLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFR 70
           K +  R  ARLAAVQALYQ ++      ++I E+  +R  A  E   ++ Y   D+ +F 
Sbjct: 3   KRAQSRSAARLAAVQALYQHEMEATPVAQLIHEFHQHRIGAIIE---DAEYADADVPFFD 59

Query: 71  VIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEY 130
            I+ GV+ R   ID  I++ L   W+  RLD  + +ILRAG  ELI    VPV  ++SEY
Sbjct: 60  DIVKGVLARADEIDAAITARLASGWTMERLDRTMKAILRAGTYELIARGDVPVGAVVSEY 119

Query: 131 VCIAHDFFYGDEPKFINAVLDKVSRKEEIK 160
           V +A  FF G E  F N +LD + +    K
Sbjct: 120 VDVAKAFFDGREAGFANGLLDAIGKDVRKK 149


>gi|145634912|ref|ZP_01790619.1| transcription antitermination protein NusB [Haemophilus influenzae
           PittAA]
 gi|229845118|ref|ZP_04465253.1| transcription antitermination protein NusB [Haemophilus influenzae
           6P18H1]
 gi|145267778|gb|EDK07775.1| transcription antitermination protein NusB [Haemophilus influenzae
           PittAA]
 gi|229811954|gb|EEP47648.1| transcription antitermination protein NusB [Haemophilus influenzae
           6P18H1]
          Length = 144

 Score =  164 bits (416), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 48/154 (31%), Positives = 72/154 (46%), Gaps = 16/154 (10%)

Query: 1   MTIQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESV 60
           MT Q   K +K    R  AR   VQALY   + G +  ++        F  D ++D    
Sbjct: 1   MTEQ---KQVKKPSARRRARECTVQALYSWAVSGNTVEQV-----ELAFVLDQDMDG--- 49

Query: 61  YLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHS 120
              VD  +FR +    ++  + +D  IS       +F  LD I  +ILR  V EL     
Sbjct: 50  ---VDKPYFRKLFRQTVENIETVDFSISPYTDR--AFDELDPIETAILRLAVYELRFELD 104

Query: 121 VPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVS 154
           VP +V+I+E + +A  F   +  K+IN VLDK++
Sbjct: 105 VPYKVVINEAIEVAKVFGADESHKYINGVLDKIA 138


>gi|254511391|ref|ZP_05123458.1| transcription antitermination factor NusB [Rhodobacteraceae
           bacterium KLH11]
 gi|221535102|gb|EEE38090.1| transcription antitermination factor NusB [Rhodobacteraceae
           bacterium KLH11]
          Length = 160

 Score =  164 bits (416), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 55/162 (33%), Positives = 89/162 (54%), Gaps = 6/162 (3%)

Query: 1   MTIQDNKKDLK-LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVES 59
           MT  D  K        +  ARL AVQAL+Q++  G +T  +++E+  +RF A  E +   
Sbjct: 1   MTKTDAPKPANQKRQMKSAARLYAVQALFQMEQSGQTTEAVVTEFLDHRFGAVYEGEE-- 58

Query: 60  VYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECH 119
             L  D+  FR ++   ++ +  ID +    L  KW  +R+D  L ++ RA   EL +  
Sbjct: 59  -MLDGDISVFRALVDNAVNYQAPIDQMTDRALVAKWPIARIDPTLRAVFRAAGAELTQS- 116

Query: 120 SVPVEVIISEYVCIAHDFF-YGDEPKFINAVLDKVSRKEEIK 160
             P +V+I+E+V +A  FF  G EPKF+NAVLD ++R+ + +
Sbjct: 117 DTPPKVVITEFVDVARAFFPEGKEPKFVNAVLDHMAREAQPE 158


>gi|308048552|ref|YP_003912118.1| NusB antitermination factor [Ferrimonas balearica DSM 9799]
 gi|307630742|gb|ADN75044.1| NusB antitermination factor [Ferrimonas balearica DSM 9799]
          Length = 136

 Score =  164 bits (416), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 44/145 (30%), Positives = 71/145 (48%), Gaps = 14/145 (9%)

Query: 10  LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF 69
           +K S RR  AR  AVQA+Y   + G +  +I  E+ T           E      DL +F
Sbjct: 1   MKPSERR-KARRLAVQAIYSWQMSGNAVADIEHEFLT-----------EQDTKGADLGYF 48

Query: 70  RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISE 129
           R ++ GV+ +  ++D  +   L        +D +  +ILR    EL+    VP +V+I+E
Sbjct: 49  RELLVGVVSQSSNLDARLKPNLAR--LVEEVDQLELAILRLAAFELLHRDDVPYKVVINE 106

Query: 130 YVCIAHDFFYGDEPKFINAVLDKVS 154
            + +A  F   +  KF+N VLDK++
Sbjct: 107 AIELAKAFGAEESHKFVNGVLDKLA 131


>gi|85711195|ref|ZP_01042255.1| Transcription termination factor NusB [Idiomarina baltica OS145]
 gi|85695108|gb|EAQ33046.1| Transcription termination factor NusB [Idiomarina baltica OS145]
          Length = 139

 Score =  164 bits (416), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 44/153 (28%), Positives = 72/153 (47%), Gaps = 14/153 (9%)

Query: 10  LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF 69
           +K + RR  AR  AVQA+Y   +   +  EI +++ T           ++    VD+++F
Sbjct: 1   MKPAARR-KARKLAVQAVYSWQLSQNTFNEIEAQFLT-----------DNDTSKVDVDYF 48

Query: 70  RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISE 129
             ++ GV    + +D  I+  L      S LD +  ++LR    EL E + VP +V I+E
Sbjct: 49  LELLRGVGAFYKSLDEAIAPYLDR--PISELDPVELAVLRIAAYELRERYDVPYKVAINE 106

Query: 130 YVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRS 162
            + +A  F   D  +F+N VLDK        R 
Sbjct: 107 AIELAKSFGADDSHRFVNGVLDKAVDALRPARQ 139


>gi|71279330|ref|YP_268274.1| transcription termination/antitermination factor NusB [Colwellia
           psychrerythraea 34H]
 gi|119390761|sp|Q485J1|NUSB_COLP3 RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|71145070|gb|AAZ25543.1| transcription termination/antitermination factor NusB [Colwellia
           psychrerythraea 34H]
          Length = 138

 Score =  164 bits (416), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 43/146 (29%), Positives = 67/146 (45%), Gaps = 14/146 (9%)

Query: 10  LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF 69
           +K S RR  AR  AVQA+Y   +      +I   +             ++     D+E+F
Sbjct: 1   MKPSPRR-KARELAVQAVYSWQVSKNPVNDIEVNFIA-----------DNSKRRFDIEYF 48

Query: 70  RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISE 129
           ++++ GV      ID  I   +        +D +  +ILR  V EL +C  VP  V+I+E
Sbjct: 49  QLLLRGVTTNIGSIDEAIIPYVDR--PLDDIDQVEKAILRVAVFELKDCTDVPYRVVINE 106

Query: 130 YVCIAHDFFYGDEPKFINAVLDKVSR 155
            + +A  F   D  KF+N VLDK  +
Sbjct: 107 AIELAKSFAADDSHKFVNGVLDKTVK 132


>gi|294635301|ref|ZP_06713799.1| transcription antitermination factor NusB [Edwardsiella tarda ATCC
           23685]
 gi|291091310|gb|EFE23871.1| transcription antitermination factor NusB [Edwardsiella tarda ATCC
           23685]
          Length = 139

 Score =  164 bits (416), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 40/142 (28%), Positives = 66/142 (46%), Gaps = 13/142 (9%)

Query: 21  LAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRK 80
             AVQALY   I      ++  ++ +           E     VD+ +FR ++ GV    
Sbjct: 11  ECAVQALYSWQISKNDIADVEYQFLS-----------EQDVKDVDVNYFRELLSGVASNA 59

Query: 81  QHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYG 140
            ++D L++  L+ +     L  +  +ILR  + EL +   VP +V I+E V +A  F   
Sbjct: 60  DYLDGLMAPVLSRQ--LDELGQVEKAILRVSIYELSKRQDVPYKVAINEGVELAKTFGAE 117

Query: 141 DEPKFINAVLDKVSRKEEIKRS 162
           D  KF+N VLDK++ +    R 
Sbjct: 118 DSHKFVNGVLDKIAPQVRPNRK 139


>gi|170744825|ref|YP_001773480.1| NusB antitermination factor [Methylobacterium sp. 4-46]
 gi|168199099|gb|ACA21046.1| NusB antitermination factor [Methylobacterium sp. 4-46]
          Length = 156

 Score =  164 bits (416), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 55/152 (36%), Positives = 87/152 (57%), Gaps = 4/152 (2%)

Query: 10  LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF 69
           +K +  R  ARLA VQALY+++I G    + ++E+E +      +      +   +  +F
Sbjct: 1   MKPAE-RSGARLAVVQALYEMEISGKGVIDALAEFEAFWIGQVVDGIE---HPPAETAFF 56

Query: 70  RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISE 129
           R ++ G ++ ++ ID  +   L+  W   R++ +L +ILRAG  E+I    VPV V ISE
Sbjct: 57  RDVLRGAVEEQRLIDQRLDGALSAGWPLRRIEAVLRAILRAGAYEVIFRKDVPVRVAISE 116

Query: 130 YVCIAHDFFYGDEPKFINAVLDKVSRKEEIKR 161
           YV +AH F+ GDEP  +NAVLDKV+R    + 
Sbjct: 117 YVDVAHSFYGGDEPGLVNAVLDKVARAARAEE 148


>gi|307825577|ref|ZP_07655795.1| NusB antitermination factor [Methylobacter tundripaludum SV96]
 gi|307733463|gb|EFO04322.1| NusB antitermination factor [Methylobacter tundripaludum SV96]
          Length = 144

 Score =  164 bits (416), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 47/156 (30%), Positives = 74/156 (47%), Gaps = 16/156 (10%)

Query: 12  LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71
           +S  R  AR AAVQALYQ  + G + +EI  ++             E         +F  
Sbjct: 1   MSQARTNARKAAVQALYQWQMAGQNLSEIERQFLE-----------EERLKDAQKSYFVE 49

Query: 72  IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
           + +GV      ID ++S  +        +D +  +ILR GV EL+   ++P  V+++E +
Sbjct: 50  LFYGVPKNLDAIDQVLSEFVDR--PVDTIDPVERAILRIGVYELLYRLNMPYRVVLNEGI 107

Query: 132 CIAHDFFYGDEPKFINAVLDKVS---RKEEIKRSGC 164
            +A DF      K++N +LDKV+   R  EIK  G 
Sbjct: 108 NLAKDFGADGSHKYVNGILDKVAQQTRAGEIKAKGA 143


>gi|260767831|ref|ZP_05876766.1| transcription termination protein NusB [Vibrio furnissii CIP
           102972]
 gi|260617340|gb|EEX42524.1| transcription termination protein NusB [Vibrio furnissii CIP
           102972]
 gi|315179339|gb|ADT86253.1| N utilization substance protein B [Vibrio furnissii NCTC 11218]
          Length = 156

 Score =  164 bits (416), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 40/155 (25%), Positives = 71/155 (45%), Gaps = 6/155 (3%)

Query: 9   DLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTEL---DVESVYLHVD 65
            +K + RR  AR  A+QA+Y   I   +   I  ++ +     + E    +        D
Sbjct: 4   SVKPAARRN-ARQFALQAIYSWQITKDNVATIEEQFLSGGKYDEEEHHASEPALAAPETD 62

Query: 66  LEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEV 125
           + +FR ++ GV+     +D  +   ++       LDM+  ++LR  + E+     VP +V
Sbjct: 63  VAYFRDLLAGVVLNHTELDSKLRPFVSR--PMQDLDMMELALLRLAMYEMTRREDVPYKV 120

Query: 126 IISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIK 160
           +I+E + +A  F   D  KF+N VLDK +     K
Sbjct: 121 VINEAIELAKVFAAEDSHKFVNGVLDKAAPHVRKK 155


>gi|28897457|ref|NP_797062.1| transcription antitermination protein NusB [Vibrio parahaemolyticus
           RIMD 2210633]
 gi|153840491|ref|ZP_01993158.1| transcription antitermination factor NusB [Vibrio parahaemolyticus
           AQ3810]
 gi|260364269|ref|ZP_05776968.1| transcription antitermination factor NusB [Vibrio parahaemolyticus
           K5030]
 gi|260876417|ref|ZP_05888772.1| transcription antitermination factor NusB [Vibrio parahaemolyticus
           AN-5034]
 gi|260898688|ref|ZP_05907184.1| transcription antitermination factor NusB [Vibrio parahaemolyticus
           Peru-466]
 gi|260899217|ref|ZP_05907612.1| transcription antitermination factor NusB [Vibrio parahaemolyticus
           AQ4037]
 gi|31076798|sp|Q87RU3|NUSB_VIBPA RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|28805669|dbj|BAC58946.1| N utilization substance protein B [Vibrio parahaemolyticus RIMD
           2210633]
 gi|149745845|gb|EDM56975.1| transcription antitermination factor NusB [Vibrio parahaemolyticus
           AQ3810]
 gi|308086855|gb|EFO36550.1| transcription antitermination factor NusB [Vibrio parahaemolyticus
           Peru-466]
 gi|308092966|gb|EFO42661.1| transcription antitermination factor NusB [Vibrio parahaemolyticus
           AN-5034]
 gi|308106640|gb|EFO44180.1| transcription antitermination factor NusB [Vibrio parahaemolyticus
           AQ4037]
 gi|308113746|gb|EFO51286.1| transcription antitermination factor NusB [Vibrio parahaemolyticus
           K5030]
          Length = 155

 Score =  164 bits (416), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 43/155 (27%), Positives = 72/155 (46%), Gaps = 6/155 (3%)

Query: 9   DLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHV---D 65
            +K + RR  AR  A+QA+Y   I   +   I  ++ +     + EL      L     D
Sbjct: 4   SVKPAARRN-ARQFALQAIYSWQITKENVATIEEQFLSGDKYDEEELRASEPALAAPETD 62

Query: 66  LEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEV 125
           + +FR ++ GV+     +D  I   ++       LDM+  ++LR  + E+     VP +V
Sbjct: 63  VAYFRELLSGVVLSHAELDSKIRPYVSR--PMQDLDMMELALLRLAMYEMTRREDVPYKV 120

Query: 126 IISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIK 160
           +I+E + +A  F   D  KF+N VLDK +     K
Sbjct: 121 VINEAIELAKVFAAEDSHKFVNGVLDKAAPHVRKK 155


>gi|323144126|ref|ZP_08078765.1| transcription antitermination factor NusB [Succinatimonas hippei
           YIT 12066]
 gi|322416103|gb|EFY06798.1| transcription antitermination factor NusB [Succinatimonas hippei
           YIT 12066]
          Length = 143

 Score =  164 bits (415), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 45/143 (31%), Positives = 68/143 (47%), Gaps = 13/143 (9%)

Query: 13  SHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVI 72
              R  AR  A+QA+YQ  + G S  EI  ++             +      DL++   +
Sbjct: 10  PAMRHKARHFAMQAIYQWQMTGQSAGEIERQFLE-----------DQPIQGADLDYMHDL 58

Query: 73  IHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVC 132
           I GV+   +HID +    L+       LD +  +ILR G  EL+    +P  V+I+E + 
Sbjct: 59  ISGVVANFEHIDEVYEPFLSR--PLKDLDQVDKAILRLGTFELLYRQEIPFRVVINESIM 116

Query: 133 IAHDFFYGDEPKFINAVLDKVSR 155
           +A +F   D  KF+N VLDKV R
Sbjct: 117 LAKEFAEQDSHKFVNGVLDKVVR 139


>gi|91225065|ref|ZP_01260287.1| transcription antitermination protein NusB [Vibrio alginolyticus
           12G01]
 gi|262395030|ref|YP_003286884.1| transcription termination protein NusB [Vibrio sp. Ex25]
 gi|269965074|ref|ZP_06179239.1| N utilization substance protein B [Vibrio alginolyticus 40B]
 gi|91190008|gb|EAS76279.1| transcription antitermination protein NusB [Vibrio alginolyticus
           12G01]
 gi|262338624|gb|ACY52419.1| transcription termination protein NusB [Vibrio sp. Ex25]
 gi|269830377|gb|EEZ84602.1| N utilization substance protein B [Vibrio alginolyticus 40B]
          Length = 155

 Score =  164 bits (415), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 41/149 (27%), Positives = 72/149 (48%), Gaps = 6/149 (4%)

Query: 9   DLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTEL---DVESVYLHVD 65
            +K + RR  AR  A+QA+Y   I   +  +I  ++ +     + EL   +        D
Sbjct: 4   SVKPAARRN-ARQFALQAIYSWQITKENVAKIEEQFLSGDKYDEEELHASEPALAAPETD 62

Query: 66  LEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEV 125
           + +FR ++ GV+     +D  I   ++       LDM+  ++LR  + E+     VP +V
Sbjct: 63  VAYFRELLSGVVLSHAELDSKIRPYISR--PMQDLDMMELALLRLAMYEMTRREDVPYKV 120

Query: 126 IISEYVCIAHDFFYGDEPKFINAVLDKVS 154
           +I+E + +A  F   D  KF+N VLDK +
Sbjct: 121 VINEAIELAKVFAAEDSHKFVNGVLDKAA 149


>gi|269138332|ref|YP_003295032.1| transcription termination factor [Edwardsiella tarda EIB202]
 gi|267983992|gb|ACY83821.1| transcription termination factor [Edwardsiella tarda EIB202]
 gi|304558364|gb|ADM41028.1| Transcription termination protein NusB [Edwardsiella tarda FL6-60]
          Length = 139

 Score =  164 bits (415), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 40/142 (28%), Positives = 66/142 (46%), Gaps = 13/142 (9%)

Query: 21  LAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRK 80
             AVQALY   I      ++  ++ +           E     VD+ +FR ++ GV    
Sbjct: 11  ECAVQALYSWQISKNDIADVEYQFLS-----------EQDVKDVDVNYFRELLSGVASNA 59

Query: 81  QHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYG 140
            ++D L++  L+ +     L  +  +ILR  + EL +   VP +V I+E + +A  F   
Sbjct: 60  DYLDGLMAPVLSRQ--LEELGQVERAILRVSIYELSKRQDVPYKVAINEGIELAKTFGAE 117

Query: 141 DEPKFINAVLDKVSRKEEIKRS 162
           D  KF+N VLDKV+ +    R 
Sbjct: 118 DSHKFVNGVLDKVAPQVRPNRK 139


>gi|220927277|ref|YP_002502579.1| NusB antitermination factor [Methylobacterium nodulans ORS 2060]
 gi|219951884|gb|ACL62276.1| NusB antitermination factor [Methylobacterium nodulans ORS 2060]
          Length = 156

 Score =  164 bits (415), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 55/152 (36%), Positives = 87/152 (57%), Gaps = 4/152 (2%)

Query: 10  LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF 69
           +K +  R  ARLA VQALY+++I G    + ++E+E +      +      +   +  +F
Sbjct: 1   MKPAE-RSGARLAVVQALYEMEISGKGVIDALAEFEAFWIGQVVDGIE---HPPAETAFF 56

Query: 70  RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISE 129
           R ++ G ++ ++ ID  +   L+  W   R++ +L +ILRAG  E+I    VPV V ISE
Sbjct: 57  RDVLRGAVEEQRVIDQRLDGALSAGWPLRRVEAVLRAILRAGAYEVIFRKDVPVRVAISE 116

Query: 130 YVCIAHDFFYGDEPKFINAVLDKVSRKEEIKR 161
           YV +AH F+ GDEP  +NAVLDKV+R    + 
Sbjct: 117 YVDVAHSFYGGDEPGLVNAVLDKVARAARAEE 148


>gi|260582481|ref|ZP_05850272.1| transcription antitermination factor NusB [Haemophilus influenzae
           NT127]
 gi|260094461|gb|EEW78358.1| transcription antitermination factor NusB [Haemophilus influenzae
           NT127]
          Length = 144

 Score =  164 bits (415), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 48/154 (31%), Positives = 73/154 (47%), Gaps = 16/154 (10%)

Query: 1   MTIQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESV 60
           MT Q   K +K    R  AR   VQALY   + G +  ++        F  D ++D    
Sbjct: 1   MTEQ---KQVKKPSARRRARECTVQALYSWAVSGNTAEQV-----ELAFVLDQDMDG--- 49

Query: 61  YLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHS 120
              VD  +FR +    ++  + +D  IS  +    +F  LD I  +ILR  V EL     
Sbjct: 50  ---VDKPYFRKLFRQTVENIETVDFSISPYIDR--AFDELDPIETAILRLAVYELRFELD 104

Query: 121 VPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVS 154
           VP +V+I+E + +A  F   +  K+IN VLDK++
Sbjct: 105 VPYKVVINEAIEVAKVFGADESHKYINGVLDKIA 138


>gi|323138566|ref|ZP_08073634.1| NusB antitermination factor [Methylocystis sp. ATCC 49242]
 gi|322396200|gb|EFX98733.1| NusB antitermination factor [Methylocystis sp. ATCC 49242]
          Length = 150

 Score =  164 bits (415), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 55/149 (36%), Positives = 84/149 (56%), Gaps = 3/149 (2%)

Query: 15  RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74
           +R  ARLA VQALYQ+++ G    EI +E+E++    + E      Y   ++ +FR ++ 
Sbjct: 5   QRSAARLAIVQALYQMEVAGKGLNEIFAEFESHWIGREIEG---VQYKPAEVTFFRDVLQ 61

Query: 75  GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134
           GV+  +  ID  I   L+  W  SR++ ++ + LRAG  EL     VP  V+I EYV +A
Sbjct: 62  GVLTDQVAIDRQIDRVLSGGWPLSRVEAVMRAALRAGAYELRARKDVPARVVIKEYVDVA 121

Query: 135 HDFFYGDEPKFINAVLDKVSRKEEIKRSG 163
             FF   E   +NAVLDK++R+E  +  G
Sbjct: 122 GAFFGPTESGMVNAVLDKIAREERAEELG 150


>gi|114332465|ref|YP_748687.1| NusB antitermination factor [Nitrosomonas eutropha C91]
 gi|122312909|sp|Q0AD60|NUSB_NITEC RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|114309479|gb|ABI60722.1| NusB antitermination factor [Nitrosomonas eutropha C91]
          Length = 167

 Score =  164 bits (415), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 44/172 (25%), Positives = 79/172 (45%), Gaps = 23/172 (13%)

Query: 1   MTIQDNKKDLKLS-------HRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADT 53
           M   D     K +       +RR ++R  A+Q +YQ  + G +  EI           D 
Sbjct: 1   MIPTDTAPPSKPAQGHKGYKNRRRLSRELALQGIYQWRLAGGNAQEI-----------DL 49

Query: 54  ELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVL 113
           +L   + Y   D  +F  ++ GV++  + ++  I + L  +   + L  + CSIL  G  
Sbjct: 50  QLQQVNFYSKADGSYFSDLLQGVLEHSRDLEAQIQAYLDRQ--LAELSPVECSILLIGTY 107

Query: 114 ELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVS---RKEEIKRS 162
           E++    +P   II+E + +A  +   D  K++N VLDK++   R  E++ S
Sbjct: 108 EMVHHPEIPCRAIINEAIELAKSYGGTDGHKYVNGVLDKLAAQLRAVELQSS 159


>gi|154248201|ref|YP_001419159.1| NusB antitermination factor [Xanthobacter autotrophicus Py2]
 gi|154162286|gb|ABS69502.1| NusB antitermination factor [Xanthobacter autotrophicus Py2]
          Length = 163

 Score =  164 bits (415), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 55/156 (35%), Positives = 89/156 (57%), Gaps = 10/156 (6%)

Query: 8   KDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLE 67
           K +K S     ARL AVQALYQ+D+      +I++E+E++    + E      +   D+ 
Sbjct: 13  KPMKKS----AARLGAVQALYQMDLAQTPLNDILAEFESHWLGQEVEG---VEFPEADVR 65

Query: 68  WFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVII 127
            FR ++ GV++ ++ ID ++ + LT+ W   R++ +L ++LRAG  EL     VP  V+I
Sbjct: 66  LFRTVVEGVLNDQRRIDPMVDNALTKGWPLKRVEAVLRAVLRAGAFELSAKPDVPARVVI 125

Query: 128 SEYVCIAHDFFYGDEPKFINAVLDKVS---RKEEIK 160
           +EYV +A  F   DE   +NAVLD ++   R +E K
Sbjct: 126 TEYVNVAGAFLDRDETGMVNAVLDALAHDLRPDEFK 161


>gi|149187999|ref|ZP_01866294.1| transcription antitermination protein NusB [Vibrio shilonii AK1]
 gi|148837987|gb|EDL54929.1| transcription antitermination protein NusB [Vibrio shilonii AK1]
          Length = 155

 Score =  164 bits (415), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 39/155 (25%), Positives = 70/155 (45%), Gaps = 6/155 (3%)

Query: 9   DLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTE---LDVESVYLHVD 65
            +K + RR  AR  A+QA+Y   I   +   +  ++ +     + E    +        D
Sbjct: 4   SVKPAARRN-ARQFALQAIYSWQITKENVATVEEQFLSGGKYDEEEHHAAEPALTAPETD 62

Query: 66  LEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEV 125
           + +FR ++ GV      +D  +   ++       LDM+  ++LR  + E+     VP +V
Sbjct: 63  VVYFRDLLTGVALNHTELDSKLRPFVSR--PMQDLDMMELALLRLAMYEMTSREDVPYKV 120

Query: 126 IISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIK 160
           +I+E + +A  F   D  KF+N VLDK +     K
Sbjct: 121 VINEAIELAKVFAAEDSHKFVNGVLDKAAPHVRKK 155


>gi|296532920|ref|ZP_06895581.1| transcription antitermination factor NusB [Roseomonas cervicalis
           ATCC 49957]
 gi|296266750|gb|EFH12714.1| transcription antitermination factor NusB [Roseomonas cervicalis
           ATCC 49957]
          Length = 170

 Score =  164 bits (415), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 48/160 (30%), Positives = 80/160 (50%)

Query: 2   TIQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVY 61
            +    +       R  +R+AA+QAL+Q +  G S   +I ++  +R   D     +   
Sbjct: 8   PVGKKPRPPVAGRPRTGSRVAAIQALFQSEQSGESAETVIDQFVRFRIGPDAGGFEDGRV 67

Query: 62  LHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSV 121
              D+  F  ++ GV  + + +D ++   L   W+ +RLD +L ++LRA   EL      
Sbjct: 68  PLADVPLFAGVVRGVARQSEALDGILQGHLAGDWTVARLDPVLRALLRAAAHELSSGTEP 127

Query: 122 PVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKR 161
           P  V+I+EY+ IAH FF G+EP+F N VLD ++R      
Sbjct: 128 PARVVINEYMDIAHGFFSGEEPRFANGVLDAMARSLRAPE 167


>gi|241761517|ref|ZP_04759604.1| NusB antitermination factor [Zymomonas mobilis subsp. mobilis ATCC
           10988]
 gi|283856498|ref|YP_163287.2| NusB antitermination factor [Zymomonas mobilis subsp. mobilis ZM4]
 gi|241373825|gb|EER63358.1| NusB antitermination factor [Zymomonas mobilis subsp. mobilis ATCC
           10988]
 gi|283775502|gb|AAV90176.2| NusB antitermination factor [Zymomonas mobilis subsp. mobilis ZM4]
          Length = 157

 Score =  164 bits (415), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 59/160 (36%), Positives = 87/160 (54%), Gaps = 5/160 (3%)

Query: 4   QDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLH 63
           Q  K+  K  + R  ARLAAVQALYQ ++       ++ E+  YR  A  E   ++ Y  
Sbjct: 3   QTQKRPHK--NARSAARLAAVQALYQREMEKTPLNILLDEFHQYRLGATIE---DATYTK 57

Query: 64  VDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPV 123
            +  +F  I+ GV  R + ID +IS  L+E+WS  RLD  +  ILRAG  EL+    VP 
Sbjct: 58  AEPSFFDDIVRGVGTRCEEIDRVISENLSERWSLDRLDRPMRQILRAGTYELLARPDVPT 117

Query: 124 EVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRSG 163
             +ISEY+ +A+ F+   E  F+N +LD V++K     + 
Sbjct: 118 ATVISEYIDVANAFYDRQEKNFVNGLLDTVAKKLRSSNNA 157


>gi|16273216|ref|NP_439455.1| transcription antitermination protein NusB [Haemophilus influenzae
           Rd KW20]
 gi|145629373|ref|ZP_01785171.1| transcription antitermination protein NusB [Haemophilus influenzae
           22.1-21]
 gi|145633222|ref|ZP_01788953.1| transcription antitermination protein NusB [Haemophilus influenzae
           3655]
 gi|145638873|ref|ZP_01794481.1| transcription antitermination protein NusB [Haemophilus influenzae
           PittII]
 gi|148827000|ref|YP_001291753.1| transcription antitermination protein NusB [Haemophilus influenzae
           PittGG]
 gi|260581349|ref|ZP_05849165.1| transcription antitermination factor NusB [Haemophilus influenzae
           RdAW]
 gi|319776247|ref|YP_004138735.1| transcription antitermination protein [Haemophilus influenzae
           F3047]
 gi|319897123|ref|YP_004135318.1| transcription antitermination protein [Haemophilus influenzae
           F3031]
 gi|329123386|ref|ZP_08251950.1| transcription termination/antitermination factor NusB [Haemophilus
           aegyptius ATCC 11116]
 gi|1171874|sp|P45150|NUSB_HAEIN RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|166215691|sp|A5UF14|NUSB_HAEIG RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|1574763|gb|AAC22951.1| N utilization substance protein B (nusB) [Haemophilus influenzae Rd
           KW20]
 gi|144978216|gb|EDJ87980.1| transcription antitermination protein NusB [Haemophilus influenzae
           22.1-21]
 gi|144986068|gb|EDJ92658.1| transcription antitermination protein NusB [Haemophilus influenzae
           3655]
 gi|145271845|gb|EDK11754.1| transcription antitermination protein NusB [Haemophilus influenzae
           PittII]
 gi|148718242|gb|ABQ99369.1| transcription antitermination protein NusB [Haemophilus influenzae
           PittGG]
 gi|260092016|gb|EEW75963.1| transcription antitermination factor NusB [Haemophilus influenzae
           RdAW]
 gi|309750850|gb|ADO80834.1| Transcription antitermination protein NusB [Haemophilus influenzae
           R2866]
 gi|317432627|emb|CBY80988.1| transcription antitermination protein [Haemophilus influenzae
           F3031]
 gi|317450838|emb|CBY87062.1| transcription antitermination protein [Haemophilus influenzae
           F3047]
 gi|327470968|gb|EGF16423.1| transcription termination/antitermination factor NusB [Haemophilus
           aegyptius ATCC 11116]
          Length = 144

 Score =  164 bits (415), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 48/154 (31%), Positives = 73/154 (47%), Gaps = 16/154 (10%)

Query: 1   MTIQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESV 60
           MT Q   K +K    R  AR   VQALY   + G +  ++        F  D ++D    
Sbjct: 1   MTEQ---KQVKKPSARRRARECTVQALYSWAVSGNTAEQV-----ELAFVLDQDMDG--- 49

Query: 61  YLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHS 120
              VD  +FR +    ++  + +D  IS  +    +F  LD I  +ILR  V EL     
Sbjct: 50  ---VDKPYFRKLFRQTIENIETVDFSISPYIDR--AFDELDPIETAILRLAVYELRFELD 104

Query: 121 VPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVS 154
           VP +V+I+E + +A  F   +  K+IN VLDK++
Sbjct: 105 VPYKVVINEAIEVAKVFGADESHKYINGVLDKIA 138


>gi|94676751|ref|YP_589030.1| transcription antitermination protein NusB [Baumannia
           cicadellinicola str. Hc (Homalodisca coagulata)]
 gi|119372277|sp|Q1LSN4|NUSB_BAUCH RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|94219901|gb|ABF14060.1| transcription antitermination factor NusB [Baumannia
           cicadellinicola str. Hc (Homalodisca coagulata)]
          Length = 139

 Score =  164 bits (415), Expect = 6e-39,   Method: Composition-based stats.
 Identities = 40/153 (26%), Positives = 69/153 (45%), Gaps = 14/153 (9%)

Query: 10  LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF 69
           +K++ RR  AR  AVQALY   +   +  +I +++             E     +D+ +F
Sbjct: 1   MKITARRR-ARECAVQALYSWQLSNNNIADIEAQFLA-----------EQDIKGIDVAYF 48

Query: 70  RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISE 129
           R +  G       +D L+   L+      +L  +  ++LR  + EL +   +P  V I+E
Sbjct: 49  RELYSGTAIAADMLDQLMVPYLSR--PLDKLGHVERAVLRLALYELSKRQDIPYRVAINE 106

Query: 130 YVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRS 162
            + +A  F   D  KFIN VL+K + +    R 
Sbjct: 107 AIELAKTFGAEDSYKFINGVLEKTASQIRPHRK 139


>gi|300114881|ref|YP_003761456.1| NusB antitermination factor [Nitrosococcus watsonii C-113]
 gi|299540818|gb|ADJ29135.1| NusB antitermination factor [Nitrosococcus watsonii C-113]
          Length = 148

 Score =  163 bits (414), Expect = 6e-39,   Method: Composition-based stats.
 Identities = 40/148 (27%), Positives = 71/148 (47%), Gaps = 14/148 (9%)

Query: 12  LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71
           +S+RR  AR AA+Q LYQ  + G    +I  E+            +      +D  +F+ 
Sbjct: 1   MSNRRSKARTAALQGLYQWQLTGQDVDKIDIEF------------IVQDIRGIDHAYFQA 48

Query: 72  IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
           ++ GV  R+  +D  +   L        +D + C+ILR G  EL+    +P  V+++E +
Sbjct: 49  LLQGVPQRQWELDECLGPFLDR--PIHEIDPVECAILRIGAFELLCRPEIPYRVVLNEAI 106

Query: 132 CIAHDFFYGDEPKFINAVLDKVSRKEEI 159
            +A  F      +++N +LDKV++K   
Sbjct: 107 ELAKRFGAEHGHRYVNGILDKVAQKVRA 134


>gi|149202343|ref|ZP_01879316.1| transcription antitermination factor NusB [Roseovarius sp. TM1035]
 gi|149144441|gb|EDM32472.1| transcription antitermination factor NusB [Roseovarius sp. TM1035]
          Length = 160

 Score =  163 bits (414), Expect = 6e-39,   Method: Composition-based stats.
 Identities = 52/161 (32%), Positives = 84/161 (52%), Gaps = 4/161 (2%)

Query: 1   MTIQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESV 60
           MT        +    +  ARL AVQAL+Q++  G S+  +  E+  +RF A  E+D    
Sbjct: 1   MTTDPALSGNRKRQMKSAARLYAVQALFQMEHSGQSSDTVSEEFLDFRFGA--EVDEGVD 58

Query: 61  YLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHS 120
               D++ FR ++   +  +  ID +    L  KW  +R+D  L ++ RA   EL++   
Sbjct: 59  MAEGDVDLFRKLLDDAVSWQAKIDQMTDRALVAKWPIARIDPTLRALFRAAGAELVQS-D 117

Query: 121 VPVEVIISEYVCIAHDFF-YGDEPKFINAVLDKVSRKEEIK 160
            P +V+I EYV +A  F+  G E KF+NAVLD ++R+   +
Sbjct: 118 TPPKVVIMEYVDVAKAFYPDGKESKFVNAVLDHMAREARPE 158


>gi|110835031|ref|YP_693890.1| transcriptional terminator nusB [Alcanivorax borkumensis SK2]
 gi|119372273|sp|Q0VMI0|NUSB_ALCBS RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|110648142|emb|CAL17618.1| transcriptional terminator nusB [Alcanivorax borkumensis SK2]
          Length = 150

 Score =  163 bits (414), Expect = 6e-39,   Method: Composition-based stats.
 Identities = 42/148 (28%), Positives = 72/148 (48%), Gaps = 13/148 (8%)

Query: 9   DLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEW 68
           +      R  AR   +QALYQ  + G + ++I +++                +  VD E+
Sbjct: 3   NPSTPSARRKARRFTLQALYQWQLAGAAVSDIEAQFLA-----------NQDFAKVDREY 51

Query: 69  FRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIIS 128
           F  ++HGV+ + + +D  ++  L        L  +  +ILR G  EL E   VP  V+I+
Sbjct: 52  FHDLLHGVLGQVKTLDEQLTPYLDR--RVEELSQVEKAILRLGAFELKERQDVPYRVVIN 109

Query: 129 EYVCIAHDFFYGDEPKFINAVLDKVSRK 156
           E + +A  F   D  K++N VLDK++R+
Sbjct: 110 EGIELAKVFGAEDSFKYVNGVLDKLARQ 137


>gi|90023094|ref|YP_528921.1| transcription antitermination protein NusB [Saccharophagus
           degradans 2-40]
 gi|119390816|sp|Q21F20|NUSB_SACD2 RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|89952694|gb|ABD82709.1| N utilization substance protein B [Saccharophagus degradans 2-40]
          Length = 150

 Score =  163 bits (414), Expect = 6e-39,   Method: Composition-based stats.
 Identities = 53/155 (34%), Positives = 80/155 (51%), Gaps = 16/155 (10%)

Query: 10  LKLSHR-RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEW 68
           +K+S   RG AR  A+QALYQ ++ G +   I +E+ T           ++    VD+E+
Sbjct: 1   MKVSAAARGRARHFAMQALYQWEMSGNALHVIEAEFHT-----------DNDMSKVDVEY 49

Query: 69  FRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIIS 128
           F  I+HGV   K  +D      LT       +D +  ++LR    E  +   VP +V+I+
Sbjct: 50  FHEILHGVAAIKSTLDETFKPFLT-GLRLDEIDPVSLAVLRQACYEFEKRVDVPYKVVIN 108

Query: 129 EYVCIAHDFFYGDEPKFINAVLDKVS---RKEEIK 160
           E V +A  F   D  KFIN VLDKV+   RK+E++
Sbjct: 109 EAVNLAKKFGAADSHKFINGVLDKVALRVRKDEVE 143


>gi|332559221|ref|ZP_08413543.1| NusB antitermination factor [Rhodobacter sphaeroides WS8N]
 gi|332276933|gb|EGJ22248.1| NusB antitermination factor [Rhodobacter sphaeroides WS8N]
          Length = 148

 Score =  163 bits (414), Expect = 6e-39,   Method: Composition-based stats.
 Identities = 55/146 (37%), Positives = 86/146 (58%), Gaps = 5/146 (3%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           +  +RL AVQAL+Q++  G +  ++  E+ET+RF A  E D        D + FR I+ G
Sbjct: 2   KSASRLYAVQALFQMETTGQTVEQVAREFETHRFGAVYEGDE---MAEGDAKSFRAIVSG 58

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
            ++R+  ID +    L  KW   R+D ++ ++ RA   EL+E    P +V+I+E+V IA 
Sbjct: 59  AVNRQAGIDQMTDRALVAKWPIDRIDPVIRALFRAAGSELLES-ETPPKVVINEFVDIAK 117

Query: 136 DFF-YGDEPKFINAVLDKVSRKEEIK 160
            FF  G EPKF+NAVLD ++R+   +
Sbjct: 118 AFFPEGREPKFVNAVLDHMAREARPE 143


>gi|85707944|ref|ZP_01039010.1| transcription termination factor [Erythrobacter sp. NAP1]
 gi|85689478|gb|EAQ29481.1| transcription termination factor [Erythrobacter sp. NAP1]
          Length = 155

 Score =  163 bits (414), Expect = 6e-39,   Method: Composition-based stats.
 Identities = 57/149 (38%), Positives = 83/149 (55%), Gaps = 2/149 (1%)

Query: 12  LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCA--DTELDVESVYLHVDLEWF 69
            S  R  ARLAAVQALYQ  + G +  +++ E+  +R     D E     VY   ++E+F
Sbjct: 6   RSQARSTARLAAVQALYQQQMEGTALNKLLDEFHQHRLGREVDDEDHEGEVYADAEVEFF 65

Query: 70  RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISE 129
             I+ GV  R+  ID ++++ L + W+  RLD  +  ILRAG  ELI    VP    I+E
Sbjct: 66  DDIVRGVDARRDEIDEILTARLAQGWTLMRLDKTMLQILRAGAYELIARADVPRASAITE 125

Query: 130 YVCIAHDFFYGDEPKFINAVLDKVSRKEE 158
           YV +A  FF   E KF+N +LD V+++  
Sbjct: 126 YVDVAKAFFDDREAKFVNGILDAVAKEAR 154


>gi|254427255|ref|ZP_05040962.1| transcription antitermination factor NusB [Alcanivorax sp. DG881]
 gi|196193424|gb|EDX88383.1| transcription antitermination factor NusB [Alcanivorax sp. DG881]
          Length = 149

 Score =  163 bits (414), Expect = 7e-39,   Method: Composition-based stats.
 Identities = 43/141 (30%), Positives = 72/141 (51%), Gaps = 13/141 (9%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           R  AR   +QALYQ  + G + ++I +++                +  VD E+F  ++HG
Sbjct: 9   RRKARRFTLQALYQWQLAGAAVSDIEAQFLA-----------NQDFAKVDREYFHDLLHG 57

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
           V+ + + +D L++  L        L  +  +ILR G  EL E   VP  V+I+E + +A 
Sbjct: 58  VLGQVKTLDELLTPYLDR--RVEELSQVEKAILRLGAFELKERQDVPYRVVINEGIELAK 115

Query: 136 DFFYGDEPKFINAVLDKVSRK 156
            F   D  K++N VLDK++R+
Sbjct: 116 VFGAEDSFKYVNGVLDKLARQ 136


>gi|330993560|ref|ZP_08317495.1| N utilization substance protein B-like protein [Gluconacetobacter
           sp. SXCC-1]
 gi|329759590|gb|EGG76099.1| N utilization substance protein B-like protein [Gluconacetobacter
           sp. SXCC-1]
          Length = 177

 Score =  163 bits (414), Expect = 7e-39,   Method: Composition-based stats.
 Identities = 57/161 (35%), Positives = 87/161 (54%), Gaps = 4/161 (2%)

Query: 1   MTIQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELD---V 57
           MT  D  +  K+   R  +R+AAVQAL+QI+  G S   +I+++  +R       D    
Sbjct: 1   MTQTDGDRQPKV-RSRTASRVAAVQALFQIEQAGESPEHVINQFNRHRLGTSVVQDGSYA 59

Query: 58  ESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIE 117
           E      D   F +++ G + R++ ID L+   L   W  +RLD +L +I+ A   E+  
Sbjct: 60  EGQVPDADARLFGIVVRGAVARQERIDGLLHEILPASWPLARLDPVLRAIMHAAGGEMTG 119

Query: 118 CHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEE 158
              VP  VII+EY+ IAH F  GDEP+ +N VLD +SR+ +
Sbjct: 120 ADPVPARVIINEYMDIAHGFLAGDEPRMLNGVLDALSRRLQ 160


>gi|254475988|ref|ZP_05089374.1| transcription antitermination factor NusB [Ruegeria sp. R11]
 gi|214030231|gb|EEB71066.1| transcription antitermination factor NusB [Ruegeria sp. R11]
          Length = 163

 Score =  163 bits (414), Expect = 7e-39,   Method: Composition-based stats.
 Identities = 56/165 (33%), Positives = 85/165 (51%), Gaps = 9/165 (5%)

Query: 1   MTIQDN----KKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELD 56
           MT  D+     K       R  +RL AVQAL+Q++    +   +I E+E +RF A  E  
Sbjct: 1   MTTSDSQGAAPKGNDKHKMRSASRLYAVQALFQMEHSNLTLDRVIVEFEDFRFGAVYE-- 58

Query: 57  VESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELI 116
            +      D + FR ++   +  +  ID +    L  KW   R+D  L ++ RA   EL 
Sbjct: 59  -DGEMAEGDSKVFRKLVEDAVSHQARIDQMTDRALVAKWPIGRIDPTLRALFRAAGAELT 117

Query: 117 ECHSVPVEVIISEYVCIAHDFF-YGDEPKFINAVLDKVSRKEEIK 160
           E    P +V+I+E+V IA  FF  G EPKF+NAVLD ++R+ + +
Sbjct: 118 ESK-TPPKVVINEFVDIARAFFPEGKEPKFVNAVLDHMAREAKPE 161


>gi|77164321|ref|YP_342846.1| NusB antitermination factor [Nitrosococcus oceani ATCC 19707]
 gi|119390790|sp|Q3JCY0|NUSB_NITOC RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|76882635|gb|ABA57316.1| NusB antitermination factor [Nitrosococcus oceani ATCC 19707]
          Length = 148

 Score =  163 bits (413), Expect = 7e-39,   Method: Composition-based stats.
 Identities = 40/148 (27%), Positives = 73/148 (49%), Gaps = 14/148 (9%)

Query: 12  LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71
           +S+RR  AR AA+Q LYQ  ++G    +I  E+            +      +D  +F+ 
Sbjct: 1   MSNRRSKARTAALQGLYQWQLMGQDVDKIDIEF------------IVQDIRGIDHAYFQE 48

Query: 72  IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
           ++ GV  R+  +D  +   L      + +D + C+ILR G  EL+    +P  V+++E +
Sbjct: 49  LLRGVPQRQGELDECLGPFLDR--PINEVDPVECAILRIGAFELLCRPEIPYRVVLNEAI 106

Query: 132 CIAHDFFYGDEPKFINAVLDKVSRKEEI 159
            +A  F      +++N +LDKV++K   
Sbjct: 107 ELAKRFGAEHGHRYVNGILDKVAQKVRA 134


>gi|260913902|ref|ZP_05920376.1| transcription termination/antitermination factor NusB [Pasteurella
           dagmatis ATCC 43325]
 gi|260631989|gb|EEX50166.1| transcription termination/antitermination factor NusB [Pasteurella
           dagmatis ATCC 43325]
          Length = 144

 Score =  163 bits (413), Expect = 8e-39,   Method: Composition-based stats.
 Identities = 44/150 (29%), Positives = 68/150 (45%), Gaps = 13/150 (8%)

Query: 11  KLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFR 70
           K    R  AR  AVQALY   +   S  EI  E+             E     VD+ +FR
Sbjct: 8   KKVSPRRRARECAVQALYSWYVSQNSPAEIELEFVA-----------EQDLKGVDVPYFR 56

Query: 71  VIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEY 130
            +    ++  + +D++++  L      + +D I  +ILR  V EL     VP +V+I+E 
Sbjct: 57  KLFRQTVENVETVDVIMAPYLDR--DVNEVDPIEKAILRLAVYELKFELDVPYKVVINEA 114

Query: 131 VCIAHDFFYGDEPKFINAVLDKVSRKEEIK 160
           + +   F   D  K++N VLDKV+     K
Sbjct: 115 IEVTKVFGADDSHKYVNGVLDKVAPALSRK 144


>gi|260772216|ref|ZP_05881132.1| transcription termination protein NusB [Vibrio metschnikovii CIP
           69.14]
 gi|260611355|gb|EEX36558.1| transcription termination protein NusB [Vibrio metschnikovii CIP
           69.14]
          Length = 156

 Score =  163 bits (413), Expect = 8e-39,   Method: Composition-based stats.
 Identities = 41/155 (26%), Positives = 71/155 (45%), Gaps = 6/155 (3%)

Query: 9   DLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHV---D 65
            +K + RR  AR  A+QA+Y   I   +   I  ++ +     + E       L     D
Sbjct: 4   SVKPAARRN-ARQFALQAIYSWQITKENVATIEEQFLSGGKYDEEEHHAAEPALSAPQTD 62

Query: 66  LEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEV 125
           + +FR ++ GV+     +D  +   ++       LDM+  ++LR  + E+     VP +V
Sbjct: 63  VTYFRDLLVGVVLNHTELDSKLRPFVSR--PMQDLDMMELALLRLAMYEMTRREDVPYKV 120

Query: 126 IISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIK 160
           +I+E + +A  F   D  KF+N VLDK +     K
Sbjct: 121 VINEAIELAKVFAAEDSHKFVNGVLDKAAPHVRKK 155


>gi|183601040|ref|ZP_02962533.1| hypothetical protein PROSTU_04661 [Providencia stuartii ATCC 25827]
 gi|188019378|gb|EDU57418.1| hypothetical protein PROSTU_04661 [Providencia stuartii ATCC 25827]
          Length = 138

 Score =  163 bits (413), Expect = 8e-39,   Method: Composition-based stats.
 Identities = 39/141 (27%), Positives = 66/141 (46%), Gaps = 13/141 (9%)

Query: 21  LAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRK 80
             AVQA+Y   + G + +++  E+             E     VD+ +FR ++ GV +  
Sbjct: 11  ECAVQAIYSWQLSGNNVSDVEYEFIA-----------EQDMSDVDVIYFRELLSGVANNA 59

Query: 81  QHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYG 140
             +D L++  L+ +     L  +  +ILR  + EL     VP +V I+E + +A  F   
Sbjct: 60  AKLDQLMAPFLSRQ--LEELGQVEKAILRVAMYELSYREDVPYKVAINEGIELAKVFGAE 117

Query: 141 DEPKFINAVLDKVSRKEEIKR 161
           D  KF+N VLDK +     K+
Sbjct: 118 DSHKFVNGVLDKAAPSVRRKK 138


>gi|260753881|ref|YP_003226774.1| NusB antitermination factor [Zymomonas mobilis subsp. mobilis NCIMB
           11163]
 gi|258553244|gb|ACV76190.1| NusB antitermination factor [Zymomonas mobilis subsp. mobilis NCIMB
           11163]
          Length = 157

 Score =  163 bits (413), Expect = 8e-39,   Method: Composition-based stats.
 Identities = 60/160 (37%), Positives = 87/160 (54%), Gaps = 5/160 (3%)

Query: 4   QDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLH 63
           Q  K+  K  + R  ARLAAVQALYQ ++       ++ E+  YR  A  E   ++ Y  
Sbjct: 3   QTQKRPHK--NARSAARLAAVQALYQREMEKTPLNILLDEFHQYRLGATIE---DATYTK 57

Query: 64  VDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPV 123
            +  +F  I+ GV  R + ID +IS  L+E+WS  RLD  +  ILRAG  EL+    VP 
Sbjct: 58  AEPSFFDDIVRGVGTRCEEIDRVISENLSERWSLDRLDRPMRQILRAGTYELLARPDVPT 117

Query: 124 EVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRSG 163
             IISEY+ +A+ F+   E  F+N +LD V++K     + 
Sbjct: 118 ATIISEYIDVANAFYDRQEKNFVNGLLDTVAKKLRSSNNA 157


>gi|119472104|ref|ZP_01614335.1| transcription termination factor [Alteromonadales bacterium TW-7]
 gi|119445124|gb|EAW26417.1| transcription termination factor [Alteromonadales bacterium TW-7]
          Length = 136

 Score =  163 bits (413), Expect = 9e-39,   Method: Composition-based stats.
 Identities = 45/146 (30%), Positives = 74/146 (50%), Gaps = 14/146 (9%)

Query: 10  LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF 69
           +K + RR  AR+ A+QA+Y   + G +  +I           + ++ +E+    +D+E+F
Sbjct: 1   MKPAARR-KARILALQAVYSWQLSGNAIADI-----------EQQMLIENDVTKIDVEYF 48

Query: 70  RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISE 129
           + +  GV    + +D  +S  LT    F  LDM+  +ILR    EL     VP +V I+E
Sbjct: 49  KDLASGVAVNYKLLDESVSPHLTR--PFDDLDMVERAILRLSSYELKFREDVPYKVAINE 106

Query: 130 YVCIAHDFFYGDEPKFINAVLDKVSR 155
            + +A  F   D  KF+N VLDK  +
Sbjct: 107 GIELAKIFGAEDSHKFVNGVLDKAVK 132


>gi|292492483|ref|YP_003527922.1| transcription antitermination factor NusB [Nitrosococcus halophilus
           Nc4]
 gi|291581078|gb|ADE15535.1| transcription antitermination factor NusB [Nitrosococcus halophilus
           Nc4]
          Length = 150

 Score =  163 bits (413), Expect = 9e-39,   Method: Composition-based stats.
 Identities = 39/148 (26%), Positives = 70/148 (47%), Gaps = 14/148 (9%)

Query: 12  LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71
           +S+ R  AR AA+Q LYQ  + G     I   +            +      +D  +F+ 
Sbjct: 1   MSNNRSKARAAALQGLYQWQLTGQDVDTIDVGF------------IFQGTRGIDQAYFQE 48

Query: 72  IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
           ++ GV  ++Q +D  +   L      + +D + C+ILR G  EL+    +P  V+++E +
Sbjct: 49  LLQGVPQQQQALDECLGPFLDR--PINEVDPVECTILRIGAFELLFRSDIPYRVVLNEAI 106

Query: 132 CIAHDFFYGDEPKFINAVLDKVSRKEEI 159
            +A  F      +++N +LDKV+RK   
Sbjct: 107 ELAKRFGAEHGHRYVNGILDKVARKVRA 134


>gi|126727899|ref|ZP_01743727.1| transcription antitermination factor NusB [Rhodobacterales
           bacterium HTCC2150]
 gi|126702840|gb|EBA01945.1| transcription antitermination factor NusB [Rhodobacterales
           bacterium HTCC2150]
          Length = 155

 Score =  163 bits (413), Expect = 9e-39,   Method: Composition-based stats.
 Identities = 53/161 (32%), Positives = 85/161 (52%), Gaps = 9/161 (5%)

Query: 1   MTIQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESV 60
           MT+  N+    +   +  AR  AVQAL+Q++  G    ++ISE+E +RF A  + D    
Sbjct: 1   MTVSGNQ----MRKMKSAARFFAVQALFQLEHSGQEVDKVISEFEEHRFGATFDGDE--- 53

Query: 61  YLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHS 120
               D   F +++ G ++ +  ID +    L  KW   R+D  L ++ RA   EL E   
Sbjct: 54  MQEGDPATFGLLMRGAVNLQAKIDQMTDRALVVKWPLGRIDPTLRALFRAAGAELTEG-E 112

Query: 121 VPVEVIISEYVCIAHDFFYG-DEPKFINAVLDKVSRKEEIK 160
            P +V+I+E+V +A  FF    EPKF+N VLD ++R+   +
Sbjct: 113 TPPKVVINEFVEVARAFFPETKEPKFVNGVLDHMAREARPE 153


>gi|328954274|ref|YP_004371608.1| NusB antitermination factor [Desulfobacca acetoxidans DSM 11109]
 gi|328454598|gb|AEB10427.1| NusB antitermination factor [Desulfobacca acetoxidans DSM 11109]
          Length = 142

 Score =  163 bits (413), Expect = 9e-39,   Method: Composition-based stats.
 Identities = 36/147 (24%), Positives = 66/147 (44%), Gaps = 12/147 (8%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           + +AR  A+Q LYQI+I G       + +  +    +            +  +F  ++ G
Sbjct: 6   KSLARERALQCLYQIEITGREVEGAAALFWEHFHSEER-----------NSAYFHRLVAG 54

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
           V    + +D  IS   ++ W   R+  +  +ILR  + EL+ C  VP +V+++E V +  
Sbjct: 55  VRGHCEELDAYISRF-SQHWRLERMASVDRNILRLAIFELLHCPEVPPKVVVNEAVELGK 113

Query: 136 DFFYGDEPKFINAVLDKVSRKEEIKRS 162
            F   +   FIN +LD   +  +  R 
Sbjct: 114 RFGAENSGAFINGILDSFLKARQPDRG 140


>gi|301170042|emb|CBW29646.1| transcription antitermination protein [Haemophilus influenzae
           10810]
          Length = 144

 Score =  163 bits (413), Expect = 9e-39,   Method: Composition-based stats.
 Identities = 45/154 (29%), Positives = 71/154 (46%), Gaps = 16/154 (10%)

Query: 1   MTIQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESV 60
           MT Q   K +K    R  AR   VQALY   + G +  ++   +            ++  
Sbjct: 1   MTEQ---KQVKKPSARRRARECTVQALYSWAVSGNTAEQVELAFV-----------LDQD 46

Query: 61  YLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHS 120
              VD  +FR +    ++  + +D  IS  +    +F  LD I  +ILR  V EL     
Sbjct: 47  MEGVDKPYFRKLFRQTIENIETVDFSISPYIDR--AFDELDPIETAILRLAVYELRFELD 104

Query: 121 VPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVS 154
           VP +V+I+E + +A  F   +  K+IN VLDK++
Sbjct: 105 VPYKVVINEAIEVAKVFGADESHKYINGVLDKIA 138


>gi|258627344|ref|ZP_05722128.1| N utilization substance protein B [Vibrio mimicus VM603]
 gi|262166342|ref|ZP_06034079.1| transcription termination protein NusB [Vibrio mimicus VM223]
 gi|258580382|gb|EEW05347.1| N utilization substance protein B [Vibrio mimicus VM603]
 gi|262026058|gb|EEY44726.1| transcription termination protein NusB [Vibrio mimicus VM223]
          Length = 152

 Score =  162 bits (412), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 42/154 (27%), Positives = 71/154 (46%), Gaps = 6/154 (3%)

Query: 10  LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHV---DL 66
           +K + RR  AR  A+QA+Y   I   +   I  ++ T     + E       L     D+
Sbjct: 1   MKPAARRN-ARQFALQAIYSWQITKENVATIEEQFLTSGKYDEEEHRAAEPALAAPETDV 59

Query: 67  EWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVI 126
            +FR ++ GV+     +D  +   ++       LDM+  ++LR  + E+     VP +V+
Sbjct: 60  SYFRDLLAGVVLNHTELDSKLRPFVSR--PMQDLDMMELALLRLAMYEMTRREDVPYKVV 117

Query: 127 ISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIK 160
           I+E + +A  F   D  KF+N VLDK +     K
Sbjct: 118 INEAIELAKVFAAEDSHKFVNGVLDKAAPHVRKK 151


>gi|242240313|ref|YP_002988494.1| transcription antitermination protein NusB [Dickeya dadantii
           Ech703]
 gi|242132370|gb|ACS86672.1| NusB antitermination factor [Dickeya dadantii Ech703]
          Length = 139

 Score =  162 bits (412), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 37/132 (28%), Positives = 62/132 (46%), Gaps = 13/132 (9%)

Query: 21  LAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRK 80
             AVQALY   +      ++  ++ +           E      D+ +FR ++ GV  + 
Sbjct: 11  ECAVQALYSWQLSKNDIADVELQFLS-----------EQDVKGADITYFRELLTGVATQA 59

Query: 81  QHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYG 140
           + +D L++  L+ +     L  +  +ILR  V EL +   VP +V I+E + +A  F   
Sbjct: 60  ERLDALMAPYLSRQ--LDELGQVERAILRLAVYELSKREDVPYKVAINEAIELAKVFGAE 117

Query: 141 DEPKFINAVLDK 152
           D  KF+N VLDK
Sbjct: 118 DSHKFVNGVLDK 129


>gi|289208845|ref|YP_003460911.1| NusB antitermination factor [Thioalkalivibrio sp. K90mix]
 gi|288944476|gb|ADC72175.1| NusB antitermination factor [Thioalkalivibrio sp. K90mix]
          Length = 187

 Score =  162 bits (412), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 41/147 (27%), Positives = 69/147 (46%), Gaps = 13/147 (8%)

Query: 8   KDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLE 67
            + +  H R +AR  A+QALY   +      +I++E+             +  +   D E
Sbjct: 42  PEQRARHARSVARRRAMQALYSWQMTAAEPKDILAEFRD-----------DEEHAKADAE 90

Query: 68  WFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVII 127
           +FR I+ GV   ++ +D  +   L       +LD +  ++L  G  EL E   VP  V+I
Sbjct: 91  YFREILIGVTRNREALDARMEPYLGR--PLDQLDPVERALLWLGQWELAERIDVPYRVVI 148

Query: 128 SEYVCIAHDFFYGDEPKFINAVLDKVS 154
           +E V +A  F      ++IN VLD++S
Sbjct: 149 NEAVDLAKRFGAEQSHRYINGVLDRLS 175


>gi|238918991|ref|YP_002932505.1| transcription antitermination factor NusB, [Edwardsiella ictaluri
           93-146]
 gi|259514829|sp|C5BCH6|NUSB_EDWI9 RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|238868559|gb|ACR68270.1| transcription antitermination factor NusB, putative [Edwardsiella
           ictaluri 93-146]
          Length = 139

 Score =  162 bits (412), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 40/142 (28%), Positives = 68/142 (47%), Gaps = 13/142 (9%)

Query: 21  LAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRK 80
             AVQALY   I      ++  ++ + +   D           VD+ +FR ++ GV    
Sbjct: 11  ECAVQALYSWQISKNDIADVEYQFLSEQDVKD-----------VDVNYFRELLSGVASNA 59

Query: 81  QHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYG 140
           +++D L++  L+ +     L  +  +ILR  + EL +   VP +V I+E + +A  F   
Sbjct: 60  EYLDGLMAPVLSRQ--LDELGQVERAILRVSIYELSKRQDVPYKVAINEGIELAKIFGAE 117

Query: 141 DEPKFINAVLDKVSRKEEIKRS 162
           D  KF+N VLDKV+ +    R 
Sbjct: 118 DSHKFVNGVLDKVAPQVRPNRK 139


>gi|182677206|ref|YP_001831352.1| NusB antitermination factor [Beijerinckia indica subsp. indica ATCC
           9039]
 gi|182633089|gb|ACB93863.1| NusB antitermination factor [Beijerinckia indica subsp. indica ATCC
           9039]
          Length = 155

 Score =  162 bits (412), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 53/147 (36%), Positives = 86/147 (58%), Gaps = 3/147 (2%)

Query: 10  LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF 69
           +  + +R  ARLAAVQALYQ+++      E ++E+E++    + E D    Y   ++ +F
Sbjct: 1   MANAEQRSAARLAAVQALYQMEVTEKGLNETLAEFESFWIGNEIEGDQ---YKEAEIAFF 57

Query: 70  RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISE 129
           R I+ GV+  ++ ID  +   L + W   R+D ++ +ILRAG  EL +   +P  V I E
Sbjct: 58  RDILGGVLADQEPIDRQLDKTLVDGWPLRRVDPVVRAILRAGAYELKKRTDIPARVSIKE 117

Query: 130 YVCIAHDFFYGDEPKFINAVLDKVSRK 156
           YV +A  FF  +E   INAVLD+++R+
Sbjct: 118 YVDVAGAFFGREESGMINAVLDELARR 144


>gi|27363793|ref|NP_759321.1| transcription antitermination protein NusB [Vibrio vulnificus
           CMCP6]
 gi|37679049|ref|NP_933658.1| transcription antitermination protein NusB [Vibrio vulnificus
           YJ016]
 gi|320157202|ref|YP_004189581.1| 6,7-dimethyl-8-ribityllumazine synthase [Vibrio vulnificus
           MO6-24/O]
 gi|29611804|sp|Q8DFA0|NUSB_VIBVU RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|39931709|sp|Q7MN52|NUSB_VIBVY RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|27359910|gb|AAO08848.1| transcription antitermination factor NusB [Vibrio vulnificus CMCP6]
 gi|37197791|dbj|BAC93629.1| transcription termination factor [Vibrio vulnificus YJ016]
 gi|319932514|gb|ADV87378.1| 6,7-dimethyl-8-ribityllumazine synthase [Vibrio vulnificus
           MO6-24/O]
          Length = 155

 Score =  162 bits (412), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 42/155 (27%), Positives = 71/155 (45%), Gaps = 6/155 (3%)

Query: 9   DLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHV---D 65
            +K + RR  AR  A+QA+Y   I   +   I +++       + E       L     D
Sbjct: 4   SVKPAARRN-ARQFALQAIYSWQITKENVATIEAQFLAGEKYDEEEHRAAEPALAAPETD 62

Query: 66  LEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEV 125
           + +FR ++ GV+     +D  I   ++       LDM+  ++LR  + E+     VP +V
Sbjct: 63  VAYFRDLLTGVVLSHTELDSKIRPYVSR--PMQDLDMMELALLRLAMYEMTRREDVPYKV 120

Query: 126 IISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIK 160
           +I+E + +A  F   D  KF+N VLDK +     K
Sbjct: 121 VINEAIELAKVFAAEDSHKFVNGVLDKAAPHVRKK 155


>gi|260425570|ref|ZP_05779550.1| transcription antitermination factor NusB [Citreicella sp. SE45]
 gi|260423510|gb|EEX16760.1| transcription antitermination factor NusB [Citreicella sp. SE45]
          Length = 163

 Score =  162 bits (411), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 58/164 (35%), Positives = 88/164 (53%), Gaps = 7/164 (4%)

Query: 1   MTIQDNKKDLKLSHRRG---IARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDV 57
           MT  D    L  + +R     +RL AVQALYQ++  G S   + +E+  +RF A+ E  V
Sbjct: 1   MTNPDTPPALSGNQKRRMKSASRLYAVQALYQMEAAGQSVERVQNEFVDHRFGAEIEEGV 60

Query: 58  ESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIE 117
           E   L  D+  F  I    ++ +  ID +    L  KW  +R+D  L ++ RA   E ++
Sbjct: 61  E--MLDGDVGLFGRITSAAVNWQAKIDQMTDRALVAKWPIARIDPTLRALFRAAGAEFVD 118

Query: 118 CHSVPVEVIISEYVCIAHDFF-YGDEPKFINAVLDKVSRKEEIK 160
               P  V+ISEYV +A  FF  G EP+F+NAVLD ++R+ + +
Sbjct: 119 S-DTPPRVVISEYVDVARAFFPEGREPQFVNAVLDHMAREAKPE 161


>gi|37527753|ref|NP_931098.1| transcription antitermination protein NusB [Photorhabdus
           luminescens subsp. laumondii TTO1]
 gi|39931724|sp|Q7N0J0|NUSB_PHOLL RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|36787189|emb|CAE16269.1| N utilization substance protein B [Photorhabdus luminescens subsp.
           laumondii TTO1]
          Length = 138

 Score =  162 bits (411), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 40/141 (28%), Positives = 64/141 (45%), Gaps = 13/141 (9%)

Query: 21  LAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRK 80
             AVQA+Y   + G S  ++  ++ +           E     VD+ +FR ++ GV    
Sbjct: 11  ECAVQAIYSWQLSGNSIADVELQFLS-----------EQDVTGVDVTYFRELLSGVAVNA 59

Query: 81  QHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYG 140
             +D L++  L+ +     L  +  +ILR  + EL     VP +V I+E + +A  F   
Sbjct: 60  AKLDALMAPYLSRQ--LEELGQVEKAILRIAMFELSYRDDVPYKVAINEAIELAKVFGAE 117

Query: 141 DEPKFINAVLDKVSRKEEIKR 161
           D  KF+N VLDK       KR
Sbjct: 118 DSHKFVNGVLDKSGPAVRRKR 138


>gi|238791410|ref|ZP_04635048.1| N utilization substance protein B [Yersinia intermedia ATCC 29909]
 gi|238729026|gb|EEQ20542.1| N utilization substance protein B [Yersinia intermedia ATCC 29909]
          Length = 138

 Score =  162 bits (411), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 39/141 (27%), Positives = 65/141 (46%), Gaps = 13/141 (9%)

Query: 21  LAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRK 80
             AVQALY   +      ++  ++ +           E     VD+ +FR ++ GV    
Sbjct: 11  ECAVQALYSWQLSKNDIADVELQFLS-----------EQDVKDVDISYFRELLSGVAVNA 59

Query: 81  QHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYG 140
             +D L++  L+ +     L  +  +ILR  + EL +   VP +V I+E + +A  F   
Sbjct: 60  TSLDALMAPFLSRQ--LEELGQVERAILRIALFELSKRDDVPYKVAINEAIELAKTFGAE 117

Query: 141 DEPKFINAVLDKVSRKEEIKR 161
           D  KF+N VLDKV+     K+
Sbjct: 118 DSHKFVNGVLDKVAPTVRKKK 138


>gi|33151658|ref|NP_873011.1| transcription antitermination protein NusB [Haemophilus ducreyi
           35000HP]
 gi|39931811|sp|Q7VNQ2|NUSB_HAEDU RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|33147879|gb|AAP95400.1| transcription termination factor [Haemophilus ducreyi 35000HP]
          Length = 137

 Score =  162 bits (411), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 47/145 (32%), Positives = 68/145 (46%), Gaps = 14/145 (9%)

Query: 10  LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF 69
           +K+S RR  AR  AVQALY   I   S  E+   + T           +     VDL +F
Sbjct: 1   MKVSPRRR-ARECAVQALYSWYISQNSIEEVELAFVT-----------DQDMKGVDLPYF 48

Query: 70  RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISE 129
           R ++ G     + ID  I   L      + +D I  +ILR    EL     VP +V+I+E
Sbjct: 49  RKLLRGTALYVEAIDHDIRPYLDRME--NDVDPIERTILRLATYELKYELDVPYKVVINE 106

Query: 130 YVCIAHDFFYGDEPKFINAVLDKVS 154
            + +A  F   D  K+IN +LDK++
Sbjct: 107 GIEVAKVFGSDDSHKYINGILDKLA 131


>gi|330721632|gb|EGG99649.1| Transcription termination protein NusB [gamma proteobacterium
           IMCC2047]
          Length = 153

 Score =  162 bits (411), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 48/160 (30%), Positives = 75/160 (46%), Gaps = 14/160 (8%)

Query: 4   QDNKKDLKLSHR-RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYL 62
           Q   K+ +LS   R  AR  A+QALYQ ++   S  EI  E+             ++   
Sbjct: 6   QPKPKNKRLSPALRRNARRLAMQALYQWELASSSLLEIEREFRE-----------DNNMQ 54

Query: 63  HVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVP 122
            VD ++F  ++H V   K  +D  I   L      S L  +  +ILR    EL++   VP
Sbjct: 55  KVDADYFTELLHRVPTLKTELDEQIKPLLDR--DISELTPVELTILRLSGYELLKRPDVP 112

Query: 123 VEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRS 162
             VII+E V +A  F   D  K++N +LDK++ +  ++  
Sbjct: 113 YRVIINEGVELAKTFGATDGHKYVNGILDKLAGRLRLEAK 152


>gi|120553778|ref|YP_958129.1| NusB antitermination factor [Marinobacter aquaeolei VT8]
 gi|166215695|sp|A1TYX3|NUSB_MARAV RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|120323627|gb|ABM17942.1| NusB antitermination factor [Marinobacter aquaeolei VT8]
          Length = 158

 Score =  162 bits (411), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 43/161 (26%), Positives = 76/161 (47%), Gaps = 13/161 (8%)

Query: 2   TIQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVY 61
           + Q  K     +  R  AR  A+Q LYQ        ++I +E+            V++  
Sbjct: 8   SPQPGKTGQPKAGDRRRARALAMQGLYQRHFSKTPISDIEAEFM-----------VDNDM 56

Query: 62  LHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSV 121
             VD+ +FR ++ GV   +  +D L+   L        +D +  +I+R G  EL     V
Sbjct: 57  SKVDIMYFRDLLRGVHREQAELDKLLEPFLDR--PLKEVDPVELAIVRLGAYELKHRIDV 114

Query: 122 PVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRS 162
           P +V+I+E + +A  F   +  KF+N++LDK+SR+  +  +
Sbjct: 115 PYKVVINEGIEMAKRFGGTEGHKFVNSILDKLSRRLRLAET 155


>gi|119945180|ref|YP_942860.1| NusB antitermination factor [Psychromonas ingrahamii 37]
 gi|229620369|sp|A1SUU6|NUSB_PSYIN RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|119863784|gb|ABM03261.1| NusB antitermination factor [Psychromonas ingrahamii 37]
          Length = 145

 Score =  162 bits (410), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 45/153 (29%), Positives = 80/153 (52%), Gaps = 14/153 (9%)

Query: 9   DLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEW 68
            +K + RR  AR +AVQA+YQ  I   S  +II ++ T           +      D+ +
Sbjct: 2   KMKPAERRR-ARQSAVQAIYQWQITKLSAGQIIEQFST-----------DQDLSKTDVPY 49

Query: 69  FRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIIS 128
           F+ ++ GV+ R   +D  +S  L+ K     +DM+  ++LR  + EL +   +P +V+++
Sbjct: 50  FKELLTGVIHRVDFLDEKLSPYLSRK--IEDVDMVDKAVLRLAMFELTQRTDIPHKVVLN 107

Query: 129 EYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKR 161
           E + +A DF   +  KF+N VLDK  R  +++ 
Sbjct: 108 EAIELAKDFATDESYKFVNGVLDKALRSLKLRE 140


>gi|307546178|ref|YP_003898657.1| transcription antitermination protein NusB [Halomonas elongata DSM
           2581]
 gi|307218202|emb|CBV43472.1| transcription antitermination protein NusB [Halomonas elongata DSM
           2581]
          Length = 166

 Score =  162 bits (410), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 43/156 (27%), Positives = 68/156 (43%), Gaps = 4/156 (2%)

Query: 6   NKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVE--SVYLH 63
            ++  +    R  AR  AVQ LYQ ++ G S   + +E+       D E       V   
Sbjct: 5   EREPSRAQQSRRAARELAVQGLYQWEMTGKSVATVEAEFRGQVADEDLEDHENWHKVMEL 64

Query: 64  VDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPV 123
            DL  F  ++ GV    + ID  ++  L        LD I  +ILR G  EL     VP 
Sbjct: 65  ADLALFHELLSGVAQHCEKIDEQLAPVLDR--RLEDLDAIELAILRLGTYELAYRLEVPY 122

Query: 124 EVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEI 159
             +I+E V +A  F   +  +++N +LDK++ +   
Sbjct: 123 RAVINEGVELAKSFGATEGHRYVNGILDKLAARLRA 158


>gi|238898983|ref|YP_002924665.1| transcription termination; L factor [Candidatus Hamiltonella
           defensa 5AT (Acyrthosiphon pisum)]
 gi|259514851|sp|C4K7H4|NUSB_HAMD5 RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|229466743|gb|ACQ68517.1| transcription termination; L factor [Candidatus Hamiltonella
           defensa 5AT (Acyrthosiphon pisum)]
          Length = 151

 Score =  162 bits (410), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 46/145 (31%), Positives = 67/145 (46%), Gaps = 14/145 (9%)

Query: 10  LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF 69
           +  S RR  AR   VQALY   +      E+        F AD E          D+ +F
Sbjct: 1   MNPSARRR-ARECVVQALYAWQVSQNDIAEV-----ELSFLADQETQG------ADIAYF 48

Query: 70  RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISE 129
           R ++ GV    + +D L++  L+ +  F  L  I  +ILR  + EL +   VP +V I+E
Sbjct: 49  RHVLLGVASDVEALDTLMTPYLSRQ--FQELGQIEKAILRLAMFELNKRDDVPYKVTINE 106

Query: 130 YVCIAHDFFYGDEPKFINAVLDKVS 154
            + +   F   D  KFIN VLDK +
Sbjct: 107 AIELGKTFGADDSHKFINGVLDKAA 131


>gi|15642265|ref|NP_231898.1| transcription antitermination protein NusB [Vibrio cholerae O1
           biovar El Tor str. N16961]
 gi|121586175|ref|ZP_01675966.1| N utilization substance protein B [Vibrio cholerae 2740-80]
 gi|121729760|ref|ZP_01682199.1| N utilization substance protein B [Vibrio cholerae V52]
 gi|147673228|ref|YP_001217781.1| transcription antitermination protein NusB [Vibrio cholerae O395]
 gi|153217373|ref|ZP_01951124.1| N utilization substance protein B [Vibrio cholerae 1587]
 gi|153803017|ref|ZP_01957603.1| N utilization substance protein B [Vibrio cholerae MZO-3]
 gi|153824256|ref|ZP_01976923.1| N utilization substance protein B [Vibrio cholerae B33]
 gi|153828248|ref|ZP_01980915.1| N utilization substance protein B [Vibrio cholerae 623-39]
 gi|227082391|ref|YP_002810942.1| N utilization substance protein B [Vibrio cholerae M66-2]
 gi|229507660|ref|ZP_04397165.1| transcription termination protein NusB [Vibrio cholerae BX 330286]
 gi|229512145|ref|ZP_04401624.1| transcription termination protein NusB [Vibrio cholerae B33]
 gi|229513908|ref|ZP_04403370.1| transcription termination protein NusB [Vibrio cholerae TMA 21]
 gi|229519280|ref|ZP_04408723.1| transcription termination protein NusB [Vibrio cholerae RC9]
 gi|229522212|ref|ZP_04411629.1| transcription termination protein NusB [Vibrio cholerae TM
           11079-80]
 gi|229528732|ref|ZP_04418122.1| transcription termination protein NusB [Vibrio cholerae 12129(1)]
 gi|229607164|ref|YP_002877812.1| transcription antitermination protein NusB [Vibrio cholerae
           MJ-1236]
 gi|254286062|ref|ZP_04961023.1| N utilization substance protein B [Vibrio cholerae AM-19226]
 gi|254849396|ref|ZP_05238746.1| transcription antitermination protein NusB [Vibrio cholerae MO10]
 gi|255747039|ref|ZP_05420984.1| transcription termination protein NusB [Vibrio cholera CIRS 101]
 gi|262161417|ref|ZP_06030527.1| transcription termination protein NusB [Vibrio cholerae INDRE 91/1]
 gi|262168266|ref|ZP_06035963.1| transcription termination protein NusB [Vibrio cholerae RC27]
 gi|262190236|ref|ZP_06048510.1| transcription termination protein NusB [Vibrio cholerae CT 5369-93]
 gi|297580910|ref|ZP_06942835.1| transcription antitermination protein NusB [Vibrio cholerae RC385]
 gi|298500359|ref|ZP_07010164.1| transcription antitermination factor NusB [Vibrio cholerae MAK 757]
 gi|22095970|sp|Q9KPU5|NUSB_VIBCH RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|172047603|sp|A5F5Z6|NUSB_VIBC3 RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|254772665|sp|C3LQ39|NUSB_VIBCM RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|9656829|gb|AAF95411.1| N utilization substance protein B [Vibrio cholerae O1 biovar El Tor
           str. N16961]
 gi|121549587|gb|EAX59611.1| N utilization substance protein B [Vibrio cholerae 2740-80]
 gi|121628511|gb|EAX60997.1| N utilization substance protein B [Vibrio cholerae V52]
 gi|124113619|gb|EAY32439.1| N utilization substance protein B [Vibrio cholerae 1587]
 gi|124121460|gb|EAY40203.1| N utilization substance protein B [Vibrio cholerae MZO-3]
 gi|126518222|gb|EAZ75447.1| N utilization substance protein B [Vibrio cholerae B33]
 gi|146315111|gb|ABQ19650.1| N utilization substance protein B [Vibrio cholerae O395]
 gi|148876337|gb|EDL74472.1| N utilization substance protein B [Vibrio cholerae 623-39]
 gi|150423972|gb|EDN15912.1| N utilization substance protein B [Vibrio cholerae AM-19226]
 gi|227010279|gb|ACP06491.1| N utilization substance protein B [Vibrio cholerae M66-2]
 gi|227014163|gb|ACP10373.1| N utilization substance protein B [Vibrio cholerae O395]
 gi|229332506|gb|EEN97992.1| transcription termination protein NusB [Vibrio cholerae 12129(1)]
 gi|229341137|gb|EEO06142.1| transcription termination protein NusB [Vibrio cholerae TM
           11079-80]
 gi|229343969|gb|EEO08944.1| transcription termination protein NusB [Vibrio cholerae RC9]
 gi|229349089|gb|EEO14046.1| transcription termination protein NusB [Vibrio cholerae TMA 21]
 gi|229352110|gb|EEO17051.1| transcription termination protein NusB [Vibrio cholerae B33]
 gi|229355165|gb|EEO20086.1| transcription termination protein NusB [Vibrio cholerae BX 330286]
 gi|229369819|gb|ACQ60242.1| transcription termination protein NusB [Vibrio cholerae MJ-1236]
 gi|254845101|gb|EET23515.1| transcription antitermination protein NusB [Vibrio cholerae MO10]
 gi|255735441|gb|EET90841.1| transcription termination protein NusB [Vibrio cholera CIRS 101]
 gi|262023158|gb|EEY41862.1| transcription termination protein NusB [Vibrio cholerae RC27]
 gi|262028728|gb|EEY47382.1| transcription termination protein NusB [Vibrio cholerae INDRE 91/1]
 gi|262033881|gb|EEY52347.1| transcription termination protein NusB [Vibrio cholerae CT 5369-93]
 gi|297534736|gb|EFH73572.1| transcription antitermination protein NusB [Vibrio cholerae RC385]
 gi|297541052|gb|EFH77106.1| transcription antitermination factor NusB [Vibrio cholerae MAK 757]
 gi|327484782|gb|AEA79189.1| Transcription termination protein NusB [Vibrio cholerae LMA3894-4]
          Length = 156

 Score =  162 bits (410), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 42/155 (27%), Positives = 71/155 (45%), Gaps = 6/155 (3%)

Query: 9   DLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHV---D 65
            +K + RR  AR  A+QA+Y   I   +   I  ++ T     + E       L     D
Sbjct: 4   SVKPAARRN-ARQFALQAIYSWQITKENVATIEEQFLTSGKYDEEEHRAAEPALAAPETD 62

Query: 66  LEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEV 125
           + +FR ++ GV+     +D  +   ++       LDM+  ++LR  + E+     VP +V
Sbjct: 63  VSYFRDLLAGVVLNHNELDSKLRPFVSR--PMQDLDMMELALLRLAMYEMTRREDVPYKV 120

Query: 126 IISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIK 160
           +I+E + +A  F   D  KF+N VLDK +     K
Sbjct: 121 VINEAIELAKVFAAEDSHKFVNGVLDKAAPHVRKK 155


>gi|32034438|ref|ZP_00134620.1| COG0781: Transcription termination factor [Actinobacillus
           pleuropneumoniae serovar 1 str. 4074]
 gi|126207689|ref|YP_001052914.1| transcription antitermination protein NusB [Actinobacillus
           pleuropneumoniae L20]
 gi|165975657|ref|YP_001651250.1| transcription antitermination protein NusB [Actinobacillus
           pleuropneumoniae serovar 3 str. JL03]
 gi|190149473|ref|YP_001967998.1| transcription antitermination protein NusB [Actinobacillus
           pleuropneumoniae serovar 7 str. AP76]
 gi|307245014|ref|ZP_07527111.1| N utilization substance protein B [Actinobacillus pleuropneumoniae
           serovar 1 str. 4074]
 gi|307247188|ref|ZP_07529239.1| N utilization substance protein B [Actinobacillus pleuropneumoniae
           serovar 2 str. S1536]
 gi|307249415|ref|ZP_07531406.1| N utilization substance protein B [Actinobacillus pleuropneumoniae
           serovar 4 str. M62]
 gi|307251733|ref|ZP_07533637.1| N utilization substance protein B [Actinobacillus pleuropneumoniae
           serovar 6 str. Femo]
 gi|307253967|ref|ZP_07535819.1| N utilization substance protein B [Actinobacillus pleuropneumoniae
           serovar 9 str. CVJ13261]
 gi|307256228|ref|ZP_07538015.1| N utilization substance protein B [Actinobacillus pleuropneumoniae
           serovar 10 str. D13039]
 gi|307258422|ref|ZP_07540163.1| N utilization substance protein B [Actinobacillus pleuropneumoniae
           serovar 11 str. 56153]
 gi|307260660|ref|ZP_07542352.1| N utilization substance protein B [Actinobacillus pleuropneumoniae
           serovar 12 str. 1096]
 gi|307262792|ref|ZP_07544419.1| N utilization substance protein B [Actinobacillus pleuropneumoniae
           serovar 13 str. N273]
 gi|166215658|sp|A3MYS3|NUSB_ACTP2 RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|238687518|sp|B0BSK4|NUSB_ACTPJ RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|238692374|sp|B3H044|NUSB_ACTP7 RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|126096481|gb|ABN73309.1| transcription antitermination protein NusB [Actinobacillus
           pleuropneumoniae serovar 5b str. L20]
 gi|165875758|gb|ABY68806.1| transcription termination factor [Actinobacillus pleuropneumoniae
           serovar 3 str. JL03]
 gi|189914604|gb|ACE60856.1| transcription antitermination protein NusB [Actinobacillus
           pleuropneumoniae serovar 7 str. AP76]
 gi|306854179|gb|EFM86387.1| N utilization substance protein B [Actinobacillus pleuropneumoniae
           serovar 1 str. 4074]
 gi|306856326|gb|EFM88478.1| N utilization substance protein B [Actinobacillus pleuropneumoniae
           serovar 2 str. S1536]
 gi|306858557|gb|EFM90622.1| N utilization substance protein B [Actinobacillus pleuropneumoniae
           serovar 4 str. M62]
 gi|306860819|gb|EFM92828.1| N utilization substance protein B [Actinobacillus pleuropneumoniae
           serovar 6 str. Femo]
 gi|306863171|gb|EFM95113.1| N utilization substance protein B [Actinobacillus pleuropneumoniae
           serovar 9 str. CVJ13261]
 gi|306865409|gb|EFM97305.1| N utilization substance protein B [Actinobacillus pleuropneumoniae
           serovar 10 str. D13039]
 gi|306867606|gb|EFM99453.1| N utilization substance protein B [Actinobacillus pleuropneumoniae
           serovar 11 str. 56153]
 gi|306869737|gb|EFN01522.1| N utilization substance protein B [Actinobacillus pleuropneumoniae
           serovar 12 str. 1096]
 gi|306871937|gb|EFN03654.1| N utilization substance protein B [Actinobacillus pleuropneumoniae
           serovar 13 str. N273]
          Length = 137

 Score =  161 bits (409), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 45/145 (31%), Positives = 68/145 (46%), Gaps = 14/145 (9%)

Query: 10  LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF 69
           +K+S RR  AR  AVQALY   +   S  E+   + T           +     VDL +F
Sbjct: 1   MKVSPRRR-ARECAVQALYSWYVSQNSVEEVELSFVT-----------DQDMNGVDLPYF 48

Query: 70  RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISE 129
           R ++ G +   + ID  +   L        +D I  +ILR    EL     VP +V+I+E
Sbjct: 49  RKLLRGTVLYVEAIDNDLRPFLDRAE--DEVDPIERTILRLSAYELKYELDVPYKVVINE 106

Query: 130 YVCIAHDFFYGDEPKFINAVLDKVS 154
            + +A  F   D  K+IN +LDK++
Sbjct: 107 GIEVAKVFGSDDSHKYINGILDKLA 131


>gi|258620990|ref|ZP_05716024.1| N utilization substance protein B [Vibrio mimicus VM573]
 gi|261211383|ref|ZP_05925671.1| transcription termination protein NusB [Vibrio sp. RC341]
 gi|262170766|ref|ZP_06038444.1| transcription termination protein NusB [Vibrio mimicus MB-451]
 gi|262404600|ref|ZP_06081155.1| transcription termination protein NusB [Vibrio sp. RC586]
 gi|258586378|gb|EEW11093.1| N utilization substance protein B [Vibrio mimicus VM573]
 gi|260839338|gb|EEX65964.1| transcription termination protein NusB [Vibrio sp. RC341]
 gi|261891842|gb|EEY37828.1| transcription termination protein NusB [Vibrio mimicus MB-451]
 gi|262349632|gb|EEY98770.1| transcription termination protein NusB [Vibrio sp. RC586]
          Length = 156

 Score =  161 bits (409), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 42/155 (27%), Positives = 71/155 (45%), Gaps = 6/155 (3%)

Query: 9   DLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHV---D 65
            +K + RR  AR  A+QA+Y   I   +   I  ++ T     + E       L     D
Sbjct: 4   SVKPAARRN-ARQFALQAIYSWQITKENVATIEEQFLTSGKYDEEEHRAAEPALAAPETD 62

Query: 66  LEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEV 125
           + +FR ++ GV+     +D  +   ++       LDM+  ++LR  + E+     VP +V
Sbjct: 63  VSYFRDLLAGVVLNHTELDSKLRPFVSR--PMQDLDMMELALLRLAMYEMTRREDVPYKV 120

Query: 126 IISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIK 160
           +I+E + +A  F   D  KF+N VLDK +     K
Sbjct: 121 VINEAIELAKVFAAEDSHKFVNGVLDKAAPHVRKK 155


>gi|149181858|ref|ZP_01860347.1| transcription antitermination protein NusB [Bacillus sp. SG-1]
 gi|148850397|gb|EDL64558.1| transcription antitermination protein NusB [Bacillus sp. SG-1]
          Length = 133

 Score =  161 bits (409), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 51/139 (36%), Positives = 73/139 (52%), Gaps = 16/139 (11%)

Query: 15  RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74
           +R  AR  A+QAL+Q+D+ G +  E ++         DT  D          E+   +++
Sbjct: 2   KRRTAREKALQALFQMDMSGMTADEALT-----NVYEDTPSD----------EYLENLVN 46

Query: 75  GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134
           G  + K+ ID LI   L EKWSF RL  +  +ILR  V EL+E   VP +V+I+E + IA
Sbjct: 47  GATENKEKIDGLIKENL-EKWSFDRLAKVDRNILRVAVYELLEADDVPSKVVINEAIEIA 105

Query: 135 HDFFYGDEPKFINAVLDKV 153
             +      KFIN VL KV
Sbjct: 106 KTYGDDQSGKFINGVLSKV 124


>gi|86137878|ref|ZP_01056454.1| transcription antitermination factor NusB [Roseobacter sp. MED193]
 gi|85825470|gb|EAQ45669.1| transcription antitermination factor NusB [Roseobacter sp. MED193]
          Length = 160

 Score =  161 bits (409), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 53/160 (33%), Positives = 87/160 (54%), Gaps = 6/160 (3%)

Query: 1   MTIQDN-KKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVES 59
           MT  D+  K    +  +  ARL AVQAL+Q++    +  ++I+E+E +RF A  E   + 
Sbjct: 1   MTHSDSAPKGNGKTQMKSAARLYAVQALFQMEHSDLTFDKVIAEFENHRFGAVYE---DG 57

Query: 60  VYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECH 119
                D   FR ++   ++ +  ID +    L  KW  +R+D  L ++ RA   E  +  
Sbjct: 58  EMAEGDTGLFRKLLKDAVNFQAPIDQMTDRALVAKWPIARIDPTLRALFRAAGAEFTQS- 116

Query: 120 SVPVEVIISEYVCIAHDFF-YGDEPKFINAVLDKVSRKEE 158
           + P +V+I+E+V IA  FF  G E KF+NAVLD ++R+ +
Sbjct: 117 NTPPKVVINEFVDIARAFFPEGKEAKFVNAVLDHMAREAK 156


>gi|88801237|ref|ZP_01116776.1| transcription antitermination protein NusB [Reinekea sp. MED297]
 gi|88776023|gb|EAR07259.1| transcription antitermination protein NusB [Reinekea sp. MED297]
          Length = 151

 Score =  161 bits (409), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 41/153 (26%), Positives = 69/153 (45%), Gaps = 13/153 (8%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           R  AR  A+QALYQ  +   S T+I +E+ T           ++     D ++F  ++ G
Sbjct: 11  RRKARRLAMQALYQWHVADQSVTQIEAEFLT-----------DNDVSKFDKDYFSEVLRG 59

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
           V   K  +D  +   +    +   L  +  +ILR G  E +    VP +VII+E V ++ 
Sbjct: 60  VAASKSELDSHVDKHIDR--ALKDLTPVELAILRMGAYEFLHRIDVPYKVIINEGVELSK 117

Query: 136 DFFYGDEPKFINAVLDKVSRKEEIKRSGCVSAI 168
            F   +  +F+N VLDK+++           A 
Sbjct: 118 TFGANEAHRFVNGVLDKLAQDLRSPEVQAGKAT 150


>gi|159044792|ref|YP_001533586.1| N utilization substance protein B-like protein [Dinoroseobacter
           shibae DFL 12]
 gi|157912552|gb|ABV93985.1| N utilization substance protein B-like protein [Dinoroseobacter
           shibae DFL 12]
          Length = 159

 Score =  161 bits (409), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 57/159 (35%), Positives = 84/159 (52%), Gaps = 6/159 (3%)

Query: 1   MTIQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESV 60
           M+ Q +K   K   +   ARL AVQAL+Q++  G S   +I E+E +RF A  E   E  
Sbjct: 1   MSKQSDKLAAKRQAK-SAARLYAVQALFQMEAAGQSADSVIREFEDHRFGAIYE---EGE 56

Query: 61  YLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHS 120
                +  FR  +   ++ +  ID L    L   W   R+D  L ++ RA   EL+    
Sbjct: 57  MAEGHVTLFRTTVGEAVNWQAKIDQLTDRALATAWPIDRIDPTLRALFRAAGAELV-RAD 115

Query: 121 VPVEVIISEYVCIAHDFF-YGDEPKFINAVLDKVSRKEE 158
            P +V+I+EYV +A  FF  G EPKF+NAVLD ++R+ +
Sbjct: 116 TPPKVVINEYVDLARAFFPDGKEPKFVNAVLDHMAREAK 154


>gi|83949450|ref|ZP_00958183.1| putative N utilization substance protein B [Roseovarius nubinhibens
           ISM]
 gi|83837349|gb|EAP76645.1| putative N utilization substance protein B [Roseovarius nubinhibens
           ISM]
          Length = 160

 Score =  161 bits (409), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 58/161 (36%), Positives = 82/161 (50%), Gaps = 4/161 (2%)

Query: 1   MTIQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESV 60
           M+ + N    +    R  ARL AVQAL+Q++    S  E+  E+  +RF A  E D    
Sbjct: 1   MSDRPNISGNQQRKMRSAARLYAVQALFQMEHSSLSVDEVRREFLEFRFGA--EFDDGID 58

Query: 61  YLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHS 120
               D E F  +I G +  +  ID +    L  KW   R+D  L ++ RA   EL+    
Sbjct: 59  MQEGDAEHFADVIEGAVQWQAKIDQMTDRALVAKWPIDRIDPTLRALFRAAGAELM-QEG 117

Query: 121 VPVEVIISEYVCIAHDFF-YGDEPKFINAVLDKVSRKEEIK 160
            P +V+I EYV IA  FF  G EPKF+NAVLD ++R+   +
Sbjct: 118 TPPKVVIVEYVDIAKSFFPEGREPKFVNAVLDFMAREARPE 158


>gi|163738657|ref|ZP_02146071.1| NusB antitermination factor [Phaeobacter gallaeciensis BS107]
 gi|163742958|ref|ZP_02150341.1| putative N utilization substance protein B [Phaeobacter
           gallaeciensis 2.10]
 gi|161383641|gb|EDQ08027.1| putative N utilization substance protein B [Phaeobacter
           gallaeciensis 2.10]
 gi|161387985|gb|EDQ12340.1| NusB antitermination factor [Phaeobacter gallaeciensis BS107]
          Length = 163

 Score =  161 bits (409), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 55/161 (34%), Positives = 87/161 (54%), Gaps = 9/161 (5%)

Query: 1   MTIQDN----KKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELD 56
           MT  D+    +K       +  +RL AVQAL+Q++    +  ++I E+E +RF A  + D
Sbjct: 1   MTTSDSQGAARKGSDKHKMKSASRLYAVQALFQMEHSNLTFDKVIVEFEDHRFGAVYDGD 60

Query: 57  VESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELI 116
                   D + FR +I G ++ +  ID +    L  KW  +R+D  L ++ RA   E +
Sbjct: 61  E---MAEGDTKSFRKLIEGAVNEQAKIDQMTDRALVAKWPIARIDPTLRALFRAAGAEFL 117

Query: 117 ECHSVPVEVIISEYVCIAHDFF-YGDEPKFINAVLDKVSRK 156
                P +V+I+E+V IA  FF  G EPKF+NAVLD ++R+
Sbjct: 118 AGK-TPPKVVINEFVDIARAFFPEGKEPKFVNAVLDHMARE 157


>gi|113460974|ref|YP_719041.1| transcription antitermination protein NusB [Haemophilus somnus
           129PT]
 gi|119390774|sp|Q0I3N5|NUSB_HAES1 RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|112823017|gb|ABI25106.1| N utilization substance protein B [Haemophilus somnus 129PT]
          Length = 144

 Score =  161 bits (409), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 49/155 (31%), Positives = 74/155 (47%), Gaps = 12/155 (7%)

Query: 6   NKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVD 65
            +K  KLS RR  AR  AVQ LY   I   +  EI   +          +D ++    VD
Sbjct: 2   TEKVKKLSPRRR-ARECAVQTLYSWAISKNAPEEIELNFI---------VDQDNEMKGVD 51

Query: 66  LEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEV 125
           + +FR +    +D  + +D +++  L        LD I C+ILR  V EL     VP +V
Sbjct: 52  MPYFRKLFRQTVDHVEIVDSIMAPYLDRDNV--ELDPIECAILRLAVYELKFELDVPYKV 109

Query: 126 IISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIK 160
           +I+E + +A  F   +  K+IN VLDK++     K
Sbjct: 110 VINEAIEVAKVFGAEESHKYINGVLDKIAPALSRK 144


>gi|229524269|ref|ZP_04413674.1| transcription termination protein NusB [Vibrio cholerae bv.
           albensis VL426]
 gi|229337850|gb|EEO02867.1| transcription termination protein NusB [Vibrio cholerae bv.
           albensis VL426]
          Length = 156

 Score =  161 bits (409), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 42/155 (27%), Positives = 71/155 (45%), Gaps = 6/155 (3%)

Query: 9   DLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHV---D 65
            +K + RR  AR  A+QA+Y   I   +   I  ++ T     + E       L     D
Sbjct: 4   SVKPAARRN-ARQFALQAIYSWQITKENVATIEEQFLTSGKYDEEEHRAAEPALAAPETD 62

Query: 66  LEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEV 125
           + +FR ++ GV+     +D  +   ++       LDM+  ++LR  + E+     VP +V
Sbjct: 63  VAYFRDLLAGVVLNHNELDSKLRPFVSR--PMQDLDMMELALLRLAMYEMTRREDVPYKV 120

Query: 126 IISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIK 160
           +I+E + +A  F   D  KF+N VLDK +     K
Sbjct: 121 VINEAIELAKVFAAEDSHKFVNGVLDKAAPHVRKK 155


>gi|261867676|ref|YP_003255598.1| transcription antitermination protein NusB [Aggregatibacter
           actinomycetemcomitans D11S-1]
 gi|261413008|gb|ACX82379.1| transcription antitermination factor NusB [Aggregatibacter
           actinomycetemcomitans D11S-1]
          Length = 141

 Score =  161 bits (409), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 45/144 (31%), Positives = 67/144 (46%), Gaps = 14/144 (9%)

Query: 11  KLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFR 70
           K+S RR  AR  AVQALY   I   S   +   + T           E     VD  +FR
Sbjct: 7   KISPRRR-ARECAVQALYSWAISKNSPEIVELNFIT-----------EQDMKGVDTPYFR 54

Query: 71  VIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEY 130
            +    ++  + +D  +   L    +   LD I  +ILR  V EL    +VP +V+I+E 
Sbjct: 55  KLFRQTVENVEAVDATMQCYLDR--TLEELDPIEKAILRLAVYELQFEANVPYKVVINEA 112

Query: 131 VCIAHDFFYGDEPKFINAVLDKVS 154
           + +A  F   +  K+IN VLDK++
Sbjct: 113 IEVAKVFGADESHKYINGVLDKIA 136


>gi|56696640|ref|YP_167001.1| transcription antitermination factor NusB [Ruegeria pomeroyi DSS-3]
 gi|56678377|gb|AAV95043.1| transcription antitermination factor NusB [Ruegeria pomeroyi DSS-3]
          Length = 160

 Score =  161 bits (409), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 52/160 (32%), Positives = 83/160 (51%), Gaps = 6/160 (3%)

Query: 1   MTIQDNKKDLKLSHR-RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVES 59
           M+  D  K +    + +  ARL AVQAL+Q++  G +   ++SE+  +RF A  E D   
Sbjct: 1   MSQSDTPKPVNRKRQMKSAARLYAVQALFQMEHSGQTVESVVSEFLEHRFGAVYEGDE-- 58

Query: 60  VYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECH 119
                D   FR ++   ++ +  ID +    L  KW  +R+D  L ++ RA   E  +  
Sbjct: 59  -LAEGDAALFRALVGDAVNNQALIDQMTDRALVAKWPIARIDPTLRALFRAAGAEFSQN- 116

Query: 120 SVPVEVIISEYVCIAHDFF-YGDEPKFINAVLDKVSRKEE 158
             P +V+I+E+V IA  FF  G E  F+NAVLD ++R+  
Sbjct: 117 DTPPKVVITEFVDIARAFFPEGRETSFVNAVLDHMAREAR 156


>gi|308185886|ref|YP_003930017.1| N utilization substance protein B [Pantoea vagans C9-1]
 gi|308056396|gb|ADO08568.1| N utilization substance protein B [Pantoea vagans C9-1]
          Length = 139

 Score =  161 bits (408), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 38/142 (26%), Positives = 62/142 (43%), Gaps = 13/142 (9%)

Query: 21  LAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRK 80
             AVQALY   +      ++  ++             E     VD+ +FR ++ GV    
Sbjct: 11  ECAVQALYSWQLSNNDIADVEYQFLA-----------EQDVKDVDITYFRELLSGVATNS 59

Query: 81  QHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYG 140
            ++D L+   L+ +     L  +  +ILR  + EL +   VP +V I+E + +A  F   
Sbjct: 60  AYLDGLMKPYLSRQ--LEELGQVEKAILRISLYELSKRDDVPYKVAINEGIELAKVFGAE 117

Query: 141 DEPKFINAVLDKVSRKEEIKRS 162
           D  KF+N VLDK   +    R 
Sbjct: 118 DSHKFVNGVLDKAGPQIRPNRK 139


>gi|254282810|ref|ZP_04957778.1| transcription antitermination factor NusB [gamma proteobacterium
           NOR51-B]
 gi|219679013|gb|EED35362.1| transcription antitermination factor NusB [gamma proteobacterium
           NOR51-B]
          Length = 149

 Score =  161 bits (408), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 47/145 (32%), Positives = 75/145 (51%), Gaps = 13/145 (8%)

Query: 12  LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71
           L+ RR  AR  A+QALYQ  +     TEI +E+            V++ + HVD E+F  
Sbjct: 8   LAARRRKARHYALQALYQWTMNRNDLTEIEAEFR-----------VDNDFSHVDGEYFHE 56

Query: 72  IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
           ++ G++     +D  +   L    S S LD +  ++LR G  EL +   VP +V I+E V
Sbjct: 57  LLTGIVRTADSLDESLVPLLDR--SISELDPVERNLLRLGAFELRDRIDVPYKVAINEAV 114

Query: 132 CIAHDFFYGDEPKFINAVLDKVSRK 156
            +A  F   D  +++N VLDK+++ 
Sbjct: 115 ALAKKFGATDSFRYVNGVLDKLAQD 139


>gi|212709167|ref|ZP_03317295.1| hypothetical protein PROVALCAL_00200 [Providencia alcalifaciens DSM
           30120]
 gi|212688079|gb|EEB47607.1| hypothetical protein PROVALCAL_00200 [Providencia alcalifaciens DSM
           30120]
          Length = 138

 Score =  161 bits (408), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 41/141 (29%), Positives = 64/141 (45%), Gaps = 13/141 (9%)

Query: 21  LAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRK 80
             AVQA+Y   + G    E+  E+             E     VD+ +FR +I G+ +  
Sbjct: 11  ECAVQAIYSWQLSGNPIAEVEYEFIA-----------EQDMSDVDVNYFRELISGIANNA 59

Query: 81  QHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYG 140
             +D L+S  L+ +     L  +  +ILR  + EL     VP +V I+E + +A  F   
Sbjct: 60  TKLDQLMSPYLSRQ--LEELGQVEKAILRVAMYELSYRQDVPFKVAINEGIELAKVFGAE 117

Query: 141 DEPKFINAVLDKVSRKEEIKR 161
           D  KF+N VLDK +     K+
Sbjct: 118 DSHKFVNGVLDKAAPVVRRKK 138


>gi|92114700|ref|YP_574628.1| NusB antitermination factor [Chromohalobacter salexigens DSM 3043]
 gi|119390757|sp|Q1QUC9|NUSB_CHRSD RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|91797790|gb|ABE59929.1| NusB antitermination factor [Chromohalobacter salexigens DSM 3043]
          Length = 166

 Score =  161 bits (408), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 51/157 (32%), Positives = 71/157 (45%), Gaps = 7/157 (4%)

Query: 14  HRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVE--SVYLHVDLEWFRV 71
             R  AR  AVQ LYQ  + G S T + SE+       D E       V    DL  F  
Sbjct: 13  QSRRAARELAVQGLYQWQMTGKSITAVESEFRAQIADEDLEDHENWHKVMGIADLALFHE 72

Query: 72  IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
           ++H V   ++ ID  I+  L        LD I  +ILR G  EL     VP   +I+E +
Sbjct: 73  LLHNVAADREAIDKTIAPLLDR--RLEDLDRIELAILRLGAYELKYRLEVPYRAVINEGI 130

Query: 132 CIAHDFFYGDEPKFINAVLDKVSRKEEIKRSGCVSAI 168
            +A  F   D  K++N +LDK++ +    RS  V+A 
Sbjct: 131 ELAKAFGATDGHKYVNGILDKLASRL---RSAEVAAR 164


>gi|297155776|gb|ADI05488.1| transcription antitermination protein NusB [Streptomyces
           bingchenggensis BCW-1]
          Length = 150

 Score =  161 bits (408), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 41/155 (26%), Positives = 68/155 (43%), Gaps = 9/155 (5%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           R  AR  A Q L++ D  G S   +++++  +    D +  V         E+   ++ G
Sbjct: 4   RNKARKRAFQILFEADQRGTSVQTVLADWIRHARTDDRQPPVS--------EYTMQLVEG 55

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
                  ID LIS+     W+  R+ ++  +ILR G  EL+     P  V+I E V +A 
Sbjct: 56  YAQYTARIDELISTYAV-GWTLDRMPVVDRNILRLGAYELVWEDETPDAVVIDEAVQLAK 114

Query: 136 DFFYGDEPKFINAVLDKVSRKEEIKRSGCVSAITQ 170
           +F   D P F+N +L +    +   R G     T+
Sbjct: 115 EFSTDDSPAFVNGLLGRFKELKPSLRRGEQQPTTE 149


>gi|238760660|ref|ZP_04621785.1| N utilization substance protein B [Yersinia aldovae ATCC 35236]
 gi|238701125|gb|EEP93717.1| N utilization substance protein B [Yersinia aldovae ATCC 35236]
          Length = 138

 Score =  161 bits (407), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 38/141 (26%), Positives = 64/141 (45%), Gaps = 13/141 (9%)

Query: 21  LAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRK 80
             AVQALY   +      ++  ++ +           E     VD+ +FR ++ GV    
Sbjct: 11  ECAVQALYSWQLSKNDIADVELQFLS-----------EQDVKDVDIAYFRELLSGVAVHA 59

Query: 81  QHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYG 140
             +D L+   L+ +     L  +  ++LR  + EL +   VP +V I+E + +A  F   
Sbjct: 60  ASLDALMEPFLSRQ--LEELGQVERAVLRIALFELSKRQDVPYKVAINEAIELAKTFGAE 117

Query: 141 DEPKFINAVLDKVSRKEEIKR 161
           D  KF+N VLDKV+     K+
Sbjct: 118 DSHKFVNGVLDKVAPTVRKKK 138


>gi|331006273|ref|ZP_08329591.1| Transcription termination protein NusB [gamma proteobacterium
           IMCC1989]
 gi|330419920|gb|EGG94268.1| Transcription termination protein NusB [gamma proteobacterium
           IMCC1989]
          Length = 152

 Score =  161 bits (407), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 51/159 (32%), Positives = 75/159 (47%), Gaps = 16/159 (10%)

Query: 6   NKKDLKLS-HRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHV 64
            K   K+S   R  AR   +QALYQ  + G +  EI +E+            V++   H 
Sbjct: 2   KKPPAKVSPATRRKARHFGMQALYQWSMTGAALNEIEAEFH-----------VDNDMTHT 50

Query: 65  DLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVE 124
           D ++F  ++H +  R   +D      L +  S   LD +  S+LR    EL     VP +
Sbjct: 51  DTDYFHELVHEIPARVTELDEAYFPHL-QDRSVEELDPVTLSLLRLATYELAHRIDVPYK 109

Query: 125 VIISEYVCIAHDFFYGDEPKFINAVLDKVS---RKEEIK 160
           V+I+E V +A  F   D  KFIN VLDK++   R  E+K
Sbjct: 110 VVINEAVSLAKKFGATDSFKFINGVLDKLAVSLRAVEVK 148


>gi|307129902|ref|YP_003881918.1| transcription antitermination protein [Dickeya dadantii 3937]
 gi|306527431|gb|ADM97361.1| transcription antitermination protein [Dickeya dadantii 3937]
          Length = 139

 Score =  161 bits (407), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 37/132 (28%), Positives = 62/132 (46%), Gaps = 13/132 (9%)

Query: 21  LAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRK 80
             AVQALY   +      ++  ++ +           E     VD+ +FR ++ GV  + 
Sbjct: 11  ECAVQALYSWQLSKNDIADVELQFLS-----------EQDVKGVDITYFRELLAGVATQA 59

Query: 81  QHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYG 140
           + +D  ++  L+ +     L  +  +ILR  V EL +   VP +V I+E + +A  F   
Sbjct: 60  EKLDAQMAPYLSRQ--LDELGQVERAILRLAVYELSKREDVPYKVAINEAIELAKVFGAE 117

Query: 141 DEPKFINAVLDK 152
           D  KF+N VLDK
Sbjct: 118 DSHKFVNGVLDK 129


>gi|317047151|ref|YP_004114799.1| NusB antitermination factor [Pantoea sp. At-9b]
 gi|316948768|gb|ADU68243.1| NusB antitermination factor [Pantoea sp. At-9b]
          Length = 139

 Score =  161 bits (407), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 38/142 (26%), Positives = 63/142 (44%), Gaps = 13/142 (9%)

Query: 21  LAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRK 80
             AVQALY   +      ++  ++             E     VD+ +FR ++ GV    
Sbjct: 11  ECAVQALYSWQLSNNDIADVEYQFLA-----------EQDVKDVDISYFRELLSGVATNS 59

Query: 81  QHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYG 140
            ++D L+   L+ +     L  +  +ILR  + EL +   VP +V I+E + +A  F   
Sbjct: 60  AYLDGLMKPYLSRQ--LEELGQVEKAILRISLFELSKRSDVPYKVAINEGIELAKVFGAE 117

Query: 141 DEPKFINAVLDKVSRKEEIKRS 162
           D  KF+N VLDK + +    R 
Sbjct: 118 DSHKFVNGVLDKAAPQIRPNRK 139


>gi|293392266|ref|ZP_06636600.1| transcription antitermination factor NusB [Aggregatibacter
           actinomycetemcomitans D7S-1]
 gi|290952800|gb|EFE02919.1| transcription antitermination factor NusB [Aggregatibacter
           actinomycetemcomitans D7S-1]
          Length = 141

 Score =  161 bits (407), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 45/144 (31%), Positives = 67/144 (46%), Gaps = 14/144 (9%)

Query: 11  KLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFR 70
           K+S RR  AR  AVQALY   I   S   +   + T           E     VD  +FR
Sbjct: 7   KISPRRR-ARECAVQALYSWAISKNSPEIVELNFIT-----------EQDMKGVDTPYFR 54

Query: 71  VIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEY 130
            +    ++  + +D  +   L    +   LD I  +ILR  V EL    +VP +V+I+E 
Sbjct: 55  KLFRQTVENVEAVDATMQYYLDR--TLEELDPIEKAILRLAVYELQFEANVPYKVVINEA 112

Query: 131 VCIAHDFFYGDEPKFINAVLDKVS 154
           + +A  F   +  K+IN VLDK++
Sbjct: 113 IEVAKVFGADESHKYINGVLDKIA 136


>gi|85704976|ref|ZP_01036076.1| transcription antitermination factor NusB [Roseovarius sp. 217]
 gi|85670298|gb|EAQ25159.1| transcription antitermination factor NusB [Roseovarius sp. 217]
          Length = 160

 Score =  161 bits (407), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 52/161 (32%), Positives = 85/161 (52%), Gaps = 4/161 (2%)

Query: 1   MTIQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESV 60
           MT        +    +  ARL AVQAL+Q++  G ++  +  E+  +RF A  E+D    
Sbjct: 1   MTTDPALSGNRKRQMKSAARLYAVQALFQMEHSGQTSDVVREEFLDFRFGA--EVDEGVD 58

Query: 61  YLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHS 120
               D++ FR ++   ++ +  ID +    L  KW  +R+D  L ++ RA   EL+E   
Sbjct: 59  MAEGDVDLFRKLLDDAVNWQAKIDQMTDRALVAKWPIARIDPTLRALFRAAGAELVES-D 117

Query: 121 VPVEVIISEYVCIAHDFF-YGDEPKFINAVLDKVSRKEEIK 160
            P +V+I EYV +A  F+  G E KF+NAVLD ++R+   +
Sbjct: 118 TPPKVVIMEYVDVAKAFYPAGKESKFVNAVLDHMAREARPE 158


>gi|114767590|ref|ZP_01446325.1| transcription antitermination factor NusB [Pelagibaca bermudensis
           HTCC2601]
 gi|114540368|gb|EAU43457.1| transcription antitermination factor NusB [Roseovarius sp.
           HTCC2601]
          Length = 163

 Score =  160 bits (406), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 56/164 (34%), Positives = 88/164 (53%), Gaps = 7/164 (4%)

Query: 1   MTIQDNKKDLKLSHRRG---IARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDV 57
           MT  D    L  + +R     +RL AVQALYQ++    +  ++  E+  YRF A+ +  V
Sbjct: 1   MTTPDTPPALSGNQKRRMKSASRLYAVQALYQMEAGDVAVEKVQREFVDYRFGAEIDEGV 60

Query: 58  ESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIE 117
           E   +  D+  F  I    ++ +  ID +    L  KW  +R+D  L ++ RA   EL++
Sbjct: 61  E--MVEGDVTLFGKITSSAVNWQAKIDQMTDRALVAKWPIARIDPTLRALFRAAGAELVD 118

Query: 118 CHSVPVEVIISEYVCIAHDFF-YGDEPKFINAVLDKVSRKEEIK 160
               P +V+ISEYV +A  FF  G EP+F+NAVLD ++R+   +
Sbjct: 119 S-DTPPKVVISEYVEVASAFFPEGREPRFVNAVLDHMAREARPE 161


>gi|327392955|dbj|BAK10377.1| N utilization substance protein B NusB [Pantoea ananatis AJ13355]
          Length = 139

 Score =  160 bits (406), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 38/142 (26%), Positives = 63/142 (44%), Gaps = 13/142 (9%)

Query: 21  LAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRK 80
             AVQALY   +      ++  ++             E     VD+ +FR ++ GV    
Sbjct: 11  ECAVQALYSWQLSNNDIADVEYQFLA-----------EQDVKDVDITYFRELLSGVATNS 59

Query: 81  QHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYG 140
            ++D L+   L+ +     L  +  +ILR  + EL +   VP +V I+E + +A  F   
Sbjct: 60  AYLDGLMKPYLSRQ--LEELGQVEKAILRISLYELSKRSDVPYKVAINEGIELAKVFGAE 117

Query: 141 DEPKFINAVLDKVSRKEEIKRS 162
           D  KF+N VLDK   +   +R 
Sbjct: 118 DSHKFVNGVLDKAGPQIRPQRK 139


>gi|84394359|ref|ZP_00993080.1| transcription antitermination protein NusB [Vibrio splendidus
           12B01]
 gi|86147433|ref|ZP_01065745.1| transcription antitermination protein NusB [Vibrio sp. MED222]
 gi|148976613|ref|ZP_01813300.1| transcription antitermination protein NusB [Vibrionales bacterium
           SWAT-3]
 gi|218710372|ref|YP_002417993.1| transcription antitermination protein NusB [Vibrio splendidus
           LGP32]
 gi|254772666|sp|B7VJA4|NUSB_VIBSL RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|84375018|gb|EAP91944.1| transcription antitermination protein NusB [Vibrio splendidus
           12B01]
 gi|85834726|gb|EAQ52872.1| transcription antitermination protein NusB [Vibrio sp. MED222]
 gi|145963964|gb|EDK29222.1| transcription antitermination protein NusB [Vibrionales bacterium
           SWAT-3]
 gi|218323391|emb|CAV19568.1| N utilization substance protein B homolog [Vibrio splendidus LGP32]
          Length = 155

 Score =  160 bits (406), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 38/155 (24%), Positives = 70/155 (45%), Gaps = 6/155 (3%)

Query: 9   DLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTE---LDVESVYLHVD 65
            +K + RR  AR  A+QA+Y   I   +   +  ++ +     + E    +        D
Sbjct: 4   SVKPAARRN-ARQFALQAIYSWQITKENIATVEEQFLSGGKYDEEEHHAAEPALAMPETD 62

Query: 66  LEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEV 125
           + +FR ++ GV      +D  +   ++       LD++  ++LR  + E+     VP +V
Sbjct: 63  VAYFRDLLTGVALSHMELDSKLRPFVSR--PMQDLDLMELALLRLAMYEMTRREDVPYKV 120

Query: 126 IISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIK 160
           +I+E + +A  F   D  KF+N VLDK +     K
Sbjct: 121 VINEAIELAKVFAAEDSHKFVNGVLDKAAPHVRKK 155


>gi|251790668|ref|YP_003005389.1| transcription antitermination protein NusB [Dickeya zeae Ech1591]
 gi|247539289|gb|ACT07910.1| NusB antitermination factor [Dickeya zeae Ech1591]
          Length = 139

 Score =  160 bits (406), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 37/132 (28%), Positives = 62/132 (46%), Gaps = 13/132 (9%)

Query: 21  LAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRK 80
             AVQALY   +      ++  ++ +           E     VD+ +FR ++ GV  + 
Sbjct: 11  ECAVQALYSWQLSKNDIADVELQFLS-----------EQDVKGVDIAYFRELLAGVATQA 59

Query: 81  QHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYG 140
           + +D  ++  L+ +     L  +  +ILR  V EL +   VP +V I+E + +A  F   
Sbjct: 60  EKLDAQMAPYLSRQ--LEELGQVERAILRLAVYELSKREDVPYKVAINEAIELAKVFGAE 117

Query: 141 DEPKFINAVLDK 152
           D  KF+N VLDK
Sbjct: 118 DSHKFVNGVLDK 129


>gi|188534655|ref|YP_001908452.1| transcription antitermination protein NusB [Erwinia tasmaniensis
           Et1/99]
 gi|238691979|sp|B2VHS8|NUSB_ERWT9 RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|188029697|emb|CAO97576.1| N utilization substance protein B [Erwinia tasmaniensis Et1/99]
          Length = 139

 Score =  160 bits (406), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 39/142 (27%), Positives = 63/142 (44%), Gaps = 13/142 (9%)

Query: 21  LAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRK 80
             AVQALY   I      ++  ++             E     VD+ +FR ++ GV    
Sbjct: 11  ECAVQALYSWQISKNDIADVEYQFLA-----------EQDVKDVDITYFRELVGGVATNS 59

Query: 81  QHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYG 140
            ++D L+   L+ +     L  +  +ILR  + EL +   VP +V I+E + +A  F   
Sbjct: 60  AYLDGLMKPYLSRQ--LEELGQVEKAILRISLFELSKRSDVPYKVAINEGIELAKVFGAE 117

Query: 141 DEPKFINAVLDKVSRKEEIKRS 162
           D  KF+N VLDK + +    R 
Sbjct: 118 DSHKFVNGVLDKAAPQIRPNRK 139


>gi|253576317|ref|ZP_04853647.1| transcription antitermination factor NusB [Paenibacillus sp. oral
           taxon 786 str. D14]
 gi|251844210|gb|EES72228.1| transcription antitermination factor NusB [Paenibacillus sp. oral
           taxon 786 str. D14]
          Length = 149

 Score =  160 bits (406), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 40/144 (27%), Positives = 71/144 (49%), Gaps = 2/144 (1%)

Query: 15  RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74
           +R +AR  AVQ++YQ+++      E ++   T     + E +VE   +     +   +++
Sbjct: 2   KRRLAREIAVQSMYQMEMNEVDANEAVTMLLTEA-MEENEGEVELSDVDATRAFALELVN 60

Query: 75  GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134
           G   RK  ID L+   L + W  SRL  +   +LR    E+I    VP +V ++E + +A
Sbjct: 61  GTWSRKDAIDSLLEDYL-KGWQISRLSKVDRQVLRLATYEMIFRDDVPGKVAVNEAIELA 119

Query: 135 HDFFYGDEPKFINAVLDKVSRKEE 158
             F   +  KF+N VL K+ +  +
Sbjct: 120 KHFGSPESGKFVNGVLGKMIQDID 143


>gi|291616524|ref|YP_003519266.1| NusB [Pantoea ananatis LMG 20103]
 gi|291151554|gb|ADD76138.1| NusB [Pantoea ananatis LMG 20103]
          Length = 139

 Score =  160 bits (406), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 38/142 (26%), Positives = 63/142 (44%), Gaps = 13/142 (9%)

Query: 21  LAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRK 80
             AVQALY   +      ++  ++             E     VD+ +FR ++ GV    
Sbjct: 11  ECAVQALYSWQLSNNDIADVEYQFLA-----------EQDVKDVDITYFRELLSGVATNS 59

Query: 81  QHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYG 140
            ++D L+   L+ +     L  +  +ILR  + EL +   VP +V I+E + +A  F   
Sbjct: 60  AYLDGLMKPYLSRQ--LEELGQVEKAILRVSLYELSKRSDVPYKVAINEGIELAKVFGAE 117

Query: 141 DEPKFINAVLDKVSRKEEIKRS 162
           D  KF+N VLDK   +   +R 
Sbjct: 118 DSHKFVNGVLDKAGPQIRPQRK 139


>gi|83858229|ref|ZP_00951751.1| transcription antitermination protein NusB [Oceanicaulis alexandrii
           HTCC2633]
 gi|83853052|gb|EAP90904.1| transcription antitermination protein NusB [Oceanicaulis alexandrii
           HTCC2633]
          Length = 158

 Score =  160 bits (406), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 52/133 (39%), Positives = 78/133 (58%), Gaps = 3/133 (2%)

Query: 24  VQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHI 83
           VQALYQ++  G     ++ E+  +RF  +   D    Y+  D ++F  ++ G++  +  +
Sbjct: 25  VQALYQMETSGSGAKAVVKEFRDHRFGYE---DEPGDYVETDEDFFENLVTGIVSIQADV 81

Query: 84  DLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEP 143
           D  IS  L E W  SRLD  + +ILRAG  ELI    VP  V+I+EYV +AH FF G EP
Sbjct: 82  DKRISGVLKEGWKLSRLDATVRAILRAGGYELIARKDVPPAVVINEYVDVAHAFFEGTEP 141

Query: 144 KFINAVLDKVSRK 156
            F+NA LD ++++
Sbjct: 142 GFVNATLDALAKQ 154


>gi|254452714|ref|ZP_05066151.1| transcription antitermination factor NusB [Octadecabacter
           antarcticus 238]
 gi|198267120|gb|EDY91390.1| transcription antitermination factor NusB [Octadecabacter
           antarcticus 238]
          Length = 146

 Score =  160 bits (406), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 52/144 (36%), Positives = 81/144 (56%), Gaps = 5/144 (3%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           +  +RL AVQAL+Q++    +   +  E+E +RF A  E D        D+  FR+++  
Sbjct: 2   KSASRLYAVQALFQMEHSSQTIESVTREFEDHRFGAVYEGDE---LAEGDVNLFRMLVET 58

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
            ++ +  ID +    L  KW   R+D  L ++ RA  +ELI     P +V ISEYV +A 
Sbjct: 59  AVNEQTKIDQMTDRALVAKWPLGRIDPTLRALFRAAGVELIGR-DTPPKVAISEYVDVAK 117

Query: 136 DFFY-GDEPKFINAVLDKVSRKEE 158
            FF  G+EPKF+NAVLD ++R+ +
Sbjct: 118 AFFDGGEEPKFVNAVLDHMARQAK 141


>gi|307293552|ref|ZP_07573396.1| NusB antitermination factor [Sphingobium chlorophenolicum L-1]
 gi|306879703|gb|EFN10920.1| NusB antitermination factor [Sphingobium chlorophenolicum L-1]
          Length = 148

 Score =  160 bits (406), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 55/145 (37%), Positives = 81/145 (55%), Gaps = 3/145 (2%)

Query: 12  LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71
            S  R  ARLAAVQALYQ+++ G     ++ E+  +R  A  E   +  Y   +  +F  
Sbjct: 4   RSKSRSAARLAAVQALYQLEMEGTPIHLLLHEFHQHRLGATIE---DVTYAQAEESFFDD 60

Query: 72  IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
           ++ GV  R++ ID LI++ L++ WS  RLD  +  ILRAG  EL+    V     ISEYV
Sbjct: 61  VVQGVDRRREEIDALIAARLSKGWSLERLDKPMRQILRAGTYELLARKDVATGTAISEYV 120

Query: 132 CIAHDFFYGDEPKFINAVLDKVSRK 156
            +AH F+   E  F+N +LD V++ 
Sbjct: 121 DVAHAFYDKREAGFVNGLLDAVAKD 145


>gi|261346385|ref|ZP_05974029.1| transcription antitermination factor NusB [Providencia rustigianii
           DSM 4541]
 gi|282565703|gb|EFB71238.1| transcription antitermination factor NusB [Providencia rustigianii
           DSM 4541]
          Length = 138

 Score =  160 bits (406), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 41/141 (29%), Positives = 63/141 (44%), Gaps = 13/141 (9%)

Query: 21  LAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRK 80
             AVQA+Y   + G    E+  E+             E     VD+ +FR +I G+    
Sbjct: 11  ECAVQAIYSWQLSGNPIAEVEYEFLA-----------EQDMSDVDVNYFRELISGIASNA 59

Query: 81  QHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYG 140
             +D L+S  L+ +     L  +  +ILR  + EL     VP +V I+E + +A  F   
Sbjct: 60  TKLDQLMSPYLSRQ--LEELGQVEKAILRVSMYELSYRQDVPFKVAINEGIELAKVFGAE 117

Query: 141 DEPKFINAVLDKVSRKEEIKR 161
           D  KF+N VLDK +     K+
Sbjct: 118 DSHKFVNGVLDKAAPVVRRKK 138


>gi|85058631|ref|YP_454333.1| transcription antitermination protein NusB [Sodalis glossinidius
           str. 'morsitans']
 gi|119390825|sp|Q2NV97|NUSB_SODGM RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|84779151|dbj|BAE73928.1| N utilization substance protein B [Sodalis glossinidius str.
           'morsitans']
          Length = 139

 Score =  160 bits (406), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 39/142 (27%), Positives = 63/142 (44%), Gaps = 13/142 (9%)

Query: 21  LAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRK 80
             AVQALY   +      +I  ++             E     VD+ +FR +  G     
Sbjct: 11  ECAVQALYSWQLSHNDIADIEVQFLA-----------EQDTSDVDVAYFRDLYAGAATNA 59

Query: 81  QHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYG 140
           Q +D L++  L+ +     L  +  ++LR  + EL +   VP +V I+E + +A  F   
Sbjct: 60  QELDKLMAPYLSRQ--LEELGHVERAVLRIALFELSKRQDVPYKVAINEAIELAKTFGAE 117

Query: 141 DEPKFINAVLDKVSRKEEIKRS 162
           +  KFIN VLDKV+ +    R 
Sbjct: 118 ESHKFINGVLDKVAPQIRPNRK 139


>gi|262042439|ref|ZP_06015599.1| transcription termination/antitermination factor NusB [Klebsiella
           pneumoniae subsp. rhinoscleromatis ATCC 13884]
 gi|259040214|gb|EEW41325.1| transcription termination/antitermination factor NusB [Klebsiella
           pneumoniae subsp. rhinoscleromatis ATCC 13884]
          Length = 139

 Score =  160 bits (405), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 36/134 (26%), Positives = 62/134 (46%), Gaps = 13/134 (9%)

Query: 21  LAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRK 80
             AVQALY   +      ++  ++             E    +VD+ +FR ++ GV    
Sbjct: 11  ECAVQALYSWQLSHNDIADVEYQFLA-----------EQDVKYVDVLYFRELLSGVATNS 59

Query: 81  QHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYG 140
            ++D L+   L+ +     L  +  ++LR  + EL +   VP +V I+E + +A  F   
Sbjct: 60  AYLDGLMKPYLSRQ--LEELGQVEKAVLRIALFELSKRDDVPYKVAINEAIELAKTFGAE 117

Query: 141 DEPKFINAVLDKVS 154
           D  KF+N VLDK +
Sbjct: 118 DSHKFVNGVLDKAA 131


>gi|152968941|ref|YP_001334050.1| transcription antitermination protein NusB [Klebsiella pneumoniae
           subsp. pneumoniae MGH 78578]
 gi|238893353|ref|YP_002918087.1| transcription antitermination protein NusB [Klebsiella pneumoniae
           NTUH-K2044]
 gi|330006911|ref|ZP_08305783.1| transcription antitermination factor NusB [Klebsiella sp. MS 92-3]
 gi|166215693|sp|A6T5E9|NUSB_KLEP7 RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|150953790|gb|ABR75820.1| transcription antitermination protein NusB [Klebsiella pneumoniae
           subsp. pneumoniae MGH 78578]
 gi|238545669|dbj|BAH62020.1| transcription antitermination protein [Klebsiella pneumoniae subsp.
           pneumoniae NTUH-K2044]
 gi|328535665|gb|EGF62114.1| transcription antitermination factor NusB [Klebsiella sp. MS 92-3]
          Length = 139

 Score =  160 bits (405), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 36/134 (26%), Positives = 61/134 (45%), Gaps = 13/134 (9%)

Query: 21  LAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRK 80
             AVQALY   +      ++  ++             E     VD+ +FR ++ GV    
Sbjct: 11  ECAVQALYSWQLSHNDIADVEYQFLA-----------EQDVKDVDVLYFRELLSGVATNS 59

Query: 81  QHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYG 140
            ++D L+   L+ +     L  +  ++LR  + EL +   VP +V I+E + +A  F   
Sbjct: 60  AYLDGLMKPYLSRQ--LEELGQVEKAVLRIALFELSKRDDVPYKVAINEAIELAKTFGAE 117

Query: 141 DEPKFINAVLDKVS 154
           D  KF+N VLDK +
Sbjct: 118 DSHKFVNGVLDKAA 131


>gi|261822526|ref|YP_003260632.1| transcription antitermination protein NusB [Pectobacterium wasabiae
           WPP163]
 gi|261606539|gb|ACX89025.1| NusB antitermination factor [Pectobacterium wasabiae WPP163]
          Length = 139

 Score =  160 bits (405), Expect = 7e-38,   Method: Composition-based stats.
 Identities = 37/134 (27%), Positives = 63/134 (47%), Gaps = 13/134 (9%)

Query: 21  LAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRK 80
             AVQALY   +      ++  ++ +           E     VD+ +FR ++ GV  + 
Sbjct: 11  ECAVQALYSWQLSKNDIADVEHQFLS-----------EQDVKDVDIAYFRELLAGVATQA 59

Query: 81  QHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYG 140
           + +D L++  L+       L  +  +ILR  + EL +   VP +V I+E + +A  F   
Sbjct: 60  EKLDQLMAPFLSRH--IDELGQVEKAILRLAMFELSKREDVPYKVAINEAIELAKTFGAE 117

Query: 141 DEPKFINAVLDKVS 154
           D  KF+N VLDK +
Sbjct: 118 DSHKFVNGVLDKAA 131


>gi|300721781|ref|YP_003711059.1| transcription termination; L factor [Xenorhabdus nematophila ATCC
           19061]
 gi|297628276|emb|CBJ88837.1| transcription termination; L factor [Xenorhabdus nematophila ATCC
           19061]
          Length = 138

 Score =  160 bits (405), Expect = 7e-38,   Method: Composition-based stats.
 Identities = 40/141 (28%), Positives = 63/141 (44%), Gaps = 13/141 (9%)

Query: 21  LAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRK 80
             AVQA+Y   +   S  +I  E+ +           E     VD+ +FR ++ GV    
Sbjct: 11  ECAVQAIYSWQLSNNSIADIELEFLS-----------EQDVTGVDITYFRELLSGVAVNA 59

Query: 81  QHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYG 140
             +D L++  L+ +     L  +  +ILR  + EL     VP +V I+E + +A  F   
Sbjct: 60  TKLDALMAPYLSRQ--LEELGQVEKAILRVAMFELSFRDDVPYKVAINEGIELAKTFGAE 117

Query: 141 DEPKFINAVLDKVSRKEEIKR 161
           D  KF+N VLDK       K+
Sbjct: 118 DSHKFVNGVLDKAGPAARRKK 138


>gi|259909279|ref|YP_002649635.1| transcription antitermination protein NusB [Erwinia pyrifoliae
           Ep1/96]
 gi|292487447|ref|YP_003530319.1| transcription antitermination protein NusB [Erwinia amylovora
           CFBP1430]
 gi|292898689|ref|YP_003538058.1| N utilization substance protein B [Erwinia amylovora ATCC 49946]
 gi|224964901|emb|CAX56424.1| N utilization substance protein B [Erwinia pyrifoliae Ep1/96]
 gi|283479334|emb|CAY75250.1| transcription antitermination protein NusB [Erwinia pyrifoliae DSM
           12163]
 gi|291198537|emb|CBJ45645.1| N utilization substance protein B [Erwinia amylovora ATCC 49946]
 gi|291552866|emb|CBA19911.1| transcription antitermination protein NusB [Erwinia amylovora
           CFBP1430]
 gi|310766819|gb|ADP11769.1| transcription antitermination protein NusB [Erwinia sp. Ejp617]
 gi|312171550|emb|CBX79808.1| transcription antitermination protein NusB [Erwinia amylovora ATCC
           BAA-2158]
          Length = 139

 Score =  160 bits (405), Expect = 7e-38,   Method: Composition-based stats.
 Identities = 39/142 (27%), Positives = 63/142 (44%), Gaps = 13/142 (9%)

Query: 21  LAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRK 80
             AVQALY   I      ++  ++             E     VD+ +FR ++ GV    
Sbjct: 11  ECAVQALYSWQISKNDIADVEYQFLA-----------EQDVKDVDITYFRELVGGVATHS 59

Query: 81  QHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYG 140
            ++D L+   L+ +     L  +  +ILR  + EL +   VP +V I+E + +A  F   
Sbjct: 60  AYLDDLMKPFLSRQ--LEELGQVEKAILRISLFELSKRSDVPYKVAINEGIELAKVFGAE 117

Query: 141 DEPKFINAVLDKVSRKEEIKRS 162
           D  KF+N VLDK + +    R 
Sbjct: 118 DSHKFVNGVLDKAAPQIRPNRK 139


>gi|271499577|ref|YP_003332602.1| NusB antitermination factor [Dickeya dadantii Ech586]
 gi|270343132|gb|ACZ75897.1| NusB antitermination factor [Dickeya dadantii Ech586]
          Length = 139

 Score =  160 bits (405), Expect = 7e-38,   Method: Composition-based stats.
 Identities = 37/132 (28%), Positives = 63/132 (47%), Gaps = 13/132 (9%)

Query: 21  LAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRK 80
             AVQALY   +      ++  ++ +           E     VD+ +FR ++ GV  + 
Sbjct: 11  ECAVQALYSWQLSKNDIADVELQFLS-----------EQDVKGVDIAYFRELLAGVATQA 59

Query: 81  QHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYG 140
           + +D  ++  L+ +   + L  +  +ILR  V EL +   VP +V I+E + +A  F   
Sbjct: 60  EKLDAQMAPYLSRQ--LNELGQVERAILRLAVYELSKREDVPYKVAINEAIELAKVFGAE 117

Query: 141 DEPKFINAVLDK 152
           D  KF+N VLDK
Sbjct: 118 DSHKFVNGVLDK 129


>gi|94496077|ref|ZP_01302655.1| NusB antitermination factor [Sphingomonas sp. SKA58]
 gi|94424256|gb|EAT09279.1| NusB antitermination factor [Sphingomonas sp. SKA58]
          Length = 148

 Score =  160 bits (405), Expect = 8e-38,   Method: Composition-based stats.
 Identities = 55/145 (37%), Positives = 80/145 (55%), Gaps = 3/145 (2%)

Query: 12  LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71
            S  R  ARLAAVQALYQ+++ G     ++ E+  +R  A  E   +  Y   +  +F  
Sbjct: 4   RSKSRSAARLAAVQALYQLEMEGTPLASLLHEFHQHRLGATIE---DVTYAQAEESFFDD 60

Query: 72  IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
           I+ GV  R+  ID L+++ L+  WS  RLD  +  ILRAG  EL+    V    +ISEYV
Sbjct: 61  IVTGVDKRRAEIDALVAARLSSGWSMDRLDKPMRQILRAGTYELLARKDVGTGTVISEYV 120

Query: 132 CIAHDFFYGDEPKFINAVLDKVSRK 156
            +AH F+   E  F+N +LD V++ 
Sbjct: 121 DVAHAFYDKREAGFVNGLLDGVAKD 145


>gi|88859180|ref|ZP_01133821.1| transcription termination factor [Pseudoalteromonas tunicata D2]
 gi|88819406|gb|EAR29220.1| transcription termination factor [Pseudoalteromonas tunicata D2]
          Length = 136

 Score =  160 bits (405), Expect = 8e-38,   Method: Composition-based stats.
 Identities = 41/150 (27%), Positives = 76/150 (50%), Gaps = 14/150 (9%)

Query: 10  LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF 69
           +K + RR  AR+ A+QA+Y   + G +  +I           + ++ +E+    +D+E+F
Sbjct: 1   MKPAARR-KARILALQAIYSWQVSGNAIADI-----------EQQMLLENDISKIDVEYF 48

Query: 70  RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISE 129
           + +  GV  + + +D+++S  L     +  +D +  +ILR    EL     VP +V I+E
Sbjct: 49  KDLACGVAVQHKVLDVILSPHLAR--PYEDIDFVEKAILRLSAYELKFREDVPYKVAINE 106

Query: 130 YVCIAHDFFYGDEPKFINAVLDKVSRKEEI 159
            + +A  F   D  KF+N VLDK  ++   
Sbjct: 107 GIELAKMFGAEDSHKFVNGVLDKAVKELRA 136


>gi|304395478|ref|ZP_07377361.1| NusB antitermination factor [Pantoea sp. aB]
 gi|304356772|gb|EFM21136.1| NusB antitermination factor [Pantoea sp. aB]
          Length = 139

 Score =  160 bits (405), Expect = 8e-38,   Method: Composition-based stats.
 Identities = 38/142 (26%), Positives = 63/142 (44%), Gaps = 13/142 (9%)

Query: 21  LAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRK 80
             AVQALY   +      ++  ++             E     VD+ +FR ++ GV    
Sbjct: 11  ECAVQALYSWQLSNNDIADVEYQFLA-----------EQDVKDVDITYFRELLSGVATNS 59

Query: 81  QHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYG 140
            ++D L+   L+ +     L  +  +ILR  + EL + + VP +V I+E + +A  F   
Sbjct: 60  AYLDGLMKPYLSRQ--LEELGQVEKAILRISLYELSKRNDVPYKVAINEGIELAKVFGAE 117

Query: 141 DEPKFINAVLDKVSRKEEIKRS 162
           D  KF+N VLDK   +    R 
Sbjct: 118 DSHKFVNGVLDKAGPQIRPTRK 139


>gi|322834070|ref|YP_004214097.1| NusB antitermination factor [Rahnella sp. Y9602]
 gi|321169271|gb|ADW74970.1| NusB antitermination factor [Rahnella sp. Y9602]
          Length = 137

 Score =  160 bits (405), Expect = 8e-38,   Method: Composition-based stats.
 Identities = 39/132 (29%), Positives = 64/132 (48%), Gaps = 13/132 (9%)

Query: 21  LAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRK 80
             AVQALY   +      ++  E+ T +   D           VD+ +FR ++ GV +  
Sbjct: 11  ECAVQALYSWQLSKNDIADVELEFLTEQDVKD-----------VDIAYFRELLAGVANSA 59

Query: 81  QHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYG 140
           + +D L++  L+ +     L  +  +ILR  + EL +   VP +V I+E + +A  F   
Sbjct: 60  EKLDALMAPYLSRQ--LDELGQVERAILRLALFELSKRQDVPYKVAINEAIELAKTFGAE 117

Query: 141 DEPKFINAVLDK 152
           D  KF+N VLDK
Sbjct: 118 DSHKFVNGVLDK 129


>gi|308174227|ref|YP_003920932.1| transcription termination factor NusB [Bacillus amyloliquefaciens
           DSM 7]
 gi|307607091|emb|CBI43462.1| transcription termination factor NusB [Bacillus amyloliquefaciens
           DSM 7]
 gi|328554172|gb|AEB24664.1| transcription antitermination protein NusB [Bacillus
           amyloliquefaciens TA208]
 gi|328912564|gb|AEB64160.1| transcription termination factor NusB [Bacillus amyloliquefaciens
           LL3]
          Length = 130

 Score =  159 bits (404), Expect = 8e-38,   Method: Composition-based stats.
 Identities = 40/144 (27%), Positives = 67/144 (46%), Gaps = 16/144 (11%)

Query: 15  RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74
           +R  AR  A+QAL+QID+   +  E I          +  LD E         +F  +++
Sbjct: 2   KRRTAREKALQALFQIDVSDIAPNEAI----------EHALDGEKTD-----AFFEQLVY 46

Query: 75  GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134
           GV++ +  +D +IS  L   W   R+  +  +ILR  V E++    +P  V ++E + +A
Sbjct: 47  GVIEHQVQLDEMISGHLV-NWKLDRIANVDRAILRLAVYEMVYTDDIPANVSLNEAIELA 105

Query: 135 HDFFYGDEPKFINAVLDKVSRKEE 158
             F      KF+N VL  +    E
Sbjct: 106 KRFGDDKAAKFVNGVLSNIKTDIE 129


>gi|254522951|ref|ZP_05135006.1| transcription antitermination factor NusB [Stenotrophomonas sp.
           SKA14]
 gi|219720542|gb|EED39067.1| transcription antitermination factor NusB [Stenotrophomonas sp.
           SKA14]
          Length = 159

 Score =  159 bits (404), Expect = 8e-38,   Method: Composition-based stats.
 Identities = 45/168 (26%), Positives = 68/168 (40%), Gaps = 20/168 (11%)

Query: 3   IQDNKKDLKLSHR-------RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTEL 55
               K   K   R       R  AR  AVQALY   I G +   +I+++           
Sbjct: 4   NTQGKPSGKPVRRDGVDPVLRSRARRRAVQALYAWQISGGNAQSLIAQFAH--------- 54

Query: 56  DVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLEL 115
             E      DL +F  ++HGV+D ++ ID  +   L        +D I  ++LR    EL
Sbjct: 55  --EQAREIADLAYFEALVHGVLDNRRDIDEALGPYLDRG--IEEVDAIERAVLRLAGYEL 110

Query: 116 IECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRSG 163
                VP  V+I+E +  A  F       ++N VLD+ + +     SG
Sbjct: 111 RYRLDVPYRVVINEAIESAKRFGSEHGHTYVNGVLDRAAVEWRKVESG 158


>gi|251792444|ref|YP_003007170.1| transcription antitermination protein NusB [Aggregatibacter
           aphrophilus NJ8700]
 gi|247533837|gb|ACS97083.1| transcription antitermination factor NusB [Aggregatibacter
           aphrophilus NJ8700]
          Length = 141

 Score =  159 bits (404), Expect = 9e-38,   Method: Composition-based stats.
 Identities = 44/144 (30%), Positives = 65/144 (45%), Gaps = 14/144 (9%)

Query: 11  KLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFR 70
           K+S RR  AR  AVQALY   I   S   +   + T           E     VD  +FR
Sbjct: 7   KISPRRR-ARECAVQALYSWAISQNSPELVELNFMT-----------EQDMNGVDKPYFR 54

Query: 71  VIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEY 130
            +    ++    ++  +   L    +   LD I  +ILR  V EL     VP +V+I+E 
Sbjct: 55  KLFRQTVENVDAVEHTMQGYLDR--TLDELDPIEKAILRLAVYELQFEADVPYKVVINEA 112

Query: 131 VCIAHDFFYGDEPKFINAVLDKVS 154
           + +A  F   +  K+IN VLDK++
Sbjct: 113 IEVAKVFGADESHKYINGVLDKIA 136


>gi|152998045|ref|YP_001342880.1| NusB antitermination factor [Marinomonas sp. MWYL1]
 gi|226738905|sp|A6W2L6|NUSB_MARMS RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|150838969|gb|ABR72945.1| NusB antitermination factor [Marinomonas sp. MWYL1]
          Length = 174

 Score =  159 bits (404), Expect = 9e-38,   Method: Composition-based stats.
 Identities = 44/162 (27%), Positives = 76/162 (46%), Gaps = 13/162 (8%)

Query: 2   TIQDNKKDLKLSHR--RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVES 59
           T    +KD K S    R  +R  A+QA+YQ  +   + +EI +++          +D + 
Sbjct: 11  TPAPKRKDKKPSRSQLRSASRRLALQAVYQWQMNKTAVSEIETQFV---------IDQDR 61

Query: 60  VYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECH 119
                D  +FR ++ GV    + +D L    L      S LD I  +++R G  EL +  
Sbjct: 62  DMDSCDKVYFRELLQGVTASAKKLDTLFEELLDR--PLSELDPIELAVMRIGSYELSQRL 119

Query: 120 SVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKR 161
            VP  V I+E V +A  F   +  K++N +LDK++++   + 
Sbjct: 120 DVPYRVAINESVELAKGFGATESHKYVNGILDKLAQRVRREE 161


>gi|311280694|ref|YP_003942925.1| NusB antitermination factor [Enterobacter cloacae SCF1]
 gi|308749889|gb|ADO49641.1| NusB antitermination factor [Enterobacter cloacae SCF1]
          Length = 139

 Score =  159 bits (404), Expect = 9e-38,   Method: Composition-based stats.
 Identities = 36/142 (25%), Positives = 63/142 (44%), Gaps = 13/142 (9%)

Query: 21  LAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRK 80
             AVQALY   +      ++  ++   +   D           VD+ +FR ++ GV    
Sbjct: 11  ECAVQALYSWQLSKNDIADVEYQFLAEQDVKD-----------VDVLYFRELLSGVATNS 59

Query: 81  QHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYG 140
            ++D L+   L+ +     L  +  ++LR  + EL +   VP +V I+E + +A  F   
Sbjct: 60  AYLDGLMKPYLSRQ--LEELGQVEKAVLRIALFELSKRDDVPYKVAINEAIELAKTFGAE 117

Query: 141 DEPKFINAVLDKVSRKEEIKRS 162
           D  KF+N VLDK +      + 
Sbjct: 118 DSHKFVNGVLDKAAPAIRPHKK 139


>gi|294010264|ref|YP_003543724.1| N utilization substance protein B [Sphingobium japonicum UT26S]
 gi|292673594|dbj|BAI95112.1| N utilization substance protein B [Sphingobium japonicum UT26S]
          Length = 148

 Score =  159 bits (404), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 55/145 (37%), Positives = 80/145 (55%), Gaps = 3/145 (2%)

Query: 12  LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71
            S  R  ARLAAVQALYQ+++ G     ++ E+  +R  A  E   +  Y   +  +F  
Sbjct: 4   RSKSRSAARLAAVQALYQLEMEGTPLHLLLHEFHQHRLGATIE---DVTYAQAEESFFDD 60

Query: 72  IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
           ++ GV  R++ ID LI + L++ WS  RLD  +  ILRAG  EL+    V     ISEYV
Sbjct: 61  VVQGVDRRREEIDALIVARLSKGWSLERLDKPMRQILRAGTYELLARKDVATGTAISEYV 120

Query: 132 CIAHDFFYGDEPKFINAVLDKVSRK 156
            +AH F+   E  F+N +LD V++ 
Sbjct: 121 DVAHAFYDKREAGFVNGLLDAVAKD 145


>gi|126666701|ref|ZP_01737678.1| transcription antitermination protein NusB [Marinobacter sp. ELB17]
 gi|126628746|gb|EAZ99366.1| transcription antitermination protein NusB [Marinobacter sp. ELB17]
          Length = 166

 Score =  159 bits (404), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 44/158 (27%), Positives = 74/158 (46%), Gaps = 13/158 (8%)

Query: 2   TIQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVY 61
           T    K     +  R  AR  A+Q LYQ      + + I +E+            V++  
Sbjct: 16  TSSPGKSAQPKAGDRRRARGMAMQGLYQRHFSKSAISNIEAEFM-----------VDNDM 64

Query: 62  LHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSV 121
             VDL +FR ++HG    +  +D LI   L        +D +  +I+R G  EL     V
Sbjct: 65  SKVDLLYFRDLLHGTSREQAELDRLIEPFLDR--PLQEVDPVELAIVRLGAYELKFRLDV 122

Query: 122 PVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEI 159
           P +V+I+E + +A  F   +  +F+N++LDK+SR+  +
Sbjct: 123 PYKVVINEGIEMAKRFGGTEGHRFVNSILDKLSRRLRL 160


>gi|1303915|dbj|BAA12571.1| YqhZ [Bacillus subtilis]
          Length = 131

 Score =  159 bits (404), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 37/139 (26%), Positives = 61/139 (43%), Gaps = 16/139 (11%)

Query: 15  RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74
           +R  AR  A+QAL+QID+   +  E I                          +F  ++H
Sbjct: 2   KRRTAREKALQALFQIDVSDIAVNEAIEHALDEEKTD---------------PFFEQLVH 46

Query: 75  GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134
           GV++ +  +D +IS  L   W   R+  +  +ILR    E+     +PV V ++E + +A
Sbjct: 47  GVLEHQDQLDEMISKHLV-NWKLDRIANVDRAILRLAAYEMAYAEDIPVNVSMNEAIELA 105

Query: 135 HDFFYGDEPKFINAVLDKV 153
             F      KF+N VL  +
Sbjct: 106 KRFGDDKATKFVNGVLSNI 124


>gi|290474696|ref|YP_003467576.1| transcription termination; L factor [Xenorhabdus bovienii SS-2004]
 gi|289174009|emb|CBJ80796.1| transcription termination; L factor [Xenorhabdus bovienii SS-2004]
          Length = 138

 Score =  159 bits (404), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 37/141 (26%), Positives = 62/141 (43%), Gaps = 13/141 (9%)

Query: 21  LAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRK 80
             AVQA+Y   +      ++  ++ +           E     VD+ +FR ++ GV    
Sbjct: 11  ECAVQAIYSWQLSKNDIADVEFQFLS-----------EQDVTGVDITYFRELLTGVAVNA 59

Query: 81  QHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYG 140
             +D L++  L+ +     L  +  +ILR  + EL     VP +V I+E + +A  F   
Sbjct: 60  AKLDALMAPYLSRQ--LEELGQVEKAILRVAMFELSFRDDVPYKVAINEGIELAKTFGAE 117

Query: 141 DEPKFINAVLDKVSRKEEIKR 161
           D  KF+N VLDK       K+
Sbjct: 118 DSHKFVNGVLDKAGPAARKKK 138


>gi|253990956|ref|YP_003042312.1| transcription antitermination protein NusB [Photorhabdus
           asymbiotica subsp. asymbiotica ATCC 43949]
 gi|253782406|emb|CAQ85570.1| N utilization substance protein B [Photorhabdus asymbiotica]
          Length = 139

 Score =  159 bits (403), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 37/132 (28%), Positives = 61/132 (46%), Gaps = 13/132 (9%)

Query: 21  LAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRK 80
             AVQA+Y   + G    ++  ++ +           E     VD+ +FR ++ GV    
Sbjct: 11  ECAVQAIYSWQLSGNDIADVELQFLS-----------EQDVTGVDVTYFRELLSGVAVNA 59

Query: 81  QHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYG 140
             +D L++  L+ +     L  +  +ILR  + EL     VP +V I+E + +A  F   
Sbjct: 60  VKLDALMAPYLSRQ--LEELGQVEKAILRVAMFELSYRDDVPYKVAINEAIELAKVFGAE 117

Query: 141 DEPKFINAVLDK 152
           D  KF+N VLDK
Sbjct: 118 DSHKFVNGVLDK 129


>gi|22124909|ref|NP_668332.1| transcription antitermination protein NusB [Yersinia pestis KIM 10]
 gi|45440599|ref|NP_992138.1| transcription antitermination protein NusB [Yersinia pestis biovar
           Microtus str. 91001]
 gi|51595286|ref|YP_069477.1| transcription antitermination protein NusB [Yersinia
           pseudotuberculosis IP 32953]
 gi|108808666|ref|YP_652582.1| transcription antitermination protein NusB [Yersinia pestis
           Antiqua]
 gi|108811072|ref|YP_646839.1| transcription antitermination protein NusB [Yersinia pestis
           Nepal516]
 gi|145600075|ref|YP_001164151.1| transcription antitermination protein NusB [Yersinia pestis
           Pestoides F]
 gi|149364973|ref|ZP_01887008.1| N utilization substance protein B [Yersinia pestis CA88-4125]
 gi|153950126|ref|YP_001402075.1| transcription antitermination protein NusB [Yersinia
           pseudotuberculosis IP 31758]
 gi|162421924|ref|YP_001607525.1| transcription antitermination protein NusB [Yersinia pestis Angola]
 gi|165926545|ref|ZP_02222377.1| transcription antitermination factor NusB [Yersinia pestis biovar
           Orientalis str. F1991016]
 gi|165935993|ref|ZP_02224563.1| transcription antitermination factor NusB [Yersinia pestis biovar
           Orientalis str. IP275]
 gi|166011125|ref|ZP_02232023.1| transcription antitermination factor NusB [Yersinia pestis biovar
           Antiqua str. E1979001]
 gi|166212965|ref|ZP_02239000.1| transcription antitermination factor NusB [Yersinia pestis biovar
           Antiqua str. B42003004]
 gi|167398502|ref|ZP_02304026.1| transcription antitermination factor NusB [Yersinia pestis biovar
           Antiqua str. UG05-0454]
 gi|167421645|ref|ZP_02313398.1| transcription antitermination factor NusB [Yersinia pestis biovar
           Orientalis str. MG05-1020]
 gi|167423478|ref|ZP_02315231.1| transcription antitermination factor NusB [Yersinia pestis biovar
           Mediaevalis str. K1973002]
 gi|170025473|ref|YP_001721978.1| transcription antitermination protein NusB [Yersinia
           pseudotuberculosis YPIII]
 gi|186894303|ref|YP_001871415.1| transcription antitermination protein NusB [Yersinia
           pseudotuberculosis PB1/+]
 gi|218930211|ref|YP_002348086.1| transcription antitermination protein NusB [Yersinia pestis CO92]
 gi|229838786|ref|ZP_04458945.1| transcription antitermination protein [Yersinia pestis biovar
           Orientalis str. PEXU2]
 gi|229896060|ref|ZP_04511230.1| transcription antitermination protein [Yersinia pestis Pestoides A]
 gi|229899354|ref|ZP_04514497.1| transcription antitermination protein [Yersinia pestis biovar
           Orientalis str. India 195]
 gi|229901299|ref|ZP_04516421.1| transcription antitermination protein [Yersinia pestis Nepal516]
 gi|270489488|ref|ZP_06206562.1| transcription antitermination factor NusB [Yersinia pestis KIM D27]
 gi|294504909|ref|YP_003568971.1| transcription antitermination protein NusB [Yersinia pestis
           Z176003]
 gi|22095956|sp|Q8ZC42|NUSB_YERPE RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|81640219|sp|Q66DV7|NUSB_YERPS RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|119390849|sp|Q1C4I5|NUSB_YERPA RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|119390850|sp|Q1CL91|NUSB_YERPN RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|166215730|sp|A4TPG6|NUSB_YERPP RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|166918813|sp|A7FLE7|NUSB_YERP3 RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|238687286|sp|A9R2J9|NUSB_YERPG RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|238688409|sp|B1JIE1|NUSB_YERPY RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|238691415|sp|B2K6T4|NUSB_YERPB RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|21957745|gb|AAM84583.1|AE013703_13 transcription termination; L factor [Yersinia pestis KIM 10]
 gi|45435456|gb|AAS61015.1| N utilization substance protein B [Yersinia pestis biovar Microtus
           str. 91001]
 gi|51588568|emb|CAH20176.1| transcription termination; L factor [Yersinia pseudotuberculosis IP
           32953]
 gi|108774720|gb|ABG17239.1| N utilization substance protein B [Yersinia pestis Nepal516]
 gi|108780579|gb|ABG14637.1| N utilization substance protein B [Yersinia pestis Antiqua]
 gi|115348822|emb|CAL21776.1| N utilization substance protein B [Yersinia pestis CO92]
 gi|145211771|gb|ABP41178.1| N utilization substance protein B [Yersinia pestis Pestoides F]
 gi|149291386|gb|EDM41460.1| N utilization substance protein B [Yersinia pestis CA88-4125]
 gi|152961621|gb|ABS49082.1| transcription antitermination factor NusB [Yersinia
           pseudotuberculosis IP 31758]
 gi|162354739|gb|ABX88687.1| transcription antitermination factor NusB [Yersinia pestis Angola]
 gi|165916138|gb|EDR34745.1| transcription antitermination factor NusB [Yersinia pestis biovar
           Orientalis str. IP275]
 gi|165921473|gb|EDR38670.1| transcription antitermination factor NusB [Yersinia pestis biovar
           Orientalis str. F1991016]
 gi|165990125|gb|EDR42426.1| transcription antitermination factor NusB [Yersinia pestis biovar
           Antiqua str. E1979001]
 gi|166205752|gb|EDR50232.1| transcription antitermination factor NusB [Yersinia pestis biovar
           Antiqua str. B42003004]
 gi|166960564|gb|EDR56585.1| transcription antitermination factor NusB [Yersinia pestis biovar
           Orientalis str. MG05-1020]
 gi|167051006|gb|EDR62414.1| transcription antitermination factor NusB [Yersinia pestis biovar
           Antiqua str. UG05-0454]
 gi|167057648|gb|EDR67394.1| transcription antitermination factor NusB [Yersinia pestis biovar
           Mediaevalis str. K1973002]
 gi|169752007|gb|ACA69525.1| NusB antitermination factor [Yersinia pseudotuberculosis YPIII]
 gi|186697329|gb|ACC87958.1| NusB antitermination factor [Yersinia pseudotuberculosis PB1/+]
 gi|229681228|gb|EEO77322.1| transcription antitermination protein [Yersinia pestis Nepal516]
 gi|229687756|gb|EEO79829.1| transcription antitermination protein [Yersinia pestis biovar
           Orientalis str. India 195]
 gi|229695152|gb|EEO85199.1| transcription antitermination protein [Yersinia pestis biovar
           Orientalis str. PEXU2]
 gi|229700983|gb|EEO89012.1| transcription antitermination protein [Yersinia pestis Pestoides A]
 gi|262362975|gb|ACY59696.1| transcription antitermination protein NusB [Yersinia pestis
           D106004]
 gi|262366895|gb|ACY63452.1| transcription antitermination protein NusB [Yersinia pestis
           D182038]
 gi|270337992|gb|EFA48769.1| transcription antitermination factor NusB [Yersinia pestis KIM D27]
 gi|294355368|gb|ADE65709.1| transcription antitermination protein NusB [Yersinia pestis
           Z176003]
 gi|320016368|gb|ADV99939.1| transcription antitermination protein [Yersinia pestis biovar
           Medievalis str. Harbin 35]
          Length = 138

 Score =  159 bits (403), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 37/134 (27%), Positives = 64/134 (47%), Gaps = 13/134 (9%)

Query: 21  LAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRK 80
             AVQALY   +      ++  ++ + +   D           VD+ +FR ++ GV    
Sbjct: 11  ECAVQALYSWQLSKNDIADVELQFLSEQDVKD-----------VDIAYFRELLSGVAVNA 59

Query: 81  QHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYG 140
             +D L++  L+ +     L  +  ++LR  + EL +   VP +V I+E + +A  F   
Sbjct: 60  ASLDALMAPFLSRQ--LEELGQVERAVLRIALFELSKRDDVPYKVAINEAIELAKTFGAE 117

Query: 141 DEPKFINAVLDKVS 154
           D  KF+N VLDKV+
Sbjct: 118 DSHKFVNGVLDKVA 131


>gi|154686696|ref|YP_001421857.1| transcription antitermination protein NusB [Bacillus
           amyloliquefaciens FZB42]
 gi|166215663|sp|A7Z6K0|NUSB_BACA2 RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|154352547|gb|ABS74626.1| NusB [Bacillus amyloliquefaciens FZB42]
          Length = 130

 Score =  159 bits (403), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 39/144 (27%), Positives = 67/144 (46%), Gaps = 16/144 (11%)

Query: 15  RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74
           +R  AR  A+QAL+QID+   +  + I          +  LD E         +F  +++
Sbjct: 2   KRRTAREKALQALFQIDVSDIAPNDAI----------EHALDGEKTD-----AFFEQLVY 46

Query: 75  GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134
           GV++ +  +D +IS  L   W   R+  +  +ILR  V E++    +P  V ++E + +A
Sbjct: 47  GVIEHQVQLDEMISGHLV-NWKLDRIANVDRAILRLAVYEMVYSDDIPANVSLNEAIELA 105

Query: 135 HDFFYGDEPKFINAVLDKVSRKEE 158
             F      KF+N VL  +    E
Sbjct: 106 KRFGDDKAAKFVNGVLSNIKTDIE 129


>gi|296101538|ref|YP_003611684.1| transcription antitermination protein NusB [Enterobacter cloacae
           subsp. cloacae ATCC 13047]
 gi|295055997|gb|ADF60735.1| transcription antitermination protein NusB [Enterobacter cloacae
           subsp. cloacae ATCC 13047]
          Length = 139

 Score =  159 bits (403), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 36/142 (25%), Positives = 62/142 (43%), Gaps = 13/142 (9%)

Query: 21  LAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRK 80
             AVQALY   +      ++  ++ +           E     VD+ +FR ++ GV    
Sbjct: 11  ECAVQALYSWQLSQNDIADVEYQFLS-----------EQDVKDVDVLYFRELLSGVATNS 59

Query: 81  QHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYG 140
            ++D L+   L+       L  +  ++LR  + EL +   VP +V I+E + +A  F   
Sbjct: 60  AYLDGLMKPYLSR--LLEELGQVEKAVLRIALFELSKRDDVPYKVAINEAIELAKTFGAE 117

Query: 141 DEPKFINAVLDKVSRKEEIKRS 162
           D  KF+N VLDK +      + 
Sbjct: 118 DSHKFVNGVLDKAAPAIRPHKK 139


>gi|227327507|ref|ZP_03831531.1| transcription antitermination protein NusB [Pectobacterium
           carotovorum subsp. carotovorum WPP14]
          Length = 139

 Score =  159 bits (403), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 38/134 (28%), Positives = 65/134 (48%), Gaps = 13/134 (9%)

Query: 21  LAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRK 80
             AVQALY   +      ++  ++ +           E     VD+ +FR ++ GV  + 
Sbjct: 11  ECAVQALYSWQLSKNDIADVEHQFLS-----------EQDVKDVDITYFRELLAGVATQA 59

Query: 81  QHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYG 140
           + +D L++  L+ +     L  +  +ILR  + EL +   VP +V I+E + +A  F   
Sbjct: 60  EKLDQLMAPFLSRQ--IEELGQVEKAILRLAMFELSKREDVPYKVAINEAIELAKIFGAE 117

Query: 141 DEPKFINAVLDKVS 154
           D  KF+N VLDKV+
Sbjct: 118 DSHKFVNGVLDKVA 131


>gi|88704433|ref|ZP_01102147.1| N utilization substance protein B [Congregibacter litoralis KT71]
 gi|88701484|gb|EAQ98589.1| N utilization substance protein B [Congregibacter litoralis KT71]
          Length = 150

 Score =  159 bits (403), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 52/148 (35%), Positives = 77/148 (52%), Gaps = 13/148 (8%)

Query: 14  HRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVII 73
            RR  AR  A+QALYQ  + G + T+I +E+ T           +  +  VDLE+F+ +I
Sbjct: 11  ARRRKARHYALQALYQWHMAGATATDIEAEFRT-----------DYDFSVVDLEYFQALI 59

Query: 74  HGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCI 133
           HGV    + +D L+   L  +     LD I  S+LR G  EL +   VP  V+I+E V +
Sbjct: 60  HGVPPLVEELDSLLEPLLDRE--IRELDPIERSLLRMGGFELRDRIDVPYRVVINESVAL 117

Query: 134 AHDFFYGDEPKFINAVLDKVSRKEEIKR 161
           A  F   +  K+IN VLDK++R+     
Sbjct: 118 AKKFGAAESYKYINGVLDKLARQLRGPE 145


>gi|238787982|ref|ZP_04631778.1| N utilization substance protein B [Yersinia frederiksenii ATCC
           33641]
 gi|238723930|gb|EEQ15574.1| N utilization substance protein B [Yersinia frederiksenii ATCC
           33641]
          Length = 138

 Score =  159 bits (403), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 37/141 (26%), Positives = 66/141 (46%), Gaps = 13/141 (9%)

Query: 21  LAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRK 80
             AVQALY   +      ++  ++ + +   D           VD+ +FR ++ GV    
Sbjct: 11  ECAVQALYSWQLSKNDIADVELQFLSEQDVKD-----------VDIAYFRELLSGVAVNA 59

Query: 81  QHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYG 140
             +D L++  L+ +     L  +  ++LR  + EL +   VP +V I+E + +A  F   
Sbjct: 60  ASLDALMAPVLSRQ--LEELGQVERAVLRIALFELSKRDDVPYKVAINEAIELAKTFGAE 117

Query: 141 DEPKFINAVLDKVSRKEEIKR 161
           D  KF+N VLDK++     K+
Sbjct: 118 DSHKFVNGVLDKIAPMVRKKK 138


>gi|317492962|ref|ZP_07951386.1| transcription antitermination factor NusB [Enterobacteriaceae
           bacterium 9_2_54FAA]
 gi|316919084|gb|EFV40419.1| transcription antitermination factor NusB [Enterobacteriaceae
           bacterium 9_2_54FAA]
          Length = 139

 Score =  159 bits (402), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 38/134 (28%), Positives = 66/134 (49%), Gaps = 13/134 (9%)

Query: 21  LAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRK 80
             AVQALY   I      ++  ++ + +   D           VD+ +FR ++ GV    
Sbjct: 11  ECAVQALYSWQISKNDIADVEYQFLSEQDVKD-----------VDISYFRELLSGVATNA 59

Query: 81  QHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYG 140
           +++D L++  L+ +     L  +  ++LR  + EL +   VP +V I+E + +A  F   
Sbjct: 60  EYLDGLMAPVLSRQ--LEELGQVERAVLRISLFELSKREDVPYKVAINEGIELAKTFGAE 117

Query: 141 DEPKFINAVLDKVS 154
           D  KF+N VLDKV+
Sbjct: 118 DSHKFVNGVLDKVA 131


>gi|320540317|ref|ZP_08039969.1| transcription antitermination protein [Serratia symbiotica str.
           Tucson]
 gi|320029637|gb|EFW11664.1| transcription antitermination protein [Serratia symbiotica str.
           Tucson]
          Length = 138

 Score =  159 bits (402), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 38/141 (26%), Positives = 61/141 (43%), Gaps = 13/141 (9%)

Query: 21  LAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRK 80
             AVQALY   +      ++  ++ T           E     VD+ +FR +  GV    
Sbjct: 11  ECAVQALYSWQLSKNDIADVEHQFLT-----------EQDVNGVDIAYFRELFSGVAVNA 59

Query: 81  QHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYG 140
             +D L+   L+ +     L  +  ++LR  + EL     VP +V I+E + +A  F   
Sbjct: 60  GMLDTLMVPYLSRQ--LDELGQVERAVLRIALFELKMREDVPYKVAINEAIELAKTFGAE 117

Query: 141 DEPKFINAVLDKVSRKEEIKR 161
           D  KF+N VLDK +     K+
Sbjct: 118 DSHKFVNGVLDKAAPTIRKKK 138


>gi|156935035|ref|YP_001438951.1| transcription antitermination protein NusB [Cronobacter sakazakii
           ATCC BAA-894]
 gi|166215688|sp|A7MFG4|NUSB_ENTS8 RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|156533289|gb|ABU78115.1| hypothetical protein ESA_02886 [Cronobacter sakazakii ATCC BAA-894]
          Length = 139

 Score =  159 bits (402), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 36/142 (25%), Positives = 62/142 (43%), Gaps = 13/142 (9%)

Query: 21  LAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRK 80
             AVQALY   +      ++  ++             E     VD+ +FR ++ GV    
Sbjct: 11  ECAVQALYSWQLSHNDIADVEYQFLA-----------EQDVKDVDVMYFRELLSGVATNS 59

Query: 81  QHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYG 140
            ++D L+   L+ +     L  +  ++LR  + EL +   VP +V I+E + +A  F   
Sbjct: 60  GYLDGLMKPYLSRQ--LEELGQVEKAVLRIALFELSKRDDVPYKVAINEAIELAKVFGAE 117

Query: 141 DEPKFINAVLDKVSRKEEIKRS 162
           D  KF+N VLDK +      + 
Sbjct: 118 DSHKFVNGVLDKAAPHIRPNKK 139


>gi|206577191|ref|YP_002240116.1| transcription antitermination factor NusB [Klebsiella pneumoniae
           342]
 gi|288936865|ref|YP_003440924.1| NusB antitermination factor [Klebsiella variicola At-22]
 gi|290510079|ref|ZP_06549449.1| transcription antitermination factor NusB [Klebsiella sp. 1_1_55]
 gi|238055476|sp|B5Y0X5|NUSB_KLEP3 RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|206566249|gb|ACI08025.1| transcription antitermination factor NusB [Klebsiella pneumoniae
           342]
 gi|288891574|gb|ADC59892.1| NusB antitermination factor [Klebsiella variicola At-22]
 gi|289776795|gb|EFD84793.1| transcription antitermination factor NusB [Klebsiella sp. 1_1_55]
          Length = 139

 Score =  159 bits (402), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 36/134 (26%), Positives = 62/134 (46%), Gaps = 13/134 (9%)

Query: 21  LAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRK 80
             AVQALY   +      ++  ++   +   D           VD+ +FR ++ GV    
Sbjct: 11  ECAVQALYSWQLSHNDIADVEYQFLAEQDVKD-----------VDVLYFRELLSGVATNS 59

Query: 81  QHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYG 140
            ++D L+   L+ +     L  +  ++LR  + EL +   VP +V I+E + +A  F   
Sbjct: 60  AYLDGLMKPYLSRQ--LEELGQVEKAVLRIALFELSKRDDVPYKVAINEAIELAKTFGAE 117

Query: 141 DEPKFINAVLDKVS 154
           D  KF+N VLDK +
Sbjct: 118 DSHKFVNGVLDKAA 131


>gi|251796318|ref|YP_003011049.1| NusB antitermination factor [Paenibacillus sp. JDR-2]
 gi|247543944|gb|ACT00963.1| NusB antitermination factor [Paenibacillus sp. JDR-2]
          Length = 153

 Score =  159 bits (402), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 41/153 (26%), Positives = 74/153 (48%), Gaps = 2/153 (1%)

Query: 15  RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74
           +R +AR  AV +LYQ+++   +  E + +       ++ E++ E V       + R +++
Sbjct: 2   KRRLAREIAVSSLYQLEMNEVTPMEAV-DMLMEEARSENEIEAEFVENDQTDNYVRELVN 60

Query: 75  GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134
           GV + K  ID  +   LT  W   RL  +   ILR    E+   + VP +  I+E + +A
Sbjct: 61  GVAENKAAIDERLQHYLT-GWQVDRLSRVDRQILRLAYFEIAYRNDVPPKAAINEAIELA 119

Query: 135 HDFFYGDEPKFINAVLDKVSRKEEIKRSGCVSA 167
             F   +  KF+N VL K+ ++ E + +   S 
Sbjct: 120 KHFGTEESGKFVNGVLGKLLKEREGETANSEST 152


>gi|221310355|ref|ZP_03592202.1| transcription antitermination protein NusB [Bacillus subtilis
           subsp. subtilis str. 168]
 gi|221314679|ref|ZP_03596484.1| transcription antitermination protein NusB [Bacillus subtilis
           subsp. subtilis str. NCIB 3610]
 gi|221319602|ref|ZP_03600896.1| transcription antitermination protein NusB [Bacillus subtilis
           subsp. subtilis str. JH642]
 gi|221323878|ref|ZP_03605172.1| transcription antitermination protein NusB [Bacillus subtilis
           subsp. subtilis str. SMY]
 gi|255767541|ref|NP_390312.2| transcription antitermination protein NusB [Bacillus subtilis
           subsp. subtilis str. 168]
 gi|321311916|ref|YP_004204203.1| transcription antitermination protein NusB [Bacillus subtilis BSn5]
 gi|251757301|sp|P54520|NUSB_BACSU RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|225185169|emb|CAB14363.2| transcription termination factor NusB [Bacillus subtilis subsp.
           subtilis str. 168]
 gi|291484874|dbj|BAI85949.1| transcription antitermination protein NusB [Bacillus subtilis
           subsp. natto BEST195]
 gi|320018190|gb|ADV93176.1| transcription antitermination protein NusB [Bacillus subtilis BSn5]
          Length = 131

 Score =  159 bits (402), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 38/144 (26%), Positives = 62/144 (43%), Gaps = 16/144 (11%)

Query: 15  RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74
           +R  AR  A+QAL+QID+   +  E I                          +F  ++H
Sbjct: 2   KRRTAREKALQALFQIDVSDIAVNEAIEHALDEEKTD---------------PFFEQLVH 46

Query: 75  GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134
           GV++ +  +D +IS  L   W   R+  +  +ILR    E+     +PV V ++E + +A
Sbjct: 47  GVLEHQDQLDEMISKHLV-NWKLDRIANVDRAILRLAAYEMAYAEDIPVNVSMNEAIELA 105

Query: 135 HDFFYGDEPKFINAVLDKVSRKEE 158
             F      KF+N VL  +    E
Sbjct: 106 KRFGDDKATKFVNGVLSNIKSDIE 129


>gi|157369317|ref|YP_001477306.1| transcription antitermination protein NusB [Serratia proteamaculans
           568]
 gi|166918812|sp|A8GAN8|NUSB_SERP5 RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|157321081|gb|ABV40178.1| NusB antitermination factor [Serratia proteamaculans 568]
          Length = 138

 Score =  159 bits (402), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 38/141 (26%), Positives = 64/141 (45%), Gaps = 13/141 (9%)

Query: 21  LAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRK 80
             AVQALY   +      ++  ++ +           E     VD+ +FR ++ GV    
Sbjct: 11  ECAVQALYSWQLSKNDIADVEHQFLS-----------EQDVKDVDIVYFRELLSGVAVNA 59

Query: 81  QHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYG 140
             +D L++  L+ +     L  +  ++LR  + EL     VP +V I+E + +A  F   
Sbjct: 60  GLLDSLMAPVLSRQ--LEELGQVERAVLRIALYELKMREDVPYKVAINEAIELAKTFGAE 117

Query: 141 DEPKFINAVLDKVSRKEEIKR 161
           D  KF+N VLDKV+     K+
Sbjct: 118 DSHKFVNGVLDKVAPSIRKKK 138


>gi|226329105|ref|ZP_03804623.1| hypothetical protein PROPEN_03008 [Proteus penneri ATCC 35198]
 gi|225202291|gb|EEG84645.1| hypothetical protein PROPEN_03008 [Proteus penneri ATCC 35198]
          Length = 137

 Score =  159 bits (402), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 38/140 (27%), Positives = 61/140 (43%), Gaps = 13/140 (9%)

Query: 21  LAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRK 80
             AVQA+Y   + G    ++  E+ +           E     VD+ +FR ++ GV    
Sbjct: 11  ECAVQAIYSWQLSGNDIADVELEFLS-----------EQDTQGVDIAYFRELLVGVAINA 59

Query: 81  QHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYG 140
             +D  +   L+ +     L  +  +ILR  + EL     VP +V I+E + +A  F   
Sbjct: 60  TRLDKAMEPYLSRQ--LEELGQVEKAILRLAMFELSFREDVPYKVAINEAIELAKVFGAD 117

Query: 141 DEPKFINAVLDKVSRKEEIK 160
           D  KF+N VLDK +     K
Sbjct: 118 DSHKFVNGVLDKAAPTVRKK 137


>gi|254440807|ref|ZP_05054300.1| transcription antitermination factor NusB [Octadecabacter
           antarcticus 307]
 gi|198250885|gb|EDY75200.1| transcription antitermination factor NusB [Octadecabacter
           antarcticus 307]
          Length = 146

 Score =  159 bits (402), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 50/144 (34%), Positives = 81/144 (56%), Gaps = 5/144 (3%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           +  +RL AVQAL+Q++    S   +  E+E +RF A  E +        D+  FR+++  
Sbjct: 2   KSASRLYAVQALFQMEHSNQSIESVTREFENHRFGAIYEGNE---MAEGDVALFRILVET 58

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
            ++ +  ID +    L  KW  +R+D  L ++ RA  +EL+     P  V I+EYV +A 
Sbjct: 59  AVNEQSKIDQMTDRALVAKWPLARIDPTLRALFRAAGVELLGR-DTPPRVAITEYVDVAK 117

Query: 136 DFFY-GDEPKFINAVLDKVSRKEE 158
            FF  G+EPKF+NAVLD ++R+ +
Sbjct: 118 AFFDGGEEPKFVNAVLDHMARQAK 141


>gi|149916259|ref|ZP_01904780.1| transcription antitermination factor NusB [Roseobacter sp. AzwK-3b]
 gi|149809919|gb|EDM69770.1| transcription antitermination factor NusB [Roseobacter sp. AzwK-3b]
          Length = 168

 Score =  158 bits (401), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 47/160 (29%), Positives = 79/160 (49%), Gaps = 5/160 (3%)

Query: 2   TIQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVY 61
           T        +    R  AR  AVQAL+Q+++   +   +I E+E +RF A  +   E   
Sbjct: 11  TTSAVPSGNQRRKMRSAARFYAVQALFQMEVSQQTVDAVIREFEDHRFGAHYD---EGDM 67

Query: 62  LHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSV 121
           +  D   F  ++   ++ +  ID +    L  KW  +R+D  L ++ RA   E+ +    
Sbjct: 68  VEGDPVLFGQLMRDAVNWQASIDQMTDRALVAKWPIARIDPTLRALFRAAGAEMTQS-DT 126

Query: 122 PVEVIISEYVCIAHDFF-YGDEPKFINAVLDKVSRKEEIK 160
           P +V+I E+V IA  F+  G E  F+NAVLD ++R+   +
Sbjct: 127 PPKVVIMEFVDIAKSFYPEGKESSFVNAVLDHMAREARPE 166


>gi|209363834|ref|YP_001423988.2| transcription antitermination protein NusB [Coxiella burnetii
           Dugway 5J108-111]
 gi|207081767|gb|ABS77377.2| N utilization substance protein B [Coxiella burnetii Dugway
           5J108-111]
          Length = 179

 Score =  158 bits (401), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 42/153 (27%), Positives = 78/153 (50%), Gaps = 13/153 (8%)

Query: 4   QDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLH 63
           ++N+++L ++  R  AR  A+QALYQ          +IS++      +DT          
Sbjct: 35  KNNRRNLMINKTRHNARRYALQALYQWFFCETKPDALISQFMEEHDLSDT---------- 84

Query: 64  VDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPV 123
            D+ +F+ ++ G +     ID L+++ L  K   S L+ +  S+LR  + EL+    VP 
Sbjct: 85  -DVAYFKEVVTGTIQHVAIIDELMTAHLDRK--ISALNPVELSVLRLSIYELLHRKEVPY 141

Query: 124 EVIISEYVCIAHDFFYGDEPKFINAVLDKVSRK 156
           +V+I E + +  +F      K++NA+LD +S +
Sbjct: 142 KVVIDEALELVKEFGAEAGHKYVNAILDVLSSE 174


>gi|302338941|ref|YP_003804147.1| NusB antitermination factor [Spirochaeta smaragdinae DSM 11293]
 gi|301636126|gb|ADK81553.1| NusB antitermination factor [Spirochaeta smaragdinae DSM 11293]
          Length = 140

 Score =  158 bits (401), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 45/143 (31%), Positives = 70/143 (48%), Gaps = 8/143 (5%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           R  AR+ A QA+Y  +       E++ +++        +LD E+        + R+++ G
Sbjct: 4   RRKARILAFQAIYSWEFHKPLLAELL-QFDWLEEERKAKLDTETWL------FARLLVQG 56

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
            ++    ID  I + L E W FSRL  +  +ILR    EL+    VP  V I E V +A 
Sbjct: 57  TIENCDTIDHRIQNRL-EHWDFSRLSKVDLAILRLSTYELLFQQDVPASVAIDEAVDLAK 115

Query: 136 DFFYGDEPKFINAVLDKVSRKEE 158
           DF   D  +FIN VLD + ++ E
Sbjct: 116 DFGGDDSYRFINGVLDSIRKERE 138


>gi|238783631|ref|ZP_04627652.1| N utilization substance protein B [Yersinia bercovieri ATCC 43970]
 gi|238715509|gb|EEQ07500.1| N utilization substance protein B [Yersinia bercovieri ATCC 43970]
          Length = 138

 Score =  158 bits (401), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 37/141 (26%), Positives = 66/141 (46%), Gaps = 13/141 (9%)

Query: 21  LAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRK 80
             AVQALY   +      ++  ++ + +   D           VD+ +FR ++ GV    
Sbjct: 11  ECAVQALYSWQLSKNDIADVELQFLSEQDVKD-----------VDIAYFRELLSGVAVNA 59

Query: 81  QHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYG 140
             +D L++  L+ +     L  +  ++LR  + EL +   VP +V I+E + +A  F   
Sbjct: 60  ASLDALMAPVLSRQ--LEELGQVERAVLRIALFELSKREDVPYKVAINEAIELAKTFGAE 117

Query: 141 DEPKFINAVLDKVSRKEEIKR 161
           D  KF+N VLDK++     K+
Sbjct: 118 DSHKFVNGVLDKLAPTVRKKK 138


>gi|197283996|ref|YP_002149868.1| transcription antitermination protein NusB [Proteus mirabilis
           HI4320]
 gi|227358135|ref|ZP_03842476.1| N utilization substance protein B [Proteus mirabilis ATCC 29906]
 gi|238693150|sp|B4EU20|NUSB_PROMH RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|194681483|emb|CAR40329.1| N utilization substance protein B [Proteus mirabilis HI4320]
 gi|227161471|gb|EEI46508.1| N utilization substance protein B [Proteus mirabilis ATCC 29906]
          Length = 137

 Score =  158 bits (401), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 38/140 (27%), Positives = 61/140 (43%), Gaps = 13/140 (9%)

Query: 21  LAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRK 80
             AVQA+Y   + G    ++  E+ +           E     VD+ +FR ++ GV    
Sbjct: 11  ECAVQAIYSWQLSGNDIADVELEFLS-----------EQDTQGVDIAYFRELLVGVAINA 59

Query: 81  QHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYG 140
             +D  +   L+ +     L  +  +ILR  + EL     VP +V I+E + +A  F   
Sbjct: 60  ARLDKAMEPYLSRQ--LEELGQVEKAILRLAMFELSFREDVPYKVAINEAIELAKVFGAD 117

Query: 141 DEPKFINAVLDKVSRKEEIK 160
           D  KF+N VLDK +     K
Sbjct: 118 DSHKFVNGVLDKAAPTVRKK 137


>gi|260596785|ref|YP_003209356.1| transcription antitermination protein NusB [Cronobacter turicensis
           z3032]
 gi|260215962|emb|CBA28587.1| N utilization substance protein B homolog [Cronobacter turicensis
           z3032]
          Length = 139

 Score =  158 bits (401), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 36/134 (26%), Positives = 61/134 (45%), Gaps = 13/134 (9%)

Query: 21  LAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRK 80
             AVQALY   +      ++  ++             E     VD+ +FR ++ GV    
Sbjct: 11  ECAVQALYSWQLSHNDIADVEYQFLA-----------EQDVKDVDVMYFRELLSGVATNS 59

Query: 81  QHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYG 140
            ++D L+   L+ +     L  +  ++LR  + EL +   VP +V I+E + +A  F   
Sbjct: 60  GYLDGLMKPYLSRQ--LEELGQVEKAVLRIALFELSKRDDVPYKVAINEAIELAKVFGAE 117

Query: 141 DEPKFINAVLDKVS 154
           D  KF+N VLDK +
Sbjct: 118 DSHKFVNGVLDKAA 131


>gi|116748821|ref|YP_845508.1| NusB antitermination factor [Syntrophobacter fumaroxidans MPOB]
 gi|166215725|sp|A0LI21|NUSB_SYNFM RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|116697885|gb|ABK17073.1| NusB antitermination factor [Syntrophobacter fumaroxidans MPOB]
          Length = 151

 Score =  158 bits (401), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 39/146 (26%), Positives = 67/146 (45%), Gaps = 6/146 (4%)

Query: 15  RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74
           RR  +R  A+Q LYQ+++      E +  Y         + D +         +   I+ 
Sbjct: 3   RRRRSREMALQVLYQMEMAVLPPEEALGLYYQL-----FDDDEKHRVPAEVRPFAEEIVR 57

Query: 75  GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134
           GV   +  ID +I+S  +E W  +R+ ++  +ILR  V E++ C  +P +V I+E + + 
Sbjct: 58  GVSLHRARIDEMITSA-SEHWRLARMSLVDRNILRIAVFEMLFCFDIPPKVSINEAIDLG 116

Query: 135 HDFFYGDEPKFINAVLDKVSRKEEIK 160
             F   D   FIN +LD +    E  
Sbjct: 117 KTFGSPDSGAFINGILDHILPLLEAN 142


>gi|311693386|gb|ADP96259.1| transcription antitermination protein NusB [marine bacterium HP15]
          Length = 158

 Score =  158 bits (401), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 43/161 (26%), Positives = 75/161 (46%), Gaps = 13/161 (8%)

Query: 2   TIQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVY 61
           + Q        +  R  AR  A+Q LYQ      + ++I +E+            V++  
Sbjct: 8   SPQPAPSGQPKAGDRRRARALAMQGLYQRHFSKTAISDIEAEFM-----------VDNDM 56

Query: 62  LHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSV 121
             VDL +FR ++ GV   +  +D LI   L        +D +  +I+R G  EL     V
Sbjct: 57  SKVDLLYFRDLLRGVHREQGELDKLIEPFLDR--PIKEVDPVELAIVRLGAYELKHRLDV 114

Query: 122 PVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRS 162
           P +V+I+E + +A  F   +  KF+N++LDK+S +  +  +
Sbjct: 115 PYKVVINEGIEMAKRFGGTEGHKFVNSILDKLSGRLRLAET 155


>gi|270263549|ref|ZP_06191818.1| putative N-utilization protein B [Serratia odorifera 4Rx13]
 gi|270042433|gb|EFA15528.1| putative N-utilization protein B [Serratia odorifera 4Rx13]
          Length = 140

 Score =  158 bits (400), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 38/142 (26%), Positives = 63/142 (44%), Gaps = 13/142 (9%)

Query: 21  LAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRK 80
             AVQALY   +      ++  ++ T +   D           VD+ +FR ++ GV    
Sbjct: 11  ECAVQALYSWQLSKNDIADVEHQFLTEQDVKD-----------VDIAYFRELLSGVAVNA 59

Query: 81  QHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYG 140
             +D L++  L+ +     L  +  ++LR  + EL     VP +V I+E + +A  F   
Sbjct: 60  GLLDGLMAPFLSRQ--LEELGQVERAVLRIALFELKMREDVPYKVAINEAIELAKTFGAE 117

Query: 141 DEPKFINAVLDKVSRKEEIKRS 162
           D  KF+N VLDK +     K  
Sbjct: 118 DSHKFVNGVLDKAAPSIRKKNK 139


>gi|329850578|ref|ZP_08265423.1| transcription antitermination factor NusB [Asticcacaulis
           biprosthecum C19]
 gi|328840893|gb|EGF90464.1| transcription antitermination factor NusB [Asticcacaulis
           biprosthecum C19]
          Length = 173

 Score =  158 bits (400), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 53/143 (37%), Positives = 75/143 (52%), Gaps = 3/143 (2%)

Query: 14  HRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVII 73
             R +ARL  VQALYQ++I G     ++ E+  +RF  D E +        D  +F    
Sbjct: 31  RARTVARLVLVQALYQMEITGTGVETVVREFADHRFDTDLEGEP---LAQADEAFFGEGA 87

Query: 74  HGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCI 133
             V+  +  ID LI+  L   W   RLD  + +ILRAG  EL     + +EV+I+EYV I
Sbjct: 88  RAVVREQGVIDPLITHRLASGWRLERLDTTVRAILRAGTWELKFRPDIGLEVVINEYVEI 147

Query: 134 AHDFFYGDEPKFINAVLDKVSRK 156
           A  FF   E +F+NA LD V++ 
Sbjct: 148 ARAFFGETEARFVNAALDGVAKD 170


>gi|114570081|ref|YP_756761.1| transcription antitermination protein NusB [Maricaulis maris MCS10]
 gi|119390782|sp|Q0APG4|NUSB_MARMM RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|114340543|gb|ABI65823.1| NusB antitermination factor [Maricaulis maris MCS10]
          Length = 160

 Score =  158 bits (400), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 52/133 (39%), Positives = 80/133 (60%), Gaps = 3/133 (2%)

Query: 23  AVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQH 82
           AVQALYQ++I G   + +I E+  +RF A  E      ++  D ++F  ++ GV++R+  
Sbjct: 24  AVQALYQMEIGGLGASAVIREFREHRFGACGEAPE---FVEADEDFFESLVAGVVERQAD 80

Query: 83  IDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDE 142
           +D  + + L +KW   RLD  + +ILR G  EL+    VP  V+I EY+ +A+ FF G E
Sbjct: 81  VDPAMDALLADKWRLERLDATVRAILRVGGFELLYRKDVPARVVIDEYIEVANAFFEGAE 140

Query: 143 PKFINAVLDKVSR 155
           PKFINA  D+ +R
Sbjct: 141 PKFINAAFDRCAR 153


>gi|109897640|ref|YP_660895.1| NusB antitermination factor [Pseudoalteromonas atlantica T6c]
 gi|119390797|sp|Q15W97|NUSB_PSEA6 RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|109699921|gb|ABG39841.1| NusB antitermination factor [Pseudoalteromonas atlantica T6c]
          Length = 140

 Score =  158 bits (400), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 44/146 (30%), Positives = 65/146 (44%), Gaps = 14/146 (9%)

Query: 10  LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF 69
           +K + RR  AR  AVQA+Y   +      +I     T     D           VD E+F
Sbjct: 1   MKPAARR-KARELAVQAVYSWQMSKNPLDQIELSIVTSNNMQD-----------VDTEYF 48

Query: 70  RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISE 129
             ++  V+ R   +D  I   L        LD +  +ILR    EL+E   VP +V+I+E
Sbjct: 49  LELLRAVVRRTAELDAKIKPYLGR--LPEELDPVENAILRLATYELVERIDVPYKVVINE 106

Query: 130 YVCIAHDFFYGDEPKFINAVLDKVSR 155
            + +A  F   +  KF+N VLDK  +
Sbjct: 107 AIELAKSFGAEESHKFVNGVLDKAIK 132


>gi|311069033|ref|YP_003973956.1| transcription antitermination protein NusB [Bacillus atrophaeus
           1942]
 gi|310869550|gb|ADP33025.1| transcription antitermination protein NusB [Bacillus atrophaeus
           1942]
          Length = 131

 Score =  158 bits (400), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 38/144 (26%), Positives = 65/144 (45%), Gaps = 16/144 (11%)

Query: 15  RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74
           +R  AR  A+QAL+QID+   +  E I      +                   +F  +++
Sbjct: 2   KRRTAREKALQALFQIDVSDIAPNEAIEHALDDQKTD---------------PFFEELVY 46

Query: 75  GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134
           GV+D +  +D +IS  L   W   R+  +  ++LR  V E++    +PV V ++E + +A
Sbjct: 47  GVIDHQVQLDEMISKHLV-NWKLDRIANVDRAVLRLAVYEMVYVEDIPVNVSMNEAIELA 105

Query: 135 HDFFYGDEPKFINAVLDKVSRKEE 158
             F      KF+N VL  +    E
Sbjct: 106 KRFGDDKATKFVNGVLSNIKSDIE 129


>gi|51892987|ref|YP_075678.1| transcription termination factor [Symbiobacterium thermophilum IAM
           14863]
 gi|81610502|sp|Q67NA9|NUSB_SYMTH RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|51856676|dbj|BAD40834.1| transcription termination factor [Symbiobacterium thermophilum IAM
           14863]
          Length = 153

 Score =  158 bits (400), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 42/155 (27%), Positives = 70/155 (45%), Gaps = 5/155 (3%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           R  AR  A+QAL+Q+DI G      +++  T     D   D          E+ R ++ G
Sbjct: 3   RRKARELALQALFQMDIAGTDPDTAVAQALTRETEPDWAPD---RLEEESAEFARRLVRG 59

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
               ++  D LI+      W   R+  +  +ILR  V E++    VP  V ++E V +A 
Sbjct: 60  AWQHREESDRLIAQY-ARGWRVERMAAVDRAILRMAVYEIVHSEDVPDSVAVAEAVELAK 118

Query: 136 DFFYGDEPKFINAVLDKVSRKEEIKRSGCVSAITQ 170
            F   D  +F+N +L  V R  +   +G   A+++
Sbjct: 119 TFSTADSSRFVNGILGSVIRGMK-GAAGADEAVSR 152


>gi|253687422|ref|YP_003016612.1| NusB antitermination factor [Pectobacterium carotovorum subsp.
           carotovorum PC1]
 gi|259514866|sp|C6DB34|NUSB_PECCP RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|251754000|gb|ACT12076.1| NusB antitermination factor [Pectobacterium carotovorum subsp.
           carotovorum PC1]
          Length = 139

 Score =  158 bits (400), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 37/134 (27%), Positives = 65/134 (48%), Gaps = 13/134 (9%)

Query: 21  LAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRK 80
             AVQALY   +      ++  ++ + +   D           VD+ +FR ++ GV  + 
Sbjct: 11  ECAVQALYSWQLSKNDIADVEHQFLSEQDVKD-----------VDITYFRELLAGVATQA 59

Query: 81  QHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYG 140
           + +D L++  L+ +     L  +  +ILR  + EL +   VP +V I+E + +A  F   
Sbjct: 60  EKLDQLMAPFLSRQ--IEELGQVEKAILRLAMFELSKREDVPYKVAINEAIELAKVFGAE 117

Query: 141 DEPKFINAVLDKVS 154
           D  KF+N VLDK +
Sbjct: 118 DSHKFVNGVLDKAA 131


>gi|238752770|ref|ZP_04614239.1| N utilization substance protein B [Yersinia rohdei ATCC 43380]
 gi|238709028|gb|EEQ01277.1| N utilization substance protein B [Yersinia rohdei ATCC 43380]
          Length = 138

 Score =  158 bits (400), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 37/141 (26%), Positives = 65/141 (46%), Gaps = 13/141 (9%)

Query: 21  LAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRK 80
             AVQALY   +      ++  ++ +           E     VD+ +FR ++ GV    
Sbjct: 11  ECAVQALYSWQLSKNDIADVELQFLS-----------EQDVKDVDISYFRELLSGVAVNA 59

Query: 81  QHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYG 140
             +D L++  L+ +     L  +  ++LR  + EL +   VP +V I+E + +A  F   
Sbjct: 60  ASLDALMAPVLSRQ--LEELGQVERAVLRIALFELSKRDDVPYKVAINEAIELAKTFGAA 117

Query: 141 DEPKFINAVLDKVSRKEEIKR 161
           D  KF+N VLDK++     K+
Sbjct: 118 DSHKFVNGVLDKLAPTIRKKK 138


>gi|329298306|ref|ZP_08255642.1| transcription antitermination protein NusB [Plautia stali symbiont]
          Length = 139

 Score =  158 bits (400), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 37/142 (26%), Positives = 62/142 (43%), Gaps = 13/142 (9%)

Query: 21  LAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRK 80
             AVQALY   +      ++  ++             E     VD+ +FR ++ GV    
Sbjct: 11  ECAVQALYSWQLSNNDIADVEYQFLA-----------EQDVKDVDISYFRELLAGVATNS 59

Query: 81  QHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYG 140
             +D L+   L+ +     L  +  +ILR  + EL +   VP +V I+E + +A  F   
Sbjct: 60  AFLDGLMKPYLSRQ--LEELGQLEKAILRISLYELSKRDDVPYKVAINEGIELAKVFGAE 117

Query: 141 DEPKFINAVLDKVSRKEEIKRS 162
           D  KF+N VLDK + +    + 
Sbjct: 118 DSHKFVNGVLDKAAPQIRPNKK 139


>gi|283784235|ref|YP_003364100.1| N utilization substance protein B [Citrobacter rodentium ICC168]
 gi|282947689|emb|CBG87244.1| N utilization substance protein B [Citrobacter rodentium ICC168]
          Length = 139

 Score =  157 bits (399), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 36/134 (26%), Positives = 60/134 (44%), Gaps = 13/134 (9%)

Query: 21  LAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRK 80
             AVQALY   +      ++  ++             E     VD+ +FR ++ GV    
Sbjct: 11  ECAVQALYSWQLSQNDIADVEYQFLA-----------EQDVKDVDVMYFRELLSGVATNS 59

Query: 81  QHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYG 140
            ++D L+   L+       L  +  ++LR  + EL +   VP +V I+E + +A  F   
Sbjct: 60  AYLDGLMKPYLSR--LLEELGQVEKAVLRIALFELSKRSDVPYKVAINEAIELAKTFGAE 117

Query: 141 DEPKFINAVLDKVS 154
           D  KF+N VLDK +
Sbjct: 118 DSHKFVNGVLDKAA 131


>gi|16763798|ref|NP_459413.1| transcription antitermination protein NusB [Salmonella enterica
           subsp. enterica serovar Typhimurium str. LT2]
 gi|56414427|ref|YP_151502.1| transcription antitermination protein NusB [Salmonella enterica
           subsp. enterica serovar Paratyphi A str. ATCC 9150]
 gi|62179029|ref|YP_215446.1| transcription antitermination protein NusB [Salmonella enterica
           subsp. enterica serovar Choleraesuis str. SC-B67]
 gi|157146968|ref|YP_001454287.1| transcription antitermination protein NusB [Citrobacter koseri ATCC
           BAA-895]
 gi|161504397|ref|YP_001571509.1| transcription antitermination protein NusB [Salmonella enterica
           subsp. arizonae serovar 62:z4,z23:-- str. RSK2980]
 gi|161615394|ref|YP_001589359.1| transcription antitermination protein NusB [Salmonella enterica
           subsp. enterica serovar Paratyphi B str. SPB7]
 gi|167551771|ref|ZP_02345524.1| transcription termination/antitermination factor NusB [Salmonella
           enterica subsp. enterica serovar Saintpaul str. SARA29]
 gi|167992268|ref|ZP_02573366.1| transcription termination/antitermination factor NusB [Salmonella
           enterica subsp. enterica serovar 4,[5],12:i:- str.
           CVM23701]
 gi|168232391|ref|ZP_02657449.1| transcription termination/antitermination factor NusB [Salmonella
           enterica subsp. enterica serovar Kentucky str. CDC 191]
 gi|168237531|ref|ZP_02662589.1| transcription termination/antitermination factor NusB [Salmonella
           enterica subsp. enterica serovar Schwarzengrund str.
           SL480]
 gi|168240241|ref|ZP_02665173.1| transcription termination/antitermination factor NusB [Salmonella
           enterica subsp. enterica serovar Heidelberg str. SL486]
 gi|168261149|ref|ZP_02683122.1| transcription termination/antitermination factor NusB [Salmonella
           enterica subsp. enterica serovar Hadar str. RI_05P066]
 gi|168465508|ref|ZP_02699390.1| transcription termination/antitermination factor NusB [Salmonella
           enterica subsp. enterica serovar Newport str. SL317]
 gi|168818971|ref|ZP_02830971.1| transcription termination/antitermination factor NusB [Salmonella
           enterica subsp. enterica serovar Weltevreden str.
           HI_N05-537]
 gi|194445003|ref|YP_002039660.1| transcription antitermination protein NusB [Salmonella enterica
           subsp. enterica serovar Newport str. SL254]
 gi|194449230|ref|YP_002044453.1| transcription antitermination protein NusB [Salmonella enterica
           subsp. enterica serovar Heidelberg str. SL476]
 gi|194470791|ref|ZP_03076775.1| transcription termination/antitermination factor NusB [Salmonella
           enterica subsp. enterica serovar Kentucky str. CVM29188]
 gi|194735835|ref|YP_002113451.1| transcription antitermination protein NusB [Salmonella enterica
           subsp. enterica serovar Schwarzengrund str. CVM19633]
 gi|197249816|ref|YP_002145400.1| transcription antitermination protein NusB [Salmonella enterica
           subsp. enterica serovar Agona str. SL483]
 gi|197265909|ref|ZP_03165983.1| transcription termination/antitermination factor NusB [Salmonella
           enterica subsp. enterica serovar Saintpaul str. SARA23]
 gi|197363347|ref|YP_002142984.1| transcription antitermination protein NusB [Salmonella enterica
           subsp. enterica serovar Paratyphi A str. AKU_12601]
 gi|198243030|ref|YP_002214372.1| transcription antitermination protein NusB [Salmonella enterica
           subsp. enterica serovar Dublin str. CT_02021853]
 gi|200390221|ref|ZP_03216832.1| transcription termination/antitermination factor NusB [Salmonella
           enterica subsp. enterica serovar Virchow str. SL491]
 gi|204926733|ref|ZP_03217935.1| transcription termination/antitermination factor NusB [Salmonella
           enterica subsp. enterica serovar Javiana str.
           GA_MM04042433]
 gi|205351729|ref|YP_002225530.1| transcription antitermination protein NusB [Salmonella enterica
           subsp. enterica serovar Gallinarum str. 287/91]
 gi|207855899|ref|YP_002242550.1| transcription antitermination protein NusB [Salmonella enterica
           subsp. enterica serovar Enteritidis str. P125109]
 gi|224582256|ref|YP_002636054.1| transcription antitermination protein NusB [Salmonella enterica
           subsp. enterica serovar Paratyphi C strain RKS4594]
 gi|237730392|ref|ZP_04560873.1| transcription antitermination protein NusB [Citrobacter sp. 30_2]
 gi|238911449|ref|ZP_04655286.1| transcription antitermination protein NusB [Salmonella enterica
           subsp. enterica serovar Tennessee str. CDC07-0191]
 gi|283834267|ref|ZP_06354008.1| transcription antitermination factor NusB [Citrobacter youngae ATCC
           29220]
 gi|22095957|sp|Q8ZRD3|NUSB_SALTY RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|75484594|sp|Q57SE6|NUSB_SALCH RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|81599425|sp|Q5PFS9|NUSB_SALPA RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|166215680|sp|A8AK38|NUSB_CITK8 RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|189035901|sp|A9MM45|NUSB_SALAR RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|189035902|sp|A9MX13|NUSB_SALPB RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|238689944|sp|B5BDB4|NUSB_SALPK RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|238689999|sp|B5EXF9|NUSB_SALA4 RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|238690220|sp|B4T8Q9|NUSB_SALHS RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|238690323|sp|B5FKS3|NUSB_SALDC RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|238690385|sp|B5QTG6|NUSB_SALEP RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|238690477|sp|B5R6R9|NUSB_SALG2 RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|238690694|sp|B4TM98|NUSB_SALSV RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|238693540|sp|B4SWR0|NUSB_SALNS RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|254772653|sp|C0Q7U3|NUSB_SALPC RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|16418923|gb|AAL19372.1| transcription termination; L factor [Salmonella enterica subsp.
           enterica serovar Typhimurium str. LT2]
 gi|56128684|gb|AAV78190.1| N utilization substance protein B [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. ATCC 9150]
 gi|62126662|gb|AAX64365.1| transcription termination; L factor [Salmonella enterica subsp.
           enterica serovar Choleraesuis str. SC-B67]
 gi|157084173|gb|ABV13851.1| hypothetical protein CKO_02745 [Citrobacter koseri ATCC BAA-895]
 gi|160865744|gb|ABX22367.1| hypothetical protein SARI_02508 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
 gi|161364758|gb|ABX68526.1| hypothetical protein SPAB_03165 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|194403666|gb|ACF63888.1| transcription termination/antitermination factor NusB [Salmonella
           enterica subsp. enterica serovar Newport str. SL254]
 gi|194407534|gb|ACF67753.1| transcription termination/antitermination factor NusB [Salmonella
           enterica subsp. enterica serovar Heidelberg str. SL476]
 gi|194457155|gb|EDX45994.1| transcription termination/antitermination factor NusB [Salmonella
           enterica subsp. enterica serovar Kentucky str. CVM29188]
 gi|194711337|gb|ACF90558.1| transcription termination/antitermination factor NusB [Salmonella
           enterica subsp. enterica serovar Schwarzengrund str.
           CVM19633]
 gi|195631893|gb|EDX50413.1| transcription termination/antitermination factor NusB [Salmonella
           enterica subsp. enterica serovar Newport str. SL317]
 gi|197094824|emb|CAR60357.1| N utilization substance protein B [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. AKU_12601]
 gi|197213519|gb|ACH50916.1| transcription termination/antitermination factor NusB [Salmonella
           enterica subsp. enterica serovar Agona str. SL483]
 gi|197244164|gb|EDY26784.1| transcription termination/antitermination factor NusB [Salmonella
           enterica subsp. enterica serovar Saintpaul str. SARA23]
 gi|197289580|gb|EDY28943.1| transcription termination/antitermination factor NusB [Salmonella
           enterica subsp. enterica serovar Schwarzengrund str.
           SL480]
 gi|197937546|gb|ACH74879.1| transcription termination/antitermination factor NusB [Salmonella
           enterica subsp. enterica serovar Dublin str.
           CT_02021853]
 gi|199602666|gb|EDZ01212.1| transcription termination/antitermination factor NusB [Salmonella
           enterica subsp. enterica serovar Virchow str. SL491]
 gi|204323398|gb|EDZ08593.1| transcription termination/antitermination factor NusB [Salmonella
           enterica subsp. enterica serovar Javiana str.
           GA_MM04042433]
 gi|205271510|emb|CAR36328.1| N utilization substance protein B [Salmonella enterica subsp.
           enterica serovar Gallinarum str. 287/91]
 gi|205323516|gb|EDZ11355.1| transcription termination/antitermination factor NusB [Salmonella
           enterica subsp. enterica serovar Saintpaul str. SARA29]
 gi|205329474|gb|EDZ16238.1| transcription termination/antitermination factor NusB [Salmonella
           enterica subsp. enterica serovar 4,[5],12:i:- str.
           CVM23701]
 gi|205333370|gb|EDZ20134.1| transcription termination/antitermination factor NusB [Salmonella
           enterica subsp. enterica serovar Kentucky str. CDC 191]
 gi|205340408|gb|EDZ27172.1| transcription termination/antitermination factor NusB [Salmonella
           enterica subsp. enterica serovar Heidelberg str. SL486]
 gi|205343985|gb|EDZ30749.1| transcription termination/antitermination factor NusB [Salmonella
           enterica subsp. enterica serovar Weltevreden str.
           HI_N05-537]
 gi|205349770|gb|EDZ36401.1| transcription termination/antitermination factor NusB [Salmonella
           enterica subsp. enterica serovar Hadar str. RI_05P066]
 gi|206707702|emb|CAR31986.1| N utilization substance protein B [Salmonella enterica subsp.
           enterica serovar Enteritidis str. P125109]
 gi|224466783|gb|ACN44613.1| transcription antitermination protein NusB [Salmonella enterica
           subsp. enterica serovar Paratyphi C strain RKS4594]
 gi|226905931|gb|EEH91849.1| transcription antitermination protein NusB [Citrobacter sp. 30_2]
 gi|261245701|emb|CBG23497.1| N utilization substance protein B [Salmonella enterica subsp.
           enterica serovar Typhimurium str. D23580]
 gi|267992129|gb|ACY87014.1| transcription antitermination protein NusB [Salmonella enterica
           subsp. enterica serovar Typhimurium str. 14028S]
 gi|291069789|gb|EFE07898.1| transcription antitermination factor NusB [Citrobacter youngae ATCC
           29220]
 gi|301157029|emb|CBW16512.1| N utilization substance protein B [Salmonella enterica subsp.
           enterica serovar Typhimurium str. SL1344]
 gi|312911451|dbj|BAJ35425.1| transcription antitermination protein NusB [Salmonella enterica
           subsp. enterica serovar Typhimurium str. T000240]
 gi|320084694|emb|CBY94485.1| N utilization substance protein B homolog Protein nusB [Salmonella
           enterica subsp. enterica serovar Weltevreden str.
           2007-60-3289-1]
 gi|321225145|gb|EFX50206.1| Transcription termination protein NusB [Salmonella enterica subsp.
           enterica serovar Typhimurium str. TN061786]
 gi|322614698|gb|EFY11627.1| transcription antitermination protein NusB [Salmonella enterica
           subsp. enterica serovar Montevideo str. 315996572]
 gi|322618804|gb|EFY15692.1| transcription antitermination protein NusB [Salmonella enterica
           subsp. enterica serovar Montevideo str. 495297-1]
 gi|322623511|gb|EFY20350.1| transcription antitermination protein NusB [Salmonella enterica
           subsp. enterica serovar Montevideo str. 495297-3]
 gi|322629191|gb|EFY25970.1| transcription antitermination protein NusB [Salmonella enterica
           subsp. enterica serovar Montevideo str. 495297-4]
 gi|322631911|gb|EFY28665.1| transcription antitermination protein NusB [Salmonella enterica
           subsp. enterica serovar Montevideo str. 515920-1]
 gi|322637352|gb|EFY34054.1| transcription antitermination protein NusB [Salmonella enterica
           subsp. enterica serovar Montevideo str. 515920-2]
 gi|322642037|gb|EFY38647.1| transcription antitermination protein NusB [Salmonella enterica
           subsp. enterica serovar Montevideo str. 531954]
 gi|322647856|gb|EFY44331.1| transcription antitermination protein NusB [Salmonella enterica
           subsp. enterica serovar Montevideo str.
           NC_MB110209-0054]
 gi|322652534|gb|EFY48888.1| transcription antitermination protein NusB [Salmonella enterica
           subsp. enterica serovar Montevideo str. OH_2009072675]
 gi|322653304|gb|EFY49637.1| transcription antitermination protein NusB [Salmonella enterica
           subsp. enterica serovar Montevideo str.
           CASC_09SCPH15965]
 gi|322660547|gb|EFY56783.1| transcription antitermination protein NusB [Salmonella enterica
           subsp. enterica serovar Montevideo str. 19N]
 gi|322664699|gb|EFY60892.1| transcription antitermination protein NusB [Salmonella enterica
           subsp. enterica serovar Montevideo str. 81038-01]
 gi|322669248|gb|EFY65398.1| transcription antitermination protein NusB [Salmonella enterica
           subsp. enterica serovar Montevideo str. MD_MDA09249507]
 gi|322670793|gb|EFY66926.1| transcription antitermination protein NusB [Salmonella enterica
           subsp. enterica serovar Montevideo str. 414877]
 gi|322678968|gb|EFY75023.1| transcription antitermination protein NusB [Salmonella enterica
           subsp. enterica serovar Montevideo str. 366867]
 gi|322681996|gb|EFY78021.1| transcription antitermination protein NusB [Salmonella enterica
           subsp. enterica serovar Montevideo str. 413180]
 gi|322685175|gb|EFY81172.1| transcription antitermination protein NusB [Salmonella enterica
           subsp. enterica serovar Montevideo str. 446600]
 gi|322713490|gb|EFZ05061.1| transcription antitermination protein NusB [Salmonella enterica
           subsp. enterica serovar Choleraesuis str. A50]
 gi|323128737|gb|ADX16167.1| transcription antitermination protein NusB [Salmonella enterica
           subsp. enterica serovar Typhimurium str. 4/74]
 gi|323194477|gb|EFZ79672.1| transcription antitermination protein NusB [Salmonella enterica
           subsp. enterica serovar Montevideo str. 609458-1]
 gi|323196986|gb|EFZ82128.1| transcription antitermination protein NusB [Salmonella enterica
           subsp. enterica serovar Montevideo str. 556150-1]
 gi|323203971|gb|EFZ88988.1| transcription antitermination protein NusB [Salmonella enterica
           subsp. enterica serovar Montevideo str. 609460]
 gi|323206944|gb|EFZ91897.1| transcription antitermination protein NusB [Salmonella enterica
           subsp. enterica serovar Montevideo str. 507440-20]
 gi|323210838|gb|EFZ95710.1| transcription antitermination protein NusB [Salmonella enterica
           subsp. enterica serovar Montevideo str. 556152]
 gi|323214529|gb|EFZ99280.1| transcription antitermination protein NusB [Salmonella enterica
           subsp. enterica serovar Montevideo str. MB101509-0077]
 gi|323223086|gb|EGA07429.1| transcription antitermination protein NusB [Salmonella enterica
           subsp. enterica serovar Montevideo str. MB102109-0047]
 gi|323227035|gb|EGA11216.1| transcription antitermination protein NusB [Salmonella enterica
           subsp. enterica serovar Montevideo str. MB110209-0055]
 gi|323230147|gb|EGA14267.1| transcription antitermination protein NusB [Salmonella enterica
           subsp. enterica serovar Montevideo str. MB111609-0052]
 gi|323233885|gb|EGA17974.1| transcription antitermination protein NusB [Salmonella enterica
           subsp. enterica serovar Montevideo str. 2009083312]
 gi|323238421|gb|EGA22479.1| transcription antitermination protein NusB [Salmonella enterica
           subsp. enterica serovar Montevideo str. 2009085258]
 gi|323244109|gb|EGA28118.1| transcription antitermination protein NusB [Salmonella enterica
           subsp. enterica serovar Montevideo str. 315731156]
 gi|323246269|gb|EGA30252.1| transcription antitermination protein NusB [Salmonella enterica
           subsp. enterica serovar Montevideo str. IA_2009159199]
 gi|323251895|gb|EGA35758.1| transcription antitermination protein NusB [Salmonella enterica
           subsp. enterica serovar Montevideo str. IA_2010008282]
 gi|323257892|gb|EGA41571.1| transcription antitermination protein NusB [Salmonella enterica
           subsp. enterica serovar Montevideo str. IA_2010008283]
 gi|323261095|gb|EGA44687.1| transcription antitermination protein NusB [Salmonella enterica
           subsp. enterica serovar Montevideo str. IA_2010008284]
 gi|323264975|gb|EGA48474.1| transcription antitermination protein NusB [Salmonella enterica
           subsp. enterica serovar Montevideo str. IA_2010008285]
 gi|323272538|gb|EGA55945.1| transcription antitermination protein NusB [Salmonella enterica
           subsp. enterica serovar Montevideo str. IA_2010008287]
 gi|326622120|gb|EGE28465.1| transcription antitermination protein NusB [Salmonella enterica
           subsp. enterica serovar Dublin str. 3246]
 gi|326626764|gb|EGE33107.1| transcription antitermination protein NusB [Salmonella enterica
           subsp. enterica serovar Gallinarum str. 9]
 gi|332987366|gb|AEF06349.1| transcription antitermination protein NusB [Salmonella enterica
           subsp. enterica serovar Typhimurium str. UK-1]
          Length = 139

 Score =  157 bits (399), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 36/134 (26%), Positives = 60/134 (44%), Gaps = 13/134 (9%)

Query: 21  LAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRK 80
             AVQALY   +      ++  ++             E     VD+ +FR ++ GV    
Sbjct: 11  ECAVQALYSWQLSQNDIADVEYQFLA-----------EQDVKDVDVLYFRELLSGVATNS 59

Query: 81  QHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYG 140
            ++D L+   L+       L  +  ++LR  + EL +   VP +V I+E + +A  F   
Sbjct: 60  AYLDGLMKPYLSR--LLEELGQVEKAVLRIALFELSKRSDVPYKVAINEAIELAKTFGAE 117

Query: 141 DEPKFINAVLDKVS 154
           D  KF+N VLDK +
Sbjct: 118 DSHKFVNGVLDKAA 131


>gi|323702771|ref|ZP_08114431.1| NusB antitermination factor [Desulfotomaculum nigrificans DSM 574]
 gi|323532288|gb|EGB22167.1| NusB antitermination factor [Desulfotomaculum nigrificans DSM 574]
          Length = 144

 Score =  157 bits (399), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 42/152 (27%), Positives = 71/152 (46%), Gaps = 13/152 (8%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           R  AR  A+QAL+QID+        +            EL           E+ R ++ G
Sbjct: 3   RRQARETALQALFQIDVGKIEPEFALKNTAEEFGAGSQEL-----------EFARQLVTG 51

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
            ++    ID +IS  ++++W  SR+  +  +I+R  + E++    +P  V I+E V +A 
Sbjct: 52  TLEHINEIDEIISR-VSKEWQLSRMANVDRNIMRLALYEMMFRDDIPGSVSINEAVELAK 110

Query: 136 DFFYGDEPKFINAVLDKV-SRKEEIKRSGCVS 166
            F   D  KF+N +L KV + + E K +  V 
Sbjct: 111 AFGGADSGKFVNGILGKVLASQAEFKAAVSVP 142


>gi|126733189|ref|ZP_01748936.1| putative N utilization substance protein B [Roseobacter sp. CCS2]
 gi|126716055|gb|EBA12919.1| putative N utilization substance protein B [Roseobacter sp. CCS2]
          Length = 159

 Score =  157 bits (399), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 54/161 (33%), Positives = 86/161 (53%), Gaps = 9/161 (5%)

Query: 1   MTIQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESV 60
           MT+ +NKK       +  ARL AVQAL+Q++  G +  ++  E+E +R  A  +   E  
Sbjct: 1   MTLSNNKK----RKMKSAARLYAVQALFQMEASGQTVDQVTREFEDHRLGAVYD---EGE 53

Query: 61  YLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHS 120
               D++ FR ++   +D +  ID L    L  KW  +R+D    ++ RA   EL     
Sbjct: 54  MTEGDVDTFRALMEKAVDDQAAIDQLTDRALVAKWPIARIDPTWRALFRAAGAELT-LQD 112

Query: 121 VPVEVIISEYVCIAHDFFYG-DEPKFINAVLDKVSRKEEIK 160
            P +V+ISE+V +A  F     EPKF+NAVLD ++R+ + +
Sbjct: 113 TPPKVVISEFVSVAEAFSADGKEPKFVNAVLDHMAREAQPE 153


>gi|146310545|ref|YP_001175619.1| transcription antitermination protein NusB [Enterobacter sp. 638]
 gi|166918808|sp|A4W788|NUSB_ENT38 RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|145317421|gb|ABP59568.1| NusB antitermination factor [Enterobacter sp. 638]
          Length = 139

 Score =  157 bits (399), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 36/142 (25%), Positives = 62/142 (43%), Gaps = 13/142 (9%)

Query: 21  LAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRK 80
             AVQALY   +      ++  ++             E     VD+ +FR ++ GV    
Sbjct: 11  ECAVQALYSWQLSQNDIADVEYQFLA-----------EQDVKDVDVLYFRELLSGVATNS 59

Query: 81  QHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYG 140
            ++D L+   L+       L  +  ++LR  + EL +   VP +V I+E + +A  F   
Sbjct: 60  AYLDGLMKPYLSR--LLEELGQVEKAVLRIALFELAKRDDVPYKVAINEAIELAKTFGAE 117

Query: 141 DEPKFINAVLDKVSRKEEIKRS 162
           D  KF+N VLDK +     ++ 
Sbjct: 118 DSHKFVNGVLDKAAPAIRPRKK 139


>gi|71892016|ref|YP_277746.1| transcription antitermination protein NusB [Candidatus Blochmannia
           pennsylvanicus str. BPEN]
 gi|119372278|sp|Q493G9|NUSB_BLOPB RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|71796122|gb|AAZ40873.1| L factor [Candidatus Blochmannia pennsylvanicus str. BPEN]
          Length = 144

 Score =  157 bits (399), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 38/145 (26%), Positives = 63/145 (43%), Gaps = 13/145 (8%)

Query: 12  LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71
            +  R  AR   +QALY   +      EI     T           E      ++ +F  
Sbjct: 2   KAISRRRARECTLQALYSWQVSKNDVKEIERYVVT-----------EQDIQDCNISYFHE 50

Query: 72  IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
           +  GV+   + +D L+   L+      +L  I  S+LR  + EL +C+ +P +V I+E +
Sbjct: 51  LYIGVISCAEELDKLMIPHLSRN--LEKLGYIEHSVLRIALFELTKCNDIPYKVAINEAI 108

Query: 132 CIAHDFFYGDEPKFINAVLDKVSRK 156
            +   F      KFIN VLDK++ +
Sbjct: 109 ELVKIFGAEKSHKFINGVLDKIANQ 133


>gi|332307436|ref|YP_004435287.1| NusB antitermination factor [Glaciecola agarilytica 4H-3-7+YE-5]
 gi|332174765|gb|AEE24019.1| NusB antitermination factor [Glaciecola agarilytica 4H-3-7+YE-5]
          Length = 140

 Score =  157 bits (399), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 43/146 (29%), Positives = 65/146 (44%), Gaps = 14/146 (9%)

Query: 10  LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF 69
           +K + RR  AR  AVQA+Y   +      ++     T     D           VD E+F
Sbjct: 1   MKPAARR-KARELAVQAVYSWQMSKNPLDQVELSIVTSNNMQD-----------VDTEYF 48

Query: 70  RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISE 129
             ++  V+ +   +D  I   L        LD +  +ILR    EL+E   VP +V+I+E
Sbjct: 49  LELLRAVVRKTAELDAKIKPYLGR--LPEELDPVENAILRLATYELVERIDVPYKVVINE 106

Query: 130 YVCIAHDFFYGDEPKFINAVLDKVSR 155
            + +A  F   +  KFIN VLDK  +
Sbjct: 107 AIELAKSFGAEESHKFINGVLDKAIK 132


>gi|227113444|ref|ZP_03827100.1| transcription antitermination protein NusB [Pectobacterium
           carotovorum subsp. brasiliensis PBR1692]
          Length = 139

 Score =  157 bits (399), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 37/134 (27%), Positives = 65/134 (48%), Gaps = 13/134 (9%)

Query: 21  LAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRK 80
             AVQALY   +      ++  ++ + +   D           VD+ +FR ++ GV  + 
Sbjct: 11  ECAVQALYSWQLSKNDIADVEHQFLSEQDVKD-----------VDITYFRELLAGVATQA 59

Query: 81  QHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYG 140
           + +D L++  L+ +     L  +  +ILR  + EL +   VP +V I+E + +A  F   
Sbjct: 60  EKLDQLMAPFLSRQ--IEELGQVEKAILRLAMFELSKREDVPYKVAINEAIELAKIFGAE 117

Query: 141 DEPKFINAVLDKVS 154
           D  KF+N VLDK +
Sbjct: 118 DSHKFVNGVLDKAA 131


>gi|15800145|ref|NP_286157.1| transcription antitermination protein NusB [Escherichia coli
           O157:H7 EDL933]
 gi|15829723|ref|NP_308496.1| transcription antitermination protein NusB [Escherichia coli
           O157:H7 str. Sakai]
 gi|16128401|ref|NP_414950.1| transcription antitermination protein [Escherichia coli str. K-12
           substr. MG1655]
 gi|24111794|ref|NP_706304.1| transcription antitermination protein NusB [Shigella flexneri 2a
           str. 301]
 gi|26246422|ref|NP_752461.1| transcription antitermination protein NusB [Escherichia coli
           CFT073]
 gi|30061911|ref|NP_836082.1| transcription antitermination protein NusB [Shigella flexneri 2a
           str. 2457T]
 gi|74310985|ref|YP_309404.1| transcription antitermination protein NusB [Shigella sonnei Ss046]
 gi|82542904|ref|YP_406851.1| transcription antitermination protein NusB [Shigella boydii Sb227]
 gi|82775679|ref|YP_402026.1| transcription antitermination protein NusB [Shigella dysenteriae
           Sd197]
 gi|89107286|ref|AP_001066.1| transcription antitermination protein [Escherichia coli str. K-12
           substr. W3110]
 gi|91209485|ref|YP_539471.1| transcription antitermination protein NusB [Escherichia coli UTI89]
 gi|110640677|ref|YP_668405.1| transcription antitermination protein NusB [Escherichia coli 536]
 gi|110804438|ref|YP_687958.1| transcription antitermination protein NusB [Shigella flexneri 5
           str. 8401]
 gi|157154883|ref|YP_001461598.1| transcription antitermination protein NusB [Escherichia coli
           E24377A]
 gi|157159937|ref|YP_001457255.1| transcription antitermination protein NusB [Escherichia coli HS]
 gi|170021212|ref|YP_001726166.1| transcription antitermination protein NusB [Escherichia coli ATCC
           8739]
 gi|170080002|ref|YP_001729322.1| transcription antitermination protein [Escherichia coli str. K-12
           substr. DH10B]
 gi|170681155|ref|YP_001742553.1| transcription antitermination protein NusB [Escherichia coli
           SMS-3-5]
 gi|170767720|ref|ZP_02902173.1| transcription termination/antitermination factor NusB [Escherichia
           albertii TW07627]
 gi|187730987|ref|YP_001879125.1| transcription antitermination protein NusB [Shigella boydii CDC
           3083-94]
 gi|187776230|ref|ZP_02801288.2| transcription termination/antitermination factor NusB [Escherichia
           coli O157:H7 str. EC4196]
 gi|188024918|ref|ZP_02774897.2| transcription termination/antitermination factor NusB [Escherichia
           coli O157:H7 str. EC4113]
 gi|188493154|ref|ZP_03000424.1| transcription termination/antitermination factor NusB [Escherichia
           coli 53638]
 gi|189010625|ref|ZP_02808286.2| transcription termination/antitermination factor NusB [Escherichia
           coli O157:H7 str. EC4076]
 gi|189402368|ref|ZP_02781962.2| transcription termination/antitermination factor NusB [Escherichia
           coli O157:H7 str. EC4401]
 gi|189403130|ref|ZP_02793371.2| transcription termination/antitermination factor NusB [Escherichia
           coli O157:H7 str. EC4486]
 gi|189404015|ref|ZP_02786626.2| transcription termination/antitermination factor NusB [Escherichia
           coli O157:H7 str. EC4501]
 gi|189404842|ref|ZP_02811267.2| transcription termination/antitermination factor NusB [Escherichia
           coli O157:H7 str. EC869]
 gi|189405926|ref|ZP_02825303.2| transcription termination/antitermination factor NusB [Escherichia
           coli O157:H7 str. EC508]
 gi|191166701|ref|ZP_03028528.1| transcription termination/antitermination factor NusB [Escherichia
           coli B7A]
 gi|191173527|ref|ZP_03035054.1| transcription termination/antitermination factor NusB [Escherichia
           coli F11]
 gi|193065231|ref|ZP_03046304.1| transcription termination/antitermination factor NusB [Escherichia
           coli E22]
 gi|193068719|ref|ZP_03049680.1| transcription termination/antitermination factor NusB [Escherichia
           coli E110019]
 gi|194428830|ref|ZP_03061365.1| transcription termination/antitermination factor NusB [Escherichia
           coli B171]
 gi|194432551|ref|ZP_03064837.1| transcription termination/antitermination factor NusB [Shigella
           dysenteriae 1012]
 gi|194438929|ref|ZP_03071014.1| transcription termination/antitermination factor NusB [Escherichia
           coli 101-1]
 gi|195938519|ref|ZP_03083901.1| transcription antitermination protein NusB [Escherichia coli
           O157:H7 str. EC4024]
 gi|208809341|ref|ZP_03251678.1| transcription termination/antitermination factor NusB [Escherichia
           coli O157:H7 str. EC4206]
 gi|208815911|ref|ZP_03257090.1| transcription termination/antitermination factor NusB [Escherichia
           coli O157:H7 str. EC4045]
 gi|208822969|ref|ZP_03263287.1| transcription termination/antitermination factor NusB [Escherichia
           coli O157:H7 str. EC4042]
 gi|209396859|ref|YP_002269060.1| transcription termination/antitermination factor NusB [Escherichia
           coli O157:H7 str. EC4115]
 gi|209917629|ref|YP_002291713.1| transcription antitermination protein NusB [Escherichia coli SE11]
 gi|215485497|ref|YP_002327928.1| transcription antitermination protein NusB [Escherichia coli
           O127:H6 str. E2348/69]
 gi|217325689|ref|ZP_03441773.1| transcription termination/antitermination factor NusB [Escherichia
           coli O157:H7 str. TW14588]
 gi|218552979|ref|YP_002385892.1| transcription antitermination protein NusB [Escherichia coli IAI1]
 gi|218557325|ref|YP_002390238.1| transcription antitermination protein NusB [Escherichia coli S88]
 gi|218688279|ref|YP_002396491.1| transcription antitermination protein NusB [Escherichia coli ED1a]
 gi|218693876|ref|YP_002401543.1| transcription antitermination protein NusB [Escherichia coli 55989]
 gi|218698675|ref|YP_002406304.1| transcription antitermination protein NusB [Escherichia coli IAI39]
 gi|218703698|ref|YP_002411217.1| transcription antitermination protein NusB [Escherichia coli
           UMN026]
 gi|227884576|ref|ZP_04002381.1| N utilization substance B [Escherichia coli 83972]
 gi|237707590|ref|ZP_04538071.1| transcription termination [Escherichia sp. 3_2_53FAA]
 gi|238899704|ref|YP_002925500.1| transcription antitermination protein [Escherichia coli BW2952]
 gi|253774599|ref|YP_003037430.1| transcription antitermination protein NusB [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|254160482|ref|YP_003043590.1| transcription antitermination protein NusB [Escherichia coli B str.
           REL606]
 gi|254791599|ref|YP_003076436.1| transcription antitermination protein NusB [Escherichia coli
           O157:H7 str. TW14359]
 gi|256020383|ref|ZP_05434248.1| transcription antitermination protein NusB [Shigella sp. D9]
 gi|256023967|ref|ZP_05437832.1| transcription antitermination protein NusB [Escherichia sp.
           4_1_40B]
 gi|260842614|ref|YP_003220392.1| transcription antitermination protein NusB [Escherichia coli
           O103:H2 str. 12009]
 gi|260853636|ref|YP_003227527.1| transcription antitermination protein NusB [Escherichia coli
           O26:H11 str. 11368]
 gi|260866574|ref|YP_003232976.1| transcription antitermination protein NusB [Escherichia coli
           O111:H- str. 11128]
 gi|261223895|ref|ZP_05938176.1| transcription antitermination protein [Escherichia coli O157:H7
           str. FRIK2000]
 gi|261256391|ref|ZP_05948924.1| transcription antitermination protein NusB [Escherichia coli
           O157:H7 str. FRIK966]
 gi|291281322|ref|YP_003498140.1| N utilization substance protein B-like protein [Escherichia coli
           O55:H7 str. CB9615]
 gi|293403535|ref|ZP_06647626.1| N utilization substance protein B [Escherichia coli FVEC1412]
 gi|293408562|ref|ZP_06652401.1| transcription antitermination factor NusB [Escherichia coli B354]
 gi|293413670|ref|ZP_06656319.1| transcription antitermination factor NusB [Escherichia coli B185]
 gi|293418483|ref|ZP_06660918.1| transcription antitermination factor NusB [Escherichia coli B088]
 gi|297517701|ref|ZP_06936087.1| transcription antitermination protein NusB [Escherichia coli OP50]
 gi|298379147|ref|ZP_06989028.1| N utilization substance protein B [Escherichia coli FVEC1302]
 gi|300818260|ref|ZP_07098471.1| transcription antitermination factor NusB [Escherichia coli MS
           107-1]
 gi|300820345|ref|ZP_07100497.1| transcription antitermination factor NusB [Escherichia coli MS
           119-7]
 gi|300900482|ref|ZP_07118649.1| transcription antitermination factor NusB [Escherichia coli MS
           198-1]
 gi|300903319|ref|ZP_07121247.1| transcription antitermination factor NusB [Escherichia coli MS
           84-1]
 gi|300918204|ref|ZP_07134811.1| transcription antitermination factor NusB [Escherichia coli MS
           115-1]
 gi|300924136|ref|ZP_07140128.1| transcription antitermination factor NusB [Escherichia coli MS
           182-1]
 gi|300930289|ref|ZP_07145702.1| transcription antitermination factor NusB [Escherichia coli MS
           187-1]
 gi|300937025|ref|ZP_07151891.1| transcription antitermination factor NusB [Escherichia coli MS
           21-1]
 gi|300947933|ref|ZP_07162081.1| transcription antitermination factor NusB [Escherichia coli MS
           116-1]
 gi|300957981|ref|ZP_07170146.1| transcription antitermination factor NusB [Escherichia coli MS
           175-1]
 gi|300988032|ref|ZP_07178512.1| transcription antitermination factor NusB [Escherichia coli MS
           45-1]
 gi|300997397|ref|ZP_07181737.1| transcription antitermination factor NusB [Escherichia coli MS
           200-1]
 gi|301022595|ref|ZP_07186467.1| transcription antitermination factor NusB [Escherichia coli MS
           69-1]
 gi|301025697|ref|ZP_07189213.1| transcription antitermination factor NusB [Escherichia coli MS
           196-1]
 gi|301049616|ref|ZP_07196567.1| transcription antitermination factor NusB [Escherichia coli MS
           185-1]
 gi|301301564|ref|ZP_07207699.1| transcription antitermination factor NusB [Escherichia coli MS
           124-1]
 gi|301647338|ref|ZP_07247150.1| transcription antitermination factor NusB [Escherichia coli MS
           146-1]
 gi|306813118|ref|ZP_07447311.1| transcription antitermination protein NusB [Escherichia coli NC101]
 gi|307137059|ref|ZP_07496415.1| transcription antitermination protein NusB [Escherichia coli H736]
 gi|307312209|ref|ZP_07591845.1| NusB antitermination factor [Escherichia coli W]
 gi|309787003|ref|ZP_07681615.1| transcription antitermination factor NusB [Shigella dysenteriae
           1617]
 gi|309794859|ref|ZP_07689280.1| transcription antitermination factor NusB [Escherichia coli MS
           145-7]
 gi|312964562|ref|ZP_07778818.1| transcription antitermination factor NusB [Escherichia coli
           2362-75]
 gi|312970511|ref|ZP_07784692.1| transcription antitermination factor NusB [Escherichia coli
           1827-70]
 gi|331640933|ref|ZP_08342068.1| transcription antitermination factor NusB [Escherichia coli H736]
 gi|331645589|ref|ZP_08346693.1| transcription antitermination factor NusB [Escherichia coli M605]
 gi|331651350|ref|ZP_08352375.1| transcription antitermination factor NusB [Escherichia coli M718]
 gi|331656470|ref|ZP_08357432.1| transcription antitermination factor NusB [Escherichia coli TA206]
 gi|331661793|ref|ZP_08362716.1| transcription antitermination factor NusB [Escherichia coli TA143]
 gi|331666765|ref|ZP_08367639.1| transcription antitermination factor NusB [Escherichia coli TA271]
 gi|331671961|ref|ZP_08372757.1| transcription antitermination factor NusB [Escherichia coli TA280]
 gi|331676083|ref|ZP_08376795.1| transcription antitermination factor NusB [Escherichia coli H591]
 gi|331681809|ref|ZP_08382442.1| transcription antitermination factor NusB [Escherichia coli H299]
 gi|332281562|ref|ZP_08393975.1| transcription termination/antitermination factor NusB [Shigella sp.
           D9]
 gi|67469828|sp|P0A780|NUSB_ECOLI RecName: Full=N utilization substance protein B; Short=Protein nusB
 gi|67469829|sp|P0A781|NUSB_ECOL6 RecName: Full=N utilization substance protein B; Short=Protein nusB
 gi|67469832|sp|P0A782|NUSB_ECO57 RecName: Full=N utilization substance protein B; Short=Protein nusB
 gi|67469833|sp|P0A783|NUSB_SHIFL RecName: Full=N utilization substance protein B; Short=Protein nusB
 gi|119390769|sp|Q0TKM5|NUSB_ECOL5 RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|119390770|sp|Q1RFC4|NUSB_ECOUT RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|119390822|sp|Q325I5|NUSB_SHIBS RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|119390823|sp|Q32JH0|NUSB_SHIDS RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|119390824|sp|Q3Z4Z3|NUSB_SHISS RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|122957627|sp|Q0T7H3|NUSB_SHIF8 RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|166918806|sp|A7ZIG9|NUSB_ECO24 RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|166918807|sp|A7ZX68|NUSB_ECOHS RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|189035889|sp|B1J033|NUSB_ECOLC RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|226738899|sp|B7MD74|NUSB_ECO45 RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|226738900|sp|B7NJ81|NUSB_ECO7I RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|226738901|sp|B7M3Q5|NUSB_ECO8A RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|226738902|sp|B7N8W8|NUSB_ECOLU RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|226738903|sp|B1LJG6|NUSB_ECOSM RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|229620059|sp|B1XF04|NUSB_ECODH RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|238055351|sp|B5Z3S0|NUSB_ECO5E RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|238055352|sp|B6HZL7|NUSB_ECOSE RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|238689513|sp|B2U4L9|NUSB_SHIB3 RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|254772637|sp|B7UJN9|NUSB_ECO27 RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|254772638|sp|B7L650|NUSB_ECO55 RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|254772639|sp|B7MQD1|NUSB_ECO81 RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|259514826|sp|C4ZTH3|NUSB_ECOBW RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|9257110|pdb|1EY1|A Chain A, Solution Structure Of Escherichia Coli Nusb
 gi|12513271|gb|AAG54765.1|AE005221_2 transcription termination; L factor [Escherichia coli O157:H7 str.
           EDL933]
 gi|26106820|gb|AAN79005.1|AE016756_188 N utilization substance protein B [Escherichia coli CFT073]
 gi|146976|gb|AAA24228.1| nusB [Escherichia coli]
 gi|581148|emb|CAA45737.1| nusB (ssyB) [Escherichia coli K-12]
 gi|581149|emb|CAA25289.1| unnamed protein product [Escherichia coli]
 gi|1773100|gb|AAB40172.1| N utilization substance protein B [Escherichia coli]
 gi|1786618|gb|AAC73519.1| transcription antitermination protein [Escherichia coli str. K-12
           substr. MG1655]
 gi|13359926|dbj|BAB33892.1| transcription termination factor NusB [Escherichia coli O157:H7
           str. Sakai]
 gi|15027052|emb|CAC44764.1| N utilisation substance protein B [Expression vector
           pNCO113-nusB/nusE]
 gi|24050582|gb|AAN42011.1| transcription termination factor NusB [Shigella flexneri 2a str.
           301]
 gi|30040155|gb|AAP15888.1| transcription termination factor NusB [Shigella flexneri 2a str.
           2457T]
 gi|73854462|gb|AAZ87169.1| transcription termination; L factor [Shigella sonnei Ss046]
 gi|81239827|gb|ABB60537.1| NusB [Shigella dysenteriae Sd197]
 gi|81244315|gb|ABB65023.1| NusB [Shigella boydii Sb227]
 gi|85674556|dbj|BAE76196.1| transcription antitermination protein [Escherichia coli str. K12
           substr. W3110]
 gi|91071059|gb|ABE05940.1| FJECB transcription termination; L factor [Escherichia coli UTI89]
 gi|110342269|gb|ABG68506.1| N utilization substance protein B [Escherichia coli 536]
 gi|110613986|gb|ABF02653.1| transcription termination L factor [Shigella flexneri 5 str. 8401]
 gi|157065617|gb|ABV04872.1| transcription termination/antitermination factor NusB [Escherichia
           coli HS]
 gi|157076913|gb|ABV16621.1| transcription termination/antitermination factor NusB [Escherichia
           coli E24377A]
 gi|169756140|gb|ACA78839.1| NusB antitermination factor [Escherichia coli ATCC 8739]
 gi|169887837|gb|ACB01544.1| transcription antitermination protein [Escherichia coli str. K-12
           substr. DH10B]
 gi|170123208|gb|EDS92139.1| transcription termination/antitermination factor NusB [Escherichia
           albertii TW07627]
 gi|170518873|gb|ACB17051.1| transcription termination/antitermination factor NusB [Escherichia
           coli SMS-3-5]
 gi|187427979|gb|ACD07253.1| transcription termination/antitermination factor NusB [Shigella
           boydii CDC 3083-94]
 gi|187768302|gb|EDU32146.1| transcription termination/antitermination factor NusB [Escherichia
           coli O157:H7 str. EC4196]
 gi|188015850|gb|EDU53972.1| transcription termination/antitermination factor NusB [Escherichia
           coli O157:H7 str. EC4113]
 gi|188488353|gb|EDU63456.1| transcription termination/antitermination factor NusB [Escherichia
           coli 53638]
 gi|188999358|gb|EDU68344.1| transcription termination/antitermination factor NusB [Escherichia
           coli O157:H7 str. EC4076]
 gi|189356022|gb|EDU74441.1| transcription termination/antitermination factor NusB [Escherichia
           coli O157:H7 str. EC4401]
 gi|189362518|gb|EDU80937.1| transcription termination/antitermination factor NusB [Escherichia
           coli O157:H7 str. EC4486]
 gi|189368081|gb|EDU86497.1| transcription termination/antitermination factor NusB [Escherichia
           coli O157:H7 str. EC4501]
 gi|189373730|gb|EDU92146.1| transcription termination/antitermination factor NusB [Escherichia
           coli O157:H7 str. EC869]
 gi|189377377|gb|EDU95793.1| transcription termination/antitermination factor NusB [Escherichia
           coli O157:H7 str. EC508]
 gi|190903212|gb|EDV62934.1| transcription termination/antitermination factor NusB [Escherichia
           coli B7A]
 gi|190906236|gb|EDV65848.1| transcription termination/antitermination factor NusB [Escherichia
           coli F11]
 gi|192927205|gb|EDV81826.1| transcription termination/antitermination factor NusB [Escherichia
           coli E22]
 gi|192958082|gb|EDV88524.1| transcription termination/antitermination factor NusB [Escherichia
           coli E110019]
 gi|194413133|gb|EDX29420.1| transcription termination/antitermination factor NusB [Escherichia
           coli B171]
 gi|194419112|gb|EDX35195.1| transcription termination/antitermination factor NusB [Shigella
           dysenteriae 1012]
 gi|194422223|gb|EDX38225.1| transcription termination/antitermination factor NusB [Escherichia
           coli 101-1]
 gi|208729142|gb|EDZ78743.1| transcription termination/antitermination factor NusB [Escherichia
           coli O157:H7 str. EC4206]
 gi|208732559|gb|EDZ81247.1| transcription termination/antitermination factor NusB [Escherichia
           coli O157:H7 str. EC4045]
 gi|208737162|gb|EDZ84846.1| transcription termination/antitermination factor NusB [Escherichia
           coli O157:H7 str. EC4042]
 gi|209158259|gb|ACI35692.1| transcription termination/antitermination factor NusB [Escherichia
           coli O157:H7 str. EC4115]
 gi|209744064|gb|ACI70339.1| transcription termination factor NusB [Escherichia coli]
 gi|209744066|gb|ACI70340.1| transcription termination factor NusB [Escherichia coli]
 gi|209744068|gb|ACI70341.1| transcription termination factor NusB [Escherichia coli]
 gi|209744070|gb|ACI70342.1| transcription termination factor NusB [Escherichia coli]
 gi|209744072|gb|ACI70343.1| transcription termination factor NusB [Escherichia coli]
 gi|209910888|dbj|BAG75962.1| N utilization substance protein B [Escherichia coli SE11]
 gi|215263569|emb|CAS07899.1| transcription antitermination protein NusB [Escherichia coli
           O127:H6 str. E2348/69]
 gi|217321910|gb|EEC30334.1| transcription termination/antitermination factor NusB [Escherichia
           coli O157:H7 str. TW14588]
 gi|218350608|emb|CAU96300.1| transcription antitermination protein [Escherichia coli 55989]
 gi|218359747|emb|CAQ97288.1| transcription antitermination protein [Escherichia coli IAI1]
 gi|218364094|emb|CAR01759.1| transcription antitermination protein [Escherichia coli S88]
 gi|218368661|emb|CAR16400.1| transcription antitermination protein [Escherichia coli IAI39]
 gi|218425843|emb|CAR06649.1| transcription antitermination protein [Escherichia coli ED1a]
 gi|218430795|emb|CAR11669.1| transcription antitermination protein [Escherichia coli UMN026]
 gi|222032211|emb|CAP74950.1| N utilization substance protein B [Escherichia coli LF82]
 gi|226898800|gb|EEH85059.1| transcription termination [Escherichia sp. 3_2_53FAA]
 gi|227838662|gb|EEJ49128.1| N utilization substance B [Escherichia coli 83972]
 gi|238863676|gb|ACR65674.1| transcription antitermination protein [Escherichia coli BW2952]
 gi|242376194|emb|CAQ30885.1| transcription antitermination protein NusB, subunit of NusB-NusE
           complex [Escherichia coli BL21(DE3)]
 gi|253325643|gb|ACT30245.1| NusB antitermination factor [Escherichia coli 'BL21-Gold(DE3)pLysS
           AG']
 gi|253972383|gb|ACT38054.1| transcription antitermination protein NusB [Escherichia coli B str.
           REL606]
 gi|253976593|gb|ACT42263.1| transcription antitermination protein NusB [Escherichia coli
           BL21(DE3)]
 gi|254590999|gb|ACT70360.1| transcription antitermination protein [Escherichia coli O157:H7
           str. TW14359]
 gi|257752285|dbj|BAI23787.1| transcription antitermination protein NusB [Escherichia coli
           O26:H11 str. 11368]
 gi|257757761|dbj|BAI29258.1| transcription antitermination protein NusB [Escherichia coli
           O103:H2 str. 12009]
 gi|257762930|dbj|BAI34425.1| transcription antitermination protein NusB [Escherichia coli
           O111:H- str. 11128]
 gi|260450397|gb|ACX40819.1| NusB antitermination factor [Escherichia coli DH1]
 gi|281177586|dbj|BAI53916.1| N utilization substance protein B [Escherichia coli SE15]
 gi|281599748|gb|ADA72732.1| N utilization substance protein B [Shigella flexneri 2002017]
 gi|284920225|emb|CBG33284.1| N utilization substance protein B [Escherichia coli 042]
 gi|290761195|gb|ADD55156.1| N utilization substance protein B-like protein [Escherichia coli
           O55:H7 str. CB9615]
 gi|291325011|gb|EFE64426.1| transcription antitermination factor NusB [Escherichia coli B088]
 gi|291429388|gb|EFF02408.1| N utilization substance protein B [Escherichia coli FVEC1412]
 gi|291433728|gb|EFF06701.1| transcription antitermination factor NusB [Escherichia coli B185]
 gi|291471740|gb|EFF14223.1| transcription antitermination factor NusB [Escherichia coli B354]
 gi|294491145|gb|ADE89901.1| transcription termination/antitermination factor NusB [Escherichia
           coli IHE3034]
 gi|298280260|gb|EFI21764.1| N utilization substance protein B [Escherichia coli FVEC1302]
 gi|299880009|gb|EFI88220.1| transcription antitermination factor NusB [Escherichia coli MS
           196-1]
 gi|300298609|gb|EFJ54994.1| transcription antitermination factor NusB [Escherichia coli MS
           185-1]
 gi|300304216|gb|EFJ58736.1| transcription antitermination factor NusB [Escherichia coli MS
           200-1]
 gi|300315317|gb|EFJ65101.1| transcription antitermination factor NusB [Escherichia coli MS
           175-1]
 gi|300355963|gb|EFJ71833.1| transcription antitermination factor NusB [Escherichia coli MS
           198-1]
 gi|300397476|gb|EFJ81014.1| transcription antitermination factor NusB [Escherichia coli MS
           69-1]
 gi|300404614|gb|EFJ88152.1| transcription antitermination factor NusB [Escherichia coli MS
           84-1]
 gi|300407584|gb|EFJ91122.1| transcription antitermination factor NusB [Escherichia coli MS
           45-1]
 gi|300414655|gb|EFJ97965.1| transcription antitermination factor NusB [Escherichia coli MS
           115-1]
 gi|300419589|gb|EFK02900.1| transcription antitermination factor NusB [Escherichia coli MS
           182-1]
 gi|300452533|gb|EFK16153.1| transcription antitermination factor NusB [Escherichia coli MS
           116-1]
 gi|300457856|gb|EFK21349.1| transcription antitermination factor NusB [Escherichia coli MS
           21-1]
 gi|300461861|gb|EFK25354.1| transcription antitermination factor NusB [Escherichia coli MS
           187-1]
 gi|300527130|gb|EFK48199.1| transcription antitermination factor NusB [Escherichia coli MS
           119-7]
 gi|300529151|gb|EFK50213.1| transcription antitermination factor NusB [Escherichia coli MS
           107-1]
 gi|300843061|gb|EFK70821.1| transcription antitermination factor NusB [Escherichia coli MS
           124-1]
 gi|301074483|gb|EFK89289.1| transcription antitermination factor NusB [Escherichia coli MS
           146-1]
 gi|305853881|gb|EFM54320.1| transcription antitermination protein NusB [Escherichia coli NC101]
 gi|306907711|gb|EFN38213.1| NusB antitermination factor [Escherichia coli W]
 gi|307552321|gb|ADN45096.1| N utilization substance protein B [Escherichia coli ABU 83972]
 gi|307628115|gb|ADN72419.1| transcription antitermination protein NusB [Escherichia coli UM146]
 gi|308121512|gb|EFO58774.1| transcription antitermination factor NusB [Escherichia coli MS
           145-7]
 gi|308924581|gb|EFP70076.1| transcription antitermination factor NusB [Shigella dysenteriae
           1617]
 gi|309700678|emb|CBI99974.1| N utilization substance protein B [Escherichia coli ETEC H10407]
 gi|310337160|gb|EFQ02298.1| transcription antitermination factor NusB [Escherichia coli
           1827-70]
 gi|312290796|gb|EFR18673.1| transcription antitermination factor NusB [Escherichia coli
           2362-75]
 gi|312944993|gb|ADR25820.1| transcription antitermination protein NusB [Escherichia coli O83:H1
           str. NRG 857C]
 gi|313646967|gb|EFS11424.1| transcription antitermination factor NusB [Shigella flexneri 2a
           str. 2457T]
 gi|315059693|gb|ADT74020.1| transcription antitermination protein [Escherichia coli W]
 gi|315135098|dbj|BAJ42257.1| N utilization substance protein B-like protein [Escherichia coli
           DH1]
 gi|315256241|gb|EFU36209.1| transcription antitermination factor NusB [Escherichia coli MS
           85-1]
 gi|315289869|gb|EFU49259.1| transcription antitermination factor NusB [Escherichia coli MS
           110-3]
 gi|315294205|gb|EFU53556.1| transcription antitermination factor NusB [Escherichia coli MS
           153-1]
 gi|315299582|gb|EFU58830.1| transcription antitermination factor NusB [Escherichia coli MS
           16-3]
 gi|315616644|gb|EFU97261.1| transcription antitermination factor NusB [Escherichia coli 3431]
 gi|320173766|gb|EFW48949.1| Transcription termination protein NusB [Shigella dysenteriae CDC
           74-1112]
 gi|320181602|gb|EFW56517.1| Transcription termination protein NusB [Shigella boydii ATCC 9905]
 gi|320186045|gb|EFW60790.1| Transcription termination protein NusB [Shigella flexneri CDC
           796-83]
 gi|320192829|gb|EFW67469.1| Transcription termination protein NusB [Escherichia coli O157:H7
           str. EC1212]
 gi|320197146|gb|EFW71763.1| Transcription termination protein NusB [Escherichia coli WV_060327]
 gi|320201657|gb|EFW76233.1| Transcription termination protein NusB [Escherichia coli EC4100B]
 gi|320638408|gb|EFX08122.1| transcription antitermination protein NusB [Escherichia coli
           O157:H7 str. G5101]
 gi|320643788|gb|EFX12911.1| transcription antitermination protein NusB [Escherichia coli
           O157:H- str. 493-89]
 gi|320649139|gb|EFX17717.1| transcription antitermination protein NusB [Escherichia coli
           O157:H- str. H 2687]
 gi|320656032|gb|EFX23948.1| transcription antitermination protein NusB [Escherichia coli O55:H7
           str. 3256-97 TW 07815]
 gi|320661182|gb|EFX28613.1| transcription antitermination protein NusB [Escherichia coli O55:H7
           str. USDA 5905]
 gi|320665158|gb|EFX32251.1| transcription antitermination protein NusB [Escherichia coli
           O157:H7 str. LSU-61]
 gi|323152116|gb|EFZ38409.1| transcription antitermination factor NusB [Escherichia coli
           EPECa14]
 gi|323160477|gb|EFZ46425.1| transcription antitermination factor NusB [Escherichia coli
           E128010]
 gi|323164207|gb|EFZ50014.1| transcription antitermination factor NusB [Shigella sonnei 53G]
 gi|323170498|gb|EFZ56148.1| transcription antitermination factor NusB [Escherichia coli LT-68]
 gi|323178321|gb|EFZ63899.1| transcription antitermination factor NusB [Escherichia coli 1180]
 gi|323184758|gb|EFZ70129.1| transcription antitermination factor NusB [Escherichia coli 1357]
 gi|323191334|gb|EFZ76597.1| transcription antitermination factor NusB [Escherichia coli
           RN587/1]
 gi|323379741|gb|ADX52009.1| NusB antitermination factor [Escherichia coli KO11]
 gi|323938601|gb|EGB34850.1| transcription antitermination protein NusB [Escherichia coli E1520]
 gi|323943222|gb|EGB39378.1| transcription antitermination protein NusB [Escherichia coli E482]
 gi|323945317|gb|EGB41373.1| transcription antitermination protein NusB [Escherichia coli H120]
 gi|323952972|gb|EGB48840.1| transcription antitermination protein NusB [Escherichia coli H252]
 gi|323958609|gb|EGB54312.1| transcription antitermination protein NusB [Escherichia coli H263]
 gi|323963402|gb|EGB58964.1| transcription antitermination protein NusB [Escherichia coli H489]
 gi|323965098|gb|EGB60557.1| transcription antitermination protein NusB [Escherichia coli M863]
 gi|323972266|gb|EGB67476.1| transcription antitermination protein NusB [Escherichia coli TA007]
 gi|323976103|gb|EGB71196.1| transcription antitermination protein NusB [Escherichia coli
           TW10509]
 gi|324010093|gb|EGB79312.1| transcription antitermination factor NusB [Escherichia coli MS
           57-2]
 gi|324010676|gb|EGB79895.1| transcription antitermination factor NusB [Escherichia coli MS
           60-1]
 gi|324016678|gb|EGB85897.1| transcription antitermination factor NusB [Escherichia coli MS
           117-3]
 gi|324116900|gb|EGC10813.1| transcription antitermination protein NusB [Escherichia coli E1167]
 gi|326341177|gb|EGD64969.1| Transcription termination protein NusB [Escherichia coli O157:H7
           str. 1044]
 gi|326346048|gb|EGD69787.1| Transcription termination protein NusB [Escherichia coli O157:H7
           str. 1125]
 gi|327254737|gb|EGE66353.1| transcription antitermination factor NusB [Escherichia coli
           STEC_7v]
 gi|330910210|gb|EGH38720.1| transcription termination protein NusB [Escherichia coli AA86]
 gi|331037731|gb|EGI09951.1| transcription antitermination factor NusB [Escherichia coli H736]
 gi|331045751|gb|EGI17877.1| transcription antitermination factor NusB [Escherichia coli M605]
 gi|331051091|gb|EGI23143.1| transcription antitermination factor NusB [Escherichia coli M718]
 gi|331054718|gb|EGI26727.1| transcription antitermination factor NusB [Escherichia coli TA206]
 gi|331060215|gb|EGI32179.1| transcription antitermination factor NusB [Escherichia coli TA143]
 gi|331065989|gb|EGI37873.1| transcription antitermination factor NusB [Escherichia coli TA271]
 gi|331070950|gb|EGI42309.1| transcription antitermination factor NusB [Escherichia coli TA280]
 gi|331076141|gb|EGI47423.1| transcription antitermination factor NusB [Escherichia coli H591]
 gi|331081011|gb|EGI52176.1| transcription antitermination factor NusB [Escherichia coli H299]
 gi|332086022|gb|EGI91186.1| transcription antitermination factor NusB [Shigella dysenteriae
           155-74]
 gi|332094566|gb|EGI99612.1| transcription antitermination factor NusB [Shigella boydii 5216-82]
 gi|332098578|gb|EGJ03544.1| transcription antitermination factor NusB [Shigella boydii 3594-74]
 gi|332103914|gb|EGJ07260.1| transcription termination/antitermination factor NusB [Shigella sp.
           D9]
 gi|332341779|gb|AEE55113.1| transcription antitermination factor protein NusB [Escherichia coli
           UMNK88]
 gi|332760696|gb|EGJ90984.1| transcription antitermination factor NusB [Shigella flexneri
           4343-70]
 gi|332761743|gb|EGJ92022.1| transcription antitermination factor NusB [Shigella flexneri
           2747-71]
 gi|332764293|gb|EGJ94529.1| transcription antitermination factor NusB [Shigella flexneri K-671]
 gi|332768521|gb|EGJ98704.1| transcription antitermination factor NusB [Shigella flexneri
           2930-71]
 gi|333007978|gb|EGK27454.1| transcription antitermination factor NusB [Shigella flexneri K-218]
 gi|333008611|gb|EGK28079.1| transcription antitermination factor NusB [Shigella flexneri VA-6]
 gi|333010858|gb|EGK30284.1| transcription antitermination factor NusB [Shigella flexneri K-272]
 gi|333021357|gb|EGK40610.1| transcription antitermination factor NusB [Shigella flexneri K-227]
 gi|333022014|gb|EGK41259.1| transcription antitermination factor NusB [Shigella flexneri K-304]
 gi|1096319|prf||2111328A NusB protein
          Length = 139

 Score =  157 bits (399), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 36/134 (26%), Positives = 61/134 (45%), Gaps = 13/134 (9%)

Query: 21  LAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRK 80
             AVQALY   +      ++  ++   +   D           VD+ +FR ++ GV    
Sbjct: 11  ECAVQALYSWQLSQNDIADVEYQFLAEQDVKD-----------VDVLYFRELLAGVATNT 59

Query: 81  QHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYG 140
            ++D L+   L+       L  +  ++LR  + EL +   VP +V I+E + +A  F   
Sbjct: 60  AYLDGLMKPYLSR--LLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAE 117

Query: 141 DEPKFINAVLDKVS 154
           D  KF+N VLDK +
Sbjct: 118 DSHKFVNGVLDKAA 131


>gi|115377906|ref|ZP_01465091.1| transcription antitermination factor NusB [Stigmatella aurantiaca
           DW4/3-1]
 gi|310822844|ref|YP_003955202.1| n utilization substance protein b [Stigmatella aurantiaca DW4/3-1]
 gi|115365066|gb|EAU64116.1| transcription antitermination factor NusB [Stigmatella aurantiaca
           DW4/3-1]
 gi|309395916|gb|ADO73375.1| N utilization substance protein B [Stigmatella aurantiaca DW4/3-1]
          Length = 141

 Score =  157 bits (398), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 36/139 (25%), Positives = 66/139 (47%), Gaps = 7/139 (5%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           R   R  A+QALYQ+++   ++              + + D E+      + + + ++ G
Sbjct: 4   RRTGRERALQALYQLEMTPSTSVHEALASAWAASSEEGKPDPEA------VRFAQELVEG 57

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
           V  R+  +D LI    +  W   R+  I  ++LR GV EL     +P +V I+E V +  
Sbjct: 58  VQTRRAEVDQLIEKH-SHNWRLDRMSRIDRNVLRLGVFELKYRPDIPKKVSINEAVELGK 116

Query: 136 DFFYGDEPKFINAVLDKVS 154
           +F   +   F+N +LD+V+
Sbjct: 117 NFGTEESSAFVNGLLDRVA 135


>gi|220702382|pdb|3D3B|A Chain A, Structural And Functional Analysis Of The E. Coli Nusb-S10
           Transcription Antitermination Complex.
 gi|220702384|pdb|3D3C|A Chain A, Structural And Functional Analysis Of The E. Coli Nusb-S10
           Transcription Antitermination Complex.
 gi|220702386|pdb|3D3C|B Chain B, Structural And Functional Analysis Of The E. Coli Nusb-S10
           Transcription Antitermination Complex.
 gi|220702388|pdb|3D3C|C Chain C, Structural And Functional Analysis Of The E. Coli Nusb-S10
           Transcription Antitermination Complex
          Length = 141

 Score =  157 bits (398), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 36/134 (26%), Positives = 61/134 (45%), Gaps = 13/134 (9%)

Query: 21  LAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRK 80
             AVQALY   +      ++  ++   +   D           VD+ +FR ++ GV    
Sbjct: 13  ECAVQALYSWQLSQNDIADVEYQFLAEQDVKD-----------VDVLYFRELLAGVATNT 61

Query: 81  QHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYG 140
            ++D L+   L+       L  +  ++LR  + EL +   VP +V I+E + +A  F   
Sbjct: 62  AYLDGLMKPYLSR--LLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAE 119

Query: 141 DEPKFINAVLDKVS 154
           D  KF+N VLDK +
Sbjct: 120 DSHKFVNGVLDKAA 133


>gi|50120067|ref|YP_049234.1| transcription antitermination protein NusB [Pectobacterium
           atrosepticum SCRI1043]
 gi|81645878|sp|Q6D847|NUSB_ERWCT RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|49610593|emb|CAG74038.1| N utilization substance protein B [Pectobacterium atrosepticum
           SCRI1043]
          Length = 139

 Score =  157 bits (398), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 37/134 (27%), Positives = 64/134 (47%), Gaps = 13/134 (9%)

Query: 21  LAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRK 80
             AVQALY   +      ++  ++ + +   D           VD+ +FR ++ GV  + 
Sbjct: 11  ECAVQALYSWQLSKNDIADVEHQFLSEQDVKD-----------VDITYFRELLAGVATQA 59

Query: 81  QHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYG 140
           + +D L++  L+       L  +  +ILR  + EL +   VP +V I+E + +A  F   
Sbjct: 60  EKLDQLMAPFLSR--RIDELGQVEKAILRLAMFELSKREDVPYKVAINEAIELAKIFGAE 117

Query: 141 DEPKFINAVLDKVS 154
           D  KF+N VLDK +
Sbjct: 118 DSHKFVNGVLDKAA 131


>gi|229543899|ref|ZP_04432958.1| NusB antitermination factor [Bacillus coagulans 36D1]
 gi|229325038|gb|EEN90714.1| NusB antitermination factor [Bacillus coagulans 36D1]
          Length = 132

 Score =  157 bits (398), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 43/146 (29%), Positives = 64/146 (43%), Gaps = 16/146 (10%)

Query: 15  RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74
           +R  AR  A+QAL+Q+D+   S  + I      +   D               +   +++
Sbjct: 3   KRRTAREKALQALFQMDMNEASPEDAIRNALDGQESDD---------------YLEKLVN 47

Query: 75  GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134
           G       ID +IS  L E W+  RL  +  +ILR    EL+    VP  V I+E + IA
Sbjct: 48  GTATHLAEIDAMISQHL-ENWTLDRLAKVELNILRLAAYELMYAEDVPANVAINEALEIA 106

Query: 135 HDFFYGDEPKFINAVLDKVSRKEEIK 160
             F      KFIN VL+++    E K
Sbjct: 107 KRFADEKSAKFINGVLNQMKDSIESK 132


>gi|296333411|ref|ZP_06875864.1| transcription antitermination protein NusB [Bacillus subtilis
           subsp. spizizenii ATCC 6633]
 gi|305675083|ref|YP_003866755.1| transcription antitermination protein NusB [Bacillus subtilis
           subsp. spizizenii str. W23]
 gi|296149609|gb|EFG90505.1| transcription antitermination protein NusB [Bacillus subtilis
           subsp. spizizenii ATCC 6633]
 gi|305413327|gb|ADM38446.1| transcription antitermination protein NusB [Bacillus subtilis
           subsp. spizizenii str. W23]
          Length = 131

 Score =  157 bits (398), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 38/144 (26%), Positives = 62/144 (43%), Gaps = 16/144 (11%)

Query: 15  RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74
           +R  AR  A+QAL+QID+   +  E I                          +F  ++H
Sbjct: 2   KRRTAREKALQALFQIDVSDIAVNEAIEHALDEEKTD---------------PFFEQLVH 46

Query: 75  GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134
           GV++ +  +D +IS  L   W   R+  +  +ILR    E+     +PV V ++E + +A
Sbjct: 47  GVLEHQVQLDEMISKHLV-NWKLDRIANVDRAILRLAAYEMAYAEDIPVNVSMNEAIELA 105

Query: 135 HDFFYGDEPKFINAVLDKVSRKEE 158
             F      KF+N VL  +    E
Sbjct: 106 KRFGDDKATKFVNGVLSNIKSDIE 129


>gi|296115207|ref|ZP_06833848.1| NusB antitermination factor [Gluconacetobacter hansenii ATCC 23769]
 gi|295978308|gb|EFG85045.1| NusB antitermination factor [Gluconacetobacter hansenii ATCC 23769]
          Length = 183

 Score =  157 bits (398), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 52/167 (31%), Positives = 85/167 (50%), Gaps = 2/167 (1%)

Query: 4   QDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRF--CADTELDVESVY 61
            D+      +  R  +R+ AVQAL+QI+  G +   ++S++  +R      +    E   
Sbjct: 9   PDDTPRKDRNRSRTASRVGAVQALFQIEQGGDNAENVVSQFTHHRLPTGKTSLGYAEGQV 68

Query: 62  LHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSV 121
              D+  F  I+ G + R+  ID +++  L   W   RLD +L ++LRA   EL      
Sbjct: 69  PDADIRLFTAIVRGSVARQADIDAMVADVLPASWPMDRLDPVLRALLRAAGGELTAQDPA 128

Query: 122 PVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRSGCVSAI 168
           P  VII+EY+ +AH FF GDEP+ +N VLD +SR+     +   + +
Sbjct: 129 PSRVIINEYMDVAHGFFSGDEPRMLNGVLDAMSRRIAGTEAAPATPV 175


>gi|157692931|ref|YP_001487393.1| transcription antitermination protein NusB [Bacillus pumilus
           SAFR-032]
 gi|166918803|sp|A8FF16|NUSB_BACP2 RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|157681689|gb|ABV62833.1| transcription antitermination protein NusB [Bacillus pumilus
           SAFR-032]
          Length = 131

 Score =  157 bits (398), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 40/148 (27%), Positives = 69/148 (46%), Gaps = 18/148 (12%)

Query: 15  RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74
           +R  AR  A+Q L+QID+      E I+     +                   +F  ++ 
Sbjct: 2   KRRTAREKALQTLFQIDVSNIDPKEAITHALDEQESD---------------PFFEELVF 46

Query: 75  GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134
           GV+++K  +D +IS  L   W   R+  +  +ILR  V E++    +PV V ++E + +A
Sbjct: 47  GVLEQKDKLDDMISQHLV-NWKLDRIANVDRAILRLSVYEMVYQEDIPVSVSMNEAIELA 105

Query: 135 HDFFYGDEPKFINAVLDKVSRKEEIKRS 162
             F     PKF+N VL  +  K ++K+ 
Sbjct: 106 KLFGDDKAPKFVNGVLSNI--KNDLKQQ 131


>gi|190572778|ref|YP_001970623.1| transcription antitermination protein NusB [Stenotrophomonas
           maltophilia K279a]
 gi|229620370|sp|B2FNL4|NUSB_STRMK RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|190010700|emb|CAQ44309.1| putative N utilization substance protein B (protein nusb)
           [Stenotrophomonas maltophilia K279a]
          Length = 159

 Score =  157 bits (398), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 44/168 (26%), Positives = 68/168 (40%), Gaps = 20/168 (11%)

Query: 3   IQDNKKDLKLSHR-------RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTEL 55
               K   K   R       R  AR  AVQA+Y   I G +   +I+++           
Sbjct: 4   NTQGKPSGKPVRRDGVDPVLRSRARRRAVQAIYAWQISGGNAQSLIAQFAH--------- 54

Query: 56  DVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLEL 115
             E      DL +F  ++HGV+D ++ ID  +   L        +D I  ++LR    EL
Sbjct: 55  --EQAREIADLAYFEALLHGVLDNRRDIDEALGPYLDRG--IEEVDAIERAVLRLAGYEL 110

Query: 116 IECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRSG 163
                VP  V+I+E +  A  F       ++N VLD+ + +     SG
Sbjct: 111 RYRLDVPYRVVINEAIESAKRFGSEHGHTYVNGVLDRAAVEWRKVESG 158


>gi|294678589|ref|YP_003579204.1| transcription antitermination factor NusB [Rhodobacter capsulatus
           SB 1003]
 gi|294477409|gb|ADE86797.1| transcription antitermination factor NusB [Rhodobacter capsulatus
           SB 1003]
          Length = 165

 Score =  157 bits (398), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 53/166 (31%), Positives = 83/166 (50%), Gaps = 9/166 (5%)

Query: 1   MTIQDNKKDLKLS-----HRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTEL 55
           MT     K  K S       R  ARL AVQAL+Q++  G     +  E+E++RF   T  
Sbjct: 1   MTDTTPDKPRKPSPEEKRRMRSAARLYAVQALFQMEAAGQGVDRVAREFESFRFGMVT-- 58

Query: 56  DVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLEL 115
           D        D + FR ++   +  +  ID      L   W   R+D +L ++ RA   E+
Sbjct: 59  DEGEELAEGDYDLFRRLLDDAVMWQAKIDQTTDRALVATWPIERIDPVLRALFRAAGAEM 118

Query: 116 IECHSVPVEVIISEYVCIAHDFF-YGDEPKFINAVLDKVSRKEEIK 160
           +   + P++V+I+E+V +A  FF  G E KF+NAVLD ++R+   +
Sbjct: 119 VN-PATPIKVVINEFVEVARAFFPEGKETKFVNAVLDHMAREVRPE 163


>gi|332288213|ref|YP_004419065.1| transcription antitermination protein NusB [Gallibacterium anatis
           UMN179]
 gi|330431109|gb|AEC16168.1| transcription antitermination protein NusB [Gallibacterium anatis
           UMN179]
          Length = 145

 Score =  157 bits (398), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 44/160 (27%), Positives = 71/160 (44%), Gaps = 15/160 (9%)

Query: 1   MTIQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESV 60
           M  Q  +K  K   +R  AR   VQALY   I   S   I           + +L     
Sbjct: 1   MNPQ--QKTEKKPSKRRRARECTVQALYSWFISKNSPESI-----------ELDLVTNDE 47

Query: 61  YLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHS 120
               D+ +FR + +G ++   +++   +S L  K     L  I  +IL     EL     
Sbjct: 48  TKGADVVYFRKLFNGTVNNLDNLEQEYASFLDRK--IEELGTIERAILDCATFELKYVDD 105

Query: 121 VPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIK 160
           +P +V+I+E + +A  F   D  K+IN++LDK++ K  +K
Sbjct: 106 IPYKVVINEAIEVAKTFGASDSHKYINSILDKLAPKFGLK 145


>gi|162147540|ref|YP_001602001.1| N utilization substance protein B-like protein [Gluconacetobacter
           diazotrophicus PAl 5]
 gi|209545645|ref|YP_002277874.1| NusB antitermination factor [Gluconacetobacter diazotrophicus PAl
           5]
 gi|161786117|emb|CAP55699.1| N utilization substance protein B homolog [Gluconacetobacter
           diazotrophicus PAl 5]
 gi|209533322|gb|ACI53259.1| NusB antitermination factor [Gluconacetobacter diazotrophicus PAl
           5]
          Length = 183

 Score =  157 bits (398), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 56/162 (34%), Positives = 83/162 (51%), Gaps = 5/162 (3%)

Query: 3   IQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVY- 61
           I D+ +       R  +R+A VQAL+QI+  G +   +I+++  +R    +  D    Y 
Sbjct: 4   IPDDDRTHSKPRSRTASRVAVVQALFQIEQAGDTPDTVIAQFLRHRLGTASGADQGEEYE 63

Query: 62  ----LHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIE 117
                  D+  F  +    + R++ ID LI   L   W   RLD +L ++LRA   EL  
Sbjct: 64  DGRVPEADIRLFEQVARAAVARREQIDALIVEVLPPSWPVGRLDPVLRALLRAAGAELAA 123

Query: 118 CHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEI 159
              VP  VII+EY+ IAH FF GDEPK +N VLD ++R+   
Sbjct: 124 TGGVPTRVIINEYLDIAHGFFSGDEPKMVNGVLDTLARRLRA 165


>gi|301330723|ref|ZP_07223325.1| transcription antitermination factor NusB [Escherichia coli MS
           78-1]
 gi|300843384|gb|EFK71144.1| transcription antitermination factor NusB [Escherichia coli MS
           78-1]
          Length = 139

 Score =  157 bits (397), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 36/134 (26%), Positives = 60/134 (44%), Gaps = 13/134 (9%)

Query: 21  LAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRK 80
             AVQALY   +      ++  ++   +   D           VD+ +FR ++ GV    
Sbjct: 11  ECAVQALYSWQLSQNDIADVEYQFLAEQDVKD-----------VDVLYFRELLAGVATNT 59

Query: 81  QHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYG 140
             +D L+   L+       L  +  ++LR  + EL +   VP +V I+E + +A  F   
Sbjct: 60  ASLDGLMKPYLSR--LLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAE 117

Query: 141 DEPKFINAVLDKVS 154
           D  KF+N VLDK +
Sbjct: 118 DSHKFVNGVLDKAA 131


>gi|163733974|ref|ZP_02141415.1| N utilization substance protein B-like protein, putative
           [Roseobacter litoralis Och 149]
 gi|161392510|gb|EDQ16838.1| N utilization substance protein B-like protein, putative
           [Roseobacter litoralis Och 149]
          Length = 160

 Score =  157 bits (397), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 51/154 (33%), Positives = 78/154 (50%), Gaps = 8/154 (5%)

Query: 9   DLKLSHRR---GIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVD 65
           +L  + RR     ARL AVQAL+Q++  G +   +  E+  +RF    +       L  D
Sbjct: 7   NLSGNQRRKMKSAARLYAVQALFQMEHSGQTIEIVRREFLEHRFGETYDGQE---MLDGD 63

Query: 66  LEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEV 125
           ++ F  +I G ++ +  ID +    L  KW   R+D  L ++ RA   EL      P +V
Sbjct: 64  VDLFDTVIEGAVNFQAPIDQMTDRALVAKWPLGRIDPTLRALFRAAGAEL-NGKDTPPKV 122

Query: 126 IISEYVCIAHDFFYG-DEPKFINAVLDKVSRKEE 158
           +ISEYV +A  FF    EPK +N VLD ++R+  
Sbjct: 123 VISEYVDVARAFFEDGKEPKLVNGVLDHMAREAR 156


>gi|149185970|ref|ZP_01864285.1| NusB antitermination factor [Erythrobacter sp. SD-21]
 gi|148830531|gb|EDL48967.1| NusB antitermination factor [Erythrobacter sp. SD-21]
          Length = 150

 Score =  157 bits (397), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 56/145 (38%), Positives = 83/145 (57%), Gaps = 3/145 (2%)

Query: 12  LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71
            S  R  ARL AVQALYQ  + G +T ++++E+  +R     E   +  Y   D+++F  
Sbjct: 6   KSQSRSAARLGAVQALYQQQMEGTATAKLLNEFHLHRLGKVIE---DEEYADADVDFFDD 62

Query: 72  IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
           ++ GV  R+  ID L+++ L   W+ +RLD  +  ILRAG  ELI    VP    ISEYV
Sbjct: 63  LVKGVDARRAEIDELLTARLASGWTLARLDKTMLQILRAGSYELIARKDVPKAAAISEYV 122

Query: 132 CIAHDFFYGDEPKFINAVLDKVSRK 156
            +A  FF   E KF+N +LD V+++
Sbjct: 123 DVAKAFFDDREAKFVNGILDAVAKE 147


>gi|238795564|ref|ZP_04639079.1| N utilization substance protein B [Yersinia mollaretii ATCC 43969]
 gi|238720683|gb|EEQ12484.1| N utilization substance protein B [Yersinia mollaretii ATCC 43969]
          Length = 138

 Score =  157 bits (397), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 36/134 (26%), Positives = 63/134 (47%), Gaps = 13/134 (9%)

Query: 21  LAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRK 80
             AVQA+Y   +      ++  ++ +           E     VD+ +FR ++ GV    
Sbjct: 11  ECAVQAIYSWQLSKNDIADVELQFLS-----------EQDVKDVDIAYFRELLSGVAVNA 59

Query: 81  QHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYG 140
             +D L++  L+ +     L  +  ++LR  + EL +   VP +V I+E + +A  F   
Sbjct: 60  ASLDALMAPFLSRQ--LEELGQVERAVLRIALFELSKREDVPYKVAINEAIELAKTFGAE 117

Query: 141 DEPKFINAVLDKVS 154
           D  KF+N VLDKV+
Sbjct: 118 DSHKFVNGVLDKVA 131


>gi|52080965|ref|YP_079756.1| transcription antitermination protein NusB [Bacillus licheniformis
           ATCC 14580]
 gi|52786341|ref|YP_092170.1| transcription antitermination protein NusB [Bacillus licheniformis
           ATCC 14580]
 gi|319645077|ref|ZP_07999310.1| N utilization substance protein B [Bacillus sp. BT1B_CT2]
 gi|81609065|sp|Q65HI7|NUSB_BACLD RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|52004176|gb|AAU24118.1| NusB [Bacillus licheniformis ATCC 14580]
 gi|52348843|gb|AAU41477.1| NusB [Bacillus licheniformis ATCC 14580]
 gi|317392886|gb|EFV73680.1| N utilization substance protein B [Bacillus sp. BT1B_CT2]
          Length = 129

 Score =  157 bits (397), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 38/144 (26%), Positives = 63/144 (43%), Gaps = 16/144 (11%)

Query: 15  RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74
           +R  AR  A+Q+L+QID+      E +      +                   +F  +++
Sbjct: 2   KRRTAREKALQSLFQIDVSDIEPNEAMQHALDGQESD---------------AFFEQLVY 46

Query: 75  GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134
           GV++ K+ ID +I   L   W   RL  +  +ILR    E+I    +PV V ++E + +A
Sbjct: 47  GVLENKEKIDEMIKRHLV-NWKLDRLANVDRAILRLSAYEMIFLDDIPVNVSMNEAIELA 105

Query: 135 HDFFYGDEPKFINAVLDKVSRKEE 158
             F      KF+N VL  +    E
Sbjct: 106 KQFGDDKSAKFVNGVLSNIKSDLE 129


>gi|194364362|ref|YP_002026972.1| transcription antitermination protein NusB [Stenotrophomonas
           maltophilia R551-3]
 gi|238693436|sp|B4SJC1|NUSB_STRM5 RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|194347166|gb|ACF50289.1| NusB antitermination factor [Stenotrophomonas maltophilia R551-3]
          Length = 159

 Score =  157 bits (397), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 44/168 (26%), Positives = 68/168 (40%), Gaps = 20/168 (11%)

Query: 3   IQDNKKDLKLSHR-------RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTEL 55
               K   K   R       R  AR  AVQA+Y   I G +   +I+++           
Sbjct: 4   NTQGKPSGKPVRRDGVDPVLRSRARRRAVQAIYAWQISGGNAQSLIAQFAH--------- 54

Query: 56  DVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLEL 115
             E      DL +F  ++HGV+D ++ ID  +   L        +D I  ++LR    EL
Sbjct: 55  --EQAREIADLAYFEALMHGVLDNRRDIDEALGPYLDRG--IEEVDAIERAVLRLAGYEL 110

Query: 116 IECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRSG 163
                VP  V+I+E +  A  F       ++N VLD+ + +     SG
Sbjct: 111 RYRLDVPYRVVINEAIESAKRFGSEHGHTYVNGVLDRAAVELRKVESG 158


>gi|254516860|ref|ZP_05128918.1| transcription antitermination factor NusB [gamma proteobacterium
           NOR5-3]
 gi|219674365|gb|EED30733.1| transcription antitermination factor NusB [gamma proteobacterium
           NOR5-3]
          Length = 150

 Score =  157 bits (397), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 52/148 (35%), Positives = 76/148 (51%), Gaps = 13/148 (8%)

Query: 14  HRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVII 73
            RR  AR  A+QALYQ  + G   ++I +E+ T           +  +  VDLE+F+ +I
Sbjct: 11  ARRRKARHYALQALYQWHMAGARPSDIEAEFRT-----------DYDFEVVDLEYFQALI 59

Query: 74  HGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCI 133
           HGV    Q +D L+   L  +     LD I  S+LR G  EL +   VP  V+I+E V +
Sbjct: 60  HGVPPLAQELDSLLEPLLDRE--LRELDPIERSLLRMGGFELRDRIDVPYRVVINESVAL 117

Query: 134 AHDFFYGDEPKFINAVLDKVSRKEEIKR 161
           A  F   +  K+IN VLDK++R+     
Sbjct: 118 AKKFGAAESYKYINGVLDKLARQLRGPE 145


>gi|123443366|ref|YP_001007340.1| transcription antitermination protein NusB [Yersinia enterocolitica
           subsp. enterocolitica 8081]
 gi|332160727|ref|YP_004297304.1| transcription antitermination protein NusB [Yersinia enterocolitica
           subsp. palearctica 105.5R(r)]
 gi|166215729|sp|A1JNS2|NUSB_YERE8 RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|122090327|emb|CAL13193.1| N utilization substance protein B [Yersinia enterocolitica subsp.
           enterocolitica 8081]
 gi|318604606|emb|CBY26104.1| transcription termination protein NusB [Yersinia enterocolitica
           subsp. palearctica Y11]
 gi|325664957|gb|ADZ41601.1| transcription antitermination protein NusB [Yersinia enterocolitica
           subsp. palearctica 105.5R(r)]
 gi|330863853|emb|CBX73946.1| N utilization substance protein B homolog [Yersinia enterocolitica
           W22703]
          Length = 138

 Score =  157 bits (397), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 37/134 (27%), Positives = 64/134 (47%), Gaps = 13/134 (9%)

Query: 21  LAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRK 80
             AVQALY   +      ++  ++ + +   D           VD+ +FR ++ GV    
Sbjct: 11  ECAVQALYSWQLSKNDIADVELQFLSEQDVKD-----------VDIAYFRELLSGVAVNA 59

Query: 81  QHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYG 140
             +D L++  L+ +     L  +  ++LR  + EL +   VP +V I+E + +A  F   
Sbjct: 60  ASLDALMAPVLSRQ--LEELGQVERAVLRIALFELSKRDDVPYKVAINEAIELAKTFGAA 117

Query: 141 DEPKFINAVLDKVS 154
           D  KF+N VLDKV+
Sbjct: 118 DSHKFVNGVLDKVA 131


>gi|89055903|ref|YP_511354.1| NusB antitermination factor [Jannaschia sp. CCS1]
 gi|88865452|gb|ABD56329.1| NusB antitermination factor [Jannaschia sp. CCS1]
          Length = 165

 Score =  157 bits (397), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 58/160 (36%), Positives = 88/160 (55%), Gaps = 10/160 (6%)

Query: 2   TIQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVY 61
             +D K+ +     R  ARL AVQAL+Q++    S  E+  E+ET+RF A  E D     
Sbjct: 13  PSRDEKRQM-----RSAARLYAVQALFQMEHSNQSLDEVRQEFETHRFGAVYEGDE---L 64

Query: 62  LHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSV 121
              D   FR  + G ++R+  ID +    L  KW   R+D  L ++ RA   EL+E  + 
Sbjct: 65  AEGDPNLFRRTLEGAVERQALIDQMTDRALVAKWPIDRIDPTLRALFRAAGAELVEG-TA 123

Query: 122 PVEVIISEYVCIAHDFF-YGDEPKFINAVLDKVSRKEEIK 160
           P +V+I+E+V +A  FF  G E KF+NAVLD ++R+ + +
Sbjct: 124 PPKVVITEFVDVARAFFPEGKEAKFVNAVLDHMAREAKPE 163


>gi|160897907|ref|YP_001563489.1| NusB antitermination factor [Delftia acidovorans SPH-1]
 gi|238687189|sp|A9BVN7|NUSB_DELAS RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|160363491|gb|ABX35104.1| NusB antitermination factor [Delftia acidovorans SPH-1]
          Length = 212

 Score =  157 bits (397), Expect = 7e-37,   Method: Composition-based stats.
 Identities = 48/175 (27%), Positives = 81/175 (46%), Gaps = 19/175 (10%)

Query: 1   MTIQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESV 60
           +T    +K    S+ R  AR  A+QALYQ  + G     I       RF  D      S 
Sbjct: 21  LTSTGARKAASKSN-RSRAREFALQALYQHLVGGNDVEAI------DRFTRDL-----SG 68

Query: 61  YLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHS 120
           +   D   +  ++ G ++ +  +D LI+  L    + + +  I  + +  GV E   C  
Sbjct: 69  FHKADSVHYDALLRGCINSQVDLDALIAPKLDR--TMAEISPIEHASMWIGVYEFQHCPD 126

Query: 121 VPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVS---RKEEIK--RSGCVSAITQ 170
           VP  V+++E + +A +F   D  K++NAVL+ ++   R  E++  R+G  SA  Q
Sbjct: 127 VPWRVVLNECIELAKEFGGTDGHKYVNAVLNGLAPTLRAAEVEHDRAGKGSAPAQ 181


>gi|238755140|ref|ZP_04616487.1| N utilization substance protein B [Yersinia ruckeri ATCC 29473]
 gi|238706700|gb|EEP99070.1| N utilization substance protein B [Yersinia ruckeri ATCC 29473]
          Length = 138

 Score =  157 bits (397), Expect = 7e-37,   Method: Composition-based stats.
 Identities = 36/134 (26%), Positives = 63/134 (47%), Gaps = 13/134 (9%)

Query: 21  LAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRK 80
             AVQA+Y   +      ++  ++ + +   D           VD+ +FR ++ GV    
Sbjct: 11  ECAVQAIYSWQLSKNDIADVELQFLSEQDVKD-----------VDITYFRELLSGVAVNV 59

Query: 81  QHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYG 140
             +D  ++  L+ +     L  +  +ILR  + EL +   VP +V I+E + +A  F   
Sbjct: 60  TALDASMAPYLSRQ--LEELGQVEKAILRLAIFELSKRDDVPYKVAINEAIELAKIFGAE 117

Query: 141 DEPKFINAVLDKVS 154
           D  KF+N VLDKV+
Sbjct: 118 DSHKFVNGVLDKVA 131


>gi|255263487|ref|ZP_05342829.1| transcription antitermination factor NusB [Thalassiobium sp. R2A62]
 gi|255105822|gb|EET48496.1| transcription antitermination factor NusB [Thalassiobium sp. R2A62]
          Length = 157

 Score =  156 bits (396), Expect = 7e-37,   Method: Composition-based stats.
 Identities = 55/157 (35%), Positives = 85/157 (54%), Gaps = 5/157 (3%)

Query: 3   IQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYL 62
           + D     +    R  ARL A QALYQ+++ G +   +  E+ETYRF    + D      
Sbjct: 1   MTDKPSGNQKRKMRSAARLFATQALYQMELSGQTVDAVRQEFETYRFGEVIDGDE---LA 57

Query: 63  HVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVP 122
             D+E FR ++   ++ +  ID +    L  KW+  R+D  L ++ RA   EL +  S P
Sbjct: 58  EGDVETFRDLLENAVNHQALIDQMTDRALVAKWAIDRIDPTLRALFRAAGAELTQS-STP 116

Query: 123 VEVIISEYVCIAHDFF-YGDEPKFINAVLDKVSRKEE 158
            +V+I E+V +A  FF  G EPKF+NAVLD ++R+ +
Sbjct: 117 PKVVIVEFVDVAVAFFPEGKEPKFVNAVLDHMAREAQ 153


>gi|89093481|ref|ZP_01166429.1| NusB protein [Oceanospirillum sp. MED92]
 gi|89082171|gb|EAR61395.1| NusB protein [Oceanospirillum sp. MED92]
          Length = 159

 Score =  156 bits (396), Expect = 8e-37,   Method: Composition-based stats.
 Identities = 46/160 (28%), Positives = 75/160 (46%), Gaps = 17/160 (10%)

Query: 1   MTIQDNKKDLK----LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELD 56
           M+  +NK   K    L+ +R  AR  A+QALY   + G    E+ +++            
Sbjct: 1   MSENENKPAKKKKPSLTTQRRNARSYALQALYSWTLAGQPLNELEAQFR----------- 49

Query: 57  VESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELI 116
           V++     D+  F  ++H +   K  +D L +  L        LD I  ++LR G  EL 
Sbjct: 50  VDNDMRDTDIRLFSELLHSIAGGKSELDQLYTDFLDRN--VDELDPIELNVLRIGAYELS 107

Query: 117 ECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRK 156
           +   VP  V I+E V +A  F   D  K++N VLDK++++
Sbjct: 108 KRFEVPYRVAINESVELAKTFGATDSHKYVNGVLDKLAQR 147


>gi|83955701|ref|ZP_00964281.1| transcription antitermination factor NusB [Sulfitobacter sp.
           NAS-14.1]
 gi|83839995|gb|EAP79171.1| transcription antitermination factor NusB [Sulfitobacter sp.
           NAS-14.1]
          Length = 159

 Score =  156 bits (396), Expect = 8e-37,   Method: Composition-based stats.
 Identities = 50/162 (30%), Positives = 81/162 (50%), Gaps = 5/162 (3%)

Query: 1   MTIQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESV 60
           MT        +    +  +RL AVQAL+Q++    S   +  E+  +RF A  +      
Sbjct: 1   MTSSAGLSGNQKRKMKSASRLYAVQALFQMEHSSQSFDTVRKEFLEHRFGATYDGQE--- 57

Query: 61  YLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHS 120
            +  D+  F  ++   ++ +  ID +    L  KW+ +R+D  L ++ RA   EL     
Sbjct: 58  MIDGDIRHFADLLETAVNYQAAIDQMTDRALVAKWAIARIDPTLRALFRAAGAELR-AQE 116

Query: 121 VPVEVIISEYVCIAHDFF-YGDEPKFINAVLDKVSRKEEIKR 161
            P  V+I+EYV +A  FF  GDEPKF+NAVLD ++R+   + 
Sbjct: 117 TPPRVVINEYVDVARAFFEGGDEPKFVNAVLDHMAREARPEE 158


>gi|261405951|ref|YP_003242192.1| NusB antitermination factor [Paenibacillus sp. Y412MC10]
 gi|329924770|ref|ZP_08279759.1| transcription antitermination factor NusB [Paenibacillus sp. HGF5]
 gi|261282414|gb|ACX64385.1| NusB antitermination factor [Paenibacillus sp. Y412MC10]
 gi|328940435|gb|EGG36758.1| transcription antitermination factor NusB [Paenibacillus sp. HGF5]
          Length = 152

 Score =  156 bits (396), Expect = 8e-37,   Method: Composition-based stats.
 Identities = 38/144 (26%), Positives = 71/144 (49%), Gaps = 2/144 (1%)

Query: 15  RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74
           +R +AR   VQ+LYQ+++    + E +S   +     + E +          E+   +++
Sbjct: 2   KRRVAREIVVQSLYQMEMNEVDSMEAVSMLLSEA-AEENETERVIGDEVQMKEYVLQLVN 60

Query: 75  GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134
           G  + K  ID L++  L + W  SRL  +   ILR  V EL     VP +V ++E + ++
Sbjct: 61  GTWESKDSIDELLAHYL-KGWQVSRLSRVDRQILRLAVYELTYRDDVPGKVAVNEAIELS 119

Query: 135 HDFFYGDEPKFINAVLDKVSRKEE 158
             F   +  KF+N VL ++ ++ +
Sbjct: 120 KHFGTEESGKFVNGVLGRMIQELD 143


>gi|83941142|ref|ZP_00953604.1| transcription antitermination factor NusB [Sulfitobacter sp. EE-36]
 gi|83846962|gb|EAP84837.1| transcription antitermination factor NusB [Sulfitobacter sp. EE-36]
          Length = 159

 Score =  156 bits (396), Expect = 8e-37,   Method: Composition-based stats.
 Identities = 50/162 (30%), Positives = 81/162 (50%), Gaps = 5/162 (3%)

Query: 1   MTIQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESV 60
           MT        +    +  +RL AVQAL+Q++    S   +  E+  +RF A  +      
Sbjct: 1   MTSSAGLSGNQKRKMKSASRLYAVQALFQMEHSSQSFDTVRKEFLEHRFGASYDGQE--- 57

Query: 61  YLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHS 120
            +  D+  F  ++   ++ +  ID +    L  KW+ +R+D  L ++ RA   EL     
Sbjct: 58  MIDGDIRHFADLLETAVNYQAAIDQMTDRALVAKWAIARIDPTLRALFRAAGAELR-AQE 116

Query: 121 VPVEVIISEYVCIAHDFF-YGDEPKFINAVLDKVSRKEEIKR 161
            P  V+I+EYV +A  FF  GDEPKF+NAVLD ++R+   + 
Sbjct: 117 TPPRVVINEYVDVARAFFEGGDEPKFVNAVLDHMAREARPEE 158


>gi|254460442|ref|ZP_05073858.1| transcription antitermination factor NusB [Rhodobacterales
           bacterium HTCC2083]
 gi|206677031|gb|EDZ41518.1| transcription antitermination factor NusB [Rhodobacteraceae
           bacterium HTCC2083]
          Length = 157

 Score =  156 bits (396), Expect = 9e-37,   Method: Composition-based stats.
 Identities = 53/155 (34%), Positives = 87/155 (56%), Gaps = 10/155 (6%)

Query: 5   DNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHV 64
           + K+ +K       AR  AVQALYQ+++ G +T +II E+  +RF A  E   +  ++  
Sbjct: 8   NAKRKMK-----SAARFYAVQALYQMEVSGQTTDKIIVEFLDHRFGAVYE---DMEFVEG 59

Query: 65  DLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVE 124
           D++ F  +++  ++ +  ID +    L  KW  +R+D  L  + RA   EL+     P +
Sbjct: 60  DVDLFSSLVNDAVNHQAQIDQMTDRALVAKWPIARIDPTLRGLFRAAGAELV-ASDTPPK 118

Query: 125 VIISEYVCIAHDFF-YGDEPKFINAVLDKVSRKEE 158
           V+I E+V IA  FF  G E +F+NAVLD V+R+ +
Sbjct: 119 VVIKEFVDIAAAFFPEGKESRFVNAVLDHVAREAK 153


>gi|238765184|ref|ZP_04626116.1| N utilization substance protein B [Yersinia kristensenii ATCC
           33638]
 gi|238696618|gb|EEP89403.1| N utilization substance protein B [Yersinia kristensenii ATCC
           33638]
          Length = 138

 Score =  156 bits (396), Expect = 9e-37,   Method: Composition-based stats.
 Identities = 37/134 (27%), Positives = 63/134 (47%), Gaps = 13/134 (9%)

Query: 21  LAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRK 80
             AVQALY   +      ++  ++ +           E     VD+ +FR ++ GV    
Sbjct: 11  ECAVQALYSWQLSKNDIADVELQFLS-----------EQDVKDVDIAYFRELLSGVAVNA 59

Query: 81  QHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYG 140
             +D L++  L+ +     L  +  ++LR  + EL +   VP +V I+E + +A  F   
Sbjct: 60  ASLDALMAPVLSRQ--LEELGQVERAVLRIALFELSKRDDVPYKVAINEAIELAKTFGAA 117

Query: 141 DEPKFINAVLDKVS 154
           D  KF+N VLDKV+
Sbjct: 118 DSHKFVNGVLDKVA 131


>gi|119474641|ref|ZP_01614994.1| transcription antitermination protein NusB [marine gamma
           proteobacterium HTCC2143]
 gi|119450844|gb|EAW32077.1| transcription antitermination protein NusB [marine gamma
           proteobacterium HTCC2143]
          Length = 158

 Score =  156 bits (396), Expect = 9e-37,   Method: Composition-based stats.
 Identities = 49/161 (30%), Positives = 78/161 (48%), Gaps = 17/161 (10%)

Query: 5   DNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHV 64
            NK++   + RR  AR   +QALYQ  +   +  +I  ++             +  +  V
Sbjct: 6   SNKQEFNPAARR-KARHYGMQALYQWQMTKYAVKDIELQFLA-----------DYDFSQV 53

Query: 65  DLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVE 124
           D+E+F  I+H V    + ++   +  L    +   LD I  S+LR G  ELI+   +P +
Sbjct: 54  DVEYFHDIVHHVPANLEELEAAFTPYLDR--AMGDLDPIELSLLRLGSYELIKRIDIPYK 111

Query: 125 VIISEYVCIAHDFFYGDEPKFINAVLDKVS---RKEEIKRS 162
           V+I+E V +A  F   D  K+IN VLDK++   R  EIK  
Sbjct: 112 VVINEAVSLAKKFGATDGHKYINGVLDKLAAQVRTIEIKAQ 152


>gi|326793813|ref|YP_004311633.1| NusB antitermination factor [Marinomonas mediterranea MMB-1]
 gi|326544577|gb|ADZ89797.1| NusB antitermination factor [Marinomonas mediterranea MMB-1]
          Length = 162

 Score =  156 bits (395), Expect = 9e-37,   Method: Composition-based stats.
 Identities = 50/169 (29%), Positives = 80/169 (47%), Gaps = 20/169 (11%)

Query: 2   TIQDNKKDLKLSHR--RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVES 59
           +    KK  K S    R  +R  A+QA+YQ  +   +  EI +++            +E 
Sbjct: 7   SNTQPKKAKKPSRSQLRSASRGLALQAIYQWQMNHSAVNEIETQFT-----------LEQ 55

Query: 60  VYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECH 119
                D  +FR ++ GV  + + +D L    L    + S LD I  ++LR G  EL    
Sbjct: 56  DMSACDKVYFRDLLQGVTAKAKELDSLFEELLDR--ALSELDAIELAVLRIGSYELAHRL 113

Query: 120 SVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVS---RKEEI--KRSG 163
            VP  V I+E V +A  F   +  K++N +LDK++   R+EEI  +R+G
Sbjct: 114 DVPYRVAINESVELAKSFGASESHKYVNGILDKLAQRVRREEIAARRNG 162


>gi|326386550|ref|ZP_08208172.1| NusB antitermination factor [Novosphingobium nitrogenifigens DSM
           19370]
 gi|326208865|gb|EGD59660.1| NusB antitermination factor [Novosphingobium nitrogenifigens DSM
           19370]
          Length = 148

 Score =  156 bits (395), Expect = 9e-37,   Method: Composition-based stats.
 Identities = 53/144 (36%), Positives = 83/144 (57%), Gaps = 3/144 (2%)

Query: 13  SHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVI 72
           +  R  ARLAAVQALYQ+++     T ++ E+  +R   + E   +  YL  D+ +F  +
Sbjct: 6   AKARSAARLAAVQALYQLEMEQPELTTLLDEFHRHRLGREIE---DVEYLDADVAFFDDV 62

Query: 73  IHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVC 132
           + GV+ R+  ID  ++  L + WS SRLD  +  ILRAG  EL+    + V  +I EY+ 
Sbjct: 63  VKGVVARRDEIDAKLTERLAQGWSLSRLDKTMLQILRAGTYELLARSDIGVGTVIDEYLD 122

Query: 133 IAHDFFYGDEPKFINAVLDKVSRK 156
           +AH FF   E KF+N +LD +++ 
Sbjct: 123 VAHAFFDAREAKFVNGLLDALAKD 146


>gi|108757895|ref|YP_632923.1| transcription antitermination factor NusB [Myxococcus xanthus DK
           1622]
 gi|119390787|sp|Q1D350|NUSB_MYXXD RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|108461775|gb|ABF86960.1| transcription antitermination factor NusB [Myxococcus xanthus DK
           1622]
          Length = 140

 Score =  156 bits (395), Expect = 9e-37,   Method: Composition-based stats.
 Identities = 37/139 (26%), Positives = 67/139 (48%), Gaps = 8/139 (5%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           R   R  A+QALYQ+++   +T E +         A +  +  +      +++ R ++ G
Sbjct: 4   RRTGRERALQALYQLEMATATTAEALE-------SAWSAAEESNKRDPDAVKFARELVEG 56

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
           V   +  ID LI    +  W   R+  I  ++LR G+ EL     +P +V I+E V +  
Sbjct: 57  VQSHRDEIDQLIERH-SHNWRLDRMSRIDRNVLRLGIFELKYRPDIPRKVSINEAVELGK 115

Query: 136 DFFYGDEPKFINAVLDKVS 154
           +F   +   F+N +LD+V+
Sbjct: 116 NFGNEESSAFVNGLLDRVA 134


>gi|300715571|ref|YP_003740374.1| N utilization substance protein B [Erwinia billingiae Eb661]
 gi|299061407|emb|CAX58517.1| N utilization substance protein B [Erwinia billingiae Eb661]
          Length = 139

 Score =  156 bits (395), Expect = 9e-37,   Method: Composition-based stats.
 Identities = 37/134 (27%), Positives = 62/134 (46%), Gaps = 13/134 (9%)

Query: 21  LAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRK 80
             AVQALY   +     +++  ++             E     VD+ +FR ++ GV    
Sbjct: 11  ECAVQALYSWQLSKNDISDVEYQFLA-----------EQDVKDVDISYFRELLVGVATNS 59

Query: 81  QHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYG 140
            ++D L+   L+ +     L  +  +ILR  + EL +   VP +V I+E + +A  F   
Sbjct: 60  AYLDGLMKPYLSRQ--LEELGQVEKAILRISLFELSKRADVPYKVAINEGIELAKVFGAE 117

Query: 141 DEPKFINAVLDKVS 154
           D  KF+N VLDK +
Sbjct: 118 DSHKFVNGVLDKAA 131


>gi|89067938|ref|ZP_01155382.1| transcription antitermination factor NusB [Oceanicola granulosus
           HTCC2516]
 gi|89046536|gb|EAR52592.1| transcription antitermination factor NusB [Oceanicola granulosus
           HTCC2516]
          Length = 156

 Score =  156 bits (395), Expect = 9e-37,   Method: Composition-based stats.
 Identities = 57/161 (35%), Positives = 85/161 (52%), Gaps = 8/161 (4%)

Query: 1   MTIQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESV 60
           MT     +  K+   R  +RL AVQAL+Q++    S   +++E+E +RF A  E   E  
Sbjct: 1   MTTISGNQRRKM---RSASRLYAVQALFQMEAAQQSVDRVMAEFEDHRFGASYE---EGE 54

Query: 61  YLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHS 120
               DLE FR +    +D +  ID +    L  KW  +R+D  L ++ RA   E I    
Sbjct: 55  MAEGDLETFRALCETAVDNQAKIDQMTDRALVAKWPIARIDPTLRALFRAAGAEFI-RRD 113

Query: 121 VPVEVIISEYVCIAHDFF-YGDEPKFINAVLDKVSRKEEIK 160
            P +V+I+E+V IA  FF  G EP F+NAVLD ++R+   +
Sbjct: 114 TPPKVVITEFVDIARAFFPEGREPSFVNAVLDHMAREARPE 154


>gi|226942829|ref|YP_002797902.1| transcription antitermination protein NusB [Azotobacter vinelandii
           DJ]
 gi|226717756|gb|ACO76927.1| transcription antitermination factor NusB [Azotobacter vinelandii
           DJ]
          Length = 131

 Score =  156 bits (395), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 41/136 (30%), Positives = 65/136 (47%), Gaps = 13/136 (9%)

Query: 24  VQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHI 83
           +QALYQ  + G    EI +++            V++ +  VD  +F  I+HGV  +K  I
Sbjct: 1   MQALYQWHVAGQPLNEIEAQFR-----------VDNDFSTVDGAYFHEILHGVPRQKTEI 49

Query: 84  DLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEP 143
           D   +  L      + +D +  +ILR    EL     VP  V+I+E + +A  F   D  
Sbjct: 50  DEAFAPLLDR--PLAEVDPVELAILRLSTYELSNRLDVPYRVVINEGIELAKVFGATDGH 107

Query: 144 KFINAVLDKVSRKEEI 159
           KF+N VLDK++ +   
Sbjct: 108 KFVNGVLDKLAPRLRA 123


>gi|266618676|pdb|3IMQ|A Chain A, Crystal Structure Of The Nusb101-S10(Delta Loop) Complex
 gi|266618678|pdb|3IMQ|B Chain B, Crystal Structure Of The Nusb101-S10(Delta Loop) Complex
 gi|266618680|pdb|3IMQ|C Chain C, Crystal Structure Of The Nusb101-S10(Delta Loop) Complex
          Length = 141

 Score =  156 bits (395), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 35/134 (26%), Positives = 60/134 (44%), Gaps = 13/134 (9%)

Query: 21  LAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRK 80
             AVQALY   +      ++  ++             E     VD+ +FR ++ GV    
Sbjct: 13  ECAVQALYSWQLSQNDIADVEYQFLA-----------EQDVKDVDVLYFRELLAGVATNT 61

Query: 81  QHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYG 140
            ++D L+   L+       L  +  ++LR  + EL +   VP +V I+E + +A  F   
Sbjct: 62  AYLDGLMKPYLSR--LLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAE 119

Query: 141 DEPKFINAVLDKVS 154
           +  KF+N VLDK +
Sbjct: 120 NSHKFVNGVLDKAA 133


>gi|260893142|ref|YP_003239239.1| NusB antitermination factor [Ammonifex degensii KC4]
 gi|260865283|gb|ACX52389.1| NusB antitermination factor [Ammonifex degensii KC4]
          Length = 155

 Score =  156 bits (395), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 34/155 (21%), Positives = 69/155 (44%), Gaps = 12/155 (7%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           R  AR AA+  L+Q+D+ G    E +          +              E+   ++ G
Sbjct: 3   RRRAREAALMVLFQVDVGGAVPEEALERTLAEWRLGN-----------ASREFATSLVLG 51

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
            +  +  ID +I   L+++W   R++ +  +++R  + EL+    +P  V I+E V +A 
Sbjct: 52  TLAYRPQIDRVIEE-LSQRWRLERMNRVDRNVMRLALYELLFRQDIPPAVAINEAVELAK 110

Query: 136 DFFYGDEPKFINAVLDKVSRKEEIKRSGCVSAITQ 170
            +   + P+F+N +L KV+    + R   +    +
Sbjct: 111 RYGGEESPRFVNGILGKVAENLSLYREKVIDPTAE 145


>gi|313901605|ref|ZP_07835044.1| NusB antitermination factor [Thermaerobacter subterraneus DSM
           13965]
 gi|313468135|gb|EFR63610.1| NusB antitermination factor [Thermaerobacter subterraneus DSM
           13965]
          Length = 214

 Score =  156 bits (394), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 38/143 (26%), Positives = 61/143 (42%), Gaps = 14/143 (9%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           R   R  A+Q L+Q +  G    E   ++    +    E+          L +   +  G
Sbjct: 13  RRRGREIALQVLFQWEAAGHPL-EAGLQWAAGEYNPGEEV----------LAFAADLAGG 61

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIE--CHSVPVEVIISEYVCI 133
           V   +  ID LI+      W   RL  +  +ILR G+ EL+      VP  V I+E V +
Sbjct: 62  VTRHRLDIDGLIARY-ARDWDLERLARVDRNILRLGIYELLYAGRPDVPPPVAINEAVEL 120

Query: 134 AHDFFYGDEPKFINAVLDKVSRK 156
           A  +   D  +FIN +L +++R 
Sbjct: 121 AKRYSSEDAARFINGILGQLARD 143


>gi|261417744|ref|YP_003251426.1| transcription antitermination protein NusB [Geobacillus sp.
           Y412MC61]
 gi|319767444|ref|YP_004132945.1| NusB antitermination factor [Geobacillus sp. Y412MC52]
 gi|261374201|gb|ACX76944.1| NusB antitermination factor [Geobacillus sp. Y412MC61]
 gi|317112310|gb|ADU94802.1| NusB antitermination factor [Geobacillus sp. Y412MC52]
          Length = 130

 Score =  156 bits (394), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 41/139 (29%), Positives = 66/139 (47%), Gaps = 16/139 (11%)

Query: 15  RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74
           +R  AR  A+QAL+QID+      E +     +      ++D           + R ++ 
Sbjct: 2   KRHEAREKALQALFQIDVGRIPPDEAL-----HNVTGGGDID----------PFLRQLVF 46

Query: 75  GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134
           GV++ ++ ID L+ + L EKW+  R+  +  +ILR    E+     VPV V + E V +A
Sbjct: 47  GVVEHQEEIDELLRANL-EKWTLERVANVDRAILRMATYEMKYADDVPVSVSLDEAVELA 105

Query: 135 HDFFYGDEPKFINAVLDKV 153
             F       F+N VL KV
Sbjct: 106 KTFGDWKSGSFVNGVLSKV 124


>gi|194016988|ref|ZP_03055601.1| transcription antitermination factor NusB [Bacillus pumilus ATCC
           7061]
 gi|194011594|gb|EDW21163.1| transcription antitermination factor NusB [Bacillus pumilus ATCC
           7061]
          Length = 131

 Score =  156 bits (394), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 39/148 (26%), Positives = 68/148 (45%), Gaps = 18/148 (12%)

Query: 15  RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74
           +R  AR  A+Q L+QID+      E I+     +                   +F  ++ 
Sbjct: 2   KRRTAREKALQTLFQIDVSNIDPKEAITHALDEQESD---------------PFFEELVF 46

Query: 75  GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134
           GV+++K  +D +IS  L   W   R+  +  +ILR  V E++    +PV V ++E + +A
Sbjct: 47  GVLEQKDKLDDMISQHLV-NWKLDRIANVDRAILRLSVYEMVYQEDIPVSVSMNEAIELA 105

Query: 135 HDFFYGDEPKFINAVLDKVSRKEEIKRS 162
             F      KF+N VL  +  K ++K+ 
Sbjct: 106 KLFGDDKASKFVNGVLSNI--KNDLKQQ 131


>gi|160872402|ref|ZP_02062534.1| transcription antitermination factor NusB [Rickettsiella grylli]
 gi|159121201|gb|EDP46539.1| transcription antitermination factor NusB [Rickettsiella grylli]
          Length = 148

 Score =  155 bits (393), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 41/159 (25%), Positives = 77/159 (48%), Gaps = 16/159 (10%)

Query: 1   MTIQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESV 60
           MT +  K + K   R   AR  AVQA+YQ  +   + + I +++             +  
Sbjct: 1   MTQKSKKNNFKAKQR---ARRFAVQAIYQWQLTQETFSVIQTKFLA-----------QEE 46

Query: 61  YLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHS 120
              VD  +F +I+ G+++  + +D  + S +       +LD +  +ILR G  EL+ C  
Sbjct: 47  MKSVDTAYFTLIVQGILNDHELLDRYLQSFVDR--PLCQLDCVEWAILRLGTYELLNCSE 104

Query: 121 VPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEI 159
           +P +VI++E + +A  F   D  K++N +L +++ K   
Sbjct: 105 IPYKVILNEAIELAKMFGATDSYKYVNGILHRIAEKNRA 143


>gi|94500355|ref|ZP_01306887.1| transcription antitermination protein NusB [Oceanobacter sp. RED65]
 gi|94427390|gb|EAT12368.1| transcription antitermination protein NusB [Oceanobacter sp. RED65]
          Length = 128

 Score =  155 bits (393), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 42/136 (30%), Positives = 68/136 (50%), Gaps = 13/136 (9%)

Query: 24  VQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHI 83
           +QALYQ D+ G S + I +E+ T           ++    VD E+FR I+ GV      +
Sbjct: 1   MQALYQWDLAGASLSNIEAEFLT-----------DNDMSKVDTEYFRDILRGVPRELDDL 49

Query: 84  DLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEP 143
           D  ++ CL+       +  +  +ILR G  EL+    VP  V+I+E V ++  F   +  
Sbjct: 50  DEKLAPCLSRN--MQEVTPVERAILRLGAYELLHRIDVPYRVVINESVELSKKFGANESH 107

Query: 144 KFINAVLDKVSRKEEI 159
           KFIN  LDK+++   +
Sbjct: 108 KFINGALDKLAQAVRV 123


>gi|302541095|ref|ZP_07293437.1| transcription antitermination factor NusB [Streptomyces
           hygroscopicus ATCC 53653]
 gi|302458713|gb|EFL21806.1| transcription antitermination factor NusB [Streptomyces
           himastatinicus ATCC 53653]
          Length = 152

 Score =  155 bits (393), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 36/138 (26%), Positives = 66/138 (47%), Gaps = 9/138 (6%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           R  AR  A Q L++ D  G S   +++++  +    D +  V         E+   ++ G
Sbjct: 4   RNKARKRAFQILFEADQRGSSVQTVLADWIRHARTDDRQPPVS--------EYTMQLVEG 55

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
             +    ID L+++     W+  R+ ++  +ILR G  EL+   + P  V+I E V +A 
Sbjct: 56  YAEHTARIDELLATYAV-GWTLDRMPVVDRNILRLGAYELVWEDATPDAVVIDEAVQLAK 114

Query: 136 DFFYGDEPKFINAVLDKV 153
           +F   D P F+N +L ++
Sbjct: 115 EFSTDDSPSFVNGLLGRL 132


>gi|291613126|ref|YP_003523283.1| NusB antitermination factor [Sideroxydans lithotrophicus ES-1]
 gi|291583238|gb|ADE10896.1| NusB antitermination factor [Sideroxydans lithotrophicus ES-1]
          Length = 150

 Score =  155 bits (393), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 41/157 (26%), Positives = 65/157 (41%), Gaps = 13/157 (8%)

Query: 3   IQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYL 62
           + D K        R  AR  A+Q +Y+  + G +   I           +     E    
Sbjct: 1   MSDAKHSNPAKSMRHRARELAMQGVYEWRLSGKNAKLI-----------ENGTRDEKSLG 49

Query: 63  HVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVP 122
             D E+F  +++G +   + +   I+  L  K     L  +  S+L  G  ELI    VP
Sbjct: 50  RYDTEFFGQLLNGAIAHHEALSAQIAPHLDRK--LDELSPVEYSVLLLGAYELIHHPEVP 107

Query: 123 VEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEI 159
             V+I+E V +A  F   D  KF+N VLDK++ +   
Sbjct: 108 YRVVINEAVELAKTFGGSDGHKFVNGVLDKLAAEVRA 144


>gi|91203372|emb|CAJ71025.1| unknown protein [Candidatus Kuenenia stuttgartiensis]
          Length = 422

 Score =  155 bits (393), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 42/140 (30%), Positives = 67/140 (47%), Gaps = 12/140 (8%)

Query: 14  HRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVII 73
             R IAR  A++ALYQ+D++G      I E+             ++       ++  +++
Sbjct: 2   RNRTIARELAIKALYQLDLLGDKAETEIDEFCR-----------QNAEKPDIYKFALLLV 50

Query: 74  HGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCI 133
            G     + ID  IS    E W   R+ +I  +ILR GV EL+    +P +V I+E + +
Sbjct: 51  TGCRSHVKEIDERIS-LSAENWDLHRMAVIDKNILRLGVYELLYRDDIPPKVSINEAIEL 109

Query: 134 AHDFFYGDEPKFINAVLDKV 153
           A  F   D   F+N +LDKV
Sbjct: 110 AKKFGDKDSGMFVNGILDKV 129


>gi|171059618|ref|YP_001791967.1| NusB antitermination factor [Leptothrix cholodnii SP-6]
 gi|170777063|gb|ACB35202.1| NusB antitermination factor [Leptothrix cholodnii SP-6]
          Length = 171

 Score =  155 bits (393), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 33/145 (22%), Positives = 60/145 (41%), Gaps = 13/145 (8%)

Query: 10  LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF 69
            +    R  +R  A+Q LY+  +    +  + +            +  +  +   D   F
Sbjct: 24  PRPKSARRRSRELALQGLYEWQVGQADSHVVEA-----------HMREQEDHAKCDTAHF 72

Query: 70  RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISE 129
             ++HG + +   +D +++  L        L  +   +L  G  EL  C  VP +V I+E
Sbjct: 73  SALLHGCIAQVAALDAVLTPHLDR--RVQELSPVEHGVLLIGAYELQHCLDVPYKVAINE 130

Query: 130 YVCIAHDFFYGDEPKFINAVLDKVS 154
            V +A  F   D  K++N VLDK +
Sbjct: 131 AVELAKSFGGTDGHKYVNGVLDKAA 155


>gi|56420932|ref|YP_148250.1| transcription antitermination protein NusB [Geobacillus
           kaustophilus HTA426]
 gi|297529436|ref|YP_003670711.1| NusB antitermination factor [Geobacillus sp. C56-T3]
 gi|81557844|sp|Q5KXA4|NUSB_GEOKA RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|56380774|dbj|BAD76682.1| transcription termination factor [Geobacillus kaustophilus HTA426]
 gi|297252688|gb|ADI26134.1| NusB antitermination factor [Geobacillus sp. C56-T3]
          Length = 130

 Score =  155 bits (393), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 41/139 (29%), Positives = 66/139 (47%), Gaps = 16/139 (11%)

Query: 15  RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74
           +R  AR  A+QAL+QID+      E +     +      ++D           + R ++ 
Sbjct: 2   KRHEAREKALQALFQIDVGRIPPDEAL-----HNVTGGGDID----------PFLRQLVF 46

Query: 75  GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134
           GV++ ++ ID L+ + L EKW+  R+  +  +ILR    E+     VPV V + E V +A
Sbjct: 47  GVVEHQEEIDELLRANL-EKWTLERVANVDRAILRMATYEMKYADDVPVSVSLDEAVELA 105

Query: 135 HDFFYGDEPKFINAVLDKV 153
             F       F+N VL KV
Sbjct: 106 KKFGDWKSGSFVNGVLSKV 124


>gi|239827671|ref|YP_002950295.1| transcription antitermination protein NusB [Geobacillus sp. WCH70]
 gi|239807964|gb|ACS25029.1| NusB antitermination factor [Geobacillus sp. WCH70]
          Length = 133

 Score =  155 bits (392), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 42/147 (28%), Positives = 68/147 (46%), Gaps = 16/147 (10%)

Query: 15  RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74
           +R  AR  A+QAL+Q+D+      E +            E+D           + R ++ 
Sbjct: 3   KRHEAREKALQALFQVDVGHIPPEEALQ-----NVTGGKEVD----------PFLRQLVI 47

Query: 75  GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134
           GV + ++ ID L+ + L EKW+  R+  +  +ILR    E+     VPV+V + E V +A
Sbjct: 48  GVTEHQEEIDALLRANL-EKWTLERVANVDRAILRMATYEMKYVDDVPVKVSLDEAVELA 106

Query: 135 HDFFYGDEPKFINAVLDKVSRKEEIKR 161
             F      +F+N VL KV     I+ 
Sbjct: 107 KKFGDTKSGRFVNGVLSKVKDALHIQE 133


>gi|110679100|ref|YP_682107.1| N utilization substance protein B-like protein, putative
           [Roseobacter denitrificans OCh 114]
 gi|109455216|gb|ABG31421.1| N utilization substance protein B-like protein, putative
           [Roseobacter denitrificans OCh 114]
          Length = 145

 Score =  155 bits (392), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 48/144 (33%), Positives = 74/144 (51%), Gaps = 5/144 (3%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           +  ARL AVQAL+Q++  G +   +  E+  +RF    +       L  D++ F  +I G
Sbjct: 2   KSAARLYAVQALFQMEHSGQTIEAVRREFLDHRFGETYDGQE---MLDGDVDLFGAVIEG 58

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
            ++ +  ID +    L  KW   R+D  L ++ RA   EL      P +V+ISEYV +A 
Sbjct: 59  AVNYQAPIDQMTDRALVAKWPLGRIDPTLRALFRAAGAEL-NGKDTPPKVVISEYVDVAR 117

Query: 136 DFFYG-DEPKFINAVLDKVSRKEE 158
            FF    EPK +N VLD ++R+  
Sbjct: 118 AFFEDGKEPKLVNGVLDHMAREAR 141


>gi|332297436|ref|YP_004439358.1| NusB antitermination factor [Treponema brennaborense DSM 12168]
 gi|332180539|gb|AEE16227.1| NusB antitermination factor [Treponema brennaborense DSM 12168]
          Length = 138

 Score =  155 bits (392), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 44/141 (31%), Positives = 71/141 (50%), Gaps = 8/141 (5%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           R   R+ A QAL+  D+ G S  E+++           E DV +      L + R++I G
Sbjct: 3   RRKGRILAFQALFSWDVGGMSVDELLA-------FPWMEADVLAKTDEGSLSFARLLIAG 55

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
            ++    ID LI + L   W F R++ +  ++LR  V  L+  H +   ++I E + IA 
Sbjct: 56  TIEHIDEIDSLIKAHLD-SWDFERINKVDLAVLRISVYPLLYQHDIHPSIVIDEAIDIAK 114

Query: 136 DFFYGDEPKFINAVLDKVSRK 156
           +F  GD  +FINAVLD + + 
Sbjct: 115 EFGSGDSFRFINAVLDNIRKD 135


>gi|218549924|ref|YP_002383715.1| transcription antitermination protein NusB [Escherichia fergusonii
           ATCC 35469]
 gi|226738904|sp|B7LMH1|NUSB_ESCF3 RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|218357465|emb|CAQ90104.1| transcription antitermination protein [Escherichia fergusonii ATCC
           35469]
 gi|324114635|gb|EGC08603.1| transcription antitermination protein NusB [Escherichia fergusonii
           B253]
 gi|325498301|gb|EGC96160.1| transcription antitermination protein NusB [Escherichia fergusonii
           ECD227]
          Length = 139

 Score =  155 bits (392), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 36/134 (26%), Positives = 61/134 (45%), Gaps = 13/134 (9%)

Query: 21  LAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRK 80
             AVQALY   +      ++  ++   +   D           VD+ +FR ++ GV    
Sbjct: 11  ECAVQALYSWQLSRNDIADVEYQFLAEQDVKD-----------VDVLYFRELLAGVATNT 59

Query: 81  QHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYG 140
            ++D L+   L+       L  +  ++LR  + EL +   VP +V I+E + +A  F   
Sbjct: 60  AYLDGLMKPYLSR--LLEELGQVEKAVLRIALFELSKRSDVPYKVAINEAIELAKTFGAE 117

Query: 141 DEPKFINAVLDKVS 154
           D  KF+N VLDK +
Sbjct: 118 DSHKFVNGVLDKAA 131


>gi|297195528|ref|ZP_06912926.1| transcription antitermination protein NusB [Streptomyces
           pristinaespiralis ATCC 25486]
 gi|297152834|gb|EFH32015.1| transcription antitermination protein NusB [Streptomyces
           pristinaespiralis ATCC 25486]
          Length = 142

 Score =  155 bits (392), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 34/138 (24%), Positives = 64/138 (46%), Gaps = 9/138 (6%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           R  AR  A Q L++ D  G +   +++++  +    + +  V         E+   ++ G
Sbjct: 4   RNKARKRAFQILFEADQRGATVHTVLADWVRHARTDERQPPV--------AEYTMDLVEG 55

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
             +    ID LI++     W+  R+ ++  +ILR G  EL+     P  V+I E V +A 
Sbjct: 56  YAEHADRIDELIATYAV-GWTIDRMPVVDRNILRLGAYELVWKDETPDAVVIDEAVQLAK 114

Query: 136 DFFYGDEPKFINAVLDKV 153
           +F   + P F+N +L + 
Sbjct: 115 EFSTDESPAFVNGLLGRF 132


>gi|152976586|ref|YP_001376103.1| transcription antitermination protein NusB [Bacillus cereus subsp.
           cytotoxis NVH 391-98]
 gi|189035878|sp|A7GSK0|NUSB_BACCN RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|152025338|gb|ABS23108.1| NusB antitermination factor [Bacillus cytotoxicus NVH 391-98]
          Length = 130

 Score =  155 bits (392), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 42/139 (30%), Positives = 64/139 (46%), Gaps = 14/139 (10%)

Query: 15  RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74
           +R  AR  A+QALYQ+DI G    ++  E          E             +   ++ 
Sbjct: 2   KRRTARERAMQALYQMDITGELNPKVAVENTLDEGEETNE-------------FLDSLVG 48

Query: 75  GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134
           G ++ K+ ID LI   L +KW   R+ ++  SILR  V E+     +P  V I+E + IA
Sbjct: 49  GFVEHKETIDELIRQNL-KKWKLERISIVDRSILRLAVYEMKYMEEIPHNVTINEAIEIA 107

Query: 135 HDFFYGDEPKFINAVLDKV 153
             F   +  +FIN VL  +
Sbjct: 108 KTFGDEESRRFINGVLSNI 126


>gi|209964638|ref|YP_002297553.1| transcription antitermination protein NusB, putative
           [Rhodospirillum centenum SW]
 gi|209958104|gb|ACI98740.1| transcription antitermination protein NusB, putative
           [Rhodospirillum centenum SW]
          Length = 179

 Score =  154 bits (391), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 48/138 (34%), Positives = 79/138 (57%), Gaps = 3/138 (2%)

Query: 24  VQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHI 83
           VQALYQI++ G  +   I E+  +R   + + D    Y+  D + F  I+ GVM R+  +
Sbjct: 37  VQALYQIELGGTPSETAIGEFVRHRLGQEIDGD---RYVSADPQLFADIVRGVMARQADV 93

Query: 84  DLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEP 143
           D L++  L  +W   R++ IL +ILRAG  EL+    V   ++I++Y+ + H FF G EP
Sbjct: 94  DQLVTGVLDRQWGLDRMEPILRAILRAGAWELLGNTGVAPHIVINDYIDVGHAFFAGREP 153

Query: 144 KFINAVLDKVSRKEEIKR 161
             +N VLD+++R+   + 
Sbjct: 154 GMVNGVLDRIARQLRPEE 171


>gi|90415724|ref|ZP_01223658.1| transcription antitermination protein NusB [marine gamma
           proteobacterium HTCC2207]
 gi|90333047|gb|EAS48217.1| transcription antitermination protein NusB [marine gamma
           proteobacterium HTCC2207]
          Length = 146

 Score =  154 bits (391), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 43/145 (29%), Positives = 64/145 (44%), Gaps = 13/145 (8%)

Query: 10  LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF 69
           +     R  AR   VQALY  D+      +I +E+            V++    VD E F
Sbjct: 1   MSKPKMRQKARRLLVQALYSWDMGKTDLIDIEAEFH-----------VDNNMATVDTELF 49

Query: 70  RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISE 129
             I+ GV      ID      L       +LD +  +ILR    E++    VP +V+I+E
Sbjct: 50  HEILFGVPKHMTEIDAAYEPYLDR--DQDQLDPVSQAILRLSTYEMLHRIDVPYKVVINE 107

Query: 130 YVCIAHDFFYGDEPKFINAVLDKVS 154
            V +A  F   D  K+IN +LD+V+
Sbjct: 108 GVNLAKTFGPTDAFKYINGILDRVA 132


>gi|270157438|ref|ZP_06186095.1| transcription antitermination factor NusB [Legionella longbeachae
           D-4968]
 gi|289164170|ref|YP_003454308.1| N utilization substance protein B homolog [Legionella longbeachae
           NSW150]
 gi|269989463|gb|EEZ95717.1| transcription antitermination factor NusB [Legionella longbeachae
           D-4968]
 gi|288857343|emb|CBJ11171.1| putative N utilization substance protein B homolog [Legionella
           longbeachae NSW150]
          Length = 147

 Score =  154 bits (391), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 38/141 (26%), Positives = 73/141 (51%), Gaps = 13/141 (9%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           +  AR  A+QALYQ  + G    EI +++            V +    VD+++F  ++HG
Sbjct: 9   KRKARKLALQALYQWLMAGTEVCEIEAQFR-----------VINKMDKVDVDYFCRLLHG 57

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
           V +    ++  I+  L  +   S L+ I  ++LR G  EL+ C  +P +V++ E + +  
Sbjct: 58  VPEHVASLETSITPFLDRE--ISALNPIELTVLRLGSFELLYCPEIPYKVVLDEAISLTK 115

Query: 136 DFFYGDEPKFINAVLDKVSRK 156
           +F   D  +++N VL+ ++R+
Sbjct: 116 EFGSQDGYRYVNGVLNNLARQ 136


>gi|108799326|ref|YP_639523.1| transcription antitermination protein NusB [Mycobacterium sp. MCS]
 gi|119868442|ref|YP_938394.1| transcription antitermination protein NusB [Mycobacterium sp. KMS]
 gi|126434984|ref|YP_001070675.1| transcription antitermination protein NusB [Mycobacterium sp. JLS]
 gi|119390786|sp|Q1B9G7|NUSB_MYCSS RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|166215699|sp|A3PZ57|NUSB_MYCSJ RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|166215700|sp|A1UFJ6|NUSB_MYCSK RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|108769745|gb|ABG08467.1| NusB antitermination factor [Mycobacterium sp. MCS]
 gi|119694531|gb|ABL91604.1| NusB antitermination factor [Mycobacterium sp. KMS]
 gi|126234784|gb|ABN98184.1| NusB antitermination factor [Mycobacterium sp. JLS]
          Length = 162

 Score =  154 bits (391), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 45/145 (31%), Positives = 69/145 (47%), Gaps = 9/145 (6%)

Query: 9   DLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEW 68
           D +    R  AR  AV  L++ +  G +  E+ +   +    A T+ DV ++       +
Sbjct: 3   DRRPDRGRHQARKRAVDLLFEAEARGLTAAEVAT---SRNKLAGTQPDVTALN-----PY 54

Query: 69  FRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIIS 128
              +  GV D + HID LIS+ L + W+  RL  +  +ILR  V EL+    VP  V + 
Sbjct: 55  TVTVARGVTDHRDHIDDLISAHL-QGWTLDRLPAVDRAILRVAVWELLHAEDVPEPVAVD 113

Query: 129 EYVCIAHDFFYGDEPKFINAVLDKV 153
           E V +A      D P F+N VL +V
Sbjct: 114 EAVELAKQLSTDDSPGFVNGVLGQV 138


>gi|294501203|ref|YP_003564903.1| transcription antitermination factor NusB [Bacillus megaterium QM
           B1551]
 gi|295706550|ref|YP_003599625.1| transcription antitermination factor NusB [Bacillus megaterium DSM
           319]
 gi|294351140|gb|ADE71469.1| transcription antitermination factor NusB [Bacillus megaterium QM
           B1551]
 gi|294804209|gb|ADF41275.1| transcription antitermination factor NusB [Bacillus megaterium DSM
           319]
          Length = 130

 Score =  154 bits (391), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 41/139 (29%), Positives = 63/139 (45%), Gaps = 16/139 (11%)

Query: 15  RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74
           +R  AR  A+QAL+Q D+      E I                  V      ++   ++ 
Sbjct: 2   KRHTARQKALQALFQHDLGQTEPMEAI---------------GNVVQNEKSDQFLESLVL 46

Query: 75  GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134
           GV++ +Q ID L+ + L EKW+  R+  +   ILR  V E+     +P  V ++E + +A
Sbjct: 47  GVVEHQQEIDELLRNHL-EKWTLDRVATVDRVILRIAVYEMKYEEEIPTSVTLNEAIELA 105

Query: 135 HDFFYGDEPKFINAVLDKV 153
             F      KFIN VL KV
Sbjct: 106 KTFGDDQSSKFINGVLSKV 124


>gi|84502770|ref|ZP_01000889.1| transcription antitermination factor NusB [Oceanicola batsensis
           HTCC2597]
 gi|84389165|gb|EAQ01963.1| transcription antitermination factor NusB [Oceanicola batsensis
           HTCC2597]
          Length = 166

 Score =  154 bits (390), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 55/156 (35%), Positives = 87/156 (55%), Gaps = 8/156 (5%)

Query: 9   DLKLSHRR---GIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVD 65
            L  + RR     +RL AVQAL+Q++ IG +   +I+E+E +RF A  E D        D
Sbjct: 13  PLSGNQRRKMKSASRLYAVQALFQMEAIGQTVERVIAEFEDHRFGAVYEGDE---MAEGD 69

Query: 66  LEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEV 125
           ++ FR  +   ++ +  ID +    L  KW  +R+D  L ++ RA   EL++    P +V
Sbjct: 70  IDLFRATMADAVNYQARIDQMTDRALVAKWPIARIDPTLRALFRAAGAELVQS-DTPPKV 128

Query: 126 IISEYVCIAHDFF-YGDEPKFINAVLDKVSRKEEIK 160
           +I EYV +A  FF  G EP+F+NAVLD ++R+   +
Sbjct: 129 VIKEYVDVASAFFPEGREPRFVNAVLDHMAREARPE 164


>gi|86159160|ref|YP_465945.1| NusB antitermination factor [Anaeromyxobacter dehalogenans 2CP-C]
 gi|197123232|ref|YP_002135183.1| NusB antitermination factor [Anaeromyxobacter sp. K]
 gi|220918021|ref|YP_002493325.1| NusB antitermination factor [Anaeromyxobacter dehalogenans 2CP-1]
 gi|119372275|sp|Q2ILH8|NUSB_ANADE RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|238689890|sp|B4UIM1|NUSB_ANASK RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|254772609|sp|B8JEW3|NUSB_ANAD2 RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|85775671|gb|ABC82508.1| NusB antitermination factor [Anaeromyxobacter dehalogenans 2CP-C]
 gi|196173081|gb|ACG74054.1| NusB antitermination factor [Anaeromyxobacter sp. K]
 gi|219955875|gb|ACL66259.1| NusB antitermination factor [Anaeromyxobacter dehalogenans 2CP-1]
          Length = 142

 Score =  154 bits (390), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 40/153 (26%), Positives = 71/153 (46%), Gaps = 12/153 (7%)

Query: 12  LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71
           ++ RR  AR  A+QALYQID+      + +S +       + E+          ++    
Sbjct: 1   MTSRRTRARERALQALYQIDVAAEGIDDALSRFWKSFEPVEREV----------MDLAEG 50

Query: 72  IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
           ++ GV   ++ +D  I   ++  W   R+  +  ++LR  V EL+    VPV+V+I+E +
Sbjct: 51  LVRGVAQHRRAVDEAI-EAVSTNWRLDRMAKVDRNVLRLAVFELL-RTDVPVKVVINEAI 108

Query: 132 CIAHDFFYGDEPKFINAVLDKVSRKEEIKRSGC 164
            +   +       F+N VLDKV+      R G 
Sbjct: 109 ELGKKYGSESSGAFVNGVLDKVASGLPPARRGE 141


>gi|307326792|ref|ZP_07605984.1| NusB antitermination factor [Streptomyces violaceusniger Tu 4113]
 gi|306887555|gb|EFN18549.1| NusB antitermination factor [Streptomyces violaceusniger Tu 4113]
          Length = 150

 Score =  154 bits (389), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 36/138 (26%), Positives = 63/138 (45%), Gaps = 9/138 (6%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           R  AR  A Q L++ D  G +   +++++       D +  V         E+   ++ G
Sbjct: 4   RNKARKRAFQILFEADQRGATVQIVLADWIRLARTDDRQPPVS--------EYTMQLVEG 55

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
                  ID LI++     W+  R+ ++  +ILR G  EL+     P  V+I E V +A 
Sbjct: 56  YAQHIDRIDELIATYAV-GWTLDRMPVVDRNILRLGAYELVWEDETPDAVVIDEAVQLAK 114

Query: 136 DFFYGDEPKFINAVLDKV 153
           +F   D P F+N +L ++
Sbjct: 115 EFSTDDSPAFVNGLLGRI 132


>gi|308371048|ref|ZP_07667079.1| putative transcription antitermination factor NusB [Mycobacterium
           tuberculosis SUMu003]
 gi|308373441|ref|ZP_07667582.1| putative transcription antitermination factor NusB [Mycobacterium
           tuberculosis SUMu005]
 gi|308377044|ref|ZP_07668414.1| putative transcription antitermination factor NusB [Mycobacterium
           tuberculosis SUMu008]
 gi|308378420|ref|ZP_07668745.1| putative transcription antitermination factor NusB [Mycobacterium
           tuberculosis SUMu009]
 gi|308405376|ref|ZP_07669465.1| putative transcription antitermination factor NusB [Mycobacterium
           tuberculosis SUMu012]
 gi|308330008|gb|EFP18859.1| putative transcription antitermination factor NusB [Mycobacterium
           tuberculosis SUMu003]
 gi|308337652|gb|EFP26503.1| putative transcription antitermination factor NusB [Mycobacterium
           tuberculosis SUMu005]
 gi|308349124|gb|EFP37975.1| putative transcription antitermination factor NusB [Mycobacterium
           tuberculosis SUMu008]
 gi|308352601|gb|EFP41452.1| putative transcription antitermination factor NusB [Mycobacterium
           tuberculosis SUMu009]
 gi|308365233|gb|EFP54084.1| putative transcription antitermination factor NusB [Mycobacterium
           tuberculosis SUMu012]
          Length = 249

 Score =  154 bits (389), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 44/145 (30%), Positives = 70/145 (48%), Gaps = 9/145 (6%)

Query: 9   DLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEW 68
           D K    R  AR  AV  L++ ++ G S  E++    T    A+ + D+  ++      +
Sbjct: 3   DRKPVRGRHQARKRAVALLFEAEVRGISAAEVVD---TRAALAEAKPDIARLH-----PY 54

Query: 69  FRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIIS 128
              +  GV +   HID LI++ L   W+  RL  +  +ILR  V EL+    VP  V++ 
Sbjct: 55  TAAVARGVSEHAAHIDDLITAHL-RGWTLDRLPAVDRAILRVSVWELLHAADVPEPVVVD 113

Query: 129 EYVCIAHDFFYGDEPKFINAVLDKV 153
           E V +A +    D P F+N VL +V
Sbjct: 114 EAVQLAKELSTDDSPGFVNGVLGQV 138


>gi|15639999|ref|NP_219452.1| transcription antitermination protein NusB [Treponema pallidum
           subsp. pallidum str. Nichols]
 gi|189026238|ref|YP_001934010.1| transcription antitermination protein NusB [Treponema pallidum
           subsp. pallidum SS14]
 gi|7387973|sp|O83979|NUSB_TREPA RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|238689355|sp|B2S4Q2|NUSB_TREPS RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|3323342|gb|AAC65965.1| N utilization substance protein B (nusB) [Treponema pallidum subsp.
           pallidum str. Nichols]
 gi|189018813|gb|ACD71431.1| N utilization substance protein B [Treponema pallidum subsp.
           pallidum SS14]
 gi|291060372|gb|ADD73107.1| transcription antitermination factor NusB [Treponema pallidum
           subsp. pallidum str. Chicago]
          Length = 141

 Score =  154 bits (389), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 44/140 (31%), Positives = 69/140 (49%), Gaps = 10/140 (7%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           R  AR+ A QAL+  D  G +  E ++++   R                DL + R++  G
Sbjct: 10  RRRARILAFQALFAWDAAGITP-ETLTQFTWLRR--------NPPPSTQDLGFSRLLFLG 60

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
            ++  + ID  +SS L E W F RL+ +  +ILR     L+    +P  V+I E V IA 
Sbjct: 61  TLEHLREIDGCVSSRL-EHWDFVRLNKVDKAILRLSAYSLLFQKDIPPVVVIHEAVSIAR 119

Query: 136 DFFYGDEPKFINAVLDKVSR 155
           DF   D  +F+N VLD +++
Sbjct: 120 DFGTDDSFRFVNGVLDNIAK 139


>gi|221135088|ref|ZP_03561391.1| transcription antitermination protein NusB [Glaciecola sp.
           HTCC2999]
          Length = 145

 Score =  154 bits (389), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 39/150 (26%), Positives = 68/150 (45%), Gaps = 14/150 (9%)

Query: 6   NKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVD 65
           ++  +K + RR  AR  A+Q +Y   + G +   +           +  L   +    +D
Sbjct: 2   SEAKMKPAARR-KARELALQGIYSWQMNGNTIESV-----------ELHLATTNDMSKID 49

Query: 66  LEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEV 125
           L +F+ ++     +   +D+ I   L        LD I  +ILR   LEL +   VP +V
Sbjct: 50  LAFFQELLRDTAKKVVELDVAIKPYLGR--LPEELDPIEKAILRLATLELTQRIDVPYKV 107

Query: 126 IISEYVCIAHDFFYGDEPKFINAVLDKVSR 155
           +I+E + +A  F   +  KF+N VLDK  +
Sbjct: 108 VINEAIELAKSFGAEESHKFVNGVLDKAVK 137


>gi|254488295|ref|ZP_05101500.1| transcription antitermination factor NusB [Roseobacter sp. GAI101]
 gi|214045164|gb|EEB85802.1| transcription antitermination factor NusB [Roseobacter sp. GAI101]
          Length = 159

 Score =  154 bits (389), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 50/161 (31%), Positives = 84/161 (52%), Gaps = 5/161 (3%)

Query: 1   MTIQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESV 60
           MT        +    +  +RL AVQAL+Q++    S   + +E+  +RF A  +    + 
Sbjct: 1   MTSTAGLSGNQKRKMKSASRLYAVQALFQMEHSSQSFDTVRTEFLEHRFGATYDG---AE 57

Query: 61  YLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHS 120
            +  D+  F  ++   ++ +  ID +    L  KW  +R+D  L ++ RA   EL +   
Sbjct: 58  MIDGDIRHFADVLETAVNYQAAIDQMTDRALVAKWPIARIDPTLRALFRAAGAELRDTG- 116

Query: 121 VPVEVIISEYVCIAHDFFYG-DEPKFINAVLDKVSRKEEIK 160
            P +V+I+EYV +A  FF G DEPKF+NAVLD ++R+   +
Sbjct: 117 TPPKVVITEYVDVARAFFEGSDEPKFVNAVLDHMAREARPE 157


>gi|89099252|ref|ZP_01172130.1| transcription antitermination protein NusB [Bacillus sp. NRRL
           B-14911]
 gi|89086098|gb|EAR65221.1| transcription antitermination protein NusB [Bacillus sp. NRRL
           B-14911]
          Length = 130

 Score =  153 bits (388), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 47/139 (33%), Positives = 66/139 (47%), Gaps = 16/139 (11%)

Query: 15  RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74
           +R  AR  A+QAL+QID+     +E I                         E+  +++ 
Sbjct: 2   KRRTAREKALQALFQIDVSQADPSEAIDHVLEGEEGD---------------EYLTLVVT 46

Query: 75  GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134
           GV++ K+ ID LI   L EKW   RL  +  ++LR GV EL     VP  V+I E + IA
Sbjct: 47  GVLENKEEIDSLIKQYL-EKWKLERLATVDRNLLRQGVYELKYSKEVPANVVIDEAIEIA 105

Query: 135 HDFFYGDEPKFINAVLDKV 153
             F   +  +FIN VL KV
Sbjct: 106 KIFGDDNSSRFINGVLSKV 124


>gi|332703471|ref|ZP_08423559.1| NusB antitermination factor [Desulfovibrio africanus str. Walvis
           Bay]
 gi|332553620|gb|EGJ50664.1| NusB antitermination factor [Desulfovibrio africanus str. Walvis
           Bay]
          Length = 161

 Score =  153 bits (388), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 35/160 (21%), Positives = 67/160 (41%), Gaps = 5/160 (3%)

Query: 11  KLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFR 70
           K    R  AR  A Q LY I+    S    + +     F      + ++        +  
Sbjct: 4   KKKSARRFAREKAFQVLYGIEFTDSSHLGAVRD----AFVEYPRPERQTKLDEKSDTFAW 59

Query: 71  VIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEY 130
            ++ G  + K  +D +I    ++ W  +R+  +  +ILR G+ E++    +P++V I+E 
Sbjct: 60  ELVKGTWESKAELDGIIGRF-SQNWKVTRIAKVDLTILRLGMFEILHRPDIPLKVAINEA 118

Query: 131 VCIAHDFFYGDEPKFINAVLDKVSRKEEIKRSGCVSAITQ 170
           V +A +F       F+N +LD  +R  +    G      +
Sbjct: 119 VELAKEFGDEHSRNFVNGILDAAARAVDTGEIGTRPPQAK 158


>gi|120403637|ref|YP_953466.1| transcription antitermination protein NusB [Mycobacterium
           vanbaalenii PYR-1]
 gi|166215702|sp|A1T8G0|NUSB_MYCVP RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|119956455|gb|ABM13460.1| NusB antitermination factor [Mycobacterium vanbaalenii PYR-1]
          Length = 163

 Score =  153 bits (388), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 41/146 (28%), Positives = 61/146 (41%), Gaps = 8/146 (5%)

Query: 8   KDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLE 67
            D K    R  AR  AV  L++ +  G +  E+             ++   +        
Sbjct: 2   PDRKGDRGRHQARKRAVDLLFEAEARGITAAEVAEARNALAEKRTDDIATLN-------P 54

Query: 68  WFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVII 127
           +   +  GV     HID LIS+ L + W+  RL  +  +ILR  V EL+    VP  V +
Sbjct: 55  YTVTVAQGVTAHAAHIDDLISAHL-QGWTLDRLPAVDRAILRVAVWELLHAEDVPEPVAV 113

Query: 128 SEYVCIAHDFFYGDEPKFINAVLDKV 153
            E V +A      D P F+N VL +V
Sbjct: 114 DEAVELAKQLSTDDSPGFVNGVLGQV 139


>gi|149378278|ref|ZP_01895989.1| NusB [Marinobacter algicola DG893]
 gi|149357443|gb|EDM45954.1| NusB [Marinobacter algicola DG893]
          Length = 158

 Score =  153 bits (388), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 45/159 (28%), Positives = 73/159 (45%), Gaps = 13/159 (8%)

Query: 4   QDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLH 63
           Q        +  R  AR  A+Q LYQ      S T+I SE+            V++    
Sbjct: 10  QPAPAGQPKAGDRRRARALAMQGLYQRHFSKSSITDIESEFI-----------VDNDMSK 58

Query: 64  VDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPV 123
           VD  +FR ++ GV   +  +D L+   L        +D I  +I+R G  EL     VP 
Sbjct: 59  VDAAYFRDLLRGVHREQAELDRLLEPFLDR--PIHEVDAIELAIVRLGAYELKHRLDVPY 116

Query: 124 EVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRS 162
           +V+I+E + +A  F   +  KF+N++LDK+S +  +  +
Sbjct: 117 KVVINEGIEMAKRFGGTEGHKFVNSLLDKLSHRLRLAET 155


>gi|121595089|ref|YP_986985.1| NusB antitermination factor [Acidovorax sp. JS42]
 gi|166215657|sp|A1W9I4|NUSB_ACISJ RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|120607169|gb|ABM42909.1| NusB antitermination factor [Acidovorax sp. JS42]
          Length = 177

 Score =  153 bits (388), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 42/155 (27%), Positives = 68/155 (43%), Gaps = 13/155 (8%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           R  AR  A+QALYQ  + G   T I           D      S +   D   +  ++HG
Sbjct: 35  RSRAREFALQALYQHLVGGNDATAI-----------DVFTRDLSGFHKADAAHYDALLHG 83

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
            +   Q++D LI+  L  K   S +  I  +++  GV E   C  VP  V+I+E + +A 
Sbjct: 84  CITTAQYMDELIAPQLDRK--MSEISPIEHAVMWIGVYEFQHCQDVPWRVVINECIELAK 141

Query: 136 DFFYGDEPKFINAVLDKVSRKEEIKRSGCVSAITQ 170
           +F   D  K++N VL+ ++ +          A  +
Sbjct: 142 EFGGTDGHKYVNGVLNGLAPQLRATEVAADKAAAR 176


>gi|158422890|ref|YP_001524182.1| antitermination protein [Azorhizobium caulinodans ORS 571]
 gi|158329779|dbj|BAF87264.1| antitermination protein [Azorhizobium caulinodans ORS 571]
          Length = 137

 Score =  153 bits (388), Expect = 8e-36,   Method: Composition-based stats.
 Identities = 52/138 (37%), Positives = 81/138 (58%), Gaps = 3/138 (2%)

Query: 24  VQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHI 83
           +QALYQ+DI G    EI++E+ET+    + E DV   Y   D   FR ++ GV+ +++ I
Sbjct: 1   MQALYQMDIAGTPVNEILAEFETHWLGREVEGDV---YPEADRALFRTVVEGVLAQQRTI 57

Query: 84  DLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEP 143
           D ++   LT  W   R+++++ + LRAG  ELI     P  V+I+EYV +A  FF  +E 
Sbjct: 58  DPMVDEALTAGWPLRRVELVMRATLRAGAFELIGKPETPARVVIAEYVNVAAAFFEREET 117

Query: 144 KFINAVLDKVSRKEEIKR 161
             +NAVLD ++RK   + 
Sbjct: 118 GMVNAVLDSLARKLRAEE 135


>gi|315646327|ref|ZP_07899447.1| NusB antitermination factor [Paenibacillus vortex V453]
 gi|315278526|gb|EFU41842.1| NusB antitermination factor [Paenibacillus vortex V453]
          Length = 152

 Score =  153 bits (387), Expect = 8e-36,   Method: Composition-based stats.
 Identities = 38/144 (26%), Positives = 72/144 (50%), Gaps = 2/144 (1%)

Query: 15  RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74
           +R +AR   VQ+LYQ+++    + E +S   +     + E +          E+   +++
Sbjct: 2   KRRVAREIVVQSLYQMEMNEVDSMEAVSMLLSEA-AEENETERVIGDEVQMKEYVLQLVN 60

Query: 75  GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134
           G  + K+ ID L++  L + W  SRL  +   ILR  V EL     VP +V ++E + ++
Sbjct: 61  GTWESKESIDELLAHYL-KGWQVSRLSRVDRQILRLAVYELSSREDVPGKVAVNEAIELS 119

Query: 135 HDFFYGDEPKFINAVLDKVSRKEE 158
             F   +  KF+N VL ++ ++ +
Sbjct: 120 KHFGTDESGKFVNGVLGRMIQELD 143


>gi|222111432|ref|YP_002553696.1| nusb antitermination factor [Acidovorax ebreus TPSY]
 gi|254772634|sp|B9MBL7|NUSB_DIAST RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|221730876|gb|ACM33696.1| NusB antitermination factor [Acidovorax ebreus TPSY]
          Length = 177

 Score =  153 bits (387), Expect = 8e-36,   Method: Composition-based stats.
 Identities = 42/155 (27%), Positives = 68/155 (43%), Gaps = 13/155 (8%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           R  AR  A+QALYQ  + G   T I           D      S +   D   +  ++HG
Sbjct: 35  RSRAREFALQALYQHLVGGNDATAI-----------DVFTRDLSGFHKADAAHYDALLHG 83

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
            +   Q++D LI+  L  K   S +  I  +++  GV E   C  VP  V+I+E + +A 
Sbjct: 84  CITTAQYMDELIAPQLDRK--MSEISPIEHAVMWIGVYEFQHCQDVPWRVVINECIELAK 141

Query: 136 DFFYGDEPKFINAVLDKVSRKEEIKRSGCVSAITQ 170
           +F   D  K++N VL+ ++ +          A  +
Sbjct: 142 EFGGTDGHKYVNGVLNGLAPQLRATEVAADKAAAR 176


>gi|118617385|ref|YP_905717.1| transcription antitermination protein NusB [Mycobacterium ulcerans
           Agy99]
 gi|118569495|gb|ABL04246.1| N utilization substance protein NusB [Mycobacterium ulcerans Agy99]
          Length = 173

 Score =  153 bits (387), Expect = 8e-36,   Method: Composition-based stats.
 Identities = 45/153 (29%), Positives = 69/153 (45%), Gaps = 12/153 (7%)

Query: 1   MTIQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESV 60
           M      K +K    R  AR  AV  +++ +  G    EI          A+T+ DV  +
Sbjct: 1   MPEGRPGKPVKG---RHQARKRAVDLMFEAEARGLGPGEIAD---LRTELAETKPDVAPL 54

Query: 61  YLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHS 120
           +      +   +  G+ +   HID LI+S L + W+  RL  +  +ILR  V EL+    
Sbjct: 55  H-----PYTAAVARGIGEHAAHIDDLITSHL-QGWTLDRLPAVDRAILRVAVWELLYADD 108

Query: 121 VPVEVIISEYVCIAHDFFYGDEPKFINAVLDKV 153
           VP  V + E V +A +    D P F+N VL +V
Sbjct: 109 VPEPVAVDEAVELAKELSTDDSPSFVNGVLGQV 141


>gi|183982195|ref|YP_001850486.1| N utilization substance protein NusB [Mycobacterium marinum M]
 gi|183175521|gb|ACC40631.1| N utilization substance protein NusB [Mycobacterium marinum M]
          Length = 173

 Score =  153 bits (387), Expect = 9e-36,   Method: Composition-based stats.
 Identities = 45/153 (29%), Positives = 68/153 (44%), Gaps = 12/153 (7%)

Query: 1   MTIQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESV 60
           M      K +K    R  AR  AV  +++ +  G    EI          A+T+ DV  +
Sbjct: 1   MPEGRPGKPVKG---RHQARKRAVDLMFEAEARGLGPGEIAD---LRTELAETKPDVAPL 54

Query: 61  YLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHS 120
           +      +   +  G+     HID LI+S L + W+  RL  +  +ILR  V EL+    
Sbjct: 55  H-----PYTAAVARGIDQHAAHIDDLITSHL-QGWTLDRLPAVDRAILRVAVWELLYADD 108

Query: 121 VPVEVIISEYVCIAHDFFYGDEPKFINAVLDKV 153
           VP  V + E V +A +    D P F+N VL +V
Sbjct: 109 VPEPVAVDEAVELAKELSTDDSPSFVNGVLGQV 141


>gi|147677514|ref|YP_001211729.1| transcription termination factor [Pelotomaculum thermopropionicum
           SI]
 gi|189035895|sp|A5D319|NUSB_PELTS RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|146273611|dbj|BAF59360.1| transcription termination factor [Pelotomaculum thermopropionicum
           SI]
          Length = 144

 Score =  153 bits (387), Expect = 9e-36,   Method: Composition-based stats.
 Identities = 34/147 (23%), Positives = 68/147 (46%), Gaps = 12/147 (8%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           R  AR  A+Q L+Q+D+ G    E               +D     L    E+ R+++ G
Sbjct: 3   RRQARERALQILFQVDVGGADPGEAFRL-----------MDEGFGELKKYQEFARLLVGG 51

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
            ++    ID +I+  +++ W+ +R+  +  +I+R  + E+  C  +P  V ++E V +  
Sbjct: 52  TLENLAAIDRVIAG-VSKDWNINRMANVDRNIIRMALYEIFFCEDIPYSVSVNEAVELGK 110

Query: 136 DFFYGDEPKFINAVLDKVSRKEEIKRS 162
            +   +  +FIN +L ++    E  R 
Sbjct: 111 TYGGEESGRFINGILGRIVESPEEYRP 137


>gi|295677368|ref|YP_003605892.1| NusB antitermination factor [Burkholderia sp. CCGE1002]
 gi|295437211|gb|ADG16381.1| NusB antitermination factor [Burkholderia sp. CCGE1002]
          Length = 144

 Score =  153 bits (387), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 43/153 (28%), Positives = 64/153 (41%), Gaps = 15/153 (9%)

Query: 10  LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF 69
           +K + RR   R  A Q LYQ  + G    EI           D +L     Y   D E  
Sbjct: 1   MKSARRRS--RELATQGLYQWLLSGSPGGEI-----------DAQLRGAQGYDKADHEHL 47

Query: 70  RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISE 129
             I+HGVM   + +   I+ CL       +L  +  ++L     EL     +P  V+I+E
Sbjct: 48  DAILHGVMRDSEELSAAIAPCLDR--PIDQLSPVERAVLLVAAFELKNHVDIPYRVVINE 105

Query: 130 YVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRS 162
            V +   F   D  K++N VLDK+S +     +
Sbjct: 106 AVELTKTFGGSDGYKYVNGVLDKLSAQLRAAET 138


>gi|330824837|ref|YP_004388140.1| NusB antitermination factor [Alicycliphilus denitrificans K601]
 gi|329310209|gb|AEB84624.1| NusB antitermination factor [Alicycliphilus denitrificans K601]
          Length = 181

 Score =  153 bits (387), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 43/156 (27%), Positives = 72/156 (46%), Gaps = 14/156 (8%)

Query: 1   MTIQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESV 60
           +T    +K    S  R  AR  A+QALYQ  + G   T I           D      S 
Sbjct: 24  LTATGARKAGSKSG-RSRAREFALQALYQHLVGGNDATAI-----------DLFTRDLSG 71

Query: 61  YLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHS 120
           +   D   +  ++HG ++  QH+D LI+  L  K   + +  I  +++  GV E   C  
Sbjct: 72  FHKADAAHYDALLHGCIETAQHMDALIAPLLDRK--MAEISPIEHAVMWIGVYEFQHCPD 129

Query: 121 VPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRK 156
           VP  V+I+E + +A +F   D  K++N +L+ ++ +
Sbjct: 130 VPWRVVINECIELAKEFGGTDGHKYVNGILNGLAPQ 165


>gi|319762696|ref|YP_004126633.1| transcription antitermination factor nusb [Alicycliphilus
           denitrificans BC]
 gi|317117257|gb|ADU99745.1| transcription antitermination factor NusB [Alicycliphilus
           denitrificans BC]
          Length = 181

 Score =  152 bits (386), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 43/156 (27%), Positives = 73/156 (46%), Gaps = 14/156 (8%)

Query: 1   MTIQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESV 60
           +T    +K    S  R  AR  A+QALYQ  + G   T I           D      S 
Sbjct: 24  LTATGARKAGSKSG-RSRAREFALQALYQHLVGGNDATAI-----------DLFTRDLSG 71

Query: 61  YLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHS 120
           +   D   +  ++HG ++ +QH+D LI+  L  K   + +  I  +++  GV E   C  
Sbjct: 72  FHKADAAHYDALLHGCIETEQHMDALIAPLLDRK--MAEISPIEHAVMWIGVYEFQHCPD 129

Query: 121 VPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRK 156
           VP  V+I+E + +A +F   D  K++N +L+ ++ +
Sbjct: 130 VPWRVVINECIELAKEFGGTDGHKYVNGILNGLAPQ 165


>gi|82701147|ref|YP_410713.1| NusB antitermination factor [Nitrosospira multiformis ATCC 25196]
 gi|119390789|sp|Q2YD50|NUSB_NITMU RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|82409212|gb|ABB73321.1| NusB antitermination factor [Nitrosospira multiformis ATCC 25196]
          Length = 158

 Score =  152 bits (386), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 43/157 (27%), Positives = 68/157 (43%), Gaps = 13/157 (8%)

Query: 8   KDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLE 67
           +      RR +AR  A+Q LYQ  + G S   I ++           L     +   D E
Sbjct: 13  RGTARKSRRRLARELALQGLYQWCVAGGSAGTIEAQ-----------LRDTEEFPKTDEE 61

Query: 68  WFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVII 127
           +F  ++HGV+ +   ++  I  CL     F+ L  +  SIL  G  EL     +P   +I
Sbjct: 62  YFSRLLHGVLMQAPELEKEIQPCLDR--PFNELSPVEISILLLGAYELERHPEIPYRAVI 119

Query: 128 SEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRSGC 164
           +E V +A  +      K++N VLDK++ K      G 
Sbjct: 120 NEAVELAKAYGGTHGHKYVNGVLDKLAVKLRAAEIGA 156


>gi|299537762|ref|ZP_07051051.1| N utilization substance protein B-like protein [Lysinibacillus
           fusiformis ZC1]
 gi|298726741|gb|EFI67327.1| N utilization substance protein B-like protein [Lysinibacillus
           fusiformis ZC1]
          Length = 127

 Score =  152 bits (386), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 37/143 (25%), Positives = 63/143 (44%), Gaps = 17/143 (11%)

Query: 15  RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74
           +R  AR  A+Q L+Q+D    +  E +   +                      ++  I++
Sbjct: 2   KRHEAREKALQVLFQLDNTDLTVEEAMGHIK----------------GQPTNAFYEKIVN 45

Query: 75  GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134
           G  +  + ID  +   L EKWS +RL  I  ++LR  V EL+     P  V+++E + + 
Sbjct: 46  GTAEHLEEIDATLEQHL-EKWSLARLPKIERTVLRLAVYELLYMPETPKRVVLNEAIELC 104

Query: 135 HDFFYGDEPKFINAVLDKVSRKE 157
             F      KF+N VL K + +E
Sbjct: 105 KTFGDDSSSKFVNGVLSKFTEQE 127


>gi|41407196|ref|NP_960032.1| transcription antitermination protein NusB [Mycobacterium avium
           subsp. paratuberculosis K-10]
 gi|118463415|ref|YP_882592.1| transcription antitermination protein NusB [Mycobacterium avium
           104]
 gi|254775857|ref|ZP_05217373.1| transcription antitermination protein NusB [Mycobacterium avium
           subsp. avium ATCC 25291]
 gi|81571413|sp|Q741J2|NUSB_MYCPA RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|166215696|sp|A0QI54|NUSB_MYCA1 RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|41395547|gb|AAS03415.1| NusB [Mycobacterium avium subsp. paratuberculosis K-10]
 gi|118164702|gb|ABK65599.1| transcription antitermination factor NusB [Mycobacterium avium 104]
          Length = 156

 Score =  152 bits (386), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 47/143 (32%), Positives = 66/143 (46%), Gaps = 9/143 (6%)

Query: 11  KLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFR 70
           K    R  AR  AV  L++ +  G S  E++         ADT  +V  +       +  
Sbjct: 3   KPLRGRHQARKRAVDLLFEAEARGLSPAEVVD---VRTGLADTNPEVAPL-----QPYTA 54

Query: 71  VIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEY 130
            +  GV D   HID LISS L + W+  RL  +  +ILR  V EL+    VP  V + E 
Sbjct: 55  AVARGVGDHAAHIDDLISSHL-QGWTLDRLPAVDRAILRVAVWELLYADDVPEPVAVDEA 113

Query: 131 VCIAHDFFYGDEPKFINAVLDKV 153
           V +A +    D P F+N VL +V
Sbjct: 114 VQLAKELSTDDSPGFVNGVLGQV 136


>gi|126653060|ref|ZP_01725195.1| transcription antitermination protein NusB [Bacillus sp. B14905]
 gi|126590161|gb|EAZ84285.1| transcription antitermination protein NusB [Bacillus sp. B14905]
          Length = 127

 Score =  152 bits (386), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 37/143 (25%), Positives = 62/143 (43%), Gaps = 17/143 (11%)

Query: 15  RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74
           +R  AR  A+Q L+Q+D    +  E +   +                      ++  I+ 
Sbjct: 2   KRHEAREKALQVLFQLDNTDLTVEEAMGHIK----------------GQPTNAFYEKIVT 45

Query: 75  GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134
           G  +  + ID  +   L EKWS +RL  I  ++LR  V EL+     P  V+++E + + 
Sbjct: 46  GTAEHLEEIDATLEQHL-EKWSLARLPKIERTVLRLAVYELLYMPETPKRVVLNEAIELC 104

Query: 135 HDFFYGDEPKFINAVLDKVSRKE 157
             F      KF+N VL K + +E
Sbjct: 105 KTFGDDSSSKFVNGVLSKFTEQE 127


>gi|83311445|ref|YP_421709.1| transcription termination factor [Magnetospirillum magneticum
           AMB-1]
 gi|119390781|sp|Q2W4S5|NUSB_MAGMM RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|82946286|dbj|BAE51150.1| Transcription termination factor [Magnetospirillum magneticum
           AMB-1]
          Length = 156

 Score =  152 bits (386), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 47/153 (30%), Positives = 75/153 (49%), Gaps = 5/153 (3%)

Query: 14  HRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVII 73
            +R  ARLAAVQ LYQ+++ G  T   + + +  R       + +      D      ++
Sbjct: 9   AKRSAARLAAVQVLYQMEMTGADTERALQDAKDRRAA-----EPKGRMADPDNSLLNQVV 63

Query: 74  HGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCI 133
            GV  + + ID  +   L+  W+  RL+ +L +I+RAG  EL      P  V ISE+V +
Sbjct: 64  RGVSAQLEDIDGHVGRALSGDWTVERLEAVLRAIVRAGAWELSARPQTPARVCISEWVDV 123

Query: 134 AHDFFYGDEPKFINAVLDKVSRKEEIKRSGCVS 166
           AH F+ G EP  +N VLD +++       G  +
Sbjct: 124 AHAFYSGPEPGLVNGVLDHLAQTLRGGEMGKGA 156


>gi|257893505|ref|ZP_05673158.1| transcription antiterminator NusB [Enterococcus faecium 1,231,408]
 gi|257829884|gb|EEV56491.1| transcription antiterminator NusB [Enterococcus faecium 1,231,408]
          Length = 152

 Score =  152 bits (385), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 38/154 (24%), Positives = 66/154 (42%), Gaps = 3/154 (1%)

Query: 3   IQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYL 62
           ++  +K +     R   R  A+QAL+ +D     T E            D   + ES ++
Sbjct: 1   MKTKRKRMNKELSRHEIREMALQALFPLDFNADLTKEDAIFNAIELDHRDMINEDESEFV 60

Query: 63  HVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVP 122
            V   +   ++ GV  +K  +D +I   L   W  +R+  +   ILR  + E+     VP
Sbjct: 61  PV---YLDTLVGGVCAKKDELDKVIEKHLKNNWHINRISKMDLVILRIAIFEMTYVTDVP 117

Query: 123 VEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRK 156
             V ++E + +A  F      KF+N VL  V ++
Sbjct: 118 AAVALNEAIELAKTFSDDRSRKFVNGVLSNVLKE 151


>gi|332525525|ref|ZP_08401682.1| putative N utilization substance B [Rubrivivax benzoatilyticus JA2]
 gi|332109092|gb|EGJ10015.1| putative N utilization substance B [Rubrivivax benzoatilyticus JA2]
          Length = 159

 Score =  152 bits (385), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 38/156 (24%), Positives = 65/156 (41%), Gaps = 15/156 (9%)

Query: 1   MTIQDN--KKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVE 58
           M+ +    +K       R  +R  A+Q LY+  I G     I           D  +  +
Sbjct: 1   MSTEPTAARKRAAPKSARRRSREIALQGLYEWLISGADAGTI-----------DAHMREQ 49

Query: 59  SVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIEC 118
             +   D   F  ++HG +     +D +++  +      ++L  +  ++L  G  EL  C
Sbjct: 50  DGFDKCDRAHFDALLHGCIAEASALDAVLARHVDR--RTNQLSPVEHAVLMIGAYELTHC 107

Query: 119 HSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVS 154
             VP  V I+E V +A  F   D  K++N VLDK +
Sbjct: 108 LEVPYRVAINEAVELAKSFGGTDGHKYVNGVLDKAA 143


>gi|145224333|ref|YP_001135011.1| transcription antitermination protein NusB [Mycobacterium gilvum
           PYR-GCK]
 gi|315444665|ref|YP_004077544.1| NusB antitermination factor [Mycobacterium sp. Spyr1]
 gi|189035893|sp|A4TBX3|NUSB_MYCGI RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|145216819|gb|ABP46223.1| NusB antitermination factor [Mycobacterium gilvum PYR-GCK]
 gi|315262968|gb|ADT99709.1| NusB antitermination factor [Mycobacterium sp. Spyr1]
          Length = 164

 Score =  152 bits (385), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 45/146 (30%), Positives = 64/146 (43%), Gaps = 8/146 (5%)

Query: 8   KDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLE 67
            D K    R  AR  AV  L++ +  G +  E+    E     AD   D  +        
Sbjct: 2   PDRKGDRGRHQARKRAVDLLFEAEARGITAAEVA---EARNALADNGADDIAPL----NP 54

Query: 68  WFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVII 127
           +   +  GV D   HID LIS+ L + W+  RL  +  ++LR  V EL+    VP  V +
Sbjct: 55  YTVTVARGVTDHAAHIDDLISAHL-QGWTLDRLPAVDRAVLRVAVWELLHAVDVPEPVAV 113

Query: 128 SEYVCIAHDFFYGDEPKFINAVLDKV 153
            E V +A      D P F+N VL +V
Sbjct: 114 DEAVELAKQLSTDDSPGFVNGVLGQV 139


>gi|296140288|ref|YP_003647531.1| NusB antitermination factor [Tsukamurella paurometabola DSM 20162]
 gi|296028422|gb|ADG79192.1| NusB antitermination factor [Tsukamurella paurometabola DSM 20162]
          Length = 165

 Score =  152 bits (385), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 46/154 (29%), Positives = 73/154 (47%), Gaps = 8/154 (5%)

Query: 1   MTIQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESV 60
           M  Q   K  K S  R  AR  AV  L++++  G   T++       R  A  +  V  V
Sbjct: 1   MPDQSENKRPKKSGARHRARKRAVDLLFEVEARG--VTDVDGLLAERRTLAADDASVPPV 58

Query: 61  YLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHS 120
                 E+   ++ GV   ++ +D +I+S LT  W+ +RL  +  +ILR  V EL     
Sbjct: 59  -----SEYTAQLVTGVDVDREQLDSVITSHLT-GWTLARLPAVDRAILRVAVWELFNAPD 112

Query: 121 VPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVS 154
           VP  V++ E V +A +    + P ++N VL KV+
Sbjct: 113 VPPAVVVDEAVELAKELSTDESPSYLNGVLGKVA 146


>gi|254180977|ref|ZP_04887575.1| transcription antitermination factor NusB [Burkholderia
           pseudomallei 1655]
 gi|184211516|gb|EDU08559.1| transcription antitermination factor NusB [Burkholderia
           pseudomallei 1655]
          Length = 145

 Score =  152 bits (385), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 43/147 (29%), Positives = 62/147 (42%), Gaps = 14/147 (9%)

Query: 10  LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF 69
           +K S RR  +R  A Q LYQ  +   + +EI           D +L     Y   D    
Sbjct: 1   MKKSARR-QSRELATQGLYQWLLSNAAPSEI-----------DAQLRGALGYDKADKTLL 48

Query: 70  RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISE 129
             I+HGV+     +   IS  L       +L  +  ++L     EL      P  VII+E
Sbjct: 49  DTILHGVIREHATLAEAISPSLDR--PIDQLSPVERAVLLIATYELTHQIETPYRVIINE 106

Query: 130 YVCIAHDFFYGDEPKFINAVLDKVSRK 156
            V +A  F   D  K++N VLDK++ K
Sbjct: 107 AVELAKTFGGSDGYKYVNGVLDKLAVK 133


>gi|295399119|ref|ZP_06809101.1| NusB antitermination factor [Geobacillus thermoglucosidasius
           C56-YS93]
 gi|312110278|ref|YP_003988594.1| NusB antitermination factor [Geobacillus sp. Y4.1MC1]
 gi|294978585|gb|EFG54181.1| NusB antitermination factor [Geobacillus thermoglucosidasius
           C56-YS93]
 gi|311215379|gb|ADP73983.1| NusB antitermination factor [Geobacillus sp. Y4.1MC1]
          Length = 132

 Score =  152 bits (385), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 43/147 (29%), Positives = 67/147 (45%), Gaps = 16/147 (10%)

Query: 15  RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74
           +R  AR  A+QAL+QID+      E +            E D           + R ++ 
Sbjct: 2   KRHEAREKALQALFQIDVGRIPPEEALQ-----NVMGGEEAD----------SFLRQLVF 46

Query: 75  GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134
           GV + ++ ID L+ + L EKW+  R+  +  +ILR    E+     VPV+V + E V +A
Sbjct: 47  GVTEHQEEIDELLRANL-EKWTLERVANVDRAILRMAAYEMKYLDDVPVKVSLDEAVELA 105

Query: 135 HDFFYGDEPKFINAVLDKVSRKEEIKR 161
             F      +F+N VL KV     I+ 
Sbjct: 106 KKFGDTKSGRFVNGVLSKVKDALHIQE 132


>gi|257885163|ref|ZP_05664816.1| antitermination protein NusB [Enterococcus faecium 1,231,501]
 gi|257821015|gb|EEV48149.1| antitermination protein NusB [Enterococcus faecium 1,231,501]
          Length = 149

 Score =  152 bits (385), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 38/150 (25%), Positives = 64/150 (42%), Gaps = 3/150 (2%)

Query: 10  LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF 69
           +     R   R  A+QAL+ +D     T E            D   + ES ++ V   + 
Sbjct: 1   MNKELSRHEIREMALQALFPLDFNADLTKEDAIFNAIELDHRDMINEDESEFVPV---YL 57

Query: 70  RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISE 129
             ++ GV  +K  +D +I   L   W  +R+  +  +ILR  + E+     VP  V ++E
Sbjct: 58  DTLVGGVCAKKDELDKVIEKHLKNNWHINRISKMDLAILRIAIFEMTYVTDVPAAVALNE 117

Query: 130 YVCIAHDFFYGDEPKFINAVLDKVSRKEEI 159
            + +A  F      KF+N VL  V ++ E 
Sbjct: 118 AIELAKTFSDDRSRKFVNGVLSNVLKELEA 147


>gi|53720238|ref|YP_109224.1| transcription antitermination protein NusB [Burkholderia
           pseudomallei K96243]
 gi|53725935|ref|YP_103717.1| transcription antitermination protein NusB [Burkholderia mallei
           ATCC 23344]
 gi|67643981|ref|ZP_00442724.1| transcription antitermination factor NusB [Burkholderia mallei GB8
           horse 4]
 gi|83718415|ref|YP_442074.1| transcription antitermination protein NusB [Burkholderia
           thailandensis E264]
 gi|121599031|ref|YP_992107.1| transcription antitermination protein NusB [Burkholderia mallei
           SAVP1]
 gi|124385249|ref|YP_001028552.1| transcription antitermination protein NusB [Burkholderia mallei
           NCTC 10229]
 gi|126438627|ref|YP_001060031.1| transcription antitermination protein NusB [Burkholderia
           pseudomallei 668]
 gi|126448499|ref|YP_001081550.1| transcription antitermination protein NusB [Burkholderia mallei
           NCTC 10247]
 gi|126452933|ref|YP_001067310.1| transcription antitermination protein NusB [Burkholderia
           pseudomallei 1106a]
 gi|134280178|ref|ZP_01766889.1| transcription antitermination factor NusB [Burkholderia
           pseudomallei 305]
 gi|166998350|ref|ZP_02264210.1| transcription antitermination factor NusB [Burkholderia mallei
           PRL-20]
 gi|167580929|ref|ZP_02373803.1| transcription antitermination protein NusB [Burkholderia
           thailandensis TXDOH]
 gi|167619020|ref|ZP_02387651.1| transcription antitermination protein NusB [Burkholderia
           thailandensis Bt4]
 gi|167739782|ref|ZP_02412556.1| transcription antitermination protein NusB [Burkholderia
           pseudomallei 14]
 gi|167817004|ref|ZP_02448684.1| transcription antitermination protein NusB [Burkholderia
           pseudomallei 91]
 gi|167825416|ref|ZP_02456887.1| transcription antitermination protein NusB [Burkholderia
           pseudomallei 9]
 gi|167846905|ref|ZP_02472413.1| transcription antitermination protein NusB [Burkholderia
           pseudomallei B7210]
 gi|167895484|ref|ZP_02482886.1| transcription antitermination protein NusB [Burkholderia
           pseudomallei 7894]
 gi|167903866|ref|ZP_02491071.1| transcription antitermination protein NusB [Burkholderia
           pseudomallei NCTC 13177]
 gi|167912133|ref|ZP_02499224.1| transcription antitermination protein NusB [Burkholderia
           pseudomallei 112]
 gi|167920107|ref|ZP_02507198.1| transcription antitermination protein NusB [Burkholderia
           pseudomallei BCC215]
 gi|217420428|ref|ZP_03451933.1| transcription antitermination factor NusB [Burkholderia
           pseudomallei 576]
 gi|226193837|ref|ZP_03789439.1| transcription antitermination factor NusB [Burkholderia
           pseudomallei Pakistan 9]
 gi|237813433|ref|YP_002897884.1| transcription antitermination factor NusB [Burkholderia
           pseudomallei MSHR346]
 gi|242315882|ref|ZP_04814898.1| transcription antitermination factor NusB [Burkholderia
           pseudomallei 1106b]
 gi|254175420|ref|ZP_04882080.1| transcription antitermination factor NusB [Burkholderia mallei ATCC
           10399]
 gi|254191824|ref|ZP_04898327.1| transcription antitermination factor NusB [Burkholderia
           pseudomallei Pasteur 52237]
 gi|254196083|ref|ZP_04902508.1| transcription antitermination factor NusB [Burkholderia
           pseudomallei S13]
 gi|254202417|ref|ZP_04908780.1| transcription antitermination factor NusB [Burkholderia mallei FMH]
 gi|254207748|ref|ZP_04914098.1| transcription antitermination factor NusB [Burkholderia mallei JHU]
 gi|254261365|ref|ZP_04952419.1| transcription antitermination factor NusB [Burkholderia
           pseudomallei 1710a]
 gi|254298898|ref|ZP_04966348.1| transcription antitermination factor NusB [Burkholderia
           pseudomallei 406e]
 gi|254356350|ref|ZP_04972626.1| transcription antitermination factor NusB [Burkholderia mallei
           2002721280]
 gi|257138259|ref|ZP_05586521.1| transcription antitermination protein NusB [Burkholderia
           thailandensis E264]
 gi|81604460|sp|Q62HV3|NUSB_BURMA RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|81607761|sp|Q63RP4|NUSB_BURPS RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|119372283|sp|Q2SYC5|NUSB_BURTA RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|166215667|sp|A3MMR4|NUSB_BURM7 RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|166215668|sp|A2S9D3|NUSB_BURM9 RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|166215669|sp|A1V1K4|NUSB_BURMS RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|166215670|sp|A3NY89|NUSB_BURP0 RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|166215671|sp|A3NCG0|NUSB_BURP6 RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|52210652|emb|CAH36636.1| probable N utilization substance protein B [Burkholderia
           pseudomallei K96243]
 gi|52429358|gb|AAU49951.1| N utilization substance protein B [Burkholderia mallei ATCC 23344]
 gi|83652240|gb|ABC36303.1| transcription antitermination factor NusB [Burkholderia
           thailandensis E264]
 gi|121227841|gb|ABM50359.1| transcription antitermination factor NusB [Burkholderia mallei
           SAVP1]
 gi|124293269|gb|ABN02538.1| N utilization substance protein B [Burkholderia mallei NCTC 10229]
 gi|126218120|gb|ABN81626.1| transcription antitermination factor NusB [Burkholderia
           pseudomallei 668]
 gi|126226575|gb|ABN90115.1| transcription antitermination factor NusB [Burkholderia
           pseudomallei 1106a]
 gi|126241369|gb|ABO04462.1| transcription antitermination factor NusB [Burkholderia mallei NCTC
           10247]
 gi|134248185|gb|EBA48268.1| transcription antitermination factor NusB [Burkholderia
           pseudomallei 305]
 gi|147746664|gb|EDK53741.1| transcription antitermination factor NusB [Burkholderia mallei FMH]
 gi|147751642|gb|EDK58709.1| transcription antitermination factor NusB [Burkholderia mallei JHU]
 gi|148025347|gb|EDK83501.1| transcription antitermination factor NusB [Burkholderia mallei
           2002721280]
 gi|157809075|gb|EDO86245.1| transcription antitermination factor NusB [Burkholderia
           pseudomallei 406e]
 gi|157939495|gb|EDO95165.1| transcription antitermination factor NusB [Burkholderia
           pseudomallei Pasteur 52237]
 gi|160696464|gb|EDP86434.1| transcription antitermination factor NusB [Burkholderia mallei ATCC
           10399]
 gi|169652827|gb|EDS85520.1| transcription antitermination factor NusB [Burkholderia
           pseudomallei S13]
 gi|217395840|gb|EEC35857.1| transcription antitermination factor NusB [Burkholderia
           pseudomallei 576]
 gi|225934142|gb|EEH30127.1| transcription antitermination factor NusB [Burkholderia
           pseudomallei Pakistan 9]
 gi|237505806|gb|ACQ98124.1| transcription antitermination factor NusB [Burkholderia
           pseudomallei MSHR346]
 gi|238525458|gb|EEP88886.1| transcription antitermination factor NusB [Burkholderia mallei GB8
           horse 4]
 gi|242139121|gb|EES25523.1| transcription antitermination factor NusB [Burkholderia
           pseudomallei 1106b]
 gi|243065419|gb|EES47605.1| transcription antitermination factor NusB [Burkholderia mallei
           PRL-20]
 gi|254220054|gb|EET09438.1| transcription antitermination factor NusB [Burkholderia
           pseudomallei 1710a]
          Length = 145

 Score =  152 bits (385), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 43/147 (29%), Positives = 61/147 (41%), Gaps = 14/147 (9%)

Query: 10  LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF 69
           +K S RR  +R  A Q LYQ  +   +  EI           D +L     Y   D    
Sbjct: 1   MKKSARR-QSRELATQGLYQWLLSNAAPGEI-----------DAQLRGALGYDKADKTLL 48

Query: 70  RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISE 129
             I+HGV+     +   IS  L       +L  +  ++L     EL      P  VII+E
Sbjct: 49  DTILHGVIREHATLAEAISPSLDR--PIDQLSPVERAVLLIATYELTHQIETPYRVIINE 106

Query: 130 YVCIAHDFFYGDEPKFINAVLDKVSRK 156
            V +A  F   D  K++N VLDK++ K
Sbjct: 107 AVELAKTFGGSDGYKYVNGVLDKLAVK 133


>gi|209517108|ref|ZP_03265955.1| NusB antitermination factor [Burkholderia sp. H160]
 gi|209502501|gb|EEA02510.1| NusB antitermination factor [Burkholderia sp. H160]
          Length = 144

 Score =  152 bits (385), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 43/153 (28%), Positives = 64/153 (41%), Gaps = 15/153 (9%)

Query: 10  LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF 69
           +K + RR   R  A Q LYQ  + G    EI           D +L     Y   D E  
Sbjct: 1   MKSARRRS--RELATQGLYQWLLSGSPGGEI-----------DAQLRGAQGYDKADHEHL 47

Query: 70  RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISE 129
             I+HGVM   + +   I+ CL       +L  +  ++L     EL     +P  V+I+E
Sbjct: 48  DAILHGVMRDSEALSAAIAPCLDR--PIDQLSPVERAVLLVAAFELKNHLDIPYRVVINE 105

Query: 130 YVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRS 162
            V +   F   D  K++N VLDK+S +     +
Sbjct: 106 AVELTKTFGGSDGYKYVNGVLDKLSAQLRAAET 138


>gi|254253011|ref|ZP_04946329.1| Transcription termination factor [Burkholderia dolosa AUO158]
 gi|124895620|gb|EAY69500.1| Transcription termination factor [Burkholderia dolosa AUO158]
          Length = 145

 Score =  152 bits (384), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 44/159 (27%), Positives = 68/159 (42%), Gaps = 19/159 (11%)

Query: 10  LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF 69
           +K S RR  +R  A Q LYQ  +   S+ EI           D +L     Y   D +  
Sbjct: 1   MKKSARR-QSRELATQGLYQWLLSNASSGEI-----------DAQLRGALGYDKADKDLL 48

Query: 70  RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISE 129
             I+HGV+     +   I+  L       +L  +  ++L     EL      P  V+I+E
Sbjct: 49  DAILHGVIREHATLVEAIAPALDR--PIDQLSPVERAVLLIATFELTHHIETPYRVVINE 106

Query: 130 YVCIAHDFFYGDEPKFINAVLDKVSRKE-----EIKRSG 163
            V +A  F   D  K++N VLDK++ K      + +R+G
Sbjct: 107 AVELAKTFGGSDGYKYVNGVLDKLAAKLRPAETQARRNG 145


>gi|187925077|ref|YP_001896719.1| transcription antitermination protein NusB [Burkholderia
           phytofirmans PsJN]
 gi|238689481|sp|B2T6D1|NUSB_BURPP RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|187716271|gb|ACD17495.1| NusB antitermination factor [Burkholderia phytofirmans PsJN]
          Length = 144

 Score =  152 bits (384), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 42/153 (27%), Positives = 66/153 (43%), Gaps = 15/153 (9%)

Query: 10  LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF 69
           +K + RR   R  A Q LYQ  + G    EI           D +L     +   D E  
Sbjct: 1   MKSARRRS--RELATQGLYQWLLSGSPGGEI-----------DAQLRGAQGFDKADHEHL 47

Query: 70  RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISE 129
             I+HGV+   + +   I+ CL       +L  +  ++L     EL     +P  V+I+E
Sbjct: 48  DAILHGVIRDSEALSAAIAPCLDR--PIEQLSPVERAVLLVAAFELKNHVDIPYRVVINE 105

Query: 130 YVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRS 162
            V +A  F   D  K++N VLDK+S +  +  +
Sbjct: 106 AVELAKTFGGADGYKYVNGVLDKLSAQLRVDET 138


>gi|167720799|ref|ZP_02404035.1| transcription antitermination protein NusB [Burkholderia
           pseudomallei DM98]
          Length = 145

 Score =  152 bits (384), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 43/147 (29%), Positives = 61/147 (41%), Gaps = 14/147 (9%)

Query: 10  LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF 69
           +K S RR  +R  A Q LYQ  +   +  EI           D +L     Y   D    
Sbjct: 1   MKKSARR-QSRELATQGLYQWLLSNAAPGEI-----------DAQLRGALGYDKADKTLL 48

Query: 70  RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISE 129
             I+HGV+     +   IS  L       +L  +  ++L     EL      P  VII+E
Sbjct: 49  DTILHGVIREHATLAEAISPSLDR--PIEQLSPVERAVLLIATYELTHQIETPYRVIINE 106

Query: 130 YVCIAHDFFYGDEPKFINAVLDKVSRK 156
            V +A  F   D  K++N VLDK++ K
Sbjct: 107 AVELAKTFGGSDGYKYVNGVLDKLAVK 133


>gi|186475383|ref|YP_001856853.1| transcription antitermination protein NusB [Burkholderia phymatum
           STM815]
 gi|238691269|sp|B2JED0|NUSB_BURP8 RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|184191842|gb|ACC69807.1| NusB antitermination factor [Burkholderia phymatum STM815]
          Length = 145

 Score =  152 bits (384), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 43/157 (27%), Positives = 67/157 (42%), Gaps = 15/157 (9%)

Query: 10  LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF 69
           +K + RR   R  A Q LYQ  + G    EI           D +L     Y   D E  
Sbjct: 1   MKSARRRS--RELATQGLYQWLLSGSPAGEI-----------DAQLRGAQGYDKADHEHL 47

Query: 70  RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISE 129
             I+HGV+   + +   ++ CL       +L  +  ++L     EL     +P  V+I+E
Sbjct: 48  DAILHGVIRDSEALSADLAPCLDR--PIDQLSPVERAVLLVAAYELKNHIDIPYRVVINE 105

Query: 130 YVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRSGCVS 166
            V +A  F   D  K++N VLDK+S K  +  +   +
Sbjct: 106 AVELAKTFGGADGYKYVNGVLDKLSAKLRVDETQAAA 142


>gi|15842067|ref|NP_337104.1| transcription antitermination protein NusB [Mycobacterium
           tuberculosis CDC1551]
 gi|13882348|gb|AAK46918.1| N utilization substance protein B [Mycobacterium tuberculosis
           CDC1551]
          Length = 290

 Score =  152 bits (384), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 44/145 (30%), Positives = 70/145 (48%), Gaps = 9/145 (6%)

Query: 9   DLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEW 68
           D K    R  AR  AV  L++ ++ G S  E++    T    A+ + D+  ++      +
Sbjct: 3   DRKPVRGRHQARKRAVALLFEAEVRGISAAEVVD---TRAALAEAKPDIARLH-----PY 54

Query: 69  FRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIIS 128
              +  GV +   HID LI++ L   W+  RL  +  +ILR  V EL+    VP  V++ 
Sbjct: 55  TAAVARGVSEHAAHIDDLITAHL-RGWTLDRLPAVDRAILRVSVWELLHAADVPEPVVVD 113

Query: 129 EYVCIAHDFFYGDEPKFINAVLDKV 153
           E V +A +    D P F+N VL +V
Sbjct: 114 EAVQLAKELSTDDSPGFVNGVLGQV 138


>gi|323527047|ref|YP_004229200.1| NusB antitermination factor [Burkholderia sp. CCGE1001]
 gi|323384049|gb|ADX56140.1| NusB antitermination factor [Burkholderia sp. CCGE1001]
          Length = 144

 Score =  152 bits (384), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 42/153 (27%), Positives = 66/153 (43%), Gaps = 15/153 (9%)

Query: 10  LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF 69
           +K + RR   R  A Q LYQ  + G    EI           D +L     +   D E  
Sbjct: 1   MKSARRRS--RELATQGLYQWLLSGSPGGEI-----------DAQLRGAQGFDKADHEHL 47

Query: 70  RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISE 129
             I+HGV+   + +   I+ CL       +L  +  ++L     EL     +P  V+I+E
Sbjct: 48  DAILHGVIRDSEALSADIAPCLDR--PIDQLSPVERAVLLVAAFELKNHIDIPYRVVINE 105

Query: 130 YVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRS 162
            V +A  F   D  K++N VLDK++ K  +  +
Sbjct: 106 AVELAKTFGGADGYKYVNGVLDKLAAKLRVTET 138


>gi|330815784|ref|YP_004359489.1| NusB antitermination factor [Burkholderia gladioli BSR3]
 gi|327368177|gb|AEA59533.1| NusB antitermination factor [Burkholderia gladioli BSR3]
          Length = 144

 Score =  152 bits (384), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 40/155 (25%), Positives = 65/155 (41%), Gaps = 14/155 (9%)

Query: 10  LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF 69
           +K S RR  +R  A Q LYQ  +   ST EI           D +L     Y   D E  
Sbjct: 1   MKKSARR-QSRELATQGLYQWLLSNASTGEI-----------DAQLRGAQGYEKADRELL 48

Query: 70  RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISE 129
             I++GV+     +  +++  L       +L  +  ++L     EL      P  V+I+E
Sbjct: 49  ETIVYGVVREHADLAAILAPNLDR--PIEQLSPVERAVLLMATFELKHQIETPYRVVINE 106

Query: 130 YVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRSGC 164
            + +   F   D  K++N VLDK++ K   + +  
Sbjct: 107 AIELTKTFGGSDGHKYVNGVLDKLALKLRPEEAAA 141


>gi|254821798|ref|ZP_05226799.1| transcription antitermination protein NusB [Mycobacterium
           intracellulare ATCC 13950]
          Length = 169

 Score =  152 bits (384), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 42/138 (30%), Positives = 62/138 (44%), Gaps = 9/138 (6%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           R  AR  AV  L++ +  G S  E++           T L   +  +     +   +  G
Sbjct: 8   RHQARKRAVDLLFEAEARGLSPAEVVDVR--------TGLAEANPEIAPLQPYTAAVARG 59

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
           V +   H+D LISS L + W+  RL  +  +ILR  V EL+    VP  V + E V +A 
Sbjct: 60  VGEHAAHVDDLISSHL-QGWTLDRLPAVDRAILRVAVWELLYADDVPEPVAVDEAVQLAK 118

Query: 136 DFFYGDEPKFINAVLDKV 153
           +    D P F+N VL  V
Sbjct: 119 ELSTDDSPGFVNGVLGHV 136


>gi|237785587|ref|YP_002906292.1| N utilization substance protein B [Corynebacterium kroppenstedtii
           DSM 44385]
 gi|237758499|gb|ACR17749.1| N utilization substance protein B [Corynebacterium kroppenstedtii
           DSM 44385]
          Length = 192

 Score =  152 bits (384), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 40/162 (24%), Positives = 73/162 (45%), Gaps = 9/162 (5%)

Query: 3   IQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYL 62
            +  +   K    R  AR  AV  L++ +        ++ +        +   D ES  L
Sbjct: 36  TKSTRSGFKRHGSRYKARRRAVDILFEAEFRDQDPVYVVEQRR------ELSQDSESGVL 89

Query: 63  HVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVP 122
            V  ++   I+ GV +    ID  I+S L+  W   R+  +  +++R    EL+    VP
Sbjct: 90  PV-SDYTATIVSGVAENLDGIDSAIASHLSSTWRLDRIPAVDRAVMRVSTWELLHNEEVP 148

Query: 123 VEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRSGC 164
            +V +SE + +A ++     P ++NAVLD ++   E++RS  
Sbjct: 149 PKVAVSEGIELASEYSTDVAPAYVNAVLDDIA--GEVQRSQS 188


>gi|114327667|ref|YP_744824.1| n utilization substance protein B [Granulibacter bethesdensis
           CGDNIH1]
 gi|119390773|sp|Q0BTF1|NUSB_GRABC RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|114315841|gb|ABI61901.1| n utilization substance protein B [Granulibacter bethesdensis
           CGDNIH1]
          Length = 163

 Score =  152 bits (384), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 46/153 (30%), Positives = 81/153 (52%), Gaps = 2/153 (1%)

Query: 11  KLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCA--DTELDVESVYLHVDLEW 68
           + +  R  +R+AAVQAL+Q +    S   +I ++  +R  A    +   +      ++  
Sbjct: 3   RRTRPRTASRVAAVQALFQGEQAQESLEAVIEQFVRFRLGALPGQDGFEDGRIPDAEVPL 62

Query: 69  FRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIIS 128
           F  I+      +  ID L+ + L  +W  +RLD +L ++LRAG  EL      P  V+I+
Sbjct: 63  FSRIVRAATKEQDVIDPLLITALPAEWPLARLDPVLRALLRAGACELRMKDGPPPRVVIN 122

Query: 129 EYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKR 161
           EY+ IAH FF G+EP+ +N +L+ ++R+   + 
Sbjct: 123 EYLDIAHGFFQGEEPRMVNGILNALARQLRPEE 155


>gi|95929563|ref|ZP_01312305.1| NusB antitermination factor [Desulfuromonas acetoxidans DSM 684]
 gi|95134260|gb|EAT15917.1| NusB antitermination factor [Desulfuromonas acetoxidans DSM 684]
          Length = 152

 Score =  152 bits (384), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 38/147 (25%), Positives = 72/147 (48%), Gaps = 5/147 (3%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYE-TYRFCADT--ELDVESVYLHVDLEWFRV- 71
           R   R  A++ LY +        E++S++   +RF  D   E +     L  D+ +F   
Sbjct: 6   RRNGREYALKILYSLYDQDAPLDEVLSDFWGNFRFSNDVLGEPEEPQSPLSDDVIFFSEQ 65

Query: 72  IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
           ++ GV +  + ID ++    ++ W+  R+  +  S++R    ELI     P  V+I+E +
Sbjct: 66  LVKGVYEHLEEIDAMLLDT-SKNWALDRMPRLDLSLMRMACYELIYVDKTPTNVVINEAI 124

Query: 132 CIAHDFFYGDEPKFINAVLDKVSRKEE 158
            IA  +   D P F+N VLD+++++  
Sbjct: 125 EIAKRYGTKDTPAFLNGVLDRIAKRAR 151


>gi|317128425|ref|YP_004094707.1| NusB antitermination factor [Bacillus cellulosilyticus DSM 2522]
 gi|315473373|gb|ADU29976.1| NusB antitermination factor [Bacillus cellulosilyticus DSM 2522]
          Length = 132

 Score =  152 bits (384), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 39/143 (27%), Positives = 67/143 (46%), Gaps = 16/143 (11%)

Query: 15  RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74
            R +AR+ AVQ+LYQI++ G S  + I         +D               +   ++ 
Sbjct: 2   NRRVARVRAVQSLYQIEMTGVSPDQAIDTVLENGEISD--------------SFLSQLVE 47

Query: 75  GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134
           G ++    ID L+ S L + W+ SR+  +  +ILR    E+     +P+ V I+E + IA
Sbjct: 48  GTVEHLHEIDELLISAL-KNWALSRISRVDRAILRMATYEMKCLDDIPMNVSINEAIDIA 106

Query: 135 HDF-FYGDEPKFINAVLDKVSRK 156
             F    +  KF+N +L  ++ K
Sbjct: 107 KGFTGEEESGKFVNGILSNIATK 129


>gi|261856451|ref|YP_003263734.1| NusB antitermination factor [Halothiobacillus neapolitanus c2]
 gi|261836920|gb|ACX96687.1| NusB antitermination factor [Halothiobacillus neapolitanus c2]
          Length = 196

 Score =  152 bits (384), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 47/157 (29%), Positives = 71/157 (45%), Gaps = 15/157 (9%)

Query: 8   KDLKLSHRRGI--ARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVD 65
              K S ++    AR  AVQALYQ  +       + +++    F            L VD
Sbjct: 51  PPRKPSPKKRWRWARERAVQALYQQILNHTPVDLLDAQFMEDAF-----------MLKVD 99

Query: 66  LEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEV 125
           LE FR I+ GV   ++ +D   S  L      + +D I  +ILR G  ELI    +P  V
Sbjct: 100 LELFRRIVRGVSANEESLDEAYSPLLDR--PLAEIDPIEQAILRLGAFELIHTPEIPRAV 157

Query: 126 IISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRS 162
            I+E V +A  +   +  K+IN VLDK++ +  +   
Sbjct: 158 AINEAVEMAKLYGATESHKYINGVLDKLADRVRLNEP 194


>gi|254391339|ref|ZP_05006543.1| transcription antitermination protein NusB [Streptomyces
           clavuligerus ATCC 27064]
 gi|294811554|ref|ZP_06770197.1| Transcription antitermination protein NusB [Streptomyces
           clavuligerus ATCC 27064]
 gi|326440061|ref|ZP_08214795.1| transcription antitermination protein NusB [Streptomyces
           clavuligerus ATCC 27064]
 gi|197705030|gb|EDY50842.1| transcription antitermination protein NusB [Streptomyces
           clavuligerus ATCC 27064]
 gi|294324153|gb|EFG05796.1| Transcription antitermination protein NusB [Streptomyces
           clavuligerus ATCC 27064]
          Length = 142

 Score =  152 bits (384), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 35/138 (25%), Positives = 61/138 (44%), Gaps = 9/138 (6%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           R  AR  A Q L++ D    S   +++++  +      +  V         E+   ++ G
Sbjct: 4   RNKARKRAFQILFEADQRDVSVQTVLADWIRHSRTDTRQPPVS--------EYTMELVEG 55

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
                  ID LI++   E W   R+ ++  +ILR G  EL+     P  V+I E V +A 
Sbjct: 56  YAQYAPRIDELIATY-AEGWDLDRMPVVDRNILRLGTYELVWVDGTPDAVVIDEAVELAK 114

Query: 136 DFFYGDEPKFINAVLDKV 153
           +F   + P F+N +L + 
Sbjct: 115 EFSTDESPAFVNGLLGRF 132


>gi|167837551|ref|ZP_02464434.1| transcription antitermination protein NusB [Burkholderia
           thailandensis MSMB43]
          Length = 145

 Score =  152 bits (384), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 42/145 (28%), Positives = 60/145 (41%), Gaps = 14/145 (9%)

Query: 10  LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF 69
           +K S RR  +R  A Q LYQ  +   +  EI           D +L     Y   D    
Sbjct: 1   MKKSARR-QSRELATQGLYQWLLSNAAPGEI-----------DAQLRGALGYDKADKTLL 48

Query: 70  RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISE 129
             I+HGV+     +   IS  L       +L  +  ++L     EL      P  VII+E
Sbjct: 49  DTILHGVIREHATLAEAISPSLDR--PIDQLSPVERAVLLIATYELTHQIETPYRVIINE 106

Query: 130 YVCIAHDFFYGDEPKFINAVLDKVS 154
            V +A  F   D  K++N VLDK++
Sbjct: 107 AVELAKTFGGSDGYKYVNGVLDKLA 131


>gi|169828975|ref|YP_001699133.1| N utilization substance protein B-like protein [Lysinibacillus
           sphaericus C3-41]
 gi|238688177|sp|B1HRY0|NUSB_LYSSC RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|168993463|gb|ACA41003.1| N utilization substance protein B-like protein (NusB-like protein)
           [Lysinibacillus sphaericus C3-41]
          Length = 127

 Score =  152 bits (384), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 37/143 (25%), Positives = 62/143 (43%), Gaps = 17/143 (11%)

Query: 15  RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74
           +R  AR  A+Q L+Q+D    +  E +   +                      ++  I+ 
Sbjct: 2   KRHEAREKALQVLFQLDNTDLTVEEAMGHIK----------------GQPTNVFYEKIVT 45

Query: 75  GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134
           G  +  + ID  +   L EKWS +RL  I  ++LR  V EL+     P  V+++E + + 
Sbjct: 46  GTAEHLEEIDATLEQHL-EKWSLARLPKIERTVLRLAVYELLYMPETPKRVVLNEAIELC 104

Query: 135 HDFFYGDEPKFINAVLDKVSRKE 157
             F      KF+N VL K + +E
Sbjct: 105 KTFGDDSSSKFVNGVLSKFTEQE 127


>gi|126729172|ref|ZP_01744986.1| transcription antitermination factor NusB [Sagittula stellata E-37]
 gi|126710162|gb|EBA09214.1| transcription antitermination factor NusB [Sagittula stellata E-37]
          Length = 168

 Score =  151 bits (383), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 49/160 (30%), Positives = 82/160 (51%), Gaps = 3/160 (1%)

Query: 2   TIQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVY 61
                    +    R  +RL AVQALYQ++  G    ++  E+  +RF A  + D  +  
Sbjct: 9   PQPGKPSGNQKRKMRSASRLYAVQALYQMEQSGIPVDKVRREFLEFRFGAVDD-DDGTEM 67

Query: 62  LHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSV 121
           L  D+  F  +I   ++ +  +D +    L  KW  +R+D +L ++ RA   EL+     
Sbjct: 68  LDGDVSLFSHVIEEALNWQAKVDQMTDRALVAKWPIARIDPVLRALFRAAGAELV-ATDT 126

Query: 122 PVEVIISEYVCIAHDFF-YGDEPKFINAVLDKVSRKEEIK 160
           P +V+I EYV +A  F+  G E KF+NAVLD ++R+ + +
Sbjct: 127 PPKVVIVEYVDVAVAFYPDGKEAKFVNAVLDHMAREAKPE 166


>gi|196248859|ref|ZP_03147559.1| NusB antitermination factor [Geobacillus sp. G11MC16]
 gi|196211735|gb|EDY06494.1| NusB antitermination factor [Geobacillus sp. G11MC16]
          Length = 130

 Score =  151 bits (383), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 44/139 (31%), Positives = 62/139 (44%), Gaps = 16/139 (11%)

Query: 15  RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74
           +R  AR  A+QAL+QID+      E I            E+D           + R ++ 
Sbjct: 2   KRHEAREKALQALFQIDVGHIPPDEAIG-----NVTGSGEVD----------PFLRQLVF 46

Query: 75  GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134
           GV++ +  ID L+ S L EKW   R+  +   ILR    E+     VPV V + E V +A
Sbjct: 47  GVIEHRAEIDELLRSNL-EKWKLERVANVDRVILRMATYEMKYVDDVPVSVSLDEAVELA 105

Query: 135 HDFFYGDEPKFINAVLDKV 153
             F       F+N VL KV
Sbjct: 106 KKFGDWKSGSFVNGVLSKV 124


>gi|212638784|ref|YP_002315304.1| transcription antitermination protein NusB [Anoxybacillus
           flavithermus WK1]
 gi|212560264|gb|ACJ33319.1| Transcription termination factor [Anoxybacillus flavithermus WK1]
          Length = 152

 Score =  151 bits (383), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 41/139 (29%), Positives = 68/139 (48%), Gaps = 17/139 (12%)

Query: 15  RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74
           +R  AR  A+QAL+QID+ G    E ++         + E D           +  +++ 
Sbjct: 26  KRHTAREKALQALFQIDVGGIEPHEAVANVI------EEETD----------PFMEMLVF 69

Query: 75  GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134
           GV++ ++ ID L+   L EKW+  R+  +  SILR  V E+     +P+ V + E + +A
Sbjct: 70  GVVEHQKEIDDLLRQHL-EKWTLERVANVDRSILRMAVFEMKYMDDIPLSVSMDEAIELA 128

Query: 135 HDFFYGDEPKFINAVLDKV 153
             F      +FIN VL K+
Sbjct: 129 KVFGDEKSSRFINGVLAKI 147


>gi|260222860|emb|CBA32850.1| N utilization substance protein B homolog [Curvibacter putative
           symbiont of Hydra magnipapillata]
          Length = 177

 Score =  151 bits (383), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 38/159 (23%), Positives = 69/159 (43%), Gaps = 14/159 (8%)

Query: 1   MTIQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESV 60
           +T    +K    S+ R  AR  A+Q LYQ  +   +  +I           D      + 
Sbjct: 21  LTATGARKAASKSN-RTRAREFALQGLYQSLVGRNAVDDI-----------DPFTRDLAG 68

Query: 61  YLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHS 120
           +   D   F  ++HG +   + +D LI+  L      S +  I  +I+  G  E+  C  
Sbjct: 69  FSKADAVHFDALLHGCVAEAEALDALITPALDR--PMSEISPIEHAIMWIGAYEMKHCLD 126

Query: 121 VPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEI 159
           VP  V+++E + +A +F   D  K++N VL+ ++ +   
Sbjct: 127 VPWRVVLNECIELAKEFGGTDGHKYVNGVLNGIAPQLRA 165


>gi|148264233|ref|YP_001230939.1| NusB antitermination factor [Geobacter uraniireducens Rf4]
 gi|189035890|sp|A5G3J8|NUSB_GEOUR RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|146397733|gb|ABQ26366.1| NusB antitermination factor [Geobacter uraniireducens Rf4]
          Length = 145

 Score =  151 bits (383), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 40/141 (28%), Positives = 66/141 (46%), Gaps = 4/141 (2%)

Query: 14  HRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVII 73
             R   R  A+QALY  D+     T ++       F   +E  V++        +   ++
Sbjct: 2   SSRREGRELALQALYSSDVEVMDGTTVLKRIME-NFGDGSEPAVDA--HSRSFSFAAELV 58

Query: 74  HGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCI 133
           +GV+  +  ID  I    ++ WS SR+  +  +ILR  V EL     +P  V I+E + +
Sbjct: 59  NGVVANRAAIDQRIEEK-SKNWSISRMARVDLNILRLAVFELFYRPDIPKNVTINEAIEV 117

Query: 134 AHDFFYGDEPKFINAVLDKVS 154
           A  F   D P FIN +LD+++
Sbjct: 118 AKKFGADDSPAFINGILDEIA 138


>gi|27904889|ref|NP_778015.1| transcription antitermination protein NusB [Buchnera aphidicola
           str. Bp (Baizongia pistaciae)]
 gi|29427633|sp|P59452|NUSB_BUCBP RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|27904287|gb|AAO27120.1| N utilization substance protein B [Buchnera aphidicola str. Bp
           (Baizongia pistaciae)]
          Length = 144

 Score =  151 bits (383), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 44/156 (28%), Positives = 71/156 (45%), Gaps = 14/156 (8%)

Query: 10  LKLSHR-RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEW 68
           +K   + R  AR  AVQALY   I      ++I+ ++  +   +           +D  +
Sbjct: 1   MKSKTKTRRKAREYAVQALYSWQISKNDIYDVINHFKKNKTINE-----------IDQIY 49

Query: 69  FRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIIS 128
           F  +I G+    +++D L+   L+   +   L  I  +ILR    EL + + +P +V I+
Sbjct: 50  FYELIIGITKNLKYLDELMRPYLSR--TIQELGQIEKAILRISFFELDKRYDIPFKVTIN 107

Query: 129 EYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRSGC 164
           E + +A  F   D  KFIN VLDK S K     S  
Sbjct: 108 ESIELAKLFGAKDSHKFINGVLDKASLKLRKNNSNK 143


>gi|302036739|ref|YP_003797061.1| transcription antitermination factor NusB [Candidatus Nitrospira
           defluvii]
 gi|190343154|gb|ACE75542.1| transcription antitermination protein [Candidatus Nitrospira
           defluvii]
 gi|300604803|emb|CBK41135.1| Transcription antitermination factor NusB [Candidatus Nitrospira
           defluvii]
          Length = 157

 Score =  151 bits (383), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 41/140 (29%), Positives = 66/140 (47%), Gaps = 13/140 (9%)

Query: 14  HRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVII 73
             R  AR  AVQ L+Q DI G +   +   +  Y    +  +            +   ++
Sbjct: 2   ASRHQARERAVQILFQYDIHGQAGPWLDDFWIQYPLAEELRV------------FAERLV 49

Query: 74  HGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCI 133
            GV   K+ +D LI +  T  W  SR+ +I  +ILR G  EL+    VP +V ++E + +
Sbjct: 50  AGVRANKKELDALIGTYAT-NWKVSRMPIIDRNILRMGCFELLHVPEVPAKVTLNEAIEL 108

Query: 134 AHDFFYGDEPKFINAVLDKV 153
           A  F   +  KF+N +LDK+
Sbjct: 109 AKSFGDEEASKFVNGILDKL 128


>gi|223939373|ref|ZP_03631252.1| NusB antitermination factor [bacterium Ellin514]
 gi|223891977|gb|EEF58459.1| NusB antitermination factor [bacterium Ellin514]
          Length = 185

 Score =  151 bits (383), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 42/178 (23%), Positives = 74/178 (41%), Gaps = 17/178 (9%)

Query: 2   TIQDNKKDLKLSHRRGIARLAAVQALYQIDIIG-CSTTEIISEYETYR------------ 48
           + QD  +  ++  +R  AR  AVQ L+Q D+       E ++ +   +            
Sbjct: 9   SQQDFIRHHRVMGKRREARERAVQFLFQHDLNPPEKLEEALNHFWDSQRPAALAEDKGGA 68

Query: 49  -FCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSI 107
            +    EL   +        +   +I G ++ +   D  I     E W   R+  +  +I
Sbjct: 69  TWGQKVELPAPTAEEAAVRIFADPLIRGALEHRDEADAQIKKY-AENWDLHRIAAVDRNI 127

Query: 108 LRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRSGCV 165
           LR  + E++    +P  V I+E V IA  F   +  KF+N +LDK+  K E+ R   +
Sbjct: 128 LRLAIFEMLHREDIPPVVSINEAVDIAKKFSTYESGKFVNGILDKI--KGELMRPARI 183


>gi|29833402|ref|NP_828036.1| transcription antitermination protein NusB [Streptomyces
           avermitilis MA-4680]
 gi|39931877|sp|Q827R4|NUSB_STRAW RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|29610525|dbj|BAC74571.1| putative transcription termination protein [Streptomyces
           avermitilis MA-4680]
          Length = 144

 Score =  151 bits (382), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 38/147 (25%), Positives = 67/147 (45%), Gaps = 12/147 (8%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           R  AR  A Q L++ D  G     +++++  +      +  V         E+   ++ G
Sbjct: 4   RNTARKRAFQILFEGDQRGVDVLTVLADWIRHSRTDTRQPPVS--------EYTMQLVEG 55

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
              +   ID LIS      W+  R+ ++  +ILR G  EL+     P  V++ E V +A 
Sbjct: 56  YAKKVNRIDELISQYAV-GWTLDRMPVVDRNILRLGTYELLWVDETPDAVVLDEAVQLAK 114

Query: 136 DFFYGDEPKFINAVLDKVSRKEEIKRS 162
           +F   D P F+N +L ++   +E+K S
Sbjct: 115 EFSTDDSPAFVNGLLGRL---KELKPS 138


>gi|124268133|ref|YP_001022137.1| putative N utilization substance B [Methylibium petroleiphilum PM1]
 gi|124260908|gb|ABM95902.1| putative N utilization substance B (transcriptional
           antiterminator)(l factor) transcription regulator
           protein [Methylibium petroleiphilum PM1]
          Length = 176

 Score =  151 bits (382), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 39/151 (25%), Positives = 62/151 (41%), Gaps = 14/151 (9%)

Query: 4   QDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLH 63
              +K  + S RR  +R  A+Q LYQ  + G     I +                  +  
Sbjct: 22  PGGRKPAQKSSRRR-SREFALQGLYQWLVSGSEAVVIEAHMREL-----------DGFKQ 69

Query: 64  VDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPV 123
            D   F  ++HG +     +D +++  +  K +   L  I   +L  G  EL  C  +P 
Sbjct: 70  ADAAHFDALLHGCVAEAAALDAVLARHVDRKTT--ELSPIEHGVLMIGAYELKHCIDIPY 127

Query: 124 EVIISEYVCIAHDFFYGDEPKFINAVLDKVS 154
            V I+E V +A  F   D  K++N VLDK +
Sbjct: 128 RVAINEAVELAKSFGGTDGHKYVNGVLDKAA 158


>gi|78046359|ref|YP_362534.1| transcription antitermination protein NusB [Xanthomonas campestris
           pv. vesicatoria str. 85-10]
 gi|325928457|ref|ZP_08189648.1| transcription antitermination factor NusB [Xanthomonas perforans
           91-118]
 gi|119390847|sp|Q3BXH9|NUSB_XANC5 RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|78034789|emb|CAJ22434.1| transcription termination factor NusB [Xanthomonas campestris pv.
           vesicatoria str. 85-10]
 gi|325541174|gb|EGD12725.1| transcription antitermination factor NusB [Xanthomonas perforans
           91-118]
          Length = 162

 Score =  151 bits (382), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 38/146 (26%), Positives = 64/146 (43%), Gaps = 16/146 (10%)

Query: 25  QALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHID 84
           QA+Y   I G    ++I+++             E  +   DL +F  ++ GV+  +  +D
Sbjct: 30  QAVYAWQISGGFAKQVIAQFAH-----------EQAHEVADLAYFENLVEGVLSNRAELD 78

Query: 85  LLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPK 144
             ++  L    S   +D I  ++LR    EL+    VP  V+I+E +  A  F       
Sbjct: 79  TALTPYLDR--SVEEVDAIERAVLRLAAYELLYRQDVPYRVVINEAIETAKRFGSEHGHT 136

Query: 145 FINAVLDKVS---RKEEIKRSGCVSA 167
           ++N VLD+ +   RK E   SG   A
Sbjct: 137 YVNGVLDRAAVEWRKVESGASGASGA 162


>gi|198282617|ref|YP_002218938.1| NusB antitermination factor [Acidithiobacillus ferrooxidans ATCC
           53993]
 gi|218667110|ref|YP_002424808.1| transcription antitermination factor NusB [Acidithiobacillus
           ferrooxidans ATCC 23270]
 gi|198247138|gb|ACH82731.1| NusB antitermination factor [Acidithiobacillus ferrooxidans ATCC
           53993]
 gi|218519323|gb|ACK79909.1| transcription antitermination factor NusB [Acidithiobacillus
           ferrooxidans ATCC 23270]
          Length = 147

 Score =  151 bits (382), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 41/147 (27%), Positives = 70/147 (47%), Gaps = 11/147 (7%)

Query: 10  LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF 69
           +K+S RR +AR AAVQALYQ  +      EI  ++ +                  D+ +F
Sbjct: 1   MKIS-RRRLARQAAVQALYQWQMNPGHCAEIELQFTS----------DPERLQGADVAFF 49

Query: 70  RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISE 129
           + +  GV      +D  I+  + ++     +  +  +ILR    EL +    P  VII+E
Sbjct: 50  KSLWQGVCAAISELDPAIAEEVQDRRWADEVSEVERAILRLAACELRDYPQTPYRVIINE 109

Query: 130 YVCIAHDFFYGDEPKFINAVLDKVSRK 156
            + +  DF      +F+NAVLDK++++
Sbjct: 110 AIELDKDFGGEQGHRFVNAVLDKLAQR 136


>gi|258654403|ref|YP_003203559.1| NusB antitermination factor [Nakamurella multipartita DSM 44233]
 gi|258557628|gb|ACV80570.1| NusB antitermination factor [Nakamurella multipartita DSM 44233]
          Length = 144

 Score =  151 bits (382), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 31/139 (22%), Positives = 61/139 (43%), Gaps = 7/139 (5%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           R  +R  A+  L+  +  G     ++SE        D              ++   ++ G
Sbjct: 4   RSKSRKRALDVLFAAEARGVDPLVVLSERMEEPTGPDRHSWTPIG------DYAEGLVRG 57

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
            ++ +  +D L++   +  W+  R+  +  +ILR  V EL+    VP  V+++E V  A 
Sbjct: 58  FVEHQDRVDTLLAEH-SRGWTVDRMPAVDRAILRIAVYELLYSTEVPPAVVVNEAVDSAK 116

Query: 136 DFFYGDEPKFINAVLDKVS 154
                D P+F+N VL +++
Sbjct: 117 ILSTDDSPRFVNGVLGQIA 135


>gi|77919050|ref|YP_356865.1| transcription antitermination factor NusB [Pelobacter carbinolicus
           DSM 2380]
 gi|119390793|sp|Q3A4L2|NUSB_PELCD RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|77545133|gb|ABA88695.1| NusB antitermination factor [Pelobacter carbinolicus DSM 2380]
          Length = 156

 Score =  151 bits (382), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 42/147 (28%), Positives = 66/147 (44%), Gaps = 5/147 (3%)

Query: 13  SHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCAD----TELDVESVYLHVDLEW 68
           S  R   R  A++ +Y  D  G     + + +  +RF  D       D          E+
Sbjct: 3   SGMRRTGRELAIKIIYSFDGTGSVEALLATFWSNFRFRDDVLGEPLEDSSQAVAEPVREF 62

Query: 69  FRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIIS 128
              ++ GV +  + ID LI    +  WS  R+  +  +ILR    EL+    VPV VII+
Sbjct: 63  AEDLVRGVAENLEKIDGLIGEF-STNWSLERMARVDLAILRMATYELLGHLDVPVSVIIN 121

Query: 129 EYVCIAHDFFYGDEPKFINAVLDKVSR 155
           E V I   +   + P F+N +LD++SR
Sbjct: 122 EAVEIGKRYGTKETPSFVNGILDRISR 148


>gi|256827876|ref|YP_003156604.1| NusB antitermination factor [Desulfomicrobium baculatum DSM 4028]
 gi|256577052|gb|ACU88188.1| NusB antitermination factor [Desulfomicrobium baculatum DSM 4028]
          Length = 154

 Score =  151 bits (382), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 32/151 (21%), Positives = 71/151 (47%), Gaps = 9/151 (5%)

Query: 12  LSHRRGIARLAAVQALYQIDIIGC-STTEIISEYETYRFCADTELDVESVYLHVDLEWFR 70
           ++H R   R  A Q +Y +      S   +I  ++ +    + +++ +         +  
Sbjct: 1   MTHNRRHQRRFAFQVIYSLVFGQKMSKDSLIKSFDNFWTEEEFDMERQD-------SYAW 53

Query: 71  VIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEY 130
            ++ GV D    ID +I+   ++ W  +R+  +  +ILR  + E++ C  +P++V ++E 
Sbjct: 54  TLVEGVFDNYDSIDEIITQH-SQHWKLNRIAKVELTILRLSLFEMLFCPDIPIKVAMNEA 112

Query: 131 VCIAHDFFYGDEPKFINAVLDKVSRKEEIKR 161
           + +A DF   +   F+N VLD  ++  +   
Sbjct: 113 IELAKDFGDDNSKTFVNGVLDAAAKGAQRNE 143


>gi|319892510|ref|YP_004149385.1| Transcription termination protein NusB [Staphylococcus
           pseudintermedius HKU10-03]
 gi|317162206|gb|ADV05749.1| Transcription termination protein NusB [Staphylococcus
           pseudintermedius HKU10-03]
 gi|323464388|gb|ADX76541.1| transcription antitermination factor NusB [Staphylococcus
           pseudintermedius ED99]
          Length = 130

 Score =  151 bits (381), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 42/141 (29%), Positives = 65/141 (46%), Gaps = 13/141 (9%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           R  AR  A Q L+Q+++     T  I E  ++         ++  Y  +D ++ + ++ G
Sbjct: 3   RKQARSQAFQTLFQLEMKNTELT--IDEAISF---------IKEDYPDLDFDFIKWLVSG 51

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
           V D +  +D  IS  L   W+ +RL      ILR    E+      P +VII+E V +A 
Sbjct: 52  VKDHQHVLDETISPHLN-GWTIARLLKTDRIILRMATFEM-NHSDTPEKVIINEAVELAK 109

Query: 136 DFFYGDEPKFINAVLDKVSRK 156
            F   D  KFIN VL  + R 
Sbjct: 110 QFSDDDHYKFINGVLSHIKRN 130


>gi|332977564|gb|EGK14334.1| N utilization substance protein B [Desmospora sp. 8437]
          Length = 148

 Score =  151 bits (381), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 38/152 (25%), Positives = 60/152 (39%), Gaps = 9/152 (5%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           R   R  A+Q LYQ +I               R        +          +F  ++  
Sbjct: 3   RRTVREKALQTLYQNEINPDGAD---------RSMKKEARSLHDEAGEEASAFFLRLVRT 53

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
           V+     +D +I   L + W+ SRL  +  SILR  V EL+    +P    ++E V +A 
Sbjct: 54  VIRNMPRLDPVIQGYLKQDWTLSRLSPVDRSILRMAVCELLYEEEIPEGASLNEAVELAK 113

Query: 136 DFFYGDEPKFINAVLDKVSRKEEIKRSGCVSA 167
            F   +  +FIN VL  + +  +  R   VS 
Sbjct: 114 TFSTEESARFINGVLGSMVKNLDEVRKSAVSG 145


>gi|322420503|ref|YP_004199726.1| NusB antitermination factor [Geobacter sp. M18]
 gi|320126890|gb|ADW14450.1| NusB antitermination factor [Geobacter sp. M18]
          Length = 145

 Score =  151 bits (381), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 37/140 (26%), Positives = 67/140 (47%), Gaps = 6/140 (4%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISE-YETYRFCADTELDVESVYLHVDLEWFRVIIH 74
           R   R  A+QALY  D++       +   +E++    D  L   S        +   +++
Sbjct: 4   RREGRELALQALYSKDLVLQDANTTLKRIFESFGEGEDPTLSANSKAY----AFASELVN 59

Query: 75  GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134
           GV+   Q ID  I+   ++ WS +R+  +  +ILR  V EL+    +P  V ++E + +A
Sbjct: 60  GVVTHLQEIDGRIAEK-SKHWSMARMARVDLNILRLAVFELLYRPDIPKNVTMNEAIEVA 118

Query: 135 HDFFYGDEPKFINAVLDKVS 154
             F   D   F+N +LD+++
Sbjct: 119 KKFGADDSASFVNGILDEIA 138


>gi|23014664|ref|ZP_00054469.1| COG0781: Transcription termination factor [Magnetospirillum
           magnetotacticum MS-1]
          Length = 156

 Score =  151 bits (381), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 46/153 (30%), Positives = 73/153 (47%), Gaps = 5/153 (3%)

Query: 14  HRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVII 73
            +R  ARLAAVQ LYQ+++ G      + + +  R       + +      D      ++
Sbjct: 9   AKRSAARLAAVQVLYQMEMTGTDCERALQDAKDRRAA-----EPKGRMADPDSSLLNQVV 63

Query: 74  HGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCI 133
            GV  + + ID  +   L+  W+  RL+ +L +I+R G  EL      P  V ISE+V +
Sbjct: 64  RGVSAQLEDIDRHVGGALSGDWTVERLEAVLRAIIRGGAWELSARPQTPARVCISEWVDV 123

Query: 134 AHDFFYGDEPKFINAVLDKVSRKEEIKRSGCVS 166
           AH F+ G EP  +NAVLD +++       G   
Sbjct: 124 AHAFYSGPEPGLVNAVLDHLAQTLRGGEMGKGG 156


>gi|325833527|ref|ZP_08165976.1| transcription antitermination factor NusB [Eggerthella sp. HGA1]
 gi|325485451|gb|EGC87920.1| transcription antitermination factor NusB [Eggerthella sp. HGA1]
          Length = 200

 Score =  151 bits (381), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 44/159 (27%), Positives = 71/159 (44%), Gaps = 14/159 (8%)

Query: 12  LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71
             H R  AR AA+Q LY  +I   S   I             E D          E+  +
Sbjct: 4   KRHERTSARRAALQVLYTSEITDESPAAIA------------EGDRRLEEDGPLPEYALM 51

Query: 72  IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
           ++ GV   +  ID  ++   +E WS +R+ ++  SILR    E++    VP  V I+E V
Sbjct: 52  LVRGVESHRIAIDNHLA-ATSENWSLARMPIVDRSILRLATFEMMYIDDVPTSVTINEAV 110

Query: 132 CIAHDFFYGD-EPKFINAVLDKVSRKEEIKRSGCVSAIT 169
            +A DF   D   +F+N +L ++++  E + S    A +
Sbjct: 111 ELAKDFGGEDESHRFVNGILGRIAKMLEGEESQEADAPS 149


>gi|257456352|ref|ZP_05621549.1| transcription antitermination factor NusB [Treponema vincentii ATCC
           35580]
 gi|257446438|gb|EEV21484.1| transcription antitermination factor NusB [Treponema vincentii ATCC
           35580]
          Length = 147

 Score =  151 bits (381), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 41/145 (28%), Positives = 67/145 (46%), Gaps = 9/145 (6%)

Query: 12  LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71
           ++  R   R+ A QALY  D    S  +++      R   +            D  + ++
Sbjct: 1   MAIGRRRGRILAFQALYAWDAGSLSPDDLLPFPWVERTGKE--------LHDEDFLFSQL 52

Query: 72  IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
           +  G ++    ID LI+  L E W F+RL ++  +ILR G   L+        ++I+E V
Sbjct: 53  LFLGAVEHIDEIDGLIAKNL-ENWDFNRLKLVDKAILRLGTYSLLFQQDTDPRIVINEAV 111

Query: 132 CIAHDFFYGDEPKFINAVLDKVSRK 156
            IA  +   D  KF+NAVLD + R+
Sbjct: 112 TIARIYGTDDSFKFVNAVLDSIKRE 136


>gi|87121731|ref|ZP_01077618.1| NusB protein [Marinomonas sp. MED121]
 gi|86162982|gb|EAQ64260.1| NusB protein [Marinomonas sp. MED121]
          Length = 167

 Score =  151 bits (381), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 42/150 (28%), Positives = 68/150 (45%), Gaps = 13/150 (8%)

Query: 12  LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71
            S  R  AR  A+QA+YQ  +      EI +++            V+      D  +FR 
Sbjct: 23  RSQLRSAARSFALQAVYQWQMNHAPVNEIEAQFA-----------VDHDLGTCDKAYFRE 71

Query: 72  IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
           ++ GV  + + +D L    L      + LD I  + LR G  EL E   VP  V I+E V
Sbjct: 72  LLQGVTAKAKSLDDLFEELLDR--PLAELDPIELATLRIGSYELAERLDVPYRVAINESV 129

Query: 132 CIAHDFFYGDEPKFINAVLDKVSRKEEIKR 161
            +A  F   +  K++N +LDK++++   + 
Sbjct: 130 ELAKSFGASESHKYVNGILDKLAQRVRREE 159


>gi|239932425|ref|ZP_04689378.1| transcription antitermination protein NusB [Streptomyces ghanaensis
           ATCC 14672]
 gi|291440791|ref|ZP_06580181.1| transcription antitermination protein NusB [Streptomyces ghanaensis
           ATCC 14672]
 gi|291343686|gb|EFE70642.1| transcription antitermination protein NusB [Streptomyces ghanaensis
           ATCC 14672]
          Length = 144

 Score =  151 bits (381), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 39/147 (26%), Positives = 69/147 (46%), Gaps = 12/147 (8%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           R  AR  A Q L++ D  G     +++++  +      +  V         E+   ++ G
Sbjct: 4   RNTARKRAFQILFEGDQRGADVLTVLADWIRHSRTDTRQPPVS--------EYTMQLVEG 55

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
             +  Q ID LI+   +  W+  R+ ++  SILR G  EL+     P  V++ E V +A 
Sbjct: 56  YAEHAQRIDGLIAQY-SVGWTLDRMPVVDRSILRLGAYELLWVDETPDAVVLDEMVQLAK 114

Query: 136 DFFYGDEPKFINAVLDKVSRKEEIKRS 162
           +F   + P FIN +L ++   +E+K S
Sbjct: 115 EFSTDESPSFINGLLGRL---KELKPS 138


>gi|296161946|ref|ZP_06844746.1| NusB antitermination factor [Burkholderia sp. Ch1-1]
 gi|295887822|gb|EFG67640.1| NusB antitermination factor [Burkholderia sp. Ch1-1]
          Length = 144

 Score =  150 bits (380), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 41/153 (26%), Positives = 65/153 (42%), Gaps = 15/153 (9%)

Query: 10  LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF 69
           +K + RR   R  A Q LYQ  + G    EI           D +L     +   D E  
Sbjct: 1   MKSARRRS--RELATQGLYQWLLSGSPGGEI-----------DAQLRGAQGFDKADHEHL 47

Query: 70  RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISE 129
             ++HGV+   + +   I  CL       +L  +  ++L     EL     +P  V+I+E
Sbjct: 48  NALLHGVIRDSEALSADIVPCLDR--PIEQLSPVERAVLLVAAFELKNHVDIPYRVVINE 105

Query: 130 YVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRS 162
            V +A  F   D  K++N VLDK+S +  +  +
Sbjct: 106 AVELAKTFGGADGYKYVNGVLDKLSAQLRVDET 138


>gi|299067743|emb|CBJ38952.1| antitermination factor (N utilization substance B) (transcriptional
           antiterminator) [Ralstonia solanacearum CMR15]
          Length = 155

 Score =  150 bits (380), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 35/163 (21%), Positives = 65/163 (39%), Gaps = 15/163 (9%)

Query: 1   MTIQDNKKDLKLSHR--RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVE 58
           MT  ++    K   +  R  AR  A+Q LYQ  +       + +                
Sbjct: 1   MTQDNSPAKPKAPPKSARRRARELALQGLYQWLLNRNDPGVVEAHLHD-----------A 49

Query: 59  SVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIEC 118
             +   D   F  ++HG +  +  +    +  L      + L  +  + L  G  EL+ C
Sbjct: 50  QGFNKADRAHFDALLHGAIREEATLTESFTPFLDR--PVAELSPVERAALLVGAYELVHC 107

Query: 119 HSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKR 161
             +P +V+I+E V +A  F   +  K++N VLDK++ +   + 
Sbjct: 108 VDIPYKVVINEAVELAKTFGGVEGYKYVNGVLDKLAAQVRAEE 150


>gi|240170738|ref|ZP_04749397.1| transcription antitermination protein NusB [Mycobacterium kansasii
           ATCC 12478]
          Length = 174

 Score =  150 bits (380), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 41/146 (28%), Positives = 63/146 (43%), Gaps = 9/146 (6%)

Query: 8   KDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLE 67
           K  K    R  AR  AV  L++ +  G S  E++             L      +     
Sbjct: 5   KPGKPVKGRHQARKRAVDVLFEAEARGMSPLEVVESRTA--------LAAAKPEVAPLHP 56

Query: 68  WFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVII 127
           +   +  GV +   HID LI++ L + W+  RL  +  +ILR  V EL+    VP  V +
Sbjct: 57  YTAAVARGVSEDAAHIDDLIAAHL-QGWTLDRLPAVDRAILRVSVWELLHADDVPEPVAV 115

Query: 128 SEYVCIAHDFFYGDEPKFINAVLDKV 153
            E V +A +    + P F+N VL +V
Sbjct: 116 DEAVELAKELSTDESPGFVNGVLGQV 141


>gi|167586433|ref|ZP_02378821.1| NusB antitermination factor [Burkholderia ubonensis Bu]
          Length = 145

 Score =  150 bits (380), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 45/159 (28%), Positives = 68/159 (42%), Gaps = 19/159 (11%)

Query: 10  LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF 69
           +K S RR  +R  A Q LYQ  +   S+ EI           D +L     Y   D +  
Sbjct: 1   MKKSARR-QSRELATQGLYQWLLSNASSGEI-----------DAQLRGALGYDKADKDLL 48

Query: 70  RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISE 129
             I+HGV+     +   ++ CL       +L  I  ++L     EL      P  VII+E
Sbjct: 49  DAILHGVIREHATLAEALTPCLDR--PIDQLSPIERAVLLIATFELTHHVETPYRVIINE 106

Query: 130 YVCIAHDFFYGDEPKFINAVLDKVSRKE-----EIKRSG 163
            V +   F   D  K++N VLDK++ K      + +R+G
Sbjct: 107 AVELTKTFGGSDGYKYVNGVLDKLAAKLRPAETQARRNG 145


>gi|317490198|ref|ZP_07948686.1| transcription antitermination factor NusB [Eggerthella sp.
           1_3_56FAA]
 gi|316910692|gb|EFV32313.1| transcription antitermination factor NusB [Eggerthella sp.
           1_3_56FAA]
          Length = 200

 Score =  150 bits (380), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 43/159 (27%), Positives = 70/159 (44%), Gaps = 14/159 (8%)

Query: 12  LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71
             H R  AR AA+Q LY  +I   S   I             E D          E+  +
Sbjct: 4   KRHERTSARRAALQVLYTSEITDESPAAIA------------EGDRRLEEDGPLPEYALM 51

Query: 72  IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
           ++ GV   +  ID  ++   +E WS +R+ ++  SILR    E++    VP  V I+E V
Sbjct: 52  LVRGVESHRIAIDNHLA-ATSENWSLARMPIVDRSILRLATFEMMYIDDVPTSVTINEAV 110

Query: 132 CIAHDFFYGD-EPKFINAVLDKVSRKEEIKRSGCVSAIT 169
            +A DF   D   +F+N +L ++++  E +      A +
Sbjct: 111 ELAKDFGGEDESHRFVNGILGRIAKMLEGEEGQEADAPS 149


>gi|256826969|ref|YP_003150928.1| transcription antitermination factor NusB [Cryptobacterium curtum
           DSM 15641]
 gi|256583112|gb|ACU94246.1| transcription antitermination factor NusB [Cryptobacterium curtum
           DSM 15641]
          Length = 162

 Score =  150 bits (380), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 41/150 (27%), Positives = 74/150 (49%), Gaps = 14/150 (9%)

Query: 10  LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF 69
           +   H R +AR  AVQ LY+ +I     +EI+          D   D  ++       + 
Sbjct: 1   MAKRHERTLARRMAVQVLYEGEITDTLASEIV-------LRPDAVPDGGAL-----PAYA 48

Query: 70  RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISE 129
             ++ GV   +  ID  I++  +E WS  R+ ++  +I+R  V E+  C  VP+ V I+E
Sbjct: 49  VSLVEGVCAHRVAIDNKIAAA-SENWSVGRMPLVDRAIMRLAVFEMTHCDDVPLSVSINE 107

Query: 130 YVCIAHDFFY-GDEPKFINAVLDKVSRKEE 158
            V +A +F    D  +F+N +L +++R++ 
Sbjct: 108 AVELAKEFGGADDSARFVNGILGRIARQDN 137


>gi|196232646|ref|ZP_03131498.1| NusB antitermination factor [Chthoniobacter flavus Ellin428]
 gi|196223408|gb|EDY17926.1| NusB antitermination factor [Chthoniobacter flavus Ellin428]
          Length = 151

 Score =  150 bits (380), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 40/150 (26%), Positives = 64/150 (42%), Gaps = 9/150 (6%)

Query: 15  RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74
           +R   R AAVQ LYQID+ G +           +F        ++        +   +  
Sbjct: 3   KRREGREAAVQYLYQIDLSGETPVNAE------QFWMLRSGPGKAPVAPKTRIFAEQLAL 56

Query: 75  GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134
           GV    + ID  I    T  +   RL ++  +ILR  + EL+    V   +II+E + +A
Sbjct: 57  GVRKHLEEIDGYIKKY-TANYELDRLAVVDRNILRVAIYELLHSPDVAPVIIINEAIEVA 115

Query: 135 HDFFYGDEPKFINAVLDKVSRKEEIKRSGC 164
             F       F+N +LD++  KEE+ R   
Sbjct: 116 KKFGTDKSGGFVNGILDRI--KEEVGRPAR 143


>gi|205374079|ref|ZP_03226879.1| transcription antitermination protein NusB [Bacillus coahuilensis
           m4-4]
          Length = 129

 Score =  150 bits (380), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 46/139 (33%), Positives = 68/139 (48%), Gaps = 16/139 (11%)

Query: 15  RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74
           +R  AR  A+QAL+Q+D+   S  E ++         ++E+D          ++   ++ 
Sbjct: 2   KRHTAREKALQALFQMDMSQLSGQEALT-----NVTEESEMD----------DYLSKLVL 46

Query: 75  GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134
                 + ID  I   L EKWSF RL  +  SILR  V E++    VP +V I+E + +A
Sbjct: 47  QTETNLEVIDQKIRENL-EKWSFERLAKVDRSILRLTVCEMMFIEDVPNKVAINEAIELA 105

Query: 135 HDFFYGDEPKFINAVLDKV 153
             F      KFINAVL KV
Sbjct: 106 KTFGDDQSSKFINAVLSKV 124


>gi|69244729|ref|ZP_00602993.1| Antitermination protein NusB [Enterococcus faecium DO]
 gi|227550442|ref|ZP_03980491.1| transcription antitermination protein NusB [Enterococcus faecium
           TX1330]
 gi|257879351|ref|ZP_05659004.1| antitermination protein NusB [Enterococcus faecium 1,230,933]
 gi|257881783|ref|ZP_05661436.1| antitermination protein NusB [Enterococcus faecium 1,231,502]
 gi|257888470|ref|ZP_05668123.1| antitermination protein NusB [Enterococcus faecium 1,141,733]
 gi|257890177|ref|ZP_05669830.1| antitermination protein NusB [Enterococcus faecium 1,231,410]
 gi|257897155|ref|ZP_05676808.1| antitermination protein NusB [Enterococcus faecium Com12]
 gi|257899153|ref|ZP_05678806.1| antitermination protein NusB [Enterococcus faecium Com15]
 gi|258615757|ref|ZP_05713527.1| transcription antitermination protein NusB [Enterococcus faecium
           DO]
 gi|260558793|ref|ZP_05830982.1| antitermination protein NusB [Enterococcus faecium C68]
 gi|261206503|ref|ZP_05921203.1| antitermination protein NusB [Enterococcus faecium TC 6]
 gi|289565413|ref|ZP_06445862.1| transcription antitermination factor NusB [Enterococcus faecium
           D344SRF]
 gi|293377380|ref|ZP_06623584.1| transcription antitermination factor NusB [Enterococcus faecium
           PC4.1]
 gi|293553169|ref|ZP_06673806.1| transcription antitermination factor NusB [Enterococcus faecium
           E1039]
 gi|293560490|ref|ZP_06676982.1| transcription antitermination factor NusB [Enterococcus faecium
           E1162]
 gi|293568316|ref|ZP_06679640.1| transcription antitermination factor NusB [Enterococcus faecium
           E1071]
 gi|293571749|ref|ZP_06682768.1| transcription antitermination factor NusB [Enterococcus faecium
           E980]
 gi|294614729|ref|ZP_06694631.1| transcription antitermination factor NusB [Enterococcus faecium
           E1636]
 gi|294618975|ref|ZP_06698470.1| transcription antitermination factor NusB [Enterococcus faecium
           E1679]
 gi|294621587|ref|ZP_06700752.1| transcription antitermination factor NusB [Enterococcus faecium
           U0317]
 gi|314937887|ref|ZP_07845203.1| transcription antitermination factor NusB [Enterococcus faecium
           TX0133a04]
 gi|314941378|ref|ZP_07848271.1| transcription antitermination factor NusB [Enterococcus faecium
           TX0133C]
 gi|314950137|ref|ZP_07853423.1| transcription antitermination factor NusB [Enterococcus faecium
           TX0082]
 gi|314951322|ref|ZP_07854376.1| transcription antitermination factor NusB [Enterococcus faecium
           TX0133A]
 gi|314992847|ref|ZP_07858248.1| transcription antitermination factor NusB [Enterococcus faecium
           TX0133B]
 gi|314998051|ref|ZP_07862939.1| transcription antitermination factor NusB [Enterococcus faecium
           TX0133a01]
 gi|68196320|gb|EAN10749.1| Antitermination protein NusB [Enterococcus faecium DO]
 gi|227180343|gb|EEI61315.1| transcription antitermination protein NusB [Enterococcus faecium
           TX1330]
 gi|257813579|gb|EEV42337.1| antitermination protein NusB [Enterococcus faecium 1,230,933]
 gi|257817441|gb|EEV44769.1| antitermination protein NusB [Enterococcus faecium 1,231,502]
 gi|257824524|gb|EEV51456.1| antitermination protein NusB [Enterococcus faecium 1,141,733]
 gi|257826537|gb|EEV53163.1| antitermination protein NusB [Enterococcus faecium 1,231,410]
 gi|257833720|gb|EEV60141.1| antitermination protein NusB [Enterococcus faecium Com12]
 gi|257837065|gb|EEV62139.1| antitermination protein NusB [Enterococcus faecium Com15]
 gi|260075252|gb|EEW63565.1| antitermination protein NusB [Enterococcus faecium C68]
 gi|260079213|gb|EEW66904.1| antitermination protein NusB [Enterococcus faecium TC 6]
 gi|289162742|gb|EFD10593.1| transcription antitermination factor NusB [Enterococcus faecium
           D344SRF]
 gi|291589028|gb|EFF20852.1| transcription antitermination factor NusB [Enterococcus faecium
           E1071]
 gi|291592467|gb|EFF24074.1| transcription antitermination factor NusB [Enterococcus faecium
           E1636]
 gi|291594636|gb|EFF26018.1| transcription antitermination factor NusB [Enterococcus faecium
           E1679]
 gi|291598752|gb|EFF29804.1| transcription antitermination factor NusB [Enterococcus faecium
           U0317]
 gi|291602579|gb|EFF32794.1| transcription antitermination factor NusB [Enterococcus faecium
           E1039]
 gi|291605638|gb|EFF35080.1| transcription antitermination factor NusB [Enterococcus faecium
           E1162]
 gi|291608206|gb|EFF37509.1| transcription antitermination factor NusB [Enterococcus faecium
           E980]
 gi|292644072|gb|EFF62178.1| transcription antitermination factor NusB [Enterococcus faecium
           PC4.1]
 gi|313587893|gb|EFR66738.1| transcription antitermination factor NusB [Enterococcus faecium
           TX0133a01]
 gi|313592651|gb|EFR71496.1| transcription antitermination factor NusB [Enterococcus faecium
           TX0133B]
 gi|313596539|gb|EFR75384.1| transcription antitermination factor NusB [Enterococcus faecium
           TX0133A]
 gi|313599801|gb|EFR78644.1| transcription antitermination factor NusB [Enterococcus faecium
           TX0133C]
 gi|313642745|gb|EFS07325.1| transcription antitermination factor NusB [Enterococcus faecium
           TX0133a04]
 gi|313643578|gb|EFS08158.1| transcription antitermination factor NusB [Enterococcus faecium
           TX0082]
          Length = 149

 Score =  150 bits (380), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 38/150 (25%), Positives = 63/150 (42%), Gaps = 3/150 (2%)

Query: 10  LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF 69
           +     R   R  A+QAL+ +D     T E            D   + ES ++ V   + 
Sbjct: 1   MNKELSRHEIREMALQALFPLDFNADLTKEDAIFNAIELDHRDMINEDESEFVPV---YL 57

Query: 70  RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISE 129
             ++ GV  +K  +D +I   L   W  +R+  +   ILR  + E+     VP  V ++E
Sbjct: 58  DTLVGGVCAKKDELDKVIEKHLKNNWHINRISKMDLVILRIAIFEMTYVTDVPAAVALNE 117

Query: 130 YVCIAHDFFYGDEPKFINAVLDKVSRKEEI 159
            + +A  F      KF+N VL  V ++ E 
Sbjct: 118 AIELAKTFSDDRSRKFVNGVLSNVLKELEA 147


>gi|91784900|ref|YP_560106.1| transcription antitermination protein NusB [Burkholderia xenovorans
           LB400]
 gi|119372284|sp|Q13V35|NUSB_BURXL RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|91688854|gb|ABE32054.1| NusB antitermination factor [Burkholderia xenovorans LB400]
          Length = 144

 Score =  150 bits (380), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 43/156 (27%), Positives = 69/156 (44%), Gaps = 18/156 (11%)

Query: 10  LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF 69
           +K + RR   R  A Q LYQ  + G    EI           D +L     +   D E  
Sbjct: 1   MKSARRRS--RELATQGLYQWLLSGSPGGEI-----------DAQLRGAQGFDKADHEHL 47

Query: 70  RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISE 129
             ++HGV+   + +   I+ CL       +L  +  ++L     EL     +P  V+I+E
Sbjct: 48  DAVLHGVIRDSEALSAAIAPCLDR--PIEQLSPVERAVLLVAAFELKNHLDIPYRVVINE 105

Query: 130 YVCIAHDFFYGDEPKFINAVLDKVS---RKEEIKRS 162
            V +A  F   D  K++N VLDK+S   R++E + +
Sbjct: 106 AVELAKTFGGADGYKYVNGVLDKLSAQLREDETQAA 141


>gi|256379255|ref|YP_003102915.1| NusB antitermination factor [Actinosynnema mirum DSM 43827]
 gi|255923558|gb|ACU39069.1| NusB antitermination factor [Actinosynnema mirum DSM 43827]
          Length = 139

 Score =  150 bits (380), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 40/139 (28%), Positives = 64/139 (46%), Gaps = 13/139 (9%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           R  AR  AV  +Y+ D  G     ++S+             V S  +    E+   ++ G
Sbjct: 4   RTKARKRAVDVIYEADQRGVDAVTLLSD------------RVGSTDVPPINEYTVSLVEG 51

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
           V   +  ID LIS   +E W+  R+  +  ++LR G+ EL+    VP  V I E V +A 
Sbjct: 52  VTAHRARIDDLISEH-SEGWTLQRMPAVDRAVLRVGLYELLWAADVPDAVAIDEAVELAK 110

Query: 136 DFFYGDEPKFINAVLDKVS 154
                D P+F+N VL +++
Sbjct: 111 GLSTDDSPRFVNGVLGRIA 129


>gi|254507845|ref|ZP_05119975.1| transcription antitermination factor NusB [Vibrio parahaemolyticus
           16]
 gi|323491732|ref|ZP_08096910.1| transcription antitermination protein NusB [Vibrio brasiliensis LMG
           20546]
 gi|323497970|ref|ZP_08102979.1| transcription antitermination protein NusB [Vibrio sinaloensis DSM
           21326]
 gi|219549218|gb|EED26213.1| transcription antitermination factor NusB [Vibrio parahaemolyticus
           16]
 gi|323314094|gb|EGA67180.1| transcription antitermination protein NusB [Vibrio brasiliensis LMG
           20546]
 gi|323317015|gb|EGA70017.1| transcription antitermination protein NusB [Vibrio sinaloensis DSM
           21326]
          Length = 155

 Score =  150 bits (379), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 34/140 (24%), Positives = 61/140 (43%), Gaps = 5/140 (3%)

Query: 24  VQALYQIDIIGCSTTEIISEYETYRFCADTEL---DVESVYLHVDLEWFRVIIHGVMDRK 80
           +QA+Y   I   +   I  ++ +     + E    +        D+ +FR ++ GV+   
Sbjct: 18  LQAIYSWQITKENVATIEEQFLSGGKYDEEEHHASEPALSTPDTDVAYFRDLLTGVVLSH 77

Query: 81  QHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYG 140
             +D  I            LDM+  ++LR  + E+     VP +V+I+E + +A  F   
Sbjct: 78  TELDSKIRPYTAR--PMQDLDMMELALLRLAMYEMTRREDVPYKVVINEAIELAKVFAAE 135

Query: 141 DEPKFINAVLDKVSRKEEIK 160
           +  KF+N VLDK +     K
Sbjct: 136 ESHKFVNGVLDKAAPHVRKK 155


>gi|38233925|ref|NP_939692.1| transcription antitermination protein NusB [Corynebacterium
           diphtheriae NCTC 13129]
 gi|81564845|sp|Q6NH08|NUSB_CORDI RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|38200186|emb|CAE49867.1| Putative transcription termination related protein [Corynebacterium
           diphtheriae]
          Length = 182

 Score =  150 bits (379), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 41/168 (24%), Positives = 76/168 (45%), Gaps = 7/168 (4%)

Query: 1   MTIQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESV 60
           M  Q+ +   K    R  AR  AV  L++ ++       I+ +         T+++    
Sbjct: 1   MKSQETRSSWKRRGSRYKARRRAVDILFEAEMRDIDPVAIVEDRVVLSRLNGTDVNQVP- 59

Query: 61  YLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHS 120
                  + + I+ G       +D LI++ L E WS  R+  +  +ILR  V ELI    
Sbjct: 60  ------SYTKEIVSGAAMELDRLDELIAAHLAEDWSLERIMTVDRAILRVSVWELIFNPD 113

Query: 121 VPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRSGCVSAI 168
           VP+   I E V +A ++     P +++A+LD +++  +  R+G V+ +
Sbjct: 114 VPLATAIIEGVELASEYSTDVSPAYVHALLDSIAKNIDEYRAGSVTPV 161


>gi|167563762|ref|ZP_02356678.1| transcription antitermination protein NusB [Burkholderia
           oklahomensis EO147]
 gi|167570906|ref|ZP_02363780.1| transcription antitermination protein NusB [Burkholderia
           oklahomensis C6786]
          Length = 145

 Score =  150 bits (379), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 44/147 (29%), Positives = 61/147 (41%), Gaps = 14/147 (9%)

Query: 10  LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF 69
           +K S RR  +R  A Q LYQ  +   +  EI           D +L     Y   D    
Sbjct: 1   MKKSARR-QSRELATQGLYQWLLSNAAPGEI-----------DAQLRGALGYDKADKTLL 48

Query: 70  RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISE 129
             I+HGV+     +   IS  L       +L  +  ++L     EL      P  VII+E
Sbjct: 49  DTILHGVIREHAALAEAISPSLDR--PIDQLSPVERAVLLIATYELTHQIETPYRVIINE 106

Query: 130 YVCIAHDFFYGDEPKFINAVLDKVSRK 156
            V +A  F   D  K++N VLDK+S K
Sbjct: 107 AVELAKTFGGSDGYKYVNGVLDKLSVK 133


>gi|144897828|emb|CAM74692.1| NusB antitermination factor [Magnetospirillum gryphiswaldense
           MSR-1]
          Length = 160

 Score =  150 bits (379), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 50/164 (30%), Positives = 82/164 (50%), Gaps = 8/164 (4%)

Query: 7   KKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDL 66
           +K    + RR  ARLAAVQALY ++I G +  + + E+         + +        D+
Sbjct: 2   RKPNPGATRRSAARLAAVQALYSMEITGVTAEQALVEFRQR-----LDSEPRGKLAEPDM 56

Query: 67  EWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVI 126
           +   +++ G       +D  I+  L   W+  RL+ +L +ILRAG  EL      P  V 
Sbjct: 57  DLVALLVRGASFDGGDLDAHIARGLARDWTVDRLESVLRAILRAGAYELKARPQTPARVA 116

Query: 127 ISEYVCIAHDFFYGDEPKFINAVLDKVSRK---EEIKRSGCVSA 167
           I+EYV + H F+ G EP  +NAV+D+++R     E +  G  ++
Sbjct: 117 ITEYVDVTHAFYSGPEPGLVNAVMDRMARALRPAEFEGGGAAAS 160


>gi|310642666|ref|YP_003947424.1| transcription antitermination factor nusb [Paenibacillus polymyxa
           SC2]
 gi|309247616|gb|ADO57183.1| Transcription antitermination factor NusB [Paenibacillus polymyxa
           SC2]
          Length = 149

 Score =  150 bits (379), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 38/144 (26%), Positives = 67/144 (46%), Gaps = 2/144 (1%)

Query: 15  RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74
           +R +AR  AVQ++Y +++        +            E +V      V   +    + 
Sbjct: 2   KRRLARELAVQSMYHMEMNEVDAAAAVDMLLQEAAEE-NEAEVVIKNAEVLRAYVLEHVR 60

Query: 75  GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134
           G  + K+ ID L++  L + W  SRL  +   ILR  V E+I    VP +V ++E + ++
Sbjct: 61  GTWEHKEAIDGLLADYL-KGWQISRLSRVDRQILRLAVYEMIFREDVPAKVAVNEAIELS 119

Query: 135 HDFFYGDEPKFINAVLDKVSRKEE 158
             F   +  KF+N VL +V ++ E
Sbjct: 120 KHFGTEESGKFVNGVLGRVIQELE 143


>gi|83746193|ref|ZP_00943247.1| N utilization substance protein B [Ralstonia solanacearum UW551]
 gi|207728164|ref|YP_002256558.1| n utilization substance protein b [Ralstonia solanacearum MolK2]
 gi|207744100|ref|YP_002260492.1| n utilization substance protein b homolog (protein nusb) [Ralstonia
           solanacearum IPO1609]
 gi|300704874|ref|YP_003746477.1| antitermination factor [Ralstonia solanacearum CFBP2957]
 gi|83727159|gb|EAP74283.1| N utilization substance protein B [Ralstonia solanacearum UW551]
 gi|206591409|emb|CAQ57021.1| n utilization substance protein b homolog (protein nusb) [Ralstonia
           solanacearum MolK2]
 gi|206595504|emb|CAQ62431.1| n utilization substance protein b homolog (protein nusb) [Ralstonia
           solanacearum IPO1609]
 gi|299072538|emb|CBJ43888.1| antitermination factor (N utilization substance B) (transcriptional
           antiterminator) [Ralstonia solanacearum CFBP2957]
          Length = 155

 Score =  150 bits (379), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 35/156 (22%), Positives = 64/156 (41%), Gaps = 15/156 (9%)

Query: 1   MTIQDNKKDLKLSHR--RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVE 58
           MT  ++    K + +  R  AR  A+Q LYQ  +       + +                
Sbjct: 1   MTQDNSPAKPKAAPKSARRRARELALQGLYQWLLNRNDPGVVEAHLHD-----------A 49

Query: 59  SVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIEC 118
             +   D   F  ++HG +  +  +    +  L      + L  +  + L  G  EL+ C
Sbjct: 50  QGFNKADRAHFDALLHGAIREEATLTESFTPFLDR--PVAELSPVERAALLVGAYELVHC 107

Query: 119 HSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVS 154
             +P +V+I+E V +A  F   +  K++N VLDK++
Sbjct: 108 IDIPYKVVINEAVELAKTFGGVEGYKYVNGVLDKLA 143


>gi|318057074|ref|ZP_07975797.1| transcription antitermination protein NusB [Streptomyces sp.
           SA3_actG]
 gi|318080976|ref|ZP_07988308.1| transcription antitermination protein NusB [Streptomyces sp.
           SA3_actF]
 gi|333028359|ref|ZP_08456423.1| putative transcription antitermination protein NusB [Streptomyces
           sp. Tu6071]
 gi|332748211|gb|EGJ78652.1| putative transcription antitermination protein NusB [Streptomyces
           sp. Tu6071]
          Length = 144

 Score =  150 bits (379), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 32/138 (23%), Positives = 62/138 (44%), Gaps = 9/138 (6%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           R  AR  A Q L++ D  G     +++++  +      +  V         E+   ++ G
Sbjct: 4   RNTARKRAFQILFEADQRGTDVLTVLADWVRHSRGDTQQPPVS--------EYTMELVEG 55

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
             +  + ID +I+   +  W   R+ ++  +I+R G  EL+     P  V++ E V +A 
Sbjct: 56  YAEHARRIDEVIAKY-SVDWPLDRMPVVDRNIVRLGAHELVWVDGTPDAVVMDEAVELAK 114

Query: 136 DFFYGDEPKFINAVLDKV 153
           +F   D P F+N +L + 
Sbjct: 115 EFSTDDSPAFVNGLLGRF 132


>gi|125973352|ref|YP_001037262.1| NusB antitermination factor [Clostridium thermocellum ATCC 27405]
 gi|256005458|ref|ZP_05430421.1| NusB antitermination factor [Clostridium thermocellum DSM 2360]
 gi|281417552|ref|ZP_06248572.1| NusB antitermination factor [Clostridium thermocellum JW20]
 gi|166215686|sp|A3DDP0|NUSB_CLOTH RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|125713577|gb|ABN52069.1| NusB antitermination factor [Clostridium thermocellum ATCC 27405]
 gi|255990598|gb|EEU00717.1| NusB antitermination factor [Clostridium thermocellum DSM 2360]
 gi|281408954|gb|EFB39212.1| NusB antitermination factor [Clostridium thermocellum JW20]
 gi|316940416|gb|ADU74450.1| NusB antitermination factor [Clostridium thermocellum DSM 1313]
          Length = 145

 Score =  150 bits (379), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 35/140 (25%), Positives = 63/140 (45%), Gaps = 12/140 (8%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           R  +R  A++ +YQ++I   S  E I+         +            D E+   ++ G
Sbjct: 3   RRASREIAMKLIYQLEIQKDSREEQINNTLEQYDLNEN-----------DREYILDVVKG 51

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
           V   ++ ID  I    ++ W  SR+  +  +ILR  + E+     +P  V I+E V +A 
Sbjct: 52  VFKNQEEIDGTIEKF-SKGWKLSRISKVDLAILRLAIYEMCHRDDIPFTVAINEAVELAK 110

Query: 136 DFFYGDEPKFINAVLDKVSR 155
           ++   +   FIN +L KV +
Sbjct: 111 NYSGEESGSFINGILGKVVK 130


>gi|78065528|ref|YP_368297.1| transcription antitermination protein NusB [Burkholderia sp. 383]
 gi|119372282|sp|Q39IR3|NUSB_BURS3 RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|77966273|gb|ABB07653.1| NusB antitermination factor [Burkholderia sp. 383]
          Length = 145

 Score =  150 bits (379), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 45/159 (28%), Positives = 68/159 (42%), Gaps = 19/159 (11%)

Query: 10  LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF 69
           +K S RR  +R  A Q LYQ  +   S+ EI           D +L     Y   D E  
Sbjct: 1   MKKSARR-QSRELATQGLYQWLLSNASSGEI-----------DAQLRGALGYDKADKELL 48

Query: 70  RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISE 129
             I+HGV+     +   ++  L       +L  +  ++L     EL      P  VII+E
Sbjct: 49  EAILHGVIREHATLVEALTPSLDR--PIEQLSPVERAVLLIATFELTHHVETPYRVIINE 106

Query: 130 YVCIAHDFFYGDEPKFINAVLDKVSRKE-----EIKRSG 163
            V +A  F   D  K++N VLDK++ K      + +R+G
Sbjct: 107 AVELAKTFGGSDGYKYVNGVLDKLAAKLRPAETQARRNG 145


>gi|31793715|ref|NP_856208.1| transcription antitermination protein NusB [Mycobacterium bovis
           AF2122/97]
 gi|121638417|ref|YP_978641.1| transcription antitermination protein NusB [Mycobacterium bovis BCG
           str. Pasteur 1173P2]
 gi|215427926|ref|ZP_03425845.1| transcription antitermination protein NusB [Mycobacterium
           tuberculosis T92]
 gi|215431478|ref|ZP_03429397.1| transcription antitermination protein NusB [Mycobacterium
           tuberculosis EAS054]
 gi|219558534|ref|ZP_03537610.1| transcription antitermination protein NusB [Mycobacterium
           tuberculosis T17]
 gi|224990911|ref|YP_002645598.1| transcription antitermination protein [Mycobacterium bovis BCG str.
           Tokyo 172]
 gi|260187545|ref|ZP_05765019.1| transcription antitermination protein NusB [Mycobacterium
           tuberculosis CPHL_A]
 gi|260201657|ref|ZP_05769148.1| transcription antitermination protein NusB [Mycobacterium
           tuberculosis T46]
 gi|260205850|ref|ZP_05773341.1| transcription antitermination protein NusB [Mycobacterium
           tuberculosis K85]
 gi|289444068|ref|ZP_06433812.1| transcription antitermination factor NusB [Mycobacterium
           tuberculosis T46]
 gi|289448181|ref|ZP_06437925.1| N utilization substance protein B nusB [Mycobacterium tuberculosis
           CPHL_A]
 gi|289570699|ref|ZP_06450926.1| N utilization substance protein B nusB [Mycobacterium tuberculosis
           T17]
 gi|289575238|ref|ZP_06455465.1| N utilization substance protein B nusB [Mycobacterium tuberculosis
           K85]
 gi|289751150|ref|ZP_06510528.1| N utilization substance protein B nusB [Mycobacterium tuberculosis
           T92]
 gi|289754643|ref|ZP_06514021.1| transcription antitermination protein NusB [Mycobacterium
           tuberculosis EAS054]
 gi|39931755|sp|Q7TYC8|NUSB_MYCBO RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|166215697|sp|A1KLN0|NUSB_MYCBP RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|254772648|sp|C1AF01|NUSB_MYCBT RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|31619309|emb|CAD94747.1| N UTILIZATION SUBSTANCE PROTEIN NUSB (NUSB PROTEIN) [Mycobacterium
           bovis AF2122/97]
 gi|121494065|emb|CAL72543.1| N utilization substance protein nusB [Mycobacterium bovis BCG str.
           Pasteur 1173P2]
 gi|224774024|dbj|BAH26830.1| transcription antitermination protein [Mycobacterium bovis BCG str.
           Tokyo 172]
 gi|289416987|gb|EFD14227.1| transcription antitermination factor NusB [Mycobacterium
           tuberculosis T46]
 gi|289421139|gb|EFD18340.1| N utilization substance protein B nusB [Mycobacterium tuberculosis
           CPHL_A]
 gi|289539669|gb|EFD44247.1| N utilization substance protein B nusB [Mycobacterium tuberculosis
           K85]
 gi|289544453|gb|EFD48101.1| N utilization substance protein B nusB [Mycobacterium tuberculosis
           T17]
 gi|289691737|gb|EFD59166.1| N utilization substance protein B nusB [Mycobacterium tuberculosis
           T92]
 gi|289695230|gb|EFD62659.1| transcription antitermination protein NusB [Mycobacterium
           tuberculosis EAS054]
          Length = 156

 Score =  150 bits (379), Expect = 8e-35,   Method: Composition-based stats.
 Identities = 44/145 (30%), Positives = 70/145 (48%), Gaps = 9/145 (6%)

Query: 9   DLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEW 68
           D K    R  AR  AV  L++ ++ G S  E++    T    A+ + D+  ++      +
Sbjct: 3   DRKPVRGRHQARKRAVDLLFEAEVRGISAAEVVD---TRAALAEAKPDIARLH-----PY 54

Query: 69  FRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIIS 128
              +  GV +   HID LI++ L   W+  RL  +  +ILR  V EL+    VP  V++ 
Sbjct: 55  TAAVARGVSEHAAHIDDLITAHL-RGWTLDRLPAVDRAILRVSVWELLHAADVPEPVVVD 113

Query: 129 EYVCIAHDFFYGDEPKFINAVLDKV 153
           E V +A +    D P F+N VL +V
Sbjct: 114 EAVQLAKELSTDDSPGFVNGVLGQV 138


>gi|17545430|ref|NP_518832.1| transcription antitermination protein NusB [Ralstonia solanacearum
           GMI1000]
 gi|17427722|emb|CAD14241.1| probable n utilization substance b homolog (protein nusb).
           transcription regulator [Ralstonia solanacearum GMI1000]
          Length = 161

 Score =  150 bits (379), Expect = 8e-35,   Method: Composition-based stats.
 Identities = 35/156 (22%), Positives = 63/156 (40%), Gaps = 15/156 (9%)

Query: 1   MTIQDNKKDLKLSHR--RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVE 58
           MT  ++    K   +  R  AR  A+Q LYQ  +       + +                
Sbjct: 7   MTQDNSPAKPKAPPKSARRRARELALQGLYQWLLNRNDPGVVEAHLHD-----------A 55

Query: 59  SVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIEC 118
             +   D   F  ++HG +  +  +    +  L      + L  +  + L  G  EL+ C
Sbjct: 56  QGFNKADRAHFDALLHGAIREEATLTESFTPFLDR--PVAELSPVERAALLVGAYELVHC 113

Query: 119 HSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVS 154
             +P +V+I+E V +A  F   +  K++N VLDK++
Sbjct: 114 VDIPYKVVINEAVELAKTFGGVEGYKYVNGVLDKLA 149


>gi|325525004|gb|EGD02919.1| transcription antitermination protein NusB [Burkholderia sp. TJI49]
          Length = 145

 Score =  150 bits (379), Expect = 8e-35,   Method: Composition-based stats.
 Identities = 44/159 (27%), Positives = 67/159 (42%), Gaps = 19/159 (11%)

Query: 10  LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF 69
           +K S RR  +R  A Q LYQ  +   S+ EI           D +L     Y   D    
Sbjct: 1   MKKSARR-QSRELATQGLYQWLLSNASSGEI-----------DAQLRGALGYDKADKALL 48

Query: 70  RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISE 129
             I+HGV+     +   ++  L       +L  +  ++L     EL      P  VII+E
Sbjct: 49  DAILHGVIREHATLVEALTPSLDR--PIDQLSPVERAVLLIATFELTHHVETPYRVIINE 106

Query: 130 YVCIAHDFFYGDEPKFINAVLDKVSRKE-----EIKRSG 163
            V +A  F   D  K++N VLDK++ K      + +R+G
Sbjct: 107 AVELAKTFGGSDGYKYVNGVLDKLAAKLRPAETQARRNG 145


>gi|161525612|ref|YP_001580624.1| transcription antitermination protein NusB [Burkholderia
           multivorans ATCC 17616]
 gi|189349659|ref|YP_001945287.1| transcription antitermination protein NusB [Burkholderia
           multivorans ATCC 17616]
 gi|221201158|ref|ZP_03574198.1| transcription antitermination factor NusB [Burkholderia multivorans
           CGD2M]
 gi|221206389|ref|ZP_03579402.1| transcription antitermination factor NusB [Burkholderia multivorans
           CGD2]
 gi|221213666|ref|ZP_03586640.1| transcription antitermination factor NusB [Burkholderia multivorans
           CGD1]
 gi|238687024|sp|A9AF25|NUSB_BURM1 RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|160343041|gb|ABX16127.1| NusB antitermination factor [Burkholderia multivorans ATCC 17616]
 gi|189333681|dbj|BAG42751.1| N utilization substance protein B [Burkholderia multivorans ATCC
           17616]
 gi|221166455|gb|EED98927.1| transcription antitermination factor NusB [Burkholderia multivorans
           CGD1]
 gi|221173698|gb|EEE06132.1| transcription antitermination factor NusB [Burkholderia multivorans
           CGD2]
 gi|221179008|gb|EEE11415.1| transcription antitermination factor NusB [Burkholderia multivorans
           CGD2M]
          Length = 145

 Score =  150 bits (379), Expect = 8e-35,   Method: Composition-based stats.
 Identities = 43/159 (27%), Positives = 67/159 (42%), Gaps = 19/159 (11%)

Query: 10  LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF 69
           +K S RR  +R  A Q LYQ  +   S+ EI           D +L     Y   D    
Sbjct: 1   MKKSARR-QSRELATQGLYQWLLSNASSGEI-----------DAQLRGALGYDKADKALL 48

Query: 70  RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISE 129
             I+HGV+     +   ++  L       +L  +  ++L     EL      P  V+I+E
Sbjct: 49  DAILHGVIREHATLVDALTPSLDR--PIDQLSPVERAVLLIATFELTHHIETPYRVVINE 106

Query: 130 YVCIAHDFFYGDEPKFINAVLDKVSRKE-----EIKRSG 163
            V +A  F   D  K++N VLDK++ K      + +R+G
Sbjct: 107 AVELAKTFGGSDGYKYVNGVLDKLAAKLRPAETQARRNG 145


>gi|307730712|ref|YP_003907936.1| NusB antitermination factor [Burkholderia sp. CCGE1003]
 gi|307585247|gb|ADN58645.1| NusB antitermination factor [Burkholderia sp. CCGE1003]
          Length = 144

 Score =  150 bits (379), Expect = 8e-35,   Method: Composition-based stats.
 Identities = 42/147 (28%), Positives = 64/147 (43%), Gaps = 15/147 (10%)

Query: 10  LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF 69
           +K + RR   R  A Q LYQ  + G    EI           D +L     +   D E  
Sbjct: 1   MKSARRRS--RELATQGLYQWLLSGSPGGEI-----------DAQLRGAQGFDKADHEHL 47

Query: 70  RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISE 129
             I+HGV+   + +   I+ CL       +L  +  ++L     EL     +P  V+I+E
Sbjct: 48  DAILHGVIRDSEALSADIAPCLDR--PIDQLSPVERAVLLVAAFELKNHIDIPYRVVINE 105

Query: 130 YVCIAHDFFYGDEPKFINAVLDKVSRK 156
            V +A  F   D  K++N VLDK++ K
Sbjct: 106 AVELAKTFGGADGYKYVNGVLDKLAAK 132


>gi|237747092|ref|ZP_04577572.1| transcription termination [Oxalobacter formigenes HOxBLS]
 gi|229378443|gb|EEO28534.1| transcription termination [Oxalobacter formigenes HOxBLS]
          Length = 159

 Score =  150 bits (379), Expect = 8e-35,   Method: Composition-based stats.
 Identities = 42/171 (24%), Positives = 64/171 (37%), Gaps = 20/171 (11%)

Query: 1   MTIQDNKK----DLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELD 56
           MT   NK       K    R  +R  A+Q LY+  +       II             + 
Sbjct: 1   MTFMKNKSVHANPSKNRSPRHRSREFALQGLYEWLLNKDDAPVIIE-----------HIR 49

Query: 57  VESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELI 116
               +   D   F  ++ G + + + +   I   +    S   L  +  +IL  G  EL 
Sbjct: 50  QAHGFDKADTGHFVTLVSGTIHQAETLRSEIVPHIDR--SLDELSPVEHAILLLGAYELK 107

Query: 117 ECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRSGCVSA 167
               +P  V+I+E V +   F   D  KF+N VLDK++ K    R   V A
Sbjct: 108 NHIEIPYRVVINEAVELTKSFGGIDGHKFVNGVLDKIAAKL---RPAEVEA 155


>gi|170760171|ref|YP_001787214.1| transcription antitermination protein NusB [Clostridium botulinum
           A3 str. Loch Maree]
 gi|238688744|sp|B1KT54|NUSB_CLOBM RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|169407160|gb|ACA55571.1| N utilization substance protein B [Clostridium botulinum A3 str.
           Loch Maree]
          Length = 141

 Score =  150 bits (379), Expect = 8e-35,   Method: Composition-based stats.
 Identities = 44/140 (31%), Positives = 67/140 (47%), Gaps = 2/140 (1%)

Query: 15  RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLH-VDLEWFRVII 73
            R  +R  A++ L+Q  + G +  E +   +  R   D E D ESV L  VD+++ + II
Sbjct: 2   NRRKSREVAMRLLFQTTLNGENLEEALENLKDVRESEDKEKDYESVDLKDVDIDYVKRII 61

Query: 74  HGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCI 133
            G+   K+ ID  I   L + W   RL  +  SILR    EL     +P  V ++E + +
Sbjct: 62  KGIEKNKEEIDGKIKGNL-KNWKIERLSKVDLSILRLCTYELKFEEDIPKRVSVNEAIEL 120

Query: 134 AHDFFYGDEPKFINAVLDKV 153
           A  +       FIN VL K+
Sbjct: 121 AKKYSGEKSATFINGVLGKM 140


>gi|107022034|ref|YP_620361.1| transcription antitermination protein NusB [Burkholderia
           cenocepacia AU 1054]
 gi|116688978|ref|YP_834601.1| transcription antitermination protein NusB [Burkholderia
           cenocepacia HI2424]
 gi|170732269|ref|YP_001764216.1| transcription antitermination protein NusB [Burkholderia
           cenocepacia MC0-3]
 gi|206561400|ref|YP_002232165.1| transcription antitermination protein NusB [Burkholderia
           cenocepacia J2315]
 gi|254246083|ref|ZP_04939404.1| Transcription termination factor [Burkholderia cenocepacia PC184]
 gi|119372281|sp|Q1BYB7|NUSB_BURCA RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|166215666|sp|A0K5D1|NUSB_BURCH RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|238688594|sp|B1JX75|NUSB_BURCC RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|238693104|sp|B4EBT9|NUSB_BURCJ RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|105892223|gb|ABF75388.1| NusB antitermination factor [Burkholderia cenocepacia AU 1054]
 gi|116647067|gb|ABK07708.1| NusB antitermination factor [Burkholderia cenocepacia HI2424]
 gi|124870859|gb|EAY62575.1| Transcription termination factor [Burkholderia cenocepacia PC184]
 gi|169815511|gb|ACA90094.1| NusB antitermination factor [Burkholderia cenocepacia MC0-3]
 gi|198037442|emb|CAR53377.1| probable N utilization substance protein B [Burkholderia
           cenocepacia J2315]
          Length = 145

 Score =  150 bits (379), Expect = 8e-35,   Method: Composition-based stats.
 Identities = 44/159 (27%), Positives = 67/159 (42%), Gaps = 19/159 (11%)

Query: 10  LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF 69
           +K S RR  +R  A Q LYQ  +    + EI           D +L     Y   D E  
Sbjct: 1   MKKSARR-QSRELATQGLYQWLLSNAPSGEI-----------DAQLRGALGYDKADKELL 48

Query: 70  RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISE 129
             I+HGV+     +   ++  L       +L  +  ++L     EL      P  VII+E
Sbjct: 49  EAILHGVIREHATLVEALAPSLDR--PIDQLSPVERAVLLIATFELTHHVETPYRVIINE 106

Query: 130 YVCIAHDFFYGDEPKFINAVLDKVSRKE-----EIKRSG 163
            V +A  F   D  K++N VLDK++ K      + +R+G
Sbjct: 107 AVELAKTFGGSDGYKYVNGVLDKLAAKLRPAETQARRNG 145


>gi|153005587|ref|YP_001379912.1| NusB antitermination factor [Anaeromyxobacter sp. Fw109-5]
 gi|166215659|sp|A7HDY2|NUSB_ANADF RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|152029160|gb|ABS26928.1| NusB antitermination factor [Anaeromyxobacter sp. Fw109-5]
          Length = 143

 Score =  149 bits (378), Expect = 8e-35,   Method: Composition-based stats.
 Identities = 43/150 (28%), Positives = 70/150 (46%), Gaps = 12/150 (8%)

Query: 12  LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71
           +S +R  AR  A+QALYQID+      + +S +       + E+         D E F  
Sbjct: 1   MSLKRTRARERALQALYQIDVAAEGIDDALSRFWKSFEPVEREVME-------DAEGF-- 51

Query: 72  IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
            + GV   ++ ID  I   ++  W   R+  +  ++LR  V EL+    VPV+V I+E +
Sbjct: 52  -VRGVAAHRRTIDDTIEG-VSTNWRLDRMAKVDRNVLRLAVYELL-RTDVPVKVAINEAI 108

Query: 132 CIAHDFFYGDEPKFINAVLDKVSRKEEIKR 161
            +   +       F+N VLDKV+     +R
Sbjct: 109 ELGKKYGSESSGAFVNGVLDKVAAGLPPER 138


>gi|22095947|sp|Q8Y1H9|NUSB_RALSO RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
          Length = 155

 Score =  149 bits (378), Expect = 8e-35,   Method: Composition-based stats.
 Identities = 35/156 (22%), Positives = 63/156 (40%), Gaps = 15/156 (9%)

Query: 1   MTIQDNKKDLKLSHR--RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVE 58
           MT  ++    K   +  R  AR  A+Q LYQ  +       + +                
Sbjct: 1   MTQDNSPAKPKAPPKSARRRARELALQGLYQWLLNRNDPGVVEAHLHD-----------A 49

Query: 59  SVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIEC 118
             +   D   F  ++HG +  +  +    +  L      + L  +  + L  G  EL+ C
Sbjct: 50  QGFNKADRAHFDALLHGAIREEATLTESFTPFLDR--PVAELSPVERAALLVGAYELVHC 107

Query: 119 HSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVS 154
             +P +V+I+E V +A  F   +  K++N VLDK++
Sbjct: 108 VDIPYKVVINEAVELAKTFGGVEGYKYVNGVLDKLA 143


>gi|229493670|ref|ZP_04387455.1| transcription antitermination factor NusB [Rhodococcus erythropolis
           SK121]
 gi|229319631|gb|EEN85467.1| transcription antitermination factor NusB [Rhodococcus erythropolis
           SK121]
          Length = 165

 Score =  149 bits (378), Expect = 8e-35,   Method: Composition-based stats.
 Identities = 40/144 (27%), Positives = 62/144 (43%), Gaps = 9/144 (6%)

Query: 11  KLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFR 70
           K    R  AR  AV  L++ +        + SE         ++L V+   +     +  
Sbjct: 6   KKLGARHKARKRAVDFLFEAEARDLDPVALASER--------SDLSVKDDAVAPVAAYTV 57

Query: 71  VIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEY 130
            ++ GV +    ID +ISS L + W+  RL  +  +ILR  V EL     VP  V + E 
Sbjct: 58  TLVSGVAENLDRIDQVISSHL-QDWTLERLPAVDRAILRIAVWELFHATDVPPVVAVDEA 116

Query: 131 VCIAHDFFYGDEPKFINAVLDKVS 154
           V +A      D P F+N +L +V 
Sbjct: 117 VELAKQLSTDDSPGFVNGILGQVV 140


>gi|78222837|ref|YP_384584.1| NusB antitermination factor [Geobacter metallireducens GS-15]
 gi|119390772|sp|Q39V65|NUSB_GEOMG RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|78194092|gb|ABB31859.1| NusB antitermination factor [Geobacter metallireducens GS-15]
          Length = 138

 Score =  149 bits (378), Expect = 8e-35,   Method: Composition-based stats.
 Identities = 35/139 (25%), Positives = 64/139 (46%), Gaps = 11/139 (7%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           R + R  A+Q LY  D      + ++          +   D           +   ++ G
Sbjct: 4   RRLGREIALQLLYSRDYTVGEASSLL----------EMVFDEAEPGTAAGRAFSDELVRG 53

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
           V++ ++ ID  I+   ++ W+ SR+  +  +ILR  + EL+    +P  V I+E + +A 
Sbjct: 54  VLEHRETIDATITEK-SKNWAISRMAKVDLNILRLAIYELLYRGDIPKNVTINEAIEVAK 112

Query: 136 DFFYGDEPKFINAVLDKVS 154
            F   D P FIN +LD+V+
Sbjct: 113 KFGTEDSPAFINGILDEVA 131


>gi|134294984|ref|YP_001118719.1| transcription antitermination protein NusB [Burkholderia
           vietnamiensis G4]
 gi|166215672|sp|A4JC81|NUSB_BURVG RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|134138141|gb|ABO53884.1| NusB antitermination factor [Burkholderia vietnamiensis G4]
          Length = 145

 Score =  149 bits (378), Expect = 8e-35,   Method: Composition-based stats.
 Identities = 43/147 (29%), Positives = 62/147 (42%), Gaps = 14/147 (9%)

Query: 10  LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF 69
           +K S RR  +R  A Q LYQ  +   S+ EI           D +L     Y   D E  
Sbjct: 1   MKKSARR-QSRELATQGLYQWLLSNASSGEI-----------DAQLRGALGYDKADKELL 48

Query: 70  RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISE 129
             I+HGV+     +   I+  L       +L  +  ++L     EL      P  VII+E
Sbjct: 49  EAILHGVIREHATLVEAITPSLDR--PIDQLSPVERAVLLIATFELTHHVETPYRVIINE 106

Query: 130 YVCIAHDFFYGDEPKFINAVLDKVSRK 156
            V +   F   D  K++N VLDK++ K
Sbjct: 107 AVELTKTFGGSDGYKYVNGVLDKLAAK 133


>gi|194333302|ref|YP_002015162.1| NusB antitermination factor [Prosthecochloris aestuarii DSM 271]
 gi|238693314|sp|B4S517|NUSB_PROA2 RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|194311120|gb|ACF45515.1| NusB antitermination factor [Prosthecochloris aestuarii DSM 271]
          Length = 168

 Score =  149 bits (378), Expect = 9e-35,   Method: Composition-based stats.
 Identities = 44/157 (28%), Positives = 74/157 (47%), Gaps = 15/157 (9%)

Query: 12  LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71
            +HRR I R   VQALY +D+    T        T     D +           + +F+ 
Sbjct: 2   KAHRRHI-REKIVQALYTLDVRDTDTATAGDWLITPEISKDPKA----------IRFFKQ 50

Query: 72  IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
           ++  ++D ++ ID  IS   T  W  SR+ +I  +ILR  + E++    +P +V I+E +
Sbjct: 51  LLGAIVDNREEIDQYISKH-TFNWDMSRIAIIDKNILRMAMAEILYFEDIPPKVSINEAI 109

Query: 132 CIAHDF-FYGDEPKFINAVLDKVSRKEEIKRSGCVSA 167
            IA  F       KF+N +LD V    ++ +SG ++ 
Sbjct: 110 EIAKKFNSTDKSSKFVNGILDAVY--NDLNKSGKINK 144


>gi|296136867|ref|YP_003644109.1| NusB antitermination factor [Thiomonas intermedia K12]
 gi|294341036|emb|CAZ89431.1| putative NusB antitermination factor [Thiomonas sp. 3As]
 gi|295796989|gb|ADG31779.1| NusB antitermination factor [Thiomonas intermedia K12]
          Length = 202

 Score =  149 bits (378), Expect = 9e-35,   Method: Composition-based stats.
 Identities = 40/173 (23%), Positives = 70/173 (40%), Gaps = 21/173 (12%)

Query: 1   MTIQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESV 60
           MT     K       R  +R  A Q +Y+  + G  T  I +                  
Sbjct: 1   MTATTAPK-----SARRKSRELAFQGIYEWLLAGSDTGAIEAFLHERY-----------P 44

Query: 61  YLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHS 120
            + +D + F+ ++HG +     +D LI   +  +   S L  +  ++L  G  EL     
Sbjct: 45  TIKLDDDHFQSLLHGALAEAGPLDALIQPHIDRQ--TSELSPVEHALLLMGAFELQRHLD 102

Query: 121 VPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVS---RKEEIKRSGCVSAITQ 170
           VP  V+I+E V +   +   D  K++N VLD+++   RK E++ +       Q
Sbjct: 103 VPYRVVINEAVELGKVYGGTDGYKYVNGVLDRIAAQLRKTEVEAANQSHPQAQ 155


>gi|78485740|ref|YP_391665.1| NusB antitermination factor [Thiomicrospira crunogena XCL-2]
 gi|119390843|sp|Q31FT2|NUSB_THICR RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|78364026|gb|ABB41991.1| NusB antitermination factor [Thiomicrospira crunogena XCL-2]
          Length = 161

 Score =  149 bits (378), Expect = 9e-35,   Method: Composition-based stats.
 Identities = 41/139 (29%), Positives = 67/139 (48%), Gaps = 13/139 (9%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           R   R  A+QALYQ  +    T +II ++             E   +  D+  F+ I++ 
Sbjct: 24  RTQTRRVALQALYQWQVNHSETVDIIKQF-----------SEEGRLVDTDVALFQEIVNE 72

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
           V +    +D L +  L    + +R+D +  +I+R GV EL     +P  V+I+E V +A 
Sbjct: 73  VANHAADLDELYAPFLDR--AVARIDPVEKNIMRMGVFELQNKLEIPYRVVINESVELAK 130

Query: 136 DFFYGDEPKFINAVLDKVS 154
            F   D  K+IN +LDK +
Sbjct: 131 RFGAEDSHKYINGILDKAA 149


>gi|254448007|ref|ZP_05061471.1| transcription antitermination factor NusB [gamma proteobacterium
           HTCC5015]
 gi|198262433|gb|EDY86714.1| transcription antitermination factor NusB [gamma proteobacterium
           HTCC5015]
          Length = 188

 Score =  149 bits (378), Expect = 9e-35,   Method: Composition-based stats.
 Identities = 44/161 (27%), Positives = 72/161 (44%), Gaps = 6/161 (3%)

Query: 2   TIQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVY 61
           +    +K L  +  R   R   +QALYQ       +++++ ++       +   D     
Sbjct: 34  SQGKRRKKLSRTEARRKTRQRILQALYQCYFNPLPSSKLVQQFYDDEVGEEEGND----M 89

Query: 62  LHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSV 121
             VD ++F+  +   +D+ + +D L  + L  K    RLD +   ILR  V EL E   V
Sbjct: 90  FGVDADFFQAALSTCVDKTEQLDELYCAHL--KMPIDRLDPVELCILRLAVFELSERLDV 147

Query: 122 PVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRS 162
           P  V+I+E V +A  +   D  KFIN V+DK +R       
Sbjct: 148 PRRVVINEAVELAKSYGAEDGHKFINGVIDKTARDLRPHEQ 188


>gi|239939930|ref|ZP_04691867.1| transcription antitermination protein NusB [Streptomyces
           roseosporus NRRL 15998]
 gi|239986415|ref|ZP_04707079.1| transcription antitermination protein NusB [Streptomyces
           roseosporus NRRL 11379]
 gi|291443361|ref|ZP_06582751.1| transcription antitermination protein NusB [Streptomyces
           roseosporus NRRL 15998]
 gi|291346308|gb|EFE73212.1| transcription antitermination protein NusB [Streptomyces
           roseosporus NRRL 15998]
          Length = 143

 Score =  149 bits (378), Expect = 9e-35,   Method: Composition-based stats.
 Identities = 40/147 (27%), Positives = 67/147 (45%), Gaps = 12/147 (8%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           R  AR  A Q L++ D  G S   +++++  +    D +  V         E+   ++ G
Sbjct: 4   RNKARKRAFQILFEADQRGASVQSVLADWVRHSRTDDRQPPVG--------EFTMELVEG 55

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
                  ID LI +     W   R+ ++  +ILR G  ELI     P  V+I E V +A 
Sbjct: 56  YAQYADRIDDLIVTYAV-DWEIDRMPVVDRNILRLGAYELIWMDETPDAVVIDEAVQLAK 114

Query: 136 DFFYGDEPKFINAVLDKVSRKEEIKRS 162
           +F   D P F+N +L   +R +++K +
Sbjct: 115 EFSTDDSPSFVNGLL---ARFKDLKPN 138


>gi|115350870|ref|YP_772709.1| transcription antitermination protein NusB [Burkholderia ambifaria
           AMMD]
 gi|170702886|ref|ZP_02893730.1| NusB antitermination factor [Burkholderia ambifaria IOP40-10]
 gi|171321369|ref|ZP_02910324.1| NusB antitermination factor [Burkholderia ambifaria MEX-5]
 gi|172059882|ref|YP_001807534.1| transcription antitermination protein NusB [Burkholderia ambifaria
           MC40-6]
 gi|122323813|sp|Q0BHJ8|NUSB_BURCM RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|238689186|sp|B1YUJ1|NUSB_BURA4 RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|115280858|gb|ABI86375.1| NusB antitermination factor [Burkholderia ambifaria AMMD]
 gi|170132203|gb|EDT00687.1| NusB antitermination factor [Burkholderia ambifaria IOP40-10]
 gi|171093347|gb|EDT38540.1| NusB antitermination factor [Burkholderia ambifaria MEX-5]
 gi|171992399|gb|ACB63318.1| NusB antitermination factor [Burkholderia ambifaria MC40-6]
          Length = 145

 Score =  149 bits (378), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 44/159 (27%), Positives = 67/159 (42%), Gaps = 19/159 (11%)

Query: 10  LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF 69
           +K S RR  +R  A Q LYQ  +   +  EI           D +L     Y   D E  
Sbjct: 1   MKKSARR-QSRELATQGLYQWLLSNAAPGEI-----------DAQLRGALGYDKADKELL 48

Query: 70  RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISE 129
             I+HGV+     +   ++  L       +L  +  ++L     EL      P  VII+E
Sbjct: 49  DAILHGVIREHATLIEALTPSLDR--PVDQLSPVERAVLLIATFELTHHVETPYRVIINE 106

Query: 130 YVCIAHDFFYGDEPKFINAVLDKVSRKE-----EIKRSG 163
            V +A  F   D  K++N VLDK++ K      + +R+G
Sbjct: 107 AVELAKTFGGSDGYKYVNGVLDKLAAKLRPAETQARRNG 145


>gi|226306485|ref|YP_002766445.1| transcription antitermination protein NusB [Rhodococcus
           erythropolis PR4]
 gi|259514883|sp|C0ZZC1|NUSB_RHOE4 RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|226185602|dbj|BAH33706.1| transcription antitermination protein NusB [Rhodococcus
           erythropolis PR4]
          Length = 165

 Score =  149 bits (378), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 40/144 (27%), Positives = 62/144 (43%), Gaps = 9/144 (6%)

Query: 11  KLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFR 70
           K    R  AR  AV  L++ +        + SE         ++L V+   +     +  
Sbjct: 6   KKLGARHKARKRAVDFLFEAEARDLDPVALASER--------SDLSVKDDAVAPVAAYTV 57

Query: 71  VIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEY 130
            ++ GV +    ID +ISS L + W+  RL  +  +ILR  V EL     VP  V + E 
Sbjct: 58  TLVSGVAENLDRIDQVISSHL-QDWTLERLPAVDRAILRIAVWELFHATDVPPVVAVDEA 116

Query: 131 VCIAHDFFYGDEPKFINAVLDKVS 154
           V +A      D P F+N +L +V 
Sbjct: 117 VELAKQLSTDDSPGFVNGILGQVV 140


>gi|304413734|ref|ZP_07395178.1| transcription termination factor [Candidatus Regiella insecticola
           LSR1]
 gi|304283825|gb|EFL92219.1| transcription termination factor [Candidatus Regiella insecticola
           LSR1]
          Length = 182

 Score =  149 bits (378), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 37/148 (25%), Positives = 67/148 (45%), Gaps = 17/148 (11%)

Query: 27  LYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLL 86
           LY   +      +I S + +           E     VD+ +F  ++ GV      +D L
Sbjct: 17  LYSWQLSKNDIADIQSYFLS-----------EQDMKEVDINYFGQLLSGVAVDTATLDRL 65

Query: 87  ISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFI 146
           ++  L+ +     L  I  +ILR  V EL +   +P +V+I+E + +A  F   D  KF+
Sbjct: 66  MAPYLSRQ--IEDLGQIEKAILRLAVFELSQRDDIPYKVVINEAIELAKIFGAEDSHKFV 123

Query: 147 NAVLDKVS----RKEEIKRSGCVSAITQ 170
           N VLDK++    +++++  S  +    Q
Sbjct: 124 NGVLDKIAPIIRKRKQLNTSQVIPTTLQ 151


>gi|256391589|ref|YP_003113153.1| NusB antitermination factor [Catenulispora acidiphila DSM 44928]
 gi|256357815|gb|ACU71312.1| NusB antitermination factor [Catenulispora acidiphila DSM 44928]
          Length = 145

 Score =  149 bits (378), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 36/151 (23%), Positives = 74/151 (49%), Gaps = 7/151 (4%)

Query: 12  LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71
           ++  R  AR  A++ L++ D+ G     ++++ +        E  +  V       +   
Sbjct: 1   MASPRSKARQRALEILFEADLRGVDPRTVLADTQARIRAQGPEGTIPQV-----QPYAAT 55

Query: 72  IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
           ++ GV++    ID L+    +E W+  R+  +  ++LR GV EL+    VP  V++ E V
Sbjct: 56  LVEGVLEHVDKIDDLLDEH-SEGWALDRMPTVDRNVLRIGVYELLWQSDVPDAVVLDEAV 114

Query: 132 CIAHDFFYGDEPKFINAVLDKVSR-KEEIKR 161
            +A      + P+F+N +L +++  K+ +KR
Sbjct: 115 SLARLMSTDESPQFVNGLLARIAEVKDSLKR 145


>gi|295698399|ref|YP_003603054.1| transcription antitermination factor NusB [Candidatus Riesia
           pediculicola USDA]
 gi|291157256|gb|ADD79701.1| transcription antitermination factor NusB [Candidatus Riesia
           pediculicola USDA]
          Length = 140

 Score =  149 bits (378), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 47/153 (30%), Positives = 75/153 (49%), Gaps = 14/153 (9%)

Query: 12  LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71
           +   R  AR+ AVQALY   I G   + I+ ++            ++S  + VD+E+F+ 
Sbjct: 1   MRRIRHKARIMAVQALYSWQISGTKNSLIVVDFLNM---------IQSKKIDVDIEYFKK 51

Query: 72  IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
           I  G  ++   ID  +    +       +D I  +ILR GV EL+    +P +VII+E +
Sbjct: 52  IFIGTSNKVSKIDQKLFRHTSRALKL--IDQIEKAILRLGVFELLYIK-IPYKVIINEAI 108

Query: 132 CIAHDFFYGDEPKFINAVLDKVSRKEEIKRSGC 164
            ++  F      KF+N VLDK+  K+  K SG 
Sbjct: 109 ELSKKFGSERSYKFVNGVLDKIVFKK--KESGS 139


>gi|15615348|ref|NP_243651.1| transcription antitermination protein NusB [Bacillus halodurans
           C-125]
 gi|20139208|sp|Q9K965|NUSB_BACHD RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|10175406|dbj|BAB06504.1| transcriptional terminator [Bacillus halodurans C-125]
          Length = 134

 Score =  149 bits (378), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 38/138 (27%), Positives = 62/138 (44%), Gaps = 15/138 (10%)

Query: 15  RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74
            R ++RL AVQALYQ+D+I  S  + I         A                +   ++ 
Sbjct: 2   NRRLSRLRAVQALYQMDVIDTSMEKAIESVLDEGEEA--------------SSFMSDLVS 47

Query: 75  GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134
           G +  ++ +D L +  L + W+  R+  +  +ILR  + EL     +P  V  +E + +A
Sbjct: 48  GTVTHQEELDRLYADHL-QGWTVDRIGNVDRAILRMALYELYYVDDIPKNVSFNEAIELA 106

Query: 135 HDFFYGDEPKFINAVLDK 152
             F   D  +FIN VL K
Sbjct: 107 KAFGGEDAGRFINGVLSK 124


>gi|39996792|ref|NP_952743.1| N utilization substance protein B [Geobacter sulfurreducens PCA]
 gi|81702305|sp|Q74CI1|NUSB_GEOSL RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|39983680|gb|AAR35070.1| N utilization substance protein B [Geobacter sulfurreducens PCA]
 gi|298505803|gb|ADI84526.1| transcription termination factor NusB [Geobacter sulfurreducens
           KN400]
          Length = 138

 Score =  149 bits (378), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 37/139 (26%), Positives = 63/139 (45%), Gaps = 11/139 (7%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           R + R  A+Q LY  D        ++          +  LD           +   ++ G
Sbjct: 4   RRLGRELALQMLYSRDYAAGEAAPLL----------ELVLDESEPGAAAGRSFADDLVRG 53

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
           V++ +Q ID  I+   ++ WS  R+  +  SILR  + EL+    +P  V I+E + +A 
Sbjct: 54  VLEHRQEIDTAITGA-SKNWSIGRMARVDLSILRMAMYELLFRSDIPKNVTINEAIEVAK 112

Query: 136 DFFYGDEPKFINAVLDKVS 154
            F   D P FIN +LD+++
Sbjct: 113 KFGTEDSPAFINGILDEIA 131


>gi|307718673|ref|YP_003874205.1| N-utilization substance protein B [Spirochaeta thermophila DSM
           6192]
 gi|306532398|gb|ADN01932.1| N-utilization substance protein B [Spirochaeta thermophila DSM
           6192]
 gi|315185797|gb|EFU19563.1| NusB antitermination factor [Spirochaeta thermophila DSM 6578]
          Length = 136

 Score =  149 bits (377), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 44/140 (31%), Positives = 64/140 (45%), Gaps = 12/140 (8%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           R  AR+ A QAL+  D  G    E+ S        AD E+  E         + ++++ G
Sbjct: 4   RRKARILAFQALFASDGGGGDGLEVFS-----FPWADGEIPEEV------RTFAQLLLRG 52

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
            ++    +D LI   L E W F R+     +ILR  V  L+    +P  VII E V IA 
Sbjct: 53  TLEHLPEVDDLIKKHL-EHWDFGRIARTDRAILRMSVYALLYQKEIPARVIIDEAVEIAK 111

Query: 136 DFFYGDEPKFINAVLDKVSR 155
            F   D  +F+N VLD + +
Sbjct: 112 QFGTQDSYRFVNGVLDAIRK 131


>gi|290961848|ref|YP_003493030.1| NusB family protein [Streptomyces scabiei 87.22]
 gi|260651374|emb|CBG74496.1| putative NusB-family protein [Streptomyces scabiei 87.22]
          Length = 144

 Score =  149 bits (377), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 35/138 (25%), Positives = 65/138 (47%), Gaps = 9/138 (6%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           R  AR  A Q L++ D  G     +++++  +      +  V         E+   ++ G
Sbjct: 4   RNTARKRAFQILFEGDQRGADVLTVLADWIRHAHNDTRQPPVS--------EYTMQLVEG 55

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
             +  + ID LI+   +  W+  R+ ++  +ILR G  ELI   + P  V++ E V +A 
Sbjct: 56  YSEHARRIDELIAQY-SVGWTLDRMPVVDRNILRLGAYELIWVDATPDAVVLDEMVQLAK 114

Query: 136 DFFYGDEPKFINAVLDKV 153
           +F   D P F+N +L ++
Sbjct: 115 EFSTDDSPSFVNGLLGRL 132


>gi|30022264|ref|NP_833895.1| transcription antitermination protein NusB [Bacillus cereus ATCC
           14579]
 gi|206971091|ref|ZP_03232042.1| N utilization substance protein B [Bacillus cereus AH1134]
 gi|218233314|ref|YP_002368985.1| transcription antitermination protein NusB [Bacillus cereus B4264]
 gi|218899346|ref|YP_002447757.1| N utilization substance protein B [Bacillus cereus G9842]
 gi|228902700|ref|ZP_04066847.1| N utilization substance protein B [Bacillus thuringiensis IBL 4222]
 gi|228910018|ref|ZP_04073838.1| N utilization substance protein B [Bacillus thuringiensis IBL 200]
 gi|228922937|ref|ZP_04086231.1| N utilization substance protein B [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
 gi|228967223|ref|ZP_04128259.1| N utilization substance protein B [Bacillus thuringiensis serovar
           sotto str. T04001]
 gi|228974275|ref|ZP_04134844.1| N utilization substance protein B [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|296504671|ref|YP_003666371.1| transcription antitermination protein NusB [Bacillus thuringiensis
           BMB171]
 gi|39931865|sp|Q818R4|NUSB_BACCR RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|226737439|sp|B7IXH3|NUSB_BACC2 RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|226737885|sp|B7HB53|NUSB_BACC4 RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|29897821|gb|AAP11096.1| N utilization substance protein B [Bacillus cereus ATCC 14579]
 gi|206733863|gb|EDZ51034.1| N utilization substance protein B [Bacillus cereus AH1134]
 gi|218161271|gb|ACK61263.1| N utilization substance protein B [Bacillus cereus B4264]
 gi|218545985|gb|ACK98379.1| N utilization substance protein B [Bacillus cereus G9842]
 gi|228785325|gb|EEM33335.1| N utilization substance protein B [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228792592|gb|EEM40158.1| N utilization substance protein B [Bacillus thuringiensis serovar
           sotto str. T04001]
 gi|228836708|gb|EEM82055.1| N utilization substance protein B [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
 gi|228849535|gb|EEM94369.1| N utilization substance protein B [Bacillus thuringiensis IBL 200]
 gi|228856887|gb|EEN01400.1| N utilization substance protein B [Bacillus thuringiensis IBL 4222]
 gi|296325723|gb|ADH08651.1| transcription antitermination protein NusB [Bacillus thuringiensis
           BMB171]
 gi|326941963|gb|AEA17859.1| transcription antitermination protein [Bacillus thuringiensis
           serovar chinensis CT-43]
          Length = 130

 Score =  149 bits (377), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 41/139 (29%), Positives = 63/139 (45%), Gaps = 14/139 (10%)

Query: 15  RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74
           +R  AR  A+QALYQ+DI G    ++  E          E             +   ++ 
Sbjct: 2   KRRTARERAMQALYQMDITGELEPKVAVENTLDEGEETNE-------------FLESLVV 48

Query: 75  GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134
           G ++ K+ ID  I   L +KW   R+ ++  SILR  V E+     +P  V I+E + IA
Sbjct: 49  GFVENKEAIDEAIRQNL-KKWKLERISIVDRSILRVAVYEMKYMEEIPHNVTINEAIEIA 107

Query: 135 HDFFYGDEPKFINAVLDKV 153
             F   +  +FIN VL  +
Sbjct: 108 KTFGDEESRRFINGVLSNI 126


>gi|312883802|ref|ZP_07743521.1| transcription antitermination protein NusB [Vibrio caribbenthicus
           ATCC BAA-2122]
 gi|309368551|gb|EFP96084.1| transcription antitermination protein NusB [Vibrio caribbenthicus
           ATCC BAA-2122]
          Length = 155

 Score =  149 bits (377), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 34/140 (24%), Positives = 61/140 (43%), Gaps = 5/140 (3%)

Query: 24  VQALYQIDIIGCSTTEIISEYETYRFCADTE---LDVESVYLHVDLEWFRVIIHGVMDRK 80
           +QA+Y   I   +   I  ++ +     + E    +        D+ +FR ++ GV+   
Sbjct: 18  LQAIYSWQITKENVANIEEQFLSGDKYDEEEHHAQEPALSTPDTDVAYFRDLLTGVVLSH 77

Query: 81  QHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYG 140
             +D  I            LDM+  ++LR  + E+     VP +V+I+E + +A  F   
Sbjct: 78  TELDSKIRPYTAR--PMQDLDMMELALLRLAMYEMTRREDVPYKVVINEAIELAKVFAAE 135

Query: 141 DEPKFINAVLDKVSRKEEIK 160
           +  KF+N VLDK +     K
Sbjct: 136 ESHKFVNGVLDKAAPHVRKK 155


>gi|300022490|ref|YP_003755101.1| NusB antitermination factor [Hyphomicrobium denitrificans ATCC
           51888]
 gi|299524311|gb|ADJ22780.1| NusB antitermination factor [Hyphomicrobium denitrificans ATCC
           51888]
          Length = 170

 Score =  149 bits (377), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 52/133 (39%), Positives = 79/133 (59%), Gaps = 3/133 (2%)

Query: 24  VQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHI 83
           VQALYQ+D+ G    ++I+E+   R   D   + + +    D  +F  I+  V+ R++ I
Sbjct: 23  VQALYQMDMAGTDLNDVIAEFLNERLSGD---NRDEMLAGADRVFFADILRAVVRRQREI 79

Query: 84  DLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEP 143
           D +I   L   W   R+D IL +ILR GV EL++ + VP  V ISEYV +A  FF  +EP
Sbjct: 80  DPMIDEQLAVGWRLVRVDSILRAILRGGVAELVDRYDVPARVAISEYVNVARVFFDEEEP 139

Query: 144 KFINAVLDKVSRK 156
           + +N VLDK++R+
Sbjct: 140 RVVNGVLDKLARR 152


>gi|261253734|ref|ZP_05946307.1| transcription termination protein NusB [Vibrio orientalis CIP
           102891]
 gi|260937125|gb|EEX93114.1| transcription termination protein NusB [Vibrio orientalis CIP
           102891]
          Length = 155

 Score =  149 bits (377), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 34/140 (24%), Positives = 61/140 (43%), Gaps = 5/140 (3%)

Query: 24  VQALYQIDIIGCSTTEIISEYETYRFCADTEL---DVESVYLHVDLEWFRVIIHGVMDRK 80
           +QA+Y   I   +   I  ++ +     + E    +        D+ +FR ++ GV+   
Sbjct: 18  LQAIYSWQITKENVATIEEQFLSGGKYDEEEHHASEPALSAPDTDVAYFRDLLTGVVLSH 77

Query: 81  QHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYG 140
             +D  I            LDM+  ++LR  + E+     VP +V+I+E + +A  F   
Sbjct: 78  TELDSKIRPYTAR--PMQDLDMMELALLRLAMYEMTRREDVPYKVVINEAIELAKVFAAE 135

Query: 141 DEPKFINAVLDKVSRKEEIK 160
           +  KF+N VLDK +     K
Sbjct: 136 ESHKFVNGVLDKAAPHVRKK 155


>gi|114771638|ref|ZP_01449042.1| transcription antitermination factor NusB [alpha proteobacterium
           HTCC2255]
 gi|114547710|gb|EAU50600.1| transcription antitermination factor NusB [alpha proteobacterium
           HTCC2255]
          Length = 151

 Score =  149 bits (377), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 48/162 (29%), Positives = 83/162 (51%), Gaps = 13/162 (8%)

Query: 1   MTIQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESV 60
           MT   +KK +K       +RL AVQAL+Q++       E+  ++  +RF A  E +    
Sbjct: 1   MT---SKKQMK-----SASRLYAVQALFQMEASEQGMNEVRDQFVNHRFGATLEGEE--- 49

Query: 61  YLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHS 120
           Y+  ++E F  ++   ++++  ID +    L  KW   R+D  L ++ R    E I    
Sbjct: 50  YVEGNVELFEQLLFTAVNQQAAIDQMTDRALVAKWPIDRIDPTLRALFRTAGAEFI-IDD 108

Query: 121 VPVEVIISEYVCIAHDFF-YGDEPKFINAVLDKVSRKEEIKR 161
            P +V I E+V +A  FF  G+E +F+NA+LD ++R+    +
Sbjct: 109 TPPKVAIVEFVDVAKAFFPDGNETRFVNAILDHMAREVHPDK 150


>gi|21241522|ref|NP_641104.1| transcription antitermination protein NusB [Xanthomonas axonopodis
           pv. citri str. 306]
 gi|24638072|sp|Q8PPD5|NUSB_XANAC RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|21106870|gb|AAM35640.1| transcription termination factor NusB [Xanthomonas axonopodis pv.
           citri str. 306]
          Length = 159

 Score =  149 bits (377), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 37/143 (25%), Positives = 63/143 (44%), Gaps = 16/143 (11%)

Query: 25  QALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHID 84
           QA+Y   I G    ++I+++             E  +   DL +F  ++ GV+  +  +D
Sbjct: 30  QAVYAWQISGGFAKQVIAQFAH-----------EQAHEVADLAYFENLVEGVLSNRAELD 78

Query: 85  LLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPK 144
             ++  L    S   +D I  ++LR    EL+    VP  V+I+E +  A  F       
Sbjct: 79  TALTPYLDR--SVEEVDAIERAVLRLAAYELLYRQDVPYRVVINEAIETAKRFGSEHGHT 136

Query: 145 FINAVLDKVS---RKEEIKRSGC 164
           ++N VLD+ +   RK E   SG 
Sbjct: 137 YVNGVLDRAAVEWRKVESGASGA 159


>gi|302879544|ref|YP_003848108.1| NusB antitermination factor [Gallionella capsiferriformans ES-2]
 gi|302582333|gb|ADL56344.1| NusB antitermination factor [Gallionella capsiferriformans ES-2]
          Length = 157

 Score =  149 bits (377), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 39/144 (27%), Positives = 64/144 (44%), Gaps = 13/144 (9%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           R  AR  A+Q +YQ  + G   TEI +            L  E      D   +  ++ G
Sbjct: 19  RHRARELALQGVYQWRVSGSDATEIEA-----------HLQGEKNLGRYDKPMYSKLLRG 67

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
           V+  ++ + +L++  L    +   L  +  S+L     EL     VP +V+I+E V +A 
Sbjct: 68  VLANQEELQILLTPYLDR--ALDELSTVEFSVLLLAGFELAHQLDVPYKVVINEAVELAK 125

Query: 136 DFFYGDEPKFINAVLDKVSRKEEI 159
            F   D  K++N VLDK++ K   
Sbjct: 126 TFGGTDGHKYVNGVLDKLAPKVRA 149


>gi|163941940|ref|YP_001646824.1| transcription antitermination protein NusB [Bacillus
           weihenstephanensis KBAB4]
 gi|229013400|ref|ZP_04170537.1| N utilization substance protein B [Bacillus mycoides DSM 2048]
 gi|229061872|ref|ZP_04199202.1| N utilization substance protein B [Bacillus cereus AH603]
 gi|229620056|sp|A9VGW4|NUSB_BACWK RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|163864137|gb|ABY45196.1| NusB antitermination factor [Bacillus weihenstephanensis KBAB4]
 gi|228717433|gb|EEL69101.1| N utilization substance protein B [Bacillus cereus AH603]
 gi|228747812|gb|EEL97678.1| N utilization substance protein B [Bacillus mycoides DSM 2048]
          Length = 130

 Score =  149 bits (377), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 42/139 (30%), Positives = 63/139 (45%), Gaps = 14/139 (10%)

Query: 15  RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74
           +R  AR  A+QALYQ+DI G    ++  E          E             +   ++ 
Sbjct: 2   KRRTARERAMQALYQMDITGELEPKVAVENTLDEGEETNE-------------FLESLVV 48

Query: 75  GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134
           G +D K+ ID  I   L +KW   R+ ++  SILR  V E+     +P  V I+E + IA
Sbjct: 49  GFVDNKEEIDAAIRQNL-KKWKLERISIVDRSILRVAVCEMKYMEEIPHNVTINEAIEIA 107

Query: 135 HDFFYGDEPKFINAVLDKV 153
             F   +  +FIN VL  +
Sbjct: 108 KTFGDEESRRFINGVLSNI 126


>gi|21230173|ref|NP_636090.1| transcription antitermination protein NusB [Xanthomonas campestris
           pv. campestris str. ATCC 33913]
 gi|66769837|ref|YP_244599.1| transcription antitermination protein NusB [Xanthomonas campestris
           pv. campestris str. 8004]
 gi|188993052|ref|YP_001905062.1| transcription antitermination protein NusB [Xanthomonas campestris
           pv. campestris str. B100]
 gi|24638071|sp|Q8PCM6|NUSB_XANCP RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|81304209|sp|Q4UQU4|NUSB_XANC8 RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|229620372|sp|B0RVD1|NUSB_XANCB RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|21111708|gb|AAM40014.1| transcription termination factor NusB [Xanthomonas campestris pv.
           campestris str. ATCC 33913]
 gi|66575169|gb|AAY50579.1| transcription termination factor NusB [Xanthomonas campestris pv.
           campestris str. 8004]
 gi|167734812|emb|CAP53022.1| antitermination factor, NusB family [Xanthomonas campestris pv.
           campestris]
          Length = 159

 Score =  149 bits (377), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 36/143 (25%), Positives = 62/143 (43%), Gaps = 16/143 (11%)

Query: 25  QALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHID 84
           QA+Y   I G    ++I+++             E  +   DL +F  ++ GV+  +  +D
Sbjct: 30  QAVYAWQIAGGFAKQVIAQFAH-----------EQAHEVADLAYFESLVEGVLSNRSELD 78

Query: 85  LLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPK 144
             ++  L        +D I  ++LR    EL+    VP  V+I+E +  A  F       
Sbjct: 79  TALTPYLDRG--VEEVDAIERAVLRLAAYELLYRQDVPYRVVINEAIETAKRFGSEHGHT 136

Query: 145 FINAVLDKVS---RKEEIKRSGC 164
           ++N VLD+ +   RK E   SG 
Sbjct: 137 YVNGVLDRAAVEWRKMESGASGA 159


>gi|311030979|ref|ZP_07709069.1| transcription antitermination protein NusB [Bacillus sp. m3-13]
          Length = 133

 Score =  149 bits (377), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 41/139 (29%), Positives = 66/139 (47%), Gaps = 15/139 (10%)

Query: 15  RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74
           +R  +R  A+QA++Q+D+   +  E I+         D              ++   I+ 
Sbjct: 2   KRSESRKKALQAIFQMDLSDIAPDEAITNVLEEGERPD--------------DFLSSIVF 47

Query: 75  GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134
           G  + ++ ID  + S L EKWS  RL  +  +ILR  V E++    +PV V ++E + +A
Sbjct: 48  GTKEHQEEIDSTLKSHL-EKWSLDRLGTVDRTILRMTVFEMMFVEEIPVNVSMNEAIELA 106

Query: 135 HDFFYGDEPKFINAVLDKV 153
             F       FINAVL KV
Sbjct: 107 KTFGDDKSSGFINAVLSKV 125


>gi|260775291|ref|ZP_05884188.1| transcription termination protein NusB [Vibrio coralliilyticus ATCC
           BAA-450]
 gi|260608472|gb|EEX34637.1| transcription termination protein NusB [Vibrio coralliilyticus ATCC
           BAA-450]
          Length = 155

 Score =  149 bits (377), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 35/140 (25%), Positives = 62/140 (44%), Gaps = 5/140 (3%)

Query: 24  VQALYQIDIIGCSTTEIISEYETYRFCADTE---LDVESVYLHVDLEWFRVIIHGVMDRK 80
           +QA+Y   I   +   I  ++ +     + E    +   V    D+ +FR ++ GV+   
Sbjct: 18  LQAIYSWQITKENVATIEEQFLSGGKYDEEEHHAAEPALVAPDTDVAYFRDLLTGVVLSH 77

Query: 81  QHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYG 140
             +D  I            LDM+  ++LR  + E+     VP +V+I+E + +A  F   
Sbjct: 78  TELDSKIRPYTAR--PMQDLDMMELALLRLAMYEMTRREDVPYKVVINEAIELAKVFAAE 135

Query: 141 DEPKFINAVLDKVSRKEEIK 160
           +  KF+N VLDK +     K
Sbjct: 136 ESHKFVNGVLDKAAPHVRKK 155


>gi|297569245|ref|YP_003690589.1| NusB antitermination factor [Desulfurivibrio alkaliphilus AHT2]
 gi|296925160|gb|ADH85970.1| NusB antitermination factor [Desulfurivibrio alkaliphilus AHT2]
          Length = 138

 Score =  149 bits (377), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 41/140 (29%), Positives = 64/140 (45%), Gaps = 12/140 (8%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           R  +R  A+QALYQ D+   S  + +        C + E+  ++      L +   ++ G
Sbjct: 4   RRKSRELALQALYQADMSNVSALDTLP-----VLCENFEVSRKA------LPYGEGLVGG 52

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
           V+     ID +I    +  W  SR+  I  +I+R  V E      VP  V I+E + +A 
Sbjct: 53  VVANLAAIDRII-EAGSAHWRVSRMSCIDRNIIRIAVYEFNFAADVPAGVAINEAIELAK 111

Query: 136 DFFYGDEPKFINAVLDKVSR 155
            F   D P FIN VLD + +
Sbjct: 112 RFGSEDSPAFINGVLDAIRK 131


>gi|222055768|ref|YP_002538130.1| NusB antitermination factor [Geobacter sp. FRC-32]
 gi|254772641|sp|B9M1E7|NUSB_GEOSF RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|221565057|gb|ACM21029.1| NusB antitermination factor [Geobacter sp. FRC-32]
          Length = 145

 Score =  149 bits (377), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 39/142 (27%), Positives = 66/142 (46%), Gaps = 6/142 (4%)

Query: 14  HRRGIARLAAVQALYQIDIIGCSTTEIISE-YETYRFCADTELDVESVYLHVDLEWFRVI 72
             R   R  A+QALY  D      T  + +  + +   ++  LDV          +   +
Sbjct: 2   SSRREGRELALQALYSSDAESLGGTFALKKIMDNFADGSEPSLDVHGRSF----TFATEL 57

Query: 73  IHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVC 132
           ++GV+   + ID  I    ++ WS +R+  +  +ILR  V EL     +P  V I+E + 
Sbjct: 58  VNGVLSNSEAIDRKIEEK-SKNWSIARMAKVDLNILRLAVFELFYRPDIPKNVTINEAIE 116

Query: 133 IAHDFFYGDEPKFINAVLDKVS 154
           +A  F   D P FIN +LD+++
Sbjct: 117 VAKKFGAEDSPAFINGILDEIA 138


>gi|326317709|ref|YP_004235381.1| NusB antitermination factor [Acidovorax avenae subsp. avenae ATCC
           19860]
 gi|323374545|gb|ADX46814.1| NusB antitermination factor [Acidovorax avenae subsp. avenae ATCC
           19860]
          Length = 186

 Score =  149 bits (377), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 42/171 (24%), Positives = 72/171 (42%), Gaps = 17/171 (9%)

Query: 2   TIQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVY 61
           T    +K    S  R  +R  A+QALYQ  I+G +    I  +              S +
Sbjct: 26  TSTGARKAASKSA-RSRSRAFALQALYQ-HIVGRNEATAIDVF----------TRDLSGF 73

Query: 62  LHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSV 121
              D   +  ++HG ++  + +D LI+  L    +   +  I  + +  GV E   C  V
Sbjct: 74  HKADAAHYDALLHGCIENAETLDALITPKLDR--TLEEISPIEHATMWIGVYEFQHCLDV 131

Query: 122 PVEVIISEYVCIAHDFFYGDEPKFINAVLDKVS---RKEEIKRSGCVSAIT 169
           P  V+I+E V +A +F   D  K++N VL+ ++   R  E+       +  
Sbjct: 132 PWRVVINECVELAKEFGGTDGHKYVNGVLNGLAPTLRAAEVAADRTPGSAA 182


>gi|221633595|ref|YP_002522821.1| transcription antitermination factor NusB [Thermomicrobium roseum
           DSM 5159]
 gi|221156287|gb|ACM05414.1| transcription antitermination factor NusB [Thermomicrobium roseum
           DSM 5159]
          Length = 168

 Score =  149 bits (376), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 34/146 (23%), Positives = 68/146 (46%), Gaps = 12/146 (8%)

Query: 9   DLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEW 68
           D+ L+  R  AR+ A+Q LY++D+   S  E++  + +           ++        +
Sbjct: 27  DMSLARIRRQARILALQILYEVDVANHSLEEVLERHRS-----------QASIAQPVRRY 75

Query: 69  FRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIIS 128
              ++ GV   ++ ID +I+      +   +L  +  +ILR  + EL+    VP++  I+
Sbjct: 76  AERLVTGVWADRERIDRMIAEA-APAFPVDQLPPVDRNILRIAIYELLHEPDVPLKAAIN 134

Query: 129 EYVCIAHDFFYGDEPKFINAVLDKVS 154
           E V IA  +      +F+N VL  ++
Sbjct: 135 EAVEIAKQYGGESSSRFVNGVLGTIA 160


>gi|30264257|ref|NP_846634.1| transcription antitermination protein NusB [Bacillus anthracis str.
           Ames]
 gi|47529700|ref|YP_021049.1| transcription antitermination protein NusB [Bacillus anthracis str.
           'Ames Ancestor']
 gi|47569441|ref|ZP_00240122.1| transcription antitermination factor nusB [Bacillus cereus G9241]
 gi|49187084|ref|YP_030336.1| transcription antitermination protein NusB [Bacillus anthracis str.
           Sterne]
 gi|49478572|ref|YP_038243.1| transcription antitermination protein NusB [Bacillus thuringiensis
           serovar konkukian str. 97-27]
 gi|52141314|ref|YP_085515.1| transcription antitermination protein NusB [Bacillus cereus E33L]
 gi|65321567|ref|ZP_00394526.1| COG0781: Transcription termination factor [Bacillus anthracis str.
           A2012]
 gi|118479373|ref|YP_896524.1| transcription antitermination protein NusB [Bacillus thuringiensis
           str. Al Hakam]
 gi|165873007|ref|ZP_02217629.1| N utilization substance protein B [Bacillus anthracis str. A0488]
 gi|167634649|ref|ZP_02392969.1| N utilization substance protein B [Bacillus anthracis str. A0442]
 gi|167638629|ref|ZP_02396905.1| N utilization substance protein B [Bacillus anthracis str. A0193]
 gi|170687525|ref|ZP_02878742.1| N utilization substance protein B [Bacillus anthracis str. A0465]
 gi|170709044|ref|ZP_02899474.1| N utilization substance protein B [Bacillus anthracis str. A0389]
 gi|177654829|ref|ZP_02936586.1| N utilization substance protein B [Bacillus anthracis str. A0174]
 gi|190565849|ref|ZP_03018768.1| N utilization substance protein B [Bacillus anthracis
           Tsiankovskii-I]
 gi|196034887|ref|ZP_03102294.1| N utilization substance protein B [Bacillus cereus W]
 gi|196041593|ref|ZP_03108885.1| N utilization substance protein B [Bacillus cereus NVH0597-99]
 gi|196046394|ref|ZP_03113620.1| N utilization substance protein B [Bacillus cereus 03BB108]
 gi|206976312|ref|ZP_03237220.1| N utilization substance protein B [Bacillus cereus H3081.97]
 gi|217961672|ref|YP_002340242.1| transcription antitermination protein NusB [Bacillus cereus AH187]
 gi|218905318|ref|YP_002453152.1| N utilization substance protein B [Bacillus cereus AH820]
 gi|222097628|ref|YP_002531685.1| transcription antitermination protein nusb [Bacillus cereus Q1]
 gi|225866164|ref|YP_002751542.1| N utilization substance protein B [Bacillus cereus 03BB102]
 gi|227816958|ref|YP_002816967.1| N utilization substance protein B [Bacillus anthracis str. CDC 684]
 gi|228916818|ref|ZP_04080383.1| N utilization substance protein B [Bacillus thuringiensis serovar
           pulsiensis BGSC 4CC1]
 gi|228929228|ref|ZP_04092255.1| N utilization substance protein B [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
 gi|228935505|ref|ZP_04098323.1| N utilization substance protein B [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
 gi|228947899|ref|ZP_04110186.1| N utilization substance protein B [Bacillus thuringiensis serovar
           monterrey BGSC 4AJ1]
 gi|229031831|ref|ZP_04187819.1| N utilization substance protein B [Bacillus cereus AH1271]
 gi|229123702|ref|ZP_04252897.1| N utilization substance protein B [Bacillus cereus 95/8201]
 gi|229604290|ref|YP_002868476.1| N utilization substance protein B [Bacillus anthracis str. A0248]
 gi|254683946|ref|ZP_05147806.1| transcription antitermination protein NusB [Bacillus anthracis str.
           CNEVA-9066]
 gi|254721781|ref|ZP_05183570.1| transcription antitermination protein NusB [Bacillus anthracis str.
           A1055]
 gi|254736294|ref|ZP_05194000.1| transcription antitermination protein NusB [Bacillus anthracis str.
           Western North America USA6153]
 gi|254741332|ref|ZP_05199019.1| transcription antitermination protein NusB [Bacillus anthracis str.
           Kruger B]
 gi|254754034|ref|ZP_05206069.1| transcription antitermination protein NusB [Bacillus anthracis str.
           Vollum]
 gi|254757905|ref|ZP_05209932.1| transcription antitermination protein NusB [Bacillus anthracis str.
           Australia 94]
 gi|301055675|ref|YP_003793886.1| transcription antitermination protein NusB [Bacillus anthracis CI]
 gi|39931872|sp|Q81M49|NUSB_BACAN RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|81613591|sp|Q6HDY3|NUSB_BACHK RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|81686283|sp|Q635A2|NUSB_BACCZ RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|166215664|sp|A0RIH4|NUSB_BACAH RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|226737438|sp|B7JM33|NUSB_BACC0 RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|226738895|sp|B7HNU5|NUSB_BACC7 RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|254772611|sp|C3P7W1|NUSB_BACAA RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|254772612|sp|C3LJV6|NUSB_BACAC RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|254772613|sp|C1ERQ5|NUSB_BACC3 RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|254772614|sp|B9IXH5|NUSB_BACCQ RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|30258902|gb|AAP28120.1| N utilization substance protein B [Bacillus anthracis str. Ames]
 gi|47504848|gb|AAT33524.1| N utilization substance protein B [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|47553856|gb|EAL12226.1| transcription antitermination factor nusB [Bacillus cereus G9241]
 gi|49181011|gb|AAT56387.1| N utilization substance protein B [Bacillus anthracis str. Sterne]
 gi|49330128|gb|AAT60774.1| N utilization substance protein B [Bacillus thuringiensis serovar
           konkukian str. 97-27]
 gi|51974783|gb|AAU16333.1| N utilization substance protein B [Bacillus cereus E33L]
 gi|118418598|gb|ABK87017.1| N utilization substance protein B [Bacillus thuringiensis str. Al
           Hakam]
 gi|164711290|gb|EDR16845.1| N utilization substance protein B [Bacillus anthracis str. A0488]
 gi|167513477|gb|EDR88847.1| N utilization substance protein B [Bacillus anthracis str. A0193]
 gi|167530101|gb|EDR92836.1| N utilization substance protein B [Bacillus anthracis str. A0442]
 gi|170126071|gb|EDS94968.1| N utilization substance protein B [Bacillus anthracis str. A0389]
 gi|170668720|gb|EDT19466.1| N utilization substance protein B [Bacillus anthracis str. A0465]
 gi|172080490|gb|EDT65576.1| N utilization substance protein B [Bacillus anthracis str. A0174]
 gi|190562768|gb|EDV16734.1| N utilization substance protein B [Bacillus anthracis
           Tsiankovskii-I]
 gi|195992426|gb|EDX56387.1| N utilization substance protein B [Bacillus cereus W]
 gi|196022864|gb|EDX61545.1| N utilization substance protein B [Bacillus cereus 03BB108]
 gi|196027581|gb|EDX66196.1| N utilization substance protein B [Bacillus cereus NVH0597-99]
 gi|206745508|gb|EDZ56907.1| N utilization substance protein B [Bacillus cereus H3081.97]
 gi|217067907|gb|ACJ82157.1| N utilization substance protein B [Bacillus cereus AH187]
 gi|218539371|gb|ACK91769.1| N utilization substance protein B [Bacillus cereus AH820]
 gi|221241686|gb|ACM14396.1| N utilization substance protein B [Bacillus cereus Q1]
 gi|225785990|gb|ACO26207.1| N utilization substance protein B [Bacillus cereus 03BB102]
 gi|227003150|gb|ACP12893.1| N utilization substance protein B [Bacillus anthracis str. CDC 684]
 gi|228659837|gb|EEL15482.1| N utilization substance protein B [Bacillus cereus 95/8201]
 gi|228729449|gb|EEL80438.1| N utilization substance protein B [Bacillus cereus AH1271]
 gi|228811886|gb|EEM58220.1| N utilization substance protein B [Bacillus thuringiensis serovar
           monterrey BGSC 4AJ1]
 gi|228824257|gb|EEM70071.1| N utilization substance protein B [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
 gi|228830518|gb|EEM76128.1| N utilization substance protein B [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
 gi|228843005|gb|EEM88088.1| N utilization substance protein B [Bacillus thuringiensis serovar
           pulsiensis BGSC 4CC1]
 gi|229268698|gb|ACQ50335.1| N utilization substance protein B [Bacillus anthracis str. A0248]
 gi|300377844|gb|ADK06748.1| transcription antitermination protein NusB [Bacillus cereus biovar
           anthracis str. CI]
 gi|324328096|gb|ADY23356.1| transcription antitermination protein NusB [Bacillus thuringiensis
           serovar finitimus YBT-020]
          Length = 130

 Score =  149 bits (376), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 41/139 (29%), Positives = 63/139 (45%), Gaps = 14/139 (10%)

Query: 15  RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74
           +R  AR  A+QALYQ+DI G    ++  E          E             +   ++ 
Sbjct: 2   KRRTARERAMQALYQMDITGELEPKVAVENTLDEGEETNE-------------FLESLVV 48

Query: 75  GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134
           G ++ K+ ID  I   L +KW   R+ ++  SILR  V E+     +P  V I+E + IA
Sbjct: 49  GFVENKEVIDEAIRQNL-KKWKLERISIVDRSILRVAVYEMKYMEEIPHNVTINEAIEIA 107

Query: 135 HDFFYGDEPKFINAVLDKV 153
             F   +  +FIN VL  +
Sbjct: 108 KTFGDEESRRFINGVLSNI 126


>gi|229093241|ref|ZP_04224359.1| N utilization substance protein B [Bacillus cereus Rock3-42]
 gi|228690215|gb|EEL44009.1| N utilization substance protein B [Bacillus cereus Rock3-42]
          Length = 130

 Score =  149 bits (376), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 41/139 (29%), Positives = 63/139 (45%), Gaps = 14/139 (10%)

Query: 15  RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74
           +R  AR  A+QALYQ+DI G    ++  E          E             +   ++ 
Sbjct: 2   KRRTARERAMQALYQMDITGELEPKVAVENTLDEGEETNE-------------FLESLVI 48

Query: 75  GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134
           G ++ K+ ID  I   L +KW   R+ ++  SILR  V E+     +P  V I+E + IA
Sbjct: 49  GFVENKEVIDEAIRQNL-KKWKLERISIVDRSILRVAVYEMKYMEEIPHNVTINEAIEIA 107

Query: 135 HDFFYGDEPKFINAVLDKV 153
             F   +  +FIN VL  +
Sbjct: 108 KTFGDEESRRFINGVLSNI 126


>gi|332992370|gb|AEF02425.1| transcription antitermination protein NusB [Alteromonas sp. SN2]
          Length = 140

 Score =  149 bits (376), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 46/146 (31%), Positives = 65/146 (44%), Gaps = 14/146 (9%)

Query: 10  LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF 69
           +K+S RR  AR  A+Q +Y   +      +I           +  L   +    VD+ +F
Sbjct: 1   MKVSARR-KARELALQGIYSWQMSHNDIQQI-----------ELALATSNDMKKVDMAYF 48

Query: 70  RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISE 129
           + ++ GV     H+D  I   L        LD I  +ILR   LEL E   VP  VII+E
Sbjct: 49  QALLRGVAHSASHLDTTIKPYLGR--LPEELDAIEKAILRIATLELTERKDVPYRVIINE 106

Query: 130 YVCIAHDFFYGDEPKFINAVLDKVSR 155
            + +A  F   +  KFIN  LDK  R
Sbjct: 107 AIELAKSFGAEESHKFINGALDKAVR 132


>gi|42783301|ref|NP_980548.1| transcription antitermination protein NusB [Bacillus cereus ATCC
           10987]
 gi|81568850|sp|Q731B1|NUSB_BACC1 RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|42739229|gb|AAS43156.1| N utilization substance protein B [Bacillus cereus ATCC 10987]
          Length = 130

 Score =  149 bits (376), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 42/139 (30%), Positives = 63/139 (45%), Gaps = 14/139 (10%)

Query: 15  RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74
           +R  AR  A+QALYQ+DI G    +I  E          E             +   ++ 
Sbjct: 2   KRRTARERAMQALYQMDITGELEPKIAVENTLDEGEETNE-------------FLESLVV 48

Query: 75  GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134
           G ++ K+ ID  I   L +KW   R+ ++  SILR  V E+     +P  V I+E + IA
Sbjct: 49  GFVENKEVIDEAIRQNL-KKWKLERISIVDRSILRVAVYEMKYMEEIPHNVTINEAIEIA 107

Query: 135 HDFFYGDEPKFINAVLDKV 153
             F   +  +FIN VL  +
Sbjct: 108 KTFGDEESRRFINGVLSNI 126


>gi|170693624|ref|ZP_02884782.1| NusB antitermination factor [Burkholderia graminis C4D1M]
 gi|170141406|gb|EDT09576.1| NusB antitermination factor [Burkholderia graminis C4D1M]
          Length = 144

 Score =  149 bits (376), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 42/150 (28%), Positives = 64/150 (42%), Gaps = 15/150 (10%)

Query: 10  LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF 69
           +K + RR   R  A Q LYQ  + G    EI           D +L     +   D E  
Sbjct: 1   MKSARRRS--RELATQGLYQWLLSGSPGGEI-----------DAQLRGAQGFDKADHEHL 47

Query: 70  RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISE 129
             I+HGV+   + +   I+ CL       +L  +  ++L     EL     +P  V+I+E
Sbjct: 48  DAILHGVIRDSEALSADIAPCLDR--PIEQLSPVERAVLLVAAFELKNHVDIPYRVVINE 105

Query: 130 YVCIAHDFFYGDEPKFINAVLDKVSRKEEI 159
            V +A  F   D  K++N VLDK++ K   
Sbjct: 106 AVELAKTFGGVDGYKYVNGVLDKLAAKLRA 135


>gi|83648594|ref|YP_437029.1| transcription antitermination protein NusB [Hahella chejuensis KCTC
           2396]
 gi|119390775|sp|Q2S9S0|NUSB_HAHCH RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|83636637|gb|ABC32604.1| transcription antitermination factor NusB [Hahella chejuensis KCTC
           2396]
          Length = 149

 Score =  149 bits (376), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 45/146 (30%), Positives = 75/146 (51%), Gaps = 13/146 (8%)

Query: 11  KLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFR 70
           K   +R  AR  A+QALYQ  + G S ++I +E+            V++    VD + F+
Sbjct: 3   KAMEKRRAARKLALQALYQWRVAGASISQIEAEFA-----------VDNDLQQVDRDLFK 51

Query: 71  VIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEY 130
            +++GV      +D L+   +  K   + +D +  S++R G  EL     VP  V+I+E 
Sbjct: 52  AVLYGVPSSVSELDALLQPFVDRK--LTDVDPVELSLIRMGAFELRSRIEVPYRVVINEA 109

Query: 131 VCIAHDFFYGDEPKFINAVLDKVSRK 156
           V +A  F   D  KF+N+VLDK++ +
Sbjct: 110 VELAKQFGGTDGHKFVNSVLDKLAPQ 135


>gi|319786237|ref|YP_004145712.1| NusB antitermination factor [Pseudoxanthomonas suwonensis 11-1]
 gi|317464749|gb|ADV26481.1| NusB antitermination factor [Pseudoxanthomonas suwonensis 11-1]
          Length = 156

 Score =  149 bits (376), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 36/142 (25%), Positives = 67/142 (47%), Gaps = 16/142 (11%)

Query: 24  VQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHI 83
           +QA+Y   I G +  ++I+++             E  +   DL +F  ++ GV+  +  +
Sbjct: 24  LQAIYAWQISGGNAQQVIAQFAH-----------EQAHEIADLTYFEDLVTGVLSHRASL 72

Query: 84  DLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEP 143
           D  ++  L    +   +D I  ++LR    EL+    VP  V+I+E + IA  F      
Sbjct: 73  DEALAPHLDR--AVEEVDAIERAVLRLAAYELLHRVDVPYRVVINEAIEIAKRFGSEHGH 130

Query: 144 KFINAVLDKVS---RKEEIKRS 162
            ++N VLD+ S   R+ E++ S
Sbjct: 131 TYVNGVLDRASAQWRQAEVQAS 152


>gi|302517963|ref|ZP_07270305.1| transcription antitermination factor NusB [Streptomyces sp. SPB78]
 gi|302426858|gb|EFK98673.1| transcription antitermination factor NusB [Streptomyces sp. SPB78]
          Length = 144

 Score =  149 bits (376), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 32/138 (23%), Positives = 62/138 (44%), Gaps = 9/138 (6%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           R  AR  A Q L++ D  G     +++++  +      +  V         E+   ++ G
Sbjct: 4   RNTARKRAFQILFEADQRGTDVLTVLADWVRHSRNDTQQPPVS--------EYTMELVEG 55

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
             +  + ID +I+   +  W   R+ ++  +I+R G  EL+     P  V++ E V +A 
Sbjct: 56  YAEHARRIDEVIAKY-SVDWPLDRMPVVDRNIVRLGAHELVWVDGTPDAVVMDEAVELAK 114

Query: 136 DFFYGDEPKFINAVLDKV 153
           +F   D P F+N +L + 
Sbjct: 115 EFSTDDSPAFVNGLLGRF 132


>gi|15827185|ref|NP_301448.1| transcription antitermination protein NusB [Mycobacterium leprae
           TN]
 gi|221229663|ref|YP_002503079.1| transcription antitermination protein NusB [Mycobacterium leprae
           Br4923]
 gi|18202776|sp|Q9CCR9|NUSB_MYCLE RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|254772649|sp|B8ZUK7|NUSB_MYCLB RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|13092733|emb|CAC30031.1| putative transcription termination protein [Mycobacterium leprae]
 gi|219932770|emb|CAR70616.1| putative transcription termination protein [Mycobacterium leprae
           Br4923]
          Length = 190

 Score =  149 bits (376), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 45/138 (32%), Positives = 65/138 (47%), Gaps = 9/138 (6%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           R  AR  AV  L++ +    S  EII   E     A ++LDV  ++      +  V+  G
Sbjct: 8   RHQARKRAVDLLFEAEARDLSPLEII---EVRSALAKSKLDVAPLH-----PYTVVVAQG 59

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
           V +    ID LI S L + W   RL  +  +ILR  + EL+    VP  V + E V +A 
Sbjct: 60  VSEHTARIDELIISHL-QGWKLDRLPAVDRAILRVSIWELLYADDVPEPVAVDEAVELAK 118

Query: 136 DFFYGDEPKFINAVLDKV 153
           +    D P F+N +L KV
Sbjct: 119 ELSTDDSPGFVNGLLGKV 136


>gi|313889626|ref|ZP_07823269.1| transcription antitermination factor NusB [Streptococcus
           pseudoporcinus SPIN 20026]
 gi|313121923|gb|EFR45019.1| transcription antitermination factor NusB [Streptococcus
           pseudoporcinus SPIN 20026]
          Length = 143

 Score =  149 bits (376), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 35/144 (24%), Positives = 64/144 (44%), Gaps = 7/144 (4%)

Query: 14  HRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVII 73
           + R   R  A QAL+ ++  G          E+ RF  D +   +  +      +   ++
Sbjct: 7   NSRRDLRERAFQALFNMEHGGDFL-------ESSRFAYDYDKVSDQDHPLDVPAFLLTLV 59

Query: 74  HGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCI 133
           +GV + K+ +D +I   L + WS  RL +   ++LR G+ E+      P  V ++E + I
Sbjct: 60  NGVNNHKEELDAIIKENLKKGWSIERLTLSDRTMLRLGLYEIKYFDETPDRVALNEIIEI 119

Query: 134 AHDFFYGDEPKFINAVLDKVSRKE 157
           A  +      KFIN +L +  +  
Sbjct: 120 AKKYSDETSAKFINGLLSQFVKDN 143


>gi|329938937|ref|ZP_08288311.1| Transcription termination protein NusB [Streptomyces
           griseoaurantiacus M045]
 gi|329301822|gb|EGG45715.1| Transcription termination protein NusB [Streptomyces
           griseoaurantiacus M045]
          Length = 142

 Score =  149 bits (376), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 36/147 (24%), Positives = 67/147 (45%), Gaps = 12/147 (8%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           R  AR  A Q L++ D  G     +++++ +       +  V         E+   ++ G
Sbjct: 4   RNTARKRAFQILFEGDQRGADVLTVLADWVSLSRSDTRQPPVS--------EYTMQLVEG 55

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
             +    ID L++      W+  R+ ++  +ILR G  ELI     P  V++ E V +A 
Sbjct: 56  YAEHVTRIDELLAQYAV-GWTLDRMPVVDRNILRLGAYELIWVDETPDAVVLDEMVQLAK 114

Query: 136 DFFYGDEPKFINAVLDKVSRKEEIKRS 162
           +F   + P F+N +L ++   +E+K S
Sbjct: 115 EFSTDESPGFVNGLLGRL---KELKPS 138


>gi|23099336|ref|NP_692802.1| transcription antitermination protein NusB [Oceanobacillus
           iheyensis HTE831]
 gi|32171652|sp|Q8EQ42|NUSB_OCEIH RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|22777565|dbj|BAC13837.1| transcriptional terminator [Oceanobacillus iheyensis HTE831]
          Length = 126

 Score =  149 bits (376), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 41/139 (29%), Positives = 64/139 (46%), Gaps = 16/139 (11%)

Query: 15  RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74
            R  AR  A Q L+Q+DI      E++   +                      + R ++ 
Sbjct: 2   NRHKAREKAFQVLFQLDINETELEEVMETLKEKERYDV---------------FLRSLVE 46

Query: 75  GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134
           GV+  K  ID  IS+ L EKW+  R+  +  +ILR  +LE++    +P  V I+E + +A
Sbjct: 47  GVIQHKSVIDEKISTHL-EKWTIDRIASVERTILRMAILEIMYIDDIPQNVSINEAIELA 105

Query: 135 HDFFYGDEPKFINAVLDKV 153
           H F      KF+N VL K+
Sbjct: 106 HTFGDEQSGKFVNGVLSKI 124


>gi|295839941|ref|ZP_06826874.1| transcription antitermination factor NusB [Streptomyces sp. SPB74]
 gi|197696775|gb|EDY43708.1| transcription antitermination factor NusB [Streptomyces sp. SPB74]
          Length = 144

 Score =  149 bits (376), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 32/138 (23%), Positives = 61/138 (44%), Gaps = 9/138 (6%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           R  AR  A Q L++ D  G     +++++  +      +  V         E+   ++ G
Sbjct: 4   RNTARKRAFQILFEADQRGTDVLTVLADWVRHSRSDTQQPPVS--------EYTMELVEG 55

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
                + ID +I+   +  W   R+ ++  +I+R G  EL+     P  V++ E V +A 
Sbjct: 56  YAAHARRIDEVIAKY-SVDWPLDRMPVVDRNIVRLGAHELVWVDGTPDAVVMDEAVELAK 114

Query: 136 DFFYGDEPKFINAVLDKV 153
           +F   D P F+N +L + 
Sbjct: 115 EFSTDDSPAFVNGLLGRF 132


>gi|134098647|ref|YP_001104308.1| NusB antitermination factor [Saccharopolyspora erythraea NRRL 2338]
 gi|291003667|ref|ZP_06561640.1| NusB antitermination factor [Saccharopolyspora erythraea NRRL 2338]
 gi|166918811|sp|A4FBF8|NUSB_SACEN RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|133911270|emb|CAM01383.1| NusB antitermination factor [Saccharopolyspora erythraea NRRL 2338]
          Length = 148

 Score =  149 bits (376), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 40/140 (28%), Positives = 63/140 (45%), Gaps = 14/140 (10%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           R  AR  AV  LY+ D+ G     ++S              V S  L    E+   ++ G
Sbjct: 4   RNKARKRAVDVLYEADLRGEDAVTLLS------------GRVGSPDLPPVNEYTVTLVEG 51

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIEC-HSVPVEVIISEYVCIA 134
           V   +Q ID L+     E W+ +R+  +  ++LR G+ EL+     VP  V I E V + 
Sbjct: 52  VTANRQRIDELLVEH-AEGWTLARMPAVDRAVLRLGLYELLWRSDDVPPAVAIDEAVELV 110

Query: 135 HDFFYGDEPKFINAVLDKVS 154
                 D P+F+N VL +++
Sbjct: 111 KALSTDDSPRFVNGVLGRIA 130


>gi|257875394|ref|ZP_05655047.1| antitermination protein NusB [Enterococcus casseliflavus EC20]
 gi|257809560|gb|EEV38380.1| antitermination protein NusB [Enterococcus casseliflavus EC20]
          Length = 154

 Score =  149 bits (376), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 38/153 (24%), Positives = 68/153 (44%), Gaps = 3/153 (1%)

Query: 10  LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF 69
           +     R   R  A+QAL+ +D     T +   +   +    +    ++    H    + 
Sbjct: 1   MSKELSRHEIRKMALQALFPLDFNKDLTKQ---DAIMHAIELEHHELIDEEQEHFVPVYL 57

Query: 70  RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISE 129
             ++ GV   K+ +D +I S L   W   RL  +  +ILR  + E+I   +VP  V ++E
Sbjct: 58  DQLVAGVCHYKEALDEVIQSHLKSGWKIQRLSKMDVTILRIALYEMIYVDNVPNRVALNE 117

Query: 130 YVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRS 162
            + +A  F      KF+N +L  V+++ E K S
Sbjct: 118 AIELAKTFSDDQSRKFVNGILSTVNQELETKAS 150


>gi|257095841|ref|YP_003169482.1| NusB antitermination factor [Candidatus Accumulibacter phosphatis
           clade IIA str. UW-1]
 gi|257048365|gb|ACV37553.1| NusB antitermination factor [Candidatus Accumulibacter phosphatis
           clade IIA str. UW-1]
          Length = 164

 Score =  149 bits (376), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 40/152 (26%), Positives = 64/152 (42%), Gaps = 13/152 (8%)

Query: 3   IQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYL 62
                +   +   R  AR  A+QALYQ  + G     I +            L     + 
Sbjct: 7   TTPGARPASVRSPRRRAREFALQALYQWQLSGNDEAAIEA-----------HLGDSEGFD 55

Query: 63  HVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVP 122
             D E+F  ++ GV+ +++ +   + + L     F  L  +   +L AG  EL      P
Sbjct: 56  KADREFFAGLLRGVLAQRRTLQEQLQAFLDR--PFGELSPVEACVLLAGAFELNNHPQTP 113

Query: 123 VEVIISEYVCIAHDFFYGDEPKFINAVLDKVS 154
             VII+E V +A  F   D  K++N VLDK++
Sbjct: 114 YGVIINESVELAKGFGGTDGHKYVNGVLDKLA 145


>gi|84515388|ref|ZP_01002750.1| putative N utilization substance protein B [Loktanella
           vestfoldensis SKA53]
 gi|84510671|gb|EAQ07126.1| putative N utilization substance protein B [Loktanella
           vestfoldensis SKA53]
          Length = 155

 Score =  149 bits (376), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 55/162 (33%), Positives = 92/162 (56%), Gaps = 11/162 (6%)

Query: 1   MTIQDN-KKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVES 59
           MTI +N ++ +K       AR  AVQAL+Q++  G +   I+ E+E +RF    E+  + 
Sbjct: 1   MTISNNQRRKMK-----SAARFYAVQALFQMEATGQTVEGIVREFEDHRFG---EIIDDV 52

Query: 60  VYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECH 119
             +  D++ FR ++   +D +  ID +    L EKW  +R+D    ++ RA   EL++  
Sbjct: 53  ELVEGDVDTFRRMMDRAVDLQASIDQMTDRALVEKWPIARIDPTWRALFRAAGAELLD-K 111

Query: 120 SVPVEVIISEYVCIAHDFF-YGDEPKFINAVLDKVSRKEEIK 160
             P +V+ISE+V +A  F   G EPKF+NAVLD ++R+ + +
Sbjct: 112 DTPPKVVISEFVAVAEAFSHDGKEPKFVNAVLDHMARQAQPE 153


>gi|325569721|ref|ZP_08145768.1| N utilization substance protein B [Enterococcus casseliflavus ATCC
           12755]
 gi|325157277|gb|EGC69442.1| N utilization substance protein B [Enterococcus casseliflavus ATCC
           12755]
          Length = 154

 Score =  148 bits (375), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 37/153 (24%), Positives = 68/153 (44%), Gaps = 3/153 (1%)

Query: 10  LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF 69
           +     R   R  A+QAL+ +D     T +   +   +    +    ++    H    + 
Sbjct: 1   MSKELSRHEIRKMALQALFPLDFNKDLTKQ---DAIMHAIELEHHELIDEEQEHFVPVYL 57

Query: 70  RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISE 129
             ++ GV   K+ +D +I S L   W   RL  +  +ILR  + E+I   +VP  V ++E
Sbjct: 58  DQLVAGVCHYKEALDEVIQSHLKAGWKIQRLSKMDVTILRIALYEMIYVDNVPNRVALNE 117

Query: 130 YVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRS 162
            + +A  F      KF+N +L  V+++ E K +
Sbjct: 118 AIELAKTFSDDQSRKFVNGILSTVNQELETKNN 150


>gi|302533374|ref|ZP_07285716.1| transcription antitermination factor NusB [Streptomyces sp. C]
 gi|302442269|gb|EFL14085.1| transcription antitermination factor NusB [Streptomyces sp. C]
          Length = 143

 Score =  148 bits (375), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 41/147 (27%), Positives = 68/147 (46%), Gaps = 12/147 (8%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           R  AR  A Q L++ D  G    E+++++  +    D +  V          +   ++ G
Sbjct: 4   RSNARKRAFQILFEADQRGVPVREVLADWIRHSRSDDRQPPVN--------AFTMDLVEG 55

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
             D+ + ID LI +     W   R+ ++  +ILR G  ELI     P  V I E V +A 
Sbjct: 56  YADKVKRIDDLIVTYAV-DWELDRMPVVDRNILRLGAYELIWVDETPDAVAIDEAVQLAK 114

Query: 136 DFFYGDEPKFINAVLDKVSRKEEIKRS 162
           +F   D P F+N +L   +R +++K S
Sbjct: 115 EFSTDDSPAFVNGLL---ARFKDLKPS 138


>gi|332970403|gb|EGK09395.1| transcription antitermination factor NusB [Kingella kingae ATCC
           23330]
          Length = 151

 Score =  148 bits (375), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 46/165 (27%), Positives = 70/165 (42%), Gaps = 17/165 (10%)

Query: 1   MTIQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESV 60
           M  + N+   K S RR  AR  AVQALYQ+ +      E+ S    +             
Sbjct: 1   MESKMNQPKTKKSPRRR-AREFAVQALYQVAMNQSIAAEVASHMREH-----------GD 48

Query: 61  YLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHS 120
           + + D E F  +  G    ++     I   L      + ++ I  +IL     EL     
Sbjct: 49  FKNADNELFTELFFGAHQNQREYMQHIRPHLDRDE--NAVNPIERAILLLATHELAAMPQ 106

Query: 121 VPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVS---RKEEIKRS 162
            P  V+I+E V +   F   D  KFIN++LDK++   R +E KR+
Sbjct: 107 TPYPVVINEAVELTKTFGGTDSHKFINSILDKLAGELRPDEPKRN 151


>gi|121605810|ref|YP_983139.1| transcription antitermination protein NusB [Polaromonas
           naphthalenivorans CJ2]
 gi|120594779|gb|ABM38218.1| NusB antitermination factor [Polaromonas naphthalenivorans CJ2]
          Length = 173

 Score =  148 bits (375), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 40/154 (25%), Positives = 65/154 (42%), Gaps = 14/154 (9%)

Query: 1   MTIQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESV 60
           +T    KK    S  R  AR  A+QALYQ  +       I           D        
Sbjct: 18  LTDTGVKKAADKSA-RTRAREFALQALYQHLVGQNGADSI-----------DAFTRDLVG 65

Query: 61  YLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHS 120
           +   D   +  ++HG ++ ++ +D  I+  L  K   + +  +  +IL  G  E   C  
Sbjct: 66  FHKADSAHYDALLHGCIESEKALDENITPLLDRK--MAEISPVEHAILWIGAYEFTNCLD 123

Query: 121 VPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVS 154
           VP  V+I+E + +A  F   D  K++N VL K++
Sbjct: 124 VPYRVVINECIELAKAFGGTDGHKYVNGVLHKMA 157


>gi|312139563|ref|YP_004006899.1| transcriptional antiterminator factor nusb [Rhodococcus equi 103S]
 gi|325672553|ref|ZP_08152249.1| transcription antitermination protein NusB [Rhodococcus equi ATCC
           33707]
 gi|311888902|emb|CBH48215.1| transcriptional antiterminator factor NusB [Rhodococcus equi 103S]
 gi|325556430|gb|EGD26096.1| transcription antitermination protein NusB [Rhodococcus equi ATCC
           33707]
          Length = 167

 Score =  148 bits (375), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 38/144 (26%), Positives = 59/144 (40%), Gaps = 9/144 (6%)

Query: 11  KLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFR 70
           K    R  AR  AV  L++ +       ++  E        D+   V          +  
Sbjct: 6   KKLGARHKARKRAVDFLFEAEARDVDPVDLADERSDLAGRDDSVAPV--------APYTV 57

Query: 71  VIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEY 130
            ++ GV +    +D +I S L + W+  RL  +  +ILR  V EL     VP  V + E 
Sbjct: 58  TVVQGVAENLDRLDQVIESHL-QDWTLDRLPAVDRAILRIAVWELFHATDVPPVVAVDEA 116

Query: 131 VCIAHDFFYGDEPKFINAVLDKVS 154
           V +A +    D P F+N VL +V 
Sbjct: 117 VELAKELSTDDSPGFVNGVLGQVV 140


>gi|148261108|ref|YP_001235235.1| NusB antitermination factor [Acidiphilium cryptum JF-5]
 gi|326404509|ref|YP_004284591.1| transcription antitermination protein NusB [Acidiphilium multivorum
           AIU301]
 gi|146402789|gb|ABQ31316.1| NusB antitermination factor [Acidiphilium cryptum JF-5]
 gi|325051371|dbj|BAJ81709.1| transcription antitermination protein NusB [Acidiphilium multivorum
           AIU301]
          Length = 165

 Score =  148 bits (375), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 51/151 (33%), Positives = 77/151 (50%), Gaps = 2/151 (1%)

Query: 7   KKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELD--VESVYLHV 64
           K     +  R +AR AAVQALYQ +  G +   +I ++  +RF     +    E      
Sbjct: 2   KPAGSKARPRTLARAAAVQALYQCEHAGETAETVIDQFVRHRFGRMAGMLGVEEGEVPPP 61

Query: 65  DLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVE 124
           D+  F  I+     ++  +D LI+  L E W   RLD +L ++LRA   EL      P  
Sbjct: 62  DVPLFSRIVRTATAQQDVVDPLIAGVLPEAWPMPRLDPVLRALLRAAGAELWMTDGPPAR 121

Query: 125 VIISEYVCIAHDFFYGDEPKFINAVLDKVSR 155
           V+I+EY+ +AH F  GD  +  NAVLD+++R
Sbjct: 122 VVINEYLDVAHGFLEGDAVQMGNAVLDRIAR 152


>gi|257865766|ref|ZP_05645419.1| antitermination protein NusB [Enterococcus casseliflavus EC30]
 gi|257872101|ref|ZP_05651754.1| antitermination protein NusB [Enterococcus casseliflavus EC10]
 gi|257799700|gb|EEV28752.1| antitermination protein NusB [Enterococcus casseliflavus EC30]
 gi|257806265|gb|EEV35087.1| antitermination protein NusB [Enterococcus casseliflavus EC10]
          Length = 154

 Score =  148 bits (375), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 37/153 (24%), Positives = 68/153 (44%), Gaps = 3/153 (1%)

Query: 10  LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF 69
           +     R   R  A+QAL+ +D     T +   +   +    +    ++    H    + 
Sbjct: 1   MSKELSRHEIRKMALQALFPLDFNKDLTKQ---DAIMHAIELEHHELIDEEQEHFVPVYL 57

Query: 70  RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISE 129
             ++ GV   K+ +D +I S L   W   RL  +  +ILR  + E+I   +VP  V ++E
Sbjct: 58  DQLVAGVCHYKEALDEVIQSHLKSGWKIQRLSKMDVTILRIALYEMIYVDNVPNRVALNE 117

Query: 130 YVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRS 162
            + +A  F      KF+N +L  V+++ E K +
Sbjct: 118 AIELAKTFSDDQSRKFVNGILSTVNQELETKTN 150


>gi|118470676|ref|YP_887353.1| transcription antitermination protein NusB [Mycobacterium smegmatis
           str. MC2 155]
 gi|166215698|sp|A0QWR5|NUSB_MYCS2 RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|118171963|gb|ABK72859.1| transcription antitermination factor NusB [Mycobacterium smegmatis
           str. MC2 155]
          Length = 160

 Score =  148 bits (375), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 39/146 (26%), Positives = 62/146 (42%), Gaps = 9/146 (6%)

Query: 8   KDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLE 67
            D +    R  AR  AV  L++ +  G +   +           D    +          
Sbjct: 2   PDRRGDRGRHQARKRAVDLLFEAEARGLTAEAVADSRAALAEDQDDVAPLN--------P 53

Query: 68  WFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVII 127
           +  ++  GV +   HID LIS+ L + W+  RL  +  +ILR  V EL+    VP  V +
Sbjct: 54  YTVLVARGVTEHAAHIDDLISAHL-QGWTLERLPAVDRAILRVAVWELLHAEDVPEPVAV 112

Query: 128 SEYVCIAHDFFYGDEPKFINAVLDKV 153
            E V +A +    + P F+N VL +V
Sbjct: 113 DEAVELAKELSTDESPGFVNGVLGQV 138


>gi|325923217|ref|ZP_08184896.1| transcription antitermination factor NusB [Xanthomonas gardneri
           ATCC 19865]
 gi|325546299|gb|EGD17474.1| transcription antitermination factor NusB [Xanthomonas gardneri
           ATCC 19865]
          Length = 131

 Score =  148 bits (375), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 38/144 (26%), Positives = 63/144 (43%), Gaps = 16/144 (11%)

Query: 24  VQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHI 83
           +QA+Y   I G    ++IS++             E  +   DL +F  ++ GV+  +  +
Sbjct: 1   MQAVYAWQISGGFAKQVISQFAH-----------EQAHEVADLAYFESLVEGVLTNRAEL 49

Query: 84  DLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEP 143
           D  ++  L        +D I  ++LR    EL+    VP  V+I+E +  A  F      
Sbjct: 50  DTALTPYLDRG--VEEVDAIERAVLRLAAYELLYRQDVPYRVVINEAIETAKRFGSEHGH 107

Query: 144 KFINAVLDKVS---RKEEIKRSGC 164
            ++N VLD+ S   RK E   SG 
Sbjct: 108 TYVNGVLDRASVEWRKVESGASGA 131


>gi|89895110|ref|YP_518597.1| hypothetical protein DSY2364 [Desulfitobacterium hafniense Y51]
 gi|219669523|ref|YP_002459958.1| NusB antitermination factor [Desulfitobacterium hafniense DCB-2]
 gi|119390768|sp|Q24UY9|NUSB_DESHY RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|254772633|sp|B8FQ61|NUSB_DESHD RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|89334558|dbj|BAE84153.1| hypothetical protein [Desulfitobacterium hafniense Y51]
 gi|219539783|gb|ACL21522.1| NusB antitermination factor [Desulfitobacterium hafniense DCB-2]
          Length = 148

 Score =  148 bits (375), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 38/145 (26%), Positives = 65/145 (44%), Gaps = 10/145 (6%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           R +AR  A+Q L+Q+++ G S              A  +   E       + +   +  G
Sbjct: 3   RRLARETALQVLFQLEMTGESQD---------LKSAIHKWADEFAVPEGSIPFAEELAEG 53

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
            +  K+ ID  +   L+E WS +R+  +  ++LR    E++    +P  V I+E + IA 
Sbjct: 54  TLTHKEVIDENLEK-LSEGWSLARMANVDRNLLRLASYEILFRKDIPGRVTINEAIEIAK 112

Query: 136 DFFYGDEPKFINAVLDKVSRKEEIK 160
            +   +  KFIN +LDKV      K
Sbjct: 113 RYGSEESGKFINGILDKVVESVNKK 137


>gi|308069602|ref|YP_003871207.1| N utilization substance protein B-like protein [Paenibacillus
           polymyxa E681]
 gi|305858881|gb|ADM70669.1| N utilization substance protein B-like protein [Paenibacillus
           polymyxa E681]
          Length = 149

 Score =  148 bits (375), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 37/144 (25%), Positives = 65/144 (45%), Gaps = 2/144 (1%)

Query: 15  RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74
           +R +AR  AVQ++Y +++        +            E +V      V   +    + 
Sbjct: 2   KRRLARELAVQSMYHMEMNEVDAAAAVDMLLQEAAEE-NEAEVVVKNAAVLRAYVLEHVR 60

Query: 75  GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134
           G  + K+ ID L+   L + W  SRL  +   ILR    E+I    VP +V ++E + ++
Sbjct: 61  GTWEHKEAIDGLLVDYL-KGWQISRLSRVDRQILRLAAYEMIFREDVPAKVAVNEAIELS 119

Query: 135 HDFFYGDEPKFINAVLDKVSRKEE 158
             F   +  KF+N VL +V ++ E
Sbjct: 120 KHFGTEESGKFVNGVLGRVIQELE 143


>gi|317505974|ref|ZP_07963806.1| transcription antitermination factor NusB [Segniliparus rugosus
           ATCC BAA-974]
 gi|316255750|gb|EFV14988.1| transcription antitermination factor NusB [Segniliparus rugosus
           ATCC BAA-974]
          Length = 166

 Score =  148 bits (375), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 43/167 (25%), Positives = 68/167 (40%), Gaps = 8/167 (4%)

Query: 1   MTIQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESV 60
           M+        K +  R  ARL AV+ L++ +       E+ +E             V+ +
Sbjct: 1   MSDPAKSDSAKRAGSRRKARLRAVELLFEAEARDLDPAELAAERSAEL--------VKDL 52

Query: 61  YLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHS 120
                  +  V++ GV D  + +D  IS  L   WS +RL  +  SILR  V EL+    
Sbjct: 53  SAPQLTPYALVVLEGVRDHLEVVDQTISDHLRGDWSLNRLPAVDRSILRVAVWELLFAPE 112

Query: 121 VPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRSGCVSA 167
           VP  V + E + +A      + P FIN VL ++       R    + 
Sbjct: 113 VPTAVAVDEALELAKGLSTDESPGFINGVLGRLVELANQIRGAAEAG 159


>gi|300692261|ref|YP_003753256.1| antitermination factor (N utilization substance B) (transcriptional
           antiterminator) [Ralstonia solanacearum PSI07]
 gi|299079321|emb|CBJ51993.1| antitermination factor (N utilization substance B) (transcriptional
           antiterminator) [Ralstonia solanacearum PSI07]
          Length = 155

 Score =  148 bits (375), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 35/156 (22%), Positives = 62/156 (39%), Gaps = 15/156 (9%)

Query: 1   MTIQDNKKDLKLSHR--RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVE 58
           MT   +    K   +  R  AR  A+Q LYQ  +       + +                
Sbjct: 1   MTQDTSPAKPKAPPKSARRRARELALQGLYQWLLNRNDPGVVEAHLHD-----------A 49

Query: 59  SVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIEC 118
             +   D   F  ++HG +  +  +    +  L      + L  +  + L  G  EL+ C
Sbjct: 50  QGFNKADRAHFDALLHGAIREEATLTESFTPFLDR--PVAELSPVERAALLVGAYELVHC 107

Query: 119 HSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVS 154
             +P +V+I+E V +A  F   +  K++N VLDK++
Sbjct: 108 VDIPYKVVINEAVELAKTFGGVEGYKYVNGVLDKLA 143


>gi|226366336|ref|YP_002784119.1| transcription antitermination protein NusB [Rhodococcus opacus B4]
 gi|254772652|sp|C1B4I5|NUSB_RHOOB RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|226244826|dbj|BAH55174.1| transcription antitermination protein NusB [Rhodococcus opacus B4]
          Length = 169

 Score =  148 bits (375), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 37/144 (25%), Positives = 61/144 (42%), Gaps = 9/144 (6%)

Query: 11  KLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFR 70
           K    R  AR  AV  L++ +       ++ +E          EL  +   +     +  
Sbjct: 6   KKLGARHKARKRAVDFLFEAEARDLDPVDLATER--------AELSGKDDSVAPVAPYTV 57

Query: 71  VIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEY 130
            ++ GV +    +D +ISS L + W+  RL  +  +ILR  V EL     VP  V + E 
Sbjct: 58  TVVTGVAENLDRLDEVISSHL-QDWTLERLPAVDRAILRIAVWELFHATDVPPVVAVDEA 116

Query: 131 VCIAHDFFYGDEPKFINAVLDKVS 154
           V +A      + P F+N +L +V 
Sbjct: 117 VELAKQLSTDESPGFVNGILGQVV 140


>gi|332523180|ref|ZP_08399432.1| transcription antitermination factor NusB [Streptococcus porcinus
           str. Jelinkova 176]
 gi|332314444|gb|EGJ27429.1| transcription antitermination factor NusB [Streptococcus porcinus
           str. Jelinkova 176]
          Length = 143

 Score =  148 bits (374), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 34/144 (23%), Positives = 63/144 (43%), Gaps = 7/144 (4%)

Query: 14  HRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVII 73
           + R   R  A QAL+ ++  G          E+ +F  D +   +  +      +   ++
Sbjct: 7   NSRRDLRERAFQALFNMEHGGDFL-------ESSQFAYDYDKVSDQDHPLDIPAFLLTLV 59

Query: 74  HGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCI 133
           +GV + K  +D +I   L + WS  RL +   ++LR G+ E+      P  V ++E + I
Sbjct: 60  NGVNNHKDELDAIIKENLKKGWSIERLTLSDRTMLRLGLYEIKYFDETPDRVALNEIIEI 119

Query: 134 AHDFFYGDEPKFINAVLDKVSRKE 157
           A  +      KFIN +L +  +  
Sbjct: 120 AKKYSDETSAKFINGLLSQFVKDN 143


>gi|257792277|ref|YP_003182883.1| NusB antitermination factor [Eggerthella lenta DSM 2243]
 gi|257476174|gb|ACV56494.1| NusB antitermination factor [Eggerthella lenta DSM 2243]
          Length = 195

 Score =  148 bits (374), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 42/152 (27%), Positives = 70/152 (46%), Gaps = 14/152 (9%)

Query: 12  LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71
             H R  AR AA+Q LY  +I   S   I           ++ LD +        E+   
Sbjct: 4   KRHERTSARRAALQVLYTSEITDESPAAIAE--------GNSRLDEDGPLP----EYALK 51

Query: 72  IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
           ++ GV   +  ID  ++   +E WS +R+ ++  SILR    E++    VP  V I+E V
Sbjct: 52  LVLGVESHRCAIDNHLA-ATSENWSLARMPIVDRSILRLATFEMMYIDDVPTSVTINEAV 110

Query: 132 CIAHDFFYGD-EPKFINAVLDKVSRKEEIKRS 162
            +A DF   D   +F+N +L ++++  E +  
Sbjct: 111 ELAKDFGGEDESHRFVNGILGRIAKMLEGEED 142


>gi|15609670|ref|NP_217049.1| transcription antitermination protein NusB [Mycobacterium
           tuberculosis H37Rv]
 gi|148662371|ref|YP_001283894.1| transcription antitermination protein NusB [Mycobacterium
           tuberculosis H37Ra]
 gi|148823728|ref|YP_001288482.1| transcription antitermination protein NusB [Mycobacterium
           tuberculosis F11]
 gi|167967008|ref|ZP_02549285.1| transcription antitermination protein NusB [Mycobacterium
           tuberculosis H37Ra]
 gi|215404474|ref|ZP_03416655.1| transcription antitermination protein NusB [Mycobacterium
           tuberculosis 02_1987]
 gi|215412305|ref|ZP_03421065.1| transcription antitermination protein NusB [Mycobacterium
           tuberculosis 94_M4241A]
 gi|215446785|ref|ZP_03433537.1| transcription antitermination protein NusB [Mycobacterium
           tuberculosis T85]
 gi|218754265|ref|ZP_03533061.1| transcription antitermination protein NusB [Mycobacterium
           tuberculosis GM 1503]
 gi|253798387|ref|YP_003031388.1| N utilization substance protein B nusB [Mycobacterium tuberculosis
           KZN 1435]
 gi|254232655|ref|ZP_04925982.1| N utilization substance protein nusB (nusb protein) [Mycobacterium
           tuberculosis C]
 gi|254366739|ref|ZP_04982782.1| N utilization substance protein nusB (nusb protein) [Mycobacterium
           tuberculosis str. Haarlem]
 gi|254551582|ref|ZP_05142029.1| transcription antitermination protein NusB [Mycobacterium
           tuberculosis '98-R604 INH-RIF-EM']
 gi|289553678|ref|ZP_06442888.1| N utilization substance protein B nusB [Mycobacterium tuberculosis
           KZN 605]
 gi|289746319|ref|ZP_06505697.1| N utilization substance protein nusB [Mycobacterium tuberculosis
           02_1987]
 gi|289758663|ref|ZP_06518041.1| transcription antitermination protein NusB [Mycobacterium
           tuberculosis T85]
 gi|289762701|ref|ZP_06522079.1| N utilization substance protein nusB (nusb protein) [Mycobacterium
           tuberculosis GM 1503]
 gi|294994358|ref|ZP_06800049.1| transcription antitermination protein NusB [Mycobacterium
           tuberculosis 210]
 gi|297635143|ref|ZP_06952923.1| transcription antitermination protein NusB [Mycobacterium
           tuberculosis KZN 4207]
 gi|297732134|ref|ZP_06961252.1| transcription antitermination protein NusB [Mycobacterium
           tuberculosis KZN R506]
 gi|298526007|ref|ZP_07013416.1| transcription antitermination protein NusB [Mycobacterium
           tuberculosis 94_M4241A]
 gi|306776807|ref|ZP_07415144.1| N utilization substance protein B nusB [Mycobacterium tuberculosis
           SUMu001]
 gi|306780573|ref|ZP_07418910.1| N utilization substance protein B nusB [Mycobacterium tuberculosis
           SUMu002]
 gi|306789935|ref|ZP_07428257.1| N utilization substance protein B nusB [Mycobacterium tuberculosis
           SUMu004]
 gi|313659467|ref|ZP_07816347.1| transcription antitermination protein NusB [Mycobacterium
           tuberculosis KZN V2475]
 gi|7387976|sp|P95020|NUSB_MYCTU RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|166215701|sp|A5U5N2|NUSB_MYCTA RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|8569494|pdb|1EYV|A Chain A, The Crystal Structure Of Nusb From Mycobacterium
           Tuberculosis
 gi|8569495|pdb|1EYV|B Chain B, The Crystal Structure Of Nusb From Mycobacterium
           Tuberculosis
 gi|1781069|emb|CAB06175.1| N UTILIZATION SUBSTANCE PROTEIN NUSB (NUSB PROTEIN) [Mycobacterium
           tuberculosis H37Rv]
 gi|124601714|gb|EAY60724.1| N utilization substance protein nusB (nusb protein) [Mycobacterium
           tuberculosis C]
 gi|134152250|gb|EBA44295.1| N utilization substance protein nusB (nusb protein) [Mycobacterium
           tuberculosis str. Haarlem]
 gi|148506523|gb|ABQ74332.1| transcription antitermination protein NusB [Mycobacterium
           tuberculosis H37Ra]
 gi|148722255|gb|ABR06880.1| N utilization substance protein B nusB [Mycobacterium tuberculosis
           F11]
 gi|253319890|gb|ACT24493.1| N utilization substance protein B nusB [Mycobacterium tuberculosis
           KZN 1435]
 gi|289438310|gb|EFD20803.1| N utilization substance protein B nusB [Mycobacterium tuberculosis
           KZN 605]
 gi|289686847|gb|EFD54335.1| N utilization substance protein nusB [Mycobacterium tuberculosis
           02_1987]
 gi|289710207|gb|EFD74223.1| N utilization substance protein nusB (nusb protein) [Mycobacterium
           tuberculosis GM 1503]
 gi|289714227|gb|EFD78239.1| transcription antitermination protein NusB [Mycobacterium
           tuberculosis T85]
 gi|298495801|gb|EFI31095.1| transcription antitermination protein NusB [Mycobacterium
           tuberculosis 94_M4241A]
 gi|308214814|gb|EFO74213.1| N utilization substance protein B nusB [Mycobacterium tuberculosis
           SUMu001]
 gi|308326587|gb|EFP15438.1| N utilization substance protein B nusB [Mycobacterium tuberculosis
           SUMu002]
 gi|308333625|gb|EFP22476.1| N utilization substance protein B nusB [Mycobacterium tuberculosis
           SUMu004]
 gi|323718889|gb|EGB28044.1| N utilization substance protein B nusB [Mycobacterium tuberculosis
           CDC1551A]
 gi|326904148|gb|EGE51081.1| N utilization substance protein B nusB [Mycobacterium tuberculosis
           W-148]
 gi|328458157|gb|AEB03580.1| N utilization substance protein B nusB [Mycobacterium tuberculosis
           KZN 4207]
          Length = 156

 Score =  148 bits (374), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 44/145 (30%), Positives = 70/145 (48%), Gaps = 9/145 (6%)

Query: 9   DLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEW 68
           D K    R  AR  AV  L++ ++ G S  E++    T    A+ + D+  ++      +
Sbjct: 3   DRKPVRGRHQARKRAVALLFEAEVRGISAAEVVD---TRAALAEAKPDIARLH-----PY 54

Query: 69  FRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIIS 128
              +  GV +   HID LI++ L   W+  RL  +  +ILR  V EL+    VP  V++ 
Sbjct: 55  TAAVARGVSEHAAHIDDLITAHL-RGWTLDRLPAVDRAILRVSVWELLHAADVPEPVVVD 113

Query: 129 EYVCIAHDFFYGDEPKFINAVLDKV 153
           E V +A +    D P F+N VL +V
Sbjct: 114 EAVQLAKELSTDDSPGFVNGVLGQV 138


>gi|25008871|sp|Q8K9A2|NUSB_BUCAP RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|21623355|gb|AAM67990.1| N utilization substance protein B [Buchnera aphidicola str. Sg
           (Schizaphis graminum)]
          Length = 138

 Score =  148 bits (374), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 42/141 (29%), Positives = 64/141 (45%), Gaps = 13/141 (9%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           R  AR  A+Q LY  +I   +  +   E+             E    ++D+ +F  +I G
Sbjct: 8   RRKARACALQMLYSWEISQNNIKDSAIEFLK-----------EKNKKNIDIIYFYELIIG 56

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
           +    + ID L+   L+   S   L  I  +ILR    EL +   +P +V I+E + +A 
Sbjct: 57  ITYNCRSIDDLMKPYLSR--SLKELGQIEKAILRISFYELYKRKDIPYKVSINEGIELAK 114

Query: 136 DFFYGDEPKFINAVLDKVSRK 156
            F   D  KFIN VLDK + K
Sbjct: 115 LFGSEDSHKFINGVLDKAALK 135


>gi|218781155|ref|YP_002432473.1| NusB antitermination factor [Desulfatibacillum alkenivorans AK-01]
 gi|226738896|sp|B8FJ78|NUSB_DESAA RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|218762539|gb|ACL05005.1| NusB antitermination factor [Desulfatibacillum alkenivorans AK-01]
          Length = 143

 Score =  148 bits (374), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 33/152 (21%), Positives = 63/152 (41%), Gaps = 16/152 (10%)

Query: 15  RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74
           +R  AR  A+Q+L+ +D       E +  +                      ++F  +  
Sbjct: 3   KRRRARELALQSLFYVDSTSAPPLEALDLFCQ-----------NFPPPKDLAQFFYELAK 51

Query: 75  GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134
           GV++ +  ID LI    +  W   R+  +  +++R    E + C  VP  V I+E + I 
Sbjct: 52  GVINNQDEIDRLIEQH-SNNWKLYRMSAVDLNLMRIAAYEFLFCPDVPRRVSINEAIDIG 110

Query: 135 HDFFYGDEPKFINAVLDKV----SRKEEIKRS 162
             F   +   FIN +LD +     ++E+ ++ 
Sbjct: 111 KRFGTAESGAFINGILDSIHLHLGKEEKAEKK 142


>gi|304316761|ref|YP_003851906.1| NusB antitermination factor [Thermoanaerobacterium
           thermosaccharolyticum DSM 571]
 gi|302778263|gb|ADL68822.1| NusB antitermination factor [Thermoanaerobacterium
           thermosaccharolyticum DSM 571]
          Length = 140

 Score =  148 bits (374), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 36/149 (24%), Positives = 65/149 (43%), Gaps = 15/149 (10%)

Query: 15  RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74
            R  AR   V+ LYQ D+      +I++ +             ES     + ++     +
Sbjct: 2   NRTQAREWLVKLLYQFDVSKSEPPDILNRF------------FESNDPEEEKDYIEKTFY 49

Query: 75  GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134
           G+++   +ID  I   L + W  +R+  I  +I+R    E++ C  +P  V I+E V IA
Sbjct: 50  GIVENVNNIDDRIKKYL-KNWDINRIAKIDLAIIRCSFYEILYCDDIPNSVSINEAVEIA 108

Query: 135 HDFFYGDEPKFINAVLDKVSRKEEIKRSG 163
             +     P FIN +L  + +  +   +G
Sbjct: 109 KKYSTEKSPSFINGILGSLVK--DFNNNG 135


>gi|254498159|ref|ZP_05110911.1| transcription termination factor NusB [Legionella drancourtii
           LLAP12]
 gi|254352625|gb|EET11408.1| transcription termination factor NusB [Legionella drancourtii
           LLAP12]
          Length = 147

 Score =  148 bits (374), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 34/141 (24%), Positives = 69/141 (48%), Gaps = 13/141 (9%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           +  AR  A+QALYQ  + G   +EI +++                   VD+++F  +++G
Sbjct: 9   KRKARKLALQALYQWFMSGSEVSEIEAQFRLIN-----------NMSKVDVDYFCRLLYG 57

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
           + +    ++   S  L  +     L+ I  ++LR G  EL  C  VP +V++ E + +  
Sbjct: 58  IPEHINELENSFSPFLDRE--VHELNPIELTVLRLGSFELFHCPEVPYKVVLDEAISLTK 115

Query: 136 DFFYGDEPKFINAVLDKVSRK 156
           +F   D  +++N VL+ ++++
Sbjct: 116 EFGSQDGYRYVNGVLNNLAQQ 136


>gi|299822999|ref|ZP_07054885.1| transcription antitermination factor NusB [Listeria grayi DSM
           20601]
 gi|299816528|gb|EFI83766.1| transcription antitermination factor NusB [Listeria grayi DSM
           20601]
          Length = 130

 Score =  148 bits (374), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 39/146 (26%), Positives = 67/146 (45%), Gaps = 17/146 (11%)

Query: 15  RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74
           +R  AR  A+QAL+Q+++   S  + +S                +V      ++ + ++ 
Sbjct: 2   KRREAREVALQALFQMELNEMSFEQAVS----------------NVMPEEQDDYVKKLVS 45

Query: 75  GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134
           GV   K  ID  I + L   W   RL+ +  SILR  V E+  C  +P  V ++E + I+
Sbjct: 46  GVDTHKADIDTAIEAHLD-NWRKDRLNKVDLSILRLSVFEMKYCEDIPDRVSLNEAIEIS 104

Query: 135 HDFFYGDEPKFINAVLDKVSRKEEIK 160
             +      KFIN VL  + ++ + K
Sbjct: 105 KVYSDEKSSKFINGVLANIVQESDDK 130


>gi|257869052|ref|ZP_05648705.1| antitermination protein NusB [Enterococcus gallinarum EG2]
 gi|257803216|gb|EEV32038.1| antitermination protein NusB [Enterococcus gallinarum EG2]
          Length = 150

 Score =  148 bits (374), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 36/153 (23%), Positives = 66/153 (43%), Gaps = 3/153 (1%)

Query: 10  LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF 69
           +     R   R  A+QAL+ +D     T +   +   +    +    ++    H    + 
Sbjct: 1   MSKELSRHEIRKMALQALFPLDFNKDLTKQ---DAIMHAIELEHHELIDEEQEHFVPAYL 57

Query: 70  RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISE 129
             ++ GV   K+ +D +I S L   W   RL  +  +ILR  + E++   +VP  V ++E
Sbjct: 58  DQLVAGVCQYKEALDEVIQSHLKSGWKIQRLSKMDVTILRIALYEMVYVDNVPNRVALNE 117

Query: 130 YVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRS 162
            + +A  F      KF+N +L  V+ + E K  
Sbjct: 118 AIELAKTFSDDQSRKFVNGILSNVNSEIESKND 150


>gi|110597193|ref|ZP_01385482.1| transcription antitermination factor NusB [Chlorobium ferrooxidans
           DSM 13031]
 gi|110341384|gb|EAT59849.1| transcription antitermination factor NusB [Chlorobium ferrooxidans
           DSM 13031]
          Length = 191

 Score =  148 bits (374), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 40/153 (26%), Positives = 67/153 (43%), Gaps = 14/153 (9%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           R   R   +QALY I+I             T     D             +++F +++  
Sbjct: 32  RRQIREKILQALYTIEIRETDIDSAAGWLLTQEILDDANA----------MKFFNLLLKS 81

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
           + + ++ ID  I+   T  W  SR+ +I  +ILR  + E++ C  +P +V I+E + IA 
Sbjct: 82  IKENREEIDRYIAKH-TFNWDMSRIAIIDKNILRMALAEILYCEDIPPKVSINEAIEIAK 140

Query: 136 DF-FYGDEPKFINAVLDKVSRKEEIKRSGCVSA 167
            F       KF+N +LD +    E+K  G V  
Sbjct: 141 KFTSTDKSSKFVNGILDAIF--NELKAEGKVHK 171


>gi|239978405|ref|ZP_04700929.1| transcription antitermination protein NusB [Streptomyces albus
           J1074]
 gi|291450301|ref|ZP_06589691.1| transcription antitermination protein NusB [Streptomyces albus
           J1074]
 gi|291353250|gb|EFE80152.1| transcription antitermination protein NusB [Streptomyces albus
           J1074]
          Length = 142

 Score =  148 bits (374), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 37/147 (25%), Positives = 68/147 (46%), Gaps = 12/147 (8%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           R  AR  A Q L++ D        +++++  +      +  V         E+   ++ G
Sbjct: 4   RNTARKRAFQILFEADQRSTDVLTVLADWIRHARSDTRQPPVS--------EYTMELVEG 55

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
             + ++ ID LI+      W+  R+ ++  +ILR G  ELI   + P  V++ E V +A 
Sbjct: 56  YAEHERRIDELIAQYAV-DWTLDRMPVVDRNILRLGAYELIWVDTTPDAVVLDEAVQLAK 114

Query: 136 DFFYGDEPKFINAVLDKVSRKEEIKRS 162
           +F   D P F+N +L   +R +E+K  
Sbjct: 115 EFSTDDSPAFVNGLL---ARFKELKPG 138


>gi|239993724|ref|ZP_04714248.1| transcription antitermination protein NusB [Alteromonas macleodii
           ATCC 27126]
          Length = 140

 Score =  148 bits (374), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 44/146 (30%), Positives = 64/146 (43%), Gaps = 14/146 (9%)

Query: 10  LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF 69
           +K+S RR  AR  A+Q +Y   +      ++           +  L   +    VD+ +F
Sbjct: 1   MKVSARR-KARELALQGVYSWQMSHNDIQQV-----------ELALATSNDMQKVDMAYF 48

Query: 70  RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISE 129
           + ++ GV      +D  I   L        LD I  +ILR   LEL E   VP  VII+E
Sbjct: 49  QALLRGVAHNASKLDTTIKPYLGR--LPEELDAIEKAILRIATLELTERIDVPYRVIINE 106

Query: 130 YVCIAHDFFYGDEPKFINAVLDKVSR 155
            + +A  F   +  KFIN  LDK  R
Sbjct: 107 AIELAKAFGAEESHKFINGALDKAVR 132


>gi|241662317|ref|YP_002980677.1| transcription antitermination protein NusB [Ralstonia pickettii
           12D]
 gi|240864344|gb|ACS62005.1| NusB antitermination factor [Ralstonia pickettii 12D]
          Length = 155

 Score =  148 bits (374), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 35/156 (22%), Positives = 64/156 (41%), Gaps = 15/156 (9%)

Query: 1   MTIQDNKKDLKLSHR--RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVE 58
           MT  +++   K   +  R  AR  A+Q LYQ  +       + +            L   
Sbjct: 1   MTQDNSQAKTKAPAKSARRRARELALQGLYQWLLNRNDPGVVEA-----------HLQDA 49

Query: 59  SVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIEC 118
             +   D   F  ++HG +  +  +    +  L      + L  +  + L  G  EL+ C
Sbjct: 50  QGFNKADRAHFDALLHGAIREETTLTEAFTPYLDR--PVAELSPVERAALLVGAYELVHC 107

Query: 119 HSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVS 154
             +P +V+I+E V +   F   +  K++N VLDK++
Sbjct: 108 VDIPYKVVINEAVELTKTFGGVEGYKYVNGVLDKLA 143


>gi|111024096|ref|YP_707068.1| transcription antitermination protein NusB [Rhodococcus jostii
           RHA1]
 gi|119390812|sp|Q0S0M6|NUSB_RHOSR RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|110823626|gb|ABG98910.1| N utilization substance protein B [Rhodococcus jostii RHA1]
          Length = 169

 Score =  148 bits (374), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 36/144 (25%), Positives = 60/144 (41%), Gaps = 9/144 (6%)

Query: 11  KLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFR 70
           K    R  AR  AV  L++ +       ++ +E          EL  +   +     +  
Sbjct: 6   KKLGARHKARKRAVDFLFEAEARDLDPVDLATER--------AELSGKDDSVAPVAPYTV 57

Query: 71  VIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEY 130
            ++ GV +    +D +I S L + W+  RL  +  +ILR  V EL     VP  V + E 
Sbjct: 58  TVVTGVAENLDRLDEVIRSHL-QDWTLERLPAVDRAILRIAVWELFHATDVPPVVAVDEA 116

Query: 131 VCIAHDFFYGDEPKFINAVLDKVS 154
           V +A      + P F+N +L +V 
Sbjct: 117 VELAKQLSTDESPGFVNGILGQVV 140


>gi|332141882|ref|YP_004427620.1| transcription antitermination protein NusB [Alteromonas macleodii
           str. 'Deep ecotype']
 gi|238693257|sp|B4RVY5|NUSB_ALTMD RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|327551904|gb|AEA98622.1| transcription antitermination protein NusB [Alteromonas macleodii
           str. 'Deep ecotype']
          Length = 140

 Score =  147 bits (373), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 44/146 (30%), Positives = 64/146 (43%), Gaps = 14/146 (9%)

Query: 10  LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF 69
           +K+S RR  AR  A+Q +Y   +      ++           +  L   +    VD+ +F
Sbjct: 1   MKVSARR-KARELALQGVYSWQMSHNDIQQV-----------ELALATSNDMQKVDMAYF 48

Query: 70  RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISE 129
           + ++ GV      +D  I   L        LD I  +ILR   LEL E   VP  VII+E
Sbjct: 49  QALLRGVAHNASKLDATIKPYLGR--LPEELDAIEKAILRIATLELTERIDVPYRVIINE 106

Query: 130 YVCIAHDFFYGDEPKFINAVLDKVSR 155
            + +A  F   +  KFIN  LDK  R
Sbjct: 107 AIELAKAFGAEESHKFINGALDKAVR 132


>gi|320536419|ref|ZP_08036456.1| transcription antitermination factor NusB [Treponema phagedenis
           F0421]
 gi|320146729|gb|EFW38308.1| transcription antitermination factor NusB [Treponema phagedenis
           F0421]
          Length = 136

 Score =  147 bits (373), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 40/140 (28%), Positives = 68/140 (48%), Gaps = 10/140 (7%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           R   R+ A QAL+  D    S  E++ ++E +      E   E  +L     + +++  G
Sbjct: 5   RRRGRILAFQALFAWDFGQSSPEELV-QFEWF---ETKEPVSEEAFL-----FPKMLFLG 55

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
            ++  + ID  I + L   W F RL+    +I+R GV  L+     P  ++I E V +A 
Sbjct: 56  TLEHLEEIDTHIKNNL-HNWDFDRLNKADKAIIRLGVYSLLFQKDTPSAIVIDEAVNLAR 114

Query: 136 DFFYGDEPKFINAVLDKVSR 155
            F   D  KF+NA+LD +++
Sbjct: 115 SFGTDDSFKFVNAILDSIAK 134


>gi|325918406|ref|ZP_08180534.1| transcription antitermination factor NusB [Xanthomonas vesicatoria
           ATCC 35937]
 gi|325535368|gb|EGD07236.1| transcription antitermination factor NusB [Xanthomonas vesicatoria
           ATCC 35937]
          Length = 156

 Score =  147 bits (373), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 33/140 (23%), Positives = 59/140 (42%), Gaps = 13/140 (9%)

Query: 25  QALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHID 84
           QA+Y   I G    ++I ++             E  +   DL +F  ++ GV+  +  +D
Sbjct: 30  QAVYAWQISGGFAKQVIGQFAH-----------EQAHEVADLAYFESLVEGVLTHRAELD 78

Query: 85  LLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPK 144
             ++  L        +D I  ++LR    EL+    VP  V+I+E +  A  F       
Sbjct: 79  TALTPYLDRG--VEEVDAIERAVLRLAAYELLYRQDVPYRVVINEAIETAKRFGSEHGHT 136

Query: 145 FINAVLDKVSRKEEIKRSGC 164
           ++N VLD+ + +     SG 
Sbjct: 137 YVNGVLDRAAVEWRKVESGA 156


>gi|310816559|ref|YP_003964523.1| putative N utilization substance protein B [Ketogulonicigenium
           vulgare Y25]
 gi|308755294|gb|ADO43223.1| putative N utilization substance protein B [Ketogulonicigenium
           vulgare Y25]
          Length = 147

 Score =  147 bits (373), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 48/144 (33%), Positives = 78/144 (54%), Gaps = 5/144 (3%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           R  ARL AVQAL+Q++  G + T +  E+E +RF A  + +     +  D+  FR ++  
Sbjct: 2   RSAARLYAVQALFQMEAAGVTVTRVTREFEDFRFGASIDGEE---LVEGDVTLFRTLMQD 58

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
            ++ +  ID +    L  KW  +R+D  L ++ RA   E +     P +V+I E++ IA 
Sbjct: 59  AVNNQAQIDQMTDRALVSKWPIARIDPTLRALFRAAGAEFM-LKETPAKVVIVEFMDIAS 117

Query: 136 DFFYG-DEPKFINAVLDKVSRKEE 158
            F     EPKF+NAVLD ++R+  
Sbjct: 118 AFSADPKEPKFVNAVLDHMAREAN 141


>gi|288941488|ref|YP_003443728.1| NusB antitermination factor [Allochromatium vinosum DSM 180]
 gi|288896860|gb|ADC62696.1| NusB antitermination factor [Allochromatium vinosum DSM 180]
          Length = 171

 Score =  147 bits (373), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 38/168 (22%), Positives = 69/168 (41%), Gaps = 16/168 (9%)

Query: 1   MTIQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYET-----------YRF 49
           MT  +N + +     R  +R  A  ALYQ  + G     I                    
Sbjct: 1   MTTPENPRPISP---RSQSRRYAALALYQWRLTGDDPMAIKRHLLDDPKWLDAVAASLNG 57

Query: 50  CADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILR 109
            +D +        + ++E    +++GV      ID  +   L      S++D +  +ILR
Sbjct: 58  VSDEDELAAEDRFNFNVELLDELLNGVPTHIDAIDAQLDRFLDR--PISQVDPVELAILR 115

Query: 110 AGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKE 157
            G  E++   ++P  V I+E V +       +  K++N VLDK++R++
Sbjct: 116 LGAYEILFSDNIPDRVAINEAVELTKLLGAHEGHKYVNGVLDKIARRK 163


>gi|222153656|ref|YP_002562833.1| transcription antitermination protein NusB [Streptococcus uberis
           0140J]
 gi|254772659|sp|B9DVJ4|NUSB_STRU0 RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|222114469|emb|CAR43313.1| N utilization substance protein B homolog (NusB protein)
           [Streptococcus uberis 0140J]
          Length = 142

 Score =  147 bits (373), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 37/145 (25%), Positives = 63/145 (43%), Gaps = 9/145 (6%)

Query: 14  HRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVII 73
           + R   R  A QAL+ ++  G   +     Y  Y   +D E D+          +   ++
Sbjct: 7   NSRRDLRERAFQALFNMEHGGDFLSASQFAY-DYDKVSDQEHDIP--------AFLLTLV 57

Query: 74  HGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCI 133
           +GV++ K  +D +I   L   WS  RL +   ++LR G+ E+      P  V ++E + I
Sbjct: 58  NGVVNHKDELDAIIKEHLKAGWSIERLTLTDRTMLRLGLYEIKFFEETPDRVALNEIIEI 117

Query: 134 AHDFFYGDEPKFINAVLDKVSRKEE 158
           A  +      KFIN +L +     E
Sbjct: 118 AKKYSDETSAKFINGLLSQFVSDSE 142


>gi|85858025|ref|YP_460227.1| transcription termination factor NusB [Syntrophus aciditrophicus
           SB]
 gi|119390838|sp|Q2LQK4|NUSB_SYNAS RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|85721116|gb|ABC76059.1| transcription termination factor NusB [Syntrophus aciditrophicus
           SB]
          Length = 161

 Score =  147 bits (373), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 40/149 (26%), Positives = 67/149 (44%), Gaps = 12/149 (8%)

Query: 14  HRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVII 73
            +R IAR  A+Q LY ++++     E I  Y  +    +  +D           +  ++I
Sbjct: 13  RQRRIAREIALQVLYSLEVVEMEAGEAIELYWAH---YEAPMDA--------RPFSSLLI 61

Query: 74  HGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCI 133
            G    +  ID LI  C +  WS +R+  +  SILR  V EL  C  +P +V ++E + +
Sbjct: 62  EGAWKHRDQIDSLIGGC-SANWSIARMSKVDKSILRMAVFELCFCEDIPPKVTMNEAIDL 120

Query: 134 AHDFFYGDEPKFINAVLDKVSRKEEIKRS 162
              +   +   FIN +LD +  K   K  
Sbjct: 121 GKVYGSENSGSFINGILDALYAKIHKKND 149


>gi|30410822|ref|NP_660779.2| transcription antitermination protein NusB [Buchnera aphidicola
           str. Sg (Schizaphis graminum)]
          Length = 142

 Score =  147 bits (373), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 42/141 (29%), Positives = 64/141 (45%), Gaps = 13/141 (9%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           R  AR  A+Q LY  +I   +  +   E+             E    ++D+ +F  +I G
Sbjct: 12  RRKARACALQMLYSWEISQNNIKDSAIEFLK-----------EKNKKNIDIIYFYELIIG 60

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
           +    + ID L+   L+   S   L  I  +ILR    EL +   +P +V I+E + +A 
Sbjct: 61  ITYNCRSIDDLMKPYLSR--SLKELGQIEKAILRISFYELYKRKDIPYKVSINEGIELAK 118

Query: 136 DFFYGDEPKFINAVLDKVSRK 156
            F   D  KFIN VLDK + K
Sbjct: 119 LFGSEDSHKFINGVLDKAALK 139


>gi|219681813|ref|YP_002468199.1| transcription antitermination protein NusB [Buchnera aphidicola
           str. 5A (Acyrthosiphon pisum)]
 gi|219682368|ref|YP_002468752.1| transcription antitermination protein NusB [Buchnera aphidicola
           str. Tuc7 (Acyrthosiphon pisum)]
 gi|257471515|ref|ZP_05635514.1| transcription antitermination protein NusB [Buchnera aphidicola
           str. LSR1 (Acyrthosiphon pisum)]
 gi|254772618|sp|B8D9P0|NUSB_BUCA5 RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|254772619|sp|B8D7Z2|NUSB_BUCAT RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|219622101|gb|ACL30257.1| transcription antitermination protein NusB [Buchnera aphidicola
           str. Tuc7 (Acyrthosiphon pisum)]
 gi|219624656|gb|ACL30811.1| transcription antitermination protein NusB [Buchnera aphidicola
           str. 5A (Acyrthosiphon pisum)]
 gi|311086189|gb|ADP66271.1| transcription antitermination protein NusB [Buchnera aphidicola
           str. LL01 (Acyrthosiphon pisum)]
 gi|311087353|gb|ADP67433.1| transcription antitermination protein NusB [Buchnera aphidicola
           str. JF99 (Acyrthosiphon pisum)]
          Length = 143

 Score =  147 bits (373), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 44/143 (30%), Positives = 66/143 (46%), Gaps = 14/143 (9%)

Query: 10  LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF 69
           +K S RR  AR  A+Q LY  +I   +  E    +             E    ++D+ +F
Sbjct: 1   MKPSFRR-KARACALQVLYSWEISHNNIKESAIYFLK-----------EKNKKNIDIVYF 48

Query: 70  RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISE 129
             +I G+    ++ID L+   L    S   L  I  +ILR    EL + + +P +V I+E
Sbjct: 49  YELIIGITYDCKNIDNLMKPYLFR--SLKELGHIERAILRISFYELHKRNDIPYKVSINE 106

Query: 130 YVCIAHDFFYGDEPKFINAVLDK 152
            + +A  F   D  KFIN VLDK
Sbjct: 107 GIELAKLFGSEDSHKFINGVLDK 129


>gi|294628337|ref|ZP_06706897.1| transcription antitermination factor NusB [Streptomyces sp. e14]
 gi|292831670|gb|EFF90019.1| transcription antitermination factor NusB [Streptomyces sp. e14]
          Length = 147

 Score =  147 bits (373), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 36/147 (24%), Positives = 66/147 (44%), Gaps = 12/147 (8%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           R  AR  A Q L++ D  G     +++++         +  V         E+   ++ G
Sbjct: 4   RNTARKRAFQILFEGDQRGVGVLTVLADWVRLSRSDTRQPPVS--------EYTMQLVEG 55

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
             +    ID L++      W+  R+ ++  +ILR G  ELI     P  V++ E V +A 
Sbjct: 56  YAEHATRIDELLAQYAV-GWTLDRMPVVDRNILRLGAYELIWVDETPDAVVLDEMVQLAK 114

Query: 136 DFFYGDEPKFINAVLDKVSRKEEIKRS 162
           +F   + P F+N +L ++   +E+K S
Sbjct: 115 EFSTDESPSFVNGLLGRL---KELKPS 138


>gi|58583474|ref|YP_202490.1| transcription antitermination protein NusB [Xanthomonas oryzae pv.
           oryzae KACC10331]
 gi|84625287|ref|YP_452659.1| transcription antitermination protein NusB [Xanthomonas oryzae pv.
           oryzae MAFF 311018]
 gi|188575269|ref|YP_001912198.1| transcription antitermination protein NusB [Xanthomonas oryzae pv.
           oryzae PXO99A]
 gi|75434146|sp|Q5GW16|NUSB_XANOR RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|119390848|sp|Q2NZ92|NUSB_XANOM RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|238689535|sp|B2SNW5|NUSB_XANOP RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|58428068|gb|AAW77105.1| transcription termination factor NusB [Xanthomonas oryzae pv.
           oryzae KACC10331]
 gi|84369227|dbj|BAE70385.1| N utilization substance protein B homolog [Xanthomonas oryzae pv.
           oryzae MAFF 311018]
 gi|188519721|gb|ACD57666.1| transcription antitermination factor NusB [Xanthomonas oryzae pv.
           oryzae PXO99A]
          Length = 156

 Score =  147 bits (373), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 33/140 (23%), Positives = 60/140 (42%), Gaps = 13/140 (9%)

Query: 25  QALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHID 84
           QA+Y   I G    ++I+++             E  +   DL +F  ++ GV+  +  +D
Sbjct: 30  QAVYAWQISGGFAKQVIAQFAH-----------EQAHEVADLAYFENLVEGVLTNRAELD 78

Query: 85  LLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPK 144
             ++  L        +D I  ++LR    EL+    VP  V+I+E +  A  F       
Sbjct: 79  TALTPYLDRG--VEEVDAIERAVLRLAAYELLYRQDVPYRVVINEAIETAKRFGSEHGHT 136

Query: 145 FINAVLDKVSRKEEIKRSGC 164
           ++N VLD+ + +     SG 
Sbjct: 137 YVNGVLDRAAVEWRKVESGA 156


>gi|319794181|ref|YP_004155821.1| nusb antitermination factor [Variovorax paradoxus EPS]
 gi|315596644|gb|ADU37710.1| NusB antitermination factor [Variovorax paradoxus EPS]
          Length = 178

 Score =  147 bits (373), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 44/170 (25%), Positives = 75/170 (44%), Gaps = 17/170 (10%)

Query: 1   MTIQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESV 60
           +T    +K    S+ R  AR  A+QALYQ  +     T+I           D      + 
Sbjct: 20  LTSTGARKASAKSN-RSRAREFALQALYQHLVGRNDPTDI-----------DHFTRDLAG 67

Query: 61  YLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHS 120
           +   D   +  ++HG +D  + +D LI   L  K  F  +  I  +++  GV E   C  
Sbjct: 68  FHKADAAHYDALLHGSIDNAEQLDALIRPLLDRK--FEEISPIEHAVMWIGVYEFQNCPD 125

Query: 121 VPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVS---RKEEIKRSGCVSA 167
           VP  V+++E + +A +F   D  K++NAVL+ ++   R  E++       
Sbjct: 126 VPWRVVLNECIELAKEFGGTDGHKYVNAVLNGLAPQLRPLEVEADRASGK 175


>gi|311086765|gb|ADP66846.1| transcription antitermination protein NusB [Buchnera aphidicola
           str. TLW03 (Acyrthosiphon pisum)]
          Length = 143

 Score =  147 bits (373), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 44/143 (30%), Positives = 66/143 (46%), Gaps = 14/143 (9%)

Query: 10  LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF 69
           +K S RR  AR  A+Q LY  +I   +  E    +             E    ++D+ +F
Sbjct: 1   MKPSFRR-KARACALQVLYSWEISHNNIKESAIYFLK-----------EKNKKNIDIVYF 48

Query: 70  RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISE 129
             +I G+    ++ID L+   L    S   L  I  +ILR    EL + + +P +V I+E
Sbjct: 49  YELIIGITYDCKNIDNLMKPYLFR--SLKELGHIERAILRISFYELHKRNDIPYKVSINE 106

Query: 130 YVCIAHDFFYGDEPKFINAVLDK 152
            + +A  F   D  KFIN VLDK
Sbjct: 107 GIELAKLFGSEDSHKFINGVLDK 129


>gi|317122010|ref|YP_004102013.1| NusB antitermination factor [Thermaerobacter marianensis DSM 12885]
 gi|315591990|gb|ADU51286.1| NusB antitermination factor [Thermaerobacter marianensis DSM 12885]
          Length = 237

 Score =  147 bits (372), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 39/152 (25%), Positives = 63/152 (41%), Gaps = 15/152 (9%)

Query: 21  LAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRK 80
             A+Q L+Q +  G      +         A  E D         L +   +  GV  R+
Sbjct: 18  EIALQVLFQWEAAGNPLEAGLE-------WAAGEYDPGEEV----LAFAAELCRGVTRRR 66

Query: 81  QHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIE--CHSVPVEVIISEYVCIAHDFF 138
             ID LI+      W   RL  +  ++LR G+ EL+      VP  V I+E V +A  + 
Sbjct: 67  LDIDGLIARY-ARDWDLERLARVDRNVLRLGIYELLYAGRPDVPPPVAINEAVELAKRYS 125

Query: 139 YGDEPKFINAVLDKVSRKEEIKR-SGCVSAIT 169
             D  +F+N +L +++R   +   SG V+   
Sbjct: 126 SEDAARFVNGILGQLARDRGLATGSGGVAPAA 157


>gi|138895967|ref|YP_001126420.1| transcription antitermination protein NusB [Geobacillus
           thermodenitrificans NG80-2]
 gi|166215689|sp|A4IQS1|NUSB_GEOTN RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|134267480|gb|ABO67675.1| N utilization substance protein B [Geobacillus thermodenitrificans
           NG80-2]
          Length = 130

 Score =  147 bits (372), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 43/139 (30%), Positives = 61/139 (43%), Gaps = 16/139 (11%)

Query: 15  RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74
           +R  AR  A+QAL+QID+      E I            E+D           + R ++ 
Sbjct: 2   KRHEAREKALQALFQIDVGHIPPDEAIG-----NVTGSGEVD----------PFLRQLVF 46

Query: 75  GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134
            V++ +  ID L+ S L EKW   R+  +   ILR    E+     VPV V + E V +A
Sbjct: 47  DVIEHRAEIDELLRSNL-EKWKLERVANVDRVILRMATYEMKYVDDVPVSVSLDEAVELA 105

Query: 135 HDFFYGDEPKFINAVLDKV 153
             F       F+N VL KV
Sbjct: 106 KKFGDWKSGSFVNGVLSKV 124


>gi|119356339|ref|YP_910983.1| NusB antitermination factor [Chlorobium phaeobacteroides DSM 266]
 gi|166215679|sp|A1BDT2|NUSB_CHLPD RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|119353688|gb|ABL64559.1| NusB antitermination factor [Chlorobium phaeobacteroides DSM 266]
          Length = 165

 Score =  147 bits (372), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 38/153 (24%), Positives = 68/153 (44%), Gaps = 14/153 (9%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           R   R   +QALY +++         +   T     D             +++F +++  
Sbjct: 5   RRQIREKILQALYTLELRDTDIESAANWLLTKEIQEDPNA----------MKFFNLLLKN 54

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
           + + ++ ID  I+   T  W  SR+ +I  +ILR  + EL+ C  +P +V I+E + IA 
Sbjct: 55  IKEHREEIDQYIARH-TFNWDMSRIAIIDKNILRMALAELLYCEDIPPKVSINEAIEIAK 113

Query: 136 DF-FYGDEPKFINAVLDKVSRKEEIKRSGCVSA 167
            F       KF+N +LD +    E+K  G +  
Sbjct: 114 KFSSTDKSSKFVNGILDAIF--NELKAEGKIHK 144


>gi|302561734|ref|ZP_07314076.1| transcription antitermination factor NusB [Streptomyces
           griseoflavus Tu4000]
 gi|302479352|gb|EFL42445.1| transcription antitermination factor NusB [Streptomyces
           griseoflavus Tu4000]
          Length = 143

 Score =  147 bits (372), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 37/147 (25%), Positives = 68/147 (46%), Gaps = 12/147 (8%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           R  AR  A Q +++ D  G     +++++  +      +  V         E+   ++ G
Sbjct: 4   RNTARKRAFQIIFEGDQRGAEVLTVLADWIRHARSDTRQPPVS--------EYTMQLVEG 55

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
             +  + ID LI    +  W+  R+ ++  SILR G  ELI     P  V++ E V +A 
Sbjct: 56  YAEHAKRIDELIGQY-SVGWTLDRMPVVDRSILRLGAYELIWVDETPDAVVLDEMVQLAK 114

Query: 136 DFFYGDEPKFINAVLDKVSRKEEIKRS 162
           +F   + P F+N +L ++   +E+K S
Sbjct: 115 EFSTDESPSFVNGLLGRL---KELKPS 138


>gi|119502844|ref|ZP_01624929.1| transcription antitermination protein NusB [marine gamma
           proteobacterium HTCC2080]
 gi|119461190|gb|EAW42280.1| transcription antitermination protein NusB [marine gamma
           proteobacterium HTCC2080]
          Length = 148

 Score =  147 bits (372), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 42/134 (31%), Positives = 66/134 (49%), Gaps = 13/134 (9%)

Query: 22  AAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQ 81
            A+Q LYQ  +   +  EI +E+            +++ + HVD E++R ++ GV+    
Sbjct: 17  FALQGLYQWSMTRANLAEIEAEFR-----------IDNDFSHVDGEYYRSLLTGVVQDAG 65

Query: 82  HIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGD 141
            +D      L        LD +  ++LR G  EL E   VP  V+I+E V +A  F   D
Sbjct: 66  DLDSSFEQLLDR--PLDELDPVERALLRLGTFELKERIDVPYRVVINESVALAKKFGATD 123

Query: 142 EPKFINAVLDKVSR 155
             ++IN VLDKV+R
Sbjct: 124 SYRYINGVLDKVAR 137


>gi|297198328|ref|ZP_06915725.1| transcription antitermination factor NusB [Streptomyces sviceus
           ATCC 29083]
 gi|197714379|gb|EDY58413.1| transcription antitermination factor NusB [Streptomyces sviceus
           ATCC 29083]
          Length = 144

 Score =  147 bits (372), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 34/138 (24%), Positives = 63/138 (45%), Gaps = 9/138 (6%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           R  AR  A Q L++ D        +++++  +      +  V         E+   ++ G
Sbjct: 4   RNTARKRAFQILFEGDQRDADVLTVLADWIRHSREDTRQPPVS--------EYTMQLVEG 55

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
             +  Q ID LI+   +  W+  R+ ++  +ILR G  ELI     P  V++ E V +A 
Sbjct: 56  YAEHAQRIDELIAQY-SVGWTLDRMPVVDRNILRLGAYELIWADETPDAVVLDEMVQLAK 114

Query: 136 DFFYGDEPKFINAVLDKV 153
           +F   + P F+N +L ++
Sbjct: 115 EFSTDESPSFVNGLLGRL 132


>gi|158522086|ref|YP_001529956.1| NusB antitermination factor [Desulfococcus oleovorans Hxd3]
 gi|226738897|sp|A8ZTU6|NUSB_DESOH RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|158510912|gb|ABW67879.1| NusB antitermination factor [Desulfococcus oleovorans Hxd3]
          Length = 154

 Score =  147 bits (372), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 31/143 (21%), Positives = 64/143 (44%), Gaps = 9/143 (6%)

Query: 14  HRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVII 73
             R  +R  A+Q L+  D+      +  +  E +                 +   F  + 
Sbjct: 2   ASRRRSRELALQFLFSYDLNAAGAGDFDAWMEDFC--------ARFNLSEKNFPHFFTLA 53

Query: 74  HGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCI 133
            GV +R + ++ L++   +E W  SR+  +  +++R  + E++ C  VP  V I+E + I
Sbjct: 54  QGVKNRWEKLNDLLAES-SEHWKLSRMSGVDRNVMRIAIFEMLYCDDVPPRVAINEAIEI 112

Query: 134 AHDFFYGDEPKFINAVLDKVSRK 156
              +   +   FIN VLD+++++
Sbjct: 113 GKKYGTDESGAFINGVLDRINKE 135


>gi|116327424|ref|YP_797144.1| transcription antitermination protein NusB [Leptospira
           borgpetersenii serovar Hardjo-bovis L550]
 gi|116331982|ref|YP_801700.1| transcription antitermination protein NusB [Leptospira
           borgpetersenii serovar Hardjo-bovis JB197]
 gi|122280285|sp|Q04Q78|NUSB_LEPBJ RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|122284775|sp|Q054N4|NUSB_LEPBL RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|116120168|gb|ABJ78211.1| Transcription antitermination protein [Leptospira borgpetersenii
           serovar Hardjo-bovis L550]
 gi|116125671|gb|ABJ76942.1| Transcription antitermination protein [Leptospira borgpetersenii
           serovar Hardjo-bovis JB197]
          Length = 138

 Score =  147 bits (372), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 42/148 (28%), Positives = 74/148 (50%), Gaps = 13/148 (8%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           R  +R  AV ALYQ+++ G    E++  ++ Y    + E          + ++   I++G
Sbjct: 4   RRTSREIAVMALYQLELTGPPLKEVLK-FKWYDKKTEPE----------ERDFAVSIVNG 52

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
           V+  ++ ID LI    ++ W FSR+ ++  +ILR  V  L+    VP  V I E V +  
Sbjct: 53  VVKNQEQIDTLIKKY-SKNWDFSRISIVNKAILRLSVFALLYSWEVPKNVTIDEAVELTK 111

Query: 136 DFFYGDEPKFINAVLDKVSRKEEIKRSG 163
           +F   +  +F+N +LD + +  E K  G
Sbjct: 112 EFESEESARFVNGILDAILK-NETKSDG 138


>gi|24213164|ref|NP_710645.1| transcription antitermination protein NusB [Leptospira interrogans
           serovar Lai str. 56601]
 gi|32171656|sp|Q8F8T8|NUSB_LEPIN RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|61214188|sp|Q72V97|NUSB_LEPIC RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|24193877|gb|AAN47663.1| transcription antitermination protein NusB [Leptospira interrogans
           serovar Lai str. 56601]
          Length = 138

 Score =  147 bits (372), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 42/148 (28%), Positives = 74/148 (50%), Gaps = 13/148 (8%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           R  +R  AV ALYQ+++      E++  ++ Y    + E          + ++   I++G
Sbjct: 4   RRTSREIAVMALYQLELTQPPLKEVLK-FKWYDKKTEPE----------ERDFAVSIVNG 52

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
           V+  ++ ID LI    ++ W FSR+ ++  +ILR  +  L+    VP  V I E V +  
Sbjct: 53  VVKNQEQIDTLIKKY-SKNWDFSRISIVNKAILRLSIYALLYTWEVPKNVTIDEAVELTK 111

Query: 136 DFFYGDEPKFINAVLDKVSRKEEIKRSG 163
           +F   +  +F+N VLD + +  EIK  G
Sbjct: 112 EFESEESARFVNGVLDAILK-NEIKSDG 138


>gi|289663670|ref|ZP_06485251.1| transcription antitermination protein NusB [Xanthomonas campestris
           pv. vasculorum NCPPB702]
 gi|289671050|ref|ZP_06492125.1| transcription antitermination protein NusB [Xanthomonas campestris
           pv. musacearum NCPPB4381]
          Length = 156

 Score =  147 bits (372), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 33/140 (23%), Positives = 59/140 (42%), Gaps = 13/140 (9%)

Query: 25  QALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHID 84
           QA+Y   I G    ++I ++             E  +   DL +F  ++ GV+  +  +D
Sbjct: 30  QAVYAWQISGGFAKQVIGQFAH-----------EQAHEVADLAYFENLVEGVLSNRAELD 78

Query: 85  LLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPK 144
             ++  L        +D I  ++LR    EL+    VP  V+I+E +  A  F       
Sbjct: 79  TALTPYLDRG--VEEVDAIERAVLRLAAYELLYRQDVPYRVVINEAIETAKRFGSEHGHT 136

Query: 145 FINAVLDKVSRKEEIKRSGC 164
           ++N VLD+ + +     SG 
Sbjct: 137 YVNGVLDRAAVEWRKVESGA 156


>gi|296133218|ref|YP_003640465.1| NusB antitermination factor [Thermincola sp. JR]
 gi|296031796|gb|ADG82564.1| NusB antitermination factor [Thermincola potens JR]
          Length = 142

 Score =  147 bits (372), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 35/144 (24%), Positives = 68/144 (47%), Gaps = 14/144 (9%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISE-YETYRFCADTELDVESVYLHVDLEWFRVIIH 74
           R  AR AA+Q L+QI++ G    +     +  +    + +            ++ R ++ 
Sbjct: 3   RRKAREAALQVLFQIEMAGVEEEKAYEYIFSEFNIGENAQ------------KFCRELVQ 50

Query: 75  GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134
           G +  + +ID +I   ++ +W   R+  +  +I+R  + E++    VP  V I+E + + 
Sbjct: 51  GTLRNRAYIDDIIRE-VSNEWDLYRMANVDRNIIRMALYEMLFREDVPKNVAINEAIELG 109

Query: 135 HDFFYGDEPKFINAVLDKVSRKEE 158
            DF   D  KFIN +L  V++  E
Sbjct: 110 KDFSTADSGKFINGILGYVAKNME 133


>gi|325290021|ref|YP_004266202.1| NusB antitermination factor [Syntrophobotulus glycolicus DSM 8271]
 gi|324965422|gb|ADY56201.1| NusB antitermination factor [Syntrophobotulus glycolicus DSM 8271]
          Length = 146

 Score =  147 bits (372), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 38/145 (26%), Positives = 70/145 (48%), Gaps = 10/145 (6%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           R +AR  A++ LYQID+ G    EI    +   + A      E         + + +I G
Sbjct: 3   RRLARETALKVLYQIDMTG----EISEMDKNIEYWA-----GEFNLPEKHQPFTKQLIEG 53

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
            + +K+ ID +I      +W+  R+ ++  +++R    E++   + P  V ++E + +A 
Sbjct: 54  TLSKKEEIDHMIGQN-AHEWALDRMSVVDRNLMRLASYEMLYLRNTPQRVSLNEAIELAK 112

Query: 136 DFFYGDEPKFINAVLDKVSRKEEIK 160
            F   D  KFIN +LD +  +EE +
Sbjct: 113 KFGGDDSAKFINGILDNLMTQEEKE 137


>gi|295695401|ref|YP_003588639.1| NusB antitermination factor [Bacillus tusciae DSM 2912]
 gi|295411003|gb|ADG05495.1| NusB antitermination factor [Bacillus tusciae DSM 2912]
          Length = 148

 Score =  147 bits (372), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 35/147 (23%), Positives = 70/147 (47%), Gaps = 5/147 (3%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           R  AR   +QAL  +D+ G    E + +    R   + E D        D ++ R ++ G
Sbjct: 3   RRAAREKVLQALVAVDLGGTDAEEALEQVWRLRGDEEAEGDPSPE----DADFARGLLFG 58

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
            ++  + +D ++ +  +  W   R+  +  ++LR  V EL+   + PV V+++E V +A 
Sbjct: 59  TLEEGRRVDGVLRTY-STGWDLDRMASVDRNVLRLAVYELLHVPATPVSVVMNEAVELAK 117

Query: 136 DFFYGDEPKFINAVLDKVSRKEEIKRS 162
            +   +  +F+N VL ++    E  R+
Sbjct: 118 RYSTEESGRFVNGVLARIVAHLEELRT 144


>gi|91788748|ref|YP_549700.1| transcription antitermination protein NusB [Polaromonas sp. JS666]
 gi|119390795|sp|Q129J0|NUSB_POLSJ RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|91697973|gb|ABE44802.1| NusB antitermination factor [Polaromonas sp. JS666]
          Length = 187

 Score =  147 bits (372), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 38/154 (24%), Positives = 64/154 (41%), Gaps = 14/154 (9%)

Query: 1   MTIQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESV 60
           +T    KK    S  R  AR  A+QALYQ  +       I           D        
Sbjct: 34  LTDTGVKKAADKSA-RTRAREFALQALYQHLVGRNDADSI-----------DAFTRDLVG 81

Query: 61  YLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHS 120
           +   D   +  ++HG ++    +D +I+  L      + +  +  ++L  G  E  +C  
Sbjct: 82  FHKADSAHYDALLHGCIEGASALDAVITPLLDR--PMAEISPVEHAVLWMGAYEFRQCLD 139

Query: 121 VPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVS 154
           VP  V+I+E + +A  F   D  K++N VL K++
Sbjct: 140 VPYRVVINECIELAKAFGGTDGHKYVNGVLHKMA 173


>gi|225174889|ref|ZP_03728886.1| NusB antitermination factor [Dethiobacter alkaliphilus AHT 1]
 gi|225169529|gb|EEG78326.1| NusB antitermination factor [Dethiobacter alkaliphilus AHT 1]
          Length = 138

 Score =  147 bits (371), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 39/146 (26%), Positives = 67/146 (45%), Gaps = 12/146 (8%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           R +AR  A + L+Q DI        IS+              E+      +E+ R ++ G
Sbjct: 3   RRLAREIAFKTLFQYDIGKNEVEPTISQLIE-----------ENGLEGAGVEFSRQLVLG 51

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
            +   + ID  ++  L +KW   RL  +  ++LR    E++    +P  V I+E + ++ 
Sbjct: 52  TLKNLEAIDKALAGYL-QKWELGRLAAVDRNVLRLAAFEILYREDIPAAVTINEALELSK 110

Query: 136 DFFYGDEPKFINAVLDKVSRKEEIKR 161
            F   +  KF+N VLDK++R  E K 
Sbjct: 111 AFHSEEAAKFLNGVLDKLARHHEGKE 136


>gi|29654709|ref|NP_820401.1| transcription antitermination protein NusB [Coxiella burnetii RSA
           493]
 gi|161829811|ref|YP_001597256.1| transcription antitermination protein NusB [Coxiella burnetii RSA
           331]
 gi|212212219|ref|YP_002303155.1| transcription antitermination protein NusB [Coxiella burnetii
           CbuG_Q212]
 gi|39931899|sp|Q83BT5|NUSB_COXBU RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|189035886|sp|A9KBN6|NUSB_COXBN RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|189035887|sp|A9N8T6|NUSB_COXBR RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|238055350|sp|B6IZ82|NUSB_COXB2 RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|29541977|gb|AAO90915.1| N utilization substance protein B [Coxiella burnetii RSA 493]
 gi|161761678|gb|ABX77320.1| transcription antitermination factor NusB [Coxiella burnetii RSA
           331]
 gi|212010629|gb|ACJ18010.1| N utilization substance protein B [Coxiella burnetii CbuG_Q212]
          Length = 138

 Score =  147 bits (371), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 40/141 (28%), Positives = 69/141 (48%), Gaps = 13/141 (9%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           R  AR  A+QALYQ          +IS++      +DT           D+ +F+ ++ G
Sbjct: 6   RHNARRYALQALYQWFFCETKPDALISQFMEEHDLSDT-----------DVAYFKEVVTG 54

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
            +     ID L+++ L  K   S L+ +  S+LR  + EL+    VP +V+I E + +  
Sbjct: 55  TIQHVAIIDELMTAHLDRK--ISALNPVELSVLRLSIYELLHRKEVPYKVVIDEALELVK 112

Query: 136 DFFYGDEPKFINAVLDKVSRK 156
           +F      K++NA+LD +S +
Sbjct: 113 EFGAEAGHKYVNAILDVLSSE 133


>gi|323359977|ref|YP_004226373.1| transcription termination factor [Microbacterium testaceum StLB037]
 gi|323276348|dbj|BAJ76493.1| transcription termination factor [Microbacterium testaceum StLB037]
          Length = 136

 Score =  147 bits (371), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 37/140 (26%), Positives = 66/140 (47%), Gaps = 9/140 (6%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           R  AR  A+  L+Q D+ G     +++        A+ +             + R I+ G
Sbjct: 4   RTKARKRALDILFQADVRGEELPIMLA--------AEAKRAASEPDRQASWLYARDIVDG 55

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
           V+D +  ID  I++  ++ WS  R+  +  ++LR G  E++    VP  V I E V +A 
Sbjct: 56  VIDNRDAIDEQITTF-SKDWSLQRMPAVDRALLRIGTWEILYNDEVPTAVAIDEAVELAK 114

Query: 136 DFFYGDEPKFINAVLDKVSR 155
           +F   D   F++ VL +++R
Sbjct: 115 EFSTDDSGSFVHGVLARIAR 134


>gi|15617061|ref|NP_240274.1| transcription antitermination protein NusB [Buchnera aphidicola
           str. APS (Acyrthosiphon pisum)]
 gi|11134003|sp|P57535|NUSB_BUCAI RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|25299794|pir||H84983 N utilization substance protein B [imported] - Buchnera sp.
           (strain APS)
 gi|10039126|dbj|BAB13160.1| N utilization substance protein B [Buchnera aphidicola str. APS
           (Acyrthosiphon pisum)]
          Length = 143

 Score =  147 bits (371), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 44/143 (30%), Positives = 66/143 (46%), Gaps = 14/143 (9%)

Query: 10  LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF 69
           +K S RR  AR  A+Q LY  +I   +  E    +             E    ++D+ +F
Sbjct: 1   MKPSFRR-KARACALQVLYSWEISHNNIKESAIYFLK-----------EKNKKNIDIVYF 48

Query: 70  RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISE 129
             +I G+    ++ID L+   L    S   L  I  +ILR    EL + + +P +V I+E
Sbjct: 49  YELIIGITYDCKNIDNLMKPYLFR--SLKELGHIERAILRISFYELHKRNDIPYKVSINE 106

Query: 130 YVCIAHDFFYGDEPKFINAVLDK 152
            + +A  F   D  KFIN VLDK
Sbjct: 107 GIELAKLFGSEDSHKFINGVLDK 129


>gi|254383581|ref|ZP_04998931.1| transcription antitermination protein NusB [Streptomyces sp. Mg1]
 gi|194342476|gb|EDX23442.1| transcription antitermination protein NusB [Streptomyces sp. Mg1]
          Length = 144

 Score =  147 bits (371), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 38/147 (25%), Positives = 67/147 (45%), Gaps = 12/147 (8%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           R  AR  A Q L++ D  G    ++++++  +    D +  V          +   ++ G
Sbjct: 4   RSNARKRAFQILFEADQRGVPVRDVLADWIRHARSDDRQPPVS--------AFTMDLVEG 55

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
             D+   ID LI +     W   R+ ++  +I+R G  ELI     P  V I E V +A 
Sbjct: 56  YADKVNRIDDLIITYAV-DWDLDRMPVVDRNIVRLGAYELIWVDDTPDAVAIDEAVQLAK 114

Query: 136 DFFYGDEPKFINAVLDKVSRKEEIKRS 162
           +F   + P F+N +L   +R +++K S
Sbjct: 115 EFSTDESPSFVNGLL---ARFKDLKPS 138


>gi|169629920|ref|YP_001703569.1| transcription antitermination protein NusB [Mycobacterium abscessus
           ATCC 19977]
 gi|169241887|emb|CAM62915.1| Probable transcription antitermination factor NusB [Mycobacterium
           abscessus]
          Length = 173

 Score =  147 bits (371), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 41/138 (29%), Positives = 66/138 (47%), Gaps = 9/138 (6%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           R  AR  AV  L++ +    +   +  E    R  A ++ D++ +       +   + HG
Sbjct: 28  RRKARKRAVDLLFEAEAREMTAAGVADE---RRALAASKPDIDPLN-----PYTVSVAHG 79

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
           V +   HID LISS L + W+ +RL  +  +ILR  V EL+    VP  V + E V +A 
Sbjct: 80  VTEHAAHIDELISSHL-QGWTLARLPAVDRAILRVAVWELLHAQDVPEVVAVDEAVELAK 138

Query: 136 DFFYGDEPKFINAVLDKV 153
                + P F+N VL ++
Sbjct: 139 QLSTDESPAFVNGVLGQL 156


>gi|253699860|ref|YP_003021049.1| NusB antitermination factor [Geobacter sp. M21]
 gi|259514841|sp|C6E3M6|NUSB_GEOSM RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|251774710|gb|ACT17291.1| NusB antitermination factor [Geobacter sp. M21]
          Length = 145

 Score =  147 bits (371), Expect = 7e-34,   Method: Composition-based stats.
 Identities = 37/140 (26%), Positives = 67/140 (47%), Gaps = 6/140 (4%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEY-ETYRFCADTELDVESVYLHVDLEWFRVIIH 74
           R   R  A+QALY  D++       +    E++    +  L V S        +   +++
Sbjct: 4   RREGRELALQALYSKDLVLQDANSTLKRITESFSEGEEPTLSVNSKAY----AFASELVN 59

Query: 75  GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134
           GV+   Q ID  I+   ++ WS +R+  +  +ILR  V EL+    +P  V ++E + +A
Sbjct: 60  GVVSNLQQIDSRIAEK-SKHWSMARMARVDLNILRLAVFELLYRPDIPKNVTMNEAIEVA 118

Query: 135 HDFFYGDEPKFINAVLDKVS 154
             F   D   F+N +LD+++
Sbjct: 119 KKFGADDSASFVNGILDEIA 138


>gi|253682288|ref|ZP_04863085.1| transcription antitermination factor NusB [Clostridium botulinum D
           str. 1873]
 gi|253562000|gb|EES91452.1| transcription antitermination factor NusB [Clostridium botulinum D
           str. 1873]
          Length = 135

 Score =  147 bits (371), Expect = 7e-34,   Method: Composition-based stats.
 Identities = 40/141 (28%), Positives = 67/141 (47%), Gaps = 10/141 (7%)

Query: 15  RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74
            R  +R  A++ L+++ I      EII  ++          + ++    VD E+   II 
Sbjct: 2   NRRKSREIAMKLLFEMSINKEELKEIIHNFKE---------NTDTSLKDVDFEYINKIIQ 52

Query: 75  GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134
           GV D  + ID  I   LT+ W  +RL  I  +ILR    E+I    +P +V ++E + +A
Sbjct: 53  GVQDNIETIDSKIEENLTK-WKLNRLSKIDLTILRISTYEIIFVEDIPEKVAVNEGIELA 111

Query: 135 HDFFYGDEPKFINAVLDKVSR 155
             +   + P FIN VL  + +
Sbjct: 112 KKYSAENSPAFINGVLGNMMK 132


>gi|226949184|ref|YP_002804275.1| N utilization substance protein B [Clostridium botulinum A2 str.
           Kyoto]
 gi|254772625|sp|C1FPB3|NUSB_CLOBJ RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|226844538|gb|ACO87204.1| N utilization substance protein B [Clostridium botulinum A2 str.
           Kyoto]
          Length = 143

 Score =  147 bits (371), Expect = 7e-34,   Method: Composition-based stats.
 Identities = 44/142 (30%), Positives = 68/142 (47%), Gaps = 4/142 (2%)

Query: 15  RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCAD--TELDVESVYLH-VDLEWFRV 71
            R  +R  A++ L+Q  + G +  E +   +  R   +   E D ESV L  VD+++ + 
Sbjct: 2   NRRKSREVAMRLLFQTTLNGENLEEALENLKDVRESEEITKEKDYESVDLKDVDIDYVKR 61

Query: 72  IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
           II G+ + K+ ID  I   L + W   RL  +  SILR    EL     +P  V I+E +
Sbjct: 62  IIKGIEENKEEIDEKIKGNL-KNWKIERLSKVDLSILRLCTYELKFEEDIPNRVSINEAI 120

Query: 132 CIAHDFFYGDEPKFINAVLDKV 153
            +A  +       FIN VL K+
Sbjct: 121 ELAKKYSGEKSATFINGVLGKM 142


>gi|294627702|ref|ZP_06706284.1| transcription antitermination protein NusB [Xanthomonas fuscans
           subsp. aurantifolii str. ICPB 11122]
 gi|294667130|ref|ZP_06732355.1| transcription antitermination protein NusB [Xanthomonas fuscans
           subsp. aurantifolii str. ICPB 10535]
 gi|292598054|gb|EFF42209.1| transcription antitermination protein NusB [Xanthomonas fuscans
           subsp. aurantifolii str. ICPB 11122]
 gi|292603140|gb|EFF46566.1| transcription antitermination protein NusB [Xanthomonas fuscans
           subsp. aurantifolii str. ICPB 10535]
          Length = 156

 Score =  146 bits (370), Expect = 7e-34,   Method: Composition-based stats.
 Identities = 34/140 (24%), Positives = 61/140 (43%), Gaps = 13/140 (9%)

Query: 25  QALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHID 84
           QA+Y   I G    ++I+++             E  +   DL +F  ++ GV+  +  +D
Sbjct: 30  QAVYAWQISGGFAKQVIAQFAH-----------EQAHEVADLAYFENLVEGVLSNRAELD 78

Query: 85  LLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPK 144
             ++  L    S   +D I  ++LR    EL+    VP  V+I+E +  A  F       
Sbjct: 79  TALTPYLDR--SVEEVDAIERAVLRLAAYELLYRQDVPYRVVINEAIETAKRFGSEHGHT 136

Query: 145 FINAVLDKVSRKEEIKRSGC 164
           ++N VLD+ + +     SG 
Sbjct: 137 YVNGVLDRAAVEWRKVESGA 156


>gi|197119391|ref|YP_002139818.1| transcription antitermination factor NusB [Geobacter bemidjiensis
           Bem]
 gi|238690857|sp|B5E853|NUSB_GEOBB RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|197088751|gb|ACH40022.1| transcription antitermination factor NusB [Geobacter bemidjiensis
           Bem]
          Length = 145

 Score =  146 bits (370), Expect = 7e-34,   Method: Composition-based stats.
 Identities = 37/140 (26%), Positives = 67/140 (47%), Gaps = 6/140 (4%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEY-ETYRFCADTELDVESVYLHVDLEWFRVIIH 74
           R   R  A+QALY  D++       +    E++    +  L V S        +   +++
Sbjct: 4   RREGRELALQALYSKDLVLQDANTTLKRITESFSEGEEPTLSVNSKAY----AFASELVN 59

Query: 75  GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134
           GV+   Q ID  I+   ++ WS +R+  +  +ILR  V EL+    +P  V ++E + +A
Sbjct: 60  GVVSNLQAIDSRIAEK-SKHWSMARMARVDLNILRLAVFELLYRPDIPKNVTMNEAIEVA 118

Query: 135 HDFFYGDEPKFINAVLDKVS 154
             F   D   F+N +LD+++
Sbjct: 119 KKFGADDSASFVNGILDEIA 138


>gi|325474207|gb|EGC77395.1| N utilization substance protein B [Treponema denticola F0402]
          Length = 136

 Score =  146 bits (370), Expect = 7e-34,   Method: Composition-based stats.
 Identities = 40/145 (27%), Positives = 68/145 (46%), Gaps = 10/145 (6%)

Query: 12  LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71
           +S  R   R+ A QAL   D+ G     ++ +   + +  +  +   + YL     + ++
Sbjct: 1   MSVGRRRGRILAFQALVAWDVGGA----VLDDLLNFSWQNENSIKDPNSYL-----FPKM 51

Query: 72  IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
           ++ G ++    ID +I   L   W   RL+ +  +ILR  V  LI     P  ++I E +
Sbjct: 52  MVLGTIENITEIDKVIQENLD-NWVIDRLNSVDKAILRLSVYSLIYQKDTPPPIVIDEAI 110

Query: 132 CIAHDFFYGDEPKFINAVLDKVSRK 156
            +A DF   D  KF+NAVLD +  K
Sbjct: 111 NLAKDFGTDDSYKFVNAVLDSIKNK 135


>gi|322412645|gb|EFY03553.1| transcription antitermination protein NusB [Streptococcus
           dysgalactiae subsp. dysgalactiae ATCC 27957]
          Length = 149

 Score =  146 bits (370), Expect = 8e-34,   Method: Composition-based stats.
 Identities = 36/144 (25%), Positives = 66/144 (45%), Gaps = 8/144 (5%)

Query: 14  HRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLE-WFRVI 72
           + R   R  A QAL+ +++ G             +F  D +  V+     ++L  +   +
Sbjct: 7   NSRRDLRERAFQALFSMEMGGDFL-------VASQFAYDYDKVVDEGNEALELPIFLLNL 59

Query: 73  IHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVC 132
           ++GV D K+ +D  IS  L   WS  RL +   ++LR G+ E+   +  P  V ++E + 
Sbjct: 60  VNGVNDHKEELDRTISEHLKTGWSLERLTVTDKTLLRLGLFEIKYFNETPDRVALNEIIE 119

Query: 133 IAHDFFYGDEPKFINAVLDKVSRK 156
           +A  +      KFIN +L +   +
Sbjct: 120 VAKKYSDETSAKFINGLLSQFVSE 143


>gi|283853206|ref|ZP_06370458.1| NusB antitermination factor [Desulfovibrio sp. FW1012B]
 gi|283571379|gb|EFC19387.1| NusB antitermination factor [Desulfovibrio sp. FW1012B]
          Length = 167

 Score =  146 bits (370), Expect = 8e-34,   Method: Composition-based stats.
 Identities = 37/161 (22%), Positives = 67/161 (41%), Gaps = 9/161 (5%)

Query: 1   MTIQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESV 60
           M   ++KK +     R  AR  A + LY     G        E    R  A    DV   
Sbjct: 9   MPESEDKKPV---ASRRKARKQAFECLY-----GLIFESAADERSLRRVFARCPHDVMEG 60

Query: 61  YLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHS 120
                  +   ++ GV   ++ +D LI    ++ W  SR+  +  +ILR  + E++    
Sbjct: 61  EDGAGQAFAWELVQGVWQNQRELDALIVKF-SKNWKLSRIAKVELTILRLALYEILHRSD 119

Query: 121 VPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKR 161
           +P+ V ++E + +A  +   +   FIN +LD V++  +   
Sbjct: 120 IPLRVALNEAIELAKRYGDENSRNFINGILDAVAKAVDSGE 160


>gi|289550704|ref|YP_003471608.1| Transcription termination protein NusB [Staphylococcus lugdunensis
           HKU09-01]
 gi|315658200|ref|ZP_07911072.1| transcription antitermination factor NusB [Staphylococcus
           lugdunensis M23590]
 gi|289180236|gb|ADC87481.1| Transcription termination protein NusB [Staphylococcus lugdunensis
           HKU09-01]
 gi|315496529|gb|EFU84852.1| transcription antitermination factor NusB [Staphylococcus
           lugdunensis M23590]
          Length = 128

 Score =  146 bits (370), Expect = 8e-34,   Method: Composition-based stats.
 Identities = 41/138 (29%), Positives = 60/138 (43%), Gaps = 13/138 (9%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           R  +R  A Q L+Q+++        +S  E   F  D   D+       D  +   ++ G
Sbjct: 3   RKESRTQAFQTLFQLEMKDSD----LSISEAINFIKDDHPDL-------DFTFIHWLVTG 51

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
           V D +  +D  I   L + WS +RL      ILR    EL+     P +VII+E V +  
Sbjct: 52  VKDHEPILDKAIEPHL-KDWSLNRLLKTDRIILRMATFELLHS-DTPPKVIINEAVELTK 109

Query: 136 DFFYGDEPKFINAVLDKV 153
            F   D  KFIN VL  +
Sbjct: 110 QFSDDDHYKFINGVLSNI 127


>gi|22537833|ref|NP_688684.1| transcription antitermination protein NusB [Streptococcus
           agalactiae 2603V/R]
 gi|25011777|ref|NP_736172.1| transcription antitermination protein NusB [Streptococcus
           agalactiae NEM316]
 gi|76787394|ref|YP_330307.1| transcription antitermination protein NusB [Streptococcus
           agalactiae A909]
 gi|76798712|ref|ZP_00780933.1| transcription antitermination factor NusB [Streptococcus agalactiae
           18RS21]
 gi|77406598|ref|ZP_00783645.1| transcription antitermination factor NusB [Streptococcus agalactiae
           H36B]
 gi|77409287|ref|ZP_00785993.1| transcription antitermination factor NusB [Streptococcus agalactiae
           COH1]
 gi|77412442|ref|ZP_00788747.1| transcription antitermination factor NusB [Streptococcus agalactiae
           CJB111]
 gi|77413939|ref|ZP_00790114.1| transcription antitermination factor NusB [Streptococcus agalactiae
           515]
 gi|54037925|sp|P65581|NUSB_STRA5 RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|54041675|sp|P65580|NUSB_STRA3 RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|119390832|sp|Q3JZJ6|NUSB_STRA1 RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|22534728|gb|AAN00557.1|AE014269_1 N utilization substance protein B [Streptococcus agalactiae
           2603V/R]
 gi|24413317|emb|CAD47396.1| Unknown [Streptococcus agalactiae NEM316]
 gi|76562451|gb|ABA45035.1| transcription antitermination factor NusB [Streptococcus agalactiae
           A909]
 gi|76585937|gb|EAO62474.1| transcription antitermination factor NusB [Streptococcus agalactiae
           18RS21]
 gi|77160024|gb|EAO71160.1| transcription antitermination factor NusB [Streptococcus agalactiae
           515]
 gi|77161506|gb|EAO72512.1| transcription antitermination factor NusB [Streptococcus agalactiae
           CJB111]
 gi|77172119|gb|EAO75282.1| transcription antitermination factor NusB [Streptococcus agalactiae
           COH1]
 gi|77174791|gb|EAO77613.1| transcription antitermination factor NusB [Streptococcus agalactiae
           H36B]
 gi|319745636|gb|EFV97936.1| transcription antitermination factor NusB [Streptococcus agalactiae
           ATCC 13813]
          Length = 144

 Score =  146 bits (370), Expect = 8e-34,   Method: Composition-based stats.
 Identities = 36/138 (26%), Positives = 59/138 (42%), Gaps = 7/138 (5%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           R   R  A Q L+ ++  G              F    +  V    +     +   +++G
Sbjct: 9   RRDLRERAFQTLFSLETGGEFIDAA-------HFAYGYDKTVSEDKVLEVPIFLLNLVNG 61

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
           V+D K  +D LISS L   WS  RL ++  S+LR G+ E+      P  V ++E + IA 
Sbjct: 62  VVDHKDELDTLISSHLKSGWSLERLTLVDKSLLRLGLYEIKYFDETPDRVALNEIIEIAK 121

Query: 136 DFFYGDEPKFINAVLDKV 153
            +      KF+N +L + 
Sbjct: 122 KYSDETSAKFVNGLLSQF 139


>gi|254556506|ref|YP_003062923.1| transcription antitermination protein NusB [Lactobacillus plantarum
           JDM1]
 gi|308180449|ref|YP_003924577.1| transcription antitermination protein NusB [Lactobacillus plantarum
           subsp. plantarum ST-III]
 gi|254045433|gb|ACT62226.1| transcription antitermination protein NusB [Lactobacillus plantarum
           JDM1]
 gi|308045940|gb|ADN98483.1| transcription antitermination protein NusB [Lactobacillus plantarum
           subsp. plantarum ST-III]
          Length = 139

 Score =  146 bits (370), Expect = 8e-34,   Method: Composition-based stats.
 Identities = 35/146 (23%), Positives = 60/146 (41%), Gaps = 9/146 (6%)

Query: 12  LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71
           +S  R   R  A QAL+ ++    +    + +           L+ E         +   
Sbjct: 1   MSLTRHEIREKAFQALFALNANPDADENQLFQQL---------LNPEEADAVEIPAYLST 51

Query: 72  IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
           ++ GV + +  +D  I   L++KWS  RL      ILR    EL     VP +V ++E +
Sbjct: 52  LVTGVREHQAELDAQIQPYLSQKWSLDRLAKTDLIILRIAFFELQFVDDVPAKVAVNEAI 111

Query: 132 CIAHDFFYGDEPKFINAVLDKVSRKE 157
            +   F      KF++ VL KV + +
Sbjct: 112 ELTKAFSDDRSRKFVSGVLGKVVKNQ 137


>gi|294055107|ref|YP_003548765.1| NusB antitermination factor [Coraliomargarita akajimensis DSM
           45221]
 gi|293614440|gb|ADE54595.1| NusB antitermination factor [Coraliomargarita akajimensis DSM
           45221]
          Length = 153

 Score =  146 bits (370), Expect = 8e-34,   Method: Composition-based stats.
 Identities = 43/166 (25%), Positives = 72/166 (43%), Gaps = 15/166 (9%)

Query: 3   IQDNKKDLKLSHRRGIARLAAVQALYQIDIIG-CSTTEIISEYETYRFCADTELDVESVY 61
           +++    +    +R   R  AVQ LYQ ++       + I+ +                +
Sbjct: 1   MENEDPKVNKRSQRRDCRTCAVQFLYQWEMNKPDELNDAIAVFFE-----------GQGF 49

Query: 62  LHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSV 121
                 +   +IHG +D    ID  I S     W+F R+  I  SILR  + EL+    +
Sbjct: 50  SRNYYAFSEELIHGALDNIAKIDDEIMSH-ANNWTFDRIAKIDLSILRLAIYELLYRTDI 108

Query: 122 PVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRSGCVSA 167
           P  V I+E + ++  F   D  +FIN +LDK+  K++I R    +A
Sbjct: 109 PPIVSINEAIDLSKVFSNPDSKRFINGILDKM--KDKINRPLRKAA 152


>gi|28211246|ref|NP_782190.1| transcription antitermination protein NusB [Clostridium tetani E88]
 gi|32171611|sp|Q894G5|NUSB_CLOTE RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|28203686|gb|AAO36127.1| N utilization substance protein B [Clostridium tetani E88]
          Length = 153

 Score =  146 bits (370), Expect = 8e-34,   Method: Composition-based stats.
 Identities = 45/152 (29%), Positives = 74/152 (48%), Gaps = 11/152 (7%)

Query: 15  RRGIARLAAVQALYQIDIIGCSTTEII---------SEYETYRFCADTELDVESVYL-HV 64
           +R  +R   +Q L+++ I   +  EII          E          E+D E + L  V
Sbjct: 2   KRKKSREMTMQLLFEMMIKKENYVEIINTLKEALTEEEDINSILGEKKEMDEERIDLDEV 61

Query: 65  DLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVE 124
           DLE+    + GV +  + +D  I   L + W+ +RL  +  +ILR    E++  + VP  
Sbjct: 62  DLEYLIHTLKGVEENSKVLDEHIEKYL-KNWTLNRLAKVDLAILRLCSYEILFSNEVPDN 120

Query: 125 VIISEYVCIAHDFFYGDEPKFINAVLDKVSRK 156
           V I+E V +A  +     P FINAVLDK++++
Sbjct: 121 VAINEGVELAKKYGDDKSPAFINAVLDKIAKQ 152


>gi|251783265|ref|YP_002997570.1| transcription antitermination protein NusB [Streptococcus
           dysgalactiae subsp. equisimilis GGS_124]
 gi|242391897|dbj|BAH82356.1| transcription antitermination protein [Streptococcus dysgalactiae
           subsp. equisimilis GGS_124]
          Length = 155

 Score =  146 bits (370), Expect = 8e-34,   Method: Composition-based stats.
 Identities = 37/144 (25%), Positives = 66/144 (45%), Gaps = 8/144 (5%)

Query: 14  HRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLE-WFRVI 72
           + R   R  A QAL+ +++ G             +F  D +  V+     ++L  +   +
Sbjct: 13  NSRRDLRERAFQALFSMEMGGDFL-------VASQFAYDYDKVVDEGNEALELPIFLLNL 65

Query: 73  IHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVC 132
           ++GV D K+ +D  IS  L   WS  RL M   ++LR G+ E+   +  P  V ++E + 
Sbjct: 66  VNGVNDHKEELDRTISEHLKTGWSLERLTMTDKTLLRLGLFEIKYFNETPDRVALNEIIE 125

Query: 133 IAHDFFYGDEPKFINAVLDKVSRK 156
           +A  +      KFIN +L +   +
Sbjct: 126 VAKKYSDETSAKFINGLLSQFVSE 149


>gi|258405547|ref|YP_003198289.1| NusB antitermination factor [Desulfohalobium retbaense DSM 5692]
 gi|257797774|gb|ACV68711.1| NusB antitermination factor [Desulfohalobium retbaense DSM 5692]
          Length = 147

 Score =  146 bits (370), Expect = 8e-34,   Method: Composition-based stats.
 Identities = 36/140 (25%), Positives = 61/140 (43%), Gaps = 6/140 (4%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           R + R  A Q LY ++        +     T+    + E   E      D  W   ++ G
Sbjct: 9   RRLGRQTAFQVLYSLNFQESHGNGLALLQRTFTHLIEQE---EVGEAAADFAW--ELVQG 63

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
           V + +  +D LIS   ++ W   R+  I  SILR  + E+     +P +V I+E V +A 
Sbjct: 64  VWENRDELDELISRH-SQHWRVGRIAKIELSILRLALYEMYFRSDIPPKVAINEGVELAK 122

Query: 136 DFFYGDEPKFINAVLDKVSR 155
           +F       F+N +LD  ++
Sbjct: 123 EFGDEQSRGFVNGILDAAAK 142


>gi|74318210|ref|YP_315950.1| NusB antitermination factor [Thiobacillus denitrificans ATCC 25259]
 gi|119390844|sp|Q3SGU8|NUSB_THIDA RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|74057705|gb|AAZ98145.1| NusB antitermination factor [Thiobacillus denitrificans ATCC 25259]
          Length = 145

 Score =  146 bits (370), Expect = 9e-34,   Method: Composition-based stats.
 Identities = 42/148 (28%), Positives = 67/148 (45%), Gaps = 13/148 (8%)

Query: 12  LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71
           ++  R +AR   +Q +Y   I G   T I +            L  +  +   D  +FR 
Sbjct: 1   MAGSRKVAREFTLQGIYAWMIGGADVTLIAA-----------NLKEDEQFKRADEAYFRT 49

Query: 72  IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
           +++GV+  +  +   I+  L    + + L  I  SIL  G  EL+ C  VP  V I+E V
Sbjct: 50  LLYGVLKEEDMLSSRIAPLLDR--AVAELSPIERSILLIGAYELLHCPDVPWRVAINESV 107

Query: 132 CIAHDFFYGDEPKFINAVLDKVSRKEEI 159
            +A  F   D  K+IN VLDK+++    
Sbjct: 108 ELAKKFGGTDGHKYINGVLDKLAQDVRA 135


>gi|42527164|ref|NP_972262.1| transcription antitermination protein NusB [Treponema denticola
           ATCC 35405]
 gi|81570229|sp|Q73M53|NUSB_TREDE RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|41817588|gb|AAS12173.1| N utilization substance protein B [Treponema denticola ATCC 35405]
          Length = 136

 Score =  146 bits (370), Expect = 9e-34,   Method: Composition-based stats.
 Identities = 40/145 (27%), Positives = 68/145 (46%), Gaps = 10/145 (6%)

Query: 12  LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71
           +S  R   R+ A QAL   D+ G     ++ +   + +  +  +   + YL     + ++
Sbjct: 1   MSVGRRRGRILAFQALVAWDVGGA----VLDDLLNFSWQNEDSIKDPNGYL-----FPKM 51

Query: 72  IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
           ++ G ++    ID +I   L   W   RL+ +  +ILR  V  LI     P  ++I E +
Sbjct: 52  MVLGTIENITEIDKVIQENLD-NWVIDRLNSVDKAILRLSVYSLIYQKDTPPPIVIDEAI 110

Query: 132 CIAHDFFYGDEPKFINAVLDKVSRK 156
            +A DF   D  KF+NAVLD +  K
Sbjct: 111 NLAKDFGTDDSYKFVNAVLDSIKNK 135


>gi|28378299|ref|NP_785191.1| transcription antitermination protein NusB [Lactobacillus plantarum
           WCFS1]
 gi|32171607|sp|Q88WM9|NUSB_LACPL RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|28271134|emb|CAD64039.1| transcription termination factor NusB [Lactobacillus plantarum
           WCFS1]
          Length = 139

 Score =  146 bits (370), Expect = 9e-34,   Method: Composition-based stats.
 Identities = 35/146 (23%), Positives = 60/146 (41%), Gaps = 9/146 (6%)

Query: 12  LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71
           +S  R   R  A QAL+ ++    +    + +           L+ E         +   
Sbjct: 1   MSLTRHEIREKAFQALFALNANPDADENQLFQQL---------LNPEETDAVEIPAYLST 51

Query: 72  IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
           ++ GV + +  +D  I   L++KWS  RL      ILR    EL     VP +V ++E +
Sbjct: 52  LVTGVREHQVELDAQIQPYLSQKWSLDRLAKTDLIILRIAFFELQFVDDVPTKVAVNEAI 111

Query: 132 CIAHDFFYGDEPKFINAVLDKVSRKE 157
            +   F      KF++ VL KV + +
Sbjct: 112 ELTKAFSDDRSRKFVSGVLGKVVKNQ 137


>gi|224370206|ref|YP_002604370.1| NusB [Desulfobacterium autotrophicum HRM2]
 gi|259514822|sp|C0QKW6|NUSB_DESAH RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|223692923|gb|ACN16206.1| NusB [Desulfobacterium autotrophicum HRM2]
          Length = 143

 Score =  146 bits (369), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 39/147 (26%), Positives = 68/147 (46%), Gaps = 10/147 (6%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           R  AR  A+QALY  D+   S  E+++ + +         + E         +F  ++ G
Sbjct: 4   RRQARELALQALYYFDVDKGSPDELLALFCS---------NFEDRIDESIRPFFLDLVKG 54

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
           V   +  +D L++   +  W  SR+ ++  +I+R  + E+++   +P  V I+E V I  
Sbjct: 55  VTQARAEVDDLMNRS-SSNWKVSRMPIVDRNIMRMAIFEMLKQPDIPPTVSINEAVEIGK 113

Query: 136 DFFYGDEPKFINAVLDKVSRKEEIKRS 162
            F       FIN VLDK+   + I R 
Sbjct: 114 RFGTRGSGAFINGVLDKIRVLKNIDRG 140


>gi|153208973|ref|ZP_01947179.1| transcription antitermination factor NusB [Coxiella burnetii 'MSU
           Goat Q177']
 gi|165924151|ref|ZP_02219983.1| transcription antitermination factor NusB [Coxiella burnetii RSA
           334]
 gi|212219014|ref|YP_002305801.1| transcription antitermination protein NusB [Coxiella burnetii
           CbuK_Q154]
 gi|238055349|sp|B6J8Q7|NUSB_COXB1 RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|120575573|gb|EAX32197.1| transcription antitermination factor NusB [Coxiella burnetii 'MSU
           Goat Q177']
 gi|165916410|gb|EDR35014.1| transcription antitermination factor NusB [Coxiella burnetii RSA
           334]
 gi|212013276|gb|ACJ20656.1| utilization substance protein B [Coxiella burnetii CbuK_Q154]
          Length = 138

 Score =  146 bits (369), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 40/141 (28%), Positives = 69/141 (48%), Gaps = 13/141 (9%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           R  AR  A+QALYQ          +IS++      +DTE           + +F+ ++ G
Sbjct: 6   RHNARRYALQALYQWFFCETKPDALISQFMEEHDLSDTE-----------VAYFKEVVTG 54

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
            +     ID L+++ L  K   S L+ +  S+LR  + EL+    VP +V+I E + +  
Sbjct: 55  TIQHVAIIDELMTAHLDRK--ISALNPVELSVLRLSIYELLHRKEVPYKVVIDEALELVK 112

Query: 136 DFFYGDEPKFINAVLDKVSRK 156
           +F      K++NA+LD +S +
Sbjct: 113 EFGAEAGHKYVNAILDVLSSE 133


>gi|54025601|ref|YP_119843.1| transcription antitermination protein NusB [Nocardia farcinica IFM
           10152]
 gi|81602600|sp|Q5YTL2|NUSB_NOCFA RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|54017109|dbj|BAD58479.1| putative transcription termination factor [Nocardia farcinica IFM
           10152]
          Length = 169

 Score =  146 bits (369), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 42/150 (28%), Positives = 65/150 (43%), Gaps = 9/150 (6%)

Query: 5   DNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHV 64
           D K   K    R  AR  AV  L++ +       ++++E          +L      +  
Sbjct: 7   DKKSTFKKLGARHKARRRAVDLLFEAEARDVDAADLLTER--------ADLATRDQSVAP 58

Query: 65  DLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVE 124
              + R ++ GV D  + +D  I S L + W+ SRL  +  +ILR  V EL     VP  
Sbjct: 59  LHAYTRTLVEGVADELERVDGTIESYL-QDWTLSRLPAVDRAILRVAVWELFHATDVPPV 117

Query: 125 VIISEYVCIAHDFFYGDEPKFINAVLDKVS 154
           V + E V +A +    D P F+N VL +V 
Sbjct: 118 VAVDEAVELAKELSTDDSPSFVNGVLGQVV 147


>gi|288553331|ref|YP_003425266.1| transcription antitermination protein NusB [Bacillus pseudofirmus
           OF4]
 gi|288544491|gb|ADC48374.1| transcription antitermination protein NusB [Bacillus pseudofirmus
           OF4]
          Length = 135

 Score =  146 bits (369), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 41/138 (29%), Positives = 64/138 (46%), Gaps = 15/138 (10%)

Query: 15  RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74
            R +ARL A QALYQ+D+ G      I                         E+F  ++ 
Sbjct: 2   NRRLARLRAAQALYQMDLTGSEMESAIESVLEDN--------------EKQSEFFTQLVQ 47

Query: 75  GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134
           G  + K  ID  IS+ L E W+ SR+  +  +I+R  + E++E   +PV V  +E + +A
Sbjct: 48  GTTELKTKIDETISANL-EGWTISRMGHVDRAIIRMAMYEMLEVEDIPVNVTFNEAIELA 106

Query: 135 HDFFYGDEPKFINAVLDK 152
             F   +  +F+N VL K
Sbjct: 107 KAFGGEEAGRFVNGVLSK 124


>gi|331269441|ref|YP_004395933.1| transcription antitermination factor NusB [Clostridium botulinum
           BKT015925]
 gi|329125991|gb|AEB75936.1| transcription antitermination factor NusB [Clostridium botulinum
           BKT015925]
          Length = 135

 Score =  146 bits (369), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 39/141 (27%), Positives = 67/141 (47%), Gaps = 10/141 (7%)

Query: 15  RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74
            R  +R  A++ L+++ I      EII  ++          + ++    VD E+   II 
Sbjct: 2   NRRKSREIAMKLLFEMSINKEELKEIIHNFKE---------NTDTNLKDVDFEYINKIIQ 52

Query: 75  GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134
           GV D  + ID  I   LT+ W  +RL  +  +ILR    E++    VP +V ++E + +A
Sbjct: 53  GVQDNIEDIDSKIEENLTK-WKLNRLSKMDLTILRISTYEIMFMEDVPEKVAVNEGIELA 111

Query: 135 HDFFYGDEPKFINAVLDKVSR 155
             +   + P FIN VL  + +
Sbjct: 112 KKYSAENSPAFINGVLGNMIK 132


>gi|303239904|ref|ZP_07326427.1| NusB antitermination factor [Acetivibrio cellulolyticus CD2]
 gi|302592614|gb|EFL62339.1| NusB antitermination factor [Acetivibrio cellulolyticus CD2]
          Length = 141

 Score =  146 bits (369), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 36/140 (25%), Positives = 63/140 (45%), Gaps = 12/140 (8%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           R  AR  A++ +YQ++I   S  E I +              +      D  +   ++ G
Sbjct: 3   RRAAREIAMKLVYQLEIQKDSREEQIRQTLE-----------QENVTENDTNYITDVVEG 51

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
           V    + ID  I    ++ W  SR+  +  SILR  + E+   + +P  V ++E V +A 
Sbjct: 52  VFKNLEQIDKTIEMY-SKGWKLSRISKVDLSILRLSIYEISFRNDIPFNVSVNEAVELAK 110

Query: 136 DFFYGDEPKFINAVLDKVSR 155
           ++   +   FIN +L KVS+
Sbjct: 111 NYSGEESSSFINGILGKVSK 130


>gi|320011921|gb|ADW06771.1| NusB antitermination factor [Streptomyces flavogriseus ATCC 33331]
          Length = 143

 Score =  146 bits (369), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 42/147 (28%), Positives = 67/147 (45%), Gaps = 12/147 (8%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           R  AR  A Q L++ D  G S   +++++       D +  V         E+   ++ G
Sbjct: 4   RNKARKRAFQILFEADQRGESVQTVLADWVRLSRTDDRQPPVG--------EFTMELVEG 55

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
                  ID LI +     W   R+ ++  SILR G  EL+   S P  V+I E V +A 
Sbjct: 56  YAQYADRIDDLIVTYAV-DWEIDRMPVVDRSILRLGAYELVWMDSTPDAVVIDEAVQLAK 114

Query: 136 DFFYGDEPKFINAVLDKVSRKEEIKRS 162
           +F   D P F+N +L   +R +++K S
Sbjct: 115 EFSTDDSPAFVNGLL---ARFKDLKPS 138


>gi|319651493|ref|ZP_08005621.1| transcription antitermination protein NusB [Bacillus sp.
           2_A_57_CT2]
 gi|317396808|gb|EFV77518.1| transcription antitermination protein NusB [Bacillus sp.
           2_A_57_CT2]
          Length = 129

 Score =  146 bits (369), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 44/143 (30%), Positives = 62/143 (43%), Gaps = 17/143 (11%)

Query: 15  RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74
           +R  AR  A+QAL+QID+        I                         E+   ++ 
Sbjct: 2   KRRTAREKALQALFQIDVSQAEPETAIEHVLE---------------GEKSDEYLNKLVS 46

Query: 75  GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIE-CHSVPVEVIISEYVCI 133
           GV+  K+ ID  I   L EKW+  RL  +  ++LR  V EL+     VP  V++ E + I
Sbjct: 47  GVLQHKETIDGEIKGFL-EKWTLERLATVDRNLLRLSVYELLYLAEEVPANVVLDEAIEI 105

Query: 134 AHDFFYGDEPKFINAVLDKVSRK 156
           A  +      KFIN VL KV  K
Sbjct: 106 AKLYGDDQSSKFINGVLSKVKEK 128


>gi|296170770|ref|ZP_06852342.1| N utilization substance protein B [Mycobacterium parascrofulaceum
           ATCC BAA-614]
 gi|295894585|gb|EFG74322.1| N utilization substance protein B [Mycobacterium parascrofulaceum
           ATCC BAA-614]
          Length = 168

 Score =  146 bits (369), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 41/146 (28%), Positives = 63/146 (43%), Gaps = 9/146 (6%)

Query: 8   KDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLE 67
           +  +    R  AR  AV  L++ +  G    E++    T        L   +  +     
Sbjct: 3   RPARPVKGRHQARKRAVDLLFEAEARGLGPAEVVDVRAT--------LAAANPDVAPLQP 54

Query: 68  WFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVII 127
           +      GV +   HID LISS L + W+  RL  +  +ILR  V EL+    VP  V +
Sbjct: 55  YTVAAARGVGEHAAHIDDLISSHL-QGWTLDRLPAVDRAILRVAVWELLYADDVPEPVAV 113

Query: 128 SEYVCIAHDFFYGDEPKFINAVLDKV 153
            E V +A +    + P F+N VL +V
Sbjct: 114 DEAVQLAKELSTDESPAFVNGVLGQV 139


>gi|166710625|ref|ZP_02241832.1| transcription antitermination protein NusB [Xanthomonas oryzae pv.
           oryzicola BLS256]
          Length = 156

 Score =  146 bits (369), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 33/140 (23%), Positives = 60/140 (42%), Gaps = 13/140 (9%)

Query: 25  QALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHID 84
           QA+Y   I G    ++I+++             E  +   DL +F  ++ GV+  +  +D
Sbjct: 30  QAVYAWQISGGFAKQVIAQFAH-----------EQAHEVADLAYFENLVEGVLTNRAELD 78

Query: 85  LLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPK 144
             ++  L        +D I  ++LR    EL+    VP  V+I+E +  A  F       
Sbjct: 79  TALTPYLDRG--VEEVDAIERAVLRLAAYELLYRQDVPYRVLINEAIETAKRFGSEHGHT 136

Query: 145 FINAVLDKVSRKEEIKRSGC 164
           ++N VLD+ + +     SG 
Sbjct: 137 YVNGVLDRAAVELRKVESGA 156


>gi|288906084|ref|YP_003431306.1| antitermination protein NusB [Streptococcus gallolyticus UCN34]
 gi|306832123|ref|ZP_07465277.1| transcription antitermination factor NusB [Streptococcus
           gallolyticus subsp. gallolyticus TX20005]
 gi|325979049|ref|YP_004288765.1| transcription antitermination factor NusB [Streptococcus
           gallolyticus subsp. gallolyticus ATCC BAA-2069]
 gi|288732810|emb|CBI14386.1| putative antitermination protein NusB [Streptococcus gallolyticus
           UCN34]
 gi|304425562|gb|EFM28680.1| transcription antitermination factor NusB [Streptococcus
           gallolyticus subsp. gallolyticus TX20005]
 gi|325178977|emb|CBZ49021.1| transcription antitermination factor NusB [Streptococcus
           gallolyticus subsp. gallolyticus ATCC BAA-2069]
          Length = 142

 Score =  146 bits (369), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 33/144 (22%), Positives = 58/144 (40%), Gaps = 7/144 (4%)

Query: 11  KLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFR 70
             ++ R   R  A QAL+ ++  G             +F    +  +E         +  
Sbjct: 4   NFTNSRRDLRERAFQALFSLEFGGEYLAAA-------QFAYTYDKTIEEDDTIDVPVFLL 56

Query: 71  VIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEY 130
            ++ GV D +  ID  I + L   WS  RL +   ++LR G+ E+      P  V ++E 
Sbjct: 57  NLVKGVQDFQSEIDQQIETHLKSGWSLERLTLTDRTLLRLGLYEIKYFEETPGRVAVNEI 116

Query: 131 VCIAHDFFYGDEPKFINAVLDKVS 154
           + IA  +      KF+N +L +  
Sbjct: 117 IEIAKKYSDDTSAKFVNGLLSQFV 140


>gi|300767235|ref|ZP_07077147.1| transcription antitermination factor NusB [Lactobacillus plantarum
           subsp. plantarum ATCC 14917]
 gi|300495054|gb|EFK30210.1| transcription antitermination factor NusB [Lactobacillus plantarum
           subsp. plantarum ATCC 14917]
          Length = 139

 Score =  146 bits (368), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 35/146 (23%), Positives = 61/146 (41%), Gaps = 9/146 (6%)

Query: 12  LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71
           +S  R   R  A QAL+ ++    +    + +           L+ E         +   
Sbjct: 1   MSLTRHEIREKAFQALFALNANPDADENQLFQQL---------LNPEEADAVEIPAYLST 51

Query: 72  IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
           ++ GV + +  +D  I   L++KWS +RL      ILR    EL     VP +V ++E +
Sbjct: 52  LVTGVREHQAELDAQIQPYLSQKWSLNRLAKTDLIILRIAFFELQFVDDVPAKVAVNEAI 111

Query: 132 CIAHDFFYGDEPKFINAVLDKVSRKE 157
            +   F      KF++ VL KV + +
Sbjct: 112 ELTKAFSDDRSRKFVSGVLGKVVKNQ 137


>gi|258592181|emb|CBE68490.1| N utilization substance protein B homolog (Protein nusB) [NC10
           bacterium 'Dutch sediment']
          Length = 143

 Score =  146 bits (368), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 38/140 (27%), Positives = 63/140 (45%), Gaps = 11/140 (7%)

Query: 15  RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74
           +R  AR  A+  LYQ++       E+    ++  F AD     E             ++ 
Sbjct: 3   KRHRARELALSLLYQLEFYPLEAFEV----QSAAFWADHPAGPEI------RSLTDELVQ 52

Query: 75  GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134
           G +  ++ ID +++S   E W  SRL ++   +LR    EL+     P +V I E + +A
Sbjct: 53  GTLQHQKPIDEVLASH-VEHWILSRLALVDLCVLRLAAFELLFYGKTPWKVAIDEAIELA 111

Query: 135 HDFFYGDEPKFINAVLDKVS 154
             F   D   F+N VLDK++
Sbjct: 112 KAFGGKDSGAFVNGVLDKLA 131


>gi|182439837|ref|YP_001827556.1| transcription antitermination protein NusB [Streptomyces griseus
           subsp. griseus NBRC 13350]
 gi|326780501|ref|ZP_08239766.1| NusB antitermination factor [Streptomyces cf. griseus XylebKG-1]
 gi|238689031|sp|B1W456|NUSB_STRGG RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|178468353|dbj|BAG22873.1| putative NusB-family protein [Streptomyces griseus subsp. griseus
           NBRC 13350]
 gi|326660834|gb|EGE45680.1| NusB antitermination factor [Streptomyces cf. griseus XylebKG-1]
          Length = 143

 Score =  146 bits (368), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 41/147 (27%), Positives = 66/147 (44%), Gaps = 12/147 (8%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           R  AR  A Q L++ D  G S   +++++       D +  V         E+   ++ G
Sbjct: 4   RNKARKRAFQILFEADQRGESVQSVLADWVRLSRTDDRQPPVG--------EFTMELVEG 55

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
                  ID LI +     W   R+ ++  SILR G  ELI     P  V+I E V +A 
Sbjct: 56  YAQYADRIDDLIVTYAV-DWEIDRMPVVDRSILRLGAYELIWMDGTPDAVVIDEAVQLAK 114

Query: 136 DFFYGDEPKFINAVLDKVSRKEEIKRS 162
           +F   D P F+N +L   +R +++K +
Sbjct: 115 EFSTDDSPSFVNGLL---ARFKDLKPN 138


>gi|120610904|ref|YP_970582.1| NusB antitermination factor [Acidovorax citrulli AAC00-1]
 gi|120589368|gb|ABM32808.1| NusB antitermination factor [Acidovorax citrulli AAC00-1]
          Length = 186

 Score =  146 bits (368), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 40/153 (26%), Positives = 67/153 (43%), Gaps = 14/153 (9%)

Query: 2   TIQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVY 61
           T    +K    S  R  +R  A+QALYQ  I+G +    I  +              S +
Sbjct: 26  TSTGARKAASKSA-RSRSRAFALQALYQ-HIVGRNEATAIDVF----------TRDLSGF 73

Query: 62  LHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSV 121
              D   +  ++HG ++    +D LI+  L    +   +  I  + +  GV E   C  V
Sbjct: 74  HKADAAHYDALLHGCIENAGALDALIAPKLDR--TLEEISPIEHATMWIGVYEFQNCLDV 131

Query: 122 PVEVIISEYVCIAHDFFYGDEPKFINAVLDKVS 154
           P  V+I+E V +A +F   D  K++N VL+ ++
Sbjct: 132 PWRVVINECVELAKEFGGTDGHKYVNGVLNGLA 164


>gi|323127989|gb|ADX25286.1| transcription antitermination protein NusB [Streptococcus
           dysgalactiae subsp. equisimilis ATCC 12394]
          Length = 149

 Score =  146 bits (368), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 36/144 (25%), Positives = 66/144 (45%), Gaps = 8/144 (5%)

Query: 14  HRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLE-WFRVI 72
           + R   R  A QAL+ +++ G             +F  D +  V+     ++L  +   +
Sbjct: 7   NSRRDLRERAFQALFSMEMGGDFL-------VASQFAYDYDKVVDEGNEALELPIFLLNL 59

Query: 73  IHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVC 132
           ++GV D K+ +D  IS  L   WS  RL +   ++LR G+ E+   +  P  V ++E + 
Sbjct: 60  VNGVNDHKKELDRTISEHLKTGWSLERLTVTDKTLLRLGLFEIKYFNETPDRVALNEIIE 119

Query: 133 IAHDFFYGDEPKFINAVLDKVSRK 156
           +A  +      KFIN +L +   +
Sbjct: 120 VAKKYSDETSAKFINGLLSQFVSE 143


>gi|325981170|ref|YP_004293572.1| NusB antitermination factor [Nitrosomonas sp. AL212]
 gi|325530689|gb|ADZ25410.1| NusB antitermination factor [Nitrosomonas sp. AL212]
          Length = 166

 Score =  146 bits (368), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 41/149 (27%), Positives = 67/149 (44%), Gaps = 13/149 (8%)

Query: 6   NKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVD 65
            KK  K   RR IAR   +Q +YQ    G +T  I           + +L     + HVD
Sbjct: 13  EKKAEKYKSRRRIAREFVLQGIYQWRTAGGTTNFI-----------EQQLRESEEFRHVD 61

Query: 66  LEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEV 125
            + F  ++ G + +   ++ +I  CL    S   L  +  +IL     ELI    +P   
Sbjct: 62  EKHFTHVLQGALQQVDELEKIIRPCLDR--SLDELSPVEFAILLLSTFELIHHPEIPYRA 119

Query: 126 IISEYVCIAHDFFYGDEPKFINAVLDKVS 154
           I++E + +A  +   D  K++N VLDK++
Sbjct: 120 ILNEAIELARTYGGSDGHKYVNGVLDKLA 148


>gi|70726392|ref|YP_253306.1| transcription antitermination protein NusB [Staphylococcus
           haemolyticus JCSC1435]
 gi|119390830|sp|Q4L6M5|NUSB_STAHJ RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|68447116|dbj|BAE04700.1| unnamed protein product [Staphylococcus haemolyticus JCSC1435]
          Length = 128

 Score =  146 bits (368), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 40/138 (28%), Positives = 62/138 (44%), Gaps = 13/138 (9%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           R  +R+ A Q L+Q+++        ++  E   F  D E         +D ++   ++ G
Sbjct: 3   RKESRMQAFQTLFQLEMKDTE----LTINEAINFIKDDE-------PELDFDFIHWLVTG 51

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
           V D +  +D  I   L + WS  RL      ILR    EL+     P +VII+E V +A 
Sbjct: 52  VKDHEPVLDDTIKPHL-KDWSLQRLLKTDRIILRMATFELLHS-DTPPKVIINEAVELAK 109

Query: 136 DFFYGDEPKFINAVLDKV 153
            F   +  KFIN VL  +
Sbjct: 110 QFSDDEHYKFINGVLSNI 127


>gi|282866212|ref|ZP_06275259.1| NusB antitermination factor [Streptomyces sp. ACTE]
 gi|282558996|gb|EFB64551.1| NusB antitermination factor [Streptomyces sp. ACTE]
          Length = 143

 Score =  146 bits (368), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 42/147 (28%), Positives = 67/147 (45%), Gaps = 12/147 (8%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           R  AR  A Q L++ D  G S   +++++       D +  V         E+   ++ G
Sbjct: 4   RNKARKRAFQILFEADQRGESVQTVLADWVRLSRTDDRQPPVG--------EFTMELVEG 55

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
                  ID LI +     W   R+ ++  SILR G  ELI   S P  V+I E V +A 
Sbjct: 56  YAQYADRIDDLIVTYAV-DWEIDRMPVVDRSILRLGAYELIWMDSTPDAVVIDEAVQLAK 114

Query: 136 DFFYGDEPKFINAVLDKVSRKEEIKRS 162
           +F   D P F+N +L   +R +++K +
Sbjct: 115 EFSTDDSPSFVNGLL---ARFKDLKAN 138


>gi|226311922|ref|YP_002771816.1| N utilization substance protein B [Brevibacillus brevis NBRC
           100599]
 gi|226094870|dbj|BAH43312.1| N utilization substance protein B [Brevibacillus brevis NBRC
           100599]
          Length = 137

 Score =  146 bits (368), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 34/148 (22%), Positives = 63/148 (42%), Gaps = 15/148 (10%)

Query: 15  RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74
           +R  AR   VQ L+QID+     T+ ++              +       + ++ R ++ 
Sbjct: 5   KRRTAREKVVQCLFQIDMAEVPLTDAVA--------------LVMEESEENAQYLRYLLD 50

Query: 75  GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134
           GV+     ID  I   L   W   R+  +  +ILR    E++     P +V+++E + +A
Sbjct: 51  GVLKNLTEIDAEIKKYL-RGWQLERIANVDRAILRLAFYEIMFEQDTPDKVVMNEAIEVA 109

Query: 135 HDFFYGDEPKFINAVLDKVSRKEEIKRS 162
             F      ++IN VL    +  E K++
Sbjct: 110 KLFSDEQSHRYINGVLSSFLQSRETKQA 137


>gi|118443864|ref|YP_878051.1| transcription antitermination protein NusB [Clostridium novyi NT]
 gi|166215685|sp|A0Q099|NUSB_CLONN RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|118134320|gb|ABK61364.1| transcription antitermination factor NusB [Clostridium novyi NT]
          Length = 133

 Score =  146 bits (368), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 34/141 (24%), Positives = 69/141 (48%), Gaps = 10/141 (7%)

Query: 15  RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74
            R  +R  A++ L+++ I     +EI+  ++          + ++   +VD  +   I++
Sbjct: 2   NRRKSREVAMKLLFEMSINKEEFSEILKNFKE---------NTDTNMENVDFIYINKIVN 52

Query: 75  GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134
           G+   K+ ID  I   LT+ W  +RL  I  +ILR    E++    +P +V ++E + +A
Sbjct: 53  GIEQNKEDIDKKIEENLTK-WKLNRLSKIDLTILRISTYEIMFMEDIPNKVAVNEAIELA 111

Query: 135 HDFFYGDEPKFINAVLDKVSR 155
             +   + P F+N VL  + +
Sbjct: 112 KKYSADNSPAFVNGVLGNMIK 132


>gi|78357481|ref|YP_388930.1| transcription antitermination factor NusB [Desulfovibrio
           desulfuricans subsp. desulfuricans str. G20]
 gi|119390767|sp|Q30YL1|NUSB_DESDG RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|78219886|gb|ABB39235.1| transcription antitermination factor NusB [Desulfovibrio
           desulfuricans subsp. desulfuricans str. G20]
          Length = 154

 Score =  146 bits (368), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 34/147 (23%), Positives = 63/147 (42%), Gaps = 6/147 (4%)

Query: 13  SHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVI 72
           +  R  +R  A Q LY ++    S  + +++ +     +    D       V   W   +
Sbjct: 7   NSSRRSSRALAFQVLYGLNF---SPAKDLAQLQEAYCASPDVSDRGGEAHPVGFAW--EL 61

Query: 73  IHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVC 132
           I G    ++ +D +I+    + W   R+  I  +ILR  V E++    VP +V I+E + 
Sbjct: 62  IEGTWTNQKALDEIITRF-AQNWRVERIGKIELTILRLAVYEMLYRADVPPKVAINEGIE 120

Query: 133 IAHDFFYGDEPKFINAVLDKVSRKEEI 159
           ++  F       FIN +LD  ++  E 
Sbjct: 121 LSKQFGDDKSRNFINGILDAAAKALEA 147


>gi|94986598|ref|YP_594531.1| transcription termination factor [Lawsonia intracellularis
           PHE/MN1-00]
 gi|119390780|sp|Q1MS16|NUSB_LAWIP RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|94730847|emb|CAJ54209.1| transcription termination factor [Lawsonia intracellularis
           PHE/MN1-00]
          Length = 161

 Score =  146 bits (368), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 38/154 (24%), Positives = 64/154 (41%), Gaps = 2/154 (1%)

Query: 9   DLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISE-YETYRFCADTELDVESVYLHVDLE 67
                H R I R  A Q LY +     +T E + E +       +         L   + 
Sbjct: 2   PANKKHSRRIDRTKAFQVLYSLHFTQINTIETLKEIFLNLPNPLEERNTGIITELDTQIS 61

Query: 68  WFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVII 127
           +   ++ GV      +D +IS   ++ W   RL  I  ++LR    E+  C  VP +V +
Sbjct: 62  FSWQLVEGVWRNVTRLDKIISQF-SQNWRVDRLGKIELTLLRIATFEMYYCPDVPPKVSL 120

Query: 128 SEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKR 161
           +E + +A  F      KFIN +LD + +  E ++
Sbjct: 121 NEALELATCFGDEKARKFINGILDAIIKAIETEK 154


>gi|262376860|ref|ZP_06070087.1| transcription antitermination factor NusB [Acinetobacter lwoffii
           SH145]
 gi|262308205|gb|EEY89341.1| transcription antitermination factor NusB [Acinetobacter lwoffii
           SH145]
          Length = 149

 Score =  146 bits (368), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 38/139 (27%), Positives = 64/139 (46%), Gaps = 13/139 (9%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           +  AR  AVQ +Y+  +      EI +              VE+    VDL ++  ++  
Sbjct: 12  KRKARRFAVQGIYEWQMSHNPVHEIEA-----------RTRVENAMHKVDLSYYHELLTQ 60

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
           V+   + +D L+   L  +   S LD +  + LR G  EL E   +P  V++ E + +A 
Sbjct: 61  VVANHEALDALLIPVLDRE--LSALDGVELATLRLGAYELKEHLEIPYRVVLDEAIELAK 118

Query: 136 DFFYGDEPKFINAVLDKVS 154
            F   D  K+IN VLD+++
Sbjct: 119 HFGGADSHKYINGVLDRLA 137


>gi|257055582|ref|YP_003133414.1| transcription antitermination factor NusB [Saccharomonospora
           viridis DSM 43017]
 gi|256585454|gb|ACU96587.1| transcription antitermination factor NusB [Saccharomonospora
           viridis DSM 43017]
          Length = 153

 Score =  146 bits (368), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 36/148 (24%), Positives = 67/148 (45%), Gaps = 13/148 (8%)

Query: 6   NKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVD 65
           ++   + +  R  +R  AV+ LY+  +       ++SE               S  +   
Sbjct: 8   SRTARRGTFSRRASRQRAVELLYEAALRKTDPATLMSERL------------GSPDVDPI 55

Query: 66  LEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEV 125
            ++   ++ GV + ++ ID L++    + WS  R+  +  ++LR G+ EL+    VP  V
Sbjct: 56  SDYTITLVEGVSENRERIDELLAEY-AQGWSLERMPPVDLAVLRVGLYELLWLDDVPDPV 114

Query: 126 IISEYVCIAHDFFYGDEPKFINAVLDKV 153
            I E V IA      D P+F+N VL ++
Sbjct: 115 AIDEAVGIAKQLSTDDSPRFVNGVLGRI 142


>gi|168186196|ref|ZP_02620831.1| transcription antitermination factor NusB [Clostridium botulinum C
           str. Eklund]
 gi|169295703|gb|EDS77836.1| transcription antitermination factor NusB [Clostridium botulinum C
           str. Eklund]
          Length = 133

 Score =  146 bits (368), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 35/141 (24%), Positives = 69/141 (48%), Gaps = 10/141 (7%)

Query: 15  RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74
            R  +R  A++ L+++ I     +EI+  ++          + ++   +VD  +   I++
Sbjct: 2   NRRKSREVAMKLLFEMSINKEEFSEILKNFKE---------NTDTNMENVDFVYINKIVN 52

Query: 75  GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134
           G+   K+ ID  I   LT+ W  +RL  I  +ILR    E++    +P +V ++E + +A
Sbjct: 53  GIEQNKEDIDKRIEENLTK-WKLNRLSKIDLTILRISTYEIMFMEDIPNKVAVNEAIELA 111

Query: 135 HDFFYGDEPKFINAVLDKVSR 155
             +   + P F+N VL  + R
Sbjct: 112 KKYSADNSPAFVNGVLGNMIR 132


>gi|187251633|ref|YP_001876115.1| NusB antitermination factor [Elusimicrobium minutum Pei191]
 gi|254772640|sp|B2KE32|NUSB_ELUMP RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|186971793|gb|ACC98778.1| NusB anti-termination factor [Elusimicrobium minutum Pei191]
          Length = 140

 Score =  146 bits (368), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 36/149 (24%), Positives = 69/149 (46%), Gaps = 12/149 (8%)

Query: 15  RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74
            R +AR  A+Q LY  D       +I           + + D +        E+   II 
Sbjct: 3   NRRLAREHALQTLYYADTGKTQGKDI----------NEYKEDFKDSLDAAGFEFCSGIID 52

Query: 75  GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHS-VPVEVIISEYVCI 133
           G ++ +  +D +IS+   + WS +R+ ++  SILR    E++      PV  +I E + +
Sbjct: 53  GALEHQAELDKIISAY-AKNWSLNRMSVVDRSILRMAAYEMLFSPENTPVAAVIDEAIEL 111

Query: 134 AHDFFYGDEPKFINAVLDKVSRKEEIKRS 162
           A  F   +  +FIN +LD++ ++ +  ++
Sbjct: 112 AKKFSTENSSRFINGLLDQIKKERKNGQN 140


>gi|254434713|ref|ZP_05048221.1| transcription antitermination factor NusB [Nitrosococcus oceani
           AFC27]
 gi|207091046|gb|EDZ68317.1| transcription antitermination factor NusB [Nitrosococcus oceani
           AFC27]
          Length = 136

 Score =  145 bits (367), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 33/136 (24%), Positives = 64/136 (47%), Gaps = 14/136 (10%)

Query: 24  VQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHI 83
           +Q LYQ  ++G    +I  E+            +      +D  +F+ ++ GV  R+  +
Sbjct: 1   MQGLYQWQLMGQDVDKIDIEF------------IVQDIRGIDHAYFQELLRGVPQRQGEL 48

Query: 84  DLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEP 143
           D  +   L      + +D + C+ILR G  EL+    +P  V+++E + +A  F      
Sbjct: 49  DECLGPFLDR--PINEVDPVECAILRIGAFELLCRPEIPYRVVLNEAIELAKRFGAEHGH 106

Query: 144 KFINAVLDKVSRKEEI 159
           +++N +LDKV++K   
Sbjct: 107 RYVNGILDKVAQKVRA 122


>gi|229916254|ref|YP_002884900.1| NusB antitermination factor [Exiguobacterium sp. AT1b]
 gi|259514838|sp|C4L3F7|NUSB_EXISA RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|229467683|gb|ACQ69455.1| NusB antitermination factor [Exiguobacterium sp. AT1b]
          Length = 128

 Score =  145 bits (367), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 37/143 (25%), Positives = 64/143 (44%), Gaps = 16/143 (11%)

Query: 15  RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74
           +R  AR  A+Q L+QI++      E I       F  D E             ++  ++ 
Sbjct: 2   KRHEAREKAIQTLFQIEVSKLEVDEAIE------FALDGEESD---------PFYEQLVT 46

Query: 75  GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134
           G ++  + ID L+   L + W   RL  +  +ILR    EL+   ++P  V I+E V +A
Sbjct: 47  GTLEHIEDIDALLVENL-KNWRLDRLGNVERTILRMATFELLYVETIPENVTINEAVELA 105

Query: 135 HDFFYGDEPKFINAVLDKVSRKE 157
             F   +  K +N VL  + +++
Sbjct: 106 KSFGDEEAGKLVNGVLGNIIKED 128


>gi|323705298|ref|ZP_08116873.1| NusB antitermination factor [Thermoanaerobacterium xylanolyticum
           LX-11]
 gi|323535200|gb|EGB24976.1| NusB antitermination factor [Thermoanaerobacterium xylanolyticum
           LX-11]
          Length = 139

 Score =  145 bits (367), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 36/142 (25%), Positives = 57/142 (40%), Gaps = 13/142 (9%)

Query: 15  RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74
            R  AR   V+ LYQ DI      +I  ++       D +            ++      
Sbjct: 2   NRTQAREWLVKLLYQYDISKLEPQKIFDKFLEDNDPEDEK------------DYIENTFF 49

Query: 75  GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134
           GV+    +ID  I   L + W  +R+  I  +I+R    E++    +P  V I+E V IA
Sbjct: 50  GVIKNVDNIDEKIKKYL-KNWDINRIAKIDLAIMRCSFYEILYSTDIPSSVSINEAVEIA 108

Query: 135 HDFFYGDEPKFINAVLDKVSRK 156
             +     P FIN +L  + R 
Sbjct: 109 KKYSTEKSPAFINGILGNLVRD 130


>gi|189347470|ref|YP_001943999.1| NusB antitermination factor [Chlorobium limicola DSM 245]
 gi|238692182|sp|B3EFQ8|NUSB_CHLL2 RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|189341617|gb|ACD91020.1| NusB antitermination factor [Chlorobium limicola DSM 245]
          Length = 164

 Score =  145 bits (367), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 39/153 (25%), Positives = 63/153 (41%), Gaps = 14/153 (9%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           R   R   +QALY I++             T     D             +++F ++I  
Sbjct: 5   RRQIREKILQALYTIELRDTDIDSAAGWLLTQEILDDPNA----------MKFFNMLIGS 54

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
           +      ID  I    T  W  SR+ +I  +ILR  + E++ C  +P +V I+E + IA 
Sbjct: 55  IKAHMSEIDCYIERH-TFNWDMSRIAIIDKNILRMALAEILYCEDIPPKVSINEAIEIAK 113

Query: 136 DF-FYGDEPKFINAVLDKVSRKEEIKRSGCVSA 167
            F       KF+N +LD +    E+K  G +  
Sbjct: 114 KFSSTEKSSKFVNGILDAIF--NELKTDGKIHK 144


>gi|145220268|ref|YP_001130977.1| NusB antitermination factor [Prosthecochloris vibrioformis DSM 265]
 gi|189035896|sp|A4SG66|NUSB_PROVI RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|145206432|gb|ABP37475.1| NusB antitermination factor [Chlorobium phaeovibrioides DSM 265]
          Length = 164

 Score =  145 bits (367), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 38/153 (24%), Positives = 69/153 (45%), Gaps = 14/153 (9%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           R   R   +QALY +++             T    AD +           +++F +++  
Sbjct: 5   RRQIREKILQALYTLELRDTDIDSAAGWLLTPEILADPKA----------MKFFNLLLGN 54

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
           + +  + ID  I++  T  W  SR+ +I  +ILR  + EL+ C  +P +V I+E + IA 
Sbjct: 55  IKEHMEEIDRYIAAH-TFNWDMSRIAIIDKNILRMAMAELLYCDDIPPKVSINEAIEIAK 113

Query: 136 DF-FYGDEPKFINAVLDKVSRKEEIKRSGCVSA 167
            F       KF+N +LD +     +K  G ++ 
Sbjct: 114 KFSSTDKSSKFVNGILDAIF--NALKEEGKINK 144


>gi|303245564|ref|ZP_07331847.1| NusB antitermination factor [Desulfovibrio fructosovorans JJ]
 gi|302492827|gb|EFL52692.1| NusB antitermination factor [Desulfovibrio fructosovorans JJ]
          Length = 177

 Score =  145 bits (367), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 36/161 (22%), Positives = 65/161 (40%), Gaps = 6/161 (3%)

Query: 1   MTIQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESV 60
           M  + +    K    R  AR  A + LY     G        E    R  A    DV   
Sbjct: 16  MPEEASHNGDKKPVSRRKARKQAFECLY-----GLIFESAADERSLRRVFARCPHDVAEG 70

Query: 61  YLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHS 120
                 E+   ++ GV   ++ +D  I    ++ W  SR+  +  +ILR  V E++    
Sbjct: 71  EDGSGQEFAWELVSGVWTNQRELDAHIVRF-SKNWKLSRIAKVELTILRLAVYEILYRSD 129

Query: 121 VPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKR 161
           +P+ V ++E + +A  +   +   FIN +LD +++  +   
Sbjct: 130 IPLRVALNEAIELAKRYGDENSRNFINGILDAIAKAVDSGE 170


>gi|329898127|ref|ZP_08272329.1| Transcription termination protein NusB [gamma proteobacterium
           IMCC3088]
 gi|328920907|gb|EGG28339.1| Transcription termination protein NusB [gamma proteobacterium
           IMCC3088]
          Length = 147

 Score =  145 bits (367), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 50/144 (34%), Positives = 75/144 (52%), Gaps = 13/144 (9%)

Query: 12  LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71
           +S  R  AR   VQALY+  +   S+T+I +E+            ++  + HVDLE+F+ 
Sbjct: 8   ISAERHKARHYTVQALYRWHMNEQSSTDIEAEFR-----------IDYDFSHVDLEYFQA 56

Query: 72  IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
           ++HGV+     ID  +   L  K      D +  +ILR G+ EL E   VP +V+I+E V
Sbjct: 57  LLHGVVKTHASIDAYLEPLLDRKLDDL--DAVELAILRMGLFELKERLDVPFKVVINEAV 114

Query: 132 CIAHDFFYGDEPKFINAVLDKVSR 155
            +   F   D  K+IN VLDK +R
Sbjct: 115 SLTRKFGATDGHKYINGVLDKAAR 138


>gi|329116212|ref|ZP_08244929.1| transcription antitermination factor NusB [Streptococcus parauberis
           NCFD 2020]
 gi|326906617|gb|EGE53531.1| transcription antitermination factor NusB [Streptococcus parauberis
           NCFD 2020]
          Length = 143

 Score =  145 bits (367), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 39/144 (27%), Positives = 64/144 (44%), Gaps = 7/144 (4%)

Query: 14  HRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVII 73
           + R   R  A QAL+ +++ G          E  +F  D +  VE         +   ++
Sbjct: 7   NSRRDLRERAFQALFNMELGG-------EFLEASQFAYDYDKIVEEGEKSDVPAFLLNLV 59

Query: 74  HGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCI 133
           +GV D K  +D LI+  L   WS  RL +   ++LR G+ E+      P  V ++E + I
Sbjct: 60  NGVNDHKVELDQLITENLKTGWSIERLTLSDKTMLRLGLYEIKYFEETPDRVALNEIIEI 119

Query: 134 AHDFFYGDEPKFINAVLDKVSRKE 157
           A  +      KFIN +L +  + E
Sbjct: 120 AKKYSDETSAKFINGLLSQFVKAE 143


>gi|311894818|dbj|BAJ27226.1| putative N utilization substance protein B homolog [Kitasatospora
           setae KM-6054]
          Length = 145

 Score =  145 bits (367), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 39/151 (25%), Positives = 69/151 (45%), Gaps = 9/151 (5%)

Query: 12  LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71
           ++  R  AR  A Q L++ D  G S   +++++         +  +  V      E+   
Sbjct: 1   MATARSKARTRAFQILFEADHRGVSPERVLADWIARARDPRPDEGIPQV-----AEYTMQ 55

Query: 72  IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
           ++ G     + ID LIS+     W+  R+ +   +++R G  ELI     P  V++ E V
Sbjct: 56  LVEGYAQHARTIDDLISTYAV-GWTIDRMPIADRNVIRLGAYELIWEDGTPDAVVLDEAV 114

Query: 132 CIAHDFFYGDEPKFINAVLDKVSRKEEIKRS 162
            IA +F   + P F+N +L   +R  E+K S
Sbjct: 115 EIAKEFSTDESPAFVNGLL---ARFMELKPS 142


>gi|238026450|ref|YP_002910681.1| transcription antitermination protein NusB [Burkholderia glumae
           BGR1]
 gi|237875644|gb|ACR27977.1| NusB antitermination factor [Burkholderia glumae BGR1]
          Length = 145

 Score =  145 bits (367), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 41/155 (26%), Positives = 64/155 (41%), Gaps = 14/155 (9%)

Query: 10  LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF 69
           +K S RR  +R  A Q LYQ  +   ST EI           D +L     Y   D E  
Sbjct: 1   MKKSARR-QSRELATQGLYQWLLSNASTGEI-----------DAQLRGAQGYDKADRELL 48

Query: 70  RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISE 129
             I++GV+     +  +++ CL       +L  +  ++L     EL      P  V+I+E
Sbjct: 49  ETILYGVIREHADLAAVLTPCLDR--PLEQLSPVERAVLLIATFELKHQIETPYRVVINE 106

Query: 130 YVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRSGC 164
            V +   F   D  K++N V DK++ K     +  
Sbjct: 107 AVELTKTFGGSDGYKYVNGVADKLALKLRPDEAAA 141


>gi|300784648|ref|YP_003764939.1| transcription antiterminator NusB [Amycolatopsis mediterranei U32]
 gi|299794162|gb|ADJ44537.1| transcription antiterminator NusB [Amycolatopsis mediterranei U32]
          Length = 151

 Score =  145 bits (366), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 37/153 (24%), Positives = 66/153 (43%), Gaps = 13/153 (8%)

Query: 1   MTIQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESV 60
           M       +   +  R  AR  AV+ LY+          ++++             V + 
Sbjct: 1   MPTSKPHPNRGGAISRRQARRRAVEMLYEAVQRDTDAVTLLAD------------RVGAT 48

Query: 61  YLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHS 120
            +    ++   ++ GV  RK  ID L++    + W+  R+  +  ++LR GV EL+    
Sbjct: 49  EVDPIGDYTITLVEGVTGRKTQIDELLAEH-AQGWTLERMPKVDLAVLRVGVYELLWAED 107

Query: 121 VPVEVIISEYVCIAHDFFYGDEPKFINAVLDKV 153
           VP  V I E V +A +    D P+F+N VL ++
Sbjct: 108 VPDPVAIDEAVGLAKELSTDDSPRFVNGVLGRI 140


>gi|148379847|ref|YP_001254388.1| N utilization substance protein B [Clostridium botulinum A str.
           ATCC 3502]
 gi|153933180|ref|YP_001384144.1| transcription antitermination protein NusB [Clostridium botulinum A
           str. ATCC 19397]
 gi|153934479|ref|YP_001387685.1| transcription antitermination protein NusB [Clostridium botulinum A
           str. Hall]
 gi|153938662|ref|YP_001391208.1| transcription antitermination protein NusB [Clostridium botulinum F
           str. Langeland]
 gi|168180474|ref|ZP_02615138.1| N utilization substance protein B [Clostridium botulinum NCTC 2916]
 gi|168184572|ref|ZP_02619236.1| N utilization substance protein B [Clostridium botulinum Bf]
 gi|170757090|ref|YP_001781437.1| transcription antitermination protein NusB [Clostridium botulinum
           B1 str. Okra]
 gi|237795301|ref|YP_002862853.1| N utilization substance protein B [Clostridium botulinum Ba4 str.
           657]
 gi|166215682|sp|A7FUU1|NUSB_CLOB1 RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|166215683|sp|A5I310|NUSB_CLOBH RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|166215684|sp|A7GEJ8|NUSB_CLOBL RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|229620057|sp|B1IMN9|NUSB_CLOBK RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|259514805|sp|C3KXC7|NUSB_CLOB6 RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|148289331|emb|CAL83427.1| N utilization substance protein b [Clostridium botulinum A str.
           ATCC 3502]
 gi|152929224|gb|ABS34724.1| N utilization substance protein B [Clostridium botulinum A str.
           ATCC 19397]
 gi|152930393|gb|ABS35892.1| N utilization substance protein B [Clostridium botulinum A str.
           Hall]
 gi|152934558|gb|ABS40056.1| N utilization substance protein B [Clostridium botulinum F str.
           Langeland]
 gi|169122302|gb|ACA46138.1| N utilization substance protein B [Clostridium botulinum B1 str.
           Okra]
 gi|182668651|gb|EDT80629.1| N utilization substance protein B [Clostridium botulinum NCTC 2916]
 gi|182672364|gb|EDT84325.1| N utilization substance protein B [Clostridium botulinum Bf]
 gi|229261715|gb|ACQ52748.1| N utilization substance protein B [Clostridium botulinum Ba4 str.
           657]
 gi|295319244|gb|ADF99621.1| N utilization substance protein B [Clostridium botulinum F str.
           230613]
 gi|322806136|emb|CBZ03704.1| transcription termination protein NusB [Clostridium botulinum
           H04402 065]
          Length = 143

 Score =  145 bits (366), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 43/142 (30%), Positives = 68/142 (47%), Gaps = 4/142 (2%)

Query: 15  RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCAD--TELDVESVYLH-VDLEWFRV 71
            R  +R  A++ L+Q  + G +  E +   +  R   +   E D ESV L  VD+++ + 
Sbjct: 2   NRRKSREVAMRLLFQTTLNGENLEEALENLKDVRESEEITKEKDYESVDLKDVDIDYVKR 61

Query: 72  IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
           II G+ + K+ ID  I   L + W   RL  +  SILR    EL     +P  V ++E +
Sbjct: 62  IIKGIEENKEEIDEKIKGNL-KNWKIERLSKVDLSILRLCTYELKFEEDIPNRVSVNEAI 120

Query: 132 CIAHDFFYGDEPKFINAVLDKV 153
            +A  +       FIN VL K+
Sbjct: 121 ELAKKYSGEKSATFINGVLGKM 142


>gi|54293711|ref|YP_126126.1| hypothetical protein lpl0764 [Legionella pneumophila str. Lens]
 gi|54296754|ref|YP_123123.1| hypothetical protein lpp0793 [Legionella pneumophila str. Paris]
 gi|148360619|ref|YP_001251826.1| transcription termination factor NusB [Legionella pneumophila str.
           Corby]
 gi|296106315|ref|YP_003618015.1| N utilization substance protein B [Legionella pneumophila 2300/99
           Alcoy]
 gi|81601476|sp|Q5WYH2|NUSB_LEGPL RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|81601958|sp|Q5X720|NUSB_LEGPA RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|166215694|sp|A5IGI0|NUSB_LEGPC RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|53750539|emb|CAH11941.1| hypothetical protein lpp0793 [Legionella pneumophila str. Paris]
 gi|53753543|emb|CAH14998.1| hypothetical protein lpl0764 [Legionella pneumophila str. Lens]
 gi|148282392|gb|ABQ56480.1| transcription termination factor NusB [Legionella pneumophila str.
           Corby]
 gi|295648216|gb|ADG24063.1| N utilization substance protein B [Legionella pneumophila 2300/99
           Alcoy]
 gi|307609522|emb|CBW99020.1| hypothetical protein LPW_08051 [Legionella pneumophila 130b]
          Length = 147

 Score =  145 bits (366), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 35/143 (24%), Positives = 69/143 (48%), Gaps = 13/143 (9%)

Query: 14  HRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVII 73
             +  AR  A+QALYQ  + G    EI +++ T                 VD E+F  ++
Sbjct: 7   RGKRRARKFALQALYQWLMSGTDLHEIEAQFRTIN-----------NMDKVDGEYFCRLL 55

Query: 74  HGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCI 133
           +G+    + ++  +   L  +   + L+ I  ++LR G  EL  C  +P +VI+ E V +
Sbjct: 56  YGIPTHVEALEASLLPYLDRE--INALNPIELTVLRIGSFELFHCPEIPYKVILDESVSL 113

Query: 134 AHDFFYGDEPKFINAVLDKVSRK 156
             +F   +  +++N VL+ ++++
Sbjct: 114 TKEFGSQEGYRYVNGVLNNLAKQ 136


>gi|188590523|ref|YP_001921552.1| transcription antitermination factor NusB [Clostridium botulinum E3
           str. Alaska E43]
 gi|238689705|sp|B2V4R8|NUSB_CLOBA RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|188500804|gb|ACD53940.1| transcription antitermination factor NusB [Clostridium botulinum E3
           str. Alaska E43]
          Length = 133

 Score =  145 bits (366), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 37/142 (26%), Positives = 64/142 (45%), Gaps = 10/142 (7%)

Query: 15  RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74
            R ++R  A++ L+ + +   +  E +  +           + ES    +D+ + + I+ 
Sbjct: 2   NRKLSREKAMELLFGMTLNTDNCEETLGNFID---------NYESDIKELDITYIKRILI 52

Query: 75  GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134
           GV + K +ID  IS  L   W   R+  +   ILR  V EL+    +P  V I+E + I 
Sbjct: 53  GVENNKDNIDEAISKNLC-NWKIDRISKVNLCILRLAVYELLHDEEIPNRVAINEALEIT 111

Query: 135 HDFFYGDEPKFINAVLDKVSRK 156
             +       FIN VLD + +K
Sbjct: 112 KKYSDEKSVSFINGVLDNILKK 133


>gi|21219991|ref|NP_625770.1| transcription antitermination protein NusB [Streptomyces coelicolor
           A3(2)]
 gi|256788910|ref|ZP_05527341.1| transcription antitermination protein NusB [Streptomyces lividans
           TK24]
 gi|289772797|ref|ZP_06532175.1| transcription antitermination factor NusB [Streptomyces lividans
           TK24]
 gi|22095971|sp|Q9KXR0|NUSB_STRCO RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|8249949|emb|CAB93370.1| putative NusB-family protein [Streptomyces coelicolor A3(2)]
 gi|289702996|gb|EFD70425.1| transcription antitermination factor NusB [Streptomyces lividans
           TK24]
          Length = 142

 Score =  145 bits (366), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 38/147 (25%), Positives = 70/147 (47%), Gaps = 12/147 (8%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           R  AR  A Q L++ D  G     +++++  +      +  V         E+   ++ G
Sbjct: 4   RNTARKRAFQILFEGDQRGADVLTVLADWVRHSRSDTRQPPVS--------EYTMELVEG 55

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
              R + ID LI+   +  W+  R+ ++  +ILR G  EL+   + P  V++ E V +A 
Sbjct: 56  YAGRAERIDELIAQY-SVDWTLDRMPVVDRNILRLGAYELLWVDATPDAVVLDEMVQLAK 114

Query: 136 DFFYGDEPKFINAVLDKVSRKEEIKRS 162
           +F   + P FIN +L ++   +E+K S
Sbjct: 115 EFSTDESPAFINGLLGRL---KELKPS 138


>gi|187935150|ref|YP_001886595.1| transcription antitermination factor NusB [Clostridium botulinum B
           str. Eklund 17B]
 gi|238691670|sp|B2TRN6|NUSB_CLOBB RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|187723303|gb|ACD24524.1| transcription antitermination factor NusB [Clostridium botulinum B
           str. Eklund 17B]
          Length = 133

 Score =  145 bits (366), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 36/142 (25%), Positives = 64/142 (45%), Gaps = 10/142 (7%)

Query: 15  RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74
            R ++R  A++ L+ + +   +  E +  +           + ES    +D+ + + I+ 
Sbjct: 2   NRKLSREKAMELLFGMTLNTDNCEETLENFID---------NYESDIKELDITYIKRILI 52

Query: 75  GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134
           GV + K +ID  IS  L   W   R+  +   ILR  V EL+    +P  V I+E + I 
Sbjct: 53  GVENNKDNIDESISKNLC-NWKIDRISKVNLCILRLAVYELLHDEEIPNRVAINEALEIT 111

Query: 135 HDFFYGDEPKFINAVLDKVSRK 156
             +       F+N VLD + +K
Sbjct: 112 KKYSDEKSVSFVNGVLDNILKK 133


>gi|189499470|ref|YP_001958940.1| NusB antitermination factor [Chlorobium phaeobacteroides BS1]
 gi|238692264|sp|B3EM81|NUSB_CHLPB RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|189494911|gb|ACE03459.1| NusB antitermination factor [Chlorobium phaeobacteroides BS1]
          Length = 168

 Score =  145 bits (366), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 42/159 (26%), Positives = 72/159 (45%), Gaps = 16/159 (10%)

Query: 10  LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF 69
           +K   RR   R   +QALY I++ G           T +   D+            + ++
Sbjct: 1   MKTYRRR--IREKIIQALYTIELTGADMDSASDWLITPQIAEDS----------GAVRFY 48

Query: 70  RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISE 129
           + ++  + D K+ ID  I+   T  W  SR+ +I  +ILR  + EL+    +P +V I+E
Sbjct: 49  KQVLQSIQDHKEEIDGYITKH-TFNWDMSRIAIIDKNILRMALAELLYFEDIPPKVSINE 107

Query: 130 YVCIAHDF-FYGDEPKFINAVLDKVSRKEEIKRSGCVSA 167
            + IA  F       KF+N +LD  +   ++K SG +  
Sbjct: 108 AIEIAKKFNSTDKSSKFVNGILD--ATYNDLKSSGKIKK 144


>gi|163747437|ref|ZP_02154789.1| transcription antitermination factor NusB [Oceanibulbus indolifex
           HEL-45]
 gi|161379290|gb|EDQ03707.1| transcription antitermination factor NusB [Oceanibulbus indolifex
           HEL-45]
          Length = 158

 Score =  145 bits (366), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 48/157 (30%), Positives = 81/157 (51%), Gaps = 10/157 (6%)

Query: 5   DNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHV 64
           + K+ +K       +RL AVQAL+Q++    +   +  E+  +RF A  E D        
Sbjct: 9   NQKRKMK-----SASRLYAVQALFQMEHSAQTVDVVRHEFIDHRFGAVYEGDE---MQEG 60

Query: 65  DLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVE 124
           D++ F  ++   ++ +  ID + +  +  KW+ +R+D  L ++ RA   E       P  
Sbjct: 61  DVDHFSRVLEDAVNYQAPIDQMANRAIVAKWAIARIDPTLRALFRAAGAEFRH-DETPPR 119

Query: 125 VIISEYVCIAHDFF-YGDEPKFINAVLDKVSRKEEIK 160
           V+I EYV +AH FF  G EP F+NAVLD ++R+   +
Sbjct: 120 VVIKEYVDVAHAFFPEGREPSFVNAVLDHMAREARPE 156


>gi|193214274|ref|YP_001995473.1| NusB antitermination factor [Chloroherpeton thalassium ATCC 35110]
 gi|238692701|sp|B3QV72|NUSB_CHLT3 RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|193087751|gb|ACF13026.1| NusB antitermination factor [Chloroherpeton thalassium ATCC 35110]
          Length = 211

 Score =  145 bits (366), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 35/152 (23%), Positives = 65/152 (42%), Gaps = 13/152 (8%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           R   R  A+Q LY  ++      ++          AD +            ++   II+ 
Sbjct: 5   RRQIRELAMQVLYAYEVRKEKVDKVAKGIIPEDVVADIKA----------KDFIFKIINS 54

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
           V+   Q ID  I+    + W  +R+ +I  +++R  + E++    VP +V I+E + IA 
Sbjct: 55  VIQNIQDIDTHIAKH-ADNWELNRMAIIDKNLMRIAIAEMLYLDDVPPKVSINEAIEIAK 113

Query: 136 DFFYGDEPKFINAVLDKVSRKEEIKRSGCVSA 167
            +      KF+N +LD  +   E+K  G +  
Sbjct: 114 RYSTDKSSKFVNGILD--ATYNEVKSKGVLHK 143


>gi|251778082|ref|ZP_04821002.1| transcription antitermination factor NusB [Clostridium botulinum E1
           str. 'BoNT E Beluga']
 gi|243082397|gb|EES48287.1| transcription antitermination factor NusB [Clostridium botulinum E1
           str. 'BoNT E Beluga']
          Length = 133

 Score =  144 bits (365), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 37/142 (26%), Positives = 64/142 (45%), Gaps = 10/142 (7%)

Query: 15  RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74
            R ++R  A++ L+ + +   +  E +  +           + ES    +D+ + + I+ 
Sbjct: 2   NRKLSREKAMELLFGMTLNTDNCEETLENFID---------NYESDIKELDITYIKRILI 52

Query: 75  GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134
           GV + K +ID  IS  L   W   R+  +   ILR  V EL+    +P  V I+E + I 
Sbjct: 53  GVENNKDNIDEAISKNLC-NWKIDRISKVNLCILRLAVYELLHDEEIPNRVAINEALEIT 111

Query: 135 HDFFYGDEPKFINAVLDKVSRK 156
             +       FIN VLD + +K
Sbjct: 112 KKYSDEKSVSFINGVLDNILKK 133


>gi|256832560|ref|YP_003161287.1| NusB antitermination factor [Jonesia denitrificans DSM 20603]
 gi|256686091|gb|ACV08984.1| NusB antitermination factor [Jonesia denitrificans DSM 20603]
          Length = 138

 Score =  144 bits (365), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 34/138 (24%), Positives = 59/138 (42%), Gaps = 12/138 (8%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           R  AR  AV  LY+ D    S  +++                +        ++   ++ G
Sbjct: 4   RSKARKRAVNILYEADQRNLSAAQVLDIRLA-----------DPGVPSALPQYAVDLVEG 52

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
           V+  ++ ID ++ +  +  W   R+  +  +ILR G  EL+    VP  V I E V +A 
Sbjct: 53  VILHRERIDEILETY-SRGWPLRRMPAVDRAILRLGTWELLYNDDVPDIVAIDEAVDLAR 111

Query: 136 DFFYGDEPKFINAVLDKV 153
           +    D P F+N +L +V
Sbjct: 112 ELSTEDSPSFVNGLLGRV 129


>gi|330838907|ref|YP_004413487.1| NusB antitermination factor [Selenomonas sputigena ATCC 35185]
 gi|329746671|gb|AEC00028.1| NusB antitermination factor [Selenomonas sputigena ATCC 35185]
          Length = 140

 Score =  144 bits (365), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 35/141 (24%), Positives = 64/141 (45%), Gaps = 4/141 (2%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           R  AR AA+Q L+Q+++     +E  SE     +  D  ++   V    D  +   ++ G
Sbjct: 3   RRQAREAALQTLFQLELN--PPSEAASEEACQMWALDAAVEEMPVETKRDYSYAASLVRG 60

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIE-CHSVPVEVIISEYVCIA 134
             +    ID  I+   T  W   R+  +  +I+R  + E+      V V + I+E V +A
Sbjct: 61  TREHLAAIDEEIA-ASTHDWKLDRMTGVDRNIVRIALYEMKYGAEKVDVGIAINEAVELA 119

Query: 135 HDFFYGDEPKFINAVLDKVSR 155
             F   D  +++N +L  ++R
Sbjct: 120 KKFGTDDSSRYVNGILGGLAR 140


>gi|71909351|ref|YP_286938.1| NusB antitermination factor [Dechloromonas aromatica RCB]
 gi|119390763|sp|Q479L3|NUSB_DECAR RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|71848972|gb|AAZ48468.1| NusB antitermination factor [Dechloromonas aromatica RCB]
          Length = 163

 Score =  144 bits (365), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 42/172 (24%), Positives = 74/172 (43%), Gaps = 18/172 (10%)

Query: 1   MTIQDNKKDLKLSHR--RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVE 58
           ++  ++ +D+K   +  R  AR   +Q LYQ  + G     I +                
Sbjct: 5   LSDSEHPQDVKAPPKSARRRAREFVLQGLYQWRVGGADEASIEAY-----------APEM 53

Query: 59  SVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIEC 118
             +   D E+F   + GV+ +++ +   +S+ +     F+ L  +   IL  G  E++  
Sbjct: 54  EGFAKADREFFVGTLRGVISQQEKLIEQVSTHIDR--PFNELSPVEACILMLGSFEMLNH 111

Query: 119 HSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRSGCVSAITQ 170
              P  VII+E + +   F   D  K++N VLDKV+    I R   V+A  Q
Sbjct: 112 AETPYRVIINEAIELTKAFGGTDGHKYVNGVLDKVA---AILRPDEVAARKQ 160


>gi|260887340|ref|ZP_05898603.1| transcription antitermination factor NusB [Selenomonas sputigena
           ATCC 35185]
 gi|260862976|gb|EEX77476.1| transcription antitermination factor NusB [Selenomonas sputigena
           ATCC 35185]
          Length = 160

 Score =  144 bits (365), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 35/141 (24%), Positives = 64/141 (45%), Gaps = 4/141 (2%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           R  AR AA+Q L+Q+++     +E  SE     +  D  ++   V    D  +   ++ G
Sbjct: 23  RRQAREAALQTLFQLELN--PPSEAASEEACQMWALDAAVEEMPVETKRDYSYAASLVRG 80

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIE-CHSVPVEVIISEYVCIA 134
             +    ID  I+   T  W   R+  +  +I+R  + E+      V V + I+E V +A
Sbjct: 81  TREHLAAIDEEIA-ASTHDWKLDRMTGVDRNIVRIALYEMKYGAEKVDVGIAINEAVELA 139

Query: 135 HDFFYGDEPKFINAVLDKVSR 155
             F   D  +++N +L  ++R
Sbjct: 140 KKFGTDDSSRYVNGILGGLAR 160


>gi|332670495|ref|YP_004453503.1| NusB antitermination factor [Cellulomonas fimi ATCC 484]
 gi|332339533|gb|AEE46116.1| NusB antitermination factor [Cellulomonas fimi ATCC 484]
          Length = 138

 Score =  144 bits (365), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 30/139 (21%), Positives = 61/139 (43%), Gaps = 12/139 (8%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           R  AR  A+  L++ D  G     ++++              E        ++   ++ G
Sbjct: 4   RTKARKRALDVLFEADQRGLDPVTLLAQRVA-----------EPGTEAALPQYSVDLVEG 52

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
           V+ R++ ID L+++     W+  R+  +  ++LR G  E++    VP  V + E V +A 
Sbjct: 53  VIARRERIDELLATH-AHGWTIERMPAVDRALLRLGTWEILFNDDVPDAVAVDEAVELAR 111

Query: 136 DFFYGDEPKFINAVLDKVS 154
                + P F+N +L ++ 
Sbjct: 112 SLSTDESPSFVNGLLGRIV 130


>gi|82751129|ref|YP_416870.1| transcription antitermination protein NusB [Staphylococcus aureus
           RF122]
 gi|119390829|sp|Q2YYB7|NUSB_STAAB RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|82656660|emb|CAI81086.1| probable N utilization substance protein B [Staphylococcus aureus
           RF122]
          Length = 129

 Score =  144 bits (365), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 38/140 (27%), Positives = 64/140 (45%), Gaps = 13/140 (9%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           R  +R+ A Q L+Q+++        ++  E   F  D   D+       D E+   ++ G
Sbjct: 3   RKESRVQAFQTLFQLEMKDSD----LTINEAISFIKDGNPDL-------DFEFIHWLVSG 51

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
           V D +  +D  IS  L + W+ +RL      ILR    E++     P +V+++E V +  
Sbjct: 52  VKDHEPVLDETISPYL-KDWTIARLLKTDRIILRMATYEILHS-DTPAKVVMNEAVELTK 109

Query: 136 DFFYGDEPKFINAVLDKVSR 155
            F   D  KFIN VL  + +
Sbjct: 110 QFSDDDHYKFINGVLSNIKK 129


>gi|319760371|ref|YP_004124309.1| N utilization substance protein B-like protein [Candidatus
           Blochmannia vafer str. BVAF]
 gi|318039085|gb|ADV33635.1| N utilization substance protein B-like protein [Candidatus
           Blochmannia vafer str. BVAF]
          Length = 140

 Score =  144 bits (365), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 36/142 (25%), Positives = 66/142 (46%), Gaps = 13/142 (9%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           R +ARL A+QALY          EI +   + +   +            D+ +FR +  G
Sbjct: 6   RRLARLCALQALYSWQFSKNDLIEIENYIVSIQNIQNF-----------DISYFRELYIG 54

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
           V++    +D L+   L        +  +  S+L   + EL +C+ +P +V+++E + +A 
Sbjct: 55  VINCISDLDKLMIPYLFR--DLKTIGYVEYSVLLIALFELTQCYDIPYKVVMNEAIELAK 112

Query: 136 DFFYGDEPKFINAVLDKVSRKE 157
            F      KFIN VL+K+  ++
Sbjct: 113 IFGSEKSYKFINGVLNKIVTEK 134


>gi|121534502|ref|ZP_01666325.1| NusB antitermination factor [Thermosinus carboxydivorans Nor1]
 gi|121306995|gb|EAX47914.1| NusB antitermination factor [Thermosinus carboxydivorans Nor1]
          Length = 141

 Score =  144 bits (365), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 32/146 (21%), Positives = 63/146 (43%), Gaps = 12/146 (8%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           R  AR  A+Q L+Q+D         ++     R                  E+ R ++ G
Sbjct: 3   RRKAREIALQTLFQLDFNDTDPVAALAALVQDR----------DDVSKNAQEYARQLVTG 52

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIE-CHSVPVEVIISEYVCIA 134
             D    ID +I+    ++W   R+  +  +I+R  + E+      +P  V+I+E V +A
Sbjct: 53  TKDHLAEIDAIIAGQ-AKEWKLERMAGVDRNIVRMAIYEMRYGQEKLPPNVVINEAVELA 111

Query: 135 HDFFYGDEPKFINAVLDKVSRKEEIK 160
             F   +  +F+N +L  + +K+ ++
Sbjct: 112 KIFSTEESGRFVNGILGALVKKKALQ 137


>gi|78187533|ref|YP_375576.1| NusB antitermination factor [Chlorobium luteolum DSM 273]
 gi|119390794|sp|Q3B298|NUSB_PELLD RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|78167435|gb|ABB24533.1| NusB antitermination factor [Chlorobium luteolum DSM 273]
          Length = 163

 Score =  144 bits (365), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 39/153 (25%), Positives = 68/153 (44%), Gaps = 14/153 (9%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           R   R   +QALY +++             T     D             +++F +++  
Sbjct: 5   RRQIREKILQALYTLELRETDIESAAGWLLTPEILEDPNA----------MKFFNLLLKS 54

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
           + D ++ ID  I++  T  W  SR+ +I  +ILR  + EL+ C  +P +V I+E + IA 
Sbjct: 55  IKDNREEIDRYIAAH-TFNWDMSRIAIIDKNILRMALAELLYCEDIPPKVSINEAIEIAK 113

Query: 136 DF-FYGDEPKFINAVLDKVSRKEEIKRSGCVSA 167
            F       KF+N +LD +    E+K  G +  
Sbjct: 114 KFNSTDKSSKFVNGILDAIF--NELKTEGKIKK 144


>gi|330685971|gb|EGG97594.1| transcription antitermination factor NusB [Staphylococcus
           epidermidis VCU121]
          Length = 128

 Score =  144 bits (365), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 40/138 (28%), Positives = 62/138 (44%), Gaps = 13/138 (9%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           R  +R+ A Q L+Q++I        ++  E   F  D        Y  +D ++   ++ G
Sbjct: 3   RKESRVQAFQTLFQLEIKDTD----LTIKEAINFIKD-------DYPDLDFDFINWLVTG 51

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
           V D +  +D  I   L + WS  RL      ILR    E++     P +V+I+E V +A 
Sbjct: 52  VKDHEPVLDEKIKPYL-KDWSLERLLKTDRIILRMATFEILHS-DTPAKVVINEAVELAK 109

Query: 136 DFFYGDEPKFINAVLDKV 153
            F   D  KFIN VL  +
Sbjct: 110 QFSDDDHYKFINGVLSNI 127


>gi|327439755|dbj|BAK16120.1| transcription termination factor [Solibacillus silvestris StLB046]
          Length = 128

 Score =  144 bits (365), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 38/142 (26%), Positives = 64/142 (45%), Gaps = 15/142 (10%)

Query: 15  RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74
           +R  AR  A+QAL+Q+D    +  E I         ++               +   ++ 
Sbjct: 2   KRTEARQKALQALFQLDSTELTIEEAIGHVLEEEQKSN--------------AFLEQLVR 47

Query: 75  GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134
           G  +  + ID  +   L EKW+ +RL  I  +ILR  V EL+     P +VI++E + ++
Sbjct: 48  GTTENIEAIDAALEKNL-EKWTINRLPKIERTILRLAVYELLYAEETPNKVIMNEAIELS 106

Query: 135 HDFFYGDEPKFINAVLDKVSRK 156
             F      KF+N VL K + +
Sbjct: 107 KTFGDEKSSKFVNGVLSKFTEQ 128


>gi|285019596|ref|YP_003377307.1| transcription termination factor NusB [Xanthomonas albilineans GPE
           PC73]
 gi|283474814|emb|CBA17313.1| putative transcription termination factor nusb protein [Xanthomonas
           albilineans]
          Length = 155

 Score =  144 bits (365), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 33/139 (23%), Positives = 60/139 (43%), Gaps = 13/139 (9%)

Query: 25  QALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHID 84
           QA+Y   I G +   +I+++             E  +   DL +F  ++ GV+  +  +D
Sbjct: 29  QAIYAWQISGGNAQHVIAQFAH-----------EQAHEIADLVYFENLVEGVLKHRAELD 77

Query: 85  LLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPK 144
             +   L    +   +D I  ++LR    EL+    VP  V+I+E +  A  F       
Sbjct: 78  AALVGYLDR--TVEEVDAIERAVLRLAAYELLYRMDVPYRVVINEAIETAKRFGSEHGHT 135

Query: 145 FINAVLDKVSRKEEIKRSG 163
           ++N VLD+ + +     SG
Sbjct: 136 YVNGVLDRAALEWRAVESG 154


>gi|262371010|ref|ZP_06064333.1| transcription termination L factor [Acinetobacter johnsonii SH046]
 gi|262314086|gb|EEY95130.1| transcription termination L factor [Acinetobacter johnsonii SH046]
          Length = 152

 Score =  144 bits (365), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 38/139 (27%), Positives = 64/139 (46%), Gaps = 13/139 (9%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           +  AR  AVQ +Y+  +      EI +              VE+    VDL ++  ++  
Sbjct: 12  KRKARRFAVQGIYEWQMSHNPVHEIEA-----------RTRVENAMHKVDLSYYHELLTQ 60

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
           V+   + +D L+   L  +   S LD +  + LR G  EL E   +P  V++ E + +A 
Sbjct: 61  VVANHEALDALLIPVLDRE--VSALDGVELATLRLGAYELKEHLEIPYRVVLDEAIELAK 118

Query: 136 DFFYGDEPKFINAVLDKVS 154
            F   D  K+IN VLD+++
Sbjct: 119 HFGGADSHKYINGVLDRLA 137


>gi|312438007|gb|ADQ77078.1| transcription antitermination factor NusB [Staphylococcus aureus
           subsp. aureus TCH60]
          Length = 132

 Score =  144 bits (365), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 40/143 (27%), Positives = 65/143 (45%), Gaps = 13/143 (9%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           R  +R+ A Q L+Q+++        ++  E   F  D   D+       D E+   ++ G
Sbjct: 3   RKESRVQAFQTLFQLEMKDSD----LTINEAISFIKDDNPDL-------DFEFIHWLVSG 51

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
           V D +  +D  IS  L + W+ +RL      ILR    E++     P +V+++E V +  
Sbjct: 52  VKDHEPVLDETISPYL-KDWTIARLLKTDRIILRMATYEILHS-DTPAKVVMNEAVELTK 109

Query: 136 DFFYGDEPKFINAVLDKVSRKEE 158
            F   D  KFIN VL  +  K E
Sbjct: 110 QFSDDDHYKFINGVLSNIKNKIE 132


>gi|239637666|ref|ZP_04678638.1| transcription antitermination factor NusB [Staphylococcus warneri
           L37603]
 gi|239596884|gb|EEQ79409.1| transcription antitermination factor NusB [Staphylococcus warneri
           L37603]
          Length = 128

 Score =  144 bits (365), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 40/138 (28%), Positives = 62/138 (44%), Gaps = 13/138 (9%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           R  +R+ A Q L+Q++I        ++  E   F  D        Y  +D ++   ++ G
Sbjct: 3   RKESRVQAFQTLFQLEIKDTD----LTIKEAINFIKD-------DYPDLDFDFINWLVTG 51

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
           V D +  +D  I   L + WS  RL      ILR    E++     P +V+I+E V +A 
Sbjct: 52  VKDHEPVLDEKIKPYL-KDWSLERLLKTDRIILRMATFEILHS-DTPSKVVINEAVELAK 109

Query: 136 DFFYGDEPKFINAVLDKV 153
            F   D  KFIN VL  +
Sbjct: 110 QFSDDDHYKFINGVLSNI 127


>gi|315639636|ref|ZP_07894776.1| N utilization substance protein B [Enterococcus italicus DSM 15952]
 gi|315484597|gb|EFU75053.1| N utilization substance protein B [Enterococcus italicus DSM 15952]
          Length = 150

 Score =  144 bits (364), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 35/150 (23%), Positives = 64/150 (42%), Gaps = 3/150 (2%)

Query: 10  LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF 69
           +     R   R  AVQ+L+ +D     + +    +       D   + E  ++    ++ 
Sbjct: 1   MSKELSRHDIREMAVQSLFPLDFSTEFSKQDAIAHAIEVNQYDLLDEEEENFVP---DYL 57

Query: 70  RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISE 129
             ++ GV + K  +D  I S L   W   RL  +  +ILR  + E+     VP +V+++E
Sbjct: 58  DWLVSGVCEHKNELDKEIESFLRPGWKIGRLAKMDVTILRLAIFEMQHAEDVPNKVVLNE 117

Query: 130 YVCIAHDFFYGDEPKFINAVLDKVSRKEEI 159
            + +   F      KF+N VL  ++ K E 
Sbjct: 118 AIELTKTFSDDQSRKFVNGVLSSINNKLEA 147


>gi|302525862|ref|ZP_07278204.1| transcription antitermination factor NusB [Streptomyces sp. AA4]
 gi|302434757|gb|EFL06573.1| transcription antitermination factor NusB [Streptomyces sp. AA4]
          Length = 152

 Score =  144 bits (364), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 34/138 (24%), Positives = 65/138 (47%), Gaps = 13/138 (9%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           R  AR  AV+ LY+          ++++             V +V +    ++   ++ G
Sbjct: 17  RRQARRRAVEMLYEAAQRSADPVTLLAD------------RVGAVEVDPVADYTITVVEG 64

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
           V   ++ ID L++   ++ W+  R+  +  ++LR GV E++    VP  V I E V +A 
Sbjct: 65  VTAHRERIDELLAEH-SQGWTLERMPPVDLAVLRVGVYEMLWSADVPDAVAIDEAVGLAK 123

Query: 136 DFFYGDEPKFINAVLDKV 153
           +    D P+F+N VL ++
Sbjct: 124 ELSTDDSPRFVNGVLGRI 141


>gi|270308448|ref|YP_003330506.1| transcription antitermination factor NusB [Dehalococcoides sp. VS]
 gi|270154340|gb|ACZ62178.1| transcription antitermination factor NusB [Dehalococcoides sp. VS]
          Length = 143

 Score =  144 bits (364), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 39/144 (27%), Positives = 68/144 (47%), Gaps = 12/144 (8%)

Query: 12  LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71
           ++  R  AR   +QALY+ D+ G +  +++    T           E+     + E+   
Sbjct: 1   MTTSRRKAREIVLQALYEQDLAGHNAEDVLRRLLT-----------ETPQTEENTEFIFR 49

Query: 72  IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
           + + V+  K+ +D  I    +  W   +L  I  ++LR  + E+I  + VPV+V I+E V
Sbjct: 50  LTNAVVKHKELLDENIRQFASA-WPVEQLSYIDRNVLRLAIFEIIHENDVPVKVAINEAV 108

Query: 132 CIAHDFFYGDEPKFINAVLDKVSR 155
            +A  F      +FIN VL  VS+
Sbjct: 109 ELAKSFGGNSSARFINGVLSSVSK 132


>gi|56964231|ref|YP_175962.1| transcription antitermination protein NusB [Bacillus clausii
           KSM-K16]
 gi|81600830|sp|Q5WF59|NUSB_BACSK RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|56910474|dbj|BAD65001.1| N utilization substance protein NusB [Bacillus clausii KSM-K16]
          Length = 133

 Score =  144 bits (364), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 39/138 (28%), Positives = 66/138 (47%), Gaps = 15/138 (10%)

Query: 15  RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74
            R +ARL AVQ LYQ+ +I  +  + I          D E   E         ++  ++H
Sbjct: 2   NRRVARLRAVQTLYQLTLIDINVDKAIE-----NTLNDEEEPSE---------FYNTLVH 47

Query: 75  GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134
           G ++ +  ID  +S  L + ++  RL  +  +I R G+ E++    +PV V ++E + +A
Sbjct: 48  GTLEHQDEIDGYLSENL-KGYTLDRLGHVDRAIARMGLFEMLYLDDIPVNVTLNEAIELA 106

Query: 135 HDFFYGDEPKFINAVLDK 152
             F   D  +FIN VL  
Sbjct: 107 KAFGGTDAGRFINGVLSN 124


>gi|306834238|ref|ZP_07467357.1| transcription antitermination factor NusB [Streptococcus bovis ATCC
           700338]
 gi|304423587|gb|EFM26734.1| transcription antitermination factor NusB [Streptococcus bovis ATCC
           700338]
          Length = 142

 Score =  144 bits (364), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 34/144 (23%), Positives = 58/144 (40%), Gaps = 7/144 (4%)

Query: 11  KLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFR 70
             ++ R   R  A QAL+ ++  G             +F    +  +E         +  
Sbjct: 4   NFTNSRRDLRERAFQALFSLEFGGEYLAAA-------QFAYTYDKTIEEDDTIDVPVFLL 56

Query: 71  VIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEY 130
            ++ GV D K  ID  I + L   WS  RL +   ++LR G+ E+      P  V ++E 
Sbjct: 57  NLVKGVQDLKFEIDQQIETHLKSGWSLERLTLTDRALLRLGLYEIKYFEETPGRVAVNEI 116

Query: 131 VCIAHDFFYGDEPKFINAVLDKVS 154
           + IA  +      KF+N +L +  
Sbjct: 117 IEIAKKYSDDTSAKFVNGLLSQFV 140


>gi|253314894|ref|ZP_04838107.1| transcription antitermination protein NusB [Staphylococcus aureus
           subsp. aureus str. CF-Marseille]
          Length = 129

 Score =  144 bits (364), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 38/140 (27%), Positives = 64/140 (45%), Gaps = 13/140 (9%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           R  +R+ A Q L+Q+++        ++  E   F  D   D+       D E+   ++ G
Sbjct: 3   RKESRVQAFQTLFQLEMKDSD----LTINEAISFINDDNPDL-------DFEFIHWLVSG 51

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
           V D +  +D  IS  L + W+ +RL      ILR    E++     P +V+++E V +  
Sbjct: 52  VKDHEPVLDETISPYL-KDWTIARLLKTDRIILRMATYEILHS-DTPAKVVMNEAVELTK 109

Query: 136 DFFYGDEPKFINAVLDKVSR 155
            F   D  KFIN VL  + +
Sbjct: 110 QFSDDDHYKFINGVLSNIKK 129


>gi|15924514|ref|NP_372048.1| transcription antitermination protein NusB [Staphylococcus aureus
           subsp. aureus Mu50]
 gi|15927105|ref|NP_374638.1| transcription antitermination protein NusB [Staphylococcus aureus
           subsp. aureus N315]
 gi|21283206|ref|NP_646294.1| transcription antitermination protein NusB [Staphylococcus aureus
           subsp. aureus MW2]
 gi|49486361|ref|YP_043582.1| transcription antitermination protein NusB [Staphylococcus aureus
           subsp. aureus MSSA476]
 gi|57650481|ref|YP_186410.1| transcription antitermination protein NusB [Staphylococcus aureus
           subsp. aureus COL]
 gi|88195331|ref|YP_500135.1| transcription antitermination protein NusB [Staphylococcus aureus
           subsp. aureus NCTC 8325]
 gi|148268009|ref|YP_001246952.1| transcription antitermination protein NusB [Staphylococcus aureus
           subsp. aureus JH9]
 gi|150394076|ref|YP_001316751.1| transcription antitermination protein NusB [Staphylococcus aureus
           subsp. aureus JH1]
 gi|151221641|ref|YP_001332463.1| transcription antitermination protein NusB [Staphylococcus aureus
           subsp. aureus str. Newman]
 gi|156979843|ref|YP_001442102.1| transcription antitermination protein NusB [Staphylococcus aureus
           subsp. aureus Mu3]
 gi|221140055|ref|ZP_03564548.1| transcription antitermination protein NusB [Staphylococcus aureus
           subsp. aureus str. JKD6009]
 gi|253732178|ref|ZP_04866343.1| transcription antitermination protein NusB [Staphylococcus aureus
           subsp. aureus USA300_TCH959]
 gi|253733226|ref|ZP_04867391.1| transcription antitermination protein NusB [Staphylococcus aureus
           subsp. aureus TCH130]
 gi|255006311|ref|ZP_05144912.2| transcription antitermination protein NusB [Staphylococcus aureus
           subsp. aureus Mu50-omega]
 gi|257425650|ref|ZP_05602074.1| transcription antitermination protein NusB [Staphylococcus aureus
           subsp. aureus 55/2053]
 gi|257428311|ref|ZP_05604709.1| transcription antitermination protein NusB [Staphylococcus aureus
           subsp. aureus 65-1322]
 gi|257430948|ref|ZP_05607328.1| transcription antitermination protein NusB [Staphylococcus aureus
           subsp. aureus 68-397]
 gi|257433637|ref|ZP_05609995.1| transcription antitermination protein NusB [Staphylococcus aureus
           subsp. aureus E1410]
 gi|257436550|ref|ZP_05612594.1| transcription antitermination factor NusB [Staphylococcus aureus
           subsp. aureus M876]
 gi|257793601|ref|ZP_05642580.1| transcription antitermination factor NusB [Staphylococcus aureus
           A9781]
 gi|258411099|ref|ZP_05681379.1| transcription antitermination protein NusB [Staphylococcus aureus
           A9763]
 gi|258420097|ref|ZP_05683052.1| transcription antitermination factor NusB [Staphylococcus aureus
           A9719]
 gi|258423178|ref|ZP_05686071.1| transcription antitermination factor NusB [Staphylococcus aureus
           A9635]
 gi|258437357|ref|ZP_05689341.1| transcription antitermination protein NusB [Staphylococcus aureus
           A9299]
 gi|258443563|ref|ZP_05691902.1| transcription antitermination protein NusB [Staphylococcus aureus
           A8115]
 gi|258446770|ref|ZP_05694924.1| transcription antitermination protein NusB [Staphylococcus aureus
           A6300]
 gi|258448684|ref|ZP_05696796.1| transcription antitermination protein NusB [Staphylococcus aureus
           A6224]
 gi|258451182|ref|ZP_05699217.1| transcription antitermination protein NusB [Staphylococcus aureus
           A5948]
 gi|258453501|ref|ZP_05701479.1| transcription antitermination protein NusB [Staphylococcus aureus
           A5937]
 gi|262051191|ref|ZP_06023415.1| transcription antitermination protein NusB [Staphylococcus aureus
           930918-3]
 gi|269203154|ref|YP_003282423.1| transcription antitermination protein NusB [Staphylococcus aureus
           subsp. aureus ED98]
 gi|282893026|ref|ZP_06301260.1| transcription antitermination factor NusB [Staphylococcus aureus
           A8117]
 gi|282911163|ref|ZP_06318965.1| transcription antitermination factor NusB [Staphylococcus aureus
           subsp. aureus WBG10049]
 gi|282914332|ref|ZP_06322118.1| N utilization substance protein B [Staphylococcus aureus subsp.
           aureus M899]
 gi|282916795|ref|ZP_06324553.1| transcription antitermination factor NusB [Staphylococcus aureus
           subsp. aureus D139]
 gi|282919301|ref|ZP_06327036.1| transcription antitermination factor NusB [Staphylococcus aureus
           subsp. aureus C427]
 gi|282924626|ref|ZP_06332294.1| transcription antitermination factor NusB [Staphylococcus aureus
           subsp. aureus C101]
 gi|282924773|ref|ZP_06332440.1| transcription antitermination factor NusB [Staphylococcus aureus
           A9765]
 gi|282928996|ref|ZP_06336583.1| transcription antitermination factor NusB [Staphylococcus aureus
           A10102]
 gi|283770601|ref|ZP_06343493.1| N utilization substance protein B [Staphylococcus aureus subsp.
           aureus H19]
 gi|284024584|ref|ZP_06378982.1| transcription antitermination protein NusB [Staphylococcus aureus
           subsp. aureus 132]
 gi|293503407|ref|ZP_06667254.1| transcription antitermination factor NusB [Staphylococcus aureus
           subsp. aureus 58-424]
 gi|293510423|ref|ZP_06669129.1| transcription antitermination factor NusB [Staphylococcus aureus
           subsp. aureus M809]
 gi|293530963|ref|ZP_06671645.1| N utilization substance protein B [Staphylococcus aureus subsp.
           aureus M1015]
 gi|295406647|ref|ZP_06816452.1| transcription antitermination factor NusB [Staphylococcus aureus
           A8819]
 gi|296275119|ref|ZP_06857626.1| transcription antitermination protein NusB [Staphylococcus aureus
           subsp. aureus MR1]
 gi|297207756|ref|ZP_06924191.1| transcription antitermination factor NusB [Staphylococcus aureus
           subsp. aureus ATCC 51811]
 gi|297245770|ref|ZP_06929635.1| transcription antitermination factor NusB [Staphylococcus aureus
           A8796]
 gi|300911837|ref|ZP_07129280.1| transcription antitermination factor NusB [Staphylococcus aureus
           subsp. aureus TCH70]
 gi|304380887|ref|ZP_07363547.1| transcription antitermination factor NusB [Staphylococcus aureus
           subsp. aureus ATCC BAA-39]
 gi|54037923|sp|P65578|NUSB_STAAN RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|54037924|sp|P65579|NUSB_STAAW RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|54041674|sp|P65577|NUSB_STAAM RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|56749194|sp|Q6G941|NUSB_STAAS RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|71153022|sp|Q5HFP7|NUSB_STAAC RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|119390828|sp|Q2FY45|NUSB_STAA8 RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|166215722|sp|A7X2Q3|NUSB_STAA1 RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|172048899|sp|A6QH69|NUSB_STAAE RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|189035909|sp|A6U1Z6|NUSB_STAA2 RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|189035910|sp|A5IT53|NUSB_STAA9 RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|13701323|dbj|BAB42617.1| SA1355 [Staphylococcus aureus subsp. aureus N315]
 gi|14247295|dbj|BAB57686.1| N utilization substance protein B homolog [Staphylococcus aureus
           subsp. aureus Mu50]
 gi|21204646|dbj|BAB95342.1| MW1477 [Staphylococcus aureus subsp. aureus MW2]
 gi|49244804|emb|CAG43254.1| putative N utilization substance protein B [Staphylococcus aureus
           subsp. aureus MSSA476]
 gi|57284667|gb|AAW36761.1| N utilization substance protein B [Staphylococcus aureus subsp.
           aureus COL]
 gi|87202889|gb|ABD30699.1| N utilization substance protein B, putative [Staphylococcus aureus
           subsp. aureus NCTC 8325]
 gi|147741078|gb|ABQ49376.1| NusB antitermination factor [Staphylococcus aureus subsp. aureus
           JH9]
 gi|149946528|gb|ABR52464.1| transcription antitermination factor NusB [Staphylococcus aureus
           subsp. aureus JH1]
 gi|150374441|dbj|BAF67701.1| transcription antitermination protein NusB [Staphylococcus aureus
           subsp. aureus str. Newman]
 gi|156721978|dbj|BAF78395.1| hypothetical protein [Staphylococcus aureus subsp. aureus Mu3]
 gi|253723967|gb|EES92696.1| transcription antitermination protein NusB [Staphylococcus aureus
           subsp. aureus USA300_TCH959]
 gi|253728766|gb|EES97495.1| transcription antitermination protein NusB [Staphylococcus aureus
           subsp. aureus TCH130]
 gi|257271344|gb|EEV03490.1| transcription antitermination protein NusB [Staphylococcus aureus
           subsp. aureus 55/2053]
 gi|257275152|gb|EEV06639.1| transcription antitermination protein NusB [Staphylococcus aureus
           subsp. aureus 65-1322]
 gi|257278378|gb|EEV09014.1| transcription antitermination protein NusB [Staphylococcus aureus
           subsp. aureus 68-397]
 gi|257281730|gb|EEV11867.1| transcription antitermination protein NusB [Staphylococcus aureus
           subsp. aureus E1410]
 gi|257283901|gb|EEV14024.1| transcription antitermination factor NusB [Staphylococcus aureus
           subsp. aureus M876]
 gi|257787573|gb|EEV25913.1| transcription antitermination factor NusB [Staphylococcus aureus
           A9781]
 gi|257840249|gb|EEV64713.1| transcription antitermination protein NusB [Staphylococcus aureus
           A9763]
 gi|257843808|gb|EEV68202.1| transcription antitermination factor NusB [Staphylococcus aureus
           A9719]
 gi|257846628|gb|EEV70649.1| transcription antitermination factor NusB [Staphylococcus aureus
           A9635]
 gi|257848562|gb|EEV72550.1| transcription antitermination protein NusB [Staphylococcus aureus
           A9299]
 gi|257850969|gb|EEV74912.1| transcription antitermination protein NusB [Staphylococcus aureus
           A8115]
 gi|257854345|gb|EEV77294.1| transcription antitermination protein NusB [Staphylococcus aureus
           A6300]
 gi|257857962|gb|EEV80851.1| transcription antitermination protein NusB [Staphylococcus aureus
           A6224]
 gi|257861237|gb|EEV84050.1| transcription antitermination protein NusB [Staphylococcus aureus
           A5948]
 gi|257864232|gb|EEV86982.1| transcription antitermination protein NusB [Staphylococcus aureus
           A5937]
 gi|259160828|gb|EEW45848.1| transcription antitermination protein NusB [Staphylococcus aureus
           930918-3]
 gi|262075444|gb|ACY11417.1| transcription antitermination protein NusB [Staphylococcus aureus
           subsp. aureus ED98]
 gi|269941015|emb|CBI49399.1| putative N utilization substance protein B [Staphylococcus aureus
           subsp. aureus TW20]
 gi|282313461|gb|EFB43856.1| transcription antitermination factor NusB [Staphylococcus aureus
           subsp. aureus C101]
 gi|282317111|gb|EFB47485.1| transcription antitermination factor NusB [Staphylococcus aureus
           subsp. aureus C427]
 gi|282319282|gb|EFB49634.1| transcription antitermination factor NusB [Staphylococcus aureus
           subsp. aureus D139]
 gi|282321513|gb|EFB51838.1| N utilization substance protein B [Staphylococcus aureus subsp.
           aureus M899]
 gi|282324858|gb|EFB55168.1| transcription antitermination factor NusB [Staphylococcus aureus
           subsp. aureus WBG10049]
 gi|282589403|gb|EFB94494.1| transcription antitermination factor NusB [Staphylococcus aureus
           A10102]
 gi|282592780|gb|EFB97786.1| transcription antitermination factor NusB [Staphylococcus aureus
           A9765]
 gi|282764344|gb|EFC04470.1| transcription antitermination factor NusB [Staphylococcus aureus
           A8117]
 gi|283460748|gb|EFC07838.1| N utilization substance protein B [Staphylococcus aureus subsp.
           aureus H19]
 gi|283470803|emb|CAQ50014.1| transcription antitermination factor NusB [Staphylococcus aureus
           subsp. aureus ST398]
 gi|285817207|gb|ADC37694.1| Transcription termination protein NusB [Staphylococcus aureus
           04-02981]
 gi|290920231|gb|EFD97297.1| N utilization substance protein B [Staphylococcus aureus subsp.
           aureus M1015]
 gi|291095073|gb|EFE25338.1| transcription antitermination factor NusB [Staphylococcus aureus
           subsp. aureus 58-424]
 gi|291466787|gb|EFF09307.1| transcription antitermination factor NusB [Staphylococcus aureus
           subsp. aureus M809]
 gi|294968394|gb|EFG44418.1| transcription antitermination factor NusB [Staphylococcus aureus
           A8819]
 gi|296887773|gb|EFH26671.1| transcription antitermination factor NusB [Staphylococcus aureus
           subsp. aureus ATCC 51811]
 gi|297177421|gb|EFH36673.1| transcription antitermination factor NusB [Staphylococcus aureus
           A8796]
 gi|298694807|gb|ADI98029.1| N utilization substance protein B [Staphylococcus aureus subsp.
           aureus ED133]
 gi|300886083|gb|EFK81285.1| transcription antitermination factor NusB [Staphylococcus aureus
           subsp. aureus TCH70]
 gi|302333201|gb|ADL23394.1| putative N utilization substance protein B [Staphylococcus aureus
           subsp. aureus JKD6159]
 gi|302751356|gb|ADL65533.1| putative N utilization substance protein B [Staphylococcus aureus
           subsp. aureus str. JKD6008]
 gi|304340614|gb|EFM06548.1| transcription antitermination factor NusB [Staphylococcus aureus
           subsp. aureus ATCC BAA-39]
 gi|312829914|emb|CBX34756.1| transcription antitermination factor NusB [Staphylococcus aureus
           subsp. aureus ECT-R 2]
 gi|315129802|gb|EFT85792.1| transcription antitermination protein NusB [Staphylococcus aureus
           subsp. aureus CGS03]
 gi|320140590|gb|EFW32444.1| transcription antitermination factor NusB [Staphylococcus aureus
           subsp. aureus MRSA131]
 gi|323440422|gb|EGA98134.1| transcription antitermination protein NusB [Staphylococcus aureus
           O11]
 gi|323443196|gb|EGB00814.1| transcription antitermination protein NusB [Staphylococcus aureus
           O46]
 gi|329314202|gb|AEB88615.1| N utilization substance protein B -like protein [Staphylococcus
           aureus subsp. aureus T0131]
 gi|329727098|gb|EGG63554.1| transcription antitermination factor NusB [Staphylococcus aureus
           subsp. aureus 21172]
 gi|329728323|gb|EGG64760.1| transcription antitermination factor NusB [Staphylococcus aureus
           subsp. aureus 21189]
 gi|329730817|gb|EGG67195.1| transcription antitermination factor NusB [Staphylococcus aureus
           subsp. aureus 21193]
          Length = 129

 Score =  144 bits (364), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 38/140 (27%), Positives = 64/140 (45%), Gaps = 13/140 (9%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           R  +R+ A Q L+Q+++        ++  E   F  D   D+       D E+   ++ G
Sbjct: 3   RKESRVQAFQTLFQLEMKDSD----LTINEAISFIKDDNPDL-------DFEFIHWLVSG 51

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
           V D +  +D  IS  L + W+ +RL      ILR    E++     P +V+++E V +  
Sbjct: 52  VKDHEPVLDETISPYL-KDWTIARLLKTDRIILRMATYEILHS-DTPAKVVMNEAVELTK 109

Query: 136 DFFYGDEPKFINAVLDKVSR 155
            F   D  KFIN VL  + +
Sbjct: 110 QFSDDDHYKFINGVLSNIKK 129


>gi|302392489|ref|YP_003828309.1| NusB antitermination factor [Acetohalobium arabaticum DSM 5501]
 gi|302204566|gb|ADL13244.1| NusB antitermination factor [Acetohalobium arabaticum DSM 5501]
          Length = 138

 Score =  144 bits (364), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 44/149 (29%), Positives = 64/149 (42%), Gaps = 12/149 (8%)

Query: 10  LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF 69
           +   + R  AR  AVQ LYQIDI      + +          + E             + 
Sbjct: 1   MTDRYSRHEARKIAVQTLYQIDINDEGLEKNLEMLTNRIEGLELED-----------TFL 49

Query: 70  RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISE 129
             II G       ID  ++    E W  SR+  +  +ILR  + E++    +P+EV I E
Sbjct: 50  EEIITGTYQNLSEIDKELNES-AEGWKVSRMGKVDRNILRLAIYEILYVDDIPIEVSIDE 108

Query: 130 YVCIAHDFFYGDEPKFINAVLDKVSRKEE 158
            V +A +F     PKFIN VL +V  K+E
Sbjct: 109 AVELAKEFIADKSPKFINGVLGRVVSKQE 137


>gi|224824226|ref|ZP_03697334.1| NusB antitermination factor [Lutiella nitroferrum 2002]
 gi|224603645|gb|EEG09820.1| NusB antitermination factor [Lutiella nitroferrum 2002]
          Length = 148

 Score =  144 bits (364), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 37/145 (25%), Positives = 60/145 (41%), Gaps = 14/145 (9%)

Query: 10  LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF 69
           +K S RR  AR  AVQ +Y+ ++       +I          +  L     ++  D   F
Sbjct: 1   MKTSRRR--AREFAVQGIYEWELNPDRPASLI----------EKHLRENDYFVKADEALF 48

Query: 70  RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISE 129
           R ++ GV+     +   I            +  +  ++L    LEL +    P  VII+E
Sbjct: 49  RTLLFGVLKDAAELSPKIDRYYER--PADEVSPVERAVLLMAALELTQHPETPYPVIINE 106

Query: 130 YVCIAHDFFYGDEPKFINAVLDKVS 154
            + I   F   D  KF+N VLDK++
Sbjct: 107 AIEITKTFGGTDGHKFVNGVLDKLA 131


>gi|73748962|ref|YP_308201.1| N utilization substance protein B [Dehalococcoides sp. CBDB1]
 gi|147669729|ref|YP_001214547.1| NusB antitermination factor [Dehalococcoides sp. BAV1]
 gi|289432959|ref|YP_003462832.1| NusB antitermination factor [Dehalococcoides sp. GT]
 gi|119390765|sp|Q3ZYI9|NUSB_DEHSC RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|189035888|sp|A5FQ51|NUSB_DEHSB RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|73660678|emb|CAI83285.1| N utilization substance protein B [Dehalococcoides sp. CBDB1]
 gi|146270677|gb|ABQ17669.1| NusB antitermination factor [Dehalococcoides sp. BAV1]
 gi|288946679|gb|ADC74376.1| NusB antitermination factor [Dehalococcoides sp. GT]
          Length = 143

 Score =  144 bits (364), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 39/144 (27%), Positives = 68/144 (47%), Gaps = 12/144 (8%)

Query: 12  LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71
           ++  R  AR   +QALY+ D+ G +  +++    T           E+     ++E+   
Sbjct: 1   MTTSRRKAREIVLQALYEQDLAGHNAEDVLKRLLT-----------ENPQTEENVEFIFR 49

Query: 72  IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
           + + V+  K  +D  I    +  W   +L  I  ++LR  + E+I  + VPV+V I+E V
Sbjct: 50  LTNAVVKHKDLLDENIRQFASA-WPVEQLSYIDRNVLRLAIFEIIHENDVPVKVAINEAV 108

Query: 132 CIAHDFFYGDEPKFINAVLDKVSR 155
            +A  F      +FIN VL  VS+
Sbjct: 109 ELAKSFGGNSSARFINGVLSSVSK 132


>gi|134298933|ref|YP_001112429.1| NusB antitermination factor [Desulfotomaculum reducens MI-1]
 gi|172044268|sp|A4J3F1|NUSB_DESRM RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|134051633|gb|ABO49604.1| NusB antitermination factor [Desulfotomaculum reducens MI-1]
          Length = 143

 Score =  144 bits (364), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 31/143 (21%), Positives = 66/143 (46%), Gaps = 12/143 (8%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           R  AR  A+Q L+QID+        +                E      ++E+ R ++ G
Sbjct: 3   RRQARETALQVLFQIDLGKTEPDLAL-----------NNTAEEFGAGPQEIEFARQLVMG 51

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
            ++  + ID +I   ++++W  +R+  +  +I+R  + E+     +P  V ++E + ++ 
Sbjct: 52  TLEHIEEIDAMIGK-VSKEWQLNRMANVDRNIMRLAIFEMNYRADIPKSVSVNEALELSK 110

Query: 136 DFFYGDEPKFINAVLDKVSRKEE 158
            F   D  +FIN +L K+   ++
Sbjct: 111 IFGTPDSVRFINGILGKLLDNKD 133


>gi|217964495|ref|YP_002350173.1| transcription antitermination factor NusB [Listeria monocytogenes
           HCC23]
 gi|254829884|ref|ZP_05234539.1| transcription antitermination protein NusB [Listeria monocytogenes
           10403S]
 gi|254772645|sp|B8DFW9|NUSB_LISMH RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|217333765|gb|ACK39559.1| transcription antitermination factor NusB [Listeria monocytogenes
           HCC23]
 gi|307570941|emb|CAR84120.1| transcription antitermination factor [Listeria monocytogenes L99]
          Length = 128

 Score =  144 bits (364), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 39/144 (27%), Positives = 65/144 (45%), Gaps = 17/144 (11%)

Query: 15  RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74
           +R  AR  A+QAL+QI++   S  + I                +++      ++   ++ 
Sbjct: 2   KRREAREKALQALFQIELNEMSLDQAI----------------KNIMEDEQDDYMEKLVE 45

Query: 75  GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134
           GVM  K  ID +I   L   W   RL  +  S+LR  V E+     VP  V ++E + IA
Sbjct: 46  GVMANKAEIDAIIEPNLD-NWRIDRLSKVDLSLLRLSVYEIKYLDDVPNRVSLNESIEIA 104

Query: 135 HDFFYGDEPKFINAVLDKVSRKEE 158
             +      KFIN VL  ++ +++
Sbjct: 105 KIYSDEKSSKFINGVLANIAPEDK 128


>gi|172056940|ref|YP_001813400.1| NusB antitermination factor [Exiguobacterium sibiricum 255-15]
 gi|171989461|gb|ACB60383.1| NusB antitermination factor [Exiguobacterium sibiricum 255-15]
          Length = 141

 Score =  144 bits (364), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 44/144 (30%), Positives = 69/144 (47%), Gaps = 16/144 (11%)

Query: 15  RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74
           +R +AR  AVQ+L+Q+++   S  E I E+       DT              +   ++ 
Sbjct: 3   KRHMARELAVQSLFQMELSDLSAQEAI-EFAVEGKEYDT--------------FVTRLVE 47

Query: 75  GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134
           GV   K  ID  + + L   WSF R+  I  +ILR  V EL+    +PV V I+E + + 
Sbjct: 48  GVEANKPEIDQKLRAALV-NWSFERIGNIERTILRLAVYELLFEAKIPVRVTINEAIELT 106

Query: 135 HDFFYGDEPKFINAVLDKVSRKEE 158
             F   +  K +N VL KV+++ E
Sbjct: 107 KAFADEEATKIVNGVLGKVAQEVE 130


>gi|225869187|ref|YP_002745135.1| N utilization substance protein B homolog (NusB protein)
           [Streptococcus equi subsp. zooepidemicus]
 gi|259514901|sp|C0MED0|NUSB_STRS7 RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|225702463|emb|CAX00364.1| N utilization substance protein B homolog (NusB protein)
           [Streptococcus equi subsp. zooepidemicus]
          Length = 150

 Score =  144 bits (364), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 39/145 (26%), Positives = 65/145 (44%), Gaps = 8/145 (5%)

Query: 14  HRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLE-WFRVI 72
           H R   R  A QAL+ +++ G             +F  D + +V       +L  +   +
Sbjct: 7   HSRRDLRERAFQALFTMEMGGDFL-------LASQFAYDYDKEVADDKQPSELPVFLLNL 59

Query: 73  IHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVC 132
           ++GVMD K  +D +I   L   WS  RL ++  ++LR G+ E+      P  V ++E + 
Sbjct: 60  VNGVMDHKAELDEVIKKNLKAGWSIERLTVVDKTMLRLGLFEMTLFEETPDRVALNEIIE 119

Query: 133 IAHDFFYGDEPKFINAVLDKVSRKE 157
           IA  +      KFIN +L +    E
Sbjct: 120 IAKKYSDDTSAKFINGLLSQFVSDE 144


>gi|171779279|ref|ZP_02920250.1| hypothetical protein STRINF_01127 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
 gi|171282335|gb|EDT47762.1| hypothetical protein STRINF_01127 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
          Length = 142

 Score =  144 bits (364), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 33/146 (22%), Positives = 58/146 (39%), Gaps = 7/146 (4%)

Query: 11  KLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFR 70
             ++ R   R  A QAL+ ++  G              F    +  VE         +  
Sbjct: 4   NFTNSRRDLRERAFQALFSLEFGGEYLQAAE-------FAYTYDKTVEEDEEVQVPVFLL 56

Query: 71  VIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEY 130
            ++ GV D +  +D  I + L   WS  RL +   ++LR G+ E+      P  V ++E 
Sbjct: 57  NLVKGVCDLQSELDQQIEAHLKSGWSLERLTLTDKALLRLGLYEVKYFEETPGRVAVNEI 116

Query: 131 VCIAHDFFYGDEPKFINAVLDKVSRK 156
           + IA  +      KF+N +L +   +
Sbjct: 117 IEIAKKYSDETSAKFVNGLLSQFVTE 142


>gi|83590364|ref|YP_430373.1| NusB antitermination factor [Moorella thermoacetica ATCC 39073]
 gi|119390785|sp|Q2RIA9|NUSB_MOOTA RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|83573278|gb|ABC19830.1| NusB antitermination factor [Moorella thermoacetica ATCC 39073]
          Length = 145

 Score =  144 bits (363), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 38/142 (26%), Positives = 65/142 (45%), Gaps = 13/142 (9%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           R  AR  A+QAL+ ID+ G S    + +              E       + + R ++ G
Sbjct: 3   RRAARAKALQALFAIDVGGTSPDMALEQVLE-----------EGELPPRAMTFTRELVEG 51

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
            M ++  ID +I       W   RL  +  +ILR  + E+      PV V+I+E + +A 
Sbjct: 52  TMAKRDAIDAIIRKYAV-GWRLERLAAVDRNILRMALYEMQYHRETPVRVVINEAIELAK 110

Query: 136 DFFYGDEPKFINAVLDKVSRKE 157
           +F   +  +F+N +LD  +RK+
Sbjct: 111 NFNNEEAGRFVNGLLDN-ARKD 131


>gi|16800464|ref|NP_470732.1| transcription antitermination protein NusB [Listeria innocua
           Clip11262]
 gi|22095959|sp|Q92BZ5|NUSB_LISIN RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|16413869|emb|CAC96627.1| lin1396 [Listeria innocua Clip11262]
 gi|313619077|gb|EFR90883.1| transcription antitermination factor NusB [Listeria innocua FSL
           S4-378]
 gi|313623883|gb|EFR93998.1| transcription antitermination factor NusB [Listeria innocua FSL
           J1-023]
          Length = 128

 Score =  144 bits (363), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 39/144 (27%), Positives = 66/144 (45%), Gaps = 17/144 (11%)

Query: 15  RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74
           +R  AR  A+QAL+QI++   S  + I                +++      ++   ++ 
Sbjct: 2   KRREAREKALQALFQIELNEMSLDQAI----------------KNIMEDEQDDYMEQLVE 45

Query: 75  GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134
           GVM  K  ID +I   L   W   RL+ +  S+LR  V E+     VP  V ++E + IA
Sbjct: 46  GVMANKAEIDAIIEPNLD-NWRIDRLNKVDLSLLRLSVYEIKYLDDVPNRVSLNESIEIA 104

Query: 135 HDFFYGDEPKFINAVLDKVSRKEE 158
             +      KFIN VL  ++ +++
Sbjct: 105 KIYSDEKSSKFINGVLANIAPEDK 128


>gi|296394716|ref|YP_003659600.1| NusB antitermination factor [Segniliparus rotundus DSM 44985]
 gi|296181863|gb|ADG98769.1| NusB antitermination factor [Segniliparus rotundus DSM 44985]
          Length = 157

 Score =  144 bits (363), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 40/152 (26%), Positives = 64/152 (42%), Gaps = 8/152 (5%)

Query: 11  KLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFR 70
           K +  R  AR  AV+ L++ +       E+ +E             V+ +       +  
Sbjct: 10  KRAGSRRKARRRAVELLFEAEARDLDPAELAAERSAEL--------VKDLSAPQLTPYAL 61

Query: 71  VIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEY 130
           +++ GV D    +D  I   L   W+  RL  +  SILR  V EL+    VP  V + E 
Sbjct: 62  LLLEGVRDNLDVVDQTIIDHLRGGWTLQRLPAVDRSILRIAVWELLFATEVPTAVAVDEA 121

Query: 131 VCIAHDFFYGDEPKFINAVLDKVSRKEEIKRS 162
           + +A +    D P FIN VL ++    +  RS
Sbjct: 122 LELAKELSTDDSPSFINGVLGQLVALADQARS 153


>gi|194335654|ref|YP_002017448.1| NusB antitermination factor [Pelodictyon phaeoclathratiforme BU-1]
 gi|238693383|sp|B4SCZ7|NUSB_PELPB RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|194308131|gb|ACF42831.1| NusB antitermination factor [Pelodictyon phaeoclathratiforme BU-1]
          Length = 171

 Score =  144 bits (363), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 39/153 (25%), Positives = 66/153 (43%), Gaps = 14/153 (9%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           R   R   +QALY I+I             T    AD             +++F +++  
Sbjct: 5   RRQIREKILQALYTIEIRDTDIDSAAGWLLTEEILADPNA----------MKFFNMLLKN 54

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
           + +  + ID  I    T  W  SR+ +I  +I+R  + E++ C  +P +V I+E + IA 
Sbjct: 55  IKEHMEEIDRYIVKH-TFNWDMSRIAIIDKNIIRMALTEILYCEDIPPKVSINEAIEIAK 113

Query: 136 DF-FYGDEPKFINAVLDKVSRKEEIKRSGCVSA 167
            F       KF+N +LD +    ++K  G V  
Sbjct: 114 KFNSTDKSSKFVNGILDAIF--NDLKNEGKVHK 144


>gi|297584560|ref|YP_003700340.1| NusB antitermination factor [Bacillus selenitireducens MLS10]
 gi|297143017|gb|ADH99774.1| NusB antitermination factor [Bacillus selenitireducens MLS10]
          Length = 134

 Score =  144 bits (363), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 39/147 (26%), Positives = 68/147 (46%), Gaps = 16/147 (10%)

Query: 15  RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74
           +R +AR+ A+QALYQ+++ G +  E I          D               +   ++ 
Sbjct: 2   KRRVARIKAIQALYQVEMTGVNPEEAIKTVLEENESMD--------------PYLLTLVE 47

Query: 75  GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134
            V++    +D+ I   +   W  SRL  +  +I+R  + E+I    VPV V I+E + +A
Sbjct: 48  RVLEEMDELDIKIQDSMD-NWQLSRLARVDRAIMRIAMYEMIHSDDVPVSVAINEAIDLA 106

Query: 135 HDF-FYGDEPKFINAVLDKVSRKEEIK 160
             F    +  KF+N VL   ++K E+ 
Sbjct: 107 RGFSGDEESGKFVNGVLSNAAKKLEVN 133


>gi|20807741|ref|NP_622912.1| transcription antitermination protein NusB [Thermoanaerobacter
           tengcongensis MB4]
 gi|22095940|sp|Q8RAD1|NUSB_THETN RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|20516294|gb|AAM24516.1| Transcription termination factor [Thermoanaerobacter tengcongensis
           MB4]
          Length = 140

 Score =  144 bits (363), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 36/148 (24%), Positives = 62/148 (41%), Gaps = 14/148 (9%)

Query: 15  RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74
            R  AR   V+ LYQ D+      +I   +             E        E+    + 
Sbjct: 2   NRTEAREWVVKMLYQYDVSKLPLEKIFENF------------YEEHDPGEQKEYIEGTVR 49

Query: 75  GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134
           G ++  + ID  I    ++ W   R+  I  +ILR  + E++   ++PV + I+E V IA
Sbjct: 50  GTVEHLEEIDREIEKY-SKDWPLYRMPRIDLAILRCSMYEMLYG-NIPVSISINEAVEIA 107

Query: 135 HDFFYGDEPKFINAVLDKVSRKEEIKRS 162
             +   D P FIN +L    R++ ++  
Sbjct: 108 KKYSTDDSPSFINGLLGAFVREKGLEEG 135


>gi|296269370|ref|YP_003652002.1| NusB antitermination factor [Thermobispora bispora DSM 43833]
 gi|296092157|gb|ADG88109.1| NusB antitermination factor [Thermobispora bispora DSM 43833]
          Length = 144

 Score =  144 bits (363), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 43/155 (27%), Positives = 74/155 (47%), Gaps = 17/155 (10%)

Query: 11  KLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFR 70
           K    R  AR  A+  L++ +    S  +++ E          E D         LE+  
Sbjct: 7   KGRQERTQARQRALDILFEAEARAVSPLQVLDERA-------KEADPPV------LEYTV 53

Query: 71  VIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEY 130
            ++ GV+  +  ID LIS+   + W+  R+  +  +ILRAG  E++    VP  V+ISE+
Sbjct: 54  TLVEGVVRHQDRIDELISTY-AQGWTLDRMPAVDRNILRAGTYEMLWSTDVPENVVISEW 112

Query: 131 VCIAHDFFYGDEPKFINAVLDKVSRKEEIKRSGCV 165
           V +A +    + P F+N +L   +R +E+K S  +
Sbjct: 113 VRLAAELSTDESPHFVNGLL---ARFKELKPSLTI 144


>gi|16803399|ref|NP_464884.1| transcription antitermination protein NusB [Listeria monocytogenes
           EGD-e]
 gi|46907585|ref|YP_013974.1| transcription antitermination protein NusB [Listeria monocytogenes
           serotype 4b str. F2365]
 gi|47093746|ref|ZP_00231496.1| N utilization substance protein B [Listeria monocytogenes str. 4b
           H7858]
 gi|47095942|ref|ZP_00233545.1| N utilization substance protein B [Listeria monocytogenes str. 1/2a
           F6854]
 gi|224499938|ref|ZP_03668287.1| transcription antitermination protein NusB [Listeria monocytogenes
           Finland 1988]
 gi|224501698|ref|ZP_03670005.1| transcription antitermination protein NusB [Listeria monocytogenes
           FSL R2-561]
 gi|226223960|ref|YP_002758067.1| transcription termination protein (NusB) [Listeria monocytogenes
           Clip81459]
 gi|254824582|ref|ZP_05229583.1| transcription antitermination protein NusB [Listeria monocytogenes
           FSL J1-194]
 gi|254827620|ref|ZP_05232307.1| transcription antitermination protein NusB [Listeria monocytogenes
           FSL N3-165]
 gi|254852593|ref|ZP_05241941.1| transcription antitermination protein NusB [Listeria monocytogenes
           FSL R2-503]
 gi|254898476|ref|ZP_05258400.1| transcription antitermination protein NusB [Listeria monocytogenes
           J0161]
 gi|254912033|ref|ZP_05262045.1| transcription antitermination protein NusB [Listeria monocytogenes
           J2818]
 gi|254932326|ref|ZP_05265685.1| N utilization substance protein B [Listeria monocytogenes HPB2262]
 gi|254936360|ref|ZP_05268057.1| transcription antitermination protein NusB [Listeria monocytogenes
           F6900]
 gi|254994167|ref|ZP_05276357.1| transcription antitermination protein NusB [Listeria monocytogenes
           FSL J2-064]
 gi|255018100|ref|ZP_05290226.1| transcription antitermination protein NusB [Listeria monocytogenes
           FSL F2-515]
 gi|255029814|ref|ZP_05301765.1| transcription antitermination protein NusB [Listeria monocytogenes
           LO28]
 gi|255520789|ref|ZP_05388026.1| transcription antitermination protein NusB [Listeria monocytogenes
           FSL J1-175]
 gi|284801744|ref|YP_003413609.1| transcription antitermination protein NusB [Listeria monocytogenes
           08-5578]
 gi|284994886|ref|YP_003416654.1| transcription antitermination protein NusB [Listeria monocytogenes
           08-5923]
 gi|300765401|ref|ZP_07075383.1| hypothetical protein LMHG_12558 [Listeria monocytogenes FSL N1-017]
 gi|22095949|sp|Q8Y7C6|NUSB_LISMO RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|67460884|sp|Q71ZW3|NUSB_LISMF RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|259514854|sp|C1L2R5|NUSB_LISMC RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|16410775|emb|CAC99437.1| lmo1359 [Listeria monocytogenes EGD-e]
 gi|46880853|gb|AAT04151.1| N utilization substance protein B [Listeria monocytogenes serotype
           4b str. F2365]
 gi|47015688|gb|EAL06618.1| N utilization substance protein B [Listeria monocytogenes str. 1/2a
           F6854]
 gi|47017867|gb|EAL08650.1| N utilization substance protein B [Listeria monocytogenes str. 4b
           H7858]
 gi|225876422|emb|CAS05131.1| Putative transcription termination protein (NusB) [Listeria
           monocytogenes serotype 4b str. CLIP 80459]
 gi|258599998|gb|EEW13323.1| transcription antitermination protein NusB [Listeria monocytogenes
           FSL N3-165]
 gi|258605906|gb|EEW18514.1| transcription antitermination protein NusB [Listeria monocytogenes
           FSL R2-503]
 gi|258608951|gb|EEW21559.1| transcription antitermination protein NusB [Listeria monocytogenes
           F6900]
 gi|284057306|gb|ADB68247.1| transcription antitermination protein NusB [Listeria monocytogenes
           08-5578]
 gi|284060353|gb|ADB71292.1| transcription antitermination protein NusB [Listeria monocytogenes
           08-5923]
 gi|293583882|gb|EFF95914.1| N utilization substance protein B [Listeria monocytogenes HPB2262]
 gi|293589999|gb|EFF98333.1| transcription antitermination protein NusB [Listeria monocytogenes
           J2818]
 gi|293593820|gb|EFG01581.1| transcription antitermination protein NusB [Listeria monocytogenes
           FSL J1-194]
 gi|300513838|gb|EFK40903.1| hypothetical protein LMHG_12558 [Listeria monocytogenes FSL N1-017]
 gi|328467497|gb|EGF38566.1| transcription antitermination protein NusB [Listeria monocytogenes
           1816]
 gi|328475073|gb|EGF45861.1| transcription antitermination protein NusB [Listeria monocytogenes
           220]
 gi|332311800|gb|EGJ24895.1| N pathway substance protein [Listeria monocytogenes str. Scott A]
          Length = 128

 Score =  144 bits (363), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 39/144 (27%), Positives = 65/144 (45%), Gaps = 17/144 (11%)

Query: 15  RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74
           +R  AR  A+QAL+QI++   S  + I                +++      ++   ++ 
Sbjct: 2   KRREAREKALQALFQIELNEMSLDQAI----------------KNIMEDEQDDYMEKLVE 45

Query: 75  GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134
           GVM  K  ID +I   L   W   RL  +  S+LR  V E+     VP  V ++E + IA
Sbjct: 46  GVMANKAEIDAIIEPNLD-NWRMDRLSKVDLSLLRLSVYEIKYLDDVPNRVSLNESIEIA 104

Query: 135 HDFFYGDEPKFINAVLDKVSRKEE 158
             +      KFIN VL  ++ +++
Sbjct: 105 KIYSDEKSSKFINGVLANIAPEDK 128


>gi|149928254|ref|ZP_01916498.1| transcription antitermination protein NusB [Limnobacter sp. MED105]
 gi|149823060|gb|EDM82301.1| transcription antitermination protein NusB [Limnobacter sp. MED105]
          Length = 162

 Score =  144 bits (363), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 39/174 (22%), Positives = 65/174 (37%), Gaps = 20/174 (11%)

Query: 1   MTIQDNKKDLK----LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELD 56
           M+        K      + R  +R  A+Q LYQ  +      E+           D  + 
Sbjct: 1   MSEASKPDSGKRQGHTRNARRRSRELALQGLYQWFLNPTEVGEV-----------DAHIR 49

Query: 57  VESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELI 116
               +   D E +  ++HG +   + +   I   +   W    L  +  ++L     E+ 
Sbjct: 50  DAPGFDKADREHYESLLHGSVHHLEDLMHQIQPFIDRPW--GELSPVEKAVLVLASHEMN 107

Query: 117 ECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKV---SRKEEIKRSGCVSA 167
               +P  V+I+E V +   F   D  KF+N VLDKV   +R  EIK      +
Sbjct: 108 THAEIPYRVVINEAVELTKTFGGTDAFKFVNGVLDKVAAQARDSEIKAQANSQS 161


>gi|284991570|ref|YP_003410124.1| NusB antitermination factor [Geodermatophilus obscurus DSM 43160]
 gi|284064815|gb|ADB75753.1| NusB antitermination factor [Geodermatophilus obscurus DSM 43160]
          Length = 135

 Score =  144 bits (363), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 39/138 (28%), Positives = 55/138 (39%), Gaps = 14/138 (10%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           R  AR  AV  LY+ D+ G    E++ E                       +    ++ G
Sbjct: 4   RSKARKRAVDVLYEADLRGSDPLELLRERVALA-------------SPPIPDHAVRLVEG 50

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
           V +    +D LI       WS  RL  +  +ILR  V EL+    VP  V+I E V +A 
Sbjct: 51  VAEHAARVDELIDRH-ARGWSIHRLPDVDRAILRMAVFELLWVDDVPDAVVIDEAVELAR 109

Query: 136 DFFYGDEPKFINAVLDKV 153
                D P ++N VL  V
Sbjct: 110 SLSTDDSPAYVNGVLGGV 127


>gi|332799350|ref|YP_004460849.1| NusB antitermination factor [Tepidanaerobacter sp. Re1]
 gi|332697085|gb|AEE91542.1| NusB antitermination factor [Tepidanaerobacter sp. Re1]
          Length = 135

 Score =  144 bits (363), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 39/146 (26%), Positives = 66/146 (45%), Gaps = 13/146 (8%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           R IAR  A + L+ ID+   +  E             +E+ +E +       +    + G
Sbjct: 3   RKIAREQAFKILFAIDVGNNTVEEA------------SEIVIEFLKDENQKSFILNEVRG 50

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
           V+    +ID++I+   ++ WS  R+     +ILR  V ELI    +P+ V I+E V IA 
Sbjct: 51  VLKNLSNIDIIINKY-SDDWSIDRMAATDRNILRLAVYELIYSQDIPISVSINEAVEIAK 109

Query: 136 DFFYGDEPKFINAVLDKVSRKEEIKR 161
            +      KFIN +L  ++     K+
Sbjct: 110 KYGDEHSYKFINGLLGSIAEDHASKQ 135


>gi|253999962|ref|YP_003052025.1| NusB antitermination factor [Methylovorus sp. SIP3-4]
 gi|253986641|gb|ACT51498.1| NusB antitermination factor [Methylovorus sp. SIP3-4]
          Length = 158

 Score =  143 bits (362), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 45/170 (26%), Positives = 73/170 (42%), Gaps = 20/170 (11%)

Query: 1   MTIQDNK----KDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELD 56
           M+  D K    K +K S  R  +R  A++ +Y+  +       I+ E             
Sbjct: 1   MSDTDQKPGDAKPVKASRNRRKSRELALKGIYRNLMNQADFRAILRELAD---------- 50

Query: 57  VESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELI 116
            E  +   D E+ R ++ GV+  ++ +D  I+  +        L  I   IL     ELI
Sbjct: 51  -EPEFDKADQEYLRKLLDGVLAEREELDRRIAVFVDR--PMQELSPIEHGILCLSAYELI 107

Query: 117 ECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRSGCVS 166
              S+P  V I+E V +A  +   D  K++N VLDK++ +    R G VS
Sbjct: 108 FDLSIPYRVAINEGVELAKIYGGTDGHKYVNGVLDKLAAEA---RPGEVS 154


>gi|87161392|ref|YP_494169.1| transcription antitermination protein NusB [Staphylococcus aureus
           subsp. aureus USA300_FPR3757]
 gi|161509753|ref|YP_001575412.1| transcription antitermination protein NusB [Staphylococcus aureus
           subsp. aureus USA300_TCH1516]
 gi|294848555|ref|ZP_06789301.1| transcription antitermination factor NusB [Staphylococcus aureus
           A9754]
 gi|119390827|sp|Q2FGK9|NUSB_STAA3 RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|189035911|sp|A8Z464|NUSB_STAAT RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|87127366|gb|ABD21880.1| transcription antitermination factor NusB [Staphylococcus aureus
           subsp. aureus USA300_FPR3757]
 gi|160368562|gb|ABX29533.1| N utilization substance B [Staphylococcus aureus subsp. aureus
           USA300_TCH1516]
 gi|294824581|gb|EFG41004.1| transcription antitermination factor NusB [Staphylococcus aureus
           A9754]
 gi|315198781|gb|EFU29109.1| transcription antitermination protein NusB [Staphylococcus aureus
           subsp. aureus CGS01]
 gi|320144127|gb|EFW35896.1| transcription antitermination factor NusB [Staphylococcus aureus
           subsp. aureus MRSA177]
          Length = 129

 Score =  143 bits (362), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 37/140 (26%), Positives = 63/140 (45%), Gaps = 13/140 (9%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           R  +R+ A Q L+Q+++        ++  E   F  D   D+       D E+   ++ G
Sbjct: 3   RKESRVQAFQTLFQLEMKDSD----LTINEAISFIKDDNPDL-------DFEFIHWLVSG 51

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
           V   +  +D  IS  L + W+ +RL      ILR    E++     P +V+++E V +  
Sbjct: 52  VKGHEPVLDETISPYL-KDWTIARLLKTDRIILRMATYEILHS-DTPAKVVMNEAVELTK 109

Query: 136 DFFYGDEPKFINAVLDKVSR 155
            F   D  KFIN VL  + +
Sbjct: 110 QFSDDDHYKFINGVLSNIKK 129


>gi|302550131|ref|ZP_07302473.1| transcription antitermination factor NusB [Streptomyces
           viridochromogenes DSM 40736]
 gi|302467749|gb|EFL30842.1| transcription antitermination factor NusB [Streptomyces
           viridochromogenes DSM 40736]
          Length = 144

 Score =  143 bits (362), Expect = 7e-33,   Method: Composition-based stats.
 Identities = 34/138 (24%), Positives = 63/138 (45%), Gaps = 9/138 (6%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           R  AR  A Q L++ D  G     +++++         +  V         E+   ++ G
Sbjct: 4   RNTARKRAFQILFEGDQRGAEALTVLADWVRLSRADTRQPPVS--------EYTMELVEG 55

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
                + ID LI+   +  W+  R+ ++  +ILR G  ELI   + P  V++ E V +A 
Sbjct: 56  YAKHAKRIDELIAQY-SVGWTLDRMPVVDRNILRLGAYELIWVDATPDAVVLDEMVQLAK 114

Query: 136 DFFYGDEPKFINAVLDKV 153
           +F   + P F+N +L ++
Sbjct: 115 EFSTDESPSFVNGLLGRL 132


>gi|312866399|ref|ZP_07726617.1| transcription antitermination factor NusB [Streptococcus downei
           F0415]
 gi|311098093|gb|EFQ56319.1| transcription antitermination factor NusB [Streptococcus downei
           F0415]
          Length = 139

 Score =  143 bits (362), Expect = 7e-33,   Method: Composition-based stats.
 Identities = 34/143 (23%), Positives = 58/143 (40%), Gaps = 6/143 (4%)

Query: 12  LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71
           ++  R   R  A QA++ ++       +         F    +   +         +   
Sbjct: 1   MTESRHNLRERAFQAIFSLEFGQADFLQAA------NFAYSYDKQGQEGEELEVPAFLLN 54

Query: 72  IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
           ++ G +D    ID LIS  L EKWS  RL +   S+LR G+ E+      P +V ++E +
Sbjct: 55  LVKGTVDNLTEIDGLISENLKEKWSLERLTLTDRSLLRLGLYEIKYHEETPAKVALNEVI 114

Query: 132 CIAHDFFYGDEPKFINAVLDKVS 154
            +   +      KFIN +L K  
Sbjct: 115 ELTKAYSDQTSAKFINGILTKFV 137


>gi|225869862|ref|YP_002745809.1| N utilization substance protein B homolog (NusB protein)
           [Streptococcus equi subsp. equi 4047]
 gi|254772656|sp|C0MBK2|NUSB_STRE4 RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|225699266|emb|CAW92587.1| N utilization substance protein B homolog (NusB protein)
           [Streptococcus equi subsp. equi 4047]
          Length = 150

 Score =  143 bits (362), Expect = 7e-33,   Method: Composition-based stats.
 Identities = 39/144 (27%), Positives = 64/144 (44%), Gaps = 6/144 (4%)

Query: 14  HRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVII 73
           H R   R  A QAL+ +++ G         Y+  +  AD +   E         +   ++
Sbjct: 7   HSRRDLRERAFQALFAMEMGGDFLPASQFAYDYDKEAADDKQPSELPV------FLLNLV 60

Query: 74  HGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCI 133
           +GVMD K  +D +I   L   WS  RL ++  ++LR G+ E+      P  V ++E + I
Sbjct: 61  NGVMDHKAELDEVIKKNLKTSWSIERLTVVDKTMLRLGLFEMTLFEETPDRVALNEIIEI 120

Query: 134 AHDFFYGDEPKFINAVLDKVSRKE 157
           A  +      KFIN +L +    E
Sbjct: 121 AKKYSDDTSAKFINGLLSQFVSDE 144


>gi|51244954|ref|YP_064838.1| transcription termination factor (NusB) [Desulfotalea psychrophila
           LSv54]
 gi|81642559|sp|Q6AP93|NUSB_DESPS RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|50875991|emb|CAG35831.1| probable transcription termination factor (NusB) [Desulfotalea
           psychrophila LSv54]
          Length = 141

 Score =  143 bits (362), Expect = 8e-33,   Method: Composition-based stats.
 Identities = 44/141 (31%), Positives = 61/141 (43%), Gaps = 12/141 (8%)

Query: 16  RGIARLAAVQALYQIDI---IGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVI 72
           R  AR AA+Q LYQ D       +  E+   +E +                    +   +
Sbjct: 4   RRFAREAALQFLYQDDFIPESADTPGELKERFEQFCEIYQVN--------KKGRTYALNL 55

Query: 73  IHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVC 132
           I GV+  ++ ID LI       W  SR+     ++LR    E+  C  VP EV I+E V 
Sbjct: 56  IAGVLADQEAIDRLIEEAAV-NWRMSRISATDRNLLRVATFEINFCDDVPAEVAINEAVE 114

Query: 133 IAHDFFYGDEPKFINAVLDKV 153
           IA  F   + PKF+N VLD V
Sbjct: 115 IAKRFCGDESPKFVNGVLDAV 135


>gi|239905097|ref|YP_002951836.1| N utilization substance protein B homolog [Desulfovibrio magneticus
           RS-1]
 gi|239794961|dbj|BAH73950.1| N utilization substance protein B homolog [Desulfovibrio magneticus
           RS-1]
          Length = 159

 Score =  143 bits (362), Expect = 8e-33,   Method: Composition-based stats.
 Identities = 40/163 (24%), Positives = 69/163 (42%), Gaps = 9/163 (5%)

Query: 1   MTIQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESV 60
           MT  D+KK +     R  AR  A + LY     G S      E    R       DV   
Sbjct: 1   MTESDDKKPI---VSRRKARKQAFEFLY-----GLSFEPAADERSLLRLFKRCPHDVAEG 52

Query: 61  YLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHS 120
                 E+   ++ GV   ++ ID  I    ++ W  SR+  +  +ILR  V E++    
Sbjct: 53  EDDAGHEFAWELVLGVWRNQRDIDATIVRF-SKNWKISRIAKVELTILRLAVHEILSRPD 111

Query: 121 VPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRSG 163
           +P+ V ++E + ++  +   +   FIN +LD +++  +    G
Sbjct: 112 IPLRVSLNEAIELSKRYGDENSRNFINGILDALAKAVDSGEFG 154


>gi|237654565|ref|YP_002890879.1| transcription antitermination protein NusB [Thauera sp. MZ1T]
 gi|237625812|gb|ACR02502.1| NusB antitermination factor [Thauera sp. MZ1T]
          Length = 166

 Score =  143 bits (362), Expect = 8e-33,   Method: Composition-based stats.
 Identities = 42/155 (27%), Positives = 67/155 (43%), Gaps = 17/155 (10%)

Query: 11  KLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFR 70
           K++ RR  AR  A+Q +YQ  + G + T +    E+     D           +D E F 
Sbjct: 21  KMARRR--ARELALQGVYQWLLSGNNATTVQRHLESETENLD----------KIDRELFV 68

Query: 71  VIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEY 130
            ++ G       +       L+     + L  I  +IL  G  EL      P  V+I+E 
Sbjct: 69  SLLRGATGAADELRGCFEPLLSR--PVAELSPIEHAILLLGTHELRHNLDTPYRVVINEA 126

Query: 131 VCIAHDFFYGDEPKFINAVLDKVS---RKEEIKRS 162
           + +A  +   D  KF+N VLDK+S   R EE++ +
Sbjct: 127 IELAKGYGGTDGHKFVNGVLDKLSTRLRPEEVEAA 161


>gi|50954771|ref|YP_062059.1| transcription termination factor [Leifsonia xyli subsp. xyli str.
           CTCB07]
 gi|71648799|sp|Q6AF91|NUSB_LEIXX RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|50951253|gb|AAT88954.1| transcription termination factor [Leifsonia xyli subsp. xyli str.
           CTCB07]
          Length = 144

 Score =  143 bits (361), Expect = 8e-33,   Method: Composition-based stats.
 Identities = 41/150 (27%), Positives = 65/150 (43%), Gaps = 11/150 (7%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           R  AR  A+  L+  D+   S          +    + E             + R I+ G
Sbjct: 4   RTKARKRALDLLFSADVRQISL--------AHALAVEAERAANEPAREASWLYAREIVDG 55

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
           V+D ++ ID  I +   + W+ +R+  +  +ILR GV EL+    VP  V ISE V  A 
Sbjct: 56  VIDNQEEIDEQIETY-AQGWTLARMPAVDRAILRIGVWELLFNDQVPDGVAISEAVEAAT 114

Query: 136 DFFYGDEPKFINAVLDKVSRKEEIKRSGCV 165
                D   F+N +L K+++ +   R G V
Sbjct: 115 VLSTDDSAGFVNGLLAKIAQNK--PRDGEV 142


>gi|298245582|ref|ZP_06969388.1| NusB antitermination factor [Ktedonobacter racemifer DSM 44963]
 gi|297553063|gb|EFH86928.1| NusB antitermination factor [Ktedonobacter racemifer DSM 44963]
          Length = 147

 Score =  143 bits (361), Expect = 8e-33,   Method: Composition-based stats.
 Identities = 35/147 (23%), Positives = 65/147 (44%), Gaps = 12/147 (8%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           R  AR+ A+Q LY+ D++     EI+  +   R                 +E+ + +  G
Sbjct: 5   RRQARMVALQTLYEYDMVHHDPLEILQRHAEER-----------NLHAKVVEYAQELAEG 53

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
           V      ID  I S    +W   ++  +  +ILR  + E++  ++VP +  I+E V +A 
Sbjct: 54  VCKHLADIDAHIQSA-AREWPLQQMARVDKNILRLAIYEILFNNTVPAKAAINEAVELAK 112

Query: 136 DFFYGDEPKFINAVLDKVSRKEEIKRS 162
            F      +FIN VL  +  + + + +
Sbjct: 113 LFGSDTSSRFINGVLGTIFNRAQQQPT 139


>gi|242373824|ref|ZP_04819398.1| transcription antitermination protein NusB [Staphylococcus
           epidermidis M23864:W1]
 gi|242348378|gb|EES39980.1| transcription antitermination protein NusB [Staphylococcus
           epidermidis M23864:W1]
          Length = 128

 Score =  143 bits (361), Expect = 8e-33,   Method: Composition-based stats.
 Identities = 39/138 (28%), Positives = 60/138 (43%), Gaps = 13/138 (9%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           R  +R+ A Q L+Q+++     T      E   F  D        +  +D ++   ++ G
Sbjct: 3   RKESRIQAFQTLFQLEMKDTDLTIT----EAINFIKD-------DHPELDFDFIHWLVTG 51

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
           V D +  +D  I   L + WS  RL      ILR    E++     P +VII+E V +  
Sbjct: 52  VKDHESVLDEKIKPHL-KDWSIERLLKSDRIILRMATFEMLHS-DTPEKVIINEAVELTK 109

Query: 136 DFFYGDEPKFINAVLDKV 153
            F   D  KFIN VL  +
Sbjct: 110 QFSDDDHYKFINGVLSNI 127


>gi|264679471|ref|YP_003279378.1| NusB antitermination factor [Comamonas testosteroni CNB-2]
 gi|299530553|ref|ZP_07043973.1| NusB antitermination factor [Comamonas testosteroni S44]
 gi|262209984|gb|ACY34082.1| NusB antitermination factor [Comamonas testosteroni CNB-2]
 gi|298721529|gb|EFI62466.1| NusB antitermination factor [Comamonas testosteroni S44]
          Length = 178

 Score =  143 bits (361), Expect = 9e-33,   Method: Composition-based stats.
 Identities = 38/159 (23%), Positives = 72/159 (45%), Gaps = 14/159 (8%)

Query: 1   MTIQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESV 60
           +T    +K    S+ R  AR  A+Q LYQ  +   +  +I       RF  D      + 
Sbjct: 21  LTSTGARKAGSKSN-RSRAREFALQGLYQHIVGRNAVLDI------DRFTRDL-----AG 68

Query: 61  YLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHS 120
           +   D+  +  ++ G ++ +  +D LI+  L      + +  I  + +  GV E   C  
Sbjct: 69  FHKADVVHYDALLRGCVENEAALDALITPKLDRG--LTEISPIEHACMWIGVYEFQNCPD 126

Query: 121 VPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEI 159
           VP  V+++E + +A +F   D  K++NAVL+ ++ +   
Sbjct: 127 VPWRVVLNECIELAKEFGGTDGHKYVNAVLNGLAPELRA 165


>gi|227517900|ref|ZP_03947949.1| transcription antitermination protein NusB [Enterococcus faecalis
           TX0104]
 gi|227555087|ref|ZP_03985134.1| transcription antitermination protein NusB [Enterococcus faecalis
           HH22]
 gi|229546824|ref|ZP_04435549.1| transcription antitermination protein NusB [Enterococcus faecalis
           TX1322]
 gi|229548918|ref|ZP_04437643.1| transcription antitermination protein NusB [Enterococcus faecalis
           ATCC 29200]
 gi|293382527|ref|ZP_06628461.1| transcription antitermination factor NusB [Enterococcus faecalis
           R712]
 gi|293387873|ref|ZP_06632412.1| transcription antitermination factor NusB [Enterococcus faecalis
           S613]
 gi|307268058|ref|ZP_07549446.1| transcription antitermination factor NusB [Enterococcus faecalis
           TX4248]
 gi|307271988|ref|ZP_07553255.1| transcription antitermination factor NusB [Enterococcus faecalis
           TX0855]
 gi|307275459|ref|ZP_07556601.1| transcription antitermination factor NusB [Enterococcus faecalis
           TX2134]
 gi|307278973|ref|ZP_07560032.1| transcription antitermination factor NusB [Enterococcus faecalis
           TX0860]
 gi|307289420|ref|ZP_07569374.1| transcription antitermination factor NusB [Enterococcus faecalis
           TX0109]
 gi|307290060|ref|ZP_07569984.1| transcription antitermination factor NusB [Enterococcus faecalis
           TX0411]
 gi|312900448|ref|ZP_07759755.1| transcription antitermination factor NusB [Enterococcus faecalis
           TX0470]
 gi|312904540|ref|ZP_07763698.1| transcription antitermination factor NusB [Enterococcus faecalis
           TX0635]
 gi|312906870|ref|ZP_07765867.1| transcription antitermination factor NusB [Enterococcus faecalis
           DAPTO 512]
 gi|312952750|ref|ZP_07771612.1| transcription antitermination factor NusB [Enterococcus faecalis
           TX0102]
 gi|312978875|ref|ZP_07790601.1| transcription antitermination factor NusB [Enterococcus faecalis
           DAPTO 516]
 gi|227074654|gb|EEI12617.1| transcription antitermination protein NusB [Enterococcus faecalis
           TX0104]
 gi|227175755|gb|EEI56727.1| transcription antitermination protein NusB [Enterococcus faecalis
           HH22]
 gi|229305939|gb|EEN71935.1| transcription antitermination protein NusB [Enterococcus faecalis
           ATCC 29200]
 gi|229307989|gb|EEN73976.1| transcription antitermination protein NusB [Enterococcus faecalis
           TX1322]
 gi|291080075|gb|EFE17439.1| transcription antitermination factor NusB [Enterococcus faecalis
           R712]
 gi|291082720|gb|EFE19683.1| transcription antitermination factor NusB [Enterococcus faecalis
           S613]
 gi|306498902|gb|EFM68396.1| transcription antitermination factor NusB [Enterococcus faecalis
           TX0411]
 gi|306499675|gb|EFM69038.1| transcription antitermination factor NusB [Enterococcus faecalis
           TX0109]
 gi|306504360|gb|EFM73571.1| transcription antitermination factor NusB [Enterococcus faecalis
           TX0860]
 gi|306507847|gb|EFM76975.1| transcription antitermination factor NusB [Enterococcus faecalis
           TX2134]
 gi|306511335|gb|EFM80338.1| transcription antitermination factor NusB [Enterococcus faecalis
           TX0855]
 gi|306515699|gb|EFM84226.1| transcription antitermination factor NusB [Enterococcus faecalis
           TX4248]
 gi|310627124|gb|EFQ10407.1| transcription antitermination factor NusB [Enterococcus faecalis
           DAPTO 512]
 gi|310629266|gb|EFQ12549.1| transcription antitermination factor NusB [Enterococcus faecalis
           TX0102]
 gi|310632053|gb|EFQ15336.1| transcription antitermination factor NusB [Enterococcus faecalis
           TX0635]
 gi|311288312|gb|EFQ66868.1| transcription antitermination factor NusB [Enterococcus faecalis
           DAPTO 516]
 gi|311292424|gb|EFQ70980.1| transcription antitermination factor NusB [Enterococcus faecalis
           TX0470]
 gi|315026954|gb|EFT38886.1| transcription antitermination factor NusB [Enterococcus faecalis
           TX2137]
 gi|315029667|gb|EFT41599.1| transcription antitermination factor NusB [Enterococcus faecalis
           TX4000]
 gi|315034207|gb|EFT46139.1| transcription antitermination factor NusB [Enterococcus faecalis
           TX0027]
 gi|315144361|gb|EFT88377.1| transcription antitermination factor NusB [Enterococcus faecalis
           TX2141]
 gi|315147929|gb|EFT91945.1| transcription antitermination factor NusB [Enterococcus faecalis
           TX4244]
 gi|315149499|gb|EFT93515.1| transcription antitermination factor NusB [Enterococcus faecalis
           TX0012]
 gi|315153054|gb|EFT97070.1| transcription antitermination factor NusB [Enterococcus faecalis
           TX0031]
 gi|315156826|gb|EFU00843.1| transcription antitermination factor NusB [Enterococcus faecalis
           TX0043]
 gi|315157613|gb|EFU01630.1| transcription antitermination factor NusB [Enterococcus faecalis
           TX0312]
 gi|315162959|gb|EFU06976.1| transcription antitermination factor NusB [Enterococcus faecalis
           TX0645]
 gi|315165157|gb|EFU09174.1| transcription antitermination factor NusB [Enterococcus faecalis
           TX1302]
 gi|315168057|gb|EFU12074.1| transcription antitermination factor NusB [Enterococcus faecalis
           TX1341]
 gi|315171915|gb|EFU15932.1| transcription antitermination factor NusB [Enterococcus faecalis
           TX1342]
 gi|315173308|gb|EFU17325.1| transcription antitermination factor NusB [Enterococcus faecalis
           TX1346]
 gi|315574278|gb|EFU86469.1| transcription antitermination factor NusB [Enterococcus faecalis
           TX0309B]
 gi|315577406|gb|EFU89597.1| transcription antitermination factor NusB [Enterococcus faecalis
           TX0630]
 gi|315581567|gb|EFU93758.1| transcription antitermination factor NusB [Enterococcus faecalis
           TX0309A]
 gi|327534564|gb|AEA93398.1| transcription antitermination factor NusB [Enterococcus faecalis
           OG1RF]
          Length = 156

 Score =  143 bits (361), Expect = 9e-33,   Method: Composition-based stats.
 Identities = 40/158 (25%), Positives = 70/158 (44%), Gaps = 3/158 (1%)

Query: 3   IQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYL 62
           ++  K+  K    R   R  A+QAL+ +D     T +   +   Y    D    V     
Sbjct: 1   MKMEKRMSKTELTRHEIREKALQALFPLDFNADLTKQ---DAIDYALAYDNREIVSEDGE 57

Query: 63  HVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVP 122
            +   +  +++ GV  RK  +D +I++ L   WS  RL  I   ILR  + E++    VP
Sbjct: 58  DLVPTYLDLLVGGVCSRKAELDEVITNHLGNNWSMQRLAKIDIVILRLAIFEMLYVSDVP 117

Query: 123 VEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIK 160
             V ++E V ++  +      KF+N VL  V ++ + +
Sbjct: 118 NIVALNEAVELSKKYSDDRSRKFVNGVLSNVMKEIDSE 155


>gi|239816087|ref|YP_002944997.1| NusB antitermination factor [Variovorax paradoxus S110]
 gi|259514920|sp|C5CPZ2|NUSB_VARPS RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|239802664|gb|ACS19731.1| NusB antitermination factor [Variovorax paradoxus S110]
          Length = 181

 Score =  143 bits (361), Expect = 9e-33,   Method: Composition-based stats.
 Identities = 44/170 (25%), Positives = 75/170 (44%), Gaps = 17/170 (10%)

Query: 1   MTIQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESV 60
           +T    +K    S+ R  AR  A+QALYQ  +     TEI           D      + 
Sbjct: 23  LTSTGARKASAKSN-RSRAREFALQALYQHLVGRNDPTEI-----------DHFTRDLAG 70

Query: 61  YLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHS 120
           +   D   +  ++HG ++  + +D LI   L  K  F  +  I  +++  GV E   C  
Sbjct: 71  FHKADAAHYDALLHGSIEGAEQLDALIRPLLDRK--FEEISPIEHAVMWIGVYEFQHCLD 128

Query: 121 VPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVS---RKEEIKRSGCVSA 167
           VP  V+++E + +A +F   D  K++NAVL+ ++   R  E++       
Sbjct: 129 VPWRVVLNECIELAKEFGGTDGHKYVNAVLNGLAPQLRAAEVEADRASGK 178


>gi|187927756|ref|YP_001898243.1| transcription antitermination protein NusB [Ralstonia pickettii
           12J]
 gi|238691779|sp|B2U7E9|NUSB_RALPJ RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|187724646|gb|ACD25811.1| NusB antitermination factor [Ralstonia pickettii 12J]
          Length = 155

 Score =  143 bits (361), Expect = 9e-33,   Method: Composition-based stats.
 Identities = 32/144 (22%), Positives = 58/144 (40%), Gaps = 13/144 (9%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           R  AR  A+Q LYQ  +       + +            L     +   D   F  ++HG
Sbjct: 18  RRRARELALQGLYQWLLNRNDPGVVEA-----------HLQDAQGFNKADRAHFDALLHG 66

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
            +  +  +    +  L      + L  +  + L  G  EL+ C  +P +V+I+E V +  
Sbjct: 67  AIREETTLTEAFTPYLDR--PVAELSPVERAALLVGAYELVHCVDIPYKVVINEAVELTK 124

Query: 136 DFFYGDEPKFINAVLDKVSRKEEI 159
            F   +  K++N VLDK++ +   
Sbjct: 125 TFGGVEGYKYVNGVLDKLATQVRA 148


>gi|315282224|ref|ZP_07870678.1| transcription antitermination factor NusB [Listeria marthii FSL
           S4-120]
 gi|313614126|gb|EFR87816.1| transcription antitermination factor NusB [Listeria marthii FSL
           S4-120]
          Length = 128

 Score =  143 bits (361), Expect = 9e-33,   Method: Composition-based stats.
 Identities = 39/144 (27%), Positives = 65/144 (45%), Gaps = 17/144 (11%)

Query: 15  RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74
           +R  AR  A+QAL+QI++   S  + I                +++      ++   ++ 
Sbjct: 2   KRREAREKALQALFQIELNEMSLDQAI----------------KNIMEDEQDDYMEKLVE 45

Query: 75  GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134
           GVM  K  ID +I   L   W   RL  +  S+LR  V E+     VP  V ++E + IA
Sbjct: 46  GVMANKAEIDAIIEPNLD-NWRMDRLSKVDLSLLRVSVYEIKYLDDVPNRVSLNESIEIA 104

Query: 135 HDFFYGDEPKFINAVLDKVSRKEE 158
             +      KFIN VL  ++ +++
Sbjct: 105 KIYSDEKSSKFINGVLANIAPEDK 128


>gi|315031736|gb|EFT43668.1| transcription antitermination factor NusB [Enterococcus faecalis
           TX0017]
          Length = 156

 Score =  143 bits (361), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 40/158 (25%), Positives = 70/158 (44%), Gaps = 3/158 (1%)

Query: 3   IQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYL 62
           ++  K+  K    R   R  A+QAL+ +D     T +   +   Y    D    V     
Sbjct: 1   MKMEKRMSKTELTRHEIREKALQALFPLDFNADLTKQ---DAIDYALAYDNREIVSEDSE 57

Query: 63  HVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVP 122
            +   +  +++ GV  RK  +D +I++ L   WS  RL  I   ILR  + E++    VP
Sbjct: 58  DLVPTYLDLLVGGVCSRKAELDEVITNHLGNNWSMQRLAKIDIVILRLAIFEMLYVSDVP 117

Query: 123 VEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIK 160
             V ++E V ++  +      KF+N VL  V ++ + +
Sbjct: 118 NIVALNEAVELSKKYSDDRSRKFVNGVLSNVMKEIDSE 155


>gi|210633860|ref|ZP_03297875.1| hypothetical protein COLSTE_01792 [Collinsella stercoris DSM 13279]
 gi|210159029|gb|EEA90000.1| hypothetical protein COLSTE_01792 [Collinsella stercoris DSM 13279]
          Length = 216

 Score =  143 bits (361), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 38/154 (24%), Positives = 69/154 (44%), Gaps = 16/154 (10%)

Query: 9   DLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEW 68
            LK++  R +AR  A+Q L+Q ++ G S  ++++   T       +             +
Sbjct: 3   SLKVNRGRTLARSQALQILFQAEVRGESVGDVLAGDFTLSKGPLAD-------------Y 49

Query: 69  FRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIEC--HSVPVEVI 126
              I  GV   ++ ID  +   ++  WS  R+     ++LRA V EL      ++   V+
Sbjct: 50  AIQIARGVDANRERIDSAL-RAVSANWSLERMPGADRNLLRAAVYELYFQVADTLDAAVV 108

Query: 127 ISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIK 160
           I+E V IA  +   D   F+N VL ++ R+  + 
Sbjct: 109 INEAVEIAKAYGTDDSAGFVNGVLGRIVRERHLP 142


>gi|229823019|ref|ZP_04449089.1| hypothetical protein GCWU000282_00312 [Catonella morbi ATCC 51271]
 gi|229787832|gb|EEP23946.1| hypothetical protein GCWU000282_00312 [Catonella morbi ATCC 51271]
          Length = 154

 Score =  142 bits (360), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 41/150 (27%), Positives = 67/150 (44%), Gaps = 8/150 (5%)

Query: 11  KLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFR 70
           K+S+ R   R  AVQ ++Q+          +S  +   F  +   D E+ +   D  +  
Sbjct: 10  KMSN-RHQVREKAVQTIFQL----IRPQVPVSLDQACAFALEAGNDPEAGFEGSD-AYLD 63

Query: 71  VIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIE--CHSVPVEVIIS 128
            ++ GV    + +D  IS  L E W+  RL  I  +ILR    EL+      VP +V ++
Sbjct: 64  RLVQGVNQTAEELDQRISHYLAEDWTLDRLARIDLAILRVAFYELLYVSEDEVPSKVAVN 123

Query: 129 EYVCIAHDFFYGDEPKFINAVLDKVSRKEE 158
           E V +A  F      +FIN VL  + +  +
Sbjct: 124 EAVELAKTFSDDKSKQFINGVLAGLLKDLK 153


>gi|71911358|ref|YP_282908.1| transcription antitermination protein NusB [Streptococcus pyogenes
           MGAS5005]
 gi|71854140|gb|AAZ52163.1| N utilization substance protein B [Streptococcus pyogenes MGAS5005]
          Length = 150

 Score =  142 bits (360), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 35/139 (25%), Positives = 68/139 (48%), Gaps = 6/139 (4%)

Query: 14  HRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVII 73
           + R   R  A QAL+ I++      E+++    + +  D     ++  L + + +   ++
Sbjct: 7   NSRRDLRERAFQALFNIEMG----AELLAA-SQFAYGYDKVTGEDAQVLELPI-FLLSLV 60

Query: 74  HGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCI 133
            GV + K+ +D LIS+ L + WS  RL +   ++LR G+ E+      P  V ++E + +
Sbjct: 61  TGVNNHKEELDNLISTHLKKGWSLERLTLTDKTLLRLGLFEIKYFDETPDRVALNEIIEV 120

Query: 134 AHDFFYGDEPKFINAVLDK 152
           A  +      KFIN +L +
Sbjct: 121 AKKYSDETSAKFINGLLSQ 139


>gi|49483774|ref|YP_040998.1| transcription antitermination protein NusB [Staphylococcus aureus
           subsp. aureus MRSA252]
 gi|282904107|ref|ZP_06311995.1| transcription antitermination factor NusB [Staphylococcus aureus
           subsp. aureus C160]
 gi|282905934|ref|ZP_06313789.1| transcription antitermination factor NusB [Staphylococcus aureus
           subsp. aureus Btn1260]
 gi|282908844|ref|ZP_06316662.1| transcription antitermination factor NusB [Staphylococcus aureus
           subsp. aureus WW2703/97]
 gi|283958289|ref|ZP_06375740.1| transcription antitermination factor NusB [Staphylococcus aureus
           subsp. aureus A017934/97]
 gi|295428103|ref|ZP_06820735.1| transcription antitermination factor NusB [Staphylococcus aureus
           subsp. aureus EMRSA16]
 gi|297590931|ref|ZP_06949569.1| transcription antitermination factor NusB [Staphylococcus aureus
           subsp. aureus MN8]
 gi|56749229|sp|Q6GGH4|NUSB_STAAR RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|49241903|emb|CAG40597.1| putative N utilization substance protein B [Staphylococcus aureus
           subsp. aureus MRSA252]
 gi|282327108|gb|EFB57403.1| transcription antitermination factor NusB [Staphylococcus aureus
           subsp. aureus WW2703/97]
 gi|282331226|gb|EFB60740.1| transcription antitermination factor NusB [Staphylococcus aureus
           subsp. aureus Btn1260]
 gi|282595725|gb|EFC00689.1| transcription antitermination factor NusB [Staphylococcus aureus
           subsp. aureus C160]
 gi|283790438|gb|EFC29255.1| transcription antitermination factor NusB [Staphylococcus aureus
           subsp. aureus A017934/97]
 gi|295128461|gb|EFG58095.1| transcription antitermination factor NusB [Staphylococcus aureus
           subsp. aureus EMRSA16]
 gi|297575817|gb|EFH94533.1| transcription antitermination factor NusB [Staphylococcus aureus
           subsp. aureus MN8]
 gi|315195426|gb|EFU25813.1| transcription antitermination protein NusB [Staphylococcus aureus
           subsp. aureus CGS00]
          Length = 129

 Score =  142 bits (360), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 38/140 (27%), Positives = 64/140 (45%), Gaps = 13/140 (9%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           R  +R+ A Q L+Q+++        ++  E   F  D   D+       D E+   ++ G
Sbjct: 3   RKESRVQAFQTLFQLEMKDSD----LTINEAISFIKDDNPDL-------DFEFIHWLVSG 51

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
           V D +  +D  IS  L + W+ +RL      ILR    E++     P +V+++E V +  
Sbjct: 52  VKDHEPVLDETISPNL-KDWTIARLLKTDRIILRMATYEILHS-DTPAKVVMNEAVELTK 109

Query: 136 DFFYGDEPKFINAVLDKVSR 155
            F   D  KFIN VL  + +
Sbjct: 110 QFSDDDHYKFINGVLSNIKK 129


>gi|121997687|ref|YP_001002474.1| NusB antitermination factor [Halorhodospira halophila SL1]
 gi|166215692|sp|A1WVG0|NUSB_HALHL RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|121589092|gb|ABM61672.1| NusB antitermination factor [Halorhodospira halophila SL1]
          Length = 155

 Score =  142 bits (360), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 47/139 (33%), Positives = 66/139 (47%), Gaps = 14/139 (10%)

Query: 15  RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74
           RR  AR   VQALYQ  + G S  +I  ++                   +D+ +FR +I+
Sbjct: 9   RRSRARSKLVQALYQYAVTGASAEDIERQFLAAGLG------------DIDVAYFRELIY 56

Query: 75  GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134
           GV DR   +D  +S+ L       +LD +  SILR G  EL E   VP  V+I E V +A
Sbjct: 57  GVTDRAAELDEQLSALLDR--PLVQLDPVERSILRLGAFELSERLEVPYRVVIDESVELA 114

Query: 135 HDFFYGDEPKFINAVLDKV 153
             F      ++IN VLD+ 
Sbjct: 115 RRFGADQSHRYINGVLDRF 133


>gi|29375559|ref|NP_814713.1| transcription antitermination protein NusB [Enterococcus faecalis
           V583]
 gi|256852630|ref|ZP_05558001.1| transcription antitermination protein NusB [Enterococcus faecalis
           T8]
 gi|39931895|sp|Q836W8|NUSB_ENTFA RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|29343020|gb|AAO80783.1| N utilization substance protein B [Enterococcus faecalis V583]
 gi|256711975|gb|EEU27012.1| transcription antitermination protein NusB [Enterococcus faecalis
           T8]
          Length = 154

 Score =  142 bits (360), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 40/155 (25%), Positives = 68/155 (43%), Gaps = 3/155 (1%)

Query: 6   NKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVD 65
            K+  K    R   R  A+QAL+ +D     T +   +   Y    D    V      + 
Sbjct: 2   EKRMSKTELTRHEIREKALQALFPLDFNADLTKQ---DAIDYALAYDNREIVSEDGEDLV 58

Query: 66  LEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEV 125
             +  +++ GV  RK  +D +I++ L   WS  RL  I   ILR  + E++    VP  V
Sbjct: 59  PTYLDLLVGGVCSRKAELDEVITNHLGNNWSMQRLAKIDIVILRLAIFEMLYVSDVPNIV 118

Query: 126 IISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIK 160
            ++E V ++  +      KF+N VL  V ++ + +
Sbjct: 119 ALNEAVELSKKYSDDRSRKFVNGVLSNVMKEIDSE 153


>gi|225873914|ref|YP_002755373.1| transcription antitermination factor NusB [Acidobacterium
           capsulatum ATCC 51196]
 gi|225793742|gb|ACO33832.1| transcription antitermination factor NusB [Acidobacterium
           capsulatum ATCC 51196]
          Length = 144

 Score =  142 bits (360), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 34/147 (23%), Positives = 67/147 (45%), Gaps = 11/147 (7%)

Query: 10  LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF 69
           +  + +R  +R  A+Q L+Q D+   +  ++   +   R   + +             + 
Sbjct: 1   MTTTGKRRKSRELAMQMLFQADVGKQTPDDVRKTFWEAREEVEPDTRG----------FA 50

Query: 70  RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISE 129
             +    M+R++ ID LI    +  W  SR+  +  ++LR  + EL+     P  +II+E
Sbjct: 51  EDLFRVAMNREEEIDTLIEQH-SANWKLSRMAAVDRNVLRMAIAELLGFPGTPAPIIINE 109

Query: 130 YVCIAHDFFYGDEPKFINAVLDKVSRK 156
            + IA  +   +   F+N VLD +SR+
Sbjct: 110 ALEIARRYSAPESVNFLNGVLDAISRQ 136


>gi|146321671|ref|YP_001201382.1| transcription antitermination protein NusB [Streptococcus suis
           98HAH33]
 gi|145692477|gb|ABP92982.1| Transcription termination factor [Streptococcus suis 98HAH33]
 gi|292559096|gb|ADE32097.1| Antitermination protein NusB [Streptococcus suis GZ1]
          Length = 140

 Score =  142 bits (360), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 35/146 (23%), Positives = 70/146 (47%), Gaps = 8/146 (5%)

Query: 12  LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71
           + + R   R  A+QA+  ++           +   + +  D E + E V + +   +   
Sbjct: 2   MKNNRHALRKCALQAIVSLEFGQEPV-----QAAQFSYLYDREEEQEGVEIPL---FLLN 53

Query: 72  IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
           +++GV D +  +D  +SS L   W+  RL +I  +I+R G+ E++     P  V ++E +
Sbjct: 54  LVNGVADYRDDLDKELSSRLKAGWTLDRLTLIDKNIMRLGLFEILHFEETPDRVAVNEAI 113

Query: 132 CIAHDFFYGDEPKFINAVLDKVSRKE 157
            +A +F      KF+N VL +  ++E
Sbjct: 114 ELAKEFSDESSAKFVNGVLSQFIKEE 139


>gi|116872790|ref|YP_849571.1| transcription antitermination protein NusB [Listeria welshimeri
           serovar 6b str. SLCC5334]
 gi|123466249|sp|A0AIG0|NUSB_LISW6 RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|116741668|emb|CAK20792.1| N utilization substance protein B/transcription termination factor
           [Listeria welshimeri serovar 6b str. SLCC5334]
          Length = 128

 Score =  142 bits (360), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 39/144 (27%), Positives = 65/144 (45%), Gaps = 17/144 (11%)

Query: 15  RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74
           +R  AR  A+QAL+QI++   S  + I                +++      ++   ++ 
Sbjct: 2   KRREAREKALQALFQIELNEMSLDQAI----------------KNIMEDEQDDYMEKLVE 45

Query: 75  GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134
           GVM  K  ID +I   L   W   RL  +  S+LR  V E+     VP  V ++E + IA
Sbjct: 46  GVMANKAEIDAIIEPNLD-NWRMDRLSKVDLSLLRLSVYEINYLDDVPNRVSLNESIEIA 104

Query: 135 HDFFYGDEPKFINAVLDKVSRKEE 158
             +      KFIN VL  ++ +++
Sbjct: 105 KIYSDEKSSKFINGVLANIAPEDK 128


>gi|223933712|ref|ZP_03625687.1| NusB antitermination factor [Streptococcus suis 89/1591]
 gi|253752490|ref|YP_003025631.1| N utilization substance protein B homolog (NusB protein)
           [Streptococcus suis SC84]
 gi|253754316|ref|YP_003027457.1| N utilization substance protein B homolog (NusB protein)
           [Streptococcus suis P1/7]
 gi|253756250|ref|YP_003029390.1| N utilization substance protein B homolog (NusB protein)
           [Streptococcus suis BM407]
 gi|302024430|ref|ZP_07249641.1| transcription antitermination protein NusB [Streptococcus suis
           05HAS68]
 gi|330833433|ref|YP_004402258.1| transcription antitermination protein NusB [Streptococcus suis ST3]
 gi|223897628|gb|EEF64014.1| NusB antitermination factor [Streptococcus suis 89/1591]
 gi|251816779|emb|CAZ52422.1| N utilization substance protein B homolog (NusB protein)
           [Streptococcus suis SC84]
 gi|251818714|emb|CAZ56550.1| N utilization substance protein B homolog (NusB protein)
           [Streptococcus suis BM407]
 gi|251820562|emb|CAR47318.1| N utilization substance protein B homolog (NusB protein)
           [Streptococcus suis P1/7]
 gi|319758898|gb|ADV70840.1| transcription antitermination protein NusB [Streptococcus suis
           JS14]
 gi|329307656|gb|AEB82072.1| transcription antitermination protein NusB [Streptococcus suis ST3]
          Length = 139

 Score =  142 bits (360), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 35/146 (23%), Positives = 70/146 (47%), Gaps = 8/146 (5%)

Query: 12  LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71
           + + R   R  A+QA+  ++           +   + +  D E + E V + +   +   
Sbjct: 1   MKNNRHALRKCALQAIVSLEFGQEPV-----QAAQFSYLYDREEEQEGVEIPL---FLLN 52

Query: 72  IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
           +++GV D +  +D  +SS L   W+  RL +I  +I+R G+ E++     P  V ++E +
Sbjct: 53  LVNGVADYRDDLDKELSSRLKAGWTLDRLTLIDKNIMRLGLFEILHFEETPDRVAVNEAI 112

Query: 132 CIAHDFFYGDEPKFINAVLDKVSRKE 157
            +A +F      KF+N VL +  ++E
Sbjct: 113 ELAKEFSDESSAKFVNGVLSQFIKEE 138


>gi|269836410|ref|YP_003318638.1| NusB antitermination factor [Sphaerobacter thermophilus DSM 20745]
 gi|269785673|gb|ACZ37816.1| NusB antitermination factor [Sphaerobacter thermophilus DSM 20745]
          Length = 140

 Score =  142 bits (360), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 36/139 (25%), Positives = 63/139 (45%), Gaps = 12/139 (8%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           R  AR  A+Q LY+ D+     +++++ Y +           +         +   +I G
Sbjct: 7   RHQARTLALQILYEADVAQHPASDVLARYTS-----------DLSLPQPVRRYVERLISG 55

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
           VM+  + ID  I +     +   +L  I  +ILR  + EL   H VPV+  I+E V +A 
Sbjct: 56  VMEDLEKIDAEIGAA-APAFPVDQLPPIDRNILRIAIYELRNEHDVPVKAAINEAVELAK 114

Query: 136 DFFYGDEPKFINAVLDKVS 154
            F   +  +F+N VL  ++
Sbjct: 115 RFGGDNSSRFVNGVLGTIA 133


>gi|94311627|ref|YP_584837.1| transcription antitermination protein NusB [Cupriavidus
           metallidurans CH34]
 gi|119390804|sp|Q1LJV8|NUSB_RALME RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|93355479|gb|ABF09568.1| transcription termination factor, N utilization substance protein
           B-like protein(Protein nusB) [Cupriavidus metallidurans
           CH34]
          Length = 171

 Score =  142 bits (360), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 34/158 (21%), Positives = 60/158 (37%), Gaps = 15/158 (9%)

Query: 4   QDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLH 63
            + K   K + RR   R  A+Q LYQ  +       I +                  +  
Sbjct: 24  TEPKAPPKSARRRS--RELALQGLYQWLLNRNDIGAIQAHLHD-----------AQGFNK 70

Query: 64  VDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPV 123
            D E F  ++ G +  +  +       L    +   L  +  + L  G  EL+ C  +P 
Sbjct: 71  ADREHFDALLGGAVREEARLTAAFEPFLDR--TVDELSPVERAALLVGSYELVHCLDIPY 128

Query: 124 EVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKR 161
           +V+I+E V +   F   +  K++N VLDK++ +     
Sbjct: 129 KVVINEAVELTKTFGGVEGYKYVNGVLDKLAAQVRAPE 166


>gi|118579723|ref|YP_900973.1| NusB antitermination factor [Pelobacter propionicus DSM 2379]
 gi|166215707|sp|A1ANJ5|NUSB_PELPD RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|118502433|gb|ABK98915.1| NusB antitermination factor [Pelobacter propionicus DSM 2379]
          Length = 143

 Score =  142 bits (360), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 38/150 (25%), Positives = 69/150 (46%), Gaps = 16/150 (10%)

Query: 16  RGIARLAAVQALYQIDIIGC-STTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74
           R  +R  A+Q LY +D        E++  +   +  +D               +   ++ 
Sbjct: 4   RRESRELALQMLYALDSNASVGPREMLQMFREEQPVSDRL-----------RLFAEELVQ 52

Query: 75  GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134
           GV++ +  ID  I    ++ WS SR+  +  +I+R    EL+    +P +V I+E + IA
Sbjct: 53  GVLEHRPAIDAAI-KARSKNWSLSRMPKVDLNIMRLATYELMFRGDIPKKVSINEAIEIA 111

Query: 135 HDFFYGDEPKFINAVLDKV---SRKEEIKR 161
             F   D P F+N +LD++   ++ EE  R
Sbjct: 112 RRFGDKDSPAFVNGILDEIPSCAKAEEPDR 141


>gi|88856244|ref|ZP_01130904.1| transcription termination factor [marine actinobacterium PHSC20C1]
 gi|88814563|gb|EAR24425.1| transcription termination factor [marine actinobacterium PHSC20C1]
          Length = 137

 Score =  142 bits (360), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 33/143 (23%), Positives = 62/143 (43%), Gaps = 9/143 (6%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           R  AR  A+  +Y  D+ G S  E ++         ++   +          + + ++ G
Sbjct: 4   RSKARKRALDLMYGADVRGESINEALA--------TESSRALSDPARATSWAYAQQVVVG 55

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
           + +    ID LI +  ++ W  +R+  +  ++LR  + E++    VP  V ISE V  A 
Sbjct: 56  ITEHGDEIDELIETY-SQGWPLNRMPAVDRALLRIALWEILYNDEVPAGVAISEAVESAK 114

Query: 136 DFFYGDEPKFINAVLDKVSRKEE 158
                D   FIN +L +++   E
Sbjct: 115 VHSTEDSAGFINGLLGRIAASNE 137


>gi|255971431|ref|ZP_05422017.1| antitermination protein NusB [Enterococcus faecalis T1]
 gi|255974044|ref|ZP_05424630.1| antitermination protein NusB [Enterococcus faecalis T2]
 gi|256617900|ref|ZP_05474746.1| antitermination protein NusB [Enterococcus faecalis ATCC 4200]
 gi|256761733|ref|ZP_05502313.1| antitermination protein NusB [Enterococcus faecalis T3]
 gi|256957069|ref|ZP_05561240.1| antitermination protein NusB [Enterococcus faecalis DS5]
 gi|256960159|ref|ZP_05564330.1| antitermination protein NusB [Enterococcus faecalis Merz96]
 gi|256962598|ref|ZP_05566769.1| antitermination protein NusB [Enterococcus faecalis HIP11704]
 gi|257077865|ref|ZP_05572226.1| antitermination protein NusB [Enterococcus faecalis JH1]
 gi|257081230|ref|ZP_05575591.1| antitermination protein NusB [Enterococcus faecalis E1Sol]
 gi|257083886|ref|ZP_05578247.1| antitermination protein NusB [Enterococcus faecalis Fly1]
 gi|257086336|ref|ZP_05580697.1| antitermination protein NusB [Enterococcus faecalis D6]
 gi|257089386|ref|ZP_05583747.1| antitermination protein nusB [Enterococcus faecalis CH188]
 gi|257415595|ref|ZP_05592589.1| antitermination protein NusB [Enterococcus faecalis AR01/DG]
 gi|257418568|ref|ZP_05595562.1| transcription antitermination protein nusB [Enterococcus faecalis
           T11]
 gi|257421226|ref|ZP_05598216.1| transcription antitermination protein nusB [Enterococcus faecalis
           X98]
 gi|294780567|ref|ZP_06745930.1| transcription antitermination factor NusB [Enterococcus faecalis
           PC1.1]
 gi|300859628|ref|ZP_07105716.1| transcription antitermination factor NusB [Enterococcus faecalis
           TUSoD Ef11]
 gi|255962449|gb|EET94925.1| antitermination protein NusB [Enterococcus faecalis T1]
 gi|255966916|gb|EET97538.1| antitermination protein NusB [Enterococcus faecalis T2]
 gi|256597427|gb|EEU16603.1| antitermination protein NusB [Enterococcus faecalis ATCC 4200]
 gi|256682984|gb|EEU22679.1| antitermination protein NusB [Enterococcus faecalis T3]
 gi|256947565|gb|EEU64197.1| antitermination protein NusB [Enterococcus faecalis DS5]
 gi|256950655|gb|EEU67287.1| antitermination protein NusB [Enterococcus faecalis Merz96]
 gi|256953094|gb|EEU69726.1| antitermination protein NusB [Enterococcus faecalis HIP11704]
 gi|256985895|gb|EEU73197.1| antitermination protein NusB [Enterococcus faecalis JH1]
 gi|256989260|gb|EEU76562.1| antitermination protein NusB [Enterococcus faecalis E1Sol]
 gi|256991916|gb|EEU79218.1| antitermination protein NusB [Enterococcus faecalis Fly1]
 gi|256994366|gb|EEU81668.1| antitermination protein NusB [Enterococcus faecalis D6]
 gi|256998198|gb|EEU84718.1| antitermination protein nusB [Enterococcus faecalis CH188]
 gi|257157423|gb|EEU87383.1| antitermination protein NusB [Enterococcus faecalis ARO1/DG]
 gi|257160396|gb|EEU90356.1| transcription antitermination protein nusB [Enterococcus faecalis
           T11]
 gi|257163050|gb|EEU93010.1| transcription antitermination protein nusB [Enterococcus faecalis
           X98]
 gi|294452394|gb|EFG20833.1| transcription antitermination factor NusB [Enterococcus faecalis
           PC1.1]
 gi|295113845|emb|CBL32482.1| transcription antitermination factor NusB [Enterococcus sp. 7L76]
 gi|300850446|gb|EFK78195.1| transcription antitermination factor NusB [Enterococcus faecalis
           TUSoD Ef11]
 gi|323480217|gb|ADX79656.1| transcription antitermination factor NusB [Enterococcus faecalis
           62]
          Length = 150

 Score =  142 bits (360), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 39/150 (26%), Positives = 66/150 (44%), Gaps = 3/150 (2%)

Query: 11  KLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFR 70
           K    R   R  A+QAL+ +D     T +   +   Y    D    V      +   +  
Sbjct: 3   KTELTRHEIREKALQALFPLDFNADLTKQ---DAIDYALAYDNREIVSEDGEDLVPTYLD 59

Query: 71  VIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEY 130
           +++ GV  RK  +D +I++ L   WS  RL  I   ILR  + E++    VP  V ++E 
Sbjct: 60  LLVGGVCSRKAELDEVITNHLGNNWSMQRLAKIDIVILRLAIFEMLYVSDVPNIVALNEA 119

Query: 131 VCIAHDFFYGDEPKFINAVLDKVSRKEEIK 160
           V ++  +      KF+N VL  V ++ + +
Sbjct: 120 VELSKKYSDDRSRKFVNGVLSNVMKEIDSE 149


>gi|299143829|ref|ZP_07036909.1| transcription antitermination factor NusB [Peptoniphilus sp. oral
           taxon 386 str. F0131]
 gi|298518314|gb|EFI42053.1| transcription antitermination factor NusB [Peptoniphilus sp. oral
           taxon 386 str. F0131]
          Length = 141

 Score =  142 bits (360), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 39/147 (26%), Positives = 69/147 (46%), Gaps = 12/147 (8%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           R  AR+  +Q LYQ+DI    +++ ++ +      ++ E D           +    I  
Sbjct: 3   RKKARIGQMQVLYQMDITDDFSSDGLNTFLENFEFSEEEKD-----------YINSTIPE 51

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
           ++   ++ID  I S L E WS +RL  +   +LR  + E++    +P EV I+E V I+ 
Sbjct: 52  IIKNLENIDQTIQSHL-EGWSLNRLAKVDKEVLRIAIYEILYRDDIPEEVSINEAVEISK 110

Query: 136 DFFYGDEPKFINAVLDKVSRKEEIKRS 162
            F   +  KFIN +L  + R   ++  
Sbjct: 111 QFGSSESSKFINGILGSIYRSMHVENQ 137


>gi|220904887|ref|YP_002480199.1| NusB antitermination factor [Desulfovibrio desulfuricans subsp.
           desulfuricans str. ATCC 27774]
 gi|254772632|sp|B8J194|NUSB_DESDA RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|219869186|gb|ACL49521.1| NusB antitermination factor [Desulfovibrio desulfuricans subsp.
           desulfuricans str. ATCC 27774]
          Length = 164

 Score =  142 bits (360), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 41/160 (25%), Positives = 69/160 (43%), Gaps = 5/160 (3%)

Query: 11  KLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFR 70
           K + RRG  R  A Q LY +      + E +    ++R   D     E   + V+   F 
Sbjct: 5   KNATRRGE-RELAFQVLYGLSFTPARSLEELR--RSFRMSPDNLARSEESGVPVEACGFS 61

Query: 71  -VIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISE 129
             ++ GV      +D  IS   +  W   R+  +  ++LR    EL+    VP +V I+E
Sbjct: 62  WELVEGVWSNSSALDETISRF-SHNWRVDRMGRVELTLLRLAAYELVFRADVPPKVAINE 120

Query: 130 YVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRSGCVSAIT 169
            + ++  F  G+   FIN +LD V++  E       +A +
Sbjct: 121 ALELSRQFGEGNAKNFINGILDAVAKALENGELQRCAAPS 160


>gi|257063533|ref|YP_003143205.1| transcription antitermination factor NusB [Slackia
           heliotrinireducens DSM 20476]
 gi|256791186|gb|ACV21856.1| transcription antitermination factor NusB [Slackia
           heliotrinireducens DSM 20476]
          Length = 183

 Score =  142 bits (359), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 40/146 (27%), Positives = 70/146 (47%), Gaps = 14/146 (9%)

Query: 10  LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF 69
           +   + R + R AA+Q LY+ DI+G    +++ E       A  +             + 
Sbjct: 1   MAKRYDRTLGRRAALQVLYESDILGTPVDKVVDEGVVPEEAALND-------------YA 47

Query: 70  RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISE 129
           R ++ GV      ID  IS   ++ W+  R+ ++  ++LR  V E+     VPV V I+E
Sbjct: 48  RRLLLGVASHITDIDRQISKS-SKNWAIDRMPLVDRALLRITVFEMQHVDEVPVAVSINE 106

Query: 130 YVCIAHDFFYGDEPKFINAVLDKVSR 155
            V +A DF   D  +F+N +L +++R
Sbjct: 107 AVELAKDFGGDDTYRFVNGILGRIAR 132


>gi|228475963|ref|ZP_04060671.1| transcription antitermination factor NusB [Staphylococcus hominis
           SK119]
 gi|314936353|ref|ZP_07843700.1| transcription antitermination factor NusB [Staphylococcus hominis
           subsp. hominis C80]
 gi|228269786|gb|EEK11266.1| transcription antitermination factor NusB [Staphylococcus hominis
           SK119]
 gi|313654972|gb|EFS18717.1| transcription antitermination factor NusB [Staphylococcus hominis
           subsp. hominis C80]
          Length = 128

 Score =  142 bits (359), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 41/138 (29%), Positives = 60/138 (43%), Gaps = 13/138 (9%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           R  +R  A Q L+Q+++        ++  E   F  D        Y  +D E+   ++ G
Sbjct: 3   RKESRKQAFQTLFQLEMKNTD----LTINEAINFIKD-------DYPDLDFEFIHWLVTG 51

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
           V D +Q +D  I   L + WS  RL      ILR    EL+     P +VII+E V +  
Sbjct: 52  VKDHEQVLDQSIEPKL-KDWSIQRLLKTDRIILRMATFELLHS-DTPPKVIINEAVELTK 109

Query: 136 DFFYGDEPKFINAVLDKV 153
            F      KFIN VL  +
Sbjct: 110 QFSDEGHYKFINGVLSNI 127


>gi|294102024|ref|YP_003553882.1| NusB antitermination factor [Aminobacterium colombiense DSM 12261]
 gi|293617004|gb|ADE57158.1| NusB antitermination factor [Aminobacterium colombiense DSM 12261]
          Length = 158

 Score =  142 bits (359), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 42/144 (29%), Positives = 67/144 (46%), Gaps = 12/144 (8%)

Query: 12  LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71
           L  +R  +R  A+Q LY +DI      E ++E  +     D E DV        + +  +
Sbjct: 6   LPQKRRRSREIAIQILYALDIRNS---EKVNEMFSLYPFGDEEPDV--------VSYASL 54

Query: 72  IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
           ++ GV + +  ID LI   +   W   R+  +  + LR  + E I    +PV V ISE V
Sbjct: 55  LVKGVWEARFEIDTLIRKHVV-GWRPERMVAVDRAALRLAIYEGIIKQMIPVPVAISEAV 113

Query: 132 CIAHDFFYGDEPKFINAVLDKVSR 155
            +A  F   +  +F+N VL K+ R
Sbjct: 114 ELAKTFGTDESGRFVNGVLGKIVR 137


>gi|309780817|ref|ZP_07675558.1| transcription antitermination factor NusB [Ralstonia sp. 5_7_47FAA]
 gi|308920499|gb|EFP66155.1| transcription antitermination factor NusB [Ralstonia sp. 5_7_47FAA]
          Length = 155

 Score =  142 bits (359), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 32/139 (23%), Positives = 57/139 (41%), Gaps = 13/139 (9%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           R  AR  A+Q LYQ  +       + +            L     +   D   F  ++HG
Sbjct: 18  RRRARELALQGLYQWLLNRNDPGVVEA-----------HLQDAQGFNKADRAHFDALLHG 66

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
            +  +  +    +  L      + L  +  + L  G  EL+ C  +P +V+I+E V +  
Sbjct: 67  AIREETTLTEAFTPYLDR--PVAELSPVERAALLVGAYELVHCVDIPYKVVINEAVELTK 124

Query: 136 DFFYGDEPKFINAVLDKVS 154
            F   +  K++N VLDK++
Sbjct: 125 TFGGVEGYKYVNGVLDKLA 143


>gi|218888175|ref|YP_002437496.1| NusB antitermination factor [Desulfovibrio vulgaris str. 'Miyazaki
           F']
 gi|226738898|sp|B8DJF1|NUSB_DESVM RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|218759129|gb|ACL10028.1| NusB antitermination factor [Desulfovibrio vulgaris str. 'Miyazaki
           F']
          Length = 165

 Score =  142 bits (359), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 39/166 (23%), Positives = 67/166 (40%), Gaps = 12/166 (7%)

Query: 1   MTIQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEII-SEYETYRFCADTELDVES 59
           M  Q  K        R   R  A Q LY +     ++   + + Y      AD   + E 
Sbjct: 1   MANQGKKPT------RRSERALAFQVLYGLSFTPATSEGALRAAYAASPDVADRNAEDEK 54

Query: 60  VYLHVDLE----WFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLEL 115
                       +   +IHGV   +  +D  +S   ++ W   R+  +  ++LR  V E+
Sbjct: 55  ADRQAPATAPQGYAWEVIHGVWKTQAELDEAVSGF-SQNWRVERMGRVELTLLRIAVYEM 113

Query: 116 IECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKR 161
           +    VP +V ++E + ++  F   +   FIN +LD V+R  E  R
Sbjct: 114 LFRDDVPAKVAMNEAIELSKQFGDDNSRGFINGILDAVARAVESGR 159


>gi|323140958|ref|ZP_08075870.1| transcription antitermination factor NusB [Phascolarctobacterium
           sp. YIT 12067]
 gi|322414561|gb|EFY05368.1| transcription antitermination factor NusB [Phascolarctobacterium
           sp. YIT 12067]
          Length = 154

 Score =  142 bits (359), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 44/153 (28%), Positives = 71/153 (46%), Gaps = 13/153 (8%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVD---------- 65
           R +AR  A+QAL+QID  G    + +            E  V+                 
Sbjct: 3   RRLAREVALQALFQIDFTGNEVEQAVDAALDEHEELHPEAAVDKALDQHKELGAASARNY 62

Query: 66  -LEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHS-VPV 123
             ++  V+++GV++ K+ ID  ++SC T  W+  R+     +ILR  V E+      +  
Sbjct: 63  VKKYSMVLVNGVVENKEAIDATLNSCAT-DWTVERMPATDRNILRVAVFEMRHEKPALAA 121

Query: 124 EVIISEYVCIAHDFFYGDEPKFINAVLDKVSRK 156
            V I+E V IA  +   + P+FIN VL K++RK
Sbjct: 122 GVAINEAVEIAKAYGTEESPRFINGVLGKLARK 154


>gi|209559915|ref|YP_002286387.1| transcription antitermination protein NusB [Streptococcus pyogenes
           NZ131]
 gi|238055478|sp|B5XI30|NUSB_STRPZ RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|209541116|gb|ACI61692.1| N utilization substance B-like protein [Streptococcus pyogenes
           NZ131]
          Length = 150

 Score =  142 bits (359), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 35/143 (24%), Positives = 69/143 (48%), Gaps = 6/143 (4%)

Query: 14  HRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVII 73
           + R   R  A QAL+ I++      E+++    + +  D     ++  L + + +   ++
Sbjct: 7   NSRRDLRERAFQALFNIEMG----AELLAA-SQFAYGYDKVTGEDAQVLELPI-FLLSLV 60

Query: 74  HGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCI 133
            GV + K+ +D LIS+ L + WS  RL +   ++LR G+ E+      P  V ++E + +
Sbjct: 61  TGVNNHKEELDNLISTHLKKGWSLERLTLTDKTLLRLGLFEIKYFDETPDRVALNEIIEV 120

Query: 134 AHDFFYGDEPKFINAVLDKVSRK 156
           A  +      KFIN +L +   +
Sbjct: 121 AKKYSDETSAKFINGLLSQYVSE 143


>gi|313201935|ref|YP_004040593.1| nusb antitermination factor [Methylovorus sp. MP688]
 gi|312441251|gb|ADQ85357.1| NusB antitermination factor [Methylovorus sp. MP688]
          Length = 158

 Score =  142 bits (359), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 44/170 (25%), Positives = 73/170 (42%), Gaps = 20/170 (11%)

Query: 1   MTIQDNK----KDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELD 56
           M+  D K    K +K S  R  +R  A++ +Y+  +       I+ E             
Sbjct: 1   MSDTDQKPGDAKPVKASRNRRKSRELALKGIYRNLLNQADFRAILRELAD---------- 50

Query: 57  VESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELI 116
            E  +   D E+ R ++ GV+  ++ +D  I+  +        L  I   IL     ELI
Sbjct: 51  -EPEFDKADQEYLRKLLDGVLAEREELDRRIAVFVDR--PMQELSPIEHGILCLSAYELI 107

Query: 117 ECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRSGCVS 166
              S+P  V I+E V +A  +   D  K++N VLDK++ +    R G V+
Sbjct: 108 FDLSIPYRVAINEGVELAKIYGGTDGHKYVNGVLDKLAAEA---RPGEVN 154


>gi|241767422|ref|ZP_04765122.1| NusB antitermination factor [Acidovorax delafieldii 2AN]
 gi|241361805|gb|EER58071.1| NusB antitermination factor [Acidovorax delafieldii 2AN]
          Length = 174

 Score =  142 bits (359), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 40/153 (26%), Positives = 68/153 (44%), Gaps = 14/153 (9%)

Query: 7   KKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDL 66
           +K    S+ R  AR  A+QALYQ  + G     I           D      + +   D 
Sbjct: 29  RKAASKSN-RSRAREFALQALYQHIVGGNEAAAI-----------DAFTRDLAGFHKADA 76

Query: 67  EWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVI 126
             +  ++HG +D    +D LI+  L  K   + +  I  + +  GV E   C  VP  V+
Sbjct: 77  AHYDAVLHGCIDAAADLDALITPLLDRK--MAEISPIERATMWIGVYEFQHCLDVPWRVV 134

Query: 127 ISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEI 159
           ++E + +A +F   D  K++NAVL+ ++ +   
Sbjct: 135 LNECIELAKEFGGTDGHKYVNAVLNGLAPRLRA 167


>gi|254492114|ref|ZP_05105289.1| transcription antitermination factor NusB [Methylophaga thiooxidans
           DMS010]
 gi|224462666|gb|EEF78940.1| transcription antitermination factor NusB [Methylophaga thiooxydans
           DMS010]
          Length = 150

 Score =  142 bits (359), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 39/138 (28%), Positives = 65/138 (47%), Gaps = 13/138 (9%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           R  AR AAVQALYQ  +   +  +   E+ T  +              +D ++F  +I G
Sbjct: 7   RTKARRAAVQALYQALVNNETPQKAGLEFVTAEYAD-----------KIDRKYFTTLIEG 55

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
            +  +Q ID  +S  +      + +D +  S+LR  V E +    +P  V+++E V +A 
Sbjct: 56  TIKYQQAIDAELSEAVDR--DLNAVDPVEISVLRLAVFEFMHLPEIPYRVVLNEAVELAK 113

Query: 136 DFFYGDEPKFINAVLDKV 153
            F      K++N VLDK+
Sbjct: 114 SFGGEQGHKYVNGVLDKM 131


>gi|71904194|ref|YP_280997.1| transcription antitermination protein NusB [Streptococcus pyogenes
           MGAS6180]
 gi|94989179|ref|YP_597280.1| transcription antitermination protein NusB [Streptococcus pyogenes
           MGAS9429]
 gi|94993067|ref|YP_601166.1| transcription antitermination protein NusB [Streptococcus pyogenes
           MGAS2096]
 gi|71803289|gb|AAX72642.1| N utilization substance protein B [Streptococcus pyogenes MGAS6180]
 gi|94542687|gb|ABF32736.1| N utilization substance protein B [Streptococcus pyogenes MGAS9429]
 gi|94546575|gb|ABF36622.1| N utilization substance protein B [Streptococcus pyogenes MGAS2096]
          Length = 156

 Score =  142 bits (359), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 35/143 (24%), Positives = 69/143 (48%), Gaps = 6/143 (4%)

Query: 14  HRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVII 73
           + R   R  A QAL+ I++      E+++    + +  D     ++  L + + +   ++
Sbjct: 13  NSRRDLRERAFQALFNIEMG----AELLAA-SQFAYGYDKVTGEDAQVLELPI-FLLSLV 66

Query: 74  HGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCI 133
            GV + K+ +D LIS+ L + WS  RL +   ++LR G+ E+      P  V ++E + +
Sbjct: 67  TGVNNHKEELDNLISTHLKKGWSLERLTLTDKTLLRLGLFEIKYFDETPDRVALNEIIEV 126

Query: 134 AHDFFYGDEPKFINAVLDKVSRK 156
           A  +      KFIN +L +   +
Sbjct: 127 AKKYSDETSAKFINGLLSQYVSE 149


>gi|73540472|ref|YP_294992.1| transcription antitermination protein NusB [Ralstonia eutropha
           JMP134]
 gi|119390803|sp|Q474N5|NUSB_RALEJ RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|72117885|gb|AAZ60148.1| NusB antitermination factor [Ralstonia eutropha JMP134]
          Length = 167

 Score =  142 bits (359), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 39/165 (23%), Positives = 66/165 (40%), Gaps = 18/165 (10%)

Query: 4   QDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLH 63
            + K   K + RR   R  A+Q LYQ  +       I +                  +  
Sbjct: 20  TEAKAPPKSARRRS--RELALQGLYQWLLNRNDIGAIQAHLHD-----------AQGFNK 66

Query: 64  VDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPV 123
            D E F  +++G +  +  +       L  K     L  +  + L  G  EL+ C  +P 
Sbjct: 67  ADSEHFDALLNGAVREEARLTAAFEPFLDRK--VEELSPVERAALLVGSYELVHCVDIPY 124

Query: 124 EVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRSGCVSAI 168
           +V+I+E V +   F   +  K++N VLDK++ +    RS  V+A 
Sbjct: 125 KVVINEAVELTKTFGGVEGYKYVNGVLDKLAAQV---RSAEVAAR 166


>gi|193212152|ref|YP_001998105.1| NusB antitermination factor [Chlorobaculum parvum NCIB 8327]
 gi|238692614|sp|B3QLL5|NUSB_CHLP8 RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|193085629|gb|ACF10905.1| NusB antitermination factor [Chlorobaculum parvum NCIB 8327]
          Length = 164

 Score =  142 bits (359), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 37/153 (24%), Positives = 69/153 (45%), Gaps = 14/153 (9%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           R   R   +QALY +++    T    +   T     D             +++F  ++  
Sbjct: 5   RRQLREKIIQALYTLELRDVDTDSATNWLLTKEMADDPNA----------MKFFNHLMKS 54

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
           ++D ++ ID  I+   T  W  +R+ +I  +ILR  + E++ C  +P +V I+E + IA 
Sbjct: 55  IIDHREEIDRHIAKH-TFNWDMNRIAIIDKNILRMALAEILYCEDIPPKVSINEAIEIAK 113

Query: 136 DF-FYGDEPKFINAVLDKVSRKEEIKRSGCVSA 167
            F       KF+N +LD +    ++K  G +  
Sbjct: 114 KFNSTEKSSKFVNGILDAIF--NDLKAEGRIQK 144


>gi|113868812|ref|YP_727301.1| transcription antitermination protein NusB [Ralstonia eutropha H16]
 gi|122946671|sp|Q0K7T8|NUSB_RALEH RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|113527588|emb|CAJ93933.1| transcription termination factor [Ralstonia eutropha H16]
          Length = 172

 Score =  142 bits (359), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 35/151 (23%), Positives = 60/151 (39%), Gaps = 15/151 (9%)

Query: 4   QDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLH 63
            + K   K + RR   R  A+Q LYQ  +       I +                  +  
Sbjct: 25  TEAKAPPKSARRRS--RELALQGLYQWLLNRNDIGAIQAHLHD-----------AQGFNK 71

Query: 64  VDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPV 123
            D E F  +++G +  +  +       L  K     L  +  + L  G  EL+ C  +P 
Sbjct: 72  ADREHFDALLNGAVREEARLTAAFEPFLDRK--VEELSPVERAALLVGSYELVHCLDIPY 129

Query: 124 EVIISEYVCIAHDFFYGDEPKFINAVLDKVS 154
           +V+I+E V +   F   +  K++N VLDK++
Sbjct: 130 KVVINEAVELTKTFGGVEGYKYVNGVLDKLA 160


>gi|289434640|ref|YP_003464512.1| transcription antitermination factor [Listeria seeligeri serovar
           1/2b str. SLCC3954]
 gi|315303024|ref|ZP_07873735.1| transcription antitermination factor NusB [Listeria ivanovii FSL
           F6-596]
 gi|289170884|emb|CBH27426.1| transcription antitermination factor [Listeria seeligeri serovar
           1/2b str. SLCC3954]
 gi|313628606|gb|EFR97028.1| transcription antitermination factor NusB [Listeria ivanovii FSL
           F6-596]
 gi|313633359|gb|EFS00202.1| transcription antitermination factor NusB [Listeria seeligeri FSL
           N1-067]
 gi|313638045|gb|EFS03323.1| transcription antitermination factor NusB [Listeria seeligeri FSL
           S4-171]
          Length = 128

 Score =  142 bits (359), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 39/144 (27%), Positives = 65/144 (45%), Gaps = 17/144 (11%)

Query: 15  RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74
           +R  AR  A+QAL+QI++   S  + I                +++      ++   ++ 
Sbjct: 2   KRREAREKALQALFQIELNEMSLDQAI----------------KNIMEDEQDDYMEKLVE 45

Query: 75  GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134
           GVM  K  ID +I   L   W   RL  +  S+LR  V E+     VP  V ++E + IA
Sbjct: 46  GVMANKAEIDAIIEPNLD-NWRMDRLSKVDLSLLRLSVYEINYLSDVPNRVSLNESIEIA 104

Query: 135 HDFFYGDEPKFINAVLDKVSRKEE 158
             +      KFIN VL  ++ +++
Sbjct: 105 KIYSDEKSSKFINGVLANIAPEDK 128


>gi|290893532|ref|ZP_06556515.1| transcription antitermination protein NusB [Listeria monocytogenes
           FSL J2-071]
 gi|290556877|gb|EFD90408.1| transcription antitermination protein NusB [Listeria monocytogenes
           FSL J2-071]
          Length = 128

 Score =  142 bits (358), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 39/144 (27%), Positives = 65/144 (45%), Gaps = 17/144 (11%)

Query: 15  RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74
           +R  AR  A+QAL+QI++   S  + I                +++      ++   ++ 
Sbjct: 2   KRREAREKALQALFQIELNEMSLDQAI----------------KNIMEDERDDYMEKLVE 45

Query: 75  GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134
           GVM  K  ID +I   L   W   RL  +  S+LR  V E+     VP  V ++E + IA
Sbjct: 46  GVMANKVEIDAIIEPNLD-NWRIDRLSKVDLSLLRLSVYEIKYLDDVPNRVSLNESIEIA 104

Query: 135 HDFFYGDEPKFINAVLDKVSRKEE 158
             +      KFIN VL  ++ +++
Sbjct: 105 KIYSDEKSSKFINGVLANIAPEDK 128


>gi|19746754|ref|NP_607890.1| transcription antitermination protein NusB [Streptococcus pyogenes
           MGAS8232]
 gi|21911108|ref|NP_665376.1| transcription antitermination protein NusB [Streptococcus pyogenes
           MGAS315]
 gi|139473181|ref|YP_001127896.1| transcription antitermination protein NusB [Streptococcus pyogenes
           str. Manfredo]
 gi|54037927|sp|P65585|NUSB_STRP8 RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|54041677|sp|P65584|NUSB_STRP3 RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|119390833|sp|Q1JA39|NUSB_STRPB RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|119390834|sp|Q1JK87|NUSB_STRPC RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|119390837|sp|Q48RL8|NUSB_STRPM RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|166215723|sp|A2RCS4|NUSB_STRPG RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|19748985|gb|AAL98389.1| putative transcriptional terminator [Streptococcus pyogenes
           MGAS8232]
 gi|21905318|gb|AAM80179.1| putative transcriptional terminator [Streptococcus pyogenes
           MGAS315]
 gi|134271427|emb|CAM29647.1| N utilization substance protein B homolog (NusB protein)
           [Streptococcus pyogenes str. Manfredo]
          Length = 150

 Score =  142 bits (358), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 35/143 (24%), Positives = 69/143 (48%), Gaps = 6/143 (4%)

Query: 14  HRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVII 73
           + R   R  A QAL+ I++      E+++    + +  D     ++  L + + +   ++
Sbjct: 7   NSRRDLRERAFQALFNIEMG----AELLAA-SQFAYGYDKVTGEDAQVLELPI-FLLSLV 60

Query: 74  HGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCI 133
            GV + K+ +D LIS+ L + WS  RL +   ++LR G+ E+      P  V ++E + +
Sbjct: 61  TGVNNHKEELDNLISTHLKKGWSLERLTLTDKTLLRLGLFEIKYFDETPDRVALNEIIEV 120

Query: 134 AHDFFYGDEPKFINAVLDKVSRK 156
           A  +      KFIN +L +   +
Sbjct: 121 AKKYSDETSAKFINGLLSQYVSE 143


>gi|242278127|ref|YP_002990256.1| NusB antitermination factor [Desulfovibrio salexigens DSM 2638]
 gi|242121021|gb|ACS78717.1| NusB antitermination factor [Desulfovibrio salexigens DSM 2638]
          Length = 155

 Score =  142 bits (358), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 36/150 (24%), Positives = 70/150 (46%), Gaps = 15/150 (10%)

Query: 16  RGIARLAAVQALYQIDI----IGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71
           R   R+ A Q LY +       G +T  I ++        + +L          + + R 
Sbjct: 10  RRKGRVLAFQVLYGLSFVPPHGGWTTERIYNQSPAVIRETEEDL----------ILFARE 59

Query: 72  IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
           ++ G+ + ++ +D +I    ++ W   R+  +  +ILR  V EL+    +P++V I+E +
Sbjct: 60  LLIGIWNAQEELDEVIGRY-SKHWKIERIAKVELAILRLAVYELVHKPDIPLKVGINEGI 118

Query: 132 CIAHDFFYGDEPKFINAVLDKVSRKEEIKR 161
            +A  F  G+   FIN +LD V+R  +  +
Sbjct: 119 ELAKKFGDGNSRNFINGILDAVARDIDTGK 148


>gi|325266364|ref|ZP_08133042.1| transcription antitermination factor NusB [Kingella denitrificans
           ATCC 33394]
 gi|324982157|gb|EGC17791.1| transcription antitermination factor NusB [Kingella denitrificans
           ATCC 33394]
          Length = 148

 Score =  142 bits (358), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 42/161 (26%), Positives = 66/161 (40%), Gaps = 17/161 (10%)

Query: 5   DNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHV 64
              K  K S RR  AR  AVQALYQ  I      E+      +           + + + 
Sbjct: 2   SEPKKTKKSPRRR-AREFAVQALYQTAINKIPAEEVAKNTREH-----------TDFKNA 49

Query: 65  DLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVE 124
           D E F  +  G   +++     I   L    +   +  +  ++L   V EL      P  
Sbjct: 50  DDELFTAVFFGAHRQQREYMQQIRPHLDRDENL--ISPVERAVLLLAVHELAAMPETPYP 107

Query: 125 VIISEYVCIAHDFFYGDEPKFINAVLDKVS---RKEEIKRS 162
           V+I+E + +   F   D  KFIN++LDK++   R  + KR+
Sbjct: 108 VVINEAIELTKTFGGTDSHKFINSILDKLAAELRPNDPKRA 148


>gi|33519701|ref|NP_878533.1| transcription antitermination protein NusB [Candidatus Blochmannia
           floridanus]
 gi|39931819|sp|Q7VRI1|NUSB_BLOFL RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|33504046|emb|CAD83307.1| transcription termination; L factor [Candidatus Blochmannia
           floridanus]
          Length = 138

 Score =  142 bits (358), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 37/142 (26%), Positives = 69/142 (48%), Gaps = 13/142 (9%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           R  ARL A+QALY   +              Y   ++  + ++++  + ++ +F  +  G
Sbjct: 6   RRFARLCALQALYAWQLSKND----------YTMISNYVIKIQNI-QNFNISYFLTLYIG 54

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
           V+   + ++ L+   L+       +D I  S+L   + EL +C  VP +V+I+E + +A 
Sbjct: 55  VIHTIKELNTLMIPYLSRG--LKAIDYIEYSVLLIALFELTQCCDVPYKVVINEAIELAK 112

Query: 136 DFFYGDEPKFINAVLDKVSRKE 157
            F      KFIN VLDK+  ++
Sbjct: 113 IFGSEKSHKFINGVLDKIITEK 134


>gi|291532856|emb|CBL05969.1| transcription antitermination factor NusB [Megamonas hypermegale
           ART12/1]
          Length = 131

 Score =  142 bits (358), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 33/142 (23%), Positives = 64/142 (45%), Gaps = 15/142 (10%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           R  AR  A+Q+L+Q+D   C     I    +++                D ++ R+++ G
Sbjct: 3   RRQAREIALQSLFQLDFNECEVDSAIENVLSHK-----------KLHEADCDFVRILVSG 51

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHS--VPVEVIISEYVCI 133
             +  + ID +I+   ++ W   R+  I  +I+R  + E+       VP  + I+E V +
Sbjct: 52  TRENLESIDKMIAEK-SKDWKIERMSGIDRNIVRLAIFEMKFSSDKLVP-NIAINEAVEL 109

Query: 134 AHDFFYGDEPKFINAVLDKVSR 155
           A  F   D  +F+N +L  + +
Sbjct: 110 AKKFGTDDSARFVNGILGSMIK 131


>gi|94968243|ref|YP_590291.1| NusB antitermination factor [Candidatus Koribacter versatilis
           Ellin345]
 gi|119372272|sp|Q1ISD3|NUSB_ACIBL RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|94550293|gb|ABF40217.1| NusB antitermination factor [Candidatus Koribacter versatilis
           Ellin345]
          Length = 146

 Score =  142 bits (358), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 39/151 (25%), Positives = 65/151 (43%), Gaps = 11/151 (7%)

Query: 12  LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71
            +  R  +R  A+Q L+Q+D+   S   +   +   R   + E+            +   
Sbjct: 4   KTGTRRKSRELALQMLFQMDMGKQSADHVEKTFWAERKDLEEEVR----------SFAID 53

Query: 72  IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
           + H    R + ID LI     E W   R+  +  +ILR    E +     P  V+I+E +
Sbjct: 54  LFHVAEKRSEEIDKLIEKH-AEHWRMERMAAVDRNILRGACAEFMGFPKTPKPVVINESL 112

Query: 132 CIAHDFFYGDEPKFINAVLDKVSRKEEIKRS 162
            IA  F   +  +FIN VLD V+R+ + +R 
Sbjct: 113 EIARRFSSPESVQFINGVLDSVARELDAERK 143


>gi|94991121|ref|YP_599221.1| transcription antitermination protein NusB [Streptococcus pyogenes
           MGAS10270]
 gi|94544629|gb|ABF34677.1| N utilization substance protein B [Streptococcus pyogenes
           MGAS10270]
          Length = 156

 Score =  142 bits (358), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 35/143 (24%), Positives = 69/143 (48%), Gaps = 6/143 (4%)

Query: 14  HRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVII 73
           + R   R  A QAL+ I++      E+++    + +  D     ++  L + + +   ++
Sbjct: 13  NSRRDLRERAFQALFNIEMG----AELLAA-SQFAYGYDKVTREDAQVLELPI-FLLSLV 66

Query: 74  HGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCI 133
            GV + K+ +D LIS+ L + WS  RL +   ++LR G+ E+      P  V ++E + +
Sbjct: 67  TGVNNHKEELDNLISTHLKKGWSLERLTLTDKTLLRLGLFEIKYFDETPDRVALNEIIEV 126

Query: 134 AHDFFYGDEPKFINAVLDKVSRK 156
           A  +      KFIN +L +   +
Sbjct: 127 AKKYSDETSAKFINGLLSQYVSE 149


>gi|295106070|emb|CBL03613.1| transcription antitermination factor NusB [Gordonibacter pamelaeae
           7-10-1-b]
          Length = 160

 Score =  142 bits (358), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 42/158 (26%), Positives = 73/158 (46%), Gaps = 14/158 (8%)

Query: 12  LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71
             H R  AR +A+  LY  +I     T+I  E        D  L           ++   
Sbjct: 4   KRHERTRARRSALALLYTSEITDEGATKIAEE--GRYLAEDGPLP----------DYATA 51

Query: 72  IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
           ++ GV   +  ID  ++   +E W+ +R+ ++  SILR    E++    VP  V I+E V
Sbjct: 52  LVRGVEAHRVAIDKHLA-ATSENWALARMPIVDRSILRLATYEMMYVDDVPTSVTINEAV 110

Query: 132 CIAHDFFYGD-EPKFINAVLDKVSRKEEIKRSGCVSAI 168
            +A DF   D  P+F+N VL ++++  + +++   SA 
Sbjct: 111 ELAKDFGGEDESPRFVNGVLGRIAKILDEEKAAPKSAP 148


>gi|119390835|sp|Q1JF82|NUSB_STRPD RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
          Length = 150

 Score =  141 bits (357), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 35/143 (24%), Positives = 69/143 (48%), Gaps = 6/143 (4%)

Query: 14  HRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVII 73
           + R   R  A QAL+ I++      E+++    + +  D     ++  L + + +   ++
Sbjct: 7   NSRRDLRERAFQALFNIEMG----AELLAA-SQFAYGYDKVTREDAQVLELPI-FLLSLV 60

Query: 74  HGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCI 133
            GV + K+ +D LIS+ L + WS  RL +   ++LR G+ E+      P  V ++E + +
Sbjct: 61  TGVNNHKEELDNLISTHLKKGWSLERLTLTDKTLLRLGLFEIKYFDETPDRVALNEIIEV 120

Query: 134 AHDFFYGDEPKFINAVLDKVSRK 156
           A  +      KFIN +L +   +
Sbjct: 121 AKKYSDETSAKFINGLLSQYVSE 143


>gi|302389868|ref|YP_003825689.1| NusB antitermination factor [Thermosediminibacter oceani DSM 16646]
 gi|302200496|gb|ADL08066.1| NusB antitermination factor [Thermosediminibacter oceani DSM 16646]
          Length = 154

 Score =  141 bits (357), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 38/146 (26%), Positives = 64/146 (43%), Gaps = 13/146 (8%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           R +AR    + L+ ID  G +  E +          D              E+    ++G
Sbjct: 17  RKLAREWCFKILFAIDAGGNTIDEAMKITVNKPLNEDI------------REFMLKEVNG 64

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
           V+++K+ ID +I       W   RL++   +I+R  + E+     +P+ V I+E V IA 
Sbjct: 65  VLEKKECIDEIIDEYCV-DWELERLNIADRNIMRLAIYEIFFSDDIPLSVSINEAVEIAK 123

Query: 136 DFFYGDEPKFINAVLDKVSRKEEIKR 161
            +     PKF+N VL  ++R  E  R
Sbjct: 124 KYGDEKSPKFVNGVLGAIARDREKLR 149


>gi|91774848|ref|YP_544604.1| NusB antitermination factor [Methylobacillus flagellatus KT]
 gi|119390784|sp|Q1H424|NUSB_METFK RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|91708835|gb|ABE48763.1| NusB antitermination factor [Methylobacillus flagellatus KT]
          Length = 154

 Score =  141 bits (357), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 42/165 (25%), Positives = 71/165 (43%), Gaps = 16/165 (9%)

Query: 1   MTIQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESV 60
           M  +  K   K    R  +R   ++ +Y   +    T+ II E              +  
Sbjct: 1   MPAEAKKPAPKAGRSRRKSRELVLKGIYLGLMNQKDTSVIIRELAD-----------DPD 49

Query: 61  YLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHS 120
           +   D E+FR ++ GV +    +D  ++  L  +   S L  I  +IL     ELI   +
Sbjct: 50  FDRADYEYFRQLLEGVAESIDELDARLAGLLDRQ--VSELSPIEHAILCIAAYELIHDVT 107

Query: 121 VPVEVIISEYVCIAHDFFYGDEPKFINAVLDKV---SRKEEIKRS 162
           +P  V I+E V +A  +   D  K++N VLDK+   +R +E +R 
Sbjct: 108 IPYRVAINEGVELAKLYGGTDGHKYVNGVLDKIAAEARPDEFQRG 152


>gi|84688074|ref|ZP_01015933.1| putative N utilization substance protein B [Maritimibacter
           alkaliphilus HTCC2654]
 gi|84663924|gb|EAQ10429.1| putative N utilization substance protein B [Rhodobacterales
           bacterium HTCC2654]
          Length = 168

 Score =  141 bits (357), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 56/166 (33%), Positives = 87/166 (52%), Gaps = 11/166 (6%)

Query: 2   TIQDN---KKDLKLSHRRG---IARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTEL 55
           T QD    K+ +    +R     +RL AVQAL+Q++  G     +  E+E +RF A    
Sbjct: 5   TPQDTDRPKRKMTPELKRRMKSASRLYAVQALFQMEAAGQGYDRVRKEFEDHRFGA---E 61

Query: 56  DVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLEL 115
             E  +   +++ FR I+   +DR+  ID +    L  KW  +R+D  L ++ RA   EL
Sbjct: 62  YEEGEFEEGNVDLFRAILGEAVDRQAKIDQMTDRALVAKWPIARIDPTLRALFRAAGAEL 121

Query: 116 IECHSVPVEVIISEYVCIAHDFF-YGDEPKFINAVLDKVSRKEEIK 160
           +     P +V+I E+V +A  FF  G EPKF NAVLD ++R+   +
Sbjct: 122 V-LGDTPPKVVIVEFVEVAKAFFPEGHEPKFTNAVLDHMAREARPE 166


>gi|88811151|ref|ZP_01126407.1| transcription antitermination protein NusB [Nitrococcus mobilis
           Nb-231]
 gi|88791690|gb|EAR22801.1| transcription antitermination protein NusB [Nitrococcus mobilis
           Nb-231]
          Length = 157

 Score =  141 bits (357), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 42/144 (29%), Positives = 66/144 (45%), Gaps = 18/144 (12%)

Query: 23  AVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQH 82
            +QALYQ  +    + EI  ++             E    HVDLE+F  +++ +  R   
Sbjct: 21  VLQALYQWQLTAQDSAEIERQFLE-----------EHNMAHVDLEYFAELLYEIPARLAS 69

Query: 83  IDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDE 142
           +D LI   L      + +D +  +ILR G  EL +   +P  V+++E V +A  F     
Sbjct: 70  LDALIEPALDR--PLAVIDPVEKAILRMGTYELTQRLDIPYRVVVNEAVDLARLFGAEQS 127

Query: 143 PKFINAVLDKVS-----RKEEIKR 161
            ++IN VLD+V      R  EI R
Sbjct: 128 HRYINGVLDRVGHHTPLRAAEIGR 151


>gi|329119641|ref|ZP_08248322.1| transcription antitermination factor NusB [Neisseria bacilliformis
           ATCC BAA-1200]
 gi|327464238|gb|EGF10542.1| transcription antitermination factor NusB [Neisseria bacilliformis
           ATCC BAA-1200]
          Length = 142

 Score =  141 bits (357), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 42/155 (27%), Positives = 63/155 (40%), Gaps = 17/155 (10%)

Query: 10  LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF 69
           +K S RR  AR  AVQALYQ  + G S  ++              +   S Y   D E F
Sbjct: 1   MKTSPRRR-AREFAVQALYQCALNGASAVQVA-----------QNIREASDYPRADGELF 48

Query: 70  RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISE 129
             +  G  D        I   L        ++ +  +IL     EL      P  VII+E
Sbjct: 49  TALFFGAHDNGGEYMQRIRPLLDRDEK--DINPVERAILLMACHELAAMPETPYPVIINE 106

Query: 130 YVCIAHDFFYGDEPKFINAVLDKVS---RKEEIKR 161
            + +   +   D  KF+N +LD+++   R ++ KR
Sbjct: 107 AIEVTKTYGGTDSHKFVNGILDRLAAELRPDDPKR 141


>gi|332530152|ref|ZP_08406101.1| NusB antitermination factor [Hylemonella gracilis ATCC 19624]
 gi|332040422|gb|EGI76799.1| NusB antitermination factor [Hylemonella gracilis ATCC 19624]
          Length = 187

 Score =  141 bits (357), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 41/168 (24%), Positives = 70/168 (41%), Gaps = 16/168 (9%)

Query: 6   NKKDLKLSHR---RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYL 62
            K   K S     R  +R  A+QALYQ  +   +T +I           D      + + 
Sbjct: 31  GKAANKPSRALSGRSRSREFALQALYQHLVGRNATADI-----------DAFTRDLTGFH 79

Query: 63  HVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVP 122
             D   +  ++HG ++  + +D LI   L  K   + +  I  +I+  G  E   C  VP
Sbjct: 80  KADAAHYDALLHGCVNEAEALDRLILPLLDRK--LAEISPIERAIMWMGAYEFQHCVDVP 137

Query: 123 VEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRSGCVSAITQ 170
             V+++EY+ +A  F   D  K++NAVL+ ++            A  +
Sbjct: 138 WRVVLNEYIELAKSFGGTDGHKYVNAVLNGLAPTLRAAEVAADKASGK 185


>gi|189424280|ref|YP_001951457.1| NusB antitermination factor [Geobacter lovleyi SZ]
 gi|238692133|sp|B3E757|NUSB_GEOLS RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|189420539|gb|ACD94937.1| NusB antitermination factor [Geobacter lovleyi SZ]
          Length = 142

 Score =  141 bits (356), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 34/138 (24%), Positives = 65/138 (47%), Gaps = 12/138 (8%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           R  AR  A+Q LY  D +  S  + +  +       +              E+   ++ G
Sbjct: 4   RREARELALQMLYAQDTLQGSLRDTLRGFREGVETGERT-----------REFAEALVQG 52

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
           VM+ ++ ID  I +  ++ W+ SR+  +  +I+R    EL+    +P +V I+E + IA 
Sbjct: 53  VMEHREAIDQAIVAR-SKNWALSRMPRVDLNIMRMAAYELMFKRDIPKKVSINEAIEIAK 111

Query: 136 DFFYGDEPKFINAVLDKV 153
            +   + P F+N +LD++
Sbjct: 112 KYGDKESPAFVNGILDEL 129


>gi|297616617|ref|YP_003701776.1| NusB antitermination factor [Syntrophothermus lipocalidus DSM
           12680]
 gi|297144454|gb|ADI01211.1| NusB antitermination factor [Syntrophothermus lipocalidus DSM
           12680]
          Length = 138

 Score =  141 bits (356), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 36/142 (25%), Positives = 69/142 (48%), Gaps = 13/142 (9%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           R +AR  A + L+Q+D+ G S  + +             L  E+      L + R ++  
Sbjct: 3   RSLARETAFKVLFQVDLAGASPRDAL-----------QHLTAETPLADRYLAFARELVDK 51

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
            ++  + ID  IS   + +WS SR+  +  +I+R  V E++    +   V+I+E V +A 
Sbjct: 52  TLEHVKTIDSYISKY-SPEWSISRMATVDRNIMRMAVCEMLYT-EIDPVVVINEAVELAK 109

Query: 136 DFFYGDEPKFINAVLDKVSRKE 157
            +   +   FINA+LD++  ++
Sbjct: 110 KYGDENSSSFINAILDRIMGEK 131


>gi|296129685|ref|YP_003636935.1| NusB antitermination factor [Cellulomonas flavigena DSM 20109]
 gi|296021500|gb|ADG74736.1| NusB antitermination factor [Cellulomonas flavigena DSM 20109]
          Length = 138

 Score =  141 bits (356), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 30/139 (21%), Positives = 65/139 (46%), Gaps = 12/139 (8%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           R  AR  A+  L++ +  G    E++++             VE        ++   ++ G
Sbjct: 4   RTKARKRALDVLFEAEQRGLDVAELLAKRV-----------VEPGTEASLPQYAVELVEG 52

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
           V++  + ID L+++  +  W+ +R+  +  ++LR G  E++    VP  V + E V +A 
Sbjct: 53  VLEHAERIDELLATH-SHGWTVARMPAVDRALLRLGAWEILWNDDVPDAVAVDEAVSLAR 111

Query: 136 DFFYGDEPKFINAVLDKVS 154
           +    + P F+N +L ++ 
Sbjct: 112 ELSTDESPAFVNGLLGRLV 130


>gi|94995000|ref|YP_603098.1| transcription antitermination protein NusB [Streptococcus pyogenes
           MGAS10750]
 gi|94548508|gb|ABF38554.1| N utilization substance protein B [Streptococcus pyogenes
           MGAS10750]
          Length = 156

 Score =  141 bits (356), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 35/143 (24%), Positives = 69/143 (48%), Gaps = 6/143 (4%)

Query: 14  HRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVII 73
           + R   R  A QAL+ I++      E+++    + +  D     ++  L + + +   ++
Sbjct: 13  NSRRDLRERAFQALFNIEMG----AELLAA-SQFAYGYDKVTGEDAQVLELPI-FLLSLV 66

Query: 74  HGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCI 133
            GV + K+ +D LIS+ L + WS  RL +   ++LR G+ E+      P  V ++E + +
Sbjct: 67  MGVNNHKEELDNLISTHLKKGWSLERLTLTDKTLLRLGLFEIKYFDETPDRVALNEIIEV 126

Query: 134 AHDFFYGDEPKFINAVLDKVSRK 156
           A  +      KFIN +L +   +
Sbjct: 127 AKKYSDETSAKFINGLLSQYVSE 149


>gi|78188395|ref|YP_378733.1| NusB antitermination factor [Chlorobium chlorochromatii CaD3]
 gi|119390755|sp|Q3ATI5|NUSB_CHLCH RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|78170594|gb|ABB27690.1| NusB antitermination factor [Chlorobium chlorochromatii CaD3]
          Length = 169

 Score =  141 bits (356), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 40/153 (26%), Positives = 70/153 (45%), Gaps = 14/153 (9%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           R   R   +QALY +++ G +  E      T    AD             +++F +++  
Sbjct: 5   RRQIREKILQALYTVELRGITLDEAAGWLLTEEILADPNA----------MKFFNLLLSS 54

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
           +   ++ ID  I+   T  W  SR+ +I  +I+R  + E++ C  +P +V I+E + IA 
Sbjct: 55  IKAHREEIDNYIAQQ-TFNWDMSRIAIIDKNIIRMALTEILYCEDIPPKVSINEAIEIAK 113

Query: 136 DF-FYGDEPKFINAVLDKVSRKEEIKRSGCVSA 167
            F       KF+N +LD +  K  +K  G V  
Sbjct: 114 KFNSTDKSSKFVNGILDAIFNK--LKTEGKVHK 144


>gi|227510480|ref|ZP_03940529.1| transcription antitermination protein NusB [Lactobacillus brevis
           subsp. gravesensis ATCC 27305]
 gi|227513489|ref|ZP_03943538.1| transcription antitermination protein NusB [Lactobacillus buchneri
           ATCC 11577]
 gi|227524631|ref|ZP_03954680.1| transcription antitermination protein NusB [Lactobacillus hilgardii
           ATCC 8290]
 gi|227083362|gb|EEI18674.1| transcription antitermination protein NusB [Lactobacillus buchneri
           ATCC 11577]
 gi|227088115|gb|EEI23427.1| transcription antitermination protein NusB [Lactobacillus hilgardii
           ATCC 8290]
 gi|227190132|gb|EEI70199.1| transcription antitermination protein NusB [Lactobacillus brevis
           subsp. gravesensis ATCC 27305]
          Length = 137

 Score =  141 bits (356), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 32/141 (22%), Positives = 57/141 (40%), Gaps = 11/141 (7%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           R   R  A Q L+ ++    +  E   E  T           +  Y     ++   +  G
Sbjct: 5   RHQIREIAFQTLFALNANKQTNKENFFEVLT-----------DGKYGDEYPKYLDELTTG 53

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
           V+D K+ +D LI   L   WS +R+      IL   + E++    +P +V I+E + +A 
Sbjct: 54  VVDHKEELDNLIEKYLKSGWSINRIAKTDLIILEIALYEMLHVDDLPAKVSINEAIELAK 113

Query: 136 DFFYGDEPKFINAVLDKVSRK 156
            +      KF+N +L     +
Sbjct: 114 KYSDDRSRKFVNGILSHALEE 134


>gi|303327268|ref|ZP_07357710.1| transcription antitermination factor NusB [Desulfovibrio sp.
           3_1_syn3]
 gi|302863256|gb|EFL86188.1| transcription antitermination factor NusB [Desulfovibrio sp.
           3_1_syn3]
          Length = 163

 Score =  141 bits (356), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 31/146 (21%), Positives = 55/146 (37%), Gaps = 3/146 (2%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           R  AR  A Q LY +      +   +     +          E         +   ++ G
Sbjct: 9   RRGARELAFQVLYGLSFTPAESRADLR--RAFVLSPHNTAMDEQDLGSEPTGFAWELVEG 66

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
           V      +D  IS   +  W   R+  I  ++LR  V E++    VP +V I+E + ++ 
Sbjct: 67  VWGNSAALDTAISRF-SHNWRVDRMGRIELTLLRLAVFEMLYRQDVPPKVAINEALELSG 125

Query: 136 DFFYGDEPKFINAVLDKVSRKEEIKR 161
            F   +   F+N +LD  ++  E   
Sbjct: 126 QFGEDNAKNFVNGILDAAAKALESGE 151


>gi|262280550|ref|ZP_06058334.1| transcription termination L factor [Acinetobacter calcoaceticus
           RUH2202]
 gi|262258328|gb|EEY77062.1| transcription termination L factor [Acinetobacter calcoaceticus
           RUH2202]
          Length = 149

 Score =  141 bits (356), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 37/139 (26%), Positives = 63/139 (45%), Gaps = 13/139 (9%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           +  AR  AVQ +Y+  +      EI +               E+    VDL ++  ++  
Sbjct: 12  KRKARRFAVQGIYEWQMSHNPVHEIEA-----------RTRAENAMHKVDLNYYHELLTQ 60

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
           V+ ++  +D L+   L  +     LD +  + LR G  EL +   VP  V++ E + +A 
Sbjct: 61  VIAQRDDLDALLIPVLDRE--LDALDGVELATLRLGAYELRDHLEVPYRVVLDEAIELAK 118

Query: 136 DFFYGDEPKFINAVLDKVS 154
            F   D  K+IN VLD++S
Sbjct: 119 HFGGADSHKYINGVLDRLS 137


>gi|83593156|ref|YP_426908.1| NusB antitermination factor [Rhodospirillum rubrum ATCC 11170]
 gi|119390811|sp|Q2RTC4|NUSB_RHORT RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|83576070|gb|ABC22621.1| NusB antitermination factor [Rhodospirillum rubrum ATCC 11170]
          Length = 185

 Score =  141 bits (356), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 58/182 (31%), Positives = 89/182 (48%), Gaps = 19/182 (10%)

Query: 1   MTIQDNKKDLKLSHR-----RG-IARLAAVQALYQIDII-GCSTTEIISEYETYRFC--- 50
           M +QD+K       R     R   ARLAAVQALY +D+       +++ ++ +       
Sbjct: 1   MALQDDKPGSAPKERSGRQIRSSAARLAAVQALYVLDLAEDARVDQVVLDFMSGSMGGMA 60

Query: 51  ----ADTEL-----DVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLD 101
               AD E      +  +     D E F +++ G       +D +I + L+  W + RL+
Sbjct: 61  IVEVADPEGIFDPTEEIAALEPPDGELFAMLVRGAHAELARLDEVIGASLSADWPWDRLE 120

Query: 102 MILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKR 161
            ++ ++LRAGV EL+E    P  V I EYV IA  F+ G EP  +NAVLD+V+R    + 
Sbjct: 121 PVVRAVLRAGVYELLERQRTPPRVAIKEYVDIAAAFYSGAEPGMVNAVLDRVARSARPEA 180

Query: 162 SG 163
            G
Sbjct: 181 FG 182


>gi|21674526|ref|NP_662591.1| N utilization substance protein B [Chlorobium tepidum TLS]
 gi|28201843|sp|Q8KBS4|NUSB_CHLTE RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|21647719|gb|AAM72933.1| N utilization substance protein B [Chlorobium tepidum TLS]
          Length = 164

 Score =  141 bits (356), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 37/153 (24%), Positives = 68/153 (44%), Gaps = 14/153 (9%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           R   R   +QALY +++    T    +   T     D             +++F  ++  
Sbjct: 5   RRQLREKIIQALYTLELRDVDTDSAANWLLTKEIMDDPNA----------MKFFNHLMQS 54

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
           ++  ++ ID  I+   T  W  SR+ +I  +ILR  + E++ C  +P +V I+E + IA 
Sbjct: 55  IVRNREEIDRYIAKH-TFNWDMSRIAIIDKNILRMALAEILYCEDIPPKVSINEAIEIAK 113

Query: 136 DF-FYGDEPKFINAVLDKVSRKEEIKRSGCVSA 167
            F       KF+N +LD +    ++K  G +  
Sbjct: 114 KFSSTDKSSKFVNGILDAIF--NDMKAEGRIKK 144


>gi|195977499|ref|YP_002122743.1| transcription antitermination protein NusB [Streptococcus equi
           subsp. zooepidemicus MGCS10565]
 gi|195974204|gb|ACG61730.1| N utilization substance protein B-like NusB [Streptococcus equi
           subsp. zooepidemicus MGCS10565]
          Length = 139

 Score =  141 bits (356), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 37/141 (26%), Positives = 64/141 (45%), Gaps = 8/141 (5%)

Query: 20  RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLE-WFRVIIHGVMD 78
           R  A QAL+ +++ G             +F  D + +V       +L  +   +++GVMD
Sbjct: 2   RERAFQALFTMEMGGDFL-------LASQFAYDYDKEVADDKQPSELPVFLLNLVNGVMD 54

Query: 79  RKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFF 138
            K  +D +I   L   WS  RL ++  ++LR G+ E+      P  V ++E + IA  + 
Sbjct: 55  HKAELDEVIKKNLKAGWSIERLTVVDKTMLRLGLFEMTLFEETPDRVALNEIIEIAKKYS 114

Query: 139 YGDEPKFINAVLDKVSRKEEI 159
                KFIN +L +    E +
Sbjct: 115 DDTSAKFINGLLSQFVSDESV 135


>gi|326382154|ref|ZP_08203846.1| transcription antitermination protein NusB [Gordonia neofelifaecis
           NRRL B-59395]
 gi|326198884|gb|EGD56066.1| transcription antitermination protein NusB [Gordonia neofelifaecis
           NRRL B-59395]
          Length = 149

 Score =  141 bits (356), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 40/145 (27%), Positives = 67/145 (46%), Gaps = 9/145 (6%)

Query: 10  LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF 69
           +K    R  AR  AV  L++ +      T++I+E        D+   +         ++ 
Sbjct: 1   MKKPGTRHKARKRAVDLLFEAEAKNVKATQLIAERREIYPSDDSVGTM--------YDYT 52

Query: 70  RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISE 129
             ++ GV      +D +I S L E W   RL  +  +ILR  V EL+  + V ++V++ E
Sbjct: 53  VRVVEGVTVDASQVDAVIESHL-ENWKLHRLPAVDRAILRLAVWELLYANDVDIDVVLDE 111

Query: 130 YVCIAHDFFYGDEPKFINAVLDKVS 154
            V +A +    D P F+N VL KV+
Sbjct: 112 AVELAKELSTDDSPSFVNGVLGKVA 136


>gi|149177355|ref|ZP_01855960.1| transcription antitermination protein NusB [Planctomyces maris DSM
           8797]
 gi|148843880|gb|EDL58238.1| transcription antitermination protein NusB [Planctomyces maris DSM
           8797]
          Length = 171

 Score =  141 bits (356), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 44/144 (30%), Positives = 66/144 (45%), Gaps = 15/144 (10%)

Query: 16  RGIARLAAVQALYQIDII-GCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74
           R  AR   VQ LYQID+    S  EI             E+  E         +   +  
Sbjct: 4   RKQARFLVVQMLYQIDLNPDISINEI------------REMIEEHGRNKTARTFAWELFT 51

Query: 75  GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134
           GVM+ KQ +D  I   + E W+  R+ +   +ILR G  EL+     P  V+I E V +A
Sbjct: 52  GVMEFKQQLDEHIVR-VAENWTLKRMAVTDRNILRLGTYELLHT-DTPPAVVIDEAVELA 109

Query: 135 HDFFYGDEPKFINAVLDKVSRKEE 158
            +F      +F+N +LDKV ++++
Sbjct: 110 REFGSAHSSQFVNGILDKVVQRKD 133


>gi|57233932|ref|YP_181990.1| N utilization substance protein B [Dehalococcoides ethenogenes 195]
 gi|119390764|sp|Q3Z709|NUSB_DEHE1 RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|57224380|gb|AAW39437.1| N utilization substance protein B [Dehalococcoides ethenogenes 195]
          Length = 143

 Score =  141 bits (356), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 37/144 (25%), Positives = 67/144 (46%), Gaps = 12/144 (8%)

Query: 12  LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71
           ++  R  AR   +QALY+ D+ G +  +++    T           E+     + E+   
Sbjct: 1   MTTSRRKAREIVLQALYEQDLAGHNAEDVLKRLLT-----------ETPQTEENAEFIFR 49

Query: 72  IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
           + + ++  K  +D  I    +  W   +L  I  ++LR  + E+I  + VP++V I+E V
Sbjct: 50  LTNAIVKHKDLLDENIRQFASA-WPVEQLSYIDRNVLRLAIFEIIHENDVPIKVAINEAV 108

Query: 132 CIAHDFFYGDEPKFINAVLDKVSR 155
            +A  F      +FIN VL  VS+
Sbjct: 109 ELAKSFGGNSSARFINGVLSSVSK 132


>gi|119390836|sp|Q1J532|NUSB_STRPF RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
          Length = 150

 Score =  141 bits (356), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 35/143 (24%), Positives = 69/143 (48%), Gaps = 6/143 (4%)

Query: 14  HRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVII 73
           + R   R  A QAL+ I++      E+++    + +  D     ++  L + + +   ++
Sbjct: 7   NSRRDLRERAFQALFNIEMG----AELLAA-SQFAYGYDKVTGEDAQVLELPI-FLLSLV 60

Query: 74  HGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCI 133
            GV + K+ +D LIS+ L + WS  RL +   ++LR G+ E+      P  V ++E + +
Sbjct: 61  MGVNNHKEELDNLISTHLKKGWSLERLTLTDKTLLRLGLFEIKYFDETPDRVALNEIIEV 120

Query: 134 AHDFFYGDEPKFINAVLDKVSRK 156
           A  +      KFIN +L +   +
Sbjct: 121 AKKYSDETSAKFINGLLSQYVSE 143


>gi|189219673|ref|YP_001940314.1| transcription termination protein NusB [Methylacidiphilum
           infernorum V4]
 gi|259514863|sp|B3DWQ3|NUSB_METI4 RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|189186531|gb|ACD83716.1| Transcription termination protein NusB [Methylacidiphilum
           infernorum V4]
          Length = 143

 Score =  141 bits (355), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 34/142 (23%), Positives = 61/142 (42%), Gaps = 13/142 (9%)

Query: 16  RGIARLAAVQALYQIDII-GCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74
           R   R   VQ LYQ ++  G     ++ ++  +      + +    +L            
Sbjct: 4   RRKIRELIVQFLYQWEMNKGVGLDNMLLDFWDFSPLDQKDKEAVEQWLKE---------- 53

Query: 75  GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134
            + + K+ I+  I+S   + WS  RL  +   IL  G+ E++    +P  V I+E V IA
Sbjct: 54  -IAEHKEAIEEKINSY-VKNWSLDRLAPVDKCILILGIYEILYRKDIPPAVSINESVEIA 111

Query: 135 HDFFYGDEPKFINAVLDKVSRK 156
             +   +  KF+N +LD V + 
Sbjct: 112 KKYSTEESGKFVNGILDSVLKD 133


>gi|194290431|ref|YP_002006338.1| transcription antitermination protein nusb [Cupriavidus taiwanensis
           LMG 19424]
 gi|193224266|emb|CAQ70275.1| antitermination factor (N UTILIZATION SUBSTANCE B) (TRANSCRIPTIONAL
           ANTITERMINATOR) [Cupriavidus taiwanensis LMG 19424]
          Length = 172

 Score =  141 bits (355), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 35/151 (23%), Positives = 60/151 (39%), Gaps = 15/151 (9%)

Query: 4   QDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLH 63
            + K   K + RR   R  A+Q LYQ  +       I +                  +  
Sbjct: 25  TEAKAPPKSARRRS--RELALQGLYQWLLNRNDIGAIQAHLHD-----------AQGFNK 71

Query: 64  VDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPV 123
            D E F  +++G +  +  +       L    S   L  +  + L  G  EL+ C  +P 
Sbjct: 72  ADREHFDALLNGAVREEARLTAAFEPFLDR--SVDELSPVERAALLVGSYELVHCLDIPY 129

Query: 124 EVIISEYVCIAHDFFYGDEPKFINAVLDKVS 154
           +V+I+E V +   F   +  K++N VLDK++
Sbjct: 130 KVVINEAVELTKTFGGVEGYKYVNGVLDKLA 160


>gi|114319541|ref|YP_741224.1| NusB antitermination factor [Alkalilimnicola ehrlichii MLHE-1]
 gi|119372274|sp|Q0ABQ3|NUSB_ALHEH RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|114225935|gb|ABI55734.1| NusB antitermination factor [Alkalilimnicola ehrlichii MLHE-1]
          Length = 178

 Score =  141 bits (355), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 38/141 (26%), Positives = 61/141 (43%), Gaps = 8/141 (5%)

Query: 28  YQIDIIGCSTTEIISEYETYR------FCADTELDVESVYLHVDLEWFRVIIHGVMDRKQ 81
           YQ  + G     I +++             D E      +  +D  +FR ++HGV  R  
Sbjct: 29  YQWQMTGQDLGAIEAQHLEIDPEEPPVEAGDDEHYPRYPHDGLDRPYFRALLHGVPARLN 88

Query: 82  HIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGD 141
            +D  +   L        LD +  ++LR G  EL E    P  VII+E V +A  F    
Sbjct: 89  DLDQALEPLLDR--PLRTLDPLEKALLRLGAWELSERMDTPWRVIINEAVNLAKRFGAEQ 146

Query: 142 EPKFINAVLDKVSRKEEIKRS 162
             ++IN VLDK++R   ++ +
Sbjct: 147 SHRYINGVLDKLARGLPLRAT 167


>gi|121611696|ref|YP_999503.1| NusB antitermination factor [Verminephrobacter eiseniae EF01-2]
 gi|121556336|gb|ABM60485.1| NusB antitermination factor [Verminephrobacter eiseniae EF01-2]
          Length = 176

 Score =  141 bits (355), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 37/154 (24%), Positives = 64/154 (41%), Gaps = 13/154 (8%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           R  AR  A+QALYQ  + G    +I           D      + +   D   ++ ++HG
Sbjct: 34  RSRAREFALQALYQHLVGGNDAADI-----------DEFTRGLAGFHKADAAHYQTLLHG 82

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
            +     ID LI   L  +     +  I  + +  GV E   C  VP  V+++E + +A 
Sbjct: 83  CIGAAADIDALIVPLLDRQ--LIAISPIERATMWIGVYEFQHCPDVPWRVVLNECIELAK 140

Query: 136 DFFYGDEPKFINAVLDKVSRKEEIKRSGCVSAIT 169
           +F   D  K++NA+L+ ++ +          A  
Sbjct: 141 EFGGTDGHKYVNAMLNALAPRLRAAEVAADRARA 174


>gi|221065986|ref|ZP_03542091.1| NusB antitermination factor [Comamonas testosteroni KF-1]
 gi|220711009|gb|EED66377.1| NusB antitermination factor [Comamonas testosteroni KF-1]
          Length = 178

 Score =  141 bits (355), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 38/159 (23%), Positives = 71/159 (44%), Gaps = 14/159 (8%)

Query: 1   MTIQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESV 60
           +T    +K    S+ R  AR  A+Q LYQ  +   +  +I       RF  D      + 
Sbjct: 21  LTSTGARKAGSKSN-RSRAREFALQGLYQHIVGRNAVLDI------DRFTRDL-----AG 68

Query: 61  YLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHS 120
           +   D+  +  ++ G ++ +  +D LI+  L      + +  I  + +  GV E   C  
Sbjct: 69  FHKADVVHYDALLRGCVENEVSLDALITPKLDRG--LTEISPIEHACMWIGVYEFQNCPD 126

Query: 121 VPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEI 159
           VP  V+++E + +A +F   D  K++NAVL+ ++     
Sbjct: 127 VPWRVVLNECIELAKEFGGTDGHKYVNAVLNGLAPDLRA 165


>gi|119384293|ref|YP_915349.1| NusB antitermination factor [Paracoccus denitrificans PD1222]
 gi|119374060|gb|ABL69653.1| NusB antitermination factor [Paracoccus denitrificans PD1222]
          Length = 166

 Score =  141 bits (355), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 48/141 (34%), Positives = 73/141 (51%), Gaps = 3/141 (2%)

Query: 21  LAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRK 80
           L AVQAL+Q++  G S   +  E+  +R   + E D + V    D   F  I+   +  +
Sbjct: 26  LYAVQALFQMEAAGQSADRVQREFLNWRIGREDE-DDDIVSAEADQALFTRIVDDAVTWQ 84

Query: 81  QHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYG 140
             ID +    L  KW   R+D +L S+ RA   EL+     P +V+I+EYV +A  FF  
Sbjct: 85  SKIDQMTDRALVAKWPIDRIDPVLRSVFRAAGAELV-TPKTPPKVVITEYVRLAQTFFAE 143

Query: 141 -DEPKFINAVLDKVSRKEEIK 160
             E KF+NAVLD ++R+   +
Sbjct: 144 GRESKFVNAVLDHMAREARPE 164


>gi|255524173|ref|ZP_05391133.1| NusB antitermination factor [Clostridium carboxidivorans P7]
 gi|296186630|ref|ZP_06855032.1| transcription antitermination factor NusB [Clostridium
           carboxidivorans P7]
 gi|255512158|gb|EET88438.1| NusB antitermination factor [Clostridium carboxidivorans P7]
 gi|296048667|gb|EFG88099.1| transcription antitermination factor NusB [Clostridium
           carboxidivorans P7]
          Length = 155

 Score =  141 bits (355), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 36/155 (23%), Positives = 70/155 (45%), Gaps = 13/155 (8%)

Query: 15  RRGIARLAAVQALYQIDIIGCSTTEIIS-----------EYETYRFCADTELDVESVYLH 63
            R  +R   ++ L+Q+ I      ++++           E +        E+D E++ L 
Sbjct: 2   NRRKSRELVMKLLFQMTINKEDFKDVVANLKENIELDKSELQITGIEGKNEIDPENIDLK 61

Query: 64  -VDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVP 122
            +D+E+   ++ GV + K+ ID  I   L   W  +RL  +  +ILR    E +   ++P
Sbjct: 62  DIDMEYVIRVLKGVQENKESIDSAIEKHLI-NWKLNRLSKLDVAILRVCTYEFLYEDNIP 120

Query: 123 VEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKE 157
             V I+E + +A  +       FIN VL  + +++
Sbjct: 121 KNVSINEAIELAKRYSGDKSAAFINGVLGSMIKEK 155


>gi|261365604|ref|ZP_05978487.1| transcription antitermination factor NusB [Neisseria mucosa ATCC
           25996]
 gi|288565933|gb|EFC87493.1| transcription antitermination factor NusB [Neisseria mucosa ATCC
           25996]
          Length = 143

 Score =  141 bits (355), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 42/156 (26%), Positives = 58/156 (37%), Gaps = 18/156 (11%)

Query: 10  LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF 69
           +K   RR  AR  AVQALYQ  I   +  EI              +  +  +   D E F
Sbjct: 1   MKTPRRR--ARELAVQALYQAGINNTAAPEIA-----------KNIQDQPDFAKADEELF 47

Query: 70  RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISE 129
             +  G           I   L        L  I  ++L     EL      P  VII+E
Sbjct: 48  NKLFFGTHTHAAEYIQQIRPLLDRDEK--DLSPIERAVLLMACHELSAMPETPYPVIINE 105

Query: 130 YVCIAHDFFYGDEPKFINAVLDKVS---RKEEIKRS 162
            + +   F   D  KF+N +LDK++   R  + KR 
Sbjct: 106 AIEVTKTFGGTDGHKFVNGILDKLAAQLRPNDPKRG 141


>gi|255066867|ref|ZP_05318722.1| transcription antitermination factor NusB [Neisseria sicca ATCC
           29256]
 gi|255048942|gb|EET44406.1| transcription antitermination factor NusB [Neisseria sicca ATCC
           29256]
          Length = 143

 Score =  141 bits (355), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 42/158 (26%), Positives = 58/158 (36%), Gaps = 18/158 (11%)

Query: 10  LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF 69
           +K   RR  AR  AVQALYQ  I   +  EI              +  +  +   D E F
Sbjct: 1   MKTPRRR--ARELAVQALYQAGINNTAAPEIA-----------KNIQDQPDFAKADEELF 47

Query: 70  RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISE 129
             +  G           I   L        L  I  ++L     EL      P  VII+E
Sbjct: 48  NKLFFGTHTHAAEYIQQIRPLLDRDEK--DLSPIERAVLLMACHELSAMPETPYPVIINE 105

Query: 130 YVCIAHDFFYGDEPKFINAVLDKVS---RKEEIKRSGC 164
            + +   F   D  KF+N +LDK++   R  + KR   
Sbjct: 106 AIEVTKTFGGTDGHKFVNGILDKLAAQLRPNDPKRGNA 143


>gi|320352895|ref|YP_004194234.1| NusB antitermination factor [Desulfobulbus propionicus DSM 2032]
 gi|320121397|gb|ADW16943.1| NusB antitermination factor [Desulfobulbus propionicus DSM 2032]
          Length = 140

 Score =  141 bits (355), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 35/140 (25%), Positives = 65/140 (46%), Gaps = 11/140 (7%)

Query: 16  RGIARLAAVQALYQIDI--IGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVII 73
           R  +R  A+Q L+  D     C+  ++  + + +    D             L + R +I
Sbjct: 4   RRKSRELALQFLFSHDFQERSCAPDDVARDLDMFCQLFDVSQKA--------LPYGRELI 55

Query: 74  HGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCI 133
            G+   ++ ID L+++  +  W   R+ ++  +ILR  V E+  C   P +V I+E + I
Sbjct: 56  LGICRHREEIDALLATH-SHNWRVERMSLVDRNILRIAVFEMRHCDQAPAQVAINEALEI 114

Query: 134 AHDFFYGDEPKFINAVLDKV 153
           A  +  G+   FIN +LD +
Sbjct: 115 AKRYSIGESVSFINGILDAI 134


>gi|258515792|ref|YP_003192014.1| NusB antitermination factor [Desulfotomaculum acetoxidans DSM 771]
 gi|257779497|gb|ACV63391.1| NusB antitermination factor [Desulfotomaculum acetoxidans DSM 771]
          Length = 156

 Score =  141 bits (355), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 34/155 (21%), Positives = 68/155 (43%), Gaps = 13/155 (8%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           R   R  A+Q L+QI++ G    E                  +S      +E+ R ++ G
Sbjct: 3   RREGRQIAMQILFQIEVGGIDPEEAFKNTVA-----------DSTCPVPIMEFARQLVFG 51

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
            +   + ID +IS  +++ W   R+  +  +++R  + E+    ++P+ V  +E + +A 
Sbjct: 52  TLGHLKEIDRVISE-ISKGWRLDRIANVDKTLIRMALYEIFYEDNIPLNVSANEAIELAK 110

Query: 136 DFFYGDEPKFINAVLDKVSRK-EEIKRSGCVSAIT 169
            F   +  KF+N ++ KV +K +E    G      
Sbjct: 111 IFGGEESGKFVNGIIGKVVQKPDEYLTGGAEEKPA 145


>gi|328955583|ref|YP_004372916.1| NusB antitermination factor [Coriobacterium glomerans PW2]
 gi|328455907|gb|AEB07101.1| NusB antitermination factor [Coriobacterium glomerans PW2]
          Length = 198

 Score =  141 bits (355), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 36/153 (23%), Positives = 69/153 (45%), Gaps = 15/153 (9%)

Query: 9   DLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEW 68
            +K++  R +AR  A+Q L+Q + + CS  E++          D  L    +       +
Sbjct: 2   SIKVNRGRTLARSQALQLLFQAEALMCSLDEVLE--------GDYLLSQGPL-----EPY 48

Query: 69  FRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLEL-IECHSVPVEVII 127
              ++ G       ID  +   +++ W  SR+     ++LR  + E+ +    +   V+I
Sbjct: 49  ALELVRGCYAHLDRIDSALC-AVSQNWELSRMPGSDRNLLRLAIYEMRLADEPIEDAVVI 107

Query: 128 SEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIK 160
           +E V IA  +   +   F+N VL ++SR EE+ 
Sbjct: 108 NEAVEIAKAYGTDESAGFVNGVLGEISRAEELP 140


>gi|237749244|ref|ZP_04579724.1| N utilization substance protein B [Oxalobacter formigenes OXCC13]
 gi|229380606|gb|EEO30697.1| N utilization substance protein B [Oxalobacter formigenes OXCC13]
          Length = 156

 Score =  141 bits (355), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 34/155 (21%), Positives = 58/155 (37%), Gaps = 13/155 (8%)

Query: 2   TIQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVY 61
           T   +    K    R  +R  A+Q LY+  +       II             +     +
Sbjct: 3   TTSVHANPSKNRSPRHRSREFALQGLYEWLLNRDDAPVIIE-----------HIRQAHGF 51

Query: 62  LHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSV 121
              D   F  ++ G + +   +   ++  +        L  +  +IL  G  EL     +
Sbjct: 52  DKADTGHFVTLLSGSIHQADKLREELAPHIDR--PLEELSPVEHAILLLGAFELSNHIEI 109

Query: 122 PVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRK 156
           P  V+I+E V +   F   D  KF+N VLDK++ K
Sbjct: 110 PYRVVINEAVELTKSFGGIDGHKFVNGVLDKLAAK 144


>gi|302335896|ref|YP_003801103.1| NusB antitermination factor [Olsenella uli DSM 7084]
 gi|301319736|gb|ADK68223.1| NusB antitermination factor [Olsenella uli DSM 7084]
          Length = 165

 Score =  141 bits (355), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 39/155 (25%), Positives = 71/155 (45%), Gaps = 14/155 (9%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           R +AR  A+Q L+Q +  G S  E++            E D       +D  +   +  G
Sbjct: 10  RTLARSQALQLLFQAEATGRSVFEVL------------EGDYALTQGPLD-PFGESLARG 56

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
           V D +  +D +I+   +  WS SR+  +  ++LR  + E++E   V   + I E V +A 
Sbjct: 57  VDDMRTDLDAIIA-VTSSNWSISRMPSVDRNLLRLALYEMLEVDEVATPIAIDECVELAK 115

Query: 136 DFFYGDEPKFINAVLDKVSRKEEIKRSGCVSAITQ 170
            +   +  +F+N +L +V+ + E+      SA  Q
Sbjct: 116 AYGTAESSRFVNGLLGRVAARLELGEDVISSARAQ 150


>gi|134094270|ref|YP_001099345.1| transcription termination, L factor (N utilization substance
           protein B) [Herminiimonas arsenicoxydans]
 gi|133738173|emb|CAL61218.1| N utilization substance protein B homolog (Protein NusB)
           [Herminiimonas arsenicoxydans]
          Length = 156

 Score =  141 bits (355), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 39/163 (23%), Positives = 67/163 (41%), Gaps = 17/163 (10%)

Query: 1   MTIQ-DNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVES 59
           MT + D+    K    R  AR  A+Q LYQ  +       I           +  +    
Sbjct: 1   MTQKTDHANPSKNRTPRHRAREFALQGLYQWLLNNEDVRTI-----------ENHIRQAH 49

Query: 60  VYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECH 119
            +   D E F  +++G + +   +   ++  +  +   S L  +  + L  G  EL    
Sbjct: 50  GFDKADAEHFDALLYGTVKQVGELRAGLAPLIDRE--ISALSPVEHAALLIGAFELKNHI 107

Query: 120 SVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVS---RKEEI 159
            +P +V+I+E V +   F   D  K++N VLDK +   R+ EI
Sbjct: 108 EIPYKVVINEAVELTKSFGGIDGHKYVNGVLDKFAAGVREPEI 150


>gi|331701511|ref|YP_004398470.1| NusB antitermination factor [Lactobacillus buchneri NRRL B-30929]
 gi|329128854|gb|AEB73407.1| NusB antitermination factor [Lactobacillus buchneri NRRL B-30929]
          Length = 137

 Score =  140 bits (354), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 32/137 (23%), Positives = 53/137 (38%), Gaps = 11/137 (8%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           R   R  A Q L+ ++    +  +   +  T              Y     E+   +I G
Sbjct: 5   RHQIREIAFQTLFALNTNDQTDWKDFFQVLT-----------SGKYGDDYPEYLHQLISG 53

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
           V++ K  ID  I   L   WS  R+      IL   + E++    +P +V I+E + +A 
Sbjct: 54  VLEHKSEIDHTIEKYLASSWSLERIARTDLIILEIAIYEMVYVDDMPAKVSINEAIELAK 113

Query: 136 DFFYGDEPKFINAVLDK 152
            F      KF+N +L  
Sbjct: 114 KFSDDRSRKFVNGILSH 130


>gi|323488925|ref|ZP_08094162.1| N utilization substance protein B-like protein (NusB-like protein)
           [Planococcus donghaensis MPA1U2]
 gi|323397317|gb|EGA90126.1| N utilization substance protein B-like protein (NusB-like protein)
           [Planococcus donghaensis MPA1U2]
          Length = 129

 Score =  140 bits (354), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 33/139 (23%), Positives = 56/139 (40%), Gaps = 17/139 (12%)

Query: 15  RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74
           +R  AR  A+Q L+Q++    +  E +                  V    +  ++ +++ 
Sbjct: 2   KRHEAREKALQTLFQLEGTELTINEAMDH----------------VMAGENDNFYDLLVQ 45

Query: 75  GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134
           G       ID  +   L E WS  RL  I  +ILR  + EL      P  V+++E + + 
Sbjct: 46  GTYTNMATIDEKLVDHL-ENWSIERLPKIERTILRMAIFELEYMEDAPARVVMNEAIELC 104

Query: 135 HDFFYGDEPKFINAVLDKV 153
             F      +F+N VL K 
Sbjct: 105 KTFGDDKSSRFVNGVLSKF 123


>gi|172040644|ref|YP_001800358.1| transcription antitermination protein NusB [Corynebacterium
           urealyticum DSM 7109]
 gi|171851948|emb|CAQ04924.1| N utilization substance protein B [Corynebacterium urealyticum DSM
           7109]
          Length = 248

 Score =  140 bits (354), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 42/180 (23%), Positives = 75/180 (41%), Gaps = 21/180 (11%)

Query: 4   QDNKKDLKLSHR--RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVY 61
           +D +   +   R  R  AR  AV  L++ +       +I+ E        + ++      
Sbjct: 28  KDERSAARFKRRGARYKARRRAVDILFEAEFRDIDPVDIMEERAELAKDQENQIKPIP-- 85

Query: 62  LHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSV 121
                E+   I+ GV      ID  I+  LT  W+  R+  +  +++R    EL+    V
Sbjct: 86  -----EYTSQIVPGVASNLDAIDDAIAVHLTSDWTLDRIPAVDRAVMRVAAWELMFNADV 140

Query: 122 PVEVIISEYVCIAHDFFYGDEPKFINAVLDKV------------SRKEEIKRSGCVSAIT 169
           P  V +SE + +A ++ +   P ++NAVLD V            + + E ++SG  S  T
Sbjct: 141 PHRVALSEGIELASEYSHVKAPDYVNAVLDGVATDADAAMADRLAAQREQEQSGSESGTT 200


>gi|50914880|ref|YP_060852.1| transcription antitermination protein NusB [Streptococcus pyogenes
           MGAS10394]
 gi|50903954|gb|AAT87669.1| N utilization substance protein B [Streptococcus pyogenes
           MGAS10394]
          Length = 156

 Score =  140 bits (354), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 35/143 (24%), Positives = 69/143 (48%), Gaps = 6/143 (4%)

Query: 14  HRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVII 73
           + R   R  A QAL+ I+    +  E+++    + +  D     ++  L + + +   ++
Sbjct: 13  NSRRDLRERAFQALFNIE----TGAELLAA-SQFAYGYDKVTGEDAQVLELPI-FLLSLV 66

Query: 74  HGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCI 133
            GV + K+ +D LIS+ L + WS  RL +   ++LR G+ E+      P  V ++E + +
Sbjct: 67  TGVNNHKEELDNLISTHLKKGWSLERLTLTDKTLLRLGLFEIKYFDETPDRVALNEIIEV 126

Query: 134 AHDFFYGDEPKFINAVLDKVSRK 156
           A  +      KFIN +L +   +
Sbjct: 127 AKKYSDETSAKFINGLLSQYVSE 149


>gi|319779127|ref|YP_004130040.1| Transcription termination protein NusB [Taylorella equigenitalis
           MCE9]
 gi|317109151|gb|ADU91897.1| Transcription termination protein NusB [Taylorella equigenitalis
           MCE9]
          Length = 144

 Score =  140 bits (354), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 34/149 (22%), Positives = 61/149 (40%), Gaps = 11/149 (7%)

Query: 13  SHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVI 72
           +  R  AR   VQ LY   +   S               D+ +  +  +   DL  ++  
Sbjct: 7   TSARHTARELVVQGLYSWLLSNESQDIA---------SVDSHIREQENFDFADLNLYKTS 57

Query: 73  IHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVC 132
           ++GV+     +    +  ++   S S L  +  +I+     EL+     P  V+I+E + 
Sbjct: 58  LYGVIQNADSLREEFAPFISR--SASELSPVEHAIMLLATYELLHFPETPYRVVINEAIE 115

Query: 133 IAHDFFYGDEPKFINAVLDKVSRKEEIKR 161
           +A +F   D  KFIN  LDK++ K  +  
Sbjct: 116 LAKEFGGTDGFKFINGALDKLAEKIRVHE 144


>gi|46579608|ref|YP_010416.1| N utilization substance protein B [Desulfovibrio vulgaris str.
           Hildenborough]
 gi|120602904|ref|YP_967304.1| NusB antitermination factor [Desulfovibrio vulgaris DP4]
 gi|81566935|sp|Q72CT6|NUSB_DESVH RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|166215687|sp|A1VEL1|NUSB_DESVV RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|46449023|gb|AAS95675.1| N utilization substance protein B [Desulfovibrio vulgaris str.
           Hildenborough]
 gi|120563133|gb|ABM28877.1| NusB antitermination factor [Desulfovibrio vulgaris DP4]
 gi|311233412|gb|ADP86266.1| NusB antitermination factor [Desulfovibrio vulgaris RCH1]
          Length = 153

 Score =  140 bits (354), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 35/148 (23%), Positives = 61/148 (41%), Gaps = 6/148 (4%)

Query: 11  KLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFR 70
           K +  R  AR  A Q LY +         +    E Y    D      S        +  
Sbjct: 4   KGTPSRRAARALAFQILYGLGFS--PAASVKQLREAYASSPDVADKGRSPQPEG---FAW 58

Query: 71  VIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEY 130
            +I G+   + +ID +I    ++ W   R+  +  ++LR  V E++    VP +V I+E 
Sbjct: 59  ELIEGIWTEQANIDEVIG-LFSQNWRIDRIGRVELTLLRIAVYEMLYRIDVPPKVAINEA 117

Query: 131 VCIAHDFFYGDEPKFINAVLDKVSRKEE 158
           + ++  F   +   FIN +LD  ++  E
Sbjct: 118 LELSKQFGDANARGFINGILDAAAKALE 145


>gi|306826738|ref|ZP_07460040.1| transcription antitermination factor NusB [Streptococcus pyogenes
           ATCC 10782]
 gi|68052494|sp|Q5XA94|NUSB_STRP6 RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|304431027|gb|EFM34034.1| transcription antitermination factor NusB [Streptococcus pyogenes
           ATCC 10782]
          Length = 150

 Score =  140 bits (354), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 35/143 (24%), Positives = 69/143 (48%), Gaps = 6/143 (4%)

Query: 14  HRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVII 73
           + R   R  A QAL+ I+    +  E+++    + +  D     ++  L + + +   ++
Sbjct: 7   NSRRDLRERAFQALFNIE----TGAELLAA-SQFAYGYDKVTGEDAQVLELPI-FLLSLV 60

Query: 74  HGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCI 133
            GV + K+ +D LIS+ L + WS  RL +   ++LR G+ E+      P  V ++E + +
Sbjct: 61  TGVNNHKEELDNLISTHLKKGWSLERLTLTDKTLLRLGLFEIKYFDETPDRVALNEIIEV 120

Query: 134 AHDFFYGDEPKFINAVLDKVSRK 156
           A  +      KFIN +L +   +
Sbjct: 121 AKKYSDETSAKFINGLLSQYVSE 143


>gi|116333616|ref|YP_795143.1| transcription antitermination protein NusB [Lactobacillus brevis
           ATCC 367]
 gi|122269697|sp|Q03RR0|NUSB_LACBA RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|116098963|gb|ABJ64112.1| NusB antitermination factor [Lactobacillus brevis ATCC 367]
          Length = 142

 Score =  140 bits (354), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 29/141 (20%), Positives = 56/141 (39%), Gaps = 9/141 (6%)

Query: 12  LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71
           ++  R   R  A Q L+ ++    +  + + +           L  +   L    ++   
Sbjct: 1   MTLTRHQIRERAFQMLFALNANPEADHDALYQRV---------LTDDPNQLVPVPDYLAT 51

Query: 72  IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
           +++GV+  +  +D  I   L+  W   R+      ILR    E+     VP  V ++E +
Sbjct: 52  LVNGVLAHQSELDAQIDQYLSTGWQLKRIAKTDLVILRMAFYEIEHVDDVPNRVAVNEAL 111

Query: 132 CIAHDFFYGDEPKFINAVLDK 152
            +A +F      +FIN VL  
Sbjct: 112 ELAKNFSDDRSRRFINGVLAH 132


>gi|255318080|ref|ZP_05359325.1| transcription antitermination factor NusB [Acinetobacter
           radioresistens SK82]
 gi|262380575|ref|ZP_06073729.1| transcription antitermination factor NusB [Acinetobacter
           radioresistens SH164]
 gi|255304903|gb|EET84075.1| transcription antitermination factor NusB [Acinetobacter
           radioresistens SK82]
 gi|262298021|gb|EEY85936.1| transcription antitermination factor NusB [Acinetobacter
           radioresistens SH164]
          Length = 149

 Score =  140 bits (353), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 35/140 (25%), Positives = 64/140 (45%), Gaps = 13/140 (9%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           +  AR  AVQ +Y+  +      EI +               E+    VDL ++  ++  
Sbjct: 12  KRKARRFAVQGIYEWQMSHNPVHEIEA-----------RTRAENAMHKVDLGYYHELLTQ 60

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
           V+ + + +D L+   L  +     LD +  + LR G  EL +   +P  V++ E + +A 
Sbjct: 61  VVAQHEALDTLLVPVLDRE--LGALDGVELATLRLGAYELRDHLEIPYRVVLDEAIELAK 118

Query: 136 DFFYGDEPKFINAVLDKVSR 155
            F   D  K+IN VLD++++
Sbjct: 119 HFGGADSHKYINGVLDRLAQ 138


>gi|253995875|ref|YP_003047939.1| NusB antitermination factor [Methylotenera mobilis JLW8]
 gi|253982554|gb|ACT47412.1| NusB antitermination factor [Methylotenera mobilis JLW8]
          Length = 178

 Score =  140 bits (353), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 37/153 (24%), Positives = 67/153 (43%), Gaps = 16/153 (10%)

Query: 13  SHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVI 72
           S  R  +R   ++A+Y+  +     +++             ++  +  Y   D  +F+ +
Sbjct: 37  SQNRRKSRELVLKAVYRGMLNDSELSQVFR-----------DMRDDPDYNKADEAYFKHL 85

Query: 73  IHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVC 132
           +  V +    ID  I   +    +   L  +  +ILR    EL+   S+P  V+I+E V 
Sbjct: 86  LQAVTENLTAIDGKIVGFIDR--TLEELSPVEHAILRIAGCELMFDLSIPYRVVINEGVE 143

Query: 133 IAHDFFYGDEPKFINAVLDKVS---RKEEIKRS 162
           +A  F   D  K+IN VLDK +   R  E+K +
Sbjct: 144 LAKVFGGTDGHKYINGVLDKFAADVRAAEVKAA 176


>gi|154248795|ref|YP_001409620.1| transcription antitermination protein NusB [Fervidobacterium
           nodosum Rt17-B1]
 gi|171769316|sp|A7HJ80|NUSB_FERNB RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|154152731|gb|ABS59963.1| NusB antitermination factor [Fervidobacterium nodosum Rt17-B1]
          Length = 141

 Score =  140 bits (353), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 41/151 (27%), Positives = 69/151 (45%), Gaps = 13/151 (8%)

Query: 12  LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71
           +  +R + R   V+  +Q +       EI SE          + D            F+ 
Sbjct: 1   MVSKRRVLREMVVKLFFQREFRHNEFEEIFSETLNKIRDNTIKAD------------FKR 48

Query: 72  IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
            + GV      ID +IS+ L   WSF RL  +  ++LR G  ELI   ++P+EV I+E +
Sbjct: 49  YVEGVFHNLSTIDNIISNHLI-NWSFDRLSYLERNVLRVGTYELIYEENIPIEVTINEMI 107

Query: 132 CIAHDFFYGDEPKFINAVLDKVSRKEEIKRS 162
            IA  +   +  KF+N +LD+++++   K  
Sbjct: 108 EIAKKYGSEESGKFVNGILDRIAKEHAPKEK 138


>gi|157150386|ref|YP_001451127.1| transcription antitermination protein NusB [Streptococcus gordonii
           str. Challis substr. CH1]
 gi|157075180|gb|ABV09863.1| transcription antitermination factor NusB [Streptococcus gordonii
           str. Challis substr. CH1]
          Length = 137

 Score =  140 bits (353), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 39/142 (27%), Positives = 64/142 (45%), Gaps = 9/142 (6%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           R   R  A QAL  ++  G      I E   + +  D E + +         +   +++G
Sbjct: 5   RRDLRERAFQALMSLEYDGD-----IVEACRFAYLHDKEEEEQVELPI----FLLNLVNG 55

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
           VM  K  +D  I+  L   W+  RL ++  +ILR G+ EL+E    P  V ++E + +A 
Sbjct: 56  VMQSKSELDDKITQYLKSGWTLDRLTLVEKNILRLGLYELLEYDETPQLVAVNEAIELAK 115

Query: 136 DFFYGDEPKFINAVLDKVSRKE 157
            F      KFIN +L +   +E
Sbjct: 116 KFSDEKSSKFINGILSQFVTEE 137


>gi|18310806|ref|NP_562740.1| transcription antitermination protein NusB [Clostridium perfringens
           str. 13]
 gi|110801167|ref|YP_696507.1| transcription antitermination protein NusB [Clostridium perfringens
           ATCC 13124]
 gi|168206122|ref|ZP_02632127.1| N utilization substance protein B [Clostridium perfringens E str.
           JGS1987]
 gi|168210813|ref|ZP_02636438.1| N utilization substance protein B [Clostridium perfringens B str.
           ATCC 3626]
 gi|168214398|ref|ZP_02640023.1| N utilization substance protein B [Clostridium perfringens CPE str.
           F4969]
 gi|169343548|ref|ZP_02864547.1| N utilization substance protein B [Clostridium perfringens C str.
           JGS1495]
 gi|182625668|ref|ZP_02953437.1| N utilization substance protein B [Clostridium perfringens D str.
           JGS1721]
 gi|22095945|sp|Q8XJD6|NUSB_CLOPE RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|119390759|sp|Q0TPD3|NUSB_CLOP1 RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|18145487|dbj|BAB81530.1| probable N utilization substance protein B [Clostridium perfringens
           str. 13]
 gi|110675814|gb|ABG84801.1| N utilization substance protein B [Clostridium perfringens ATCC
           13124]
 gi|169298108|gb|EDS80198.1| N utilization substance protein B [Clostridium perfringens C str.
           JGS1495]
 gi|170662434|gb|EDT15117.1| N utilization substance protein B [Clostridium perfringens E str.
           JGS1987]
 gi|170711117|gb|EDT23299.1| N utilization substance protein B [Clostridium perfringens B str.
           ATCC 3626]
 gi|170714129|gb|EDT26311.1| N utilization substance protein B [Clostridium perfringens CPE str.
           F4969]
 gi|177909070|gb|EDT71545.1| N utilization substance protein B [Clostridium perfringens D str.
           JGS1721]
          Length = 135

 Score =  140 bits (353), Expect = 8e-32,   Method: Composition-based stats.
 Identities = 37/144 (25%), Positives = 66/144 (45%), Gaps = 10/144 (6%)

Query: 15  RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74
            R  +R   +Q  YQ++I   +  E  + +      +  +L         DL + +  + 
Sbjct: 2   NRVKSREYLLQLAYQMEITSETALETFNSFMENEDISKDDL---------DLAYIKSGLL 52

Query: 75  GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134
           G+ + K+ +D LI S L + W  +R+  +  SILR    E++    VP +V I+E + + 
Sbjct: 53  GIEENKEKLDSLIESQLVK-WKLNRISKVNLSILRISTYEILFAEDVPGKVSINEAIELC 111

Query: 135 HDFFYGDEPKFINAVLDKVSRKEE 158
             +       FIN VLDKV +  +
Sbjct: 112 KKYSDNKSVSFINGVLDKVYKNMQ 135


>gi|150020739|ref|YP_001306093.1| transcription antitermination protein NusB [Thermosipho
           melanesiensis BI429]
 gi|166215726|sp|A6LLA7|NUSB_THEM4 RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|149793260|gb|ABR30708.1| NusB antitermination factor [Thermosipho melanesiensis BI429]
          Length = 141

 Score =  140 bits (353), Expect = 8e-32,   Method: Composition-based stats.
 Identities = 39/151 (25%), Positives = 65/151 (43%), Gaps = 13/151 (8%)

Query: 12  LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71
           +   R   R A  ++L+Q D       E IS+        + +            E    
Sbjct: 1   MLKSRHKMREAIFKSLFQWDFNKEEILEEISKEHIVSLEPNLQ------------ELAVN 48

Query: 72  IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
            + G+ +    ID +IS  L + W+  RL +   +ILR G  ELI    +P+EV + E +
Sbjct: 49  YLKGIRENIDVIDEIISKYL-KNWTLERLSVTDRNILRLGTYELIYVDDIPIEVTLDEMI 107

Query: 132 CIAHDFFYGDEPKFINAVLDKVSRKEEIKRS 162
            +   +   +  KF+N VLDK+++ E  K  
Sbjct: 108 ELGKTYGTENSGKFVNGVLDKIAKAEAPKEK 138


>gi|24380206|ref|NP_722161.1| transcription antitermination protein NusB [Streptococcus mutans
           UA159]
 gi|32171640|sp|Q8DSE9|NUSB_STRMU RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|24378212|gb|AAN59467.1|AE015011_6 putative transcription termination factor [Streptococcus mutans
           UA159]
          Length = 142

 Score =  140 bits (353), Expect = 8e-32,   Method: Composition-based stats.
 Identities = 41/143 (28%), Positives = 65/143 (45%), Gaps = 9/143 (6%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           R   R  A QAL+ ++  G + T   +    Y +  + E + E         +   +I G
Sbjct: 9   RRDLRERAFQALFSLEFGGDNLT---AARFAYTYDKNEEEEAELPL------FLLTLIQG 59

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
           V D ++ ID  IS  L   W+ SRL +I  S+LR G+ E+      P  V ++E + IA 
Sbjct: 60  VSDCRREIDKNISIHLKSGWTLSRLTLIDKSLLRLGLYEIKYHKETPERVALNEIIEIAK 119

Query: 136 DFFYGDEPKFINAVLDKVSRKEE 158
            +      KFIN VL +   + +
Sbjct: 120 KYSDEKSSKFINGVLSQFVLERK 142


>gi|167628417|ref|YP_001678916.1| transcription antitermination factor nusb [Heliobacterium
           modesticaldum Ice1]
 gi|238687883|sp|B0TEI6|NUSB_HELMI RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|167591157|gb|ABZ82905.1| transcription antitermination factor nusb [Heliobacterium
           modesticaldum Ice1]
          Length = 206

 Score =  140 bits (353), Expect = 9e-32,   Method: Composition-based stats.
 Identities = 31/152 (20%), Positives = 66/152 (43%), Gaps = 12/152 (7%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           R   R  A+Q L+  D+        + +Y +  F                  + R ++ G
Sbjct: 3   RRQGRETALQTLFMADVGRMEPAYAL-QYASEEFG----------ISEAAAAFARELVEG 51

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
            +  ++ ID  I   L ++W+  R+  +  ++LR  + E++    +P+   I+E + +A 
Sbjct: 52  AVANRETIDGNIRR-LAKEWNLERMPHVDRNLLRVAIFEMLFREDIPLNAAINEAIELAK 110

Query: 136 DFFYGDEPKFINAVLDKVSRKEEIKRSGCVSA 167
            +   +  KF+N +L +++R+    R    SA
Sbjct: 111 IYANEESAKFVNGILGQLARELREARGEKTSA 142


>gi|254293744|ref|YP_003059767.1| NusB antitermination factor [Hirschia baltica ATCC 49814]
 gi|254042275|gb|ACT59070.1| NusB antitermination factor [Hirschia baltica ATCC 49814]
          Length = 163

 Score =  140 bits (353), Expect = 9e-32,   Method: Composition-based stats.
 Identities = 63/157 (40%), Positives = 83/157 (52%), Gaps = 7/157 (4%)

Query: 1   MTIQ---DNKKDLKLSH-RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELD 56
           MT +   D     KL    R  ARLAAVQALYQI+  G +   +I +Y       D E  
Sbjct: 1   MTNEPAIDKDAARKLRKLSRSGARLAAVQALYQIEQTGRAGRAVIEDYCEDGIGLDDEGR 60

Query: 57  VESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELI 116
                   D E FR  + GV++    I+L I   L + W   RLD    +ILRAGV EL+
Sbjct: 61  PIEA---ADPEIFRNTVEGVIESLDDINLAIVKRLADGWKIERLDATSRAILRAGVYELM 117

Query: 117 ECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKV 153
           +   +P ++I+ EYV IAH FF   EP+FINA+L+ V
Sbjct: 118 KRDDLPAQIILDEYVSIAHAFFDDAEPRFINALLENV 154


>gi|217077046|ref|YP_002334762.1| transcription antitermination protein NusB [Thermosipho africanus
           TCF52B]
 gi|226738907|sp|B7IH57|NUSB_THEAB RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|217036899|gb|ACJ75421.1| transcription antitermination factor NusB [Thermosipho africanus
           TCF52B]
          Length = 142

 Score =  139 bits (352), Expect = 9e-32,   Method: Composition-based stats.
 Identities = 38/151 (25%), Positives = 68/151 (45%), Gaps = 12/151 (7%)

Query: 12  LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71
           +  RR   R +  +AL+Q D       ++    + +    + E   E  Y +        
Sbjct: 1   MIKRRHKMRESVFKALFQWDFQKD--EDLTEIAKQHVSLLEDEKLREQAYSY-------- 50

Query: 72  IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
            I G+    + +D +IS  L + W+  RL +   +ILR G  EL+    VP+EV + E +
Sbjct: 51  -IEGIKKTIESLDEIISKYL-QNWTLDRLSVTDRNILRLGTYELLYVDDVPIEVTLDEMI 108

Query: 132 CIAHDFFYGDEPKFINAVLDKVSRKEEIKRS 162
            +   +   +  KF+N VLD++++ E  K  
Sbjct: 109 ELGKTYGTENSGKFVNGVLDRIAKGEAPKEK 139


>gi|290579819|ref|YP_003484211.1| putative transcription termination factor [Streptococcus mutans
           NN2025]
 gi|254996718|dbj|BAH87319.1| putative transcription termination factor [Streptococcus mutans
           NN2025]
          Length = 147

 Score =  139 bits (352), Expect = 9e-32,   Method: Composition-based stats.
 Identities = 41/143 (28%), Positives = 65/143 (45%), Gaps = 9/143 (6%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           R   R  A QAL+ ++  G + T   +    Y +  + E + E         +   +I G
Sbjct: 14  RRDLRERAFQALFSLEFGGDNLT---AARFAYTYDKNEEEEAELPL------FLLTLIQG 64

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
           V D ++ ID  IS  L   W+ SRL +I  S+LR G+ E+      P  V ++E + IA 
Sbjct: 65  VYDCRREIDKNISIHLKSGWTLSRLTLIDKSLLRLGLYEIKYHKETPERVALNEIIEIAK 124

Query: 136 DFFYGDEPKFINAVLDKVSRKEE 158
            +      KFIN VL +   + +
Sbjct: 125 KYSDEKSSKFINGVLSQFVLERK 147


>gi|324998653|ref|ZP_08119765.1| NusB antitermination factor [Pseudonocardia sp. P1]
          Length = 139

 Score =  139 bits (352), Expect = 9e-32,   Method: Composition-based stats.
 Identities = 35/141 (24%), Positives = 63/141 (44%), Gaps = 13/141 (9%)

Query: 14  HRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVII 73
             R  AR  A+  L++ +  G +  E+++               E+       E+   ++
Sbjct: 2   RARTKARKRALDILFEAEARGEAPLEVLT------------ARRETDDAPPVQEYAARLV 49

Query: 74  HGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCI 133
            GV   ++ ID L++    E W+  R+  +   +LR GV EL+    V   V I+E V +
Sbjct: 50  EGVATHRERIDQLLAEH-AEGWTVDRMPAVDRGLLRIGVYELLWVDDVDDPVAITEAVEL 108

Query: 134 AHDFFYGDEPKFINAVLDKVS 154
           A      D P+++N VL ++S
Sbjct: 109 ARTLSTDDSPRYVNGVLGQIS 129


>gi|163790200|ref|ZP_02184633.1| transcription antitermination protein NusB [Carnobacterium sp. AT7]
 gi|159874475|gb|EDP68546.1| transcription antitermination protein NusB [Carnobacterium sp. AT7]
          Length = 147

 Score =  139 bits (352), Expect = 9e-32,   Method: Composition-based stats.
 Identities = 37/151 (24%), Positives = 70/151 (46%), Gaps = 5/151 (3%)

Query: 12  LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71
           +S  R   R  A+Q+L+Q+ +    + E   E   +   ++ +L  E   + V   +  +
Sbjct: 1   MSLTRRDIREKALQSLFQLSVNEDLSKE---EAMQHALISENDLIDEVETVLV-PSYLDM 56

Query: 72  IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
           ++ GVM+++  ID  I + L E WS +RL      I+R  + E++    VP  V ++E +
Sbjct: 57  LVSGVMEKQDEIDEKIKTHL-ENWSLNRLAKTDLIIIRVAIFEMMYVSDVPDRVALNEAL 115

Query: 132 CIAHDFFYGDEPKFINAVLDKVSRKEEIKRS 162
            I   +      KF+N VL  +  +     +
Sbjct: 116 EITKKYSDEKSRKFVNGVLANIVNENSENEA 146


>gi|182683397|ref|YP_001835144.1| transcription antitermination protein NusB [Streptococcus
           pneumoniae CGSP14]
 gi|182628731|gb|ACB89679.1| transcription antitermination protein NusB [Streptococcus
           pneumoniae CGSP14]
          Length = 146

 Score =  139 bits (352), Expect = 9e-32,   Method: Composition-based stats.
 Identities = 41/158 (25%), Positives = 68/158 (43%), Gaps = 12/158 (7%)

Query: 1   MTIQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESV 60
           MT   +     L  RR + R  A QAL  ++  G             RF    + +   V
Sbjct: 1   MTRTSSMTSPLLESRRQL-RKCAFQALMSLEF-GTDVET------ACRFAYTHDREYTDV 52

Query: 61  YLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHS 120
            L     +   ++ GV  +K+ +D  I+  L   W+  RL ++  ++LR GV E+     
Sbjct: 53  QLPA---FLIDLVSGVQAKKEELDKQITQHLKAGWTIERLTLVERNLLRLGVFEITSF-D 108

Query: 121 VPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEE 158
            P  V I+E + +A DF      +FIN +L +   +E+
Sbjct: 109 TPQLVAINEAIELAKDFSDQKSARFINGLLSQFVTEEQ 146


>gi|212702193|ref|ZP_03310321.1| hypothetical protein DESPIG_00204 [Desulfovibrio piger ATCC 29098]
 gi|212674398|gb|EEB34881.1| hypothetical protein DESPIG_00204 [Desulfovibrio piger ATCC 29098]
          Length = 157

 Score =  139 bits (352), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 36/157 (22%), Positives = 63/157 (40%), Gaps = 11/157 (7%)

Query: 12  LSHRRGIARLAAVQALYQIDIIG-CSTTEIISEYETYRFCADTELDVESVYLHVDLEWFR 70
            S  R   R  A Q LY +      S  ++   +       ++E          D     
Sbjct: 5   KSASRRGERAQAFQVLYGLSFADATSLEDVRRAFLQSPDHQESEEGELPSGFSWD----- 59

Query: 71  VIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEY 130
            ++ GV  R+  +D  IS   +  W   R+  +  ++LR  + EL+    VP +V I+E 
Sbjct: 60  -LVQGVWSRRDELDKTISRF-SRNWRVDRMGRVELTLLRLAMYELLYRQDVPAKVAINEA 117

Query: 131 VCIAHDFFYGDEPKFINAVLDKVSRKEEIKRSGCVSA 167
           + +   F   +   F+N +LD  ++  E    G +SA
Sbjct: 118 LELTRQFGEDNATSFVNGILDAAAKALE---KGSLSA 151


>gi|15644510|ref|NP_229562.1| transcription antitermination protein NusB [Thermotoga maritima
           MSB8]
 gi|7387977|sp|Q9X286|NUSB_THEMA RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|52695948|pdb|1TZT|A Chain A, T. Maritima Nusb, P21
 gi|52695949|pdb|1TZT|B Chain B, T. Maritima Nusb, P21
 gi|52695950|pdb|1TZU|A Chain A, T. Maritima Nusb, P212121
 gi|52695951|pdb|1TZV|A Chain A, T. Maritima Nusb, P3121, Form 1
 gi|52695952|pdb|1TZW|A Chain A, T. Maritima Nusb, P3121, Form 2
 gi|52695953|pdb|1TZX|A Chain A, T. Maritima Nusb, P3221
 gi|52695954|pdb|1TZX|B Chain B, T. Maritima Nusb, P3221
 gi|4982344|gb|AAD36829.1|AE001815_3 N utilization substance protein B [Thermotoga maritima MSB8]
 gi|22859189|emb|CAD45556.1| N utilisation substance protein B [Expression vector
           pNCO113-TM-nusB]
          Length = 142

 Score =  139 bits (352), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 45/154 (29%), Positives = 72/154 (46%), Gaps = 16/154 (10%)

Query: 10  LKLSHRRGIARLAAVQALYQIDII-GCSTTEIISEYETYRFCADTELDVESVYLHVDLEW 68
           +K   RR   RLA  +AL+Q +        +I+ E              +  Y     E 
Sbjct: 1   MKTPRRRM--RLAVFKALFQHEFRRDEDLEQILEEIL------------DETYDKKAKED 46

Query: 69  FRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIIS 128
            R  I G+ +    ID LIS  L EKWS +RL ++  ++LR    EL+    +P+EV I 
Sbjct: 47  ARRYIRGIKENLSMIDDLISRYL-EKWSLNRLSVVDRNVLRLATYELLFEKDIPIEVTID 105

Query: 129 EYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRS 162
           E + IA  +   +  KF+N +LD+++++   K  
Sbjct: 106 EAIEIAKRYGTENSGKFVNGILDRIAKEHAPKEK 139


>gi|322382777|ref|ZP_08056621.1| transcription antitermination-like protein NusB [Paenibacillus
           larvae subsp. larvae B-3650]
 gi|321153246|gb|EFX45692.1| transcription antitermination-like protein NusB [Paenibacillus
           larvae subsp. larvae B-3650]
          Length = 133

 Score =  139 bits (352), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 25/129 (19%), Positives = 56/129 (43%), Gaps = 2/129 (1%)

Query: 30  IDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISS 89
           + +   +  E +          + E  V+         +   ++ G +  ++ ID ++S 
Sbjct: 1   MTMNEVTAKEAVDSVIDEALH-ENEGAVDLNGDTSAKPYIHELVEGTLTNRERIDQILSE 59

Query: 90  CLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAV 149
            L + W   RL  +   +LR    E++     P +V+++E + +A  F   +  KF+N V
Sbjct: 60  YL-KGWQMDRLSKVDREVLRMAAYEMLYRQDTPPKVVVNEAIELAKHFGTDESGKFVNGV 118

Query: 150 LDKVSRKEE 158
           L K+ ++ +
Sbjct: 119 LGKLIKEMD 127


>gi|78044961|ref|YP_360813.1| transcription antitermination factor NusB [Carboxydothermus
           hydrogenoformans Z-2901]
 gi|119390754|sp|Q3AAM1|NUSB_CARHZ RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|77997076|gb|ABB15975.1| transcription antitermination factor NusB [Carboxydothermus
           hydrogenoformans Z-2901]
          Length = 144

 Score =  139 bits (352), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 35/140 (25%), Positives = 69/140 (49%), Gaps = 7/140 (5%)

Query: 15  RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74
            R  AR  A +AL+ +D     T + +      +  A+ ++  E +     +++ R ++ 
Sbjct: 2   NRHTARELAFKALFGLDFAPEKTLDTLESLWAEK-IAEGKIPPEKL-----VDFSRELVR 55

Query: 75  GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134
           GV+++K+ +D +I       W F RL  +  ++LR  + E++    + + V I E V +A
Sbjct: 56  GVIEKKERLDEIIRRR-AIGWDFKRLAKVDKTLLRLALYEMLYRPDIDIPVSIDEAVELA 114

Query: 135 HDFFYGDEPKFINAVLDKVS 154
             +   + PKFIN +L  V+
Sbjct: 115 KVYGEEESPKFINGILGYVA 134


>gi|170288851|ref|YP_001739089.1| NusB antitermination factor [Thermotoga sp. RQ2]
 gi|281412471|ref|YP_003346550.1| NusB antitermination factor [Thermotoga naphthophila RKU-10]
 gi|238688836|sp|B1LAQ8|NUSB_THESQ RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|170176354|gb|ACB09406.1| NusB antitermination factor [Thermotoga sp. RQ2]
 gi|281373574|gb|ADA67136.1| NusB antitermination factor [Thermotoga naphthophila RKU-10]
          Length = 142

 Score =  139 bits (352), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 45/154 (29%), Positives = 71/154 (46%), Gaps = 16/154 (10%)

Query: 10  LKLSHRRGIARLAAVQALYQIDII-GCSTTEIISEYETYRFCADTELDVESVYLHVDLEW 68
           +K   RR   RLA  +AL+Q +        +I+ E              +  Y     E 
Sbjct: 1   MKTPRRRM--RLAVFKALFQHEFRRDEDLEQILEEIL------------DETYDKKAKED 46

Query: 69  FRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIIS 128
            R  I G+ +    ID LIS  L EKWS +RL  +  ++LR    EL+    +P+EV I 
Sbjct: 47  ARRYIRGIKENLPMIDNLISRYL-EKWSLNRLSAVDRNVLRLATYELLFEKDIPIEVTID 105

Query: 129 EYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRS 162
           E + IA  +   +  KF+N +LD+++++   K  
Sbjct: 106 EAIEIAKRYGTENSGKFVNGILDRIAKEHAPKEK 139


>gi|239917765|ref|YP_002957323.1| transcription antitermination factor NusB [Micrococcus luteus NCTC
           2665]
 gi|239838972|gb|ACS30769.1| transcription antitermination factor NusB [Micrococcus luteus NCTC
           2665]
          Length = 150

 Score =  139 bits (351), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 38/143 (26%), Positives = 70/143 (48%), Gaps = 14/143 (9%)

Query: 11  KLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFR 70
           + +  R  +R  AV+ L++ +  G + +E I    T R   D +++           + +
Sbjct: 13  RGTTARSRSRQRAVEILFEAEQRGSTVSEGIR---TRRESTDLQVN----------AYTQ 59

Query: 71  VIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEY 130
            ++ GV+  ++ +D  +SS  +  WS  R+  +  +ILR G  EL+    VP  V ISE 
Sbjct: 60  RLVEGVIADQERLDEALSSY-SRGWSLDRMPAVDRAILRVGAWELLFQDDVPDAVAISEA 118

Query: 131 VCIAHDFFYGDEPKFINAVLDKV 153
           V +A      D P+F+N +L ++
Sbjct: 119 VALAAQLSTDDSPEFVNGLLGRL 141


>gi|117923480|ref|YP_864097.1| NusB antitermination factor [Magnetococcus sp. MC-1]
 gi|117607236|gb|ABK42691.1| NusB antitermination factor [Magnetococcus sp. MC-1]
          Length = 165

 Score =  139 bits (351), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 40/166 (24%), Positives = 72/166 (43%), Gaps = 19/166 (11%)

Query: 1   MTIQDNK--KDLKLSHR--RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELD 56
           M  + +K  K      R  R  +R  A+Q LY  +I        +               
Sbjct: 1   MAHKSDKSGKSRNTMRRGGRSKSREIALQVLYGCEIAHDPVGPALRNMLE---------- 50

Query: 57  VESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELI 116
            +     +D ++F  +  GV   ++ +D  I       WS  R  ++  +ILR G+ EL+
Sbjct: 51  -DPHSEGMDQDYFSQLTLGVEAEREVLDSWIGRA-GAAWSMDRFSVVDHNILRLGIYELL 108

Query: 117 ECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVS---RKEEI 159
           +   VP  VI++E + ++  F   +  +F+N V+DKV+   R+E+ 
Sbjct: 109 KQPEVPHRVILNEAIELSKRFGGEESSRFVNGVMDKVANLVREEDA 154


>gi|169824540|ref|YP_001692151.1| transcription terminator [Finegoldia magna ATCC 29328]
 gi|297588522|ref|ZP_06947165.1| transcription antitermination factor NusB [Finegoldia magna ATCC
           53516]
 gi|303233660|ref|ZP_07320314.1| transcription antitermination factor NusB [Finegoldia magna
           BVS033A4]
 gi|238687751|sp|B0S1M1|NUSB_FINM2 RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|167831345|dbj|BAG08261.1| transcription terminator [Finegoldia magna ATCC 29328]
 gi|297573895|gb|EFH92616.1| transcription antitermination factor NusB [Finegoldia magna ATCC
           53516]
 gi|302495094|gb|EFL54846.1| transcription antitermination factor NusB [Finegoldia magna
           BVS033A4]
          Length = 137

 Score =  139 bits (351), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 37/143 (25%), Positives = 73/143 (51%), Gaps = 12/143 (8%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           R  +R +A+Q +Y++++ G    + I E+  Y+                D+E+F+ I+  
Sbjct: 3   RRQSRKSAMQLIYEMNMNGDYDKQRIEEFCKYQNIN-----------KNDIEFFKEIVLN 51

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
            ++    I  +I +  T++W+  R++ +  SIL+ GV E++   S P  V I+E V +A 
Sbjct: 52  FIEHIDDIVNIIENN-TKQWNLDRINKLDLSILQVGVCEILYVESTPDSVAINEAVELAK 110

Query: 136 DFFYGDEPKFINAVLDKVSRKEE 158
           ++       FIN +L  V +++E
Sbjct: 111 EYSTEKSYSFINGILGSVLKRKE 133


>gi|168215452|ref|ZP_02641077.1| N utilization substance protein B [Clostridium perfringens NCTC
           8239]
 gi|182382114|gb|EDT79593.1| N utilization substance protein B [Clostridium perfringens NCTC
           8239]
          Length = 135

 Score =  139 bits (351), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 37/144 (25%), Positives = 66/144 (45%), Gaps = 10/144 (6%)

Query: 15  RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74
            R  +R   +Q  YQ++I   +  E  + +      +  +L         DL + +  + 
Sbjct: 2   NRVKSREYLLQLAYQMEITSETALETFNSFMENEDISKDDL---------DLAYIKSGLL 52

Query: 75  GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134
           G+ + K+ +D LI S L + W  +R+  +  SILR    E++    VP +V I+E + + 
Sbjct: 53  GIEENKEKLDSLIESQLVK-WKLNRISKVNLSILRISTYEILFAEDVPGKVSINEAIELC 111

Query: 135 HDFFYGDEPKFINAVLDKVSRKEE 158
             +       FIN VLDKV +  +
Sbjct: 112 KKYSDNKSVSFINGVLDKVYKNMK 135


>gi|238063911|ref|ZP_04608620.1| transcription antitermination factor nusB [Micromonospora sp. ATCC
           39149]
 gi|237885722|gb|EEP74550.1| transcription antitermination factor nusB [Micromonospora sp. ATCC
           39149]
          Length = 136

 Score =  139 bits (351), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 36/139 (25%), Positives = 60/139 (43%), Gaps = 11/139 (7%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           R  AR  A+  L++ D+      E+++ Y         E           L +   ++ G
Sbjct: 4   RRKARKRALDVLFEADLRDRPPVEVLAGYVERIEKPHPEH----------LGYAVGLVEG 53

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
           V      ID LI+S   E W+  R+  +  ++ R  V EL+    +   V ISE V +A 
Sbjct: 54  VAAHLGRIDELIASY-AEGWTLDRMPAVDRNLARIAVYELLYVDELDDAVAISEAVELAR 112

Query: 136 DFFYGDEPKFINAVLDKVS 154
                D P+F+N VL +++
Sbjct: 113 QMSTDDSPRFLNGVLGRIA 131


>gi|148555686|ref|YP_001263268.1| NusB antitermination factor [Sphingomonas wittichii RW1]
 gi|148500876|gb|ABQ69130.1| NusB antitermination factor [Sphingomonas wittichii RW1]
          Length = 151

 Score =  139 bits (351), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 42/132 (31%), Positives = 66/132 (50%), Gaps = 3/132 (2%)

Query: 28  YQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLI 87
           YQ ++ G     ++ E+  +R  A  E   +  Y   ++ +F  ++ GV  R+  ID  I
Sbjct: 23  YQQEMEGTPLAALLDEFHQHRLGATIE---DVEYAAAEVAFFDDLVKGVDARRAEIDAAI 79

Query: 88  SSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFIN 147
            + L   W+  RLD  +  ILR G  ELI    VP   +ISEYV +A  F+   E  F+N
Sbjct: 80  GARLASGWTLERLDRPMRQILRVGAYELIARPDVPTATVISEYVDVADAFYDKKEKGFVN 139

Query: 148 AVLDKVSRKEEI 159
            VLD +++   +
Sbjct: 140 GVLDGIAKAVRV 151


>gi|300909746|ref|ZP_07127207.1| transcription antitermination factor NusB [Lactobacillus reuteri
           SD2112]
 gi|300893611|gb|EFK86970.1| transcription antitermination factor NusB [Lactobacillus reuteri
           SD2112]
          Length = 141

 Score =  139 bits (351), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 35/151 (23%), Positives = 61/151 (40%), Gaps = 12/151 (7%)

Query: 11  KLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFR 70
           K+S  R + R  A Q L+ +        +I + YE      + ++            +  
Sbjct: 3   KMSLNRHMIREEAFQVLFALQ--SDPEADIQTVYEAIPHHDEKQIP----------PYLL 50

Query: 71  VIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEY 130
            +++GV + +  +D  I+  L   W+ +RL      ILR  + E+    +VP  V I+E 
Sbjct: 51  TLVNGVREHQDQLDEQINDLLASGWTINRLAKPDLVILRLALFEIQYAENVPTVVAINEA 110

Query: 131 VCIAHDFFYGDEPKFINAVLDKVSRKEEIKR 161
           + +   F      KFIN  L K  R+     
Sbjct: 111 LELTKTFSSDKSRKFINGALGKFERQVNTNN 141


>gi|332686256|ref|YP_004456030.1| transcription termination protein NusB [Melissococcus plutonius
           ATCC 35311]
 gi|332370265|dbj|BAK21221.1| transcription termination protein NusB [Melissococcus plutonius
           ATCC 35311]
          Length = 158

 Score =  139 bits (351), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 37/143 (25%), Positives = 62/143 (43%), Gaps = 3/143 (2%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           R   R  A+QAL+ +D     T     +   Y    D    +     ++   +   ++ G
Sbjct: 8   RREIREKALQALFPLDFN---TELTKQDAIDYALMLDNYEVISEDQENLIPTYLDFLVDG 64

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
           V   K  +D +I   L + W+F RL  I   ILR  V E++    VP  V ++E + +A 
Sbjct: 65  VCSHKNELDQVIKRLLGKNWTFERLSKIDTVILRMAVFEMMYSSDVPAPVALNEALELAK 124

Query: 136 DFFYGDEPKFINAVLDKVSRKEE 158
            +   +  KF N +L  V ++ E
Sbjct: 125 KYSDDNARKFTNGILANVLKEIE 147


>gi|226941305|ref|YP_002796379.1| transcription antitermination protein NusB [Laribacter
           hongkongensis HLHK9]
 gi|254772644|sp|C1DB31|NUSB_LARHH RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|226716232|gb|ACO75370.1| NusB [Laribacter hongkongensis HLHK9]
          Length = 165

 Score =  139 bits (351), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 37/152 (24%), Positives = 65/152 (42%), Gaps = 15/152 (9%)

Query: 10  LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF 69
           +K   RR  AR  AVQ +YQ  +   +   I           +  L     +   D   F
Sbjct: 1   MKTPRRR--AREFAVQGIYQWQLNALTPATI-----------EKNLRDNEQFAKADEALF 47

Query: 70  RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISE 129
           R +++GV++    I+  I+S      +   +  +  ++L     EL +    P+ VII+E
Sbjct: 48  RTLLYGVLNDPVRIESAIASHFER--APEDVSPVERAVLLMAAFELTQQAETPLAVIINE 105

Query: 130 YVCIAHDFFYGDEPKFINAVLDKVSRKEEIKR 161
            + IA  F   +  +F+N VLDK + +   + 
Sbjct: 106 AIEIAKTFGGAEGHRFVNGVLDKYAAEVRPEE 137


>gi|68536104|ref|YP_250809.1| transcription antitermination protein NusB [Corynebacterium
           jeikeium K411]
 gi|119390762|sp|Q4JVG6|NUSB_CORJK RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|68263703|emb|CAI37191.1| N utilization substance protein B [Corynebacterium jeikeium K411]
          Length = 202

 Score =  139 bits (351), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 36/156 (23%), Positives = 69/156 (44%), Gaps = 7/156 (4%)

Query: 11  KLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFR 70
           K    R  AR  AV  L++ +       EI+ E  +    +  ++           E+ +
Sbjct: 18  KRHGSRYKARRRAVDILFEAEFRDIDPVEIVEERISLAKDSANQVKPVP-------EYTQ 70

Query: 71  VIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEY 130
            I+ GV      +D  I+  L+  W   RL  +  ++LR    EL     VP +V + E 
Sbjct: 71  QIVPGVATNLDALDEAIALHLSSDWQLDRLPAVDRAVLRVAAWELKFNDDVPPQVAVVEG 130

Query: 131 VCIAHDFFYGDEPKFINAVLDKVSRKEEIKRSGCVS 166
           V +A ++ +   P +I+AVLD +++  +++    ++
Sbjct: 131 VELASEYSHDKAPSYIHAVLDGINKDLQLQADLKIA 166


>gi|300870191|ref|YP_003785062.1| transcription antitermination protein NusB [Brachyspira pilosicoli
           95/1000]
 gi|300687890|gb|ADK30561.1| transcription antitermination protein, NusB [Brachyspira pilosicoli
           95/1000]
          Length = 174

 Score =  139 bits (351), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 42/149 (28%), Positives = 70/149 (46%), Gaps = 12/149 (8%)

Query: 9   DLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEW 68
           DL     R  AR+ AV ALY  +I      + ++  E + F  D +          +  +
Sbjct: 36  DLSKYGTRRQARIYAVMALYSYEIN----EKKVNINELFNFEYDDK-------KAANNSF 84

Query: 69  FRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIIS 128
            + ++ G ++  Q ID +I    ++ W+ SR+  +  SI+R  +  LI    +P  VII 
Sbjct: 85  TKELVEGTINNLQKIDSIIEKY-SKNWNISRIQYVDKSIIRMSIYSLIYLKDIPKSVIID 143

Query: 129 EYVCIAHDFFYGDEPKFINAVLDKVSRKE 157
           E V IA  F   D  KF+N +LD +  ++
Sbjct: 144 EAVEIAKIFGDKDSYKFVNGILDAIQEED 172


>gi|238021694|ref|ZP_04602120.1| hypothetical protein GCWU000324_01597 [Kingella oralis ATCC 51147]
 gi|237866308|gb|EEP67350.1| hypothetical protein GCWU000324_01597 [Kingella oralis ATCC 51147]
          Length = 145

 Score =  139 bits (351), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 45/155 (29%), Positives = 67/155 (43%), Gaps = 17/155 (10%)

Query: 10  LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF 69
           +++S RR  AR  AVQALYQ+ +      E+              +   + Y H D E F
Sbjct: 1   MRVSPRRR-AREFAVQALYQVALNKIPAPEVA-----------QHIRESNDYRHADGELF 48

Query: 70  RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISE 129
             I  G  + ++    +I   L    +   ++ I  S+L   V EL      P  VII+E
Sbjct: 49  TAIFFGAHNNQREYMQIIRPLLDRDENL--INPIERSVLLVAVHELKAMPETPYPVIINE 106

Query: 130 YVCIAHDFFYGDEPKFINAVLDKVS---RKEEIKR 161
            + +   F   D  KFIN +LDK+    R  + KR
Sbjct: 107 AIEVTKTFGGTDSHKFINGILDKLVAQLRPNDPKR 141


>gi|162455551|ref|YP_001617918.1| N utilization substance protein B [Sorangium cellulosum 'So ce 56']
 gi|189035908|sp|A9ET18|NUSB_SORC5 RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|161166133|emb|CAN97438.1| N utilization substance protein B [Sorangium cellulosum 'So ce 56']
          Length = 140

 Score =  139 bits (351), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 34/141 (24%), Positives = 62/141 (43%), Gaps = 12/141 (8%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           R   R AA+Q L+ ++  G S   +++ +       +T  D E         +   ++ G
Sbjct: 4   RSTGREAALQMLFAVEAGGSSAPRVVATF-----WRETPGDPEG------RAYADEVVVG 52

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
           V +    +D  I    +  W   R+  +  ++LR G  EL+    VP  VI+ E V +A 
Sbjct: 53  VAEDLAAVDEAIRKA-STNWRLERMARVDRNVLRLGAWELMNRPEVPRAVILDEAVELAK 111

Query: 136 DFFYGDEPKFINAVLDKVSRK 156
            +   +   F+N VLD+++  
Sbjct: 112 RYGSEESGAFVNGVLDRIAEN 132


>gi|228992930|ref|ZP_04152854.1| N utilization substance protein B [Bacillus pseudomycoides DSM
           12442]
 gi|228998974|ref|ZP_04158556.1| N utilization substance protein B [Bacillus mycoides Rock3-17]
 gi|229006513|ref|ZP_04164157.1| N utilization substance protein B [Bacillus mycoides Rock1-4]
 gi|228754739|gb|EEM04140.1| N utilization substance protein B [Bacillus mycoides Rock1-4]
 gi|228760591|gb|EEM09555.1| N utilization substance protein B [Bacillus mycoides Rock3-17]
 gi|228766787|gb|EEM15426.1| N utilization substance protein B [Bacillus pseudomycoides DSM
           12442]
          Length = 120

 Score =  139 bits (351), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 37/130 (28%), Positives = 58/130 (44%), Gaps = 14/130 (10%)

Query: 24  VQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHI 83
           +QALYQ+DI G    ++  E          E             +   ++ G ++ K+ I
Sbjct: 1   MQALYQMDITGELEPKVAVENTLEEGEETNE-------------FLESLVVGCVEHKEAI 47

Query: 84  DLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEP 143
           D  I   L +KW   R+ ++  SILR  V E+     +P  V I+E + IA  F   +  
Sbjct: 48  DEAIRQNL-KKWKLERISIVDRSILRLAVYEMKYMEEIPHNVTINEAIEIAKTFGDEESR 106

Query: 144 KFINAVLDKV 153
           +FIN VL  +
Sbjct: 107 RFINGVLSNI 116


>gi|302866812|ref|YP_003835449.1| transcription antitermination factor NusB [Micromonospora
           aurantiaca ATCC 27029]
 gi|315503227|ref|YP_004082114.1| nusb antitermination factor [Micromonospora sp. L5]
 gi|302569671|gb|ADL45873.1| transcription antitermination factor NusB [Micromonospora
           aurantiaca ATCC 27029]
 gi|315409846|gb|ADU07963.1| NusB antitermination factor [Micromonospora sp. L5]
          Length = 144

 Score =  139 bits (350), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 33/139 (23%), Positives = 60/139 (43%), Gaps = 11/139 (7%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           R  AR  A+  L++ D+      E+++ Y         +           L +   ++ G
Sbjct: 12  RRKARKRALDVLFEADLRDRPPVEVLAGYLERIEQPRPDH----------LGYAVGLVEG 61

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
           V      ID  I+S   E W+  R+ ++  ++ R  V EL+    +   V ISE V +A 
Sbjct: 62  VAAHLDRIDETIASY-AEGWTLERMPVVDRNLARIAVYELLYVDEIDDAVAISEAVELAR 120

Query: 136 DFFYGDEPKFINAVLDKVS 154
                D P+F+N +L +++
Sbjct: 121 QMSTDDSPRFLNGILGRIA 139


>gi|15675648|ref|NP_269822.1| transcription antitermination protein NusB [Streptococcus pyogenes
           M1 GAS]
 gi|22095965|sp|Q99Y88|NUSB_STRP1 RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|13622860|gb|AAK34543.1| putative transcriptional terminator [Streptococcus pyogenes M1 GAS]
          Length = 150

 Score =  139 bits (350), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 34/139 (24%), Positives = 67/139 (48%), Gaps = 6/139 (4%)

Query: 14  HRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVII 73
           + R   R  A QAL+ I++      E+++    + +  D     ++  L + + +   ++
Sbjct: 7   NSRRDLRERAFQALFNIEMG----AELLAA-SQFAYGYDKVTGEDAQVLELPI-FLLSLV 60

Query: 74  HGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCI 133
            GV + K+ +D LIS+ L + WS  RL +   ++LR G+ E+      P  V ++E + +
Sbjct: 61  TGVNNHKEELDNLISTHLKKGWSLERLTLTDKTLLRLGLFEIKYFDKTPDRVALNEIIEV 120

Query: 134 AHDFFYGDEPKFINAVLDK 152
              +      KFIN +L +
Sbjct: 121 VKKYSDETSAKFINGLLSQ 139


>gi|317154514|ref|YP_004122562.1| transcription antitermination factor NusB [Desulfovibrio
           aespoeensis Aspo-2]
 gi|316944765|gb|ADU63816.1| transcription antitermination factor NusB [Desulfovibrio
           aespoeensis Aspo-2]
          Length = 151

 Score =  139 bits (350), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 40/154 (25%), Positives = 68/154 (44%), Gaps = 11/154 (7%)

Query: 3   IQDNKKDLKLSHRRGIARLAAVQALYQIDIIG-CSTTEIISEYETYRFCADTELDVESVY 61
           +  NKK  +   RR + R  A Q LY        +  +I + +E      + E +     
Sbjct: 1   MSGNKKGNRPGIRR-VGRTLAFQVLYGTHFDDPKNPVDIGTAFERNPMVEEQESETA--- 56

Query: 62  LHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSV 121
                E+ R ++ GV      ID  I    ++ W F R+ +I  SILR  + E++    +
Sbjct: 57  ----REFARALVLGVDKNLARIDAAIGEH-SQHWKFDRIAVIELSILRLSLYEMLFT-DI 110

Query: 122 PVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSR 155
           PV+  I+E + ++  F       F+N +LD V+R
Sbjct: 111 PVKAAINEAIELSKLFGDEKSRGFVNGILDGVAR 144


>gi|152979861|ref|YP_001354028.1| N utilization substance protein B [Janthinobacterium sp. Marseille]
 gi|151279938|gb|ABR88348.1| N utilization substance protein B [Janthinobacterium sp. Marseille]
          Length = 156

 Score =  139 bits (350), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 40/166 (24%), Positives = 68/166 (40%), Gaps = 17/166 (10%)

Query: 1   MTIQ-DNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVES 59
           MT + D+    K    R  AR  A+Q LYQ  +       I           +T +    
Sbjct: 1   MTQKTDHANPSKNRTPRHRAREFALQGLYQWLLNNEDVRVI-----------ETHIRQAH 49

Query: 60  VYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECH 119
            +   D E F  +++G + +   +   ++  +  +   S L  +  + L  G  EL    
Sbjct: 50  GFDKADAEHFDALLYGTVKQVGELRAGLAPLIDRE--ISALSPVEHAALLIGAFELKNHI 107

Query: 120 SVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKV---SRKEEIKRS 162
            +P +V+I+E V +   F   D  K++N VLDK    +R+ EI   
Sbjct: 108 EIPYKVVINEAVELTKSFGGIDGHKYVNGVLDKFAVSAREVEINAG 153


>gi|322386860|ref|ZP_08060484.1| N utilization substance protein B [Streptococcus cristatus ATCC
           51100]
 gi|321269142|gb|EFX52078.1| N utilization substance protein B [Streptococcus cristatus ATCC
           51100]
          Length = 145

 Score =  139 bits (350), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 38/144 (26%), Positives = 66/144 (45%), Gaps = 9/144 (6%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLE-WFRVIIH 74
           R   R  A QAL  ++  G +        E  RF    + D E     V++  +   ++ 
Sbjct: 9   RRELRQRAFQALMSLEYEGDAI-------EACRFAYTYDKDEEETDAEVNIPAFLLNLVT 61

Query: 75  GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134
           GV+  K+ +D  I+  L   W+  RL ++  +ILR G+ E+ E    P  V ++E + ++
Sbjct: 62  GVLQSKEELDKKIAQHLKAGWTVERLTLVEKNILRLGIFEMTEF-DTPERVAVNEAIELS 120

Query: 135 HDFFYGDEPKFINAVLDKVSRKEE 158
             F      KFIN +L +   +E+
Sbjct: 121 KQFSDEKSSKFINGILSQFITEEK 144


>gi|167037510|ref|YP_001665088.1| transcription antitermination protein NusB [Thermoanaerobacter
           pseudethanolicus ATCC 33223]
 gi|167040172|ref|YP_001663157.1| transcription antitermination protein NusB [Thermoanaerobacter sp.
           X514]
 gi|256752868|ref|ZP_05493706.1| NusB antitermination factor [Thermoanaerobacter ethanolicus CCSD1]
 gi|300914255|ref|ZP_07131571.1| NusB antitermination factor [Thermoanaerobacter sp. X561]
 gi|307724509|ref|YP_003904260.1| NusB antitermination factor [Thermoanaerobacter sp. X513]
 gi|320115924|ref|YP_004186083.1| transcription antitermination factor NusB [Thermoanaerobacter
           brockii subsp. finnii Ako-1]
 gi|238687554|sp|B0K0U6|NUSB_THEPX RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|238687696|sp|B0K9D9|NUSB_THEP3 RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|166854412|gb|ABY92821.1| NusB antitermination factor [Thermoanaerobacter sp. X514]
 gi|166856344|gb|ABY94752.1| NusB antitermination factor [Thermoanaerobacter pseudethanolicus
           ATCC 33223]
 gi|256748245|gb|EEU61311.1| NusB antitermination factor [Thermoanaerobacter ethanolicus CCSD1]
 gi|300889190|gb|EFK84336.1| NusB antitermination factor [Thermoanaerobacter sp. X561]
 gi|307581570|gb|ADN54969.1| NusB antitermination factor [Thermoanaerobacter sp. X513]
 gi|319929015|gb|ADV79700.1| transcription antitermination factor NusB [Thermoanaerobacter
           brockii subsp. finnii Ako-1]
          Length = 140

 Score =  139 bits (350), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 36/148 (24%), Positives = 66/148 (44%), Gaps = 14/148 (9%)

Query: 15  RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74
            R  AR   V+ LYQ D+     ++I+  +   +   + +            E+    + 
Sbjct: 2   NRTEAREWVVKMLYQYDVSRLPISKILENFYKEKDPGEQK------------EYIENTVI 49

Query: 75  GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134
           G ++  + ID  I    ++ W+ +R+  I  +ILR  + E+    ++PV + I+E V IA
Sbjct: 50  GAIEHLEEIDKEIERY-SQNWALNRMPKIDLAILRCSIYEMQYG-NIPVNISINEAVEIA 107

Query: 135 HDFFYGDEPKFINAVLDKVSRKEEIKRS 162
             +   D P FIN +L    R E ++  
Sbjct: 108 KKYSTEDSPAFINGLLGAFVRDEGLEEG 135


>gi|268315608|ref|YP_003289327.1| NusB antitermination factor [Rhodothermus marinus DSM 4252]
 gi|262333142|gb|ACY46939.1| NusB antitermination factor [Rhodothermus marinus DSM 4252]
          Length = 165

 Score =  139 bits (350), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 36/155 (23%), Positives = 65/155 (41%), Gaps = 15/155 (9%)

Query: 14  HRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVII 73
           H R   R   +QALY  ++   +   +I          D E           L +   + 
Sbjct: 2   HSRREVRERVLQALYAYEVGHDTAEHVIDTVLRPALKDDREA----------LRFATQLF 51

Query: 74  HGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCI 133
              ++  +  D LI+    + W  +R+ +I   +LR  + EL+    +P +V I+E + +
Sbjct: 52  LRTINYSEEADRLIADH-VKNWDLTRIALIDRLLLRMAICELLAFEDIPPKVSINEAIEL 110

Query: 134 AHDFFYGDEPKFINAVLDKVS----RKEEIKRSGC 164
           A  +      +F+N VLD V     R+  +K+SG 
Sbjct: 111 AKKYSTEKSGQFVNGVLDAVVLDLQRQGRLKKSGR 145


>gi|260578799|ref|ZP_05846706.1| N utilization substance protein B family protein (protein NusB)
           [Corynebacterium jeikeium ATCC 43734]
 gi|258603097|gb|EEW16367.1| N utilization substance protein B family protein (protein NusB)
           [Corynebacterium jeikeium ATCC 43734]
          Length = 205

 Score =  139 bits (350), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 36/156 (23%), Positives = 69/156 (44%), Gaps = 7/156 (4%)

Query: 11  KLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFR 70
           K    R  AR  AV  L++ +       EI+ E  +    +  ++           E+ +
Sbjct: 18  KRHGSRYKARRRAVDILFEAEFRDIDPVEIVEERISLAKDSANQVKPVP-------EYTQ 70

Query: 71  VIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEY 130
            I+ GV      +D  I+  L+  W   RL  +  ++LR    EL     VP +V + E 
Sbjct: 71  QIVPGVATNLDALDEAIALHLSSDWQLDRLPAVDRAVLRVAAWELKFNDDVPPQVAVVEG 130

Query: 131 VCIAHDFFYGDEPKFINAVLDKVSRKEEIKRSGCVS 166
           V +A ++ +   P +I+AVLD +++  +++    ++
Sbjct: 131 VELASEYSHDKAPSYIHAVLDGINKDLQLQADLKIA 166


>gi|27468123|ref|NP_764760.1| transcription antitermination protein NusB [Staphylococcus
           epidermidis ATCC 12228]
 gi|57867014|ref|YP_188662.1| transcription antitermination protein NusB [Staphylococcus
           epidermidis RP62A]
 gi|251810937|ref|ZP_04825410.1| transcription antitermination protein NusB [Staphylococcus
           epidermidis BCM-HMP0060]
 gi|282876054|ref|ZP_06284921.1| transcription antitermination factor NusB [Staphylococcus
           epidermidis SK135]
 gi|293366519|ref|ZP_06613196.1| N utilization substance protein B [Staphylococcus epidermidis
           M23864:W2(grey)]
 gi|32129816|sp|Q8CP37|NUSB_STAES RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|71153023|sp|Q5HP28|NUSB_STAEQ RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|27315669|gb|AAO04804.1|AE016748_38 transcription termination factor [Staphylococcus epidermidis ATCC
           12228]
 gi|57637672|gb|AAW54460.1| N utilization substance protein B [Staphylococcus epidermidis
           RP62A]
 gi|251805617|gb|EES58274.1| transcription antitermination protein NusB [Staphylococcus
           epidermidis BCM-HMP0060]
 gi|281295079|gb|EFA87606.1| transcription antitermination factor NusB [Staphylococcus
           epidermidis SK135]
 gi|291319288|gb|EFE59657.1| N utilization substance protein B [Staphylococcus epidermidis
           M23864:W2(grey)]
 gi|329725378|gb|EGG61861.1| transcription antitermination factor NusB [Staphylococcus
           epidermidis VCU144]
 gi|329735255|gb|EGG71547.1| transcription antitermination factor NusB [Staphylococcus
           epidermidis VCU045]
 gi|329737366|gb|EGG73620.1| transcription antitermination factor NusB [Staphylococcus
           epidermidis VCU028]
          Length = 129

 Score =  139 bits (350), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 38/138 (27%), Positives = 61/138 (44%), Gaps = 13/138 (9%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           R  AR+ A Q L+Q++I        ++  E   F  D   D+       D ++   ++ G
Sbjct: 3   RKDARVQAFQTLFQLEIK----ETDLTIQEAIEFIKDDHSDL-------DFDFIYWLVTG 51

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
           V D +  +D  I   L + WS  RL      ILR    E++     P +V+++E V +  
Sbjct: 52  VKDHQIVLDETIKPHL-KDWSIDRLLKSDRIILRMATFEILHS-DTPKKVVVNEAVELTK 109

Query: 136 DFFYGDEPKFINAVLDKV 153
            F   D  KF+N VL  +
Sbjct: 110 QFSDDDHYKFVNGVLSNI 127


>gi|110803071|ref|YP_699107.1| transcription antitermination protein NusB [Clostridium perfringens
           SM101]
 gi|119390760|sp|Q0SS00|NUSB_CLOPS RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|110683572|gb|ABG86942.1| N utilization substance protein B [Clostridium perfringens SM101]
          Length = 135

 Score =  139 bits (350), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 37/142 (26%), Positives = 65/142 (45%), Gaps = 10/142 (7%)

Query: 15  RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74
            R  +R   +Q  YQ++I   +  E  + +      +  +L         DL + +  + 
Sbjct: 2   NRVKSREYLLQLAYQMEITSETALETFNSFMENEDISKDDL---------DLAYIKSGLL 52

Query: 75  GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134
           G+ + K+ +D LI S L + W  +R+  +  SILR    E++    VP +V I+E + + 
Sbjct: 53  GIEENKEKLDSLIESQLVK-WKLNRISKVNLSILRISTYEILFAEDVPGKVSINEAIELC 111

Query: 135 HDFFYGDEPKFINAVLDKVSRK 156
             +       FIN VLDKV + 
Sbjct: 112 KKYSDNKSVSFINGVLDKVYKN 133


>gi|289578288|ref|YP_003476915.1| NusB antitermination factor [Thermoanaerobacter italicus Ab9]
 gi|297544568|ref|YP_003676870.1| NusB antitermination factor [Thermoanaerobacter mathranii subsp.
           mathranii str. A3]
 gi|289528001|gb|ADD02353.1| NusB antitermination factor [Thermoanaerobacter italicus Ab9]
 gi|296842343|gb|ADH60859.1| NusB antitermination factor [Thermoanaerobacter mathranii subsp.
           mathranii str. A3]
          Length = 140

 Score =  139 bits (350), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 37/146 (25%), Positives = 65/146 (44%), Gaps = 14/146 (9%)

Query: 15  RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74
            R  AR   V+ LYQ DI     ++I   +   +   D +            E+    + 
Sbjct: 2   NRTEAREWVVKMLYQYDISRFPISKIFDNFYKEKDPGDQK------------EYIENTVK 49

Query: 75  GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134
           G ++  + ID  I    ++ W+ +R+  I  +ILR  + E+I   ++PV + I+E V IA
Sbjct: 50  GAIEHLEEIDKEIEKY-SQNWALNRMPRIDLAILRCSIYEMIYG-NIPVNISINEAVEIA 107

Query: 135 HDFFYGDEPKFINAVLDKVSRKEEIK 160
             +   D   FIN +L    R + ++
Sbjct: 108 KKYSTEDSHVFINGLLGAFVRDKGLE 133


>gi|242242793|ref|ZP_04797238.1| transcription antitermination protein NusB [Staphylococcus
           epidermidis W23144]
 gi|242233929|gb|EES36241.1| transcription antitermination protein NusB [Staphylococcus
           epidermidis W23144]
 gi|319400860|gb|EFV89079.1| transcription antitermination factor NusB [Staphylococcus
           epidermidis FRI909]
          Length = 129

 Score =  139 bits (350), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 38/138 (27%), Positives = 61/138 (44%), Gaps = 13/138 (9%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           R  AR+ A Q L+Q++I        ++  E   F  D   D+       D ++   ++ G
Sbjct: 3   RKDARIQAFQTLFQLEIK----ETDLTIQEAIEFIKDDHSDL-------DFDFIYWLVTG 51

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
           V D +  +D  I   L + WS  RL      ILR    E++     P +V+++E V +  
Sbjct: 52  VKDHQIVLDDTIKPHL-KDWSIDRLLKSDRIILRMATFEILHS-DTPKKVVVNEAVELTK 109

Query: 136 DFFYGDEPKFINAVLDKV 153
            F   D  KF+N VL  +
Sbjct: 110 QFSDDDHYKFVNGVLSNI 127


>gi|227530526|ref|ZP_03960575.1| transcription antitermination protein NusB [Lactobacillus vaginalis
           ATCC 49540]
 gi|227349532|gb|EEJ39823.1| transcription antitermination protein NusB [Lactobacillus vaginalis
           ATCC 49540]
          Length = 136

 Score =  139 bits (350), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 34/149 (22%), Positives = 55/149 (36%), Gaps = 13/149 (8%)

Query: 12  LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71
           +   R   R  A Q L+       +T   I E                 +      + + 
Sbjct: 1   MMPNRHAIREEAFQILFAKQSNPDATLTDIYESL-------------PSHADKIPAYLQT 47

Query: 72  IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
           ++ GV + ++ +D  I+  L   W  +RL      ILR  + E+     VP  V I+E +
Sbjct: 48  LVEGVSEHQEKLDEQITQLLASGWEINRLAQTDLVILRLALYEIQFVDEVPTVVAINEAL 107

Query: 132 CIAHDFFYGDEPKFINAVLDKVSRKEEIK 160
            +A  +      KFIN  L K  R+ E  
Sbjct: 108 ELAKTYSNDKSRKFINGALGKFERQLESN 136


>gi|330466963|ref|YP_004404706.1| nusb antitermination factor [Verrucosispora maris AB-18-032]
 gi|328809934|gb|AEB44106.1| nusb antitermination factor [Verrucosispora maris AB-18-032]
          Length = 144

 Score =  138 bits (349), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 35/139 (25%), Positives = 61/139 (43%), Gaps = 11/139 (7%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           R  AR  A+  L++ D+      E+++ Y         +           L +   ++ G
Sbjct: 12  RRKARKRALDVLFEADLRDRPPVEVLAGYIERIEKPRPDH----------LGYAVGLVEG 61

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
           V      ID LISS   E W+  R+ ++  ++ R  V EL+    +   V ISE V +A 
Sbjct: 62  VAGHLDRIDELISSY-AEGWTLDRMPVVDRNLARIAVYELLYVDEIDDAVAISEAVELAR 120

Query: 136 DFFYGDEPKFINAVLDKVS 154
                D P+F+N +L +++
Sbjct: 121 QMSTDDSPRFLNGLLGRIA 139


>gi|326201953|ref|ZP_08191823.1| NusB antitermination factor [Clostridium papyrosolvens DSM 2782]
 gi|325987748|gb|EGD48574.1| NusB antitermination factor [Clostridium papyrosolvens DSM 2782]
          Length = 145

 Score =  138 bits (349), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 40/142 (28%), Positives = 67/142 (47%), Gaps = 12/142 (8%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           R  +R +A++ LYQ++I      E I+               +      D E+ + I+ G
Sbjct: 3   RRASRESAMKLLYQLEIQKTDRDEQINMALE-----------DESLTENDREYIKGIVDG 51

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
           V D+   +D +I    T  W  +RL  I  SILR G+ E++    +P  V ++E V +A 
Sbjct: 52  VFDKTPVLDGIIEKKAT-GWKINRLSKIDLSILRIGIYEILYRDDIPFSVSVNEAVELAK 110

Query: 136 DFFYGDEPKFINAVLDKVSRKE 157
            +   D   F+N +L KVS+ +
Sbjct: 111 KYSNEDAGAFVNGLLAKVSKSD 132


>gi|291456359|ref|ZP_06595749.1| transcription antitermination factor NusB [Bifidobacterium breve
           DSM 20213]
 gi|291381636|gb|EFE89154.1| transcription antitermination factor NusB [Bifidobacterium breve
           DSM 20213]
          Length = 176

 Score =  138 bits (349), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 35/150 (23%), Positives = 62/150 (41%), Gaps = 12/150 (8%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           R  AR  A+  LY+ D  G     ++ E   +        D           +   I+ G
Sbjct: 3   RSTARKRALNTLYEADEKGQDILSLLDERIAHPGAQTPLPD-----------YAIDIVKG 51

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
           V + ++ ID+ +    +  W   R+ ++  +ILR    E++    VP +V I E + +A 
Sbjct: 52  VAEHRRQIDMTLDDH-STGWKVRRMGVVDRNILRIAAWEILFNDEVPDKVAIDEALALAK 110

Query: 136 DFFYGDEPKFINAVLDKVSRKEEIKRSGCV 165
                D P FI+ +L  V   +  + +G V
Sbjct: 111 TLCDDDSPAFIHGLLSAVCNAKNTEPAGSV 140


>gi|222099929|ref|YP_002534497.1| N utilization substance protein B like protein [Thermotoga
           neapolitana DSM 4359]
 gi|221572319|gb|ACM23131.1| N utilization substance protein B like protein [Thermotoga
           neapolitana DSM 4359]
          Length = 135

 Score =  138 bits (349), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 41/144 (28%), Positives = 68/144 (47%), Gaps = 14/144 (9%)

Query: 20  RLAAVQALYQIDII-GCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMD 78
           RLA  +AL+Q +        +I+ E     +    + D             R  I  + +
Sbjct: 2   RLAVFKALFQHEFRKDEDLEQILEEILDNSYDEKAKKD------------ARRYIRNIKE 49

Query: 79  RKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFF 138
             Q ID LIS  L E+W+  RL  +  +ILR G  EL+    +P+EV I+E + IA  + 
Sbjct: 50  HLQTIDDLISRYL-ERWTIDRLSAVDRNILRLGTYELLYEKDIPIEVTINEAIEIAKRYG 108

Query: 139 YGDEPKFINAVLDKVSRKEEIKRS 162
             +  KF+N +LD+++++   K  
Sbjct: 109 TENSGKFVNGILDRIAKENAPKEK 132


>gi|255658168|ref|ZP_05403577.1| transcription antitermination factor NusB [Mitsuokella multacida
           DSM 20544]
 gi|260849476|gb|EEX69483.1| transcription antitermination factor NusB [Mitsuokella multacida
           DSM 20544]
          Length = 143

 Score =  138 bits (349), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 31/145 (21%), Positives = 61/145 (42%), Gaps = 6/145 (4%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           R  AR  A+QAL+Q+D+    + +   E        DT L         D  +   ++HG
Sbjct: 3   RRQAREVALQALFQLDLNPAESAD--QEEMQETLAIDTALGEAEAMSAHDRAFVAQLVHG 60

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHS--VPVEVIISEYVCI 133
                + ID  I++  + +W   R+  +  ++ R    E+        P  + I+E V +
Sbjct: 61  TRANLEAIDAQIAAN-SREWKVERMAAVDRNLTRMATYEMCFAEEKLTP-NIAINEAVEL 118

Query: 134 AHDFFYGDEPKFINAVLDKVSRKEE 158
           A  +   D  +++N +L  + +  +
Sbjct: 119 AKKYGTDDSSRYVNGILGAIMKSAQ 143


>gi|229815218|ref|ZP_04445554.1| hypothetical protein COLINT_02264 [Collinsella intestinalis DSM
           13280]
 gi|229809228|gb|EEP44994.1| hypothetical protein COLINT_02264 [Collinsella intestinalis DSM
           13280]
          Length = 216

 Score =  138 bits (349), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 36/154 (23%), Positives = 67/154 (43%), Gaps = 16/154 (10%)

Query: 9   DLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEW 68
            LK++  R +AR  A+Q L+Q ++   S  ++++         D  L    +       +
Sbjct: 3   SLKVNRGRTLARSQALQILFQSEMRKVSVEDVLA--------GDYTLSKGPL-----APY 49

Query: 69  FRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIEC--HSVPVEVI 126
              I  GV   +  ID  +   ++  W+  R+     ++LRA V EL      ++   V+
Sbjct: 50  AIEIARGVSANRDRIDSAL-RAVSANWTLERMPGADRNLLRAAVYELYFQVADTLDAAVV 108

Query: 127 ISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIK 160
           I+E V IA  +   +   F+N VL ++ R   + 
Sbjct: 109 INEAVEIAKAYGTDESAGFVNGVLGRIVRDRHLP 142


>gi|189485423|ref|YP_001956364.1| transcription antitermination factor NusB [uncultured Termite group
           1 bacterium phylotype Rs-D17]
 gi|170287382|dbj|BAG13903.1| transcription antitermination factor NusB [uncultured Termite group
           1 bacterium phylotype Rs-D17]
          Length = 142

 Score =  138 bits (349), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 35/140 (25%), Positives = 60/140 (42%), Gaps = 12/140 (8%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           R  AR  ++  LY +D        I + +  Y                    +   +  G
Sbjct: 4   RRKARECSLHMLYAVDNCNVPIESIYNSFAVY-----------FPKGEAYRMFALDLFKG 52

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
           V D K+ +D LI  C  + W   R+  +  +I+R    E++   ++P+ VII E V I+ 
Sbjct: 53  VCDNKEDLDSLIKQC-AKNWEIERMAAVDRNIIRLATYEIMATTNIPIRVIIDEAVEISK 111

Query: 136 DFFYGDEPKFINAVLDKVSR 155
            +   D  KF+N +LDK+ +
Sbjct: 112 KYSTKDSSKFVNGILDKLKK 131


>gi|331697319|ref|YP_004333558.1| NusB antitermination factor [Pseudonocardia dioxanivorans CB1190]
 gi|326952008|gb|AEA25705.1| NusB antitermination factor [Pseudonocardia dioxanivorans CB1190]
          Length = 139

 Score =  138 bits (349), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 33/141 (23%), Positives = 66/141 (46%), Gaps = 13/141 (9%)

Query: 14  HRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVII 73
             R  AR  A+  L++ +  G    E++                E+       ++  +++
Sbjct: 2   RARTKARKRALDILFESEARGDDPLEVLRNRR------------ETDDAPPVSDYAALLV 49

Query: 74  HGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCI 133
            GV++ ++ ID L++    E W+ +R+  +  ++LR GV EL+    +   V I+E V +
Sbjct: 50  QGVVEHRERIDQLLAEH-AEGWTVARMPAVDRTLLRIGVFELLWVDEIDDPVAITEAVEL 108

Query: 134 AHDFFYGDEPKFINAVLDKVS 154
           A      D P+F+N VL +++
Sbjct: 109 ARTLSTDDSPRFLNGVLGRIA 129


>gi|300854298|ref|YP_003779282.1| nusB-like protein [Clostridium ljungdahlii DSM 13528]
 gi|300434413|gb|ADK14180.1| nusB-like protein [Clostridium ljungdahlii DSM 13528]
          Length = 158

 Score =  138 bits (349), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 33/158 (20%), Positives = 67/158 (42%), Gaps = 11/158 (6%)

Query: 15  RRGIARLAAVQALYQIDIIGCSTTEIISEYET--YRFCADTELDVESV--------YLHV 64
            R  +R   ++ L+++ I       +++  E    +     E D              +V
Sbjct: 2   NRKKSRELIMKLLFEMSINREDFRSVLANLEDNLEKKIESKETDGAEEVYSENIDKLKNV 61

Query: 65  DLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVE 124
           D+E+ + ++ G+ + K  +D  I   L   W+ +RL  +  +ILR    E +    +P +
Sbjct: 62  DMEYVKRVVKGIEENKDSLDKEIEKYL-RNWTLNRLPKVDAAILRICTYEFLYEQDIPEK 120

Query: 125 VIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRS 162
           V I+E + +A  +       FIN VL  + + + I + 
Sbjct: 121 VSINEAIELAKKYSSEKSAPFINGVLGNMIKDKSISKQ 158


>gi|262283503|ref|ZP_06061269.1| transcription antitermination protein NusB [Streptococcus sp.
           2_1_36FAA]
 gi|262260994|gb|EEY79694.1| transcription antitermination protein NusB [Streptococcus sp.
           2_1_36FAA]
          Length = 141

 Score =  138 bits (349), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 39/142 (27%), Positives = 64/142 (45%), Gaps = 9/142 (6%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           R   R  A QAL  ++       E I E   + +  D E + +         +   +++G
Sbjct: 9   RRDLRERAFQALMSLEY-----DEDIVEACRFAYLHDKEEEEQVELPI----FLLNLVNG 59

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
           VM  K  +D  I+  L   W+  RL ++  +ILR G+ EL+E    P  V ++E + +A 
Sbjct: 60  VMQSKSVLDDKITQYLKAGWTLDRLTLVEKNILRLGLYELLEYDETPQLVAVNEAIELAK 119

Query: 136 DFFYGDEPKFINAVLDKVSRKE 157
            F      KFIN +L +   +E
Sbjct: 120 KFSDEKSSKFINGILSQFVTEE 141


>gi|157364365|ref|YP_001471132.1| transcription antitermination protein NusB [Thermotoga lettingae
           TMO]
 gi|254772664|sp|A8F7D4|NUSB_THELT RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|157314969|gb|ABV34068.1| NusB antitermination factor [Thermotoga lettingae TMO]
          Length = 140

 Score =  138 bits (349), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 41/141 (29%), Positives = 63/141 (44%), Gaps = 13/141 (9%)

Query: 15  RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74
           RR   R    + ++Q +    S   ++ +              +S  +  D       + 
Sbjct: 3   RRSKMRDLVFKVIFQNEFRNDSIETVLEDILHIS---------KSGLMKAD---ITRYVK 50

Query: 75  GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134
           G+ +    ID  IS CL E WS  RL ++  SILR    EL+    VP+EV + E V IA
Sbjct: 51  GIYENLPSIDEKISLCL-ENWSLQRLSLVDRSILRLATYELLYESDVPIEVTLDEAVEIA 109

Query: 135 HDFFYGDEPKFINAVLDKVSR 155
             +   +  KF+N VLDKV++
Sbjct: 110 KKYGTENSSKFVNGVLDKVAK 130


>gi|225619886|ref|YP_002721143.1| transcription antitermination protein NusB [Brachyspira
           hyodysenteriae WA1]
 gi|225214705|gb|ACN83439.1| transcription antitermination protein NusB [Brachyspira
           hyodysenteriae WA1]
          Length = 181

 Score =  138 bits (348), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 46/157 (29%), Positives = 73/157 (46%), Gaps = 13/157 (8%)

Query: 3   IQDNKKDLKLSH--RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESV 60
            ++N KDL LS    R  AR+ AV +LY  +I      E I+E  ++        D +  
Sbjct: 34  NKENIKDLDLSSYGARRQARIYAVMSLYSYEINDR--KETINEILSF--------DYDKK 83

Query: 61  YLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHS 120
                 E+ R ++ G ++  + ID LI    +  W   R+  +  SI+R  +  LI    
Sbjct: 84  IPENIFEFTRTLVEGTINNLERIDNLIEKY-SNNWDIKRIQYVDKSIIRMSIYSLIFLKD 142

Query: 121 VPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKE 157
           +P  V+I E V I+  F   D  KF+N +LD +  K+
Sbjct: 143 IPKSVVIDEAVEISKIFSDKDSYKFVNGILDGIQEKD 179


>gi|119716645|ref|YP_923610.1| transcription antitermination factor NusB [Nocardioides sp. JS614]
 gi|166215705|sp|A1SJD8|NUSB_NOCSJ RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|119537306|gb|ABL81923.1| NusB antitermination factor [Nocardioides sp. JS614]
          Length = 135

 Score =  138 bits (348), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 36/142 (25%), Positives = 65/142 (45%), Gaps = 14/142 (9%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           R  AR  A+  L+  D+ G      +      R  A+ E            ++   ++ G
Sbjct: 4   RSKARKRALDVLFASDVRGEDAVAALD-----RAIAEGEGPTN--------DYTATLVRG 50

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
           V++ +  ID L+SS  +  W+  R+  +  ++LR GV EL+    VP  V +SE + +  
Sbjct: 51  VVEHQARIDELLSSY-SHGWALDRMPAVDRNVLRLGVWELLYADDVPDAVAVSEAMALVT 109

Query: 136 DFFYGDEPKFINAVLDKVSRKE 157
           D    + P+F+N +L  + R +
Sbjct: 110 DLSTDESPQFVNGILGSIVRNK 131


>gi|270293308|ref|ZP_06199517.1| N utilization substance protein B [Streptococcus sp. M143]
 gi|270278157|gb|EFA24005.1| N utilization substance protein B [Streptococcus sp. M143]
          Length = 146

 Score =  138 bits (348), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 40/158 (25%), Positives = 68/158 (43%), Gaps = 12/158 (7%)

Query: 1   MTIQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESV 60
           MT   +     L  RR + R  A QAL  ++  G             RF    + +   V
Sbjct: 1   MTRTSSMTSPLLESRREL-RKCAFQALMSLEF-GTDVET------ACRFAYTHDREDTDV 52

Query: 61  YLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHS 120
            L     +   ++ GV  +K+ +D  I+  L   W+  RL ++  ++LR GV E+     
Sbjct: 53  QLPA---FLTELVSGVQAKKEELDKQITQHLKAGWTIERLTLVERNLLRLGVFEITSF-D 108

Query: 121 VPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEE 158
            P  V ++E + +A DF      +FIN +L +   +E+
Sbjct: 109 TPQLVAVNEAIELAKDFSDQKSARFINGLLSQFVTEEQ 146


>gi|304312173|ref|YP_003811771.1| N utilization substance protein B, transcription termination factor
           [gamma proteobacterium HdN1]
 gi|301797906|emb|CBL46128.1| N utilization substance protein B, transcription termination factor
           [gamma proteobacterium HdN1]
          Length = 136

 Score =  138 bits (348), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 33/125 (26%), Positives = 61/125 (48%), Gaps = 13/125 (10%)

Query: 32  IIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCL 91
           + G S + I +++ T           ++     D+ +F  ++HGV      +D  IS  L
Sbjct: 1   MTGDSLSSIEAQFRT-----------DNDMRKTDVAYFHELLHGVPSCVADLDSAISPFL 49

Query: 92  TEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLD 151
             +   + LD +  +ILR    EL++   +P  V I+E + +A  F   +  K++N VLD
Sbjct: 50  DRE--ITELDQVERAILRLATYELLKRQDIPYRVAINEGIELAKTFGATESHKYVNGVLD 107

Query: 152 KVSRK 156
           KV+++
Sbjct: 108 KVAQR 112


>gi|187917985|ref|YP_001883548.1| transcription antitermination protein NusB [Borrelia hermsii DAH]
 gi|119860833|gb|AAX16628.1| N utilization substance protein B [Borrelia hermsii DAH]
          Length = 146

 Score =  138 bits (348), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 42/144 (29%), Positives = 68/144 (47%), Gaps = 10/144 (6%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           R  AR+ A Q +Y ID+   +   I   +       D E D++         ++ V+++G
Sbjct: 6   RHKARVLAFQKIYSIDVNCKAKDNIYDIFGLEDHGVDLEEDLKL--------FYSVLVNG 57

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECH-SVPVEVIISEYVCIA 134
             D  + ID LIS  ++  W   R+D +  +ILR  V  L   +  VP  VII E + IA
Sbjct: 58  TCDNLESIDKLISD-ISLNWRLDRMDKVDLAILRVSVYSLKFQNLDVPKRVIIDEAILIA 116

Query: 135 HDFFYGDEPKFINAVLDKVSRKEE 158
             +   +  KF+N +LD + +  E
Sbjct: 117 KKYGSKNSYKFVNGILDALLKDME 140


>gi|323340820|ref|ZP_08081072.1| transcription antitermination factor NusB [Lactobacillus ruminis
           ATCC 25644]
 gi|323091943|gb|EFZ34563.1| transcription antitermination factor NusB [Lactobacillus ruminis
           ATCC 25644]
          Length = 128

 Score =  138 bits (348), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 32/138 (23%), Positives = 57/138 (41%), Gaps = 13/138 (9%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           R   R  A Q L+ +     +   + ++        D E            E+   ++ G
Sbjct: 3   RHDIRRLAFQTLFAM---SSNPDAVATDVYQTVLGKDIEAP----------EYLTQLVDG 49

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
           V +    ID  IS+ L + W  SRL+     ++R  V E+     VP +V ++E + ++ 
Sbjct: 50  VNEHLAEIDEAISAHLKKGWPISRLNKTDLILMRIAVYEIKFVEEVPNKVSLNEALELSK 109

Query: 136 DFFYGDEPKFINAVLDKV 153
           +F      +FIN VL  +
Sbjct: 110 EFSDETSRRFINGVLSNL 127


>gi|227363166|ref|ZP_03847300.1| transcription antitermination protein NusB [Lactobacillus reuteri
           MM2-3]
 gi|227071772|gb|EEI10061.1| transcription antitermination protein NusB [Lactobacillus reuteri
           MM2-3]
          Length = 141

 Score =  138 bits (348), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 35/151 (23%), Positives = 62/151 (41%), Gaps = 12/151 (7%)

Query: 11  KLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFR 70
           K+S  R + R  A Q L+ +     S  +I + YE      + ++            +  
Sbjct: 3   KMSLNRHMIREEAFQVLFALQ--SDSEADIQTVYEAIPHHDEKQIP----------PYLL 50

Query: 71  VIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEY 130
            +++GV + +  +D  I+  L   W+ +RL      ILR  + E+    +VP  V I+E 
Sbjct: 51  TLVNGVREHQDQLDEQINDLLASGWTINRLAKPDLVILRLALFEIQYAENVPTVVAINEA 110

Query: 131 VCIAHDFFYGDEPKFINAVLDKVSRKEEIKR 161
           + +   F      KFIN  L K  ++     
Sbjct: 111 LELTKTFSSDKSRKFINGALGKFEKQVNENN 141


>gi|225023290|ref|ZP_03712482.1| hypothetical protein EIKCOROL_00142 [Eikenella corrodens ATCC
           23834]
 gi|224943935|gb|EEG25144.1| hypothetical protein EIKCOROL_00142 [Eikenella corrodens ATCC
           23834]
          Length = 145

 Score =  138 bits (348), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 44/158 (27%), Positives = 67/158 (42%), Gaps = 18/158 (11%)

Query: 10  LKLSHR--RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLE 67
           +K  +R  R  AR  AVQALYQ  +      E+              +     +   D E
Sbjct: 1   MKPKNRTPRRRAREFAVQALYQAALNQLPDAEVA-----------KNIRENEYFAKADNE 49

Query: 68  WFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVII 127
            F  I  GV  +++ +  +I   L        L  I C++L A   EL +    P  VII
Sbjct: 50  LFTAIFFGVQAKRRELMQIIRPLLDRDEK--DLSPIECAVLLAAAFELRDMPETPYPVII 107

Query: 128 SEYVCIAHDFFYGDEPKFINAVLDKVS---RKEEIKRS 162
           +E + +   F   D  KF+N +LDK++   R  + KR+
Sbjct: 108 NEAIEVTKTFGGIDGHKFVNGILDKLAAELRPNDPKRA 145


>gi|168705385|ref|ZP_02737662.1| transcription antitermination protein NusB [Gemmata obscuriglobus
           UQM 2246]
          Length = 139

 Score =  138 bits (348), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 40/150 (26%), Positives = 68/150 (45%), Gaps = 13/150 (8%)

Query: 22  AAVQALYQIDIIGCSTT-EIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRK 80
             +Q L+Q D        + I ++   R   D E+            +   +  GV  RK
Sbjct: 1   MVLQLLFQWDQNPTKVPRKAIQQFARDRLLGDAEMST----------YALSLYDGVAGRK 50

Query: 81  QHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIE-CHSVPVEVIISEYVCIAHDFFY 139
             ID  + S  T  W  +R+  +  ++LR G  EL+      P+EV+I+E + +A  F  
Sbjct: 51  DAIDEALKSAAT-NWRLTRMTPVDRNVLRLGAFELLFDAAPQPLEVVINEAIELAKRFGS 109

Query: 140 GDEPKFINAVLDKVSRKEEIKRSGCVSAIT 169
            D P F+N VLD+V +  + +++G  S  +
Sbjct: 110 EDSPAFVNGVLDRVGKMRDERKAGAGSGAS 139


>gi|227515668|ref|ZP_03945717.1| transcription antitermination protein NusB [Lactobacillus fermentum
           ATCC 14931]
 gi|260663543|ref|ZP_05864433.1| transcription antitermination factor NusB [Lactobacillus fermentum
           28-3-CHN]
 gi|227085971|gb|EEI21283.1| transcription antitermination protein NusB [Lactobacillus fermentum
           ATCC 14931]
 gi|260552084|gb|EEX25137.1| transcription antitermination factor NusB [Lactobacillus fermentum
           28-3-CHN]
          Length = 139

 Score =  138 bits (348), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 34/142 (23%), Positives = 53/142 (37%), Gaps = 11/142 (7%)

Query: 12  LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71
           ++ +R   R  A Q L+ +     S  E+  E            +           +   
Sbjct: 1   MTFKRRKIREVAFQTLFAM----ASDPEVDREQLYKELLPLAPQEEVP-------AYLEE 49

Query: 72  IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
           ++ GV + +   D  I   L   WS SR++     ILR  + E+     VPV V I E +
Sbjct: 50  LVTGVSEHQAEFDQEIEGSLAAGWSLSRVEKPNLIILRLALYEMKYVDDVPVAVAIDEAL 109

Query: 132 CIAHDFFYGDEPKFINAVLDKV 153
            +   F      KFIN VL  +
Sbjct: 110 EMTKKFSDDKSRKFINGVLGHI 131


>gi|197301786|ref|ZP_03166856.1| hypothetical protein RUMLAC_00512 [Ruminococcus lactaris ATCC
           29176]
 gi|197299226|gb|EDY33756.1| hypothetical protein RUMLAC_00512 [Ruminococcus lactaris ATCC
           29176]
          Length = 140

 Score =  138 bits (348), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 40/143 (27%), Positives = 61/143 (42%), Gaps = 10/143 (6%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           R   R    + L+Q +       E + E+  Y F               D ++ +     
Sbjct: 3   RTELREHIFKLLFQEEFN---REEDMQEHLKYYFMT------LENAADKDKDYIQEKYEA 53

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
           V      ID LI+    + W  +R++ +  +ILR  V E+     VPV V I+E V +A 
Sbjct: 54  VAGHIAEIDELINQY-AKGWKTTRMNKVDLAILRLAVYEMKWDEEVPVGVAINEAVELAK 112

Query: 136 DFFYGDEPKFINAVLDKVSRKEE 158
            F  GD P FIN VL K++R  +
Sbjct: 113 RFSGGDSPSFINGVLGKIARSAD 135


>gi|169831182|ref|YP_001717164.1| NusB antitermination factor [Candidatus Desulforudis audaxviator
           MP104C]
 gi|238688239|sp|B1I3I9|NUSB_DESAP RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|169638026|gb|ACA59532.1| NusB antitermination factor [Candidatus Desulforudis audaxviator
           MP104C]
          Length = 138

 Score =  138 bits (348), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 34/148 (22%), Positives = 68/148 (45%), Gaps = 12/148 (8%)

Query: 15  RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74
           +R   R  A+Q L+Q ++   S     +      F  +TE          D  + + ++ 
Sbjct: 2   KRRRQRETALQVLFQAEVARISGERAFARTMEL-FGLNTE----------DFAYAQELVD 50

Query: 75  GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134
           GV+ +   +D +IS  ++ +W   R+  +  +I+R  + E+     +P+ V ++E + +A
Sbjct: 51  GVLAKVDRLDRIISR-VSHEWRLERMANVDRNIIRLALYEVFFRDDIPINVAVNEALELA 109

Query: 135 HDFFYGDEPKFINAVLDKVSRKEEIKRS 162
             F   D  +F+N +L KV  + E  R 
Sbjct: 110 RTFGTEDSRRFVNGILGKVVEEPEEYRP 137


>gi|187779509|ref|ZP_02995982.1| hypothetical protein CLOSPO_03105 [Clostridium sporogenes ATCC
           15579]
 gi|187773134|gb|EDU36936.1| hypothetical protein CLOSPO_03105 [Clostridium sporogenes ATCC
           15579]
          Length = 143

 Score =  137 bits (347), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 41/142 (28%), Positives = 67/142 (47%), Gaps = 4/142 (2%)

Query: 15  RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCAD--TELDVESVYLH-VDLEWFRV 71
            R  +R  A++ L+Q  +   +    +   +  R   +   E D ESV L  VD+++ + 
Sbjct: 2   NRRKSREVAMRLLFQTTLNEENLEVALENLKDVRESEESAKEKDYESVDLKDVDIDYVKR 61

Query: 72  IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
           II G+ + K+ ID  I   L + W   RL  +  SILR    EL     +P +V ++E +
Sbjct: 62  IIKGIEENKEEIDEKIKGNL-KNWKIERLSKVDLSILRLCTYELKFEEDIPSKVSVNEAI 120

Query: 132 CIAHDFFYGDEPKFINAVLDKV 153
            +A  +       FIN VL K+
Sbjct: 121 ELAKKYSGEKAATFINGVLGKM 142


>gi|15902434|ref|NP_357984.1| transcription antitermination protein NusB [Streptococcus
           pneumoniae R6]
 gi|183603887|ref|ZP_02722699.2| transcription antitermination factor NusB [Streptococcus pneumoniae
           MLV-016]
 gi|15457952|gb|AAK99194.1| Transcription termination protein [Streptococcus pneumoniae R6]
 gi|183577498|gb|EDT98026.1| transcription antitermination factor NusB [Streptococcus pneumoniae
           MLV-016]
          Length = 146

 Score =  137 bits (347), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 40/158 (25%), Positives = 68/158 (43%), Gaps = 12/158 (7%)

Query: 1   MTIQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESV 60
           MT   +     L  RR + R  A QAL  ++  G             RF    + +   V
Sbjct: 1   MTRTSSMTSPLLESRRQL-RKCAFQALMSLEF-GTDVET------ACRFAYTHDREDTDV 52

Query: 61  YLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHS 120
            L     +   ++ GV  +K+ +D  I+  L   W+  RL ++  ++LR GV E+     
Sbjct: 53  QLPA---FLIDLVSGVQAKKEELDKQITQHLKAGWTIERLTLVERNLLRLGVFEITSF-D 108

Query: 121 VPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEE 158
            P  V ++E + +A DF      +FIN +L +   +E+
Sbjct: 109 TPQLVAVNEAIELAKDFSDQKSARFINGLLSQFVTEEQ 146


>gi|73662539|ref|YP_301320.1| transcription antitermination protein NusB [Staphylococcus
           saprophyticus subsp. saprophyticus ATCC 15305]
 gi|119390831|sp|Q49XW9|NUSB_STAS1 RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|72495054|dbj|BAE18375.1| putative antitermination protein [Staphylococcus saprophyticus
           subsp. saprophyticus ATCC 15305]
          Length = 128

 Score =  137 bits (347), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 41/138 (29%), Positives = 63/138 (45%), Gaps = 13/138 (9%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           R  +R  A Q L+Q+++        ++  E   F  D   D+E        E+   ++ G
Sbjct: 3   RKESRTQAFQTLFQLEMKNSD----LTIEEAISFIKDDNPDLE-------FEFISWLVTG 51

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
           V D +  +D  I   L + W+ +RL      ILR    E++   S P +VII+E V +A 
Sbjct: 52  VKDHEVVLDEKIQPHL-KDWTLARLLKSDRIILRMSTFEMLHS-STPQKVIINEAVELAK 109

Query: 136 DFFYGDEPKFINAVLDKV 153
            F   D  KFIN VL  +
Sbjct: 110 QFSDDDHYKFINGVLSNI 127


>gi|220929324|ref|YP_002506233.1| NusB antitermination factor [Clostridium cellulolyticum H10]
 gi|254772626|sp|B8I3B0|NUSB_CLOCE RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|219999652|gb|ACL76253.1| NusB antitermination factor [Clostridium cellulolyticum H10]
          Length = 145

 Score =  137 bits (347), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 38/140 (27%), Positives = 65/140 (46%), Gaps = 12/140 (8%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           R  +R  A++ LYQ++I      E I+               +      D E+ + I+ G
Sbjct: 3   RRASRETAMKLLYQLEIQKTDRDEQINMALE-----------DESLTKNDREYIKGIVDG 51

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
           V ++   +D +I    T  W  +RL  I  S+LR G+ E++    +P  V ++E V +A 
Sbjct: 52  VYEKTPVLDGIIEKKAT-GWKINRLSKIDLSVLRIGIYEILYRDDIPFSVSVNEAVELAK 110

Query: 136 DFFYGDEPKFINAVLDKVSR 155
            +   D   F+N +L KVS+
Sbjct: 111 KYSNEDAGAFVNGLLAKVSK 130


>gi|312195541|ref|YP_004015602.1| NusB antitermination factor [Frankia sp. EuI1c]
 gi|311226877|gb|ADP79732.1| NusB antitermination factor [Frankia sp. EuI1c]
          Length = 135

 Score =  137 bits (347), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 34/138 (24%), Positives = 54/138 (39%), Gaps = 14/138 (10%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           R  +R  A+  LY+ D+   S  EI++           E             +   ++  
Sbjct: 4   RSKSRKRALDILYEADLRSTSPLEILAARSVQNDPPVNE-------------YTSGLVRD 50

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
           V +    ID  I     E W+  R+  +  +ILR  VLE++    VP  V I E V +A 
Sbjct: 51  VTEHLGRIDGFIGEH-AEGWTLERMPAVDRNILRIAVLEMMWRDDVPDRVAIDEAVELAK 109

Query: 136 DFFYGDEPKFINAVLDKV 153
                  P F+N +L  +
Sbjct: 110 SVSTDRSPAFVNGLLASL 127


>gi|187477080|ref|YP_785104.1| transcription antitermination protein NusB [Bordetella avium 197N]
 gi|115421666|emb|CAJ48176.1| N utilization substance protein B [Bordetella avium 197N]
          Length = 156

 Score =  137 bits (347), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 39/150 (26%), Positives = 64/150 (42%), Gaps = 12/150 (8%)

Query: 21  LAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRK 80
             A+Q +Y   + G   T+   E + +       L     +   D +WF+ ++HGV+   
Sbjct: 16  EFALQGVYAWLLRGGQDTQDAGEIDAH-------LRDAEDFSEADAQWFKTLLHGVLREA 68

Query: 81  QHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYG 140
             +    +  +      + L  +   IL  G  EL+    VP +V I+E V +A  F   
Sbjct: 69  PTLREHFTPYIDR--PLAELSPVEHGILLIGSYELVHHVEVPYKVAINEAVELAKSFGGT 126

Query: 141 DEPKFINAVLDKVSRKEEIKRSGCVSAITQ 170
           D  KF+N VLDK++      R+  V A  Q
Sbjct: 127 DGFKFVNGVLDKLAADV---RTAEVEAAAQ 153


>gi|300312879|ref|YP_003776971.1| transcription antiterminator (L factor) transcription regulator
           protein [Herbaspirillum seropedicae SmR1]
 gi|300075664|gb|ADJ65063.1| transcription antiterminator (L factor) transcription regulator
           protein [Herbaspirillum seropedicae SmR1]
          Length = 156

 Score =  137 bits (347), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 34/168 (20%), Positives = 65/168 (38%), Gaps = 17/168 (10%)

Query: 1   MTIQDNKKDLKLSHR-RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVES 59
           M+ +    +   +   R  AR  A+Q LYQ  +       I +            +    
Sbjct: 1   MSNKTQHANSNKNRTPRHRAREFALQGLYQWLLNHEDAGAIEA-----------HIREAH 49

Query: 60  VYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECH 119
            +   D E F  ++ G +   + +   ++  +        L  +  + L  G  EL    
Sbjct: 50  GFDKADAEHFDTLLTGAIRDAEKLRAGLAPLIDR--PIKELSPVEHAALLIGAYELQNHI 107

Query: 120 SVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVS---RKEEIKRSGC 164
            +P +V+I+E V +   F   D  K++N VLD+ +   R  E++ +G 
Sbjct: 108 EIPYKVVINEAVELTKSFGGIDGHKYVNGVLDRFAAQTRATEVEAAGR 155


>gi|282882096|ref|ZP_06290737.1| transcription antitermination factor NusB [Peptoniphilus lacrimalis
           315-B]
 gi|300814940|ref|ZP_07095168.1| transcription antitermination factor NusB [Peptoniphilus sp. oral
           taxon 836 str. F0141]
 gi|281298126|gb|EFA90581.1| transcription antitermination factor NusB [Peptoniphilus lacrimalis
           315-B]
 gi|300510910|gb|EFK38182.1| transcription antitermination factor NusB [Peptoniphilus sp. oral
           taxon 836 str. F0141]
          Length = 139

 Score =  137 bits (347), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 35/143 (24%), Positives = 68/143 (47%), Gaps = 12/143 (8%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           R  AR+ A+Q LY +++    + E I ++      +++E             +   +I  
Sbjct: 3   RKNARVGAMQLLYSMELNKDFSQENIEKFFENYDFSESEQ-----------SYINSVISE 51

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
           +++    +D ++S  L + W+  RL  +   ILR  + E +    +PVEV I+E V IA 
Sbjct: 52  LVNNLDSVDKVLSDNL-QGWTIPRLATVDREILRVAIFEFLYRKDIPVEVSINEAVEIAK 110

Query: 136 DFFYGDEPKFINAVLDKVSRKEE 158
            +   + PKF+N +L  + +  +
Sbjct: 111 KYSSEESPKFVNGILASILKNLK 133


>gi|269127152|ref|YP_003300522.1| NusB antitermination factor [Thermomonospora curvata DSM 43183]
 gi|268312110|gb|ACY98484.1| NusB antitermination factor [Thermomonospora curvata DSM 43183]
          Length = 138

 Score =  137 bits (347), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 35/140 (25%), Positives = 66/140 (47%), Gaps = 12/140 (8%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           R  AR  A+  LY  ++ G   T+++++         +             E    +I G
Sbjct: 4   RTKARKLALDILYAAEMRGERPTDVLAQRGRPNTDEISA-----------REHAVRLIEG 52

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
           V + ++ ID L+++  T  W+  R+  +  ++LR G  EL+    VP  V I+E V +A 
Sbjct: 53  VQEHRERIDELLATYAT-GWTLDRMPAVDRNLLRLGAYELLWVDDVPDGVAIAEAVALAT 111

Query: 136 DFFYGDEPKFINAVLDKVSR 155
           +    + P+F+N +L ++ R
Sbjct: 112 ELSTDESPRFVNGLLSRLQR 131


>gi|71898912|ref|ZP_00681079.1| Antitermination protein NusB [Xylella fastidiosa Ann-1]
 gi|71731324|gb|EAO33388.1| Antitermination protein NusB [Xylella fastidiosa Ann-1]
          Length = 157

 Score =  137 bits (347), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 34/135 (25%), Positives = 58/135 (42%), Gaps = 16/135 (11%)

Query: 28  YQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLI 87
           Y   I G    ++I+ +             E  Y   DL +F  ++ GV+     +D  +
Sbjct: 34  YAWQISGGVAKQVIAHFAH-----------EQAYEVADLVYFEDLVEGVLTHCAELDEKL 82

Query: 88  SSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFIN 147
           +  L    +   +D I  ++LR G  EL+    VP  V+I+E +  A  F       ++N
Sbjct: 83  TPYLDR--TIEEVDAIERAVLRLGAYELLYRQDVPYRVVINEAIMTAKRFGSKYGHTYVN 140

Query: 148 AVLDKVS---RKEEI 159
            VLD+ +   RK E+
Sbjct: 141 GVLDRAALVLRKVEV 155


>gi|148272974|ref|YP_001222535.1| putative antitermination protein [Clavibacter michiganensis subsp.
           michiganensis NCPPB 382]
 gi|166215681|sp|A5CRY5|NUSB_CLAM3 RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|147830904|emb|CAN01848.1| putative antitermination protein [Clavibacter michiganensis subsp.
           michiganensis NCPPB 382]
          Length = 137

 Score =  137 bits (347), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 35/139 (25%), Positives = 61/139 (43%), Gaps = 9/139 (6%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           R  AR  A+  LY  DI G S    ++         + +            ++ R I  G
Sbjct: 4   RTKARKRALDVLYVADIRGESIPATLA--------VEQQRAAAEPDRQASWQYAREIAEG 55

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
            +  +  ID LI +  +  W+ +R+  +  +ILR G+ E++    VP  V ISE V +A 
Sbjct: 56  FVAHQDEIDELIETY-SVNWTLARMPAVDRAILRIGIWEILFNADVPHGVAISESVDLAS 114

Query: 136 DFFYGDEPKFINAVLDKVS 154
                +   F+N +L +++
Sbjct: 115 SLSTDESASFVNGMLARIA 133


>gi|116670816|ref|YP_831749.1| NusB antitermination factor [Arthrobacter sp. FB24]
 gi|166215661|sp|A0JX79|NUSB_ARTS2 RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|116610925|gb|ABK03649.1| NusB antitermination factor [Arthrobacter sp. FB24]
          Length = 136

 Score =  137 bits (347), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 32/138 (23%), Positives = 58/138 (42%), Gaps = 14/138 (10%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           RG AR  A+  L++ +    S  +++                      +   +   I+ G
Sbjct: 4   RGKARNRALDVLFEAEQRSLSAFDVLRSRR-------------EKTDQIVNPYTLEIVEG 50

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
           V+  +  ID  + +  ++ W+  R+  +   ILR G  EL+    VP  V +SE V +A 
Sbjct: 51  VVSHQAAIDEFLETY-SQGWTLERMPSVDRIILRIGTWELLYNDDVPDGVAVSEAVALAK 109

Query: 136 DFFYGDEPKFINAVLDKV 153
                + P FIN +L ++
Sbjct: 110 TLSTDESPSFINGLLGRL 127


>gi|296125572|ref|YP_003632824.1| NusB antitermination factor [Brachyspira murdochii DSM 12563]
 gi|296017388|gb|ADG70625.1| NusB antitermination factor [Brachyspira murdochii DSM 12563]
          Length = 154

 Score =  137 bits (346), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 44/159 (27%), Positives = 69/159 (43%), Gaps = 17/159 (10%)

Query: 3   IQDNKKDLKLSH--RRGIARLAAVQALYQIDII--GCSTTEIISEYETYRFCADTELDVE 58
            ++N KDL LS    R  AR+ AV +LY  +I     S   I+            + D +
Sbjct: 7   NKENIKDLDLSAYGARRQARIYAVMSLYSYEINERKISINNIL------------DFDYD 54

Query: 59  SVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIEC 118
                    + R ++ G +   + ID LI    +  W   R+  +  SI+R  +  LI  
Sbjct: 55  KKIPENIFAFTRNLVEGTIKNLERIDSLIEKY-SNNWDIKRIQYVDKSIIRMSIYSLIFL 113

Query: 119 HSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKE 157
             +P  V+I E V IA  F   D  KF+N +LD +  ++
Sbjct: 114 KDIPKSVVIDEAVEIAKIFSDKDSYKFVNGILDGIQEED 152


>gi|271964358|ref|YP_003338554.1| transcription antitermination factor NusB [Streptosporangium roseum
           DSM 43021]
 gi|270507533|gb|ACZ85811.1| transcription antitermination factor NusB [Streptosporangium roseum
           DSM 43021]
          Length = 136

 Score =  137 bits (346), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 37/147 (25%), Positives = 68/147 (46%), Gaps = 17/147 (11%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           RG AR  A+  L++ +        +++E          E             +   I+ G
Sbjct: 4   RGKARRRALDILFEAEARSQDPLSVLAERLERAEPPVNE-------------YTATIVEG 50

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
           V   +  ID LI++   E W+  R+  +  ++LR G  EL+    VP  V+ISE+V +A 
Sbjct: 51  VCRHRARIDELITTY-AEGWTLDRMPAVDRNLLRGGTYELLWMPDVPEGVVISEWVSLAS 109

Query: 136 DFFYGDEPKFINAVLDKVSRKEEIKRS 162
           +    + P+F+N +   ++R +++K S
Sbjct: 110 ELSTDESPQFVNGL---MARFKQLKPS 133


>gi|171463084|ref|YP_001797197.1| NusB antitermination factor [Polynucleobacter necessarius subsp.
           necessarius STIR1]
 gi|171192622|gb|ACB43583.1| NusB antitermination factor [Polynucleobacter necessarius subsp.
           necessarius STIR1]
          Length = 169

 Score =  137 bits (346), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 42/159 (26%), Positives = 67/159 (42%), Gaps = 13/159 (8%)

Query: 3   IQDNKKDLKLSHRR-----GIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDV 57
                KD K S +R       AR  A+Q +YQ      S     +           +L  
Sbjct: 10  NPPAGKDAKPSPKRSLTPRRRAREYALQGVYQ------SLVMRRAGSIPNGAAIAKQLSE 63

Query: 58  ESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIE 117
           +  +    L+ F+ I  GV+ R   ++ +I+  L      + L  +  + L  G  EL  
Sbjct: 64  DPAFRRCQLDLFQSIFDGVLARTDELEAIITPALDR--PINELSPVEHAALLIGAYELAA 121

Query: 118 CHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRK 156
             SVP +V I+E V +A  F   D  K++N VLD +++K
Sbjct: 122 DLSVPYKVAINEAVELAKTFGGTDGHKYVNGVLDLLAQK 160


>gi|307265164|ref|ZP_07546723.1| NusB antitermination factor [Thermoanaerobacter wiegelii Rt8.B1]
 gi|306919786|gb|EFN50001.1| NusB antitermination factor [Thermoanaerobacter wiegelii Rt8.B1]
          Length = 140

 Score =  137 bits (346), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 34/148 (22%), Positives = 63/148 (42%), Gaps = 14/148 (9%)

Query: 15  RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74
            R  AR   V+ LYQ D+     ++I   +       + +            E+    + 
Sbjct: 2   NRTEAREWVVKMLYQYDVSRLPISKIFENFYKENDPGEQK------------EYIENTVI 49

Query: 75  GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134
           G ++  + ID  I    ++ W+ +R+  I  +ILR  + E+    ++PV + I+E V IA
Sbjct: 50  GAIEHLEEIDKEIERY-SQNWALNRMPKIDLAILRCSIYEMQYG-NIPVNISINEAVEIA 107

Query: 135 HDFFYGDEPKFINAVLDKVSRKEEIKRS 162
             +   D   FIN +L    R + ++  
Sbjct: 108 KKYSTEDSHVFINGLLGAFVRDKGLEEG 135


>gi|269926747|ref|YP_003323370.1| NusB antitermination factor [Thermobaculum terrenum ATCC BAA-798]
 gi|269790407|gb|ACZ42548.1| NusB antitermination factor [Thermobaculum terrenum ATCC BAA-798]
          Length = 153

 Score =  137 bits (346), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 36/150 (24%), Positives = 62/150 (41%), Gaps = 12/150 (8%)

Query: 14  HRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVII 73
            +R  AR  A+Q LY+ +       EI+                E         +   + 
Sbjct: 10  QQRHQARALAMQVLYEAETTRKQPYEILQRRRN-----------EENIPEQVHAYASDLA 58

Query: 74  HGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCI 133
            GV   ++  D LI+   T  W+  ++  +  +ILR  V E++  + VP+   I+E V +
Sbjct: 59  IGVWQNRKEYDSLITRF-TPTWTIDQMAKVDRNILRIAVHEMLRRNDVPIAAAINEAVEL 117

Query: 134 AHDFFYGDEPKFINAVLDKVSRKEEIKRSG 163
           A ++     PKF+N VL  ++   E    G
Sbjct: 118 AKEYGAEASPKFVNGVLGAIADAIESSSGG 147


>gi|71276430|ref|ZP_00652706.1| Antitermination protein NusB [Xylella fastidiosa Dixon]
 gi|71900509|ref|ZP_00682639.1| Antitermination protein NusB [Xylella fastidiosa Ann-1]
 gi|170730978|ref|YP_001776411.1| transcription antitermination protein NusB [Xylella fastidiosa M12]
 gi|238687943|sp|B0U4K2|NUSB_XYLFM RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|71162746|gb|EAO12472.1| Antitermination protein NusB [Xylella fastidiosa Dixon]
 gi|71729749|gb|EAO31850.1| Antitermination protein NusB [Xylella fastidiosa Ann-1]
 gi|167965771|gb|ACA12781.1| transcription termination factor [Xylella fastidiosa M12]
          Length = 157

 Score =  137 bits (346), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 34/135 (25%), Positives = 58/135 (42%), Gaps = 16/135 (11%)

Query: 28  YQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLI 87
           Y   I G    ++I+ +             E  Y   DL +F  ++ GV+     +D  +
Sbjct: 34  YAWQISGGVAKQVIAHFAH-----------EQAYEVADLVYFEDLVEGVLTHCAELDEKL 82

Query: 88  SSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFIN 147
           +  L    +   +D I  ++LR G  EL+    VP  V+I+E +  A  F       ++N
Sbjct: 83  TPYLDR--TIEEVDAIERAVLRLGAYELLYRQDVPYRVVINEAIMTAKRFGSKYGHTYVN 140

Query: 148 AVLDKVS---RKEEI 159
            VLD+ +   RK E+
Sbjct: 141 GVLDRAALALRKVEV 155


>gi|306828961|ref|ZP_07462153.1| transcription antitermination factor NusB [Streptococcus mitis ATCC
           6249]
 gi|304429139|gb|EFM32227.1| transcription antitermination factor NusB [Streptococcus mitis ATCC
           6249]
          Length = 140

 Score =  137 bits (346), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 36/143 (25%), Positives = 62/143 (43%), Gaps = 11/143 (7%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           R   R  A QAL  ++  G             RF    + +   V L     +   ++ G
Sbjct: 9   RRQLRKCAFQALMSLEF-GTDVET------ACRFAYTHDREDTDVQLPA---FLTELVSG 58

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
           V  +K+ +D  I+  L   W+  RL ++  ++LR GV E+      P  V ++E + +A 
Sbjct: 59  VQAKKEELDKQITQHLKAGWTIERLTLVERNLLRLGVFEITSF-DTPQLVAVNEAIELAK 117

Query: 136 DFFYGDEPKFINAVLDKVSRKEE 158
           DF      +FIN +L +   +E+
Sbjct: 118 DFSDQKSARFINGLLGQFVTEEQ 140


>gi|284048210|ref|YP_003398549.1| NusB antitermination factor [Acidaminococcus fermentans DSM 20731]
 gi|283952431|gb|ADB47234.1| NusB antitermination factor [Acidaminococcus fermentans DSM 20731]
          Length = 139

 Score =  137 bits (346), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 38/142 (26%), Positives = 69/142 (48%), Gaps = 9/142 (6%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           R  AR  A+++L+ ++     + E     ET R  A+ E   ++     DL +   ++ G
Sbjct: 3   RRDARTIAMRSLFALEFSPEQSPE-----ETVRTMAEEEDIQDTR--KKDLAYALDLVKG 55

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHS-VPVEVIISEYVCIA 134
           V + ++ +D  ++  L  KW+  R++ I  ++LR    E+      VP  V I+E V +A
Sbjct: 56  VRENQEALDGELNG-LDAKWTLKRMNGIDRNLLRIAGYEMFCSPEPVPPAVAINEAVELA 114

Query: 135 HDFFYGDEPKFINAVLDKVSRK 156
             +   D P FIN +L  + +K
Sbjct: 115 KVYGGDDSPAFINGLLGSLVKK 136


>gi|184155740|ref|YP_001844080.1| transcription antitermination protein NusB [Lactobacillus fermentum
           IFO 3956]
 gi|238692985|sp|B2GD68|NUSB_LACF3 RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|183227084|dbj|BAG27600.1| transcription termination factor [Lactobacillus fermentum IFO 3956]
          Length = 139

 Score =  137 bits (346), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 34/142 (23%), Positives = 53/142 (37%), Gaps = 11/142 (7%)

Query: 12  LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71
           ++ +R   R  A Q L+ +     S  E+  E            +           +   
Sbjct: 1   MTFKRRRIREVAFQTLFAM----VSDPEVDREQLYKELLPLAPQEEVP-------AYLEE 49

Query: 72  IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
           ++ GV + +   D  I   L   WS SR++     ILR  + E+     VPV V I E +
Sbjct: 50  LVTGVSEHQAEFDQEIEGSLAAGWSLSRVEKPNLIILRLALYEMKYVDDVPVAVAIDEAL 109

Query: 132 CIAHDFFYGDEPKFINAVLDKV 153
            +   F      KFIN VL  +
Sbjct: 110 EMTKKFSDDKSRKFINGVLGHI 131


>gi|289706203|ref|ZP_06502566.1| transcription antitermination factor NusB [Micrococcus luteus SK58]
 gi|289557042|gb|EFD50370.1| transcription antitermination factor NusB [Micrococcus luteus SK58]
          Length = 150

 Score =  137 bits (346), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 38/143 (26%), Positives = 69/143 (48%), Gaps = 14/143 (9%)

Query: 11  KLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFR 70
           + +  R  +R  AV+ L++ +  G +  E I    T R   D +++           + +
Sbjct: 13  RGTTARSRSRQRAVEILFEAEQRGSTALEGIR---TRRESTDLQVN----------AYTQ 59

Query: 71  VIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEY 130
            ++ GV+  ++ +D  +SS  +  WS  R+  +  +ILR G  EL+    VP  V ISE 
Sbjct: 60  RLVEGVIADQERLDEALSSY-SRGWSLDRMPAVDLAILRVGAWELLFQDDVPDAVAISEA 118

Query: 131 VCIAHDFFYGDEPKFINAVLDKV 153
           V +A      D P+F+N +L ++
Sbjct: 119 VALAAQLSTDDSPEFVNGLLGRL 141


>gi|188586319|ref|YP_001917864.1| NusB antitermination factor [Natranaerobius thermophilus
           JW/NM-WN-LF]
 gi|229620365|sp|B2A534|NUSB_NATTJ RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|179351006|gb|ACB85276.1| NusB antitermination factor [Natranaerobius thermophilus
           JW/NM-WN-LF]
          Length = 139

 Score =  137 bits (346), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 34/146 (23%), Positives = 62/146 (42%), Gaps = 9/146 (6%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           R  AR A+++ ++Q+        E+ +E        D     +    + + ++   ++  
Sbjct: 3   RRTAREASMKLVFQMAFNDDHVDEVGAE--------DILAQAKEELNYNNYQYIETVVSR 54

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
                Q ID  I    +E W   RL  +  SILR  + E++    +P  V I+E V +A 
Sbjct: 55  TESNLQKIDEYIEKF-SENWKIDRLSKVDLSILRLAISEILFFDDIPTRVSINEAVELAK 113

Query: 136 DFFYGDEPKFINAVLDKVSRKEEIKR 161
            F       +IN +LD+V+ +    R
Sbjct: 114 KFSTDKASGYINGILDQVANQLNKAR 139


>gi|157964229|ref|YP_001499053.1| transcription antitermination protein NusB [Rickettsia massiliae
           MTU5]
 gi|166918810|sp|A8F0S0|NUSB_RICM5 RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|157844005|gb|ABV84506.1| N utilization substance protein B [Rickettsia massiliae MTU5]
          Length = 156

 Score =  137 bits (346), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 41/145 (28%), Positives = 84/145 (57%), Gaps = 2/145 (1%)

Query: 14  HRRGIARLAAVQALYQ-IDIIGCSTTEIISEYETYRFCADTELD-VESVYLHVDLEWFRV 71
           +++ IAR+AAVQA+YQ I        +I+    ++    ++  D  E++ + + +  F++
Sbjct: 7   NKKSIARIAAVQAIYQNILQNNDDMDDIMQNVLSFYQNNNSITDLPENLKISLSISHFKM 66

Query: 72  IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
           ++  V +    +D +I + LT     + + ++L ++LR  + EL+ C + P +V+I+EY 
Sbjct: 67  LVKSVFENINKLDEIIDNHLTNDKDPAHMPILLRALLRVSICELLFCPTTPAKVVINEYT 126

Query: 132 CIAHDFFYGDEPKFINAVLDKVSRK 156
            IA+D     E  F+N+VLDK++++
Sbjct: 127 DIANDMLNEHEIGFVNSVLDKIAKE 151


>gi|228477148|ref|ZP_04061786.1| transcription antitermination factor NusB [Streptococcus salivarius
           SK126]
 gi|312863702|ref|ZP_07723940.1| transcription antitermination factor NusB [Streptococcus
           vestibularis F0396]
 gi|322516050|ref|ZP_08068987.1| transcription antitermination factor NusB [Streptococcus
           vestibularis ATCC 49124]
 gi|228251167|gb|EEK10338.1| transcription antitermination factor NusB [Streptococcus salivarius
           SK126]
 gi|311101238|gb|EFQ59443.1| transcription antitermination factor NusB [Streptococcus
           vestibularis F0396]
 gi|322125465|gb|EFX96811.1| transcription antitermination factor NusB [Streptococcus
           vestibularis ATCC 49124]
          Length = 144

 Score =  137 bits (346), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 39/143 (27%), Positives = 62/143 (43%), Gaps = 9/143 (6%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLE-WFRVIIH 74
           R   R  A Q L+ ++  G +  +       + +  D  +D E     VD+  +   ++ 
Sbjct: 9   RRDLRERAFQTLFALEFGGEALEQA-----HFAYTYDKPIDEE---TEVDVPAFLLSLVT 60

Query: 75  GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134
           GV +    +D  I   L E WS SRL +   ++LR G+ E+      P  V I+E + IA
Sbjct: 61  GVREELAQLDSQIEEKLKEGWSLSRLIVTDRTLLRLGLYEITSFEETPGRVAINEIIEIA 120

Query: 135 HDFFYGDEPKFINAVLDKVSRKE 157
             +      KFIN VL +    E
Sbjct: 121 KKYSDETSAKFINGVLSQFVTDE 143


>gi|28199615|ref|NP_779929.1| transcription antitermination protein NusB [Xylella fastidiosa
           Temecula1]
 gi|182682359|ref|YP_001830519.1| transcription antitermination protein NusB [Xylella fastidiosa M23]
 gi|32129808|sp|Q87AS8|NUSB_XYLFT RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|238691093|sp|B2I8Q4|NUSB_XYLF2 RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|28057730|gb|AAO29578.1| transcription termination factor [Xylella fastidiosa Temecula1]
 gi|182632469|gb|ACB93245.1| NusB antitermination factor [Xylella fastidiosa M23]
 gi|307578641|gb|ADN62610.1| transcription antitermination protein NusB [Xylella fastidiosa
           subsp. fastidiosa GB514]
          Length = 157

 Score =  137 bits (346), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 34/135 (25%), Positives = 58/135 (42%), Gaps = 16/135 (11%)

Query: 28  YQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLI 87
           Y   I G    ++I+ +             E  Y   DL +F  ++ GV+     +D  +
Sbjct: 34  YAWQISGGVAKQVIAHFAH-----------EQAYEVADLVYFEDLVEGVLTHCAELDEKL 82

Query: 88  SSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFIN 147
           +  L    +   +D I  ++LR G  EL+    VP  V+I+E +  A  F       ++N
Sbjct: 83  TPYLDR--TIEEVDAIERAVLRLGAYELLYRQDVPYRVVINEAIMTAKRFGSKYGHTYVN 140

Query: 148 AVLDKVS---RKEEI 159
            VLD+ +   RK E+
Sbjct: 141 GVLDRAALALRKVEV 155


>gi|306807668|ref|ZP_07444336.1| putative transcription antitermination factor NusB [Mycobacterium
           tuberculosis SUMu007]
 gi|308345910|gb|EFP34761.1| putative transcription antitermination factor NusB [Mycobacterium
           tuberculosis SUMu007]
          Length = 232

 Score =  137 bits (345), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 37/128 (28%), Positives = 63/128 (49%), Gaps = 9/128 (7%)

Query: 26  ALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDL 85
            L++ ++ G S  E++    T    A+ + D+  ++      +   +  GV +   HID 
Sbjct: 3   LLFEAEVRGISAAEVVD---TRAALAEAKPDIARLH-----PYTAAVARGVSEHAAHIDD 54

Query: 86  LISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKF 145
           LI++ L   W+  RL  +  +ILR  V EL+    VP  V++ E V +A +    D P F
Sbjct: 55  LITAHL-RGWTLDRLPAVDRAILRVSVWELLHAADVPEPVVVDEAVQLAKELSTDDSPGF 113

Query: 146 INAVLDKV 153
           +N VL +V
Sbjct: 114 VNGVLGQV 121


>gi|227544393|ref|ZP_03974442.1| transcription antitermination protein NusB [Lactobacillus reuteri
           CF48-3A]
 gi|227185656|gb|EEI65727.1| transcription antitermination protein NusB [Lactobacillus reuteri
           CF48-3A]
          Length = 138

 Score =  137 bits (345), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 34/150 (22%), Positives = 60/150 (40%), Gaps = 12/150 (8%)

Query: 12  LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71
           +S  R + R  A Q L+ +        +I + YE      + ++            +   
Sbjct: 1   MSLNRHMIREEAFQVLFALQ--SDPEADIQTVYEAIPHHDEKQIP----------PYLLT 48

Query: 72  IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
           +++GV + +  +D  I+  L   W+ +RL      ILR  + E+    +VP  V I+E +
Sbjct: 49  LVNGVREHQDQLDEQINDLLASGWTINRLAKPDLVILRLALFEIQYAENVPTVVAINEAL 108

Query: 132 CIAHDFFYGDEPKFINAVLDKVSRKEEIKR 161
            +   F      KFIN  L K  R+     
Sbjct: 109 ELTKTFSSDKSRKFINGALGKFERQVNTNN 138


>gi|313887990|ref|ZP_07821668.1| transcription antitermination factor NusB [Peptoniphilus harei
           ACS-146-V-Sch2b]
 gi|312845945|gb|EFR33328.1| transcription antitermination factor NusB [Peptoniphilus harei
           ACS-146-V-Sch2b]
          Length = 132

 Score =  137 bits (345), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 38/140 (27%), Positives = 66/140 (47%), Gaps = 12/140 (8%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           R  AR+ A+QAL+ +D+    +T+ +  +         E+D           + +  +  
Sbjct: 3   RKRARIGAMQALFAMDVNDDFSTDKLDLFMENHEFQGDEVD-----------YIKRTVPD 51

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
           ++D+   +D  I   L + W+ +RL  +   ILR  V E +    +P EV I+E V IA 
Sbjct: 52  ILDKLDLVDETIEKNL-KGWTMARLAKVDRQILRIAVYEFLYKDDIPEEVSINEAVEIAR 110

Query: 136 DFFYGDEPKFINAVLDKVSR 155
            +   + PKFIN +L  + R
Sbjct: 111 LYSSDEAPKFINGILGTIYR 130


>gi|283782240|ref|YP_003372995.1| NusB antitermination factor [Pirellula staleyi DSM 6068]
 gi|283440693|gb|ADB19135.1| NusB antitermination factor [Pirellula staleyi DSM 6068]
          Length = 136

 Score =  137 bits (345), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 37/145 (25%), Positives = 69/145 (47%), Gaps = 12/145 (8%)

Query: 14  HRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVII 73
            RR  AR   +Q LY+ D+    +  +   +   R   D EL          +++ R ++
Sbjct: 2   ARRSRAREVVLQILYEDDLNPDRSIAVSDVFLRRRLGDDVEL----------VDFARDLL 51

Query: 74  HGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCI 133
            GV  R++ +D+L+     + W+  R+ +   ++LR G  E++     P  V I+E V +
Sbjct: 52  RGVRGRRKELDVLLQQK-ADHWTLDRMAVTDRNVLRLGAYEILHTQ-TPQRVAINEAVEL 109

Query: 134 AHDFFYGDEPKFINAVLDKVSRKEE 158
           A  F     P+F+N +LD+  +K+ 
Sbjct: 110 AKRFGARQSPQFVNGILDRFLQKKR 134


>gi|328881138|emb|CCA54377.1| Transcription termination protein NusB [Streptomyces venezuelae
           ATCC 10712]
          Length = 145

 Score =  137 bits (345), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 36/146 (24%), Positives = 64/146 (43%), Gaps = 12/146 (8%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           R  AR  A Q L++ D  G S  +++++        D +  V         ++   ++ G
Sbjct: 4   RSKARKRAFQILFEADQRGASVQQVLADQVRLARSDDRQPPVS--------DFTMQLVEG 55

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
                  ID LI++     W   R+ +   +I+R G  E+I     P  V I E V +A 
Sbjct: 56  YAAHVARIDELIATYAV-DWDLDRMPVADRNIVRLGAYEVIWEDGTPDAVAIDEAVQLAK 114

Query: 136 DFFYGDEPKFINAVLDKVSRKEEIKR 161
           +F   + P F+N +L   +R +++K 
Sbjct: 115 EFSTDESPTFVNGLL---ARFKDLKP 137


>gi|307299170|ref|ZP_07578971.1| NusB antitermination factor [Thermotogales bacterium mesG1.Ag.4.2]
 gi|306914966|gb|EFN45352.1| NusB antitermination factor [Thermotogales bacterium mesG1.Ag.4.2]
          Length = 148

 Score =  137 bits (345), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 40/146 (27%), Positives = 68/146 (46%), Gaps = 12/146 (8%)

Query: 12  LSHRRGIARLAAVQALYQIDII-GCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFR 70
            ++ R   R     A+YQ D      ++    E E   F  + E+ + +       ++F 
Sbjct: 5   PNNSRRKMREIVFSAIYQFDFNEDMESSSDYLEQELSFFSMEMEMKLRT------RKYFD 58

Query: 71  VIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEY 130
            I+      +  ID +I   LT  W+F RL     ++LR G  E+I    +P+EV ++E 
Sbjct: 59  TILK----NRNEIDEIIRKHLT-NWTFERLASTDKNVLRLGAYEIIYEPDIPIEVTLNES 113

Query: 131 VCIAHDFFYGDEPKFINAVLDKVSRK 156
           + IA  +      KF+N VLDK++R+
Sbjct: 114 IDIAKKYGSEQGGKFVNGVLDKIARE 139


>gi|303255410|ref|ZP_07341476.1| transcription antitermination protein NusB [Streptococcus
           pneumoniae BS455]
 gi|303259505|ref|ZP_07345482.1| transcription antitermination protein NusB [Streptococcus
           pneumoniae SP-BS293]
 gi|303262368|ref|ZP_07348311.1| transcription antitermination protein NusB [Streptococcus
           pneumoniae SP14-BS292]
 gi|303264786|ref|ZP_07350703.1| transcription antitermination protein NusB [Streptococcus
           pneumoniae BS397]
 gi|303266625|ref|ZP_07352510.1| transcription antitermination protein NusB [Streptococcus
           pneumoniae BS457]
 gi|303268858|ref|ZP_07354645.1| transcription antitermination protein NusB [Streptococcus
           pneumoniae BS458]
 gi|301801342|emb|CBW34025.1| N utilization substance protein B homolog (NusB protein)
           [Streptococcus pneumoniae INV200]
 gi|302597655|gb|EFL64735.1| transcription antitermination protein NusB [Streptococcus
           pneumoniae BS455]
 gi|302636467|gb|EFL66959.1| transcription antitermination protein NusB [Streptococcus
           pneumoniae SP14-BS292]
 gi|302639439|gb|EFL69897.1| transcription antitermination protein NusB [Streptococcus
           pneumoniae SP-BS293]
 gi|302641639|gb|EFL71999.1| transcription antitermination protein NusB [Streptococcus
           pneumoniae BS458]
 gi|302643869|gb|EFL74131.1| transcription antitermination protein NusB [Streptococcus
           pneumoniae BS457]
 gi|302645653|gb|EFL75883.1| transcription antitermination protein NusB [Streptococcus
           pneumoniae BS397]
          Length = 140

 Score =  137 bits (345), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 37/143 (25%), Positives = 62/143 (43%), Gaps = 11/143 (7%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           R   R  A QAL  ++  G             RF    + +   V L     +   ++ G
Sbjct: 9   RRQLRKCAFQALMSLEF-GTDVET------ACRFAYTHDREYTDVQLPA---FLIDLVSG 58

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
           V  +K+ +D  I+  L   W+  RL ++  ++LR GV E+      P  V I+E + +A 
Sbjct: 59  VQAKKEELDKQITQHLKAGWTIERLTLVERNLLRLGVFEITSF-DTPQLVAINEAIELAK 117

Query: 136 DFFYGDEPKFINAVLDKVSRKEE 158
           DF      +FIN +L +   +E+
Sbjct: 118 DFSDQKSARFINGLLSQFVTEEQ 140


>gi|319946361|ref|ZP_08020599.1| N utilization substance protein B [Streptococcus australis ATCC
           700641]
 gi|319747514|gb|EFV99769.1| N utilization substance protein B [Streptococcus australis ATCC
           700641]
          Length = 142

 Score =  137 bits (345), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 37/143 (25%), Positives = 61/143 (42%), Gaps = 9/143 (6%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           R   R  A QAL  ++  G      + E   + F  D E   + V +     +   ++ G
Sbjct: 9   RRDLRERAFQALMSLEYEGD-----VVEACRFAFTHDKEETDQEVEIPA---FLLNLVSG 60

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
           V   K  +D  I+  L   W+  RL ++  +ILR GV E+      P  V ++E + +A 
Sbjct: 61  VRQSKDELDKQIAQHLKTGWTVERLTLVEKNILRLGVFEITSF-DTPQLVAVNEAIELAK 119

Query: 136 DFFYGDEPKFINAVLDKVSRKEE 158
            F      +F+N VL +   + E
Sbjct: 120 TFSDEKSARFVNGVLSQFVTEAE 142


>gi|145594393|ref|YP_001158690.1| transcription antitermination factor NusB [Salinispora tropica
           CNB-440]
 gi|189035903|sp|A4X612|NUSB_SALTO RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|145303730|gb|ABP54312.1| transcription antitermination factor NusB [Salinispora tropica
           CNB-440]
          Length = 136

 Score =  137 bits (345), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 36/139 (25%), Positives = 62/139 (44%), Gaps = 11/139 (7%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           R  AR  A+  L++ D+ G    E+++ Y         E           L +   ++ G
Sbjct: 4   RRKARKRALDVLFEADLRGRPPVEVLAGYVERIEKPRPEH----------LGYAVGLVEG 53

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
           V  R   +D LI+S   E W+  R+  +  ++ R  V EL+    +   V ISE V +A 
Sbjct: 54  VAARLDRVDELIASY-AEGWTLDRMPTVDRNLARIAVYELLYVDEIDDAVAISEAVELAR 112

Query: 136 DFFYGDEPKFINAVLDKVS 154
                D P+F+N +L +++
Sbjct: 113 QMSTDDSPRFLNGLLGRIA 131


>gi|320104116|ref|YP_004179707.1| NusB antitermination factor [Isosphaera pallida ATCC 43644]
 gi|319751398|gb|ADV63158.1| NusB antitermination factor [Isosphaera pallida ATCC 43644]
          Length = 177

 Score =  137 bits (345), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 37/134 (27%), Positives = 59/134 (44%), Gaps = 12/134 (8%)

Query: 20  RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79
           R   +Q LY +D     + E I ++  +R    +  D             R +I GV   
Sbjct: 10  REIVLQVLYMLDHNTGLSQEEIEQFLAWRLREPSWRDE-----------ARGLIEGVRRH 58

Query: 80  KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139
           ++ ID +IS  L   W   R+  I  ++LR G  E++    VPV V I+E V +   F  
Sbjct: 59  RETIDQVISD-LARNWRLDRMAAIDRNVLRLGTYEVLYRLDVPVAVAITEAVELVKRFGS 117

Query: 140 GDEPKFINAVLDKV 153
               +F+N +L +V
Sbjct: 118 AQSSRFVNGILGRV 131


>gi|170782398|ref|YP_001710731.1| transcription termination protein [Clavibacter michiganensis subsp.
           sepedonicus]
 gi|189035882|sp|B0REX0|NUSB_CLAMS RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|169156967|emb|CAQ02136.1| transcription termination protein [Clavibacter michiganensis subsp.
           sepedonicus]
          Length = 137

 Score =  137 bits (345), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 35/139 (25%), Positives = 61/139 (43%), Gaps = 9/139 (6%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           R  AR  A+  LY  DI G S    ++         + +             + R I  G
Sbjct: 4   RTKARKRALDVLYVADIRGESIPATLA--------VEQQRAAAEPDRQASWAYAREIAEG 55

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
            ++ +  ID LI +  +  W+ +R+  +  +ILR G+ E++    VP  V ISE V +A 
Sbjct: 56  FVEHQDEIDELIETY-SVNWTLARMPAVDRAILRIGIWEILFNADVPDGVAISESVDLAS 114

Query: 136 DFFYGDEPKFINAVLDKVS 154
                +   F+N +L +++
Sbjct: 115 SLSTDESASFVNGMLARIA 133


>gi|241758553|ref|ZP_04756670.1| transcription antitermination factor NusB [Neisseria flavescens
           SK114]
 gi|241321296|gb|EER57456.1| transcription antitermination factor NusB [Neisseria flavescens
           SK114]
          Length = 142

 Score =  137 bits (345), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 41/155 (26%), Positives = 60/155 (38%), Gaps = 16/155 (10%)

Query: 12  LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71
           +   R  AR  AVQA+YQ  I   +  EI                  S   ++D E F  
Sbjct: 1   MKSPRRRARELAVQAIYQAGINKTAAPEIAKNIHEL-----------SQTSNMDEELFNK 49

Query: 72  IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
           +  G     +     IS  L        L  I  ++L     EL      P  VII+E +
Sbjct: 50  LFFGTQTHAEEYMEKISPLLDRDEK--DLSPIERAVLLVACHELSTMPETPYPVIINEAI 107

Query: 132 CIAHDFFYGDEPKFINAVLDKVS---RKEEIKRSG 163
            +   F   D  KF+N +LD+++   R +E +R G
Sbjct: 108 EVTKTFGGTDGHKFVNGILDQLASRIRPDEPRRKG 142


>gi|15837557|ref|NP_298245.1| transcription antitermination protein NusB [Xylella fastidiosa
           9a5c]
 gi|22095972|sp|Q9PES3|NUSB_XYLFA RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|9105883|gb|AAF83765.1|AE003934_7 transcription termination factor [Xylella fastidiosa 9a5c]
          Length = 157

 Score =  136 bits (344), Expect = 8e-31,   Method: Composition-based stats.
 Identities = 34/135 (25%), Positives = 58/135 (42%), Gaps = 16/135 (11%)

Query: 28  YQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLI 87
           Y   I G    ++I+ +             E  Y   DL +F  ++ GV+     +D  +
Sbjct: 34  YAWQISGGVAKQVIAHFAH-----------EQAYEVADLAYFEDLVEGVLTHCAELDEKL 82

Query: 88  SSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFIN 147
           +  L    +   +D I  ++LR G  EL+    VP  V+I+E +  A  F       ++N
Sbjct: 83  TPYLDR--TIEEVDAIERAVLRLGAYELLYRQDVPYRVVINEAIMTAKRFGSKYGHTYVN 140

Query: 148 AVLDKVS---RKEEI 159
            VLD+ +   RK E+
Sbjct: 141 GVLDRAALALRKVEV 155


>gi|254518730|ref|ZP_05130786.1| NusB antitermination factor [Clostridium sp. 7_2_43FAA]
 gi|226912479|gb|EEH97680.1| NusB antitermination factor [Clostridium sp. 7_2_43FAA]
          Length = 134

 Score =  136 bits (344), Expect = 8e-31,   Method: Composition-based stats.
 Identities = 36/141 (25%), Positives = 61/141 (43%), Gaps = 10/141 (7%)

Query: 15  RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74
            R  +R  A++ L+ + +   +  E I  +           D E     +DLE+ + I+ 
Sbjct: 2   NRKRSREIAMELLFGMTLSKNTLEETIETFIE---------DYEMNLKTIDLEYIKGILA 52

Query: 75  GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134
            V +    ID  I   LT  W   R+  +  SILR  + E++    VP +V I+E + + 
Sbjct: 53  KVEENITVIDQKIEEALT-NWKIDRVSKVNISILRLAIAEMLYVEDVPEKVAINEAIELT 111

Query: 135 HDFFYGDEPKFINAVLDKVSR 155
             +       F+N VLDK  +
Sbjct: 112 KKYSDEKSVSFVNGVLDKAFK 132


>gi|148270186|ref|YP_001244646.1| transcription antitermination protein NusB [Thermotoga petrophila
           RKU-1]
 gi|166215727|sp|A5ILJ7|NUSB_THEP1 RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|147735730|gb|ABQ47070.1| NusB antitermination factor [Thermotoga petrophila RKU-1]
          Length = 142

 Score =  136 bits (344), Expect = 8e-31,   Method: Composition-based stats.
 Identities = 44/154 (28%), Positives = 70/154 (45%), Gaps = 16/154 (10%)

Query: 10  LKLSHRRGIARLAAVQALYQIDII-GCSTTEIISEYETYRFCADTELDVESVYLHVDLEW 68
           +K   RR   RLA  +AL+Q +        +I+ E              +  Y     E 
Sbjct: 1   MKTPRRRM--RLAVFKALFQHEFRRDEDLEQILEEIL------------DETYDKKAKED 46

Query: 69  FRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIIS 128
            R  I G+ +    ID LIS  L EKWS +RL  +  ++LR    EL+    +P+E  I 
Sbjct: 47  ARRYIRGIKENLPMIDNLISRYL-EKWSLNRLSAVDRNVLRLATYELLFEKDIPIEATID 105

Query: 129 EYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRS 162
           E + IA  +   +  KF+N +LD+++++   K  
Sbjct: 106 EAIEIAKRYGTENSGKFVNGILDRIAKEHAPKEK 139


>gi|159037466|ref|YP_001536719.1| NusB antitermination factor [Salinispora arenicola CNS-205]
 gi|189035900|sp|A8LY11|NUSB_SALAI RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|157916301|gb|ABV97728.1| NusB antitermination factor [Salinispora arenicola CNS-205]
          Length = 136

 Score =  136 bits (344), Expect = 8e-31,   Method: Composition-based stats.
 Identities = 33/139 (23%), Positives = 60/139 (43%), Gaps = 11/139 (7%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           R  AR  A+  L++ D+      E+++ Y         E           L +   ++ G
Sbjct: 4   RRKARKRALDVLFEADLRDRPPVEVLAGYVERLEKPRPEH----------LGYAVGLVEG 53

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
           +      +D LI+S   E W+  R+  +  ++ R  V EL+    +   V ISE V +A 
Sbjct: 54  IAVHLDRLDELIASY-AEGWTLDRMPAVDRNLARIAVYELLYVDEIDDAVAISEAVELAR 112

Query: 136 DFFYGDEPKFINAVLDKVS 154
                D P+F+N +L +++
Sbjct: 113 QMSTDDSPRFLNGILGRIA 131


>gi|256847385|ref|ZP_05552831.1| transcription antitermination factor NusB [Lactobacillus
           coleohominis 101-4-CHN]
 gi|256716049|gb|EEU31024.1| transcription antitermination factor NusB [Lactobacillus
           coleohominis 101-4-CHN]
          Length = 137

 Score =  136 bits (344), Expect = 8e-31,   Method: Composition-based stats.
 Identities = 35/145 (24%), Positives = 62/145 (42%), Gaps = 11/145 (7%)

Query: 12  LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71
           +S  R   R+AA Q L+   +I   + +  + Y         E            ++   
Sbjct: 1   MSFSRHTIRIAAFQTLFA--LINNPSADKGALYAEVLKLGSKETAP---------QYLDE 49

Query: 72  IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
           ++ GV + +  +D +IS+ LT  W+  RL      ILR  + EL     +P  ++I+E +
Sbjct: 50  LVSGVQEHQADLDAIISNYLTNNWTIDRLARPNLVILRIALYELQYEKELPAPIVINEAL 109

Query: 132 CIAHDFFYGDEPKFINAVLDKVSRK 156
            +A  F      +FIN VL    ++
Sbjct: 110 ELAKSFSDDKSRRFINGVLGHYEKE 134


>gi|238650352|ref|YP_002916204.1| transcription antitermination protein NusB [Rickettsia peacockii
           str. Rustic]
 gi|259514892|sp|C4K0Q5|NUSB_RICPU RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|238624450|gb|ACR47156.1| transcription antitermination protein NusB [Rickettsia peacockii
           str. Rustic]
          Length = 156

 Score =  136 bits (344), Expect = 8e-31,   Method: Composition-based stats.
 Identities = 41/145 (28%), Positives = 84/145 (57%), Gaps = 2/145 (1%)

Query: 14  HRRGIARLAAVQALYQ-IDIIGCSTTEIISEYETYRFCADTELD-VESVYLHVDLEWFRV 71
           +++ IAR+AAVQA+YQ I        +I+    ++    ++  D  E++ + + +  F++
Sbjct: 7   NKKSIARIAAVQAIYQNILQNNDDMDDIMQNVLSFYQNNNSITDLPENLKISLSISHFKM 66

Query: 72  IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
           ++  V +    +D +I + LT     + + ++L ++LR  + EL+ C + P +V+I+EY 
Sbjct: 67  LVKSVFENIHKLDEIIDNHLTNDKDPAHMPILLRALLRVSICELLFCPTTPAKVVINEYT 126

Query: 132 CIAHDFFYGDEPKFINAVLDKVSRK 156
            IA+D     E  F+N+VLDK++++
Sbjct: 127 DIANDMLNEHEIGFVNSVLDKIAKE 151


>gi|293364851|ref|ZP_06611568.1| N utilization substance protein B [Streptococcus oralis ATCC 35037]
 gi|307703100|ref|ZP_07640047.1| transcription antitermination factor NusB [Streptococcus oralis
           ATCC 35037]
 gi|315612604|ref|ZP_07887517.1| transcription antitermination factor NusB [Streptococcus sanguinis
           ATCC 49296]
 gi|322374852|ref|ZP_08049366.1| transcription antitermination factor NusB [Streptococcus sp. C300]
 gi|331266955|ref|YP_004326585.1| transcription antitermination protein NusB [Streptococcus oralis
           Uo5]
 gi|291316301|gb|EFE56737.1| N utilization substance protein B [Streptococcus oralis ATCC 35037]
 gi|307623493|gb|EFO02483.1| transcription antitermination factor NusB [Streptococcus oralis
           ATCC 35037]
 gi|315315585|gb|EFU63624.1| transcription antitermination factor NusB [Streptococcus sanguinis
           ATCC 49296]
 gi|321280352|gb|EFX57391.1| transcription antitermination factor NusB [Streptococcus sp. C300]
 gi|326683627|emb|CBZ01245.1| transcription antitermination protein NusB [Streptococcus oralis
           Uo5]
          Length = 140

 Score =  136 bits (344), Expect = 8e-31,   Method: Composition-based stats.
 Identities = 36/143 (25%), Positives = 62/143 (43%), Gaps = 11/143 (7%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           R   R  A QAL  ++  G             RF    + +   V L     +   ++ G
Sbjct: 9   RRQLRKCAFQALMSLEF-GTDVET------ACRFAYTHDREDTDVQLPA---FLTELVSG 58

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
           V  +K+ +D  I+  L   W+  RL ++  ++LR GV E+      P  V ++E + +A 
Sbjct: 59  VQAKKEELDKQITQHLKAGWTIERLTLVERNLLRLGVFEITSF-DTPQLVAVNEAIELAK 117

Query: 136 DFFYGDEPKFINAVLDKVSRKEE 158
           DF      +FIN +L +   +E+
Sbjct: 118 DFSDQKSARFINGLLSQFVTEEQ 140


>gi|223043157|ref|ZP_03613204.1| transcription antitermination factor NusB [Staphylococcus capitis
           SK14]
 gi|314933698|ref|ZP_07841063.1| transcription antitermination factor NusB [Staphylococcus caprae
           C87]
 gi|222443368|gb|EEE49466.1| transcription antitermination factor NusB [Staphylococcus capitis
           SK14]
 gi|313653848|gb|EFS17605.1| transcription antitermination factor NusB [Staphylococcus caprae
           C87]
          Length = 129

 Score =  136 bits (344), Expect = 8e-31,   Method: Composition-based stats.
 Identities = 38/138 (27%), Positives = 59/138 (42%), Gaps = 13/138 (9%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           R  +R+ A Q L+Q+++        +S  E   F  D        Y  +D ++   ++ G
Sbjct: 3   RKESRIQAFQTLFQLEMKESD----LSITEAINFIKD-------DYPDLDFDFINWLVTG 51

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
           V D +  +D      L + WS  RL      ILR    E++     P +VII+E V +  
Sbjct: 52  VKDHEAVLDEKFKPYL-KDWSIERLLKSDRIILRMATFEMLHS-DTPEKVIINEAVELTK 109

Query: 136 DFFYGDEPKFINAVLDKV 153
            F      KFIN VL  +
Sbjct: 110 QFSDDGHYKFINGVLSNI 127


>gi|262196667|ref|YP_003267876.1| NusB antitermination factor [Haliangium ochraceum DSM 14365]
 gi|262080014|gb|ACY15983.1| NusB antitermination factor [Haliangium ochraceum DSM 14365]
          Length = 150

 Score =  136 bits (344), Expect = 8e-31,   Method: Composition-based stats.
 Identities = 41/156 (26%), Positives = 71/156 (45%), Gaps = 12/156 (7%)

Query: 10  LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF 69
           +K+  RR  AR  A+Q LY +D+      E       Y    D  +D E+       ++ 
Sbjct: 1   MKVGARRR-ARSYALQVLYALDLN--PLEEPTRALLEYAGRFDLRIDEEAG------DFA 51

Query: 70  RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISE 129
           R +I  V    + ID  I +  +  W   R+  +  ++LR  V EL +       V+I+E
Sbjct: 52  RSLIEQVYPHLERIDERIQTA-SRNWRIERMSRVDRNVLRLAVGELSQPDGAAARVVINE 110

Query: 130 YVCIAHDFFYGDEPKFINAVLDKV--SRKEEIKRSG 163
            V +A  F   + P F+N +LD+V   ++++   +G
Sbjct: 111 AVELAKRFGTTESPAFVNGILDRVDQHKRDDANPNG 146


>gi|145630810|ref|ZP_01786588.1| transcription antitermination protein NusB [Haemophilus influenzae
           R3021]
 gi|144983692|gb|EDJ91152.1| transcription antitermination protein NusB [Haemophilus influenzae
           R3021]
          Length = 121

 Score =  136 bits (344), Expect = 8e-31,   Method: Composition-based stats.
 Identities = 36/127 (28%), Positives = 60/127 (47%), Gaps = 13/127 (10%)

Query: 28  YQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLI 87
           Y   + G +  ++        F  D ++D       VD  +FR +    ++  + +D  I
Sbjct: 2   YSWAVSGNTAEQV-----ELAFVLDQDMDG------VDKPYFRKLFRQTIENIETVDFSI 50

Query: 88  SSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFIN 147
           S  +    +F  LD I  +ILR  V EL     VP +V+I+E + +A  F   +  K+IN
Sbjct: 51  SPYIDR--AFDELDPIETAILRLAVYELRFELDVPYKVVINEAIEVAKVFGADESHKYIN 108

Query: 148 AVLDKVS 154
            VLDK++
Sbjct: 109 GVLDKIA 115


>gi|291542871|emb|CBL15981.1| transcription antitermination factor NusB [Ruminococcus bromii
           L2-63]
          Length = 164

 Score =  136 bits (344), Expect = 8e-31,   Method: Composition-based stats.
 Identities = 36/141 (25%), Positives = 63/141 (44%), Gaps = 14/141 (9%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           R  +R  A   L+          E I              D   +++     + + ++ G
Sbjct: 31  RSESREQAFMLLFSKSFDDEPLEETID-------------DNSEMFVGGVCAYAQAVVSG 77

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
           + D+ + ID +I+S L + W+ SR+     +ILR  + E+    +VP  V I+E V +A 
Sbjct: 78  IEDKHEEIDEIIASHLKKGWTLSRISKPSLAILRLAIYEMKYLDNVPQSVSINEAVELAK 137

Query: 136 DFFYGDEPKFINAVLDKVSRK 156
            +   DE KF+N +L   SR+
Sbjct: 138 KY-TIDESKFVNGILGTYSRE 157


>gi|329903611|ref|ZP_08273569.1| Transcription termination protein NusB [Oxalobacteraceae bacterium
           IMCC9480]
 gi|327548271|gb|EGF32966.1| Transcription termination protein NusB [Oxalobacteraceae bacterium
           IMCC9480]
          Length = 157

 Score =  136 bits (344), Expect = 9e-31,   Method: Composition-based stats.
 Identities = 40/157 (25%), Positives = 63/157 (40%), Gaps = 16/157 (10%)

Query: 9   DLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEW 68
             K    R  +R  A+Q LYQ  +       I +            L     +   D   
Sbjct: 11  PNKSRTPRHRSREFALQGLYQWLLNNEDAGVIEA-----------HLREAHGFDKADAVH 59

Query: 69  FRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIIS 128
           F  +++G + +   +   +   +      S+L  I  +IL  G  EL     +P +VII+
Sbjct: 60  FDALLYGTIKQADALRTDLLPLIDR--PLSQLSPIEHAILLIGAYELKNHIEIPYKVIIN 117

Query: 129 EYVCIAHDFFYGDEPKFINAVLDKVS---RKEEIKRS 162
           E V +A  F   D  K++N VLDK +   R+ EI  S
Sbjct: 118 ESVELAKSFGGIDGHKYVNGVLDKFAAKTREVEIAAS 154


>gi|55821710|ref|YP_140152.1| transcription antitermination protein NusB [Streptococcus
           thermophilus LMG 18311]
 gi|55823630|ref|YP_142071.1| transcription antitermination protein NusB [Streptococcus
           thermophilus CNRZ1066]
 gi|116628433|ref|YP_821052.1| transcription antitermination protein NusB [Streptococcus
           thermophilus LMD-9]
 gi|81558964|sp|Q5LY62|NUSB_STRT1 RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|81560152|sp|Q5M2R7|NUSB_STRT2 RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|122266972|sp|Q03IW6|NUSB_STRTD RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|55737695|gb|AAV61337.1| transcriptional termination factor [Streptococcus thermophilus LMG
           18311]
 gi|55739615|gb|AAV63256.1| transcriptional termination factor [Streptococcus thermophilus
           CNRZ1066]
 gi|116101710|gb|ABJ66856.1| Transcription termination factor [Streptococcus thermophilus LMD-9]
 gi|312279051|gb|ADQ63708.1| Transcription antitermination factor NusB [Streptococcus
           thermophilus ND03]
          Length = 144

 Score =  136 bits (344), Expect = 9e-31,   Method: Composition-based stats.
 Identities = 41/143 (28%), Positives = 62/143 (43%), Gaps = 9/143 (6%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLE-WFRVIIH 74
           R   R  A Q L+ ++  G +  +       + +  D  +D E     VDL  +   ++ 
Sbjct: 9   RRDLRERAFQTLFALEFGGEALDQA-----YFAYTYDKPIDEE---TEVDLPSFLLSLVT 60

Query: 75  GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134
           GV +    +D  I   L E WS SRL M   ++LR G+ E+      P  V I+E + IA
Sbjct: 61  GVREELPQLDSQIEEKLKEGWSLSRLIMTDRTLLRLGLYEITSFEETPGRVAINEIIEIA 120

Query: 135 HDFFYGDEPKFINAVLDKVSRKE 157
             +      KFIN VL +    E
Sbjct: 121 KKYSDKTSAKFINGVLSQFVTDE 143


>gi|326390202|ref|ZP_08211763.1| NusB antitermination factor [Thermoanaerobacter ethanolicus JW 200]
 gi|325993850|gb|EGD52281.1| NusB antitermination factor [Thermoanaerobacter ethanolicus JW 200]
          Length = 140

 Score =  136 bits (343), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 34/148 (22%), Positives = 63/148 (42%), Gaps = 14/148 (9%)

Query: 15  RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74
            R  AR   V+ LYQ D+     ++I   +       + +            E+    + 
Sbjct: 2   NRTEAREWIVKMLYQYDVSRLPISKIFENFYKENDPGEQK------------EYIENTVI 49

Query: 75  GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134
           G ++  + ID  I    ++ W+ +R+  I  +ILR  + E+    ++PV + I+E V IA
Sbjct: 50  GAIEHLEEIDKEIERY-SQNWALNRMPKIDLAILRCSIYEMQYG-NIPVNISINEAVEIA 107

Query: 135 HDFFYGDEPKFINAVLDKVSRKEEIKRS 162
             +   D   FIN +L    R + ++  
Sbjct: 108 KKYSTEDSHVFINGLLGAFVRDKGLEEG 135


>gi|323699091|ref|ZP_08111003.1| NusB antitermination factor [Desulfovibrio sp. ND132]
 gi|323459023|gb|EGB14888.1| NusB antitermination factor [Desulfovibrio desulfuricans ND132]
          Length = 149

 Score =  136 bits (343), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 32/140 (22%), Positives = 54/140 (38%), Gaps = 8/140 (5%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           R + R  A Q LY    +                  D    V          + R ++ G
Sbjct: 13  RRVGRTLAFQVLYSTHFLDK------ENPLDMDTLFDLNPMVVEQESETARAFARDLVRG 66

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
           V      ID  I    ++ W   R+ M+  SILR  + E++    +PV+  I+E + ++ 
Sbjct: 67  VSVNLHDIDRTIEEH-SQHWKIERIAMVELSILRLSLYEMLFT-DIPVKAAINEAIELSK 124

Query: 136 DFFYGDEPKFINAVLDKVSR 155
            F       F+N +LD V++
Sbjct: 125 TFGDDKSRSFVNGILDGVAK 144


>gi|163793217|ref|ZP_02187193.1| NusB antitermination factor [alpha proteobacterium BAL199]
 gi|159181863|gb|EDP66375.1| NusB antitermination factor [alpha proteobacterium BAL199]
          Length = 139

 Score =  136 bits (343), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 43/126 (34%), Positives = 68/126 (53%), Gaps = 3/126 (2%)

Query: 30  IDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISS 89
           +++ G S  E++ E+   RF    E          D ++F  ++ GV      +D +++ 
Sbjct: 1   MEVSGKSGHEVVPEFVGRRFAGLIEG---GDMAPADPKFFERLVLGVAGEMPTLDGMLAD 57

Query: 90  CLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAV 149
           CL  +    RL+++L +I R G  EL+    VPV V+ISEYV + H FF G EP  +N V
Sbjct: 58  CLQPEGHLERLEVVLRAIFRLGTYELLSVDDVPVRVVISEYVDLTHAFFAGREPGLVNGV 117

Query: 150 LDKVSR 155
           LDK++R
Sbjct: 118 LDKIAR 123


>gi|294788786|ref|ZP_06754027.1| transcription antitermination factor NusB [Simonsiella muelleri
           ATCC 29453]
 gi|294483268|gb|EFG30954.1| transcription antitermination factor NusB [Simonsiella muelleri
           ATCC 29453]
          Length = 156

 Score =  136 bits (343), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 39/149 (26%), Positives = 61/149 (40%), Gaps = 14/149 (9%)

Query: 6   NKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVD 65
            +K L  S RR  AR   VQALYQ  +      EI +    +           + +   D
Sbjct: 2   TEKKLHKSPRRR-AREFVVQALYQAALNQKPAPEIANFLREH-----------TDFKRAD 49

Query: 66  LEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEV 125
            E F  +  G    ++   +LI   L        ++ I  +IL     EL      P  V
Sbjct: 50  AELFDALFFGTNANQRAYMMLIRPHLDRDEKL--INPIERAILLMATHELKTMPETPHAV 107

Query: 126 IISEYVCIAHDFFYGDEPKFINAVLDKVS 154
           +I+E + +   F   D  KF+N++LDK++
Sbjct: 108 VINEAIEVTKTFGGTDSHKFVNSILDKLA 136


>gi|332286886|ref|YP_004418797.1| transcription antitermination protein NusB [Pusillimonas sp. T7-7]
 gi|330430839|gb|AEC22173.1| transcription antitermination protein NusB [Pusillimonas sp. T7-7]
          Length = 166

 Score =  136 bits (343), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 36/147 (24%), Positives = 63/147 (42%), Gaps = 12/147 (8%)

Query: 21  LAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRK 80
             A+Q +Y   + G +  +   E + +       +  +  +   D  WF+ ++HGV+   
Sbjct: 28  EFALQGVYAWLLRGDAGLQEAGEIDAH-------IRDDEEFHDADATWFKTLLHGVLREA 80

Query: 81  QHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYG 140
             +       +        L  I   IL  G  EL+    VP +V I+E V +A  F   
Sbjct: 81  PALRERFMPHVDR--PLEELSPIEHGILLIGSYELVHHIEVPYKVAINEAVELAKSFGGT 138

Query: 141 DEPKFINAVLDKVS---RKEEIKRSGC 164
           D  KF+N VLDK++   R +E++ +  
Sbjct: 139 DGFKFVNGVLDKMAADVRSQEVQAAAR 165


>gi|203287574|ref|YP_002222589.1| N-utilization substance protein B [Borrelia recurrentis A1]
 gi|201084794|gb|ACH94368.1| N-utilization substance protein B [Borrelia recurrentis A1]
          Length = 146

 Score =  136 bits (343), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 41/144 (28%), Positives = 67/144 (46%), Gaps = 10/144 (6%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           R  AR+ A Q +Y ID+   +   I   +       D + D++         ++ V+++G
Sbjct: 6   RHKARILAFQKIYSIDVNCKAKDNIFDIFSFEENGIDLDGDLKL--------FYSVLVNG 57

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECH-SVPVEVIISEYVCIA 134
             D  + ID LIS  ++  W   R+D +  +ILR  V  L      VP  VII E + IA
Sbjct: 58  TYDNLESIDKLISG-ISLNWRLDRMDKVDLAILRMSVYSLKFQDLDVPKRVIIDEAILIA 116

Query: 135 HDFFYGDEPKFINAVLDKVSRKEE 158
             +   +  KF+N +LD + +  E
Sbjct: 117 KKYGNKNSDKFVNGILDALLKDME 140


>gi|313884728|ref|ZP_07818484.1| transcription antitermination factor NusB [Eremococcus coleocola
           ACS-139-V-Col8]
 gi|312620096|gb|EFR31529.1| transcription antitermination factor NusB [Eremococcus coleocola
           ACS-139-V-Col8]
          Length = 158

 Score =  136 bits (343), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 38/139 (27%), Positives = 62/139 (44%), Gaps = 7/139 (5%)

Query: 14  HRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVII 73
             R  AR  AVQALY  D     +   + +     F  ++    +  Y  V  ++  +++
Sbjct: 6   ENRSQARQVAVQALY--DYTHFESNNDLDQ--ALDFALESGHFPDQGYDEVANDYLYLLL 61

Query: 74  HGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECH--SVPVEVIISEYV 131
           +GV+D    ID  I   L + W+ +R+  I  +ILR    EL+      VP  V + E +
Sbjct: 62  NGVVDHLSEIDAHIEKYL-KNWTLARIARIDLNILRVAFFELLYMDKEDVPARVTVDEAI 120

Query: 132 CIAHDFFYGDEPKFINAVL 150
            ++  F      +FIN VL
Sbjct: 121 ELSKFFSDDKSRQFINGVL 139


>gi|152991103|ref|YP_001356825.1| transcription antitermination protein NusB [Nitratiruptor sp.
           SB155-2]
 gi|166215704|sp|A6Q4Q9|NUSB_NITSB RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|151422964|dbj|BAF70468.1| transcription antitermination factor NusB [Nitratiruptor sp.
           SB155-2]
          Length = 139

 Score =  136 bits (343), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 36/143 (25%), Positives = 60/143 (41%), Gaps = 13/143 (9%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           R  AR A +  LY  D+      +   +    +   + +            E+   +  G
Sbjct: 4   RHQAREAVIGLLYAYDLGNPEIKKFAEDILEEKKIRNKQ-----------REFALALFKG 52

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
            ++    ID +I   L E W   R+  I  +ILR GV EL     +   ++I+E V +A 
Sbjct: 53  TVEHLDTIDEMIKKHL-ESWDMERVGHIERAILRLGVYELFYT-DLDPAIVINEAVELAK 110

Query: 136 DFFYGDEPKFINAVLDKVSRKEE 158
                  PKFIN VLD ++++ +
Sbjct: 111 KLGTDQSPKFINGVLDAIAKEVK 133


>gi|302380357|ref|ZP_07268827.1| transcription antitermination factor NusB [Finegoldia magna
           ACS-171-V-Col3]
 gi|302311847|gb|EFK93858.1| transcription antitermination factor NusB [Finegoldia magna
           ACS-171-V-Col3]
          Length = 137

 Score =  136 bits (343), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 36/143 (25%), Positives = 72/143 (50%), Gaps = 12/143 (8%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           R  +R +A+Q +Y++++      + I E+  Y+                D+E+F+ I+  
Sbjct: 3   RRQSRKSAMQLIYEMNMNEDYDKQRIEEFCKYQNIN-----------KNDIEFFKEIVLN 51

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
            ++    I  +I +  T++W+  R++ +  SIL+ GV E++   S P  V I+E V +A 
Sbjct: 52  FIEHIDDIVNIIENN-TKQWNLDRINKLDLSILQVGVCEILYVESTPDSVAINEAVELAK 110

Query: 136 DFFYGDEPKFINAVLDKVSRKEE 158
           ++       FIN +L  V +++E
Sbjct: 111 EYSTEKSYSFINGILGSVLKRKE 133


>gi|320547470|ref|ZP_08041756.1| transcription antitermination factor NusB [Streptococcus equinus
           ATCC 9812]
 gi|320447815|gb|EFW88572.1| transcription antitermination factor NusB [Streptococcus equinus
           ATCC 9812]
          Length = 142

 Score =  136 bits (343), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 32/144 (22%), Positives = 56/144 (38%), Gaps = 7/144 (4%)

Query: 11  KLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFR 70
             ++ R   R  A QAL+ ++                 F    +  +E         +  
Sbjct: 4   NFTNSRRDLRERAFQALFSLEF-------DREYLAAAEFAYTYDKTIEEDEDVQVPVFLL 56

Query: 71  VIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEY 130
            ++ GV D +  +D  I + L   WS  RL +   S+LR G+ E+      P  V ++E 
Sbjct: 57  NLVKGVCDMQAELDQQIEAHLKAGWSLERLTLTDKSLLRLGLYEVRYFEETPGRVAVNEI 116

Query: 131 VCIAHDFFYGDEPKFINAVLDKVS 154
           + IA  +      KF+N +L +  
Sbjct: 117 IEIAKKYSDETSAKFVNGLLSQFV 140


>gi|34580842|ref|ZP_00142322.1| N utilization substance protein B [Rickettsia sibirica 246]
 gi|229586404|ref|YP_002844905.1| transcription antitermination protein NusB [Rickettsia africae
           ESF-5]
 gi|259514889|sp|C3PMK2|NUSB_RICAE RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|28262227|gb|EAA25731.1| N utilization substance protein B [Rickettsia sibirica 246]
 gi|228021454|gb|ACP53162.1| N utilization substance protein B [Rickettsia africae ESF-5]
          Length = 156

 Score =  136 bits (343), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 41/145 (28%), Positives = 84/145 (57%), Gaps = 2/145 (1%)

Query: 14  HRRGIARLAAVQALYQ-IDIIGCSTTEIISEYETYRFCADTELD-VESVYLHVDLEWFRV 71
           +++ IAR+AAVQA+YQ I        +I+    ++    ++  D  E++ + + +  F++
Sbjct: 7   NKKSIARIAAVQAIYQNILQNNDDMDDIMQNVLSFYQNNNSITDLPENLKISLSISHFKM 66

Query: 72  IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
           ++  V +    +D +I + LT     + + ++L ++LR  + EL+ C + P +V+I+EY 
Sbjct: 67  LVKSVFENIHKLDEIIDNHLTNDKDPAHMPILLRALLRVSICELLFCPTTPAKVVINEYT 126

Query: 132 CIAHDFFYGDEPKFINAVLDKVSRK 156
            IA+D     E  F+N+VLDK++++
Sbjct: 127 DIANDMLNEHEIGFVNSVLDKIAKE 151


>gi|325693662|gb|EGD35581.1| N utilization substance protein B [Streptococcus sanguinis SK150]
          Length = 143

 Score =  136 bits (343), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 34/138 (24%), Positives = 62/138 (44%), Gaps = 6/138 (4%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           R   R  A QAL  ++  G      + E   + +  D + D ++        +   ++ G
Sbjct: 9   RRGLRQRAFQALMSLEYEGD-----LVEACRFAYSYDKDEDADNAAEADIPAFLLNLVSG 63

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
           V+  K  +D  I+  L + W+  RL ++  +ILR G+ E+ E    P  V ++E + ++ 
Sbjct: 64  VVQSKDDLDKKIAQHLKKGWTVDRLTLVEKNILRLGIFEITEF-DTPQLVAVNEAIELSK 122

Query: 136 DFFYGDEPKFINAVLDKV 153
            F      KFIN +L + 
Sbjct: 123 QFSDEKSSKFINGILSQF 140


>gi|328947375|ref|YP_004364712.1| NusB antitermination factor [Treponema succinifaciens DSM 2489]
 gi|328447699|gb|AEB13415.1| NusB antitermination factor [Treponema succinifaciens DSM 2489]
          Length = 161

 Score =  136 bits (343), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 45/160 (28%), Positives = 76/160 (47%), Gaps = 21/160 (13%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYL------------- 62
           R   R+ AVQALY  D+   S  +++   +      D+E +    ++             
Sbjct: 3   RRNGRIFAVQALYSYDVGKASLEDLL---KLEWLKEDSENNPSGKFVLPETVTETSETED 59

Query: 63  -----HVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIE 117
                    ++ R++I G ++  Q ID  I + LT  W+F RL+ +  SILR  V  L+ 
Sbjct: 60  FSQSRAESYDFARLLISGTINHIQEIDEKIKAHLTANWNFDRLNRVTLSILRISVFALLY 119

Query: 118 CHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKE 157
              +   +II E + I+ +F   D  +FINA+LD +S++E
Sbjct: 120 QKELKPTIIIDEAIAISKEFGTDDSFRFINAILDTISKEE 159


>gi|34497846|ref|NP_902061.1| transcription antitermination protein NusB [Chromobacterium
           violaceum ATCC 12472]
 gi|39931749|sp|Q7NVF2|NUSB_CHRVO RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|34103702|gb|AAQ60063.1| N utilization substance protein B [Chromobacterium violaceum ATCC
           12472]
          Length = 149

 Score =  136 bits (343), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 36/147 (24%), Positives = 62/147 (42%), Gaps = 14/147 (9%)

Query: 10  LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF 69
           +K + RR  AR  AVQ +Y+ ++       +I          +  L     +   D   F
Sbjct: 1   MKTARRR--AREFAVQGIYEWELNPDRPASLI----------EKHLRENEYFAKADEALF 48

Query: 70  RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISE 129
           R I++GV+   + +   +            +  +  ++L    LEL +    P  VII+E
Sbjct: 49  RSILYGVLKDVELLSAQVGRYYERAE--DEVSPVERAVLLMAALELTQSPETPYPVIINE 106

Query: 130 YVCIAHDFFYGDEPKFINAVLDKVSRK 156
            + I   F   D  KF+N VLDK++ +
Sbjct: 107 AIEITKTFGGTDGHKFVNGVLDKLAAE 133


>gi|15892127|ref|NP_359841.1| transcription antitermination protein NusB [Rickettsia conorii str.
           Malish 7]
 gi|20139047|sp|Q92J65|NUSB_RICCN RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|15619255|gb|AAL02742.1| N utilization substance protein B [Rickettsia conorii str. Malish
           7]
          Length = 156

 Score =  136 bits (343), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 41/145 (28%), Positives = 83/145 (57%), Gaps = 2/145 (1%)

Query: 14  HRRGIARLAAVQALYQ-IDIIGCSTTEIISEYETYRFCADTELD-VESVYLHVDLEWFRV 71
           +++ IAR+AAVQA+YQ I        +I+    ++    +   D  E++ + + +  F++
Sbjct: 7   NKKSIARIAAVQAIYQNILQNNDDMDDIMQNVLSFYQNNNAITDLPENLKISLSISHFKM 66

Query: 72  IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
           ++  V +    +D +I + LT     + + ++L ++LR  + EL+ C + P +V+I+EY 
Sbjct: 67  LVKSVFENIHKLDEIIDNHLTNDKDPAHMPILLRALLRVSICELLFCPTTPAKVVINEYT 126

Query: 132 CIAHDFFYGDEPKFINAVLDKVSRK 156
            IA+D     E  F+N+VLDK++++
Sbjct: 127 DIANDMLNEHEIGFVNSVLDKIAKE 151


>gi|67459511|ref|YP_247135.1| transcription antitermination protein NusB [Rickettsia felis
           URRWXCal2]
 gi|75536082|sp|Q4UKG1|NUSB_RICFE RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|67005044|gb|AAY61970.1| N utilization substance protein B [Rickettsia felis URRWXCal2]
          Length = 156

 Score =  135 bits (342), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 40/147 (27%), Positives = 82/147 (55%), Gaps = 2/147 (1%)

Query: 14  HRRGIARLAAVQALYQIDIIGCSTTEIISE--YETYRFCADTELDVESVYLHVDLEWFRV 71
           +++ IAR+AAVQA+YQ  +      + I +     Y+    T    E++ + + +  F++
Sbjct: 7   NKKSIARIAAVQAIYQNILQNNDDMDDIMQNVLSFYQNNNSTTALPENLKISLSISHFKM 66

Query: 72  IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
           ++  V +    +D +I + LT     + + ++L ++LR  + EL+ C + P +V+I+EY 
Sbjct: 67  LVKSVFENINKLDEIIDNHLTNDKDPAHMPILLRALLRVSICELLFCPTTPAKVVINEYT 126

Query: 132 CIAHDFFYGDEPKFINAVLDKVSRKEE 158
            IA+D     E  F+N++LDK++++  
Sbjct: 127 DIANDMLNEHEIGFVNSILDKIAQENN 153


>gi|332363255|gb|EGJ41040.1| N utilization substance protein B [Streptococcus sanguinis SK49]
          Length = 143

 Score =  135 bits (342), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 35/138 (25%), Positives = 62/138 (44%), Gaps = 6/138 (4%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           R   R  A QAL  ++  G      + E   + +  D + D + V       +   ++ G
Sbjct: 9   RRGLRQRAFQALMSLEYEGD-----LVEACRFAYSYDKDEDADKVAEADIPAFLLNLVSG 63

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
           V+  K  +D  I+  L + W+  RL ++  +ILR G+ E+ E    P  V ++E + ++ 
Sbjct: 64  VVQSKDDLDKKIAQHLKKGWTVDRLTLVEKNILRLGIFEITEF-DTPQLVAVNEAIELSK 122

Query: 136 DFFYGDEPKFINAVLDKV 153
            F      KFIN +L + 
Sbjct: 123 QFSDEKSSKFINGILSQF 140


>gi|301059426|ref|ZP_07200347.1| leucine--tRNA ligase [delta proteobacterium NaphS2]
 gi|300446462|gb|EFK10306.1| leucine--tRNA ligase [delta proteobacterium NaphS2]
          Length = 1011

 Score =  135 bits (342), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 30/132 (22%), Positives = 54/132 (40%), Gaps = 12/132 (9%)

Query: 22  AAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQ 81
            A+Q L+ ++       E        R  ++             + + R ++ GV  RK 
Sbjct: 1   MALQVLFHLEYSDDDPLE------ACRLISEN-----FEMAEASVAFSRDLVSGVCQRKT 49

Query: 82  HIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGD 141
            +D +I    ++ W   R+  +  SILR    E++    +P  V + E V +   F   D
Sbjct: 50  ILDRVIGRS-SKHWRLERMARLDRSILRLATYEMLYLEDIPPRVSLDEAVELGKRFGSED 108

Query: 142 EPKFINAVLDKV 153
             ++IN VLD +
Sbjct: 109 SGRYINGVLDNI 120


>gi|239618474|ref|YP_002941796.1| NusB antitermination factor [Kosmotoga olearia TBF 19.5.1]
 gi|239507305|gb|ACR80792.1| NusB antitermination factor [Kosmotoga olearia TBF 19.5.1]
          Length = 148

 Score =  135 bits (342), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 44/152 (28%), Positives = 74/152 (48%), Gaps = 12/152 (7%)

Query: 13  SHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVI 72
           + +R   R    ++++Q D           EY   R  A   LD ES          +  
Sbjct: 6   TGQRRKIREIVFRSIFQYDFHKDFP--AAMEYLE-RETAFYSLDKESKNR------AKGY 56

Query: 73  IHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVC 132
           + G+++    ID +I++ L + W+F RL  I  S+LR    EL+    VP+EV ++E + 
Sbjct: 57  LMGIIEHLDEIDSIITAYL-KNWTFDRLASIDRSVLRLATYELLYVDDVPIEVTLNEAIE 115

Query: 133 IAHDFFYGDEPKFINAVLDKVSRKE--EIKRS 162
           I   +   +E KF+N VLDK++++   E KR+
Sbjct: 116 ITKKYGSQEEGKFVNGVLDKIAKERVSEEKRA 147


>gi|203284032|ref|YP_002221772.1| N-utilization substance protein B [Borrelia duttonii Ly]
 gi|201083475|gb|ACH93066.1| N-utilization substance protein B [Borrelia duttonii Ly]
          Length = 146

 Score =  135 bits (342), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 41/144 (28%), Positives = 67/144 (46%), Gaps = 10/144 (6%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           R  AR+ A Q +Y ID+   +   I   +       D + D++         ++ V+++G
Sbjct: 6   RHKARVLAFQKIYSIDVNCKAKDNIFDIFSFEENGIDLDGDLKL--------FYSVLVNG 57

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECH-SVPVEVIISEYVCIA 134
             D  + ID LIS  ++  W   R+D +  +ILR  V  L      VP  VII E + IA
Sbjct: 58  TYDNLESIDKLISG-ISLNWRLDRMDKVDLAILRMSVYSLKFQDLDVPKRVIIDEAILIA 116

Query: 135 HDFFYGDEPKFINAVLDKVSRKEE 158
             +   +  KF+N +LD + +  E
Sbjct: 117 KKYGNKNSDKFVNGILDALLKDME 140


>gi|148544409|ref|YP_001271779.1| transcription antitermination protein NusB [Lactobacillus reuteri
           DSM 20016]
 gi|184153772|ref|YP_001842113.1| transcription antitermination protein NusB [Lactobacillus reuteri
           JCM 1112]
 gi|166918809|sp|A5VKR8|NUSB_LACRD RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|229620058|sp|B2G851|NUSB_LACRJ RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|148531443|gb|ABQ83442.1| NusB antitermination factor [Lactobacillus reuteri DSM 20016]
 gi|183225116|dbj|BAG25633.1| transcription termination factor [Lactobacillus reuteri JCM 1112]
          Length = 138

 Score =  135 bits (342), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 34/150 (22%), Positives = 61/150 (40%), Gaps = 12/150 (8%)

Query: 12  LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71
           +S  R + R  A Q L+ +     S  +I + YE      + ++            +   
Sbjct: 1   MSLNRHMIREEAFQVLFALQ--SDSEADIQTVYEAIPHHDEKQIP----------PYLLT 48

Query: 72  IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
           +++GV + +  +D  I+  L   W+ +RL      ILR  + E+    +VP  V I+E +
Sbjct: 49  LVNGVREHQDQLDEQINDLLASGWTINRLAKPDLVILRLALFEIQYAENVPTVVAINEAL 108

Query: 132 CIAHDFFYGDEPKFINAVLDKVSRKEEIKR 161
            +   F      KFIN  L K  ++     
Sbjct: 109 ELTKTFSSDKSRKFINGALGKFEKQVNENN 138


>gi|325697632|gb|EGD39517.1| N utilization substance protein B [Streptococcus sanguinis SK160]
          Length = 143

 Score =  135 bits (342), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 35/138 (25%), Positives = 62/138 (44%), Gaps = 6/138 (4%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           R   R  A QAL  ++  G      + E   + +  D + + + V       +   ++ G
Sbjct: 9   RRGLRQRAFQALMSLEYEGD-----LVEACRFAYSYDKDEEADKVAEADIPAFLLNLVSG 63

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
           V+  K  +D  I+  L + W+  RL ++  +ILR G+ E+ E    P  V ++E + ++ 
Sbjct: 64  VVQSKDDLDKKIAQHLKKGWTVDRLTLVEKNILRLGIFEITEF-DTPQLVAVNEAIELSK 122

Query: 136 DFFYGDEPKFINAVLDKV 153
            F      KFIN +L K 
Sbjct: 123 QFSDEKSSKFINGILSKF 140


>gi|269795098|ref|YP_003314553.1| NusB antitermination factor [Sanguibacter keddieii DSM 10542]
 gi|269097283|gb|ACZ21719.1| NusB antitermination factor [Sanguibacter keddieii DSM 10542]
          Length = 138

 Score =  135 bits (342), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 30/138 (21%), Positives = 60/138 (43%), Gaps = 12/138 (8%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           R  AR  A+  L++ +        ++++              E        ++   I+ G
Sbjct: 4   RTKARKRALDVLFEAEQRHLDPITLLADRVA-----------EPGTEASLPQYSVDIVEG 52

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
           V+++   ID L+ +  + +WS  R+  +  ++LR G  E++    VP  V I E V ++ 
Sbjct: 53  VLEQLDRIDELLETY-SHEWSLDRMPAVDRALLRIGTWEILFNDEVPDAVAIDEAVELSR 111

Query: 136 DFFYGDEPKFINAVLDKV 153
                D P F+N +L ++
Sbjct: 112 SLSTDDSPVFVNGLLGRI 129


>gi|119952909|ref|YP_945118.1| transcription antitermination protein NusB [Borrelia turicatae
           91E135]
 gi|119861680|gb|AAX17448.1| N utilization substance protein B [Borrelia turicatae 91E135]
          Length = 146

 Score =  135 bits (342), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 41/144 (28%), Positives = 68/144 (47%), Gaps = 10/144 (6%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           R  AR+ A Q +Y IDI   +   I   +       + E +++         ++ V+++G
Sbjct: 6   RHKARVLAFQKIYSIDINCKAKDNIYDIFNLEDHGLELEENLKL--------FYSVLVNG 57

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECH-SVPVEVIISEYVCIA 134
             D  + ID LIS  ++  W   R+D +  +ILR  V  L   +  VP  VII E + IA
Sbjct: 58  TYDNLEFIDKLISD-ISLNWRLDRMDKVDLAILRMSVYSLKFQNLDVPKRVIIDEAILIA 116

Query: 135 HDFFYGDEPKFINAVLDKVSRKEE 158
             +   +  KF+N +LD + +  E
Sbjct: 117 KKYGSKNSYKFVNGILDALLKNME 140


>gi|294670752|ref|ZP_06735614.1| hypothetical protein NEIELOOT_02461 [Neisseria elongata subsp.
           glycolytica ATCC 29315]
 gi|291307540|gb|EFE48783.1| hypothetical protein NEIELOOT_02461 [Neisseria elongata subsp.
           glycolytica ATCC 29315]
          Length = 143

 Score =  135 bits (342), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 43/156 (27%), Positives = 60/156 (38%), Gaps = 17/156 (10%)

Query: 10  LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF 69
           +K S RR  AR   VQALYQ  +   S  EI              +   + +   D + F
Sbjct: 1   MKTSPRRR-AREFTVQALYQAALNHASAPEIA-----------KNIREAADFKRADADLF 48

Query: 70  RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISE 129
             +  G          +I   L        ++ I   IL     EL      P  VII+E
Sbjct: 49  TALFFGAHGNSAEYMQIIRPLLDRDEK--DINPIERGILLMACHELSAMPETPYPVIINE 106

Query: 130 YVCIAHDFFYGDEPKFINAVLDKVS---RKEEIKRS 162
            + +   F   D  KFIN +LDK+S   R  + KR+
Sbjct: 107 AIEVTKTFGGTDSHKFINGILDKLSVQLRPNDPKRA 142


>gi|194466519|ref|ZP_03072506.1| NusB antitermination factor [Lactobacillus reuteri 100-23]
 gi|194453555|gb|EDX42452.1| NusB antitermination factor [Lactobacillus reuteri 100-23]
          Length = 138

 Score =  135 bits (342), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 33/150 (22%), Positives = 60/150 (40%), Gaps = 12/150 (8%)

Query: 12  LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71
           +S  R + R  A Q L+ +        +I + YE      + ++            +   
Sbjct: 1   MSLNRHMIREEAFQVLFALQ--SDPEADIQTVYEAIPHHDEKQIP----------PYLLT 48

Query: 72  IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
           +++GV + +  +D  I+  L   W+ +RL      ILR  + E+    +VP  V I+E +
Sbjct: 49  LVNGVREHQDQLDEQINDLLASGWTINRLAKPDLVILRLALFEIQYAENVPTVVAINEAL 108

Query: 132 CIAHDFFYGDEPKFINAVLDKVSRKEEIKR 161
            +   F      KFIN  L K  ++     
Sbjct: 109 ELTKTFSSDKSRKFINGALGKFEKQVNENN 138


>gi|108804294|ref|YP_644231.1| NusB antitermination factor [Rubrobacter xylanophilus DSM 9941]
 gi|119390815|sp|Q1AW09|NUSB_RUBXD RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|108765537|gb|ABG04419.1| NusB antitermination factor [Rubrobacter xylanophilus DSM 9941]
          Length = 139

 Score =  135 bits (342), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 38/152 (25%), Positives = 65/152 (42%), Gaps = 19/152 (12%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           R  AR  A   LYQ D+ G     +I  +  YR   +              ++   ++ G
Sbjct: 3   RRTARKQAFFILYQSDVTGSPAEPLIGRWRAYRGELE--------------DYAERVVRG 48

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
           V   ++ +D ++   ++E W   R+  +  +ILR  + E++    VP EV ++E V +A 
Sbjct: 49  VERERERLDAVLDG-VSEGWPVWRMSAVDRTILRLALYEMLHVQDVPPEVAVNEAVELAK 107

Query: 136 DFFYGDEPKFINAVL----DKVSRKEEIKRSG 163
            F   + P F+  VL    DK+  K      G
Sbjct: 108 GFSGEEAPSFVGGVLRGAEDKIFGKVGDGEPG 139


>gi|294648615|ref|ZP_06726078.1| transcription antitermination protein NusB [Acinetobacter
           haemolyticus ATCC 19194]
 gi|292825491|gb|EFF84231.1| transcription antitermination protein NusB [Acinetobacter
           haemolyticus ATCC 19194]
          Length = 149

 Score =  135 bits (341), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 38/135 (28%), Positives = 63/135 (46%), Gaps = 13/135 (9%)

Query: 22  AAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQ 81
            AVQ +Y+  +      EI +              VE+    VDL ++  ++  V+ + +
Sbjct: 18  FAVQGIYEWQMSQNPVHEIEA-----------RTRVENAMHKVDLNYYHELLTQVVAQHE 66

Query: 82  HIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGD 141
            +D L+   L  +   S LD +  + LR G  EL +   VP  V++ E + +A  F   D
Sbjct: 67  ALDELLVPVLDRE--LSALDGVELATLRLGAYELRDHLEVPYRVVLDEAIELAKHFGGAD 124

Query: 142 EPKFINAVLDKVSRK 156
             K+IN VLD++S K
Sbjct: 125 SHKYINGVLDRLSSK 139


>gi|325107333|ref|YP_004268401.1| NusB antitermination factor [Planctomyces brasiliensis DSM 5305]
 gi|324967601|gb|ADY58379.1| NusB antitermination factor [Planctomyces brasiliensis DSM 5305]
          Length = 137

 Score =  135 bits (341), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 33/147 (22%), Positives = 63/147 (42%), Gaps = 13/147 (8%)

Query: 14  HRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVII 73
            +R  AR  A+Q L+ +D+      + +      R   + +             +   + 
Sbjct: 2   AKRSKARELAMQMLFLVDMNPDIDGKTVLHMIQDRLEDEQQ-----------SRFAWTLF 50

Query: 74  HGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCI 133
            G M+ ++ ID  IS  + + W+  R+ +   ++LR G  EL      P  V+I E + +
Sbjct: 51  AGTMEHRETIDDRISK-VAKNWTLKRMAVTDRNLLRLGCFELDYH-DTPHTVVIDEIIEL 108

Query: 134 AHDFFYGDEPKFINAVLDKVSRKEEIK 160
           A  F   +   F+N +LDK++ +   K
Sbjct: 109 AKKFGAENSSSFVNGILDKLAGQSHKK 135


>gi|229019401|ref|ZP_04176224.1| N utilization substance protein B [Bacillus cereus AH1273]
 gi|229025645|ref|ZP_04182051.1| N utilization substance protein B [Bacillus cereus AH1272]
 gi|229098654|ref|ZP_04229594.1| N utilization substance protein B [Bacillus cereus Rock3-29]
 gi|229104810|ref|ZP_04235471.1| N utilization substance protein B [Bacillus cereus Rock3-28]
 gi|229117679|ref|ZP_04247049.1| N utilization substance protein B [Bacillus cereus Rock1-3]
 gi|228665771|gb|EEL21243.1| N utilization substance protein B [Bacillus cereus Rock1-3]
 gi|228678683|gb|EEL32899.1| N utilization substance protein B [Bacillus cereus Rock3-28]
 gi|228684733|gb|EEL38671.1| N utilization substance protein B [Bacillus cereus Rock3-29]
 gi|228735643|gb|EEL86232.1| N utilization substance protein B [Bacillus cereus AH1272]
 gi|228741871|gb|EEL92048.1| N utilization substance protein B [Bacillus cereus AH1273]
          Length = 120

 Score =  135 bits (341), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 38/130 (29%), Positives = 58/130 (44%), Gaps = 14/130 (10%)

Query: 24  VQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHI 83
           +QALYQ+DI G    ++  E          E             +   ++ G +D K+ I
Sbjct: 1   MQALYQMDITGELEPKVAVENTLDEGEETNE-------------FLESLVVGFVDNKEEI 47

Query: 84  DLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEP 143
           D  I   L +KW   R+ ++  SILR  V E+     +P  V I+E + IA  F   +  
Sbjct: 48  DAAIRQNL-KKWKLERISIVDRSILRVAVYEMKYMEEIPHNVTINEAIEIAKTFGDEESR 106

Query: 144 KFINAVLDKV 153
           +FIN VL  +
Sbjct: 107 RFINGVLSNI 116


>gi|307720293|ref|YP_003891433.1| NusB antitermination factor [Sulfurimonas autotrophica DSM 16294]
 gi|306978386|gb|ADN08421.1| NusB antitermination factor [Sulfurimonas autotrophica DSM 16294]
          Length = 135

 Score =  135 bits (341), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 43/145 (29%), Positives = 65/145 (44%), Gaps = 13/145 (8%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           R  AR+A V  LY  D+   +T+E  +E    +   + + D           +   +  G
Sbjct: 4   RQQARMAVVSLLYAYDLGNGNTSEHSNEILEEKKIRNKQKD-----------FALGLYEG 52

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
           VM+  + ID  I   L E W F RL  I  + LR    E++    +   V+I+E V I  
Sbjct: 53  VMEHIEEIDKAIVEHLKE-WDFERLGAIERATLRLATYEILFG-ELDSAVVINEAVEITK 110

Query: 136 DFFYGDEPKFINAVLDKVSRKEEIK 160
            F     PKFIN VLD +++  + K
Sbjct: 111 SFGTEQSPKFINGVLDAIAKDHKAK 135


>gi|42522647|ref|NP_968027.1| transcription termination factor nusB [Bdellovibrio bacteriovorus
           HD100]
 gi|81617954|sp|Q6MNX9|NUSB_BDEBA RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|39575179|emb|CAE79020.1| transcription termination factor nusB [Bdellovibrio bacteriovorus
           HD100]
          Length = 135

 Score =  135 bits (341), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 41/147 (27%), Positives = 67/147 (45%), Gaps = 15/147 (10%)

Query: 10  LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF 69
           +KL+ RR  AR  A+Q L+Q +     +      Y+T+    +  LD E       + + 
Sbjct: 1   MKLTARR-QARELALQVLFQTEFAPQIS------YQTFLEVFEQSLDPEV------ITYA 47

Query: 70  RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHS-VPVEVIIS 128
            +I+ GV   K+ ID  I    +  W   R+  I  +ILR  V E+      +   + I+
Sbjct: 48  DLIVTGVKSNKEAIDSKI-QASSAHWKVERMATIDRNILRIAVYEMRFAADPIKENIAIN 106

Query: 129 EYVCIAHDFFYGDEPKFINAVLDKVSR 155
           E V IA  +   D   F+N +LD+V +
Sbjct: 107 EAVEIAKKYGTSDSGSFVNGLLDQVGK 133


>gi|226953323|ref|ZP_03823787.1| transcription antitermination protein NusB [Acinetobacter sp. ATCC
           27244]
 gi|262373826|ref|ZP_06067104.1| transcription antitermination factor NusB [Acinetobacter junii
           SH205]
 gi|226835949|gb|EEH68332.1| transcription antitermination protein NusB [Acinetobacter sp. ATCC
           27244]
 gi|262311579|gb|EEY92665.1| transcription antitermination factor NusB [Acinetobacter junii
           SH205]
          Length = 149

 Score =  135 bits (341), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 38/135 (28%), Positives = 63/135 (46%), Gaps = 13/135 (9%)

Query: 22  AAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQ 81
            AVQ +Y+  +      EI +              VE+    VDL ++  ++  V+ + +
Sbjct: 18  FAVQGIYEWQMSQNPVHEIEA-----------RTRVENAMHKVDLNYYHELLTQVVAQHE 66

Query: 82  HIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGD 141
            +D L+   L  +   S LD +  + LR G  EL +   VP  V++ E + +A  F   D
Sbjct: 67  ALDELLIPVLDRE--LSALDGVELATLRLGAYELRDHLEVPYRVVLDEAIELAKHFGGAD 124

Query: 142 EPKFINAVLDKVSRK 156
             K+IN VLD++S K
Sbjct: 125 SHKYINGVLDRLSSK 139


>gi|320160865|ref|YP_004174089.1| antitermination protein NusB [Anaerolinea thermophila UNI-1]
 gi|319994718|dbj|BAJ63489.1| antitermination protein NusB [Anaerolinea thermophila UNI-1]
          Length = 155

 Score =  135 bits (341), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 39/147 (26%), Positives = 68/147 (46%), Gaps = 13/147 (8%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           R  AR  A++ALY+ID+      +++ E        D   D           + R I+ G
Sbjct: 4   RTRARAVALEALYEIDLTNHLPGDVLEERIKDAKLQDELAD-----------FAREIVMG 52

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
           V+     +D+ I+     +W   ++ +I  +ILR  + E       PV+V I+E V +A 
Sbjct: 53  VLPITHQLDVQIAKH-APEWPLDQVAVIDRNILRIALWEFAVGQCTPVKVAINEAVELAK 111

Query: 136 DFFYGDEPKFINAVLDKVS-RKEEIKR 161
            +      +F+N VL  ++ R+ EIK+
Sbjct: 112 KYGSDSSARFVNGVLGSLADRETEIKQ 138


>gi|225420435|ref|ZP_03762738.1| hypothetical protein CLOSTASPAR_06780 [Clostridium asparagiforme
           DSM 15981]
 gi|225040922|gb|EEG51168.1| hypothetical protein CLOSTASPAR_06780 [Clostridium asparagiforme
           DSM 15981]
          Length = 197

 Score =  135 bits (341), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 38/160 (23%), Positives = 64/160 (40%), Gaps = 9/160 (5%)

Query: 16  RGIARLAAVQALYQIDI--IGCSTTEIISEYETYRFCADTELDVESVYLH------VDLE 67
           R   R    + L+  D         E + +Y       D +   +   LH       D  
Sbjct: 3   RRELREHCFKMLFSADFYPSAEEVKEQLKQYFNAPEEDDVDPKGDVTILHKVEIKEEDSR 62

Query: 68  WFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVII 127
           +    + G+MD+   ID  I+  +   W   R+  +  +ILR  + E+    S+P +V I
Sbjct: 63  YLEKRVAGIMDKIPEIDGQINE-VAAGWRTKRMGKVELTILRLALFEMKYDDSIPEKVAI 121

Query: 128 SEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRSGCVSA 167
           +E V +A  F   + P F+N +L K + K   +  G   A
Sbjct: 122 NEAVELAKKFGGDESPSFVNGILAKFAGKAAGRTGGEAEA 161


>gi|317405459|gb|EFV85770.1| N utilization substance protein B [Achromobacter xylosoxidans C54]
          Length = 163

 Score =  135 bits (341), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 38/141 (26%), Positives = 63/141 (44%), Gaps = 12/141 (8%)

Query: 24  VQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHI 83
           +Q +Y   + G   T+   E + +       L     +   D +WF+ ++HGV+     +
Sbjct: 32  LQGVYAWLLRGGEGTQDAGEIDAH-------LRDTEEFSEADAQWFKTLLHGVLREAPAL 84

Query: 84  DLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEP 143
               +  +      + L  +   IL  G  ELI    VP +V I+E V +A  F   D  
Sbjct: 85  RERFTPYVDR--PLAELSPVEHGILLIGSFELIHHVEVPYKVAINEAVELAKSFGGTDGF 142

Query: 144 KFINAVLDKVS---RKEEIKR 161
           KF+N VLDK++   R  E+K+
Sbjct: 143 KFVNGVLDKLAADVRSHEMKK 163


>gi|324992055|gb|EGC23977.1| N utilization substance protein B [Streptococcus sanguinis SK405]
 gi|324994148|gb|EGC26062.1| N utilization substance protein B [Streptococcus sanguinis SK678]
 gi|327459357|gb|EGF05703.1| N utilization substance protein B [Streptococcus sanguinis SK1]
 gi|327490573|gb|EGF22354.1| N utilization substance protein B [Streptococcus sanguinis SK1058]
          Length = 143

 Score =  135 bits (341), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 34/138 (24%), Positives = 61/138 (44%), Gaps = 6/138 (4%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           R   R  A QAL  ++  G      + E   + +  D + + +         +   ++ G
Sbjct: 9   RRGLRQRAFQALMSLEYEGD-----LVEACRFAYSYDKDEEADKAAEADIPAFLLNLVSG 63

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
           V+  K  +D  I+  L + W+  RL ++  +ILR G+ E+ E    P  V ++E + ++ 
Sbjct: 64  VVQSKDDLDKKIAQHLKKGWTVDRLTLVEKNILRLGIFEITEF-DTPQLVAVNEAIELSK 122

Query: 136 DFFYGDEPKFINAVLDKV 153
            F      KFIN +L K 
Sbjct: 123 QFSDEKSSKFINGILSKF 140


>gi|306825791|ref|ZP_07459130.1| transcription antitermination factor NusB [Streptococcus sp. oral
           taxon 071 str. 73H25AP]
 gi|304432152|gb|EFM35129.1| transcription antitermination factor NusB [Streptococcus sp. oral
           taxon 071 str. 73H25AP]
          Length = 140

 Score =  135 bits (341), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 35/143 (24%), Positives = 62/143 (43%), Gaps = 11/143 (7%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           R   R  A QAL  ++  G             RF    + +   V L     +   ++ G
Sbjct: 9   RRELRKCAFQALMSLEF-GTDVET------ACRFAYTHDREDTDVQLPA---FLTGLVSG 58

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
           V  +K+ +D  I+  L   W+  RL ++  ++LR GV E+      P  V ++E + +A 
Sbjct: 59  VQAKKEELDKQITQHLKAGWTIERLTLVERNLLRLGVFEITSF-DTPQLVAVNEAIELAK 117

Query: 136 DFFYGDEPKFINAVLDKVSRKEE 158
           +F      +FIN +L +   +E+
Sbjct: 118 NFSDQKSARFINGLLSQFVTEEQ 140


>gi|322373691|ref|ZP_08048227.1| transcription antitermination factor NusB [Streptococcus sp. C150]
 gi|321278733|gb|EFX55802.1| transcription antitermination factor NusB [Streptococcus sp. C150]
          Length = 144

 Score =  135 bits (341), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 38/140 (27%), Positives = 58/140 (41%), Gaps = 9/140 (6%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYE-TYRFCADTELDVESVYLHVDLEWFRVIIH 74
           R   R  A Q L+ ++  G    +    Y        +TE+DV          +   ++ 
Sbjct: 9   RRDLRERAFQTLFALEFGGEVLEQAHFAYTFDKPIGEETEVDVP--------AFLLSLVT 60

Query: 75  GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134
           GV +    +D  I   L E WS SRL +   ++LR G+ E+      P  V I+E + IA
Sbjct: 61  GVREELAQLDSQIEEKLKEGWSLSRLIVTDRTLLRLGLYEITSFEETPGRVAINEIIEIA 120

Query: 135 HDFFYGDEPKFINAVLDKVS 154
             +      KFIN VL +  
Sbjct: 121 KKYSDETSAKFINGVLSQFV 140


>gi|228941343|ref|ZP_04103895.1| N utilization substance protein B [Bacillus thuringiensis serovar
           berliner ATCC 10792]
 gi|228954468|ref|ZP_04116493.1| N utilization substance protein B [Bacillus thuringiensis serovar
           kurstaki str. T03a001]
 gi|228960450|ref|ZP_04122101.1| N utilization substance protein B [Bacillus thuringiensis serovar
           pakistani str. T13001]
 gi|228980868|ref|ZP_04141172.1| N utilization substance protein B [Bacillus thuringiensis Bt407]
 gi|229047878|ref|ZP_04193454.1| N utilization substance protein B [Bacillus cereus AH676]
 gi|229071689|ref|ZP_04204905.1| N utilization substance protein B [Bacillus cereus F65185]
 gi|229081441|ref|ZP_04213941.1| N utilization substance protein B [Bacillus cereus Rock4-2]
 gi|229111657|ref|ZP_04241207.1| N utilization substance protein B [Bacillus cereus Rock1-15]
 gi|229129462|ref|ZP_04258433.1| N utilization substance protein B [Bacillus cereus BDRD-Cer4]
 gi|229146757|ref|ZP_04275122.1| N utilization substance protein B [Bacillus cereus BDRD-ST24]
 gi|229152384|ref|ZP_04280576.1| N utilization substance protein B [Bacillus cereus m1550]
 gi|229163128|ref|ZP_04291084.1| N utilization substance protein B [Bacillus cereus R309803]
 gi|229180462|ref|ZP_04307804.1| N utilization substance protein B [Bacillus cereus 172560W]
 gi|229192394|ref|ZP_04319357.1| N utilization substance protein B [Bacillus cereus ATCC 10876]
 gi|228590971|gb|EEK48827.1| N utilization substance protein B [Bacillus cereus ATCC 10876]
 gi|228602886|gb|EEK60365.1| N utilization substance protein B [Bacillus cereus 172560W]
 gi|228620534|gb|EEK77404.1| N utilization substance protein B [Bacillus cereus R309803]
 gi|228630992|gb|EEK87629.1| N utilization substance protein B [Bacillus cereus m1550]
 gi|228636585|gb|EEK93050.1| N utilization substance protein B [Bacillus cereus BDRD-ST24]
 gi|228654067|gb|EEL09934.1| N utilization substance protein B [Bacillus cereus BDRD-Cer4]
 gi|228671792|gb|EEL27086.1| N utilization substance protein B [Bacillus cereus Rock1-15]
 gi|228701856|gb|EEL54342.1| N utilization substance protein B [Bacillus cereus Rock4-2]
 gi|228711420|gb|EEL63379.1| N utilization substance protein B [Bacillus cereus F65185]
 gi|228723335|gb|EEL74704.1| N utilization substance protein B [Bacillus cereus AH676]
 gi|228778804|gb|EEM27067.1| N utilization substance protein B [Bacillus thuringiensis Bt407]
 gi|228799214|gb|EEM46180.1| N utilization substance protein B [Bacillus thuringiensis serovar
           pakistani str. T13001]
 gi|228805125|gb|EEM51719.1| N utilization substance protein B [Bacillus thuringiensis serovar
           kurstaki str. T03a001]
 gi|228818269|gb|EEM64342.1| N utilization substance protein B [Bacillus thuringiensis serovar
           berliner ATCC 10792]
          Length = 120

 Score =  135 bits (341), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 37/130 (28%), Positives = 58/130 (44%), Gaps = 14/130 (10%)

Query: 24  VQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHI 83
           +QALYQ+DI G    ++  E          E             +   ++ G ++ K+ I
Sbjct: 1   MQALYQMDITGELEPKVAVENTLDEGEETNE-------------FLESLVVGFVENKEAI 47

Query: 84  DLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEP 143
           D  I   L +KW   R+ ++  SILR  V E+     +P  V I+E + IA  F   +  
Sbjct: 48  DEAIRQNL-KKWKLERISIVDRSILRVAVYEMKYMEEIPHNVTINEAIEIAKTFGDEESR 106

Query: 144 KFINAVLDKV 153
           +FIN VL  +
Sbjct: 107 RFINGVLSNI 116


>gi|298369791|ref|ZP_06981107.1| transcription antitermination factor NusB [Neisseria sp. oral taxon
           014 str. F0314]
 gi|298281251|gb|EFI22740.1| transcription antitermination factor NusB [Neisseria sp. oral taxon
           014 str. F0314]
          Length = 142

 Score =  135 bits (341), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 39/157 (24%), Positives = 57/157 (36%), Gaps = 18/157 (11%)

Query: 10  LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF 69
           +K   RR  AR  AVQALYQ  +      E               +   + +   D   F
Sbjct: 1   MKTPRRR--ARELAVQALYQAAVNNIPAAEAA-----------KNIREMAEFGKADEGLF 47

Query: 70  RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISE 129
             ++ G  D        I   L        L  I  ++L     EL      P  VII+E
Sbjct: 48  NKLVIGTADNAAAYMQQIRPLLDRDEK--DLSPIERAVLLMACHELSAMPETPYPVIINE 105

Query: 130 YVCIAHDFFYGDEPKFINAVLDKVS---RKEEIKRSG 163
            + +   F   D  KF+N +LD+++   R  + KR  
Sbjct: 106 AIEVTKTFGGTDGHKFVNGILDRLAVQLRPNDPKRGA 142


>gi|150016575|ref|YP_001308829.1| NusB antitermination factor [Clostridium beijerinckii NCIMB 8052]
 gi|189035883|sp|A6LU43|NUSB_CLOB8 RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|149903040|gb|ABR33873.1| NusB antitermination factor [Clostridium beijerinckii NCIMB 8052]
          Length = 133

 Score =  135 bits (341), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 35/142 (24%), Positives = 63/142 (44%), Gaps = 10/142 (7%)

Query: 15  RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74
            R ++R  A++ L+ + +   +  + +  +           + E     +DL + + ++ 
Sbjct: 2   NRKLSREKAMELLFGMTLSKDTMEDAVEAFVE---------NYEGDIKEIDLTYVKQVLI 52

Query: 75  GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134
           GV + K+ ID +I   L   W   R+  +  SILR    EL+    VP  V I+E + I 
Sbjct: 53  GVNNNKEAIDKVIQENL-HNWKIERISKVNLSILRIATYELLYDKEVPRGVAINEALEIT 111

Query: 135 HDFFYGDEPKFINAVLDKVSRK 156
             +       FIN VLDK+ + 
Sbjct: 112 RRYSDEKSVSFINGVLDKIKQD 133


>gi|319639180|ref|ZP_07993931.1| N utilization substance protein B [Neisseria mucosa C102]
 gi|317399364|gb|EFV80034.1| N utilization substance protein B [Neisseria mucosa C102]
          Length = 142

 Score =  135 bits (340), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 41/155 (26%), Positives = 60/155 (38%), Gaps = 16/155 (10%)

Query: 12  LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71
           +   R  AR  AVQA+YQ  I   +  EI                  S   ++D E F  
Sbjct: 1   MKSPRRRARELAVQAIYQAGINKTAAPEIAKNIHEL-----------SQSSNMDEELFNK 49

Query: 72  IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
           +  G     +     IS  L        L  I  ++L     EL      P  VII+E +
Sbjct: 50  LFFGAQTHAEEYMEKISPLLDRDEK--DLSPIERAVLLVACHELSTMPETPYPVIINEAI 107

Query: 132 CIAHDFFYGDEPKFINAVLDKVS---RKEEIKRSG 163
            +   F   D  KF+N +LD+++   R +E +R G
Sbjct: 108 EVTKTFGGTDGHKFVNGILDQLASRIRPDEPRRKG 142


>gi|225854005|ref|YP_002735517.1| transcription antitermination protein NusB [Streptococcus
           pneumoniae JJA]
 gi|254772660|sp|C1CCJ6|NUSB_STRZJ RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|225724174|gb|ACO20027.1| transcription antitermination factor NusB [Streptococcus pneumoniae
           JJA]
          Length = 140

 Score =  135 bits (340), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 36/143 (25%), Positives = 63/143 (44%), Gaps = 11/143 (7%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           R   R  A QAL  ++  G             RF    + +  +V L     +   ++ G
Sbjct: 9   RRQLRKCAFQALMSLEF-GTDVET------ACRFAYTHDREDTAVQLPA---FLIDLVSG 58

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
           V  +K+ +D  I+  L   W+  RL ++  ++LR GV E+      P  V ++E + +A 
Sbjct: 59  VQAKKEELDKQITQHLKAGWTIERLTLVERNLLRLGVFEITSF-DTPQLVAVNEAIELAK 117

Query: 136 DFFYGDEPKFINAVLDKVSRKEE 158
           DF      +FIN +L +   +E+
Sbjct: 118 DFSDQKSARFINGLLSQFVTEEQ 140


>gi|224476635|ref|YP_002634241.1| transcription antitermination protein NusB [Staphylococcus carnosus
           subsp. carnosus TM300]
 gi|254772655|sp|B9DNQ0|NUSB_STACT RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|222421242|emb|CAL28056.1| putative N utilization substance protein NusB [Staphylococcus
           carnosus subsp. carnosus TM300]
          Length = 128

 Score =  135 bits (340), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 40/138 (28%), Positives = 62/138 (44%), Gaps = 13/138 (9%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           R  +R  A QAL+Q+++        +S  E   F  D        Y  ++ ++   ++ G
Sbjct: 3   RKESRSQAFQALFQLEMENTD----LSIDEAINFIKD-------DYPDLEFDFIYWLVSG 51

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
           V D +  +D  I + L + W  SRL      ILR    EL      P +VII+E V +A 
Sbjct: 52  VKDHEPVLDEKIQNNL-KDWKISRLLKTDRIILRMAAFELANS-DTPPKVIINEAVELAK 109

Query: 136 DFFYGDEPKFINAVLDKV 153
            +   D  +FIN VL  +
Sbjct: 110 QYSDDDHYRFINGVLSNL 127


>gi|25028292|ref|NP_738346.1| transcription antitermination protein NusB [Corynebacterium
           efficiens YS-314]
 gi|32171659|sp|Q8FT35|NUSB_COREF RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|23493576|dbj|BAC18546.1| conserved hypothetical protein [Corynebacterium efficiens YS-314]
          Length = 188

 Score =  135 bits (340), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 40/165 (24%), Positives = 69/165 (41%), Gaps = 7/165 (4%)

Query: 3   IQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYL 62
           + ++++  K    R  AR  AV  L++ +        II + +T     D  +   +   
Sbjct: 1   MSESRQGYKRHGARYKARRRAVDILFEAESRDVDPVAIIDDRKTLSNAVDPVVAPVA--- 57

Query: 63  HVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVP 122
               E+   II+GV      ID L+S  + + W   RL  +  ++LR    E++    VP
Sbjct: 58  ----EYTEAIINGVAVELDTIDDLLSEHIADTWLLERLPSVDRAVLRVACWEMLYNPDVP 113

Query: 123 VEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRSGCVSA 167
           V   + E V IA  +       +INA LD ++ K +  R    + 
Sbjct: 114 VTTAVVEAVEIASQYSTDKAGAYINATLDNMASKVDELRERAANP 158


>gi|260553344|ref|ZP_05825958.1| transcription termination factor [Acinetobacter sp. RUH2624]
 gi|260405181|gb|EEW98679.1| transcription termination factor [Acinetobacter sp. RUH2624]
          Length = 149

 Score =  135 bits (340), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 34/133 (25%), Positives = 60/133 (45%), Gaps = 13/133 (9%)

Query: 22  AAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQ 81
            AVQ +Y+  +      EI +               E+    VDL ++  ++  V+ + +
Sbjct: 18  FAVQGIYEWQMSHNPVHEIEA-----------RTRAENAMHKVDLSYYHELLTQVIAQHE 66

Query: 82  HIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGD 141
            +D L+   L  +     LD +  + LR G  EL +   +P  V++ E + +A  F   D
Sbjct: 67  DLDALLIPVLDRE--IDALDGVELATLRLGAYELRDHLEIPYRVVLDEAIELAKHFGGAD 124

Query: 142 EPKFINAVLDKVS 154
             K+IN VLD++S
Sbjct: 125 SHKYINGVLDRLS 137


>gi|15900351|ref|NP_344955.1| transcription antitermination protein NusB [Streptococcus
           pneumoniae TIGR4]
 gi|111657914|ref|ZP_01408625.1| hypothetical protein SpneT_02000923 [Streptococcus pneumoniae
           TIGR4]
 gi|116516227|ref|YP_815903.1| transcription antitermination protein NusB [Streptococcus
           pneumoniae D39]
 gi|148983827|ref|ZP_01817146.1| transcription antitermination factor NusB [Streptococcus pneumoniae
           SP3-BS71]
 gi|148988184|ref|ZP_01819647.1| transcription antitermination factor NusB [Streptococcus pneumoniae
           SP6-BS73]
 gi|148996835|ref|ZP_01824553.1| transcription antitermination factor NusB [Streptococcus pneumoniae
           SP11-BS70]
 gi|149003529|ref|ZP_01828403.1| transcription antitermination factor NusB [Streptococcus pneumoniae
           SP14-BS69]
 gi|149012182|ref|ZP_01833291.1| transcription antitermination factor NusB [Streptococcus pneumoniae
           SP19-BS75]
 gi|149023719|ref|ZP_01836199.1| transcription antitermination factor NusB [Streptococcus pneumoniae
           SP23-BS72]
 gi|168482670|ref|ZP_02707622.1| transcription antitermination factor NusB [Streptococcus pneumoniae
           CDC1873-00]
 gi|168490656|ref|ZP_02714799.1| transcription antitermination factor NusB [Streptococcus pneumoniae
           CDC0288-04]
 gi|168495037|ref|ZP_02719180.1| transcription antitermination factor NusB [Streptococcus pneumoniae
           CDC3059-06]
 gi|169832898|ref|YP_001693937.1| transcription antitermination protein NusB [Streptococcus
           pneumoniae Hungary19A-6]
 gi|194396779|ref|YP_002037111.1| transcription antitermination protein NusB [Streptococcus
           pneumoniae G54]
 gi|221231296|ref|YP_002510448.1| N utilization substance protein B homolog (NusB protein)
           [Streptococcus pneumoniae ATCC 700669]
 gi|225856159|ref|YP_002737670.1| transcription antitermination protein NusB [Streptococcus
           pneumoniae P1031]
 gi|225860454|ref|YP_002741963.1| transcription antitermination protein NusB [Streptococcus
           pneumoniae Taiwan19F-14]
 gi|237650354|ref|ZP_04524606.1| transcription antitermination protein NusB [Streptococcus
           pneumoniae CCRI 1974]
 gi|237822042|ref|ZP_04597887.1| transcription antitermination protein NusB [Streptococcus
           pneumoniae CCRI 1974M2]
 gi|298230814|ref|ZP_06964495.1| transcription antitermination protein NusB [Streptococcus
           pneumoniae str. Canada MDR_19F]
 gi|298254607|ref|ZP_06978193.1| transcription antitermination protein NusB [Streptococcus
           pneumoniae str. Canada MDR_19A]
 gi|298502226|ref|YP_003724166.1| transcription antitermination protein NusB [Streptococcus
           pneumoniae TCH8431/19A]
 gi|307067077|ref|YP_003876043.1| transcription termination factor [Streptococcus pneumoniae AP200]
 gi|54037926|sp|P65583|NUSB_STRR6 RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|54041676|sp|P65582|NUSB_STRPN RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|122279211|sp|Q04M45|NUSB_STRP2 RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|238688321|sp|B1I9M4|NUSB_STRPI RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|238690799|sp|B5E1P3|NUSB_STRP4 RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|254772658|sp|B8ZLJ7|NUSB_STRPJ RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|254772661|sp|C1CIT2|NUSB_STRZP RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|254772662|sp|C1CPU1|NUSB_STRZT RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|14971902|gb|AAK74595.1| N utilization substance protein B [Streptococcus pneumoniae TIGR4]
 gi|116076803|gb|ABJ54523.1| transcription antitermination factor NusB [Streptococcus pneumoniae
           D39]
 gi|147757410|gb|EDK64449.1| transcription antitermination factor NusB [Streptococcus pneumoniae
           SP11-BS70]
 gi|147758465|gb|EDK65464.1| transcription antitermination factor NusB [Streptococcus pneumoniae
           SP14-BS69]
 gi|147763784|gb|EDK70718.1| transcription antitermination factor NusB [Streptococcus pneumoniae
           SP19-BS75]
 gi|147923974|gb|EDK75086.1| transcription antitermination factor NusB [Streptococcus pneumoniae
           SP3-BS71]
 gi|147926648|gb|EDK77721.1| transcription antitermination factor NusB [Streptococcus pneumoniae
           SP6-BS73]
 gi|147929656|gb|EDK80648.1| transcription antitermination factor NusB [Streptococcus pneumoniae
           SP23-BS72]
 gi|168995400|gb|ACA36012.1| transcription antitermination factor NusB [Streptococcus pneumoniae
           Hungary19A-6]
 gi|172043807|gb|EDT51853.1| transcription antitermination factor NusB [Streptococcus pneumoniae
           CDC1873-00]
 gi|183575029|gb|EDT95557.1| transcription antitermination factor NusB [Streptococcus pneumoniae
           CDC0288-04]
 gi|183575089|gb|EDT95617.1| transcription antitermination factor NusB [Streptococcus pneumoniae
           CDC3059-06]
 gi|194356446|gb|ACF54894.1| transcription antitermination factor NusB [Streptococcus pneumoniae
           G54]
 gi|220673756|emb|CAR68255.1| N utilization substance protein B homolog (NusB protein)
           [Streptococcus pneumoniae ATCC 700669]
 gi|225725650|gb|ACO21502.1| transcription antitermination factor NusB [Streptococcus pneumoniae
           P1031]
 gi|225726476|gb|ACO22327.1| transcription antitermination factor NusB [Streptococcus pneumoniae
           Taiwan19F-14]
 gi|298237821|gb|ADI68952.1| transcription antitermination protein NusB [Streptococcus
           pneumoniae TCH8431/19A]
 gi|301799529|emb|CBW32077.1| N utilization substance protein B homolog (NusB protein)
           [Streptococcus pneumoniae OXC141]
 gi|306408614|gb|ADM84041.1| Transcription termination factor [Streptococcus pneumoniae AP200]
 gi|327390840|gb|EGE89180.1| transcription antitermination factor NusB [Streptococcus pneumoniae
           GA04375]
 gi|332202338|gb|EGJ16407.1| transcription antitermination factor NusB [Streptococcus pneumoniae
           GA41317]
 gi|332203602|gb|EGJ17669.1| transcription antitermination factor NusB [Streptococcus pneumoniae
           GA47368]
 gi|332204458|gb|EGJ18523.1| transcription antitermination factor NusB [Streptococcus pneumoniae
           GA47901]
          Length = 140

 Score =  135 bits (340), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 36/143 (25%), Positives = 62/143 (43%), Gaps = 11/143 (7%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           R   R  A QAL  ++  G             RF    + +   V L     +   ++ G
Sbjct: 9   RRQLRKCAFQALMSLEF-GTDVET------ACRFAYTHDREDTDVQLPA---FLIDLVSG 58

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
           V  +K+ +D  I+  L   W+  RL ++  ++LR GV E+      P  V ++E + +A 
Sbjct: 59  VQAKKEELDKQITQHLKAGWTIERLTLVERNLLRLGVFEITSF-DTPQLVAVNEAIELAK 117

Query: 136 DFFYGDEPKFINAVLDKVSRKEE 158
           DF      +FIN +L +   +E+
Sbjct: 118 DFSDQKSARFINGLLSQFVTEEQ 140


>gi|116618710|ref|YP_819081.1| NusB antitermination factor [Leuconostoc mesenteroides subsp.
           mesenteroides ATCC 8293]
 gi|227432118|ref|ZP_03914130.1| transcription antitermination protein NusB [Leuconostoc
           mesenteroides subsp. cremoris ATCC 19254]
 gi|116097557|gb|ABJ62708.1| NusB antitermination factor [Leuconostoc mesenteroides subsp.
           mesenteroides ATCC 8293]
 gi|227352145|gb|EEJ42359.1| transcription antitermination protein NusB [Leuconostoc
           mesenteroides subsp. cremoris ATCC 19254]
          Length = 137

 Score =  135 bits (340), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 39/143 (27%), Positives = 66/143 (46%), Gaps = 13/143 (9%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           R  +R AA Q L+ ++     + +I   YE        +            ++   +++G
Sbjct: 6   RHESRQAAFQVLFALE-KDPQSNKIDDLYEIVLNGKQFD------------DYLPRLVNG 52

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
           V+  K  +D  ISS L E W+ +R++     ILR  + EL    + P +V I E + +A 
Sbjct: 53  VLGSKADLDEKISSHLAEGWAINRINKADLVILRLAIYELTAVEATPYKVAIDEAIELAK 112

Query: 136 DFFYGDEPKFINAVLDKVSRKEE 158
            F   D+ KF+N VL   +R E+
Sbjct: 113 TFADEDDRKFVNGVLKHFARDEK 135


>gi|220912760|ref|YP_002488069.1| NusB antitermination factor [Arthrobacter chlorophenolicus A6]
 gi|254772610|sp|B8H8V2|NUSB_ARTCA RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|219859638|gb|ACL39980.1| NusB antitermination factor [Arthrobacter chlorophenolicus A6]
          Length = 136

 Score =  135 bits (340), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 35/138 (25%), Positives = 61/138 (44%), Gaps = 14/138 (10%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           RG AR  A+  L++ +    S  +++                      +   +   I+ G
Sbjct: 4   RGKARSRALDVLFEAEQRSASAFDVLRARR-------------EKTDQIVNPYTLEIVEG 50

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
           V+ R+Q ID  + +  ++ WS  R+  +   ILR G  EL+    VP  V +SE V +A 
Sbjct: 51  VVSRQQAIDEFLETY-SQGWSLERMPSVDRIILRIGTWELLYNDDVPDGVAVSEAVALAK 109

Query: 136 DFFYGDEPKFINAVLDKV 153
                + P+FIN +L ++
Sbjct: 110 TLSTDESPQFINGLLGRL 127


>gi|149008214|ref|ZP_01831709.1| transcription antitermination protein NusB [Streptococcus
           pneumoniae SP18-BS74]
 gi|307126646|ref|YP_003878677.1| transcription antitermination factor NusB [Streptococcus pneumoniae
           670-6B]
 gi|147760358|gb|EDK67339.1| transcription antitermination protein NusB [Streptococcus
           pneumoniae SP18-BS74]
 gi|306483708|gb|ADM90577.1| transcription antitermination factor NusB [Streptococcus pneumoniae
           670-6B]
 gi|332076876|gb|EGI87338.1| transcription antitermination factor NusB [Streptococcus pneumoniae
           GA17545]
          Length = 140

 Score =  135 bits (340), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 36/143 (25%), Positives = 62/143 (43%), Gaps = 11/143 (7%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           R   R  A QAL  ++  G             RF    + +   V L     +   ++ G
Sbjct: 9   RRQLRKCAFQALMSLEF-GTDVET------ACRFAYTHDREYTDVQLPA---FLIDLVSG 58

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
           V  +K+ +D  I+  L   W+  RL ++  ++LR GV E+      P  V ++E + +A 
Sbjct: 59  VQAKKEELDKQITQHLKAGWTIERLTLVERNLLRLGVFEITSF-DTPQLVAVNEAIELAK 117

Query: 136 DFFYGDEPKFINAVLDKVSRKEE 158
           DF      +FIN +L +   +E+
Sbjct: 118 DFSDQKSARFINGLLSQFVTEEQ 140


>gi|157828080|ref|YP_001494322.1| transcription antitermination protein NusB [Rickettsia rickettsii
           str. 'Sheila Smith']
 gi|165932780|ref|YP_001649569.1| transcription antitermination protein NusB [Rickettsia rickettsii
           str. Iowa]
 gi|166215712|sp|A8GQY9|NUSB_RICRS RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|189035898|sp|B0BWD7|NUSB_RICRO RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|157800561|gb|ABV75814.1| transcription antitermination protein NusB [Rickettsia rickettsii
           str. 'Sheila Smith']
 gi|165907867|gb|ABY72163.1| N utilization substance protein B [Rickettsia rickettsii str. Iowa]
          Length = 156

 Score =  135 bits (340), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 41/145 (28%), Positives = 84/145 (57%), Gaps = 2/145 (1%)

Query: 14  HRRGIARLAAVQALYQ-IDIIGCSTTEIISEYETYRFCADTELD-VESVYLHVDLEWFRV 71
           +++ IAR+AAVQA+YQ I        +I+    ++    ++  D  E++ + + +  F++
Sbjct: 7   NKKSIARIAAVQAIYQNILQNNDDMDDIMQNVLSFYQNNNSITDLPENLKISLSISHFKM 66

Query: 72  IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
           ++  V +    +D +I + LT     + + ++L ++LR  + EL+ C + P +V+I+EY 
Sbjct: 67  LVKLVFENIHKLDEIIDNHLTNDKDPAHMPILLRALLRVSICELLFCPTTPAKVVINEYT 126

Query: 132 CIAHDFFYGDEPKFINAVLDKVSRK 156
            IA+D     E  F+N+VLDK++++
Sbjct: 127 DIANDMLNEHEIGFVNSVLDKIAKE 151


>gi|146297126|ref|YP_001180897.1| NusB antitermination factor [Caldicellulosiruptor saccharolyticus
           DSM 8903]
 gi|254772620|sp|A4XLC1|NUSB_CALS8 RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|145410702|gb|ABP67706.1| NusB antitermination factor [Caldicellulosiruptor saccharolyticus
           DSM 8903]
          Length = 142

 Score =  135 bits (340), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 37/148 (25%), Positives = 67/148 (45%), Gaps = 8/148 (5%)

Query: 14  HRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVII 73
           H+R   R   ++ LY           I             EL+ +  +  +D E+ + ++
Sbjct: 2   HKRRKTRELCMKILYAYRFQNNEYDIIE------FLNKFKELNPDENFKEIDEEYLKKLL 55

Query: 74  HGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCI 133
            GV+  +Q ID LI    ++ W  SR+ M+   ++R  + EL+    +P+ V I E V +
Sbjct: 56  TGVIRNQQLIDNLIEKY-SKDWPLSRIPMVELELMRIAIYELLFEEEIPISVAIDEAVDL 114

Query: 134 AHDFFYGDEPKFINAVLDKVSRKEEIKR 161
           +  F     P F+N +L  ++   E+KR
Sbjct: 115 SSIFGVEKAPSFVNGILGSIA-VNEVKR 141


>gi|293376577|ref|ZP_06622805.1| transcription antitermination factor NusB [Turicibacter sanguinis
           PC909]
 gi|325839451|ref|ZP_08166890.1| transcription antitermination factor NusB [Turicibacter sp. HGF1]
 gi|292644803|gb|EFF62885.1| transcription antitermination factor NusB [Turicibacter sanguinis
           PC909]
 gi|325490571|gb|EGC92887.1| transcription antitermination factor NusB [Turicibacter sp. HGF1]
          Length = 159

 Score =  135 bits (340), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 44/155 (28%), Positives = 72/155 (46%), Gaps = 16/155 (10%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYE---TYRFCADTELDVESVYLHVDL------ 66
           R + R  AVQ LYQ+++   +  E I   E           EL  E V  H  L      
Sbjct: 3   RHVIRQFAVQTLYQMEVGQLTREEAIENIELMVESLKEEAIELMAEEVTPHQALQMEQTF 62

Query: 67  ---EWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPV 123
              E++  +++GV+  K+ +D +I+  L   WS SRL+ +  +ILR    E+  C     
Sbjct: 63  KLDEFYFELVNGVLTHKEQLDQIINDNL-RGWSLSRLNKVDKAILRLATYEMKYCQDTAK 121

Query: 124 EVIISEYVCIAHDF---FYGDEPKFINAVLDKVSR 155
           +++I E + +  +F     G    F N VLD++S+
Sbjct: 122 KIVIDEALELTKEFSDTGDGKARSFNNKVLDQISK 156


>gi|327458960|gb|EGF05308.1| N utilization substance protein B [Streptococcus sanguinis SK1057]
          Length = 143

 Score =  135 bits (340), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 33/138 (23%), Positives = 60/138 (43%), Gaps = 6/138 (4%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           R   R  A QAL  ++  G      + E   + +  D +   +         +   ++ G
Sbjct: 9   RRGLRQRAFQALMSLEYEGD-----LVEACRFAYSYDKDEGADKATEADIPAFLLNLVSG 63

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
           V+  K  +D  I+  L + W+  RL ++  +ILR G+ E+ E    P  V ++E + ++ 
Sbjct: 64  VVQSKDDLDKKIAQHLKKGWTVDRLTLVEKNILRLGIFEITEF-DTPQLVAVNEAIELSK 122

Query: 136 DFFYGDEPKFINAVLDKV 153
            F      KFIN +L + 
Sbjct: 123 QFSDEKSSKFINGILSQF 140


>gi|225075389|ref|ZP_03718588.1| hypothetical protein NEIFLAOT_00394 [Neisseria flavescens
           NRL30031/H210]
 gi|224953207|gb|EEG34416.1| hypothetical protein NEIFLAOT_00394 [Neisseria flavescens
           NRL30031/H210]
          Length = 142

 Score =  135 bits (340), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 41/155 (26%), Positives = 59/155 (38%), Gaps = 16/155 (10%)

Query: 12  LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71
           +   R  AR  AVQA+YQ  I   +  EI                  S   ++D E F  
Sbjct: 1   MKSPRRRARELAVQAIYQAGINKTAAPEIAKNIHEL-----------SQTSNMDEELFNK 49

Query: 72  IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
           +  G           IS  L        L  I  ++L     EL      P  VII+E +
Sbjct: 50  LFFGAQTHAAEYMEKISPLLDRDEK--DLSPIERAVLLVACHELSTMPETPYPVIINEAI 107

Query: 132 CIAHDFFYGDEPKFINAVLDKVS---RKEEIKRSG 163
            +   F   D  KF+N +LD+++   R +E +R G
Sbjct: 108 EVTKTFGGTDGHKFVNGILDQLASRIRPDEPRRKG 142


>gi|255020761|ref|ZP_05292820.1| Transcription termination protein NusB [Acidithiobacillus caldus
           ATCC 51756]
 gi|254969823|gb|EET27326.1| Transcription termination protein NusB [Acidithiobacillus caldus
           ATCC 51756]
          Length = 147

 Score =  135 bits (340), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 41/155 (26%), Positives = 70/155 (45%), Gaps = 15/155 (9%)

Query: 18  IARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVM 77
           +AR A +QALYQ  +      EI  ++          L+ +   +  D  +F  I   + 
Sbjct: 1   MAREALLQALYQWQLNPAPCGEIARQF----------LEDDERLVGADQRFFEDIWGRLC 50

Query: 78  DRKQHIDLLISSC-LTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHD 136
              + +D  I+S  L  +W    +  +  +ILR G  EL E    P  VII+E V ++  
Sbjct: 51  PVMETLDQAIASVILDRRWQ-DEVSEVERAILRLGAFELREERQTPYRVIINEAVELSKA 109

Query: 137 FFYGDEPKFINAVLDKVS---RKEEIKRSGCVSAI 168
           F      +FIN VLD+++   R+ E++     ++ 
Sbjct: 110 FGAEQGHRFINGVLDRLAHQWRQAELENPDGDASP 144


>gi|284032250|ref|YP_003382181.1| NusB antitermination factor [Kribbella flavida DSM 17836]
 gi|283811543|gb|ADB33382.1| NusB antitermination factor [Kribbella flavida DSM 17836]
          Length = 136

 Score =  135 bits (340), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 37/138 (26%), Positives = 65/138 (47%), Gaps = 14/138 (10%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           R  AR  A+  LY+ ++ G      +++       AD +  V         E+   ++ G
Sbjct: 4   RSKARKRALDVLYESEVRGLPVGGTLADR-----VADNDPPVN--------EFTVALVEG 50

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
           V +    ID L+S+  +  W+  R+  +  ++LR GV EL+    VP  V +SE V +A 
Sbjct: 51  VAEHIAAIDDLLSTH-SVGWTLDRMPAVDRNVLRIGVYELLFDEQVPDVVAVSEAVALAR 109

Query: 136 DFFYGDEPKFINAVLDKV 153
           D    + P F+N +L ++
Sbjct: 110 DLSTDESPAFVNGLLARL 127


>gi|229135004|ref|ZP_04263810.1| N utilization substance protein B [Bacillus cereus BDRD-ST196]
 gi|228648506|gb|EEL04535.1| N utilization substance protein B [Bacillus cereus BDRD-ST196]
          Length = 120

 Score =  135 bits (340), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 38/130 (29%), Positives = 58/130 (44%), Gaps = 14/130 (10%)

Query: 24  VQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHI 83
           +QALYQ+DI G    ++  E          E             +   ++ G +D K+ I
Sbjct: 1   MQALYQMDITGELEPKVAVENTLDEGEETNE-------------FLESLVVGFVDNKEEI 47

Query: 84  DLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEP 143
           D  I   L +KW   R+ ++  SILR  V E+     +P  V I+E + IA  F   +  
Sbjct: 48  DAAIRQNL-KKWKLERISIVDRSILRVAVCEMKYMEEIPHNVTINEAIEIAKTFGDEESR 106

Query: 144 KFINAVLDKV 153
           +FIN VL  +
Sbjct: 107 RFINGVLSNI 116


>gi|87200933|ref|YP_498190.1| NusB antitermination factor [Novosphingobium aromaticivorans DSM
           12444]
 gi|119390792|sp|Q2G467|NUSB_NOVAD RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|87136614|gb|ABD27356.1| NusB antitermination factor [Novosphingobium aromaticivorans DSM
           12444]
          Length = 148

 Score =  135 bits (340), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 46/129 (35%), Positives = 71/129 (55%), Gaps = 3/129 (2%)

Query: 28  YQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLI 87
           YQ D+       ++ E+  +R  A+ E   +  Y   D+ +F  ++ GV  R+  ID L+
Sbjct: 21  YQADMEQTPLHLLLDEFHQHRLGAEIE---DVEYAKADVAFFDDVVKGVDARRDEIDGLL 77

Query: 88  SSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFIN 147
           S+ L + W+  RLD  +  ILRAG  EL+    V V  +I+EYV +AH FF   E KF+N
Sbjct: 78  SARLAKGWALPRLDRTMLQILRAGAYELMARRDVNVGTVITEYVDVAHAFFEEREAKFVN 137

Query: 148 AVLDKVSRK 156
            +LD V++ 
Sbjct: 138 GLLDAVAKD 146


>gi|293610510|ref|ZP_06692810.1| conserved hypothetical protein [Acinetobacter sp. SH024]
 gi|292826854|gb|EFF85219.1| conserved hypothetical protein [Acinetobacter sp. SH024]
 gi|325123924|gb|ADY83447.1| transcription termination, L factor (N utilization substance
           protein B) [Acinetobacter calcoaceticus PHEA-2]
          Length = 149

 Score =  134 bits (339), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 36/133 (27%), Positives = 61/133 (45%), Gaps = 13/133 (9%)

Query: 22  AAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQ 81
            AVQ +Y+  +      EI +               E+    VDL ++  ++  V+ + +
Sbjct: 18  FAVQGIYEWQMSHNPVHEIEA-----------RTRAENAMHKVDLNYYHELLTQVIAQHE 66

Query: 82  HIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGD 141
            +D L+   L  +   S LD +  + LR G  EL +   VP  V++ E + +A  F   D
Sbjct: 67  DLDALLIPVLDRE--LSALDGVELATLRLGAYELRDHLEVPYRVVLDEAIELAKHFGGAD 124

Query: 142 EPKFINAVLDKVS 154
             K+IN VLD++S
Sbjct: 125 SHKYINGVLDRLS 137


>gi|125717317|ref|YP_001034450.1| transcription antitermination protein NusB [Streptococcus sanguinis
           SK36]
 gi|125497234|gb|ABN43900.1| Nitrogen utilization substance protein B, putative [Streptococcus
           sanguinis SK36]
          Length = 148

 Score =  134 bits (339), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 33/138 (23%), Positives = 60/138 (43%), Gaps = 6/138 (4%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           R   R  A QAL  ++  G      + E   + +  D +   +         +   ++ G
Sbjct: 14  RRGLRQRAFQALMSLEYEGD-----LVEACRFAYSYDKDEGADKAAEADIPAFLLNLVSG 68

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
           V+  K  +D  I+  L + W+  RL ++  +ILR G+ E+ E    P  V ++E + ++ 
Sbjct: 69  VVQSKDDLDKKIAQHLKKGWTVDRLTLVEKNILRLGIFEITEF-DTPQLVAVNEAIELSK 127

Query: 136 DFFYGDEPKFINAVLDKV 153
            F      KFIN +L + 
Sbjct: 128 QFSDEKSSKFINGILSQF 145


>gi|332364657|gb|EGJ42426.1| N utilization substance protein B [Streptococcus sanguinis SK1059]
          Length = 143

 Score =  134 bits (339), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 33/138 (23%), Positives = 61/138 (44%), Gaps = 6/138 (4%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           R   R  A QAL  ++  G      + E   + +  D + + +         +   ++ G
Sbjct: 9   RRGLRQRAFQALMSLEYEGD-----LVEACRFSYSYDKDEEADKAAEADIPAFLLNLVSG 63

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
           V+  K  +D  I+  L + W+  RL ++  +ILR G+ E+ E    P  V ++E + ++ 
Sbjct: 64  VVQSKDDLDKKIAQHLKKGWTVDRLTLVEKNILRLGIFEITEF-DTPQLVAVNEAIELSK 122

Query: 136 DFFYGDEPKFINAVLDKV 153
            F      KFIN +L + 
Sbjct: 123 QFSDEKSSKFINGILSQF 140


>gi|228987373|ref|ZP_04147493.1| N utilization substance protein B [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
 gi|229140916|ref|ZP_04269460.1| N utilization substance protein B [Bacillus cereus BDRD-ST26]
 gi|229157781|ref|ZP_04285856.1| N utilization substance protein B [Bacillus cereus ATCC 4342]
 gi|229186425|ref|ZP_04313589.1| N utilization substance protein B [Bacillus cereus BGSC 6E1]
 gi|229198309|ref|ZP_04325016.1| N utilization substance protein B [Bacillus cereus m1293]
 gi|228585188|gb|EEK43299.1| N utilization substance protein B [Bacillus cereus m1293]
 gi|228597052|gb|EEK54708.1| N utilization substance protein B [Bacillus cereus BGSC 6E1]
 gi|228625738|gb|EEK82490.1| N utilization substance protein B [Bacillus cereus ATCC 4342]
 gi|228642492|gb|EEK98779.1| N utilization substance protein B [Bacillus cereus BDRD-ST26]
 gi|228772345|gb|EEM20791.1| N utilization substance protein B [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
          Length = 120

 Score =  134 bits (339), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 37/130 (28%), Positives = 58/130 (44%), Gaps = 14/130 (10%)

Query: 24  VQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHI 83
           +QALYQ+DI G    ++  E          E             +   ++ G ++ K+ I
Sbjct: 1   MQALYQMDITGELEPKVAVENTLDEGEETNE-------------FLESLVVGFVENKEVI 47

Query: 84  DLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEP 143
           D  I   L +KW   R+ ++  SILR  V E+     +P  V I+E + IA  F   +  
Sbjct: 48  DEAIRQNL-KKWKLERISIVDRSILRVAVYEMKYMEEIPHNVTINEAIEIAKTFGDEESR 106

Query: 144 KFINAVLDKV 153
           +FIN VL  +
Sbjct: 107 RFINGVLSNI 116


>gi|324990231|gb|EGC22169.1| N utilization substance protein B [Streptococcus sanguinis SK353]
 gi|325688019|gb|EGD30038.1| N utilization substance protein B [Streptococcus sanguinis SK72]
          Length = 143

 Score =  134 bits (339), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 33/138 (23%), Positives = 61/138 (44%), Gaps = 6/138 (4%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           R   R  A QAL  ++  G      + E   + +  D + + +         +   ++ G
Sbjct: 9   RRGLRQRAFQALMSLEYEGD-----LVEACRFAYSYDKDEETDKAAEADIPAFLLNLVSG 63

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
           V+  K  +D  I+  L + W+  RL ++  +ILR G+ E+ E    P  V ++E + ++ 
Sbjct: 64  VVQSKDDLDKKIAQHLKKGWTVDRLTLVEKNILRLGIFEITEF-DTPQLVAVNEAIELSK 122

Query: 136 DFFYGDEPKFINAVLDKV 153
            F      KFIN +L + 
Sbjct: 123 QFSDEKSSKFINGILSQF 140


>gi|313681443|ref|YP_004059181.1| nusb antitermination factor [Sulfuricurvum kujiense DSM 16994]
 gi|313154303|gb|ADR32981.1| NusB antitermination factor [Sulfuricurvum kujiense DSM 16994]
          Length = 132

 Score =  134 bits (339), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 40/142 (28%), Positives = 61/142 (42%), Gaps = 13/142 (9%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           R  AR+A V  LY  D+   +  +   E    +   + + D           +   +  G
Sbjct: 4   RHQARMAVVSLLYAYDLGNQTIADFSDEILEEKKIRNKQRD-----------FALDLFKG 52

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
           V +    ID  I   L + W F RL  I  + LR G  E++    +   VII+E + +A 
Sbjct: 53  VTEHLSEIDEAIVKHL-KDWDFDRLGSIERATLRLGGYEIMFG-ELDSAVIINEAIEVAK 110

Query: 136 DFFYGDEPKFINAVLDKVSRKE 157
            F     PKFIN VLD +S+ +
Sbjct: 111 AFGSEQSPKFINGVLDAISKDK 132


>gi|328945778|gb|EGG39929.1| N utilization substance protein B [Streptococcus sanguinis SK1087]
          Length = 143

 Score =  134 bits (339), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 34/138 (24%), Positives = 62/138 (44%), Gaps = 6/138 (4%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           R   R  A QAL  ++  G      + E   + +  D + + + V       +   ++ G
Sbjct: 9   RRGLRQRAFQALMSLEYEGD-----LVEACRFAYSYDKDEEADKVAEADIPAFLLNLVSG 63

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
           V+  K  +D  I+  L + W+  RL ++  +ILR G+ E+ E    P  V ++E + ++ 
Sbjct: 64  VVQSKDDLDKKIAQHLKKGWTVDRLTLVEKNILRLGIFEITEF-DTPQLVAVNEAIELSK 122

Query: 136 DFFYGDEPKFINAVLDKV 153
            F      KFIN +L + 
Sbjct: 123 QFSDEKSSKFINGILSQF 140


>gi|149194728|ref|ZP_01871823.1| N utilization substance protein B [Caminibacter mediatlanticus
           TB-2]
 gi|149135151|gb|EDM23632.1| N utilization substance protein B [Caminibacter mediatlanticus
           TB-2]
          Length = 136

 Score =  134 bits (339), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 42/145 (28%), Positives = 71/145 (48%), Gaps = 13/145 (8%)

Query: 17  GIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGV 76
             AR A +Q LY  ++      + I++++        EL  E        E+ + +++GV
Sbjct: 5   THAREAVIQTLYAKELGN---DDAINQFD--------ELLKERKIKGQKAEFAKKLLNGV 53

Query: 77  MDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHD 136
           ++    ID +I + L   WSF RLD +   ILR G+ E+      P +++I E V IA +
Sbjct: 54  LEHINEIDEIIKNHLI-DWSFDRLDKVDKQILRTGIYEIKYT-DTPYQIVIDEAVKIAKN 111

Query: 137 FFYGDEPKFINAVLDKVSRKEEIKR 161
           F       FIN +LDKV+++    +
Sbjct: 112 FSEDKSKNFINGILDKVAKEVRENK 136


>gi|222151417|ref|YP_002560573.1| transcription termination factor [Macrococcus caseolyticus
           JCSC5402]
 gi|254772646|sp|B9E6Q9|NUSB_MACCJ RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|222120542|dbj|BAH17877.1| transcription termination factor [Macrococcus caseolyticus
           JCSC5402]
          Length = 130

 Score =  134 bits (339), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 41/142 (28%), Positives = 66/142 (46%), Gaps = 15/142 (10%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           R  +R  A+Q L+QI+       EI  E  T         DV          +   ++HG
Sbjct: 3   RTESREHAIQILFQIE---NEAHEISVEDATRFIVEPPNRDV----------FADELVHG 49

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
           V+ ++  +D  I+  L + W+  RL+ I   ILR    EL+     P +VI++E V +A 
Sbjct: 50  VISKQNELDDKITPHL-KSWALERLNKIDRIILRLSAFELLYT-DAPEKVIVNEAVNLAK 107

Query: 136 DFFYGDEPKFINAVLDKVSRKE 157
            F   +  KFIN VL ++ + +
Sbjct: 108 KFSDDESYKFINGVLSEIIKNK 129


>gi|311108723|ref|YP_003981576.1| transcription antitermination factor NusB [Achromobacter
           xylosoxidans A8]
 gi|310763412|gb|ADP18861.1| transcription antitermination factor NusB [Achromobacter
           xylosoxidans A8]
          Length = 164

 Score =  134 bits (339), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 37/141 (26%), Positives = 62/141 (43%), Gaps = 12/141 (8%)

Query: 24  VQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHI 83
           +Q +Y   + G   T+   E + +       L     +   D +WF+ ++HGV+     +
Sbjct: 32  LQGVYAWLLRGGEGTQDAGEIDAH-------LRDTEDFSEADAQWFKTLLHGVLREAPAL 84

Query: 84  DLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEP 143
               +  +      + L  +   IL  G  ELI    VP +V I+E V +A  F   D  
Sbjct: 85  RQRFTPYVDR--PLAELSPVEHGILLIGSFELIHHVEVPYKVAINEAVELAKSFGGTDGF 142

Query: 144 KFINAVLDKVS---RKEEIKR 161
           KF+N VLDK++   R  E+ +
Sbjct: 143 KFVNGVLDKLAADVRANEVNK 163


>gi|94264516|ref|ZP_01288303.1| NusB antitermination factor [delta proteobacterium MLMS-1]
 gi|94265524|ref|ZP_01289272.1| NusB antitermination factor [delta proteobacterium MLMS-1]
 gi|93453965|gb|EAT04311.1| NusB antitermination factor [delta proteobacterium MLMS-1]
 gi|93455075|gb|EAT05302.1| NusB antitermination factor [delta proteobacterium MLMS-1]
          Length = 135

 Score =  134 bits (339), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 37/138 (26%), Positives = 58/138 (42%), Gaps = 12/138 (8%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           R  AR  A+QALYQ +++G    + +        C + E    +      L + R ++ G
Sbjct: 6   RRKARELALQALYQGEMLGVGALDTLP-----SLCENFEASRRA------LPYARELLAG 54

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
           +    + I           W   R+  I  +++R  V E+     VP  V I E V +A 
Sbjct: 55  IEAHGEAI-DAAIDAAAANWRLDRMSYIDRNLMRIAVYEMRWRDEVPAGVAIDEAVELAK 113

Query: 136 DFFYGDEPKFINAVLDKV 153
            +   D P FIN +LD V
Sbjct: 114 RYGADDSPAFINGILDAV 131


>gi|332357987|gb|EGJ35820.1| N utilization substance protein B [Streptococcus sanguinis SK1056]
          Length = 143

 Score =  134 bits (339), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 33/138 (23%), Positives = 61/138 (44%), Gaps = 6/138 (4%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           R   R  A QAL  ++  G      + E   + +  D + + +         +   ++ G
Sbjct: 9   RRGLRQRAFQALMSLEYEGD-----LVEACRFAYSYDKDEEADKAVEADIPAFLLNLVSG 63

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
           V+  K  +D  I+  L + W+  RL ++  +ILR G+ E+ E    P  V ++E + ++ 
Sbjct: 64  VVQSKDDLDKKIAQHLKKGWTVDRLTLVEKNILRLGIFEITEF-DTPQLVAVNEAIELSK 122

Query: 136 DFFYGDEPKFINAVLDKV 153
            F      KFIN +L + 
Sbjct: 123 QFSDEKSSKFINGILSQF 140


>gi|288549985|ref|ZP_05968867.2| transcription antitermination factor NusB [Enterobacter
           cancerogenus ATCC 35316]
 gi|288316874|gb|EFC55812.1| transcription antitermination factor NusB [Enterobacter
           cancerogenus ATCC 35316]
          Length = 118

 Score =  134 bits (339), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 30/131 (22%), Positives = 57/131 (43%), Gaps = 13/131 (9%)

Query: 32  IIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCL 91
           +      ++  ++ + +   D           VD+ +FR ++ GV     ++D L+   L
Sbjct: 1   MSHNDIADVEYQFLSEQDVKD-----------VDVLYFRELLSGVATNSAYLDGLMKPYL 49

Query: 92  TEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLD 151
           +       L  +  ++LR  + EL +   VP +V I+E + +A  F   D  KF+N VLD
Sbjct: 50  SR--LLEELGQVEKAVLRIALFELSKRDDVPYKVAINEAIELAKTFGAEDSHKFVNGVLD 107

Query: 152 KVSRKEEIKRS 162
           K +      + 
Sbjct: 108 KAAPAIRPHKK 118


>gi|6580774|gb|AAF18280.1| N-utilization substance protein B [Zymomonas mobilis subsp. mobilis
           ZM4]
          Length = 129

 Score =  134 bits (339), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 44/132 (33%), Positives = 69/132 (52%), Gaps = 3/132 (2%)

Query: 32  IIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCL 91
           +       ++ E+  YR  A  E   ++ Y   +  +F  I+ GV  R + ID +IS  L
Sbjct: 1   MEKTPLNILLDEFHQYRLGATIE---DATYTKAEPSFFDDIVRGVGTRCEEIDRVISENL 57

Query: 92  TEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLD 151
           +E+WS  RLD  +  ILRAG  EL+    VP   +ISEY+ +A+ F+   E  F+N +LD
Sbjct: 58  SERWSLDRLDRPMRQILRAGTYELLARPDVPTATVISEYIDVANAFYDRQEKNFVNGLLD 117

Query: 152 KVSRKEEIKRSG 163
            V++K     + 
Sbjct: 118 TVAKKLRSSNNA 129


>gi|56477452|ref|YP_159041.1| transcription antitermination protein NusB [Aromatoleum aromaticum
           EbN1]
 gi|81598767|sp|Q5P3H4|NUSB_AZOSE RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|56313495|emb|CAI08140.1| N utilization substance protein B,transcription termination factor
           [Aromatoleum aromaticum EbN1]
          Length = 145

 Score =  134 bits (339), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 28/139 (20%), Positives = 54/139 (38%), Gaps = 13/139 (9%)

Query: 21  LAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRK 80
             A+Q +YQ  +   S               +  +   S +   D E F  ++ G ++  
Sbjct: 12  EFALQGIYQWLLSANSM-----------LLIEEHVSQVSGFDKADRELFISLLRGTLNNV 60

Query: 81  QHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYG 140
             +    +  +    +   L  +  +IL     EL      P  VII+E + +A  +   
Sbjct: 61  DDLQAEFAPFIHR--AVHELSPVERAILLLATHELKHNLDTPYRVIINEAIELAKSYGGT 118

Query: 141 DEPKFINAVLDKVSRKEEI 159
           D  +F+N VLDK++ +  +
Sbjct: 119 DGHRFVNGVLDKLATQLRV 137


>gi|322390165|ref|ZP_08063697.1| N utilization substance protein B [Streptococcus parasanguinis ATCC
           903]
 gi|321143125|gb|EFX38571.1| N utilization substance protein B [Streptococcus parasanguinis ATCC
           903]
          Length = 143

 Score =  134 bits (339), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 37/142 (26%), Positives = 58/142 (40%), Gaps = 8/142 (5%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           R   R  A QAL  ++  G          E  RF    + D+          +   ++ G
Sbjct: 10  RRDLRERAFQALMALEYDGDIV-------EACRFAYLHDKDLAEDKEVDLPAFLMNLVTG 62

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
           V   K  +D  I   L   W+  RL ++  +ILR G+ E+ E    P  V ++E V +A 
Sbjct: 63  VYQSKDQLDQQIGQHLKTGWTVERLTLVEKNILRLGIYEMTEF-DTPQIVAVNEAVELAK 121

Query: 136 DFFYGDEPKFINAVLDKVSRKE 157
            F      +F+N VL +   +E
Sbjct: 122 AFSDETSSRFVNGVLSQFVTEE 143


>gi|291550246|emb|CBL26508.1| transcription antitermination factor NusB [Ruminococcus torques
           L2-14]
          Length = 139

 Score =  134 bits (339), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 41/143 (28%), Positives = 66/143 (46%), Gaps = 10/143 (6%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           R   R    + L+QI+       E+  + E Y    +   D        D E+ +     
Sbjct: 3   RKELREHIFKMLFQIEFN--DPQEMPEQIEYYFSTLEDAADK-------DKEYIKRKYAA 53

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
           V+++ + ID LI++   + W  +R++ +  SILR  V E+     VPV V I+E V +  
Sbjct: 54  VLEKTEEIDELINAN-AKGWKTTRMNKVDLSILRLAVYEMKWDDEVPVGVAINEAVELTK 112

Query: 136 DFFYGDEPKFINAVLDKVSRKEE 158
            F   + P FIN VL K++R  E
Sbjct: 113 TFSSDEAPSFINGVLGKIARSLE 135


>gi|291300632|ref|YP_003511910.1| NusB antitermination factor [Stackebrandtia nassauensis DSM 44728]
 gi|290569852|gb|ADD42817.1| NusB antitermination factor [Stackebrandtia nassauensis DSM 44728]
          Length = 147

 Score =  134 bits (338), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 40/143 (27%), Positives = 59/143 (41%), Gaps = 8/143 (5%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           R  AR  AV  LY+ +        ++ +          +L V    +    E+   ++ G
Sbjct: 12  RRKARKRAVDVLYEAEQRDEPIRRVLEDRR--------KLAVTDPQMPGIPEYTFELVDG 63

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
           V +    +D +I+ CL   W   R+  +  +ILR    EL     V   V ISE V IA 
Sbjct: 64  VAEYLDEVDDVIARCLHSGWYLDRIAAVDRNILRVAAFELRYREDVDAAVAISEAVKIAE 123

Query: 136 DFFYGDEPKFINAVLDKVSRKEE 158
                D P F+N VL  VS  E+
Sbjct: 124 VLCGEDSPAFVNGVLQSVSELEK 146


>gi|327469227|gb|EGF14699.1| N utilization substance protein B [Streptococcus sanguinis SK330]
 gi|332363805|gb|EGJ41584.1| N utilization substance protein B [Streptococcus sanguinis SK355]
          Length = 143

 Score =  134 bits (338), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 33/138 (23%), Positives = 61/138 (44%), Gaps = 6/138 (4%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           R   R  A QAL  ++  G      + E   + +  D + + +         +   ++ G
Sbjct: 9   RRGLRQRAFQALMSLEYEGD-----LVEACRFAYSYDKDEEADKAAEADIPAFLLNLVSG 63

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
           V+  K  +D  I+  L + W+  RL ++  +ILR G+ E+ E    P  V ++E + ++ 
Sbjct: 64  VVQSKDDLDKKIAQHLKKGWTVDRLTLVEKNILRLGIFEITEF-DTPQLVAVNEAIELSK 122

Query: 136 DFFYGDEPKFINAVLDKV 153
            F      KFIN +L + 
Sbjct: 123 QFSDEKSSKFINGILSQF 140


>gi|169794295|ref|YP_001712088.1| transcription antitermination protein NusB [Acinetobacter baumannii
           AYE]
 gi|184159907|ref|YP_001848246.1| transcription antitermination protein NusB [Acinetobacter baumannii
           ACICU]
 gi|213159130|ref|YP_002321128.1| transcription antitermination factor NusB [Acinetobacter baumannii
           AB0057]
 gi|215481852|ref|YP_002324034.1| transcription antitermination factor NusB [Acinetobacter baumannii
           AB307-0294]
 gi|239502815|ref|ZP_04662125.1| transcription antitermination protein NusB [Acinetobacter baumannii
           AB900]
 gi|260557847|ref|ZP_05830060.1| transcription antitermination factor NusB [Acinetobacter baumannii
           ATCC 19606]
 gi|332850100|ref|ZP_08432487.1| transcription antitermination factor NusB [Acinetobacter baumannii
           6013150]
 gi|332871452|ref|ZP_08439969.1| transcription antitermination factor NusB [Acinetobacter baumannii
           6013113]
 gi|332873342|ref|ZP_08441296.1| transcription antitermination factor NusB [Acinetobacter baumannii
           6014059]
 gi|226737436|sp|B7GUW2|NUSB_ACIB3 RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|226737437|sp|B7I252|NUSB_ACIB5 RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|238685542|sp|A3MA35|NUSB_ACIBT RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|238688080|sp|B0V9X4|NUSB_ACIBY RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|238691018|sp|B2I2B2|NUSB_ACIBC RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|169147222|emb|CAM85081.1| transcription termination, L factor (N utilization substance
           protein B) [Acinetobacter baumannii AYE]
 gi|183211501|gb|ACC58899.1| Transcription termination factor [Acinetobacter baumannii ACICU]
 gi|193078716|gb|ABO13779.2| transcription termination L factor [Acinetobacter baumannii ATCC
           17978]
 gi|213058290|gb|ACJ43192.1| transcription antitermination factor NusB [Acinetobacter baumannii
           AB0057]
 gi|213988308|gb|ACJ58607.1| transcription antitermination factor NusB [Acinetobacter baumannii
           AB307-0294]
 gi|260408638|gb|EEX01943.1| transcription antitermination factor NusB [Acinetobacter baumannii
           ATCC 19606]
 gi|322509823|gb|ADX05277.1| nusB [Acinetobacter baumannii 1656-2]
 gi|323519833|gb|ADX94214.1| transcription antitermination protein NusB [Acinetobacter baumannii
           TCDC-AB0715]
 gi|332730949|gb|EGJ62255.1| transcription antitermination factor NusB [Acinetobacter baumannii
           6013150]
 gi|332731489|gb|EGJ62779.1| transcription antitermination factor NusB [Acinetobacter baumannii
           6013113]
 gi|332738405|gb|EGJ69278.1| transcription antitermination factor NusB [Acinetobacter baumannii
           6014059]
          Length = 149

 Score =  134 bits (338), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 34/133 (25%), Positives = 60/133 (45%), Gaps = 13/133 (9%)

Query: 22  AAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQ 81
            AVQ +Y+  +      EI +               E+    VDL ++  ++  V+ + +
Sbjct: 18  FAVQGIYEWQMSHNPVHEIEA-----------RTRAENAMHKVDLNYYHELLTQVIAQHE 66

Query: 82  HIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGD 141
            +D L+   L  +     LD +  + LR G  EL +   +P  V++ E + +A  F   D
Sbjct: 67  DLDALLIPVLDRE--IDALDGVELATLRLGAYELRDHLEIPYRVVLDEAIELAKHFGGAD 124

Query: 142 EPKFINAVLDKVS 154
             K+IN VLD++S
Sbjct: 125 SHKYINGVLDRLS 137


>gi|169634846|ref|YP_001708582.1| transcription antitermination protein NusB [Acinetobacter baumannii
           SDF]
 gi|238688150|sp|B0VPT9|NUSB_ACIBS RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|169153638|emb|CAP02830.1| transcription termination, L factor (N utilization substance
           protein B) [Acinetobacter baumannii]
          Length = 149

 Score =  134 bits (338), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 34/133 (25%), Positives = 60/133 (45%), Gaps = 13/133 (9%)

Query: 22  AAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQ 81
            AVQ +Y+  +      EI +               E+    VDL ++  ++  V+ + +
Sbjct: 18  FAVQGIYEWQMSHNPVHEIEA-----------RTRAENAMHKVDLNYYHELLTQVIAQHE 66

Query: 82  HIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGD 141
            +D L+   L  +     LD +  + LR G  EL +   +P  V++ E + +A  F   D
Sbjct: 67  DLDALLIPVLDRE--IDALDGVELATLRLGAYELRDHLEIPYRVVLDEAIELAKHFGGAD 124

Query: 142 EPKFINAVLDKVS 154
             K+IN VLD++S
Sbjct: 125 SHKYINGVLDRLS 137


>gi|148993974|ref|ZP_01823344.1| transcription antitermination factor NusB [Streptococcus pneumoniae
           SP9-BS68]
 gi|168488122|ref|ZP_02712321.1| transcription antitermination factor NusB [Streptococcus pneumoniae
           SP195]
 gi|225858284|ref|YP_002739794.1| transcription antitermination protein NusB [Streptococcus
           pneumoniae 70585]
 gi|254772657|sp|C1C5G8|NUSB_STRP7 RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|147927563|gb|EDK78590.1| transcription antitermination factor NusB [Streptococcus pneumoniae
           SP9-BS68]
 gi|183573223|gb|EDT93751.1| transcription antitermination factor NusB [Streptococcus pneumoniae
           SP195]
 gi|225721195|gb|ACO17049.1| transcription antitermination factor NusB [Streptococcus pneumoniae
           70585]
 gi|301793671|emb|CBW36056.1| N utilization substance protein B homolog (NusB protein)
           [Streptococcus pneumoniae INV104]
 gi|332075276|gb|EGI85746.1| transcription antitermination factor NusB [Streptococcus pneumoniae
           GA17570]
          Length = 140

 Score =  134 bits (338), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 36/143 (25%), Positives = 63/143 (44%), Gaps = 11/143 (7%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           R   R  A QAL  ++  G +           RF    + +   V L     +   ++ G
Sbjct: 9   RRQLRKCAFQALMSLEF-GTNVET------ACRFAYTHDREDTDVQLPA---FLIDLVSG 58

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
           V  +K+ +D  I+  L   W+  RL ++  ++LR GV E+      P  V ++E + +A 
Sbjct: 59  VQAKKEELDKQITQHLKVGWTIERLTLVERNLLRLGVFEITSF-DTPQLVAVNEAIELAK 117

Query: 136 DFFYGDEPKFINAVLDKVSRKEE 158
           DF      +FIN +L +   +E+
Sbjct: 118 DFSDQKSARFINGLLSQFVTEEQ 140


>gi|269216070|ref|ZP_06159924.1| transcription antitermination factor NusB [Slackia exigua ATCC
           700122]
 gi|269130329|gb|EEZ61407.1| transcription antitermination factor NusB [Slackia exigua ATCC
           700122]
          Length = 218

 Score =  134 bits (338), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 43/145 (29%), Positives = 72/145 (49%), Gaps = 14/145 (9%)

Query: 20  RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79
           R +A   LYQ +IIG     I+ E          ++  E+       E+ R+++ G    
Sbjct: 13  RRSAASVLYQSEIIGKPVDRILEE---------GDIPEEAGL----NEYGRLLLLGFSAH 59

Query: 80  KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139
           +  ID +IS   +  W+ +R+ M+   +LR  V E+    +VP+ V I+E V IA +F  
Sbjct: 60  RAEIDRIISER-SANWAVNRMPMVDRELLRITVYEMKYVDAVPIPVSINEAVEIAKEFGG 118

Query: 140 GDEPKFINAVLDKVSRKEEIKRSGC 164
            D  +FIN +L +V+R  + + SG 
Sbjct: 119 DDSYRFINGLLGRVARDLDEQASGS 143


>gi|45656304|ref|YP_000390.1| transcription antitermination protein NusB [Leptospira interrogans
           serovar Copenhageni str. Fiocruz L1-130]
 gi|45599538|gb|AAS69027.1| transcription termination factor [Leptospira interrogans serovar
           Copenhageni str. Fiocruz L1-130]
          Length = 126

 Score =  134 bits (338), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 38/138 (27%), Positives = 69/138 (50%), Gaps = 13/138 (9%)

Query: 26  ALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDL 85
           ALYQ+++      E++  ++ Y    + E          + ++   I++GV+  ++ ID 
Sbjct: 2   ALYQLELTQPPLKEVLK-FKWYDKKTEPE----------ERDFAVSIVNGVVKNQEQIDT 50

Query: 86  LISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKF 145
           LI    ++ W FSR+ ++  +ILR  +  L+    VP  V I E V +  +F   +  +F
Sbjct: 51  LIKKY-SKNWDFSRISIVNKAILRLSIYALLYTWEVPKNVTIDEAVELTKEFESEESARF 109

Query: 146 INAVLDKVSRKEEIKRSG 163
           +N VLD + +  EIK  G
Sbjct: 110 VNGVLDAILK-NEIKSDG 126


>gi|261380112|ref|ZP_05984685.1| transcription antitermination factor NusB [Neisseria subflava
           NJ9703]
 gi|284797333|gb|EFC52680.1| transcription antitermination factor NusB [Neisseria subflava
           NJ9703]
          Length = 142

 Score =  134 bits (338), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 41/155 (26%), Positives = 60/155 (38%), Gaps = 16/155 (10%)

Query: 12  LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71
           +   R  AR  AVQA+YQ  I   +  EI                  S   ++D E F  
Sbjct: 1   MKSPRRRARELAVQAIYQAGINKTAAPEIAKNIREL-----------SQAPNMDEELFNK 49

Query: 72  IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
           +  G     +     IS  L        L  I  ++L     EL      P  VII+E +
Sbjct: 50  LFFGAQTHAEEYMEKISPLLDRDEK--DLSPIERAVLLVACHELSTMPETPYPVIINEAI 107

Query: 132 CIAHDFFYGDEPKFINAVLDKVS---RKEEIKRSG 163
            +   F   D  KF+N +LD+++   R +E +R G
Sbjct: 108 EVTKTFGGTDGHKFVNGILDQLASRIRPDEPRRKG 142


>gi|225573684|ref|ZP_03782439.1| hypothetical protein RUMHYD_01880 [Blautia hydrogenotrophica DSM
           10507]
 gi|225038977|gb|EEG49223.1| hypothetical protein RUMHYD_01880 [Blautia hydrogenotrophica DSM
           10507]
          Length = 145

 Score =  134 bits (338), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 36/141 (25%), Positives = 63/141 (44%), Gaps = 10/141 (7%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           R   R    + L+   +   +T E + +  T  F    ELD        D  + +     
Sbjct: 13  RSKIREHIFKLLF---MSQFNTEEEMPQQLTIYFNELEELD------ESDRAYMQEKYEQ 63

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
           V+   + ID L++  L++ W  SR+  +  + LR  V EL     +P +V I+E V +A 
Sbjct: 64  VISHLKEIDELLNQ-LSKGWKTSRMARVDLTALRLSVYELKYEEEIPTKVSINEAVELAK 122

Query: 136 DFFYGDEPKFINAVLDKVSRK 156
            F   D   F+N +L +V+++
Sbjct: 123 RFGGEDSFAFVNGILGRVAKE 143


>gi|15604037|ref|NP_220552.1| transcription antitermination protein NusB [Rickettsia prowazekii
           str. Madrid E]
 gi|3860728|emb|CAA14629.1| N UTILIZATION SUBSTANCE PROTEIN B (nusB) [Rickettsia prowazekii]
          Length = 174

 Score =  134 bits (338), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 39/146 (26%), Positives = 79/146 (54%), Gaps = 1/146 (0%)

Query: 14  HRRGIARLAAVQALYQ-IDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVI 72
           +++ IAR+AAVQALYQ I        +I+          ++    ++  + + +  F+++
Sbjct: 26  NKKSIARIAAVQALYQNILQNNYDMYDIMQNILACYHSNNSIDLPKNFKISLSISHFKML 85

Query: 73  IHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVC 132
           +  V +    +D +I + LT       + ++L ++LR  + EL+ C + P +V+I+EY  
Sbjct: 86  VKSVFENINKLDEIIDNHLTNAKDSVHMPILLRALLRVSICELLFCSTTPAKVVINEYTD 145

Query: 133 IAHDFFYGDEPKFINAVLDKVSRKEE 158
           IA+D     E  F+N++LDK++++  
Sbjct: 146 IANDLLNEHEIGFVNSILDKIAQENN 171


>gi|325690389|gb|EGD32393.1| N utilization substance protein B [Streptococcus sanguinis SK115]
          Length = 143

 Score =  134 bits (338), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 33/138 (23%), Positives = 60/138 (43%), Gaps = 6/138 (4%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           R   R  A QAL  ++  G      + E   + +  D + +           +   ++ G
Sbjct: 9   RRGLRQRAFQALMSLEYEGD-----LVEACRFAYSYDKDEEACKAAEADIPAFLLNLVSG 63

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
           V+  K  +D  I+  L + W+  RL ++  +ILR G+ E+ E    P  V ++E + ++ 
Sbjct: 64  VVQSKDDLDKKIAQHLKKGWTVDRLTLVEKNILRLGIFEITEF-DTPQLVAVNEAIELSK 122

Query: 136 DFFYGDEPKFINAVLDKV 153
            F      KFIN +L + 
Sbjct: 123 QFSDEKSSKFINGILSQF 140


>gi|119896608|ref|YP_931821.1| transcription antitermination protein NusB [Azoarcus sp. BH72]
 gi|166215662|sp|A1K279|NUSB_AZOSB RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|119669021|emb|CAL92934.1| putative N utilization substance protein B [Azoarcus sp. BH72]
          Length = 155

 Score =  134 bits (338), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 33/134 (24%), Positives = 56/134 (41%), Gaps = 12/134 (8%)

Query: 21  LAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRK 80
             A+Q +YQ  + G S   + +  E             + +  VD E F +++ G +D  
Sbjct: 12  ELALQGVYQWLLSGNSPQVVEAHVEA----------EAADFDKVDRELFVMLLRGTLDNV 61

Query: 81  QHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYG 140
             +    S  +        L  I  +IL  G  EL      P  V+I+E + +A  +   
Sbjct: 62  GALQDEFSPFIHR--PIEELSPIERAILLLGTHELKHNIETPYRVVINEAIELAKAYGGT 119

Query: 141 DEPKFINAVLDKVS 154
           D  +F+N VLDK++
Sbjct: 120 DGHRFVNGVLDKLA 133


>gi|327330421|gb|EGE72170.1| n utilization substance protein B-like protein [Propionibacterium
           acnes HL097PA1]
          Length = 261

 Score =  134 bits (337), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 31/138 (22%), Positives = 63/138 (45%), Gaps = 14/138 (10%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           R  AR  A+  L++ D+IG    E+++                 V+ +    +   ++ G
Sbjct: 39  RSKARKQALDILFEADLIGTDPLEVLAAR-------------PGVFTNPVRPFAADLVRG 85

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
           V   +  +D +++ CL+E W+ +R+  +   + R G  E++     P   +ISE + ++ 
Sbjct: 86  VAATQVGLDSVLTDCLSEGWTLARMPRVDRILARLGAFEILHT-DTPNPAVISEAIELSE 144

Query: 136 DFFYGDEPKFINAVLDKV 153
           +F   D   F+N +L  V
Sbjct: 145 EFSTDDSAPFLNGLLGAV 162


>gi|72161498|ref|YP_289155.1| transcription antitermination protein NusB [Thermobifida fusca YX]
 gi|119390842|sp|Q47QY5|NUSB_THEFY RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|71915230|gb|AAZ55132.1| NusB antitermination factor [Thermobifida fusca YX]
          Length = 142

 Score =  134 bits (337), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 39/147 (26%), Positives = 70/147 (47%), Gaps = 14/147 (9%)

Query: 11  KLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFR 70
           +    R  AR+ AV+ LY+ ++ G   +E+I      R  A TE  +         E+  
Sbjct: 5   RRRGSRHKARVRAVEILYEAEVRGVPVSEVIE-----RRRAQTEPPIN--------EFTE 51

Query: 71  VIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEY 130
            +   V + +  ID L+ +     W+  R+ ++  +ILR GV EL+    +P  V I+E 
Sbjct: 52  QLATRVDEHRARIDELLETY-AIGWTLDRMPVVDRNILRIGVYELLWADDIPDGVAIAEA 110

Query: 131 VCIAHDFFYGDEPKFINAVLDKVSRKE 157
           V +A +    + P F+N +L ++  K+
Sbjct: 111 VAMAKELSTDESPVFVNGLLSRLMEKK 137


>gi|213691632|ref|YP_002322218.1| NusB antitermination factor [Bifidobacterium longum subsp. infantis
           ATCC 15697]
 gi|254772616|sp|B7GPW0|NUSB_BIFLI RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|213523093|gb|ACJ51840.1| NusB antitermination factor [Bifidobacterium longum subsp. infantis
           ATCC 15697]
 gi|320457719|dbj|BAJ68340.1| transcription antitermination factor NusB [Bifidobacterium longum
           subsp. infantis ATCC 15697]
          Length = 187

 Score =  134 bits (337), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 32/138 (23%), Positives = 56/138 (40%), Gaps = 12/138 (8%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           R  AR  A+  LY+ D        ++ E   +        D           +   I+ G
Sbjct: 3   RSTARKRALNTLYEADEKNQDILSLLDERIAHPGAQTPLPD-----------YAIEIVKG 51

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
           V + ++ ID+ +    +  W   R+ ++  +ILR    E++    VP +V I E + +A 
Sbjct: 52  VAEHRRQIDMTLDEH-STGWKVRRMGVVDRNILRIAAWEILFNDDVPDKVAIDEALALAK 110

Query: 136 DFFYGDEPKFINAVLDKV 153
                D P FI+ +L  V
Sbjct: 111 TLCDDDSPAFIHGLLSAV 128


>gi|328956982|ref|YP_004374368.1| transcription antitermination protein NusB [Carnobacterium sp.
           17-4]
 gi|328673306|gb|AEB29352.1| transcription antitermination protein NusB [Carnobacterium sp.
           17-4]
          Length = 147

 Score =  134 bits (337), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 37/146 (25%), Positives = 67/146 (45%), Gaps = 5/146 (3%)

Query: 12  LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71
           +S  R   R  A+Q+L+Q+      + E   E       ++ EL  E   + V   +  +
Sbjct: 1   MSLTRRDIREKALQSLFQLSANEELSKE---EAMQQALTSEAELADEVETVLV-PSYLDL 56

Query: 72  IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
           ++ GV++++  ID  I + L E WS +RL      I+R  + E++    VP  V ++E +
Sbjct: 57  LVSGVLEKQDEIDEKIKAHL-ENWSLNRLAKTDLMIIRIAIFEMMYVSDVPDRVALNEAL 115

Query: 132 CIAHDFFYGDEPKFINAVLDKVSRKE 157
            I   +      KF+N VL  +  + 
Sbjct: 116 EITKKYSDEKSRKFVNGVLANIVNEN 141


>gi|293392569|ref|ZP_06636889.1| transcription termination/antitermination factor NusB [Serratia
           odorifera DSM 4582]
 gi|291424971|gb|EFE98180.1| transcription termination/antitermination factor NusB [Serratia
           odorifera DSM 4582]
          Length = 117

 Score =  134 bits (337), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 32/130 (24%), Positives = 57/130 (43%), Gaps = 13/130 (10%)

Query: 32  IIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCL 91
           +      ++  ++ T           E     VD+ +FR ++ GV      +D L++  L
Sbjct: 1   MSKNDIADVELQFLT-----------EQDVKDVDIAYFRELLSGVAVNAGTLDALMAPYL 49

Query: 92  TEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLD 151
           + +     L  +  ++LR  + EL     VP +V I+E + +A  F   D  KF+N VLD
Sbjct: 50  SRQ--LEELGQVEKAVLRIALFELKMREDVPYKVAINEAIELAKTFGAEDSHKFVNGVLD 107

Query: 152 KVSRKEEIKR 161
           K +     K+
Sbjct: 108 KAAPSIRKKK 117


>gi|323353378|ref|ZP_08087911.1| N utilization substance protein B [Streptococcus sanguinis VMC66]
 gi|322121324|gb|EFX93087.1| N utilization substance protein B [Streptococcus sanguinis VMC66]
 gi|327472778|gb|EGF18205.1| N utilization substance protein B [Streptococcus sanguinis SK408]
          Length = 143

 Score =  134 bits (337), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 33/138 (23%), Positives = 61/138 (44%), Gaps = 6/138 (4%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           R   R  A QAL  ++  G      + E   + +  D + + +         +   ++ G
Sbjct: 9   RRGLRQRAFQALMSLEYEGE-----LVEACRFAYSYDKDEEADKAAEADIPAFLLNLVSG 63

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
           V+  K  +D  I+  L + W+  RL ++  +ILR G+ E+ E    P  V ++E + ++ 
Sbjct: 64  VVQSKDDLDKKIAQHLKKGWTVDRLTLVEKNILRLGIFEITEF-DTPQLVAVNEAIELSK 122

Query: 136 DFFYGDEPKFINAVLDKV 153
            F      KFIN +L + 
Sbjct: 123 QFSDEKSSKFINGILSQF 140


>gi|315108679|gb|EFT80655.1| transcription antitermination factor NusB [Propionibacterium acnes
           HL030PA2]
          Length = 261

 Score =  134 bits (337), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 32/138 (23%), Positives = 64/138 (46%), Gaps = 14/138 (10%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           R  AR  A+  L++ D+IG    E+++                 V+ +    +   ++ G
Sbjct: 39  RSKARKQALDILFEADLIGTDPLEVLAAR-------------PGVFTNPVRPFAADLVRG 85

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
           V   +  +D +++ CL+E W+ +R+  +   + R GV E++     P   +ISE + ++ 
Sbjct: 86  VAATQVGLDSVLTDCLSEGWTLARMPRVDRILARLGVFEILHT-DTPNPAVISEAIELSE 144

Query: 136 DFFYGDEPKFINAVLDKV 153
           +F   D   F+N +L  V
Sbjct: 145 EFSTDDSAPFLNGLLGAV 162


>gi|308233793|ref|ZP_07664530.1| NusB antitermination factor [Atopobium vaginae DSM 15829]
 gi|328943758|ref|ZP_08241223.1| transcription antitermination factor NusB [Atopobium vaginae DSM
           15829]
 gi|327491727|gb|EGF23501.1| transcription antitermination factor NusB [Atopobium vaginae DSM
           15829]
          Length = 239

 Score =  134 bits (337), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 37/147 (25%), Positives = 71/147 (48%), Gaps = 14/147 (9%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           R +AR  A+Q ++Q +       ++++   T    ++  LD          ++ + +  G
Sbjct: 13  RTLARSQALQLMFQAESRNMQVCDVLA---TNYLLSEGPLD----------DFGKRLALG 59

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
             + +  +D LIS  +T  W+ +RL  +  +ILR  + E+I+   V + V I+E V +A 
Sbjct: 60  TDELRDKLDALISRVIT-NWNLNRLLSVDRNILRLALYEMIKVDDVDIAVTINESVNLAK 118

Query: 136 DFFYGDEPKFINAVLDKVSRKEEIKRS 162
            +   +   F+N VL +V+R  E  R 
Sbjct: 119 AYGTDESSHFVNGVLGQVARMMENGRD 145


>gi|269956498|ref|YP_003326287.1| NusB antitermination factor [Xylanimonas cellulosilytica DSM 15894]
 gi|269305179|gb|ACZ30729.1| NusB antitermination factor [Xylanimonas cellulosilytica DSM 15894]
          Length = 138

 Score =  134 bits (337), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 29/139 (20%), Positives = 56/139 (40%), Gaps = 12/139 (8%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           R  AR  A   L++ +        ++ +                       ++   I+ G
Sbjct: 4   RTKARKRAADLLFEAEQRRWDAVRLLRDRIETPVSESPVP-----------QYAADIVEG 52

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
           V+  ++ ID L+ +  +  W+  R+  +  ++LR G  E++    VP  V I E V +A 
Sbjct: 53  VVAHRERIDELLETY-SNGWTIERMPAVDRALLRIGAWEILFNDDVPDAVAIDEAVDLAA 111

Query: 136 DFFYGDEPKFINAVLDKVS 154
                D P F+N +L ++ 
Sbjct: 112 QLSTDDSPSFVNGLLGRIV 130


>gi|300087424|ref|YP_003757946.1| NusB antitermination factor [Dehalogenimonas lykanthroporepellens
           BL-DC-9]
 gi|299527157|gb|ADJ25625.1| NusB antitermination factor [Dehalogenimonas lykanthroporepellens
           BL-DC-9]
          Length = 136

 Score =  134 bits (337), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 41/141 (29%), Positives = 70/141 (49%), Gaps = 12/141 (8%)

Query: 14  HRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVII 73
            RR  AR+ A+++LY++D+ G    ++I   E     A+   ++E+          + I+
Sbjct: 2   PRRHQARIVALKSLYEVDLTGHDPDKVI---ERRLLFAELGPELET--------LAQSIL 50

Query: 74  HGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCI 133
            G +  ++  D LI   L   +   +L  +  +ILR  + E+I  + VPV V I+E V +
Sbjct: 51  AGTLAAREEADSLIYR-LAPTYPVDQLAPVDRNILRLAIYEIIHDNKVPVRVAINEAVEL 109

Query: 134 AHDFFYGDEPKFINAVLDKVS 154
           A +F      KFIN VL  V+
Sbjct: 110 AKEFGSDGSAKFINGVLSSVA 130


>gi|171912809|ref|ZP_02928279.1| NusB antitermination factor [Verrucomicrobium spinosum DSM 4136]
          Length = 145

 Score =  134 bits (337), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 39/155 (25%), Positives = 69/155 (44%), Gaps = 15/155 (9%)

Query: 15  RRGIARLAAVQALYQIDIIGCSTTEIISEYET-YRFCADTELDVESVYLHVDLEWFRVII 73
           +R   R AA+Q L+  D+ G       + + T +    D                   ++
Sbjct: 5   KRREGRQAAMQFLFAHDVHGKVEDTDRAAFWTLHSATQDI------------RAHAESLV 52

Query: 74  HGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCI 133
            G+   +  ID  I++ L E + F RL ++  +ILR  V E++    VPV V+I+E V I
Sbjct: 53  TGIKTHQVQIDDCIAATL-ENFRFERLGVVDRNILRLAVYEMLHT-EVPVPVVINEAVEI 110

Query: 134 AHDFFYGDEPKFINAVLDKVSRKEEIKRSGCVSAI 168
           +  F       F+N VLDK++++   +++      
Sbjct: 111 SKVFGDTQTRAFVNGVLDKIAKRIPGRQAPSAPQP 145


>gi|145295740|ref|YP_001138561.1| transcription antitermination protein NusB [Corynebacterium
           glutamicum R]
 gi|140845660|dbj|BAF54659.1| hypothetical protein [Corynebacterium glutamicum R]
          Length = 212

 Score =  134 bits (337), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 45/165 (27%), Positives = 73/165 (44%), Gaps = 7/165 (4%)

Query: 3   IQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYL 62
           + + ++D K    R  AR+ AV  L++ +        II +   ++   DT   V  V  
Sbjct: 1   MSERRQDYKRHGSRYKARMRAVDILFEAESRDVDPVAIIDD--RHKLARDTNPIVAPV-- 56

Query: 63  HVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVP 122
               E+   II+GV      +D+ ++  + E W+  RL  +  +ILR    E+I    VP
Sbjct: 57  ---AEYTETIINGVAVELDTLDVFLAEHIAETWTLGRLPSVDRAILRVASWEMIYNTDVP 113

Query: 123 VEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRSGCVSA 167
           V   I E V IA ++       +INA LD ++ K E  R    + 
Sbjct: 114 VTTAIVEAVEIASEYSGDKSSAYINATLDAMASKVETLRERAANP 158


>gi|154502455|ref|ZP_02039515.1| hypothetical protein RUMGNA_00268 [Ruminococcus gnavus ATCC 29149]
 gi|153796851|gb|EDN79271.1| hypothetical protein RUMGNA_00268 [Ruminococcus gnavus ATCC 29149]
          Length = 132

 Score =  134 bits (337), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 37/139 (26%), Positives = 65/139 (46%), Gaps = 10/139 (7%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           R   R    + L+QI+         + E   +      EL   +     D E+ +  +  
Sbjct: 3   RTELREHIFKMLFQIEFN------TLEEMPKHLELYFEEL---TSAKEKDKEYIQKKLEA 53

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
           V+++ + ID +++   T  W  SR++ +  +ILR  V E+     VPV+V I+E V +A 
Sbjct: 54  VVEKLEEIDAILNEKAT-GWKTSRMNKVDLAILRLAVYEIKWDDDVPVKVAINEAVELAK 112

Query: 136 DFFYGDEPKFINAVLDKVS 154
            F   + P F+N VL K++
Sbjct: 113 KFSGEEGPAFVNGVLAKIA 131


>gi|313837743|gb|EFS75457.1| transcription antitermination factor NusB [Propionibacterium acnes
           HL037PA2]
 gi|314927375|gb|EFS91206.1| transcription antitermination factor NusB [Propionibacterium acnes
           HL044PA1]
 gi|314972681|gb|EFT16778.1| transcription antitermination factor NusB [Propionibacterium acnes
           HL037PA3]
 gi|328907460|gb|EGG27226.1| transcription antitermination factor NusB [Propionibacterium sp.
           P08]
          Length = 256

 Score =  134 bits (337), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 33/159 (20%), Positives = 72/159 (45%), Gaps = 19/159 (11%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           R  AR  A+  L++ D++G    E+++                SV+++    +   ++ G
Sbjct: 32  RSKARKQALDILFEADLMGTDPLEVLAAR-------------PSVFINPVRPFAADLVRG 78

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
           V   +  +D +++ CL+E W+  R+  +   + R G  E++     P   +ISE + ++ 
Sbjct: 79  VAATQAGLDSVLADCLSEGWTLDRMPRVDRILARLGTFEILHT-DTPNPAVISEAIELSE 137

Query: 136 DFFYGDEPKFINAVLDKV-----SRKEEIKRSGCVSAIT 169
           +F   D   F+N +L  V     +R E++     + + +
Sbjct: 138 EFSTDDSAPFLNGLLSAVISHGPARVEDLPSDDAIPSSS 176


>gi|315652076|ref|ZP_07905077.1| transcription antitermination factor NusB [Eubacterium saburreum
           DSM 3986]
 gi|315485723|gb|EFU76104.1| transcription antitermination factor NusB [Eubacterium saburreum
           DSM 3986]
          Length = 150

 Score =  134 bits (337), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 39/145 (26%), Positives = 67/145 (46%), Gaps = 4/145 (2%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDV---ESVYLHVDLEWFRVI 72
           R + R    + L+ +D       EI ++        + E DV   ++ Y   D+E+ R  
Sbjct: 7   RHLLREHCFKILFSLDFYPEEEAEIQTDNYFESPSLEDEDDVLIHDANYGDGDIEYIRSK 66

Query: 73  IHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVC 132
              V D +  ID +I+  L++ W   R+  +  SILR  + E+     +PV V I+E V 
Sbjct: 67  AMLVRDNQAEIDKMITE-LSQGWKLERIGRVEKSILRLAIAEMKYDSDIPVSVAINEAVE 125

Query: 133 IAHDFFYGDEPKFINAVLDKVSRKE 157
           +A  +   +   F+NA+L K   +E
Sbjct: 126 LAKAYGRDESYSFVNAILSKAGVEE 150


>gi|293607587|ref|ZP_06689921.1| conserved hypothetical protein [Achromobacter piechaudii ATCC
           43553]
 gi|292814020|gb|EFF73167.1| conserved hypothetical protein [Achromobacter piechaudii ATCC
           43553]
          Length = 169

 Score =  134 bits (337), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 39/147 (26%), Positives = 63/147 (42%), Gaps = 12/147 (8%)

Query: 24  VQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHI 83
           +Q +Y   + G   T+   E + +       L     +   D +WF+ ++HGV+     +
Sbjct: 32  LQGVYAWLLRGGEGTQDAGEIDAH-------LRDTEDFSEADAQWFKTLLHGVLREAPTL 84

Query: 84  DLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEP 143
               +  +      + L  +   IL  G  ELI    VP +V I+E V +A  F   D  
Sbjct: 85  RERFTPYVDR--PLAELSPVEHGILLIGSFELIHHVEVPYKVAINEAVELAKSFGGTDGF 142

Query: 144 KFINAVLDKVSRKEEIKRSGCVSAITQ 170
           KF+N VLDK++      R+  V A  Q
Sbjct: 143 KFVNGVLDKLAADV---RANEVQAAAQ 166


>gi|326790845|ref|YP_004308666.1| NusB antitermination factor [Clostridium lentocellum DSM 5427]
 gi|326541609|gb|ADZ83468.1| NusB antitermination factor [Clostridium lentocellum DSM 5427]
          Length = 139

 Score =  133 bits (336), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 43/144 (29%), Positives = 63/144 (43%), Gaps = 7/144 (4%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           R  AR   +Q LY+    G    E   E   Y      +   E       +++      G
Sbjct: 3   RRNARELIMQMLYE----GTFHPEEERERILYDQLNAMD-SKEKSANKAIVKFIEDTYFG 57

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
           V +  + ID LI+    + WS +R+  +  SILR  + EL     VPV+V ++E V IA 
Sbjct: 58  VYEHVKEIDALIAGA-AKNWSMARIAKVDLSILRLAIFELQYT-DVPVKVAVNEAVEIAK 115

Query: 136 DFFYGDEPKFINAVLDKVSRKEEI 159
            +     PKFIN VL  V++  E 
Sbjct: 116 IYSTDKSPKFINGVLGSVTQANEA 139


>gi|51473361|ref|YP_067118.1| transcription antitermination protein NusB [Rickettsia typhi str.
           Wilmington]
 gi|51459673|gb|AAU03636.1| transcription termination protein NusB (N utilization substance
           protein B) [Rickettsia typhi str. Wilmington]
          Length = 173

 Score =  133 bits (336), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 40/146 (27%), Positives = 79/146 (54%), Gaps = 2/146 (1%)

Query: 14  HRRGIARLAAVQALYQ-IDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVI 72
           +++ IAR+AAVQALYQ I        +I+            +L  ++  + + +  F+++
Sbjct: 26  NKKSIARIAAVQALYQNILQNNYDMYDIMQNILACYHSNSIDL-PKNFKISLSISHFKML 84

Query: 73  IHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVC 132
           +  V +    +D +I + LT       + ++L ++LR  + EL+ C + P +V+I+EY  
Sbjct: 85  VKSVFENINKLDEIIDNHLTNDKDPVHMPILLRALLRVSICELLFCSTTPAKVVINEYTD 144

Query: 133 IAHDFFYGDEPKFINAVLDKVSRKEE 158
           IA+D     E  F+N++LDK++++  
Sbjct: 145 IANDLLNEHEIGFVNSILDKIAQENN 170


>gi|50842668|ref|YP_055895.1| putative NusB-family protein [Propionibacterium acnes KPA171202]
 gi|289425085|ref|ZP_06426862.1| transcription antitermination factor NusB [Propionibacterium acnes
           SK187]
 gi|289428561|ref|ZP_06430245.1| transcription antitermination factor NusB [Propionibacterium acnes
           J165]
 gi|295130747|ref|YP_003581410.1| transcription antitermination factor NusB [Propionibacterium acnes
           SK137]
 gi|81611678|sp|Q6A8H8|NUSB_PROAC RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|50840270|gb|AAT82937.1| putative NusB-family protein [Propionibacterium acnes KPA171202]
 gi|289154063|gb|EFD02751.1| transcription antitermination factor NusB [Propionibacterium acnes
           SK187]
 gi|289158255|gb|EFD06474.1| transcription antitermination factor NusB [Propionibacterium acnes
           J165]
 gi|291375576|gb|ADD99430.1| transcription antitermination factor NusB [Propionibacterium acnes
           SK137]
 gi|313764289|gb|EFS35653.1| transcription antitermination factor NusB [Propionibacterium acnes
           HL013PA1]
 gi|313771992|gb|EFS37958.1| transcription antitermination factor NusB [Propionibacterium acnes
           HL074PA1]
 gi|313791976|gb|EFS40077.1| transcription antitermination factor NusB [Propionibacterium acnes
           HL110PA1]
 gi|313802074|gb|EFS43308.1| transcription antitermination factor NusB [Propionibacterium acnes
           HL110PA2]
 gi|313807685|gb|EFS46172.1| transcription antitermination factor NusB [Propionibacterium acnes
           HL087PA2]
 gi|313810192|gb|EFS47913.1| transcription antitermination factor NusB [Propionibacterium acnes
           HL083PA1]
 gi|313812780|gb|EFS50494.1| transcription antitermination factor NusB [Propionibacterium acnes
           HL025PA1]
 gi|313816197|gb|EFS53911.1| transcription antitermination factor NusB [Propionibacterium acnes
           HL059PA1]
 gi|313818722|gb|EFS56436.1| transcription antitermination factor NusB [Propionibacterium acnes
           HL046PA2]
 gi|313820492|gb|EFS58206.1| transcription antitermination factor NusB [Propionibacterium acnes
           HL036PA1]
 gi|313822702|gb|EFS60416.1| transcription antitermination factor NusB [Propionibacterium acnes
           HL036PA2]
 gi|313825364|gb|EFS63078.1| transcription antitermination factor NusB [Propionibacterium acnes
           HL063PA1]
 gi|313827660|gb|EFS65374.1| transcription antitermination factor NusB [Propionibacterium acnes
           HL063PA2]
 gi|313830523|gb|EFS68237.1| transcription antitermination factor NusB [Propionibacterium acnes
           HL007PA1]
 gi|313833559|gb|EFS71273.1| transcription antitermination factor NusB [Propionibacterium acnes
           HL056PA1]
 gi|313838895|gb|EFS76609.1| transcription antitermination factor NusB [Propionibacterium acnes
           HL086PA1]
 gi|314915279|gb|EFS79110.1| transcription antitermination factor NusB [Propionibacterium acnes
           HL005PA4]
 gi|314918171|gb|EFS82002.1| transcription antitermination factor NusB [Propionibacterium acnes
           HL050PA1]
 gi|314920247|gb|EFS84078.1| transcription antitermination factor NusB [Propionibacterium acnes
           HL050PA3]
 gi|314925034|gb|EFS88865.1| transcription antitermination factor NusB [Propionibacterium acnes
           HL036PA3]
 gi|314931770|gb|EFS95601.1| transcription antitermination factor NusB [Propionibacterium acnes
           HL067PA1]
 gi|314955572|gb|EFS99973.1| transcription antitermination factor NusB [Propionibacterium acnes
           HL027PA1]
 gi|314958067|gb|EFT02170.1| transcription antitermination factor NusB [Propionibacterium acnes
           HL002PA1]
 gi|314960362|gb|EFT04464.1| transcription antitermination factor NusB [Propionibacterium acnes
           HL002PA2]
 gi|314962632|gb|EFT06732.1| transcription antitermination factor NusB [Propionibacterium acnes
           HL082PA1]
 gi|314967503|gb|EFT11602.1| transcription antitermination factor NusB [Propionibacterium acnes
           HL037PA1]
 gi|314973523|gb|EFT17619.1| transcription antitermination factor NusB [Propionibacterium acnes
           HL053PA1]
 gi|314976203|gb|EFT20298.1| transcription antitermination factor NusB [Propionibacterium acnes
           HL045PA1]
 gi|314978636|gb|EFT22730.1| transcription antitermination factor NusB [Propionibacterium acnes
           HL072PA2]
 gi|314983775|gb|EFT27867.1| transcription antitermination factor NusB [Propionibacterium acnes
           HL005PA1]
 gi|314987956|gb|EFT32047.1| transcription antitermination factor NusB [Propionibacterium acnes
           HL005PA2]
 gi|314989766|gb|EFT33857.1| transcription antitermination factor NusB [Propionibacterium acnes
           HL005PA3]
 gi|315077848|gb|EFT49899.1| transcription antitermination factor NusB [Propionibacterium acnes
           HL053PA2]
 gi|315080473|gb|EFT52449.1| transcription antitermination factor NusB [Propionibacterium acnes
           HL078PA1]
 gi|315084144|gb|EFT56120.1| transcription antitermination factor NusB [Propionibacterium acnes
           HL027PA2]
 gi|315085487|gb|EFT57463.1| transcription antitermination factor NusB [Propionibacterium acnes
           HL002PA3]
 gi|315088456|gb|EFT60432.1| transcription antitermination factor NusB [Propionibacterium acnes
           HL072PA1]
 gi|315096070|gb|EFT68046.1| transcription antitermination factor NusB [Propionibacterium acnes
           HL038PA1]
 gi|315098699|gb|EFT70675.1| transcription antitermination factor NusB [Propionibacterium acnes
           HL059PA2]
 gi|315101532|gb|EFT73508.1| transcription antitermination factor NusB [Propionibacterium acnes
           HL046PA1]
 gi|315105759|gb|EFT77735.1| transcription antitermination factor NusB [Propionibacterium acnes
           HL030PA1]
 gi|327326350|gb|EGE68140.1| n utilization substance protein B-like protein [Propionibacterium
           acnes HL096PA2]
 gi|327331775|gb|EGE73512.1| n utilization substance protein B-like protein [Propionibacterium
           acnes HL096PA3]
 gi|327443552|gb|EGE90206.1| transcription antitermination factor NusB [Propionibacterium acnes
           HL013PA2]
 gi|327445756|gb|EGE92410.1| transcription antitermination factor NusB [Propionibacterium acnes
           HL043PA2]
 gi|327448261|gb|EGE94915.1| transcription antitermination factor NusB [Propionibacterium acnes
           HL043PA1]
 gi|327450617|gb|EGE97271.1| transcription antitermination factor NusB [Propionibacterium acnes
           HL087PA3]
 gi|327453305|gb|EGE99959.1| transcription antitermination factor NusB [Propionibacterium acnes
           HL092PA1]
 gi|327454045|gb|EGF00700.1| transcription antitermination factor NusB [Propionibacterium acnes
           HL083PA2]
 gi|328753303|gb|EGF66919.1| transcription antitermination factor NusB [Propionibacterium acnes
           HL025PA2]
 gi|328754035|gb|EGF67651.1| transcription antitermination factor NusB [Propionibacterium acnes
           HL087PA1]
 gi|328754763|gb|EGF68379.1| transcription antitermination factor NusB [Propionibacterium acnes
           HL020PA1]
 gi|328760688|gb|EGF74254.1| n utilization substance protein B-like protein [Propionibacterium
           acnes HL099PA1]
 gi|332675591|gb|AEE72407.1| N utilization substance protein B [Propionibacterium acnes 266]
          Length = 261

 Score =  133 bits (336), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 31/138 (22%), Positives = 63/138 (45%), Gaps = 14/138 (10%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           R  AR  A+  L++ D+IG    E+++                 V+ +    +   ++ G
Sbjct: 39  RSKARKQALDILFEADLIGTDPLEVLAAR-------------PGVFTNPVRPFAADLVRG 85

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
           V   +  +D +++ CL+E W+ +R+  +   + R G  E++     P   +ISE + ++ 
Sbjct: 86  VAATQVGLDSVLTDCLSEGWTLARMPRVDRILARLGAFEILHT-DTPNPAVISEAIELSE 144

Query: 136 DFFYGDEPKFINAVLDKV 153
           +F   D   F+N +L  V
Sbjct: 145 EFSTDDSAPFLNGLLGAV 162


>gi|312869983|ref|ZP_07730122.1| transcription antitermination factor NusB [Lactobacillus oris
           PB013-T2-3]
 gi|311094568|gb|EFQ52873.1| transcription antitermination factor NusB [Lactobacillus oris
           PB013-T2-3]
          Length = 136

 Score =  133 bits (336), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 37/148 (25%), Positives = 58/148 (39%), Gaps = 12/148 (8%)

Query: 12  LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71
           +S  R   R  A Q L+ +     +    I +   +                   E+ + 
Sbjct: 1   MSLTRHALREEAFQVLFALQTNPDADLATIYQSIPHHDER------------AIPEYVQR 48

Query: 72  IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
           +  GV DR+  +D  ISS L   W+  RL      ILR  + EL     VP  V I+E +
Sbjct: 49  LATGVSDRQAALDGQISSLLASDWTIDRLAKADLIILRLALYELQYVEEVPTPVAINEAL 108

Query: 132 CIAHDFFYGDEPKFINAVLDKVSRKEEI 159
            +A +F      KFIN  L +  ++  +
Sbjct: 109 ELAKEFSNDQSRKFINGALGRFEKENNL 136


>gi|320105797|ref|YP_004181387.1| NusB antitermination factor [Terriglobus saanensis SP1PR4]
 gi|319924318|gb|ADV81393.1| NusB antitermination factor [Terriglobus saanensis SP1PR4]
          Length = 146

 Score =  133 bits (336), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 37/147 (25%), Positives = 68/147 (46%), Gaps = 7/147 (4%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLE-WFRVIIH 74
           R  +R  A+Q L+Q D+   S+ ++   +   R     E +     +  D + +   +  
Sbjct: 4   RRKSRELAMQMLFQADLGKQSSEDVQKSFWNAR-----EDEAGKATIDADTQGFAEDLFR 58

Query: 75  GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134
             M +++ ID L+     + W  +R+  +  ++LR  V E+I   S P  +II+E + I 
Sbjct: 59  VAMVKQEEIDTLLEEH-AQNWRVARMAAVDRNLLRMAVAEMIGYPSTPHPIIINEALEIG 117

Query: 135 HDFFYGDEPKFINAVLDKVSRKEEIKR 161
             +   +   F+N VLD V+R    KR
Sbjct: 118 RRYAAPESVNFLNGVLDAVARALMAKR 144


>gi|19552830|ref|NP_600832.1| transcription antitermination protein NusB [Corynebacterium
           glutamicum ATCC 13032]
 gi|62390501|ref|YP_225903.1| transcription antitermination protein NusB [Corynebacterium
           glutamicum ATCC 13032]
 gi|24638069|sp|Q8NQ33|NUSB_CORGL RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|21324387|dbj|BAB99011.1| Transcription termination factor [Corynebacterium glutamicum ATCC
           13032]
 gi|41325838|emb|CAF21627.1| Transcription termination factor [Corynebacterium glutamicum ATCC
           13032]
          Length = 227

 Score =  133 bits (336), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 45/165 (27%), Positives = 73/165 (44%), Gaps = 7/165 (4%)

Query: 3   IQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYL 62
           + + ++D K    R  AR+ AV  L++ +        II +   ++   DT   V  V  
Sbjct: 1   MSERRQDYKRHGSRYKARMRAVDILFEAESRDVDPVAIIDD--RHKLARDTNPIVAPV-- 56

Query: 63  HVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVP 122
               E+   II+GV      +D+ ++  + E W+  RL  +  +ILR    E+I    VP
Sbjct: 57  ---AEYTETIINGVAVELDTLDVFLAEHIAETWTLGRLPSVDRAILRVASWEMIYNADVP 113

Query: 123 VEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRSGCVSA 167
           V   I E V IA ++       +INA LD ++ K E  R    + 
Sbjct: 114 VTTAIVEAVEIASEYSGDKSSAYINATLDAMASKVETLRERAANP 158


>gi|296454538|ref|YP_003661681.1| NusB antitermination factor [Bifidobacterium longum subsp. longum
           JDM301]
 gi|296183970|gb|ADH00852.1| NusB antitermination factor [Bifidobacterium longum subsp. longum
           JDM301]
          Length = 187

 Score =  133 bits (335), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 32/138 (23%), Positives = 56/138 (40%), Gaps = 12/138 (8%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           R  AR  A+  LY+ D        ++ E   +        D           +   I+ G
Sbjct: 3   RSTARKRALNTLYEADEKSQDILSLLDERIAHPGAQTPLPD-----------YAIEIVKG 51

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
           V + ++ ID+ +    +  W   R+ ++  +ILR    E++    VP +V I E + +A 
Sbjct: 52  VAEHRRQIDMTLDEH-STGWKVRRMGVVDRNILRIAAWEILFNDDVPDKVAIDEALALAK 110

Query: 136 DFFYGDEPKFINAVLDKV 153
                D P FI+ +L  V
Sbjct: 111 TLCDDDSPAFIHGLLSAV 128


>gi|23336051|ref|ZP_00121280.1| COG0781: Transcription termination factor [Bifidobacterium longum
           DJO10A]
 gi|23464693|ref|NP_695296.1| NusB antitermination protein [Bifidobacterium longum NCC2705]
 gi|189438946|ref|YP_001954027.1| transcription termination factor [Bifidobacterium longum DJO10A]
 gi|227546799|ref|ZP_03976848.1| NusB antitermination factor [Bifidobacterium longum subsp. infantis
           ATCC 55813]
 gi|239620779|ref|ZP_04663810.1| transcription antitermination factor NusB [Bifidobacterium longum
           subsp. infantis CCUG 52486]
 gi|312132387|ref|YP_003999726.1| nusb [Bifidobacterium longum subsp. longum BBMN68]
 gi|322691569|ref|YP_004221139.1| transcription antitermination factor NusB [Bifidobacterium longum
           subsp. longum JCM 1217]
 gi|32171480|sp|Q8G817|NUSB_BIFLO RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|238692035|sp|B3DQ30|NUSB_BIFLD RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|23325257|gb|AAN23932.1| NusB antitermination protein [Bifidobacterium longum NCC2705]
 gi|189427381|gb|ACD97529.1| Transcription termination factor [Bifidobacterium longum DJO10A]
 gi|227212761|gb|EEI80642.1| NusB antitermination factor [Bifidobacterium longum subsp. infantis
           ATCC 55813]
 gi|239516355|gb|EEQ56222.1| transcription antitermination factor NusB [Bifidobacterium longum
           subsp. infantis CCUG 52486]
 gi|291516175|emb|CBK69791.1| transcription antitermination factor NusB [Bifidobacterium longum
           subsp. longum F8]
 gi|311772581|gb|ADQ02069.1| NusB [Bifidobacterium longum subsp. longum BBMN68]
 gi|320456425|dbj|BAJ67047.1| transcription antitermination factor NusB [Bifidobacterium longum
           subsp. longum JCM 1217]
          Length = 190

 Score =  133 bits (335), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 32/138 (23%), Positives = 56/138 (40%), Gaps = 12/138 (8%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           R  AR  A+  LY+ D        ++ E   +        D           +   I+ G
Sbjct: 3   RSTARKRALNTLYEADEKSQDILSLLDERIAHPGAQTPLPD-----------YAIEIVKG 51

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
           V + ++ ID+ +    +  W   R+ ++  +ILR    E++    VP +V I E + +A 
Sbjct: 52  VAEHRRQIDMTLDEH-STGWKVRRMGVVDRNILRIAAWEILFTDDVPDKVAIDEALALAK 110

Query: 136 DFFYGDEPKFINAVLDKV 153
                D P FI+ +L  V
Sbjct: 111 TLCDDDSPAFIHGLLSAV 128


>gi|224373796|ref|YP_002608168.1| transcription antitermination factor NusB [Nautilia profundicola
           AmH]
 gi|223589865|gb|ACM93601.1| transcription antitermination factor NusB [Nautilia profundicola
           AmH]
          Length = 136

 Score =  133 bits (335), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 38/141 (26%), Positives = 68/141 (48%), Gaps = 13/141 (9%)

Query: 17  GIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGV 76
             AR A +Q LY  ++      + I +++        E+  +        E+ + ++ GV
Sbjct: 5   THAREAVIQTLYAQEMGN---DQAIEQFD--------EILKDKKVKGSKAEFAKKLLKGV 53

Query: 77  MDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHD 136
            +    ID +I + L   W F RLD +   ILR G+ E++     P +++I E V IA +
Sbjct: 54  SEHIDKIDEIIKNHLI-DWDFERLDKVDKQILRVGIYEILYT-DTPYQIVIDEAVKIAKN 111

Query: 137 FFYGDEPKFINAVLDKVSRKE 157
           F       FIN +LD+V++++
Sbjct: 112 FSEDKAKSFINGILDRVAKEK 132


>gi|50086525|ref|YP_048035.1| transcription antitermination protein NusB [Acinetobacter sp. ADP1]
 gi|81612974|sp|Q6F6V2|NUSB_ACIAD RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|49532501|emb|CAG70213.1| transcription termination, L factor (N utilization substance
           protein B) [Acinetobacter sp. ADP1]
          Length = 149

 Score =  133 bits (335), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 36/142 (25%), Positives = 66/142 (46%), Gaps = 14/142 (9%)

Query: 22  AAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQ 81
            AVQ +Y+  +      EI +              VE+    VDL ++  ++  V+ + +
Sbjct: 18  FAVQGIYEWQMSRNPVHEIEA-----------RTRVENAMHKVDLGYYHELLTQVVAQHE 66

Query: 82  HIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGD 141
            +D L+   L  +   + LD +  + LR G  EL +   +P  V++ E + +A  F   D
Sbjct: 67  TLDTLLVPVLDRE--LNALDGVELATLRLGAYELRDHLEIPYRVVLDEAIELAKHFGGAD 124

Query: 142 EPKFINAVLDKVS-RKEEIKRS 162
             K+IN VLD+++ R  E ++ 
Sbjct: 125 SHKYINGVLDRLASRLREAEKQ 146


>gi|257784275|ref|YP_003179492.1| NusB antitermination factor [Atopobium parvulum DSM 20469]
 gi|257472782|gb|ACV50901.1| NusB antitermination factor [Atopobium parvulum DSM 20469]
          Length = 167

 Score =  133 bits (335), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 36/147 (24%), Positives = 67/147 (45%), Gaps = 14/147 (9%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           R  AR  A+Q L+Q +    S  E++          D  L    +      E+ R++  G
Sbjct: 8   RTRARSQALQLLFQAEATNRSVLEVL--------GGDYTLSEGPLD-----EYARLLAVG 54

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
               +  +D +I++  ++ WS  R+  +  ++LR  + E+++   V V V I+E V +A 
Sbjct: 55  ADGIRDDLDDIIAAY-SKDWSIDRMPSVDRNLLRISLYEILKVPEVDVAVAINEVVDLAR 113

Query: 136 DFFYGDEPKFINAVLDKVSRKEEIKRS 162
            +   D P+FIN VL ++    +    
Sbjct: 114 AYCGDDSPRFINGVLGRIVDDIDAGED 140


>gi|157825345|ref|YP_001493065.1| transcription antitermination protein NusB [Rickettsia akari str.
           Hartford]
 gi|166215710|sp|A8GMD2|NUSB_RICAH RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|157799303|gb|ABV74557.1| transcription antitermination protein NusB [Rickettsia akari str.
           Hartford]
          Length = 156

 Score =  133 bits (335), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 42/147 (28%), Positives = 83/147 (56%), Gaps = 2/147 (1%)

Query: 14  HRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLE--WFRV 71
           +++ IAR+AAVQA+YQ  +      + I +     +  D+ +   +  L + L    F++
Sbjct: 7   NKKSIARIAAVQAIYQNILQNNDDMDDIMQNVLSFYRNDSSITNLTGNLKISLSISHFKI 66

Query: 72  IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
           ++  V +    +D +I + LT     + + ++L ++LRAG+ EL+   + P +V+I+EY 
Sbjct: 67  LVKSVFENINKLDEIIDNHLTNDKDPAHMPILLRALLRAGIYELLFYPTTPAKVVINEYT 126

Query: 132 CIAHDFFYGDEPKFINAVLDKVSRKEE 158
            IA+D   G E  F+N+VLD +++++ 
Sbjct: 127 DIANDMLNGYEIGFVNSVLDTIAKEKN 153


>gi|259503557|ref|ZP_05746459.1| N utilization substance protein B [Lactobacillus antri DSM 16041]
 gi|259168470|gb|EEW52965.1| N utilization substance protein B [Lactobacillus antri DSM 16041]
          Length = 136

 Score =  133 bits (335), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 36/148 (24%), Positives = 60/148 (40%), Gaps = 12/148 (8%)

Query: 12  LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71
           +S  R   R  A Q L+ +        ++ + Y +     +  L           ++ R 
Sbjct: 1   MSLTRHALREEAFQVLFALQTNPE--ADLATIYRSIPHHDERALP----------DYVRQ 48

Query: 72  IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
           +  GV +R+  +D  IS  L   W+  RL      ILR  + EL     VP  V I+E +
Sbjct: 49  LATGVSERQADLDEQISGLLASDWTIDRLAKADLIILRLALYELQYVDEVPTAVAINEAL 108

Query: 132 CIAHDFFYGDEPKFINAVLDKVSRKEEI 159
            +A +F      KFIN  L +  ++  +
Sbjct: 109 ELAKEFSSDQSRKFINGALGRFEKENNL 136


>gi|119390814|sp|Q68XK6|NUSB_RICTY RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
          Length = 154

 Score =  133 bits (335), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 40/146 (27%), Positives = 79/146 (54%), Gaps = 2/146 (1%)

Query: 14  HRRGIARLAAVQALYQ-IDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVI 72
           +++ IAR+AAVQALYQ I        +I+            +L  ++  + + +  F+++
Sbjct: 7   NKKSIARIAAVQALYQNILQNNYDMYDIMQNILACYHSNSIDL-PKNFKISLSISHFKML 65

Query: 73  IHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVC 132
           +  V +    +D +I + LT       + ++L ++LR  + EL+ C + P +V+I+EY  
Sbjct: 66  VKSVFENINKLDEIIDNHLTNDKDPVHMPILLRALLRVSICELLFCSTTPAKVVINEYTD 125

Query: 133 IAHDFFYGDEPKFINAVLDKVSRKEE 158
           IA+D     E  F+N++LDK++++  
Sbjct: 126 IANDLLNEHEIGFVNSILDKIAQENN 151


>gi|289675585|ref|ZP_06496475.1| transcription antitermination protein NusB [Pseudomonas syringae
           pv. syringae FF5]
          Length = 127

 Score =  133 bits (335), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 43/135 (31%), Positives = 65/135 (48%), Gaps = 20/135 (14%)

Query: 2   TIQDNKKDLK-------LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTE 54
           T Q N +D K        S +R  AR  A QALYQ  + G S  EI +++          
Sbjct: 6   TDQFNPRDAKSPEAAKGKSAKRREARQMATQALYQWHMAGHSLNEIEAQFR--------- 56

Query: 55  LDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLE 114
             V++ + +VD  +F  ++HGV   K  ID  +S CL    +   LD +  ++LR    E
Sbjct: 57  --VDNDFSNVDGTYFHELLHGVATNKTEIDTALSPCLD--LTIEELDPVELAVLRLSTFE 112

Query: 115 LIECHSVPVEVIISE 129
           L++   VP  V+I+E
Sbjct: 113 LLKRIDVPYRVVINE 127


>gi|299768336|ref|YP_003730362.1| transcription antitermination protein NusB [Acinetobacter sp. DR1]
 gi|298698424|gb|ADI88989.1| transcription antitermination protein NusB [Acinetobacter sp. DR1]
          Length = 149

 Score =  132 bits (334), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 36/133 (27%), Positives = 60/133 (45%), Gaps = 13/133 (9%)

Query: 22  AAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQ 81
            AVQ +Y+  +      EI +               E+    VDL ++  ++  V+  + 
Sbjct: 18  FAVQGIYEWQMSHNPVHEIEA-----------RTRAENAMHKVDLNYYHELLTQVIALRD 66

Query: 82  HIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGD 141
            +D L+   L  +   S LD +  + LR G  EL +   VP  V++ E + +A  F   D
Sbjct: 67  DLDALLIPVLDRE--LSALDGVELATLRLGAYELRDHLEVPYRVVLDEAIELAKHFGGAD 124

Query: 142 EPKFINAVLDKVS 154
             K+IN VLD++S
Sbjct: 125 SHKYINGVLDRLS 137


>gi|301345751|ref|ZP_07226492.1| transcription antitermination protein NusB [Acinetobacter baumannii
           AB056]
 gi|301512968|ref|ZP_07238205.1| transcription antitermination protein NusB [Acinetobacter baumannii
           AB058]
 gi|301596175|ref|ZP_07241183.1| transcription antitermination protein NusB [Acinetobacter baumannii
           AB059]
          Length = 135

 Score =  132 bits (334), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 33/131 (25%), Positives = 58/131 (44%), Gaps = 13/131 (9%)

Query: 22  AAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQ 81
            AVQ +Y+  +      EI +               E+    VDL ++  ++  V+ + +
Sbjct: 18  FAVQGIYEWQMSHNPVHEIEA-----------RTRAENAMHKVDLNYYHELLTQVIAQHE 66

Query: 82  HIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGD 141
            +D L+   L  +     LD +  + LR G  EL +   +P  V++ E + +A  F   D
Sbjct: 67  DLDALLIPVLDRE--IDALDGVELATLRLGAYELRDHLEIPYRVVLDEAIELAKHFGGAD 124

Query: 142 EPKFINAVLDK 152
             K+IN VLD+
Sbjct: 125 SHKYINGVLDR 135


>gi|315222311|ref|ZP_07864217.1| transcription antitermination factor NusB [Streptococcus anginosus
           F0211]
 gi|315188644|gb|EFU22353.1| transcription antitermination factor NusB [Streptococcus anginosus
           F0211]
          Length = 141

 Score =  132 bits (334), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 38/139 (27%), Positives = 58/139 (41%), Gaps = 8/139 (5%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           R   R  A QAL  ++             E  RF    + D+ +        +   ++ G
Sbjct: 9   RRELRERAFQALMSLEYEKDIV-------EACRFAYLYDKDMTNDSDVEIPAFLLNLVTG 61

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
           V   K  +D  +S  L E W+  RL +I  +ILR G+ E+ E    P  V I+E + ++ 
Sbjct: 62  VEQSKNELDDKLSQYLKEGWTLERLTLIEKNILRLGLFEMTEF-DTPQLVAINEAIELSK 120

Query: 136 DFFYGDEPKFINAVLDKVS 154
            F      KFIN +L K  
Sbjct: 121 KFSDEKSSKFINGILSKFV 139


>gi|282853858|ref|ZP_06263195.1| transcription antitermination factor NusB [Propionibacterium acnes
           J139]
 gi|282583311|gb|EFB88691.1| transcription antitermination factor NusB [Propionibacterium acnes
           J139]
 gi|314923552|gb|EFS87383.1| transcription antitermination factor NusB [Propionibacterium acnes
           HL001PA1]
 gi|314966598|gb|EFT10697.1| transcription antitermination factor NusB [Propionibacterium acnes
           HL082PA2]
 gi|314981523|gb|EFT25617.1| transcription antitermination factor NusB [Propionibacterium acnes
           HL110PA3]
 gi|315092187|gb|EFT64163.1| transcription antitermination factor NusB [Propionibacterium acnes
           HL110PA4]
 gi|315092880|gb|EFT64856.1| transcription antitermination factor NusB [Propionibacterium acnes
           HL060PA1]
 gi|315103598|gb|EFT75574.1| transcription antitermination factor NusB [Propionibacterium acnes
           HL050PA2]
 gi|327327421|gb|EGE69197.1| n utilization substance protein B-like protein [Propionibacterium
           acnes HL103PA1]
          Length = 261

 Score =  132 bits (334), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 31/138 (22%), Positives = 63/138 (45%), Gaps = 14/138 (10%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           R  AR  A+  L++ D+IG    E+++                 V+ +    +   ++ G
Sbjct: 39  RSKARKQALDILFEADLIGTDPLEVLAAR-------------PGVFTNPVRPFAADLVRG 85

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
           V   +  +D +++ CL+E W+ +R+  +   + R G  E++     P   +ISE + ++ 
Sbjct: 86  VTATQVGLDSVLTDCLSEGWTLARMPRVDRILARLGAFEILHT-DTPNPAVISEAIELSE 144

Query: 136 DFFYGDEPKFINAVLDKV 153
           +F   D   F+N +L  V
Sbjct: 145 EFSTDDSAPFLNGLLGAV 162


>gi|163858272|ref|YP_001632570.1| transcription antitermination protein NusB [Bordetella petrii DSM
           12804]
 gi|163262000|emb|CAP44302.1| N utilization substance protein B homolog [Bordetella petrii]
          Length = 138

 Score =  132 bits (334), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 37/144 (25%), Positives = 63/144 (43%), Gaps = 12/144 (8%)

Query: 24  VQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHI 83
           +Q +Y   + G   T+   E + +   AD        +   D +WF+ ++HGV+     +
Sbjct: 1   MQGVYAWLLRGGEGTQDAGEIDAHLRDAD-------DFSEADAQWFKTLLHGVLQEAGGL 53

Query: 84  DLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEP 143
               +  +        L  +   IL  G  EL+    VP +V I+E V +A  F   D  
Sbjct: 54  RERFTPYIDR--PLGELSPVEHGILLIGSYELVHHLEVPYKVAINEAVELAKSFGGTDGF 111

Query: 144 KFINAVLDKVS---RKEEIKRSGC 164
           KF+N VLDK++   R  E++ +  
Sbjct: 112 KFVNGVLDKLAADVRAAEVQAAAS 135


>gi|311064653|ref|YP_003971378.1| n utilization substance protein B NusB [Bifidobacterium bifidum
           PRL2010]
 gi|310866972|gb|ADP36341.1| NusB N utilization substance protein B [Bifidobacterium bifidum
           PRL2010]
          Length = 223

 Score =  132 bits (334), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 36/147 (24%), Positives = 62/147 (42%), Gaps = 12/147 (8%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           R  AR  A+  LY+ D  G     +++E              E        ++   I+ G
Sbjct: 3   RSTARKRALNTLYEADEKGQDFLSLLAERIE-----------EPGAQTPLPDYAIEIVRG 51

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
           V D ++ ID +++   +  W   R+ ++  +ILR    E+I    VP  V I E + +A 
Sbjct: 52  VADHRREIDYMLNEH-STGWKVRRMAVVDRNILRIAAWEIIFNDDVPDRVAIDEALGLAK 110

Query: 136 DFFYGDEPKFINAVLDKVSRKEEIKRS 162
               GD P FI+ +L  +    E + +
Sbjct: 111 TLSDGDSPAFIHGLLSAICDDTEGREA 137


>gi|168485566|ref|ZP_02710074.1| transcription antitermination factor NusB [Streptococcus pneumoniae
           CDC1087-00]
 gi|183571084|gb|EDT91612.1| transcription antitermination factor NusB [Streptococcus pneumoniae
           CDC1087-00]
          Length = 140

 Score =  132 bits (333), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 35/143 (24%), Positives = 63/143 (44%), Gaps = 11/143 (7%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           R   R  A QAL  ++  G +           RF    + +   V L     +   ++ G
Sbjct: 9   RRQLRKCAFQALMSLEF-GTNVET------ACRFAYTHDREDTDVQLPA---FLIDLVSG 58

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
           +  +K+ +D  I+  L   W+  RL ++  ++LR GV E+      P  V ++E + +A 
Sbjct: 59  IQAKKEELDKQITQHLKVGWTIERLTLVERNLLRLGVFEITSF-DTPQLVAVNEAIELAK 117

Query: 136 DFFYGDEPKFINAVLDKVSRKEE 158
           DF      +FIN +L +   +E+
Sbjct: 118 DFSDQKSARFINGLLSQFVTEEQ 140


>gi|312134817|ref|YP_004002155.1| nusb antitermination factor [Caldicellulosiruptor owensensis OL]
 gi|311774868|gb|ADQ04355.1| NusB antitermination factor [Caldicellulosiruptor owensensis OL]
          Length = 134

 Score =  132 bits (333), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 42/141 (29%), Positives = 71/141 (50%), Gaps = 8/141 (5%)

Query: 24  VQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHI 83
           ++ LY       S  +II  Y+ +R     EL+ +  +  +D E+   ++ GV+  +Q I
Sbjct: 1   MKILYAYRFEDGS-QDIIEFYKKFR-----ELNQDEDFRDIDEEYLEKLLKGVIQNQQRI 54

Query: 84  DLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEP 143
           D LI    ++ W  SRL M+   ++R  V EL+    VPV V I E V +++ F     P
Sbjct: 55  DSLIEKY-SKDWPLSRLPMVELELMRVAVYELLFEEDVPVSVAIDEAVDLSNIFGIEKAP 113

Query: 144 KFINAVLDKVSRKEEIKRSGC 164
            F+N +L +++   E+KR   
Sbjct: 114 SFVNGILGRIA-ANEVKRGQK 133


>gi|157803349|ref|YP_001491898.1| transcription antitermination protein NusB [Rickettsia canadensis
           str. McKiel]
 gi|157784612|gb|ABV73113.1| transcription antitermination protein NusB [Rickettsia canadensis
           str. McKiel]
          Length = 178

 Score =  132 bits (333), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 40/147 (27%), Positives = 83/147 (56%), Gaps = 2/147 (1%)

Query: 14  HRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDV--ESVYLHVDLEWFRV 71
           +++ IAR+AAVQA+YQ  +      E I +     +  +  +    E++ + + +  F++
Sbjct: 29  NKKSIARIAAVQAMYQHILQDNQDMEYILQNVLSFYQNNNSITDLSENLKISLSISHFKM 88

Query: 72  IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
           ++  V +    +D +I + LT     + + ++L ++ R  + EL+ CH+ P +V+I+EY 
Sbjct: 89  LVKSVFENFNKLDEMIDNHLTNDKDPAHMPILLRALFRVSICELLFCHTTPAKVVINEYT 148

Query: 132 CIAHDFFYGDEPKFINAVLDKVSRKEE 158
            IA+D     E  F+N+VLDK++++ +
Sbjct: 149 DIANDMLNEHEIGFVNSVLDKIAKENK 175


>gi|20141624|sp|Q9ZE01|NUSB_RICPR RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|292571756|gb|ADE29671.1| N utilization substance protein B [Rickettsia prowazekii Rp22]
          Length = 155

 Score =  132 bits (333), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 39/146 (26%), Positives = 79/146 (54%), Gaps = 1/146 (0%)

Query: 14  HRRGIARLAAVQALYQ-IDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVI 72
           +++ IAR+AAVQALYQ I        +I+          ++    ++  + + +  F+++
Sbjct: 7   NKKSIARIAAVQALYQNILQNNYDMYDIMQNILACYHSNNSIDLPKNFKISLSISHFKML 66

Query: 73  IHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVC 132
           +  V +    +D +I + LT       + ++L ++LR  + EL+ C + P +V+I+EY  
Sbjct: 67  VKSVFENINKLDEIIDNHLTNAKDSVHMPILLRALLRVSICELLFCSTTPAKVVINEYTD 126

Query: 133 IAHDFFYGDEPKFINAVLDKVSRKEE 158
           IA+D     E  F+N++LDK++++  
Sbjct: 127 IANDLLNEHEIGFVNSILDKIAQENN 152


>gi|226323208|ref|ZP_03798726.1| hypothetical protein COPCOM_00980 [Coprococcus comes ATCC 27758]
 gi|225208398|gb|EEG90752.1| hypothetical protein COPCOM_00980 [Coprococcus comes ATCC 27758]
          Length = 130

 Score =  132 bits (333), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 37/140 (26%), Positives = 59/140 (42%), Gaps = 11/140 (7%)

Query: 15  RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74
           RR   R    + L+ I        E I  Y      A  E             + R  + 
Sbjct: 2   RRSKVREHIFKMLFSIGFDAADADEQIELYLEQVEEASEEERG----------YMRKKVK 51

Query: 75  GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134
            +   ++ ID +I+   T  W   R++ +  S+LR  V E+     VPV+V I+E V +A
Sbjct: 52  DIAAHEEEIDAMINEH-TTGWKTGRMNKVDLSVLRLAVYEMKWDDEVPVKVAINEAVELA 110

Query: 135 HDFFYGDEPKFINAVLDKVS 154
            +F   + P F+N VL K++
Sbjct: 111 KNFSGDEGPAFVNGVLGKLA 130


>gi|81428290|ref|YP_395290.1| transcription antitermination protein NusB [Lactobacillus sakei
           subsp. sakei 23K]
 gi|119390779|sp|Q38XV0|NUSB_LACSS RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|78609932|emb|CAI54979.1| Ribosomal RNA transcription antitermination protein NusB
           [Lactobacillus sakei subsp. sakei 23K]
          Length = 142

 Score =  132 bits (333), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 35/143 (24%), Positives = 58/143 (40%), Gaps = 4/143 (2%)

Query: 12  LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71
            +  R   R AA Q L+   +    + E+   Y+        + D E V       +   
Sbjct: 2   PNFNRHQIRQAAFQVLFT--LNANQSLELEDAYQAV--LTMDQFDAEEVTPVEVPAYLAF 57

Query: 72  IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
           ++ GV + +  +D  ++  L + W  SRL      ILR G+ E+      P +V ++E +
Sbjct: 58  LVSGVTENQAALDAALTPYLKKGWQLSRLAKPDLIILRLGLFEMQNSTEAPAKVALNEAL 117

Query: 132 CIAHDFFYGDEPKFINAVLDKVS 154
            +A  F       FIN VL K  
Sbjct: 118 ELAKQFTDDQAKGFINGVLSKFV 140


>gi|224283414|ref|ZP_03646736.1| NusB antitermination factor [Bifidobacterium bifidum NCIMB 41171]
 gi|313140569|ref|ZP_07802762.1| transcription termination factor [Bifidobacterium bifidum NCIMB
           41171]
 gi|313133079|gb|EFR50696.1| transcription termination factor [Bifidobacterium bifidum NCIMB
           41171]
          Length = 223

 Score =  132 bits (333), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 36/147 (24%), Positives = 62/147 (42%), Gaps = 12/147 (8%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           R  AR  A+  LY+ D  G     +++E              E        ++   I+ G
Sbjct: 3   RSTARKRALNTLYEADEKGQDFLSLLAERIE-----------EPGAQTPLPDYAIEIVRG 51

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
           V D ++ ID +++   +  W   R+ ++  +ILR    E+I    VP  V I E + +A 
Sbjct: 52  VADHRREIDYMLNEH-STGWKVRRMAVVDRNILRIAAWEIIFNDDVPDRVAIDEALGLAK 110

Query: 136 DFFYGDEPKFINAVLDKVSRKEEIKRS 162
               GD P FI+ +L  +    E + +
Sbjct: 111 TLSDGDSPAFIHGLLSAICDDTEGREA 137


>gi|310287767|ref|YP_003939025.1| antitermination factor NusB [Bifidobacterium bifidum S17]
 gi|309251703|gb|ADO53451.1| antitermination factor NusB [Bifidobacterium bifidum S17]
          Length = 223

 Score =  132 bits (333), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 36/147 (24%), Positives = 62/147 (42%), Gaps = 12/147 (8%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           R  AR  A+  LY+ D  G     +++E              E        ++   I+ G
Sbjct: 3   RSTARKRALNTLYEADEKGQDFLSLLAERIE-----------EPGAQTPLPDYAIEIVRG 51

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
           V D ++ ID +++   +  W   R+ ++  +ILR    E+I    VP  V I E + +A 
Sbjct: 52  VADHRREIDYMLNEH-STGWKVRRMAVVDRNILRIAAWEIIFNDDVPDRVAIDEALGLAK 110

Query: 136 DFFYGDEPKFINAVLDKVSRKEEIKRS 162
               GD P FI+ +L  +    E + +
Sbjct: 111 TLSDGDSPAFIHGLLSAICDDTEGREA 137


>gi|296875879|ref|ZP_06899940.1| transcription antitermination factor NusB [Streptococcus
           parasanguinis ATCC 15912]
 gi|296433120|gb|EFH18906.1| transcription antitermination factor NusB [Streptococcus
           parasanguinis ATCC 15912]
          Length = 143

 Score =  132 bits (333), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 39/142 (27%), Positives = 61/142 (42%), Gaps = 8/142 (5%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           R   R  A QAL  ++  G    +II   E  RF    + D+          +   ++ G
Sbjct: 10  RRELRERAFQALMALEYDG----DII---EACRFAYLHDKDIAEDKEVDLPAFLMNLVTG 62

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
           V   K  +D  I   L   W+  RL ++  +ILR G+ E+ E    P  V ++E V +A 
Sbjct: 63  VYQSKDQLDQQIGQHLKAGWTVERLTLVEKNILRLGIYEITEF-DTPQIVAVNEAVELAK 121

Query: 136 DFFYGDEPKFINAVLDKVSRKE 157
            F      +F+N VL +   +E
Sbjct: 122 AFSDEISSRFVNGVLSQFVTEE 143


>gi|206890845|ref|YP_002249638.1| transcription antitermination factor NusB [Thermodesulfovibrio
           yellowstonii DSM 11347]
 gi|226738908|sp|B5YHQ2|NUSB_THEYD RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|206742783|gb|ACI21840.1| transcription antitermination factor NusB [Thermodesulfovibrio
           yellowstonii DSM 11347]
          Length = 151

 Score =  132 bits (333), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 34/143 (23%), Positives = 65/143 (45%), Gaps = 2/143 (1%)

Query: 15  RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74
           +R  AR   +Q LY  ++   +       +         E + E     +   +   +I 
Sbjct: 2   KRRKAREYVLQFLYACEMNENTQKICNYNFLQEEIEKFWERNYEEQNSDI-KSFANQLIE 60

Query: 75  GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134
           G ++    ID +I     +KW+  R+  I  +ILR  + E++    +P +V I+E V IA
Sbjct: 61  GTIEHIDIIDKIIQKY-ADKWNIERMITIDKNILRFSIYEILYRQDIPYQVTINEAVEIA 119

Query: 135 HDFFYGDEPKFINAVLDKVSRKE 157
             +   +   FIN +LD+++++E
Sbjct: 120 KKYSTKESAAFINGILDRIAKEE 142


>gi|300741572|ref|ZP_07071593.1| transcription antitermination factor NusB [Rothia dentocariosa
           M567]
 gi|311113665|ref|YP_003984887.1| transcription antitermination factor NusB [Rothia dentocariosa ATCC
           17931]
 gi|300380757|gb|EFJ77319.1| transcription antitermination factor NusB [Rothia dentocariosa
           M567]
 gi|310945159|gb|ADP41453.1| transcription antitermination factor NusB [Rothia dentocariosa ATCC
           17931]
          Length = 136

 Score =  132 bits (333), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 37/140 (26%), Positives = 58/140 (41%), Gaps = 14/140 (10%)

Query: 14  HRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVII 73
           + R  ARL AV+ L++ D       +++     +     +              +   I+
Sbjct: 2   NSRTKARLRAVEVLFEADQRQEDIIDVLKRRRLHTAAQIS-------------AYAEEIV 48

Query: 74  HGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCI 133
            GV +    I   + +     WSF R+  +   ILR G  EL+    VP  V ISE   +
Sbjct: 49  RGVREHDDEIREYLETY-ARDWSFERMPAVDRVILRIGAWELLYNDDVPDAVAISEATGL 107

Query: 134 AHDFFYGDEPKFINAVLDKV 153
           A      D PKF+N +LDK+
Sbjct: 108 ARVLSTNDSPKFVNGLLDKL 127


>gi|319939911|ref|ZP_08014266.1| transcription antitermination protein NusB [Streptococcus anginosus
           1_2_62CV]
 gi|319810922|gb|EFW07241.1| transcription antitermination protein NusB [Streptococcus anginosus
           1_2_62CV]
          Length = 141

 Score =  132 bits (332), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 38/139 (27%), Positives = 58/139 (41%), Gaps = 8/139 (5%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           R   R  A QAL  ++             E  RF    + D+ +        +   ++ G
Sbjct: 9   RRELRERAFQALMSLEYEKDIV-------EACRFAYLYDKDMTNDSDVELPAFLLNLVMG 61

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
           V   K  +D  +S  L E W+  RL +I  +ILR G+ E+ E    P  V I+E + ++ 
Sbjct: 62  VEQSKNELDDKLSQYLKEGWTLERLTLIEKNILRLGLFEMTEF-DTPQLVAINEAIELSK 120

Query: 136 DFFYGDEPKFINAVLDKVS 154
            F      KFIN +L K  
Sbjct: 121 KFSDEKSSKFINGILSKFV 139


>gi|145588452|ref|YP_001155049.1| NusB antitermination factor [Polynucleobacter necessarius subsp.
           asymbioticus QLW-P1DMWA-1]
 gi|145046858|gb|ABP33485.1| NusB antitermination factor [Polynucleobacter necessarius subsp.
           asymbioticus QLW-P1DMWA-1]
          Length = 174

 Score =  132 bits (332), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 41/155 (26%), Positives = 67/155 (43%), Gaps = 17/155 (10%)

Query: 16  RGIARLAAVQALYQ---IDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVI 72
           R  AR  A+Q +YQ   +   G                   +L  +  +    L+ F+ I
Sbjct: 33  RRRAREYALQGVYQSLVMRRAGSLPNAA---------AIAKQLGEDPAFRRCQLDLFQGI 83

Query: 73  IHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVC 132
             GV++R   ++ +I+  L      + L  +  + L  G  EL    SVP +V I+E V 
Sbjct: 84  FDGVLERTDELEAIITPALDR--PINELSPVEHAALLIGAYELAIDLSVPYKVAINEAVE 141

Query: 133 IAHDFFYGDEPKFINAVLDKVSRKEEIKRSGCVSA 167
           +A  F   D  K++N VLD +++K    RS  + A
Sbjct: 142 LAKTFGGTDGHKYVNGVLDLLAQKL---RSAEIQA 173


>gi|85373345|ref|YP_457407.1| transcription termination factor [Erythrobacter litoralis HTCC2594]
 gi|84786428|gb|ABC62610.1| transcription termination factor [Erythrobacter litoralis HTCC2594]
          Length = 125

 Score =  132 bits (332), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 42/125 (33%), Positives = 65/125 (52%), Gaps = 2/125 (1%)

Query: 32  IIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCL 91
           +       ++ E+  +R   + E      Y   ++++F  I+ GV  R   ID L+++ L
Sbjct: 1   MEKTPLARLLDEFHQHRLGREIE--DGEHYADAEVDFFDDIVSGVDARSDEIDELVTAKL 58

Query: 92  TEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLD 151
              W+ +RLD  +  ILRAG  ELI    VP    ISEYV +A  FF   E KF+N +LD
Sbjct: 59  AAGWTLARLDKTMVQILRAGTYELIARADVPKAAAISEYVDVAKAFFDDREAKFVNGLLD 118

Query: 152 KVSRK 156
            V+++
Sbjct: 119 AVAKQ 123


>gi|117928511|ref|YP_873062.1| NusB antitermination factor [Acidothermus cellulolyticus 11B]
 gi|166215656|sp|A0LUG6|NUSB_ACIC1 RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|117648974|gb|ABK53076.1| NusB antitermination factor [Acidothermus cellulolyticus 11B]
          Length = 145

 Score =  132 bits (332), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 33/138 (23%), Positives = 58/138 (42%), Gaps = 14/138 (10%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           R  AR  A+  L++ D+      EI++++         E             +   ++ G
Sbjct: 4   RTKARKRALDVLFEADLRAADPLEILADHTARADTPVPE-------------YAVRLVEG 50

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
           V   +  ID +I       W+  R+  +  +ILR  + EL+    VP  V+++E V +A 
Sbjct: 51  VAAHRAEIDRIIEQFAV-GWTLQRMPTVDRNILRLAIYELLWVTEVPDAVVLAEAVKLAQ 109

Query: 136 DFFYGDEPKFINAVLDKV 153
           D    +   F+N VL  V
Sbjct: 110 DLSTAESAPFVNGVLAAV 127


>gi|159897280|ref|YP_001543527.1| NusB antitermination factor [Herpetosiphon aurantiacus ATCC 23779]
 gi|254772643|sp|A9AXI5|NUSB_HERA2 RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|159890319|gb|ABX03399.1| NusB antitermination factor [Herpetosiphon aurantiacus ATCC 23779]
          Length = 146

 Score =  132 bits (332), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 34/149 (22%), Positives = 68/149 (45%), Gaps = 15/149 (10%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           R   R AA+QAL+++D        +++            +  + ++     ++F  I++G
Sbjct: 10  RHRVRAAALQALFELDQTTHDLDSVVA-----------RISDDEMFSAEGRDFFARIVNG 58

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIE---CHSVPVEVIISEYVC 132
               +Q ID LI+  +   W   ++  +  ++LR  + E++        PV+ +I+E V 
Sbjct: 59  AWVNRQEIDDLIAK-IAPSWPVHQMPGVDIAVLRIALFEILYDAAADKAPVKAVINEAVE 117

Query: 133 IAHDFFYGDEPKFINAVLDKVSRKEEIKR 161
           +A  F   +  +F+N VL  V  K E + 
Sbjct: 118 LAKHFGSDNSGRFVNGVLSTVVNKPESEE 146


>gi|325963392|ref|YP_004241298.1| transcription antitermination factor NusB [Arthrobacter
           phenanthrenivorans Sphe3]
 gi|323469479|gb|ADX73164.1| transcription antitermination factor NusB [Arthrobacter
           phenanthrenivorans Sphe3]
          Length = 136

 Score =  132 bits (332), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 34/138 (24%), Positives = 60/138 (43%), Gaps = 14/138 (10%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           RG AR  A+  L++ +    S  +++                      +   +   II G
Sbjct: 4   RGKARNRALDILFEAEQRSVSAFDVLRARR-------------EKTDQIINPYTLEIIEG 50

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
           V+ ++  ID  + +  ++ WS  R+  +   ILR G  EL+    VP  V +SE V +A 
Sbjct: 51  VVSQQTAIDEFLETY-SQGWSLERMPSVDRIILRIGTWELLYNDDVPDGVAVSEAVALAK 109

Query: 136 DFFYGDEPKFINAVLDKV 153
                + P+FIN +L ++
Sbjct: 110 TLSTDESPQFINGLLGRL 127


>gi|149200420|ref|ZP_01877436.1| NusB antitermination factor [Lentisphaera araneosa HTCC2155]
 gi|149136489|gb|EDM24926.1| NusB antitermination factor [Lentisphaera araneosa HTCC2155]
          Length = 156

 Score =  132 bits (332), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 42/151 (27%), Positives = 68/151 (45%), Gaps = 4/151 (2%)

Query: 12  LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVY-LHVDLEWFR 70
             + R + R  A+Q LYQ DI      E   E+  +    +      + +       + R
Sbjct: 6   KRNPRSLGRKWALQYLYQSDIAKLEFQE--EEFALFIDQIENAPSAPNEHESSKGFAFAR 63

Query: 71  VIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEY 130
            II GV+D+ + ID  I+    + W   R+     ++LR  V EL+E  S    VI++E 
Sbjct: 64  EIIQGVLDKVKEIDAYITEE-AKNWKIDRMATTDRNVLRIAVFELMEIKSNHPVVIVNEA 122

Query: 131 VCIAHDFFYGDEPKFINAVLDKVSRKEEIKR 161
           V +A  F   D  KF+N + D ++RK   + 
Sbjct: 123 VELAKTFGNTDSFKFVNGIGDTLARKLRPEE 153


>gi|153953852|ref|YP_001394617.1| transcription antitermination protein NusB [Clostridium kluyveri
           DSM 555]
 gi|219854467|ref|YP_002471589.1| hypothetical protein CKR_1124 [Clostridium kluyveri NBRC 12016]
 gi|189035884|sp|A5N7I8|NUSB_CLOK5 RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|254772627|sp|B9E100|NUSB_CLOK1 RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|146346733|gb|EDK33269.1| NusB [Clostridium kluyveri DSM 555]
 gi|219568191|dbj|BAH06175.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 156

 Score =  131 bits (331), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 31/156 (19%), Positives = 65/156 (41%), Gaps = 10/156 (6%)

Query: 15  RRGIARLAAVQALYQIDIIGCSTTEIISEYETY---------RFCADTELDVESVYLHVD 65
            R   R   ++ L+Q+ I       IIS  +              +    +      ++D
Sbjct: 2   NRKKTRELTMKLLFQMAINKEKADVIISNLKENIEMEQGSQKNSISQIYGENMGDLKNID 61

Query: 66  LEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEV 125
           +++   ++ G+   +  +++ I   L   W  +RL  +  +IL+    E +    +P +V
Sbjct: 62  IDYVVRVLRGIEKNEDMLNIEIEKYL-RNWKLNRLSKVDSAILKICTYEFLHEDDIPEKV 120

Query: 126 IISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKR 161
            I+E + +A  +       FIN VL  + + E+IK+
Sbjct: 121 SINEAIELAKKYSSEKSASFINGVLGNMIKDEKIKK 156


>gi|312868252|ref|ZP_07728452.1| transcription antitermination factor NusB [Streptococcus
           parasanguinis F0405]
 gi|311095997|gb|EFQ54241.1| transcription antitermination factor NusB [Streptococcus
           parasanguinis F0405]
          Length = 143

 Score =  131 bits (331), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 36/142 (25%), Positives = 58/142 (40%), Gaps = 8/142 (5%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           R   R  A Q+L  ++  G          E  RF    + D+          +   ++ G
Sbjct: 10  RRDLRERAFQSLMALEYDGDIV-------EACRFAYLHDKDLAEDKEVDLPAFLMNLVTG 62

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
           V   K  +D  I   L   W+  RL ++  +ILR G+ E+ E    P  V ++E V +A 
Sbjct: 63  VYQSKDQLDQQIGQHLKTGWTVERLTLVEKNILRLGIYEITEF-DTPQIVAVNEAVELAK 121

Query: 136 DFFYGDEPKFINAVLDKVSRKE 157
            F      +F+N VL +   +E
Sbjct: 122 AFSDETSSRFVNGVLSQFVTEE 143


>gi|308276510|gb|ADO26409.1| N utilization substance protein B (Protein nusB) [Corynebacterium
           pseudotuberculosis I19]
          Length = 210

 Score =  131 bits (331), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 37/155 (23%), Positives = 66/155 (42%), Gaps = 7/155 (4%)

Query: 8   KDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLE 67
           +  K    R  AR  A + LY+ ++       II +     +  D  +   +        
Sbjct: 23  RGRKRHGSRYKARRRAAEVLYEAEVRDVDPVAIIEDRIALSYHQDLGVAPVA-------A 75

Query: 68  WFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVII 127
           + + I+ G       ID LI++ L E W   R+  +  ++LR  V ELI    VPV   +
Sbjct: 76  YTKEIVAGTAQELDRIDGLIAANLAENWELERISAVDRAVLRVAVWELIFNEDVPVATAV 135

Query: 128 SEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRS 162
            + V +   +     P ++NA+LD +++  E  R+
Sbjct: 136 VDGVELVSQYSTDVAPAYVNALLDSIAQNIESHRA 170


>gi|322387215|ref|ZP_08060825.1| N utilization substance protein B [Streptococcus infantis ATCC
           700779]
 gi|321141744|gb|EFX37239.1| N utilization substance protein B [Streptococcus infantis ATCC
           700779]
          Length = 140

 Score =  131 bits (331), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 34/143 (23%), Positives = 60/143 (41%), Gaps = 11/143 (7%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           R   R  A QAL  ++         I     + +  D E D   +       +   ++ G
Sbjct: 9   RRELRKCAFQALMSLEYGSD-----IETACRFAYTHDREDDEVKL-----PSFLIDLVSG 58

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
           V  +K+ +D  I+  L   W+  RL ++  ++LR GV E+      P  V ++E + +A 
Sbjct: 59  VQAQKEELDKQITQHLKSGWTIERLTLVEKNLLRLGVFEITSF-DTPQLVAVNEAIELAK 117

Query: 136 DFFYGDEPKFINAVLDKVSRKEE 158
            F      +FIN +L +   +E 
Sbjct: 118 SFSDQKSARFINGLLSQFVTEEN 140


>gi|32473208|ref|NP_866202.1| transcription antitermination protein NusB [Rhodopirellula baltica
           SH 1]
 gi|39931772|sp|Q7USA9|NUSB_RHOBA RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|32397887|emb|CAD73888.1| probable N utilization substance protein B homolog [Rhodopirellula
           baltica SH 1]
 gi|327540459|gb|EGF27044.1| transcription antitermination protein NusB [Rhodopirellula baltica
           WH47]
          Length = 145

 Score =  131 bits (331), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 36/145 (24%), Positives = 67/145 (46%), Gaps = 13/145 (8%)

Query: 11  KLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFR 70
           ++S RR  AR   +Q LY+ D+          ++   R               V  ++  
Sbjct: 4   RMSTRRR-AREIVLQLLYEADLNDWRDAATSRKFIRSRLQG----------RKVLTDFAA 52

Query: 71  VIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEY 130
            ++ G M R+  ID  ++  L+  W+  R+ +   ++LR G  E++     P +V ISE 
Sbjct: 53  ELLDGTMARRDDIDAKLTK-LSTNWALHRMPVTDRNVLRLGAYEILYSG-TPGQVAISEA 110

Query: 131 VCIAHDFFYGDEPKFINAVLDKVSR 155
           + +A  +   + P+FIN VLD++ +
Sbjct: 111 LTLAKRYGGENSPRFINGVLDRLFK 135


>gi|311742352|ref|ZP_07716161.1| transcription antitermination factor NusB [Aeromicrobium marinum
           DSM 15272]
 gi|311313980|gb|EFQ83888.1| transcription antitermination factor NusB [Aeromicrobium marinum
           DSM 15272]
          Length = 136

 Score =  131 bits (331), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 31/139 (22%), Positives = 56/139 (40%), Gaps = 14/139 (10%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           R   R  A+  L++ ++ G      ++E                        +   ++ G
Sbjct: 4   RTKYRKRALDVLFESELQGLEAGGSLTERLVTNEPPIN-------------PYTVTLVEG 50

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
           V   +  ID +IS      W+  R+  +  ++LR G+ E++    VP  V +SE V +A 
Sbjct: 51  VAGTRDRIDAIISEH-AHGWTLDRMPAVDRNLLRLGIYEILYVDDVPDAVAVSEAVSLAQ 109

Query: 136 DFFYGDEPKFINAVLDKVS 154
           +    +   F+N VL KV 
Sbjct: 110 ELSTDESASFVNGVLSKVV 128


>gi|254458717|ref|ZP_05072141.1| transcription antitermination factor NusB [Campylobacterales
           bacterium GD 1]
 gi|207084483|gb|EDZ61771.1| transcription antitermination factor NusB [Campylobacterales
           bacterium GD 1]
          Length = 134

 Score =  131 bits (331), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 41/142 (28%), Positives = 60/142 (42%), Gaps = 13/142 (9%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           R  AR+A V  LY  D+   S  +   E    +   + + D           +   +  G
Sbjct: 4   RHHARMAVVSLLYAYDLGNGSIADHTDEILEEKKIRNKQKD-----------FALALFEG 52

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
           VM+  +  D  I   L E W F RL  I  + LR    E++    +   V+I+E V I  
Sbjct: 53  VMENLEACDKAIIEHLKE-WDFERLGAIERATLRLATYEILFG-ELDSAVVINEAVEITK 110

Query: 136 DFFYGDEPKFINAVLDKVSRKE 157
            F     PKFIN VLD +S+ +
Sbjct: 111 AFGTEQSPKFINGVLDAISKDK 132


>gi|114566114|ref|YP_753268.1| hypothetical protein Swol_0564 [Syntrophomonas wolfei subsp. wolfei
           str. Goettingen]
 gi|119390841|sp|Q0AZF7|NUSB_SYNWW RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|114337049|gb|ABI67897.1| NusB antitermination factor [Syntrophomonas wolfei subsp. wolfei
           str. Goettingen]
          Length = 134

 Score =  131 bits (331), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 29/143 (20%), Positives = 61/143 (42%), Gaps = 12/143 (8%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           R  AR  A + ++Q+D +     +       +   A+               +   +I G
Sbjct: 3   RRKARETAFKVVFQVDQVQADAKKAFDYLVLHDKLAEKNQG-----------FSWDLIQG 51

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
            ++++  ID +I+S  + +W+  R+  +  +I+R    E++        V I E + IA 
Sbjct: 52  TLEKQAEIDQMIASY-SREWALDRMSSVDRNIMRVAAYEILYLEDSQAVVAIDEAIEIAK 110

Query: 136 DFFYGDEPKFINAVLDKVSRKEE 158
            +       F+NA+LDK+  ++ 
Sbjct: 111 KYGDEGSGSFVNAILDKILGEKN 133


>gi|87308019|ref|ZP_01090161.1| probable N utilization substance protein B-like [Blastopirellula
           marina DSM 3645]
 gi|87289101|gb|EAQ80993.1| probable N utilization substance protein B-like [Blastopirellula
           marina DSM 3645]
          Length = 137

 Score =  131 bits (330), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 35/145 (24%), Positives = 66/145 (45%), Gaps = 12/145 (8%)

Query: 14  HRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVII 73
            +R   R   +Q LYQ D+   +   +   +   R     +L          + + R ++
Sbjct: 2   SKRSRVREVVLQILYQEDLNPEADIGVSERFLRGRLKHTEDL----------VAFGRSLL 51

Query: 74  HGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCI 133
            GV   ++ ID  I +   E WS +R+ +   ++LR G  E++     P  V I+E V +
Sbjct: 52  VGVRLHRKAIDAKIEAF-AENWSLARMAVTDRNVLRIGAFEILFS-ETPDRVAINEAVEL 109

Query: 134 AHDFFYGDEPKFINAVLDKVSRKEE 158
           +  F     P+F+N +LD+V + ++
Sbjct: 110 SKRFGSKHSPQFVNGLLDRVLKSKQ 134


>gi|229817326|ref|ZP_04447608.1| hypothetical protein BIFANG_02588 [Bifidobacterium angulatum DSM
           20098]
 gi|229785115|gb|EEP21229.1| hypothetical protein BIFANG_02588 [Bifidobacterium angulatum DSM
           20098]
          Length = 137

 Score =  131 bits (330), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 36/143 (25%), Positives = 58/143 (40%), Gaps = 12/143 (8%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           R  AR  A+  LY+ D  G     ++ E                       E+   I+ G
Sbjct: 3   RSTARKRALNTLYEADEKGQDILSLLEERIAVPGAQTPLP-----------EYAIEIVRG 51

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
           V + ++ ID  +  C +  W  SR+ ++  +ILR    E++    VP  V I E + +A 
Sbjct: 52  VAEHRRDIDEKLDEC-STGWKISRMGVVDRNILRIAAWEIMYNDEVPDRVAIDEALGLAK 110

Query: 136 DFFYGDEPKFINAVLDKVSRKEE 158
               G+ P FI+ +L  V    E
Sbjct: 111 TLCDGESPAFIHGLLSAVCTAHE 133


>gi|219847234|ref|YP_002461667.1| NusB antitermination factor [Chloroflexus aggregans DSM 9485]
 gi|254772623|sp|B8G2S7|NUSB_CHLAD RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|219541493|gb|ACL23231.1| NusB antitermination factor [Chloroflexus aggregans DSM 9485]
          Length = 150

 Score =  131 bits (330), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 32/156 (20%), Positives = 73/156 (46%), Gaps = 14/156 (8%)

Query: 10  LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF 69
           ++L+ +R   R+AA+Q L+++D    +  +++    T           +        E+ 
Sbjct: 4   VRLASQRHRVRIAALQILFEVDETDHAIDQVLERRLT-----------DEPMSAESAEFL 52

Query: 70  RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELI--ECHSVPVEVII 127
           R ++ G  + + ++D +I       W  +++  +  ++LR  + EL+  E    P++ +I
Sbjct: 53  RRLVFGTWEHRSYLDRIIEEA-APNWPVNQMPGVDKAVLRIALFELLIDEVEKTPIKAVI 111

Query: 128 SEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRSG 163
           +E V +A +F   +  +F+N VL  V  +   +R  
Sbjct: 112 NEAVELAKEFGSDNSSRFVNGVLGTVVTRYLAEREA 147


>gi|300934532|ref|ZP_07149788.1| transcription antitermination protein NusB [Corynebacterium
           resistens DSM 45100]
          Length = 204

 Score =  131 bits (330), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 36/153 (23%), Positives = 65/153 (42%), Gaps = 7/153 (4%)

Query: 3   IQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYL 62
           + ++  + +    R  AR  AV  +++ +       +I+ E               +  +
Sbjct: 1   MSEDIINYRRHGSRFKARRRAVDIIFEAEFRDLDPVKIVEERVELA-------KDPANAV 53

Query: 63  HVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVP 122
               E+   I+ G       ID  IS  L  +W   RL  +  ++LR    EL+    VP
Sbjct: 54  KPVPEYTATIVEGTATNLDAIDDAISMNLASEWRLDRLPAVDRAVLRVAAWELLFNDEVP 113

Query: 123 VEVIISEYVCIAHDFFYGDEPKFINAVLDKVSR 155
            +V ++E + +A  + +   P ++NAVLD VSR
Sbjct: 114 NQVAMTEGIELAAQYSHDKAPAYVNAVLDGVSR 146


>gi|300858556|ref|YP_003783539.1| N utilization substance protein B-like protein [Corynebacterium
           pseudotuberculosis FRC41]
 gi|300686010|gb|ADK28932.1| N utilization substance protein B-like protein [Corynebacterium
           pseudotuberculosis FRC41]
 gi|302206268|gb|ADL10610.1| N utilization substance protein B (Protein nusB) [Corynebacterium
           pseudotuberculosis C231]
 gi|302330826|gb|ADL21020.1| N utilization substance protein B (Protein nusB) [Corynebacterium
           pseudotuberculosis 1002]
          Length = 208

 Score =  131 bits (330), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 37/155 (23%), Positives = 66/155 (42%), Gaps = 7/155 (4%)

Query: 8   KDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLE 67
           +  K    R  AR  A + LY+ ++       II +     +  D  +   +        
Sbjct: 21  RGRKRHGSRYKARRRAAEVLYEAEVRDVDPVAIIEDRIALSYHQDLGVAPVA-------A 73

Query: 68  WFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVII 127
           + + I+ G       ID LI++ L E W   R+  +  ++LR  V ELI    VPV   +
Sbjct: 74  YTKEIVAGTAQELDRIDGLIAANLAENWELERISAVDRAVLRVAVWELIFNEDVPVATAV 133

Query: 128 SEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRS 162
            + V +   +     P ++NA+LD +++  E  R+
Sbjct: 134 VDGVELVSQYSTDVAPAYVNALLDSIAQNIESHRA 168


>gi|225166064|ref|ZP_03727805.1| NusB antitermination factor [Opitutaceae bacterium TAV2]
 gi|224799698|gb|EEG18186.1| NusB antitermination factor [Opitutaceae bacterium TAV2]
          Length = 154

 Score =  131 bits (330), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 38/155 (24%), Positives = 73/155 (47%), Gaps = 15/155 (9%)

Query: 14  HRRGIARLAAVQALYQIDII-GCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVI 72
            +R  +R+AA+Q L+   +    + +E +  +       +T+      Y + D      +
Sbjct: 7   AQRRDSRVAAMQYLFAWSMNAPQNLSEDLRAF------YETQEHPREHYAYAD-----EV 55

Query: 73  IHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVC 132
           + GV+     ID  I + L + W F R+  I  +ILR  + E+I    VP  V I+E + 
Sbjct: 56  VDGVIRNLVEIDARIRT-LAQNWEFDRIARIDLTILRVAIYEMIFRKDVPPVVSINEAIN 114

Query: 133 IAHDFFYGDEPKFINAVLDKVSRKEEIKRSGCVSA 167
           ++  +   D  +FIN +LD++  K+++ R    + 
Sbjct: 115 LSKTYSNSDAKRFINGILDRL--KDQLGRDARKAG 147


>gi|182417973|ref|ZP_02949281.1| transcription antitermination factor NusB [Clostridium butyricum
           5521]
 gi|237668086|ref|ZP_04528070.1| transcription antitermination factor NusB [Clostridium butyricum E4
           str. BoNT E BL5262]
 gi|182378144|gb|EDT75679.1| transcription antitermination factor NusB [Clostridium butyricum
           5521]
 gi|237656434|gb|EEP53990.1| transcription antitermination factor NusB [Clostridium butyricum E4
           str. BoNT E BL5262]
          Length = 131

 Score =  131 bits (330), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 33/139 (23%), Positives = 61/139 (43%), Gaps = 10/139 (7%)

Query: 15  RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74
            R ++R  A++  + +     +  E +  +           + E     +DL + +  + 
Sbjct: 2   NRKLSREKAMELFFGMTCSKDTVEEAVETFID---------NYEGDIKELDLTYIKKALI 52

Query: 75  GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134
           G+ + K+ ID  ISS L + W   R+  +  +ILR    E++    VP  V I+E + I 
Sbjct: 53  GIENNKEAIDEAISSNL-QNWKIDRISKVNLTILRLAAYEILFDEEVPRSVAINEALEIT 111

Query: 135 HDFFYGDEPKFINAVLDKV 153
             +       F+N VLDK+
Sbjct: 112 RKYSDEKSVSFVNGVLDKI 130


>gi|322377045|ref|ZP_08051537.1| transcription antitermination factor NusB [Streptococcus sp. M334]
 gi|321281758|gb|EFX58766.1| transcription antitermination factor NusB [Streptococcus sp. M334]
          Length = 139

 Score =  131 bits (330), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 33/142 (23%), Positives = 60/142 (42%), Gaps = 11/142 (7%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           R   R  A QAL  ++  G             RF    + +   V +     +   ++ G
Sbjct: 9   RRELRKCAFQALMSLEF-GTDVET------ACRFAYTHDREDADVQIPA---FLLNLVSG 58

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
           V  +K  +D  I+  L   W+  RL ++  ++LR G+ E+      P  V ++E + +A 
Sbjct: 59  VQAQKDELDKQINQHLKSGWTVERLTLVEKNLLRLGIFEITSF-DTPQLVAVNEAIELAK 117

Query: 136 DFFYGDEPKFINAVLDKVSRKE 157
           +F      +FIN +L +   +E
Sbjct: 118 NFSDQKSARFINGLLSQFVTEE 139


>gi|154487009|ref|ZP_02028416.1| hypothetical protein BIFADO_00847 [Bifidobacterium adolescentis
           L2-32]
 gi|154084872|gb|EDN83917.1| hypothetical protein BIFADO_00847 [Bifidobacterium adolescentis
           L2-32]
          Length = 147

 Score =  131 bits (330), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 35/144 (24%), Positives = 56/144 (38%), Gaps = 12/144 (8%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           R  AR  A+  LY+ D  G     +++E            D           +   I+ G
Sbjct: 3   RSTARKRALNTLYEADEKGQDILSLLAERIEQPGAQTPLPD-----------YAIEIVRG 51

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
           V +    ID ++    +  W   R+ ++  +ILR    E++    VP  V I E + +A 
Sbjct: 52  VAEHIAAIDAMLDEH-STGWKVKRMGVVDRNILRIAAWEIMFNDDVPNMVAIDEALSLAK 110

Query: 136 DFFYGDEPKFINAVLDKVSRKEEI 159
                D P FI+ +L  VS   E 
Sbjct: 111 TLCDDDSPAFIHGLLSAVSADAEA 134


>gi|153814701|ref|ZP_01967369.1| hypothetical protein RUMTOR_00916 [Ruminococcus torques ATCC 27756]
 gi|317500231|ref|ZP_07958461.1| transcription antitermination factor NusB [Lachnospiraceae
           bacterium 8_1_57FAA]
 gi|331087539|ref|ZP_08336471.1| transcription antitermination factor NusB [Lachnospiraceae
           bacterium 3_1_46FAA]
 gi|145847732|gb|EDK24650.1| hypothetical protein RUMTOR_00916 [Ruminococcus torques ATCC 27756]
 gi|316898357|gb|EFV20398.1| transcription antitermination factor NusB [Lachnospiraceae
           bacterium 8_1_57FAA]
 gi|330401757|gb|EGG81335.1| transcription antitermination factor NusB [Lachnospiraceae
           bacterium 3_1_46FAA]
          Length = 135

 Score =  131 bits (330), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 34/142 (23%), Positives = 63/142 (44%), Gaps = 10/142 (7%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           R   R    + L+QI+         +   E   +  +T  D +      D ++ +     
Sbjct: 3   RTELREHIFKMLFQIEFNDS-----VDMPENLNYYFETLEDAK----EKDKQYIQNKYEA 53

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
           ++   + ID L++   T  W  +R++ +  SILR  + E+     VP +V I+E V +A 
Sbjct: 54  ILSHIEEIDGLLNENAT-GWKTTRMNKVDLSILRLALYEIKWDEDVPAKVAINEAVELAK 112

Query: 136 DFFYGDEPKFINAVLDKVSRKE 157
            F   +   F+N VL K +++E
Sbjct: 113 RFGGDNSSSFVNGVLAKFAKQE 134


>gi|310829051|ref|YP_003961408.1| antitermination protein NusB [Eubacterium limosum KIST612]
 gi|308740785|gb|ADO38445.1| antitermination protein NusB [Eubacterium limosum KIST612]
          Length = 152

 Score =  130 bits (329), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 40/145 (27%), Positives = 69/145 (47%), Gaps = 3/145 (2%)

Query: 10  LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF 69
           +     R   R  A++ ++QID         +       F    + D E     +   + 
Sbjct: 1   MSRKMNRKEERELALRGIFQIDFHAEDAE--LDTSLKNFFELAGQGDPEDEVSGMTGGYA 58

Query: 70  RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISE 129
           + +I+  ++ +  ID LI+S L E W FSR+  +  +ILR GV EL+    VP EV I+E
Sbjct: 59  KKVINAALENQGAIDALIASHLKETWDFSRVPKMEKAILRLGVTELLYTK-VPKEVAINE 117

Query: 130 YVCIAHDFFYGDEPKFINAVLDKVS 154
            V +A  +   +   +IN +L++V+
Sbjct: 118 AVELAKKYASEESKTYINGILNRVA 142


>gi|317481639|ref|ZP_07940674.1| transcription antitermination factor NusB [Bifidobacterium sp.
           12_1_47BFAA]
 gi|322689608|ref|YP_004209342.1| transcription antitermination factor NusB [Bifidobacterium longum
           subsp. infantis 157F]
 gi|316916929|gb|EFV38316.1| transcription antitermination factor NusB [Bifidobacterium sp.
           12_1_47BFAA]
 gi|320460944|dbj|BAJ71564.1| transcription antitermination factor NusB [Bifidobacterium longum
           subsp. infantis 157F]
          Length = 190

 Score =  130 bits (329), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 32/138 (23%), Positives = 56/138 (40%), Gaps = 12/138 (8%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           R  AR  A+  LY+ D        ++ E   +        D           +   I+ G
Sbjct: 3   RSTARKRALNTLYEADEKSQDILSLLDERIAHPGAQTPLPD-----------YAIEIVKG 51

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
           V + ++ ID+ +    +  W   R+ ++  +ILR    E++    VP +V I E + +A 
Sbjct: 52  VAEHRRQIDMTLDEH-STGWKVRRMGVVDRNILRIAAWEILFNDDVPDKVAIDEALALAK 110

Query: 136 DFFYGDEPKFINAVLDKV 153
                D P FI+ +L  V
Sbjct: 111 TLCDDDSPAFIHGLLSAV 128


>gi|307706079|ref|ZP_07642898.1| transcription antitermination factor NusB [Streptococcus mitis
           SK321]
 gi|307618479|gb|EFN97627.1| transcription antitermination factor NusB [Streptococcus mitis
           SK321]
          Length = 139

 Score =  130 bits (329), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 31/142 (21%), Positives = 60/142 (42%), Gaps = 11/142 (7%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           R   R  A QAL  ++    +  E    +       D ++ +          +   ++ G
Sbjct: 9   RRELRKCAFQALMSLEFG--TDMETACHFAYTHDREDADVQIP--------AFLLNLVSG 58

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
           V  +K  +D  I+  L   W+  RL ++  ++LR G+ E+      P  V ++E + +A 
Sbjct: 59  VQAQKDELDKQINQHLKSGWTVERLTLVEKNLLRLGIFEITSF-DTPQLVAVNEAIELAK 117

Query: 136 DFFYGDEPKFINAVLDKVSRKE 157
           +F      +FIN +L +   +E
Sbjct: 118 NFSDQKSARFINGLLSQFVTEE 139


>gi|305681487|ref|ZP_07404294.1| transcription antitermination factor NusB [Corynebacterium
           matruchotii ATCC 14266]
 gi|305659692|gb|EFM49192.1| transcription antitermination factor NusB [Corynebacterium
           matruchotii ATCC 14266]
          Length = 312

 Score =  130 bits (329), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 38/135 (28%), Positives = 59/135 (43%), Gaps = 7/135 (5%)

Query: 24  VQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHI 83
           V  LY+ +        I+ +             V+   +     +   II GV +    I
Sbjct: 34  VDVLYEAEARDVDPVAIVEDRINLA-------RVDITLVAPIAAYTSEIIAGVAEELNRI 86

Query: 84  DLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEP 143
           D +I+  L E W  SR+  +  +ILR  V E+I    VPV+  +SE V +A  +     P
Sbjct: 87  DDVIAEYLAENWELSRISAVDRAILRVAVWEMIFNPDVPVKTALSEAVELASQYSGASAP 146

Query: 144 KFINAVLDKVSRKEE 158
            +INAVLD V +  +
Sbjct: 147 AYINAVLDSVVKNID 161


>gi|307708254|ref|ZP_07644721.1| transcription antitermination factor NusB [Streptococcus mitis NCTC
           12261]
 gi|307615700|gb|EFN94906.1| transcription antitermination factor NusB [Streptococcus mitis NCTC
           12261]
          Length = 141

 Score =  130 bits (329), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 31/143 (21%), Positives = 60/143 (41%), Gaps = 11/143 (7%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           R   R  A QAL  ++    +  E    +       D ++ +          +   ++ G
Sbjct: 9   RRELRKCAFQALMSLEFG--TDMETACHFAYTHDREDEDVQIP--------AFLLNLVSG 58

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
           V  +K  +D  I+  L   W+  RL ++  ++LR G+ E+      P  V ++E + +A 
Sbjct: 59  VQAQKDELDKQINQHLKSGWTVERLTLVEKNLLRLGIFEITSF-DTPQLVAVNEAIELAK 117

Query: 136 DFFYGDEPKFINAVLDKVSRKEE 158
           +F      +FIN +L +   +E 
Sbjct: 118 NFSDQKSARFINGLLSQFVTEEN 140


>gi|90961508|ref|YP_535424.1| transcription antitermination protein NusB [Lactobacillus
           salivarius UCC118]
 gi|227890595|ref|ZP_04008400.1| transcription antitermination protein NusB [Lactobacillus
           salivarius ATCC 11741]
 gi|119390778|sp|Q1WUJ4|NUSB_LACS1 RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|90820702|gb|ABD99341.1| N utilization substance protein B [Lactobacillus salivarius UCC118]
 gi|227867533|gb|EEJ74954.1| transcription antitermination protein NusB [Lactobacillus
           salivarius ATCC 11741]
          Length = 131

 Score =  130 bits (329), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 34/142 (23%), Positives = 60/142 (42%), Gaps = 12/142 (8%)

Query: 12  LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71
           +S  R   R  A Q L+ +   G +      +        D            DL +   
Sbjct: 1   MSLSRHDIRKIAFQTLFAL---GSNPDANSEDIYQELLDEDNN--------DSDLSYLNE 49

Query: 72  IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
           ++ GV+D +  ID+ I+  L + W+  RL+     ILR  + E+     V  ++ ++E V
Sbjct: 50  LVDGVLDHQSEIDMEITKYLRKNWNIGRLNKTDLIILRIAIFEIKYS-DVASKIAVNEAV 108

Query: 132 CIAHDFFYGDEPKFINAVLDKV 153
            +A +F      KF+NA+L  +
Sbjct: 109 ELAKEFSDDKSYKFVNAILQNL 130


>gi|240013567|ref|ZP_04720480.1| transcription antitermination protein NusB [Neisseria gonorrhoeae
           DGI18]
 gi|240016006|ref|ZP_04722546.1| transcription antitermination protein NusB [Neisseria gonorrhoeae
           FA6140]
 gi|240120636|ref|ZP_04733598.1| transcription antitermination protein NusB [Neisseria gonorrhoeae
           PID24-1]
          Length = 161

 Score =  130 bits (329), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 43/163 (26%), Positives = 63/163 (38%), Gaps = 18/163 (11%)

Query: 2   TIQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVY 61
             +  +K +K + RR   R  AVQA+YQ  I   +  EI              +   S +
Sbjct: 13  PNRFKEKIMKTTRRRS--RELAVQAVYQSLINRTAAPEIA-----------KNIREMSDF 59

Query: 62  LHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSV 121
              D E F  +  G           I   L        L+ I  ++L     EL      
Sbjct: 60  AKADEELFNKLFFGTQTNAADYIQKIRPLLDRDEK--DLNPIERAVLLTACHELSAMPET 117

Query: 122 PVEVIISEYVCIAHDFFYGDEPKFINAVLDKVS---RKEEIKR 161
           P  VII+E + +   F   D  KF+N +LDK++   R +E KR
Sbjct: 118 PYPVIINEAIEVTKTFGGTDGHKFVNGILDKLAAQIRPDEPKR 160


>gi|260588123|ref|ZP_05854036.1| transcription antitermination factor NusB [Blautia hansenii DSM
           20583]
 gi|260541650|gb|EEX22219.1| transcription antitermination factor NusB [Blautia hansenii DSM
           20583]
          Length = 135

 Score =  130 bits (328), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 34/142 (23%), Positives = 59/142 (41%), Gaps = 10/142 (7%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           R   R    + L+  +     T E+  + + Y          E  Y+             
Sbjct: 3   RREMREHIFKLLFLGEFN--ETAEMPEQIQLYFEGLSDLQPTEQAYMENKYAL------- 53

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
           V +  + ID L++   +  W   R+  +  +ILR  V E+     VPV+V I+E V I+ 
Sbjct: 54  VKEHLEEIDALLNEK-SAGWKTKRMSKVDLNILRLAVYEMKYDEDVPVKVAINEAVEISK 112

Query: 136 DFFYGDEPKFINAVLDKVSRKE 157
            F   D   F+N +L K++R++
Sbjct: 113 SFGGDDSASFVNGILGKIARED 134


>gi|304440279|ref|ZP_07400169.1| transcription antitermination factor NusB [Peptoniphilus duerdenii
           ATCC BAA-1640]
 gi|304371328|gb|EFM24944.1| transcription antitermination factor NusB [Peptoniphilus duerdenii
           ATCC BAA-1640]
          Length = 135

 Score =  130 bits (328), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 46/141 (32%), Positives = 69/141 (48%), Gaps = 13/141 (9%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           R +AR   ++ LYQ+DI    + E +  Y       + E           +E+ R  I G
Sbjct: 3   RRVARRGLMKLLYQMDINEDYSDEALDFYFENSDLKEDE-----------VEFIREHISG 51

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
           ++D+ + ID +I S L E WS  R+  I   ILR  V EL    S    ++I+E V IA 
Sbjct: 52  MIDKFEEIDEIIKSNL-EGWSLERISNIDRQILRIAVYEL-YFTSTASNIVINEAVEIAR 109

Query: 136 DFFYGDEPKFINAVLDKVSRK 156
           ++   + PKFIN +L  + RK
Sbjct: 110 EYSSNEAPKFINGILGTIFRK 130


>gi|325682729|ref|ZP_08162245.1| N utilization substance protein B [Lactobacillus reuteri MM4-1A]
 gi|324977079|gb|EGC14030.1| N utilization substance protein B [Lactobacillus reuteri MM4-1A]
          Length = 132

 Score =  130 bits (328), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 32/142 (22%), Positives = 57/142 (40%), Gaps = 12/142 (8%)

Query: 20  RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79
           R  A Q L+ +     S  +I + YE      + ++            +   +++GV + 
Sbjct: 3   REEAFQVLFALQ--SDSEADIQTVYEAIPHHDEKQIP----------PYLLTLVNGVREH 50

Query: 80  KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139
           +  +D  I+  L   W+ +RL      ILR  + E+    +VP  V I+E + +   F  
Sbjct: 51  QDQLDEQINDLLASGWTINRLAKPDLVILRLALFEIQYAENVPTVVAINEALELTKTFSS 110

Query: 140 GDEPKFINAVLDKVSRKEEIKR 161
               KFIN  L K  ++     
Sbjct: 111 DKSRKFINGALGKFEKQVNENN 132


>gi|309799755|ref|ZP_07693969.1| transcription antitermination factor NusB [Streptococcus infantis
           SK1302]
 gi|308116621|gb|EFO54083.1| transcription antitermination factor NusB [Streptococcus infantis
           SK1302]
          Length = 140

 Score =  130 bits (328), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 34/143 (23%), Positives = 63/143 (44%), Gaps = 11/143 (7%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           R   R  A QAL  ++    S  E    +       DT++ + +        +   ++ G
Sbjct: 9   RRELRKCAFQALMSLEYG--SDLETACRFAYTHDREDTDVQLPN--------FLVELVSG 58

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
           V  +K  +D  I+  L   W+ +RL ++  ++LR GV E+      P  V ++E + +A 
Sbjct: 59  VQAKKDDLDKQITQHLKTGWTINRLTLVEKNLLRLGVFEITSF-DTPQLVAVNEAIELAK 117

Query: 136 DFFYGDEPKFINAVLDKVSRKEE 158
            F      +FIN +L +   +E+
Sbjct: 118 SFSDQKSARFINGLLSQFVTEED 140


>gi|259046624|ref|ZP_05737025.1| N utilization substance protein B [Granulicatella adiacens ATCC
           49175]
 gi|259036789|gb|EEW38044.1| N utilization substance protein B [Granulicatella adiacens ATCC
           49175]
          Length = 153

 Score =  130 bits (328), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 36/155 (23%), Positives = 71/155 (45%), Gaps = 11/155 (7%)

Query: 6   NKKDLKLSHRRGIARLAAVQALYQIDIIG-----CSTTEIISEYETYRFCADTELDVESV 60
           ++K LK    R   R+ A+QALYQ+D+        + +  +   E   + +D   + + +
Sbjct: 2   SRKPLK----RRALRVLAIQALYQLDMTPEMHIVDALSLALECSEDSPYSSDAITEEDLI 57

Query: 61  YLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECH- 119
               ++ +   ++ GV +  + ID LI    +++W  +R+  +   I+R  + E+     
Sbjct: 58  NEVPEIAYSIALVRGVQNNLEKIDGLIEKH-SKRWKLNRIVRLDLIIMRVAIFEMTSPEL 116

Query: 120 SVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVS 154
            VP  V ++E + IA  +      KFIN +L    
Sbjct: 117 EVPQTVALNEAIEIAKTYSDEKSAKFINGILSNFV 151


>gi|182413526|ref|YP_001818592.1| NusB antitermination factor [Opitutus terrae PB90-1]
 gi|177840740|gb|ACB74992.1| NusB antitermination factor [Opitutus terrae PB90-1]
          Length = 147

 Score =  130 bits (328), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 38/152 (25%), Positives = 67/152 (44%), Gaps = 15/152 (9%)

Query: 14  HRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVD-LEWFRVI 72
            +R   R+AA+Q L+   +                   D  +  E++    D   +   +
Sbjct: 7   AQRRDGRVAALQYLFAWSMN-----------RPRNLAEDLRVFFENMEQPRDHYAFGEEL 55

Query: 73  IHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVC 132
           IHGV++    ID  I   L   W F R+  I  +ILR  + E++    +P  V I+E + 
Sbjct: 56  IHGVIEHSDDIDARIKG-LAHNWEFDRIAKIDLTILRLAIFEILHRKDIPPVVSINEAID 114

Query: 133 IAHDFFYGDEPKFINAVLDKVSRKEEIKRSGC 164
           ++  F   D  +FIN +LD++  K+++ R   
Sbjct: 115 LSKQFSNADAKRFINGILDRL--KDQVGRDAR 144


>gi|322391457|ref|ZP_08064926.1| N utilization substance protein B [Streptococcus peroris ATCC
           700780]
 gi|321145540|gb|EFX40932.1| N utilization substance protein B [Streptococcus peroris ATCC
           700780]
          Length = 140

 Score =  130 bits (328), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 33/139 (23%), Positives = 58/139 (41%), Gaps = 11/139 (7%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           R   R  A QAL  ++         I     + +  D E D   +       +   ++ G
Sbjct: 9   RRELRKCAFQALMSLEYGSD-----IETACRFAYTHDREDDEVKL-----PSFLINLVTG 58

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
           V  +K+ +D  I+  L   W+  RL ++  ++LR GV E+      P  V ++E + +A 
Sbjct: 59  VQAQKEELDKQITQHLKAGWTIDRLTLVEKNLLRLGVFEITSF-DTPQLVAVNEAIELAK 117

Query: 136 DFFYGDEPKFINAVLDKVS 154
            F      +FIN +L +  
Sbjct: 118 SFSDQKSARFINGLLSQFV 136


>gi|302872150|ref|YP_003840786.1| NusB antitermination factor [Caldicellulosiruptor obsidiansis OB47]
 gi|302575009|gb|ADL42800.1| NusB antitermination factor [Caldicellulosiruptor obsidiansis OB47]
          Length = 136

 Score =  130 bits (328), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 42/139 (30%), Positives = 71/139 (51%), Gaps = 8/139 (5%)

Query: 24  VQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHI 83
           ++ LY          +II  Y+ +R     EL+    +  VD ++   ++ GV+  +Q I
Sbjct: 1   MKILYAYRFENMQ-QDIIEFYKRFR-----ELNQNEDFKDVDEKYLEKLLKGVIQNQQII 54

Query: 84  DLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEP 143
           D LI+   ++ W  +RL M+   ++R  V EL+    VPV V I E V +A  F     P
Sbjct: 55  DNLIAKY-SKDWPLNRLPMVELELMRIAVYELLFEEDVPVSVAIDEAVDMASIFGIEKAP 113

Query: 144 KFINAVLDKVSRKEEIKRS 162
            F+N +L +++ + E+KRS
Sbjct: 114 SFVNGILGRIA-ENEVKRS 131


>gi|301300970|ref|ZP_07207135.1| transcription antitermination factor NusB [Lactobacillus salivarius
           ACS-116-V-Col5a]
 gi|300851437|gb|EFK79156.1| transcription antitermination factor NusB [Lactobacillus salivarius
           ACS-116-V-Col5a]
          Length = 131

 Score =  130 bits (328), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 34/142 (23%), Positives = 60/142 (42%), Gaps = 12/142 (8%)

Query: 12  LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71
           +S  R   R  A Q L+ +   G +      +        D            DL +   
Sbjct: 1   MSLSRHDIRKIAFQTLFAL---GSNPDANSEDIYRELLDEDNN--------DSDLSYLNE 49

Query: 72  IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
           ++ GV+D +  ID+ I+  L + W+  RL+     ILR  + E+     V  ++ ++E V
Sbjct: 50  LVDGVLDHQSEIDMEITKYLRKNWNIGRLNKTDLIILRIAIFEIKYS-DVASKIAVNEAV 108

Query: 132 CIAHDFFYGDEPKFINAVLDKV 153
            +A +F      KF+NA+L  +
Sbjct: 109 ELAKEFSDDKSYKFVNAILQNL 130


>gi|303258269|ref|ZP_07344276.1| transcription antitermination factor NusB [Burkholderiales
           bacterium 1_1_47]
 gi|302859022|gb|EFL82106.1| transcription antitermination factor NusB [Burkholderiales
           bacterium 1_1_47]
          Length = 188

 Score =  130 bits (328), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 32/136 (23%), Positives = 56/136 (41%), Gaps = 14/136 (10%)

Query: 21  LAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRK 80
             A+Q +YQ  +       I           D        +   D  ++R ++HGV +  
Sbjct: 55  EFALQGVYQWLMSHTDPEAI-----------DAAALEAEDFDKADQAFYRELLHGVTEEF 103

Query: 81  QHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYG 140
             ++   +  +  +   + L  I  +IL  G  EL    + P  V+I+E V +A  F   
Sbjct: 104 PSLETSYAPHIDRE--VTSLSPIERAILLIGTYELKNT-TTPYRVVINEAVELAKSFGGS 160

Query: 141 DEPKFINAVLDKVSRK 156
           D  K++N VLDK+  +
Sbjct: 161 DGFKYVNGVLDKMVPE 176


>gi|288957855|ref|YP_003448196.1| N utilization substance protein B [Azospirillum sp. B510]
 gi|288910163|dbj|BAI71652.1| N utilization substance protein B [Azospirillum sp. B510]
          Length = 196

 Score =  130 bits (327), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 40/132 (30%), Positives = 69/132 (52%), Gaps = 3/132 (2%)

Query: 28  YQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLI 87
           YQID+       ++ E+  +R   + + D    ++  D + F  I+ G + R+  +D ++
Sbjct: 53  YQIDLAQAPVENVVGEFVAHRLGEEIDGD---KFVAGDPQLFADIVRGAIHRRAEVDGVL 109

Query: 88  SSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFIN 147
            + L  ++   RL+++L +ILRAG  E+         ++ISEYV +A  FF G EP  +N
Sbjct: 110 GAALDPRFPLDRLELLLRAILRAGAYEIAVHLDTHPRILISEYVDVARAFFSGREPAMVN 169

Query: 148 AVLDKVSRKEEI 159
            VLD V+R    
Sbjct: 170 GVLDHVARALRA 181


>gi|78776604|ref|YP_392919.1| transcription antitermination protein NusB [Sulfurimonas
           denitrificans DSM 1251]
 gi|119390845|sp|Q30TJ7|NUSB_SULDN RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|78497144|gb|ABB43684.1| NusB antitermination factor [Sulfurimonas denitrificans DSM 1251]
          Length = 132

 Score =  130 bits (327), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 40/142 (28%), Positives = 59/142 (41%), Gaps = 13/142 (9%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           R  AR+A V  LY  D+   +  E   E    +   + + D           +   +  G
Sbjct: 4   RHQARMAVVSLLYAFDLGNGNIAEHTDEILEEKKIRNKQKD-----------FALTLYEG 52

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
           VM     +D  I   L + W F RL  I  + LR    E++    +   V+I+E V I  
Sbjct: 53  VMANITPVDEAIVKHL-KDWDFERLGAIERATLRLATYEILFG-ELDSAVVINEAVEITK 110

Query: 136 DFFYGDEPKFINAVLDKVSRKE 157
            F     PKFIN VLD +S+ +
Sbjct: 111 AFGTEQSPKFINGVLDAISKDK 132


>gi|312127939|ref|YP_003992813.1| nusb antitermination factor [Caldicellulosiruptor hydrothermalis
           108]
 gi|311777958|gb|ADQ07444.1| NusB antitermination factor [Caldicellulosiruptor hydrothermalis
           108]
          Length = 134

 Score =  130 bits (327), Expect = 8e-29,   Method: Composition-based stats.
 Identities = 42/141 (29%), Positives = 70/141 (49%), Gaps = 8/141 (5%)

Query: 24  VQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHI 83
           ++ LY        T +II  Y+ +R     EL+ +  +  +D ++   ++ GV+  +Q I
Sbjct: 1   MKILYAYRFED-DTQDIIEFYKKFR-----ELNQDEDFKDIDEKYLERLLKGVIQNQQRI 54

Query: 84  DLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEP 143
           D LI    ++ W  SRL M+   ++R  V EL+    VPV V I E V +A  F     P
Sbjct: 55  DNLIEKY-SKDWPLSRLPMVELELMRMAVYELLFEEEVPVSVAIDEAVDMASIFGIEKAP 113

Query: 144 KFINAVLDKVSRKEEIKRSGC 164
            F+N +L +++   E+KR   
Sbjct: 114 SFVNGILGRIA-ANEVKRGQK 133


>gi|289168504|ref|YP_003446773.1| transcription termination factor nusB [Streptococcus mitis B6]
 gi|288908071|emb|CBJ22911.1| transcription termination factor nusB [Streptococcus mitis B6]
          Length = 139

 Score =  130 bits (327), Expect = 8e-29,   Method: Composition-based stats.
 Identities = 31/142 (21%), Positives = 60/142 (42%), Gaps = 11/142 (7%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           R   R  A QAL  ++    +  E    +       D ++ +          +   ++ G
Sbjct: 9   RRELRKCAFQALMSLEF--DTDVETACHFAYTHDREDADVQIP--------AFLLNLVSG 58

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
           V  +K  +D  I+  L   W+  RL ++  ++LR G+ E+      P  V ++E + +A 
Sbjct: 59  VQTQKDELDKQINQHLKPGWTVERLTLVEKNLLRLGIFEITSF-DTPQLVAVNEAIELAK 117

Query: 136 DFFYGDEPKFINAVLDKVSRKE 157
           +F      +FIN +L +   +E
Sbjct: 118 NFSDQKSARFINGLLSQFVTEE 139


>gi|260583696|ref|ZP_05851444.1| transcription antitermination factor NusB [Granulicatella elegans
           ATCC 700633]
 gi|260158322|gb|EEW93390.1| transcription antitermination factor NusB [Granulicatella elegans
           ATCC 700633]
          Length = 154

 Score =  130 bits (327), Expect = 9e-29,   Method: Composition-based stats.
 Identities = 45/152 (29%), Positives = 70/152 (46%), Gaps = 18/152 (11%)

Query: 15  RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHV---------- 64
           +R   R+ A+QALYQ+DI        +SE++  R   D   D +S    V          
Sbjct: 7   KRRALRIIAIQALYQMDICKD-----LSEFDAVRLALDVLHDEQSFDEEVYSNEALLDEF 61

Query: 65  -DLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECH-SVP 122
            ++ +   +I GV ++ + ID LISS L + W  +R+  +   I+R  V E+      VP
Sbjct: 62  PEIHYSLDLIQGVQNQLEEIDALISSHL-KGWELNRIVRLDLMIMRVAVCEMRSPELEVP 120

Query: 123 VEVIISEYVCIAHDFFYGDEPKFINAVLDKVS 154
             V ++E + IA  +      KFIN VL    
Sbjct: 121 QTVALNEAIEIAKLYSDEKSAKFINGVLSNFV 152


>gi|168335572|ref|ZP_02693635.1| transcription termination factor [Epulopiscium sp. 'N.t. morphotype
           B']
          Length = 135

 Score =  130 bits (327), Expect = 9e-29,   Method: Composition-based stats.
 Identities = 37/142 (26%), Positives = 58/142 (40%), Gaps = 15/142 (10%)

Query: 16  RGIARLAAVQALYQIDIIGCS-TTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74
           R  AR+  VQ LY +         EI++E                        +      
Sbjct: 3   RRQARICVVQMLYNLSFHDKEQAQEILNENLLDIKGKVK-------------TFISETFE 49

Query: 75  GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134
           G++D    ID  I + L   W+ SR+  +   ILR  V E+     +P +V I+E V IA
Sbjct: 50  GIVDNMDAIDTEIEANLV-DWNLSRIAKVDLMILRLAVYEINYAKDLPPKVAINEAVEIA 108

Query: 135 HDFFYGDEPKFINAVLDKVSRK 156
            ++      KFIN +L  +++K
Sbjct: 109 QEYSTEKSGKFINGILGNMNKK 130


>gi|258511747|ref|YP_003185181.1| NusB antitermination factor [Alicyclobacillus acidocaldarius subsp.
           acidocaldarius DSM 446]
 gi|257478473|gb|ACV58792.1| NusB antitermination factor [Alicyclobacillus acidocaldarius subsp.
           acidocaldarius DSM 446]
          Length = 166

 Score =  130 bits (327), Expect = 9e-29,   Method: Composition-based stats.
 Identities = 38/161 (23%), Positives = 64/161 (39%), Gaps = 18/161 (11%)

Query: 16  RGIARLAAVQALYQIDI-IGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74
           R  AR  A+QAL  +D+     + E I+     R                D  +   ++ 
Sbjct: 3   RHEARECALQALCVLDVQRDLGSAEAIASALAER----------GTDAGGDFTYIEELVD 52

Query: 75  GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134
           G       ID L++  + E+WS  R+  +  ++LR    EL+    +P+   I E V IA
Sbjct: 53  GTRRHLDEIDELLARHM-ERWSPERIGRVERNVLRLATYELLFEPELPIASAIDEAVEIA 111

Query: 135 HDFFYGDEPKFINAVLDKVS------RKEEIKRSGCVSAIT 169
             F      +F+N VL K+       R+ + + +G      
Sbjct: 112 KTFATEQSGRFVNGVLAKLLPAVADRRRADTREAGQEKRTA 152


>gi|156743196|ref|YP_001433325.1| NusB antitermination factor [Roseiflexus castenholzii DSM 13941]
 gi|189035899|sp|A7NP12|NUSB_ROSCS RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|156234524|gb|ABU59307.1| NusB antitermination factor [Roseiflexus castenholzii DSM 13941]
          Length = 142

 Score =  129 bits (326), Expect = 9e-29,   Method: Composition-based stats.
 Identities = 32/154 (20%), Positives = 66/154 (42%), Gaps = 14/154 (9%)

Query: 12  LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71
           ++  R   R  A+Q L+++D       +++      R   + +L  E         + R 
Sbjct: 1   MASLRHRVRAIALQILFELDATDHPPDQVVG-----RRLEEEQLPPEGE------RFLRR 49

Query: 72  IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELI--ECHSVPVEVIISE 129
           ++ G  +   H+D +I       W  S++  +  +ILR  + E +  +    P++ II+E
Sbjct: 50  LVFGAWEHAAHLDRIIEEA-APNWPVSQMPGVDKAILRIALFEALIDKEEKTPLKAIINE 108

Query: 130 YVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRSG 163
            V +A  +   +  +F+N VL  V  +   +  G
Sbjct: 109 AVELAKQYGSDNSSRFVNGVLGTVVSRYRERSKG 142


>gi|312622738|ref|YP_004024351.1| nusb antitermination factor [Caldicellulosiruptor kronotskyensis
           2002]
 gi|312203205|gb|ADQ46532.1| NusB antitermination factor [Caldicellulosiruptor kronotskyensis
           2002]
          Length = 134

 Score =  129 bits (326), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 42/141 (29%), Positives = 70/141 (49%), Gaps = 8/141 (5%)

Query: 24  VQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHI 83
           ++ LY        T +II  Y+ +R     EL+ +  +  +D ++   ++ GV+  +Q I
Sbjct: 1   MKILYAYRFED-DTQDIIEFYKRFR-----ELNQDEDFKDIDEKYLEKLLKGVIQNQQRI 54

Query: 84  DLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEP 143
           D LI    ++ W  SRL M+   ++R  V EL+    VPV V I E V +A  F     P
Sbjct: 55  DNLIEKY-SKDWPLSRLPMVELELMRIAVYELLFEEEVPVSVAIDEAVDMASIFGIEKAP 113

Query: 144 KFINAVLDKVSRKEEIKRSGC 164
            F+N +L +++   E+KR   
Sbjct: 114 SFVNGILGRIA-ANEVKRGQK 133


>gi|222528993|ref|YP_002572875.1| NusB antitermination factor [Caldicellulosiruptor bescii DSM 6725]
 gi|222455840|gb|ACM60102.1| NusB antitermination factor [Caldicellulosiruptor bescii DSM 6725]
          Length = 134

 Score =  129 bits (326), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 40/141 (28%), Positives = 70/141 (49%), Gaps = 8/141 (5%)

Query: 24  VQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHI 83
           ++ LY       +  +II  Y+ +R     EL+ +  +  +D ++   ++ GV+  +Q I
Sbjct: 1   MKILYAYRFENNT-QDIIEFYKKFR-----ELNQDEDFKDIDEKYLERLLKGVIQNQQKI 54

Query: 84  DLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEP 143
           D +I    ++ W  SRL M+   ++R  V EL+    VPV V I E V +A  F     P
Sbjct: 55  DNIIEKY-SKDWPLSRLPMVELELMRIAVYELLFEEEVPVSVAIDEAVDMASIFGIEKAP 113

Query: 144 KFINAVLDKVSRKEEIKRSGC 164
            F+N +L +++   E+KR   
Sbjct: 114 SFVNGILGRIA-ANEVKRGQK 133


>gi|32265536|ref|NP_859568.1| transcription antitermination protein NusB [Helicobacter hepaticus
           ATCC 51449]
 gi|39931804|sp|Q7VK55|NUSB_HELHP RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|32261584|gb|AAP76634.1| transcription termination factor NusB [Helicobacter hepaticus ATCC
           51449]
          Length = 157

 Score =  129 bits (326), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 45/157 (28%), Positives = 69/157 (43%), Gaps = 16/157 (10%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           R  AR A +  LY  D+   S  EI       +   + + D           +   ++ G
Sbjct: 4   RTQAREAVIGMLYAYDLGNESIIEIARSMLEEKKIKNKQQD-----------FAFSLLQG 52

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECH-SVPVEVIISEYVCIA 134
           V++    IDL I+  L E W FSRL  +  ++LR G  E++      P  VII+E V + 
Sbjct: 53  VIEHLSQIDLCIAPYLKE-WEFSRLGGMERAMLRLGAFEILYTETDTP--VIINEAVELG 109

Query: 135 HDFFYGD-EPKFINAVLDKVSRKEEIKRSGCVSAITQ 170
             +   D  P+FIN VLD +S+     +     + TQ
Sbjct: 110 KMYGGEDNAPRFINGVLDALSKAHTKNKKSEDCSKTQ 146


>gi|331082309|ref|ZP_08331435.1| transcription antitermination factor NusB [Lachnospiraceae
           bacterium 6_1_63FAA]
 gi|330400795|gb|EGG80396.1| transcription antitermination factor NusB [Lachnospiraceae
           bacterium 6_1_63FAA]
          Length = 135

 Score =  129 bits (326), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 34/142 (23%), Positives = 60/142 (42%), Gaps = 10/142 (7%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           R   R    + L+  +     T E+  + + Y          E  Y+             
Sbjct: 3   RREMREHIFKLLFLGEFN--ETEEMPEQIQLYFEGLSDLQPTEQAYMENKYTL------- 53

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
           V +  + ID+L++   +  W   R+  +  +ILR  V E+     VPV+V I+E V I+ 
Sbjct: 54  VKEHLEEIDVLLNEK-SAGWKTKRMSKVDLNILRLAVYEMKYDEDVPVKVAINEAVEISK 112

Query: 136 DFFYGDEPKFINAVLDKVSRKE 157
            F   D   F+N +L K++R++
Sbjct: 113 SFGGDDSASFVNGILGKIARED 134


>gi|319942896|ref|ZP_08017179.1| transcription antitermination factor NusB [Lautropia mirabilis ATCC
           51599]
 gi|319743438|gb|EFV95842.1| transcription antitermination factor NusB [Lautropia mirabilis ATCC
           51599]
          Length = 130

 Score =  129 bits (326), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 31/143 (21%), Positives = 61/143 (42%), Gaps = 16/143 (11%)

Query: 24  VQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHI 83
           +Q +YQ  +       I +  ET              +   D   F  ++ G + +   +
Sbjct: 1   MQGIYQWLLSAEDIGAIQAHIET-----------SPGFDKADRSHFDTLLKGTISQASAL 49

Query: 84  DLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEP 143
           + ++   L      + L  +  +IL     EL +   +P  V+I+E V +A +F   D  
Sbjct: 50  EAILLPSLDR--PLNLLSPVERAILMQATFELKDLQEIPYRVVINEAVELAKNFGGTDGY 107

Query: 144 KFINAVLDKVS---RKEEIKRSG 163
           K++N VLD+++   R  E++ +G
Sbjct: 108 KYVNGVLDRIAPSVRPHEVRPAG 130


>gi|313905346|ref|ZP_07838712.1| NusB antitermination factor [Eubacterium cellulosolvens 6]
 gi|313469816|gb|EFR65152.1| NusB antitermination factor [Eubacterium cellulosolvens 6]
          Length = 170

 Score =  129 bits (326), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 41/170 (24%), Positives = 67/170 (39%), Gaps = 21/170 (12%)

Query: 15  RRGIARLAAVQALY--QIDIIGCSTTEIISEYETY-----------RFCADTELDVESVY 61
           +R   R    + L+  Q +  G    E I +Y              +  A+ E   ES  
Sbjct: 2   KRSELRETIFRLLFMGQFEKSGEGKNEQIGDYLDEMRSGLIEVPYAKLAAEEETREESPA 61

Query: 62  L-------HVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLE 114
                     D E+ R  +  + +    ID  I+   +  W  SR+  +  SI+R  V E
Sbjct: 62  FVSAIDVSGEDEEYIRTKLAKITEALPEIDEQINKA-SRGWKTSRMPKVDLSIIRLAVYE 120

Query: 115 LIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRSGC 164
           +I    VP  V I+E V IA  +   +   FIN +L +++R  + +  G 
Sbjct: 121 MIHDEDVPTGVAINEAVEIAKHYGGEESATFINGILGQIARNCDQETKGE 170


>gi|331001107|ref|ZP_08324738.1| transcription antitermination factor NusB [Parasutterella
           excrementihominis YIT 11859]
 gi|329569412|gb|EGG51190.1| transcription antitermination factor NusB [Parasutterella
           excrementihominis YIT 11859]
          Length = 159

 Score =  129 bits (326), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 32/136 (23%), Positives = 56/136 (41%), Gaps = 14/136 (10%)

Query: 21  LAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRK 80
             A+Q +YQ  +       I           D        +   D  ++R ++HGV +  
Sbjct: 26  EFALQGVYQWLMSHTDPEAI-----------DAAALEAEDFDKADQAFYRELLHGVTEEF 74

Query: 81  QHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYG 140
             ++   +  +  +   + L  I  +IL  G  EL    + P  V+I+E V +A  F   
Sbjct: 75  PSLEASYAPHIDRE--VTSLSPIERAILLIGTYELKNT-TTPYRVVINEAVELAKSFGGS 131

Query: 141 DEPKFINAVLDKVSRK 156
           D  K++N VLDK+  +
Sbjct: 132 DGFKYVNGVLDKMVPE 147


>gi|312877547|ref|ZP_07737507.1| NusB antitermination factor [Caldicellulosiruptor lactoaceticus 6A]
 gi|311795688|gb|EFR12057.1| NusB antitermination factor [Caldicellulosiruptor lactoaceticus 6A]
          Length = 134

 Score =  129 bits (326), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 41/141 (29%), Positives = 69/141 (48%), Gaps = 8/141 (5%)

Query: 24  VQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHI 83
           ++ LY          +I+  Y+ +R     EL+ +  +  +D ++   ++ GV+  +Q I
Sbjct: 1   MKILYAYRFEDGQ-QDIMEFYKKFR-----ELNQDEDFKDIDEKYLERLLKGVIQNQQRI 54

Query: 84  DLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEP 143
           D LI    ++ W  SRL M+   +LR  V EL+    VPV V I E V +A  F     P
Sbjct: 55  DNLIEKY-SKDWPLSRLPMVELELLRIAVYELLFEEDVPVSVAIDEAVDMASIFGIEKAP 113

Query: 144 KFINAVLDKVSRKEEIKRSGC 164
            F+N +L +++   E+KR   
Sbjct: 114 SFVNGILGRIA-ANEVKRGQK 133


>gi|254445455|ref|ZP_05058931.1| transcription antitermination factor NusB [Verrucomicrobiae
           bacterium DG1235]
 gi|198259763|gb|EDY84071.1| transcription antitermination factor NusB [Verrucomicrobiae
           bacterium DG1235]
          Length = 133

 Score =  129 bits (326), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 36/144 (25%), Positives = 67/144 (46%), Gaps = 13/144 (9%)

Query: 24  VQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHI 83
           +Q +Y   I       ++ +   +    + E D  S        +   +IHG+++  + I
Sbjct: 1   MQYIYAWSIN--RPNNLVDDLTVFFEGLEEERDYYS--------FAEELIHGMVENSEDI 50

Query: 84  DLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEP 143
           D  I   L + W FSR+  I  +ILR    EL+    +P  V I+E + ++ +F   +  
Sbjct: 51  DDKIMG-LAKNWDFSRIAKIDLAILRLAAYELLFRKDIPPVVTINEAIDLSKEFSTAESR 109

Query: 144 KFINAVLDKVSRKEEIKRSGCVSA 167
           +F+N +LDK+  K E+ R    ++
Sbjct: 110 RFVNGILDKL--KGELDRPSRTAS 131


>gi|116515210|ref|YP_802839.1| hypothetical protein BCc_285 [Buchnera aphidicola str. Cc (Cinara
           cedri)]
 gi|122285394|sp|Q057F3|NUSB_BUCCC RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|116257064|gb|ABJ90746.1| transcription termination [Buchnera aphidicola str. Cc (Cinara
           cedri)]
          Length = 142

 Score =  129 bits (325), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 36/142 (25%), Positives = 62/142 (43%), Gaps = 12/142 (8%)

Query: 12  LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71
           +  +R  AR  A+Q LY   I                F  +  +  ++    +D  +F  
Sbjct: 1   MKSKRRKARELAIQVLYSWQISKKIVL----------FETEKYVIEQNKKYSLDKIYFHK 50

Query: 72  IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
           I+ GV+    +  +            +RLD I  +ILR    E+I+   +P +VII+E +
Sbjct: 51  IVTGVIKNIFY--IDKIIKKNISKKKNRLDYIEQAILRLASYEIIKRLDIPYKVIINEGI 108

Query: 132 CIAHDFFYGDEPKFINAVLDKV 153
            +A  +      KFIN++LDK+
Sbjct: 109 ELAKIYGSNKSHKFINSILDKI 130


>gi|119962399|ref|YP_948012.1| transcription antitermination factor NusB [Arthrobacter aurescens
           TC1]
 gi|166215660|sp|A1R700|NUSB_ARTAT RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|119949258|gb|ABM08169.1| transcription antitermination factor NusB [Arthrobacter aurescens
           TC1]
          Length = 136

 Score =  129 bits (325), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 34/140 (24%), Positives = 62/140 (44%), Gaps = 14/140 (10%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           RG AR  A++ L++ +    S  + ++     R   D  ++           +   I+ G
Sbjct: 4   RGKARSRALEVLFEAEQRSVSAFDAMT---ARREKTDLVIN----------PYTVEIVEG 50

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
           V+  +  ID  + +   + W+  R+  +   ILR G  EL+    VP  V +SE V +A 
Sbjct: 51  VVSMQATIDEFLQTY-AQGWTLERMPSVDRIILRIGAWELLYNDEVPDGVAVSEAVALAK 109

Query: 136 DFFYGDEPKFINAVLDKVSR 155
                + P FIN +L ++ +
Sbjct: 110 TMSTDESPAFINGLLGRLQK 129


>gi|319789884|ref|YP_004151517.1| NusB antitermination factor [Thermovibrio ammonificans HB-1]
 gi|317114386|gb|ADU96876.1| NusB antitermination factor [Thermovibrio ammonificans HB-1]
          Length = 142

 Score =  129 bits (325), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 41/149 (27%), Positives = 66/149 (44%), Gaps = 12/149 (8%)

Query: 10  LKLSHR-RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEW 68
           + L++R +  AR  A   +YQ+D+      E+   Y +       E+   S Y       
Sbjct: 1   MALTNREKKKAREHACLIMYQVDVGNLPLKEVTENYWSDFGKEKEEIKELSEY------- 53

Query: 69  FRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIIS 128
              ++   ++  + +D  I   L + W   RL  +  SILR    E++     P E +I+
Sbjct: 54  ---LVKKTIEHLEEVDRAIGKHLKKGWVIERLLPMDRSILRVASYEILNEEISPPEAVIN 110

Query: 129 EYVCIAHDFF-YGDEPKFINAVLDKVSRK 156
           + V IA  +      PKFINA+LDKV R 
Sbjct: 111 DAVEIAKSYGEDEKSPKFINAILDKVKRD 139


>gi|183602591|ref|ZP_02963956.1| NusB antitermination protein [Bifidobacterium animalis subsp.
           lactis HN019]
 gi|219683633|ref|YP_002470016.1| transcription antitermination factor NusB [Bifidobacterium animalis
           subsp. lactis AD011]
 gi|241190665|ref|YP_002968059.1| transcription termination factor [Bifidobacterium animalis subsp.
           lactis Bl-04]
 gi|241196071|ref|YP_002969626.1| transcription termination factor [Bifidobacterium animalis subsp.
           lactis DSM 10140]
 gi|254772615|sp|B8DTW1|NUSB_BIFA0 RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|183218232|gb|EDT88878.1| NusB antitermination protein [Bifidobacterium animalis subsp.
           lactis HN019]
 gi|219621283|gb|ACL29440.1| transcription antitermination factor NusB [Bifidobacterium animalis
           subsp. lactis AD011]
 gi|240249057|gb|ACS45997.1| Transcription termination factor [Bifidobacterium animalis subsp.
           lactis Bl-04]
 gi|240250625|gb|ACS47564.1| Transcription termination factor [Bifidobacterium animalis subsp.
           lactis DSM 10140]
 gi|289178403|gb|ADC85649.1| N utilization substance protein B [Bifidobacterium animalis subsp.
           lactis BB-12]
 gi|295793654|gb|ADG33189.1| Transcription termination factor [Bifidobacterium animalis subsp.
           lactis V9]
          Length = 154

 Score =  129 bits (325), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 33/149 (22%), Positives = 62/149 (41%), Gaps = 14/149 (9%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           R  AR  A+  LY+ D  G     ++ E              +        E+   I+ G
Sbjct: 3   RSTARRRALNTLYEADEKGQDFLSLLDERIA-----------QPGAQTPLPEYAIEIVRG 51

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
           V + ++ ID  +++  +  W   R+  I  +ILR    E++    VP +V I E + ++ 
Sbjct: 52  VDEHRRDIDSQLNTH-STGWKVKRMHAIDRNILRIATWEILYNDDVPDKVAIDEALNLSK 110

Query: 136 DFFYGDEPKFINAVLDKV--SRKEEIKRS 162
                  P FI+ VL  +  ++ ++  +S
Sbjct: 111 TLSDDAAPSFIHGVLSAIVAAKDKQSPQS 139


>gi|158320645|ref|YP_001513152.1| NusB antitermination factor [Alkaliphilus oremlandii OhILAs]
 gi|166918801|sp|A8MFJ3|NUSB_ALKOO RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|158140844|gb|ABW19156.1| NusB antitermination factor [Alkaliphilus oremlandii OhILAs]
          Length = 138

 Score =  129 bits (325), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 28/142 (19%), Positives = 57/142 (40%), Gaps = 12/142 (8%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           R +AR   ++ L+++ I              +          E        E+   +++ 
Sbjct: 3   RKLARELTMKVLFEMHINN-----------DFNIQRVEHHLFEGSIEEQQKEYIHKVLNE 51

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
            +   + ID +I    +  W  +R+  +  +ILR    E+I    +P  V I+E + +A 
Sbjct: 52  AILNLEAIDSIIEEY-STSWKLNRIANVDLAILRLAFSEIIYMKDIPYRVSINEAIELAK 110

Query: 136 DFFYGDEPKFINAVLDKVSRKE 157
            +   + P F+N +L K   +E
Sbjct: 111 IYGSDETPNFVNGILGKYVEQE 132


>gi|33594361|ref|NP_882005.1| transcription antitermination protein NusB [Bordetella pertussis
           Tohama I]
 gi|33595544|ref|NP_883187.1| transcription antitermination protein NusB [Bordetella
           parapertussis 12822]
 gi|33599942|ref|NP_887502.1| transcription antitermination protein NusB [Bordetella
           bronchiseptica RB50]
 gi|39931820|sp|Q7VTN3|NUSB_BORPE RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|39931833|sp|Q7W142|NUSB_BORPA RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|39931858|sp|Q7WNT2|NUSB_BORBR RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|33564436|emb|CAE43747.1| N utilization substance protein B [Bordetella pertussis Tohama I]
 gi|33565622|emb|CAE40268.1| N utilization substance protein B [Bordetella parapertussis]
 gi|33567539|emb|CAE31452.1| N utilization substance protein B [Bordetella bronchiseptica RB50]
 gi|332383772|gb|AEE68619.1| transcription antitermination protein NusB [Bordetella pertussis
           CS]
          Length = 154

 Score =  129 bits (325), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 34/131 (25%), Positives = 57/131 (43%), Gaps = 9/131 (6%)

Query: 24  VQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHI 83
           +Q +Y   + G   T+   E + +       L     +   D +WF+ ++HGV+     +
Sbjct: 19  LQGVYAWLLRGGEGTQDAGEIDAH-------LRDAEDFSEADAQWFKTLLHGVLREAPVL 71

Query: 84  DLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEP 143
                  +      + L  +   IL  G  EL+    VP +V I+E V +A  F   D  
Sbjct: 72  RERFLPYIDR--PLAELSPVEHGILLIGSFELMHHVEVPYKVAINEAVELAKSFGGTDGF 129

Query: 144 KFINAVLDKVS 154
           KF+N VLDK++
Sbjct: 130 KFVNGVLDKLA 140


>gi|261392944|emb|CAX50529.1| N utilization substance protein B (NusB protein) [Neisseria
           meningitidis 8013]
 gi|325127809|gb|EGC50717.1| transcription antitermination factor NusB [Neisseria meningitidis
           N1568]
          Length = 141

 Score =  129 bits (325), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 42/155 (27%), Positives = 60/155 (38%), Gaps = 18/155 (11%)

Query: 10  LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF 69
           +K + RR   R  AVQA+YQ  I   +  EI              +   S +   D E F
Sbjct: 1   MKTARRRS--RELAVQAVYQSLINRTAAPEIA-----------KNIREMSDFAKADEELF 47

Query: 70  RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISE 129
             +  G           I   L        L+ I  ++L     EL      P  VII+E
Sbjct: 48  NKLFFGTQTNAAEYIQQIRPLLDRDEK--DLNPIERAVLLTACHELSAMPETPYPVIINE 105

Query: 130 YVCIAHDFFYGDEPKFINAVLDKVS---RKEEIKR 161
            + +   F   D  KF+N +LDK++   R +E KR
Sbjct: 106 AIEVTKTFGGTDGHKFVNGILDKLAAQIRPDEPKR 140


>gi|171740948|ref|ZP_02916755.1| hypothetical protein BIFDEN_00009 [Bifidobacterium dentium ATCC
           27678]
 gi|306823314|ref|ZP_07456689.1| transcription antitermination factor NusB [Bifidobacterium dentium
           ATCC 27679]
 gi|309802656|ref|ZP_07696760.1| transcription antitermination factor NusB [Bifidobacterium dentium
           JCVIHMP022]
 gi|171276562|gb|EDT44223.1| hypothetical protein BIFDEN_00009 [Bifidobacterium dentium ATCC
           27678]
 gi|304553021|gb|EFM40933.1| transcription antitermination factor NusB [Bifidobacterium dentium
           ATCC 27679]
 gi|308220720|gb|EFO77028.1| transcription antitermination factor NusB [Bifidobacterium dentium
           JCVIHMP022]
          Length = 147

 Score =  129 bits (325), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 35/139 (25%), Positives = 56/139 (40%), Gaps = 12/139 (8%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           R  AR  A+  LY+ D  G     +++E            D           +   I+ G
Sbjct: 3   RSTARKRALNTLYEADEKGQDILSLLAERIEQPGAQTPLPD-----------YAIEIVRG 51

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
           V +    ID ++    +  W   R+ ++  +ILR  V E++    VP  V I E + +A 
Sbjct: 52  VAENLYRIDSVLDEH-STGWKVKRMGVVDRNILRIAVWEIMFNDDVPNMVAIDEALGLAK 110

Query: 136 DFFYGDEPKFINAVLDKVS 154
                D P FI+ +L  VS
Sbjct: 111 TLCDDDSPAFIHGLLSAVS 129


>gi|166030414|ref|ZP_02233243.1| hypothetical protein DORFOR_00075 [Dorea formicigenerans ATCC
           27755]
 gi|166029772|gb|EDR48529.1| hypothetical protein DORFOR_00075 [Dorea formicigenerans ATCC
           27755]
          Length = 132

 Score =  129 bits (325), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 38/140 (27%), Positives = 65/140 (46%), Gaps = 9/140 (6%)

Query: 15  RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74
           +R   R    + ++  +    S  E+  + + Y    D E   E      D+ + R    
Sbjct: 2   KRTEMREHIFRMVFSYEFN--SDQEMPQQMQLYFEQLDQEPKEE------DMAYIRDKAL 53

Query: 75  GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134
            V+ + + ID +++  +T  W  SR++ +  SILR  V E+     VPV V I+E V +A
Sbjct: 54  NVILKSEEIDEMLNEHVT-GWKTSRMNKVDLSILRLAVYEMKYDEDVPVGVAINEAVELA 112

Query: 135 HDFFYGDEPKFINAVLDKVS 154
             +   + P FIN VL ++S
Sbjct: 113 KKYSGDEGPAFINGVLARLS 132


>gi|163840712|ref|YP_001625117.1| transcription antitermination factor [Renibacterium salmoninarum
           ATCC 33209]
 gi|162954188|gb|ABY23703.1| transcription antitermination factor [Renibacterium salmoninarum
           ATCC 33209]
          Length = 143

 Score =  129 bits (325), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 34/153 (22%), Positives = 60/153 (39%), Gaps = 19/153 (12%)

Query: 1   MTIQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESV 60
           MT +        +  R  AR  A+  L++      S  E++                   
Sbjct: 1   MTEKSA-----GTSARSKARRRALDILFEAGQRDVSAAEVLKLRR-------------ER 42

Query: 61  YLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHS 120
              +   +   II GV  +++ ID  + +   + W+  R+  +    LR G  EL+    
Sbjct: 43  TDQIINPYSVDIIDGVGQKQEEIDEFLQTY-AQGWTLERMPAVDLIALRIGAWELLYNDD 101

Query: 121 VPVEVIISEYVCIAHDFFYGDEPKFINAVLDKV 153
           VP  V +SE V +A      + P+FIN +L ++
Sbjct: 102 VPDAVAVSEAVELAKQLSTDESPQFINGLLGRL 134


>gi|89901446|ref|YP_523917.1| NusB antitermination factor [Rhodoferax ferrireducens T118]
 gi|119390807|sp|Q21V17|NUSB_RHOFD RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|89346183|gb|ABD70386.1| NusB antitermination factor [Rhodoferax ferrireducens T118]
          Length = 177

 Score =  129 bits (325), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 43/184 (23%), Positives = 68/184 (36%), Gaps = 35/184 (19%)

Query: 1   MTIQDNKKDLKLSHR-------------------RGIARLAAVQALYQIDIIGCSTTEII 41
           MT Q  K       R                   R  AR  A+QALYQ  +   + ++I 
Sbjct: 1   MTEQPTKPTGSRPPRQPRTGLTSTGARKAGSKSDRSRAREFALQALYQSLVGKNTVSDI- 59

Query: 42  SEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLD 101
                     D      + +   D   F  ++ G  ++     L           F+ + 
Sbjct: 60  ----------DAFTRDLAGFSKADSLHFDTLLQGCTEQAAA--LDALLLPLLDRKFAEIS 107

Query: 102 MILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVS---RKEE 158
            I  SI+  G  EL  C  VP  V+++E V +A +F   D  K++NAVL+ ++   R  E
Sbjct: 108 PIEHSIMWIGAFELQHCLDVPWRVVLNECVELAKEFGGTDGHKYVNAVLNSLAPSLRAAE 167

Query: 159 IKRS 162
           +   
Sbjct: 168 VNAD 171


>gi|302343804|ref|YP_003808333.1| NusB antitermination factor [Desulfarculus baarsii DSM 2075]
 gi|301640417|gb|ADK85739.1| NusB antitermination factor [Desulfarculus baarsii DSM 2075]
          Length = 142

 Score =  129 bits (324), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 32/139 (23%), Positives = 63/139 (45%), Gaps = 13/139 (9%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           R ++R  A++ LYQ++         ++ +    F A  +L            + R ++ G
Sbjct: 4   RSLSRELALKVLYQMEHGDQDAEAALTVF-AENFAAPEKL----------FAYTRQLVLG 52

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLEL-IECHSVPVEVIISEYVCIA 134
           V   ++ ID +++  ++ KW   R+  +  +ILR    E+ +    VP +  ISE + ++
Sbjct: 53  VEQNRRRIDEMLNR-VSRKWRVERMSWVDRNILRLACYEIYLAPQPVPPKAAISEALDLS 111

Query: 135 HDFFYGDEPKFINAVLDKV 153
             +       FIN VLD +
Sbjct: 112 KRYAEDCSCSFINGVLDSL 130


>gi|309789561|ref|ZP_07684142.1| NusB antitermination factor [Oscillochloris trichoides DG6]
 gi|308228297|gb|EFO81944.1| NusB antitermination factor [Oscillochloris trichoides DG6]
          Length = 150

 Score =  129 bits (324), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 36/147 (24%), Positives = 65/147 (44%), Gaps = 14/147 (9%)

Query: 12  LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71
           ++  R   R+AA+Q L+++D        +       R   D EL  E         +   
Sbjct: 1   MASLRHRVRIAALQVLFEVDATDHPIDVVYE-----RRLVDEELPAEGE------RFLNQ 49

Query: 72  IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELI--ECHSVPVEVIISE 129
           I+ G  + + ++D +I       W  +++  +  +ILR  + EL+  E    PV+ +I+E
Sbjct: 50  IVFGSWEHRSYLDGVIEEA-APNWPVTQMPGVDKAILRIAIFELLIDEVEQTPVKAVINE 108

Query: 130 YVCIAHDFFYGDEPKFINAVLDKVSRK 156
            V +A  F   +  +FIN VL  V  +
Sbjct: 109 AVELAKHFGSDNSSRFINGVLGTVVNR 135


>gi|218961705|ref|YP_001741480.1| N utilization substance protein B [Candidatus Cloacamonas
           acidaminovorans]
 gi|167730362|emb|CAO81274.1| N utilization substance protein B [Candidatus Cloacamonas
           acidaminovorans]
          Length = 153

 Score =  129 bits (324), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 33/150 (22%), Positives = 62/150 (41%), Gaps = 16/150 (10%)

Query: 15  RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVD--------L 66
           +R  AR  AVQ LY ++       E+  +Y  Y    +   D+       +         
Sbjct: 3   QRRKAREMAVQCLYSLEFS-----EVEKDYREYGLLNEY-PDILLSLAEAEHIQPNSPVY 56

Query: 67  EWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVI 126
            +   ++   +   + ++  I   L++ W    + ++  SIL     EL+     P  V+
Sbjct: 57  AFADELVKNTIINIEQVESEIDK-LSDNWELEDIALLDRSILCLAAYELLFT-DTPAPVV 114

Query: 127 ISEYVCIAHDFFYGDEPKFINAVLDKVSRK 156
           I+E + IA  F      KFIN +LD ++++
Sbjct: 115 INEAIEIAKKFSSEASGKFINGILDALNKE 144


>gi|261337964|ref|ZP_05965848.1| transcription antitermination factor NusB [Bifidobacterium gallicum
           DSM 20093]
 gi|270277459|gb|EFA23313.1| transcription antitermination factor NusB [Bifidobacterium gallicum
           DSM 20093]
          Length = 149

 Score =  129 bits (324), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 34/138 (24%), Positives = 57/138 (41%), Gaps = 12/138 (8%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           R  AR  A+  LY+ D        ++ E             VE        E+   I+ G
Sbjct: 3   RSTARKRALNTLYEADEKDQDIKSLLQERI-----------VEPGAQTPLPEYAIEIVEG 51

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
           V D ++ +D +I+   +  W   R+ +I  +ILR    E+I    +P +V I E + +A 
Sbjct: 52  VADNRKDLDRIINEH-STGWKVWRMPVIDRNILRIAAWEIIHNDEIPDKVAIDEALNLAK 110

Query: 136 DFFYGDEPKFINAVLDKV 153
                +   FI+ VL  +
Sbjct: 111 TLSDDESLGFIHGVLSAI 128


>gi|222526903|ref|YP_002571374.1| NusB antitermination factor [Chloroflexus sp. Y-400-fl]
 gi|254772624|sp|B9LDT2|NUSB_CHLSY RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|222450782|gb|ACM55048.1| NusB antitermination factor [Chloroflexus sp. Y-400-fl]
          Length = 151

 Score =  129 bits (324), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 32/158 (20%), Positives = 71/158 (44%), Gaps = 14/158 (8%)

Query: 11  KLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFR 70
           +L+ +R   R+AA+Q L+++D    +  +++    T           +        E+ R
Sbjct: 5   RLASQRHRVRIAALQILFEVDETDHAIDQVLERRLT-----------DEPMSQESAEFLR 53

Query: 71  VIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELI--ECHSVPVEVIIS 128
            ++ G  + + ++D +I       W  +++  +  ++LR  + EL+  +    P++ +I+
Sbjct: 54  RLVFGAWEHRSYLDRIIEEA-APNWPVAQMPGVDKAVLRIALFELLIDDVERTPIKAVIN 112

Query: 129 EYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRSGCVS 166
           E V +A  F   +  +F+N VL  V  +    R   V 
Sbjct: 113 EAVELAKQFGSDNSSRFVNGVLGTVVTRYLADRDDTVE 150


>gi|309378212|emb|CBX23156.1| unnamed protein product [Neisseria lactamica Y92-1009]
          Length = 141

 Score =  129 bits (324), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 42/155 (27%), Positives = 59/155 (38%), Gaps = 18/155 (11%)

Query: 10  LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF 69
           +K + RR   R  AVQA+YQ  I   +  EI              +   S +   D E F
Sbjct: 1   MKTARRRS--RELAVQAVYQSLINRTAAPEIA-----------KNIREMSDFAKADEELF 47

Query: 70  RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISE 129
             +  G           I   L        L+ I  ++L     EL      P  VII+E
Sbjct: 48  NKLFFGTQTNAAEYIRQIRPLLDRDEK--DLNPIERAVLLTACHELSAMPETPYPVIINE 105

Query: 130 YVCIAHDFFYGDEPKFINAVLDKVS---RKEEIKR 161
            + +   F   D  KF+N +LDK++   R  E KR
Sbjct: 106 AIEVTKTFGGTDGHKFVNGILDKLAAQIRPNEPKR 140


>gi|225377103|ref|ZP_03754324.1| hypothetical protein ROSEINA2194_02748 [Roseburia inulinivorans DSM
           16841]
 gi|225211008|gb|EEG93362.1| hypothetical protein ROSEINA2194_02748 [Roseburia inulinivorans DSM
           16841]
          Length = 130

 Score =  129 bits (324), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 28/139 (20%), Positives = 62/139 (44%), Gaps = 11/139 (7%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           R   R    + L++++    +  ++  +   +    +            D E+     H 
Sbjct: 3   RRGLREQVFKMLFRVEF--HNVEDMPEQMNMFEEVEE--------CSEKDKEYISNKFHN 52

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
           ++++   ID  I+  ++E W   R+  +  +++R  V E+     +PV+V I+E V +A 
Sbjct: 53  IVEKIDEIDAAINE-VSEGWKTRRMGKVDLTLIRLAVYEMKYEDDIPVKVAINEAVELAK 111

Query: 136 DFFYGDEPKFINAVLDKVS 154
            +   + P F+N VL K++
Sbjct: 112 QYGTDESPAFVNGVLAKLA 130


>gi|312793191|ref|YP_004026114.1| nusb antitermination factor [Caldicellulosiruptor kristjanssonii
           177R1B]
 gi|312180331|gb|ADQ40501.1| NusB antitermination factor [Caldicellulosiruptor kristjanssonii
           177R1B]
          Length = 134

 Score =  128 bits (323), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 40/141 (28%), Positives = 69/141 (48%), Gaps = 8/141 (5%)

Query: 24  VQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHI 83
           ++ LY          +I+  Y+ +R     EL+ +  +  +D ++   ++ GV+  +Q I
Sbjct: 1   MKILYAYRFEDGQ-QDIMEFYKKFR-----ELNQDEDFKDIDEKYLERLLKGVIQNQQRI 54

Query: 84  DLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEP 143
           D LI    ++ W  SRL M+   ++R  V EL+    VPV V I E V +A  F     P
Sbjct: 55  DNLIEKY-SKDWPLSRLPMVELELMRIAVYELLFEEDVPVSVAIDEAVDMASIFGIEKAP 113

Query: 144 KFINAVLDKVSRKEEIKRSGC 164
            F+N +L +++   E+KR   
Sbjct: 114 SFVNGILGRIA-ANEVKRGQK 133


>gi|225021344|ref|ZP_03710536.1| hypothetical protein CORMATOL_01363 [Corynebacterium matruchotii
           ATCC 33806]
 gi|224945726|gb|EEG26935.1| hypothetical protein CORMATOL_01363 [Corynebacterium matruchotii
           ATCC 33806]
          Length = 277

 Score =  128 bits (323), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 37/133 (27%), Positives = 58/133 (43%), Gaps = 7/133 (5%)

Query: 26  ALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDL 85
            LY+ +        I+ +             V+   +     +   II GV +    ID 
Sbjct: 1   MLYEAEARDVDPVAIVEDRINLA-------RVDITLVAPIAAYTSEIIAGVAEELNRIDD 53

Query: 86  LISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKF 145
           +I+  L E W  SR+  +  +ILR  V E+I    VPV+  +SE V +A  +     P +
Sbjct: 54  VIAEYLAENWELSRISAVDRAILRVAVWEMIFNPDVPVKTALSEAVELASQYSGASAPAY 113

Query: 146 INAVLDKVSRKEE 158
           INAVLD V +  +
Sbjct: 114 INAVLDSVVKNID 126


>gi|255327156|ref|ZP_05368231.1| transcription antitermination factor NusB [Rothia mucilaginosa ATCC
           25296]
 gi|283458028|ref|YP_003362637.1| transcription termination factor [Rothia mucilaginosa DY-18]
 gi|255295774|gb|EET75116.1| transcription antitermination factor NusB [Rothia mucilaginosa ATCC
           25296]
 gi|283134052|dbj|BAI64817.1| transcription termination factor [Rothia mucilaginosa DY-18]
          Length = 136

 Score =  128 bits (323), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 39/140 (27%), Positives = 61/140 (43%), Gaps = 14/140 (10%)

Query: 14  HRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVII 73
           + R  ARL A++ L++ D       E++     Y     +              +   II
Sbjct: 2   NSRTKARLRALEVLFEADQRNEDYIEVLRRRRLYTVAQIS-------------AYSEEII 48

Query: 74  HGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCI 133
            GV D  + I   + +     WSF R+  +  ++LR G  EL+    VP  V ISE V +
Sbjct: 49  RGVRDHDEEIREFVETY-ARDWSFERMPAVDRAVLRIGTWELLYNDEVPDAVAISEAVGL 107

Query: 134 AHDFFYGDEPKFINAVLDKV 153
           A      + PKF+N +LDK+
Sbjct: 108 ARVLSTNESPKFVNGLLDKL 127


>gi|163848950|ref|YP_001636994.1| transcription antitermination factor NusB [Chloroflexus aurantiacus
           J-10-fl]
 gi|163670239|gb|ABY36605.1| transcription antitermination factor NusB [Chloroflexus aurantiacus
           J-10-fl]
          Length = 153

 Score =  128 bits (323), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 32/158 (20%), Positives = 71/158 (44%), Gaps = 14/158 (8%)

Query: 11  KLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFR 70
           +L+ +R   R+AA+Q L+++D    +  +++    T           +        E+ R
Sbjct: 7   RLASQRHRVRIAALQILFEVDETDHAIDQVLERRLT-----------DEPMSQESAEFLR 55

Query: 71  VIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELI--ECHSVPVEVIIS 128
            ++ G  + + ++D +I       W  +++  +  ++LR  + EL+  +    P++ +I+
Sbjct: 56  RLVFGAWEHRSYLDRIIEEA-APNWPVAQMPGVDKAVLRIALFELLIDDVERTPIKAVIN 114

Query: 129 EYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRSGCVS 166
           E V +A  F   +  +F+N VL  V  +    R   V 
Sbjct: 115 EAVELAKQFGSDNSSRFVNGVLGTVVTRYLADRDDTVE 152


>gi|304436643|ref|ZP_07396612.1| transcription antitermination factor NusB [Selenomonas sp. oral
           taxon 149 str. 67H29BP]
 gi|304370339|gb|EFM23995.1| transcription antitermination factor NusB [Selenomonas sp. oral
           taxon 149 str. 67H29BP]
          Length = 137

 Score =  128 bits (323), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 26/141 (18%), Positives = 55/141 (39%), Gaps = 10/141 (7%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           R  AR AA+  L+Q +        + +         D   D        DL +   ++ G
Sbjct: 3   RRHAREAALLTLFQREFDQDRPPTVAA--------GDLASDAVDGLTEKDLAYANGLVQG 54

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHS-VPVEVIISEYVCIA 134
               +  ID  I   + ++W   R+  +  +++R    E+      +   + I+E V +A
Sbjct: 55  TCSVQPEIDAAIER-MAKEWKLHRMAPVDRNLIRMAYYEMCYQEERIDPPIAINEAVELA 113

Query: 135 HDFFYGDEPKFINAVLDKVSR 155
             +   D  +++N +L  + +
Sbjct: 114 KKYGSDDAGRYVNGILAALQK 134


>gi|148655139|ref|YP_001275344.1| NusB antitermination factor [Roseiflexus sp. RS-1]
 gi|166215713|sp|A5URZ1|NUSB_ROSS1 RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|148567249|gb|ABQ89394.1| NusB antitermination factor [Roseiflexus sp. RS-1]
          Length = 142

 Score =  128 bits (323), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 32/154 (20%), Positives = 65/154 (42%), Gaps = 14/154 (9%)

Query: 12  LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71
           ++  R   R  A+Q L+++D    S  ++++               E         + R 
Sbjct: 1   MASLRRRVRAIALQILFELDATDHSPDQVVARRLE-----------EERLPPEGERFLRR 49

Query: 72  IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELI--ECHSVPVEVIISE 129
           ++ G  +   ++D +I       W  S++  +  +ILR  + E +  E    P++ II+E
Sbjct: 50  LVFGAWEHASYLDRIIEET-APNWPVSQMPGVDKAILRIALFEALIDEEEKTPLKAIINE 108

Query: 130 YVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRSG 163
            V +A  +   +  +F+N VL  V  +   +R G
Sbjct: 109 AVELAKQYGSDNSSRFVNGVLGTVVSRYRERRKG 142


>gi|218289636|ref|ZP_03493856.1| NusB antitermination factor [Alicyclobacillus acidocaldarius LAA1]
 gi|218240286|gb|EED07469.1| NusB antitermination factor [Alicyclobacillus acidocaldarius LAA1]
          Length = 165

 Score =  128 bits (323), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 36/139 (25%), Positives = 59/139 (42%), Gaps = 12/139 (8%)

Query: 16  RGIARLAAVQALYQIDI-IGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74
           R  AR  A+QAL  +D+     + E I+     R           +    D  +   ++ 
Sbjct: 3   RHEARECALQALCVLDVQRDLGSAEAIASVLAER----------GLDAGGDWAYIEELVD 52

Query: 75  GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134
           G       ID L++  + E+WS  R+  +  ++LR    EL+    +P+   I E V IA
Sbjct: 53  GTRRHLGEIDELLARHM-ERWSPERIGRVERNVLRLATYELLFEPELPIASAIDEAVQIA 111

Query: 135 HDFFYGDEPKFINAVLDKV 153
             F      +F+N VL K+
Sbjct: 112 KTFATEQSGRFVNGVLAKL 130


>gi|226320701|ref|ZP_03796259.1| transcription antitermination factor NusB [Borrelia burgdorferi
           29805]
 gi|226233917|gb|EEH32640.1| transcription antitermination factor NusB [Borrelia burgdorferi
           29805]
          Length = 693

 Score =  128 bits (323), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 40/143 (27%), Positives = 66/143 (46%), Gaps = 9/143 (6%)

Query: 17  GIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGV 76
              R+ A Q +Y IDI   +  +I   +       D  LD+E+  +     ++  ++ G 
Sbjct: 2   HEVRVLAFQKIYSIDINQSAMDDIFDIFN----IEDKGLDIENESIK---SFYSSLVIGT 54

Query: 77  MDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECH-SVPVEVIISEYVCIAH 135
            +  +HID LI   ++  WS  R+D +  +ILR GV  L   +       II E + IA 
Sbjct: 55  FNNLEHIDSLIRD-ISLNWSLERMDKVDLAILRMGVYSLKFQNFENSKRAIIDEAILIAK 113

Query: 136 DFFYGDEPKFINAVLDKVSRKEE 158
            +   +  KFIN +LD + +  E
Sbjct: 114 KYGSKNSYKFINGILDALLKNME 136


>gi|296123835|ref|YP_003631613.1| transcription antitermination factor NusB [Planctomyces limnophilus
           DSM 3776]
 gi|296016175|gb|ADG69414.1| transcription antitermination factor NusB [Planctomyces limnophilus
           DSM 3776]
          Length = 163

 Score =  128 bits (323), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 39/157 (24%), Positives = 67/157 (42%), Gaps = 14/157 (8%)

Query: 10  LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF 69
           + +S RR  AR   +Q LY  D+           +E  R     EL  E++       + 
Sbjct: 1   MSMS-RRHKAREVVLQMLYLKDLNPD------VGFEQIRQMIQAELPDETL-----SRFA 48

Query: 70  RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISE 129
             +  G M+ +  +D  I       WS SR+     ++LR G  EL++    P  V+I E
Sbjct: 49  WGLFSGAMEFRPALDKKIEEAAV-NWSLSRMAPTDRNVLRLGAYELLQT-DTPHRVVIDE 106

Query: 130 YVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRSGCVS 166
            + +A  F   +   F+N +LD++   E+  R+   +
Sbjct: 107 ALELAKSFGGANSGSFVNGILDRLLPPEKRARAAKPT 143


>gi|167758087|ref|ZP_02430214.1| hypothetical protein CLOSCI_00425 [Clostridium scindens ATCC 35704]
 gi|167663984|gb|EDS08114.1| hypothetical protein CLOSCI_00425 [Clostridium scindens ATCC 35704]
          Length = 132

 Score =  128 bits (323), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 37/141 (26%), Positives = 59/141 (41%), Gaps = 12/141 (8%)

Query: 15  RRGIARLAAVQALYQIDII-GCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVII 73
           +R   R    + L+ ++   G    E +  Y      A             DL++ R  +
Sbjct: 2   KRTEQREHIFKMLFGVEFNAGGDMPEQLELYFGQLEGA----------GEKDLDYIREKV 51

Query: 74  HGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCI 133
             +  + + ID LI+   T  W  SR++ +  +ILR  V E+     VP  V I E V +
Sbjct: 52  QKIASKVEEIDALINEHTTR-WKTSRMNKVDLTILRLAVYEMRWDEDVPTGVAIDEAVEL 110

Query: 134 AHDFFYGDEPKFINAVLDKVS 154
           A  +   D P F+N VL K+ 
Sbjct: 111 AKKYSSEDGPSFVNGVLAKLV 131


>gi|218767806|ref|YP_002342318.1| transcription antitermination protein NusB [Neisseria meningitidis
           Z2491]
 gi|296315043|ref|ZP_06864984.1| transcription antitermination factor NusB [Neisseria polysaccharea
           ATCC 43768]
 gi|313668841|ref|YP_004049125.1| RNA polymerase antitermination factor [Neisseria lactamica ST-640]
 gi|22095968|sp|Q9JVD5|NUSB_NEIMA RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|121051814|emb|CAM08120.1| putative RNA polymerase antitermination factor [Neisseria
           meningitidis Z2491]
 gi|296838251|gb|EFH22189.1| transcription antitermination factor NusB [Neisseria polysaccharea
           ATCC 43768]
 gi|313006303|emb|CBN87766.1| putative RNA polymerase antitermination factor [Neisseria lactamica
           020-06]
 gi|319410056|emb|CBY90390.1| N utilization substance protein B (NusB protein) [Neisseria
           meningitidis WUE 2594]
          Length = 141

 Score =  128 bits (322), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 41/155 (26%), Positives = 59/155 (38%), Gaps = 18/155 (11%)

Query: 10  LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF 69
           +K + RR   R  AVQA+YQ  I   +  EI              +     +   D E F
Sbjct: 1   MKTARRRS--RELAVQAVYQSLINRTAAPEIA-----------KNIREMPDFAKADEELF 47

Query: 70  RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISE 129
             +  G           I   L        L+ I  ++L     EL      P  VII+E
Sbjct: 48  NKLFFGTQTNAAEYIRQIRPLLDRDEK--DLNPIERAVLLTACHELSAMPETPYPVIINE 105

Query: 130 YVCIAHDFFYGDEPKFINAVLDKVS---RKEEIKR 161
            + +   F   D  KF+N +LDK++   R +E KR
Sbjct: 106 AIEVTKTFGGTDGHKFVNGILDKLAAQIRPDEPKR 140


>gi|238926870|ref|ZP_04658630.1| transcription antitermination protein NusB [Selenomonas flueggei
           ATCC 43531]
 gi|238885402|gb|EEQ49040.1| transcription antitermination protein NusB [Selenomonas flueggei
           ATCC 43531]
          Length = 137

 Score =  128 bits (322), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 27/141 (19%), Positives = 56/141 (39%), Gaps = 10/141 (7%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           R  AR AA+  L+Q +        + +         D   D        DL +   ++ G
Sbjct: 3   RRHAREAALLTLFQREFDHDRPPIVAA--------GDLASDAVDGLTEKDLAYANRLVQG 54

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHS-VPVEVIISEYVCIA 134
               +  ID  I  C+ ++W   R+  +  +++R    E+      +   + I+E V +A
Sbjct: 55  TCSVQPEIDAAI-ECMAKEWKLHRMAPVDRNLIRMAYYEMCYQEERIDPPIAINEAVELA 113

Query: 135 HDFFYGDEPKFINAVLDKVSR 155
             +   D  +++N +L  + +
Sbjct: 114 KKYGSDDAGRYVNGILAALQK 134


>gi|15895354|ref|NP_348703.1| transcription antitermination protein NusB [Clostridium
           acetobutylicum ATCC 824]
 gi|22095961|sp|Q97HC8|NUSB_CLOAB RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|15025072|gb|AAK80043.1|AE007710_13 Transcription termination factor NusB [Clostridium acetobutylicum
           ATCC 824]
 gi|325509499|gb|ADZ21135.1| transcription antitermination protein NusB [Clostridium
           acetobutylicum EA 2018]
          Length = 135

 Score =  128 bits (322), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 35/146 (23%), Positives = 65/146 (44%), Gaps = 12/146 (8%)

Query: 15  RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74
            R  +R  A++ L++I I   S ++ I  Y+      +           +D E+   I+ 
Sbjct: 2   NRKKSREVAMKLLFEISINKNSISDTIEHYKENNEIEN-----------LDFEYIERILR 50

Query: 75  GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134
           G+ +  ++ID  I    ++KW  SR+  I  +ILR    E+     +P +V  +E V +A
Sbjct: 51  GIDENMEYIDSKIEES-SKKWKISRISKINITILRMAAYEIFFEKDIPCKVSANEAVELA 109

Query: 135 HDFFYGDEPKFINAVLDKVSRKEEIK 160
             +   +   F+N V+  +    E K
Sbjct: 110 KSYAEENSFSFVNGVIGNLINSSEEK 135


>gi|121634481|ref|YP_974726.1| transcription antitermination protein NusB [Neisseria meningitidis
           FAM18]
 gi|161869623|ref|YP_001598790.1| transcription antitermination protein NusB [Neisseria meningitidis
           053442]
 gi|254804565|ref|YP_003082786.1| transcription termination factor nusB-family protein [Neisseria
           meningitidis alpha14]
 gi|166215703|sp|A1KSU6|NUSB_NEIMF RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|189035894|sp|A9M2W7|NUSB_NEIM0 RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|120866187|emb|CAM09927.1| putative RNA polymerase antitermination factor [Neisseria
           meningitidis FAM18]
 gi|161595176|gb|ABX72836.1| N utilization substance protein B [Neisseria meningitidis 053442]
 gi|254668107|emb|CBA04659.1| transcription termination factor nusB-family protein [Neisseria
           meningitidis alpha14]
 gi|254670531|emb|CBA06337.1| N utilization substance protein B [Neisseria meningitidis alpha153]
 gi|308388870|gb|ADO31190.1| putative RNA polymerase antitermination factor [Neisseria
           meningitidis alpha710]
 gi|325131863|gb|EGC54563.1| transcription antitermination factor NusB [Neisseria meningitidis
           M6190]
 gi|325135725|gb|EGC58337.1| transcription antitermination factor NusB [Neisseria meningitidis
           M0579]
 gi|325137913|gb|EGC60488.1| transcription antitermination factor NusB [Neisseria meningitidis
           ES14902]
 gi|325141944|gb|EGC64384.1| transcription antitermination factor NusB [Neisseria meningitidis
           961-5945]
 gi|325197903|gb|ADY93359.1| transcription antitermination factor NusB [Neisseria meningitidis
           G2136]
 gi|325202521|gb|ADY97975.1| transcription antitermination factor NusB [Neisseria meningitidis
           M01-240149]
 gi|325207729|gb|ADZ03181.1| transcription antitermination factor NusB [Neisseria meningitidis
           NZ-05/33]
          Length = 141

 Score =  128 bits (322), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 41/155 (26%), Positives = 59/155 (38%), Gaps = 18/155 (11%)

Query: 10  LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF 69
           +K + RR   R  AVQA+YQ  I   +  EI              +     +   D E F
Sbjct: 1   MKTARRRS--RELAVQAVYQSLINRTAAPEIA-----------KNIREMPDFAKADEELF 47

Query: 70  RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISE 129
             +  G           I   L        L+ I  ++L     EL      P  VII+E
Sbjct: 48  NKLFFGTQTNAADYIQKIRPLLDRDEK--DLNPIERAVLLTACHELSAMPETPYPVIINE 105

Query: 130 YVCIAHDFFYGDEPKFINAVLDKVS---RKEEIKR 161
            + +   F   D  KF+N +LDK++   R +E KR
Sbjct: 106 AIEVTKTFGGTDGHKFVNGILDKLAAQIRPDEPKR 140


>gi|53804263|ref|YP_114097.1| N utilization substance protein B [Methylococcus capsulatus str.
           Bath]
 gi|81681940|sp|Q607V0|NUSB_METCA RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|53758024|gb|AAU92315.1| N utilization substance protein B [Methylococcus capsulatus str.
           Bath]
          Length = 198

 Score =  128 bits (322), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 41/188 (21%), Positives = 75/188 (39%), Gaps = 45/188 (23%)

Query: 12  LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETY------------------------ 47
           +S  R +AR AAVQA+YQ  +   S  +I  ++                           
Sbjct: 1   MSLARTLARRAAVQAVYQWQLARDSLPDIERQFVEELQLAKSLYRRHAEGFELSPPEREQ 60

Query: 48  ---------RFCADTELDVESVYLH----------VDLEWFRVIIHGVMDRKQHIDLLIS 88
                    R     E++ E V L           V + +F+ ++HGV +    +D  ++
Sbjct: 61  LEELLEKFGRSQGTDEVEEEDVTLEQRASQCQVPDVQVGYFKELLHGVANNLALLDAALA 120

Query: 89  SCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINA 148
             L        +D +  +ILR G  E +     P  VI++E + +A +F      +++N 
Sbjct: 121 KYLDR--PIDEVDPVERAILRIGCYEFMRRPETPYRVILNEAINLAKEFGAAQSYRYVNG 178

Query: 149 VLDKVSRK 156
           +LD+V+ +
Sbjct: 179 ILDRVAHE 186


>gi|15676581|ref|NP_273725.1| transcription antitermination protein NusB [Neisseria meningitidis
           MC58]
 gi|261377912|ref|ZP_05982485.1| transcription antitermination factor NusB [Neisseria cinerea ATCC
           14685]
 gi|261401063|ref|ZP_05987188.1| transcription antitermination factor NusB [Neisseria lactamica ATCC
           23970]
 gi|304388064|ref|ZP_07370193.1| transcription antitermination factor NusB [Neisseria meningitidis
           ATCC 13091]
 gi|22095969|sp|Q9K0D0|NUSB_NEIMB RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|7225910|gb|AAF41101.1| N utilization substance protein B [Neisseria meningitidis MC58]
 gi|254673604|emb|CBA09124.1| N utilization substance protein B [Neisseria meningitidis alpha275]
 gi|269145771|gb|EEZ72189.1| transcription antitermination factor NusB [Neisseria cinerea ATCC
           14685]
 gi|269208952|gb|EEZ75407.1| transcription antitermination factor NusB [Neisseria lactamica ATCC
           23970]
 gi|304337921|gb|EFM04061.1| transcription antitermination factor NusB [Neisseria meningitidis
           ATCC 13091]
 gi|316983655|gb|EFV62636.1| transcription antitermination factor NusB [Neisseria meningitidis
           H44/76]
 gi|325129787|gb|EGC52595.1| transcription antitermination factor NusB [Neisseria meningitidis
           OX99.30304]
 gi|325133802|gb|EGC56458.1| transcription antitermination factor NusB [Neisseria meningitidis
           M13399]
 gi|325139868|gb|EGC62399.1| transcription antitermination factor NusB [Neisseria meningitidis
           CU385]
 gi|325143929|gb|EGC66239.1| transcription antitermination factor NusB [Neisseria meningitidis
           M01-240013]
 gi|325200631|gb|ADY96086.1| transcription antitermination factor NusB [Neisseria meningitidis
           H44/76]
 gi|325203770|gb|ADY99223.1| transcription antitermination factor NusB [Neisseria meningitidis
           M01-240355]
 gi|325206473|gb|ADZ01926.1| transcription antitermination factor NusB [Neisseria meningitidis
           M04-240196]
          Length = 141

 Score =  128 bits (322), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 42/155 (27%), Positives = 60/155 (38%), Gaps = 18/155 (11%)

Query: 10  LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF 69
           +K + RR   R  AVQA+YQ  I   +  EI              +   S +   D E F
Sbjct: 1   MKTARRRS--RELAVQAVYQSLINRTAAPEIA-----------KNIREMSDFAKADEELF 47

Query: 70  RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISE 129
             +  G           I   L        L+ I  ++L     EL      P  VII+E
Sbjct: 48  NKLFFGTQTNAAEYIRQIRPLLDRDEK--DLNPIERAVLLTACHELSAMPETPYPVIINE 105

Query: 130 YVCIAHDFFYGDEPKFINAVLDKVS---RKEEIKR 161
            + +   F   D  KF+N +LDK++   R +E KR
Sbjct: 106 AIEVTKTFGGTDGHKFVNGILDKLAAQIRPDEPKR 140


>gi|319442128|ref|ZP_07991284.1| transcription antitermination protein NusB [Corynebacterium
           variabile DSM 44702]
          Length = 190

 Score =  128 bits (322), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 31/137 (22%), Positives = 62/137 (45%), Gaps = 8/137 (5%)

Query: 24  VQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHI 83
           V  L++ +       EI+ +              E+  +    ++   I+ GV +    I
Sbjct: 21  VDMLFEAEFRDIDPVEIVEDRRELS-------RDEANQVAPVNDYTAQIVGGVAENLDGI 73

Query: 84  DLLISSCLTEKWSFSRLDMILCSILRAGVLELIE-CHSVPVEVIISEYVCIAHDFFYGDE 142
           D  I+  L+ +W+  RL  +  ++LR    EL+     +P +V + E + +A ++ +   
Sbjct: 74  DGAIAGHLSSEWTLDRLPAVDRAVLRVSAWELLHNHDEIPEKVAVDEGIGLAKEYGHDKA 133

Query: 143 PKFINAVLDKVSRKEEI 159
           P +++AVLD +SR   I
Sbjct: 134 PGYVHAVLDGISRSRRI 150


>gi|59800707|ref|YP_207419.1| transcription antitermination protein NusB [Neisseria gonorrhoeae
           FA 1090]
 gi|194097970|ref|YP_002001018.1| transcription antitermination protein NusB [Neisseria gonorrhoeae
           NCCP11945]
 gi|239998442|ref|ZP_04718366.1| transcription antitermination protein NusB [Neisseria gonorrhoeae
           35/02]
 gi|240080146|ref|ZP_04724689.1| transcription antitermination protein NusB [Neisseria gonorrhoeae
           FA19]
 gi|240112360|ref|ZP_04726850.1| transcription antitermination protein NusB [Neisseria gonorrhoeae
           MS11]
 gi|240115100|ref|ZP_04729162.1| transcription antitermination protein NusB [Neisseria gonorrhoeae
           PID18]
 gi|240117383|ref|ZP_04731445.1| transcription antitermination protein NusB [Neisseria gonorrhoeae
           PID1]
 gi|240122940|ref|ZP_04735896.1| transcription antitermination protein NusB [Neisseria gonorrhoeae
           PID332]
 gi|240125192|ref|ZP_04738078.1| transcription antitermination protein NusB [Neisseria gonorrhoeae
           SK-92-679]
 gi|240127648|ref|ZP_04740309.1| transcription antitermination protein NusB [Neisseria gonorrhoeae
           SK-93-1035]
 gi|254493161|ref|ZP_05106332.1| transcription antitermination protein NusB [Neisseria gonorrhoeae
           1291]
 gi|260441085|ref|ZP_05794901.1| transcription antitermination protein NusB [Neisseria gonorrhoeae
           DGI2]
 gi|268594303|ref|ZP_06128470.1| transcription antitermination protein NusB [Neisseria gonorrhoeae
           35/02]
 gi|268596297|ref|ZP_06130464.1| transcription antitermination protein NusB [Neisseria gonorrhoeae
           FA19]
 gi|268598417|ref|ZP_06132584.1| transcription antitermination protein NusB [Neisseria gonorrhoeae
           MS11]
 gi|268600773|ref|ZP_06134940.1| transcription antitermination protein NusB [Neisseria gonorrhoeae
           PID18]
 gi|268603079|ref|ZP_06137246.1| transcription antitermination protein NusB [Neisseria gonorrhoeae
           PID1]
 gi|268681559|ref|ZP_06148421.1| transcription antitermination protein NusB [Neisseria gonorrhoeae
           PID332]
 gi|268683788|ref|ZP_06150650.1| transcription antitermination protein NusB [Neisseria gonorrhoeae
           SK-92-679]
 gi|268686028|ref|ZP_06152890.1| transcription antitermination protein NusB [Neisseria gonorrhoeae
           SK-93-1035]
 gi|291044417|ref|ZP_06570126.1| transcription antitermination protein NusB [Neisseria gonorrhoeae
           DGI2]
 gi|293399595|ref|ZP_06643748.1| transcription antitermination factor NusB [Neisseria gonorrhoeae
           F62]
 gi|75432566|sp|Q5F9Y0|NUSB_NEIG1 RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|238690178|sp|B4RJT3|NUSB_NEIG2 RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|59717602|gb|AAW89007.1| putative transcription termination factor [Neisseria gonorrhoeae FA
           1090]
 gi|193933260|gb|ACF29084.1| transcription antitermination protein NusB [Neisseria gonorrhoeae
           NCCP11945]
 gi|226512201|gb|EEH61546.1| transcription antitermination protein NusB [Neisseria gonorrhoeae
           1291]
 gi|268547692|gb|EEZ43110.1| transcription antitermination protein NusB [Neisseria gonorrhoeae
           35/02]
 gi|268550085|gb|EEZ45104.1| transcription antitermination protein NusB [Neisseria gonorrhoeae
           FA19]
 gi|268582548|gb|EEZ47224.1| transcription antitermination protein NusB [Neisseria gonorrhoeae
           MS11]
 gi|268584904|gb|EEZ49580.1| transcription antitermination protein NusB [Neisseria gonorrhoeae
           PID18]
 gi|268587210|gb|EEZ51886.1| transcription antitermination protein NusB [Neisseria gonorrhoeae
           PID1]
 gi|268621843|gb|EEZ54243.1| transcription antitermination protein NusB [Neisseria gonorrhoeae
           PID332]
 gi|268624072|gb|EEZ56472.1| transcription antitermination protein NusB [Neisseria gonorrhoeae
           SK-92-679]
 gi|268626312|gb|EEZ58712.1| transcription antitermination protein NusB [Neisseria gonorrhoeae
           SK-93-1035]
 gi|291011311|gb|EFE03307.1| transcription antitermination protein NusB [Neisseria gonorrhoeae
           DGI2]
 gi|291610164|gb|EFF39286.1| transcription antitermination factor NusB [Neisseria gonorrhoeae
           F62]
 gi|317163726|gb|ADV07267.1| transcription antitermination protein NusB [Neisseria gonorrhoeae
           TCDC-NG08107]
          Length = 141

 Score =  128 bits (322), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 42/155 (27%), Positives = 60/155 (38%), Gaps = 18/155 (11%)

Query: 10  LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF 69
           +K + RR   R  AVQA+YQ  I   +  EI              +   S +   D E F
Sbjct: 1   MKTARRRS--RELAVQAVYQSLINRTAAPEIA-----------KNIREMSDFAKADEELF 47

Query: 70  RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISE 129
             +  G           I   L        L+ I  ++L     EL      P  VII+E
Sbjct: 48  NKLFFGTQTNAADYIQKIRPLLDRDEK--DLNPIERAVLLTACHELSAMPETPYPVIINE 105

Query: 130 YVCIAHDFFYGDEPKFINAVLDKVS---RKEEIKR 161
            + +   F   D  KF+N +LDK++   R +E KR
Sbjct: 106 AIEVTKTFGGTDGHKFVNGILDKLAAQIRPDEPKR 140


>gi|295090868|emb|CBK76975.1| transcription antitermination factor NusB [Clostridium cf.
           saccharolyticum K10]
          Length = 147

 Score =  128 bits (322), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 35/146 (23%), Positives = 61/146 (41%), Gaps = 8/146 (5%)

Query: 16  RGIARLAAVQALYQIDIIGC-STTEIISEYETYRFCADTELDVESVYLHV------DLEW 68
           R   R    + L+  D      T E I +Y T     D   D     +H       D  +
Sbjct: 3   RRELREHCFKLLFCADFYPEGETKEQIEQYFTEPREDDYTSDGVYELIHCPELDVYDSGY 62

Query: 69  FRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIIS 128
            +  +  V+++   +D  I+    + W+  R+  +  +ILR  + E+     VP +V I+
Sbjct: 63  VKNKVEKVLEKLTELDTAINET-AKGWTTRRMGKVELTILRLALFEIRYDEEVPDKVAIN 121

Query: 129 EYVCIAHDFFYGDEPKFINAVLDKVS 154
           E V +A  F   + P F+N +L K+ 
Sbjct: 122 EAVELAKKFGGDESPAFVNGILAKLV 147


>gi|307704282|ref|ZP_07641201.1| transcription antitermination factor NusB [Streptococcus mitis
           SK597]
 gi|307622193|gb|EFO01211.1| transcription antitermination factor NusB [Streptococcus mitis
           SK597]
          Length = 141

 Score =  128 bits (322), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 31/143 (21%), Positives = 59/143 (41%), Gaps = 11/143 (7%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           R   R  A QAL  ++    +  E    +       D ++ +          +   ++ G
Sbjct: 9   RRELRKCAFQALMSLEFG--TDMETACHFAYTHDREDADVQIP--------AFLLNLVSG 58

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
           V  +K  +D  I+  L   W   RL ++  ++LR G+ E+      P  V ++E + +A 
Sbjct: 59  VQAQKDELDKQINQHLKSGWIVERLTLVEKNLLRLGIFEITSF-DTPQLVAVNEAIELAK 117

Query: 136 DFFYGDEPKFINAVLDKVSRKEE 158
           +F      +FIN +L +   +E 
Sbjct: 118 NFSDQKSARFINGLLSQFVTEEN 140


>gi|315634386|ref|ZP_07889673.1| transcription termination/antitermination factor NusB
           [Aggregatibacter segnis ATCC 33393]
 gi|315476976|gb|EFU67721.1| transcription termination/antitermination factor NusB
           [Aggregatibacter segnis ATCC 33393]
          Length = 102

 Score =  127 bits (321), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 29/97 (29%), Positives = 47/97 (48%), Gaps = 2/97 (2%)

Query: 58  ESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIE 117
           E     VD  +FR +    ++  + ++  +   L        LD I  +ILR  V EL  
Sbjct: 3   EQDMKGVDTPYFRKLFRQTVENVEAVERTMQGYLDRG--LEELDPIEKAILRLAVYELQF 60

Query: 118 CHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVS 154
              VP +V+I+E + +A  F   +  K+IN VLDK++
Sbjct: 61  EADVPYKVVINEAIEVAKVFGADESHKYINGVLDKIA 97


>gi|283797531|ref|ZP_06346684.1| transcription antitermination factor NusB [Clostridium sp. M62/1]
 gi|291074900|gb|EFE12264.1| transcription antitermination factor NusB [Clostridium sp. M62/1]
          Length = 147

 Score =  127 bits (321), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 36/146 (24%), Positives = 61/146 (41%), Gaps = 8/146 (5%)

Query: 16  RGIARLAAVQALYQIDIIGC-STTEIISEYETYRFCADTELDVESVYLHV------DLEW 68
           R   R    + L+  D      T E I +Y T     D   D     +H       D  +
Sbjct: 3   RRELREHCFKLLFCADFYPEGETKEQIEQYFTEPREDDYTSDGVYELIHCPELDVYDSGY 62

Query: 69  FRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIIS 128
            +  +  V+++   +D  I+    E W+  R+  +  +ILR  + E+     VP +V I+
Sbjct: 63  VKNKVEKVLEKLTELDTAINET-AEGWTTRRMGKVELTILRLALFEIRYDEEVPDKVAIN 121

Query: 129 EYVCIAHDFFYGDEPKFINAVLDKVS 154
           E V +A  F   + P F+N +L K+ 
Sbjct: 122 EAVELAKKFGGDESPAFVNGILAKLV 147


>gi|262202262|ref|YP_003273470.1| transcription antitermination factor NusB [Gordonia bronchialis DSM
           43247]
 gi|262085609|gb|ACY21577.1| transcription antitermination factor NusB [Gordonia bronchialis DSM
           43247]
          Length = 163

 Score =  127 bits (321), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 39/145 (26%), Positives = 67/145 (46%), Gaps = 9/145 (6%)

Query: 10  LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF 69
           +K    R  AR  AV  L++ +    S  ++++E        ++        +    ++ 
Sbjct: 1   MKQPGTRHKARRRAVDILFEAEAKQVSPAQLVAERRELVRSDES--------VGAIHDYT 52

Query: 70  RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISE 129
             +I G+ D ++ ID +ISS L  +W+  RL  +  +ILR    EL     V   VI+ E
Sbjct: 53  ARVIEGLADDQEQIDSVISSHL-REWTLPRLPAVDRAILRLATWELFNSVDVDTVVIVDE 111

Query: 130 YVCIAHDFFYGDEPKFINAVLDKVS 154
            V +A +    D P F+N VL K++
Sbjct: 112 AVELAKELSTDDSPAFVNGVLAKIA 136


>gi|227499084|ref|ZP_03929221.1| NusB antitermination factor [Acidaminococcus sp. D21]
 gi|226904533|gb|EEH90451.1| NusB antitermination factor [Acidaminococcus sp. D21]
          Length = 140

 Score =  127 bits (321), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 31/143 (21%), Positives = 60/143 (41%), Gaps = 11/143 (7%)

Query: 16  RGIARLAAVQALYQIDII-GCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74
           R  AR  A+++L+ +D     S  + +            E +        D  +   ++ 
Sbjct: 3   RREARTLAMKSLFSLDFTTDVSPLDTVKALL--------EDEDTPALPKDDENYAAALVT 54

Query: 75  GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECH-SVPVEVIISEYVCI 133
           G  +  + ID ++ + L+++W   R+  +  ++LR    E+      +   + ISE V I
Sbjct: 55  GTREHLEAIDSVLDT-LSDEWKVKRMAGVDRNLLRMAAFEMYFSPQKIAPAIAISEAVEI 113

Query: 134 AHDFFYGDEPKFINAVLDKVSRK 156
           A  +   D P FIN +L  + R 
Sbjct: 114 AKIYGGDDSPHFINGLLGTLVRN 136


>gi|296111669|ref|YP_003622051.1| transcription antitermination protein NusB [Leuconostoc kimchii
           IMSNU 11154]
 gi|295833201|gb|ADG41082.1| transcription antitermination protein NusB [Leuconostoc kimchii
           IMSNU 11154]
          Length = 138

 Score =  127 bits (321), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 35/139 (25%), Positives = 62/139 (44%), Gaps = 14/139 (10%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           R  +R AA Q L+ ++     +  I   Y+      D +            ++   +++G
Sbjct: 6   RHESRQAAFQVLFALE-KDPQSNNIDKLYDIVLAGKDYD------------DYLPRLVNG 52

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
           ++  K  +D  I++ L + W+ +RL+     ILR  V EL+    VP +V I E + +  
Sbjct: 53  ILGTKTELDEQIAAHLADGWAINRLNKADLIILRLAVYELLNNL-VPYKVAIDEALILTK 111

Query: 136 DFFYGDEPKFINAVLDKVS 154
            F   D  KF+N VL   +
Sbjct: 112 TFSDEDSRKFVNGVLKNFA 130


>gi|331002443|ref|ZP_08325961.1| transcription antitermination factor NusB [Lachnospiraceae oral
           taxon 107 str. F0167]
 gi|330410259|gb|EGG89693.1| transcription antitermination factor NusB [Lachnospiraceae oral
           taxon 107 str. F0167]
          Length = 146

 Score =  127 bits (321), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 41/147 (27%), Positives = 68/147 (46%), Gaps = 8/147 (5%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFC-----ADTELDVESVYLHVDLEWFR 70
           R + R    + L  +D       EI  + + Y         D EL  ++ +   D+E+ +
Sbjct: 3   RHLLREHCFKILLGLDFYAD--EEIKVQTDNYFESPSLEDEDDELIHDANFSDGDIEYIK 60

Query: 71  VIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEY 130
                VMD K  ID +IS  L++ W   R+  +  +ILR  + E+     +PV V I+E 
Sbjct: 61  SKAMLVMDNKSEIDKIISE-LSQGWKLERIGRVERNILRLAIAEMKYDDDIPVSVAINEA 119

Query: 131 VCIAHDFFYGDEPKFINAVLDKVSRKE 157
           V +A  +   +   F+NA+L KV  +E
Sbjct: 120 VELAKAYGRDESYSFVNAILSKVGIEE 146


>gi|154498049|ref|ZP_02036427.1| hypothetical protein BACCAP_02030 [Bacteroides capillosus ATCC
           29799]
 gi|150273039|gb|EDN00196.1| hypothetical protein BACCAP_02030 [Bacteroides capillosus ATCC
           29799]
          Length = 223

 Score =  127 bits (321), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 37/163 (22%), Positives = 66/163 (40%), Gaps = 8/163 (4%)

Query: 2   TIQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISE---YETYRFCADTELDVE 58
           T +D  +++     R  AR  AV   +++     +  E++       T+    + E    
Sbjct: 40  TARDGGRNM----TRTNAREIAVHLTFELSFTNQTADELLDTALTRATFALIGEEEPLYA 95

Query: 59  SVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIEC 118
                   E+   ++ GV      +D  IS      W+FSR+  I  +++R  + E++  
Sbjct: 96  EYPNAKQREYISELVRGVYFHCPELDDYISRY-AIGWTFSRIPRIAVAVMRVAMYEILYM 154

Query: 119 HSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKR 161
             VP    I+E + IA  +   +   FIN +L    RKE I  
Sbjct: 155 QDVPNAAAINEALEIAKGYETPEVVSFINGILGSFVRKESIPE 197


>gi|253578527|ref|ZP_04855799.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA]
 gi|251850845|gb|EES78803.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA]
          Length = 140

 Score =  127 bits (321), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 36/148 (24%), Positives = 61/148 (41%), Gaps = 10/148 (6%)

Query: 15  RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74
           RR   R    + L+   +   ++ E +SE  +  F      D        D E+      
Sbjct: 2   RRREQREHIFKLLF---MTEFNSEEEMSEQLSLYF------DTLEELSEKDQEYMSRKYR 52

Query: 75  GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134
            V+++   ID L++   +  W   R+  +  + LR  V EL     VP  V I+E V +A
Sbjct: 53  HVLEKLDEIDALLNET-SNGWKTKRMSRVDLTALRLAVYELKYDKDVPTGVAINEAVELA 111

Query: 135 HDFFYGDEPKFINAVLDKVSRKEEIKRS 162
             F       F+N +L K++  E  ++S
Sbjct: 112 KRFGGETSGSFVNGILGKIANSESEEKS 139


>gi|34556732|ref|NP_906547.1| transcription antitermination protein NusB [Wolinella succinogenes
           DSM 1740]
 gi|39931695|sp|Q7MAE9|NUSB_WOLSU RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|34482446|emb|CAE09447.1| TRANSCRIPTION TERMINATION PROTEIN [Wolinella succinogenes]
          Length = 135

 Score =  127 bits (321), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 38/138 (27%), Positives = 58/138 (42%), Gaps = 13/138 (9%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           R  AR A V  LY  D+      +   E    +   + +            E+   +  G
Sbjct: 4   RAQAREAVVSLLYAYDMGNTEIRKFAIELLEEKRIKNRQQ-----------EFALELFDG 52

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
            +     ID  I   L E W FSR+  +  +ILR G  E++    V   VII+E V ++ 
Sbjct: 53  TIAHLGEIDEEIKKHLKE-WDFSRIGDMERAILRLGTFEIVYSG-VDRAVIINEAVELSK 110

Query: 136 DFFYGDEPKFINAVLDKV 153
            F   + P+F+N VLD +
Sbjct: 111 TFGNDNSPRFVNGVLDAL 128


>gi|295396131|ref|ZP_06806314.1| transcription antitermination factor NusB [Brevibacterium
           mcbrellneri ATCC 49030]
 gi|294971072|gb|EFG46964.1| transcription antitermination factor NusB [Brevibacterium
           mcbrellneri ATCC 49030]
          Length = 134

 Score =  127 bits (320), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 34/135 (25%), Positives = 65/135 (48%), Gaps = 14/135 (10%)

Query: 24  VQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHI 83
           ++ L++ +       E+I   E      D E  +          + R I+ GV+  +  +
Sbjct: 12  LELLFEAEARNLPEAELIKLREN-----DEEYPL--------RPYSREIVDGVVTHRAQL 58

Query: 84  DLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEP 143
           D LIS+     W+  R+  +  ++LR G+ E++    V   V I E V +A ++   D P
Sbjct: 59  DELISTY-AHGWTLERMPRVDRAVLRIGLWEILYNDEVDDPVAIDEAVTLAKEYSTDDSP 117

Query: 144 KFINAVLDKVSRKEE 158
            F+NA+LD++S+ ++
Sbjct: 118 AFVNALLDRISKLKD 132


>gi|242309730|ref|ZP_04808885.1| transcription antitermination protein NusB [Helicobacter pullorum
           MIT 98-5489]
 gi|239523731|gb|EEQ63597.1| transcription antitermination protein NusB [Helicobacter pullorum
           MIT 98-5489]
          Length = 148

 Score =  127 bits (320), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 42/143 (29%), Positives = 67/143 (46%), Gaps = 13/143 (9%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           R  AR   VQ LY       S  E I ++         E+  E    +   E+   +  G
Sbjct: 4   RSHAREVVVQLLYAY----GSGNEKIGKFAD-------EIFEEQKIKNNQKEFATSLFEG 52

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
           V+   + +DL IS  L + W FS++  +  +ILR GV E+I  H +   + I+E + +A 
Sbjct: 53  VIANLEALDLRISHQL-KDWDFSKIGDMEKAILRLGVYEIIFNH-LSKAIAINEALELAK 110

Query: 136 DFFYGDEPKFINAVLDKVSRKEE 158
            F   +  KFIN VLD +++  +
Sbjct: 111 SFGNENSAKFINGVLDGIAKNLQ 133


>gi|312880056|ref|ZP_07739856.1| NusB antitermination factor [Aminomonas paucivorans DSM 12260]
 gi|310783347|gb|EFQ23745.1| NusB antitermination factor [Aminomonas paucivorans DSM 12260]
          Length = 156

 Score =  127 bits (320), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 34/152 (22%), Positives = 65/152 (42%), Gaps = 14/152 (9%)

Query: 12  LSHRRGIARLAAVQALYQIDIIG-CSTTEIISEYETYRFCADTELDVESVYLHVDLEWFR 70
           +  +R  +R  A+Q  Y++D+    S  ++++ +       +              ++  
Sbjct: 6   MPQKRRRSREIALQLGYEMDVRERLSVEDVLAAFPLEEEDPEI------------RDYAC 53

Query: 71  VIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEY 130
            ++  +   K  ID L+   L   W   R+  +  + +R  +LE +    VP+ V ISE 
Sbjct: 54  ALVSALDRHKGAIDELLREQLV-GWRPERMVAVDRAAIRLALLEGVFEKLVPLAVAISEA 112

Query: 131 VCIAHDFFYGDEPKFINAVLDKVSRKEEIKRS 162
           V +A  F   D  +F+N VL ++ R  E K  
Sbjct: 113 VELAKTFGTEDSGRFVNGVLGRIVRSLEPKAG 144


>gi|332185633|ref|ZP_08387381.1| transcription antitermination factor NusB [Sphingomonas sp. S17]
 gi|332014611|gb|EGI56668.1| transcription antitermination factor NusB [Sphingomonas sp. S17]
          Length = 151

 Score =  127 bits (320), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 48/128 (37%), Positives = 70/128 (54%), Gaps = 3/128 (2%)

Query: 28  YQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLI 87
           YQ D+       ++ E+  +R  A  E   +  Y   D+++F  I+ GV  R   IDL+I
Sbjct: 23  YQHDMEKTPLAALLHEFHNHRIGATIE---DVEYADADIDFFDDIVKGVHARLGEIDLMI 79

Query: 88  SSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFIN 147
              L   W+ SRLD  + +ILRAG  ELI    VPV  +ISEYV +AH F+   E  F+N
Sbjct: 80  EGKLASGWTLSRLDRPMKAILRAGTYELIARRDVPVGAVISEYVDVAHAFYEKRESGFVN 139

Query: 148 AVLDKVSR 155
            +LD +++
Sbjct: 140 GLLDAIAK 147


>gi|289450308|ref|YP_003475512.1| transcription antitermination factor NusB [Clostridiales genomosp.
           BVAB3 str. UPII9-5]
 gi|289184855|gb|ADC91280.1| transcription antitermination factor NusB [Clostridiales genomosp.
           BVAB3 str. UPII9-5]
          Length = 151

 Score =  127 bits (320), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 40/144 (27%), Positives = 69/144 (47%), Gaps = 9/144 (6%)

Query: 15  RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74
           +R  AR  A + LYQI +    T +I ++ E +          E  +   D+ +   ++ 
Sbjct: 2   KRREAREQAFKFLYQIQVQ---TDDIPAQREYFLRS----CRDEFGFEDADISYITGVVD 54

Query: 75  GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134
           GV+      D  IS+CL +KW+  RL  +  +ILR  + E+   H V   +I +E V +A
Sbjct: 55  GVIKETAEFDRQISTCL-KKWTVDRLPCVDLAILRLALYEIKYEH-VAFSIIANEAVLLA 112

Query: 135 HDFFYGDEPKFINAVLDKVSRKEE 158
             +   +   +IN +L K+  KE+
Sbjct: 113 KKYSTEESRSYINGILGKLMPKED 136


>gi|160938277|ref|ZP_02085632.1| hypothetical protein CLOBOL_03173 [Clostridium bolteae ATCC
           BAA-613]
 gi|158438650|gb|EDP16407.1| hypothetical protein CLOBOL_03173 [Clostridium bolteae ATCC
           BAA-613]
          Length = 272

 Score =  127 bits (320), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 30/147 (20%), Positives = 59/147 (40%), Gaps = 9/147 (6%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVY--------LHVDLE 67
           R   R    + L+  D        I    + ++   + ++D   +            D E
Sbjct: 52  RRELREHCFKMLFSADFYPTQEEAIAQLGQYFQSPEEDDVDESGILQVLHKVELKEADSE 111

Query: 68  WFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVII 127
           + +     +M++   ID  ++      W   R+  +  +ILR  + E++   ++P +V I
Sbjct: 112 YLQARTANIMEKIPEIDEKLNQA-AAGWKTKRMGKVELTILRLALYEMLHDDAIPEKVSI 170

Query: 128 SEYVCIAHDFFYGDEPKFINAVLDKVS 154
           +E V +A  F   D P F+N +L K  
Sbjct: 171 NEAVELAKKFGGNDSPSFVNGILAKFV 197


>gi|307710564|ref|ZP_07646999.1| transcription antitermination factor NusB [Streptococcus mitis
           SK564]
 gi|307618672|gb|EFN97813.1| transcription antitermination factor NusB [Streptococcus mitis
           SK564]
          Length = 141

 Score =  127 bits (319), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 33/143 (23%), Positives = 61/143 (42%), Gaps = 11/143 (7%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           R   R  A QAL  ++      T     Y   R  AD ++            +   ++ G
Sbjct: 9   RRELRKCAFQALLSLEFGTDMETACRFAYTHDREDADVQIP----------AFLLNLVSG 58

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
           +  +K+ +D  I+  L   W+  RL ++  ++LR G+ E+      P  V ++E + +A 
Sbjct: 59  IQAQKEELDKQINQHLKSGWTVERLTLVEKNLLRLGIFEITSF-DTPQLVAVNEAIELAK 117

Query: 136 DFFYGDEPKFINAVLDKVSRKEE 158
           +F      +FIN +L +   +E 
Sbjct: 118 NFSDQKSARFINGLLSQFVTEEN 140


>gi|281413741|ref|ZP_06245483.1| transcription antitermination factor NusB [Micrococcus luteus NCTC
           2665]
          Length = 125

 Score =  127 bits (319), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 34/130 (26%), Positives = 64/130 (49%), Gaps = 14/130 (10%)

Query: 24  VQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHI 83
           ++ L++ +  G + +E I    T R   D +++           + + ++ GV+  ++ +
Sbjct: 1   MEILFEAEQRGSTVSEGIR---TRRESTDLQVN----------AYTQRLVEGVIADQERL 47

Query: 84  DLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEP 143
           D  +SS  +  WS  R+  +  +ILR G  EL+    VP  V ISE V +A      D P
Sbjct: 48  DEALSSY-SRGWSLDRMPAVDRAILRVGAWELLFQDDVPDAVAISEAVALAAQLSTDDSP 106

Query: 144 KFINAVLDKV 153
           +F+N +L ++
Sbjct: 107 EFVNGLLGRL 116


>gi|322436555|ref|YP_004218767.1| NusB antitermination factor [Acidobacterium sp. MP5ACTX9]
 gi|321164282|gb|ADW69987.1| NusB antitermination factor [Acidobacterium sp. MP5ACTX9]
          Length = 140

 Score =  127 bits (319), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 31/148 (20%), Positives = 62/148 (41%), Gaps = 11/148 (7%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           R  +R   +Q L+Q D+   +  ++   + +     D E             +   +   
Sbjct: 4   RRKSRELTMQMLFQGDLGKQTPEQVTKLFWSSVTDVDEETRG----------FAEDLYRI 53

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
              R   ID LI    ++ W   R+ ++  ++LR+ + E++     P  ++I+E + +A 
Sbjct: 54  ATSRGTEIDALIEEH-SQNWRLERMPVVDRNLLRSAIAEMLGFPKTPHAIVINESLEVAR 112

Query: 136 DFFYGDEPKFINAVLDKVSRKEEIKRSG 163
            +   +   F+N VLD V+R     R G
Sbjct: 113 RYAAPESIHFLNGVLDAVARDLLKARLG 140


>gi|299139121|ref|ZP_07032297.1| NusB antitermination factor [Acidobacterium sp. MP5ACTX8]
 gi|298598801|gb|EFI54963.1| NusB antitermination factor [Acidobacterium sp. MP5ACTX8]
          Length = 141

 Score =  127 bits (319), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 34/141 (24%), Positives = 59/141 (41%), Gaps = 11/141 (7%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           R  +R  A+Q L+Q D+      E+   +   R   D E             +   +   
Sbjct: 4   RRKSRELAMQMLFQGDLGKQKPEEVEELFWASREDVDDETRG----------FADDLHRL 53

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
              R+  +D LI     + W   R+ ++  ++LR  V E++     P  VII+E + IA 
Sbjct: 54  ATQREDEVDALIQKH-AQNWRLERMPVVDRNLLRTAVAEMVGYPKTPAAVIINETLEIAR 112

Query: 136 DFFYGDEPKFINAVLDKVSRK 156
            +   +   F+N VLD + R+
Sbjct: 113 RYAAPESIHFLNGVLDAIGRE 133


>gi|303232700|ref|ZP_07319385.1| transcription antitermination factor NusB [Atopobium vaginae
           PB189-T1-4]
 gi|302481186|gb|EFL44261.1| transcription antitermination factor NusB [Atopobium vaginae
           PB189-T1-4]
          Length = 192

 Score =  127 bits (319), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 37/147 (25%), Positives = 66/147 (44%), Gaps = 14/147 (9%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           R  AR  A+Q L+Q +       +II+    +    +  L+          E+ R +  G
Sbjct: 10  RTRARSHALQLLFQAESRSMRVADIIN---AHYLITEGPLE----------EFARTLALG 56

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
               +  +D LI+   T  W+ +RL  +  +I+R  + E++    V V V I+E+V +A 
Sbjct: 57  ADAVRDKLDALIADTAT-NWNVTRLLSVDRNIIRLALFEMLHVDDVDVAVTINEFVILAK 115

Query: 136 DFFYGDEPKFINAVLDKVSRKEEIKRS 162
            +   D   F+N VL +V+R+      
Sbjct: 116 AYGTDDSAAFVNGVLGQVARRLSAGED 142


>gi|212716890|ref|ZP_03325018.1| hypothetical protein BIFCAT_01834 [Bifidobacterium catenulatum DSM
           16992]
 gi|225350765|ref|ZP_03741788.1| hypothetical protein BIFPSEUDO_02334 [Bifidobacterium
           pseudocatenulatum DSM 20438]
 gi|212660175|gb|EEB20750.1| hypothetical protein BIFCAT_01834 [Bifidobacterium catenulatum DSM
           16992]
 gi|225158221|gb|EEG71463.1| hypothetical protein BIFPSEUDO_02334 [Bifidobacterium
           pseudocatenulatum DSM 20438]
          Length = 147

 Score =  126 bits (318), Expect = 8e-28,   Method: Composition-based stats.
 Identities = 31/135 (22%), Positives = 53/135 (39%), Gaps = 12/135 (8%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           R  AR  A+  LY+ D  G     +++E              +        E+   I+ G
Sbjct: 3   RSTARKRALNTLYEADEKGQDILSLLAERIE-----------QPGAQTPLPEYAIEIVRG 51

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
           V +    ID  +    +  W   R+ ++  +ILR    E++    VP  V I E + +A 
Sbjct: 52  VAEHIAAIDSTLDEH-STGWKVKRMGVVDRNILRIAAWEIMFNDDVPNMVAIDEALGLAK 110

Query: 136 DFFYGDEPKFINAVL 150
                + P FI+ +L
Sbjct: 111 TLCDDESPAFIHGLL 125


>gi|310658653|ref|YP_003936374.1| transcription antitermination protein [Clostridium sticklandii DSM
           519]
 gi|308825431|emb|CBH21469.1| transcription antitermination protein [Clostridium sticklandii]
          Length = 133

 Score =  126 bits (318), Expect = 8e-28,   Method: Composition-based stats.
 Identities = 30/144 (20%), Positives = 63/144 (43%), Gaps = 12/144 (8%)

Query: 15  RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74
           +R   R AAV+  Y++DI      +    +             E+  + +   + + +  
Sbjct: 2   KRKELREAAVKLFYEMDIQKTFEHKFYKNFLA-----------ENELVALKDNYLKEVFD 50

Query: 75  GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134
             +  + +ID +I    +  W   R+  +  SILR  + E++    +P +V I+E + +A
Sbjct: 51  NFLLNRDNIDDIIQKS-STSWDIKRIAKVDLSILRVAITEILYLSDIPDKVSINEAIDLA 109

Query: 135 HDFFYGDEPKFINAVLDKVSRKEE 158
             +   +  KF+N +L K+ + E 
Sbjct: 110 KKYGDENSYKFVNGLLGKIVKNEN 133


>gi|306820223|ref|ZP_07453865.1| transcription antitermination factor NusB [Eubacterium yurii subsp.
           margaretiae ATCC 43715]
 gi|304551720|gb|EFM39669.1| transcription antitermination factor NusB [Eubacterium yurii subsp.
           margaretiae ATCC 43715]
          Length = 212

 Score =  126 bits (318), Expect = 8e-28,   Method: Composition-based stats.
 Identities = 45/202 (22%), Positives = 75/202 (37%), Gaps = 53/202 (26%)

Query: 1   MTIQDNKKDLKLSHRRGIARLAAVQALYQIDIIGC------------------------- 35
           M + +NKK+  +S  R   R   +Q LYQ+DI                            
Sbjct: 1   MNVDENKKNPNMSLSRKRQRQNVMQMLYQMDIQDNFTKSATINIDKKLKDEKYEISLDNC 60

Query: 36  ----------------STTEIISEYETYRFCADTEL-----------DVESVYLHVDLEW 68
                           S  +I   +E   F    +L             E++    D+ +
Sbjct: 61  NNIENIEHVKKLIADFSGEKIPENFELGDFIEQDDLITYEVTDTYSYSQENLKNFTDIGY 120

Query: 69  FRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIIS 128
            ++ I   +D K  ID  IS  L+EKW+  RL  I  +++R  + E+     +P +V I+
Sbjct: 121 IKLFISSFLDNKDLIDSEISQVLSEKWTVKRLSKIDLALIRTAITEIKY-LDIPYKVAIN 179

Query: 129 EYVCIAHDFFYGDEPKFINAVL 150
           E + +A  +       FIN +L
Sbjct: 180 EALELAKKYSDEKSSSFINGIL 201


>gi|224531581|ref|ZP_03672213.1| transcription antitermination factor NusB [Borrelia valaisiana
           VS116]
 gi|224511046|gb|EEF81452.1| transcription antitermination factor NusB [Borrelia valaisiana
           VS116]
          Length = 145

 Score =  126 bits (318), Expect = 8e-28,   Method: Composition-based stats.
 Identities = 39/143 (27%), Positives = 67/143 (46%), Gaps = 9/143 (6%)

Query: 17  GIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGV 76
              R+ A Q +Y IDI   +  +I   +       D  LD+E+  +     ++  +++G 
Sbjct: 5   HEVRVLAFQKIYSIDINQSAMDDIFDIFN----IEDKGLDIENESIK---SFYSSLVNGT 57

Query: 77  MDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECH-SVPVEVIISEYVCIAH 135
            +  +HID LI   ++  WS  R+D +  +ILR GV  L   +       +I E + IA 
Sbjct: 58  FNNLEHIDNLIRD-ISLNWSLDRMDKVDLAILRMGVYSLKFQNFENSKRAVIDEAILIAK 116

Query: 136 DFFYGDEPKFINAVLDKVSRKEE 158
            +   +  KFIN +LD + +  E
Sbjct: 117 KYGSKNSYKFINGILDALLKNME 139


>gi|325295064|ref|YP_004281578.1| NusB antitermination factor [Desulfurobacterium thermolithotrophum
           DSM 11699]
 gi|325065512|gb|ADY73519.1| NusB antitermination factor [Desulfurobacterium thermolithotrophum
           DSM 11699]
          Length = 140

 Score =  126 bits (318), Expect = 9e-28,   Method: Composition-based stats.
 Identities = 49/159 (30%), Positives = 73/159 (45%), Gaps = 22/159 (13%)

Query: 1   MTIQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESV 60
           MT +D KK          AR  A   +YQ D+ G S  EI   Y         E + ES 
Sbjct: 1   MTNRDKKK----------AREHAYLMMYQYDLGGLSPEEIAFNYW--------EDNKESE 42

Query: 61  YLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHS 120
            +     +   +    ++  ++ID+ IS  L + W  SRL  +  SILR    E+     
Sbjct: 43  EIKQMATY---LFKKTVENLKNIDIEISRHLKKGWLISRLMPMDRSILRVATYEISNESF 99

Query: 121 VPVEVIISEYVCIAHDFF-YGDEPKFINAVLDKVSRKEE 158
            P+E +I++ V  A  +      PKFINA+LDKV++ +E
Sbjct: 100 SPIEAVINDAVDAAKFYGEDEKSPKFINAILDKVAKNKE 138


>gi|315924276|ref|ZP_07920500.1| N utilization substance protein B [Pseudoramibacter alactolyticus
           ATCC 23263]
 gi|315622437|gb|EFV02394.1| N utilization substance protein B [Pseudoramibacter alactolyticus
           ATCC 23263]
          Length = 158

 Score =  126 bits (318), Expect = 9e-28,   Method: Composition-based stats.
 Identities = 35/145 (24%), Positives = 65/145 (44%), Gaps = 8/145 (5%)

Query: 9   DLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEW 68
           ++K  +RR   R  A++A++QI+          ++       A  + D    + H    +
Sbjct: 3   EVKKQNRRHE-RELALRAVFQIEFHQD------AQDLQKGIAAVIDSDAGFEHDHGSSGY 55

Query: 69  FRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIIS 128
              ++  V+D    ID  I+  L + W   RL     +ILR    E+      P+E+ I+
Sbjct: 56  AAYLVDVVVDHLAAIDERIAQYLRKDWHMDRLPGAEKAILRVATAEMCY-LDQPLEIAIN 114

Query: 129 EYVCIAHDFFYGDEPKFINAVLDKV 153
           E V +A  +   D P++IN +L+ +
Sbjct: 115 EAVELAKRYCDEDAPRYINGILNNL 139


>gi|323484853|ref|ZP_08090209.1| transcription antitermination factor NusB [Clostridium symbiosum
           WAL-14163]
 gi|323693777|ref|ZP_08107972.1| transcription antitermination factor NusB [Clostridium symbiosum
           WAL-14673]
 gi|323401849|gb|EGA94191.1| transcription antitermination factor NusB [Clostridium symbiosum
           WAL-14163]
 gi|323502163|gb|EGB18030.1| transcription antitermination factor NusB [Clostridium symbiosum
           WAL-14673]
          Length = 171

 Score =  126 bits (318), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 36/146 (24%), Positives = 62/146 (42%), Gaps = 8/146 (5%)

Query: 16  RGIARLAAVQALYQIDIIGC-STTEIISEYETYRFCADTELDVESVYLHV------DLEW 68
           R   R    + L+  D      T E + EY T      +    ES  LH       D  +
Sbjct: 27  RRELREHCFKLLFCADFYPEGETKEQMEEYFTEPVEEVSAPGGESEILHSPALDVFDGGY 86

Query: 69  FRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIIS 128
               +  ++++   +D  I+  + + W+  R+  +  +ILR  + E+     VP +V I+
Sbjct: 87  VTNKVERIIEKIPDLDSRINE-IAKGWTTKRMGKVELTILRLALFEIQYDEDVPEKVAIN 145

Query: 129 EYVCIAHDFFYGDEPKFINAVLDKVS 154
           E V +A  F   D P F+N +L K+ 
Sbjct: 146 EAVELAKKFGGDDSPSFVNGILAKLV 171


>gi|291545446|emb|CBL18554.1| transcription antitermination factor NusB [Ruminococcus sp. SR1/5]
          Length = 158

 Score =  126 bits (317), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 33/140 (23%), Positives = 59/140 (42%), Gaps = 10/140 (7%)

Query: 15  RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74
           RR   R    + ++   +   ++ E ++E  +  F    EL  +      D E+ +    
Sbjct: 2   RRREQREHVFKLMF---MTEFNSEEEMTEQLSLYFEGLGELSEQ------DQEYMKKKYA 52

Query: 75  GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134
            V +  + ID  ++S  +  W   R+  +  + LR  V E+     VP  V I+E V +A
Sbjct: 53  HVKEHLEEIDAQLNSA-SRGWKTKRMSRVDLAALRLAVYEMEYDADVPTGVAINEAVELA 111

Query: 135 HDFFYGDEPKFINAVLDKVS 154
             F       F+N VL K++
Sbjct: 112 KRFGGDASGSFVNGVLGKIA 131


>gi|195941845|ref|ZP_03087227.1| transcription antitermination protein NusB [Borrelia burgdorferi
           80a]
 gi|225549246|ref|ZP_03770219.1| transcription antitermination factor NusB [Borrelia burgdorferi
           94a]
 gi|225370104|gb|EEG99544.1| transcription antitermination factor NusB [Borrelia burgdorferi
           94a]
          Length = 142

 Score =  126 bits (317), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 40/143 (27%), Positives = 67/143 (46%), Gaps = 9/143 (6%)

Query: 17  GIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGV 76
              R+ A Q +Y IDI   +  +I   +       D +LD+E+  +     ++  ++ G 
Sbjct: 2   HEVRVLAFQKIYSIDINQSAMDDIFDIFN----IEDKDLDIENESIK---SFYSSLVIGT 54

Query: 77  MDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECH-SVPVEVIISEYVCIAH 135
            +  +HID LI   ++  WS  R+D +  +ILR GV  L   +       II E + IA 
Sbjct: 55  FNNLEHIDSLIRD-ISLNWSLERMDKVDLAILRMGVYSLKFQNFENSKRAIIDEAILIAK 113

Query: 136 DFFYGDEPKFINAVLDKVSRKEE 158
            +   +  KFIN +LD + +  E
Sbjct: 114 KYGSKNSYKFINGILDALLKNME 136


>gi|216264330|ref|ZP_03436322.1| transcription antitermination factor NusB [Borrelia burgdorferi
           156a]
 gi|221217510|ref|ZP_03588981.1| transcription antitermination factor NusB [Borrelia burgdorferi
           72a]
 gi|223889204|ref|ZP_03623793.1| transcription antitermination factor NusB [Borrelia burgdorferi
           64b]
 gi|225549846|ref|ZP_03770808.1| transcription antitermination factor NusB [Borrelia burgdorferi
           118a]
 gi|215980803|gb|EEC21610.1| transcription antitermination factor NusB [Borrelia burgdorferi
           156a]
 gi|221192788|gb|EEE19004.1| transcription antitermination factor NusB [Borrelia burgdorferi
           72a]
 gi|223885453|gb|EEF56554.1| transcription antitermination factor NusB [Borrelia burgdorferi
           64b]
 gi|225369537|gb|EEG98988.1| transcription antitermination factor NusB [Borrelia burgdorferi
           118a]
          Length = 145

 Score =  126 bits (317), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 40/143 (27%), Positives = 67/143 (46%), Gaps = 9/143 (6%)

Query: 17  GIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGV 76
              R+ A Q +Y IDI   +  +I   +       D +LD+E+  +     ++  ++ G 
Sbjct: 5   HEVRVLAFQKIYSIDINQSAMDDIFDIFN----IEDKDLDIENESIK---SFYSSLVIGT 57

Query: 77  MDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECH-SVPVEVIISEYVCIAH 135
            +  +HID LI   ++  WS  R+D +  +ILR GV  L   +       II E + IA 
Sbjct: 58  FNNLEHIDSLIRD-ISLNWSLERMDKVDLAILRMGVYSLKFQNFENSKRAIIDEAILIAK 116

Query: 136 DFFYGDEPKFINAVLDKVSRKEE 158
            +   +  KFIN +LD + +  E
Sbjct: 117 KYGSKNSYKFINGILDALLKNME 139


>gi|160947152|ref|ZP_02094319.1| hypothetical protein PEPMIC_01084 [Parvimonas micra ATCC 33270]
 gi|158446286|gb|EDP23281.1| hypothetical protein PEPMIC_01084 [Parvimonas micra ATCC 33270]
          Length = 134

 Score =  126 bits (317), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 35/143 (24%), Positives = 64/143 (44%), Gaps = 11/143 (7%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           R  AR   ++ +YQ+ I      + I  +  Y     +E           +++ R     
Sbjct: 3   RSEAREWCMKLIYQLSIHNNFKCDEIESFIEYFDLPSSE-----------VKYIRKNCKS 51

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
           ++D   +ID +I   L   W+++R+  I  +ILR  V E+     +P  V I+E + IA+
Sbjct: 52  IIDNLDNIDNIIKENLEGCWNYNRIAKIDLAILRVAVNEIYYLDDIPESVAINEAIEIAN 111

Query: 136 DFFYGDEPKFINAVLDKVSRKEE 158
            +      KFIN +L  + R ++
Sbjct: 112 KYSTDASYKFINGILGTIVRAKK 134


>gi|224534942|ref|ZP_03675511.1| transcription antitermination factor NusB [Borrelia spielmanii
           A14S]
 gi|224513882|gb|EEF84207.1| transcription antitermination factor NusB [Borrelia spielmanii
           A14S]
          Length = 142

 Score =  125 bits (316), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 36/143 (25%), Positives = 63/143 (44%), Gaps = 9/143 (6%)

Query: 17  GIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGV 76
              R+ A Q +Y IDI   +  +I   +       D E +           ++  +++G 
Sbjct: 2   HEVRVLAFQKIYSIDINQSAMDDIFDIFNIEDKGFDIENESIK-------SFYSSLVNGT 54

Query: 77  MDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECH-SVPVEVIISEYVCIAH 135
            +  +HID LI   ++  WS  R+D +  +ILR GV  L   +       +I + + IA 
Sbjct: 55  FNNLEHIDSLI-RNISWNWSLDRMDKVDLAILRMGVYSLKFQNFENSKRAVIDDAILIAK 113

Query: 136 DFFYGDEPKFINAVLDKVSRKEE 158
            +   +  KFIN +LD + +  E
Sbjct: 114 KYGSKNSYKFINGILDALLKNME 136


>gi|86741891|ref|YP_482291.1| NusB antitermination factor [Frankia sp. CcI3]
 gi|119390771|sp|Q2J830|NUSB_FRASC RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|86568753|gb|ABD12562.1| NusB antitermination factor [Frankia sp. CcI3]
          Length = 135

 Score =  125 bits (316), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 28/88 (31%), Positives = 45/88 (51%), Gaps = 1/88 (1%)

Query: 67  EWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVI 126
           E+   ++ GV++R+  ID  I+    E W+  R+  +  +ILR  VLEL+    VP  V 
Sbjct: 23  EYAVELVEGVVERRGEIDERIARY-AEGWTLERMPPVDRNILRIAVLELLWRPDVPDRVA 81

Query: 127 ISEYVCIAHDFFYGDEPKFINAVLDKVS 154
           I E V +A +      P F+N +L  + 
Sbjct: 82  IDEAVELAKNLSTHRSPAFVNGLLASLV 109


>gi|331091280|ref|ZP_08340121.1| transcription antitermination factor NusB [Lachnospiraceae
           bacterium 2_1_46FAA]
 gi|330404727|gb|EGG84266.1| transcription antitermination factor NusB [Lachnospiraceae
           bacterium 2_1_46FAA]
          Length = 132

 Score =  125 bits (316), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 37/139 (26%), Positives = 61/139 (43%), Gaps = 10/139 (7%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           R   R    + L+ I+  G    E+  + E Y       LD        D  +       
Sbjct: 3   RTELRQHIFKILFLIEFNGRD--EMSEQIELY-------LDNLEELSEKDRAYIENKYRS 53

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
           V+++ + ID L+++  T  W  +R++ +  +ILR    EL     VPV V I+E V +A 
Sbjct: 54  VVEKVEEIDELLNANAT-GWKTARMNKVDLTILRLATYELKWDEDVPVGVAINEAVELAK 112

Query: 136 DFFYGDEPKFINAVLDKVS 154
            +   + P F+N VL K+ 
Sbjct: 113 KYSSEEGPSFVNGVLGKLV 131


>gi|281357054|ref|ZP_06243544.1| NusB antitermination factor [Victivallis vadensis ATCC BAA-548]
 gi|281316612|gb|EFB00636.1| NusB antitermination factor [Victivallis vadensis ATCC BAA-548]
          Length = 170

 Score =  125 bits (316), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 41/158 (25%), Positives = 73/158 (46%), Gaps = 5/158 (3%)

Query: 5   DNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHV 64
           +++   K   +R + R  A+Q L++ D+         +  + +    +     E+     
Sbjct: 7   NDQAGFKPHAKR-LGRELAMQYLFRCDMRDE-LPSAATFGQFFEEVREQHALQENRLARK 64

Query: 65  DLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVE 124
             E+ + + + V   K+ ID  I +  +E W + RL ++  +I+R  V E++    VP  
Sbjct: 65  GREYAQQLYNNVAVHKEEIDATIQAR-SENWEWDRLSVVDRNIMRIAVAEMLYEEEVPPV 123

Query: 125 VIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRS 162
           V I E V IA D+       FIN VL+ V  K+ +KRS
Sbjct: 124 VSIDEAVEIARDYSGEAAGNFINGVLNGV--KDTLKRS 159


>gi|295111308|emb|CBL28058.1| transcription antitermination factor NusB [Synergistetes bacterium
           SGP1]
          Length = 180

 Score =  125 bits (316), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 41/148 (27%), Positives = 66/148 (44%), Gaps = 12/148 (8%)

Query: 21  LAAVQALYQIDII-GCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79
             AVQ LY ++   G    E +  +     CA+ E            E+ R ++ G   R
Sbjct: 32  ELAVQFLYSMECGPGQDLEEALELFLGAESCAEAE-------PPAVKEYCRALVRGTWSR 84

Query: 80  KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139
           +  +D ++ S +T  W   R+  +  ++LR  V E     ++P +  ISE V +A  F  
Sbjct: 85  RTEVDEVLLSVVT-NWRPERMVAVDRAVLRLAVFEGFLDCALPFKSAISEAVNLARSFGT 143

Query: 140 GDEPKFINAVLDKVSRK---EEIKRSGC 164
            D  +F+N VL +V R+   EE K  G 
Sbjct: 144 EDSARFVNGVLARVVRRLIPEERKEGGA 171


>gi|218249233|ref|YP_002374635.1| transcription antitermination factor NusB [Borrelia burgdorferi
           ZS7]
 gi|226321982|ref|ZP_03797507.1| transcription antitermination factor NusB [Borrelia burgdorferi
           Bol26]
 gi|218164421|gb|ACK74482.1| transcription antitermination factor NusB [Borrelia burgdorferi
           ZS7]
 gi|226232572|gb|EEH31326.1| transcription antitermination factor NusB [Borrelia burgdorferi
           Bol26]
 gi|312148021|gb|ADQ30680.1| transcription antitermination factor NusB [Borrelia burgdorferi
           JD1]
          Length = 142

 Score =  125 bits (316), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 40/143 (27%), Positives = 67/143 (46%), Gaps = 9/143 (6%)

Query: 17  GIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGV 76
              R+ A Q +Y IDI   +  +I   +       D +LD+E+  +     ++  ++ G 
Sbjct: 2   HEVRVLAFQKIYSIDINQSAMDDIFDIFN----IEDKDLDIENESIK---SFYSSLVIGT 54

Query: 77  MDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECH-SVPVEVIISEYVCIAH 135
            +  +HID LI   ++  WS  R+D +  +ILR GV  L   +       II E + IA 
Sbjct: 55  FNNLEHIDSLIRD-ISLNWSLERMDKVDLAILRMGVYSLKFENFENSKRAIIDEAILIAK 113

Query: 136 DFFYGDEPKFINAVLDKVSRKEE 158
            +   +  KFIN +LD + +  E
Sbjct: 114 KYGSKNSYKFINGILDALLKNME 136


>gi|317484770|ref|ZP_07943669.1| transcription antitermination factor NusB [Bilophila wadsworthia
           3_1_6]
 gi|316923977|gb|EFV45164.1| transcription antitermination factor NusB [Bilophila wadsworthia
           3_1_6]
          Length = 146

 Score =  125 bits (316), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 30/136 (22%), Positives = 59/136 (43%), Gaps = 3/136 (2%)

Query: 26  ALYQIDIIG-CSTTEIISEYETYRFCADTELDVESVYLHVDLEWFR-VIIHGVMDRKQHI 83
            LY +      +  ++ + +       D ++D  +      L  F   ++ GV    +++
Sbjct: 1   MLYSLQFSPSTTLGDVRTAFLEMPDPTDADMDENAETREEKLYGFAWELVEGVWSNVKNL 60

Query: 84  DLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEP 143
           D +I    ++ W   RL  I  ++LR  V E++    VP +V I+E + ++  F      
Sbjct: 61  DSVIERF-SQNWRVDRLGKIELTLLRLAVFEMLYRADVPPKVAINEALELSTRFGDAKAK 119

Query: 144 KFINAVLDKVSRKEEI 159
            FIN +LD   + +E 
Sbjct: 120 SFINGILDAAIKAQEA 135


>gi|225551926|ref|ZP_03772866.1| transcription antitermination factor NusB [Borrelia sp. SV1]
 gi|225370924|gb|EEH00354.1| transcription antitermination factor NusB [Borrelia sp. SV1]
          Length = 145

 Score =  125 bits (316), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 39/143 (27%), Positives = 66/143 (46%), Gaps = 9/143 (6%)

Query: 17  GIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGV 76
              R+ A Q +Y IDI   +  +I   +       D  LD+E+  +     ++  ++ G 
Sbjct: 5   HEVRVLAFQKIYSIDINQSAMDDIFDIFN----IEDKGLDIENESIK---SFYSSLVIGT 57

Query: 77  MDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECH-SVPVEVIISEYVCIAH 135
            +  +HID LI   ++  WS  R+D +  +ILR GV  L   +       +I E + IA 
Sbjct: 58  FNNLEHIDSLIRD-ISLNWSLERMDKVDLAILRMGVYSLKFQNFENSKRAVIDEAILIAK 116

Query: 136 DFFYGDEPKFINAVLDKVSRKEE 158
            +   +  KFIN +LD + +  E
Sbjct: 117 KYGSKNSYKFINGILDALLKNME 139


>gi|288574984|ref|ZP_06393341.1| NusB antitermination factor [Dethiosulfovibrio peptidovorans DSM
           11002]
 gi|288570725|gb|EFC92282.1| NusB antitermination factor [Dethiosulfovibrio peptidovorans DSM
           11002]
          Length = 143

 Score =  125 bits (315), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 40/142 (28%), Positives = 65/142 (45%), Gaps = 13/142 (9%)

Query: 14  HRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVII 73
           +++  AR  A+Q LY +D+         +E     F  + E+DVE+          R ++
Sbjct: 8   YKKHRAREVALQLLYSMDVTKKHD----AEKALNDFSFEDEIDVETGV--------RALV 55

Query: 74  HGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCI 133
            GVMD    ID LI+  +   W   R+  +  + +R  V E +    VPV V ISE V +
Sbjct: 56  LGVMDHLGEIDNLINVNVV-GWRGDRMVAVDRAAIRLAVYEGLIARVVPVPVAISEAVEL 114

Query: 134 AHDFFYGDEPKFINAVLDKVSR 155
              F   +  +F+N  L ++ R
Sbjct: 115 VKVFGTDESGRFVNGALARIVR 136


>gi|294786532|ref|ZP_06751786.1| transcription antitermination factor NusB [Parascardovia
           denticolens F0305]
 gi|315226110|ref|ZP_07867898.1| transcription antitermination factor NusB [Parascardovia
           denticolens DSM 10105]
 gi|294485365|gb|EFG32999.1| transcription antitermination factor NusB [Parascardovia
           denticolens F0305]
 gi|315120242|gb|EFT83374.1| transcription antitermination factor NusB [Parascardovia
           denticolens DSM 10105]
          Length = 209

 Score =  125 bits (315), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 32/147 (21%), Positives = 61/147 (41%), Gaps = 12/147 (8%)

Query: 12  LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71
           ++  R  AR  A+  LY+ D  G    +++ E   Y                    + + 
Sbjct: 1   MARARTTARKRALNTLYEADEKGEEIVDLLDERLAYPGAQTPLP-----------PYAQE 49

Query: 72  IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
           I+ GV   ++ +D  +    +E W   R+ ++  +I R    E+I    VP +V I E +
Sbjct: 50  IVRGVASHRRTVDKALEEH-SEGWDVKRMHVLDRNIARMAAWEIIYNDDVPAKVAIDEAL 108

Query: 132 CIAHDFFYGDEPKFINAVLDKVSRKEE 158
            +A  +   + P F++ +L  + R  E
Sbjct: 109 TLAKAYSDDEAPHFLHGLLSAIERDAE 135


>gi|312149672|gb|ADQ29743.1| transcription antitermination factor NusB [Borrelia burgdorferi
           N40]
          Length = 142

 Score =  125 bits (315), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 40/143 (27%), Positives = 67/143 (46%), Gaps = 9/143 (6%)

Query: 17  GIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGV 76
              R+ A Q +Y IDI   +  +I   +       D +LD+E+  +     ++  ++ G 
Sbjct: 2   HEVRVLAFQKIYSIDINQSAMDDIFDIFN----IEDKDLDIENESIK---SFYSSLVIGT 54

Query: 77  MDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECH-SVPVEVIISEYVCIAH 135
            +  +HID LI   ++  WS  R+D +  +ILR GV  L   +       II E + IA 
Sbjct: 55  FNNLEHIDSLIRD-ISLNWSLERMDKVDLAILRMGVYSLKFQNFENSKRAIIDEAILIAK 113

Query: 136 DFFYGDEPKFINAVLDKVSRKEE 158
            +   +  KFIN +LD + +  E
Sbjct: 114 KYGSKNSYKFINGILDALLKNME 136


>gi|291536362|emb|CBL09474.1| transcription antitermination factor NusB [Roseburia intestinalis
           M50/1]
 gi|291538768|emb|CBL11879.1| transcription antitermination factor NusB [Roseburia intestinalis
           XB6B4]
          Length = 137

 Score =  125 bits (315), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 28/139 (20%), Positives = 57/139 (41%), Gaps = 10/139 (7%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           R   R    + L++++             E          D    +   D  +    +  
Sbjct: 9   RREIREQVFKMLFRVEFYNQ---------EEMSEQIALCEDDACSWKEKDKTYIFEKVEK 59

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
           + ++ + ID  I+  ++E W   R+  +  +++R  V E++    VP +V I+E V +A 
Sbjct: 60  ISEKLEEIDAKINE-VSEGWKTGRMGKVDLTLIRLAVYEMLYEEDVPAKVAINEAVELAK 118

Query: 136 DFFYGDEPKFINAVLDKVS 154
            +   + P F+N VL K+ 
Sbjct: 119 QYGTDNSPSFVNGVLAKLV 137


>gi|213966115|ref|ZP_03394302.1| transcription antitermination protein NusB [Corynebacterium
           amycolatum SK46]
 gi|213951213|gb|EEB62608.1| transcription antitermination protein NusB [Corynebacterium
           amycolatum SK46]
          Length = 234

 Score =  125 bits (315), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 37/132 (28%), Positives = 59/132 (44%), Gaps = 7/132 (5%)

Query: 24  VQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHI 83
           V  L++ +  G    +++ E        D +++  +       E+   I+ GV      I
Sbjct: 39  VDLLFEAEQRGVDVVKLLEERLEMVRNPDLDVNPIA-------EYTEQIVRGVAAEIIGI 91

Query: 84  DLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEP 143
           D  ISS LTE+W   RL  +  +ILR    EL     VP  V + E V +A ++      
Sbjct: 92  DSTISSYLTEEWPLRRLPAVDRAILRLSTWELFYNSDVPPRVAVVEGVELASEYSTDVAA 151

Query: 144 KFINAVLDKVSR 155
            +INAVLD  ++
Sbjct: 152 PYINAVLDAEAK 163


>gi|224534018|ref|ZP_03674602.1| transcription antitermination factor NusB [Borrelia burgdorferi
           CA-11.2a]
 gi|224512854|gb|EEF83221.1| transcription antitermination factor NusB [Borrelia burgdorferi
           CA-11.2a]
          Length = 145

 Score =  125 bits (315), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 40/143 (27%), Positives = 67/143 (46%), Gaps = 9/143 (6%)

Query: 17  GIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGV 76
              R+ A Q +Y IDI   +  +I   +       D +LD+E+  +     ++  ++ G 
Sbjct: 5   HEVRVLAFQKIYSIDINQSAMDDIFDIFN----IEDKDLDIENESIK---SFYSSLVIGT 57

Query: 77  MDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECH-SVPVEVIISEYVCIAH 135
            +  +HID LI   ++  WS  R+D +  +ILR GV  L   +       II E + IA 
Sbjct: 58  FNNLEHIDSLIRD-ISLNWSLERMDKVDLAILRMGVYSLKFENFENSKRAIIDEAILIAK 116

Query: 136 DFFYGDEPKFINAVLDKVSRKEE 158
            +   +  KFIN +LD + +  E
Sbjct: 117 KYGSKNSYKFINGILDALLKNME 139


>gi|303228824|ref|ZP_07315638.1| transcription antitermination factor NusB [Veillonella atypica
           ACS-134-V-Col7a]
 gi|303232103|ref|ZP_07318806.1| transcription antitermination factor NusB [Veillonella atypica
           ACS-049-V-Sch6]
 gi|302513209|gb|EFL55248.1| transcription antitermination factor NusB [Veillonella atypica
           ACS-049-V-Sch6]
 gi|302516536|gb|EFL58464.1| transcription antitermination factor NusB [Veillonella atypica
           ACS-134-V-Col7a]
          Length = 134

 Score =  125 bits (315), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 36/149 (24%), Positives = 61/149 (40%), Gaps = 16/149 (10%)

Query: 10  LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF 69
           +     R  AR  A Q LY  +               +    D       + L +D+ + 
Sbjct: 1   MSKKRNRREARQYAFQVLYANEF--------------HTSNDDVIFPDGEISLSMDIAYA 46

Query: 70  RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIEC-HSVPVEVIIS 128
             II GV+   + ID ++    T++  F  +D +  +ILR  + EL      V   ++I+
Sbjct: 47  NQIIDGVLSHLEEIDTILEPYCTKR-KFVLMDKVDRAILRLAIWELNYNSEEVSPSIVIN 105

Query: 129 EYVCIAHDFFYGDEPKFINAVLDKVSRKE 157
           E V +A  F      K INA+LD  ++ +
Sbjct: 106 EAVQLAKSFGSDASYKLINAILDAYNKSK 134


>gi|309389162|gb|ADO77042.1| NusB antitermination factor [Halanaerobium praevalens DSM 2228]
          Length = 133

 Score =  125 bits (315), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 37/139 (26%), Positives = 57/139 (41%), Gaps = 11/139 (7%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           R   R+ A+Q LY +DI      E       +   +      E   L  DL +   I+ G
Sbjct: 6   RHKQRIWALQILYGLDIRKKLALE-------HSKKSYENFMAEKGVLSEDL-YVAEILEG 57

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
           ++   + +D  I       W   R+  I  +ILR    E+     +P +V I+E V IA 
Sbjct: 58  IILELELLDAQIDQY-AINWDIERMPAIDRNILRIAAYEIQH--DIPAKVAINEAVKIAK 114

Query: 136 DFFYGDEPKFINAVLDKVS 154
            +     P FIN +L K +
Sbjct: 115 KYADDSSPSFINGILSKFA 133


>gi|300172801|ref|YP_003771966.1| N utilization substance protein B [Leuconostoc gasicomitatum LMG
           18811]
 gi|299887179|emb|CBL91147.1| N utilization substance protein B homolog [Leuconostoc
           gasicomitatum LMG 18811]
          Length = 138

 Score =  125 bits (315), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 32/135 (23%), Positives = 60/135 (44%), Gaps = 14/135 (10%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           R  +R AA Q L+ ++     +  I   Y+      D +            ++   +++G
Sbjct: 6   RHESRQAAFQVLFALE-KDPKSNNIDKLYDIVLEGKDYD------------DYLPRLVNG 52

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
           V+  K  +D  I++ L   W+ +R++     ILR  + EL+    VP +V I E + +  
Sbjct: 53  VLGTKSELDEQITAHLANGWAINRINKADLIILRLAIYELLNNL-VPYKVAIDEALILTK 111

Query: 136 DFFYGDEPKFINAVL 150
            F   +  KF+N +L
Sbjct: 112 TFSDEESRKFVNGLL 126


>gi|258542345|ref|YP_003187778.1| transcription antitermination factor NusB [Acetobacter pasteurianus
           IFO 3283-01]
 gi|256633423|dbj|BAH99398.1| transcription antitermination factor NusB [Acetobacter pasteurianus
           IFO 3283-01]
 gi|256636482|dbj|BAI02451.1| transcription antitermination factor NusB [Acetobacter pasteurianus
           IFO 3283-03]
 gi|256639535|dbj|BAI05497.1| transcription antitermination factor NusB [Acetobacter pasteurianus
           IFO 3283-07]
 gi|256642591|dbj|BAI08546.1| transcription antitermination factor NusB [Acetobacter pasteurianus
           IFO 3283-22]
 gi|256645646|dbj|BAI11594.1| transcription antitermination factor NusB [Acetobacter pasteurianus
           IFO 3283-26]
 gi|256648699|dbj|BAI14640.1| transcription antitermination factor NusB [Acetobacter pasteurianus
           IFO 3283-32]
 gi|256651752|dbj|BAI17686.1| transcription antitermination factor NusB [Acetobacter pasteurianus
           IFO 3283-01-42C]
 gi|256654743|dbj|BAI20670.1| transcription antitermination factor NusB [Acetobacter pasteurianus
           IFO 3283-12]
          Length = 174

 Score =  125 bits (315), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 55/173 (31%), Positives = 86/173 (49%), Gaps = 4/173 (2%)

Query: 1   MTIQDNKKDLKLSHR-RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELD--V 57
           MT   ++  LK + R R  AR+AAVQAL+QID  G     +I ++  +RF    +     
Sbjct: 1   MTELQDEPRLKGAQRPRTAARVAAVQALFQIDQNGDRPENVIEQFLVHRFGTTLDGASYE 60

Query: 58  ESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIE 117
           +      D + F  I+  V   +  +   +   L E W  +RLD +L ++L A   E  E
Sbjct: 61  DGCIPEADTQLFSHIVRLVTSMRTQVTQEVEKTLPETWPIARLDPVLRALLLAAAAEATE 120

Query: 118 CHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRSGCVSAITQ 170
               P  V+I+EY+ +AH FF GDEP+ +N VLD + ++   +R+       Q
Sbjct: 121 G-DAPAPVLINEYMDVAHAFFSGDEPRLVNGVLDTLFKRLAAERNHDTEQTQQ 172


>gi|255284121|ref|ZP_05348676.1| transcription antitermination factor NusB [Bryantella formatexigens
           DSM 14469]
 gi|255265295|gb|EET58500.1| transcription antitermination factor NusB [Bryantella formatexigens
           DSM 14469]
          Length = 134

 Score =  125 bits (315), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 33/140 (23%), Positives = 64/140 (45%), Gaps = 8/140 (5%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           R   R    + L+ ++       E+  + E Y      +   E+     D E+     H 
Sbjct: 3   RREIREHIFKLLFLLEFYQK--EELNEQAELY-----MDEVEEAAPTEKDAEYIFDKFHK 55

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
           + ++   +D  +++  ++ W   R++ +  +ILR    E++E   +PV V I+E V +A 
Sbjct: 56  IEEKLPQLDERLAAE-SQGWKLGRMNKVDLAILRLAAYEVLEDDDIPVGVAINEAVELAK 114

Query: 136 DFFYGDEPKFINAVLDKVSR 155
            +   D P F+N VL K++R
Sbjct: 115 KYGGDDSPSFVNGVLGKIAR 134


>gi|224532931|ref|ZP_03673541.1| transcription antitermination factor NusB [Borrelia burgdorferi
           WI91-23]
 gi|224512130|gb|EEF82521.1| transcription antitermination factor NusB [Borrelia burgdorferi
           WI91-23]
          Length = 145

 Score =  125 bits (315), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 40/143 (27%), Positives = 67/143 (46%), Gaps = 9/143 (6%)

Query: 17  GIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGV 76
              R+ A Q +Y IDI   +  +I   +       D +LD+E+  +     ++  ++ G 
Sbjct: 5   HEVRVLAFQKIYSIDINQSAMDDIFDIFN----IEDKDLDIENESIK---SFYSSLVIGT 57

Query: 77  MDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECH-SVPVEVIISEYVCIAH 135
            +  +HID LI   ++  WS  R+D +  +ILR GV  L   +       II E + IA 
Sbjct: 58  FNNLEHIDSLIRD-ISLNWSLERMDKVDLAILRMGVYSLKFQNFENSKRAIIDEAILIAK 116

Query: 136 DFFYGDEPKFINAVLDKVSRKEE 158
            +   +  KFIN +LD + +  E
Sbjct: 117 KYGSKNSYKFINGILDALLKNME 139


>gi|15594453|ref|NP_212241.1| transcription antitermination protein NusB [Borrelia burgdorferi
           B31]
 gi|7387971|sp|O51134|NUSB_BORBU RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|2687995|gb|AAC66498.1| N-utilization substance protein B (nusB) [Borrelia burgdorferi B31]
          Length = 145

 Score =  125 bits (315), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 41/143 (28%), Positives = 67/143 (46%), Gaps = 9/143 (6%)

Query: 17  GIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGV 76
              R+ A Q +Y IDI   +  +I   +       D +LD+E+  +     ++  ++ G 
Sbjct: 5   HEVRVLAFQKIYSIDINQSAMDDIFDIFN----IEDKDLDIENESIK---SFYSSLVIGT 57

Query: 77  MDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECH-SVPVEVIISEYVCIAH 135
            D  +HID LI   ++  WS  R+D +  +ILR GV  L   +       II E + IA 
Sbjct: 58  FDNLEHIDSLIRD-ISLNWSLERMDKVDLAILRMGVYSLKFQNFENSKRAIIDEAILIAK 116

Query: 136 DFFYGDEPKFINAVLDKVSRKEE 158
            +   +  KFIN +LD + +  E
Sbjct: 117 KYGSKNSYKFINGILDALLKNME 139


>gi|116625277|ref|YP_827433.1| NusB antitermination factor [Candidatus Solibacter usitatus
           Ellin6076]
 gi|122252386|sp|Q01T72|NUSB_SOLUE RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|116228439|gb|ABJ87148.1| NusB antitermination factor [Candidatus Solibacter usitatus
           Ellin6076]
          Length = 146

 Score =  125 bits (315), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 29/133 (21%), Positives = 52/133 (39%), Gaps = 11/133 (8%)

Query: 24  VQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHI 83
           +Q L+  D       + I+ Y    +  +               +   ++ G ++    +
Sbjct: 12  LQILFIWDARKQPVEDAINAYYDTLYSDEKPERD---------PFVIDLVRGTVEHLAEV 62

Query: 84  DLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEP 143
           D  I+    E W   R+  +  +ILR  V E+      P  V I E + +A  F   +  
Sbjct: 63  DDRITRH-AEHWRMERMPAVDRNILRLAVYEMT-RGGTPAPVTIDEALELARKFSNEESV 120

Query: 144 KFINAVLDKVSRK 156
           +F+N VLD V R+
Sbjct: 121 QFVNGVLDAVRRE 133


>gi|325265401|ref|ZP_08132125.1| transcription antitermination factor NusB [Clostridium sp. D5]
 gi|324029402|gb|EGB90693.1| transcription antitermination factor NusB [Clostridium sp. D5]
          Length = 132

 Score =  125 bits (314), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 34/138 (24%), Positives = 57/138 (41%), Gaps = 10/138 (7%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           R   R    + L+QI+       E + E+    F      +  S     D E+       
Sbjct: 3   RRELREHIFKMLFQIEFNEM---EDMPEHLALYF------ENLSSATEEDKEYITKKFEA 53

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
           ++ +   ID +++   T  W  +R+  +  +ILR    E+     VP  V I+E V +A 
Sbjct: 54  IVKKVPEIDAILNEK-TTGWKTTRMSKVDLTILRLATYEMKWDEDVPEGVAINEAVELAK 112

Query: 136 DFFYGDEPKFINAVLDKV 153
            F   + P F+N VL K+
Sbjct: 113 RFSGEEGPSFVNGVLAKL 130


>gi|210615789|ref|ZP_03290770.1| hypothetical protein CLONEX_02988 [Clostridium nexile DSM 1787]
 gi|210150125|gb|EEA81134.1| hypothetical protein CLONEX_02988 [Clostridium nexile DSM 1787]
          Length = 132

 Score =  125 bits (314), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 39/140 (27%), Positives = 64/140 (45%), Gaps = 10/140 (7%)

Query: 15  RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74
            R   R    + L++I+     + E + E E   F    E D +      D  +      
Sbjct: 2   NRSELREHIFRMLFRIEFN---SEEEMKEQEDLYFELLGETDEQ------DKTYILNKYK 52

Query: 75  GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134
            V+D+K+ ID L++   T  W  SR++ +  +ILR  V E+     VP  V I+E V +A
Sbjct: 53  AVVDKKEEIDGLLNEY-TTGWKTSRMNRVDLTILRLAVYEMKWDEEVPTGVAINEAVELA 111

Query: 135 HDFFYGDEPKFINAVLDKVS 154
             +   + P F+N VL K++
Sbjct: 112 KKYSSDEGPSFVNGVLAKLA 131


>gi|326692420|ref|ZP_08229425.1| N utilization substance protein B [Leuconostoc argentinum KCTC
           3773]
          Length = 138

 Score =  125 bits (314), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 37/145 (25%), Positives = 66/145 (45%), Gaps = 14/145 (9%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           R  +R AA Q L+ ++    ++  I S YE      D +            ++   +++G
Sbjct: 6   RHESRQAAFQVLFALE-KDPTSNSIDSLYEIVLDGKDYD------------DYLPRLVNG 52

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
           V+  K  +D  I++ L   W+ +R++     ILR  + EL     VP +V I E + +A 
Sbjct: 53  VLGSKADLDAHITAHLATGWAINRINKADLVILRLAIYELNNQL-VPYKVAIDEALILAK 111

Query: 136 DFFYGDEPKFINAVLDKVSRKEEIK 160
            F   D+ KF+N +L   +  +  K
Sbjct: 112 TFADEDDRKFVNGLLKHFAPTDTPK 136


>gi|329113506|ref|ZP_08242287.1| N utilization substance protein B-like protein [Acetobacter pomorum
           DM001]
 gi|326697331|gb|EGE48991.1| N utilization substance protein B-like protein [Acetobacter pomorum
           DM001]
          Length = 174

 Score =  125 bits (314), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 55/173 (31%), Positives = 86/173 (49%), Gaps = 4/173 (2%)

Query: 1   MTIQDNKKDLKLSHR-RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELD--V 57
           MT   ++  LK + R R  AR+AAVQAL+QID  G     +I ++  +RF    +     
Sbjct: 1   MTELQDEPRLKGAQRPRTAARVAAVQALFQIDQNGDRPENVIEQFLVHRFGTTLDGASYE 60

Query: 58  ESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIE 117
           +      D + F  I+  V   +  +   +   L E W  +RLD +L ++L A   E  E
Sbjct: 61  DGCIPEADTQLFSHIVRLVTSLRTQVTQEVEKTLPETWPIARLDPVLRALLLAAAAEATE 120

Query: 118 CHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRSGCVSAITQ 170
               P  V+I+EY+ +AH FF GDEP+ +N VLD + ++   +R+       Q
Sbjct: 121 G-DAPAPVLINEYMDVAHAFFSGDEPRLVNGVLDTLFKRLAAERNHDTEQTQQ 172


>gi|152966952|ref|YP_001362736.1| NusB antitermination factor [Kineococcus radiotolerans SRS30216]
 gi|189035892|sp|A6WCD3|NUSB_KINRD RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|151361469|gb|ABS04472.1| NusB antitermination factor [Kineococcus radiotolerans SRS30216]
          Length = 136

 Score =  125 bits (314), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 30/135 (22%), Positives = 63/135 (46%), Gaps = 14/135 (10%)

Query: 24  VQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHI 83
           ++ L++ D  G +  +++              D          E+   ++ GV++ +  I
Sbjct: 12  LEVLFEADQRGLAPLDVLK-------------DKILRADPPVGEYAVTVVEGVVEHQARI 58

Query: 84  DLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEP 143
           D ++S+  +  W   R+  +  ++LR G  E++    VP  V +SE V IA +    + P
Sbjct: 59  DEVLSTY-SMAWPLDRMPAVDRALLRIGTWEVLYAADVPDHVAVSEAVEIAQELSTDESP 117

Query: 144 KFINAVLDKVSRKEE 158
           KF+N +L +++  +E
Sbjct: 118 KFVNGLLARIAELKE 132


>gi|183221521|ref|YP_001839517.1| transcription antitermination protein NusB [Leptospira biflexa
           serovar Patoc strain 'Patoc 1 (Paris)']
 gi|189911605|ref|YP_001963160.1| transcription antitermination protein NusB [Leptospira biflexa
           serovar Patoc strain 'Patoc 1 (Ames)']
 gi|238687781|sp|B0SB76|NUSB_LEPBA RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|238687828|sp|B0ST01|NUSB_LEPBP RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|167776281|gb|ABZ94582.1| Transcription antitermination protein [Leptospira biflexa serovar
           Patoc strain 'Patoc 1 (Ames)']
 gi|167779943|gb|ABZ98241.1| N utilization substance protein B-like protein (Protein NusB); L
           factor [Leptospira biflexa serovar Patoc strain 'Patoc 1
           (Paris)']
          Length = 140

 Score =  124 bits (313), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 38/144 (26%), Positives = 65/144 (45%), Gaps = 12/144 (8%)

Query: 14  HRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVII 73
             R   R  A+  LYQID++G      +      +     E D           +   ++
Sbjct: 2   SSRHRGRSLALMCLYQIDLVGTDPDRAMKFDWYDKKITREEKD-----------YAVFLV 50

Query: 74  HGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCI 133
            GV++ ++ ID LI    +E W  SR+ ++   ILR  +L L +   +   V+I+E V +
Sbjct: 51  KGVVENRKAIDTLIKKY-SENWELSRISVVNRCILRLSILSLQKEPFLAAPVVINEAVEL 109

Query: 134 AHDFFYGDEPKFINAVLDKVSRKE 157
             +F   +  +FIN +LD   +KE
Sbjct: 110 TKEFETEESAQFINGLLDAFYKKE 133


>gi|257413800|ref|ZP_04744265.2| transcription antitermination factor NusB [Roseburia intestinalis
           L1-82]
 gi|257202253|gb|EEV00538.1| transcription antitermination factor NusB [Roseburia intestinalis
           L1-82]
          Length = 146

 Score =  124 bits (313), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 30/152 (19%), Positives = 63/152 (41%), Gaps = 10/152 (6%)

Query: 3   IQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYL 62
           IQ+ +   + +  R   R    + L++++             E          D    + 
Sbjct: 5   IQEERMTEEKNMTRREIREQVFKMLFRVEFYNQ---------EEMSEQIALCEDDACNWK 55

Query: 63  HVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVP 122
             D  +    +  + ++ + ID  I+  ++E W   R+  +  +++R  V E++    VP
Sbjct: 56  EKDKTYIFEKVEKISEKLEEIDAKINE-VSEGWKTGRMGKVDLTLIRLAVYEMLYEEDVP 114

Query: 123 VEVIISEYVCIAHDFFYGDEPKFINAVLDKVS 154
            +V I+E V +A  +   + P F+N VL K+ 
Sbjct: 115 AKVAINEAVELAKQYGTDNSPSFVNGVLAKLV 146


>gi|261417120|ref|YP_003250803.1| NusB antitermination factor [Fibrobacter succinogenes subsp.
           succinogenes S85]
 gi|261373576|gb|ACX76321.1| NusB antitermination factor [Fibrobacter succinogenes subsp.
           succinogenes S85]
 gi|302325378|gb|ADL24579.1| N utilization substance protein B [Fibrobacter succinogenes subsp.
           succinogenes S85]
          Length = 146

 Score =  124 bits (313), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 32/140 (22%), Positives = 62/140 (44%), Gaps = 12/140 (8%)

Query: 17  GIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGV 76
             AR+ A+Q LY ++I G +  + +      +   D              ++   ++  V
Sbjct: 7   RPARVFAMQLLYAMEISGGTVADALPGVLEAQPLQDNM-----------KKYGMKLVDLV 55

Query: 77  MDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHD 136
           +  K  +D  I +C +  W   R+  +   +LR  ++EL+    +P++V+ISE V +A  
Sbjct: 56  LAHKAELDSEIEAC-SAHWGIERMATLDRIVLRIAMVELLYVPEIPMKVVISEAVQVAAK 114

Query: 137 FFYGDEPKFINAVLDKVSRK 156
           F       F+N +L    +K
Sbjct: 115 FSTDSSGTFVNGLLAGFLQK 134


>gi|295108281|emb|CBL22234.1| transcription antitermination factor NusB [Ruminococcus obeum
           A2-162]
          Length = 171

 Score =  124 bits (313), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 33/140 (23%), Positives = 60/140 (42%), Gaps = 10/140 (7%)

Query: 15  RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74
           RR   R    + L+   +   +T   + E  +  F    E+         D E  +    
Sbjct: 2   RRSEQREHIFKLLF---MTQFNTENEMPEQLSIYFEGLGEV------SEKDQEAIQQKYD 52

Query: 75  GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134
            +++  + ID +++   +  W  +R++ +  + LR  V E+     VPV V I+E V +A
Sbjct: 53  HILEHLEEIDEILNDY-SRGWKTTRMNRVDLTALRLAVYEMKMDEDVPVGVAINEAVELA 111

Query: 135 HDFFYGDEPKFINAVLDKVS 154
             F   D   F+N VL K++
Sbjct: 112 KLFGGEDSGSFVNGVLGKIA 131


>gi|268680366|ref|YP_003304797.1| transcription antitermination factor NusB [Sulfurospirillum
           deleyianum DSM 6946]
 gi|268618397|gb|ACZ12762.1| transcription antitermination factor NusB [Sulfurospirillum
           deleyianum DSM 6946]
          Length = 136

 Score =  124 bits (313), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 39/145 (26%), Positives = 62/145 (42%), Gaps = 13/145 (8%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           R  AR + +  LY  DI      + I E    +   + +            E+   +  G
Sbjct: 4   RHQARESIITLLYAEDIGNAGIDKFIDELFEEKKIRNQQ-----------KEFALGLYQG 52

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
           V      ID  I+  L E W+ S + M+  +ILR G  E++    +   V+I+E + +A 
Sbjct: 53  VKAHLSVIDEAINRHLKE-WNLSEIGMLERAILRLGGYEILYS-ELDNAVVINEAIELAK 110

Query: 136 DFFYGDEPKFINAVLDKVSRKEEIK 160
                  PKFIN VLD + ++ E K
Sbjct: 111 KLCNETSPKFINGVLDAICKEGEAK 135


>gi|111224614|ref|YP_715408.1| antitermination factor NusB [Frankia alni ACN14a]
 gi|111152146|emb|CAJ63876.1| Antitermination factor NusB [Frankia alni ACN14a]
          Length = 124

 Score =  124 bits (313), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 26/86 (30%), Positives = 44/86 (51%), Gaps = 1/86 (1%)

Query: 67  EWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVI 126
           E+   ++ GV++  + I+  I     E W+  R+  +  +ILR  VLEL+    VP  V+
Sbjct: 23  EYAEGLVRGVVEHWREINERIGRH-AEGWTLERMPPVDRNILRIAVLELLWRPDVPPRVV 81

Query: 127 ISEYVCIAHDFFYGDEPKFINAVLDK 152
           I E V +A +      P F+N ++D 
Sbjct: 82  IDEAVELAKNLSTDRSPSFVNGLVDA 107


>gi|158313539|ref|YP_001506047.1| NusB antitermination factor [Frankia sp. EAN1pec]
 gi|158108944|gb|ABW11141.1| NusB antitermination factor [Frankia sp. EAN1pec]
          Length = 135

 Score =  124 bits (313), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 25/96 (26%), Positives = 45/96 (46%), Gaps = 1/96 (1%)

Query: 67  EWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVI 126
           ++   ++ GV+     ID  I+    + W+  R+  +  +ILR  VLEL     VP  V+
Sbjct: 23  DYTSDLVEGVVAHLAEIDAHIARF-AQGWTLDRMPPVDRNILRIAVLELFWRSDVPDRVV 81

Query: 127 ISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRS 162
           I E V +A        P F+N +L  + +++ +   
Sbjct: 82  IDEAVRLAKTISTERSPAFVNGLLASLLKEKPVPEG 117


>gi|224417753|ref|ZP_03655759.1| transcription antitermination protein NusB [Helicobacter canadensis
           MIT 98-5491]
 gi|253827096|ref|ZP_04869981.1| transcription antitermination protein NusB [Helicobacter canadensis
           MIT 98-5491]
 gi|313141294|ref|ZP_07803487.1| transcription antitermination factor NusB [Helicobacter canadensis
           MIT 98-5491]
 gi|253510502|gb|EES89161.1| transcription antitermination protein NusB [Helicobacter canadensis
           MIT 98-5491]
 gi|313130325|gb|EFR47942.1| transcription antitermination factor NusB [Helicobacter canadensis
           MIT 98-5491]
          Length = 184

 Score =  124 bits (313), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 37/145 (25%), Positives = 67/145 (46%), Gaps = 13/145 (8%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           R   R   VQ LY       S  + I ++    F        E    +   ++  ++ +G
Sbjct: 4   RSHVREVVVQLLYAY----GSGNDAIFKFADEIFG-------EHKIKNKQKDFANLLFNG 52

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
           V++  + +DL I+  L E W F+++  +  +ILR GV E+    ++   + I+E + +A 
Sbjct: 53  VIENLESLDLRIAHQL-ESWDFTKIGDMEKAILRLGVYEIAFN-NLDKAIAINEALELAK 110

Query: 136 DFFYGDEPKFINAVLDKVSRKEEIK 160
            F      KFIN VLD +++  +I 
Sbjct: 111 TFGNEASAKFINGVLDNIAKNLQIP 135


>gi|256825101|ref|YP_003149061.1| NusB antitermination factor [Kytococcus sedentarius DSM 20547]
 gi|256688494|gb|ACV06296.1| NusB antitermination factor [Kytococcus sedentarius DSM 20547]
          Length = 137

 Score =  124 bits (313), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 34/140 (24%), Positives = 62/140 (44%), Gaps = 12/140 (8%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           R  AR  AV  L++ +    +   +++               E     V  E+   ++ G
Sbjct: 4   RSKARKRAVDLLFEAEQRSLNVEVLMARRRE-----------EPEAQVVVPEFTVTLVEG 52

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
           V+     I+  +SS  ++ WS  R+  +  +ILR G  E++    VP  V ISE V +A 
Sbjct: 53  VVSHWASINDALSSW-SQGWSLERMPAVDRAILRLGTYEIVWAEDVPDAVAISEAVNLAA 111

Query: 136 DFFYGDEPKFINAVLDKVSR 155
                + P F++ +L ++S+
Sbjct: 112 HLSTDESPNFVSGLLTRISQ 131


>gi|291531066|emb|CBK96651.1| transcription antitermination factor NusB [Eubacterium siraeum
           70/3]
          Length = 143

 Score =  124 bits (312), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 35/147 (23%), Positives = 67/147 (45%), Gaps = 14/147 (9%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           R   R AA+  L+Q+ +   +  EI+   E  +   + E + +SV           ++ G
Sbjct: 8   RHEMREAALLILFQMKLNPETLDEIL---EDCKESFEMEYNSQSV----------KLVKG 54

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
           V + +  ++ +I S  +      R+  I  +I+R  + E+  C SVP +V I+E +  A 
Sbjct: 55  VAEHEDELNGIIESY-SPSRKLDRISYINLAIMRIALYEMKYCPSVPDKVAINEAIEFAK 113

Query: 136 DFFYGDEPKFINAVLDKVSRKEEIKRS 162
           ++    + +FIN VL+   +    K  
Sbjct: 114 EYADKTDVRFINGVLNSYYKDNPTKEQ 140


>gi|297623354|ref|YP_003704788.1| NusB antitermination factor [Truepera radiovictrix DSM 17093]
 gi|297164534|gb|ADI14245.1| NusB antitermination factor [Truepera radiovictrix DSM 17093]
          Length = 165

 Score =  124 bits (312), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 37/155 (23%), Positives = 67/155 (43%), Gaps = 4/155 (2%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEI---ISEYETYRFCADTELDVESVYLHVDLEWFRVI 72
           R  AR  A +AL+Q +  G    E+   I +  T +   + E           L +   +
Sbjct: 3   RRRARELAFRALFQSERGGEPLLEVWEGIRDDVTEQPPDEAEEAYGDPLEEEGLAFAERL 62

Query: 73  IHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVC 132
           +      ++ +D  +S  L E W+F+++     ++LR  + E++    VP EV I   V 
Sbjct: 63  LRAFHTHREEVDARLSEAL-EGWTFAQMAQTDLAVLRLALTEILFEPEVPKEVTIEVAVR 121

Query: 133 IAHDFFYGDEPKFINAVLDKVSRKEEIKRSGCVSA 167
           IA  +   +  +F+N VL ++ R+      G   A
Sbjct: 122 IAKRYGGEESGRFVNGVLGRLYREVRGDAPGGEGA 156


>gi|160934296|ref|ZP_02081683.1| hypothetical protein CLOLEP_03167 [Clostridium leptum DSM 753]
 gi|156866969|gb|EDO60341.1| hypothetical protein CLOLEP_03167 [Clostridium leptum DSM 753]
          Length = 134

 Score =  124 bits (312), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 36/144 (25%), Positives = 65/144 (45%), Gaps = 14/144 (9%)

Query: 15  RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74
           +R  AR  A   +++      S  E++   E+ +   D  +            + + + H
Sbjct: 2   KRHEAREQAFFLIFERTFQEASLEELV---ESAQLARDITICG----------FAQNVFH 48

Query: 75  GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134
           GV    + ID +I       W+ +RL  +  S+LR  V E++    +PV V I+E V IA
Sbjct: 49  GVEKHGEEIDGMIEKHCI-GWTKNRLSRVAVSVLRTAVYEMLYEEKIPVSVSINEAVEIA 107

Query: 135 HDFFYGDEPKFINAVLDKVSRKEE 158
             +   ++  F+N VL  V+++ E
Sbjct: 108 KTYGSTEDASFVNGVLGSVAKELE 131


>gi|116492583|ref|YP_804318.1| NusB antitermination factor [Pediococcus pentosaceus ATCC 25745]
 gi|122265953|sp|Q03FZ6|NUSB_PEDPA RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|116102733|gb|ABJ67876.1| NusB antitermination factor [Pediococcus pentosaceus ATCC 25745]
          Length = 133

 Score =  124 bits (312), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 32/144 (22%), Positives = 60/144 (41%), Gaps = 11/144 (7%)

Query: 12  LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71
           +S  R   R +A + ++       +    +SE +            E        ++ + 
Sbjct: 1   MSLNRHQIRESAFKIIFA---KSANPDADLSELQDQVL-------EEFHETEAPDQFLKD 50

Query: 72  IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
           ++ GV    + I+  IS  L + W+  RL+     IL+ G  E+      P +V I+E +
Sbjct: 51  LVMGVSLNLEAINETISGELKKGWTVKRLESPDRVILQMGTYEIKYT-ETPDKVAINEAL 109

Query: 132 CIAHDFFYGDEPKFINAVLDKVSR 155
            +A  +   D  KFIN VL  +++
Sbjct: 110 ELAKKYTDEDARKFINGVLSNIAK 133


>gi|126698797|ref|YP_001087694.1| N utilization substance protein B [Clostridium difficile 630]
 gi|119390758|sp|Q18B61|NUSB_CLOD6 RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|115250234|emb|CAJ68055.1| N utilization substance protein B homolog (Protein NusB)
           [Clostridium difficile]
          Length = 169

 Score =  124 bits (312), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 34/165 (20%), Positives = 66/165 (40%), Gaps = 21/165 (12%)

Query: 11  KLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYET-------------------YRFCA 51
           K   ++   R   ++ +YQI+I       +  + +                    Y    
Sbjct: 4   KDRAQKSTTREYIMKLIYQININKEDFETLEDKVDNFLKDNSEHIINRYKELALQYSKNT 63

Query: 52  DTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAG 111
           + +L+   +   +D ++   +   + +    ID LI+    + W+  R+  +  SILR  
Sbjct: 64  NLKLEDTEIEDVIDKKYINTVCKALKENHDKIDELINKH-AKNWTVDRMPKVDVSILRLS 122

Query: 112 VLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRK 156
           V E++     P +V I+E V +A  +     PKFIN +L  V  +
Sbjct: 123 VCEILY-LDTPNKVSINEAVELAKIYCDDKSPKFINGILGSVVDE 166


>gi|254974736|ref|ZP_05271208.1| N utilization substance protein B [Clostridium difficile QCD-66c26]
 gi|255092125|ref|ZP_05321603.1| N utilization substance protein B [Clostridium difficile CIP
           107932]
 gi|255100216|ref|ZP_05329193.1| N utilization substance protein B [Clostridium difficile QCD-63q42]
 gi|255306105|ref|ZP_05350277.1| N utilization substance protein B [Clostridium difficile ATCC
           43255]
 gi|255313862|ref|ZP_05355445.1| N utilization substance protein B [Clostridium difficile QCD-76w55]
 gi|255516543|ref|ZP_05384219.1| N utilization substance protein B [Clostridium difficile QCD-97b34]
 gi|255649643|ref|ZP_05396545.1| N utilization substance protein B [Clostridium difficile QCD-37x79]
 gi|260682807|ref|YP_003214092.1| N utilization substance protein B [Clostridium difficile CD196]
 gi|260686405|ref|YP_003217538.1| N utilization substance protein B [Clostridium difficile R20291]
 gi|306519760|ref|ZP_07406107.1| N utilization substance protein B [Clostridium difficile QCD-32g58]
 gi|260208970|emb|CBA62018.1| N utilization substance protein B [Clostridium difficile CD196]
 gi|260212421|emb|CBE03285.1| N utilization substance protein B [Clostridium difficile R20291]
          Length = 168

 Score =  124 bits (311), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 34/165 (20%), Positives = 66/165 (40%), Gaps = 21/165 (12%)

Query: 11  KLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYET-------------------YRFCA 51
           K   ++   R   ++ +YQI+I       +  + +                    Y    
Sbjct: 3   KDRAQKSTTREYIMKLIYQININKEDFETLEDKVDNFLKDNSEHIINRYKELALQYSKNT 62

Query: 52  DTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAG 111
           + +L+   +   +D ++   +   + +    ID LI+    + W+  R+  +  SILR  
Sbjct: 63  NLKLEDTEIEDVIDKKYINTVCKALKENHDKIDELINKH-AKNWTVDRMPKVDVSILRLS 121

Query: 112 VLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRK 156
           V E++     P +V I+E V +A  +     PKFIN +L  V  +
Sbjct: 122 VCEILY-LDTPNKVSINEAVELAKIYCDDKSPKFINGILGSVVDE 165


>gi|302670343|ref|YP_003830303.1| transcription antitermination factor NusB [Butyrivibrio
           proteoclasticus B316]
 gi|302394816|gb|ADL33721.1| transcription antitermination factor NusB [Butyrivibrio
           proteoclasticus B316]
          Length = 133

 Score =  124 bits (311), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 36/141 (25%), Positives = 62/141 (43%), Gaps = 9/141 (6%)

Query: 15  RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74
            R   R    Q L++++    S  E++ + E +    D E      +   D ++ R    
Sbjct: 2   NRTELREQIFQLLFRVEFN--SKEEMMEQEELFTTEGDLE------FSKSDADYIRDKYE 53

Query: 75  GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134
            + D+ + ID  I+      W  SR+  +  +I+R  V E+    +VP  V I+E V +A
Sbjct: 54  KIADKLEEIDKAINEKAV-GWETSRMAKVDLTIIRLAVYEIKFDETVPTGVAINEAVELA 112

Query: 135 HDFFYGDEPKFINAVLDKVSR 155
             F     P F+N VL K ++
Sbjct: 113 KKFGQDGSPAFVNGVLAKFAQ 133


>gi|303250733|ref|ZP_07336929.1| transcription antitermination protein NusB [Actinobacillus
           pleuropneumoniae serovar 6 str. Femo]
 gi|303252024|ref|ZP_07338195.1| transcription antitermination protein NusB [Actinobacillus
           pleuropneumoniae serovar 2 str. 4226]
 gi|302649454|gb|EFL79639.1| transcription antitermination protein NusB [Actinobacillus
           pleuropneumoniae serovar 2 str. 4226]
 gi|302650403|gb|EFL80563.1| transcription antitermination protein NusB [Actinobacillus
           pleuropneumoniae serovar 6 str. Femo]
          Length = 98

 Score =  124 bits (311), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 30/94 (31%), Positives = 47/94 (50%), Gaps = 2/94 (2%)

Query: 61  YLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHS 120
              VDL +FR ++ G +   + ID  +   L        +D I  +ILR    EL     
Sbjct: 1   MNGVDLPYFRKLLRGTVLYVEAIDNDLRPFLDRAE--DEVDPIERTILRLSAYELKYELD 58

Query: 121 VPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVS 154
           VP +V+I+E + +A  F   D  K+IN +LDK++
Sbjct: 59  VPYKVVINEGIEVAKVFGSDDSHKYINGILDKLA 92


>gi|225570633|ref|ZP_03779656.1| hypothetical protein CLOHYLEM_06733 [Clostridium hylemonae DSM
           15053]
 gi|225160551|gb|EEG73170.1| hypothetical protein CLOHYLEM_06733 [Clostridium hylemonae DSM
           15053]
          Length = 132

 Score =  124 bits (311), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 33/140 (23%), Positives = 59/140 (42%), Gaps = 10/140 (7%)

Query: 15  RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74
           +R   R    + ++ ++  G        E        + +LD        DL++      
Sbjct: 2   KRTQLREHIFKMVFCMEFCG------EEELPEQLALYEEQLDSAG---EEDLKYISGKSR 52

Query: 75  GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134
            +  + + ID LI+  +T  W   R++ +  +ILR  V E+     VP  V I E V +A
Sbjct: 53  NIAAKTEEIDRLINEHVT-GWKTGRMNKVDLTILRLAVYEMNWDEDVPTGVAIDEAVELA 111

Query: 135 HDFFYGDEPKFINAVLDKVS 154
             +   + P F+N VL K++
Sbjct: 112 KKYSGEEGPAFVNGVLAKLA 131


>gi|146329208|ref|YP_001209382.1| transcription antitermination factor NusB [Dichelobacter nodosus
           VCS1703A]
 gi|146232678|gb|ABQ13656.1| transcription antitermination factor NusB [Dichelobacter nodosus
           VCS1703A]
          Length = 145

 Score =  124 bits (311), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 37/147 (25%), Positives = 66/147 (44%), Gaps = 13/147 (8%)

Query: 14  HRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVII 73
            +R  AR   +Q LYQ  IIG    EI+ E +           +++    +D ++F    
Sbjct: 12  EQRSQARRQLLQGLYQWQIIGDDA-EIVKENQM----------IDARAGEIDHDYFDAAW 60

Query: 74  HGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCI 133
             +    + +D   +  +      + LD +  +IL  G+ EL +   +   VII+E V +
Sbjct: 61  AYITTNTEQLDCCAADFIRRN--MATLDPVEHAILWIGIYELTQRIDIHQNVIINEAVEL 118

Query: 134 AHDFFYGDEPKFINAVLDKVSRKEEIK 160
           A  F   D  KF+N VLD+ +++   +
Sbjct: 119 AKQFGSDDGYKFVNGVLDQCAKRHRAR 145


>gi|297537700|ref|YP_003673469.1| NusB antitermination factor [Methylotenera sp. 301]
 gi|297257047|gb|ADI28892.1| NusB antitermination factor [Methylotenera sp. 301]
          Length = 175

 Score =  124 bits (311), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 32/141 (22%), Positives = 64/141 (45%), Gaps = 13/141 (9%)

Query: 14  HRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVII 73
             R  +R   ++A+Y+  +     T +             ++  +  Y   D  +F+ ++
Sbjct: 35  QNRRKSRELVLKAVYRGMLNQSEMTAVYR-----------DMAEDPDYAKADEAYFKQLL 83

Query: 74  HGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCI 133
             V +    +D  +++ +  +   S L  I  +IL+    EL+   S+P  V+I+E V +
Sbjct: 84  EAVGEHATELDEKMAAFIDRQ--VSELSPIEHAILQISGCELMFDMSIPYRVVINEGVEL 141

Query: 134 AHDFFYGDEPKFINAVLDKVS 154
           A  +   D  K+IN VLDK++
Sbjct: 142 AKIYGGIDGHKYINGVLDKLA 162


>gi|258545998|ref|ZP_05706232.1| N utilization substance protein B family protein (protein NusB)
           [Cardiobacterium hominis ATCC 15826]
 gi|258518766|gb|EEV87625.1| N utilization substance protein B family protein (protein NusB)
           [Cardiobacterium hominis ATCC 15826]
          Length = 144

 Score =  124 bits (311), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 39/150 (26%), Positives = 63/150 (42%), Gaps = 15/150 (10%)

Query: 8   KDLKLSH--RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVD 65
           K+LK     +R  AR   +QALYQ  + G     +                V+     +D
Sbjct: 2   KNLKRQAIEQRSRARRQLLQALYQWQMSGDDPWSVRRNRL-----------VDPKTGDID 50

Query: 66  LEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEV 125
            ++F      + +++   D  ++         S LD +  +IL  G+ ELIE   +   V
Sbjct: 51  DDYFNAAFDTISEKRDLYDTRVAEHTHR--RPSTLDPVERAILWIGMYELIERFDIHPTV 108

Query: 126 IISEYVCIAHDFFYGDEPKFINAVLDKVSR 155
            I+E V +A  F   D  K+INA LD + +
Sbjct: 109 TINEAVELAKQFGAADSYKYINATLDHLGK 138


>gi|221195846|ref|ZP_03568899.1| transcription antitermination factor NusB [Atopobium rimae ATCC
           49626]
 gi|221184320|gb|EEE16714.1| transcription antitermination factor NusB [Atopobium rimae ATCC
           49626]
          Length = 161

 Score =  124 bits (311), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 30/139 (21%), Positives = 68/139 (48%), Gaps = 14/139 (10%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           R +AR  A+Q L+Q +    +  E++         ++  LD           +   +  G
Sbjct: 8   RTLARSQALQLLFQAEQTNRTVEEVLQ---GEYVLSEGPLD----------PYAEKLACG 54

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
               +  +D+++++  +  WS SR+  +  ++L+  + E++E   V V + I+E + ++H
Sbjct: 55  TDGIRDDLDMILNAY-SHGWSVSRMPSVDRNLLQLSLYEMLEVSEVDVSITINEVIELSH 113

Query: 136 DFFYGDEPKFINAVLDKVS 154
            +   + P+FIN +L +V+
Sbjct: 114 AYCGDESPRFINGILGRVA 132


>gi|28895207|ref|NP_801557.1| transcription antitermination protein NusB [Streptococcus pyogenes
           SSI-1]
 gi|28810453|dbj|BAC63390.1| putative transcriptional terminator [Streptococcus pyogenes SSI-1]
          Length = 126

 Score =  123 bits (310), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 25/89 (28%), Positives = 46/89 (51%)

Query: 68  WFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVII 127
           +   ++ GV + K+ +D LIS+ L + WS  RL +   ++LR G+ E+      P  V +
Sbjct: 31  FLLSLVTGVNNHKEELDNLISTHLKKGWSLERLTLTDKTLLRLGLFEIKYFDETPDRVAL 90

Query: 128 SEYVCIAHDFFYGDEPKFINAVLDKVSRK 156
           +E + +A  +      KFIN +L +   +
Sbjct: 91  NEIIEVAKKYSDETSAKFINGLLSQYVSE 119


>gi|239627505|ref|ZP_04670536.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA]
 gi|239517651|gb|EEQ57517.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA]
          Length = 149

 Score =  123 bits (310), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 30/146 (20%), Positives = 60/146 (41%), Gaps = 9/146 (6%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVY--------LHVDLE 67
           R   R    + L+  D        +    + ++   + + D E V            D E
Sbjct: 3   RRELREHCFKMLFSADFYPTQEEAVAQLDQYFQSPEEYDTDPEGVLQVLHKVELKSEDSE 62

Query: 68  WFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVII 127
           + +     ++D+   ID  ++  +   W   R+  +  +ILR  + E++   ++P +V I
Sbjct: 63  YLQARTVNIIDKIPEIDAKLNE-VAAGWKTKRMGKVELTILRLALFEMLYDENIPEKVSI 121

Query: 128 SEYVCIAHDFFYGDEPKFINAVLDKV 153
           +E V +A  F   D P F+N +L + 
Sbjct: 122 NEAVELAKKFGGNDSPAFVNGILARF 147


>gi|255655206|ref|ZP_05400615.1| N utilization substance protein B [Clostridium difficile QCD-23m63]
 gi|296451191|ref|ZP_06892932.1| transcription antitermination factor NusB [Clostridium difficile
           NAP08]
 gi|296880457|ref|ZP_06904419.1| transcription antitermination factor NusB [Clostridium difficile
           NAP07]
 gi|296260012|gb|EFH06866.1| transcription antitermination factor NusB [Clostridium difficile
           NAP08]
 gi|296428411|gb|EFH14296.1| transcription antitermination factor NusB [Clostridium difficile
           NAP07]
          Length = 168

 Score =  123 bits (310), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 34/165 (20%), Positives = 65/165 (39%), Gaps = 21/165 (12%)

Query: 11  KLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYET-------------------YRFCA 51
           K   ++   R   ++ +YQI+I       +    +                    Y    
Sbjct: 3   KDRAQKSTTREYIMKLIYQININKEDFETLEDRVDNFLKDNSEHIINRYKELALQYSKNT 62

Query: 52  DTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAG 111
           + +L+   +   +D ++   +   + +    ID LI+    + W+  R+  +  SILR  
Sbjct: 63  NLKLEDTEIEDVIDKKYINTVCKALKENHDKIDELINKH-AKNWTVDRMPKVDVSILRLS 121

Query: 112 VLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRK 156
           V E++     P +V I+E V +A  +     PKFIN +L  V  +
Sbjct: 122 VCEILY-LDTPNKVSINEAVELAKIYCDDKSPKFINGILGSVVDE 165


>gi|292670715|ref|ZP_06604141.1| transcription antitermination factor NusB [Selenomonas noxia ATCC
           43541]
 gi|292647661|gb|EFF65633.1| transcription antitermination factor NusB [Selenomonas noxia ATCC
           43541]
          Length = 138

 Score =  123 bits (310), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 29/144 (20%), Positives = 58/144 (40%), Gaps = 10/144 (6%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           R  AR AA+  L+Q++       E           +D  +D        DL +   ++HG
Sbjct: 3   RRSAREAALLTLFQLEFDADKACE--------ERVSDLAIDEVDGITEEDLPYAHNLVHG 54

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHS-VPVEVIISEYVCIA 134
                  ID  I   + ++W   R+  +  +++R    E+      +   V I+E V +A
Sbjct: 55  TRSFLSEIDAEIER-MAKEWKLRRMAAVDRNLIRMAYYEMRYQEERIDPPVAINEAVELA 113

Query: 135 HDFFYGDEPKFINAVLDKVSRKEE 158
             +   D  +++N +L  + +  +
Sbjct: 114 KKYGSDDAGRYVNGILAAMQKAVQ 137


>gi|291525244|emb|CBK90831.1| transcription antitermination factor NusB [Eubacterium rectale DSM
           17629]
 gi|291529297|emb|CBK94883.1| transcription antitermination factor NusB [Eubacterium rectale
           M104/1]
          Length = 131

 Score =  123 bits (310), Expect = 8e-27,   Method: Composition-based stats.
 Identities = 28/139 (20%), Positives = 56/139 (40%), Gaps = 10/139 (7%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           R   R    + L++++    S  E+  + E          D E        ++       
Sbjct: 3   RSKIRENVFKMLFRVEFHDKS--ELAEQMELLNDELTNPTDEEK-------QYIDEKCSA 53

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
           +++    +D LI    +  W  +R+  +  +I+R  V E+     +P +V I+E V +A 
Sbjct: 54  IIEHMAELDALIDEK-STGWKTNRMAKVDLAIIRLAVYEIKFEDDIPTKVSINEAVELAK 112

Query: 136 DFFYGDEPKFINAVLDKVS 154
            +   +   F+N VL K +
Sbjct: 113 KYGADESGAFVNGVLAKFA 131


>gi|220931474|ref|YP_002508382.1| NusB antitermination factor [Halothermothrix orenii H 168]
 gi|259514846|sp|B8D2G0|NUSB_HALOH RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|219992784|gb|ACL69387.1| NusB antitermination factor [Halothermothrix orenii H 168]
          Length = 134

 Score =  123 bits (310), Expect = 8e-27,   Method: Composition-based stats.
 Identities = 45/143 (31%), Positives = 70/143 (48%), Gaps = 13/143 (9%)

Query: 10  LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF 69
           +K++  R   R+ A+Q LY +DI   S   I    +T R     ++  +  Y      +F
Sbjct: 1   MKIT--RHQERVWALQILYSLDIS--SELNIQKARKTCREFKYKKVLDKKRY------YF 50

Query: 70  RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISE 129
             I+ GV++ +Q +D +I+      W   R+  I  +ILR  + E+     +PV V I E
Sbjct: 51  EDIVEGVINSRQDLDSIINKY-AIDWDVERMACIDRNILRIALYEI--ESGLPVGVAIDE 107

Query: 130 YVCIAHDFFYGDEPKFINAVLDK 152
            V IA DF   + PKFIN +L K
Sbjct: 108 AVEIAKDFGDSNSPKFINGILAK 130


>gi|229820523|ref|YP_002882049.1| NusB antitermination factor [Beutenbergia cavernae DSM 12333]
 gi|259514802|sp|C5C681|NUSB_BEUC1 RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|229566436|gb|ACQ80287.1| NusB antitermination factor [Beutenbergia cavernae DSM 12333]
          Length = 153

 Score =  123 bits (309), Expect = 8e-27,   Method: Composition-based stats.
 Identities = 31/102 (30%), Positives = 50/102 (49%), Gaps = 1/102 (0%)

Query: 66  LEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEV 125
            E+   I+ GV   +  ID L+ +   + WS  R+  +  +ILR GV EL+    VP  V
Sbjct: 51  REYTVEIVEGVAAHQARIDELLETY-AQGWSLERMPAVDRAILRIGVWELLFNDDVPDAV 109

Query: 126 IISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRSGCVSA 167
            + E V +A +    D P F+N +L ++ R   + R    +A
Sbjct: 110 AVDEAVALAAELSTDDSPTFVNGLLGQLLRLAPVLRDEEAAA 151


>gi|118595243|ref|ZP_01552590.1| transcription antitermination protein NusB [Methylophilales
           bacterium HTCC2181]
 gi|118441021|gb|EAV47648.1| transcription antitermination protein NusB [Methylophilales
           bacterium HTCC2181]
          Length = 155

 Score =  123 bits (309), Expect = 9e-27,   Method: Composition-based stats.
 Identities = 39/163 (23%), Positives = 70/163 (42%), Gaps = 18/163 (11%)

Query: 2   TIQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVY 61
           T    KK  K  + R  +R   ++++Y+  +      +I             ++  +  +
Sbjct: 6   TKTSGKK--KPINNRRKSRELVMKSIYRGIVNQFDINQI-----------KKDIREDPDF 52

Query: 62  LHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSV 121
           +  D   +  I+ GV +    +   I + L    S+  L  I  +IL + + EL     V
Sbjct: 53  VRSDESMYLSIVEGVHNNFDSLKEEIKTYLDR--SYDELSPIELAILFSSLYELKFSLDV 110

Query: 122 PVEVIISEYVCIAHDFFYGDEPKFINAVLDKVS---RKEEIKR 161
           P  V+I+E + +A  F   D  KFIN +L+K +   RK E+ R
Sbjct: 111 PYRVVINEAIEVAKSFGGVDGFKFINGILNKAAQHNRKNELSR 153


>gi|170017709|ref|YP_001728628.1| transcription termination factor [Leuconostoc citreum KM20]
 gi|169804566|gb|ACA83184.1| Transcription termination factor [Leuconostoc citreum KM20]
          Length = 140

 Score =  123 bits (309), Expect = 9e-27,   Method: Composition-based stats.
 Identities = 37/144 (25%), Positives = 63/144 (43%), Gaps = 14/144 (9%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           R  +R AA Q L+ ++        I   Y+      D +            ++   +++G
Sbjct: 6   RHESRQAAFQILFALE-KDPQNNNIDRLYDIVLEGKDFD------------DYLPRLVNG 52

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
           ++  K  +D  IS  L   W+ +R++     ILR  + EL +   VP +V I E + +A 
Sbjct: 53  ILGNKIDLDAQISEHLAAGWAIARINKADLVILRLAIYELSQQL-VPYKVAIDEALILAK 111

Query: 136 DFFYGDEPKFINAVLDKVSRKEEI 159
            F   D+ KF+N VL   + K E 
Sbjct: 112 TFADEDDRKFVNGVLKNFAPKVEA 135


>gi|218132225|ref|ZP_03461029.1| hypothetical protein BACPEC_00082 [Bacteroides pectinophilus ATCC
           43243]
 gi|217992884|gb|EEC58884.1| hypothetical protein BACPEC_00082 [Bacteroides pectinophilus ATCC
           43243]
          Length = 135

 Score =  123 bits (309), Expect = 9e-27,   Method: Composition-based stats.
 Identities = 34/144 (23%), Positives = 63/144 (43%), Gaps = 10/144 (6%)

Query: 10  LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF 69
           +++   R   R      L++++     ++EI S+   Y    D   D E  Y+       
Sbjct: 1   MEIKMTRHTIRKHIFSMLFRVEF--HDSSEISSQDGLYLDTIDNITDEERGYMEKR---- 54

Query: 70  RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISE 129
              +  +++    ID  + S ++E W   R+  +  +ILR  V EL+    +P  V I+E
Sbjct: 55  ---VSAIVELLPEIDKKLES-VSEGWKLERMGKVELTILRLAVYELLYDDDIPANVAINE 110

Query: 130 YVCIAHDFFYGDEPKFINAVLDKV 153
            V +A  +     P F+N +L K+
Sbjct: 111 AVELAKVYGGDTSPAFVNGILAKL 134


>gi|289523061|ref|ZP_06439915.1| transcription antitermination factor NusB [Anaerobaculum
           hydrogeniformans ATCC BAA-1850]
 gi|289503604|gb|EFD24768.1| transcription antitermination factor NusB [Anaerobaculum
           hydrogeniformans ATCC BAA-1850]
          Length = 151

 Score =  123 bits (309), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 35/153 (22%), Positives = 64/153 (41%), Gaps = 15/153 (9%)

Query: 14  HRRGIARLAAVQALYQIDI-IGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVI 72
            +R  AR  A+Q LY +DI    +  E ++ +                     + +   +
Sbjct: 4   QQRRRAREIALQLLYALDIRNDQTPDEAMALF------------PFDGESEEVMNYAIWL 51

Query: 73  IHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVC 132
           +  +  ++  ID LI   +T  W   R+  +    +R  + E +    VP+ V ISE + 
Sbjct: 52  VKEIWGKRVEIDNLIRMHIT-GWRPERMVTVDLEAIRLALFEGVYSKVVPIPVAISEAIE 110

Query: 133 IAHDFFYGDEPKFINAVLDKVSRK-EEIKRSGC 164
           +A  F   +  +F+N VL K+ R   E++  G 
Sbjct: 111 LAKRFGTENSGRFVNGVLGKIVRSIAEVEGDGK 143


>gi|111114929|ref|YP_709547.1| transcription antitermination protein NusB [Borrelia afzelii PKo]
 gi|119372279|sp|Q0SP57|NUSB_BORAP RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|110890203|gb|ABH01371.1| N-utilization substance protein B [Borrelia afzelii PKo]
          Length = 137

 Score =  123 bits (309), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 38/143 (26%), Positives = 67/143 (46%), Gaps = 9/143 (6%)

Query: 17  GIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGV 76
              R+ A Q +Y IDI   +  +I   +       D  LD+E+  +     ++  +++G 
Sbjct: 2   HEVRVLAFQKIYSIDINQSAMDDIFDIFN----IEDKGLDIENESIK---SFYSSLVNGT 54

Query: 77  MDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECH-SVPVEVIISEYVCIAH 135
            +  +HID LI   ++  WS  R+D +  +ILR GV  L   +       +I + + IA 
Sbjct: 55  FNNLEHIDSLIRD-ISWNWSLDRMDKVDLAILRMGVYSLKFQNFENSKRAVIDDAILIAK 113

Query: 136 DFFYGDEPKFINAVLDKVSRKEE 158
            +   +  KFIN +LD + +  E
Sbjct: 114 KYGSKNSCKFINGILDALLKNME 136


>gi|238924571|ref|YP_002938087.1| NusB antitermination factor [Eubacterium rectale ATCC 33656]
 gi|259514834|sp|C4ZCZ0|NUSB_EUBR3 RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|238876246|gb|ACR75953.1| NusB antitermination factor [Eubacterium rectale ATCC 33656]
          Length = 131

 Score =  123 bits (309), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 28/139 (20%), Positives = 56/139 (40%), Gaps = 10/139 (7%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           R   R    + L++++    S  E+  + E          D E        ++       
Sbjct: 3   RSKIRENVFKMLFRVEFHDKS--ELAEQMELLNDELTNPTDEE-------RQYIDEKCSA 53

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
           +++    +D LI    +  W  +R+  +  +I+R  V E+     +P +V I+E V +A 
Sbjct: 54  IIEHMAELDALIDEK-STGWKTNRMAKVDLAIIRLAVYEIKFEDDIPTKVSINEAVELAK 112

Query: 136 DFFYGDEPKFINAVLDKVS 154
            +   +   F+N VL K +
Sbjct: 113 KYGADESGAFVNGVLAKFA 131


>gi|297566828|ref|YP_003685800.1| NusB antitermination factor [Meiothermus silvanus DSM 9946]
 gi|296851277|gb|ADH64292.1| NusB antitermination factor [Meiothermus silvanus DSM 9946]
          Length = 156

 Score =  123 bits (309), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 33/146 (22%), Positives = 64/146 (43%), Gaps = 5/146 (3%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVD---LEWFRVI 72
           R  AR  A + L++  + G S  E            +   + +S    +D   LE+ R +
Sbjct: 2   RRKARELAFKVLFEHAVGGVSLEEAWEHVSQNHDPEEASSERDSYDDPLDQGGLEFARRL 61

Query: 73  IHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVC 132
           + G    +  ID ++ + + + WSF ++     ++LR    E++     P   +I   V 
Sbjct: 62  LEGYQRHESEIDEVLGNTI-QGWSFGQMAKTDLAVLRLAAYEMLYEP-TPYAPLIEVAVK 119

Query: 133 IAHDFFYGDEPKFINAVLDKVSRKEE 158
           IA  +   D  +F+N VL ++ ++ E
Sbjct: 120 IAKRYGGEDSGRFVNGVLGRLLKRIE 145


>gi|319937360|ref|ZP_08011767.1| hypothetical protein HMPREF9488_02602 [Coprobacillus sp. 29_1]
 gi|319807726|gb|EFW04319.1| hypothetical protein HMPREF9488_02602 [Coprobacillus sp. 29_1]
          Length = 134

 Score =  122 bits (308), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 39/139 (28%), Positives = 63/139 (45%), Gaps = 10/139 (7%)

Query: 15  RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74
           RR IAR  A   +YQ  ++  S  +I++     +    +E           + + R ++ 
Sbjct: 5   RRQIAREKATIGVYQNLLVDSSLEDILTFLSEEKTLTKSEET---------MAFSRWLVE 55

Query: 75  GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134
             +  K+    LI   L + W F RL M+  +IL     EL+E   +P  ++I+E V  A
Sbjct: 56  TTLQNKESYQTLIEKHLKKGWKFERLSMMEKAILMIAACELLES-DLPKTIVINEAVLNA 114

Query: 135 HDFFYGDEPKFINAVLDKV 153
             F   D  KFIN VL ++
Sbjct: 115 KKFCDDDSYKFINGVLGQI 133


>gi|241894790|ref|ZP_04782086.1| transcription antitermination protein NusB [Weissella
           paramesenteroides ATCC 33313]
 gi|241872002|gb|EER75753.1| transcription antitermination protein NusB [Weissella
           paramesenteroides ATCC 33313]
          Length = 139

 Score =  122 bits (308), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 37/138 (26%), Positives = 66/138 (47%), Gaps = 8/138 (5%)

Query: 15  RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74
            R   R AA Q+L+ + +     T  +    T     D E+  E   +  DL     ++ 
Sbjct: 5   NRHQIRQAAFQSLFGLALN---PTADVDTTITQVLVGDPEIAWEDE-IPADL---TSVVL 57

Query: 75  GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134
           GV+ ++  +DL+I+  L+  W+  RL+     ++R  + E      VP ++ ++E + +A
Sbjct: 58  GVVAKQDELDLMITDHLSSDWTLDRLNTTDLVLMRLALYEAKFT-DVPAKIAVNEALQLA 116

Query: 135 HDFFYGDEPKFINAVLDK 152
           HDF      KFIN +L+K
Sbjct: 117 HDFTDDKSRKFINGILNK 134


>gi|206901052|ref|YP_002250763.1| transcription antitermination factor NusB [Dictyoglomus
           thermophilum H-6-12]
 gi|254772635|sp|B5YE05|NUSB_DICT6 RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|206740155|gb|ACI19213.1| transcription antitermination factor NusB [Dictyoglomus
           thermophilum H-6-12]
          Length = 144

 Score =  122 bits (308), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 32/150 (21%), Positives = 62/150 (41%), Gaps = 20/150 (13%)

Query: 12  LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71
           +S  R   R   +Q L+Q D+      E+  ++              S +      +   
Sbjct: 1   MSKERTRCREKVLQLLFQKDLGQ----EVEVDF--------------SDFSPQGQAFAYR 42

Query: 72  IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
           +  G +  K   D +IS   ++ W   R+  +  +ILR  + E+     +P  V ++E V
Sbjct: 43  LYDGALQYKDLADSIISRF-SKNWKLERMGALERNILRLAIAEMFTFSDIPQAVTVNEAV 101

Query: 132 CIAHDFFYGDEPKFINAVLDKVSRK-EEIK 160
            +A  +   +  +F+N +L  + R  EE+K
Sbjct: 102 ELAKKYVSPEAGRFVNGILRNIVRNWEEVK 131


>gi|51598370|ref|YP_072558.1| transcription antitermination protein NusB [Borrelia garinii PBi]
 gi|81610223|sp|Q662Q5|NUSB_BORGA RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|51572941|gb|AAU06966.1| N-utilization substance protein B [Borrelia garinii PBi]
          Length = 142

 Score =  122 bits (308), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 38/143 (26%), Positives = 67/143 (46%), Gaps = 9/143 (6%)

Query: 17  GIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGV 76
              R+ A Q +Y IDI   +  +I   +       D  LD+E+  +     ++  +++G 
Sbjct: 2   HEVRVLAFQKIYSIDINQSAMDDIFDIFS----IEDKGLDIENESIK---SFYSSLVNGT 54

Query: 77  MDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECH-SVPVEVIISEYVCIAH 135
            +  ++ID LI   ++  WS  R+D +  +ILR GV  L   +       +I E + IA 
Sbjct: 55  FNNLEYIDSLIKD-ISWNWSLDRMDKVDLAILRMGVYSLKFQNFENSKRALIDEAILIAK 113

Query: 136 DFFYGDEPKFINAVLDKVSRKEE 158
            +   +  KFIN +LD + +  E
Sbjct: 114 KYGSKNSDKFINGILDALLKNME 136


>gi|320529119|ref|ZP_08030211.1| transcription antitermination factor NusB [Selenomonas artemidis
           F0399]
 gi|320138749|gb|EFW30639.1| transcription antitermination factor NusB [Selenomonas artemidis
           F0399]
          Length = 137

 Score =  122 bits (308), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 25/141 (17%), Positives = 54/141 (38%), Gaps = 10/141 (7%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           R  AR AA+  L+Q+D              +    ++            DL + + ++ G
Sbjct: 3   RRHAREAALLTLFQMDFSANEA--------SLYDVSEIAAGAVEGLKEKDLPYAQGLVRG 54

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHS-VPVEVIISEYVCIA 134
                  ID  I+    ++W   R+  +  +++R    E+      +     I+E V +A
Sbjct: 55  TRAAIGEIDAAIARS-AKEWKLERMPGVDRNLIRMAFYEMYYQEERIDPGTAINEAVELA 113

Query: 135 HDFFYGDEPKFINAVLDKVSR 155
             +   D  +++N +L  + +
Sbjct: 114 KKYGAEDAGRYVNGILSAMQK 134


>gi|304389451|ref|ZP_07371414.1| transcription antitermination factor NusB [Mobiluncus curtisii
           subsp. curtisii ATCC 35241]
 gi|304327261|gb|EFL94496.1| transcription antitermination factor NusB [Mobiluncus curtisii
           subsp. curtisii ATCC 35241]
          Length = 191

 Score =  122 bits (308), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 34/140 (24%), Positives = 59/140 (42%), Gaps = 8/140 (5%)

Query: 14  HRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVII 73
            RR   R+ AV  LY+  + G  T E I      R         E+        +   I+
Sbjct: 6   PRRTRERIRAVDVLYEAHVRGWDTPEGIFSLSQLR-------QDETTAQTPLPAYAVEIL 58

Query: 74  HGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCI 133
            GV +  + ID  +++  ++ W   R+  +  +I+R    E++    V   V I+  + I
Sbjct: 59  EGVAEHLERIDAALATY-SKAWPLHRMPEVDLAIMRVAAWEILFNPDVTGPVAITAAMQI 117

Query: 134 AHDFFYGDEPKFINAVLDKV 153
           A +    + PKFIN +L  +
Sbjct: 118 AEERSTDESPKFINGLLGAI 137


>gi|160893229|ref|ZP_02074017.1| hypothetical protein CLOL250_00775 [Clostridium sp. L2-50]
 gi|156865312|gb|EDO58743.1| hypothetical protein CLOL250_00775 [Clostridium sp. L2-50]
          Length = 144

 Score =  122 bits (307), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 31/142 (21%), Positives = 56/142 (39%), Gaps = 4/142 (2%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEY---ETYRFCADTELDVESVYLHVDLEWFRVI 72
           R   R    + L+ ++    S     +E        +  D            +  +    
Sbjct: 3   RREIRETVFKILFSLEFNDVSEIREEAELELEHASLYDEDDNKMDAVAMTEEEKAYIIDR 62

Query: 73  IHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVC 132
           +  V+     ID  IS  +++ W   R+     +ILR  V E+     +PV+V I+E V 
Sbjct: 63  VEAVVSHITEIDETISG-ISQGWKLGRIGKAELAILRLAVYEIKFDEDIPVKVAINEAVE 121

Query: 133 IAHDFFYGDEPKFINAVLDKVS 154
           +A  +   +   FINA+L K++
Sbjct: 122 LAKTYCDVEAKSFINALLAKLA 143


>gi|322379027|ref|ZP_08053430.1| transcription antitermination protein NusB [Helicobacter suis HS1]
 gi|322380793|ref|ZP_08054899.1| transcription antitermination protein NusB [Helicobacter suis HS5]
 gi|321146797|gb|EFX41591.1| transcription antitermination protein NusB [Helicobacter suis HS5]
 gi|321148519|gb|EFX43016.1| transcription antitermination protein NusB [Helicobacter suis HS1]
          Length = 133

 Score =  122 bits (307), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 32/142 (22%), Positives = 66/142 (46%), Gaps = 13/142 (9%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           R   R A V  LY  +    +  E  S++   R   +              ++   ++ G
Sbjct: 4   RSQVREAVVGLLYAYESGNEAVLEKASDFLNQRKIKN-----------AQQQFALELLKG 52

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
            +DR +++D ++   L + W   R+  +  +ILR G  E++   + P  ++I+E + +A 
Sbjct: 53  TLDRLENLDQILQPLL-KDWPIKRIGSMERAILRLGAYEVLYTTTKPP-IVINEAIELAK 110

Query: 136 DFFYGDEPKFINAVLDKVSRKE 157
            +     PK INA+LD +++++
Sbjct: 111 QYGEDQAPKLINAILDVLAKQK 132


>gi|229075890|ref|ZP_04208866.1| N utilization substance protein B [Bacillus cereus Rock4-18]
 gi|228707205|gb|EEL59402.1| N utilization substance protein B [Bacillus cereus Rock4-18]
          Length = 114

 Score =  122 bits (307), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 29/87 (33%), Positives = 45/87 (51%), Gaps = 1/87 (1%)

Query: 67  EWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVI 126
           E+   ++ G +D K+ ID  I   L +KW   R+ ++  SILR  V E+     +P  V 
Sbjct: 25  EFLESLVVGFVDNKEEIDAAIRQNL-KKWKLERISIVDRSILRVAVYEMKYMEEIPHNVT 83

Query: 127 ISEYVCIAHDFFYGDEPKFINAVLDKV 153
           I+E + IA  F   +  +FIN VL  +
Sbjct: 84  INEAIEIAKTFGDEESRRFINGVLSNI 110


>gi|315656698|ref|ZP_07909585.1| transcription antitermination factor NusB [Mobiluncus curtisii
           subsp. holmesii ATCC 35242]
 gi|315492653|gb|EFU82257.1| transcription antitermination factor NusB [Mobiluncus curtisii
           subsp. holmesii ATCC 35242]
          Length = 191

 Score =  122 bits (307), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 34/140 (24%), Positives = 59/140 (42%), Gaps = 8/140 (5%)

Query: 14  HRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVII 73
            RR   R+ AV  LY+  + G  T E I      R         E+        +   I+
Sbjct: 6   PRRTRERVRAVDVLYEAHVRGWDTPEGIFSLSQLR-------QDETTAQTPLPAYAVEIL 58

Query: 74  HGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCI 133
            GV +  + ID  +++  ++ W   R+  +  +I+R    E++    V   V I+  + I
Sbjct: 59  EGVAEHLERIDAALATY-SKAWPLHRMPEVDLAIMRVAAWEILFNPDVTGPVAITAAMQI 117

Query: 134 AHDFFYGDEPKFINAVLDKV 153
           A +    + PKFIN +L  +
Sbjct: 118 AEERSTDESPKFINGLLGAI 137


>gi|332678675|gb|AEE87804.1| Transcription termination protein NusB [Francisella cf. novicida
           Fx1]
          Length = 141

 Score =  122 bits (307), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 44/153 (28%), Positives = 70/153 (45%), Gaps = 13/153 (8%)

Query: 10  LKLSHR-RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEW 68
           +K + R R  ARL AVQALYQ  I   + +E+  +Y              +   + D + 
Sbjct: 1   MKTTARARNNARLYAVQALYQKKIADNTFSELKVQYYA----------DNADRHYTDWDL 50

Query: 69  FRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIIS 128
           F  +I  V   +  ID  I    +       ++ +  ++L+  + ELIEC   P +VII 
Sbjct: 51  FYRLIDAVKTNQDTIDKYIKENSSNG--VESINYVDYAVLQVAIAELIECLENPYQVIIK 108

Query: 129 EYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKR 161
           EYV I +     +  KFINAVL  +++    + 
Sbjct: 109 EYVEICYSMGTEEGYKFINAVLQNLAKSIRGEE 141


>gi|56708465|ref|YP_170361.1| N utilisation substance protein B [Francisella tularensis subsp.
           tularensis SCHU S4]
 gi|110670936|ref|YP_667493.1| N utilisation substance protein B [Francisella tularensis subsp.
           tularensis FSC198]
 gi|224457622|ref|ZP_03666095.1| N utilisation substance protein B [Francisella tularensis subsp.
           tularensis MA00-2987]
 gi|254371089|ref|ZP_04987091.1| N utilization substance protein B [Francisella tularensis subsp.
           tularensis FSC033]
 gi|254875309|ref|ZP_05248019.1| N utilization substance protein B [Francisella tularensis subsp.
           tularensis MA00-2987]
 gi|54113219|gb|AAV29243.1| NT02FT2024 [synthetic construct]
 gi|56604957|emb|CAG46051.1| N utilisation substance protein B [Francisella tularensis subsp.
           tularensis SCHU S4]
 gi|110321269|emb|CAL09434.1| N utilisation substance protein B [Francisella tularensis subsp.
           tularensis FSC198]
 gi|151569329|gb|EDN34983.1| N utilization substance protein B [Francisella tularensis subsp.
           tularensis FSC033]
 gi|254841308|gb|EET19744.1| N utilization substance protein B [Francisella tularensis subsp.
           tularensis MA00-2987]
 gi|282159666|gb|ADA79057.1| N utilisation substance protein B [Francisella tularensis subsp.
           tularensis NE061598]
          Length = 141

 Score =  122 bits (307), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 44/147 (29%), Positives = 69/147 (46%), Gaps = 13/147 (8%)

Query: 10  LKLSHR-RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEW 68
           +K + R R  ARL AVQALYQ  I   + +E+  +Y              +   + D + 
Sbjct: 1   MKTTARARNNARLYAVQALYQKKIADNTFSELKIQYYA----------DNADRHYTDWDL 50

Query: 69  FRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIIS 128
           F  +I  V   +  ID  I    +       ++ +  ++L+  + ELIEC   P +VII 
Sbjct: 51  FYRLIDAVKTNQDTIDKYIKENSSNG--VESINYVDYAVLQVAIAELIECLENPYQVIIK 108

Query: 129 EYVCIAHDFFYGDEPKFINAVLDKVSR 155
           EYV I +     +  KFINAVL  +++
Sbjct: 109 EYVEICYSMGTEEGYKFINAVLQNLAK 135


>gi|312143732|ref|YP_003995178.1| NusB antitermination factor [Halanaerobium sp. 'sapolanicus']
 gi|311904383|gb|ADQ14824.1| NusB antitermination factor [Halanaerobium sp. 'sapolanicus']
          Length = 133

 Score =  122 bits (307), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 34/140 (24%), Positives = 62/140 (44%), Gaps = 13/140 (9%)

Query: 16  RGIARLAAVQALYQIDIIGC-STTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74
           R   R+  +Q LY +DI         +  ++   F  + E+  E +       + + ++ 
Sbjct: 6   RHKQRIWVLQILYGLDIRNKLDLESALKSFKE--FLKEKEIKKEDI-------YAKELLL 56

Query: 75  GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134
           GV+  ++ +D  I+      W+  R+  +  +ILR  + E+     +P  V I+E V IA
Sbjct: 57  GVITEREILDAQINEQ-AIDWTIERMPPVDRNILRIAIYEIQH--EMPAGVAINEAVKIA 113

Query: 135 HDFFYGDEPKFINAVLDKVS 154
             F     P FIN +L K +
Sbjct: 114 KKFADDRSPSFINGILAKFA 133


>gi|163781900|ref|ZP_02176900.1| transcription antitermination protein NusB [Hydrogenivirga sp.
           128-5-R1-1]
 gi|159883120|gb|EDP76624.1| transcription antitermination protein NusB [Hydrogenivirga sp.
           128-5-R1-1]
          Length = 144

 Score =  122 bits (306), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 41/152 (26%), Positives = 66/152 (43%), Gaps = 11/152 (7%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           R  AR  ++  LY+ DI G S   I  EY   +   + E+           E+   ++  
Sbjct: 4   RKKARENSLMVLYRWDIRGDSIDRIREEYVEEKGIKNREIR----------EYMDKLLST 53

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
           V D+   ID LIS   +E WSF RL  I  ++LR GV EL+           ++Y+ I  
Sbjct: 54  VRDKLPEIDSLISEY-SEGWSFDRLGYIERNVLRLGVAELLYADPPDPGRAFNDYLDIVK 112

Query: 136 DFFYGDEPKFINAVLDKVSRKEEIKRSGCVSA 167
            +      +F+N +L K+ ++     S   + 
Sbjct: 113 RYADRKAARFVNGILSKIYKEHRATSSAKRAG 144


>gi|315655389|ref|ZP_07908289.1| transcription antitermination protein NusB [Mobiluncus curtisii
           ATCC 51333]
 gi|315490329|gb|EFU79954.1| transcription antitermination protein NusB [Mobiluncus curtisii
           ATCC 51333]
          Length = 191

 Score =  122 bits (306), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 34/140 (24%), Positives = 59/140 (42%), Gaps = 8/140 (5%)

Query: 14  HRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVII 73
            RR   R+ AV  LY+  + G  T E I      R         E+        +   I+
Sbjct: 6   PRRTRERVRAVDVLYEAHVRGWDTPEGIFSLSQLR-------QDETTAQTPLPAYAVEIL 58

Query: 74  HGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCI 133
            GV +  + ID  +++  ++ W   R+  +  +I+R    E++    V   V I+  + I
Sbjct: 59  EGVAEHLERIDAALATY-SKAWPLHRMPEVDLAIMRVAAWEILFNPDVTGPVAITAAMQI 117

Query: 134 AHDFFYGDEPKFINAVLDKV 153
           A +    + PKFIN +L  +
Sbjct: 118 AEERSTDESPKFINGLLGAI 137


>gi|308234826|ref|ZP_07665563.1| transcription antitermination factor NusB [Gardnerella vaginalis
           ATCC 14018]
 gi|311114640|ref|YP_003985861.1| transcription antitermination factor NusB [Gardnerella vaginalis
           ATCC 14019]
 gi|310946134|gb|ADP38838.1| transcription antitermination factor NusB [Gardnerella vaginalis
           ATCC 14019]
          Length = 176

 Score =  122 bits (306), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 35/144 (24%), Positives = 60/144 (41%), Gaps = 12/144 (8%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           R  AR  A+  LY+ D    +   ++ E              E        ++   II G
Sbjct: 3   RSTARKRALNTLYEADEKNQNILSLLEERLK-----------EPGAQTPLPDYAVDIIRG 51

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
           V +R+  ID  ++   +  W   R+ +I  +ILR  V E++    VP +V I E + +A 
Sbjct: 52  VGERRNRIDKTLNRY-STGWKVGRMAVIDRNILRIAVWEILLNDEVPDKVAIDEAISLAK 110

Query: 136 DFFYGDEPKFINAVLDKVSRKEEI 159
            +   D   FI+ +L  +   +E 
Sbjct: 111 MYSDDDAIAFIHGLLSAIMADKEA 134


>gi|302874807|ref|YP_003843440.1| NusB antitermination factor [Clostridium cellulovorans 743B]
 gi|307690576|ref|ZP_07633022.1| transcription antitermination protein NusB [Clostridium
           cellulovorans 743B]
 gi|302577664|gb|ADL51676.1| NusB antitermination factor [Clostridium cellulovorans 743B]
          Length = 134

 Score =  122 bits (306), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 34/139 (24%), Positives = 61/139 (43%), Gaps = 7/139 (5%)

Query: 15  RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74
            R   R  A++  Y + I       +I  ++      + E   +     VD  +   I+ 
Sbjct: 2   NRRKTREIAIKLTYSLMIQQIDYKTVIENFK------EVEDKEDEDLKDVDFTFVETILS 55

Query: 75  GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134
           G+ + K + + L+S  L   W  +R+  +  +IL   + E+     +P  V I+E V IA
Sbjct: 56  GISENKSNYEELVSQNLI-GWKLNRISKLNLAILLVAIYEIKNIDDIPKAVSINEAVEIA 114

Query: 135 HDFFYGDEPKFINAVLDKV 153
             +     P FIN++LDK+
Sbjct: 115 KKYSDDKAPNFINSILDKI 133


>gi|239948522|ref|ZP_04700275.1| transcription antitermination factor NusB [Rickettsia endosymbiont
           of Ixodes scapularis]
 gi|239922798|gb|EER22822.1| transcription antitermination factor NusB [Rickettsia endosymbiont
           of Ixodes scapularis]
          Length = 156

 Score =  121 bits (305), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 43/145 (29%), Positives = 86/145 (59%), Gaps = 2/145 (1%)

Query: 14  HRRGIARLAAVQALYQ-IDIIGCSTTEIISEYETYRFCADTELD-VESVYLHVDLEWFRV 71
           +++ IAR+AAVQA+YQ I        +I+    ++    ++  D  E++ + + +  F++
Sbjct: 7   NKKSIARIAAVQAIYQNILQNNDDMDDIMQNILSFYQNNNSITDLPENLKISLSISHFKM 66

Query: 72  IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
           ++  V +    +D +I + LT     + + ++L ++LRAG+ EL+ C + P +V+I+EY 
Sbjct: 67  LVKSVFENINKLDEIIDNHLTNNKDPAHMLILLRALLRAGICELLFCPTTPAKVVINEYT 126

Query: 132 CIAHDFFYGDEPKFINAVLDKVSRK 156
            IA+D     E  F+N+VLDK++++
Sbjct: 127 DIANDMLNEHEIGFVNSVLDKIAKE 151


>gi|254368862|ref|ZP_04984875.1| N utilisation substance protein B [Francisella tularensis subsp.
           holarctica FSC022]
 gi|157121783|gb|EDO65953.1| N utilisation substance protein B [Francisella tularensis subsp.
           holarctica FSC022]
          Length = 141

 Score =  121 bits (305), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 44/153 (28%), Positives = 70/153 (45%), Gaps = 13/153 (8%)

Query: 10  LKLSHR-RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEW 68
           +K + R R  ARL AVQALYQ  I   + +E+  +Y              +   + D + 
Sbjct: 1   MKTTARARNNARLYAVQALYQKKIADNTFSELKIQYYA----------DNADRHYTDWDL 50

Query: 69  FRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIIS 128
           F  +I  V   +  ID  I    +       ++ +  ++L+  + ELIEC   P +VII 
Sbjct: 51  FYRLIDAVKTNQDTIDKYIKENSSNG--VESINYVDYAVLQVAIAELIECLENPYQVIIK 108

Query: 129 EYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKR 161
           EYV I +     +  KFINAVL  +++    + 
Sbjct: 109 EYVEICYSMGTEEGYKFINAVLQNLAKSIRSEE 141


>gi|134301537|ref|YP_001121505.1| transcription antitermination factor NusB [Francisella tularensis
           subsp. tularensis WY96-3418]
 gi|134049314|gb|ABO46385.1| transcription antitermination factor NusB [Francisella tularensis
           subsp. tularensis WY96-3418]
          Length = 141

 Score =  121 bits (305), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 44/153 (28%), Positives = 70/153 (45%), Gaps = 13/153 (8%)

Query: 10  LKLSHR-RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEW 68
           +K + R R  ARL AVQALYQ  I   + +E+  +Y              +   + D + 
Sbjct: 1   MKTTARARNNARLYAVQALYQKKIADNTFSELKIQYYA----------DNADRHYTDWDL 50

Query: 69  FRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIIS 128
           F  +I  V   +  ID  I    +       ++ +  ++L+  + ELIEC   P +VII 
Sbjct: 51  FYRLIDAVKTNQDTIDKYIKENSSNG--VESINYVDYAVLQVAIAELIECLENPYQVIIK 108

Query: 129 EYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKR 161
           EYV I +     +  KFINAVL  +++    + 
Sbjct: 109 EYVEICYSMGTEEGYKFINAVLQNLAKSIRGEE 141


>gi|315453162|ref|YP_004073432.1| N utilization substance protein B-like protein [Helicobacter felis
           ATCC 49179]
 gi|315132214|emb|CBY82842.1| N utilization substance protein B homolog [Helicobacter felis ATCC
           49179]
          Length = 134

 Score =  121 bits (305), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 29/142 (20%), Positives = 65/142 (45%), Gaps = 13/142 (9%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           R   R A V  LY  +    +  +   ++ T +   +               +   ++ G
Sbjct: 4   RSQVREAVVSLLYAYESGNEAMLKSAPDFFTQKKIKN-----------AQQRFALDLLEG 52

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
            ++    +D  ++  L + W  +R+  +  +ILR G  E++   + PV V+I+E + ++ 
Sbjct: 53  TLEHLPSLDNALTPLL-KDWDLARIGSMERAILRLGAYEILHTPTNPV-VVINEAIELSK 110

Query: 136 DFFYGDEPKFINAVLDKVSRKE 157
           ++   + PK INA+LD + +++
Sbjct: 111 NYGEDNAPKLINAILDALCKQK 132


>gi|229168926|ref|ZP_04296643.1| N utilization substance protein B [Bacillus cereus AH621]
 gi|228614518|gb|EEK71626.1| N utilization substance protein B [Bacillus cereus AH621]
          Length = 114

 Score =  121 bits (305), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 29/87 (33%), Positives = 45/87 (51%), Gaps = 1/87 (1%)

Query: 67  EWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVI 126
           E+   ++ G +D K+ ID  I   L +KW   R+ ++  SILR  V E+     +P  V 
Sbjct: 25  EFLESLVVGFVDNKEEIDAAIRQNL-KKWKLERISIVDRSILRVAVCEMKYMEEIPHNVT 83

Query: 127 ISEYVCIAHDFFYGDEPKFINAVLDKV 153
           I+E + IA  F   +  +FIN VL  +
Sbjct: 84  INEAIEIAKTFGDEESRRFINGVLSNI 110


>gi|332981364|ref|YP_004462805.1| NusB antitermination factor [Mahella australiensis 50-1 BON]
 gi|332699042|gb|AEE95983.1| NusB antitermination factor [Mahella australiensis 50-1 BON]
          Length = 134

 Score =  121 bits (305), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 33/141 (23%), Positives = 57/141 (40%), Gaps = 13/141 (9%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           R  AR  AV  +Y+ID+    + +I+  +       +            D ++   I+  
Sbjct: 3   RRQARQDAVCLMYEIDMQDGDSDDILERFFNTHALNE-----------ADAKYIDEIVKL 51

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
            ++ +  ID  I    +       L  +  +ILR    E++   SVP  V I E V +A 
Sbjct: 52  ALEHRDDIDRGIEQ--SCGRKIEYLAKMDLAILRIAAAEMLYMPSVPHRVSIDEAVELAK 109

Query: 136 DFFYGDEPKFINAVLDKVSRK 156
            +     P FIN VL  + ++
Sbjct: 110 RYGDDMSPTFINGVLAGLMKQ 130


>gi|206602422|gb|EDZ38903.1| Transcription antitermination factor (NusB) [Leptospirillum sp.
           Group II '5-way CG']
          Length = 168

 Score =  121 bits (305), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 37/179 (20%), Positives = 64/179 (35%), Gaps = 29/179 (16%)

Query: 1   MTIQDNKKDLKLSHRR-----GIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTEL 55
           M      K  K    R       AR+  +Q+L+  +                        
Sbjct: 1   MKPGSAGKKTKDPEGRFQSPFHKARIEVLQSLFAGE----------------YLPGGPPP 44

Query: 56  DVESVYLHVDLEWFRVIIHGVM-DRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLE 114
              +  L      FR  + G + + +  ID  IS   +  WS  R+  +  +ILR G+ E
Sbjct: 45  FTLTSTLPSQARLFRDRLGGTIREHRAEIDDTISRF-SVDWSLDRMGRVDRNILRMGICE 103

Query: 115 LIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKV------SRKEEIKRSGCVSA 167
           ++    VP  V I E + +AH F   +  +FIN +L ++      ++    +  G    
Sbjct: 104 ILFEPEVPFRVTIDESLELAHQFSEPEAVRFINGILHRIGTELAPAKAYASQEDGSPQP 162


>gi|219685303|ref|ZP_03540122.1| transcription antitermination factor NusB [Borrelia garinii Far04]
 gi|219673076|gb|EED30096.1| transcription antitermination factor NusB [Borrelia garinii Far04]
          Length = 142

 Score =  121 bits (305), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 38/143 (26%), Positives = 67/143 (46%), Gaps = 9/143 (6%)

Query: 17  GIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGV 76
              R+ A Q +Y IDI   +  +I   +       D  LD+E+  +     ++  +++G 
Sbjct: 2   HEVRVLAFQKIYSIDINQSAMDDIFDIFT----IEDKGLDIENESIK---SFYSSLVNGT 54

Query: 77  MDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECH-SVPVEVIISEYVCIAH 135
            +  ++ID LI   ++  WS  R+D +  +ILR GV  L   +       +I E + IA 
Sbjct: 55  FNNLEYIDNLIRD-ISWNWSLDRMDKVDLAILRMGVYSLKFQNFENSKRALIDEAILIAK 113

Query: 136 DFFYGDEPKFINAVLDKVSRKEE 158
            +   +  KFIN +LD + +  E
Sbjct: 114 KYGSKNSDKFINGILDALLKNME 136


>gi|153810477|ref|ZP_01963145.1| hypothetical protein RUMOBE_00858 [Ruminococcus obeum ATCC 29174]
 gi|149833656|gb|EDM88737.1| hypothetical protein RUMOBE_00858 [Ruminococcus obeum ATCC 29174]
          Length = 180

 Score =  121 bits (305), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 32/140 (22%), Positives = 61/140 (43%), Gaps = 10/140 (7%)

Query: 15  RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74
           RR   R    + L+   +   ++   +S+  +  F    EL+        D E  +    
Sbjct: 2   RRSEQREHIFKLLF---MTQFNSENEMSDQVSMYFDTLGELE------EKDQEAIQNKYQ 52

Query: 75  GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134
            +++    ID +++   +  W  +R++ +  + LR  V E+     VPV V I+E V +A
Sbjct: 53  HILEHLDEIDQILNEY-SRGWKTTRMNRVDLTALRLAVYEMKMDEEVPVGVAINEAVELA 111

Query: 135 HDFFYGDEPKFINAVLDKVS 154
             F   D   F+N +L K++
Sbjct: 112 KLFGGEDSGSFVNGILGKIA 131


>gi|307701058|ref|ZP_07638083.1| transcription antitermination factor NusB [Mobiluncus mulieris
           FB024-16]
 gi|307614053|gb|EFN93297.1| transcription antitermination factor NusB [Mobiluncus mulieris
           FB024-16]
          Length = 197

 Score =  121 bits (304), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 33/140 (23%), Positives = 60/140 (42%), Gaps = 8/140 (5%)

Query: 14  HRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVII 73
             R  AR  AV  LY+  +     +  I      R   +TE   ++        + R I+
Sbjct: 6   PSRTRARSRAVDVLYEAHLKDLDDSAGIYSLAKLR---ETETTAQTPMP----PYAREIL 58

Query: 74  HGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCI 133
            GV +  + ID  +++  +  WS  R+  +  +I+R    E++    V   V I+  + +
Sbjct: 59  EGVAEHLERIDAALATY-SRAWSLHRMPEVDLAIMRVATWEILFNPDVDGPVAITAAMQL 117

Query: 134 AHDFFYGDEPKFINAVLDKV 153
           A +    + PKFIN +L  +
Sbjct: 118 AAERSTDESPKFINGLLGTI 137


>gi|229174859|ref|ZP_04302379.1| N utilization substance protein B [Bacillus cereus MM3]
 gi|228608527|gb|EEK65829.1| N utilization substance protein B [Bacillus cereus MM3]
          Length = 114

 Score =  121 bits (304), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 27/87 (31%), Positives = 45/87 (51%), Gaps = 1/87 (1%)

Query: 67  EWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVI 126
           ++   ++ G ++ K+ ID  I   L +KW   R+ ++  SILR  V E+     +P  V 
Sbjct: 25  DFLESLVVGFVENKEVIDEAIRQNL-KKWKLERISIVDRSILRVAVYEMKYMEEIPHNVT 83

Query: 127 ISEYVCIAHDFFYGDEPKFINAVLDKV 153
           I+E + IA  F   +  +FIN VL  +
Sbjct: 84  INEAIEIAKTFGDEESRRFINGVLSNI 110


>gi|219684900|ref|ZP_03539842.1| transcription antitermination factor NusB [Borrelia garinii PBr]
 gi|219671845|gb|EED28900.1| transcription antitermination factor NusB [Borrelia garinii PBr]
          Length = 145

 Score =  121 bits (304), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 38/143 (26%), Positives = 67/143 (46%), Gaps = 9/143 (6%)

Query: 17  GIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGV 76
              R+ A Q +Y IDI   +  +I   +       D  LD+E+  +     ++  +++G 
Sbjct: 5   HEVRVLAFQKIYSIDINQSAMDDIFDIFT----IEDKGLDIENESIK---SFYSSLVNGT 57

Query: 77  MDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECH-SVPVEVIISEYVCIAH 135
            +  ++ID LI   ++  WS  R+D +  +ILR GV  L   +       +I E + IA 
Sbjct: 58  FNNLEYIDNLIRD-ISWNWSLDRMDKVDLAILRMGVYSLKFQNFENSKRALIDEAILIAK 116

Query: 136 DFFYGDEPKFINAVLDKVSRKEE 158
            +   +  KFIN +LD + +  E
Sbjct: 117 KYGSKNSDKFINGILDALLKNME 139


>gi|283783379|ref|YP_003374133.1| transcription antitermination factor NusB [Gardnerella vaginalis
           409-05]
 gi|298252678|ref|ZP_06976472.1| transcription termination factor [Gardnerella vaginalis 5-1]
 gi|283441142|gb|ADB13608.1| transcription antitermination factor NusB [Gardnerella vaginalis
           409-05]
 gi|297533042|gb|EFH71926.1| transcription termination factor [Gardnerella vaginalis 5-1]
          Length = 160

 Score =  121 bits (304), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 32/144 (22%), Positives = 59/144 (40%), Gaps = 12/144 (8%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           R  AR  A+  LY+ D        ++ E              E        E+   I+ G
Sbjct: 3   RSTARKRALNTLYEADEKNQHILSLLEERVK-----------EPGAQTPLPEYAVEIVRG 51

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
           V +R+  ID  ++   +  W   R+ +I  +ILR  V E++    +P +V I E + +A 
Sbjct: 52  VGERRNRIDKTLNRY-STGWKVGRMAVIDRNILRIAVWEMLLNDEIPDKVAIDEAIALAK 110

Query: 136 DFFYGDEPKFINAVLDKVSRKEEI 159
            +   +   FI+ +L  +   ++ 
Sbjct: 111 MYSDDEAIAFIHGLLSAIMADKDA 134


>gi|269977328|ref|ZP_06184301.1| putative N utilization substance B-like protein [Mobiluncus
           mulieris 28-1]
 gi|269934631|gb|EEZ91192.1| putative N utilization substance B-like protein [Mobiluncus
           mulieris 28-1]
          Length = 197

 Score =  121 bits (304), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 33/140 (23%), Positives = 59/140 (42%), Gaps = 8/140 (5%)

Query: 14  HRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVII 73
             R  AR  AV  LY+  +     +  I      R   +TE   ++        + R I+
Sbjct: 6   PSRTRARSRAVDVLYEAHLKDLDDSAGIYSLAKLR---ETETTAQTPMP----PYAREIL 58

Query: 74  HGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCI 133
            GV +    ID  +++  +  WS  R+  +  +I+R    E++    V   V I+  + +
Sbjct: 59  EGVAEHLDRIDAALATY-SRAWSLHRMPEVDLAIMRVATWEILFNPDVDGPVAITAAMQL 117

Query: 134 AHDFFYGDEPKFINAVLDKV 153
           A +    + PKFIN +L  +
Sbjct: 118 AAERSTDESPKFINGLLGTI 137


>gi|237752651|ref|ZP_04583131.1| transcription termination protein [Helicobacter winghamensis ATCC
           BAA-430]
 gi|229376140|gb|EEO26231.1| transcription termination protein [Helicobacter winghamensis ATCC
           BAA-430]
          Length = 199

 Score =  121 bits (304), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 34/141 (24%), Positives = 63/141 (44%), Gaps = 13/141 (9%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           R  AR+A  Q LY         ++ + E  +           E    +   E+ + + +G
Sbjct: 4   RTHARVAVAQLLYAYGSGNDGISKFVEEILS-----------EHKIKNAQNEFAKTLFNG 52

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
           V++  + +DL I     + W F R+  +  +ILR G  E+I    +   ++I+E + I  
Sbjct: 53  VLEHLEEVDLRI-KHQIKNWDFERIGDMERAILRLGAYEIIFSG-MDKAIVINEALEITK 110

Query: 136 DFFYGDEPKFINAVLDKVSRK 156
           +F      KFIN +LD +++ 
Sbjct: 111 NFSNETSTKFINGILDGIAKN 131


>gi|224437825|ref|ZP_03658772.1| transcription antitermination protein NusB [Helicobacter cinaedi
           CCUG 18818]
 gi|313144273|ref|ZP_07806466.1| transcription antitermination protein NusB [Helicobacter cinaedi
           CCUG 18818]
 gi|313129304|gb|EFR46921.1| transcription antitermination protein NusB [Helicobacter cinaedi
           CCUG 18818]
          Length = 165

 Score =  121 bits (304), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 36/141 (25%), Positives = 61/141 (43%), Gaps = 14/141 (9%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           R  AR A +  LY  D+      +I       +   + + D           +  +++ G
Sbjct: 4   RTQAREAVIGMLYAYDLGNKDILDIARSMFEEKKIKNKQQD-----------FAFLLLQG 52

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
            +   Q ID  I   L E W FSRL  +  ++LR G  E++        V+I+E + +  
Sbjct: 53  AITNLQSIDEAIIPYLKE-WDFSRLGGMEKAVLRLGAYEILYT-DTDSPVVINEAIELGK 110

Query: 136 DFFYGD-EPKFINAVLDKVSR 155
            +   D  P+F+N VLD +S+
Sbjct: 111 MYGGEDNTPRFLNGVLDALSK 131


>gi|255994610|ref|ZP_05427745.1| transcription antitermination factor NusB [Eubacterium saphenum
           ATCC 49989]
 gi|255993323|gb|EEU03412.1| transcription antitermination factor NusB [Eubacterium saphenum
           ATCC 49989]
          Length = 135

 Score =  120 bits (303), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 31/142 (21%), Positives = 58/142 (40%), Gaps = 12/142 (8%)

Query: 15  RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74
            R  AR  A+Q ++QI +   +   ++ +  +       E             + R +  
Sbjct: 4   NRSKARTIAMQIIFQIPVHKTTDKVLVDKILSDYKNIGKEE-----------AYIREVFS 52

Query: 75  GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134
            V D    ID  +++ + + W+   +  +  +ILR  V E+     +P  V ++E V IA
Sbjct: 53  LVTDNIDAIDAELNAKM-KGWTIDSIPKVDLAILRLAVAEICYAKDIPKVVAVNEAVRIA 111

Query: 135 HDFFYGDEPKFINAVLDKVSRK 156
             F      KFIN +L  + + 
Sbjct: 112 KKFSDDKSAKFINGILANIGKD 133


>gi|325068837|ref|ZP_08127510.1| NusB antitermination factor [Actinomyces oris K20]
          Length = 163

 Score =  120 bits (303), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 28/138 (20%), Positives = 58/138 (42%), Gaps = 5/138 (3%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           R  AR  A++ L++ D  G  + E   E  ++         V S        + R I++G
Sbjct: 23  RTKARRRAIEILFEADQRGMLSDEGAEELRSFAQLR----AVSSANHTEAPAYTREILNG 78

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
           V D    +D  I +   + W+  R+  +  +I R    E++    V   V + E + ++ 
Sbjct: 79  VCDHLDDVDETIQTY-AQGWTLGRMPAVDRAIARVATWEIVYNDEVDAPVAVDEAMTLSR 137

Query: 136 DFFYGDEPKFINAVLDKV 153
                + P+++  +L ++
Sbjct: 138 MLSTDESPRYLGGLLGRI 155


>gi|254373311|ref|ZP_04988799.1| N utilisation substance protein B [Francisella tularensis subsp.
           novicida GA99-3549]
 gi|254374776|ref|ZP_04990257.1| N utilization substance protein B [Francisella novicida GA99-3548]
 gi|151571037|gb|EDN36691.1| N utilisation substance protein B [Francisella novicida GA99-3549]
 gi|151572495|gb|EDN38149.1| N utilization substance protein B [Francisella novicida GA99-3548]
          Length = 141

 Score =  120 bits (303), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 44/153 (28%), Positives = 69/153 (45%), Gaps = 13/153 (8%)

Query: 10  LKLSHR-RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEW 68
           +K + R R  ARL AVQALYQ  I   + +E+  +Y              +   + D + 
Sbjct: 1   MKTTARARNNARLYAVQALYQKKIADNTFSELKVQYYA----------DNADRHYTDWDL 50

Query: 69  FRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIIS 128
           F  +I  V   +  ID  I            ++ +  ++L+  + ELIEC   P +VII 
Sbjct: 51  FYRLIDAVKTNQDTIDKYIKENSNNG--VESINYVDYAVLQVAIAELIECLENPYQVIIK 108

Query: 129 EYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKR 161
           EYV I +     +  KFINAVL  +++    + 
Sbjct: 109 EYVEICYSMGTEEGYKFINAVLQNLAKSIRGEE 141


>gi|114800202|ref|YP_760752.1| transcription antitermination factor NusB [Hyphomonas neptunium
           ATCC 15444]
 gi|119390777|sp|Q0C0J1|NUSB_HYPNA RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|114740376|gb|ABI78501.1| transcription antitermination factor NusB [Hyphomonas neptunium
           ATCC 15444]
          Length = 154

 Score =  120 bits (303), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 45/136 (33%), Positives = 68/136 (50%), Gaps = 3/136 (2%)

Query: 24  VQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHI 83
           VQALY+++    S    I E+   R     +          D + F+ I++ V++ +  I
Sbjct: 22  VQALYEMEQTEKSARATIREFMEDRLGLGPDGTPVE---DADPDLFKSIVNSVVEHQAKI 78

Query: 84  DLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEP 143
           D  I + L E W  +RLD  + ++LRAG  E I    +   +I+SEYV +AHDFF   + 
Sbjct: 79  DTAILARLAEGWKLTRLDATMRALLRAGAAEFIAHQELSDAIILSEYVSLAHDFFDEGDA 138

Query: 144 KFINAVLDKVSRKEEI 159
           KF NAVL  + R    
Sbjct: 139 KFANAVLQNMGRDLRA 154


>gi|297243390|ref|ZP_06927323.1| transcription termination factor [Gardnerella vaginalis AMD]
 gi|296888637|gb|EFH27376.1| transcription termination factor [Gardnerella vaginalis AMD]
          Length = 160

 Score =  120 bits (303), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 32/144 (22%), Positives = 59/144 (40%), Gaps = 12/144 (8%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           R  AR  A+  LY+ D        ++ E              E        E+   I+ G
Sbjct: 3   RSTARKRALNTLYEADEKNQHILSLLEERVK-----------EPGAQTPLPEYAIEIVRG 51

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
           V +R+  ID  ++   +  W   R+ +I  +ILR  V E++    +P +V I E + +A 
Sbjct: 52  VGERRNRIDKTLNRY-STGWKVGRMAVIDRNILRIAVWEMLLNDEIPDKVAIDEAIALAK 110

Query: 136 DFFYGDEPKFINAVLDKVSRKEEI 159
            +   +   FI+ +L  +   ++ 
Sbjct: 111 MYSDDEAIAFIHGLLSAIMADKDA 134


>gi|189184153|ref|YP_001937938.1| transcription antitermination protein NusB [Orientia tsutsugamushi
           str. Ikeda]
 gi|189180924|dbj|BAG40704.1| N utilization substance protein B [Orientia tsutsugamushi str.
           Ikeda]
          Length = 162

 Score =  120 bits (303), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 46/147 (31%), Positives = 75/147 (51%), Gaps = 6/147 (4%)

Query: 14  HRRGIARLAAVQALYQIDIIGCSTTE------IISEYETYRFCADTELDVESVYLHVDLE 67
           + + I R+A++Q +Y   I+    T       II+ Y+      D ELD       +   
Sbjct: 9   NTKTITRIASIQGVYSYQILDSEPTIDSIIDFIITYYKDKSSLEDLELDSAIPCFKLRTN 68

Query: 68  WFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVII 127
           +   +++  +D  + ID++ISS L + W    L +IL SILR    EL    S P +V+I
Sbjct: 69  YLTKLVNETIDNLETIDMIISSYLADNWQIKDLHLILLSILRVATCELKFFTSTPYKVVI 128

Query: 128 SEYVCIAHDFFYGDEPKFINAVLDKVS 154
           +E+  IA DF    E  F+N++L+K+S
Sbjct: 129 NEFTNIASDFVKDSEIGFVNSLLEKIS 155


>gi|295093397|emb|CBK82488.1| transcription antitermination factor NusB [Coprococcus sp. ART55/1]
          Length = 159

 Score =  120 bits (303), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 35/158 (22%), Positives = 69/158 (43%), Gaps = 4/158 (2%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVY---LHVDLEWFRVI 72
           R   R    + ++ ++       +   ++         E D   +Y    + D ++    
Sbjct: 3   RRDIRDRIFKIVFTLEFNDAEGMQDQLDFAFDPEMPGDEEDDPLLYGIVSNEDRDYITTK 62

Query: 73  IHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVC 132
           +  ++ +K  ID +IS  ++E W   R+     +ILR GV E+    S+P +V I+E V 
Sbjct: 63  VKNIISKKAEIDEIISQ-ISEGWKLPRIGKEELAILRLGVYEVKYDESIPEKVAINEAVE 121

Query: 133 IAHDFFYGDEPKFINAVLDKVSRKEEIKRSGCVSAITQ 170
           +A  +      KF+NA+L K+   ++ K+     A  +
Sbjct: 122 LAKKYCDASASKFVNALLAKLVSGDKDKKESGADATAE 159


>gi|160902466|ref|YP_001568047.1| NusB antitermination factor [Petrotoga mobilis SJ95]
 gi|160360110|gb|ABX31724.1| NusB antitermination factor [Petrotoga mobilis SJ95]
          Length = 151

 Score =  120 bits (303), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 38/157 (24%), Positives = 71/157 (45%), Gaps = 10/157 (6%)

Query: 1   MTIQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESV 60
           MT +  + +  +  +R + R    ++L+Q+ I       I+  +E     A  E   ES 
Sbjct: 1   MTNKRTRMNENIPKKRMM-RKLIFESLFQLSIKDVKLDNILFTFEKLNEQAHLE---ESY 56

Query: 61  YLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHS 120
           YL       +  I  +   K   D LI+   +E W   R+  I  +++R  + ELI    
Sbjct: 57  YLEA-----KQYIEDIYKNKNEYDALINKY-SEGWRVERIGNIEKTVMRIFIYELINKKD 110

Query: 121 VPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKE 157
           +PV+VI++E   +   +       F+N ++DK++R +
Sbjct: 111 IPVKVILNESTELTKTYATQKAAAFVNGIMDKIARSQ 147


>gi|309810676|ref|ZP_07704484.1| transcription antitermination factor NusB [Dermacoccus sp.
           Ellin185]
 gi|308435307|gb|EFP59131.1| transcription antitermination factor NusB [Dermacoccus sp.
           Ellin185]
          Length = 138

 Score =  120 bits (302), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 30/139 (21%), Positives = 61/139 (43%), Gaps = 12/139 (8%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           R  AR  A+  L++ +    +  +++ E             +  V      E+  V++ G
Sbjct: 4   RTKARKRALDLLFEAEQREINAKDLLDERV-----------LAPVTPAPLPEYTAVLVRG 52

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
           V+D  + I+  + +     W+  R+  +  ++LR    E++    VP  V +SE   +A 
Sbjct: 53  VVDHWRTINEALETY-ARGWTLDRMPAVDRALLRVAAYEVLYVDDVPDGVAVSEAKNLAT 111

Query: 136 DFFYGDEPKFINAVLDKVS 154
           +    + P+FI  +L K+S
Sbjct: 112 ELSTDNSPQFIGGLLTKLS 130


>gi|270290385|ref|ZP_06196610.1| transcription antitermination factor NusB [Pediococcus acidilactici
           7_4]
 gi|270281166|gb|EFA26999.1| transcription antitermination factor NusB [Pediococcus acidilactici
           7_4]
          Length = 134

 Score =  120 bits (302), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 32/145 (22%), Positives = 56/145 (38%), Gaps = 11/145 (7%)

Query: 12  LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71
           +S  R   R +A + ++   +   +  E + +     F      D           +   
Sbjct: 1   MSLNRHQMRESAFKMIFAQSVNPDADPEELKKQVLEEFHETDVAD----------PFLDN 50

Query: 72  IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
           ++ GV +    I+  I   L   W+ +RL      IL+ G  E+     VP  V I+E +
Sbjct: 51  LVTGVQENVSSINETIGKELKAGWTVNRLANPDRVILQIGTYEIKHT-EVPNNVAINEAL 109

Query: 132 CIAHDFFYGDEPKFINAVLDKVSRK 156
            +A  +      KFIN VL  V++ 
Sbjct: 110 ELAKKYTDEKARKFINGVLSNVAKD 134


>gi|118497958|ref|YP_899008.1| transcription termination factor [Francisella tularensis subsp.
           novicida U112]
 gi|194323181|ref|ZP_03056965.1| transcription antitermination factor NusB [Francisella tularensis
           subsp. novicida FTE]
 gi|118423864|gb|ABK90254.1| transcription termination factor [Francisella novicida U112]
 gi|194322545|gb|EDX20025.1| transcription antitermination factor NusB [Francisella tularensis
           subsp. novicida FTE]
          Length = 141

 Score =  120 bits (302), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 44/153 (28%), Positives = 69/153 (45%), Gaps = 13/153 (8%)

Query: 10  LKLSHR-RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEW 68
           +K + R R  ARL AVQALYQ  I   + +E+  +Y              +   + D + 
Sbjct: 1   MKTTARARNNARLYAVQALYQKKIADNTFSELKIQYYA----------DNADRHYTDWDL 50

Query: 69  FRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIIS 128
           F  +I  V   +  ID  I            ++ +  ++L+  + ELIEC   P +VII 
Sbjct: 51  FYRLIDAVKTNQDTIDKYIKENSNNG--VESINYVDYAVLQVAIAELIECLENPYQVIIK 108

Query: 129 EYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKR 161
           EYV I +     +  KFINAVL  +++    + 
Sbjct: 109 EYVEICYSMGTEEGYKFINAVLQNLAKSIRGEE 141


>gi|124005043|ref|ZP_01689885.1| NusB antitermination factor [Microscilla marina ATCC 23134]
 gi|123989295|gb|EAY28856.1| NusB antitermination factor [Microscilla marina ATCC 23134]
          Length = 462

 Score =  120 bits (302), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 40/160 (25%), Positives = 79/160 (49%), Gaps = 6/160 (3%)

Query: 9   DLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEW 68
           DL  S  R + +  AV+ +  I +      +  +E        + EL   S     D+ +
Sbjct: 299 DLSWSENRKVVQSMAVKTIKAI-MGDTEEEDGDAEETEITINKNFELSPLSKNWDEDVVF 357

Query: 69  FRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIIS 128
           ++ + +  ++  Q  + +I+   T+ W   RL +I   IL+  + E+I  +S+PV+V I+
Sbjct: 358 YKNLYNFNVEGNQRYEDIIAKK-TKNWDIERLALIDKVILKMAICEMINFYSIPVKVTIN 416

Query: 129 EYVCIAHDFFYGDEPKFINAVLDKVSR----KEEIKRSGC 164
           EY+ +A  +      KF+N +LD +++    + +IK+SG 
Sbjct: 417 EYIELAKTYSTPKSKKFVNGLLDSIAQDLIEQGDIKKSGR 456


>gi|148284859|ref|YP_001248949.1| transcription antitermination protein NusB [Orientia tsutsugamushi
           str. Boryong]
 gi|146740298|emb|CAM80679.1| N utilization substance protein B [Orientia tsutsugamushi str.
           Boryong]
          Length = 162

 Score =  120 bits (301), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 46/147 (31%), Positives = 75/147 (51%), Gaps = 6/147 (4%)

Query: 14  HRRGIARLAAVQALYQIDIIGCSTTE------IISEYETYRFCADTELDVESVYLHVDLE 67
           + + I R+A++Q +Y   I+    T       II+ Y+      D ELD       +   
Sbjct: 9   NTKTITRIASIQGVYSYQILDSEPTIDSIIDFIITYYKDKSSLEDLELDSAIPCFKLRTN 68

Query: 68  WFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVII 127
           +   +++  +D  + ID++ISS L + W    L +IL SILR    EL    S P +V+I
Sbjct: 69  YLTKLVNETIDNLETIDMIISSYLADNWQIKDLHLILLSILRVATCELKFFTSTPYKVVI 128

Query: 128 SEYVCIAHDFFYGDEPKFINAVLDKVS 154
           +E+  IA DF    E  F+N++L+K+S
Sbjct: 129 NEFTNIASDFVKESEIGFVNSLLEKIS 155


>gi|208779634|ref|ZP_03246979.1| transcription antitermination factor NusB [Francisella novicida
           FTG]
 gi|208744595|gb|EDZ90894.1| transcription antitermination factor NusB [Francisella novicida
           FTG]
          Length = 141

 Score =  120 bits (301), Expect = 8e-26,   Method: Composition-based stats.
 Identities = 44/153 (28%), Positives = 69/153 (45%), Gaps = 13/153 (8%)

Query: 10  LKLSHR-RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEW 68
           +K + R R  ARL AVQALYQ  I   + +E+  +Y              +   + D + 
Sbjct: 1   MKTTARARNNARLYAVQALYQKKIADNTFSELKIQYYA----------DNADRHYTDWDL 50

Query: 69  FRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIIS 128
           F  +I  V   +  ID  I            ++ +  ++L+  + ELIEC   P +VII 
Sbjct: 51  FYRLIDAVKTNQDTIDKYIKENSNNG--VESINYVDYAVLQVAIAELIECFENPYQVIIK 108

Query: 129 EYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKR 161
           EYV I +     +  KFINAVL  +++    + 
Sbjct: 109 EYVEICYSMGTEEGYKFINAVLQNLAKSIRGEE 141


>gi|42520134|ref|NP_966049.1| N utilization substance protein B, putative [Wolbachia endosymbiont
           of Drosophila melanogaster]
 gi|58698971|ref|ZP_00373826.1| transcription antitermination factor NusB [Wolbachia endosymbiont
           of Drosophila ananassae]
 gi|225630058|ref|YP_002726849.1| N utilization substance protein B, putative [Wolbachia sp. wRi]
 gi|42409871|gb|AAS13983.1| N utilization substance protein B, putative [Wolbachia endosymbiont
           of Drosophila melanogaster]
 gi|58534511|gb|EAL58655.1| transcription antitermination factor NusB [Wolbachia endosymbiont
           of Drosophila ananassae]
 gi|225592039|gb|ACN95058.1| N utilization substance protein B, putative [Wolbachia sp. wRi]
          Length = 160

 Score =  120 bits (301), Expect = 8e-26,   Method: Composition-based stats.
 Identities = 46/161 (28%), Positives = 75/161 (46%), Gaps = 3/161 (1%)

Query: 3   IQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYL 62
           +++   D K   +R  AR  AVQ  Y    +G + +    E    +   +   D+     
Sbjct: 1   MEEKPVDKKWRIKRSTARFLAVQIAYSNIFVGYNKSTFKLENCELKDYINKLKDIFECE- 59

Query: 63  HVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVP 122
             + ++   +++ V+   +  D +I S L   WS SRL++I  SILR  + EL  C   P
Sbjct: 60  EFEHQFLENLLYKVIKSSEEYDKIIESYLHPSWSLSRLNLISLSILRVAICELANC-DTP 118

Query: 123 VEVIISEYVCIAHDFFY-GDEPKFINAVLDKVSRKEEIKRS 162
           V V+I+EY  IA D      E  FIN +LDK     ++ ++
Sbjct: 119 VPVVINEYTNIASDLLDKPSEIGFINGLLDKAKDAVKLNKN 159


>gi|317132176|ref|YP_004091490.1| NusB antitermination factor [Ethanoligenens harbinense YUAN-3]
 gi|315470155|gb|ADU26759.1| NusB antitermination factor [Ethanoligenens harbinense YUAN-3]
          Length = 136

 Score =  120 bits (301), Expect = 8e-26,   Method: Composition-based stats.
 Identities = 34/144 (23%), Positives = 61/144 (42%), Gaps = 13/144 (9%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           R  AR  A+  +++      + +EI+            +L V++    +   +  ++  G
Sbjct: 3   RREAREQALCLVFEGLFKEENVSEIL------------DLAVQAREEFLVDTFAEMLATG 50

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
           V D +  ID  I       W+ SRL  ++ ++LR    EL+     P  V I+E V +A 
Sbjct: 51  VYDHRDDIDRKIEQY-AIGWTKSRLSRVVLTVLRIAFFELLYEQDTPDSVAINEAVELAK 109

Query: 136 DFFYGDEPKFINAVLDKVSRKEEI 159
            +    +  F+N VL    R E+ 
Sbjct: 110 KYGGDGDSAFVNGVLGAFVRAEKA 133


>gi|317013425|gb|ADU80861.1| transcription antitermination protein NusB [Helicobacter pylori
           Gambia94/24]
          Length = 138

 Score =  120 bits (301), Expect = 9e-26,   Method: Composition-based stats.
 Identities = 40/146 (27%), Positives = 66/146 (45%), Gaps = 13/146 (8%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           R  AR A V+ LY  +       +I S     +   + +L            +   + +G
Sbjct: 4   RTQARGAVVELLYAFESGNEEIKKIASSMLEEKKIKNNQL-----------AFALSLFNG 52

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
           V++R   ID LI   L + W F RL  +  +ILR G  E+         +II+E + +  
Sbjct: 53  VLERINEIDALIEPHL-KDWDFKRLGSMEKAILRLGAYEIGFTP-TQNPIIINECIELGK 110

Query: 136 DFFYGDEPKFINAVLDKVSRKEEIKR 161
            +   + PKF+NA+LD +S+K + K 
Sbjct: 111 LYAEPNTPKFLNAILDSLSKKLDQKP 136


>gi|291296745|ref|YP_003508143.1| NusB antitermination factor [Meiothermus ruber DSM 1279]
 gi|290471704|gb|ADD29123.1| NusB antitermination factor [Meiothermus ruber DSM 1279]
          Length = 152

 Score =  120 bits (301), Expect = 9e-26,   Method: Composition-based stats.
 Identities = 37/155 (23%), Positives = 72/155 (46%), Gaps = 6/155 (3%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           R  AR  A + L++  + G    E   ++ T     +       V  H  L + + ++ G
Sbjct: 2   RRKARELAFKVLFEHAVGGVPL-EAAWQHATQEVEPEEADQEADVLDHEGLLFAQRLVQG 60

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
              ++Q +D  ++S + E WSFS++     ++LR    E++     P   +I   V IA 
Sbjct: 61  YAAQQQTVDEALASTI-EGWSFSQMAKTDLAVLRLATYEMLFEP-TPYAPLIEVAVKIAK 118

Query: 136 DFFYGDEPKFINAVLDKVSRKEEIKRSGCVSAITQ 170
            +   D  +F+N VL ++ ++ E   +G +SA+ +
Sbjct: 119 RYGGEDSGRFVNGVLARLLKRIE---AGELSAVAK 150


>gi|295100829|emb|CBK98374.1| transcription antitermination factor NusB [Faecalibacterium
           prausnitzii L2-6]
          Length = 144

 Score =  119 bits (300), Expect = 9e-26,   Method: Composition-based stats.
 Identities = 29/142 (20%), Positives = 59/142 (41%), Gaps = 13/142 (9%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           R  AR  A    +          E +  +       D E  V+         + + ++  
Sbjct: 7   RREARENAFLLAFSQTFGDIPLQEALDNHHEC----DEEHPVDV--------FGQRLLRA 54

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
             +    +D LIS+ L   W+  RL  +  ++LR G+ E++        V+I+E V +  
Sbjct: 55  YYEHSAEVDDLISAHL-RNWTMERLPRVSLTVLRLGLAEMLYGDEKKPGVVINEAVELTK 113

Query: 136 DFFYGDEPKFINAVLDKVSRKE 157
            +   ++ +F+N +L  V+R++
Sbjct: 114 KYGADEDYQFVNGLLGTVAREQ 135


>gi|317176809|dbj|BAJ54598.1| transcription antitermination protein NusB [Helicobacter pylori
           F16]
          Length = 138

 Score =  119 bits (300), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 39/146 (26%), Positives = 65/146 (44%), Gaps = 13/146 (8%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           R  AR A V+ LY  +       +I S     +   + +L            +   + +G
Sbjct: 4   RTQARGAVVELLYAFESGNEEIKKIASSMLEEKKIKNNQL-----------AFALSLFNG 52

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
           V+++   ID LI   L + W F RL  +  +ILR G  E+         +II+E + +  
Sbjct: 53  VLEKLNEIDALIEPHL-KDWDFKRLGSMEKAILRLGTYEIGFTP-TQNPIIINECIELGK 110

Query: 136 DFFYGDEPKFINAVLDKVSRKEEIKR 161
            +   + PKF+NA+LD +S+K   K 
Sbjct: 111 LYAEPNTPKFLNAILDSLSKKLTQKP 136


>gi|89256034|ref|YP_513396.1| N utilisation substance protein B [Francisella tularensis subsp.
           holarctica LVS]
 gi|115314512|ref|YP_763235.1| N utilization substance protein B [Francisella tularensis subsp.
           holarctica OSU18]
 gi|156502045|ref|YP_001428109.1| transcription antitermination factor [Francisella tularensis subsp.
           holarctica FTNF002-00]
 gi|167010215|ref|ZP_02275146.1| transcription antitermination factor NusB [Francisella tularensis
           subsp. holarctica FSC200]
 gi|254367376|ref|ZP_04983402.1| N utilisation substance protein B [Francisella tularensis subsp.
           holarctica 257]
 gi|290953937|ref|ZP_06558558.1| transcription antitermination factor [Francisella tularensis subsp.
           holarctica URFT1]
 gi|295312686|ref|ZP_06803431.1| transcription antitermination factor [Francisella tularensis subsp.
           holarctica URFT1]
 gi|89143865|emb|CAJ79083.1| N utilisation substance protein B [Francisella tularensis subsp.
           holarctica LVS]
 gi|115129411|gb|ABI82598.1| N utilization substance protein B [Francisella tularensis subsp.
           holarctica OSU18]
 gi|134253192|gb|EBA52286.1| N utilisation substance protein B [Francisella tularensis subsp.
           holarctica 257]
 gi|156252648|gb|ABU61154.1| transcription antitermination factor [Francisella tularensis subsp.
           holarctica FTNF002-00]
          Length = 141

 Score =  119 bits (300), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 44/153 (28%), Positives = 69/153 (45%), Gaps = 13/153 (8%)

Query: 10  LKLSHR-RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEW 68
           +K + R R  ARL AVQALYQ  I   + +E+  +Y              +   + D + 
Sbjct: 1   MKTTARARNNARLYAVQALYQKKIADNTFSELKIQYYA----------DNADRHYTDWDL 50

Query: 69  FRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIIS 128
           F  +I  V   +  ID  I    +       ++ +   +L+  + ELIEC   P +VII 
Sbjct: 51  FYRLIDAVKTNQDTIDKYIKENSSNG--VESINYVDYVVLQVAIAELIECLENPYQVIIK 108

Query: 129 EYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKR 161
           EYV I +     +  KFINAVL  +++    + 
Sbjct: 109 EYVEICYSMGTEEGYKFINAVLQNLAKSIRSEE 141


>gi|187931389|ref|YP_001891373.1| transcription antitermination factor NusB [Francisella tularensis
           subsp. mediasiatica FSC147]
 gi|187712298|gb|ACD30595.1| transcription antitermination factor NusB [Francisella tularensis
           subsp. mediasiatica FSC147]
          Length = 141

 Score =  119 bits (299), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 44/153 (28%), Positives = 70/153 (45%), Gaps = 13/153 (8%)

Query: 10  LKLSHR-RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEW 68
           +K + R R  ARL AVQALYQ  I   + +E+  +Y              +   + D + 
Sbjct: 1   MKTTARARNNARLYAVQALYQKKIADNTFSELKIQYYA----------DNADRHYTDWDL 50

Query: 69  FRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIIS 128
           F  +I  V   +  ID  I    +       ++ +  ++L+  + ELIEC   P +VII 
Sbjct: 51  FYRLIDAVKTNQDTIDKYIKENSSNG--VESINYVDYAVLQVAIAELIECLENPYQVIIK 108

Query: 129 EYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKR 161
           EYV I +     +  KFINAVL  +++    + 
Sbjct: 109 EYVGICYSMGTEEGYKFINAVLQNLAKSIRGEE 141


>gi|295397759|ref|ZP_06807828.1| transcription antitermination factor NusB [Aerococcus viridans ATCC
           11563]
 gi|294973971|gb|EFG49729.1| transcription antitermination factor NusB [Aerococcus viridans ATCC
           11563]
          Length = 217

 Score =  119 bits (299), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 29/104 (27%), Positives = 50/104 (48%), Gaps = 2/104 (1%)

Query: 67  EWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHS--VPVE 124
            + R ++ GV   +  ID +I + +   WS  RL+++   ILR  V EL+      VP  
Sbjct: 92  AYLRTLVEGVKANRFEIDQMIDNHIHGNWSVQRLELVNLQILRVAVFELLFTDEETVPRV 151

Query: 125 VIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRSGCVSAI 168
           V ++E + +A  +      KFIN +L  V  + +   +G V  +
Sbjct: 152 VAVNEAIELAKLYSDDRARKFINGILSNVLAELKANANGDVKPV 195


>gi|83816060|ref|YP_444173.1| transcription antitermination factor NusB [Salinibacter ruber DSM
           13855]
 gi|294505831|ref|YP_003569889.1| N utilization substance protein B homolog [Salinibacter ruber M8]
 gi|119390817|sp|Q2S6K8|NUSB_SALRD RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|83757454|gb|ABC45567.1| transcription antitermination factor NusB [Salinibacter ruber DSM
           13855]
 gi|294342159|emb|CBH22937.1| N utilization substance protein B homolog [Salinibacter ruber M8]
          Length = 160

 Score =  119 bits (299), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 26/140 (18%), Positives = 49/140 (35%), Gaps = 11/140 (7%)

Query: 14  HRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVII 73
             R  AR   ++ LY  +       + +          D              ++   + 
Sbjct: 2   SSRRDAREQVMKTLYANEQTDGDAEQALHALVRVPLDEDPSTR----------DFAEHLF 51

Query: 74  HGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCI 133
              +   +  D +I     + W   R+  I  S+LR    EL++   VP +V + E + I
Sbjct: 52  RETLKTMEEADEIIEKH-ADNWEIHRIAAIDRSLLRMATTELLKFEEVPPKVSVDEAIEI 110

Query: 134 AHDFFYGDEPKFINAVLDKV 153
           A  +       F+N V+D +
Sbjct: 111 AKRYSTPRSGTFVNGVIDAI 130


>gi|308183797|ref|YP_003927930.1| transcription antitermination protein NusB [Helicobacter pylori
           SJM180]
 gi|308059717|gb|ADO01613.1| transcription antitermination protein NusB [Helicobacter pylori
           SJM180]
          Length = 138

 Score =  119 bits (299), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 39/146 (26%), Positives = 65/146 (44%), Gaps = 13/146 (8%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           R  AR A V+ LY  +       +I S     +   + +L            +   + +G
Sbjct: 4   RTQARGAVVELLYAFESGNEGIKKIASSMLEEKKIKNNQL-----------AFALSLFNG 52

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
           V+++   ID LI   L + W F RL  +  +ILR G  E+         +II+E + +  
Sbjct: 53  VLEKINEIDALIEPHL-KDWDFKRLGSMEKAILRLGAYEIGFTP-TQNPIIINECIELGK 110

Query: 136 DFFYGDEPKFINAVLDKVSRKEEIKR 161
            +   + PKF+NA+LD +S+K   K 
Sbjct: 111 LYAEPNTPKFLNAILDSLSKKLAQKP 136


>gi|310779261|ref|YP_003967594.1| NusB antitermination factor [Ilyobacter polytropus DSM 2926]
 gi|309748584|gb|ADO83246.1| NusB antitermination factor [Ilyobacter polytropus DSM 2926]
          Length = 132

 Score =  119 bits (299), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 31/141 (21%), Positives = 61/141 (43%), Gaps = 11/141 (7%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           R  AR    + L++ ++     TE++ ++ +           +        E+     +G
Sbjct: 3   RKTAREEFFKLLFEAELNEVDATEVLEDFIS---------RDDFKLSKAGQEFLERYANG 53

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
           V + K  I   I   +T  W+  R+  +  ++L+    EL++   V  E++I+E V +A 
Sbjct: 54  VTENKAEIQRTIDENMT-GWTLDRIGNVERTLLKFATYELLK-EDVGYEIVINEIVELAK 111

Query: 136 DFFYGDEPKFINAVLDKVSRK 156
            +      +FIN VL K+  K
Sbjct: 112 KYGEEKSHEFINGVLAKIVNK 132


>gi|320534351|ref|ZP_08034838.1| transcription antitermination factor NusB [Actinomyces sp. oral
           taxon 171 str. F0337]
 gi|320133433|gb|EFW25894.1| transcription antitermination factor NusB [Actinomyces sp. oral
           taxon 171 str. F0337]
          Length = 163

 Score =  119 bits (299), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 30/139 (21%), Positives = 62/139 (44%), Gaps = 7/139 (5%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLE-WFRVIIH 74
           R  AR  A++ L++ D  G  ++E   E  ++      +L   S   H +   + R I++
Sbjct: 23  RTKARRRAIEILFEADQRGMLSSEGTEELRSFA-----QLRAVSSANHTEAPLYTREILN 77

Query: 75  GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134
           GV D    ID  I +   + W+  R+  +  +I R    E++    V   V + E + ++
Sbjct: 78  GVCDHLADIDETIQTY-AQGWTLGRMPAVDRAIARVATWEIVYNDDVDAPVGVDEAMTLS 136

Query: 135 HDFFYGDEPKFINAVLDKV 153
                 + P+++  +L ++
Sbjct: 137 RMLSTDESPRYLGGLLGRI 155


>gi|167750987|ref|ZP_02423114.1| hypothetical protein EUBSIR_01972 [Eubacterium siraeum DSM 15702]
 gi|167656166|gb|EDS00296.1| hypothetical protein EUBSIR_01972 [Eubacterium siraeum DSM 15702]
 gi|291557466|emb|CBL34583.1| transcription antitermination factor NusB [Eubacterium siraeum
           V10Sc8a]
          Length = 143

 Score =  119 bits (299), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 34/147 (23%), Positives = 66/147 (44%), Gaps = 14/147 (9%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           R   R AA+  L+Q+ +   +  EI+   E  +   + E + +SV           +  G
Sbjct: 8   RHEMREAALLILFQMKLNPETLDEIL---EDCKESFEMEYNSQSV----------KLAKG 54

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
           V + +  ++ +I S  +      R+  I  +I++  + E+  C SVP +V I+E +  A 
Sbjct: 55  VAEHEDELNGIIESY-SPSRKLDRISYINLAIMKIALYEMKYCPSVPDKVAINEAIEFAK 113

Query: 136 DFFYGDEPKFINAVLDKVSRKEEIKRS 162
           ++    + +FIN VL+   +    K  
Sbjct: 114 EYADKTDVRFINGVLNSYYKDNPTKEQ 140


>gi|329946651|ref|ZP_08294063.1| transcription antitermination factor NusB [Actinomyces sp. oral
           taxon 170 str. F0386]
 gi|328526462|gb|EGF53475.1| transcription antitermination factor NusB [Actinomyces sp. oral
           taxon 170 str. F0386]
          Length = 163

 Score =  119 bits (298), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 27/138 (19%), Positives = 56/138 (40%), Gaps = 5/138 (3%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           R  AR  A++ L++ D  G   +    E  ++         V S        + R I+ G
Sbjct: 23  RTKARRRAIEILFEADQRGMLISGDAEELRSFAQLR----AVSSANHTEAPAYTREILDG 78

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
           V D    +D  I +   + W+  R+  +  +I R    E++    V   V + E + ++ 
Sbjct: 79  VCDHLADVDETIQTY-AQGWTLGRMPAVDRAIARVATWEIVYNDDVDAPVAVDEAMTLSR 137

Query: 136 DFFYGDEPKFINAVLDKV 153
                + P+++  +L ++
Sbjct: 138 MLSTDESPRYLGGLLGRI 155


>gi|125624663|ref|YP_001033146.1| transcription termination protein nusB [Lactococcus lactis subsp.
           cremoris MG1363]
 gi|124493471|emb|CAL98448.1| transcription termination protein nusB [Lactococcus lactis subsp.
           cremoris MG1363]
 gi|300071455|gb|ADJ60855.1| transcription termination protein nusB [Lactococcus lactis subsp.
           cremoris NZ9000]
          Length = 325

 Score =  119 bits (298), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 30/129 (23%), Positives = 61/129 (47%), Gaps = 1/129 (0%)

Query: 29  QIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLIS 88
           Q+     +    +S+            D +        E+F  ++ GV+++K+ +++ IS
Sbjct: 198 QLQQAETTAESHLSDLLKETKHFVLNYDNDRAEDLEAPEYFTQLVDGVLEKKEDLEINIS 257

Query: 89  SCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINA 148
             L + WSFSRL ++  +IL+    E++     P  V ++E + ++ DF      +FIN 
Sbjct: 258 KYLAKNWSFSRLTLVEQAILQVSTYEILFT-DTPNVVAVNEAIELSKDFSDEKSSRFING 316

Query: 149 VLDKVSRKE 157
           VL    +++
Sbjct: 317 VLTNFLKED 325


>gi|163816787|ref|ZP_02208150.1| hypothetical protein COPEUT_02977 [Coprococcus eutactus ATCC 27759]
 gi|158448044|gb|EDP25039.1| hypothetical protein COPEUT_02977 [Coprococcus eutactus ATCC 27759]
          Length = 153

 Score =  119 bits (298), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 39/153 (25%), Positives = 67/153 (43%), Gaps = 10/153 (6%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYL------HVDLEWF 69
           R   R    + ++  +     T E + E     F  +   D E   +        D E+ 
Sbjct: 3   RREIRDKIFKIVFTAEFN---TQEEMKEQLELAFDTEMPGDEEDDPMLYASVSEKDKEYI 59

Query: 70  RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISE 129
              +  ++  K  ID  IS  ++E W   R+     +ILR GV E++   ++P +V I+E
Sbjct: 60  TDKVMDILAHKDAIDNTISE-ISEGWKLPRIGKEELAILRLGVYEVVYDETIPEKVAINE 118

Query: 130 YVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRS 162
            V +A  +      KF+NA+L K+ +KEE   +
Sbjct: 119 AVELAKKYCDVSASKFVNALLAKLVKKEESGNA 151


>gi|326329789|ref|ZP_08196109.1| transcription antitermination factor NusB [Nocardioidaceae
           bacterium Broad-1]
 gi|325952375|gb|EGD44395.1| transcription antitermination factor NusB [Nocardioidaceae
           bacterium Broad-1]
          Length = 137

 Score =  119 bits (298), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 36/144 (25%), Positives = 64/144 (44%), Gaps = 15/144 (10%)

Query: 13  SHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVI 72
           +  R  AR  A+  L+  +  G S  +++ +        +               +   I
Sbjct: 5   ATARTKARKRALDLLFAAEARGLSAGDLLDQQIREGEVPNN-------------PFTVKI 51

Query: 73  IHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVC 132
           + GV+   + ID LIS+   + W+ +R+  +  ++LR GV EL++   V  EV ISE   
Sbjct: 52  VRGVVAEAERIDALISAF-AKDWTLARMPAVDRNVLRIGVWELLDG-DVASEVAISEATA 109

Query: 133 IAHDFFYGDEPKFINAVLDKVSRK 156
           +  +    D P F+N VL  V++ 
Sbjct: 110 LVTELSTDDSPSFVNGVLAAVAKD 133


>gi|259507351|ref|ZP_05750251.1| N utilization substance protein B family protein (protein NusB)
           [Corynebacterium efficiens YS-314]
 gi|259165062|gb|EEW49616.1| N utilization substance protein B family protein (protein NusB)
           [Corynebacterium efficiens YS-314]
          Length = 167

 Score =  119 bits (298), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 34/144 (23%), Positives = 59/144 (40%), Gaps = 7/144 (4%)

Query: 24  VQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHI 83
           +  L++ +        II + +T     D  +   +       E+   II+GV      I
Sbjct: 1   MDILFEAESRDVDPVAIIDDRKTLSNAVDPVVAPVA-------EYTEAIINGVAVELDTI 53

Query: 84  DLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEP 143
           D L+S  + + W   RL  +  ++LR    E++    VPV   + E V IA  +      
Sbjct: 54  DDLLSEHIADTWLLERLPSVDRAVLRVACWEMLYNPDVPVTTAVVEAVEIASQYSTDKAG 113

Query: 144 KFINAVLDKVSRKEEIKRSGCVSA 167
            +INA LD ++ K +  R    + 
Sbjct: 114 AYINATLDNMASKVDELRERAANP 137


>gi|257453620|ref|ZP_05618910.1| NusB antitermination factor [Enhydrobacter aerosaccus SK60]
 gi|257449078|gb|EEV24031.1| NusB antitermination factor [Enhydrobacter aerosaccus SK60]
          Length = 186

 Score =  119 bits (298), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 34/145 (23%), Positives = 65/145 (44%), Gaps = 13/145 (8%)

Query: 17  GIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGV 76
             AR   VQ LY+  + G  + EI +   +           E+    V L ++  ++  +
Sbjct: 29  RKARRFVVQGLYEWLLTGNPSHEIEAHTRS-----------ENAMHTVHLGYYHELLSKI 77

Query: 77  MDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHD 136
           +++   +   I S L   W+  RLD +  ++L  G  E+ +   VP +V+I E + +   
Sbjct: 78  IEQSDDLIAYIDSLLNRPWT--RLDKVEQAVLLVGAYEMKQHLEVPYKVVIDEAIQLNTH 135

Query: 137 FFYGDEPKFINAVLDKVSRKEEIKR 161
           F   D  K I+ V+DK+++   +  
Sbjct: 136 FGSSDGYKMIHVVMDKIAKDARMPE 160


>gi|116511490|ref|YP_808706.1| transcription termination factor [Lactococcus lactis subsp.
           cremoris SK11]
 gi|116107144|gb|ABJ72284.1| Transcription termination factor [Lactococcus lactis subsp.
           cremoris SK11]
          Length = 325

 Score =  119 bits (298), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 30/129 (23%), Positives = 61/129 (47%), Gaps = 1/129 (0%)

Query: 29  QIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLIS 88
           Q+     +    +S+            D +        E+F  ++ GV+++K+ +++ IS
Sbjct: 198 QLQQAETTAESHLSDLLKETKHFVLNYDNDRAEDLEAPEYFTQLVDGVLEKKEDLEINIS 257

Query: 89  SCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINA 148
             L + WSFSRL ++  +IL+    E++     P  V ++E + ++ DF      +FIN 
Sbjct: 258 KYLAKNWSFSRLTLVEQAILQVSTYEILFT-DTPNVVAVNEAIELSKDFSDEKSSRFING 316

Query: 149 VLDKVSRKE 157
           VL    +++
Sbjct: 317 VLTNFLKED 325


>gi|210134202|ref|YP_002300641.1| transcription antitermination protein NusB [Helicobacter pylori
           P12]
 gi|238055353|sp|B6JPA0|NUSB_HELP2 RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|210132170|gb|ACJ07161.1| N utilization substance protein B [Helicobacter pylori P12]
          Length = 138

 Score =  119 bits (298), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 40/146 (27%), Positives = 65/146 (44%), Gaps = 13/146 (8%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           R  AR A V+ LY  +       +I S     +   + +L            +   + +G
Sbjct: 4   RTQARGAVVELLYAFESGNEEIKKIASSMLEEKKIKNNQL-----------AFALSLFNG 52

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
           V++R   ID LI   L + W F RL  +  +ILR G  E+         +II+E + +  
Sbjct: 53  VLERINEIDALIEPHL-KDWDFKRLGSMEKAILRLGAYEIGFTP-TQNPIIINECIELGK 110

Query: 136 DFFYGDEPKFINAVLDKVSRKEEIKR 161
            +   + PKF+NA+LD +S+K   K 
Sbjct: 111 LYAEPNTPKFLNAILDSLSKKLTQKP 136


>gi|15644635|ref|NP_206803.1| transcription antitermination protein NusB [Helicobacter pylori
           26695]
 gi|7387970|sp|O24853|NUSB_HELPY RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|2313078|gb|AAD07074.1| predicted coding region HP0001 [Helicobacter pylori 26695]
          Length = 138

 Score =  119 bits (298), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 39/146 (26%), Positives = 65/146 (44%), Gaps = 13/146 (8%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           R  AR A V+ LY  +       +I S     +   + +L            +   + +G
Sbjct: 4   RTQARGAVVELLYAFESGNEEIKKIASSMLEEKKIKNNQL-----------AFALSLFNG 52

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
           V+++   ID LI   L + W F RL  +  +ILR G  E+         +II+E + +  
Sbjct: 53  VLEKINEIDALIEPHL-KDWDFKRLGSMEKAILRLGAYEIGFTP-TQNPIIINECIELGK 110

Query: 136 DFFYGDEPKFINAVLDKVSRKEEIKR 161
            +   + PKF+NA+LD +S+K   K 
Sbjct: 111 LYAEPNTPKFLNAILDSLSKKLTQKP 136


>gi|319956407|ref|YP_004167670.1| nusb antitermination factor [Nitratifractor salsuginis DSM 16511]
 gi|319418811|gb|ADV45921.1| NusB antitermination factor [Nitratifractor salsuginis DSM 16511]
          Length = 143

 Score =  118 bits (297), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 36/140 (25%), Positives = 57/140 (40%), Gaps = 13/140 (9%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           R  AR A V  LY  D+      +   E        + +            E+   +  G
Sbjct: 4   RHQARRAVVGLLYAYDLGNDGIEKFSEEILESDKIRNKQ-----------REFSMRLFKG 52

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
            ++    ID  I   L E W +S++  +  +ILR G  E++        +II+E V +A 
Sbjct: 53  TIENLDKIDEEIQKHL-ESWDYSKIGKVEKAILRLGAYEIL-IEGTDRPIIINEAVELAK 110

Query: 136 DFFYGDEPKFINAVLDKVSR 155
           +      P+FIN VLD V +
Sbjct: 111 ELADEKSPQFINGVLDAVGK 130


>gi|167770740|ref|ZP_02442793.1| hypothetical protein ANACOL_02086 [Anaerotruncus colihominis DSM
           17241]
 gi|167667335|gb|EDS11465.1| hypothetical protein ANACOL_02086 [Anaerotruncus colihominis DSM
           17241]
          Length = 161

 Score =  118 bits (297), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 33/152 (21%), Positives = 60/152 (39%), Gaps = 14/152 (9%)

Query: 15  RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74
           +R  +R  A   +++      S  EII +    R     +             +   +  
Sbjct: 2   KRSESREQAFMLIFERSFKDESIDEIIEQAAIGRNLQVDD-------------YAYRLAS 48

Query: 75  GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134
            V      +D  I+S  ++KW  +R+  +  SILR  + E+    +VP    I+E V +A
Sbjct: 49  DVCGNLPWLDEAIASY-SKKWKINRMSRVALSILRLSLWEIDHVDTVPAGASINEAVELA 107

Query: 135 HDFFYGDEPKFINAVLDKVSRKEEIKRSGCVS 166
             +   D+  F+N VL    R+++      V 
Sbjct: 108 KKYGNDDDFSFVNGVLGAYVRRKDSSEQAGVE 139


>gi|288918217|ref|ZP_06412572.1| NusB antitermination factor [Frankia sp. EUN1f]
 gi|288350387|gb|EFC84609.1| NusB antitermination factor [Frankia sp. EUN1f]
          Length = 146

 Score =  118 bits (297), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 29/102 (28%), Positives = 50/102 (49%), Gaps = 2/102 (1%)

Query: 67  EWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVI 126
           ++   ++ GV+     ID  I+S   + W+  R+  +  +ILR  VLEL     VP  V+
Sbjct: 23  DYASDLVEGVVAHLGDIDRHIASH-AQGWAIDRMPPVDRNILRIAVLELFWRTDVPDGVV 81

Query: 127 ISEYVCIAHDFFYGDEPKFINAVLDKVSRKE-EIKRSGCVSA 167
           I E V +A        P F+N +L  + +++ ++ R G   A
Sbjct: 82  IDEAVRLAKTISTERSPAFVNGLLASLLQEKPQLLREGPEPA 123


>gi|207092122|ref|ZP_03239909.1| transcription antitermination protein NusB [Helicobacter pylori
           HPKX_438_AG0C1]
 gi|317011858|gb|ADU82466.1| transcription antitermination protein NusB [Helicobacter pylori
           Lithuania75]
          Length = 138

 Score =  118 bits (297), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 41/146 (28%), Positives = 65/146 (44%), Gaps = 13/146 (8%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           R  AR A V+ LY  +       +I S     +   + +L            +   + +G
Sbjct: 4   RTQARGAVVELLYAFESGNEEIKKIASSMLEEKKIKNNQL-----------AFALSLFNG 52

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
           V++R   ID LI   L + W F RL  +  +ILR G  E+         +II+E + +  
Sbjct: 53  VLERINEIDALIEPHL-KDWDFKRLGSMEKAILRLGAYEIGFTP-TQNPIIINECIELGK 110

Query: 136 DFFYGDEPKFINAVLDKVSRKEEIKR 161
            +   + PKF+NA+LD +SRK   K 
Sbjct: 111 LYAEPNTPKFLNAILDSLSRKLAQKP 136


>gi|227542181|ref|ZP_03972230.1| transcription antitermination protein NusB [Corynebacterium
           glucuronolyticum ATCC 51866]
 gi|227182010|gb|EEI62982.1| transcription antitermination protein NusB [Corynebacterium
           glucuronolyticum ATCC 51866]
          Length = 342

 Score =  118 bits (297), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 35/150 (23%), Positives = 58/150 (38%), Gaps = 9/150 (6%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           R  AR  A + L++ +       E+    E      +               + R II G
Sbjct: 13  RYKARRHAAEILFEAEARDIDPVEVTRTREELSHGTEP-------VTAPVRPYTREIIEG 65

Query: 76  VMDRKQHIDLLISSCLTE-KWSFSRLDMILCSILRAGVLELIEC-HSVPVEVIISEYVCI 133
           V      ID  I   L +  W+F RL  +  ++LR    EL+    +VP +  +++ V +
Sbjct: 66  VAVNLDLIDFAIERELADTDWTFDRLPGVDRAVLRVATWELLFNASNVPQKTAVTQAVEL 125

Query: 134 AHDFFYGDEPKFINAVLDKVSRKEEIKRSG 163
                  D P ++NAVLD + +  E     
Sbjct: 126 VSQLSTDDSPAYVNAVLDAMWKNPESPADA 155


>gi|227488822|ref|ZP_03919138.1| transcription antitermination protein NusB [Corynebacterium
           glucuronolyticum ATCC 51867]
 gi|227091244|gb|EEI26556.1| transcription antitermination protein NusB [Corynebacterium
           glucuronolyticum ATCC 51867]
          Length = 342

 Score =  118 bits (297), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 35/150 (23%), Positives = 58/150 (38%), Gaps = 9/150 (6%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           R  AR  A + L++ +       E+    E      +               + R II G
Sbjct: 13  RYKARRHAAEILFEAEARDIDPVEVTRTREELSHGPEP-------VTAPVRPYTREIIEG 65

Query: 76  VMDRKQHIDLLISSCLTE-KWSFSRLDMILCSILRAGVLELIEC-HSVPVEVIISEYVCI 133
           V      ID  I   L +  W+F RL  +  ++LR    EL+    +VP +  +++ V +
Sbjct: 66  VAVNLDLIDFAIERELADTDWTFDRLPGVDRAVLRVATWELLFNASNVPQKTAVTQAVEL 125

Query: 134 AHDFFYGDEPKFINAVLDKVSRKEEIKRSG 163
                  D P ++NAVLD + +  E     
Sbjct: 126 VSQLSTDDSPAYVNAVLDAMWKNPESPADA 155


>gi|258645389|ref|ZP_05732858.1| transcription antitermination factor NusB [Dialister invisus DSM
           15470]
 gi|260402739|gb|EEW96286.1| transcription antitermination factor NusB [Dialister invisus DSM
           15470]
          Length = 133

 Score =  118 bits (297), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 34/145 (23%), Positives = 61/145 (42%), Gaps = 17/145 (11%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           R  AR  A++ LY  +I   +              A+   D+          +   ++  
Sbjct: 3   RSKAREHALKVLYAKEINPNT--------------AELSADISDALSEKGKSFSDFLVEQ 48

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLEL--IECHSVPVEVIISEYVCI 133
           V   +  ID  I   L +KWS S+L+++  +ILR  + E           +VII+E V +
Sbjct: 49  VQLHRDEIDGEIVRFL-KKWSLSQLNIVDKNILRIAIAEFNYTYEDKADRKVIINEAVEL 107

Query: 134 AHDFFYGDEPKFINAVLDKVSRKEE 158
           A  +   +  +FIN +L  V+ ++ 
Sbjct: 108 AKVYGGENSYRFINGILSAVTGEKN 132


>gi|108562426|ref|YP_626742.1| transcription antitermination protein NusB [Helicobacter pylori
           HPAG1]
 gi|208433977|ref|YP_002265643.1| N utilization substance protein B [Helicobacter pylori G27]
 gi|217031745|ref|ZP_03437249.1| hypothetical protein HPB128_155g58 [Helicobacter pylori B128]
 gi|298737115|ref|YP_003729645.1| N utilization substance protein B [Helicobacter pylori B8]
 gi|308182189|ref|YP_003926316.1| transcription antitermination protein NusB [Helicobacter pylori
           PeCan4]
 gi|119390776|sp|Q1CVF4|NUSB_HELPH RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|238055475|sp|B5Z6D7|NUSB_HELPG RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|107836199|gb|ABF84068.1| N utilization substance protein B [Helicobacter pylori HPAG1]
 gi|208431906|gb|ACI26777.1| N utilization substance protein B [Helicobacter pylori G27]
 gi|216946592|gb|EEC25192.1| hypothetical protein HPB128_155g58 [Helicobacter pylori B128]
 gi|298356309|emb|CBI67181.1| N utilization substance protein B [Helicobacter pylori B8]
 gi|308064374|gb|ADO06266.1| transcription antitermination protein NusB [Helicobacter pylori
           PeCan4]
 gi|317179797|dbj|BAJ57583.1| transcription antitermination protein NusB [Helicobacter pylori
           F32]
          Length = 138

 Score =  118 bits (296), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 40/146 (27%), Positives = 65/146 (44%), Gaps = 13/146 (8%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           R  AR A V+ LY  +       +I S     +   + +L            +   + +G
Sbjct: 4   RTQARGAVVELLYAFESGNEEIKKIASSMLEEKKIKNNQL-----------AFALSLFNG 52

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
           V++R   ID LI   L + W F RL  +  +ILR G  E+         +II+E + +  
Sbjct: 53  VLERINEIDALIEPHL-KDWDFKRLGSMEKAILRLGAYEIGFTP-TQNPIIINECIELGK 110

Query: 136 DFFYGDEPKFINAVLDKVSRKEEIKR 161
            +   + PKF+NA+LD +S+K   K 
Sbjct: 111 LYAEPNTPKFLNAILDSLSKKLAQKP 136


>gi|227496173|ref|ZP_03926479.1| transcription antitermination protein NusB [Actinomyces
           urogenitalis DSM 15434]
 gi|226834287|gb|EEH66670.1| transcription antitermination protein NusB [Actinomyces
           urogenitalis DSM 15434]
          Length = 155

 Score =  118 bits (296), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 34/139 (24%), Positives = 57/139 (41%), Gaps = 6/139 (4%)

Query: 16  RGIARLAAVQALYQIDIIGC-STTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74
           R  AR  A++ L++ D  G     E              E  V S        + R I+ 
Sbjct: 14  RTKARRRAIEILFEADQRGLLRAGEAAENLRALA----AERAVHSANHTEAPAYTREILT 69

Query: 75  GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134
           GV D  + ID  I +  ++ WS +R+  +  +I R    E++    V V V + E   +A
Sbjct: 70  GVADHLEQIDEHIETY-SQGWSLTRMPAVDRAIARVTTWEIVYNDDVDVPVALDEAQTLA 128

Query: 135 HDFFYGDEPKFINAVLDKV 153
                 D P+++  VL ++
Sbjct: 129 KMLSTDDSPRYLGGVLGRI 147


>gi|188526813|ref|YP_001909500.1| transcription antitermination protein NusB [Helicobacter pylori
           Shi470]
 gi|217033802|ref|ZP_03439227.1| hypothetical protein HP9810_877g6 [Helicobacter pylori 98-10]
 gi|254778739|ref|YP_003056844.1| transcription antitermination protein NusB [Helicobacter pylori
           B38]
 gi|238691960|sp|B2UW05|NUSB_HELPS RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|188143053|gb|ACD47470.1| transcription antitermination protein NusB [Helicobacter pylori
           Shi470]
 gi|216943700|gb|EEC23143.1| hypothetical protein HP9810_877g6 [Helicobacter pylori 98-10]
 gi|254000650|emb|CAX28559.1| N utilization substance protein B homolog (Protein nusB),
           transcriptional antitermination factor [Helicobacter
           pylori B38]
 gi|261837458|gb|ACX97224.1| N utilization substance protein B/transcriptional antitermination
           factor [Helicobacter pylori 51]
 gi|297379224|gb|ADI34111.1| transcription antitermination factor NusB [Helicobacter pylori
           v225d]
 gi|308061306|gb|ADO03194.1| transcription antitermination protein NusB [Helicobacter pylori
           Cuz20]
 gi|308062871|gb|ADO04758.1| transcription antitermination protein NusB [Helicobacter pylori
           Sat464]
 gi|315585992|gb|ADU40373.1| transcription antitermination factor NusB [Helicobacter pylori 35A]
 gi|317008681|gb|ADU79261.1| transcription antitermination protein NusB [Helicobacter pylori
           India7]
 gi|317178310|dbj|BAJ56098.1| transcription antitermination protein NusB [Helicobacter pylori
           F30]
 gi|317181291|dbj|BAJ59075.1| transcription antitermination protein NusB [Helicobacter pylori
           F57]
 gi|332672789|gb|AEE69606.1| transcription antitermination factor NusB [Helicobacter pylori 83]
          Length = 138

 Score =  118 bits (296), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 39/146 (26%), Positives = 65/146 (44%), Gaps = 13/146 (8%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           R  AR A V+ LY  +       +I S     +   + +L            +   + +G
Sbjct: 4   RTQARGAVVELLYAFESGNEEIKKIASSMLEEKKIKNNQL-----------AFALSLFNG 52

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
           V+++   ID LI   L + W F RL  +  +ILR G  E+         +II+E + +  
Sbjct: 53  VLEKINEIDALIEPHL-KDWDFKRLGSMEKAILRLGAYEIGFTP-TQNPIIINECIELGK 110

Query: 136 DFFYGDEPKFINAVLDKVSRKEEIKR 161
            +   + PKF+NA+LD +S+K   K 
Sbjct: 111 LYAEPNTPKFLNAILDSLSKKLAQKP 136


>gi|225025922|ref|ZP_03715114.1| hypothetical protein EUBHAL_00158 [Eubacterium hallii DSM 3353]
 gi|224956708|gb|EEG37917.1| hypothetical protein EUBHAL_00158 [Eubacterium hallii DSM 3353]
          Length = 133

 Score =  118 bits (296), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 37/145 (25%), Positives = 65/145 (44%), Gaps = 12/145 (8%)

Query: 10  LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF 69
           +K+S  R   R      L++++     T E + E   + F    +++ +      D  + 
Sbjct: 1   MKMS--RRKVRETIFLLLFRVEFN---TQEELQEQIKWYFEERPDIEGK------DQIYI 49

Query: 70  RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISE 129
              I  ++ R   ID  I S + E W   RL     +ILR  V E+    ++P  V I+E
Sbjct: 50  ETKIGSILKRLPEIDEQIHS-ICEGWRLERLGKPELAILRLAVYEITNDANIPTGVAINE 108

Query: 130 YVCIAHDFFYGDEPKFINAVLDKVS 154
            V +A  +   + P+F+N VL K++
Sbjct: 109 AVELAKIYCSEEAPRFVNGVLAKLA 133


>gi|124514784|gb|EAY56296.1| transcription antitermination factor (NusB) [Leptospirillum
           rubarum]
          Length = 168

 Score =  118 bits (296), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 31/147 (21%), Positives = 62/147 (42%), Gaps = 18/147 (12%)

Query: 17  GIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGV 76
             AR+  +Q+L+  +                           +  L      FR  + G 
Sbjct: 22  HKARIEVLQSLFAGE----------------YLPGGPPPFTLTSTLPSQARLFRDRLGGA 65

Query: 77  M-DRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
           + + ++ ID +IS   +  W+  R+  +  +ILR G+ E++    VP  V + E + +AH
Sbjct: 66  IREHREEIDTVISRF-SVDWTLDRMSRVDRNILRMGICEILFEPEVPFRVTVDESLELAH 124

Query: 136 DFFYGDEPKFINAVLDKVSRKEEIKRS 162
            F   +  +FIN +L +V  +   +++
Sbjct: 125 QFSEPEAVRFINGILHRVGTELNPEKA 151


>gi|57168521|ref|ZP_00367654.1| transcription antitermination factor NusB [Campylobacter coli
           RM2228]
 gi|305432938|ref|ZP_07402096.1| transcription antitermination factor NusB [Campylobacter coli JV20]
 gi|57020026|gb|EAL56703.1| transcription antitermination factor NusB [Campylobacter coli
           RM2228]
 gi|304444092|gb|EFM36747.1| transcription antitermination factor NusB [Campylobacter coli JV20]
          Length = 132

 Score =  118 bits (296), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 31/143 (21%), Positives = 62/143 (43%), Gaps = 14/143 (9%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           R   R + +  LY +++   +    I E+   +   + + +           +   +  G
Sbjct: 4   RHQVRQSVISLLYALEMNEKN-ENFIDEFLNEKKIRNEQKN-----------FTLSLYEG 51

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
           ++     ID  ++  L E     +L  I  +ILR G  EL+     P  ++I+E + +A 
Sbjct: 52  IIKNLDDIDKNLNPYLNEN-EIEKLGHIERAILRLGAYELLFT-DTPNAIVINEAIELAK 109

Query: 136 DFFYGDEPKFINAVLDKVSRKEE 158
           +    + PKFIN VLD + + ++
Sbjct: 110 ELANDNSPKFINGVLDTLVKAKQ 132


>gi|15611072|ref|NP_222723.1| transcription antitermination protein NusB [Helicobacter pylori
           J99]
 gi|7387981|sp|Q9ZN57|NUSB_HELPJ RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|4154504|gb|AAD05585.1| TRANSCRIPTION TERMINATION [Helicobacter pylori J99]
          Length = 138

 Score =  118 bits (296), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 39/146 (26%), Positives = 65/146 (44%), Gaps = 13/146 (8%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           R  AR A V+ LY  +       +I S     +   + +L            +   + +G
Sbjct: 4   RTQARGAVVELLYAFESGNEEIKKIASSMLEEKKIKNNQL-----------AFALSLFNG 52

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
           V+++   ID LI   L + W F RL  +  +ILR G  E+         +II+E + +  
Sbjct: 53  VLEKINEIDALIEPHL-KDWDFKRLGSMEKAILRLGAYEIGFTP-TQNPIIINECIELGK 110

Query: 136 DFFYGDEPKFINAVLDKVSRKEEIKR 161
            +   + PKF+NA+LD +S+K   K 
Sbjct: 111 LYAEPNTPKFLNAILDSLSKKLAQKP 136


>gi|261838874|gb|ACX98639.1| transcription antitermination protein NusB [Helicobacter pylori 52]
          Length = 138

 Score =  118 bits (296), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 39/146 (26%), Positives = 65/146 (44%), Gaps = 13/146 (8%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           R  AR A V+ LY  +       +I S     +   + +L            +   + +G
Sbjct: 4   RTQARGAVVELLYAFESGNEEIKKIASSILEEKKIKNNQL-----------AFALSLFNG 52

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
           V+++   ID LI   L + W F RL  +  +ILR G  E+         +II+E + +  
Sbjct: 53  VLEKINEIDALIEPHL-KDWDFKRLGSMEKAILRLGAYEIGFTP-TQNPIIINECIELGK 110

Query: 136 DFFYGDEPKFINAVLDKVSRKEEIKR 161
            +   + PKF+NA+LD +S+K   K 
Sbjct: 111 LYAEPNTPKFLNAILDSLSKKLAQKP 136


>gi|150390264|ref|YP_001320313.1| NusB antitermination factor [Alkaliphilus metalliredigens QYMF]
 gi|149950126|gb|ABR48654.1| NusB antitermination factor [Alkaliphilus metalliredigens QYMF]
          Length = 129

 Score =  117 bits (295), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 26/135 (19%), Positives = 58/135 (42%), Gaps = 12/135 (8%)

Query: 24  VQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHI 83
           ++ L+++++      E I  Y          +D E   +    E+    I   ++  + I
Sbjct: 1   MKVLFEMEMNNEMNVESIKLY----------MDREPQKIEQ-QEYVHTSITKTIENLEEI 49

Query: 84  DLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEP 143
           D  I    ++ W  +R+  +  +ILR  + E++    +P  V ++E + +   +   +  
Sbjct: 50  DTYIKQY-SKGWKLNRIANVDLAILRLALTEMLHMGEIPYRVSVNEAIELGKKYSAEESA 108

Query: 144 KFINAVLDKVSRKEE 158
            FIN +L +   +EE
Sbjct: 109 SFINGILGRFIEEEE 123


>gi|118602517|ref|YP_903732.1| NusB antitermination factor [Candidatus Ruthia magnifica str. Cm
           (Calyptogena magnifica)]
 gi|118567456|gb|ABL02261.1| NusB antitermination factor [Candidatus Ruthia magnifica str. Cm
           (Calyptogena magnifica)]
          Length = 140

 Score =  117 bits (295), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 33/150 (22%), Positives = 64/150 (42%), Gaps = 16/150 (10%)

Query: 11  KLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFR 70
           K S +R   R   VQALYQ  + G    +I  ++   +               +   +F 
Sbjct: 4   KTSKQRS--RERVVQALYQYLVSGGEILQIEQQFLNQKQG------------KISKAFFS 49

Query: 71  VIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEY 130
            +   ++  K  +D +I+  +  +    +L  +  +IL  G  EL     VP +++I+E 
Sbjct: 50  NLFINILKNKSLLDEIIAPTINRE--TEQLGAVEHAILYLGAFELKFSPGVPYKIVINES 107

Query: 131 VCIAHDFFYGDEPKFINAVLDKVSRKEEIK 160
           + +A  +      K IN  LDK+++  + +
Sbjct: 108 LELAKLYGAEGAHKLINVSLDKLAQTLQPR 137


>gi|169350501|ref|ZP_02867439.1| hypothetical protein CLOSPI_01269 [Clostridium spiroforme DSM 1552]
 gi|169292821|gb|EDS74954.1| hypothetical protein CLOSPI_01269 [Clostridium spiroforme DSM 1552]
          Length = 134

 Score =  117 bits (295), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 39/144 (27%), Positives = 70/144 (48%), Gaps = 11/144 (7%)

Query: 10  LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF 69
           +K  +R+ + R  AV A+YQ  +I  +T E+ +  ++         D E      D ++ 
Sbjct: 1   MKK-YRKKLIREKAVIAIYQKLLIDITTEEVYNYLDS---------DKELANDKDDYDYC 50

Query: 70  RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISE 129
            ++I  + +  +     ++  L + WS  RL  +  +IL  G  EL+E      EVII+E
Sbjct: 51  VMLISSIANNLEKYKAEVAKHLKKGWSLERLSKMELAILLVGCYELLETDQS-KEVIINE 109

Query: 130 YVCIAHDFFYGDEPKFINAVLDKV 153
            V ++  +   D  KF+N VL+K+
Sbjct: 110 AVELSKKYCDDDVYKFVNGVLNKI 133


>gi|15807061|ref|NP_295790.1| N-utilization substance protein B [Deinococcus radiodurans R1]
 gi|22095974|sp|Q9RSQ7|NUSB_DEIRA RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|6459861|gb|AAF11617.1|AE002043_2 N-utilization substance protein B [Deinococcus radiodurans R1]
          Length = 192

 Score =  117 bits (295), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 37/168 (22%), Positives = 65/168 (38%), Gaps = 8/168 (4%)

Query: 1   MTIQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESV 60
           MT +  +K ++    R  AR    + L++ D        +     T       E D    
Sbjct: 1   MT-RRREKAVQPVGTRRAAREFVFRVLFEADRGDVPLQAVF----TRAEGVMREGDDTFP 55

Query: 61  YLHVDLEWF-RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECH 119
            L  D   F   ++ G+   ++ ID ++   +   W+F ++     ++LR    EL+   
Sbjct: 56  QLGPDALHFAEELVTGLERHREAIDDVLHRTI-RGWTFDQMAQTDLNVLRLATYELMYTP 114

Query: 120 SVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRSGCVSA 167
             P   +I   V IA  F   D  +F+N VL  +SR    +     +A
Sbjct: 115 E-PHPPVIESAVRIARKFGGDDSGRFVNGVLAGLSRNLREEVGESPAA 161


>gi|329770465|ref|ZP_08261844.1| transcription antitermination factor NusB [Gemella sanguinis M325]
 gi|328836320|gb|EGF85986.1| transcription antitermination factor NusB [Gemella sanguinis M325]
          Length = 131

 Score =  117 bits (295), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 35/140 (25%), Positives = 60/140 (42%), Gaps = 18/140 (12%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           R   R +  + L+Q++               YR   + E+D  S       E+    +  
Sbjct: 4   RHELRESVFKILFQVENTDLD----------YRELLEFEVDDVSG-----SEYVTRTLDD 48

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
           +  +K+ ID +IS+ L + W   RL  +   ILR    E++    +P +V I+E V ++ 
Sbjct: 49  IFAKKEQIDEIISNNL-KGWKLERLSKMDRQILRISTYEILFT-DIPYKVSINEAVELSK 106

Query: 136 DFFY-GDEPKFINAVLDKVS 154
            +    D  KFIN VL  + 
Sbjct: 107 KYSEKDDSYKFINGVLKGIV 126


>gi|58584450|ref|YP_198023.1| transcription termination factor, NusB [Wolbachia endosymbiont
           strain TRS of Brugia malayi]
 gi|58418766|gb|AAW70781.1| Transcription termination factor, NusB [Wolbachia endosymbiont
           strain TRS of Brugia malayi]
          Length = 160

 Score =  117 bits (294), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 44/161 (27%), Positives = 69/161 (42%), Gaps = 3/161 (1%)

Query: 3   IQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYL 62
           +++   + K   +R  AR  AVQ  Y    +G   +    E    R       D+     
Sbjct: 1   MEEEPVEKKWRIKRSAARFLAVQVAYSNIFMGYDKSTFELENCGLRNYVGKLADIFECE- 59

Query: 63  HVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVP 122
             D ++   +++ V+      D +I   L   WS  RL+++  SILR  V EL  C   P
Sbjct: 60  EFDYQFLEKLLYKVIRSGGEYDKIIEYYLHPSWSLLRLNLVSLSILRVAVCELANC-DTP 118

Query: 123 VEVIISEYVCIAHDFFY-GDEPKFINAVLDKVSRKEEIKRS 162
             V+I+EY  IA D      E  FIN +LDK     ++ ++
Sbjct: 119 APVVINEYTNIASDLLDKPSEIGFINGLLDKAKSAVKLNKN 159


>gi|225018827|ref|ZP_03708019.1| hypothetical protein CLOSTMETH_02777 [Clostridium methylpentosum
           DSM 5476]
 gi|224948387|gb|EEG29596.1| hypothetical protein CLOSTMETH_02777 [Clostridium methylpentosum
           DSM 5476]
          Length = 132

 Score =  117 bits (294), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 35/144 (24%), Positives = 65/144 (45%), Gaps = 14/144 (9%)

Query: 15  RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74
           +R   R  A   +++        +E+I+  E    C + E++ + +           +  
Sbjct: 2   KRHQMRENAFILVFEKIFNDDDVSEVIAAAEE---CGEFEVNSDVI----------ALFT 48

Query: 75  GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134
           GV      +D LIS  LT+ W+ +RL  ++ +ILR  V E++    V   + I+E V +A
Sbjct: 49  GVQQHISELDRLISEHLTK-WNITRLSKVILAILRLAVYEIVYVERVEAPIAINEAVELA 107

Query: 135 HDFFYGDEPKFINAVLDKVSRKEE 158
            ++   ++  F+N VL    R  E
Sbjct: 108 KEYATQEDAAFVNGVLGSFVRAAE 131


>gi|260903826|ref|ZP_05912148.1| NusB antitermination factor [Brevibacterium linens BL2]
          Length = 121

 Score =  117 bits (294), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 31/113 (27%), Positives = 53/113 (46%), Gaps = 4/113 (3%)

Query: 44  YETYRFCADTELDVESVYLHVD---LEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRL 100
           +E  +   DTE  V       D     +   I+ G+   ++ ID +I++   E W+  R+
Sbjct: 2   FEAGQRRLDTEQIVTMRSNDPDYPMKAYAVEIVEGITSHREEIDEIIATY-AEGWTLERM 60

Query: 101 DMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKV 153
             +  ++L+ G  E+I    VP +  I E V +A  F   D P FI+ +L +V
Sbjct: 61  PAVDLALLQIGTWEIIFNDEVPDKAAIDEAVSLARQFSTDDSPGFISGLLSRV 113


>gi|302387570|ref|YP_003823392.1| NusB antitermination factor [Clostridium saccharolyticum WM1]
 gi|302198198|gb|ADL05769.1| NusB antitermination factor [Clostridium saccharolyticum WM1]
          Length = 147

 Score =  117 bits (294), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 39/146 (26%), Positives = 62/146 (42%), Gaps = 8/146 (5%)

Query: 16  RGIARLAAVQALYQIDI--IGCSTTEIISEYETYRFCADTELDVESVYLHVDL-----EW 68
           R   R    + L+  D       T ++I  +E  +        VE +   VD+      +
Sbjct: 3   RSKMREHCFKMLFCADFYPAEEKTGQLIQYFEEPKEDDLNADGVEEIIHDVDMSEENAAY 62

Query: 69  FRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIIS 128
            R     VM R   +DL I+  + E W   R+     +ILR  + E++    VP +V I+
Sbjct: 63  LRERAESVMARIPELDLKINE-VAEGWKTKRMGKAELTILRLALYEILFDEDVPEKVAIN 121

Query: 129 EYVCIAHDFFYGDEPKFINAVLDKVS 154
           E V +A  +   + P FIN VL K+ 
Sbjct: 122 EAVELAKKYGGNEAPAFINGVLAKLV 147


>gi|229828872|ref|ZP_04454941.1| hypothetical protein GCWU000342_00957 [Shuttleworthia satelles DSM
           14600]
 gi|229792035|gb|EEP28149.1| hypothetical protein GCWU000342_00957 [Shuttleworthia satelles DSM
           14600]
          Length = 152

 Score =  117 bits (294), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 35/155 (22%), Positives = 63/155 (40%), Gaps = 16/155 (10%)

Query: 11  KLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFR 70
           K +  R   R  A + L+   ++     + + +     F   TEL+++ +    D +   
Sbjct: 3   KKTMIRRQIRETAFRILF---VLNFCPADQMQDQLNLYFTDHTELEIDDLTEEEDQKAVI 59

Query: 71  VI-----------IHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECH 119
            +             G       ID +I    +E W  SRL  +  ++LR  V E+    
Sbjct: 60  RLDQASWPEITAKCLGAAGHLPEIDRIIEES-SEGWKLSRLTKVDLTLLRLAVYEMKF-E 117

Query: 120 SVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVS 154
           ++P  + I+E V +A  +     P F+N VL K+S
Sbjct: 118 NLPSGIAINEAVELAKRYGTDKSPAFVNGVLAKIS 152


>gi|94984805|ref|YP_604169.1| NusB antitermination factor [Deinococcus geothermalis DSM 11300]
 gi|119390766|sp|Q1J0I4|NUSB_DEIGD RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|94555086|gb|ABF45000.1| NusB antitermination factor [Deinococcus geothermalis DSM 11300]
          Length = 169

 Score =  117 bits (294), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 33/155 (21%), Positives = 63/155 (40%), Gaps = 6/155 (3%)

Query: 1   MTIQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESV 60
           MT +  ++  +    R  AR  A + L++ +        + +  E      D   D  + 
Sbjct: 1   MT-RRRERGQQPVGTRRAAREFAFRVLFEAERGKLPLETVFTRAEGDMREGD---DTFAQ 56

Query: 61  YLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHS 120
                L + R ++ G+ +R+  +D  +   +   W F ++     ++LR    E++    
Sbjct: 57  LNAEALAFARQLVDGLGERRADVDAALRRTI-RGWDFEQMAQTDLNVLRLATYEMLYTPE 115

Query: 121 VPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSR 155
            P   +I   V IA  F   D  +F+N VL  +SR
Sbjct: 116 -PHPPVIESAVRIARKFGGEDSGRFVNGVLGGLSR 149


>gi|307636683|gb|ADN79133.1| Transcription termination protein [Helicobacter pylori 908]
 gi|325995267|gb|ADZ50672.1| Transcription termination protein [Helicobacter pylori 2018]
 gi|325996871|gb|ADZ49079.1| Transcription termination protein [Helicobacter pylori 2017]
          Length = 138

 Score =  117 bits (294), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 40/146 (27%), Positives = 65/146 (44%), Gaps = 13/146 (8%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           R  AR A V+ LY  +       +I S     +   + +L            +   + +G
Sbjct: 4   RTQARGAVVELLYAFESGNEEIKKIASSMLEEKKIKNNQL-----------VFALSLFNG 52

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
           V++R   ID LI   L + W F RL  +  +ILR G  E+         +II+E + +  
Sbjct: 53  VLERINEIDALIEPHL-KDWDFKRLGSMEKAILRLGAYEIGFTP-TQNPIIINECIELGK 110

Query: 136 DFFYGDEPKFINAVLDKVSRKEEIKR 161
            +   + PKF+NA+LD +S+K   K 
Sbjct: 111 LYAEPNTPKFLNAILDSLSKKLAQKP 136


>gi|56416682|ref|YP_153756.1| N utilization substance protein B [Anaplasma marginale str. St.
           Maries]
 gi|222475047|ref|YP_002563462.1| N utilization substance protein B (nusB) [Anaplasma marginale str.
           Florida]
 gi|56387914|gb|AAV86501.1| N utilization substance protein B [Anaplasma marginale str. St.
           Maries]
 gi|222419183|gb|ACM49206.1| N utilization substance protein B (nusB) [Anaplasma marginale str.
           Florida]
          Length = 177

 Score =  117 bits (294), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 45/168 (26%), Positives = 71/168 (42%), Gaps = 7/168 (4%)

Query: 1   MTIQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESV 60
           M       DL     +  AR  AVQ  Y +        E +     +      E+     
Sbjct: 5   MEADSKSDDLPWYSGKTSARFLAVQGAYSMMFS-SYAAEDLDGLLEHL----CEMRGVFG 59

Query: 61  YLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHS 120
              VD +    I+  ++ R   ID  IS  + + WS  R++++  SI+RAG+ EL+ C S
Sbjct: 60  LGRVDKKLLTKILRSMLARCSEIDATISEHINKNWSMDRINLVSLSIMRAGICELL-CFS 118

Query: 121 VPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRSGCVSAI 168
               ++I+EYV IA       E  F+NA+L+K ++     R   V   
Sbjct: 119 TNESIVINEYVDIASYALEDAEVNFVNAILNK-AKTVRFGRGTEVQNP 165


>gi|325661675|ref|ZP_08150298.1| transcription antitermination factor NusB [Lachnospiraceae
           bacterium 4_1_37FAA]
 gi|325471928|gb|EGC75143.1| transcription antitermination factor NusB [Lachnospiraceae
           bacterium 4_1_37FAA]
          Length = 134

 Score =  117 bits (293), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 36/139 (25%), Positives = 61/139 (43%), Gaps = 10/139 (7%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           R   R    + L++I+       E+  +   Y    ++  D E        E+ R     
Sbjct: 3   RSELREHIFRILFRIEF--QPKEEMEEQLALYLEELESAKDTEK-------EYIRTKYAA 53

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
           + ++ + ID  I++ +T  W  SR+  +  +ILR  V E+     VP  V I+E V +A 
Sbjct: 54  IAEKVEMIDEKINASVT-GWKTSRMGKVDLTILRLAVYEIEWDEEVPQGVAINEAVELAK 112

Query: 136 DFFYGDEPKFINAVLDKVS 154
            +   + P FIN VL K+ 
Sbjct: 113 RYGGEESPSFINGVLGKIV 131


>gi|331084732|ref|ZP_08333820.1| transcription antitermination factor NusB [Lachnospiraceae
           bacterium 9_1_43BFAA]
 gi|330410826|gb|EGG90248.1| transcription antitermination factor NusB [Lachnospiraceae
           bacterium 9_1_43BFAA]
          Length = 134

 Score =  117 bits (293), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 36/139 (25%), Positives = 61/139 (43%), Gaps = 10/139 (7%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           R   R    + L++I+       E+  +   Y    ++  D E        E+ R     
Sbjct: 3   RSELREHIFRILFRIEF--QPKEEMEEQLALYLEELESAKDTEK-------EYIRTKYAA 53

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
           + ++ + ID  I++ +T  W  SR+  +  +ILR  V E+     VP  V I+E V +A 
Sbjct: 54  IAEKVEMIDEKINASVT-GWKTSRMGKVDLTILRLAVYEIEWDEEVPQGVAINEAVELAK 112

Query: 136 DFFYGDEPKFINAVLDKVS 154
            +   + P FIN VL K+ 
Sbjct: 113 RYGGEESPSFINGVLGKIV 131


>gi|269958899|ref|YP_003328688.1| N utilization substance protein B [Anaplasma centrale str. Israel]
 gi|269848730|gb|ACZ49374.1| N utilization substance protein B [Anaplasma centrale str. Israel]
          Length = 173

 Score =  117 bits (293), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 45/166 (27%), Positives = 78/166 (46%), Gaps = 7/166 (4%)

Query: 1   MTIQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESV 60
           M +     +L     +  AR  AVQ  Y +     ST + + E   +      E+     
Sbjct: 1   MGVGSESDNLPWYSGKTSARFLAVQGAYSMMFSSYSTED-LDELLEHL----CEMRDVLG 55

Query: 61  YLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHS 120
              VD      I+  ++ +   ID +IS  +++KW+  R+++I  S++RAG+ EL+ C +
Sbjct: 56  LGRVDKRLLTKILGSMLSKYSEIDAIISEHISKKWTMDRINLISLSVMRAGICELL-CFN 114

Query: 121 VPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRSGCVS 166
               V+I+EYV IA       E  F+NA+L+K ++   + R   V 
Sbjct: 115 TNESVVINEYVDIASYALEDAEVDFVNAILNK-AKVVRLGRGAEVQ 159


>gi|254994892|ref|ZP_05277082.1| N utilization substance protein B (nusB) [Anaplasma marginale str.
           Mississippi]
 gi|255003026|ref|ZP_05277990.1| N utilization substance protein B (nusB) [Anaplasma marginale str.
           Puerto Rico]
 gi|255004149|ref|ZP_05278950.1| N utilization substance protein B (nusB) [Anaplasma marginale str.
           Virginia]
          Length = 173

 Score =  117 bits (293), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 45/168 (26%), Positives = 71/168 (42%), Gaps = 7/168 (4%)

Query: 1   MTIQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESV 60
           M       DL     +  AR  AVQ  Y +        E +     +      E+     
Sbjct: 1   MEADSKSDDLPWYSGKTSARFLAVQGAYSMMFS-SYAAEDLDGLLEHL----CEMRGVFG 55

Query: 61  YLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHS 120
              VD +    I+  ++ R   ID  IS  + + WS  R++++  SI+RAG+ EL+ C S
Sbjct: 56  LGRVDKKLLTKILRSMLARCSEIDATISEHINKNWSMDRINLVSLSIMRAGICELL-CFS 114

Query: 121 VPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRSGCVSAI 168
               ++I+EYV IA       E  F+NA+L+K ++     R   V   
Sbjct: 115 TNESIVINEYVDIASYALEDAEVNFVNAILNK-AKTVRFGRGTEVQNP 161


>gi|227503547|ref|ZP_03933596.1| transcription antitermination protein NusB [Corynebacterium
           accolens ATCC 49725]
 gi|227075583|gb|EEI13546.1| transcription antitermination protein NusB [Corynebacterium
           accolens ATCC 49725]
          Length = 211

 Score =  117 bits (293), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 34/130 (26%), Positives = 57/130 (43%), Gaps = 7/130 (5%)

Query: 26  ALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDL 85
            LY+ +        I+ +            D  +V    D  + +VI+ GV +    ID 
Sbjct: 28  ILYEAENRDVDPVAIVEDRVALAR-----EDRHAVAPIAD--YTKVIVQGVAEELDAIDD 80

Query: 86  LISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKF 145
            IS  L++ W   R+  +  +ILR  V EL+    VP    + E V +A  + +     +
Sbjct: 81  TISRYLSQNWELHRIPAVDRAILRLSVWELLFNPDVPTATAVVEGVELASQYSHDQAAPY 140

Query: 146 INAVLDKVSR 155
           I+AVLD V++
Sbjct: 141 IHAVLDDVAQ 150


>gi|269467885|gb|EEZ79624.1| transcription termination factor [uncultured SUP05 cluster
           bacterium]
          Length = 142

 Score =  116 bits (292), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 30/147 (20%), Positives = 63/147 (42%), Gaps = 14/147 (9%)

Query: 10  LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF 69
           +     +  +R   VQA+YQ  + G    +I  ++   +               +   +F
Sbjct: 1   MAFKTPKQRSRERVVQAVYQYLVSGGEVLQIEQQFLNQKEG------------KISKAFF 48

Query: 70  RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISE 129
             +   ++  +  +D LI+  ++ +     L  +  ++L  GV EL     VP +V+I+E
Sbjct: 49  SNLFINILKNRIELDELIAPTISRE--TDELGSVEHAVLYLGVYELQNSIEVPYKVVINE 106

Query: 130 YVCIAHDFFYGDEPKFINAVLDKVSRK 156
            + IA  +      K IN+ LD++++ 
Sbjct: 107 ALEIAKLYGAEGAFKLINSSLDQLAKD 133


>gi|266620364|ref|ZP_06113299.1| transcription antitermination factor NusB [Clostridium hathewayi
           DSM 13479]
 gi|288868036|gb|EFD00335.1| transcription antitermination factor NusB [Clostridium hathewayi
           DSM 13479]
          Length = 147

 Score =  116 bits (292), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 36/146 (24%), Positives = 59/146 (40%), Gaps = 8/146 (5%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTE--IISEYETYRFCADTELDVESVYLHVDLE-----W 68
           R   R    + L+  D       E  I   ++  +    T   VE +   V++      +
Sbjct: 3   RSKLREHCFKMLFCADFYPAEEKEEQIERYFDEPKEDETTPEGVEEILHDVEMSPEEESY 62

Query: 69  FRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIIS 128
            +     VM +   +D  I   + E W   R+     +ILR  + E++    VP +V I+
Sbjct: 63  LKTKTEAVMRKIPELDEKID-AVAEGWKTKRMGKAELTILRLALYEILYDEEVPEKVAIN 121

Query: 129 EYVCIAHDFFYGDEPKFINAVLDKVS 154
           E V +A  F   + P FIN VL K+ 
Sbjct: 122 EAVELAKRFGGNEAPAFINGVLAKLV 147


>gi|52840964|ref|YP_094763.1| transcription termination factor NusB [Legionella pneumophila
           subsp. pneumophila str. Philadelphia 1]
 gi|52628075|gb|AAU26816.1| transcription termination factor NusB [Legionella pneumophila
           subsp. pneumophila str. Philadelphia 1]
          Length = 123

 Score =  116 bits (292), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 27/125 (21%), Positives = 59/125 (47%), Gaps = 13/125 (10%)

Query: 32  IIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCL 91
           + G    EI +++ T                 VD E+F  +++G+    + ++  +   L
Sbjct: 1   MSGTDLHEIEAQFRTIN-----------NMDKVDGEYFCRLLYGIPTHVEALEASLLPYL 49

Query: 92  TEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLD 151
             +   + L+ I  ++LR G  EL  C  +P +VI+ E V +  +F   +  +++N VL+
Sbjct: 50  DRE--INALNPIELTVLRIGSFELFHCPEIPYKVILDESVSLTKEFGSQEGYRYVNGVLN 107

Query: 152 KVSRK 156
            ++++
Sbjct: 108 NLAKQ 112


>gi|306836202|ref|ZP_07469186.1| N utilization substance protein B [Corynebacterium accolens ATCC
           49726]
 gi|304567923|gb|EFM43504.1| N utilization substance protein B [Corynebacterium accolens ATCC
           49726]
          Length = 212

 Score =  116 bits (292), Expect = 9e-25,   Method: Composition-based stats.
 Identities = 34/130 (26%), Positives = 57/130 (43%), Gaps = 7/130 (5%)

Query: 26  ALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDL 85
            LY+ +        I+ +            D  +V    D  + +VI+ GV +    ID 
Sbjct: 28  ILYEAENRDVDPVAIVEDRVALAR-----EDRHAVAPIAD--YTKVIVQGVAEELDAIDD 80

Query: 86  LISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKF 145
            IS  L++ W   R+  +  +ILR  V EL+    VP    + E V +A  + +     +
Sbjct: 81  TISRYLSQNWELHRIPAVDRAILRLSVWELLFNPDVPTATAVVEGVELASQYSHDQAAPY 140

Query: 146 INAVLDKVSR 155
           I+AVLD V++
Sbjct: 141 IHAVLDDVAQ 150


>gi|332653013|ref|ZP_08418758.1| transcription antitermination factor NusB [Ruminococcaceae
           bacterium D16]
 gi|332518159|gb|EGJ47762.1| transcription antitermination factor NusB [Ruminococcaceae
           bacterium D16]
          Length = 164

 Score =  116 bits (292), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 29/155 (18%), Positives = 55/155 (35%), Gaps = 4/155 (2%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVE---SVYLHVDLEWFRVI 72
           R  AR  AV  ++ +     S  E++    T     +   + +            + R +
Sbjct: 3   RSTAREIAVHLIFSLGFGTQSAEEVLDSELTRERFEELGGESQLYAQFPNEKQERYIRDL 62

Query: 73  IHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVC 132
           + GV      +D  I+      WSF+R+  +  +ILR  + E++    +P    I   V 
Sbjct: 63  VRGVFAHGPELDDYIARYAV-GWSFARIPRMAAAILRTAMYEVLYMPDIPNAAAIDAAVE 121

Query: 133 IAHDFFYGDEPKFINAVLDKVSRKEEIKRSGCVSA 167
           +   +   +   F+N +L    R E          
Sbjct: 122 MTKKYEPQEVAAFVNGILGTFVRTEFPDTPAKPEK 156


>gi|189501850|ref|YP_001957567.1| hypothetical protein Aasi_0422 [Candidatus Amoebophilus asiaticus
           5a2]
 gi|189497291|gb|ACE05838.1| hypothetical protein Aasi_0422 [Candidatus Amoebophilus asiaticus
           5a2]
          Length = 378

 Score =  116 bits (291), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 27/103 (26%), Positives = 53/103 (51%), Gaps = 1/103 (0%)

Query: 53  TELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGV 112
            E++           ++  +I   +++++ ID LI   + + WS  R  ++   I++ G+
Sbjct: 275 KEIEDAMQIGTNAASFYDKLIATALEQEKFIDNLIQQHI-KNWSIERTVLLDRIIIKMGL 333

Query: 113 LELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSR 155
            E+    S+P +V I+EYV +A  +      KFIN VLD +++
Sbjct: 334 CEMKYFDSIPTKVAINEYVDLAKKYSTAKSSKFINGVLDTIAK 376


>gi|91205934|ref|YP_538289.1| transcription antitermination protein NusB [Rickettsia bellii
           RML369-C]
 gi|157826705|ref|YP_001495769.1| transcription antitermination protein NusB [Rickettsia bellii OSU
           85-389]
 gi|119390813|sp|Q1RHG4|NUSB_RICBR RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|166215711|sp|A8GV61|NUSB_RICB8 RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|91069478|gb|ABE05200.1| N utilization substance protein B [Rickettsia bellii RML369-C]
 gi|157802009|gb|ABV78732.1| transcription antitermination protein NusB [Rickettsia bellii OSU
           85-389]
          Length = 156

 Score =  116 bits (291), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 34/131 (25%), Positives = 70/131 (53%)

Query: 28  YQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLI 87
           YQ  +      + I E     +  DT +    + + + +  F++++  V +    ID +I
Sbjct: 21  YQHMLRNNDNIDDIIENVLSFYRNDTSMTDSPIKISLTISHFKMLVKLVFENIDKIDEII 80

Query: 88  SSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFIN 147
           S+ L    + + + ++L ++LR+G+ EL+    +P +VII+EY  IA+D     E  F+N
Sbjct: 81  SNHLVNDKNQNHIPILLQALLRSGICELLFFPDIPTKVIINEYTDIANDMLNDHEIGFVN 140

Query: 148 AVLDKVSRKEE 158
           ++LDK++ + +
Sbjct: 141 SILDKIAHENK 151


>gi|169333804|ref|ZP_02860997.1| hypothetical protein ANASTE_00190 [Anaerofustis stercorihominis DSM
           17244]
 gi|169259369|gb|EDS73335.1| hypothetical protein ANASTE_00190 [Anaerofustis stercorihominis DSM
           17244]
          Length = 132

 Score =  116 bits (291), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 34/142 (23%), Positives = 65/142 (45%), Gaps = 13/142 (9%)

Query: 15  RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74
           +R +AR    + ++QI             +         ++ ++S       E+ +  + 
Sbjct: 2   KRDVARDLVYKIIFQI------------NFHDDFAERYEQMILDSGIKGTQGEYAKKTVK 49

Query: 75  GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134
           G++D  + ID  I   L + W F RL   + ++LR GV E++    +P  V ++E V +A
Sbjct: 50  GILDNLEEIDDTIKDNL-KGWKFERLSTHVIAVLRLGVFEIMYNEDIPPLVGLNEAVSLA 108

Query: 135 HDFFYGDEPKFINAVLDKVSRK 156
           H +    E  F+N +L+ V +K
Sbjct: 109 HTYSDEKEATFVNGLLNSVYKK 130


>gi|109946871|ref|YP_664099.1| transcription antitermination protein NusB [Helicobacter
           acinonychis str. Sheeba]
 gi|122973428|sp|Q17Z26|NUSB_HELAH RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|109714092|emb|CAJ99100.1| transcription termination protein [Helicobacter acinonychis str.
           Sheeba]
          Length = 138

 Score =  116 bits (291), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 37/146 (25%), Positives = 64/146 (43%), Gaps = 13/146 (8%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           R  AR A ++ LY  +       +I       +   + +L            +   + +G
Sbjct: 4   RTQARGAVIELLYAFESGNEEIKKIAPSMLEEKKIKNNQL-----------AFALSLFNG 52

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
           V+++   ID LI   L + W F RL  +  +ILR G  E+         +II+E + +  
Sbjct: 53  VLEKINEIDALIEPHL-KDWDFKRLGSMEKAILRLGAYEIGFTP-TQNPIIINECIELGK 110

Query: 136 DFFYGDEPKFINAVLDKVSRKEEIKR 161
            +   + PKF+NA+LD +S+K   K 
Sbjct: 111 LYAEPNTPKFLNAILDSLSKKLAQKP 136


>gi|282850207|ref|ZP_06259586.1| transcription antitermination factor NusB [Veillonella parvula ATCC
           17745]
 gi|282579700|gb|EFB85104.1| transcription antitermination factor NusB [Veillonella parvula ATCC
           17745]
          Length = 134

 Score =  115 bits (290), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 33/149 (22%), Positives = 59/149 (39%), Gaps = 16/149 (10%)

Query: 10  LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF 69
           +     R  AR  A Q LY  +               +    D +    +++  +D  + 
Sbjct: 1   MVTKRNRREARQYAFQMLYANEF--------------HTNQNDVQFPEGNIHKAMDKAYA 46

Query: 70  RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIEC-HSVPVEVIIS 128
             II GV+   + ID  +     +    + LD +  SILR  V E+      +   + I+
Sbjct: 47  NSIIEGVLSNVEAIDATLQPF-CKSRKVANLDKVDRSILRIAVWEMTNKVEPLEPSIAIN 105

Query: 129 EYVCIAHDFFYGDEPKFINAVLDKVSRKE 157
           E + +A +F      K INA+LD  ++ +
Sbjct: 106 EAIQLAKEFGSDASYKLINAILDAYNKSK 134


>gi|226356156|ref|YP_002785896.1| N utilization substance protein B (Protein nusB)(NusB
           antitermination factor) [Deinococcus deserti VCD115]
 gi|259514814|sp|C1CVC5|NUSB_DEIDV RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|226318146|gb|ACO46142.1| putative N utilization substance protein B (Protein nusB)(NusB
           antitermination factor) [Deinococcus deserti VCD115]
          Length = 168

 Score =  115 bits (290), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 39/159 (24%), Positives = 63/159 (39%), Gaps = 8/159 (5%)

Query: 1   MTIQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESV 60
           MT +  +K ++    R  AR    + L++ D        +     T    A  E D    
Sbjct: 1   MT-RRREKAVQPVGTRRAAREFVFRVLFEADRGDLPLDTVF----TRAEGAMREGDDTFP 55

Query: 61  YLHVD-LEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECH 119
            L  D L +   ++ G+   +  ID  +   +   WSF ++     ++LR    ELI   
Sbjct: 56  QLSADALTFANELVRGLEKHRADIDTTLRRTI-RGWSFDQMAQTDLNVLRLATFELIYTA 114

Query: 120 SVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEE 158
             P   +I   V IA  F   D  +F+N VL  +SR  +
Sbjct: 115 E-PHPPVIESAVRIARKFGGDDSGRFVNGVLAGLSRSLQ 152


>gi|291279490|ref|YP_003496325.1| N utilization substance protein B [Deferribacter desulfuricans
           SSM1]
 gi|290754192|dbj|BAI80569.1| N utilization substance protein B [Deferribacter desulfuricans
           SSM1]
          Length = 139

 Score =  115 bits (290), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 38/147 (25%), Positives = 66/147 (44%), Gaps = 11/147 (7%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           + IAR  A + LYQ ++       +I ++       + ++ +              +   
Sbjct: 4   KSIAREKAFKMLYQAEMTNFKPDRLIKQFWELDEEKNEKVKL----------LANKLFRL 53

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
           V+D+K + D +IS  L E W+F RL   + + LR G+ EL      PV  I+ EY  +A 
Sbjct: 54  VIDKKGYADDIISKYLKEGWTFERLTETVKNTLRLGIAEL-FNTETPVYAILDEYTTLAK 112

Query: 136 DFFYGDEPKFINAVLDKVSRKEEIKRS 162
            +       F+N VL+K+ +   I+R 
Sbjct: 113 KYEDEKAASFVNGVLEKIRKDFNIERG 139


>gi|313114141|ref|ZP_07799693.1| transcription antitermination factor NusB [Faecalibacterium cf.
           prausnitzii KLE1255]
 gi|310623550|gb|EFQ06953.1| transcription antitermination factor NusB [Faecalibacterium cf.
           prausnitzii KLE1255]
          Length = 144

 Score =  115 bits (290), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 31/141 (21%), Positives = 56/141 (39%), Gaps = 13/141 (9%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           R  AR  A    +          E I+ +E      D E  V+         + + +++ 
Sbjct: 7   RREARENAFLLAFSQTFGDIPLAEAITSHEE----NDEEHPVDG--------FSKHLLNA 54

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
             D    +D  I + L   W+  RL  +  +ILR  V E++        V I+E V +  
Sbjct: 55  YYDHSAEVDDEIRAHL-RNWTMERLPRVSLTILRLAVAEMLFGGENKPGVAINEAVELTK 113

Query: 136 DFFYGDEPKFINAVLDKVSRK 156
            +   ++ +F+N +L  V+R 
Sbjct: 114 KYGADEDYQFVNGLLGAVARD 134


>gi|152993501|ref|YP_001359222.1| transcription antitermination protein NusB [Sulfurovum sp. NBC37-1]
 gi|166215724|sp|A6QBK6|NUSB_SULNB RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|151425362|dbj|BAF72865.1| transcription antitermination factor NusB [Sulfurovum sp. NBC37-1]
          Length = 130

 Score =  115 bits (290), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 33/140 (23%), Positives = 56/140 (40%), Gaps = 13/140 (9%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           R  AR A V  LY  D+   +  +   E        + + D           +   +  G
Sbjct: 4   RHQARTAVVGLLYAYDLGNENIAKFSDEILEEDKIRNKQRD-----------FSHDLFDG 52

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
            ++  + +D  I   LT  W +  +  +  +ILR G  E++        +II+E V +A 
Sbjct: 53  TIENLEMLDAEIEKHLT-DWDYDAIGRVEKAILRLGAYEIL-VAKTDRAIIINEAVELAK 110

Query: 136 DFFYGDEPKFINAVLDKVSR 155
                  P+FIN VLD + +
Sbjct: 111 SLADEKSPQFINGVLDAIGK 130


>gi|317010284|gb|ADU84031.1| transcription antitermination protein NusB [Helicobacter pylori
           SouthAfrica7]
          Length = 138

 Score =  115 bits (290), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 37/146 (25%), Positives = 64/146 (43%), Gaps = 13/146 (8%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           R  AR A ++ LY  +       +I       +   + +L            +   + +G
Sbjct: 4   RTQARGAVIELLYAFESGNEEIKKIAPSMLEEKKIKNNQL-----------AFALSLFNG 52

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
           V+++   ID LI   L + W F RL  +  +ILR G  E+         +II+E + +  
Sbjct: 53  VLEKINEIDALIEPHL-KDWDFKRLGSMEKAILRLGAYEIGFTP-TQNPIIINECIELGK 110

Query: 136 DFFYGDEPKFINAVLDKVSRKEEIKR 161
            +   + PKF+NA+LD +S+K   K 
Sbjct: 111 LYAEPNTPKFLNAILDSLSKKLAQKP 136


>gi|160880647|ref|YP_001559615.1| NusB antitermination factor [Clostridium phytofermentans ISDg]
 gi|189035885|sp|A9KMC2|NUSB_CLOPH RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|160429313|gb|ABX42876.1| NusB antitermination factor [Clostridium phytofermentans ISDg]
          Length = 132

 Score =  115 bits (290), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 28/138 (20%), Positives = 56/138 (40%), Gaps = 10/138 (7%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           R   R    + L++ +      TE+  +   Y        D          E+  V    
Sbjct: 3   RREIREHLFRMLFRKEF--HEPTELEEQVLFY-------FDSLESITPEQQEYLNVRFDK 53

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
           + ++   ID ++++  +  W  +R+  +  +I+R    E+     VPV+V I+E + +A 
Sbjct: 54  INEKLGEIDTILANA-SSGWKLNRMGKVDLNIMRLATFEIRFDDEVPVKVAINEAIELAK 112

Query: 136 DFFYGDEPKFINAVLDKV 153
            +       F+N +L KV
Sbjct: 113 KYGGDSSASFVNGILAKV 130


>gi|325971258|ref|YP_004247449.1| NusB antitermination factor [Spirochaeta sp. Buddy]
 gi|324026496|gb|ADY13255.1| NusB antitermination factor [Spirochaeta sp. Buddy]
          Length = 152

 Score =  115 bits (289), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 35/141 (24%), Positives = 63/141 (44%), Gaps = 7/141 (4%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           R  AR  A+Q LY +D       +++     +    + E D     + +   +   ++ G
Sbjct: 4   RHKARELALQTLYAMDFNKE--LDVLHIPAIFSGNTEEEHDQLEEEVKIYGMY---LVRG 58

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
            ++    ID LIS   +      R+D++  +ILR  V  L    ++   +II E V ++ 
Sbjct: 59  TLENLFEIDELISKY-SLNRPIERIDIVDRNILRMSVFCLRFG-NIHPHIIIDEAVKLSQ 116

Query: 136 DFFYGDEPKFINAVLDKVSRK 156
           DF      KFIN +LD + ++
Sbjct: 117 DFSTEVNYKFINGILDTMQKQ 137


>gi|238019309|ref|ZP_04599735.1| hypothetical protein VEIDISOL_01173 [Veillonella dispar ATCC 17748]
 gi|237864008|gb|EEP65298.1| hypothetical protein VEIDISOL_01173 [Veillonella dispar ATCC 17748]
          Length = 134

 Score =  115 bits (289), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 33/150 (22%), Positives = 59/150 (39%), Gaps = 18/150 (12%)

Query: 10  LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF 69
           + +   R  AR  A Q LY  +               +    D +     ++  +D  + 
Sbjct: 1   MVIKRNRREARQYAFQMLYANEF--------------HVDQNDVQFPEGHMHKSMDKAYA 46

Query: 70  RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVP--VEVII 127
             II+GV+   + ID  +     +      LD +  +ILR  + E+      P    + I
Sbjct: 47  NSIINGVLSASETIDATLQPF-CKSRKVENLDKVDRAILRIALWEMTNEAD-PLEPSIAI 104

Query: 128 SEYVCIAHDFFYGDEPKFINAVLDKVSRKE 157
           +E + +A DF      K INA+LD  ++ +
Sbjct: 105 NEAIQLAKDFGSDSSYKLINAILDAYNKSK 134


>gi|39932003|sp|Q9CHN4|NUSB_LACLA RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
          Length = 192

 Score =  115 bits (289), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 34/127 (26%), Positives = 59/127 (46%), Gaps = 1/127 (0%)

Query: 29  QIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLIS 88
           Q+     +    +SE            D +        E+F  ++ GV+D+K+ ++  IS
Sbjct: 67  QLAQAENNAQSQLSELLKNTKRFVLNYDNDRPEDLEAPEYFTQLVDGVLDKKEDLEANIS 126

Query: 89  SCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINA 148
             LT+ WSFSRL ++  +IL+    E++     P  V ++E V ++ DF      +FIN 
Sbjct: 127 KYLTKTWSFSRLTLVEQAILQVSSYEILYT-ETPDVVAVNEAVELSKDFSDEKSSRFING 185

Query: 149 VLDKVSR 155
           VL    +
Sbjct: 186 VLTNFLK 192


>gi|157738073|ref|YP_001490757.1| transcription antitermination protein NusB [Arcobacter butzleri
           RM4018]
 gi|315636425|ref|ZP_07891669.1| transcription antitermination factor NusB [Arcobacter butzleri
           JV22]
 gi|166918802|sp|A8EVW4|NUSB_ARCB4 RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|157699927|gb|ABV68087.1| transcription termination factor NusB [Arcobacter butzleri RM4018]
 gi|315479291|gb|EFU69980.1| transcription antitermination factor NusB [Arcobacter butzleri
           JV22]
          Length = 131

 Score =  115 bits (289), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 34/140 (24%), Positives = 62/140 (44%), Gaps = 13/140 (9%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           R  AR + +  LY  D+     T+ + E    +   + + D           +   + +G
Sbjct: 4   RTQARESVIGLLYAYDLGNDGITKFVDEILEEKKIRNNQKD-----------FALNLFNG 52

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
            +     ID  I S L +  + S +  +  SILR  + E++   S+P  +II+E + ++ 
Sbjct: 53  TIKNLSQIDENIVSNLNQG-TLSDIGSVEKSILRLAIYEILF-ESLPKAIIINEAIELSK 110

Query: 136 DFFYGDEPKFINAVLDKVSR 155
                  PKFIN +LDK+ +
Sbjct: 111 RLASDGAPKFINGLLDKIVK 130


>gi|325283641|ref|YP_004256182.1| NusB antitermination factor [Deinococcus proteolyticus MRP]
 gi|324315450|gb|ADY26565.1| NusB antitermination factor [Deinococcus proteolyticus MRP]
          Length = 185

 Score =  115 bits (289), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 32/161 (19%), Positives = 61/161 (37%), Gaps = 6/161 (3%)

Query: 1   MTIQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESV 60
           MT +  ++    +  R  AR  A +AL++ +       ++           D  L   + 
Sbjct: 1   MT-RRRERSAAPTGSRRAAREFAFRALFESERGELPLEQVFMRTAAQMHEGDETLTPLTP 59

Query: 61  YLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHS 120
                + + R +  G+      +   +   +   WSF ++     ++LR    E++    
Sbjct: 60  DA---IAFARSLAEGLDMHWDEVQAALQRTI-RGWSFEQMAQTDLNVLRLAAFEMMFTPE 115

Query: 121 VPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKR 161
            P   +I   V IA  F   D  +F+N VL  +SR  E + 
Sbjct: 116 -PHPPVIESAVRIARKFGGEDSGRFVNGVLGTLSRSLEGQP 155


>gi|294791859|ref|ZP_06757007.1| transcription antitermination factor NusB [Veillonella sp. 6_1_27]
 gi|294457089|gb|EFG25451.1| transcription antitermination factor NusB [Veillonella sp. 6_1_27]
          Length = 134

 Score =  115 bits (289), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 34/149 (22%), Positives = 59/149 (39%), Gaps = 16/149 (10%)

Query: 10  LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF 69
           +     R  AR  A Q LY  +               +    D +    +++  +D  + 
Sbjct: 1   MVTKRNRREARQYAFQMLYANEF--------------HTDQNDVQFPEGNIHKAMDKAYA 46

Query: 70  RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIEC-HSVPVEVIIS 128
             II GV+   + ID  +     +    + LD +  SILR  V E+      +   + I+
Sbjct: 47  NSIIEGVLSNVEAIDATLQPF-CKSRKVANLDKVDRSILRIAVWEMTNKVEPLEPSIAIN 105

Query: 129 EYVCIAHDFFYGDEPKFINAVLDKVSRKE 157
           E + +A DF      K INA+LD  ++ +
Sbjct: 106 EAIQLAKDFGSDASYKLINAILDAYNKSK 134


>gi|241889927|ref|ZP_04777225.1| transcription antitermination factor NusB [Gemella haemolysans ATCC
           10379]
 gi|241863549|gb|EER67933.1| transcription antitermination factor NusB [Gemella haemolysans ATCC
           10379]
          Length = 131

 Score =  115 bits (289), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 32/142 (22%), Positives = 63/142 (44%), Gaps = 18/142 (12%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           R   R A  + L+Q++       E++            +L+ E +   +   +    +  
Sbjct: 4   RHELREAVFKILFQVENTELDFIELL------------DLEQEEISTSI---YVNKTLTE 48

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
           ++++K+ ID +IS+ L + W   RL  +   ILR    E++    +P +V I+E V ++ 
Sbjct: 49  ILEKKEEIDEIISNNL-KDWKLERLSKMDRQILRISAYEILYS-DIPYKVSINEAVELSK 106

Query: 136 DFFY-GDEPKFINAVLDKVSRK 156
            +    +  KFIN VL  +   
Sbjct: 107 KYSEKDESYKFINGVLKGIVEN 128


>gi|294790502|ref|ZP_06755660.1| transcription antitermination factor NusB [Scardovia inopinata
           F0304]
 gi|294458399|gb|EFG26752.1| transcription antitermination factor NusB [Scardovia inopinata
           F0304]
          Length = 176

 Score =  115 bits (289), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 33/147 (22%), Positives = 60/147 (40%), Gaps = 12/147 (8%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           R  AR  A+  LY+ D  G     ++ E   +                    + + II G
Sbjct: 3   RSTARKRALNTLYEADEKGQEILPLLDERLAFPGAQTPLP-----------AYAQDIIRG 51

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
           V   ++ ID  I+   +  W   R+ ++  +I R    E++    V  +V I E + +A 
Sbjct: 52  VASHRRTIDRAINEH-STGWDVKRMHVLDRNIARIAAWEIVYNDEVLAKVAIDEALGLAK 110

Query: 136 DFFYGDEPKFINAVLDKVSRKEEIKRS 162
            +  G+ P F++ +L  + R  E  R+
Sbjct: 111 IYSDGEAPNFLHGLLSAIERDAESIRT 137


>gi|332184492|gb|AEE26746.1| Transcription termination protein NusB [Francisella cf. novicida
           3523]
          Length = 141

 Score =  115 bits (289), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 42/153 (27%), Positives = 69/153 (45%), Gaps = 13/153 (8%)

Query: 10  LKLSHR-RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEW 68
           +K + R R  ARL  VQALYQ  +   +  E+  +Y              +   + D + 
Sbjct: 1   MKTTARARNNARLYTVQALYQKRVADNTFAELKVQYYA----------DNADRHYTDWDL 50

Query: 69  FRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIIS 128
           F  +I  V   +  ID  I          + ++ +  ++L+A + ELIEC   P +VII 
Sbjct: 51  FYRLIDAVKSNQDIIDKYIQENSNNG--VASINYVDYAVLQAAIAELIECLENPYQVIIK 108

Query: 129 EYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKR 161
           EYV I +     +  KF+NAVL  +++    + 
Sbjct: 109 EYVEICYSMGTEEGYKFVNAVLQNLAKSIRGEE 141


>gi|260438372|ref|ZP_05792188.1| transcription antitermination factor NusB [Butyrivibrio crossotus
           DSM 2876]
 gi|292808958|gb|EFF68163.1| transcription antitermination factor NusB [Butyrivibrio crossotus
           DSM 2876]
          Length = 142

 Score =  115 bits (288), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 30/144 (20%), Positives = 56/144 (38%), Gaps = 6/144 (4%)

Query: 15  RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVI-- 72
            R   R    + L++ +     +     +   +        D E  +  +D +    I  
Sbjct: 2   NRTALRETVFKVLFRYEF--HDSESFAGQMNLFFAEYPESGDEEENWPALDSKSAEEITG 59

Query: 73  -IHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
            +  ++     ID +IS   +E W   R+     SI+R  V E++   ++   V ISE V
Sbjct: 60  KVTDILCHIDEIDKVISEK-SEGWDIDRIGKAELSIMRIAVYEILYDDNIENAVSISEAV 118

Query: 132 CIAHDFFYGDEPKFINAVLDKVSR 155
            +A  +       F+N VL K+ +
Sbjct: 119 KLAKKYGDEKAYGFVNGVLAKIVK 142


>gi|297559856|ref|YP_003678830.1| NusB antitermination factor [Nocardiopsis dassonvillei subsp.
           dassonvillei DSM 43111]
 gi|296844304|gb|ADH66324.1| NusB antitermination factor [Nocardiopsis dassonvillei subsp.
           dassonvillei DSM 43111]
          Length = 137

 Score =  115 bits (288), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 30/134 (22%), Positives = 62/134 (46%), Gaps = 14/134 (10%)

Query: 24  VQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHI 83
           V+ LY+ ++   S  ++I      R  A  E  +         ++   +   V +R++ I
Sbjct: 13  VEVLYEAEVRATSVEDVIR-----RRRAQPEPPIN--------DFTESLARSVDERRERI 59

Query: 84  DLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEP 143
           D L+ +     W+  R+ ++  +ILR G  EL+    +P  V I+E V +A +    + P
Sbjct: 60  DELLDTY-AIGWTLERMPVVDRNILRMGAYELLWADDIPDGVAIAEAVGVAKELSTDESP 118

Query: 144 KFINAVLDKVSRKE 157
            F++ +L ++   +
Sbjct: 119 NFVSGLLSRLMENK 132


>gi|317498987|ref|ZP_07957269.1| transcription antitermination factor NusB [Lachnospiraceae
           bacterium 5_1_63FAA]
 gi|316893736|gb|EFV15936.1| transcription antitermination factor NusB [Lachnospiraceae
           bacterium 5_1_63FAA]
          Length = 171

 Score =  115 bits (288), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 32/146 (21%), Positives = 55/146 (37%), Gaps = 10/146 (6%)

Query: 15  RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74
           +R   R    + L+ ++       E   E   +      E   + +              
Sbjct: 36  KRSEVREHIFRILFCVEFCEKEEFEDQVELYFHGHENINEKTQKEITEKT---------E 86

Query: 75  GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134
            +++    ID  IS+  T  W+  RL     SILR    E++    VP +V I+E V +A
Sbjct: 87  NLIEHLDEIDEQISAH-TNAWNLERLGKAELSILRLATYEILLDEQVPRKVAINEAVELA 145

Query: 135 HDFFYGDEPKFINAVLDKVSRKEEIK 160
             +       FIN VL K+ +  + +
Sbjct: 146 KKYCNEKAAPFINGVLSKIGQDMDEE 171


>gi|329767039|ref|ZP_08258567.1| transcription antitermination factor NusB [Gemella haemolysans
           M341]
 gi|328837764|gb|EGF87389.1| transcription antitermination factor NusB [Gemella haemolysans
           M341]
          Length = 131

 Score =  115 bits (288), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 32/142 (22%), Positives = 62/142 (43%), Gaps = 18/142 (12%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           R   R A  + L+Q++       E++            +L+ E +   +   +    +  
Sbjct: 4   RHELREAVFKILFQVENTELDFIELL------------DLEQEEISTSI---YVNKTLTE 48

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
           ++++K  ID +IS+ L + W   RL  +   ILR    E++    +P +V I+E V ++ 
Sbjct: 49  IIEKKDEIDEVISNNL-KDWKLERLSKMDRQILRISAYEILYS-DIPYKVSINEAVELSK 106

Query: 136 DFFY-GDEPKFINAVLDKVSRK 156
            +    +  KFIN VL  +   
Sbjct: 107 KYSEKDESYKFINGVLKGIVEN 128


>gi|217967431|ref|YP_002352937.1| NusB antitermination factor [Dictyoglomus turgidum DSM 6724]
 gi|254772636|sp|B8E246|NUSB_DICTD RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|217336530|gb|ACK42323.1| NusB antitermination factor [Dictyoglomus turgidum DSM 6724]
          Length = 144

 Score =  115 bits (288), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 33/151 (21%), Positives = 63/151 (41%), Gaps = 20/151 (13%)

Query: 12  LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71
           +S  R   R   ++ L+Q D+      EI  ++              S +      +   
Sbjct: 1   MSKERTRCREKVLEFLFQKDLGQ----EIEVDF--------------SDFSPQGQVFAYK 42

Query: 72  IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
           +  G +  K   D +IS   ++ W   R+  I  +ILR  + E+     +P  V ++E V
Sbjct: 43  LYDGALYYKDLADEIISKF-SKNWKLERIGTIEKNILRMAIAEMFTFSDIPQGVTVNEAV 101

Query: 132 CIAHDFFYGDEPKFINAVLDKVSRK-EEIKR 161
            +A  +   +  +FIN +L  + R  +E+K+
Sbjct: 102 ELAKKYVSPEAGRFINGILRNIVRNWDEVKK 132


>gi|160945199|ref|ZP_02092425.1| hypothetical protein FAEPRAM212_02718 [Faecalibacterium prausnitzii
           M21/2]
 gi|158442930|gb|EDP19935.1| hypothetical protein FAEPRAM212_02718 [Faecalibacterium prausnitzii
           M21/2]
 gi|295105571|emb|CBL03115.1| transcription antitermination factor NusB [Faecalibacterium
           prausnitzii SL3/3]
          Length = 148

 Score =  115 bits (288), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 31/141 (21%), Positives = 56/141 (39%), Gaps = 13/141 (9%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           R  AR  A    +          E +S +             E+   H    + R++++ 
Sbjct: 7   RREARENAFLLAFSQTFGDIPLAEALSNH------------AENDEEHPVDAFSRLLLNA 54

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
             D    +D  I S L   W+  RL  +  ++LR  V E++        V I+E V +  
Sbjct: 55  YYDHSAEVDDEIRSHL-RNWTMERLPRVSLTVLRLAVAEMLFGGENKPGVAINEAVELTK 113

Query: 136 DFFYGDEPKFINAVLDKVSRK 156
            +  G++ +F+N +L  V+R 
Sbjct: 114 KYGAGEDYQFVNGLLGAVARD 134


>gi|327399588|ref|YP_004340457.1| NusB antitermination factor [Hippea maritima DSM 10411]
 gi|327182217|gb|AEA34398.1| NusB antitermination factor [Hippea maritima DSM 10411]
          Length = 133

 Score =  115 bits (288), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 35/140 (25%), Positives = 57/140 (40%), Gaps = 14/140 (10%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           R  AR  AVQ +Y  +     +     ++  +    D            D  + + +I G
Sbjct: 3   RRKARTVAVQYIYSKEFGNEDSPYAFMDFVGHPKKED------------DKAFAKKLIDG 50

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
            +     I+ LI    +       + +I  SILR G+ EL+        V+I+EYV IA 
Sbjct: 51  TIQNLDIINNLIKKYASAGDDI--MSLIDKSILRVGIYELLFLREAHPVVVINEYVNIAK 108

Query: 136 DFFYGDEPKFINAVLDKVSR 155
           +         +NA+LDKV +
Sbjct: 109 ELSKESSKSLVNAILDKVYK 128


>gi|255325060|ref|ZP_05366166.1| transcription antitermination protein NusB [Corynebacterium
           tuberculostearicum SK141]
 gi|255297625|gb|EET76936.1| transcription antitermination protein NusB [Corynebacterium
           tuberculostearicum SK141]
          Length = 221

 Score =  115 bits (288), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 33/141 (23%), Positives = 55/141 (39%), Gaps = 7/141 (4%)

Query: 26  ALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDL 85
            LY+ +        I+ +              +   +    E+ +VI+ GV +    ID 
Sbjct: 28  ILYEAENRDVDPVAIVEDRIALA-------REDRNAVAPVAEYTQVIVKGVAEELDAIDD 80

Query: 86  LISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKF 145
            IS  L E W   R+  +  +ILR  V EL+    +P    + E V IA  +       +
Sbjct: 81  TISRFLAEDWELHRIPAVDRAILRLSVWELLFNPDIPTATAVVEGVEIASQYSNDQAAPY 140

Query: 146 INAVLDKVSRKEEIKRSGCVS 166
           I+AVLD V++    +      
Sbjct: 141 IHAVLDDVAQSRSAENPMSAE 161


>gi|148244614|ref|YP_001219308.1| N utilization substance protein B [Candidatus Vesicomyosocius
           okutanii HA]
 gi|146326441|dbj|BAF61584.1| N utilization substance protein B [Candidatus Vesicomyosocius
           okutanii HA]
          Length = 141

 Score =  115 bits (288), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 35/145 (24%), Positives = 62/145 (42%), Gaps = 16/145 (11%)

Query: 11  KLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFR 70
           K   +R   R   +QALYQ  + G    +I  ++   +               +   +F 
Sbjct: 4   KTPKQRT--RERVIQALYQYLVSGGEVFQIEQQFLNQKQG------------KISKVFFS 49

Query: 71  VIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEY 130
            +   +++ +  +D LI+S ++       L  +  SIL  G  EL     VP +V+I+E 
Sbjct: 50  DLFINILENRFVLDELITSTISRG--TEELGSVEHSILYLGTFELKFNSEVPYKVVINES 107

Query: 131 VCIAHDFFYGDEPKFINAVLDKVSR 155
           + +A  +      K IN  LDK++R
Sbjct: 108 LALAKLYGAEGSYKLINVSLDKLAR 132


>gi|304384736|ref|ZP_07367082.1| transcription antitermination factor NusB [Pediococcus acidilactici
           DSM 20284]
 gi|304328930|gb|EFL96150.1| transcription antitermination factor NusB [Pediococcus acidilactici
           DSM 20284]
          Length = 127

 Score =  115 bits (288), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 30/137 (21%), Positives = 53/137 (38%), Gaps = 11/137 (8%)

Query: 20  RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79
           R +A + ++   +   +  E + +     F      D           +   ++ GV + 
Sbjct: 2   RESAFKMIFAQSVNPDADPEELKKQVLEEFHETDVAD----------PFLDNLVTGVQEN 51

Query: 80  KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139
              I+  I   L   W+ +RL      IL+ G  E+     VP  V I+E + +A  +  
Sbjct: 52  VSSINETIGKELKAGWTVNRLANPDRVILQIGTYEIKHT-EVPNSVAINEALELAKKYTD 110

Query: 140 GDEPKFINAVLDKVSRK 156
               KFIN VL  V++ 
Sbjct: 111 EKARKFINGVLSNVAKD 127


>gi|328950344|ref|YP_004367679.1| NusB antitermination factor [Marinithermus hydrothermalis DSM
           14884]
 gi|328450668|gb|AEB11569.1| NusB antitermination factor [Marinithermus hydrothermalis DSM
           14884]
          Length = 152

 Score =  115 bits (288), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 30/146 (20%), Positives = 60/146 (41%), Gaps = 3/146 (2%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           R  AR  A + L++  +      E    + T     + +     V     L + R ++ G
Sbjct: 2   RRKARELAFKVLFEHTLGAVPLEEAWR-HATEGLVLEDDAPYGDVLDVEGLTFARRLVEG 60

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
            + + + +D  +   + E WSF ++     ++LR    E++     P   +I   V IA 
Sbjct: 61  YVAQAEAVDRALEETI-EGWSFGQMARTDLTVLRLAAYEMLYEP-TPYAPLIEVAVKIAK 118

Query: 136 DFFYGDEPKFINAVLDKVSRKEEIKR 161
            +   D  +F+N VL ++ R+ +   
Sbjct: 119 KYGGEDSGRFVNGVLGRLKRRIDAGE 144


>gi|126643397|ref|YP_001086381.1| transcription antitermination protein NusB [Acinetobacter baumannii
           ATCC 17978]
          Length = 122

 Score =  114 bits (287), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 28/103 (27%), Positives = 51/103 (49%), Gaps = 2/103 (1%)

Query: 52  DTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAG 111
           +     E+    VDL ++  ++  V+ + + +D L+   L  +     LD +  + LR G
Sbjct: 10  EARTRAENAMHKVDLNYYHELLTQVIAQHEDLDALLIPVLDRE--IDALDGVELATLRLG 67

Query: 112 VLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVS 154
             EL +   +P  V++ E + +A  F   D  K+IN VLD++S
Sbjct: 68  AYELRDHLEIPYRVVLDEAIELAKHFGGADSHKYINGVLDRLS 110


>gi|311739520|ref|ZP_07713355.1| N utilization substance protein B [Corynebacterium pseudogenitalium
           ATCC 33035]
 gi|311305336|gb|EFQ81404.1| N utilization substance protein B [Corynebacterium pseudogenitalium
           ATCC 33035]
          Length = 221

 Score =  114 bits (287), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 33/141 (23%), Positives = 55/141 (39%), Gaps = 7/141 (4%)

Query: 26  ALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDL 85
            LY+ +        I+ +              +   +    E+ +VI+ GV +    ID 
Sbjct: 28  ILYEAENRDVDPVAIVEDRIALA-------REDRNAVAPVAEYTQVIVKGVAEELDAIDD 80

Query: 86  LISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKF 145
            IS  L E W   R+  +  +ILR  V EL+    +P    + E V IA  +       +
Sbjct: 81  TISRFLAEDWELHRIPAVDRAILRLSVWELLFNPDIPTATAVVEGVEIASQYSNDQAAPY 140

Query: 146 INAVLDKVSRKEEIKRSGCVS 166
           I+AVLD V++    +      
Sbjct: 141 IHAVLDDVAQSRSAENPMSAE 161


>gi|218296634|ref|ZP_03497352.1| NusB antitermination factor [Thermus aquaticus Y51MC23]
 gi|218242947|gb|EED09480.1| NusB antitermination factor [Thermus aquaticus Y51MC23]
          Length = 151

 Score =  114 bits (287), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 29/143 (20%), Positives = 55/143 (38%), Gaps = 4/143 (2%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           R  AR  A++AL+     G    E +            E           + + R ++ G
Sbjct: 2   RRRARELAMRALFAHTQGGVDLEEALR--HALEEMGGEEEPYGDPLDEEGVVFARRLLLG 59

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
               ++ +D ++     E W F ++     +ILR    E++     P   +I   V IA+
Sbjct: 60  YKAHQEEVDRILKET-VEGWDFGQMAKTDLTILRLATYEMLYEP-TPFAPLIEVAVKIAN 117

Query: 136 DFFYGDEPKFINAVLDKVSRKEE 158
            +       F+N VL ++ R+ +
Sbjct: 118 RYGGEHSGAFVNGVLGRLYRRIQ 140


>gi|326406239|gb|ADZ63310.1| transcription antitermination factor [Lactococcus lactis subsp.
           lactis CV56]
          Length = 323

 Score =  114 bits (287), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 34/127 (26%), Positives = 59/127 (46%), Gaps = 1/127 (0%)

Query: 29  QIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLIS 88
           Q+     +    +SE            D +        E+F  ++ GV+D+K+ ++  IS
Sbjct: 198 QLAQAENNAQSQLSELLKNTKRFVLNYDNDRPEDLEAPEYFTQLVDGVLDKKEDLEANIS 257

Query: 89  SCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINA 148
             LT+ WSFSRL ++  +IL+    E++     P  V ++E V ++ DF      +FIN 
Sbjct: 258 KYLTKTWSFSRLTLVEQAILQVSSYEILYT-ETPDVVAVNEAVELSKDFSDEKSSRFING 316

Query: 149 VLDKVSR 155
           VL    +
Sbjct: 317 VLTNFLK 323


>gi|281491193|ref|YP_003353173.1| transcription antitermination factor [Lactococcus lactis subsp.
           lactis KF147]
 gi|281374934|gb|ADA64452.1| Transcription antitermination factor [Lactococcus lactis subsp.
           lactis KF147]
          Length = 323

 Score =  114 bits (287), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 33/127 (25%), Positives = 58/127 (45%), Gaps = 1/127 (0%)

Query: 29  QIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLIS 88
           Q+     +    +SE            D +        E+F  ++ GV+D+K+ ++  IS
Sbjct: 198 QLAQAENNAQSQLSELLKNTKRFVLNYDNDRPEDLEAPEYFTQLVDGVLDKKEDLEANIS 257

Query: 89  SCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINA 148
             L + WSFSRL ++  +IL+    E++     P  V ++E V ++ DF      +FIN 
Sbjct: 258 KYLAKTWSFSRLTLVEQAILQVSSYEILYT-ETPDVVAVNEAVELSKDFSDEKSSRFING 316

Query: 149 VLDKVSR 155
           VL    +
Sbjct: 317 VLTNFLK 323


>gi|23296076|gb|AAN12293.1| transcription termination factor [Aquifex pyrophilus]
          Length = 144

 Score =  114 bits (287), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 40/152 (26%), Positives = 60/152 (39%), Gaps = 13/152 (8%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           R  AR  A   LY+ D+ G   +EI  E    +   +              E+ + ++  
Sbjct: 4   RKSARDTAFLVLYRWDLRGDKPSEIFKEVVEEKNIQNKNT----------YEYAKKLVET 53

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSV-PVEVIISEYVCIA 134
            ++    ID +I   L + WS  RL  +  + LR GV EL+   S  P  V I   + I 
Sbjct: 54  TVNNISEIDAIIEKHL-KGWSIDRLGYVERNALRLGVAELLFLKSQEPGRVFID-IIDIV 111

Query: 135 HDFFYGDEPKFINAVLDKVSRKEEIKRSGCVS 166
             F      KF+N VL  + R    K+   V 
Sbjct: 112 KKFTDEKAAKFVNGVLSAIYRSFLEKKKEKVK 143


>gi|15672676|ref|NP_266850.1| hypothetical protein L92686 [Lactococcus lactis subsp. lactis
           Il1403]
 gi|12723603|gb|AAK04792.1|AE006302_10 transcription termination protein NusB [Lactococcus lactis subsp.
           lactis Il1403]
          Length = 323

 Score =  114 bits (287), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 34/127 (26%), Positives = 59/127 (46%), Gaps = 1/127 (0%)

Query: 29  QIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLIS 88
           Q+     +    +SE            D +        E+F  ++ GV+D+K+ ++  IS
Sbjct: 198 QLAQAENNAQSQLSELLKNTKRFVLNYDNDRPEDLEAPEYFTQLVDGVLDKKEDLEANIS 257

Query: 89  SCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINA 148
             LT+ WSFSRL ++  +IL+    E++     P  V ++E V ++ DF      +FIN 
Sbjct: 258 KYLTKTWSFSRLTLVEQAILQVSSYEILYT-ETPDVVAVNEAVELSKDFSDEKSSRFING 316

Query: 149 VLDKVSR 155
           VL    +
Sbjct: 317 VLTNFLK 323


>gi|257439489|ref|ZP_05615244.1| transcription antitermination factor NusB [Faecalibacterium
           prausnitzii A2-165]
 gi|257198061|gb|EEU96345.1| transcription antitermination factor NusB [Faecalibacterium
           prausnitzii A2-165]
          Length = 147

 Score =  114 bits (286), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 26/142 (18%), Positives = 54/142 (38%), Gaps = 13/142 (9%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           R  AR  A    +          E +          +  +DV          + + ++  
Sbjct: 7   RREARENAFLLAFSQTFGDVPLQEALDTNNEC--GEERPVDV----------FGQRLLSA 54

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
                  +D LI   L   W+  RL  +  ++LR  + E++        V+I+E V +  
Sbjct: 55  YYSHSAEVDDLIRDHL-RNWTMERLPRVSLTVLRLALAEMLYGDERKPGVVINEAVELTK 113

Query: 136 DFFYGDEPKFINAVLDKVSRKE 157
            +   ++ +F+N +L  V+R++
Sbjct: 114 KYGADEDYQFVNGLLGAVAREQ 135


>gi|297626339|ref|YP_003688102.1| Transcription antitermination factor (N utilization substance
           protein B homolog) [Propionibacterium freudenreichii
           subsp. shermanii CIRM-BIA1]
 gi|296922104|emb|CBL56672.1| Transcription antitermination factor (N utilization substance
           protein B homolog) [Propionibacterium freudenreichii
           subsp. shermanii CIRM-BIA1]
          Length = 208

 Score =  114 bits (286), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 31/141 (21%), Positives = 62/141 (43%), Gaps = 14/141 (9%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           R  AR  A+  L+Q D+   +          +R  A      E        ++ R I+ G
Sbjct: 38  RTKARKQALDVLFQADLRNEAV---------HRTMARRTEQGEPAL----RDFTRQILDG 84

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
             +    I+  I   LT  W+  R+  +  ++ R  V EL +  ++ ++V ISE + +A+
Sbjct: 85  YSEHGHEINEHIDRALTGDWTLERMSRVDRNLARIAVWEL-DFTTIDLKVAISEAMELAN 143

Query: 136 DFFYGDEPKFINAVLDKVSRK 156
           +    +   F+N +L +++ +
Sbjct: 144 ELSNDESVTFLNGLLARIAEE 164


>gi|15605713|ref|NP_213090.1| transcription antitermination protein NusB [Aquifex aeolicus VF5]
 gi|7387972|sp|O66530|NUSB_AQUAE RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|168177029|pdb|2JR0|A Chain A, Solution Structure Of Nusb From Aquifex Aeolicus
 gi|2982871|gb|AAC06491.1| transcription termination NusB [Aquifex aeolicus VF5]
          Length = 148

 Score =  114 bits (286), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 36/141 (25%), Positives = 58/141 (41%), Gaps = 13/141 (9%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           R  AR  A   LY+ D+ G +  E+  E    +   + +            E+ + ++  
Sbjct: 4   RKGARDTAFLVLYRWDLRGENPGELFKEVVEEKNIKNKDA----------YEYAKKLVDT 53

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSV-PVEVIISEYVCIA 134
            +   + ID +I   L + WS  RL  +  + LR GV ELI   S  P  V I   V + 
Sbjct: 54  AVRHIEEIDSIIEKHL-KGWSIDRLGYVERNALRLGVAELIFLKSKEPGRVFID-IVDLV 111

Query: 135 HDFFYGDEPKFINAVLDKVSR 155
             +      KF+N VL  + +
Sbjct: 112 KKYADEKAGKFVNGVLSAIYK 132


>gi|332077717|gb|EGI88178.1| transcription antitermination factor NusB [Streptococcus pneumoniae
           GA41301]
          Length = 121

 Score =  114 bits (286), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 24/92 (26%), Positives = 45/92 (48%), Gaps = 1/92 (1%)

Query: 67  EWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVI 126
            +   ++  V  +K+ +D  I+  L   W+  RL ++  ++LR GV E+      P  V 
Sbjct: 30  AFLIDLVSDVQAKKEELDKQITQHLKAGWTIERLTLVERNLLRLGVFEITSF-DTPQLVA 88

Query: 127 ISEYVCIAHDFFYGDEPKFINAVLDKVSRKEE 158
           ++E + +A DF      +FIN +L +   +E 
Sbjct: 89  VNEAIELAKDFSDQKSARFINGLLSQFVTEEN 120


>gi|294793720|ref|ZP_06758857.1| transcription antitermination factor NusB [Veillonella sp. 3_1_44]
 gi|294455290|gb|EFG23662.1| transcription antitermination factor NusB [Veillonella sp. 3_1_44]
          Length = 134

 Score =  114 bits (286), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 33/149 (22%), Positives = 59/149 (39%), Gaps = 16/149 (10%)

Query: 10  LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF 69
           +     R  AR  A Q LY  +               +    D +    +++  +D  + 
Sbjct: 1   MVTKRNRREARQYAFQMLYANEF--------------HTDQNDVQFPEGNIHKAMDKAYA 46

Query: 70  RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIEC-HSVPVEVIIS 128
             II GV+   + ID  +     +    + LD +  SILR  V E+      +   + I+
Sbjct: 47  NSIIEGVLSNVEAIDATLQPF-CKSRKVANLDKVDRSILRIAVWEMNNKVEPLEPSIAIN 105

Query: 129 EYVCIAHDFFYGDEPKFINAVLDKVSRKE 157
           E + +A +F      K INA+LD  ++ +
Sbjct: 106 EAIQLAKEFGSDASYKLINAILDAYNKSK 134


>gi|86151316|ref|ZP_01069531.1| transcription antitermination factor NusB [Campylobacter jejuni
           subsp. jejuni 260.94]
 gi|86153756|ref|ZP_01071959.1| transcription antitermination factor NusB [Campylobacter jejuni
           subsp. jejuni HB93-13]
 gi|121612229|ref|YP_001000093.1| transcription antitermination protein NusB [Campylobacter jejuni
           subsp. jejuni 81-176]
 gi|157414677|ref|YP_001481933.1| transcription antitermination protein NusB [Campylobacter jejuni
           subsp. jejuni 81116]
 gi|283955805|ref|ZP_06373296.1| transcription antitermination factor NusB [Campylobacter jejuni
           subsp. jejuni 1336]
 gi|315123942|ref|YP_004065946.1| transcription antitermination factor NusB [Campylobacter jejuni
           subsp. jejuni ICDCCJ07001]
 gi|166215678|sp|A1VYA2|NUSB_CAMJJ RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|172047054|sp|A8FKG9|NUSB_CAMJ8 RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|85841663|gb|EAQ58910.1| transcription antitermination factor NusB [Campylobacter jejuni
           subsp. jejuni 260.94]
 gi|85842717|gb|EAQ59929.1| transcription antitermination factor NusB [Campylobacter jejuni
           subsp. jejuni HB93-13]
 gi|87250180|gb|EAQ73138.1| transcription antitermination factor NusB [Campylobacter jejuni
           subsp. jejuni 81-176]
 gi|157385641|gb|ABV51956.1| transcription termination protein [Campylobacter jejuni subsp.
           jejuni 81116]
 gi|283792760|gb|EFC31538.1| transcription antitermination factor NusB [Campylobacter jejuni
           subsp. jejuni 1336]
 gi|307747317|gb|ADN90587.1| N utilization substance protein B-like protein [Campylobacter
           jejuni subsp. jejuni M1]
 gi|315017664|gb|ADT65757.1| transcription antitermination factor NusB [Campylobacter jejuni
           subsp. jejuni ICDCCJ07001]
 gi|315932685|gb|EFV11615.1| transcription antitermination factor NusB [Campylobacter jejuni
           subsp. jejuni 327]
          Length = 132

 Score =  114 bits (286), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 33/146 (22%), Positives = 64/146 (43%), Gaps = 20/146 (13%)

Query: 16  RGIARLAAVQALYQIDIIGCS---TTEIISEYETYRFCADTELDVESVYLHVDLEWFRVI 72
           R   R + +  LY  ++   +     EI+ E +      +               +   +
Sbjct: 4   RHQVRQSVISLLYAFELNSQNNVFVDEILDEKKIRNEQKN---------------FTLNL 48

Query: 73  IHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVC 132
            HG++D   +ID  ++S L +    + L  +  +ILR G  EL+     P  ++I+E + 
Sbjct: 49  YHGILDNLNNIDETLNSFLNDN-QITALGHVERAILRLGAYELLFT-DTPSAIVINEAIE 106

Query: 133 IAHDFFYGDEPKFINAVLDKVSRKEE 158
           +A +    + PKFIN VLD + + ++
Sbjct: 107 LAKELANDNSPKFINGVLDALIKAKK 132


>gi|269797978|ref|YP_003311878.1| NusB antitermination factor [Veillonella parvula DSM 2008]
 gi|269094607|gb|ACZ24598.1| NusB antitermination factor [Veillonella parvula DSM 2008]
          Length = 134

 Score =  114 bits (286), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 33/149 (22%), Positives = 59/149 (39%), Gaps = 16/149 (10%)

Query: 10  LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF 69
           +     R  AR  A Q LY  +               +    D +    +++  +D  + 
Sbjct: 1   MVTKRNRREARQYAFQMLYANEF--------------HTDQNDVQFPEGNIHKAMDKAYA 46

Query: 70  RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIEC-HSVPVEVIIS 128
             II GV+   + ID  +     +    + LD +  SILR  V E+      +   + I+
Sbjct: 47  NSIIEGVLSNAEAIDATLQPF-CKSRKVANLDKVDRSILRIAVWEMNNKVEPLEPSIAIN 105

Query: 129 EYVCIAHDFFYGDEPKFINAVLDKVSRKE 157
           E + +A +F      K INA+LD  ++ +
Sbjct: 106 EAIQLAKEFGSDASYKLINAILDAYNKSK 134


>gi|167766576|ref|ZP_02438629.1| hypothetical protein CLOSS21_01082 [Clostridium sp. SS2/1]
 gi|167711699|gb|EDS22278.1| hypothetical protein CLOSS21_01082 [Clostridium sp. SS2/1]
          Length = 167

 Score =  114 bits (286), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 32/146 (21%), Positives = 55/146 (37%), Gaps = 10/146 (6%)

Query: 15  RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74
           +R   R    + L+ ++       E   E   +      E   + +              
Sbjct: 32  KRSEVREHIFRILFCVEFCEKEEFEDQVELYFHGHENINEKTQKEITEKT---------E 82

Query: 75  GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134
            +++    ID  IS+  T  W+  RL     SILR    E++    VP +V I+E V +A
Sbjct: 83  NLIEHLDEIDEQISAH-TNAWNLERLGKAELSILRLATYEILLDEQVPRKVAINEAVELA 141

Query: 135 HDFFYGDEPKFINAVLDKVSRKEEIK 160
             +       FIN VL K+ +  + +
Sbjct: 142 KKYCNEKAAPFINGVLSKIGQDMDEE 167


>gi|332637334|ref|ZP_08416197.1| transcription antitermination protein NusB [Weissella cibaria KACC
           11862]
          Length = 140

 Score =  114 bits (286), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 33/140 (23%), Positives = 65/140 (46%), Gaps = 8/140 (5%)

Query: 13  SHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVI 72
           S  R   R AA Q+++ + +   +  E + +          + D E  +          +
Sbjct: 3   SLNRHQLRQAAFQSVFGLAMNPDAQVEAVVQ-------QVLDGDPEITWEDELPTDLLDM 55

Query: 73  IHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVC 132
           ++G++D +   DL IS  L + W+  RL++    ++R  + E+      P ++ ++E + 
Sbjct: 56  VNGIVDHQDEFDLTISEYLADGWTIDRLNLADVVLMRVAMYEVKYA-ETPAKIAVNEALQ 114

Query: 133 IAHDFFYGDEPKFINAVLDK 152
           +AHDF      KFIN +L+K
Sbjct: 115 LAHDFTDDASRKFINGILNK 134


>gi|154483655|ref|ZP_02026103.1| hypothetical protein EUBVEN_01359 [Eubacterium ventriosum ATCC
           27560]
 gi|149735565|gb|EDM51451.1| hypothetical protein EUBVEN_01359 [Eubacterium ventriosum ATCC
           27560]
          Length = 131

 Score =  114 bits (285), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 28/139 (20%), Positives = 56/139 (40%), Gaps = 10/139 (7%)

Query: 15  RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74
            R   R    + LY  D    S  E+  +Y+ +        +        D ++    + 
Sbjct: 2   NRVKLRENTFKLLYCNDFHNRS--EMPKQYDLFW-------EETPEVSEEDRKFISNRVD 52

Query: 75  GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134
            + ++   ID  I+    + W+  R+  +  +ILR    E+     +P +V + + + +A
Sbjct: 53  AIAEKIDEIDEAINKAAVK-WTTDRMSKVDLTILRLAYYEMKIDEDIPEKVAVDQAIELA 111

Query: 135 HDFFYGDEPKFINAVLDKV 153
             +   D P F+N VL K+
Sbjct: 112 KKYGTDDSPSFVNGVLAKL 130


>gi|227534863|ref|ZP_03964912.1| transcription antitermination protein NusB [Lactobacillus paracasei
           subsp. paracasei ATCC 25302]
 gi|227187619|gb|EEI67686.1| transcription antitermination protein NusB [Lactobacillus paracasei
           subsp. paracasei ATCC 25302]
          Length = 139

 Score =  114 bits (285), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 26/108 (24%), Positives = 50/108 (46%), Gaps = 6/108 (5%)

Query: 52  DTELDVESVYLHV------DLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILC 105
           + E D ++VY  V         +   ++ GV+ ++  +D  ++  L + W+ SRL     
Sbjct: 25  NPEADKDAVYAEVLPQDTEVPAYLTTLVEGVLSKQADLDAALTPQLKKGWTLSRLTKPDL 84

Query: 106 SILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKV 153
            ILR G+ E+    ++P    I+E + +A  +      KF+N +L   
Sbjct: 85  IILRLGLYEIRYEEAMPEAAAINEAINLAKRYSDDQSAKFVNGILANF 132


>gi|167747003|ref|ZP_02419130.1| hypothetical protein ANACAC_01715 [Anaerostipes caccae DSM 14662]
 gi|317471818|ref|ZP_07931155.1| transcription antitermination factor NusB [Anaerostipes sp.
           3_2_56FAA]
 gi|167653963|gb|EDR98092.1| hypothetical protein ANACAC_01715 [Anaerostipes caccae DSM 14662]
 gi|316900709|gb|EFV22686.1| transcription antitermination factor NusB [Anaerostipes sp.
           3_2_56FAA]
          Length = 131

 Score =  114 bits (285), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 29/138 (21%), Positives = 59/138 (42%), Gaps = 10/138 (7%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           R   R    +  + ID    ++ E  ++ + Y    D        + + + ++ +     
Sbjct: 3   RSKLREQMFRLCFSIDF--HTSEEFEAQADLYFSNND-------FFRNKEKDYIKTRTLD 53

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
           ++ R + ID  I+   ++ W   RL     +ILR  V E++    +P +V I+E V ++ 
Sbjct: 54  MLSRLEEIDQKINEN-SKGWDIKRLGKAELTILRIAVYEIMFDEDIPDKVAINEAVELSK 112

Query: 136 DFFYGDEPKFINAVLDKV 153
            +       FIN +L K+
Sbjct: 113 TYCNEKAASFINGILGKI 130


>gi|167627528|ref|YP_001678028.1| transcription termination factor [Francisella philomiragia subsp.
           philomiragia ATCC 25017]
 gi|241668097|ref|ZP_04755675.1| transcription termination factor [Francisella philomiragia subsp.
           philomiragia ATCC 25015]
 gi|254876632|ref|ZP_05249342.1| transcription termination factor [Francisella philomiragia subsp.
           philomiragia ATCC 25015]
 gi|167597529|gb|ABZ87527.1| transcription termination factor [Francisella philomiragia subsp.
           philomiragia ATCC 25017]
 gi|254842653|gb|EET21067.1| transcription termination factor [Francisella philomiragia subsp.
           philomiragia ATCC 25015]
          Length = 141

 Score =  114 bits (285), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 38/153 (24%), Positives = 70/153 (45%), Gaps = 13/153 (8%)

Query: 10  LKLSHR-RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEW 68
           +K + R R  ARL  VQALYQ  +   + +E+ ++Y              +   + D + 
Sbjct: 1   MKTTARARNNARLYTVQALYQKKVADHTFSELKTQYYA----------DNAERHYTDWDL 50

Query: 69  FRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIIS 128
           F  ++  V + +  I+  I            ++ +  ++L+  + ELIEC   P ++II 
Sbjct: 51  FYRLMDAVRENQDTINNYIQDNSKNG--IESINYVDYAVLQVAIAELIECLENPYQIIIK 108

Query: 129 EYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKR 161
           EYV I +     +  KF+NAVL  +++    + 
Sbjct: 109 EYVEICYSMGTEEGYKFVNAVLQNLAKSIRGEE 141


>gi|190570484|ref|YP_001974842.1| N utilization substance protein B [Wolbachia endosymbiont of Culex
           quinquefasciatus Pel]
 gi|213019243|ref|ZP_03335050.1| N utilization substance protein B [Wolbachia endosymbiont of Culex
           quinquefasciatus JHB]
 gi|190356756|emb|CAQ54115.1| N utilization substance protein B [Wolbachia endosymbiont of Culex
           quinquefasciatus Pel]
 gi|212995352|gb|EEB55993.1| N utilization substance protein B [Wolbachia endosymbiont of Culex
           quinquefasciatus JHB]
          Length = 160

 Score =  114 bits (285), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 45/161 (27%), Positives = 74/161 (45%), Gaps = 3/161 (1%)

Query: 3   IQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYL 62
           +++   D K   +R  AR  AVQ  Y    +  + +    E    +    T  D+     
Sbjct: 1   MEEKPVDKKWRIKRSTARFLAVQIAYSNIFVSYNKSTFKLENCELKDYISTLKDIFECE- 59

Query: 63  HVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVP 122
             + ++   ++  V+   +  D +I S L   WS SRL++I  SILR  V ELI+    P
Sbjct: 60  EFEHQFLENLLCKVIKSSEEYDKIIESYLHPSWSLSRLNLISLSILRIAVCELIDF-DTP 118

Query: 123 VEVIISEYVCIAHDFFY-GDEPKFINAVLDKVSRKEEIKRS 162
             ++I+EY  IA D     ++  FIN +LDKV     + ++
Sbjct: 119 APIVINEYTNIASDLLDAPNKIGFINGLLDKVKDAVRLNKN 159


>gi|116495122|ref|YP_806856.1| transcription antitermination protein NusB [Lactobacillus casei
           ATCC 334]
 gi|122263461|sp|Q038F8|NUSB_LACC3 RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|116105272|gb|ABJ70414.1| NusB antitermination factor [Lactobacillus casei ATCC 334]
          Length = 135

 Score =  113 bits (284), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 26/108 (24%), Positives = 50/108 (46%), Gaps = 6/108 (5%)

Query: 52  DTELDVESVYLHV------DLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILC 105
           + E D ++VY  V         +   ++ GV+ ++  +D  ++  L + W+ SRL     
Sbjct: 21  NPEADKDAVYAEVLPQDTEVPAYLTTLVEGVLSKQADLDAALTPQLKKGWTLSRLTKPDL 80

Query: 106 SILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKV 153
            ILR G+ E+    ++P    I+E + +A  +      KF+N +L   
Sbjct: 81  IILRLGLYEIRYEEAMPEAAAINEAINLAKRYSDDQSAKFVNGILANF 128


>gi|154149182|ref|YP_001405652.1| transcription antitermination protein NusB [Campylobacter hominis
           ATCC BAA-381]
 gi|166215676|sp|A7HZG1|NUSB_CAMHC RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|153805191|gb|ABS52198.1| transcription antitermination factor NusB [Campylobacter hominis
           ATCC BAA-381]
          Length = 131

 Score =  113 bits (284), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 34/140 (24%), Positives = 63/140 (45%), Gaps = 14/140 (10%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           R   R A V  LY  ++ G    + +SEY   +   + +            ++   + +G
Sbjct: 4   RHQVRNAVVSLLYAKEM-GSEMNDFVSEYLEEKRIRNDQ-----------RKFADKLFNG 51

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
           V      ID  +   L E +  S++  +  +ILR G  E++   ++   +II+E + +A 
Sbjct: 52  VCKNVNQIDNELDKYLNE-YKISQIGTVERAILRLGAYEIMY-EAIDKAIIINEAIELAK 109

Query: 136 DFFYGDEPKFINAVLDKVSR 155
           +      PKFIN VLD++ +
Sbjct: 110 ELAGESSPKFINGVLDRIGK 129


>gi|283955145|ref|ZP_06372647.1| transcription antitermination factor NusB [Campylobacter jejuni
           subsp. jejuni 414]
 gi|283793358|gb|EFC32125.1| transcription antitermination factor NusB [Campylobacter jejuni
           subsp. jejuni 414]
          Length = 132

 Score =  113 bits (284), Expect = 9e-24,   Method: Composition-based stats.
 Identities = 33/143 (23%), Positives = 63/143 (44%), Gaps = 14/143 (9%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           R   R + +  LY  ++   +   I             E+  E    +    +   + HG
Sbjct: 4   RHQVRQSVISLLYAFELNSQNDVFI------------DEILDEKKIRNEQKNFTLNLYHG 51

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
           ++D   +ID  ++S L +    + L  +  +ILR G  EL+     P  ++I+E + +A 
Sbjct: 52  ILDNLSNIDETLNSFLNDN-QITALGHVERAILRLGAYELLFS-DTPSAIVINEAIELAK 109

Query: 136 DFFYGDEPKFINAVLDKVSRKEE 158
           +    + PKFIN VLD + + ++
Sbjct: 110 ELANDNSPKFINGVLDALIKAKK 132


>gi|191638628|ref|YP_001987794.1| transcription antitermination protein NusB [Lactobacillus casei
           BL23]
 gi|238693054|sp|B3WEY5|NUSB_LACCB RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|190712930|emb|CAQ66936.1| N utilization substance protein B homolog (Protein nusB)
           [Lactobacillus casei BL23]
 gi|327382670|gb|AEA54146.1| Transcription termination protein nusB [Lactobacillus casei LC2W]
 gi|327385864|gb|AEA57338.1| Transcription termination protein nusB [Lactobacillus casei BD-II]
          Length = 135

 Score =  113 bits (283), Expect = 9e-24,   Method: Composition-based stats.
 Identities = 27/108 (25%), Positives = 50/108 (46%), Gaps = 6/108 (5%)

Query: 52  DTELDVESVYLHV------DLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILC 105
           + E D ++VY  V         +   ++ GV+ ++  +D  ++  L + WS SRL     
Sbjct: 21  NPEADKDAVYAEVLPQDTEVPAYLTTLVEGVLSKQADLDAALTPQLKKGWSLSRLTKPDL 80

Query: 106 SILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKV 153
            ILR G+ E+    ++P    I+E + +A  +      KF+N +L   
Sbjct: 81  IILRLGLYEIRYEEAMPEAAAINEAINLAKRYSDDQSAKFVNGILANF 128


>gi|57237437|ref|YP_178450.1| transcription antitermination protein NusB [Campylobacter jejuni
           RM1221]
 gi|86148965|ref|ZP_01067197.1| transcription antitermination factor NusB [Campylobacter jejuni
           subsp. jejuni CF93-6]
 gi|88597364|ref|ZP_01100599.1| transcription antitermination factor NusB [Campylobacter jejuni
           subsp. jejuni 84-25]
 gi|148926474|ref|ZP_01810157.1| transcription termination protein [Campylobacter jejuni subsp.
           jejuni CG8486]
 gi|205355968|ref|ZP_03222736.1| transcription termination protein [Campylobacter jejuni subsp.
           jejuni CG8421]
 gi|218562040|ref|YP_002343819.1| transcription antitermination protein NusB [Campylobacter jejuni
           subsp. jejuni NCTC 11168]
 gi|22095973|sp|Q9PIC0|NUSB_CAMJE RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|73621331|sp|Q5HW85|NUSB_CAMJR RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|57166241|gb|AAW35020.1| transcription antitermination factor NusB [Campylobacter jejuni
           RM1221]
 gi|85840323|gb|EAQ57580.1| transcription antitermination factor NusB [Campylobacter jejuni
           subsp. jejuni CF93-6]
 gi|88190425|gb|EAQ94399.1| transcription antitermination factor NusB [Campylobacter jejuni
           subsp. jejuni 84-25]
 gi|112359746|emb|CAL34532.1| transcription termination protein [Campylobacter jejuni subsp.
           jejuni NCTC 11168]
 gi|145844637|gb|EDK21743.1| transcription termination protein [Campylobacter jejuni subsp.
           jejuni CG8486]
 gi|205346092|gb|EDZ32727.1| transcription termination protein [Campylobacter jejuni subsp.
           jejuni CG8421]
 gi|284925653|gb|ADC28005.1| transcription antitermination protein NusB [Campylobacter jejuni
           subsp. jejuni IA3902]
 gi|315057805|gb|ADT72134.1| Transcription termination protein NusB [Campylobacter jejuni subsp.
           jejuni S3]
 gi|315926706|gb|EFV06085.1| transcription antitermination factor NusB [Campylobacter jejuni
           subsp. jejuni DFVF1099]
          Length = 132

 Score =  113 bits (283), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 32/146 (21%), Positives = 64/146 (43%), Gaps = 20/146 (13%)

Query: 16  RGIARLAAVQALYQIDIIGCS---TTEIISEYETYRFCADTELDVESVYLHVDLEWFRVI 72
           R   R + +  LY  ++   +     EI+ E +      +               +   +
Sbjct: 4   RHQVRQSVISLLYAFELNSQNNVFVDEILDEKKIRNEQKN---------------FTLNL 48

Query: 73  IHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVC 132
            +G++D   +ID  ++S L +    + L  +  +ILR G  EL+     P  ++I+E + 
Sbjct: 49  YNGILDNLNNIDETLNSFLNDN-QITALGHVERAILRLGAYELLFT-DTPSAIVINEAIE 106

Query: 133 IAHDFFYGDEPKFINAVLDKVSRKEE 158
           +A +    + PKFIN VLD + + ++
Sbjct: 107 LAKELANDNSPKFINGVLDALIKAKK 132


>gi|114776397|ref|ZP_01451442.1| transcription antitermination protein NusB [Mariprofundus
           ferrooxydans PV-1]
 gi|114553227|gb|EAU55625.1| transcription antitermination protein NusB [Mariprofundus
           ferrooxydans PV-1]
          Length = 145

 Score =  113 bits (283), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 32/146 (21%), Positives = 59/146 (40%), Gaps = 15/146 (10%)

Query: 14  HRRGIARLAAVQALYQIDIIGCS---TTEIISEYETYRFCADTELDVESVYLHVDLEWFR 70
             R  AR + ++ LY             E+++    +   AD            D  + R
Sbjct: 2   ANRHQARESVLETLYAWSSAQQDSGMIPELLASRLQHEERADQ-----------DESYLR 50

Query: 71  VIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEY 130
             ++G+ D    +D LI +      S   +  I  +++R  V E+     +P  VII+E 
Sbjct: 51  EAVYGITDHTDALDELIKTA-VRGRSLRSVAQIEINVIRLAVWEMQNRLEIPYRVIINEA 109

Query: 131 VCIAHDFFYGDEPKFINAVLDKVSRK 156
           + +  D+       FIN VLD ++++
Sbjct: 110 LELTRDYAGEPPRGFINGVLDNLAKQ 135


>gi|291562672|emb|CBL41488.1| transcription antitermination factor NusB [butyrate-producing
           bacterium SS3/4]
          Length = 139

 Score =  112 bits (282), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 27/104 (25%), Positives = 48/104 (46%), Gaps = 1/104 (0%)

Query: 53  TELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGV 112
            E+  +      D  +    +  +M+    ID  I+  + E W   R+  +  +ILR  V
Sbjct: 35  DEILHDPFEKEEDRAYLEKRVEKIMELIPEIDEKINE-IAEGWRTRRMGKVELTILRLAV 93

Query: 113 LELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRK 156
            E+     +P +V I+E V +A  F   + P F+N +L K+ +K
Sbjct: 94  FEMKYDEEIPEKVAINEAVELAKKFGGDEAPAFVNGILAKLIQK 137


>gi|227833206|ref|YP_002834913.1| N utilization substance protein B [Corynebacterium aurimucosum ATCC
           700975]
 gi|262184192|ref|ZP_06043613.1| N utilization substance protein B [Corynebacterium aurimucosum ATCC
           700975]
 gi|259514808|sp|C3PGM1|NUSB_CORA7 RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|227454222|gb|ACP32975.1| N utilization substance protein B [Corynebacterium aurimucosum ATCC
           700975]
          Length = 176

 Score =  112 bits (282), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 30/145 (20%), Positives = 60/145 (41%), Gaps = 7/145 (4%)

Query: 26  ALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDL 85
            L++ +        I+ +        D E  V  +      ++ R I+ G  +    ID 
Sbjct: 24  ILFEAESRDVDPVAIVEDRVE--LARDPENGVAPI-----ADYTREIVSGAAEELDAIDD 76

Query: 86  LISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKF 145
            I+  L+ +WS  R+  +  +I+R  V E++    VP    + E V +A ++       +
Sbjct: 77  AIARYLSSEWSLERIPAVDRAIMRVSVWEILFNADVPNATALVEGVELASEYSNDKAAPY 136

Query: 146 INAVLDKVSRKEEIKRSGCVSAITQ 170
           I+AVLD V + +        ++  +
Sbjct: 137 IHAVLDDVIQAQSADSPMAPASAEE 161


>gi|229552487|ref|ZP_04441212.1| transcription antitermination protein NusB [Lactobacillus rhamnosus
           LMS2-1]
 gi|229314039|gb|EEN80012.1| transcription antitermination protein NusB [Lactobacillus rhamnosus
           LMS2-1]
          Length = 139

 Score =  112 bits (282), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 28/108 (25%), Positives = 50/108 (46%), Gaps = 6/108 (5%)

Query: 52  DTELDVESVYLHV---DLE---WFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILC 105
           + E D  +VY  V   D E   +   ++ GV+  +  +D  ++  L + W+ SRL     
Sbjct: 25  NPEADKNAVYAEVLPKDTEVPSYLTALVEGVLANQAALDAALTPQLKKGWTLSRLTKPDL 84

Query: 106 SILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKV 153
            ILR G+ E+    ++P    I+E + +A  +      KF+N +L   
Sbjct: 85  IILRLGLYEIRYEEAMPEAAAINEAINLAKRYSDEQSAKFVNGILANF 132


>gi|308272930|emb|CBX29534.1| N utilization substance protein B homolog [uncultured
           Desulfobacterium sp.]
          Length = 90

 Score =  112 bits (282), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 24/80 (30%), Positives = 42/80 (52%), Gaps = 3/80 (3%)

Query: 82  HIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGD 141
            ID +I    +  W  SR+  +  +I+R  V EL+ C  +P +V I+E + I   +   +
Sbjct: 6   EIDGIIERF-SSNWKISRMSCVDRNIMRIAVFELVWCDDIPCKVSINEAIDIGKKYGTDE 64

Query: 142 EPKFINAVLDKV--SRKEEI 159
              FIN +LD V  + ++E+
Sbjct: 65  SGPFINGILDSVRDAVEKEV 84


>gi|296113998|ref|YP_003627936.1| transcription termination/antitermination protein NusB [Moraxella
           catarrhalis RH4]
 gi|295921692|gb|ADG62043.1| transcription termination/antitermination protein NusB [Moraxella
           catarrhalis RH4]
 gi|326565100|gb|EGE15293.1| transcription termination/antitermination protein NusB [Moraxella
           catarrhalis 46P47B1]
 gi|326567268|gb|EGE17388.1| transcription termination/antitermination protein NusB [Moraxella
           catarrhalis 12P80B1]
 gi|326568226|gb|EGE18308.1| transcription termination/antitermination protein NusB [Moraxella
           catarrhalis BC8]
 gi|326569926|gb|EGE19973.1| transcription termination/antitermination protein NusB [Moraxella
           catarrhalis BC1]
 gi|326573689|gb|EGE23647.1| transcription termination/antitermination protein NusB [Moraxella
           catarrhalis O35E]
          Length = 175

 Score =  112 bits (282), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 38/144 (26%), Positives = 67/144 (46%), Gaps = 8/144 (5%)

Query: 17  GIARLAAVQALYQIDIIGCSTT----EIISEYETYRFCADTELDVESVYLHVDLEWFRVI 72
             AR  AVQ LY+  +          +++   E +   A T  D  +    V L ++  +
Sbjct: 26  RKARRFAVQGLYEWLMTDYRFAKQRRDLLGGNEPHTIAARTRAD--NAMHTVHLGYYHEL 83

Query: 73  IHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVC 132
           +  +  +   ++ LI S L  +   S+LD+I  +IL  G  EL     +P +V++ E + 
Sbjct: 84  MRNIPAQIDELESLIVSQLDRE--LSKLDIIEHAILLIGTYELKHSLHIPYKVVLDEAMK 141

Query: 133 IAHDFFYGDEPKFINAVLDKVSRK 156
           +   F   D  K INAV+DK+++ 
Sbjct: 142 LNVHFGATDAHKLINAVMDKIAKN 165


>gi|256028476|ref|ZP_05442310.1| transcription antitermination protein NusB [Fusobacterium sp. D11]
 gi|289766397|ref|ZP_06525775.1| transcription antitermination protein NusB [Fusobacterium sp. D11]
 gi|289717952|gb|EFD81964.1| transcription antitermination protein NusB [Fusobacterium sp. D11]
          Length = 157

 Score =  112 bits (282), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 36/165 (21%), Positives = 79/165 (47%), Gaps = 8/165 (4%)

Query: 1   MTIQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESV 60
           M+    +++ K      +AR    + ++  ++ G S+ E+  ++  Y      + +  + 
Sbjct: 1   MSKNFEEQEKKAKGGIRLAREEVFKLVFGAELTGSSSDELKQDFNIYL---QNDEEFINA 57

Query: 61  YLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHS 120
                LE+ +  I+G+++   +I  +I    T+ W++ R+ +I  S+L  G  E +   +
Sbjct: 58  LSEKQLEFIKNSINGIVENYDNIKDIIKKN-TQNWTYERIGVIERSLLIVGTYEFL-IKN 115

Query: 121 VPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRSGCV 165
            P+EVI +E V +A ++      +FIN +L  +   E+ K  G +
Sbjct: 116 TPIEVIANEIVELAKEYGNEKSYEFINGILANI---EKAKNKGTI 157


>gi|332975638|gb|EGK12527.1| NusB antitermination factor [Psychrobacter sp. 1501(2011)]
          Length = 244

 Score =  112 bits (281), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 30/145 (20%), Positives = 61/145 (42%), Gaps = 4/145 (2%)

Query: 17  GIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADT--ELDVESVYLHVDLEWFRVIIH 74
             AR  A+Q LY+  +      +            D        +    V L ++  ++ 
Sbjct: 30  RKARRFALQGLYEWLMTDHRFEQTGKGEWKANPPHDIAARTRASNAMHTVHLGYYHTLMR 89

Query: 75  GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134
            + ++   ++ LI+  L  +    ++DM+  ++L  G  EL     +P +V++ E + + 
Sbjct: 90  EIPEQIDELEALIAEHLDRQ--IDQIDMVEHAVLLIGAYELKHSLHIPYKVVLDEAMKLN 147

Query: 135 HDFFYGDEPKFINAVLDKVSRKEEI 159
             F   D  K INAV+DK++ +   
Sbjct: 148 THFGATDAHKLINAVMDKLAAQLRA 172


>gi|118474879|ref|YP_892479.1| transcription antitermination protein NusB [Campylobacter fetus
           subsp. fetus 82-40]
 gi|166215675|sp|A0RQJ6|NUSB_CAMFF RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|118414105|gb|ABK82525.1| transcription antitermination factor NusB [Campylobacter fetus
           subsp. fetus 82-40]
          Length = 131

 Score =  112 bits (281), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 30/140 (21%), Positives = 60/140 (42%), Gaps = 14/140 (10%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           R   R + V  LY  ++ G    E  +E+   +   + +             +   + +G
Sbjct: 4   RHQVRQSVVSLLYANEM-GSEMEEFSNEFLEEKKIRNDQ-----------KSFTLTLYNG 51

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
           V+D    ID  + + L + W    +  +  +ILR G  E+    +    ++I+E + +A+
Sbjct: 52  VLDNLNLIDEALDAHLGK-WKLGEIGAVERAILRLGAYEIKFT-NTQSAIVINEAILLAN 109

Query: 136 DFFYGDEPKFINAVLDKVSR 155
           +       +FIN VLD +S+
Sbjct: 110 ELGSDSSTRFINGVLDAISK 129


>gi|317495194|ref|ZP_07953564.1| transcription antitermination factor NusB [Gemella moribillum M424]
 gi|316914616|gb|EFV36092.1| transcription antitermination factor NusB [Gemella moribillum M424]
          Length = 131

 Score =  112 bits (281), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 32/140 (22%), Positives = 56/140 (40%), Gaps = 18/140 (12%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           R   R A  + L+QI+                      EL         +  +    +  
Sbjct: 4   RHELREAVFKILFQIE---------------NTELDYKELLELEQEEIANSSYVNNTLTE 48

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
           ++D+ + ID +IS+ L + W   RL  +   ILR    E++    +P +V I+E V ++ 
Sbjct: 49  IIDKLEEIDNIISNNL-KDWKLERLSKMDRQILRISAYEILHS-DIPYKVSINEAVELSK 106

Query: 136 DFFY-GDEPKFINAVLDKVS 154
            +    +  KFIN VL  + 
Sbjct: 107 KYSEKDESYKFINGVLKGIV 126


>gi|319950547|ref|ZP_08024457.1| transcription antitermination protein NusB [Dietzia cinnamea P4]
 gi|319435797|gb|EFV91007.1| transcription antitermination protein NusB [Dietzia cinnamea P4]
          Length = 189

 Score =  112 bits (281), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 33/132 (25%), Positives = 57/132 (43%), Gaps = 10/132 (7%)

Query: 24  VQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHI 83
           V  L++ ++      ++  E           +  ES   H    +   I+ GV +R   +
Sbjct: 21  VSLLFEAELRDADVVQLAEERRR--------MGEESQEFHDVAPYTMEIVTGVAERLDRL 72

Query: 84  DLLISSCLTEKWSFSRLDMILCSILRAGVLELIE-CHSVPVEVIISEYVCIAHDFFYGDE 142
           D  IS  L  +W+  RL  +  ++LRA   EL+     V   V+I + V +  D      
Sbjct: 73  DSTISEHL-REWTLERLPAVDRAVLRAAAWELLFGSDEVDAAVVIDQAVLLVSDLSAEKS 131

Query: 143 PKFINAVLDKVS 154
             ++NAVLD+V+
Sbjct: 132 VPYVNAVLDRVA 143


>gi|253581940|ref|ZP_04859164.1| N utilization substance protein B [Fusobacterium varium ATCC 27725]
 gi|251836289|gb|EES64826.1| N utilization substance protein B [Fusobacterium varium ATCC 27725]
          Length = 132

 Score =  112 bits (281), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 31/141 (21%), Positives = 65/141 (46%), Gaps = 11/141 (7%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           R +AR    + +++ +I   +T +I+  Y         E +         + + +  ++G
Sbjct: 3   RRLAREELFKLVFEGEIKEENTKDILESYLNREEILQNENE---------IAFIKKYMNG 53

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
           + +    I  +I   +T  WSF R+  +  ++L+  V E++ C   P E++I+E V +A 
Sbjct: 54  IAENNDKILKVIEEKIT-GWSFERIGNVEKALLKISVYEIL-CEDTPYEIVINEAVELAK 111

Query: 136 DFFYGDEPKFINAVLDKVSRK 156
            +      +F+N VL K+   
Sbjct: 112 IYGDEKTSEFLNGVLAKIVNN 132


>gi|227505027|ref|ZP_03935076.1| transcription antitermination protein NusB [Corynebacterium
           striatum ATCC 6940]
 gi|227198391|gb|EEI78439.1| transcription antitermination protein NusB [Corynebacterium
           striatum ATCC 6940]
          Length = 175

 Score =  112 bits (281), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 31/142 (21%), Positives = 59/142 (41%), Gaps = 7/142 (4%)

Query: 26  ALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDL 85
            +Y+ +        II +  +     D  +   +       E+ ++I+ G  +    ID 
Sbjct: 25  IMYEAENRDVDPVAIIEDRVSLARDHDNGVAPVA-------EYTQIIVKGAAEELDVIDE 77

Query: 86  LISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKF 145
            I   L+  W   R+  +  +I+R  V E++    VP    + E V +A ++     P +
Sbjct: 78  TIERYLSADWELHRIPAVDRAIMRVAVWEILFNEDVPNATALVEGVELASEYSNDQAPPY 137

Query: 146 INAVLDKVSRKEEIKRSGCVSA 167
           I+AVLD V + +       V+A
Sbjct: 138 IHAVLDDVIQAQSADNPMSVAA 159


>gi|255323400|ref|ZP_05364531.1| transcription antitermination factor NusB [Campylobacter showae
           RM3277]
 gi|255299437|gb|EET78723.1| transcription antitermination factor NusB [Campylobacter showae
           RM3277]
          Length = 131

 Score =  112 bits (281), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 34/138 (24%), Positives = 57/138 (41%), Gaps = 14/138 (10%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           R   R A V  LY  ++  CS   +    E  +   D                   + HG
Sbjct: 4   RHQVRQAVVSLLYAREMGSCSEEFVEEFLEEKKIRNDQ------------RSLALSLFHG 51

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
           +++ +  +D L+++ L E W  + +  I  ++LR G  E+         VII+E + +  
Sbjct: 52  ILEHEDELDALLNARLKE-WKINEIGSIERAVLRLGAYEMKFTP-TDKAVIINEGIELGK 109

Query: 136 DFFYGDEPKFINAVLDKV 153
           +      PKFIN VLD +
Sbjct: 110 ELGGDSAPKFINGVLDAL 127


>gi|199597165|ref|ZP_03210597.1| transcription antitermination protein NusB [Lactobacillus rhamnosus
           HN001]
 gi|258508679|ref|YP_003171430.1| transcription antitermination protein NusB [Lactobacillus rhamnosus
           GG]
 gi|258539856|ref|YP_003174355.1| transcription antitermination protein NusB [Lactobacillus rhamnosus
           Lc 705]
 gi|199591969|gb|EDZ00044.1| transcription antitermination protein NusB [Lactobacillus rhamnosus
           HN001]
 gi|257148606|emb|CAR87579.1| N utilization substance protein B homolog [Lactobacillus rhamnosus
           GG]
 gi|257151532|emb|CAR90504.1| N utilization substance protein B homolog [Lactobacillus rhamnosus
           Lc 705]
 gi|259649985|dbj|BAI42147.1| transcription antitermination protein NusB [Lactobacillus rhamnosus
           GG]
          Length = 135

 Score =  112 bits (281), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 28/108 (25%), Positives = 50/108 (46%), Gaps = 6/108 (5%)

Query: 52  DTELDVESVYLHV---DLE---WFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILC 105
           + E D  +VY  V   D E   +   ++ GV+  +  +D  ++  L + W+ SRL     
Sbjct: 21  NPEADKNAVYAEVLPKDTEVPSYLTALVEGVLANQAALDAALTPQLKKGWTLSRLTKPDL 80

Query: 106 SILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKV 153
            ILR G+ E+    ++P    I+E + +A  +      KF+N +L   
Sbjct: 81  IILRLGLYEIRYEEAMPEAAAINEAINLAKRYSDEQSAKFVNGILANF 128


>gi|326559289|gb|EGE09716.1| transcription termination/antitermination protein NusB [Moraxella
           catarrhalis 7169]
 gi|326564337|gb|EGE14567.1| transcription termination/antitermination protein NusB [Moraxella
           catarrhalis 103P14B1]
 gi|326570003|gb|EGE20049.1| transcription termination/antitermination protein NusB [Moraxella
           catarrhalis BC7]
 gi|326572862|gb|EGE22847.1| transcription termination/antitermination protein NusB [Moraxella
           catarrhalis CO72]
 gi|326574686|gb|EGE24622.1| transcription termination/antitermination protein NusB [Moraxella
           catarrhalis 101P30B1]
          Length = 175

 Score =  112 bits (281), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 38/144 (26%), Positives = 67/144 (46%), Gaps = 8/144 (5%)

Query: 17  GIARLAAVQALYQIDIIGCSTT----EIISEYETYRFCADTELDVESVYLHVDLEWFRVI 72
             AR  AVQ LY+  +          +++   E +   A T  D  +    V L ++  +
Sbjct: 26  RKARRFAVQGLYEWLMTDYRFAKQRRDLLGGNEPHTIAARTRAD--NAMHTVHLGYYHEL 83

Query: 73  IHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVC 132
           +  +  +   ++ LI S L  +   S+LD+I  +IL  G  EL     +P +V++ E + 
Sbjct: 84  MRNIPAQIDELESLIVSQLDRE--LSKLDIIEHAILLIGTYELKHSLHIPYKVVLDEAMK 141

Query: 133 IAHDFFYGDEPKFINAVLDKVSRK 156
           +   F   D  K INAV+DK+++ 
Sbjct: 142 LNVHFGATDAHKLINAVMDKIAKN 165


>gi|257468965|ref|ZP_05633059.1| transcription antitermination protein NusB [Fusobacterium ulcerans
           ATCC 49185]
 gi|317063213|ref|ZP_07927698.1| N utilization substance protein B [Fusobacterium ulcerans ATCC
           49185]
 gi|313688889|gb|EFS25724.1| N utilization substance protein B [Fusobacterium ulcerans ATCC
           49185]
          Length = 132

 Score =  112 bits (281), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 33/139 (23%), Positives = 64/139 (46%), Gaps = 11/139 (7%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           R +AR    + +++ +I   +T +I+  Y         E +         + + +  ++G
Sbjct: 3   RRLAREELFKLVFEGEIKEENTKDILESYLKREEVLQNENE---------ITFIKKYMNG 53

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
           + +    I   I   +T  WSF R+  +  ++L+  V E++ C   P E++I+E V +A 
Sbjct: 54  IAENNDRILKTIEEKIT-GWSFERIGNVEKALLKISVYEIL-CEDTPHEIVINEAVELAK 111

Query: 136 DFFYGDEPKFINAVLDKVS 154
            +      +FIN VL KV 
Sbjct: 112 MYGDEKTSEFINGVLAKVV 130


>gi|237743358|ref|ZP_04573839.1| transcription antitermination protein NusB [Fusobacterium sp. 7_1]
 gi|229433137|gb|EEO43349.1| transcription antitermination protein NusB [Fusobacterium sp. 7_1]
          Length = 157

 Score =  112 bits (281), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 36/165 (21%), Positives = 79/165 (47%), Gaps = 8/165 (4%)

Query: 1   MTIQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESV 60
           M+    +++ K      +AR    + ++  ++ G S+ E+  ++  Y      + +  + 
Sbjct: 1   MSKNFEEQEKKAKGGIRLAREEVFKLVFGAELTGSSSDELKQDFSIYL---QNDEEFINA 57

Query: 61  YLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHS 120
                LE+ +  I+G+++   +I  +I    T+ W++ R+ +I  S+L  G  E +   +
Sbjct: 58  LSEKQLEFIKNSINGIVENYDNIKDVIKKN-TQNWTYERIGVIERSLLIVGTYEFL-IKN 115

Query: 121 VPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRSGCV 165
            P+EVI +E V +A ++      +FIN +L  +   E+ K  G +
Sbjct: 116 TPIEVIANEIVELAKEYGNEKSYEFINGILANI---EKAKNKGTI 157


>gi|291276400|ref|YP_003516172.1| transcription termination protein [Helicobacter mustelae 12198]
 gi|290963594|emb|CBG39426.1| transcription termination protein [Helicobacter mustelae 12198]
          Length = 130

 Score =  112 bits (280), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 31/140 (22%), Positives = 59/140 (42%), Gaps = 13/140 (9%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           R  AR A +  LY  DI      ++  +    +   + +             +   +  G
Sbjct: 4   RSQAREAVIGFLYAYDIGNLEIRKMAVDILEEKKIRNKQQ-----------SFALDLFDG 52

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
           ++     +D  I+  L + W F +L  +  +ILR G  E++ C  +   ++I+E + +A 
Sbjct: 53  ILKNLDLLDEQITRHL-KDWEFKKLGGMERAILRLGAYEILCCQ-IDKPIVINEAIELAK 110

Query: 136 DFFYGDEPKFINAVLDKVSR 155
            +     PK IN VLD + +
Sbjct: 111 SYGEEMAPKLINGVLDSLKK 130


>gi|290968307|ref|ZP_06559849.1| transcription antitermination factor NusB [Megasphaera genomosp.
           type_1 str. 28L]
 gi|290781666|gb|EFD94252.1| transcription antitermination factor NusB [Megasphaera genomosp.
           type_1 str. 28L]
          Length = 141

 Score =  112 bits (280), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 34/145 (23%), Positives = 60/145 (41%), Gaps = 9/145 (6%)

Query: 16  RGIARLAAVQALYQIDI-IGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74
           R   R  A++ LY  +            E   +       L  E         +   ++ 
Sbjct: 3   RHRERQEALEILYSREFHAPDDIQYAEQEIFDHTAAEARALTPER------RAYCMYLVQ 56

Query: 75  GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHS-VPVEVIISEYVCI 133
            V  RK+ +D +I S L + W   RL+    +I+R  + E+      VP  V+++E V +
Sbjct: 57  TVGARKEELDRIIGS-LAKDWDIQRLNYTEKNIMRLALCEMKYPKEPVPTAVVLNEAVLL 115

Query: 134 AHDFFYGDEPKFINAVLDKVSRKEE 158
           A ++   +  +F+N VL   SR +E
Sbjct: 116 AKEYCSSEAARFVNGVLGTYSRMKE 140


>gi|284041158|ref|YP_003391088.1| NusB antitermination factor [Spirosoma linguale DSM 74]
 gi|283820451|gb|ADB42289.1| NusB antitermination factor [Spirosoma linguale DSM 74]
          Length = 378

 Score =  112 bits (280), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 32/135 (23%), Positives = 63/135 (46%), Gaps = 6/135 (4%)

Query: 27  LYQIDIIGCSTTEI-----ISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQ 81
           L +ID+     +E+     I   ++ +     +L+  +     D  +   +    ++   
Sbjct: 227 LSEIDLSWAENSEVVRGLAIRTLKSVQSATGLQLEPLTDDWEEDELFLNTLFEKSIENDA 286

Query: 82  HIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGD 141
             + L++  L + W   R+ MI   IL+  V EL+   ++PV+V I+EY+ +A  +    
Sbjct: 287 DYEQLLADQL-KNWDVERVAMIDKIILKLAVCELLSFPNIPVKVTINEYIELAKAYSTPK 345

Query: 142 EPKFINAVLDKVSRK 156
             KF+N +LD +S K
Sbjct: 346 SGKFVNGILDNLSEK 360


>gi|227495454|ref|ZP_03925770.1| conserved hypothetical protein [Actinomyces coleocanis DSM 15436]
 gi|226831001|gb|EEH63384.1| conserved hypothetical protein [Actinomyces coleocanis DSM 15436]
          Length = 180

 Score =  112 bits (280), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 42/149 (28%), Positives = 59/149 (39%), Gaps = 7/149 (4%)

Query: 14  HRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVII 73
             R  AR  A+  +++ D  G       +E          E    +       E+   II
Sbjct: 7   SSRTRARKRAIDTIFEADQRGR------AESAAGINLMLEERKEITAAQTPLPEYSIEII 60

Query: 74  HGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCI 133
            GV D    ID L+ +  T   +FSRL  +  +ILR    E+I   +VP    I E V I
Sbjct: 61  EGVRDHLIEIDDLLDTH-TTGRTFSRLPAVDRAILRVATWEIIWNETVPDITAIDEAVRI 119

Query: 134 AHDFFYGDEPKFINAVLDKVSRKEEIKRS 162
                  D P  +NA+LD V R  +  R 
Sbjct: 120 TRKISTDDSPALVNAILDAVRRDSKNVRD 148


>gi|237736360|ref|ZP_04566841.1| transcription antitermination protein NusB [Fusobacterium
           mortiferum ATCC 9817]
 gi|229421402|gb|EEO36449.1| transcription antitermination protein NusB [Fusobacterium
           mortiferum ATCC 9817]
          Length = 132

 Score =  112 bits (280), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 34/141 (24%), Positives = 69/141 (48%), Gaps = 11/141 (7%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           R +AR    + +++ ++   ST E++  Y             E +    +L + +  ++G
Sbjct: 3   RRVAREELFKLVFESELKEESTKEVLDNYLK---------RDEVLTNENELAFIKKYMNG 53

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
           + +    I   I++ +T  WSF R+  +  ++LR  V EL+ C + P E++++E V +A 
Sbjct: 54  IAENNDRILETINNNIT-GWSFERIGNVEKALLRCSVYELL-CETTPHEIVVNEVVELAK 111

Query: 136 DFFYGDEPKFINAVLDKVSRK 156
            +      +F+N VL K+  K
Sbjct: 112 LYGDEKTSEFVNGVLAKIINK 132


>gi|320334545|ref|YP_004171256.1| NusB antitermination factor [Deinococcus maricopensis DSM 21211]
 gi|319755834|gb|ADV67591.1| NusB antitermination factor [Deinococcus maricopensis DSM 21211]
          Length = 169

 Score =  112 bits (280), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 36/168 (21%), Positives = 68/168 (40%), Gaps = 6/168 (3%)

Query: 1   MTIQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESV 60
           MT +  K     S+ R  AR  A + L++ +       E ++     R       D    
Sbjct: 1   MTRRREKASA-PSNSRRAAREFAFRVLFESERGQVPLQEALN---RARLNMAHGDDTYPE 56

Query: 61  YLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHS 120
                +++ R ++     R+  +D L++  +   W+F ++     ++LR    E++    
Sbjct: 57  LGDEAVDFARDLLGAQTARRAEVDSLLTRTI-RGWTFEQMAQTDLNVLRLATAEMLRGED 115

Query: 121 VPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRSGCVSAI 168
            P   II  +V +A  F   D  +F+N VL  VSR  E + +  +   
Sbjct: 116 -PHPPIIESFVRVARKFGGEDSGRFVNGVLSGVSRTIEEQGALPLPGP 162


>gi|291558612|emb|CBL37412.1| transcription antitermination factor NusB [butyrate-producing
           bacterium SSC/2]
          Length = 137

 Score =  112 bits (280), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 32/146 (21%), Positives = 55/146 (37%), Gaps = 10/146 (6%)

Query: 15  RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74
           +R   R    + L+ ++       E   E   +      E   + +              
Sbjct: 2   KRSEVREHIFRILFCVEFCEKEEFEDQVELYFHGHENINEKTQKEITEKT---------E 52

Query: 75  GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134
            +++    ID  IS+  T  W+  RL     SILR    E++    VP +V I+E V +A
Sbjct: 53  NLIEHLDEIDEQISAH-TNAWNLERLGKAELSILRLATYEILLDEQVPRKVAINEAVELA 111

Query: 135 HDFFYGDEPKFINAVLDKVSRKEEIK 160
             +       FIN VL K+ +  + +
Sbjct: 112 KKYCNEKAAPFINGVLSKIGQDMDEE 137


>gi|288817964|ref|YP_003432311.1| transcription antitermination factor [Hydrogenobacter thermophilus
           TK-6]
 gi|288787363|dbj|BAI69110.1| transcription antitermination factor [Hydrogenobacter thermophilus
           TK-6]
 gi|308751562|gb|ADO45045.1| NusB antitermination factor [Hydrogenobacter thermophilus TK-6]
          Length = 134

 Score =  112 bits (280), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 36/141 (25%), Positives = 61/141 (43%), Gaps = 11/141 (7%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           +  AR  A   LYQ DI      +I  EY        +E             + R ++  
Sbjct: 4   KQKARKDAFLILYQWDIKADKLEDITEEYIKSNLIKHSERR----------RYIRKLVRT 53

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
            M +   ID LIS  L+++W   R+  I  +ILR  + E++      ++ +I +YV +  
Sbjct: 54  YMQKASEIDSLISE-LSQEWDIDRMGYIERNILRVALAEILFVGVKKLKPVIMDYVKLTL 112

Query: 136 DFFYGDEPKFINAVLDKVSRK 156
            +   +  KF+N VL + + K
Sbjct: 113 KYAGKEPAKFVNGVLGRAAPK 133


>gi|238917018|ref|YP_002930535.1| N utilization substance protein B [Eubacterium eligens ATCC 27750]
 gi|238872378|gb|ACR72088.1| N utilization substance protein B [Eubacterium eligens ATCC 27750]
          Length = 135

 Score =  112 bits (280), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 31/138 (22%), Positives = 59/138 (42%), Gaps = 5/138 (3%)

Query: 20  RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79
           R    + L++   I     +   E +   + AD ++   S     +  + +     + + 
Sbjct: 2   REHIFKLLFRAPFIDN---KDEYEEQINLYFADADMVDASHLKEEEYNYIKDKTLAIAEL 58

Query: 80  KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139
              +D  I S ++E W  SRL     SI+R  V E++    +P  V ++E V +A  +  
Sbjct: 59  IPELDEKIDS-VSEGWPTSRLGKTELSIMRLAVYEMLYDEDIPTNVALNEAVELAKKYGS 117

Query: 140 GDE-PKFINAVLDKVSRK 156
            D    F+N VL K+ ++
Sbjct: 118 ADSTAAFVNGVLGKLIKE 135


>gi|313894565|ref|ZP_07828129.1| transcription antitermination factor NusB [Veillonella sp. oral
           taxon 158 str. F0412]
 gi|313440961|gb|EFR59389.1| transcription antitermination factor NusB [Veillonella sp. oral
           taxon 158 str. F0412]
          Length = 134

 Score =  111 bits (279), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 32/147 (21%), Positives = 56/147 (38%), Gaps = 16/147 (10%)

Query: 10  LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF 69
           +     R  AR  A Q LY  +               +    D +     +   +D  + 
Sbjct: 1   MVTKRNRREARQYAFQMLYANEF--------------HNDQNDVQFPEGHIQKAMDKAYA 46

Query: 70  RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIEC-HSVPVEVIIS 128
             II GV+   + ID  +     +    + LD +  +ILR  V E+      +   + I+
Sbjct: 47  NSIIQGVIATAEKIDADLQPF-CKSRKVANLDKVDRAILRIAVWEMTNEVEPLEPSIAIN 105

Query: 129 EYVCIAHDFFYGDEPKFINAVLDKVSR 155
           E + +A +F      K INA+LD  ++
Sbjct: 106 EAIQLAKEFGSDASYKLINAILDAYNK 132


>gi|326773300|ref|ZP_08232583.1| transcription antitermination factor NusB [Actinomyces viscosus
           C505]
 gi|326636530|gb|EGE37433.1| transcription antitermination factor NusB [Actinomyces viscosus
           C505]
          Length = 163

 Score =  111 bits (279), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 26/138 (18%), Positives = 57/138 (41%), Gaps = 5/138 (3%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           R  AR  A++ L++ D  G  ++E   E  ++         V S        +   I+ G
Sbjct: 23  RTKARRRAIEILFEADQRGMLSSEGSEELRSFAQLR----AVSSANHTEAPAYTGEILDG 78

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
           + D    +D  I +   + W+  R+  +  +I R    E++    V   V + E + ++ 
Sbjct: 79  LCDHLGDVDETIQTY-AQGWTLGRMPAVDRAIARVATWEIVYNDEVDAPVAVDEAMTLSR 137

Query: 136 DFFYGDEPKFINAVLDKV 153
                + P+++  +L ++
Sbjct: 138 MLSTDESPRYLGGLLGRI 155


>gi|93007217|ref|YP_581654.1| NusB antitermination factor [Psychrobacter cryohalolentis K5]
 gi|119390802|sp|Q1Q833|NUSB_PSYCK RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|92394895|gb|ABE76170.1| NusB antitermination factor [Psychrobacter cryohalolentis K5]
          Length = 315

 Score =  111 bits (279), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 31/147 (21%), Positives = 61/147 (41%), Gaps = 4/147 (2%)

Query: 17  GIARLAAVQALYQIDIIGC--STTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74
             AR  A+Q LY+  +          +                 +    V + ++  ++ 
Sbjct: 14  RKARRFAMQGLYEWLVTDRRFDIDGKLGWKANAPHDIAARTRATNAMHTVHIGYYHEMMR 73

Query: 75  GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134
            + ++   +D LIS  L  +   ++LD +  +IL  G  EL     +P +V++ E + + 
Sbjct: 74  DIPEQIDALDALISQHLDRE--INKLDTVEHAILLVGAYELQNRLEIPYKVVLDEAMKLN 131

Query: 135 HDFFYGDEPKFINAVLDKVSRKEEIKR 161
           + F   D  K INAVLD+++ +     
Sbjct: 132 NHFGATDAHKLINAVLDRMAVELRAPE 158


>gi|256425201|ref|YP_003125854.1| NusB antitermination factor [Chitinophaga pinensis DSM 2588]
 gi|256040109|gb|ACU63653.1| NusB antitermination factor [Chitinophaga pinensis DSM 2588]
          Length = 309

 Score =  111 bits (279), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 24/93 (25%), Positives = 50/93 (53%), Gaps = 1/93 (1%)

Query: 66  LEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEV 125
           LE+ R ++  V+D+K++   LI   L + W   R+  +   ++  GV E +   ++P +V
Sbjct: 205 LEYARELLLTVLDKKEYCLELIKPKL-QNWDPERIAAVDMLLMEMGVCEFLYFPTIPTKV 263

Query: 126 IISEYVCIAHDFFYGDEPKFINAVLDKVSRKEE 158
            I+EY+ +A  +      +F+N +LD + +  +
Sbjct: 264 TINEYIDLAKAYSTPQSGQFVNGILDNILKDLD 296


>gi|75764701|ref|ZP_00744117.1| N utilization substance protein B [Bacillus thuringiensis serovar
           israelensis ATCC 35646]
 gi|74487809|gb|EAO51609.1| N utilization substance protein B [Bacillus thuringiensis serovar
           israelensis ATCC 35646]
          Length = 107

 Score =  111 bits (278), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 33/115 (28%), Positives = 51/115 (44%), Gaps = 14/115 (12%)

Query: 15  RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74
           +R  AR  A+QALYQ+DI G    ++  E          E             +   ++ 
Sbjct: 2   KRRTARERAMQALYQMDITGELEPKVAVENTLDEGEETNE-------------FLESLVV 48

Query: 75  GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISE 129
           G ++ K+ ID  I   L +KW   R+ ++  SILR  V E+     +P  V I+E
Sbjct: 49  GFVENKEAIDEAIRQNL-KKWKLERISIVDRSILRVAVYEMKYMEEIPHNVTINE 102


>gi|291520794|emb|CBK79087.1| transcription antitermination factor NusB [Coprococcus catus GD/7]
          Length = 131

 Score =  111 bits (278), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 29/138 (21%), Positives = 57/138 (41%), Gaps = 10/138 (7%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           R   R    + L++ D       E + E E +      + + +       +++       
Sbjct: 3   RRELREHIFRLLFRRDF---FPEEEMKEQEAFYIEYLADPEQKE------VDYIVQKTEK 53

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
           +M     +D +++   +  W   R+  +  +I+R  V E+     +PV V I+E V +A 
Sbjct: 54  IMAMIPELDTMVNEH-SVGWQTERMGKVDLTIIRLAVYEMKYDDDIPVSVAINEAVELAK 112

Query: 136 DFFYGDEPKFINAVLDKV 153
            +   + P FIN VL K+
Sbjct: 113 RYGSENSPAFINGVLAKM 130


>gi|88607519|ref|YP_505131.1| N utilization substance protein B [Anaplasma phagocytophilum HZ]
 gi|88598582|gb|ABD44052.1| N utilization substance protein B [Anaplasma phagocytophilum HZ]
          Length = 282

 Score =  110 bits (277), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 44/144 (30%), Positives = 71/144 (49%), Gaps = 6/144 (4%)

Query: 9   DLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEW 68
           D+     +  AR  AVQ  Y + + G  T   + +   +      E+        VD + 
Sbjct: 12  DMPWHVGKTSARFLAVQGAYAM-MFGAYTASDLEDLLEHL----CEMQEVLDLHRVDKKL 66

Query: 69  FRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIIS 128
              I+  ++++   +D LIS  L EKWS  R++++  +++RAGV EL+ C      VII+
Sbjct: 67  LSKILGCMIEKCNEVDSLISVHLNEKWSMERINLVSLAVMRAGVCELL-CLKTSECVIIN 125

Query: 129 EYVCIAHDFFYGDEPKFINAVLDK 152
           EYV IA       E  F+NA+L+K
Sbjct: 126 EYVGIASTVLEKSEVNFVNAILNK 149


>gi|223041028|ref|ZP_03611286.1| transcription antitermination factor NusB [Campylobacter rectus
           RM3267]
 gi|222877700|gb|EEF12823.1| transcription antitermination factor NusB [Campylobacter rectus
           RM3267]
          Length = 131

 Score =  110 bits (277), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 34/138 (24%), Positives = 56/138 (40%), Gaps = 14/138 (10%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           R   R A V  LY  ++  CS   +    E  +   D                   + HG
Sbjct: 4   RHQVRQAVVSLLYAREMGSCSEEFVEEFLEEKKIRNDQ------------RSLALSLFHG 51

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
           +++    +D L+++ L E W  + +  I  ++LR G  E+         VII+E + +  
Sbjct: 52  ILEHADGLDALLNARLKE-WKINEIGSIERAVLRLGAYEMKFTP-TDKAVIINEGIELGK 109

Query: 136 DFFYGDEPKFINAVLDKV 153
           +      PKFIN VLD +
Sbjct: 110 ELGGDSAPKFINGVLDAL 127


>gi|291519195|emb|CBK74416.1| transcription antitermination factor NusB [Butyrivibrio
           fibrisolvens 16/4]
          Length = 140

 Score =  110 bits (277), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 29/141 (20%), Positives = 61/141 (43%), Gaps = 3/141 (2%)

Query: 15  RRGIARLAAVQALYQIDIIG-CSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVII 73
            R   R    +A++  +         +I  +   R  A+TE   ++     D E+ +   
Sbjct: 2   NRHEVRKEVFKAVFMNEFHDADDMKSVIDTFLQGRNNAETEDLAKNNKTPEDEEYIKTKS 61

Query: 74  HGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCI 133
             ++ +   ID +I+  +   W  +R+  +  +++R  + E+    ++PV V I+E V +
Sbjct: 62  EAIIAKLPEIDEMINKSVD-GWKTTRMAKVDLTLIRLALYEIKF-ENIPVGVAINEAVTL 119

Query: 134 AHDFFYGDEPKFINAVLDKVS 154
           A +F       F+N  L K+ 
Sbjct: 120 ADEFGTDSSAGFVNGALAKLV 140


>gi|46199062|ref|YP_004729.1| N utilization substance protein B-like protein [Thermus
           thermophilus HB27]
 gi|55981090|ref|YP_144387.1| N-utilization substance protein B [Thermus thermophilus HB8]
 gi|81567694|sp|Q72JL6|NUSB_THET2 RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|81600431|sp|Q5SJ93|NUSB_THET8 RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|46196686|gb|AAS81102.1| N utilization substance protein B-like protein [Thermus
           thermophilus HB27]
 gi|55772503|dbj|BAD70944.1| N-utilization substance protein B [Thermus thermophilus HB8]
          Length = 151

 Score =  110 bits (277), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 32/155 (20%), Positives = 61/155 (39%), Gaps = 7/155 (4%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           R  AR  A++AL+   + G    E              E           + + R ++ G
Sbjct: 2   RRRARELAMRALFAHTVGGMGLEEAFQ--HALEEMGGEEEGYAEPLDQEGVAFARRLLSG 59

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
               ++ +D ++     E W F ++     ++LR  V E++     P E +I   V IA+
Sbjct: 60  YKAHQEEVDRVLEET-VEGWDFRQMAKTDLAVLRLAVYEMLYEP-TPFEPLIEVAVKIAN 117

Query: 136 DFFYGDEPKFINAVLDKVSRKEEIKRSGCVSAITQ 170
            +       F+N VL +V R+     +G +  + +
Sbjct: 118 RYGGEHSGSFVNGVLARVYRRV---AAGELKTVAK 149


>gi|329121106|ref|ZP_08249737.1| transcription antitermination factor NusB [Dialister micraerophilus
           DSM 19965]
 gi|327471268|gb|EGF16722.1| transcription antitermination factor NusB [Dialister micraerophilus
           DSM 19965]
          Length = 136

 Score =  110 bits (276), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 32/142 (22%), Positives = 64/142 (45%), Gaps = 17/142 (11%)

Query: 15  RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74
           +R  +R  A++ LY  ++   +                   ++         ++   +I+
Sbjct: 5   KRRYSREYALEVLYANELNPQT--------------EKINSEIYKKLSDSGKQFAESLIN 50

Query: 75  GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVP--VEVIISEYVC 132
            V +  + IDLLI   + +KWS ++L+++  +ILR  + E++          VI +E + 
Sbjct: 51  SVRENNEEIDLLIKKHI-KKWSINQLNVVDKNILRIAIAEMLFLKDEKQEKNVIFNEAIE 109

Query: 133 IAHDFFYGDEPKFINAVLDKVS 154
           IA  +   +  KFIN +L+ VS
Sbjct: 110 IAKIYGGKNSFKFINGILESVS 131


>gi|291166741|gb|EFE28787.1| transcription antitermination factor NusB [Filifactor alocis ATCC
           35896]
          Length = 142

 Score =  110 bits (276), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 32/155 (20%), Positives = 66/155 (42%), Gaps = 18/155 (11%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           R   R  A + LY++ I      E +  Y       +               + + ++  
Sbjct: 3   RKTEREKAFKLLYEMGIKKEEEIEFLQPYLMREGLMEG--------------YVKDVLTL 48

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
               +  I   I    +++W  SR+  +  +IL+  V E++    +PV V I+E V ++ 
Sbjct: 49  YFSHRDDIMDKIQKS-SKRWDVSRMIKLDLTILKLAVTEMMYYDDIPVAVAINEAVSLSK 107

Query: 136 DFFYGDEPKFINAVLDKVS---RKEEIKRSGCVSA 167
            +   D  KFIN +L +++   ++E+++ S   +A
Sbjct: 108 KYSGEDSYKFINGILKQITIDQKEEKVELSNDSNA 142


>gi|313891837|ref|ZP_07825442.1| transcription antitermination factor NusB [Dialister
           microaerophilus UPII 345-E]
 gi|313119831|gb|EFR43018.1| transcription antitermination factor NusB [Dialister
           microaerophilus UPII 345-E]
          Length = 133

 Score =  110 bits (276), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 32/142 (22%), Positives = 64/142 (45%), Gaps = 17/142 (11%)

Query: 15  RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74
           +R  +R  A++ LY  ++   +                   ++         ++   +I+
Sbjct: 2   KRRYSREYALEVLYANELNPQT--------------EKINSEIYKKLSDSGKQFAESLIN 47

Query: 75  GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVP--VEVIISEYVC 132
            V +  + IDLLI   + +KWS ++L+++  +ILR  + E++          VI +E + 
Sbjct: 48  SVRENNEEIDLLIKKHI-KKWSINQLNVVDKNILRIAIAEMLFLKDEKQEKNVIFNEAIE 106

Query: 133 IAHDFFYGDEPKFINAVLDKVS 154
           IA  +   +  KFIN +L+ VS
Sbjct: 107 IAKIYGGKNSFKFINGILESVS 128


>gi|153952373|ref|YP_001398575.1| transcription antitermination protein NusB [Campylobacter jejuni
           subsp. doylei 269.97]
 gi|166215677|sp|A7H4Z5|NUSB_CAMJD RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|152939819|gb|ABS44560.1| transcription antitermination factor NusB [Campylobacter jejuni
           subsp. doylei 269.97]
          Length = 132

 Score =  110 bits (275), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 32/146 (21%), Positives = 65/146 (44%), Gaps = 20/146 (13%)

Query: 16  RGIARLAAVQALYQIDIIGCS---TTEIISEYETYRFCADTELDVESVYLHVDLEWFRVI 72
           R   R + +  LY  ++   +     EI+ E +      +               +   +
Sbjct: 4   RHQVRQSVISLLYAFELNSQNNVFVDEILDEKKIRNEQKN---------------FTLNL 48

Query: 73  IHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVC 132
            HG++D   +ID  ++S L +    + L  +  +ILR G  EL+   + P  ++I+E + 
Sbjct: 49  YHGILDNLNNIDETLNSFLNDN-QITALGHVERAILRLGAYELLFT-NTPSAIVINEAIE 106

Query: 133 IAHDFFYGDEPKFINAVLDKVSRKEE 158
           +A +    + PKF+N VLD + + ++
Sbjct: 107 LAKELANDNSPKFMNGVLDALIKAKK 132


>gi|332294978|ref|YP_004436901.1| NusB antitermination factor [Thermodesulfobium narugense DSM 14796]
 gi|332178081|gb|AEE13770.1| NusB antitermination factor [Thermodesulfobium narugense DSM 14796]
          Length = 134

 Score =  110 bits (275), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 36/145 (24%), Positives = 63/145 (43%), Gaps = 16/145 (11%)

Query: 10  LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF 69
           +K S R    R   ++ LY+++I   ST  ++ +        +            D E+ 
Sbjct: 1   MKKSLR--YLREMVLKILYELEINSQSTINVLMQRYAEHIQPE------------DFEFI 46

Query: 70  RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISE 129
           RV   G+++ K  ID L+   L+  W   R+ +    I+   V E+      P  + I+E
Sbjct: 47  RVRAEGIIENKDAIDKLLDE-LSIDWPTERMVVTDRLIMEIAVFEMNYLKLSP-SIAINE 104

Query: 130 YVCIAHDFFYGDEPKFINAVLDKVS 154
            V ++  +      KF+NAVL KV+
Sbjct: 105 AVELSKLYGTEKSYKFVNAVLSKVA 129


>gi|315637897|ref|ZP_07893084.1| transcription antitermination factor NusB [Campylobacter
           upsaliensis JV21]
 gi|315482009|gb|EFU72626.1| transcription antitermination factor NusB [Campylobacter
           upsaliensis JV21]
          Length = 132

 Score =  109 bits (274), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 35/145 (24%), Positives = 64/145 (44%), Gaps = 14/145 (9%)

Query: 14  HRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVII 73
             R  AR + +  LY +++ G +   I            TE   E    +    +   + 
Sbjct: 2   ASRHQARQSVISLLYALELNGKNDNFI------------TEFLQEKKIRNEAKNFTLSLY 49

Query: 74  HGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCI 133
           +GV++  Q +D  I   L E     ++  I  +ILR G  EL+   ++   ++I+E V +
Sbjct: 50  NGVLEHLQSLDERIDVFLNEN-KIHQIGHIERAILRLGAFELLHTDTL-AAIVINEAVEL 107

Query: 134 AHDFFYGDEPKFINAVLDKVSRKEE 158
           A +    + PK IN VLD + + ++
Sbjct: 108 AKEMANENAPKLINGVLDGLQKAKK 132


>gi|298346844|ref|YP_003719531.1| putative transcription antitermination protein NusB [Mobiluncus
           curtisii ATCC 43063]
 gi|298236905|gb|ADI68037.1| possible transcription antitermination protein NusB [Mobiluncus
           curtisii ATCC 43063]
          Length = 174

 Score =  109 bits (274), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 29/128 (22%), Positives = 53/128 (41%), Gaps = 8/128 (6%)

Query: 26  ALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDL 85
            LY+  + G  T E I      R         E+        +   I+ GV +  + ID 
Sbjct: 1   MLYEAHVRGWDTPEGIFSLSQLR-------QDETTAQTPLPAYAVEILEGVAEHLERIDA 53

Query: 86  LISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKF 145
            +++  ++ W   R+  +  +I+R    E++    V   V I+  + IA +    + PKF
Sbjct: 54  ALATY-SKAWPLHRMPEVDLAIMRVAAWEILFNPDVTGPVAITAAMQIAEERSTDESPKF 112

Query: 146 INAVLDKV 153
           IN +L  +
Sbjct: 113 INGLLGAI 120


>gi|163785218|ref|ZP_02179895.1| transcription antitermination protein NusB [Hydrogenivirga sp.
           128-5-R1-1]
 gi|159879514|gb|EDP73341.1| transcription antitermination protein NusB [Hydrogenivirga sp.
           128-5-R1-1]
          Length = 146

 Score =  109 bits (274), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 39/147 (26%), Positives = 62/147 (42%), Gaps = 12/147 (8%)

Query: 16  RGIARLAAVQALYQIDIIGC-STTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74
           R  AR  A++ LY  DI       E + E  +         D+        L++   II+
Sbjct: 6   RKKAREIALKVLYAYDIDKEKDINETLEETIS---------DIRQNLSEKTLKYAYQIIN 56

Query: 75  GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134
           GV +    ID +I S L + W   RL  I  ++LR G  EL+       + +  + + IA
Sbjct: 57  GVYEYIDEIDNIIQSHL-KDWRLDRLGYIERALLRIGTYELVFSDIPDKKRVFMDILDIA 115

Query: 135 HDF-FYGDEPKFINAVLDKVSRKEEIK 160
             +       KFIN VL K+ +  + +
Sbjct: 116 KCYNLDEKALKFINGVLSKIYKDFKAQ 142


>gi|57242527|ref|ZP_00370465.1| transcription antitermination factor NusB [Campylobacter
           upsaliensis RM3195]
 gi|57016812|gb|EAL53595.1| transcription antitermination factor NusB [Campylobacter
           upsaliensis RM3195]
          Length = 132

 Score =  109 bits (274), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 32/145 (22%), Positives = 64/145 (44%), Gaps = 14/145 (9%)

Query: 14  HRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVII 73
             R  AR + +  LY +++ G +    I+E+   +   +   +           +   + 
Sbjct: 2   ASRHQARQSVISLLYALELNGKN-DNFITEFLQEKKIRNEAKN-----------FTLSLY 49

Query: 74  HGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCI 133
           +GV++  Q +D  I   L E     ++  I  +ILR G  EL+   ++   ++I+E V +
Sbjct: 50  NGVLEHLQSLDECIDVFLNEN-KIHQIGHIERAILRLGAFELLHTDTL-AAIVINEAVEL 107

Query: 134 AHDFFYGDEPKFINAVLDKVSRKEE 158
             +    + PK IN VLD + +  +
Sbjct: 108 TKEMANENAPKLINGVLDGLQKAGK 132


>gi|311748704|ref|ZP_07722489.1| antitermination factor [Algoriphagus sp. PR1]
 gi|126577236|gb|EAZ81484.1| antitermination factor [Algoriphagus sp. PR1]
          Length = 394

 Score =  109 bits (274), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 37/167 (22%), Positives = 70/167 (41%), Gaps = 17/167 (10%)

Query: 1   MTIQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESV 60
           M    ++KDL  +  + + R  A              ++I+             L   ++
Sbjct: 236 MLNYFSEKDLNWTENKSVVRSLA--------------SKILKNAAQVDGSETNPLPEIAM 281

Query: 61  YLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHS 120
               D E+F+ I +  ++ +     LIS   T+ W   RL      I+   + E+    S
Sbjct: 282 NWEEDKEFFQNIFNFTLENEAESKALISQK-TKNWDIDRLAFTDKIIISMALAEMKNFPS 340

Query: 121 VPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRSGCVSA 167
           +PV+V I+EY+ I+  +      +F+N +LD +S+  E+  SG +  
Sbjct: 341 IPVKVSINEYIDISKTYSTPKSKQFVNGLLDVMSK--ELTESGQIRK 385


>gi|320450059|ref|YP_004202155.1| transcription antitermination factor NusB [Thermus scotoductus
           SA-01]
 gi|320150228|gb|ADW21606.1| transcription antitermination factor NusB [Thermus scotoductus
           SA-01]
          Length = 151

 Score =  109 bits (274), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 29/154 (18%), Positives = 58/154 (37%), Gaps = 7/154 (4%)

Query: 17  GIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGV 76
             AR  A++AL+     G    E              E           + + R ++ G 
Sbjct: 3   RRARELAMRALFAHTQGGVDLEEAFR--HALEEMGGEEDSYGDSLDQEGVAFARRLLEGY 60

Query: 77  MDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHD 136
               + +D ++     E W F+++     ++LR    E++     P   +I   V IA+ 
Sbjct: 61  KAHAEEVDQVLRDT-VEGWDFAQMSKTDLTVLRLAAYEMLYEP-TPFAPLIEVAVKIANR 118

Query: 137 FFYGDEPKFINAVLDKVSRKEEIKRSGCVSAITQ 170
           +       F+N VL ++ R+ +    G + A+ +
Sbjct: 119 YGGEHSGAFVNGVLGRLYRRIQ---GGELKAVPK 149


>gi|257460184|ref|ZP_05625288.1| transcription antitermination factor NusB [Campylobacter gracilis
           RM3268]
 gi|257442625|gb|EEV17764.1| transcription antitermination factor NusB [Campylobacter gracilis
           RM3268]
          Length = 342

 Score =  109 bits (273), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 35/138 (25%), Positives = 58/138 (42%), Gaps = 16/138 (11%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           R  ARLAA+  LY  D+ G    +   EY   +   + + +           W   ++ G
Sbjct: 4   RHQARLAAISLLYSRDMNGGG-EDFADEYLEEKRIRNEQRN-----------WTLALLRG 51

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
             +    +D LI   L E +  + +  +  +ILR G  EL         ++I+E +  A 
Sbjct: 52  ASENLAAVDALIDENLKE-FKLAEISALERAILRLGAYELRFT-DTDAGIVINEAINSAK 109

Query: 136 DFFYGDEPKFINAVLDKV 153
           +      P+FIN VLD +
Sbjct: 110 ELGI--SPRFINGVLDAL 125


>gi|227873694|ref|ZP_03991927.1| conserved hypothetical protein [Oribacterium sinus F0268]
 gi|227840462|gb|EEJ50859.1| conserved hypothetical protein [Oribacterium sinus F0268]
          Length = 185

 Score =  109 bits (273), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 30/149 (20%), Positives = 61/149 (40%), Gaps = 9/149 (6%)

Query: 15  RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELD------VESVYLHVDLEW 68
            +   R    + L+          +   +   Y +  + + D       E      +  +
Sbjct: 2   NKREERDHKFKLLFSTLFYPEEGKQ--EQLSHYSYSKEEDEDFLLPEKEEEHLSEEEEAF 59

Query: 69  FRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIIS 128
               +  +++R  H+D  I+  +TE W+ SR+     ++LR  + EL      P +V+ +
Sbjct: 60  LSQEVMKILERLPHLDERIN-AVTEGWTTSRMSKTDLTVLRLALYELEYQEETPDKVVFN 118

Query: 129 EYVCIAHDFFYGDEPKFINAVLDKVSRKE 157
           E V IA  +   D   F+N VL +++ K+
Sbjct: 119 EAVEIAKKYGGADSGSFVNGVLARITGKQ 147


>gi|157163972|ref|YP_001466235.1| transcription antitermination protein NusB [Campylobacter concisus
           13826]
 gi|166215673|sp|A7ZBS7|NUSB_CAMC1 RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|112801548|gb|EAT98892.1| transcription antitermination factor NusB [Campylobacter concisus
           13826]
          Length = 131

 Score =  109 bits (273), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 34/138 (24%), Positives = 56/138 (40%), Gaps = 14/138 (10%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           R   R A V  LY  +I   +  E   E+   +   +   +                   
Sbjct: 4   RHQVRQAIVSLLYSNEINPVTA-EFEDEFLEEKKIRNERKNEAQQTFKE----------- 51

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
           V+  K+ +D ++   L +   FS++     +ILR G+ E+         VII+E + +A 
Sbjct: 52  VLANKEKLDEILKPHLKDG-DFSKVGATELAILRLGLYEMKFSQ-TDKAVIINEAIELAK 109

Query: 136 DFFYGDEPKFINAVLDKV 153
           +      PKFIN VLDK+
Sbjct: 110 ELGSDQAPKFINGVLDKI 127


>gi|239632001|ref|ZP_04675032.1| NusB antitermination factor [Lactobacillus paracasei subsp.
           paracasei 8700:2]
 gi|239526466|gb|EEQ65467.1| NusB antitermination factor [Lactobacillus paracasei subsp.
           paracasei 8700:2]
          Length = 139

 Score =  109 bits (273), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 24/108 (22%), Positives = 49/108 (45%), Gaps = 6/108 (5%)

Query: 52  DTELDVESVYLHV------DLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILC 105
           + E D ++VY  V         +   ++  V+ ++  +D  ++  L + W+ +RL     
Sbjct: 25  NPEADKDAVYAEVLPQDTEVPAYLTTLVEAVLSKQADLDAALTPQLKKGWTLNRLTKPDL 84

Query: 106 SILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKV 153
            ILR G+ E+    ++P    I+E + +A  +      KF+N +L   
Sbjct: 85  IILRLGLYEIRYEEAMPEAAAINEAINLAKRYSDDQSAKFVNGILANF 132


>gi|42519423|ref|NP_965353.1| hypothetical protein LJ1551 [Lactobacillus johnsonii NCC 533]
 gi|227890288|ref|ZP_04008093.1| transcription antitermination protein NusB [Lactobacillus johnsonii
           ATCC 33200]
 gi|268319198|ref|YP_003292854.1| transcription antitermination factor NusB [Lactobacillus johnsonii
           FI9785]
 gi|41583711|gb|AAS09319.1| hypothetical protein LJ_1551 [Lactobacillus johnsonii NCC 533]
 gi|227849102|gb|EEJ59188.1| transcription antitermination protein NusB [Lactobacillus johnsonii
           ATCC 33200]
 gi|262397573|emb|CAX66587.1| transcription antitermination factor NusB [Lactobacillus johnsonii
           FI9785]
 gi|329667052|gb|AEB93000.1| hypothetical protein LJP_0669 [Lactobacillus johnsonii DPC 6026]
          Length = 133

 Score =  109 bits (272), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 28/138 (20%), Positives = 58/138 (42%), Gaps = 11/138 (7%)

Query: 20  RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79
           R  A+QA+Y   +          E       A        + L    ++   +++GV+  
Sbjct: 7   RRIAMQAIY---LANQGKLTDAEEVCQKALKA--------LELKDFPDYSTELVNGVLAN 55

Query: 80  KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139
           K+ +D  +S  L + W  +R++ I  +IL   + E+     +     ++E + +  +F  
Sbjct: 56  KEALDEQLSKYLKKGWRLNRINEIDLAILEVALYEMQNSKVIDPVAALNEALNLCDEFSS 115

Query: 140 GDEPKFINAVLDKVSRKE 157
            +  KFIN +L    +K+
Sbjct: 116 KESKKFINGLLANFIKKD 133


>gi|296273814|ref|YP_003656445.1| NusB antitermination factor [Arcobacter nitrofigilis DSM 7299]
 gi|296097988|gb|ADG93938.1| NusB antitermination factor [Arcobacter nitrofigilis DSM 7299]
          Length = 132

 Score =  109 bits (272), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 30/141 (21%), Positives = 63/141 (44%), Gaps = 13/141 (9%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           R  AR + +  LY  D+      + + E    +   + +            E+   + +G
Sbjct: 4   RTQARESVIGLLYAYDLGNEGIVKFVDEILEDKKIRNKQ-----------KEFALNLFNG 52

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
           V++    I+  I+  L +  +   +  +  SILR  + E++   ++   +II+E + ++ 
Sbjct: 53  VVNNYALINEHIALHLKQG-TIKDIGSVEKSILRLAIYEILF-ETLDRAIIINEAIELSK 110

Query: 136 DFFYGDEPKFINAVLDKVSRK 156
                  PKFIN VLDK++++
Sbjct: 111 RLASDGAPKFINGVLDKITKE 131


>gi|319941815|ref|ZP_08016137.1| hypothetical protein HMPREF9464_01356 [Sutterella wadsworthensis
           3_1_45B]
 gi|319804748|gb|EFW01615.1| hypothetical protein HMPREF9464_01356 [Sutterella wadsworthensis
           3_1_45B]
          Length = 173

 Score =  109 bits (272), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 38/166 (22%), Positives = 65/166 (39%), Gaps = 12/166 (7%)

Query: 1   MTIQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDV--- 57
           MT   +K   +    R +AR+ A+   YQ         + I E        D E      
Sbjct: 1   MTEA-HKPGRQAHAPRHLARVFALLGFYQWIADPTLKAQKIEENLPALLADDEEGTPVED 59

Query: 58  ----ESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVL 113
                  +   D E    ++ G +     ++   SS +       R+ ++  +IL  G  
Sbjct: 60  LGLTSEDWARCDRELLTTLLSGAIGEHAALEAEFSSFVDR--DLKRVSLVERAILFIGTY 117

Query: 114 ELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEI 159
           EL+ C   P  V+++E + +A  F  G   +F NAVL++V+ K   
Sbjct: 118 ELLRCPQTPYRVVLNETIELAKHFGSG--YRFTNAVLERVAAKVRA 161


>gi|291459867|ref|ZP_06599257.1| n utilization substance protein B [Oribacterium sp. oral taxon 078
           str. F0262]
 gi|291417657|gb|EFE91376.1| n utilization substance protein B [Oribacterium sp. oral taxon 078
           str. F0262]
          Length = 264

 Score =  109 bits (272), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 28/124 (22%), Positives = 53/124 (42%), Gaps = 4/124 (3%)

Query: 44  YETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMI 103
            +      D +   ES     +    +  + G++ R + +D  I+    E W+  R+   
Sbjct: 119 LKAEEEGDDPDPVGESGLRLSEEREIQKEVCGMVGRIEELDRRINEA-AEGWTTKRMSRT 177

Query: 104 LCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRSG 163
             ++LR  + E++    +P +V I+E V IA  +   +   F+N VL   +R    KRS 
Sbjct: 178 DLTVLRLALYEILFRDEIPDKVSINEAVDIAKKYGGAESGSFVNGVL---ARLLNPKRSA 234

Query: 164 CVSA 167
              +
Sbjct: 235 VTKS 238


>gi|301066686|ref|YP_003788709.1| transcription termination factor [Lactobacillus casei str. Zhang]
 gi|300439093|gb|ADK18859.1| Transcription termination factor [Lactobacillus casei str. Zhang]
          Length = 135

 Score =  109 bits (272), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 24/108 (22%), Positives = 49/108 (45%), Gaps = 6/108 (5%)

Query: 52  DTELDVESVYLHV------DLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILC 105
           + E D ++VY  V         +   ++  V+ ++  +D  ++  L + W+ +RL     
Sbjct: 21  NPEADKDAVYAEVLPQDTEVPAYLTTLVEAVLSKQADLDAALTPQLKKGWTLNRLTKPDL 80

Query: 106 SILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKV 153
            ILR G+ E+    ++P    I+E + +A  +      KF+N +L   
Sbjct: 81  IILRLGLYEIRYEEAMPEAAAINEAINLAKRYSDDQSAKFVNGILANF 128


>gi|237750245|ref|ZP_04580725.1| predicted protein [Helicobacter bilis ATCC 43879]
 gi|229374139|gb|EEO24530.1| predicted protein [Helicobacter bilis ATCC 43879]
          Length = 368

 Score =  109 bits (272), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 34/140 (24%), Positives = 66/140 (47%), Gaps = 13/140 (9%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           R  AR A +Q LY  ++      E    +   +   + + D           +   ++HG
Sbjct: 4   RKQAREAIIQILYAKELGNDKAIEQAEAFLNAQKIRNKQQD-----------FALNLLHG 52

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
           + + ++ I  +I+  L + W  SRL +I  +I++ GV EL++  +    VII+E + +  
Sbjct: 53  ICNEERKIADIINVFL-KSWDLSRLGVIEKNIIKLGVYELLQT-NTQKAVIINEAIELTK 110

Query: 136 DFFYGDEPKFINAVLDKVSR 155
            F   D  + +N +LD V++
Sbjct: 111 SFNVQDAFRLVNGILDSVAK 130


>gi|148654081|ref|YP_001281174.1| NusB antitermination factor [Psychrobacter sp. PRwf-1]
 gi|148573165|gb|ABQ95224.1| NusB antitermination factor [Psychrobacter sp. PRwf-1]
          Length = 252

 Score =  109 bits (272), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 30/140 (21%), Positives = 61/140 (43%), Gaps = 4/140 (2%)

Query: 17  GIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADT--ELDVESVYLHVDLEWFRVIIH 74
             AR  A+Q LY+  +      ++           D        +    V L ++  ++ 
Sbjct: 38  RKARRFALQGLYEWLMTDHRFEQMGQGEWKANPPHDIAARTRATNAMHTVHLGYYHTLMR 97

Query: 75  GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134
            + ++   ++ LI+  L    +  ++DM+  ++L  G  EL     +P +V++ E + + 
Sbjct: 98  EIPEQITDLEALIAQHLDR--AIDKIDMVEHAVLLIGAYELKNSLHIPYKVVLDEAMKLN 155

Query: 135 HDFFYGDEPKFINAVLDKVS 154
             F   D  K INAV+DK++
Sbjct: 156 THFGATDAHKLINAVMDKLA 175


>gi|210622490|ref|ZP_03293195.1| hypothetical protein CLOHIR_01143 [Clostridium hiranonis DSM 13275]
 gi|210154203|gb|EEA85209.1| hypothetical protein CLOHIR_01143 [Clostridium hiranonis DSM 13275]
          Length = 173

 Score =  108 bits (271), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 33/159 (20%), Positives = 67/159 (42%), Gaps = 25/159 (15%)

Query: 18  IARLAAVQALYQIDIIGCSTTE---------------IISEYETYRFCADTELDVESVYL 62
            +R   ++ +Y +D++    ++               I++ +E  +  +  + DV     
Sbjct: 10  TSREYMMKFIYNLDVVKDDLSDLENKVKEFLVGNEEYIVNRFEELKLQSSNDSDVHESME 69

Query: 63  ---HVDLEWFRVI--IHGVM----DRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVL 113
               +DLE +  +  +  V     ++ + ID  I     + WS   +  +  +ILR  + 
Sbjct: 70  TEEEIDLENYLNLDYVSNVCKIYEEKHEEIDEAIDKY-AKGWSIMTMPKVDVAILRLAIA 128

Query: 114 ELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDK 152
           E+    S+P +V I+E + +A  +     PKFIN VL  
Sbjct: 129 EIGFIDSIPEKVSINEAIEMAKMYCDDKSPKFINGVLGS 167


>gi|315604170|ref|ZP_07879236.1| conserved hypothetical protein [Actinomyces sp. oral taxon 180 str.
           F0310]
 gi|315313876|gb|EFU61927.1| conserved hypothetical protein [Actinomyces sp. oral taxon 180 str.
           F0310]
          Length = 208

 Score =  108 bits (271), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 37/144 (25%), Positives = 58/144 (40%), Gaps = 9/144 (6%)

Query: 16  RGIARLAAVQALYQIDIIGCSTT-EIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74
           R  AR  A   +Y+ D  G  +  + + +    R                  E+   II 
Sbjct: 10  RTKARKRAADVVYEADQRGMGSNPDALRDLLRERRVITAAQTPLP-------EFSLRIIG 62

Query: 75  GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134
           GV D  + ID LIS+         R+  +  +++R  V E++E   V   ++I E V I 
Sbjct: 63  GVADNLRRIDSLISAH-ARVPGLDRIAAVDLAVMRVAVWEMLENDEVSPIIVIDEAVSIV 121

Query: 135 HDFFYGDEPKFINAVLDKVSRKEE 158
                   P F+NAVLD + +  E
Sbjct: 122 RSISTDTSPAFVNAVLDAIRKDLE 145


>gi|116491235|ref|YP_810779.1| transcription termination factor [Oenococcus oeni PSU-1]
 gi|118586758|ref|ZP_01544195.1| transcription termination protein NusB [Oenococcus oeni ATCC
           BAA-1163]
 gi|290890780|ref|ZP_06553847.1| hypothetical protein AWRIB429_1237 [Oenococcus oeni AWRIB429]
 gi|116091960|gb|ABJ57114.1| Transcription termination factor [Oenococcus oeni PSU-1]
 gi|118432846|gb|EAV39575.1| transcription termination protein NusB [Oenococcus oeni ATCC
           BAA-1163]
 gi|290479552|gb|EFD88209.1| hypothetical protein AWRIB429_1237 [Oenococcus oeni AWRIB429]
          Length = 130

 Score =  108 bits (270), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 26/143 (18%), Positives = 56/143 (39%), Gaps = 14/143 (9%)

Query: 12  LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71
           +S  R   R  + QA++ ++I       ++ +    +   D              ++F  
Sbjct: 1   MSLSRQQIRELSFQAIFALEINSDQDKALLKKVLFKQNTID--------------DYFNE 46

Query: 72  IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
           ++ GV    + ++      L + WS  R+       ++ G+ EL     +P +V + +  
Sbjct: 47  LVDGVFAVHKELEEKYKPYLKDNWSLERISKTADIAMQIGLFELTSRIDIPKKVSLDQAT 106

Query: 132 CIAHDFFYGDEPKFINAVLDKVS 154
            +A +F    + KF+N VL    
Sbjct: 107 ELAKNFGDESDGKFVNGVLAHFV 129


>gi|34762362|ref|ZP_00143364.1| N utilization substance protein B [Fusobacterium nucleatum subsp.
           vincentii ATCC 49256]
 gi|27887944|gb|EAA25010.1| N utilization substance protein B [Fusobacterium nucleatum subsp.
           vincentii ATCC 49256]
          Length = 153

 Score =  108 bits (270), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 29/158 (18%), Positives = 75/158 (47%), Gaps = 5/158 (3%)

Query: 1   MTIQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESV 60
           M     +++ K      +AR    + ++  ++   ++ ++  ++E Y      + +  + 
Sbjct: 1   MNKNFEEQEKKAKGGIRLAREEVFKLVFGTEVTESTSDKLKQDFEIYL---QNDEEFVAT 57

Query: 61  YLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHS 120
                LE+ R  I+G+    + I  +I    T+ W++ R+ ++  ++L     E++   +
Sbjct: 58  LNENQLEFIRDSINGIAKNYEDIKDIIKKN-TKNWAYERIGIVERALLIVATYEILF-KN 115

Query: 121 VPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEE 158
           +P+EVI +E V +A ++      +F+N VL  + + ++
Sbjct: 116 IPIEVIANEIVELAKEYGNEKSYEFVNGVLANIEKSKK 153


>gi|256846520|ref|ZP_05551977.1| transcription antitermination factor NusB [Fusobacterium sp.
           3_1_36A2]
 gi|294784109|ref|ZP_06749410.1| transcription antitermination factor NusB [Fusobacterium sp.
           3_1_27]
 gi|256718289|gb|EEU31845.1| transcription antitermination factor NusB [Fusobacterium sp.
           3_1_36A2]
 gi|294488179|gb|EFG35524.1| transcription antitermination factor NusB [Fusobacterium sp.
           3_1_27]
          Length = 153

 Score =  108 bits (270), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 29/158 (18%), Positives = 74/158 (46%), Gaps = 5/158 (3%)

Query: 1   MTIQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESV 60
           M     +++ K      +AR    + ++  ++   ++ ++  ++E Y      + +  + 
Sbjct: 1   MNKNFEEQEKKAKGGIRLAREEVFKLVFGTEVTESTSDKLKQDFEIYL---QNDEEFVAT 57

Query: 61  YLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHS 120
                LE+ R  I+G+    + I  +I    T+ W++ R+ ++  ++L     E++   +
Sbjct: 58  LNENQLEFIRDSINGIAKNYEDIKDIIKKN-TKNWAYERIGIVERALLIVATYEILF-KN 115

Query: 121 VPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEE 158
            P+EVI +E V +A ++      +F+N VL  + + ++
Sbjct: 116 TPIEVIANEIVELAKEYGNEKSYEFVNGVLANIEKSKK 153


>gi|313680543|ref|YP_004058282.1| nusb antitermination factor [Oceanithermus profundus DSM 14977]
 gi|313153258|gb|ADR37109.1| NusB antitermination factor [Oceanithermus profundus DSM 14977]
          Length = 142

 Score =  108 bits (270), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 29/146 (19%), Positives = 52/146 (35%), Gaps = 13/146 (8%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           R  AR  A + L++         E           A                + R ++ G
Sbjct: 2   RRRARELAFKVLFEHLQGDVPLEE-----------AWRHALEGEELDEEGRAFARRLVEG 50

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
              R   +D +++    E W F ++     ++LR    E++     P   +I   V IA 
Sbjct: 51  FARRAAEVDRILAET-VEGWDFGQMSKTDLAVLRLATYEMLY-EDTPFAPLIEVAVKIAG 108

Query: 136 DFFYGDEPKFINAVLDKVSRKEEIKR 161
            +   D  KF+N VL ++ R+ +   
Sbjct: 109 KYGGEDSGKFVNGVLARLKRRIDAGE 134


>gi|126664007|ref|ZP_01735001.1| putative N utilization substance protein [Flavobacteria bacterium
           BAL38]
 gi|126623956|gb|EAZ94650.1| putative N utilization substance protein [Flavobacteria bacterium
           BAL38]
          Length = 302

 Score =  108 bits (270), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 29/129 (22%), Positives = 58/129 (44%), Gaps = 5/129 (3%)

Query: 40  IISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHI-DLLISSCLTEKWSFS 98
           I+ + +  +   DT +  +      D ++ + +    +  +  +    I    T  W   
Sbjct: 172 IVKQIKQLKSEKDTLIVPKVYKDEDDKDFVKNLFRRTVLNEVELSKEYIDK--TPNWDVE 229

Query: 99  RLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEE 158
           R+  I   IL+  + EL++  S+P +V I+EY+ IA ++       FIN +LD + +  E
Sbjct: 230 RIAEIDTIILKMAICELLKFPSIPTKVTINEYLEIAKEYSTPKSSIFINGILDNLVK--E 287

Query: 159 IKRSGCVSA 167
             R G ++ 
Sbjct: 288 FNRDGKLNK 296


>gi|229825477|ref|ZP_04451546.1| hypothetical protein GCWU000182_00837 [Abiotrophia defectiva ATCC
           49176]
 gi|229790040|gb|EEP26154.1| hypothetical protein GCWU000182_00837 [Abiotrophia defectiva ATCC
           49176]
          Length = 138

 Score =  108 bits (270), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 35/146 (23%), Positives = 63/146 (43%), Gaps = 12/146 (8%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           R   R    + ++  D       E   ++E+Y   ++ + D E ++           +  
Sbjct: 3   RREFREHTAKLIFIFDF--YPEAEWKEQFESYADYSEIKEDREGLWQR---------VMA 51

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
           + ++K  +D LI    ++KW  SRL      +LR  V E+     +P +V ++E V +A 
Sbjct: 52  LEEKKAEVDSLIDGA-SKKWRISRLSKTDLMLLRVAVYEIKFDSEIPDKVSVNEAVELAK 110

Query: 136 DFFYGDEPKFINAVLDKVSRKEEIKR 161
            +   + P F+N VL K    EE K 
Sbjct: 111 IYGGDESPAFVNGVLAKFMSGEEAKE 136


>gi|260654155|ref|ZP_05859645.1| transcription antitermination factor NusB [Jonquetella anthropi
           E3_33 E1]
 gi|260631140|gb|EEX49334.1| transcription antitermination factor NusB [Jonquetella anthropi
           E3_33 E1]
          Length = 165

 Score =  108 bits (270), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 45/166 (27%), Positives = 63/166 (37%), Gaps = 12/166 (7%)

Query: 1   MTIQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEI---ISEYETYRFCADT-ELD 56
           MT +   K    S ++ + R  AVQAL+ +D        +     ++E   F  D  E+D
Sbjct: 1   MTTES--KGNISSQKQHLRRFLAVQALFALDSSADPAGTLRLLADDWELLGFHGDELEID 58

Query: 57  VE-----SVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAG 111
            E           D          V      +D LI+ CL   W   RLD +  +ILR  
Sbjct: 59  DETASQLPAISAEDCGAAVQWAERVWSHLDQVDSLIAPCL-RGWRLPRLDGVDRAILRLC 117

Query: 112 VLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKE 157
             E     SV   V  SE V +A         KF+N V+  + R E
Sbjct: 118 FFESRVEGSVNDAVAASEAVILAKAMGGEQSAKFVNGVIGSIMRGE 163


>gi|282850892|ref|ZP_06260266.1| transcription antitermination factor NusB [Lactobacillus gasseri
           224-1]
 gi|282557844|gb|EFB63432.1| transcription antitermination factor NusB [Lactobacillus gasseri
           224-1]
          Length = 133

 Score =  107 bits (269), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 27/138 (19%), Positives = 63/138 (45%), Gaps = 11/138 (7%)

Query: 20  RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79
           R  A+QA+Y  +    +  E + +             ++++ L    ++   I++GV+  
Sbjct: 7   RRIAMQAIYLANQGNLTNAEEVCQKA-----------LKALELKSFPDYSTEIVNGVLAN 55

Query: 80  KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139
           K+ +D  +S  L + W  +R++ I  +IL   + E+     +     ++E + +  +F  
Sbjct: 56  KKALDEQLSKYLKKGWRLNRINEIDLAILEVALYEMQNSKVIEPVAALNEALNLCDEFSS 115

Query: 140 GDEPKFINAVLDKVSRKE 157
            +  KF+N +L    +K+
Sbjct: 116 KESKKFVNGLLANFIKKD 133


>gi|227875419|ref|ZP_03993560.1| possible transcription antitermination protein NusB [Mobiluncus
           mulieris ATCC 35243]
 gi|227843973|gb|EEJ54141.1| possible transcription antitermination protein NusB [Mobiluncus
           mulieris ATCC 35243]
          Length = 182

 Score =  107 bits (269), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 28/130 (21%), Positives = 55/130 (42%), Gaps = 8/130 (6%)

Query: 24  VQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHI 83
           +  LY+  +     +  I      R   +TE   ++        + R I+ GV +    I
Sbjct: 1   MDVLYEAHLKDLDDSAGIYSLAKLR---ETETTAQTPMP----PYAREILEGVAEHLDRI 53

Query: 84  DLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEP 143
           D  +++  +  WS  R+  +  +I+R    E++    V   V I+  + +A +    + P
Sbjct: 54  DAALATY-SRAWSLHRMPEVDLAIMRVATWEILFNPDVDGPVAITAAMQLAAERSTDESP 112

Query: 144 KFINAVLDKV 153
           KFIN +L  +
Sbjct: 113 KFINGLLGTI 122


>gi|164688612|ref|ZP_02212640.1| hypothetical protein CLOBAR_02257 [Clostridium bartlettii DSM
           16795]
 gi|164603025|gb|EDQ96490.1| hypothetical protein CLOBAR_02257 [Clostridium bartlettii DSM
           16795]
          Length = 169

 Score =  107 bits (269), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 37/164 (22%), Positives = 70/164 (42%), Gaps = 19/164 (11%)

Query: 11  KLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFC------------------AD 52
            +  +R  +R   ++ +YQ  I     T++ +E E +                      D
Sbjct: 3   NIRAKRETSREYLMKLMYQTYISNGDITDLENELEGFLENNQEYIISRYKELVLTYSDRD 62

Query: 53  TELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGV 112
             LD  +V   VD  +   +   +  R   I+ LI +  T+ WS +R   I  +IL+  +
Sbjct: 63  VNLDDVTVNKCVDKAYLTKVCDILRLRIDDINELIENN-TKNWSINRFSKIDLAILQIAI 121

Query: 113 LELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRK 156
            E++   ++P +V I++ + +A  +     PKFIN +L  V  +
Sbjct: 122 AEMLSDLNIPEKVSINQAIDLAKIYCEEKTPKFINGILGSVVDE 165


>gi|289643066|ref|ZP_06475197.1| NusB antitermination factor [Frankia symbiont of Datisca glomerata]
 gi|289507110|gb|EFD28078.1| NusB antitermination factor [Frankia symbiont of Datisca glomerata]
          Length = 99

 Score =  107 bits (269), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 26/82 (31%), Positives = 42/82 (51%), Gaps = 1/82 (1%)

Query: 67  EWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVI 126
           E+   ++ GV++R   ID ++S    E+W+  R+  +  +ILR G LEL+    +P  V 
Sbjct: 3   EYTVSLVEGVVERLADIDEMLSDH-AEEWTLERMPPVDRNILRIGALELLWREDIPDGVA 61

Query: 127 ISEYVCIAHDFFYGDEPKFINA 148
           I E V +A        P F+N 
Sbjct: 62  IDEAVALAGLVSTERSPVFVNG 83


>gi|300361963|ref|ZP_07058140.1| transcription antitermination factor NusB [Lactobacillus gasseri
           JV-V03]
 gi|300354582|gb|EFJ70453.1| transcription antitermination factor NusB [Lactobacillus gasseri
           JV-V03]
          Length = 133

 Score =  107 bits (269), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 29/138 (21%), Positives = 59/138 (42%), Gaps = 11/138 (7%)

Query: 20  RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79
           R  A+QA+Y   +          E       A        + L    ++   I++GV+  
Sbjct: 7   RRIAMQAIY---LANQGNLTDAEEVCQKALKA--------LELKSFPDYSAEIVNGVLAN 55

Query: 80  KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139
           K+ +D  +S  L + W  +R++ I  +IL   + E+    ++     ++E + +  +F  
Sbjct: 56  KKELDEQLSKYLKKGWRLNRINEIDLAILEVALYEMQNSKAIEPVAALNEALNLCDEFSS 115

Query: 140 GDEPKFINAVLDKVSRKE 157
            +  KFIN +L    +K+
Sbjct: 116 KESKKFINGLLANFIKKD 133


>gi|262066420|ref|ZP_06026032.1| transcription antitermination factor NusB [Fusobacterium
           periodonticum ATCC 33693]
 gi|291379847|gb|EFE87365.1| transcription antitermination factor NusB [Fusobacterium
           periodonticum ATCC 33693]
          Length = 152

 Score =  107 bits (269), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 26/139 (18%), Positives = 66/139 (47%), Gaps = 5/139 (3%)

Query: 17  GIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGV 76
            +AR    + ++  +    +  E+  +++ Y      + +  +      LE+ R  I+G+
Sbjct: 17  RLAREELFKLVFGAESTEATPDELKQDFDIYL---QNDEEFIATLNENQLEFIRSSINGI 73

Query: 77  MDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHD 136
            +   +I  +I    T+ W++SR+ ++  ++L     E +   + P+EV+ +E V +A +
Sbjct: 74  AENYDNIKDIIKKN-TKNWAYSRIGLVERTLLIIATYEFLF-KNTPIEVVANETVELAKE 131

Query: 137 FFYGDEPKFINAVLDKVSR 155
           +      +F+N +L  + +
Sbjct: 132 YGNEKSYEFVNGILANIGK 150


>gi|257463858|ref|ZP_05628244.1| transcription antitermination protein NusB [Fusobacterium sp. D12]
 gi|317061389|ref|ZP_07925874.1| N utilization substance protein B [Fusobacterium sp. D12]
 gi|313687065|gb|EFS23900.1| N utilization substance protein B [Fusobacterium sp. D12]
          Length = 138

 Score =  107 bits (269), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 37/149 (24%), Positives = 69/149 (46%), Gaps = 11/149 (7%)

Query: 10  LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF 69
           ++    R  AR    + ++Q +I G S  +    +E      + E D  +        + 
Sbjct: 1   MREKMTRREAREELFKWIFQTEIQGNSMEKA---FEYSSLREEIEKDEVTKL------FL 51

Query: 70  RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISE 129
                G+ + ++ I+  I + +T  W FSR+  +  S+L+  V E+     +PVE+I++E
Sbjct: 52  ERYRKGLAEHREEIETKIQAAMT-DWDFSRIGYVEKSLLKLAVYEM-YFEDLPVEIIVNE 109

Query: 130 YVCIAHDFFYGDEPKFINAVLDKVSRKEE 158
            V IA  +      +FIN VL KV + ++
Sbjct: 110 AVEIAKIYGDVKTHEFINGVLAKVIKMKQ 138


>gi|255038668|ref|YP_003089289.1| NusB antitermination factor [Dyadobacter fermentans DSM 18053]
 gi|254951424|gb|ACT96124.1| NusB antitermination factor [Dyadobacter fermentans DSM 18053]
          Length = 388

 Score =  107 bits (269), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 34/142 (23%), Positives = 61/142 (42%), Gaps = 5/142 (3%)

Query: 27  LYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLL 86
           LY  D      +  I    T       +L   +     D  +   +   V+      D+ 
Sbjct: 242 LYWADHAELIRSLAIKTLRTADDAHTFQLAPLTKDWEEDRAFVEELCKIVIRESDQYDVY 301

Query: 87  ISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFI 146
           +   L + W   R+ ++   IL+  + ELI    +PV+V I+E++ IA  +      KF+
Sbjct: 302 LEDQL-KNWELERIALVDLIILKTALAELIHFPGIPVKVTINEFIEIAKRYSTPKSGKFV 360

Query: 147 NAVLD----KVSRKEEIKRSGC 164
           N VLD    K++++  I++SG 
Sbjct: 361 NGVLDVLSVKLAKEGVIRKSGR 382


>gi|116629407|ref|YP_814579.1| transcription termination factor [Lactobacillus gasseri ATCC 33323]
 gi|311110942|ref|ZP_07712339.1| transcription antitermination factor NusB [Lactobacillus gasseri
           MV-22]
 gi|116094989|gb|ABJ60141.1| Transcription termination factor [Lactobacillus gasseri ATCC 33323]
 gi|311066096|gb|EFQ46436.1| transcription antitermination factor NusB [Lactobacillus gasseri
           MV-22]
          Length = 133

 Score =  107 bits (269), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 27/138 (19%), Positives = 63/138 (45%), Gaps = 11/138 (7%)

Query: 20  RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79
           R  A+QA+Y  +    +  E + +             ++++ L    ++   I++GV+  
Sbjct: 7   RRIAMQAIYLANQGNLTNAEEVCQKA-----------LKALELKSFPDYSTEIVNGVLAN 55

Query: 80  KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139
           K+ +D  +S  L + W  +R++ I  +IL   + E+     +     ++E + +  +F  
Sbjct: 56  KKALDEQLSKYLKKGWRLNRINEIDLAILEVALYEMQNSKVIEPVAALNEALNLCDEFSS 115

Query: 140 GDEPKFINAVLDKVSRKE 157
            +  KF+N +L    +K+
Sbjct: 116 KESKKFVNGLLANFIKKD 133


>gi|237741349|ref|ZP_04571830.1| N utilization substance protein B [Fusobacterium sp. 4_1_13]
 gi|229430881|gb|EEO41093.1| N utilization substance protein B [Fusobacterium sp. 4_1_13]
          Length = 153

 Score =  107 bits (268), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 28/158 (17%), Positives = 74/158 (46%), Gaps = 5/158 (3%)

Query: 1   MTIQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESV 60
           M     +++ K      +AR    + ++  ++   ++ ++  ++E Y      + +  + 
Sbjct: 1   MNKNFEEQEKKAKGGIRLAREEVFKLVFGTEVTESTSDKLKQDFEIYL---QNDEEFVAT 57

Query: 61  YLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHS 120
                LE+ R  I+G+    + I  +I    T+ W++ R+ ++  ++L     E++   +
Sbjct: 58  LNENQLEFIRDSINGIAKNYEDIKDIIKKN-TKNWAYERIGIVERALLIVATYEILF-KN 115

Query: 121 VPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEE 158
            P+EVI +E V +A ++      +F+N +L  + + ++
Sbjct: 116 TPIEVIANEIVELAKEYGNEKSYEFVNGILANIEKSKK 153


>gi|325954222|ref|YP_004237882.1| NusB antitermination factor [Weeksella virosa DSM 16922]
 gi|323436840|gb|ADX67304.1| NusB antitermination factor [Weeksella virosa DSM 16922]
          Length = 306

 Score =  107 bits (268), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 22/94 (23%), Positives = 41/94 (43%), Gaps = 1/94 (1%)

Query: 63  HVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVP 122
             D ++ + +    +  +      I   + E W   R+  +   IL   + E     S+P
Sbjct: 197 EEDQKFAQDLFRLTVKHQSQNKEFIGQ-MAENWELDRIAAVDLIILEMAITEFKHFPSIP 255

Query: 123 VEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRK 156
            +V I+EY+ +A ++       F+N +LDK  RK
Sbjct: 256 TKVTINEYIELAKNYSTEKSRIFVNGILDKALRK 289


>gi|154173840|ref|YP_001407739.1| transcription antitermination protein NusB [Campylobacter curvus
           525.92]
 gi|166215674|sp|A7GWZ7|NUSB_CAMC5 RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|112803582|gb|EAU00926.1| transcription antitermination factor NusB [Campylobacter curvus
           525.92]
          Length = 131

 Score =  107 bits (268), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 34/138 (24%), Positives = 54/138 (39%), Gaps = 14/138 (10%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           R   R A V  LY  ++ G    E   E+   +   +                       
Sbjct: 4   RHQVRQAVVSLLYAHEM-GSEMNEFKDEFLEEKKIRNERKIQALETFDA----------- 51

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
           +  +K  +D ++   L EK    R+ ++  +ILR GV E+         VII+E + +A 
Sbjct: 52  ICLKKGELDEILKPYLKEK-DIERIGIVELAILRLGVYEMKFTG-TDKAVIINEAIELAK 109

Query: 136 DFFYGDEPKFINAVLDKV 153
           +      PKFIN VLD +
Sbjct: 110 ELGGDSAPKFINGVLDAL 127


>gi|257465920|ref|ZP_05630231.1| transcription antitermination protein NusB [Fusobacterium
           gonidiaformans ATCC 25563]
 gi|315917076|ref|ZP_07913316.1| transcription antitermination protein NusB [Fusobacterium
           gonidiaformans ATCC 25563]
 gi|317058823|ref|ZP_07923308.1| transcription antitermination protein NusB [Fusobacterium sp.
           3_1_5R]
 gi|313684499|gb|EFS21334.1| transcription antitermination protein NusB [Fusobacterium sp.
           3_1_5R]
 gi|313690951|gb|EFS27786.1| transcription antitermination protein NusB [Fusobacterium
           gonidiaformans ATCC 25563]
          Length = 134

 Score =  107 bits (268), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 36/143 (25%), Positives = 65/143 (45%), Gaps = 11/143 (7%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           R  AR    + ++Q +I G S  E    +E      + E D       V   +      G
Sbjct: 3   RREAREELFKWIFQTEIQGNSVEEA---FEHSFLREEIEKD------EVSKVFLERYRKG 53

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
           +++ ++ +   I + +T  W   R+  +  S+L+  V E+     +PVE+I++E V IA 
Sbjct: 54  MVEHQEEVAEKIEAAMT-DWDLPRIGYVEKSLLKIAVYEI-YFEDLPVEIIVNEAVEIAK 111

Query: 136 DFFYGDEPKFINAVLDKVSRKEE 158
            +      +FIN VL KV + ++
Sbjct: 112 IYGDVKTHEFINGVLAKVIKMKK 134


>gi|257452280|ref|ZP_05617579.1| transcription antitermination protein NusB [Fusobacterium sp.
           3_1_5R]
          Length = 138

 Score =  107 bits (267), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 36/149 (24%), Positives = 67/149 (44%), Gaps = 11/149 (7%)

Query: 10  LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF 69
           ++    R  AR    + ++Q +I G S  E    +E      + E D       V   + 
Sbjct: 1   MREKMTRREAREELFKWIFQTEIQGNSVEEA---FEHSFLREEIEKD------EVSKVFL 51

Query: 70  RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISE 129
                G+++ ++ +   I + +T  W   R+  +  S+L+  V E+     +PVE+I++E
Sbjct: 52  ERYRKGMVEHQEEVAEKIEAAMT-DWDLPRIGYVEKSLLKIAVYEI-YFEDLPVEIIVNE 109

Query: 130 YVCIAHDFFYGDEPKFINAVLDKVSRKEE 158
            V IA  +      +FIN VL KV + ++
Sbjct: 110 AVEIAKIYGDVKTHEFINGVLAKVIKMKK 138


>gi|269792648|ref|YP_003317552.1| NusB antitermination factor [Thermanaerovibrio acidaminovorans DSM
           6589]
 gi|269100283|gb|ACZ19270.1| NusB antitermination factor [Thermanaerovibrio acidaminovorans DSM
           6589]
          Length = 148

 Score =  107 bits (267), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 35/147 (23%), Positives = 59/147 (40%), Gaps = 12/147 (8%)

Query: 12  LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71
           L  +R  AR  A+Q  Y +D+          E           LD E   +    ++   
Sbjct: 5   LPKKRRRARELALQLGYLMDMRQ--------ELGINEVLGSLPLDEEDPEV---RDYAVA 53

Query: 72  IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
           +  G+   +Q ++ ++   L   W   R+  +    +R  +LE      VP  V ISE V
Sbjct: 54  LTSGLYRERQRLEGILRERLV-GWRPERMVAVDRVAIRLAILEGYLERLVPFPVAISEAV 112

Query: 132 CIAHDFFYGDEPKFINAVLDKVSRKEE 158
            +A  F   D  +F+N VL ++ +  E
Sbjct: 113 ELAKLFGTEDSGRFVNGVLGRIFKDLE 139


>gi|282895593|ref|ZP_06303727.1| NusB antitermination factor [Raphidiopsis brookii D9]
 gi|281199433|gb|EFA74297.1| NusB antitermination factor [Raphidiopsis brookii D9]
          Length = 213

 Score =  107 bits (267), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 29/106 (27%), Positives = 50/106 (47%), Gaps = 2/106 (1%)

Query: 53  TELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGV 112
            EL   +        + + I+  V + +  +D +IS  L   W  +RL  I   IL+  V
Sbjct: 108 PELIQLANQDKEVRNYAKEIVVTVDENRTILDQIISQALV-DWQVTRLAQIDRDILQIAV 166

Query: 113 LELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEE 158
            E+     VP  + I+E V +A  +   D  +FIN VL +V+ +++
Sbjct: 167 AEMKFM-EVPPSIAINEAVELAKRYSGDDGHRFINGVLRRVTEQKQ 211


>gi|260062175|ref|YP_003195255.1| NusB family protein [Robiginitalea biformata HTCC2501]
 gi|88783737|gb|EAR14908.1| NusB family protein [Robiginitalea biformata HTCC2501]
          Length = 366

 Score =  107 bits (267), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 29/122 (23%), Positives = 58/122 (47%), Gaps = 3/122 (2%)

Query: 47  YRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCS 106
           ++   ++ L    +    D+E+   ++   +++   ++  I    T  W   R+  I   
Sbjct: 243 HQGAPESYLLPALLKNSEDMEFAMDLLRKTLNKNAALEAEIEGK-TPNWDKERIAEIDGI 301

Query: 107 ILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRSGCVS 166
           +L+ G+ EL+   S+P  V I+EY+ IA ++       FIN +LDK+ R  E + +G + 
Sbjct: 302 LLKMGIAELLYFPSIPERVTINEYLEIAKEYSTPKSSIFINGILDKLIR--EYREAGRLK 359

Query: 167 AI 168
             
Sbjct: 360 KT 361


>gi|220909702|ref|YP_002485013.1| transcription antitermination protein NusB [Cyanothece sp. PCC
           7425]
 gi|254772629|sp|B8HYJ8|NUSB_CYAP4 RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|219866313|gb|ACL46652.1| NusB antitermination factor [Cyanothece sp. PCC 7425]
          Length = 209

 Score =  107 bits (267), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 43/166 (25%), Positives = 72/166 (43%), Gaps = 7/166 (4%)

Query: 4   QDNKKDLKLSHRRGIARLAA--VQAL-YQIDIIGCSTTEIISEYETYRFCADTELD--VE 58
           QD  +   +  +RG  RL A  +QA+  Q      +    ++E    R     +L   V+
Sbjct: 46  QDALETAAMELKRGRDRLLASEIQAVDVQSSRAMVTEAITLAETAVNRLGMVLDLPEFVQ 105

Query: 59  SVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIEC 118
                   ++   I+  V+  +  ID L+ + L   W F+RL  I  +ILR  V E++  
Sbjct: 106 LANQQQVRDFSLDILKQVLTHRTAIDHLLETALV-DWQFNRLAQIDRNILRIAVAEILYL 164

Query: 119 HSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRSGC 164
              P +V I+E V +A  +   D  +F+N VL +     E +  G 
Sbjct: 165 K-TPTQVTINEAVELAKRYSDEDGYRFVNGVLRRTIPHLEAQAQGT 209


>gi|313676012|ref|YP_004054008.1| nusb antitermination factor [Marivirga tractuosa DSM 4126]
 gi|312942710|gb|ADR21900.1| NusB antitermination factor [Marivirga tractuosa DSM 4126]
          Length = 382

 Score =  107 bits (267), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 29/114 (25%), Positives = 58/114 (50%), Gaps = 3/114 (2%)

Query: 54  ELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVL 113
           EL   S     D E+F+ +    ++     + ++S    + W+  R+ ++   IL+  V 
Sbjct: 263 ELIELSANWEDDSEFFKDLFTNTINNDDEYEKIVSDF-AKNWASERIAIVDMIILKMAVS 321

Query: 114 ELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRSGCVSA 167
           E++   S+PV+V I+EY+ ++ ++       F+N +LDK+S K E  + G +  
Sbjct: 322 EMLNFPSIPVKVTINEYIELSKNYSTQKSKIFVNGMLDKISAKLE--KDGKIKK 373


>gi|313673615|ref|YP_004051726.1| nusb antitermination factor [Calditerrivibrio nitroreducens DSM
           19672]
 gi|312940371|gb|ADR19563.1| NusB antitermination factor [Calditerrivibrio nitroreducens DSM
           19672]
          Length = 141

 Score =  106 bits (266), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 36/143 (25%), Positives = 68/143 (47%), Gaps = 14/143 (9%)

Query: 12  LSHRR-GIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFR 70
           +  +R    R  A+  LY + +      E I +        + E+ +ES+          
Sbjct: 1   MGGKRLTKIRKYALN-LYYMHLQNGELLETIVDSLVKYNGFNKEILLESLG--------- 50

Query: 71  VIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEY 130
            ++   +++   +D LIS  L + W  +RL M+   ILR  + EL E +  P++V I +Y
Sbjct: 51  -LLKKAIEKTVFLDELISKYLKQGWDLNRLPMVDLLILRLAIFELFESND-PIKV-IDDY 107

Query: 131 VCIAHDFFYGDEPKFINAVLDKV 153
           V +A+ +   + P +IN +L+K+
Sbjct: 108 VTLANKYSEQNSPGYINGILEKI 130


>gi|293192887|ref|ZP_06609731.1| n utilization substance protein B [Actinomyces odontolyticus F0309]
 gi|292819943|gb|EFF78942.1| n utilization substance protein B [Actinomyces odontolyticus F0309]
          Length = 320

 Score =  106 bits (266), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 34/143 (23%), Positives = 55/143 (38%), Gaps = 10/143 (6%)

Query: 16  RGIARLAAVQALYQIDIIGCSTT-EIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74
           R  AR  A   +++ D  G     E++ +    R                  E+   II 
Sbjct: 10  RTKARKRAADVVFEADQRGMGRDPEVLRDLLRERRVITAAQTPLP-------EYSIQIIA 62

Query: 75  GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELI-ECHSVPVEVIISEYVCI 133
           GV D  + ID LI +         R+  +  +++R  V E++     V   V I E + I
Sbjct: 63  GVADSLRRIDDLIEAH-ARVPGLDRVAAVDLAVMRVAVWEMLANSDDVSPIVAIDEAISI 121

Query: 134 AHDFFYGDEPKFINAVLDKVSRK 156
                    P+F+NAVLD + + 
Sbjct: 122 VRSISTDASPRFVNAVLDAIRKD 144


>gi|238852556|ref|ZP_04642966.1| transcription antitermination factor NusB [Lactobacillus gasseri
           202-4]
 gi|238834702|gb|EEQ26929.1| transcription antitermination factor NusB [Lactobacillus gasseri
           202-4]
          Length = 133

 Score =  106 bits (266), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 29/138 (21%), Positives = 58/138 (42%), Gaps = 11/138 (7%)

Query: 20  RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79
           R  A+QA+Y   +          E       A        + L    ++   I++GV+  
Sbjct: 7   RRIAMQAIY---LANQGNLTDAEEVCQKALKA--------LELKSFPDYSTEIVNGVLAN 55

Query: 80  KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139
           K+ +D  +S  L + W  +R++ I  +IL   + E+     +     ++E + +  +F  
Sbjct: 56  KKVLDEQLSKYLKKGWRLNRINEIDLAILEVALYEMQNSKVIEPVAALNEALNLCDEFSS 115

Query: 140 GDEPKFINAVLDKVSRKE 157
            +  KFIN +L    +K+
Sbjct: 116 KESKKFINGLLANFIKKD 133


>gi|154508767|ref|ZP_02044409.1| hypothetical protein ACTODO_01276 [Actinomyces odontolyticus ATCC
           17982]
 gi|153798401|gb|EDN80821.1| hypothetical protein ACTODO_01276 [Actinomyces odontolyticus ATCC
           17982]
          Length = 320

 Score =  106 bits (265), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 34/143 (23%), Positives = 55/143 (38%), Gaps = 10/143 (6%)

Query: 16  RGIARLAAVQALYQIDIIGCSTT-EIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74
           R  AR  A   +++ D  G     E++ +    R                  E+   II 
Sbjct: 10  RTKARKRAADVVFEADQRGMGRDPEVLRDLLRERRVITAAQTPLP-------EYSIQIIA 62

Query: 75  GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELI-ECHSVPVEVIISEYVCI 133
           GV D  + ID LI +         R+  +  +++R  V E++     V   V I E + I
Sbjct: 63  GVADSLRRIDDLIEAH-ARVPGLDRVAAVDLAVMRVAVWEMLANSDDVSPIVAIDEAISI 121

Query: 134 AHDFFYGDEPKFINAVLDKVSRK 156
                    P+F+NAVLD + + 
Sbjct: 122 VRSISTDASPRFVNAVLDAIRKD 144


>gi|296117827|ref|ZP_06836410.1| n utilization substance protein B-like protein [Corynebacterium
           ammoniagenes DSM 20306]
 gi|295969058|gb|EFG82300.1| n utilization substance protein B-like protein [Corynebacterium
           ammoniagenes DSM 20306]
          Length = 220

 Score =  106 bits (265), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 31/128 (24%), Positives = 56/128 (43%), Gaps = 8/128 (6%)

Query: 28  YQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLI 87
           Y+ +        I+ +    +   + E  V  +      E+ +V++ GV +    ID  I
Sbjct: 2   YEAENRDMDPVAIVED--RIKLAREDEHGVAPI-----AEYTKVLVTGVAEELDTIDSTI 54

Query: 88  SSCLTEKWSFSRLDMILCSILRAGVLELIEC-HSVPVEVIISEYVCIAHDFFYGDEPKFI 146
              L E W   R+  +  +I+R  V EL+     + +   +SE V +A ++       +I
Sbjct: 55  ERYLAEDWELYRIPAVDRAIMRVAVWELLYNSEEIDLATAVSEGVELASEYSTDAAAPYI 114

Query: 147 NAVLDKVS 154
           NAVLD V+
Sbjct: 115 NAVLDDVA 122


>gi|289422315|ref|ZP_06424165.1| transcription antitermination factor NusB [Peptostreptococcus
           anaerobius 653-L]
 gi|289157260|gb|EFD05875.1| transcription antitermination factor NusB [Peptostreptococcus
           anaerobius 653-L]
          Length = 164

 Score =  106 bits (265), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 28/157 (17%), Positives = 65/157 (41%), Gaps = 15/157 (9%)

Query: 15  RRGIARLAAVQALYQIDIIGCSTTEIISEYETY--------------RFCADTELDVESV 60
           +R ++R   ++ LYQ  ++    +++ +++E +                  + +L     
Sbjct: 9   QRKVSRELFMKFLYQEAVLKSDWSDLKAKFEEFIPSVQDDAMEIHNSHGGRELDLLEMPG 68

Query: 61  YLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHS 120
            L +D  +   ++      ++ ID  I+     KW+   L ++  +ILR  + E++    
Sbjct: 69  DLLLDASYLMDMVAAFDANREEIDSNINKF-ARKWTIDTLPIVDVAILRMAITEILYMID 127

Query: 121 VPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKE 157
           +P  +   E V +A  +      K+IN +L  V   +
Sbjct: 128 IPDGITCDEAVNLAKKYCDDGAYKYINGILGSVVNDK 164


>gi|163755270|ref|ZP_02162390.1| putative N utilization substance protein [Kordia algicida OT-1]
 gi|161324690|gb|EDP96019.1| putative N utilization substance protein [Kordia algicida OT-1]
          Length = 302

 Score =  106 bits (265), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 26/129 (20%), Positives = 56/129 (43%), Gaps = 3/129 (2%)

Query: 40  IISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSR 99
           I+   +  +   +     E      D  + R +    +   + +   I    T  W   R
Sbjct: 172 ILKSIKQAKPGKERIFLSELYKDDEDKVFVRDLFRKTVLNDEMLTAEIQGK-TPNWDKDR 230

Query: 100 LDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEI 159
           +  +   +L+  + EL++  S+P +V I+EY+ +A ++       F+N +LDK+ +  E 
Sbjct: 231 IANLDLILLKMAICELLKFPSIPAKVTINEYIELAKEYSTSKSSMFVNGILDKLIK--EY 288

Query: 160 KRSGCVSAI 168
           K+   ++ I
Sbjct: 289 KKENKLNKI 297


>gi|222823552|ref|YP_002575126.1| transcription antitermination factor NusB [Campylobacter lari
           RM2100]
 gi|254772621|sp|B9KFP0|NUSB_CAMLR RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|222538774|gb|ACM63875.1| transcription antitermination factor NusB [Campylobacter lari
           RM2100]
          Length = 132

 Score =  106 bits (265), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 33/143 (23%), Positives = 66/143 (46%), Gaps = 14/143 (9%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           R   R + V  LY   +   +  + I+E+   +   + +            ++   + +G
Sbjct: 4   RHQVRQSIVSLLYAAQLNQEN-KDFINEFLDEKKIRNDQ-----------RKFTLDLYNG 51

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
           + ++   +D  I+ CL E      +  I  +ILR G  E++   S    +II+E + +A 
Sbjct: 52  INEQLALLDEKINECLKEH-KLDGVASIEKAILRLGAYEILFT-STQKAIIINEAIELAK 109

Query: 136 DFFYGDEPKFINAVLDKVSRKEE 158
           +    + PKFIN VLDK++++ +
Sbjct: 110 EMAGDNAPKFINGVLDKINKEVQ 132


>gi|306818731|ref|ZP_07452453.1| possible transcription antitermination protein NusB [Mobiluncus
           mulieris ATCC 35239]
 gi|304648417|gb|EFM45720.1| possible transcription antitermination protein NusB [Mobiluncus
           mulieris ATCC 35239]
          Length = 182

 Score =  106 bits (265), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 27/130 (20%), Positives = 56/130 (43%), Gaps = 8/130 (6%)

Query: 24  VQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHI 83
           +  LY+  +     +  I      R   +TE   ++        + R I+ G+ +  + I
Sbjct: 1   MDVLYEAHLKDLDDSAGIYSLAKLR---ETETTAQTPMP----SYAREILEGIAEHLERI 53

Query: 84  DLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEP 143
           D  +++  +  WS  R+  +  +I+R    E++    V   V I+  + +A +    + P
Sbjct: 54  DAALATY-SRAWSLHRMPEVDLAIMRVATWEILFNPDVDGPVAITAAMQLAAERSTDESP 112

Query: 144 KFINAVLDKV 153
           KFIN +L  +
Sbjct: 113 KFINGLLGTI 122


>gi|71066624|ref|YP_265351.1| NusB antitermination factor [Psychrobacter arcticus 273-4]
 gi|119390801|sp|Q4FPZ1|NUSB_PSYA2 RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|71039609|gb|AAZ19917.1| probable NusB antitermination factor [Psychrobacter arcticus 273-4]
          Length = 375

 Score =  105 bits (264), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 29/147 (19%), Positives = 61/147 (41%), Gaps = 4/147 (2%)

Query: 17  GIARLAAVQALYQIDIIGC--STTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74
             AR  A+Q LY+  +          +                 +    V + ++  ++ 
Sbjct: 52  RKARRFAMQGLYEWLVTDRRFDIDGKLGWKANAPHDIAARTRATNAMHTVHIGYYHEMMR 111

Query: 75  GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134
            + ++   ++ LI+  L  +   ++LD +  +IL  G  EL     +P +V++ E + + 
Sbjct: 112 DIPEQIDALNTLITQQLDRE--INKLDTVEHAILLIGAYELQNRLEIPYKVVLDEAMKLN 169

Query: 135 HDFFYGDEPKFINAVLDKVSRKEEIKR 161
           + F   D  K INAVLD+++ +     
Sbjct: 170 NHFGATDAHKLINAVLDRMAVELRAPE 196


>gi|291287239|ref|YP_003504055.1| NusB antitermination factor [Denitrovibrio acetiphilus DSM 12809]
 gi|290884399|gb|ADD68099.1| NusB antitermination factor [Denitrovibrio acetiphilus DSM 12809]
          Length = 147

 Score =  105 bits (264), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 28/154 (18%), Positives = 59/154 (38%), Gaps = 12/154 (7%)

Query: 10  LKLSHR-RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEW 68
           +K + + R   R  A   +YQ+ I   +  EI   +       D  +          +E+
Sbjct: 1   MKKNFKARTRGRKFAYMMMYQLIIADYTPKEITKTFWNSVKEEDESV----------IEF 50

Query: 69  FRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIIS 128
              +  G  +     D +I   +   W++ R+  +   ILR  V EL      P   +I+
Sbjct: 51  ANRLFTGAAESVDANDEIICRYIRSDWTYERMGEVEKDILRVAVHEL-FRQEAPYYAVIN 109

Query: 129 EYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRS 162
           ++V +A  +        +N +L+ + +  ++   
Sbjct: 110 DFVTLARKYSDEKSASLVNGILENIRKNFKLSEG 143


>gi|167756946|ref|ZP_02429073.1| hypothetical protein CLORAM_02495 [Clostridium ramosum DSM 1402]
 gi|237734649|ref|ZP_04565130.1| predicted protein [Mollicutes bacterium D7]
 gi|167703121|gb|EDS17700.1| hypothetical protein CLORAM_02495 [Clostridium ramosum DSM 1402]
 gi|229382469|gb|EEO32560.1| predicted protein [Coprobacillus sp. D7]
          Length = 134

 Score =  105 bits (264), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 36/144 (25%), Positives = 63/144 (43%), Gaps = 11/144 (7%)

Query: 10  LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF 69
           +K  +R+ I R  AV A YQ  ++  +  EI     +         D +      D ++ 
Sbjct: 1   MKK-YRKKIIREKAVIATYQKLLVDTNEDEIREYLNS---------DKDLSSNQDDFDYC 50

Query: 70  RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISE 129
            + I  +    +     ++  L   W+  RL  +  +IL  G  EL+E      EVII+E
Sbjct: 51  FMFIISIASNIERYKAEVAKYLKPGWTLDRLSKMELAILLVGCYELLETEQS-KEVIINE 109

Query: 130 YVCIAHDFFYGDEPKFINAVLDKV 153
            V ++  +   D  KFIN +L+++
Sbjct: 110 AVELSKKYCDSDAYKFINGLLNRI 133


>gi|307244294|ref|ZP_07526409.1| transcription antitermination factor NusB [Peptostreptococcus
           stomatis DSM 17678]
 gi|306492444|gb|EFM64482.1| transcription antitermination factor NusB [Peptostreptococcus
           stomatis DSM 17678]
          Length = 156

 Score =  105 bits (263), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 30/155 (19%), Positives = 55/155 (35%), Gaps = 15/155 (9%)

Query: 15  RRGIARLAAVQALYQIDIIG--------------CSTTEIISEYETYRFCADTELDVESV 60
           +R ++R   ++ LY   +                 S  +   E        + ++     
Sbjct: 2   QRKVSREIFMKYLYSRAVSNAGWEGLSQDLDRFLDSVEDDAIEIHKSHGGKEIDMLDSYR 61

Query: 61  YLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHS 120
            + +D  +       V D    ID  I+      W+   +  +  +ILR  V E+    +
Sbjct: 62  EVILDSSYLMDAARAVEDNIGAIDAYINEY-ARNWTTDTMPAVDVAILRLAVAEIKFMFT 120

Query: 121 VPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSR 155
           +P  V   E V IA  +   D  K+IN +L  V +
Sbjct: 121 IPEVVACDEAVNIAKKYCDDDAYKYINGILGSVMK 155


>gi|282899369|ref|ZP_06307337.1| NusB antitermination factor [Cylindrospermopsis raciborskii CS-505]
 gi|281195736|gb|EFA70665.1| NusB antitermination factor [Cylindrospermopsis raciborskii CS-505]
          Length = 213

 Score =  105 bits (263), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 29/106 (27%), Positives = 49/106 (46%), Gaps = 2/106 (1%)

Query: 53  TELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGV 112
            EL   +        + + I+  V + +  +D +IS  L   W  +RL  I   IL+  V
Sbjct: 108 PELIQLANQDKEVRNYAKEIVVTVDENRPILDQIISQALV-DWQVTRLAQIDRDILQIAV 166

Query: 113 LELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEE 158
            E+     VP  + I+E V +A  +   D  +FIN VL +V  +++
Sbjct: 167 AEMKFM-EVPPSIAINEAVELAKRYSGDDGHRFINGVLRRVIDQKQ 211


>gi|317124726|ref|YP_004098838.1| NusB antitermination factor [Intrasporangium calvum DSM 43043]
 gi|315588814|gb|ADU48111.1| NusB antitermination factor [Intrasporangium calvum DSM 43043]
          Length = 137

 Score =  105 bits (262), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 30/139 (21%), Positives = 62/139 (44%), Gaps = 12/139 (8%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           R  AR  A+  L++ D  G +   ++ E              +      +  +   ++ G
Sbjct: 4   RSKARARALDILFEADQRGLNAEVLLDERLR-----------DPESRAGNNPYTADLVRG 52

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
           V+ R + ID  ++   ++ W+  R+  +  +ILR G  E++    +P    I+E V +A 
Sbjct: 53  VVGRWRDIDAALTDY-SQGWTLDRMPAVDRAILRVGAWEVLFNDDIPDAAAIAEAVALAT 111

Query: 136 DFFYGDEPKFINAVLDKVS 154
           +    + P F+N +L ++S
Sbjct: 112 ELSTDESPGFVNGLLARLS 130


>gi|227549190|ref|ZP_03979239.1| transcription antitermination protein NusB [Corynebacterium
           lipophiloflavum DSM 44291]
 gi|227078750|gb|EEI16713.1| transcription antitermination protein NusB [Corynebacterium
           lipophiloflavum DSM 44291]
          Length = 188

 Score =  105 bits (262), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 31/143 (21%), Positives = 59/143 (41%), Gaps = 7/143 (4%)

Query: 24  VQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHI 83
           V  L++ +        ++ +            D ++    +  E+ R II GV ++   I
Sbjct: 18  VDILFEAETRDIDPVAVVEDRIELA------QDPQNAVAPI-AEYTREIITGVAEKLDDI 70

Query: 84  DLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEP 143
           D  +   L++ W   RL  +   ILR    E++    V   + IS  + +A ++     P
Sbjct: 71  DDAVEQFLSQDWELGRLPAVDRQILRVAAWEILFNDDVAAPIAISNALGMAEEYAGHAAP 130

Query: 144 KFINAVLDKVSRKEEIKRSGCVS 166
            +I+AVLD V +   +  S   +
Sbjct: 131 PYIHAVLDDVVKTLPVPESAPPA 153


>gi|282856378|ref|ZP_06265657.1| transcription antitermination factor NusB [Pyramidobacter piscolens
           W5455]
 gi|282585749|gb|EFB91038.1| transcription antitermination factor NusB [Pyramidobacter piscolens
           W5455]
          Length = 174

 Score =  105 bits (262), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 38/158 (24%), Positives = 66/158 (41%), Gaps = 20/158 (12%)

Query: 17  GIARLAAVQALYQID-IIGCSTTEIISE------YETYRFCADTELDVESVYLHVDLE-- 67
             AR+   Q L  +D + G    ++  E      +      A+   + ES     D E  
Sbjct: 13  HAARVRLFQILCALDSLGGKKLDQLEVEASLEELFVEPEAVAENGAEAESGETDADEESV 72

Query: 68  --------WFRVIIHGVMDRKQ--HIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIE 117
                   + R   H  + R+    ID LI +  TE W   R+ ++  +I+R  + E + 
Sbjct: 73  LTRVPFADYRRSCEHACLVRRALPEIDALIETYSTE-WKTERMSLVDRTIIRLALYEAVI 131

Query: 118 CHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSR 155
              VP  V +SE V +A ++   D  +F+N VL ++ +
Sbjct: 132 AKKVPPGVALSEAVRLAKEYGSDDSSRFVNGVLARIVK 169


>gi|320093590|ref|ZP_08025479.1| N utilization substance protein B [Actinomyces sp. oral taxon 178
           str. F0338]
 gi|319979461|gb|EFW10934.1| N utilization substance protein B [Actinomyces sp. oral taxon 178
           str. F0338]
          Length = 323

 Score =  105 bits (262), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 34/143 (23%), Positives = 54/143 (37%), Gaps = 10/143 (6%)

Query: 16  RGIARLAAVQALYQIDIIGCSTT-EIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74
           R  AR  A   +++ D  G     E + +    R                  E+   II 
Sbjct: 10  RTKARKRAADVVFEADQRGMGRDPEALRDLLRERRVITAAQTPLP-------EYSIQIIA 62

Query: 75  GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELI-ECHSVPVEVIISEYVCI 133
           GV D  + ID LI +         R+  +  +++R  V E++     V   V I E + I
Sbjct: 63  GVADSLRRIDDLIEAH-ARVPGLDRVAAVDLAVMRVAVWEMLANSDDVSPIVAIDEAISI 121

Query: 134 AHDFFYGDEPKFINAVLDKVSRK 156
                    P+F+NAVLD + + 
Sbjct: 122 VRSISTDASPRFVNAVLDAIRKD 144


>gi|256372479|ref|YP_003110303.1| NusB antitermination factor [Acidimicrobium ferrooxidans DSM 10331]
 gi|256009063|gb|ACU54630.1| NusB antitermination factor [Acidimicrobium ferrooxidans DSM 10331]
          Length = 145

 Score =  105 bits (262), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 33/139 (23%), Positives = 58/139 (41%), Gaps = 22/139 (15%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           R + R   ++ LY+ D  G +  +++                       +  + R  I G
Sbjct: 12  RAVWRERVLELLYEADTKGEAPADLLR--------------------GDEPAFIRERIRG 51

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
           + +R+  ID  +++ +   W   RL  I  +ILR    EL+E  S P  V I+E V +A 
Sbjct: 52  LTERRSEIDAQLTAHVI-GWQLERLAPIDRAILRLATAELLEA-STPPSVAIAEAVKLAD 109

Query: 136 DFFYGDEPKFINAVLDKVS 154
            +       F+N VL  ++
Sbjct: 110 RYSTERSAAFVNGVLASIA 128


>gi|226226881|ref|YP_002760987.1| antitermination protein NusB [Gemmatimonas aurantiaca T-27]
 gi|226090072|dbj|BAH38517.1| antitermination protein NusB [Gemmatimonas aurantiaca T-27]
          Length = 157

 Score =  104 bits (261), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 39/165 (23%), Positives = 63/165 (38%), Gaps = 21/165 (12%)

Query: 1   MTIQDNKKDLKLSHRRGIARL---------AAVQALYQIDIIGCSTTEIISEYETYRFCA 51
           M      K  + +  R + R           A+QALY  D+   +  + I+         
Sbjct: 1   MQEPLAPKQGRRTRGRKVTREERMETRGRARALQALYAADLRDLTQVKRIATTVFDDLAI 60

Query: 52  DTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAG 111
           D            +  +   +I  V DR   +D  +   +T  W   RL  I  S+LR  
Sbjct: 61  DP----------AERLFASRLIATVADRGAVLDAALVE-VTANWRLERLGAIERSVLRLA 109

Query: 112 VLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRK 156
             EL      PV+V++ E V +A  +      +F+N VLD  +R+
Sbjct: 110 AAEL-AREETPVKVVLQEAVHLAERYGTERSARFVNGVLDAYARR 153


>gi|313896544|ref|ZP_07830093.1| transcription antitermination factor NusB [Selenomonas sp. oral
           taxon 137 str. F0430]
 gi|312974729|gb|EFR40195.1| transcription antitermination factor NusB [Selenomonas sp. oral
           taxon 137 str. F0430]
          Length = 121

 Score =  104 bits (261), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 17/98 (17%), Positives = 40/98 (40%), Gaps = 2/98 (2%)

Query: 59  SVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIEC 118
                 DL + + ++ G       ID  I+    ++W   R+  +  +++R    E+   
Sbjct: 22  EGLKEKDLPYAQGLVRGTRAALGEIDAAIARS-AKEWKLERMPGVDRNLIRMAFYEMYYQ 80

Query: 119 HS-VPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSR 155
              +     I+E V +A  +   D  +++N +L  + +
Sbjct: 81  EERIDPGTAINEAVELAKKYGAEDAGRYVNGILSAMQK 118


>gi|257059341|ref|YP_003137229.1| transcription antitermination protein NusB [Cyanothece sp. PCC
           8802]
 gi|256589507|gb|ACV00394.1| NusB antitermination factor [Cyanothece sp. PCC 8802]
          Length = 235

 Score =  104 bits (261), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 27/97 (27%), Positives = 47/97 (48%), Gaps = 2/97 (2%)

Query: 66  LEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEV 125
            E+   +I  V  R+  ID  + + L   W  +RL  I   ILR  V E++    +P +V
Sbjct: 141 REYALELIGAVNRRRTEIDQQLEAVLV-DWQLNRLPKIDRDILRIAVAEILF-LEIPNKV 198

Query: 126 IISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRS 162
            I+E + +A  +   +  +FIN VL + + +  I  +
Sbjct: 199 AINEAIEMAKRYSDDEGYRFINGVLRRFTERLRITNN 235


>gi|184200984|ref|YP_001855191.1| antitermination factor NusB [Kocuria rhizophila DC2201]
 gi|183581214|dbj|BAG29685.1| transcription antitermination protein NusB [Kocuria rhizophila
           DC2201]
          Length = 138

 Score =  104 bits (261), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 30/144 (20%), Positives = 62/144 (43%), Gaps = 14/144 (9%)

Query: 12  LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71
           +S  R  AR+ AV+ L++ +    S  + +                          +   
Sbjct: 1   MSGARSKARVRAVEILFEAEQRNESVRDALVRRRENSSSPIN-------------PYTVE 47

Query: 72  IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
           I+ GV +R++ ID  + +  ++ W+  R+  +  + LR G  EL+    +P  V ++E V
Sbjct: 48  ILEGVDERREDIDEFLETY-SQGWALGRMPAVDRNALRVGAWELLYNSEIPDGVAVAEAV 106

Query: 132 CIAHDFFYGDEPKFINAVLDKVSR 155
            +       D P+F+N +L ++ +
Sbjct: 107 AVTRQLSTDDSPRFVNGLLGRLQK 130


>gi|104774290|ref|YP_619270.1| transcription antitermination protein NusB [Lactobacillus
           delbrueckii subsp. bulgaricus ATCC 11842]
 gi|103423371|emb|CAI98227.1| Transcription antitermination protein NusB [Lactobacillus
           delbrueckii subsp. bulgaricus ATCC 11842]
 gi|325126077|gb|ADY85407.1| Transcriptional termination factor [Lactobacillus delbrueckii
           subsp. bulgaricus 2038]
          Length = 132

 Score =  104 bits (261), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 28/140 (20%), Positives = 57/140 (40%), Gaps = 11/140 (7%)

Query: 17  GIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGV 76
             +R  A+QA+Y   +     +   SE E     A        + L     + + ++ GV
Sbjct: 4   HDSRRIALQAIY---LYNQDPSFTASELENNVKSA--------LDLDTLPAYSQELVSGV 52

Query: 77  MDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHD 136
           +D++  +   +S+ L + W   RL     +IL   + E++    +     I+E + +  +
Sbjct: 53  IDKQAELRDKLSANLKQGWRLERLSKTSLAILEVALYEMLYSPVIEDRSAINEALNLCDE 112

Query: 137 FFYGDEPKFINAVLDKVSRK 156
           F       FIN +L    ++
Sbjct: 113 FDDPKSKAFINGILANFVQE 132


>gi|268608467|ref|ZP_06142194.1| transcription termination factor [Ruminococcus flavefaciens FD-1]
          Length = 138

 Score =  104 bits (261), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 33/147 (22%), Positives = 65/147 (44%), Gaps = 14/147 (9%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           R   R +A + +++  +     TE+    E        +               + I+ G
Sbjct: 3   RREIRDSAFKLVFEQLLRDDDITELYDIAEEIDEIIVNDE-------------VKKIVEG 49

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
            +   + +D +I+   ++  S SR+  +  +ILR  + E +   + P+   ISE + +A+
Sbjct: 50  TLAHAEELDSIIAGY-SKSRSLSRISKLNIAILRIAIYESLYDDNTPMNAAISEAINLAN 108

Query: 136 DFFYGDEPKFINAVLDKVSRKEEIKRS 162
            + Y ++ KFIN VL   SR ++ K S
Sbjct: 109 TYSYNEDSKFINGVLGAFSRDQKQKES 135


>gi|254303389|ref|ZP_04970747.1| N utilization substance protein B [Fusobacterium nucleatum subsp.
           polymorphum ATCC 10953]
 gi|148323581|gb|EDK88831.1| N utilization substance protein B [Fusobacterium nucleatum subsp.
           polymorphum ATCC 10953]
          Length = 155

 Score =  104 bits (261), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 27/141 (19%), Positives = 66/141 (46%), Gaps = 5/141 (3%)

Query: 17  GIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGV 76
            +AR    + ++  +    ++ E+  +++ Y      +    +      LE+ R  I+G+
Sbjct: 17  RLAREEVFKLVFGAEATEATSDELKQDFDIYL---QNDEKFIATLNENQLEFIRSSINGI 73

Query: 77  MDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHD 136
            +   +I  +I    T+ W+++R+ +I  ++L     E     + P+EVI +E V +A +
Sbjct: 74  AENYDNIKDIIKKN-TKNWAYARIGVIERALLIVATYEFSF-KNTPIEVIANEIVELAKE 131

Query: 137 FFYGDEPKFINAVLDKVSRKE 157
           +      +F+N +L  + + +
Sbjct: 132 YGNEKSYEFVNGILANIEKNK 152


>gi|300811637|ref|ZP_07092113.1| transcription antitermination factor NusB [Lactobacillus
           delbrueckii subsp. bulgaricus PB2003/044-T3-4]
 gi|300497338|gb|EFK32384.1| transcription antitermination factor NusB [Lactobacillus
           delbrueckii subsp. bulgaricus PB2003/044-T3-4]
 gi|325685900|gb|EGD27966.1| transcription antitermination protein NusB [Lactobacillus
           delbrueckii subsp. lactis DSM 20072]
          Length = 132

 Score =  104 bits (260), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 28/140 (20%), Positives = 57/140 (40%), Gaps = 11/140 (7%)

Query: 17  GIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGV 76
             +R  A+QA+Y   +     +   SE E     A        + L     + + ++ GV
Sbjct: 4   HDSRRIALQAIY---LYNQDPSVTASELENNVKSA--------LDLDTLPAYSQELVSGV 52

Query: 77  MDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHD 136
           +D++  +   +S+ L + W   RL     +IL   + E++    +     I+E + +  +
Sbjct: 53  IDKQAELRDKLSANLKQGWRLERLSKTSLAILEVALYEMLYSPVIEDRSAINEALNLCDE 112

Query: 137 FFYGDEPKFINAVLDKVSRK 156
           F       FIN +L    ++
Sbjct: 113 FDDPKSKAFINGILANFVQE 132


>gi|323701798|ref|ZP_08113469.1| sun protein [Desulfotomaculum nigrificans DSM 574]
 gi|323533334|gb|EGB23202.1| sun protein [Desulfotomaculum nigrificans DSM 574]
          Length = 453

 Score =  104 bits (260), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 31/143 (21%), Positives = 60/143 (41%), Gaps = 13/143 (9%)

Query: 15  RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74
           ++  AR  A+Q L           +++ E   Y   A            +D  +   I +
Sbjct: 2   KKVTARDLALQVL-----------KVVEEEGAYANLALNRYLELYQPGKLDRAFATEITY 50

Query: 75  GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134
           GV+     ID +++  L +    +   + + +ILR G  +++    VP     +E V +A
Sbjct: 51  GVLRNLNTIDWVLAHFLKQ--PLAAQTVWVRNILRMGTYQIMFMPRVPDSAACNESVELA 108

Query: 135 HDFFYGDEPKFINAVLDKVSRKE 157
             + +    KF+N VL  V+R++
Sbjct: 109 KKYGHTGAAKFVNGVLRNVARQQ 131


>gi|261366965|ref|ZP_05979848.1| transcription antitermination factor NusB [Subdoligranulum
           variabile DSM 15176]
 gi|282571083|gb|EFB76618.1| transcription antitermination factor NusB [Subdoligranulum
           variabile DSM 15176]
          Length = 138

 Score =  104 bits (260), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 24/104 (23%), Positives = 50/104 (48%), Gaps = 2/104 (1%)

Query: 55  LDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLE 114
           L   +     D  + R ++  + D  + +D LI+  L + W+ +R+  +    LR G+ E
Sbjct: 30  LPAGAEQPEAD-AFARQLLAAMNDHSEELDALIAGHL-KGWTLNRVPRVSLVALRLGLAE 87

Query: 115 LIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEE 158
           ++        V I+E V +   +   ++ +F+N +L  V+R+ E
Sbjct: 88  MLYGEEQKPGVAINEAVELVKKYGADNDYQFVNGLLGTVARERE 131


>gi|301167989|emb|CBW27575.1| putative N utilisation protein [Bacteriovorax marinus SJ]
          Length = 157

 Score =  104 bits (260), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 33/154 (21%), Positives = 58/154 (37%), Gaps = 13/154 (8%)

Query: 14  HRRGIARLAAVQALY----------QIDIIGCSTTEIISEYETYRF--CADTELDVESVY 61
           + + IAR  + + +Y          ++ +      E     E +        E    +  
Sbjct: 5   NNKTIAREFSFKLIYKVLCGNENLLELMLSKNPKAEYERFMEEFTNSCIEPDEEHPNNQL 64

Query: 62  LHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSV 121
                 +   +I GV   K  ++  IS  L  K   ++L+ I  ++L  G  E+    + 
Sbjct: 65  PSGAQNFALSLIDGVFTNKASLEDEISKHL-RKRKINQLEKIDYALLMLGCYEIQNVDAT 123

Query: 122 PVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSR 155
           P  V+I E V +A  F   D   FIN  LD + +
Sbjct: 124 PKAVVIDEMVNLARKFGTADTYSFINGTLDSIGK 157


>gi|67921757|ref|ZP_00515274.1| Antitermination protein NusB [Crocosphaera watsonii WH 8501]
 gi|67856349|gb|EAM51591.1| Antitermination protein NusB [Crocosphaera watsonii WH 8501]
          Length = 209

 Score =  104 bits (259), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 34/145 (23%), Positives = 60/145 (41%), Gaps = 13/145 (8%)

Query: 27  LYQIDIIGCSTTEI---------ISEYETYRFCADTELD--VESVYLHVDLEWFRVIIHG 75
           L+Q +    +             +++    R  +  E    V+    H   ++   +I  
Sbjct: 67  LFQSETRATTVESAKTMIEDALTLTQTAINRLASAVEFPEIVQLATQHEVRQYAIELIAT 126

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
           V  R+  ID  +   L + W   RL  I   ILR  V E++    +P +V I+E V +A 
Sbjct: 127 VARRRNDIDQQLEVVL-KDWQLKRLAKIDQDILRLAVAEILF-LDIPEKVAINEAVELAK 184

Query: 136 DFFYGDEPKFINAVLDKVSRKEEIK 160
            +   D  +FIN VL + + + + K
Sbjct: 185 RYSDDDGYRFINGVLRRFTDQMKQK 209


>gi|158336915|ref|YP_001518090.1| transcription antitermination protein NusB [Acaryochloris marina
           MBIC11017]
 gi|189035877|sp|B0C5Q2|NUSB_ACAM1 RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|158307156|gb|ABW28773.1| transcription antitermination protein NusB [Acaryochloris marina
           MBIC11017]
          Length = 205

 Score =  104 bits (259), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 26/91 (28%), Positives = 46/91 (50%), Gaps = 2/91 (2%)

Query: 66  LEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEV 125
            ++   +I  V   +  ID ++ + L   W   RL  I  ++LR  V E+     +P +V
Sbjct: 113 RDYTLDLIGAVHHHRDEIDQILETSLV-DWQLHRLAHIDANLLRLAVAEMKY-LDIPNQV 170

Query: 126 IISEYVCIAHDFFYGDEPKFINAVLDKVSRK 156
            I+E V +A  +   +  +FIN VL +V+R+
Sbjct: 171 AINESVELAKKYSAEEGHRFINGVLRRVTRQ 201


>gi|16331086|ref|NP_441814.1| transcription antitermination protein NusB [Synechocystis sp. PCC
           6803]
 gi|1653579|dbj|BAA18492.1| N utilization substance protein B [Synechocystis sp. PCC 6803]
          Length = 275

 Score =  103 bits (258), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 33/105 (31%), Positives = 48/105 (45%), Gaps = 5/105 (4%)

Query: 66  LEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEV 125
            ++   +I  V  R+Q ID  +   +   W  SRL  I   ILR  + EL     VP +V
Sbjct: 174 RKFALELIGTVCRRRQQIDEQLQEAMV-DWQLSRLAKIDQDILRLAIAELDY-LGVPQKV 231

Query: 126 IISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRSGCVSAITQ 170
            I+E V +A  +   D  +FIN VL +V+   E K  G      +
Sbjct: 232 AINEAVELAKRYSGQDGHRFINGVLRRVT---EKKTDGAPVTPGE 273


>gi|220928955|ref|YP_002505864.1| sun protein [Clostridium cellulolyticum H10]
 gi|219999283|gb|ACL75884.1| sun protein [Clostridium cellulolyticum H10]
          Length = 449

 Score =  103 bits (258), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 28/141 (19%), Positives = 59/141 (41%), Gaps = 13/141 (9%)

Query: 18  IARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVM 77
           +AR  A++ LY            I+E   Y   +            +D  +   +++G +
Sbjct: 5   LARETALKILY-----------DITENHAYSNISVNRHLENDKLREIDRSFATELVYGTV 53

Query: 78  DRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDF 137
                ID ++    + K    +L   + +ILR G+ +L+    +PV    +  V +A  +
Sbjct: 54  KWLLQIDYVLGKYSSVK--LKKLSPWIKNILRLGIYQLLHTDRIPVSAACNTGVELAKRY 111

Query: 138 FYGDEPKFINAVLDKVSRKEE 158
            +    +F+NAVL  +++ + 
Sbjct: 112 GHQASSRFVNAVLRNIAKSKN 132


>gi|225849626|ref|YP_002729860.1| transcription antitermination protein NusB [Persephonella marina
           EX-H1]
 gi|254772650|sp|C0QT45|NUSB_PERMH RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|225645609|gb|ACO03795.1| transcription antitermination factor NusB [Persephonella marina
           EX-H1]
          Length = 142

 Score =  103 bits (258), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 33/144 (22%), Positives = 57/144 (39%), Gaps = 11/144 (7%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           R  AR    + LY  DI G    EI+ ++           D+        +++   I+ G
Sbjct: 5   RKKAREIVFRTLYTYDIKGGDLFEIMEDHIK---------DIRGKLSKKTVDYIYSILKG 55

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
           + +    ID ++   L + W   RL     ++LR GV EL+         +  + + +  
Sbjct: 56  IDEHLPEIDDILRENL-KNWRLERLGYPERALLRLGVYELLFSDIEDKGRVFMDILDLTK 114

Query: 136 DFFY-GDEPKFINAVLDKVSRKEE 158
            +    D  KFIN VL  V +  +
Sbjct: 115 CYIDNPDTVKFINGVLSTVYKNRQ 138


>gi|294083737|ref|YP_003550494.1| NusB antitermination factor [Candidatus Puniceispirillum marinum
           IMCC1322]
 gi|292663309|gb|ADE38410.1| NusB antitermination factor [Candidatus Puniceispirillum marinum
           IMCC1322]
          Length = 160

 Score =  103 bits (258), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 38/132 (28%), Positives = 60/132 (45%), Gaps = 5/132 (3%)

Query: 24  VQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHI 83
           +Q LYQ  I   ++ +   +Y T+      ++        +D E    +  GV      +
Sbjct: 24  IQILYQSQITDRASVDFAPDYLTHYA---PDVSKSFRVKDLDHEHLNALYTGVEKEMVLL 80

Query: 84  DLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEP 143
           D  I+  L   WS  RL +I  ++LR G  EL     +P   ++SEY  I+       E 
Sbjct: 81  DEDIADSLASGWSIKRLPLIELTLLRCGAYELRFMPHIPARAVVSEYAAISDACG--CEV 138

Query: 144 KFINAVLDKVSR 155
            F+NAVLD++SR
Sbjct: 139 AFVNAVLDRLSR 150


>gi|167949504|ref|ZP_02536578.1| transcription antitermination protein NusB [Endoriftia persephone
           'Hot96_1+Hot96_2']
          Length = 182

 Score =  103 bits (257), Expect = 9e-21,   Method: Composition-based stats.
 Identities = 26/102 (25%), Positives = 46/102 (45%), Gaps = 13/102 (12%)

Query: 12  LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71
           +S +R  AR  AVQA+YQ  + G     I  ++             E      ++ +F+ 
Sbjct: 1   MSKKRSQARRHAVQAIYQWQMAGQDLAAIYEQFL-----------GEQDLSQFEVPYFKD 49

Query: 72  IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVL 113
           ++HGV +  Q +D L+   L    +   +D +  ++LR GV 
Sbjct: 50  LLHGVPNNLQELDGLLKPALDR--AIESVDPVERAVLRLGVY 89


>gi|186680628|ref|YP_001863824.1| transcription antitermination protein NusB [Nostoc punctiforme PCC
           73102]
 gi|238689253|sp|B2J3F1|NUSB_NOSP7 RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|186463080|gb|ACC78881.1| NusB antitermination factor [Nostoc punctiforme PCC 73102]
          Length = 213

 Score =  103 bits (257), Expect = 9e-21,   Method: Composition-based stats.
 Identities = 28/106 (26%), Positives = 51/106 (48%), Gaps = 2/106 (1%)

Query: 53  TELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGV 112
            EL   +        + + ++  V + +  ID L+S+ L   W  +RL  +   IL+  V
Sbjct: 108 PELIQLANQDKGVRNYAKELVITVNENRHIIDELLSTALV-DWQVTRLAQLDRDILQIAV 166

Query: 113 LELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEE 158
            E+     VP  + I+E V +A  +   D  +FIN VL +V+ +++
Sbjct: 167 AEMKF-LGVPDSIAINEAVELAKRYSGDDGHRFINGVLRRVTEQKK 211


>gi|260495022|ref|ZP_05815151.1| transcription antitermination factor NusB [Fusobacterium sp.
           3_1_33]
 gi|260197465|gb|EEW94983.1| transcription antitermination factor NusB [Fusobacterium sp.
           3_1_33]
          Length = 157

 Score =  103 bits (257), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 34/165 (20%), Positives = 75/165 (45%), Gaps = 8/165 (4%)

Query: 1   MTIQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESV 60
           M     +++ K      +AR    + ++  ++   S+ E+   +  Y      + +  + 
Sbjct: 1   MNKNFEEQEKKAKGGIRLAREEVFKLVFGAELTESSSDELKQGFSVYL---QNDEEFINA 57

Query: 61  YLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHS 120
                LE+ +  I+ +++   +I  +I    T+ W++ R+ +I  S+L  G  E +   +
Sbjct: 58  LSEKQLEFIKNSINRIVENYDNIKDVIKKN-TQNWTYERIGVIERSLLIVGTYEFL-IKN 115

Query: 121 VPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRSGCV 165
            P+EVI +E V +A ++      +FIN +L  +   E+ K  G +
Sbjct: 116 TPIEVIANEIVELAKEYGNEKSYEFINGILANI---EKAKNKGTI 157


>gi|298490714|ref|YP_003720891.1| NusB antitermination factor ['Nostoc azollae' 0708]
 gi|298232632|gb|ADI63768.1| NusB antitermination factor ['Nostoc azollae' 0708]
          Length = 213

 Score =  103 bits (257), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 29/106 (27%), Positives = 49/106 (46%), Gaps = 2/106 (1%)

Query: 53  TELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGV 112
            EL   +        + + II  V + +  ID +IS  L   W  +RL  I   IL+   
Sbjct: 108 PELIQLANQDKEVRNYAKEIIITVNENRNVIDQIISDALV-DWQVTRLAQIDRDILQIAA 166

Query: 113 LELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEE 158
            E+     VP  + I+E V +A  +   +  +FIN VL +V+ +++
Sbjct: 167 AEMKFMG-VPASIAINEAVELAKRYSGDEGHRFINGVLRRVTEQKQ 211


>gi|282850140|ref|ZP_06259519.1| ribosomal RNA small subunit methyltransferase B [Veillonella
           parvula ATCC 17745]
 gi|294793653|ref|ZP_06758790.1| ribosomal RNA small subunit methyltransferase B [Veillonella sp.
           3_1_44]
 gi|282579633|gb|EFB85037.1| ribosomal RNA small subunit methyltransferase B [Veillonella
           parvula ATCC 17745]
 gi|294455223|gb|EFG23595.1| ribosomal RNA small subunit methyltransferase B [Veillonella sp.
           3_1_44]
          Length = 451

 Score =  103 bits (257), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 39/156 (25%), Positives = 71/156 (45%), Gaps = 14/156 (8%)

Query: 12  LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71
            ++++   RL AV+AL +I+  G      + EY      +D           +D  +F  
Sbjct: 5   KTNQQQNIRLLAVKALSEINRNGAYANIKLQEYLQKYHLSD-----------LDRRFFTE 53

Query: 72  IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
           +++GV+ RK ++D +I           +L  ++  ILR G+ ++I    VP    ++E V
Sbjct: 54  LVYGVIRRKNYLDAIIVHFAKR--PLKKLSSMVVEILRLGIYQIIYMDKVPESAAVNESV 111

Query: 132 CIAHDFFYGDEPKFINAVLDKVSRKEEIKRSGCVSA 167
            +A     G    F+NAVL  V R+ +    G ++ 
Sbjct: 112 KLAKKLTRGLS-GFVNAVLRSVLRESDSISIGELAK 146


>gi|300781095|ref|ZP_07090949.1| possible transcription antitermination protein NusB
           [Corynebacterium genitalium ATCC 33030]
 gi|300532802|gb|EFK53863.1| possible transcription antitermination protein NusB
           [Corynebacterium genitalium ATCC 33030]
          Length = 217

 Score =  103 bits (257), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 26/130 (20%), Positives = 53/130 (40%), Gaps = 7/130 (5%)

Query: 24  VQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHI 83
           V  L++ +        I+ +            D  +    V  ++ R II G       I
Sbjct: 18  VDILFEAETRDVDPVAIVEDRAALA------GDPTNAVAPV-ADYTREIIAGAAAALDEI 70

Query: 84  DLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEP 143
           D  I   L++ W  +R+  +  +ILR    E++    V   + I+  + ++ ++   +  
Sbjct: 71  DNAIERFLSDNWELNRIPAVDRAILRVATWEILYNDEVEPPISIANAMEMSTEYAGDNAS 130

Query: 144 KFINAVLDKV 153
            +I+AVLD +
Sbjct: 131 PYIHAVLDDI 140


>gi|291544835|emb|CBL17944.1| transcription antitermination factor NusB [Ruminococcus sp. 18P13]
          Length = 138

 Score =  103 bits (257), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 26/147 (17%), Positives = 59/147 (40%), Gaps = 14/147 (9%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           R   R  A + +++  +      E+ +  +        +               R ++ G
Sbjct: 6   RREVRDCAFKLIFEKLLRDDPIEELYAIADEVDEITVNDQ-------------VRELVEG 52

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
            +D+ + +D +IS   + K   SR+  I  ++LR  + E++     P+   I+E V ++ 
Sbjct: 53  TLDKTEELDRIISEY-SSKRGLSRIAKINIAVLRIALYEILYDEKTPMNAAINEAVQLSQ 111

Query: 136 DFFYGDEPKFINAVLDKVSRKEEIKRS 162
            +   ++  F+N VL   +R    +  
Sbjct: 112 TYAQQEDVSFVNGVLGAYARAHSSEEG 138


>gi|119510389|ref|ZP_01629523.1| transcription antitermination protein NusB [Nodularia spumigena
           CCY9414]
 gi|119464918|gb|EAW45821.1| transcription antitermination protein NusB [Nodularia spumigena
           CCY9414]
          Length = 209

 Score =  103 bits (257), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 32/115 (27%), Positives = 53/115 (46%), Gaps = 5/115 (4%)

Query: 48  RFCADTELDVESVYLHVDLE---WFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMIL 104
           +  A  E        + D E   +   ++  V + +  ID  ISS L   W  +RL  I 
Sbjct: 96  QLGAAVEFPELIQLANQDKEVGRYAIQLVKLVNEHRVSIDEEISSALV-DWQVTRLAQID 154

Query: 105 CSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEI 159
             ILR  V E+    ++P  V I+E V +A  +   +  +FIN VL +V+ ++ +
Sbjct: 155 RDILRIAVGEMRFF-NLPDRVAINEAVELAKRYSGDEGHRFINGVLRRVTEQKAV 208


>gi|294791792|ref|ZP_06756940.1| ribosomal RNA small subunit methyltransferase B [Veillonella sp.
           6_1_27]
 gi|294457022|gb|EFG25384.1| ribosomal RNA small subunit methyltransferase B [Veillonella sp.
           6_1_27]
          Length = 451

 Score =  103 bits (257), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 39/156 (25%), Positives = 71/156 (45%), Gaps = 14/156 (8%)

Query: 12  LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71
            ++++   RL AV+AL +I+  G      + EY      +D           +D  +F  
Sbjct: 5   KTNQQQNIRLLAVKALSEINRNGAYANIKLQEYLQKYHLSD-----------LDRRFFTE 53

Query: 72  IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
           +++GV+ RK ++D +I           +L  ++  ILR G+ ++I    VP    ++E V
Sbjct: 54  LVYGVIRRKNYLDAIIVHFAKR--PLKKLSSMVVEILRLGIYQIIYMDKVPESAAVNESV 111

Query: 132 CIAHDFFYGDEPKFINAVLDKVSRKEEIKRSGCVSA 167
            +A     G    F+NAVL  V R+ +    G ++ 
Sbjct: 112 KLAKKLTRGLS-GFVNAVLRSVLRESDSISIGELAK 146


>gi|218282376|ref|ZP_03488658.1| hypothetical protein EUBIFOR_01240 [Eubacterium biforme DSM 3989]
 gi|218216662|gb|EEC90200.1| hypothetical protein EUBIFOR_01240 [Eubacterium biforme DSM 3989]
          Length = 125

 Score =  102 bits (256), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 30/139 (21%), Positives = 64/139 (46%), Gaps = 15/139 (10%)

Query: 15  RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74
            R   R+ A+Q++YQ  ++G    + +  ++  +   D +             +   +  
Sbjct: 2   NRHEQRVVAMQSVYQHLLLGKDIRKCV--FDVMKGSNDIDG------------YLYSLTM 47

Query: 75  GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134
           G ++ K+  +  I+  L + W F RL M+  +IL     E++  +  P  V+I+E + +A
Sbjct: 48  GTIENKEAFEQKINELLRDDWDFDRLSMLEQAILLISFQEIL-ANDTPKAVVINEAITLA 106

Query: 135 HDFFYGDEPKFINAVLDKV 153
             +   +  K +N VLD++
Sbjct: 107 KKYCDDNSYKLLNGVLDQL 125


>gi|159027396|emb|CAO86880.1| nusB [Microcystis aeruginosa PCC 7806]
          Length = 217

 Score =  102 bits (256), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 26/93 (27%), Positives = 45/93 (48%), Gaps = 2/93 (2%)

Query: 66  LEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEV 125
            E+   +I  V  R+  I+  ++  L   W   RL  I   IL+  V E++    +P +V
Sbjct: 117 REYALELIGTVYRRRAEIEQELTGALV-DWQLHRLPRIDRDILQIAVAEMLY-LDIPQKV 174

Query: 126 IISEYVCIAHDFFYGDEPKFINAVLDKVSRKEE 158
            I+E + +A  +   +  +FIN VL +V+ K  
Sbjct: 175 AINEAIELAKRYSDDEGYRFINGVLRRVTNKLN 207


>gi|326203177|ref|ZP_08193043.1| sun protein [Clostridium papyrosolvens DSM 2782]
 gi|325986823|gb|EGD47653.1| sun protein [Clostridium papyrosolvens DSM 2782]
          Length = 467

 Score =  102 bits (256), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 30/141 (21%), Positives = 60/141 (42%), Gaps = 13/141 (9%)

Query: 18  IARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVM 77
           +AR  A++ LY            I+E + Y   +            +D  +   +++G +
Sbjct: 23  LARETALKILY-----------DITENQAYSNISVNRHLDNDKLREIDRSFATELVYGTV 71

Query: 78  DRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDF 137
                ID +I    + K    +L   + ++LR GV +L+    +PV    +  V +A  +
Sbjct: 72  KWLLQIDYIIGKYSSVK--LKKLSPWIKNVLRLGVYQLLHTDRIPVSAACNTAVELAKRY 129

Query: 138 FYGDEPKFINAVLDKVSRKEE 158
            +    +F+NAVL  +S+  +
Sbjct: 130 GHQASSRFVNAVLRNISKNID 150


>gi|251770860|gb|EES51447.1| transcription antitermination factor (NusB) [Leptospirillum
           ferrodiazotrophum]
          Length = 180

 Score =  102 bits (256), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 33/150 (22%), Positives = 62/150 (41%), Gaps = 13/150 (8%)

Query: 3   IQDNKKDLKLSHRR--GIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESV 60
           +   ++ L  S RR    AR   +Q L+  +     + + +      +     E +    
Sbjct: 1   MTSGRETLPSSRRRALSAARGKVLQRLFAEEYESRPSPDPL-----LKDLIGWEGEDPMA 55

Query: 61  YLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHS 120
             + D  +  ++       K  ID +I   L   WS  RL  +  +ILR G+ E++   +
Sbjct: 56  NAYADRLYAEILFR-----KPEIDAVIEE-LARGWSLPRLTRVDRNILRIGLCEILFDPA 109

Query: 121 VPVEVIISEYVCIAHDFFYGDEPKFINAVL 150
           +P  V + E + +AH F   +   F+N +L
Sbjct: 110 MPFRVSVHEALDLAHRFSDPEAVSFLNGIL 139


>gi|269797911|ref|YP_003311811.1| sun protein [Veillonella parvula DSM 2008]
 gi|269094540|gb|ACZ24531.1| sun protein [Veillonella parvula DSM 2008]
          Length = 451

 Score =  102 bits (256), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 39/156 (25%), Positives = 71/156 (45%), Gaps = 14/156 (8%)

Query: 12  LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71
            ++++   RL AV+AL +I+  G      + EY      +D           +D  +F  
Sbjct: 5   KTNQQQNIRLLAVKALSEINRNGAYANIKLQEYLQKYHLSD-----------LDRRFFTE 53

Query: 72  IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
           +++GV+ RK ++D +I           +L  ++  ILR G+ ++I    VP    ++E V
Sbjct: 54  LVYGVIRRKNYLDAIIVFFAKR--PIKKLSSMVLEILRLGIYQIIYMDKVPESAAVNESV 111

Query: 132 CIAHDFFYGDEPKFINAVLDKVSRKEEIKRSGCVSA 167
            +A     G    F+NAVL  V R+ +    G ++ 
Sbjct: 112 KLAKKLTRGLS-GFVNAVLRSVLRESDSISIGELAK 146


>gi|317502725|ref|ZP_07960836.1| NusB family protein [Prevotella salivae DSM 15606]
 gi|315666169|gb|EFV05725.1| NusB family protein [Prevotella salivae DSM 15606]
          Length = 317

 Score =  102 bits (255), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 29/125 (23%), Positives = 55/125 (44%), Gaps = 3/125 (2%)

Query: 31  DIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSC 90
           +I+     + I  +E     ++ EL  E      D E+ R +    +         +S  
Sbjct: 175 EIVDTFVLKTIKRFEQAN-GSEQELLPE-YKDDEDKEFARKLFRATIINADQYQHYMSEA 232

Query: 91  LTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVL 150
            +  W F RL  +   I++  + E++   ++PV V I+EYV +A  +       +IN +L
Sbjct: 233 -SRNWDFGRLAYMDIVIMQIAIAEMLTFPNIPVSVTINEYVDLAKLYSTSKSAGYINGML 291

Query: 151 DKVSR 155
           D ++R
Sbjct: 292 DSIAR 296


>gi|261749509|ref|YP_003257195.1| antitermination protein NusB [Blattabacterium sp. (Periplaneta
           americana) str. BPLAN]
 gi|261497602|gb|ACX84052.1| antitermination protein NusB [Blattabacterium sp. (Periplaneta
           americana) str. BPLAN]
          Length = 312

 Score =  102 bits (255), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 22/93 (23%), Positives = 46/93 (49%), Gaps = 1/93 (1%)

Query: 63  HVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVP 122
             + ++   +    +  K+  + LIS  ++  W+  R+ +I   IL+  + E +   ++P
Sbjct: 205 DENKKFIVSLYRNTIFHKREFNELIS-NISNNWNIERIAIIDLIILQMAICEFLYFPNIP 263

Query: 123 VEVIISEYVCIAHDFFYGDEPKFINAVLDKVSR 155
            +  ++EY+ IA  F       FIN +LD+V +
Sbjct: 264 PKATMNEYIEIAKIFCMDKSKTFINGILDQVFK 296


>gi|254468502|ref|ZP_05081908.1| transcription antitermination factor NusB [beta proteobacterium
           KB13]
 gi|207087312|gb|EDZ64595.1| transcription antitermination factor NusB [beta proteobacterium
           KB13]
          Length = 127

 Score =  102 bits (255), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 28/104 (26%), Positives = 50/104 (48%), Gaps = 2/104 (1%)

Query: 53  TELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGV 112
            ++  +  Y   D E++  +I G+ +  Q I   + + + +K     L+ I  SIL    
Sbjct: 19  KDILEDPDYCRCDEEFYNSLIDGIKENYQEILEDLDNFMDKKK--EELNPIELSILVVAY 76

Query: 113 LELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRK 156
            EL     +P +V I+E + I   F   +  KF+N  LD+V++K
Sbjct: 77  YELKTRVDIPFKVSINEALEITKSFGGQESFKFVNGSLDRVAKK 120


>gi|218246294|ref|YP_002371665.1| transcription antitermination protein NusB [Cyanothece sp. PCC
           8801]
 gi|254772631|sp|B7K4P4|NUSB_CYAP8 RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|218166772|gb|ACK65509.1| NusB antitermination factor [Cyanothece sp. PCC 8801]
          Length = 211

 Score =  102 bits (255), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 27/97 (27%), Positives = 47/97 (48%), Gaps = 2/97 (2%)

Query: 66  LEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEV 125
            E+   +I  V  R+  ID  + + L   W  +RL  I   ILR  V E++    +P +V
Sbjct: 117 REYALELIGAVNRRRTEIDQQLEAVLV-DWQLNRLPKIDRDILRIAVAEILF-LEIPNKV 174

Query: 126 IISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRS 162
            I+E + +A  +   +  +FIN VL + + +  I  +
Sbjct: 175 AINEAIEMAKRYSDDEGYRFINGVLRRFTERLRITNN 211


>gi|146299958|ref|YP_001194549.1| transcription termination factor-like protein [Flavobacterium
           johnsoniae UW101]
 gi|146154376|gb|ABQ05230.1| Transcription termination factor-like protein [Flavobacterium
           johnsoniae UW101]
          Length = 303

 Score =  102 bits (254), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 28/124 (22%), Positives = 56/124 (45%), Gaps = 2/124 (1%)

Query: 40  IISEYETYRFCADTELDVESVYLHV-DLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFS 98
           II + +  +     E  V  +Y  V D ++ + +    +  +  +        T  W   
Sbjct: 172 IIKQLKAIKTDNPDEFRVPKLYKDVEDKDFAKDLFRRTVLNEAVLAKEYDDK-TPNWDSE 230

Query: 99  RLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEE 158
           R+  I   IL+  + E ++  S+PV+V ++EY+ IA ++       FIN +LD + ++ E
Sbjct: 231 RIAEIDTIILKMAICEFLKFPSIPVKVTLNEYLEIAKEYSTPKSSIFINGILDNLVKELE 290

Query: 159 IKRS 162
             + 
Sbjct: 291 ASKK 294


>gi|91216596|ref|ZP_01253562.1| putative N utilization substance protein [Psychroflexus torquis
           ATCC 700755]
 gi|91185390|gb|EAS71767.1| putative N utilization substance protein [Psychroflexus torquis
           ATCC 700755]
          Length = 302

 Score =  102 bits (254), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 30/133 (22%), Positives = 61/133 (45%), Gaps = 4/133 (3%)

Query: 37  TTEIISEYETYRFCADTELDVESVYLHV-DLEWFRVIIHGVMDRKQHIDLLISSCLTEKW 95
                 ++   +  +D  + V  +Y +V D  + + +    +     +   I+   T  W
Sbjct: 168 VNTTFLKFLQKQKESDEVITVPRLYKNVEDENFAKELFTKTLLANDQLTE-ITKNKTPNW 226

Query: 96  SFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSR 155
              R+  I   +++  + E ++  S+PV V I+EY+ +A ++       FIN VLD VS+
Sbjct: 227 DQDRIADIDSILIKMALCEFLKFPSIPVRVTINEYLELAKEYSTPKSSTFINGVLDTVSK 286

Query: 156 KEEIKRSGCVSAI 168
             E + +G ++ I
Sbjct: 287 --EYQTNGKINKI 297


>gi|296133297|ref|YP_003640544.1| sun protein [Thermincola sp. JR]
 gi|296031875|gb|ADG82643.1| sun protein [Thermincola potens JR]
          Length = 451

 Score =  102 bits (254), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 28/142 (19%), Positives = 58/142 (40%), Gaps = 13/142 (9%)

Query: 17  GIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGV 76
             AR  A++ +YQ+D  G  +   +++              +      D  +   +++G 
Sbjct: 2   RSARKLALEVIYQVDREGAYSNIALNKVLE-----------KYQPEKKDRAFITELVYGT 50

Query: 77  MDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHD 136
           + R   +D +    ++       L   + +I+R G+ ++     VP     +E V +A  
Sbjct: 51  LKRLNTLDWIAGRFVSR--PLDSLTPWIRNIIRMGIYQIFFMDKVPNSAACNESVNLARK 108

Query: 137 FFYGDEPKFINAVLDKVSRKEE 158
           F +    KF+N VL  V R ++
Sbjct: 109 FGHQGTVKFVNGVLRNVVRHKD 130


>gi|294783685|ref|ZP_06749009.1| transcription antitermination factor NusB [Fusobacterium sp.
           1_1_41FAA]
 gi|294480563|gb|EFG28340.1| transcription antitermination factor NusB [Fusobacterium sp.
           1_1_41FAA]
          Length = 152

 Score =  102 bits (254), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 23/141 (16%), Positives = 66/141 (46%), Gaps = 5/141 (3%)

Query: 17  GIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGV 76
            + R    + ++ ++    ++ E+   ++ Y    +   D  S      L++ +  + G+
Sbjct: 17  RLVREELFKLVFGVEATESTSEELEKAFDIYLSNNE---DFVSTLSENQLKFLQTSVKGI 73

Query: 77  MDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHD 136
            +   +I   I +  T+ W++ R+ ++  ++L     E ++  + P+EV+ +E V +A +
Sbjct: 74  SENYDNIKDTIKTN-TQNWAYERIGLVERTLLIIATYEFLKA-NTPIEVVANETVELAKE 131

Query: 137 FFYGDEPKFINAVLDKVSRKE 157
           +      +F+N +L  + + +
Sbjct: 132 YGNEKSYEFVNGILANIGKTK 152


>gi|134299563|ref|YP_001113059.1| sun protein [Desulfotomaculum reducens MI-1]
 gi|134052263|gb|ABO50234.1| sun protein [Desulfotomaculum reducens MI-1]
          Length = 453

 Score =  102 bits (254), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 30/139 (21%), Positives = 61/139 (43%), Gaps = 13/139 (9%)

Query: 19  ARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMD 78
           AR  A+             ++ + +   Y   A  +L  +     +D  +   I++GV+ 
Sbjct: 6   ARELAL-----------LVSKAVEDEGAYANLALNKLLEQYQPGKLDRAFATEIVYGVLR 54

Query: 79  RKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFF 138
               ID +++  L +    +   + + +ILR G  +++    VP     +E V +A  + 
Sbjct: 55  NLNTIDWVLAHFLKQ--PLASQTVWIRNILRMGTYQIMFMPRVPDSAACNESVNLAKKYG 112

Query: 139 YGDEPKFINAVLDKVSRKE 157
           +   PKF+N VL  V+R++
Sbjct: 113 HQGAPKFVNGVLRNVARQQ 131


>gi|126656189|ref|ZP_01727573.1| transcription antitermination protein NusB [Cyanothece sp. CCY0110]
 gi|126622469|gb|EAZ93175.1| transcription antitermination protein NusB [Cyanothece sp. CCY0110]
          Length = 209

 Score =  101 bits (253), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 34/138 (24%), Positives = 57/138 (41%), Gaps = 13/138 (9%)

Query: 27  LYQIDIIGCSTTEI---------ISEYETYRFCADTELDV--ESVYLHVDLEWFRVIIHG 75
           L+Q +I   +             +++    R     E     +    +   E+   +I  
Sbjct: 67  LFQYEIKATTLESAKTMIKDALTLTQEAINRLANAVEFPEIIQLASQYEVREYTLELIGT 126

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
           +  R+Q ID  + + L + W   RL  I   ILR  V E++    VP +V I+E V +A 
Sbjct: 127 INRRRQEIDQQLEAVL-KDWQLRRLAKIDQDILRLAVAEILF-LDVPEKVAINEAVELAK 184

Query: 136 DFFYGDEPKFINAVLDKV 153
            +   D  +FIN VL + 
Sbjct: 185 RYSDDDGYRFINGVLRRF 202


>gi|326803320|ref|YP_004321138.1| transcription antitermination factor NusB [Aerococcus urinae
           ACS-120-V-Col10a]
 gi|326650660|gb|AEA00843.1| transcription antitermination factor NusB [Aerococcus urinae
           ACS-120-V-Col10a]
          Length = 194

 Score =  101 bits (253), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 39/185 (21%), Positives = 68/185 (36%), Gaps = 45/185 (24%)

Query: 20  RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLE------------ 67
           R  AV  LYQ  ++  ST E   E   Y      +L+ +  Y  +D E            
Sbjct: 9   RELAVLTLYQEAMVPESTKE---ESFAYLLANLDDLEDQLSYEEIDQEQLDQLKSQGLPL 65

Query: 68  ----------------------------WFRVIIHGVMDRKQHIDLLISSCLTEKWSFSR 99
                                       +++ ++  +   ++ +D  I   +  KWS +R
Sbjct: 66  EKSQGQMKSNKRFNQAPVSEDEELSLPPYYQELLDRIASHQESVDQAIEDHIQGKWSLNR 125

Query: 100 LDMILCSILRAGVLELIE--CHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKE 157
           L+ +  +ILR G  E++      VP  V + E + +A  +      +FIN VL  +    
Sbjct: 126 LEAMNLAILRVGAYEILYGDHDRVPGVVAVDEAIHLARRYSDEASRRFINGVLSSILATV 185

Query: 158 EIKRS 162
           E K+ 
Sbjct: 186 EDKQP 190


>gi|313203078|ref|YP_004041735.1| nusb antitermination factor [Paludibacter propionicigenes WB4]
 gi|312442394|gb|ADQ78750.1| NusB antitermination factor [Paludibacter propionicigenes WB4]
          Length = 316

 Score =  101 bits (253), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 25/111 (22%), Positives = 51/111 (45%), Gaps = 1/111 (0%)

Query: 52  DTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAG 111
           D +  +       D E+ R ++  V+ +   +  +I    T+ W   R+  +   I+   
Sbjct: 195 DEQPLLPMFKDEEDAEFARKLMRSVLTKGPKLREMIDVN-TKNWELDRIAFMDIVIMEVA 253

Query: 112 VLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRS 162
           + EL++  ++PV V ++EY+ IA  +       FIN VLD +  + + +  
Sbjct: 254 LAELMDFPTIPVNVTLNEYIEIAKTYSTEKSGTFINGVLDNIVGQLKSENK 304


>gi|237739332|ref|ZP_04569813.1| transcription antitermination protein NusB [Fusobacterium sp.
           2_1_31]
 gi|229422940|gb|EEO37987.1| transcription antitermination protein NusB [Fusobacterium sp.
           2_1_31]
          Length = 152

 Score =  101 bits (252), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 23/141 (16%), Positives = 66/141 (46%), Gaps = 5/141 (3%)

Query: 17  GIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGV 76
            + R    + ++ ++    ++ E+   ++ Y    +   D  S      L++ +  + G+
Sbjct: 17  RLVREELFKIVFGVEATESTSEELEKAFDIYLSNNE---DFVSTLSESQLKFLQTSVKGI 73

Query: 77  MDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHD 136
            +   +I   I +  T+ W++ R+ ++  ++L     E ++  + P+EV+ +E V +A +
Sbjct: 74  SENYDNIKDTIKAN-TQNWAYERIGLVERTLLIIATYEFLKA-NTPIEVVANETVELAKE 131

Query: 137 FFYGDEPKFINAVLDKVSRKE 157
           +      +F+N +L  + + +
Sbjct: 132 YGNEKSYEFVNGILANIGKTK 152


>gi|149370659|ref|ZP_01890348.1| putative N utilization substance protein [unidentified eubacterium
           SCB49]
 gi|149356210|gb|EDM44767.1| putative N utilization substance protein [unidentified eubacterium
           SCB49]
          Length = 339

 Score =  101 bits (252), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 23/105 (21%), Positives = 49/105 (46%), Gaps = 1/105 (0%)

Query: 52  DTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAG 111
           ++ L  +      D E+   +   V+  ++ +  ++    T  W   R+  I   I++ G
Sbjct: 221 ESSLIPDLYKNEDDREYATNLFRKVVLNEERLSNMVDGK-TPNWDQDRIADIDLIIIKMG 279

Query: 112 VLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRK 156
           + E +   S+P    I+EY+ I+ ++       FIN +LDK+ ++
Sbjct: 280 IAEFLYFPSIPTRATINEYLEISKEYSTPKSSIFINGILDKIVKE 324


>gi|166365064|ref|YP_001657337.1| transcription antitermination protein NusB [Microcystis aeruginosa
           NIES-843]
 gi|254772647|sp|B0JGZ3|NUSB_MICAN RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|166087437|dbj|BAG02145.1| N utilization substance protein B homolog [Microcystis aeruginosa
           NIES-843]
          Length = 217

 Score =  101 bits (252), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 26/93 (27%), Positives = 45/93 (48%), Gaps = 2/93 (2%)

Query: 66  LEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEV 125
            E+   +I  V  R+  I+  ++  L   W   RL  I   IL+  V E++    +P +V
Sbjct: 117 REYALELIGTVYRRRAEIEQELTGALV-DWQLHRLPRIDRDILQIAVAEMLY-LDLPQKV 174

Query: 126 IISEYVCIAHDFFYGDEPKFINAVLDKVSRKEE 158
            I+E + +A  +   +  +FIN VL +V+ K  
Sbjct: 175 AINEAIELAKRYSDDEGYRFINGVLRRVTNKLN 207


>gi|309804286|ref|ZP_07698363.1| transcription antitermination factor NusB [Lactobacillus iners
           LactinV 11V1-d]
 gi|312872493|ref|ZP_07732562.1| transcription antitermination factor NusB [Lactobacillus iners LEAF
           2062A-h1]
 gi|315653399|ref|ZP_07906321.1| transcription antitermination protein NusB [Lactobacillus iners
           ATCC 55195]
 gi|308163689|gb|EFO65959.1| transcription antitermination factor NusB [Lactobacillus iners
           LactinV 11V1-d]
 gi|311092075|gb|EFQ50450.1| transcription antitermination factor NusB [Lactobacillus iners LEAF
           2062A-h1]
 gi|315489324|gb|EFU78964.1| transcription antitermination protein NusB [Lactobacillus iners
           ATCC 55195]
          Length = 133

 Score =  101 bits (252), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 33/134 (24%), Positives = 56/134 (41%), Gaps = 10/134 (7%)

Query: 20  RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79
           R+ A+QALY          + + E+E         +DV  +    D  +   I+ GVM  
Sbjct: 7   RVIAMQALY--------LADQVHEHEDVDAIKKKTMDVLDIKEFPDYAY--EILQGVMKE 56

Query: 80  KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139
           K  ID  ++  L + W+  RL+ I   IL  G+ E+     +     ++E + +  +F  
Sbjct: 57  KSSIDANLTKYLKKGWTLERLNKIDLVILEVGLFEIQNSKVIKPVSALNEALNMCDEFSS 116

Query: 140 GDEPKFINAVLDKV 153
                FIN +L   
Sbjct: 117 AKSKGFINGILANF 130


>gi|288928412|ref|ZP_06422259.1| NusB family protein [Prevotella sp. oral taxon 317 str. F0108]
 gi|288331246|gb|EFC69830.1| NusB family protein [Prevotella sp. oral taxon 317 str. F0108]
          Length = 347

 Score =  101 bits (252), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 26/125 (20%), Positives = 53/125 (42%), Gaps = 3/125 (2%)

Query: 31  DIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSC 90
           +I+     + I  ++         L         D ++ R +    +   +     +S  
Sbjct: 150 EIVDTFVLKTIKRFDPANKAKQELLPEYKD--EEDKDFARKLFRSTILNGEQYQRYMSEN 207

Query: 91  LTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVL 150
            +  W FSRL  +   I++  + E++   ++PV V I+EYV +A  +       +IN +L
Sbjct: 208 -SRNWDFSRLAYMDVVIMQIAIAEMLNFPNIPVSVTINEYVELAKLYSTHRSGGYINGML 266

Query: 151 DKVSR 155
           D ++R
Sbjct: 267 DTIAR 271


>gi|22096363|sp|P74395|NUSB_SYNY3 RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
          Length = 221

 Score =  101 bits (252), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 33/105 (31%), Positives = 48/105 (45%), Gaps = 5/105 (4%)

Query: 66  LEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEV 125
            ++   +I  V  R+Q ID  +   +   W  SRL  I   ILR  + EL     VP +V
Sbjct: 120 RKFALELIGTVCRRRQQIDEQLQEAMV-DWQLSRLAKIDQDILRLAIAELDY-LGVPQKV 177

Query: 126 IISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRSGCVSAITQ 170
            I+E V +A  +   D  +FIN VL +V+   E K  G      +
Sbjct: 178 AINEAVELAKRYSGQDGHRFINGVLRRVT---EKKTDGAPVTPGE 219


>gi|259501554|ref|ZP_05744456.1| conserved hypothetical protein [Lactobacillus iners DSM 13335]
 gi|302191472|ref|ZP_07267726.1| transcription antitermination factor NusB [Lactobacillus iners
           AB-1]
 gi|309805466|ref|ZP_07699511.1| transcription antitermination factor NusB [Lactobacillus iners
           LactinV 09V1-c]
 gi|309808800|ref|ZP_07702685.1| transcription antitermination factor NusB [Lactobacillus iners
           LactinV 01V1-a]
 gi|309809548|ref|ZP_07703406.1| transcription antitermination factor NusB [Lactobacillus iners SPIN
           2503V10-D]
 gi|312871882|ref|ZP_07731966.1| transcription antitermination factor NusB [Lactobacillus iners LEAF
           3008A-a]
 gi|312874396|ref|ZP_07734426.1| transcription antitermination factor NusB [Lactobacillus iners LEAF
           2052A-d]
 gi|312874533|ref|ZP_07734558.1| transcription antitermination factor NusB [Lactobacillus iners LEAF
           2053A-b]
 gi|325911876|ref|ZP_08174280.1| transcription antitermination factor NusB [Lactobacillus iners UPII
           143-D]
 gi|325913448|ref|ZP_08175814.1| transcription antitermination factor NusB [Lactobacillus iners UPII
           60-B]
 gi|329919881|ref|ZP_08276819.1| transcription antitermination factor NusB [Lactobacillus iners SPIN
           1401G]
 gi|259167072|gb|EEW51567.1| conserved hypothetical protein [Lactobacillus iners DSM 13335]
 gi|308165117|gb|EFO67355.1| transcription antitermination factor NusB [Lactobacillus iners
           LactinV 09V1-c]
 gi|308167926|gb|EFO70059.1| transcription antitermination factor NusB [Lactobacillus iners
           LactinV 01V1-a]
 gi|308170220|gb|EFO72255.1| transcription antitermination factor NusB [Lactobacillus iners SPIN
           2503V10-D]
 gi|311089924|gb|EFQ48343.1| transcription antitermination factor NusB [Lactobacillus iners LEAF
           2053A-b]
 gi|311090008|gb|EFQ48422.1| transcription antitermination factor NusB [Lactobacillus iners LEAF
           2052A-d]
 gi|311092604|gb|EFQ50964.1| transcription antitermination factor NusB [Lactobacillus iners LEAF
           3008A-a]
 gi|325476382|gb|EGC79544.1| transcription antitermination factor NusB [Lactobacillus iners UPII
           143-D]
 gi|325477217|gb|EGC80363.1| transcription antitermination factor NusB [Lactobacillus iners UPII
           60-B]
 gi|328936971|gb|EGG33401.1| transcription antitermination factor NusB [Lactobacillus iners SPIN
           1401G]
          Length = 133

 Score =  101 bits (252), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 33/134 (24%), Positives = 56/134 (41%), Gaps = 10/134 (7%)

Query: 20  RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79
           R+ A+QALY          + + E+E         +DV  +    D  +   I+ GVM  
Sbjct: 7   RVIAMQALY--------LADQVHEHEDVDAIKKKTMDVLDIKEFPDYAY--EILQGVMKE 56

Query: 80  KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139
           K  ID  ++  L + W+  RL+ I   IL  G+ E+     +     ++E + +  +F  
Sbjct: 57  KSSIDANLAKYLKKGWTLERLNKIDLVILEVGLFEIQNSKVIKPVSALNEALNMCDEFSS 116

Query: 140 GDEPKFINAVLDKV 153
                FIN +L   
Sbjct: 117 AKSKGFINGILANF 130


>gi|325104804|ref|YP_004274458.1| NusB antitermination factor [Pedobacter saltans DSM 12145]
 gi|324973652|gb|ADY52636.1| NusB antitermination factor [Pedobacter saltans DSM 12145]
          Length = 313

 Score =  101 bits (252), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 35/148 (23%), Positives = 62/148 (41%), Gaps = 7/148 (4%)

Query: 21  LAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHV------DLEWFRVIIH 74
             A  AL +  I      +++            E+D  S    +      D E+   + H
Sbjct: 158 ELAQNALEEKHINWQVDQDVLQAMVAKTLKNFDEVDGNSKLAQISSNWIEDREFIIDLFH 217

Query: 75  GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134
             +        +I+   T+ W   R+ M+   I++  + ELI   S+PV+V I+EY+ IA
Sbjct: 218 KTLANDASCQEMIAGK-TKNWEADRIAMMDILIMKMALAELIYFSSIPVKVTINEYLEIA 276

Query: 135 HDFFYGDEPKFINAVLDKVSRKEEIKRS 162
            +F       FIN +LDK+  + + +  
Sbjct: 277 KEFSTPKSNVFINGILDKILGELQAQNK 304


>gi|288799718|ref|ZP_06405177.1| NusB family protein [Prevotella sp. oral taxon 299 str. F0039]
 gi|288332966|gb|EFC71445.1| NusB family protein [Prevotella sp. oral taxon 299 str. F0039]
          Length = 322

 Score =  101 bits (252), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 27/125 (21%), Positives = 55/125 (44%), Gaps = 3/125 (2%)

Query: 31  DIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSC 90
           +++     + I +++      D +  +       D E+ R +    +         +S  
Sbjct: 175 EVVDTFVIKTIKKFDEAN--KDQQELLPEYRDVEDKEFARKLFRATILNADQYQSYMSET 232

Query: 91  LTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVL 150
            +  W FSRL  +   I++  + E++   S+PV V I+EYV +A  +       +IN +L
Sbjct: 233 -SRNWDFSRLAYMDVVIMQIAIAEMLTFPSIPVSVTINEYVNLAKLYSTSRSGGYINGML 291

Query: 151 DKVSR 155
           D ++R
Sbjct: 292 DAIAR 296


>gi|307150111|ref|YP_003885495.1| NusB antitermination factor [Cyanothece sp. PCC 7822]
 gi|306980339|gb|ADN12220.1| NusB antitermination factor [Cyanothece sp. PCC 7822]
          Length = 212

 Score =  101 bits (252), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 30/97 (30%), Positives = 51/97 (52%), Gaps = 2/97 (2%)

Query: 66  LEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEV 125
            E+   II  V  R++ I+  +++ +   W  SRL  I   ILR  V E++    VP +V
Sbjct: 117 REYAVEIIGTVFRRQKEIEQQLATGMV-DWQLSRLPKIDRDILRIAVAEMLF-LEVPQKV 174

Query: 126 IISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRS 162
            I+E V IA  +   +  +FIN VL +V+ + +++  
Sbjct: 175 AINEAVEIAKRYSDEEGYRFINGVLRRVTEQLKLEAK 211


>gi|282891352|ref|ZP_06299854.1| hypothetical protein pah_c050o153 [Parachlamydia acanthamoebae str.
           Hall's coccus]
 gi|281498849|gb|EFB41166.1| hypothetical protein pah_c050o153 [Parachlamydia acanthamoebae str.
           Hall's coccus]
          Length = 187

 Score =  101 bits (252), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 33/142 (23%), Positives = 67/142 (47%), Gaps = 14/142 (9%)

Query: 20  RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEW-FRVIIHGVMD 78
           R      LY  D    S  E++            EL ++ + +     +     +  V++
Sbjct: 9   REVVFVLLYSQDCGRVSEQELV------------ELVMKELAVTKKTAYSALEKVELVLE 56

Query: 79  RKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFF 138
           +K  ID LI+   + ++ F R+  +  ++LR G+ E++   S+P +V I+E + ++  F 
Sbjct: 57  KKAEIDDLIA-NTSREYRFERIQTVEKNVLRLGIYEMLFDDSIPPKVAIAEAIRLSRKFS 115

Query: 139 YGDEPKFINAVLDKVSRKEEIK 160
             +   F+NA+LD + + +E K
Sbjct: 116 TPESATFVNALLDHIYQTKEGK 137


>gi|17229252|ref|NP_485800.1| transcription antitermination protein NusB [Nostoc sp. PCC 7120]
 gi|22095953|sp|Q8YW56|NUSB_ANASP RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|17130850|dbj|BAB73459.1| transcription termination factor [Nostoc sp. PCC 7120]
          Length = 211

 Score =  101 bits (252), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 31/115 (26%), Positives = 54/115 (46%), Gaps = 5/115 (4%)

Query: 48  RFCADTELDVESVYLHVDLE---WFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMIL 104
           +  A  E        + D E   +   ++  + + +  ID  I+S L   W  +RL  I 
Sbjct: 96  QLGASVEFPELIQLANQDKEVGRYAIKLVKIINEERSVIDEQITSALV-DWQVTRLAQID 154

Query: 105 CSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEI 159
             ILR  V E++   ++P  V I+E V +A  +   +  +FIN VL +VS +++ 
Sbjct: 155 RDILRIAVAEMMFF-NLPNSVAINEAVELAKRYSGDEGHRFINGVLRRVSDQKKA 208


>gi|329955547|ref|ZP_08296455.1| transcription antitermination factor NusB [Bacteroides clarus YIT
           12056]
 gi|328525950|gb|EGF52974.1| transcription antitermination factor NusB [Bacteroides clarus YIT
           12056]
          Length = 308

 Score =  100 bits (251), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 32/147 (21%), Positives = 62/147 (42%), Gaps = 10/147 (6%)

Query: 25  QALYQI----DIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRK 80
           Q+LY      +I+     + I  ++        +  +       D E+ R +    +   
Sbjct: 167 QSLY-WNDDKEIVDTFVLKTIKRFDEKNGA--NQALLPEFKDDEDQEFARRLFRRTILNC 223

Query: 81  QHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYG 140
            +   LIS   T  W   R+  +   I++  + E++   ++PV V ++EYV IA  +   
Sbjct: 224 DYYRHLISEN-TRNWDLDRVAFMDVVIMQCALAEILSFPNIPVSVSLNEYVDIAKVYSTT 282

Query: 141 DEPKFINAVLDKVSRKEEIKRSGCVSA 167
               F+N  LD + +  E+K+ G +S 
Sbjct: 283 KSGSFVNGTLDGIVK--ELKKEGKLSK 307


>gi|19704937|ref|NP_602432.1| transcription antitermination protein NusB [Fusobacterium nucleatum
           subsp. nucleatum ATCC 25586]
 gi|296329192|ref|ZP_06871693.1| transcription antitermination factor NusB [Fusobacterium nucleatum
           subsp. nucleatum ATCC 23726]
 gi|22095941|sp|Q8RII1|NUSB_FUSNN RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|19712836|gb|AAL93731.1| N utilization substance protein B [Fusobacterium nucleatum subsp.
           nucleatum ATCC 25586]
 gi|296153548|gb|EFG94365.1| transcription antitermination factor NusB [Fusobacterium nucleatum
           subsp. nucleatum ATCC 23726]
          Length = 153

 Score =  100 bits (251), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 27/158 (17%), Positives = 72/158 (45%), Gaps = 5/158 (3%)

Query: 1   MTIQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESV 60
           M     +++ K      +AR    + ++ ++    ++ E+   ++ Y   ++   ++   
Sbjct: 1   MNKNFEEQEKKAKGGVRLAREEVFKLVFGVEATESASEELKQAFDIYLQNSE---ELIGT 57

Query: 61  YLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHS 120
                LE+ +  I G+     +I  +I    T+ W++ R+ ++  ++L     E I   +
Sbjct: 58  LNENQLEFLKSSIDGIAKNYDNIKDIIKKN-TQNWAYERIGVVERALLIVATYEFIF-KN 115

Query: 121 VPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEE 158
            P+EVI +E + +A ++      +F+N +L  + + ++
Sbjct: 116 APIEVIANEIIELAKEYGNEKSYEFVNGILANIEKSKK 153


>gi|317133047|ref|YP_004092361.1| sun protein [Ethanoligenens harbinense YUAN-3]
 gi|315471026|gb|ADU27630.1| sun protein [Ethanoligenens harbinense YUAN-3]
          Length = 436

 Score =  100 bits (251), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 30/139 (21%), Positives = 57/139 (41%), Gaps = 13/139 (9%)

Query: 18  IARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVM 77
            AR  A+  L +++     +              D EL+ ++     D      +++GV+
Sbjct: 3   QAREVALSVLLRMEQDDSYS----------NLLLDAELE-KAALSRRDAALATALVYGVV 51

Query: 78  DRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDF 137
            R+  +D L+ +         ++  +L +ILR G  +L     +P    ++E V +A   
Sbjct: 52  ARRITLDYLLETA--SGRPVQKMQPVLRAILRLGAYQLCYLDKIPARAAVNEAVQLAKKR 109

Query: 138 FYGDEPKFINAVLDKVSRK 156
             G    F+N VL  + RK
Sbjct: 110 HLGHASGFVNGVLRGLDRK 128


>gi|260912453|ref|ZP_05918990.1| N utilization substance protein NusB [Prevotella sp. oral taxon 472
           str. F0295]
 gi|260633425|gb|EEX51578.1| N utilization substance protein NusB [Prevotella sp. oral taxon 472
           str. F0295]
          Length = 372

 Score =  100 bits (251), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 26/125 (20%), Positives = 52/125 (41%), Gaps = 3/125 (2%)

Query: 31  DIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSC 90
           +I+     + I  ++         L         D ++ R +    +         +S  
Sbjct: 175 EIVDTFVLKTIKRFDPANKAKQELLPEYKD--EEDKDFARKLFRSTILNADQYQRYMSEN 232

Query: 91  LTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVL 150
            +  W FSRL  +   I++  + E++   ++PV V I+EYV +A  +       +IN +L
Sbjct: 233 -SRNWDFSRLAYMDVVIMQIAIAEMLTFPNIPVSVTINEYVELAKLYSTHRSGGYINGML 291

Query: 151 DKVSR 155
           D ++R
Sbjct: 292 DTIAR 296


>gi|295425233|ref|ZP_06817936.1| transcription antitermination factor NusB [Lactobacillus
           amylolyticus DSM 11664]
 gi|295065009|gb|EFG55914.1| transcription antitermination factor NusB [Lactobacillus
           amylolyticus DSM 11664]
          Length = 131

 Score =  100 bits (251), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 29/139 (20%), Positives = 59/139 (42%), Gaps = 11/139 (7%)

Query: 17  GIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGV 76
             +R  A+QA++   +         +E E           VE + L     + + +I GV
Sbjct: 4   HESRKVAMQAIF---LANQDPELTTAEVEVKT--------VEMLDLEQLSAYSKTLIEGV 52

Query: 77  MDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHD 136
           M ++  +   I++ L + W   R++ I  +IL   + E+ +   +  +  ++E + +  D
Sbjct: 53  MLKRDELKEAIAAHLKKGWRIERVNPITIAILEIALYEIKDSAEIEPKAAVNEALNLCDD 112

Query: 137 FFYGDEPKFINAVLDKVSR 155
           F   D   FIN +L    +
Sbjct: 113 FTDPDAKPFINGILANFVK 131


>gi|218441932|ref|YP_002380261.1| transcription antitermination protein NusB [Cyanothece sp. PCC
           7424]
 gi|254772630|sp|B7KFR8|NUSB_CYAP7 RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|218174660|gb|ACK73393.1| NusB antitermination factor [Cyanothece sp. PCC 7424]
          Length = 212

 Score =  100 bits (251), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 30/95 (31%), Positives = 49/95 (51%), Gaps = 2/95 (2%)

Query: 66  LEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEV 125
            E+   II  V  R+  I+  +++ +   W  +RL  I   ILR  V E+I    VP +V
Sbjct: 117 REYALEIIQTVYRRQTEIEQELATVMV-DWQLNRLPKIDRDILRIAVAEMIF-LEVPQKV 174

Query: 126 IISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIK 160
            I+E V IA  +   +  +FIN VL +V+ + + +
Sbjct: 175 AINEAVEIAKRYSDEEGYRFINGVLRRVTERLKTE 209


>gi|319901555|ref|YP_004161283.1| NusB antitermination factor [Bacteroides helcogenes P 36-108]
 gi|319416586|gb|ADV43697.1| NusB antitermination factor [Bacteroides helcogenes P 36-108]
          Length = 308

 Score =  100 bits (250), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 35/147 (23%), Positives = 64/147 (43%), Gaps = 10/147 (6%)

Query: 25  QALYQI----DIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRK 80
           Q+LY      +I+     + I  +E     A+ EL  E      D E+ R +    +   
Sbjct: 167 QSLY-WNDDKEIVDTFVLKTIKRFEEKN-GANQELLPE-FKDDEDQEFARRLFRRTILNC 223

Query: 81  QHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYG 140
            +   LIS   T  W   R+  +   I++  + E++   ++PV V ++EYV IA  +   
Sbjct: 224 DYYRHLISEN-TRNWDLDRVAFMDVIIMQCALAEILSFPNIPVSVSLNEYVDIAKVYSTA 282

Query: 141 DEPKFINAVLDKVSRKEEIKRSGCVSA 167
               F+N  LD +    ++K+ G ++ 
Sbjct: 283 KSGSFVNGTLDGIV--NQLKKEGKLTK 307


>gi|238019375|ref|ZP_04599801.1| hypothetical protein VEIDISOL_01239 [Veillonella dispar ATCC 17748]
 gi|237864074|gb|EEP65364.1| hypothetical protein VEIDISOL_01239 [Veillonella dispar ATCC 17748]
          Length = 451

 Score =  100 bits (250), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 39/148 (26%), Positives = 67/148 (45%), Gaps = 14/148 (9%)

Query: 20  RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79
           RL AV+AL  I+  G      + EY      +D           +D  +F  +++GV+ R
Sbjct: 13  RLLAVKALSDINRNGAYANIKLQEYLQKYHLSD-----------LDRRFFTELVYGVIRR 61

Query: 80  KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139
           K ++D +I           +L  ++  ILR G+ ++I    VP    ++E V +A +   
Sbjct: 62  KNYLDAIIIHFAKR--PLKKLSSMVVEILRLGIYQIIYMDKVPESAAVNESVKLAKNLTR 119

Query: 140 GDEPKFINAVLDKVSRKEEIKRSGCVSA 167
           G    F+NAVL  V R+ +    G ++ 
Sbjct: 120 GLS-GFVNAVLRSVLRESDSISIGELAK 146


>gi|332293207|ref|YP_004431816.1| NusB antitermination factor [Krokinobacter diaphorus 4H-3-7-5]
 gi|332171293|gb|AEE20548.1| NusB antitermination factor [Krokinobacter diaphorus 4H-3-7-5]
          Length = 314

 Score =  100 bits (250), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 23/99 (23%), Positives = 51/99 (51%), Gaps = 1/99 (1%)

Query: 63  HVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVP 122
             DL +   ++   +  ++ +   IS   T  W   R+  +   +++  + E ++  ++P
Sbjct: 207 DEDLLFGTTLLEKTIANEEFLSSEISEN-TPNWDKERIADVDMVLIKMALCEFLKFPTIP 265

Query: 123 VEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKR 161
           V+V I+EY+ IA ++       FIN +LDK+ ++ E ++
Sbjct: 266 VKVTINEYLEIAKEYSTPKSSIFINGILDKLVKQYESEK 304


>gi|255692806|ref|ZP_05416481.1| NusB family protein [Bacteroides finegoldii DSM 17565]
 gi|260621435|gb|EEX44306.1| NusB family protein [Bacteroides finegoldii DSM 17565]
          Length = 308

 Score =  100 bits (250), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 35/147 (23%), Positives = 66/147 (44%), Gaps = 10/147 (6%)

Query: 25  QALYQI----DIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRK 80
           Q+LY      +I+     + I  ++  +  A+ EL  E      D E+ R +    +   
Sbjct: 167 QSLY-WNDDKEIVDTFVLKTIKRFDEKK-GANQELLPE-FKDDEDQEFARRLFRRTILNS 223

Query: 81  QHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYG 140
            +   LIS   T+ W   R+  +   I++  + E++   ++PV V ++EYV IA  +   
Sbjct: 224 DYYRHLISEN-TKNWDLDRIAFMDIIIMQTALAEILSFPNIPVSVSLNEYVEIAKLYSTS 282

Query: 141 DEPKFINAVLDKVSRKEEIKRSGCVSA 167
               FIN  LD +    ++K+ G ++ 
Sbjct: 283 KSGSFINGTLDGIV--NQLKKEGKLTK 307


>gi|260892752|ref|YP_003238849.1| sun protein [Ammonifex degensii KC4]
 gi|260864893|gb|ACX51999.1| sun protein [Ammonifex degensii KC4]
          Length = 452

 Score =  100 bits (250), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 29/140 (20%), Positives = 58/140 (41%), Gaps = 13/140 (9%)

Query: 19  ARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMD 78
           AR  A++ LY +D+ G            Y   A T +  +      +      + +G + 
Sbjct: 4   ARELALKVLYAVDVEG-----------AYGNLALTSVMGKYRPQGPERSLLTELCYGTLR 52

Query: 79  RKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFF 138
           R   ID +++  +         +  + +ILR  V +++    +P     +E V +A  + 
Sbjct: 53  RLNTIDWVLAKFIKR--PLCEQNPWIRNILRLAVYQILYLDRIPPAAATNEAVELAKKYA 110

Query: 139 YGDEPKFINAVLDKVSRKEE 158
                 F+NAVL +V R+++
Sbjct: 111 PPSMAGFVNAVLRRVVREKD 130


>gi|313893390|ref|ZP_07826962.1| ribosomal RNA small subunit methyltransferase B [Veillonella sp.
           oral taxon 158 str. F0412]
 gi|313442031|gb|EFR60451.1| ribosomal RNA small subunit methyltransferase B [Veillonella sp.
           oral taxon 158 str. F0412]
          Length = 451

 Score =  100 bits (250), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 39/148 (26%), Positives = 66/148 (44%), Gaps = 14/148 (9%)

Query: 20  RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79
           RL AV+AL  I+  G      + EY      +D           +D  +F  +++GV+ R
Sbjct: 13  RLLAVKALSDINRNGAYANIKLQEYLQKYHLSD-----------LDRRFFTELVYGVIRR 61

Query: 80  KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139
           K ++D +I           +L  ++  ILR G+ ++I    VP    ++E V +A     
Sbjct: 62  KNYLDAIIVHFAKR--PLKKLSSMVVEILRLGIYQIIYMDKVPESAAVNESVKLAKKLTR 119

Query: 140 GDEPKFINAVLDKVSRKEEIKRSGCVSA 167
           G    F+NAVL  V R+ +    G ++ 
Sbjct: 120 GLS-GFVNAVLRSVLRECDSISIGELAK 146


>gi|315608439|ref|ZP_07883427.1| NusB family protein [Prevotella buccae ATCC 33574]
 gi|315249899|gb|EFU29900.1| NusB family protein [Prevotella buccae ATCC 33574]
          Length = 345

 Score =  100 bits (250), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 24/98 (24%), Positives = 43/98 (43%), Gaps = 1/98 (1%)

Query: 58  ESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIE 117
                  D E+ R +    +         +S   +  W FSRL  +   I++  + E++ 
Sbjct: 200 PEYKDEEDREFARKLFRATILNADQYQRYMSDA-SRNWDFSRLAYMDVVIMQIAIAEMLT 258

Query: 118 CHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSR 155
              +PV V I+EYV +A  +       +IN +LD ++R
Sbjct: 259 FPGIPVSVTINEYVNLAKVYSTPRSGGYINGMLDNIAR 296


>gi|288926808|ref|ZP_06420717.1| NusB family protein [Prevotella buccae D17]
 gi|288336437|gb|EFC74814.1| NusB family protein [Prevotella buccae D17]
          Length = 320

 Score =  100 bits (250), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 24/98 (24%), Positives = 43/98 (43%), Gaps = 1/98 (1%)

Query: 58  ESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIE 117
                  D E+ R +    +         +S   +  W FSRL  +   I++  + E++ 
Sbjct: 175 PEYKDEEDREFARKLFRATILNADQYQRYMSDA-SRNWDFSRLAYMDVVIMQIAIAEMLT 233

Query: 118 CHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSR 155
              +PV V I+EYV +A  +       +IN +LD ++R
Sbjct: 234 FPGIPVSVTINEYVNLAKVYSTPRSGGYINGMLDNIAR 271


>gi|319951926|ref|YP_004163193.1| nusb antitermination factor [Cellulophaga algicola DSM 14237]
 gi|319420586|gb|ADV47695.1| NusB antitermination factor [Cellulophaga algicola DSM 14237]
          Length = 315

 Score =  100 bits (249), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 26/106 (24%), Positives = 53/106 (50%), Gaps = 3/106 (2%)

Query: 63  HVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVP 122
             D+E+ + ++   + + + +   I    T  W   R+  I   +L+  + EL+   S+P
Sbjct: 208 QEDVEFSKRLLSKTLLQNEKLVKEIEGK-TPNWDKDRIADIDAILLKMAIAELLNFPSIP 266

Query: 123 VEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRSGCVSAI 168
             V I+EY+ +A ++       FIN +LDK+ +  E ++ G ++ I
Sbjct: 267 ERVTINEYLELAKEYSTPKSSTFINGILDKLVK--EYQQEGKLNKI 310


>gi|172036538|ref|YP_001803039.1| transcription antitermination protein NusB [Cyanothece sp. ATCC
           51142]
 gi|254772628|sp|B1WXY6|NUSB_CYAA5 RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|171697992|gb|ACB50973.1| transcription termination factor, N utilization substance protein B
           [Cyanothece sp. ATCC 51142]
          Length = 209

 Score =  100 bits (249), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 28/88 (31%), Positives = 44/88 (50%), Gaps = 2/88 (2%)

Query: 66  LEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEV 125
            E+   +I  +  R++ ID  + + L + W   RL  I   ILR  V E++    VP +V
Sbjct: 117 REYAIELIGTINRRRKEIDEQLEAVL-KDWQLKRLAKIDQDILRLAVAEILF-LDVPEKV 174

Query: 126 IISEYVCIAHDFFYGDEPKFINAVLDKV 153
            I+E V +A  +   D  +FIN VL + 
Sbjct: 175 SINEAVELAKRYSDDDGYRFINGVLRRF 202


>gi|332705392|ref|ZP_08425470.1| transcription antitermination factor NusB [Lyngbya majuscula 3L]
 gi|332355752|gb|EGJ35214.1| transcription antitermination factor NusB [Lyngbya majuscula 3L]
          Length = 209

 Score =  100 bits (249), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 27/87 (31%), Positives = 41/87 (47%), Gaps = 2/87 (2%)

Query: 66  LEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEV 125
             +   II  V  R+  ID +++  L + W   RL  I   ILR  V E+     +P  V
Sbjct: 113 RSYTLEIIKAVSRRQLEIDQMLNQSL-KDWQLKRLPRIDRDILRMAVAEIAF-LGIPDRV 170

Query: 126 IISEYVCIAHDFFYGDEPKFINAVLDK 152
            I+E V +A  +   +  +FIN VL +
Sbjct: 171 AINEAVELAKRYSDEEGHRFINGVLRR 197


>gi|187734931|ref|YP_001877043.1| NusB antitermination factor [Akkermansia muciniphila ATCC BAA-835]
 gi|187424983|gb|ACD04262.1| NusB antitermination factor [Akkermansia muciniphila ATCC BAA-835]
          Length = 294

 Score =  100 bits (249), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 30/104 (28%), Positives = 52/104 (50%), Gaps = 6/104 (5%)

Query: 52  DTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAG 111
           +   D E +Y        + +   ++ R+  +D  I S L E +S  R+  I  +ILR G
Sbjct: 192 EAGRDAEELYREA-----KTLGEDILRRRDGLDAAIDSTL-ENYSPERVSAIDRAILRLG 245

Query: 112 VLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSR 155
             EL+    +P  ++ISE + ++  F   + P+FIN VL  +S+
Sbjct: 246 AYELLHRKDLPAPIVISEAIRLSERFSSAESPRFINGVLAGISK 289


>gi|326801392|ref|YP_004319211.1| NusB antitermination factor [Sphingobacterium sp. 21]
 gi|326552156|gb|ADZ80541.1| NusB antitermination factor [Sphingobacterium sp. 21]
          Length = 315

 Score = 99.8 bits (248), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 28/103 (27%), Positives = 51/103 (49%), Gaps = 3/103 (2%)

Query: 65  DLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVE 124
           D E+   +        +   + IS   T+ W   R+ +I   ++R  + EL+   S+PV+
Sbjct: 209 DKEFIVDLFRLTTRHGEDYQIYISGK-TKNWEADRIALIDTLLMRMAITELLNFSSIPVK 267

Query: 125 VIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRSGCVSA 167
           V I+EY+ I+ +F       FIN +LDK+    E+++ G +  
Sbjct: 268 VTINEYIEISKEFSTPKSNSFINGILDKIL--IELQKEGKIRK 308


>gi|312129526|ref|YP_003996866.1| nusb antitermination factor [Leadbetterella byssophila DSM 17132]
 gi|311906072|gb|ADQ16513.1| NusB antitermination factor [Leadbetterella byssophila DSM 17132]
          Length = 371

 Score = 99.8 bits (248), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 29/136 (21%), Positives = 57/136 (41%), Gaps = 8/136 (5%)

Query: 38  TEIISEYETYRFCADTELDVESVYLHVD-----LEWFRVIIHGVMDRKQHIDLLISSCLT 92
            EI+     + F    E +V  +    D      ++ R +      + + +   I   L 
Sbjct: 231 KEILRTMLFHSFANFVEDEVVVIEKLDDQWEDTKDFLRTLFKETAVKDEELLEHILPHL- 289

Query: 93  EKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDK 152
           + W   R+      +L+  V EL    S+PV+V I+E + IA ++       FIN +LD 
Sbjct: 290 KNWDLERIIGTDLILLKMAVAELTTFPSIPVKVTINEIIEIAKNYSSEKSKVFINGLLDS 349

Query: 153 VSRKEEIKRSGCVSAI 168
           + +  ++++ G +   
Sbjct: 350 ICK--DLQQKGLIKKT 363


>gi|300726454|ref|ZP_07059900.1| NusB family protein [Prevotella bryantii B14]
 gi|299776182|gb|EFI72746.1| NusB family protein [Prevotella bryantii B14]
          Length = 320

 Score = 99.8 bits (248), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 31/125 (24%), Positives = 55/125 (44%), Gaps = 3/125 (2%)

Query: 31  DIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSC 90
           +I+     + I  +E     AD EL  E      DL++ R +    +         +S  
Sbjct: 150 EIVDTFVIKTIKRFEQANK-ADQELLPE-YKDEEDLDFARKLFRSTILNADQYQRYMSDA 207

Query: 91  LTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVL 150
            +  W FSRL  +   I++  + EL    ++P  V I+EYV +A  +       ++N +L
Sbjct: 208 -SRNWDFSRLAYMDVVIMQIAIAELCTFPNIPASVTINEYVNLAKLYSTPHSGSYVNGML 266

Query: 151 DKVSR 155
           D ++R
Sbjct: 267 DGIAR 271


>gi|303232029|ref|ZP_07318732.1| ribosomal RNA small subunit methyltransferase B [Veillonella
           atypica ACS-049-V-Sch6]
 gi|302513135|gb|EFL55174.1| ribosomal RNA small subunit methyltransferase B [Veillonella
           atypica ACS-049-V-Sch6]
          Length = 452

 Score = 99.8 bits (248), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 36/139 (25%), Positives = 66/139 (47%), Gaps = 14/139 (10%)

Query: 20  RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79
           RL AV+AL  I+  G     ++ +Y +    +D           +D  +F  +++GV+ R
Sbjct: 14  RLLAVKALSDINRKGAYANIVLQDYISKYNLSD-----------LDRRFFTELVYGVVRR 62

Query: 80  KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139
           + ++D +I           +L  ++  ILR GV ++I    VP    ++E V +A     
Sbjct: 63  RNYLDAIIVHFAKR--PIKKLSSMVVEILRLGVYQIIYMDKVPESAAVNESVKLAKKLTR 120

Query: 140 GDEPKFINAVLDKVSRKEE 158
           G    F+NA+L  V R+++
Sbjct: 121 GLS-GFVNAILRSVIREQD 138


>gi|227540276|ref|ZP_03970325.1| N utilization substance protein [Sphingobacterium spiritivorum ATCC
           33300]
 gi|227239812|gb|EEI89827.1| N utilization substance protein [Sphingobacterium spiritivorum ATCC
           33300]
          Length = 300

 Score = 99.8 bits (248), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 26/103 (25%), Positives = 52/103 (50%), Gaps = 3/103 (2%)

Query: 65  DLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVE 124
           D E+   ++   +   +    LI++  T+ W   R+ ++   ++R  + ELI   S+PV+
Sbjct: 194 DREFVLDLLANTIRYGEEYQSLIAAK-TKNWEADRIALLDTILMRMAICELINFSSIPVK 252

Query: 125 VIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRSGCVSA 167
           V I+EY+ ++  F       FIN +LDK+    ++ + G +  
Sbjct: 253 VTINEYIELSKVFSTLKSNTFINGILDKIL--ADLNQQGRIRK 293


>gi|75906501|ref|YP_320797.1| transcription antitermination protein NusB [Anabaena variabilis
           ATCC 29413]
 gi|119372276|sp|Q3MGI4|NUSB_ANAVT RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|75700226|gb|ABA19902.1| NusB antitermination factor [Anabaena variabilis ATCC 29413]
          Length = 211

 Score = 99.4 bits (247), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 31/115 (26%), Positives = 54/115 (46%), Gaps = 5/115 (4%)

Query: 48  RFCADTELDVESVYLHVDLE---WFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMIL 104
           +  A  E        + D E   +   ++  + + +  ID  I+S L   W  +RL  I 
Sbjct: 96  QLGASVEFPELIQLANQDKEVGRYAIKLVKIINEERGMIDEQITSALV-DWQVTRLAQID 154

Query: 105 CSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEI 159
             ILR  V E++   ++P  V I+E V +A  +   +  +FIN VL +VS +++ 
Sbjct: 155 RDILRIAVAEMMF-LNLPNSVAINEAVELAKRYSGDEGHRFINGVLRRVSDQKKA 208


>gi|167762592|ref|ZP_02434719.1| hypothetical protein BACSTE_00948 [Bacteroides stercoris ATCC
           43183]
 gi|167699698|gb|EDS16277.1| hypothetical protein BACSTE_00948 [Bacteroides stercoris ATCC
           43183]
          Length = 308

 Score = 99.4 bits (247), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 32/147 (21%), Positives = 62/147 (42%), Gaps = 10/147 (6%)

Query: 25  QALYQI----DIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRK 80
           Q+LY      +I+     + I  ++        +  +       D E+ R +    +   
Sbjct: 167 QSLY-WNDDKEIVDTFVLKTIKRFDEKNGA--NQPLLPEFKDDEDQEFARRLFRRAILNC 223

Query: 81  QHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYG 140
            +   LIS   T  W   R+  +   I++  + E++   ++PV V ++EYV IA  +   
Sbjct: 224 DYYRHLISEN-TRNWDLDRVAFMDVVIMQCALAEILSFPNIPVSVSLNEYVDIAKVYSTA 282

Query: 141 DEPKFINAVLDKVSRKEEIKRSGCVSA 167
               F+N  LD + +  E+K+ G +S 
Sbjct: 283 KSGSFVNGTLDGIVK--ELKKEGKLSK 307


>gi|300771100|ref|ZP_07080976.1| NusB family protein [Sphingobacterium spiritivorum ATCC 33861]
 gi|300761770|gb|EFK58590.1| NusB family protein [Sphingobacterium spiritivorum ATCC 33861]
          Length = 304

 Score = 99.4 bits (247), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 26/103 (25%), Positives = 52/103 (50%), Gaps = 3/103 (2%)

Query: 65  DLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVE 124
           D E+   ++   +   +    LI++  T+ W   R+ ++   ++R  + ELI   S+PV+
Sbjct: 198 DREFVLDLLANTIRYGEEYQSLIAAK-TKNWEADRIALLDTILMRMAICELINFSSIPVK 256

Query: 125 VIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRSGCVSA 167
           V I+EY+ ++  F       FIN +LDK+    ++ + G +  
Sbjct: 257 VTINEYIELSKVFSTLKSNTFINGILDKIL--ADLNQQGRIRK 297


>gi|323705503|ref|ZP_08117078.1| sun protein [Thermoanaerobacterium xylanolyticum LX-11]
 gi|323535405|gb|EGB25181.1| sun protein [Thermoanaerobacterium xylanolyticum LX-11]
          Length = 447

 Score = 99.4 bits (247), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 36/137 (26%), Positives = 63/137 (45%), Gaps = 13/137 (9%)

Query: 20  RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79
           R  A + LY I I    +  ++++Y       D           +D  + + I+ G ++R
Sbjct: 4   RNTAFKILYDIIIKKGYSNIVLNKYLNNNELRD-----------IDKSFIKEIVFGTIER 52

Query: 80  KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139
           KQ +D +I  C ++     ++D  +  IL  G+ ++I    VP    ISE V +A ++  
Sbjct: 53  KQTLDQIIDHCSSKG--SKKIDNKILIILEMGLYQIIYMDKVPQYAAISEAVNLAKEYAG 110

Query: 140 GDEPKFINAVLDKVSRK 156
               KF+NAVL   +R 
Sbjct: 111 IHASKFVNAVLRNYARN 127


>gi|255534372|ref|YP_003094743.1| Transcription termination protein NusB [Flavobacteriaceae bacterium
           3519-10]
 gi|255340568|gb|ACU06681.1| Transcription termination protein NusB [Flavobacteriaceae bacterium
           3519-10]
          Length = 301

 Score = 99.4 bits (247), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 24/94 (25%), Positives = 43/94 (45%), Gaps = 1/94 (1%)

Query: 63  HVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVP 122
             D E+ R ++   ++  +  +  +   L E W   R+ ++   IL   + EL      P
Sbjct: 205 EDDREFARRLLKDTLNHWEESEKKLVGRL-ENWDIERVSLVDKIILVTAITELDYFPLTP 263

Query: 123 VEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRK 156
             V+I+EY+ I+  F       FIN +LDK ++ 
Sbjct: 264 ARVVINEYIEISKVFSTDRSNIFINGILDKYTKD 297


>gi|88802775|ref|ZP_01118302.1| putative N utilization substance protein [Polaribacter irgensii
           23-P]
 gi|88781633|gb|EAR12811.1| putative N utilization substance protein [Polaribacter irgensii
           23-P]
          Length = 312

 Score = 99.4 bits (247), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 23/94 (24%), Positives = 47/94 (50%), Gaps = 1/94 (1%)

Query: 63  HVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVP 122
             D E+   +    + ++   + +I+   T  W   R+  I   +++  + E +   S+P
Sbjct: 205 KDDEEFVSKLFRKTVLKQADYEPMIAEK-TPNWESDRIAGIDMILIKMAIAEFLNFSSIP 263

Query: 123 VEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRK 156
            +V I+EY+ I+ D+       FIN VLDK++++
Sbjct: 264 TKVTINEYIEISKDYSTSRSSFFINGVLDKIAKE 297


>gi|163787968|ref|ZP_02182414.1| putative N utilization substance protein [Flavobacteriales
           bacterium ALC-1]
 gi|159876288|gb|EDP70346.1| putative N utilization substance protein [Flavobacteriales
           bacterium ALC-1]
          Length = 303

 Score = 99.4 bits (247), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 26/98 (26%), Positives = 45/98 (45%), Gaps = 1/98 (1%)

Query: 63  HVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVP 122
             DL + + +    +         IS+  T  W   RL  +   +L+  + E  +  S+P
Sbjct: 196 EDDLVYAKDLFKKTLLNGSKFSEEISAK-TTNWDSERLASLDGVLLKMALCEFQKFSSIP 254

Query: 123 VEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIK 160
            +V I+EY+ IA  +       FIN +LDKV ++ + K
Sbjct: 255 YKVTINEYLEIAKAYSTPKSSLFINGILDKVVKEYQSK 292


>gi|51892487|ref|YP_075178.1| hypothetical protein STH1349 [Symbiobacterium thermophilum IAM
           14863]
 gi|51856176|dbj|BAD40334.1| conserved hypothetical protein [Symbiobacterium thermophilum IAM
           14863]
          Length = 459

 Score = 99.0 bits (246), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 27/140 (19%), Positives = 53/140 (37%), Gaps = 13/140 (9%)

Query: 17  GIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGV 76
              R AA++ALY +DI        +  + +       E                 + +GV
Sbjct: 10  RTGREAALRALYDVDIKAAYANLALDHHLSRSQLDGRE-----------RALATELAYGV 58

Query: 77  MDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHD 136
             R+  +D  I           ++D  + +ILR    +++    +P    + + V +A  
Sbjct: 59  TRRRATLDWAIGQVAAR--PLEKMDPWVRNILREAAYQILYMDRIPPAAAVDQAVELARQ 116

Query: 137 FFYGDEPKFINAVLDKVSRK 156
           + +    KF+N VL  + R+
Sbjct: 117 YGHEGVAKFVNGVLRNLIRR 136


>gi|149279327|ref|ZP_01885458.1| putative N utilization substance protein [Pedobacter sp. BAL39]
 gi|149229853|gb|EDM35241.1| putative N utilization substance protein [Pedobacter sp. BAL39]
          Length = 297

 Score = 99.0 bits (246), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 27/138 (19%), Positives = 63/138 (45%), Gaps = 4/138 (2%)

Query: 31  DIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSC 90
           +++     + +  +       +  L   S     D ++   +    + + +    LI+  
Sbjct: 157 EVMQGMVAKTLKNFVNEDPFKNK-LTPISQDWEEDRKFVEDLFAYTLRKDKEYQELIADR 215

Query: 91  LTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVL 150
            T+ W   R+ ++   +++  + EL+   S+PV+V I+EY+ ++ D+       FIN +L
Sbjct: 216 -TKNWESERIALMDTILMKMAICELMNFPSIPVKVTINEYLDLSKDYSTPKSNSFINGIL 274

Query: 151 DKVSRKEEIKRSGCVSAI 168
           DK+    ++KR+  +  I
Sbjct: 275 DKIL--GDLKRTDSIHKI 290


>gi|329961415|ref|ZP_08299538.1| transcription antitermination factor NusB [Bacteroides fluxus YIT
           12057]
 gi|328531892|gb|EGF58715.1| transcription antitermination factor NusB [Bacteroides fluxus YIT
           12057]
          Length = 308

 Score = 99.0 bits (246), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 35/147 (23%), Positives = 65/147 (44%), Gaps = 10/147 (6%)

Query: 25  QALYQI----DIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRK 80
           Q+LY      +I+     + I  +E  +  A+ EL  E      D E+ R +    +   
Sbjct: 167 QSLY-WNDDKEIVDTFVLKTIKRFEEKK-GANQELLPE-FKDDEDQEFARRLFRRTILNC 223

Query: 81  QHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYG 140
            +   LIS   T  W   R+  +   I++  + E++   ++PV V ++EYV IA  +   
Sbjct: 224 DYYRHLISEN-TRNWDLDRVAFMDVVIMQCALAEILSFPNIPVSVSLNEYVDIAKVYSTV 282

Query: 141 DEPKFINAVLDKVSRKEEIKRSGCVSA 167
               F+N  LD +    ++K+ G ++ 
Sbjct: 283 KSGSFVNGTLDGIV--NQLKKEGKLTK 307


>gi|225011815|ref|ZP_03702253.1| transcription antitermination factor NusB [Flavobacteria bacterium
           MS024-2A]
 gi|225004318|gb|EEG42290.1| transcription antitermination factor NusB [Flavobacteria bacterium
           MS024-2A]
          Length = 314

 Score = 99.0 bits (246), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 24/99 (24%), Positives = 46/99 (46%), Gaps = 7/99 (7%)

Query: 63  HVDLEWFRVIIHGVMDRKQHIDLLISSCL---TEKWSFSRLDMILCSILRAGVLELIECH 119
             D ++   ++  V+      D  +   L   T  W   R+  +   IL+  + EL+   
Sbjct: 207 KEDTDFGIQLLEKVIAN----DSKLQEELLGKTPNWDAERIAQLDNVILKVAIAELLYFP 262

Query: 120 SVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEE 158
            +P +V ++EY+ IA D+       F+N VLDK+ ++ +
Sbjct: 263 MIPSKVTLNEYLEIAKDYSTPKSNNFVNGVLDKLVKEFD 301


>gi|160892144|ref|ZP_02073147.1| hypothetical protein BACUNI_04607 [Bacteroides uniformis ATCC 8492]
 gi|270296236|ref|ZP_06202436.1| conserved hypothetical protein [Bacteroides sp. D20]
 gi|317480857|ref|ZP_07939938.1| transcription antitermination factor NusB [Bacteroides sp. 4_1_36]
 gi|156858622|gb|EDO52053.1| hypothetical protein BACUNI_04607 [Bacteroides uniformis ATCC 8492]
 gi|270273640|gb|EFA19502.1| conserved hypothetical protein [Bacteroides sp. D20]
 gi|316902942|gb|EFV24815.1| transcription antitermination factor NusB [Bacteroides sp. 4_1_36]
          Length = 308

 Score = 99.0 bits (246), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 35/147 (23%), Positives = 64/147 (43%), Gaps = 10/147 (6%)

Query: 25  QALYQI----DIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRK 80
           Q+LY      +I+     + I  +E     A+ EL  E      D E+ R +    +   
Sbjct: 167 QSLY-WNDDKEIVDTFVLKTIKRFEEKN-GANQELLPE-FKDEEDQEFARRLFRRAILNC 223

Query: 81  QHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYG 140
            +   LIS   T  W   R+  +   I++  + E++   ++PV V ++EYV IA  +   
Sbjct: 224 DYYRHLISEN-TRNWDLDRVAFMDVVIMQCALAEILSFPNIPVSVSLNEYVDIAKVYSTA 282

Query: 141 DEPKFINAVLDKVSRKEEIKRSGCVSA 167
               F+N  LD +    ++K+ G ++ 
Sbjct: 283 KSGSFVNGTLDGIV--NQLKKEGKLTK 307


>gi|189467494|ref|ZP_03016279.1| hypothetical protein BACINT_03883 [Bacteroides intestinalis DSM
           17393]
 gi|189435758|gb|EDV04743.1| hypothetical protein BACINT_03883 [Bacteroides intestinalis DSM
           17393]
          Length = 308

 Score = 99.0 bits (246), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 33/147 (22%), Positives = 61/147 (41%), Gaps = 10/147 (6%)

Query: 25  QALYQI----DIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRK 80
           Q+LY      +I+     + I  +E       T L         D E+ R +    +   
Sbjct: 167 QSLY-WNDDKEIVDTFVLKTIKRFEEKNGANQTLLP--EFKDEEDQEFARRLFRRAILNC 223

Query: 81  QHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYG 140
            +   LIS   T  W   R+  +   I++  + E++   ++PV V ++EYV IA  +   
Sbjct: 224 DYYRHLISEN-TRNWDLDRVAFMDVIIMQCALAEILSFPNIPVSVSLNEYVEIAKVYSTI 282

Query: 141 DEPKFINAVLDKVSRKEEIKRSGCVSA 167
               F+N  LD +    ++K+ G ++ 
Sbjct: 283 KSGSFVNGTLDGIV--NQLKKEGKLAK 307


>gi|110638835|ref|YP_679044.1| antitermination factor [Cytophaga hutchinsonii ATCC 33406]
 gi|110281516|gb|ABG59702.1| antitermination factor [Cytophaga hutchinsonii ATCC 33406]
          Length = 389

 Score = 99.0 bits (246), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 26/115 (22%), Positives = 53/115 (46%), Gaps = 3/115 (2%)

Query: 53  TELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGV 112
            EL   S     D E+   +           + LI+    + W   RL      IL+  +
Sbjct: 269 YELPSLSPNWEDDQEFMLELYKESTAFDDAAEKLITDK-VQNWDIERLAFTDRIILKMAL 327

Query: 113 LELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRSGCVSA 167
            E+++  ++PV+V I+EY+ ++  +      +F+N +LD +S   ++++SG +  
Sbjct: 328 TEMVKFPNIPVKVTINEYIELSKSYSTPKSKQFVNGLLDTIS--IDLQKSGLIQK 380


>gi|325285045|ref|YP_004260835.1| NusB antitermination factor [Cellulophaga lytica DSM 7489]
 gi|324320499|gb|ADY27964.1| NusB antitermination factor [Cellulophaga lytica DSM 7489]
          Length = 315

 Score = 99.0 bits (246), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 28/112 (25%), Positives = 50/112 (44%), Gaps = 3/112 (2%)

Query: 57  VESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELI 116
            E +    D+ + + ++   +         I    T  W   R+  I   +L+  + EL+
Sbjct: 202 PELLKEDDDMVYAKQLLTKTLLNDAEYVKEIVGK-TPNWDKDRIADIDGILLKMAICELL 260

Query: 117 ECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRSGCVSAI 168
              S+P +V I+E++ IA ++       FIN +LDK+ R  E K  G +  I
Sbjct: 261 NFPSIPEKVTINEFLEIAKEYSTPKSSIFINGILDKLVR--EYKSEGKLKKI 310


>gi|253572755|ref|ZP_04850155.1| conserved hypothetical protein [Bacteroides sp. 1_1_6]
 gi|298384353|ref|ZP_06993913.1| NusB family protein [Bacteroides sp. 1_1_14]
 gi|251837655|gb|EES65746.1| conserved hypothetical protein [Bacteroides sp. 1_1_6]
 gi|298262632|gb|EFI05496.1| NusB family protein [Bacteroides sp. 1_1_14]
          Length = 308

 Score = 99.0 bits (246), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 35/147 (23%), Positives = 65/147 (44%), Gaps = 10/147 (6%)

Query: 25  QALYQI----DIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRK 80
           Q+LY      +I+     + I  +E     A+ EL  E      D E+ R +    +   
Sbjct: 167 QSLY-WNDDKEIVDTFVLKTIKRFEEKN-GANQELLPE-FKDDEDQEFARRLFRRTILNA 223

Query: 81  QHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYG 140
            +   L+S   T+ W   R+  +   I++  + E++   ++PV V ++EYV IA  +   
Sbjct: 224 DYYRHLVSEN-TKNWDLDRIAFMDIIIMQTALAEILSFPNIPVSVSLNEYVEIAKLYSTA 282

Query: 141 DEPKFINAVLDKVSRKEEIKRSGCVSA 167
               FIN  LD +    ++K+ G ++ 
Sbjct: 283 KSGSFINGTLDGIV--NQLKKEGKLTK 307


>gi|281420711|ref|ZP_06251710.1| NusB family protein [Prevotella copri DSM 18205]
 gi|281405484|gb|EFB36164.1| NusB family protein [Prevotella copri DSM 18205]
          Length = 355

 Score = 99.0 bits (246), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 28/128 (21%), Positives = 51/128 (39%), Gaps = 7/128 (5%)

Query: 35  CSTTEIISEYE---TYRFCADTELDVE---SVYLHVDLEWFRVIIHGVMDRKQHIDLLIS 88
               +II  +      RF  + +   E         D E+ R +    +         +S
Sbjct: 178 NDDKDIIDTFVLKTIKRFDPEAKAKQELLPEYKDAEDREFARKLFRATILNCDTYQRYMS 237

Query: 89  SCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINA 148
             L   W FSRL  +   I++  + E++    +P  V I+EYV +A  +       ++N 
Sbjct: 238 EAL-RNWDFSRLAYMDVIIMQIAIAEVMNFPGIPATVTINEYVELAKAYSTPRSGGYVNG 296

Query: 149 VLDKVSRK 156
           +LD + R+
Sbjct: 297 MLDSICRE 304


>gi|300868307|ref|ZP_07112935.1| N utilization substance protein B homolog [Oscillatoria sp. PCC
           6506]
 gi|300333687|emb|CBN58119.1| N utilization substance protein B homolog [Oscillatoria sp. PCC
           6506]
          Length = 210

 Score = 99.0 bits (246), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 27/95 (28%), Positives = 46/95 (48%), Gaps = 2/95 (2%)

Query: 68  WFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVII 127
           +   I+  V   +  ID L+S+ L   W   RL  I   I+R  V E++    +P +V I
Sbjct: 116 YALKILGTVSANRPAIDELLSAALV-DWQIDRLPRIDRDIMRIAVAEIMF-LDLPEQVGI 173

Query: 128 SEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRS 162
           +E + +A  +   +  +FIN VL +   K + + S
Sbjct: 174 NEAIELAKRYSGDEGYRFINGVLRRAVEKIKPESS 208


>gi|330836447|ref|YP_004411088.1| NusB antitermination factor [Spirochaeta coccoides DSM 17374]
 gi|329748350|gb|AEC01706.1| NusB antitermination factor [Spirochaeta coccoides DSM 17374]
          Length = 138

 Score = 99.0 bits (246), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 26/108 (24%), Positives = 52/108 (48%), Gaps = 1/108 (0%)

Query: 55  LDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLE 114
            + +  +    + + R ++ G ++    ID +I++    + +F R+D+I  +ILR  V  
Sbjct: 10  QEEQDEFEPEVVLFARYLVAGTLENIDGIDDVIAAYSVRR-AFDRIDVIDRNILRISVFS 68

Query: 115 LIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRS 162
           L         VII E V ++ +F      +FIN +LD + ++    R+
Sbjct: 69  LFFSEDTHPHVIIDEAVKLSQEFSSEVNYRFINGLLDALMQELSAYRT 116


>gi|255531305|ref|YP_003091677.1| NusB/RsmB/TIM44 [Pedobacter heparinus DSM 2366]
 gi|255344289|gb|ACU03615.1| NusB/RsmB/TIM44 [Pedobacter heparinus DSM 2366]
          Length = 316

 Score = 99.0 bits (246), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 26/138 (18%), Positives = 63/138 (45%), Gaps = 4/138 (2%)

Query: 31  DIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSC 90
           +++     + I  + +     +    +   +   D ++   +    +   +    LI+  
Sbjct: 176 EVMQGMVAKTIKNFTSEDPFKNKLTPISQDWAE-DSKFVEDLFVHTLKSDKEYQGLIAER 234

Query: 91  LTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVL 150
            T+ W   R+ ++   +++  + EL+   S+PV+V I+EY+ ++ D+       FIN +L
Sbjct: 235 -TKNWESERIALMDTILMKMAICELMNFPSIPVKVTINEYLDLSKDYSTPKSNSFINGIL 293

Query: 151 DKVSRKEEIKRSGCVSAI 168
           DK+    ++KR+  +  I
Sbjct: 294 DKIL--GDLKRTNSIHKI 309


>gi|218129920|ref|ZP_03458724.1| hypothetical protein BACEGG_01503 [Bacteroides eggerthii DSM 20697]
 gi|317476859|ref|ZP_07936102.1| transcription antitermination factor NusB [Bacteroides eggerthii
           1_2_48FAA]
 gi|217988030|gb|EEC54355.1| hypothetical protein BACEGG_01503 [Bacteroides eggerthii DSM 20697]
 gi|316907034|gb|EFV28745.1| transcription antitermination factor NusB [Bacteroides eggerthii
           1_2_48FAA]
          Length = 308

 Score = 98.6 bits (245), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 31/147 (21%), Positives = 62/147 (42%), Gaps = 10/147 (6%)

Query: 25  QALYQI----DIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRK 80
           Q+LY      +I+     + I  ++        +  +       D ++ R +    +   
Sbjct: 167 QSLY-WNDDKEIVDTFVLKTIKRFDEKNGA--NQPLLPEFKDEEDRDFARRLFRRSILNC 223

Query: 81  QHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYG 140
            +   LIS   T  W   R+  +   I++  + E++   ++PV V ++EYV IA  +   
Sbjct: 224 DYYRHLISEN-TRNWDLDRVAFMDVVIMQCALAEILSFPNIPVSVSLNEYVDIAKVYSTT 282

Query: 141 DEPKFINAVLDKVSRKEEIKRSGCVSA 167
               F+N  LD + +  E+K+ G +S 
Sbjct: 283 KSGSFVNGTLDGIVK--ELKKEGKLSK 307


>gi|229495644|ref|ZP_04389373.1| NusB family protein [Porphyromonas endodontalis ATCC 35406]
 gi|229317414|gb|EEN83318.1| NusB family protein [Porphyromonas endodontalis ATCC 35406]
          Length = 348

 Score = 98.6 bits (245), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 24/133 (18%), Positives = 54/133 (40%), Gaps = 7/133 (5%)

Query: 35  CSTTEIISEY------ETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLIS 88
            S  EI  E+      +     +  E+ + +     D      ++   +  ++    +I+
Sbjct: 212 SSPVEIEKEFALKSMRKAKPDTSFDEVIIPAYKDEEDTHLAAELLRTTIVHEEEYREIIN 271

Query: 89  SCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINA 148
             L   W   R+  +   IL+  + EL+   ++P  V ++EY+ +A  +   +   F+N 
Sbjct: 272 KNL-RNWDMDRVTDVDMIILQMALAELLSFPTIPTTVTLNEYIELAKIYSTAESGVFVNG 330

Query: 149 VLDKVSRKEEIKR 161
           +LD    +   +R
Sbjct: 331 LLDSALHQLRNER 343


>gi|260591412|ref|ZP_05856870.1| NusB family protein [Prevotella veroralis F0319]
 gi|260536604|gb|EEX19221.1| NusB family protein [Prevotella veroralis F0319]
          Length = 357

 Score = 98.6 bits (245), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 28/127 (22%), Positives = 52/127 (40%), Gaps = 7/127 (5%)

Query: 35  CSTTEIISEYETY---RFCADTELDVE---SVYLHVDLEWFRVIIHGVMDRKQHIDLLIS 88
               EI+  +      RF  + + D E         D E+   +    +         +S
Sbjct: 171 NDDKEIVDTFVIKTIKRFDPENKADQELLPEYRDEEDREFAVKLFRSTILNADEYQRYMS 230

Query: 89  SCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINA 148
              +  W FSRL  +   I++  + E++   ++P  V I+EYV +A  +       +IN 
Sbjct: 231 ES-SRNWDFSRLAYMDVVIMQIAIAEMMTFPNIPATVTINEYVDLAKLYSTPRSGGYING 289

Query: 149 VLDKVSR 155
           +LD ++R
Sbjct: 290 MLDTIAR 296


>gi|86609546|ref|YP_478308.1| transcription antitermination protein NusB [Synechococcus sp.
           JA-2-3B'a(2-13)]
 gi|119390840|sp|Q2JHC7|NUSB_SYNJB RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|86558088|gb|ABD03045.1| transcription antitermination factor NusB [Synechococcus sp.
           JA-2-3B'a(2-13)]
          Length = 291

 Score = 98.6 bits (245), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 33/138 (23%), Positives = 53/138 (38%), Gaps = 9/138 (6%)

Query: 25  QALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLH--------VDLEWFRVIIHGV 76
           QAL  ++    S   I+ E       A   + V                  +   ++  +
Sbjct: 134 QALEHLEQRLHSVRHILDEVVQLSQRAVNRVGVALSMPELLYIAQSQEVRAYALQLLTAL 193

Query: 77  MDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHD 136
              K+ ID  +   L   W   R+  I   ILR  V+E+    S PV+V I+E V +A  
Sbjct: 194 RTHKEAIDARLQKALV-GWQLQRVGRIERDILRLAVVEMEILASSPVKVAINEAVELAKK 252

Query: 137 FFYGDEPKFINAVLDKVS 154
           +   +   F+N VL +V 
Sbjct: 253 YGDPEAAAFVNGVLRRVV 270


>gi|224538936|ref|ZP_03679475.1| hypothetical protein BACCELL_03833 [Bacteroides cellulosilyticus
           DSM 14838]
 gi|224519454|gb|EEF88559.1| hypothetical protein BACCELL_03833 [Bacteroides cellulosilyticus
           DSM 14838]
          Length = 308

 Score = 98.6 bits (245), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 33/147 (22%), Positives = 61/147 (41%), Gaps = 10/147 (6%)

Query: 25  QALYQI----DIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRK 80
           Q+LY      +I+     + I  +E       T L         D E+ R +    +   
Sbjct: 167 QSLY-WNDDKEIVDTFVLKTIKRFEAKNGANQTLLP--EFKDEEDQEFARRLFRRAILNC 223

Query: 81  QHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYG 140
            +   LIS   T  W   R+  +   I++  + E++   ++PV V ++EYV IA  +   
Sbjct: 224 DYYRHLISEN-TRNWDLDRVAFMDVIIMQCALAEILSFPNIPVSVSLNEYVEIAKVYSTI 282

Query: 141 DEPKFINAVLDKVSRKEEIKRSGCVSA 167
               F+N  LD +    ++K+ G ++ 
Sbjct: 283 KSGSFVNGTLDGIV--NQLKKEGKLAK 307


>gi|289549038|ref|YP_003474026.1| NusB antitermination factor [Thermocrinis albus DSM 14484]
 gi|289182655|gb|ADC89899.1| NusB antitermination factor [Thermocrinis albus DSM 14484]
          Length = 138

 Score = 98.6 bits (245), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 30/140 (21%), Positives = 56/140 (40%), Gaps = 11/140 (7%)

Query: 18  IARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVM 77
            AR  A   LYQ ++ G     +  EY   +    +E             + R ++   M
Sbjct: 6   KAREDAFLILYQWEMKGEDPFALAEEYIRMKNIKYSERR----------RYVRKMVRTFM 55

Query: 78  DRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDF 137
           +  + +D ++   + E W   RL  +  +ILR  + EL+       +  I +YV +   +
Sbjct: 56  ENWKEVDKILGQ-MVEDWDLDRLGYVERNILRVALTELMFLKVKNPKQAIFDYVKLTLKY 114

Query: 138 FYGDEPKFINAVLDKVSRKE 157
                 +F+N VL +  R +
Sbjct: 115 AGKTPARFVNGVLGRFLRDK 134


>gi|282879732|ref|ZP_06288462.1| transcription antitermination factor NusB [Prevotella timonensis
           CRIS 5C-B1]
 gi|281306401|gb|EFA98431.1| transcription antitermination factor NusB [Prevotella timonensis
           CRIS 5C-B1]
          Length = 334

 Score = 98.6 bits (245), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 25/125 (20%), Positives = 52/125 (41%), Gaps = 3/125 (2%)

Query: 31  DIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSC 90
           +++     + I  ++         L         D E+ R +    +         +S  
Sbjct: 175 EVVDTFVLKTIKRFDAANKSEQELLP--EYRDEEDREFARKLFRATILNADTYQRYMSET 232

Query: 91  LTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVL 150
            +  W FSRL  +   I++  + E++   ++P+ V I+EYV +A  +       +IN +L
Sbjct: 233 -SHNWDFSRLAYMDVVIMQIAIAEMLTFPNIPISVTINEYVNLAKLYSTPKSGGYINGML 291

Query: 151 DKVSR 155
           D ++R
Sbjct: 292 DAIAR 296


>gi|150024632|ref|YP_001295458.1| N utilization substance protein B [Flavobacterium psychrophilum
           JIP02/86]
 gi|149771173|emb|CAL42640.1| N utilization substance protein B homolog (NusBprotein)
           [Flavobacterium psychrophilum JIP02/86]
          Length = 303

 Score = 98.6 bits (245), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 28/122 (22%), Positives = 53/122 (43%), Gaps = 2/122 (1%)

Query: 40  IISEYETYRFCADTELDVESVYLHV-DLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFS 98
           I+ +    +   +    V  +Y    D E+   +   V    Q +    +   T  W   
Sbjct: 172 ILKQLNAIKNTENGNFYVPKLYKDTEDKEFVGNLFRKVALNDQQLAKEFADK-TPNWEAD 230

Query: 99  RLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEE 158
           R+  I   IL+  + E ++  S+PV+V I+EY+ +A ++       FIN +LD + ++ E
Sbjct: 231 RIAEIDTIILKMAICEFLKFPSIPVKVTINEYLELAKEYSTPKSSIFINGILDNLVKEFE 290

Query: 159 IK 160
             
Sbjct: 291 SN 292


>gi|29349999|ref|NP_813502.1| putative nitrogen utilization substance protein [Bacteroides
           thetaiotaomicron VPI-5482]
 gi|29341910|gb|AAO79696.1| putative nitrogen utilization substance protein [Bacteroides
           thetaiotaomicron VPI-5482]
          Length = 260

 Score = 98.6 bits (245), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 35/147 (23%), Positives = 65/147 (44%), Gaps = 10/147 (6%)

Query: 25  QALYQI----DIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRK 80
           Q+LY      +I+     + I  +E     A+ EL  E      D E+ R +    +   
Sbjct: 119 QSLY-WNDDKEIVDTFVLKTIKRFEEKN-GANQELLPE-FKDDEDQEFARRLFRRTILNA 175

Query: 81  QHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYG 140
            +   L+S   T+ W   R+  +   I++  + E++   ++PV V ++EYV IA  +   
Sbjct: 176 DYYRHLVSEN-TKNWDLDRIAFMDIIIMQTALAEILSFPNIPVSVSLNEYVEIAKLYSTA 234

Query: 141 DEPKFINAVLDKVSRKEEIKRSGCVSA 167
               FIN  LD +    ++K+ G ++ 
Sbjct: 235 KSGSFINGTLDGIV--NQLKKEGKLTK 259


>gi|262340975|ref|YP_003283830.1| transcription antitermination factor NusB [Blattabacterium sp.
           (Blattella germanica) str. Bge]
 gi|262272312|gb|ACY40220.1| transcription antitermination factor NusB [Blattabacterium sp.
           (Blattella germanica) str. Bge]
          Length = 300

 Score = 98.6 bits (245), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 19/100 (19%), Positives = 47/100 (47%), Gaps = 1/100 (1%)

Query: 63  HVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVP 122
           + + ++   +    +  K+  + LI+  ++  W+  R+ ++   IL+  + E +   ++P
Sbjct: 193 NENKKFVIDLYRNTIFHKEEFNSLIND-ISNNWNIKRIAILDLIILQMAICEFLYFPNIP 251

Query: 123 VEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRS 162
            +  ++EY+ I   F       FIN +LD++ +    K  
Sbjct: 252 PKATMNEYIEITKIFCMEKSKIFINGILDQIFKFLHKKNK 291


>gi|293400615|ref|ZP_06644760.1| transcription antitermination factor NusB [Erysipelotrichaceae
           bacterium 5_2_54FAA]
 gi|291305641|gb|EFE46885.1| transcription antitermination factor NusB [Erysipelotrichaceae
           bacterium 5_2_54FAA]
          Length = 126

 Score = 98.6 bits (245), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 33/142 (23%), Positives = 59/142 (41%), Gaps = 16/142 (11%)

Query: 12  LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71
           ++  R   R  A+  LYQ  ++     E + E          E+D     + +D      
Sbjct: 1   MAVSRHELREKAMTCLYQHFLLNKDIKETVFENNDSN-----EIDPFLYTVTID------ 49

Query: 72  IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
                +  ++    +I+  L E W+F RL  +  +IL     EL +    P  ++I+E V
Sbjct: 50  ----AIKYEEDYIQMINEALREDWTFERLGYVEKAILIMAACEL-DMEIAPKPIVINEAV 104

Query: 132 CIAHDFFYGDEPKFINAVLDKV 153
            +A  +   +  K IN VLD++
Sbjct: 105 TLAKKYCDEETYKLINGVLDRL 126


>gi|254414272|ref|ZP_05028039.1| transcription antitermination factor NusB, putative [Microcoleus
           chthonoplastes PCC 7420]
 gi|196178947|gb|EDX73944.1| transcription antitermination factor NusB, putative [Microcoleus
           chthonoplastes PCC 7420]
          Length = 213

 Score = 98.6 bits (245), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 24/88 (27%), Positives = 42/88 (47%), Gaps = 2/88 (2%)

Query: 66  LEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEV 125
             +   I+  +  R+  ID ++   L + W  +RL  I   ILR  V E+     +P  V
Sbjct: 113 RAYAIEILQAIRRRQVEIDEILVKSL-KDWQINRLPRIDRDILRIAVAEMAF-LGIPDRV 170

Query: 126 IISEYVCIAHDFFYGDEPKFINAVLDKV 153
            I+E + +A  +   +  +F+N VL +V
Sbjct: 171 AINEAIELAKRYSDQEGHRFVNGVLRRV 198


>gi|160915119|ref|ZP_02077332.1| hypothetical protein EUBDOL_01127 [Eubacterium dolichum DSM 3991]
 gi|158432918|gb|EDP11207.1| hypothetical protein EUBDOL_01127 [Eubacterium dolichum DSM 3991]
          Length = 126

 Score = 98.3 bits (244), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 35/142 (24%), Positives = 60/142 (42%), Gaps = 16/142 (11%)

Query: 12  LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71
           ++  R   R  A+ +LYQ  ++     E + E          E+D     + +D   ++ 
Sbjct: 1   MTLSRHKLREIAMTSLYQHFLLSKDIKECVYEN-----TQSNEIDPFLYTITIDAIRYKD 55

Query: 72  IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
              G      HID      L + W+F RL  +  +IL     EL +  + P  ++I E V
Sbjct: 56  TYVG------HIDET----LRDDWTFERLGYVEKAILLMAACEL-DFETAPKAIVIDEAV 104

Query: 132 CIAHDFFYGDEPKFINAVLDKV 153
            +A  +   D  + IN VLD++
Sbjct: 105 NLAKKYCDEDTYRLINGVLDRL 126


>gi|299140507|ref|ZP_07033645.1| NusB family protein [Prevotella oris C735]
 gi|298577473|gb|EFI49341.1| NusB family protein [Prevotella oris C735]
          Length = 321

 Score = 98.3 bits (244), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 23/124 (18%), Positives = 50/124 (40%), Gaps = 3/124 (2%)

Query: 31  DIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSC 90
           +++     + I  +E         L         D ++ R +    +         +S  
Sbjct: 175 EVVDTFVLKTIKRFEQENKSMQELLP--EYKDEEDKDFARKLFRATILNADQYQRYMSEA 232

Query: 91  LTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVL 150
            +  W F RL  +   I++  + E++   ++P+ V I+EYV +A  +       +IN +L
Sbjct: 233 -SRNWDFGRLAYMDVVIMQIAIAEMLTFPNIPISVTINEYVDLAKLYSTPKSGGYINGML 291

Query: 151 DKVS 154
           D ++
Sbjct: 292 DSIA 295


>gi|312891647|ref|ZP_07751157.1| NusB antitermination factor [Mucilaginibacter paludis DSM 18603]
 gi|311295831|gb|EFQ72990.1| NusB antitermination factor [Mucilaginibacter paludis DSM 18603]
          Length = 315

 Score = 98.3 bits (244), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 32/148 (21%), Positives = 64/148 (43%), Gaps = 17/148 (11%)

Query: 23  AVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHV--DLEWFRVIIHGVMDRK 80
            +QAL            I   ++ + F    +  +  V ++   D E+   +    +   
Sbjct: 177 VLQAL------------IAKTFKNFSFEEAEKNKLAEVVVNWVDDREYIVSLFQHTIRYD 224

Query: 81  QHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYG 140
           +     I++  T+ W   R+ M+   +++  + E +   S+PV+V I+EY+ I+ +F   
Sbjct: 225 EMFQEWITAK-TQNWEPERIAMMDTLLMKMAIAEFVYFPSIPVKVTINEYLEISKEFSTP 283

Query: 141 DEPKFINAVLDKVSRKEEIKRSGCVSAI 168
               FIN +LDK+    E+K  G +   
Sbjct: 284 KSNSFINGILDKIL--FELKAEGKIKKT 309


>gi|303238065|ref|ZP_07324606.1| transcription antitermination factor NusB [Prevotella disiens
           FB035-09AN]
 gi|302481761|gb|EFL44815.1| transcription antitermination factor NusB [Prevotella disiens
           FB035-09AN]
          Length = 355

 Score = 98.3 bits (244), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 28/125 (22%), Positives = 55/125 (44%), Gaps = 3/125 (2%)

Query: 31  DIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSC 90
           +I+     + I  ++     A+ EL  E      D ++   +    +         +S  
Sbjct: 175 EIVDTFVVKTIKRFDPANK-ANQELLPE-FKDEEDKDFAIKLFRSTILNADTYQRYMSET 232

Query: 91  LTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVL 150
            +  W FSRL  +   I++  + E++   ++PV V I+EYV +A  +       +IN +L
Sbjct: 233 -SRNWDFSRLAYMDIVIMQIAIAEMLNFPNIPVSVSINEYVELAKLYSTPRSGSYINGML 291

Query: 151 DKVSR 155
           D ++R
Sbjct: 292 DAIAR 296


>gi|281423250|ref|ZP_06254163.1| NusB family protein [Prevotella oris F0302]
 gi|281402586|gb|EFB33417.1| NusB family protein [Prevotella oris F0302]
          Length = 319

 Score = 98.3 bits (244), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 23/124 (18%), Positives = 50/124 (40%), Gaps = 3/124 (2%)

Query: 31  DIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSC 90
           +++     + I  +E         L         D ++ R +    +         +S  
Sbjct: 175 EVVDTFVLKTIKRFEQENTSMQELLPEYKD--EEDKDFARKLFRATILNADQYQRYMSEA 232

Query: 91  LTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVL 150
            +  W F RL  +   I++  + E++   ++P+ V I+EYV +A  +       +IN +L
Sbjct: 233 -SRNWDFGRLAYMDVVIMQIAIAEMLTFPNIPISVTINEYVDLAKLYSTQKSGGYINGML 291

Query: 151 DKVS 154
           D ++
Sbjct: 292 DSIA 295


>gi|298209147|ref|YP_003717326.1| putative N utilization substance protein [Croceibacter atlanticus
           HTCC2559]
 gi|83849074|gb|EAP86943.1| putative N utilization substance protein [Croceibacter atlanticus
           HTCC2559]
          Length = 302

 Score = 98.3 bits (244), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 26/104 (25%), Positives = 51/104 (49%), Gaps = 3/104 (2%)

Query: 65  DLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVE 124
           D ++   ++   +         IS   T  W   R+  +   +++  + E ++  S+PV+
Sbjct: 197 DRDFAVELMQKTILNDVEYTSEISKK-TPNWDKERIAELDAVLMKMAICEFVKFPSIPVK 255

Query: 125 VIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRSGCVSAI 168
           V I+EY+ IA ++       FIN +LDK+S+  E K  G ++ +
Sbjct: 256 VTINEYLEIAKEYSTPKSSIFINGILDKISK--EFKADGKLNKM 297


>gi|213963621|ref|ZP_03391873.1| antitermination protein NusB [Capnocytophaga sputigena Capno]
 gi|213953749|gb|EEB65079.1| antitermination protein NusB [Capnocytophaga sputigena Capno]
          Length = 302

 Score = 98.3 bits (244), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 28/123 (22%), Positives = 56/123 (45%), Gaps = 2/123 (1%)

Query: 40  IISEYETYRFCADTELDVESVYLH-VDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFS 98
           I+ E++  R     +    S+Y +  + E+   ++         +   +   LT  W   
Sbjct: 171 IVREFKNLRPNPPEKYFTPSLYNNSEEKEFLVDLLKKTALNDAKLKSFVEDKLT-NWDKE 229

Query: 99  RLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEE 158
           R+ ++   IL+  + E +   S+PV+V I+EY+ +A ++       FIN VL+ V ++  
Sbjct: 230 RVAVLDLIILKMAICEFLHFPSIPVKVTINEYLELAKEYSTAKSSLFINGVLNVVHKELS 289

Query: 159 IKR 161
            K 
Sbjct: 290 EKE 292


>gi|116514375|ref|YP_813281.1| transcription termination factor [Lactobacillus delbrueckii subsp.
           bulgaricus ATCC BAA-365]
 gi|116093690|gb|ABJ58843.1| Transcription termination factor [Lactobacillus delbrueckii subsp.
           bulgaricus ATCC BAA-365]
          Length = 122

 Score = 98.3 bits (244), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 26/133 (19%), Positives = 54/133 (40%), Gaps = 11/133 (8%)

Query: 24  VQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHI 83
           +QA+Y   +     +   SE E     A        + L     + + ++ GV+D++  +
Sbjct: 1   MQAIY---LYNQDPSLTASELENNVKSA--------LDLDTLPAYSQELVSGVIDKQAEL 49

Query: 84  DLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEP 143
              +S+ L + W   RL     +IL   + E++    +     I+E + +  +F      
Sbjct: 50  RDKLSANLKQGWRLERLSKTSLAILEVALYEMLYSPVIEDRSAINEALNLCDEFDDPKSK 109

Query: 144 KFINAVLDKVSRK 156
            FIN +L    ++
Sbjct: 110 AFINGILANFVQE 122


>gi|305664845|ref|YP_003861132.1| putative N utilization substance protein [Maribacter sp. HTCC2170]
 gi|88707967|gb|EAR00206.1| putative N utilization substance protein [Maribacter sp. HTCC2170]
          Length = 304

 Score = 98.3 bits (244), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 25/106 (23%), Positives = 51/106 (48%), Gaps = 3/106 (2%)

Query: 63  HVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVP 122
           + D+++ + ++   +      +  I    T  W   R+  I   +L+  + EL+   S+P
Sbjct: 197 NEDMDFAQKLLTKTLLNNSKWEKEIEGK-TPNWDKDRIADIDAILLKMAICELLNFPSIP 255

Query: 123 VEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRSGCVSAI 168
            +V I+E++ IA ++       FIN +LDK+ +  E K  G +  +
Sbjct: 256 EKVTINEFLEIAKEYSTPKSSIFINGILDKLVK--EYKTEGKLKKV 299


>gi|325680657|ref|ZP_08160195.1| transcription antitermination factor NusB [Ruminococcus albus 8]
 gi|324107437|gb|EGC01715.1| transcription antitermination factor NusB [Ruminococcus albus 8]
          Length = 137

 Score = 98.3 bits (244), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 32/145 (22%), Positives = 64/145 (44%), Gaps = 13/145 (8%)

Query: 14  HRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVII 73
             R   R AA            S  ++  + E        E   E + L+ D+   + ++
Sbjct: 2   ASRHDIRQAAFLL---------SFEKLFLDEELESLFEGAEELGEFLLLNDDV---KDLV 49

Query: 74  HGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCI 133
             V D+++ +D +IS   ++K + +R+  +  ++LR  + E +    VPV V ISE V +
Sbjct: 50  RCVFDKQEELDSIISKY-SDKRALNRIPKVDLAVLRIAIYEALYDDKVPVNVAISEAVSL 108

Query: 134 AHDFFYGDEPKFINAVLDKVSRKEE 158
              +    +  F+N +L   S++ +
Sbjct: 109 TEKYALEPDVSFVNGLLGAFSKELK 133


>gi|257068637|ref|YP_003154892.1| transcription antitermination factor NusB [Brachybacterium faecium
           DSM 4810]
 gi|256559455|gb|ACU85302.1| transcription antitermination factor NusB [Brachybacterium faecium
           DSM 4810]
          Length = 178

 Score = 97.9 bits (243), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 32/140 (22%), Positives = 56/140 (40%), Gaps = 13/140 (9%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           R   R+ A+  L++ D       +++ E    R  A T L           +W R ++  
Sbjct: 44  RSRERIRAIDVLFEADAKRIDVLDVLQERLR-RTAAQTPLP----------QWSRTLVEL 92

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVE-VIISEYVCIA 134
                  ID  +++  +  W   R+  +  +ILR G  E++          II EY  IA
Sbjct: 93  YAPHAVDIDEDLATH-SRDWPLHRMPAVDRAILRLGAAEVLYGEEESRRGTIIGEYTKIA 151

Query: 135 HDFFYGDEPKFINAVLDKVS 154
                 D P+F+N +L ++ 
Sbjct: 152 EVLSTDDSPRFVNGLLQRLV 171


>gi|332520936|ref|ZP_08397396.1| transcription antitermination factor NusB [Lacinutrix algicola
           5H-3-7-4]
 gi|332043466|gb|EGI79662.1| transcription antitermination factor NusB [Lacinutrix algicola
           5H-3-7-4]
          Length = 303

 Score = 97.9 bits (243), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 26/104 (25%), Positives = 52/104 (50%), Gaps = 3/104 (2%)

Query: 65  DLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVE 124
           D E+   +    +  +  +   I+S  T  W   R+  I   +L+ G+ E+ +  S+P +
Sbjct: 198 DKEFAIKLFKKTLLNQSILSKEIASK-TTNWDADRIANIDYLLLKMGICEIKDFPSIPTK 256

Query: 125 VIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRSGCVSAI 168
           V I+EY+ I+ ++       FIN +LDK+ +  E +  G ++ +
Sbjct: 257 VTINEYLEISKEYSTPKSKVFINGILDKLVK--EYENEGKLNKV 298


>gi|317056629|ref|YP_004105096.1| NusB antitermination factor [Ruminococcus albus 7]
 gi|315448898|gb|ADU22462.1| NusB antitermination factor [Ruminococcus albus 7]
          Length = 137

 Score = 97.9 bits (243), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 33/141 (23%), Positives = 63/141 (44%), Gaps = 13/141 (9%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           R   R AA    ++   +      I        F +  EL     ++ VD E  + ++ G
Sbjct: 4   RREVRQAAFLLSFEKLFMDDELENI--------FNSAQEL---GEFISVDDE-VKALVRG 51

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
           + +++  +D +IS   ++K + SR+  +  S+LR  + E +    VPV V ISE V +  
Sbjct: 52  IFEKQDELDSIISKY-SDKRAVSRIPKVDLSVLRLAIYEALYDDKVPVNVAISEAVSLTE 110

Query: 136 DFFYGDEPKFINAVLDKVSRK 156
            +    +  F+N +L   ++ 
Sbjct: 111 KYALEPDIAFVNGLLGSFAKD 131


>gi|297621030|ref|YP_003709167.1| nusB putative transcription antitermination factor, NusB family
           [Waddlia chondrophila WSU 86-1044]
 gi|297376331|gb|ADI38161.1| nusB putative transcription antitermination factor, NusB family
           [Waddlia chondrophila WSU 86-1044]
          Length = 145

 Score = 97.9 bits (243), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 32/137 (23%), Positives = 61/137 (44%), Gaps = 12/137 (8%)

Query: 20  RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79
           R    Q LY  D       E    + +       ++ +E+            +I G   R
Sbjct: 12  REIVFQLLYGHD-WHSPEKEAFHTFLSKEAKISKKVILEAQERV-------DLIRG---R 60

Query: 80  KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139
           ++ +D LI     + ++F R+  +  +ILR G+ EL+    +P +V I+E + +   F  
Sbjct: 61  EKELDQLIGES-AKSYAFDRIPRVERNILRLGIYELLFDEQIPPKVAIAEAIRLGRKFST 119

Query: 140 GDEPKFINAVLDKVSRK 156
            +   FINA++D++ +K
Sbjct: 120 PESATFINAIMDELYQK 136


>gi|332879944|ref|ZP_08447629.1| putative transcription antitermination factor NusB [Capnocytophaga
           sp. oral taxon 329 str. F0087]
 gi|332682155|gb|EGJ55067.1| putative transcription antitermination factor NusB [Capnocytophaga
           sp. oral taxon 329 str. F0087]
          Length = 313

 Score = 97.9 bits (243), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 26/123 (21%), Positives = 56/123 (45%), Gaps = 2/123 (1%)

Query: 40  IISEYETYRFCADTELDVESVYLHVDLEWF-RVIIHGVMDRKQHIDLLISSCLTEKWSFS 98
           I+  ++  R     +    ++Y   D + F   +    +     +   I   LT  W   
Sbjct: 182 IVKLFKNLRPNPPEKYFTPTLYNTDDEKLFLSDLFKKTVLNDNKLKNFIDDKLT-NWDKE 240

Query: 99  RLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEE 158
           R+ ++   +L+  V EL+   S+P++V I+EY+ ++ ++       FIN +L+ + ++ E
Sbjct: 241 RVAVLDNILLKMAVCELLYFPSIPIKVTINEYLELSKEYSTPKSSLFINGILNVIHKELE 300

Query: 159 IKR 161
            K 
Sbjct: 301 EKE 303


>gi|304382450|ref|ZP_07364948.1| NusB family protein [Prevotella marshii DSM 16973]
 gi|304336403|gb|EFM02641.1| NusB family protein [Prevotella marshii DSM 16973]
          Length = 329

 Score = 97.9 bits (243), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 24/125 (19%), Positives = 50/125 (40%), Gaps = 3/125 (2%)

Query: 31  DIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSC 90
           +I+     + I  ++         L         D  +   +    +         +S  
Sbjct: 175 EIVDTFVLKTIKRFDPQNTTKQELLP--EYKDPEDKAFACKLFRATILNADQYQHYMSET 232

Query: 91  LTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVL 150
            +  W FSRL  +   I++  + E++   ++P+ V I+EYV +A  +       +IN +L
Sbjct: 233 -SRNWDFSRLAYMDVVIMQIAIAEMLTFPNIPISVTINEYVELAKLYSTPKSGAYINGML 291

Query: 151 DKVSR 155
           D ++R
Sbjct: 292 DTIAR 296


>gi|150390542|ref|YP_001320591.1| sun protein [Alkaliphilus metalliredigens QYMF]
 gi|149950404|gb|ABR48932.1| sun protein [Alkaliphilus metalliredigens QYMF]
          Length = 444

 Score = 97.9 bits (243), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 37/144 (25%), Positives = 64/144 (44%), Gaps = 14/144 (9%)

Query: 18  IARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVM 77
            AR +A++ LY            I+E E Y   A  +      +  VD  +   +++GV+
Sbjct: 2   KARESALKVLY-----------AITEQEAYSNIALNQQFRAETHTPVDKAFVTELVYGVV 50

Query: 78  DRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDF 137
           +    ID +I    T K +   ++    S+LR  + ++     VPV   ++E V ++  +
Sbjct: 51  ENLIWIDYVIDQFSTTK-TIK-MNPWTLSLLRLAIYQIFFLDRVPVFAAVNESVDLSKKY 108

Query: 138 FYGDEPKFINAVLDKVSRKEEIKR 161
                  FIN VL  + RK+EI R
Sbjct: 109 C-KHTTAFINGVLRNILRKKEIIR 131


>gi|86143181|ref|ZP_01061583.1| putative N utilization substance protein [Leeuwenhoekiella
           blandensis MED217]
 gi|85830086|gb|EAQ48546.1| putative N utilization substance protein [Leeuwenhoekiella
           blandensis MED217]
          Length = 304

 Score = 97.9 bits (243), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 19/94 (20%), Positives = 45/94 (47%), Gaps = 1/94 (1%)

Query: 63  HVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVP 122
             D ++ + ++       +  +  I    T  W   R+  +   +++  + E +   S+P
Sbjct: 196 EEDRQFAKDLLLRTARNDEEYEAEILGN-TPNWDQDRIAALDKILIKMALCEFLRFSSIP 254

Query: 123 VEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRK 156
           V+V I+EY+ ++ ++       F+N VLD++ +K
Sbjct: 255 VKVTINEYLELSKEYSTPKSSIFVNGVLDRLVKK 288


>gi|288803706|ref|ZP_06409135.1| NusB family protein [Prevotella melaninogenica D18]
 gi|288333795|gb|EFC72241.1| NusB family protein [Prevotella melaninogenica D18]
          Length = 297

 Score = 97.5 bits (242), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 28/125 (22%), Positives = 55/125 (44%), Gaps = 3/125 (2%)

Query: 31  DIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSC 90
           +++     + I  ++     AD EL  E      D ++   +    +         +S  
Sbjct: 114 EVVDTFVIKTIKRFDPAN-GADQELLPE-YRDEEDRDFALKLFRSTILNADDYQRYMSES 171

Query: 91  LTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVL 150
            +  W FSRL  +   I++  + E++   ++PV V I+EYV +A  +       +IN +L
Sbjct: 172 -SRNWDFSRLAYMDVVIMQIAIAEMLTFPNIPVTVTINEYVDLAKLYSTPRSGGYINGML 230

Query: 151 DKVSR 155
           D ++R
Sbjct: 231 DTIAR 235


>gi|282858295|ref|ZP_06267480.1| transcription antitermination factor NusB [Prevotella bivia
           JCVIHMP010]
 gi|282588926|gb|EFB94046.1| transcription antitermination factor NusB [Prevotella bivia
           JCVIHMP010]
          Length = 337

 Score = 97.5 bits (242), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 27/125 (21%), Positives = 57/125 (45%), Gaps = 3/125 (2%)

Query: 31  DIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSC 90
           +++     + I  ++     AD EL  E   +  D ++   +    +   +     +S  
Sbjct: 175 EVVDTFVVKTIKRFDPAN-GADQELLPEFKDI-ADRQFAIDLFRSTIMNAETYQQYMSEA 232

Query: 91  LTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVL 150
            +  W FSRL  +   I++  + E++   ++P+ V I+EYV +A  +       +IN +L
Sbjct: 233 -SHNWDFSRLAYMDVVIMQIAIAEIVNFPNIPISVSINEYVNLAKLYSTPRSGGYINGML 291

Query: 151 DKVSR 155
           D ++R
Sbjct: 292 DSIAR 296


>gi|315038645|ref|YP_004032213.1| transcriptional termination factor [Lactobacillus amylovorus GRL
           1112]
 gi|325957127|ref|YP_004292539.1| transcription termination factor [Lactobacillus acidophilus 30SC]
 gi|312276778|gb|ADQ59418.1| transcriptional termination factor [Lactobacillus amylovorus GRL
           1112]
 gi|325333692|gb|ADZ07600.1| transcription termination factor [Lactobacillus acidophilus 30SC]
          Length = 130

 Score = 97.5 bits (242), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 26/138 (18%), Positives = 54/138 (39%), Gaps = 11/138 (7%)

Query: 17  GIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGV 76
             +R  A+QA+Y   +          E E     A        + L     + + +I GV
Sbjct: 4   HESRKVAMQAIY---LANQEPDLNAEEVEAKVVTA--------LNLKQLSAYSKKLIEGV 52

Query: 77  MDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHD 136
           ++ +  +   +S  L + W   R+  I+ +I+   + E+     +  +  ++E + +  +
Sbjct: 53  LENRADLQSALSEHLKKGWRLERVSQIVVAIMEVALFEIKNSDEIDPKAAVNEALNLCDE 112

Query: 137 FFYGDEPKFINAVLDKVS 154
           F    E  FIN +L    
Sbjct: 113 FAEPKEKPFINGMLANFV 130


>gi|323344945|ref|ZP_08085169.1| NusB family protein [Prevotella oralis ATCC 33269]
 gi|323094215|gb|EFZ36792.1| NusB family protein [Prevotella oralis ATCC 33269]
          Length = 329

 Score = 97.5 bits (242), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 25/125 (20%), Positives = 51/125 (40%), Gaps = 3/125 (2%)

Query: 31  DIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSC 90
           +I+     + I  ++         L         D ++   +    +         +S  
Sbjct: 175 EIVDTFVLKTIKRFDPKNKSKQELLPEYKDM--EDKDFACKLFRATILNADQYQHYMSET 232

Query: 91  LTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVL 150
            +  W FSRL  +   I++  + E++   ++PV V I+EYV +A  +       +IN +L
Sbjct: 233 -SRNWDFSRLAYMDVVIMQIAIAEMLTFPNIPVSVTINEYVDLAKLYSTPKSGGYINGML 291

Query: 151 DKVSR 155
           D ++R
Sbjct: 292 DSIAR 296


>gi|194336038|ref|YP_002017832.1| sun protein [Pelodictyon phaeoclathratiforme BU-1]
 gi|194308515|gb|ACF43215.1| sun protein [Pelodictyon phaeoclathratiforme BU-1]
          Length = 445

 Score = 97.5 bits (242), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 28/140 (20%), Positives = 58/140 (41%), Gaps = 13/140 (9%)

Query: 17  GIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGV 76
             AR  A+Q L  ++     +  ++     +           S     D      +++GV
Sbjct: 2   TTARELALQVLQSLETGKQQSDTLLHRSLHH-----------STLNRADRALSTGLVNGV 50

Query: 77  MDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHD 136
           +  +  +D +I+     K    +   I+ +ILR GV +++  + VP    ++E V +A  
Sbjct: 51  LRYRLQLDFVIAQFYHHK--LEKAAPIMKNILRLGVYQILFLNKVPDWAAVNECVKLARK 108

Query: 137 FFYGDEPKFINAVLDKVSRK 156
           +      K +N VL K++ +
Sbjct: 109 YKGERMSKLVNGVLRKITPE 128


>gi|167860643|gb|ACA05102.1| putative N utilization substance protein [Flammeovirga yaeyamensis]
          Length = 200

 Score = 97.5 bits (242), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 28/129 (21%), Positives = 65/129 (50%), Gaps = 5/129 (3%)

Query: 40  IISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSR 99
           ++   +     + TE+   S     D E+F  +    +++++    +I+   ++KW+  R
Sbjct: 67  VLKTVKNISTDSGTEILSISKNWDEDKEFFEDLYKYTLEQEESFKEIIAKK-SKKWAIDR 125

Query: 100 LDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEE- 158
           +  +   ++   + E++   ++PV+V I+E++ I+  +      +FIN +LD +S + E 
Sbjct: 126 IAKVDSILINMALAEMLNFRNIPVKVTINEFIEISKQYSTPKSWQFINGMLDSISEELEA 185

Query: 159 ---IKRSGC 164
              IK+SG 
Sbjct: 186 EGKIKKSGK 194


>gi|60680691|ref|YP_210835.1| putative N utilization substance protein [Bacteroides fragilis NCTC
           9343]
 gi|60492125|emb|CAH06888.1| putative N utilization substance protein [Bacteroides fragilis NCTC
           9343]
 gi|301162218|emb|CBW21763.1| putative N utilization substance protein [Bacteroides fragilis
           638R]
          Length = 294

 Score = 97.5 bits (242), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 32/147 (21%), Positives = 63/147 (42%), Gaps = 10/147 (6%)

Query: 25  QALYQI----DIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRK 80
           Q+LY      +I+     + I  +E  +     +  +       D E+ R +    +   
Sbjct: 153 QSLY-WNDDKEIVDTFVLKTIKRFEEKQGA--NQPLLPEFKDDEDQEFARRLFRRAILNA 209

Query: 81  QHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYG 140
            +   LIS   T+ W   R+  +   I++  + E++   ++PV V ++EYV IA  +   
Sbjct: 210 DYYRHLISEN-TKNWDLDRVAFMDVIIMQCALAEILSFPNIPVSVSLNEYVEIAKLYSTV 268

Query: 141 DEPKFINAVLDKVSRKEEIKRSGCVSA 167
               FIN  LD +    ++K+ G ++ 
Sbjct: 269 KSGSFINGTLDGIV--NQLKKEGKLTK 293


>gi|330752415|emb|CBL87366.1| thioredoxin family protein [uncultured Flavobacteria bacterium]
          Length = 307

 Score = 97.5 bits (242), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 28/125 (22%), Positives = 56/125 (44%), Gaps = 2/125 (1%)

Query: 37  TTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWS 96
              II+      F  D++ + +      D+ +   +    ++ ++ I+  +S   T  W 
Sbjct: 177 VNSIITNNINKLFKNDSKSN-KFFKKDDDVSFMISLFKQTINNEEFIENQLSGK-TPNWD 234

Query: 97  FSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRK 156
             R+  +   IL+  + EL+   ++PV+  I+EY+ IA ++       FIN VLD   + 
Sbjct: 235 KERIAGLDYVILKMAISELLYFPTIPVKATINEYLEIAKEYATPKSAIFINGVLDNSLKD 294

Query: 157 EEIKR 161
              K+
Sbjct: 295 FSSKK 299


>gi|326336653|ref|ZP_08202821.1| NusB family protein [Capnocytophaga sp. oral taxon 338 str. F0234]
 gi|325691123|gb|EGD33094.1| NusB family protein [Capnocytophaga sp. oral taxon 338 str. F0234]
          Length = 310

 Score = 97.5 bits (242), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 31/132 (23%), Positives = 58/132 (43%), Gaps = 9/132 (6%)

Query: 40  IISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEK---WS 96
           I+   +      +  L         D E+ + ++   +      D L    L EK   W 
Sbjct: 180 IVKLLKGLSQGKEANLLPPLFKDESDKEFGKELLRKTILN----DELFHQYLVEKTPQWD 235

Query: 97  FSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRK 156
             R+  I   +++ G+ E ++  S+PV+V ++EYV IA ++       FIN +LD +S+ 
Sbjct: 236 TERIAEIDAILIKMGITEFLKFPSIPVKVTLNEYVEIAKEYSTPKSSVFINGILDTLSK- 294

Query: 157 EEIKRSGCVSAI 168
            +  + G +  I
Sbjct: 295 -DFIQEGKLKKI 305


>gi|303228540|ref|ZP_07315368.1| ribosomal RNA small subunit methyltransferase B [Veillonella
           atypica ACS-134-V-Col7a]
 gi|302516787|gb|EFL58701.1| ribosomal RNA small subunit methyltransferase B [Veillonella
           atypica ACS-134-V-Col7a]
          Length = 452

 Score = 97.5 bits (242), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 36/139 (25%), Positives = 66/139 (47%), Gaps = 14/139 (10%)

Query: 20  RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79
           RL AV+AL  I+  G     ++ +Y      +D           +D  +F  +++GV+ R
Sbjct: 14  RLLAVKALSDINRKGAYANIVLQDYILKYNLSD-----------LDRRFFTELVYGVVRR 62

Query: 80  KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139
           + ++D++I           +L  ++  ILR GV ++I    VP    ++E V +A     
Sbjct: 63  RNYLDVIIVHF--ANRPIKKLSSMVVEILRLGVYQIIYMDKVPESAAVNESVKLAKKLTR 120

Query: 140 GDEPKFINAVLDKVSRKEE 158
           G    F+NA+L  V R+++
Sbjct: 121 GLS-GFVNAILRSVIREQD 138


>gi|82621723|gb|ABB86539.1| NusB [uncultured Bacteroidetes bacterium 'SBI2-18 P41A3']
          Length = 325

 Score = 97.5 bits (242), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 27/96 (28%), Positives = 51/96 (53%), Gaps = 1/96 (1%)

Query: 63  HVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVP 122
             D E+   +I  V++ K+ +   IS  +T  W   R+  I   +L+  + E +   S+P
Sbjct: 206 DEDAEFGIELIKYVIENKEMLQDEISK-VTPNWDNERIAQIDLILLQMCLSEFLFFKSIP 264

Query: 123 VEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEE 158
           ++V I+EY+ IA ++       FIN ++D +S++ E
Sbjct: 265 LKVSINEYLEIAKEYSSDKSNIFINGIMDSLSKQFE 300


>gi|84496669|ref|ZP_00995523.1| NusB antitermination factor [Janibacter sp. HTCC2649]
 gi|84383437|gb|EAP99318.1| NusB antitermination factor [Janibacter sp. HTCC2649]
          Length = 136

 Score = 97.5 bits (242), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 36/139 (25%), Positives = 66/139 (47%), Gaps = 13/139 (9%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           R  +R  A+  L++ +    + TE++ E                V      E+   ++ G
Sbjct: 4   RTKSRRRAIDLLFEAEQRQVNATELLKERLA-----------TPVTEAPLNEFTANLVTG 52

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
           V+D    I+ L+++  ++ WS  R+  +  +ILR G  E++    VP  V I+E V IA 
Sbjct: 53  VVDNWSQINDLLATY-SQGWSVERMPAVDRAILRVGAFEVLFG-EVPEGVAIAEAVAIAT 110

Query: 136 DFFYGDEPKFINAVLDKVS 154
           +    D PKF+N +L +++
Sbjct: 111 ELSTDDSPKFVNGLLARLA 129


>gi|125973090|ref|YP_001037000.1| sun protein [Clostridium thermocellum ATCC 27405]
 gi|256004593|ref|ZP_05429571.1| sun protein [Clostridium thermocellum DSM 2360]
 gi|281417285|ref|ZP_06248305.1| sun protein [Clostridium thermocellum JW20]
 gi|125713315|gb|ABN51807.1| sun protein [Clostridium thermocellum ATCC 27405]
 gi|255991465|gb|EEU01569.1| sun protein [Clostridium thermocellum DSM 2360]
 gi|281408687|gb|EFB38945.1| sun protein [Clostridium thermocellum JW20]
 gi|316940689|gb|ADU74723.1| sun protein [Clostridium thermocellum DSM 1313]
          Length = 455

 Score = 97.5 bits (242), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 32/149 (21%), Positives = 64/149 (42%), Gaps = 13/149 (8%)

Query: 10  LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF 69
           + +  +    R  A++ LY            I+E   Y   +  +      +  +D  + 
Sbjct: 1   MDMRTKVDKVRETALKILY-----------DINEKGAYSNISLNKYLNGQEFESIDRAFI 49

Query: 70  RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISE 129
             I++G +  +  ID LI    + K    ++   + +ILR G+ +LI    +P     +E
Sbjct: 50  TDIVYGTLKWQYTIDYLIEKFSSVK--IKKISPWIFNILRMGIYQLIYTDKIPFFAACNE 107

Query: 130 YVCIAHDFFYGDEPKFINAVLDKVSRKEE 158
            V +A  + +    K++NAVL  ++R +E
Sbjct: 108 SVKLAAKYGHAASSKYVNAVLRNIARNKE 136


>gi|237713467|ref|ZP_04543948.1| conserved hypothetical protein [Bacteroides sp. D1]
 gi|262407253|ref|ZP_06083801.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
 gi|294644674|ref|ZP_06722424.1| transcription antitermination factor NusB [Bacteroides ovatus SD CC
           2a]
 gi|294809065|ref|ZP_06767787.1| transcription antitermination factor NusB [Bacteroides
           xylanisolvens SD CC 1b]
 gi|298482673|ref|ZP_07000857.1| NusB family protein [Bacteroides sp. D22]
 gi|229446449|gb|EEO52240.1| conserved hypothetical protein [Bacteroides sp. D1]
 gi|262354061|gb|EEZ03153.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
 gi|292640008|gb|EFF58276.1| transcription antitermination factor NusB [Bacteroides ovatus SD CC
           2a]
 gi|294443790|gb|EFG12535.1| transcription antitermination factor NusB [Bacteroides
           xylanisolvens SD CC 1b]
 gi|295087143|emb|CBK68666.1| transcription antitermination factor NusB [Bacteroides
           xylanisolvens XB1A]
 gi|298271136|gb|EFI12713.1| NusB family protein [Bacteroides sp. D22]
          Length = 308

 Score = 97.1 bits (241), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 34/147 (23%), Positives = 66/147 (44%), Gaps = 10/147 (6%)

Query: 25  QALYQI----DIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRK 80
           Q+LY      +I+     + I  ++  +  A+ EL  E      D E+ R +    +   
Sbjct: 167 QSLY-WNDDKEIVDTFVLKTIKRFDEKK-GANQELLPE-FKDDEDQEFARRLFRRTILNS 223

Query: 81  QHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYG 140
            +   L+S   T+ W   R+  +   I++  + E++   ++PV V ++EYV IA  +   
Sbjct: 224 DYYRHLVSEN-TKNWDLDRIAFMDVIIMQTALAEILSFPNIPVSVSLNEYVEIAKLYSTA 282

Query: 141 DEPKFINAVLDKVSRKEEIKRSGCVSA 167
               FIN  LD +    ++K+ G ++ 
Sbjct: 283 KSGSFINGTLDGIV--NQLKKEGKLTK 307


>gi|293370796|ref|ZP_06617342.1| transcription antitermination factor NusB [Bacteroides ovatus SD
           CMC 3f]
 gi|292634156|gb|EFF52699.1| transcription antitermination factor NusB [Bacteroides ovatus SD
           CMC 3f]
          Length = 308

 Score = 97.1 bits (241), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 34/147 (23%), Positives = 66/147 (44%), Gaps = 10/147 (6%)

Query: 25  QALYQI----DIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRK 80
           Q+LY      +I+     + I  ++  +  A+ EL  E      D E+ R +    +   
Sbjct: 167 QSLY-WNDDKEIVDTFVLKTIKRFDEKK-GANQELLPE-FKDDEDQEFARRLFRRTILNS 223

Query: 81  QHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYG 140
            +   L+S   T+ W   R+  +   I++  + E++   ++PV V ++EYV IA  +   
Sbjct: 224 DYYRHLVSEN-TKNWDLDRIAFMDVIIMQTALAEILSFPNIPVSVSLNEYVEIAKLYSTA 282

Query: 141 DEPKFINAVLDKVSRKEEIKRSGCVSA 167
               FIN  LD +    ++K+ G ++ 
Sbjct: 283 KSGSFINGTLDGIV--NQLKKEGKLTK 307


>gi|224026161|ref|ZP_03644527.1| hypothetical protein BACCOPRO_02917 [Bacteroides coprophilus DSM
           18228]
 gi|224019397|gb|EEF77395.1| hypothetical protein BACCOPRO_02917 [Bacteroides coprophilus DSM
           18228]
          Length = 308

 Score = 97.1 bits (241), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 29/142 (20%), Positives = 61/142 (42%), Gaps = 8/142 (5%)

Query: 25  QALYQI----DIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRK 80
           Q+LY      +I+     + I  ++      D +  +       D E+ R +    +   
Sbjct: 167 QSLY-WNDDKEIVDTFVLKTIKRFDPKN--GDKQELLPEFKDEEDQEFARRLFRRTILNA 223

Query: 81  QHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYG 140
            +   LIS   ++ W  +R+ ++   I++  + E++   ++PV V ++EYV IA  +   
Sbjct: 224 DYYRHLISEG-SKNWDLNRVAVMDVVIMQIALAEILSFPNIPVNVSLNEYVEIAKLYSTP 282

Query: 141 DEPKFINAVLDKVSRKEEIKRS 162
               FIN  LD +  + + +  
Sbjct: 283 KSGGFINGTLDGIVNQLKKENK 304


>gi|189462539|ref|ZP_03011324.1| hypothetical protein BACCOP_03229 [Bacteroides coprocola DSM 17136]
 gi|189430700|gb|EDU99684.1| hypothetical protein BACCOP_03229 [Bacteroides coprocola DSM 17136]
          Length = 308

 Score = 97.1 bits (241), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 27/142 (19%), Positives = 60/142 (42%), Gaps = 8/142 (5%)

Query: 25  QALYQI----DIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRK 80
           Q+LY      +I+     + I  ++      D +  +       D ++ R +    +   
Sbjct: 167 QSLY-WNDDKEIVDTFVLKTIKRFDPKN--GDKQELLPEFKDEEDQDFARRLFRRSILNA 223

Query: 81  QHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYG 140
            +   LIS   ++ W   R+ ++   I++  + E++   ++P+ V ++EYV IA  +   
Sbjct: 224 DYYRHLISEN-SKNWDLDRVAVMDVIIMQIALAEILSFPNIPINVSLNEYVEIAKLYSTP 282

Query: 141 DEPKFINAVLDKVSRKEEIKRS 162
               FIN  LD +  + + +  
Sbjct: 283 KSGGFINGTLDGIVNQLKKENK 304


>gi|260171339|ref|ZP_05757751.1| putative N utilization substance protein [Bacteroides sp. D2]
 gi|315919650|ref|ZP_07915890.1| conserved hypothetical protein [Bacteroides sp. D2]
 gi|313693525|gb|EFS30360.1| conserved hypothetical protein [Bacteroides sp. D2]
          Length = 308

 Score = 97.1 bits (241), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 34/147 (23%), Positives = 66/147 (44%), Gaps = 10/147 (6%)

Query: 25  QALYQI----DIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRK 80
           Q+LY      +I+     + I  ++  +  A+ EL  E      D E+ R +    +   
Sbjct: 167 QSLY-WNDDKEIVDTFVLKTIKRFDEKK-GANQELLPE-FKDDEDQEFARRLFRRTILNS 223

Query: 81  QHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYG 140
            +   L+S   T+ W   R+  +   I++  + E++   ++PV V ++EYV IA  +   
Sbjct: 224 DYYRHLVSEN-TKNWDLDRIAFMDVIIMQTALAEILSFPNIPVSVSLNEYVEIAKLYSTA 282

Query: 141 DEPKFINAVLDKVSRKEEIKRSGCVSA 167
               FIN  LD +    ++K+ G ++ 
Sbjct: 283 KSGSFINGTLDGIV--NQLKKEGKLTK 307


>gi|284929125|ref|YP_003421647.1| transcription antitermination factor NusB [cyanobacterium UCYN-A]
 gi|284809584|gb|ADB95289.1| transcription antitermination factor NusB [cyanobacterium UCYN-A]
          Length = 216

 Score = 97.1 bits (241), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 28/96 (29%), Positives = 50/96 (52%), Gaps = 6/96 (6%)

Query: 67  EWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVI 126
           ++   IIH +  +K+ +D  + + L + W   RL  I   ILR  V E++   ++P +V 
Sbjct: 118 KYAIEIIHSICRKKKELDNQLETVL-KDWQLRRLAKIDQDILRIAVAEIL-LLNIPEKVA 175

Query: 127 ISEYVCIAHDFFYGDEPKFINAVL----DKVSRKEE 158
           I+E V +A  +   D  +FIN VL    D +  +++
Sbjct: 176 INEAVELAKRYSDDDGYRFINGVLRRFVDHIKEEKK 211


>gi|255007968|ref|ZP_05280094.1| putative N utilization substance protein [Bacteroides fragilis
           3_1_12]
 gi|313145684|ref|ZP_07807877.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12]
 gi|313134451|gb|EFR51811.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12]
          Length = 308

 Score = 97.1 bits (241), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 32/147 (21%), Positives = 63/147 (42%), Gaps = 10/147 (6%)

Query: 25  QALYQI----DIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRK 80
           Q+LY      +I+     + I  +E  +     +  +       D E+ R +    +   
Sbjct: 167 QSLY-WNDDKEIVDTFVLKTIKRFEEKQGA--NQPLLPEFKDDEDQEFARRLFRRAILNA 223

Query: 81  QHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYG 140
            +   LIS   T+ W   R+  +   I++  + E++   ++PV V ++EYV IA  +   
Sbjct: 224 DYYRHLISEN-TKNWDLDRVAFMDVIIMQCALAEILSFPNIPVSVSLNEYVEIAKLYSTV 282

Query: 141 DEPKFINAVLDKVSRKEEIKRSGCVSA 167
               FIN  LD +    ++K+ G ++ 
Sbjct: 283 KSGSFINGTLDGIV--NQLKKEGKLTK 307


>gi|253563478|ref|ZP_04840935.1| conserved hypothetical protein [Bacteroides sp. 3_2_5]
 gi|265762654|ref|ZP_06091222.1| conserved hypothetical protein [Bacteroides sp. 2_1_16]
 gi|251947254|gb|EES87536.1| conserved hypothetical protein [Bacteroides sp. 3_2_5]
 gi|263255262|gb|EEZ26608.1| conserved hypothetical protein [Bacteroides sp. 2_1_16]
          Length = 308

 Score = 97.1 bits (241), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 32/147 (21%), Positives = 63/147 (42%), Gaps = 10/147 (6%)

Query: 25  QALYQI----DIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRK 80
           Q+LY      +I+     + I  +E  +     +  +       D E+ R +    +   
Sbjct: 167 QSLY-WNDDKEIVDTFVLKTIKRFEEKQGA--NQPLLPEFKDDEDQEFARRLFRRAILNA 223

Query: 81  QHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYG 140
            +   LIS   T+ W   R+  +   I++  + E++   ++PV V ++EYV IA  +   
Sbjct: 224 DYYRHLISEN-TKNWDLDRVAFMDVIIMQCALAEILSFPNIPVSVSLNEYVEIAKLYSTV 282

Query: 141 DEPKFINAVLDKVSRKEEIKRSGCVSA 167
               FIN  LD +    ++K+ G ++ 
Sbjct: 283 KSGSFINGTLDGIV--NQLKKEGKLTK 307


>gi|332877528|ref|ZP_08445275.1| transcription antitermination factor NusB [Capnocytophaga sp. oral
           taxon 329 str. F0087]
 gi|332684634|gb|EGJ57484.1| transcription antitermination factor NusB [Capnocytophaga sp. oral
           taxon 329 str. F0087]
          Length = 310

 Score = 96.7 bits (240), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 31/131 (23%), Positives = 63/131 (48%), Gaps = 3/131 (2%)

Query: 32  IIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCL 91
           I+     + I  ++  +  AD EL  E      D E+   +    +   ++   LIS   
Sbjct: 177 IVDTFVLKTIKRFDEAK-GADQELLPE-FKDEEDREFAHRLFRNTLLNAEYYRKLISDN- 233

Query: 92  TEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLD 151
           T+ W F+R+ ++   I++  + E++   ++P+ V ++EYV IA  +       ++N +LD
Sbjct: 234 TKNWEFNRIALMDLLIMQIALAEILTFPNIPLNVSLNEYVDIAKIYSTPRSGAYVNGLLD 293

Query: 152 KVSRKEEIKRS 162
            VS+K   ++ 
Sbjct: 294 AVSKKLVAEKK 304


>gi|302345746|ref|YP_003814099.1| transcription antitermination factor NusB [Prevotella
           melaninogenica ATCC 25845]
 gi|302149617|gb|ADK95879.1| transcription antitermination factor NusB [Prevotella
           melaninogenica ATCC 25845]
          Length = 333

 Score = 96.7 bits (240), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 28/125 (22%), Positives = 55/125 (44%), Gaps = 3/125 (2%)

Query: 31  DIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSC 90
           +++     + I  ++     AD EL  E      D ++   +    +         +S  
Sbjct: 150 EVVDTFVIKTIKRFDPAN-GADQELLPE-YRDEEDRDFALKLFRSTILNADDYQRYMSES 207

Query: 91  LTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVL 150
            +  W FSRL  +   I++  + E++   ++PV V I+EYV +A  +       +IN +L
Sbjct: 208 -SRNWDFSRLAYMDVVIMQIAIAEMLTFPNIPVTVTINEYVDLAKLYSTPRSGGYINGML 266

Query: 151 DKVSR 155
           D ++R
Sbjct: 267 DTIAR 271


>gi|160887367|ref|ZP_02068370.1| hypothetical protein BACOVA_05386 [Bacteroides ovatus ATCC 8483]
 gi|237722651|ref|ZP_04553132.1| conserved hypothetical protein [Bacteroides sp. 2_2_4]
 gi|299148943|ref|ZP_07042005.1| NusB family protein [Bacteroides sp. 3_1_23]
 gi|156107778|gb|EDO09523.1| hypothetical protein BACOVA_05386 [Bacteroides ovatus ATCC 8483]
 gi|229448461|gb|EEO54252.1| conserved hypothetical protein [Bacteroides sp. 2_2_4]
 gi|298513704|gb|EFI37591.1| NusB family protein [Bacteroides sp. 3_1_23]
          Length = 308

 Score = 96.7 bits (240), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 34/147 (23%), Positives = 66/147 (44%), Gaps = 10/147 (6%)

Query: 25  QALYQI----DIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRK 80
           Q+LY      +I+     + I  ++  +  A+ EL  E      D E+ R +    +   
Sbjct: 167 QSLY-WNDDKEIVDTFVLKTIKRFDEKK-GANQELLPE-FKDDEDQEFARRLFRRTILNS 223

Query: 81  QHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYG 140
            +   L+S   T+ W   R+  +   I++  + E++   ++PV V ++EYV IA  +   
Sbjct: 224 DYYRHLVSEN-TKNWDLDRIAFMDVIIMQTALAEILSFPNIPVSVSLNEYVEIAKLYSTA 282

Query: 141 DEPKFINAVLDKVSRKEEIKRSGCVSA 167
               FIN  LD +    ++K+ G ++ 
Sbjct: 283 KSGSFINGTLDGIV--NQLKKEGKLTK 307


>gi|195953014|ref|YP_002121304.1| NusB antitermination factor [Hydrogenobaculum sp. Y04AAS1]
 gi|195932626|gb|ACG57326.1| NusB antitermination factor [Hydrogenobaculum sp. Y04AAS1]
          Length = 139

 Score = 96.7 bits (240), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 37/141 (26%), Positives = 58/141 (41%), Gaps = 10/141 (7%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           R  AR  A ++LY  DI G   + I  E              +        ++  +I   
Sbjct: 5   RARAREIAFRSLYAWDISGGEISIISQEIINMS---------KPPLKKDSQKYTLLITKK 55

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
             +  ++ID  I+S L E W+   L  I  +ILR    EL+          I +Y+ IA 
Sbjct: 56  FGENIENIDKKIASYL-ENWNLDDLGSIEKAILRTAFTELLYIKPKKNIQAIIDYIEIAS 114

Query: 136 DFFYGDEPKFINAVLDKVSRK 156
           ++     P FIN +L K+S+ 
Sbjct: 115 NYGNKKTPSFINGILSKLSKD 135


>gi|119357565|ref|YP_912209.1| sun protein [Chlorobium phaeobacteroides DSM 266]
 gi|119354914|gb|ABL65785.1| sun protein [Chlorobium phaeobacteroides DSM 266]
          Length = 444

 Score = 96.7 bits (240), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 33/139 (23%), Positives = 58/139 (41%), Gaps = 13/139 (9%)

Query: 19  ARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMD 78
           AR AA++AL  I+     +  I+                 +     D      +++GV+ 
Sbjct: 3   AREAALKALQAIEPGKEKSDRIVHAILDR-----------ATMNRQDRALTTELVNGVLR 51

Query: 79  RKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFF 138
            ++ ID +IS        F +   +L +ILR GV +L+    +P    +SE V +A  + 
Sbjct: 52  MRKKIDFIISKFYHH--RFEKAAPVLQNILRLGVYQLLFLEKIPEWAAVSECVDLARKYK 109

Query: 139 YGDEPKFINAVLDKVSRKE 157
                K +N VL K++   
Sbjct: 110 GERMAKLVNGVLRKITPDN 128


>gi|2766598|gb|AAB95441.1| NUSB [Shigella flexneri]
          Length = 101

 Score = 96.7 bits (240), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 23/104 (22%), Positives = 43/104 (41%), Gaps = 13/104 (12%)

Query: 21  LAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRK 80
             AVQALY   +      ++  ++             E     VD+ +FR ++ GV  + 
Sbjct: 11  ECAVQALYSWQLSQNDIADVEYQFLA-----------EQDVKDVDVLYFRELLAGVATKT 59

Query: 81  QHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVE 124
            ++D L+   L+       L  +  ++LR  + EL +   VP +
Sbjct: 60  AYLDGLMKPYLSR--LLEELGQVEKAVLRIALYELSKRSDVPYK 101


>gi|121533700|ref|ZP_01665527.1| sun protein [Thermosinus carboxydivorans Nor1]
 gi|121307691|gb|EAX48606.1| sun protein [Thermosinus carboxydivorans Nor1]
          Length = 442

 Score = 96.7 bits (240), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 28/140 (20%), Positives = 61/140 (43%), Gaps = 13/140 (9%)

Query: 19  ARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMD 78
           AR  A++ + ++DI G      +++  + R   D            D  +   +++G + 
Sbjct: 3   AREVALKVINRVDIDGAYANIALAQEMSQRDLTDR-----------DRRFITELVYGTVK 51

Query: 79  RKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFF 138
               +D ++S   +      ++  ++ +ILR G+ ++     +PV    +E V +A  + 
Sbjct: 52  AGATLDWILSHYSSR--PLDKIHPVIRNILRMGIYQIFFLSRIPVSAACNEAVKLAQKYG 109

Query: 139 YGDEPKFINAVLDKVSRKEE 158
           +    KF+NAVL    R  +
Sbjct: 110 HAGTVKFVNAVLRSAGRSPD 129


>gi|53712491|ref|YP_098483.1| putative nitrogen utilization substance protein [Bacteroides
           fragilis YCH46]
 gi|52215356|dbj|BAD47949.1| putative nitrogen utilization substance protein [Bacteroides
           fragilis YCH46]
          Length = 258

 Score = 96.7 bits (240), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 32/147 (21%), Positives = 63/147 (42%), Gaps = 10/147 (6%)

Query: 25  QALYQI----DIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRK 80
           Q+LY      +I+     + I  +E  +     +  +       D E+ R +    +   
Sbjct: 117 QSLY-WNDDKEIVDTFVLKTIKRFEEKQGA--NQPLLPEFKDDEDQEFARRLFRRAILNA 173

Query: 81  QHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYG 140
            +   LIS   T+ W   R+  +   I++  + E++   ++PV V ++EYV IA  +   
Sbjct: 174 DYYRHLISEN-TKNWDLDRVAFMDVIIMQCALAEILSFPNIPVSVSLNEYVEIAKLYSTV 232

Query: 141 DEPKFINAVLDKVSRKEEIKRSGCVSA 167
               FIN  LD +    ++K+ G ++ 
Sbjct: 233 KSGSFINGTLDGIV--NQLKKEGKLTK 257


>gi|153807762|ref|ZP_01960430.1| hypothetical protein BACCAC_02045 [Bacteroides caccae ATCC 43185]
 gi|149129371|gb|EDM20585.1| hypothetical protein BACCAC_02045 [Bacteroides caccae ATCC 43185]
          Length = 308

 Score = 96.3 bits (239), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 34/147 (23%), Positives = 66/147 (44%), Gaps = 10/147 (6%)

Query: 25  QALYQI----DIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRK 80
           Q+LY      +I+     + I  ++  +  A+ EL  E      D E+ R +    +   
Sbjct: 167 QSLY-WNDDKEIVDTFVLKTIKRFDEKK-GANQELLPE-FKDDEDQEFARRLFRRTILNS 223

Query: 81  QHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYG 140
            +   L+S   T+ W   R+  +   I++  + E++   ++PV V ++EYV IA  +   
Sbjct: 224 DYYRHLVSEN-TKNWELDRIAFMDVIIMQTALAEILSFPNIPVSVSLNEYVEIAKLYSTS 282

Query: 141 DEPKFINAVLDKVSRKEEIKRSGCVSA 167
               FIN  LD +    ++K+ G ++ 
Sbjct: 283 KSGSFINGTLDGIV--NQLKKEGKLTK 307


>gi|325298378|ref|YP_004258295.1| NusB antitermination factor [Bacteroides salanitronis DSM 18170]
 gi|324317931|gb|ADY35822.1| NusB antitermination factor [Bacteroides salanitronis DSM 18170]
          Length = 308

 Score = 96.3 bits (239), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 27/142 (19%), Positives = 59/142 (41%), Gaps = 8/142 (5%)

Query: 25  QALYQI----DIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRK 80
           Q+LY      +I+     + I  ++      + +  +       D ++ R +    +   
Sbjct: 167 QSLY-WNDDKEIVDTFVLKTIKRFDPKN--GEKQELLPEFKDEEDRDFARRLFRRSILNA 223

Query: 81  QHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYG 140
            +   LIS   +  W   R+ ++   I++  + E++   ++PV V ++EYV IA  +   
Sbjct: 224 DYYRHLISEN-SRNWDLKRVAVMDVIIMQIALAEILSFPNIPVNVSLNEYVEIAKLYSTP 282

Query: 141 DEPKFINAVLDKVSRKEEIKRS 162
               FIN  LD +  + + +  
Sbjct: 283 KSGGFINGTLDGIVNQLKKENK 304


>gi|150006310|ref|YP_001301054.1| putative N utilization substance protein [Bacteroides vulgatus ATCC
           8482]
 gi|212691834|ref|ZP_03299962.1| hypothetical protein BACDOR_01329 [Bacteroides dorei DSM 17855]
 gi|237708040|ref|ZP_04538521.1| conserved hypothetical protein [Bacteroides sp. 9_1_42FAA]
 gi|237724809|ref|ZP_04555290.1| conserved hypothetical protein [Bacteroides sp. D4]
 gi|254885163|ref|ZP_05257873.1| conserved hypothetical protein [Bacteroides sp. 4_3_47FAA]
 gi|265756189|ref|ZP_06090518.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA]
 gi|294776295|ref|ZP_06741779.1| transcription antitermination factor NusB [Bacteroides vulgatus
           PC510]
 gi|319641350|ref|ZP_07996045.1| N utilization substance protein [Bacteroides sp. 3_1_40A]
 gi|149934734|gb|ABR41432.1| putative N utilization substance protein [Bacteroides vulgatus ATCC
           8482]
 gi|212665590|gb|EEB26162.1| hypothetical protein BACDOR_01329 [Bacteroides dorei DSM 17855]
 gi|229437004|gb|EEO47081.1| conserved hypothetical protein [Bacteroides dorei 5_1_36/D4]
 gi|229457868|gb|EEO63589.1| conserved hypothetical protein [Bacteroides sp. 9_1_42FAA]
 gi|254837956|gb|EET18265.1| conserved hypothetical protein [Bacteroides sp. 4_3_47FAA]
 gi|263233780|gb|EEZ19389.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA]
 gi|294449882|gb|EFG18398.1| transcription antitermination factor NusB [Bacteroides vulgatus
           PC510]
 gi|317387031|gb|EFV67915.1| N utilization substance protein [Bacteroides sp. 3_1_40A]
          Length = 308

 Score = 96.3 bits (239), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 32/142 (22%), Positives = 59/142 (41%), Gaps = 8/142 (5%)

Query: 25  QALYQI----DIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRK 80
           Q+LY      +I+     + I  ++     A  EL  E      D ++ R +    +   
Sbjct: 167 QSLY-WNDDKEIVDTFVLKTIKRFDEKN-GAKQELLPE-FKDEEDQDFARRLFRRTILNA 223

Query: 81  QHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYG 140
            +   LIS   T+ W   R+  +   I++  + E++   ++PV V ++EYV IA  +   
Sbjct: 224 DYYRHLISEN-TKNWDLDRVAFMDVVIMQIALAEILSFPNIPVSVSLNEYVEIAKLYSTP 282

Query: 141 DEPKFINAVLDKVSRKEEIKRS 162
               FIN  LD +    + +  
Sbjct: 283 KSGGFINGTLDGIVNSLKKENK 304


>gi|37520905|ref|NP_924282.1| transcription antitermination protein NusB [Gloeobacter violaceus
           PCC 7421]
 gi|39931743|sp|Q7NKZ0|NUSB_GLOVI RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|35211900|dbj|BAC89277.1| transcription termination factor [Gloeobacter violaceus PCC 7421]
          Length = 211

 Score = 96.3 bits (239), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 27/96 (28%), Positives = 49/96 (51%), Gaps = 1/96 (1%)

Query: 66  LEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEV 125
             +   ++   +    ++D L+ +C+ E W   RL  I   ILR  ++E++E  SVP  V
Sbjct: 113 RAYAFELLGAFVREGDNLDKLLDTCM-EGWQVERLTRIDRDILRLALVEMVELKSVPFRV 171

Query: 126 IISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKR 161
            I E V +A  +      +FIN VL +V +  ++++
Sbjct: 172 AIDEAVELAKKYSTDTAVRFINGVLRRVVQHLQLEQ 207


>gi|120436864|ref|YP_862550.1| antitermination protein NusB [Gramella forsetii KT0803]
 gi|117579014|emb|CAL67483.1| antitermination protein NusB [Gramella forsetii KT0803]
          Length = 337

 Score = 96.3 bits (239), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 23/98 (23%), Positives = 47/98 (47%), Gaps = 1/98 (1%)

Query: 63  HVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVP 122
             D E+   +        + +   +    T  W   R+  +   +++  + E ++  S+P
Sbjct: 230 EEDKEFAIKLFRKTYLNDEDLSEEMLGK-TPNWDKDRIAEVDMVLIKMAICEFLKFTSIP 288

Query: 123 VEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIK 160
           V+V I+EY+ IA ++       FIN VLDK+S++ + +
Sbjct: 289 VKVTINEYLEIAKEYSTPKSSIFINGVLDKLSKEYQTE 326


>gi|293380300|ref|ZP_06626374.1| transcription antitermination factor NusB [Lactobacillus crispatus
           214-1]
 gi|290923115|gb|EFE00044.1| transcription antitermination factor NusB [Lactobacillus crispatus
           214-1]
          Length = 131

 Score = 96.3 bits (239), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 25/139 (17%), Positives = 57/139 (41%), Gaps = 11/139 (7%)

Query: 17  GIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGV 76
             +R  A+QA+Y   +          E E           V ++ L     + + +I GV
Sbjct: 4   HESRKVAMQAVY---LANQEPDLTAEEVEAKV--------VATLNLKQLSAYSKKLIEGV 52

Query: 77  MDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHD 136
           ++ ++++   ++S L + W   R+   + +I+   + E+     +  +  ++E + +   
Sbjct: 53  LEDRKNLQSELTSHLKKGWRLERVSQTVVAIMEVALFEIKHSDEIDAKAAVNEALNLCDK 112

Query: 137 FFYGDEPKFINAVLDKVSR 155
           F    E  FIN +L    +
Sbjct: 113 FAEPKEKPFINGMLANFVK 131


>gi|327183851|gb|AEA32298.1| transcription termination factor [Lactobacillus amylovorus GRL
           1118]
          Length = 130

 Score = 96.3 bits (239), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 26/138 (18%), Positives = 55/138 (39%), Gaps = 11/138 (7%)

Query: 17  GIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGV 76
             +R  A+QA+Y   +          E E           V ++ L     + + +I GV
Sbjct: 4   HESRKVAMQAIY---LANQEPDLNAEEVEAKV--------VAALNLKQLSAYSKKLIEGV 52

Query: 77  MDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHD 136
           ++ +  +   +S  L + W   R+  I+ +I+   + E+     +  +  ++E + +  +
Sbjct: 53  LENRVDLQSALSEHLKKGWRLERVSQIVVAIMEVALFEIKNSDEIDPKAAVNEALNLCDE 112

Query: 137 FFYGDEPKFINAVLDKVS 154
           F    E  FIN +L    
Sbjct: 113 FAEPKEKPFINGMLANFV 130


>gi|303239358|ref|ZP_07325886.1| sun protein [Acetivibrio cellulolyticus CD2]
 gi|302593144|gb|EFL62864.1| sun protein [Acetivibrio cellulolyticus CD2]
          Length = 450

 Score = 96.3 bits (239), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 28/139 (20%), Positives = 63/139 (45%), Gaps = 13/139 (9%)

Query: 20  RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79
           R  A++ LY I+  G  +   +++Y             +     +D  +   +++G +  
Sbjct: 7   RETALKILYDINKSGAYSNIALNKYLE-----------DKALSGLDKAFITELVYGTLKW 55

Query: 80  KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139
           +  ID +I    + K   ++L   + +ILR GV +++    +P     +E V +A  + +
Sbjct: 56  RLSIDYIIDQFSSVK--INKLSPWILNILRLGVYQIVYMSKIPESAACNESVNLAKRYGH 113

Query: 140 GDEPKFINAVLDKVSRKEE 158
               +++NA+L  V+R + 
Sbjct: 114 SASSRYVNAMLRNVARSKN 132


>gi|325270436|ref|ZP_08137040.1| NusB family protein [Prevotella multiformis DSM 16608]
 gi|324987232|gb|EGC19211.1| NusB family protein [Prevotella multiformis DSM 16608]
          Length = 385

 Score = 96.3 bits (239), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 27/125 (21%), Positives = 54/125 (43%), Gaps = 3/125 (2%)

Query: 31  DIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSC 90
           +++     + I  ++      D EL  E      D ++   +    +         +S  
Sbjct: 175 EVVDTFVIKTIKRFDPAN-GEDQELLPE-YRDEEDRDFAVKLFRATILNADDYQHYMSES 232

Query: 91  LTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVL 150
            +  W FSRL  +   I++  + E++   ++PV V I+EYV +A  +       +IN +L
Sbjct: 233 -SRNWDFSRLAYMDVVIMQIAIAEMLTFPNIPVSVTINEYVDLAKLYSTPRSGGYINGML 291

Query: 151 DKVSR 155
           D ++R
Sbjct: 292 DTIAR 296


>gi|198277117|ref|ZP_03209648.1| hypothetical protein BACPLE_03325 [Bacteroides plebeius DSM 17135]
 gi|198269615|gb|EDY93885.1| hypothetical protein BACPLE_03325 [Bacteroides plebeius DSM 17135]
          Length = 308

 Score = 96.3 bits (239), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 28/142 (19%), Positives = 60/142 (42%), Gaps = 8/142 (5%)

Query: 25  QALYQI----DIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRK 80
           Q+LY      +I+     + I  +       + +  +       D ++ R +    +   
Sbjct: 167 QSLY-WNDDKEIVDTFVLKTIKRFNPEN--GEKQELLPEFKDEEDQDFARRLFRRSILNA 223

Query: 81  QHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYG 140
            +   LIS   ++ W  SR+ ++   I++  + E++   ++PV V ++EYV IA  +   
Sbjct: 224 DYYRHLISEN-SKNWDLSRVAVMDVIIMQIALAEILSFPNIPVNVSLNEYVEIAKLYSTP 282

Query: 141 DEPKFINAVLDKVSRKEEIKRS 162
               FIN  LD +  + + +  
Sbjct: 283 KSGGFINGTLDGIVNQLKKENK 304


>gi|170077553|ref|YP_001734191.1| transcription antitermination protein NusB [Synechococcus sp. PCC
           7002]
 gi|254772663|sp|B1XIZ3|NUSB_SYNP2 RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|169885222|gb|ACA98935.1| transcription antitermination factor NusB [Synechococcus sp. PCC
           7002]
          Length = 213

 Score = 96.3 bits (239), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 28/95 (29%), Positives = 44/95 (46%), Gaps = 2/95 (2%)

Query: 68  WFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVII 127
           +   I+  +  R   I  +I   L   W + RL  +   ILR  V E++     P +V I
Sbjct: 119 FALEILTTLRRRNDQIKEVIDGSLV-DWQYHRLPRLDRDILRIAVAEILF-LETPYKVAI 176

Query: 128 SEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRS 162
           +E V +A  +   D  +FIN VL +VS +   + S
Sbjct: 177 NEAVELAKRYSDEDGHRFINGVLRRVSDRLRAEDS 211


>gi|86133163|ref|ZP_01051745.1| NusB family protein [Polaribacter sp. MED152]
 gi|85820026|gb|EAQ41173.1| NusB family protein [Polaribacter sp. MED152]
          Length = 312

 Score = 95.9 bits (238), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 26/94 (27%), Positives = 46/94 (48%), Gaps = 1/94 (1%)

Query: 63  HVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVP 122
             D ++   +    M + +  +  I+   T  W   R+  I   +++  + E +   S+P
Sbjct: 205 KDDEDFVADLFRKTMLKHKTYEQDITDK-TPNWETDRIADIDMILIKMAITEFVNFPSIP 263

Query: 123 VEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRK 156
           V V I+EY+ IA D+       FIN VLDK+S++
Sbjct: 264 VRVTINEYIEIAKDYSTTKSSYFINGVLDKISKE 297


>gi|307566362|ref|ZP_07628801.1| transcription antitermination factor NusB [Prevotella amnii CRIS
           21A-A]
 gi|307344939|gb|EFN90337.1| transcription antitermination factor NusB [Prevotella amnii CRIS
           21A-A]
          Length = 313

 Score = 95.9 bits (238), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 28/125 (22%), Positives = 57/125 (45%), Gaps = 3/125 (2%)

Query: 31  DIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSC 90
           +I+     + I  ++  +  AD EL  E      D ++   +    +   +     +S  
Sbjct: 150 EIVDTFVVKTIKRFDPVK-GADQELLPE-FKDDEDRKFAIDLFRATIINAEVYQGYMSQA 207

Query: 91  LTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVL 150
            +  W FSRL  +   I++  + E++   ++P+ V I+EYV +A  +       +IN +L
Sbjct: 208 -SRNWDFSRLAYMDVVIMQIAIAEMVNFPNIPINVSINEYVNLAKLYSTPRSGGYINGML 266

Query: 151 DKVSR 155
           D ++R
Sbjct: 267 DSIAR 271


>gi|256843408|ref|ZP_05548896.1| transcription antitermination factor NusB [Lactobacillus crispatus
           125-2-CHN]
 gi|256614828|gb|EEU20029.1| transcription antitermination factor NusB [Lactobacillus crispatus
           125-2-CHN]
          Length = 131

 Score = 95.9 bits (238), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 25/139 (17%), Positives = 58/139 (41%), Gaps = 11/139 (7%)

Query: 17  GIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGV 76
             +R  A+QA+Y   +          E E           V ++ L     + + +I GV
Sbjct: 4   HESRKVAMQAVY---LANQEPDLTAEEVEAKV--------VATLNLKQLSAYSKKLIEGV 52

Query: 77  MDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHD 136
           ++ ++++   ++S L + W   R+   + +I+   + E+     +  +  ++E + +  +
Sbjct: 53  LEDRKNLQSELTSHLKKGWRLERVSQTVVAIMEVALFEIKHSDEIDAKAAVNEALNLCDE 112

Query: 137 FFYGDEPKFINAVLDKVSR 155
           F    E  FIN +L    +
Sbjct: 113 FAEPKEKPFINGMLANFVK 131


>gi|110598393|ref|ZP_01386666.1| sun protein:transcription antitermination factor NusB [Chlorobium
           ferrooxidans DSM 13031]
 gi|110340002|gb|EAT58504.1| sun protein:transcription antitermination factor NusB [Chlorobium
           ferrooxidans DSM 13031]
          Length = 447

 Score = 95.9 bits (238), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 29/139 (20%), Positives = 61/139 (43%), Gaps = 13/139 (9%)

Query: 18  IARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVM 77
            AR  A+  L  ++     + +I+     +R    + L+       +D      +++GV+
Sbjct: 3   TARETALNVLQALETGKKRSDQIL-----HRTLEQSALN------RIDRALATGLVNGVL 51

Query: 78  DRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDF 137
             +  +D +IS     K    +   +L +ILR G+ +++    VP    ++E V +A  +
Sbjct: 52  RYRLQLDFIISRYYHHK--LEKAAPVLKNILRLGLYQILFLDKVPDWAAVNECVKLAKKY 109

Query: 138 FYGDEPKFINAVLDKVSRK 156
                 K +N VL K++ +
Sbjct: 110 KGDRMSKLVNGVLRKITPQ 128


>gi|325858411|ref|ZP_08172573.1| transcription antitermination factor NusB [Prevotella denticola
           CRIS 18C-A]
 gi|325483049|gb|EGC86037.1| transcription antitermination factor NusB [Prevotella denticola
           CRIS 18C-A]
          Length = 359

 Score = 95.6 bits (237), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 27/127 (21%), Positives = 52/127 (40%), Gaps = 7/127 (5%)

Query: 35  CSTTEIISEYETY---RFCADTELDVE---SVYLHVDLEWFRVIIHGVMDRKQHIDLLIS 88
               E++  +      RF    + D E         D ++   +    +         +S
Sbjct: 171 NDDKEVVDTFVIKTIKRFDPANKEDQELLPEYRDEEDRDFAVKLFRATILNADDYQHYMS 230

Query: 89  SCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINA 148
              +  W FSRL  +   I++  + E++   ++PV V I+EYV +A  +       +IN 
Sbjct: 231 ES-SRNWDFSRLAYMDVIIMQIAIAEMLTFPNIPVTVTINEYVDLAKLYSTPRSGGYING 289

Query: 149 VLDKVSR 155
           +LD ++R
Sbjct: 290 MLDTIAR 296


>gi|294673022|ref|YP_003573638.1| transcription antitermination factor NusB [Prevotella ruminicola
           23]
 gi|294473573|gb|ADE82962.1| transcription antitermination factor NusB [Prevotella ruminicola
           23]
          Length = 282

 Score = 95.6 bits (237), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 30/135 (22%), Positives = 55/135 (40%), Gaps = 6/135 (4%)

Query: 25  QALYQID---IIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQ 81
           Q+LY  D   I+     + I  ++         L         D  + R +    +    
Sbjct: 120 QSLYWNDDKTIVDTFVLKTIKRFDEANGPKQDLLPEWDSEEEKD--FARKVFRAAIMNAD 177

Query: 82  HIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGD 141
                +S   +  W FSRL  +   +++  + E++   +VP+ V I+EYV IA  +    
Sbjct: 178 EYQRYMSEA-SRNWDFSRLAYMDIILMQIAIAEMMTLPNVPISVTINEYVEIAKFYSTPK 236

Query: 142 EPKFINAVLDKVSRK 156
              +IN +LD ++R 
Sbjct: 237 SAGYINGMLDGIARN 251


>gi|327313923|ref|YP_004329360.1| transcription antitermination factor NusB [Prevotella denticola
           F0289]
 gi|326944316|gb|AEA20201.1| transcription antitermination factor NusB [Prevotella denticola
           F0289]
          Length = 359

 Score = 95.6 bits (237), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 27/127 (21%), Positives = 52/127 (40%), Gaps = 7/127 (5%)

Query: 35  CSTTEIISEYETY---RFCADTELDVE---SVYLHVDLEWFRVIIHGVMDRKQHIDLLIS 88
               E++  +      RF    + D E         D ++   +    +         +S
Sbjct: 171 NDDKEVVDTFVIKTIKRFDPANKEDQELLPEYRDEEDRDFAVKLFRATILNADDYQHYMS 230

Query: 89  SCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINA 148
              +  W FSRL  +   I++  + E++   ++PV V I+EYV +A  +       +IN 
Sbjct: 231 ES-SRNWDFSRLAYMDVIIMQIAIAEMLTFPNIPVTVTINEYVDLAKLYSTPRSGGYING 289

Query: 149 VLDKVSR 155
           +LD ++R
Sbjct: 290 MLDTIAR 296


>gi|323466274|gb|ADX69961.1| Transcriptional termination factor [Lactobacillus helveticus H10]
          Length = 150

 Score = 95.6 bits (237), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 26/139 (18%), Positives = 58/139 (41%), Gaps = 13/139 (9%)

Query: 17  GIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVY-LHVDLEWFRVIIHG 75
             +R  A+QA+Y            ++  E      D E  V +   L     + + +I G
Sbjct: 24  HESRKVAMQAVY------------LANQEPDLSAEDVEAKVVATLNLKQLSAYSKKLIEG 71

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
           V++ ++ +   +++ L + W   R+  I+ +I+   + E+     +  +  ++E + +  
Sbjct: 72  VLENREDLQSELTNHLKKGWHLERVSQIVVAIMEVALFEIKNSDEIDPKAAVNEALNLCD 131

Query: 136 DFFYGDEPKFINAVLDKVS 154
           +F    E  FIN +L    
Sbjct: 132 EFAEPKEKPFINGMLANFV 150


>gi|313124106|ref|YP_004034365.1| transcription termination factor [Lactobacillus delbrueckii subsp.
           bulgaricus ND02]
 gi|312280669|gb|ADQ61388.1| Transcription termination factor [Lactobacillus delbrueckii subsp.
           bulgaricus ND02]
          Length = 110

 Score = 95.6 bits (237), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 18/90 (20%), Positives = 41/90 (45%)

Query: 67  EWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVI 126
            + + ++ GV+D++  +   +S+ L + W   RL     +IL   + E++    +     
Sbjct: 21  AYSQELVSGVIDKQTELRDKLSANLKQGWRLERLSKTSLAILEVALYEMLYSPVIEDRSA 80

Query: 127 ISEYVCIAHDFFYGDEPKFINAVLDKVSRK 156
           I+E + +  +F       FIN +L    ++
Sbjct: 81  INEALNLCDEFDDPKSKAFINGILANFVQE 110


>gi|323435897|ref|ZP_01048839.2| NusB family protein [Dokdonia donghaensis MED134]
 gi|321496212|gb|EAQ40073.2| NusB family protein [Dokdonia donghaensis MED134]
          Length = 314

 Score = 95.6 bits (237), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 20/99 (20%), Positives = 50/99 (50%), Gaps = 1/99 (1%)

Query: 63  HVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVP 122
             D+ +   ++   +  +  +   I+   T  W   R+  +   +++  + E ++  ++P
Sbjct: 207 EEDVHFGTELLEKTVANETFLANEITEN-TPNWDKERIADVDMVLIKMALCEFLKFPTIP 265

Query: 123 VEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKR 161
           V+V I+EY+ I+ ++       FIN +LDK+ ++ E ++
Sbjct: 266 VKVTINEYLEISKEYSTPKSSIFINGILDKLVKQYEREK 304


>gi|228473251|ref|ZP_04058006.1| NusB family protein [Capnocytophaga gingivalis ATCC 33624]
 gi|228275401|gb|EEK14193.1| NusB family protein [Capnocytophaga gingivalis ATCC 33624]
          Length = 310

 Score = 95.2 bits (236), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 26/132 (19%), Positives = 56/132 (42%), Gaps = 9/132 (6%)

Query: 40  IISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEK---WS 96
           I+   +        +          D ++   ++   +      D      L EK   W 
Sbjct: 180 IVKILKGLSEGGVADFLPPLFKDKSDKDFAIELLRKAVLN----DEAFHKYLVEKTPKWD 235

Query: 97  FSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRK 156
             R+  +   +++ G+ E ++  S+PV+V ++EYV IA ++       F+N +LD +S+ 
Sbjct: 236 ADRIAELDAIMIKMGIAEFLKFPSIPVKVTLNEYVEIAKEYSTPKSSVFVNGILDTLSK- 294

Query: 157 EEIKRSGCVSAI 168
            + ++ G +  I
Sbjct: 295 -DFQQEGKLKKI 305


>gi|169831743|ref|YP_001717725.1| sun protein [Candidatus Desulforudis audaxviator MP104C]
 gi|169638587|gb|ACA60093.1| sun protein [Candidatus Desulforudis audaxviator MP104C]
          Length = 452

 Score = 95.2 bits (236), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 27/140 (19%), Positives = 51/140 (36%), Gaps = 13/140 (9%)

Query: 19  ARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMD 78
           AR  A+  L  ++  G      ++               E     +D  +   + +G + 
Sbjct: 6   AREIALHVLKAVEADGAYANLALNRALE-----------EFRPSKLDRAFATELAYGTLR 54

Query: 79  RKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFF 138
               +D ++S  L +        +   +ILR G  +L     VP      E V +A  + 
Sbjct: 55  TLNTLDWIVSRYLQQ--PLGDQTVWSRNILRLGAYQLFYMDKVPAGAACFEAVELAKKYG 112

Query: 139 YGDEPKFINAVLDKVSRKEE 158
                +F+N VL  V+R ++
Sbjct: 113 TPGTARFVNGVLRNVARHKD 132


>gi|258515525|ref|YP_003191747.1| sun protein [Desulfotomaculum acetoxidans DSM 771]
 gi|257779230|gb|ACV63124.1| sun protein [Desulfotomaculum acetoxidans DSM 771]
          Length = 452

 Score = 95.2 bits (236), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 29/140 (20%), Positives = 59/140 (42%), Gaps = 13/140 (9%)

Query: 19  ARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMD 78
           AR  A+  L  +D  G      +++    R            +  +D  +   +++G + 
Sbjct: 6   AREMALIVLKAVDQEGAYANIALNQVLEQR-----------DFNKLDRAFTTELVYGTLR 54

Query: 79  RKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFF 138
               +D +++  L      S     + +ILR G  +L+  H VP     +E   ++H + 
Sbjct: 55  ALNTVDWVLAQFLKH--PLSSQTAWIRNILRLGTYQLLFMHRVPASAACNEAAKLSHKYG 112

Query: 139 YGDEPKFINAVLDKVSRKEE 158
           +  + KF+N VL  ++R+ E
Sbjct: 113 HKGQVKFVNGVLRNIARQHE 132


>gi|313886911|ref|ZP_07820614.1| transcription antitermination factor NusB [Porphyromonas
           asaccharolytica PR426713P-I]
 gi|312923608|gb|EFR34414.1| transcription antitermination factor NusB [Porphyromonas
           asaccharolytica PR426713P-I]
          Length = 347

 Score = 95.2 bits (236), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 22/105 (20%), Positives = 49/105 (46%), Gaps = 3/105 (2%)

Query: 61  YLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHS 120
           +   D  +   ++   +  ++  D +++  L   W   R+ ++   ++   V E + C  
Sbjct: 244 HSDRDRLYAHQLLSETLLHREEYDAMLTPRLD-NWEQDRVALVDMILMEMAVAEALNCPD 302

Query: 121 VPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRSGCV 165
           + + V I+EY+ +A  +       FINAVLD++    ++K  G +
Sbjct: 303 IALVVTINEYIELAKVYDNSKSASFINAVLDRLF--TDLKSEGKL 345


>gi|193214990|ref|YP_001996189.1| sun protein [Chloroherpeton thalassium ATCC 35110]
 gi|193088467|gb|ACF13742.1| sun protein [Chloroherpeton thalassium ATCC 35110]
          Length = 443

 Score = 95.2 bits (236), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 31/141 (21%), Positives = 59/141 (41%), Gaps = 13/141 (9%)

Query: 18  IARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVM 77
            AR  AVQAL ++++    +   ++ + +            +    VD  +   I++G +
Sbjct: 3   KAREIAVQALREVEVNHAKSDTALNHFFSI-----------TALEPVDRAFTMQIVYGTL 51

Query: 78  DRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDF 137
             K  ID +I         + ++D+ + +ILR G  +L+    VP    ++E V +A   
Sbjct: 52  REKMKIDHVIKQFYRH--DYDKMDIDVKNILRIGAYQLLFLSKVPRWAAVNESVELAKKL 109

Query: 138 FYGDEPKFINAVLDKVSRKEE 158
                   +N VL  +S   E
Sbjct: 110 KGQFLGNLVNGVLRNISNNLE 130


>gi|46447257|ref|YP_008622.1| putative transcription termination factor, nusB [Candidatus
           Protochlamydia amoebophila UWE25]
 gi|46400898|emb|CAF24347.1| putative transcription termination factor, nusB [Candidatus
           Protochlamydia amoebophila UWE25]
          Length = 154

 Score = 95.2 bits (236), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 26/104 (25%), Positives = 55/104 (52%), Gaps = 1/104 (0%)

Query: 58  ESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIE 117
           E      ++   +  +  ++ +   ID  ISS ++  + F+R+  +  +ILR GV EL  
Sbjct: 8   ELSISKKNVRLAQEKVQKIVVQLAEIDSKISS-VSLSYHFNRIQTVTKNILRLGVFELFF 66

Query: 118 CHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKR 161
              +P +V+I+E + ++  F   +   F+NA+LD++ +K + + 
Sbjct: 67  ETDIPQKVVIAEAIRLSRKFSTPESASFVNALLDQLYQKSKGEE 110


>gi|295132726|ref|YP_003583402.1| antitermination protein NusB [Zunongwangia profunda SM-A87]
 gi|294980741|gb|ADF51206.1| antitermination protein NusB [Zunongwangia profunda SM-A87]
          Length = 303

 Score = 95.2 bits (236), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 28/104 (26%), Positives = 50/104 (48%), Gaps = 3/104 (2%)

Query: 65  DLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVE 124
           D E+   +      +   +   +    T  W   R+  I   +L+  + E +E  S+PV+
Sbjct: 198 DKEFAVNLFRKTYLKDGKLSNEMQGK-TPNWDKDRIAEIDTVLLKMAICEFLEFPSIPVK 256

Query: 125 VIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRSGCVSAI 168
           V I+EY+ I+ ++       FIN +LDK+S+  E K  G ++ I
Sbjct: 257 VTINEYLEISKEYSTPKSSIFINGILDKLSK--EYKTDGKLNKI 298


>gi|68171632|ref|ZP_00544999.1| N utilization substance protein B, putative [Ehrlichia chaffeensis
           str. Sapulpa]
 gi|88658441|ref|YP_507582.1| putative N utilization substance protein B [Ehrlichia chaffeensis
           str. Arkansas]
 gi|67998953|gb|EAM85637.1| N utilization substance protein B, putative [Ehrlichia chaffeensis
           str. Sapulpa]
 gi|88599898|gb|ABD45367.1| putative N utilization substance protein B [Ehrlichia chaffeensis
           str. Arkansas]
          Length = 174

 Score = 94.8 bits (235), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 37/142 (26%), Positives = 67/142 (47%), Gaps = 6/142 (4%)

Query: 12  LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71
              ++   R  A+Q  Y +     +  +I +  +        E+      + +D +    
Sbjct: 11  WHSKKTTTRFLAIQGTYSMIFNNYTINDIDNLIDYL-----YEMKEVLDLIQIDNQLLLK 65

Query: 72  IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
           I++ ++     I+  I++ L EKWS  R+++I  SI++  V ELI C      +II+EYV
Sbjct: 66  IMNTMLLTFNTINSTIATFLNEKWSIDRINLISLSIIKTAVCELI-CSDTDAVIIINEYV 124

Query: 132 CIAHDFFYGDEPKFINAVLDKV 153
            IA       +  FINA+L++V
Sbjct: 125 NIASHILERTDVNFINAILNQV 146


>gi|227878894|ref|ZP_03996799.1| transcriptional termination factor [Lactobacillus crispatus JV-V01]
 gi|256849770|ref|ZP_05555201.1| transcriptional termination factor [Lactobacillus crispatus
           MV-1A-US]
 gi|262046531|ref|ZP_06019492.1| transcriptional antitermination factor NusB [Lactobacillus
           crispatus MV-3A-US]
 gi|295693204|ref|YP_003601814.1| transcription termination factor [Lactobacillus crispatus ST1]
 gi|227861528|gb|EEJ69142.1| transcriptional termination factor [Lactobacillus crispatus JV-V01]
 gi|256713259|gb|EEU28249.1| transcriptional termination factor [Lactobacillus crispatus
           MV-1A-US]
 gi|260572980|gb|EEX29539.1| transcriptional antitermination factor NusB [Lactobacillus
           crispatus MV-3A-US]
 gi|295031310|emb|CBL50789.1| Transcription termination factor [Lactobacillus crispatus ST1]
          Length = 131

 Score = 94.8 bits (235), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 25/139 (17%), Positives = 58/139 (41%), Gaps = 11/139 (7%)

Query: 17  GIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGV 76
             +R  A+QA+Y   +          E E           V ++ L     + + +I GV
Sbjct: 4   HESRKVAMQAVY---LANQEPDLTAEEVEAKV--------VATLNLKQLSAYSKKLIEGV 52

Query: 77  MDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHD 136
           ++ ++++   ++S L + W   R+   + +I+   + E+     +  +  ++E + +  +
Sbjct: 53  LEDRKNLQSELTSHLKKGWRLERVSQTVVAIMEVALFEINHSDEIDAKAAVNEALNLCDE 112

Query: 137 FFYGDEPKFINAVLDKVSR 155
           F    E  FIN +L    +
Sbjct: 113 FAEPKEKPFINGMLANFVK 131


>gi|315651135|ref|ZP_07904167.1| rRNA (cytosine-5-)-methyltransferase [Eubacterium saburreum DSM
           3986]
 gi|315486600|gb|EFU76950.1| rRNA (cytosine-5-)-methyltransferase [Eubacterium saburreum DSM
           3986]
          Length = 444

 Score = 94.8 bits (235), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 34/139 (24%), Positives = 63/139 (45%), Gaps = 14/139 (10%)

Query: 20  RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79
           R   ++AL  ID+ G  + ++I          D  L+  S     D  +F  ++HGV++ 
Sbjct: 7   RTLILEALMLIDVEGEYSHKVI----------DMALEKYSYLSKADRGFFSKVVHGVVEY 56

Query: 80  KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139
           +  +D +I      K    R+  ++  ILR  + +++    VP   II+E V +      
Sbjct: 57  RLQLDFIIKKYNGGK----RIKPVIREILRMAIYQILYMDRVPDRAIINEAVNLVKLRRL 112

Query: 140 GDEPKFINAVLDKVSRKEE 158
                F+N +L K+S ++E
Sbjct: 113 TALTGFVNGILRKISSEKE 131


>gi|312899118|ref|ZP_07758496.1| NusB family protein [Megasphaera micronuciformis F0359]
 gi|310619785|gb|EFQ03367.1| NusB family protein [Megasphaera micronuciformis F0359]
          Length = 166

 Score = 94.8 bits (235), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 24/124 (19%), Positives = 50/124 (40%), Gaps = 6/124 (4%)

Query: 36  STTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKW 95
               +  E E       TE + E+        +   ++  V +  + ++ LI +   + W
Sbjct: 48  DAHAVPFESEDEVLSEATEDNSENDT----NSYCEYLVSTVSEHGEELNDLIRTY-AKGW 102

Query: 96  SFSRLDMILCSILRAGVLELIECHS-VPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVS 154
              +++    +I++    E +     +   +II+E V +A  F   D  KF+N +L   +
Sbjct: 103 DLRQMNKADKTIMKMAFCEFVYPKEKLASAIIINEAVLLAKQFGGADSSKFVNGILGAYA 162

Query: 155 RKEE 158
           R  E
Sbjct: 163 RTHE 166


>gi|291542594|emb|CBL15704.1| ribosomal RNA small subunit methyltransferase RsmB [Ruminococcus
           bromii L2-63]
          Length = 446

 Score = 94.8 bits (235), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 30/118 (25%), Positives = 54/118 (45%), Gaps = 2/118 (1%)

Query: 41  ISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRL 100
           I     Y   A      E+    VD  +   +++GV++R+  +D +I S    K    ++
Sbjct: 15  IENEGAYSNIALNNAIKENRLSGVDSSFVSALVYGVLERRITLDYIIRSY--SKIPLRKI 72

Query: 101 DMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEE 158
           +    +ILR G+L+L+    VP    ++E V +A          FIN +L  ++R E+
Sbjct: 73  ETKTKNILRLGILQLLFMDKVPDSAAVNESVNLAKKHKLQKSSGFINGILRNITRAED 130


>gi|86605070|ref|YP_473833.1| transcription antitermination protein NusB [Synechococcus sp.
           JA-3-3Ab]
 gi|119390839|sp|Q2JQT6|NUSB_SYNJA RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|86553612|gb|ABC98570.1| transcription antitermination factor NusB [Synechococcus sp.
           JA-3-3Ab]
          Length = 288

 Score = 94.8 bits (235), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 32/138 (23%), Positives = 52/138 (37%), Gaps = 9/138 (6%)

Query: 25  QALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLH--------VDLEWFRVIIHGV 76
           QAL  ++    S   I+ E       A   L V                  +   ++  +
Sbjct: 132 QALEHLEQRLYSVRRILDEVVQLSQKAVNRLGVALSMPELLHIAQAQEVRAYALQLLTAL 191

Query: 77  MDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHD 136
              K+ ID  +   L   W   R+  I   ILR  V+E+    S P +V I+E V +A  
Sbjct: 192 RTHKEAIDARLQGVLV-GWQLKRVGRIERDILRLAVVEMEILRSSPDKVAINEAVELAKK 250

Query: 137 FFYGDEPKFINAVLDKVS 154
           +   +   F+N VL ++ 
Sbjct: 251 YGDPEAAAFVNGVLRRLV 268


>gi|330995945|ref|ZP_08319840.1| transcription antitermination factor NusB [Paraprevotella
           xylaniphila YIT 11841]
 gi|329574284|gb|EGG55859.1| transcription antitermination factor NusB [Paraprevotella
           xylaniphila YIT 11841]
          Length = 310

 Score = 94.8 bits (235), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 24/99 (24%), Positives = 49/99 (49%), Gaps = 1/99 (1%)

Query: 58  ESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIE 117
                  D E+   +    +   ++   LIS   T+ W F+R+ ++   I++  + E++ 
Sbjct: 201 PEFKDEEDREFAHRLFRNTLLNAEYYRKLISDN-TKNWEFNRIALMDLLIMQIALAEILT 259

Query: 118 CHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRK 156
             ++P+ V ++EYV IA  +       ++N +LD VS+K
Sbjct: 260 FPNIPLNVSLNEYVDIAKIYSTPRSGAYVNGLLDAVSKK 298


>gi|297571422|ref|YP_003697196.1| NusB antitermination factor [Arcanobacterium haemolyticum DSM
           20595]
 gi|296931769|gb|ADH92577.1| NusB antitermination factor [Arcanobacterium haemolyticum DSM
           20595]
          Length = 159

 Score = 94.4 bits (234), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 31/166 (18%), Positives = 76/166 (45%), Gaps = 13/166 (7%)

Query: 1   MTIQDNKKDLKLSHR--RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVE 58
           M+ ++  +  + + R  R + R  A+  LY+ D+ G    ++ S  E     + ++  ++
Sbjct: 1   MSNEERTQQRRNNGRKGRSLQRQRALDVLYEADVRGAE-HDLASLLEERSQLSPSQQPIQ 59

Query: 59  SVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIEC 118
                   ++ ++I+    +    +D +I +  + +W+ +R+ ++  ++LR G  EL+  
Sbjct: 60  --------KYGQLIVSTYAEWADDVDSMIEAA-SPQWALARMSVVDRNLLRIGATELMY- 109

Query: 119 HSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRSGC 164
             VP  +++ E   +  DF       F   VL++++     + SG 
Sbjct: 110 LDVPTAIVVKEITALVRDFSTDKAVGFTMGVLNRIAEIRSEETSGR 155


>gi|34540589|ref|NP_905068.1| NusB family protein [Porphyromonas gingivalis W83]
 gi|34396902|gb|AAQ65967.1| NusB family protein [Porphyromonas gingivalis W83]
          Length = 364

 Score = 94.4 bits (234), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 30/139 (21%), Positives = 55/139 (39%), Gaps = 7/139 (5%)

Query: 28  YQIDIIGCSTTEIISEYE---TYRFCADTELDV---ESVYLHVDLEWFRVIIHGVMDRKQ 81
           YQ      +  EI+ E+      R   DT+       +     D  +   ++   +   Q
Sbjct: 222 YQTIRQENAPIEIVKEFVLKTIRRIEQDTDPSAILLPAYKEKDDAVFGTTLLRNAIINGQ 281

Query: 82  HIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGD 141
               +I   L   W   R+  +   I++  + EL+   ++PV V I+EY+ ++  F    
Sbjct: 282 EYRHIIRENLI-NWEVDRIADMDMLIMQLAIAELLHFPNIPVLVTINEYIDLSKLFSTPK 340

Query: 142 EPKFINAVLDKVSRKEEIK 160
              F+N +LD V +    K
Sbjct: 341 SGTFVNGLLDAVVKSLREK 359


>gi|270339970|ref|ZP_06006596.2| NusB family protein [Prevotella bergensis DSM 17361]
 gi|270333141|gb|EFA43927.1| NusB family protein [Prevotella bergensis DSM 17361]
          Length = 369

 Score = 94.4 bits (234), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 25/125 (20%), Positives = 48/125 (38%), Gaps = 3/125 (2%)

Query: 31  DIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSC 90
           DI+     + I  +          L         D ++   +    +         +S  
Sbjct: 175 DIVDTFVVKTIKRFAPENRSKQDLLPEYKD--EEDKDFACKLFRATILNADDYHRYMSET 232

Query: 91  LTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVL 150
            +  W FSRL  +   I++  + E++   ++P  V I+EYV +A  +       +IN +L
Sbjct: 233 -SRNWDFSRLAYMDVVIMQIAIAEMLTFPNIPATVTINEYVELAKLYSTPRSGAYINGML 291

Query: 151 DKVSR 155
           D + R
Sbjct: 292 DSIGR 296


>gi|227893296|ref|ZP_04011101.1| transcription termination [Lactobacillus ultunensis DSM 16047]
 gi|227864876|gb|EEJ72297.1| transcription termination [Lactobacillus ultunensis DSM 16047]
          Length = 130

 Score = 94.4 bits (234), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 26/138 (18%), Positives = 57/138 (41%), Gaps = 11/138 (7%)

Query: 17  GIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGV 76
             +R  A+QA+Y   +          E E           V ++ L     + + +I GV
Sbjct: 4   HESRKVAMQAVY---LANQEPDLNAEEVEAKV--------VATLNLKQLSAYSKKLIEGV 52

Query: 77  MDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHD 136
           +  ++ +   +++ L + W   R+  I+ +I+   + E+ E   +  +  ++E + +  +
Sbjct: 53  LKNREDLQSELTNHLKKGWRLERVSQIVVAIMEVALFEIKESDEIDPKAAVNEALNLCDE 112

Query: 137 FFYGDEPKFINAVLDKVS 154
           F    E  FIN +L    
Sbjct: 113 FAEPKEKPFINGMLANFV 130


>gi|254423258|ref|ZP_05036976.1| transcription antitermination factor NusB, putative [Synechococcus
           sp. PCC 7335]
 gi|196190747|gb|EDX85711.1| transcription antitermination factor NusB, putative [Synechococcus
           sp. PCC 7335]
          Length = 281

 Score = 94.0 bits (233), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 32/143 (22%), Positives = 59/143 (41%), Gaps = 13/143 (9%)

Query: 21  LAAVQALYQIDIIGCSTTEIISEYETYRFCA-----------DTELDVESVYLHVDLEWF 69
            AA Q L +          + S+ ++    A           + E  V  +       + 
Sbjct: 136 EAADQLLREHQQKVADIETVRSQIQSAIITAKLTITKIKTTLEPEQLVALLSRDDIRGYA 195

Query: 70  RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISE 129
             ++   +  ++ ID  ++  + EKWS  RL  +   ILR  ++E++    VP +V I E
Sbjct: 196 CELLGNWISYQKAIDAQLNEAM-EKWSIRRLARVDRDILRLAMIEIVYM-DVPKKVAIDE 253

Query: 130 YVCIAHDFFYGDEPKFINAVLDK 152
            + +A  +   D  +FIN VL +
Sbjct: 254 AIEMAKRYSDEDGYRFINGVLRR 276


>gi|213858030|ref|ZP_03385001.1| transcription antitermination protein NusB [Salmonella enterica
           subsp. enterica serovar Typhi str. M223]
          Length = 59

 Score = 94.0 bits (233), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 19/51 (37%), Positives = 29/51 (56%)

Query: 104 LCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVS 154
             ++LR  + EL +   VP +V I+E + +A  F   D  KF+N VLDK +
Sbjct: 1   EKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVLDKAA 51


>gi|58337606|ref|YP_194191.1| transcriptional termination factor [Lactobacillus acidophilus NCFM]
 gi|227904246|ref|ZP_04022051.1| transcriptional termination factor [Lactobacillus acidophilus ATCC
           4796]
 gi|58254923|gb|AAV43160.1| transcriptional termination factor [Lactobacillus acidophilus NCFM]
 gi|227867894|gb|EEJ75315.1| transcriptional termination factor [Lactobacillus acidophilus ATCC
           4796]
          Length = 130

 Score = 94.0 bits (233), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 25/138 (18%), Positives = 57/138 (41%), Gaps = 11/138 (7%)

Query: 17  GIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGV 76
             +R  A+QA+Y   +          E E           V ++ L+    + + +I GV
Sbjct: 4   HESRKVAMQAVY---LANQEPDLNAEEVEAKV--------VATLNLNQLSAYSKKLIEGV 52

Query: 77  MDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHD 136
           ++ ++ +   ++S L + W   R+   + +I+   + E+     +  +  ++E + +  +
Sbjct: 53  LENREDLQSELTSHLKKGWRLERVSQTIVAIMEIALFEIKNSDEIEPKAAVNEALNLCDE 112

Query: 137 FFYGDEPKFINAVLDKVS 154
           F    E  FIN +L    
Sbjct: 113 FAEPKEKPFINGMLANFV 130


>gi|332300781|ref|YP_004442702.1| NusB antitermination factor [Porphyromonas asaccharolytica DSM
           20707]
 gi|332177844|gb|AEE13534.1| NusB antitermination factor [Porphyromonas asaccharolytica DSM
           20707]
          Length = 347

 Score = 94.0 bits (233), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 22/105 (20%), Positives = 49/105 (46%), Gaps = 3/105 (2%)

Query: 61  YLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHS 120
           +   D  +   ++   +  ++  D +++  L   W   R+ ++   ++   V E + C  
Sbjct: 244 HSDRDRLYAHQLLSETLLHREDYDAMLTPRLD-NWEQDRVALVDMILMEMAVAEALNCPD 302

Query: 121 VPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRSGCV 165
           + + V I+EY+ +A  +       FINAVLD++    ++K  G +
Sbjct: 303 IALVVTINEYIELAKVYDNSKSASFINAVLDRLF--TDLKSEGKL 345


>gi|119485390|ref|ZP_01619718.1| transcription antitermination protein NusB [Lyngbya sp. PCC 8106]
 gi|119457146|gb|EAW38272.1| transcription antitermination protein NusB [Lyngbya sp. PCC 8106]
          Length = 210

 Score = 94.0 bits (233), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 25/88 (28%), Positives = 42/88 (47%), Gaps = 2/88 (2%)

Query: 66  LEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEV 125
             +   I+  +  R+  ID +++  L   W  +RL  I   ILR  V EL+       +V
Sbjct: 113 AAYAIEILTEIHARRTEIDEILNQALV-DWQINRLPRIDRDILRIAVTELLY-LGTQEQV 170

Query: 126 IISEYVCIAHDFFYGDEPKFINAVLDKV 153
            ++E + +A  +   D  +FIN VL +V
Sbjct: 171 ALNEAIELAKRYSDEDSYRFINGVLRRV 198


>gi|283455658|ref|YP_003360222.1| N utilization substance protein [Bifidobacterium dentium Bd1]
 gi|283102292|gb|ADB09398.1| nusB N utilization substance protein [Bifidobacterium dentium Bd1]
          Length = 86

 Score = 93.6 bits (232), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 20/69 (28%), Positives = 33/69 (47%), Gaps = 1/69 (1%)

Query: 86  LISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKF 145
           ++    +  W   R+ ++  +ILR  V E++    VP  V I E + +A      D P F
Sbjct: 1   MLDEH-STGWKVKRMGVVDRNILRIAVWEIMFNDDVPNMVAIDEALGLAKTLCDDDSPAF 59

Query: 146 INAVLDKVS 154
           I+ +L  VS
Sbjct: 60  IHGLLSAVS 68


>gi|228470129|ref|ZP_04055038.1| NusB family protein [Porphyromonas uenonis 60-3]
 gi|228308267|gb|EEK17122.1| NusB family protein [Porphyromonas uenonis 60-3]
          Length = 347

 Score = 93.6 bits (232), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 20/93 (21%), Positives = 44/93 (47%), Gaps = 1/93 (1%)

Query: 61  YLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHS 120
           +   D  +   ++   +  ++  D +++  L   W   R+ ++   ++   V E + C  
Sbjct: 244 HSDRDRLYAHQLLSETLLHREEYDAMLTPRLD-NWEQDRVALVDMILMEMAVAEALSCPD 302

Query: 121 VPVEVIISEYVCIAHDFFYGDEPKFINAVLDKV 153
           + + V I+EY+ +A  +       FINAVLD++
Sbjct: 303 IALVVTINEYIELAKVYDNAKSASFINAVLDRL 335


>gi|238854805|ref|ZP_04645135.1| transcription antitermination factor NusB [Lactobacillus jensenii
           269-3]
 gi|260664036|ref|ZP_05864889.1| transcription antitermination factor NusB [Lactobacillus jensenii
           SJ-7A-US]
 gi|282933883|ref|ZP_06339231.1| transcription antitermination factor NusB [Lactobacillus jensenii
           208-1]
 gi|313472312|ref|ZP_07812804.1| transcription antitermination factor NusB [Lactobacillus jensenii
           1153]
 gi|238832595|gb|EEQ24902.1| transcription antitermination factor NusB [Lactobacillus jensenii
           269-3]
 gi|239529835|gb|EEQ68836.1| transcription antitermination factor NusB [Lactobacillus jensenii
           1153]
 gi|260561922|gb|EEX27891.1| transcription antitermination factor NusB [Lactobacillus jensenii
           SJ-7A-US]
 gi|281301972|gb|EFA94226.1| transcription antitermination factor NusB [Lactobacillus jensenii
           208-1]
          Length = 133

 Score = 93.6 bits (232), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 28/137 (20%), Positives = 57/137 (41%), Gaps = 11/137 (8%)

Query: 17  GIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGV 76
             +R  A+QA++   +        I + ET           +S+ L     +   II GV
Sbjct: 4   HDSRRIAMQAIF---LANGEPDLTIEQVETKV--------AKSLDLKEIPAYAHEIIAGV 52

Query: 77  MDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHD 136
           + ++  I+  IS  L + W   R++ I  +I+   + E+ +  ++     ++E + +  +
Sbjct: 53  LAKRPEIEADISKYLKKGWRLERVNRISVAIMEVAIFEISQSDAISAPAAVNEALILCEE 112

Query: 137 FFYGDEPKFINAVLDKV 153
           F       FIN +L   
Sbjct: 113 FDDPKSKSFINGILANF 129


>gi|145219990|ref|YP_001130699.1| sun protein [Prosthecochloris vibrioformis DSM 265]
 gi|145206154|gb|ABP37197.1| sun protein [Chlorobium phaeovibrioides DSM 265]
          Length = 445

 Score = 93.6 bits (232), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 32/157 (20%), Positives = 61/157 (38%), Gaps = 17/157 (10%)

Query: 17  GIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGV 76
             AR  A            +  + +     +      ++  ES     D  +   +++GV
Sbjct: 2   TSARELAF-----------TLLQALETGNRHSDSLLHDMLQESSLSRTDRAFATSLVNGV 50

Query: 77  MDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHD 136
           +  +  +D +I    +      +    + +ILR G  +L+    VP   +++E V +A  
Sbjct: 51  LRYRLQLDFVIGHFYSHN--LQKASPAIRNILRLGAWQLLFLDRVPAWAVVNESVRLARR 108

Query: 137 FFYGDEPKFINAVLDKVSRK----EEIKRSGCVSAIT 169
           F      K +NAVL K+S +    EE  R+   +A  
Sbjct: 109 FKGERMAKLVNAVLRKISPETIHLEEWTRAMEPAARL 145


>gi|260101433|ref|ZP_05751670.1| transcriptional termination factor [Lactobacillus helveticus DSM
           20075]
 gi|260084773|gb|EEW68893.1| transcriptional termination factor [Lactobacillus helveticus DSM
           20075]
          Length = 135

 Score = 93.6 bits (232), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 25/138 (18%), Positives = 58/138 (42%), Gaps = 11/138 (7%)

Query: 17  GIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGV 76
             +R  A+QA+Y   +          + ET          V ++ L     + + +I GV
Sbjct: 9   HESRKVAMQAVY---LANQEPDLSAEDVETKV--------VATLNLKQLSAYSKKLIEGV 57

Query: 77  MDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHD 136
           ++ ++ +   +++ L + W   R+  I+ +I+   + E+     +  +  ++E + +  +
Sbjct: 58  LENREDLQSELTNHLKKSWRLERVSQIVVAIMEVALFEIKNSDEIDPKAAVNEALNLCDE 117

Query: 137 FFYGDEPKFINAVLDKVS 154
           F    E  FIN +L    
Sbjct: 118 FAEPKEKPFINGMLANFV 135


>gi|284044527|ref|YP_003394867.1| NusB antitermination factor [Conexibacter woesei DSM 14684]
 gi|283948748|gb|ADB51492.1| NusB antitermination factor [Conexibacter woesei DSM 14684]
          Length = 133

 Score = 93.2 bits (231), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 36/139 (25%), Positives = 53/139 (38%), Gaps = 27/139 (19%)

Query: 26  ALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDL 85
           ALYQ D+ G    + +      +  A+    +    L    E+               D 
Sbjct: 3   ALYQHDLTGRPLEQTLP-----KDAANFTRALAQAALARQAEF---------------DA 42

Query: 86  LISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEV------IISEYVCIAHDFFY 139
           LIS    E W+  R+  +  SILR  +LE++    VP E        I E +  A  +  
Sbjct: 43  LISRH-AEGWTLQRIAPLERSILRVSLLEMLHPGDVPAERPIPPEGAIDEAIETAKAYCG 101

Query: 140 GDEPKFINAVLDKVSRKEE 158
            D P F+N VL  + R E 
Sbjct: 102 ADAPGFVNGVLAAILRAER 120


>gi|269120364|ref|YP_003308541.1| NusB antitermination factor [Sebaldella termitidis ATCC 33386]
 gi|268614242|gb|ACZ08610.1| NusB antitermination factor [Sebaldella termitidis ATCC 33386]
          Length = 130

 Score = 93.2 bits (231), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 33/139 (23%), Positives = 58/139 (41%), Gaps = 12/139 (8%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           R   R    + L++ ++I       ++E  +       E          D+E+ R  I  
Sbjct: 3   RRKLREEIFKLLFERELIDNDMDVRLAEVLSENNITKEE----------DIEFMREYIKN 52

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
           V + K+ I+  I S L   WSF  L  +  ++L+    E+ E      E++I+E V +A 
Sbjct: 53  VTEHKESIEDKIKSKLV-GWSFDILGTVEKTLLKMSFYEITEAG-TGHEIVINETVELAK 110

Query: 136 DFFYGDEPKFINAVLDKVS 154
            +     P FIN +L  + 
Sbjct: 111 KYGEDKTPDFINGILADLV 129


>gi|325680270|ref|ZP_08159830.1| ribosomal RNA small subunit methyltransferase B [Ruminococcus albus
           8]
 gi|324107979|gb|EGC02235.1| ribosomal RNA small subunit methyltransferase B [Ruminococcus albus
           8]
          Length = 429

 Score = 93.2 bits (231), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 28/119 (23%), Positives = 58/119 (48%), Gaps = 2/119 (1%)

Query: 41  ISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRL 100
           + E  +Y      E    S +   D ++   + +GV++R+  +D +I+  L++    ++L
Sbjct: 15  LDENSSYSNILLDEALARSDFDKRDKKFISALFYGVLERRLTLDAMIAE-LSKN-PKNKL 72

Query: 101 DMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEI 159
           +  L +ILR+G+ +L    SVP    + E V +A          F+N +L +  R+++ 
Sbjct: 73  NNTLRNILRSGLYQLKYMDSVPDNAAVDESVEMAKKLRNPASAGFVNGLLREFIRRDKA 131


>gi|225010642|ref|ZP_03701112.1| NusB antitermination factor [Flavobacteria bacterium MS024-3C]
 gi|225005195|gb|EEG43147.1| NusB antitermination factor [Flavobacteria bacterium MS024-3C]
          Length = 315

 Score = 93.2 bits (231), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 31/107 (28%), Positives = 53/107 (49%), Gaps = 3/107 (2%)

Query: 62  LHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSV 121
           L  D E+ + ++      K+ I    ++  T KW   R+  I   +L+  + EL+   S+
Sbjct: 207 LEDDAEFAQNLLVKTAL-KESILAKETADKTPKWDKDRIADIDGILLKMSICELLFFPSI 265

Query: 122 PVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRSGCVSAI 168
           PV V I+EY+ IA ++       FIN +LD +S+  E K  G +  +
Sbjct: 266 PVRVTINEYLEIAKEYSTPKSSIFINGILDSLSK--EYKDQGRLEKV 310


>gi|158320464|ref|YP_001512971.1| sun protein [Alkaliphilus oremlandii OhILAs]
 gi|158140663|gb|ABW18975.1| sun protein [Alkaliphilus oremlandii OhILAs]
          Length = 445

 Score = 93.2 bits (231), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 29/139 (20%), Positives = 60/139 (43%), Gaps = 14/139 (10%)

Query: 20  RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79
           R  A++ LY+I++            E +   A  +      Y  +D      +++GV++ 
Sbjct: 4   REGALKVLYEINVN-----------EAFSNIALNKELNNESYNLLDRNLLTELVYGVLEN 52

Query: 80  KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139
           + +ID ++S      +   +++    ++LR G+ +L+    VP    ++E V ++  +  
Sbjct: 53  QIYIDHVLSQF--SNFQLDKMNPYTLNLLRLGIYQLLFLDRVPSFAAVNETVNLSKKYC- 109

Query: 140 GDEPKFINAVLDKVSRKEE 158
                FIN VL  V R   
Sbjct: 110 KKTTGFINGVLRNVQRNRN 128


>gi|315023990|gb|EFT36992.1| Transcription termination protein NusB [Riemerella anatipestifer
           RA-YM]
          Length = 301

 Score = 93.2 bits (231), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 26/114 (22%), Positives = 52/114 (45%), Gaps = 3/114 (2%)

Query: 48  RFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSI 107
           R    +   ++ +    D  + + ++   ++  +  ++ +   L + W   R+ ++   I
Sbjct: 190 REGEPSHTLIKIIKDEEDRSFAQKLLQYSLNHWEDTEVKLKERL-KNWELDRISLMDRVI 248

Query: 108 LRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKR 161
           L A + EL      P +VII+EY+ I+  F       FIN +L K +  E+I R
Sbjct: 249 LIAAITELDHFPLTPSKVIINEYIEISKAFSTDKSQVFINGLLGKYA--EDINR 300


>gi|78189086|ref|YP_379424.1| Fmu, rRNA SAM-dependent methyltransferase [Chlorobium
           chlorochromatii CaD3]
 gi|78171285|gb|ABB28381.1| Fmu, rRNA SAM-dependent methyltransferase [Chlorobium
           chlorochromatii CaD3]
          Length = 429

 Score = 93.2 bits (231), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 27/137 (19%), Positives = 53/137 (38%), Gaps = 13/137 (9%)

Query: 17  GIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGV 76
             AR  A+Q L  ++     +  ++ ++              S    V+      +++GV
Sbjct: 2   STAREVALQVLQALEKSSERSDALLHKHLE-----------ASGLERVERALATELVNGV 50

Query: 77  MDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHD 136
           +  +  +D  IS  L           +L +ILR G  +L+    +P    ++E V +A  
Sbjct: 51  LRWQLQLDSRIS--LAYHHKLEAAAPVLRNILRLGAYQLLFLTKIPRWAAVNECVKLARK 108

Query: 137 FFYGDEPKFINAVLDKV 153
           +      K +N VL  +
Sbjct: 109 YKGERMAKLVNGVLRHL 125


>gi|39938929|ref|NP_950695.1| transcription termination factor [Onion yellows phytoplasma OY-M]
 gi|39722038|dbj|BAD04528.1| transcription termination factor [Onion yellows phytoplasma OY-M]
          Length = 149

 Score = 93.2 bits (231), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 31/159 (19%), Positives = 66/159 (41%), Gaps = 30/159 (18%)

Query: 10  LKLSHRRGIARLA---AVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDL 66
           +K +  +  +RL     ++ LYQ D    + T                  +     +   
Sbjct: 1   MKHTQNKKESRLLRIEVMKLLYQYDFYQNNLT------------------LSQTNPNPIF 42

Query: 67  EWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVI 126
            +F+ II       + ID +I+  L   +  +RL+ +  +I+R    EL+E  ++   +I
Sbjct: 43  TFFQKIIT----NLKFIDEIITKSLY-DYKINRLNKVDRAIIRLATYELLET-NISHAII 96

Query: 127 ISEYVCIAHDFF---YGDEPKFINAVLDKVSRKEEIKRS 162
           I E + +   F       + KF N +LD++ ++ ++ + 
Sbjct: 97  IDEAIELTKQFCNLNDEKQHKFNNKLLDQIYQQLQMYKK 135


>gi|256851330|ref|ZP_05556719.1| transcription antitermination factor NusB [Lactobacillus jensenii
           27-2-CHN]
 gi|260660754|ref|ZP_05861669.1| transcription antitermination factor NusB [Lactobacillus jensenii
           115-3-CHN]
 gi|282933225|ref|ZP_06338612.1| transcription antitermination factor NusB [Lactobacillus jensenii
           208-1]
 gi|297206200|ref|ZP_06923595.1| transcription antitermination factor NusB [Lactobacillus jensenii
           JV-V16]
 gi|256616392|gb|EEU21580.1| transcription antitermination factor NusB [Lactobacillus jensenii
           27-2-CHN]
 gi|260548476|gb|EEX24451.1| transcription antitermination factor NusB [Lactobacillus jensenii
           115-3-CHN]
 gi|281302729|gb|EFA94944.1| transcription antitermination factor NusB [Lactobacillus jensenii
           208-1]
 gi|297149326|gb|EFH29624.1| transcription antitermination factor NusB [Lactobacillus jensenii
           JV-V16]
          Length = 133

 Score = 93.2 bits (231), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 30/137 (21%), Positives = 58/137 (42%), Gaps = 11/137 (8%)

Query: 17  GIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGV 76
             +R  A+QA++   +        I + ET           +S+ L V   +   II GV
Sbjct: 4   HDSRRIAMQAIF---LANGEPDLTIEQVETKV--------AKSLDLKVIPAYAHEIIAGV 52

Query: 77  MDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHD 136
           + +K  I+  IS  L + W   R++ I  +I+   + E+ +  ++     ++E + +  +
Sbjct: 53  LAKKSEIEADISKYLRKGWRLERVNRISVAIIEVAIFEISQSDAISAPAAVNEALILCEE 112

Query: 137 FFYGDEPKFINAVLDKV 153
           F       FIN +L   
Sbjct: 113 FDDPKSKSFINGILANF 129


>gi|89890544|ref|ZP_01202054.1| putative antitermination protein NusB [Flavobacteria bacterium
           BBFL7]
 gi|89517459|gb|EAS20116.1| putative antitermination protein NusB [Flavobacteria bacterium
           BBFL7]
          Length = 312

 Score = 92.9 bits (230), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 23/104 (22%), Positives = 49/104 (47%), Gaps = 1/104 (0%)

Query: 57  VESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELI 116
            E +    D+++   +    +  ++     I    T  W   R+  I   ++     E +
Sbjct: 199 PELIKDEDDVKFTMDLFRKTLFNREEFLERIEGK-TPNWEQDRIAQIDLVLIMMAQCEFL 257

Query: 117 ECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIK 160
           + +S+PV+V ++EY+ I+ D+       FIN +LD +S++ E +
Sbjct: 258 KFNSIPVKVSLNEYLEISKDYSTPKSSFFINGILDNLSKEYEKE 301


>gi|313897409|ref|ZP_07830952.1| transcription antitermination factor NusB [Clostridium sp. HGF2]
 gi|312957779|gb|EFR39404.1| transcription antitermination factor NusB [Clostridium sp. HGF2]
          Length = 125

 Score = 92.9 bits (230), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 33/140 (23%), Positives = 62/140 (44%), Gaps = 16/140 (11%)

Query: 14  HRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVII 73
           + R   R  A+ +LYQ  ++     E       Y      E+D     + +D   ++ + 
Sbjct: 2   NSRHKLRELAMTSLYQHFLLQKDIKE-----CVYDNSETNEIDPFLYTVTIDAIRYQDV- 55

Query: 74  HGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCI 133
                   +ID  I++ L + W+F+RL  +  +IL     EL +  + P  ++I E V +
Sbjct: 56  --------YIDK-INAALRQDWTFARLGFVEQAILMMAACEL-DLETAPKAIVIDEAVTL 105

Query: 134 AHDFFYGDEPKFINAVLDKV 153
           A  +   +  + IN VLD++
Sbjct: 106 AKKYCDDETYRLINGVLDRL 125


>gi|300775935|ref|ZP_07085795.1| conserved hypothetical protein [Chryseobacterium gleum ATCC 35910]
 gi|300505485|gb|EFK36623.1| conserved hypothetical protein [Chryseobacterium gleum ATCC 35910]
          Length = 301

 Score = 92.9 bits (230), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 25/111 (22%), Positives = 48/111 (43%), Gaps = 1/111 (0%)

Query: 48  RFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSI 107
           R   ++   ++ +    D  +   ++   ++  ++ +  +   L E W   R+ ++   I
Sbjct: 190 REDEESRTLIKMIKDEDDKTFAAKLLKDTLNNWENNEKKLEERL-ENWDLERVSLMDKVI 248

Query: 108 LRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEE 158
           L   + EL      P  VII+EY+ IA  F       FIN +LDK  + + 
Sbjct: 249 LSTAIAELDNFAFTPSRVIINEYIEIAKVFATDRSNIFINGILDKYCKDQN 299


>gi|161507739|ref|YP_001577700.1| transcription termination [Lactobacillus helveticus DPC 4571]
 gi|160348728|gb|ABX27402.1| transcription termination [Lactobacillus helveticus DPC 4571]
          Length = 130

 Score = 92.9 bits (230), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 26/139 (18%), Positives = 58/139 (41%), Gaps = 13/139 (9%)

Query: 17  GIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVY-LHVDLEWFRVIIHG 75
             +R  A+QA+Y            ++  E      D E  V +   L     + + +I G
Sbjct: 4   HESRKVAMQAVY------------LANQEPDLSAEDVEAKVVATLNLKQLSAYSKKLIEG 51

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
           V++ ++ +   +++ L + W   R+  I+ +I+   + E+     +  +  ++E + +  
Sbjct: 52  VLENREDLQSELTNHLKKSWRLERVSQIVVAIMEVALFEIKNSDKIDPKAAVNEALNLCD 111

Query: 136 DFFYGDEPKFINAVLDKVS 154
           +F    E  FIN +L    
Sbjct: 112 EFAEPKEKPFINGMLANFV 130


>gi|147678123|ref|YP_001212338.1| tRNA and rRNA cytosine-C5-methylases [Pelotomaculum
           thermopropionicum SI]
 gi|146274220|dbj|BAF59969.1| tRNA and rRNA cytosine-C5-methylases [Pelotomaculum
           thermopropionicum SI]
          Length = 456

 Score = 92.9 bits (230), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 27/140 (19%), Positives = 55/140 (39%), Gaps = 13/140 (9%)

Query: 19  ARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMD 78
           AR  A++               + E   Y   A  ++  +     +D  +   + +G + 
Sbjct: 9   ARELALK-----------VVNAVEEEGAYANLALNQVLEKHRPGKLDRAFATELAYGTLR 57

Query: 79  RKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFF 138
               +D ++   + +    S     + +ILR GV +L+    VP   + +E   +A  + 
Sbjct: 58  SLNTLDWVLEQFIKQ--PLSSQSRTVLNILRLGVYQLMFMDRVPPSAVCNEGAELARKYG 115

Query: 139 YGDEPKFINAVLDKVSRKEE 158
           +    KF+N VL  +SR+  
Sbjct: 116 HAGTVKFVNGVLRNISRRLN 135


>gi|188994695|ref|YP_001928947.1| probable nitrogen utilization substance protein [Porphyromonas
           gingivalis ATCC 33277]
 gi|188594375|dbj|BAG33350.1| probable nitrogen utilization substance protein [Porphyromonas
           gingivalis ATCC 33277]
          Length = 348

 Score = 92.5 bits (229), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 30/139 (21%), Positives = 55/139 (39%), Gaps = 7/139 (5%)

Query: 28  YQIDIIGCSTTEIISEYE---TYRFCADTELDV---ESVYLHVDLEWFRVIIHGVMDRKQ 81
           YQ      +  EI+ E+      R   DT+       +     D  +   ++   +   Q
Sbjct: 206 YQTIRQENAPIEIVKEFVLKTIRRIEQDTDPSAILLPAYKEKDDAVFGTTLLRNAIINGQ 265

Query: 82  HIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGD 141
               +I   L   W   R+  +   I++  + EL+   ++PV V I+EY+ ++  F    
Sbjct: 266 EYRHIIRENLI-NWEVDRIADMDMLIMQLAITELLHFPNIPVLVTINEYIDLSKLFSTPK 324

Query: 142 EPKFINAVLDKVSRKEEIK 160
              F+N +LD V +    K
Sbjct: 325 SGTFVNGLLDAVVKSLREK 343


>gi|197294848|ref|YP_001799389.1| Transcription termination factor [Candidatus Phytoplasma
           australiense]
 gi|171854175|emb|CAM12169.1| Transcription termination factor [Candidatus Phytoplasma
           australiense]
          Length = 138

 Score = 92.5 bits (229), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 38/161 (23%), Positives = 65/161 (40%), Gaps = 32/161 (19%)

Query: 5   DNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHV 64
           +N K  K S    + R+  ++ LYQ D    +  +I  E     F               
Sbjct: 2   NNHKRFKKS---RLLRIKMMKLLYQYDFYSNNLKKISQEKLQSDFEK------------- 45

Query: 65  DLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVE 124
                      ++ +   ID +I + L   +  +RL+ +  +I+R    EL+E    P  
Sbjct: 46  -----------IIMKLPFIDEIIINNLY-NYKLNRLNKVDKAIIRLATFELLENK-TPYA 92

Query: 125 VIISEYVCIAHDFF---YGDEPKFINAVLDKVSRKEEIKRS 162
           +II E V +   F       + KF N +LDK+ ++ EIK +
Sbjct: 93  LIIDEAVELTKQFCNLHNEKQHKFNNKLLDKIHKQLEIKET 133


>gi|327405408|ref|YP_004346246.1| NusB antitermination factor [Fluviicola taffensis DSM 16823]
 gi|327320916|gb|AEA45408.1| NusB antitermination factor [Fluviicola taffensis DSM 16823]
          Length = 315

 Score = 92.5 bits (229), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 29/143 (20%), Positives = 58/143 (40%), Gaps = 20/143 (13%)

Query: 29  QIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVM----DRKQHID 84
           Q+ I      E   ++       D E + E         + R ++   +    +    ID
Sbjct: 182 QMTIKSIKAMEEGQKFVVMPLYKDKEDEQE---------FLRGLLRKTISMDSENLLLID 232

Query: 85  LLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPK 144
                 LT+ W   R+  +   +L+  + EL   +++P +V ++EY+ I+  +       
Sbjct: 233 E-----LTDNWELERIAKMDILLLKMAITELQVFNNIPKKVTLNEYIEISKFYSTPKSHG 287

Query: 145 FINAVLDKVSRKEEIKRSGCVSA 167
           FIN +LDK    + + + G +S 
Sbjct: 288 FINGILDKAV--DRLVKDGKISK 308


>gi|333031441|ref|ZP_08459502.1| NusB antitermination factor [Bacteroides coprosuis DSM 18011]
 gi|332742038|gb|EGJ72520.1| NusB antitermination factor [Bacteroides coprosuis DSM 18011]
          Length = 308

 Score = 92.1 bits (228), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 25/135 (18%), Positives = 64/135 (47%), Gaps = 5/135 (3%)

Query: 31  DIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSC 90
           +I+     + I +++  +  +D  L  E      D E+   ++   ++ +++   LI + 
Sbjct: 176 EIVDTFIIKTIKKFKAEK-GSDQPLLPE-YKDDEDQEFAVRLLRQAIENEEYYRSLIGTH 233

Query: 91  LTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVL 150
            T+ W   R+ ++   +++  + E++   ++P+ V  +EY+ +A  +       FIN  L
Sbjct: 234 -TKNWELDRIALMDVVLMQCALAEVLSFPNIPLSVTFNEYLDLAKLYSTHKSGGFINGTL 292

Query: 151 DKVSRKEEIKRSGCV 165
           D +    ++K+ G +
Sbjct: 293 DSII--NQLKKEGKL 305


>gi|189347315|ref|YP_001943844.1| sun protein [Chlorobium limicola DSM 245]
 gi|189341462|gb|ACD90865.1| sun protein [Chlorobium limicola DSM 245]
          Length = 451

 Score = 92.1 bits (228), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 30/154 (19%), Positives = 62/154 (40%), Gaps = 16/154 (10%)

Query: 18  IARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVM 77
            +R  A++ L  I+     +   + E  ++           +     D      +++GV+
Sbjct: 8   TSRELALKVLQNIESGEKKSGTALHEQLSH-----------TSLNQNDRALATELVNGVL 56

Query: 78  DRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDF 137
            R+  +D  I         + +   +L +ILR G  +LI    +P    ++E V +A  +
Sbjct: 57  RRRLTLDTFIGRYYHH--RYEKAAPVLKNILRIGAYQLIYLDRIPHWAAVNESVSLARRY 114

Query: 138 FYGDEPKFINAVLDKVSRK---EEIKRSGCVSAI 168
                 K +NAVL  ++ +    ++  SG +  I
Sbjct: 115 KGEHMAKLVNAVLRNITPETISADLDPSGKMKEI 148


>gi|332884936|gb|EGK05191.1| hypothetical protein HMPREF9456_03104 [Dysgonomonas mossii DSM
           22836]
          Length = 308

 Score = 92.1 bits (228), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 25/114 (21%), Positives = 53/114 (46%), Gaps = 2/114 (1%)

Query: 40  IISEYETYRFCADTELDVESVY-LHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFS 98
           ++   + +     TE ++  ++    D E+   ++   +   +    LI    T+ W   
Sbjct: 182 VLKTIKRFDENKGTEQELLPMFKDETDKEFAVKLLRESLFNGKEYRELIDKY-TKNWESE 240

Query: 99  RLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDK 152
           R+ ++   I++  + E+IE  S+P+ V ++EY+ IA  +       FIN +LD 
Sbjct: 241 RIALMDMVIMQIAIAEIIEFPSIPISVSLNEYIDIAKSYSTIKSASFINGILDA 294


>gi|291518519|emb|CBK73740.1| ribosomal RNA small subunit methyltransferase RsmB [Butyrivibrio
           fibrisolvens 16/4]
          Length = 423

 Score = 92.1 bits (228), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 28/127 (22%), Positives = 57/127 (44%), Gaps = 2/127 (1%)

Query: 31  DIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSC 90
           +I   +  EI+   +         LD        +  +   +++G ++RK  +D +I S 
Sbjct: 8   EIAMETVIEILENGQFSHIYLKAVLDKYGYLEKNERAFLNRLVNGTVERKLQLDYIIDSF 67

Query: 91  LTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVL 150
              K    ++  ++ +++R GV E+    +VP     +EYV +A    +     F+N VL
Sbjct: 68  SKTK--VKKMKPLIRTVMRLGVYEIYYMDAVPDSATCNEYVKLAKKRGFAGLSGFVNGVL 125

Query: 151 DKVSRKE 157
             +SR++
Sbjct: 126 RNISREK 132


>gi|313206914|ref|YP_004046091.1| nusb antitermination factor [Riemerella anatipestifer DSM 15868]
 gi|312446230|gb|ADQ82585.1| NusB antitermination factor [Riemerella anatipestifer DSM 15868]
 gi|325335649|gb|ADZ11923.1| NusB [Riemerella anatipestifer RA-GD]
          Length = 301

 Score = 91.7 bits (227), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 26/114 (22%), Positives = 52/114 (45%), Gaps = 3/114 (2%)

Query: 48  RFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSI 107
           R    +   ++ +    D  + + ++   ++  +  ++ +   L + W   R+ ++   I
Sbjct: 190 REGEPSHTLIKIIKDEEDRSFAQKLLQYSLNHWEDTEVKLKERL-KNWELDRVSLMDRVI 248

Query: 108 LRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKR 161
           L A + EL      P +VII+EY+ I+  F       FIN +L K +  E+I R
Sbjct: 249 LIAAITELDHFPLTPSKVIINEYIEISKAFSTDKSQVFINGLLGKYA--EDINR 300


>gi|313905220|ref|ZP_07838588.1| sun protein [Eubacterium cellulosolvens 6]
 gi|313469973|gb|EFR65307.1| sun protein [Eubacterium cellulosolvens 6]
          Length = 437

 Score = 91.7 bits (227), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 34/145 (23%), Positives = 57/145 (39%), Gaps = 16/145 (11%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           R   R  AV+ L            I  E           LD  +     D  ++  +  G
Sbjct: 4   RVNVRELAVETL----------LAIQKENRQSHLLIRDVLDQYAWLPDRDRAFYVRLTEG 53

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA- 134
            ++ +  +D +I+S    K   +R+  ++  ILR  V +L    SVP    ++E V +A 
Sbjct: 54  TLEYRLQLDYIINSY--SKTRTTRMKPMIREILRVAVYQLRYMDSVPDSAAVNEAVRLAV 111

Query: 135 -HDFFYGDEPKFINAVLDKVSRKEE 158
              F       F+N VL  ++R+ E
Sbjct: 112 RRGFSGLK--GFVNGVLRSIAREPE 134


>gi|325279484|ref|YP_004252026.1| NusB antitermination factor [Odoribacter splanchnicus DSM 20712]
 gi|324311293|gb|ADY31846.1| NusB antitermination factor [Odoribacter splanchnicus DSM 20712]
          Length = 320

 Score = 91.7 bits (227), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 24/110 (21%), Positives = 43/110 (39%), Gaps = 1/110 (0%)

Query: 43  EYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDM 102
            +   +   + ++         D E+ R ++            +I    T  W   R+  
Sbjct: 187 WHLQEKMREEDDILYPIYKKDEDFEYARTLMRKAFYEYNANMEIIDKF-TYNWELDRISE 245

Query: 103 ILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDK 152
           +   I+   + EL    S+PV+V + EY+ I+  +       FIN VLDK
Sbjct: 246 MDKLIMSCAISELKHFPSIPVKVTLDEYIEISKTYSSPKSGAFINGVLDK 295


>gi|320530184|ref|ZP_08031254.1| ribosomal RNA small subunit methyltransferase B [Selenomonas
           artemidis F0399]
 gi|320137617|gb|EFW29529.1| ribosomal RNA small subunit methyltransferase B [Selenomonas
           artemidis F0399]
          Length = 451

 Score = 91.7 bits (227), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 28/153 (18%), Positives = 56/153 (36%), Gaps = 19/153 (12%)

Query: 12  LSHRRGIA------RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVD 65
           ++  R  A      R  A+Q L  +++        ++     R          +     D
Sbjct: 1   MTENRYAADKIDPVRELAMQVL--MEVHRDGAYANVALVRAMR---------AAQLTDRD 49

Query: 66  LEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEV 125
             +   +++G +     +D +I+  L +    +R+   +  ILR G+ ++     VP   
Sbjct: 50  RRFLTELVYGTVKAGDTLDDMIAKYLRDGK--ARIKPQIREILRLGIYQIFFMDKVPASA 107

Query: 126 IISEYVCIAHDFFYGDEPKFINAVLDKVSRKEE 158
             +  V +A          F+NAVL    R+ E
Sbjct: 108 ACNTAVELAKKHGKRGADSFVNAVLRAAVREPE 140


>gi|295091953|emb|CBK78060.1| ribosomal RNA small subunit methyltransferase RsmB [Clostridium cf.
           saccharolyticum K10]
          Length = 472

 Score = 91.3 bits (226), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 34/170 (20%), Positives = 61/170 (35%), Gaps = 26/170 (15%)

Query: 1   MTIQDNKKDLKLSHRRGI----------ARLAAVQALYQIDIIGCSTTEIISEYETYRFC 50
           MT   ++K      R G           AR  A   L           E++ + +     
Sbjct: 1   MTRPGSRKPENGKQREGKKAGSLQRMPDAREIAADIL----------MEVLEKKQYSHVV 50

Query: 51  ADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRA 110
               L         +  + + ++ G ++R   ID +I S  +      ++   + +ILR 
Sbjct: 51  LLNALKKYQYLEKQERSFIKRVVDGTLERLMQIDFIIESFSST--PLRKMKPTVRTILRM 108

Query: 111 GVLELIECHSVPVEVIISEYVCIA--HDFFYGDEPKFINAVLDKVSRKEE 158
           GV ++     VP     +E V +     F       F+N VL  ++RK+E
Sbjct: 109 GVYQICYMDRVPDSAACNEAVKLTVKRGFSGLK--GFVNGVLRNIARKKE 156


>gi|313888508|ref|ZP_07822175.1| ribosomal RNA small subunit methyltransferase B [Peptoniphilus
           harei ACS-146-V-Sch2b]
 gi|312845537|gb|EFR32931.1| ribosomal RNA small subunit methyltransferase B [Peptoniphilus
           harei ACS-146-V-Sch2b]
          Length = 430

 Score = 91.3 bits (226), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 30/141 (21%), Positives = 59/141 (41%), Gaps = 14/141 (9%)

Query: 20  RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79
           R  A+Q +           +++  Y+        E+   S     D  + + I  GV+  
Sbjct: 5   REKALQII----------NDVL--YKGTFLEESLEILKASNIDERDFAFIKEITTGVVRN 52

Query: 80  KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139
           K ++D +I      K  F+R+  I+ SIL   + ++     VP   I+ E V +A  +  
Sbjct: 53  KTYLDYVIREN--SKVRFNRIHKIILSILEMAIYQMYFLDKVPDYSIVDESVNLAKIYGN 110

Query: 140 GDEPKFINAVLDKVSRKEEIK 160
                F N +L  +S+++ ++
Sbjct: 111 KGSISFTNGILRSISKEKHLQ 131


>gi|282879285|ref|ZP_06288030.1| transcription antitermination factor NusB [Prevotella buccalis ATCC
           35310]
 gi|281298567|gb|EFA90991.1| transcription antitermination factor NusB [Prevotella buccalis ATCC
           35310]
          Length = 333

 Score = 91.3 bits (226), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 28/125 (22%), Positives = 54/125 (43%), Gaps = 3/125 (2%)

Query: 31  DIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSC 90
           +++     + I  ++     AD E+  E      D ++   +    +       L +S  
Sbjct: 175 EVVDTFVLKTIRRFDQANK-ADQEILPE-YKDEEDRDFATKLFRATILNADTYQLYMSET 232

Query: 91  LTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVL 150
            +  W FSRL  +   I++  + E++   ++PV V I EYV  A  +       +IN +L
Sbjct: 233 -SRNWDFSRLAYMDVVIMQIAIAEMLTFPNIPVSVTIYEYVNQAKRYSTTKSGGYINGML 291

Query: 151 DKVSR 155
           D ++R
Sbjct: 292 DSIAR 296


>gi|283797834|ref|ZP_06346987.1| ribosomal RNA small subunit methyltransferase B [Clostridium sp.
           M62/1]
 gi|291074522|gb|EFE11886.1| ribosomal RNA small subunit methyltransferase B [Clostridium sp.
           M62/1]
          Length = 472

 Score = 90.9 bits (225), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 34/170 (20%), Positives = 61/170 (35%), Gaps = 26/170 (15%)

Query: 1   MTIQDNKKDLKLSHRRGI----------ARLAAVQALYQIDIIGCSTTEIISEYETYRFC 50
           MT   ++K      R G           AR  A   L           E++ + +     
Sbjct: 1   MTRPGSRKPENGKQREGKKAGSPQRMPDAREIAADIL----------MEVLEKKQYSHVV 50

Query: 51  ADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRA 110
               L         +  + + ++ G ++R   ID +I S  +      ++   + +ILR 
Sbjct: 51  LLNALKKYQYLEKQERSFIKRVVDGTLERLMQIDFIIESFSST--PLRKMKPTVRTILRM 108

Query: 111 GVLELIECHSVPVEVIISEYVCIA--HDFFYGDEPKFINAVLDKVSRKEE 158
           GV ++     VP     +E V +     F       F+N VL  ++RK+E
Sbjct: 109 GVYQICYMDRVPDSAACNEAVKLTVKRGFSGLK--GFVNGVLRNIARKKE 156


>gi|160933495|ref|ZP_02080883.1| hypothetical protein CLOLEP_02341 [Clostridium leptum DSM 753]
 gi|156867372|gb|EDO60744.1| hypothetical protein CLOLEP_02341 [Clostridium leptum DSM 753]
          Length = 446

 Score = 90.9 bits (225), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 31/140 (22%), Positives = 53/140 (37%), Gaps = 13/140 (9%)

Query: 17  GIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGV 76
             ARL A++AL    +        + E + Y           S     D  +   + +GV
Sbjct: 5   KNARLTALKAL----LR-------VEEGKGYSNLVLDHGLAASGLDGRDAAFASALFYGV 53

Query: 77  MDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHD 136
           ++R+  +D  IS     K   S++   +  ILR G  +L+    VP    ++E V +   
Sbjct: 54  LERRITLDYQISRY--SKMPLSQMAAPVREILRLGFYQLLYMDKVPQSAAVNESVKLTRA 111

Query: 137 FFYGDEPKFINAVLDKVSRK 156
                   F+N +L    R 
Sbjct: 112 VKKDKASGFVNGILRSFIRD 131


>gi|317056478|ref|YP_004104945.1| sun protein [Ruminococcus albus 7]
 gi|315448747|gb|ADU22311.1| sun protein [Ruminococcus albus 7]
          Length = 431

 Score = 90.9 bits (225), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 31/125 (24%), Positives = 59/125 (47%), Gaps = 3/125 (2%)

Query: 41  ISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRL 100
           + E  +Y      E    S +   D ++   + +GV++R+  +D +I   L++    S+L
Sbjct: 15  LDENNSYSNILLDESLSRSDFDKRDKKFIAALFYGVIERRLTLDAIIVD-LSKN-PKSKL 72

Query: 101 DMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDK-VSRKEEI 159
           +  L +ILR G+ +L    SVP    + E V +A        P F N +L + + R +E+
Sbjct: 73  NYTLRNILRCGLYQLKYMDSVPDNAAVDESVELAKKCRNPAAPGFTNGLLREFIRRSKEL 132

Query: 160 KRSGC 164
            ++  
Sbjct: 133 PKTNS 137


>gi|152976231|ref|YP_001375748.1| sun protein [Bacillus cereus subsp. cytotoxis NVH 391-98]
 gi|152024983|gb|ABS22753.1| sun protein [Bacillus cytotoxicus NVH 391-98]
          Length = 444

 Score = 90.9 bits (225), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 29/141 (20%), Positives = 55/141 (39%), Gaps = 16/141 (11%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           R   R  A+  L Q++  G  +  ++             L  +S     D+     I++G
Sbjct: 2   RQNVRELALDGLMQVEKSGAYSNLLL-----------NHLIEKSTIHKKDIGLLTEIVYG 50

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
            + R+  +D  +   L +K     +D  +  +LR  + +++    VP    I E V IA 
Sbjct: 51  TIQRRDTLDYYLQPFLRKK-----VDAWVRVLLRLSLYQMLYLDRVPERAAIHEAVEIAK 105

Query: 136 DFFYGDEPKFINAVLDKVSRK 156
              +      +N VL  + R+
Sbjct: 106 RRGHKGIAGMVNGVLRSIQRE 126


>gi|258647540|ref|ZP_05735009.1| NusB family protein [Prevotella tannerae ATCC 51259]
 gi|260852324|gb|EEX72193.1| NusB family protein [Prevotella tannerae ATCC 51259]
          Length = 309

 Score = 90.9 bits (225), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 21/110 (19%), Positives = 51/110 (46%), Gaps = 1/110 (0%)

Query: 52  DTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAG 111
           + +  +       D ++   +    ++R   +  LI +  ++ W F RL  +   I++  
Sbjct: 197 EKQEILPEYDTEDDHQFALELFQTTIERGDEMRDLIRNN-SKNWEFGRLAFMDVIIMQIA 255

Query: 112 VLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKR 161
           + E++   ++P+ V  +EY+ IA  +       +IN +LD V +  + ++
Sbjct: 256 LTEMLTFPTIPLNVTFNEYLDIAKIYSTPRSSSYINGLLDHVVKYLQAEK 305


>gi|332668432|ref|YP_004451220.1| NusB antitermination factor [Haliscomenobacter hydrossis DSM 1100]
 gi|332337246|gb|AEE54347.1| NusB antitermination factor [Haliscomenobacter hydrossis DSM 1100]
          Length = 312

 Score = 90.5 bits (224), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 22/112 (19%), Positives = 54/112 (48%), Gaps = 3/112 (2%)

Query: 56  DVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLEL 115
           +         +++  +++  V    + +  +I   L   W   R+ +I   +++  ++EL
Sbjct: 196 EAYKPNAEATVDFGELLLRKVYHEDEALLKVIEPTL-RNWDVERVAIIDMILIKMALVEL 254

Query: 116 IECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRSGCVSA 167
           +   S+P +V ++E+V IA ++       FIN +LD++ ++  +   G +S 
Sbjct: 255 MTFKSIPSKVTLNEFVEIAKNYSTDKSKDFINGILDRLLKQ--LLEEGKISK 304


>gi|113474580|ref|YP_720641.1| transcription antitermination protein NusB [Trichodesmium
           erythraeum IMS101]
 gi|119390846|sp|Q118A6|NUSB_TRIEI RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|110165628|gb|ABG50168.1| NusB antitermination factor [Trichodesmium erythraeum IMS101]
          Length = 207

 Score = 90.5 bits (224), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 26/88 (29%), Positives = 41/88 (46%), Gaps = 2/88 (2%)

Query: 66  LEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEV 125
             +   ++  V   ++ +D L+   +   W   RL  I   ILR  V E++    +  +V
Sbjct: 115 RSYAMEVLTKVNGNRKEVDKLLQESIV-DWQIERLPRIDLDILRIAVAEMMFIG-IQKQV 172

Query: 126 IISEYVCIAHDFFYGDEPKFINAVLDKV 153
            ISE V +A  +   D  KFIN VL +V
Sbjct: 173 AISEAVELAKRYSGEDGYKFINGVLRRV 200


>gi|304316972|ref|YP_003852117.1| sun protein [Thermoanaerobacterium thermosaccharolyticum DSM 571]
 gi|302778474|gb|ADL69033.1| sun protein [Thermoanaerobacterium thermosaccharolyticum DSM 571]
          Length = 447

 Score = 90.5 bits (224), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 33/137 (24%), Positives = 59/137 (43%), Gaps = 13/137 (9%)

Query: 20  RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79
           R  A + LY+I +    +  ++++Y       D E             + + I+ G ++R
Sbjct: 4   RNIAFKILYEILVKKGYSNIVLNKYLNNDGIEDVE-----------KSFIKEIVFGTIER 52

Query: 80  KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139
           K  +D +I  C T+     ++D  +  IL  G+ +L+    VP    I+E V +  +   
Sbjct: 53  KYTLDRIIDYCSTK--DIKKIDNKVLIILEMGLFQLMYMDKVPDYAAINESVNLTKEHVG 110

Query: 140 GDEPKFINAVLDKVSRK 156
               KF+NAVL    R 
Sbjct: 111 KYASKFVNAVLRSYLRN 127


>gi|253575778|ref|ZP_04853113.1| ribosomal RNA small subunit methyltransferase B [Paenibacillus sp.
           oral taxon 786 str. D14]
 gi|251844821|gb|EES72834.1| ribosomal RNA small subunit methyltransferase B [Paenibacillus sp.
           oral taxon 786 str. D14]
          Length = 506

 Score = 90.2 bits (223), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 28/143 (19%), Positives = 53/143 (37%), Gaps = 13/143 (9%)

Query: 19  ARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMD 78
           AR  A+Q L             + +   Y          +S     D      +++G + 
Sbjct: 55  ARSVALQVL-----------TAVEQEGAYSNLLLNGALQKSGLTGPDAGLATELVYGTIQ 103

Query: 79  RKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFF 138
           R   ID  +   +T+    ++L   + ++LR    +L     +P    ++E V +A    
Sbjct: 104 RLNTIDYFLEQFVTKG--LAKLAPWVRNLLRLSFYQLQYLDRIPPHAAVNEAVNLAKRKG 161

Query: 139 YGDEPKFINAVLDKVSRKEEIKR 161
           +      +N VL  V R++E  R
Sbjct: 162 HQGISGMVNGVLRNVLRRKEELR 184


>gi|283769473|ref|ZP_06342369.1| transcription antitermination factor NusB [Bulleidia extructa
           W1219]
 gi|283103741|gb|EFC05127.1| transcription antitermination factor NusB [Bulleidia extructa
           W1219]
          Length = 124

 Score = 90.2 bits (223), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 35/138 (25%), Positives = 51/138 (36%), Gaps = 16/138 (11%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           R + R  AV +LY    +      I+              D        D  +F  ++  
Sbjct: 3   RSVQREKAVLSLYAYLSLPRDIHSIME-------------DSFGSLDKAD-PYFIRVVEN 48

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
             +  Q     I+  L E W+F RL  I  +IL  G  E      V   +II E V +A 
Sbjct: 49  AQEHIQEYTNYINQVL-ENWTFDRLGTIEKAILLIGCAEFS-LKEVAAVIIIDEAVELAK 106

Query: 136 DFFYGDEPKFINAVLDKV 153
            +   D  + IN VLD +
Sbjct: 107 TYGEADSYRLINNVLDVI 124


>gi|312898700|ref|ZP_07758090.1| ribosomal RNA small subunit methyltransferase B [Megasphaera
           micronuciformis F0359]
 gi|310620619|gb|EFQ04189.1| ribosomal RNA small subunit methyltransferase B [Megasphaera
           micronuciformis F0359]
          Length = 441

 Score = 89.8 bits (222), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 24/101 (23%), Positives = 48/101 (47%), Gaps = 2/101 (1%)

Query: 58  ESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIE 117
           +  +   D  ++  +++G +    ++D +I    + K   + LD +  ++LR G+ +L  
Sbjct: 31  KEKFTDRDRRFYTELVYGTLRSLNYVDYIIGILSSRKK--NSLDPVCLAVLRMGLYQLFF 88

Query: 118 CHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEE 158
              VP     +E V +A  F      KF+NA+L    R++E
Sbjct: 89  MDKVPPSAACNEAVKLARRFGNEGMAKFVNALLRNSLRQKE 129


>gi|309806415|ref|ZP_07700424.1| putative transcription antitermination protein NusB [Lactobacillus
           iners LactinV 03V1-b]
 gi|308167197|gb|EFO69367.1| putative transcription antitermination protein NusB [Lactobacillus
           iners LactinV 03V1-b]
          Length = 100

 Score = 89.8 bits (222), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 22/87 (25%), Positives = 39/87 (44%)

Query: 67  EWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVI 126
           ++   I+ GVM  K  ID  ++  L + W+  RL+ I   IL  G+ E+     +     
Sbjct: 11  DYAYEILQGVMKEKSSIDANLTKYLKKGWTLERLNKIDLVILEVGLFEIQNSKVIKPVSA 70

Query: 127 ISEYVCIAHDFFYGDEPKFINAVLDKV 153
           ++E + +  +F       FIN +L   
Sbjct: 71  LNEALNMCDEFSSAKSKGFINGILANF 97


>gi|167768546|ref|ZP_02440599.1| hypothetical protein CLOSS21_03105 [Clostridium sp. SS2/1]
 gi|167710070|gb|EDS20649.1| hypothetical protein CLOSS21_03105 [Clostridium sp. SS2/1]
 gi|291560508|emb|CBL39308.1| ribosomal RNA small subunit methyltransferase RsmB
           [butyrate-producing bacterium SSC/2]
          Length = 447

 Score = 89.4 bits (221), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 27/139 (19%), Positives = 55/139 (39%), Gaps = 12/139 (8%)

Query: 20  RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79
           R  A+  L           ++  + E         L+        D  +F  ++ G ++R
Sbjct: 5   RECALDVL----------IKVDKKEELSHIAISNVLEKYQFSEKRDRAFFTRLVEGTLER 54

Query: 80  KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139
           +  ID +       K    +   ++ ++LR G+ +++    VP     +E V +A    +
Sbjct: 55  QITIDYVADQFSKTK--IRKCKPLIRALLRMGIYQILYMDQVPDSAACNEAVKLAKKRGF 112

Query: 140 GDEPKFINAVLDKVSRKEE 158
                F+N VL  +SRK++
Sbjct: 113 SRLSGFVNGVLRNISRKKD 131


>gi|317498698|ref|ZP_07956990.1| ribosomal RNA small subunit methyltransferase B [Lachnospiraceae
           bacterium 5_1_63FAA]
 gi|316894040|gb|EFV16230.1| ribosomal RNA small subunit methyltransferase B [Lachnospiraceae
           bacterium 5_1_63FAA]
          Length = 447

 Score = 89.4 bits (221), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 27/139 (19%), Positives = 55/139 (39%), Gaps = 12/139 (8%)

Query: 20  RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79
           R  A+  L           ++  + E         L+        D  +F  ++ G ++R
Sbjct: 5   RECALDVL----------IKVDKKEELSHIAISNVLEKYQFSEKRDRAFFTRLVEGTLER 54

Query: 80  KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139
           +  ID +       K    +   ++ ++LR G+ +++    VP     +E V +A    +
Sbjct: 55  QITIDYVADQFSKTK--IRKCKPLIRALLRMGIYQILYMDQVPDSAACNEAVKLAKKRGF 112

Query: 140 GDEPKFINAVLDKVSRKEE 158
                F+N VL  +SRK++
Sbjct: 113 SRLSGFVNGVLRNISRKKD 131


>gi|268611642|ref|ZP_06145369.1| sun protein [Ruminococcus flavefaciens FD-1]
          Length = 443

 Score = 89.4 bits (221), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 28/101 (27%), Positives = 50/101 (49%), Gaps = 2/101 (1%)

Query: 58  ESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIE 117
            S     D  +   + +GV++RK  +D +++   +     S+LD I+ +ILR G+ +L+ 
Sbjct: 32  NSDLSPQDKRFCTALYYGVIERKITLDHILTGLSSR--PLSKLDSIIITILRCGIYQLLY 89

Query: 118 CHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEE 158
             +VP    ++E V +A  F        +NAVL    RK +
Sbjct: 90  MENVPDNAAVNESVKLAKKFGKTSASGMVNAVLRNFIRKGK 130


>gi|257066525|ref|YP_003152781.1| NusB antitermination factor [Anaerococcus prevotii DSM 20548]
 gi|256798405|gb|ACV29060.1| NusB antitermination factor [Anaerococcus prevotii DSM 20548]
          Length = 127

 Score = 89.4 bits (221), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 34/144 (23%), Positives = 58/144 (40%), Gaps = 21/144 (14%)

Query: 15  RRGIARLAAVQALYQIDIIG-CSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVII 73
            R   R    + +YQ  I       + + E +                   D ++ R  I
Sbjct: 2   NRVEQREWVFKLIYQDSISKIEDIDKALEELDL-----------------TDEDFVRKSI 44

Query: 74  HGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCI 133
              ++    ID  ++S L  K    RL  +L SIL   + E+     +PV V I+E V +
Sbjct: 45  SSFLNNFSSIDEKLTSNLDSKRK--RLSKVLRSILYLSINEM-YFMDIPVSVSINEAVNL 101

Query: 134 AHDFFYGDEPKFINAVLDKVSRKE 157
           A  +   D+ K +N++L  + RK+
Sbjct: 102 AKKYSDEDDYKLVNSILGSIVRKD 125


>gi|298373502|ref|ZP_06983491.1| NusB family protein [Bacteroidetes oral taxon 274 str. F0058]
 gi|298274554|gb|EFI16106.1| NusB family protein [Bacteroidetes oral taxon 274 str. F0058]
          Length = 307

 Score = 89.4 bits (221), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 19/94 (20%), Positives = 45/94 (47%), Gaps = 1/94 (1%)

Query: 63  HVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVP 122
             + E+   + H    +    + +IS  +  KW   R+  +   +++  + E  E   +P
Sbjct: 204 ENEKEFVVKLSHTAFLKGDEYEQMISK-IVPKWDVERITKMDMVLMKMAIAEFKEFPLIP 262

Query: 123 VEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRK 156
           +++ I+EY+ I+  +       FIN +LD ++++
Sbjct: 263 IDITINEYIEISKFYSTSKSYIFINGILDTIAKE 296


>gi|323141164|ref|ZP_08076065.1| ribosomal RNA small subunit methyltransferase B
           [Phascolarctobacterium sp. YIT 12067]
 gi|322414307|gb|EFY05125.1| ribosomal RNA small subunit methyltransferase B
           [Phascolarctobacterium sp. YIT 12067]
          Length = 453

 Score = 89.4 bits (221), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 24/117 (20%), Positives = 49/117 (41%), Gaps = 2/117 (1%)

Query: 43  EYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDM 102
           E   Y   A  +    S    +D      +++G +     +D  ++ C++      ++  
Sbjct: 26  EDGAYTNIALNQYLRGSRLSDLDRRLATELVYGTVKASGTLDWYLAQCVSR--PLDKVAG 83

Query: 103 ILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEI 159
            + +ILR    +L+    +P    ++E V +A    +    KF+N VL  + RK+E 
Sbjct: 84  DILAILRISTYQLLYMTRIPASAAVNEAVKLARSVSHEGSAKFVNGVLRGLLRKQEA 140


>gi|256820792|ref|YP_003142071.1| N utilization substance protein B [Capnocytophaga ochracea DSM
           7271]
 gi|256582375|gb|ACU93510.1| N utilization substance protein B [Capnocytophaga ochracea DSM
           7271]
          Length = 302

 Score = 89.0 bits (220), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 22/100 (22%), Positives = 49/100 (49%), Gaps = 1/100 (1%)

Query: 63  HVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVP 122
             + ++   ++   +      +  I + +T  W   R+ +I   +L+  V E++   S+P
Sbjct: 195 EEEKDFLTGLLKKAVLNDSKWEDEIITRMT-GWEKDRVAVIDSILLKMAVCEMLSFPSIP 253

Query: 123 VEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRS 162
           V+V ++EY+ +A ++       FIN V+  V ++ E K+ 
Sbjct: 254 VKVTLNEYLELAKEYSTTKSSAFINGVMKNVHKELEEKQQ 293


>gi|332829206|gb|EGK01870.1| hypothetical protein HMPREF9455_02018 [Dysgonomonas gadei ATCC
           BAA-286]
          Length = 308

 Score = 89.0 bits (220), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 28/123 (22%), Positives = 54/123 (43%), Gaps = 3/123 (2%)

Query: 30  IDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISS 89
           I+II     + I  +E  +  A   L +       D E+   ++   +   +    LI  
Sbjct: 175 IEIIESFVLKTIKRFEENKGAAQELLPM--FKDDSDREFAVKLLRESLWNGKEYRELIDK 232

Query: 90  CLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAV 149
             T+ W   R+ ++   I++  + E++   S+P+ V ++EY+ IA  +       FIN +
Sbjct: 233 Y-TKNWESERIALMDMVIMQIAIGEIVSFPSIPISVTLNEYIDIAKSYSTAKSASFINGI 291

Query: 150 LDK 152
           LD 
Sbjct: 292 LDA 294


>gi|172057934|ref|YP_001814394.1| sun protein [Exiguobacterium sibiricum 255-15]
 gi|171990455|gb|ACB61377.1| sun protein [Exiguobacterium sibiricum 255-15]
          Length = 446

 Score = 89.0 bits (220), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 27/141 (19%), Positives = 61/141 (43%), Gaps = 5/141 (3%)

Query: 30  IDIIGCSTTEIIS--EYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLI 87
           +++   + T ++   +   +   +  ++  +      D+  +  +++G + R+  +D ++
Sbjct: 1   MNVRDAAVTTLLKIGQGGAFSTISVHQMLEKRAISKADVGLYTELVYGTLSRELTLDYIL 60

Query: 88  SSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFIN 147
              LT++    +LD  +  +LR  V +L     +P   +I+E V IA         K +N
Sbjct: 61  EPFLTKQ---KKLDPFMRPLLRMSVYQLFYLDRIPDHAVINEAVEIAKTRGKPHIAKVVN 117

Query: 148 AVLDKVSRKEEIKRSGCVSAI 168
            VL  V R  +   S   S +
Sbjct: 118 GVLRNVLRTGKPDFSAIPSTV 138


>gi|315223935|ref|ZP_07865780.1| antitermination factor [Capnocytophaga ochracea F0287]
 gi|314946107|gb|EFS98111.1| antitermination factor [Capnocytophaga ochracea F0287]
          Length = 313

 Score = 89.0 bits (220), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 23/100 (23%), Positives = 49/100 (49%), Gaps = 1/100 (1%)

Query: 63  HVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVP 122
             + ++   ++   +      +  I S +T  W   R+ +I   +L+  V E++   S+P
Sbjct: 206 EEEKDFLTGLLKKAVLNDSKWENEIISRMT-GWEKDRVAVIDSILLKMAVCEMLSFPSIP 264

Query: 123 VEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRS 162
           V+V ++EY+ +A ++       FIN V+  V ++ E K+ 
Sbjct: 265 VKVTLNEYLELAKEYSTTKSSAFINGVMKNVHKELEEKQQ 304


>gi|292670256|ref|ZP_06603682.1| RNA methyltransferase Sun [Selenomonas noxia ATCC 43541]
 gi|292648208|gb|EFF66180.1| RNA methyltransferase Sun [Selenomonas noxia ATCC 43541]
          Length = 448

 Score = 88.6 bits (219), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 24/139 (17%), Positives = 51/139 (36%), Gaps = 14/139 (10%)

Query: 20  RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79
           R  A+Q + ++   G      ++E               +     D  +   +++GV+  
Sbjct: 13  RELAMQTILRVHGAGAYANVALAETLR-----------AARPTERDRRFLTELVYGVVKA 61

Query: 80  KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139
              ID +I   ++      +    + ++LR G  ++     +PV    +  V +A  +  
Sbjct: 62  GDTIDYMIGKYVS---DLRKAQPAIRTLLRLGFYQIFFMDKIPVSAACNTAVELAKKYGR 118

Query: 140 GDEPKFINAVLDKVSRKEE 158
                F+N VL    R+ E
Sbjct: 119 RGAASFVNGVLRTALREPE 137


>gi|189499780|ref|YP_001959250.1| sun protein [Chlorobium phaeobacteroides BS1]
 gi|189495221|gb|ACE03769.1| sun protein [Chlorobium phaeobacteroides BS1]
          Length = 447

 Score = 88.6 bits (219), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 29/140 (20%), Positives = 55/140 (39%), Gaps = 13/140 (9%)

Query: 18  IARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVM 77
            AR  A+  L         T    SE   +R     + D        D      +++GV+
Sbjct: 2   KAREIALLTL-----QETDTQAKKSEQSLHRLLNRHKPD------KNDRSLATELVNGVL 50

Query: 78  DRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDF 137
             +  +D +IS  L+      +   +L +ILR G  +L+    +P    + E V +A  +
Sbjct: 51  RYRLRLDFIIS--LSYHHDLKKAAPVLRNILRLGAYQLLFLDKIPGWAAVDECVSLAVKY 108

Query: 138 FYGDEPKFINAVLDKVSRKE 157
                   +N VL +++ ++
Sbjct: 109 KGRHIAGIVNGVLRRIASEK 128


>gi|262277174|ref|ZP_06054967.1| N utilization substance protein B [alpha proteobacterium HIMB114]
 gi|262224277|gb|EEY74736.1| N utilization substance protein B [alpha proteobacterium HIMB114]
          Length = 127

 Score = 88.2 bits (218), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 22/90 (24%), Positives = 51/90 (56%)

Query: 66  LEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEV 125
           +   + +  G  ++++ ++ ++S  L+ +     LD +L  IL+  + EL  C  +P +V
Sbjct: 32  IRHIKKVFKGYFEQEEQLNEILSRSLSAEIKQKNLDSLLNIILKTSIYELKFCEKIPFKV 91

Query: 126 IISEYVCIAHDFFYGDEPKFINAVLDKVSR 155
           +I++Y+ +   F+  D+ + +N VLD V++
Sbjct: 92  VINQYLDVTAQFYGNDQKRLVNGVLDNVAK 121


>gi|57239039|ref|YP_180175.1| putative N utilization substance protein B-like protein [Ehrlichia
           ruminantium str. Welgevonden]
 gi|58578981|ref|YP_197193.1| putative N utilization substance protein B-like protein [Ehrlichia
           ruminantium str. Welgevonden]
 gi|58617039|ref|YP_196238.1| putative N utilization substance protein B-like protein [Ehrlichia
           ruminantium str. Gardel]
 gi|57161118|emb|CAH58029.1| hypothetical protein Erum3120 [Ehrlichia ruminantium str.
           Welgevonden]
 gi|58416651|emb|CAI27764.1| Putative N utilization substance protein B homolog [Ehrlichia
           ruminantium str. Gardel]
 gi|58417607|emb|CAI26811.1| Putative N utilization substance protein B homolog [Ehrlichia
           ruminantium str. Welgevonden]
          Length = 174

 Score = 88.2 bits (218), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 36/141 (25%), Positives = 66/141 (46%), Gaps = 6/141 (4%)

Query: 12  LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71
              ++   R  AVQ  Y +     +  ++ +  +        E+      +++D +    
Sbjct: 11  WQSKKTTTRFLAVQGTYAMTFNNYTINDLDNLIDYL-----YEMKEVLNLMYIDDQLLLK 65

Query: 72  IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
           II  ++    +I+  I+  L EKWS  R+++I  SI++  + EL+ C      +II+EYV
Sbjct: 66  IISTMLIAFNNINSNIAGFLNEKWSIDRINLISLSIIKTAICELM-CSKTDKIIIINEYV 124

Query: 132 CIAHDFFYGDEPKFINAVLDK 152
            IA       E  FINA+L++
Sbjct: 125 NIASQILERTEVNFINAILNQ 145


>gi|56751642|ref|YP_172343.1| transcription antitermination protein NusB [Synechococcus elongatus
           PCC 6301]
 gi|81301280|ref|YP_401488.1| transcription antitermination protein NusB [Synechococcus elongatus
           PCC 7942]
 gi|34222700|sp|Q8GIR7|NUSB_SYNE7 RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|81561842|sp|Q5N1J7|NUSB_SYNP6 RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|25019707|gb|AAN71793.1| unknown [Synechococcus elongatus PCC 7942]
 gi|56686601|dbj|BAD79823.1| N utilization substance protein B [Synechococcus elongatus PCC
           6301]
 gi|81170161|gb|ABB58501.1| transcription antitermination factor NusB [Synechococcus elongatus
           PCC 7942]
          Length = 213

 Score = 88.2 bits (218), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 28/122 (22%), Positives = 52/122 (42%), Gaps = 6/122 (4%)

Query: 37  TTEIISEYETYRFCADTELDVESVYLHVDLEWFRV----IIHGVMDRKQHIDLLISSCLT 92
             E+I   +         LD+       D E  R     ++  V + ++ ID  ++  + 
Sbjct: 80  LQEVIEMAQAAINRTGNALDLPEWVQLTDREEVRKFGGRLVLQVSNNRERIDRTLNDVMV 139

Query: 93  EKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDK 152
             W   R+  +   ILR    E++     P +V I+E V +A+ +   +  +FIN VL +
Sbjct: 140 -DWQLHRVPRLDQDILRLAAAEILF-LGTPEQVAINEAVELANRYSDEEGRRFINGVLRR 197

Query: 153 VS 154
           +S
Sbjct: 198 LS 199


>gi|139436934|ref|ZP_01771094.1| Hypothetical protein COLAER_00067 [Collinsella aerofaciens ATCC
           25986]
 gi|133776581|gb|EBA40401.1| Hypothetical protein COLAER_00067 [Collinsella aerofaciens ATCC
           25986]
          Length = 118

 Score = 88.2 bits (218), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 18/64 (28%), Positives = 31/64 (48%), Gaps = 2/64 (3%)

Query: 99  RLDMILCSILRAGVLELIE--CHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRK 156
           R+     ++LR  V E+       V   ++I+E V +A  +       F+N VL K++R 
Sbjct: 2   RMPGADRNLLRIAVYEMRFLTDEEVSDAIVINEAVELAKAYGTDQSASFVNGVLGKIARS 61

Query: 157 EEIK 160
           EE+ 
Sbjct: 62  EELP 65


>gi|167753516|ref|ZP_02425643.1| hypothetical protein ALIPUT_01791 [Alistipes putredinis DSM 17216]
 gi|167658141|gb|EDS02271.1| hypothetical protein ALIPUT_01791 [Alistipes putredinis DSM 17216]
          Length = 312

 Score = 88.2 bits (218), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 26/111 (23%), Positives = 46/111 (41%), Gaps = 5/111 (4%)

Query: 58  ESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIE 117
                  D E+ + +    +         I    T  W   R+  +   I+   + EL+ 
Sbjct: 200 PEFKSDEDAEFVKTLFEKTLINYNERLEYIEKF-TRNWDVERIVFMDNLIMATAITELVS 258

Query: 118 CHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVS----RKEEIKRSGC 164
             S+PV+V + EY+ IA  +       FIN VLDK+      + ++K++G 
Sbjct: 259 FPSIPVKVTLDEYIDIAKFYSTPGSSTFINGVLDKIVEALTEEGKLKKTGR 309


>gi|255657701|ref|ZP_05403110.1| ribosomal RNA small subunit methyltransferase B [Mitsuokella
           multacida DSM 20544]
 gi|260849889|gb|EEX69896.1| ribosomal RNA small subunit methyltransferase B [Mitsuokella
           multacida DSM 20544]
          Length = 452

 Score = 87.8 bits (217), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 28/153 (18%), Positives = 55/153 (35%), Gaps = 15/153 (9%)

Query: 18  IARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVM 77
            AR  AV+ LY++   G      +++        +            D  +   +++G +
Sbjct: 3   KARETAVRILYEVHENGAYANVALAKALRQLDLGEQ-----------DRRFVTELVYGAV 51

Query: 78  DRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDF 137
                +D ++   ++      ++   +  ILR G+ ++     VP     +  V +A   
Sbjct: 52  KAGGTLDWILRRYVSR--PVRKIQPFVREILRLGLYQIFYLDKVPASAACNTAVDLAKGM 109

Query: 138 FYGDEPKFINAVLDKVSRKEEIK--RSGCVSAI 168
                  F+NAVL    R+ E     SG   A 
Sbjct: 110 GVKGLSGFVNAVLRTAVREPEKAAFPSGKGHAT 142


>gi|302392192|ref|YP_003828012.1| sun protein [Acetohalobium arabaticum DSM 5501]
 gi|302204269|gb|ADL12947.1| sun protein [Acetohalobium arabaticum DSM 5501]
          Length = 448

 Score = 87.8 bits (217), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 30/139 (21%), Positives = 62/139 (44%), Gaps = 13/139 (9%)

Query: 20  RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79
           R  AV+A+Y+++  G  +  I++        AD            D      +I+G +  
Sbjct: 6   RQTAVEAVYRVNEEGAYSNLILNHLFKKYNLADQ-----------DRGLATELIYGSLRM 54

Query: 80  KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139
           + H+D +++         +++D    +ILR G+ ++    S+P  V  +E V +A D+ +
Sbjct: 55  RNHLDWILNQFADR--RVNKMDKWTRNILRLGLYQIRFLDSIPDAVACNETVELAKDYQH 112

Query: 140 GDEPKFINAVLDKVSRKEE 158
                F+N +L  + R  +
Sbjct: 113 SGAAGFVNGILRSILRSLD 131


>gi|238924695|ref|YP_002938211.1| sun protein [Eubacterium rectale ATCC 33656]
 gi|238876370|gb|ACR76077.1| sun protein [Eubacterium rectale ATCC 33656]
          Length = 469

 Score = 87.8 bits (217), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 26/139 (18%), Positives = 57/139 (41%), Gaps = 12/139 (8%)

Query: 20  RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79
           R  A++ L +I+  G  +  ++           + LD        D  +   ++ G ++ 
Sbjct: 42  RELALEMLIEINERGAFSHIVLR----------SVLDKYQYLSKQDRAFMTRLVDGTIEY 91

Query: 80  KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139
              +D +I S    K    ++   + ++LR  V ++    +VP   + +E V +A    +
Sbjct: 92  MLQLDYIIDSFSKTK--VRKMKPFIRNLLRMSVYQIKYMDAVPDSAVCNEAVKLAKRHKF 149

Query: 140 GDEPKFINAVLDKVSRKEE 158
                F+N VL  ++R  +
Sbjct: 150 AQLSGFVNGVLRNIARNID 168


>gi|209525659|ref|ZP_03274196.1| NusB antitermination factor [Arthrospira maxima CS-328]
 gi|209493828|gb|EDZ94146.1| NusB antitermination factor [Arthrospira maxima CS-328]
          Length = 209

 Score = 87.8 bits (217), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 25/96 (26%), Positives = 44/96 (45%), Gaps = 2/96 (2%)

Query: 67  EWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVI 126
            +   I+  +   ++ +D  +   +   W  SRL  I   ILR  V EL+    V  ++ 
Sbjct: 114 SYAVKILVELNTHREAVDSSLEEAMV-DWQLSRLPRIDRDILRIAVTELLY-LGVQEQIA 171

Query: 127 ISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRS 162
           ++E V +A  +   D  +FIN VL +V    + + S
Sbjct: 172 VNEAVELAKRYSDQDSYRFINGVLRRVVDHLKTESS 207


>gi|160939810|ref|ZP_02087157.1| hypothetical protein CLOBOL_04701 [Clostridium bolteae ATCC
           BAA-613]
 gi|158437244|gb|EDP15009.1| hypothetical protein CLOBOL_04701 [Clostridium bolteae ATCC
           BAA-613]
          Length = 455

 Score = 87.5 bits (216), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 28/141 (19%), Positives = 54/141 (38%), Gaps = 16/141 (11%)

Query: 20  RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79
           R   +  L          TE++ +        +  L         D  +    + G ++ 
Sbjct: 12  REIVLDIL----------TEVLEQGAFVHLVLNQALQKYQYLGKADRSFITRAVEGTLEY 61

Query: 80  KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA--HDF 137
              ID +I+     K   +++   + S+LR  V +++    VP   + +E V +A    F
Sbjct: 62  LIQIDEVINRYSKTK--INKMKPFIRSLLRMSVYQILYMDRVPDSAVCNEAVKMAVKRHF 119

Query: 138 FYGDEPKFINAVLDKVSRKEE 158
                  F+N VL  +SR++E
Sbjct: 120 SGLK--GFVNGVLRTISREKE 138


>gi|331004329|ref|ZP_08327804.1| hypothetical protein HMPREF0491_02666 [Lachnospiraceae oral taxon
           107 str. F0167]
 gi|330411395|gb|EGG90810.1| hypothetical protein HMPREF0491_02666 [Lachnospiraceae oral taxon
           107 str. F0167]
          Length = 444

 Score = 87.5 bits (216), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 27/116 (23%), Positives = 51/116 (43%), Gaps = 4/116 (3%)

Query: 43  EYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDM 102
           E E      D  L+  S     D  +F   +HGV++ +  +D +I      K    R+  
Sbjct: 20  EKEYSHKVIDMALEKYSYLSKSDRGFFSKAVHGVIEYRLQLDYIIKKYNNGK----RIKP 75

Query: 103 ILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEE 158
           ++  ILR  + +++    VP   +I+E V +           F+N +L K+S +++
Sbjct: 76  VIREILRMSIYQMLYMDRVPDRAVINEAVNLVKLRRLPGLTGFVNGILRKISGEKD 131


>gi|291526150|emb|CBK91737.1| ribosomal RNA small subunit methyltransferase RsmB [Eubacterium
           rectale DSM 17629]
          Length = 469

 Score = 87.5 bits (216), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 26/139 (18%), Positives = 57/139 (41%), Gaps = 12/139 (8%)

Query: 20  RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79
           R  A++ L +I+  G  +  ++           + LD        D  +   ++ G ++ 
Sbjct: 42  RELALEMLIEINERGAFSHIVLR----------SVLDKYQYLSKQDRAFMTRLVDGTIEY 91

Query: 80  KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139
              +D +I S    K    ++   + ++LR  V ++    +VP   + +E V +A    +
Sbjct: 92  MLQLDYIIDSFSKTK--VRKMKPFIRNLLRMSVYQIKYMDAVPDSAVCNEAVKLAKRHKF 149

Query: 140 GDEPKFINAVLDKVSRKEE 158
                F+N VL  ++R  +
Sbjct: 150 AQLSGFVNGVLRNIARNID 168


>gi|260891342|ref|ZP_05902605.1| transcription antitermination factor NusB [Leptotrichia hofstadii
           F0254]
 gi|260858725|gb|EEX73225.1| transcription antitermination factor NusB [Leptotrichia hofstadii
           F0254]
          Length = 138

 Score = 87.5 bits (216), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 29/147 (19%), Positives = 63/147 (42%), Gaps = 12/147 (8%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           R   R    + L++ ++I     + I+E              E++    ++++ R  I  
Sbjct: 3   RREIREEIFKLLFEYELIDNDIEKRINETIA----------EENLKRDEEIDFLRSYITE 52

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
           +++ K  +   I   L   W++ RL  I   +L+    E+     +  E+ I+E + IA 
Sbjct: 53  IIENKDILTDRIRQVLD-GWTYERLGTIEKVLLKISFYEIT-IKDIGYEIAINEVLEIAK 110

Query: 136 DFFYGDEPKFINAVLDKVSRKEEIKRS 162
            + Y D   F+N +L K+ +  + ++ 
Sbjct: 111 KYSYNDTKDFLNGILAKLVQNIKDEKQ 137


>gi|291527116|emb|CBK92702.1| ribosomal RNA small subunit methyltransferase RsmB [Eubacterium
           rectale M104/1]
          Length = 469

 Score = 87.5 bits (216), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 26/139 (18%), Positives = 57/139 (41%), Gaps = 12/139 (8%)

Query: 20  RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79
           R  A++ L +I+  G  +  ++           + LD        D  +   ++ G ++ 
Sbjct: 42  RELALEMLIEINERGAFSHIVLR----------SVLDKYQYLSKQDRAFMTRLVDGTIEY 91

Query: 80  KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139
              +D +I S    K    ++   + ++LR  V ++    +VP   + +E V +A    +
Sbjct: 92  MLQLDYIIDSFSKTK--VRKMKPFIRNLLRMSVYQIKYMDAVPDSAVCNEAVKLAKRHKF 149

Query: 140 GDEPKFINAVLDKVSRKEE 158
                F+N VL  ++R  +
Sbjct: 150 AQLSGFVNGVLRNIARNID 168


>gi|188997200|ref|YP_001931451.1| NusB antitermination factor [Sulfurihydrogenibium sp. YO3AOP1]
 gi|188932267|gb|ACD66897.1| NusB antitermination factor [Sulfurihydrogenibium sp. YO3AOP1]
          Length = 168

 Score = 87.5 bits (216), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 35/180 (19%), Positives = 73/180 (40%), Gaps = 24/180 (13%)

Query: 3   IQDNKKDLKLSHRR--GIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESV 60
           ++   K LK   +R    AR  +++ L+  D        ++ E+   +            
Sbjct: 1   MKKKNKSLKFLRKRLLKAARDLSMRILFAYDFRKEDLFNVLEEFLNTK-----------K 49

Query: 61  YLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELI---- 116
           +     E+   +++   +  Q ID +I S L + W F R+  I  ++LR GV EL+    
Sbjct: 50  FSPEIKEYVLKVVNFYNENSQEIDDIIKSHL-KNWRFERIGYIERAVLRLGVSELLIIHS 108

Query: 117 -----ECHSVPVEVIISEYVCIAHDFFYGD-EPKFINAVLDKVSRKEEIKRSGCVSAITQ 170
                E     + ++  + + +   +       KF+N +L K++++ E   +     +TQ
Sbjct: 109 KEESKELKDKEIRILFLDLLDLVECYTNSKLSVKFVNGILGKINKELEQNENSIHIGLTQ 168


>gi|146319474|ref|YP_001199186.1| transcription termination factor [Streptococcus suis 05ZYH33]
 gi|145690280|gb|ABP90786.1| Transcription termination factor [Streptococcus suis 05ZYH33]
          Length = 64

 Score = 87.5 bits (216), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 16/58 (27%), Positives = 30/58 (51%)

Query: 102 MILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEI 159
           MI  +I+R G+ E++     P  V ++E + +A +F      KF+N VL +  +   +
Sbjct: 1   MIDKNIMRLGLFEILHFEETPDRVAVNEAIELAKEFSDESSAKFVNGVLSQFIKARSL 58


>gi|313894854|ref|ZP_07828414.1| ribosomal RNA small subunit methyltransferase B [Selenomonas sp.
           oral taxon 137 str. F0430]
 gi|312976535|gb|EFR41990.1| ribosomal RNA small subunit methyltransferase B [Selenomonas sp.
           oral taxon 137 str. F0430]
          Length = 451

 Score = 87.5 bits (216), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 27/153 (17%), Positives = 55/153 (35%), Gaps = 19/153 (12%)

Query: 12  LSHRRGIA------RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVD 65
           ++  R  A      R  A+Q L ++ + G      +          D            D
Sbjct: 1   MTENRYAADKIDPVRELAMQVLTEVHVDGAYANVALVRAMRAAKLPDR-----------D 49

Query: 66  LEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEV 125
             +   +++G +     +D +++  L +    +R+   +  +LR G+ ++     VP   
Sbjct: 50  RRFLTELVYGTVKAGDTLDYILAKYLRDGK--ARIKPQIRELLRLGIYQIFFMDKVPASA 107

Query: 126 IISEYVCIAHDFFYGDEPKFINAVLDKVSRKEE 158
             +  V +A          F+NAVL    R+ E
Sbjct: 108 ACNTAVELAKKHGKRGADSFVNAVLRTAVREPE 140


>gi|293363740|ref|ZP_06610483.1| transcription antitermination factor NusB [Mycoplasma alligatoris
           A21JP2]
 gi|292552705|gb|EFF41472.1| transcription antitermination factor NusB [Mycoplasma alligatoris
           A21JP2]
          Length = 150

 Score = 87.5 bits (216), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 32/151 (21%), Positives = 61/151 (40%), Gaps = 24/151 (15%)

Query: 10  LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF 69
           +K    R  +R   +Q +Y+ ++       I   +  + F   ++L              
Sbjct: 1   MKYKKTRRKSREEKIQVIYRFELFD-EVINISQSFVEFDFLDPSQL-------------- 45

Query: 70  RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISE 129
              + G+      I  +I+S L   W++ R+   + ++L     EL     +P +++I+E
Sbjct: 46  -KFLEGIEKNYVFIKKIINSFLNTDWTWHRIPPFIRAVLINATAELFA---IPPKIVINE 101

Query: 130 YVCIAHDFF-----YGDEPKFINAVLDKVSR 155
            V I  DFF          KF+NA+L  V +
Sbjct: 102 AVEITKDFFCMTEKDQKFYKFVNAILQNVYK 132


>gi|262037941|ref|ZP_06011361.1| transcription antitermination factor NusB [Leptotrichia
           goodfellowii F0264]
 gi|261748019|gb|EEY35438.1| transcription antitermination factor NusB [Leptotrichia
           goodfellowii F0264]
          Length = 136

 Score = 87.5 bits (216), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 27/143 (18%), Positives = 65/143 (45%), Gaps = 12/143 (8%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           R   R    + L++ ++I     + I+E          E           +++ +  +  
Sbjct: 3   RREIREEIFKLLFEKELIDNDIDKRINEVIEENKIKKEEQ----------IDFLKSYVTE 52

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
           ++++++ +   I S L E W++ RL  +  ++L+    E+    ++  E+ I+E + IA 
Sbjct: 53  IVEKEEILVEEIKSIL-EGWTYERLGTLEKALLKIAFYEIT-IKNIGYEIAINEVLEIAK 110

Query: 136 DFFYGDEPKFINAVLDKVSRKEE 158
            + Y D  +F+N +L ++ +K  
Sbjct: 111 KYSYDDTKEFLNGILAQLVKKNN 133


>gi|284051645|ref|ZP_06381855.1| transcription antitermination protein NusB [Arthrospira platensis
           str. Paraca]
 gi|291566673|dbj|BAI88945.1| transcription antitermination protein NusB [Arthrospira platensis
           NIES-39]
          Length = 210

 Score = 87.1 bits (215), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 23/96 (23%), Positives = 45/96 (46%), Gaps = 2/96 (2%)

Query: 67  EWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVI 126
            +   I+  +   ++ +D  + + +   W   RL  I   ILR  V EL+    V  ++ 
Sbjct: 114 SYAVKILVELNTHREALDSCLEAAMV-DWQLGRLPHIDRDILRIAVTELLYMG-VQEQIA 171

Query: 127 ISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRS 162
           ++E V +A  +   +  +FIN VL +V  + + + S
Sbjct: 172 VNEAVELAKRYSDHNSYRFINGVLRRVVDQMKTQSS 207


>gi|225418642|ref|ZP_03761831.1| hypothetical protein CLOSTASPAR_05866 [Clostridium asparagiforme
           DSM 15981]
 gi|225041829|gb|EEG52075.1| hypothetical protein CLOSTASPAR_05866 [Clostridium asparagiforme
           DSM 15981]
          Length = 457

 Score = 87.1 bits (215), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 24/138 (17%), Positives = 55/138 (39%), Gaps = 12/138 (8%)

Query: 20  RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79
           R   +  L ++   G     ++++           LD        D  +   +  G ++ 
Sbjct: 12  REIVLDILMEVLERGSFVHMVLNQ----------ALDKYQYLDKADRAFITRLTEGTLEY 61

Query: 80  KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139
              ID +I+     K    ++  ++ ++LR  V +++    VP   + +E V +A    +
Sbjct: 62  LIQIDAIINQYSKTK--TQKMKPVIRNLLRLSVYQILYMDRVPDSAVCNEAVKLAAKRRF 119

Query: 140 GDEPKFINAVLDKVSRKE 157
                F+N VL  ++R++
Sbjct: 120 EGLKGFVNGVLRTIAREK 137


>gi|255014272|ref|ZP_05286398.1| putative N utilization substance protein [Bacteroides sp. 2_1_7]
 gi|256841510|ref|ZP_05547017.1| conserved hypothetical protein [Parabacteroides sp. D13]
 gi|301309371|ref|ZP_07215313.1| NusB family protein [Bacteroides sp. 20_3]
 gi|256737353|gb|EEU50680.1| conserved hypothetical protein [Parabacteroides sp. D13]
 gi|300832460|gb|EFK63088.1| NusB family protein [Bacteroides sp. 20_3]
          Length = 308

 Score = 87.1 bits (215), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 21/125 (16%), Positives = 51/125 (40%), Gaps = 3/125 (2%)

Query: 30  IDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISS 89
           I+I+     + I ++E  +      L +       D  +   +    + + +     I  
Sbjct: 175 IEIVETFALKTIKKFEEKKGSKQALLPMFKDL--EDKAFAIKLFRQSLLKGKEYRERIDK 232

Query: 90  CLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAV 149
            + + W   R+  +   I++  + E++   ++P+ V ++EY+  A  +       FIN +
Sbjct: 233 HM-KNWETERIANMDLIIMQVALAEILSFPTIPINVTLNEYIDAAKYYSTPKSGTFINGI 291

Query: 150 LDKVS 154
           LD + 
Sbjct: 292 LDSIV 296


>gi|22298329|ref|NP_681576.1| transcription antitermination protein NusB [Thermosynechococcus
           elongatus BP-1]
 gi|32171633|sp|Q8DKS0|NUSB_THEEB RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|22294508|dbj|BAC08338.1| tll0787 [Thermosynechococcus elongatus BP-1]
          Length = 212

 Score = 87.1 bits (215), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 19/100 (19%), Positives = 45/100 (45%), Gaps = 2/100 (2%)

Query: 67  EWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVI 126
            +   ++  +   +  I+ L++  +   W   RL  +  +I+   V+E+     V  +V 
Sbjct: 115 AYAIALLRCLQRYQNEIEELVNRSMV-DWQLERLTQLDRAIIEIAVVEMRY-LEVAKQVA 172

Query: 127 ISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRSGCVS 166
           I+E + +A  +      +FIN VL ++S   +  ++   +
Sbjct: 173 INEAIELAKRYSDEGSHRFINGVLRRISEALDPAQAATGN 212


>gi|262383321|ref|ZP_06076457.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B]
 gi|262294219|gb|EEY82151.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B]
          Length = 308

 Score = 87.1 bits (215), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 21/125 (16%), Positives = 51/125 (40%), Gaps = 3/125 (2%)

Query: 30  IDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISS 89
           I+I+     + I ++E  +      L +       D  +   +    + + +     I  
Sbjct: 175 IEIVETFALKTIKKFEEKKGSKQALLPMFKDL--EDKAFAIKLFRQSLLKGKEYRERIDK 232

Query: 90  CLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAV 149
            + + W   R+  +   I++  + E++   ++P+ V ++EY+  A  +       FIN +
Sbjct: 233 HM-KNWETERIANMDLIIMQVALAEILSFPTIPINVTLNEYIDAAKYYSTPKSGTFINGI 291

Query: 150 LDKVS 154
           LD + 
Sbjct: 292 LDSIV 296


>gi|150008472|ref|YP_001303215.1| putative N utilization substance protein [Parabacteroides
           distasonis ATCC 8503]
 gi|298376259|ref|ZP_06986215.1| NusB family protein [Bacteroides sp. 3_1_19]
 gi|149936896|gb|ABR43593.1| putative N utilization substance protein [Parabacteroides
           distasonis ATCC 8503]
 gi|298267296|gb|EFI08953.1| NusB family protein [Bacteroides sp. 3_1_19]
          Length = 308

 Score = 87.1 bits (215), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 21/125 (16%), Positives = 51/125 (40%), Gaps = 3/125 (2%)

Query: 30  IDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISS 89
           I+I+     + I ++E  +      L +       D  +   +    + + +     I  
Sbjct: 175 IEIVETFALKTIKKFEEKKGSKQALLPMFKDL--EDKAFAIKLFRQSLLKGKEYRERIDK 232

Query: 90  CLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAV 149
            + + W   R+  +   I++  + E++   ++P+ V ++EY+  A  +       FIN +
Sbjct: 233 HM-KNWETERIANMDLIIMQVALAEILSFPTIPINVTLNEYIDAAKYYSTPKSGTFINGI 291

Query: 150 LDKVS 154
           LD + 
Sbjct: 292 LDSIV 296


>gi|294155614|ref|YP_003559998.1| transcription anti-termination factor NusB [Mycoplasma crocodyli
           MP145]
 gi|291600060|gb|ADE19556.1| transcription anti-termination factor NusB [Mycoplasma crocodyli
           MP145]
          Length = 150

 Score = 87.1 bits (215), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 29/151 (19%), Positives = 65/151 (43%), Gaps = 24/151 (15%)

Query: 10  LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF 69
           +++   R   R   +Q LY+ ++        I+ ++ + F ++ ++              
Sbjct: 1   MEVKKSRRQNREEVIQVLYRFELFNEKIDAAIA-FQEFSFLSNEQV-------------- 45

Query: 70  RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISE 129
              I  + +    +  +I+  L + W++ R+  ++ +IL     EL    ++P  ++I+E
Sbjct: 46  -KFIEKIDNNYDFLKSIIAKFLNQNWAWLRIPPLIKAILINASAELF---TIPPRIVINE 101

Query: 130 YVCIAHDFF-----YGDEPKFINAVLDKVSR 155
            V I  D+F          KF+NA+L  V +
Sbjct: 102 AVEITKDYFCMTPDDDKYYKFVNAILQNVYK 132


>gi|225377868|ref|ZP_03755089.1| hypothetical protein ROSEINA2194_03527 [Roseburia inulinivorans DSM
           16841]
 gi|225210306|gb|EEG92660.1| hypothetical protein ROSEINA2194_03527 [Roseburia inulinivorans DSM
           16841]
          Length = 440

 Score = 87.1 bits (215), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 26/120 (21%), Positives = 48/120 (40%), Gaps = 2/120 (1%)

Query: 37  TTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWS 96
             E+  E         + LD        +  +   +  G +     +D +I+     K  
Sbjct: 15  LMEVTKEGSYSHLVIRSVLDKYQYLEKKERAFITRVSEGTIQYMIELDYIINRF--SKVK 72

Query: 97  FSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRK 156
            +++  ++ +ILR  V +L    SVP   + +E V +A    +G    F+N VL  +SR 
Sbjct: 73  VNKMKPVIRNILRMSVYQLKYMDSVPDSAVCNEAVKLAKRKGFGSLSGFVNGVLRNISRN 132


>gi|322384328|ref|ZP_08058026.1| RNA-binding Sun-like protein/16S rRNA
           adenosyl-L-methionine-dependent methyltransferase-like
           protein [Paenibacillus larvae subsp. larvae B-3650]
 gi|321150830|gb|EFX44267.1| RNA-binding Sun-like protein/16S rRNA
           adenosyl-L-methionine-dependent methyltransferase-like
           protein [Paenibacillus larvae subsp. larvae B-3650]
          Length = 461

 Score = 86.7 bits (214), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 29/141 (20%), Positives = 53/141 (37%), Gaps = 13/141 (9%)

Query: 17  GIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGV 76
             AR AA+Q L           E+  E+       +  L   +     D      I++G 
Sbjct: 14  RTAREAALQVL----------LEVEKEHAYSNLMLNKVLR-HADLSRQDAGLATEIVYGT 62

Query: 77  MDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHD 136
           + R   ID  ++  + +     +L+  +  +LR    +L     +P    ++E V IA  
Sbjct: 63  IQRLNTIDCFLARFVKK--RLDKLEPWVKCLLRLSFYQLYYLDRIPDHAAVNEAVKIAKK 120

Query: 137 FFYGDEPKFINAVLDKVSRKE 157
             +      +N VL  V R++
Sbjct: 121 RGHQGISGMVNGVLRNVIRQK 141


>gi|206976730|ref|ZP_03237634.1| sun protein [Bacillus cereus H3081.97]
 gi|206745040|gb|EDZ56443.1| sun protein [Bacillus cereus H3081.97]
          Length = 444

 Score = 86.3 bits (213), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 29/141 (20%), Positives = 55/141 (39%), Gaps = 16/141 (11%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           R   R  A+  L Q++  G  +  ++             L  +S     D+     I++G
Sbjct: 2   RQNVRELALDGLIQVEKSGAYSNLLL-----------NNLIEKSTIDRKDIGLLTEIVYG 50

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
            + R+  +D  +   L +K     ++  +  +LR  + ++I    VP    I E V IA 
Sbjct: 51  TIQRRDTLDYYLQPFLKKK-----VEAWVRVLLRLSLYQMIYLDRVPERAAIHEAVEIAK 105

Query: 136 DFFYGDEPKFINAVLDKVSRK 156
              +      +N VL  + R+
Sbjct: 106 RRGHKGIAGMVNGVLRSIQRE 126


>gi|217961285|ref|YP_002339853.1| sun protein [Bacillus cereus AH187]
 gi|222097310|ref|YP_002531367.1| sun protein [Bacillus cereus Q1]
 gi|217064955|gb|ACJ79205.1| sun protein [Bacillus cereus AH187]
 gi|221241368|gb|ACM14078.1| sun protein [Bacillus cereus Q1]
          Length = 444

 Score = 86.3 bits (213), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 29/141 (20%), Positives = 55/141 (39%), Gaps = 16/141 (11%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           R   R  A+  L Q++  G  +  ++             L  +S     D+     I++G
Sbjct: 2   RQNVRELALDGLIQVEKSGAYSNLLL-----------NNLIEKSTIDRKDIGLLTEIVYG 50

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
            + R+  +D  +   L +K     ++  +  +LR  + ++I    VP    I E V IA 
Sbjct: 51  TIQRRDTLDYYLQPFLKKK-----VEAWVRVLLRLSLYQMIYLDRVPERAAIHEAVEIAK 105

Query: 136 DFFYGDEPKFINAVLDKVSRK 156
              +      +N VL  + R+
Sbjct: 106 RRGHKGIAGMVNGVLRSIQRE 126


>gi|212696078|ref|ZP_03304206.1| hypothetical protein ANHYDRO_00614 [Anaerococcus hydrogenalis DSM
           7454]
 gi|212676707|gb|EEB36314.1| hypothetical protein ANHYDRO_00614 [Anaerococcus hydrogenalis DSM
           7454]
          Length = 129

 Score = 86.3 bits (213), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 31/142 (21%), Positives = 58/142 (40%), Gaps = 16/142 (11%)

Query: 15  RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74
            R   R    + +++  I      +I      +              L  D   F+ +  
Sbjct: 2   NRAKQRDWVFKIIFENQIKN--IDDIDQAIINHDLD-----------LKRDSFLFQSL-K 47

Query: 75  GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134
             ++  ++I+ ++ + +    S  RL  +  +IL   V E+     +PV V I+E V I+
Sbjct: 48  SYIENFKNIEDILINQIGLS-SLKRLAKVDRAILFLSVNEMKY-LDIPVSVSINEAVNIS 105

Query: 135 HDFFYGDEPKFINAVLDKVSRK 156
             +   D  KFIN+VL K++ K
Sbjct: 106 KKYSTSDGYKFINSVLGKIAEK 127


>gi|328479786|gb|EGF48904.1| transcription antitermination protein NusB [Lactobacillus rhamnosus
           MTCC 5462]
          Length = 145

 Score = 86.3 bits (213), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 24/89 (26%), Positives = 43/89 (48%), Gaps = 6/89 (6%)

Query: 52  DTELDVESVYLHV---DLE---WFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILC 105
           + E D  +VY  V   D E   +   ++ GV+  +  +D  ++  L + W+ SRL     
Sbjct: 41  NPEADKNAVYAEVLPKDTEVPSYLTALVEGVLANQAALDAALTPQLKKGWTLSRLTKPDL 100

Query: 106 SILRAGVLELIECHSVPVEVIISEYVCIA 134
            ILR G+ E+    ++P    I+E + +A
Sbjct: 101 IILRLGLYEIRYEEAMPEAAAINEAINLA 129


>gi|324327763|gb|ADY23023.1| 16S rRNA methyltransferase B [Bacillus thuringiensis serovar
           finitimus YBT-020]
          Length = 444

 Score = 86.3 bits (213), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 29/141 (20%), Positives = 55/141 (39%), Gaps = 16/141 (11%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           R   R  A+  L Q++  G  +  ++             L  +S     D+     I++G
Sbjct: 2   RQNVRELALDGLIQVEKSGAYSNLLL-----------NNLIEKSTIDRKDIGLLTEIVYG 50

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
            + R+  +D  +   L +K     ++  +  +LR  + ++I    VP    I E V IA 
Sbjct: 51  TIQRRDTLDYYLQPFLKKK-----VEAWVRVLLRLSLYQMIYLDRVPERAAIHEAVEIAK 105

Query: 136 DFFYGDEPKFINAVLDKVSRK 156
              +      +N VL  + R+
Sbjct: 106 RRGHKGIAGMVNGVLRSIQRE 126


>gi|52141623|ref|YP_085206.1| sun protein [Bacillus cereus E33L]
 gi|51975092|gb|AAU16642.1| sun protein [Bacillus cereus E33L]
          Length = 444

 Score = 86.3 bits (213), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 29/141 (20%), Positives = 55/141 (39%), Gaps = 16/141 (11%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           R   R  A+  L Q++  G  +  ++             L  +S     D+     I++G
Sbjct: 2   RQNVRELALDGLIQVEKSGAYSNLLL-----------NNLIEKSTIDRKDIGLLTEIVYG 50

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
            + R+  +D  +   L +K     ++  +  +LR  + ++I    VP    I E V IA 
Sbjct: 51  TIQRRDTLDYYLQPFLKKK-----VEAWVRVLLRLSLYQMIYLDRVPERAAIHEAVEIAK 105

Query: 136 DFFYGDEPKFINAVLDKVSRK 156
              +      +N VL  + R+
Sbjct: 106 RRGHKGIAGMVNGVLRSIQRE 126


>gi|30021953|ref|NP_833584.1| sun protein [Bacillus cereus ATCC 14579]
 gi|29897509|gb|AAP10785.1| 16S rRNA m(5)C 967 methyltransferase [Bacillus cereus ATCC 14579]
          Length = 444

 Score = 86.3 bits (213), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 29/141 (20%), Positives = 55/141 (39%), Gaps = 16/141 (11%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           R   R  A+  L Q++  G  +  ++             L  +S     D+     I++G
Sbjct: 2   RQNVRELALDGLIQVEKSGAYSNLLL-----------NNLIEKSAIDRKDIGLLTEIVYG 50

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
            + R+  +D  +   L +K     ++  +  +LR  + ++I    VP    I E V IA 
Sbjct: 51  TIQRRDTLDYYLQPFLKKK-----VEAWVRVLLRLSLYQMIYLDRVPERAAIHEAVEIAK 105

Query: 136 DFFYGDEPKFINAVLDKVSRK 156
              +      +N VL  + R+
Sbjct: 106 RRGHKGIAGMVNGVLRSIQRE 126


>gi|167760433|ref|ZP_02432560.1| hypothetical protein CLOSCI_02807 [Clostridium scindens ATCC 35704]
 gi|167661932|gb|EDS06062.1| hypothetical protein CLOSCI_02807 [Clostridium scindens ATCC 35704]
          Length = 436

 Score = 86.3 bits (213), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 30/139 (21%), Positives = 54/139 (38%), Gaps = 12/139 (8%)

Query: 20  RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79
           R   +  L Q          I  + E         LD        +  +   +++G ++ 
Sbjct: 8   RELVLDILLQ----------ITRDGEYSHIALKNVLDKYQYLDKKERAFITRVVNGTLEH 57

Query: 80  KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139
              ID +I+     K    ++  ++  I+R+ V +L    SVP   +++E V +A    +
Sbjct: 58  MIEIDYIINQF--SKVKVQKMKPVIRMIIRSAVYQLKYMDSVPDSAVLNEAVKLASKRGF 115

Query: 140 GDEPKFINAVLDKVSRKEE 158
                F+N VL  VSR  E
Sbjct: 116 STLKGFVNGVLRSVSRNLE 134


>gi|167747881|ref|ZP_02420008.1| hypothetical protein ANACAC_02610 [Anaerostipes caccae DSM 14662]
 gi|167652703|gb|EDR96832.1| hypothetical protein ANACAC_02610 [Anaerostipes caccae DSM 14662]
          Length = 448

 Score = 86.3 bits (213), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 31/139 (22%), Positives = 60/139 (43%), Gaps = 12/139 (8%)

Query: 20  RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79
           R  A+  L +ID           E  ++    +T L+        D  +F  +  G ++R
Sbjct: 5   RELALDVLMKID---------KKEELSHIAIGET-LEKYQFSEKKDRAFFTRLCQGTLER 54

Query: 80  KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139
           +  ID +I   L  K    ++  ++ S+LR G  +++    +P     +E V +A    +
Sbjct: 55  RLTIDYVID--LYSKTKVRKMKPLVRSLLRMGACQILFMDHIPDSAACNECVKLAKKRGF 112

Query: 140 GDEPKFINAVLDKVSRKEE 158
                F+N VL  +SR+++
Sbjct: 113 SKLSGFVNGVLRTISRQKQ 131


>gi|206971310|ref|ZP_03232261.1| ribosomal RNA small subunit methyltransferase B [Bacillus cereus
           AH1134]
 gi|218233863|ref|YP_002368666.1| sun protein [Bacillus cereus B4264]
 gi|296504360|ref|YP_003666060.1| sun protein [Bacillus thuringiensis BMB171]
 gi|206734082|gb|EDZ51253.1| ribosomal RNA small subunit methyltransferase B [Bacillus cereus
           AH1134]
 gi|218161820|gb|ACK61812.1| sun protein [Bacillus cereus B4264]
 gi|296325412|gb|ADH08340.1| sun protein [Bacillus thuringiensis BMB171]
          Length = 444

 Score = 85.9 bits (212), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 29/141 (20%), Positives = 55/141 (39%), Gaps = 16/141 (11%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           R   R  A+  L Q++  G  +  ++             L  +S     D+     I++G
Sbjct: 2   RQNVRELALDGLIQVEKSGAYSNLLL-----------NNLIEKSAIDRKDIGLLTEIVYG 50

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
            + R+  +D  +   L +K     ++  +  +LR  + ++I    VP    I E V IA 
Sbjct: 51  TIQRRDTLDYYLQPFLKKK-----VEAWVRVLLRLSLYQMIYLDRVPERAAIHEAVEIAK 105

Query: 136 DFFYGDEPKFINAVLDKVSRK 156
              +      +N VL  + R+
Sbjct: 106 RRGHKGIAGMVNGVLRSIQRE 126


>gi|326941634|gb|AEA17530.1| sun protein [Bacillus thuringiensis serovar chinensis CT-43]
          Length = 444

 Score = 85.9 bits (212), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 29/141 (20%), Positives = 55/141 (39%), Gaps = 16/141 (11%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           R   R  A+  L Q++  G  +  ++             L  +S     D+     I++G
Sbjct: 2   RQNVRELALDGLIQVEKSGAYSNLLL-----------NNLIEKSAIDRKDIGLLTEIVYG 50

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
            + R+  +D  +   L +K     ++  +  +LR  + ++I    VP    I E V IA 
Sbjct: 51  TIQRRDTLDYYLQPFLKKK-----VEAWVRVLLRLSLYQMIYLDRVPERAAIHEAVEIAK 105

Query: 136 DFFYGDEPKFINAVLDKVSRK 156
              +      +N VL  + R+
Sbjct: 106 RRGHKGIAGMVNGVLRSIQRE 126


>gi|42782957|ref|NP_980204.1| sun protein [Bacillus cereus ATCC 10987]
 gi|42738884|gb|AAS42812.1| sun protein [Bacillus cereus ATCC 10987]
          Length = 444

 Score = 85.9 bits (212), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 29/141 (20%), Positives = 55/141 (39%), Gaps = 16/141 (11%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           R   R  A+  L Q++  G  +  ++             L  +S     D+     I++G
Sbjct: 2   RQNVRELALDGLIQVEKSGAYSNLLL-----------NNLIEKSTIDRKDIGLLTEIVYG 50

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
            + R+  +D  +   L +K     ++  +  +LR  + ++I    VP    I E V IA 
Sbjct: 51  TIQRRDTLDYYLQPFLKKK-----VEAWVRVLLRLSLYQMIYLDRVPERAAIHEAVEIAK 105

Query: 136 DFFYGDEPKFINAVLDKVSRK 156
              +      +N VL  + R+
Sbjct: 106 RRGHKGIAGMVNGVLRSIQRE 126


>gi|196038686|ref|ZP_03105994.1| sun protein [Bacillus cereus NVH0597-99]
 gi|196030409|gb|EDX69008.1| sun protein [Bacillus cereus NVH0597-99]
          Length = 444

 Score = 85.9 bits (212), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 29/141 (20%), Positives = 55/141 (39%), Gaps = 16/141 (11%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           R   R  A+  L Q++  G  +  ++             L  +S     D+     I++G
Sbjct: 2   RQNVRELALDGLIQVEKSGAYSNLLL-----------NNLIEKSTIDRKDIGLLTEIVYG 50

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
            + R+  +D  +   L +K     ++  +  +LR  + ++I    VP    I E V IA 
Sbjct: 51  TIQRRDTLDYYLQPFLKKK-----VEAWVRVLLRLSLYQMIYLDRVPERAAIHEAVEIAK 105

Query: 136 DFFYGDEPKFINAVLDKVSRK 156
              +      +N VL  + R+
Sbjct: 106 RRGHKGIAGMVNGVLRSIQRE 126


>gi|218899018|ref|YP_002447429.1| sun protein [Bacillus cereus G9842]
 gi|218546015|gb|ACK98409.1| sun protein [Bacillus cereus G9842]
          Length = 444

 Score = 85.9 bits (212), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 29/141 (20%), Positives = 55/141 (39%), Gaps = 16/141 (11%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           R   R  A+  L Q++  G  +  ++             L  +S     D+     I++G
Sbjct: 2   RQNVRELALDGLIQVEKSGAYSNLLL-----------NNLIEKSAIDRKDIGLLTEIVYG 50

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
            + R+  +D  +   L +K     ++  +  +LR  + ++I    VP    I E V IA 
Sbjct: 51  TIQRRDTLDYYLQPFLKKK-----VEAWVRVLLRLSLYQMIYLDRVPERAAIHEAVEIAK 105

Query: 136 DFFYGDEPKFINAVLDKVSRK 156
              +      +N VL  + R+
Sbjct: 106 RRGHKGIAGMVNGVLRSIQRE 126


>gi|254735904|ref|ZP_05193610.1| ribosomal RNA small subunit methyltransferase B [Bacillus anthracis
           str. Western North America USA6153]
          Length = 444

 Score = 85.9 bits (212), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 29/141 (20%), Positives = 55/141 (39%), Gaps = 16/141 (11%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           R   R  A+  L Q++  G  +  ++             L  +S     D+     I++G
Sbjct: 2   RQNVRELALDGLIQVEKSGAYSNLLL-----------NNLIEKSTIDRKDIGLLTEIVYG 50

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
            + R+  +D  +   L +K     ++  +  +LR  + ++I    VP    I E V IA 
Sbjct: 51  TIQRRDTLDYYLQPFLKKK-----VEAWVRVLLRLSLYQMIYLDRVPERAAIHEAVEIAK 105

Query: 136 DFFYGDEPKFINAVLDKVSRK 156
              +      +N VL  + R+
Sbjct: 106 RRGHKGIAGMVNGVLRSIQRE 126


>gi|154505951|ref|ZP_02042689.1| hypothetical protein RUMGNA_03493 [Ruminococcus gnavus ATCC 29149]
 gi|153793969|gb|EDN76389.1| hypothetical protein RUMGNA_03493 [Ruminococcus gnavus ATCC 29149]
          Length = 448

 Score = 85.9 bits (212), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 23/124 (18%), Positives = 50/124 (40%), Gaps = 6/124 (4%)

Query: 37  TTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWS 96
             E+  +        +  L+        +  +   +  G ++    +D +++     K  
Sbjct: 15  LMEVTQQNVYSHLALNAVLEKYQYLEKKERAFITRVTEGTLEHMIELDYILNQF--SKVK 72

Query: 97  FSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA--HDFFYGDEPKFINAVLDKVS 154
            +++  ++ +ILR+ V +L    SVP   + +E V +A    F       F+N VL  V+
Sbjct: 73  VNKMKPVIRNILRSAVYQLKYMDSVPDSAVCNEAVKLAVKKGFGTLR--GFVNGVLRNVA 130

Query: 155 RKEE 158
           R  +
Sbjct: 131 RGLD 134


>gi|30263868|ref|NP_846245.1| sun protein [Bacillus anthracis str. Ames]
 gi|47529294|ref|YP_020643.1| sun protein [Bacillus anthracis str. 'Ames Ancestor']
 gi|49186715|ref|YP_029967.1| sun protein [Bacillus anthracis str. Sterne]
 gi|49478421|ref|YP_037926.1| sun protein [Bacillus thuringiensis serovar konkukian str. 97-27]
 gi|118479087|ref|YP_896238.1| sun protein [Bacillus thuringiensis str. Al Hakam]
 gi|165872297|ref|ZP_02216934.1| sun protein [Bacillus anthracis str. A0488]
 gi|167636414|ref|ZP_02394713.1| sun protein [Bacillus anthracis str. A0442]
 gi|167641141|ref|ZP_02399396.1| sun protein [Bacillus anthracis str. A0193]
 gi|170688847|ref|ZP_02880050.1| sun protein [Bacillus anthracis str. A0465]
 gi|170708813|ref|ZP_02899249.1| sun protein [Bacillus anthracis str. A0389]
 gi|177654922|ref|ZP_02936639.1| sun protein [Bacillus anthracis str. A0174]
 gi|190565749|ref|ZP_03018668.1| sun protein [Bacillus anthracis Tsiankovskii-I]
 gi|196035830|ref|ZP_03103232.1| sun protein [Bacillus cereus W]
 gi|196047441|ref|ZP_03114653.1| sun protein [Bacillus cereus 03BB108]
 gi|218904995|ref|YP_002452829.1| sun protein [Bacillus cereus AH820]
 gi|227813227|ref|YP_002813236.1| ribosomal RNA small subunit methyltransferase B [Bacillus anthracis
           str. CDC 684]
 gi|229603771|ref|YP_002868102.1| ribosomal RNA small subunit methyltransferase B [Bacillus anthracis
           str. A0248]
 gi|254683426|ref|ZP_05147286.1| ribosomal RNA small subunit methyltransferase B [Bacillus anthracis
           str. CNEVA-9066]
 gi|254721397|ref|ZP_05183186.1| ribosomal RNA small subunit methyltransferase B [Bacillus anthracis
           str. A1055]
 gi|254739848|ref|ZP_05197541.1| ribosomal RNA small subunit methyltransferase B [Bacillus anthracis
           str. Kruger B]
 gi|254751038|ref|ZP_05203077.1| ribosomal RNA small subunit methyltransferase B [Bacillus anthracis
           str. Vollum]
 gi|254756703|ref|ZP_05208732.1| ribosomal RNA small subunit methyltransferase B [Bacillus anthracis
           str. Australia 94]
 gi|301055356|ref|YP_003793567.1| sun protein [Bacillus anthracis CI]
 gi|30258512|gb|AAP27731.1| ribosomal RNA small subunit methyltransferase B [Bacillus anthracis
           str. Ames]
 gi|47504442|gb|AAT33118.1| sun protein [Bacillus anthracis str. 'Ames Ancestor']
 gi|49180642|gb|AAT56018.1| sun protein [Bacillus anthracis str. Sterne]
 gi|49329977|gb|AAT60623.1| sun protein [Bacillus thuringiensis serovar konkukian str. 97-27]
 gi|118418312|gb|ABK86731.1| sun protein [Bacillus thuringiensis str. Al Hakam]
 gi|164711973|gb|EDR17513.1| sun protein [Bacillus anthracis str. A0488]
 gi|167510921|gb|EDR86312.1| sun protein [Bacillus anthracis str. A0193]
 gi|167528156|gb|EDR90943.1| sun protein [Bacillus anthracis str. A0442]
 gi|170126298|gb|EDS95189.1| sun protein [Bacillus anthracis str. A0389]
 gi|170667202|gb|EDT17962.1| sun protein [Bacillus anthracis str. A0465]
 gi|172080433|gb|EDT65520.1| sun protein [Bacillus anthracis str. A0174]
 gi|190562668|gb|EDV16634.1| sun protein [Bacillus anthracis Tsiankovskii-I]
 gi|195991479|gb|EDX55445.1| sun protein [Bacillus cereus W]
 gi|196021749|gb|EDX60444.1| sun protein [Bacillus cereus 03BB108]
 gi|218535394|gb|ACK87792.1| sun protein [Bacillus cereus AH820]
 gi|227005311|gb|ACP15054.1| ribosomal RNA small subunit methyltransferase B [Bacillus anthracis
           str. CDC 684]
 gi|229268179|gb|ACQ49816.1| ribosomal RNA small subunit methyltransferase B [Bacillus anthracis
           str. A0248]
 gi|300377525|gb|ADK06429.1| sun protein [Bacillus cereus biovar anthracis str. CI]
          Length = 444

 Score = 85.9 bits (212), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 29/141 (20%), Positives = 55/141 (39%), Gaps = 16/141 (11%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           R   R  A+  L Q++  G  +  ++             L  +S     D+     I++G
Sbjct: 2   RQNVRELALDGLIQVEKSGAYSNLLL-----------NNLIEKSTIDRKDIGLLTEIVYG 50

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
            + R+  +D  +   L +K     ++  +  +LR  + ++I    VP    I E V IA 
Sbjct: 51  TIQRRDTLDYYLQPFLKKK-----VEAWVRVLLRLSLYQMIYLDRVPERAAIHEAVEIAK 105

Query: 136 DFFYGDEPKFINAVLDKVSRK 156
              +      +N VL  + R+
Sbjct: 106 RRGHKGIAGMVNGVLRSIQRE 126


>gi|47569491|ref|ZP_00240171.1| sun protein [Bacillus cereus G9241]
 gi|47553820|gb|EAL12191.1| sun protein [Bacillus cereus G9241]
          Length = 444

 Score = 85.9 bits (212), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 29/141 (20%), Positives = 55/141 (39%), Gaps = 16/141 (11%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           R   R  A+  L Q++  G  +  ++             L  +S     D+     I++G
Sbjct: 2   RQNVRELALDGLIQVEKSGAYSNLLL-----------NNLIEKSTIDRKDIGLLTEIVYG 50

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
            + R+  +D  +   L +K     ++  +  +LR  + ++I    VP    I E V IA 
Sbjct: 51  TIQRRDTLDYYLQPFLKKK-----VEAWVRVLLRLSLYQMIYLDRVPERAAIHEAVEIAK 105

Query: 136 DFFYGDEPKFINAVLDKVSRK 156
              +      +N VL  + R+
Sbjct: 106 RRGHKGIAGMVNGVLRSIQRE 126


>gi|225865846|ref|YP_002751224.1| ribosomal RNA small subunit methyltransferase B [Bacillus cereus
           03BB102]
 gi|225787241|gb|ACO27458.1| ribosomal RNA small subunit methyltransferase B [Bacillus cereus
           03BB102]
          Length = 444

 Score = 85.9 bits (212), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 29/141 (20%), Positives = 55/141 (39%), Gaps = 16/141 (11%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           R   R  A+  L Q++  G  +  ++             L  +S     D+     I++G
Sbjct: 2   RQNVRELALDGLIQVEKSGAYSNLLL-----------NNLIEKSTIDRKDIGLLTEIVYG 50

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
            + R+  +D  +   L +K     ++  +  +LR  + ++I    VP    I E V IA 
Sbjct: 51  TIQRRDTLDYYLQPFLKKK-----VEAWVRVLLRLSLYQMIYLDRVPERAAIHEAVEIAK 105

Query: 136 DFFYGDEPKFINAVLDKVSRK 156
              +      +N VL  + R+
Sbjct: 106 RRGHKGIAGMVNGVLRSIQRE 126


>gi|65321192|ref|ZP_00394151.1| COG0144: tRNA and rRNA cytosine-C5-methylases [Bacillus anthracis
           str. A2012]
          Length = 444

 Score = 85.9 bits (212), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 29/141 (20%), Positives = 55/141 (39%), Gaps = 16/141 (11%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           R   R  A+  L Q++  G  +  ++             L  +S     D+     I++G
Sbjct: 2   RQNVRELALDGLIQVEKSGAYSNLLL-----------NNLIEKSTIDRKDIGLLTEIVYG 50

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
            + R+  +D  +   L +K     ++  +  +LR  + ++I    VP    I E V IA 
Sbjct: 51  TIQRRDTLDYYLQPFLKKK-----VEAWVRVLLRLSLYQMIYLDRVPERAAIHEAVEIAK 105

Query: 136 DFFYGDEPKFINAVLDKVSRK 156
              +      +N VL  + R+
Sbjct: 106 RRGHKGIAGMVNGVLRSIQRE 126


>gi|146297084|ref|YP_001180855.1| sun protein [Caldicellulosiruptor saccharolyticus DSM 8903]
 gi|145410660|gb|ABP67664.1| sun protein [Caldicellulosiruptor saccharolyticus DSM 8903]
          Length = 433

 Score = 85.9 bits (212), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 28/149 (18%), Positives = 62/149 (41%), Gaps = 21/149 (14%)

Query: 10  LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF 69
           +K++ RR     AA   +++I+       + + E   ++                D   F
Sbjct: 1   MKINTRR-----AAFLVIFEIESRKNVNADALMEKYHHKLKKTE-----------DRALF 44

Query: 70  RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISE 129
             ++HGV+  K  +D  I+    +     ++     +ILR    EL+    +P    ++E
Sbjct: 45  VELVHGVLRYKNILDYYINFVAKKGVKDKKI----LNILRIATYELLFLDKIPDYATVNE 100

Query: 130 YVCIAHDFFYGDEPKFINAVLDKVSRKEE 158
              +A +    ++  F+NA+L  + R+++
Sbjct: 101 ACELAKN-VNKNQKDFVNAILRNIIRRKD 128


>gi|325846649|ref|ZP_08169564.1| transcription antitermination factor NusB [Anaerococcus
           hydrogenalis ACS-025-V-Sch4]
 gi|325481407|gb|EGC84448.1| transcription antitermination factor NusB [Anaerococcus
           hydrogenalis ACS-025-V-Sch4]
          Length = 129

 Score = 85.5 bits (211), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 32/142 (22%), Positives = 58/142 (40%), Gaps = 16/142 (11%)

Query: 15  RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74
            R   R    + +++  I      +I      +              L  D   F+ +  
Sbjct: 2   NRAKQRDWVFKIIFENQIKN--IDDIDQAIINHDLD-----------LKRDSFLFQSL-K 47

Query: 75  GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134
             +D  ++I+ ++ + +    S  RL  +  +IL   V E+     +PV V I+E V I+
Sbjct: 48  SYIDNFKNIEDILINQIGLS-SLKRLAKVDRAILFLSVNEMKY-LDIPVSVSINEAVNIS 105

Query: 135 HDFFYGDEPKFINAVLDKVSRK 156
             +   D  KFIN+VL K++ K
Sbjct: 106 KKYSTSDGYKFINSVLGKIAEK 127


>gi|307244450|ref|ZP_07526559.1| ribosomal RNA small subunit methyltransferase B [Peptostreptococcus
           stomatis DSM 17678]
 gi|306492143|gb|EFM64187.1| ribosomal RNA small subunit methyltransferase B [Peptostreptococcus
           stomatis DSM 17678]
          Length = 447

 Score = 85.5 bits (211), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 31/152 (20%), Positives = 68/152 (44%), Gaps = 14/152 (9%)

Query: 19  ARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMD 78
           AR  A + L+ I++ G  +   +++Y             E+     D  +   +++G+++
Sbjct: 3   ARYLAYKILFDIEVNGNYSNMALNKYLN-----------EAGLDDQDKGFVTELVYGIIE 51

Query: 79  RKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFF 138
           +K+++D +I+     K    ++   +  +LR GV +L+    V     I+E V I     
Sbjct: 52  KKRYLDYMINK--VSKIKVRKMQHSVKLVLRMGVYQLVYMDGVTDYAAINESVNIMKKL- 108

Query: 139 YGDEPKFINAVLDKVSRKEEIKRSGCVSAITQ 170
                 F+NAVL  +SR  +  +   ++ + +
Sbjct: 109 DKRSASFVNAVLRNISRNLDEVKDISLNTVDK 140


>gi|330814127|ref|YP_004358366.1| antitermination protein NusB [Candidatus Pelagibacter sp. IMCC9063]
 gi|327487222|gb|AEA81627.1| antitermination protein NusB [Candidatus Pelagibacter sp. IMCC9063]
          Length = 125

 Score = 85.5 bits (211), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 26/90 (28%), Positives = 52/90 (57%)

Query: 70  RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISE 129
           + + +G  +++  +D ++S  L+   SF  LDMIL  IL+A + E++    +P +V++ E
Sbjct: 36  KKVFNGFFEKEADLDQILSKNLSSNISFKNLDMILKIILKAAIFEVLYMPKIPFKVVVDE 95

Query: 130 YVCIAHDFFYGDEPKFINAVLDKVSRKEEI 159
           Y+ +   ++   +   +NAVLD V + E +
Sbjct: 96  YLAVTEMYYDSSQKGLVNAVLDSVFKSEHV 125


>gi|312797049|ref|YP_004029971.1| N utilization substance protein B [Burkholderia rhizoxinica HKI
           454]
 gi|312168824|emb|CBW75827.1| N utilization substance protein B [Burkholderia rhizoxinica HKI
           454]
          Length = 60

 Score = 85.5 bits (211), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 20/59 (33%), Positives = 30/59 (50%), Gaps = 3/59 (5%)

Query: 108 LRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVS---RKEEIKRSG 163
           L     E      +P  V+I+E V +A  F   D  K++N VLDK++   R +E+K  G
Sbjct: 2   LLIAAYEFQHHFEIPYRVVINEAVELAKTFGGADGYKYVNGVLDKLAVTMRADEVKARG 60


>gi|302874750|ref|YP_003843383.1| sun protein [Clostridium cellulovorans 743B]
 gi|307690635|ref|ZP_07633081.1| sun protein [Clostridium cellulovorans 743B]
 gi|302577607|gb|ADL51619.1| sun protein [Clostridium cellulovorans 743B]
          Length = 443

 Score = 85.5 bits (211), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 31/137 (22%), Positives = 57/137 (41%), Gaps = 13/137 (9%)

Query: 20  RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79
           R  AV  L           ++ +E        + EL+ +S   ++D      I++G +  
Sbjct: 5   RETAVIIL----------NKVFNERGYSNIIINKELN-KSNLENIDKALVTEIVYGTIQY 53

Query: 80  KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139
           K  ID +I   +      S +D  + +ILR+ + ++     +P   +++E V ++     
Sbjct: 54  KYTIDKIIDHFVGRG--TSSVDKKVVNILRSAIYQIRYLDKIPSFAVVNEAVELSKKLST 111

Query: 140 GDEPKFINAVLDKVSRK 156
               KFIN VL    RK
Sbjct: 112 VTSSKFINGVLRNYIRK 128


>gi|304373104|ref|YP_003856313.1| Transcription termination factor [Mycoplasma hyorhinis HUB-1]
 gi|304309295|gb|ADM21775.1| Transcription termination factor [Mycoplasma hyorhinis HUB-1]
 gi|330723272|gb|AEC45642.1| Transcription termination factor [Mycoplasma hyorhinis MCLD]
          Length = 152

 Score = 85.5 bits (211), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 42/172 (24%), Positives = 74/172 (43%), Gaps = 24/172 (13%)

Query: 1   MTIQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESV 60
           MT  +NKK      +R I R+  +  LY  ++             T     + +L  E +
Sbjct: 1   MTQTENKK--YPFSKRRIHRMEIISLLYSYELFDNKIN-------TNEIFKNYDLTKEQI 51

Query: 61  YLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHS 120
                      I+  +  + +    LI + L   WS++R+  ++ +IL  G  EL+   +
Sbjct: 52  ----------KILEAIEKKYEIFQKLIINFLGSNWSWNRILPLVRAILLLGSFELLVNDN 101

Query: 121 VPVEVIISEYVCIAHDFF--YGDEPKFINAVLDKVSRKEEIKRSGCVSAITQ 170
              +V+I+E V +  D+      E KF+NAVLDK+++  E +        TQ
Sbjct: 102 ---KVVINEMVQMIKDYTLESDKEYKFVNAVLDKINQFYEQENLKVYKKTTQ 150


>gi|153853041|ref|ZP_01994450.1| hypothetical protein DORLON_00435 [Dorea longicatena DSM 13814]
 gi|149753827|gb|EDM63758.1| hypothetical protein DORLON_00435 [Dorea longicatena DSM 13814]
          Length = 51

 Score = 85.5 bits (211), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 18/50 (36%), Positives = 26/50 (52%)

Query: 105 CSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVS 154
            +ILR  V E+     VP  V I+E V +A  +   D   F+N VL K++
Sbjct: 1   LTILRLAVYEMKWDEDVPTGVAINEAVNLAKKYSSEDGASFVNGVLAKLA 50


>gi|33862283|ref|NP_893843.1| transcription antitermination protein NusB [Prochlorococcus marinus
           str. MIT 9313]
 gi|33640396|emb|CAE20185.1| Antitermination protein NusB [Prochlorococcus marinus str. MIT
           9313]
          Length = 222

 Score = 85.5 bits (211), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 25/81 (30%), Positives = 39/81 (48%), Gaps = 2/81 (2%)

Query: 73  IHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVC 132
           +  V++++  ID  I   + E W  SRL  I   ILR  V++L      P  V  +E V 
Sbjct: 135 VRLVIEQRNSIDASID-AVMEGWRLSRLPRIDRDILRLAVVDLTALQ-TPFAVACNEAVE 192

Query: 133 IAHDFFYGDEPKFINAVLDKV 153
           +AH +      + IN VL ++
Sbjct: 193 LAHRYSDDQGRRMINGVLRRL 213


>gi|323342016|ref|ZP_08082249.1| hypothetical protein HMPREF0357_10429 [Erysipelothrix rhusiopathiae
           ATCC 19414]
 gi|322464441|gb|EFY09634.1| hypothetical protein HMPREF0357_10429 [Erysipelothrix rhusiopathiae
           ATCC 19414]
          Length = 134

 Score = 85.2 bits (210), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 39/140 (27%), Positives = 60/140 (42%), Gaps = 12/140 (8%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           R   R  A+ A+Y   +   S  E++   E  RF ++    ++   L  ++     ++  
Sbjct: 5   RYNERQNAMSAIYIHLLREQSMQEVL---EDNRFVSEVGTFIQDFNLQDEM---LQVVMN 58

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELI--ECHSVPVEVIISEYVCI 133
           V  RK      I   LT+ W F RL  I  +IL     EL       V   VI++E V +
Sbjct: 59  VEARKDIYSRAIDHYLTK-WRFDRLGFIEQAILLMACAELELGYQDKV---VIVNEAVNL 114

Query: 134 AHDFFYGDEPKFINAVLDKV 153
           A DF   +  K IN V+D +
Sbjct: 115 AKDFSDEESYKLINGVIDAL 134


>gi|227499439|ref|ZP_03929550.1| possible transcription antitermination protein NusB [Anaerococcus
           tetradius ATCC 35098]
 gi|227218501|gb|EEI83744.1| possible transcription antitermination protein NusB [Anaerococcus
           tetradius ATCC 35098]
          Length = 133

 Score = 85.2 bits (210), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 33/149 (22%), Positives = 62/149 (41%), Gaps = 21/149 (14%)

Query: 15  RRGIARLAAVQALYQIDIIG-CSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVII 73
            R   R    + +YQ  I       +I++E                     D ++ +  I
Sbjct: 2   NRVEQREWVFKLIYQDMISKIEDVDKILAELNL-----------------ADEDFIKASI 44

Query: 74  HGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCI 133
              +D+   I+  + S L  K    R+  +L SIL   + E+     +PV V I+E V +
Sbjct: 45  SSYLDKLTLIEEKVDSNLDSKHK--RIAKVLRSILYLSINEI-YFMDIPVSVSINEAVNL 101

Query: 134 AHDFFYGDEPKFINAVLDKVSRKEEIKRS 162
           A  +   ++ K +N++L  + RK+  ++S
Sbjct: 102 AKKYSDEEDYKLVNSILGSIVRKDGNEKS 130


>gi|113954607|ref|YP_729249.1| transcription antitermination protein NusB [Synechococcus sp.
           CC9311]
 gi|113881958|gb|ABI46916.1| putative transcription antitermination factor NusB [Synechococcus
           sp. CC9311]
          Length = 210

 Score = 85.2 bits (210), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 26/81 (32%), Positives = 41/81 (50%), Gaps = 2/81 (2%)

Query: 73  IHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVC 132
           +  V+ +++ ID ++   + E W  +RL  I   ILR  V++L E    P  V  +E V 
Sbjct: 123 VTFVLKKRKAIDQMLDGVM-EGWRLTRLPRIDRDILRLAVIDLSELK-TPAAVACNEAVE 180

Query: 133 IAHDFFYGDEPKFINAVLDKV 153
           +AH F      K IN VL ++
Sbjct: 181 LAHRFSDEQGRKMINGVLRRL 201


>gi|302386503|ref|YP_003822325.1| sun protein [Clostridium saccharolyticum WM1]
 gi|302197131|gb|ADL04702.1| sun protein [Clostridium saccharolyticum WM1]
          Length = 446

 Score = 85.2 bits (210), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 28/149 (18%), Positives = 58/149 (38%), Gaps = 16/149 (10%)

Query: 12  LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71
           +  +   +R   ++ L +I   G  +  I+ +           L+        +  +   
Sbjct: 1   MMTKETDSREIVLEILLEILERGGYSHIILRQ----------ALNKYQYLEKSERAFITR 50

Query: 72  IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
            + G ++    +D +I S         ++  ++ +ILR  V +L+    VP   + +E V
Sbjct: 51  TVEGTVEYLLQMDYIIDSF--SNIKVRKMKPVIRTILRMSVYQLLYMDRVPDSAVCNEAV 108

Query: 132 CIA--HDFFYGDEPKFINAVLDKVSRKEE 158
            +A    F       F+N VL  +SR +E
Sbjct: 109 KLAVKRKFTGLK--GFVNGVLRNISRNKE 135


>gi|302389593|ref|YP_003825414.1| sun protein [Thermosediminibacter oceani DSM 16646]
 gi|302200221|gb|ADL07791.1| sun protein [Thermosediminibacter oceani DSM 16646]
          Length = 450

 Score = 85.2 bits (210), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 26/139 (18%), Positives = 59/139 (42%), Gaps = 16/139 (11%)

Query: 20  RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79
           R  AV+ L +++  G  +   ++ + T     +            D      +++GV+  
Sbjct: 9   RELAVRILTEVE-RGSYSNLSLNRHLTAEISRE------------DRALITELVYGVIKH 55

Query: 80  KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139
           +  +D ++S         + ++ I+ + LR G+ +++    +P    ++E V IA  +  
Sbjct: 56  RIRLDYVLSKFSKIG--LNDINPIILNCLRVGLYQILFLDKIPDYAAVNESVNIAKLYS- 112

Query: 140 GDEPKFINAVLDKVSRKEE 158
                F+N VL  V R ++
Sbjct: 113 KKAAGFVNGVLRNVIRSKD 131


>gi|20807946|ref|NP_623117.1| tRNA and rRNA cytosine-C5-methylase [Thermoanaerobacter
           tengcongensis MB4]
 gi|254479565|ref|ZP_05092880.1| ribosomal RNA small subunit methyltransferase B [Carboxydibrachium
           pacificum DSM 12653]
 gi|20516516|gb|AAM24721.1| tRNA and rRNA cytosine-C5-methylases [Thermoanaerobacter
           tengcongensis MB4]
 gi|214034503|gb|EEB75262.1| ribosomal RNA small subunit methyltransferase B [Carboxydibrachium
           pacificum DSM 12653]
          Length = 443

 Score = 85.2 bits (210), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 36/140 (25%), Positives = 60/140 (42%), Gaps = 16/140 (11%)

Query: 19  ARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMD 78
           AR  A + LY  D++      +   Y    F      D       VD  + + +++GV++
Sbjct: 3   ARELAYRILY--DVV------VKKAYINISFAKHLRNDE---VKEVDAAFVKELVYGVIE 51

Query: 79  RKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFF 138
           RK  +D ++S  + +      L      +L  G+ +L+    VP    I+E V IA  F 
Sbjct: 52  RKYTLDFILSFFIKKSADTKAL-----LLLEMGLYQLLYMDKVPDYAAINETVEIAKKFL 106

Query: 139 YGDEPKFINAVLDKVSRKEE 158
                 F+NAVL    R++E
Sbjct: 107 SKKGASFLNAVLRSYLREKE 126


>gi|154494846|ref|ZP_02033851.1| hypothetical protein PARMER_03890 [Parabacteroides merdae ATCC
           43184]
 gi|154085396|gb|EDN84441.1| hypothetical protein PARMER_03890 [Parabacteroides merdae ATCC
           43184]
          Length = 308

 Score = 85.2 bits (210), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 17/90 (18%), Positives = 39/90 (43%), Gaps = 1/90 (1%)

Query: 65  DLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVE 124
           D  +   +    + +       I+  + + W   R+  +   I++  + E++   ++P+ 
Sbjct: 208 DQSFAIKLFRQSLMKGSEFRERINKHM-KNWETERIANMDLIIMQVALAEIMTFPTIPIN 266

Query: 125 VIISEYVCIAHDFFYGDEPKFINAVLDKVS 154
           V ++EY+  A  +       FIN +LD V 
Sbjct: 267 VTLNEYIDTAKYYSTPKSGTFINGILDSVV 296


>gi|158522242|ref|YP_001530112.1| sun protein [Desulfococcus oleovorans Hxd3]
 gi|158511068|gb|ABW68035.1| sun protein [Desulfococcus oleovorans Hxd3]
          Length = 468

 Score = 84.8 bits (209), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 26/146 (17%), Positives = 56/146 (38%), Gaps = 14/146 (9%)

Query: 5   DNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHV 64
           DN++    + R+   R  A++ L  ++    +  ++  E        +            
Sbjct: 9   DNRRP--TAARKSDPRAVALRILTALEKGHRTLDQVADEALARVSFPE----------KR 56

Query: 65  DLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVE 124
           D      +++GV+  +  +D  I    +      R+D  + +ILR G+ +L     +P  
Sbjct: 57  DRALVTTLVYGVLRWRNTLDYTIV-HFSRT-PLQRMDPAVLNILRLGLFQLRFLDRIPDF 114

Query: 125 VIISEYVCIAHDFFYGDEPKFINAVL 150
             I+  V ++     G    F+N +L
Sbjct: 115 AAINSSVDLSKQAGLGRLSGFVNGLL 140


>gi|218262680|ref|ZP_03477038.1| hypothetical protein PRABACTJOHN_02717 [Parabacteroides johnsonii
           DSM 18315]
 gi|218223231|gb|EEC95881.1| hypothetical protein PRABACTJOHN_02717 [Parabacteroides johnsonii
           DSM 18315]
          Length = 308

 Score = 84.8 bits (209), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 17/90 (18%), Positives = 39/90 (43%), Gaps = 1/90 (1%)

Query: 65  DLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVE 124
           D  +   +    + +       I+  + + W   R+  +   I++  + E++   ++P+ 
Sbjct: 208 DQSFAIKLFRQSLMKGSEFRERINKHM-KNWETERIANMDLIIMQVALAEIMTFPTIPIN 266

Query: 125 VIISEYVCIAHDFFYGDEPKFINAVLDKVS 154
           V ++EY+  A  +       FIN +LD V 
Sbjct: 267 VTLNEYIDTAKYYSTPKSGTFINGILDSVV 296


>gi|150016032|ref|YP_001308286.1| sun protein [Clostridium beijerinckii NCIMB 8052]
 gi|149902497|gb|ABR33330.1| sun protein [Clostridium beijerinckii NCIMB 8052]
          Length = 439

 Score = 84.8 bits (209), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 28/139 (20%), Positives = 58/139 (41%), Gaps = 15/139 (10%)

Query: 20  RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79
           R  AV+ L            +++E          EL+ E+     D      I++GV+ R
Sbjct: 4   RKLAVKIL----------GRVLNEGAYSNIVLAKELN-EAELSDKDKALLTEIVYGVLRR 52

Query: 80  KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139
           K+ +D++IS+ +        ++  + +ILR  + ++     +P     +E V  A +   
Sbjct: 53  KKTLDIIISNFVK---DLKLMNKDILNILRVAIYQMNFLDKIPSYAACNEAVEEAKEISE 109

Query: 140 GDEPKFINAVLDKVSRKEE 158
            D  K +N +L   ++  +
Sbjct: 110 NDS-KLVNGILRNFTKNPD 127


>gi|317472520|ref|ZP_07931840.1| ribosomal RNA small subunit methyltransferase B [Anaerostipes sp.
           3_2_56FAA]
 gi|316899997|gb|EFV21991.1| ribosomal RNA small subunit methyltransferase B [Anaerostipes sp.
           3_2_56FAA]
          Length = 448

 Score = 84.8 bits (209), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 31/140 (22%), Positives = 59/140 (42%), Gaps = 14/140 (10%)

Query: 20  RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79
           R  A+  L +ID           E  ++    +T L+        D  +F  +  G ++R
Sbjct: 5   RELALDVLMKID---------KKEELSHIAIGET-LEKYQFSEKKDRAFFTRLCQGTLER 54

Query: 80  KQHIDLLISSCLTEKWSFSR-LDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFF 138
           +  ID +I      K    R +  ++ S+LR G  +++    +P     +E V +A    
Sbjct: 55  RLTIDYVIDLYSKTK---ERKMKPLVRSLLRMGACQILFMDHIPDSAACNECVKLAKKRG 111

Query: 139 YGDEPKFINAVLDKVSRKEE 158
           +     F+N VL  +SR+++
Sbjct: 112 FSKLSGFVNGVLRTISRQKQ 131


>gi|154485073|ref|ZP_02027521.1| hypothetical protein EUBVEN_02796 [Eubacterium ventriosum ATCC
           27560]
 gi|149734026|gb|EDM50145.1| hypothetical protein EUBVEN_02796 [Eubacterium ventriosum ATCC
           27560]
          Length = 448

 Score = 84.8 bits (209), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 25/104 (24%), Positives = 48/104 (46%), Gaps = 2/104 (1%)

Query: 55  LDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLE 114
           LD           +   +  G ++R+  ID +I+     K   +++  ++  ILR GV +
Sbjct: 37  LDKNVSLDKHQRSFITRLFQGTLERRIEIDFIINQF--SKTPVNKMKPVIREILRMGVYQ 94

Query: 115 LIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEE 158
           +    +VPV  + +E V +A    + +   F+N VL  ++R  E
Sbjct: 95  IKYMDNVPVSAVCNEGVKLAEKRKFRNLKGFVNGVLRNIARNIE 138


>gi|310828894|ref|YP_003961251.1| hypothetical protein ELI_3326 [Eubacterium limosum KIST612]
 gi|308740628|gb|ADO38288.1| hypothetical protein ELI_3326 [Eubacterium limosum KIST612]
          Length = 441

 Score = 84.8 bits (209), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 30/143 (20%), Positives = 57/143 (39%), Gaps = 14/143 (9%)

Query: 20  RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79
           R  AV+ L            +  E   Y      ++  E+ Y   D   +  I++G +  
Sbjct: 4   REQAVKTL----------LRVSRE-GAYSNLETKKVLGENHYKEEDRGLYLNIVYGTLQN 52

Query: 80  KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139
           K ++D L+   +++    ++LD  +  ILR  V ++     +P    ++E V I      
Sbjct: 53  KLYLDYLLKKHISK--DLNKLDPEVLEILRIAVYQIYFLDKIPSYAAVNESVEITGRI-K 109

Query: 140 GDEPKFINAVLDKVSRKEEIKRS 162
                F+N VL  + R +E   +
Sbjct: 110 PKARGFVNGVLRNILRSKETDEA 132


>gi|310642738|ref|YP_003947496.1| ribosomal RNA small subunit methyltransferase b [Paenibacillus
           polymyxa SC2]
 gi|309247688|gb|ADO57255.1| Ribosomal RNA small subunit methyltransferase B [Paenibacillus
           polymyxa SC2]
          Length = 471

 Score = 84.4 bits (208), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 31/147 (21%), Positives = 60/147 (40%), Gaps = 13/147 (8%)

Query: 15  RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74
           R+  AR  A+  L      G       S +E  R         ++     D+     +++
Sbjct: 23  RKQTAREVALDVL-----TGVEQEGAYSNFELNRRLQ------QAGLSASDVGLTTELVY 71

Query: 75  GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134
           G + R+  +D  ++  + +    ++L   + S+LR  V +L+    VP   ++SE V IA
Sbjct: 72  GTVARRNTLDYFLNKFVQKG--TAKLQPWVRSLLRMSVYQLVYLDRVPDHAVVSEAVTIA 129

Query: 135 HDFFYGDEPKFINAVLDKVSRKEEIKR 161
               +      +N VL  + R+ +  R
Sbjct: 130 KRRGHQGISGMVNGVLRSMLREPDKLR 156


>gi|313157987|gb|EFR57393.1| conserved hypothetical protein [Alistipes sp. HGB5]
          Length = 311

 Score = 84.4 bits (208), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 28/129 (21%), Positives = 47/129 (36%), Gaps = 5/129 (3%)

Query: 40  IISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSR 99
           I+      R                D ++ R +    +         I    T  W   R
Sbjct: 181 ILRSLSNLRPTHTELKVPAKFKSDEDPQFVRTLFEKSLVNYDSYQDYIEKF-TSNWDVER 239

Query: 100 LDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVS----R 155
           +  +   I+   + EL    S+PV+V + EY+ I+  +       FIN VLDK+      
Sbjct: 240 IVFMDNLIIGTAMAELTSFPSIPVKVTLDEYIEISKYYSTPGSSTFINGVLDKIVDSLTA 299

Query: 156 KEEIKRSGC 164
           +  IK++G 
Sbjct: 300 EGRIKKAGR 308


>gi|331086043|ref|ZP_08335126.1| ribosomal RNA small subunit methyltransferase B [Lachnospiraceae
           bacterium 9_1_43BFAA]
 gi|330406966|gb|EGG86471.1| ribosomal RNA small subunit methyltransferase B [Lachnospiraceae
           bacterium 9_1_43BFAA]
          Length = 452

 Score = 84.4 bits (208), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 21/104 (20%), Positives = 46/104 (44%), Gaps = 2/104 (1%)

Query: 55  LDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLE 114
           L+        +  +   ++ G ++R   ID +I+         +++  ++ +ILR+ V +
Sbjct: 33  LEKYQYLDKKERAFITRVVEGTLERMIEIDYIINQF--SNVKVNKMKPVIRTILRSAVYQ 90

Query: 115 LIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEE 158
           L     VP   + +E V +A    +     F+N VL  ++R  +
Sbjct: 91  LKYMDGVPDSAVCNEAVKLAEKKGFRSLKGFVNGVLRTIARNMD 134


>gi|260887300|ref|ZP_05898563.1| ribosomal RNA small subunit methyltransferase B [Selenomonas
           sputigena ATCC 35185]
 gi|330838946|ref|YP_004413526.1| sun protein [Selenomonas sputigena ATCC 35185]
 gi|260862936|gb|EEX77436.1| ribosomal RNA small subunit methyltransferase B [Selenomonas
           sputigena ATCC 35185]
 gi|329746710|gb|AEC00067.1| sun protein [Selenomonas sputigena ATCC 35185]
          Length = 443

 Score = 84.4 bits (208), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 28/141 (19%), Positives = 55/141 (39%), Gaps = 13/141 (9%)

Query: 18  IARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVM 77
            AR  A++AL++++  G      ++                +    VD  +   + +G  
Sbjct: 3   KARETALKALHEVNEKGAYANVALARSLR-----------AAKLSEVDRRFATELAYGAA 51

Query: 78  DRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDF 137
                +D ++   L      S++  ++  ILR G+ +L     VP     +  V +    
Sbjct: 52  KAGGTLDWILRRYLNR--PLSKIPPMVRDILRLGIYQLFFLARVPASAACNTAVEMTKRC 109

Query: 138 FYGDEPKFINAVLDKVSRKEE 158
            +    KF+NAVL   +R+ E
Sbjct: 110 SHAGTVKFVNAVLRTAAREPE 130


>gi|88608227|ref|YP_506746.1| putative N utilization substance protein B [Neorickettsia sennetsu
           str. Miyayama]
 gi|88600396|gb|ABD45864.1| putative N utilization substance protein B [Neorickettsia sennetsu
           str. Miyayama]
          Length = 141

 Score = 84.4 bits (208), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 37/149 (24%), Positives = 66/149 (44%), Gaps = 8/149 (5%)

Query: 12  LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71
           +   + +ARL +++  Y         +E+IS           EL         DLE    
Sbjct: 1   MPSEKRVARLLSIEVCYSSYFSDLPQSELIS--------RALELQEMPYMKRYDLELLNS 52

Query: 72  IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
           I+   +   +    LI   L+E+W  +R+D +  S+LR  + EL         ++I+EYV
Sbjct: 53  ILDLCLANVEADTELIGRFLSEEWEINRIDNLKLSLLRVAISELRLSSVGQRNLVINEYV 112

Query: 132 CIAHDFFYGDEPKFINAVLDKVSRKEEIK 160
            +   F    E  F+NA+L+K++ + + K
Sbjct: 113 SLGGLFLSVKEVGFVNAILEKLASEIQGK 141


>gi|124021724|ref|YP_001016031.1| transcription antitermination protein NusB [Prochlorococcus marinus
           str. MIT 9303]
 gi|123962010|gb|ABM76766.1| Antitermination protein NusB [Prochlorococcus marinus str. MIT
           9303]
          Length = 211

 Score = 84.0 bits (207), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 25/81 (30%), Positives = 39/81 (48%), Gaps = 2/81 (2%)

Query: 73  IHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVC 132
           +  V++++  ID  I   + E W  SRL  I   ILR  V++L      P  V  +E V 
Sbjct: 124 VRLVIEKRNSIDASID-AVMEGWRLSRLPRIDRDILRLAVVDLT-ALQTPSAVACNEAVE 181

Query: 133 IAHDFFYGDEPKFINAVLDKV 153
           +AH +      + IN VL ++
Sbjct: 182 LAHRYSDDQGRRMINGVLRRL 202


>gi|284047695|ref|YP_003398034.1| sun protein [Acidaminococcus fermentans DSM 20731]
 gi|283951916|gb|ADB46719.1| sun protein [Acidaminococcus fermentans DSM 20731]
          Length = 446

 Score = 84.0 bits (207), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 27/149 (18%), Positives = 59/149 (39%), Gaps = 15/149 (10%)

Query: 10  LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF 69
           +K + +    R AA+  L QI + G      + +               +    +D +  
Sbjct: 1   MKGTAK--NPREAALLILEQIFLRGAYANLALDQGLR-----------GATLSPLDRKLT 47

Query: 70  RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISE 129
             +++G +     +D  +S  +       +LD ++  ILR G  +L+    +P     +E
Sbjct: 48  TELVYGTVKTMGTLDWYLSRVVNR--PLRKLDPLVLVILRLGAYQLLYLDRIPASAACNE 105

Query: 130 YVCIAHDFFYGDEPKFINAVLDKVSRKEE 158
            V +A  + +    K +N  L +++R  +
Sbjct: 106 SVKLAKKWVHEGAGKLVNGALRQLARTRD 134


>gi|218778410|ref|YP_002429728.1| sun protein [Desulfatibacillum alkenivorans AK-01]
 gi|218759794|gb|ACL02260.1| sun protein [Desulfatibacillum alkenivorans AK-01]
          Length = 455

 Score = 84.0 bits (207), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 35/147 (23%), Positives = 63/147 (42%), Gaps = 12/147 (8%)

Query: 10  LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF 69
           +K    +  +R+ A + L +++  G    +++          D  LD E      D    
Sbjct: 1   MKPPAGKDKSRITAARILDRLE-SGDQVLDVV---------LDRALDKEPGLTRKDRALV 50

Query: 70  RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISE 129
             +++GV+  +  ID +ISS    K    ++   + +ILR GV +L+    VP  + +  
Sbjct: 51  MALVYGVLRNRGRIDWIISSFSKTK--LKKIQPEILNILRMGVFQLLFLDRVPPALAVDS 108

Query: 130 YVCIAHDFFYGDEPKFINAVLDKVSRK 156
            V +A         KF+N +L  V RK
Sbjct: 109 SVEMAKKAAPVFVSKFVNGLLRNVERK 135


>gi|78186474|ref|YP_374517.1| Fmu, rRNA SAM-dependent methyltransferase [Chlorobium luteolum DSM
           273]
 gi|78166376|gb|ABB23474.1| Fmu, rRNA SAM-dependent methyltransferase [Chlorobium luteolum DSM
           273]
          Length = 442

 Score = 84.0 bits (207), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 30/140 (21%), Positives = 54/140 (38%), Gaps = 13/140 (9%)

Query: 17  GIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGV 76
             AR  A   L Q++     +  ++ E               S     D      +  GV
Sbjct: 2   TSARELAFNILQQLEAGTRHSDSLLHELLE-----------ASSLKGPDRALATALTSGV 50

Query: 77  MDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHD 136
           + ++  +D +I+   +      +    + +ILR GV +L+    VP    ++E V +A  
Sbjct: 51  LRQRLQLDFIIAKFYSH--DIQKASPAVLNILRLGVWQLLFLDRVPRWAAVNECVRLARR 108

Query: 137 FFYGDEPKFINAVLDKVSRK 156
           +      K  NAVL K+S +
Sbjct: 109 YKGERMSKLTNAVLRKISPE 128


>gi|162447338|ref|YP_001620470.1| transcription antitermination factor [Acholeplasma laidlawii PG-8A]
 gi|161985445|gb|ABX81094.1| transcription antitermination factor [Acholeplasma laidlawii PG-8A]
          Length = 126

 Score = 84.0 bits (207), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 24/90 (26%), Positives = 56/90 (62%), Gaps = 5/90 (5%)

Query: 70  RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISE 129
           + +I+G++D  +H+D LISS + + ++  RL+++  +I+R  V  L++    P E++I+E
Sbjct: 37  KEVINGMIDELEHVDFLISSTI-KNYTIDRLNLVDLAIIRVAVYALLKEID-PAEIVINE 94

Query: 130 YVCIAHDFF---YGDEPKFINAVLDKVSRK 156
            + ++ ++       + KF N+++D + +K
Sbjct: 95  AIELSKEYTDLDDEKQHKFNNSLIDNIYKK 124


>gi|325662242|ref|ZP_08150857.1| ribosomal RNA small subunit methyltransferase B [Lachnospiraceae
           bacterium 4_1_37FAA]
 gi|325471494|gb|EGC74715.1| ribosomal RNA small subunit methyltransferase B [Lachnospiraceae
           bacterium 4_1_37FAA]
          Length = 452

 Score = 84.0 bits (207), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 21/104 (20%), Positives = 46/104 (44%), Gaps = 2/104 (1%)

Query: 55  LDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLE 114
           L+        +  +   ++ G ++R   ID +I+         +++  ++ +ILR+ V +
Sbjct: 33  LEKYQYLDKKERAFITRVVEGTLERMIEIDYIINQF--SNVKVNKMKPVIRTILRSAVYQ 90

Query: 115 LIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEE 158
           L     VP   + +E V +A    +     F+N VL  ++R  +
Sbjct: 91  LKYMDGVPDSAVCNEAVKLAEKKGFRSLKGFVNGVLRTIARNMD 134


>gi|163790822|ref|ZP_02185247.1| Sun protein [Carnobacterium sp. AT7]
 gi|159873890|gb|EDP67969.1| Sun protein [Carnobacterium sp. AT7]
          Length = 458

 Score = 84.0 bits (207), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 36/155 (23%), Positives = 66/155 (42%), Gaps = 19/155 (12%)

Query: 2   TIQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVY 61
             +  K+++K +     +R  A+  L           E   +  +Y      E   ++  
Sbjct: 4   NQEPQKRNVKKT-----SRYLAMSIL-----------ERTDKTGSYSNLLINEAIQKNKL 47

Query: 62  LHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSV 121
              D      +++GV+ RK  +D  +SS L E     ++D+ + ++LR  + ++I    +
Sbjct: 48  SAADARLLTELVYGVLQRKLTLDFYLSSFLAED---KKIDIWVRNLLRLSIYQMIYLDKI 104

Query: 122 PVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRK 156
           PV  I+ E V +A    +    KFIN VL    RK
Sbjct: 105 PVHAILFEAVEVAKKKGHIGISKFINGVLRNADRK 139


>gi|229918581|ref|YP_002887227.1| sun protein [Exiguobacterium sp. AT1b]
 gi|229470010|gb|ACQ71782.1| sun protein [Exiguobacterium sp. AT1b]
          Length = 443

 Score = 83.6 bits (206), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 33/138 (23%), Positives = 56/138 (40%), Gaps = 15/138 (10%)

Query: 20  RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79
           R AA+  L +I+  G            Y   A  +   +      D+  +  +++G + R
Sbjct: 4   REAALDTLMKIEQGG-----------AYSTIAVNDTLKQKKVAPKDVGLYTELVYGTLSR 52

Query: 80  KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139
           K  +D ++        S  +LD  +  +LR  V +L     VP   ++ E V IA    +
Sbjct: 53  KGTLDYILK---DRIRSPKKLDKFVLPLLRMSVYQLFYLDKVPDRAVLHEAVEIAKKRGH 109

Query: 140 GDE-PKFINAVLDKVSRK 156
                KF+N VL  V R+
Sbjct: 110 HLGTSKFVNGVLRNVLRE 127


>gi|15895002|ref|NP_348351.1| rRNA methylase [Clostridium acetobutylicum ATCC 824]
 gi|15024692|gb|AAK79691.1|AE007682_1 Predicted rRNA methylase, SUN family [Clostridium acetobutylicum
           ATCC 824]
 gi|325509139|gb|ADZ20775.1| rRNA methylase, SUN family [Clostridium acetobutylicum EA 2018]
          Length = 441

 Score = 83.6 bits (206), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 24/95 (25%), Positives = 44/95 (46%), Gaps = 2/95 (2%)

Query: 65  DLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVE 124
           D      I++G +  K  ID++IS  +  K   +++D  + ++LR  + ++     +P  
Sbjct: 39  DKGLVTEIVYGTIKYKYSIDIIISKFVKTK--INKIDKRVLNVLRMSIYQIRYLDKIPDF 96

Query: 125 VIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEI 159
             ++E V I   +      KF+NAVL    R   I
Sbjct: 97  AAVNEAVNITKKYISLKSSKFVNAVLRNYLRNPNI 131


>gi|257126675|ref|YP_003164789.1| NusB antitermination factor [Leptotrichia buccalis C-1013-b]
 gi|257050614|gb|ACV39798.1| NusB antitermination factor [Leptotrichia buccalis C-1013-b]
          Length = 138

 Score = 83.6 bits (206), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 26/146 (17%), Positives = 70/146 (47%), Gaps = 12/146 (8%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           R   R    + L++ ++I  +  + I++           ++ E++  + ++++ R  +  
Sbjct: 3   RREIREEIFKLLFEHELIDNNIEKRINDV----------INEENLKKNDEIDFLRSYVTE 52

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
           +++ +  +   I + L   W++ RL  I   +L+    E+    ++  E+ I+E + IA 
Sbjct: 53  IIENENILIEKIKNILD-GWTYERLGTIEKVLLKISFYEIT-IKNIGYEIAINEVLEIAK 110

Query: 136 DFFYGDEPKFINAVLDKVSRKEEIKR 161
            + Y D  +F+N +L K+ +  + ++
Sbjct: 111 KYSYNDTKEFLNGILAKLVKDIKEEQ 136


>gi|182420429|ref|ZP_02951648.1| ribosomal RNA small subunit methyltransferase B [Clostridium
           butyricum 5521]
 gi|237668664|ref|ZP_04528648.1| ribosomal RNA small subunit methyltransferase B [Clostridium
           butyricum E4 str. BoNT E BL5262]
 gi|182375715|gb|EDT73315.1| ribosomal RNA small subunit methyltransferase B [Clostridium
           butyricum 5521]
 gi|237657012|gb|EEP54568.1| ribosomal RNA small subunit methyltransferase B [Clostridium
           butyricum E4 str. BoNT E BL5262]
          Length = 438

 Score = 83.6 bits (206), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 28/139 (20%), Positives = 57/139 (41%), Gaps = 15/139 (10%)

Query: 20  RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79
           R  AV+ L            +++E          EL+ E      D      I++GV+ R
Sbjct: 4   RKLAVKIL----------NRVLNEGAYSNIILSKELN-EVELNDKDKALLTEIVYGVLRR 52

Query: 80  KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139
           K+ +D++I++ +        +D  + +ILR  + ++     +P     +E V  A +   
Sbjct: 53  KRTLDVIIANFVK---DIKLMDKNILNILRVAIYQMNFLDKIPTYAACNEAVEEAKEISE 109

Query: 140 GDEPKFINAVLDKVSRKEE 158
            D  K +N +L   ++  +
Sbjct: 110 NDS-KLVNGILRSFTKNPD 127


>gi|328957299|ref|YP_004374685.1| ribosomal RNA small subunit methyltransferase B [Carnobacterium sp.
           17-4]
 gi|328673623|gb|AEB29669.1| ribosomal RNA small subunit methyltransferase B [Carnobacterium sp.
           17-4]
          Length = 458

 Score = 83.6 bits (206), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 34/155 (21%), Positives = 63/155 (40%), Gaps = 19/155 (12%)

Query: 2   TIQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVY 61
                K+++K +     +R  A+  L           E   +  +Y      E   ++  
Sbjct: 4   NQTPEKRNVKKT-----SRYLAMSIL-----------ERTDKTGSYSNLLINEAIQKNKL 47

Query: 62  LHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSV 121
              D      +++GV+ RK  +D  +S  L E     ++D+ + ++LR  + ++I    +
Sbjct: 48  SAADARLLTELVYGVLQRKLTLDFYLSPFLNED---KKIDIWVRNLLRLSIYQMIYLDKI 104

Query: 122 PVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRK 156
           PV  I+ E V +A    +    KFIN VL    R 
Sbjct: 105 PVHAILFEAVEVAKKKGHVGISKFINGVLRNADRN 139


>gi|163941603|ref|YP_001646487.1| sun protein [Bacillus weihenstephanensis KBAB4]
 gi|163863800|gb|ABY44859.1| sun protein [Bacillus weihenstephanensis KBAB4]
          Length = 444

 Score = 83.6 bits (206), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 26/141 (18%), Positives = 55/141 (39%), Gaps = 16/141 (11%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           R   R  A+  L Q++  G  +  ++             L  ++     D+     +++G
Sbjct: 2   RQNVRELALDGLIQVEKSGAYSNLLL-----------NNLIEKNTIDRKDIGLLTEMVYG 50

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
            + R+  +D  +   L +K     ++  +  +LR  + +++    VP    I E V IA 
Sbjct: 51  TIQRRDTLDYYLQPFLRKK-----VEAWVRVLLRLSLYQMLYLDRVPERAAIHEAVEIAK 105

Query: 136 DFFYGDEPKFINAVLDKVSRK 156
              +      +N VL  + R+
Sbjct: 106 RRGHKGISGMVNGVLRSIQRE 126


>gi|116747600|ref|YP_844287.1| sun protein [Syntrophobacter fumaroxidans MPOB]
 gi|116696664|gb|ABK15852.1| sun protein [Syntrophobacter fumaroxidans MPOB]
          Length = 449

 Score = 83.6 bits (206), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 27/138 (19%), Positives = 52/138 (37%), Gaps = 12/138 (8%)

Query: 19  ARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMD 78
           AR+ A Q L  +D        +I             L         D      +++GV+ 
Sbjct: 4   ARVLAFQILLHMDRDASHPDRLIRGM----------LGRHERLEERDRALLTELVYGVLR 53

Query: 79  RKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFF 138
            +  +D  I   L+      ++D  +  +LR  + +++    +P    ++E V +A    
Sbjct: 54  WQGRLDWHIDQ-LSRTRP-EKIDPAVRILLRLALYQILMLDRIPDHAAVNEAVNMAKTTQ 111

Query: 139 YGDEPKFINAVLDKVSRK 156
                KF+N VL +  R+
Sbjct: 112 PAYLVKFVNGVLREALRR 129


>gi|225569232|ref|ZP_03778257.1| hypothetical protein CLOHYLEM_05314 [Clostridium hylemonae DSM
           15053]
 gi|225162031|gb|EEG74650.1| hypothetical protein CLOHYLEM_05314 [Clostridium hylemonae DSM
           15053]
          Length = 434

 Score = 83.2 bits (205), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 29/128 (22%), Positives = 55/128 (42%), Gaps = 2/128 (1%)

Query: 31  DIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSC 90
           ++I  +  +I  E E         L+           +   +I+G ++    ID +I+  
Sbjct: 9   ELILDTLLQITREGEYCHIALRNVLEKYQYLDKKQRAFITRVINGTLEHLIEIDYIINQF 68

Query: 91  LTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVL 150
              K   +R+  ++ +I+R+GV +L    SVP   + +E V +A    +     F+N VL
Sbjct: 69  --SKVKVNRMKPVIGAIIRSGVYQLKYMDSVPDSAVCNEAVKLAEKRGFASLKAFVNGVL 126

Query: 151 DKVSRKEE 158
             +SR   
Sbjct: 127 RNISRNMN 134


>gi|83319650|ref|YP_424054.1| N utilization substance protein B (nusB), putative [Mycoplasma
           capricolum subsp. capricolum ATCC 27343]
 gi|83283536|gb|ABC01468.1| N utilization substance protein B (nusB), putative [Mycoplasma
           capricolum subsp. capricolum ATCC 27343]
          Length = 132

 Score = 83.2 bits (205), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 30/136 (22%), Positives = 59/136 (43%), Gaps = 14/136 (10%)

Query: 20  RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79
           R   +QA Y+  ++  S   I  +           LD    + +  L +   +I    ++
Sbjct: 11  RKLLIQAFYKYQLLNASIDYIYQDV----------LDDVQNFNNKQLLFEINLI---AEK 57

Query: 80  KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139
           +  +   I+  ++  W + R+  ++ +IL  G  E++     P  V I+E V    +   
Sbjct: 58  QVDLINHININISSNWKWDRIPAVIRAILIVGTYEILYT-DTPKPVTINEMVNYVKEIEP 116

Query: 140 GDEPKFINAVLDKVSR 155
             + KF+NAVLDK+ +
Sbjct: 117 DFDYKFVNAVLDKIIK 132


>gi|315646179|ref|ZP_07899299.1| sun protein [Paenibacillus vortex V453]
 gi|315278378|gb|EFU41694.1| sun protein [Paenibacillus vortex V453]
          Length = 460

 Score = 83.2 bits (205), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 26/157 (16%), Positives = 62/157 (39%), Gaps = 18/157 (11%)

Query: 1   MTIQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESV 60
           M+   N K  + S      R  A+  L Q++  G  +  +++               ++ 
Sbjct: 1   MSGNRNPKGRQESP-----RELAMNVLTQVEQEGAYSNLLLNSALQ-----------KAS 44

Query: 61  YLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHS 120
               D      +I+G + R   +D  +   + +    ++L   + ++LR  + +++    
Sbjct: 45  LSKSDAGLATELIYGTISRLNTLDYFLDRYVNKG--VAKLQPWVRALLRMSLYQVVYLDR 102

Query: 121 VPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKE 157
           +P   ++SE V +A    +      +N VL  + R++
Sbjct: 103 IPDHAVVSEAVNLAKRRGHQGISGMVNGVLRNILRQK 139


>gi|253580147|ref|ZP_04857414.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA]
 gi|251848666|gb|EES76629.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA]
          Length = 450

 Score = 82.8 bits (204), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 30/139 (21%), Positives = 54/139 (38%), Gaps = 16/139 (11%)

Query: 20  RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79
           R   +Q L           EI  E +         L         +  +   +  G ++ 
Sbjct: 8   RELILQIL----------LEIEEEGKHSHIAIRNALSKYQFLPRQERAFITRVCEGTLEY 57

Query: 80  KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA--HDF 137
           +  ID +I S    K S  ++  ++  ILR+ V ++    SVP   + +E V +A    F
Sbjct: 58  RILIDYIIDSY--SKVSVDKMKPVIREILRSAVYQIRFMDSVPDSAVCNEAVKLAQRKGF 115

Query: 138 FYGDEPKFINAVLDKVSRK 156
           +      F+N VL  ++R+
Sbjct: 116 YSLK--PFVNGVLRTIARE 132


>gi|222054190|ref|YP_002536552.1| sun protein [Geobacter sp. FRC-32]
 gi|221563479|gb|ACM19451.1| sun protein [Geobacter sp. FRC-32]
          Length = 448

 Score = 82.8 bits (204), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 31/123 (25%), Positives = 54/123 (43%), Gaps = 6/123 (4%)

Query: 39  EIISEYETYRFCADTELDVE---SVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKW 95
           EI+   +  R  AD  +D E         D      +++GV+ R+  +D +I    ++  
Sbjct: 12  EILLRIDKERSYADILIDRELSAGALQGPDRGLLTELVYGVLRRQATLDHIIRRFSSQ-- 69

Query: 96  SFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSR 155
              RL+  +  +LR G+ ++     VPV   ++E V +A          FINAVL    R
Sbjct: 70  RLERLERSVLLLLRIGLYQMFYLDRVPVSAAVNETVKLAKVLV-PRASGFINAVLRNADR 128

Query: 156 KEE 158
           + +
Sbjct: 129 ERD 131


>gi|323487019|ref|ZP_08092331.1| ribosomal RNA small subunit methyltransferase B [Clostridium
           symbiosum WAL-14163]
 gi|323399667|gb|EGA92053.1| ribosomal RNA small subunit methyltransferase B [Clostridium
           symbiosum WAL-14163]
          Length = 444

 Score = 82.8 bits (204), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 21/120 (17%), Positives = 51/120 (42%), Gaps = 2/120 (1%)

Query: 39  EIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFS 98
           E++ + +         L         D  + + ++ G ++ +  +D +++S    K   +
Sbjct: 18  EVLEKGKYSHVILSQALTKYQYLEKQDRSFIKRVVDGTVEYRIQLDYILNSY--SKVKVN 75

Query: 99  RLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEE 158
           ++  ++ +ILR    ++     VP     +E V +A    +     F+N VL  +SR ++
Sbjct: 76  KMKPVIRTILRMSAYQICHMDRVPDSAACNEAVKLAEKRGFSGLKGFVNGVLRSISRGKD 135


>gi|308177500|ref|YP_003916906.1| transcription antitermination factor NusB [Arthrobacter
           arilaitensis Re117]
 gi|307744963|emb|CBT75935.1| transcription antitermination factor NusB [Arthrobacter
           arilaitensis Re117]
          Length = 136

 Score = 82.8 bits (204), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 32/127 (25%), Positives = 56/127 (44%), Gaps = 14/127 (11%)

Query: 27  LYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLL 86
           L++ +    +   +     + R  +D  L+          E+   II GVM     ID +
Sbjct: 15  LFEAEARDVNPLAVA---ISRRENSDIVLN----------EYSLTIIEGVMAHLDRIDEV 61

Query: 87  ISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFI 146
           + S   + W+  R+  +  S LR GV EL+    VP  V ++E V    +    + P+F+
Sbjct: 62  LESY-VKDWTIERMPAVDRSALRIGVWELLYNDDVPDAVAVAEAVVNVRELSTDESPEFV 120

Query: 147 NAVLDKV 153
           N VL ++
Sbjct: 121 NGVLGRI 127


>gi|254797209|ref|YP_003082050.1| putative N utilization substance protein B [Neorickettsia risticii
           str. Illinois]
 gi|254590448|gb|ACT69810.1| putative N utilization substance protein B [Neorickettsia risticii
           str. Illinois]
          Length = 141

 Score = 82.5 bits (203), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 37/149 (24%), Positives = 63/149 (42%), Gaps = 8/149 (5%)

Query: 12  LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71
           +   + +ARL +++  Y          E+IS           EL         DL     
Sbjct: 1   MPSEKRVARLLSIEVCYSSYFSDLPQPELIS--------RALELQEVPYMRRYDLGLLNS 52

Query: 72  IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
           I+       +    LI   L+E+W   R+D +  S+LR  + EL   +     ++I+EYV
Sbjct: 53  ILGLCFANIKADTELIGRFLSEEWEIDRMDNLKLSLLRVAISELRLSNIAQKNLVINEYV 112

Query: 132 CIAHDFFYGDEPKFINAVLDKVSRKEEIK 160
            +   F    E  FINA+L+K++ + + K
Sbjct: 113 SLGRLFLPVKEVGFINAILEKLTSEIQGK 141


>gi|237795946|ref|YP_002863498.1| ribosomal RNA small subunit methyltransferase B [Clostridium
           botulinum Ba4 str. 657]
 gi|229261794|gb|ACQ52827.1| ribosomal RNA small subunit methyltransferase B [Clostridium
           botulinum Ba4 str. 657]
          Length = 442

 Score = 82.5 bits (203), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 28/143 (19%), Positives = 55/143 (38%), Gaps = 14/143 (9%)

Query: 19  ARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMD 78
           AR  A+  L  +   G  +  ++S+        D            D      I++G + 
Sbjct: 4   AREVALDVLKAVLFEGAYSNIVLSKKLNKSNLKDN-----------DKALITEIVYGTLK 52

Query: 79  RKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFF 138
            K+ +D++I S L        +D  + +ILR  + ++     +P    ++E V ++    
Sbjct: 53  YKETLDIIIQSYLRN--PIKTMDKNIINILRITIYQIRYLDKIPSFAAVNEAVEMSKKIS 110

Query: 139 YGDEPKFINAVLDKVSRKEEIKR 161
                K +N VL    R  + K+
Sbjct: 111 IKYS-KLVNGVLRNYIRTYKNKK 132


>gi|226949860|ref|YP_002804951.1| ribosomal RNA small subunit methyltransferase B [Clostridium
           botulinum A2 str. Kyoto]
 gi|226843504|gb|ACO86170.1| ribosomal RNA small subunit methyltransferase B [Clostridium
           botulinum A2 str. Kyoto]
          Length = 442

 Score = 82.5 bits (203), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 28/143 (19%), Positives = 55/143 (38%), Gaps = 14/143 (9%)

Query: 19  ARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMD 78
           AR  A+  L  +   G  +  ++S+        D            D      I++G + 
Sbjct: 4   AREVALDVLKAVLFEGAYSNIVLSKKLNKSNLKDN-----------DKALITEIVYGTLK 52

Query: 79  RKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFF 138
            K+ +D++I S L        +D  + +ILR  + ++     +P    ++E V ++    
Sbjct: 53  YKETLDIIIQSYLRN--PIKTMDKNIVNILRITIYQIRYLDKIPSFAAVNEAVEMSKKIS 110

Query: 139 YGDEPKFINAVLDKVSRKEEIKR 161
                K +N VL    R  + K+
Sbjct: 111 IKYS-KLVNGVLRNYIRTYKNKK 132


>gi|188588047|ref|YP_001920563.1| ribosomal RNA small subunit methyltransferase B [Clostridium
           botulinum E3 str. Alaska E43]
 gi|251779411|ref|ZP_04822331.1| ribosomal RNA small subunit methyltransferase B [Clostridium
           botulinum E1 str. 'BoNT E Beluga']
 gi|188498328|gb|ACD51464.1| ribosomal RNA small subunit methyltransferase B [Clostridium
           botulinum E3 str. Alaska E43]
 gi|243083726|gb|EES49616.1| ribosomal RNA small subunit methyltransferase B [Clostridium
           botulinum E1 str. 'BoNT E Beluga']
          Length = 438

 Score = 82.5 bits (203), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 31/139 (22%), Positives = 56/139 (40%), Gaps = 15/139 (10%)

Query: 20  RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79
           R  AV+ L            +I E          EL+ E+     D      I++GV+ R
Sbjct: 4   RNLAVKIL----------KRVIDEGAYSNIILSNELN-EANLEERDKALLTEIVYGVLRR 52

Query: 80  KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139
           K+ +DL+I++ +        +D  + +ILR  + ++     VP     +E V  A     
Sbjct: 53  KKTLDLIIANFVR---DIKLMDHEVLNILRVAIYQMTFLDKVPTYAACNEAVDEAKKIS- 108

Query: 140 GDEPKFINAVLDKVSRKEE 158
            +  K +N +L   S+  +
Sbjct: 109 PEAGKLVNGILRNFSKDPD 127


>gi|153938943|ref|YP_001391803.1| ribosomal RNA small subunit methyltransferase B [Clostridium
           botulinum F str. Langeland]
 gi|152934839|gb|ABS40337.1| ribosomal RNA small subunit methyltransferase B [Clostridium
           botulinum F str. Langeland]
          Length = 442

 Score = 82.5 bits (203), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 28/143 (19%), Positives = 55/143 (38%), Gaps = 14/143 (9%)

Query: 19  ARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMD 78
           AR  A+  L  +   G  +  ++S+        D            D      I++G + 
Sbjct: 4   AREVALDVLKAVLFEGAYSNIVLSKKLNKSNLKDN-----------DKALITEIVYGTLK 52

Query: 79  RKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFF 138
            K+ +D++I S L        +D  + +ILR  + ++     +P    ++E V ++    
Sbjct: 53  YKETLDIIIQSYLRN--PIKTMDKNIVNILRITIYQIRYLDKIPSFAAVNEAVEMSKKIS 110

Query: 139 YGDEPKFINAVLDKVSRKEEIKR 161
                K +N VL    R  + K+
Sbjct: 111 IKYS-KLVNGVLRNYIRTYKNKK 132


>gi|148380461|ref|YP_001255002.1| ribosomal RNA small subunit methyltransferase B [Clostridium
           botulinum A str. ATCC 3502]
 gi|153931256|ref|YP_001384684.1| ribosomal RNA small subunit methyltransferase B [Clostridium
           botulinum A str. ATCC 19397]
 gi|153936344|ref|YP_001388205.1| ribosomal RNA small subunit methyltransferase B [Clostridium
           botulinum A str. Hall]
 gi|168180610|ref|ZP_02615274.1| ribosomal RNA small subunit methyltransferase B [Clostridium
           botulinum NCTC 2916]
 gi|170756128|ref|YP_001782050.1| ribosomal RNA small subunit methyltransferase B [Clostridium
           botulinum B1 str. Okra]
 gi|148289945|emb|CAL84058.1| putative ribosomal RNA methyltransferase [Clostridium botulinum A
           str. ATCC 3502]
 gi|152927300|gb|ABS32800.1| ribosomal RNA small subunit methyltransferase B [Clostridium
           botulinum A str. ATCC 19397]
 gi|152932258|gb|ABS37757.1| ribosomal RNA small subunit methyltransferase B [Clostridium
           botulinum A str. Hall]
 gi|169121340|gb|ACA45176.1| ribosomal RNA small subunit methyltransferase B [Clostridium
           botulinum B1 str. Okra]
 gi|182668623|gb|EDT80602.1| ribosomal RNA small subunit methyltransferase B [Clostridium
           botulinum NCTC 2916]
          Length = 442

 Score = 82.5 bits (203), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 28/143 (19%), Positives = 55/143 (38%), Gaps = 14/143 (9%)

Query: 19  ARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMD 78
           AR  A+  L  +   G  +  ++S+        D            D      I++G + 
Sbjct: 4   AREVALDVLKAVLFEGAYSNIVLSKKLNKSNLKDN-----------DKALITEIVYGTLK 52

Query: 79  RKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFF 138
            K+ +D++I S L        +D  + +ILR  + ++     +P    ++E V ++    
Sbjct: 53  YKETLDIIIQSYLRN--PIKTMDKNIVNILRITIYQIRYLDKIPSFAAVNEAVEMSKKIS 110

Query: 139 YGDEPKFINAVLDKVSRKEEIKR 161
                K +N VL    R  + K+
Sbjct: 111 IKYS-KLVNGVLRNYIRTYKNKK 132


>gi|187933697|ref|YP_001885416.1| ribosomal RNA small subunit methyltransferase B [Clostridium
           botulinum B str. Eklund 17B]
 gi|187721850|gb|ACD23071.1| ribosomal RNA small subunit methyltransferase B [Clostridium
           botulinum B str. Eklund 17B]
          Length = 438

 Score = 82.5 bits (203), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 31/139 (22%), Positives = 56/139 (40%), Gaps = 15/139 (10%)

Query: 20  RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79
           R  AV+ L            +I E          EL+ E+     D      I++GV+ R
Sbjct: 4   RNLAVKIL----------KRVIDEGAYSNIILSNELN-EANLEERDKALLTEIVYGVLRR 52

Query: 80  KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139
           K+ +DL+I++ +        +D  + +ILR  + ++     VP     +E V  A     
Sbjct: 53  KKTLDLIIANFVR---DIKLMDHEVLNILRVAIYQMTFLDKVPTYAACNEAVDEAKKIS- 108

Query: 140 GDEPKFINAVLDKVSRKEE 158
            +  K +N +L   S+  +
Sbjct: 109 PEAGKLVNGILRNFSKDPD 127


>gi|322806774|emb|CBZ04343.1| ribosomal RNA small subunit methyltransferase B [Clostridium
           botulinum H04402 065]
          Length = 442

 Score = 82.5 bits (203), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 28/143 (19%), Positives = 55/143 (38%), Gaps = 14/143 (9%)

Query: 19  ARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMD 78
           AR  A+  L  +   G  +  ++S+        D            D      I++G + 
Sbjct: 4   AREVALDVLKAVLFEGAYSNIVLSKKLNKSNLKDN-----------DKALITEIVYGTLK 52

Query: 79  RKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFF 138
            K+ +D++I S L        +D  + +ILR  + ++     +P    ++E V ++    
Sbjct: 53  YKETLDIIIQSYLRN--PIKTMDKNIVNILRITIYQIRYLDKIPSFAAVNEAVEMSKKIS 110

Query: 139 YGDEPKFINAVLDKVSRKEEIKR 161
                K +N VL    R  + K+
Sbjct: 111 IKYS-KLVNGVLRNYIRTYKNKK 132


>gi|308272081|emb|CBX28689.1| hypothetical protein N47_G40130 [uncultured Desulfobacterium sp.]
          Length = 450

 Score = 82.5 bits (203), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 27/137 (19%), Positives = 57/137 (41%), Gaps = 13/137 (9%)

Query: 20  RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79
           R  A+Q L  +D    +   ++ E++        E              F  +++GV+  
Sbjct: 5   RSLAIQFLNSLDKKKHTLDSLLEEFQNKYILPKRE-----------KALFNALVYGVLRW 53

Query: 80  KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139
           +  +D +I     +     + +  + +ILR G+ ++I  + +PV   ++  V IA     
Sbjct: 54  RSRLDWIIRQFSKQ--PPEKTNTEILNILRIGLFQIIHLNRIPVSAAVNTSVEIAKHTVG 111

Query: 140 GDEPKFINAVLDKVSRK 156
                ++NAVL +  R+
Sbjct: 112 TKCSGYVNAVLRRTVRE 128


>gi|229541137|ref|ZP_04430197.1| sun protein [Bacillus coagulans 36D1]
 gi|229325557|gb|EEN91232.1| sun protein [Bacillus coagulans 36D1]
          Length = 447

 Score = 82.5 bits (203), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 31/144 (21%), Positives = 57/144 (39%), Gaps = 16/144 (11%)

Query: 12  LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71
           +S  R   R AA++ L           E + + E+Y          +  +   D      
Sbjct: 1   MSKERKNVREAALELL-----------EAVEKNESYSNLLLDRYIEKYRFHGPDRALLTE 49

Query: 72  IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
           I +G + RKQ +D  ++  L +K     ++  +  +LR  + +++    +P   II E V
Sbjct: 50  ITYGTLQRKQTLDYFLAPFLRKK-----IENWVRILLRLSLYQMVYLDKIPDRAIIFEAV 104

Query: 132 CIAHDFFYGDEPKFINAVLDKVSR 155
            IA    +      +N VL  + R
Sbjct: 105 EIAKKRGHRGISGIVNGVLRAIQR 128


>gi|83589751|ref|YP_429760.1| sun protein [Moorella thermoacetica ATCC 39073]
 gi|83572665|gb|ABC19217.1| sun protein [Moorella thermoacetica ATCC 39073]
          Length = 457

 Score = 82.5 bits (203), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 26/141 (18%), Positives = 54/141 (38%), Gaps = 13/141 (9%)

Query: 19  ARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMD 78
           AR AA+Q +Y+           ++E   Y   A  E+   +     +      + +  + 
Sbjct: 10  AREAALQVIYR-----------VTEEGAYAGLALDEVLKSAGLDGRERALATELAYSAIK 58

Query: 79  RKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFF 138
               +D  +   L +     +L   +  +LR G  +L+    +P    I E V +A  + 
Sbjct: 59  AWGTLDWALGLFLRQ--PLEKLPPWIRCVLRLGATQLLYVPRIPPRAAIYETVELAKKYG 116

Query: 139 YGDEPKFINAVLDKVSRKEEI 159
           +      +N VL  + R+++ 
Sbjct: 117 HRGTTGLVNGVLRHLDRQKDA 137


>gi|170758272|ref|YP_001787822.1| ribosomal RNA small subunit methyltransferase B [Clostridium
           botulinum A3 str. Loch Maree]
 gi|169405261|gb|ACA53672.1| ribosomal RNA small subunit methyltransferase B [Clostridium
           botulinum A3 str. Loch Maree]
          Length = 442

 Score = 82.5 bits (203), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 28/143 (19%), Positives = 55/143 (38%), Gaps = 14/143 (9%)

Query: 19  ARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMD 78
           AR  A+  L  +   G  +  ++S+        D            D      I++G + 
Sbjct: 4   AREVALDVLKAVLFEGAYSNIVLSKKLNKSNLKDN-----------DKALITEIVYGTLK 52

Query: 79  RKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFF 138
            K+ +D++I S L        +D  + +ILR  + ++     +P    ++E V ++    
Sbjct: 53  YKETLDIIIQSYLRN--PIKTMDKNIVNILRITIYQIRYLDKIPSFAAVNEAVEMSKKIS 110

Query: 139 YGDEPKFINAVLDKVSRKEEIKR 161
                K +N VL    R  + K+
Sbjct: 111 IKYS-KLVNGVLRNYIRTYKNKK 132


>gi|323692061|ref|ZP_08106308.1| sun protein [Clostridium symbiosum WAL-14673]
 gi|323503861|gb|EGB19676.1| sun protein [Clostridium symbiosum WAL-14673]
          Length = 449

 Score = 82.5 bits (203), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 21/120 (17%), Positives = 51/120 (42%), Gaps = 2/120 (1%)

Query: 39  EIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFS 98
           E++ + +         L         D  + + ++ G ++ +  +D +++S    K   +
Sbjct: 23  EVLEKGKYSHVILSQALTKYQYLEKQDRSFIKRVVDGTVEYRIQLDYILNSY--SKVKVN 80

Query: 99  RLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEE 158
           ++  ++ +ILR    ++     VP     +E V +A    +     F+N VL  +SR ++
Sbjct: 81  KMKPVIRTILRMSAYQICHMDRVPDSAACNEAVKLAEKRGFSGLKGFVNGVLRSISRGKD 140


>gi|212550794|ref|YP_002309111.1| transcription termination factor NusB [Candidatus Azobacteroides
           pseudotrichonymphae genomovar. CFP2]
 gi|212549032|dbj|BAG83700.1| transcription termination factor NusB [Candidatus Azobacteroides
           pseudotrichonymphae genomovar. CFP2]
          Length = 305

 Score = 82.1 bits (202), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 18/96 (18%), Positives = 46/96 (47%), Gaps = 1/96 (1%)

Query: 67  EWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVI 126
           E+   ++   +   +    LI + + + W   R+ ++   I++  + EL    ++P++V 
Sbjct: 211 EYAIQLLRSSIIEAEENSDLIDTQM-KNWDKKRIALLDLIIMQMALAELNNFPAIPLKVT 269

Query: 127 ISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRS 162
           ++EY+ +A  +       FIN +L  +    +I ++
Sbjct: 270 LNEYIDLARYYSTPKSTSFINGILQAIVSILKINKN 305


>gi|290968496|ref|ZP_06560035.1| ribosomal RNA small subunit methyltransferase B [Megasphaera
           genomosp. type_1 str. 28L]
 gi|290781492|gb|EFD94081.1| ribosomal RNA small subunit methyltransferase B [Megasphaera
           genomosp. type_1 str. 28L]
          Length = 442

 Score = 82.1 bits (202), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 25/100 (25%), Positives = 44/100 (44%), Gaps = 2/100 (2%)

Query: 60  VYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECH 119
                D  ++  +++G +     +D  I   +  K S  ++D +  +ILR G+ +L    
Sbjct: 33  ALSDRDRRFYTELVYGTLRYMAMLDRAIG--MLSKRSLQQMDAVCAAILRLGLYQLQYLD 90

Query: 120 SVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEI 159
            VP      E V +A    +    KF+NAVL    R+ E+
Sbjct: 91  KVPPSAACYEAVALARKMGHEGMAKFVNAVLRNALRRPEV 130


>gi|251797738|ref|YP_003012469.1| sun protein [Paenibacillus sp. JDR-2]
 gi|247545364|gb|ACT02383.1| sun protein [Paenibacillus sp. JDR-2]
          Length = 491

 Score = 82.1 bits (202), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 25/153 (16%), Positives = 56/153 (36%), Gaps = 14/153 (9%)

Query: 4   QDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLH 63
           Q+ +K+ + +  R   R  A+  L             ++E   Y       +  E+    
Sbjct: 26  QEGRKEQRPARVRTP-RELALDTL-----------VKVAETGAYSNLQLNRVLQEAQLQR 73

Query: 64  VDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPV 123
            D      +++G + R+  +D  +     +     +L+  +  +LR    +L+    +P 
Sbjct: 74  ADAALVTELVYGTIQRQLTLDHWLGKFAAKG--LRKLEPWVHQLLRMSAYQLLYLDRIPA 131

Query: 124 EVIISEYVCIAHDFFYGDEPKFINAVLDKVSRK 156
              ++E V IA    +      +N +L  + R 
Sbjct: 132 HAAVNEAVTIAKRRGHQGISGMVNGILRSIDRN 164


>gi|257868127|ref|ZP_05647780.1| sun protein [Enterococcus casseliflavus EC30]
 gi|257874598|ref|ZP_05654251.1| sun protein [Enterococcus casseliflavus EC10]
 gi|257802241|gb|EEV31113.1| sun protein [Enterococcus casseliflavus EC30]
 gi|257808762|gb|EEV37584.1| sun protein [Enterococcus casseliflavus EC10]
          Length = 452

 Score = 82.1 bits (202), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 29/137 (21%), Positives = 54/137 (39%), Gaps = 14/137 (10%)

Query: 20  RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79
           R  A++AL +I+  G  +  ++ E        D            D      +++G + R
Sbjct: 13  RFVALEALLRIEKGGAYSNLLLRELMNQGRLNDK-----------DGRLLTELVYGTISR 61

Query: 80  KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139
           +  +D  +   +         D  + ++LR  + +++    VP   II E V IA     
Sbjct: 62  QLLLDYYLDRFIKNARKV---DPWVKTLLRLSLYQMLYLDKVPAHAIIHEAVDIAKAKGN 118

Query: 140 GDEPKFINAVLDKVSRK 156
               KF+N VL  + R+
Sbjct: 119 PGTGKFVNGVLRTIQRQ 135


>gi|257877736|ref|ZP_05657389.1| sun protein [Enterococcus casseliflavus EC20]
 gi|257811902|gb|EEV40722.1| sun protein [Enterococcus casseliflavus EC20]
          Length = 452

 Score = 82.1 bits (202), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 29/137 (21%), Positives = 54/137 (39%), Gaps = 14/137 (10%)

Query: 20  RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79
           R  A++AL +I+  G  +  ++ E        D            D      +++G + R
Sbjct: 13  RFVALEALLRIEKGGAYSNLLLRELMNQGRLNDK-----------DGRLLTELVYGTISR 61

Query: 80  KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139
           +  +D  +   +         D  + ++LR  + +++    VP   II E V IA     
Sbjct: 62  QLLLDYYLDRFIKNARKV---DPWVKTLLRLSLYQMLYLDKVPAHAIIHEAVDIAKAKGN 118

Query: 140 GDEPKFINAVLDKVSRK 156
               KF+N VL  + R+
Sbjct: 119 PGTGKFVNGVLRTIQRQ 135


>gi|227485064|ref|ZP_03915380.1| possible transcription antitermination protein NusB [Anaerococcus
           lactolyticus ATCC 51172]
 gi|227236897|gb|EEI86912.1| possible transcription antitermination protein NusB [Anaerococcus
           lactolyticus ATCC 51172]
          Length = 128

 Score = 82.1 bits (202), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 30/144 (20%), Positives = 57/144 (39%), Gaps = 18/144 (12%)

Query: 15  RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74
           +R   R    + ++Q               +T     DT+  + +  L+ D  +    I+
Sbjct: 2   KRTDQREWVFKLIFQ---------------DTINKIEDTKDLLSNHKLNEDETFIVESIN 46

Query: 75  GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134
                 + ID ++     +     +L  ++ SI+   + E+     +PV V I+E V IA
Sbjct: 47  SYKKNFEKIDKILQDNAPKGMP--KLSRVVKSIIYLSINEI-YFLDIPVSVSINEAVNIA 103

Query: 135 HDFFYGDEPKFINAVLDKVSRKEE 158
             F   D+ K +N +L  + R E 
Sbjct: 104 KKFSNEDDYKIVNLILGNIVRNEN 127


>gi|145224311|ref|YP_001134989.1| Fmu (Sun) domain-containing protein [Mycobacterium gilvum PYR-GCK]
 gi|315444643|ref|YP_004077522.1| tRNA/rRNA cytosine-C5-methylase [Mycobacterium sp. Spyr1]
 gi|145216797|gb|ABP46201.1| Fmu (Sun) domain protein [Mycobacterium gilvum PYR-GCK]
 gi|315262946|gb|ADT99687.1| tRNA/rRNA cytosine-C5-methylase [Mycobacterium sp. Spyr1]
          Length = 462

 Score = 82.1 bits (202), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 36/167 (21%), Positives = 61/167 (36%), Gaps = 17/167 (10%)

Query: 6   NKKDLKLSHRRGI---ARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYL 62
            + D K   RR     AR AA   L             +SE ++Y   A   L  +    
Sbjct: 2   TRPDKKRPPRRKRLDPARQAAFDVL-----------RAVSERDSYANLALPALLRDRRIT 50

Query: 63  HVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVP 122
             D  +   + +G    K  +D +I++          +D IL  +LR G  +++    V 
Sbjct: 51  GRDAAFATELTYGTCRAKGLLDAVIAAA--AGRPVDHIDPILLDLLRLGAYQIL-RTRVD 107

Query: 123 VEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRSGCVSAIT 169
               +S  V  A   F      F+N VL  ++R++E      ++   
Sbjct: 108 DHAAVSTTVEQAGLEFDTARAGFVNGVLRTIARRDEADWVAELAPPA 154


>gi|329574370|gb|EGG55942.1| transcription antitermination protein NusB domain protein
           [Enterococcus faecalis TX1467]
          Length = 59

 Score = 82.1 bits (202), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 15/58 (25%), Positives = 29/58 (50%)

Query: 103 ILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIK 160
           I   ILR  + E++    VP  V ++E V ++  +      KF+N VL  + ++ + +
Sbjct: 1   IDIVILRLAIFEMLYVSDVPNIVALNEAVELSKKYSDDRSRKFVNGVLSNLMKEIDSE 58


>gi|238926271|ref|ZP_04658031.1| rRNA SAM-dependent methyltransferase RmsB [Selenomonas flueggei
           ATCC 43531]
 gi|238885951|gb|EEQ49589.1| rRNA SAM-dependent methyltransferase RmsB [Selenomonas flueggei
           ATCC 43531]
          Length = 449

 Score = 82.1 bits (202), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 25/148 (16%), Positives = 49/148 (33%), Gaps = 16/148 (10%)

Query: 20  RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79
           R  A+Q L +I   G      ++E               +     D  +   +++G +  
Sbjct: 14  REQAMQVLLRIHSEGAYANVALAEELRI-----------AQMTERDRRFLTELVYGTVKA 62

Query: 80  KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139
            + +D +I   +       +    +  +LR G  ++     +P   +    V +A     
Sbjct: 63  GETLDYMIRRYVA---DLKKAQPPIRELLRLGFYQIFFMDKIPSSAVCHTAVELAKKHGG 119

Query: 140 GDEPKFINAVLDKVSRKEEIKRSGCVSA 167
                F+N VL    R  E KR+     
Sbjct: 120 KGAASFVNGVLRTALR--EPKRAALPQG 145


>gi|325479479|gb|EGC82575.1| transcription antitermination factor NusB [Anaerococcus prevotii
           ACS-065-V-Col13]
          Length = 127

 Score = 81.7 bits (201), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 33/143 (23%), Positives = 53/143 (37%), Gaps = 19/143 (13%)

Query: 15  RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74
            R   R    + +YQ  I      + I E                     D E+ +  I+
Sbjct: 2   NRAEQREWVFKLIYQDMISHTDDIDKIIEENGLS----------------DEEFVKESIN 45

Query: 75  GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134
                   I+  +   L       RL  +L +IL   + E+     VPV V I+E V +A
Sbjct: 46  SYFSNISSIEEKLKENLDS--RSKRLAKVLRAILYLSLNEI-YYLGVPVSVSINEAVNLA 102

Query: 135 HDFFYGDEPKFINAVLDKVSRKE 157
             +   D+ K IN++L  + RK+
Sbjct: 103 KKYSDKDDYKLINSILGSIVRKD 125


>gi|325567768|ref|ZP_08144379.1| RNA methyltransferase Sun [Enterococcus casseliflavus ATCC 12755]
 gi|325158541|gb|EGC70688.1| RNA methyltransferase Sun [Enterococcus casseliflavus ATCC 12755]
          Length = 452

 Score = 81.7 bits (201), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 29/137 (21%), Positives = 54/137 (39%), Gaps = 14/137 (10%)

Query: 20  RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79
           R  A++AL +I+  G  +  ++ E        D            D      +++G + R
Sbjct: 13  RFVALEALLRIEKGGAYSNLLLRELMNQGRLNDK-----------DGRLLTELVYGTISR 61

Query: 80  KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139
           +  +D  +   +         D  + ++LR  + +++    VP   II E V IA     
Sbjct: 62  QLLLDYYLDRFIKNARKV---DPWVKTLLRLSLYQMLYLDKVPAHAIIHEAVDIAKAKGN 118

Query: 140 GDEPKFINAVLDKVSRK 156
               KF+N VL  + R+
Sbjct: 119 PGTGKFVNGVLRTIQRQ 135


>gi|269218525|ref|ZP_06162379.1| B-like utilization substance protein [Actinomyces sp. oral taxon
           848 str. F0332]
 gi|269211636|gb|EEZ77976.1| B-like utilization substance protein [Actinomyces sp. oral taxon
           848 str. F0332]
          Length = 171

 Score = 81.7 bits (201), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 32/156 (20%), Positives = 65/156 (41%), Gaps = 12/156 (7%)

Query: 1   MTIQDNKKDLKLS-HRRGIARLAAVQALYQIDIIGC-STTEIISEYETYRFCADTELDVE 58
           M  Q  ++  K     R   R  A+  +++ D  G     ++++     R  + ++  + 
Sbjct: 1   MDEQSKRRRRKDGFTARTKQRNRALDVVFEADERGLLGQGDLLALLGERRVVSTSQSPI- 59

Query: 59  SVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIEC 118
                   ++   I+    +    ID  I    +E W+ SR++ +  SILRA   EL+  
Sbjct: 60  -------RDFGASIVEAYAENADDID-TIVEAASEDWAMSRMNAVDRSILRAAAAELVYV 111

Query: 119 HSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVS 154
            +    V I E+  +A ++       F+  VL++V+
Sbjct: 112 GTDRFHV-IPEWASLAREYSTERSVGFVMGVLNRVA 146


>gi|87123339|ref|ZP_01079190.1| Antitermination protein NusB [Synechococcus sp. RS9917]
 gi|86169059|gb|EAQ70315.1| Antitermination protein NusB [Synechococcus sp. RS9917]
          Length = 219

 Score = 81.7 bits (201), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 26/85 (30%), Positives = 41/85 (48%), Gaps = 2/85 (2%)

Query: 69  FRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIIS 128
            R  +  V++++  ID  +   + E W  SRL  I   ILR  V++L   H  P  V  +
Sbjct: 127 ARRRVALVLEQRSAIDARLDGVM-EGWRLSRLPRIDRDILRLAVVDLTALH-TPAAVACN 184

Query: 129 EYVCIAHDFFYGDEPKFINAVLDKV 153
           E V +AH +      + IN VL ++
Sbjct: 185 EAVELAHRYSDDQGRRMINGVLRRL 209


>gi|160947101|ref|ZP_02094268.1| hypothetical protein PEPMIC_01033 [Parvimonas micra ATCC 33270]
 gi|158446235|gb|EDP23230.1| hypothetical protein PEPMIC_01033 [Parvimonas micra ATCC 33270]
          Length = 434

 Score = 81.7 bits (201), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 26/121 (21%), Positives = 54/121 (44%), Gaps = 3/121 (2%)

Query: 39  EIISEYETYRFCADTELDVESVY-LHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSF 97
           EI+ E +     +   L+  +     +D ++ R I++G ++ + ++D +I      K   
Sbjct: 7   EILCEIKDENSNSTNLLNKSTKNISDLDSKFLREIVYGTLENRIYLDYIIKKLC--KLRI 64

Query: 98  SRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKE 157
            + +  + +ILR  + ++I    +P   II+E V +   F       F+N  L    R +
Sbjct: 65  KKFNPYILNILRISIYQIIFMDKIPEFAIINEAVNLTKVFKLKKFSSFVNGSLRNFLRNK 124

Query: 158 E 158
           E
Sbjct: 125 E 125


>gi|312622710|ref|YP_004024323.1| sun protein [Caldicellulosiruptor kronotskyensis 2002]
 gi|312203177|gb|ADQ46504.1| sun protein [Caldicellulosiruptor kronotskyensis 2002]
          Length = 431

 Score = 81.7 bits (201), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 34/144 (23%), Positives = 57/144 (39%), Gaps = 17/144 (11%)

Query: 20  RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79
           R AA   L++I+    S  + + E    +   +            D   F  ++HGV+  
Sbjct: 4   RQAAFFLLFEIEKKKFSGVDSLLEKFHQKLKNEK-----------DRALFVELVHGVLRY 52

Query: 80  KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139
           K  ID  I+    +     R+     +ILR    EL+    +P    ++E   IA     
Sbjct: 53  KNLIDYYINFVAKKGVKDKRI----LNILRVATYELLFLEKIPEYATVNEACEIASKI-N 107

Query: 140 GDEPKFINAVLDKVSR-KEEIKRS 162
                F+NA+L  + R K +I+ S
Sbjct: 108 PHLKAFVNAILRNIIRNKNQIEES 131


>gi|313664987|ref|YP_004046858.1| transcription antitermination factor NusB [Mycoplasma leachii PG50]
 gi|312949412|gb|ADR24008.1| transcription antitermination factor NusB [Mycoplasma leachii PG50]
          Length = 132

 Score = 81.7 bits (201), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 30/136 (22%), Positives = 59/136 (43%), Gaps = 14/136 (10%)

Query: 20  RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79
           R   +QA Y+  ++  S   I  +           LD    + +  L +   +I    ++
Sbjct: 11  RKLLIQAFYKYQLLNASIDYIYQDV----------LDDVQNFNNKKLLFEINLI---AEK 57

Query: 80  KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139
           +  +   I+  ++  W + R+  ++ +IL  G  E++     P  V I+E V    +   
Sbjct: 58  QVDLINHININISLNWKWDRIPAVIRAILIVGTYEILYT-DTPKPVTINEMVNYVKEIEP 116

Query: 140 GDEPKFINAVLDKVSR 155
             + KF+NAVLDK+ +
Sbjct: 117 DFDYKFVNAVLDKIIK 132


>gi|266624677|ref|ZP_06117612.1| ribosomal RNA small subunit methyltransferase B [Clostridium
           hathewayi DSM 13479]
 gi|288863456|gb|EFC95754.1| ribosomal RNA small subunit methyltransferase B [Clostridium
           hathewayi DSM 13479]
          Length = 442

 Score = 81.7 bits (201), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 22/102 (21%), Positives = 46/102 (45%), Gaps = 6/102 (5%)

Query: 59  SVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIEC 118
                 +  +   I+ G ++    +D +I+S  + K    ++  ++ ++LR  V +++  
Sbjct: 37  QYLDKQERAFISRIVEGTVEYTLQLDYVINSYSSVK--VKKMKPVIRTLLRMSVYQILYM 94

Query: 119 HSVPVEVIISEYVCIA--HDFFYGDEPKFINAVLDKVSRKEE 158
             VP   + +E V +A    F       F+N VL  +SR +E
Sbjct: 95  DRVPDSAVCNEAVKLAQKRKFTGLK--GFVNGVLRGISRNKE 134


>gi|227824651|ref|ZP_03989483.1| SUN protein [Acidaminococcus sp. D21]
 gi|226905150|gb|EEH91068.1| SUN protein [Acidaminococcus sp. D21]
          Length = 445

 Score = 81.7 bits (201), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 25/138 (18%), Positives = 54/138 (39%), Gaps = 13/138 (9%)

Query: 20  RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79
           R  A+  L           + I E   Y   A  +    +    +D +    +++G +  
Sbjct: 8   RELALLVL-----------DEIYERGAYANLALNKALRGNGLSSLDRKLCTELVYGTVKT 56

Query: 80  KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139
              +D  +   +     F ++   L +ILR G  +++    +P    ++E   +A  +  
Sbjct: 57  TGTLDWYLCRVINR--PFRKMAPRLRTILRMGAYQILYLERIPDSAAVNECANLARYYVN 114

Query: 140 GDEPKFINAVLDKVSRKE 157
            +  K +N VL ++SR +
Sbjct: 115 ENSVKLVNGVLRQLSRTK 132


>gi|154685990|ref|YP_001421151.1| RsmB [Bacillus amyloliquefaciens FZB42]
 gi|154351841|gb|ABS73920.1| RsmB [Bacillus amyloliquefaciens FZB42]
          Length = 447

 Score = 81.3 bits (200), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 24/142 (16%), Positives = 49/142 (34%), Gaps = 24/142 (16%)

Query: 20  RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79
           R  A++AL           E + + + Y     T +   +     D      +++G +  
Sbjct: 7   RELALEAL-----------EKLEQNQAYSNLLLTSVIKTNTLSDQDRGLLTELVYGTLQN 55

Query: 80  KQHIDLLISSCL-----TEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134
           K  +D ++   +      + W           +LR    ++     +P    I E V IA
Sbjct: 56  KIALDYMLKPFIRKPNKVKSWVIQ--------LLRLSAYQMEYLEKIPDRAAIHEAVEIA 107

Query: 135 HDFFYGDEPKFINAVLDKVSRK 156
               +     F+N +L  + R+
Sbjct: 108 KKRGHKGIASFVNGILRSLQRE 129


>gi|240147074|ref|ZP_04745675.1| ribosomal RNA small subunit methyltransferase B [Roseburia
           intestinalis L1-82]
 gi|257200759|gb|EEU99043.1| ribosomal RNA small subunit methyltransferase B [Roseburia
           intestinalis L1-82]
          Length = 446

 Score = 81.3 bits (200), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 25/137 (18%), Positives = 51/137 (37%), Gaps = 12/137 (8%)

Query: 20  RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79
           R  A+  L ++   G  + +++             L+        +  +   ++ G +  
Sbjct: 8   RRLALDVLLEVTEHGAYSNQVLR----------AVLEKYQYMEKYERAFLTRLVEGTIQH 57

Query: 80  KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139
              +D +I      K        ++ +ILR GV ++    SVP     +E V +A    +
Sbjct: 58  MIELDYVIDQFSKVKVKKM--KPVIRNILRMGVYQIQYMDSVPDSAACNEAVKLARKSGF 115

Query: 140 GDEPKFINAVLDKVSRK 156
                F+N VL  ++R 
Sbjct: 116 STLSGFVNGVLRNIARN 132


>gi|309775471|ref|ZP_07670473.1| N utilization substance protein B [Erysipelotrichaceae bacterium
           3_1_53]
 gi|308916767|gb|EFP62505.1| N utilization substance protein B [Erysipelotrichaceae bacterium
           3_1_53]
          Length = 81

 Score = 81.3 bits (200), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 25/81 (30%), Positives = 41/81 (50%), Gaps = 2/81 (2%)

Query: 73  IHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVC 132
           I  V  R  +ID  I+  L + W+F RL  +  +IL     EL +  + P  ++I E V 
Sbjct: 3   IDAVAYRDVYIDK-INEALRQDWTFDRLGFVEQAILLMAACEL-DLETAPKAIVIDEAVT 60

Query: 133 IAHDFFYGDEPKFINAVLDKV 153
           +A  +   +  + IN VLD++
Sbjct: 61  LAKKYCDDETYRLINGVLDRL 81


>gi|261419371|ref|YP_003253053.1| sun protein [Geobacillus sp. Y412MC61]
 gi|319766186|ref|YP_004131687.1| sun protein [Geobacillus sp. Y412MC52]
 gi|261375828|gb|ACX78571.1| sun protein [Geobacillus sp. Y412MC61]
 gi|317111052|gb|ADU93544.1| sun protein [Geobacillus sp. Y412MC52]
          Length = 444

 Score = 81.3 bits (200), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 27/137 (19%), Positives = 50/137 (36%), Gaps = 14/137 (10%)

Query: 20  RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79
           R  A+  L  I+  G            Y      E   +      D      I++G + R
Sbjct: 4   RELALDTLLAIEQKG-----------AYSHLQLNEAIQKGRLDGRDAALLTEIVYGTVQR 52

Query: 80  KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139
           +  +D  ++  L +     RL+  +  +LR  + +++    VP    + E V IA    +
Sbjct: 53  RDTLDYYLAPFLRKA---RRLEPWVRVLLRLTLYQMVYLDRVPDRAAVFEAVEIAKRRGH 109

Query: 140 GDEPKFINAVLDKVSRK 156
                 +N VL  + R+
Sbjct: 110 RGIASLVNGVLRAIGRE 126


>gi|257871148|ref|ZP_05650801.1| sun protein [Enterococcus gallinarum EG2]
 gi|257805312|gb|EEV34134.1| sun protein [Enterococcus gallinarum EG2]
          Length = 458

 Score = 81.3 bits (200), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 29/137 (21%), Positives = 59/137 (43%), Gaps = 14/137 (10%)

Query: 20  RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79
           R  A++AL +I+  G  +  ++ E        D            D      +++G + R
Sbjct: 19  RFVALEALVRIERGGAYSNLLLRELMNQGRLNDK-----------DGRLLTEMVYGTISR 67

Query: 80  KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139
           +  +D  +++ +       ++D  + S+LR  + +++    VP   I++E V IA     
Sbjct: 68  QLLLDYYLANFIKNA---KKVDPWVRSLLRLSLYQMLYLDKVPNHAILNEAVEIAKAKGN 124

Query: 140 GDEPKFINAVLDKVSRK 156
               KF+N VL  + R+
Sbjct: 125 PGIGKFVNGVLRTIQRE 141


>gi|325290449|ref|YP_004266630.1| sun protein [Syntrophobotulus glycolicus DSM 8271]
 gi|324965850|gb|ADY56629.1| sun protein [Syntrophobotulus glycolicus DSM 8271]
          Length = 461

 Score = 81.3 bits (200), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 30/141 (21%), Positives = 55/141 (39%), Gaps = 21/141 (14%)

Query: 17  GIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGV 76
             AR  AV+ L              +E E        +  +  +    D +    +++G 
Sbjct: 14  HNARRTAVRIL------------TRAEKEKAYVNLLLQRQLRELGDSRDRQLAAALVNGT 61

Query: 77  MDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHD 136
           +  +  +D  I   L      S L  ++ +ILR G  +L+    +P    ++E V     
Sbjct: 62  LKNRLTLDYAIRRHLKT--PMSALPHMVRAILRTGAFQLLYMDRIPAAAAVNEAVKSVKA 119

Query: 137 FFYGDEPKF---INAVLDKVS 154
               +EPKF   +N+VL +V+
Sbjct: 120 ----EEPKFAGLVNSVLHRVA 136


>gi|291536615|emb|CBL09727.1| ribosomal RNA small subunit methyltransferase RsmB [Roseburia
           intestinalis M50/1]
 gi|291541043|emb|CBL14154.1| ribosomal RNA small subunit methyltransferase RsmB [Roseburia
           intestinalis XB6B4]
          Length = 446

 Score = 81.3 bits (200), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 25/137 (18%), Positives = 51/137 (37%), Gaps = 12/137 (8%)

Query: 20  RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79
           R  A+  L ++   G  + +++             L+        +  +   ++ G +  
Sbjct: 8   RRLALDVLLEVTEHGAYSNQVLR----------AVLEKYQYMEKYERAFLTRLVEGTIQH 57

Query: 80  KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139
              +D +I      K        ++ +ILR GV ++    SVP     +E V +A    +
Sbjct: 58  MIELDYVIDQFSKVKVKKM--KPVIRNILRMGVYQIQYMDSVPDSAACNEAVKLARKSGF 115

Query: 140 GDEPKFINAVLDKVSRK 156
                F+N VL  ++R 
Sbjct: 116 STLSGFVNGVLRNIARN 132


>gi|308173537|ref|YP_003920242.1| RNA-binding protein [Bacillus amyloliquefaciens DSM 7]
 gi|307606401|emb|CBI42772.1| RNA-binding Sun protein; 16S rRNA m5C967 methyltransferase,
           S-adenosyl-L-methionine-dependent [Bacillus
           amyloliquefaciens DSM 7]
 gi|328553530|gb|AEB24022.1| 16S rRNA methyltransferase B [Bacillus amyloliquefaciens TA208]
 gi|328911678|gb|AEB63274.1| RNA-binding Sun protein; 16S rRNA m5C967 methyltransferase,
           S-adenosyl-L-methionine-dependent [Bacillus
           amyloliquefaciens LL3]
          Length = 447

 Score = 80.9 bits (199), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 23/137 (16%), Positives = 49/137 (35%), Gaps = 14/137 (10%)

Query: 20  RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79
           R  A++AL           E + + + Y     T +   +     D      +++G +  
Sbjct: 7   RELALEAL-----------EKLEQNQAYSNLLLTSVIKTNTLSDQDRGLLTELVYGTLQN 55

Query: 80  KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139
           K  +D ++   + +          +  +LR    ++     +P    I E V IA    +
Sbjct: 56  KIALDYMLKPFIRKPNKVK---PWVIQLLRLSAYQMEYLEKIPDRAAIHEAVEIAKKRGH 112

Query: 140 GDEPKFINAVLDKVSRK 156
                F+N +L  + R+
Sbjct: 113 KGIASFVNGILRSLQRE 129


>gi|210622413|ref|ZP_03293145.1| hypothetical protein CLOHIR_01093 [Clostridium hiranonis DSM 13275]
 gi|210154229|gb|EEA85235.1| hypothetical protein CLOHIR_01093 [Clostridium hiranonis DSM 13275]
          Length = 441

 Score = 80.9 bits (199), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 28/140 (20%), Positives = 60/140 (42%), Gaps = 14/140 (10%)

Query: 19  ARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMD 78
           AR AA + L  I+I    +   I++       +D            D      +++GV++
Sbjct: 3   AREAAFKILCDIEIEKNYSNMAINKIFKNEKISDK-----------DKGLATELVYGVIE 51

Query: 79  RKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFF 138
            ++++D +I+     K    ++   +  ILR G  +++    +     ++E V +A  + 
Sbjct: 52  NRKYLDFIINKL--SKIKVKKMSSFVKIILRMGTYQILFLDKIEDHAAVNETVKLASKY- 108

Query: 139 YGDEPKFINAVLDKVSRKEE 158
            G    F+NA+L    R++ 
Sbjct: 109 DGKSKGFVNAILRNEIRQKR 128


>gi|297530652|ref|YP_003671927.1| sun protein [Geobacillus sp. C56-T3]
 gi|297253904|gb|ADI27350.1| sun protein [Geobacillus sp. C56-T3]
          Length = 444

 Score = 80.9 bits (199), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 27/137 (19%), Positives = 50/137 (36%), Gaps = 14/137 (10%)

Query: 20  RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79
           R  A+  L  I+  G            Y      E   +      D      I++G + R
Sbjct: 4   RELALDTLLAIEQKG-----------AYSHLQLNEAIQKGRLDGRDAALLTEIVYGTVQR 52

Query: 80  KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139
           +  +D  ++  L +     RL+  +  +LR  + +++    VP    + E V IA    +
Sbjct: 53  RDTLDYYLAPFLRKA---RRLEPWVRVLLRLTLYQMVYLDRVPDRAAVFEAVEIAKRRGH 109

Query: 140 GDEPKFINAVLDKVSRK 156
                 +N VL  + R+
Sbjct: 110 RGIASLVNGVLRAIGRE 126


>gi|225028095|ref|ZP_03717287.1| hypothetical protein EUBHAL_02365 [Eubacterium hallii DSM 3353]
 gi|224954565|gb|EEG35774.1| hypothetical protein EUBHAL_02365 [Eubacterium hallii DSM 3353]
          Length = 466

 Score = 80.9 bits (199), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 32/157 (20%), Positives = 62/157 (39%), Gaps = 14/157 (8%)

Query: 2   TIQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVY 61
           T Q  +K++++  +R   R  A+  L           +I    +         L      
Sbjct: 6   TKQTRRKEMQM-EKRTDMRAEALDTL----------IDIERNKKLSHIAIGETLMRNQFE 54

Query: 62  LHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSV 121
              D  ++  +  GV +RK ++D ++      K    +   ++ S+LR G  +++    V
Sbjct: 55  KKADRAFYTRLCEGVTERKIYLDYILDHY--SKTPMKKCKPLIRSLLRMGAYQILFM-DV 111

Query: 122 PVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEE 158
                 SE V +A    +G    F+N VL  + R++E
Sbjct: 112 RDAAACSEAVSLAKKRGFGRLSGFVNGVLRTLVREKE 148


>gi|315640285|ref|ZP_07895402.1| RNA methyltransferase Sun [Enterococcus italicus DSM 15952]
 gi|315483947|gb|EFU74426.1| RNA methyltransferase Sun [Enterococcus italicus DSM 15952]
          Length = 449

 Score = 80.9 bits (199), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 25/120 (20%), Positives = 46/120 (38%), Gaps = 3/120 (2%)

Query: 36  STTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKW 95
           +  E + +   Y   A  E    +     D      +++G +  +  +D  ++  L +  
Sbjct: 15  TLLERVDKGGAYSNLAIKEAIATTQLNEKDARLLTELVYGTIGNQLRLDYYLAPFLKKAK 74

Query: 96  SFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSR 155
              R   +   +LR  V +L     VP   I +E V IA         +F+N VL ++ R
Sbjct: 75  KVDRWVKV---LLRMSVYQLHFLDKVPSHAIFNEAVEIAKYRGNVGVGQFVNGVLRQLQR 131


>gi|239626556|ref|ZP_04669587.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA]
 gi|239516702|gb|EEQ56568.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA]
          Length = 447

 Score = 80.9 bits (199), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 23/123 (18%), Positives = 50/123 (40%), Gaps = 6/123 (4%)

Query: 37  TTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWS 96
            +E++ +        +  L         D  +   +  G ++    ID +I+     K  
Sbjct: 20  LSEVLDKGSFVHLVLNQALQKYQYLDKSDRAFITRVTEGTLEYLLQIDHIINKYSRTK-- 77

Query: 97  FSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA--HDFFYGDEPKFINAVLDKVS 154
             ++  ++ ++LR  V +++    VP   + +E V +A    F       F+N VL  +S
Sbjct: 78  TDKMKPLIRNLLRMSVYQILYMDRVPDSAVCNEAVKLAVKRRFTGLK--GFVNGVLRTIS 135

Query: 155 RKE 157
           R++
Sbjct: 136 REK 138


>gi|291515762|emb|CBK64972.1| Transcription termination factor [Alistipes shahii WAL 8301]
          Length = 311

 Score = 80.9 bits (199), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 27/129 (20%), Positives = 47/129 (36%), Gaps = 5/129 (3%)

Query: 40  IISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSR 99
           ++      R                D E+ + +    +         I    T  W   R
Sbjct: 181 VLRTLSNLRVSHTELKVPAKFKSSEDPEFVKTLFEKSLVNYSAFQDYIEKF-TANWDVER 239

Query: 100 LDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSR---- 155
           +  +   I+   + EL    SVPV+V + E++ I+  +       FIN VLDK+      
Sbjct: 240 IVFMDNLIIGTAMAELTSFPSVPVKVTLDEWIEISKYYSTPGSSTFINGVLDKIVESLTA 299

Query: 156 KEEIKRSGC 164
           +  IK++G 
Sbjct: 300 EGRIKKAGR 308


>gi|288553113|ref|YP_003425048.1| rRNA SAM-dependent methyltransferase RmsB [Bacillus pseudofirmus
           OF4]
 gi|288544273|gb|ADC48156.1| rRNA SAM-dependent methyltransferase RmsB [Bacillus pseudofirmus
           OF4]
          Length = 448

 Score = 80.9 bits (199), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 25/137 (18%), Positives = 56/137 (40%), Gaps = 13/137 (9%)

Query: 20  RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79
           R  AV  L QI+     +  ++++              +S     D+     +++G + R
Sbjct: 6   REVAVDVLLQIEKNQAYSNLLLNQTIN-----------KSKLDRRDIGLLTELVYGTIQR 54

Query: 80  KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139
           +  +D  ++  + +     +L+  +  +LR  V +L+    +P   ++ E V IA    +
Sbjct: 55  RDTLDYFLAPFVKKG--IDKLEDWVKVLLRLSVYQLVYLDRIPDRAVVHEAVTIAKKRGH 112

Query: 140 GDEPKFINAVLDKVSRK 156
                 +N VL  + R+
Sbjct: 113 KGISGMVNGVLRSIGRE 129


>gi|187778898|ref|ZP_02995371.1| hypothetical protein CLOSPO_02493 [Clostridium sporogenes ATCC
           15579]
 gi|187772523|gb|EDU36325.1| hypothetical protein CLOSPO_02493 [Clostridium sporogenes ATCC
           15579]
          Length = 442

 Score = 80.9 bits (199), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 27/143 (18%), Positives = 55/143 (38%), Gaps = 14/143 (9%)

Query: 19  ARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMD 78
           AR  A+  L  +   G  +  ++++        D            D      I++G + 
Sbjct: 4   AREVALDVLKAVLYEGAYSNIVLNKKLNKSNLKDN-----------DKALITEIVYGTLK 52

Query: 79  RKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFF 138
            K+ +D++I S L        +D  + +ILR  + ++     +P    ++E V ++    
Sbjct: 53  YKETLDIIIQSYLKN--PIKTMDKNIANILRITIYQIRYLDKIPSFAAVNEAVEMSKKIS 110

Query: 139 YGDEPKFINAVLDKVSRKEEIKR 161
                K +N VL    R  + K+
Sbjct: 111 IKYS-KLVNGVLRNYIRTYKNKK 132


>gi|331703119|ref|YP_004399806.1| transcription termination factor NusB [Mycoplasma mycoides subsp.
           capri LC str. 95010]
 gi|328801674|emb|CBW53827.1| Transcription termination factor NusB [Mycoplasma mycoides subsp.
           capri LC str. 95010]
          Length = 132

 Score = 80.9 bits (199), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 28/136 (20%), Positives = 58/136 (42%), Gaps = 14/136 (10%)

Query: 20  RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79
           R   +Q  Y+  ++  +   I  +           LD      + D+ +    I  +  +
Sbjct: 11  RKLLIQTFYKYQLLNSNIDYIHQDI----------LDDVQNINNKDVLFE---IEQIAKK 57

Query: 80  KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139
           +  +   I++ ++  W + R+  ++ +IL  G  E++     P  V I+E V    +   
Sbjct: 58  QTDLINHINTNVSSSWKWDRIPAVIRAILIVGTYEILYT-DTPKPVTINEMVKYVKEIEP 116

Query: 140 GDEPKFINAVLDKVSR 155
             + KF+NAVLDK+ +
Sbjct: 117 DFDYKFVNAVLDKLVK 132


>gi|56419708|ref|YP_147026.1| RNA-binding Sun protein [Geobacillus kaustophilus HTA426]
 gi|56379550|dbj|BAD75458.1| RNA-binding Sun protein [Geobacillus kaustophilus HTA426]
          Length = 444

 Score = 80.9 bits (199), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 27/137 (19%), Positives = 50/137 (36%), Gaps = 14/137 (10%)

Query: 20  RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79
           R  A+  L  I+  G            Y      E   +      D      I++G + R
Sbjct: 4   RELALDTLLAIEQKG-----------AYSHLQLNEAIQKGRLDGRDAALLTEIVYGTVQR 52

Query: 80  KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139
           +  +D  ++  L +     RL+  +  +LR  + +++    VP    + E V IA    +
Sbjct: 53  RDTLDYYLAPFLRKA---RRLEPWVRVLLRLTLYQMVYLDRVPDRAAVFEAVEIAKRRGH 109

Query: 140 GDEPKFINAVLDKVSRK 156
                 +N VL  + R+
Sbjct: 110 RGIASLVNGVLRAIGRE 126


>gi|153855357|ref|ZP_01996506.1| hypothetical protein DORLON_02520 [Dorea longicatena DSM 13814]
 gi|149752177|gb|EDM62108.1| hypothetical protein DORLON_02520 [Dorea longicatena DSM 13814]
          Length = 436

 Score = 80.9 bits (199), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 32/139 (23%), Positives = 59/139 (42%), Gaps = 12/139 (8%)

Query: 20  RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79
           R   +  L QI   G  +  +I             LD        +  +   +++G ++R
Sbjct: 8   RELVLDMLLQITRDGEYSHIVIK----------NVLDKYQYLDKRERAFITRVVNGTLER 57

Query: 80  KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139
              ID +I   L  K   +++  ++ +ILR+ V ++    SVP   I +E V +A    +
Sbjct: 58  MIEIDYII--NLFSKVKVNKMKQLIRTILRSSVYQMKYMDSVPDSAICNEAVKLAGKRGF 115

Query: 140 GDEPKFINAVLDKVSRKEE 158
            +   F+N VL  +SR  +
Sbjct: 116 VNLKGFVNGVLRNISRNLD 134


>gi|33860569|ref|NP_892130.1| transcription antitermination protein NusB [Prochlorococcus marinus
           subsp. pastoris str. CCMP1986]
 gi|33633511|emb|CAE18468.1| Antitermination protein NusB [Prochlorococcus marinus subsp.
           pastoris str. CCMP1986]
          Length = 209

 Score = 80.9 bits (199), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 22/80 (27%), Positives = 33/80 (41%), Gaps = 2/80 (2%)

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
           +++  + ID  I   +   W   RL  +   ILR      I     PV V   E V +A+
Sbjct: 128 IINNLKSIDSEIDEVMDR-WRLKRLPRVDRDILRLA-YVDIHFLDTPVAVACDEAVNLAN 185

Query: 136 DFFYGDEPKFINAVLDKVSR 155
            +      K IN VL ++ R
Sbjct: 186 KYCDTQGRKMINGVLRRLQR 205


>gi|320528399|ref|ZP_08029561.1| putative transcription antitermination factor NusB [Solobacterium
           moorei F0204]
 gi|320131313|gb|EFW23881.1| putative transcription antitermination factor NusB [Solobacterium
           moorei F0204]
          Length = 150

 Score = 80.9 bits (199), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 34/139 (24%), Positives = 58/139 (41%), Gaps = 14/139 (10%)

Query: 15  RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74
            R   R  A+  +YQ  I+      +I++        ++E+D           +F  +I 
Sbjct: 26  NRHDQRENAMITVYQYLIVQRDIHALIND---VFKVDESEID----------PYFIDVIK 72

Query: 75  GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134
             +  +      I S L + WS+ RL +I  +IL  G  E  +       VII + V +A
Sbjct: 73  TSIANEDRYREYIDSVLKKGWSYERLGLIEKAILLNGCAEF-DLKKTESAVIIDQSVQLA 131

Query: 135 HDFFYGDEPKFINAVLDKV 153
             +   D  K +N+VLD +
Sbjct: 132 KRYCDSDTYKLVNSVLDVI 150


>gi|15615070|ref|NP_243373.1| hypothetical protein BH2507 [Bacillus halodurans C-125]
 gi|10175127|dbj|BAB06226.1| BH2507 [Bacillus halodurans C-125]
          Length = 450

 Score = 80.9 bits (199), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 28/137 (20%), Positives = 59/137 (43%), Gaps = 13/137 (9%)

Query: 20  RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79
           R  A++ L QI+     +  ++++              ++     D+     +++G + R
Sbjct: 7   REVALETLVQIEKSQAYSNLLLNQKIK-----------QANLEPRDIGLLTELVYGTVQR 55

Query: 80  KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139
           ++ +D  I+S + +     +L+  +  +LR  V +L+    VP   II E V IA    +
Sbjct: 56  QKTLDYYIASFVAKGKR--KLEDWVRILLRLSVYQLVYLDKVPPHAIIHEAVNIAKKRGH 113

Query: 140 GDEPKFINAVLDKVSRK 156
                 +N VL  + R+
Sbjct: 114 KGISGLVNGVLRSMQRQ 130


>gi|123965243|ref|YP_001010324.1| transcription antitermination protein NusB [Prochlorococcus marinus
           str. MIT 9515]
 gi|123199609|gb|ABM71217.1| Antitermination protein NusB [Prochlorococcus marinus str. MIT
           9515]
          Length = 208

 Score = 80.5 bits (198), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 24/83 (28%), Positives = 34/83 (40%), Gaps = 2/83 (2%)

Query: 73  IHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVC 132
           I  ++D  Q ID  I   +   W   RL  I   ILR      I     P+ V   E V 
Sbjct: 124 IKSIIDNLQTIDSEIDEVMD-GWRLKRLPRIDRDILRLA-YIDIHLLDTPIAVACDEAVN 181

Query: 133 IAHDFFYGDEPKFINAVLDKVSR 155
           +A+ +      K IN VL ++ +
Sbjct: 182 LANKYSDTQGRKMINGVLRRLQK 204


>gi|148262276|ref|YP_001228982.1| sun protein [Geobacter uraniireducens Rf4]
 gi|146395776|gb|ABQ24409.1| sun protein [Geobacter uraniireducens Rf4]
          Length = 448

 Score = 80.5 bits (198), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 31/123 (25%), Positives = 55/123 (44%), Gaps = 6/123 (4%)

Query: 39  EIISEYETYRFCADTELDVE---SVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKW 95
           EI+   +  R  AD  +D E         D      +++GV+ R+  +D +I+    +K 
Sbjct: 12  EILLRIDKERSYADILIDRELSSGFLQGPDRGLLTELVYGVLRRQGTLDYIINRFSKQK- 70

Query: 96  SFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSR 155
              RL+  +  +LR G+ ++     VPV   ++E V +A          F+NAVL    R
Sbjct: 71  -SERLERSVLVLLRIGLYQIFYLDRVPVSAAVNETVKLAKVL-APRASGFVNAVLRSADR 128

Query: 156 KEE 158
           + +
Sbjct: 129 ERD 131


>gi|50365148|ref|YP_053573.1| transcription termination factor [Mesoplasma florum L1]
 gi|50363704|gb|AAT75689.1| transcription termination factor [Mesoplasma florum L1]
          Length = 134

 Score = 80.5 bits (198), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 35/150 (23%), Positives = 62/150 (41%), Gaps = 18/150 (12%)

Query: 6   NKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVD 65
           +++ L ++ RR       VQ  Y+  ++      I  +          +LDVE+      
Sbjct: 2   SEQKLSMTKRRT----YLVQMFYRYLLMNNDVNYIKQDILDE---TQEKLDVETTL---- 50

Query: 66  LEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEV 125
                 I + + ++   +   I   L+  W + R+   + SIL  G  E+I     P  V
Sbjct: 51  ------IANNIAEKLSDLKKEIIKHLSANWKWERIPTYIQSILIIGAYEIIFTP-TPKAV 103

Query: 126 IISEYVCIAHDFFYGDEPKFINAVLDKVSR 155
            I+E V +  +     + KF+NA LDKV +
Sbjct: 104 TINELVNLVKENEVDFDYKFVNACLDKVIK 133


>gi|118581643|ref|YP_902893.1| sun protein [Pelobacter propionicus DSM 2379]
 gi|118504353|gb|ABL00836.1| sun protein [Pelobacter propionicus DSM 2379]
          Length = 452

 Score = 80.5 bits (198), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 35/144 (24%), Positives = 62/144 (43%), Gaps = 14/144 (9%)

Query: 15  RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74
           +R   R +A   L +I   GC   +++          D EL+        D   F  ++ 
Sbjct: 7   KRSNPRQSACSVLLRIQREGCYADQLM----------DRELE-SGGLTGPDRGLFAELVF 55

Query: 75  GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134
           G + R+  +D ++SS LT+    SRL+     +LR G+ +L+    +P    ++E V +A
Sbjct: 56  GALRRQGTLDHILSSLLTQ--PLSRLEPQALILLRVGLYQLVYLDRIPESAAVNESVNLA 113

Query: 135 HDFFYGDEPKFINAVLDKVSRKEE 158
                      +NAVL    R+ +
Sbjct: 114 KK-TLPRASGLVNAVLRNYLRRGD 136


>gi|193212287|ref|YP_001998240.1| sun protein [Chlorobaculum parvum NCIB 8327]
 gi|193085764|gb|ACF11040.1| sun protein [Chlorobaculum parvum NCIB 8327]
          Length = 428

 Score = 80.5 bits (198), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 31/138 (22%), Positives = 55/138 (39%), Gaps = 14/138 (10%)

Query: 18  IARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVM 77
            AR  A++ L  ID+ G   +E +      R   +            D    R ++ G +
Sbjct: 2   TAREIALRVL--IDLDGMKKSEELLNRMLERSSLERN----------DRALARELVAGTL 49

Query: 78  DRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDF 137
             +   D +I         +++   +L  ILR GV +L+    VP    ++E V +A  F
Sbjct: 50  KYRLQCDFVIERFYRH--DYAKAAEVLKHILRLGVYQLLHLDRVPRSAAVNESVKLARKF 107

Query: 138 FYGDEPKFINAVLDKVSR 155
                 K +N +L  +S+
Sbjct: 108 KGEHLAKLVNGLLRNLSK 125


>gi|21673438|ref|NP_661503.1| Sun protein [Chlorobium tepidum TLS]
 gi|21646540|gb|AAM71845.1| sun protein [Chlorobium tepidum TLS]
          Length = 428

 Score = 80.5 bits (198), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 26/138 (18%), Positives = 57/138 (41%), Gaps = 14/138 (10%)

Query: 18  IARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVM 77
            AR  A++ L ++D     + E+++    +           +     D    + ++ G +
Sbjct: 2   TARELALRVLLELD-GMRKSEELLNRMHEH-----------AGLGKNDRALAKELVAGTL 49

Query: 78  DRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDF 137
             +   D +I+        +++   +L  ILR GV +L+    VP    ++E V +A  F
Sbjct: 50  KYRLQCDFIIARFYRH--DYAKAATVLKHILRLGVYQLLRLDRVPKSAAVNESVKLARKF 107

Query: 138 FYGDEPKFINAVLDKVSR 155
                 + +N +L  +S+
Sbjct: 108 KGDHLARLVNGLLRNISK 125


>gi|260588062|ref|ZP_05853975.1| ribosomal RNA small subunit methyltransferase B [Blautia hansenii
           DSM 20583]
 gi|260541589|gb|EEX22158.1| ribosomal RNA small subunit methyltransferase B [Blautia hansenii
           DSM 20583]
          Length = 454

 Score = 80.5 bits (198), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 24/118 (20%), Positives = 51/118 (43%), Gaps = 2/118 (1%)

Query: 39  EIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFS 98
           EI  E +       + L+        +  +   +  G ++ K  +D ++    +      
Sbjct: 17  EINKEGQHSHLVIRSTLEKYQYLEKQERAFLTRVCEGTLEYKLRLDYILDQYSSV--PVE 74

Query: 99  RLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRK 156
           ++  ++  ILR+ V +L+   +VP   +  E V +A    + +   F+N VL KV+R+
Sbjct: 75  KMKPVIREILRSSVYQLLYMDNVPDSAVCDEAVKLARKKGFYNLTGFVNGVLRKVARE 132


>gi|301320813|gb|ADK69456.1| transcription antitermination factor NusB [Mycoplasma mycoides
           subsp. mycoides SC str. Gladysdale]
          Length = 132

 Score = 80.5 bits (198), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 30/136 (22%), Positives = 62/136 (45%), Gaps = 14/136 (10%)

Query: 20  RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79
           R   +QA Y+ +++  S   I  +           LD      + D+ +    I+ + ++
Sbjct: 11  RKLLIQAFYKYELLNASIDYIHQDI----------LDDVQNIKNKDVLFE---INQISEK 57

Query: 80  KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139
           +  +   I+  ++  W + R+  ++ +IL  G  E++   + P  V I+E V    +   
Sbjct: 58  QTDLINHININISSSWKWDRMPAVIRAILIVGTYEILYT-NTPKSVTINEMVKYVKEIEP 116

Query: 140 GDEPKFINAVLDKVSR 155
             + KF+NAVLDK+ +
Sbjct: 117 DFDYKFVNAVLDKLVK 132


>gi|28210910|ref|NP_781854.1| 16S rRNA M(5)C 967 methyltransferase [Clostridium tetani E88]
 gi|28203349|gb|AAO35791.1| 16S rRNA M(5)C 967 methyltransferase [Clostridium tetani E88]
          Length = 454

 Score = 80.5 bits (198), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 29/155 (18%), Positives = 58/155 (37%), Gaps = 18/155 (11%)

Query: 6   NKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVD 65
           N+++L +   R +A                   + +     Y   A      +      D
Sbjct: 7   NRRNLYMVTDRKVA---------------IEVLDAVFLKNAYSNIALNNALNKYKLNEKD 51

Query: 66  LEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEV 125
             +   +++G +  +  ID +++S + +      +D  + +ILR G+ +L     VP   
Sbjct: 52  KAFITELVYGTIKYRHTIDTILNSYIKKG--IKSVDKYVLNILRIGIYQLRYLDKVPSFA 109

Query: 126 IISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIK 160
            ++E V +      G   K IN VL    R ++ K
Sbjct: 110 AVNECVELGKVKSKGTG-KLINGVLRNYIRNKDPK 143


>gi|172035456|ref|YP_001801957.1| Fmu, rRNA SAM-dependent methyltransferase [Cyanothece sp. ATCC
           51142]
 gi|171696910|gb|ACB49891.1| Fmu, rRNA SAM-dependent methyltransferase [Cyanothece sp. ATCC
           51142]
          Length = 452

 Score = 80.5 bits (198), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 28/149 (18%), Positives = 57/149 (38%), Gaps = 13/149 (8%)

Query: 10  LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF 69
           ++ + ++  AR   +  L QID     T   +      R    T L+        D    
Sbjct: 1   MQPTTKKTNARQLTLDILRQIDRKNSYTDIALD-----RAFNQTHLNPS------DRSLC 49

Query: 70  RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISE 129
             +++G++  ++ +D LI     +K         L  IL  G+ +L    ++P    ++ 
Sbjct: 50  TELVYGIIRHQRTLDTLIDQLGKKKAKQQ--PPDLRRILHIGLYQLRYLDNIPPSAAVNT 107

Query: 130 YVCIAHDFFYGDEPKFINAVLDKVSRKEE 158
            V +A ++        +N +L +  R  E
Sbjct: 108 SVNLAKEYKLNRLSGVVNGILRQYLRSSE 136


>gi|118444654|ref|YP_878315.1| sun protein [Clostridium novyi NT]
 gi|118135110|gb|ABK62154.1| sun protein [Clostridium novyi NT]
          Length = 443

 Score = 80.1 bits (197), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 26/125 (20%), Positives = 48/125 (38%), Gaps = 2/125 (1%)

Query: 36  STTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKW 95
              E++     Y      +   ++     D      I++G +  K  ID ++++ L +  
Sbjct: 10  DILEVVFNKNAYSNIVLRQTLNKNKIDDKDKGLITEIVYGTIKYKYTIDTILNNFLKKG- 68

Query: 96  SFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSR 155
               LD  + +ILR  V ++     +P    ++E V IA         K +N VL    R
Sbjct: 69  -IKSLDSYVLNILRITVYQIKFLDKIPNFAAVNEAVEIAKKEKSVGASKLVNGVLRNYLR 127

Query: 156 KEEIK 160
             + K
Sbjct: 128 NLDKK 132


>gi|108799351|ref|YP_639548.1| Fmu (Sun) [Mycobacterium sp. MCS]
 gi|119868467|ref|YP_938419.1| Fmu (Sun) domain-containing protein [Mycobacterium sp. KMS]
 gi|108769770|gb|ABG08492.1| Fmu (Sun) [Mycobacterium sp. MCS]
 gi|119694556|gb|ABL91629.1| Fmu (Sun) domain protein [Mycobacterium sp. KMS]
          Length = 455

 Score = 80.1 bits (197), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 33/168 (19%), Positives = 57/168 (33%), Gaps = 18/168 (10%)

Query: 6   NKKDLKLSHRRGI----ARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVY 61
            +   +    R      AR  A   L             +SE + Y   A   L  E   
Sbjct: 2   TRPPHRPQRNRRKPLDPARRVAFDVL-----------RAVSERDAYANLALPALLNERGL 50

Query: 62  LHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSV 121
              D  +   + +G    +  +D +I +         R+D +L  +LR G  +L+    V
Sbjct: 51  DGRDAAFATELTYGTCRSRGLLDAVIEAA--AGRPVDRIDPVLLDLLRLGTYQLL-RTRV 107

Query: 122 PVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRSGCVSAIT 169
                +S  V  A   F      F+N VL K++ ++E      ++   
Sbjct: 108 EPHAAVSTTVEQAGIEFDTARAGFVNGVLRKIAGRDEQSWVAELAPPA 155


>gi|332685780|ref|YP_004455554.1| ribosomal RNA small subunit methyltransferase B [Melissococcus
           plutonius ATCC 35311]
 gi|332369789|dbj|BAK20745.1| ribosomal RNA small subunit methyltransferase B [Melissococcus
           plutonius ATCC 35311]
          Length = 453

 Score = 80.1 bits (197), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 32/152 (21%), Positives = 61/152 (40%), Gaps = 22/152 (14%)

Query: 10  LKLSHR--RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLE 67
           +K +++  +   R AA+QA+           E I +   Y      E+   S     D  
Sbjct: 1   MKNTNKNIKSSVRDAALQAI-----------ERIDKGGAYSNLLLNEMIQSSQLGEKDSR 49

Query: 68  WFRVIIHGVMDRKQHIDLLISSCLTEKWSFS---RLDMILCSILRAGVLELIECHSVPVE 124
            F  I++G + RK  ++  + + + ++       R+      +L     +L+    VP  
Sbjct: 50  LFTEIVYGTISRKLLLEYYLDTFIHKRKKVEHWVRM------LLILSFYQLLYLDKVPDH 103

Query: 125 VIISEYVCIAHDFFYGDEPKFINAVLDKVSRK 156
            +I+E V IA         KF+N +L  + R+
Sbjct: 104 AVINEAVEIAKRRGNLGTGKFVNGILRSLQRR 135


>gi|126435009|ref|YP_001070700.1| Fmu (Sun) domain-containing protein [Mycobacterium sp. JLS]
 gi|126234809|gb|ABN98209.1| Fmu (Sun) domain protein [Mycobacterium sp. JLS]
          Length = 455

 Score = 80.1 bits (197), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 33/168 (19%), Positives = 57/168 (33%), Gaps = 18/168 (10%)

Query: 6   NKKDLKLSHRRGI----ARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVY 61
            +   +    R      AR  A   L             +SE + Y   A   L  E   
Sbjct: 2   TRPPHRPQRNRRKPLDPARRVAFDVL-----------RAVSERDAYANLALPALLNERGL 50

Query: 62  LHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSV 121
              D  +   + +G    +  +D +I +         R+D +L  +LR G  +L+    V
Sbjct: 51  DGRDAAFATELTYGTCRSRGLLDAVIEAA--AGRPVDRIDPVLLDLLRLGTYQLL-RTRV 107

Query: 122 PVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRSGCVSAIT 169
                +S  V  A   F      F+N VL K++ ++E      ++   
Sbjct: 108 EPHAAVSTTVEQAGIEFDTARAGFVNGVLRKIAGRDEQSWVAELAPPA 155


>gi|157692254|ref|YP_001486716.1| rRNA SAM-dependent methyltransferase RmsB [Bacillus pumilus
           SAFR-032]
 gi|157681012|gb|ABV62156.1| rRNA SAM-dependent methyltransferase RmsB [Bacillus pumilus
           SAFR-032]
          Length = 447

 Score = 80.1 bits (197), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 21/142 (14%), Positives = 54/142 (38%), Gaps = 14/142 (9%)

Query: 15  RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74
           ++   R  A+ AL +++     +  ++      +  AD            D      +++
Sbjct: 2   KKSNVREVALDALIKLEQNQAYSNLLLQSVMKDKDLADQ-----------DKPLLTELVY 50

Query: 75  GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134
           G +  K  +D +++  + +     ++   +  +LR  + +++    +P    I E V + 
Sbjct: 51  GTLQNKLALDYMLAPFVKK---PQKVAPWVMQLLRMSLYQMVYLEKIPDRAAIHEAVELT 107

Query: 135 HDFFYGDEPKFINAVLDKVSRK 156
               +      +N VL  V R+
Sbjct: 108 KKRGHKGISSLVNGVLRSVQRE 129


>gi|223986295|ref|ZP_03636307.1| hypothetical protein HOLDEFILI_03617 [Holdemania filiformis DSM
           12042]
 gi|223961734|gb|EEF66234.1| hypothetical protein HOLDEFILI_03617 [Holdemania filiformis DSM
           12042]
          Length = 115

 Score = 80.1 bits (197), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 35/127 (27%), Positives = 57/127 (44%), Gaps = 15/127 (11%)

Query: 27  LYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLL 86
           LYQ  ++     EII E    +     ELD          ++ R++I   +D +      
Sbjct: 4   LYQHRLLNKPMDEIIEEVMEMKTG---ELD----------DFSRILILDTLDNENRYIQY 50

Query: 87  ISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFI 146
           I+  L + WSF RL ++  +IL     EL    +    +II E V +A D+   +  + I
Sbjct: 51  INETL-KDWSFERLGVLEQAILLMACSELDH-QTASAAIIIDEAVRLAKDYCDDEAYRLI 108

Query: 147 NAVLDKV 153
           N VLD++
Sbjct: 109 NGVLDRI 115


>gi|237756907|ref|ZP_04585380.1| transcription termination factor [Sulfurihydrogenibium
           yellowstonense SS-5]
 gi|237690928|gb|EEP60063.1| transcription termination factor [Sulfurihydrogenibium
           yellowstonense SS-5]
          Length = 169

 Score = 80.1 bits (197), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 32/169 (18%), Positives = 68/169 (40%), Gaps = 24/169 (14%)

Query: 14  HRR--GIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71
            +R    AR  +++ L+  D        ++ E+   +            +     E+   
Sbjct: 13  RKRLLKAARDLSMRVLFAYDFRKEDLFNVLEEFLNTK-----------KFPSEIKEYVLK 61

Query: 72  IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELI---------ECHSVP 122
           +I+   +  Q +D +I S L + W F R+  I  ++LR GV EL+         E     
Sbjct: 62  VINFYNENSQEVDDIIKSHL-KNWRFERIGYIERAVLRLGVSELLIIHSKEESKELKDKE 120

Query: 123 VEVIISEYVCIAHDFFYGD-EPKFINAVLDKVSRKEEIKRSGCVSAITQ 170
           + ++  + + +   +       KF+N +L K++++ E   +     +TQ
Sbjct: 121 IRILFLDLLDLVECYTNSKLSVKFVNGILGKINKELEQNENSIHIGLTQ 169


>gi|295094725|emb|CBK83816.1| ribosomal RNA small subunit methyltransferase RsmB [Coprococcus sp.
           ART55/1]
          Length = 445

 Score = 79.8 bits (196), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 26/128 (20%), Positives = 53/128 (41%), Gaps = 2/128 (1%)

Query: 31  DIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSC 90
           +++  +  +I   +        T L         D  +   ++ GV +++  +D +I+  
Sbjct: 7   EVVLTTLLDIEKNHTFSNIALGTALRANQFMSKQDRAYITRMVEGVTEQRIKLDYIINQF 66

Query: 91  LTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVL 150
              K   ++   ++  +LR G  EL    SVP     +  V +A D  +G    F+N VL
Sbjct: 67  SKTK--VNKCKPLIRCVLRMGTYELFFMDSVPDSAACNLSVKLAVDHGFGSLRGFVNGVL 124

Query: 151 DKVSRKEE 158
             ++R  +
Sbjct: 125 RNIARNRD 132


>gi|168182584|ref|ZP_02617248.1| ribosomal RNA small subunit methyltransferase B [Clostridium
           botulinum Bf]
 gi|182674127|gb|EDT86088.1| ribosomal RNA small subunit methyltransferase B [Clostridium
           botulinum Bf]
          Length = 442

 Score = 79.8 bits (196), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 27/143 (18%), Positives = 54/143 (37%), Gaps = 14/143 (9%)

Query: 19  ARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMD 78
           AR  A+  L  +      +  ++S+        D            D      I++G + 
Sbjct: 4   AREVALDVLKAVLFESAYSNIVLSKKLNKSNLKDN-----------DKALITEIVYGTLK 52

Query: 79  RKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFF 138
            K+ +D++I S L        +D  + +ILR  + ++     +P    ++E V ++    
Sbjct: 53  YKETLDIIIQSYLRN--PIKTMDKNIINILRITIYQIRYLDKIPSFAAVNEAVEMSKKIS 110

Query: 139 YGDEPKFINAVLDKVSRKEEIKR 161
                K +N VL    R  + K+
Sbjct: 111 IKYS-KLVNGVLRNYIRTYKNKK 132


>gi|42560661|ref|NP_975112.1| transcription termination factor nusB [Mycoplasma mycoides subsp.
           mycoides SC str. PG1]
 gi|42492157|emb|CAE76754.1| transcription termination factor nusB [Mycoplasma mycoides subsp.
           mycoides SC str. PG1]
          Length = 132

 Score = 79.8 bits (196), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 30/136 (22%), Positives = 62/136 (45%), Gaps = 14/136 (10%)

Query: 20  RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79
           R   +QA Y+ +++  S   I  +           LD      + D+ +    I+ + ++
Sbjct: 11  RKLLIQAFYKYELLNASIDYIHQDI----------LDDVQNIKNKDVLFE---INQISEK 57

Query: 80  KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139
           +  +   I+  ++  W + R+  ++ +IL  G  E++   + P  V I+E V    +   
Sbjct: 58  QTDLINHININISSSWKWDRIPAVIRAILIVGTYEILYT-NTPKSVTINEMVKYVKEIEP 116

Query: 140 GDEPKFINAVLDKVSR 155
             + KF+NAVLDK+ +
Sbjct: 117 DFDYKFVNAVLDKLVK 132


>gi|116074285|ref|ZP_01471547.1| transcription antitermination protein NusB [Synechococcus sp.
           RS9916]
 gi|116069590|gb|EAU75342.1| transcription antitermination protein NusB [Synechococcus sp.
           RS9916]
          Length = 213

 Score = 79.8 bits (196), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 23/78 (29%), Positives = 37/78 (47%), Gaps = 2/78 (2%)

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
           VM+++  ID  +   + E W  SRL  I   ILR  V++       P  V  +E V +A+
Sbjct: 127 VMEQRSSIDARLDGVM-EGWRLSRLPRIDRDILRLAVVDFT-SLKTPSAVACNEAVELAN 184

Query: 136 DFFYGDEPKFINAVLDKV 153
            +      + IN VL ++
Sbjct: 185 RYSDDQGRRMINGVLRRL 202


>gi|71083732|ref|YP_266452.1| antitermination protein NusB [Candidatus Pelagibacter ubique
           HTCC1062]
 gi|71062845|gb|AAZ21848.1| Antitermination protein NusB [Candidatus Pelagibacter ubique
           HTCC1062]
          Length = 134

 Score = 79.8 bits (196), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 28/117 (23%), Positives = 59/117 (50%), Gaps = 3/117 (2%)

Query: 40  IISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSR 99
           II +     F  DT+L           ++ + ++ G ++R + I   +   L+E    + 
Sbjct: 15  IIQKLYGNFFNDDTDLTFPKHRFK---KFIKDVVLGTIERDEVIKEEVKKYLSEDLELTN 71

Query: 100 LDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRK 156
           LD +   I+++ + E +    V  ++II EY+  ++ F    + K++NA+LDK+++K
Sbjct: 72  LDQVFQVIVKSAIFEFLYKPKVSSKIIIKEYLDASNFFLEDGQTKYLNAILDKIAKK 128


>gi|332981565|ref|YP_004463006.1| sun protein [Mahella australiensis 50-1 BON]
 gi|332699243|gb|AEE96184.1| sun protein [Mahella australiensis 50-1 BON]
          Length = 447

 Score = 79.8 bits (196), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 27/141 (19%), Positives = 54/141 (38%), Gaps = 15/141 (10%)

Query: 18  IARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVM 77
            AR AA++ L           +     E      D  L        +D  +   +++GV 
Sbjct: 4   KARNAALKLL-----RDIDIKKAYINLEIKPALKDNSLST------LDRAFITDMVYGVT 52

Query: 78  DRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDF 137
             +  +D LI        +       + +ILR G+ +++    VP        V +A  +
Sbjct: 53  RYRLTLDWLIKRYSRGGKA----SPWIRNILRMGMYQILYMDRVPDFAACDSSVELAKKY 108

Query: 138 FYGDEPKFINAVLDKVSRKEE 158
               E  ++NAVL ++ ++++
Sbjct: 109 AGQREAGYVNAVLRRLIQEKD 129


>gi|313885233|ref|ZP_07818985.1| ribosomal RNA small subunit methyltransferase B [Eremococcus
           coleocola ACS-139-V-Col8]
 gi|312619924|gb|EFR31361.1| ribosomal RNA small subunit methyltransferase B [Eremococcus
           coleocola ACS-139-V-Col8]
          Length = 456

 Score = 79.8 bits (196), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 31/154 (20%), Positives = 65/154 (42%), Gaps = 20/154 (12%)

Query: 12  LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELD---VESVYLHVDLEW 68
           +  ++ +AR  A QA +Q  +       I+ + E +   ++  LD    E+    VD   
Sbjct: 1   MKVKKNVARKLADQARFQALL-------ILDQVENHGGYSNVLLDRFHQETSLSPVDTNL 53

Query: 69  FRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMIL---CSILRAGVLELIECHSVPVEV 125
              +++GV+ R+  +D  ++  +  K        +     S+LR  + + I    +P   
Sbjct: 54  VVKLVYGVIQRRYSLDYFLAPFIKGK-------KVDDWVASLLRLSIYQFIYLDRIPDHA 106

Query: 126 IISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEI 159
           + S+ V +A    +     F+N VL    R+ ++
Sbjct: 107 VFSQAVEMAKLIGHAGLGGFVNGVLRNFQRRADL 140


>gi|311068095|ref|YP_003973018.1| RNA-binding Sun protein; 16S rRNA m5C967 methyltransferase,
           S-adenosyl-L-methionine-dependent [Bacillus atrophaeus
           1942]
 gi|310868612|gb|ADP32087.1| RNA-binding Sun protein; 16S rRNA m5C967 methyltransferase,
           S-adenosyl-L-methionine-dependent [Bacillus atrophaeus
           1942]
          Length = 447

 Score = 79.8 bits (196), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 24/142 (16%), Positives = 52/142 (36%), Gaps = 14/142 (9%)

Query: 15  RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74
           ++   R  A++AL ++D     +  ++         +D            D      +++
Sbjct: 2   KKNNVRDIALEALMKLDQNQAYSNLLLKSVIKSNELSDQ-----------DRGLLTELVY 50

Query: 75  GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134
           G +  K  +D ++   + +          +  +LR  + ++     +P    I E V IA
Sbjct: 51  GTLQNKTALDYMLKPFINKPAKVK---PWVIQLLRLSLYQMEYLEKIPHRAAIHEAVEIA 107

Query: 135 HDFFYGDEPKFINAVLDKVSRK 156
               +     F+N VL  V R+
Sbjct: 108 KKRGHKGIASFVNGVLRSVQRE 129


>gi|144575303|gb|AAZ53536.2| hypothetical protein MHP7448_0162 [Mycoplasma hyopneumoniae 7448]
          Length = 216

 Score = 79.8 bits (196), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 35/159 (22%), Positives = 64/159 (40%), Gaps = 21/159 (13%)

Query: 5   DNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHV 64
           + K + +   +R + R+  +  +Y   +   +    I E +T  F    +      ++  
Sbjct: 73  NKKIEFRNLTKRRLGRMGVISIIYIWQLFDKNID--IKEIKTKYFELTIDQLKLLNFIKK 130

Query: 65  DLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVE 124
           +  + R +              I+  L   W++ R+  ++ SIL  G  EL     VP  
Sbjct: 131 NYSFLRKV--------------INLQLKSNWNWERILPLIRSILLVGAAELFF---VPSR 173

Query: 125 VIISEYVCIAHDFF--YGDEPKFINAVLDKVSRKEEIKR 161
           ++ +E V I   F     +E  F+NAVL K+    EIK 
Sbjct: 174 IVFNEAVEITKIFSIAGDNEFCFVNAVLQKIYNYYEIKN 212


>gi|72080501|ref|YP_287559.1| hypothetical protein MHP7448_0162 [Mycoplasma hyopneumoniae 7448]
          Length = 219

 Score = 79.8 bits (196), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 35/159 (22%), Positives = 64/159 (40%), Gaps = 21/159 (13%)

Query: 5   DNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHV 64
           + K + +   +R + R+  +  +Y   +   +    I E +T  F    +      ++  
Sbjct: 76  NKKIEFRNLTKRRLGRMGVISIIYIWQLFDKNID--IKEIKTKYFELTIDQLKLLNFIKK 133

Query: 65  DLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVE 124
           +  + R +              I+  L   W++ R+  ++ SIL  G  EL     VP  
Sbjct: 134 NYSFLRKV--------------INLQLKSNWNWERILPLIRSILLVGAAELFF---VPSR 176

Query: 125 VIISEYVCIAHDFF--YGDEPKFINAVLDKVSRKEEIKR 161
           ++ +E V I   F     +E  F+NAVL K+    EIK 
Sbjct: 177 IVFNEAVEITKIFSIAGDNEFCFVNAVLQKIYNYYEIKN 215


>gi|54020397|ref|YP_115733.1| hypothetical protein mhp220 [Mycoplasma hyopneumoniae 232]
 gi|53987570|gb|AAV27771.1| conserved hypothetical protein [Mycoplasma hyopneumoniae 232]
          Length = 253

 Score = 79.8 bits (196), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 35/159 (22%), Positives = 64/159 (40%), Gaps = 21/159 (13%)

Query: 5   DNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHV 64
           + K + +   +R + R+  +  +Y   +   +    I E +T  F    +      ++  
Sbjct: 110 NKKIEFRNLTKRRLGRMGVISIIYIWQLFDKNID--IKEIKTKYFELTIDQLKLLNFIKK 167

Query: 65  DLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVE 124
           +  + R +              I+  L   W++ R+  ++ SIL  G  EL     VP  
Sbjct: 168 NYSFLRKV--------------INLQLKSNWNWERILPLIRSILLVGAAELFF---VPSR 210

Query: 125 VIISEYVCIAHDFF--YGDEPKFINAVLDKVSRKEEIKR 161
           ++ +E V I   F     +E  F+NAVL K+    EIK 
Sbjct: 211 IVFNEAVEITKIFSIAGDNEFCFVNAVLQKIYNYYEIKN 249


>gi|144227492|gb|AAZ44249.2| hypothetical protein MHJ_0158 [Mycoplasma hyopneumoniae J]
          Length = 253

 Score = 79.8 bits (196), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 35/159 (22%), Positives = 64/159 (40%), Gaps = 21/159 (13%)

Query: 5   DNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHV 64
           + K + +   +R + R+  +  +Y   +   +    I E +T  F    +      ++  
Sbjct: 110 NKKIEFRNLTKRRLGRMGVISVIYIWQLFDKNID--IKEIKTKYFELTIDQLKLLNFIKK 167

Query: 65  DLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVE 124
           +  + R +              I+  L   W++ R+  ++ SIL  G  EL     VP  
Sbjct: 168 NYSFLRKV--------------INLQLKSNWNWERILPLIRSILLVGAAELFF---VPSR 210

Query: 125 VIISEYVCIAHDFF--YGDEPKFINAVLDKVSRKEEIKR 161
           ++ +E V I   F     +E  F+NAVL K+    EIK 
Sbjct: 211 IVFNEAVEITKIFSIAGDNEFCFVNAVLQKIYNYYEIKN 249


>gi|166032716|ref|ZP_02235545.1| hypothetical protein DORFOR_02431 [Dorea formicigenerans ATCC
           27755]
 gi|166027073|gb|EDR45830.1| hypothetical protein DORFOR_02431 [Dorea formicigenerans ATCC
           27755]
          Length = 433

 Score = 79.4 bits (195), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 24/105 (22%), Positives = 49/105 (46%), Gaps = 2/105 (1%)

Query: 55  LDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLE 114
           LD        +  +   ++ G ++R+  ID +I+     K   ++   ++ +ILR+ V +
Sbjct: 33  LDKYQYLEKRERAFITRVVEGTLERQIEIDYIINQF--SKVKVNKQKPVIRTILRSSVYQ 90

Query: 115 LIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEI 159
           L     VP   + +E V +A    + +   F+N VL  +SR  ++
Sbjct: 91  LKYMDHVPDSAVCNEAVKLAGKKGFVNLKGFVNGVLRNISRNLDM 135


>gi|291458605|ref|ZP_06597995.1| ribosomal RNA small subunit methyltransferase B [Oribacterium sp.
           oral taxon 078 str. F0262]
 gi|291419138|gb|EFE92857.1| ribosomal RNA small subunit methyltransferase B [Oribacterium sp.
           oral taxon 078 str. F0262]
          Length = 427

 Score = 79.4 bits (195), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 29/158 (18%), Positives = 64/158 (40%), Gaps = 14/158 (8%)

Query: 3   IQDNKKDLKLSHRRGIA--RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESV 60
           + +  K ++    R     R  A+  L+          +I  + +        EL     
Sbjct: 1   MGEGGKRMRGERIRRSEDPRNTALSILF----------DIFEKGKHSHIALREELSKYKA 50

Query: 61  YLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHS 120
               D  +   +++G ++R   +D  +  C   +    ++  +L ++LR G  +++    
Sbjct: 51  MPERDRAFLTRLVNGTVERSVTLDYFLDRC--SRLKVKKMRPLLRTLLRMGSFQILFSDR 108

Query: 121 VPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEE 158
           VP    ++E V ++H         F+NAVL ++S ++E
Sbjct: 109 VPDSAAVNESVKLSHRRGLSGLSSFVNAVLRRISGEKE 146


>gi|149920268|ref|ZP_01908739.1| hypothetical protein PPSIR1_08951 [Plesiocystis pacifica SIR-1]
 gi|149818855|gb|EDM78295.1| hypothetical protein PPSIR1_08951 [Plesiocystis pacifica SIR-1]
          Length = 169

 Score = 79.4 bits (195), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 28/156 (17%), Positives = 59/156 (37%), Gaps = 16/156 (10%)

Query: 1   MTIQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELD---- 56
           M+  + K        R   R  A+  +  ++  G  +   +  + T R   + + D    
Sbjct: 1   MSGGEGKP-----TSRARGRELALWLMCHLERRGEGSRAALELFWTERPEFEVDDDFLGV 55

Query: 57  -----VESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAG 111
                 + +       W R +    ++    +D  I +  +E+W   R+D +  ++LR  
Sbjct: 56  AGPQMRDIIEDSSARRWARRLTEAYLEDAAAVDQAIGAA-SERWRIERMDRVDRNVLRLA 114

Query: 112 VLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFIN 147
            +EL      P  V+++E V +A  +       F+N
Sbjct: 115 AVELR-TQKTPRNVVVAEAVRLAARYGSERSAAFVN 149


>gi|260436645|ref|ZP_05790615.1| transcription antitermination factor NusB [Synechococcus sp. WH
           8109]
 gi|260414519|gb|EEX07815.1| transcription antitermination factor NusB [Synechococcus sp. WH
           8109]
          Length = 211

 Score = 79.4 bits (195), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 23/81 (28%), Positives = 39/81 (48%), Gaps = 2/81 (2%)

Query: 73  IHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVC 132
           +  V+ +++ ID  +   + E W  +RL  I   ILR  V++L E    P  V  +E V 
Sbjct: 124 VQKVLTQREGIDRRLDQVM-EGWRLTRLPRIDRDILRLAVVDL-ESLRTPAPVAFNEAVE 181

Query: 133 IAHDFFYGDEPKFINAVLDKV 153
           +A+ +      + IN VL + 
Sbjct: 182 LANRYSDDQGRRMINGVLRRF 202


>gi|168186789|ref|ZP_02621424.1| ribosomal RNA small subunit methyltransferase B [Clostridium
           botulinum C str. Eklund]
 gi|169295225|gb|EDS77358.1| ribosomal RNA small subunit methyltransferase B [Clostridium
           botulinum C str. Eklund]
          Length = 443

 Score = 79.4 bits (195), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 26/125 (20%), Positives = 49/125 (39%), Gaps = 2/125 (1%)

Query: 36  STTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKW 95
              E++ +   Y      +   ++     D      I++G +  K  ID ++++ L +  
Sbjct: 10  DVLEMVFKKNAYSNIVLRQTLNKNKIDDKDKGLITEIVYGTIKYKYTIDTILNNYLKKG- 68

Query: 96  SFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSR 155
               LD  + +ILR  V ++     +P    ++E V IA         K +N VL    R
Sbjct: 69  -IKSLDSYVLNILRITVYQIKFLDKIPNFAAVNEAVEIAKKQRSVGASKLVNGVLRNYLR 127

Query: 156 KEEIK 160
             + K
Sbjct: 128 NLDKK 132


>gi|312601103|gb|ADQ90358.1| hypothetical protein MHP168_141 [Mycoplasma hyopneumoniae 168]
          Length = 231

 Score = 79.4 bits (195), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 35/159 (22%), Positives = 64/159 (40%), Gaps = 21/159 (13%)

Query: 5   DNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHV 64
           + K + +   +R + R+  +  +Y   +   +    I E +T  F    +      ++  
Sbjct: 88  NKKIEFRNLTKRRLGRMGVISIIYIWQLFDKNID--IKEIKTKYFELTIDQLKLLNFIKK 145

Query: 65  DLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVE 124
           +  + R +              I+  L   W++ R+  ++ SIL  G  EL     VP  
Sbjct: 146 NYSFLRKV--------------INLQLKSNWNWERILPLIRSILLVGAAELFF---VPSR 188

Query: 125 VIISEYVCIAHDFF--YGDEPKFINAVLDKVSRKEEIKR 161
           ++ +E V I   F     +E  F+NAVL K+    EIK 
Sbjct: 189 IVFNEAVEITKIFSIAGDNEFCFVNAVLQKIYNYYEIKN 227


>gi|71893514|ref|YP_278960.1| hypothetical protein MHJ_0158 [Mycoplasma hyopneumoniae J]
          Length = 199

 Score = 79.0 bits (194), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 35/159 (22%), Positives = 64/159 (40%), Gaps = 21/159 (13%)

Query: 5   DNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHV 64
           + K + +   +R + R+  +  +Y   +   +    I E +T  F    +      ++  
Sbjct: 56  NKKIEFRNLTKRRLGRMGVISVIYIWQLFDKNID--IKEIKTKYFELTIDQLKLLNFIKK 113

Query: 65  DLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVE 124
           +  + R +              I+  L   W++ R+  ++ SIL  G  EL     VP  
Sbjct: 114 NYSFLRKV--------------INLQLKSNWNWERILPLIRSILLVGAAELFF---VPSR 156

Query: 125 VIISEYVCIAHDFF--YGDEPKFINAVLDKVSRKEEIKR 161
           ++ +E V I   F     +E  F+NAVL K+    EIK 
Sbjct: 157 IVFNEAVEITKIFSIAGDNEFCFVNAVLQKIYNYYEIKN 195


>gi|326790876|ref|YP_004308697.1| sun protein [Clostridium lentocellum DSM 5427]
 gi|326541640|gb|ADZ83499.1| sun protein [Clostridium lentocellum DSM 5427]
          Length = 445

 Score = 79.0 bits (194), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 18/94 (19%), Positives = 45/94 (47%), Gaps = 2/94 (2%)

Query: 65  DLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVE 124
           D  +   +++G +  +  +D +++     K    R+  ++ +++R  + +++    VP  
Sbjct: 38  DKGFVTEVVYGTLKYQIKLDYILNQF--SKTPVHRMKPLIRNVMRMSLYQMLYLDKVPTS 95

Query: 125 VIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEE 158
            II+E V I     + +   F+N +L  + R+ E
Sbjct: 96  AIINEAVKIVKKRKFQNLSGFVNGLLRNIDRQRE 129


>gi|255525650|ref|ZP_05392583.1| sun protein [Clostridium carboxidivorans P7]
 gi|296185410|ref|ZP_06853820.1| ribosomal RNA small subunit methyltransferase B [Clostridium
           carboxidivorans P7]
 gi|255510636|gb|EET86943.1| sun protein [Clostridium carboxidivorans P7]
 gi|296050244|gb|EFG89668.1| ribosomal RNA small subunit methyltransferase B [Clostridium
           carboxidivorans P7]
          Length = 442

 Score = 79.0 bits (194), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 27/141 (19%), Positives = 54/141 (38%), Gaps = 14/141 (9%)

Query: 19  ARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMD 78
           AR  AV+ L ++      +  +I +        D            D      I++G + 
Sbjct: 4   ARKTAVKILKEVFYGNSYSNMVIGKELNRSDMNDK-----------DKALVTEIVYGTLK 52

Query: 79  RKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFF 138
            K  ID +++  +       +LD+ + +ILR  + ++     +P   +++E V +A    
Sbjct: 53  YKYTIDTILNYYIKSG--LKKLDVDILNILRISIYQIRYLDKIPEFAVVNEAVELAKR-K 109

Query: 139 YGDEPKFINAVLDKVSRKEEI 159
                + +N VL    R   I
Sbjct: 110 AVKTARLVNGVLRSYLRSNNI 130


>gi|194333562|ref|YP_002015422.1| sun protein [Prosthecochloris aestuarii DSM 271]
 gi|194311380|gb|ACF45775.1| sun protein [Prosthecochloris aestuarii DSM 271]
          Length = 449

 Score = 79.0 bits (194), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 31/136 (22%), Positives = 57/136 (41%), Gaps = 13/136 (9%)

Query: 19  ARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMD 78
           AR  A+  L     + C   E+ SE   +R+    +          D      +++G++ 
Sbjct: 9   AREIALLTL-----VECEREEVKSEQALHRYLNKYKT------ARNDSALATELVNGILR 57

Query: 79  RKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFF 138
            +Q ID +I++    K    +    L +ILR GV +L     +P    +S+ V +A  + 
Sbjct: 58  FRQSIDSIITAFYHHK--LKKASPFLVNILRIGVYQLRYLDRIPDWAAVSQCVDLARKYK 115

Query: 139 YGDEPKFINAVLDKVS 154
                + +N VL  V+
Sbjct: 116 GQHIARIVNGVLRSVA 131


>gi|78211568|ref|YP_380347.1| transcription antitermination protein NusB [Synechococcus sp.
           CC9605]
 gi|78196027|gb|ABB33792.1| NusB family protein [Synechococcus sp. CC9605]
          Length = 211

 Score = 79.0 bits (194), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 23/81 (28%), Positives = 39/81 (48%), Gaps = 2/81 (2%)

Query: 73  IHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVC 132
           +  V+ +++ ID  +   + E W  +RL  I   ILR  V++L E    P  V  +E V 
Sbjct: 124 VQKVLTQREGIDKRLDQVM-EGWRLTRLPRIDRDILRLAVVDL-ESLRTPAPVAFNEAVE 181

Query: 133 IAHDFFYGDEPKFINAVLDKV 153
           +A+ +      + IN VL + 
Sbjct: 182 LANRYSDEQGRRMINGVLRRF 202


>gi|331082369|ref|ZP_08331495.1| ribosomal RNA small subunit methyltransferase B [Lachnospiraceae
           bacterium 6_1_63FAA]
 gi|330400855|gb|EGG80456.1| ribosomal RNA small subunit methyltransferase B [Lachnospiraceae
           bacterium 6_1_63FAA]
          Length = 454

 Score = 79.0 bits (194), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 24/118 (20%), Positives = 50/118 (42%), Gaps = 2/118 (1%)

Query: 39  EIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFS 98
           EI  E +       + L+        +  +   +  G ++ K  +D ++    +      
Sbjct: 17  EINKEGQHSHLVIRSTLEKYQYLEKQERAFLTRVCEGTLEYKLRLDYILDQYSSV--PVE 74

Query: 99  RLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRK 156
           ++  ++  ILR+ V +L+   +VP   +  E V +A    + +   F+N VL KV+R 
Sbjct: 75  KMKPVIREILRSSVYQLLYMDNVPDSAVCDEAVKLARKKGFYNLTGFVNGVLRKVARD 132


>gi|81299771|ref|YP_399979.1| sun protein [Synechococcus elongatus PCC 7942]
 gi|81168652|gb|ABB56992.1| sun protein [Synechococcus elongatus PCC 7942]
          Length = 451

 Score = 79.0 bits (194), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 33/149 (22%), Positives = 59/149 (39%), Gaps = 14/149 (9%)

Query: 12  LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71
               RG AR  A Q L             I E        D  L   S  +  D      
Sbjct: 2   PRPSRGNARWVAFQTL-----------TTIREGAFADLALDRHLQR-SGLVGADRRLVTE 49

Query: 72  IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
           +++G + R++ +D LI   L  +   ++   +L ++L+ G+ +L     +P    ++E V
Sbjct: 50  LVYGCVRRQRTLDALID--LLAQRPAAQQPPVLRTVLQLGLYQLRYLEQIPTAAAVAETV 107

Query: 132 CIAHDFFYGDEPKFINAVLDKVSRKEEIK 160
            +A     G     +NA+L +  R+ E +
Sbjct: 108 QLAKQLGLGGLSGAVNAILRQYLRQSEER 136


>gi|78221293|ref|YP_383040.1| Fmu, rRNA SAM-dependent methyltransferase:Nop2p [Geobacter
           metallireducens GS-15]
 gi|78192548|gb|ABB30315.1| Fmu, rRNA SAM-dependent methyltransferase:Nop2p [Geobacter
           metallireducens GS-15]
          Length = 446

 Score = 79.0 bits (194), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 30/129 (23%), Positives = 54/129 (41%), Gaps = 12/129 (9%)

Query: 36  STTEIISEYETYRFCADTELDVE---SVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLT 92
           +  +I+   E  R  A+  LD E         D      +++GV+ R+  +D L+ +   
Sbjct: 9   TALDILLRVERDRAFAEQLLDRELSLGTLTGPDRGLLTELVYGVLRRQGTLDFLVDAFAA 68

Query: 93  EKWSFSRLDMILCSIL---RAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAV 149
                SR   +  +IL   R G+ +L     +P    ++E V +A          F+NAV
Sbjct: 69  -----SRSGKLERAILVILRLGLYQLFFLDRIPTSAAVNESVNLAKA-VAPRAAGFVNAV 122

Query: 150 LDKVSRKEE 158
           L +  R+ +
Sbjct: 123 LRRADRERD 131


>gi|194014930|ref|ZP_03053547.1| ribosomal RNA small subunit methyltransferase B [Bacillus pumilus
           ATCC 7061]
 gi|194013956|gb|EDW23521.1| ribosomal RNA small subunit methyltransferase B [Bacillus pumilus
           ATCC 7061]
          Length = 442

 Score = 79.0 bits (194), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 21/137 (15%), Positives = 52/137 (37%), Gaps = 14/137 (10%)

Query: 20  RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79
           R  A+ AL +++     +  ++      +  AD            D      +++G +  
Sbjct: 2   RELALDALIKLEQNQAYSNLLLQSVMKDKDLADQ-----------DKPLLTELVYGTLQN 50

Query: 80  KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139
           K  +D +++  + +     ++   +  +LR  + +++    +P    I E V +     +
Sbjct: 51  KLALDYMLAPFVKK---PQKVAPWVMQLLRMSLYQMVYLEKIPHRAAIHEAVELTKKRGH 107

Query: 140 GDEPKFINAVLDKVSRK 156
                 +N VL  V R+
Sbjct: 108 KGISSLVNGVLRSVQRE 124


>gi|308069674|ref|YP_003871279.1| ribosomal RNA small subunit methyltransferase B (rRNA
           (cytosine-C(5)-)-methyltransferase) [Paenibacillus
           polymyxa E681]
 gi|305858953|gb|ADM70741.1| Ribosomal RNA small subunit methyltransferase B (rRNA
           (cytosine-C(5)-)-methyltransferase) [Paenibacillus
           polymyxa E681]
          Length = 471

 Score = 79.0 bits (194), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 29/147 (19%), Positives = 57/147 (38%), Gaps = 13/147 (8%)

Query: 15  RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74
           R   AR  A+  L  ++  G            Y          ++     D      +++
Sbjct: 23  RNQTAREVALDVLIGVEQEG-----------AYSNLELNRRLQQAGLSASDAGLATELVY 71

Query: 75  GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134
           G + R+  +D  ++  + +    ++L   + S+LR  V +L+    VP   ++SE V IA
Sbjct: 72  GTVARRNTLDYFLNKFVQKG--TAKLQAWVRSLLRMSVYQLVYLDRVPDHAVVSEAVTIA 129

Query: 135 HDFFYGDEPKFINAVLDKVSRKEEIKR 161
               +      +N VL  + R+ +  R
Sbjct: 130 KRRGHQGISGMVNGVLRSMLREPDKLR 156


>gi|123967545|ref|YP_001008403.1| transcription antitermination protein NusB [Prochlorococcus marinus
           str. AS9601]
 gi|123197655|gb|ABM69296.1| Antitermination protein NusB [Prochlorococcus marinus str. AS9601]
          Length = 208

 Score = 79.0 bits (194), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 23/78 (29%), Positives = 34/78 (43%), Gaps = 2/78 (2%)

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
           +++  + ID  I   +   W   RL  I   ILR      I   + PV V   E V +A+
Sbjct: 127 IINNLKSIDSDIDQVMD-GWRLKRLPRIDRDILRLA-YVDINFLNTPVAVACDEAVNLAN 184

Query: 136 DFFYGDEPKFINAVLDKV 153
            +      KFIN VL ++
Sbjct: 185 KYSDLKGRKFINGVLRRL 202


>gi|304437063|ref|ZP_07397026.1| ribosomal RNA small subunit methyltransferase B [Selenomonas sp.
           oral taxon 149 str. 67H29BP]
 gi|304370014|gb|EFM23676.1| ribosomal RNA small subunit methyltransferase B [Selenomonas sp.
           oral taxon 149 str. 67H29BP]
          Length = 449

 Score = 78.6 bits (193), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 23/139 (16%), Positives = 48/139 (34%), Gaps = 14/139 (10%)

Query: 20  RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79
           R  A+Q L            + SE   Y   A  +    +     D  +   +++G +  
Sbjct: 14  RERAMQVL----------LRVHSE-GAYANVALVDALRGAAMAERDRRFLTELVYGTVKA 62

Query: 80  KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139
            + +D++I   +       +    +  +LR G  ++     +P   +    V +A     
Sbjct: 63  GETLDVMIRRYVA---DLKKAQPPIRELLRLGFYQIFFMDKIPSSAVCHTAVELAKKHGG 119

Query: 140 GDEPKFINAVLDKVSRKEE 158
                F+N VL    R+ +
Sbjct: 120 KGAASFVNGVLRTALREPQ 138


>gi|33864549|ref|NP_896108.1| transcription antitermination protein NusB [Synechococcus sp. WH
           8102]
 gi|33632072|emb|CAE06525.1| NusB family protein [Synechococcus sp. WH 8102]
          Length = 211

 Score = 78.6 bits (193), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 24/81 (29%), Positives = 40/81 (49%), Gaps = 2/81 (2%)

Query: 73  IHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVC 132
           +  V++++  ID  + S + E W  SRL  +   ILR  V++L +    P  V  SE V 
Sbjct: 124 VSCVLNKRDRIDAELDSVM-EGWRLSRLPRLDRDILRLAVVDLRD-LGTPAPVAFSEAVE 181

Query: 133 IAHDFFYGDEPKFINAVLDKV 153
           +A+ +      + IN VL + 
Sbjct: 182 LANRYSDEQGRRMINGVLRRF 202


>gi|78183594|ref|YP_376028.1| transcription antitermination protein NusB [Synechococcus sp.
           CC9902]
 gi|78167888|gb|ABB24985.1| NusB antitermination factor [Synechococcus sp. CC9902]
          Length = 211

 Score = 78.6 bits (193), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 22/78 (28%), Positives = 37/78 (47%), Gaps = 2/78 (2%)

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
           V+ +++ ID  +   + E W   RL  I   ILR  V++L +    P  V  +E V +A+
Sbjct: 127 VIRQRESIDARLDQVM-EGWRLGRLPRIDRDILRLAVVDL-QTMGTPAPVAFNEAVELAN 184

Query: 136 DFFYGDEPKFINAVLDKV 153
            +      + IN VL + 
Sbjct: 185 RYSDEQGRRMINGVLRRF 202


>gi|91763232|ref|ZP_01265196.1| Antitermination protein NusB [Candidatus Pelagibacter ubique
           HTCC1002]
 gi|91717645|gb|EAS84296.1| Antitermination protein NusB [Candidatus Pelagibacter ubique
           HTCC1002]
          Length = 134

 Score = 78.6 bits (193), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 28/117 (23%), Positives = 59/117 (50%), Gaps = 3/117 (2%)

Query: 40  IISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSR 99
           II +     F  DT+L           ++ + ++ G ++R + I   +   L+E    + 
Sbjct: 15  IIQKLYGNFFNDDTDLTFPKHRFK---KFIKDVVLGTIERDEVIKEEVRKYLSEDIELTN 71

Query: 100 LDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRK 156
           LD +   I+++ + E +    V  ++II EY+  ++ F    + K++NA+LDK+++K
Sbjct: 72  LDQVFQVIVKSAIFEFLYKPKVSSKIIIKEYLNASNFFLEDGQTKYLNAILDKIAKK 128


>gi|194246432|ref|YP_002004071.1| Transcription termination factor [Candidatus Phytoplasma mali]
 gi|194246854|ref|YP_002004495.1| Transcription termination factor [Candidatus Phytoplasma mali]
 gi|193806789|emb|CAP18216.1| Transcription termination factor [Candidatus Phytoplasma mali]
 gi|193807213|emb|CAP18656.1| Transcription termination factor [Candidatus Phytoplasma mali]
          Length = 142

 Score = 78.6 bits (193), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 30/136 (22%), Positives = 56/136 (41%), Gaps = 10/136 (7%)

Query: 39  EIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFS 98
           E++     Y F       +        L +F+ II     +   ID +I   L   +   
Sbjct: 10  EVLILLYQYDFYLQDLKFLNYTTKPQSLVFFQKII----PKITLIDEIIQKNLY-NYQLK 64

Query: 99  RLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFF---YGDEPKFINAVLDKVSR 155
           RL+ +  +ILR    EL+E   +   +II E + +   +       + KF N +LD++  
Sbjct: 65  RLNKVDQAILRLATFELLENKII-APIIIDEALELTKRYSELDDQKQHKFNNKILDQIYH 123

Query: 156 KEE-IKRSGCVSAITQ 170
             + +K +  V  I++
Sbjct: 124 SLKSLKTNLEVKKISE 139


>gi|291549490|emb|CBL25752.1| ribosomal RNA small subunit methyltransferase RsmB [Ruminococcus
           torques L2-14]
          Length = 463

 Score = 78.6 bits (193), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 28/141 (19%), Positives = 57/141 (40%), Gaps = 16/141 (11%)

Query: 20  RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79
           R   ++ L +I   G  + +I+ +           L         +  +   ++ G ++ 
Sbjct: 8   REVVLEILMEITENGAYSHKILGDV----------LSKYQYLEKRERAFITRVVEGTLEH 57

Query: 80  KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA--HDF 137
              ID +++     K    ++  ++ ++LR+ V +L    SVP   + SE V +A    F
Sbjct: 58  MIEIDYILNQ--ISKTKVKKMKPVIRNLLRSSVYQLKYMDSVPDHAVCSEAVKLAVRKGF 115

Query: 138 FYGDEPKFINAVLDKVSRKEE 158
                  ++N VL  V RK +
Sbjct: 116 SGLR--GYVNGVLRNVVRKMD 134


>gi|197119890|ref|YP_002140317.1| 16S rRNA (5-methyl-C967)-methyltransferase [Geobacter bemidjiensis
           Bem]
 gi|197089250|gb|ACH40521.1| 16S rRNA (5-methyl-C967)-methyltransferase [Geobacter bemidjiensis
           Bem]
          Length = 448

 Score = 78.6 bits (193), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 34/152 (22%), Positives = 59/152 (38%), Gaps = 21/152 (13%)

Query: 20  RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79
           R AA   L            I  E        D EL  + +    D      +++GV+ R
Sbjct: 7   RRAAFDIL----------LRIEKEKSFADILIDHELSKD-IIKGADRGLLTELVYGVLRR 55

Query: 80  KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139
           +  +D +IS    +     +L++ +  +LR G+ +      VPV   ++E V +A +   
Sbjct: 56  QGTLDYIISQFSKQ--RPEKLELFVRLLLRLGIYQCFFLDRVPVSAAVNETVNLAKEL-A 112

Query: 140 GDEPKFINAVL-------DKVSRKEEIKRSGC 164
                FINAVL       D ++  +  +R   
Sbjct: 113 PRASGFINAVLRNADRGRDTIAYPDRAERPAE 144


>gi|301063983|ref|ZP_07204448.1| ribosomal RNA small subunit methyltransferase B [delta
           proteobacterium NaphS2]
 gi|300441894|gb|EFK06194.1| ribosomal RNA small subunit methyltransferase B [delta
           proteobacterium NaphS2]
          Length = 447

 Score = 78.6 bits (193), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 19/96 (19%), Positives = 45/96 (46%), Gaps = 2/96 (2%)

Query: 62  LHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSV 121
              D  +   ++ GV+  +  +D ++   +  ++ F ++D  +  ILR  + ++I    V
Sbjct: 35  SERDRAFAVHLVQGVLRWQIRLDWILKQYV--RFPFGKIDPEVLDILRLALFQIIFLDRV 92

Query: 122 PVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKE 157
           P    ++E V  A         +F+N +L ++ R++
Sbjct: 93  PDSAAVNEAVKQADKKGRKHVARFVNGILRQICREK 128


>gi|126695346|ref|YP_001090232.1| transcription antitermination protein NusB [Prochlorococcus marinus
           str. MIT 9301]
 gi|126542389|gb|ABO16631.1| Antitermination protein NusB [Prochlorococcus marinus str. MIT
           9301]
          Length = 205

 Score = 78.6 bits (193), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 23/78 (29%), Positives = 34/78 (43%), Gaps = 2/78 (2%)

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
           +++  + ID  I   +   W   RL  I   ILR      I   + PV V   E V +A+
Sbjct: 127 IINNLKSIDSDIDQAMD-GWRLKRLPRIDRDILRLA-YVDINFLNTPVAVACDEAVNLAN 184

Query: 136 DFFYGDEPKFINAVLDKV 153
            +      KFIN VL ++
Sbjct: 185 KYSDLQGRKFINGVLRRL 202


>gi|261367358|ref|ZP_05980241.1| ribosomal RNA small subunit methyltransferase B [Subdoligranulum
           variabile DSM 15176]
 gi|282570118|gb|EFB75653.1| ribosomal RNA small subunit methyltransferase B [Subdoligranulum
           variabile DSM 15176]
          Length = 437

 Score = 78.2 bits (192), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 28/135 (20%), Positives = 54/135 (40%), Gaps = 13/135 (9%)

Query: 20  RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79
           R  AV+AL   +  G +   + +E +                   D  +   I + V++ 
Sbjct: 4   RRLAVKALLHQEQAGYANLVLDAELKKCT----------PPLEGRDAAFAARIFYTVLEY 53

Query: 80  KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139
           +  +D L+     +    +RLD  + +ILRAG+ +      VP+   ++E V +      
Sbjct: 54  QPLLDFLLDRFSKK--PVARLDAPVRAILRAGLAQARFM-EVPLPAAVNESVKLTKAMGK 110

Query: 140 GDEPKFINAVLDKVS 154
                 +NAVL + +
Sbjct: 111 TSAAGMVNAVLRRAA 125


>gi|229822831|ref|ZP_04448901.1| hypothetical protein GCWU000282_00120 [Catonella morbi ATCC 51271]
 gi|229787644|gb|EEP23758.1| hypothetical protein GCWU000282_00120 [Catonella morbi ATCC 51271]
          Length = 457

 Score = 78.2 bits (192), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 30/160 (18%), Positives = 62/160 (38%), Gaps = 18/160 (11%)

Query: 13  SHRR--GIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFR 70
           + +R     R  A+Q L +ID            ++ Y          +S    VD     
Sbjct: 7   AAKRLKHNVRFQALQLLVEID-----------WHDQYSNVLLNRALSQSELKPVDQGLLV 55

Query: 71  VIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEY 130
            +++G +  +  +D  +   +  K    +L+  + S+LR    +++    +P    I+E 
Sbjct: 56  NLVYGSIQHRLTLDFYLEPFIKGK----KLEPWIRSLLRMTAYQMLYLERIPDHAAINEA 111

Query: 131 VCIAHDFFYGDEPKFINAVLDKVSRKEEIKRSGCVSAITQ 170
           V IA    +      +N VL    R++E++    V+   +
Sbjct: 112 VNIAKLNGHAGLAGLVNGVLRNF-RRQELRSLDSVTDPIE 150


>gi|218132886|ref|ZP_03461690.1| hypothetical protein BACPEC_00747 [Bacteroides pectinophilus ATCC
           43243]
 gi|217991759|gb|EEC57763.1| hypothetical protein BACPEC_00747 [Bacteroides pectinophilus ATCC
           43243]
          Length = 374

 Score = 78.2 bits (192), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 21/98 (21%), Positives = 40/98 (40%), Gaps = 2/98 (2%)

Query: 59  SVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIEC 118
                    +   +  G ++R    D LI    +   S  ++  ++ +I+R    +L   
Sbjct: 40  QYLPKSQRAFISRLAEGTIERSIEEDWLIDHVSSV--STKKMKPVIRNIMRMSAYQLKYM 97

Query: 119 HSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRK 156
            SVPV  + +E V +A    +     F+N VL  ++R 
Sbjct: 98  DSVPVSAVCNEAVKLARKRGFSSLTGFVNGVLRSLARD 135


>gi|70726699|ref|YP_253613.1| hypothetical protein SH1698 [Staphylococcus haemolyticus JCSC1435]
 gi|68447423|dbj|BAE05007.1| unnamed protein product [Staphylococcus haemolyticus JCSC1435]
          Length = 435

 Score = 78.2 bits (192), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 29/141 (20%), Positives = 51/141 (36%), Gaps = 22/141 (15%)

Query: 20  RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79
           R  A Q          +  EI ++Y  Y      E+        +D   +  +++G + R
Sbjct: 6   RELAFQ----------TIQEIFNDY-AYSNLRINEVLSTGDVSDIDKPLYTELVYGTVKR 54

Query: 80  KQHIDLLISSCLT---EKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHD 136
           K  +D  +   +    + W        +  +L   + + I    VP   II+E V IA  
Sbjct: 55  KMTLDFYLRPFVKTKIKSW--------VRQLLWMSLYQYIYLDKVPNHAIINEAVNIAKH 106

Query: 137 FFYGDEPKFINAVLDKVSRKE 157
                    +NA+L  + R E
Sbjct: 107 RGGPHNGNVVNAILRTIFRSE 127


>gi|329926565|ref|ZP_08280978.1| ribosomal RNA small subunit methyltransferase B [Paenibacillus sp.
           HGF5]
 gi|328939106|gb|EGG35469.1| ribosomal RNA small subunit methyltransferase B [Paenibacillus sp.
           HGF5]
          Length = 442

 Score = 77.8 bits (191), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 19/101 (18%), Positives = 44/101 (43%), Gaps = 2/101 (1%)

Query: 58  ESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIE 117
           +S     D      +I+G + R   +D  +   + +     +L   + ++LR  + +++ 
Sbjct: 24  KSSLAKSDAGLATELIYGTISRLNTLDYFLDKFVNKG--VRKLQPWVRALLRISLYQIVY 81

Query: 118 CHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEE 158
              +P   ++SE V +A    +      +N VL  + R++E
Sbjct: 82  LDRIPDHAVVSEAVNLAKRRGHQGISGMVNGVLRNILRQKE 122


>gi|297617049|ref|YP_003702208.1| sun protein [Syntrophothermus lipocalidus DSM 12680]
 gi|297144886|gb|ADI01643.1| sun protein [Syntrophothermus lipocalidus DSM 12680]
          Length = 460

 Score = 77.8 bits (191), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 29/137 (21%), Positives = 55/137 (40%), Gaps = 13/137 (9%)

Query: 20  RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79
           R  A+  LY+++  G                 D ELD               +++G +  
Sbjct: 12  REVALNLLYRVEHKGAYA----------NLAVDRELDRYEDN-GSQHALVTELVNGTVRM 60

Query: 80  KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139
           ++H+D +++  L++     + +  L  ILR  V +L+   +VP   +++E V +A     
Sbjct: 61  RKHLDWVLNLFLSK--PIQKQNPWLREILRMSVYQLLFMDNVPEYAVVNEAVGLAGRKLD 118

Query: 140 GDEPKFINAVLDKVSRK 156
                 +N VL  V R 
Sbjct: 119 RGLSAVVNGVLRNVIRN 135


>gi|124024721|ref|YP_001013837.1| transcription antitermination protein NusB [Prochlorococcus marinus
           str. NATL1A]
 gi|123959789|gb|ABM74572.1| Antitermination protein NusB [Prochlorococcus marinus str. NATL1A]
          Length = 208

 Score = 77.8 bits (191), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 29/125 (23%), Positives = 55/125 (44%), Gaps = 6/125 (4%)

Query: 33  IGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVI----IHGVMDRKQHIDLLIS 88
                   + + E    C    +++  +   VD +  R +    +  V++++  ID  + 
Sbjct: 76  SQNHLKTCLIDSENILNCLSESIELPRLLALVDQKEIRELAVRRVDLVIEKQDEIDHTLD 135

Query: 89  SCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINA 148
           S + E W   RL  I   ILR   ++LI+  + P+ V  +E V +A+ +      + IN 
Sbjct: 136 SVM-EGWRLKRLPRIDRDILRLAWVDLIDF-NTPMAVTCNEAVNLANRYSDVQGRRMING 193

Query: 149 VLDKV 153
           VL K+
Sbjct: 194 VLRKL 198


>gi|228954142|ref|ZP_04116170.1| Ribosomal RNA small subunit methyltransferase B [Bacillus
           thuringiensis serovar kurstaki str. T03a001]
 gi|229071363|ref|ZP_04204586.1| Ribosomal RNA small subunit methyltransferase B [Bacillus cereus
           F65185]
 gi|229081120|ref|ZP_04213630.1| Ribosomal RNA small subunit methyltransferase B [Bacillus cereus
           Rock4-2]
 gi|228702164|gb|EEL54640.1| Ribosomal RNA small subunit methyltransferase B [Bacillus cereus
           Rock4-2]
 gi|228711817|gb|EEL63769.1| Ribosomal RNA small subunit methyltransferase B [Bacillus cereus
           F65185]
 gi|228805462|gb|EEM52053.1| Ribosomal RNA small subunit methyltransferase B [Bacillus
           thuringiensis serovar kurstaki str. T03a001]
          Length = 429

 Score = 77.8 bits (191), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 23/104 (22%), Positives = 43/104 (41%), Gaps = 5/104 (4%)

Query: 53  TELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGV 112
             L  +S     D+     I++G + R+  +D  +   L +K     ++  +  +LR  +
Sbjct: 13  NNLIEKSAIDRKDIGLLTEIVYGTIQRRDTLDYYLQPFLKKK-----VEAWVRVLLRLSL 67

Query: 113 LELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRK 156
            ++I    VP    I E V IA    +      +N VL  + R+
Sbjct: 68  YQMIYLDRVPERAAIHEAVEIAKRRGHKGIAGMVNGVLRSIQRE 111


>gi|291522862|emb|CBK81155.1| ribosomal RNA small subunit methyltransferase RsmB [Coprococcus
           catus GD/7]
          Length = 455

 Score = 77.8 bits (191), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 21/134 (15%), Positives = 49/134 (36%), Gaps = 8/134 (5%)

Query: 26  ALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDL 85
            +Y + +       +  E           L         D  +   +  G ++ +  +D 
Sbjct: 10  IVYDMLMS------VEKENTPSHLLLSQTLMKYQYLDKRDRAFISRLFRGTLEYEIFLDG 63

Query: 86  LISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKF 145
           +I    +     +++   + +ILR  V ++++   +P      E V +       +   F
Sbjct: 64  VIRQFSSV--RLNKIKTPIKAILRMSVYQILKMDHIPDAAACDEAVKLTRKRGLKNLSGF 121

Query: 146 INAVLDKVSRKEEI 159
           +N VL  +SR +E+
Sbjct: 122 VNGVLRNISRNKEV 135


>gi|261405800|ref|YP_003242041.1| sun protein [Paenibacillus sp. Y412MC10]
 gi|261282263|gb|ACX64234.1| sun protein [Paenibacillus sp. Y412MC10]
          Length = 442

 Score = 77.8 bits (191), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 19/101 (18%), Positives = 44/101 (43%), Gaps = 2/101 (1%)

Query: 58  ESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIE 117
           +S     D      +I+G + R   +D  +   + +     +L   + ++LR  + +++ 
Sbjct: 24  KSSLAKSDAGLATELIYGTISRLNTLDYFLDKFVNKG--VRKLQPWVRALLRISLYQIVY 81

Query: 118 CHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEE 158
              +P   ++SE V +A    +      +N VL  + R++E
Sbjct: 82  LDRIPDHAVVSEAVNLAKRRGHQGISGMVNGVLRNILRQKE 122


>gi|229111336|ref|ZP_04240889.1| Ribosomal RNA small subunit methyltransferase B [Bacillus cereus
           Rock1-15]
 gi|228672112|gb|EEL27403.1| Ribosomal RNA small subunit methyltransferase B [Bacillus cereus
           Rock1-15]
          Length = 429

 Score = 77.8 bits (191), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 23/104 (22%), Positives = 43/104 (41%), Gaps = 5/104 (4%)

Query: 53  TELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGV 112
             L  +S     D+     I++G + R+  +D  +   L +K     ++  +  +LR  +
Sbjct: 13  NNLIEKSAIDRKDIGLLTEIVYGTIQRRDTLDYYLQPFLKKK-----VEAWVRVLLRLSL 67

Query: 113 LELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRK 156
            ++I    VP    I E V IA    +      +N VL  + R+
Sbjct: 68  YQMIYLDRVPERAAIHEAVEIAKRRGHKGIAGMVNGVLRSIQRE 111


>gi|229129141|ref|ZP_04258114.1| Ribosomal RNA small subunit methyltransferase B [Bacillus cereus
           BDRD-Cer4]
 gi|228654378|gb|EEL10243.1| Ribosomal RNA small subunit methyltransferase B [Bacillus cereus
           BDRD-Cer4]
          Length = 429

 Score = 77.8 bits (191), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 23/104 (22%), Positives = 43/104 (41%), Gaps = 5/104 (4%)

Query: 53  TELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGV 112
             L  +S     D+     I++G + R+  +D  +   L +K     ++  +  +LR  +
Sbjct: 13  NNLIEKSAIDRKDIGLLTEIVYGTIQRRDTLDYYLQPFLKKK-----VEAWVRVLLRLSL 67

Query: 113 LELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRK 156
            ++I    VP    I E V IA    +      +N VL  + R+
Sbjct: 68  YQMIYLDRVPERAAIHEAVEIAKRRGHKGIAGMVNGVLRSIQRE 111


>gi|87301561|ref|ZP_01084401.1| transcription antitermination protein NusB [Synechococcus sp. WH
           5701]
 gi|87283778|gb|EAQ75732.1| transcription antitermination protein NusB [Synechococcus sp. WH
           5701]
          Length = 204

 Score = 77.8 bits (191), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 19/80 (23%), Positives = 35/80 (43%), Gaps = 2/80 (2%)

Query: 74  HGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCI 133
             V+  +  +D  + + + E W   RL  I   ILR   ++L      P  V  +E V +
Sbjct: 122 RAVLQDRDALDSRLDAVM-EGWRLGRLPRIDRDILRLAAVDL-HTFGTPAPVACNEAVEL 179

Query: 134 AHDFFYGDEPKFINAVLDKV 153
           A+ +      + IN +L ++
Sbjct: 180 ANRYSDDQGRRMINGILRRL 199


>gi|228960081|ref|ZP_04121745.1| Ribosomal RNA small subunit methyltransferase B [Bacillus
           thuringiensis serovar pakistani str. T13001]
 gi|229047552|ref|ZP_04193142.1| Ribosomal RNA small subunit methyltransferase B [Bacillus cereus
           AH676]
 gi|229146436|ref|ZP_04274807.1| Ribosomal RNA small subunit methyltransferase B [Bacillus cereus
           BDRD-ST24]
 gi|229152064|ref|ZP_04280259.1| Ribosomal RNA small subunit methyltransferase B [Bacillus cereus
           m1550]
 gi|229192034|ref|ZP_04319004.1| Ribosomal RNA small subunit methyltransferase B [Bacillus cereus
           ATCC 10876]
 gi|228591585|gb|EEK49434.1| Ribosomal RNA small subunit methyltransferase B [Bacillus cereus
           ATCC 10876]
 gi|228631413|gb|EEK88047.1| Ribosomal RNA small subunit methyltransferase B [Bacillus cereus
           m1550]
 gi|228637069|gb|EEK93528.1| Ribosomal RNA small subunit methyltransferase B [Bacillus cereus
           BDRD-ST24]
 gi|228723799|gb|EEL75154.1| Ribosomal RNA small subunit methyltransferase B [Bacillus cereus
           AH676]
 gi|228799597|gb|EEM46550.1| Ribosomal RNA small subunit methyltransferase B [Bacillus
           thuringiensis serovar pakistani str. T13001]
          Length = 429

 Score = 77.8 bits (191), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 23/104 (22%), Positives = 43/104 (41%), Gaps = 5/104 (4%)

Query: 53  TELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGV 112
             L  +S     D+     I++G + R+  +D  +   L +K     ++  +  +LR  +
Sbjct: 13  NNLIEKSAIDRKDIGLLTEIVYGTIQRRDTLDYYLQPFLKKK-----VEAWVRVLLRLSL 67

Query: 113 LELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRK 156
            ++I    VP    I E V IA    +      +N VL  + R+
Sbjct: 68  YQMIYLDRVPERAAIHEAVEIAKRRGHKGIAGMVNGVLRSIQRE 111


>gi|228940953|ref|ZP_04103512.1| Ribosomal RNA small subunit methyltransferase B [Bacillus
           thuringiensis serovar berliner ATCC 10792]
 gi|228973882|ref|ZP_04134458.1| Ribosomal RNA small subunit methyltransferase B [Bacillus
           thuringiensis serovar thuringiensis str. T01001]
 gi|228980472|ref|ZP_04140782.1| Ribosomal RNA small subunit methyltransferase B [Bacillus
           thuringiensis Bt407]
 gi|228779292|gb|EEM27549.1| Ribosomal RNA small subunit methyltransferase B [Bacillus
           thuringiensis Bt407]
 gi|228785907|gb|EEM33910.1| Ribosomal RNA small subunit methyltransferase B [Bacillus
           thuringiensis serovar thuringiensis str. T01001]
 gi|228818789|gb|EEM64855.1| Ribosomal RNA small subunit methyltransferase B [Bacillus
           thuringiensis serovar berliner ATCC 10792]
          Length = 429

 Score = 77.8 bits (191), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 23/104 (22%), Positives = 43/104 (41%), Gaps = 5/104 (4%)

Query: 53  TELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGV 112
             L  +S     D+     I++G + R+  +D  +   L +K     ++  +  +LR  +
Sbjct: 13  NNLIEKSAIDRKDIGLLTEIVYGTIQRRDTLDYYLQPFLKKK-----VEAWVRVLLRLSL 67

Query: 113 LELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRK 156
            ++I    VP    I E V IA    +      +N VL  + R+
Sbjct: 68  YQMIYLDRVPERAAIHEAVEIAKRRGHKGIAGMVNGVLRSIQRE 111


>gi|228966815|ref|ZP_04127859.1| Ribosomal RNA small subunit methyltransferase B [Bacillus
           thuringiensis serovar sotto str. T04001]
 gi|228792914|gb|EEM40472.1| Ribosomal RNA small subunit methyltransferase B [Bacillus
           thuringiensis serovar sotto str. T04001]
          Length = 429

 Score = 77.8 bits (191), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 23/104 (22%), Positives = 43/104 (41%), Gaps = 5/104 (4%)

Query: 53  TELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGV 112
             L  +S     D+     I++G + R+  +D  +   L +K     ++  +  +LR  +
Sbjct: 13  NNLIEKSAIDRKDIGLLTEIVYGTIQRRDTLDYYLQPFLKKK-----VEAWVRVLLRLSL 67

Query: 113 LELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRK 156
            ++I    VP    I E V IA    +      +N VL  + R+
Sbjct: 68  YQMIYLDRVPERAAIHEAVEIAKRRGHKGIAGMVNGVLRSIQRE 111


>gi|229180141|ref|ZP_04307485.1| Ribosomal RNA small subunit methyltransferase B [Bacillus cereus
           172560W]
 gi|228603350|gb|EEK60827.1| Ribosomal RNA small subunit methyltransferase B [Bacillus cereus
           172560W]
          Length = 429

 Score = 77.8 bits (191), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 23/104 (22%), Positives = 43/104 (41%), Gaps = 5/104 (4%)

Query: 53  TELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGV 112
             L  +S     D+     I++G + R+  +D  +   L +K     ++  +  +LR  +
Sbjct: 13  NNLIEKSTIDRKDIGLLTEIVYGTIQRRDTLDYYLQPFLKKK-----VEAWVRVLLRLSL 67

Query: 113 LELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRK 156
            ++I    VP    I E V IA    +      +N VL  + R+
Sbjct: 68  YQMIYLDRVPERAAIHEAVEIAKRRGHKGIAGMVNGVLRSIQRE 111


>gi|228909690|ref|ZP_04073513.1| Ribosomal RNA small subunit methyltransferase B [Bacillus
           thuringiensis IBL 200]
 gi|228849979|gb|EEM94810.1| Ribosomal RNA small subunit methyltransferase B [Bacillus
           thuringiensis IBL 200]
          Length = 429

 Score = 77.8 bits (191), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 23/104 (22%), Positives = 43/104 (41%), Gaps = 5/104 (4%)

Query: 53  TELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGV 112
             L  +S     D+     I++G + R+  +D  +   L +K     ++  +  +LR  +
Sbjct: 13  NNLIEKSAIDRKDIGLLTEIVYGTIQRRDTLDYYLQPFLKKK-----VEAWVRVLLRLSL 67

Query: 113 LELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRK 156
            ++I    VP    I E V IA    +      +N VL  + R+
Sbjct: 68  YQMIYLDRVPERAAIHEAVEIAKRRGHKGIAGMVNGVLRSIQRE 111


>gi|223043738|ref|ZP_03613781.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
           capitis SK14]
 gi|222442835|gb|EEE48937.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
           capitis SK14]
          Length = 435

 Score = 77.8 bits (191), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 23/115 (20%), Positives = 44/115 (38%), Gaps = 11/115 (9%)

Query: 46  TYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLT---EKWSFSRLDM 102
            Y      E+   ++   VD   F  +++G + RK  +D ++   +    + W       
Sbjct: 21  AYSNLKINEVLSSNIIADVDRNLFTELVYGTIKRKYTLDYILKPFVKTKIKGW------- 73

Query: 103 ILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKE 157
            +  +L   + + +    VP   II+E V IA           +N +L  + R E
Sbjct: 74  -VRQLLWMSIYQYVYLDKVPDHAIINEAVDIAKQRGGHHNGNIVNGILRSMMRSE 127


>gi|312111726|ref|YP_003990042.1| sun protein [Geobacillus sp. Y4.1MC1]
 gi|311216827|gb|ADP75431.1| sun protein [Geobacillus sp. Y4.1MC1]
          Length = 447

 Score = 77.8 bits (191), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 24/137 (17%), Positives = 49/137 (35%), Gaps = 14/137 (10%)

Query: 20  RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79
           R  A++ L             + E E Y       +         D+     I++G + R
Sbjct: 7   REVALETL-----------LAVEEKEAYSNLLLNNMIETHRLSERDVRLLTEIVYGTIQR 55

Query: 80  KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139
           +  +D  ++  L +     R    +  +LR  + +++    +P    I E V IA    +
Sbjct: 56  RDTLDYYLAPFLKKARKLERW---VRVLLRLTLYQVLYLDRIPDRAAIFEAVEIAKKRGH 112

Query: 140 GDEPKFINAVLDKVSRK 156
                 +N V+  + R+
Sbjct: 113 QGIASLVNGVMRAILRQ 129


>gi|239826566|ref|YP_002949190.1| sun protein [Geobacillus sp. WCH70]
 gi|239806859|gb|ACS23924.1| sun protein [Geobacillus sp. WCH70]
          Length = 447

 Score = 77.8 bits (191), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 24/137 (17%), Positives = 50/137 (36%), Gaps = 14/137 (10%)

Query: 20  RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79
           R  A++ L             + E E Y      ++         D+     I++G + R
Sbjct: 7   REVALETL-----------LAVEEKEAYSNLLLNKMIETHRLSERDVRLLTEIVYGTIQR 55

Query: 80  KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139
           +  +D  ++  L +     R    +  +LR  + +++    +P    I E V IA    +
Sbjct: 56  RDTLDYYLTPFLKKARKLERW---VRVLLRLTLYQVLYLDRIPDRAAIFEAVEIAKKRGH 112

Query: 140 GDEPKFINAVLDKVSRK 156
                 +N V+  + R+
Sbjct: 113 QGVASLVNGVMRAIQRQ 129


>gi|253702184|ref|YP_003023373.1| sun protein [Geobacter sp. M21]
 gi|251777034|gb|ACT19615.1| sun protein [Geobacter sp. M21]
          Length = 448

 Score = 77.8 bits (191), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 33/139 (23%), Positives = 55/139 (39%), Gaps = 14/139 (10%)

Query: 20  RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79
           R AA   L            I  E        D EL  + +    D      +++GV+ R
Sbjct: 7   RRAAFDIL----------LRIEKEKSFADILIDHELSKD-IIKGADRGLLTELVYGVLRR 55

Query: 80  KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139
           +  +D +IS    +     +L++ +  +LR G+ +      VPV   ++E V +A +   
Sbjct: 56  QGTLDYIISQFSKQ--RPEKLELFVRLLLRLGIYQCFFLDRVPVSAAVNETVNLAKEL-A 112

Query: 140 GDEPKFINAVLDKVSRKEE 158
                FINAVL    R  +
Sbjct: 113 PRASGFINAVLRNADRGRD 131


>gi|295399764|ref|ZP_06809745.1| sun protein [Geobacillus thermoglucosidasius C56-YS93]
 gi|294978167|gb|EFG53764.1| sun protein [Geobacillus thermoglucosidasius C56-YS93]
          Length = 447

 Score = 77.4 bits (190), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 24/137 (17%), Positives = 49/137 (35%), Gaps = 14/137 (10%)

Query: 20  RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79
           R  A++ L             + E E Y       +         D+     I++G + R
Sbjct: 7   REVALETL-----------LAVEEKEAYSNLLLNNMIETHRLSERDVRLLTEIVYGTIQR 55

Query: 80  KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139
           +  +D  ++  L +     R    +  +LR  + +++    +P    I E V IA    +
Sbjct: 56  RDTLDYYLAPFLKKARKLERW---VRVLLRLTLYQVLYLDRIPDRAAIFEAVEIAKKRGH 112

Query: 140 GDEPKFINAVLDKVSRK 156
                 +N V+  + R+
Sbjct: 113 QGIASLVNGVMRAILRQ 129


>gi|228902369|ref|ZP_04066525.1| Ribosomal RNA small subunit methyltransferase B [Bacillus
           thuringiensis IBL 4222]
 gi|228857267|gb|EEN01771.1| Ribosomal RNA small subunit methyltransferase B [Bacillus
           thuringiensis IBL 4222]
          Length = 429

 Score = 77.4 bits (190), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 23/104 (22%), Positives = 43/104 (41%), Gaps = 5/104 (4%)

Query: 53  TELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGV 112
             L  +S     D+     I++G + R+  +D  +   L +K     ++  +  +LR  +
Sbjct: 13  NNLIEKSAIDRKDIGLLTEIVYGTIQRRDTLDYYLQPFLKKK-----VEAWVRVLLRLSL 67

Query: 113 LELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRK 156
            ++I    VP    I E V IA    +      +N VL  + R+
Sbjct: 68  YQMIYLDRVPERAAIHEAVEIAKRRGHKGIAGMVNGVLRSIQRE 111


>gi|225847985|ref|YP_002728148.1| transcription antitermination factor NusB [Sulfurihydrogenibium
           azorense Az-Fu1]
 gi|225644070|gb|ACN99120.1| transcription antitermination factor NusB [Sulfurihydrogenibium
           azorense Az-Fu1]
          Length = 159

 Score = 77.4 bits (190), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 33/156 (21%), Positives = 67/156 (42%), Gaps = 21/156 (13%)

Query: 10  LKLSHR--RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLE 67
           +K S +  +  AR   ++  Y  D  G    +I+ EY   +  +   ++           
Sbjct: 1   MKQSIKNIQRQARELLLKVFYTFDQKGEPLEDILKEYTNLKEISPEVIN----------- 49

Query: 68  WFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVP----- 122
           + + II    ++K  +D +I S L EKW F RL  I  ++L+  + + ++          
Sbjct: 50  YAKEIISFFNEKKDKVDEMIKSHL-EKWRFERLGYIEKALLKIAITDFLKLKEKGREENF 108

Query: 123 -VEVIISEYVCIAHDF-FYGDEPKFINAVLDKVSRK 156
            ++ II + + +   +       KF+N +L +V R+
Sbjct: 109 MIKRIILDTLDLVECYTGSKKSVKFVNGILGRVVRE 144


>gi|331091584|ref|ZP_08340420.1| ribosomal RNA small subunit methyltransferase B [Lachnospiraceae
           bacterium 2_1_46FAA]
 gi|330403611|gb|EGG83167.1| ribosomal RNA small subunit methyltransferase B [Lachnospiraceae
           bacterium 2_1_46FAA]
          Length = 449

 Score = 77.4 bits (190), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 25/120 (20%), Positives = 48/120 (40%), Gaps = 6/120 (5%)

Query: 39  EIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFS 98
           EI  E           L+        +  +   ++ G ++    ID +I+     K   +
Sbjct: 17  EITKEGGYSHIVLRNTLEKYQYLDKKERAFITRVVEGTLEHLIEIDYIINQF--SKVKVN 74

Query: 99  RLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA--HDFFYGDEPKFINAVLDKVSRK 156
           ++  ++ +I+R  V ++    SVP   + +E V +A    FF      F+N VL  + R 
Sbjct: 75  KMKPVIRTIIRNSVYQIKYMDSVPNSAVCNEAVKLAEKKGFFQLK--GFVNGVLRNIDRN 132


>gi|73666920|ref|YP_302936.1| hypothetical protein Ecaj_0291 [Ehrlichia canis str. Jake]
 gi|72394061|gb|AAZ68338.1| hypothetical protein Ecaj_0291 [Ehrlichia canis str. Jake]
          Length = 148

 Score = 77.4 bits (190), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 33/101 (32%), Positives = 55/101 (54%), Gaps = 1/101 (0%)

Query: 53  TELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGV 112
            E+      + +D +    I++ ++     I+  I++ L EKWS  R+++I  SI++  V
Sbjct: 19  YEMKEVLDLIQIDNQLLIKIMNTMLLTFNTINSTIATFLNEKWSIDRINLISLSIIKTAV 78

Query: 113 LELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKV 153
            ELI C +    +II+EYV IA       E  FINA+L++V
Sbjct: 79  CELI-CSNTDAVIIINEYVNIASHILEKTEVNFINAILNQV 118


>gi|302671346|ref|YP_003831306.1| rRNA small subunit methyltransferase B Sun [Butyrivibrio
           proteoclasticus B316]
 gi|302395819|gb|ADL34724.1| rRNA small subunit methyltransferase B Sun [Butyrivibrio
           proteoclasticus B316]
          Length = 450

 Score = 77.4 bits (190), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 30/141 (21%), Positives = 55/141 (39%), Gaps = 16/141 (11%)

Query: 20  RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79
           R   +  L + D  G     ++ +        DT           D  + + +  G ++R
Sbjct: 5   REIILNILIEYDRDGNRKPSLLKDTLEKYDYLDT----------RDKSFIKRVTEGCLER 54

Query: 80  KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA--HDF 137
              ID +I S    K    ++   + +++R    +++   SVP     +E V +A  H F
Sbjct: 55  NIQIDYIIDSY--AKTPVRQMQPFIRALMRMSTYQIMFMDSVPDSAACNEAVKLAAKHKF 112

Query: 138 FYGDEPKFINAVLDKVSRKEE 158
                  F+N VL  VSR ++
Sbjct: 113 AGLK--GFVNGVLRNVSRGKD 131


>gi|256383931|gb|ACU78501.1| transcription antitermination factor NusB [Mycoplasma mycoides
           subsp. capri str. GM12]
 gi|256384763|gb|ACU79332.1| transcription antitermination factor NusB [Mycoplasma mycoides
           subsp. capri str. GM12]
 gi|296455225|gb|ADH21460.1| transcription antitermination factor NusB [synthetic Mycoplasma
           mycoides JCVI-syn1.0]
          Length = 132

 Score = 77.4 bits (190), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 29/136 (21%), Positives = 58/136 (42%), Gaps = 14/136 (10%)

Query: 20  RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79
           R   +Q  Y+  ++  S   I  +           LD      + D+ +    I  +  +
Sbjct: 11  RKLLIQTFYKYQLLNASIDYIHQDI----------LDDVQNINNKDVLFE---IEQIAKK 57

Query: 80  KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139
           +  +   I+  ++  W + R+  ++ +IL  G  E++   + P  V I+E V    +   
Sbjct: 58  QTDLINHININVSSSWKWDRIPAVIRAILIVGTYEILYT-NTPKPVTINEMVKYVKEIEP 116

Query: 140 GDEPKFINAVLDKVSR 155
             + KF+NAVLDK+ +
Sbjct: 117 DFDYKFVNAVLDKLVK 132


>gi|302872122|ref|YP_003840758.1| sun protein [Caldicellulosiruptor obsidiansis OB47]
 gi|302574981|gb|ADL42772.1| sun protein [Caldicellulosiruptor obsidiansis OB47]
          Length = 423

 Score = 77.4 bits (190), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 24/105 (22%), Positives = 42/105 (40%), Gaps = 5/105 (4%)

Query: 54  ELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVL 113
           E   + +    D   F  ++HGV+  K  ID  I+    +     R+     +ILR    
Sbjct: 19  EKFHQKLKNEKDRALFVELVHGVLRYKNLIDYYINFVTKKGVKDKRI----LNILRVATY 74

Query: 114 ELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEE 158
           EL+    +P    ++E   +A          F+NA+L  + R + 
Sbjct: 75  ELLFLEKIPEYATVNEACEVASKIS-PHLKAFVNAILRNIIRNKN 118


>gi|164687800|ref|ZP_02211828.1| hypothetical protein CLOBAR_01444 [Clostridium bartlettii DSM
           16795]
 gi|164603075|gb|EDQ96540.1| hypothetical protein CLOBAR_01444 [Clostridium bartlettii DSM
           16795]
          Length = 441

 Score = 77.4 bits (190), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 33/141 (23%), Positives = 65/141 (46%), Gaps = 14/141 (9%)

Query: 18  IARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVM 77
            +R  A + L+ I+     +   I+++       D  LD      + D  +   II+GV+
Sbjct: 2   KSRNLAYKVLFDIEKNQNYSNMAINKH-----FKDCNLD------NRDRGFATEIIYGVV 50

Query: 78  DRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDF 137
           + K ++D +I      K   ++L++ +  +LR G+ +++   SV     ++E V +    
Sbjct: 51  ENKIYLDYIIDKL--SKIKSNKLNLKVKILLRMGIYQILFLDSVSDYAAVNETVNLTKKL 108

Query: 138 FYGDEPKFINAVLDKVSRKEE 158
                  F+NAVL  V R++E
Sbjct: 109 -DNRSAGFVNAVLRNVIRQKE 128


>gi|322386005|ref|ZP_08059645.1| RNA methyltransferase Sun [Streptococcus cristatus ATCC 51100]
 gi|321269988|gb|EFX52908.1| RNA methyltransferase Sun [Streptococcus cristatus ATCC 51100]
          Length = 440

 Score = 77.4 bits (190), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 33/160 (20%), Positives = 67/160 (41%), Gaps = 21/160 (13%)

Query: 10  LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF 69
           + L  ++  AR  A++ L           E+  E   Y   A  +   +S     D    
Sbjct: 1   MNLESKQKRARELALEIL----------EEVFEE-GAYSNIALNKALKQSALSSADKSLV 49

Query: 70  RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISE 129
             +++G + RK  ++  ++  + ++    +LD  L  +L   + +++    +P   +++E
Sbjct: 50  TELVYGTVARKISLEWQLAHFVEDR---DKLDAWLYILLELSLYQMLYLDKIPQHAVVNE 106

Query: 130 YVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRSGCVSAIT 169
            V IA     G   K++NA+L K+      +R G    IT
Sbjct: 107 AVEIAKGRKRG-SEKYVNAILRKI------ERDGAADPIT 139


>gi|296331149|ref|ZP_06873623.1| RNA-binding Sun protein [Bacillus subtilis subsp. spizizenii ATCC
           6633]
 gi|305674305|ref|YP_003865977.1| RNA-binding Sun protein; 16S rRNA m5C967 methyltransferase,
           S-adenosyl-L-methionine-dependent [Bacillus subtilis
           subsp. spizizenii str. W23]
 gi|296151793|gb|EFG92668.1| RNA-binding Sun protein [Bacillus subtilis subsp. spizizenii ATCC
           6633]
 gi|305412549|gb|ADM37668.1| RNA-binding Sun protein; 16S rRNA m5C967 methyltransferase,
           S-adenosyl-L-methionine-dependent [Bacillus subtilis
           subsp. spizizenii str. W23]
          Length = 447

 Score = 77.4 bits (190), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 22/142 (15%), Positives = 52/142 (36%), Gaps = 14/142 (9%)

Query: 15  RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74
           ++   R  A++AL +++     +  ++         +D            D      +++
Sbjct: 2   KKNSVRDIALEALIKLEQNQAYSNLLLKSVIKSNELSDQ-----------DRALLTELVY 50

Query: 75  GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134
           G +  K  +D ++   + +          +  +LR  + ++     +P    I E V IA
Sbjct: 51  GTLQNKIALDYMLKPFINKPQKVK---PWVIQLLRLSLYQMEYLEKIPDRAAIHEAVEIA 107

Query: 135 HDFFYGDEPKFINAVLDKVSRK 156
               +     F+N VL  + R+
Sbjct: 108 KIRGHKGIASFVNGVLRSIQRE 129


>gi|47096543|ref|ZP_00234133.1| sun protein [Listeria monocytogenes str. 1/2a F6854]
 gi|254899481|ref|ZP_05259405.1| hypothetical protein LmonJ_06694 [Listeria monocytogenes J0161]
 gi|254912380|ref|ZP_05262392.1| sun protein [Listeria monocytogenes J2818]
 gi|254936707|ref|ZP_05268404.1| sun protein [Listeria monocytogenes F6900]
 gi|47015075|gb|EAL06018.1| sun protein [Listeria monocytogenes str. 1/2a F6854]
 gi|258609304|gb|EEW21912.1| sun protein [Listeria monocytogenes F6900]
 gi|293590362|gb|EFF98696.1| sun protein [Listeria monocytogenes J2818]
          Length = 444

 Score = 77.4 bits (190), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 27/119 (22%), Positives = 48/119 (40%), Gaps = 11/119 (9%)

Query: 41  ISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTE---KWSF 97
           I   ++Y      +   +     +D      +++G   RK  +D  ++  L +    W  
Sbjct: 18  IENNQSYSHLLINDALKKQKLNPLDKGLLTELVYGTTQRKITLDYYLAPFLNKEPDNW-- 75

Query: 98  SRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRK 156
                 + ++LR  V +L     VP   I++E   IA +  +    KF+N VL  V RK
Sbjct: 76  ------VKNLLRMSVYQLTYLDKVPEHAILNEAGDIAKNMGHQGVTKFVNGVLRNVIRK 128


>gi|313637331|gb|EFS02816.1| ribosomal RNA small subunit methyltransferase B [Listeria seeligeri
           FSL S4-171]
          Length = 446

 Score = 77.4 bits (190), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 30/146 (20%), Positives = 55/146 (37%), Gaps = 22/146 (15%)

Query: 14  HRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVII 73
            ++   R  A++ +             I   ++Y      +   +     +D      ++
Sbjct: 2   KKQKTVREIALELI-----------IKIENNQSYSHLLINDALKKQKLNPLDKGLLTELV 50

Query: 74  HGVMDRKQHIDLLISSCLTE---KWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEY 130
           +G   RK  +D  ++  L +    W        + ++LR  V +L     VP   I++E 
Sbjct: 51  YGTTQRKITLDYYLAPFLNKEPDNW--------VKNLLRMSVYQLTFLDKVPEHAILNEA 102

Query: 131 VCIAHDFFYGDEPKFINAVLDKVSRK 156
             IA D  +    KF+N VL  V RK
Sbjct: 103 GDIAKDLGHQGVTKFVNGVLRNVIRK 128


>gi|312134888|ref|YP_004002226.1| sun protein [Caldicellulosiruptor owensensis OL]
 gi|311774939|gb|ADQ04426.1| sun protein [Caldicellulosiruptor owensensis OL]
          Length = 423

 Score = 77.4 bits (190), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 27/110 (24%), Positives = 46/110 (41%), Gaps = 6/110 (5%)

Query: 54  ELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVL 113
           E   + +    D   F  ++HGV+  K  ID  I+    +     R+     +ILR    
Sbjct: 19  EKFHQKLKNEKDRALFVELVHGVLRYKNLIDYYINFVTKKGVKDKRI----LNILRVATY 74

Query: 114 ELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSR-KEEIKRS 162
           EL+    +P    ++E   +A          F+NA+L  + R K +I+ S
Sbjct: 75  ELLFLEKIPEYATVNEACEVASKIS-PHLKAFVNAILRNIIRNKNQIEES 123


>gi|16803862|ref|NP_465347.1| hypothetical protein lmo1822 [Listeria monocytogenes EGD-e]
 gi|224501376|ref|ZP_03669683.1| hypothetical protein LmonFR_02455 [Listeria monocytogenes FSL
           R2-561]
 gi|254829183|ref|ZP_05233870.1| sun protein [Listeria monocytogenes FSL N3-165]
 gi|254831576|ref|ZP_05236231.1| hypothetical protein Lmon1_09493 [Listeria monocytogenes 10403S]
 gi|16411276|emb|CAC99900.1| lmo1822 [Listeria monocytogenes EGD-e]
 gi|258601593|gb|EEW14918.1| sun protein [Listeria monocytogenes FSL N3-165]
          Length = 444

 Score = 77.4 bits (190), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 27/119 (22%), Positives = 48/119 (40%), Gaps = 11/119 (9%)

Query: 41  ISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTE---KWSF 97
           I   ++Y      +   +     +D      +++G   RK  +D  ++  L +    W  
Sbjct: 18  IENNQSYSHLLINDALKKQKLNPLDKGLLTELVYGTTQRKITLDYYLAPFLNKEPDNW-- 75

Query: 98  SRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRK 156
                 + ++LR  V +L     VP   I++E   IA +  +    KF+N VL  V RK
Sbjct: 76  ------VKNLLRMSVYQLTYLDKVPEHAILNEAGDIAKNMGHQGVTKFVNGVLRNVIRK 128


>gi|157412347|ref|YP_001483213.1| transcription antitermination protein NusB [Prochlorococcus marinus
           str. MIT 9215]
 gi|157386922|gb|ABV49627.1| Antitermination protein NusB [Prochlorococcus marinus str. MIT
           9215]
          Length = 208

 Score = 77.4 bits (190), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 21/78 (26%), Positives = 34/78 (43%), Gaps = 2/78 (2%)

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
           +++  + ID  I   +   W   RL  I   ILR      I   + P+ V   E V +A+
Sbjct: 127 IINNLKSIDSDIDQVMD-GWRLKRLPRIDRDILRLA-YVDINFLNTPIAVACDEAVNLAN 184

Query: 136 DFFYGDEPKFINAVLDKV 153
            +      +FIN VL ++
Sbjct: 185 KYSDLQGRRFINGVLRRL 202


>gi|284802268|ref|YP_003414133.1| hypothetical protein LM5578_2024 [Listeria monocytogenes 08-5578]
 gi|284995410|ref|YP_003417178.1| hypothetical protein LM5923_1975 [Listeria monocytogenes 08-5923]
 gi|284057830|gb|ADB68771.1| hypothetical protein LM5578_2024 [Listeria monocytogenes 08-5578]
 gi|284060877|gb|ADB71816.1| hypothetical protein LM5923_1975 [Listeria monocytogenes 08-5923]
          Length = 444

 Score = 77.4 bits (190), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 27/119 (22%), Positives = 48/119 (40%), Gaps = 11/119 (9%)

Query: 41  ISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTE---KWSF 97
           I   ++Y      +   +     +D      +++G   RK  +D  ++  L +    W  
Sbjct: 18  IENNQSYSHLLINDALKKQKLNPLDKGLLTELVYGTTQRKITLDYYLAPFLNKEPDNW-- 75

Query: 98  SRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRK 156
                 + ++LR  V +L     VP   I++E   IA +  +    KF+N VL  V RK
Sbjct: 76  ------VKNLLRMSVYQLTYLDKVPEHAILNEAGDIAKNMGHQGVTKFVNGVLRNVIRK 128


>gi|116873257|ref|YP_850038.1| sun protein [Listeria welshimeri serovar 6b str. SLCC5334]
 gi|116742135|emb|CAK21259.1| sun protein [Listeria welshimeri serovar 6b str. SLCC5334]
          Length = 444

 Score = 77.4 bits (190), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 28/119 (23%), Positives = 48/119 (40%), Gaps = 11/119 (9%)

Query: 41  ISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTE---KWSF 97
           I   ++Y      +   +     +D      +++G   RK  +D  ++  L +    W  
Sbjct: 18  IENNQSYSHLLINDALKKQKLNPLDKGLLTELVYGTTQRKITLDYYLAPFLNKEPDNW-- 75

Query: 98  SRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRK 156
                 + ++LR  V +L     VP   I++E   IA D  +    KF+N VL  V RK
Sbjct: 76  ------VKNLLRMSVYQLTFLDKVPEHAILNEAGDIAKDLGHQGVTKFVNGVLRNVIRK 128


>gi|229086418|ref|ZP_04218594.1| Ribosomal RNA small subunit methyltransferase B [Bacillus cereus
           Rock3-44]
 gi|228696934|gb|EEL49743.1| Ribosomal RNA small subunit methyltransferase B [Bacillus cereus
           Rock3-44]
          Length = 431

 Score = 77.4 bits (190), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 23/104 (22%), Positives = 44/104 (42%), Gaps = 5/104 (4%)

Query: 53  TELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGV 112
             L  +S     D+     I++G + R+  +D  +   L +K     ++  +  +LR  +
Sbjct: 15  NNLIEKSEIDRKDIGLLTEIVYGTIQRRDTLDYYLQPFLKKK-----VEAWVKVLLRLSL 69

Query: 113 LELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRK 156
            ++I    VP   +I E V IA    +      +N VL  + R+
Sbjct: 70  YQMIYLDRVPERAVIHEAVEIAKRRGHKGIAGMVNGVLRSIQRE 113


>gi|254526109|ref|ZP_05138161.1| antitermination protein NusB [Prochlorococcus marinus str. MIT
           9202]
 gi|221537533|gb|EEE39986.1| antitermination protein NusB [Prochlorococcus marinus str. MIT
           9202]
          Length = 208

 Score = 77.4 bits (190), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 21/78 (26%), Positives = 34/78 (43%), Gaps = 2/78 (2%)

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
           +++  + ID  I   +   W   RL  I   ILR      I   + P+ V   E V +A+
Sbjct: 127 IINNLKSIDSDIDQVMD-GWRLKRLPRIDRDILRLA-YVDINFLNTPIAVACDEAVNLAN 184

Query: 136 DFFYGDEPKFINAVLDKV 153
            +      +FIN VL ++
Sbjct: 185 KYSDLQGRRFINGVLRRL 202


>gi|312793229|ref|YP_004026152.1| sun protein [Caldicellulosiruptor kristjanssonii 177R1B]
 gi|312180369|gb|ADQ40539.1| sun protein [Caldicellulosiruptor kristjanssonii 177R1B]
          Length = 410

 Score = 77.1 bits (189), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 28/110 (25%), Positives = 46/110 (41%), Gaps = 6/110 (5%)

Query: 54  ELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVL 113
           E   + +    D   F  ++HGV+  K  ID  I+    +     R+     +ILR    
Sbjct: 6   EKFHQKLKNEKDRALFVELVHGVLRYKNLIDYYINFVAKKGVKDRRI----LNILRVATY 61

Query: 114 ELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSR-KEEIKRS 162
           EL+    +P    ++E   IA          F+NA+L  + R K +I+ S
Sbjct: 62  ELLFLEKIPEYATVNEACEIASKIS-PHLKAFVNAILRNIIRNKNQIEES 110


>gi|138894694|ref|YP_001125147.1| 16S rRNA m(5)C 967 methyltransferase [Geobacillus
           thermodenitrificans NG80-2]
 gi|196247686|ref|ZP_03146388.1| sun protein [Geobacillus sp. G11MC16]
 gi|134266207|gb|ABO66402.1| 16S rRNA m(5)C 967 methyltransferase [Geobacillus
           thermodenitrificans NG80-2]
 gi|196212470|gb|EDY07227.1| sun protein [Geobacillus sp. G11MC16]
          Length = 444

 Score = 77.1 bits (189), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 27/137 (19%), Positives = 49/137 (35%), Gaps = 14/137 (10%)

Query: 20  RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79
           R  A+  L  I+  G            Y          +      D      I++G + R
Sbjct: 4   RELALDTLLAIEQKG-----------AYSHLQLNNAIQKGRLDGRDAALLTEIVYGTIQR 52

Query: 80  KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139
           +  +D  ++  L +     RL+  +  +LR  + +++    VP    I E V IA    +
Sbjct: 53  RDTLDYYLTPFLRKA---RRLEQWVRVLLRLTLYQMVYLDRVPDHAAIFEAVEIAKRRGH 109

Query: 140 GDEPKFINAVLDKVSRK 156
                 +N VL  + R+
Sbjct: 110 RGIASLVNGVLRTIGRE 126


>gi|72383173|ref|YP_292528.1| transcription antitermination protein NusB [Prochlorococcus marinus
           str. NATL2A]
 gi|72003023|gb|AAZ58825.1| antitermination protein NusB [Prochlorococcus marinus str. NATL2A]
          Length = 208

 Score = 77.1 bits (189), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 29/125 (23%), Positives = 55/125 (44%), Gaps = 6/125 (4%)

Query: 33  IGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVI----IHGVMDRKQHIDLLIS 88
                   + + E    C    +++  +   VD +  R +    +  V++++  ID  + 
Sbjct: 76  SQNHLKTCLIDSENILNCLSESIELPRLLALVDQKEIRELALRRVDLVIEKQDEIDHKLD 135

Query: 89  SCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINA 148
           S + E W   RL  I   ILR   ++LI+  + P+ V  +E V +A+ +      + IN 
Sbjct: 136 SVM-EGWRLKRLPRIDSDILRLAWVDLIDF-NTPMAVTCNEAVNLANRYSDEQGRRMING 193

Query: 149 VLDKV 153
           VL K+
Sbjct: 194 VLRKL 198


>gi|226224425|ref|YP_002758532.1| RNA-binding Sun protein [Listeria monocytogenes Clip81459]
 gi|225876887|emb|CAS05596.1| Putative RNA-binding Sun protein [Listeria monocytogenes serotype
           4b str. CLIP 80459]
          Length = 444

 Score = 77.1 bits (189), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 28/119 (23%), Positives = 48/119 (40%), Gaps = 11/119 (9%)

Query: 41  ISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTE---KWSF 97
           I   ++Y      +   +     +D      +++G   RK  +D  ++  L +    W  
Sbjct: 18  IENNQSYSHLLINDALKKQKLNPLDKGLLTELVYGTTQRKITLDYYLAPFLNKEPDNW-- 75

Query: 98  SRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRK 156
                 + ++LR  V +L     VP   I++E   IA D  +    KF+N VL  V RK
Sbjct: 76  ------VKNLLRMSVYQLTFLDKVPEHAILNEAGDIAKDLGHQGVTKFVNGVLRNVIRK 128


>gi|255522012|ref|ZP_05389249.1| sun protein [Listeria monocytogenes FSL J1-175]
          Length = 444

 Score = 77.1 bits (189), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 28/119 (23%), Positives = 48/119 (40%), Gaps = 11/119 (9%)

Query: 41  ISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTE---KWSF 97
           I   ++Y      +   +     +D      +++G   RK  +D  ++  L +    W  
Sbjct: 18  IENNQSYSHLLINDALKKQKLNPLDKGLLTELVYGTTQRKITLDYYLAPFLNKEPDNW-- 75

Query: 98  SRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRK 156
                 + ++LR  V +L     VP   I++E   IA D  +    KF+N VL  V RK
Sbjct: 76  ------VKNLLRMSVYQLTFLDKVPEHAILNEAGDIAKDLGHQGVTKFVNGVLRNVIRK 128


>gi|291450278|ref|ZP_06589668.1| RNA-binding Sun protein [Streptomyces albus J1074]
 gi|291353227|gb|EFE80129.1| RNA-binding Sun protein [Streptomyces albus J1074]
          Length = 338

 Score = 77.1 bits (189), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 29/158 (18%), Positives = 59/158 (37%), Gaps = 13/158 (8%)

Query: 1   MTIQDNKKDLKL-----SHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTEL 55
           MT Q +++  K        ++   R+ A +AL           +  +             
Sbjct: 1   MTDQPSRRPRKTGKPYRRPKKDPVRILAFEAL-----RAVDERDAYANLVLPALLRKARE 55

Query: 56  DVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLEL 115
           D    +   D      +++G + R+   D +I++C+        +D  +  +L  G  +L
Sbjct: 56  DHPDTFEARDAALATELVYGTLRRQGTYDAIIAACVDR--PLREVDPPVLDVLSLGAHQL 113

Query: 116 IECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKV 153
           +    +P    +S  V +A         KF+NAVL ++
Sbjct: 114 LGTR-IPSHAAVSATVELARVVLGDGRAKFVNAVLRRI 150


>gi|253682518|ref|ZP_04863315.1| ribosomal RNA small subunit methyltransferase B [Clostridium
           botulinum D str. 1873]
 gi|253562230|gb|EES91682.1| ribosomal RNA small subunit methyltransferase B [Clostridium
           botulinum D str. 1873]
          Length = 443

 Score = 77.1 bits (189), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 22/96 (22%), Positives = 41/96 (42%), Gaps = 2/96 (2%)

Query: 63  HVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVP 122
             D      I++G +  K  ID ++++ L +      +D  + +ILR  + ++     +P
Sbjct: 37  EKDKGLITEIVYGTIKYKYTIDAILNTYLKKG--TKSVDSYILNILRITIYQIKYLDKIP 94

Query: 123 VEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEE 158
               ++E V IA       E K +N VL    R  +
Sbjct: 95  NFAAVNEAVNIAKKHKSIRESKLVNGVLRNYLRNLD 130


>gi|328881116|emb|CCA54355.1| Ribosomal RNA small subunit methyltransferase B [Streptomyces
           venezuelae ATCC 10712]
          Length = 470

 Score = 77.1 bits (189), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 32/159 (20%), Positives = 65/159 (40%), Gaps = 12/159 (7%)

Query: 1   MTIQDNKKDLKLSHR--RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVE 58
           M+ Q  ++  K   R  +   R+ A +AL  +D        ++            +   +
Sbjct: 1   MSEQARRRPHKPYRRPQKDPVRMLAFEALRAVDERDAYANLVLPPLLR-------KAREK 53

Query: 59  SVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIEC 118
             +   D      +++G + R+   D +IS+C+        +D  +  +L  G  +L+  
Sbjct: 54  GDFDGRDAALATELVYGTLRRQGTYDAIISACVDR--PLREVDPPVLDVLALGAHQLLGT 111

Query: 119 HSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKE 157
             +P    +S  V +A         KF+NAVL K+S+++
Sbjct: 112 R-IPTHAAVSASVELARVVLGDGRAKFVNAVLRKISQQD 149


>gi|46908054|ref|YP_014443.1| sun protein [Listeria monocytogenes serotype 4b str. F2365]
 gi|47093059|ref|ZP_00230837.1| sun protein [Listeria monocytogenes str. 4b H7858]
 gi|254826136|ref|ZP_05231137.1| sun protein [Listeria monocytogenes FSL J1-194]
 gi|254852729|ref|ZP_05242077.1| sun protein [Listeria monocytogenes FSL R2-503]
 gi|254933294|ref|ZP_05266653.1| sun protein [Listeria monocytogenes HPB2262]
 gi|300763865|ref|ZP_07073862.1| sun protein [Listeria monocytogenes FSL N1-017]
 gi|46881324|gb|AAT04620.1| sun protein [Listeria monocytogenes serotype 4b str. F2365]
 gi|47018560|gb|EAL09315.1| sun protein [Listeria monocytogenes str. 4b H7858]
 gi|258606052|gb|EEW18660.1| sun protein [Listeria monocytogenes FSL R2-503]
 gi|293584854|gb|EFF96886.1| sun protein [Listeria monocytogenes HPB2262]
 gi|293595376|gb|EFG03137.1| sun protein [Listeria monocytogenes FSL J1-194]
 gi|300515601|gb|EFK42651.1| sun protein [Listeria monocytogenes FSL N1-017]
 gi|332312263|gb|EGJ25358.1| Ribosomal RNA small subunit methyltransferase B [Listeria
           monocytogenes str. Scott A]
          Length = 444

 Score = 77.1 bits (189), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 28/119 (23%), Positives = 48/119 (40%), Gaps = 11/119 (9%)

Query: 41  ISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTE---KWSF 97
           I   ++Y      +   +     +D      +++G   RK  +D  ++  L +    W  
Sbjct: 18  IENNQSYSHLLINDALKKQKLNPLDKGLLTELVYGTTQRKITLDYYLAPFLNKEPDNW-- 75

Query: 98  SRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRK 156
                 + ++LR  V +L     VP   I++E   IA D  +    KF+N VL  V RK
Sbjct: 76  ------VKNLLRMSVYQLTFLDKVPEHAILNEAGDIAKDLGHQGVTKFVNGVLRNVIRK 128


>gi|315303726|ref|ZP_07874237.1| ribosomal RNA small subunit methyltransferase B [Listeria ivanovii
           FSL F6-596]
 gi|313627903|gb|EFR96525.1| ribosomal RNA small subunit methyltransferase B [Listeria ivanovii
           FSL F6-596]
          Length = 446

 Score = 77.1 bits (189), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 30/146 (20%), Positives = 55/146 (37%), Gaps = 22/146 (15%)

Query: 14  HRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVII 73
            ++   R  A++ +             I   ++Y      +   +     +D      ++
Sbjct: 2   KKQKTVREIALELI-----------IKIENNQSYSHLLINDALKKQKLNPLDKGLLTELV 50

Query: 74  HGVMDRKQHIDLLISSCLTE---KWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEY 130
           +G   RK  +D  ++  L +    W        + ++LR  V +L     VP   I++E 
Sbjct: 51  YGTTQRKITLDYYLAPFLNKEPDNW--------VKNLLRMSVYQLTFLDKVPEHAILNEA 102

Query: 131 VCIAHDFFYGDEPKFINAVLDKVSRK 156
             IA D  +    KF+N VL  V RK
Sbjct: 103 GDIAKDLGHQGVTKFVNGVLRNVIRK 128


>gi|217964025|ref|YP_002349703.1| ribosomal RNA small subunit methyltransferase B [Listeria
           monocytogenes HCC23]
 gi|217333295|gb|ACK39089.1| ribosomal RNA small subunit methyltransferase B [Listeria
           monocytogenes HCC23]
 gi|307571404|emb|CAR84583.1| tRNA and rRNA cytosine-C5-methylase, putative [Listeria
           monocytogenes L99]
          Length = 444

 Score = 77.1 bits (189), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 28/119 (23%), Positives = 48/119 (40%), Gaps = 11/119 (9%)

Query: 41  ISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTE---KWSF 97
           I   ++Y      +   +     +D      +++G   RK  +D  ++  L +    W  
Sbjct: 18  IENNQSYSHLLINDALKKQKLNPLDKGLLTELVYGTTQRKITLDYYLAPFLNKEPDNW-- 75

Query: 98  SRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRK 156
                 + ++LR  V +L     VP   I++E   IA D  +    KF+N VL  V RK
Sbjct: 76  ------VKNLLRMSVYQLTFLDKVPEHAILNEAGDIAKDLGHQGVTKFVNGVLRNVIRK 128


>gi|95928560|ref|ZP_01311307.1| sun protein [Desulfuromonas acetoxidans DSM 684]
 gi|95135350|gb|EAT17002.1| sun protein [Desulfuromonas acetoxidans DSM 684]
          Length = 479

 Score = 77.1 bits (189), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 24/140 (17%), Positives = 48/140 (34%), Gaps = 13/140 (9%)

Query: 19  ARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMD 78
           AR  A   L             + E        D  L+        D      +++GV+ 
Sbjct: 29  ARRIAFDVL-----------TRVDEGGYSDLVLDAALEANPGLDPRDRALATELVYGVLR 77

Query: 79  RKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFF 138
           R+ ++D ++ +   +     +L   +  +LR G+ +L     +P   ++   V +A    
Sbjct: 78  RRGNLDFILKAYSRQ--PLKKLQPKVLRLLRLGIYQLCYLDRIPDRAVVHSMVELARRCG 135

Query: 139 YGDEPKFINAVLDKVSRKEE 158
                  +N VL    R+  
Sbjct: 136 LERVSGLVNGVLRSYLREPN 155


>gi|290893049|ref|ZP_06556038.1| sun protein [Listeria monocytogenes FSL J2-071]
 gi|290557409|gb|EFD90934.1| sun protein [Listeria monocytogenes FSL J2-071]
 gi|313608142|gb|EFR84195.1| ribosomal RNA small subunit methyltransferase B [Listeria
           monocytogenes FSL F2-208]
          Length = 444

 Score = 77.1 bits (189), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 28/119 (23%), Positives = 48/119 (40%), Gaps = 11/119 (9%)

Query: 41  ISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTE---KWSF 97
           I   ++Y      +   +     +D      +++G   RK  +D  ++  L +    W  
Sbjct: 18  IENNQSYSHLLINDALKKQKLNPLDKGLLTELVYGTTQRKITLDYYLAPFLNKEPDNW-- 75

Query: 98  SRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRK 156
                 + ++LR  V +L     VP   I++E   IA D  +    KF+N VL  V RK
Sbjct: 76  ------VKNLLRMSVYQLTFLDKVPEHAILNEAGDIAKDLGHQGVTKFVNGVLRNVIRK 128


>gi|154497982|ref|ZP_02036360.1| hypothetical protein BACCAP_01962 [Bacteroides capillosus ATCC
           29799]
 gi|150272972|gb|EDN00129.1| hypothetical protein BACCAP_01962 [Bacteroides capillosus ATCC
           29799]
          Length = 447

 Score = 77.1 bits (189), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 26/143 (18%), Positives = 50/143 (34%), Gaps = 14/143 (9%)

Query: 17  GIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGV 76
             AR  A+ AL   +  G  +   + +              E+     D      +  GV
Sbjct: 6   QTARETALLALSACERQGAWSDGFLKKTLR-----------EAGLDSRDAALATRLCFGV 54

Query: 77  MDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHD 136
           +  +  +D  I    T      ++++ + + LR GV ++     +P    ++E V +   
Sbjct: 55  LQNRLLLDFYIGKFSTT--RPEKMEIKVRNALRLGVYQMAFMTKIPHNAAVNESVELTKK 112

Query: 137 FF-YGDEPKFINAVLDKVSRKEE 158
                     +N VL  VSR  +
Sbjct: 113 HCKNPRAAGMVNGVLRNVSRNID 135


>gi|148241109|ref|YP_001226266.1| transcription antitermination protein NusB [Synechococcus sp.
           RCC307]
 gi|147849419|emb|CAK26913.1| Transcription termination factor, NusB [Synechococcus sp. RCC307]
          Length = 203

 Score = 77.1 bits (189), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 24/77 (31%), Positives = 36/77 (46%), Gaps = 2/77 (2%)

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
           V + +  +D  I   + E W  +RL  I   ILR  V+E+ E    P  V  +E V +AH
Sbjct: 122 VAEAQPQLDQGID-AVMEGWRLTRLPRIDQDILRLAVVEIDEFQ-TPAAVACNEAVELAH 179

Query: 136 DFFYGDEPKFINAVLDK 152
            +      + IN VL +
Sbjct: 180 RYSDEAGRRMINGVLRR 196


>gi|89098704|ref|ZP_01171586.1| sun protein [Bacillus sp. NRRL B-14911]
 gi|89086666|gb|EAR65785.1| sun protein [Bacillus sp. NRRL B-14911]
          Length = 448

 Score = 77.1 bits (189), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 27/137 (19%), Positives = 49/137 (35%), Gaps = 14/137 (10%)

Query: 20  RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79
           R AAV+ L           E I + ++Y          ++     D+     +++G + R
Sbjct: 7   REAAVELL-----------EAIEKNQSYSNLLLNSSIKKNDISSKDVGLLTELVYGTLQR 55

Query: 80  KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139
           K  +D  +   L            +  +LR    ++I    +P    I E V IA    +
Sbjct: 56  KMTLDYQMEPFLKNPKKLE---SWVRQLLRITFYQMIYLDKIPDRAAIYEAVEIAKRKGH 112

Query: 140 GDEPKFINAVLDKVSRK 156
                 +N VL  + R+
Sbjct: 113 KGISGMVNGVLRSLQRQ 129


>gi|314933391|ref|ZP_07840756.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
           caprae C87]
 gi|313653541|gb|EFS17298.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
           caprae C87]
          Length = 435

 Score = 76.7 bits (188), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 24/126 (19%), Positives = 49/126 (38%), Gaps = 12/126 (9%)

Query: 35  CSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLT-- 92
            +   I++E   Y      E+   ++   VD   F  +++G + RK  +D ++   +   
Sbjct: 11  ETIQHILNE-GAYSNLKINEVLSSNIIADVDRNLFTELVYGTIKRKYTLDYILKPFVKTK 69

Query: 93  -EKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLD 151
            + W        +  +L   + + +    VP   II+E V IA           +N +L 
Sbjct: 70  IKGW--------VRQLLWMSIYQYVYLDKVPDHAIINEAVDIAKQRGGHHNGNIVNGILR 121

Query: 152 KVSRKE 157
            + R +
Sbjct: 122 SLMRSD 127


>gi|293192811|ref|ZP_06609706.1| ribosomal RNA small subunit methyltransferase B [Actinomyces
           odontolyticus F0309]
 gi|292820058|gb|EFF79056.1| ribosomal RNA small subunit methyltransferase B [Actinomyces
           odontolyticus F0309]
          Length = 490

 Score = 76.7 bits (188), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 35/169 (20%), Positives = 68/169 (40%), Gaps = 21/169 (12%)

Query: 12  LSHRR--------GIA---RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESV 60
           +S RR          A   R  A   L++++  G     I+ +          +   +  
Sbjct: 1   MSERRYADGYRKLRKADEPRRIAYDVLHEVETQGAFANIILPKALR-------QARRDGH 53

Query: 61  YLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHS 120
           +   D  +   ++HG +     +D +IS  +      + LD     +LR G  +L++   
Sbjct: 54  FSDRDAAFTSELVHGTLRAIGRLDWVISRHIDR--PLADLDPRALVVLRMGTHQLLDMR- 110

Query: 121 VPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRSGCVSAIT 169
           VP    +S  V +A +       +F+NAVL  ++R++  +R   + AI 
Sbjct: 111 VPDHAAVSATVDVAREHLTDGPVRFVNAVLRSITREDPSEREAAMDAIA 159


>gi|225574499|ref|ZP_03783109.1| hypothetical protein RUMHYD_02576 [Blautia hydrogenotrophica DSM
           10507]
 gi|225038286|gb|EEG48532.1| hypothetical protein RUMHYD_02576 [Blautia hydrogenotrophica DSM
           10507]
          Length = 446

 Score = 76.7 bits (188), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 29/140 (20%), Positives = 59/140 (42%), Gaps = 14/140 (10%)

Query: 20  RLAAVQALYQIDIIGCSTTEIISEYET-YRFCADTELDVESVYLHVDLEWFRVIIHGVMD 78
           R   +  L  ++  G  +  +I E  T ++F    E             +   +  G ++
Sbjct: 4   RELILGILLAVNEEGEPSHRVIREVLTKHQFLPKQE-----------RAFITRVCEGTLE 52

Query: 79  RKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFF 138
            +  ID +++     K    ++  ++  ILR+ V +L    SVP   + +E V +A    
Sbjct: 53  YQITIDYILNHF--SKVKTDKMKPVIREILRSSVYQLKYMDSVPDSAVCNEAVKLAQKKG 110

Query: 139 YGDEPKFINAVLDKVSRKEE 158
           + +   F+N VL  ++R+ E
Sbjct: 111 FYNLKPFVNGVLRTIAREME 130


>gi|313623277|gb|EFR93521.1| ribosomal RNA small subunit methyltransferase B [Listeria innocua
           FSL J1-023]
          Length = 446

 Score = 76.7 bits (188), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 28/119 (23%), Positives = 48/119 (40%), Gaps = 11/119 (9%)

Query: 41  ISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTE---KWSF 97
           I   ++Y      +   +     +D      +++G   RK  +D  ++  L +    W  
Sbjct: 18  IENNQSYSHLLINDALKKQKLNPLDKGLLTELVYGTTQRKITLDYYLAPFLNKEPDNW-- 75

Query: 98  SRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRK 156
                 + ++LR  V +L     VP   I++E   IA D  +    KF+N VL  V RK
Sbjct: 76  ------VKNLLRMSVYQLTFLDKVPEHAILNEAGDIAKDLGHQGVTKFVNGVLRNVIRK 128


>gi|255282547|ref|ZP_05347102.1| ribosomal RNA small subunit methyltransferase B [Bryantella
           formatexigens DSM 14469]
 gi|255266840|gb|EET60045.1| ribosomal RNA small subunit methyltransferase B [Bryantella
           formatexigens DSM 14469]
          Length = 453

 Score = 76.7 bits (188), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 20/99 (20%), Positives = 37/99 (37%), Gaps = 6/99 (6%)

Query: 59  SVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIEC 118
                 D  +    + G M+    ID ++    T K     +   + +ILR  + ++   
Sbjct: 39  QYLEKRDRAFISRTVEGTMENMIQIDYILEQFSTVK--VQNMKPAIRNILRMSIYQMQYM 96

Query: 119 HSVPVEVIISEYVCIA--HDFFYGDEPKFINAVLDKVSR 155
             VP   +++E V +     F+      F+N VL    R
Sbjct: 97  DGVPHAAVVNEAVKLTQKKGFYTLK--GFVNGVLRAAER 133


>gi|16801002|ref|NP_471270.1| hypothetical protein lin1936 [Listeria innocua Clip11262]
 gi|16414437|emb|CAC97166.1| lin1936 [Listeria innocua Clip11262]
          Length = 446

 Score = 76.7 bits (188), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 28/119 (23%), Positives = 48/119 (40%), Gaps = 11/119 (9%)

Query: 41  ISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTE---KWSF 97
           I   ++Y      +   +     +D      +++G   RK  +D  ++  L +    W  
Sbjct: 18  IENNQSYSHLLINDALKKQKLNPLDKGLLTELVYGTTQRKITLDYYLAPFLNKEPDNW-- 75

Query: 98  SRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRK 156
                 + ++LR  V +L     VP   I++E   IA D  +    KF+N VL  V RK
Sbjct: 76  ------VKNLLRMSVYQLTFLDKVPEHAILNEAGDIAKDLGHQGVTKFVNGVLRNVIRK 128


>gi|313618293|gb|EFR90347.1| ribosomal RNA small subunit methyltransferase B [Listeria innocua
           FSL S4-378]
          Length = 446

 Score = 76.7 bits (188), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 28/119 (23%), Positives = 48/119 (40%), Gaps = 11/119 (9%)

Query: 41  ISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTE---KWSF 97
           I   ++Y      +   +     +D      +++G   RK  +D  ++  L +    W  
Sbjct: 18  IENNQSYSHLLINDALKKQKLNPLDKGLLTELVYGTTQRKITLDYYLAPFLNKEPDNW-- 75

Query: 98  SRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRK 156
                 + ++LR  V +L     VP   I++E   IA D  +    KF+N VL  V RK
Sbjct: 76  ------VKNLLRMSVYQLTFLDKVPEHAILNEAGDIAKDLGHQGVTKFVNGVLRNVIRK 128


>gi|154508791|ref|ZP_02044433.1| hypothetical protein ACTODO_01300 [Actinomyces odontolyticus ATCC
           17982]
 gi|153798425|gb|EDN80845.1| hypothetical protein ACTODO_01300 [Actinomyces odontolyticus ATCC
           17982]
          Length = 490

 Score = 76.7 bits (188), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 36/169 (21%), Positives = 69/169 (40%), Gaps = 21/169 (12%)

Query: 12  LSHRR--------GIA---RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESV 60
           +S RR          A   R  A   L++++  G  T  I+ +          +   +  
Sbjct: 1   MSERRYADGYRKLRKADEPRRIAYDVLHEVETQGAFTNIILPKALR-------QARRDGH 53

Query: 61  YLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHS 120
           +   D  +   ++HG +     +D +IS  +      + LD     +LR G  +L++   
Sbjct: 54  FSDRDAAFTSELVHGTLRAIGRLDWVISRHIDR--PLADLDPRALVVLRMGAHQLLDMR- 110

Query: 121 VPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRSGCVSAIT 169
           VP    +S  V +A +       +F+NAVL  ++R++  +R   + AI 
Sbjct: 111 VPDHAAVSATVDVAREHLTDGPVRFVNAVLRSITREDPSEREAAMDAIA 159


>gi|168334695|ref|ZP_02692831.1| sun protein [Epulopiscium sp. 'N.t. morphotype B']
          Length = 229

 Score = 76.7 bits (188), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 28/138 (20%), Positives = 50/138 (36%), Gaps = 15/138 (10%)

Query: 20  RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79
           R   V AL           ++  E    +     +L++       D      I  G +  
Sbjct: 5   REIVVDAL----------VKVEKEGAYLQLVLKKDLEILES---RDRGLATEIATGTLKY 51

Query: 80  KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139
           +  ID +I+         S++   + +++R  V +L     VP    I+E V +A    +
Sbjct: 52  QIAIDYIINQ--VSSIKVSKMKPFIRNLMRISVYQLRYLDKVPAHAAINEAVKLAKSRGF 109

Query: 140 GDEPKFINAVLDKVSRKE 157
               KF+N VL  + R  
Sbjct: 110 AGLSKFVNGVLRSIERSN 127


>gi|148238346|ref|YP_001223733.1| transcription antitermination protein NusB [Synechococcus sp. WH
           7803]
 gi|147846885|emb|CAK22436.1| Transcription termination factor, NusB [Synechococcus sp. WH 7803]
          Length = 210

 Score = 76.7 bits (188), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 24/78 (30%), Positives = 38/78 (48%), Gaps = 2/78 (2%)

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
           V+D +  +D  + S + E W  SRL  I   ILR  V++L      P  V  +E V +A+
Sbjct: 126 VLDARPSLDDQLDSVM-EGWRLSRLPRIDRDILRLAVVDLQSMK-TPASVACNEAVELAN 183

Query: 136 DFFYGDEPKFINAVLDKV 153
            +      + IN VL ++
Sbjct: 184 RYSDEQGRRMINGVLRRL 201


>gi|226509228|ref|NP_001150841.1| LOC100284474 [Zea mays]
 gi|195642298|gb|ACG40617.1| RNA binding protein [Zea mays]
          Length = 280

 Score = 76.7 bits (188), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 30/138 (21%), Positives = 53/138 (38%), Gaps = 19/138 (13%)

Query: 34  GCSTTEIISEYETYRFCADTELDVES-----------VYLHVDLEWFRVIIHGVM----D 78
           G    E+ +E E  +  +  E D  +           VY +  L   R ++  V      
Sbjct: 136 GGGPLEVGTEEEAEKLTSQNEKDSANEADVLSAPPKLVYNNFVLRLSRELLVAVASGWDK 195

Query: 79  RKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFF 138
             + ID +I     ++   +R+  +   IL   + E+      P +V+I+E V +A  F 
Sbjct: 196 HVEIIDKIIPQAWKDE-PVARI--LELCILHIAMAEMT-SKGTPHKVVINEAVDLAKRFC 251

Query: 139 YGDEPKFINAVLDKVSRK 156
            G  P+ IN  L    + 
Sbjct: 252 DGGAPRVINGCLRTFVKD 269


>gi|194476880|ref|YP_002049059.1| transcription antitermination protein NusB [Paulinella
           chromatophora]
 gi|171191887|gb|ACB42849.1| transcription antitermination protein NusB [Paulinella
           chromatophora]
          Length = 203

 Score = 76.7 bits (188), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 20/81 (24%), Positives = 37/81 (45%), Gaps = 2/81 (2%)

Query: 73  IHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVC 132
           +  V+  ++ ID  +   + E W   RL  I   ILR   ++L +    P  V  +E V 
Sbjct: 121 VRFVLSNREKIDQRLD-AVMENWRLIRLPRIDRDILRLASVDL-DRLGTPAAVACNEAVE 178

Query: 133 IAHDFFYGDEPKFINAVLDKV 153
           +A+ +      + IN +L ++
Sbjct: 179 MANRYSDEQGRRMINGILRRL 199


>gi|153809822|ref|ZP_01962490.1| hypothetical protein RUMOBE_00203 [Ruminococcus obeum ATCC 29174]
 gi|149834000|gb|EDM89080.1| hypothetical protein RUMOBE_00203 [Ruminococcus obeum ATCC 29174]
          Length = 450

 Score = 76.7 bits (188), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 30/139 (21%), Positives = 53/139 (38%), Gaps = 12/139 (8%)

Query: 20  RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79
           R   ++ L QID           E E         L         +  +   +  G ++ 
Sbjct: 8   REMIMEILLQID----------EEGEHSHIAIRNALSKYQFLPKQERAFITRVCEGTLEY 57

Query: 80  KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139
           +  ID +I S    K    ++   +  ILR+ V +L     VP   + +E V +A    +
Sbjct: 58  RILIDYIIDSF--SKIPVDKMKPPIREILRSAVYQLKFMDRVPDSAVCNEAVKLAQKKGF 115

Query: 140 GDEPKFINAVLDKVSRKEE 158
            +   F+N VL  V+R+ +
Sbjct: 116 YNLKPFVNGVLRTVARQMD 134


>gi|21219974|ref|NP_625753.1| putative Sun-family protein [Streptomyces coelicolor A3(2)]
 gi|289772815|ref|ZP_06532193.1| RNA-binding Sun protein [Streptomyces lividans TK24]
 gi|7209232|emb|CAB76894.1| conserved hypothetical Sun-family protein SCL6.29c [Streptomyces
           coelicolor A3(2)]
 gi|289703014|gb|EFD70443.1| RNA-binding Sun protein [Streptomyces lividans TK24]
          Length = 475

 Score = 76.7 bits (188), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 33/161 (20%), Positives = 61/161 (37%), Gaps = 11/161 (6%)

Query: 1   MTIQDNKKDLKLSHRRGI----ARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELD 56
           M+ Q  +        R       R+ A +AL  +D        ++            E +
Sbjct: 1   MSEQPRRPRKTGKPYRRPQKDPVRMLAFEALRAVDERDAYANLVLPPLLRKA----REKE 56

Query: 57  VESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELI 116
               +   D      +++G + R+   D +I+ C+        +D  +  +L  GV +L+
Sbjct: 57  GPEKFDARDAALATELVYGTLRRQGTYDAIIADCVDR--PLREVDPPVLDVLSLGVHQLL 114

Query: 117 ECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKE 157
               +P    +S  V +A         KF+NAVL KV+R +
Sbjct: 115 GTR-IPSHAAVSASVELARVVLGDGRAKFVNAVLRKVARDD 154


>gi|220931836|ref|YP_002508744.1| sun protein [Halothermothrix orenii H 168]
 gi|219993146|gb|ACL69749.1| sun protein [Halothermothrix orenii H 168]
          Length = 440

 Score = 76.7 bits (188), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 30/142 (21%), Positives = 60/142 (42%), Gaps = 15/142 (10%)

Query: 17  GIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGV 76
            I+R  A++ L +ID  G  +  ++++            ++  V    D  +   +++GV
Sbjct: 2   SISRKVAIKVLIEID-KGAYSNLVLNK------------ELNKVSDKRDRAFITELVYGV 48

Query: 77  MDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHD 136
           + +K+ +D ++S          ++D  + S LR  + ++    SVP    + E V     
Sbjct: 49  LRQKKRLDYMLSCFSKR--PLRKMDNEVLSALRVALYQIEYTDSVPARAAVYETVEALKS 106

Query: 137 FFYGDEPKFINAVLDKVSRKEE 158
           F      KF N VL    R ++
Sbjct: 107 FTGHGAVKFTNGVLRSYLRNKD 128


>gi|329767015|ref|ZP_08258543.1| ribosomal RNA small subunit methyltransferase B [Gemella
           haemolysans M341]
 gi|328837740|gb|EGF87365.1| ribosomal RNA small subunit methyltransferase B [Gemella
           haemolysans M341]
          Length = 441

 Score = 76.3 bits (187), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 25/137 (18%), Positives = 51/137 (37%), Gaps = 16/137 (11%)

Query: 19  ARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMD 78
           AR  A + LY I      +   +++Y       +            D  +   +++G + 
Sbjct: 6   ARQIAYEVLYTIIQEDGYSNITLNKYFNQYKIQEQ-----------DKRFISEVVYGTIK 54

Query: 79  RKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFF 138
            K +++ ++ S         R+   +  IL   + +L+     P   II E V ++    
Sbjct: 55  NKIYLEHILKSYSKG-----RVKPKVKVILSMSIYQLLYMDKTPNFAIIDEAVKLSKKVA 109

Query: 139 YGDEPKFINAVLDKVSR 155
                KF+N +L  + R
Sbjct: 110 GNITGKFVNGILRNIER 126


>gi|254519240|ref|ZP_05131296.1| sun protein [Clostridium sp. 7_2_43FAA]
 gi|226912989|gb|EEH98190.1| sun protein [Clostridium sp. 7_2_43FAA]
          Length = 439

 Score = 76.3 bits (187), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 26/141 (18%), Positives = 53/141 (37%), Gaps = 15/141 (10%)

Query: 18  IARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVM 77
            +R  A Q +            ++ E          EL+        D      I++G +
Sbjct: 2   KSRKLARQII----------QRVLEEGAYSNLVLSNELN-NIDIEDKDKGLITEIVYGTL 50

Query: 78  DRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDF 137
            RK+ +D+LI + +      + +D  + +ILR  + ++     +P     +E V  A + 
Sbjct: 51  RRKRTLDVLIGNFVK---DINLIDTTVLNILRVAIYQMYFLDKIPEYAACNEAVEEAKEV 107

Query: 138 FYGDEPKFINAVLDKVSRKEE 158
                 K +N +L    + E+
Sbjct: 108 SLEAS-KLVNGILRNYIKDEK 127


>gi|238916656|ref|YP_002930173.1| Sun protein [Eubacterium eligens ATCC 27750]
 gi|238872016|gb|ACR71726.1| Sun protein [Eubacterium eligens ATCC 27750]
          Length = 434

 Score = 76.3 bits (187), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 20/122 (16%), Positives = 47/122 (38%), Gaps = 2/122 (1%)

Query: 37  TTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWS 96
             EI  + E      +  L            +   +  G ++ +  +D +I      K  
Sbjct: 15  LMEINEKGEFSHLLINNALTKYQYLDKNKRAFISRLSLGTIENRIELDYIIDQY--SKTP 72

Query: 97  FSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRK 156
             ++  ++ +I    V ++I   ++P   + +E V +A    +     F+N VL  ++R 
Sbjct: 73  VRKMKPLIRNICEMSVYQIIYMDNIPDSAVCNEAVKLATKRGFTGLKGFVNGVLRNIARN 132

Query: 157 EE 158
           ++
Sbjct: 133 KD 134


>gi|297570244|ref|YP_003691588.1| sun protein [Desulfurivibrio alkaliphilus AHT2]
 gi|296926159|gb|ADH86969.1| sun protein [Desulfurivibrio alkaliphilus AHT2]
          Length = 501

 Score = 76.3 bits (187), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 25/141 (17%), Positives = 60/141 (42%), Gaps = 19/141 (13%)

Query: 20  RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79
           R  A++ L Q +       ++++EY   R+ +D            D +  R +++ V+ R
Sbjct: 19  RQVALEILLQQEQQNRPLDQVLAEYPARRWPSDR----------RDRQLVRALVYEVLRR 68

Query: 80  KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139
           +  +D +++         +++  +  + LR G+ +L+    +P    I E +        
Sbjct: 69  RGFLDHVVARYAKH--PLAKMKPLTLAALRLGLAQLLYFDRLPPAAAIDETI---RALKA 123

Query: 140 GDEPK----FINAVLDKVSRK 156
             +P+    F+N +L   +R+
Sbjct: 124 ARQPRWITGFVNGLLRNAARE 144


>gi|291484126|dbj|BAI85201.1| hypothetical protein BSNT_02587 [Bacillus subtilis subsp. natto
           BEST195]
          Length = 447

 Score = 76.3 bits (187), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 22/142 (15%), Positives = 52/142 (36%), Gaps = 14/142 (9%)

Query: 15  RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74
           ++   R  A++AL +++     +  ++         +D            D      +++
Sbjct: 2   KKTSVRDIALEALIKLEQNQAYSNLLLKSVIKSNELSDQ-----------DRGLLTELVY 50

Query: 75  GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134
           G +  K  +D ++   + +          +  +LR  + ++     +P    I E V IA
Sbjct: 51  GTLQNKIALDYMLKPFINKPQKVK---PWVIQLLRLSLYQMEYLEKIPDRAAIHEAVEIA 107

Query: 135 HDFFYGDEPKFINAVLDKVSRK 156
               +     F+N VL  + R+
Sbjct: 108 KIRGHKGIASFVNGVLRSIQRE 129


>gi|321315340|ref|YP_004207627.1| 16S rRNA methyltransferase B [Bacillus subtilis BSn5]
 gi|320021614|gb|ADV96600.1| 16S rRNA methyltransferase B [Bacillus subtilis BSn5]
          Length = 447

 Score = 76.3 bits (187), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 22/142 (15%), Positives = 52/142 (36%), Gaps = 14/142 (9%)

Query: 15  RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74
           ++   R  A++AL +++     +  ++         +D            D      +++
Sbjct: 2   KKTSVRDIALEALIKLEQNQAYSNLLLKSVIKSNELSDQ-----------DRGLLTELVY 50

Query: 75  GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134
           G +  K  +D ++   + +          +  +LR  + ++     +P    I E V IA
Sbjct: 51  GTLQNKIALDYMLKPFINKPQKVK---PWVIQLLRLSLYQMEYLEKIPDRAAIHEAVEIA 107

Query: 135 HDFFYGDEPKFINAVLDKVSRK 156
               +     F+N VL  + R+
Sbjct: 108 KIRGHKGIASFVNGVLRSIQRE 129


>gi|289435165|ref|YP_003465037.1| sun protein [Listeria seeligeri serovar 1/2b str. SLCC3954]
 gi|289171409|emb|CBH27953.1| sun protein [Listeria seeligeri serovar 1/2b str. SLCC3954]
          Length = 446

 Score = 76.3 bits (187), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 30/146 (20%), Positives = 55/146 (37%), Gaps = 22/146 (15%)

Query: 14  HRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVII 73
            ++   R  A++ +             I   ++Y      +   +     +D      ++
Sbjct: 2   KKQKTVREIALELI-----------IKIENNQSYSHLLINDALKKQKLNLLDKGLLTELV 50

Query: 74  HGVMDRKQHIDLLISSCLTE---KWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEY 130
           +G   RK  +D  ++  L +    W        + ++LR  V +L     VP   I++E 
Sbjct: 51  YGTTQRKITLDYYLAPFLNKEPDNW--------VKNLLRMSVYQLTFLDKVPEHAILNEA 102

Query: 131 VCIAHDFFYGDEPKFINAVLDKVSRK 156
             IA D  +    KF+N VL  V RK
Sbjct: 103 GDIAKDLGHQGVTKFVNGVLRNVIRK 128


>gi|229006142|ref|ZP_04163829.1| Ribosomal RNA small subunit methyltransferase B [Bacillus mycoides
           Rock1-4]
 gi|228755095|gb|EEM04453.1| Ribosomal RNA small subunit methyltransferase B [Bacillus mycoides
           Rock1-4]
          Length = 415

 Score = 76.3 bits (187), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 21/100 (21%), Positives = 42/100 (42%), Gaps = 5/100 (5%)

Query: 57  VESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELI 116
            +S     D+     I++G + R+  +D  +   L +K     ++  +  +LR  + +++
Sbjct: 3   EKSAIDRKDIGLLTEIVYGTIQRRDTLDYYLQPFLRKK-----VEAWVKILLRLSLYQML 57

Query: 117 ECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRK 156
               VP    I E V IA    +      +N VL  + R+
Sbjct: 58  YLDRVPERAAIHEAVEIAKRRGHKGIAGMVNGVLRSIQRE 97


>gi|254455633|ref|ZP_05069062.1| antitermination protein NusB [Candidatus Pelagibacter sp. HTCC7211]
 gi|207082635|gb|EDZ60061.1| antitermination protein NusB [Candidatus Pelagibacter sp. HTCC7211]
          Length = 134

 Score = 76.3 bits (187), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 29/123 (23%), Positives = 58/123 (47%), Gaps = 3/123 (2%)

Query: 40  IISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSR 99
           II +     +  D  LD          ++ + I+ G ++R   I   + + L  ++ F  
Sbjct: 15  IIQKLYGKFYNEDNNLDFPKHRFK---KFIKDIVLGTIERNDLILSELDTKLGNEFVFEN 71

Query: 100 LDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEI 159
           LD +  +IL+A   E +   +V + +II EY+  ++ F    + K++NA+LD + +K   
Sbjct: 72  LDKVFQTILKAATYEFLYKPNVSINIIIKEYLNSSNFFLENSQTKYLNALLDNIGKKLRS 131

Query: 160 KRS 162
             +
Sbjct: 132 NNA 134


>gi|32490464|dbj|BAC79124.1| putative transcription termination protein [Streptomyces griseus]
          Length = 66

 Score = 76.3 bits (187), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 18/41 (43%), Positives = 22/41 (53%)

Query: 108 LRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINA 148
           LR G  ELI     P  V+I E V +A +F   D P F+NA
Sbjct: 19  LRLGAYELIWMDGTPDAVVIDEAVQLAKEFSTDDSPSFVNA 59


>gi|228992593|ref|ZP_04152520.1| Ribosomal RNA small subunit methyltransferase B [Bacillus
           pseudomycoides DSM 12442]
 gi|228998641|ref|ZP_04158228.1| Ribosomal RNA small subunit methyltransferase B [Bacillus mycoides
           Rock3-17]
 gi|228761109|gb|EEM10068.1| Ribosomal RNA small subunit methyltransferase B [Bacillus mycoides
           Rock3-17]
 gi|228767227|gb|EEM15863.1| Ribosomal RNA small subunit methyltransferase B [Bacillus
           pseudomycoides DSM 12442]
          Length = 415

 Score = 76.3 bits (187), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 21/100 (21%), Positives = 42/100 (42%), Gaps = 5/100 (5%)

Query: 57  VESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELI 116
            +S     D+     I++G + R+  +D  +   L +K     ++  +  +LR  + +++
Sbjct: 3   EKSAIDRKDIGLLTEIVYGTIQRRDTLDYYLQPFLRKK-----VEAWVKILLRLSLYQML 57

Query: 117 ECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRK 156
               VP    I E V IA    +      +N VL  + R+
Sbjct: 58  YLDRVPERAAIHEAVEIAKRRGHKGIAGMVNGVLRSIQRE 97


>gi|291557813|emb|CBL34930.1| ribosomal RNA small subunit methyltransferase RsmB [Eubacterium
           siraeum V10Sc8a]
          Length = 439

 Score = 76.3 bits (187), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 31/154 (20%), Positives = 62/154 (40%), Gaps = 13/154 (8%)

Query: 17  GIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGV 76
             AR   +  L ++D  G  +  I+     + F        ++     D  +   + +GV
Sbjct: 2   KTARQITLDLLIRMDTQGAYSNIILD----HAFT-------QNDADRRDKAFSAALFYGV 50

Query: 77  MDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHD 136
           ++R+  +D LI         F ++   +  ILR G  +L+  +SVP    ++E V +   
Sbjct: 51  LERRMTLDYLIRYY--SGIEFDKIKTAVVEILRMGFYQLLFMNSVPDSAAVNESVALCDY 108

Query: 137 FFYGDEPKFINAVLDKVSRKEEIKRSGCVSAITQ 170
                   ++NA+L    R E+    G ++   +
Sbjct: 109 CNSTKAKGYVNAILRTFLRNEKQIDYGNLTGEAK 142


>gi|317129258|ref|YP_004095540.1| sun protein [Bacillus cellulosilyticus DSM 2522]
 gi|315474206|gb|ADU30809.1| sun protein [Bacillus cellulosilyticus DSM 2522]
          Length = 449

 Score = 75.9 bits (186), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 19/117 (16%), Positives = 45/117 (38%), Gaps = 2/117 (1%)

Query: 41  ISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRL 100
           I + + Y      E   +S     D+     +++G +  ++ +D  +           +L
Sbjct: 17  IEKQQAYSHLLLNETIKKSNLNQKDVPLLTELVYGTIQYQKLLDFYLKPFSKR--PLEKL 74

Query: 101 DMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKE 157
           +  +  +LR  + +++    +P    + E V IA    +      +N +L  + R E
Sbjct: 75  EPWVLVLLRLTLYQMVYLDRIPDRAAVHEAVQIAKKRGHQGISGMVNGILRSIQRNE 131


>gi|319649620|ref|ZP_08003776.1| sun protein [Bacillus sp. 2_A_57_CT2]
 gi|317398782|gb|EFV79464.1| sun protein [Bacillus sp. 2_A_57_CT2]
          Length = 451

 Score = 75.9 bits (186), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 25/142 (17%), Positives = 51/142 (35%), Gaps = 14/142 (9%)

Query: 15  RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74
           ++   R  A++ L           E I + ++Y          ++     D+     + +
Sbjct: 5   KKKNVRETALELL-----------EAIEKNQSYSNLLLNNAIKKNEIDQKDIGLLTELTY 53

Query: 75  GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134
           G + R+  +D  +   L           +   +LR  + +++    +P    I E V IA
Sbjct: 54  GTLQRRMTLDFYLQPFLAGNKKIE--SWVN-QLLRLTLYQMVFLDKIPDRAAIFEAVEIA 110

Query: 135 HDFFYGDEPKFINAVLDKVSRK 156
             + +      +N VL  V RK
Sbjct: 111 KRWGHKGISGMVNGVLRNVQRK 132


>gi|167750828|ref|ZP_02422955.1| hypothetical protein EUBSIR_01811 [Eubacterium siraeum DSM 15702]
 gi|167656263|gb|EDS00393.1| hypothetical protein EUBSIR_01811 [Eubacterium siraeum DSM 15702]
          Length = 439

 Score = 75.9 bits (186), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 31/154 (20%), Positives = 62/154 (40%), Gaps = 13/154 (8%)

Query: 17  GIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGV 76
             AR   +  L ++D  G  +  I+     + F        ++     D  +   + +GV
Sbjct: 2   KTARQITLDLLIRMDTQGAYSNIILD----HAFT-------QNDADRRDKAFSAALFYGV 50

Query: 77  MDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHD 136
           ++R+  +D LI         F ++   +  ILR G  +L+  +SVP    ++E V +   
Sbjct: 51  LERRMTLDYLIRYY--SGIEFDKIKTAVVEILRMGFYQLLFMNSVPDSAAVNESVALCDY 108

Query: 137 FFYGDEPKFINAVLDKVSRKEEIKRSGCVSAITQ 170
                   ++NA+L    R E+    G ++   +
Sbjct: 109 CNSTKAKGYVNAILRTFLRNEKQIDYGNLTGEAK 142


>gi|304404144|ref|ZP_07385806.1| sun protein [Paenibacillus curdlanolyticus YK9]
 gi|304347122|gb|EFM12954.1| sun protein [Paenibacillus curdlanolyticus YK9]
          Length = 521

 Score = 75.9 bits (186), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 23/141 (16%), Positives = 57/141 (40%), Gaps = 13/141 (9%)

Query: 18  IARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVM 77
            AR  A++AL +I+     +  +++    +           +     D      +++G +
Sbjct: 66  TAREVALEALVKIEREEAFSNLVLNSALQH-----------AELSRADAGLATELVYGTL 114

Query: 78  DRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDF 137
            R+  +D  +S+   +     +L+  +  +LR    +L+    +P    ++E V IA   
Sbjct: 115 QRRLSLDHALSALAAKG--LGKLEPWVLQLLRLSAYQLLFLDRIPAHAAVNEAVAIAKRR 172

Query: 138 FYGDEPKFINAVLDKVSRKEE 158
            +      +N +L  + R+ +
Sbjct: 173 GHSGISGMVNGMLRNLLRRRD 193


>gi|332976420|gb|EGK13268.1| RNA methyltransferase Sun [Desmospora sp. 8437]
          Length = 453

 Score = 75.9 bits (186), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 29/138 (21%), Positives = 50/138 (36%), Gaps = 13/138 (9%)

Query: 19  ARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMD 78
           AR  A+  L             + E   Y      +    S     D      +++G + 
Sbjct: 7   ARNVALDVL-----------IAVEERGAYSNLLLNDRLQRSSLSPRDRGLATELVYGTLQ 55

Query: 79  RKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFF 138
           RK  +D +++  + +      LD  +  +LR G+ +L     VP    + E V IA    
Sbjct: 56  RKNTLDWILNKLVRKG--IDTLDPWVRHLLRLGIYQLRYLDRVPSRAAVHETVEIAKARG 113

Query: 139 YGDEPKFINAVLDKVSRK 156
           +   P  +N VL    R+
Sbjct: 114 HRGIPGLVNGVLRSYLRR 131


>gi|16329552|ref|NP_440280.1| Fmu and Fmv protein [Synechocystis sp. PCC 6803]
 gi|2500952|sp|P72943|RSMB_SYNY3 RecName: Full=Ribosomal RNA small subunit methyltransferase B;
           AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
           rsmB
 gi|1652035|dbj|BAA16960.1| Fmu and Fmv protein [Synechocystis sp. PCC 6803]
          Length = 446

 Score = 75.9 bits (186), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 28/144 (19%), Positives = 53/144 (36%), Gaps = 13/144 (9%)

Query: 19  ARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMD 78
           AR  A   L             I+  ++Y   A      +      D  +   +++GV+ 
Sbjct: 4   ARQLAFLIL-----------RDINRRDSYTDVAIDRALQKHPLSPPDRRFCTELVYGVVR 52

Query: 79  RKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFF 138
           R++ +D LI           +    L  I++ G+ +L     VP    ++  V +A    
Sbjct: 53  RQRTLDCLIEQLGDR--PIGKQPPDLRRIVQLGLYQLRYLDQVPASAAVNTGVDLAKANG 110

Query: 139 YGDEPKFINAVLDKVSRKEEIKRS 162
                K +N +L +  R EE  ++
Sbjct: 111 LKGLSKVVNGMLRRYQRAEEQGKN 134


>gi|291530595|emb|CBK96180.1| ribosomal RNA small subunit methyltransferase RsmB [Eubacterium
           siraeum 70/3]
          Length = 439

 Score = 75.9 bits (186), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 31/154 (20%), Positives = 62/154 (40%), Gaps = 13/154 (8%)

Query: 17  GIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGV 76
             AR   +  L ++D  G  +  I+     + F        ++     D  +   + +GV
Sbjct: 2   KTARQITLDLLIRMDTQGAYSNIILD----HAFT-------QNDADRRDKAFSAALFYGV 50

Query: 77  MDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHD 136
           ++R+  +D LI         F ++   +  ILR G  +L+  +SVP    ++E V +   
Sbjct: 51  LERRMTLDYLIRYY--SGIEFDKIKTAVVEILRMGFYQLLFMNSVPDSAAVNESVALCDY 108

Query: 137 FFYGDEPKFINAVLDKVSRKEEIKRSGCVSAITQ 170
                   ++NA+L    R E+    G ++   +
Sbjct: 109 CNSTKAKGYVNAILRTFLRNEKQIDYGNLTGEAK 142


>gi|258511305|ref|YP_003184739.1| sun protein [Alicyclobacillus acidocaldarius subsp. acidocaldarius
           DSM 446]
 gi|257478031|gb|ACV58350.1| sun protein [Alicyclobacillus acidocaldarius subsp. acidocaldarius
           DSM 446]
          Length = 451

 Score = 75.9 bits (186), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 29/139 (20%), Positives = 53/139 (38%), Gaps = 14/139 (10%)

Query: 20  RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79
           R  A QAL +++  G      + E               +     D      I +G + R
Sbjct: 6   RRRAYQALIRVERDGAFLNAALQEALA-----------GAGVDERDRALATEIAYGTLRR 54

Query: 80  KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139
           +  +D L+S  +      S+LD  +  ILR G  ++   + VP     ++ V +A     
Sbjct: 55  QITLDRLLSPLVRR--PMSKLDPEVRVILRMGAYQMTWLNRVPAYAAANDAVELAKRH-R 111

Query: 140 GDEPKFINAVLDKVSRKEE 158
                 +NAVL + + + +
Sbjct: 112 PQAAALVNAVLRRYAERAQ 130


>gi|318042975|ref|ZP_07974931.1| transcription antitermination protein NusB [Synechococcus sp.
           CB0101]
          Length = 205

 Score = 75.9 bits (186), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 19/80 (23%), Positives = 37/80 (46%), Gaps = 2/80 (2%)

Query: 74  HGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCI 133
             V+  ++ +D  +   + E W  +RL  I   ILR   +++ +  + P  V  +E V +
Sbjct: 124 RAVLRSREDLDQRLD-AVMEGWRLTRLPRIDRDILRLAAVDIEQF-NTPAAVACNEAVEL 181

Query: 134 AHDFFYGDEPKFINAVLDKV 153
           A+ +      + IN VL + 
Sbjct: 182 ANRYSDEQGRRMINGVLRRF 201


>gi|260578784|ref|ZP_05846691.1| RNA methyltransferase Sun [Corynebacterium jeikeium ATCC 43734]
 gi|258603082|gb|EEW16352.1| RNA methyltransferase Sun [Corynebacterium jeikeium ATCC 43734]
          Length = 513

 Score = 75.9 bits (186), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 20/100 (20%), Positives = 40/100 (40%), Gaps = 3/100 (3%)

Query: 58  ESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIE 117
           E+     D  +   + +G +  +  +D +I           R+D +    LR G  +++ 
Sbjct: 73  EAGIKGRDAAFATELTYGTLRARGLLDAIIEDA--AGRKIERIDSVALDALRLGAYQIL- 129

Query: 118 CHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKE 157
              V     ++  V +   F  G    F+N VL  ++RK+
Sbjct: 130 RTRVENHAAVNTSVELVKAFGAGQASGFVNGVLRALTRKK 169


>gi|222529034|ref|YP_002572916.1| Fmu (Sun) domain-containing protein [Caldicellulosiruptor bescii
           DSM 6725]
 gi|222455881|gb|ACM60143.1| Fmu (Sun) domain protein [Caldicellulosiruptor bescii DSM 6725]
          Length = 406

 Score = 75.9 bits (186), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 27/110 (24%), Positives = 46/110 (41%), Gaps = 6/110 (5%)

Query: 54  ELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVL 113
           E   + +    D   F  ++HGV+  K  ID  I+    +     R+     +ILR    
Sbjct: 2   EKFHQKLKNEKDRALFVELVHGVLRYKSLIDYYINFVAKKGVKDKRI----LNILRVATY 57

Query: 114 ELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSR-KEEIKRS 162
           EL+    +P    ++E   +A          F+NA+L  + R K +I+ S
Sbjct: 58  ELLFLEKIPEYATVNEACEVASKI-NPHLKAFVNAILRNIIRNKNQIEES 106


>gi|228475051|ref|ZP_04059779.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
           hominis SK119]
 gi|314936621|ref|ZP_07843968.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
           hominis subsp. hominis C80]
 gi|228271036|gb|EEK12424.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
           hominis SK119]
 gi|313655240|gb|EFS18985.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
           hominis subsp. hominis C80]
          Length = 435

 Score = 75.5 bits (185), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 26/138 (18%), Positives = 53/138 (38%), Gaps = 16/138 (11%)

Query: 20  RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79
           R  A Q          S  +I+++   Y      E+  +     VD   F  +++G + R
Sbjct: 6   RDLAFQ----------SIQDILND-NAYSNLKINEVINQYNIATVDKALFTELVYGTIKR 54

Query: 80  KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139
           K  +D  +   +      +R+   +  +L   + + +    +P   II+E V IA     
Sbjct: 55  KMTLDFYLKPFVK-----TRIKGWVRQLLWMSLYQYVFLDKIPNHAIINEAVNIAKRRGG 109

Query: 140 GDEPKFINAVLDKVSRKE 157
                 +NA+L  + + +
Sbjct: 110 QHNGNIVNAILRHIFKSD 127


>gi|15924207|ref|NP_371741.1| RNA-binding Sun protein [Staphylococcus aureus subsp. aureus Mu50]
 gi|15926800|ref|NP_374333.1| hypothetical protein SA1060 [Staphylococcus aureus subsp. aureus
           N315]
 gi|156979538|ref|YP_001441797.1| hypothetical protein SAHV_1207 [Staphylococcus aureus subsp. aureus
           Mu3]
 gi|13701017|dbj|BAB42312.1| SA1060 [Staphylococcus aureus subsp. aureus N315]
 gi|14246987|dbj|BAB57379.1| similar to RNA-binding Sun protein [Staphylococcus aureus subsp.
           aureus Mu50]
 gi|156721673|dbj|BAF78090.1| hypothetical protein [Staphylococcus aureus subsp. aureus Mu3]
 gi|285816899|gb|ADC37386.1| Ribosomal RNA small subunit methyltransferase B [Staphylococcus
           aureus 04-02981]
          Length = 461

 Score = 75.5 bits (185), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 25/123 (20%), Positives = 50/123 (40%), Gaps = 6/123 (4%)

Query: 35  CSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEK 94
            +  +I++E   Y      E+  E+    +D   F  I++G + RK  +D  +   +  K
Sbjct: 37  DTIQDILNE-GAYSNLRINEVLSENELNAMDKALFTEIVYGTVKRKYTLDFYLKPFVKTK 95

Query: 95  WSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVS 154
                +   +  +L   + + +    VP   II+E V IA +         +N +L  + 
Sbjct: 96  -----IKAWVRQLLWMSIYQYVYLDKVPNHAIINEAVEIAKERGGYHNGNVVNGILRTMM 150

Query: 155 RKE 157
           R +
Sbjct: 151 RSD 153


>gi|297155758|gb|ADI05470.1| RNA-binding Sun protein [Streptomyces bingchenggensis BCW-1]
          Length = 485

 Score = 75.5 bits (185), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 31/160 (19%), Positives = 59/160 (36%), Gaps = 12/160 (7%)

Query: 1   MTIQDNKK------DLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTE 54
           M+ Q  +             ++   R+ A +AL  +D        ++           TE
Sbjct: 1   MSPQPGRPRRSAPGKPYRRPKKDPVRILAFEALRAVDERDAYANLVLPPLLRKARQDSTE 60

Query: 55  LDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLE 114
                 +   D      +++G + R+   D +I+ C+        +D  +  +L  G  +
Sbjct: 61  AKP---FDARDAALATELVYGTLRRQGTYDAIIAECVDR--PLREVDPPVLDVLSLGAHQ 115

Query: 115 LIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVS 154
           L+    +P    +S  V +A         KF+NAVL KV+
Sbjct: 116 LLGTR-IPTHAAVSASVELARVVLGDGRAKFVNAVLRKVA 154


>gi|293572652|ref|ZP_06683620.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
           faecium E980]
 gi|291607238|gb|EFF36592.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
           faecium E980]
          Length = 452

 Score = 75.5 bits (185), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 25/116 (21%), Positives = 47/116 (40%), Gaps = 3/116 (2%)

Query: 53  TELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGV 112
            E+  +S     D+  F  +I+G +  ++ ++  ++  + +       D +  ++L   V
Sbjct: 35  NEMIKQSELNQKDVGLFTELIYGTISHQRLLEFYVAPLIAKAKKVD--DWV-KTLLYLSV 91

Query: 113 LELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRSGCVSAI 168
            +L     VP   I++E V IA         KF+N VL    R+      G    I
Sbjct: 92  YQLEFLDKVPAHAILNEAVEIAKVKGNPGTGKFVNGVLRNYQRQGAPDLQGITDPI 147


>gi|257899950|ref|ZP_05679603.1| rRNA SAM-dependent methyltransferase [Enterococcus faecium Com15]
 gi|257837862|gb|EEV62936.1| rRNA SAM-dependent methyltransferase [Enterococcus faecium Com15]
          Length = 452

 Score = 75.5 bits (185), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 25/116 (21%), Positives = 47/116 (40%), Gaps = 3/116 (2%)

Query: 53  TELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGV 112
            E+  +S     D+  F  +I+G +  ++ ++  ++  + +       D +  ++L   V
Sbjct: 35  NEMIKQSELNQKDVGLFTELIYGTISHQRLLEFYVAPLIAKAKKVD--DWV-KTLLYLSV 91

Query: 113 LELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRSGCVSAI 168
            +L     VP   I++E V IA         KF+N VL    R+      G    I
Sbjct: 92  YQLEFLDKVPAHAILNEAVEIAKVKGNPGTGKFVNGVLRNYQRQGAPDLQGIADPI 147


>gi|21282829|ref|NP_645917.1| hypothetical protein MW1100 [Staphylococcus aureus subsp. aureus
           MW2]
 gi|49486056|ref|YP_043277.1| hypothetical protein SAS1151 [Staphylococcus aureus subsp. aureus
           MSSA476]
 gi|297208139|ref|ZP_06924570.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
           aureus subsp. aureus ATCC 51811]
 gi|300912219|ref|ZP_07129662.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
           aureus subsp. aureus TCH70]
 gi|21204268|dbj|BAB94965.1| MW1100 [Staphylococcus aureus subsp. aureus MW2]
 gi|49244499|emb|CAG42928.1| hypothetical protein SAS1151 [Staphylococcus aureus subsp. aureus
           MSSA476]
 gi|296887382|gb|EFH26284.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
           aureus subsp. aureus ATCC 51811]
 gi|300886465|gb|EFK81667.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
           aureus subsp. aureus TCH70]
          Length = 435

 Score = 75.5 bits (185), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 25/123 (20%), Positives = 50/123 (40%), Gaps = 6/123 (4%)

Query: 35  CSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEK 94
            +  +I++E   Y      E+  E+    +D   F  I++G + RK  +D  +   +  K
Sbjct: 11  DTIQDILNE-GAYSNLRINEVLSENELNAMDKALFTEIVYGTVKRKFTLDFYLKPFVKTK 69

Query: 95  WSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVS 154
                +   +  +L   + + +    VP   II+E V IA +         +N +L  + 
Sbjct: 70  -----IKAWVRQLLWMSIYQYVYLDKVPNHAIINEAVEIAKERGGYHNGNVVNGILRTMM 124

Query: 155 RKE 157
           R +
Sbjct: 125 RSD 127


>gi|283470429|emb|CAQ49640.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
           aureus subsp. aureus ST398]
          Length = 435

 Score = 75.5 bits (185), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 25/123 (20%), Positives = 50/123 (40%), Gaps = 6/123 (4%)

Query: 35  CSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEK 94
            +  +I++E   Y      E+  E+    +D   F  I++G + RK  +D  +   +  K
Sbjct: 11  DTIQDILNE-GAYSNLRINEVLSENELNAMDKALFTEIVYGTVKRKYTLDFYLKPFVKTK 69

Query: 95  WSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVS 154
                +   +  +L   + + +    VP   II+E V IA +         +N +L  + 
Sbjct: 70  -----IKAWVRQLLWMSIYQYVYLDKVPNHAIINEAVEIAKERGGYHNGNVVNGILRTMM 124

Query: 155 RKE 157
           R +
Sbjct: 125 RSD 127


>gi|258423740|ref|ZP_05686626.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
           aureus A9635]
 gi|257845972|gb|EEV70000.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
           aureus A9635]
          Length = 435

 Score = 75.5 bits (185), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 25/123 (20%), Positives = 50/123 (40%), Gaps = 6/123 (4%)

Query: 35  CSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEK 94
            +  +I++E   Y      E+  E+    +D   F  I++G + RK  +D  +   +  K
Sbjct: 11  DTIQDILNE-GAYSNLRINEVLSENELNAMDKALFTEIVYGTVKRKYTLDFYLKPFVKTK 69

Query: 95  WSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVS 154
                +   +  +L   + + +    VP   II+E V IA +         +N +L  + 
Sbjct: 70  -----IKAWVRQLLWMSIYQYVYLDKVPNHAIINEAVEIAKERGGYHNGNVVNGILRTMM 124

Query: 155 RKE 157
           R +
Sbjct: 125 RSD 127


>gi|295407155|ref|ZP_06816956.1| LOW QUALITY PROTEIN: ribosomal RNA small subunit methyltransferase
           B [Staphylococcus aureus A8819]
 gi|294968008|gb|EFG44036.1| LOW QUALITY PROTEIN: ribosomal RNA small subunit methyltransferase
           B [Staphylococcus aureus A8819]
          Length = 428

 Score = 75.5 bits (185), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 25/123 (20%), Positives = 50/123 (40%), Gaps = 6/123 (4%)

Query: 35  CSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEK 94
            +  +I++E   Y      E+  E+    +D   F  I++G + RK  +D  +   +  K
Sbjct: 11  DTIQDILNE-GAYSNLRINEVLSENELNAMDKALFTEIVYGTVKRKYTLDFYLKPFVKTK 69

Query: 95  WSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVS 154
                +   +  +L   + + +    VP   II+E V IA +         +N +L  + 
Sbjct: 70  -----IKAWVRQLLWMSIYQYVYLDKVPNHAIINEAVEIAKERGGYHNGNVVNGILRTMM 124

Query: 155 RKE 157
           R +
Sbjct: 125 RSD 127


>gi|116071798|ref|ZP_01469066.1| transcription antitermination protein NusB [Synechococcus sp.
           BL107]
 gi|116065421|gb|EAU71179.1| transcription antitermination protein NusB [Synechococcus sp.
           BL107]
          Length = 202

 Score = 75.5 bits (185), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 22/78 (28%), Positives = 38/78 (48%), Gaps = 2/78 (2%)

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
           V+ +++ ID  +   + E W  +RL  I   ILR  V++L +    P  V  +E V +A+
Sbjct: 118 VIRQRESIDARLDQVM-EGWRLARLPRIDRDILRLVVVDL-QTMGTPAPVAFNEAVELAN 175

Query: 136 DFFYGDEPKFINAVLDKV 153
            +      + IN VL + 
Sbjct: 176 RYSDEQGRRMINGVLRRF 193


>gi|160880621|ref|YP_001559589.1| sun protein [Clostridium phytofermentans ISDg]
 gi|160429287|gb|ABX42850.1| sun protein [Clostridium phytofermentans ISDg]
          Length = 453

 Score = 75.5 bits (185), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 18/112 (16%), Positives = 43/112 (38%), Gaps = 2/112 (1%)

Query: 59  SVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIEC 118
                 D  +   +  GV+++K  +D  +      K    ++  ++ ++LR    ++   
Sbjct: 33  KDLSKQDRAFISRLCLGVLEQKLRLDYDLERF--SKIKVKKMKPVIRNVLRIAAYQIEFM 90

Query: 119 HSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRSGCVSAITQ 170
             +P      E V +      G    F+N +L  +SR+ +      +S + +
Sbjct: 91  EQIPDSAACDEAVKLVKKRGLGGLSGFVNGILRNLSREFQKANGFDISKLNE 142


>gi|82750821|ref|YP_416562.1| RNA-binding protein [Staphylococcus aureus RF122]
 gi|82656352|emb|CAI80770.1| probable RNA-binding protein [Staphylococcus aureus RF122]
          Length = 435

 Score = 75.5 bits (185), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 25/123 (20%), Positives = 50/123 (40%), Gaps = 6/123 (4%)

Query: 35  CSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEK 94
            +  +I++E   Y      E+  E+    +D   F  I++G + RK  +D  +   +  K
Sbjct: 11  DTIQDILNE-GAYSNLRINEVLSENELNAMDKALFTEIVYGTVKRKYTLDFYLKPFVKTK 69

Query: 95  WSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVS 154
                +   +  +L   + + +    VP   II+E V IA +         +N +L  + 
Sbjct: 70  -----IKAWVRQLLWMSIYQYVYLDKVPNHAIINEAVEIAKERGGYHNGNVVNGILRTMM 124

Query: 155 RKE 157
           R +
Sbjct: 125 RSD 127


>gi|68536089|ref|YP_250794.1| putative tRNA and rRNA cytosine-C5-methylase [Corynebacterium
           jeikeium K411]
 gi|68263688|emb|CAI37176.1| putative tRNA and rRNA cytosine-C5-methylase [Corynebacterium
           jeikeium K411]
          Length = 506

 Score = 75.5 bits (185), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 19/100 (19%), Positives = 40/100 (40%), Gaps = 3/100 (3%)

Query: 58  ESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIE 117
           E+     D  +   + +G +  +  +D +I           ++D +    LR G  +++ 
Sbjct: 73  EAGIKGRDAAFATELTYGTLRARGLLDAIIEDA--AGRKIEKIDSVALDALRLGAYQIL- 129

Query: 118 CHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKE 157
              V     ++  V +   F  G    F+N VL  ++RK+
Sbjct: 130 RTRVENHAAVNTSVELVKAFGAGQASGFVNGVLRALARKK 169


>gi|253731834|ref|ZP_04865999.1| rRNA (cytosine-5-)-methyltransferase [Staphylococcus aureus subsp.
           aureus USA300_TCH959]
 gi|253733545|ref|ZP_04867710.1| rRNA (cytosine-5-)-methyltransferase [Staphylococcus aureus subsp.
           aureus TCH130]
 gi|253724433|gb|EES93162.1| rRNA (cytosine-5-)-methyltransferase [Staphylococcus aureus subsp.
           aureus USA300_TCH959]
 gi|253728599|gb|EES97328.1| rRNA (cytosine-5-)-methyltransferase [Staphylococcus aureus subsp.
           aureus TCH130]
          Length = 435

 Score = 75.5 bits (185), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 25/123 (20%), Positives = 50/123 (40%), Gaps = 6/123 (4%)

Query: 35  CSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEK 94
            +  +I++E   Y      E+  E+    +D   F  I++G + RK  +D  +   +  K
Sbjct: 11  DTIQDILNE-GAYSNLRINEVLSENELNAMDKALFTEIVYGTVKRKYTLDFYLKPFVKTK 69

Query: 95  WSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVS 154
                +   +  +L   + + +    VP   II+E V IA +         +N +L  + 
Sbjct: 70  -----IKAWVRQLLWMSIYQYVYLDKVPNHAIINEAVEIAKERGGYHNGNVVNGILRTMM 124

Query: 155 RKE 157
           R +
Sbjct: 125 RSD 127


>gi|257888654|ref|ZP_05668307.1| rRNA SAM-dependent methyltransferase [Enterococcus faecium
           1,141,733]
 gi|257824708|gb|EEV51640.1| rRNA SAM-dependent methyltransferase [Enterococcus faecium
           1,141,733]
          Length = 452

 Score = 75.5 bits (185), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 25/116 (21%), Positives = 47/116 (40%), Gaps = 3/116 (2%)

Query: 53  TELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGV 112
            E+  +S     D+  F  +I+G +  ++ ++  ++  + +       D +  ++L   V
Sbjct: 35  NEMIKQSELNQKDVGLFTELIYGTISHQRLLEFYVAPLIAKAKKVD--DWV-KTLLYLSV 91

Query: 113 LELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRSGCVSAI 168
            +L     VP   I++E V IA         KF+N VL    R+      G    I
Sbjct: 92  YQLEFLDKVPAHAILNEAVEIAKVKGNPGTGKFVNGVLRNYQRQGAPDLQGIADPI 147


>gi|304381220|ref|ZP_07363873.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
           aureus subsp. aureus ATCC BAA-39]
 gi|304340203|gb|EFM06144.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
           aureus subsp. aureus ATCC BAA-39]
          Length = 435

 Score = 75.5 bits (185), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 25/123 (20%), Positives = 50/123 (40%), Gaps = 6/123 (4%)

Query: 35  CSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEK 94
            +  +I++E   Y      E+  E+    +D   F  I++G + RK  +D  +   +  K
Sbjct: 11  DTIQDILNE-GAYSNLRINEVLSENELNAMDKALFTEIVYGTVKRKYTLDFYLKPFVKTK 69

Query: 95  WSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVS 154
                +   +  +L   + + +    VP   II+E V IA +         +N +L  + 
Sbjct: 70  -----IKAWVRQLLWMSIYQYVYLDKVPNHAIINEAVEIAKERGGYHNGNVVNGILRTMM 124

Query: 155 RKE 157
           R +
Sbjct: 125 RSD 127


>gi|302332821|gb|ADL23014.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
           aureus subsp. aureus JKD6159]
          Length = 435

 Score = 75.5 bits (185), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 25/123 (20%), Positives = 50/123 (40%), Gaps = 6/123 (4%)

Query: 35  CSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEK 94
            +  +I++E   Y      E+  E+    +D   F  I++G + RK  +D  +   +  K
Sbjct: 11  DTIQDILNE-GAYSNLRINEVLSENELNAMDKALFTEIVYGTVKRKYTLDFYLKPFVKTK 69

Query: 95  WSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVS 154
                +   +  +L   + + +    VP   II+E V IA +         +N +L  + 
Sbjct: 70  -----IKAWVRQLLWMSIYQYVYLDKVPNHAIINEAVEIAKERGGYHNGNVVNGILRTMM 124

Query: 155 RKE 157
           R +
Sbjct: 125 RSD 127


>gi|269940709|emb|CBI49090.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
           aureus subsp. aureus TW20]
          Length = 435

 Score = 75.5 bits (185), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 25/123 (20%), Positives = 50/123 (40%), Gaps = 6/123 (4%)

Query: 35  CSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEK 94
            +  +I++E   Y      E+  E+    +D   F  I++G + RK  +D  +   +  K
Sbjct: 11  DTIQDILNE-GAYSNLRINEVLSENELNAMDKALFTEIVYGTVKRKYTLDFYLKPFVKTK 69

Query: 95  WSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVS 154
                +   +  +L   + + +    VP   II+E V IA +         +N +L  + 
Sbjct: 70  -----IKAWVRQLLWMSIYQYVYLDKVPNHAIINEAVEIAKERGGYHNGNVVNGILRTMM 124

Query: 155 RKE 157
           R +
Sbjct: 125 RSD 127


>gi|167772291|ref|ZP_02444344.1| hypothetical protein ANACOL_03668 [Anaerotruncus colihominis DSM
           17241]
 gi|167665394|gb|EDS09524.1| hypothetical protein ANACOL_03668 [Anaerotruncus colihominis DSM
           17241]
          Length = 450

 Score = 75.1 bits (184), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 28/144 (19%), Positives = 52/144 (36%), Gaps = 13/144 (9%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           +  AR  A QAL +++  G  +   I            E             +   + + 
Sbjct: 26  KKDARYTAAQALLRMESAGAYSNLTIDSLIEKNGLDAREG-----------AFAAALFYT 74

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
           V++R+  ID ++++        + L   +   LR GV +L+    V     +SE V +  
Sbjct: 75  VLERRLTIDHVLAAYCARG--LASLSKPVLQTLRLGVCQLVWMDGVDDYAAVSESVNLTR 132

Query: 136 DFFYGDEPKFINAVLDKVSRKEEI 159
                    F+N VL    R ++ 
Sbjct: 133 ALGCAKASGFVNGVLRAFLRADKA 156


>gi|57651786|ref|YP_186092.1| sun protein [Staphylococcus aureus subsp. aureus COL]
 gi|148267708|ref|YP_001246651.1| sun protein [Staphylococcus aureus subsp. aureus JH9]
 gi|150393766|ref|YP_001316441.1| sun protein [Staphylococcus aureus subsp. aureus JH1]
 gi|151221339|ref|YP_001332161.1| hypothetical protein NWMN_1127 [Staphylococcus aureus subsp. aureus
           str. Newman]
 gi|161509389|ref|YP_001575048.1| rRNA (cytosine-5-)-methyltransferase [Staphylococcus aureus subsp.
           aureus USA300_TCH1516]
 gi|221142007|ref|ZP_03566500.1| rRNA (cytosine-5-)-methyltransferase [Staphylococcus aureus subsp.
           aureus str. JKD6009]
 gi|253315575|ref|ZP_04838788.1| rRNA (cytosine-5-)-methyltransferase [Staphylococcus aureus subsp.
           aureus str. CF-Marseille]
 gi|255006004|ref|ZP_05144605.2| rRNA (cytosine-5-)-methyltransferase [Staphylococcus aureus subsp.
           aureus Mu50-omega]
 gi|257795727|ref|ZP_05644706.1| ribosomal small subunit methyltransferase B [Staphylococcus aureus
           A9781]
 gi|258415951|ref|ZP_05682221.1| RNA-binding Sun protein [Staphylococcus aureus A9763]
 gi|258419698|ref|ZP_05682665.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
           aureus A9719]
 gi|258438740|ref|ZP_05689893.1| ribosomal RNA small subunit methyltransferase [Staphylococcus
           aureus A9299]
 gi|258444554|ref|ZP_05692883.1| ribosomal RNA small subunit methyltransferase [Staphylococcus
           aureus A8115]
 gi|258447613|ref|ZP_05695757.1| RNA-binding Sun protein [Staphylococcus aureus A6300]
 gi|258449455|ref|ZP_05697558.1| RNA-binding Sun protein [Staphylococcus aureus A6224]
 gi|258452514|ref|ZP_05700520.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
           aureus A5948]
 gi|258454834|ref|ZP_05702798.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
           aureus A5937]
 gi|269202832|ref|YP_003282101.1| sun protein [Staphylococcus aureus subsp. aureus ED98]
 gi|282892703|ref|ZP_06300938.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
           aureus A8117]
 gi|282919999|ref|ZP_06327728.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
           aureus A9765]
 gi|282927557|ref|ZP_06335173.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
           aureus A10102]
 gi|284024141|ref|ZP_06378539.1| sun protein [Staphylococcus aureus subsp. aureus 132]
 gi|294848210|ref|ZP_06788957.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
           aureus A9754]
 gi|296275238|ref|ZP_06857745.1| sun protein [Staphylococcus aureus subsp. aureus MR1]
 gi|297245959|ref|ZP_06929818.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
           aureus A8796]
 gi|57285972|gb|AAW38066.1| sun protein [Staphylococcus aureus subsp. aureus COL]
 gi|147740777|gb|ABQ49075.1| sun protein [Staphylococcus aureus subsp. aureus JH9]
 gi|149946218|gb|ABR52154.1| sun protein [Staphylococcus aureus subsp. aureus JH1]
 gi|150374139|dbj|BAF67399.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           str. Newman]
 gi|160368198|gb|ABX29169.1| rRNA (cytosine-5-)-methyltransferase [Staphylococcus aureus subsp.
           aureus USA300_TCH1516]
 gi|257789699|gb|EEV28039.1| ribosomal small subunit methyltransferase B [Staphylococcus aureus
           A9781]
 gi|257839287|gb|EEV63761.1| RNA-binding Sun protein [Staphylococcus aureus A9763]
 gi|257844283|gb|EEV68665.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
           aureus A9719]
 gi|257847999|gb|EEV71992.1| ribosomal RNA small subunit methyltransferase [Staphylococcus
           aureus A9299]
 gi|257850047|gb|EEV74000.1| ribosomal RNA small subunit methyltransferase [Staphylococcus
           aureus A8115]
 gi|257853804|gb|EEV76763.1| RNA-binding Sun protein [Staphylococcus aureus A6300]
 gi|257857443|gb|EEV80341.1| RNA-binding Sun protein [Staphylococcus aureus A6224]
 gi|257859732|gb|EEV82574.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
           aureus A5948]
 gi|257863217|gb|EEV85981.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
           aureus A5937]
 gi|262075122|gb|ACY11095.1| sun protein [Staphylococcus aureus subsp. aureus ED98]
 gi|282590560|gb|EFB95637.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
           aureus A10102]
 gi|282594715|gb|EFB99699.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
           aureus A9765]
 gi|282764700|gb|EFC04825.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
           aureus A8117]
 gi|294825010|gb|EFG41432.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
           aureus A9754]
 gi|297177123|gb|EFH36377.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
           aureus A8796]
 gi|302751040|gb|ADL65217.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
           aureus subsp. aureus str. JKD6008]
 gi|312829611|emb|CBX34453.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
           aureus subsp. aureus ECT-R 2]
 gi|315131008|gb|EFT86992.1| rRNA (cytosine-5-)-methyltransferase [Staphylococcus aureus subsp.
           aureus CGS03]
 gi|315198454|gb|EFU28783.1| rRNA (cytosine-5-)-methyltransferase [Staphylococcus aureus subsp.
           aureus CGS01]
 gi|320140968|gb|EFW32815.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
           aureus subsp. aureus MRSA131]
 gi|320144317|gb|EFW36083.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
           aureus subsp. aureus MRSA177]
 gi|329313886|gb|AEB88299.1| SA1060 protein [Staphylococcus aureus subsp. aureus T0131]
 gi|329727100|gb|EGG63556.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
           aureus subsp. aureus 21172]
          Length = 435

 Score = 75.1 bits (184), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 25/123 (20%), Positives = 50/123 (40%), Gaps = 6/123 (4%)

Query: 35  CSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEK 94
            +  +I++E   Y      E+  E+    +D   F  I++G + RK  +D  +   +  K
Sbjct: 11  DTIQDILNE-GAYSNLRINEVLSENELNAMDKALFTEIVYGTVKRKYTLDFYLKPFVKTK 69

Query: 95  WSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVS 154
                +   +  +L   + + +    VP   II+E V IA +         +N +L  + 
Sbjct: 70  -----IKAWVRQLLWMSIYQYVYLDKVPNHAIINEAVEIAKERGGYHNGNVVNGILRTMM 124

Query: 155 RKE 157
           R +
Sbjct: 125 RSD 127


>gi|291543913|emb|CBL17022.1| ribosomal RNA small subunit methyltransferase RsmB [Ruminococcus
           sp. 18P13]
          Length = 434

 Score = 75.1 bits (184), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 22/88 (25%), Positives = 40/88 (45%), Gaps = 3/88 (3%)

Query: 71  VIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEY 130
            + +GV++R   +D ++S    +     +LD  + ++LR GV +L     +P    ++E 
Sbjct: 45  ALYYGVIERLPELDYVLSRYSKK--PPEKLDPTVRNLLRCGVYQLAHMR-IPDNAAVNEC 101

Query: 131 VCIAHDFFYGDEPKFINAVLDKVSRKEE 158
           V       Y     F+NAVL    R  +
Sbjct: 102 VNACKKLRYTSASGFVNAVLRGFVRDGK 129


>gi|87161915|ref|YP_493807.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
           aureus subsp. aureus USA300_FPR3757]
 gi|87127889|gb|ABD22403.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
           aureus subsp. aureus USA300_FPR3757]
          Length = 435

 Score = 75.1 bits (184), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 25/123 (20%), Positives = 50/123 (40%), Gaps = 6/123 (4%)

Query: 35  CSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEK 94
            +  +I++E   Y      E+  E+    +D   F  I++G + RK  +D  +   +  K
Sbjct: 11  DTIQDILNE-GAYSNLRINEVLSENELNAMDKALFTEIVYGTVKRKYTLDFYLKPFVKTK 69

Query: 95  WSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVS 154
                +   +  +L   + + +    VP   II+E V IA +         +N +L  + 
Sbjct: 70  -----IKAWVRQLLWMSIYQYVYLDKVPNHAIINEAVEIAKERGGYHNGNVVNGILRTMM 124

Query: 155 RKE 157
           R +
Sbjct: 125 RSD 127


>gi|260437316|ref|ZP_05791132.1| ribosomal RNA small subunit methyltransferase B [Butyrivibrio
           crossotus DSM 2876]
 gi|292810228|gb|EFF69433.1| ribosomal RNA small subunit methyltransferase B [Butyrivibrio
           crossotus DSM 2876]
          Length = 443

 Score = 75.1 bits (184), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 28/125 (22%), Positives = 54/125 (43%), Gaps = 5/125 (4%)

Query: 37  TTEIISEYETYRFCADTELDVESVY---LHVDLEWFRVIIHGVMDRKQHIDLLISSCLTE 93
              +I   E  RF      +V   Y    ++D  +    I G ++RK  +D +I   L  
Sbjct: 12  LDALIEINEKDRFTHIVLPEVLKKYQYLDNIDRSFISRTILGTVERKITLDYII--NLFS 69

Query: 94  KWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKV 153
           K   +++  ++ +ILR    +LI    V    + +E V ++    +     F+N VL  +
Sbjct: 70  KTPVNKMKPVIRNILRMSTYQLIYMEGVKDFAVCNEAVRLSVKKGFTALKGFVNGVLRTI 129

Query: 154 SRKEE 158
           +R++ 
Sbjct: 130 AREKN 134


>gi|69245428|ref|ZP_00603423.1| Fmu, rRNA SAM-dependent methyltransferase [Enterococcus faecium DO]
 gi|257879839|ref|ZP_05659492.1| rRNA SAM-dependent methyltransferase [Enterococcus faecium
           1,230,933]
 gi|257891680|ref|ZP_05671333.1| rRNA SAM-dependent methyltransferase [Enterococcus faecium
           1,231,410]
 gi|257894155|ref|ZP_05673808.1| rRNA SAM-dependent methyltransferase [Enterococcus faecium
           1,231,408]
 gi|258614266|ref|ZP_05712036.1| Sun protein [Enterococcus faecium DO]
 gi|260559512|ref|ZP_05831693.1| fmu [Enterococcus faecium C68]
 gi|293563686|ref|ZP_06678127.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
           faecium E1162]
 gi|293570098|ref|ZP_06681178.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
           faecium E1071]
 gi|314938230|ref|ZP_07845530.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
           faecium TX0133a04]
 gi|314943127|ref|ZP_07849925.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
           faecium TX0133C]
 gi|314949324|ref|ZP_07852666.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
           faecium TX0082]
 gi|314952258|ref|ZP_07855272.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
           faecium TX0133A]
 gi|314992114|ref|ZP_07857564.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
           faecium TX0133B]
 gi|314996296|ref|ZP_07861352.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
           faecium TX0133a01]
 gi|68195810|gb|EAN10246.1| Fmu, rRNA SAM-dependent methyltransferase [Enterococcus faecium DO]
 gi|257814067|gb|EEV42825.1| rRNA SAM-dependent methyltransferase [Enterococcus faecium
           1,230,933]
 gi|257828040|gb|EEV54666.1| rRNA SAM-dependent methyltransferase [Enterococcus faecium
           1,231,410]
 gi|257830534|gb|EEV57141.1| rRNA SAM-dependent methyltransferase [Enterococcus faecium
           1,231,408]
 gi|260074611|gb|EEW62932.1| fmu [Enterococcus faecium C68]
 gi|291587470|gb|EFF19354.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
           faecium E1071]
 gi|291604370|gb|EFF33863.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
           faecium E1162]
 gi|313589540|gb|EFR68385.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
           faecium TX0133a01]
 gi|313593328|gb|EFR72173.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
           faecium TX0133B]
 gi|313595600|gb|EFR74445.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
           faecium TX0133A]
 gi|313598135|gb|EFR76980.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
           faecium TX0133C]
 gi|313642426|gb|EFS07006.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
           faecium TX0133a04]
 gi|313644273|gb|EFS08853.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
           faecium TX0082]
          Length = 452

 Score = 75.1 bits (184), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 25/116 (21%), Positives = 47/116 (40%), Gaps = 3/116 (2%)

Query: 53  TELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGV 112
            E+  +S     D+  F  +I+G +  ++ ++  ++  + +       D +  ++L   V
Sbjct: 35  NEMIKQSELNQKDVGLFTELIYGTISHQRLLEFYVAPLIAKAKKVD--DWV-KTLLYLSV 91

Query: 113 LELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRSGCVSAI 168
            +L     VP   I++E V IA         KF+N VL    R+      G    I
Sbjct: 92  YQLEFLDKVPAHAILNEAVEIAKVKGNPGTGKFVNGVLRNYQRQGAPDLQGIADPI 147


>gi|269302790|gb|ACZ32890.1| transcription antitermination factor NusB [Chlamydophila pneumoniae
           LPCoLN]
          Length = 160

 Score = 75.1 bits (184), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 26/143 (18%), Positives = 61/143 (42%), Gaps = 12/143 (8%)

Query: 20  RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79
           R   +Q LY +D+   +   ++    +    +   + V                  ++++
Sbjct: 26  REIILQMLYALDMAPSAEDSLVPLLMSQTAVSQKHVLVALNQTKS-----------ILEK 74

Query: 80  KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139
            Q +DL+I + L +  SF  LD++  ++LR  + E      +   ++I+E + +   F Y
Sbjct: 75  SQELDLIIGNAL-KNKSFDSLDLVEKNVLRLTLFEHFYSPPINKAILIAEAIRLVKKFSY 133

Query: 140 GDEPKFINAVLDKVSRKEEIKRS 162
            +   FI+A+L+ +     +  +
Sbjct: 134 SEACPFIHAILNDIFTDSSLNEN 156


>gi|229031495|ref|ZP_04187495.1| Ribosomal RNA small subunit methyltransferase B [Bacillus cereus
           AH1271]
 gi|228729784|gb|EEL80764.1| Ribosomal RNA small subunit methyltransferase B [Bacillus cereus
           AH1271]
          Length = 402

 Score = 75.1 bits (184), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 20/88 (22%), Positives = 38/88 (43%), Gaps = 5/88 (5%)

Query: 69  FRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIIS 128
              I++G + R+  +D  +   L +K     ++  +  +LR  + ++I    VP    I 
Sbjct: 2   LTEIVYGTIQRRDTLDYYLQPFLKKK-----VEAWVRVLLRLSLYQMIYLDRVPERAAIH 56

Query: 129 EYVCIAHDFFYGDEPKFINAVLDKVSRK 156
           E V IA    +      +N VL  + R+
Sbjct: 57  EAVEIAKRRGHKGIAGMVNGVLRSIQRE 84


>gi|257438997|ref|ZP_05614752.1| ribosomal RNA small subunit methyltransferase B [Faecalibacterium
           prausnitzii A2-165]
 gi|257198582|gb|EEU96866.1| ribosomal RNA small subunit methyltransferase B [Faecalibacterium
           prausnitzii A2-165]
          Length = 440

 Score = 75.1 bits (184), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 23/88 (26%), Positives = 40/88 (45%), Gaps = 3/88 (3%)

Query: 65  DLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVE 124
           D  +   I + V++ +  +D ++   L +    +RLD  +  ILRA + +      VPV 
Sbjct: 39  DKAFAGAIFYTVLEHQGTLDFILEQFLPKG--LARLDPQVREILRAALAQARYMQ-VPVS 95

Query: 125 VIISEYVCIAHDFFYGDEPKFINAVLDK 152
             ++E V +   F        +NAVL K
Sbjct: 96  AAVNEAVKLTRTFKKASASGLVNAVLRK 123


>gi|312143910|ref|YP_003995356.1| sun protein [Halanaerobium sp. 'sapolanicus']
 gi|311904561|gb|ADQ15002.1| sun protein [Halanaerobium sp. 'sapolanicus']
          Length = 444

 Score = 75.1 bits (184), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 24/102 (23%), Positives = 42/102 (41%), Gaps = 3/102 (2%)

Query: 58  ESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIE 117
           + +    D   F  I +GV+  K ++D +I        S  ++D  +   LR G+ +L+ 
Sbjct: 30  QEITDQRDKNLFTEIFYGVIRNKLYLDHIIKHF--SNKSLEKMDKEVLLGLRIGIYQLLF 87

Query: 118 CHSVPVEVIISEYVCIAHDFFYGDE-PKFINAVLDKVSRKEE 158
              +P    I E V              F+N +L  V+RK +
Sbjct: 88  LDKIPARAAIYESVEAVKLMLKNKGAAAFVNGILRNVNRKID 129


>gi|294618612|ref|ZP_06698151.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
           faecium E1679]
 gi|291595131|gb|EFF26469.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
           faecium E1679]
          Length = 445

 Score = 75.1 bits (184), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 25/116 (21%), Positives = 47/116 (40%), Gaps = 3/116 (2%)

Query: 53  TELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGV 112
            E+  +S     D+  F  +I+G +  ++ ++  ++  + +       D +  ++L   V
Sbjct: 28  NEMIKQSELNQKDVGLFTELIYGTISHQRLLEFYVAPLIAKAKKVD--DWV-KTLLYLSV 84

Query: 113 LELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRSGCVSAI 168
            +L     VP   I++E V IA         KF+N VL    R+      G    I
Sbjct: 85  YQLEFLDKVPAHAILNEAVEIAKVKGNPGTGKFVNGVLRNYQRQGAPDLQGIADPI 140


>gi|261206663|ref|ZP_05921361.1| fmu [Enterococcus faecium TC 6]
 gi|289565024|ref|ZP_06445478.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
           faecium D344SRF]
 gi|294614916|ref|ZP_06694807.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
           faecium E1636]
 gi|260079156|gb|EEW66849.1| fmu [Enterococcus faecium TC 6]
 gi|289163231|gb|EFD11077.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
           faecium D344SRF]
 gi|291592202|gb|EFF23820.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
           faecium E1636]
          Length = 452

 Score = 75.1 bits (184), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 25/116 (21%), Positives = 47/116 (40%), Gaps = 3/116 (2%)

Query: 53  TELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGV 112
            E+  +S     D+  F  +I+G +  ++ ++  ++  + +       D +  ++L   V
Sbjct: 35  NEMIKQSELNQKDVGLFTELIYGTISHQRLLEFYVAPLIAKAKKVD--DWV-KTLLYLSV 91

Query: 113 LELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRSGCVSAI 168
            +L     VP   I++E V IA         KF+N VL    R+      G    I
Sbjct: 92  YQLEFLDKVPAHAILNEAVEIAKVKGNPGTGKFVNGVLRNYQRQGAPDLQGIADPI 147


>gi|88194923|ref|YP_499723.1| sun protein [Staphylococcus aureus subsp. aureus NCTC 8325]
 gi|87202481|gb|ABD30291.1| sun protein [Staphylococcus aureus subsp. aureus NCTC 8325]
 gi|329724759|gb|EGG61264.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
           aureus subsp. aureus 21189]
          Length = 435

 Score = 75.1 bits (184), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 25/123 (20%), Positives = 50/123 (40%), Gaps = 6/123 (4%)

Query: 35  CSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEK 94
            +  +I++E   Y      E+  E+    +D   F  I++G + RK  +D  +   +  K
Sbjct: 11  DTIQDILNE-GAYSNLRINEVLSENELNAMDKALFTEIVYGTVKRKYTLDFYLKPFVKTK 69

Query: 95  WSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVS 154
                +   +  +L   + + +    VP   II+E V IA +         +N +L  + 
Sbjct: 70  -----IKAWVRQLLWMSIYQYVYLDKVPNHAIINEAVEIAKERGGYHNGNVVNGILRTMM 124

Query: 155 RKE 157
           R +
Sbjct: 125 RSD 127


>gi|116622296|ref|YP_824452.1| NusB/RsmB/TIM44 [Candidatus Solibacter usitatus Ellin6076]
 gi|116225458|gb|ABJ84167.1| NusB/RsmB/TIM44 [Candidatus Solibacter usitatus Ellin6076]
          Length = 360

 Score = 75.1 bits (184), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 29/139 (20%), Positives = 50/139 (35%), Gaps = 17/139 (12%)

Query: 18  IARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVM 77
            AR+AA               +I+   E+  + +D  L   +     D      I+ GV+
Sbjct: 5   AARIAAF--------------DILQLVESGGYASDLLLARTADLDSRDAGLASEIVFGVL 50

Query: 78  DRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDF 137
             +  +D LI            LD  + + LR  + ++     VP    + E V +    
Sbjct: 51  RYRAQLDFLIIHYAGRSRK---LDPEVRTALRMAIYQIRYLERVPPHAAVKESVELVKRA 107

Query: 138 FYGDEPKFINAVLDKVSRK 156
                  F+NA+L +V R 
Sbjct: 108 RKTSAAGFVNAILRQVDRD 126


>gi|293553676|ref|ZP_06674300.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
           faecium E1039]
 gi|291602251|gb|EFF32479.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
           faecium E1039]
          Length = 452

 Score = 75.1 bits (184), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 25/116 (21%), Positives = 47/116 (40%), Gaps = 3/116 (2%)

Query: 53  TELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGV 112
            E+  +S     D+  F  +I+G +  ++ ++  ++  + +       D +  ++L   V
Sbjct: 35  NEMIKQSELNQKDVGLFTELIYGTISHQRLLEFYVAPLIAKAKKVD--DWV-KTLLYLSV 91

Query: 113 LELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRSGCVSAI 168
            +L     VP   I++E V IA         KF+N VL    R+      G    I
Sbjct: 92  YQLEFLDKVPAHAILNEAVEIAKVKGNPGTGKFVNGVLRNYQRQGAPDLQGIADPI 147


>gi|312876959|ref|ZP_07736934.1| sun protein [Caldicellulosiruptor lactoaceticus 6A]
 gi|311796274|gb|EFR12628.1| sun protein [Caldicellulosiruptor lactoaceticus 6A]
          Length = 406

 Score = 75.1 bits (184), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 29/110 (26%), Positives = 46/110 (41%), Gaps = 6/110 (5%)

Query: 54  ELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVL 113
           E   + +    D   F  ++HGV+  K  ID  I+    +     R+     +ILR    
Sbjct: 2   EKFHQKLKNEKDRALFVELVHGVLRYKNLIDYYINFVAKKGVKDRRI----LNILRVATY 57

Query: 114 ELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSR-KEEIKRS 162
           EL+    +P    +SE   IA          F+NA+L  + R K +I+ S
Sbjct: 58  ELLFLEKIPEYATVSEACEIASKIS-PHLKAFVNAILRNIIRNKNQIEES 106


>gi|229013049|ref|ZP_04170214.1| Ribosomal RNA small subunit methyltransferase B [Bacillus mycoides
           DSM 2048]
 gi|228748303|gb|EEL98163.1| Ribosomal RNA small subunit methyltransferase B [Bacillus mycoides
           DSM 2048]
          Length = 415

 Score = 75.1 bits (184), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 19/100 (19%), Positives = 42/100 (42%), Gaps = 5/100 (5%)

Query: 57  VESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELI 116
            ++     D+     +++G + R+  +D  +   L +K     ++  +  +LR  + +++
Sbjct: 3   EKNTIDRKDIGLLTEMVYGTIQRRDTLDYYLQPFLRKK-----VEAWVRVLLRLSLYQML 57

Query: 117 ECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRK 156
               VP    I E V IA    +      +N VL  + R+
Sbjct: 58  YLDRVPERAAIHEAVEIAKRRGHKGISGMVNGVLRSIQRE 97


>gi|229061468|ref|ZP_04198813.1| Ribosomal RNA small subunit methyltransferase B [Bacillus cereus
           AH603]
 gi|229134673|ref|ZP_04263482.1| Ribosomal RNA small subunit methyltransferase B [Bacillus cereus
           BDRD-ST196]
 gi|229168605|ref|ZP_04296328.1| Ribosomal RNA small subunit methyltransferase B [Bacillus cereus
           AH621]
 gi|228615011|gb|EEK72113.1| Ribosomal RNA small subunit methyltransferase B [Bacillus cereus
           AH621]
 gi|228648719|gb|EEL04745.1| Ribosomal RNA small subunit methyltransferase B [Bacillus cereus
           BDRD-ST196]
 gi|228717891|gb|EEL69539.1| Ribosomal RNA small subunit methyltransferase B [Bacillus cereus
           AH603]
          Length = 415

 Score = 75.1 bits (184), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 19/100 (19%), Positives = 42/100 (42%), Gaps = 5/100 (5%)

Query: 57  VESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELI 116
            ++     D+     +++G + R+  +D  +   L +K     ++  +  +LR  + +++
Sbjct: 3   EKNTIDRKDIGLLTEMVYGTIQRRDTLDYYLQPFLRKK-----VEAWVRVLLRLSLYQML 57

Query: 117 ECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRK 156
               VP    I E V IA    +      +N VL  + R+
Sbjct: 58  YLDRVPERAAIHEAVEIAKRRGHKGISGMVNGVLRSIQRE 97


>gi|225018695|ref|ZP_03707887.1| hypothetical protein CLOSTMETH_02645 [Clostridium methylpentosum
           DSM 5476]
 gi|224948423|gb|EEG29632.1| hypothetical protein CLOSTMETH_02645 [Clostridium methylpentosum
           DSM 5476]
          Length = 441

 Score = 75.1 bits (184), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 30/142 (21%), Positives = 57/142 (40%), Gaps = 14/142 (9%)

Query: 17  GIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGV 76
             AR  A+ AL ++D  G            Y   A   +   S     D ++   + +GV
Sbjct: 4   RTARDLALSALLKMDKQG-----------AYSNLAFDGMLSSSSLSPRDRDFAAKLFYGV 52

Query: 77  MDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHD 136
           ++ K  +D +I+S  T K    ++   + +ILR G+ ++     +     ++E V +   
Sbjct: 53  LETKITLDYIIASYATMK--PEKISSDVRNILRLGLYQIKY-LDLEDFAAVNESVNLVKL 109

Query: 137 FFYGDEPKFINAVLDKVSRKEE 158
                   F+NA+L    R  +
Sbjct: 110 RGKKSASGFVNAILRAFLRDGK 131


>gi|194688732|gb|ACF78450.1| unknown [Zea mays]
          Length = 284

 Score = 74.8 bits (183), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 30/138 (21%), Positives = 53/138 (38%), Gaps = 19/138 (13%)

Query: 34  GCSTTEIISEYETYRFCADTELDVES-----------VYLHVDLEWFRVIIHGVM----D 78
           G    E+ +E E  +  +  E D  +           VY +  L   R ++  V      
Sbjct: 136 GGGPLEVGTEEEAEKLTSQNEKDSANEADVLSAPPKLVYNNFVLRLSRELLVAVASGWDK 195

Query: 79  RKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFF 138
             + ID +I     ++   +R+  +   IL   + E+      P +V+I+E V +A  F 
Sbjct: 196 HVEIIDKIIPQAWKDE-PVARI--LELCILHIAMAEMT-SKGTPHKVVINEAVDLAKRFC 251

Query: 139 YGDEPKFINAVLDKVSRK 156
            G  P+ IN  L    + 
Sbjct: 252 DGGAPRVINGCLRTFVKD 269


>gi|295696042|ref|YP_003589280.1| sun protein [Bacillus tusciae DSM 2912]
 gi|295411644|gb|ADG06136.1| sun protein [Bacillus tusciae DSM 2912]
          Length = 486

 Score = 74.8 bits (183), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 27/171 (15%), Positives = 59/171 (34%), Gaps = 23/171 (13%)

Query: 1   MTIQDNKKDLKLSHRRGI---------ARLAAVQALYQIDIIGCSTTEIISEYETYRFCA 51
           M+      +     RR +         AR  A + L            ++ E   Y   A
Sbjct: 1   MSPDARAANPVRDPRRRVSGRAGAVSPARRGAFEVL-----------LLVEERRAYSHIA 49

Query: 52  DTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAG 111
             ++         D      I+ G +  ++ +D  I++    +   +RLD ++   LR  
Sbjct: 50  LRQVLNRLGADRRDSALATEIVQGTLRWQRWLDEQINA--KSRIPIARLDAVVRVTLRMA 107

Query: 112 VLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRS 162
           V +L +        ++++ V +           ++N VL  + R+++    
Sbjct: 108 VYQLYKLRHCAPHAVVNDAVELVKG-TQPRAASYVNGVLRALEREQQTPSP 157


>gi|160945218|ref|ZP_02092444.1| hypothetical protein FAEPRAM212_02737 [Faecalibacterium prausnitzii
           M21/2]
 gi|158442949|gb|EDP19954.1| hypothetical protein FAEPRAM212_02737 [Faecalibacterium prausnitzii
           M21/2]
          Length = 443

 Score = 74.8 bits (183), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 30/133 (22%), Positives = 54/133 (40%), Gaps = 15/133 (11%)

Query: 20  RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79
           R  AV AL + +  G S   + +E +  +                D  +   I + V++ 
Sbjct: 6   RAVAVAALVRQEQNGFSNLVLDAELKRQKLEG------------RDKAFASAIFYTVLEH 53

Query: 80  KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139
           +  +D ++   L +    ++LD  +  ILRA + +      VPV   ++E V +   F  
Sbjct: 54  RGTLDYILEQFLPKG--LAKLDAPVREILRAALAQARYMQ-VPVSAAVNEAVKLTRTFKK 110

Query: 140 GDEPKFINAVLDK 152
                 +NAVL K
Sbjct: 111 SSASGLVNAVLRK 123


>gi|89898049|ref|YP_515159.1| transcription antitermination protein NusB [Chlamydophila felis
           Fe/C-56]
 gi|89331421|dbj|BAE81014.1| N utilization protein B [Chlamydophila felis Fe/C-56]
          Length = 154

 Score = 74.8 bits (183), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 29/140 (20%), Positives = 59/140 (42%), Gaps = 12/140 (8%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           +   R   +Q LY +D+   S   ++            E  V   +    L + + I+  
Sbjct: 22  KQKMREIVLQMLYALDMDPMSEESLVPLLMA-------ETAVTQKHAFSALNFSKEIL-- 72

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
              +   +DLLI+    +  SF +L ++  ++LR  + E      +   ++I+E   +  
Sbjct: 73  --AKSPELDLLIAQT-VKNTSFEKLTLMEKNVLRLALFEHFHGQHINAAILIAEATRLVK 129

Query: 136 DFFYGDEPKFINAVLDKVSR 155
            F Y +   F++AVL+ + R
Sbjct: 130 KFSYTEACSFVHAVLNDIFR 149


>gi|330443798|ref|YP_004376784.1| hypothetical protein G5S_0047 [Chlamydophila pecorum E58]
 gi|328806908|gb|AEB41081.1| conserved hypothetical protein [Chlamydophila pecorum E58]
          Length = 154

 Score = 74.8 bits (183), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 34/140 (24%), Positives = 63/140 (45%), Gaps = 12/140 (8%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           R   R   +Q LY +   G   +    E       A+T +  + V+L   L + +     
Sbjct: 8   RQKMREIVLQMLYAL---GVDPS--AEEGLVPLLMAETAVAQKHVFLA--LRYSKQ---- 56

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
           V+++   +D LIS  +    SF  L+++  +ILR  + E +    +P  ++I+E   +  
Sbjct: 57  VLEKSSELDALISQTVKTT-SFENLNLMEKNILRLTLFEYLYGGPIPSSILIAEASRLIK 115

Query: 136 DFFYGDEPKFINAVLDKVSR 155
            F Y +   F+ AVL+ + R
Sbjct: 116 KFSYLEARAFVQAVLNDIFR 135


>gi|323440992|gb|EGA98699.1| RNA-binding protein [Staphylococcus aureus O11]
          Length = 435

 Score = 74.8 bits (183), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 25/123 (20%), Positives = 50/123 (40%), Gaps = 6/123 (4%)

Query: 35  CSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEK 94
            +  +I++E   Y      E+  E+    +D   F  I++G + RK  +D  +   +  K
Sbjct: 11  DTIQDILNE-GAYSNLRINEVLSENELNVMDKALFTEIVYGTVKRKYTLDFYLKPFVKTK 69

Query: 95  WSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVS 154
                +   +  +L   + + +    VP   II+E V IA +         +N +L  + 
Sbjct: 70  -----IKAWVRQLLWMSIYQYVYLDKVPNHAIINEAVEIAKERGGYHNGNVVNGILRTMM 124

Query: 155 RKE 157
           R +
Sbjct: 125 RSD 127


>gi|298694510|gb|ADI97732.1| probable RNA-binding protein [Staphylococcus aureus subsp. aureus
           ED133]
          Length = 435

 Score = 74.8 bits (183), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 25/123 (20%), Positives = 50/123 (40%), Gaps = 6/123 (4%)

Query: 35  CSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEK 94
            +  +I++E   Y      E+  E+    +D   F  I++G + RK  +D  +   +  K
Sbjct: 11  DTIQDILNE-GAYSNLRINEVLSENELNVMDKALFTEIVYGTVKRKYTLDFYLKPFVKTK 69

Query: 95  WSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVS 154
                +   +  +L   + + +    VP   II+E V IA +         +N +L  + 
Sbjct: 70  -----IKAWVRQLLWMSIYQYVYLDKVPNHAIINEAVEIAKERGGYHNGNVVNGILRTMM 124

Query: 155 RKE 157
           R +
Sbjct: 125 RSD 127


>gi|257425270|ref|ZP_05601695.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
           aureus subsp. aureus 55/2053]
 gi|257427930|ref|ZP_05604328.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
           aureus subsp. aureus 65-1322]
 gi|257430563|ref|ZP_05606945.1| RNA-binding Sun protein [Staphylococcus aureus subsp. aureus
           68-397]
 gi|257433324|ref|ZP_05609682.1| RNA-binding Sun protein [Staphylococcus aureus subsp. aureus E1410]
 gi|257436166|ref|ZP_05612213.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
           aureus subsp. aureus M876]
 gi|282903770|ref|ZP_06311658.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
           aureus subsp. aureus C160]
 gi|282905534|ref|ZP_06313389.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
           aureus subsp. aureus Btn1260]
 gi|282908510|ref|ZP_06316340.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
           aureus subsp. aureus WW2703/97]
 gi|282913992|ref|ZP_06321779.1| sun protein [Staphylococcus aureus subsp. aureus M899]
 gi|282918914|ref|ZP_06326649.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
           aureus subsp. aureus C427]
 gi|282924037|ref|ZP_06331713.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
           aureus subsp. aureus C101]
 gi|283957958|ref|ZP_06375409.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
           aureus subsp. aureus A017934/97]
 gi|293501025|ref|ZP_06666876.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
           aureus subsp. aureus 58-424]
 gi|293509984|ref|ZP_06668692.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
           aureus subsp. aureus M809]
 gi|293526572|ref|ZP_06671257.1| sun protein [Staphylococcus aureus subsp. aureus M1015]
 gi|297591339|ref|ZP_06949977.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
           aureus subsp. aureus MN8]
 gi|257271727|gb|EEV03865.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
           aureus subsp. aureus 55/2053]
 gi|257274771|gb|EEV06258.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
           aureus subsp. aureus 65-1322]
 gi|257278691|gb|EEV09310.1| RNA-binding Sun protein [Staphylococcus aureus subsp. aureus
           68-397]
 gi|257281417|gb|EEV11554.1| RNA-binding Sun protein [Staphylococcus aureus subsp. aureus E1410]
 gi|257284448|gb|EEV14568.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
           aureus subsp. aureus M876]
 gi|282314009|gb|EFB44401.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
           aureus subsp. aureus C101]
 gi|282316724|gb|EFB47098.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
           aureus subsp. aureus C427]
 gi|282322060|gb|EFB52384.1| sun protein [Staphylococcus aureus subsp. aureus M899]
 gi|282327572|gb|EFB57855.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
           aureus subsp. aureus WW2703/97]
 gi|282330826|gb|EFB60340.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
           aureus subsp. aureus Btn1260]
 gi|282595388|gb|EFC00352.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
           aureus subsp. aureus C160]
 gi|283790107|gb|EFC28924.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
           aureus subsp. aureus A017934/97]
 gi|290920644|gb|EFD97707.1| sun protein [Staphylococcus aureus subsp. aureus M1015]
 gi|291096030|gb|EFE26291.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
           aureus subsp. aureus 58-424]
 gi|291466928|gb|EFF09446.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
           aureus subsp. aureus M809]
 gi|297576225|gb|EFH94941.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
           aureus subsp. aureus MN8]
 gi|315194103|gb|EFU24496.1| hypothetical protein CGSSa00_05338 [Staphylococcus aureus subsp.
           aureus CGS00]
          Length = 435

 Score = 74.8 bits (183), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 25/123 (20%), Positives = 50/123 (40%), Gaps = 6/123 (4%)

Query: 35  CSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEK 94
            +  +I++E   Y      E+  E+    +D   F  I++G + RK  +D  +   +  K
Sbjct: 11  DTIQDILNE-GAYSNLRINEVLSENELNVMDKALFTEIVYGTVKRKYTLDFYLKPFVKTK 69

Query: 95  WSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVS 154
                +   +  +L   + + +    VP   II+E V IA +         +N +L  + 
Sbjct: 70  -----IKAWVRQLLWMSIYQYVYLDKVPNHAIINEAVEIAKERGGYHNGNVVNGILRTMM 124

Query: 155 RKE 157
           R +
Sbjct: 125 RSD 127


>gi|256545255|ref|ZP_05472620.1| N utilization substance protein B [Anaerococcus vaginalis ATCC
           51170]
 gi|256399082|gb|EEU12694.1| N utilization substance protein B [Anaerococcus vaginalis ATCC
           51170]
          Length = 58

 Score = 74.8 bits (183), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 22/59 (37%), Positives = 34/59 (57%), Gaps = 1/59 (1%)

Query: 100 LDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEE 158
           +  +  SIL   V E+ E   +P+ V I+E V IA ++   D  KFIN+VL K++ K +
Sbjct: 1   MAKVDRSILFLSVNEM-ENLDIPISVSINEAVNIAKEYSTSDGYKFINSVLGKIAEKRK 58


>gi|49483380|ref|YP_040604.1| hypothetical protein SAR1193 [Staphylococcus aureus subsp. aureus
           MRSA252]
 gi|295427702|ref|ZP_06820334.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
           aureus subsp. aureus EMRSA16]
 gi|49241509|emb|CAG40195.1| hypothetical protein SAR1193 [Staphylococcus aureus subsp. aureus
           MRSA252]
 gi|295128060|gb|EFG57694.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
           aureus subsp. aureus EMRSA16]
          Length = 435

 Score = 74.8 bits (183), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 25/123 (20%), Positives = 50/123 (40%), Gaps = 6/123 (4%)

Query: 35  CSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEK 94
            +  +I++E   Y      E+  E+    +D   F  I++G + RK  +D  +   +  K
Sbjct: 11  DTIQDILNE-GAYSNLRINEVLSENELNVMDKALFTEIVYGTVKRKYTLDFYLKPFVKTK 69

Query: 95  WSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVS 154
                +   +  +L   + + +    VP   II+E V IA +         +N +L  + 
Sbjct: 70  -----IKAWVRQLLWMSIYQYVYLDKVPNHAIINEAVEIAKERGGYHNGNVVNGILRTMM 124

Query: 155 RKE 157
           R +
Sbjct: 125 RSD 127


>gi|323442308|gb|EGA99938.1| RNA-binding protein [Staphylococcus aureus O46]
          Length = 435

 Score = 74.8 bits (183), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 25/123 (20%), Positives = 50/123 (40%), Gaps = 6/123 (4%)

Query: 35  CSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEK 94
            +  +I++E   Y      E+  E+    +D   F  I++G + RK  +D  +   +  K
Sbjct: 11  DTIQDILNE-GAYSNLRINEVLSENELNVMDKALFTEIVYGTVKRKYTLDFYLKPFVKTK 69

Query: 95  WSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVS 154
                +   +  +L   + + +    VP   II+E V IA +         +N +L  + 
Sbjct: 70  -----IKAWVRQLLWMSIYQYVYLDKVPNHAIINEAVEIAKERGGYHNGNVVNGILRTMM 124

Query: 155 RKE 157
           R +
Sbjct: 125 RSD 127


>gi|229174531|ref|ZP_04302063.1| Ribosomal RNA small subunit methyltransferase B [Bacillus cereus
           MM3]
 gi|228609091|gb|EEK66381.1| Ribosomal RNA small subunit methyltransferase B [Bacillus cereus
           MM3]
          Length = 402

 Score = 74.8 bits (183), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 20/88 (22%), Positives = 38/88 (43%), Gaps = 5/88 (5%)

Query: 69  FRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIIS 128
              I++G + R+  +D  +   L +K     ++  +  +LR  + ++I    VP    I 
Sbjct: 2   LTEIVYGTIQRRDTLDYYLQPFLKKK-----VEAWVRVLLRLSLYQMIYLDRVPERAAIH 56

Query: 129 EYVCIAHDFFYGDEPKFINAVLDKVSRK 156
           E V IA    +      +N VL  + R+
Sbjct: 57  EAVEIAKRRGHKGIAGMVNGVLRSIQRE 84


>gi|218290478|ref|ZP_03494598.1| sun protein [Alicyclobacillus acidocaldarius LAA1]
 gi|218239499|gb|EED06694.1| sun protein [Alicyclobacillus acidocaldarius LAA1]
          Length = 451

 Score = 74.8 bits (183), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 29/139 (20%), Positives = 54/139 (38%), Gaps = 14/139 (10%)

Query: 20  RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79
           R  A QAL +++  G      + E               +     D      I +G + R
Sbjct: 6   RRRAYQALIRVERDGAYLNVALQEALA-----------GAGVDERDRALATEIAYGTLRR 54

Query: 80  KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139
           +  +D L+S  +      S+LD  +  ILR G  ++   + VP   + ++ V +A     
Sbjct: 55  QITLDRLLSPLVRR--PMSKLDPEVRVILRMGAYQMTWLNRVPAYAVANDAVELAKRH-R 111

Query: 140 GDEPKFINAVLDKVSRKEE 158
                 +NAVL + + + +
Sbjct: 112 PQAAALVNAVLRRYAERAQ 130


>gi|312127904|ref|YP_003992778.1| sun protein [Caldicellulosiruptor hydrothermalis 108]
 gi|311777923|gb|ADQ07409.1| sun protein [Caldicellulosiruptor hydrothermalis 108]
          Length = 410

 Score = 74.8 bits (183), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 27/110 (24%), Positives = 46/110 (41%), Gaps = 6/110 (5%)

Query: 54  ELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVL 113
           E   + +    D   F  ++HGV+  K  I+  I+    +     R+     +ILR    
Sbjct: 6   EKFHQKLKNEKDRALFVELVHGVLRYKSLIEYYINFVAKKGVKDKRI----LNILRVATY 61

Query: 114 ELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSR-KEEIKRS 162
           EL+    +P    ++E   IA          F+NA+L  + R K +I+ S
Sbjct: 62  ELLFLEKIPEYATVNEACEIASKIS-PHLKAFVNAILRNIIRNKNQIEES 110


>gi|317968466|ref|ZP_07969856.1| transcription antitermination protein NusB [Synechococcus sp.
           CB0205]
          Length = 208

 Score = 74.4 bits (182), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 19/80 (23%), Positives = 37/80 (46%), Gaps = 2/80 (2%)

Query: 74  HGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCI 133
             V+  +  +D  + + + E W  +RL  I   ILR   +++ +  + P  V  +E V +
Sbjct: 124 RAVLSGRADLDQRLDAVM-EGWRLTRLPRIDRDILRLAAVDIEQF-NTPAPVACNEAVEL 181

Query: 134 AHDFFYGDEPKFINAVLDKV 153
           A+ +      + IN VL + 
Sbjct: 182 ANRYSDEQGRRMINGVLRRF 201


>gi|227552686|ref|ZP_03982735.1| RNA methyltransferase [Enterococcus faecium TX1330]
 gi|257897390|ref|ZP_05677043.1| rRNA SAM-dependent methyltransferase [Enterococcus faecium Com12]
 gi|293378850|ref|ZP_06625005.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
           faecium PC4.1]
 gi|227178181|gb|EEI59153.1| RNA methyltransferase [Enterococcus faecium TX1330]
 gi|257833955|gb|EEV60376.1| rRNA SAM-dependent methyltransferase [Enterococcus faecium Com12]
 gi|292642391|gb|EFF60546.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
           faecium PC4.1]
          Length = 452

 Score = 74.4 bits (182), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 26/116 (22%), Positives = 48/116 (41%), Gaps = 3/116 (2%)

Query: 53  TELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGV 112
            E+  +S     D+  F  +I+G +  ++ ++  ++S + +       D +  ++L   V
Sbjct: 35  NEMIKQSELNQKDVGLFTELIYGTISHQRLLEFYVASLIAKAKKVD--DWV-KTLLYLSV 91

Query: 113 LELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRSGCVSAI 168
            +L     VP   I++E V IA         KF+N VL    R+      G    I
Sbjct: 92  YQLEFLDKVPAHAILNEAVEIAKVKGNPGTGKFVNGVLRNYQRQGAPDLQGIADPI 147


>gi|229826167|ref|ZP_04452236.1| hypothetical protein GCWU000182_01539 [Abiotrophia defectiva ATCC
           49176]
 gi|229789037|gb|EEP25151.1| hypothetical protein GCWU000182_01539 [Abiotrophia defectiva ATCC
           49176]
          Length = 455

 Score = 74.4 bits (182), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 22/104 (21%), Positives = 42/104 (40%), Gaps = 2/104 (1%)

Query: 55  LDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLE 114
           LD           +   +  G +++  ++D +I+S    K    +L  I+  ++   V +
Sbjct: 30  LDNYLYLDKASRGFITRLYEGSIEKMIYLDFVINSF--SKTPVKKLKPIIKILMETAVYQ 87

Query: 115 LIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEE 158
           +     VP    I+E V +A          F+N VL  ++R  E
Sbjct: 88  IFFMDRVPDSAAINEAVKLAKKRGLAGLSGFVNGVLRNIARNRE 131


>gi|282910789|ref|ZP_06318592.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
           aureus subsp. aureus WBG10049]
 gi|282325394|gb|EFB55703.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
           aureus subsp. aureus WBG10049]
 gi|312438406|gb|ADQ77477.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
           aureus subsp. aureus TCH60]
          Length = 435

 Score = 74.4 bits (182), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 25/123 (20%), Positives = 50/123 (40%), Gaps = 6/123 (4%)

Query: 35  CSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEK 94
            +  +I++E   Y      E+  E+    +D   F  I++G + RK  +D  +   +  K
Sbjct: 11  DTIQDILNE-GAYSNLRINEVLSENELNVMDKALFTEIVYGTVKRKYTLDFYLRPFVKTK 69

Query: 95  WSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVS 154
                +   +  +L   + + +    VP   II+E V IA +         +N +L  + 
Sbjct: 70  -----IKAWVRQLLWMSIYQYVYLDKVPNHAIINEAVEIAKERGGYHNGNVVNGILRTMM 124

Query: 155 RKE 157
           R +
Sbjct: 125 RSD 127


>gi|329943115|ref|ZP_08291889.1| transcription antitermination factor NusB [Chlamydophila psittaci
           Cal10]
 gi|332287697|ref|YP_004422598.1| transcription antitermination factor NusB [Chlamydophila psittaci
           6BC]
 gi|313848271|emb|CBY17272.1| putative transcription termination-related protein [Chlamydophila
           psittaci RD1]
 gi|325506888|gb|ADZ18526.1| transcription antitermination factor NusB [Chlamydophila psittaci
           6BC]
 gi|328814662|gb|EGF84652.1| transcription antitermination factor NusB [Chlamydophila psittaci
           Cal10]
 gi|328914950|gb|AEB55783.1| transcription antitermination factor NusB [Chlamydophila psittaci
           6BC]
          Length = 164

 Score = 74.4 bits (182), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 29/140 (20%), Positives = 60/140 (42%), Gaps = 12/140 (8%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           +   R   +Q LY +D+   S   ++    +       E  V   +    L + + I+  
Sbjct: 22  KQKMREIVLQMLYALDMDPMSEESLVPLLMS-------ETAVTQKHASSALNFSKEIL-- 72

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
              +   +DLLI+    +  SF +L ++  ++LR  + E      +   ++I+E   +  
Sbjct: 73  --AKSSELDLLIAQT-VKNTSFEKLTLMEKNVLRLTLYEHFHGQPINTAILIAEATRLVK 129

Query: 136 DFFYGDEPKFINAVLDKVSR 155
            F Y +   F++AVL+ + R
Sbjct: 130 KFSYVEACSFVHAVLNDIFR 149


>gi|62185353|ref|YP_220138.1| transcription antitermination protein NusB [Chlamydophila abortus
           S26/3]
 gi|62148420|emb|CAH64187.1| putative transcription termination-related protein [Chlamydophila
           abortus S26/3]
          Length = 164

 Score = 74.4 bits (182), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 29/140 (20%), Positives = 60/140 (42%), Gaps = 12/140 (8%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           +   R   +Q LY +D+   S   ++    +       E  V   +    L + + I+  
Sbjct: 22  KQKMREIVLQMLYALDMDPMSEESLVPLLMS-------ETAVTQKHASSALNFSKEIL-- 72

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
              +   +DLLI+    +  SF +L ++  ++LR  + E      +   ++I+E   +  
Sbjct: 73  --AKSSELDLLIAQT-VKNTSFEKLTLMEKNVLRLTLYEHFHGQPINTAILIAEATRLVK 129

Query: 136 DFFYGDEPKFINAVLDKVSR 155
            F Y +   F++AVL+ + R
Sbjct: 130 KFSYVEACSFVHAVLNDIFR 149


>gi|297748961|gb|ADI51507.1| N utilization substance protein B [Chlamydia trachomatis D-EC]
 gi|297749841|gb|ADI52519.1| N utilization substance protein B [Chlamydia trachomatis D-LC]
          Length = 176

 Score = 74.4 bits (182), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 30/141 (21%), Positives = 57/141 (40%), Gaps = 15/141 (10%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           +   R   +QALY ++I       ++S   T           E+     +  +  +    
Sbjct: 29  KQKLRELVLQALYALEIDPEGEDSLVSLLMT-----------EASVSKKNAAYALMFCRA 77

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHS---VPVEVIISEYVC 132
           +   +  +D L+ + +    + +RL +I  +ILR  + E  +      VPV V+I+E   
Sbjct: 78  IRANQPDLDALLDATI-RTTTLARLTIIERNILRMMLFEHQQNQDCCPVPVAVLIAETTR 136

Query: 133 IAHDFFYGDEPKFINAVLDKV 153
           +   F Y +    I AVL  +
Sbjct: 137 LIKKFSYSEGSSLILAVLGSI 157


>gi|326389542|ref|ZP_08211109.1| sun protein [Thermoanaerobacter ethanolicus JW 200]
 gi|325994547|gb|EGD52972.1| sun protein [Thermoanaerobacter ethanolicus JW 200]
          Length = 444

 Score = 74.4 bits (182), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 31/139 (22%), Positives = 56/139 (40%), Gaps = 16/139 (11%)

Query: 20  RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79
           R  A + L           E++S+        +  L  +     +D  + + ++ GV++R
Sbjct: 4   REIAYKIL----------QEVLSKEAYANISFNKHLRSQE-LKEIDRGFTKELVFGVIER 52

Query: 80  KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139
           K  +D ++S  + +      +       L  G+ +L+    VP    I+E V IA     
Sbjct: 53  KYTLDFILSFFVKKAPDLKTM-----IFLEMGLYQLLYMDKVPSYAAINETVNIAKKVLG 107

Query: 140 GDEPKFINAVLDKVSRKEE 158
                FINAVL    R++E
Sbjct: 108 IKRANFINAVLRNYEREKE 126


>gi|210617187|ref|ZP_03291454.1| hypothetical protein CLONEX_03676 [Clostridium nexile DSM 1787]
 gi|210149462|gb|EEA80471.1| hypothetical protein CLONEX_03676 [Clostridium nexile DSM 1787]
          Length = 430

 Score = 74.4 bits (182), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 20/104 (19%), Positives = 46/104 (44%), Gaps = 2/104 (1%)

Query: 55  LDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLE 114
           L+        +  +   +  G ++R   +D +I+     K   +++  ++ +I+R+ V +
Sbjct: 10  LNKYQYLDKKERAFITRVTEGTLERMIELDYIINQF--SKVKVNKMKPVIRNIIRSAVYQ 67

Query: 115 LIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEE 158
           +    SVP     +E V +A    + +   F+N +L  + R  E
Sbjct: 68  MKYMDSVPNSAACNEAVKLAVKKGFVNLKGFVNGLLRNIDRNLE 111


>gi|282916466|ref|ZP_06324228.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
           aureus subsp. aureus D139]
 gi|283770278|ref|ZP_06343170.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
           aureus subsp. aureus H19]
 gi|282319906|gb|EFB50254.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
           aureus subsp. aureus D139]
 gi|283460425|gb|EFC07515.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
           aureus subsp. aureus H19]
          Length = 435

 Score = 74.4 bits (182), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 25/123 (20%), Positives = 50/123 (40%), Gaps = 6/123 (4%)

Query: 35  CSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEK 94
            +  +I++E   Y      E+  E+    +D   F  I++G + RK  +D  +   +  K
Sbjct: 11  DTIQDILNE-GAYSNLRINEVLSENELNIMDKALFTEIVYGTIKRKYTLDFYLKPFVKTK 69

Query: 95  WSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVS 154
                +   +  +L   + + +    VP   II+E V IA +         +N +L  + 
Sbjct: 70  -----IKAWVRQLLWMSIYQYVYLDKVPNHAIINEAVEIAKERGGYHNGNVVNGILRTMM 124

Query: 155 RKE 157
           R +
Sbjct: 125 RSD 127


>gi|166154176|ref|YP_001654294.1| transcription antitermination protein NusB [Chlamydia trachomatis
           434/Bu]
 gi|166155051|ref|YP_001653306.1| transcription antitermination protein NusB [Chlamydia trachomatis
           L2b/UCH-1/proctitis]
 gi|301335421|ref|ZP_07223665.1| transcription antitermination protein NusB [Chlamydia trachomatis
           L2tet1]
 gi|238687432|sp|B0B961|NUSB_CHLT2 RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|238687451|sp|B0BAU0|NUSB_CHLTB RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|165930164|emb|CAP03648.1| Antitermination protein [Chlamydia trachomatis 434/Bu]
 gi|165931039|emb|CAP06602.1| Antitermination protein [Chlamydia trachomatis L2b/UCH-1/proctitis]
          Length = 168

 Score = 74.4 bits (182), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 30/141 (21%), Positives = 57/141 (40%), Gaps = 15/141 (10%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           +   R   +QALY ++I       ++S   T           E+     +  +  +    
Sbjct: 21  KQKLRELVLQALYALEIDPEGEDSLVSLLMT-----------EASVSKKNAAYALMFCRA 69

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHS---VPVEVIISEYVC 132
           +   +  +D L+ + +    + +RL +I  +ILR  + E  +      VPV V+I+E   
Sbjct: 70  IRANQPDLDALLDATI-RTTTLARLTIIERNILRMMLFEHQQNQDCCPVPVAVLIAETTR 128

Query: 133 IAHDFFYGDEPKFINAVLDKV 153
           +   F Y +    I AVL  +
Sbjct: 129 LIKKFSYSEGSSLILAVLGSI 149


>gi|302035777|ref|YP_003796099.1| ribosomal RNA small subunit methyltransferase B [Candidatus
           Nitrospira defluvii]
 gi|300603841|emb|CBK40173.1| Ribosomal RNA small subunit methyltransferase B [Candidatus
           Nitrospira defluvii]
          Length = 449

 Score = 74.4 bits (182), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 23/97 (23%), Positives = 42/97 (43%), Gaps = 5/97 (5%)

Query: 65  DLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVE 124
           D  +   ++ GV+  +  +D  +   L      ++L  ++ +ILR G  +L+    VP  
Sbjct: 31  DRAFMVELVRGVLRYRATLDWRLG--LLSDRRITKLPTLVQTILRLGAYQLLYLDRVPDS 88

Query: 125 VIISEYVCIAHDFF---YGDEPKFINAVLDKVSRKEE 158
             ++E V +          D   F+NAVL  + R  E
Sbjct: 89  AAVNESVQMTKQQSRRLGRDWSGFVNAVLRALLRSPE 125


>gi|260584743|ref|ZP_05852489.1| ribosomal RNA small subunit methyltransferase B [Granulicatella
           elegans ATCC 700633]
 gi|260157766|gb|EEW92836.1| ribosomal RNA small subunit methyltransferase B [Granulicatella
           elegans ATCC 700633]
          Length = 441

 Score = 74.4 bits (182), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 21/117 (17%), Positives = 49/117 (41%), Gaps = 3/117 (2%)

Query: 41  ISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRL 100
           + + ++Y   +  ++  +  +   D      + +G + RK  ID  ++  + +     ++
Sbjct: 15  VEQDQSYSTISLKKVIEQQKWTAKDKGLLTELFYGTIQRKMTIDFYLAPYIQKA---KKI 71

Query: 101 DMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKE 157
              +  +LR  + +++    +P    I E V IA    +    KF+N VL    R +
Sbjct: 72  QPWVKQLLRISIYQMVFLDKIPDHAAIFEAVQIAKKRGHQGIAKFVNGVLRNFQRND 128


>gi|78778394|ref|YP_396506.1| transcription antitermination protein NusB [Prochlorococcus marinus
           str. MIT 9312]
 gi|78711893|gb|ABB49070.1| antitermination protein NusB [Prochlorococcus marinus str. MIT
           9312]
          Length = 208

 Score = 74.4 bits (182), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 22/81 (27%), Positives = 32/81 (39%), Gaps = 2/81 (2%)

Query: 73  IHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVC 132
           I   ++    ID  I   +   W   RL  I   ILR      I   + PV V   E V 
Sbjct: 124 ISKTINNLTIIDSDIDQAMD-GWKLKRLPRIDRDILRLA-YVDINFLNTPVAVACDEAVN 181

Query: 133 IAHDFFYGDEPKFINAVLDKV 153
           +A+ +      K IN +L ++
Sbjct: 182 LANKYSDMQGRKLINGILRRL 202


>gi|229828532|ref|ZP_04454601.1| hypothetical protein GCWU000342_00596 [Shuttleworthia satelles DSM
           14600]
 gi|229793126|gb|EEP29240.1| hypothetical protein GCWU000342_00596 [Shuttleworthia satelles DSM
           14600]
          Length = 429

 Score = 74.4 bits (182), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 23/137 (16%), Positives = 54/137 (39%), Gaps = 15/137 (10%)

Query: 20  RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79
           R   +Q L          + ++ E           LD  +        +   +  GV++R
Sbjct: 4   REIVLQIL----------SAVLEEGAYSHLLLQAVLDKYAYLDKRQRAFISRLTVGVIER 53

Query: 80  KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCI-AHDFF 138
           K  +D +++     +    ++  ++ + LR G+ +++   +VP     +E V + A  + 
Sbjct: 54  KISLDYILNHY--SRTPVKKMKPMIRNSLRMGLYQILYMDAVPDSAACNESVKLIARRYR 111

Query: 139 YGDEPKFINAVLDKVSR 155
                 F+N +L  ++R
Sbjct: 112 PLK--GFVNGLLRNIAR 126


>gi|241889945|ref|ZP_04777243.1| ribosomal RNA small subunit methyltransferase B [Gemella
           haemolysans ATCC 10379]
 gi|241863567|gb|EER67951.1| ribosomal RNA small subunit methyltransferase B [Gemella
           haemolysans ATCC 10379]
          Length = 441

 Score = 74.4 bits (182), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 24/138 (17%), Positives = 50/138 (36%), Gaps = 16/138 (11%)

Query: 19  ARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMD 78
           AR  A + LY I      +   +++Y       +            D  +   +++G + 
Sbjct: 6   ARHIAYEVLYTIIQEDGYSNITLNKYFNQYKVEEQ-----------DKRFISEVVYGSIK 54

Query: 79  RKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFF 138
            K +++ ++ S         R+   +  IL   + +L+     P   +I E V +     
Sbjct: 55  NKLYLEHILKSYSKG-----RVKPKVKVILLMSIYQLLYMDKTPNFAVIDEAVKLGKKIA 109

Query: 139 YGDEPKFINAVLDKVSRK 156
                KF+N +L  + R 
Sbjct: 110 GNITGKFVNGILRNIERN 127


>gi|239636304|ref|ZP_04677306.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
           warneri L37603]
 gi|239597659|gb|EEQ80154.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
           warneri L37603]
          Length = 435

 Score = 74.4 bits (182), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 24/122 (19%), Positives = 45/122 (36%), Gaps = 11/122 (9%)

Query: 39  EIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLT---EKW 95
           + I +   Y      E+        +D   F  +++G + RK  +D  +   L    + W
Sbjct: 14  QAILDEGAYSNLEINEVLSTYEISDLDKGLFTELVYGTVKRKYTLDFYLKPFLKTKIKGW 73

Query: 96  SFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSR 155
                   +  +L   + + +    VP   II+E V IA +         +N +L  + R
Sbjct: 74  --------VRELLWMSIYQYVYLDKVPNHAIINEAVEIAKEEGGYYTGNVVNGILRTIMR 125

Query: 156 KE 157
            E
Sbjct: 126 SE 127


>gi|307264803|ref|ZP_07546365.1| sun protein [Thermoanaerobacter wiegelii Rt8.B1]
 gi|306920061|gb|EFN50273.1| sun protein [Thermoanaerobacter wiegelii Rt8.B1]
          Length = 444

 Score = 74.4 bits (182), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 31/139 (22%), Positives = 56/139 (40%), Gaps = 16/139 (11%)

Query: 20  RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79
           R  A + L           E++S+        +  L  +     +D  + + ++ GV++R
Sbjct: 4   REIAYKIL----------QEVLSKEAYANISFNKHLRSQE-LKEIDRGFTKELVFGVIER 52

Query: 80  KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139
           K  +D ++S  + +      +       L  G+ +L+    VP    I+E V IA     
Sbjct: 53  KYTLDFILSFFVKKAPDLKTM-----IFLEMGLYQLLYMDKVPSYAAINETVNIAKKVLG 107

Query: 140 GDEPKFINAVLDKVSRKEE 158
                FINAVL    R++E
Sbjct: 108 IKRANFINAVLRNYEREKE 126


>gi|332670476|ref|YP_004453484.1| Fmu (Sun) domain-containing protein [Cellulomonas fimi ATCC 484]
 gi|332339514|gb|AEE46097.1| Fmu (Sun) domain protein [Cellulomonas fimi ATCC 484]
          Length = 568

 Score = 74.4 bits (182), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 34/156 (21%), Positives = 59/156 (37%), Gaps = 17/156 (10%)

Query: 4   QDNKKDLKLSHRRG---IARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESV 60
           +  +     + RR     AR AA   L             ++E + Y       +  E  
Sbjct: 45  RGTRTSAAPAQRRRSGDAARRAAFDTL-----------RAVAEGDAYANLVLPPMLRERG 93

Query: 61  YLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHS 120
               D  +   + +G +  +   D ++   L       R+D  +  +LR G  +L+    
Sbjct: 94  VQGRDAAFATELAYGTLRLRGRYDAVVE--LAAARPVDRIDAPVLDLLRLGTHQLLGMR- 150

Query: 121 VPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRK 156
           VP    +SE V +A +       +F+NAVL  VSR+
Sbjct: 151 VPAHAAVSETVGLAREVTGAGPAQFVNAVLRAVSRE 186


>gi|257886037|ref|ZP_05665690.1| rRNA SAM-dependent methyltransferase [Enterococcus faecium
           1,231,501]
 gi|257821893|gb|EEV49023.1| rRNA SAM-dependent methyltransferase [Enterococcus faecium
           1,231,501]
          Length = 452

 Score = 74.0 bits (181), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 23/104 (22%), Positives = 45/104 (43%), Gaps = 3/104 (2%)

Query: 53  TELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGV 112
            E+  +S     D+  F  +I+G +  ++ ++  ++  + +       D +  ++L   V
Sbjct: 35  NEMIKQSELNQKDVGLFTELIYGTISHQRLLEFYVAPLIAKAKKVD--DWV-KTLLYLSV 91

Query: 113 LELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRK 156
            +L     VP   I++E V IA         KF+N VL    R+
Sbjct: 92  YQLEFLDKVPAHAILNEAVEIAKVKGNPGTGKFVNGVLRNYQRQ 135


>gi|332799419|ref|YP_004460918.1| sun protein [Tepidanaerobacter sp. Re1]
 gi|332697154|gb|AEE91611.1| sun protein [Tepidanaerobacter sp. Re1]
          Length = 448

 Score = 74.0 bits (181), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 23/100 (23%), Positives = 41/100 (41%), Gaps = 2/100 (2%)

Query: 59  SVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIEC 118
           S     D      +++GV+     ID +IS     K   S++   + + +R G+ +    
Sbjct: 31  SDMSLKDRALVTELVNGVVQNLLRIDYIISQF--SKIDLSKISPFVKNAIRVGIYQTFFL 88

Query: 119 HSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEE 158
             VP    ++E V +   +       F NA+L  V RK +
Sbjct: 89  DRVPDFAAVNESVSLVKKYEGKRAANFTNAILRNVLRKRD 128


>gi|167037728|ref|YP_001665306.1| sun protein [Thermoanaerobacter pseudethanolicus ATCC 33223]
 gi|320116143|ref|YP_004186302.1| sun protein [Thermoanaerobacter brockii subsp. finnii Ako-1]
 gi|166856562|gb|ABY94970.1| sun protein [Thermoanaerobacter pseudethanolicus ATCC 33223]
 gi|319929234|gb|ADV79919.1| sun protein [Thermoanaerobacter brockii subsp. finnii Ako-1]
          Length = 444

 Score = 74.0 bits (181), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 31/139 (22%), Positives = 56/139 (40%), Gaps = 16/139 (11%)

Query: 20  RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79
           R  A + L           E++S+        +  L  +     +D  + + ++ GV++R
Sbjct: 4   REIAYKIL----------QEVLSKEAYANISFNKHLKGQE-LKEIDRGFTKELVFGVIER 52

Query: 80  KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139
           K  +D ++S  + +      +       L  G+ +L+    VP    I+E V IA     
Sbjct: 53  KYTLDFILSFFVKKAPDLKTM-----IFLEMGLYQLLYMDKVPSYAAINETVNIAKKVLG 107

Query: 140 GDEPKFINAVLDKVSRKEE 158
                FINAVL    R++E
Sbjct: 108 IKRANFINAVLRNYDREKE 126


>gi|182439855|ref|YP_001827574.1| putative RNA-binding Sun protein [Streptomyces griseus subsp.
           griseus NBRC 13350]
 gi|178468371|dbj|BAG22891.1| putative RNA-binding Sun protein [Streptomyces griseus subsp.
           griseus NBRC 13350]
          Length = 477

 Score = 74.0 bits (181), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 31/155 (20%), Positives = 60/155 (38%), Gaps = 12/155 (7%)

Query: 1   MTIQDNKKDLKLSHR--RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVE 58
           M  Q  ++  K   R  +   R  A +AL  +D        ++            +   +
Sbjct: 1   MNDQPRRRPAKPHRRPKKDPVRFLAFEALRAVDERDAYANLVLPPLL-------KKARAK 53

Query: 59  SVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIEC 118
             +   D      +++G + R+   D ++++C+        +D  +  +L  GV +L+  
Sbjct: 54  GDFDARDAALATELVYGTLRRQGTYDAIVAACIDR--PLREVDPPVLDVLNMGVHQLLGT 111

Query: 119 HSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKV 153
             +P    +S  V +A         KF+NAVL KV
Sbjct: 112 R-IPTHAAVSASVELARVVLGEGRAKFVNAVLRKV 145


>gi|307326811|ref|ZP_07606003.1| Fmu (Sun) domain protein [Streptomyces violaceusniger Tu 4113]
 gi|306887574|gb|EFN18568.1| Fmu (Sun) domain protein [Streptomyces violaceusniger Tu 4113]
          Length = 489

 Score = 74.0 bits (181), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 25/135 (18%), Positives = 53/135 (39%), Gaps = 5/135 (3%)

Query: 20  RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79
           R+ A +AL  +D        ++      R   ++       +   D      +++G +  
Sbjct: 29  RILAFEALRAVDERDAYANLVLPPLL--RKARESAEAGGPRFDARDAALATELVYGTLRH 86

Query: 80  KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139
           +   D +I+ C+        +D  +  +L  G  +L+    +P    +S  V +A     
Sbjct: 87  QGTYDAIIAECVDR--PLREVDPPVLDVLNLGAHQLLGTR-IPTHAAVSASVELARVVLG 143

Query: 140 GDEPKFINAVLDKVS 154
               KF+NAVL +++
Sbjct: 144 DGRAKFVNAVLRRIA 158


>gi|258592639|emb|CBE68948.1| Sun protein [NC10 bacterium 'Dutch sediment']
          Length = 467

 Score = 74.0 bits (181), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 29/139 (20%), Positives = 56/139 (40%), Gaps = 17/139 (12%)

Query: 19  ARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMD 78
           AR  A + L          T++  +        D +L  ++     D      + +GV+ 
Sbjct: 18  ARRLAFEIL----------TQVEEQQAYASLLLDAKLK-QARLSQQDRALATELTYGVLR 66

Query: 79  RKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFF 138
            +  +D L+++     W   R+D  L  +LR G  +++    VP    ++E V +A D  
Sbjct: 67  WQGRLDYLLAAVTDRPW--DRVDPALRRLLRLGAYQILFLTRVPAYAAVNETVALAQDVM 124

Query: 139 YGD----EPKFINAVLDKV 153
                     F+NA+L ++
Sbjct: 125 RSQLKPVAKAFVNAILRRL 143


>gi|257882565|ref|ZP_05662218.1| rRNA SAM-dependent methyltransferase [Enterococcus faecium
           1,231,502]
 gi|257818223|gb|EEV45551.1| rRNA SAM-dependent methyltransferase [Enterococcus faecium
           1,231,502]
          Length = 452

 Score = 74.0 bits (181), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 24/116 (20%), Positives = 45/116 (38%), Gaps = 3/116 (2%)

Query: 53  TELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGV 112
            E+  +S     D+  F  +I+G +  ++ ++  ++  + +         +   +L   V
Sbjct: 35  NEMIKQSELNQKDVGLFTELIYGTISHQRLLEFYVAPLIAKAKKVDDWVKM---LLYLSV 91

Query: 113 LELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRSGCVSAI 168
            +L     VP   I++E V IA         KF+N VL    R+      G    I
Sbjct: 92  YQLEFLDKVPAHAILNEAVEIAKVKGNPGTGKFVNGVLRNYQRQGAPDLQGIADPI 147


>gi|239939911|ref|ZP_04691848.1| putative RNA-binding Sun protein [Streptomyces roseosporus NRRL
           15998]
 gi|239986397|ref|ZP_04707061.1| putative RNA-binding Sun protein [Streptomyces roseosporus NRRL
           11379]
 gi|291443343|ref|ZP_06582733.1| RNA-binding Sun family protein [Streptomyces roseosporus NRRL
           15998]
 gi|291346290|gb|EFE73194.1| RNA-binding Sun family protein [Streptomyces roseosporus NRRL
           15998]
          Length = 477

 Score = 74.0 bits (181), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 31/155 (20%), Positives = 60/155 (38%), Gaps = 12/155 (7%)

Query: 1   MTIQDNKKDLKLSHR--RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVE 58
           M  Q  ++  K   R  +   R  A +AL  +D        ++            +   +
Sbjct: 1   MNDQPRRRPAKPHRRPKKDPVRFLAFEALRAVDERDAYANLVLPPLL-------KKARAK 53

Query: 59  SVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIEC 118
             +   D      +++G + R+   D ++++C+        +D  +  +L  GV +L+  
Sbjct: 54  GDFDGRDAALATELVYGTLRRQGTYDAIVAACIDR--PLREVDPPVLDVLNMGVHQLLGT 111

Query: 119 HSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKV 153
             +P    +S  V +A         KF+NAVL KV
Sbjct: 112 R-IPTHAAVSASVELARVVLGEGRAKFVNAVLRKV 145


>gi|297834138|ref|XP_002884951.1| NOL1/NOP2/sun family protein [Arabidopsis lyrata subsp. lyrata]
 gi|297330791|gb|EFH61210.1| NOL1/NOP2/sun family protein [Arabidopsis lyrata subsp. lyrata]
          Length = 525

 Score = 74.0 bits (181), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 24/88 (27%), Positives = 44/88 (50%), Gaps = 1/88 (1%)

Query: 71  VIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEY 130
            ++ G +  ++++D LI S    + +F  ++ +L  ILR GV E+I+    P  V+  E 
Sbjct: 116 DVVGGTIRWRRYLDHLIGSLCHNERTFRNMEPLLLQILRIGVYEIIKRDMPPYAVV-DEN 174

Query: 131 VCIAHDFFYGDEPKFINAVLDKVSRKEE 158
           V +A          F+N +L K+   +E
Sbjct: 175 VRLAKVALRPGAGDFVNGILRKLVSLKE 202


>gi|10172606|dbj|BAB01410.1| unnamed protein product [Arabidopsis thaliana]
          Length = 531

 Score = 74.0 bits (181), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 24/88 (27%), Positives = 44/88 (50%), Gaps = 1/88 (1%)

Query: 71  VIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEY 130
            ++ G +  ++++D LI S    + +F  ++ +L  ILR GV E+I+    P  V+  E 
Sbjct: 122 DVVGGTIRWRRYLDHLIGSLCHNERTFRNMEPLLLQILRIGVYEIIKRDMPPYAVV-DEN 180

Query: 131 VCIAHDFFYGDEPKFINAVLDKVSRKEE 158
           V +A          F+N +L K+   +E
Sbjct: 181 VRLAKVALRPGAGDFVNGILRKLVSLKE 208


>gi|294623688|ref|ZP_06702521.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
           faecium U0317]
 gi|291596903|gb|EFF28121.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
           faecium U0317]
          Length = 445

 Score = 74.0 bits (181), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 24/116 (20%), Positives = 45/116 (38%), Gaps = 3/116 (2%)

Query: 53  TELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGV 112
            E+  +S     D+  F  +I+G +  ++ ++  ++  + +         +   +L   V
Sbjct: 28  NEMIKQSELNQKDVGLFTELIYGTISHQRLLEFYVAPLIAKAKKVDDWVKM---LLYLSV 84

Query: 113 LELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRSGCVSAI 168
            +L     VP   I++E V IA         KF+N VL    R+      G    I
Sbjct: 85  YQLEFLDKVPAHAILNEAVEIAKVKGNPGTGKFVNGVLRNYQRQGAPDLQGIADPI 140


>gi|15605567|ref|NP_220353.1| transcription antitermination protein NusB [Chlamydia trachomatis
           D/UW-3/CX]
 gi|7387974|sp|O84839|NUSB_CHLTR RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|3329303|gb|AAC68429.1| Transcription termination factor [Chlamydia trachomatis D/UW-3/CX]
 gi|296436388|gb|ADH18562.1| transcription antitermination protein NusB [Chlamydia trachomatis
           G/9768]
 gi|296437319|gb|ADH19489.1| transcription antitermination protein NusB [Chlamydia trachomatis
           G/11222]
 gi|296438247|gb|ADH20408.1| transcription antitermination protein NusB [Chlamydia trachomatis
           G/11074]
 gi|297140748|gb|ADH97506.1| transcription antitermination protein NusB [Chlamydia trachomatis
           G/9301]
          Length = 168

 Score = 74.0 bits (181), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 30/141 (21%), Positives = 57/141 (40%), Gaps = 15/141 (10%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           +   R   +QALY ++I       ++S   T           E+     +  +  +    
Sbjct: 21  KQKLRELVLQALYALEIDPEGEDSLVSLLMT-----------EASVSKKNAAYALMFCRA 69

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHS---VPVEVIISEYVC 132
           +   +  +D L+ + +    + +RL +I  +ILR  + E  +      VPV V+I+E   
Sbjct: 70  IRANQPDLDALLDATI-RTTTLARLTIIERNILRMMLFEHQQNQDCCPVPVAVLIAETTR 128

Query: 133 IAHDFFYGDEPKFINAVLDKV 153
           +   F Y +    I AVL  +
Sbjct: 129 LIKKFSYSEGSSLILAVLGSI 149


>gi|294500982|ref|YP_003564682.1| ribosomal RNA small subunit methyltransferase B [Bacillus
           megaterium QM B1551]
 gi|294350919|gb|ADE71248.1| ribosomal RNA small subunit methyltransferase B [Bacillus
           megaterium QM B1551]
          Length = 446

 Score = 74.0 bits (181), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 20/91 (21%), Positives = 39/91 (42%), Gaps = 3/91 (3%)

Query: 65  DLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVE 124
           D      I++G + R+  +D  ++  L    +  +L   +  +LR  + +++    VP  
Sbjct: 41  DAGLLTEIVYGTIQRRDTLDYGLAPFLK---NPKKLQPWVRVLLRLSLYQMVYLDRVPDR 97

Query: 125 VIISEYVCIAHDFFYGDEPKFINAVLDKVSR 155
            I+ E V IA    +      +N VL  + R
Sbjct: 98  AILHEAVEIAKKRGHKGIASMVNGVLRNIQR 128


>gi|52785554|ref|YP_091383.1| YloM [Bacillus licheniformis ATCC 14580]
 gi|163119428|ref|YP_078968.2| rRNA SAM-dependent methyltransferase RmsB [Bacillus licheniformis
           ATCC 14580]
 gi|52348056|gb|AAU40690.1| YloM [Bacillus licheniformis ATCC 14580]
 gi|145902935|gb|AAU23330.2| rRNA SAM-dependent methyltransferase RmsB [Bacillus licheniformis
           ATCC 14580]
          Length = 448

 Score = 74.0 bits (181), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 24/146 (16%), Positives = 50/146 (34%), Gaps = 24/146 (16%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           +   R  A+ AL ++D     +  ++         +D            D      +++G
Sbjct: 2   KNNVREVALDALIKLDQNQAYSNLLLQSAMKANDLSDK-----------DRGLLTELVYG 50

Query: 76  VMDRKQHIDLLISSCLTE-----KWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEY 130
            +  K  +D ++   + +      W           +LR  + ++     +P    + E 
Sbjct: 51  TLQNKLALDYMLKPFIKKPEKVKDWVIH--------LLRMSLYQMEYLEKIPDRAALFEA 102

Query: 131 VCIAHDFFYGDEPKFINAVLDKVSRK 156
           V IA    +     F+N VL  V R+
Sbjct: 103 VEIAKRRGHKGISSFVNGVLRSVQRE 128


>gi|88809354|ref|ZP_01124862.1| transcription antitermination protein NusB [Synechococcus sp. WH
           7805]
 gi|88786573|gb|EAR17732.1| transcription antitermination protein NusB [Synechococcus sp. WH
           7805]
          Length = 210

 Score = 74.0 bits (181), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 24/81 (29%), Positives = 38/81 (46%), Gaps = 2/81 (2%)

Query: 73  IHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVC 132
           +  V+D +  +D  +   + E W  SRL  I   ILR  V++L      P  V  SE V 
Sbjct: 123 VQLVLDARASLDDQLDGVM-EGWRLSRLPRIDRDILRLAVVDLQTMK-TPASVACSEAVE 180

Query: 133 IAHDFFYGDEPKFINAVLDKV 153
           +A+ +      + IN VL ++
Sbjct: 181 LANRYSDEQGRRMINGVLRRL 201


>gi|326780519|ref|ZP_08239784.1| Fmu (Sun) domain protein [Streptomyces cf. griseus XylebKG-1]
 gi|326660852|gb|EGE45698.1| Fmu (Sun) domain protein [Streptomyces cf. griseus XylebKG-1]
          Length = 477

 Score = 74.0 bits (181), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 31/155 (20%), Positives = 60/155 (38%), Gaps = 12/155 (7%)

Query: 1   MTIQDNKKDLKLSHR--RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVE 58
           M  Q  ++  K   R  +   R  A +AL  +D        ++            +   +
Sbjct: 1   MNDQPRRRPAKPHRRPKKDPVRFLAFEALRAVDERDAYANLVLPPLL-------KKARAK 53

Query: 59  SVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIEC 118
             +   D      +++G + R+   D ++++C+        +D  +  +L  GV +L+  
Sbjct: 54  GDFDARDAALATELVYGTLRRQGTYDAIVAACIDR--PLREVDPPVLDVLNMGVHQLLGT 111

Query: 119 HSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKV 153
             +P    +S  V +A         KF+NAVL KV
Sbjct: 112 R-IPTHAAVSASVELARVVLGEGRAKFVNAVLRKV 145


>gi|319646043|ref|ZP_08000273.1| YloM protein [Bacillus sp. BT1B_CT2]
 gi|317391793|gb|EFV72590.1| YloM protein [Bacillus sp. BT1B_CT2]
          Length = 444

 Score = 74.0 bits (181), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 24/142 (16%), Positives = 49/142 (34%), Gaps = 24/142 (16%)

Query: 20  RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79
           R  A+ AL ++D     +  ++         +D            D      +++G +  
Sbjct: 2   REVALDALIKLDQNQAYSNLLLQSAMKANDLSDK-----------DRGLLTELVYGTLQN 50

Query: 80  KQHIDLLISSCLTE-----KWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134
           K  +D ++   + +      W           +LR  + ++     +P    + E V IA
Sbjct: 51  KLALDYMLKPFIKKPEKVKDWVIH--------LLRMSLYQMEYLEKIPDRAALFEAVEIA 102

Query: 135 HDFFYGDEPKFINAVLDKVSRK 156
               +     F+N VL  V R+
Sbjct: 103 KRRGHKGISSFVNGVLRSVQRE 124


>gi|330685494|gb|EGG97147.1| NusB family protein [Staphylococcus epidermidis VCU121]
          Length = 228

 Score = 74.0 bits (181), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 24/122 (19%), Positives = 45/122 (36%), Gaps = 11/122 (9%)

Query: 39  EIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLT---EKW 95
           + I +   Y      E+        +D   F  +++G + RK  +D  +   L    + W
Sbjct: 14  QAILDEGAYSNLEINEVLSTYEISDLDKGLFTELVYGTVKRKYTLDFYLKPFLKTKIKGW 73

Query: 96  SFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSR 155
                   +  +L   + + +    VP   II+E V IA +         +N +L  + R
Sbjct: 74  --------VRELLWMSIYQYVYLDKVPDHAIINEAVEIAKEEGGYYTGNVVNGILRNIMR 125

Query: 156 KE 157
            E
Sbjct: 126 SE 127


>gi|224500053|ref|ZP_03668402.1| hypothetical protein LmonF1_10399 [Listeria monocytogenes Finland
           1988]
          Length = 399

 Score = 74.0 bits (181), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 24/89 (26%), Positives = 40/89 (44%), Gaps = 11/89 (12%)

Query: 71  VIIHGVMDRKQHIDLLISSCLTE---KWSFSRLDMILCSILRAGVLELIECHSVPVEVII 127
            +++G   RK  +D  ++  L +    W        + ++LR  V +L     VP   I+
Sbjct: 3   ELVYGTTQRKITLDYYLAPFLNKEPDNW--------VKNLLRMSVYQLTYLDKVPEHAIL 54

Query: 128 SEYVCIAHDFFYGDEPKFINAVLDKVSRK 156
           +E   IA +  +    KF+N VL  V RK
Sbjct: 55  NEAGDIAKNMGHQGVTKFVNGVLRNVIRK 83


>gi|297195546|ref|ZP_06912944.1| RNA-binding Sun protein [Streptomyces pristinaespiralis ATCC 25486]
 gi|297152839|gb|EDY65275.2| RNA-binding Sun protein [Streptomyces pristinaespiralis ATCC 25486]
          Length = 291

 Score = 74.0 bits (181), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 32/157 (20%), Positives = 61/157 (38%), Gaps = 12/157 (7%)

Query: 1   MTIQDNKKDLKLSHR--RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVE 58
           M+ Q   +  K   R  +   R+ A +AL  +D        ++          D      
Sbjct: 1   MSEQSRHRPAKPYRRPKKDPVRILAFEALRAVDERDAYANLVLPPLLKKAREKD------ 54

Query: 59  SVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIEC 118
             +   D      +++G + R+   D +I++C+        +D  +  +L  G  +L+  
Sbjct: 55  -DFDGRDAALATELVYGTLRRQGTYDAIIAACIDR--PLREVDPPVLDVLALGAHQLLGT 111

Query: 119 HSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSR 155
             +P    +S  V +A         KF+NAVL K+S+
Sbjct: 112 R-IPTHAAVSASVELARVVLGDGRAKFVNAVLRKISQ 147


>gi|94266030|ref|ZP_01289751.1| Fmu, rRNA SAM-dependent methyltransferase [delta proteobacterium
           MLMS-1]
 gi|93453425|gb|EAT03847.1| Fmu, rRNA SAM-dependent methyltransferase [delta proteobacterium
           MLMS-1]
          Length = 487

 Score = 74.0 bits (181), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 29/149 (19%), Positives = 60/149 (40%), Gaps = 21/149 (14%)

Query: 20  RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79
           R  A+Q L   +  G    +++         AD            D      +++GV+  
Sbjct: 8   RQVALQLLLAQEQSGQPVEQLLEHQLREHPLAD----------GRDRRLLEALVYGVLRW 57

Query: 80  KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139
           +  +D +++         +++  +  + LR G+L+L+    +P    I+E +        
Sbjct: 58  RGLLDQVVAGYARH--PLAKMKPLTLAALRLGILQLLILERLPASAAINETI---KALRA 112

Query: 140 GDEPK----FINAVLDKVSRKEEIKRSGC 164
             +P+    F+NAVL K +   +I+R G 
Sbjct: 113 ARQPRWLTGFVNAVLRKAA--ADIERLGR 139


>gi|168207268|ref|ZP_02633273.1| ribosomal RNA small subunit methyltransferase B [Clostridium
           perfringens E str. JGS1987]
 gi|169342659|ref|ZP_02629420.2| ribosomal RNA small subunit methyltransferase B [Clostridium
           perfringens C str. JGS1495]
 gi|169299165|gb|EDS81235.1| ribosomal RNA small subunit methyltransferase B [Clostridium
           perfringens C str. JGS1495]
 gi|170661376|gb|EDT14059.1| ribosomal RNA small subunit methyltransferase B [Clostridium
           perfringens E str. JGS1987]
          Length = 442

 Score = 74.0 bits (181), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 26/123 (21%), Positives = 57/123 (46%), Gaps = 7/123 (5%)

Query: 39  EIISEYETYRFCADTELDVESVYLHVDLE---WFRVIIHGVMDRKQHIDLLISSCLTEKW 95
           EI+         ++ E++ +     +D +       +++G +  K+ ID+++SS +    
Sbjct: 9   EILDNVLLNGAYSNIEINKQFASNDIDPKDKGLITEVVYGTIKYKKMIDIILSSFVA--- 65

Query: 96  SFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSR 155
              ++D  + +ILR+ + ++     VP   I++E V +  +    +  KF+N VL    R
Sbjct: 66  DIGKIDESVVNILRSAIYQMKFLDRVPPYAIVNEAVNLTKE-TEPNLAKFVNGVLRNYLR 124

Query: 156 KEE 158
            E 
Sbjct: 125 NEN 127


>gi|295706330|ref|YP_003599405.1| ribosomal RNA small subunit methyltransferase B [Bacillus
           megaterium DSM 319]
 gi|294803989|gb|ADF41055.1| ribosomal RNA small subunit methyltransferase B [Bacillus
           megaterium DSM 319]
          Length = 446

 Score = 73.6 bits (180), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 20/91 (21%), Positives = 39/91 (42%), Gaps = 3/91 (3%)

Query: 65  DLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVE 124
           D      I++G + R+  +D  ++  L    +  +L   +  +LR  + +++    VP  
Sbjct: 41  DAGLLTEIVYGTIQRRDTLDYGLAPFLK---NPKKLQPWVRVLLRLSLYQMVYLDRVPDR 97

Query: 125 VIISEYVCIAHDFFYGDEPKFINAVLDKVSR 155
            I+ E V IA    +      +N VL  + R
Sbjct: 98  AILHEAVEIAKKRGHKGIASMVNGVLRNIQR 128


>gi|168210626|ref|ZP_02636251.1| ribosomal RNA small subunit methyltransferase B [Clostridium
           perfringens B str. ATCC 3626]
 gi|168214218|ref|ZP_02639843.1| ribosomal RNA small subunit methyltransferase B [Clostridium
           perfringens CPE str. F4969]
 gi|168217028|ref|ZP_02642653.1| ribosomal RNA small subunit methyltransferase B [Clostridium
           perfringens NCTC 8239]
 gi|182625836|ref|ZP_02953602.1| ribosomal RNA small subunit methyltransferase B [Clostridium
           perfringens D str. JGS1721]
 gi|170711319|gb|EDT23501.1| ribosomal RNA small subunit methyltransferase B [Clostridium
           perfringens B str. ATCC 3626]
 gi|170714316|gb|EDT26498.1| ribosomal RNA small subunit methyltransferase B [Clostridium
           perfringens CPE str. F4969]
 gi|177908870|gb|EDT71362.1| ribosomal RNA small subunit methyltransferase B [Clostridium
           perfringens D str. JGS1721]
 gi|182380885|gb|EDT78364.1| ribosomal RNA small subunit methyltransferase B [Clostridium
           perfringens NCTC 8239]
          Length = 442

 Score = 73.6 bits (180), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 26/123 (21%), Positives = 57/123 (46%), Gaps = 7/123 (5%)

Query: 39  EIISEYETYRFCADTELDVESVYLHVDLE---WFRVIIHGVMDRKQHIDLLISSCLTEKW 95
           EI+         ++ E++ +     +D +       +++G +  K+ ID+++SS +    
Sbjct: 9   EILDNVLLNGAYSNIEINKQFASNDIDPKDKGLITEVVYGTIKYKKMIDIILSSFVA--- 65

Query: 96  SFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSR 155
              ++D  + +ILR+ + ++     VP   I++E V +  +    +  KF+N VL    R
Sbjct: 66  DIGKIDESVVNILRSAIYQMKFLDRVPPYAIVNEAVNLTKE-TEPNLAKFVNGVLRNYLR 124

Query: 156 KEE 158
            E 
Sbjct: 125 NEN 127


>gi|242373505|ref|ZP_04819079.1| rRNA (cytosine-5-)-methyltransferase [Staphylococcus epidermidis
           M23864:W1]
 gi|242348868|gb|EES40470.1| rRNA (cytosine-5-)-methyltransferase [Staphylococcus epidermidis
           M23864:W1]
          Length = 435

 Score = 73.6 bits (180), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 22/126 (17%), Positives = 49/126 (38%), Gaps = 12/126 (9%)

Query: 35  CSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLT-- 92
            +  +++++   Y      E+   +    VD   +  +++G + RK  +D ++   +   
Sbjct: 11  DTIQQVLND-GAYSNLKINEVLSSNEISTVDRNLYTELVYGTIKRKYTLDYILKPFVKTK 69

Query: 93  -EKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLD 151
            + W        +  +L   + + +    VP   II+E V IA           +N +L 
Sbjct: 70  IKGW--------MRQLLWMSIYQYVYLDKVPDHAIINEAVDIAKHRGGYHNGNVVNGILR 121

Query: 152 KVSRKE 157
            + R E
Sbjct: 122 SIMRSE 127


>gi|329938919|ref|ZP_08288293.1| ribosomal RNA small subunit methyltransferase B [Streptomyces
           griseoaurantiacus M045]
 gi|329301804|gb|EGG45697.1| ribosomal RNA small subunit methyltransferase B [Streptomyces
           griseoaurantiacus M045]
          Length = 472

 Score = 73.6 bits (180), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 33/159 (20%), Positives = 61/159 (38%), Gaps = 14/159 (8%)

Query: 1   MTIQDNK--KDLKLSHR--RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELD 56
           M+ Q  +  K  K   R  +   R  A +AL  +D        ++          D    
Sbjct: 1   MSDQSRRPRKPGKPYRRPQKDPVRFLAFEALRAVDERDAYANLVLPPLLRKAREQD---- 56

Query: 57  VESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELI 116
               +   D      +++G + R+   D ++++C+        +D  +  +L  G  +L+
Sbjct: 57  ---GFDGRDAALATELVYGTLRRQGTYDAILAACVDR--PLREVDPPVLDVLSLGAHQLL 111

Query: 117 ECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSR 155
               +P    +S  V +A         KF+NAVL KV+R
Sbjct: 112 GTR-IPTHAAVSASVELARVVLGDGRAKFVNAVLRKVAR 149


>gi|120403672|ref|YP_953501.1| Fmu (Sun) domain-containing protein [Mycobacterium vanbaalenii
           PYR-1]
 gi|119956490|gb|ABM13495.1| Fmu (Sun) domain protein [Mycobacterium vanbaalenii PYR-1]
          Length = 449

 Score = 73.6 bits (180), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 32/149 (21%), Positives = 57/149 (38%), Gaps = 15/149 (10%)

Query: 12  LSHRR-GIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFR 70
           +  +R   AR AA   L             +SE + Y   A   L  +      D  +  
Sbjct: 1   MKRKRLDPARQAAFDVL-----------RAVSERDAYANLALPALLRDRGITGRDAAFAT 49

Query: 71  VIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEY 130
            + +G    +  +D +I++         ++D +L  +LR G  +L+    V     +S  
Sbjct: 50  ELTYGTCRTRGLLDAVIAAA--AGRPVDKIDPVLLDLLRLGSYQLL-RTRVDDHAAVSTT 106

Query: 131 VCIAHDFFYGDEPKFINAVLDKVSRKEEI 159
           V  A   F      F+N VL  ++R++E 
Sbjct: 107 VDQAGIEFDSSRAGFVNGVLRTIARRDEA 135


>gi|315658498|ref|ZP_07911370.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
           lugdunensis M23590]
 gi|315496827|gb|EFU85150.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
           lugdunensis M23590]
          Length = 435

 Score = 73.6 bits (180), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 24/126 (19%), Positives = 48/126 (38%), Gaps = 12/126 (9%)

Query: 35  CSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLT-- 92
            S   I++E   Y      ++        VD   +  +++G + RK  +D  +   +   
Sbjct: 11  DSIHAILNE-GAYSNLEINDVLSSQDLSAVDKGLYTELVYGTIKRKFTLDYYLRPFVQTK 69

Query: 93  -EKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLD 151
            + W        +  +L   + + +    VP   II+E V IA           +NA+L 
Sbjct: 70  IKGW--------VRQLLWMSIYQYVYLDKVPNHAIINEAVEIAKHRGGPHNGNIVNAILR 121

Query: 152 KVSRKE 157
           ++ R +
Sbjct: 122 QIMRSD 127


>gi|29833420|ref|NP_828054.1| RNA-binding Sun protein [Streptomyces avermitilis MA-4680]
 gi|29610543|dbj|BAC74589.1| putative RNA-binding Sun protein [Streptomyces avermitilis MA-4680]
          Length = 476

 Score = 73.6 bits (180), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 33/159 (20%), Positives = 63/159 (39%), Gaps = 14/159 (8%)

Query: 1   MTIQDN--KKDLKLSHR--RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELD 56
           M+ Q    +K  K   R  +   R  A +AL  +D        ++            +  
Sbjct: 1   MSEQSRQPRKPGKPHRRPQKDPVRFLAFEALRAVDERDAYANLVLPPLLR-------KAR 53

Query: 57  VESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELI 116
            +  +   D      +++G + R+   D +I++C+        +D  +  +L  GV +L+
Sbjct: 54  QKGDFDGRDAALATELVYGTLRRQGTYDAVIAACVDR--PLREVDPPVLDVLSLGVHQLL 111

Query: 117 ECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSR 155
               +P    +S  V +A         KF+NAVL KV++
Sbjct: 112 GTR-IPTHAAVSASVELARVVLGDGRAKFVNAVLRKVAQ 149


>gi|167040389|ref|YP_001663374.1| sun protein [Thermoanaerobacter sp. X514]
 gi|256752273|ref|ZP_05493136.1| sun protein [Thermoanaerobacter ethanolicus CCSD1]
 gi|300914473|ref|ZP_07131789.1| sun protein [Thermoanaerobacter sp. X561]
 gi|307724291|ref|YP_003904042.1| sun protein [Thermoanaerobacter sp. X513]
 gi|166854629|gb|ABY93038.1| sun protein [Thermoanaerobacter sp. X514]
 gi|256748841|gb|EEU61882.1| sun protein [Thermoanaerobacter ethanolicus CCSD1]
 gi|300889408|gb|EFK84554.1| sun protein [Thermoanaerobacter sp. X561]
 gi|307581352|gb|ADN54751.1| sun protein [Thermoanaerobacter sp. X513]
          Length = 444

 Score = 73.6 bits (180), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 31/139 (22%), Positives = 56/139 (40%), Gaps = 16/139 (11%)

Query: 20  RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79
           R  A + L           E++S+        +  L  +     +D  + + ++ GV++R
Sbjct: 4   REIAYKIL----------QEVLSKEAYANISFNKHLKGQE-LKEIDRGFTKELVFGVIER 52

Query: 80  KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139
           K  +D ++S  + +      +       L  G+ +L+    VP    I+E V IA     
Sbjct: 53  KYTLDFILSFFVNKAPDLKTM-----IFLEMGLYQLLYMDKVPSYAAINETVNIAKKVLG 107

Query: 140 GDEPKFINAVLDKVSRKEE 158
                FINAVL    R++E
Sbjct: 108 IKRANFINAVLRNYDREKE 126


>gi|22331043|ref|NP_187924.2| NOL1/NOP2/sun family protein / antitermination NusB
           domain-containing protein [Arabidopsis thaliana]
 gi|18176252|gb|AAL60011.1| putative sun protein fmu [Arabidopsis thaliana]
 gi|21436219|gb|AAM51397.1| putative sun protein fmu [Arabidopsis thaliana]
 gi|110740623|dbj|BAE98415.1| putative sun (fmu) protein [Arabidopsis thaliana]
 gi|332641785|gb|AEE75306.1| ribosomal RNA small subunit methyltransferase B [Arabidopsis
           thaliana]
          Length = 523

 Score = 73.6 bits (180), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 24/88 (27%), Positives = 44/88 (50%), Gaps = 1/88 (1%)

Query: 71  VIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEY 130
            ++ G +  ++++D LI S    + +F  ++ +L  ILR GV E+I+    P  V+  E 
Sbjct: 114 DVVGGTIRWRRYLDHLIGSLCHNERTFRNMEPLLLQILRIGVYEIIKRDMPPYAVV-DEN 172

Query: 131 VCIAHDFFYGDEPKFINAVLDKVSRKEE 158
           V +A          F+N +L K+   +E
Sbjct: 173 VRLAKVALRPGAGDFVNGILRKLVSLKE 200


>gi|224476326|ref|YP_002633932.1| putative NusB_Sun RNA binding protein [Staphylococcus carnosus
           subsp. carnosus TM300]
 gi|222420933|emb|CAL27747.1| putative NusB_Sun RNA binding protein [Staphylococcus carnosus
           subsp. carnosus TM300]
          Length = 435

 Score = 73.6 bits (180), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 25/138 (18%), Positives = 48/138 (34%), Gaps = 16/138 (11%)

Query: 20  RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79
           R  A + L           E I + + Y      E+   +     D      +++G + R
Sbjct: 5   RALAFETL-----------EAIFQDKAYSNLKLNEVLKANELSRADKNLLTELVYGTIKR 53

Query: 80  KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139
           K  ++  +   +      +R+   +  +L   + +      VP   II+E V IA     
Sbjct: 54  KITLEYYLKPFVQ-----TRIKGWMRHLLWMSIYQYQYLDKVPDHAIINEAVEIAKVRGG 108

Query: 140 GDEPKFINAVLDKVSRKE 157
               K +N +L  + R  
Sbjct: 109 LHNSKVVNGILRNMMRSN 126


>gi|16078637|ref|NP_389456.1| RNA-binding Sun protein [Bacillus subtilis subsp. subtilis str.
           168]
 gi|221309449|ref|ZP_03591296.1| hypothetical protein Bsubs1_08691 [Bacillus subtilis subsp.
           subtilis str. 168]
 gi|221313774|ref|ZP_03595579.1| hypothetical protein BsubsN3_08627 [Bacillus subtilis subsp.
           subtilis str. NCIB 3610]
 gi|221318698|ref|ZP_03599992.1| hypothetical protein BsubsJ_08561 [Bacillus subtilis subsp.
           subtilis str. JH642]
 gi|221322969|ref|ZP_03604263.1| hypothetical protein BsubsS_08667 [Bacillus subtilis subsp.
           subtilis str. SMY]
 gi|3915867|sp|P94464|RSMB_BACSU RecName: Full=Ribosomal RNA small subunit methyltransferase B;
           AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
           rsmB
 gi|2337803|emb|CAA74264.1| putative Fmu protein [Bacillus subtilis subsp. subtilis str. 168]
 gi|2633946|emb|CAB13447.1| RNA-binding Sun protein; 16S rRNA m5C967 methyltransferase,
           S-adenosyl-L-methionine-dependent [Bacillus subtilis
           subsp. subtilis str. 168]
          Length = 447

 Score = 73.6 bits (180), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 21/142 (14%), Positives = 52/142 (36%), Gaps = 14/142 (9%)

Query: 15  RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74
           ++   R  A++AL +++     +  ++         +D            +      +++
Sbjct: 2   KKTSVRDIALEALIKLEQNQAYSNLLLKSVIKSNELSDQ-----------NRGLLTELVY 50

Query: 75  GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134
           G +  K  +D ++   + +          +  +LR  + ++     +P    I E V IA
Sbjct: 51  GTLQNKIALDYMLKPFINKPQKVK---PWVIQLLRLSLYQMEYLEKIPDRAAIHEAVEIA 107

Query: 135 HDFFYGDEPKFINAVLDKVSRK 156
               +     F+N VL  + R+
Sbjct: 108 KIRGHKGIASFVNGVLRSIQRE 129


>gi|315282824|ref|ZP_07871146.1| ribosomal RNA small subunit methyltransferase B [Listeria marthii
           FSL S4-120]
 gi|313613532|gb|EFR87354.1| ribosomal RNA small subunit methyltransferase B [Listeria marthii
           FSL S4-120]
          Length = 400

 Score = 73.6 bits (180), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 25/91 (27%), Positives = 40/91 (43%), Gaps = 11/91 (12%)

Query: 69  FRVIIHGVMDRKQHIDLLISSCLTE---KWSFSRLDMILCSILRAGVLELIECHSVPVEV 125
              +++G   RK  +D  ++  L +    W        + ++LR  V +L     VP   
Sbjct: 2   LTELVYGTTQRKITLDYYLAPFLNKEPDNW--------VKNLLRMSVYQLTFLDKVPEHA 53

Query: 126 IISEYVCIAHDFFYGDEPKFINAVLDKVSRK 156
           I++E   IA D  +    KF+N VL  V RK
Sbjct: 54  ILNEAGDIAKDLGHQGVTKFVNGVLRNVIRK 84


>gi|110800441|ref|YP_696427.1| ribosomal RNA small subunit methyltransferase B [Clostridium
           perfringens ATCC 13124]
 gi|110675088|gb|ABG84075.1| ribosomal RNA small subunit methyltransferase B [Clostridium
           perfringens ATCC 13124]
          Length = 442

 Score = 73.6 bits (180), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 26/123 (21%), Positives = 57/123 (46%), Gaps = 7/123 (5%)

Query: 39  EIISEYETYRFCADTELDVESVYLHVDLE---WFRVIIHGVMDRKQHIDLLISSCLTEKW 95
           EI+         ++ E++ +     +D +       +++G +  K+ ID+++SS +    
Sbjct: 9   EILDNVLLNGAYSNIEINKQFASNDIDPKDKGLITEVVYGTIKYKKMIDIILSSFVA--- 65

Query: 96  SFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSR 155
              ++D  + +ILR+ + ++     VP   I++E V +  +    +  KF+N VL    R
Sbjct: 66  DIGKIDESVVNILRSAIYQMKFLDRVPPYAIVNEAVNLTKE-TEPNLAKFVNGVLRNYLR 124

Query: 156 KEE 158
            E 
Sbjct: 125 NEN 127


>gi|320093626|ref|ZP_08025510.1| Fmu (Sun) domain protein [Actinomyces sp. oral taxon 178 str.
           F0338]
 gi|319979414|gb|EFW10892.1| Fmu (Sun) domain protein [Actinomyces sp. oral taxon 178 str.
           F0338]
          Length = 514

 Score = 73.6 bits (180), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 29/144 (20%), Positives = 59/144 (40%), Gaps = 11/144 (7%)

Query: 15  RRGIA-RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVII 73
           RR  A R  A + L ++   G     ++ +           +  E  +   D  +   ++
Sbjct: 37  RRADAPRRVAFEVLSEVTSSGAFANIVLPKALRR-------IRREEPFDDRDAAFTSELV 89

Query: 74  HGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCI 133
           HG +  +  +D  ++  +        LD  +  +LR G  +L++   VP    +S  V +
Sbjct: 90  HGTLRARGRLDWALARHVDR--PLGDLDPRVLDLLRMGAHQLLDMR-VPDHAAVSATVDV 146

Query: 134 AHDFFYGDEPKFINAVLDKVSRKE 157
           A +       + +NAVL  ++R+E
Sbjct: 147 AREHLTDGPVRMVNAVLRALAREE 170


>gi|328466174|gb|EGF37331.1| 16S rRNA methyltransferase B [Listeria monocytogenes 1816]
          Length = 399

 Score = 73.6 bits (180), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 25/89 (28%), Positives = 40/89 (44%), Gaps = 11/89 (12%)

Query: 71  VIIHGVMDRKQHIDLLISSCLTE---KWSFSRLDMILCSILRAGVLELIECHSVPVEVII 127
            +++G   RK  +D  ++  L +    W        + ++LR  V +L     VP   I+
Sbjct: 3   ELVYGTTQRKITLDYYLAPFLNKEPDNW--------VKNLLRMSVYQLTFLDKVPEHAIL 54

Query: 128 SEYVCIAHDFFYGDEPKFINAVLDKVSRK 156
           +E   IA D  +    KF+N VL  V RK
Sbjct: 55  NEAGDIAKDLGHQGVTKFVNGVLRNVIRK 83


>gi|331269683|ref|YP_004396175.1| ribosomal RNA small subunit methyltransferase B [Clostridium
           botulinum BKT015925]
 gi|329126233|gb|AEB76178.1| ribosomal RNA small subunit methyltransferase B [Clostridium
           botulinum BKT015925]
          Length = 443

 Score = 73.6 bits (180), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 22/96 (22%), Positives = 41/96 (42%), Gaps = 2/96 (2%)

Query: 63  HVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVP 122
             D      I++G +  K  ID ++++ L +      +D  + +ILR  + ++     +P
Sbjct: 37  DKDKGLITEIVYGTIKYKYTIDTILNAYLKKG--TKSVDSYILNILRTTIYQIKYLDKIP 94

Query: 123 VEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEE 158
               ++E V IA       E K +N VL    R  +
Sbjct: 95  NFAAVNEAVNIAKKHKSIGESKLVNGVLRNYLRNLD 130


>gi|289551003|ref|YP_003471907.1| Ribosomal RNA small subunit methyltransferase B [Staphylococcus
           lugdunensis HKU09-01]
 gi|289180535|gb|ADC87780.1| Ribosomal RNA small subunit methyltransferase B [Staphylococcus
           lugdunensis HKU09-01]
          Length = 435

 Score = 73.6 bits (180), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 24/126 (19%), Positives = 48/126 (38%), Gaps = 12/126 (9%)

Query: 35  CSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLT-- 92
            S   I++E   Y      ++        VD   +  +++G + RK  +D  +   +   
Sbjct: 11  DSIHAILNE-GAYSNLEINDVLSSQDLSAVDKGLYTELVYGTIKRKFTLDYYLRPFVQTK 69

Query: 93  -EKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLD 151
            + W        +  +L   + + +    VP   II+E V IA           +NA+L 
Sbjct: 70  IKGW--------VRQLLWMSIYQYVYLDKVPNHAIINEAVEIAKHRGGPHNGNIVNAILR 121

Query: 152 KVSRKE 157
           ++ R +
Sbjct: 122 QIMRSD 127


>gi|293374996|ref|ZP_06621291.1| ribosomal RNA small subunit methyltransferase B [Turicibacter
           sanguinis PC909]
 gi|325843368|ref|ZP_08167951.1| ribosomal RNA small subunit methyltransferase B [Turicibacter sp.
           HGF1]
 gi|292646406|gb|EFF64421.1| ribosomal RNA small subunit methyltransferase B [Turicibacter
           sanguinis PC909]
 gi|325489397|gb|EGC91770.1| ribosomal RNA small subunit methyltransferase B [Turicibacter sp.
           HGF1]
          Length = 444

 Score = 73.6 bits (180), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 28/141 (19%), Positives = 54/141 (38%), Gaps = 22/141 (15%)

Query: 19  ARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMD 78
           AR  A+Q L  I I G  +   +            E   +S     D  +   +++G + 
Sbjct: 4   ARELALQTLTDILINGAYSNHAL-----------NEQIEKSDLTIQDKNFMTELVYGTLQ 52

Query: 79  RKQHIDLLISSCL---TEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
            +Q ++   +       + W        +  +++  + +++   SVP    ISE V IA 
Sbjct: 53  HQQLLNFYATPFFNGKVKGW--------IRILIQMTLYQILYLDSVPEHAAISEAVNIAK 104

Query: 136 DFFYGDEPKFINAVLDKVSRK 156
                   K +NA+L ++ R 
Sbjct: 105 KRGGQFNGKLVNAILREMMRN 125


>gi|149182346|ref|ZP_01860824.1| sun protein [Bacillus sp. SG-1]
 gi|148849965|gb|EDL64137.1| sun protein [Bacillus sp. SG-1]
          Length = 445

 Score = 73.6 bits (180), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 24/145 (16%), Positives = 54/145 (37%), Gaps = 16/145 (11%)

Query: 12  LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71
           +S  +   R AA+  L           E + + ++Y          +      D      
Sbjct: 1   MSKGKKTVREAALDVL-----------ESVEKNQSYSNLLLNHAIEKYGIKGPDTGLLTE 49

Query: 72  IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
           + +G + R+  +D  ++  + +K     ++  +  +LR  + ++I    +P   ++ E V
Sbjct: 50  LTYGTIQRRMTLDFYLAPFINKK-----IESWVRQLLRLSLYQMIYLDKIPDRAVLFEAV 104

Query: 132 CIAHDFFYGDEPKFINAVLDKVSRK 156
            I     +      IN +L  + RK
Sbjct: 105 EIGKRRGHKGIASMINGILRSIQRK 129


>gi|119487592|ref|ZP_01621202.1| Fmu, rRNA SAM-dependent methyltransferase [Lyngbya sp. PCC 8106]
 gi|119455761|gb|EAW36897.1| Fmu, rRNA SAM-dependent methyltransferase [Lyngbya sp. PCC 8106]
          Length = 450

 Score = 73.6 bits (180), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 25/139 (17%), Positives = 50/139 (35%), Gaps = 13/139 (9%)

Query: 20  RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79
           R  A   L +++  G      + E              ++    V+      +++G + R
Sbjct: 6   RQLAFIILREVERRGVYADIALDENLR-----------KADLSAVNRRLTTELVYGCVRR 54

Query: 80  KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139
           ++ +D LI     +K         L  IL  G  +L     +P    ++  V +A     
Sbjct: 55  RRSLDALIDQFAQKKSHQQ--PPDLRIILHLGFYQLYYLSQIPASAAVNTSVELAKTNGL 112

Query: 140 GDEPKFINAVLDKVSRKEE 158
                F+N +L +  R++E
Sbjct: 113 SGLSGFVNGILREYLRQQE 131


>gi|317121758|ref|YP_004101761.1| sun protein [Thermaerobacter marianensis DSM 12885]
 gi|315591738|gb|ADU51034.1| sun protein [Thermaerobacter marianensis DSM 12885]
          Length = 511

 Score = 73.6 bits (180), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 21/97 (21%), Positives = 38/97 (39%), Gaps = 2/97 (2%)

Query: 59  SVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIEC 118
           +     +      + +GV  R+  +D  +S    +    +RLD  + + LR G  +L   
Sbjct: 93  AALPARERALATELAYGVARRQGTLDWALSRFSRK--PPARLDPPVRAALRLGAYQLWYL 150

Query: 119 HSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSR 155
             +P    + E V +           F+NAVL   +R
Sbjct: 151 DRIPAHAAVDESVNLVRRHGPAYAAGFVNAVLRAAAR 187


>gi|163815235|ref|ZP_02206612.1| hypothetical protein COPEUT_01395 [Coprococcus eutactus ATCC 27759]
 gi|158449430|gb|EDP26425.1| hypothetical protein COPEUT_01395 [Coprococcus eutactus ATCC 27759]
          Length = 452

 Score = 73.6 bits (180), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 23/120 (19%), Positives = 49/120 (40%), Gaps = 2/120 (1%)

Query: 39  EIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFS 98
           +I   +        T L         D  +   ++ GV +++  +D +++     K   +
Sbjct: 15  DIEKNHTFSNTALGTALRANQFMSKQDRAYITRMVEGVTEKRMRLDYIVNQFSKTK--IN 72

Query: 99  RLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEE 158
           +   ++  +LR G  E+    SV      +  V +A D  +G    F+N VL  ++R ++
Sbjct: 73  KCKPLIRCVLRMGTYEIFYMDSVQDHTACNLCVKLAADHGFGSLRGFVNGVLRNIARNKD 132


>gi|210617211|ref|ZP_03291455.1| hypothetical protein CLONEX_03677 [Clostridium nexile DSM 1787]
 gi|210149412|gb|EEA80421.1| hypothetical protein CLONEX_03677 [Clostridium nexile DSM 1787]
          Length = 177

 Score = 73.2 bits (179), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 22/120 (18%), Positives = 50/120 (41%), Gaps = 2/120 (1%)

Query: 39  EIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFS 98
           E+  + E         L+        +  +   +  G ++R   +D +I+     K   +
Sbjct: 17  EVTRDGEHSHIALRNVLNKYQYLDKKERAFITRVTEGTLERMIELDYIINQF--SKVKVN 74

Query: 99  RLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEE 158
           ++  ++ +I+R+ V ++    SVP     +E V +A    + +   F+N +L  + R  E
Sbjct: 75  KMKPVIRNIIRSAVYQMKYMDSVPNSAACNEAVKLAVKKGFVNLKGFVNGLLRNIDRNLE 134


>gi|242038659|ref|XP_002466724.1| hypothetical protein SORBIDRAFT_01g012890 [Sorghum bicolor]
 gi|241920578|gb|EER93722.1| hypothetical protein SORBIDRAFT_01g012890 [Sorghum bicolor]
          Length = 284

 Score = 73.2 bits (179), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 30/138 (21%), Positives = 52/138 (37%), Gaps = 19/138 (13%)

Query: 34  GCSTTEIISEYETYRFCADTELDVES-----------VYLHVDLEWFRVIIHGVM----D 78
           G    E+ +E E  +  +  E D  +           VY +  L   R ++  V      
Sbjct: 136 GGVPLEVGTEEEAEKLTSQNEKDSANEEDVLSAPPKLVYNNFVLRLSRELLVAVASGWDK 195

Query: 79  RKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFF 138
               ID +I     ++   +R+  +   IL   + E+      P +V+I+E V +A  F 
Sbjct: 196 HVDIIDKIIPQAWKDE-PVARI--LELCILHIAMAEMT-SKGTPHKVVINEAVDLAKRFC 251

Query: 139 YGDEPKFINAVLDKVSRK 156
            G  P+ IN  L    + 
Sbjct: 252 DGGAPRVINGCLRTFVKD 269


>gi|18310723|ref|NP_562657.1| RNA-binding Sun protein [Clostridium perfringens str. 13]
 gi|18145404|dbj|BAB81447.1| probable RNA-binding Sun protein [Clostridium perfringens str. 13]
          Length = 442

 Score = 73.2 bits (179), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 27/123 (21%), Positives = 57/123 (46%), Gaps = 7/123 (5%)

Query: 39  EIISEYETYRFCADTELDVESVYLHVDLE---WFRVIIHGVMDRKQHIDLLISSCLTEKW 95
           EI+         ++ E++ +     +D +       +++G +  K+ ID+++SS +    
Sbjct: 9   EILDNVLLNGAYSNIEINKQFASNDIDPKDKGLITEVVYGTIKYKKMIDIILSSFVA--- 65

Query: 96  SFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSR 155
              ++D  + +ILR+ + ++     VP   I++E V +  +    +  KFIN VL    R
Sbjct: 66  DIGKIDESVVNILRSAIYQMKFLDRVPPYAIVNEAVNLTKE-TEPNLAKFINGVLRNYLR 124

Query: 156 KEE 158
            E 
Sbjct: 125 NEN 127


>gi|254431134|ref|ZP_05044837.1| transcription antitermination protein NusB [Cyanobium sp. PCC 7001]
 gi|197625587|gb|EDY38146.1| transcription antitermination protein NusB [Cyanobium sp. PCC 7001]
          Length = 211

 Score = 73.2 bits (179), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 21/74 (28%), Positives = 36/74 (48%), Gaps = 2/74 (2%)

Query: 79  RKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFF 138
           +++ ID  +   + E W  +RL  I   ILR   ++L + H  P  V  +E V +A+ + 
Sbjct: 132 QREAIDRRLD-AVMEGWRLTRLPRIDRDILRLAAVDLADFH-TPAPVACNEAVDLANRYS 189

Query: 139 YGDEPKFINAVLDK 152
                + IN VL +
Sbjct: 190 DERGRRMINGVLRR 203


>gi|295105557|emb|CBL03101.1| ribosomal RNA small subunit methyltransferase RsmB
           [Faecalibacterium prausnitzii SL3/3]
          Length = 443

 Score = 73.2 bits (179), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 22/88 (25%), Positives = 40/88 (45%), Gaps = 3/88 (3%)

Query: 65  DLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVE 124
           D  +   I + V++ +  +D ++   L +    ++LD  +  ILRA + +      VPV 
Sbjct: 39  DKAFASAIFYTVLEHRGTLDYILEQFLPKG--LAKLDAPVREILRAALAQARYMQ-VPVS 95

Query: 125 VIISEYVCIAHDFFYGDEPKFINAVLDK 152
             ++E V +   F        +NAVL K
Sbjct: 96  AAVNEAVKLTRTFKKSSASGLVNAVLRK 123


>gi|171920577|ref|ZP_02931840.1| transcription antitermination factor NusB [Ureaplasma urealyticum
           serovar 13 str. ATCC 33698]
 gi|185179037|ref|ZP_02964782.1| transcription antitermination factor NusB [Ureaplasma urealyticum
           serovar 5 str. ATCC 27817]
 gi|188024190|ref|ZP_02996905.1| transcription antitermination factor NusB [Ureaplasma urealyticum
           serovar 7 str. ATCC 27819]
 gi|188518637|ref|ZP_03004078.1| transcription antitermination factor NusB [Ureaplasma urealyticum
           serovar 11 str. ATCC 33695]
 gi|188524479|ref|ZP_03004486.1| transcription antitermination factor NusB [Ureaplasma urealyticum
           serovar 12 str. ATCC 33696]
 gi|195867654|ref|ZP_03079656.1| transcription antitermination factor NusB [Ureaplasma urealyticum
           serovar 9 str. ATCC 33175]
 gi|198273709|ref|ZP_03206244.1| transcription antitermination factor NusB [Ureaplasma urealyticum
           serovar 4 str. ATCC 27816]
 gi|209554511|ref|YP_002284699.1| transcription antitermination factor NusB [Ureaplasma urealyticum
           serovar 10 str. ATCC 33699]
 gi|225550715|ref|ZP_03771664.1| transcription antitermination factor NusB [Ureaplasma urealyticum
           serovar 2 str. ATCC 27814]
 gi|225551022|ref|ZP_03771968.1| transcription antitermination factor NusB [Ureaplasma urealyticum
           serovar 8 str. ATCC 27618]
 gi|171903281|gb|EDT49570.1| transcription antitermination factor NusB [Ureaplasma urealyticum
           serovar 13 str. ATCC 33698]
 gi|184209018|gb|EDU06061.1| transcription antitermination factor NusB [Ureaplasma urealyticum
           serovar 5 str. ATCC 27817]
 gi|188018832|gb|EDU56872.1| transcription antitermination factor NusB [Ureaplasma urealyticum
           serovar 7 str. ATCC 27819]
 gi|188997767|gb|EDU66864.1| transcription antitermination factor NusB [Ureaplasma urealyticum
           serovar 11 str. ATCC 33695]
 gi|195659568|gb|EDX52948.1| transcription antitermination factor NusB [Ureaplasma urealyticum
           serovar 12 str. ATCC 33696]
 gi|195660711|gb|EDX53966.1| transcription antitermination factor NusB [Ureaplasma urealyticum
           serovar 9 str. ATCC 33175]
 gi|198249737|gb|EDY74518.1| transcription antitermination factor NusB [Ureaplasma urealyticum
           serovar 4 str. ATCC 27816]
 gi|209542012|gb|ACI60241.1| transcription antitermination factor NusB [Ureaplasma urealyticum
           serovar 10 str. ATCC 33699]
 gi|225378837|gb|EEH01202.1| transcription antitermination factor NusB [Ureaplasma urealyticum
           serovar 8 str. ATCC 27618]
 gi|225379869|gb|EEH02231.1| transcription antitermination factor NusB [Ureaplasma urealyticum
           serovar 2 str. ATCC 27814]
          Length = 127

 Score = 73.2 bits (179), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 30/134 (22%), Positives = 60/134 (44%), Gaps = 16/134 (11%)

Query: 20  RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79
           R+   Q +Y   I   + T  +          D ELDV  + +    E+       ++D 
Sbjct: 8   RVKLFQFVYHWLITKKNKTIALK-----SALVDFELDVSWLSVS---EY-------ILDN 52

Query: 80  KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139
            + +  +I   + + W+F RL  +  ++L +   E +     P ++II + +   H++  
Sbjct: 53  CEQLIKMIKPFINKDWTFERLSYVEQALLLSAYGEYL-VLKTPKKIIIDQTLITTHNYSN 111

Query: 140 GDEPKFINAVLDKV 153
            +  KFINA+LD++
Sbjct: 112 DESYKFINAILDQL 125


>gi|110803437|ref|YP_699027.1| sun protein [Clostridium perfringens SM101]
 gi|110683938|gb|ABG87308.1| ribosomal RNA small subunit methyltransferase B [Clostridium
           perfringens SM101]
          Length = 442

 Score = 73.2 bits (179), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 25/123 (20%), Positives = 57/123 (46%), Gaps = 7/123 (5%)

Query: 39  EIISEYETYRFCADTELDVESVYLHVDLE---WFRVIIHGVMDRKQHIDLLISSCLTEKW 95
           EI+         ++ E++ +     +D +       +++G +  K+ ID+++S+ +    
Sbjct: 9   EILDNVLLNGAYSNIEINKQFASNDIDPKDKGLITEVVYGTIKYKKMIDIILSNFVA--- 65

Query: 96  SFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSR 155
              ++D  + +ILR+ + ++     VP   I++E V +  +    +  KF+N VL    R
Sbjct: 66  DIGKIDESVVNILRSAIYQMKFLDRVPPYAIVNEAVNLTKE-TEPNLAKFVNGVLRNYLR 124

Query: 156 KEE 158
            E 
Sbjct: 125 NEN 127


>gi|15618897|ref|NP_225183.1| transcription antitermination protein NusB [Chlamydophila
           pneumoniae CWL029]
 gi|15836520|ref|NP_301044.1| transcription antitermination protein NusB [Chlamydophila
           pneumoniae J138]
 gi|7387979|sp|Q9Z6S0|NUSB_CHLPN RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|4377317|gb|AAD19126.1| CT832 hypothetical protein [Chlamydophila pneumoniae CWL029]
 gi|8979362|dbj|BAA99196.1| CT832 hypothetical protein [Chlamydophila pneumoniae J138]
          Length = 160

 Score = 73.2 bits (179), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 26/143 (18%), Positives = 60/143 (41%), Gaps = 12/143 (8%)

Query: 20  RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79
           R   +Q LY +D+   +   ++    +    +   + V                  ++++
Sbjct: 26  REIILQMLYALDMAPSAEDSLVPLLMSQTAVSQKHVLVALNQTKS-----------ILEK 74

Query: 80  KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139
            Q +DL+I + L +  SF  LD++  ++LR  + E      +   ++I+E + +   F Y
Sbjct: 75  SQELDLIIGNAL-KNKSFDSLDLVEKNVLRLTLFEHFYSPPINKAILIAEAIRLVKKFSY 133

Query: 140 GDEPKFINAVLDKVSRKEEIKRS 162
            +   FI A+L+ +     +  +
Sbjct: 134 SEACPFIQAILNDIFTDSSLNEN 156


>gi|16752038|ref|NP_445404.1| transcription antitermination protein NusB [Chlamydophila
           pneumoniae AR39]
 gi|7189778|gb|AAF38655.1| N utilization substance protein B, putative [Chlamydophila
           pneumoniae AR39]
          Length = 163

 Score = 73.2 bits (179), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 26/143 (18%), Positives = 60/143 (41%), Gaps = 12/143 (8%)

Query: 20  RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79
           R   +Q LY +D+   +   ++    +    +   + V                  ++++
Sbjct: 29  REIILQMLYALDMAPSAEDSLVPLLMSQTAVSQKHVLVALNQTKS-----------ILEK 77

Query: 80  KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139
            Q +DL+I + L +  SF  LD++  ++LR  + E      +   ++I+E + +   F Y
Sbjct: 78  SQELDLIIGNAL-KNKSFDSLDLVEKNVLRLTLFEHFYSPPINKAILIAEAIRLVKKFSY 136

Query: 140 GDEPKFINAVLDKVSRKEEIKRS 162
            +   FI A+L+ +     +  +
Sbjct: 137 SEACPFIQAILNDIFTDSSLNEN 159


>gi|313632754|gb|EFR99722.1| ribosomal RNA small subunit methyltransferase B [Listeria seeligeri
           FSL N1-067]
          Length = 446

 Score = 73.2 bits (179), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 29/146 (19%), Positives = 54/146 (36%), Gaps = 22/146 (15%)

Query: 14  HRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVII 73
            ++   R  A++ +             I   ++Y      +   +     +D      ++
Sbjct: 2   KKQKTVREIALELI-----------IKIENNQSYSHLLINDALKKQKLNPLDKGLLTELV 50

Query: 74  HGVMDRKQHIDLLISSCLTE---KWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEY 130
           +G   RK  +   ++  L +    W        + ++LR  V +L     VP   I++E 
Sbjct: 51  YGTTQRKITLXYYLAPFLNKEPDNW--------VKNLLRMSVYQLTFLDKVPEHAILNEA 102

Query: 131 VCIAHDFFYGDEPKFINAVLDKVSRK 156
             IA D  +    KF+N VL  V RK
Sbjct: 103 GDIAKDLGHQGVTKFVNGVLRNVIRK 128


>gi|269795116|ref|YP_003314571.1| tRNA/rRNA cytosine-C5-methylase [Sanguibacter keddieii DSM 10542]
 gi|269097301|gb|ACZ21737.1| tRNA/rRNA cytosine-C5-methylase [Sanguibacter keddieii DSM 10542]
          Length = 505

 Score = 73.2 bits (179), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 36/157 (22%), Positives = 62/157 (39%), Gaps = 17/157 (10%)

Query: 4   QDNKKDLKLSHRRG---IARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESV 60
           + ++  L  S RR     ARL A   L             +++ + Y       +     
Sbjct: 31  EGHRGSLAPSERRKGTDSARLVAFDVL-----------REVADSDAYANLVLPPMLRSRG 79

Query: 61  YLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHS 120
               D  +   + +G +  +   D +I  C+       ++D  +  +LR G  +L+    
Sbjct: 80  ISGRDAAFATELAYGTLRLRGRYDAIIGECVDR--PLDKIDAPVLDVLRLGAHQLLGMR- 136

Query: 121 VPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKE 157
           VP    +SE V +A D       +F+NAVL K+SR E
Sbjct: 137 VPSHAAVSETVGLARDRVGAGSAQFVNAVLRKISRTE 173


>gi|257068774|ref|YP_003155029.1| tRNA/rRNA cytosine-C5-methylase [Brachybacterium faecium DSM 4810]
 gi|256559592|gb|ACU85439.1| tRNA/rRNA cytosine-C5-methylase [Brachybacterium faecium DSM 4810]
          Length = 551

 Score = 73.2 bits (179), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 30/150 (20%), Positives = 59/150 (39%), Gaps = 14/150 (9%)

Query: 8   KDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLE 67
           +  + S R   +R  A++ L            ++ E ++Y       L         D  
Sbjct: 54  RPAERSRRSTPSRQVALEGL-----------RLVREEDSYANLVLPRLLRSHRVSGRDAA 102

Query: 68  WFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVII 127
           +   + +G +  +  +D ++++C+        +D  L  +LR G  +L++    P     
Sbjct: 103 FTTELFYGSLRAQGRLDAILTACVDR--PLEEVDPALRDVLRLGAYQLLDMSVAPHAAT- 159

Query: 128 SEYVCIAHDFFYGDEPKFINAVLDKVSRKE 157
           SE V +A          F+NAVL +V  K+
Sbjct: 160 SETVALARAEVGAGGASFVNAVLRRVGEKD 189


>gi|196230011|ref|ZP_03128874.1| sun protein [Chthoniobacter flavus Ellin428]
 gi|196225608|gb|EDY20115.1| sun protein [Chthoniobacter flavus Ellin428]
          Length = 410

 Score = 72.8 bits (178), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 31/150 (20%), Positives = 60/150 (40%), Gaps = 22/150 (14%)

Query: 20  RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79
           R + V AL + +     + EI+                ++    +D  +F     GV+  
Sbjct: 4   RQSCVLALLEWEKGKYFSDEILHTSLE-----------KNPMQPLDRAFFMETFFGVLRN 52

Query: 80  KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139
              +D LI   L E     R+D    ++LR G+ ++    + P    ++E V +      
Sbjct: 53  LSRLDFLIGQ-LREG----RIDPQTRAVLRLGLYQIFHMRTAPHA-AVNESVAL-----G 101

Query: 140 GDEPKFINAVLDKVSRKEEIKRSGCVSAIT 169
           G     +NA+L +  R++E   S  ++A +
Sbjct: 102 GRARGLVNAILRRALREKEALESDLLAASS 131


>gi|170077132|ref|YP_001733770.1| ribosomal RNA small subunit methyltransferase B (rRNA
           (cytosine-C(5)-)-methyltransferase) [Synechococcus sp.
           PCC 7002]
 gi|169884801|gb|ACA98514.1| ribosomal RNA small subunit methyltransferase B (rRNA
           (cytosine-C(5)-)-methyltransferase) [Synechococcus sp.
           PCC 7002]
          Length = 447

 Score = 72.8 bits (178), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 26/142 (18%), Positives = 53/142 (37%), Gaps = 13/142 (9%)

Query: 17  GIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGV 76
             AR  A  AL QI +   + T++  +   ++          S     D      +++G 
Sbjct: 2   SSARQLAFLALRQI-MYHNAYTDVALDRVLHK----------SNLTGSDRALVAELVYGT 50

Query: 77  MDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHD 136
           + R++ +D +I     +     +    L  +L+ G+ +L     +P    ++  V IA  
Sbjct: 51  VRRQKTLDAIIDQLGKK--PIDQQPPDLRVLLQLGLYQLRYLDQIPPSAAVNTSVEIAKT 108

Query: 137 FFYGDEPKFINAVLDKVSRKEE 158
              G     +N  L    R+ +
Sbjct: 109 NKLGQLAGVVNGCLRGYLRQRD 130


>gi|302550113|ref|ZP_07302455.1| ribosomal RNA small subunit methyltransferase B [Streptomyces
           viridochromogenes DSM 40736]
 gi|302467731|gb|EFL30824.1| ribosomal RNA small subunit methyltransferase B [Streptomyces
           viridochromogenes DSM 40736]
          Length = 472

 Score = 72.8 bits (178), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 31/159 (19%), Positives = 59/159 (37%), Gaps = 14/159 (8%)

Query: 1   MTIQDNKKDLKLSHRRGI----ARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELD 56
           M+ Q  +        R       R+ A +AL  +D        ++          D    
Sbjct: 1   MSDQPRRTRPSGKPYRRPKKDPVRILAFEALRAVDERDAYANLVLPPLLRKAREKD---- 56

Query: 57  VESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELI 116
               +   D      +++G + R+   D +I++C+        +D  +  +L  G  +L+
Sbjct: 57  ---DFDARDAALATELVYGTLRRQGTYDAVIATCVDR--PLGEVDPPVLDVLSLGAHQLL 111

Query: 117 ECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSR 155
               +P    +S  V +A         KF+NAVL KV++
Sbjct: 112 GTR-IPTHAAVSATVELARVVLGDGRAKFVNAVLRKVAQ 149


>gi|255311673|ref|ZP_05354243.1| transcription antitermination protein NusB [Chlamydia trachomatis
           6276]
 gi|255317974|ref|ZP_05359220.1| transcription antitermination protein NusB [Chlamydia trachomatis
           6276s]
          Length = 168

 Score = 72.8 bits (178), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 30/141 (21%), Positives = 57/141 (40%), Gaps = 15/141 (10%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           +   R   +QALY ++I       ++S   T           E+     +  +  +    
Sbjct: 21  KQKLRELVLQALYALEIDPEGEDSLVSLLMT-----------EASVSKKNAAYALMFCRA 69

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHS---VPVEVIISEYVC 132
           +   +  +D L+ + +    + +RL +I  +ILR  + E  +      VPV V+I+E   
Sbjct: 70  IRANQPDLDALLDATI-RTTTLARLTIIERNILRMMLFEHQQNQDCCPVPVAVLIAETAR 128

Query: 133 IAHDFFYGDEPKFINAVLDKV 153
           +   F Y +    I AVL  +
Sbjct: 129 LIKKFSYSEGSSLILAVLGSI 149


>gi|318078496|ref|ZP_07985828.1| RNA-binding Sun protein [Streptomyces sp. SA3_actF]
          Length = 685

 Score = 72.8 bits (178), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 27/146 (18%), Positives = 57/146 (39%), Gaps = 10/146 (6%)

Query: 12  LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71
            + R+   R+ A  AL  +D        ++            E   +  +   D      
Sbjct: 16  RAPRKDPVRVLAFDALRAVDERDAYANLVLPALLR-------EAREKGGFDARDAALATE 68

Query: 72  IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
           +++G +  +   D +I++C+        +D  +  +L  G  +L+    +P    +S  V
Sbjct: 69  LVYGTLRGRGTYDAIIAACVDR--PLREVDPPVLDVLSLGAHQLLGTR-IPTHAAVSATV 125

Query: 132 CIAHDFFYGDEPKFINAVLDKVSRKE 157
            +A         +F+NAVL ++SR +
Sbjct: 126 ELARVVLGDGRSRFVNAVLRRISRND 151


>gi|294628319|ref|ZP_06706879.1| conserved hypothetical protein [Streptomyces sp. e14]
 gi|292831652|gb|EFF90001.1| conserved hypothetical protein [Streptomyces sp. e14]
          Length = 335

 Score = 72.8 bits (178), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 30/156 (19%), Positives = 61/156 (39%), Gaps = 12/156 (7%)

Query: 2   TIQDNKKDLKLSHR--RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVES 59
           T +  ++  K   R  +   R+ A  AL  +D        ++            +   + 
Sbjct: 4   TSRRPRRPAKPYRRPQKDPVRILAFDALRAVDERDAYANLVLPPLLR-------KAREKG 56

Query: 60  VYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECH 119
            +   D      +++G + R+   D +I++C+        +D  +  +L  G  +L+   
Sbjct: 57  DFDARDAALATELVYGTLRRQGTYDAIIAACVDR--PLREVDPPVLDVLSLGAHQLLGTR 114

Query: 120 SVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSR 155
            +P    +S  V +A         KF+NAVL KV++
Sbjct: 115 -IPTHAAVSATVELARVVLGDGRAKFVNAVLRKVAQ 149


>gi|169349816|ref|ZP_02866754.1| hypothetical protein CLOSPI_00554 [Clostridium spiroforme DSM 1552]
 gi|169293384|gb|EDS75517.1| hypothetical protein CLOSPI_00554 [Clostridium spiroforme DSM 1552]
          Length = 481

 Score = 72.8 bits (178), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 33/147 (22%), Positives = 56/147 (38%), Gaps = 24/147 (16%)

Query: 18  IARLAAVQALYQIDIIGCSTTEIISEYETYRFCADT--ELDVESVYLHVDLEWFRVIIHG 75
           +AR  A++ L             +  +  + +   T  E    S     D +    I++G
Sbjct: 65  MAREVALEIL-------------LKYHNEHSYLNITLNEYLKNSTLSRNDKDLVTRIVYG 111

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
            +    +++  +   +  K   SR       IL   + +LI    VP   II E V +A 
Sbjct: 112 TVQNMIYLEYQLEPYIKNKKVKSR----EKMILLMSLYQLIFLDKVPEYAIIDEAVKLAK 167

Query: 136 D--FFYGDEPKFINAVLDKVSRKEEIK 160
              F+ G   KF+NA+L    R  + K
Sbjct: 168 KKNFYAG---KFVNAILRNYLRNGKRK 191


>gi|297583987|ref|YP_003699767.1| sun protein [Bacillus selenitireducens MLS10]
 gi|297142444|gb|ADH99201.1| sun protein [Bacillus selenitireducens MLS10]
          Length = 457

 Score = 72.8 bits (178), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 25/116 (21%), Positives = 53/116 (45%), Gaps = 2/116 (1%)

Query: 41  ISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRL 100
           IS+ + Y      E  ++     VD+     I++G +  ++ +D  +S+   ++   ++L
Sbjct: 21  ISKDQAYSHLLLNETVMKKKIKEVDVALLTEIVYGTLQHQRRLDYYVSAFSKKE--LNKL 78

Query: 101 DMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRK 156
           +  +  +LR  V ++     VP   I++E V IA    +      +N +L  V R+
Sbjct: 79  ENWVLILLRLSVYQMHFLDRVPDHAILNEAVRIASKRGHKGIAGMVNGILRSVQRE 134


>gi|329120994|ref|ZP_08249625.1| RNA methyltransferase Sun [Dialister micraerophilus DSM 19965]
 gi|327471156|gb|EGF16610.1| RNA methyltransferase Sun [Dialister micraerophilus DSM 19965]
          Length = 448

 Score = 72.8 bits (178), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 26/138 (18%), Positives = 56/138 (40%), Gaps = 13/138 (9%)

Query: 20  RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79
           RL A Q +Y+           I   + Y   +  ++      L  D      +++G+  +
Sbjct: 12  RLLAYQCIYE-----------IFYRDAYANLSLQKIFKSHKLLSRDKALITELVYGICRK 60

Query: 80  KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139
             ++   I   L+   S +++   +  +L  G+ +LI    +P    ++E V +     +
Sbjct: 61  CNYL-QYIVEKLS-NRSINKIHKSVRILLYLGLYQLIYLDKIPESAAVNETVKLTKKITH 118

Query: 140 GDEPKFINAVLDKVSRKE 157
               +F+NA+L    RK+
Sbjct: 119 QGNVRFVNAILRNFLRKK 136


>gi|13357860|ref|NP_078134.1| transcription termination factor [Ureaplasma parvum serovar 3 str.
           ATCC 700970]
 gi|170761973|ref|YP_001752382.1| transcription antitermination factor NusB [Ureaplasma parvum
           serovar 3 str. ATCC 27815]
 gi|171920328|ref|ZP_02691332.2| transcription antitermination factor NusB [Ureaplasma parvum
           serovar 1 str. ATCC 27813]
 gi|183508752|ref|ZP_02690168.2| transcription antitermination factor NusB [Ureaplasma parvum
           serovar 14 str. ATCC 33697]
 gi|186701937|ref|ZP_02554155.2| transcription antitermination factor NusB [Ureaplasma parvum
           serovar 6 str. ATCC 27818]
 gi|11357059|pir||A82909 transcription termination factor UU300 [imported] - Ureaplasma
           urealyticum
 gi|6899275|gb|AAF30709.1|AE002127_7 transcription termination factor [Ureaplasma parvum serovar 3 str.
           ATCC 700970]
 gi|168827550|gb|ACA32812.1| transcription antitermination factor NusB [Ureaplasma parvum
           serovar 3 str. ATCC 27815]
 gi|171902748|gb|EDT49037.1| transcription antitermination factor NusB [Ureaplasma parvum
           serovar 1 str. ATCC 27813]
 gi|182675685|gb|EDT87590.1| transcription antitermination factor NusB [Ureaplasma parvum
           serovar 14 str. ATCC 33697]
 gi|186700685|gb|EDU18967.1| transcription antitermination factor NusB [Ureaplasma parvum
           serovar 6 str. ATCC 27818]
          Length = 127

 Score = 72.8 bits (178), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 28/134 (20%), Positives = 63/134 (47%), Gaps = 16/134 (11%)

Query: 20  RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79
           R+   Q +Y   I   +    +        CA  + D++  +++V  E+       ++D 
Sbjct: 8   RVKLFQFIYHWLITKKNKPIALK-------CALVDFDLDLNWINV-GEY-------ILDN 52

Query: 80  KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139
            + +  +I   +++ W+F RL  +  ++L +   E +     P ++II + +   H++  
Sbjct: 53  YEQLTKMIKPLISKDWTFERLSYVEQALLLSAYGEYL-VLKTPKKIIIDQTLITTHNYSN 111

Query: 140 GDEPKFINAVLDKV 153
            +  KFINA+LD++
Sbjct: 112 NESYKFINAILDQL 125


>gi|1772501|emb|CAA71351.1| hypothetical protein [Bacillus subtilis subsp. subtilis str. 168]
          Length = 240

 Score = 72.4 bits (177), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 21/142 (14%), Positives = 52/142 (36%), Gaps = 14/142 (9%)

Query: 15  RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74
           ++   R  A++AL +++     +  ++         +D            +      +++
Sbjct: 2   KKTSVRDIALEALIKLEQNQAYSNLLLKSVIKSNELSDQ-----------NRGLLTELVY 50

Query: 75  GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134
           G +  K  +D ++   + +          +  +LR  + ++     +P    I E V IA
Sbjct: 51  GTLQNKIALDYMLKPFINKPQKVK---PWVIQLLRLSLYQMEYLEKIPDRAAIHEAVEIA 107

Query: 135 HDFFYGDEPKFINAVLDKVSRK 156
               +     F+N VL  + R+
Sbjct: 108 KIRGHKGIASFVNGVLRSIQRE 129


>gi|313891936|ref|ZP_07825537.1| ribosomal RNA small subunit methyltransferase B [Dialister
           microaerophilus UPII 345-E]
 gi|313119579|gb|EFR42770.1| ribosomal RNA small subunit methyltransferase B [Dialister
           microaerophilus UPII 345-E]
          Length = 448

 Score = 72.4 bits (177), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 26/138 (18%), Positives = 56/138 (40%), Gaps = 13/138 (9%)

Query: 20  RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79
           RL A Q +Y+           I   + Y   +  ++      L  D      +++G+  +
Sbjct: 12  RLLAYQCIYE-----------IFYRDAYANLSLQKIFKSHKLLSRDKALITELVYGICRK 60

Query: 80  KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139
             ++   I   L+   S +++   +  +L  G+ +LI    +P    ++E V +     +
Sbjct: 61  CNYL-QYIVEKLS-NRSINKIHKSVRILLYLGLYQLIYLDKIPESAAVNETVKLTKKITH 118

Query: 140 GDEPKFINAVLDKVSRKE 157
               +F+NA+L    RK+
Sbjct: 119 QGNVRFVNAILRNFLRKK 136


>gi|320011939|gb|ADW06789.1| Fmu (Sun) domain protein [Streptomyces flavogriseus ATCC 33331]
          Length = 477

 Score = 72.4 bits (177), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 31/156 (19%), Positives = 60/156 (38%), Gaps = 12/156 (7%)

Query: 1   MTIQDNKKDLKLSHR--RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVE 58
           M  Q  ++  K   R  +   R  A + L  +D        ++            +   +
Sbjct: 1   MNDQQRRRPAKPHRRPKKDPVRFLAFEVLRAVDERDAYANLVLPPLL-------KKARAK 53

Query: 59  SVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIEC 118
             +   D      +++G + R+   D ++++C+        +D  +  +L  GV +L+  
Sbjct: 54  GDFEGRDAALATELVYGTLRRQGTYDAIVAACIDR--PLREVDPPVLDVLNMGVHQLLGT 111

Query: 119 HSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVS 154
             +P    +S  V +A         KF+NAVL KVS
Sbjct: 112 R-IPTHAAVSASVELARVVLGEGRAKFVNAVLRKVS 146


>gi|257055599|ref|YP_003133431.1| tRNA/rRNA cytosine-C5-methylase [Saccharomonospora viridis DSM
           43017]
 gi|256585471|gb|ACU96604.1| tRNA/rRNA cytosine-C5-methylase [Saccharomonospora viridis DSM
           43017]
          Length = 484

 Score = 72.4 bits (177), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 33/154 (21%), Positives = 59/154 (38%), Gaps = 14/154 (9%)

Query: 5   DNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHV 64
             K+  +    R  AR AA  AL             ++E + Y      EL  +      
Sbjct: 25  PRKQGPRRPPTRDPARRAAFDAL-----------RAVTERDAYANLILPELLRQRRITGR 73

Query: 65  DLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVE 124
           D      + +G       +D +++ C+  K     +D ++   LR G  +L+    +P  
Sbjct: 74  DAALATELTYGTARATGLLDAIVARCVDRK--LDTVDPVVRDALRLGAYQLL-RTRIPHH 130

Query: 125 VIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEE 158
             ++  V +  +        F+NAVL +VS K+E
Sbjct: 131 AAVASTVDLVREDAGSRVAGFVNAVLRRVSEKDE 164


>gi|73662864|ref|YP_301645.1| tRNA and rRNA cytosine-C5-methylase [Staphylococcus saprophyticus
           subsp. saprophyticus ATCC 15305]
 gi|72495379|dbj|BAE18700.1| putative tRNA and rRNA cytosine-C5-methylase [Staphylococcus
           saprophyticus subsp. saprophyticus ATCC 15305]
          Length = 436

 Score = 72.4 bits (177), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 21/126 (16%), Positives = 49/126 (38%), Gaps = 12/126 (9%)

Query: 35  CSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLT-- 92
            +  +II++ + Y      ++   +     D   +  +++G + RK  +D L+   +   
Sbjct: 13  ETIQDIIND-KAYSNIIINDVLSNNELNRADKGLYTELVYGTLKRKYTLDYLLKPFVQTK 71

Query: 93  -EKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLD 151
            + W        +  +L   + + +    +P   II+E V IA           +N +L 
Sbjct: 72  LKGW--------VRQLLWMSIYQYVYLDKIPEHAIINEAVEIAKYKGGPHNGNVVNGILR 123

Query: 152 KVSRKE 157
            + R +
Sbjct: 124 NIMRSD 129


>gi|302561751|ref|ZP_07314093.1| conserved hypothetical protein [Streptomyces griseoflavus Tu4000]
 gi|302479369|gb|EFL42462.1| conserved hypothetical protein [Streptomyces griseoflavus Tu4000]
          Length = 334

 Score = 72.4 bits (177), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 30/161 (18%), Positives = 63/161 (39%), Gaps = 14/161 (8%)

Query: 1   MTIQDNK--KDLKLSHR--RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELD 56
           M+ Q  +  K  K   R  +   R+ A +AL  +D        ++            +  
Sbjct: 1   MSDQPRRPRKPAKPYRRPKKDPVRILAFEALRAVDERDAYANLVLPPLLR-------KAR 53

Query: 57  VESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELI 116
               +   D      +++G + R+   D ++++C+        +D  +  +L  G  +L+
Sbjct: 54  ENGDFEARDAALATELVYGTLRRQGTYDAVVAACVDR--PLREVDPPVLDVLSLGAHQLL 111

Query: 117 ECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKE 157
               +P    +S  V +A         KF+NAVL K+++ +
Sbjct: 112 GTR-IPTHAAVSATVELARVVLGDGRAKFVNAVLRKIAQDD 151


>gi|329728796|gb|EGG65217.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
           aureus subsp. aureus 21193]
          Length = 435

 Score = 72.4 bits (177), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 25/123 (20%), Positives = 49/123 (39%), Gaps = 6/123 (4%)

Query: 35  CSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEK 94
            +  +I++E   Y      E+  E+    +D   F  I++G + RK  +D  +   +  K
Sbjct: 11  DTIQDILNE-GAYSNLRINEVLSENELNAMDKALFTEIVYGTVKRKYTLDFYLKPFVKTK 69

Query: 95  WSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVS 154
                +   +  +L   + + +    VP   II+E V IA +         +N  L  + 
Sbjct: 70  -----IKAWVRQLLWMSIYQYVYLDKVPNHAIINEAVEIAKERGGYHNGNVVNGFLRTMM 124

Query: 155 RKE 157
           R +
Sbjct: 125 RSD 127


>gi|326407382|gb|ADZ64453.1| ribosomal RNA small subunit methyltransferase B [Lactococcus lactis
           subsp. lactis CV56]
          Length = 424

 Score = 72.4 bits (177), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 32/148 (21%), Positives = 53/148 (35%), Gaps = 22/148 (14%)

Query: 17  GIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGV 76
             AR  A+  L           +  +     R   D+EL        VD  +   +++GV
Sbjct: 3   KNARQTALDVL-----NDIFGNDAYANISLDRNLRDSELST------VDKAFVTALVYGV 51

Query: 77  MDRKQHIDLLISSCLTEK---WSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCI 133
           + +K  ++  I+  L ++   W+          +L   V +++    VP    + E V I
Sbjct: 52  VSKKDLLEWHITPFLKKEPKPWA--------KMLLLLTVYQILFMDKVPTSAAVDEAVKI 103

Query: 134 AHDFFYGDEPKFINAVLDKVSRKEEIKR 161
           A          FINAVL    R E    
Sbjct: 104 AKRRDGQATANFINAVLRNFMRSEHRNE 131


>gi|56964082|ref|YP_175813.1| RNA-binding protein Sun [Bacillus clausii KSM-K16]
 gi|56910325|dbj|BAD64852.1| RNA-binding protein Sun [Bacillus clausii KSM-K16]
          Length = 447

 Score = 72.4 bits (177), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 27/142 (19%), Positives = 53/142 (37%), Gaps = 14/142 (9%)

Query: 15  RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74
            R   R  A+ AL     +     +  S    +    +  LD        D      +++
Sbjct: 2   NRPSVREVALDAL-----LKVEKNQAYSHLLLHSTLTNAGLD------KRDSGLLTELVY 50

Query: 75  GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134
           G + RK+ +D  ++  L       R   +   +LR  V +++    +P   ++ E V IA
Sbjct: 51  GTIARKRTLDYYLAPFLKSGKK--RALWVD-VLLRLSVYQMVFLDRIPDRAVVHEAVTIA 107

Query: 135 HDFFYGDEPKFINAVLDKVSRK 156
           +   +      +N VL  + R+
Sbjct: 108 NKRGHKGISGLVNGVLRSIQRQ 129


>gi|218439986|ref|YP_002378315.1| sun protein [Cyanothece sp. PCC 7424]
 gi|218172714|gb|ACK71447.1| sun protein [Cyanothece sp. PCC 7424]
          Length = 452

 Score = 72.4 bits (177), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 30/162 (18%), Positives = 61/162 (37%), Gaps = 24/162 (14%)

Query: 1   MTIQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESV 60
           MT ++              R  A+  L             I + E Y   A  +    + 
Sbjct: 1   MTFKEKNP-----------RQLALIIL-----------RDIYQKEAYTDLALDQGIKRAD 38

Query: 61  YLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHS 120
             ++D      +++G++ R++ +D +IS   T+K   ++    L  IL  G+ +L     
Sbjct: 39  LGNLDRGLVTELVYGIVRRQRTLDEIISQLGTKK--ANQQPPDLRLILHIGLYQLRYLDQ 96

Query: 121 VPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRS 162
           +P    ++  V +A     G     +N +L +  R +E  + 
Sbjct: 97  IPPSAAVNTSVELAKKNKLGKLSGVVNGILRQYDRIKEQGKD 138


>gi|15673871|ref|NP_268046.1| rRNA methylase [Lactococcus lactis subsp. lactis Il1403]
 gi|12724923|gb|AAK05987.1|AE006418_7 rRNA methylase [Lactococcus lactis subsp. lactis Il1403]
          Length = 424

 Score = 72.4 bits (177), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 32/148 (21%), Positives = 53/148 (35%), Gaps = 22/148 (14%)

Query: 17  GIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGV 76
             AR  A+  L           +  +     R   D+EL        VD  +   +++GV
Sbjct: 3   KNARQTALDVL-----NDIFGNDAYANISLDRNLRDSELST------VDKAFVTALVYGV 51

Query: 77  MDRKQHIDLLISSCLTEK---WSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCI 133
           + +K  ++  I+  L ++   W+          +L   V +++    VP    + E V I
Sbjct: 52  VSKKDLLEWHITPFLKKEPKPWA--------KMLLLLTVYQILFMDKVPTSAAVDEAVKI 103

Query: 134 AHDFFYGDEPKFINAVLDKVSRKEEIKR 161
           A          FINAVL    R E    
Sbjct: 104 AKRRDGQATANFINAVLRNFMRSEHRNE 131


>gi|219669868|ref|YP_002460303.1| sun protein [Desulfitobacterium hafniense DCB-2]
 gi|219540128|gb|ACL21867.1| sun protein [Desulfitobacterium hafniense DCB-2]
          Length = 453

 Score = 72.4 bits (177), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 28/136 (20%), Positives = 50/136 (36%), Gaps = 15/136 (11%)

Query: 18  IARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVM 77
            +R  AVQ L            I  E           L   S       +   ++++G +
Sbjct: 5   TSRALAVQIL----------RRIEEEKAYANLVMQKALHDLSDPRE--RQLATLLVNGTL 52

Query: 78  DRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDF 137
             +  +D  +   L +    S+L   +  ILR   L+++    +P  V I+E V +    
Sbjct: 53  KHRLTLDYALRRHLRK--PLSQLPHEVRWILRISALQILYLSRIPAAVAINEGVELTKK- 109

Query: 138 FYGDEPKFINAVLDKV 153
             G     +N+VL +V
Sbjct: 110 QQGKYTSLVNSVLRRV 125


>gi|281492501|ref|YP_003354481.1| 16S rRNA m(5)C 967 methyltransferase [Lactococcus lactis subsp.
           lactis KF147]
 gi|281376165|gb|ADA65656.1| 16S rRNA m(5)C 967 methyltransferase [Lactococcus lactis subsp.
           lactis KF147]
          Length = 424

 Score = 72.1 bits (176), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 32/148 (21%), Positives = 53/148 (35%), Gaps = 22/148 (14%)

Query: 17  GIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGV 76
             AR  A+  L           +  +     R   D+EL        VD  +   +++GV
Sbjct: 3   KNARQTALDVL-----NDIFGNDAYANISLDRNLRDSELST------VDKAFVTALVYGV 51

Query: 77  MDRKQHIDLLISSCLTEK---WSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCI 133
           + +K  ++  I+  L ++   W+          +L   V +++    VP    + E V I
Sbjct: 52  VSKKDLLEWHITPFLKKEPKPWA--------KMLLLLTVYQILFMDKVPTSAAVDEAVKI 103

Query: 134 AHDFFYGDEPKFINAVLDKVSRKEEIKR 161
           A          FINAVL    R E    
Sbjct: 104 AKRRDGQATANFINAVLRNFMRSEHRNE 131


>gi|227495439|ref|ZP_03925755.1| 16S rRNA m(5)C 967 methyltransferase [Actinomyces coleocanis DSM
           15436]
 gi|226830986|gb|EEH63369.1| 16S rRNA m(5)C 967 methyltransferase [Actinomyces coleocanis DSM
           15436]
          Length = 487

 Score = 72.1 bits (176), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 27/146 (18%), Positives = 58/146 (39%), Gaps = 14/146 (9%)

Query: 4   QDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLH 63
           +++ +      R   AR  A + L ++D+       ++ +  T           E+    
Sbjct: 15  RNDSRGRSKQARVSKARTVAFETLLKVDVEDAYANIVLPKAIT-----------EANLDS 63

Query: 64  VDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPV 123
            D  +   +++G +     +D +I  C+ +K   + LD  + +ILR    +++    VP 
Sbjct: 64  RDASFATELVYGTLRNLARVDWVIEQCMPKK--IADLDPEVRAILRLTAHQILHLR-VPD 120

Query: 124 EVIISEYVCIAHDFFYGDEPKFINAV 149
              ++E V +          KF+N V
Sbjct: 121 HAAVAESVELTKHVAGFGVEKFVNGV 146


>gi|298492855|ref|YP_003723032.1| sun protein ['Nostoc azollae' 0708]
 gi|298234773|gb|ADI65909.1| sun protein ['Nostoc azollae' 0708]
          Length = 446

 Score = 72.1 bits (176), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 27/139 (19%), Positives = 53/139 (38%), Gaps = 14/139 (10%)

Query: 20  RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79
           R  A  AL   ++   +  ++  +    +F               D      +++G + R
Sbjct: 5   RQLAFIAL--KEVHKGAYADVALDRVLQKF----------KLPDNDRRLMTELVYGSVRR 52

Query: 80  KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139
           ++ +D LI    T+K         L +IL  G  +L     +PV   ++  V +A +  +
Sbjct: 53  QRTLDTLIDKLATKKAHQQ--PPELRTILHLGFYQLRYQEKIPVSAAVNTTVELAKENGF 110

Query: 140 GDEPKFINAVLDKVSRKEE 158
                F+N +L +  R  E
Sbjct: 111 SSLTGFVNGLLRQYLRLIE 129


>gi|302848840|ref|XP_002955951.1| hypothetical protein VOLCADRAFT_42105 [Volvox carteri f.
           nagariensis]
 gi|300258677|gb|EFJ42911.1| hypothetical protein VOLCADRAFT_42105 [Volvox carteri f.
           nagariensis]
          Length = 426

 Score = 72.1 bits (176), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 23/95 (24%), Positives = 45/95 (47%), Gaps = 4/95 (4%)

Query: 65  DLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVE 124
           D    + ++ GV   ++ +D +++  LT++     ++  +  +LR GV EL E    P  
Sbjct: 2   DQRLVKELVAGVTRLRRRLDFVVA-NLTQQTPAD-MESGVRQVLRLGVYELTERRLAPY- 58

Query: 125 VIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEI 159
             ++E+V +A          F+N VL   +R+ E 
Sbjct: 59  -ALNEHVQLAKVVSGPGAGSFVNGVLRSAARQVEA 92


>gi|281412717|ref|YP_003346796.1| sun protein [Thermotoga naphthophila RKU-10]
 gi|281373820|gb|ADA67382.1| sun protein [Thermotoga naphthophila RKU-10]
          Length = 431

 Score = 72.1 bits (176), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 30/123 (24%), Positives = 59/123 (47%), Gaps = 8/123 (6%)

Query: 40  IISEYETYRFCADTELDVESVYLH-VDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFS 98
           ++ +YE  +F    ++D    +L   D  +F+ ++ GV+ +++ +D  I+  L +K    
Sbjct: 12  LLRKYEKEKFILREDVDSVLSFLDDKDRRFFKELVWGVVRKEELLDWYINQLLKKK---- 67

Query: 99  RLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEE 158
            +   +   LR G  +L+  +SVP    +SE V +       +  K +NAVL ++    E
Sbjct: 68  DIPPAVRVALRMGAYQLLFMNSVPDYAAVSETVKLVK---SENFKKLVNAVLRRLRTVPE 124

Query: 159 IKR 161
            K 
Sbjct: 125 PKE 127


>gi|76789577|ref|YP_328663.1| transcription antitermination protein NusB [Chlamydia trachomatis
           A/HAR-13]
 gi|237803264|ref|YP_002888458.1| transcription antitermination protein NusB [Chlamydia trachomatis
           B/Jali20/OT]
 gi|237805185|ref|YP_002889339.1| transcription antitermination protein NusB [Chlamydia trachomatis
           B/TZ1A828/OT]
 gi|255349237|ref|ZP_05381244.1| transcription antitermination protein NusB [Chlamydia trachomatis
           70]
 gi|255503774|ref|ZP_05382164.1| transcription antitermination protein NusB [Chlamydia trachomatis
           70s]
 gi|255507455|ref|ZP_05383094.1| transcription antitermination protein NusB [Chlamydia trachomatis
           D(s)2923]
 gi|119390756|sp|Q3KKK7|NUSB_CHLTA RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|76168107|gb|AAX51115.1| N utilization substance protein B [Chlamydia trachomatis A/HAR-13]
 gi|231273485|emb|CAX10401.1| Antitermination protein [Chlamydia trachomatis B/TZ1A828/OT]
 gi|231274498|emb|CAX11294.1| Antitermination protein [Chlamydia trachomatis B/Jali20/OT]
 gi|289525878|emb|CBJ15360.1| Antitermination protein [Chlamydia trachomatis Sweden2]
 gi|296435464|gb|ADH17642.1| transcription antitermination protein NusB [Chlamydia trachomatis
           E/150]
 gi|296439181|gb|ADH21334.1| transcription antitermination protein NusB [Chlamydia trachomatis
           E/11023]
          Length = 168

 Score = 72.1 bits (176), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 29/141 (20%), Positives = 57/141 (40%), Gaps = 15/141 (10%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           +   R   +QALY ++I       ++S   T           E+     +  +  +    
Sbjct: 21  KQKLRELVLQALYALEIDPEGEDSLVSLLMT-----------EASVSKKNAAYALMFCRA 69

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHS---VPVEVIISEYVC 132
           +   +  +D L+ + +    + +RL +I  +ILR  + E  +      VPV ++I+E   
Sbjct: 70  IRANQPDLDALLDATI-RTTTLARLTIIERNILRMMLFEHQQNQDCCPVPVAILIAETTR 128

Query: 133 IAHDFFYGDEPKFINAVLDKV 153
           +   F Y +    I AVL  +
Sbjct: 129 LIKKFSYSEGSSLILAVLGSI 149


>gi|212639615|ref|YP_002316135.1| rRNA cytosine-C5-methylase [Anoxybacillus flavithermus WK1]
 gi|212561095|gb|ACJ34150.1| rRNA cytosine-C5-methylase [Anoxybacillus flavithermus WK1]
          Length = 446

 Score = 72.1 bits (176), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 18/121 (14%), Positives = 44/121 (36%), Gaps = 5/121 (4%)

Query: 36  STTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKW 95
                I     Y   +   +   +     D+     +++G + R+  +D  +   +    
Sbjct: 10  DVLIDIERKRAYSNLSLHHVIETNELSAQDVALLTELVYGTIQRRDTLDYYLQPFIKGN- 68

Query: 96  SFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSR 155
               ++  +  +LR  + ++I    +P   ++ E V IA    +      +N +L  V R
Sbjct: 69  ----IEPWVRLLLRMSLYQMIYLDRIPDRAVLFEAVEIAKRRGHRGIASLVNGILRSVQR 124

Query: 156 K 156
           +
Sbjct: 125 Q 125


>gi|313901450|ref|ZP_07834907.1| sun protein [Thermaerobacter subterraneus DSM 13965]
 gi|313468278|gb|EFR63735.1| sun protein [Thermaerobacter subterraneus DSM 13965]
          Length = 488

 Score = 72.1 bits (176), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 22/99 (22%), Positives = 38/99 (38%), Gaps = 2/99 (2%)

Query: 57  VESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELI 116
             S     +      + +GV  R+  +D  ++          RLD  +   LR G  +L 
Sbjct: 68  EGSGLPARERALATELAYGVARRQGSLDWALARWARR--PPERLDPPVRVALRLGAYQLW 125

Query: 117 ECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSR 155
               +P    ++E V +      G    F+NAVL + +R
Sbjct: 126 HLDRIPDHAAVAESVELVRRHGPGYAAGFVNAVLRRAAR 164


>gi|26553613|ref|NP_757547.1| transcription termination factor N-utilization substance protein B
           [Mycoplasma penetrans HF-2]
 gi|26453619|dbj|BAC43951.1| transcription termination factor N-utilization substance protein B
           [Mycoplasma penetrans HF-2]
          Length = 149

 Score = 72.1 bits (176), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 21/77 (27%), Positives = 37/77 (48%), Gaps = 1/77 (1%)

Query: 77  MDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHD 136
           +  KQ+I   I   L E+W   RL+ +  SI+     E      +  ++II + +  +  
Sbjct: 71  IKNKQNIKSRIKPLLKEEWEIDRLNKVDLSIIMEAFCEF-HTLDIDRKIIIDQAIVTSKR 129

Query: 137 FFYGDEPKFINAVLDKV 153
           +   +  KFIN +LDK+
Sbjct: 130 YSENNSYKFINFILDKL 146


>gi|15644260|ref|NP_229312.1| sun protein [Thermotoga maritima MSB8]
 gi|4982078|gb|AAD36579.1|AE001799_11 sun protein [Thermotoga maritima MSB8]
          Length = 431

 Score = 72.1 bits (176), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 30/123 (24%), Positives = 60/123 (48%), Gaps = 8/123 (6%)

Query: 40  IISEYETYRFCADTELDVESVYLH-VDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFS 98
           ++ +YE  +F +  ++D    +L   D  +F+ ++ GV+ +++ +D  I+  L +K    
Sbjct: 12  LLRKYEKEKFISREDVDSVLSFLDDRDRRFFKELVWGVVRKEELLDWYINQLLKKK---- 67

Query: 99  RLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEE 158
            +   +   LR G  +L+  +SVP    +SE V +       +  K +NAVL ++    E
Sbjct: 68  DIPPAVRVALRMGAYQLLFMNSVPDYAAVSETVKLVK---NENFKKLVNAVLRRLRTVPE 124

Query: 159 IKR 161
            K 
Sbjct: 125 PKE 127


>gi|308190107|ref|YP_003923038.1| transcription termination factor [Mycoplasma fermentans JER]
 gi|307624849|gb|ADN69154.1| transcription termination factor [Mycoplasma fermentans JER]
          Length = 139

 Score = 72.1 bits (176), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 33/144 (22%), Positives = 58/144 (40%), Gaps = 21/144 (14%)

Query: 14  HRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVII 73
             R   RL  +  LY+ +++                  +   D ES   +        I 
Sbjct: 2   QNRRQFRLGIINVLYRYELMDQKIN------------VNELFDSESNLSNEQFSHLEKI- 48

Query: 74  HGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCI 133
                        +S  L E WS+ R+  ++ +IL  G  EL+   S+  ++II+E V I
Sbjct: 49  ---AKNYDFYKKAVSQFLKEGWSWERISPLIRAILINGTHELM---SIEPKIIINESVEI 102

Query: 134 AHDFFYGDE--PKFINAVLDKVSR 155
              +F  ++   K +NA+L+KV +
Sbjct: 103 TKYYFEDEKNFYKMVNAILEKVYK 126


>gi|148270410|ref|YP_001244870.1| sun protein [Thermotoga petrophila RKU-1]
 gi|147735954|gb|ABQ47294.1| sun protein [Thermotoga petrophila RKU-1]
          Length = 431

 Score = 71.7 bits (175), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 30/123 (24%), Positives = 59/123 (47%), Gaps = 8/123 (6%)

Query: 40  IISEYETYRFCADTELDVESVYLH-VDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFS 98
           ++ +YE  +F    ++D    +L   D  +F+ ++ GV+ +++ +D  I+  L +K    
Sbjct: 12  LLRKYEKEKFILREDVDSVLSFLDDKDRRFFKELVWGVVRKEELLDWYINQLLKKK---- 67

Query: 99  RLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEE 158
            +   +   LR G  +L+  +SVP    +SE V +       +  K +NAVL ++    E
Sbjct: 68  DIPPAVRVALRMGAYQLLFMNSVPDYAAVSETVKLVK---NENFKKLVNAVLRRLRTVPE 124

Query: 159 IKR 161
            K 
Sbjct: 125 PKE 127


>gi|218961232|ref|YP_001741007.1| putative 16S rRNA m5C967 methyltransferase,
           S-adenosyl-L-methionine-dependent [Candidatus
           Cloacamonas acidaminovorans]
 gi|167729889|emb|CAO80801.1| putative 16S rRNA m5C967 methyltransferase,
           S-adenosyl-L-methionine-dependent [Candidatus
           Cloacamonas acidaminovorans]
          Length = 438

 Score = 71.7 bits (175), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 23/98 (23%), Positives = 46/98 (46%), Gaps = 1/98 (1%)

Query: 62  LHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSV 121
              D   F  ++ GV+     +D ++   + +K  ++  D+ +  +L  G+ +L+  +S+
Sbjct: 35  AGEDPALFYNLVKGVIKLYLKLDYILQQYVDKK-KYTDTDIKIKVLLYMGLYQLLYLNSI 93

Query: 122 PVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEI 159
           P    ++E V +A   F      F+NAVL    R  E+
Sbjct: 94  PDYAAVNETVELAKTLFNPQVADFVNAVLRNYLRNPEV 131


>gi|300934517|ref|ZP_07149773.1| putative tRNA and rRNA cytosine-C5-methylase [Corynebacterium
           resistens DSM 45100]
          Length = 551

 Score = 71.7 bits (175), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 22/136 (16%), Positives = 49/136 (36%), Gaps = 14/136 (10%)

Query: 20  RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79
           R   +Q L             +++   +   A  +   +      D  +   + +G +  
Sbjct: 84  RDLVLQVL-----------RDVTQEGAFANLALPKALKQERLTGRDAAFATELTYGTLRA 132

Query: 80  KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139
              +D +I+         +++D ++  ILR G  +++    V     +   V +A     
Sbjct: 133 LGLLDAVIAKA--AGRPVAKIDSMVLDILRLGAYQVL-RTRVDDHAAVDTAVNLAKANGE 189

Query: 140 GDEPKFINAVLDKVSR 155
           G    F+N VL  ++R
Sbjct: 190 GKASGFVNGVLRTITR 205


>gi|302824271|ref|XP_002993780.1| hypothetical protein SELMODRAFT_137586 [Selaginella moellendorffii]
 gi|300138376|gb|EFJ05146.1| hypothetical protein SELMODRAFT_137586 [Selaginella moellendorffii]
          Length = 476

 Score = 71.7 bits (175), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 25/87 (28%), Positives = 47/87 (54%), Gaps = 2/87 (2%)

Query: 73  IHGVMDRKQHIDLLISSCLTEKW-SFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
           + G++  K+++D +IS+   +    F R++ IL  +LR G  EL++   VP   +++E V
Sbjct: 68  VAGIVRWKKYLDYVISNVYDKDQNEFERMEPILKQVLRLGAYELLK-LEVPAYAVVNEAV 126

Query: 132 CIAHDFFYGDEPKFINAVLDKVSRKEE 158
            +A+        K  NA+L  V+  +E
Sbjct: 127 KLANAASRAGAGKLANALLRAVASHKE 153


>gi|237735904|ref|ZP_04566385.1| SUN protein [Mollicutes bacterium D7]
 gi|229381649|gb|EEO31740.1| SUN protein [Coprobacillus sp. D7]
          Length = 417

 Score = 71.7 bits (175), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 34/154 (22%), Positives = 59/154 (38%), Gaps = 28/154 (18%)

Query: 18  IARLAAVQAL--YQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           +AR  A+  L  YQ +               Y      +   +S+    D +    I++G
Sbjct: 1   MARTTALDVLIKYQNEQS-------------YLNITLNDYLEKSLLSRNDKDLATRIVYG 47

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
            +  K +++  ++  +  K   +R       IL   + +LI    VP   +I E V +A 
Sbjct: 48  TIQNKLYLEYQLAPYIQGKKIKNR----EKMILLMSLYQLIFLDKVPDYAVIDEAVRLAK 103

Query: 136 DFFYGDEPKFINAVLDKVSR--------KEEIKR 161
                   KF+NA+L    R        K+E+KR
Sbjct: 104 K-RDNFAGKFVNAILRNFLRNGKCEIDEKDELKR 136


>gi|168704061|ref|ZP_02736338.1| Fmu, rRNA SAM-dependent methyltransferase:Nop2p [Gemmata
           obscuriglobus UQM 2246]
          Length = 465

 Score = 71.3 bits (174), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 20/104 (19%), Positives = 35/104 (33%), Gaps = 18/104 (17%)

Query: 59  SVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCL--------TEKWSFSRLDMILCSILRA 110
           +     D  +   ++ GV+ R   +D L+   +           W            LR 
Sbjct: 34  ANLSPQDRRFVTQLVFGVIRRGGTLDALLKPFIHLPTHAVQDRVWDL----------LRL 83

Query: 111 GVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVS 154
           G  +L     VP    + E V +A          F+N VL +++
Sbjct: 84  GAFQLTFLTHVPKHAAVHETVELAEHVGAPKAKGFVNGVLRRIA 127


>gi|315604186|ref|ZP_07879252.1| ribosomal RNA small subunit methyltransferase B [Actinomyces sp.
           oral taxon 180 str. F0310]
 gi|315313892|gb|EFU61943.1| ribosomal RNA small subunit methyltransferase B [Actinomyces sp.
           oral taxon 180 str. F0310]
          Length = 490

 Score = 71.3 bits (174), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 28/115 (24%), Positives = 54/115 (46%), Gaps = 3/115 (2%)

Query: 54  ELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVL 113
           +  +   +   D  +   ++HG +     +D +I+  +    S S+LD  +  +LR G  
Sbjct: 47  QARLHGHFSDRDAAFASELVHGTLRAMGWLDWVIARHVDR--SLSQLDPRVLVLLRVGAH 104

Query: 114 ELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRSGCVSAI 168
           +L++   VP    +S  V +A +       +FINAVL  ++R+   +R   + AI
Sbjct: 105 QLLDMR-VPDHAAVSATVDVAREHLTDGPVRFINAVLRSITREGPGEREAALEAI 158


>gi|167757026|ref|ZP_02429153.1| hypothetical protein CLORAM_02575 [Clostridium ramosum DSM 1402]
 gi|167703201|gb|EDS17780.1| hypothetical protein CLORAM_02575 [Clostridium ramosum DSM 1402]
          Length = 417

 Score = 71.3 bits (174), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 34/154 (22%), Positives = 59/154 (38%), Gaps = 28/154 (18%)

Query: 18  IARLAAVQAL--YQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           +AR  A+  L  YQ +               Y      +   +S+    D +    I++G
Sbjct: 1   MARTTALDVLIKYQNEQS-------------YLNITLNDYLEKSLLSRNDKDLATRIVYG 47

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
            +  K +++  ++  +  K   +R       IL   + +LI    VP   +I E V +A 
Sbjct: 48  TIQNKLYLEYQLAPYIQGKKIKNR----EKMILLMSLYQLIFLDKVPDYAVIDEAVRLAK 103

Query: 136 DFFYGDEPKFINAVLDKVSR--------KEEIKR 161
                   KF+NA+L    R        K+E+KR
Sbjct: 104 K-RDNFAGKFVNAILRNFLRNGKCEIDEKDELKR 136


>gi|319777409|ref|YP_004137060.1| transcription termination factor [Mycoplasma fermentans M64]
 gi|238810315|dbj|BAH70105.1| hypothetical protein [Mycoplasma fermentans PG18]
 gi|318038484|gb|ADV34683.1| Transcription termination factor [Mycoplasma fermentans M64]
          Length = 139

 Score = 71.3 bits (174), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 33/144 (22%), Positives = 58/144 (40%), Gaps = 21/144 (14%)

Query: 14  HRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVII 73
             R   RL  +  LY+ +++                  +   D ES   +        I 
Sbjct: 2   QNRRQFRLGIINVLYRYELMDQKIN------------VNELFDSESNLSNEQFSHLEKI- 48

Query: 74  HGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCI 133
                        +S  L E WS+ R+  ++ +IL  G  EL+   S+  ++II+E V I
Sbjct: 49  ---AKNYDFYKKAVSQFLKEGWSWERISPLIRAILINGAHELM---SIEPKIIINESVEI 102

Query: 134 AHDFFYGDE--PKFINAVLDKVSR 155
              +F  ++   K +NA+L+KV +
Sbjct: 103 TKYYFEDEKNFYKMVNAILEKVYK 126


>gi|139436886|ref|ZP_01771046.1| Hypothetical protein COLAER_00017 [Collinsella aerofaciens ATCC
           25986]
 gi|133776533|gb|EBA40353.1| Hypothetical protein COLAER_00017 [Collinsella aerofaciens ATCC
           25986]
          Length = 466

 Score = 71.3 bits (174), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 28/142 (19%), Positives = 50/142 (35%), Gaps = 16/142 (11%)

Query: 17  GIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGV 76
             AR  A+  L + D  G    +++S   + +                D  +   +  GV
Sbjct: 5   SPARKLALDVLMEADRRGMYARDVLSSRASAKAID-----------QRDSAFAARLALGV 53

Query: 77  MDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHD 136
              +  +D L+   L +     ++   +   LR    E++  H  P  V +S+ V +   
Sbjct: 54  AATQGILDELLDQFLDK---PKKVAPRVRMALRISAFEMLYLH-TPGRVAVSQGVELVRS 109

Query: 137 FFYGDEPKFINAVLDKVSRKEE 158
                     NAVL KV+   E
Sbjct: 110 -GAKSAAGLANAVLHKVADNVE 130


>gi|237785571|ref|YP_002906276.1| putative tRNA and rRNA cytosine-C5-methylase [Corynebacterium
           kroppenstedtii DSM 44385]
 gi|237758483|gb|ACR17733.1| putative tRNA and rRNA cytosine-C5-methylase [Corynebacterium
           kroppenstedtii DSM 44385]
          Length = 524

 Score = 71.3 bits (174), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 32/161 (19%), Positives = 63/161 (39%), Gaps = 16/161 (9%)

Query: 2   TIQDNKKDLKLSHR--RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVES 59
           +   NK + K +    R + R  A QAL+++D        I+             L  E 
Sbjct: 60  SSGGNKPNRKPAREHHRDLPRYVAWQALFRVDTENAFGNIIL-----------PSLMKEY 108

Query: 60  VYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECH 119
                D  +   + +G +  +  +D +I  C +       +D  + ++LR G  +L+   
Sbjct: 109 GLSGRDAAFTTELGYGSLRAQGLVDAVIGECSSR--PLEAIDPAVIAVLRLGTYQLLRMR 166

Query: 120 SVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIK 160
            V     ++  V +  +        F+NAVL  V+++ E +
Sbjct: 167 -VGNHAAVNTSVDLCQEVDKPKAKGFVNAVLHSVAQRTESE 206


>gi|89895438|ref|YP_518925.1| hypothetical protein DSY2692 [Desulfitobacterium hafniense Y51]
 gi|89334886|dbj|BAE84481.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 453

 Score = 71.3 bits (174), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 28/136 (20%), Positives = 50/136 (36%), Gaps = 15/136 (11%)

Query: 18  IARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVM 77
            +R  AVQ L            I  E           L   S       +   ++++G +
Sbjct: 5   TSRALAVQIL----------QRIEEEKAYANLVMQKSLHDLSDPRE--RQLTTLLVNGTL 52

Query: 78  DRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDF 137
             +  +D  +   L +    S+L   +  ILR   L+++    +P  V I+E V +    
Sbjct: 53  KHRLTLDYALRRHLRK--PLSQLPREVRWILRISALQVLYLSRIPAAVAINEGVELTKK- 109

Query: 138 FYGDEPKFINAVLDKV 153
             G     +N+VL +V
Sbjct: 110 QQGKYTSLVNSVLRRV 125


>gi|84619221|emb|CAJ42345.1| hypothetical Sun-family protein [Streptomyces steffisburgensis]
          Length = 475

 Score = 71.3 bits (174), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 30/159 (18%), Positives = 59/159 (37%), Gaps = 11/159 (6%)

Query: 1   MTIQDNKKDLKLSHRRGI----ARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELD 56
           M+ Q  +        R       R+ A +AL  +D        ++            E +
Sbjct: 1   MSDQPRRPRSSGKPYRRPKKDPVRILAFEALRAVDERDAYANLVLPPLLRKA----REKE 56

Query: 57  VESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELI 116
               +   D      +++G +  +   D +++SC+        +D  +  +L  G  +L+
Sbjct: 57  GPEKFDARDAALATELVYGTLRWQGTYDAVLASCVDR--PLGDVDPPVLDVLSLGAHQLL 114

Query: 117 ECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSR 155
               +P    +S  V +A         KF+NAVL KV++
Sbjct: 115 GTR-IPTHAAVSATVELARVVLGDGRAKFVNAVLRKVAQ 152


>gi|225874679|ref|YP_002756138.1| putative ribosomal RNA small subunit methyltransferase B
           [Acidobacterium capsulatum ATCC 51196]
 gi|225792848|gb|ACO32938.1| putative ribosomal RNA small subunit methyltransferase B
           [Acidobacterium capsulatum ATCC 51196]
          Length = 440

 Score = 71.3 bits (174), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 26/135 (19%), Positives = 49/135 (36%), Gaps = 14/135 (10%)

Query: 19  ARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMD 78
           AR  A   L ++      + E++   +     A             D      ++ G + 
Sbjct: 5   ARRVAFDLLQRMATSDAHSDELLRTMKVNALAAQ------------DRNLVTTLVLGTLR 52

Query: 79  RKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFF 138
            +  +D ++   LT      RL   + + LR G  +L+    VP   ++++ V +     
Sbjct: 53  WQPALDQILLQFLTR--PDQRLSEPVRAALRLGAFQLLHLDRVPPHAVLNDSVELVKLSN 110

Query: 139 YGDEPKFINAVLDKV 153
                  +NAVL KV
Sbjct: 111 EAYATGLVNAVLRKV 125


>gi|41407232|ref|NP_960068.1| Fmu [Mycobacterium avium subsp. paratuberculosis K-10]
 gi|41395583|gb|AAS03451.1| Fmu [Mycobacterium avium subsp. paratuberculosis K-10]
          Length = 464

 Score = 71.3 bits (174), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 33/150 (22%), Positives = 58/150 (38%), Gaps = 17/150 (11%)

Query: 12  LSHRRGI---ARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEW 68
            ++RR     AR AA + L             +SE + Y   A   L  E   +  D  +
Sbjct: 9   RANRRRPLDPARAAAFEVL-----------RAVSERDAYANLALPALLRERGIIGRDAAF 57

Query: 69  FRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIIS 128
              + +G    +  +D +I +          +D +L  +LR G  +L+    V     +S
Sbjct: 58  ATELTYGTCRTRGLLDAVIGAA--AGRPPEAIDPVLLDLLRLGTYQLL-RTRVDAHAAVS 114

Query: 129 EYVCIAHDFFYGDEPKFINAVLDKVSRKEE 158
             V  A   F      F+N VL +++ ++E
Sbjct: 115 TTVEQAAIEFDSARAGFVNGVLRRIAGRDE 144


>gi|310819442|ref|YP_003951800.1| ribosomal RNA small subunit methyltransferase b [Stigmatella
           aurantiaca DW4/3-1]
 gi|309392514|gb|ADO69973.1| Ribosomal RNA small subunit methyltransferase B [Stigmatella
           aurantiaca DW4/3-1]
          Length = 438

 Score = 71.3 bits (174), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 29/136 (21%), Positives = 48/136 (35%), Gaps = 13/136 (9%)

Query: 19  ARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMD 78
           AR  A+Q L            + +         DT L         D      + +G   
Sbjct: 3   ARTLAIQVL----------ARVRATDAYLNVVLDTALSEAPPRDARDTALATELAYGTTR 52

Query: 79  RKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFF 138
           R+  +D  I+     K     ++  + + LR G  +L     VP    ++E V    D  
Sbjct: 53  RQLALDYAITRFADRK--LDAMEDRVLAALRIGAYQLFYTR-VPARAAVAETVQALKDLG 109

Query: 139 YGDEPKFINAVLDKVS 154
            G    F+NA+L K++
Sbjct: 110 VGRAAGFVNAILRKLA 125


>gi|300781122|ref|ZP_07090976.1| RNA methyltransferase Sun [Corynebacterium genitalium ATCC 33030]
 gi|300532829|gb|EFK53890.1| RNA methyltransferase Sun [Corynebacterium genitalium ATCC 33030]
          Length = 486

 Score = 71.3 bits (174), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 29/162 (17%), Positives = 57/162 (35%), Gaps = 22/162 (13%)

Query: 2   TIQDNKKDLKLSHRR--------GIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADT 53
           + Q   K    + +R          AR AA  A+ +++        ++ +    R     
Sbjct: 22  SRQGKPKQRHNTQKRPQAHSRIGDAAREAAFDAVLRVETEDAFGNLVLPQILRERKVK-- 79

Query: 54  ELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVL 113
                      D  +   + +G +     +D +I+ C +     + LD  + + LR G  
Sbjct: 80  ---------GRDAAFATELAYGTLRTLGVLDAVIAECSSR--PLTELDPAVLTALRLGTY 128

Query: 114 ELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSR 155
           +L+    V     +   V +A     G    F+N +L  V+R
Sbjct: 129 QLL-MTRVDDHAAVDTSVRLAEAAGQGKAKGFVNGILRTVAR 169


>gi|295109189|emb|CBL23142.1| ribosomal RNA small subunit methyltransferase RsmB [Ruminococcus
           obeum A2-162]
          Length = 450

 Score = 71.3 bits (174), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 23/120 (19%), Positives = 47/120 (39%), Gaps = 2/120 (1%)

Query: 39  EIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFS 98
           +I  E E         L         +  +   +  G ++ +  ID +I+S    K    
Sbjct: 17  QINEEGEHSHIAIRNALSKYQFLPKQERAFITRVCEGTLEYRILIDYIINSF--SKIPVD 74

Query: 99  RLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEE 158
           ++   +  ILR+ + ++     VP   + +E V +A    + +   F+N VL   +R+  
Sbjct: 75  KMKAPIREILRSAIYQMKFMDRVPDSAVCNEAVKLAQKKGFYNLKPFVNGVLRTAARQMN 134


>gi|226503425|ref|NP_001146234.1| hypothetical protein LOC100279806 [Zea mays]
 gi|219886309|gb|ACL53529.1| unknown [Zea mays]
          Length = 174

 Score = 71.3 bits (174), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 29/138 (21%), Positives = 52/138 (37%), Gaps = 19/138 (13%)

Query: 34  GCSTTEIISEYETYRFCADTELDVES-----------VYLHVDLEWFRVIIHGVM----D 78
           G    E+ +E E  +  +  + D  +           VY +  L   R ++  V      
Sbjct: 26  GGGPLEVGTEQEAEKLASQNDKDSANEADVLSAPPKLVYNNYVLRLSRELLVAVASGWDK 85

Query: 79  RKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFF 138
               ID +I     ++   +R+  +   IL   + E+      P +V+I+E V +A  F 
Sbjct: 86  HVVIIDKIIPQAWKDE-PVARI--LELCILHIAMAEM-ASKGTPHKVVINEAVDLAKRFC 141

Query: 139 YGDEPKFINAVLDKVSRK 156
            G  P+ IN  L    + 
Sbjct: 142 DGGAPRVINGCLRTFVKD 159


>gi|269114895|ref|YP_003302658.1| N utilization NusB-like protein [Mycoplasma hominis]
 gi|268322520|emb|CAX37255.1| N utilization substance protein B homolog(Protein nusB) [Mycoplasma
           hominis ATCC 23114]
          Length = 157

 Score = 71.3 bits (174), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 32/141 (22%), Positives = 60/141 (42%), Gaps = 21/141 (14%)

Query: 18  IARLAAVQALYQIDI--IGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
            AR+  +  +YQ ++     S  EI+      +  A+    ++ +    D+  F  I   
Sbjct: 24  KARMHIINCIYQSELFNKNLSIQEILENCGENQLNANEIESLKIIEAKYDV--FTRIAK- 80

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
                          ++E W ++R+  +  +I+  G  EL+        V+I+E V I+ 
Sbjct: 81  -------------KFISEDWEWNRILPLSRAIIIYGEYELLFND---PRVVINEMVNISK 124

Query: 136 DFFYGDEPKFINAVLDKVSRK 156
            +   ++ KFIN VLD VS+ 
Sbjct: 125 IYSPNNDYKFINKVLDLVSKN 145


>gi|23098962|ref|NP_692428.1| hypothetical protein OB1507 [Oceanobacillus iheyensis HTE831]
 gi|22777190|dbj|BAC13463.1| hypothetical conserved protein [Oceanobacillus iheyensis HTE831]
          Length = 448

 Score = 71.3 bits (174), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 23/94 (24%), Positives = 42/94 (44%), Gaps = 3/94 (3%)

Query: 63  HVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVP 122
             D      +++G +  +  +D  +S  +  K    +LD+ + S+LR    ++I    VP
Sbjct: 38  EKDERLLTEVVYGSLQHQMTLDYYLSKFVKSK---KKLDIWVQSLLRMSFYQMIYLEKVP 94

Query: 123 VEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRK 156
              +I E V IA    +     F+N VL  + R+
Sbjct: 95  DHAVIHESVEIAKQRGHKGISSFVNGVLRSLQRQ 128


>gi|33239461|ref|NP_874403.1| transcription antitermination protein NusB [Prochlorococcus marinus
           subsp. marinus str. CCMP1375]
 gi|33236986|gb|AAP99055.1| Transcription termination factor, NusB [Prochlorococcus marinus
           subsp. marinus str. CCMP1375]
          Length = 211

 Score = 71.3 bits (174), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 26/111 (23%), Positives = 42/111 (37%), Gaps = 11/111 (9%)

Query: 43  EYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDM 102
           E       +D E         VDL         V+++ Q I+  +   + E W   RL  
Sbjct: 103 ELSRLLTLSDQEQIRNEAMKRVDL---------VINKYQIINDALD-NVMEGWRLKRLPR 152

Query: 103 ILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKV 153
           I   ILR      +     P+ V  +E V +A+ +      K IN +L ++
Sbjct: 153 IDQDILRLA-YIDLYNLKTPIAVSCNEAVNLANRYSDQQGRKMINGILRRL 202


>gi|269124204|ref|YP_003306781.1| NusB antitermination factor [Streptobacillus moniliformis DSM
           12112]
 gi|268315530|gb|ACZ01904.1| NusB antitermination factor [Streptobacillus moniliformis DSM
           12112]
          Length = 133

 Score = 70.9 bits (173), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 17/65 (26%), Positives = 31/65 (47%), Gaps = 1/65 (1%)

Query: 94  KWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKV 153
            W+FSRL      IL+    E++    V  E++I+E V ++  +       FIN +L  +
Sbjct: 69  GWTFSRLATPEKVILKMAFFEILF-EKVGHEIVINEAVELSKVYGDEKTKTFINGILADL 127

Query: 154 SRKEE 158
            +  +
Sbjct: 128 IKDID 132


>gi|197302406|ref|ZP_03167462.1| hypothetical protein RUMLAC_01134 [Ruminococcus lactaris ATCC
           29176]
 gi|197298527|gb|EDY33071.1| hypothetical protein RUMLAC_01134 [Ruminococcus lactaris ATCC
           29176]
          Length = 458

 Score = 70.9 bits (173), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 30/141 (21%), Positives = 53/141 (37%), Gaps = 16/141 (11%)

Query: 20  RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79
           R   +  L +I   G  + +I+ E           L         +  +   +  G ++ 
Sbjct: 8   REIVLAVLMEITENGAYSHKILGEV----------LSKYQYLEKKERAFITRVTEGTLEH 57

Query: 80  KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA--HDF 137
              ID ++      K        ++ +ILR+GV +L    SVP   + SE V +A    F
Sbjct: 58  LIEIDYILDQFSKVKVKKM--KPVIRNILRSGVYQLKYMDSVPDHAVCSEAVKLAVRKGF 115

Query: 138 FYGDEPKFINAVLDKVSRKEE 158
                  ++N VL  V+R  +
Sbjct: 116 SGLK--GYVNGVLRSVARGLD 134


>gi|289578506|ref|YP_003477133.1| sun protein [Thermoanaerobacter italicus Ab9]
 gi|289528219|gb|ADD02571.1| sun protein [Thermoanaerobacter italicus Ab9]
          Length = 444

 Score = 70.9 bits (173), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 27/96 (28%), Positives = 46/96 (47%), Gaps = 5/96 (5%)

Query: 63  HVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVP 122
            VD ++ + ++ GV++RK  +D ++S  + +         I    L  G+ +L+    VP
Sbjct: 36  EVDRDFIKKLVFGVIERKYTLDFILSFFVKK--PADEKSKIF---LEMGLYQLLYMDKVP 90

Query: 123 VEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEE 158
               I+E V IA +        FINAVL    R++E
Sbjct: 91  SYAAINETVNIAKNVLGIKRANFINAVLRSYEREKE 126


>gi|302533355|ref|ZP_07285697.1| ribosomal RNA small subunit methyltransferase B [Streptomyces sp.
           C]
 gi|302442250|gb|EFL14066.1| ribosomal RNA small subunit methyltransferase B [Streptomyces sp.
           C]
          Length = 488

 Score = 70.9 bits (173), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 30/165 (18%), Positives = 61/165 (36%), Gaps = 21/165 (12%)

Query: 1   MTIQDNKKDLKLSHRRGIA-----------RLAAVQALYQIDIIGCSTTEIISEYETYRF 49
           M+ Q  ++    S     A           R+ A +AL  +D        ++        
Sbjct: 1   MSEQPRRRPAPKSGTGKQAKPYRRPQKDPVRMLAFEALRAVDERDAYANLVLPPLL---- 56

Query: 50  CADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILR 109
               +   +  +   D      +++G + R+   D +I++C+        +D  +  +L 
Sbjct: 57  ---KKARQDERFQARDAALATELVYGTLRRQGTYDAVIAACVDR--PLREVDPPVLDVLS 111

Query: 110 AGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVS 154
            G  +L+    +P    +S  V +A         KF+NAVL K++
Sbjct: 112 LGAHQLLGTR-IPTHAAVSASVELARVVLGDGRAKFVNAVLRKIA 155


>gi|256788927|ref|ZP_05527358.1| putative Sun-family protein [Streptomyces lividans TK24]
          Length = 451

 Score = 70.9 bits (173), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 29/136 (21%), Positives = 54/136 (39%), Gaps = 7/136 (5%)

Query: 22  AAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQ 81
            A +AL  +D        ++            E +    +   D      +++G + R+ 
Sbjct: 2   LAFEALRAVDERDAYANLVLPPLLRKA----REKEGPEKFDARDAALATELVYGTLRRQG 57

Query: 82  HIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGD 141
             D +I+ C+        +D  +  +L  GV +L+    +P    +S  V +A       
Sbjct: 58  TYDAIIADCVDR--PLREVDPPVLDVLSLGVHQLLGTR-IPSHAAVSASVELARVVLGDG 114

Query: 142 EPKFINAVLDKVSRKE 157
             KF+NAVL KV+R +
Sbjct: 115 RAKFVNAVLRKVARDD 130


>gi|299821751|ref|ZP_07053639.1| ribosomal RNA small subunit methyltransferase B [Listeria grayi DSM
           20601]
 gi|299817416|gb|EFI84652.1| ribosomal RNA small subunit methyltransferase B [Listeria grayi DSM
           20601]
          Length = 445

 Score = 70.9 bits (173), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 29/150 (19%), Positives = 57/150 (38%), Gaps = 25/150 (16%)

Query: 10  LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF 69
           +K +      R AA++ L             I + +++      +   ++    +D    
Sbjct: 1   MKKTQS---VREAALEIL-----------LKIEKNQSFSHLLINDALKKTKLEALDRNLL 46

Query: 70  RVIIHGVMDRKQHIDLLISSCLT---EKWSFSRLDMILCSILRAGVLELIECHSVPVEVI 126
             +++G + R+  +D  + + L    E W           +LR  V +L+    VP   I
Sbjct: 47  TELVYGTLQRRLTLDYYLQTFLKKQPEDWVLE--------LLRMSVYQLVYLDKVPEHAI 98

Query: 127 ISEYVCIAHDFFYGDEPKFINAVLDKVSRK 156
           + E   IA    +    KF+N VL  + R+
Sbjct: 99  LHEAGEIAKQRSHQGVTKFVNGVLRNLIRQ 128


>gi|318057055|ref|ZP_07975778.1| RNA-binding Sun protein [Streptomyces sp. SA3_actG]
          Length = 481

 Score = 70.9 bits (173), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 32/166 (19%), Positives = 60/166 (36%), Gaps = 19/166 (11%)

Query: 1   MTIQDNKKDLKLSHRRGI---------ARLAAVQALYQIDIIGCSTTEIISEYETYRFCA 51
           M  Q        S RRG           R+ A  AL  +D        ++          
Sbjct: 1   MNDQTVTAPADSSRRRGRPHRAPRKDPVRVLAFDALRAVDERDAYANLVLPALLR----- 55

Query: 52  DTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAG 111
             E   +  +   D      +++G +  +   D +I++C+        +D  +  +L  G
Sbjct: 56  --EAREKGGFDARDAALATELVYGTLRGRGTYDAIIAACVDR--PLREVDPPVLDVLSLG 111

Query: 112 VLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKE 157
             +L+    +P    +S  V +A         +F+NAVL ++SR +
Sbjct: 112 AHQLLGTR-IPTHAAVSATVELARVVLGDGRSRFVNAVLRRISRND 156


>gi|297544782|ref|YP_003677084.1| sun protein [Thermoanaerobacter mathranii subsp. mathranii str. A3]
 gi|296842557|gb|ADH61073.1| sun protein [Thermoanaerobacter mathranii subsp. mathranii str. A3]
          Length = 444

 Score = 70.9 bits (173), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 33/139 (23%), Positives = 57/139 (41%), Gaps = 16/139 (11%)

Query: 20  RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79
           R  A + L           E++S+ E Y      +         +D  + + ++ GV++R
Sbjct: 4   REIAYKIL----------QEVLSK-EAYANITFNKYLKGQELKEIDRGFTKELVFGVIER 52

Query: 80  KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139
           K  +D ++S  + +         I    L  G+ +L+    VP    I+E V IA +   
Sbjct: 53  KYTLDFILSFFVKK--PADEKSKI---FLEMGLYQLLYMDKVPSYAAINETVNIAKNVLG 107

Query: 140 GDEPKFINAVLDKVSRKEE 158
                FINAVL    R++E
Sbjct: 108 IKRANFINAVLRSYEREKE 126


>gi|126656069|ref|ZP_01727453.1| Fmu, rRNA SAM-dependent methyltransferase [Cyanothece sp. CCY0110]
 gi|126622349|gb|EAZ93055.1| Fmu, rRNA SAM-dependent methyltransferase [Cyanothece sp. CCY0110]
          Length = 452

 Score = 70.9 bits (173), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 27/149 (18%), Positives = 54/149 (36%), Gaps = 13/149 (8%)

Query: 10  LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF 69
           + L+ +   AR   +  L             I    TY   A      ++     D    
Sbjct: 1   MSLTKKNTNARQLTLDIL-----------RHIDRQHTYTDIALDRSLTQNNLNPSDRSLC 49

Query: 70  RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISE 129
             +++G++  ++ +D LI     +K         L  IL  G+ +L   + +P    ++ 
Sbjct: 50  TQLVYGIVRHQRTLDTLIDQLGKKKAQQQ--PPDLRRILHIGLYQLRYLNHIPPSAAVNT 107

Query: 130 YVCIAHDFFYGDEPKFINAVLDKVSRKEE 158
            V +A D+        +N +L +  RK +
Sbjct: 108 SVNLAKDYQLNRLSGVVNGILRQYIRKSK 136


>gi|85858797|ref|YP_460999.1| 16S rRNA m(5)C 967 methyltransferase [Syntrophus aciditrophicus SB]
 gi|85721888|gb|ABC76831.1| 16S rRNA m(5)C 967 methyltransferase [Syntrophus aciditrophicus SB]
          Length = 471

 Score = 70.9 bits (173), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 29/142 (20%), Positives = 55/142 (38%), Gaps = 13/142 (9%)

Query: 20  RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79
           R  AV+ L +ID  G     ++  +                    D      +++G +  
Sbjct: 25  RSLAVEILDRIDTTGAFAEPLLDAFLRDHLLD----------SAPDRHLLTSLVYGTLRM 74

Query: 80  KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139
           +  +D +I   L +   FS +   + +ILR  + + +    +P   ++ E V +A   + 
Sbjct: 75  RGRLDWIIQQ-LYQG-RFSSMQGGIRNILRTALYQFLFMERIPAFALVDEAVELAKLRYP 132

Query: 140 GDEPKFINAVLDKVSRKEEIKR 161
           G E K +NA+L    RK     
Sbjct: 133 GRE-KLVNALLRNAVRKVSANE 153


>gi|226313315|ref|YP_002773209.1| ribosomal RNA small subunit methyltransferase [Brevibacillus brevis
           NBRC 100599]
 gi|226096263|dbj|BAH44705.1| probable ribosomal RNA small subunit methyltransferase
           [Brevibacillus brevis NBRC 100599]
          Length = 448

 Score = 70.9 bits (173), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 24/148 (16%), Positives = 54/148 (36%), Gaps = 23/148 (15%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           +  AR  A+  L             + E+++Y       +         D      +++G
Sbjct: 3   KKGARDIALDVL-----------NRVEEHKSYSNLELRNVLDRENLSAADAGLVTELVYG 51

Query: 76  VMDRKQHIDLLISSCL----TEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
            + RK  +D ++S  +     + W        + ++LR  + ++     +P    + + V
Sbjct: 52  TIQRKMTLDHVLSHFVGNKKVQTW--------VRNLLRLSLYQIHFLDRIPERAAVHQAV 103

Query: 132 CIAHDFFYGDEPKFINAVLDKVSRKEEI 159
            IA    +      +N VL  V R+ ++
Sbjct: 104 EIAKKRGHQGIASMVNGVLRNVLRQPDV 131


>gi|325261900|ref|ZP_08128638.1| ribosomal RNA small subunit methyltransferase B [Clostridium sp.
           D5]
 gi|324033354|gb|EGB94631.1| ribosomal RNA small subunit methyltransferase B [Clostridium sp.
           D5]
          Length = 451

 Score = 70.5 bits (172), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 22/106 (20%), Positives = 41/106 (38%), Gaps = 6/106 (5%)

Query: 55  LDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLE 114
           L         +  +   +  G ++    +D ++      K        ++ +ILR+ V +
Sbjct: 33  LSKYQYLDKKERAFITRVTEGTLEHLMELDYILGQFSKVKVKKM--KPVIRNILRSAVYQ 90

Query: 115 LIECHSVPVEVIISEYVCIA--HDFFYGDEPKFINAVLDKVSRKEE 158
           L    SVP   + +E V +A    F       F+N VL  V+R  +
Sbjct: 91  LKYMDSVPDSAVCNEAVKLAVKKGFGSLR--GFVNGVLRNVARGLD 134


>gi|255101745|ref|ZP_05330722.1| ribosomal RNA small subunit methyltransferase [Clostridium
           difficile QCD-63q42]
          Length = 441

 Score = 70.5 bits (172), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 24/118 (20%), Positives = 50/118 (42%), Gaps = 3/118 (2%)

Query: 41  ISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRL 100
           I + + Y   A  +         +D      +I+GV++ K ++D +I+     K    ++
Sbjct: 14  IEKNDNYSNIAINKHFKNLEISDMDRGLATELIYGVIENKYYLDYIINKL--SKIKVKKM 71

Query: 101 DMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEE 158
              +   LR G  +++   S+     ++E V ++  +       FINA+L    R +E
Sbjct: 72  STYVKIFLRMGTYQILFLDSISDYAAVNETVKLSKKY-DKKSSGFINAILRNEIRAKE 128


>gi|317501927|ref|ZP_07960111.1| sun protein [Lachnospiraceae bacterium 8_1_57FAA]
 gi|316896607|gb|EFV18694.1| sun protein [Lachnospiraceae bacterium 8_1_57FAA]
          Length = 456

 Score = 70.5 bits (172), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 22/130 (16%), Positives = 48/130 (36%), Gaps = 6/130 (4%)

Query: 31  DIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSC 90
           +I+     E+              L         +  +   +  G ++    ID ++   
Sbjct: 9   EIVAAILMEVTENGRYSHIVLREVLTKYQYLEKRERAFITRVTEGTLEHMTEIDYILDCF 68

Query: 91  LTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA--HDFFYGDEPKFINA 148
              K    ++  ++ +ILR+ V ++    S+P   + SE V +A    F       ++N 
Sbjct: 69  --SKVKVKKMKPLIRAILRSAVYQIKYMDSIPDHAVCSESVKLAVKKGFSGLR--GYVNG 124

Query: 149 VLDKVSRKEE 158
           VL  V ++ +
Sbjct: 125 VLRSVVKEID 134


>gi|170289195|ref|YP_001739433.1| sun protein [Thermotoga sp. RQ2]
 gi|170176698|gb|ACB09750.1| sun protein [Thermotoga sp. RQ2]
          Length = 431

 Score = 70.5 bits (172), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 30/123 (24%), Positives = 60/123 (48%), Gaps = 8/123 (6%)

Query: 40  IISEYETYRFCADTELDVESVYLH-VDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFS 98
           ++ +YE  +F +  ++D    +L   D  +F+ ++ GV+ +++ +D  I+  L +K    
Sbjct: 12  LLRKYEKEKFISREDVDSVLSFLDDRDRRFFKELVWGVVRKEELLDWYINQLLKKK---- 67

Query: 99  RLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEE 158
            +   +   LR G  +L+  +SVP    +SE V +       +  K +NAVL ++    E
Sbjct: 68  DVPPAVRVALRMGAYQLLFMNSVPDYAAVSETVKLVK---NENFKKLVNAVLRRLRTVPE 124

Query: 159 IKR 161
            K 
Sbjct: 125 PKE 127


>gi|126700200|ref|YP_001089097.1| ribosomal RNA small subunit methyltransferase [Clostridium
           difficile 630]
 gi|115251637|emb|CAJ69470.1| Ribosomal RNA small subunit methyltransferase B (rRNA
           (cytosine-C(5)-)-methyltransferase) [Clostridium
           difficile]
          Length = 441

 Score = 70.5 bits (172), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 24/118 (20%), Positives = 50/118 (42%), Gaps = 3/118 (2%)

Query: 41  ISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRL 100
           I + + Y   A  +         +D      +I+GV++ K ++D +I+     K    ++
Sbjct: 14  IEKNDNYSNIAINKHFKNLEISDMDRGLATELIYGVIENKYYLDYIINKL--SKIKVKKM 71

Query: 101 DMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEE 158
              +   LR G  +++   S+     ++E V ++  +       FINA+L    R +E
Sbjct: 72  STYVKIFLRMGTYQILFLDSISDYAAVNETVKLSKKY-DKKSSGFINAILRNEIRAKE 128


>gi|254976172|ref|ZP_05272644.1| ribosomal RNA small subunit methyltransferase [Clostridium
           difficile QCD-66c26]
 gi|255315305|ref|ZP_05356888.1| ribosomal RNA small subunit methyltransferase [Clostridium
           difficile QCD-76w55]
 gi|255517973|ref|ZP_05385649.1| ribosomal RNA small subunit methyltransferase [Clostridium
           difficile QCD-97b34]
 gi|255651089|ref|ZP_05397991.1| ribosomal RNA small subunit methyltransferase [Clostridium
           difficile QCD-37x79]
 gi|260684154|ref|YP_003215439.1| ribosomal RNA small subunit methyltransferase [Clostridium
           difficile CD196]
 gi|260687813|ref|YP_003218947.1| ribosomal RNA small subunit methyltransferase [Clostridium
           difficile R20291]
 gi|306520940|ref|ZP_07407287.1| ribosomal RNA small subunit methyltransferase [Clostridium
           difficile QCD-32g58]
 gi|260210317|emb|CBA64638.1| ribosomal RNA small subunit methyltransferase [Clostridium
           difficile CD196]
 gi|260213830|emb|CBE05814.1| ribosomal RNA small subunit methyltransferase [Clostridium
           difficile R20291]
          Length = 441

 Score = 70.5 bits (172), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 24/118 (20%), Positives = 50/118 (42%), Gaps = 3/118 (2%)

Query: 41  ISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRL 100
           I + + Y   A  +         +D      +I+GV++ K ++D +I+     K    ++
Sbjct: 14  IEKNDNYSNIAINKHFKNLEISDMDRGLATELIYGVIENKYYLDYIINKL--SKIKVKKM 71

Query: 101 DMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEE 158
              +   LR G  +++   S+     ++E V ++  +       FINA+L    R +E
Sbjct: 72  STYVKIFLRMGTYQILFLDSISDYAAVNETVKLSKKY-DKKSSGFINAILRNEIRAKE 128


>gi|302823170|ref|XP_002993239.1| hypothetical protein SELMODRAFT_136794 [Selaginella moellendorffii]
 gi|300138909|gb|EFJ05660.1| hypothetical protein SELMODRAFT_136794 [Selaginella moellendorffii]
          Length = 476

 Score = 70.5 bits (172), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 25/87 (28%), Positives = 47/87 (54%), Gaps = 2/87 (2%)

Query: 73  IHGVMDRKQHIDLLISSCLTEKW-SFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
           + G++  K+++D +IS+   +    F R++ IL  +LR G  EL++   VP   +++E V
Sbjct: 68  VAGIVRWKKYLDYVISNVYDKDQNEFERMEPILKQVLRLGSYELLK-LEVPAYAVVNEAV 126

Query: 132 CIAHDFFYGDEPKFINAVLDKVSRKEE 158
            +A+        K  NA+L  V+  +E
Sbjct: 127 KLANAASRAGAGKLANALLRAVASHKE 153


>gi|125624853|ref|YP_001033336.1| ribosomal RNA small subunit methyltransferase B [Lactococcus lactis
           subsp. cremoris MG1363]
 gi|4210751|emb|CAA10711.1| sunL protein [Lactococcus lactis]
 gi|124493661|emb|CAL98648.1| Ribosomal RNA small subunit methyltransferase B [Lactococcus lactis
           subsp. cremoris MG1363]
 gi|300071650|gb|ADJ61050.1| ribosomal RNA small subunit methyltransferase B [Lactococcus lactis
           subsp. cremoris NZ9000]
          Length = 424

 Score = 70.1 bits (171), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 31/148 (20%), Positives = 54/148 (36%), Gaps = 22/148 (14%)

Query: 17  GIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGV 76
             AR  A+  L           +  +     R   D+EL        VD  +   +++GV
Sbjct: 3   KNARQTALDVL-----NDIFGNDAYANISLDRNLRDSELST------VDKGFVTALVYGV 51

Query: 77  MDRKQHIDLLISSCLTEK---WSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCI 133
           + +K  ++  I+  L ++   W+          +L   + +++    VP+   + E V I
Sbjct: 52  VSKKALLEWYITPLLKKEPKPWA--------KMLLLLTIYQVLFMDKVPISAAVDEAVKI 103

Query: 134 AHDFFYGDEPKFINAVLDKVSRKEEIKR 161
           A          FINAVL    R E    
Sbjct: 104 AKRHDGQATANFINAVLRNFMRSEHRNE 131


>gi|282866194|ref|ZP_06275241.1| Fmu (Sun) domain protein [Streptomyces sp. ACTE]
 gi|282558978|gb|EFB64533.1| Fmu (Sun) domain protein [Streptomyces sp. ACTE]
          Length = 477

 Score = 70.1 bits (171), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 31/156 (19%), Positives = 61/156 (39%), Gaps = 12/156 (7%)

Query: 1   MTIQDNKKDLKLSHR--RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVE 58
           M  Q  ++  K   R  +   R  A +AL  +D        ++            +   +
Sbjct: 1   MNDQQRRRPAKQHRRPEKDPVRFLAFEALRAVDERDAYANLVLPPLL-------KKARAK 53

Query: 59  SVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIEC 118
             +   D      +++G + R+   D ++++C+        +D  +  ++  GV +L+  
Sbjct: 54  GDFDGRDAALATELVYGTLRRQGTYDAIVAACVDR--PLREVDPPVLDVIEMGVHQLLGT 111

Query: 119 HSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVS 154
             +P    +S  V +A         KF+NAVL KVS
Sbjct: 112 R-IPTHAAVSASVELARVVLGEGRAKFVNAVLRKVS 146


>gi|326522879|dbj|BAJ88485.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 275

 Score = 70.1 bits (171), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 28/136 (20%), Positives = 51/136 (37%), Gaps = 19/136 (13%)

Query: 36  STTEIISEYETYRFCADTELDVES-----------VYLHVDLEWFRVIIHGVM----DRK 80
              E+ +E E  +  +  E D  +           VY +  L   R ++  V        
Sbjct: 130 GPLEVATEEEAEKLMSQNEKDSANEAEVLSAPPRLVYNNFVLRLARDMLVAVASGWDQHV 189

Query: 81  QHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYG 140
           + I+ +I     ++   +R+  +   IL   + E+      P +V I+E V +A  F  G
Sbjct: 190 EVINKIIPQHWKDE-PVARI--LELCILHIAMAEMT-SKGTPHKVAINEAVDLAKRFCDG 245

Query: 141 DEPKFINAVLDKVSRK 156
             P+ IN  L    + 
Sbjct: 246 GAPRVINGCLRTYVKD 261


>gi|262195801|ref|YP_003267010.1| sun protein [Haliangium ochraceum DSM 14365]
 gi|262079148|gb|ACY15117.1| sun protein [Haliangium ochraceum DSM 14365]
          Length = 501

 Score = 70.1 bits (171), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 20/94 (21%), Positives = 37/94 (39%), Gaps = 2/94 (2%)

Query: 65  DLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVE 124
           D      + +G + ++  +D  +++         +LD    SILR    E++    VP  
Sbjct: 79  DRALVTELCYGSLRQQMRLDRALAALTPRG--LGKLDAATLSILRVAAYEILFLERVPAH 136

Query: 125 VIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEE 158
             ++  V  A          F N VL  ++R+ E
Sbjct: 137 ASVNSAVRAARRLGGQRFAGFANGVLRTLAREGE 170


>gi|255656560|ref|ZP_05401969.1| ribosomal RNA small subunit methyltransferase [Clostridium
           difficile QCD-23m63]
 gi|296449988|ref|ZP_06891752.1| ribosomal RNA small subunit methyltransferase B [Clostridium
           difficile NAP08]
 gi|296878369|ref|ZP_06902377.1| ribosomal RNA small subunit methyltransferase B [Clostridium
           difficile NAP07]
 gi|296261258|gb|EFH08089.1| ribosomal RNA small subunit methyltransferase B [Clostridium
           difficile NAP08]
 gi|296430667|gb|EFH16506.1| ribosomal RNA small subunit methyltransferase B [Clostridium
           difficile NAP07]
          Length = 441

 Score = 70.1 bits (171), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 27/140 (19%), Positives = 57/140 (40%), Gaps = 14/140 (10%)

Query: 19  ARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMD 78
           AR    + L  I+     +   I+++      +D           +D      +I+GV++
Sbjct: 3   AREVGFKVLCDIEKNNNYSNIAINKHFKNLEISD-----------IDRGLATELIYGVIE 51

Query: 79  RKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFF 138
            K ++D +I+     K    ++   +   LR G  +++   S+     ++E V ++  + 
Sbjct: 52  NKYYLDYIINKL--SKIKVKKMSTYVKIFLRMGTYQILFLDSISDYAAVNETVKLSKKY- 108

Query: 139 YGDEPKFINAVLDKVSRKEE 158
                 FINA+L    R +E
Sbjct: 109 DKKSSGFINAILRNEIRAKE 128


>gi|296170731|ref|ZP_06852304.1| RNA methyltransferase Sun [Mycobacterium parascrofulaceum ATCC
           BAA-614]
 gi|295894614|gb|EFG74350.1| RNA methyltransferase Sun [Mycobacterium parascrofulaceum ATCC
           BAA-614]
          Length = 461

 Score = 70.1 bits (171), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 34/160 (21%), Positives = 58/160 (36%), Gaps = 18/160 (11%)

Query: 3   IQDNKKDLKLSHRRGI----ARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVE 58
           +   +   +   +R      AR AA + L             +SE + Y   A   L  E
Sbjct: 1   MSPPRPPNRGRGKRRRPLDPARAAAFEVL-----------RAVSERDAYANLALPALLRE 49

Query: 59  SVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIEC 118
                 D  +   + +G    +  +D +I +      S   +D +L  +LR G  +L+  
Sbjct: 50  RQISGRDAAFATELAYGTCRTRGLLDAVIGAA--AGRSPDTIDPVLLDLLRLGTYQLL-R 106

Query: 119 HSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEE 158
             V     +S  V  A   F      F+N VL  V+ ++E
Sbjct: 107 TRVDSYAAVSTTVEQAGIEFDSARAGFVNGVLRAVAARDE 146


>gi|329770489|ref|ZP_08261867.1| hypothetical protein HMPREF0433_01631 [Gemella sanguinis M325]
 gi|328836238|gb|EGF85907.1| hypothetical protein HMPREF0433_01631 [Gemella sanguinis M325]
          Length = 441

 Score = 70.1 bits (171), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 20/138 (14%), Positives = 48/138 (34%), Gaps = 16/138 (11%)

Query: 19  ARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMD 78
           AR      LY+I      +   ++++       +            +  +   I++G + 
Sbjct: 6   ARKVVYDTLYEIFYNEAYSNITLNKFFKQNGIEEQ-----------NKRFISEIVYGTLK 54

Query: 79  RKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFF 138
            K  ++ ++ +         R+   +  IL   + ++      P   +I E V ++    
Sbjct: 55  NKLFLEHILKTYSK-----GRVKPKVKVILLMSIYQIKFMDKTPNFAVIDEAVKLSKKIA 109

Query: 139 YGDEPKFINAVLDKVSRK 156
                KF+N +L  + R 
Sbjct: 110 GNITGKFVNGILRNIERN 127


>gi|116512767|ref|YP_811674.1| tRNA and rRNA cytosine-C5-methylase [Lactococcus lactis subsp.
           cremoris SK11]
 gi|116108421|gb|ABJ73561.1| tRNA and rRNA cytosine-C5-methylase [Lactococcus lactis subsp.
           cremoris SK11]
          Length = 424

 Score = 70.1 bits (171), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 31/148 (20%), Positives = 53/148 (35%), Gaps = 22/148 (14%)

Query: 17  GIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGV 76
             AR  A+  L           +  +     R   D+EL        VD  +   +++GV
Sbjct: 3   KNARQTALDVL-----NDIFGNDAYANISLDRNLRDSELST------VDKGFVTALVYGV 51

Query: 77  MDRKQHIDLLISSCLTEK---WSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCI 133
           + +K  ++  I+  L ++   W+          +L   + +++    VP    + E V I
Sbjct: 52  VSKKALLEWYITPLLKKEPKPWA--------KMLLLLTIYQVLFMDKVPTSAAVDEAVKI 103

Query: 134 AHDFFYGDEPKFINAVLDKVSRKEEIKR 161
           A          FINAVL    R E    
Sbjct: 104 AKRHDGQATANFINAVLRNFMRSEHRNE 131


>gi|153953997|ref|YP_001394762.1| hypothetical protein CKL_1372 [Clostridium kluyveri DSM 555]
 gi|219854611|ref|YP_002471733.1| hypothetical protein CKR_1268 [Clostridium kluyveri NBRC 12016]
 gi|146346878|gb|EDK33414.1| Hypothetical protein CKL_1372 [Clostridium kluyveri DSM 555]
 gi|219568335|dbj|BAH06319.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 443

 Score = 70.1 bits (171), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 16/95 (16%), Positives = 41/95 (43%), Gaps = 3/95 (3%)

Query: 63  HVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVP 122
             D      +++G +  K  ID ++ + +       +++  + ++LR  + +L     +P
Sbjct: 37  KKDRALITELVYGTLKYKYTIDCILKNFIKSN--LEKMNKDILNMLRISICQLRYLDKIP 94

Query: 123 VEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKE 157
              +++E V  + +  +    K +N VL    R +
Sbjct: 95  EFAVVNEAVEFSKNISFKLS-KLVNGVLRNYLRNK 128


>gi|322434767|ref|YP_004216979.1| Fmu (Sun) domain protein [Acidobacterium sp. MP5ACTX9]
 gi|321162494|gb|ADW68199.1| Fmu (Sun) domain protein [Acidobacterium sp. MP5ACTX9]
          Length = 459

 Score = 70.1 bits (171), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 28/136 (20%), Positives = 49/136 (36%), Gaps = 14/136 (10%)

Query: 19  ARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMD 78
           AR AA + L  +      + E++    T +                D      ++ GV+ 
Sbjct: 56  ARRAAFEILMLVKAGKGHSDELLHGQWTDKL------------SEADTNLTTALVMGVLR 103

Query: 79  RKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFF 138
            +  +D  + + L       RL   +   LR G  +L+    +P    +SE V +     
Sbjct: 104 WEIALDARLRTLLQR--PDQRLAEPVAMALRLGAFQLLHMDRIPAHAALSESVELCRAAG 161

Query: 139 YGDEPKFINAVLDKVS 154
                  +NAVL KV+
Sbjct: 162 EPHATGMVNAVLRKVA 177


>gi|313113577|ref|ZP_07799165.1| ribosomal RNA small subunit methyltransferase B [Faecalibacterium
           cf. prausnitzii KLE1255]
 gi|310624092|gb|EFQ07459.1| ribosomal RNA small subunit methyltransferase B [Faecalibacterium
           cf. prausnitzii KLE1255]
          Length = 444

 Score = 69.7 bits (170), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 22/88 (25%), Positives = 40/88 (45%), Gaps = 3/88 (3%)

Query: 65  DLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVE 124
           D  +   I + V++ +  +D ++   L +    ++LD  +  ILRA + +      VPV 
Sbjct: 39  DKAFASAIFYTVLEHRGTLDYILCQFLPKG--LAKLDAPVREILRAALAQARYMQ-VPVS 95

Query: 125 VIISEYVCIAHDFFYGDEPKFINAVLDK 152
             ++E V +   F        +NAVL K
Sbjct: 96  AAVNEAVKLTRAFKKSSASGLVNAVLRK 123


>gi|289422320|ref|ZP_06424170.1| ribosomal RNA small subunit methyltransferase B [Peptostreptococcus
           anaerobius 653-L]
 gi|289157265|gb|EFD05880.1| ribosomal RNA small subunit methyltransferase B [Peptostreptococcus
           anaerobius 653-L]
          Length = 446

 Score = 69.7 bits (170), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 28/118 (23%), Positives = 53/118 (44%), Gaps = 3/118 (2%)

Query: 41  ISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRL 100
           I +   Y   A  +   +S   + D      I++GV+  K+ +D +I+     K    ++
Sbjct: 14  IEKNSNYSNIALNKFLKDSKLTNKDRGLATEIVYGVVANKRTLDYMINKKSKIK--VKKM 71

Query: 101 DMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEE 158
           +  +  ILR GV +L+    V    +I E V +           F+NA+L  +SR+++
Sbjct: 72  NHSVKIILRMGVYQLLYLDRVADYGVIDEAVKMMKKI-DRRSSGFVNAILRNISREKD 128


>gi|172040659|ref|YP_001800373.1| putative tRNA and rRNA cytosine-C5-methylase [Corynebacterium
           urealyticum DSM 7109]
 gi|171851963|emb|CAQ04939.1| putative tRNA and rRNA cytosine-C5-methylase [Corynebacterium
           urealyticum DSM 7109]
          Length = 513

 Score = 69.7 bits (170), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 30/157 (19%), Positives = 54/157 (34%), Gaps = 19/157 (12%)

Query: 4   QDNKKDLKLSHRRG-----IARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVE 58
           Q  + + +    R       AR AA   L Q           ++E + Y   A   +  E
Sbjct: 40  QQRRPEHRQEKSRRAGTGDKARDAAFAVLRQ-----------VTEEDAYGNLALPAVLRE 88

Query: 59  SVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIEC 118
                 D  +   + +G +     +D +I+         +++D +    LR G  +L+  
Sbjct: 89  RGISGRDANFATELTYGTLRATGLLDAIIAKA--AGRPVAKIDSVALDALRIGAYQLL-R 145

Query: 119 HSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSR 155
             V     +   V +      G    F+N VL  +SR
Sbjct: 146 TRVEPHAAVDTSVELVKANGGGKASGFVNGVLRTISR 182


>gi|77917857|ref|YP_355672.1| Sun protein [Pelobacter carbinolicus DSM 2380]
 gi|77543940|gb|ABA87502.1| Sun protein [Pelobacter carbinolicus DSM 2380]
          Length = 451

 Score = 69.7 bits (170), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 20/108 (18%), Positives = 45/108 (41%), Gaps = 2/108 (1%)

Query: 49  FCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSIL 108
              D+ L         D      +++GV+  +  +D  +   L  K   ++++  + ++L
Sbjct: 25  LALDSALQALPDMDVRDRALATELVYGVLRYRGRLDFALQQ-LCRK-PLAKVEPAVLNLL 82

Query: 109 RAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRK 156
           R G  ++++   +P    + E V +A          FIN +L  + R+
Sbjct: 83  RLGCYQILQLDRIPNHAAVFETVELARRLKLQRATGFINGILRGLVRQ 130


>gi|299143974|ref|ZP_07037054.1| ribosomal RNA small subunit methyltransferase B [Peptoniphilus sp.
           oral taxon 386 str. F0131]
 gi|298518459|gb|EFI42198.1| ribosomal RNA small subunit methyltransferase B [Peptoniphilus sp.
           oral taxon 386 str. F0131]
          Length = 440

 Score = 69.7 bits (170), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 24/115 (20%), Positives = 46/115 (40%), Gaps = 2/115 (1%)

Query: 44  YETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMI 103
           Y+      +  +  +S     D      I  GV+  K  ++ ++S     K         
Sbjct: 17  YKGAFLNEELLILSKSKIDKRDYNLIVNITTGVVQNKLLLEHIVSKYSKIKIKKIH--RT 74

Query: 104 LCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEE 158
           + +IL+ G+ ++     +P   II+E V +A  F       F+N +L  + R +E
Sbjct: 75  ILTILQMGIYQIFFTSRIPDYSIINESVNLAKIFGNQGSAGFVNGLLRNILRDKE 129


>gi|302541076|ref|ZP_07293418.1| sun protein [Streptomyces hygroscopicus ATCC 53653]
 gi|302458694|gb|EFL21787.1| sun protein [Streptomyces himastatinicus ATCC 53653]
          Length = 482

 Score = 69.7 bits (170), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 27/160 (16%), Positives = 57/160 (35%), Gaps = 16/160 (10%)

Query: 1   MTIQDNKK------DLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTE 54
           M+ Q                ++   R+ A +AL  +D        ++            +
Sbjct: 1   MSPQSGPPRRSHPGKPYRRPKKDPVRILAFEALRAVDERDAYANLVLPPLLR-------K 53

Query: 55  LDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLE 114
              +  +   D      +++G +  +   D +I+ C+        +D  +  +L  G  +
Sbjct: 54  AREDGGFDARDAALTTELVYGTLRLQGTYDAIIAECVDR--PLREVDPPVLDVLSLGAHQ 111

Query: 115 LIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVS 154
           L+    +P    +S  V +A         KF+NAVL K++
Sbjct: 112 LLGTR-IPTHAAVSASVELARVVLGDGRAKFVNAVLRKIA 150


>gi|217077823|ref|YP_002335541.1| sun protein [Thermosipho africanus TCF52B]
 gi|217037678|gb|ACJ76200.1| sun protein [Thermosipho africanus TCF52B]
          Length = 415

 Score = 69.7 bits (170), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 22/93 (23%), Positives = 47/93 (50%), Gaps = 12/93 (12%)

Query: 65  DLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVE 124
           +  +F+ +I GV+ +++++D +I S L ++     +   + +ILR G  +LI  +     
Sbjct: 33  EKAFFKNLIFGVLRKQEYLDWIIDSYLKKR----DIPPSIRTILRIGAYQLIFTNKPSYS 88

Query: 125 VIISEYVCIA--HDFFYGDEPKFINAVLDKVSR 155
           V+ +  V +     F        +NAVL K+++
Sbjct: 89  VV-NNCVELVEKKSF-----RGLVNAVLRKIAK 115


>gi|317495215|ref|ZP_07953585.1| ribosomal RNA small subunit methyltransferase B [Gemella moribillum
           M424]
 gi|316914637|gb|EFV36113.1| ribosomal RNA small subunit methyltransferase B [Gemella moribillum
           M424]
          Length = 441

 Score = 69.7 bits (170), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 18/118 (15%), Positives = 43/118 (36%), Gaps = 5/118 (4%)

Query: 41  ISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRL 100
           I + + Y      +   +      D  +   +++G +  K ++       + + +S  R+
Sbjct: 17  IFQEDAYSNITLNKYFNKYKLEEQDKRFISEVVYGTIKNKMYL-----EHILKNYSKGRV 71

Query: 101 DMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEE 158
              +  I+   + +L+     P   II E V ++          F+N +L  + R   
Sbjct: 72  KPKVKIIIIMAIYQLLYMDKTPSFAIIDEAVKLSKKILGNITGNFVNGILRNIERNLN 129


>gi|333028379|ref|ZP_08456443.1| putative RNA-binding Sun protein [Streptomyces sp. Tu6071]
 gi|332748231|gb|EGJ78672.1| putative RNA-binding Sun protein [Streptomyces sp. Tu6071]
          Length = 486

 Score = 69.7 bits (170), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 27/146 (18%), Positives = 57/146 (39%), Gaps = 10/146 (6%)

Query: 12  LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71
            + R+   R+ A  AL  +D        ++            E   +  +   D      
Sbjct: 26  RAPRKDPVRVLAFDALRAVDERDAYANLVLPALLR-------EAREKGGFDARDAALATE 78

Query: 72  IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
           +++G +  +   D +I++C+        +D  +  +L  G  +L+    +P    +S  V
Sbjct: 79  LVYGTLRGRGTYDAIIAACVDR--PLREVDPPVLDVLSLGAHQLLGTR-IPTHAAVSATV 135

Query: 132 CIAHDFFYGDEPKFINAVLDKVSRKE 157
            +A         +F+NAVL ++SR +
Sbjct: 136 ELARVVLGDGRSRFVNAVLRRISRND 161


>gi|115454421|ref|NP_001050811.1| Os03g0656900 [Oryza sativa Japonica Group]
 gi|31415975|gb|AAP50995.1| unknown protein [Oryza sativa Japonica Group]
 gi|108710180|gb|ABF97975.1| antitermination NusB domain-containing protein, putative, expressed
           [Oryza sativa Japonica Group]
 gi|113549282|dbj|BAF12725.1| Os03g0656900 [Oryza sativa Japonica Group]
 gi|125545109|gb|EAY91248.1| hypothetical protein OsI_12862 [Oryza sativa Indica Group]
          Length = 287

 Score = 69.7 bits (170), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 29/137 (21%), Positives = 51/137 (37%), Gaps = 17/137 (12%)

Query: 34  GCSTTEIISEYETYRFCADTELDVES-----------VYLHVDLEWFRVIIHGVMDRKQH 82
           G    E+ +E E  +  +  E D  +           VY +  L   R I+  V      
Sbjct: 138 GGGPLEVGTEEEAEKLMSQNEKDSANEAEVLSAPPKLVYNNFVLRLAREILVAVASGWDK 197

Query: 83  IDLLISSCLTEKW---SFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139
              +I+    + W     +R+  +   IL   + E+      P +++I+E V +A  F  
Sbjct: 198 HVDIINKITPQNWKDEPVARI--LELCILHIAMAEMT-SKGTPHKIVINEAVDLAKRFCD 254

Query: 140 GDEPKFINAVLDKVSRK 156
           G  P+ IN  L    + 
Sbjct: 255 GGAPRVINGCLRTFVKD 271


>gi|251810647|ref|ZP_04825120.1| rRNA (cytosine-5-)-methyltransferase [Staphylococcus epidermidis
           BCM-HMP0060]
 gi|282876351|ref|ZP_06285218.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
           epidermidis SK135]
 gi|251805807|gb|EES58464.1| rRNA (cytosine-5-)-methyltransferase [Staphylococcus epidermidis
           BCM-HMP0060]
 gi|281295376|gb|EFA87903.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
           epidermidis SK135]
          Length = 435

 Score = 69.4 bits (169), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 25/126 (19%), Positives = 48/126 (38%), Gaps = 12/126 (9%)

Query: 35  CSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLT-- 92
            +  +++++   Y      E+   +    VD   F  +++G + RK  +D L+   +   
Sbjct: 11  ETINDVLNK-GAYSNLKINEVLSTNNINTVDKNLFTELVYGTIKRKYSLDYLLKPFIKTK 69

Query: 93  -EKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLD 151
            + W        +  +L   + + +    +P   II E V IA           +N VL 
Sbjct: 70  IKSW--------VRQLLWMSLYQYLYLDKIPNHAIIHEAVDIAKKRGGYHTGNIVNGVLR 121

Query: 152 KVSRKE 157
            V R E
Sbjct: 122 TVMRTE 127


>gi|320105842|ref|YP_004181432.1| NusB/RsmB/TIM44 [Terriglobus saanensis SP1PR4]
 gi|319924363|gb|ADV81438.1| NusB/RsmB/TIM44 [Terriglobus saanensis SP1PR4]
          Length = 419

 Score = 69.4 bits (169), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 18/78 (23%), Positives = 32/78 (41%), Gaps = 2/78 (2%)

Query: 82  HIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGD 141
            ID ++   L     F  +   +   LR G  +L+    +P    ++E V +A       
Sbjct: 62  AIDSILRPYLQR--PFQEMPAPVLLALRLGTFQLLLLDRIPDHAALNESVELARANGAPH 119

Query: 142 EPKFINAVLDKVSRKEEI 159
               +NAVL +V R+ + 
Sbjct: 120 AAGMVNAVLRRVQREGDA 137


>gi|328952872|ref|YP_004370206.1| sun protein [Desulfobacca acetoxidans DSM 11109]
 gi|328453196|gb|AEB09025.1| sun protein [Desulfobacca acetoxidans DSM 11109]
          Length = 456

 Score = 69.4 bits (169), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 20/104 (19%), Positives = 42/104 (40%), Gaps = 3/104 (2%)

Query: 52  DTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAG 111
           +  L       H D    R ++ GV+  +  +D  I     +    ++L  ++ ++LR  
Sbjct: 31  EQTLSDHPRLSHPDRALLRELVTGVLRWRGRLDYAIGQVSHQ--PVNKLHPLVLNLLRLT 88

Query: 112 VLELIECHSVPVEVIISEYVCIAHDF-FYGDEPKFINAVLDKVS 154
             +L+    +P    ++E V +A           F+NA   K++
Sbjct: 89  TYQLLFLDRIPASAAVNESVKLAKIHRLPPALIGFVNAAARKLA 132


>gi|323464691|gb|ADX76844.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
           pseudintermedius ED99]
          Length = 433

 Score = 69.4 bits (169), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 19/126 (15%), Positives = 46/126 (36%), Gaps = 12/126 (9%)

Query: 31  DIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSC 90
           ++   +   ++ +   Y      E+         D   +  +++G + RK  +D  +   
Sbjct: 6   ELSLMTIEAVLKD-GAYSNLKMNEMLQTYPLNPADRGLYTELVYGTIKRKLTLDYYLKPF 64

Query: 91  LT---EKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFIN 147
           +    + W        +  +L   + + +    VP   +I+E V IA           +N
Sbjct: 65  VKTKIKGW--------VRRLLWMSLYQFLYLDKVPTHALINEAVNIAKKRGGAQTGNTVN 116

Query: 148 AVLDKV 153
           A+L ++
Sbjct: 117 AILRQM 122


>gi|319892211|ref|YP_004149086.1| Ribosomal RNA small subunit methyltransferase B [Staphylococcus
           pseudintermedius HKU10-03]
 gi|317161907|gb|ADV05450.1| Ribosomal RNA small subunit methyltransferase B [Staphylococcus
           pseudintermedius HKU10-03]
          Length = 433

 Score = 69.4 bits (169), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 19/126 (15%), Positives = 46/126 (36%), Gaps = 12/126 (9%)

Query: 31  DIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSC 90
           ++   +   ++ +   Y      E+         D   +  +++G + RK  +D  +   
Sbjct: 6   ELSLMTIEAVLKD-GAYSNLKMNEMLQTYPLNPADRGLYTELVYGTIKRKLTLDYYLKPF 64

Query: 91  LT---EKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFIN 147
           +    + W        +  +L   + + +    VP   +I+E V IA           +N
Sbjct: 65  VKTKIKGW--------VRRLLWMSLYQFLYLDKVPTHALINEAVNIAKKRGGAQTGNTVN 116

Query: 148 AVLDKV 153
           A+L ++
Sbjct: 117 AILRQM 122


>gi|311894797|dbj|BAJ27205.1| hypothetical protein KSE_13770 [Kitasatospora setae KM-6054]
          Length = 477

 Score = 69.4 bits (169), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 35/173 (20%), Positives = 63/173 (36%), Gaps = 14/173 (8%)

Query: 1   MTIQDNKKDLKLSHRRGI---ARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDV 57
           M+     K     HRR     AR+ A +AL  +D        I+            E   
Sbjct: 1   MSTPAGAKRAPRPHRRPKKDPARIVAFRALRAVDERDAYANLILPSLLREAERKGMERR- 59

Query: 58  ESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIE 117
                  D      +++G +  +   D +I++C+        +D  +  +L  G  +L+ 
Sbjct: 60  -------DAALATELVYGTLRGQGTYDAVIAACVDR--PLREVDPPVLDVLSLGAHQLLG 110

Query: 118 CHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRSGCVSAITQ 170
              +P    +S  V +A         KF+NAVL K+S ++       V+   +
Sbjct: 111 TR-IPSHAAVSATVELARVVLGDGRAKFVNAVLRKISAQDLAGWVAQVAPPYE 162


>gi|255563540|ref|XP_002522772.1| ribosomal RNA small subunit methyltransferase B, putative [Ricinus
           communis]
 gi|223538010|gb|EEF39623.1| ribosomal RNA small subunit methyltransferase B, putative [Ricinus
           communis]
          Length = 527

 Score = 69.4 bits (169), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 23/96 (23%), Positives = 44/96 (45%), Gaps = 1/96 (1%)

Query: 63  HVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVP 122
             DL     ++ G +  ++ +D LI S   ++ +F  ++ +L  ILR G  E+++    P
Sbjct: 110 DRDLRLVTDVVGGTIRWRRFLDHLICSLFHDENTFRSMEPLLLQILRIGAYEIVKLDMPP 169

Query: 123 VEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEE 158
             V+  E V +A           +N +L K+   +E
Sbjct: 170 YAVV-DENVRLAKVALRPGAGNMVNGILRKLVLLKE 204


>gi|325977628|ref|YP_004287344.1| ribosomal RNA small subunit methyltransferase B [Streptococcus
           gallolyticus subsp. gallolyticus ATCC BAA-2069]
 gi|325177556|emb|CBZ47600.1| ribosomal RNA small subunit methyltransferase B [Streptococcus
           gallolyticus subsp. gallolyticus ATCC BAA-2069]
          Length = 440

 Score = 69.4 bits (169), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 28/143 (19%), Positives = 60/143 (41%), Gaps = 15/143 (10%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           +  AR  A+  L           E + E   Y   A  +    +     D      I++G
Sbjct: 6   KNQARGLALLVL-----------ENVFEDGAYSNIALNQELSHTTLSPKDKSLVTEIVYG 54

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
            + RK  ++  ++  + ++    +LD  +  +L   + +L+    +P   ++++ V IA 
Sbjct: 55  TVARKITLEWYLAHYIKDR---DKLDSWVYYLLMLSLYQLVYLDKIPAHAVVNDAVNIAK 111

Query: 136 DFFYGDEP-KFINAVLDKVSRKE 157
           +        KF+NAVL + +++E
Sbjct: 112 NRGNKKGAEKFVNAVLRRFTKEE 134


>gi|302517945|ref|ZP_07270287.1| RNA-binding Sun protein [Streptomyces sp. SPB78]
 gi|302426840|gb|EFK98655.1| RNA-binding Sun protein [Streptomyces sp. SPB78]
          Length = 476

 Score = 69.4 bits (169), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 27/146 (18%), Positives = 57/146 (39%), Gaps = 10/146 (6%)

Query: 12  LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71
            + R+   R+ A  AL  +D        ++            E   +  +   D      
Sbjct: 60  RAPRKDPVRVLAFDALRAVDERDAYANLVLPALLR-------EAREKGGFDARDAALATE 112

Query: 72  IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
           +++G +  +   D +I++C+        +D  +  +L  G  +L+    +P    +S  V
Sbjct: 113 LVYGTLRGRGTYDAIIAACVDR--PLREVDPPVLDVLSLGAHQLLGTR-IPTHAAVSATV 169

Query: 132 CIAHDFFYGDEPKFINAVLDKVSRKE 157
            +A         +F+NAVL ++SR +
Sbjct: 170 ELARVVLGDGRSRFVNAVLRRISRND 195


>gi|319401490|gb|EFV89700.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
           epidermidis FRI909]
          Length = 435

 Score = 69.4 bits (169), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 24/126 (19%), Positives = 48/126 (38%), Gaps = 12/126 (9%)

Query: 35  CSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLT-- 92
            +  +++++   Y      E+   +    VD   F  +++G + RK  +D L+   +   
Sbjct: 11  ETINDVLNK-GAYSNLKINEVLSTNNINTVDKNLFTELVYGTLKRKYTLDYLLKPFIKTK 69

Query: 93  -EKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLD 151
            + W        +  +L   + + +    +P   II E V IA           +N +L 
Sbjct: 70  IKSW--------VRQLLWMSLYQYLYLDKIPNHAIIHEAVDIAKKRGGYHTGNIVNGILR 121

Query: 152 KVSRKE 157
            V R E
Sbjct: 122 TVMRTE 127


>gi|223943803|gb|ACN25985.1| unknown [Zea mays]
          Length = 284

 Score = 69.4 bits (169), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 29/138 (21%), Positives = 52/138 (37%), Gaps = 19/138 (13%)

Query: 34  GCSTTEIISEYETYRFCADTELDVES-----------VYLHVDLEWFRVIIHGVM----D 78
           G    E+ +E E  +  +  + D  +           VY +  L   R ++  V      
Sbjct: 136 GGGPLEVGTEQEAEKLASQNDKDSANEADVLSAPPKLVYNNYVLRLSRELLVAVASGWDK 195

Query: 79  RKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFF 138
               ID +I     ++   +R+  +   IL   + E+      P +V+I+E V +A  F 
Sbjct: 196 HVVIIDKIIPQAWKDE-PVARI--LELCILHIAMAEM-ASKGTPHKVVINEAVDLAKRFC 251

Query: 139 YGDEPKFINAVLDKVSRK 156
            G  P+ IN  L    + 
Sbjct: 252 DGGAPRVINGCLRTFVKD 269


>gi|258645366|ref|ZP_05732835.1| ribosomal RNA small subunit methyltransferase B [Dialister invisus
           DSM 15470]
 gi|260402715|gb|EEW96262.1| ribosomal RNA small subunit methyltransferase B [Dialister invisus
           DSM 15470]
          Length = 454

 Score = 69.4 bits (169), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 29/140 (20%), Positives = 51/140 (36%), Gaps = 13/140 (9%)

Query: 17  GIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGV 76
             AR  A +ALY+           I E   Y       +         +      +I+GV
Sbjct: 10  KSARTLAFEALYE-----------IFEKNAYANLTIQSILRWCPLKKEERHLLTELIYGV 58

Query: 77  MDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHD 136
             +  +   +IS  L       ++   +  +L  G+ +++    +P    ++E V IA  
Sbjct: 59  CRKYNYCLWMIS--LISDRPMFKIHPAVRILLALGIYQIVFLDRIPESAAVNETVKIAKK 116

Query: 137 FFYGDEPKFINAVLDKVSRK 156
             +    KFIN VL    R+
Sbjct: 117 VTHIGNVKFINGVLRNFLRR 136


>gi|331088259|ref|ZP_08337178.1| ribosomal RNA small subunit methyltransferase B [Lachnospiraceae
           bacterium 3_1_46FAA]
 gi|330408503|gb|EGG87969.1| ribosomal RNA small subunit methyltransferase B [Lachnospiraceae
           bacterium 3_1_46FAA]
          Length = 456

 Score = 69.4 bits (169), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 22/127 (17%), Positives = 46/127 (36%), Gaps = 6/127 (4%)

Query: 31  DIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSC 90
           +I+     E+              L         +  +   +  G ++    ID ++   
Sbjct: 9   EIVAAILMEVTENGRYSHIVLREVLTKYQYLEKRERAFITRVTEGTLEHMTEIDYILDCF 68

Query: 91  LTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA--HDFFYGDEPKFINA 148
              K    ++  ++ +ILR+ V ++    S+P   + SE V +A    F       ++N 
Sbjct: 69  --SKVKVKKMKPLIRAILRSAVYQIKYMDSIPDHAVCSESVKLAVKKGFSGLR--GYVNG 124

Query: 149 VLDKVSR 155
           VL  V +
Sbjct: 125 VLRSVVK 131


>gi|299136400|ref|ZP_07029583.1| Fmu (Sun) domain protein [Acidobacterium sp. MP5ACTX8]
 gi|298600915|gb|EFI57070.1| Fmu (Sun) domain protein [Acidobacterium sp. MP5ACTX8]
          Length = 456

 Score = 69.4 bits (169), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 30/138 (21%), Positives = 50/138 (36%), Gaps = 18/138 (13%)

Query: 19  ARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTEL--DVESVYLHVDLEWFRVIIHGV 76
           ARLAA               EI+    T    +D  L     ++    D      ++ G 
Sbjct: 41  ARLAAF--------------EILERVATSSAHSDDLLYGSGLALLSQADKNLTTALVLGT 86

Query: 77  MDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHD 136
           +  +  +D  I   L        L   + + LR G  +L+    +P    +SE V +A  
Sbjct: 87  LRWQIALDARIKPLLQR--PELTLAQPVQTALRLGAFQLLHMDRIPAHAALSESVELARA 144

Query: 137 FFYGDEPKFINAVLDKVS 154
             +      +NAVL K++
Sbjct: 145 AGHPYAVGMVNAVLRKLA 162


>gi|110004976|emb|CAK99307.1| hypothetical transcription factor involved in antitermination
           transcription regulator protein [Spiroplasma citri]
          Length = 126

 Score = 69.0 bits (168), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 21/81 (25%), Positives = 38/81 (46%), Gaps = 1/81 (1%)

Query: 73  IHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVC 132
           +  ++     I   I+  L   W F RL     ++L  GV E+   H +   ++I+E + 
Sbjct: 47  VEEILANLSDIIAKINQHLKPGWDFVRLSNYHKAVLVYGVYEICYQH-LAKAIVINESLE 105

Query: 133 IAHDFFYGDEPKFINAVLDKV 153
           I   +    +  +IN+VLD+V
Sbjct: 106 ILKLYGEDVDFSYINSVLDQV 126


>gi|57866755|ref|YP_188366.1| sun protein [Staphylococcus epidermidis RP62A]
 gi|242242499|ref|ZP_04796944.1| rRNA (cytosine-5-)-methyltransferase [Staphylococcus epidermidis
           W23144]
 gi|57637413|gb|AAW54201.1| sun protein [Staphylococcus epidermidis RP62A]
 gi|242234073|gb|EES36385.1| rRNA (cytosine-5-)-methyltransferase [Staphylococcus epidermidis
           W23144]
          Length = 435

 Score = 69.0 bits (168), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 24/126 (19%), Positives = 48/126 (38%), Gaps = 12/126 (9%)

Query: 35  CSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLT-- 92
            +  +++++   Y      E+   +    VD   F  +++G + RK  +D L+   +   
Sbjct: 11  ETINDVLNK-GAYSNLKINEVLSTNNINTVDKNLFTELVYGTLKRKYTLDYLLKPFIKTK 69

Query: 93  -EKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLD 151
            + W        +  +L   + + +    +P   II E V IA           +N +L 
Sbjct: 70  IKSW--------VRQLLWMSLYQYLYLDKIPNHAIIHEAVDIAKKRGGYHTGNIVNGILR 121

Query: 152 KVSRKE 157
            V R E
Sbjct: 122 TVMRTE 127


>gi|94971255|ref|YP_593303.1| sun protein [Candidatus Koribacter versatilis Ellin345]
 gi|94553305|gb|ABF43229.1| sun protein [Candidatus Koribacter versatilis Ellin345]
          Length = 432

 Score = 69.0 bits (168), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 20/100 (20%), Positives = 41/100 (41%), Gaps = 2/100 (2%)

Query: 56  DVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLEL 115
           D  +     D      ++ G +  +  +D L+++  ++     +LD+ +   LR    +L
Sbjct: 31  DRLNDLSAPDRGLATELVMGTLRWQSTLDALVATQSSQ--PLRKLDIEVLIALRLAAYQL 88

Query: 116 IECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSR 155
                +P    ++E V +           F NAVL K+S+
Sbjct: 89  QFLDRIPANAAVNESVELVKRARKRSAVPFANAVLRKISK 128


>gi|294811534|ref|ZP_06770177.1| Putative RNA-binding Sun protein [Streptomyces clavuligerus ATCC
           27064]
 gi|326440079|ref|ZP_08214813.1| RNA-binding Sun protein [Streptomyces clavuligerus ATCC 27064]
 gi|294324133|gb|EFG05776.1| Putative RNA-binding Sun protein [Streptomyces clavuligerus ATCC
           27064]
          Length = 481

 Score = 69.0 bits (168), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 27/153 (17%), Positives = 60/153 (39%), Gaps = 12/153 (7%)

Query: 7   KKDLKLSHR--RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHV 64
           ++  K   R  +   R+ A +AL  +D        ++            +   +  +   
Sbjct: 11  RRAAKPYRRPKKDPVRILAFEALRAVDERDAYANLVLPPLLR-------KAREKGDFDAR 63

Query: 65  DLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVE 124
           D      +++G +  +   D +I++C+        +D  +  +L  G  +L+    +P  
Sbjct: 64  DAALATELVYGTLRLQGTYDAVIAACVDR--PLREVDPPVLDVLSLGAHQLLGTR-IPSH 120

Query: 125 VIISEYVCIAHDFFYGDEPKFINAVLDKVSRKE 157
             +S  V +A         KF+NAVL +++R +
Sbjct: 121 AAVSATVELARVVLGDGRAKFVNAVLRRIARDD 153


>gi|269218512|ref|ZP_06162366.1| ribosomal RNA small subunit methyltransferase B [Actinomyces sp.
           oral taxon 848 str. F0332]
 gi|269211623|gb|EEZ77963.1| ribosomal RNA small subunit methyltransferase B [Actinomyces sp.
           oral taxon 848 str. F0332]
          Length = 534

 Score = 69.0 bits (168), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 33/140 (23%), Positives = 53/140 (37%), Gaps = 13/140 (9%)

Query: 17  GIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGV 76
             ARL A + L             + E + Y           +    +D  +   + +G 
Sbjct: 67  NAARLVAFEVL-----------RAVDEDDAYANLVLPVEIARAGLNKLDAAYATNLCYGT 115

Query: 77  MDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHD 136
           +  +   D +IS C  +      +D  +  +LR G  E +     P    I E V IA +
Sbjct: 116 LRMRGRWDAIISRC-AKGRRIYDIDPPVLDLLRMG-CEQLLAMETPPHAAIHETVVIARN 173

Query: 137 FFYGDEPKFINAVLDKVSRK 156
           FF      F+NAVL ++S K
Sbjct: 174 FFGQGTGGFVNAVLRRISEK 193


>gi|329730006|gb|EGG66397.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
           epidermidis VCU144]
          Length = 393

 Score = 69.0 bits (168), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 24/126 (19%), Positives = 48/126 (38%), Gaps = 12/126 (9%)

Query: 35  CSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLT-- 92
            +  +++++   Y      E+   +    VD   F  +++G + RK  +D L+   +   
Sbjct: 11  ETINDVLNK-GAYSNLKINEVLSTNNINTVDKNLFTELVYGTIKRKYTLDYLLKPFIKTK 69

Query: 93  -EKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLD 151
            + W        +  +L   + + +    +P   II E V IA           +N +L 
Sbjct: 70  IKSW--------VRQLLWMSLYQYLYLDKIPNHAIIHEAVDIAKKRGGFHTGNIVNGILR 121

Query: 152 KVSRKE 157
            V R E
Sbjct: 122 TVMRTE 127


>gi|118469121|ref|YP_887381.1| ribosomal RNA small subunit methyltransferase B [Mycobacterium
           smegmatis str. MC2 155]
 gi|118170408|gb|ABK71304.1| ribosomal RNA small subunit methyltransferase B [Mycobacterium
           smegmatis str. MC2 155]
          Length = 464

 Score = 69.0 bits (168), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 31/140 (22%), Positives = 49/140 (35%), Gaps = 14/140 (10%)

Query: 19  ARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMD 78
           AR  A   L             +SE + Y   A   +  E      D  +   + +G   
Sbjct: 20  ARRVAFDVL-----------RAVSERDAYANLALPAMLRERGIDGRDAAFATELTYGACR 68

Query: 79  RKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFF 138
               +D +I           R+D +L  +LR G  +L+    V     +S  V  A   F
Sbjct: 69  SLGLLDAVIERA--AGRPTDRIDPVLLDLLRLGTYQLL-RTRVEPHAAVSTTVEQAGIEF 125

Query: 139 YGDEPKFINAVLDKVSRKEE 158
                 F+N VL  +S ++E
Sbjct: 126 DSARAGFVNGVLRTISGRDE 145


>gi|240047408|ref|YP_002960796.1| hypothetical protein MCJ_002820 [Mycoplasma conjunctivae HRC/581]
 gi|239984980|emb|CAT04973.1| HYPOTHETICAL PROTEIN MCJ_002820 [Mycoplasma conjunctivae]
          Length = 133

 Score = 69.0 bits (168), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 29/138 (21%), Positives = 56/138 (40%), Gaps = 21/138 (15%)

Query: 26  ALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDL 85
            LYQ +++               F    ELD E +           +   +      +  
Sbjct: 6   LLYQSELLEEQIN------VGQIFQDHPELDSEQI----------KMFKFIAKNYSLLQK 49

Query: 86  LISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFF--YGDEP 143
           LI++ L  +W + R+  +  +IL  G+ EL         ++I+E + I+ +F      + 
Sbjct: 50  LIAAHLNSQWQWERILPLNRAILLYGISELFFSE---HRIVINEMIEISKEFTADGDKDY 106

Query: 144 KFINAVLDKVSRKEEIKR 161
            FINAV++ V +  + K+
Sbjct: 107 GFINAVIENVYQYLKRKK 124


>gi|153815686|ref|ZP_01968354.1| hypothetical protein RUMTOR_01922 [Ruminococcus torques ATCC 27756]
 gi|145846927|gb|EDK23845.1| hypothetical protein RUMTOR_01922 [Ruminococcus torques ATCC 27756]
          Length = 456

 Score = 69.0 bits (168), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 22/127 (17%), Positives = 46/127 (36%), Gaps = 6/127 (4%)

Query: 31  DIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSC 90
           +I+     E+              L         +  +   +  G ++    ID ++   
Sbjct: 9   EIVAAILMEVTENGRYSHIVLREVLTKYQYLEKRERAFITRVTEGTLEHMTEIDYILDCF 68

Query: 91  LTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA--HDFFYGDEPKFINA 148
              K    ++  ++ +ILR+ V ++    S+P   + SE V +A    F       ++N 
Sbjct: 69  --SKVKVKKMKPLIRAILRSAVYQIKYMDSIPDHAVCSESVKLAVKKGFSGLR--GYVNG 124

Query: 149 VLDKVSR 155
           VL  V +
Sbjct: 125 VLRSVVK 131


>gi|27467810|ref|NP_764447.1| RNA-binding Sun protein [Staphylococcus epidermidis ATCC 12228]
 gi|293366818|ref|ZP_06613494.1| RNA methyltransferase Sun [Staphylococcus epidermidis
           M23864:W2(grey)]
 gi|27315354|gb|AAO04489.1|AE016746_279 RNA-binding Sun protein [Staphylococcus epidermidis ATCC 12228]
 gi|291319119|gb|EFE59489.1| RNA methyltransferase Sun [Staphylococcus epidermidis
           M23864:W2(grey)]
 gi|329736213|gb|EGG72485.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
           epidermidis VCU028]
 gi|329736541|gb|EGG72807.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
           epidermidis VCU045]
          Length = 435

 Score = 69.0 bits (168), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 24/126 (19%), Positives = 48/126 (38%), Gaps = 12/126 (9%)

Query: 35  CSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLT-- 92
            +  +++++   Y      E+   +    VD   F  +++G + RK  +D L+   +   
Sbjct: 11  ETINDVLNK-GAYSNLKINEVLSTNNINTVDKNLFTELVYGTIKRKYTLDYLLKPFIKTK 69

Query: 93  -EKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLD 151
            + W        +  +L   + + +    +P   II E V IA           +N +L 
Sbjct: 70  IKSW--------VRQLLWMSLYQYLYLDKIPNHAIIHEAVDIAKKRGGFHTGNIVNGILR 121

Query: 152 KVSRKE 157
            V R E
Sbjct: 122 TVMRTE 127


>gi|94266702|ref|ZP_01290375.1| Fmu, rRNA SAM-dependent methyltransferase [delta proteobacterium
           MLMS-1]
 gi|93452643|gb|EAT03206.1| Fmu, rRNA SAM-dependent methyltransferase [delta proteobacterium
           MLMS-1]
          Length = 484

 Score = 69.0 bits (168), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 32/168 (19%), Positives = 63/168 (37%), Gaps = 33/168 (19%)

Query: 1   MTIQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESV 60
           MT  DN             R   +Q L   +  G    +++         AD        
Sbjct: 1   MTPTDNI------------RRVTLQLLLVQEQSGQPVEQLLEHRLREHPLAD-------- 40

Query: 61  YLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHS 120
               D      +++GV+  +  +D +++         +++  +  + LR G+L+L+    
Sbjct: 41  --GRDRRLLEALVYGVLRWRGLLDQVVAGYARH--PLAKMKPLTLAALRLGILQLLILER 96

Query: 121 VPVEVIISEYVCIAHDFFYGDEPK----FINAVLDKVSRKEEIKRSGC 164
           +P    I+E +          +P+    F+NAVL K +   +I+R G 
Sbjct: 97  LPASAAINETI---KALRAARQPRWLTGFVNAVLRKAA--ADIERLGR 139


>gi|270290371|ref|ZP_06196596.1| ribosomal RNA small subunit methyltransferase B [Pediococcus
           acidilactici 7_4]
 gi|270281152|gb|EFA26985.1| ribosomal RNA small subunit methyltransferase B [Pediococcus
           acidilactici 7_4]
          Length = 444

 Score = 69.0 bits (168), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 28/137 (20%), Positives = 52/137 (37%), Gaps = 15/137 (10%)

Query: 20  RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79
           R  AV AL  ID    S  E+             ++  ++    VD      +++GV+  
Sbjct: 9   RDLAVDALESIDEGAYSNLEL------------NQVIQDADLSEVDKHLLTELVYGVLQH 56

Query: 80  KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139
           +  ID  +++ L       +    + ++LR  + ++     VP   I +E + IA     
Sbjct: 57  RLTIDFYLANFLQR---PEQTPRWVINLLRTAIFQMEFLDRVPTFAIFNETIEIAKRRGS 113

Query: 140 GDEPKFINAVLDKVSRK 156
               K +  VL    R+
Sbjct: 114 DGVRKMVTGVLRSYQRQ 130


>gi|309810728|ref|ZP_07704536.1| putative ribosomal RNA small subunit methyltransferase B
           [Dermacoccus sp. Ellin185]
 gi|308435359|gb|EFP59183.1| putative ribosomal RNA small subunit methyltransferase B
           [Dermacoccus sp. Ellin185]
          Length = 489

 Score = 69.0 bits (168), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 33/160 (20%), Positives = 62/160 (38%), Gaps = 18/160 (11%)

Query: 1   MTIQDNKKDLKLSHRRGI---ARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDV 57
           M    ++ +   S RR     AR AA+  L               +   Y      ++  
Sbjct: 1   MRGAGHRSEQAPSARRRTGDPARSAALAVL------------RAVDDGAYANLEMPKVLT 48

Query: 58  ESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIE 117
                  D  +   +  G + R+   D +I +      + S++D ++ ++LR GV +++ 
Sbjct: 49  RHDLSGRDAAFATELALGTIRRQGFYDRVIET--GSGRAPSQIDPVVLAVLRLGVHQILS 106

Query: 118 CHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKE 157
              VPV    SE V +A +        F+NAVL +   ++
Sbjct: 107 MR-VPVHAATSETVALAREHAGSGAAGFVNAVLRRAGERD 145


>gi|169333678|ref|ZP_02860871.1| hypothetical protein ANASTE_00062 [Anaerofustis stercorihominis DSM
           17244]
 gi|169259672|gb|EDS73638.1| hypothetical protein ANASTE_00062 [Anaerofustis stercorihominis DSM
           17244]
          Length = 450

 Score = 68.6 bits (167), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 29/155 (18%), Positives = 71/155 (45%), Gaps = 19/155 (12%)

Query: 8   KDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLE 67
           K++K+S     +R++A + L ++ + G  +   ++++              S+ +  D  
Sbjct: 3   KNIKISP----SRVSAYKVLSEVLMTGAYSNIALTKHLA------------SIKIEADRR 46

Query: 68  WFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVII 127
               I+HGV+ +   ++ ++S+        + LD  +   L  G+ ++I  + +P   I+
Sbjct: 47  LCTNIVHGVIKKINKLEYVLSTL--SNTPVNELDERVKISLYIGLYQIIYLNKIPEYAIV 104

Query: 128 SEYVCIAHDFFYGDEPKFINAVL-DKVSRKEEIKR 161
           ++ V +   F       F+N +L + + +K E+K 
Sbjct: 105 NDSVNLVKMFVGKKASGFVNGILRNALRKKHELKE 139


>gi|160893330|ref|ZP_02074117.1| hypothetical protein CLOL250_00879 [Clostridium sp. L2-50]
 gi|156865022|gb|EDO58453.1| hypothetical protein CLOL250_00879 [Clostridium sp. L2-50]
          Length = 449

 Score = 68.6 bits (167), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 27/141 (19%), Positives = 49/141 (34%), Gaps = 12/141 (8%)

Query: 17  GIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGV 76
             +R   +  L  I+       E + E           L         +  +   +  GV
Sbjct: 3   KTSREIVLDILLDIEKNDRFAGEALGE----------ALRANQFMNKKERAYIGRLTEGV 52

Query: 77  MDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHD 136
            ++K  +D +++     K        ++  ILR    E+    SVP E   +EYV +   
Sbjct: 53  TEQKIRLDYILNQFSKVKVKKC--KPVIRCILRMAAYEIFYMDSVPDEAACNEYVNLTAK 110

Query: 137 FFYGDEPKFINAVLDKVSRKE 157
             +     ++N VL  V R +
Sbjct: 111 RGFRTLKGYMNGVLRNVCRNK 131


>gi|259047043|ref|ZP_05737444.1| RNA methyltransferase Sun [Granulicatella adiacens ATCC 49175]
 gi|259036093|gb|EEW37348.1| RNA methyltransferase Sun [Granulicatella adiacens ATCC 49175]
          Length = 440

 Score = 68.6 bits (167), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 23/91 (25%), Positives = 41/91 (45%), Gaps = 3/91 (3%)

Query: 65  DLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVE 124
           D      + +G + RK  +D  +   + ++    ++++ + S+LR  V ++     VP  
Sbjct: 39  DRGLLTELFYGTIQRKLTLDFYLKPFIEKQ---KKMELWVLSLLRMTVYQMAYLDRVPDH 95

Query: 125 VIISEYVCIAHDFFYGDEPKFINAVLDKVSR 155
             I E V IA    +    KF+N VL  V R
Sbjct: 96  AAIFEAVQIAKKRGHQGIAKFVNGVLRNVQR 126


>gi|33242357|ref|NP_877298.1| transcription antitermination protein NusB [Chlamydophila
           pneumoniae TW-183]
 gi|33236868|gb|AAP98955.1| hypothetical protein CpB1026 [Chlamydophila pneumoniae TW-183]
          Length = 131

 Score = 68.6 bits (167), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 25/139 (17%), Positives = 59/139 (42%), Gaps = 12/139 (8%)

Query: 24  VQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHI 83
           +Q LY +D+   +   ++    +    +   + V                  ++++ Q +
Sbjct: 1   MQMLYALDMAPSAEDSLVPLLMSQTAVSQKHVLVALNQTKS-----------ILEKSQEL 49

Query: 84  DLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEP 143
           DL+I + L +  SF  LD++  ++LR  + E      +   ++I+E + +   F Y +  
Sbjct: 50  DLIIGNAL-KNKSFDSLDLVEKNVLRLTLFEHFYSPPINKAILIAEAIRLVKKFSYSEAC 108

Query: 144 KFINAVLDKVSRKEEIKRS 162
            FI A+L+ +     +  +
Sbjct: 109 PFIQAILNDIFTDSSLNEN 127


>gi|304384751|ref|ZP_07367097.1| ribosomal RNA small subunit methyltransferase B [Pediococcus
           acidilactici DSM 20284]
 gi|304328945|gb|EFL96165.1| ribosomal RNA small subunit methyltransferase B [Pediococcus
           acidilactici DSM 20284]
          Length = 444

 Score = 68.6 bits (167), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 28/137 (20%), Positives = 52/137 (37%), Gaps = 15/137 (10%)

Query: 20  RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79
           R  AV AL  ID    S  E+             ++  ++    VD      +++GV+  
Sbjct: 9   RDLAVDALESIDEGAYSNLEL------------NQVIQDADLSEVDKHLLTELVYGVLQH 56

Query: 80  KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139
           +  ID  +++ L       +    + ++LR  + ++     VP   I +E + IA     
Sbjct: 57  RLTIDFYLANFLQR---PEQTPRWVINLLRTAIFQMEFLDRVPTFAIFNETIEIAKRRGS 113

Query: 140 GDEPKFINAVLDKVSRK 156
               K +  VL    R+
Sbjct: 114 DGVRKMVTGVLRSYQRQ 130


>gi|226509581|ref|NP_001146662.1| hypothetical protein LOC100280262 [Zea mays]
 gi|219888225|gb|ACL54487.1| unknown [Zea mays]
          Length = 555

 Score = 68.6 bits (167), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 27/96 (28%), Positives = 47/96 (48%), Gaps = 1/96 (1%)

Query: 63  HVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVP 122
             D+    VI+ G +  K+++D LI S  +E+  F  ++ +L  ILR G  E+++   VP
Sbjct: 138 DRDIRLVTVIVAGTVRWKRYLDYLIMSLCSEEKVFREMEPLLLQILRIGFFEILK-LDVP 196

Query: 123 VEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEE 158
               + E V +A           +NA+L K+   +E
Sbjct: 197 AYAAVDENVRLAKVALRPGAGNMVNAILRKLVLLKE 232


>gi|295839959|ref|ZP_06826892.1| conserved hypothetical protein [Streptomyces sp. SPB74]
 gi|295827723|gb|EFG65557.1| conserved hypothetical protein [Streptomyces sp. SPB74]
          Length = 296

 Score = 68.2 bits (166), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 26/146 (17%), Positives = 57/146 (39%), Gaps = 10/146 (6%)

Query: 12  LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71
            + R+   R+ A  AL  +D        ++            E   +  +   D      
Sbjct: 22  RAPRKDPVRVLAFDALRAVDERDAYANLVLPALLR-------EAREKGGFDARDAALATE 74

Query: 72  IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
           +++G +  +   D +I++C+        +D  +  +L  G  +L+    +P    +S  V
Sbjct: 75  LVYGTLRGRGTYDAVIAACVDR--PLREVDPPVLDVLSLGAHQLLGTR-IPTHAAVSATV 131

Query: 132 CIAHDFFYGDEPKFINAVLDKVSRKE 157
            +A         +F+NAVL +++R +
Sbjct: 132 ELARVVLGDGRSRFVNAVLRRIARND 157


>gi|319939671|ref|ZP_08014030.1| ribosomal RNA small subunit methyltransferase B [Streptococcus
           anginosus 1_2_62CV]
 gi|319811260|gb|EFW07566.1| ribosomal RNA small subunit methyltransferase B [Streptococcus
           anginosus 1_2_62CV]
          Length = 437

 Score = 68.2 bits (166), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 31/145 (21%), Positives = 60/145 (41%), Gaps = 15/145 (10%)

Query: 12  LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71
           + ++   AR  A+ A++          E +     Y   A  +  +E      D      
Sbjct: 1   MVNKIKTARQTAL-AVF----------EAVFSEGAYSNIALNQTLLEVPLSSADKGLVTE 49

Query: 72  IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
           I++G + RK  ++  +S  + E     +LD  L  +L   + ++     +P   +++E V
Sbjct: 50  IVYGTVARKITLEWYLS-HVIENR--DKLDSWLYILLLMSLYQIQYLDKIPAHAVVNEAV 106

Query: 132 CIAHDFFYGDEPKFINAVLDKVSRK 156
            +A     G   KF+NAVL ++ R 
Sbjct: 107 ELAKARKKG-SEKFVNAVLRRLLRD 130


>gi|116788226|gb|ABK24800.1| unknown [Picea sitchensis]
          Length = 324

 Score = 68.2 bits (166), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 28/193 (14%), Positives = 59/193 (30%), Gaps = 49/193 (25%)

Query: 17  GIARLAAVQALYQIDIIGCST-------------------------------------TE 39
             AR  A+  LY+  + G                                        TE
Sbjct: 109 RAAREFALVVLYEACVEGSDPLRLFERRMNMKTAMSAQFDQTLLEYYDHMHFCGTPLYTE 168

Query: 40  IISEYETYRFCADTELDVESVYLHVDLEW---------FRVIIHGVMDRKQHIDLLISSC 90
              +    +   + E   E+  L    +           + I+  V++R      ++   
Sbjct: 169 TEEQARVLQMEDEKEALTEAAILAAPPKLVYNKFVLSMTKKILAAVVERWDEQASILDES 228

Query: 91  LTEKWSFSRLDMI-LCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAV 149
           +  KW       I    ++   + E++       +V+I+E + +A  F  G  P+ IN  
Sbjct: 229 IPSKWKDESAGRILELCLMHIAMAEIV-VLGTQYQVVINEAIDLAKRFCDGASPRIINGC 287

Query: 150 LDK-VSRKEEIKR 161
           L   + ++  + +
Sbjct: 288 LRSFIVKENFVGK 300


>gi|332366359|gb|EGJ44110.1| RNA methyltransferase Sun [Streptococcus sanguinis SK355]
          Length = 438

 Score = 68.2 bits (166), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 32/146 (21%), Positives = 61/146 (41%), Gaps = 15/146 (10%)

Query: 12  LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71
           +  ++  AR  A++ L           E+  E   Y   A      +S     D      
Sbjct: 1   MESKQKKARWQALEIL----------EEVFEE-GAYSNIAINRALSQSQLSQADKGLVTE 49

Query: 72  IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
           +++G + RK  ++  +S  L E     +LD  L  +L   + +++    +P   ++ E V
Sbjct: 50  LVYGTVARKITLEWYLS-HLIEDR--DKLDNWLYILLELSLYQMLYLDKIPQHAVVHEAV 106

Query: 132 CIAHDFFYGDEPKFINAVLDKVSRKE 157
            IA     G   KF+NA+L ++ R++
Sbjct: 107 EIAKIRKRG-SEKFVNALLRRIERED 131


>gi|242045062|ref|XP_002460402.1| hypothetical protein SORBIDRAFT_02g027560 [Sorghum bicolor]
 gi|241923779|gb|EER96923.1| hypothetical protein SORBIDRAFT_02g027560 [Sorghum bicolor]
          Length = 574

 Score = 68.2 bits (166), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 27/96 (28%), Positives = 47/96 (48%), Gaps = 1/96 (1%)

Query: 63  HVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVP 122
             D+    VI+ G +  K+++D LI S  +E+  F  ++ +L  ILR G  E+++   VP
Sbjct: 157 DRDIRLVTVIVAGTVRWKRYLDYLIMSLCSEEKVFREMEPLLLQILRIGFFEILK-LDVP 215

Query: 123 VEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEE 158
               + E V +A           +NA+L K+   +E
Sbjct: 216 AYAAVDENVKLAKVALRPGAGNMVNAILRKLVLLKE 251


>gi|317051327|ref|YP_004112443.1| NusB/RsmB/TIM44 [Desulfurispirillum indicum S5]
 gi|316946411|gb|ADU65887.1| NusB/RsmB/TIM44 [Desulfurispirillum indicum S5]
          Length = 133

 Score = 68.2 bits (166), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 27/143 (18%), Positives = 56/143 (39%), Gaps = 16/143 (11%)

Query: 10  LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF 69
           +     R   R  A++  Y + I   S  E   +    +F  +              E+ 
Sbjct: 1   MIPVPTRRNQRENALKLNYALQIFSGSFDEPHIQRTASQFGMEV------------TEFT 48

Query: 70  RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISE 129
           R ++   +        LI S L +      +  +   ++  G+ EL   HS P + +I+E
Sbjct: 49  RELVQISLQANPACGQLIES-LAKNDDM--IAHLDRILMIQGMCELSMKHS-PAQTVINE 104

Query: 130 YVCIAHDFFYGDEPKFINAVLDK 152
           Y+ +A  +   +  +F+N V+++
Sbjct: 105 YIELAKLYGAENSFRFVNVVMNQ 127


>gi|168019738|ref|XP_001762401.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162686479|gb|EDQ72868.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 465

 Score = 68.2 bits (166), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 23/87 (26%), Positives = 45/87 (51%), Gaps = 2/87 (2%)

Query: 73  IHGVMDRKQHIDLLISSCLTEK-WSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
           + G++  K+++D LI S   +    + R++ +L  ILR G+ ELI+   +P   +++E V
Sbjct: 51  VAGIVRWKRYLDFLIFSFFKQDVRDYDRMEPLLRQILRVGLYELIK-LEMPPHAVLNETV 109

Query: 132 CIAHDFFYGDEPKFINAVLDKVSRKEE 158
            +A           +N +L  V R ++
Sbjct: 110 QLAKVALRAGAGNLVNGLLRDVVRHQD 136


>gi|227890677|ref|ZP_04008482.1| 16S rRNA m(5)C 967 methyltransferase [Lactobacillus salivarius ATCC
           11741]
 gi|227867615|gb|EEJ75036.1| 16S rRNA m(5)C 967 methyltransferase [Lactobacillus salivarius ATCC
           11741]
          Length = 445

 Score = 68.2 bits (166), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 28/142 (19%), Positives = 59/142 (41%), Gaps = 14/142 (9%)

Query: 15  RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74
           +    RL AV+ L          T + S+  TY   A  ++  E+     D +    I++
Sbjct: 2   KNKTVRLLAVELL----------TRVESQ-GTYSNLALNKVIEENNLSVKDTKLLTTIVY 50

Query: 75  GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134
           GV+  K  ++  +   + +    +RL + +  +L   + +++    +P   + +E + IA
Sbjct: 51  GVIQHKLTLEYWLEPFIKKA---NRLQLWVKELLLVSLYQMVYLDKIPDRAVFNESIEIA 107

Query: 135 HDFFYGDEPKFINAVLDKVSRK 156
               +    KF+  VL  + R 
Sbjct: 108 KIKGHTGIRKFVTGVLHSIRRN 129


>gi|207110956|ref|ZP_03245118.1| transcription antitermination protein NusB [Helicobacter pylori
           HPKX_438_CA4C1]
          Length = 74

 Score = 67.8 bits (165), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 19/64 (29%), Positives = 30/64 (46%), Gaps = 1/64 (1%)

Query: 57  VESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELI 116
            E    +  L +   + +GV++R   ID LI   L + W F RL  +  +ILR G  E+ 
Sbjct: 11  EEKKIKNNQLAFALSLFNGVLERINEIDALIEPHL-KDWDFKRLGSMEKAILRLGAYEIG 69

Query: 117 ECHS 120
              +
Sbjct: 70  FTPT 73


>gi|254775818|ref|ZP_05217334.1| Fmu [Mycobacterium avium subsp. avium ATCC 25291]
          Length = 390

 Score = 67.8 bits (165), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 31/140 (22%), Positives = 53/140 (37%), Gaps = 14/140 (10%)

Query: 19  ARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMD 78
           AR AA + L             +SE + Y   A   L  E      D  +   + +G   
Sbjct: 19  ARGAAFEVL-----------RAVSERDAYANLALPALLRERGITGRDAAFATELTYGTCR 67

Query: 79  RKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFF 138
            +  +D +I +          +D +L  +LR G  +L+    V     +S  V  A   F
Sbjct: 68  TRGLLDAVIGAA--AGRPPEAIDPVLLDLLRLGTYQLL-RTRVDAHAAVSTTVEQAAIEF 124

Query: 139 YGDEPKFINAVLDKVSRKEE 158
                 F+N VL +++ ++E
Sbjct: 125 GSARAGFVNGVLRRIAGRDE 144


>gi|170016869|ref|YP_001727788.1| putative rRNA methylase [Leuconostoc citreum KM20]
 gi|169803726|gb|ACA82344.1| Putative rRNA methylase [Leuconostoc citreum KM20]
          Length = 450

 Score = 67.8 bits (165), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 25/148 (16%), Positives = 58/148 (39%), Gaps = 19/148 (12%)

Query: 12  LSHRRGIA---RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEW 68
           +S +R  +   R+ AVQ L               +   Y      ++  +      D   
Sbjct: 1   MSDKRVYSNNPRVLAVQTL------------AKIKNGAYSNLQLNQVIKKHALNDSDKRL 48

Query: 69  FRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIIS 128
              +++GV+  +   D  ++  + +K    +++  +  +L   + +L     +P   I +
Sbjct: 49  LTTLVYGVIQHRLTFDYWLTPFIKQK----KIEPWVRELLYTALFQLQYLDKIPQHAIFN 104

Query: 129 EYVCIAHDFFYGDEPKFINAVLDKVSRK 156
           E + +A    +    KF+ A+L  +SR+
Sbjct: 105 ESIEVAKTLGHIGTAKFVTAILHNISRQ 132


>gi|315612653|ref|ZP_07887565.1| ribosomal RNA small subunit methyltransferase B [Streptococcus
           sanguinis ATCC 49296]
 gi|315315240|gb|EFU63280.1| ribosomal RNA small subunit methyltransferase B [Streptococcus
           sanguinis ATCC 49296]
          Length = 437

 Score = 67.8 bits (165), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 30/139 (21%), Positives = 56/139 (40%), Gaps = 15/139 (10%)

Query: 18  IARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVM 77
            AR  A+  L           E +   + Y   A  +    S     D      I++G +
Sbjct: 6   TARSLALAVL-----------EDVFINQAYSNIALNKHLKGSQLSEADKSLVTEIVYGTV 54

Query: 78  DRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDF 137
            RK  ++  +S  + ++    +LD  L  +L     +L     +P   +++E V +A + 
Sbjct: 55  ARKLTLEWYLSHFIEDR---DKLDNWLYILLLLSAYQLRYLDKIPNHAVVNEAVELAKER 111

Query: 138 FYGDEPKFINAVLDKVSRK 156
             G   K +NAVL ++ R+
Sbjct: 112 KKG-SEKLVNAVLRRILRE 129


>gi|327462453|gb|EGF08778.1| RNA methyltransferase Sun [Streptococcus sanguinis SK1057]
          Length = 438

 Score = 67.8 bits (165), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 32/145 (22%), Positives = 61/145 (42%), Gaps = 15/145 (10%)

Query: 12  LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71
           +  ++  AR  A++ L           E+  E   Y   A      +S     D      
Sbjct: 1   MESKQKTARWQALEIL----------EEVFEE-RAYSNIALNRALSQSPLSQADKGLVTE 49

Query: 72  IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
           +++G + RK  ++  +S  L E     +LD  L  +L   + +++    +P   ++ E V
Sbjct: 50  LVYGTVARKITLEWYLS-HLIEDR--DKLDSWLYILLMISLYQMLYLDKIPQHAVVHEAV 106

Query: 132 CIAHDFFYGDEPKFINAVLDKVSRK 156
            IA    +G   KF+NA+L ++ R+
Sbjct: 107 EIAKIRKHG-SEKFVNALLRRIERE 130


>gi|255325951|ref|ZP_05367041.1| ribosomal RNA small subunit methyltransferase B [Rothia
           mucilaginosa ATCC 25296]
 gi|255296966|gb|EET76293.1| ribosomal RNA small subunit methyltransferase B [Rothia
           mucilaginosa ATCC 25296]
          Length = 659

 Score = 67.8 bits (165), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 33/168 (19%), Positives = 63/168 (37%), Gaps = 22/168 (13%)

Query: 2   TIQDNKKDLKLSHRRGIARLAAVQALYQI----------DIIGCSTTEII---SEYETYR 48
           T Q NK   + + R   AR       +            D    +  +++   +E + Y 
Sbjct: 130 TSQRNKSGHERNRRSMSARE------FSAAAPSARSRTADTARATVFDVLRSVAESDAYA 183

Query: 49  FCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSIL 108
                +        H D  +   + +G +  +   D ++S C+       ++      +L
Sbjct: 184 NLVLPKAIRSHRLDHRDAGFATELTYGTLRHQGTYDAILSRCVDR--PIEKVGTTTLIVL 241

Query: 109 RAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRK 156
           R GV +L+    VP    +++ V +A +        FINAVL +VS +
Sbjct: 242 RMGVHQLLNMR-VPAHAALNQSVSLAREKIGAGPASFINAVLRRVSER 288


>gi|326487822|dbj|BAK05583.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 546

 Score = 67.8 bits (165), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 28/91 (30%), Positives = 48/91 (52%), Gaps = 1/91 (1%)

Query: 63  HVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVP 122
             D+    VI+ G +  K++ID LI S  +E+  FS ++ +L  ILR G  E+++  +VP
Sbjct: 129 DRDIRLVTVIVAGTVRWKRYIDYLIMSLCSEEKVFSNMEPLLLQILRIGFYEILK-LNVP 187

Query: 123 VEVIISEYVCIAHDFFYGDEPKFINAVLDKV 153
              ++ E V +A           +NA+L K+
Sbjct: 188 AYAVVDENVRLAKVALRPGAGNMVNAILRKL 218


>gi|291166482|gb|EFE28528.1| ribosomal RNA small subunit methyltransferase B [Filifactor alocis
           ATCC 35896]
          Length = 440

 Score = 67.8 bits (165), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 16/99 (16%), Positives = 41/99 (41%), Gaps = 3/99 (3%)

Query: 62  LHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSV 121
           +  D  ++  +++G ++  + +D +I           +L   + +IL   + ++     V
Sbjct: 36  IDRDRVFYTELVYGTLENIKFLDYVIDKF--SNVKVDKLSKEVLTILEVSLYQIHYMDGV 93

Query: 122 PVEVIISEYVCIAH-DFFYGDEPKFINAVLDKVSRKEEI 159
               +++E V +A   +     P F+N +L  + R    
Sbjct: 94  QNFAVVNEMVNLAKVVWHNARIPSFVNGILRNILRNPNA 132


>gi|290961866|ref|YP_003493048.1| RNA-binding Sun protein [Streptomyces scabiei 87.22]
 gi|260651392|emb|CBG74514.1| putative RNA-binding Sun protein [Streptomyces scabiei 87.22]
          Length = 452

 Score = 67.8 bits (165), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 26/134 (19%), Positives = 52/134 (38%), Gaps = 7/134 (5%)

Query: 22  AAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQ 81
            A +AL  +D        ++          +        +   D      +++G + R+ 
Sbjct: 2   LAFEALRAVDERDAYANLVLPPLLRRARQKE----GPEKFDARDAALATELVYGTLRRQG 57

Query: 82  HIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGD 141
             D +I+SC+        +D  +  +L  G  +L+    +P    +S  V +A       
Sbjct: 58  TYDAVIASCVDR--PLREVDPPVLDVLSLGAHQLLGTR-IPTHAAVSASVDLARVVLGDG 114

Query: 142 EPKFINAVLDKVSR 155
             KF+NAVL K+++
Sbjct: 115 RAKFVNAVLRKIAQ 128


>gi|289644960|ref|ZP_06477001.1| NusB/RsmB/TIM44 [Frankia symbiont of Datisca glomerata]
 gi|289505233|gb|EFD26291.1| NusB/RsmB/TIM44 [Frankia symbiont of Datisca glomerata]
          Length = 518

 Score = 67.8 bits (165), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 26/153 (16%), Positives = 51/153 (33%), Gaps = 14/153 (9%)

Query: 7   KKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDL 66
           ++    + R   ARL A       ++        + E   Y       L         D 
Sbjct: 13  QRARPPASRADPARLLA------WEV-----LRAVDERGAYANLLLPALLAGRQLSARDR 61

Query: 67  EWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVI 126
            +   + +G +     +D L+++          +D  +   LR G  +L+    VP    
Sbjct: 62  GFATELTYGTLRALGVLDGLLAT--VANRPVDEVDPPVRDALRLGAYQLL-RTRVPARAA 118

Query: 127 ISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEI 159
           +   V +          +F NAVL +++ + E 
Sbjct: 119 VDSTVDLVRRTSGERPVRFANAVLRRLAARLEA 151


>gi|188585963|ref|YP_001917508.1| sun protein [Natranaerobius thermophilus JW/NM-WN-LF]
 gi|179350650|gb|ACB84920.1| sun protein [Natranaerobius thermophilus JW/NM-WN-LF]
          Length = 462

 Score = 67.8 bits (165), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 29/142 (20%), Positives = 55/142 (38%), Gaps = 13/142 (9%)

Query: 17  GIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGV 76
             +R  A            + T II + + Y      +L  ++  L  D      I +G 
Sbjct: 4   KSSRELAF----------VAYTRIIQD-QAYSNLVLNQLLGKTDLLAQDKALASRITYGT 52

Query: 77  MDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHD 136
           +  +  ID  + +        S+L      +LR G  +++    VP    ++E V +AH 
Sbjct: 53  LQWQGLIDYYLKTLSHR--PLSKLSNKALFLLRMGAYQILFLDRVPPSASVNETVKVAHR 110

Query: 137 FFYGDEPKFINAVLDKVSRKEE 158
             +     F+N +L  + RK++
Sbjct: 111 RTHKGIANFVNGILRNLIRKKD 132


>gi|268316481|ref|YP_003290200.1| sun protein [Rhodothermus marinus DSM 4252]
 gi|262334015|gb|ACY47812.1| sun protein [Rhodothermus marinus DSM 4252]
          Length = 453

 Score = 67.4 bits (164), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 20/91 (21%), Positives = 38/91 (41%), Gaps = 3/91 (3%)

Query: 69  FRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIIS 128
               + GV   ++ +D L++        +  ++  L  ILR G+ EL+     P    ++
Sbjct: 52  ATEYVAGVTRWRRWLDFLLAQNYRG--RYDSMEPRLRQILRLGLYELLFT-DTPPYAALN 108

Query: 129 EYVCIAHDFFYGDEPKFINAVLDKVSRKEEI 159
           E V +A           +NAVL  + R+ + 
Sbjct: 109 EAVELARRLVRPQAGAVVNAVLRSLLRQRDF 139


>gi|261885488|ref|ZP_06009527.1| transcription antitermination protein NusB [Campylobacter fetus
           subsp. venerealis str. Azul-94]
          Length = 92

 Score = 67.4 bits (164), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 21/102 (20%), Positives = 38/102 (37%), Gaps = 13/102 (12%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           R   R + V  LY   + G    E  +E+       + +             +   + +G
Sbjct: 4   RHQVRQSVVSLLYANQM-GSEMEEFSNEFLEETKIRNDQ-----------KSFTLTLYNG 51

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIE 117
           V+D    ID  + + L + W    +  +  +ILR G  +LI 
Sbjct: 52  VLDNLNLIDEALDAHLGK-WKLVEIGAVERAILRLGAYKLIY 92


>gi|56750589|ref|YP_171290.1| sun protein [Synechococcus elongatus PCC 6301]
 gi|56685548|dbj|BAD78770.1| sun protein [Synechococcus elongatus PCC 6301]
          Length = 405

 Score = 67.4 bits (164), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 20/90 (22%), Positives = 45/90 (50%), Gaps = 2/90 (2%)

Query: 71  VIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEY 130
            +++G + R++ +D LI   L  +   ++   +L ++L+ G+ +L     +P    ++E 
Sbjct: 3   ELVYGCVRRQRTLDALID--LLAQRPAAQQPPVLRTVLQLGLYQLRYLEQIPTAAAVAET 60

Query: 131 VCIAHDFFYGDEPKFINAVLDKVSRKEEIK 160
           V +A     G     +NA+L +  R+ E +
Sbjct: 61  VQLAKQLGLGGLSGAVNAILRQYLRQSEER 90


>gi|284050071|ref|ZP_06380281.1| Fmu, rRNA SAM-dependent methyltransferase [Arthrospira platensis
           str. Paraca]
 gi|291566504|dbj|BAI88776.1| ribosomal RNA small subunit methyltransferase B [Arthrospira
           platensis NIES-39]
          Length = 447

 Score = 67.4 bits (164), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 27/143 (18%), Positives = 48/143 (33%), Gaps = 13/143 (9%)

Query: 20  RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79
           R  A   L  I   G     ++ E        D            D      +++G   R
Sbjct: 6   RQLAFVTLRDIQRRGAFADIVLDEKLRQADLKD-----------ADRRLGTELVYGCTRR 54

Query: 80  KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139
           ++ +D +I   L +K    +    L  IL  G+ +L    ++P    ++  V +      
Sbjct: 55  RRTLDAIIDR-LAKK-PAHQQPPDLRIILHLGLYQLCFSSNIPPSAAVNTTVDLTKVNNL 112

Query: 140 GDEPKFINAVLDKVSRKEEIKRS 162
                F+N +L +  R  E   S
Sbjct: 113 SGLGGFVNGLLRQYLRLVEAGNS 135


>gi|283457829|ref|YP_003362427.1| tRNA and rRNA cytosine-C5-methylase [Rothia mucilaginosa DY-18]
 gi|283133842|dbj|BAI64607.1| tRNA and rRNA cytosine-C5-methylase [Rothia mucilaginosa DY-18]
          Length = 697

 Score = 67.4 bits (164), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 33/168 (19%), Positives = 62/168 (36%), Gaps = 22/168 (13%)

Query: 2   TIQDNKKDLKLSHRRGIARLAAVQALYQI----------DIIGCSTTEII---SEYETYR 48
           T Q NK   + + R   AR       +            D    +  E++   +E + Y 
Sbjct: 168 TSQRNKSGHERNRRSMSARE------FSAAAPSARSRTADTARATVFEVLRSVAESDAYA 221

Query: 49  FCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSIL 108
                +        H D  +   + +G +  +   D ++  C+       ++      +L
Sbjct: 222 NLVLPKAIRSHRLDHRDAGFATELTYGTLRHQGTYDAILRHCVDR--PLEKVGTTTLIVL 279

Query: 109 RAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRK 156
           R GV +L+    VP    +++ V +A +        FINAVL +VS +
Sbjct: 280 RMGVHQLLNMR-VPAHAALNQSVSLAREKIGAGPASFINAVLRRVSER 326


>gi|125587334|gb|EAZ27998.1| hypothetical protein OsJ_11964 [Oryza sativa Japonica Group]
          Length = 287

 Score = 67.4 bits (164), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 26/129 (20%), Positives = 49/129 (37%), Gaps = 8/129 (6%)

Query: 33  IGCSTTEIISEYE--TYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSC 90
            G    +++S+ E  +           + VY +  L   R I+  V         +I+  
Sbjct: 146 TGEEAEKLMSQNEKDSANEAEVLSAPPKLVYNNFVLRLAREILVAVASGWDKHVDIINKI 205

Query: 91  LTEKW---SFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFIN 147
             + W     +R+  +   IL   + E+      P +++I+E V +A  F  G  P+ IN
Sbjct: 206 TPQNWKDEPVARI--LELCILHIAMAEMT-SKGTPHKIVINEAVDLAKRFCDGGAPRVIN 262

Query: 148 AVLDKVSRK 156
             L    + 
Sbjct: 263 GCLRTFVKD 271


>gi|67924848|ref|ZP_00518244.1| Fmu, rRNA SAM-dependent methyltransferase [Crocosphaera watsonii WH
           8501]
 gi|67853307|gb|EAM48670.1| Fmu, rRNA SAM-dependent methyltransferase [Crocosphaera watsonii WH
           8501]
          Length = 452

 Score = 67.4 bits (164), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 26/139 (18%), Positives = 50/139 (35%), Gaps = 13/139 (9%)

Query: 17  GIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGV 76
             AR  A++ L +ID     T   ++               +S     D      +++G+
Sbjct: 8   SNARQLALKILLKIDRKNSYTDVALNRALN-----------QSNLSSSDRSLCTELVYGI 56

Query: 77  MDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHD 136
           +  ++ +D LI     +K         L  IL  G+ +L     +P    ++  V +A D
Sbjct: 57  IRHQRTLDSLIDQLGKKKAQQQ--PPNLRRILHIGLYQLRYLDHIPPSAAVNTSVDLAKD 114

Query: 137 FFYGDEPKFINAVLDKVSR 155
                    +N +L +  R
Sbjct: 115 NKLQRLSGVVNGILRQYIR 133


>gi|237738183|ref|ZP_04568664.1| 16S rRNA m(5)C 967 methyltransferase [Fusobacterium mortiferum ATCC
           9817]
 gi|229420063|gb|EEO35110.1| 16S rRNA m(5)C 967 methyltransferase [Fusobacterium mortiferum ATCC
           9817]
          Length = 433

 Score = 67.4 bits (164), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 29/130 (22%), Positives = 51/130 (39%), Gaps = 17/130 (13%)

Query: 43  EYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSC---LTEKWSFSR 99
           E   +   A  E   E+     +  +   + +GV+  K  +D  I      + + W    
Sbjct: 15  ENGKFSNIALNEYFKENNLSKKERGFITELFYGVIRNKIFLDYEIDKRTTTIKKDW---- 70

Query: 100 LDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRK--- 156
               + +ILR  + ++   +S   + +I E   +A   F     KFIN VL    R+   
Sbjct: 71  ----IRNILRISMYQISFMNS-DDKGVIWEATELAKKKFSVPVGKFINGVLRSYQREWQE 125

Query: 157 --EEIKRSGC 164
             +E+K SG 
Sbjct: 126 DVKELKESGK 135


>gi|270285005|ref|ZP_06194399.1| transcription antitermination protein NusB [Chlamydia muridarum
           Nigg]
 gi|270289028|ref|ZP_06195330.1| transcription antitermination protein NusB [Chlamydia muridarum
           Weiss]
 gi|301336403|ref|ZP_07224605.1| transcription antitermination protein NusB [Chlamydia muridarum
           MopnTet14]
          Length = 162

 Score = 67.4 bits (164), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 26/141 (18%), Positives = 57/141 (40%), Gaps = 15/141 (10%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           +   R   +QALY +++       ++S   T           E+     ++ +  +    
Sbjct: 21  KQKLRELVLQALYALEMAPKGEDSLVSLLMT-----------EASVSKKNVLYALMFCKA 69

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHS---VPVEVIISEYVC 132
           +   +  +D L+++ +    + + L +I  +ILR  + E  +      +P  V+I+E   
Sbjct: 70  IRANQSELDALLNATI-RTTTLANLTIIERNILRMMLFEHQQNQESSPIPTAVLIAETTR 128

Query: 133 IAHDFFYGDEPKFINAVLDKV 153
           +   F Y +    I AVL  +
Sbjct: 129 LIKKFSYVEGSSLILAVLGSI 149


>gi|315924509|ref|ZP_07920730.1| RNA methyltransferase Sun [Pseudoramibacter alactolyticus ATCC
           23263]
 gi|315622213|gb|EFV02173.1| RNA methyltransferase Sun [Pseudoramibacter alactolyticus ATCC
           23263]
          Length = 440

 Score = 67.4 bits (164), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 31/142 (21%), Positives = 56/142 (39%), Gaps = 17/142 (11%)

Query: 17  GIARLAAVQALYQIDIIGC-STTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
             AR  A ++L +ID  G  S  EI        F A+            D   + ++++G
Sbjct: 9   NNAREQAYKSLLKIDREGAFSNLEIRQTLSRLSFNAE------------DANLYTLLVYG 56

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
           V+  +  +D  +   + E     R+D     ILR    ++++   +P    +SE V +  
Sbjct: 57  VLQNQIFLDYCLDQLIKE---PKRVDFETREILRIAAYQILKLDRIPDYAAVSEAVLLCG 113

Query: 136 DFFYGDEPKFINAVLDKVSRKE 157
                    F+N VL  + R +
Sbjct: 114 K-VNRRAKGFVNGVLRNLIRNK 134


>gi|15834839|ref|NP_296598.1| transcription antitermination protein NusB [Chlamydia muridarum
           Nigg]
 gi|13878610|sp|Q9PL88|NUSB_CHLMU RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|7190258|gb|AAF39091.1| N utilization substance protein B, putative [Chlamydia muridarum
           Nigg]
          Length = 164

 Score = 67.4 bits (164), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 26/141 (18%), Positives = 57/141 (40%), Gaps = 15/141 (10%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           +   R   +QALY +++       ++S   T           E+     ++ +  +    
Sbjct: 23  KQKLRELVLQALYALEMAPKGEDSLVSLLMT-----------EASVSKKNVLYALMFCKA 71

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHS---VPVEVIISEYVC 132
           +   +  +D L+++ +    + + L +I  +ILR  + E  +      +P  V+I+E   
Sbjct: 72  IRANQSELDALLNATI-RTTTLANLTIIERNILRMMLFEHQQNQESSPIPTAVLIAETTR 130

Query: 133 IAHDFFYGDEPKFINAVLDKV 153
           +   F Y +    I AVL  +
Sbjct: 131 LIKKFSYVEGSSLILAVLGSI 151


>gi|205373322|ref|ZP_03226126.1| sun protein [Bacillus coahuilensis m4-4]
          Length = 267

 Score = 67.4 bits (164), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 24/140 (17%), Positives = 49/140 (35%), Gaps = 22/140 (15%)

Query: 20  RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79
           R AA++ L           E + + ++Y          +      D+     + +G + R
Sbjct: 6   REAALEVL-----------EQVEKNQSYSNLLLNHTIEKYEIKGPDVGLLTELTYGSIQR 54

Query: 80  KQHIDLLISSCL---TEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHD 136
           K  +D  +   +    E W        +  +L   + +++    VP    I E V IA  
Sbjct: 55  KMTLDYYLKPFIRKKVENW--------VRLLLHLSLYQMLYLDRVPERAAIHEAVEIAKK 106

Query: 137 FFYGDEPKFINAVLDKVSRK 156
             +      +N +L  + R+
Sbjct: 107 RGHKGIAGLVNGILRSIQRE 126


>gi|322392343|ref|ZP_08065804.1| RNA methyltransferase Sun [Streptococcus peroris ATCC 700780]
 gi|321144878|gb|EFX40278.1| RNA methyltransferase Sun [Streptococcus peroris ATCC 700780]
          Length = 437

 Score = 67.0 bits (163), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 31/139 (22%), Positives = 57/139 (41%), Gaps = 15/139 (10%)

Query: 18  IARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVM 77
            AR  A++ L           E +   + Y      +    S    VD      +++G +
Sbjct: 6   TARSLALEVL-----------EDVLVNQAYSNITLNKHLKGSQLSVVDKGLVTELVYGTV 54

Query: 78  DRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDF 137
            RK  ++  IS  + ++    +LD  L  +L   + +L     +P   +++E V IA   
Sbjct: 55  ARKLTLEWYISHFIEDR---DKLDSWLYVLLLMSLYQLQYLDKLPDHAVVNEAVEIAKSH 111

Query: 138 FYGDEPKFINAVLDKVSRK 156
             G   K +NAVL ++ R+
Sbjct: 112 KKG-SEKLVNAVLRRILRE 129


>gi|88856227|ref|ZP_01130887.1| putative RNA-binding Sun protein [marine actinobacterium PHSC20C1]
 gi|88814546|gb|EAR24408.1| putative RNA-binding Sun protein [marine actinobacterium PHSC20C1]
          Length = 454

 Score = 67.0 bits (163), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 24/137 (17%), Positives = 48/137 (35%), Gaps = 14/137 (10%)

Query: 19  ARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMD 78
           AR  A+  +             + E + Y           +     D      + +G + 
Sbjct: 7   ARRVALDVIM-----------AVRESDAYANLLLPVHLDRAKLSPADAGLATELTYGTLR 55

Query: 79  RKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFF 138
            + + D +I+         S++D  +  +LR    +L+    VP    + E V +A    
Sbjct: 56  MQGYYDAVIAQA--AGRPVSKIDPPVLDVLRLATHQLLSMR-VPSHAAVDESVRLAKTIG 112

Query: 139 YGDEPKFINAVLDKVSR 155
                 F+NAVL  +++
Sbjct: 113 TRSAVGFVNAVLRAITQ 129


>gi|321310948|ref|YP_004193277.1| transcription termination factor N-utilization substance protein B
           [Mycoplasma haemofelis str. Langford 1]
 gi|319802792|emb|CBY93438.1| transcription termination factor N-utilization substance protein B
           [Mycoplasma haemofelis str. Langford 1]
          Length = 136

 Score = 67.0 bits (163), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 33/141 (23%), Positives = 62/141 (43%), Gaps = 17/141 (12%)

Query: 20  RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79
           R++ VQ +Y          E+I++ +  +     + D  + + +        I    +D 
Sbjct: 12  RVSVVQVIYS---------ELIADQDFSKLDLSDQRDNWTDFEN-------KIFDNYLDN 55

Query: 80  KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139
           KQ    +I S L   WS  RL+ +  SIL   + E       P++V+I+E V  A ++  
Sbjct: 56  KQRYISVIESYLNADWSLERLNTLCASILLEAISEF-HVLKTPIKVLITESVKTAKNYCD 114

Query: 140 GDEPKFINAVLDKVSRKEEIK 160
            +E + +N VL+   + E + 
Sbjct: 115 ENEYRIVNRVLEDFLKNEAVN 135


>gi|226226029|ref|YP_002760135.1| putative rRNA methyltransferase [Gemmatimonas aurantiaca T-27]
 gi|226089220|dbj|BAH37665.1| putative rRNA methyltransferase [Gemmatimonas aurantiaca T-27]
          Length = 428

 Score = 67.0 bits (163), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 24/92 (26%), Positives = 44/92 (47%), Gaps = 2/92 (2%)

Query: 65  DLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVE 124
           D  W + ++ GV+  ++ +D ++++ +    S   LD  +  ILR G  +L+   SVP  
Sbjct: 22  DRRWVQELVWGVLRHRERLDAILATRIRGGLSV--LDDGVLDILRLGTYQLLSMDSVPPY 79

Query: 125 VIISEYVCIAHDFFYGDEPKFINAVLDKVSRK 156
             I + V            K +NAVL ++ R+
Sbjct: 80  AAIGQSVEAVKRKHGIGAGKLVNAVLRRIDRE 111


>gi|307708280|ref|ZP_07644747.1| ribosomal RNA small subunit methyltransferase B [Streptococcus
           mitis NCTC 12261]
 gi|307615726|gb|EFN94932.1| ribosomal RNA small subunit methyltransferase B [Streptococcus
           mitis NCTC 12261]
          Length = 437

 Score = 67.0 bits (163), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 29/139 (20%), Positives = 55/139 (39%), Gaps = 15/139 (10%)

Query: 18  IARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVM 77
            AR  A+  L           E +   + Y   A  +    S     D      +++G +
Sbjct: 6   TARSLALAVL-----------EDVFINQAYSNIALNKHFKGSQLSAADKGLVTELVYGTV 54

Query: 78  DRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDF 137
            RK  ++  +S  + ++    +LD  L  +L     +L     +P   +++E V +A   
Sbjct: 55  ARKLTLEWYLSHFIEDR---DQLDSWLYVLLLMSAYQLRYLDKIPDHAVVNEAVELAKVR 111

Query: 138 FYGDEPKFINAVLDKVSRK 156
             G   K +NAVL ++ R+
Sbjct: 112 KKG-SEKLVNAVLRRILRE 129


>gi|86609413|ref|YP_478175.1| ribosomal RNA small subunit methyltransferase B [Synechococcus sp.
           JA-2-3B'a(2-13)]
 gi|86557955|gb|ABD02912.1| ribosomal RNA small subunit methyltransferase B [Synechococcus sp.
           JA-2-3B'a(2-13)]
          Length = 457

 Score = 67.0 bits (163), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 30/138 (21%), Positives = 50/138 (36%), Gaps = 13/138 (9%)

Query: 19  ARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMD 78
           AR  A+ AL           + I     Y       L   S  +  D      +++G+  
Sbjct: 3   ARQLALLAL-----------QKIERQNAYADLVLGHLLANSSLIPADRHLVSELVYGITR 51

Query: 79  RKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFF 138
           R++ +D LI  CL ++    +    L  IL  G+ +L     +P    I   V +A    
Sbjct: 52  RRRTLDALID-CLAQR-PAHKQPPDLRLILHLGLYQLAFLDQIPASAAIHTSVELARQMG 109

Query: 139 YGDEPKFINAVLDKVSRK 156
            G     +N +L    R+
Sbjct: 110 LGSLTGVVNGILRAYQRQ 127


>gi|239932443|ref|ZP_04689396.1| putative Sun-family protein [Streptomyces ghanaensis ATCC 14672]
          Length = 274

 Score = 67.0 bits (163), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 25/138 (18%), Positives = 55/138 (39%), Gaps = 10/138 (7%)

Query: 20  RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79
           R+ A +AL  +D        ++                +  +   D      +++G + R
Sbjct: 24  RVLAFEALRAVDERDAYANLVLPPLLR-------TAREKGDFDARDAALATELVYGTLRR 76

Query: 80  KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139
           +   D +I++C+        +D  +  +L  G  +L+    +P    +S  V +A     
Sbjct: 77  QGTYDAIIAACVDR--PLREVDPPVLDVLSLGAHQLLGTR-IPTHAAVSASVELARVVLG 133

Query: 140 GDEPKFINAVLDKVSRKE 157
               KF+NAVL ++++ +
Sbjct: 134 DGRAKFVNAVLRRIAQDD 151


>gi|225181330|ref|ZP_03734774.1| sun protein [Dethiobacter alkaliphilus AHT 1]
 gi|225167911|gb|EEG76718.1| sun protein [Dethiobacter alkaliphilus AHT 1]
          Length = 451

 Score = 67.0 bits (163), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 33/148 (22%), Positives = 54/148 (36%), Gaps = 14/148 (9%)

Query: 12  LSHRRGI-ARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFR 70
           ++ +R I AR A++ AL           + +   + Y   A  E+         D     
Sbjct: 1   MTRKRKIDAREASLLAL-----------QRVEADDAYVNLALDEVLSSHSLDPRDKRLAA 49

Query: 71  VIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEY 130
            I +GV+  K  +D LI           +LD  +  ILR G  +L     VP    +   
Sbjct: 50  EITYGVITYKLTLDWLIEK--VSGRPIKKLDKPIHQILRIGFYQLFYLDRVPPAAAVHAT 107

Query: 131 VCIAHDFFYGDEPKFINAVLDKVSRKEE 158
           V +           F+N V+    RK++
Sbjct: 108 VELVKKGKKRGLAPFVNGVMRGALRKKD 135


>gi|284928897|ref|YP_003421419.1| ribosomal RNA small subunit methyltransferase RsmB [cyanobacterium
           UCYN-A]
 gi|284809356|gb|ADB95061.1| ribosomal RNA small subunit methyltransferase RsmB [cyanobacterium
           UCYN-A]
          Length = 453

 Score = 67.0 bits (163), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 32/154 (20%), Positives = 63/154 (40%), Gaps = 20/154 (12%)

Query: 10  LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF 69
           +K+S+    AR   ++ L +ID         +     +   +             D    
Sbjct: 1   MKVSN----ARQLVLKILREIDKNNSFINISLDSAFKHNELS-----------RQDRGLC 45

Query: 70  RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISE 129
             +++G++  ++ +D LI   L  K S  +   +L  IL  G+ +L+    VP+   ++ 
Sbjct: 46  TELVYGIIRCQRTLDSLIDQ-LGNKKSQKQ-SPVLRRILHIGLYQLLYLDHVPLSAAVNT 103

Query: 130 YVCIAHDFFYGDEPKFINAVLD---KVSRKEEIK 160
            V +A +       K +NA+L    +V +KE  K
Sbjct: 104 SVDLAKNNNLNVLSKVVNAILREYIRVKKKENCK 137


>gi|303258671|ref|ZP_07344651.1| rRNA methyltransferase RsmB [Streptococcus pneumoniae SP-BS293]
 gi|303266637|ref|ZP_07352521.1| rRNA methyltransferase RsmB [Streptococcus pneumoniae BS457]
 gi|303268527|ref|ZP_07354320.1| rRNA methyltransferase RsmB [Streptococcus pneumoniae BS458]
 gi|302640172|gb|EFL70627.1| rRNA methyltransferase RsmB [Streptococcus pneumoniae SP-BS293]
 gi|302641922|gb|EFL72276.1| rRNA methyltransferase RsmB [Streptococcus pneumoniae BS458]
 gi|302643799|gb|EFL74062.1| rRNA methyltransferase RsmB [Streptococcus pneumoniae BS457]
          Length = 437

 Score = 66.7 bits (162), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 33/157 (21%), Positives = 60/157 (38%), Gaps = 20/157 (12%)

Query: 18  IARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVM 77
            AR  A+  L           E +   + Y   A  +    S     D      +++G +
Sbjct: 6   TARSLALAVL-----------EDVFVNQAYSNIALNKHLKGSQLSAADKGLVTELVYGTV 54

Query: 78  DRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDF 137
            RK  ++  +S  + ++    +LD  L  +L   V +L     +P   +++E V +A   
Sbjct: 55  ARKLTLEWYLSHFIEDR---DQLDSWLYVLLLMSVYQLRYLDKIPDHAVVNEAVELAK-L 110

Query: 138 FYGDEPKFINAVLDKVSRK-----EEIKRSGCVSAIT 169
                 K +NAVL ++ R+       IKR     +I 
Sbjct: 111 RKKGSEKLVNAVLRRILREGWPDIANIKRKNKRDSIA 147


>gi|303261834|ref|ZP_07347780.1| rRNA methyltransferase RsmB [Streptococcus pneumoniae SP14-BS292]
 gi|303263697|ref|ZP_07349619.1| rRNA methyltransferase RsmB [Streptococcus pneumoniae BS397]
 gi|302636917|gb|EFL67406.1| rRNA methyltransferase RsmB [Streptococcus pneumoniae SP14-BS292]
 gi|302646735|gb|EFL76960.1| rRNA methyltransferase RsmB [Streptococcus pneumoniae BS397]
          Length = 438

 Score = 66.7 bits (162), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 33/157 (21%), Positives = 60/157 (38%), Gaps = 20/157 (12%)

Query: 18  IARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVM 77
            AR  A+  L           E +   + Y   A  +    S     D      +++G +
Sbjct: 7   TARSLALAVL-----------EDVFVNQAYSNIALNKHLKGSQLSAADKGLVTELVYGTV 55

Query: 78  DRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDF 137
            RK  ++  +S  + ++    +LD  L  +L   V +L     +P   +++E V +A   
Sbjct: 56  ARKLTLEWYLSHFIEDR---DQLDSWLYVLLLMSVYQLRYLDKIPDHAVVNEAVELAK-L 111

Query: 138 FYGDEPKFINAVLDKVSRK-----EEIKRSGCVSAIT 169
                 K +NAVL ++ R+       IKR     +I 
Sbjct: 112 RKKGSEKLVNAVLRRILREGWPDIANIKRKNKRDSIA 148


>gi|255636077|gb|ACU18383.1| unknown [Glycine max]
          Length = 289

 Score = 66.7 bits (162), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 35/193 (18%), Positives = 61/193 (31%), Gaps = 48/193 (24%)

Query: 17  GIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVES----------------- 59
             AR  A+  +Y   + G     +  +    R  A  + + E                  
Sbjct: 94  RAARELALSIIYAACLEGMDPVRLFEKRMNARREAGYKFNEERLLEYNHMSFGGPPVTVG 153

Query: 60  -----------------------------VYLHVDLEWFRVIIHGVMDRKQHIDLLISSC 90
                                        VY  + L + + ++  V D      L+I+  
Sbjct: 154 SDEEANELLRHIEEESAIEAEVLTAPPKLVYNKLILRFTKKLLVAVRDTWDSHVLVINKI 213

Query: 91  LTEKWSFSRLDMI-LCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAV 149
             + W       I   SIL   + E+ E      +++I+E V +A  F  G  P+ IN  
Sbjct: 214 APQNWKNEPAAKILELSILHLAMSEM-EVLETRHQIVINEAVDLAKRFCDGAAPRIINGC 272

Query: 150 LDKVSRKEEIKRS 162
           L    R+ E++ S
Sbjct: 273 LRTFFRELELEAS 285


>gi|296129702|ref|YP_003636952.1| Fmu (Sun) domain protein [Cellulomonas flavigena DSM 20109]
 gi|296021517|gb|ADG74753.1| Fmu (Sun) domain protein [Cellulomonas flavigena DSM 20109]
          Length = 509

 Score = 66.7 bits (162), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 26/121 (21%), Positives = 50/121 (41%), Gaps = 3/121 (2%)

Query: 36  STTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKW 95
            T   ++E E Y       L  E      D  +   + +G +  +   D +++   +   
Sbjct: 55  DTLRAVAESEAYANLVLPPLLRERGLAGRDAAFATELAYGTLRLRGRYDAVLAQASSR-- 112

Query: 96  SFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSR 155
               +D  +  +LR G  +L+    VP    +SE V +A +       +F+NAVL +V+ 
Sbjct: 113 PLDEVDPPVLDVLRLGAHQLLGMR-VPAHAAVSETVGLARERVGAGAAQFVNAVLRRVAE 171

Query: 156 K 156
           +
Sbjct: 172 R 172


>gi|150021390|ref|YP_001306744.1| NusB/RsmB/TIM44 [Thermosipho melanesiensis BI429]
 gi|149793911|gb|ABR31359.1| NusB/RsmB/TIM44 [Thermosipho melanesiensis BI429]
          Length = 416

 Score = 66.7 bits (162), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 22/93 (23%), Positives = 49/93 (52%), Gaps = 12/93 (12%)

Query: 65  DLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVE 124
           +  +F+ +I GV+ +++++D +I+S L +K     +   + +ILR G  +L+  +     
Sbjct: 34  EKAFFKNLIFGVLRKQEYLDWVINSLLKKK----DIPPSIRTILRIGTYQLLFTNKPSYS 89

Query: 125 VIISEYVCIA--HDFFYGDEPKFINAVLDKVSR 155
           ++ +E V +     F        +NA+L K+S+
Sbjct: 90  IV-NETVELVEKKSF-----KGLVNAILRKISK 116


>gi|303254346|ref|ZP_07340454.1| rRNA methyltransferase RsmB [Streptococcus pneumoniae BS455]
 gi|301802435|emb|CBW35190.1| putative ribosomal RNA small subunit methyltransferase
           [Streptococcus pneumoniae INV200]
 gi|302598697|gb|EFL65735.1| rRNA methyltransferase RsmB [Streptococcus pneumoniae BS455]
          Length = 437

 Score = 66.7 bits (162), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 33/157 (21%), Positives = 60/157 (38%), Gaps = 20/157 (12%)

Query: 18  IARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVM 77
            AR  A+  L           E +   + Y   A  +    S     D      +++G +
Sbjct: 6   TARSLALAVL-----------EDVFVNQAYSNIALNKHLKGSQLSAADKGLVTELVYGTV 54

Query: 78  DRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDF 137
            RK  ++  +S  + ++    +LD  L  +L   V +L     +P   +++E V +A   
Sbjct: 55  ARKLTLEWYLSHFIEDR---DQLDSWLYVLLLMSVYQLRYLDKIPDHAVVNEAVELAK-L 110

Query: 138 FYGDEPKFINAVLDKVSRK-----EEIKRSGCVSAIT 169
                 K +NAVL ++ R+       IKR     +I 
Sbjct: 111 RKKGSEKLVNAVLRRILREGWPDIANIKRKNKRDSIA 147


>gi|182684677|ref|YP_001836424.1| rRNA methyltransferase RsmB [Streptococcus pneumoniae CGSP14]
 gi|182630011|gb|ACB90959.1| rRNA methyltransferase RsmB [Streptococcus pneumoniae CGSP14]
          Length = 438

 Score = 66.7 bits (162), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 33/157 (21%), Positives = 60/157 (38%), Gaps = 20/157 (12%)

Query: 18  IARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVM 77
            AR  A+  L           E +   + Y   A  +    S     D      +++G +
Sbjct: 7   TARSLALAVL-----------EDVFVNQAYSNIALNKHLKGSQLSAADKGLVTELVYGTV 55

Query: 78  DRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDF 137
            RK  ++  +S  + ++    +LD  L  +L   V +L     +P   +++E V +A   
Sbjct: 56  ARKLTLEWYLSHFIEDR---DQLDSWLYVLLLMSVYQLRYLDKIPDHAVVNEAVELAK-L 111

Query: 138 FYGDEPKFINAVLDKVSRK-----EEIKRSGCVSAIT 169
                 K +NAVL ++ R+       IKR     +I 
Sbjct: 112 RKKGSEKLVNAVLRRILREGWPDIANIKRKNKRDSIA 148


>gi|225857347|ref|YP_002738858.1| ribosomal RNA small subunit methyltransferase B [Streptococcus
           pneumoniae P1031]
 gi|225726221|gb|ACO22073.1| ribosomal RNA small subunit methyltransferase B [Streptococcus
           pneumoniae P1031]
          Length = 437

 Score = 66.7 bits (162), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 33/157 (21%), Positives = 60/157 (38%), Gaps = 20/157 (12%)

Query: 18  IARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVM 77
            AR  A+  L           E +   + Y   A  +    S     D      +++G +
Sbjct: 6   TARSLALAVL-----------EDVFVNQAYSNIALNKHLKGSQLSAADKGLVTELVYGTV 54

Query: 78  DRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDF 137
            RK  ++  +S  + ++    +LD  L  +L   V +L     +P   +++E V +A   
Sbjct: 55  ARKLTLEWYLSHFIEDR---DQLDSWLYVLLLMSVYQLRYLDKIPDHAVVNEAVELAK-L 110

Query: 138 FYGDEPKFINAVLDKVSRK-----EEIKRSGCVSAIT 169
                 K +NAVL ++ R+       IKR     +I 
Sbjct: 111 RKKGSEKLVNAVLRRILREGWPDIANIKRKNKRDSIA 147


>gi|209524134|ref|ZP_03272685.1| sun protein [Arthrospira maxima CS-328]
 gi|209495509|gb|EDZ95813.1| sun protein [Arthrospira maxima CS-328]
          Length = 458

 Score = 66.7 bits (162), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 27/143 (18%), Positives = 48/143 (33%), Gaps = 13/143 (9%)

Query: 20  RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79
           R  A   L  I   G     ++ E        D            D      +++G   R
Sbjct: 6   RQLAFVTLRDIQRRGAFADLVLDEKLRQADLKD-----------ADRRLGTELVYGCTRR 54

Query: 80  KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139
           ++ +D +I   L +K    +    L  IL  G+ +L    ++P    ++  V +      
Sbjct: 55  RRTLDAIIDR-LAKK-PAHQQPPDLRIILHLGLYQLSFSTNIPPSAAVNTTVDLTKVNHL 112

Query: 140 GDEPKFINAVLDKVSRKEEIKRS 162
                F+N +L +  R  E   S
Sbjct: 113 SGLGGFVNGLLRQYLRLLEAGNS 135


>gi|149011398|ref|ZP_01832645.1| rRNA methyltransferase RsmB [Streptococcus pneumoniae SP19-BS75]
 gi|147764388|gb|EDK71319.1| rRNA methyltransferase RsmB [Streptococcus pneumoniae SP19-BS75]
          Length = 438

 Score = 66.7 bits (162), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 29/139 (20%), Positives = 55/139 (39%), Gaps = 15/139 (10%)

Query: 18  IARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVM 77
            AR  A+  L           E +   + Y   A  +    S  L  D      +++G +
Sbjct: 7   TARSLALAVL-----------EDVFVNQAYSNIALNKHLKGSQLLAADKGLVTELVYGTV 55

Query: 78  DRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDF 137
            RK  ++  +S  + ++    +LD  L  +L     +L     +P   +++E V +A   
Sbjct: 56  ARKLTLEWYLSHFIEDR---DQLDSWLYVLLLMSAYQLRYLDKIPDHAVVNEAVELAK-L 111

Query: 138 FYGDEPKFINAVLDKVSRK 156
                 K +NAVL ++ R+
Sbjct: 112 RKKGSEKLVNAVLRRILRE 130


>gi|222099955|ref|YP_002534523.1| Sun protein [Thermotoga neapolitana DSM 4359]
 gi|221572345|gb|ACM23157.1| Sun protein [Thermotoga neapolitana DSM 4359]
          Length = 431

 Score = 66.7 bits (162), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 30/115 (26%), Positives = 54/115 (46%), Gaps = 8/115 (6%)

Query: 40  IISEYETYRFCADTELD-VESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFS 98
           ++ +YE  +F    ++D V SV    D  + + ++ GVM +++ +D  I+  L       
Sbjct: 12  LLRKYEKEKFLDREDVDSVLSVLNDRDRRFLKELVWGVMRKEELLDWYINQLLRNP---- 67

Query: 99  RLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKV 153
            +   +   LR GV +L+    VP    +SE V +       +  K +NAVL +V
Sbjct: 68  DIPPAVRVALRMGVYQLLFMDGVPDYAAVSETVKLVK---NENFKKLVNAVLRRV 119


>gi|193216567|ref|YP_001999809.1| transcription termination factor [Mycoplasma arthritidis 158L3-1]
 gi|193001890|gb|ACF07105.1| transcription termination factor [Mycoplasma arthritidis 158L3-1]
          Length = 148

 Score = 66.7 bits (162), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 30/149 (20%), Positives = 57/149 (38%), Gaps = 20/149 (13%)

Query: 29  QIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLL-- 86
           Q D     +  ++ +Y             E     +D+ +   +       K+ +D L  
Sbjct: 6   QKDQTQKKSVFLLKKYNERVKLITFIYQSELFEEKIDVNY---LFEHFDLSKRELDSLTI 62

Query: 87  ISSCLT-----------EKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
           IS               E+W++ R+  +  +I+  G+ EL        +V+I+E V IA 
Sbjct: 63  ISEKYDLFQSIAKRSILEQWTWQRIQPLARAIIIYGIFELFFNS---PKVVINEMVNIAK 119

Query: 136 DFFYGDE-PKFINAVLDKVSRKEEIKRSG 163
            F   D   KF+N  LD +++  +  +  
Sbjct: 120 SFIPDDSTYKFVNRTLDMIAKSPQFAKEA 148


>gi|300214410|gb|ADJ78826.1| 16S ribosomal RNA m(5)C 967 methyltransferase [Lactobacillus
           salivarius CECT 5713]
          Length = 445

 Score = 66.3 bits (161), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 27/142 (19%), Positives = 60/142 (42%), Gaps = 14/142 (9%)

Query: 15  RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74
           +    RL AV+ L          T + S+  TY   A  ++  E+ +   D +    I++
Sbjct: 2   KNKTVRLLAVELL----------TRVESQ-GTYSNLALNKVIEENNFSVKDTKLLTTIVY 50

Query: 75  GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134
           GV+  K  ++  +   + +    ++L + +  +L   + +++    +P   + +E + IA
Sbjct: 51  GVIQHKLTLEYWLEPFIKKA---NKLQLWVKELLLVSLYQMVYLDKIPDRAVFNESIEIA 107

Query: 135 HDFFYGDEPKFINAVLDKVSRK 156
               +    KF+  VL  + R 
Sbjct: 108 KIKGHTGIRKFVTGVLHSIRRN 129


>gi|225021364|ref|ZP_03710556.1| hypothetical protein CORMATOL_01383 [Corynebacterium matruchotii
           ATCC 33806]
 gi|305681148|ref|ZP_07403955.1| putative ribosomal RNA small subunit methyltransferase B
           [Corynebacterium matruchotii ATCC 14266]
 gi|224945746|gb|EEG26955.1| hypothetical protein CORMATOL_01383 [Corynebacterium matruchotii
           ATCC 33806]
 gi|305659353|gb|EFM48853.1| putative ribosomal RNA small subunit methyltransferase B
           [Corynebacterium matruchotii ATCC 14266]
          Length = 491

 Score = 66.3 bits (161), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 27/138 (19%), Positives = 51/138 (36%), Gaps = 14/138 (10%)

Query: 18  IARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVM 77
           +AR  A   LY++++ G      + +  T           E      D  +   I +G +
Sbjct: 49  LARAVAFDVLYRVNVEGTYANLALPKALT-----------EYRLKRRDAAFATEITYGTL 97

Query: 78  DRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDF 137
             +  +D++I+ C +       +D  +   +R G  +L+     P    +   V I    
Sbjct: 98  RVQGILDIVIAHCSSR--PLDSIDPAVLGAIRLGAYQLLYTRVEPHA-AVDSAVKIVAAT 154

Query: 138 FYGDEPKFINAVLDKVSR 155
                  F N +L K+SR
Sbjct: 155 GNEQAKGFANGILRKISR 172


>gi|183603536|ref|ZP_02717787.2| ribosomal RNA small subunit methyltransferase B [Streptococcus
           pneumoniae CDC3059-06]
 gi|183576422|gb|EDT96950.1| ribosomal RNA small subunit methyltransferase B [Streptococcus
           pneumoniae CDC3059-06]
          Length = 437

 Score = 66.3 bits (161), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 29/139 (20%), Positives = 55/139 (39%), Gaps = 15/139 (10%)

Query: 18  IARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVM 77
            AR  A+  L           E +   + Y   A  +    S  L  D      +++G +
Sbjct: 6   TARSLALAVL-----------EDVFVNQAYSNIALNKHLKGSQLLAADKGLVTELVYGTV 54

Query: 78  DRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDF 137
            RK  ++  +S  + ++    +LD  L  +L     +L     +P   +++E V +A   
Sbjct: 55  ARKLTLEWYLSHFIEDR---DQLDSWLYVLLLMSAYQLRYLDKIPDHAVVNEAVELAK-L 110

Query: 138 FYGDEPKFINAVLDKVSRK 156
                 K +NAVL ++ R+
Sbjct: 111 RKKGSEKLVNAVLRRILRE 129


>gi|15901566|ref|NP_346170.1| rRNA methyltransferase RsmB [Streptococcus pneumoniae TIGR4]
 gi|237649147|ref|ZP_04523399.1| rRNA methyltransferase RsmB [Streptococcus pneumoniae CCRI 1974]
 gi|237820737|ref|ZP_04596582.1| rRNA methyltransferase RsmB [Streptococcus pneumoniae CCRI 1974M2]
 gi|14973229|gb|AAK75810.1| rRNA methyltransferase RsmB [Streptococcus pneumoniae TIGR4]
 gi|332074074|gb|EGI84552.1| ribosomal RNA small subunit methyltransferase B [Streptococcus
           pneumoniae GA41301]
 gi|332201157|gb|EGJ15228.1| ribosomal RNA small subunit methyltransferase B [Streptococcus
           pneumoniae GA47901]
          Length = 437

 Score = 66.3 bits (161), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 29/139 (20%), Positives = 55/139 (39%), Gaps = 15/139 (10%)

Query: 18  IARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVM 77
            AR  A+  L           E +   + Y   A  +    S  L  D      +++G +
Sbjct: 6   TARSLALAVL-----------EDVFVNQAYSNIALNKHLKGSQLLAADKGLVTELVYGTV 54

Query: 78  DRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDF 137
            RK  ++  +S  + ++    +LD  L  +L     +L     +P   +++E V +A   
Sbjct: 55  ARKLTLEWYLSHFIEDR---DQLDSWLYVLLLMSAYQLRYLDKIPDHAVVNEAVELAK-L 110

Query: 138 FYGDEPKFINAVLDKVSRK 156
                 K +NAVL ++ R+
Sbjct: 111 RKKGSEKLVNAVLRRILRE 129


>gi|111657689|ref|ZP_01408417.1| hypothetical protein SpneT_02001123 [Streptococcus pneumoniae
           TIGR4]
 gi|149002037|ref|ZP_01826991.1| hypothetical protein CGSSp14BS69_10011 [Streptococcus pneumoniae
           SP14-BS69]
 gi|147759846|gb|EDK66836.1| hypothetical protein CGSSp14BS69_10011 [Streptococcus pneumoniae
           SP14-BS69]
          Length = 438

 Score = 66.3 bits (161), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 29/139 (20%), Positives = 55/139 (39%), Gaps = 15/139 (10%)

Query: 18  IARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVM 77
            AR  A+  L           E +   + Y   A  +    S  L  D      +++G +
Sbjct: 7   TARSLALAVL-----------EDVFVNQAYSNIALNKHLKGSQLLAADKGLVTELVYGTV 55

Query: 78  DRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDF 137
            RK  ++  +S  + ++    +LD  L  +L     +L     +P   +++E V +A   
Sbjct: 56  ARKLTLEWYLSHFIEDR---DQLDSWLYVLLLMSAYQLRYLDKIPDHAVVNEAVELAK-L 111

Query: 138 FYGDEPKFINAVLDKVSRK 156
                 K +NAVL ++ R+
Sbjct: 112 RKKGSEKLVNAVLRRILRE 130


>gi|148997789|ref|ZP_01825353.1| hypothetical protein CGSSp11BS70_02739 [Streptococcus pneumoniae
           SP11-BS70]
 gi|147756288|gb|EDK63330.1| hypothetical protein CGSSp11BS70_02739 [Streptococcus pneumoniae
           SP11-BS70]
          Length = 438

 Score = 66.3 bits (161), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 28/139 (20%), Positives = 54/139 (38%), Gaps = 15/139 (10%)

Query: 18  IARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVM 77
            AR  A+  L           E +   + Y   A  +    S     D      +++G +
Sbjct: 7   TARSLALAVL-----------EDVFVNQAYSNIALNKHLKGSQLSAADKGLVTELVYGTV 55

Query: 78  DRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDF 137
            RK  ++  +S  + ++    +LD  L  +L     +L     +P   +++E V +A   
Sbjct: 56  ARKLTLEWYLSHFIEDR---DQLDSWLYVLLLMSAYQLRYLDKIPDHAVVNEAVELAK-L 111

Query: 138 FYGDEPKFINAVLDKVSRK 156
                 K +NAVL ++ R+
Sbjct: 112 RKKGSEKLVNAVLRRILRE 130


>gi|168575074|ref|ZP_02721037.1| ribosomal RNA small subunit methyltransferase B [Streptococcus
           pneumoniae MLV-016]
 gi|307068359|ref|YP_003877325.1| tRNA and rRNA cytosine-C5-methylase [Streptococcus pneumoniae
           AP200]
 gi|183578893|gb|EDT99421.1| ribosomal RNA small subunit methyltransferase B [Streptococcus
           pneumoniae MLV-016]
 gi|306409896|gb|ADM85323.1| tRNA and rRNA cytosine-C5-methylase [Streptococcus pneumoniae
           AP200]
          Length = 437

 Score = 66.3 bits (161), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 28/139 (20%), Positives = 54/139 (38%), Gaps = 15/139 (10%)

Query: 18  IARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVM 77
            AR  A+  L           E +   + Y   A  +    S     D      +++G +
Sbjct: 6   TARSLALAVL-----------EDVFVNQAYSNIALNKHLKGSQLSAADKGLVTELVYGTV 54

Query: 78  DRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDF 137
            RK  ++  +S  + ++    +LD  L  +L     +L     +P   +++E V +A   
Sbjct: 55  ARKLTLEWYLSHFIEDR---DQLDSWLYVLLLMSAYQLRYLDKIPDHAVVNEAVELAK-L 110

Query: 138 FYGDEPKFINAVLDKVSRK 156
                 K +NAVL ++ R+
Sbjct: 111 RKKGSEKLVNAVLRRILRE 129


>gi|29840529|ref|NP_829635.1| transcription antitermination protein NusB [Chlamydophila caviae
           GPIC]
 gi|29834878|gb|AAP05513.1| N utilization substance protein B, putative [Chlamydophila caviae
           GPIC]
          Length = 165

 Score = 66.3 bits (161), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 26/140 (18%), Positives = 57/140 (40%), Gaps = 12/140 (8%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           +   R   +Q LY + +       ++    +       E  V   +    L + + I+  
Sbjct: 22  KQKMREIVLQMLYALGMDPSCEESLVPLLMS-------ETAVTQRHAFTALSFSKEIL-- 72

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
              +   +DLLI+    +  S  +L ++  ++LR  + E      +   ++I+E   +  
Sbjct: 73  --AKSSELDLLIAQT-VKNTSLEKLTLMEKNVLRLTLFEHFHGQPINTAILIAEATRLVK 129

Query: 136 DFFYGDEPKFINAVLDKVSR 155
            F Y +   F++AVL+ + R
Sbjct: 130 KFSYIEACTFVHAVLNDIFR 149


>gi|168491383|ref|ZP_02715526.1| ribosomal RNA small subunit methyltransferase B [Streptococcus
           pneumoniae CDC0288-04]
 gi|183574228|gb|EDT94756.1| ribosomal RNA small subunit methyltransferase B [Streptococcus
           pneumoniae CDC0288-04]
          Length = 437

 Score = 66.3 bits (161), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 28/139 (20%), Positives = 54/139 (38%), Gaps = 15/139 (10%)

Query: 18  IARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVM 77
            AR  A+  L           E +   + Y   A  +    S     D      +++G +
Sbjct: 6   TARSLALAVL-----------EDVFVNQAYSNIALNKHLKGSQLSAADKGLVTELVYGTV 54

Query: 78  DRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDF 137
            RK  ++  +S  + ++    +LD  L  +L     +L     +P   +++E V +A   
Sbjct: 55  ARKLTLEWYLSHFIEDR---DQLDNWLYVLLLMSAYQLRYLDKIPDHAVVNEAVELAK-L 110

Query: 138 FYGDEPKFINAVLDKVSRK 156
                 K +NAVL ++ R+
Sbjct: 111 RKKGSEKLVNAVLRRILRE 129


>gi|116517030|ref|YP_816997.1| ribosomal RNA small subunit methyltransferase B [Streptococcus
           pneumoniae D39]
 gi|148984178|ref|ZP_01817473.1| hypothetical protein CGSSp3BS71_03117 [Streptococcus pneumoniae
           SP3-BS71]
 gi|116077606|gb|ABJ55326.1| ribosomal RNA small subunit methyltransferase B [Streptococcus
           pneumoniae D39]
 gi|147923467|gb|EDK74580.1| hypothetical protein CGSSp3BS71_03117 [Streptococcus pneumoniae
           SP3-BS71]
 gi|301800539|emb|CBW33179.1| putative ribosomal RNA small subunit methyltransferase
           [Streptococcus pneumoniae OXC141]
          Length = 437

 Score = 66.3 bits (161), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 28/140 (20%), Positives = 55/140 (39%), Gaps = 15/140 (10%)

Query: 18  IARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVM 77
            AR  A+  L           E +   + Y   A  +    S     D      +++G +
Sbjct: 6   TARSLALAVL-----------EDVFVNQAYSNIALNKHLKGSQLSAADKGLVTELVYGTV 54

Query: 78  DRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDF 137
            RK  ++  +S  + ++    +LD  L  +L     +L     +P   +++E V +A   
Sbjct: 55  ARKLTLEWYLSHFIEDR---DQLDSWLYVLLLMSAYQLRYLDKIPDHAVVNEAVELAK-L 110

Query: 138 FYGDEPKFINAVLDKVSRKE 157
                 K +NAVL ++ R++
Sbjct: 111 RKKGSEKLVNAVLRRILRED 130


>gi|15903621|ref|NP_359171.1| rRNA methylase [Streptococcus pneumoniae R6]
 gi|15459245|gb|AAL00382.1| rRNA methylase [Streptococcus pneumoniae R6]
          Length = 438

 Score = 66.3 bits (161), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 28/140 (20%), Positives = 55/140 (39%), Gaps = 15/140 (10%)

Query: 18  IARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVM 77
            AR  A+  L           E +   + Y   A  +    S     D      +++G +
Sbjct: 7   TARSLALAVL-----------EDVFVNQAYSNIALNKHLKGSQLSAADKGLVTELVYGTV 55

Query: 78  DRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDF 137
            RK  ++  +S  + ++    +LD  L  +L     +L     +P   +++E V +A   
Sbjct: 56  ARKLTLEWYLSHFIEDR---DQLDSWLYVLLLMSAYQLRYLDKIPDHAVVNEAVELAK-L 111

Query: 138 FYGDEPKFINAVLDKVSRKE 157
                 K +NAVL ++ R++
Sbjct: 112 RKKGSEKLVNAVLRRILRED 131


>gi|302380559|ref|ZP_07269024.1| putative ribosomal RNA small subunit methyltransferase B
           [Finegoldia magna ACS-171-V-Col3]
 gi|302311502|gb|EFK93518.1| putative ribosomal RNA small subunit methyltransferase B
           [Finegoldia magna ACS-171-V-Col3]
          Length = 423

 Score = 66.3 bits (161), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 24/97 (24%), Positives = 42/97 (43%), Gaps = 5/97 (5%)

Query: 59  SVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIEC 118
                 D+ + +  +   ++ +  ID +IS C       +RLD I+  ILR    E++  
Sbjct: 31  GDLDKRDIAYIKKCVFTEIENRFFIDYVISKC--SDLEINRLDKIVLEILRMATTEILFM 88

Query: 119 HSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSR 155
            +    V+  E V +A          ++NAVL +V R
Sbjct: 89  KTADYAVV-DEAVELAS--SITRYKDYVNAVLREVCR 122


>gi|330832248|ref|YP_004401073.1| tRNA and rRNA cytosine-C5-methylase [Streptococcus suis ST3]
 gi|329306471|gb|AEB80887.1| tRNA and rRNA cytosine-C5-methylase [Streptococcus suis ST3]
          Length = 436

 Score = 66.3 bits (161), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 32/158 (20%), Positives = 65/158 (41%), Gaps = 21/158 (13%)

Query: 12  LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71
           + ++   AR  A+  L           E + +   Y   A  +    S     D      
Sbjct: 1   MINKHETARSLALSVL-----------EQVFDQGAYSNIALNKALESSRLSAQDKGLATE 49

Query: 72  IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
           +++G + RK  ++  ++  + ++    +LD  +  +L   + +L+    +P   +++E V
Sbjct: 50  LVYGTVSRKITLEWYLAHFIEDR---EKLDTWVYYLLMLSLYQLVYLDKLPTHAVVNEAV 106

Query: 132 CIAHDFFYGDEPKFINAVLDKVS-----RKEEIKRSGC 164
            IA      D  KF+NA+L K+S     +  +IKR   
Sbjct: 107 NIAKRKPGTD--KFVNAILRKLSQDSLPKPADIKRKNK 142


>gi|90961592|ref|YP_535508.1| 16S rRNA m(5)C 967 methyltransferase [Lactobacillus salivarius
           UCC118]
 gi|301299300|ref|ZP_07205586.1| ribosomal RNA small subunit methyltransferase B [Lactobacillus
           salivarius ACS-116-V-Col5a]
 gi|90820786|gb|ABD99425.1| 16S rRNA m(5)C 967 methyltransferase [Lactobacillus salivarius
           UCC118]
 gi|300853144|gb|EFK80742.1| ribosomal RNA small subunit methyltransferase B [Lactobacillus
           salivarius ACS-116-V-Col5a]
          Length = 445

 Score = 66.3 bits (161), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 27/142 (19%), Positives = 60/142 (42%), Gaps = 14/142 (9%)

Query: 15  RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74
           +    RL AV+ L          T + S+  TY   A  ++  E+ +   D +    I++
Sbjct: 2   KNKTVRLLAVELL----------TRVESQ-GTYSNLALNKVIEENNFSVKDTKLLTTIVY 50

Query: 75  GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134
           GV+  K  ++  +   + +    ++L + +  +L   + +++    +P   + +E + IA
Sbjct: 51  GVIQHKLTLEYWLEPFIKKA---NKLQLWVKELLLVSLYQMVYLDKIPDRAVFNESIEIA 107

Query: 135 HDFFYGDEPKFINAVLDKVSRK 156
               +    KF+  VL  + R 
Sbjct: 108 KIKGHTGIRKFVTGVLHSIRRN 129


>gi|327441110|dbj|BAK17475.1| tRNA and rRNA cytosine-C5-methylase [Solibacillus silvestris
           StLB046]
          Length = 453

 Score = 66.3 bits (161), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 16/92 (17%), Positives = 37/92 (40%), Gaps = 5/92 (5%)

Query: 65  DLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVE 124
           D      + +G +  K  +D  +   +  K     +D+ +  +LR  + ++     +P  
Sbjct: 48  DRGLLTELTYGTLQHKLTLDYYLEPFIRGK-----VDIWVRWLLRMSLYQMQYLTRIPAH 102

Query: 125 VIISEYVCIAHDFFYGDEPKFINAVLDKVSRK 156
             ++E V IA    +      +N +L  + R+
Sbjct: 103 AAVNEAVEIAKRRGHKGIASMVNGILRSILRE 134


>gi|303233972|ref|ZP_07320621.1| putative ribosomal RNA small subunit methyltransferase B
           [Finegoldia magna BVS033A4]
 gi|302494897|gb|EFL54654.1| putative ribosomal RNA small subunit methyltransferase B
           [Finegoldia magna BVS033A4]
          Length = 423

 Score = 66.3 bits (161), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 24/97 (24%), Positives = 42/97 (43%), Gaps = 5/97 (5%)

Query: 59  SVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIEC 118
                 D+ + +  +   ++ +  ID +IS C       +RLD I+  ILR    E++  
Sbjct: 31  GDLDKRDIAYIKKCVFTEIENRFFIDYVISKC--SDLEINRLDKIVLEILRMATTEILFM 88

Query: 119 HSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSR 155
            +    V+  E V +A          ++NAVL +V R
Sbjct: 89  KTADYAVV-DEAVELAS--SITRYKDYVNAVLREVCR 122


>gi|293364893|ref|ZP_06611610.1| RNA methyltransferase Sun [Streptococcus oralis ATCC 35037]
 gi|307703146|ref|ZP_07640092.1| ribosomal RNA small subunit methyltransferase B [Streptococcus
           oralis ATCC 35037]
 gi|291316343|gb|EFE56779.1| RNA methyltransferase Sun [Streptococcus oralis ATCC 35037]
 gi|307623221|gb|EFO02212.1| ribosomal RNA small subunit methyltransferase B [Streptococcus
           oralis ATCC 35037]
          Length = 437

 Score = 66.3 bits (161), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 30/139 (21%), Positives = 56/139 (40%), Gaps = 15/139 (10%)

Query: 18  IARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVM 77
            AR  A+  L           E +   + Y   A  +    S +   D      I++G +
Sbjct: 6   TARSLALAVL-----------EDVLVNQAYSNIALNKHLKGSQFSAADKGLVTEIVYGTV 54

Query: 78  DRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDF 137
            RK  ++  +S  + ++    +LD  L  +L     +L     +P   +++E V +A   
Sbjct: 55  ARKLTLEWYLSHFIQDR---DKLDNWLYILLLLSAYQLRYLDKIPNHAVVNEAVDLAKAR 111

Query: 138 FYGDEPKFINAVLDKVSRK 156
             G   K +NAVL ++ R+
Sbjct: 112 KKG-SEKLVNAVLRRILRE 129


>gi|199597150|ref|ZP_03210582.1| tRNA and rRNA cytosine-C5-methylase [Lactobacillus rhamnosus HN001]
 gi|199591954|gb|EDZ00029.1| tRNA and rRNA cytosine-C5-methylase [Lactobacillus rhamnosus HN001]
          Length = 446

 Score = 66.3 bits (161), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 30/150 (20%), Positives = 57/150 (38%), Gaps = 21/150 (14%)

Query: 20  RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79
           RL AVQ L          T ++ +        D  +    +    D      +++GV+  
Sbjct: 7   RLLAVQTL----------TRVMGKGGYSNLTLDHVITKYQLDSR-DAGLLTNVVYGVIQH 55

Query: 80  KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139
           +  +D L++  +  +    +LD  +  +L+  V +L     VP   +  +   IA    +
Sbjct: 56  QLTLDYLLAPFVKNR----QLDTWVRCLLQTAVYQLQYLDKVPARAVFFDSTEIAKKLGH 111

Query: 140 GDEPKFINAVLDKVSRKEEIKRSGCVSAIT 169
               KF+  VL       + +RSG    +T
Sbjct: 112 QGVAKFVTGVL------RQAQRSGYPDPMT 135


>gi|332072908|gb|EGI83389.1| ribosomal RNA small subunit methyltransferase B [Streptococcus
           pneumoniae GA17545]
          Length = 437

 Score = 66.3 bits (161), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 28/139 (20%), Positives = 54/139 (38%), Gaps = 15/139 (10%)

Query: 18  IARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVM 77
            AR  A+  L           E +   + Y   A  +    S     D      +++G +
Sbjct: 6   TARSLALAVL-----------EDVFVNQAYSNIALNKHLKGSQLSAADKGLVTELVYGTV 54

Query: 78  DRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDF 137
            RK  ++  +S  + ++    +LD  L  +L     +L     +P   +++E V +A   
Sbjct: 55  ARKLTLEWYLSHFIEDR---DQLDSWLYVLLLMSAYQLRYLDKIPDHAVVNEAVELAK-L 110

Query: 138 FYGDEPKFINAVLDKVSRK 156
                 K +NAVL ++ R+
Sbjct: 111 RKKGSEKLVNAVLRRILRE 129


>gi|149006597|ref|ZP_01830296.1| rRNA methylase [Streptococcus pneumoniae SP18-BS74]
 gi|147761895|gb|EDK68858.1| rRNA methylase [Streptococcus pneumoniae SP18-BS74]
          Length = 438

 Score = 66.3 bits (161), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 28/139 (20%), Positives = 54/139 (38%), Gaps = 15/139 (10%)

Query: 18  IARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVM 77
            AR  A+  L           E +   + Y   A  +    S     D      +++G +
Sbjct: 7   TARSLALAVL-----------EDVFVNQAYSNIALNKHLKGSQLSAADKGLVTELVYGTV 55

Query: 78  DRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDF 137
            RK  ++  +S  + ++    +LD  L  +L     +L     +P   +++E V +A   
Sbjct: 56  ARKLTLEWYLSHFIEDR---DQLDSWLYVLLLMSAYQLRYLDKIPDHAVVNEAVELAK-L 111

Query: 138 FYGDEPKFINAVLDKVSRK 156
                 K +NAVL ++ R+
Sbjct: 112 RKKGSEKLVNAVLRRILRE 130


>gi|311113844|ref|YP_003985066.1| exopolyphosphatase [Rothia dentocariosa ATCC 17931]
 gi|310945338|gb|ADP41632.1| exopolyphosphatase [Rothia dentocariosa ATCC 17931]
          Length = 536

 Score = 66.3 bits (161), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 29/145 (20%), Positives = 55/145 (37%), Gaps = 16/145 (11%)

Query: 14  HRRGI--ARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71
             R    ARL A + L             +++ ++Y               H D  +   
Sbjct: 36  RSRSADPARLVAFEVL-----------NAVAQNDSYANLVLPGTIRAHHLDHRDAGFATE 84

Query: 72  IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
           + +G +  +   D +++ C        ++      +LR GV +L+    VP    +++ V
Sbjct: 85  LTYGTLRSQGTYDAILAHCADR--PLEKIGTTTLIVLRMGVHQLLSMR-VPAHAALNQSV 141

Query: 132 CIAHDFFYGDEPKFINAVLDKVSRK 156
            +A     G    F+NAVL +VS +
Sbjct: 142 ALARAQIGGGPANFVNAVLRRVSER 166


>gi|300741740|ref|ZP_07071761.1| ribosomal RNA small subunit methyltransferase B [Rothia
           dentocariosa M567]
 gi|300380925|gb|EFJ77487.1| ribosomal RNA small subunit methyltransferase B [Rothia
           dentocariosa M567]
          Length = 580

 Score = 66.3 bits (161), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 29/145 (20%), Positives = 55/145 (37%), Gaps = 16/145 (11%)

Query: 14  HRRGI--ARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71
             R    ARL A + L             +++ ++Y               H D  +   
Sbjct: 80  RSRSADPARLVAFEVL-----------NAVAQNDSYANLVLPGTIRAHHLDHRDAGFATE 128

Query: 72  IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
           + +G +  +   D +++ C        ++      +LR GV +L+    VP    +++ V
Sbjct: 129 LTYGTLRSQGTYDAILAHCADR--PLEKIGTTTLIVLRMGVHQLLSMR-VPAHAALNQSV 185

Query: 132 CIAHDFFYGDEPKFINAVLDKVSRK 156
            +A     G    F+NAVL +VS +
Sbjct: 186 ALARAQIGGGPANFVNAVLRRVSER 210


>gi|258508664|ref|YP_003171415.1| tRNA and rRNA cytosine-C5-methytransferase [Lactobacillus rhamnosus
           GG]
 gi|257148591|emb|CAR87564.1| tRNA and rRNA cytosine-C5-methytransferase (sun protein)
           [Lactobacillus rhamnosus GG]
 gi|259649970|dbj|BAI42132.1| RNA methyltransferase [Lactobacillus rhamnosus GG]
          Length = 446

 Score = 66.3 bits (161), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 30/150 (20%), Positives = 57/150 (38%), Gaps = 21/150 (14%)

Query: 20  RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79
           RL AVQ L          T ++ +        D  +    +    D      +++GV+  
Sbjct: 7   RLLAVQTL----------TRVMGKGGYSNLTLDHVITKYQLDSR-DAGLLTNVVYGVIQH 55

Query: 80  KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139
           +  +D L++  +  +    +LD  +  +L+  V +L     VP   +  +   IA    +
Sbjct: 56  QLTLDYLLAPFVKNR----QLDTWVRCLLQTAVYQLQYLDKVPARAVFFDSTEIAKKLGH 111

Query: 140 GDEPKFINAVLDKVSRKEEIKRSGCVSAIT 169
               KF+  VL       + +RSG    +T
Sbjct: 112 QGVAKFVTGVL------RQAQRSGYPDPMT 135


>gi|302023430|ref|ZP_07248641.1| ribosomal RNA small subunit methyltransferase [Streptococcus suis
           05HAS68]
          Length = 444

 Score = 66.3 bits (161), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 32/156 (20%), Positives = 64/156 (41%), Gaps = 21/156 (13%)

Query: 14  HRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVII 73
           ++   AR  A+  L           E + +   Y   A  +    S     D      ++
Sbjct: 4   NKHETARSLALSVL-----------EQVFDQGAYSNIALNKALESSRLSAQDKGLATELV 52

Query: 74  HGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCI 133
           +G + RK  ++  ++  + ++    +LD  +  +L   + +L+    +P   +++E V I
Sbjct: 53  YGTVSRKITLEWYLAHFIEDR---EKLDTWVYYLLMLSLYQLVYLDKLPTHAVVNEAVNI 109

Query: 134 AHDFFYGDEPKFINAVLDKVS-----RKEEIKRSGC 164
           A      D  KF+NA+L K+S     +  +IKR   
Sbjct: 110 AKRKPGTD--KFVNAILRKLSQDSLPKPADIKRKNK 143


>gi|322377784|ref|ZP_08052273.1| ribosomal RNA small subunit methyltransferase B [Streptococcus sp.
           M334]
 gi|321281207|gb|EFX58218.1| ribosomal RNA small subunit methyltransferase B [Streptococcus sp.
           M334]
          Length = 437

 Score = 66.3 bits (161), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 30/139 (21%), Positives = 55/139 (39%), Gaps = 15/139 (10%)

Query: 18  IARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVM 77
            AR  A+  L           E +   + Y   A  +    S     D      I++G +
Sbjct: 6   TARSLALAGL-----------EDVFINQAYSNIALNKHLKGSQLSAADKGLVTEIVYGTV 54

Query: 78  DRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDF 137
            RK  ++  +S  + ++    +LD  L  +L     +L     +P   +++E V +A   
Sbjct: 55  ARKLTLEWYLSHFIEDR---DQLDSWLYVLLLMSAYQLRYLDKIPDHAVVNEAVELAKVR 111

Query: 138 FYGDEPKFINAVLDKVSRK 156
             G   K +NAVL ++ R+
Sbjct: 112 KKG-SEKLVNAVLRRILRE 129


>gi|224061230|ref|XP_002300381.1| predicted protein [Populus trichocarpa]
 gi|222847639|gb|EEE85186.1| predicted protein [Populus trichocarpa]
          Length = 527

 Score = 66.3 bits (161), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 23/102 (22%), Positives = 46/102 (45%), Gaps = 1/102 (0%)

Query: 59  SVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIEC 118
                 DL     I+ G +  ++++D LI S   ++ +F  ++ +L  ILR G  E+++ 
Sbjct: 106 KDLDDRDLRLVTDIVGGTIRWRRYLDYLIGSLCHDEKAFRSMEPLLLQILRIGFYEIVK- 164

Query: 119 HSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIK 160
             +P   ++ E V +A           +N +L K+   +E  
Sbjct: 165 LDMPSYAVVDENVRLAKVSLRPGAGNMVNGILRKLVLLKESN 206


>gi|148994053|ref|ZP_01823409.1| hypothetical protein CGSSp9BS68_01863 [Streptococcus pneumoniae
           SP9-BS68]
 gi|168488547|ref|ZP_02712746.1| ribosomal RNA small subunit methyltransferase B [Streptococcus
           pneumoniae SP195]
 gi|147927520|gb|EDK78548.1| hypothetical protein CGSSp9BS68_01863 [Streptococcus pneumoniae
           SP9-BS68]
 gi|183572591|gb|EDT93119.1| ribosomal RNA small subunit methyltransferase B [Streptococcus
           pneumoniae SP195]
          Length = 437

 Score = 66.3 bits (161), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 28/139 (20%), Positives = 54/139 (38%), Gaps = 15/139 (10%)

Query: 18  IARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVM 77
            AR  A+  L           E +   + Y   A  +    S     D      +++G +
Sbjct: 6   TARSLALAVL-----------EDVFVNQAYSNIALNKHLKGSQLSAADKGLVTELVYGTV 54

Query: 78  DRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDF 137
            RK  ++  +S  + ++    +LD  L  +L     +L     +P   +++E V +A   
Sbjct: 55  ARKLTLEWYLSHFIEDR---DQLDSWLYVLLLMSAYQLRYLDKIPDHAVVNEAVELAK-L 110

Query: 138 FYGDEPKFINAVLDKVSRK 156
                 K +NAVL ++ R+
Sbjct: 111 RKKGSEKLVNAVLRRILRE 129


>gi|183982229|ref|YP_001850520.1| Fmu protein [Mycobacterium marinum M]
 gi|183175555|gb|ACC40665.1| Fmu protein [Mycobacterium marinum M]
          Length = 481

 Score = 66.3 bits (161), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 39/171 (22%), Positives = 59/171 (34%), Gaps = 30/171 (17%)

Query: 4   QDNKKDLKLSH-------------RRGI---ARLAAVQALYQIDIIGCSTTEIISEYETY 47
           Q N+ D K                RR     AR AA  AL             +SE   Y
Sbjct: 9   QRNRPDRKPRRSEGTGVPNQRRGPRRRPLDPARGAAFNAL-----------RAVSERNAY 57

Query: 48  RFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSI 107
                  L  E      D  +   + +G    +  +D +I +      S   +D +L  +
Sbjct: 58  ANLVLPALLRERGITGRDAAFATELTYGACRARGLLDAIIGAA--AGRSPEAIDPVLLDL 115

Query: 108 LRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEE 158
           LR G  +L+    V     +S  V  A   F      F+NAVL  ++ ++E
Sbjct: 116 LRLGAYQLL-RTRVDAHAAVSTTVEQAGIEFDSARAGFVNAVLRTIADRDE 165


>gi|148989395|ref|ZP_01820763.1| hypothetical protein CGSSp6BS73_07854 [Streptococcus pneumoniae
           SP6-BS73]
 gi|147925145|gb|EDK76225.1| hypothetical protein CGSSp6BS73_07854 [Streptococcus pneumoniae
           SP6-BS73]
          Length = 437

 Score = 66.3 bits (161), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 28/139 (20%), Positives = 54/139 (38%), Gaps = 15/139 (10%)

Query: 18  IARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVM 77
            AR  A+  L           E +   + Y   A  +    S     D      +++G +
Sbjct: 6   TARSLALAVL-----------EDVFVNQAYSNIALNKHLKGSQLSAADKGLVTELVYGTV 54

Query: 78  DRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDF 137
            RK  ++  +S  + ++    +LD  L  +L     +L     +P   +++E V +A   
Sbjct: 55  ARKLTLEWYLSHFIEDR---DQLDSWLYVLLLMSAYQLRYLDKIPDHAVVNEAVELAK-L 110

Query: 138 FYGDEPKFINAVLDKVSRK 156
                 K +NAVL ++ R+
Sbjct: 111 RKKGSEKLVNAVLRRILRE 129


>gi|225859487|ref|YP_002740997.1| ribosomal RNA small subunit methyltransferase B [Streptococcus
           pneumoniae 70585]
 gi|225721429|gb|ACO17283.1| ribosomal RNA small subunit methyltransferase B [Streptococcus
           pneumoniae 70585]
          Length = 437

 Score = 66.3 bits (161), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 28/139 (20%), Positives = 54/139 (38%), Gaps = 15/139 (10%)

Query: 18  IARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVM 77
            AR  A+  L           E +   + Y   A  +    S     D      +++G +
Sbjct: 6   TARSLALAVL-----------EDVFVNQAYSNIALNKHLKGSQLSAADKGLVTELVYGTV 54

Query: 78  DRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDF 137
            RK  ++  +S  + ++    +LD  L  +L     +L     +P   +++E V +A   
Sbjct: 55  ARKLTLEWYLSHFIEDR---DQLDSWLYVLLLMSAYQLRYLDKIPDHAVVNEAVELAK-L 110

Query: 138 FYGDEPKFINAVLDKVSRK 156
                 K +NAVL ++ R+
Sbjct: 111 RKKGSEKLVNAVLRRILRE 129


>gi|194397538|ref|YP_002038345.1| ribosomal RNA small subunit methyltransferase B [Streptococcus
           pneumoniae G54]
 gi|194357205|gb|ACF55653.1| ribosomal RNA small subunit methyltransferase B [Streptococcus
           pneumoniae G54]
 gi|301794709|emb|CBW37160.1| putative ribosomal RNA small subunit methyltransferase
           [Streptococcus pneumoniae INV104]
          Length = 437

 Score = 66.3 bits (161), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 28/139 (20%), Positives = 54/139 (38%), Gaps = 15/139 (10%)

Query: 18  IARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVM 77
            AR  A+  L           E +   + Y   A  +    S     D      +++G +
Sbjct: 6   TARSLALAVL-----------EDVFVNQAYSNIALNKHLKGSQLSAADKGLVTELVYGTV 54

Query: 78  DRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDF 137
            RK  ++  +S  + ++    +LD  L  +L     +L     +P   +++E V +A   
Sbjct: 55  ARKLTLEWYLSHFIEDR---DQLDSWLYVLLLMSAYQLRYLDKIPDHAVVNEAVELAK-L 110

Query: 138 FYGDEPKFINAVLDKVSRK 156
                 K +NAVL ++ R+
Sbjct: 111 RKKGSEKLVNAVLRRILRE 129


>gi|269956515|ref|YP_003326304.1| Fmu (Sun) domain-containing protein [Xylanimonas cellulosilytica
           DSM 15894]
 gi|269305196|gb|ACZ30746.1| Fmu (Sun) domain protein [Xylanimonas cellulosilytica DSM 15894]
          Length = 517

 Score = 66.3 bits (161), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 32/151 (21%), Positives = 55/151 (36%), Gaps = 17/151 (11%)

Query: 6   NKKDLKLSHRRGI---ARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYL 62
           ++     S RR     AR AA   L             +   + Y       L  E    
Sbjct: 33  SRTTQAPSQRRRRTDPARTAAFDVL-----------RDVDGSDAYANLVLPPLLRERGIT 81

Query: 63  HVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVP 122
             D  +   + +G +  +   D +++ C+       RLD  +  +LR G  +++    VP
Sbjct: 82  GRDAAFATELTYGTLRLRGRYDAILTRCVDR--PLDRLDPDVLDVLRLGAHQILGMR-VP 138

Query: 123 VEVIISEYVCIAHDFFYGDEPKFINAVLDKV 153
               +SE V +  D       + +NAVL +V
Sbjct: 139 THAAVSETVALTRDRVGTGASQLVNAVLRRV 169


>gi|255994461|ref|ZP_05427596.1| 16S rRNA M(5)C 967 methyltransferase [Eubacterium saphenum ATCC
           49989]
 gi|255993174|gb|EEU03263.1| 16S rRNA M(5)C 967 methyltransferase [Eubacterium saphenum ATCC
           49989]
          Length = 461

 Score = 66.3 bits (161), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 32/144 (22%), Positives = 58/144 (40%), Gaps = 19/144 (13%)

Query: 20  RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79
           RLAA  ALY I+  G  +     E                     +  + R ++ G +  
Sbjct: 11  RLAAFWALYNIE-KGKYSNVAFEE-------------STKGLSAREAAFVRELVFGTLKL 56

Query: 80  KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139
              +D  ++    +K   +R+ +    +LR G+ +L    SVP    ++E + IA     
Sbjct: 57  NIKLDHAMNHLKDKK---ARIKLKDRILLRLGLYQLDYMDSVPDYAAVNETIAIAKKLVK 113

Query: 140 GDEPKFINAVL-DKVSRKEEIKRS 162
                 INA+L   + +++EI+ S
Sbjct: 114 NK-VGLINAILRGYIRKRQEIEDS 136


>gi|254415201|ref|ZP_05028963.1| ribosomal RNA small subunit methyltransferase B [Microcoleus
           chthonoplastes PCC 7420]
 gi|196178007|gb|EDX73009.1| ribosomal RNA small subunit methyltransferase B [Microcoleus
           chthonoplastes PCC 7420]
          Length = 448

 Score = 66.3 bits (161), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 25/136 (18%), Positives = 43/136 (31%), Gaps = 13/136 (9%)

Query: 20  RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79
           R  A  AL  I   G  T   +     +           +     D      +++G    
Sbjct: 5   RQLAFLALRDIHSHGAFTDIALDRVLRH-----------TTLNRPDRALLTDLVYGTTRH 53

Query: 80  KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139
            + +D LI     +K         L  IL  G+ +L     +P    ++  V +A     
Sbjct: 54  TRTLDALIDQLGKKKAHQQ--PPDLRLILHLGLYQLRYLQRIPPSAAVNTSVELAKANQL 111

Query: 140 GDEPKFINAVLDKVSR 155
                 +N VL + +R
Sbjct: 112 KGLAGVVNGVLRQYAR 127


>gi|183603236|ref|ZP_02710913.2| ribosomal RNA small subunit methyltransferase B [Streptococcus
           pneumoniae CDC1087-00]
 gi|307127948|ref|YP_003879979.1| ribosomal RNA small subunit methyltransferase B [Streptococcus
           pneumoniae 670-6B]
 gi|183570571|gb|EDT91099.1| ribosomal RNA small subunit methyltransferase B [Streptococcus
           pneumoniae CDC1087-00]
 gi|306485010|gb|ADM91879.1| ribosomal RNA small subunit methyltransferase B [Streptococcus
           pneumoniae 670-6B]
 gi|332199760|gb|EGJ13835.1| ribosomal RNA small subunit methyltransferase B [Streptococcus
           pneumoniae GA41317]
          Length = 437

 Score = 66.3 bits (161), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 28/139 (20%), Positives = 54/139 (38%), Gaps = 15/139 (10%)

Query: 18  IARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVM 77
            AR  A+  L           E +   + Y   A  +    S     D      +++G +
Sbjct: 6   TARSLALAVL-----------EDVFVNQAYSNIALNKHLKGSQLSAADKGLVTELVYGTV 54

Query: 78  DRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDF 137
            RK  ++  +S  + ++    +LD  L  +L     +L     +P   +++E V +A   
Sbjct: 55  ARKLTLEWYLSHFIEDR---DQLDSWLYVLLLMSAYQLRYLDKIPDHAVVNEAVELAK-L 110

Query: 138 FYGDEPKFINAVLDKVSRK 156
                 K +NAVL ++ R+
Sbjct: 111 RKKGSEKLVNAVLRRILRE 129


>gi|319757554|gb|ADV69496.1| tRNA and rRNA cytosine-C5-methylase [Streptococcus suis JS14]
          Length = 436

 Score = 66.3 bits (161), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 32/158 (20%), Positives = 65/158 (41%), Gaps = 21/158 (13%)

Query: 12  LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71
           + ++   AR  A+  L           E + +   Y   A  +    S     D      
Sbjct: 1   MINKHETARSLALSVL-----------EQVFDQGAYSNIALNKALESSRLSAQDKGLATE 49

Query: 72  IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
           +++G + RK  ++  ++  + ++    +LD  +  +L   + +L+    +P   +++E V
Sbjct: 50  LVYGTVSRKITLEWYLAHFIEDR---EKLDTWVYYLLMLSLYQLVYLDKLPTHAVVNEAV 106

Query: 132 CIAHDFFYGDEPKFINAVLDKVS-----RKEEIKRSGC 164
            IA      D  KF+NA+L K+S     +  +IKR   
Sbjct: 107 NIAKRKPGTD--KFVNAILRKLSQDSLPKPADIKRKNK 142


>gi|118463294|ref|YP_882553.1| Fmu protein [Mycobacterium avium 104]
 gi|118164581|gb|ABK65478.1| Fmu protein [Mycobacterium avium 104]
          Length = 439

 Score = 65.9 bits (160), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 26/119 (21%), Positives = 47/119 (39%), Gaps = 3/119 (2%)

Query: 40  IISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSR 99
            +SE + Y   A   L  E      D  +   + +G    +  +D +I +          
Sbjct: 4   AVSERDAYANLALPALLRERGITGRDAAFATELTYGTCRTRGLLDAVIGAA--AGRPPEA 61

Query: 100 LDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEE 158
           +D +L  +LR G  +L+    V     +S  V  A   F      F+N VL +++ ++E
Sbjct: 62  IDPVLLDLLRLGTYQLL-RTRVDAHAAVSTTVEQAAIEFDSARAGFVNGVLRRIAGRDE 119


>gi|218245524|ref|YP_002370895.1| sun protein [Cyanothece sp. PCC 8801]
 gi|218166002|gb|ACK64739.1| sun protein [Cyanothece sp. PCC 8801]
          Length = 451

 Score = 65.9 bits (160), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 26/126 (20%), Positives = 49/126 (38%), Gaps = 5/126 (3%)

Query: 40  IISEYETYRFCADTELD---VESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWS 96
           I+ E E      D  +D     +     D      +++G++ RK+ +D LI   L +K S
Sbjct: 17  ILREIERRGTFTDIAIDRGLKSTDLSGSDRALVTELVYGIVRRKRTLDTLIDQ-LGKKAS 75

Query: 97  FSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRK 156
             +    L  IL  G+ +L     +P    ++  V +A +         +N +L +  R 
Sbjct: 76  HQQ-PPDLRLILYIGLYQLRYLSQIPPSAAVNTAVNLAKENSLQRLSGVVNGILRQYIRL 134

Query: 157 EEIKRS 162
            +    
Sbjct: 135 AQENND 140


>gi|332362987|gb|EGJ40776.1| RNA methyltransferase Sun [Streptococcus sanguinis SK49]
          Length = 438

 Score = 65.9 bits (160), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 32/145 (22%), Positives = 60/145 (41%), Gaps = 15/145 (10%)

Query: 12  LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71
           +  ++  AR  A++ L           E+  E   Y   A      +S     D      
Sbjct: 1   MESKQKTARWQALEIL----------EEVFEE-RAYSNIALNRALSQSPLSQADKGLVTE 49

Query: 72  IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
           +++G + RK  ++  +S  L E    ++LD  L  +L   + +++    +P    + E V
Sbjct: 50  LVYGTVARKITLEWYLS-HLIEDR--NKLDNWLYILLMLSLYQMLFLDKIPQHAAVHEAV 106

Query: 132 CIAHDFFYGDEPKFINAVLDKVSRK 156
            IA     G   KF+NA+L ++ R+
Sbjct: 107 EIAKIRKRG-SEKFVNALLRRIERE 130


>gi|146318081|ref|YP_001197793.1| tRNA and rRNA cytosine-C5-methylase [Streptococcus suis 05ZYH33]
 gi|146320260|ref|YP_001199971.1| tRNA and rRNA cytosine-C5-methylase [Streptococcus suis 98HAH33]
 gi|253751274|ref|YP_003024415.1| ribosomal RNA small subunit methyltransferase [Streptococcus suis
           SC84]
 gi|253753175|ref|YP_003026315.1| ribosomal RNA small subunit methyltransferase [Streptococcus suis
           P1/7]
 gi|253754998|ref|YP_003028138.1| ribosomal RNA small subunit methyltransferase [Streptococcus suis
           BM407]
 gi|145688887|gb|ABP89393.1| tRNA and rRNA cytosine-C5-methylase [Streptococcus suis 05ZYH33]
 gi|145691066|gb|ABP91571.1| tRNA and rRNA cytosine-C5-methylase [Streptococcus suis 98HAH33]
 gi|251815563|emb|CAZ51146.1| putative ribosomal RNA small subunit methyltransferase
           [Streptococcus suis SC84]
 gi|251817462|emb|CAZ55203.1| putative ribosomal RNA small subunit methyltransferase
           [Streptococcus suis BM407]
 gi|251819420|emb|CAR44892.1| putative ribosomal RNA small subunit methyltransferase
           [Streptococcus suis P1/7]
 gi|292557843|gb|ADE30844.1| rRNA SAM-dependent methyltransferase [Streptococcus suis GZ1]
          Length = 437

 Score = 65.9 bits (160), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 32/156 (20%), Positives = 64/156 (41%), Gaps = 21/156 (13%)

Query: 14  HRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVII 73
           ++   AR  A+  L           E + +   Y   A  +    S     D      ++
Sbjct: 4   NKHETARSLALSVL-----------EQVFDQGAYSNIALNKALESSRLSAQDKGLATELV 52

Query: 74  HGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCI 133
           +G + RK  ++  ++  + ++    +LD  +  +L   + +L+    +P   +++E V I
Sbjct: 53  YGTVSRKITLEWYLAHFIEDR---EKLDTWVYYLLMLSLYQLVYLDKLPTHAVVNEAVNI 109

Query: 134 AHDFFYGDEPKFINAVLDKVS-----RKEEIKRSGC 164
           A      D  KF+NA+L K+S     +  +IKR   
Sbjct: 110 AKRKPGTD--KFVNAILRKLSQDSLPKPADIKRKNK 143


>gi|115376613|ref|ZP_01463843.1| ribosomal RNA small subunit methyltransferase B [Stigmatella
           aurantiaca DW4/3-1]
 gi|115366356|gb|EAU65361.1| ribosomal RNA small subunit methyltransferase B [Stigmatella
           aurantiaca DW4/3-1]
          Length = 425

 Score = 65.9 bits (160), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 24/103 (23%), Positives = 40/103 (38%), Gaps = 3/103 (2%)

Query: 52  DTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAG 111
           DT L         D      + +G   R+  +D  I+     K     ++  + + LR G
Sbjct: 13  DTALSEAPPRDARDTALATELAYGTTRRQLALDYAITRFADRK--LDAMEDRVLAALRIG 70

Query: 112 VLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVS 154
             +L     VP    ++E V    D   G    F+NA+L K++
Sbjct: 71  AYQLFYTR-VPARAAVAETVQALKDLGVGRAAGFVNAILRKLA 112


>gi|227431998|ref|ZP_03914018.1| RNA methyltransferase [Leuconostoc mesenteroides subsp. cremoris
           ATCC 19254]
 gi|227352283|gb|EEJ42489.1| RNA methyltransferase [Leuconostoc mesenteroides subsp. cremoris
           ATCC 19254]
          Length = 448

 Score = 65.9 bits (160), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 25/148 (16%), Positives = 56/148 (37%), Gaps = 19/148 (12%)

Query: 12  LSHRRGIA---RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEW 68
           +S +R  +   R+ AVQ L               +   Y      ++  +      D   
Sbjct: 1   MSDKRVYSDNPRVLAVQTL------------AKIKNGAYSNLQLNQVIKQHKLGEADTRL 48

Query: 69  FRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIIS 128
              +++GV+  +   +  +   +  K    ++D  +  +L   + ++     +P   I +
Sbjct: 49  LTTLVYGVIQHRLTFEYWLEPFVGSK----KIDPWVRELLYTAIFQMEYLDKIPQHAIFN 104

Query: 129 EYVCIAHDFFYGDEPKFINAVLDKVSRK 156
           E + +A    +    KF+ A+L  +SRK
Sbjct: 105 ESIEVAKILGHVGTGKFVTAILHNISRK 132


>gi|257058561|ref|YP_003136449.1| sun protein [Cyanothece sp. PCC 8802]
 gi|256588727|gb|ACU99613.1| sun protein [Cyanothece sp. PCC 8802]
          Length = 451

 Score = 65.9 bits (160), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 26/126 (20%), Positives = 49/126 (38%), Gaps = 5/126 (3%)

Query: 40  IISEYETYRFCADTELD---VESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWS 96
           I+ E E      D  +D     +     D      +++G++ RK+ +D LI   L +K S
Sbjct: 17  ILREIERRGTFTDIAIDRGLKSTDLSGSDRALVTELVYGIVRRKRTLDTLIDQ-LGKKAS 75

Query: 97  FSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRK 156
             +    L  IL  G+ +L     +P    ++  V +A +         +N +L +  R 
Sbjct: 76  HQQ-PPDLRLILYIGLYQLRYLSQIPPSAAVNTAVNLAKENSLQRLSGVVNGILRQYIRL 134

Query: 157 EEIKRS 162
            +    
Sbjct: 135 AQENND 140


>gi|309798767|ref|ZP_07693031.1| ribosomal RNA small subunit methyltransferase B [Streptococcus
           infantis SK1302]
 gi|308117584|gb|EFO54996.1| ribosomal RNA small subunit methyltransferase B [Streptococcus
           infantis SK1302]
          Length = 437

 Score = 65.9 bits (160), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 31/139 (22%), Positives = 57/139 (41%), Gaps = 15/139 (10%)

Query: 18  IARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVM 77
            AR  A++ L           E +   + Y   A  +    S     D      +++G +
Sbjct: 6   TARNLALKVL-----------EDVFVNQAYSNIALNKHLKGSQLSATDKGLVTELVYGTV 54

Query: 78  DRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDF 137
            RK  ++  +S  + ++    +LD  L  +L   V +L     +P   +++E V IA   
Sbjct: 55  ARKLTLEWYLSHFIEDR---DKLDNWLYVLLLMSVYQLQYLDKLPDHAVVNEAVEIAKSR 111

Query: 138 FYGDEPKFINAVLDKVSRK 156
             G   K +NAVL ++ R+
Sbjct: 112 KKG-SEKLVNAVLRRILRE 129


>gi|116618607|ref|YP_818978.1| tRNA and rRNA cytosine-C5-methylase [Leuconostoc mesenteroides
           subsp. mesenteroides ATCC 8293]
 gi|116097454|gb|ABJ62605.1| tRNA and rRNA cytosine-C5-methylase [Leuconostoc mesenteroides
           subsp. mesenteroides ATCC 8293]
          Length = 448

 Score = 65.9 bits (160), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 25/148 (16%), Positives = 56/148 (37%), Gaps = 19/148 (12%)

Query: 12  LSHRRGIA---RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEW 68
           +S +R  +   R+ AVQ L               +   Y      ++  +      D   
Sbjct: 1   MSDKRVYSDNPRVLAVQTL------------AKIKNGAYSNLQLNQVIKQHKLGEADTRL 48

Query: 69  FRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIIS 128
              +++GV+  +   +  +   +  K    ++D  +  +L   + ++     +P   I +
Sbjct: 49  LTTLVYGVIQHRLTFEYWLEPFVGSK----KIDPWVRELLYTAIFQMEYLDKIPQHAIFN 104

Query: 129 EYVCIAHDFFYGDEPKFINAVLDKVSRK 156
           E + +A    +    KF+ A+L  +SRK
Sbjct: 105 ESIEVAKILGHVGTGKFVTAILHNISRK 132


>gi|223932608|ref|ZP_03624608.1| sun protein [Streptococcus suis 89/1591]
 gi|223898718|gb|EEF65079.1| sun protein [Streptococcus suis 89/1591]
          Length = 436

 Score = 65.9 bits (160), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 29/144 (20%), Positives = 61/144 (42%), Gaps = 16/144 (11%)

Query: 12  LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71
           + ++   AR  A+  L           E + +   Y   A  +    S     D      
Sbjct: 1   MINKHETARSLALSVL-----------EQVFDQGAYSNIALNKALESSRLSAQDKGLATE 49

Query: 72  IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
           +++G + RK  ++  ++  + ++    +LD  +  +L   + +L+    +P   +++E V
Sbjct: 50  LVYGTVSRKITLEWYLAHFIEDR---EKLDTWIYYLLMLSLYQLVYLDKLPTHAVVNEAV 106

Query: 132 CIAHDFFYGDEPKFINAVLDKVSR 155
            IA      D  KF+NA+L K+S+
Sbjct: 107 NIAKRKPGTD--KFVNAILRKISQ 128


>gi|332072565|gb|EGI83048.1| nusB family protein [Streptococcus pneumoniae GA17570]
          Length = 153

 Score = 65.9 bits (160), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 28/139 (20%), Positives = 54/139 (38%), Gaps = 15/139 (10%)

Query: 18  IARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVM 77
            AR  A+  L           E +   + Y   A  +    S     D      +++G +
Sbjct: 6   TARSLALAVL-----------EDVFVNQAYSNIALNKHLKGSQLSAADKGLVTELVYGTV 54

Query: 78  DRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDF 137
            RK  ++  +S  + ++    +LD  L  +L     +L     +P   +++E V +A   
Sbjct: 55  ARKLTLEWYLSHFIEDR---DQLDSWLYVLLLMSAYQLRYLDKIPDHAVVNEAVELAK-L 110

Query: 138 FYGDEPKFINAVLDKVSRK 156
                 K +NAVL ++ R+
Sbjct: 111 RKKGSEKLVNAVLRRILRE 129


>gi|322374811|ref|ZP_08049325.1| ribosomal RNA small subunit methyltransferase B [Streptococcus sp.
           C300]
 gi|321280311|gb|EFX57350.1| ribosomal RNA small subunit methyltransferase B [Streptococcus sp.
           C300]
          Length = 437

 Score = 65.9 bits (160), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 30/139 (21%), Positives = 55/139 (39%), Gaps = 15/139 (10%)

Query: 18  IARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVM 77
            AR  A+  L           E +   + Y   A  +    S     D      I++G +
Sbjct: 6   TARSLALAVL-----------EDVLVNQAYSNIALNKHLKGSQLSVADKGLVTEIVYGTV 54

Query: 78  DRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDF 137
            RK  ++  +S  + ++    +LD  L  +L     +L     +P   +++E V +A   
Sbjct: 55  ARKLTLEWYLSHFIQDR---DKLDNWLYILLLLSAYQLRYLDKIPNHAVVNEAVELAKAR 111

Query: 138 FYGDEPKFINAVLDKVSRK 156
             G   K +NAVL ++ R+
Sbjct: 112 KKG-SEKLVNAVLRRILRE 129


>gi|254423387|ref|ZP_05037105.1| ribosomal RNA small subunit methyltransferase B [Synechococcus sp.
           PCC 7335]
 gi|196190876|gb|EDX85840.1| ribosomal RNA small subunit methyltransferase B [Synechococcus sp.
           PCC 7335]
          Length = 491

 Score = 65.9 bits (160), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 32/145 (22%), Positives = 61/145 (42%), Gaps = 6/145 (4%)

Query: 12  LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71
            + +   AR  A +AL  ID    +  +++ + +       T+L ++      D      
Sbjct: 31  KTAKPKTARQIAFEALRAIDQG--AFADVVIDRKLKGTQTGTQLGIQ--LSSQDKGLVTE 86

Query: 72  IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
           +++G + R++ +D LI          S+    L  ILR G  +L     VPV  ++   V
Sbjct: 87  LVYGSVRRRRTLDALIDQFGKR--PASKQHRDLLQILRLGFYQLRYLDHVPVHAVVDTTV 144

Query: 132 CIAHDFFYGDEPKFINAVLDKVSRK 156
            +A     G     +NA+L + +R+
Sbjct: 145 QLAKSQRLGKLSGVVNAMLRQYARE 169


>gi|222153508|ref|YP_002562685.1| ribosomal RNA small subunit methyltransferase [Streptococcus uberis
           0140J]
 gi|222114321|emb|CAR43000.1| putative ribosomal RNA small subunit methyltransferase
           [Streptococcus uberis 0140J]
          Length = 440

 Score = 65.5 bits (159), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 31/139 (22%), Positives = 58/139 (41%), Gaps = 15/139 (10%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           +  AR  A+ A+           E I +   Y   A  +          D      I++G
Sbjct: 6   KREARGKALMAI-----------EDIFDNGAYSNLALNQHLNHQALNAKDKALITEIVYG 54

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
            + RK  ++  +S  + ++   +RLD  +  +L   + +L+    VP   I+++ V IA 
Sbjct: 55  TVSRKLTLEWHLSHVIEDR---NRLDKWVYYLLMISLYQLLYLDKVPQHAIVNDAVNIAK 111

Query: 136 DFFYGDEP-KFINAVLDKV 153
           +        KF+NAVL ++
Sbjct: 112 NRGNNRGAEKFVNAVLRQL 130


>gi|307710617|ref|ZP_07647051.1| ribosomal RNA small subunit methyltransferase B [Streptococcus
           mitis SK564]
 gi|307618662|gb|EFN97804.1| ribosomal RNA small subunit methyltransferase B [Streptococcus
           mitis SK564]
          Length = 437

 Score = 65.5 bits (159), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 34/157 (21%), Positives = 61/157 (38%), Gaps = 20/157 (12%)

Query: 18  IARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVM 77
            AR  A+  L           E +   + Y   A  +    S     D      I++G +
Sbjct: 6   TARSIALAVL-----------EDVFVNQAYSNIALNKHLKGSQLSAADKGLVTEIVYGTV 54

Query: 78  DRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDF 137
            RK  ++  +S  + ++    +LD  L  +L     +L     +P   +++E V +A   
Sbjct: 55  ARKLTLEWYLSHFIEDR---DQLDSWLYVLLLMSAYQLRYLDKIPDHAVVNEAVELAKVR 111

Query: 138 FYGDEPKFINAVLDKVSRK-----EEIKRSGCVSAIT 169
             G   K +NAVL ++ R+     + IKR     +I 
Sbjct: 112 KKG-SEKLVNAVLRRILREGWPDIDNIKRKNKRDSIA 147


>gi|254383563|ref|ZP_04998913.1| RNA-binding Sun protein [Streptomyces sp. Mg1]
 gi|194342458|gb|EDX23424.1| RNA-binding Sun protein [Streptomyces sp. Mg1]
          Length = 308

 Score = 65.5 bits (159), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 25/135 (18%), Positives = 53/135 (39%), Gaps = 10/135 (7%)

Query: 20  RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79
           R+ A + L  +D        ++            +   +  +   D      +++G + R
Sbjct: 44  RMLAFEVLRAVDERDAYANLVLPPLLR-------KARQDENFEARDAALATELVYGTLRR 96

Query: 80  KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139
           +   D +I++C+        +D  +  +L  G  +L+    +P    +S  V +A     
Sbjct: 97  QGTYDAVIAACVDR--PLREVDPPVLDVLSLGAHQLLGTR-IPSHAAVSASVELARVVLG 153

Query: 140 GDEPKFINAVLDKVS 154
               KF+NAVL K++
Sbjct: 154 DGRAKFVNAVLRKIA 168


>gi|153003322|ref|YP_001377647.1| NusB/RsmB/TIM44 [Anaeromyxobacter sp. Fw109-5]
 gi|152026895|gb|ABS24663.1| NusB/RsmB/TIM44 [Anaeromyxobacter sp. Fw109-5]
          Length = 439

 Score = 65.5 bits (159), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 26/137 (18%), Positives = 48/137 (35%), Gaps = 13/137 (9%)

Query: 19  ARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMD 78
           AR  A + L ++D  G   +  +          D  L         +      +++G + 
Sbjct: 3   ARQIAFEVLRRVDEGGAYASRAL----------DAALTGAGALDPREAGLATELVYGTLR 52

Query: 79  RKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFF 138
           R   +D  ++           LD      LR G  +L+     P    + E V +     
Sbjct: 53  RSLTLDAALAPHSRR--PVGALDPPARVALRLGAYQLLFMGK-PPHAAVGETVSLVKAVD 109

Query: 139 YGDEPKFINAVLDKVSR 155
           +G    ++NAVL  ++R
Sbjct: 110 HGRAAGYVNAVLRALAR 126


>gi|72161480|ref|YP_289137.1| RNA-binding Sun protein [Thermobifida fusca YX]
 gi|71915212|gb|AAZ55114.1| putative RNA-binding Sun protein [Thermobifida fusca YX]
          Length = 476

 Score = 65.5 bits (159), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 30/152 (19%), Positives = 53/152 (34%), Gaps = 14/152 (9%)

Query: 2   TIQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVY 61
           T +  +     +  R  AR  A   LY +         ++      R             
Sbjct: 12  TRRSPRGSASRTRPRDPARRVAYDVLYAVQTRDAYANLLLPVLLRER-----------GI 60

Query: 62  LHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSV 121
              D      + +G +  +   D ++ +C+    S   +D  +  +LR G  +L+    V
Sbjct: 61  TGRDAGLATELTYGTLRLQGSYDAVLDACVDR--SLRSVDTEVLPLLRMGAHQLLSM-DV 117

Query: 122 PVEVIISEYVCIAHDFFYGDEPKFINAVLDKV 153
           P    +S  V +A         +F+NAVL KV
Sbjct: 118 PPHAAVSSTVDLARRIVGHHRARFVNAVLRKV 149


>gi|18483231|gb|AAL73975.1|AF466201_4 hypothetical protein M3E9.200 [Sorghum bicolor]
          Length = 274

 Score = 65.5 bits (159), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 27/131 (20%), Positives = 51/131 (38%), Gaps = 19/131 (14%)

Query: 34  GCSTTEIISEYETYRFCADTELDVES-----------VYLHVDLEWFRVIIHGVM----D 78
           G    E+ +E E  +  +  E D  +           VY +  L   R ++  V      
Sbjct: 136 GGVPLEVGTEEEAEKLTSQNEKDSANEEDVLSAPPKLVYNNFVLRLSRELLVAVASGWDK 195

Query: 79  RKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFF 138
               ID +I     ++   +R+  +   IL   + E+      P +V+I+E V +A  F 
Sbjct: 196 HVDIIDKIIPQAWKDE-PVARI--LELCILHIAMAEMT-SKGTPHKVVINEAVDLAKRFC 251

Query: 139 YGDEPKFINAV 149
            G  P+ ++ +
Sbjct: 252 DGGAPRVMSGI 262


>gi|307150080|ref|YP_003885464.1| sun protein [Cyanothece sp. PCC 7822]
 gi|306980308|gb|ADN12189.1| sun protein [Cyanothece sp. PCC 7822]
          Length = 450

 Score = 65.5 bits (159), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 25/137 (18%), Positives = 52/137 (37%), Gaps = 16/137 (11%)

Query: 20  RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79
           R  AV           +    I   + Y   A  +   ++    +D      +++G++ R
Sbjct: 8   RQLAV-----------TILRDIYRKDAYTDIALDQGLKQAQLKSLDRGLVTELVYGIVRR 56

Query: 80  KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139
            + +D LI+    +  +       L  IL+ G+ +L     +PV   ++  V +A     
Sbjct: 57  VRTLDQLITQLGKKTATQQ--PPDLRIILQIGLYQLRYLDQIPVSAAVNTSVELAKKNQL 114

Query: 140 GDEPKFINAVL---DKV 153
           G     +N +L   D++
Sbjct: 115 GKLSGVVNGILRQYDRI 131


>gi|229552470|ref|ZP_04441195.1| RNA methyltransferase [Lactobacillus rhamnosus LMS2-1]
 gi|258539841|ref|YP_003174340.1| tRNA and rRNA cytosine-C5-methytransferase (sun protein)
           [Lactobacillus rhamnosus Lc 705]
 gi|229314207|gb|EEN80180.1| RNA methyltransferase [Lactobacillus rhamnosus LMS2-1]
 gi|257151517|emb|CAR90489.1| tRNA and rRNA cytosine-C5-methytransferase (sun protein)
           [Lactobacillus rhamnosus Lc 705]
          Length = 446

 Score = 65.5 bits (159), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 31/150 (20%), Positives = 57/150 (38%), Gaps = 21/150 (14%)

Query: 20  RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79
           RL AVQ L          T ++ +        D  +    +    D      I++GV+  
Sbjct: 7   RLLAVQTL----------TRVMGKGGYSNLTLDHVITKYQLDSR-DAGLLTNIVYGVIQH 55

Query: 80  KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139
           +  +D L++  +  +    +LD  +  +L+  V +L     VP   +  +   IA    +
Sbjct: 56  QLTLDYLLAPFVKTR----QLDTWVRCLLQTSVYQLQYLDKVPARAVFFDSTEIAKKLGH 111

Query: 140 GDEPKFINAVLDKVSRKEEIKRSGCVSAIT 169
               KF+  VL       + +RSG    +T
Sbjct: 112 QGVAKFVTGVL------RQAQRSGYPDPMT 135


>gi|293402263|ref|ZP_06646401.1| ribosomal RNA small subunit methyltransferase B
           [Erysipelotrichaceae bacterium 5_2_54FAA]
 gi|291304370|gb|EFE45621.1| ribosomal RNA small subunit methyltransferase B
           [Erysipelotrichaceae bacterium 5_2_54FAA]
          Length = 415

 Score = 65.5 bits (159), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 21/101 (20%), Positives = 39/101 (38%), Gaps = 11/101 (10%)

Query: 63  HVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWS--FSRLDMILCSILR-AGVLELIECH 119
           H D      I++G +   +     +      +W     +L     ++L      +L    
Sbjct: 34  HKDKGLITTIVYGTLQNYR-----LCRY---QWEDMVQKLPKEETAVLLDMSAYQLFYMD 85

Query: 120 SVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIK 160
            +P   II+E V IA       +   +NAVL KV ++ + +
Sbjct: 86  KLPAYAIINEAVEIAKKHGGKKQGALVNAVLHKVMQRGQRE 126


>gi|308234576|ref|ZP_07665313.1| NusB/RsmB/TIM44 [Atopobium vaginae DSM 15829]
 gi|328944365|ref|ZP_08241828.1| tRNA and rRNA cytosine-C5-methylase [Atopobium vaginae DSM 15829]
 gi|327491080|gb|EGF22856.1| tRNA and rRNA cytosine-C5-methylase [Atopobium vaginae DSM 15829]
          Length = 537

 Score = 65.5 bits (159), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 22/136 (16%), Positives = 52/136 (38%), Gaps = 16/136 (11%)

Query: 19  ARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMD 78
           +R  A +AL  +        + +  ++ +      E             + + ++ GV+ 
Sbjct: 9   SRTVAFKALCALRKNTTYAQDFLKHFDAFCALLQDE-----------KSFVQHVVCGVIS 57

Query: 79  RKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFF 138
            +  +D +++  +     F+     +   LR    EL+   +    V+ S+YV +     
Sbjct: 58  SQSMVDKILAQYVKR---FAHQPYKVLICLRMATYELVYRQTAAYAVV-SQYVELVR-LV 112

Query: 139 YGDEPKFINAVLDKVS 154
                 F+NAVL +++
Sbjct: 113 DKRGASFVNAVLHRIA 128


>gi|329574298|gb|EGG55872.1| putative transcription antitermination protein NusB [Enterococcus
           faecalis TX1467]
          Length = 92

 Score = 65.5 bits (159), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 24/93 (25%), Positives = 38/93 (40%), Gaps = 3/93 (3%)

Query: 11  KLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFR 70
           K    R   R  A+QAL+ +D     T +   +   Y    D    V      +   +  
Sbjct: 3   KTELTRHEIREKALQALFPLDFNADLTKQ---DAIDYALAYDNREIVSEDGEDLVPTYLD 59

Query: 71  VIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMI 103
           +++ GV  RK  +D +I++ L   WS  RL  I
Sbjct: 60  LLVGGVCSRKAELDEVITNHLGNNWSMQRLAKI 92


>gi|75910625|ref|YP_324921.1| Fmu, rRNA SAM-dependent methyltransferase [Anabaena variabilis ATCC
           29413]
 gi|75704350|gb|ABA24026.1| Fmu, rRNA SAM-dependent methyltransferase [Anabaena variabilis ATCC
           29413]
          Length = 449

 Score = 65.5 bits (159), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 27/146 (18%), Positives = 55/146 (37%), Gaps = 14/146 (9%)

Query: 17  GIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGV 76
             +R  A  AL   D+   + T++  +              ++    +D      +++G 
Sbjct: 2   TNSRQIAFIAL--RDVHKGAYTDVALDRAL----------QKANLSDIDRRLVTELLYGS 49

Query: 77  MDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHD 136
           + R++ +D +I     +K         L SIL  G+ +L     +P    ++  V +A D
Sbjct: 50  VRRQRTLDFIIDQLAKKKSHQQ--PTELRSILHLGLYQLRYQERIPASAAVNTTVELAKD 107

Query: 137 FFYGDEPKFINAVLDKVSRKEEIKRS 162
             +     F+N +L +  R  E    
Sbjct: 108 NGFAGLTGFVNGLLRQYIRLAEASPD 133


>gi|282901368|ref|ZP_06309293.1| Fmu, rRNA SAM-dependent methyltransferase [Cylindrospermopsis
           raciborskii CS-505]
 gi|281193647|gb|EFA68619.1| Fmu, rRNA SAM-dependent methyltransferase [Cylindrospermopsis
           raciborskii CS-505]
          Length = 446

 Score = 65.5 bits (159), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 26/139 (18%), Positives = 52/139 (37%), Gaps = 14/139 (10%)

Query: 20  RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79
           R  A  AL   ++   +  +I  +   ++F               D      +++G + R
Sbjct: 7   RQIAFTAL--REVHRGAYADIAIDRTLHKF----------KLSDHDRRLMTELVYGSVRR 54

Query: 80  KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139
           ++ +D +I     +K         L  IL  G+ +L     +PV   ++  V +A +  +
Sbjct: 55  QRSLDAIIDQIADKKSPQQ--PRDLRCILHLGLYQLRYQQKIPVSAAVNTTVQLAKENGF 112

Query: 140 GDEPKFINAVLDKVSRKEE 158
                F+N  L +  R  E
Sbjct: 113 PGLTGFVNGFLRQYIRLLE 131


>gi|323489537|ref|ZP_08094764.1| ribosomal RNA small subunit methyltransferase B [Planococcus
           donghaensis MPA1U2]
 gi|323396668|gb|EGA89487.1| ribosomal RNA small subunit methyltransferase B [Planococcus
           donghaensis MPA1U2]
          Length = 450

 Score = 65.5 bits (159), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 18/88 (20%), Positives = 36/88 (40%), Gaps = 5/88 (5%)

Query: 68  WFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVII 127
               I +G +  +  +D  +   L  K     ++  +  +LR  + +++    +P   ++
Sbjct: 48  LLTEITYGTLQHQMTLDYYLEPYLKGK-----IESWVKILLRLSLYQIVYLDRIPAHAVV 102

Query: 128 SEYVCIAHDFFYGDEPKFINAVLDKVSR 155
            E V IA    +G     +N VL  V R
Sbjct: 103 HEAVEIAKRRGHGGVASVVNGVLRSVQR 130


>gi|331697235|ref|YP_004333474.1| Fmu (Sun) domain-containing protein [Pseudonocardia dioxanivorans
           CB1190]
 gi|326951924|gb|AEA25621.1| Fmu (Sun) domain protein [Pseudonocardia dioxanivorans CB1190]
          Length = 482

 Score = 65.1 bits (158), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 23/139 (16%), Positives = 51/139 (36%), Gaps = 3/139 (2%)

Query: 32  IIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCL 91
           +        + E + Y   A   +         D      + +G +     +D ++++C 
Sbjct: 40  VAAHELLTAVRERDAYANLAMPAILRRHRLRDRDAALATELGYGTLRALGLLDAVVAACA 99

Query: 92  TEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLD 151
                  R++  L   LR G  +L+    +P    +   V +  D        F+NA+L 
Sbjct: 100 DR--PLHRIEPPLVDALRLGAYQLL-RTRIPAHAAVDTIVDLVRDRAGSRSAGFVNAILR 156

Query: 152 KVSRKEEIKRSGCVSAITQ 170
           KV+ ++E   +  ++   +
Sbjct: 157 KVAEQDEAAWTAQLAPSVE 175


>gi|226323830|ref|ZP_03799348.1| hypothetical protein COPCOM_01605 [Coprococcus comes ATCC 27758]
 gi|225208014|gb|EEG90368.1| hypothetical protein COPCOM_01605 [Coprococcus comes ATCC 27758]
          Length = 357

 Score = 65.1 bits (158), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 14/59 (23%), Positives = 28/59 (47%)

Query: 100 LDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEE 158
           +  ++ +ILR  V ++     VP     +E V +A    + +   F+N VL  ++R  +
Sbjct: 1   MKPVIRNILRCAVYQIKYMDQVPDSAACNEAVNLAIRKGFKNLRGFVNGVLRNIARNID 59


>gi|323350301|ref|ZP_08085966.1| RNA methyltransferase Sun [Streptococcus sanguinis VMC66]
 gi|322123486|gb|EFX95157.1| RNA methyltransferase Sun [Streptococcus sanguinis VMC66]
          Length = 438

 Score = 65.1 bits (158), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 33/145 (22%), Positives = 59/145 (40%), Gaps = 15/145 (10%)

Query: 12  LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71
           +  ++  AR  A++ L           E+  E   Y   A      +S     D      
Sbjct: 1   MESKQKTARWQALEIL----------EEVFEE-GAYSNIALNRALSQSKLSQADKGLVTE 49

Query: 72  IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
           +++G + RK  ++  +S  L E     +LD  L  +L   + +++    +P    + E V
Sbjct: 50  LVYGTVARKITLEWYLS-HLIEDR--DKLDNWLYILLMLSLYQMLYLDKIPQHATVHEAV 106

Query: 132 CIAHDFFYGDEPKFINAVLDKVSRK 156
            IA     G   KFINA+L ++ R+
Sbjct: 107 EIAKIRKRG-SEKFINALLRRIERE 130


>gi|270293272|ref|ZP_06199483.1| sun protein [Streptococcus sp. M143]
 gi|270279251|gb|EFA25097.1| sun protein [Streptococcus sp. M143]
          Length = 437

 Score = 65.1 bits (158), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 27/120 (22%), Positives = 51/120 (42%), Gaps = 4/120 (3%)

Query: 37  TTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWS 96
             E +  ++ Y   A  +    S     D      I++G + RK  ++  +S  + ++  
Sbjct: 14  VLEDVFIHQAYSNIALNKHLKGSRLSVADKGLVTEIVYGTVARKLTLEWYLSHFIEDR-- 71

Query: 97  FSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRK 156
             +LD  L  +L     +L     VP   +++E V +A     G   K +NAVL ++ R+
Sbjct: 72  -DKLDNWLYILLLLSAYQLRYLDKVPNHAVVNEAVELAKARKKG-SEKLVNAVLRRILRE 129


>gi|307706106|ref|ZP_07642925.1| ribosomal RNA small subunit methyltransferase B [Streptococcus
           mitis SK321]
 gi|307618506|gb|EFN97654.1| ribosomal RNA small subunit methyltransferase B [Streptococcus
           mitis SK321]
          Length = 437

 Score = 65.1 bits (158), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 25/120 (20%), Positives = 50/120 (41%), Gaps = 4/120 (3%)

Query: 37  TTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWS 96
             E +   + Y   A  +    S     D      +++G + RK  ++  +S  + ++  
Sbjct: 14  VLEDVFINQAYSNIALNKHLKGSQLSVADKGLATELVYGTVARKLTLEWYLSHFIEDR-- 71

Query: 97  FSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRK 156
             +LD  L  +L     +L     +P   +++E V +A     G   K +NAVL ++ R+
Sbjct: 72  -DQLDSWLYVLLLMSAYQLRYLDKIPDHAVVNEAVELAKVRKKG-SEKLVNAVLRRILRE 129


>gi|38233907|ref|NP_939674.1| hypothetical protein DIP1321 [Corynebacterium diphtheriae NCTC
           13129]
 gi|38200168|emb|CAE49849.1| Conserved hypothetical protein [Corynebacterium diphtheriae]
          Length = 485

 Score = 65.1 bits (158), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 26/123 (21%), Positives = 48/123 (39%), Gaps = 19/123 (15%)

Query: 58  ESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIE 117
           +S     D  +   + +G +  +  +D +I+ C + +     L   + + LR G  +L+ 
Sbjct: 78  QSKLSGRDAAFATELTYGTLRTQGVLDTVIAECSSRE--LEALKPEVRAALRLGAYQLLY 135

Query: 118 -----CHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRK------EEIKRSGCVS 166
                  +V   V I E +             F+N VL  +SR       E++  SG V 
Sbjct: 136 TRVGAHAAVDTTVRIMEAI------GQDRAKGFVNGVLRTISRTSPQSWIEKLTPSGEVE 189

Query: 167 AIT 169
           +I 
Sbjct: 190 SIA 192


>gi|114566754|ref|YP_753908.1| hypothetical protein Swol_1228 [Syntrophomonas wolfei subsp. wolfei
           str. Goettingen]
 gi|114337689|gb|ABI68537.1| conserved hypothetical protein [Syntrophomonas wolfei subsp. wolfei
           str. Goettingen]
          Length = 456

 Score = 65.1 bits (158), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 29/142 (20%), Positives = 55/142 (38%), Gaps = 13/142 (9%)

Query: 17  GIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGV 76
             AR+ A + +Y+           + E   +   A  +    S     D      I++G 
Sbjct: 10  NKARIMAAEIVYE-----------VMERGAFANLALAKALRNSDLSAADRHLLTEIVNGT 58

Query: 77  MDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHD 136
           +   +H+D ++   L       + +  L SILR  + +L+    VP   ++++ V I+  
Sbjct: 59  VRMIKHLDWVLELFLHS--PIKKQNPYLLSILRTALYQLMFLAKVPDYALVNDAVEISRQ 116

Query: 137 FFYGDEPKFINAVLDKVSRKEE 158
                     NAVL  + RK +
Sbjct: 117 KMGAKMAGVSNAVLRNIIRKLD 138


>gi|168483273|ref|ZP_02708225.1| ribosomal RNA small subunit methyltransferase B [Streptococcus
           pneumoniae CDC1873-00]
 gi|172043312|gb|EDT51358.1| ribosomal RNA small subunit methyltransferase B [Streptococcus
           pneumoniae CDC1873-00]
          Length = 437

 Score = 65.1 bits (158), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 28/139 (20%), Positives = 55/139 (39%), Gaps = 15/139 (10%)

Query: 18  IARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVM 77
            AR  A+  L           E +   + Y   A  +    S     D      +++G +
Sbjct: 6   TARSLALAVL-----------EDVFVNQAYSNIALNKHLKGSQLSAADKGLVTELVYGTV 54

Query: 78  DRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDF 137
            RK  ++  +S  + ++    +LD  L  +L     +L   + +P   +++E V +A   
Sbjct: 55  ARKLTLEWYLSHFIEDR---DQLDSWLYVLLLMSAYQLRYLNKIPDHAVVNEAVELAK-L 110

Query: 138 FYGDEPKFINAVLDKVSRK 156
                 K +NAVL ++ R+
Sbjct: 111 RKKGSEKLVNAVLRRILRE 129


>gi|227524617|ref|ZP_03954666.1| rRNA SAM-dependent methyltransferase RmsB [Lactobacillus hilgardii
           ATCC 8290]
 gi|227088292|gb|EEI23604.1| rRNA SAM-dependent methyltransferase RmsB [Lactobacillus hilgardii
           ATCC 8290]
          Length = 444

 Score = 65.1 bits (158), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 20/114 (17%), Positives = 44/114 (38%), Gaps = 4/114 (3%)

Query: 57  VESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELI 116
             +    VD   F  I++GV+  +  ++  +   L +       D +   +L   + +L 
Sbjct: 34  ESTSMSDVDKALFTNIVYGVIQHRMTLEYQLVPFLKDSEKTE--DWV-KELLYTAMYQLE 90

Query: 117 ECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRSGCVSAITQ 170
               VP   I  E + IA    +    +F+  +L ++ RK  ++    +    +
Sbjct: 91  YLDRVPKRAIFDESIKIAKSMGHDGTRRFVTGILHQMDRKG-VREPDKIKDPVK 143


>gi|289168457|ref|YP_003446726.1| rRNA-specific 5-methylcytidine transferase [Streptococcus mitis B6]
 gi|288908024|emb|CBJ22864.1| rRNA-specific 5-methylcytidine transferase [Streptococcus mitis B6]
          Length = 438

 Score = 65.1 bits (158), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 29/139 (20%), Positives = 56/139 (40%), Gaps = 15/139 (10%)

Query: 18  IARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVM 77
            AR  A+  L           E +   + Y   A  +    S     D      +++G +
Sbjct: 7   TARSLALAVL-----------EDVFINQAYSNIALNKHLKGSQLSVADKGLVTELVYGTV 55

Query: 78  DRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDF 137
            RK  ++  +S  + ++    +LD  L  +L     +L   + +P   +++E V +A   
Sbjct: 56  ARKLTLEWYLSHFIEDR---DQLDSWLYVLLLMSAYQLRYLNKIPDHAVVNEAVELAKVR 112

Query: 138 FYGDEPKFINAVLDKVSRK 156
             G   K +NAVL ++ R+
Sbjct: 113 KKG-SEKLVNAVLRRILRE 130


>gi|17228315|ref|NP_484863.1| sun protein [Nostoc sp. PCC 7120]
 gi|17130165|dbj|BAB72777.1| sun protein [Nostoc sp. PCC 7120]
          Length = 449

 Score = 65.1 bits (158), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 27/143 (18%), Positives = 55/143 (38%), Gaps = 14/143 (9%)

Query: 17  GIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGV 76
             +R  A  AL   D+   + T++  +              ++    +D      +++G 
Sbjct: 2   TNSRQIAFIAL--RDVHKGAYTDVALDRAL----------QKANLSDIDRRLVTELLYGS 49

Query: 77  MDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHD 136
           + R++ +D +I     +K         L SIL  G+ +L     +P    ++  V +A D
Sbjct: 50  VRRQRTLDFIIDQLAKKKSHQQ--PTELRSILHLGLYQLRYQERIPASAAVNTTVELAKD 107

Query: 137 FFYGDEPKFINAVLDKVSRKEEI 159
             +     F+N +L +  R  E 
Sbjct: 108 NGFAGLTGFVNGLLRQYIRLAEA 130


>gi|325294320|ref|YP_004280834.1| sun protein [Desulfurobacterium thermolithotrophum DSM 11699]
 gi|325064768|gb|ADY72775.1| sun protein [Desulfurobacterium thermolithotrophum DSM 11699]
          Length = 442

 Score = 64.7 bits (157), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 19/111 (17%), Positives = 40/111 (36%), Gaps = 3/111 (2%)

Query: 39  EIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFS 98
           +I++ +E  +   +      S     D  + R I+ G +   + +D  I     +     
Sbjct: 12  KILNRFEKDKKLKEHIEKFTSRLHPQDRAFIREIVSGTVRFLRLLDFSIEKATGKN--LK 69

Query: 99  RLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAV 149
           R    + + LR    ++    +VP    ++E V             F+NA+
Sbjct: 70  RQKNTVRNSLRVIAYQI-FFTNVPPYAALNETVEAVKKILGKKAAGFVNAI 119


>gi|113474586|ref|YP_720647.1| sun protein [Trichodesmium erythraeum IMS101]
 gi|110165634|gb|ABG50174.1| sun protein [Trichodesmium erythraeum IMS101]
          Length = 443

 Score = 64.7 bits (157), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 22/121 (18%), Positives = 47/121 (38%), Gaps = 5/121 (4%)

Query: 40  IISEYETYRFCADTELD---VESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWS 96
           I+ E    +   D  LD    ++  +  +      +++G + R++ +D +I     +K  
Sbjct: 12  ILQEIYRKQVFTDVALDRHLKKNDLIDANRRLVTELVYGCVRRQRSLDAIIDQLAKKKSP 71

Query: 97  FSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRK 156
                  L  IL  G+ +L     +P    +   V +A    +     F+N +L +  R+
Sbjct: 72  QQH--PYLRIILHIGLYQLSYLEQIPESAAVDTTVELAKQNKFAKLAGFVNGLLREYIRQ 129

Query: 157 E 157
            
Sbjct: 130 N 130


>gi|325688781|gb|EGD30790.1| RNA methyltransferase Sun [Streptococcus sanguinis SK115]
          Length = 438

 Score = 64.7 bits (157), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 33/145 (22%), Positives = 58/145 (40%), Gaps = 15/145 (10%)

Query: 12  LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71
           +  +   AR  A++ L           E+  E   Y   A      +S     D      
Sbjct: 1   MESKHKTARWQALEIL----------EEVFEE-GAYSNIALNRALSQSPLSQADKGLVTE 49

Query: 72  IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
           +++G + RK  ++  +S  L E     +LD  L  +L   + +++    +P    + E V
Sbjct: 50  LVYGTVARKITLEWYLS-HLIEDR--DKLDNWLYILLMLSLYQMLYLDKIPQHATVHEAV 106

Query: 132 CIAHDFFYGDEPKFINAVLDKVSRK 156
            IA     G   KFINA+L ++ R+
Sbjct: 107 EIAKIRKRG-SEKFINALLRRIERE 130


>gi|296877028|ref|ZP_06901070.1| ribosomal RNA small subunit methyltransferase B [Streptococcus
           parasanguinis ATCC 15912]
 gi|296431972|gb|EFH17777.1| ribosomal RNA small subunit methyltransferase B [Streptococcus
           parasanguinis ATCC 15912]
          Length = 437

 Score = 64.7 bits (157), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 32/138 (23%), Positives = 61/138 (44%), Gaps = 15/138 (10%)

Query: 19  ARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMD 78
           AR   V+ L           E + E+  Y   A  +    S     D  +   +++G + 
Sbjct: 8   AREQIVRVL-----------EEVFEHGAYSNIALKKTLEHSQLSDKDRSFVTEVVYGTVA 56

Query: 79  RKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFF 138
           RK  ++  +S  + ++   ++LD  +  +L   + +L+    +P   I++E V IA    
Sbjct: 57  RKITLEWYLSHVIEDR---TKLDPWVYYLLMMSLYQLVYLDRIPDHAIVNEAVRIAKSRK 113

Query: 139 YGDEPKFINAVLDKVSRK 156
            G   KF+NA+L K+ R+
Sbjct: 114 EG-SEKFVNAILRKLLRE 130


>gi|331703221|ref|YP_004399908.1| Sun family protein [Mycoplasma mycoides subsp. capri LC str. 95010]
 gi|328801776|emb|CBW53929.1| Sun family protein [Mycoplasma mycoides subsp. capri LC str. 95010]
          Length = 423

 Score = 64.7 bits (157), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 25/95 (26%), Positives = 48/95 (50%), Gaps = 7/95 (7%)

Query: 65  DLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILC-SILRAGVLELIECHSVPV 123
           D ++   ++HGV+  K H+D L++  +  K +      I    IL   + ++I  +S+P 
Sbjct: 37  DKDFVFNLVHGVISNKIHLDYLLAKLIDVKKT-----SIDLQIILLISLYQMIYLNSIPN 91

Query: 124 EVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEE 158
             I++E V +        +  FINA+L+K  R ++
Sbjct: 92  YAIVNESVNLIKT-TSQKQANFINAILNKFLRFKD 125


>gi|169832803|ref|YP_001695109.1| ribosomal RNA small subunit methyltransferase B [Streptococcus
           pneumoniae Hungary19A-6]
 gi|168995305|gb|ACA35917.1| ribosomal RNA small subunit methyltransferase B [Streptococcus
           pneumoniae Hungary19A-6]
          Length = 437

 Score = 64.7 bits (157), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 28/139 (20%), Positives = 55/139 (39%), Gaps = 15/139 (10%)

Query: 18  IARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVM 77
            AR  A+  L           E +   + Y   A  +    S  L  D      +++G +
Sbjct: 6   TARSLALAVL-----------EDVFVNQAYSNIALNKHLKGSQLLAADKGLVTELVYGTV 54

Query: 78  DRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDF 137
            RK  ++  +S  + ++    +LD  L  +L     +L     +P   +++E V +A   
Sbjct: 55  ARKLTLEWYLSHFIEDR---DQLDSWLYVLLLMSAYQLRYLDKIPDHAVVNEAVELAK-L 110

Query: 138 FYGDEPKFINAVLDKVSRK 156
                 K +NA+L ++ R+
Sbjct: 111 RKKGSEKLVNALLRRILRE 129


>gi|119512103|ref|ZP_01631196.1| Fmu, rRNA SAM-dependent methyltransferase [Nodularia spumigena
           CCY9414]
 gi|119463261|gb|EAW44205.1| Fmu, rRNA SAM-dependent methyltransferase [Nodularia spumigena
           CCY9414]
          Length = 449

 Score = 64.7 bits (157), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 21/91 (23%), Positives = 40/91 (43%), Gaps = 2/91 (2%)

Query: 65  DLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVE 124
           D      +++G + R++ +D LI    T+K         L SIL  G+ +L     +P  
Sbjct: 38  DRRLLTELVYGSVRRQRTLDTLIDQLATKKSHQQ--PKDLRSILHLGLYQLRYQERIPAS 95

Query: 125 VIISEYVCIAHDFFYGDEPKFINAVLDKVSR 155
             ++  V +A +  +     F+N +L +  R
Sbjct: 96  AAVNTTVQLAKENGFSGLTGFVNGLLRQYIR 126


>gi|15807162|ref|NP_295891.1| sun protein [Deinococcus radiodurans R1]
 gi|6459968|gb|AAF11717.1|AE002050_3 sun protein, putative [Deinococcus radiodurans R1]
          Length = 439

 Score = 64.7 bits (157), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 33/157 (21%), Positives = 60/157 (38%), Gaps = 22/157 (14%)

Query: 1   MTIQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESV 60
           MT   +++    +     AR  AV+ L            +++  E +   A       + 
Sbjct: 24  MTRPPDRRPQPFNP----AREVAVRVL----------IRVLAG-EGFAATALDSALQSAR 68

Query: 61  YLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHS 120
               D      I++G +     +D  +S  LT K           ++L AG  E +    
Sbjct: 69  LPGRDAGLATHIVYGTLRHFPSLDAALSPLLTGKTH-----PKARALLLAGAFEKLH-LD 122

Query: 121 VPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKE 157
            P+  +++EYV +A D      P  +NAVL +V + +
Sbjct: 123 TPLHAVVNEYVNLARD-ARLAPPGLVNAVLRRVEKAD 158


>gi|116492597|ref|YP_804332.1| tRNA and rRNA cytosine-C5-methylase [Pediococcus pentosaceus ATCC
           25745]
 gi|116102747|gb|ABJ67890.1| tRNA and rRNA cytosine-C5-methylase [Pediococcus pentosaceus ATCC
           25745]
          Length = 444

 Score = 64.7 bits (157), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 29/152 (19%), Positives = 55/152 (36%), Gaps = 25/152 (16%)

Query: 12  LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71
           ++++   AR  AV  L           E I E        + ++   S  + +D      
Sbjct: 1   MTNQNNSARNLAVDIL-----------EKIDEGSFSNIQLNQDIK-SSSLIDIDKNLLTE 48

Query: 72  IIHGVMDRKQHIDLLISSCL-----TEKWSFSRLDMILCSILRAGVLELIECHSVPVEVI 126
           I++GV+  +  +D  ++  +     T +W          ++LR  V ++     VP   I
Sbjct: 49  IVYGVLQHRLTLDFYLADYIRKPEMTPRWVI--------NLLRTAVFQMEFLDRVPDFAI 100

Query: 127 ISEYVCIAHDFFYGDEPKFINAVLDKVSRKEE 158
            +E + IA         K +  VL    R  +
Sbjct: 101 FNESIEIAKLRGNDGIRKMVTGVLRSYQRNGK 132


>gi|322391001|ref|ZP_08064506.1| RNA methyltransferase Sun [Streptococcus parasanguinis ATCC 903]
 gi|321142305|gb|EFX37778.1| RNA methyltransferase Sun [Streptococcus parasanguinis ATCC 903]
          Length = 437

 Score = 64.7 bits (157), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 32/138 (23%), Positives = 60/138 (43%), Gaps = 15/138 (10%)

Query: 19  ARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMD 78
           AR   V+ L           E + E   Y   A  +    S     D  +   +++G + 
Sbjct: 8   AREQIVRVL-----------EEVFEQGAYSNIALNQALEHSQLSDKDRSFVTEVVYGTVA 56

Query: 79  RKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFF 138
           RK  ++  ++  + ++   ++LD  L  +L   + +L+    +P   I++E V IA    
Sbjct: 57  RKITLEWYLAHVIEDR---TKLDPWLYYLLMMSLYQLVYLDRIPDHAIVNEAVRIAKRRK 113

Query: 139 YGDEPKFINAVLDKVSRK 156
            G   KF+NA+L K+ R+
Sbjct: 114 EG-SEKFVNAILRKLLRE 130


>gi|307704312|ref|ZP_07641230.1| ribosomal RNA small subunit methyltransferase B [Streptococcus
           mitis SK597]
 gi|307622148|gb|EFO01167.1| ribosomal RNA small subunit methyltransferase B [Streptococcus
           mitis SK597]
          Length = 437

 Score = 64.7 bits (157), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 29/139 (20%), Positives = 56/139 (40%), Gaps = 15/139 (10%)

Query: 18  IARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVM 77
            AR  A+  L           E +   + Y   A  +    S     D      +++G +
Sbjct: 6   TARSLALAVL-----------EDVFINQAYSNIALNKHLKGSQLSVADKGLVTELVYGTV 54

Query: 78  DRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDF 137
            RK  ++  +S  + ++    +LD  L  +L     +L   + +P   +++E V +A   
Sbjct: 55  ARKLTLEWYLSHFIEDR---DQLDSWLYVLLLMSAYQLRYLNKIPDHAVVNEAVELAKVR 111

Query: 138 FYGDEPKFINAVLDKVSRK 156
             G   K +NAVL ++ R+
Sbjct: 112 KKG-SEKLVNAVLRRILRE 129


>gi|225861556|ref|YP_002743065.1| ribosomal RNA small subunit methyltransferase B [Streptococcus
           pneumoniae Taiwan19F-14]
 gi|298230282|ref|ZP_06963963.1| ribosomal RNA small subunit methyltransferase B [Streptococcus
           pneumoniae str. Canada MDR_19F]
 gi|298254901|ref|ZP_06978487.1| ribosomal RNA small subunit methyltransferase B [Streptococcus
           pneumoniae str. Canada MDR_19A]
 gi|298503480|ref|YP_003725420.1| rRNA SAM-dependent methyltransferase RmsB [Streptococcus pneumoniae
           TCH8431/19A]
 gi|225726400|gb|ACO22251.1| ribosomal RNA small subunit methyltransferase B [Streptococcus
           pneumoniae Taiwan19F-14]
 gi|298239075|gb|ADI70206.1| rRNA SAM-dependent methyltransferase RmsB [Streptococcus pneumoniae
           TCH8431/19A]
 gi|327389919|gb|EGE88264.1| ribosomal RNA small subunit methyltransferase B [Streptococcus
           pneumoniae GA04375]
 gi|332200294|gb|EGJ14367.1| ribosomal RNA small subunit methyltransferase B [Streptococcus
           pneumoniae GA47368]
          Length = 437

 Score = 64.7 bits (157), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 28/139 (20%), Positives = 55/139 (39%), Gaps = 15/139 (10%)

Query: 18  IARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVM 77
            AR  A+  L           E +   + Y   A  +    S  L  D      +++G +
Sbjct: 6   TARSLALAVL-----------EDVFVNQAYSNIALNKHLKGSQLLAADKGLVTELVYGTV 54

Query: 78  DRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDF 137
            RK  ++  +S  + ++    +LD  L  +L     +L     +P   +++E V +A   
Sbjct: 55  ARKLTLEWYLSHFIEDR---DQLDSWLYVLLLMSAYQLRYLDKIPDHAVVNEAVELAK-L 110

Query: 138 FYGDEPKFINAVLDKVSRK 156
                 K +NA+L ++ R+
Sbjct: 111 RKKGSEKLVNALLRRILRE 129


>gi|297588339|ref|ZP_06946982.1| probable rRNA methylase [Finegoldia magna ATCC 53516]
 gi|297573712|gb|EFH92433.1| probable rRNA methylase [Finegoldia magna ATCC 53516]
          Length = 423

 Score = 64.7 bits (157), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 23/97 (23%), Positives = 46/97 (47%), Gaps = 5/97 (5%)

Query: 59  SVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIEC 118
                 D+ + +  +   ++ +  ID +IS C       ++LD I+  ILR    E++  
Sbjct: 31  GDLDKRDIAYIKRCVFTEIENRFFIDYVISKC--SDLELNKLDKIVLEILRMATTEILFM 88

Query: 119 HSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSR 155
            +    V+  E V +A++  +  +  ++NAVL +V R
Sbjct: 89  KTADYAVV-DEAVELANNLTHYKD--YVNAVLREVCR 122


>gi|326693796|ref|ZP_08230801.1| 16S rRNA methyltransferase B [Leuconostoc argentinum KCTC 3773]
          Length = 452

 Score = 64.7 bits (157), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 26/162 (16%), Positives = 63/162 (38%), Gaps = 19/162 (11%)

Query: 12  LSHRRGIA---RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEW 68
           +S +R  +   R+ AVQ L               +   Y      ++  +      D   
Sbjct: 1   MSDKRVYSNNPRVLAVQTL------------AKIKNGAYSNLQLNQVIKQHQLGEADKRL 48

Query: 69  FRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIIS 128
              +++GV+  +   +  ++  + +K    +L+  +  +L   + ++   + +P   I +
Sbjct: 49  LTTLVYGVIQHRLTFEYWLAPFVGDK----KLNPWVRELLYTALFQMQYLNKIPQHAIFN 104

Query: 129 EYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRSGCVSAITQ 170
           E + +A    +    KF+ A+L  +SR+     +     IT+
Sbjct: 105 ESIEVAKILGHVGTAKFVTAILHNISRQGLPDTAAIADPITR 146


>gi|227513475|ref|ZP_03943524.1| rRNA SAM-dependent methyltransferase RmsB [Lactobacillus buchneri
           ATCC 11577]
 gi|227083348|gb|EEI18660.1| rRNA SAM-dependent methyltransferase RmsB [Lactobacillus buchneri
           ATCC 11577]
          Length = 444

 Score = 64.7 bits (157), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 22/119 (18%), Positives = 45/119 (37%), Gaps = 14/119 (11%)

Query: 57  VESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCL-----TEKWSFSRLDMILCSILRAG 111
             +    VD   F  I++GV+  +  ++  +   L     TE W        +  +L   
Sbjct: 34  ESTSMSDVDKALFTNIVYGVIQHRMTLEYQLVPFLKDPEKTEDW--------VKELLYTA 85

Query: 112 VLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRSGCVSAITQ 170
           + +L     VP   I  E + IA    +    +F+  +L ++ RK  ++    +    +
Sbjct: 86  MYQLEYLDRVPKRAIFDESIKIAKSMGHDGTRRFVTGILHQMDRKG-VREPDKIKDPVK 143


>gi|83319809|ref|YP_424196.1| rRNA methyltransferase RsmB (sun protein), putative [Mycoplasma
           capricolum subsp. capricolum ATCC 27343]
 gi|83283695|gb|ABC01627.1| rRNA methyltransferase RsmB (sun protein), putative [Mycoplasma
           capricolum subsp. capricolum ATCC 27343]
          Length = 428

 Score = 64.7 bits (157), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 25/95 (26%), Positives = 48/95 (50%), Gaps = 7/95 (7%)

Query: 65  DLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCS-ILRAGVLELIECHSVPV 123
           D ++   ++HGV+  K H+D L++  +  K +      I    IL   + ++I  +S+P 
Sbjct: 46  DKDFVFNLVHGVISNKIHLDYLLAKLIDVKKT-----SIDLQVILLISLYQMIYLNSIPN 100

Query: 124 EVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEE 158
             I++E V +        +  FINA+L+K  R ++
Sbjct: 101 YAIVNESVNLIKT-TSQKQANFINAILNKFLRFKD 134


>gi|158338705|ref|YP_001519882.1| ribosomal RNA small subunit methyltransferase B [Acaryochloris
           marina MBIC11017]
 gi|158308946|gb|ABW30563.1| ribosomal RNA small subunit methyltransferase B [Acaryochloris
           marina MBIC11017]
          Length = 443

 Score = 64.7 bits (157), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 18/94 (19%), Positives = 37/94 (39%), Gaps = 2/94 (2%)

Query: 62  LHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSV 121
              D      +++G + R++ +D LI     +     +    L ++L  G+ +L     +
Sbjct: 35  ADADRRLLTELLYGSVRRQRTLDALIDQFAKK--PAHQQPPDLRTLLHLGLYQLRFLDHI 92

Query: 122 PVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSR 155
           P    I   V +A          F+N +L + +R
Sbjct: 93  PDAAAIFTTVELAKQNQLSGLSGFVNGLLRQYAR 126


>gi|149020816|ref|ZP_01835345.1| hypothetical protein CGSSp23BS72_02224 [Streptococcus pneumoniae
           SP23-BS72]
 gi|221232467|ref|YP_002511620.1| ribosomal RNA small subunit methyltransferase [Streptococcus
           pneumoniae ATCC 700669]
 gi|225855165|ref|YP_002736677.1| ribosomal RNA small subunit methyltransferase B [Streptococcus
           pneumoniae JJA]
 gi|147930457|gb|EDK81440.1| hypothetical protein CGSSp23BS72_02224 [Streptococcus pneumoniae
           SP23-BS72]
 gi|220674928|emb|CAR69504.1| putative ribosomal RNA small subunit methyltransferase
           [Streptococcus pneumoniae ATCC 700669]
 gi|225722386|gb|ACO18239.1| ribosomal RNA small subunit methyltransferase B [Streptococcus
           pneumoniae JJA]
          Length = 437

 Score = 64.7 bits (157), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 28/139 (20%), Positives = 55/139 (39%), Gaps = 15/139 (10%)

Query: 18  IARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVM 77
            AR  A+  L           E +   + Y   A  +    S  L  D      +++G +
Sbjct: 6   TARSLALAVL-----------EDVFVNQAYSNIALNKHLKGSQLLAADKGLVTELVYGTV 54

Query: 78  DRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDF 137
            RK  ++  +S  + ++    +LD  L  +L     +L     +P   +++E V +A   
Sbjct: 55  ARKLTLEWYLSHFIEDR---DQLDSWLYVLLLMSAYQLRYLDKIPDHAVVNEAVELAK-L 110

Query: 138 FYGDEPKFINAVLDKVSRK 156
                 K +NA+L ++ R+
Sbjct: 111 RKKGSEKLVNALLRRILRE 129


>gi|297571430|ref|YP_003697204.1| Fmu (Sun) domain protein [Arcanobacterium haemolyticum DSM 20595]
 gi|296931777|gb|ADH92585.1| Fmu (Sun) domain protein [Arcanobacterium haemolyticum DSM 20595]
          Length = 484

 Score = 64.7 bits (157), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 34/155 (21%), Positives = 55/155 (35%), Gaps = 16/155 (10%)

Query: 5   DNKKDLKLSHRRGI---ARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVY 61
            +++       RG    ARL     L             + E   Y   A       +  
Sbjct: 2   SSQRPTNWKPGRGASDRARLVVFDVLM-----------AVEEDGAYANLALPREIRRARL 50

Query: 62  LHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSV 121
              D  +   + +G +      D +++   T     + LD  +  +LR G  +L+E    
Sbjct: 51  NKQDASYATNLCYGTLRLLGRWDAILA-HCTNGRPIAELDTAVKVLLRMGAHQLLELK-T 108

Query: 122 PVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRK 156
           P    I+E V IA +        FINAVL +VS +
Sbjct: 109 PPHAAINETVVIARNELSQGIAGFINAVLRRVSER 143


>gi|313665137|ref|YP_004047008.1| ribosomal RNA small subunit methyltransferase B [Mycoplasma leachii
           PG50]
 gi|312949207|gb|ADR23803.1| ribosomal RNA small subunit methyltransferase B [Mycoplasma leachii
           PG50]
          Length = 423

 Score = 64.4 bits (156), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 25/95 (26%), Positives = 48/95 (50%), Gaps = 7/95 (7%)

Query: 65  DLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILC-SILRAGVLELIECHSVPV 123
           D ++   ++HGV+  K H+D L++  +  K +      I    IL   + ++I  +S+P 
Sbjct: 37  DKDFVFNLVHGVISNKIHLDYLLAKLIDVKKT-----SIDLQIILLISLYQMIYLNSIPN 91

Query: 124 EVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEE 158
             I++E V +        +  FINA+L+K  R ++
Sbjct: 92  YAIVNESVNLIKT-TSQKQANFINAILNKFLRFKD 125


>gi|312867896|ref|ZP_07728101.1| ribosomal RNA small subunit methyltransferase B [Streptococcus
           parasanguinis F0405]
 gi|311096651|gb|EFQ54890.1| ribosomal RNA small subunit methyltransferase B [Streptococcus
           parasanguinis F0405]
          Length = 437

 Score = 64.4 bits (156), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 31/138 (22%), Positives = 59/138 (42%), Gaps = 15/138 (10%)

Query: 19  ARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMD 78
           AR   V+ L           E + E   Y   A  +    S     D  +   +++G + 
Sbjct: 8   AREQIVRVL-----------EEVFEQGAYSNIALNQALEHSQLSDKDRSFVTEVVYGTVA 56

Query: 79  RKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFF 138
           RK  ++  ++  + ++   ++LD  L  +L   + +L+    +P   I++E V IA    
Sbjct: 57  RKITLEWYLAHVIEDR---TKLDPWLYYLLMMSLYQLVYLDRIPDHAIVNEAVQIAK-CR 112

Query: 139 YGDEPKFINAVLDKVSRK 156
                KF+NA+L K+ R+
Sbjct: 113 KEGSEKFVNAILRKLLRE 130


>gi|227510466|ref|ZP_03940515.1| rRNA SAM-dependent methyltransferase RmsB [Lactobacillus brevis
           subsp. gravesensis ATCC 27305]
 gi|227190118|gb|EEI70185.1| rRNA SAM-dependent methyltransferase RmsB [Lactobacillus brevis
           subsp. gravesensis ATCC 27305]
          Length = 444

 Score = 64.4 bits (156), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 22/119 (18%), Positives = 45/119 (37%), Gaps = 14/119 (11%)

Query: 57  VESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCL-----TEKWSFSRLDMILCSILRAG 111
             +    VD   F  I++GV+  +  ++  +   L     TE W        +  +L   
Sbjct: 34  ESTSMSDVDKALFTNIVYGVIQHRMTLEYQLVPFLRDPEKTEDW--------VKELLYTA 85

Query: 112 VLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRSGCVSAITQ 170
           + +L     VP   I  E + IA    +    +F+  +L ++ RK  ++    +    +
Sbjct: 86  MYQLEYLDRVPKRAIFDESIKIAKSMGHDGTRRFVTGILHQMDRKG-VREPDKIEDPVK 143


>gi|83815307|ref|YP_445018.1| ribosomal RNA small subunit methyltransferase B [Salinibacter ruber
           DSM 13855]
 gi|83756701|gb|ABC44814.1| ribosomal RNA small subunit methyltransferase B [Salinibacter ruber
           DSM 13855]
          Length = 427

 Score = 64.4 bits (156), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 22/90 (24%), Positives = 39/90 (43%), Gaps = 3/90 (3%)

Query: 69  FRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIIS 128
            R ++ GV  +++ +D ++         +  ++  L  ILR G+ EL+   S P    + 
Sbjct: 24  ARELVAGVTRQRRWLDFVLGEAYHG--DYDSMEHRLQEILRLGLYELLF-QSTPTHAAVD 80

Query: 129 EYVCIAHDFFYGDEPKFINAVLDKVSRKEE 158
           EYV +A           +N VL  + R  E
Sbjct: 81  EYVELAKQALRPGAGNLVNGVLRTIDRDRE 110


>gi|294506884|ref|YP_003570942.1| Ribosomal RNA small subunit methyltransferase B [Salinibacter ruber
           M8]
 gi|294343212|emb|CBH23990.1| Ribosomal RNA small subunit methyltransferase B [Salinibacter ruber
           M8]
          Length = 448

 Score = 64.4 bits (156), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 22/90 (24%), Positives = 39/90 (43%), Gaps = 3/90 (3%)

Query: 69  FRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIIS 128
            R ++ GV  +++ +D ++         +  ++  L  ILR G+ EL+   S P    + 
Sbjct: 45  ARELVAGVTRQRRWLDFVLGEAYHG--DYDSMEHRLQEILRLGLYELLF-QSTPTHAAVD 101

Query: 129 EYVCIAHDFFYGDEPKFINAVLDKVSRKEE 158
           EYV +A           +N VL  + R  E
Sbjct: 102 EYVELAKQALRPGAGNLVNGVLRTIDRDRE 131


>gi|218202330|gb|EEC84757.1| hypothetical protein OsI_31764 [Oryza sativa Indica Group]
          Length = 570

 Score = 64.4 bits (156), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 27/96 (28%), Positives = 48/96 (50%), Gaps = 1/96 (1%)

Query: 65  DLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVE 124
           D+    VI+ G +  K+++D LI S  +E+  F  ++ +L  ILR G  E+++  +VP  
Sbjct: 155 DIRLVTVIVAGTVRWKRYLDYLIMSLCSEEKVFREMEPLLLQILRIGFFEILK-LNVPAY 213

Query: 125 VIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIK 160
             + E V +A           +NA+L K+   +E  
Sbjct: 214 AAVDENVRLAKVALRPGAGNLVNAILRKLLLLKEAN 249


>gi|261866823|ref|YP_003254745.1| methionyl-tRNA formyltransferase [Aggregatibacter
           actinomycetemcomitans D11S-1]
 gi|261412155|gb|ACX81526.1| methionyl-tRNA formyltransferase [Aggregatibacter
           actinomycetemcomitans D11S-1]
          Length = 451

 Score = 64.4 bits (156), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 34/156 (21%), Positives = 62/156 (39%), Gaps = 23/156 (14%)

Query: 10  LKLSHRRGIA-------RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYL 62
           +K S  +  A       R AAVQ L+Q+   G S + ++              D + V  
Sbjct: 1   MKTSKAKTSAETTALSARTAAVQILFQVLEQGKSLSSLL-------------PDAQVVIK 47

Query: 63  HVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVP 122
             DL   + I  GV      ++ +I+  + +         I+  +L  G+ +++    +P
Sbjct: 48  AQDLPLLQEICFGVCRVLPRLEQIIAQLVDK--PLRGKKRIVHCLLLVGLYQILYTR-IP 104

Query: 123 VEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEE 158
           V   + E V  A +         +NAVL +  R++E
Sbjct: 105 VYAAVDEIVNTAKNLQLQSFQGLVNAVLRRFLREQE 140


>gi|126649674|ref|ZP_01721910.1| 16S rRNA m(5)C 967 methyltransferase [Bacillus sp. B14905]
 gi|126593393|gb|EAZ87338.1| 16S rRNA m(5)C 967 methyltransferase [Bacillus sp. B14905]
          Length = 453

 Score = 64.4 bits (156), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 16/92 (17%), Positives = 35/92 (38%), Gaps = 5/92 (5%)

Query: 65  DLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVE 124
           D      + +G +  K  +D  +   +        +D  +  +LR  + ++     +P  
Sbjct: 48  DRALLTELTYGTLQHKMTLDYYLEPFIRGS-----IDHWVRWLLRISLYQMQYLTRIPAH 102

Query: 125 VIISEYVCIAHDFFYGDEPKFINAVLDKVSRK 156
             ++E V IA    +      +N +L  V R+
Sbjct: 103 AAVNEAVEIAKRRGHRGIASTVNGILRSVLRQ 134


>gi|115479747|ref|NP_001063467.1| Os09g0477900 [Oryza sativa Japonica Group]
 gi|52077347|dbj|BAD46388.1| sunL protein-like [Oryza sativa Japonica Group]
 gi|113631700|dbj|BAF25381.1| Os09g0477900 [Oryza sativa Japonica Group]
 gi|222641777|gb|EEE69909.1| hypothetical protein OsJ_29754 [Oryza sativa Japonica Group]
          Length = 570

 Score = 64.4 bits (156), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 27/96 (28%), Positives = 48/96 (50%), Gaps = 1/96 (1%)

Query: 65  DLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVE 124
           D+    VI+ G +  K+++D LI S  +E+  F  ++ +L  ILR G  E+++  +VP  
Sbjct: 155 DIRLVTVIVAGTVRWKRYLDYLIMSLCSEEKVFREMEPLLLQILRIGFFEILK-LNVPAY 213

Query: 125 VIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIK 160
             + E V +A           +NA+L K+   +E  
Sbjct: 214 AAVDENVRLAKVALRPGAGNLVNAILRKLLLLKEAN 249


>gi|159902549|ref|YP_001549893.1| transcription antitermination protein NusB [Prochlorococcus marinus
           str. MIT 9211]
 gi|159887725|gb|ABX07939.1| Antitermination protein NusB [Prochlorococcus marinus str. MIT
           9211]
          Length = 211

 Score = 64.4 bits (156), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 19/81 (23%), Positives = 34/81 (41%), Gaps = 2/81 (2%)

Query: 73  IHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVC 132
           +  V+   Q I+L +   +   W   RL  I   ILR      I   + P+ V  +E V 
Sbjct: 124 VSLVLQNLQSINLNLDEVMD-GWRLKRLPRIDQDILRLA-YIDIHILNAPIAVACNEAVN 181

Query: 133 IAHDFFYGDEPKFINAVLDKV 153
           + + +      + IN +L ++
Sbjct: 182 LGNKYSDKQGRRMINGILRRL 202


>gi|331266904|ref|YP_004326534.1| rRNA-specific 5-methylcytidine transferase [Streptococcus oralis
           Uo5]
 gi|326683576|emb|CBZ01194.1| rRNA-specific 5-methylcytidine transferase [Streptococcus oralis
           Uo5]
          Length = 437

 Score = 64.0 bits (155), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 31/139 (22%), Positives = 55/139 (39%), Gaps = 15/139 (10%)

Query: 18  IARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVM 77
            AR  A+  L           E +   + Y   A  +    S     D      I++G +
Sbjct: 6   TARNLALAVL-----------EDVFVNQAYSNIALNKHLKGSQLSAPDKGLVTEIVYGTV 54

Query: 78  DRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDF 137
            RK  ++  +S  + ++    +LD  L  +L     +L     +P   +++E V IA   
Sbjct: 55  ARKLTLEWYLSHFIEDR---DKLDNWLYILLLLSAYQLRYLDKIPNHAVVNEAVEIAKAR 111

Query: 138 FYGDEPKFINAVLDKVSRK 156
             G   K +NAVL ++ R+
Sbjct: 112 KKG-SEKLVNAVLRRILRE 129


>gi|254302720|ref|ZP_04970078.1| rRNA methyltransferase [Fusobacterium nucleatum subsp. polymorphum
           ATCC 10953]
 gi|148322912|gb|EDK88162.1| rRNA methyltransferase [Fusobacterium nucleatum subsp. polymorphum
           ATCC 10953]
          Length = 434

 Score = 64.0 bits (155), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 20/111 (18%), Positives = 44/111 (39%), Gaps = 13/111 (11%)

Query: 53  TELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSC---LTEKWSFSRLDMILCSILR 109
            +   E      +  +   I +GV+  K+ +D +I      + ++W        + ++LR
Sbjct: 25  NDAFREFFLSPKEKAFMTEIFYGVIRNKKFLDYIIERYTKDIRKEW--------IRNLLR 76

Query: 110 AGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIK 160
             + ++   +S    V+  E   +A  +      KFIN  L    R ++ +
Sbjct: 77  ISIYQITFMNSDDKGVVW-EATELAKKYSTAIS-KFINGTLRNYLRNKDSE 125


>gi|238854793|ref|ZP_04645123.1| ribosomal RNA small subunit methyltransferase B [Lactobacillus
           jensenii 269-3]
 gi|260664024|ref|ZP_05864877.1| ribosomal RNA small subunit methyltransferase B [Lactobacillus
           jensenii SJ-7A-US]
 gi|282933871|ref|ZP_06339219.1| ribosomal RNA small subunit methyltransferase B [Lactobacillus
           jensenii 208-1]
 gi|238832583|gb|EEQ24890.1| ribosomal RNA small subunit methyltransferase B [Lactobacillus
           jensenii 269-3]
 gi|260561910|gb|EEX27879.1| ribosomal RNA small subunit methyltransferase B [Lactobacillus
           jensenii SJ-7A-US]
 gi|281301960|gb|EFA94214.1| ribosomal RNA small subunit methyltransferase B [Lactobacillus
           jensenii 208-1]
          Length = 437

 Score = 64.0 bits (155), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 21/107 (19%), Positives = 43/107 (40%), Gaps = 6/107 (5%)

Query: 58  ESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIE 117
           E+     D  +   +++G +  +  ++  +   L  K     L      +L   V +LI 
Sbjct: 33  ENNLSQKDQAFVTQLVYGTIQYQLFLEYQLKDLLRTKLKEDYLKP----LLLMSVYQLIF 88

Query: 118 CHSVPVEVIISEYVCIAHDFFYGDEPKF--INAVLDKVSRKEEIKRS 162
            + VP   ++ E   +A DF   +   F  +N +L    R+ ++  S
Sbjct: 89  LNRVPNRAVLDEANKLAKDFGKKNSSGFRLVNGILRSFLRRGQVLPS 135


>gi|169827064|ref|YP_001697222.1| ribosomal RNA small subunit methyltransferase B [Lysinibacillus
           sphaericus C3-41]
 gi|168991552|gb|ACA39092.1| Ribosomal RNA small subunit methyltransferase B [Lysinibacillus
           sphaericus C3-41]
          Length = 453

 Score = 64.0 bits (155), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 16/92 (17%), Positives = 35/92 (38%), Gaps = 5/92 (5%)

Query: 65  DLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVE 124
           D      + +G +  K  +D  +   +        +D  +  +LR  + ++     +P  
Sbjct: 48  DRALLTELTYGTLQHKMTLDYYLEPFIRGS-----IDHWVRWLLRISLYQMQYLTRIPAH 102

Query: 125 VIISEYVCIAHDFFYGDEPKFINAVLDKVSRK 156
             ++E V IA    +      +N +L  V R+
Sbjct: 103 AAVNEAVEIAKRRGHRGIASTVNGILRSVLRQ 134


>gi|315222002|ref|ZP_07863913.1| ribosomal RNA small subunit methyltransferase B [Streptococcus
           anginosus F0211]
 gi|315188968|gb|EFU22672.1| ribosomal RNA small subunit methyltransferase B [Streptococcus
           anginosus F0211]
          Length = 440

 Score = 64.0 bits (155), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 30/143 (20%), Positives = 57/143 (39%), Gaps = 15/143 (10%)

Query: 14  HRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVII 73
           ++   AR  A+  L           E +     Y   A  +  +E      D      I+
Sbjct: 6   NKTKTARQTALAVL-----------EAVFSEGAYSNIALNQALLEVPLSSADKGLVTEIV 54

Query: 74  HGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCI 133
           +G + RK  ++  +S  + ++    +LD  L  +L   + +++    +P   +++E V +
Sbjct: 55  YGTVARKITLEWYLSHVIEDR---DKLDSWLYFLLLMSLYQILYLDKIPAHAVVNEAVEL 111

Query: 134 AHDFFYGDEPKFINAVLDKVSRK 156
           A     G   KF NAVL  + R 
Sbjct: 112 AKVRKKG-SEKFANAVLRGLLRD 133


>gi|85057607|ref|YP_456523.1| N utilization substance protein B [Aster yellows witches'-broom
           phytoplasma AYWB]
 gi|84789712|gb|ABC65444.1| N utilization substance protein B [Aster yellows witches'-broom
           phytoplasma AYWB]
          Length = 138

 Score = 64.0 bits (155), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 33/159 (20%), Positives = 66/159 (41%), Gaps = 30/159 (18%)

Query: 10  LKLSHRRGIARLA---AVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDL 66
           +K    +  +RL     ++ LYQ D    + T                  +     +   
Sbjct: 1   MKRPPNKKESRLLRIELMKLLYQYDFYQNNLT------------------LSQTNTNPIF 42

Query: 67  EWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVI 126
            +F+ II     + + ID +I+  L   +  +RL+ +  +I+R    EL+E  ++   +I
Sbjct: 43  TFFQKIIT----KLKFIDEIITKSLY-DYKINRLNKVDRAIIRLATYELLET-NISHAII 96

Query: 127 ISEYVCIAHDFF---YGDEPKFINAVLDKVSRKEEIKRS 162
           I E + I   F       + KF N +LD++ R+ ++ + 
Sbjct: 97  IDEAIEITKQFCNLNDEKQHKFNNKLLDQIYRQLQMYKK 135


>gi|39998462|ref|NP_954413.1| Sun protein [Geobacter sulfurreducens PCA]
 gi|39985409|gb|AAR36763.1| Sun protein [Geobacter sulfurreducens PCA]
 gi|298507406|gb|ADI86129.1| 16S rRNA (5-methyl-C967)-methyltransferase [Geobacter
           sulfurreducens KN400]
          Length = 448

 Score = 64.0 bits (155), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 28/127 (22%), Positives = 53/127 (41%), Gaps = 12/127 (9%)

Query: 36  STTEIISEYETYRFCADTELDVE---SVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLT 92
           S  +I+   E  R  A+  +D E         D      +++GV+ R   +D      L 
Sbjct: 11  SAFDILVRIERERTFAEPLIDRELSGGALKGPDRGLLTELVYGVLRRTATLD-----YLV 65

Query: 93  EKWSFSRLDMILCSIL---RAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAV 149
           + +  +R   +  S+L   R G+ ++     +PV   ++E V +A +         +NAV
Sbjct: 66  DLFCATRAAKLERSVLILLRLGLYQIFFLDRIPVSAAVNETVTLARE-KSPRASGLVNAV 124

Query: 150 LDKVSRK 156
           L +  R+
Sbjct: 125 LRRSDRE 131


>gi|22297753|ref|NP_681000.1| RNA-binding protein [Thermosynechococcus elongatus BP-1]
 gi|22293930|dbj|BAC07762.1| RNA-binding protein [Thermosynechococcus elongatus BP-1]
          Length = 442

 Score = 64.0 bits (155), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 23/144 (15%), Positives = 47/144 (32%), Gaps = 31/144 (21%)

Query: 19  ARLAAVQAL-------YQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71
           AR  A+  L       Y       +  +++  Y  +                 D      
Sbjct: 5   ARRLALDTLERVAKGAY----ADVALHQVLQRYALH---------------GSDRTLVTE 45

Query: 72  IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
           +++G + +++ +D LI     +         +   +LR G+ +L     +P    +   V
Sbjct: 46  LVYGTIRQQRTLDTLIQGFCRQLPPL----PVQL-VLRLGLYQLRYLDRIPAHAAVHSSV 100

Query: 132 CIAHDFFYGDEPKFINAVLDKVSR 155
            +          K +N VL + SR
Sbjct: 101 ELVKQIGLEGFAKLVNGVLRRYSR 124


>gi|86605784|ref|YP_474547.1| ribosomal RNA small subunit methyltransferase B [Synechococcus sp.
           JA-3-3Ab]
 gi|86554326|gb|ABC99284.1| ribosomal RNA small subunit methyltransferase B [Synechococcus sp.
           JA-3-3Ab]
          Length = 448

 Score = 64.0 bits (155), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 28/138 (20%), Positives = 48/138 (34%), Gaps = 13/138 (9%)

Query: 19  ARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMD 78
           AR  A+ AL +I+        ++     +           S  +  D      +++G+  
Sbjct: 3   ARQLALLALQKIERHNAYADVVLEHLLAH-----------SRLIPADCHLVSELVYGITR 51

Query: 79  RKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFF 138
           R++ +D LI            LD  L  IL  G  +L     +P    I   V +A    
Sbjct: 52  RRRTLDALIDCFARRPAHQQPLD--LRLILYLGFYQLAFLDHIPPRAAIHTSVELARQVG 109

Query: 139 YGDEPKFINAVLDKVSRK 156
            G     +N +L    R+
Sbjct: 110 LGSLTGVVNGILRAYQRQ 127


>gi|291534144|emb|CBL07257.1| Transcription termination factor [Megamonas hypermegale ART12/1]
          Length = 116

 Score = 64.0 bits (155), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 16/117 (13%), Positives = 47/117 (40%), Gaps = 13/117 (11%)

Query: 19  ARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMD 78
           AR  A+  L           E+ ++ + Y   + +    ++     D  +   +++G + 
Sbjct: 3   AREVALNIL----------NEVYTQ-QAYANISLSRHLQKNQLSDQDRRFITELVYGTVK 51

Query: 79  RKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
               +  ++   +      ++++  + +ILR G+ +++    +P     +E V +A 
Sbjct: 52  AGDTLLWILKKFVNR--PLNKIEPTIINILRLGIYQIVFMDKIPESAACNEAVNLAK 106


>gi|293391667|ref|ZP_06636001.1| methionyl-tRNA formyltransferase [Aggregatibacter
           actinomycetemcomitans D7S-1]
 gi|290952201|gb|EFE02320.1| methionyl-tRNA formyltransferase [Aggregatibacter
           actinomycetemcomitans D7S-1]
          Length = 451

 Score = 64.0 bits (155), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 34/156 (21%), Positives = 62/156 (39%), Gaps = 23/156 (14%)

Query: 10  LKLSHRRGIA-------RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYL 62
           +K S  +  A       R AAVQ L+Q+   G S + ++              D + V  
Sbjct: 1   MKTSKAKTSAETTALSARTAAVQILFQVLEQGKSLSSLL-------------PDAQVVIK 47

Query: 63  HVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVP 122
             DL   + I  GV      ++ +I+  + +         I+  +L  G+ +++    +P
Sbjct: 48  AQDLPLLQEICFGVCRVLPRLEQIIAQLVDK--PLRGKKRIVHCLLLVGLYQILYTR-IP 104

Query: 123 VEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEE 158
           V   + E V  A +         +NAVL +  R++E
Sbjct: 105 VYAAVDEIVNTAKNLQLQSFQGLVNAVLRRFLREQE 140


>gi|256384049|gb|ACU78619.1| ribosomal RNA small subunit methyltransferase B [Mycoplasma
           mycoides subsp. capri str. GM12]
 gi|256384881|gb|ACU79450.1| ribosomal RNA small subunit methyltransferase B [Mycoplasma
           mycoides subsp. capri str. GM12]
 gi|296455325|gb|ADH21560.1| ribosomal RNA small subunit methyltransferase B [synthetic
           Mycoplasma mycoides JCVI-syn1.0]
          Length = 419

 Score = 64.0 bits (155), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 24/95 (25%), Positives = 47/95 (49%), Gaps = 7/95 (7%)

Query: 65  DLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILC-SILRAGVLELIECHSVPV 123
           D ++   ++HGV+  K H+D L+   +  K +      I    IL   + ++I  +S+P 
Sbjct: 37  DKDFVFNLVHGVISNKIHLDYLLGKLIDVKKT-----SIDLQIILLISLYQMIYLNSIPN 91

Query: 124 EVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEE 158
             I++E + +        +  FINA+L+K  R ++
Sbjct: 92  YAIVNESINLIKT-TSQKQANFINAILNKFLRFKD 125


>gi|313890028|ref|ZP_07823664.1| ribosomal RNA small subunit methyltransferase B [Streptococcus
           pseudoporcinus SPIN 20026]
 gi|313121619|gb|EFR44722.1| ribosomal RNA small subunit methyltransferase B [Streptococcus
           pseudoporcinus SPIN 20026]
          Length = 440

 Score = 64.0 bits (155), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 29/140 (20%), Positives = 58/140 (41%), Gaps = 15/140 (10%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           +  AR  A+ A+           E I +   Y   A             D      I++G
Sbjct: 6   KTKARGKALLAI-----------EDIFDNGAYSNIALNNQLSNHSVQDKDKGLITEIVYG 54

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
            + +K  ++  +S  + ++    +LD  +  +L   + +++    +P   I+++ V IA 
Sbjct: 55  TIAKKITLEWYLSHYVEDR---EKLDKWVYYLLMLSLYQMLYLEKIPSHAIVNDAVDIAK 111

Query: 136 DFFYGDEP-KFINAVLDKVS 154
           +  Y     K+INA+L +VS
Sbjct: 112 NRGYKRGAEKYINAILRQVS 131


>gi|332522158|ref|ZP_08398410.1| ribosomal RNA small subunit methyltransferase B [Streptococcus
           porcinus str. Jelinkova 176]
 gi|332313422|gb|EGJ26407.1| ribosomal RNA small subunit methyltransferase B [Streptococcus
           porcinus str. Jelinkova 176]
          Length = 440

 Score = 64.0 bits (155), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 28/140 (20%), Positives = 57/140 (40%), Gaps = 15/140 (10%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           +  AR  A+ A+           E I +   Y   A             D      I++G
Sbjct: 6   KTKARGKALLAI-----------EDIFDNGAYSNIALNNQLSNQSIQGKDKGLITEIVYG 54

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
            + +K  ++  +S  + ++    +LD  +  +L   + +++    VP   I+++ V IA 
Sbjct: 55  TIAKKITLEWYLSHYVEDR---EKLDKWVYYLLMLSLYQILYLEKVPSHAIVNDAVDIAK 111

Query: 136 DFFYGDEP-KFINAVLDKVS 154
           +        K+INA+L ++S
Sbjct: 112 NRGNKRGAEKYINAILRQIS 131


>gi|306825761|ref|ZP_07459100.1| ribosomal RNA small subunit methyltransferase B [Streptococcus sp.
           oral taxon 071 str. 73H25AP]
 gi|304432122|gb|EFM35099.1| ribosomal RNA small subunit methyltransferase B [Streptococcus sp.
           oral taxon 071 str. 73H25AP]
          Length = 437

 Score = 64.0 bits (155), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 31/139 (22%), Positives = 56/139 (40%), Gaps = 15/139 (10%)

Query: 18  IARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVM 77
            AR  A+  L           E +   + Y   A  +    S     D      I++G +
Sbjct: 6   TARSLALAVL-----------EDVFVNQAYSNIALNKHLKGSHLSAADKGLVTEIVYGTV 54

Query: 78  DRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDF 137
            RK  ++  +S  + ++    +LD  L  +L   V ++     VP   +++E V +A   
Sbjct: 55  ARKLTLEWYLSHFIEDR---DKLDNWLYVLLLMSVYQVRFLDKVPDHAVVNEAVELAKVR 111

Query: 138 FYGDEPKFINAVLDKVSRK 156
             G   K +NAVL ++ R+
Sbjct: 112 KQG-SEKLVNAVLRRILRE 129


>gi|304440678|ref|ZP_07400562.1| ribosomal RNA small subunit methyltransferase B [Peptoniphilus
           duerdenii ATCC BAA-1640]
 gi|304370865|gb|EFM24487.1| ribosomal RNA small subunit methyltransferase B [Peptoniphilus
           duerdenii ATCC BAA-1640]
          Length = 425

 Score = 63.6 bits (154), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 27/141 (19%), Positives = 49/141 (34%), Gaps = 20/141 (14%)

Query: 20  RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79
           R  A+Q L        S+   +SE        +             +   R I  G +  
Sbjct: 12  RREALQIL-----KNVSSGAFLSEELNKSRSEN-------------IALLRNITTGSLRN 53

Query: 80  KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139
           K ++D LI      K  F ++   +  IL   + + I    +P   I+ E V +     +
Sbjct: 54  KTYLDYLIKKN--SKIRFKKIHEDIRIILEMSLYQYIFLDGIPDYTIVDEAVKLTKKVSH 111

Query: 140 GDEPKFINAVLDKVSRKEEIK 160
                F+N +L    R ++ +
Sbjct: 112 KGSVGFVNGLLRNFMRTKDFE 132


>gi|332364575|gb|EGJ42344.1| RNA methyltransferase Sun [Streptococcus sanguinis SK1059]
          Length = 438

 Score = 63.6 bits (154), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 30/145 (20%), Positives = 60/145 (41%), Gaps = 15/145 (10%)

Query: 12  LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71
           +  ++  AR   ++ L           E+  E        +  L+ +S+    D      
Sbjct: 1   MESKQKTARWQVLEIL----------EEVFEEGAYSNIALNRALN-QSLLSQADKGLVTE 49

Query: 72  IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
           +++G + RK  ++  +S  L E     +LD  L  +L   + +++    +P    + E V
Sbjct: 50  LVYGTVARKITLEWYLS-HLIEDR--DKLDNWLYILLMLSLYQMLYLDKIPQHAAVHEAV 106

Query: 132 CIAHDFFYGDEPKFINAVLDKVSRK 156
            IA     G   KF+NA+L ++ R+
Sbjct: 107 EIAKIRKRG-SEKFVNALLRRIERE 130


>gi|149173494|ref|ZP_01852124.1| sun protein [Planctomyces maris DSM 8797]
 gi|148847676|gb|EDL62009.1| sun protein [Planctomyces maris DSM 8797]
          Length = 477

 Score = 63.6 bits (154), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 30/139 (21%), Positives = 54/139 (38%), Gaps = 13/139 (9%)

Query: 17  GIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGV 76
             AR  A   L +        ++ + ++E                   D      I  GV
Sbjct: 31  RSARQLAFFLLEEYRRTDQFISDSMQQWERR-----------IDLSSADWRLAMEISIGV 79

Query: 77  MDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHD 136
           + R+  +D +I S LT      +++  L ++L+ G  +L+    +P    +SE V +A  
Sbjct: 80  VRRQLTLDTIIESQLTR--PREKVEAPLWTLLQIGAYQLVMLDQIPDHAAVSETVELAGK 137

Query: 137 FFYGDEPKFINAVLDKVSR 155
                  K +NA+L  +SR
Sbjct: 138 LQRVRWKKMVNAILRSISR 156


>gi|186684748|ref|YP_001867944.1| sun protein [Nostoc punctiforme PCC 73102]
 gi|186467200|gb|ACC83001.1| sun protein [Nostoc punctiforme PCC 73102]
          Length = 487

 Score = 63.6 bits (154), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 20/95 (21%), Positives = 38/95 (40%), Gaps = 2/95 (2%)

Query: 62  LHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSV 121
              D      +++G + R++ +D LI      K         L +IL  G  +L     +
Sbjct: 35  PDRDRRLVTELVYGSVRRQRTLDTLIDQFAKNKSHQQ--PQDLRTILHLGFYQLRYQERI 92

Query: 122 PVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRK 156
           P    ++  V +A +  +     F+N +L +  RK
Sbjct: 93  PASAAVNTTVQLAKENGFSGLTGFVNGLLRQYLRK 127


>gi|169824361|ref|YP_001691972.1| putative rRNA methylase [Finegoldia magna ATCC 29328]
 gi|167831166|dbj|BAG08082.1| putative rRNA methylase [Finegoldia magna ATCC 29328]
          Length = 423

 Score = 63.6 bits (154), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 24/98 (24%), Positives = 43/98 (43%), Gaps = 7/98 (7%)

Query: 59  SVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIEC 118
                 D+ + +  +   ++ +  +D +IS C       +RLD I+  ILR    E++  
Sbjct: 31  GDLDKRDIAYIKKCVFTEIENRFFVDYVISKC--SDLEINRLDKIVLEILRMATTEILFM 88

Query: 119 HSVPVEVIISEYVCIAHDFFYGDEPK-FINAVLDKVSR 155
            +    V+  E V +A         K ++NAVL +V R
Sbjct: 89  KTADYAVV-DEAVELA---GSITRYKDYVNAVLREVCR 122


>gi|81428305|ref|YP_395305.1| putative rRNA methytransferase (sun protein) [Lactobacillus sakei
           subsp. sakei 23K]
 gi|78609947|emb|CAI54994.1| Putative rRNA methytransferase (sun protein) [Lactobacillus sakei
           subsp. sakei 23K]
          Length = 447

 Score = 63.6 bits (154), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 25/136 (18%), Positives = 55/136 (40%), Gaps = 14/136 (10%)

Query: 20  RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79
           R  AV+ L             I++  +Y   A  ++  ++     D  +   +++GV+  
Sbjct: 7   RYLAVEIL-----------TAIAKQNSYSNLALDQVINKNRLNPQDAGFLTQLVYGVIQH 55

Query: 80  KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139
           +  +D  ++  + +     ++D  +  +LR  V + +    VP   I  E   IA    +
Sbjct: 56  EYTLDYYLAPFIQK---PKKMDNWVRQVLRTAVYQQVYLDRVPEHAIFYEATEIAKKMGH 112

Query: 140 GDEPKFINAVLDKVSR 155
               K + A+L ++ R
Sbjct: 113 AGVSKLVTAILRQLQR 128


>gi|325001359|ref|ZP_08122471.1| ribosomal RNA small subunit methyltransferase [Pseudonocardia sp.
           P1]
          Length = 280

 Score = 63.6 bits (154), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 30/142 (21%), Positives = 51/142 (35%), Gaps = 14/142 (9%)

Query: 19  ARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMD 78
           AR AA   L             + E E Y   A   +         D      + +G + 
Sbjct: 5   ARQAAYDLL-----------TAVREREAYANLALPGILRRYRLRDRDAALATELGYGTLR 53

Query: 79  RKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFF 138
            +  +D +I +C       S+++  L   LR G  +L+    VP    +S  V +     
Sbjct: 54  AQGLLDTVIDACTDR--PLSKIEHPLLDALRLGAYQLL-RTRVPAHAAVSTCVELVRGDH 110

Query: 139 YGDEPKFINAVLDKVSRKEEIK 160
                 F+NAVL ++   +E +
Sbjct: 111 GSQSAGFVNAVLRRIGEHDEAE 132


>gi|284991542|ref|YP_003410096.1| Fmu (Sun) domain-containing protein [Geodermatophilus obscurus DSM
           43160]
 gi|284064787|gb|ADB75725.1| Fmu (Sun) domain protein [Geodermatophilus obscurus DSM 43160]
          Length = 460

 Score = 63.6 bits (154), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 26/136 (19%), Positives = 51/136 (37%), Gaps = 12/136 (8%)

Query: 19  ARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMD 78
           ARL A   L      G S  +  +     +   +   D+       D  +   + +G + 
Sbjct: 23  ARLTAFDVL-----DGVSGRDAYANLLLPQLLRERAADLGER----DAAFATQLAYGTLR 73

Query: 79  RKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFF 138
               +D +++  ++     + LD  +  +LR G  +L++   VP    +   V +     
Sbjct: 74  ATGTLDAVLAPLVSR--PLAELDPRVLDLLRLGAYQLLDLR-VPAHAAVDTTVALTRAIV 130

Query: 139 YGDEPKFINAVLDKVS 154
                  +NAVL KV+
Sbjct: 131 GTGASGLVNAVLRKVA 146


>gi|296140265|ref|YP_003647508.1| Fmu (Sun) domain protein [Tsukamurella paurometabola DSM 20162]
 gi|296028399|gb|ADG79169.1| Fmu (Sun) domain protein [Tsukamurella paurometabola DSM 20162]
          Length = 452

 Score = 63.6 bits (154), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 31/140 (22%), Positives = 49/140 (35%), Gaps = 14/140 (10%)

Query: 19  ARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMD 78
           AR AA++ L             + E   Y       L  ++     D  +   + +G   
Sbjct: 5   ARRAALETL-----------AAVRERGAYANLVLPGLLRQARLTGRDAAFATELTYGACR 53

Query: 79  RKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFF 138
            +  +D +I        S   +D  +   LR GV +L+    V     + E V       
Sbjct: 54  AQGLLDAVIEDA--SGRSVDEIDGPVLDALRLGVYQLL-RTRVGAHAAVDETVEAVKASS 110

Query: 139 YGDEPKFINAVLDKVSRKEE 158
                 F NAVL KVS+ +E
Sbjct: 111 GRGAGGFANAVLRKVSKADE 130


>gi|159045573|ref|YP_001534367.1| ribosomal RNA small subunit methyltransferase B [Dinoroseobacter
           shibae DFL 12]
 gi|157913333|gb|ABV94766.1| ribosomal RNA small subunit methyltransferase B [Dinoroseobacter
           shibae DFL 12]
          Length = 443

 Score = 63.6 bits (154), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 24/119 (20%), Positives = 42/119 (35%), Gaps = 13/119 (10%)

Query: 40  IISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSR 99
           ++SE  +            +     +    + +  GV+   +  D ++   L       R
Sbjct: 20  VLSERMSLADQTAHPKGPFAECAPAERARAQRLATGVLRHLRTCDQMLGPHL-------R 72

Query: 100 LDM--ILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDE--PKFINAVLDKVS 154
           +     + +ILR G  EL      P  V+    V +A          P  +NAVL KV+
Sbjct: 73  MPPYPAIHNILRLGAYELCALGEAPHGVV-HAAVDLARA-EDPQSRAPGLVNAVLRKVA 129


>gi|256851318|ref|ZP_05556707.1| ribosomal RNA small subunit methyltransferase B [Lactobacillus
           jensenii 27-2-CHN]
 gi|260660742|ref|ZP_05861657.1| ribosomal RNA small subunit methyltransferase B [Lactobacillus
           jensenii 115-3-CHN]
 gi|282933237|ref|ZP_06338624.1| ribosomal RNA small subunit methyltransferase B [Lactobacillus
           jensenii 208-1]
 gi|297206188|ref|ZP_06923583.1| ribosomal RNA small subunit methyltransferase B [Lactobacillus
           jensenii JV-V16]
 gi|256616380|gb|EEU21568.1| ribosomal RNA small subunit methyltransferase B [Lactobacillus
           jensenii 27-2-CHN]
 gi|260548464|gb|EEX24439.1| ribosomal RNA small subunit methyltransferase B [Lactobacillus
           jensenii 115-3-CHN]
 gi|281302741|gb|EFA94956.1| ribosomal RNA small subunit methyltransferase B [Lactobacillus
           jensenii 208-1]
 gi|297149314|gb|EFH29612.1| ribosomal RNA small subunit methyltransferase B [Lactobacillus
           jensenii JV-V16]
          Length = 437

 Score = 63.6 bits (154), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 19/107 (17%), Positives = 43/107 (40%), Gaps = 6/107 (5%)

Query: 58  ESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIE 117
           E+ +   D  +   +++G +  +  ++  +   L  K     L      +L   V +LI 
Sbjct: 33  ENNFSQKDQAFVTQLVYGTIQYQLFLEYQLKDLLRTKLKEDYLKP----LLLMSVYQLIF 88

Query: 118 CHSVPVEVIISEYVCIAHDFFYGDEPKF--INAVLDKVSRKEEIKRS 162
            + VP   ++ E   +A  F   +   +  +N +L    R+ ++  S
Sbjct: 89  LNRVPNRAVLDEANKLAKSFGKKNSSGYRLVNGILRSFLRRGQVLPS 135


>gi|144899806|emb|CAM76670.1| Fmu (Sun)/eukaryotic nucleolar NOL1/Nop2p:Antitermination protein
           NusB [Magnetospirillum gryphiswaldense MSR-1]
          Length = 437

 Score = 63.2 bits (153), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 26/125 (20%), Positives = 53/125 (42%), Gaps = 14/125 (11%)

Query: 40  IISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSR 99
           ++++        D+E  + +     D  + R+++   + R   ID +I+ C+      ++
Sbjct: 25  VLAQKRLLDETLDSEPRL-TKLAERDRAFTRMLVATTLRRLGQIDAVIARCIDRPLP-AK 82

Query: 100 LDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEP-----KFINAVLDKVS 154
              +  ++LR G  +L+     P    IS  V +A      + P     K INAVL ++ 
Sbjct: 83  AGRV-RNMLRLGAAQLLF-LDTPPHAAISTTVDLAK-----NSPLAGFAKLINAVLRRLD 135

Query: 155 RKEEI 159
           R+   
Sbjct: 136 REGRA 140


>gi|288932240|ref|YP_003436300.1| Fmu (Sun) domain protein [Ferroglobus placidus DSM 10642]
 gi|288894488|gb|ADC66025.1| Fmu (Sun) domain protein [Ferroglobus placidus DSM 10642]
          Length = 446

 Score = 63.2 bits (153), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 27/142 (19%), Positives = 53/142 (37%), Gaps = 6/142 (4%)

Query: 32  IIGCSTTEIISEYETYRFCADTELDVESVYLHVDLE---WFRVIIHGVMDRKQHIDLLIS 88
           +      EI+ + +         L    +  +VD +        +  V  R+  ID ++ 
Sbjct: 12  VNQEIAAEILEKLDKEVISEKELLRRFFLGKNVDYKIRGAVHAYVMEVSKRRNVIDFILE 71

Query: 89  SCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINA 148
             L  K     +   + ++LR    E+     VP  +     V IA   F      F+NA
Sbjct: 72  KALKPK-KLEDVKPFVRNLLRIATYEI-FFKKVPPALATDCAVRIAKKRFGIKAASFVNA 129

Query: 149 VLDKVSRKEEIKRSGCVSAITQ 170
           +L K + + ++K+     + T+
Sbjct: 130 ILRK-AERVDLKKEMEKLSRTK 150


>gi|256392286|ref|YP_003113850.1| Fmu (Sun) domain-containing protein [Catenulispora acidiphila DSM
           44928]
 gi|256358512|gb|ACU72009.1| Fmu (Sun) domain protein [Catenulispora acidiphila DSM 44928]
          Length = 493

 Score = 63.2 bits (153), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 27/138 (19%), Positives = 51/138 (36%), Gaps = 14/138 (10%)

Query: 18  IARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVM 77
            AR AA++ L           E +   + Y       L  +      D  +   + +G +
Sbjct: 12  QARAAALEVL-----------EAVRTRDAYANLLLPRLLRDRGLSGRDAAFTTELSYGTL 60

Query: 78  DRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDF 137
                 D +I++C+        +D ++   LR G  +L+    VP    +S  V +    
Sbjct: 61  RGLGTYDAIIAACVDR--DLDAVDPVVLDALRIGAHQLLAM-DVPPHAAVSTTVDLVRSV 117

Query: 138 FYGDEPKFINAVLDKVSR 155
                 +F NA+L +V +
Sbjct: 118 SNEGASRFANAILRRVGQ 135


>gi|162456172|ref|YP_001618539.1| Sun protein [Sorangium cellulosum 'So ce 56']
 gi|161166754|emb|CAN98059.1| Sun protein [Sorangium cellulosum 'So ce 56']
          Length = 496

 Score = 63.2 bits (153), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 23/108 (21%), Positives = 42/108 (38%), Gaps = 4/108 (3%)

Query: 52  DTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEK-WSFSRLDMILCSILRA 110
           D EL         D+     +++GV+  +  ++  I+    +  W+    D ++ + +  
Sbjct: 53  DAELRRAPALDPRDIGLATELVYGVLRAQAALEARIAEFAAKSRWT---ADPLVRAHVLM 109

Query: 111 GVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEE 158
           G   L     VP    +SE V  A          F NAVL +++   E
Sbjct: 110 GAYSLCFLDRVPSFAAVSEAVDGAQAAGGPRVGAFANAVLRRLAAAVE 157


>gi|296110622|ref|YP_003621003.1| rRNA methylase (putative) [Leuconostoc kimchii IMSNU 11154]
 gi|295832153|gb|ADG40034.1| rRNA methylase (putative) [Leuconostoc kimchii IMSNU 11154]
          Length = 457

 Score = 63.2 bits (153), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 23/148 (15%), Positives = 57/148 (38%), Gaps = 19/148 (12%)

Query: 12  LSHRRGIA---RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEW 68
           +S +R  +   R+ AVQ L               +   Y      ++  +      D   
Sbjct: 1   MSDKRVYSDNPRVLAVQTL------------AKIKNGAYSNLQLNQVIKQHQLGEADKRL 48

Query: 69  FRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIIS 128
              +++GV+  +   +  ++  +  K    ++D  +  +L   + ++     +P   I +
Sbjct: 49  LTTLVYGVIQHRLTFEYWLTPFIGNK----KIDAWVRELLYTAMFQMEFLDKIPEHAIFN 104

Query: 129 EYVCIAHDFFYGDEPKFINAVLDKVSRK 156
           E + +A    +    KF+ A+L  ++R+
Sbjct: 105 ESIEVAKILGHVGTGKFVTAILHNIARQ 132


>gi|215403254|ref|ZP_03415435.1| fmu protein (sun protein) [Mycobacterium tuberculosis 02_1987]
 gi|289745158|ref|ZP_06504536.1| sun protein [Mycobacterium tuberculosis 02_1987]
 gi|289685686|gb|EFD53174.1| sun protein [Mycobacterium tuberculosis 02_1987]
          Length = 768

 Score = 63.2 bits (153), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 31/152 (20%), Positives = 55/152 (36%), Gaps = 14/152 (9%)

Query: 19  ARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMD 78
           AR AA + L             +S  + Y       L  +      D  +   + +G   
Sbjct: 327 ARRAAFETL-----------RAVSARDAYANLVLPALLAQRGIGGRDAAFATELTYGTCR 375

Query: 79  RKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFF 138
            +  +D +I +      S   +D +L  +LR G  +L+    V     +S  V  A   F
Sbjct: 376 ARGLLDAVIGAAAER--SPQAIDPVLLDLLRLGTYQLL-RTRVDAHAAVSTTVEQAGIEF 432

Query: 139 YGDEPKFINAVLDKVSRKEEIKRSGCVSAITQ 170
                 F+N VL  ++ ++E    G ++   Q
Sbjct: 433 DSARAGFVNGVLRTIAGRDERSWVGELAPDAQ 464


>gi|225461943|ref|XP_002266112.1| PREDICTED: hypothetical protein [Vitis vinifera]
 gi|296089930|emb|CBI39749.3| unnamed protein product [Vitis vinifera]
          Length = 525

 Score = 63.2 bits (153), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 23/88 (26%), Positives = 42/88 (47%), Gaps = 1/88 (1%)

Query: 71  VIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEY 130
            I+ G +  ++++D LI S   +  +F  ++ +L  ILR G  E++     P  V+  E 
Sbjct: 116 DIVGGSIRWRRYLDHLIVSLCHDSKTFRSMEPLLLQILRIGFYEIVNLDMPPYAVV-DEN 174

Query: 131 VCIAHDFFYGDEPKFINAVLDKVSRKEE 158
           V +A           +NA+L K+   +E
Sbjct: 175 VRLAKVALRPGAGNMVNAILRKLVLLKE 202


>gi|147837899|emb|CAN67145.1| hypothetical protein VITISV_042360 [Vitis vinifera]
          Length = 324

 Score = 63.2 bits (153), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 23/88 (26%), Positives = 42/88 (47%), Gaps = 1/88 (1%)

Query: 71  VIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEY 130
            I+ G +  ++++D LI S   +  +F  ++ +L  ILR G  E++     P  V+  E 
Sbjct: 116 DIVGGSIRWRRYLDHLIVSLCHDSKTFRSMEPLLLQILRIGFYEIVNLDMPPYAVV-DEN 174

Query: 131 VCIAHDFFYGDEPKFINAVLDKVSRKEE 158
           V +A           +NA+L K+   +E
Sbjct: 175 VRLAKVALRPGAANMVNAILRKLVLLKE 202


>gi|195978660|ref|YP_002123904.1| 16S rRNA m(5)C 967 methyltransferase RsmB [Streptococcus equi
           subsp. zooepidemicus MGCS10565]
 gi|195975365|gb|ACG62891.1| 16S rRNA m(5)C 967 methyltransferase RsmB [Streptococcus equi
           subsp. zooepidemicus MGCS10565]
          Length = 442

 Score = 63.2 bits (153), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 30/139 (21%), Positives = 57/139 (41%), Gaps = 9/139 (6%)

Query: 37  TTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWS 96
             E I ++  Y   A             D      I++G + RK  ++  ++  + ++  
Sbjct: 18  IVEDIFDHGAYSNLALKHQLANQSLSDKDKALVTEIVYGTISRKITLEWYLAHYIEDR-- 75

Query: 97  FSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEP-KFINAVLDKVSR 155
             RLD  +  +L   + +L     VP   I+++ V +A    +G    K +NAVL +++ 
Sbjct: 76  -DRLDKWVYYLLMLSLYQLAYLDKVPAHAIVNDAVNLAKARAHGRGADKLVNAVLRQLTN 134

Query: 156 K-----EEIKRSGCVSAIT 169
           K     + IKR     A+ 
Sbjct: 135 KPLPDIKSIKRKNKYYAVA 153


>gi|148544395|ref|YP_001271765.1| sun protein [Lactobacillus reuteri DSM 20016]
 gi|184153759|ref|YP_001842100.1| rRNA methylase [Lactobacillus reuteri JCM 1112]
 gi|227363180|ref|ZP_03847314.1| rRNA SAM-dependent methyltransferase RmsB [Lactobacillus reuteri
           MM2-3]
 gi|325682715|ref|ZP_08162231.1| RNA methyltransferase Sun [Lactobacillus reuteri MM4-1A]
 gi|148531429|gb|ABQ83428.1| sun protein [Lactobacillus reuteri DSM 20016]
 gi|183225103|dbj|BAG25620.1| rRNA methylase [Lactobacillus reuteri JCM 1112]
 gi|227071786|gb|EEI10075.1| rRNA SAM-dependent methyltransferase RmsB [Lactobacillus reuteri
           MM2-3]
 gi|324977065|gb|EGC14016.1| RNA methyltransferase Sun [Lactobacillus reuteri MM4-1A]
          Length = 449

 Score = 63.2 bits (153), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 32/147 (21%), Positives = 55/147 (37%), Gaps = 15/147 (10%)

Query: 10  LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF 69
           +K   +   AR  A+ AL           E + E   Y      +L  +      D    
Sbjct: 1   MKTKFQPQNARELALVAL-----------EGVVENGAYSNLQVDQLLKKYPLADKDRRLA 49

Query: 70  RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISE 129
             II+GV+  K  ++  ++  +  K    RLD  + ++L + + +      VP   +  E
Sbjct: 50  TNIIYGVLQHKLTLEYWLNGFIQGK----RLDPWVKTLLLSALYQYHYLERVPDWAVTDE 105

Query: 130 YVCIAHDFFYGDEPKFINAVLDKVSRK 156
            + IA         KF+  VL  + RK
Sbjct: 106 SIEIAKRRGNPGIRKFVTGVLHAILRK 132


>gi|319442113|ref|ZP_07991269.1| putative tRNA and rRNA cytosine-C5-methylase [Corynebacterium
           variabile DSM 44702]
          Length = 525

 Score = 63.2 bits (153), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 16/98 (16%), Positives = 35/98 (35%), Gaps = 3/98 (3%)

Query: 58  ESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIE 117
           E      D  +   + +G +  +  +D +I+          ++D ++   LR G  +++ 
Sbjct: 96  EQKIHGRDAAFATELTYGTLRMQGLLDAVIAEA--AGRPVDKIDAVVLDALRLGAYQIL- 152

Query: 118 CHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSR 155
              V     +   V +           F N VL  ++R
Sbjct: 153 RTRVDDHAAVDTTVELVKANGEAKASGFTNGVLRTLTR 190


>gi|328945030|gb|EGG39186.1| RNA methyltransferase Sun [Streptococcus sanguinis SK1087]
          Length = 438

 Score = 62.8 bits (152), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 32/145 (22%), Positives = 58/145 (40%), Gaps = 15/145 (10%)

Query: 12  LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71
           +  ++  AR  A++ L           E+  E   Y   A      +S     D      
Sbjct: 1   MESKQKTARWQALEIL----------EEVFEE-GAYSNIALNRALSQSPLSQADKGLVTE 49

Query: 72  IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
           +++G + RK  ++  +S  L E     +LD  L  +L   + +++    +P    + E V
Sbjct: 50  LVYGTVARKITLEWYLS-HLIEDR--DKLDNWLYILLMLSLYQMLYLDKIPQHAAVHEAV 106

Query: 132 CIAHDFFYGDEPKFINAVLDKVSRK 156
            IA     G   KF NA+L ++ R+
Sbjct: 107 EIAKIRKRG-SEKFANALLRRIERE 130


>gi|299535921|ref|ZP_07049241.1| ribosomal RNA small subunit methyltransferase B [Lysinibacillus
           fusiformis ZC1]
 gi|298728673|gb|EFI69228.1| ribosomal RNA small subunit methyltransferase B [Lysinibacillus
           fusiformis ZC1]
          Length = 453

 Score = 62.8 bits (152), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 17/91 (18%), Positives = 34/91 (37%), Gaps = 5/91 (5%)

Query: 65  DLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVE 124
           D      I +G +  K  +D  +   +        +D  +  +LR  + ++     +P  
Sbjct: 48  DRALLTEITYGTLQYKMTLDYYLEPFIRSS-----IDHWVRWLLRISLYQIHYLTRIPPH 102

Query: 125 VIISEYVCIAHDFFYGDEPKFINAVLDKVSR 155
             ++E V IA    +      +N +L  V R
Sbjct: 103 AAVNEAVEIAKRRGHRGIASMVNGILRSVLR 133


>gi|225871064|ref|YP_002747011.1| ribosomal RNA small subunit methyltransferase [Streptococcus equi
           subsp. equi 4047]
 gi|225700468|emb|CAW94888.1| putative ribosomal RNA small subunit methyltransferase
           [Streptococcus equi subsp. equi 4047]
          Length = 442

 Score = 62.8 bits (152), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 30/139 (21%), Positives = 57/139 (41%), Gaps = 9/139 (6%)

Query: 37  TTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWS 96
             E I ++  Y   A             D      I++G + RK  ++  ++  + ++  
Sbjct: 18  IVEDIFDHGAYSNLALKHQLANQFLSDKDKALVTEIVYGTISRKITLEWYLAHYIEDR-- 75

Query: 97  FSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEP-KFINAVLDKVSR 155
             RLD  +  +L   + +L     VP   I+++ V +A    +G    K +NAVL +++ 
Sbjct: 76  -DRLDKWVYYLLMLSLYQLAYLDKVPAHAIVNDAVNLAKARAHGRGADKLVNAVLRQLTN 134

Query: 156 K-----EEIKRSGCVSAIT 169
           K     + IKR     A+ 
Sbjct: 135 KPLPDIKSIKRKNKYYAVA 153


>gi|295425221|ref|ZP_06817924.1| ribosomal RNA small subunit methyltransferase B [Lactobacillus
           amylolyticus DSM 11664]
 gi|295064997|gb|EFG55902.1| ribosomal RNA small subunit methyltransferase B [Lactobacillus
           amylolyticus DSM 11664]
          Length = 447

 Score = 62.8 bits (152), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 22/102 (21%), Positives = 42/102 (41%), Gaps = 14/102 (13%)

Query: 64  VDLEWFRVIIHGVMDRKQHID----LLISSCLTEKWSFSRLDMILCSILRAGVLELIECH 119
            D      I++G +  K +++     LI S +TEK+        L  +L     +++   
Sbjct: 47  ADQNLATKIVYGTIQYKIYLEYQLHDLIKSKITEKY--------LKPLLLMSAYQILFLD 98

Query: 120 SVPVEVIISEYVCIAHDFFYGDEPKF--INAVLDKVSRKEEI 159
            VP   ++ E   +A  F       F  +N +L  ++R+  I
Sbjct: 99  KVPNRAVLDEANKLAKQFGKKHSSGFRLVNGILRSLTRRGPI 140


>gi|71894340|ref|YP_278448.1| hypothetical protein MS53_0324 [Mycoplasma synoviae 53]
 gi|71851128|gb|AAZ43737.1| hypothetical protein MS53_0324 [Mycoplasma synoviae 53]
          Length = 156

 Score = 62.8 bits (152), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 30/161 (18%), Positives = 60/161 (37%), Gaps = 34/161 (21%)

Query: 11  KLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFR 70
           K   +R   R+  +Q LYQ+++        ++  + + F  + E  +++           
Sbjct: 5   KPKTQRQK-RIEKIQILYQVEL--------LNLQKDFDFVLNMEPYLDAKQTKE------ 49

Query: 71  VIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEY 130
             +  V+    +    + S L   W++ RL  +L +IL     E      +   ++I+E 
Sbjct: 50  --VFVVLKNYDYFKNFLESLLDPSWNWQRLSYMLRAILLNACAEFEF---IDARIVINEA 104

Query: 131 VCIAHDFF---YGDEP-----------KFINAVLDKVSRKE 157
           V I   FF                   KF NA+L+   + +
Sbjct: 105 VEITKIFFQLTSDTSAKEYNSIDYNLFKFTNALLETYYKTK 145


>gi|300173591|ref|YP_003772757.1| ribosomal RNA small subunit methyltransferase B [Leuconostoc
           gasicomitatum LMG 18811]
 gi|299887970|emb|CBL91938.1| ribosomal RNA small subunit methyltransferase B [Leuconostoc
           gasicomitatum LMG 18811]
          Length = 453

 Score = 62.8 bits (152), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 22/148 (14%), Positives = 58/148 (39%), Gaps = 19/148 (12%)

Query: 12  LSHRRGIA---RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEW 68
           +S +R  +   R+ AVQ L               +   Y      ++  +      D   
Sbjct: 1   MSDKRVYSDNPRVLAVQTL------------AKIKNGAYSNLQLNQVIKQHQLSEADKRL 48

Query: 69  FRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIIS 128
              +++GV+  +   +  ++  + +K    ++D  +  +L + + ++     +P   I +
Sbjct: 49  LTTLVYGVIQHRMTFEYWLAPFVGDK----KIDAWVRELLYSAIFQMKFLDKIPEHAIFN 104

Query: 129 EYVCIAHDFFYGDEPKFINAVLDKVSRK 156
           E + +A    +    K++ A+L  + R+
Sbjct: 105 ESIEVAKILGHVGTGKYVTAILHNIGRQ 132


>gi|301321426|gb|ADK70069.1| ribosomal RNA small subunit methyltransferase B [Mycoplasma
           mycoides subsp. mycoides SC str. Gladysdale]
          Length = 423

 Score = 62.8 bits (152), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 24/94 (25%), Positives = 47/94 (50%), Gaps = 7/94 (7%)

Query: 66  LEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILC-SILRAGVLELIECHSVPVE 124
            ++   ++HGV+  K H+D L++  +  K +      I    IL   + ++I  +S+P  
Sbjct: 38  KDFIFNLVHGVISNKIHLDYLLTKLIDVKKT-----SIDLQIILLISLYQMIYLNSIPNY 92

Query: 125 VIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEE 158
            I++E V +        +  FINA+L+K  R ++
Sbjct: 93  AIVNESVNLIKT-TSQKQANFINAILNKFLRFKD 125


>gi|322388304|ref|ZP_08061908.1| RNA methyltransferase Sun [Streptococcus infantis ATCC 700779]
 gi|321140976|gb|EFX36477.1| RNA methyltransferase Sun [Streptococcus infantis ATCC 700779]
          Length = 437

 Score = 62.8 bits (152), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 30/139 (21%), Positives = 56/139 (40%), Gaps = 15/139 (10%)

Query: 18  IARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVM 77
            AR  A++ L           E +   + Y   A  +    S     D      +++G +
Sbjct: 6   TARNLALKVL-----------EDVFVNQAYSNIALNKHLKGSQLSATDKGLVTELVYGTV 54

Query: 78  DRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDF 137
            RK  ++  +S  + ++    +LD  L  +L   V +L     +P   +++E V IA   
Sbjct: 55  ARKLTLEWYLSHFIEDR---DKLDSWLYILLLMSVYQLEYLDKLPDHAVVNESVEIAK-L 110

Query: 138 FYGDEPKFINAVLDKVSRK 156
                 K +NAVL ++ R+
Sbjct: 111 RKKGSEKLVNAVLRRILRE 129


>gi|332358059|gb|EGJ35892.1| RNA methyltransferase Sun [Streptococcus sanguinis SK1056]
          Length = 438

 Score = 62.8 bits (152), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 31/145 (21%), Positives = 58/145 (40%), Gaps = 15/145 (10%)

Query: 12  LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71
           +  ++  AR  A++ L           E+  E   Y   A      +S     D      
Sbjct: 1   MESKQKTARWQALEIL----------EEVFEE-GAYSNIALNRALSQSPLSQADKGLVTE 49

Query: 72  IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
           +++G + RK  ++  +S  L E     +LD  L  +L   + +++    +P    + E +
Sbjct: 50  LVYGTVARKITLEWYLS-HLIEDR--DKLDNWLYILLMLSLYQMLYLDKIPQHAAVHEAI 106

Query: 132 CIAHDFFYGDEPKFINAVLDKVSRK 156
            IA     G   KF NA+L ++ R+
Sbjct: 107 EIAKIRKRG-SEKFANALLRRIERE 130


>gi|42560767|ref|NP_975218.1| Sun family protein [Mycoplasma mycoides subsp. mycoides SC str.
           PG1]
 gi|42492263|emb|CAE76860.1| Sun family protein [Mycoplasma mycoides subsp. mycoides SC str.
           PG1]
          Length = 432

 Score = 62.8 bits (152), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 24/94 (25%), Positives = 47/94 (50%), Gaps = 7/94 (7%)

Query: 66  LEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILC-SILRAGVLELIECHSVPVE 124
            ++   ++HGV+  K H+D L++  +  K +      I    IL   + ++I  +S+P  
Sbjct: 47  KDFIFNLVHGVISNKIHLDYLLTKLIDVKKT-----SIDLQIILLISLYQMIYLNSIPNY 101

Query: 125 VIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEE 158
            I++E V +        +  FINA+L+K  R ++
Sbjct: 102 AIVNESVNLIKT-TSQKQANFINAILNKFLRFKD 134


>gi|324991771|gb|EGC23703.1| RNA methyltransferase Sun [Streptococcus sanguinis SK353]
          Length = 438

 Score = 62.8 bits (152), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 31/145 (21%), Positives = 58/145 (40%), Gaps = 15/145 (10%)

Query: 12  LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71
           +  ++  AR  A++ L           E+  E   Y   A      +S     D      
Sbjct: 1   MESKQKTARWQALEIL----------EEVFEE-GAYSNIALNRALSQSPLSQADKGLVTE 49

Query: 72  IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
           +++G + RK  ++  +S  L E     +LD  L  +L   + +++    +P    + E +
Sbjct: 50  LVYGTVARKITLEWYLS-HLIEDR--DKLDNWLYILLMLSLYQMLYLDKIPQHAAVHEAI 106

Query: 132 CIAHDFFYGDEPKFINAVLDKVSRK 156
            IA     G   KF NA+L ++ R+
Sbjct: 107 EIAKIRKRG-SEKFANALLRRIERE 130


>gi|282882115|ref|ZP_06290756.1| ribosomal RNA small subunit methyltransferase B [Peptoniphilus
           lacrimalis 315-B]
 gi|281298145|gb|EFA90600.1| ribosomal RNA small subunit methyltransferase B [Peptoniphilus
           lacrimalis 315-B]
          Length = 430

 Score = 62.8 bits (152), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 22/101 (21%), Positives = 45/101 (44%), Gaps = 2/101 (1%)

Query: 58  ESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIE 117
           +S     D  + + I  GV+  + ++D +I   +  K  F ++  I+  IL   + +   
Sbjct: 31  QSNISDRDFTFIKNITTGVIRNRTYLDYVIK--INSKIRFKKIHKIIAIILEMAIYQYYF 88

Query: 118 CHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEE 158
              +P   I+ E V +A  +       F+NA+L  +  K++
Sbjct: 89  LDKIPNYSIVDESVKLAKLYGNKGSSSFVNAILRNIVSKDK 129


>gi|325686917|gb|EGD28941.1| RNA methyltransferase Sun [Streptococcus sanguinis SK72]
 gi|327467211|gb|EGF12715.1| RNA methyltransferase Sun [Streptococcus sanguinis SK330]
          Length = 438

 Score = 62.8 bits (152), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 31/145 (21%), Positives = 58/145 (40%), Gaps = 15/145 (10%)

Query: 12  LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71
           +  ++  AR  A++ L           E+  E   Y   A      +S     D      
Sbjct: 1   MESKQKTARWQALEIL----------EEVFEE-GAYSNIALNRALSQSPLSQADKGLVTE 49

Query: 72  IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
           +++G + RK  ++  +S  L E     +LD  L  +L   + +++    +P    + E +
Sbjct: 50  LVYGTVARKITLEWYLS-HLIEDR--DKLDNWLYILLMLSLYQMLYLDKIPQHAAVHEAI 106

Query: 132 CIAHDFFYGDEPKFINAVLDKVSRK 156
            IA     G   KF NA+L ++ R+
Sbjct: 107 EIAKIRKRG-SEKFANALLRRIERE 130


>gi|306829015|ref|ZP_07462206.1| ribosomal RNA small subunit methyltransferase B [Streptococcus
           mitis ATCC 6249]
 gi|304428820|gb|EFM31909.1| ribosomal RNA small subunit methyltransferase B [Streptococcus
           mitis ATCC 6249]
          Length = 437

 Score = 62.8 bits (152), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 36/157 (22%), Positives = 61/157 (38%), Gaps = 20/157 (12%)

Query: 18  IARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVM 77
            AR  A+  L           E +   + Y   A  +    S     D      I++G +
Sbjct: 6   TARNLALAVL-----------EDVFVNQAYSNIALNKHLKGSQLSAADKGLVTEIVYGTV 54

Query: 78  DRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDF 137
            RK  ++  +S  + ++    +LD  L  +L     ++     VP   +++E V IA   
Sbjct: 55  ARKLTLEWYLSHFIQDR---DKLDNWLYVLLLMSAYQVRFLDKVPDHAVVNEAVEIAKAR 111

Query: 138 FYGDEPKFINAVLDKVSRK-----EEIKRSGCVSAIT 169
             G   K +NAVL ++ R+     E IKR     +I 
Sbjct: 112 KKG-SEKLVNAVLRRILREGWPDFETIKRKNKRDSIA 147


>gi|194466505|ref|ZP_03072492.1| sun protein [Lactobacillus reuteri 100-23]
 gi|194453541|gb|EDX42438.1| sun protein [Lactobacillus reuteri 100-23]
          Length = 449

 Score = 62.8 bits (152), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 32/147 (21%), Positives = 55/147 (37%), Gaps = 15/147 (10%)

Query: 10  LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF 69
           +K   +   AR  A+ AL           E + E   Y      +L  +      D    
Sbjct: 1   MKTKFQPQNARELALVAL-----------EGVVENGAYSNLQVDQLLKKYPLADKDRRLA 49

Query: 70  RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISE 129
             II+GV+  K  ++  ++  +  K    RLD  + ++L + + +      VP   +  E
Sbjct: 50  TNIIYGVLQHKLTLEYWLNGFVQGK----RLDPWVKTLLLSALYQYHYLERVPDWAVTDE 105

Query: 130 YVCIAHDFFYGDEPKFINAVLDKVSRK 156
            + IA         KF+  VL  + RK
Sbjct: 106 SIEIAKRRGNPGIRKFVTGVLHAILRK 132


>gi|168011444|ref|XP_001758413.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162690448|gb|EDQ76815.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 207

 Score = 62.8 bits (152), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 33/185 (17%), Positives = 57/185 (30%), Gaps = 47/185 (25%)

Query: 17  GIARLAAVQALYQIDIIGCST--------------------------------TEIISEY 44
             AR  A+  LY   + G                                     ++ E 
Sbjct: 24  RAARELALSVLYAAFVSGVHPLKVFEDRVKQRVVANSFDKTLLEGYEHRPDVGENVVVED 83

Query: 45  ETYRFCADTELDVES-------------VYLHVDLEWFRVIIHGVMDRKQHIDLLISSCL 91
           E      +  LD E+             VY    L   R ++     R    + ++   +
Sbjct: 84  EATAMALEEALDAEASLEASVLTAPPPLVYNSFALRLARTLVKETAYRWLQQEAILMEII 143

Query: 92  TEKWSFS-RLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVL 150
             KW    +  ++   +L+  + E+ E   VP  V+++E V +A  F     P+ IN  L
Sbjct: 144 PLKWKVQPKAALLQICVLQMALAEI-EATDVPPRVVVNEAVELAKRFCDLAAPRIINGCL 202

Query: 151 DKVSR 155
               R
Sbjct: 203 GSYIR 207


>gi|324994072|gb|EGC25986.1| RNA methyltransferase Sun [Streptococcus sanguinis SK678]
 gi|327459278|gb|EGF05624.1| RNA methyltransferase Sun [Streptococcus sanguinis SK1]
 gi|327472704|gb|EGF18131.1| RNA methyltransferase Sun [Streptococcus sanguinis SK408]
 gi|327490496|gb|EGF22277.1| RNA methyltransferase Sun [Streptococcus sanguinis SK1058]
          Length = 438

 Score = 62.8 bits (152), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 30/145 (20%), Positives = 60/145 (41%), Gaps = 15/145 (10%)

Query: 12  LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71
           +  ++  AR   ++ L           E+  E        +  L+ +S+    D      
Sbjct: 1   MESKQKTARWQVLEIL----------EEVFEEGAYSNIALNRALN-QSLLSQADKGLVTE 49

Query: 72  IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
           +++G + RK  ++  +S  L E     +LD  L  +L   + +++    +P    + E V
Sbjct: 50  LVYGTVARKITLEWYLS-HLIEDR--DKLDNWLYILLMLSLYQMLYLDKIPQHATVHEAV 106

Query: 132 CIAHDFFYGDEPKFINAVLDKVSRK 156
            IA     G   KF+NA+L ++ R+
Sbjct: 107 EIAKIRKRG-SEKFVNALLRRIERE 130


>gi|225868018|ref|YP_002743966.1| ribosomal RNA small subunit methyltransferase [Streptococcus equi
           subsp. zooepidemicus]
 gi|225701294|emb|CAW98294.1| putative ribosomal RNA small subunit methyltransferase
           [Streptococcus equi subsp. zooepidemicus]
          Length = 442

 Score = 62.4 bits (151), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 30/139 (21%), Positives = 57/139 (41%), Gaps = 9/139 (6%)

Query: 37  TTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWS 96
             E I ++  Y   A             D      I++G + RK  ++  ++  + ++  
Sbjct: 18  IVEDIFDHGAYSNLALKHQLANQSLSDKDKALVTEIVYGTISRKITLEWYLAHYIEDR-- 75

Query: 97  FSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEP-KFINAVLDKVSR 155
             RLD  +  +L   + +L     VP   I+++ V +A    +G    K +NAVL +++ 
Sbjct: 76  -DRLDKWVYYLLMLSLYQLAYLDKVPAHAIVNDAVNLAKARTHGRGADKLVNAVLRQLTN 134

Query: 156 K-----EEIKRSGCVSAIT 169
           K     + IKR     A+ 
Sbjct: 135 KPLPDIKSIKRKNKYYAVA 153


>gi|332710036|ref|ZP_08429991.1| ribosomal RNA small subunit methyltransferase RsmB [Lyngbya
           majuscula 3L]
 gi|332351179|gb|EGJ30764.1| ribosomal RNA small subunit methyltransferase RsmB [Lyngbya
           majuscula 3L]
          Length = 477

 Score = 62.4 bits (151), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 23/136 (16%), Positives = 49/136 (36%), Gaps = 13/136 (9%)

Query: 20  RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79
           R  A  AL             I     +   A   +   +     D      +++G + R
Sbjct: 15  RQLAFLAL-----------RDIHRRGAFADIALNRVLHNAQLTGADRGLVTELVYGSVRR 63

Query: 80  KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139
           ++ +D L+     +K   ++    L +IL  G+ +L     +P    ++  V +A +  +
Sbjct: 64  QRTLDALLDQLGKKK--ANQQPPDLRTILHLGLYQLRYQGRIPASAAVNTTVDLAKNNGF 121

Query: 140 GDEPKFINAVLDKVSR 155
                 +N +L   +R
Sbjct: 122 KGLAGVVNGLLRNYAR 137


>gi|191638611|ref|YP_001987777.1| RRNA methylase (Putative) [Lactobacillus casei BL23]
 gi|190712913|emb|CAQ66919.1| RRNA methylase (Putative) [Lactobacillus casei BL23]
 gi|327382653|gb|AEA54129.1| Ribosomal RNA small subunit methyltransferase B [Lactobacillus
           casei LC2W]
 gi|327385847|gb|AEA57321.1| Ribosomal RNA small subunit methyltransferase B [Lactobacillus
           casei BD-II]
          Length = 446

 Score = 62.4 bits (151), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 18/106 (16%), Positives = 41/106 (38%), Gaps = 5/106 (4%)

Query: 65  DLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVE 124
           D      I++GV+  +  +D  ++  +  +    +LD  +  +L   V +L     VP  
Sbjct: 41  DAGLLTNIVYGVIQHQLTLDFYLAPFIKGR----KLDNWIRCLLDIAVYQLQYLDKVPAR 96

Query: 125 VIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRSGCVSAITQ 170
            +  +   IA    +    KF+  VL   +++        ++   +
Sbjct: 97  AVFFDSTEIAKKLGHQGIAKFVTGVLRN-AQRTGFPDPAAIADPVK 141


>gi|256832544|ref|YP_003161271.1| Fmu (Sun) domain-containing protein [Jonesia denitrificans DSM
           20603]
 gi|256686075|gb|ACV08968.1| Fmu (Sun) domain protein [Jonesia denitrificans DSM 20603]
          Length = 517

 Score = 62.4 bits (151), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 34/157 (21%), Positives = 60/157 (38%), Gaps = 17/157 (10%)

Query: 1   MTIQDNKKDLKLSHRRGI---ARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDV 57
           M    ++  +  S RR     AR  A + L Q           +++ + Y          
Sbjct: 41  MRQAGHRSQVAPSQRRSRSTTARQVAFEVLRQ-----------VADSDAYANLVLPPALR 89

Query: 58  ESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIE 117
            +     D  +   + +G +  +   D +I++  T       +D  +   LR GV +++ 
Sbjct: 90  RARLEGRDAGFATELAYGTLRMRGLYDAIIAAHTTR--PLEDIDSAVLDCLRLGVHQIVS 147

Query: 118 CHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVS 154
              VP    +SE V +A D       +FINAVL  +S
Sbjct: 148 MR-VPAHAAVSETVGVARDNIGAGPAQFINAVLRSIS 183


>gi|227549211|ref|ZP_03979260.1| possible rRNA SAM-dependent methyltransferase RmsB [Corynebacterium
           lipophiloflavum DSM 44291]
 gi|227078665|gb|EEI16628.1| possible rRNA SAM-dependent methyltransferase RmsB [Corynebacterium
           lipophiloflavum DSM 44291]
          Length = 480

 Score = 62.4 bits (151), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 29/164 (17%), Positives = 53/164 (32%), Gaps = 24/164 (14%)

Query: 2   TIQDNKKDLKLSHRRGI----------ARLAAVQALYQIDIIGCSTTEIISEYETYRFCA 51
             +D+    K   RR            AR AA                 ++  + Y    
Sbjct: 15  NNRDSGHRSKPQPRREAQATPARIGDSAREAAF-----------EVVHRVATDDAYANLV 63

Query: 52  DTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAG 111
              L  E      D  +   + +G +  +  +D +I+ C + +     +   + + LR G
Sbjct: 64  LPNLLRERSITGRDAAFATELAYGTLRAQGVLDAVIARCSSRE--LGDIAPEVLAALRLG 121

Query: 112 VLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSR 155
             +L+    V     +   V +      G    F NA+L  +SR
Sbjct: 122 AYQLLYMR-VDDHAAVDTSVRLVEAAGAGKAKGFANAILRTISR 164


>gi|31792601|ref|NP_855094.1| Fmu protein (SUN protein) [Mycobacterium bovis AF2122/97]
 gi|121637337|ref|YP_977560.1| putative fmu protein [Mycobacterium bovis BCG str. Pasteur 1173P2]
 gi|215426744|ref|ZP_03424663.1| putative fmu protein [Mycobacterium tuberculosis T92]
 gi|219557310|ref|ZP_03536386.1| putative fmu protein [Mycobacterium tuberculosis T17]
 gi|224989812|ref|YP_002644499.1| putative fmu protein [Mycobacterium bovis BCG str. Tokyo 172]
 gi|260186346|ref|ZP_05763820.1| putative fmu protein [Mycobacterium tuberculosis CPHL_A]
 gi|260200462|ref|ZP_05767953.1| putative fmu protein [Mycobacterium tuberculosis T46]
 gi|260204672|ref|ZP_05772163.1| putative fmu protein [Mycobacterium tuberculosis K85]
 gi|289442852|ref|ZP_06432596.1| SUN protein [Mycobacterium tuberculosis T46]
 gi|289447003|ref|ZP_06436747.1| SUN protein [Mycobacterium tuberculosis CPHL_A]
 gi|289569424|ref|ZP_06449651.1| SUN protein [Mycobacterium tuberculosis T17]
 gi|289574076|ref|ZP_06454303.1| SUN protein [Mycobacterium tuberculosis K85]
 gi|289749965|ref|ZP_06509343.1| SUN protein [Mycobacterium tuberculosis T92]
 gi|31618190|emb|CAD94303.1| PROBABLE FMU PROTEIN (SUN PROTEIN) [Mycobacterium bovis AF2122/97]
 gi|121492984|emb|CAL71455.1| Probable fmu protein [Mycobacterium bovis BCG str. Pasteur 1173P2]
 gi|224772925|dbj|BAH25731.1| putative fmu protein [Mycobacterium bovis BCG str. Tokyo 172]
 gi|289415771|gb|EFD13011.1| SUN protein [Mycobacterium tuberculosis T46]
 gi|289419961|gb|EFD17162.1| SUN protein [Mycobacterium tuberculosis CPHL_A]
 gi|289538507|gb|EFD43085.1| SUN protein [Mycobacterium tuberculosis K85]
 gi|289543178|gb|EFD46826.1| SUN protein [Mycobacterium tuberculosis T17]
 gi|289690552|gb|EFD57981.1| SUN protein [Mycobacterium tuberculosis T92]
          Length = 457

 Score = 62.0 bits (150), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 31/152 (20%), Positives = 55/152 (36%), Gaps = 14/152 (9%)

Query: 19  ARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMD 78
           AR AA + L             +S  + Y       L  +      D  +   + +G   
Sbjct: 16  ARRAAFETL-----------RAVSARDAYANLVLPALLAQRGIGGRDAAFATELTYGTCR 64

Query: 79  RKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFF 138
            +  +D +I +      S   +D +L  +LR G  +L+    V     +S  V  A   F
Sbjct: 65  ARGLLDAVIGAAAER--SPQAIDPVLLDLLRLGTYQLL-RTRVDAHAAVSTTVEQAGIEF 121

Query: 139 YGDEPKFINAVLDKVSRKEEIKRSGCVSAITQ 170
                 F+N VL  ++ ++E    G ++   Q
Sbjct: 122 DSARAGFVNGVLRTIAGRDERSWVGELAPDAQ 153


>gi|15608545|ref|NP_215923.1| Fmu protein (SUN protein) [Mycobacterium tuberculosis H37Rv]
 gi|15840865|ref|NP_335902.1| sun protein [Mycobacterium tuberculosis CDC1551]
 gi|148661198|ref|YP_001282721.1| Fmu protein [Mycobacterium tuberculosis H37Ra]
 gi|148822627|ref|YP_001287381.1| fmu protein (sun protein) [Mycobacterium tuberculosis F11]
 gi|167968446|ref|ZP_02550723.1| fmu protein (sun protein) [Mycobacterium tuberculosis H37Ra]
 gi|215411052|ref|ZP_03419860.1| fmu protein (sun protein) [Mycobacterium tuberculosis 94_M4241A]
 gi|215445594|ref|ZP_03432346.1| fmu protein (sun protein) [Mycobacterium tuberculosis T85]
 gi|218753116|ref|ZP_03531912.1| fmu protein (sun protein) [Mycobacterium tuberculosis GM 1503]
 gi|253799543|ref|YP_003032544.1| SUN protein [Mycobacterium tuberculosis KZN 1435]
 gi|254231649|ref|ZP_04924976.1| fmu protein (sun protein) [Mycobacterium tuberculosis C]
 gi|254364290|ref|ZP_04980336.1| fmu protein (sun protein) [Mycobacterium tuberculosis str. Haarlem]
 gi|254550421|ref|ZP_05140868.1| SUN protein [Mycobacterium tuberculosis '98-R604 INH-RIF-EM']
 gi|289554802|ref|ZP_06444012.1| SUN protein [Mycobacterium tuberculosis KZN 605]
 gi|289757513|ref|ZP_06516891.1| fmu protein [Mycobacterium tuberculosis T85]
 gi|289761566|ref|ZP_06520944.1| fmu protein (sun protein) [Mycobacterium tuberculosis GM 1503]
 gi|294994969|ref|ZP_06800660.1| SUN protein [Mycobacterium tuberculosis 210]
 gi|297633963|ref|ZP_06951743.1| SUN protein [Mycobacterium tuberculosis KZN 4207]
 gi|297730952|ref|ZP_06960070.1| SUN protein [Mycobacterium tuberculosis KZN R506]
 gi|298524913|ref|ZP_07012322.1| fmu protein (sun protein) [Mycobacterium tuberculosis 94_M4241A]
 gi|306775590|ref|ZP_07413927.1| SUN protein [Mycobacterium tuberculosis SUMu001]
 gi|306780738|ref|ZP_07419075.1| SUN protein [Mycobacterium tuberculosis SUMu002]
 gi|306788507|ref|ZP_07426829.1| SUN protein [Mycobacterium tuberculosis SUMu004]
 gi|306792830|ref|ZP_07431132.1| SUN protein [Mycobacterium tuberculosis SUMu005]
 gi|306807307|ref|ZP_07443975.1| SUN protein [Mycobacterium tuberculosis SUMu007]
 gi|306967506|ref|ZP_07480167.1| SUN protein [Mycobacterium tuberculosis SUMu009]
 gi|306971698|ref|ZP_07484359.1| SUN protein [Mycobacterium tuberculosis SUMu010]
 gi|307079408|ref|ZP_07488578.1| SUN protein [Mycobacterium tuberculosis SUMu011]
 gi|307083976|ref|ZP_07493089.1| SUN protein [Mycobacterium tuberculosis SUMu012]
 gi|313658285|ref|ZP_07815165.1| SUN protein [Mycobacterium tuberculosis KZN V2475]
 gi|2829532|sp|P71675|Y1407_MYCTU RecName: Full=Putative methyltransferase Rv1407/MT1451
 gi|1542915|emb|CAB02186.1| PROBABLE FMU PROTEIN (SUN PROTEIN) [Mycobacterium tuberculosis
           H37Rv]
 gi|13881065|gb|AAK45716.1| sun protein [Mycobacterium tuberculosis CDC1551]
 gi|124600708|gb|EAY59718.1| fmu protein (sun protein) [Mycobacterium tuberculosis C]
 gi|134149804|gb|EBA41849.1| fmu protein (sun protein) [Mycobacterium tuberculosis str. Haarlem]
 gi|148505350|gb|ABQ73159.1| Fmu protein [Mycobacterium tuberculosis H37Ra]
 gi|148721154|gb|ABR05779.1| fmu protein (sun protein) [Mycobacterium tuberculosis F11]
 gi|253321046|gb|ACT25649.1| SUN protein [Mycobacterium tuberculosis KZN 1435]
 gi|289439434|gb|EFD21927.1| SUN protein [Mycobacterium tuberculosis KZN 605]
 gi|289709072|gb|EFD73088.1| fmu protein (sun protein) [Mycobacterium tuberculosis GM 1503]
 gi|289713077|gb|EFD77089.1| fmu protein [Mycobacterium tuberculosis T85]
 gi|298494707|gb|EFI30001.1| fmu protein (sun protein) [Mycobacterium tuberculosis 94_M4241A]
 gi|308215901|gb|EFO75300.1| SUN protein [Mycobacterium tuberculosis SUMu001]
 gi|308326397|gb|EFP15248.1| SUN protein [Mycobacterium tuberculosis SUMu002]
 gi|308334896|gb|EFP23747.1| SUN protein [Mycobacterium tuberculosis SUMu004]
 gi|308338705|gb|EFP27556.1| SUN protein [Mycobacterium tuberculosis SUMu005]
 gi|308346230|gb|EFP35081.1| SUN protein [Mycobacterium tuberculosis SUMu007]
 gi|308354824|gb|EFP43675.1| SUN protein [Mycobacterium tuberculosis SUMu009]
 gi|308358774|gb|EFP47625.1| SUN protein [Mycobacterium tuberculosis SUMu010]
 gi|308362711|gb|EFP51562.1| SUN protein [Mycobacterium tuberculosis SUMu011]
 gi|308366378|gb|EFP55229.1| SUN protein [Mycobacterium tuberculosis SUMu012]
 gi|323720071|gb|EGB29177.1| SUN protein [Mycobacterium tuberculosis CDC1551A]
 gi|326903028|gb|EGE49961.1| SUN protein [Mycobacterium tuberculosis W-148]
 gi|328459291|gb|AEB04714.1| SUN protein [Mycobacterium tuberculosis KZN 4207]
          Length = 457

 Score = 62.0 bits (150), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 31/152 (20%), Positives = 55/152 (36%), Gaps = 14/152 (9%)

Query: 19  ARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMD 78
           AR AA + L             +S  + Y       L  +      D  +   + +G   
Sbjct: 16  ARRAAFETL-----------RAVSARDAYANLVLPALLAQRGIGGRDAAFATELTYGTCR 64

Query: 79  RKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFF 138
            +  +D +I +      S   +D +L  +LR G  +L+    V     +S  V  A   F
Sbjct: 65  ARGLLDAVIGAAAER--SPQAIDPVLLDLLRLGTYQLL-RTRVDAHAAVSTTVEQAGIEF 121

Query: 139 YGDEPKFINAVLDKVSRKEEIKRSGCVSAITQ 170
                 F+N VL  ++ ++E    G ++   Q
Sbjct: 122 DSARAGFVNGVLRTIAGRDERSWVGELAPDAQ 153


>gi|256827223|ref|YP_003151182.1| tRNA/rRNA cytosine-C5-methylase [Cryptobacterium curtum DSM 15641]
 gi|256583366|gb|ACU94500.1| tRNA/rRNA cytosine-C5-methylase [Cryptobacterium curtum DSM 15641]
          Length = 500

 Score = 62.0 bits (150), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 30/140 (21%), Positives = 49/140 (35%), Gaps = 18/140 (12%)

Query: 19  ARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMD 78
           AR  AV                  E + +          +S     D  + RV++ GV+ 
Sbjct: 7   ARRLAV-----------EIGRDARERKAFASDLLDARLGKSGLNAADRAFTRVLVLGVVA 55

Query: 79  RKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFF 138
               +D +I  CL          + L   LR    E+I  +     V + + V +A  F 
Sbjct: 56  TVGTLDEVIGRCLDRAGDV---GLQLRDALRVSTYEIIFLNKDAY-VAVDQGVELA-AFV 110

Query: 139 YGDEPKFINAVLDKV--SRK 156
                +  NAVL ++  +RK
Sbjct: 111 QPRARRLANAVLRRIMAARK 130


>gi|219114260|ref|XP_002176301.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
 gi|217402704|gb|EEC42693.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
          Length = 413

 Score = 62.0 bits (150), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 34/148 (22%), Positives = 60/148 (40%), Gaps = 17/148 (11%)

Query: 17  GIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGV 76
             AR  A +AL    I    +    + +   R  ++      S     D  + R+++   
Sbjct: 75  RNARFLAARAL----ITKTGS----AAFAVDRLESNKHY---STLSTRDRSFARLLVTTT 123

Query: 77  MDRKQHIDLLISSCLTE-KWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCI-- 133
             R   ID ++  C  E K   +R+D  + + LR G  +L+    VP    + E V +  
Sbjct: 124 ERRLGQIDEVLRQCQKETKSRPNRVDQFVQAALRIGATQLLFLK-VPEHAAVKETVELLR 182

Query: 134 --AHDFFYGDEPKFINAVLDKVSRKEEI 159
                       KF+NAVL ++SR+ ++
Sbjct: 183 HDPKTTVPESRIKFVNAVLRRISREGDV 210


>gi|159030883|emb|CAO88564.1| unnamed protein product [Microcystis aeruginosa PCC 7806]
          Length = 446

 Score = 62.0 bits (150), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 24/139 (17%), Positives = 50/139 (35%), Gaps = 13/139 (9%)

Query: 17  GIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGV 76
             AR  A+  L  ID         +  + +            S    +D      I++G+
Sbjct: 2   NNARQLALLILRDIDRSSAYPDRALDRHLS-----------ASSLNCLDKALTTEIVYGI 50

Query: 77  MDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHD 136
           + R++ +D L+     +  + ++    L  IL  G+ +L     +P    ++  V +   
Sbjct: 51  VRRQRTLDALLDRLGKK--TAAQQPPDLRRILHIGLYQLRYLSQIPPSAAVNTAVELTKI 108

Query: 137 FFYGDEPKFINAVLDKVSR 155
              G     +N +L +  R
Sbjct: 109 SHLGKLAAVVNGMLRQYLR 127


>gi|54025577|ref|YP_119819.1| putative RNA-binding Sun protein [Nocardia farcinica IFM 10152]
 gi|54017085|dbj|BAD58455.1| putative RNA-binding Sun protein [Nocardia farcinica IFM 10152]
          Length = 627

 Score = 62.0 bits (150), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 31/156 (19%), Positives = 60/156 (38%), Gaps = 18/156 (11%)

Query: 4   QDNKKDLKLSHRRGIA--RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVY 61
           +  +   K +  R I   R  A++ L             + E   Y      +L  +   
Sbjct: 172 RPGRTGPKNAAGRSIDPPREVALEVL-----------RAVRERAAYANLVLPKLLRDRRI 220

Query: 62  LHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSV 121
              D      + +G    +  +D +I++C       +++D  L  +LR GV +L+    +
Sbjct: 221 DGRDAALATELAYGACRAQGLLDAVIAAC--AGRPVAQIDGPLLDVLRLGVYQLL-RTRI 277

Query: 122 PVEVIISEYVCIAH-DFFYGDEPKFINAVLDKVSRK 156
                +   V +A  +F  G    F+NAVL + +R+
Sbjct: 278 GAHAAVDTSVGLARAEFGAGKS-GFVNAVLRQAARR 312


>gi|300814531|ref|ZP_07094787.1| NusB family protein [Peptoniphilus sp. oral taxon 836 str. F0141]
 gi|300511358|gb|EFK38602.1| NusB family protein [Peptoniphilus sp. oral taxon 836 str. F0141]
          Length = 238

 Score = 62.0 bits (150), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 22/102 (21%), Positives = 46/102 (45%), Gaps = 2/102 (1%)

Query: 58  ESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIE 117
           +S     D  + + I  GV+  + ++D +I   +  K  F ++  I+  IL   + +   
Sbjct: 31  QSNISDRDFTFVKNITTGVIRNRTYLDYVIK--INSKIRFKKIHKIIAIILEMAIYQCYF 88

Query: 118 CHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEI 159
              +P   I+ E V +A  +       F+NA+L  +  K+++
Sbjct: 89  LDKIPNYSIVDESVKLAKLYGNKGSSSFVNAILRNIVSKDKV 130


>gi|282895327|ref|ZP_06303529.1| Fmu, rRNA SAM-dependent methyltransferase [Raphidiopsis brookii D9]
 gi|281199633|gb|EFA74493.1| Fmu, rRNA SAM-dependent methyltransferase [Raphidiopsis brookii D9]
          Length = 465

 Score = 62.0 bits (150), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 27/139 (19%), Positives = 49/139 (35%), Gaps = 14/139 (10%)

Query: 20  RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79
           R  A  AL ++   G      I         +D            D      +++G + R
Sbjct: 26  RQIAFTALREVH-RGAYADIAIDRTLQKFKLSDH-----------DRRLMTELVYGSVRR 73

Query: 80  KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139
           ++ +D +I     +K         L  IL  G+ +L     +PV   ++  V +A +  +
Sbjct: 74  QRSLDAIIDQIADKKSQQQ--PRDLRCILHLGLYQLRYQQKIPVSAAVNTTVQLAKENGF 131

Query: 140 GDEPKFINAVLDKVSRKEE 158
                F+N  L +  R  E
Sbjct: 132 PGLTGFVNGFLRQYIRLLE 150


>gi|315656712|ref|ZP_07909599.1| ribosomal RNA small subunit methyltransferase B [Mobiluncus
           curtisii subsp. holmesii ATCC 35242]
 gi|315492667|gb|EFU82271.1| ribosomal RNA small subunit methyltransferase B [Mobiluncus
           curtisii subsp. holmesii ATCC 35242]
          Length = 520

 Score = 62.0 bits (150), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 31/139 (22%), Positives = 52/139 (37%), Gaps = 14/139 (10%)

Query: 15  RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74
           RR  AR  A QAL             + +   Y       L   +     D  +   +++
Sbjct: 42  RRDPARDVAFQAL-----------RRVDQDHAYANLVLPGLIERARLHRRDAAFATELVY 90

Query: 75  GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134
           G +  +   D +I   L      + LD  L ++LR G+ ++++   V     +   V +A
Sbjct: 91  GTLRLQGRYDAIIG--LLSDRDIAALDPELVTVLRMGIHQILQMR-VEDYAAVDTMVDLA 147

Query: 135 HDFFYGDEPKFINAVLDKV 153
            D         +NAVL KV
Sbjct: 148 RDRLSAGPAGMVNAVLRKV 166


>gi|309389024|gb|ADO76904.1| sun protein [Halanaerobium praevalens DSM 2228]
          Length = 449

 Score = 62.0 bits (150), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 27/99 (27%), Positives = 39/99 (39%), Gaps = 5/99 (5%)

Query: 63  HVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVP 122
             D   F  I +GV+  K ++D +I+     K S  ++D  +   LR GV +L     VP
Sbjct: 35  KRDKNLFTEIYYGVIRNKLYLDYIINQF--SKTSLLKMDSEVLMGLRIGVYQLFFLDKVP 92

Query: 123 VEVIISEYVCIAHDF---FYGDEPKFINAVLDKVSRKEE 158
               I E V                F N VL  ++RK  
Sbjct: 93  ARAAIYESVEAVKIILPASQKGAISFTNGVLRNINRKRN 131


>gi|306784137|ref|ZP_07422459.1| SUN protein [Mycobacterium tuberculosis SUMu003]
 gi|306797229|ref|ZP_07435531.1| SUN protein [Mycobacterium tuberculosis SUMu006]
 gi|306803111|ref|ZP_07439779.1| SUN protein [Mycobacterium tuberculosis SUMu008]
 gi|308331083|gb|EFP19934.1| SUN protein [Mycobacterium tuberculosis SUMu003]
 gi|308342392|gb|EFP31243.1| SUN protein [Mycobacterium tuberculosis SUMu006]
 gi|308350182|gb|EFP39033.1| SUN protein [Mycobacterium tuberculosis SUMu008]
          Length = 457

 Score = 62.0 bits (150), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 31/152 (20%), Positives = 55/152 (36%), Gaps = 14/152 (9%)

Query: 19  ARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMD 78
           AR AA + L             +S  + Y       L  +      D  +   + +G   
Sbjct: 16  ARRAAFETL-----------RAVSARDAYANLVLPALLAQRGIGGRDAAFATELTYGTCR 64

Query: 79  RKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFF 138
            +  +D +I +      S   +D +L  +LR G  +L+    V     +S  V  A   F
Sbjct: 65  ARGLLDAVIGAAAER--SPQAIDPVLLDLLRLGTYQLL-RTRVDAHAAVSTTVEQAGIEF 121

Query: 139 YGDEPKFINAVLDKVSRKEEIKRSGCVSAITQ 170
                 F+N VL  ++ ++E    G ++   Q
Sbjct: 122 DSARAGFVNGVLRTIAGRDERSWVGELAPDAQ 153


>gi|296121363|ref|YP_003629141.1| sun protein [Planctomyces limnophilus DSM 3776]
 gi|296013703|gb|ADG66942.1| sun protein [Planctomyces limnophilus DSM 3776]
          Length = 471

 Score = 62.0 bits (150), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 26/143 (18%), Positives = 50/143 (34%), Gaps = 15/143 (10%)

Query: 8   KDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLE 67
             ++L   R  AR  A   L           E+  +               +     D  
Sbjct: 10  PPMQLLAPRT-ARELAFNVLEAHHAGNKHIGEVFDQAVDR-----------TTLSPSDRR 57

Query: 68  WFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVII 127
               +I G++ R+  +  L+ S +  +     L+  L +I++ G+ ++  C  +P    +
Sbjct: 58  LAYELICGIVRRQSTLQALLMSLVHRQ--METLERPLQTIIKIGLYQIFLCQGIPQHAAV 115

Query: 128 SEYVCIAHDFFYGDEPKFINAVL 150
            E V +A          F+N VL
Sbjct: 116 HETVELAKR-ANLRWGGFVNGVL 137


>gi|166367976|ref|YP_001660249.1| rRNA SAM-dependent methyltransferase [Microcystis aeruginosa
           NIES-843]
 gi|166090349|dbj|BAG05057.1| rRNA SAM-dependent methyltransferase [Microcystis aeruginosa
           NIES-843]
          Length = 450

 Score = 62.0 bits (150), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 24/139 (17%), Positives = 50/139 (35%), Gaps = 13/139 (9%)

Query: 17  GIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGV 76
             AR  A+  L  ID         +  + +            S    +D      I++G+
Sbjct: 2   NNARQLALLILRDIDRSSAYPDRALDRHLS-----------ASSLNCLDTALTTEIVYGI 50

Query: 77  MDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHD 136
           + R++ +D L+     +  + ++    L  IL  G+ +L     +P    ++  V +   
Sbjct: 51  IRRQRTLDALLDRLGKK--TAAQQPPDLRRILHIGLYQLRYLSQIPPSAAVNTAVELTKI 108

Query: 137 FFYGDEPKFINAVLDKVSR 155
              G     +N +L +  R
Sbjct: 109 SHLGKLAAVVNGMLRQYLR 127


>gi|304389466|ref|ZP_07371429.1| ribosomal RNA small subunit methyltransferase B [Mobiluncus
           curtisii subsp. curtisii ATCC 35241]
 gi|304327276|gb|EFL94511.1| ribosomal RNA small subunit methyltransferase B [Mobiluncus
           curtisii subsp. curtisii ATCC 35241]
          Length = 523

 Score = 62.0 bits (150), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 31/139 (22%), Positives = 52/139 (37%), Gaps = 14/139 (10%)

Query: 15  RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74
           RR  AR  A QAL             + +   Y       L   +     D  +   +++
Sbjct: 42  RRDPARDVAFQAL-----------RRVDQDHAYANLVLPGLIERARLHRRDAAFATELVY 90

Query: 75  GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134
           G +  +   D +I   L      + LD  L ++LR G+ ++++   V     +   V +A
Sbjct: 91  GTLRLQGRYDAIIG--LLSDRDIAALDPELVTVLRMGIHQILQMR-VEDYAAVDTMVDLA 147

Query: 135 HDFFYGDEPKFINAVLDKV 153
            D         +NAVL KV
Sbjct: 148 RDRLSAGPAGMVNAVLRKV 166


>gi|324991975|gb|EGC23897.1| RNA methyltransferase Sun [Streptococcus sanguinis SK405]
          Length = 438

 Score = 61.7 bits (149), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 31/145 (21%), Positives = 58/145 (40%), Gaps = 15/145 (10%)

Query: 12  LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71
           +  ++  AR   ++ L           E+  E   Y   A      +S     D      
Sbjct: 1   MESKQKTARWQVLEIL----------EEVFEE-GAYSNIALNRALSQSPLSQADKGLVTE 49

Query: 72  IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
           +++G + RK  ++  +S  L E     +LD  +  +L   + +++    +P    + E V
Sbjct: 50  LVYGTVARKITLEWYLS-HLIEDR--DKLDNWIYILLMLSLYQMLYLDKIPQHATVHEAV 106

Query: 132 CIAHDFFYGDEPKFINAVLDKVSRK 156
            IA     G   KFINA+L ++ R+
Sbjct: 107 EIAKIRKRG-SEKFINALLRRIERE 130


>gi|323340708|ref|ZP_08080960.1| RNA methyltransferase Sun [Lactobacillus ruminis ATCC 25644]
 gi|323091831|gb|EFZ34451.1| RNA methyltransferase Sun [Lactobacillus ruminis ATCC 25644]
          Length = 447

 Score = 61.7 bits (149), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 26/147 (17%), Positives = 58/147 (39%), Gaps = 16/147 (10%)

Query: 10  LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF 69
           +K  +R    R  AV+ L           E I +  +Y   A  +   +S     D+   
Sbjct: 1   MKKLNR--NPRFLAVKLL-----------ERIEKNGSYSNLALNQTIKKSQLDERDVSLL 47

Query: 70  RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISE 129
             I++GV+ RK  ++  +   +  +         +  +L+  + + +    +P   + +E
Sbjct: 48  TNIVYGVIQRKLTLEFYLDGFIKNRRKVE---PWVYELLKTALYQQLYLDKIPKRAVFNE 104

Query: 130 YVCIAHDFFYGDEPKFINAVLDKVSRK 156
            + IA    +    +F+  +L ++ RK
Sbjct: 105 TIEIAKVNGHEGIRRFVTGILHEIERK 131


>gi|304313374|ref|YP_003812972.1| Ribosomal RNA small subunit methyltransferase B [gamma
           proteobacterium HdN1]
 gi|301799107|emb|CBL47350.1| Ribosomal RNA small subunit methyltransferase B [gamma
           proteobacterium HdN1]
          Length = 492

 Score = 61.7 bits (149), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 23/116 (19%), Positives = 44/116 (37%), Gaps = 3/116 (2%)

Query: 42  SEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLD 101
            + E+ R   D     +      + +  + I +GV      +D L++  L         D
Sbjct: 24  QQAESLRALNDLLPSAQERLPEAERKLAQEIAYGVCRWFTRLDKLLNPLLEH--PLKARD 81

Query: 102 MILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKE 157
             L ++L  G+ +L     +P    ISE V            + +N +L +V R++
Sbjct: 82  RDLHALLLVGLYQLYYTR-IPDHAAISETVEATRQLEKPWASRLVNGILRRVQREK 136


>gi|111224598|ref|YP_715392.1| hypothetical protein FRAAL5224 [Frankia alni ACN14a]
 gi|111152130|emb|CAJ63857.1| conserved hypothetical protein [Frankia alni ACN14a]
          Length = 497

 Score = 61.7 bits (149), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 23/119 (19%), Positives = 43/119 (36%), Gaps = 3/119 (2%)

Query: 36  STTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKW 95
                + E  +Y       L   S     D  +   + +G +  +  +D L+ +  +   
Sbjct: 27  EVLRAVDERGSYANLLLPSLLAGSGLPARDRGFVTELAYGALRAQGTLDGLLDTATSR-- 84

Query: 96  SFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVS 154
               +D  L   LR G  +L+    VP    ++  V +          +F NAVL +V+
Sbjct: 85  PVHDIDPPLRDALRLGAYQLL-RTRVPARAAVASTVDLVRATSGERPVRFANAVLRRVA 142


>gi|330466983|ref|YP_004404726.1| Fmu (Sun) domain-containing protein [Verrucosispora maris
           AB-18-032]
 gi|328809954|gb|AEB44126.1| Fmu (Sun) domain-containing protein [Verrucosispora maris
           AB-18-032]
          Length = 450

 Score = 61.7 bits (149), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 22/97 (22%), Positives = 38/97 (39%), Gaps = 4/97 (4%)

Query: 58  ESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIE 117
           E      D  +   + +G +     +D +++S         R+D  +   LR G  +L+ 
Sbjct: 32  EEGLFGRDAAFATELTYGTLRHSGTLDAILTSA--AGRDVQRIDPPVRDALRIGAYQLLH 89

Query: 118 CHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVS 154
              VP    +S  V +      G    F NAVL +V+
Sbjct: 90  TR-VPAHAAVSSTVDLVRMVGQG-ATGFANAVLREVA 124


>gi|319948960|ref|ZP_08023065.1| RNA binding Sun protein [Dietzia cinnamea P4]
 gi|319437398|gb|EFV92413.1| RNA binding Sun protein [Dietzia cinnamea P4]
          Length = 446

 Score = 61.7 bits (149), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 24/140 (17%), Positives = 48/140 (34%), Gaps = 8/140 (5%)

Query: 36  STTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKW 95
           +    + E   Y           +     D      + +G +  +  +D +I+  L    
Sbjct: 4   TVMAAVRERAAYANLTLPAELRRAKLDTRDAALATELTYGTLRAQGLLDRIIT--LASSR 61

Query: 96  SFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSR 155
               +D  +  ++R G  +L+    +     +   V  A     G    F+NAVL K+S 
Sbjct: 62  PVEEIDPPVLDLIRLGAYQLLFTR-IGAHAAVDTSVEAARTAGLGRAGAFVNAVLRKISA 120

Query: 156 KE-----EIKRSGCVSAITQ 170
           ++     E  R G    + +
Sbjct: 121 RDADAWVEALRDGVTDPVAR 140


>gi|315655374|ref|ZP_07908274.1| ribosomal RNA small subunit methyltransferase B [Mobiluncus
           curtisii ATCC 51333]
 gi|315490314|gb|EFU79939.1| ribosomal RNA small subunit methyltransferase B [Mobiluncus
           curtisii ATCC 51333]
          Length = 523

 Score = 61.7 bits (149), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 31/139 (22%), Positives = 52/139 (37%), Gaps = 14/139 (10%)

Query: 15  RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74
           RR  AR  A QAL             + +   Y       L   +     D  +   +++
Sbjct: 42  RRDPARDVAFQAL-----------RRVDQDHAYANLVLPGLIERARLHRRDAAFATELVY 90

Query: 75  GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134
           G +  +   D +I   L      + LD  L ++LR G+ ++++   V     +   V +A
Sbjct: 91  GTLRLQGRYDAIIG--LLSDRDIAALDPELVTVLRMGIHQILQMR-VEDYAAVDTMVDLA 147

Query: 135 HDFFYGDEPKFINAVLDKV 153
            D         +NAVL KV
Sbjct: 148 RDRLSAGPAGMVNAVLRKV 166


>gi|145594413|ref|YP_001158710.1| Fmu (Sun) domain-containing protein [Salinispora tropica CNB-440]
 gi|145303750|gb|ABP54332.1| Fmu (Sun) domain protein [Salinispora tropica CNB-440]
          Length = 509

 Score = 61.7 bits (149), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 27/138 (19%), Positives = 51/138 (36%), Gaps = 15/138 (10%)

Query: 20  RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79
           R AA QA     +      +  +         D      +  +  D  +   + +G + R
Sbjct: 64  RHAAYQA-----VAAVHRDDAYANLVLPAILRD------AGLVGRDAAFATELTYGTLRR 112

Query: 80  KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139
              +D +++         +R+D  +   LR G  +L+    VP    +S  V +      
Sbjct: 113 LGTLDAILTDA--AGRDVARIDPPVRDALRLGAYQLLHTR-VPAHAAVSATVDLVRSVGP 169

Query: 140 GDEPKFINAVLDKVSRKE 157
           G    F NAVL +V+ ++
Sbjct: 170 G-ATGFANAVLREVASRD 186


>gi|326329761|ref|ZP_08196082.1| ribosomal RNA small subunit methyltransferase B [Nocardioidaceae
           bacterium Broad-1]
 gi|325952526|gb|EGD44545.1| ribosomal RNA small subunit methyltransferase B [Nocardioidaceae
           bacterium Broad-1]
          Length = 489

 Score = 61.7 bits (149), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 29/137 (21%), Positives = 55/137 (40%), Gaps = 14/137 (10%)

Query: 19  ARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMD 78
           ARLAA + L           + +   E Y       +         D  +   +  G + 
Sbjct: 35  ARLAAFEVL-----------KAVRVDEAYANLVLPHVLGRLGLEGRDAAFATELASGTLR 83

Query: 79  RKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFF 138
           ++   D ++++C+      ++++  +  +LR G  +++    VP    IS  V +A    
Sbjct: 84  QQGTYDAVLAACIDR--PLAKVEAKVLDVLRLGAHQVLSMR-VPDHAAISTSVDLARSKV 140

Query: 139 YGDEPKFINAVLDKVSR 155
                 F+NAVL KV+R
Sbjct: 141 GQGPAGFVNAVLRKVTR 157


>gi|148906361|gb|ABR16335.1| unknown [Picea sitchensis]
          Length = 558

 Score = 61.7 bits (149), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 33/163 (20%), Positives = 67/163 (41%), Gaps = 11/163 (6%)

Query: 2   TIQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVE--- 58
            +  +K +  +S  R  +   AV+ L +I+  G     + ++Y       + +       
Sbjct: 77  PVDKSKINSNVSPHRAAS---AVRLL-RIEQGGAFADLLNADYRESAIDDEMDYIQRTLG 132

Query: 59  ---SVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLEL 115
              +     +      I+ GV+  K+++D LI S      +   ++ +L  ILR GV E+
Sbjct: 133 FRTNPLDARNTRLVTDIVAGVVRWKRYLDYLIFSLYDGAKNVKDMEPLLQQILRIGVYEI 192

Query: 116 IECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEE 158
           ++    P  V+ +E V +A           +N +L +V+   E
Sbjct: 193 VKLGMPPYAVV-NENVTLARAALRAGAGNMVNGILRRVASDRE 234


>gi|116788313|gb|ABK24833.1| unknown [Picea sitchensis]
          Length = 515

 Score = 61.3 bits (148), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 33/163 (20%), Positives = 67/163 (41%), Gaps = 11/163 (6%)

Query: 2   TIQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVE--- 58
            +  +K +  +S  R  +   AV+ L +I+  G     + ++Y       + +       
Sbjct: 77  PVDKSKINSNVSPHRAAS---AVRLL-RIEQGGAFADLLNADYRESAIDDEMDYIQRTLG 132

Query: 59  ---SVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLEL 115
              +     +      I+ GV+  K+++D LI S      +   ++ +L  ILR GV E+
Sbjct: 133 FRTNPLDARNTRLVTDIVAGVVRWKRYLDYLIFSLYDGAKNVKDMEPLLQQILRIGVYEI 192

Query: 116 IECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEE 158
           ++    P  V+ +E V +A           +N +L +V+   E
Sbjct: 193 VKLGMPPYAVV-NENVTLARAALRAGAGNMVNGILRRVASDRE 234


>gi|108760453|ref|YP_629658.1| ribosomal RNA small subunit methyltransferase B [Myxococcus xanthus
           DK 1622]
 gi|108464333|gb|ABF89518.1| ribosomal RNA small subunit methyltransferase B [Myxococcus xanthus
           DK 1622]
          Length = 438

 Score = 61.3 bits (148), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 27/134 (20%), Positives = 45/134 (33%), Gaps = 13/134 (9%)

Query: 19  ARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMD 78
           AR  A+Q L            + +         DT+L         D      + +G   
Sbjct: 3   ARALAIQVL----------ARVRATDAYLNVVLDTQLSESPPKDPRDAALVTELTYGATR 52

Query: 79  RKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFF 138
           R+  +D  I+     K     L+  + + LR G  ++     VP    ++E V    +  
Sbjct: 53  RQLALDYAITRFADRK--LDALEDKVLAALRIGAYQIFHTR-VPARAAVAETVQALKEVG 109

Query: 139 YGDEPKFINAVLDK 152
                 F NA+L K
Sbjct: 110 LTRAAGFTNAILRK 123


>gi|291003629|ref|ZP_06561602.1| ribosomal RNA small subunit methyltransferase [Saccharopolyspora
           erythraea NRRL 2338]
          Length = 473

 Score = 61.3 bits (148), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 29/142 (20%), Positives = 52/142 (36%), Gaps = 14/142 (9%)

Query: 19  ARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMD 78
           AR AA++ L             + + + Y   A   L  +      D      + +G   
Sbjct: 33  ARSAALETL-----------RAVRDRDAYANLALPALLKQRRISGRDAALATELTYGACR 81

Query: 79  RKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFF 138
            +  +D +I  C         +D  L   LR G  +L+    +P    ++  V I     
Sbjct: 82  AQGLLDAVIGECSAR--PLDGIDPELLDALRLGAYQLL-RTRIPAHAAVASTVDIVRAES 138

Query: 139 YGDEPKFINAVLDKVSRKEEIK 160
              +  F NAVL ++S ++E +
Sbjct: 139 GSRQAGFANAVLRRISERDEQE 160


>gi|330719303|ref|ZP_08313903.1| 16S rRNA methyltransferase B [Leuconostoc fallax KCTC 3537]
          Length = 411

 Score = 61.3 bits (148), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 16/96 (16%), Positives = 39/96 (40%), Gaps = 4/96 (4%)

Query: 61  YLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHS 120
               D      +++GV+  +  +   +   +  K    +LD  +  +L   + ++     
Sbjct: 1   MSDADRRLLTTLVYGVIQHRLTLAYWLEPFVANK----KLDDWVRELLYTALFQMQYLDK 56

Query: 121 VPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRK 156
           +P   + +E + +A    +    KF+  +L  +SRK
Sbjct: 57  IPQHAVFNESIEVAKILGHVGIRKFVTGILHDISRK 92


>gi|222151048|ref|YP_002560202.1| hypothetical protein MCCL_0799 [Macrococcus caseolyticus JCSC5402]
 gi|222120171|dbj|BAH17506.1| conserved hypothetical protein [Macrococcus caseolyticus JCSC5402]
          Length = 434

 Score = 61.3 bits (148), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 27/144 (18%), Positives = 49/144 (34%), Gaps = 22/144 (15%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           +   R  A++ L            +++E   Y      E   +     VD      +++G
Sbjct: 2   KHNVRSVALEIL----------DAVLTE-GAYSNLLINEAIKKGYVEPVDRALLTELVYG 50

Query: 76  VMDRKQHIDLLISSCLT---EKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVC 132
            + RK  ++   +  +    + W   RL      IL   + + +    VP   II+E V 
Sbjct: 51  TLQRKLTLEFYAAPYIKTNIKGW-MRRL------IL-MSIYQSVYLDKVPDHAIINEAVE 102

Query: 133 IAHDFFYGDEPKFINAVLDKVSRK 156
           I            +NA+L    R 
Sbjct: 103 ITKRRGSMGGANTVNAILRNFQRN 126


>gi|331701497|ref|YP_004398456.1| sun protein [Lactobacillus buchneri NRRL B-30929]
 gi|329128840|gb|AEB73393.1| sun protein [Lactobacillus buchneri NRRL B-30929]
          Length = 443

 Score = 61.3 bits (148), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 23/137 (16%), Positives = 49/137 (35%), Gaps = 15/137 (10%)

Query: 20  RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79
           R  AV  L            + +   +Y       +   +     D   F  I++GV+  
Sbjct: 9   RQLAVMTL------------VRTSNGSYSNLQINAVIQSTSMGPADKGLFTNIVYGVIQH 56

Query: 80  KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139
           +  ++  +   L E     + +  +  +L   + +L     VP   I  E + IA    +
Sbjct: 57  RLTLEYQLRPFLRE---PEKTEAWVKELLYTAMYQLEYLDRVPKRAIFDETIKIAKQMGH 113

Query: 140 GDEPKFINAVLDKVSRK 156
               +F+  +L ++ R+
Sbjct: 114 DGTRRFVTGILHQMDRQ 130


>gi|229025307|ref|ZP_04181726.1| Ribosomal RNA small subunit methyltransferase B [Bacillus cereus
           AH1272]
 gi|228735998|gb|EEL86574.1| Ribosomal RNA small subunit methyltransferase B [Bacillus cereus
           AH1272]
          Length = 387

 Score = 60.9 bits (147), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 13/52 (25%), Positives = 22/52 (42%)

Query: 105 CSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRK 156
             +LR  + +++    VP    I E V IA    +      +N VL  + R+
Sbjct: 18  RVLLRLSLYQMLYLDRVPERAAIHEAVEIAKRRGHKGISGMVNGVLRSIQRE 69


>gi|311029972|ref|ZP_07708062.1| sun protein [Bacillus sp. m3-13]
          Length = 126

 Score = 60.9 bits (147), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 20/117 (17%), Positives = 44/117 (37%), Gaps = 14/117 (11%)

Query: 20  RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79
           R  A++AL  ++     +  +++ Y                    D   F  I++G + R
Sbjct: 5   RELALEALLNVEKKQAYSNLLLNNYLD-----------SGKLSKKDAGLFTEIVYGTIQR 53

Query: 80  KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHD 136
              +D  ++S + ++        +   +L+  + +++    VP    I E V IA  
Sbjct: 54  TITLDYYLASYIEKQKKLQDWVKV---LLKMTLYQMLYLDKVPARAAIYEAVEIAKK 107


>gi|332653342|ref|ZP_08419087.1| ribosomal RNA small subunit methyltransferase B [Ruminococcaceae
           bacterium D16]
 gi|332518488|gb|EGJ48091.1| ribosomal RNA small subunit methyltransferase B [Ruminococcaceae
           bacterium D16]
          Length = 445

 Score = 60.9 bits (147), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 22/141 (15%), Positives = 44/141 (31%), Gaps = 14/141 (9%)

Query: 19  ARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMD 78
           AR AA+  L                   +   A  +          +      +  GV+ 
Sbjct: 3   AREAALLTL-----------NTCQRQGGWSDGALKKQLAAGGLEGREAALATQLCFGVVQ 51

Query: 79  RKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFF 138
            +  +D  IS          R++  +   LR G+ +++    +P    ++  V +     
Sbjct: 52  NEMLLDFYISKF--SNIPLRRMESKVVQALRLGLYQMLFLTKIPQSAAVNCSVELTRTHC 109

Query: 139 -YGDEPKFINAVLDKVSRKEE 158
                P  +NA+L  + R   
Sbjct: 110 KNPRAPGMVNAILRSLQRNLN 130


>gi|300858538|ref|YP_003783521.1| hypothetical protein cpfrc_01121 [Corynebacterium
           pseudotuberculosis FRC41]
 gi|300685992|gb|ADK28914.1| hypothetical protein cpfrc_01121 [Corynebacterium
           pseudotuberculosis FRC41]
 gi|302206250|gb|ADL10592.1| Ribosomal RNA small subunit methyltransferase B [Corynebacterium
           pseudotuberculosis C231]
 gi|302330808|gb|ADL21002.1| Ribosomal RNA small subunit methyltransferase B [Corynebacterium
           pseudotuberculosis 1002]
 gi|308276492|gb|ADO26391.1| Ribosomal RNA small subunit methyltransferase B [Corynebacterium
           pseudotuberculosis I19]
          Length = 504

 Score = 60.9 bits (147), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 31/185 (16%), Positives = 59/185 (31%), Gaps = 30/185 (16%)

Query: 2   TIQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDV---- 57
           +  +N+   ++S  RG           Q D    S  +I      +     +  D     
Sbjct: 38  SQVNNRPGGRVSENRGR----------QGDFRKLSGVDIARSLAFHVLHRVSSEDAFANL 87

Query: 58  -------ESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRA 110
                  ++     D  +   + +G +     +D L++ C +       +   L + LR 
Sbjct: 88  VLPKLLNKANVHGRDAAFATELTYGTLRTLGVLDTLLAECSSRG--LETIHPELLNALRL 145

Query: 111 GVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRK------EEIKRSGC 164
           G  +L+     P    +   V I     +     F N +L  +SR       E +   G 
Sbjct: 146 GAYQLMYMRVEPHA-AVDTTVRIVEALGHDKAKGFANGILRTISRSTPAEWMERLAPQGE 204

Query: 165 VSAIT 169
           V+ I 
Sbjct: 205 VANIA 209


>gi|257791459|ref|YP_003182065.1| NusB/RsmB/TIM44 [Eggerthella lenta DSM 2243]
 gi|257475356|gb|ACV55676.1| NusB/RsmB/TIM44 [Eggerthella lenta DSM 2243]
          Length = 473

 Score = 60.9 bits (147), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 26/150 (17%), Positives = 42/150 (28%), Gaps = 16/150 (10%)

Query: 5   DNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHV 64
                 K   +   ARLAA+                + E + +           S     
Sbjct: 16  PKNPPKKPRSKASPARLAAL-----------DVVRAVRERDAFAQDVIGTRIDRSDLSSE 64

Query: 65  DLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVE 124
           D  +   +  GV+     +D +I   L            +   LR    E+I     P  
Sbjct: 65  DRAFATKLALGVVSATGTLDEIIDRALNAPSDVK---PDVRDALRVSTYEIIFLGKTPHA 121

Query: 125 VIISEYVCIAHDFFYGDEPKFINAVLDKVS 154
             + + V +   F         NAVL K+ 
Sbjct: 122 -AVDQGVELVRSFAMSAS-GLANAVLRKIV 149


>gi|262068291|ref|ZP_06027903.1| ribosomal RNA small subunit methyltransferase B [Fusobacterium
           periodonticum ATCC 33693]
 gi|291378029|gb|EFE85547.1| ribosomal RNA small subunit methyltransferase B [Fusobacterium
           periodonticum ATCC 33693]
          Length = 434

 Score = 60.9 bits (147), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 22/111 (19%), Positives = 43/111 (38%), Gaps = 13/111 (11%)

Query: 53  TELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSC---LTEKWSFSRLDMILCSILR 109
            +   E  +   +  +   I +GV+  K  +D +I      + ++W        + ++LR
Sbjct: 25  NDAFREFHFTAKEKAFITEIFYGVLRNKNFLDYMIEKNTKVIKKEW--------IRNLLR 76

Query: 110 AGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIK 160
             + +L    S    V+  E   IA         KFIN  L    R ++++
Sbjct: 77  ISIYQLTFMSSDAKGVVW-EATEIAKKHGIAIS-KFINGTLRNYLRNKDLE 125


>gi|224543281|ref|ZP_03683820.1| hypothetical protein CATMIT_02481 [Catenibacterium mitsuokai DSM
           15897]
 gi|224523814|gb|EEF92919.1| hypothetical protein CATMIT_02481 [Catenibacterium mitsuokai DSM
           15897]
          Length = 51

 Score = 60.9 bits (147), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 16/51 (31%), Positives = 25/51 (49%), Gaps = 1/51 (1%)

Query: 103 ILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKV 153
           +  +IL     EL+E   +   ++I+E V  A  +   D  KFIN VL  +
Sbjct: 1   MEQAILLVATCELLES-ELDKSIVINEAVINAKQYCDEDSYKFINGVLTAI 50


>gi|210633282|ref|ZP_03297747.1| hypothetical protein COLSTE_01660 [Collinsella stercoris DSM 13279]
 gi|210159200|gb|EEA90171.1| hypothetical protein COLSTE_01660 [Collinsella stercoris DSM 13279]
          Length = 495

 Score = 60.9 bits (147), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 28/135 (20%), Positives = 46/135 (34%), Gaps = 16/135 (11%)

Query: 19  ARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMD 78
           AR A + AL Q    G    +I +             D        D  +   +  GV  
Sbjct: 29  ARRATLDALMQAQESGRYVRDIFA-----------HGDQLGRLSSRDAAFALRLALGVTA 77

Query: 79  RKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFF 138
            +  +D  ++S L +    S    +    LR    E +     P +V++S+ V +     
Sbjct: 78  TEGCLDDALNSHLAKPGKVS--ARV-RCCLRISAYEALY-LDTPADVVVSQGVELVRS-C 132

Query: 139 YGDEPKFINAVLDKV 153
                   NAVL +V
Sbjct: 133 AKSASGLANAVLRRV 147


>gi|51243976|ref|YP_063860.1| SUN protein (Fmu protein) [Desulfotalea psychrophila LSv54]
 gi|50875013|emb|CAG34853.1| related to SUN protein (FMU protein) [Desulfotalea psychrophila
           LSv54]
          Length = 454

 Score = 60.9 bits (147), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 22/92 (23%), Positives = 43/92 (46%), Gaps = 3/92 (3%)

Query: 73  IHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVC 132
           + GV+ ++Q++D+L+    T      +LD  +   L  G+ +L    S+P   I++E V 
Sbjct: 48  VFGVLRKRQYLDILLRKLSTV--RLKKLDPFVHQALTVGLYQLFFLDSIPESAIVNEAVN 105

Query: 133 IAHDFFYGDE-PKFINAVLDKVSRKEEIKRSG 163
                        F+N +L   +R++E   +G
Sbjct: 106 SCKTAKVHKRLHGFVNGILRNATRQKEALANG 137


>gi|238063929|ref|ZP_04608638.1| fmu domain-containing protein [Micromonospora sp. ATCC 39149]
 gi|237885740|gb|EEP74568.1| fmu domain-containing protein [Micromonospora sp. ATCC 39149]
          Length = 507

 Score = 60.9 bits (147), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 20/97 (20%), Positives = 38/97 (39%), Gaps = 4/97 (4%)

Query: 58  ESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIE 117
           +      D  +   + +G +     +D +++         +R+D  +   LR G  +L+ 
Sbjct: 89  QEGLTGRDAAFATELTYGTLRHLGTLDAILTDA--AGRDVARIDPPVRDALRLGAYQLLH 146

Query: 118 CHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVS 154
              VP    +S  V +      G    F NAVL +V+
Sbjct: 147 TR-VPAHAAVSSTVDLVRTVGIG-ATGFANAVLREVA 181


>gi|91204618|emb|CAJ70846.1| conserved hypothetical protein [Candidatus Kuenenia
           stuttgartiensis]
          Length = 462

 Score = 60.9 bits (147), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 22/130 (16%), Positives = 51/130 (39%), Gaps = 9/130 (6%)

Query: 32  IIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCL 91
           +      +++++      C  T +         D      +++G+   +  +D ++S   
Sbjct: 11  LRKVDEKDVLAQELVEERCQQTNV------SRRDKHLLLELVNGITRHRLSLDTILSFF- 63

Query: 92  TEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFF-YGDEPKFINAVL 150
             K    +++  L   LR G+ ++I    +P    ++  V +  +     D  +F NA+L
Sbjct: 64  -SKIPPQKIEPWLLYALRLGIYQMIFLDKIPHSAAVNTSVELVKNLIRRPDAARFANAIL 122

Query: 151 DKVSRKEEIK 160
             V R  + K
Sbjct: 123 RAVDRTIKNK 132


>gi|171912374|ref|ZP_02927844.1| RsmB [Verrucomicrobium spinosum DSM 4136]
          Length = 414

 Score = 60.5 bits (146), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 25/138 (18%), Positives = 53/138 (38%), Gaps = 21/138 (15%)

Query: 19  ARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMD 78
           +R  A+Q L + +       ++I +                   H D    + ++ G + 
Sbjct: 8   SRQLALQILVEWERSEIYAADLIEKAAATHRLD-----------HRDTALLQTLVMGTLR 56

Query: 79  RKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFF 138
               +D+ +      +     L+  +  +LR G+ +L+    +P   +++E V  A    
Sbjct: 57  NIDLLDIWLERVCDNQ----HLETSVHWLLRLGIAQLL-LLEMPAHAVVNETVNQA---- 107

Query: 139 YGDEPKFINAVLDKVSRK 156
            G     +NAVL +V R+
Sbjct: 108 -GKARGLVNAVLRRVDRE 124


>gi|119716670|ref|YP_923635.1| Fmu (Sun) domain-containing protein [Nocardioides sp. JS614]
 gi|119537331|gb|ABL81948.1| Fmu (Sun) domain protein [Nocardioides sp. JS614]
          Length = 472

 Score = 60.5 bits (146), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 32/156 (20%), Positives = 63/156 (40%), Gaps = 20/156 (12%)

Query: 2   TIQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVY 61
           + + N+  +        ARLAA+  +  + + G  T  ++                +   
Sbjct: 21  SQRGNRPRVDP------ARLAALDVMKAVRVDGAYTNLVLPSVLR-----------QHGL 63

Query: 62  LHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSV 121
              D  +   ++ G + R+   D ++++C+      S+++  +   LR G  +L+    V
Sbjct: 64  SGRDAAFVTELVSGTIRRRGTYDAILAACVDR--PLSKVEAKVLDALRLGTHQLLSMR-V 120

Query: 122 PVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKE 157
           PV   IS  V +           F NAVL +V+R+E
Sbjct: 121 PVHAAISTTVDLVRAKVSSGAGGFANAVLRQVARQE 156


>gi|227534879|ref|ZP_03964928.1| rRNA SAM-dependent methyltransferase RmsB [Lactobacillus paracasei
           subsp. paracasei ATCC 25302]
 gi|227187635|gb|EEI67702.1| rRNA SAM-dependent methyltransferase RmsB [Lactobacillus paracasei
           subsp. paracasei ATCC 25302]
          Length = 446

 Score = 60.5 bits (146), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 18/106 (16%), Positives = 41/106 (38%), Gaps = 5/106 (4%)

Query: 65  DLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVE 124
           D      I++GV+  +  +D  ++  +  +    +LD  +  +L   V +L     VP  
Sbjct: 41  DAGLLTNIVYGVIQHQLTLDFYLAPFIKGR----KLDNWIRCLLDTAVYQLQYLDKVPAR 96

Query: 125 VIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRSGCVSAITQ 170
            +  +   IA    +    KF+  VL   +++        ++   +
Sbjct: 97  AVFFDSTEIAKKLGHQGIAKFVTGVLRN-AQRTGFPDPAAIADPVK 141


>gi|239631985|ref|ZP_04675016.1| tRNA and rRNA cytosine-C5-methylase [Lactobacillus paracasei subsp.
           paracasei 8700:2]
 gi|301066670|ref|YP_003788693.1| tRNA and rRNA cytosine-C5-methylase [Lactobacillus casei str.
           Zhang]
 gi|239526450|gb|EEQ65451.1| tRNA and rRNA cytosine-C5-methylase [Lactobacillus paracasei subsp.
           paracasei 8700:2]
 gi|300439077|gb|ADK18843.1| tRNA and rRNA cytosine-C5-methylase [Lactobacillus casei str.
           Zhang]
          Length = 446

 Score = 60.5 bits (146), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 18/106 (16%), Positives = 41/106 (38%), Gaps = 5/106 (4%)

Query: 65  DLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVE 124
           D      I++GV+  +  +D  ++  +  +    +LD  +  +L   V +L     VP  
Sbjct: 41  DAGLLTNIVYGVIQHQLTLDFYLAPFIKGR----KLDNWIRCLLDTAVYQLQYLDKVPAR 96

Query: 125 VIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRSGCVSAITQ 170
            +  +   IA    +    KF+  VL   +++        ++   +
Sbjct: 97  AVFFDSTEIAKKLGHQGIAKFVTGVLRN-AQRTGFPDPAAIADPVK 141


>gi|258404156|ref|YP_003196898.1| NusB/RsmB/TIM44 [Desulfohalobium retbaense DSM 5692]
 gi|257796383|gb|ACV67320.1| NusB/RsmB/TIM44 [Desulfohalobium retbaense DSM 5692]
          Length = 429

 Score = 60.5 bits (146), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 29/152 (19%), Positives = 56/152 (36%), Gaps = 16/152 (10%)

Query: 19  ARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMD 78
           AR AA+  L            ++   +  +   D  LD  S+    D      +++GV  
Sbjct: 10  ARQAALSCL----------EGVLLRDQELQASLDGVLDSASLEPR-DRALATELVYGVCR 58

Query: 79  RKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFF 138
            K H++  I+  +  K   +RL   L  IL     E++    +P    +   V       
Sbjct: 59  HKTHLETAITRFVHPK---TRLKPRLRLILSVAAYEMLYLDRIPAYASVDWAVNAVKKRV 115

Query: 139 YGDEPKFINAVLDKVSRKEEIKRSGCVSAITQ 170
                   NAVL +++  +++   G  + + +
Sbjct: 116 AVQRAGVANAVLRRLA--DDLHNRGRPAVVHE 145


>gi|117928484|ref|YP_873035.1| Fmu (Sun) domain-containing protein [Acidothermus cellulolyticus
           11B]
 gi|117648947|gb|ABK53049.1| Fmu (Sun) domain protein [Acidothermus cellulolyticus 11B]
          Length = 440

 Score = 60.5 bits (146), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 20/90 (22%), Positives = 37/90 (41%), Gaps = 4/90 (4%)

Query: 65  DLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVE 124
           D      +++G +      D ++  CL       RL   +  +LR GV +L+    V   
Sbjct: 42  DAALATELVYGTLRLLGTYDAVLDRCLPR---PDRLHPRVRDVLRLGVHQLLGMR-VDPH 97

Query: 125 VIISEYVCIAHDFFYGDEPKFINAVLDKVS 154
             + E V +A         + +NAVL +++
Sbjct: 98  AAVYESVELARRTGGAVAARLVNAVLRRIA 127


>gi|220906120|ref|YP_002481431.1| sun protein [Cyanothece sp. PCC 7425]
 gi|219862731|gb|ACL43070.1| sun protein [Cyanothece sp. PCC 7425]
          Length = 443

 Score = 60.5 bits (146), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 23/139 (16%), Positives = 48/139 (34%), Gaps = 15/139 (10%)

Query: 19  ARLAAVQALYQIDIIGCSTT-EIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVM 77
           AR  A   L Q    G      +      +    + E                 +++G +
Sbjct: 3   ARQLAFITL-QAVHRGAYADVAVERSLRQHPLTEERE-----------RRLATELVYGCV 50

Query: 78  DRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDF 137
            R++ +D L+   L +K    +    L ++L  G+ +L   + +P    +   V +    
Sbjct: 51  RRQRTLDALVDQ-LAKK-PARQQPPDLRTLLHLGLYQLRYLNHIPANAAVHTTVELVKHR 108

Query: 138 FYGDEPKFINAVLDKVSRK 156
                  F+N +L +  R+
Sbjct: 109 GLAGLAGFVNGLLRQYIRQ 127


>gi|227544379|ref|ZP_03974428.1| rRNA SAM-dependent methyltransferase RmsB [Lactobacillus reuteri
           CF48-3A]
 gi|300909760|ref|ZP_07127221.1| ribosomal RNA small subunit methyltransferase B [Lactobacillus
           reuteri SD2112]
 gi|227185642|gb|EEI65713.1| rRNA SAM-dependent methyltransferase RmsB [Lactobacillus reuteri
           CF48-3A]
 gi|300893625|gb|EFK86984.1| ribosomal RNA small subunit methyltransferase B [Lactobacillus
           reuteri SD2112]
          Length = 449

 Score = 60.5 bits (146), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 31/147 (21%), Positives = 54/147 (36%), Gaps = 15/147 (10%)

Query: 10  LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF 69
           +K   +   AR  A+ AL           + + E   Y      +L         D    
Sbjct: 1   MKTKFQPQNARELALVAL-----------KGVVENGAYSNLQVDQLLKRYPLADKDRRLA 49

Query: 70  RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISE 129
             II+GV+  K  ++  ++  +  K    RLD  + ++L + + +      VP   +  E
Sbjct: 50  TNIIYGVLQHKLTLEYWLNGFVQGK----RLDPWVKTLLLSALYQYHYLERVPDWAVTDE 105

Query: 130 YVCIAHDFFYGDEPKFINAVLDKVSRK 156
            + IA         KF+  VL  + RK
Sbjct: 106 SIEIAKRRGNPGIRKFVTGVLHAILRK 132


>gi|257466839|ref|ZP_05631150.1| 16S rRNA m(5)C 967 methyltransferase [Fusobacterium gonidiaformans
           ATCC 25563]
 gi|315917987|ref|ZP_07914227.1| 16S rRNA m(5)C 967 methyltransferase [Fusobacterium gonidiaformans
           ATCC 25563]
 gi|313691862|gb|EFS28697.1| 16S rRNA m(5)C 967 methyltransferase [Fusobacterium gonidiaformans
           ATCC 25563]
          Length = 440

 Score = 60.5 bits (146), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 29/126 (23%), Positives = 50/126 (39%), Gaps = 17/126 (13%)

Query: 47  YRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTE---KWSFSRLDMI 103
           Y   A  EL    V+   +  +   + +GV+  K ++D +IS  + E    W        
Sbjct: 19  YSNIALNELFHRKVFKKGEKNFITEVFYGVIRNKIYLDYMISQKVKEVKKDW-------- 70

Query: 104 LCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSR-----KEE 158
           L  + R    ++    S   + +I E V +A   +     +F+N VL    R     +E 
Sbjct: 71  LQQLFRLSFYQIRFMKS-DDKGVIWEGVELAKKKYGVSVSRFVNGVLRNFQRSFIEEEEN 129

Query: 159 IKRSGC 164
           +KR G 
Sbjct: 130 LKREGR 135


>gi|319947546|ref|ZP_08021776.1| RNA methyltransferase Sun [Streptococcus australis ATCC 700641]
 gi|319746234|gb|EFV98497.1| RNA methyltransferase Sun [Streptococcus australis ATCC 700641]
          Length = 440

 Score = 60.5 bits (146), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 27/144 (18%), Positives = 62/144 (43%), Gaps = 15/144 (10%)

Query: 14  HRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVII 73
           ++   AR  A+  L           EI  +   +   +  +   ++    VD      I+
Sbjct: 6   NKMQTAREVALSTL----------GEIFQD-GAFSNISLKKSLGKATLSDVDKSLVTEIV 54

Query: 74  HGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCI 133
           +G + RK  ++  +S  + ++    ++D  +  +L   + + +    +P+  ++ E V +
Sbjct: 55  YGTVSRKLTLEWYLSHFVADR---DQVDPWIYHLLLMSLYQFVYLEKIPLHAVVHEAVEL 111

Query: 134 AHDFFYGDEPKFINAVLDKVSRKE 157
           A     G   K++NA+L K+ R+E
Sbjct: 112 AKQRKKG-SEKYVNALLRKMLREE 134


>gi|257452795|ref|ZP_05618094.1| 16S rRNA m(5)C 967 methyltransferase [Fusobacterium sp. 3_1_5R]
 gi|317059336|ref|ZP_07923821.1| 16S rRNA m(5)C 967 methyltransferase [Fusobacterium sp. 3_1_5R]
 gi|313685012|gb|EFS21847.1| 16S rRNA m(5)C 967 methyltransferase [Fusobacterium sp. 3_1_5R]
          Length = 440

 Score = 60.5 bits (146), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 29/126 (23%), Positives = 50/126 (39%), Gaps = 17/126 (13%)

Query: 47  YRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTE---KWSFSRLDMI 103
           Y   A  EL    V+   +  +   + +GV+  K ++D +IS  + E    W        
Sbjct: 19  YSNIALNELFHRKVFKKGEKNFITEVFYGVIRNKIYLDYMISQKVKEVKKDW-------- 70

Query: 104 LCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSR-----KEE 158
           L  + R    ++    S   + +I E V +A   +     +F+N VL    R     +E 
Sbjct: 71  LQQLFRLSFYQIRFMKS-DDKGVIWEGVELAKKKYGVSVSRFVNGVLRNFQRSFIEEEEN 129

Query: 159 IKRSGC 164
           +KR G 
Sbjct: 130 LKREGR 135


>gi|18416739|ref|NP_567745.1| antitermination NusB domain-containing protein [Arabidopsis
           thaliana]
 gi|15450968|gb|AAK96755.1| putative protein [Arabidopsis thaliana]
 gi|30984514|gb|AAP42720.1| At4g26370 [Arabidopsis thaliana]
 gi|332659789|gb|AEE85189.1| antitermination NusB domain-containing protein [Arabidopsis
           thaliana]
          Length = 301

 Score = 60.5 bits (146), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 31/189 (16%), Positives = 55/189 (29%), Gaps = 52/189 (27%)

Query: 17  GIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELD-------------------- 56
             AR  A+  LY   + G     +  +    R     E D                    
Sbjct: 98  RAARELALVILYAACLEGSDPIRLFEKRINARREPGYEFDKSSLLEYNHMSFGGPPVKTE 157

Query: 57  --------------------------VESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSC 90
                                      + VY  + L + + ++  V+D+     ++I   
Sbjct: 158 TKEEEDELVRHDEKESKIEAEVLSAPPKLVYSKLVLRFAKKLLAAVVDKWDSHVVIIEKI 217

Query: 91  LTEKW---SFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFIN 147
               W      R+  +  SIL   + E +        ++I+E V +A  F  G  P+ IN
Sbjct: 218 SPPDWKSAPAGRI--LEFSILHLAMSE-VAVLETRHPIVINEAVDLAKRFCDGSAPRIIN 274

Query: 148 AVLDKVSRK 156
             L    + 
Sbjct: 275 GCLRTFVKD 283


>gi|320450772|ref|YP_004202868.1| 16S rRNA M [Thermus scotoductus SA-01]
 gi|320150941|gb|ADW22319.1| 16S rRNA M [Thermus scotoductus SA-01]
          Length = 399

 Score = 60.5 bits (146), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 24/97 (24%), Positives = 43/97 (44%), Gaps = 6/97 (6%)

Query: 61  YLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHS 120
           +   D  +   +++GV+ R +++D L+   L +     RL   +  ILR G  E +   +
Sbjct: 36  WPERDRAYATHLVYGVLRRLRYLDFLLEPHLRK---PERLPPQVRWILRLGAWEWLAGKA 92

Query: 121 VPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKE 157
               V  S +V  A           +NAVL ++S +E
Sbjct: 93  DHARV--SPWVEEAKRVS-PRLAGLVNAVLRRLSLRE 126


>gi|307102870|gb|EFN51136.1| hypothetical protein CHLNCDRAFT_8770 [Chlorella variabilis]
          Length = 425

 Score = 60.5 bits (146), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 23/100 (23%), Positives = 40/100 (40%), Gaps = 2/100 (2%)

Query: 71  VIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEY 130
            ++ GV   ++ +D  ++  L      ++LD  + + LR G+ EL E  +    V I+ Y
Sbjct: 11  ELVSGVTRWRRRLDFSLTQLL-RGRDVAQLDAPVRNALRLGLYELAELKNATHGV-INSY 68

Query: 131 VCIAHDFFYGDEPKFINAVLDKVSRKEEIKRSGCVSAITQ 170
           V +     +       N VL  V+R  E           Q
Sbjct: 69  VDLVKSVQHQGAANATNGVLRNVARGLEAGTLPQPPRPAQ 108


>gi|317490607|ref|ZP_07949080.1| NusB family protein [Eggerthella sp. 1_3_56FAA]
 gi|325831536|ref|ZP_08164790.1| putative ribosomal RNA small subunit methyltransferase B
           [Eggerthella sp. HGA1]
 gi|316910309|gb|EFV31945.1| NusB family protein [Eggerthella sp. 1_3_56FAA]
 gi|325486790|gb|EGC89238.1| putative ribosomal RNA small subunit methyltransferase B
           [Eggerthella sp. HGA1]
          Length = 473

 Score = 60.5 bits (146), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 25/150 (16%), Positives = 42/150 (28%), Gaps = 16/150 (10%)

Query: 5   DNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHV 64
                 K   +   ARLAA+                + E + +           S     
Sbjct: 16  PKNPQKKPRSKASPARLAAL-----------DVVRAVRERDAFAQDVIGTRIDRSDLSSE 64

Query: 65  DLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVE 124
           D  +   +  GV+     +D +I   L            +   LR    E++     P  
Sbjct: 65  DRAFATKLALGVVSSTGTLDEIIDRALNAPSDVK---PDVRDALRVSAYEIVFLGKTPHA 121

Query: 125 VIISEYVCIAHDFFYGDEPKFINAVLDKVS 154
             + + V +   F         NAVL K+ 
Sbjct: 122 -AVDQGVELVRSFAMSAS-GLANAVLRKIV 149


>gi|288918235|ref|ZP_06412590.1| Fmu (Sun) domain protein [Frankia sp. EUN1f]
 gi|288350405|gb|EFC84627.1| Fmu (Sun) domain protein [Frankia sp. EUN1f]
          Length = 501

 Score = 60.5 bits (146), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 29/162 (17%), Positives = 57/162 (35%), Gaps = 20/162 (12%)

Query: 10  LKLSHRRG-----IARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHV 64
           +  S  R       ARL A       ++        + E   Y       L         
Sbjct: 1   MNTSAPRRGGAADPARLLA------WEV-----LRAVDERGAYANLMLPALLNRRRLSPR 49

Query: 65  DLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVE 124
           D  +   + +G +  +  +D ++ +  +       +D  +   LR G  +L+    VP  
Sbjct: 50  DRGFATELTYGSLRAQGTLDGVLGTVTSR--PVDTVDPPVRDALRLGTYQLLSTR-VPAR 106

Query: 125 VIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRSGCVS 166
             ++  V +          +F NAVL +V+ + E + +G V+
Sbjct: 107 AAVASTVELVRATCGERPVRFANAVLRRVAARVE-ETAGDVA 147


>gi|148377730|ref|YP_001256606.1| transcription termination factor (NusB) [Mycoplasma agalactiae PG2]
 gi|291320415|ref|YP_003515678.1| transcription termination factor NusB [Mycoplasma agalactiae]
 gi|148291776|emb|CAL59165.1| Transcription termination factor (NusB) [Mycoplasma agalactiae PG2]
 gi|290752749|emb|CBH40724.1| Transcription termination factor (NusB) [Mycoplasma agalactiae]
          Length = 139

 Score = 60.5 bits (146), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 21/99 (21%), Positives = 46/99 (46%), Gaps = 6/99 (6%)

Query: 59  SVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIEC 118
           S    +D E F+ +   +     +    I   L +  ++++L  ++ +IL     EL+  
Sbjct: 32  SDESDIDNEQFKQL-ELISLNYDYYQKTILKFLNQNTAWTKLPALIRAILLNATHELL-- 88

Query: 119 HSVPVEVIISEYVCIAHDFFYGDE--PKFINAVLDKVSR 155
            S+  +++I+E V I   F+  +    K +NA+L  + +
Sbjct: 89  -SISPKIVINEAVEITKSFYEQEANFYKLVNALLQNIYK 126


>gi|226366354|ref|YP_002784137.1| rRNA methyltransferase [Rhodococcus opacus B4]
 gi|226244844|dbj|BAH55192.1| putative rRNA methyltransferase [Rhodococcus opacus B4]
          Length = 475

 Score = 60.5 bits (146), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 30/149 (20%), Positives = 53/149 (35%), Gaps = 4/149 (2%)

Query: 13  SHRRGIARLAAVQ-ALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71
           +  R   R  A Q  L Q  +        + E + Y       L  E      D      
Sbjct: 20  NRPRQARRPDASQSGLDQPRLAARDVLRAVRERDAYANLVLPGLLRERRLDGRDAALATE 79

Query: 72  IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
           + +G    +  +D +I+ C         +D  L  +L+ G  +L+     P   + +  V
Sbjct: 80  LAYGAARARGLLDAVIADC--AGRPIDEIDGPLLDVLQLGAYQLLRTRVAPHAAVAT-SV 136

Query: 132 CIAHDFFYGDEPKFINAVLDKVSRKEEIK 160
            +        +  F+NAVL +VS + E +
Sbjct: 137 DLVRAEAGPGKAGFVNAVLRRVSERSEAE 165


>gi|116333602|ref|YP_795129.1| tRNA and rRNA cytosine-C5-methylase [Lactobacillus brevis ATCC 367]
 gi|116098949|gb|ABJ64098.1| tRNA and rRNA cytosine-C5-methylase [Lactobacillus brevis ATCC 367]
          Length = 447

 Score = 60.5 bits (146), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 23/137 (16%), Positives = 56/137 (40%), Gaps = 15/137 (10%)

Query: 20  RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79
           R  AV+AL ++     S  ++    E++R               VD  +   +++G +  
Sbjct: 8   RALAVEALTRVAGGAYSNLQLEQTLESHRL------------SDVDRRFVTNLVYGTIQH 55

Query: 80  KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139
           +  ++  +S  +  +     L  +  +++   + + +    VP   I +E + +A D  +
Sbjct: 56  QLTLEYYLSKFIKPQQKV--LPWVKMTLM-VALYQELYLDRVPKRAIFNEAIQLAKDRGH 112

Query: 140 GDEPKFINAVLDKVSRK 156
               +F+  VL  + R+
Sbjct: 113 EGIRRFVTGVLHAIDRQ 129


>gi|184155726|ref|YP_001844066.1| rRNA methylase [Lactobacillus fermentum IFO 3956]
 gi|183227070|dbj|BAG27586.1| rRNA methylase [Lactobacillus fermentum IFO 3956]
          Length = 448

 Score = 60.5 bits (146), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 19/133 (14%), Positives = 44/133 (33%), Gaps = 9/133 (6%)

Query: 29  QIDIIGC-----STTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHI 83
           Q  + G      +T + +     Y      +          D      +++G +  ++ +
Sbjct: 5   QAQLTGARAIALATLDKVRTSGAYSNLQLNQALESGQLSGADRRLVTALVYGTLQHQRTL 64

Query: 84  DLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEP 143
           D  +S  +  K    ++   + ++L   + +      VP      E + IA         
Sbjct: 65  DYWLSPFIAGK----KVRPWVKTLLLMALFQYQYLDRVPNFAATDEAIEIAKRRGNPGVR 120

Query: 144 KFINAVLDKVSRK 156
           +F+  VL  + R 
Sbjct: 121 RFVTGVLHAILRN 133


>gi|237740345|ref|ZP_04570826.1| 16S rRNA m(5)C 967 methyltransferase [Fusobacterium sp. 2_1_31]
 gi|229422362|gb|EEO37409.1| 16S rRNA m(5)C 967 methyltransferase [Fusobacterium sp. 2_1_31]
          Length = 434

 Score = 60.1 bits (145), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 22/111 (19%), Positives = 42/111 (37%), Gaps = 13/111 (11%)

Query: 53  TELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSC---LTEKWSFSRLDMILCSILR 109
            +   E      +  +   I +GV+  K  +D +I      + ++W        + ++LR
Sbjct: 25  NDAFKEFYLTAKEKAFITEIFYGVLRNKNFLDYMIEKNTKVIKKEW--------IRNLLR 76

Query: 110 AGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIK 160
             + +L    S    V+  E   IA         KFIN  L    R ++++
Sbjct: 77  ISIYQLTFMSSDAKGVVW-EATEIAKKHGIAIS-KFINGTLRNYLRNKDLE 125


>gi|294782560|ref|ZP_06747886.1| ribosomal RNA small subunit methyltransferase B [Fusobacterium sp.
           1_1_41FAA]
 gi|294481201|gb|EFG28976.1| ribosomal RNA small subunit methyltransferase B [Fusobacterium sp.
           1_1_41FAA]
          Length = 434

 Score = 60.1 bits (145), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 22/111 (19%), Positives = 42/111 (37%), Gaps = 13/111 (11%)

Query: 53  TELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSC---LTEKWSFSRLDMILCSILR 109
            +   E      +  +   I +GV+  K  +D +I      + ++W        + ++LR
Sbjct: 25  NDAFKEFYLTAKEKAFITEIFYGVLRNKNFLDYMIEKNTKVIKKEW--------IRNLLR 76

Query: 110 AGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIK 160
             + +L    S    V+  E   IA         KFIN  L    R ++++
Sbjct: 77  ISIYQLTFMSSDAKGVVW-EATEIAKKHGIAIS-KFINGTLRNYLRNKDLE 125


>gi|225435806|ref|XP_002285757.1| PREDICTED: hypothetical protein [Vitis vinifera]
          Length = 288

 Score = 60.1 bits (145), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 30/142 (21%), Positives = 54/142 (38%), Gaps = 16/142 (11%)

Query: 30  IDIIGCSTT-EIISEYETYRFCADTELDVES---------VYLHVDLEWFRVIIHGVMDR 79
           +   G   T E + E +      + E  +E+         VY  + L + R ++  V+D+
Sbjct: 134 MSFGGPPVTTETVEEADELLRNNEKESAIEAEVLSAPPKLVYGKLILRFTRKLLVAVVDK 193

Query: 80  KQHIDLLISSCLTEKWSFS---RLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHD 136
                L+I       W      R+  +   IL   + E+        +++I+E V +A  
Sbjct: 194 WNSHVLVIDKVAPPNWKNEPAGRI--LELCILHLAMSEI-AVLGTRHQIVINEAVDLAKR 250

Query: 137 FFYGDEPKFINAVLDKVSRKEE 158
           F  G  P+ IN  L    +  E
Sbjct: 251 FCDGAAPRIINGCLRTFVKDLE 272


>gi|320352726|ref|YP_004194065.1| sun protein [Desulfobulbus propionicus DSM 2032]
 gi|320121228|gb|ADW16774.1| sun protein [Desulfobulbus propionicus DSM 2032]
          Length = 450

 Score = 60.1 bits (145), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 18/99 (18%), Positives = 41/99 (41%), Gaps = 3/99 (3%)

Query: 59  SVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIEC 118
                +D    + +I+GV+ +K+++D ++ +         ++       LR GV +L+  
Sbjct: 35  EQLPDIDRGLVKTLIYGVLRQKEYLDHILRTFAKH--PLRKMKPRTLMTLRIGVYQLLFL 92

Query: 119 HSVPVEVIISEYVCIAHDFFYGD-EPKFINAVLDKVSRK 156
             +P    ++  V              F+N +L  V+R+
Sbjct: 93  SRIPESAAVNATVNTLKAASQPAWLIGFVNGILRAVARQ 131


>gi|148272956|ref|YP_001222517.1| putative rRNA cytosine-C5-methylases [Clavibacter michiganensis
           subsp. michiganensis NCPPB 382]
 gi|147830886|emb|CAN01830.1| putative rRNA cytosine-C5-methylases [Clavibacter michiganensis
           subsp. michiganensis NCPPB 382]
          Length = 499

 Score = 60.1 bits (145), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 22/125 (17%), Positives = 43/125 (34%), Gaps = 3/125 (2%)

Query: 36  STTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKW 95
                + E + Y           +     D      + +G +    + D +I   L    
Sbjct: 52  EVVSAVRESDAYANLLLPVRIRRAALSAQDAALATELAYGTLRMSGYYDRVIE--LAAGR 109

Query: 96  SFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSR 155
             + +D  +  +LR  V +L+    V     ++E V +A          F+N VL  ++R
Sbjct: 110 PVTAIDAPILDVLRLSVHQLLSMR-VATHAAVNEGVDMARAVGSRSATGFVNGVLRTITR 168

Query: 156 KEEIK 160
            E  +
Sbjct: 169 SEPAE 173


>gi|240172782|ref|ZP_04751441.1| fmu protein (sun protein) [Mycobacterium kansasii ATCC 12478]
          Length = 464

 Score = 60.1 bits (145), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 30/140 (21%), Positives = 52/140 (37%), Gaps = 14/140 (10%)

Query: 19  ARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMD 78
           AR AA  AL             ++  + Y   A   L  E      D  +   + +G   
Sbjct: 23  ARAAAFDAL-----------CAVTSRDAYANLALPALLRERGITGRDAAFATELTYGTCR 71

Query: 79  RKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFF 138
            +  +D +I +      +   +D +L  +LR G  +L+    V     +S  V  A   F
Sbjct: 72  TRGLLDAVIGAA--AGRAPEAIDPVLLDLLRLGTYQLL-RTRVGSHAAVSTTVDQAGIEF 128

Query: 139 YGDEPKFINAVLDKVSRKEE 158
                 F+N VL  ++ ++E
Sbjct: 129 DSARAGFVNGVLRTIAGRDE 148


>gi|118617418|ref|YP_905750.1| Fmu protein [Mycobacterium ulcerans Agy99]
 gi|118569528|gb|ABL04279.1| Fmu protein [Mycobacterium ulcerans Agy99]
          Length = 457

 Score = 60.1 bits (145), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 35/154 (22%), Positives = 54/154 (35%), Gaps = 17/154 (11%)

Query: 8   KDLKLSHRRGI---ARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHV 64
            + +   RR     AR AA  AL             +SE   Y       L  E      
Sbjct: 2   PNQRRGPRRRPLDPARGAAFNAL-----------RAVSERNAYANLVLPALLRERGITGR 50

Query: 65  DLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVE 124
           D      + +G    +  +D +I +      S   +D  L  +LR G  +L+    V   
Sbjct: 51  DAALATELTYGACRARGLLDAIIGAA--AGRSPEAIDPFLLDLLRLGAYQLL-RTRVDAH 107

Query: 125 VIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEE 158
             +S  V  A   F      F+NAVL  ++ ++E
Sbjct: 108 AAVSTTVEQAGIEFDSARAGFVNAVLRTIADRDE 141


>gi|319790535|ref|YP_004152168.1| sun protein [Thermovibrio ammonificans HB-1]
 gi|317115037|gb|ADU97527.1| sun protein [Thermovibrio ammonificans HB-1]
          Length = 445

 Score = 60.1 bits (145), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 21/133 (15%), Positives = 44/133 (33%), Gaps = 23/133 (17%)

Query: 20  RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79
           R  AV+ L              + +E  +   +    + +     +  + R +++G +  
Sbjct: 8   REIAVKVL--------------NAFERDKKLREHLEALTAALTPQERAFLRELVNGTVRF 53

Query: 80  KQHIDLLISSCLTEKWSFSRLD---MILCSILRAGVLELIECHSVPVEVIISEYVCIAHD 136
            + +D  +           RL      + + LR    +L     VP    ++E V +   
Sbjct: 54  LRLLDFSVERASGR-----RLASQKPTVRNALRLLAYQL-FFTGVPPYAALNETVEVVKQ 107

Query: 137 FFYGDEPKFINAV 149
                   F+NAV
Sbjct: 108 RLGKGAAGFVNAV 120


>gi|217967819|ref|YP_002353325.1| sun protein [Dictyoglomus turgidum DSM 6724]
 gi|217336918|gb|ACK42711.1| sun protein [Dictyoglomus turgidum DSM 6724]
          Length = 430

 Score = 59.7 bits (144), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 27/139 (19%), Positives = 50/139 (35%), Gaps = 16/139 (11%)

Query: 20  RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79
           RL A + LY ++        ++     +   +  E             +   +++GV   
Sbjct: 4   RLRAAEILYDLERREAYLNILLRNRLPFYDLSLKE-----------KHFITELVYGVTRW 52

Query: 80  KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139
           K  +D + S  +        L +    +LR  V  +       + V ++E V IA     
Sbjct: 53  KITLDYIWSRFVRR----DNLSLFSKVLLRLVVYHVYFLKDTILPVAVNEIVEIAKK-KV 107

Query: 140 GDEPKFINAVLDKVSRKEE 158
             E K INAV   + R++ 
Sbjct: 108 PKEAKLINAVSRNIIREKN 126


>gi|215430293|ref|ZP_03428212.1| fmu protein (sun protein) [Mycobacterium tuberculosis EAS054]
 gi|289753488|ref|ZP_06512866.1| fmu protein (sun protein) [Mycobacterium tuberculosis EAS054]
 gi|289694075|gb|EFD61504.1| fmu protein (sun protein) [Mycobacterium tuberculosis EAS054]
          Length = 254

 Score = 59.7 bits (144), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 31/152 (20%), Positives = 55/152 (36%), Gaps = 14/152 (9%)

Query: 19  ARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMD 78
           AR AA + L             +S  + Y       L  +      D  +   + +G   
Sbjct: 16  ARRAAFETL-----------RAVSARDAYANLVLPALLAQRGIGGRDAAFATELTYGTCR 64

Query: 79  RKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFF 138
            +  +D +I +      S   +D +L  +LR G  +L+    V     +S  V  A   F
Sbjct: 65  ARGLLDAVIGAAAER--SPQAIDPVLLDLLRLGTYQLL-RTRVDAHAAVSTTVEQAGIEF 121

Query: 139 YGDEPKFINAVLDKVSRKEEIKRSGCVSAITQ 170
                 F+N VL  ++ ++E    G ++   Q
Sbjct: 122 DSARAGFVNGVLRTIAGRDERSWVGELAPDAQ 153


>gi|223940862|ref|ZP_03632690.1| sun protein [bacterium Ellin514]
 gi|223890472|gb|EEF57005.1| sun protein [bacterium Ellin514]
          Length = 444

 Score = 59.7 bits (144), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 29/137 (21%), Positives = 57/137 (41%), Gaps = 15/137 (10%)

Query: 20  RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79
           R  AV+ L          TE +S+ E      + EL   +     D    + +++G++  
Sbjct: 16  RQIAVRVL----------TERLSQEEYTENLLEIELSR-ARLSAPDRGLCQELVYGIVRW 64

Query: 80  KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139
           ++ ++ LI      K    R    +  +L+ G+ ++     +P    + E V IA +  +
Sbjct: 65  QETLNWLI----DRKTEGRRQKPEMQVLLQLGLYQMFWLDRIPNHAAVHETVEIAKELGF 120

Query: 140 GDEPKFINAVLDKVSRK 156
             +  F+NAVL    R+
Sbjct: 121 VAQSGFVNAVLRGYLRE 137


>gi|94990962|ref|YP_599062.1| 16S rRNA m(5)C 967 methyltransferase [Streptococcus pyogenes
           MGAS10270]
 gi|94544470|gb|ABF34518.1| 16S rRNA m(5)C 967 methyltransferase [Streptococcus pyogenes
           MGAS10270]
          Length = 440

 Score = 59.7 bits (144), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 24/115 (20%), Positives = 48/115 (41%), Gaps = 4/115 (3%)

Query: 37  TTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWS 96
             E I +   Y   A  +          D      I++G + RK  ++  ++  + ++  
Sbjct: 16  VIEAIFDQGAYTNIALNQQLSNKALSAKDRALLTEIVYGTVSRKISLEWYLAHYVKDR-- 73

Query: 97  FSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEP-KFINAVL 150
             +LD  +  +L   + +LI    +P   I+++ V IA +        KF+NA+L
Sbjct: 74  -DKLDKWVYYLLMLSLYQLIYLDKLPAHAIVNDAVGIAKNRGNKKGAEKFVNAIL 127


>gi|2982469|emb|CAA18233.1| putative protein [Arabidopsis thaliana]
 gi|7269489|emb|CAB79492.1| putative protein [Arabidopsis thaliana]
          Length = 286

 Score = 59.7 bits (144), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 31/189 (16%), Positives = 55/189 (29%), Gaps = 52/189 (27%)

Query: 17  GIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELD-------------------- 56
             AR  A+  LY   + G     +  +    R     E D                    
Sbjct: 83  RAARELALVILYAACLEGSDPIRLFEKRINARREPGYEFDKSSLLEYNHMSFGGPPVKTE 142

Query: 57  --------------------------VESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSC 90
                                      + VY  + L + + ++  V+D+     ++I   
Sbjct: 143 TKEEEDELVRHDEKESKIEAEVLSAPPKLVYSKLVLRFAKKLLAAVVDKWDSHVVIIEKI 202

Query: 91  LTEKW---SFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFIN 147
               W      R+  +  SIL   + E +        ++I+E V +A  F  G  P+ IN
Sbjct: 203 SPPDWKSAPAGRI--LEFSILHLAMSE-VAVLETRHPIVINEAVDLAKRFCDGSAPRIIN 259

Query: 148 AVLDKVSRK 156
             L    + 
Sbjct: 260 GCLRTFVKD 268


>gi|19746552|ref|NP_607688.1| 16S rRNA m(5)C 967 methyltransferase [Streptococcus pyogenes
           MGAS8232]
 gi|19748764|gb|AAL98187.1| putative RNA-binding Sun protein [Streptococcus pyogenes MGAS8232]
          Length = 440

 Score = 59.7 bits (144), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 24/115 (20%), Positives = 48/115 (41%), Gaps = 4/115 (3%)

Query: 37  TTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWS 96
             E I +   Y   A  +          D      I++G + RK  ++  ++  + ++  
Sbjct: 16  VIEAIFDQGAYTNIALNQQLSNKALSAKDRALLTEIVYGTVSRKISLEWYLAHYVKDR-- 73

Query: 97  FSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEP-KFINAVL 150
             +LD  +  +L   + +LI    +P   I+++ V IA +        KF+NA+L
Sbjct: 74  -DKLDKWVYYLLMLSLYQLIYLDKLPAHAIVNDAVGIAKNRGNKKGAEKFVNAIL 127


>gi|307297435|ref|ZP_07577241.1| NusB/RsmB/TIM44 [Thermotogales bacterium mesG1.Ag.4.2]
 gi|306916695|gb|EFN47077.1| NusB/RsmB/TIM44 [Thermotogales bacterium mesG1.Ag.4.2]
          Length = 334

 Score = 59.7 bits (144), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 33/147 (22%), Positives = 61/147 (41%), Gaps = 25/147 (17%)

Query: 19  ARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVE-SVYLHVDLEWFRVIIHGVM 77
           AR  A+Q L              S ++   + +  +LD+  S     D  +   II+G +
Sbjct: 4   ARSIALQTL--------------SFFDANGYISFRKLDIALSTLSSQDRSFCMNIIYGCL 49

Query: 78  DRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCI--AH 135
            ++  ID  +S  LT+    S+L   + + LR G  +++   S+P    +   V +    
Sbjct: 50  RKRVSIDFELSRFLTK---PSKLPHAVLNALRIGAFQILYMKSIPEYAALKSSVDMIGVK 106

Query: 136 DFFYGDEPKFINAVLDKVSRKEEIKRS 162
           +F        +NAVL K+  +   +R 
Sbjct: 107 EF-----KGLVNAVLRKLINEGPAERK 128


>gi|322412409|gb|EFY03317.1| Putative RNA-binding Sun protein [Streptococcus dysgalactiae subsp.
           dysgalactiae ATCC 27957]
          Length = 440

 Score = 59.7 bits (144), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 24/122 (19%), Positives = 53/122 (43%), Gaps = 6/122 (4%)

Query: 32  IIGCSTTEIISEYE--TYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISS 89
           I G +   + + ++   Y   A  +      +   D      I++G + RK  ++  ++ 
Sbjct: 9   IRGKALLTLENIFDQGAYTNIALNQQLSNKAFSAKDRALLTEIVYGTVSRKISLEWYLAH 68

Query: 90  CLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEP-KFINA 148
            + ++    +LD  +  +L   + +LI    +P   I+++ V IA +        KF+NA
Sbjct: 69  YVKDR---DKLDKWVYYLLMLSLYQLIYLDKLPAHAIVNDAVGIAKNRGNKKGAEKFVNA 125

Query: 149 VL 150
           +L
Sbjct: 126 IL 127


>gi|159037486|ref|YP_001536739.1| Fmu (Sun) domain-containing protein [Salinispora arenicola CNS-205]
 gi|157916321|gb|ABV97748.1| Fmu (Sun) domain protein [Salinispora arenicola CNS-205]
          Length = 508

 Score = 59.7 bits (144), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 20/89 (22%), Positives = 36/89 (40%), Gaps = 4/89 (4%)

Query: 65  DLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVE 124
           D  +   + +G +     +D +++         +R+D  +   LR G  +L+    VP  
Sbjct: 97  DAAFATELTYGTLRHLGTLDAILTDA--AGREVARIDPPVRDALRLGAYQLLHTR-VPAH 153

Query: 125 VIISEYVCIAHDFFYGDEPKFINAVLDKV 153
             +S  V +      G    F NAVL +V
Sbjct: 154 AAVSSTVDLVRSVGPG-ATGFANAVLREV 181


>gi|94994842|ref|YP_602940.1| 16S rRNA m(5)C 967 methyltransferase [Streptococcus pyogenes
           MGAS10750]
 gi|94548350|gb|ABF38396.1| 16S rRNA m(5)C 967 methyltransferase [Streptococcus pyogenes
           MGAS10750]
          Length = 440

 Score = 59.7 bits (144), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 24/115 (20%), Positives = 48/115 (41%), Gaps = 4/115 (3%)

Query: 37  TTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWS 96
             E I +   Y   A  +          D      I++G + RK  ++  ++  + ++  
Sbjct: 16  VIEAIFDQGAYTNIALNQQLSSKALSAKDRALLTEIVYGTVSRKISLEWYLAHYVKDR-- 73

Query: 97  FSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEP-KFINAVL 150
             +LD  +  +L   + +LI    +P   I+++ V IA +        KF+NA+L
Sbjct: 74  -DKLDKWVYYLLMLSLYQLIYLDKLPAHAIVNDAVGIAKNRGNKKGAEKFVNAIL 127


>gi|34763758|ref|ZP_00144676.1| 16S rRNA m(5)C 967 methyltransferase [Fusobacterium nucleatum
           subsp. vincentii ATCC 49256]
 gi|27886472|gb|EAA23729.1| 16S rRNA m(5)C 967 methyltransferase [Fusobacterium nucleatum
           subsp. vincentii ATCC 49256]
          Length = 190

 Score = 59.3 bits (143), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 19/99 (19%), Positives = 41/99 (41%), Gaps = 12/99 (12%)

Query: 65  DLEWFRVIIHGVMDRKQHIDLLISSC---LTEKWSFSRLDMILCSILRAGVLELIECHSV 121
           +  +   I +GV+  K+ +D +I      + ++W        + ++LR  + ++    S 
Sbjct: 37  EKAFITEIFYGVIRNKKFLDYIIEKNTKEIKKEW--------IRNLLRISIYQITFMDSD 88

Query: 122 PVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIK 160
              V+  E   +A   +     KFIN  L    R ++ +
Sbjct: 89  NKGVVW-EATELAKKKYGVPISKFINGTLRNYLRNKDSE 126


>gi|229019063|ref|ZP_04175901.1| Ribosomal RNA small subunit methyltransferase B [Bacillus cereus
           AH1273]
 gi|228742231|gb|EEL92393.1| Ribosomal RNA small subunit methyltransferase B [Bacillus cereus
           AH1273]
          Length = 369

 Score = 59.3 bits (143), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 13/50 (26%), Positives = 22/50 (44%)

Query: 107 ILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRK 156
           +LR  + +++    VP    I E V IA    +      +N VL  + R+
Sbjct: 2   LLRLSLYQMLYLDRVPERAAIHEAVEIAKRRGHKGISGMVNGVLRSIQRE 51


>gi|170782379|ref|YP_001710712.1| putative Sun-family protein [Clavibacter michiganensis subsp.
           sepedonicus]
 gi|169156948|emb|CAQ02117.1| conserved hypothetical Sun-family protein [Clavibacter
           michiganensis subsp. sepedonicus]
          Length = 488

 Score = 59.3 bits (143), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 22/122 (18%), Positives = 42/122 (34%), Gaps = 3/122 (2%)

Query: 36  STTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKW 95
                + E + Y           +     D      + +G +    + D +I   L    
Sbjct: 41  EVVSAVRESDAYANLLLPVRIRRAALSAQDAALATELTYGTLRMSGYYDRVIE--LAAGR 98

Query: 96  SFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSR 155
             + +D  +  +LR  V +L+    V     ++E V +A          F+N VL  ++R
Sbjct: 99  PVTAIDAPILDVLRLSVHQLLSMR-VATHAAVNEGVDMARAVGSRSATGFVNGVLRTITR 157

Query: 156 KE 157
            E
Sbjct: 158 SE 159


>gi|15675503|ref|NP_269677.1| 16S rRNA m(5)C 967 methyltransferase [Streptococcus pyogenes M1
           GAS]
 gi|13622700|gb|AAK34398.1| putative RNA-binding Sun protein [Streptococcus pyogenes M1 GAS]
          Length = 440

 Score = 59.3 bits (143), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 23/115 (20%), Positives = 47/115 (40%), Gaps = 4/115 (3%)

Query: 37  TTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWS 96
             E I +   Y   A  +          D      I++G + RK  ++  ++  + ++  
Sbjct: 16  VIEAIFDQGAYTNIALNQQLSNKALSAKDRALLTEIVYGTVSRKISLEWYLAHYVKDR-- 73

Query: 97  FSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEP-KFINAVL 150
             +LD  +  +L   + +L     +P   I+++ V IA +        KF+NA+L
Sbjct: 74  -DKLDKWVYYLLMLSLYQLTYLDKLPAHAIVNDAVGIAKNRGNKKGAEKFVNAIL 127


>gi|94988962|ref|YP_597063.1| 16S rRNA m(5)C 967 methyltransferase [Streptococcus pyogenes
           MGAS9429]
 gi|94992855|ref|YP_600954.1| 16S rRNA m(5)C 967 methyltransferase [Streptococcus pyogenes
           MGAS2096]
 gi|94542470|gb|ABF32519.1| 16S rRNA m(5)C 967 methyltransferase [Streptococcus pyogenes
           MGAS9429]
 gi|94546363|gb|ABF36410.1| 16S rRNA m(5)C 967 methyltransferase [Streptococcus pyogenes
           MGAS2096]
          Length = 440

 Score = 59.3 bits (143), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 23/115 (20%), Positives = 47/115 (40%), Gaps = 4/115 (3%)

Query: 37  TTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWS 96
             E I +   Y   A  +          D      I++G + RK  ++  ++  + ++  
Sbjct: 16  VIEAIFDQGAYTNIALNQQLSNKALSAKDRALLTEIVYGTVSRKISLEWYLAHYVKDR-- 73

Query: 97  FSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEP-KFINAVL 150
             +LD  +  +L   + +L     +P   I+++ V IA +        KF+NA+L
Sbjct: 74  -DKLDKWVYYLLMLSLYQLTYLDKLPAHAIVNDAVGIAKNRGNKKGAEKFVNAIL 127


>gi|259503543|ref|ZP_05746445.1| RNA methyltransferase Sun [Lactobacillus antri DSM 16041]
 gi|259168621|gb|EEW53116.1| RNA methyltransferase Sun [Lactobacillus antri DSM 16041]
          Length = 448

 Score = 59.3 bits (143), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 26/145 (17%), Positives = 55/145 (37%), Gaps = 15/145 (10%)

Query: 12  LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71
           +++++  AR  A+ AL           + +     Y      +L  +      D      
Sbjct: 1   MTNKKMTAREVALTAL-----------DRVRRRGAYSNLQLNQLLSKHQLNDNDRRLATR 49

Query: 72  IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
           I++G + R+  ++  +   +  K    +LD  + ++L   + +      VP   +  E +
Sbjct: 50  IVYGTLQRQLTLEYWLQPFVKGK----KLDSWVETLLLTALYQYQYLERVPDWAVTDETI 105

Query: 132 CIAHDFFYGDEPKFINAVLDKVSRK 156
            IA  +      KF+  VL  V R+
Sbjct: 106 EIAKQWGNPGIRKFVTGVLHAVLRQ 130


>gi|241895667|ref|ZP_04782963.1| RNA methyltransferase [Weissella paramesenteroides ATCC 33313]
 gi|241871034|gb|EER74785.1| RNA methyltransferase [Weissella paramesenteroides ATCC 33313]
          Length = 456

 Score = 59.3 bits (143), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 19/132 (14%), Positives = 48/132 (36%), Gaps = 9/132 (6%)

Query: 30  IDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLE-----WFRVIIHGVMDRKQHID 84
            ++       +    E  +  A + L ++S+    DL          +++GV+  +  ++
Sbjct: 12  WELTNPRALSV-RVLEKVQNGAYSNLQLDSMIKQADLSEKNVHLMTTMVYGVIQHRLTLE 70

Query: 85  LLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPK 144
             +   + +          +  +L   + ++     +P   I  E + IA    +    K
Sbjct: 71  YWLIPFIKQPQKLE---SWVRELLYISIFQMQYLDKIPDHAIFDEAINIAKRRGHDGTRK 127

Query: 145 FINAVLDKVSRK 156
           F+  VL  + R+
Sbjct: 128 FVTGVLHAIQRQ 139


>gi|21910907|ref|NP_665175.1| 16S rRNA m(5)C 967 methyltransferase [Streptococcus pyogenes
           MGAS315]
 gi|28895403|ref|NP_801753.1| 16S rRNA m(5)C 967 methyltransferase [Streptococcus pyogenes SSI-1]
 gi|71911150|ref|YP_282700.1| 16S rRNA m(5)C 967 methyltransferase [Streptococcus pyogenes
           MGAS5005]
 gi|209559767|ref|YP_002286239.1| Putative RNA-binding Sun protein [Streptococcus pyogenes NZ131]
 gi|306826944|ref|ZP_07460244.1| ribosomal RNA small subunit methyltransferase B [Streptococcus
           pyogenes ATCC 10782]
 gi|21905113|gb|AAM79978.1| putative RNA-binding Sun protein [Streptococcus pyogenes MGAS315]
 gi|28810649|dbj|BAC63586.1| putative RNA-binding Sun protein [Streptococcus pyogenes SSI-1]
 gi|71853932|gb|AAZ51955.1| 16S rRNA m(5)C 967 methyltransferase [Streptococcus pyogenes
           MGAS5005]
 gi|209540968|gb|ACI61544.1| Putative RNA-binding Sun protein [Streptococcus pyogenes NZ131]
 gi|304430962|gb|EFM33971.1| ribosomal RNA small subunit methyltransferase B [Streptococcus
           pyogenes ATCC 10782]
          Length = 440

 Score = 59.3 bits (143), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 23/115 (20%), Positives = 47/115 (40%), Gaps = 4/115 (3%)

Query: 37  TTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWS 96
             E I +   Y   A  +          D      I++G + RK  ++  ++  + ++  
Sbjct: 16  VIEAIFDQGAYTNIALNQQLSNKALSAKDRALLTEIVYGTVSRKISLEWYLAHYVKDR-- 73

Query: 97  FSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEP-KFINAVL 150
             +LD  +  +L   + +L     +P   I+++ V IA +        KF+NA+L
Sbjct: 74  -DKLDKWVYYLLMLSLYQLTYLDKLPAHAIVNDAVGIAKNRGNKKGAEKFVNAIL 127


>gi|227496158|ref|ZP_03926464.1| rRNA (cytosine-C(5)-)-methyltransferase [Actinomyces urogenitalis
           DSM 15434]
 gi|226834303|gb|EEH66686.1| rRNA (cytosine-C(5)-)-methyltransferase [Actinomyces urogenitalis
           DSM 15434]
          Length = 527

 Score = 59.3 bits (143), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 31/160 (19%), Positives = 63/160 (39%), Gaps = 20/160 (12%)

Query: 4   QDNKKDLKLSHRRG------IARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDV 57
           Q  + D + S+RR        ARL +++AL             + +   +       +  
Sbjct: 44  QRGQADAEGSNRRRRPSTVDAARLVSLEAL-----------TKVRQDGGFANLVLPPMLD 92

Query: 58  ESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIE 117
            +     D  +   + +G +  +   D +I+ C+       +LD ++  +LR G  +L+ 
Sbjct: 93  AARLDRRDAGFATALTYGTLRLQGRYDAIIAQCVDR--RLDQLDGVVLDVLRLGTHQLLG 150

Query: 118 CHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKE 157
              V     +S  V +A           +NAVL ++S+K+
Sbjct: 151 MR-VATHAAVSATVDLASHAAGRGAAGLVNAVLRRISQKD 189


>gi|302817774|ref|XP_002990562.1| hypothetical protein SELMODRAFT_47116 [Selaginella moellendorffii]
 gi|300141730|gb|EFJ08439.1| hypothetical protein SELMODRAFT_47116 [Selaginella moellendorffii]
          Length = 196

 Score = 59.3 bits (143), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 26/184 (14%), Positives = 51/184 (27%), Gaps = 46/184 (25%)

Query: 17  GIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTE---------------------- 54
             AR  ++  LY   + G    E++ +    R     E                      
Sbjct: 12  RAARELSLCVLYAGLVSGSDPLEVLEDRMQARRERVDEKVLDQYDHDAKSGEPLYVSCES 71

Query: 55  -----LDVESVYLHVDLEWF-----------------RVIIHGVMDRKQHIDLLISSCLT 92
                   +     +D                       II    + ++  + ++   L 
Sbjct: 72  EAKELEFQQEQQSEIDAALLTAHPCVVYNKFVLRYGKEKIIKATSEGREKQEAVVKELLP 131

Query: 93  EKWSFSRLDMI-LCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLD 151
             W       +   +I+   + E+ E       ++I+E V +A  F  G  P+ +N  L 
Sbjct: 132 STWKDESNGKLLETTIMHMAIAEI-EVLGTSPNIVINEAVELAKRFCDGFAPRVVNGCLG 190

Query: 152 KVSR 155
              R
Sbjct: 191 NYFR 194


>gi|297799366|ref|XP_002867567.1| antitermination NusB domain-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297313403|gb|EFH43826.1| antitermination NusB domain-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 300

 Score = 59.3 bits (143), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 31/189 (16%), Positives = 55/189 (29%), Gaps = 52/189 (27%)

Query: 17  GIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELD-------------------- 56
             AR  A+  LY   + G     +  +    R     E D                    
Sbjct: 97  RAARELALVILYAACLEGSDPIRLFEKRINARREPGYEFDKTSLLEYNHMSFGGPPVKTE 156

Query: 57  --------------------------VESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSC 90
                                      + VY  + L + + ++  V+D+     ++I   
Sbjct: 157 TKEEEDELVRHDEKESKIEAEVLSAPPKLVYSKLVLRFAKKLLAAVVDKWDSHVVIIEKI 216

Query: 91  LTEKW---SFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFIN 147
               W      R+  +  SIL   + E +        ++I+E V +A  F  G  P+ IN
Sbjct: 217 SPPDWKSAPAGRI--LEFSILHLAMSE-VAVLETRHPIVINEAVDLAKRFCDGSAPRIIN 273

Query: 148 AVLDKVSRK 156
             L    + 
Sbjct: 274 GCLRTFVKD 282


>gi|50914729|ref|YP_060701.1| 16S rRNA m(5)C 967 methyltransferase [Streptococcus pyogenes
           MGAS10394]
 gi|139473325|ref|YP_001128040.1| 16S rRNA m(5)C 967 methyltransferase [Streptococcus pyogenes str.
           Manfredo]
 gi|50903803|gb|AAT87518.1| 16S rRNA m(5)C 967 methyltransferase [Streptococcus pyogenes
           MGAS10394]
 gi|134271571|emb|CAM29796.1| putative ribosomal RNA small subunit methyltransferase
           [Streptococcus pyogenes str. Manfredo]
          Length = 440

 Score = 59.3 bits (143), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 23/115 (20%), Positives = 47/115 (40%), Gaps = 4/115 (3%)

Query: 37  TTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWS 96
             E I +   Y   A  +          D      I++G + RK  ++  ++  + ++  
Sbjct: 16  VIEAIFDQGAYTNIALNQQLSNKALSAKDRALLTEIVYGTVSRKISLEWYLAHYVKDR-- 73

Query: 97  FSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEP-KFINAVL 150
             +LD  +  +L   + +L     +P   I+++ V IA +        KF+NA+L
Sbjct: 74  -DKLDKWVYYLLMLSLYQLTYLDKLPAHAIVNDAVGIAKNRGNKKGAEKFVNAIL 127


>gi|78042686|ref|YP_360313.1| sun protein [Carboxydothermus hydrogenoformans Z-2901]
 gi|77994801|gb|ABB13700.1| sun protein [Carboxydothermus hydrogenoformans Z-2901]
          Length = 440

 Score = 59.3 bits (143), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 23/142 (16%), Positives = 54/142 (38%), Gaps = 22/142 (15%)

Query: 20  RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79
           R   ++ L +++        ++ +               ++    D ++   + +GV+ +
Sbjct: 4   RELVIKTLVEVEKNNSYVNLLLPKLIA------------NLAKKEDKDFVVELTYGVLKQ 51

Query: 80  KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139
            + +D +    L ++   S+L   + + +R G+ +L     VP    I+E V        
Sbjct: 52  LKLLDYMAGKLLKKR---SKLPPFVINAIRVGLYQLYFLDKVPTYAAINETVEAVKR--- 105

Query: 140 GDEPKF---INAVLDKVSRKEE 158
            +   F   +N VL    R+ E
Sbjct: 106 -NYRGFTGVVNGVLRNFIRRRE 126


>gi|158313556|ref|YP_001506064.1| Fmu (Sun) domain-containing protein [Frankia sp. EAN1pec]
 gi|158108961|gb|ABW11158.1| Fmu (Sun) domain protein [Frankia sp. EAN1pec]
          Length = 495

 Score = 59.3 bits (143), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 27/155 (17%), Positives = 54/155 (34%), Gaps = 19/155 (12%)

Query: 10  LKLSHRRG-----IARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHV 64
           + +S  R       ARL A       ++        + E   Y       L         
Sbjct: 1   MSVSAPRRGGTTDPARLLA------WEV-----LRAVDERGAYANLLLPALLSGRRLSPR 49

Query: 65  DLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVE 124
           D  +   + +G +  +  +D ++ +  +     + +D  +   LR G  +L+    VP  
Sbjct: 50  DRGFATELTYGSLRAQGTLDGVLDTVTSR--PVASVDPPVRDALRLGAYQLLSTR-VPPR 106

Query: 125 VIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEI 159
             ++  V +          +F NAVL +V+ + E 
Sbjct: 107 AAVASTVDLVRATCGERPVRFANAVLRRVAARIEA 141


>gi|325672533|ref|ZP_08152229.1| RNA methyltransferase Sun [Rhodococcus equi ATCC 33707]
 gi|325556410|gb|EGD26076.1| RNA methyltransferase Sun [Rhodococcus equi ATCC 33707]
          Length = 495

 Score = 59.3 bits (143), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 32/156 (20%), Positives = 54/156 (34%), Gaps = 11/156 (7%)

Query: 6   NKKDLKLSHRRGIARLAAVQALYQIDI---IGCSTTEIISEYETYRFCADTELDVESVYL 62
            +++ +    R   R  A QA   ID            + E + Y       L  E    
Sbjct: 30  GRRNERPKQAR---RPDAAQA--SIDQPRRAARDVLRAVRERDAYANLVLPGLLRERRLD 84

Query: 63  HVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVP 122
             D      + +G    +  +D +I+ C         +D  L  +L  G  +L+     P
Sbjct: 85  GRDAALATELAYGAARARGLLDAVIAEC--AGRPVEEIDGPLLDVLELGAYQLLRTRIAP 142

Query: 123 VEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEE 158
              + +  V +        +  F+NAVL +VS K E
Sbjct: 143 HAAVAT-SVDLVRAEAGPGKAGFVNAVLRRVSEKTE 177


>gi|116495106|ref|YP_806840.1| tRNA and rRNA cytosine-C5-methylase [Lactobacillus casei ATCC 334]
 gi|116105256|gb|ABJ70398.1| tRNA and rRNA cytosine-C5-methylase [Lactobacillus casei ATCC 334]
          Length = 446

 Score = 59.0 bits (142), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 19/106 (17%), Positives = 42/106 (39%), Gaps = 5/106 (4%)

Query: 65  DLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVE 124
           D      I++GV+ R+  +D  ++  +  +    +LD  +  +L   V +L     VP  
Sbjct: 41  DAGLLTNIVYGVIQRQLTLDFYLAPFIKGR----KLDNWIRCLLDTAVYQLQYLDKVPAR 96

Query: 125 VIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRSGCVSAITQ 170
            +  +   IA    +    KF+  VL   +++        ++   +
Sbjct: 97  AVFFDSTEIAKKLGHQGIAKFVTGVLRN-AQRTGFPDPAAIADPVK 141


>gi|332638217|ref|ZP_08417080.1| 16S rRNA methyltransferase B [Weissella cibaria KACC 11862]
          Length = 457

 Score = 59.0 bits (142), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 22/133 (16%), Positives = 52/133 (39%), Gaps = 9/133 (6%)

Query: 29  QIDIIGCSTTEIISEYETYRFCADTELDVESVYLHV-----DLEWFRVIIHGVMDRKQHI 83
           + ++       +    E  R  A + L + +          D+     +++GV+ R+  +
Sbjct: 11  EWELHNARAMAV-RTLEKIRNGAYSNLQLNNTVKQAELDERDVHLMTTMVYGVIQRRMTL 69

Query: 84  DLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEP 143
           +  ++  + +     +LD  +  +L   + ++     VP   I  E + IA    +    
Sbjct: 70  EYWLTPFVKK---PEKLDAWVRELLYISLFQMKFLDKVPTHAIFDEAINIAKRRGHDGVR 126

Query: 144 KFINAVLDKVSRK 156
           KF+  VL  + R+
Sbjct: 127 KFVTGVLHAIDRE 139


>gi|227872150|ref|ZP_03990520.1| possible rRNA (cytosine-5-)-methyltransferase [Oribacterium sinus
           F0268]
 gi|227842008|gb|EEJ52268.1| possible rRNA (cytosine-5-)-methyltransferase [Oribacterium sinus
           F0268]
          Length = 449

 Score = 59.0 bits (142), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 26/90 (28%), Positives = 43/90 (47%), Gaps = 3/90 (3%)

Query: 74  HGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCI 133
           HG+++R   +D +IS   + K    +L  ++   LR  + +L+    +P   I+ E V  
Sbjct: 90  HGILERYLQLDYVISLYSSVK--LKKLKPVVLLSLRIAIYQLLFMDKIPEHAIVDEAVKS 147

Query: 134 AHDFFYGDEPKFINAVLDKVS-RKEEIKRS 162
                      F+NAVL K+   KEEIK+ 
Sbjct: 148 IKKRKLQGLVPFVNAVLRKIVGEKEEIKKK 177


>gi|58337594|ref|YP_194179.1| rRNA methylase [Lactobacillus acidophilus NCFM]
 gi|58254911|gb|AAV43148.1| rRNA methylase [Lactobacillus acidophilus NCFM]
          Length = 455

 Score = 59.0 bits (142), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 20/99 (20%), Positives = 39/99 (39%), Gaps = 14/99 (14%)

Query: 64  VDLEWFRVIIHGVMDRKQ----HIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECH 119
            D      I++G +  +      ++ LI + LTEK+        +  +L   + ++I   
Sbjct: 53  ADQNLATRIVYGTIQYRIFLEYQLNGLIKTKLTEKY--------IKPLLLMSLYQIIFLD 104

Query: 120 SVPVEVIISEYVCIAHDFFYGDEPKF--INAVLDKVSRK 156
            VP   I+ E   +A  F       +  +N +L    R+
Sbjct: 105 KVPNRAILDEANKLAKKFGKHHSSGYRIVNGILRSFIRR 143


>gi|111024114|ref|YP_707086.1| ribosomal RNA small subunit methyltransferase [Rhodococcus jostii
           RHA1]
 gi|110823644|gb|ABG98928.1| ribosomal RNA small subunit methyltransferase [Rhodococcus jostii
           RHA1]
          Length = 475

 Score = 59.0 bits (142), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 30/149 (20%), Positives = 54/149 (36%), Gaps = 4/149 (2%)

Query: 13  SHRRGIARLAAVQ-ALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71
           +  R   R  A Q  L Q  +        + E + Y       L  E      D      
Sbjct: 20  NRPRQARRPDASQSGLDQPRLAARDVLRAVRERDAYANLVLPGLLRERRLDGRDAALATE 79

Query: 72  IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
           + +G    +  +D +I+ C       + +D  L  +L+ G  +L+     P   + +  V
Sbjct: 80  LAYGAARARGLLDAVIADC--AGRPIAEIDGPLLDVLQLGAYQLLRTRVAPHAAVAT-SV 136

Query: 132 CIAHDFFYGDEPKFINAVLDKVSRKEEIK 160
            +        +  F+NAVL +VS + E +
Sbjct: 137 DLVRAEAGPGKAGFVNAVLRRVSERSEAE 165


>gi|227904234|ref|ZP_04022039.1| rRNA SAM-dependent methyltransferase RmsB [Lactobacillus
           acidophilus ATCC 4796]
 gi|227867882|gb|EEJ75303.1| rRNA SAM-dependent methyltransferase RmsB [Lactobacillus
           acidophilus ATCC 4796]
          Length = 446

 Score = 59.0 bits (142), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 20/99 (20%), Positives = 39/99 (39%), Gaps = 14/99 (14%)

Query: 64  VDLEWFRVIIHGVMDRKQ----HIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECH 119
            D      I++G +  +      ++ LI + LTEK+        +  +L   + ++I   
Sbjct: 44  ADQNLATRIVYGTIQYRIFLEYQLNGLIKTKLTEKY--------IKPLLLMSLYQIIFLD 95

Query: 120 SVPVEVIISEYVCIAHDFFYGDEPKF--INAVLDKVSRK 156
            VP   I+ E   +A  F       +  +N +L    R+
Sbjct: 96  KVPNRAILDEANKLAKKFGKHHSSGYRIVNGILRSFIRR 134


>gi|169629894|ref|YP_001703543.1| Fmu protein (SUN protein) [Mycobacterium abscessus ATCC 19977]
 gi|169241861|emb|CAM62889.1| Probable Fmu protein (SUN protein) [Mycobacterium abscessus]
          Length = 471

 Score = 59.0 bits (142), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 37/163 (22%), Positives = 64/163 (39%), Gaps = 20/163 (12%)

Query: 2   TIQDNKKDLKLSHR-RGIA---RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDV 57
           + QD+++    + R R      R AA+  L             +S  + Y   A   L  
Sbjct: 10  SNQDSRRSAGPAERARRKLDPPRQAALDVL-----------RAVSRQDAYANLALPALLR 58

Query: 58  ESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIE 117
           E      D  +   + +G    +  +D +I +      +  ++D  L   LR G  +L+ 
Sbjct: 59  ERGITGRDAAFATELTYGTCRARGLLDAVIEAA--AGRTIDQVDEGLRDPLRLGAYQLL- 115

Query: 118 CHSVPVEVIISEYVC-IAHDFFYGDEPKFINAVLDKVSRKEEI 159
              V     +S  V  +A +F  G    F+NAVL  +SR++E 
Sbjct: 116 RTRVEPHAALSTTVDAVAVEFDQGR-AGFVNAVLRTISRRDEA 157


>gi|256845813|ref|ZP_05551271.1| ribosomal RNA small subunit methyltransferase B [Fusobacterium sp.
           3_1_36A2]
 gi|256719372|gb|EEU32927.1| ribosomal RNA small subunit methyltransferase B [Fusobacterium sp.
           3_1_36A2]
          Length = 435

 Score = 59.0 bits (142), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 18/99 (18%), Positives = 42/99 (42%), Gaps = 12/99 (12%)

Query: 65  DLEWFRVIIHGVMDRKQHIDLLISSC---LTEKWSFSRLDMILCSILRAGVLELIECHSV 121
           +  +   I +GV+  K+ +D +I      + ++W        + ++LR  + ++      
Sbjct: 37  EKAFITEIFYGVIRNKKFLDYIIEKNTKEIKKEW--------IRNLLRISIYQITFM-DS 87

Query: 122 PVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIK 160
             + I+ E   +A   +     KFIN  L    R ++++
Sbjct: 88  DNKGIVWEATELAKKKYGVPISKFINGTLRNYLRNKDLE 126


>gi|291280368|ref|YP_003497203.1| tRNA/rRNA methyltransferase [Deferribacter desulfuricans SSM1]
 gi|290755070|dbj|BAI81447.1| tRNA/rRNA methyltransferase [Deferribacter desulfuricans SSM1]
          Length = 389

 Score = 59.0 bits (142), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 18/106 (16%), Positives = 42/106 (39%), Gaps = 9/106 (8%)

Query: 54  ELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVL 113
           EL  +  +     +++R I          I  +++S L ++     +       L  G  
Sbjct: 25  ELKEDFFHDSPYRKFYRKIYFETFKHLGFIQYILTSYLKKETPIESIAA-----LTLGTA 79

Query: 114 ELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEI 159
           +++    +P    ++E V +      G +   +NAVL +++  +E 
Sbjct: 80  QILFLSDIPEYAAVNESVNLVK----GKQKSLVNAVLRRIASNKEA 121


>gi|224541737|ref|ZP_03682276.1| hypothetical protein CATMIT_00909 [Catenibacterium mitsuokai DSM
           15897]
 gi|224525341|gb|EEF94446.1| hypothetical protein CATMIT_00909 [Catenibacterium mitsuokai DSM
           15897]
          Length = 439

 Score = 59.0 bits (142), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 17/124 (13%), Positives = 48/124 (38%), Gaps = 8/124 (6%)

Query: 35  CSTTEIISEYETYRFCADTELD--VESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLT 92
            +  +I+ +YE      +  L+  +   +   +      +++G +  + +++  +   + 
Sbjct: 30  DTALDILIDYEKNESYLNITLNHTLTQDFSPSERGLITTLVYGTIQNRLYLEYQLEPHIH 89

Query: 93  EKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDK 152
                +RL ++   +L   + +       P   I++E V I  +         INA+L  
Sbjct: 90  -----TRLKVVEKMLLLMSLYQ-HFYLDTPDYAIVNEAVEIIKERRNKRAGGMINAILHS 143

Query: 153 VSRK 156
             ++
Sbjct: 144 CFKE 147


>gi|300784671|ref|YP_003764962.1| ribosomal RNA small subunit methyltransferase B [Amycolatopsis
           mediterranei U32]
 gi|299794185|gb|ADJ44560.1| ribosomal RNA small subunit methyltransferase B [Amycolatopsis
           mediterranei U32]
          Length = 474

 Score = 58.6 bits (141), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 33/161 (20%), Positives = 53/161 (32%), Gaps = 19/161 (11%)

Query: 3   IQDNKKDLKLSHRRGI-----ARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDV 57
            Q  +   +    R       AR AA   L             +   + Y      +L  
Sbjct: 12  PQRGRPAPRKEGPRRPPEVDPARQAAFDVL-----------AAVRTKDAYANLVLPDLLR 60

Query: 58  ESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIE 117
           E      D      + +G    +  +D +I SC        + D  +   LR GV +L+ 
Sbjct: 61  ERRITGRDAALATELTYGTSRAQGLLDAIIESCAER--PLKQTDPAVLDALRLGVYQLL- 117

Query: 118 CHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEE 158
              +P    ++  V +           F NA+L KVS K+E
Sbjct: 118 RTRIPEHAAVTSTVDLVRAEAGSWATGFANAILRKVSEKDE 158


>gi|257784669|ref|YP_003179886.1| NusB/RsmB/TIM44 [Atopobium parvulum DSM 20469]
 gi|257473176|gb|ACV51295.1| NusB/RsmB/TIM44 [Atopobium parvulum DSM 20469]
          Length = 463

 Score = 58.6 bits (141), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 25/153 (16%), Positives = 49/153 (32%), Gaps = 17/153 (11%)

Query: 19  ARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMD 78
           AR  A QA ++         + + E + +           S     D  +   +  G   
Sbjct: 7   ARKVAYQAFFECRRNNLCVRDYLRESKDF-----------SELSAQDKAFATRLALGATL 55

Query: 79  RKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFF 138
            K  +D  + + L           +  +  R  V E++       +  IS+ V +     
Sbjct: 56  TKGKLDEALKNHLKSGIHLE--PKVQDA-FRIAVFEVLY-LETRRDAAISQGVELVKSVS 111

Query: 139 YGDEPKFINAVLDKVSR-KEEIKRSGCVSAITQ 170
                   NAVL K+S  +  + R+      ++
Sbjct: 112 -KRSSGLANAVLRKISEHEANLARAKDPHTPSE 143


>gi|71904040|ref|YP_280843.1| 16S rRNA m(5)C 967 methyltransferase [Streptococcus pyogenes
           MGAS6180]
 gi|71803135|gb|AAX72488.1| 16S rRNA m(5)C 967 methyltransferase [Streptococcus pyogenes
           MGAS6180]
          Length = 452

 Score = 58.6 bits (141), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 24/113 (21%), Positives = 48/113 (42%), Gaps = 4/113 (3%)

Query: 39  EIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFS 98
           E I +   Y   A  +          D      I++G + RK  ++  ++  + ++    
Sbjct: 30  EHIFDQGAYTNIALNQQLSNKALSAKDRALLTEIVYGTVSRKISLEWYLAHYVKDR---D 86

Query: 99  RLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEP-KFINAVL 150
           +LD  +  +L   + +LI    +P   I+++ V IA +        KF+NA+L
Sbjct: 87  KLDKWVYYLLMLSLYQLIYLDKLPAHAIVNDAVGIAKNRGNKKGAEKFVNAIL 139


>gi|237742476|ref|ZP_04572957.1| 16S rRNA m(5)C 967 methyltransferase [Fusobacterium sp. 4_1_13]
 gi|294785012|ref|ZP_06750300.1| ribosomal RNA small subunit methyltransferase B [Fusobacterium sp.
           3_1_27]
 gi|229430124|gb|EEO40336.1| 16S rRNA m(5)C 967 methyltransferase [Fusobacterium sp. 4_1_13]
 gi|294486726|gb|EFG34088.1| ribosomal RNA small subunit methyltransferase B [Fusobacterium sp.
           3_1_27]
          Length = 435

 Score = 58.6 bits (141), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 19/99 (19%), Positives = 41/99 (41%), Gaps = 12/99 (12%)

Query: 65  DLEWFRVIIHGVMDRKQHIDLLISSC---LTEKWSFSRLDMILCSILRAGVLELIECHSV 121
           +  +   I +GV+  K+ +D +I      + ++W        + ++LR  + ++    S 
Sbjct: 37  EKAFITEIFYGVIRNKKFLDYIIEKNTKEIKKEW--------IRNLLRISIYQITFMDSD 88

Query: 122 PVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIK 160
              V+  E   +A   +     KFIN  L    R ++ +
Sbjct: 89  NKGVVW-EATELAKKKYGVPISKFINGTLRNYLRNKDSE 126


>gi|311742368|ref|ZP_07716177.1| RNA methyltransferase Sun [Aeromicrobium marinum DSM 15272]
 gi|311313996|gb|EFQ83904.1| RNA methyltransferase Sun [Aeromicrobium marinum DSM 15272]
          Length = 428

 Score = 58.6 bits (141), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 26/138 (18%), Positives = 48/138 (34%), Gaps = 14/138 (10%)

Query: 20  RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79
           R  A  AL             + E + Y       +  E      D  +   ++HG + R
Sbjct: 6   RAIAFHAL-----------RAVDERDAYVNLVLPAMLDEHHLEGRDAAFATELVHGTVRR 54

Query: 80  KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139
           +   D +I          + +D  +   LR G  +L+    VP    +S  V +      
Sbjct: 55  QGTYDAIIRQ--VSGRDLASIDPPVLDALRLGAHQLLSMR-VPAHAAVSTTVDVVRREIG 111

Query: 140 GDEPKFINAVLDKVSRKE 157
                F+NA+L ++  ++
Sbjct: 112 HKPVGFVNALLRRIGAQD 129


>gi|302341793|ref|YP_003806322.1| sun protein [Desulfarculus baarsii DSM 2075]
 gi|301638406|gb|ADK83728.1| sun protein [Desulfarculus baarsii DSM 2075]
          Length = 443

 Score = 58.6 bits (141), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 24/149 (16%), Positives = 51/149 (34%), Gaps = 15/149 (10%)

Query: 20  RLAAVQALYQIDIIGCSTTEIISE-YETYRFCADTELDVESVYLHVDLEWFRVIIHGVMD 78
           RL A+  L Q++       +++S  ++ +                 D      + H V+ 
Sbjct: 4   RLTALDVLVQLESSPKHLDKLLSRAFQRH-----------PAAQARDKAMATNLTHTVLR 52

Query: 79  RKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFF 138
            +  +D L++  ++     ++LD  + + LR G  EL+   + P    +   V       
Sbjct: 53  HRAWLDHLLTPLVSR--PLAKLDAPVRAALRLGAAELV-VLATPAHAAVGATVEAVKAGP 109

Query: 139 YGDEPKFINAVLDKVSRKEEIKRSGCVSA 167
                  +N VL  ++R            
Sbjct: 110 AAKASGLVNGVLRALTRALPAAAQAEPPG 138


>gi|309806256|ref|ZP_07700269.1| NusB family protein [Lactobacillus iners LactinV 03V1-b]
 gi|308167240|gb|EFO69406.1| NusB family protein [Lactobacillus iners LactinV 03V1-b]
          Length = 284

 Score = 58.6 bits (141), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 26/149 (17%), Positives = 51/149 (34%), Gaps = 29/149 (19%)

Query: 19  ARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMD 78
           AR  A+  L           +I  + ++Y   A      +S    +D      I++G + 
Sbjct: 5   ARSVALDTL----------LKIFKQ-KSYSNIALNNALEKSQLSPIDKALTTQIVYGTVQ 53

Query: 79  RKQHID----LLISSCLTEK--WSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVC 132
            K +++     L+ + L E   W            L     +      +P   I+ E   
Sbjct: 54  YKLYLEYQLKSLVKTKLKEDYLWPL----------LLMSAYQYFFLDKIPTASIVDEANK 103

Query: 133 IAHDFF--YGDEPKFINAVLDKVSRKEEI 159
           +A  +        + +N +L  + R+ EI
Sbjct: 104 LAKSYSPKGSQSYRLVNGILRSLVRRGEI 132


>gi|253582362|ref|ZP_04859585.1| rRNA methyltransferase [Fusobacterium varium ATCC 27725]
 gi|251835901|gb|EES64439.1| rRNA methyltransferase [Fusobacterium varium ATCC 27725]
          Length = 432

 Score = 58.6 bits (141), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 24/119 (20%), Positives = 48/119 (40%), Gaps = 12/119 (10%)

Query: 43  EYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLT---EKWSFSR 99
           E   Y   A  E   E++    +  +   + +GV+ +K  +D  I+  ++   + W    
Sbjct: 15  ENGKYSNIALNEYFKENILNRKERGFITELFYGVIRKKIFLDYEINKRVSSIKKDW---- 70

Query: 100 LDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEE 158
               + ++LR  + ++    S    V+  E   +A   F     KF+N VL    R+ +
Sbjct: 71  ----IRNLLRISIYQITFMKSDNKGVVW-EASELAKKKFGVPVGKFVNGVLRGYLREMD 124


>gi|329894840|ref|ZP_08270640.1| Ribosomal RNA small subunit methyltransferase B [gamma
           proteobacterium IMCC3088]
 gi|328922734|gb|EGG30068.1| Ribosomal RNA small subunit methyltransferase B [gamma
           proteobacterium IMCC3088]
          Length = 425

 Score = 58.6 bits (141), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 27/151 (17%), Positives = 60/151 (39%), Gaps = 19/151 (12%)

Query: 17  GIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGV 76
            IARL+AV+A           +++++ +       D  LD +         +   +  G 
Sbjct: 4   SIARLSAVRA----------VSQVLTGHAIRVSDFDQGLDPQQ------KAFAHQLAQGT 47

Query: 77  MDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHD 136
           ++    +  L++  L++       ++   +IL  G+ ++      P    ++E V +A  
Sbjct: 48  INALPRLSGLLNQLLSKPIKPKEAEV--HAILLTGLYQIEYMR-TPDHAAVNESVNLAKK 104

Query: 137 FFYGDEPKFINAVLDKVSRKEEIKRSGCVSA 167
                  K IN  L +  R+++  R+   +A
Sbjct: 105 LKKTWAIKLINGCLRRFLREQDTLRANLTTA 135


>gi|309809906|ref|ZP_07703754.1| NusB family protein [Lactobacillus iners SPIN 2503V10-D]
 gi|308169694|gb|EFO71739.1| NusB family protein [Lactobacillus iners SPIN 2503V10-D]
          Length = 284

 Score = 58.6 bits (141), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 25/149 (16%), Positives = 50/149 (33%), Gaps = 29/149 (19%)

Query: 19  ARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMD 78
           AR  A+  L           +I  +        +  L+ +S    +D      I++G + 
Sbjct: 5   ARSVALDTL----------LKIFKQKSYSNLALNNALE-KSKLSPIDKALTTQIVYGTVQ 53

Query: 79  RKQHID----LLISSCLTEK--WSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVC 132
            K +++     L+ + L E   W            L     +      +P   I+ E   
Sbjct: 54  YKLYLEYQLKSLVKTKLKEDYLWPL----------LLMSAYQYFFLDKIPTASIVDEANK 103

Query: 133 IAHDFF--YGDEPKFINAVLDKVSRKEEI 159
           +A  +        + +N +L  + R+ EI
Sbjct: 104 LAKSYSPKGSQSYRLVNGILRSLVRRGEI 132


>gi|229493567|ref|ZP_04387352.1| Fmu protein [Rhodococcus erythropolis SK121]
 gi|229319528|gb|EEN85364.1| Fmu protein [Rhodococcus erythropolis SK121]
          Length = 482

 Score = 58.6 bits (141), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 22/129 (17%), Positives = 44/129 (34%), Gaps = 3/129 (2%)

Query: 32  IIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCL 91
           +        + E + Y       L  +      D      + +G    +  +D +I+   
Sbjct: 45  LAARDVLRAVRERDAYANLVLPGLLRDRKLDARDAALATELAYGAARAQGLLDAVIAHA- 103

Query: 92  TEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLD 151
                   +D  L  +LR G  +L+     P   + +  V +           F+NAVL 
Sbjct: 104 -AGRPIEEIDGTLLDVLRLGSYQLLRTRVAPHAAVAT-SVDLVRAENGQGRAGFVNAVLR 161

Query: 152 KVSRKEEIK 160
           +VS + + +
Sbjct: 162 RVSERTQEE 170


>gi|315503248|ref|YP_004082135.1| fmu (sun) domain protein [Micromonospora sp. L5]
 gi|315409867|gb|ADU07984.1| Fmu (Sun) domain protein [Micromonospora sp. L5]
          Length = 541

 Score = 58.6 bits (141), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 19/100 (19%), Positives = 40/100 (40%), Gaps = 4/100 (4%)

Query: 58  ESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIE 117
           E+     D  +   + +G +     +D +++          R+D  +   LR G  +++ 
Sbjct: 123 EAGLTGRDAAFATELTYGTLRHTGTLDAIVTDA--AGRDVQRIDPPVRDALRLGAYQILH 180

Query: 118 CHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKE 157
              VP    +S  V +      G    F NAVL +++ ++
Sbjct: 181 TR-VPAHAAVSSTVDLVRSVGPG-ATGFANAVLREITSRD 218


>gi|56807939|ref|ZP_00365759.1| COG0144: tRNA and rRNA cytosine-C5-methylases [Streptococcus
           pyogenes M49 591]
          Length = 320

 Score = 58.6 bits (141), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 23/115 (20%), Positives = 47/115 (40%), Gaps = 4/115 (3%)

Query: 37  TTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWS 96
             E I +   Y   A  +          D      I++G + RK  ++  ++  + ++  
Sbjct: 16  VIEAIFDQGAYTNIALNQQLSNKALSAKDRALLTEIVYGTVSRKISLEWYLAHYVKDR-- 73

Query: 97  FSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEP-KFINAVL 150
             +LD  +  +L   + +L     +P   I+++ V IA +        KF+NA+L
Sbjct: 74  -DKLDKWVYYLLMLSLYQLTYLDKLPAHAIVNDAVGIAKNRGNKKGAEKFVNAIL 127


>gi|297746508|emb|CBI16564.3| unnamed protein product [Vitis vinifera]
          Length = 218

 Score = 58.6 bits (141), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 30/142 (21%), Positives = 54/142 (38%), Gaps = 16/142 (11%)

Query: 30  IDIIGCSTT-EIISEYETYRFCADTELDVES---------VYLHVDLEWFRVIIHGVMDR 79
           +   G   T E + E +      + E  +E+         VY  + L + R ++  V+D+
Sbjct: 64  MSFGGPPVTTETVEEADELLRNNEKESAIEAEVLSAPPKLVYGKLILRFTRKLLVAVVDK 123

Query: 80  KQHIDLLISSCLTEKWSFS---RLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHD 136
                L+I       W      R+  +   IL   + E+        +++I+E V +A  
Sbjct: 124 WNSHVLVIDKVAPPNWKNEPAGRI--LELCILHLAMSEI-AVLGTRHQIVINEAVDLAKR 180

Query: 137 FFYGDEPKFINAVLDKVSRKEE 158
           F  G  P+ IN  L    +  E
Sbjct: 181 FCDGAAPRIINGCLRTFVKDLE 202


>gi|302866833|ref|YP_003835470.1| Fmu (Sun) domain-containing protein [Micromonospora aurantiaca ATCC
           27029]
 gi|302569692|gb|ADL45894.1| Fmu (Sun) domain protein [Micromonospora aurantiaca ATCC 27029]
          Length = 549

 Score = 58.6 bits (141), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 19/100 (19%), Positives = 40/100 (40%), Gaps = 4/100 (4%)

Query: 58  ESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIE 117
           E+     D  +   + +G +     +D +++          R+D  +   LR G  +++ 
Sbjct: 131 EAGLTGRDAAFATELTYGTLRHTGTLDAIVTDA--AGRDVQRIDPPVRDALRLGAYQILH 188

Query: 118 CHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKE 157
              VP    +S  V +      G    F NAVL +++ ++
Sbjct: 189 TR-VPAHAAVSSTVDLVRSVGPG-ATGFANAVLREITSRD 226


>gi|254295350|ref|YP_003061373.1| Fmu (Sun) domain protein [Hirschia baltica ATCC 49814]
 gi|254043881|gb|ACT60676.1| Fmu (Sun) domain protein [Hirschia baltica ATCC 49814]
          Length = 487

 Score = 58.6 bits (141), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 32/152 (21%), Positives = 54/152 (35%), Gaps = 15/152 (9%)

Query: 18  IARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVM 77
            +R AA   L +I   G    E ++   + +F  + E          D  + R I    +
Sbjct: 62  QSRRAAADILMRIVHEGADMDEALA---SSKFFDELEGP--------DRGFARAIASAAL 110

Query: 78  DRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDF 137
                ID  + + L       ++D  + S+LR G  +L      P    +   V  A  +
Sbjct: 111 RAFGRIDDALETYLDR--PLEKIDPAVLSLLRVGCAQL-WVLKAPSYAAVDATVEAARQW 167

Query: 138 F-YGDEPKFINAVLDKVSRKEEIKRSGCVSAI 168
                    +NA+L +  R+ E   S   S I
Sbjct: 168 KPASRGGGMVNAILRRAGREPEAYESLPASRI 199


>gi|296327374|ref|ZP_06869923.1| ribosomal RNA small subunit methyltransferase B [Fusobacterium
           nucleatum subsp. nucleatum ATCC 23726]
 gi|296155489|gb|EFG96257.1| ribosomal RNA small subunit methyltransferase B [Fusobacterium
           nucleatum subsp. nucleatum ATCC 23726]
          Length = 435

 Score = 58.2 bits (140), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 19/99 (19%), Positives = 42/99 (42%), Gaps = 12/99 (12%)

Query: 65  DLEWFRVIIHGVMDRKQHIDLLISSC---LTEKWSFSRLDMILCSILRAGVLELIECHSV 121
           +  +   I +GV+  K+ +D +I      + ++W        + ++LR  + ++    S 
Sbjct: 37  EKAFITEIFYGVIRNKKFLDYIIEKNTKEIKKEW--------IRNLLRISIYQITFMDSD 88

Query: 122 PVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIK 160
              V+  E   +A   +     KFIN  L    R ++++
Sbjct: 89  DKGVVW-EGTELAKKKYGIPISKFINGTLRNYLRNKDLE 126


>gi|226306504|ref|YP_002766464.1| rRNA methyltransferase [Rhodococcus erythropolis PR4]
 gi|226185621|dbj|BAH33725.1| putative rRNA methyltransferase [Rhodococcus erythropolis PR4]
          Length = 482

 Score = 58.2 bits (140), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 22/127 (17%), Positives = 43/127 (33%), Gaps = 3/127 (2%)

Query: 32  IIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCL 91
           +        + E + Y       L  +      D      + +G    +  +D +I+   
Sbjct: 45  LAARDVLRAVRERDAYANLVLPGLLRDRKLDARDAALATELAYGAARAQGLLDAVIAHA- 103

Query: 92  TEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLD 151
                   +D  L  +LR G  +L+     P   + +  V +           F+NAVL 
Sbjct: 104 -AGRPIEEIDGTLLDVLRLGSYQLLRTRVAPHAAVAT-SVDLVRAENGQGRAGFVNAVLR 161

Query: 152 KVSRKEE 158
           +VS + +
Sbjct: 162 RVSERTQ 168


>gi|309804769|ref|ZP_07698833.1| NusB family protein [Lactobacillus iners LactinV 09V1-c]
 gi|308165879|gb|EFO68098.1| NusB family protein [Lactobacillus iners LactinV 09V1-c]
          Length = 284

 Score = 58.2 bits (140), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 26/149 (17%), Positives = 51/149 (34%), Gaps = 29/149 (19%)

Query: 19  ARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMD 78
           AR  A+  L           +I  + ++Y   A      +S    +D      I++G + 
Sbjct: 5   ARSVALDTL----------LKIFKQ-KSYSNIALNNALEKSQLSPIDKALTTQIVYGTVQ 53

Query: 79  RKQHID----LLISSCLTEK--WSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVC 132
            K +++     L+ + L E   W            L     +      +P   I+ E   
Sbjct: 54  YKLYLEYQLKSLVKTKLKEDYLWPL----------LLMSAYQYFFLDKIPTASIVDEANK 103

Query: 133 IAHDFF--YGDEPKFINAVLDKVSRKEEI 159
           +A  +        + +N +L  + R+ EI
Sbjct: 104 LAKSYSPKGSQSYRLVNGILRSLVRRGEI 132


>gi|282891223|ref|ZP_06299726.1| hypothetical protein pah_c048o056 [Parachlamydia acanthamoebae str.
           Hall's coccus]
 gi|281498916|gb|EFB41232.1| hypothetical protein pah_c048o056 [Parachlamydia acanthamoebae str.
           Hall's coccus]
          Length = 417

 Score = 58.2 bits (140), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 30/135 (22%), Positives = 55/135 (40%), Gaps = 13/135 (9%)

Query: 19  ARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMD 78
           AR AA  A+Y     G   +E +  ++            +     +D  + + I +G + 
Sbjct: 6   AREAAFLAVYSFLKEGKFLSESLENWKQ-----------KESPSSLDFSFAQDIAYGSVR 54

Query: 79  RKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFF 138
               +D  I+    E+ S S L +   S+LR  + +     S P+  I  E   +A  + 
Sbjct: 55  MALALD-YIAKSTAERQSLS-LKVKERSLLRTAIYQAAFQRSTPLYAIGQESGNLAKKYC 112

Query: 139 YGDEPKFINAVLDKV 153
           +     F+NA+L K+
Sbjct: 113 HPTFSSFLNALLRKL 127


>gi|257470180|ref|ZP_05634271.1| 16S rRNA m(5)C 967 methyltransferase [Fusobacterium ulcerans ATCC
           49185]
 gi|317064397|ref|ZP_07928882.1| 16S rRNA m(5)C 967 methyltransferase [Fusobacterium ulcerans ATCC
           49185]
 gi|313690073|gb|EFS26908.1| 16S rRNA m(5)C 967 methyltransferase [Fusobacterium ulcerans ATCC
           49185]
          Length = 432

 Score = 58.2 bits (140), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 24/119 (20%), Positives = 47/119 (39%), Gaps = 12/119 (10%)

Query: 43  EYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLT---EKWSFSR 99
           E   Y   A  +   E+     +  +   + +GV+ +K  +D  I+  ++   + W    
Sbjct: 15  ENGKYSNIALNDYFRENTLNRKERGFITELFYGVIRKKIFLDYEINKRVSTIKKDW---- 70

Query: 100 LDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEE 158
               + ++LR  + ++    S    V+  E   +A   F     KF+N VL    R+ E
Sbjct: 71  ----IRNLLRISIYQITFMKSDNKGVVW-EASELAKKKFGVPVGKFVNGVLRGYLREME 124


>gi|228922619|ref|ZP_04085919.1| Ribosomal RNA small subunit methyltransferase B [Bacillus
           thuringiensis serovar huazhongensis BGSC 4BD1]
 gi|228837048|gb|EEM82389.1| Ribosomal RNA small subunit methyltransferase B [Bacillus
           thuringiensis serovar huazhongensis BGSC 4BD1]
          Length = 368

 Score = 58.2 bits (140), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 14/49 (28%), Positives = 21/49 (42%)

Query: 108 LRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRK 156
           LR  + ++I    VP    I E V IA    +      +N VL  + R+
Sbjct: 2   LRLSLYQMIYLDRVPERAAIHEAVEIAKRRGHKGIAGMVNGVLRSIQRE 50


>gi|19703658|ref|NP_603220.1| 16S rRNA m(5)C 967 methyltransferase [Fusobacterium nucleatum
           subsp. nucleatum ATCC 25586]
 gi|19713776|gb|AAL94519.1| 16S rRNA m(5)C 967 methyltransferase [Fusobacterium nucleatum
           subsp. nucleatum ATCC 25586]
          Length = 435

 Score = 58.2 bits (140), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 19/99 (19%), Positives = 42/99 (42%), Gaps = 12/99 (12%)

Query: 65  DLEWFRVIIHGVMDRKQHIDLLISSC---LTEKWSFSRLDMILCSILRAGVLELIECHSV 121
           +  +   I +GV+  K+ +D +I      + ++W        + ++LR  + ++    S 
Sbjct: 37  EKAFITEIFYGVIRNKKFLDYIIEKNTKEIKKEW--------IRNLLRISIYQITFMDSD 88

Query: 122 PVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIK 160
              V+  E   +A   +     KFIN  L    R ++++
Sbjct: 89  DKGVVW-EGTELAKKKYGIPISKFINGTLRNYLRNKDLE 126


>gi|325695223|gb|EGD37124.1| RNA methyltransferase Sun [Streptococcus sanguinis SK150]
          Length = 438

 Score = 58.2 bits (140), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 24/99 (24%), Positives = 45/99 (45%), Gaps = 4/99 (4%)

Query: 58  ESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIE 117
           +S     D      +++G + RK  ++  +S  L E     +LD  L  +L   + +++ 
Sbjct: 36  QSSLNQADKGLVTELVYGTVARKITLEWYLS-HLIEDR--DKLDNWLYILLMLSLYQMLY 92

Query: 118 CHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRK 156
              +P   ++ E V IA     G   KF NA+L ++ R+
Sbjct: 93  LDKIPQHAVVHEAVEIAKIRKRG-SEKFANALLRRIERE 130


>gi|224073118|ref|XP_002303980.1| predicted protein [Populus trichocarpa]
 gi|222841412|gb|EEE78959.1| predicted protein [Populus trichocarpa]
          Length = 218

 Score = 58.2 bits (140), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 33/189 (17%), Positives = 60/189 (31%), Gaps = 52/189 (27%)

Query: 17  GIARLAAVQALYQIDIIGCST-------------------------------------TE 39
             AR  A+  +Y   + G                                        TE
Sbjct: 15  RAARELALLIIYAACLEGSDPIRLFEKRMNARREPGYEFDKASLLEYNHMSFGGPPVTTE 74

Query: 40  IISEYETYRFCADTELDVES---------VYLHVDLEWFRVIIHGVMDRKQHIDLLISSC 90
            + E +  +   + E  +E+         VY  + L + R ++  V+D+     L+I   
Sbjct: 75  TVEEADELQLSDEKESAIEAEVLSAPPKLVYSKLLLRFTRKLLVAVVDKWDSHVLVIDKV 134

Query: 91  LTEKWSFS---RLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFIN 147
               W      R+  +   IL   + E+        +++I+E V +A  F  G  P+ IN
Sbjct: 135 SPPNWKNEPAGRI--LEFCILHMAMSEIT-VLGTRHQIVINEAVDLAKRFCDGAGPRIIN 191

Query: 148 AVLDKVSRK 156
             L    + 
Sbjct: 192 GCLRTFLKD 200


>gi|24378967|ref|NP_720922.1| putative RNA-binding Sun protein; rRNA methylase [Streptococcus
           mutans UA159]
 gi|24376856|gb|AAN58228.1|AE014894_5 putative RNA-binding Sun protein; possible rRNA methylase
           [Streptococcus mutans UA159]
          Length = 437

 Score = 58.2 bits (140), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 27/147 (18%), Positives = 59/147 (40%), Gaps = 15/147 (10%)

Query: 12  LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71
           + +++  AR  A+  L          TEI  +   Y   A      +      D      
Sbjct: 1   MGNKQPTARSGALFVL----------TEIFDK-TAYSNIALRHYLSKHKLSQADRSLLTE 49

Query: 72  IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
           +++G + RK  ++  ++  + ++         +  +L   + +++    +P   I++E V
Sbjct: 50  LVYGTLTRKITLEWYLAHYIEDRNKLE---TWIYYLLMLSLYQILYLDKIPQHAIVNEAV 106

Query: 132 CIAHDFFYGDEPKFINAVLDKVSRKEE 158
            +A     G E K +NAVL +  R++ 
Sbjct: 107 DLAKSRNRGAE-KLVNAVLRQFLRQKR 132


>gi|325697709|gb|EGD39594.1| RNA methyltransferase Sun [Streptococcus sanguinis SK160]
          Length = 438

 Score = 58.2 bits (140), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 24/99 (24%), Positives = 45/99 (45%), Gaps = 4/99 (4%)

Query: 58  ESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIE 117
           +S     D      +++G + RK  ++  +S  L E     +LD  L  +L   + +++ 
Sbjct: 36  QSSLNQADKGLVTELVYGTVARKITLEWYLS-HLIEDR--DKLDNWLYILLMLSLYQMLY 92

Query: 118 CHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRK 156
              +P   ++ E V IA     G   KF NA+L ++ R+
Sbjct: 93  LDKIPQHAVVHEAVEIAKIRKRG-SEKFANALLRRIERE 130


>gi|312195556|ref|YP_004015617.1| Fmu (Sun) domain protein [Frankia sp. EuI1c]
 gi|311226892|gb|ADP79747.1| Fmu (Sun) domain protein [Frankia sp. EuI1c]
          Length = 486

 Score = 58.2 bits (140), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 29/174 (16%), Positives = 59/174 (33%), Gaps = 20/174 (11%)

Query: 1   MTIQDNKKDLK-----LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTEL 55
           MT    +          + R   AR+ A       ++        + E   Y       L
Sbjct: 1   MTSPTGRPRPSAGGGSPAARVDDARMLA------WEV-----LRAVDERGAYANLLLPSL 49

Query: 56  DVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLEL 115
             +      D  +   + +G +  +  +D L+ +  +     + +D  L   LR G  +L
Sbjct: 50  LAQRRLTGRDRGFATELTYGALRAQGLLDGLLDTVTSR--PVATVDPGLRDALRLGTYQL 107

Query: 116 IECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRSGCVSAIT 169
           +    VP    +   V +          +F NAVL +V+ +   +  G ++ + 
Sbjct: 108 L-RTRVPARAAVGTTVDLVRATAGERPVRFANAVLRRVADRV-AETGGDIATML 159


>gi|290581015|ref|YP_003485407.1| putative RNA-binding Sun protein [Streptococcus mutans NN2025]
 gi|254997914|dbj|BAH88515.1| putative RNA-binding Sun protein [Streptococcus mutans NN2025]
          Length = 440

 Score = 58.2 bits (140), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 18/97 (18%), Positives = 43/97 (44%), Gaps = 4/97 (4%)

Query: 62  LHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSV 121
              D      +++G + RK  ++  ++  + ++         +  +L   + +++    +
Sbjct: 43  SQADRSLLTELVYGTLTRKITLEWYLAHYIEDRNKLE---TWIYYLLMLSLYQILYLDKI 99

Query: 122 PVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEE 158
           P   I++E V +A     G E K +NAVL +  R++ 
Sbjct: 100 PQHAIVNEAVDLAKSRNRGAE-KLVNAVLRQFLRQKR 135


>gi|323127837|gb|ADX25134.1| Putative RNA-binding Sun protein [Streptococcus dysgalactiae subsp.
           equisimilis ATCC 12394]
          Length = 440

 Score = 58.2 bits (140), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 24/113 (21%), Positives = 48/113 (42%), Gaps = 4/113 (3%)

Query: 39  EIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFS 98
           E I +   Y   A  +          D      I++G + RK  ++  ++  + ++    
Sbjct: 18  EHIFDQGAYTNIALNQQLSNKALSTKDRALLTEIVYGTVSRKISLEWYLAHYVKDR---D 74

Query: 99  RLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEP-KFINAVL 150
           +LD  +  +L   + +LI    +P   I+++ V IA +        KF+NA+L
Sbjct: 75  KLDKWVYYLLMLSLYQLIYLDKLPAHAIVNDAVGIAKNRGNKKGAEKFVNAIL 127


>gi|221194743|ref|ZP_03567800.1| NusB/NOL1/NOP2/sun family protein [Atopobium rimae ATCC 49626]
 gi|221185647|gb|EEE18037.1| NusB/NOL1/NOP2/sun family protein [Atopobium rimae ATCC 49626]
          Length = 480

 Score = 58.2 bits (140), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 19/96 (19%), Positives = 37/96 (38%), Gaps = 5/96 (5%)

Query: 59  SVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIEC 118
            V    D      ++ G +     +D +++S L ++         L   LR    E++  
Sbjct: 36  DVLGEKDRALATRLLLGSVSAVGELDRVLASYLPKRRHLE---PKLRDALRLATFEILYL 92

Query: 119 HSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVS 154
           H  P  V +S+ V +A            NA+L +++
Sbjct: 93  H-TPKHVAVSQGVEMARR-ASAQATGLANAILRRIA 126


>gi|251783087|ref|YP_002997390.1| 16S rRNA m(5)C 967 methyltransferase [Streptococcus dysgalactiae
           subsp. equisimilis GGS_124]
 gi|242391717|dbj|BAH82176.1| 16S rRNA m(5)C 967 methyltransferase [Streptococcus dysgalactiae
           subsp. equisimilis GGS_124]
          Length = 452

 Score = 58.2 bits (140), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 24/113 (21%), Positives = 48/113 (42%), Gaps = 4/113 (3%)

Query: 39  EIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFS 98
           E I +   Y   A  +          D      I++G + RK  ++  ++  + ++    
Sbjct: 30  EHIFDQGAYTNIALNQQLSNKALSTKDRALLTEIVYGTVSRKISLEWYLAHYVKDR---D 86

Query: 99  RLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEP-KFINAVL 150
           +LD  +  +L   + +LI    +P   I+++ V IA +        KF+NA+L
Sbjct: 87  KLDKWVYYLLMLSLYQLIYLDKLPAHAIVNDAVGIAKNRGNKKGAEKFVNAIL 139


>gi|300854445|ref|YP_003779429.1| putative rRNA subunit cytosine-methyltransferase [Clostridium
           ljungdahlii DSM 13528]
 gi|300434560|gb|ADK14327.1| predicted rRNA subunit cytosine-methyltransferase [Clostridium
           ljungdahlii DSM 13528]
          Length = 443

 Score = 58.2 bits (140), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 24/140 (17%), Positives = 56/140 (40%), Gaps = 14/140 (10%)

Query: 19  ARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMD 78
           AR  AV+ L ++      + ++++ Y              +     D      I++G + 
Sbjct: 4   ARSTAVEILNEVLGSNAYSNKVLNTYLNK-----------NNLNKKDKALVTEIVYGTLK 52

Query: 79  RKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFF 138
               ID ++   +    S  ++++ + +ILR  + +L     +P   +++E V ++    
Sbjct: 53  YMYTIDTILDDFIKS--SLKKMNIDIVNILRISIYQLRYLDKIPEFAVVNEAVELSKKKS 110

Query: 139 YGDEPKFINAVLDKVSRKEE 158
            G     +N VL    R ++
Sbjct: 111 KGLSKL-VNGVLRNYLRNKD 129


>gi|75762655|ref|ZP_00742497.1| 16S rRNA m(5)C 967 methyltransferase [Bacillus thuringiensis
           serovar israelensis ATCC 35646]
 gi|74489854|gb|EAO53228.1| 16S rRNA m(5)C 967 methyltransferase [Bacillus thuringiensis
           serovar israelensis ATCC 35646]
          Length = 368

 Score = 58.2 bits (140), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 14/49 (28%), Positives = 21/49 (42%)

Query: 108 LRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRK 156
           LR  + ++I    VP    I E V IA    +      +N VL  + R+
Sbjct: 2   LRLSLYQMIYLDRVPERAAIHEAVEIAKRRGHKGIAGMVNGVLRSIQRE 50


>gi|302803795|ref|XP_002983650.1| hypothetical protein SELMODRAFT_47118 [Selaginella moellendorffii]
 gi|300148487|gb|EFJ15146.1| hypothetical protein SELMODRAFT_47118 [Selaginella moellendorffii]
          Length = 196

 Score = 58.2 bits (140), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 26/184 (14%), Positives = 51/184 (27%), Gaps = 46/184 (25%)

Query: 17  GIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTE---------------------- 54
             AR  ++  LY   + G    E++ +    R     E                      
Sbjct: 12  RAARELSLCVLYAGLVSGSDPLEVLEDRMQARRERVDEKVLHQYDHDAKSGEPLYVSSES 71

Query: 55  -----LDVESVYLHVDLEWF-----------------RVIIHGVMDRKQHIDLLISSCLT 92
                   +     +D                       II    + ++  + ++   L 
Sbjct: 72  EAKELEFQQEQQSEIDAALLTAHPYVVYNKFVLRYGKEKIIKATSEGREKQEAVVKELLP 131

Query: 93  EKWSFSRLDMI-LCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLD 151
             W       +   +I+   + E+ E       ++I+E V +A  F  G  P+ +N  L 
Sbjct: 132 STWKDEGNGKLLETTIMHMAIAEI-EVLGTSPNIVINEAVELAKRFCDGFAPRVVNGCLG 190

Query: 152 KVSR 155
              R
Sbjct: 191 NYFR 194


>gi|325913038|ref|ZP_08175411.1| ribosomal RNA small subunit methyltransferase B [Lactobacillus
           iners UPII 60-B]
 gi|325477718|gb|EGC80857.1| ribosomal RNA small subunit methyltransferase B [Lactobacillus
           iners UPII 60-B]
          Length = 437

 Score = 58.2 bits (140), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 26/149 (17%), Positives = 51/149 (34%), Gaps = 29/149 (19%)

Query: 19  ARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMD 78
           AR  A+  L           +I  + ++Y   A      +S    +D      I++G + 
Sbjct: 5   ARSVALDTL----------LKIFKQ-KSYSNIALNNALEKSQLSPIDKALTTQIVYGTVQ 53

Query: 79  RKQHID----LLISSCLTEK--WSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVC 132
            K +++     L+ + L E   W            L     +      +P   I+ E   
Sbjct: 54  YKLYLEYQLKSLVQTKLKEDYLWPL----------LLMSAYQYFFLDKIPTASIVDEANK 103

Query: 133 IAHDFF--YGDEPKFINAVLDKVSRKEEI 159
           +A  +        + +N +L  + R+ EI
Sbjct: 104 LAKSYSPKGSQSYRLVNGILRSLVRRGEI 132


>gi|259501638|ref|ZP_05744540.1| RNA methyltransferase Sun [Lactobacillus iners DSM 13335]
 gi|302191155|ref|ZP_07267409.1| SUN protein [Lactobacillus iners AB-1]
 gi|312874589|ref|ZP_07734613.1| ribosomal RNA small subunit methyltransferase B [Lactobacillus
           iners LEAF 2053A-b]
 gi|325911750|ref|ZP_08174157.1| ribosomal RNA small subunit methyltransferase B [Lactobacillus
           iners UPII 143-D]
 gi|259166923|gb|EEW51418.1| RNA methyltransferase Sun [Lactobacillus iners DSM 13335]
 gi|311089819|gb|EFQ48239.1| ribosomal RNA small subunit methyltransferase B [Lactobacillus
           iners LEAF 2053A-b]
 gi|325476516|gb|EGC79675.1| ribosomal RNA small subunit methyltransferase B [Lactobacillus
           iners UPII 143-D]
          Length = 437

 Score = 58.2 bits (140), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 26/149 (17%), Positives = 51/149 (34%), Gaps = 29/149 (19%)

Query: 19  ARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMD 78
           AR  A+  L           +I  + ++Y   A      +S    +D      I++G + 
Sbjct: 5   ARSVALDTL----------LKIFKQ-KSYSNIALNNALEKSQLSPIDKALTTQIVYGTVQ 53

Query: 79  RKQHID----LLISSCLTEK--WSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVC 132
            K +++     L+ + L E   W            L     +      +P   I+ E   
Sbjct: 54  YKLYLEYQLKSLVQTKLKEDYLWPL----------LLMSAYQYFFLDKIPTASIVDEANK 103

Query: 133 IAHDFF--YGDEPKFINAVLDKVSRKEEI 159
           +A  +        + +N +L  + R+ EI
Sbjct: 104 LAKSYSPKGSQSYRLVNGILRSLVRRGEI 132


>gi|329667064|gb|AEB93012.1| RNA methylase [Lactobacillus johnsonii DPC 6026]
          Length = 434

 Score = 58.2 bits (140), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 26/145 (17%), Positives = 50/145 (34%), Gaps = 17/145 (11%)

Query: 17  GIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGV 76
             AR  A++ L           ++ ++        + EL ++      D      I++G 
Sbjct: 2   SNARTVALETL----------IKVFNQKSYSNIALNNEL-IKHDLKPADKALATRIVYGT 50

Query: 77  MDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHD 136
           +  K  ++  +   +  K      D  L  +L     +      VP   I  E   +A  
Sbjct: 51  IQYKIFLEYQLKPLIKTKLR----DSFLKPLLLMSAYQYFFLEKVPANAIFDEANKLAKK 106

Query: 137 FFYGD--EPKFINAVLDKVSRKEEI 159
           +   +    K IN +L  + R+ EI
Sbjct: 107 YSKRNSGSYKLINGILRALERQGEI 131


>gi|42519411|ref|NP_965341.1| SUN protein [Lactobacillus johnsonii NCC 533]
 gi|41583699|gb|AAS09307.1| SUN protein [Lactobacillus johnsonii NCC 533]
          Length = 438

 Score = 58.2 bits (140), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 26/145 (17%), Positives = 50/145 (34%), Gaps = 17/145 (11%)

Query: 17  GIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGV 76
             AR  A++ L           ++ ++        + EL ++      D      I++G 
Sbjct: 2   SNARTVALETL----------IKVFNQKSYSNIALNNEL-IKHDLKPADKALATRIVYGT 50

Query: 77  MDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHD 136
           +  K  ++  +   +  K      D  L  +L     +      VP   I  E   +A  
Sbjct: 51  IQYKIFLEYQLKPLIKTKLR----DSFLKPLLLMSAYQYFFLEKVPANAIFDEANKLAKK 106

Query: 137 FFYGD--EPKFINAVLDKVSRKEEI 159
           +   +    K IN +L  + R+ EI
Sbjct: 107 YSKRNSGSYKLINGILRALERQGEI 131


>gi|312871585|ref|ZP_07731677.1| ribosomal RNA small subunit methyltransferase B [Lactobacillus
           iners LEAF 3008A-a]
 gi|311092810|gb|EFQ51162.1| ribosomal RNA small subunit methyltransferase B [Lactobacillus
           iners LEAF 3008A-a]
          Length = 437

 Score = 58.2 bits (140), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 26/149 (17%), Positives = 51/149 (34%), Gaps = 29/149 (19%)

Query: 19  ARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMD 78
           AR  A+  L           +I  + ++Y   A      +S    +D      I++G + 
Sbjct: 5   ARSVALDTL----------LKIFKQ-KSYSNIALNNALEKSQLSPIDKALTTQIVYGTVQ 53

Query: 79  RKQHID----LLISSCLTEK--WSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVC 132
            K +++     L+ + L E   W            L     +      +P   I+ E   
Sbjct: 54  YKLYLEYQLKSLVKTKLKEDYLWPL----------LLMSAYQYFFLDKIPTASIVDEANK 103

Query: 133 IAHDFF--YGDEPKFINAVLDKVSRKEEI 159
           +A  +        + +N +L  + R+ EI
Sbjct: 104 LAKSYSPKGSQSYRLVNGILRSLVRRGEI 132


>gi|329921088|ref|ZP_08277611.1| ribosomal RNA small subunit methyltransferase B [Lactobacillus
           iners SPIN 1401G]
 gi|328934995|gb|EGG31484.1| ribosomal RNA small subunit methyltransferase B [Lactobacillus
           iners SPIN 1401G]
          Length = 437

 Score = 57.8 bits (139), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 26/149 (17%), Positives = 51/149 (34%), Gaps = 29/149 (19%)

Query: 19  ARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMD 78
           AR  A+  L           +I  + ++Y   A      +S    +D      I++G + 
Sbjct: 5   ARSVALDTL----------LKIFKQ-KSYSNIALNNALEKSQLSPIDKALTTQIVYGTVQ 53

Query: 79  RKQHID----LLISSCLTEK--WSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVC 132
            K +++     L+ + L E   W            L     +      +P   I+ E   
Sbjct: 54  YKLYLEYQLKSLVKTKLKEDYLWPL----------LLMSAYQYFFLDKIPTASIVDEANK 103

Query: 133 IAHDFF--YGDEPKFINAVLDKVSRKEEI 159
           +A  +        + +N +L  + R+ EI
Sbjct: 104 LAKSYSPKGSQSYRLVNGILRSLVRRGEI 132


>gi|206901447|ref|YP_002251151.1| ribosomal RNA small subunit methyltransferase B [Dictyoglomus
           thermophilum H-6-12]
 gi|206740550|gb|ACI19608.1| ribosomal RNA small subunit methyltransferase B [Dictyoglomus
           thermophilum H-6-12]
          Length = 430

 Score = 57.8 bits (139), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 24/139 (17%), Positives = 48/139 (34%), Gaps = 16/139 (11%)

Query: 20  RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79
           RL A + LY ++        ++         +  E             +   +++GV   
Sbjct: 4   RLKAAEILYDLEKREAYLNLLLRSRLPSYNLSLKE-----------KHFITELVYGVTRW 52

Query: 80  KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139
           K  +D + S  +        L +    +LR     +       + + ++E V IA     
Sbjct: 53  KTTLDYIWSRFVKR----DNLSLFGRILLRLVAYHIYFLKDTILPIAVNEIVEIAKR-KV 107

Query: 140 GDEPKFINAVLDKVSRKEE 158
             E K INAV  ++ ++  
Sbjct: 108 PKEAKLINAVSRRMVKERN 126


>gi|312871906|ref|ZP_07731988.1| ribosomal RNA small subunit methyltransferase B [Lactobacillus
           iners LEAF 2062A-h1]
 gi|312873262|ref|ZP_07733318.1| ribosomal RNA small subunit methyltransferase B [Lactobacillus
           iners LEAF 2052A-d]
 gi|311091273|gb|EFQ49661.1| ribosomal RNA small subunit methyltransferase B [Lactobacillus
           iners LEAF 2052A-d]
 gi|311092483|gb|EFQ50845.1| ribosomal RNA small subunit methyltransferase B [Lactobacillus
           iners LEAF 2062A-h1]
          Length = 437

 Score = 57.8 bits (139), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 26/149 (17%), Positives = 51/149 (34%), Gaps = 29/149 (19%)

Query: 19  ARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMD 78
           AR  A+  L           +I  + ++Y   A      +S    +D      I++G + 
Sbjct: 5   ARSVALDTL----------LKIFKQ-KSYSNIALNNALEKSQLSPIDKALTTQIVYGTVQ 53

Query: 79  RKQHID----LLISSCLTEK--WSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVC 132
            K +++     L+ + L E   W            L     +      +P   I+ E   
Sbjct: 54  YKLYLEYQLKSLVKTKLKEDYLWPL----------LLMSAYQYFFLDKIPTASIVDEANK 103

Query: 133 IAHDFF--YGDEPKFINAVLDKVSRKEEI 159
           +A  +        + +N +L  + R+ EI
Sbjct: 104 LAKSYSPKGSQSYRLVNGILRSLVRRGEI 132


>gi|257063705|ref|YP_003143377.1| tRNA/rRNA cytosine-C5-methylase [Slackia heliotrinireducens DSM
           20476]
 gi|256791358|gb|ACV22028.1| tRNA/rRNA cytosine-C5-methylase [Slackia heliotrinireducens DSM
           20476]
          Length = 531

 Score = 57.8 bits (139), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 19/97 (19%), Positives = 36/97 (37%), Gaps = 5/97 (5%)

Query: 59  SVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIEC 118
                 D+ +   +  GV+     +D  I+  L   +S + +   +   LR    EL+  
Sbjct: 126 GPMKPEDVAFATRLARGVVATSGALDDFINRNL---YSPADIQPNVRDALRVSAYELLYL 182

Query: 119 HSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSR 155
                 V + + V +   +         NAVL K++R
Sbjct: 183 KKDDY-VAVDQGVELV-AYVEPKARALANAVLRKMAR 217


>gi|309803103|ref|ZP_07697200.1| ribosomal RNA small subunit methyltransferase B [Lactobacillus
           iners LactinV 11V1-d]
 gi|315653701|ref|ZP_07906621.1| RNA methyltransferase Sun [Lactobacillus iners ATCC 55195]
 gi|308164611|gb|EFO66861.1| ribosomal RNA small subunit methyltransferase B [Lactobacillus
           iners LactinV 11V1-d]
 gi|315489063|gb|EFU78705.1| RNA methyltransferase Sun [Lactobacillus iners ATCC 55195]
          Length = 437

 Score = 57.8 bits (139), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 26/149 (17%), Positives = 51/149 (34%), Gaps = 29/149 (19%)

Query: 19  ARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMD 78
           AR  A+  L           +I  + ++Y   A      +S    +D      I++G + 
Sbjct: 5   ARSVALDTL----------LKIFKQ-KSYSNIALNNALEKSQLSPIDKALTTQIVYGTVQ 53

Query: 79  RKQHID----LLISSCLTEK--WSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVC 132
            K +++     L+ + L E   W            L     +      +P   I+ E   
Sbjct: 54  YKLYLEYQLKSLVQTKLKEDYLWPL----------LLMSAYQYFFLDKIPTASIVDEANK 103

Query: 133 IAHDFF--YGDEPKFINAVLDKVSRKEEI 159
           +A  +        + +N +L  + R+ EI
Sbjct: 104 LAKSYSPKGSQSYRLVNGILRSLVRRGEI 132


>gi|298256363|gb|ADI71472.1| putative tRNA/rRNA cytosine-C5-methylase [Amycolatopsis orientalis
           subsp. vinearia]
          Length = 474

 Score = 57.8 bits (139), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 34/162 (20%), Positives = 54/162 (33%), Gaps = 19/162 (11%)

Query: 3   IQDNKKDLKLSHRRGI-----ARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDV 57
            Q  +   +    R       AR AA   L             +   + Y      +L  
Sbjct: 12  PQRGRPAPRKEGPRRPPSVDPARQAAFDVL-----------AAVRTKDAYANLVLPDLLR 60

Query: 58  ESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIE 117
           E      D      + +G    +  +D +I SC       S+ D  +   LR GV +L+ 
Sbjct: 61  ERRITGRDAALATELAYGASRAQGLLDAVIESCAER--PLSQTDPAVLDALRLGVYQLL- 117

Query: 118 CHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEI 159
              +P    ++  V +           F NAV+ KVS K+E 
Sbjct: 118 RTRIPGHAAVTSTVDLVRAEGGSWATGFANAVMRKVSEKDEA 159


>gi|325963042|ref|YP_004240948.1| ribosomal RNA small subunit methyltransferase RsmB [Arthrobacter
           phenanthrenivorans Sphe3]
 gi|323469129|gb|ADX72814.1| ribosomal RNA small subunit methyltransferase RsmB [Arthrobacter
           phenanthrenivorans Sphe3]
          Length = 533

 Score = 57.8 bits (139), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 32/146 (21%), Positives = 53/146 (36%), Gaps = 17/146 (11%)

Query: 12  LSHR-RGI--ARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEW 68
            S R R    ARL A + L        +  +  +            LD        D  +
Sbjct: 63  PSQRTRRADPARLVAFEVL-----RAVAAEDAYANLVLPARIRHHGLD------KRDAGF 111

Query: 69  FRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIIS 128
              + +G +  +   D +++ C+       +LD  +   LR GV +L+    VP    + 
Sbjct: 112 ATELTYGALRGQGTYDAILARCVDR--PLDQLDPAVLDALRIGVHQLLAMR-VPAHAALD 168

Query: 129 EYVCIAHDFFYGDEPKFINAVLDKVS 154
           + V +A           INAVL KV+
Sbjct: 169 QTVGLARAVIGAGPSALINAVLRKVA 194


>gi|161507728|ref|YP_001577689.1| rRNA methylase [Lactobacillus helveticus DPC 4571]
 gi|260101420|ref|ZP_05751657.1| RNA methyltransferase Sun [Lactobacillus helveticus DSM 20075]
 gi|160348717|gb|ABX27391.1| rRNA methylase [Lactobacillus helveticus DPC 4571]
 gi|260084760|gb|EEW68880.1| RNA methyltransferase Sun [Lactobacillus helveticus DSM 20075]
          Length = 454

 Score = 57.8 bits (139), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 16/95 (16%), Positives = 37/95 (38%), Gaps = 6/95 (6%)

Query: 64  VDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPV 123
            D      I++G +  +  ++  ++  L  K +    +  L  +L   + ++I    VP 
Sbjct: 53  ADQNLATRIVYGTIQYRLFLEYQLTGLLKTKIT----EKYLKPLLLMSLYQIIFLDKVPN 108

Query: 124 EVIISEYVCIAHDFFYGDEPKF--INAVLDKVSRK 156
             ++ E   +A  F       +  +N +L    R+
Sbjct: 109 RAVLDEANKLAKQFGKHHSSGYRVVNGILRAFIRR 143


>gi|229815471|ref|ZP_04445803.1| hypothetical protein COLINT_02519 [Collinsella intestinalis DSM
           13280]
 gi|229809004|gb|EEP44774.1| hypothetical protein COLINT_02519 [Collinsella intestinalis DSM
           13280]
          Length = 478

 Score = 57.8 bits (139), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 34/147 (23%), Positives = 59/147 (40%), Gaps = 20/147 (13%)

Query: 10  LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDV--ESVYLHVDLE 67
           L  + +    RL A++ L             I+  E+ R+  +   D    +     D  
Sbjct: 8   LSKTAKLSPGRLVALRIL-------------IAARESGRYARELAADACASASLDSRDAA 54

Query: 68  WFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVII 127
           + R +  GV      +D  ++S L +  S   L   +   LR G  EL+   + P +V +
Sbjct: 55  FARRLALGVTGCSGCLDDALNSVLDDPRS---LTADVRDALRIGAYELLYLGTSP-QVAV 110

Query: 128 SEYVCIAHDFFYGDEPKFINAVLDKVS 154
           S+ V +A    +G      NAVL +V+
Sbjct: 111 SQAVELARMCAHG-AAGLANAVLRRVA 136


>gi|325685886|gb|EGD27952.1| RNA methyltransferase Sun [Lactobacillus delbrueckii subsp. lactis
           DSM 20072]
          Length = 438

 Score = 57.4 bits (138), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 18/147 (12%), Positives = 53/147 (36%), Gaps = 19/147 (12%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           +  AR  A+  L           ++I++  +Y   +       +     +      +++G
Sbjct: 2   KTNARTVALDTL----------MKVINQ-GSYSNISLNHALKAAKLPGEESRLATNLVYG 50

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRL-DMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134
            +  + +++  +   +       RL +  +  +L     ++     VP   ++ E   +A
Sbjct: 51  TIQYQLYLEYQLKDLVKA-----RLREPYIKPLLLMSAYQIFFLDKVPNRAVLDEANKLA 105

Query: 135 HDFFYGDEPKF--INAVLDKVSRKEEI 159
             +       +  +N +L  + R+ E+
Sbjct: 106 KAYGRPKSSGYRLVNGILHSLLRRGEV 132


>gi|309807733|ref|ZP_07701667.1| rRNA methyltransferase RsmB family protein [Lactobacillus iners
           LactinV 01V1-a]
 gi|308168993|gb|EFO71077.1| rRNA methyltransferase RsmB family protein [Lactobacillus iners
           LactinV 01V1-a]
          Length = 160

 Score = 57.4 bits (138), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 19/111 (17%), Positives = 39/111 (35%), Gaps = 18/111 (16%)

Query: 57  VESVYLHVDLEWFRVIIHGVMDRKQHID----LLISSCLTEK--WSFSRLDMILCSILRA 110
            +S    +D      I++G +  K +++     L+ + L E   W            L  
Sbjct: 2   EKSQLSPIDKALTTQIVYGTVQYKLYLEYQLKSLVKTKLKEDYLWPL----------LLM 51

Query: 111 GVLELIECHSVPVEVIISEYVCIAHDFF--YGDEPKFINAVLDKVSRKEEI 159
              +      +P   I+ E   +A  +        + +N +L  + R+ EI
Sbjct: 52  SAYQYFFLDKIPTASIVDEANKLAKSYSPKGSQSYRLVNGILRSLVRRGEI 102


>gi|239618307|ref|YP_002941629.1| NusB/RsmB/TIM44 [Kosmotoga olearia TBF 19.5.1]
 gi|239507138|gb|ACR80625.1| NusB/RsmB/TIM44 [Kosmotoga olearia TBF 19.5.1]
          Length = 336

 Score = 57.4 bits (138), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 26/126 (20%), Positives = 55/126 (43%), Gaps = 11/126 (8%)

Query: 35  CSTTEIISEYETYRFCADTELDVE-SVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTE 93
               E ++ ++   +    ++++  S    +   ++  ++   + ++  ID +++  L +
Sbjct: 6   QKALETLAFFDQNGYIPFRKVEIAISTLSSIGRRFYMNLVMETLRKRIQIDYILNQFLKK 65

Query: 94  KWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCI--AHDFFYGDEPKFINAVLD 151
                +L   + + LR GV +L    SVP    I   V +  A  F      K +NAVL 
Sbjct: 66  ---PEKLPAPVMNALRLGVTQLFYMDSVPEFAAIHSSVELLKAKSF-----KKLVNAVLR 117

Query: 152 KVSRKE 157
           K+S+ E
Sbjct: 118 KISKLE 123


>gi|297559831|ref|YP_003678805.1| Fmu (Sun) domain protein [Nocardiopsis dassonvillei subsp.
           dassonvillei DSM 43111]
 gi|296844279|gb|ADH66299.1| Fmu (Sun) domain protein [Nocardiopsis dassonvillei subsp.
           dassonvillei DSM 43111]
          Length = 489

 Score = 57.4 bits (138), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 30/145 (20%), Positives = 54/145 (37%), Gaps = 14/145 (9%)

Query: 13  SHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVI 72
           S  R  AR  A   L             + + + Y       L  E      D      +
Sbjct: 30  SPPRDPARRVAYDVL-----------RAVGQRDAYANLLLPALLSERGISGRDAALATEL 78

Query: 73  IHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVC 132
            +G +  +   D ++ +C+    + + +D     +LR G  +L+    +P    +S  V 
Sbjct: 79  TYGTLRLQGTYDAILEACVDR--TLASVDTEALPLLRLGAHQLL-STKIPPHAAVSATVD 135

Query: 133 IAHDFFYGDEPKFINAVLDKVSRKE 157
           +A         +F+NAVL KVS ++
Sbjct: 136 LARRVVGHHRGRFVNAVLRKVSARD 160


>gi|300361951|ref|ZP_07058128.1| ribosomal RNA small subunit methyltransferase B [Lactobacillus
           gasseri JV-V03]
 gi|300354570|gb|EFJ70441.1| ribosomal RNA small subunit methyltransferase B [Lactobacillus
           gasseri JV-V03]
          Length = 438

 Score = 57.4 bits (138), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 26/148 (17%), Positives = 51/148 (34%), Gaps = 17/148 (11%)

Query: 17  GIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGV 76
             AR  A++ L           ++ ++        + EL V+      D      I++G 
Sbjct: 2   SNARTVALETL----------IKVFNQKSYSNIALNNEL-VKHELKPADKALATRIVYGT 50

Query: 77  MDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHD 136
           +  K  ++  +   +  K      D  L  +L     +      VP   I  E   +A  
Sbjct: 51  IQYKIFLEYQLKPLIKTKLR----DKFLMPLLLMSAYQYFFLEKVPANAIFDEANKLAKK 106

Query: 137 FFYGD--EPKFINAVLDKVSRKEEIKRS 162
           F   +    K +N +L  + R+ ++  S
Sbjct: 107 FSKKNSGSYKLVNGILRALERQGKVLPS 134


>gi|206891137|ref|YP_002248173.1| Sun protein [Thermodesulfovibrio yellowstonii DSM 11347]
 gi|206743075|gb|ACI22132.1| Sun protein [Thermodesulfovibrio yellowstonii DSM 11347]
          Length = 441

 Score = 57.4 bits (138), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 24/103 (23%), Positives = 45/103 (43%), Gaps = 6/103 (5%)

Query: 59  SVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIEC 118
           S++   D  +   +I+GV+    +ID L+      +    +L M   + LR  + +L+  
Sbjct: 34  SMFDKADRAFLLEVIYGVLRNLYYIDWLLEDFYKSR---EKLSMYTINNLRCAIYQLVFM 90

Query: 119 HSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKR 161
           H +P   + +E V +   F     P  +NA+L    RK +   
Sbjct: 91  H-IPAYAVANETVNVEKSFNGK--PNVVNAILRNFLRKYQADE 130


>gi|134098684|ref|YP_001104345.1| ribosomal RNA small subunit methyltransferase [Saccharopolyspora
           erythraea NRRL 2338]
 gi|133911307|emb|CAM01420.1| ribosomal RNA small subunit methyltransferase [Saccharopolyspora
           erythraea NRRL 2338]
          Length = 430

 Score = 57.4 bits (138), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 24/119 (20%), Positives = 44/119 (36%), Gaps = 3/119 (2%)

Query: 42  SEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLD 101
            + + Y   A   L  +      D      + +G    +  +D +I  C         +D
Sbjct: 2   RDRDAYANLALPALLKQRRISGRDAALATELTYGACRAQGLLDAVIGECSAR--PLDGID 59

Query: 102 MILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIK 160
             L   LR G  +L+    +P    ++  V I        +  F NAVL ++S ++E +
Sbjct: 60  PELLDALRLGAYQLL-RTRIPAHAAVASTVDIVRAESGSRQAGFANAVLRRISERDEQE 117


>gi|258654277|ref|YP_003203433.1| Fmu (Sun) domain-containing protein [Nakamurella multipartita DSM
           44233]
 gi|258557502|gb|ACV80444.1| Fmu (Sun) domain protein [Nakamurella multipartita DSM 44233]
          Length = 494

 Score = 57.4 bits (138), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 26/136 (19%), Positives = 48/136 (35%), Gaps = 14/136 (10%)

Query: 19  ARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMD 78
           AR AA+  L             +     Y   A   +  +      D      + +G   
Sbjct: 41  ARQAALDLL-----------AAVRSRGAYANLALPPILRDRRIGGRDAALATELAYGSCR 89

Query: 79  RKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFF 138
               +D +I++C      F+ LD  +   LR G  +L+    +P    +S  V +     
Sbjct: 90  ALGQLDAVITACGDR--PFAELDGEVIDALRLGAYQLLHTR-IPPHAAVSSTVELVRAGD 146

Query: 139 YGDEPKFINAVLDKVS 154
                 ++NAVL +++
Sbjct: 147 RAGAAGYVNAVLRRIA 162


>gi|312869942|ref|ZP_07730081.1| ribosomal RNA small subunit methyltransferase B [Lactobacillus oris
           PB013-T2-3]
 gi|311094527|gb|EFQ52832.1| ribosomal RNA small subunit methyltransferase B [Lactobacillus oris
           PB013-T2-3]
          Length = 449

 Score = 57.4 bits (138), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 27/139 (19%), Positives = 49/139 (35%), Gaps = 15/139 (10%)

Query: 18  IARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVM 77
            AR  A+ AL           + I     Y      +L  +      D      I++G +
Sbjct: 8   TAREVALTAL-----------DRIRRQGAYSNLQLNQLLSKHHLNDSDRRLATRIVYGTL 56

Query: 78  DRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDF 137
             +  ++  +   +  K    RLD  + ++L   + +      VP   +  E + IA  +
Sbjct: 57  QHQLTLEYWLQPFVKGK----RLDSWVETLLLTALYQYHYLERVPDWAVTDETIEIAKHW 112

Query: 138 FYGDEPKFINAVLDKVSRK 156
                 KF+  VL  V R+
Sbjct: 113 GNPGIRKFVTGVLHAVLRR 131


>gi|315038633|ref|YP_004032201.1| rRNA methylase [Lactobacillus amylovorus GRL 1112]
 gi|312276766|gb|ADQ59406.1| rRNA methylase [Lactobacillus amylovorus GRL 1112]
 gi|327183838|gb|AEA32285.1| 16S rRNA methyltransferase B [Lactobacillus amylovorus GRL 1118]
          Length = 442

 Score = 57.4 bits (138), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 14/103 (13%), Positives = 35/103 (33%), Gaps = 12/103 (11%)

Query: 59  SVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILC---SILRAGVLEL 115
           S     D      I++G +  +  ++  +           R+ +       +L   + ++
Sbjct: 36  SDLSQADQNLATKIVYGTIQYRLFLEYQLKG-------LVRIKLTEKYLKPLLLMSIYQI 88

Query: 116 IECHSVPVEVIISEYVCIAHDFFYGDEPKF--INAVLDKVSRK 156
           +    VP   ++ E   +A  F       +  +N +L    R+
Sbjct: 89  VFLDKVPNRAVLDEANKLAKQFGKHHSSGYRVVNGILRSFIRR 131


>gi|257464362|ref|ZP_05628739.1| 16S rRNA m(5)C 967 methyltransferase [Fusobacterium sp. D12]
 gi|317061867|ref|ZP_07926352.1| 16S rRNA m(5)C 967 methyltransferase [Fusobacterium sp. D12]
 gi|313687543|gb|EFS24378.1| 16S rRNA m(5)C 967 methyltransferase [Fusobacterium sp. D12]
          Length = 432

 Score = 57.4 bits (138), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 24/118 (20%), Positives = 46/118 (38%), Gaps = 12/118 (10%)

Query: 53  TELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTE---KWSFSRLDMILCSILR 109
            EL  +  +   +  +   + +GV+  K ++D +IS  + E    W        L  + R
Sbjct: 25  NELFHKKSFQKGEKNFITEVFYGVIRNKIYLDHMISQKVKEIKKDW--------LQQLFR 76

Query: 110 AGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRSGCVSA 167
               ++    S   + +I E V +A   +     +F+NAVL    R    +    + A
Sbjct: 77  LSFYQIRFMES-DDKGVIWEGVELAKKKYGISVSRFVNAVLRNFQRSFSEEEEKLIKA 133


>gi|302335853|ref|YP_003801060.1| NusB/RsmB/TIM44 [Olsenella uli DSM 7084]
 gi|301319693|gb|ADK68180.1| NusB/RsmB/TIM44 [Olsenella uli DSM 7084]
          Length = 484

 Score = 57.4 bits (138), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 24/115 (20%), Positives = 40/115 (34%), Gaps = 15/115 (13%)

Query: 19  ARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMD 78
           AR  AV+ L    +    + E++              D  S     D      ++ GV+ 
Sbjct: 17  ARRVAVRLLRDQRVRDGRSRELLR-----------SSDALSALDERDRALATRLVLGVVA 65

Query: 79  RKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCI 133
            +  +D  I S L      S L+  +   LR    EL+     P    +S+ V +
Sbjct: 66  SRGALDAAIDSHLRPH---SHLEPKVRDALRLASFELMY-LDTPPSAAVSQGVEL 116


>gi|295397805|ref|ZP_06807870.1| ribosomal RNA small subunit methyltransferase B [Aerococcus
           viridans ATCC 11563]
 gi|294973940|gb|EFG49702.1| ribosomal RNA small subunit methyltransferase B [Aerococcus
           viridans ATCC 11563]
          Length = 482

 Score = 57.0 bits (137), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 29/152 (19%), Positives = 53/152 (34%), Gaps = 19/152 (12%)

Query: 7   KKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDL 66
           +  LKLS R         QA+        S  +II          +  L  E+V    D 
Sbjct: 22  QTPLKLSAR--------FQAM-------ESVNQIIRHNHFINQEVNRVLTEEAV-AEADR 65

Query: 67  EWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVI 126
             +  +++G +     +D  +   + +          + S+L     ++    ++P   +
Sbjct: 66  NLYTNLVYGSVQNYYTLDAFVRDFVAKPNKVK---SWVWSLLIVSAYQMYYLDNIPNYAV 122

Query: 127 ISEYVCIAHDFFYGDEPKFINAVLDKVSRKEE 158
           + E V I          KF N VL   +R+ E
Sbjct: 123 VDEAVRIVRKRGNQTLAKFANGVLRNFTRRYE 154


>gi|237745177|ref|ZP_04575658.1| 16S rRNA m(5)C 967 methyltransferase [Fusobacterium sp. 7_1]
 gi|229432406|gb|EEO42618.1| 16S rRNA m(5)C 967 methyltransferase [Fusobacterium sp. 7_1]
          Length = 435

 Score = 57.0 bits (137), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 17/99 (17%), Positives = 40/99 (40%), Gaps = 12/99 (12%)

Query: 65  DLEWFRVIIHGVMDRKQHIDLLISSC---LTEKWSFSRLDMILCSILRAGVLELIECHSV 121
           +  +   I +GV+  K+ +D +I      + ++W        + ++LR  + ++      
Sbjct: 37  EKAFITEIFYGVIRNKKFLDYIIERYTKEIKKEW--------IRNLLRISIYQITFM-DS 87

Query: 122 PVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIK 160
             + I+ E   +    +     KFIN  L    R ++ +
Sbjct: 88  DNKGIVWEATELTKKKYGMTISKFINGTLRNYLRNKDTE 126


>gi|256026704|ref|ZP_05440538.1| 16S rRNA m(5)C 967 methyltransferase [Fusobacterium sp. D11]
 gi|289764700|ref|ZP_06524078.1| 16S rRNA m(5)C 967 methyltransferase [Fusobacterium sp. D11]
 gi|289716255|gb|EFD80267.1| 16S rRNA m(5)C 967 methyltransferase [Fusobacterium sp. D11]
          Length = 435

 Score = 57.0 bits (137), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 17/99 (17%), Positives = 40/99 (40%), Gaps = 12/99 (12%)

Query: 65  DLEWFRVIIHGVMDRKQHIDLLISSC---LTEKWSFSRLDMILCSILRAGVLELIECHSV 121
           +  +   I +GV+  K+ +D +I      + ++W        + ++LR  + ++      
Sbjct: 37  EKAFITEIFYGVIRNKKFLDYIIERYTKEIKKEW--------IRNLLRISIYQITFM-DS 87

Query: 122 PVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIK 160
             + I+ E   +    +     KFIN  L    R ++ +
Sbjct: 88  DNKGIVWEATELTKKKYGMTISKFINGTLRNYLRNKDTE 126


>gi|299783408|gb|ADJ41406.1| Ribosomal RNA small subunit methyltransferase B [Lactobacillus
           fermentum CECT 5716]
          Length = 448

 Score = 57.0 bits (137), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 19/133 (14%), Positives = 44/133 (33%), Gaps = 9/133 (6%)

Query: 29  QIDIIGC-----STTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHI 83
           Q  + G      +T + +     Y      +          D      +++G +  ++ +
Sbjct: 5   QAQLTGARAIALATLDKVRTSGAYSNLQLNQALESGQLSGADRRLVTALVYGTLQHQRTL 64

Query: 84  DLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEP 143
           D  +S  +  K    ++   + ++L   + +      VP      E + IA         
Sbjct: 65  DYWLSPFIAGK----KVRPWVKTLLLMTLFQYQYLDRVPNFAATDEAIEIAKRRGNPGVR 120

Query: 144 KFINAVLDKVSRK 156
           +F+  VL  + R 
Sbjct: 121 RFVTGVLHAILRN 133


>gi|227515682|ref|ZP_03945731.1| rRNA SAM-dependent methyltransferase RmsB [Lactobacillus fermentum
           ATCC 14931]
 gi|227085930|gb|EEI21242.1| rRNA SAM-dependent methyltransferase RmsB [Lactobacillus fermentum
           ATCC 14931]
          Length = 448

 Score = 57.0 bits (137), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 19/133 (14%), Positives = 44/133 (33%), Gaps = 9/133 (6%)

Query: 29  QIDIIGC-----STTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHI 83
           Q  + G      +T + +     Y      +          D      +++G +  ++ +
Sbjct: 5   QAQLTGARAIALATLDKVRTSGAYSNLQLNQALESGQLSGADRRLVTALVYGTLQHQRTL 64

Query: 84  DLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEP 143
           D  +S  +  K    ++   + ++L   + +      VP      E + IA         
Sbjct: 65  DYWLSPFIAGK----KVRPWVKTLLLMTLFQYQYLDRVPNFAATDEAIEIAKRRGNPGVR 120

Query: 144 KFINAVLDKVSRK 156
           +F+  VL  + R 
Sbjct: 121 RFVTGVLHAILRN 133


>gi|227878882|ref|ZP_03996787.1| rRNA SAM-dependent methyltransferase RmsB [Lactobacillus crispatus
           JV-V01]
 gi|227861516|gb|EEJ69130.1| rRNA SAM-dependent methyltransferase RmsB [Lactobacillus crispatus
           JV-V01]
          Length = 427

 Score = 57.0 bits (137), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 19/99 (19%), Positives = 39/99 (39%), Gaps = 14/99 (14%)

Query: 64  VDLEWFRVIIHGVMDRKQ----HIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECH 119
            D      I++G +  +      +  L+ + LTEK+        +  +L   + +LI   
Sbjct: 27  ADQNLATNIVYGTIQYRLFLEYQLKGLVRTKLTEKY--------IKPLLLMSLYQLIFLD 78

Query: 120 SVPVEVIISEYVCIAHDFFYGDEPKF--INAVLDKVSRK 156
            VP   ++ E   +A  +       F  +N +L   +R+
Sbjct: 79  KVPDRAVLDEANKLAKQYGKRHSAGFRLVNGILRSFTRR 117


>gi|227542164|ref|ZP_03972213.1| 16S rRNA M(5)C 967 methyltransferase [Corynebacterium
           glucuronolyticum ATCC 51866]
 gi|227181993|gb|EEI62965.1| 16S rRNA M(5)C 967 methyltransferase [Corynebacterium
           glucuronolyticum ATCC 51866]
          Length = 620

 Score = 57.0 bits (137), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 27/118 (22%), Positives = 46/118 (38%), Gaps = 13/118 (11%)

Query: 58  ESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIE 117
           E+     D  +   I +G M     +D +I SC +     S LD I+ + LR G+ +L+ 
Sbjct: 168 EAGLSGRDAAFATEIGYGTMRMVGVLDEIIGSCSSR--PMSELDPIVLNALRMGIYQLLY 225

Query: 118 CHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRK------EEIKRSGCVSAIT 169
                        V  +          F+NA+L  V +K      EE+   G ++ + 
Sbjct: 226 TRVEDHA-----AVDTSVRLVPQRVKGFVNAILRAVQKKPLEQWIEELAPEGKLAQLA 278


>gi|227488841|ref|ZP_03919157.1| possible rRNA SAM-dependent methyltransferase RmsB [Corynebacterium
           glucuronolyticum ATCC 51867]
 gi|227091263|gb|EEI26575.1| possible rRNA SAM-dependent methyltransferase RmsB [Corynebacterium
           glucuronolyticum ATCC 51867]
          Length = 470

 Score = 57.0 bits (137), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 27/118 (22%), Positives = 46/118 (38%), Gaps = 13/118 (11%)

Query: 58  ESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIE 117
           E+     D  +   I +G M     +D +I SC +     S LD I+ + LR G+ +L+ 
Sbjct: 18  EAGLSGRDAAFATEIGYGTMRMVGVLDEIIGSCSSR--PMSELDPIVLNALRMGIYQLLY 75

Query: 118 CHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRK------EEIKRSGCVSAIT 169
                        V  +          F+NA+L  V +K      EE+   G ++ + 
Sbjct: 76  TRVEDHA-----AVDTSVRLVPQRVKGFVNAILRAVQKKPLEQWIEELAPEGKLAQLA 128


>gi|332702662|ref|ZP_08422750.1| Fmu (Sun) domain protein [Desulfovibrio africanus str. Walvis Bay]
 gi|332552811|gb|EGJ49855.1| Fmu (Sun) domain protein [Desulfovibrio africanus str. Walvis Bay]
          Length = 433

 Score = 57.0 bits (137), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 29/137 (21%), Positives = 44/137 (32%), Gaps = 14/137 (10%)

Query: 19  ARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMD 78
           AR AA++A+ +           +    T R  A             D+     + +G + 
Sbjct: 9   ARRAALEAVSKSLNTSTDVQAALDTQITARRLA-----------PRDIGLATELTYGYLR 57

Query: 79  RKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFF 138
            K  +D L+   L       +L   +  IL     EL     VP    ++  V      F
Sbjct: 58  LKSRLDALLDHFLRA---PGKLPARVRLILGLAAYELSYLDRVPAYASVNWAVDAVKADF 114

Query: 139 YGDEPKFINAVLDKVSR 155
                K  N VL  V R
Sbjct: 115 GQGLSKMANGVLRSVER 131


>gi|293380312|ref|ZP_06626386.1| ribosomal RNA small subunit methyltransferase B [Lactobacillus
           crispatus 214-1]
 gi|295693192|ref|YP_003601802.1| sun protein [Lactobacillus crispatus ST1]
 gi|290923127|gb|EFE00056.1| ribosomal RNA small subunit methyltransferase B [Lactobacillus
           crispatus 214-1]
 gi|295031298|emb|CBL50777.1| SUN protein [Lactobacillus crispatus ST1]
          Length = 441

 Score = 57.0 bits (137), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 19/99 (19%), Positives = 39/99 (39%), Gaps = 14/99 (14%)

Query: 64  VDLEWFRVIIHGVMDRKQ----HIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECH 119
            D      I++G +  +      +  L+ + LTEK+        +  +L   + +LI   
Sbjct: 41  ADQNLATNIVYGTIQYRLFLEYQLKGLVRTKLTEKY--------IKPLLLMSLYQLIFLD 92

Query: 120 SVPVEVIISEYVCIAHDFFYGDEPKF--INAVLDKVSRK 156
            VP   ++ E   +A  +       F  +N +L   +R+
Sbjct: 93  KVPDRAVLDEANKLAKQYGKRHSAGFRLVNGILRSFTRR 131


>gi|256849782|ref|ZP_05555213.1| rRNA methylase [Lactobacillus crispatus MV-1A-US]
 gi|262046519|ref|ZP_06019480.1| ribosomal RNA small subunit methyltransferase B [Lactobacillus
           crispatus MV-3A-US]
 gi|312984157|ref|ZP_07791503.1| ribosomal RNA small subunit methyltransferase B [Lactobacillus
           crispatus CTV-05]
 gi|256713271|gb|EEU28261.1| rRNA methylase [Lactobacillus crispatus MV-1A-US]
 gi|260572968|gb|EEX29527.1| ribosomal RNA small subunit methyltransferase B [Lactobacillus
           crispatus MV-3A-US]
 gi|310894376|gb|EFQ43452.1| ribosomal RNA small subunit methyltransferase B [Lactobacillus
           crispatus CTV-05]
          Length = 453

 Score = 56.6 bits (136), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 19/99 (19%), Positives = 39/99 (39%), Gaps = 14/99 (14%)

Query: 64  VDLEWFRVIIHGVMDRKQ----HIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECH 119
            D      I++G +  +      +  L+ + LTEK+        +  +L   + +LI   
Sbjct: 53  ADQNLATNIVYGTIQYRLFLEYQLKGLVRTKLTEKY--------IKPLLLMSLYQLIFLD 104

Query: 120 SVPVEVIISEYVCIAHDFFYGDEPKF--INAVLDKVSRK 156
            VP   ++ E   +A  +       F  +N +L   +R+
Sbjct: 105 KVPDRAVLDEANKLAKQYGKRHSAGFRLVNGILRSFTRR 143


>gi|116514363|ref|YP_813269.1| tRNA and rRNA cytosine-C5-methylase [Lactobacillus delbrueckii
           subsp. bulgaricus ATCC BAA-365]
 gi|116093678|gb|ABJ58831.1| tRNA and rRNA cytosine-C5-methylase [Lactobacillus delbrueckii
           subsp. bulgaricus ATCC BAA-365]
          Length = 438

 Score = 56.6 bits (136), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 12/104 (11%), Positives = 39/104 (37%), Gaps = 8/104 (7%)

Query: 59  SVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRL-DMILCSILRAGVLELIE 117
           +     +      +++G +  + +++  +   +       RL +  +  +L     ++  
Sbjct: 34  AKLPDEESRLATNLVYGTIQYQLYLEYQLKDLVKA-----RLREPYIKPLLLMSAYQIFF 88

Query: 118 CHSVPVEVIISEYVCIAHDFFYGDEPKF--INAVLDKVSRKEEI 159
              VP   ++ E   +A  +       +  +N +L  + R+ E+
Sbjct: 89  LDKVPNRAVLDEANKLAKVYGRPKSSGYRLVNGILRSLLRRGEV 132


>gi|300811705|ref|ZP_07092180.1| ribosomal RNA small subunit methyltransferase B [Lactobacillus
           delbrueckii subsp. bulgaricus PB2003/044-T3-4]
 gi|300497332|gb|EFK32379.1| ribosomal RNA small subunit methyltransferase B [Lactobacillus
           delbrueckii subsp. bulgaricus PB2003/044-T3-4]
          Length = 438

 Score = 56.6 bits (136), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 18/147 (12%), Positives = 53/147 (36%), Gaps = 19/147 (12%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           +  AR  A+  L           ++I++  +Y   +       +     +      +++G
Sbjct: 2   KTNARTVALDTL----------MKVINQ-GSYSNISLNHALKAAKLPGEESRLATNLVYG 50

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRL-DMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134
            +  + +++  +   +       RL +  +  +L     ++     VP   ++ E   +A
Sbjct: 51  TIQYQLYLEYQLKDLVKA-----RLREPYIKPLLLMSAYQIFFLDKVPNRAVLDEANKLA 105

Query: 135 HDFFYGDEPKF--INAVLDKVSRKEEI 159
             +       +  +N +L  + R+ E+
Sbjct: 106 KGYGRPKSSGYRLVNGILRSLLRRREV 132


>gi|269127209|ref|YP_003300579.1| Fmu (Sun) domain-containing protein [Thermomonospora curvata DSM
           43183]
 gi|268312167|gb|ACY98541.1| Fmu (Sun) domain protein [Thermomonospora curvata DSM 43183]
          Length = 471

 Score = 56.6 bits (136), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 31/154 (20%), Positives = 55/154 (35%), Gaps = 14/154 (9%)

Query: 7   KKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDV---ESVYLH 63
           +   +    R   R          D++  +  E+I   +T    A+  L V   E     
Sbjct: 10  RAGRRPGAPRRTGRPQ--------DLVRRTAFEVIRAVQTRDAYANLLLPVRLRERGLTG 61

Query: 64  VDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPV 123
            D      + +G +  +   D ++  C        R+D  L  +LR G  +L+    +P 
Sbjct: 62  RDAALATELTYGTLRGRGTYDAVLEVCSDR--PLRRIDEPLLDVLRLGAHQLLGTR-IPP 118

Query: 124 EVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKE 157
              +   V +A          F NAVL KV+ ++
Sbjct: 119 HAAVGTAVELARSVVGAGRAGFANAVLRKVATRD 152


>gi|313124092|ref|YP_004034351.1| tRNA and rRNA cytosine-c5-methylase [Lactobacillus delbrueckii
           subsp. bulgaricus ND02]
 gi|312280655|gb|ADQ61374.1| tRNA and rRNA cytosine-C5-methylase [Lactobacillus delbrueckii
           subsp. bulgaricus ND02]
          Length = 438

 Score = 56.6 bits (136), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 12/104 (11%), Positives = 39/104 (37%), Gaps = 8/104 (7%)

Query: 59  SVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRL-DMILCSILRAGVLELIE 117
           +     +      +++G +  + +++  +   +       RL +  +  +L     ++  
Sbjct: 34  AKLPGEESRLATNLVYGTIQYQLYLEYQLKDLVKA-----RLREPYIKPLLLMSAYQIFF 88

Query: 118 CHSVPVEVIISEYVCIAHDFFYGDEPKF--INAVLDKVSRKEEI 159
              VP   ++ E   +A  +       +  +N +L  + R+ E+
Sbjct: 89  LDKVPNRAVLDEANKLAKAYGRPKSSGYRLVNGILHSLLRRGEV 132


>gi|104774278|ref|YP_619258.1| putative RNA methylase [Lactobacillus delbrueckii subsp. bulgaricus
           ATCC 11842]
 gi|103423359|emb|CAI98212.1| Putative RNA methylase [Lactobacillus delbrueckii subsp. bulgaricus
           ATCC 11842]
          Length = 438

 Score = 56.6 bits (136), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 18/147 (12%), Positives = 53/147 (36%), Gaps = 19/147 (12%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           +  AR  A+  L           ++I++  +Y   +       +     +      +++G
Sbjct: 2   KTNARTVALDTL----------MKVINQ-GSYSNISLNHALKAAKLPGEESRLATNLVYG 50

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRL-DMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134
            +  + +++  +   +       RL +  +  +L     ++     VP   ++ E   +A
Sbjct: 51  TIQYQLYLEYQLKDLVKA-----RLREPYIKPLLLMSAYQIFFLDKVPNRAVLDEANKLA 105

Query: 135 HDFFYGDEPKF--INAVLDKVSRKEEI 159
             +       +  +N +L  + R+ E+
Sbjct: 106 KVYGRPKSSGYRLVNGILHSLLRRGEV 132


>gi|325126062|gb|ADY85392.1| rRNA methylase [Lactobacillus delbrueckii subsp. bulgaricus 2038]
          Length = 438

 Score = 56.6 bits (136), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 12/104 (11%), Positives = 39/104 (37%), Gaps = 8/104 (7%)

Query: 59  SVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRL-DMILCSILRAGVLELIE 117
           +     +      +++G +  + +++  +   +       RL +  +  +L     ++  
Sbjct: 34  AKLPDEESRLATNLVYGTIQYQLYLEYQLKDLVKA-----RLREPYIKPLLLMSAYQIFF 88

Query: 118 CHSVPVEVIISEYVCIAHDFFYGDEPKF--INAVLDKVSRKEEI 159
              VP   ++ E   +A  +       +  +N +L  + R+ E+
Sbjct: 89  LDKVPNRAVLDEANKLAKVYGRPKSSGYRLVNGILRSLLRRGEV 132


>gi|313678447|ref|YP_004056187.1| NusB family protein [Mycoplasma bovis PG45]
 gi|312950674|gb|ADR25269.1| NusB family protein [Mycoplasma bovis PG45]
          Length = 139

 Score = 56.6 bits (136), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 21/99 (21%), Positives = 45/99 (45%), Gaps = 6/99 (6%)

Query: 59  SVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIEC 118
           S    +D E F+ +   +     +    I   L +  ++++L  ++ +IL     EL   
Sbjct: 32  SEESDIDNEQFKQL-ELISLNYDYYQKTILKFLNQNTAWTKLPALVRAILINTTHELF-- 88

Query: 119 HSVPVEVIISEYVCIAHDFFYGDE--PKFINAVLDKVSR 155
            S+  +V+I+E V I   F+  +    K +NA++  + +
Sbjct: 89  -SITPKVVINEAVEITKYFYDTESNFYKLVNAIVQNIYK 126


>gi|308177752|ref|YP_003917158.1| RNA methyltransferase [Arthrobacter arilaitensis Re117]
 gi|307745215|emb|CBT76187.1| putative RNA methyltransferase [Arthrobacter arilaitensis Re117]
          Length = 507

 Score = 56.6 bits (136), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 32/149 (21%), Positives = 57/149 (38%), Gaps = 17/149 (11%)

Query: 12  LSHRRGIA---RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEW 68
              R+  A   RL A + L        S ++  +     +   + +LD        D  +
Sbjct: 38  PGQRKRAADPARLVAFRTL-----REVSGSDAYANLVLPKMIREYQLD------RRDAGF 86

Query: 69  FRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIIS 128
              + +G +  +   D ++++ +      S LD  +   LR G  +L+    VP    + 
Sbjct: 87  ATELAYGALRGQGFYDAILATLVDR--DLSELDPAILDALRLGAHQLLAMR-VPKHAALD 143

Query: 129 EYVCIAHDFFYGDEPKFINAVLDKVSRKE 157
           E V +A           INAVL +VS +E
Sbjct: 144 ETVSLARAQIGAGPSGLINAVLRRVSGQE 172


>gi|326382170|ref|ZP_08203862.1| Fmu (Sun) domain-containing protein [Gordonia neofelifaecis NRRL
           B-59395]
 gi|326198900|gb|EGD56082.1| Fmu (Sun) domain-containing protein [Gordonia neofelifaecis NRRL
           B-59395]
          Length = 480

 Score = 56.6 bits (136), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 29/127 (22%), Positives = 49/127 (38%), Gaps = 3/127 (2%)

Query: 32  IIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCL 91
           I+       + E + Y      +L  E      D      + +G       +D +IS+  
Sbjct: 38  IVARDVLRAVRERDAYANLLLPKLLRERKISGRDAGLATELTYGTARSMGFLDAVISAA- 96

Query: 92  TEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLD 151
                 + +D  L  +LR G  +L+    +     +S  V IA          F+NAVL 
Sbjct: 97  -AGRPAAEIDGPLLDVLRLGAYQLL-RTRIGSHAAVSTSVDIARSENGMGPSGFVNAVLR 154

Query: 152 KVSRKEE 158
           KVS+++E
Sbjct: 155 KVSQRDE 161


>gi|312139583|ref|YP_004006919.1| RNA binding sun protein [Rhodococcus equi 103S]
 gi|311888922|emb|CBH48235.1| putative RNA binding Sun protein [Rhodococcus equi 103S]
          Length = 437

 Score = 56.3 bits (135), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 25/119 (21%), Positives = 43/119 (36%), Gaps = 3/119 (2%)

Query: 40  IISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSR 99
            + E + Y       L  E      D      + +G    +  +D +I+ C         
Sbjct: 4   AVRERDAYANLVLPGLLRERRLDGRDAALATELAYGAARARGLLDAVIAEC--AGRPVEE 61

Query: 100 LDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEE 158
           +D  L  +L  G  +L+     P   + +  V +        +  F+NAVL +VS K E
Sbjct: 62  IDGPLLDVLELGAYQLLRTRIAPHAAVAT-SVDLVRAEAGPGKAGFVNAVLRRVSEKTE 119


>gi|163841091|ref|YP_001625496.1| 16S rRNA m(5)C 967 methyltransferase [Renibacterium salmoninarum
           ATCC 33209]
 gi|162954567|gb|ABY24082.1| 16S rRNA m(5)C 967 methyltransferase [Renibacterium salmoninarum
           ATCC 33209]
          Length = 458

 Score = 56.3 bits (135), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 24/103 (23%), Positives = 44/103 (42%), Gaps = 9/103 (8%)

Query: 58  ESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSIL---RAGVLE 114
           ++     D      + +G +  K   D +I+SC+        L  +  +IL   R G  +
Sbjct: 27  QNRLDKRDAGLATELCYGALRGKGTYDAIIASCVDRP-----LAEVDEAILDALRLGSHQ 81

Query: 115 LIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKE 157
           L+    +P    +++ V +A          FINAVL K++ K+
Sbjct: 82  LLAMR-IPPHAAVNQTVGLARAVIGAGPASFINAVLRKIAAKD 123


>gi|326773324|ref|ZP_08232607.1| ribosomal RNA small subunit methyltransferase B [Actinomyces
           viscosus C505]
 gi|326636554|gb|EGE37457.1| ribosomal RNA small subunit methyltransferase B [Actinomyces
           viscosus C505]
          Length = 515

 Score = 56.3 bits (135), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 27/145 (18%), Positives = 53/145 (36%), Gaps = 15/145 (10%)

Query: 11  KLSHRRG-IARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF 69
           + +  R   AR  A++ L           +  +           +LD        D  + 
Sbjct: 41  RSARGRSDSARQVALEVL-----TRVRRDDAFANLLLPELLETADLD------RRDAGFA 89

Query: 70  RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISE 129
             + +G +  +   D +I++C        R+D  +  +LR G  +L+    V     +S 
Sbjct: 90  TALTYGTLRLRGRYDAMIAACTDR--PLERIDPAVLDVLRLGAHQLMGMR-VAQHAAVST 146

Query: 130 YVCIAHDFFYGDEPKFINAVLDKVS 154
            V +A          F+NAV+ ++S
Sbjct: 147 TVDLATTSCGRGAATFVNAVMRRLS 171


>gi|291300071|ref|YP_003511349.1| Fmu (Sun) domain-containing protein [Stackebrandtia nassauensis DSM
           44728]
 gi|290569291|gb|ADD42256.1| Fmu (Sun) domain protein [Stackebrandtia nassauensis DSM 44728]
          Length = 532

 Score = 56.3 bits (135), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 25/91 (27%), Positives = 42/91 (46%), Gaps = 3/91 (3%)

Query: 65  DLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVE 124
           D  +   + +G + R+  +D +I+S      + S LD  +  +LR GV +L+    V   
Sbjct: 63  DAAFATELSYGTLRRRGSLDAVIASA--SGRAVSALDQSVADVLRLGVYQLLYTR-VAAH 119

Query: 125 VIISEYVCIAHDFFYGDEPKFINAVLDKVSR 155
              +  V +A          F+NAV+ KVSR
Sbjct: 120 AAANTTVSLARKVCGHRPAGFVNAVMRKVSR 150


>gi|325957114|ref|YP_004292526.1| 16S rRNA methyltransferase B [Lactobacillus acidophilus 30SC]
 gi|325333679|gb|ADZ07587.1| 16S rRNA methyltransferase B [Lactobacillus acidophilus 30SC]
          Length = 442

 Score = 56.3 bits (135), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 13/103 (12%), Positives = 35/103 (33%), Gaps = 12/103 (11%)

Query: 59  SVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILC---SILRAGVLEL 115
           S     D      +++G +  +  ++  +           R+ +       +L   + ++
Sbjct: 36  SDLSQADQNLATKVVYGTIQYRLFLEYQLKG-------LVRIKLTEKYLKPLLLMSIYQI 88

Query: 116 IECHSVPVEVIISEYVCIAHDFFYGDEPKF--INAVLDKVSRK 156
           +    VP   ++ E   +A  F       +  +N +L    R+
Sbjct: 89  VFLDKVPNRAVLDEANKLAKQFGKHHSSGYRVVNGILRSFIRR 131


>gi|226355844|ref|YP_002785584.1| methyltransferase RsmB, Sun protein [Deinococcus deserti VCD115]
 gi|226317834|gb|ACO45830.1| putative methyltransferase RsmB, Sun protein [Deinococcus deserti
           VCD115]
          Length = 420

 Score = 56.3 bits (135), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 29/155 (18%), Positives = 53/155 (34%), Gaps = 24/155 (15%)

Query: 1   MTIQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESV 60
           MT    ++    +     AR  AV+ L ++          +                 + 
Sbjct: 1   MTDTRPRRPAPYNP----ARELAVRVLLRVLHADTFAAPALDAALH-----------SAR 45

Query: 61  YLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHS 120
               D      I++G +     +   +S  L+E         +  ++L AG  E +   +
Sbjct: 46  LPARDSGLATHIVYGTLRHHLSLSTALSPLLSEDTH----PKV-RTLLLAGAFEKLYLGT 100

Query: 121 VPVEVIISEYVCIAHDFFYGDE-PKFINAVLDKVS 154
            P  V  SEYV +A         P  +NAVL +++
Sbjct: 101 PPHAVA-SEYVNLAR--GARLAPPGLVNAVLRRIA 132


>gi|260663557|ref|ZP_05864447.1| ribosomal RNA small subunit methyltransferase B [Lactobacillus
           fermentum 28-3-CHN]
 gi|260552098|gb|EEX25151.1| ribosomal RNA small subunit methyltransferase B [Lactobacillus
           fermentum 28-3-CHN]
          Length = 448

 Score = 56.3 bits (135), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 15/100 (15%), Positives = 35/100 (35%), Gaps = 4/100 (4%)

Query: 57  VESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELI 116
                   D      +++G +  ++ +D  +S  +  K    ++   + ++L   + +  
Sbjct: 38  ESGQLSGADRRLVTALVYGTLQHQRTLDYWLSPFIAGK----KVRPWVKTLLLMTLFQYQ 93

Query: 117 ECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRK 156
               VP      E + IA         +F+  VL  + R 
Sbjct: 94  YLDRVPNFAATDEAIEIAKRRGNPGVRRFVTGVLHAILRN 133


>gi|323466286|gb|ADX69973.1| rRNA SAM-dependent methyltransferase RmsB [Lactobacillus helveticus
           H10]
          Length = 448

 Score = 56.3 bits (135), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 16/95 (16%), Positives = 36/95 (37%), Gaps = 6/95 (6%)

Query: 64  VDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPV 123
            D      I++G +  +   +  ++  L  K +    +  L  +L   + ++I    VP 
Sbjct: 47  ADQNLATRIVYGTIQYRLFFEYQLTGLLKTKIT----EKYLKPLLLMSLYQIIFLDKVPN 102

Query: 124 EVIISEYVCIAHDFFYGDEPKF--INAVLDKVSRK 156
             ++ E   +A  F       +  +N +L    R+
Sbjct: 103 RAVLDEANKLAKQFGKHHSSGYRVVNGILRAFIRR 137


>gi|163757448|ref|ZP_02164537.1| putative ribosomal RNA small subunit methyltransferase B [Hoeflea
           phototrophica DFL-43]
 gi|162284950|gb|EDQ35232.1| putative ribosomal RNA small subunit methyltransferase B [Hoeflea
           phototrophica DFL-43]
          Length = 446

 Score = 56.3 bits (135), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 34/169 (20%), Positives = 57/169 (33%), Gaps = 31/169 (18%)

Query: 1   MTIQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESV 60
           M  + +  DLK       AR AA              T +++     R   D  LD    
Sbjct: 1   MPSRYDPVDLKPGL---AARQAA--------------TRLLAAVTESRASLDGLLDPAGG 43

Query: 61  YL------HVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLE 114
                     D    R I+   +   + ID  I   +T           L  +LR G  +
Sbjct: 44  NPAFTGLGPQDRLLVRAILLSALRHLRVIDAYIDELVTS--PLPEGAKALRQLLRVGAAQ 101

Query: 115 LIECHSVPVEVIISEYVCIAHDFFYGDEPKF---INAVLDKVSRKEEIK 160
           ++    VP    +   V  A+        +F   +NA+L ++ R++E +
Sbjct: 102 ILF-LDVPDRAAVDLAVSQAN--GDPRNRRFAGLVNALLRRMGREKESR 147


>gi|227875402|ref|ZP_03993543.1| ribosomal RNA small subunit methyltransferase B [Mobiluncus
           mulieris ATCC 35243]
 gi|269977344|ref|ZP_06184317.1| ribosomal RNA small subunit methyltransferase B [Mobiluncus
           mulieris 28-1]
 gi|307700926|ref|ZP_07637951.1| putative ribosomal RNA small subunit methyltransferase B
           [Mobiluncus mulieris FB024-16]
 gi|227843956|gb|EEJ54124.1| ribosomal RNA small subunit methyltransferase B [Mobiluncus
           mulieris ATCC 35243]
 gi|269934647|gb|EEZ91208.1| ribosomal RNA small subunit methyltransferase B [Mobiluncus
           mulieris 28-1]
 gi|307613921|gb|EFN93165.1| putative ribosomal RNA small subunit methyltransferase B
           [Mobiluncus mulieris FB024-16]
          Length = 485

 Score = 56.3 bits (135), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 22/92 (23%), Positives = 38/92 (41%), Gaps = 3/92 (3%)

Query: 65  DLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVE 124
           D  +   + +G +  +   D +I+  +        LD  + ++LR G  EL+    V   
Sbjct: 59  DAAFATELAYGTLRLQGRYDAIIARLVDR--DLGELDADVLTVLRLGCHELLGMR-VESY 115

Query: 125 VIISEYVCIAHDFFYGDEPKFINAVLDKVSRK 156
             +   V +A D         +NAVL +VS K
Sbjct: 116 AAVDSAVDLARDRISTGPAGMVNAVLRRVSEK 147


>gi|306818715|ref|ZP_07452437.1| ribosomal RNA small subunit methyltransferase B [Mobiluncus
           mulieris ATCC 35239]
 gi|304648401|gb|EFM45704.1| ribosomal RNA small subunit methyltransferase B [Mobiluncus
           mulieris ATCC 35239]
          Length = 485

 Score = 55.9 bits (134), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 22/92 (23%), Positives = 38/92 (41%), Gaps = 3/92 (3%)

Query: 65  DLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVE 124
           D  +   + +G +  +   D +I+  +        LD  + ++LR G  EL+    V   
Sbjct: 59  DAAFATELAYGTLRLQGRYDAIIARLVDR--DLGELDADVLTVLRLGCHELLGMR-VESY 115

Query: 125 VIISEYVCIAHDFFYGDEPKFINAVLDKVSRK 156
             +   V +A D         +NAVL +VS K
Sbjct: 116 AAVDSAVDLARDRISTGPAGMVNAVLRRVSEK 147


>gi|289450433|ref|YP_003475239.1| putative ribosomal RNA small subunit methyltransferase B
           [Clostridiales genomosp. BVAB3 str. UPII9-5]
 gi|289184980|gb|ADC91405.1| putative ribosomal RNA small subunit methyltransferase B
           [Clostridiales genomosp. BVAB3 str. UPII9-5]
          Length = 498

 Score = 55.9 bits (134), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 27/135 (20%), Positives = 50/135 (37%), Gaps = 21/135 (15%)

Query: 20  RLAAVQALYQ----IDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           R AA Q +Y      D+       ++ +   +    +  L V              I++G
Sbjct: 15  REAAAQVIYHCLALHDMASFDP--VLRQTVNFLSLPERNLAV-------------AIVYG 59

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
            M     ID ++           +LD  L S+LR  V +L    ++P   +++E   +  
Sbjct: 60  TMTYLYTIDYVLGKHCKIG--LEKLDPWLKSVLRTAVWQLRYSRNLPETAVVNECCKLVK 117

Query: 136 DFFYGDEPKFINAVL 150
            + +     F NAV+
Sbjct: 118 KYRHQGMVDFANAVM 132


>gi|320534324|ref|ZP_08034813.1| putative ribosomal RNA small subunit methyltransferase B
           [Actinomyces sp. oral taxon 171 str. F0337]
 gi|320133459|gb|EFW25918.1| putative ribosomal RNA small subunit methyltransferase B
           [Actinomyces sp. oral taxon 171 str. F0337]
          Length = 463

 Score = 55.9 bits (134), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 23/102 (22%), Positives = 42/102 (41%), Gaps = 3/102 (2%)

Query: 53  TELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGV 112
            EL   +     D  +   + +G +  +   D +I++C        R+D  +  ILR G 
Sbjct: 21  PELLETADLDRRDAGFATALTYGTLRLQGRYDAMIAACTDR--PLERIDPAVLDILRLGA 78

Query: 113 LELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVS 154
            +L+    V     +S  V +A          F+NAV+ ++S
Sbjct: 79  HQLMGMR-VAQHAAVSTTVDLATTSCGRGAATFVNAVMRRLS 119


>gi|227893309|ref|ZP_04011114.1| rRNA SAM-dependent methyltransferase RmsB [Lactobacillus ultunensis
           DSM 16047]
 gi|227864889|gb|EEJ72310.1| rRNA SAM-dependent methyltransferase RmsB [Lactobacillus ultunensis
           DSM 16047]
          Length = 455

 Score = 55.9 bits (134), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 18/99 (18%), Positives = 40/99 (40%), Gaps = 14/99 (14%)

Query: 64  VDLEWFRVIIHGVMDRKQ----HIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECH 119
            D      I++G +  +      +  LI + LTE++    ++     +L   + ++I  +
Sbjct: 53  ADQNLATRIVYGTIQYRLFLEYQLKGLIRTKLTERY----INP----LLLMSLYQIIFLN 104

Query: 120 SVPVEVIISEYVCIAHDFFYGDEPKF--INAVLDKVSRK 156
            VP   ++ E   +A  F       +  +N +L    R+
Sbjct: 105 KVPNRAVLDEANKLAKQFGRHHSSGYRIVNGILRSFIRR 143


>gi|221640599|ref|YP_002526861.1| Fmu (Sun) domain-containing protein [Rhodobacter sphaeroides KD131]
 gi|221161380|gb|ACM02360.1| Fmu (Sun) domain protein [Rhodobacter sphaeroides KD131]
          Length = 410

 Score = 55.9 bits (134), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 20/126 (15%), Positives = 46/126 (36%), Gaps = 9/126 (7%)

Query: 31  DIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSC 90
           +  G + T + +     +  +    D+       +    + +   V+      D L++  
Sbjct: 4   EARGMAVTLLDAVLGEGKLLSQALADLPGTAAPAERARAQRLASSVLRHLGPADRLLAPH 63

Query: 91  LTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEP--KFINA 148
           L +          + +ILR   +E+    + P  V+ S  V +A       +     +NA
Sbjct: 64  LRKAPPL-----TVRNILRLATVEMAADGAAPHGVV-SSAVDLARR-GRRTQHLAGLVNA 116

Query: 149 VLDKVS 154
           VL +++
Sbjct: 117 VLRRIA 122


>gi|157373174|ref|YP_001471774.1| sun protein [Shewanella sediminis HAW-EB3]
 gi|157315548|gb|ABV34646.1| sun protein [Shewanella sediminis HAW-EB3]
          Length = 426

 Score = 55.9 bits (134), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 28/139 (20%), Positives = 53/139 (38%), Gaps = 15/139 (10%)

Query: 20  RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79
           R  A + ++Q+   G S +  + + + +            +    D      + +GVM  
Sbjct: 4   RALAAKVVFQVLEKGISLSVALPDQQRH------------LESGKDKALMAELCYGVMRH 51

Query: 80  KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139
              +D L+S C+++         IL  +L  G  +L     +P    ISE         +
Sbjct: 52  LPQLDKLVSDCMSK--PLKGKQRILHQLLLVGCYQL-YFTRIPSHAAISETAEACRQLKF 108

Query: 140 GDEPKFINAVLDKVSRKEE 158
               K +N VL  + R+E+
Sbjct: 109 EGLVKVVNGVLRNIQRQEK 127


>gi|116629419|ref|YP_814591.1| tRNA and rRNA cytosine-C5-methylase [Lactobacillus gasseri ATCC
           33323]
 gi|311110932|ref|ZP_07712329.1| ribosomal RNA small subunit methyltransferase B [Lactobacillus
           gasseri MV-22]
 gi|116095001|gb|ABJ60153.1| tRNA and rRNA cytosine-C5-methylase [Lactobacillus gasseri ATCC
           33323]
 gi|311066086|gb|EFQ46426.1| ribosomal RNA small subunit methyltransferase B [Lactobacillus
           gasseri MV-22]
          Length = 438

 Score = 55.9 bits (134), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 25/145 (17%), Positives = 50/145 (34%), Gaps = 17/145 (11%)

Query: 17  GIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGV 76
             AR  A++ L           ++ ++        + EL V+      D      I++G 
Sbjct: 2   SNARTVALETL----------IKVFNQKSYSNIALNNEL-VKHELKPADKALATRIVYGT 50

Query: 77  MDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHD 136
           +  K  ++  +   +  K      D  L  +L     +      VP   I  E   +A  
Sbjct: 51  IQYKIFLEYQLKPLIKTKLR----DKFLMPLLLMSAYQYFFLEKVPANAIFDEANKLAKK 106

Query: 137 FFYGD--EPKFINAVLDKVSRKEEI 159
           F   +    K +N +L  + R+ ++
Sbjct: 107 FAKKNSGSYKLVNGILRALERQGKV 131


>gi|224369793|ref|YP_002603957.1| RsmB [Desulfobacterium autotrophicum HRM2]
 gi|223692510|gb|ACN15793.1| RsmB [Desulfobacterium autotrophicum HRM2]
          Length = 455

 Score = 55.9 bits (134), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 28/133 (21%), Positives = 50/133 (37%), Gaps = 12/133 (9%)

Query: 20  RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79
           R  A+  L + +    +  +I+  Y                  H D      II+G +  
Sbjct: 17  RFLALTILIENESSKFTLDKILERYSA----------QLESLAHRDRALANAIIYGTLRW 66

Query: 80  KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139
           K+H+D LI+          +++  +C  LR  + + +    +PV   ++  V  A     
Sbjct: 67  KEHLDWLITPFSKR--PLDQIEPAICYTLRTALYQTVFMDKIPVSAAVNTAVNAAKKLSN 124

Query: 140 GDEPKFINAVLDK 152
                F+NAVL K
Sbjct: 125 TGAAGFVNAVLRK 137


>gi|260495441|ref|ZP_05815567.1| ribosomal RNA small subunit methyltransferase B [Fusobacterium sp.
           3_1_33]
 gi|260196978|gb|EEW94499.1| ribosomal RNA small subunit methyltransferase B [Fusobacterium sp.
           3_1_33]
          Length = 435

 Score = 55.9 bits (134), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 18/99 (18%), Positives = 41/99 (41%), Gaps = 12/99 (12%)

Query: 65  DLEWFRVIIHGVMDRKQHIDLLISSC---LTEKWSFSRLDMILCSILRAGVLELIECHSV 121
           +  +   I +GV+  K+ +D +I      + ++W        + ++LR  + ++   +S 
Sbjct: 37  EKTFITEIFYGVLRNKKFLDYIIERYTKEIKKEW--------IRNLLRISIYQITFMNSD 88

Query: 122 PVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIK 160
              V+  E   +    +     KFIN  L    R ++ +
Sbjct: 89  DKGVVW-EATELVKKKYGMTISKFINGTLRNYLRNKDTE 126


>gi|238852568|ref|ZP_04642978.1| ribosomal RNA small subunit methyltransferase B [Lactobacillus
           gasseri 202-4]
 gi|238834714|gb|EEQ26941.1| ribosomal RNA small subunit methyltransferase B [Lactobacillus
           gasseri 202-4]
          Length = 438

 Score = 55.9 bits (134), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 25/145 (17%), Positives = 50/145 (34%), Gaps = 17/145 (11%)

Query: 17  GIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGV 76
             AR  A++ L           ++ ++        + EL V+      D      I++G 
Sbjct: 2   SNARTVALETL----------IKVFNQKSYSNIALNNEL-VKHELKPADKALATRIVYGT 50

Query: 77  MDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHD 136
           +  K  ++  +   +  K      D  L  +L     +      VP   I  E   +A  
Sbjct: 51  IQYKIFLEYQLKPLIKTKLR----DKFLMPLLLMSAYQYFFLEKVPANAIFDEANKLAKK 106

Query: 137 FFYGD--EPKFINAVLDKVSRKEEI 159
           F   +    K +N +L  + R+ ++
Sbjct: 107 FAKKNSGSYKLVNGILRALERQGKV 131


>gi|126463525|ref|YP_001044639.1| Fmu (Sun) domain-containing protein [Rhodobacter sphaeroides ATCC
           17029]
 gi|126105189|gb|ABN77867.1| Fmu (Sun) domain protein [Rhodobacter sphaeroides ATCC 17029]
          Length = 410

 Score = 55.9 bits (134), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 20/126 (15%), Positives = 46/126 (36%), Gaps = 9/126 (7%)

Query: 31  DIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSC 90
           +  G + T + +     +  +    D+       +    + +   V+      D L++  
Sbjct: 4   EARGMAVTLLDAVLGEGKLLSQALADLPGTAAPAERARAQRLASSVLRHLGPADRLLAPH 63

Query: 91  LTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEP--KFINA 148
           L +          + +ILR   +E+    + P  V+ S  V +A       +     +NA
Sbjct: 64  LRKAPPL-----TVRNILRLATVEMAADGAAPHGVV-SSAVDLARR-GRRTQHLAGLVNA 116

Query: 149 VLDKVS 154
           VL +++
Sbjct: 117 VLRRIA 122


>gi|268319212|ref|YP_003292868.1| rRNA methylase [Lactobacillus johnsonii FI9785]
 gi|262397587|emb|CAX66601.1| rRNA methylase [Lactobacillus johnsonii FI9785]
          Length = 440

 Score = 55.9 bits (134), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 24/145 (16%), Positives = 50/145 (34%), Gaps = 17/145 (11%)

Query: 17  GIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGV 76
             AR  A++ L           ++ ++        + EL ++      D      I++G 
Sbjct: 2   SNARTVALETL----------IKVFNQKSYSNIALNNEL-IKHDLKLADKALATRIVYGT 50

Query: 77  MDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHD 136
           +  K  ++  +   +  K      D  L  +L     +      VP   I  E   +A  
Sbjct: 51  IQYKIFLEYQLKPLIKTKLR----DSFLKPLLLMSAYQYFFLEKVPANAIFDEANKLAKK 106

Query: 137 FFYGD--EPKFINAVLDKVSRKEEI 159
           +   +    K +N +L  + R+ +I
Sbjct: 107 YSKRNSGSYKLVNGILRALERQGKI 131


>gi|170724406|ref|YP_001758432.1| sun protein [Shewanella woodyi ATCC 51908]
 gi|169809753|gb|ACA84337.1| sun protein [Shewanella woodyi ATCC 51908]
          Length = 425

 Score = 55.5 bits (133), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 32/139 (23%), Positives = 53/139 (38%), Gaps = 15/139 (10%)

Query: 20  RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79
           R  A + ++Q+   G S +  + E + +                 D      + +GVM +
Sbjct: 4   RALAAKVVFQVLEKGISLSVALPEQQKH------------CESGKDKALLAELSYGVMRQ 51

Query: 80  KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139
              +D LIS C+ +         IL  +L  G  +L     +P    ISE         +
Sbjct: 52  LPQLDKLISDCMAK--PLKGKQRILHQLLLVGCYQL-YFTRIPSHAAISETAEACRQLKF 108

Query: 140 GDEPKFINAVLDKVSRKEE 158
               K INAVL  + R+E+
Sbjct: 109 DGLVKVINAVLRNIQRQEK 127


>gi|317154835|ref|YP_004122883.1| NusB/RsmB/TIM44 [Desulfovibrio aespoeensis Aspo-2]
 gi|316945086|gb|ADU64137.1| NusB/RsmB/TIM44 [Desulfovibrio aespoeensis Aspo-2]
          Length = 425

 Score = 55.5 bits (133), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 27/156 (17%), Positives = 45/156 (28%), Gaps = 20/156 (12%)

Query: 3   IQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYL 62
            Q   K L        AR  A++AL      G      +    +                
Sbjct: 2   NQHTPKPLPP------ARRIALEALSHCLFSGHDIQATLDTALS-----------AKPTD 44

Query: 63  HVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVP 122
             D      I +G +  K  ++ ++S  L       +L   +   +     E+I    VP
Sbjct: 45  PRDTGLATEIAYGYLRHKGRVEYVLSRFLQ---DPGKLPPKMRLAMGVAAYEMIFLDKVP 101

Query: 123 VEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEE 158
               +   V  +            NAVL +V+   E
Sbjct: 102 AYASVDWAVEFSKTKPGTRLSGLFNAVLRRVAELGE 137


>gi|227890276|ref|ZP_04008081.1| rRNA SAM-dependent methyltransferase RmsB [Lactobacillus johnsonii
           ATCC 33200]
 gi|227849090|gb|EEJ59176.1| rRNA SAM-dependent methyltransferase RmsB [Lactobacillus johnsonii
           ATCC 33200]
          Length = 438

 Score = 55.5 bits (133), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 24/145 (16%), Positives = 50/145 (34%), Gaps = 17/145 (11%)

Query: 17  GIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGV 76
             AR  A++ L           ++ ++        + EL ++      D      I++G 
Sbjct: 2   SNARTVALETL----------IKVFNQKSYSNIALNNEL-IKHDLKLADKALATRIVYGT 50

Query: 77  MDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHD 136
           +  K  ++  +   +  K      D  L  +L     +      VP   I  E   +A  
Sbjct: 51  IQYKIFLEYQLKPLIKTKLR----DSFLKPLLLMSAYQYFFLEKVPANAIFDEANKLAKK 106

Query: 137 FFYGD--EPKFINAVLDKVSRKEEI 159
           +   +    K +N +L  + R+ +I
Sbjct: 107 YSKRNSGSYKLVNGILRALERQGKI 131


>gi|78185142|ref|YP_377577.1| Fmu, rRNA SAM-dependent methyltransferase [Synechococcus sp.
           CC9902]
 gi|78169436|gb|ABB26533.1| Fmu, rRNA SAM-dependent methyltransferase [Synechococcus sp.
           CC9902]
          Length = 445

 Score = 55.5 bits (133), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 20/111 (18%), Positives = 40/111 (36%), Gaps = 18/111 (16%)

Query: 65  DLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMI--------LCSILRAGVLELI 116
           D      + +G + +++ +D          W   R+  +        L  +L  G+ +L+
Sbjct: 45  DRGLATELAYGAIRQRRVLD---------GW-LDRMGKVPASKQPPKLRWLLHVGLYQLL 94

Query: 117 ECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRSGCVSA 167
               +P    ++  V +A     G     +N +L  V R  E      +SA
Sbjct: 95  LMERIPSAAAVNTTVELAKVSGLGRLAPVVNGLLRGVLRAHEAGEMLELSA 145


>gi|326803898|ref|YP_004321716.1| ribosomal RNA small subunit methyltransferase B [Aerococcus urinae
           ACS-120-V-Col10a]
 gi|326650964|gb|AEA01147.1| ribosomal RNA small subunit methyltransferase B [Aerococcus urinae
           ACS-120-V-Col10a]
          Length = 470

 Score = 55.5 bits (133), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 28/150 (18%), Positives = 53/150 (35%), Gaps = 24/150 (16%)

Query: 11  KLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFR 70
           K S  +  AR  A++ L            ++ + E +      ++   S     D + + 
Sbjct: 15  KPSGLKASARYQAMETL-----------NLVYKGEAFVNQEVNQVLSYSRVEDSDRDLYT 63

Query: 71  VIIHGVMDRKQHIDLLISSCL-----TEKWSFSRLDMILCSILRAGVLELIECHSVPVEV 125
            +++G +     +  L+   L     T+KW        L ++L     +     +VP   
Sbjct: 64  RLVYGSLQFHWTLQELLKQVLKLYKRTKKW--------LLALLELSAYQHYYLDAVPDHA 115

Query: 126 IISEYVCIAHDFFYGDEPKFINAVLDKVSR 155
           I+ E V IA         +F N  L  + R
Sbjct: 116 IVDEAVRIAKKRGNQTMGRFTNGTLRNLFR 145


>gi|86741875|ref|YP_482275.1| putative RNA-binding Sun protein [Frankia sp. CcI3]
 gi|86568737|gb|ABD12546.1| putative RNA-binding Sun protein [Frankia sp. CcI3]
          Length = 491

 Score = 55.5 bits (133), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 21/119 (17%), Positives = 43/119 (36%), Gaps = 3/119 (2%)

Query: 36  STTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKW 95
                + E  +Y       L   S     D  +   + +G +  +  +D ++ +  +   
Sbjct: 27  EVLRAVDERGSYANLLLPSLLAGSGLSARDRGFVTELAYGSLRAQGTLDGVLDTATSR-- 84

Query: 96  SFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVS 154
               +D  +   LR G  +L+    VP    ++  V +          +F NAVL +V+
Sbjct: 85  PVHTIDPPVRDALRLGAYQLL-RTRVPAHAAVASTVELVRTTSGERPVRFANAVLRRVA 142


>gi|325068809|ref|ZP_08127482.1| tRNA/rRNA cytosine-C5-methylase [Actinomyces oris K20]
          Length = 253

 Score = 55.5 bits (133), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 23/102 (22%), Positives = 42/102 (41%), Gaps = 3/102 (2%)

Query: 53  TELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGV 112
            EL   +     D  +   + +G +  +   D +I++C        R+D  +  +LR G 
Sbjct: 21  PELLETADLDRRDAGFATALTYGTLRLQGRYDAMIAACTDR--PLERIDPAVLDVLRLGA 78

Query: 113 LELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVS 154
            +L+    V     +S  V +A          F+NAVL ++S
Sbjct: 79  HQLMGMR-VAQHAAVSTTVDLATTSCGRGAATFVNAVLRRLS 119


>gi|220912433|ref|YP_002487742.1| Fmu (Sun) domain protein [Arthrobacter chlorophenolicus A6]
 gi|219859311|gb|ACL39653.1| Fmu (Sun) domain protein [Arthrobacter chlorophenolicus A6]
          Length = 527

 Score = 55.5 bits (133), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 33/155 (21%), Positives = 56/155 (36%), Gaps = 17/155 (10%)

Query: 3   IQDNKKDLKLSHR-RGI--ARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVES 59
            Q N  +   + R R    ARL A + L             +++ + Y          + 
Sbjct: 50  PQRNFTENAPAQRTRRADPARLVAFEVL-----------RAVAQEDAYANLVLPARIRQH 98

Query: 60  VYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECH 119
                D  +   +  G +  +   D +++ C+       +LD  +   LR GV +L+   
Sbjct: 99  RLDKRDAGFATELSCGALRGQGTYDAVLARCVDR--PLDQLDPAVLDALRIGVHQLLAMR 156

Query: 120 SVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVS 154
            VP    + + V +A           INAVL KVS
Sbjct: 157 -VPAHAALDQTVGLARAVIGAGPSALINAVLRKVS 190


>gi|28378317|ref|NP_785209.1| rRNA methylase (putative) [Lactobacillus plantarum WCFS1]
 gi|28271152|emb|CAD64057.1| rRNA methylase (putative) [Lactobacillus plantarum WCFS1]
          Length = 447

 Score = 55.5 bits (133), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 15/110 (13%), Positives = 44/110 (40%), Gaps = 3/110 (2%)

Query: 46  TYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILC 105
            Y      +L  +      D+     +++GV+  +  ++  ++  +       ++D  + 
Sbjct: 23  AYSNLQLNQLINDHQMDRRDINLLTNMVYGVIQHRLTLEYWLTPFVRH---PHQIDPWVR 79

Query: 106 SILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSR 155
            +L + + +      +P   + +E + IA    +    +F+  VL ++ R
Sbjct: 80  ELLLSALYQWQYLDKIPQRAVFNETIEIAKVKGHPGIRRFVTGVLHQMDR 129


>gi|315172961|gb|EFU16978.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
           faecalis TX1346]
          Length = 459

 Score = 55.5 bits (133), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 23/104 (22%), Positives = 45/104 (43%), Gaps = 3/104 (2%)

Query: 53  TELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGV 112
            E+  +S     D   F  +++G + RK  ++  ++  + +     R+D  + ++L   +
Sbjct: 36  NEMMTKSELSEKDGRLFTELVYGTISRKLLLEYYLTPFVKK---PQRVDNWVKNLLILSL 92

Query: 113 LELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRK 156
            +L+    VP   +I+E V I          KF+N VL    R 
Sbjct: 93  YQLLYLDKVPDHAVINEAVEIGKRRGNTGIGKFVNGVLRAFQRN 136


>gi|254556524|ref|YP_003062941.1| rRNA methylase (putative) [Lactobacillus plantarum JDM1]
 gi|254045451|gb|ACT62244.1| rRNA methylase (putative) [Lactobacillus plantarum JDM1]
          Length = 447

 Score = 55.5 bits (133), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 15/110 (13%), Positives = 44/110 (40%), Gaps = 3/110 (2%)

Query: 46  TYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILC 105
            Y      +L  +      D+     +++GV+  +  ++  ++  +       ++D  + 
Sbjct: 23  AYSNLQLNQLINDHQMDRRDINLLTNMVYGVIQHRLTLEYWLTPFVRH---PHQIDPWVR 79

Query: 106 SILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSR 155
            +L + + +      +P   + +E + IA    +    +F+  VL ++ R
Sbjct: 80  ELLLSALYQWQYLDKIPQRAVFNETIEIAKVKGHPGIRRFVTGVLHQMDR 129


>gi|300767253|ref|ZP_07077165.1| ribosomal RNA small subunit methyltransferase B [Lactobacillus
           plantarum subsp. plantarum ATCC 14917]
 gi|308180467|ref|YP_003924595.1| ribosomal RNA small subunit methyltransferase B [Lactobacillus
           plantarum subsp. plantarum ST-III]
 gi|300495072|gb|EFK30228.1| ribosomal RNA small subunit methyltransferase B [Lactobacillus
           plantarum subsp. plantarum ATCC 14917]
 gi|308045958|gb|ADN98501.1| ribosomal RNA small subunit methyltransferase B [Lactobacillus
           plantarum subsp. plantarum ST-III]
          Length = 447

 Score = 55.5 bits (133), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 15/110 (13%), Positives = 44/110 (40%), Gaps = 3/110 (2%)

Query: 46  TYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILC 105
            Y      +L  +      D+     +++GV+  +  ++  ++  +       ++D  + 
Sbjct: 23  AYSNLQLNQLINDHQMDRRDINLLTNMVYGVIQHRLTLEYWLTPFVRH---PHQIDPWVR 79

Query: 106 SILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSR 155
            +L + + +      +P   + +E + IA    +    +F+  VL ++ R
Sbjct: 80  ELLLSALYQWQYLDKIPQRAVFNETIEIAKVKGHPGIRRFVTGVLHQMDR 129


>gi|254821720|ref|ZP_05226721.1| Fmu protein [Mycobacterium intracellulare ATCC 13950]
          Length = 171

 Score = 55.1 bits (132), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 22/101 (21%), Positives = 40/101 (39%), Gaps = 3/101 (2%)

Query: 58  ESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIE 117
           E      D  +   + +G    +  +D +I +      +   +D +L  +LR G  +L+ 
Sbjct: 10  ERGITGRDAAFATELTYGACRSRGLLDAVIGAA--AGRTPQAIDPVLLDLLRLGAYQLL- 66

Query: 118 CHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEE 158
              V     +S  V  A   F      F+N VL  +S ++E
Sbjct: 67  RTRVDAHAAVSTTVEQAGIEFDSARAGFVNGVLRTISGRDE 107


>gi|260903811|ref|ZP_05912133.1| Fmu (Sun) domain protein [Brevibacterium linens BL2]
          Length = 492

 Score = 55.1 bits (132), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 18/94 (19%), Positives = 38/94 (40%), Gaps = 4/94 (4%)

Query: 61  YLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHS 120
               D  +   + +G + +++  D +I+           +D    + +R G  +++    
Sbjct: 80  MEPQDAAFTTELTYGALRQQEFYDAIIARA--ANRPIDSIDAEPLAGMRLGAHQILSMR- 136

Query: 121 VPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVS 154
           VP    +SE V +           F+NAVL ++S
Sbjct: 137 VPDHAALSETVAVIKT-NAPKTAGFVNAVLRRIS 169


>gi|256960468|ref|ZP_05564639.1| fmu [Enterococcus faecalis Merz96]
 gi|293385126|ref|ZP_06630952.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
           faecalis R712]
 gi|293389099|ref|ZP_06633571.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
           faecalis S613]
 gi|312906690|ref|ZP_07765690.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
           faecalis DAPTO 512]
 gi|312910848|ref|ZP_07769684.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
           faecalis DAPTO 516]
 gi|256950964|gb|EEU67596.1| fmu [Enterococcus faecalis Merz96]
 gi|291077603|gb|EFE14967.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
           faecalis R712]
 gi|291081567|gb|EFE18530.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
           faecalis S613]
 gi|310627338|gb|EFQ10621.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
           faecalis DAPTO 512]
 gi|311288871|gb|EFQ67427.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
           faecalis DAPTO 516]
          Length = 459

 Score = 55.1 bits (132), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 23/104 (22%), Positives = 45/104 (43%), Gaps = 3/104 (2%)

Query: 53  TELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGV 112
            E+  +S     D   F  +++G + RK  ++  ++  + +     R+D  + ++L   +
Sbjct: 36  NEMMTKSELSEKDGRLFTELVYGTISRKLLLEYYLTPFVKK---PQRVDNWVKNLLILSL 92

Query: 113 LELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRK 156
            +L+    VP   +I+E V I          KF+N VL    R 
Sbjct: 93  YQLLYLDKVPDHAVINEAVEIGKRRGNPGIGKFVNGVLRAFQRN 136


>gi|116072280|ref|ZP_01469547.1| Fmu, rRNA SAM-dependent methyltransferase [Synechococcus sp. BL107]
 gi|116064802|gb|EAU70561.1| Fmu, rRNA SAM-dependent methyltransferase [Synechococcus sp. BL107]
          Length = 445

 Score = 55.1 bits (132), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 19/111 (17%), Positives = 40/111 (36%), Gaps = 18/111 (16%)

Query: 65  DLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMI--------LCSILRAGVLELI 116
           D      + +G + +++ +D          W   R+  +        L  +L  G+ +L+
Sbjct: 45  DRGLATELAYGAIRQRRILD---------GW-LDRMGKVPAAKQPPKLRWLLHVGLYQLL 94

Query: 117 ECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRSGCVSA 167
               +P    ++  V +A           +N +L  V R  E   +  +SA
Sbjct: 95  MMERIPSAAAVNTTVELAKVSGLARLAPVVNGLLRGVLRAHESGETLELSA 145


>gi|114799841|ref|YP_762041.1| putative ribosomal RNA small subunit methyltransferase B
           [Hyphomonas neptunium ATCC 15444]
 gi|114740015|gb|ABI78140.1| putative ribosomal RNA small subunit methyltransferase B
           [Hyphomonas neptunium ATCC 15444]
          Length = 423

 Score = 55.1 bits (132), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 24/103 (23%), Positives = 40/103 (38%), Gaps = 4/103 (3%)

Query: 56  DVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLEL 115
           D  +     D  + R I    +     ID  +S  L+     S     + +++RAG  ++
Sbjct: 32  DAYNNLDGSDRAFARAIASSALRHLGWIDRGVSPFLSR--PLSATGAEIRALIRAGAAQI 89

Query: 116 IECHSVPVEVIISEYVCIAHDFFYGDE-PKFINAVLDKVSRKE 157
                VP    +SE V  A  +        F+NA L +V+  E
Sbjct: 90  WFM-DVPHHAAVSETVEAARLWSPARSGGGFLNAALRRVTESE 131


>gi|325973210|ref|YP_004250274.1| transcription antitermination factor NusB [Mycoplasma suis str.
           Illinois]
 gi|325989654|ref|YP_004249353.1| transcription termination factor N-utilization substance protein B
           [Mycoplasma suis KI3806]
 gi|323574739|emb|CBZ40395.1| Transcription termination factor N-utilization substance protein B
           [Mycoplasma suis]
 gi|323651812|gb|ADX97894.1| transcription antitermination factor NusB [Mycoplasma suis str.
           Illinois]
          Length = 145

 Score = 55.1 bits (132), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 30/124 (24%), Positives = 51/124 (41%), Gaps = 4/124 (3%)

Query: 38  TEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSF 97
             I S+          ++         D EW   I    +  K      I++ L + W  
Sbjct: 22  EAIYSDLIWSELNESRKIGEVGKNFWSDFEW--RIFKKYIKNKDSFIEQINNLLRDDWDV 79

Query: 98  SRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKE 157
            RL++ + +IL     E     + P  V+I + V IA D+   DE K ++AV+D   +K 
Sbjct: 80  GRLNLSILAILLEAFSEYSVYKTTP-AVLIQQSVQIAKDYG-EDEYKLVHAVIDNYIKKL 137

Query: 158 EIKR 161
           +I+ 
Sbjct: 138 QIQE 141


>gi|288957078|ref|YP_003447419.1| Sun protein [Azospirillum sp. B510]
 gi|288909386|dbj|BAI70875.1| Sun protein [Azospirillum sp. B510]
          Length = 431

 Score = 54.7 bits (131), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 27/140 (19%), Positives = 55/140 (39%), Gaps = 17/140 (12%)

Query: 18  IARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVM 77
            AR  A+  L           +++ +   +    D   ++ S+    D  + R+++  V+
Sbjct: 7   AARGVALDLL----------RDVLRKSVPFDDAFDAHPELASLQPR-DRGFVRLLVATVL 55

Query: 78  DRKQHIDLLISSCLTE-KWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHD 136
            R   ID +I + L +     + +  +    LR G  +L+   + P    +   V +A  
Sbjct: 56  RRLGQIDEMIQASLAKPGLPKAAIHDM----LRLGTAQLVF-LNTPAHAAVDTAVELAAA 110

Query: 137 FFYGDEPKFINAVLDKVSRK 156
                    INAVL ++ R+
Sbjct: 111 RNAAPYKGLINAVLRRIGRE 130


>gi|157959859|ref|YP_001499893.1| sun protein [Shewanella pealeana ATCC 700345]
 gi|157844859|gb|ABV85358.1| sun protein [Shewanella pealeana ATCC 700345]
          Length = 426

 Score = 54.7 bits (131), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 26/139 (18%), Positives = 54/139 (38%), Gaps = 15/139 (10%)

Query: 20  RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79
           R  A + ++Q+   G S +  + + + +            +    D      + +GVM  
Sbjct: 4   RALAAKVVFQVLEKGISLSVALPDQQRH------------LDSGKDKALLAELCYGVMRH 51

Query: 80  KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139
              +D  +S C++++    +   I+  +L  G  +L     +P    ISE         +
Sbjct: 52  LPQLDKQVSDCMSKQMKGKQ--RIVHQLLLIGCYQL-YFTRIPSHAAISETAEACRQLKF 108

Query: 140 GDEPKFINAVLDKVSRKEE 158
               K +N VL  + R+E+
Sbjct: 109 EGLVKVVNGVLRNIQRQEK 127


>gi|296117963|ref|ZP_06836546.1| sun protein [Corynebacterium ammoniagenes DSM 20306]
 gi|295969194|gb|EFG82436.1| sun protein [Corynebacterium ammoniagenes DSM 20306]
          Length = 426

 Score = 54.7 bits (131), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 16/111 (14%), Positives = 41/111 (36%), Gaps = 9/111 (8%)

Query: 65  DLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVE 124
           D  +   + +G +  +  +D +I    +       L + +   LR G  +L+     P  
Sbjct: 25  DAAFATELAYGTLRAEGVLDAIIGEHSSRG--LDTLAIEVLDALRVGTYQLMYTRVEPHA 82

Query: 125 VIISEYVCIAHDFFYGDEPKFINAVLDKVSRKE------EIKRSGCVSAIT 169
             +   V +     +     F+N ++  ++R        ++  +G + A+ 
Sbjct: 83  -AVDTTVRLVQAAGHEKAKGFVNGIMRSITRANPETLLDKLTPAGEIEALA 132


>gi|78212348|ref|YP_381127.1| sun protein [Synechococcus sp. CC9605]
 gi|78196807|gb|ABB34572.1| sun protein [Synechococcus sp. CC9605]
          Length = 445

 Score = 54.7 bits (131), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 23/152 (15%), Positives = 47/152 (30%), Gaps = 31/152 (20%)

Query: 20  RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79
           R  A       D++        ++    R   + +L         D      + +G + +
Sbjct: 15  RRLA------WDVLQAVAAGAYADVALERVLRERDLKPS------DRGLVTELAYGAIRQ 62

Query: 80  KQHIDLLISSCLTEKWSFSRLDMI--------LCSILRAGVLELIECHSVPVEVIISEYV 131
           ++ +D          W   RL  +        L  +L  G+ +L+    +P    ++  V
Sbjct: 63  RRTLDA---------W-LDRLGKVPALKQPPKLRWLLHVGLYQLLLMERIPDSAAVNTAV 112

Query: 132 CIAHDF-FYGDEPKFINAVLDKVSRKEEIKRS 162
            +A            +N VL    R  E   +
Sbjct: 113 ELAKTSKGLARLAPVVNGVLRAALRAREAGET 144


>gi|119961729|ref|YP_947575.1| ribosomal RNA small subunit methyltransferase B [Arthrobacter
           aurescens TC1]
 gi|119948588|gb|ABM07499.1| ribosomal RNA small subunit methyltransferase B [Arthrobacter
           aurescens TC1]
          Length = 516

 Score = 54.7 bits (131), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 30/148 (20%), Positives = 54/148 (36%), Gaps = 14/148 (9%)

Query: 6   NKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVD 65
           N    + + R   ARL A + L        ++ +  +         +  LD        D
Sbjct: 48  NNAPSQRTRRADPARLVAFEVL-----RAVASEDAYANLVLPARIREHRLD------RRD 96

Query: 66  LEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEV 125
             +   + +G +  +   D +++ C+       +LD  +   LR G  +L+    VP   
Sbjct: 97  AGFATELSYGALRGQGTYDAILARCVDR--PLEQLDPAILDALRIGAHQLLSMR-VPAHA 153

Query: 126 IISEYVCIAHDFFYGDEPKFINAVLDKV 153
            + + V +A           INAVL KV
Sbjct: 154 ALDQTVGLARAVIGAGPSALINAVLRKV 181


>gi|114561210|ref|YP_748723.1| sun protein [Shewanella frigidimarina NCIMB 400]
 gi|114332503|gb|ABI69885.1| sun protein [Shewanella frigidimarina NCIMB 400]
          Length = 427

 Score = 54.7 bits (131), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 29/138 (21%), Positives = 53/138 (38%), Gaps = 15/138 (10%)

Query: 20  RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79
           R  A +A+Y++   G S +  + + + +            +    D      + +GVM +
Sbjct: 4   RALAAKAIYEVLEKGISLSVALPDQQQH------------LQNGKDKALLAELCYGVMRQ 51

Query: 80  KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139
              +D  +S CL +   F     IL  +L  G  +L     +P    ISE         +
Sbjct: 52  LPQLDKCVSDCLAK--PFKGKQRILHQLLIVGCYQL-YFTRIPAHAAISETAEACRQLRF 108

Query: 140 GDEPKFINAVLDKVSRKE 157
               K +N VL  + R++
Sbjct: 109 DGLVKVVNGVLRNIQRQD 126


>gi|322418095|ref|YP_004197318.1| sun protein [Geobacter sp. M18]
 gi|320124482|gb|ADW12042.1| sun protein [Geobacter sp. M18]
          Length = 479

 Score = 54.7 bits (131), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 31/139 (22%), Positives = 54/139 (38%), Gaps = 14/139 (10%)

Query: 20  RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79
           R AA   L            I  E        D EL  + +    D      +++GV+ R
Sbjct: 37  RRAAFDIL----------LRIEKEKSFADILIDHELSKD-MIKGADRGLLTELVYGVLRR 85

Query: 80  KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139
           +  +D +I     +     +L++ +  +LR G+ +      VPV   ++E V +A +   
Sbjct: 86  QGTLDHIIGQFSKQ--RTDKLELYVLLLLRLGLYQCFFLDRVPVSAAVNETVKLAKEL-A 142

Query: 140 GDEPKFINAVLDKVSRKEE 158
                FINA+L    R  +
Sbjct: 143 PRASGFINAILRNADRNRD 161


>gi|116073315|ref|ZP_01470577.1| Fmu, rRNA SAM-dependent methyltransferase [Synechococcus sp.
           RS9916]
 gi|116068620|gb|EAU74372.1| Fmu, rRNA SAM-dependent methyltransferase [Synechococcus sp.
           RS9916]
          Length = 456

 Score = 54.7 bits (131), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 17/106 (16%), Positives = 36/106 (33%), Gaps = 18/106 (16%)

Query: 65  DLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMI--------LCSILRAGVLELI 116
           D      + +G + +++ +D          W   RL  +        L  +L  G+ +L+
Sbjct: 59  DRGLVTELAYGAIRQRRWLD---------GW-LDRLGKVPARKQPPRLRWLLHVGLYQLL 108

Query: 117 ECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRS 162
               +P    ++  V +A           +N +L    R +E    
Sbjct: 109 CMERIPAAAAVNTSVELAKRHGLNRLAPVVNGLLRGALRAQEAGEQ 154


>gi|184200812|ref|YP_001855019.1| putative rRNA (cytosine-C(5)-)-methyltransferase [Kocuria
           rhizophila DC2201]
 gi|183581042|dbj|BAG29513.1| putative rRNA methyltransferase [Kocuria rhizophila DC2201]
          Length = 553

 Score = 54.7 bits (131), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 32/152 (21%), Positives = 55/152 (36%), Gaps = 17/152 (11%)

Query: 12  LSHRRGI---ARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEW 68
              RR     ARLAA +AL        ++ +            +  LD        D  +
Sbjct: 82  PGQRRRQSDPARLAAFRAL-----RAVTSEDAYGNLVLPGLVRELRLD------RRDAAF 130

Query: 69  FRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIIS 128
              + +G M      D +++ C+       +LD  +   LR G  +L+    VP    + 
Sbjct: 131 ATELGYGAMRFSGTWDAVLAECVDR--PLEQLDPAVLDALRLGTHQLLAMR-VPDHAALD 187

Query: 129 EYVCIAHDFFYGDEPKFINAVLDKVSRKEEIK 160
             V +            +NAVL KV+R+ + +
Sbjct: 188 ATVGLVRGEIGQGPAGLVNAVLRKVARRSQEE 219


>gi|152977800|ref|YP_001343429.1| sun protein [Actinobacillus succinogenes 130Z]
 gi|150839523|gb|ABR73494.1| sun protein [Actinobacillus succinogenes 130Z]
          Length = 462

 Score = 54.3 bits (130), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 27/139 (19%), Positives = 53/139 (38%), Gaps = 16/139 (11%)

Query: 20  RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79
           R AA Q + Q+   G S + +I E              +      DL   + I  G+   
Sbjct: 29  RAAAAQIILQVLDQGKSLSALIPE-------------TQLKLKPQDLPLLQEICFGICRV 75

Query: 80  KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139
              ++ +I   + +         I+  +L  G+ +++    +P    I+E V  A +   
Sbjct: 76  LPRLEWIIRLLMDK--PLKGKTRIVHCLLLVGLYQILYTR-IPQHAAINETVNAAKELKS 132

Query: 140 GDEPKFINAVLDKVSRKEE 158
            +    +N VL +  R++E
Sbjct: 133 DNFRGLLNGVLRRFLREQE 151


>gi|306821088|ref|ZP_07454704.1| sun family protein [Eubacterium yurii subsp. margaretiae ATCC
           43715]
 gi|304550781|gb|EFM38756.1| sun family protein [Eubacterium yurii subsp. margaretiae ATCC
           43715]
          Length = 436

 Score = 54.3 bits (130), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 24/102 (23%), Positives = 41/102 (40%), Gaps = 3/102 (2%)

Query: 53  TELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGV 112
            E+  +S     +  +   + +GV+     +D  I        SFS++      IL   +
Sbjct: 26  NEVFTKSKLKDEEKNFITYLSYGVLGNIYFLDYFIRKY--SDISFSKISNKAKVILEMAL 83

Query: 113 LELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVS 154
            ELI  +S      ++E V +           F+NAVL K+S
Sbjct: 84  FELIFMNSSQNYATVNESVALCKK-VDFRAKNFVNAVLRKIS 124


>gi|294138832|ref|YP_003554810.1| ribosomal RNA small subunit methyltransferase B [Shewanella
           violacea DSS12]
 gi|293325301|dbj|BAJ00032.1| ribosomal RNA small subunit methyltransferase B [Shewanella
           violacea DSS12]
          Length = 425

 Score = 54.3 bits (130), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 27/139 (19%), Positives = 52/139 (37%), Gaps = 15/139 (10%)

Query: 20  RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79
           R  A +  +Q+   G S +  + + + +            +    D      + +GVM  
Sbjct: 4   RALAAKVAFQVLEKGISLSVALPDQQKH------------LESGKDKALLAELSYGVMRH 51

Query: 80  KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139
              +D L+S C+++         I+  +L  G  +L     +P    ISE         +
Sbjct: 52  LPQLDKLVSDCMSK--PLKGKQRIVHQLLLIGCYQL-YFTRIPSHAAISETAEACRQLKF 108

Query: 140 GDEPKFINAVLDKVSRKEE 158
               K +N VL  + R+E+
Sbjct: 109 EGLVKVVNGVLRNIQRQEK 127


>gi|146278958|ref|YP_001169117.1| Fmu (Sun) domain-containing protein [Rhodobacter sphaeroides ATCC
           17025]
 gi|145557199|gb|ABP71812.1| Fmu (Sun) domain protein [Rhodobacter sphaeroides ATCC 17025]
          Length = 422

 Score = 54.3 bits (130), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 24/152 (15%), Positives = 47/152 (30%), Gaps = 27/152 (17%)

Query: 12  LSHRRGIARLAAVQALYQIDIIGCSTTEI-------ISEYETYRFCADTELDVESVYLHV 64
           + +RR  A           +  G    E        +      R      +         
Sbjct: 1   MIYRRRAA-----------EQGGGMADEARGMAVALLDAVLGERRLLSQAVGELPSAGPA 49

Query: 65  DLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVE 124
           +    + +    +      D L+S  L +          + +ILR  V+E+    + P  
Sbjct: 50  ERARAQRLALTALRHLDPADRLLSPHLRKAPPL-----TVRNILRLAVVEMAVEGAAPHG 104

Query: 125 VIISEYVCIAHDFFYGDEP--KFINAVLDKVS 154
           V+ +  V +A       +     +NAVL K++
Sbjct: 105 VV-NAAVDLARR-GRRTQHLAGLVNAVLRKIA 134


>gi|297198310|ref|ZP_06915707.1| ribosomal RNA small subunit methyltransferase B [Streptomyces
           sviceus ATCC 29083]
 gi|297147058|gb|EDY59597.2| ribosomal RNA small subunit methyltransferase B [Streptomyces
           sviceus ATCC 29083]
          Length = 399

 Score = 54.3 bits (130), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 20/81 (24%), Positives = 37/81 (45%), Gaps = 3/81 (3%)

Query: 77  MDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHD 136
           M R+   D +I+ C+        +D  +  +L  G  +L+    +P    +S  V +A  
Sbjct: 1   MRRQGTYDAIIAECVDR--PLREVDPPVLDVLSLGAHQLLGTR-IPTHAAVSASVELARV 57

Query: 137 FFYGDEPKFINAVLDKVSRKE 157
                  KF+NAVL K+++ +
Sbjct: 58  VLGDGRAKFVNAVLRKIAQDD 78


>gi|326793335|ref|YP_004311155.1| sun protein [Marinomonas mediterranea MMB-1]
 gi|326544099|gb|ADZ89319.1| sun protein [Marinomonas mediterranea MMB-1]
          Length = 452

 Score = 54.3 bits (130), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 32/139 (23%), Positives = 49/139 (35%), Gaps = 18/139 (12%)

Query: 19  ARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDL-EWFRVIIHGVM 77
           AR AAV              E+I++    +    T+L      +  D     +    GV 
Sbjct: 13  AREAAV--------------EVITQVLLQQGSLSTQLSKIQGKVDFDHHALLKEFCFGVC 58

Query: 78  DRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDF 137
                ++ +  S L +   F   D  + S L  G+ +L    S P    I+E V +    
Sbjct: 59  RHFPTLNSIALSLLAK--PFEERDYDVYSTLLLGLYQLQHM-STPDHAAINESVELCRTL 115

Query: 138 FYGDEPKFINAVLDKVSRK 156
                 K INAVL +  R 
Sbjct: 116 KKDWATKLINAVLRRYQRD 134


>gi|227503566|ref|ZP_03933615.1| possible rRNA SAM-dependent methyltransferase RmsB [Corynebacterium
           accolens ATCC 49725]
 gi|227075602|gb|EEI13565.1| possible rRNA SAM-dependent methyltransferase RmsB [Corynebacterium
           accolens ATCC 49725]
          Length = 484

 Score = 54.3 bits (130), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 26/162 (16%), Positives = 55/162 (33%), Gaps = 16/162 (9%)

Query: 3   IQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYL 62
            + N+ D     +   A    VQA   ID  G      ++ ++  R  ++ +     V  
Sbjct: 12  NRGNRGDRNAGTKNTGAGKTLVQA--AIDQ-GVDPARAVA-FDVVRRVSEEDAFANLVLP 67

Query: 63  HV---------DLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVL 113
                      D  +   I +G +     +D +I+ C + +     +  ++   LR G  
Sbjct: 68  KALRKQKLTGRDAAFATEITYGTLRTLGVLDAVIAQCSSRE--LEAISPVVIDALRLGTY 125

Query: 114 ELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSR 155
           +++     P    +   V +           F N +L  ++R
Sbjct: 126 QVLYTRVEPHA-AVDTSVRLVVAGGEEKAKGFANGILRTITR 166


>gi|33866211|ref|NP_897770.1| Sun protein (Fmu protein) [Synechococcus sp. WH 8102]
 gi|33639186|emb|CAE08194.1| Sun protein (Fmu protein) [Synechococcus sp. WH 8102]
          Length = 441

 Score = 54.0 bits (129), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 17/109 (15%), Positives = 36/109 (33%), Gaps = 12/109 (11%)

Query: 58  ESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLD-----MILCSILRAGV 112
           E      D      + +G + R++ +D  +           R+        L  +L  G+
Sbjct: 38  EHPLAGADRGLATELAYGAIRRRRPLDAWLDR-------LGRIPASKQPPKLRWLLHVGL 90

Query: 113 LELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKR 161
            +L+    +P    ++  V +A           +N +L    R  E  +
Sbjct: 91  YQLLWMERIPASAAVNTTVDLAKAVGLARLAPVVNGMLRSALRARESGQ 139


>gi|327400017|ref|YP_004340856.1| Fmu (Sun) domain-containing protein [Archaeoglobus veneficus SNP6]
 gi|327315525|gb|AEA46141.1| Fmu (Sun) domain protein [Archaeoglobus veneficus SNP6]
          Length = 440

 Score = 54.0 bits (129), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 26/128 (20%), Positives = 44/128 (34%), Gaps = 9/128 (7%)

Query: 33  IGCSTTEIISEYETYRFCADTELDVESVYLHVDLEW-----FRVIIHGVMDRKQHIDLLI 87
                 EI+   +     A   L  ++     D ++         +   + R+  ID LI
Sbjct: 4   TQEIAVEILERIDEEIISAKEAL--KAGLAGKDFDYKVRGSIHAYVMETLKRRNTIDFLI 61

Query: 88  SSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFIN 147
              L  K +   L   L ++LR  V E+     V   +     V IA     G     +N
Sbjct: 62  DRSLDGK-TVYELKPFLRNLLRVAVYEMFY-KGVHPALATDSAVRIAKRRIGGRAAALVN 119

Query: 148 AVLDKVSR 155
           AV+ +  +
Sbjct: 120 AVMRRAEK 127


>gi|116670233|ref|YP_831166.1| Fmu (Sun) domain-containing protein [Arthrobacter sp. FB24]
 gi|116610342|gb|ABK03066.1| Fmu (Sun) domain protein [Arthrobacter sp. FB24]
          Length = 539

 Score = 54.0 bits (129), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 33/155 (21%), Positives = 56/155 (36%), Gaps = 17/155 (10%)

Query: 3   IQDNKKDLKLSHR-RGI--ARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVES 59
            + N  +   S R R    ARL A + L        ++ +  +            LD   
Sbjct: 50  PKRNFSENAPSQRTRRADPARLVAFEVL-----RAVASEDAYANLVLPARIRHHGLD--- 101

Query: 60  VYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECH 119
                D  +   + +G +  +   D +++ C+       +LD  +   LR G  +L+   
Sbjct: 102 ---KRDAGFATELSYGALRGQGTYDAVLARCVDR--PLDQLDPAILDALRIGAHQLLAMR 156

Query: 120 SVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVS 154
            VP    + + V +A           INAVL KVS
Sbjct: 157 -VPAHAALDQTVGLARAVIGAGPSALINAVLRKVS 190


>gi|213965561|ref|ZP_03393755.1| Fmu protein [Corynebacterium amycolatum SK46]
 gi|213951720|gb|EEB63108.1| Fmu protein [Corynebacterium amycolatum SK46]
          Length = 485

 Score = 54.0 bits (129), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 27/142 (19%), Positives = 52/142 (36%), Gaps = 16/142 (11%)

Query: 20  RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79
           R  A++ L             + E + Y      +L         D  +   + +G +  
Sbjct: 45  RKVALKVL-----------ADVRENDAYANLLLPKLLKAHKLKGRDAAFATELTYGTLRA 93

Query: 80  KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV-CIAHDFF 138
           +  +D +I +  +     S +   +  +LR G  +L+    V     +   V  +A    
Sbjct: 94  EGLLDAVIEASSSR--PLSDIAGPVMDVLRLGTYQLL-RTRVDAYAAVDTSVRSVAKVAG 150

Query: 139 YGDEPKFINAVLDKVSRKEEIK 160
            G    F+NA+L KVS + E +
Sbjct: 151 PG-ARGFVNAILRKVSSQTESE 171


>gi|329946677|ref|ZP_08294089.1| putative ribosomal RNA small subunit methyltransferase B
           [Actinomyces sp. oral taxon 170 str. F0386]
 gi|328526488|gb|EGF53501.1| putative ribosomal RNA small subunit methyltransferase B
           [Actinomyces sp. oral taxon 170 str. F0386]
          Length = 463

 Score = 54.0 bits (129), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 24/102 (23%), Positives = 44/102 (43%), Gaps = 3/102 (2%)

Query: 53  TELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGV 112
            EL   +     D  +   + +G +  +   D +ISSC     +  R+D  +  +LR G 
Sbjct: 21  PELLDSADLDRRDAGFTTALTYGTLRLQGRYDAMISSCTDR--TLERIDPTVLDVLRLGC 78

Query: 113 LELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVS 154
            +L+    V     +S  V +A D        F+NA++ ++S
Sbjct: 79  HQLMGMR-VAQHAAVSTTVDLAADSCGRGAATFVNAIMRRLS 119


>gi|229820540|ref|YP_002882066.1| Fmu (Sun) domain protein [Beutenbergia cavernae DSM 12333]
 gi|229566453|gb|ACQ80304.1| Fmu (Sun) domain protein [Beutenbergia cavernae DSM 12333]
          Length = 480

 Score = 54.0 bits (129), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 25/122 (20%), Positives = 43/122 (35%), Gaps = 3/122 (2%)

Query: 36  STTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKW 95
                +   + Y       L  E      D  +   + +G +  +   D +++   T   
Sbjct: 30  DVLRAVERDDAYANLVLPALLAERGLSGRDAAFATELAYGTLRMRGRYDAILAIASTR-- 87

Query: 96  SFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSR 155
               LD  L  +LR G  +L+    V     +SE V +A +        + NAVL  + R
Sbjct: 88  PPQELDPPLLDVLRLGAHQLLGMR-VAAHAAVSETVTLAREVVGAGASSYANAVLRAIGR 146

Query: 156 KE 157
            E
Sbjct: 147 AE 148


>gi|309776537|ref|ZP_07671518.1| ribosomal RNA small subunit methyltransferase B
           [Erysipelotrichaceae bacterium 3_1_53]
 gi|308915714|gb|EFP61473.1| ribosomal RNA small subunit methyltransferase B
           [Erysipelotrichaceae bacterium 3_1_53]
          Length = 415

 Score = 54.0 bits (129), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 25/143 (17%), Positives = 49/143 (34%), Gaps = 11/143 (7%)

Query: 30  IDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISS 89
           ++  G +   +   +    +         +     D      I++G +   +     +  
Sbjct: 1   MNARGIAFDMLKDIFLHKTYSNLLLRKGLNQAKAQDKGLITQIVYGTLQNYR-----LCR 55

Query: 90  CLTEKWS--FSRLDMILCSI-LRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFI 146
               +W     +L      I L   V +L+    +P   II++ V I     +    K +
Sbjct: 56  Y---QWMDCVKKLPSDEVCIVLDMSVYQLLYMDKLPAYAIINDAVDITKKQIHVKMAKLV 112

Query: 147 NAVLDKVSRKEEIKRSGCVSAIT 169
           NAVL  V R+ E + +G    I 
Sbjct: 113 NAVLHAVERRGEREVTGKQEEIL 135


>gi|260426788|ref|ZP_05780767.1| Fmu [Citreicella sp. SE45]
 gi|260421280|gb|EEX14531.1| Fmu [Citreicella sp. SE45]
          Length = 420

 Score = 54.0 bits (129), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 26/142 (18%), Positives = 48/142 (33%), Gaps = 24/142 (16%)

Query: 18  IARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVM 77
            AR  AVQ L Q+   G   +E +S                      +    + +   V+
Sbjct: 6   TARGQAVQLLGQVLGQGRLLSEAMS------------GGAWDSLAPAERAAAQRLAQEVL 53

Query: 78  DRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDF 137
              +  D ++   L +          + ++LR G  EL  C       +++E V +    
Sbjct: 54  RNLERCDRVLKPHLRKAPPL-----FVKNVLRLGAWEL--CTGGAAHGVVNEAVQLVGA- 105

Query: 138 FYGDEP---KFINAVLDKVSRK 156
                      +NAVL K++ +
Sbjct: 106 -DRKAHSMKGMVNAVLRKLAAE 126


>gi|312797048|ref|YP_004029970.1| N utilization substance protein B [Burkholderia rhizoxinica HKI
          454]
 gi|312168823|emb|CBW75826.1| N utilization substance protein B [Burkholderia rhizoxinica HKI
          454]
          Length = 112

 Score = 53.6 bits (128), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 15/71 (21%), Positives = 27/71 (38%), Gaps = 11/71 (15%)

Query: 21 LAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRK 80
            A Q LYQ  + G +  EI           D  +  +  +   D + F  ++HGV+ + 
Sbjct: 12 ELATQGLYQWLLSGAAPGEI-----------DAAMREQPGFDKADRDHFDALLHGVIKQA 60

Query: 81 QHIDLLISSCL 91
            +   +   L
Sbjct: 61 ATLTEALMPFL 71


>gi|257080479|ref|ZP_05574840.1| ribosomal RNA small subunit methyltransferase [Enterococcus
           faecalis E1Sol]
 gi|256988509|gb|EEU75811.1| ribosomal RNA small subunit methyltransferase [Enterococcus
           faecalis E1Sol]
          Length = 459

 Score = 53.6 bits (128), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 22/104 (21%), Positives = 45/104 (43%), Gaps = 3/104 (2%)

Query: 53  TELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGV 112
            E+  +S     D   F  +++G + RK  ++  ++  + +     ++D  + ++L   +
Sbjct: 36  NEMMTKSELSEKDGRLFTELVYGTISRKLLLEYYLTPFVKK---PQKIDNWVKNLLILSL 92

Query: 113 LELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRK 156
            +L+    VP   +I+E V I          KF+N VL    R 
Sbjct: 93  YQLLYLDKVPDHAVINEAVEIGKRRGNPGIGKFVNGVLRAFQRN 136


>gi|163751682|ref|ZP_02158901.1| sun protein [Shewanella benthica KT99]
 gi|161328421|gb|EDP99577.1| sun protein [Shewanella benthica KT99]
          Length = 425

 Score = 53.6 bits (128), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 29/143 (20%), Positives = 52/143 (36%), Gaps = 19/143 (13%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           R +A   A Q L      G S +  + + + +            +    D      + +G
Sbjct: 4   RALAARVAFQVL----EKGTSLSVALPDQQQH------------LESGKDKALLAELSYG 47

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
           VM     +D L+S C+++         I+  +L  G  +L     +P    ISE      
Sbjct: 48  VMRHLPQLDKLVSDCMSK--PLKGKQRIVHQLLLIGCYQL-YFTRIPSHAAISETAEACR 104

Query: 136 DFFYGDEPKFINAVLDKVSRKEE 158
              +    K +N VL  + R+E+
Sbjct: 105 QLKFEGLVKVVNGVLRNIQRQEK 127


>gi|126695788|ref|YP_001090674.1| Sun protein (Fmu protein) [Prochlorococcus marinus str. MIT 9301]
 gi|126542831|gb|ABO17073.1| Sun protein (Fmu protein) [Prochlorococcus marinus str. MIT 9301]
          Length = 438

 Score = 53.6 bits (128), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 23/100 (23%), Positives = 43/100 (43%), Gaps = 2/100 (2%)

Query: 61  YLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHS 120
           +  +D+ +   +  G +  ++ +DL      T K +  +    L  +L  G+ +L++   
Sbjct: 37  FNPLDIAFITELSFGCIRYRKFLDLWTDH--TSKITHKKQPPKLRWLLHIGLYQLLKMDK 94

Query: 121 VPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIK 160
           +P    IS  V +A           +NA+L   SRK E K
Sbjct: 95  IPFPAAISTTVEVAKKTDLNGLAGTVNAILRNASRKLEQK 134


>gi|78778810|ref|YP_396922.1| sun protein [Prochlorococcus marinus str. MIT 9312]
 gi|78712309|gb|ABB49486.1| sun protein [Prochlorococcus marinus str. MIT 9312]
          Length = 438

 Score = 53.6 bits (128), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 23/100 (23%), Positives = 43/100 (43%), Gaps = 2/100 (2%)

Query: 61  YLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHS 120
           +  +D+ +   +  G +  ++ +DL      T K +  +    L  +L  G+ +L++   
Sbjct: 37  FNPLDIAFITELSFGCIRYRKFLDLWTDH--TSKITHKKQPPKLRWLLHIGLYQLLKMDK 94

Query: 121 VPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIK 160
           +P    IS  V +A           +NA+L   SRK E K
Sbjct: 95  IPFPAAISTTVEVAKKTDLNGLAGTVNAILRNASRKLEQK 134


>gi|306836175|ref|ZP_07469159.1| exopolyphosphatase [Corynebacterium accolens ATCC 49726]
 gi|304567896|gb|EFM43477.1| exopolyphosphatase [Corynebacterium accolens ATCC 49726]
          Length = 484

 Score = 53.6 bits (128), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 17/115 (14%), Positives = 41/115 (35%), Gaps = 3/115 (2%)

Query: 41  ISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRL 100
           +SE + +      +   +      D  +   I +G +     +D +I+ C + +     +
Sbjct: 55  VSEEDAFANLVLPKALRKQKLSGRDAAFATEITYGTLRTLGVLDAVIAQCSSRE--LEAI 112

Query: 101 DMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSR 155
             ++   LR G  +++     P    +   V +           F N +L  ++R
Sbjct: 113 SPVVIDALRLGTYQVLYTRVEPHA-AVDTSVRLVVAGGEEKAKGFANGILRTITR 166


>gi|256958399|ref|ZP_05562570.1| fmu family protein [Enterococcus faecalis DS5]
 gi|257078290|ref|ZP_05572651.1| fmu [Enterococcus faecalis JH1]
 gi|294779981|ref|ZP_06745361.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
           faecalis PC1.1]
 gi|307270563|ref|ZP_07551861.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
           faecalis TX4248]
 gi|256948895|gb|EEU65527.1| fmu family protein [Enterococcus faecalis DS5]
 gi|256986320|gb|EEU73622.1| fmu [Enterococcus faecalis JH1]
 gi|294452962|gb|EFG21384.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
           faecalis PC1.1]
 gi|306513144|gb|EFM81778.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
           faecalis TX4248]
 gi|315034823|gb|EFT46755.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
           faecalis TX0027]
          Length = 459

 Score = 53.6 bits (128), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 22/104 (21%), Positives = 45/104 (43%), Gaps = 3/104 (2%)

Query: 53  TELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGV 112
            E+  +S     D   F  +++G + RK  ++  ++  + +     ++D  + ++L   +
Sbjct: 36  NEMMTKSELSEKDGRLFTELVYGTISRKLLLEYYLTPFVKK---PQKVDNWVRNLLILSL 92

Query: 113 LELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRK 156
            +L+    VP   +I+E V I          KF+N VL    R 
Sbjct: 93  YQLLYLDKVPDHAVINEAVEIGKRRGNPGIGKFVNGVLRAFQRN 136


>gi|257417249|ref|ZP_05594243.1| fmu family protein [Enterococcus faecalis AR01/DG]
 gi|307292139|ref|ZP_07572005.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
           faecalis TX0411]
 gi|257159077|gb|EEU89037.1| fmu family protein [Enterococcus faecalis ARO1/DG]
 gi|306496792|gb|EFM66343.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
           faecalis TX0411]
 gi|315146584|gb|EFT90600.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
           faecalis TX4244]
          Length = 459

 Score = 53.6 bits (128), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 22/104 (21%), Positives = 45/104 (43%), Gaps = 3/104 (2%)

Query: 53  TELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGV 112
            E+  +S     D   F  +++G + RK  ++  ++  + +     ++D  + ++L   +
Sbjct: 36  NEMMTKSELSEKDGRLFTELVYGTISRKLLLEYYLTPFVKK---PQKVDNWVRNLLILSL 92

Query: 113 LELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRK 156
            +L+    VP   +I+E V I          KF+N VL    R 
Sbjct: 93  YQLLYLDKVPDHAVINEAVEIGKRRGNPGIGKFVNGVLRAFQRN 136


>gi|325108338|ref|YP_004269406.1| Fmu (Sun) domain protein [Planctomyces brasiliensis DSM 5305]
 gi|324968606|gb|ADY59384.1| Fmu (Sun) domain protein [Planctomyces brasiliensis DSM 5305]
          Length = 495

 Score = 53.6 bits (128), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 22/89 (24%), Positives = 37/89 (41%), Gaps = 2/89 (2%)

Query: 79  RKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFF 138
           R++ ID ++   ++       +   L ++LR G  EL+          ISE V +A    
Sbjct: 71  RQRTIDRVLREAVSRAR--ENVQNELWTLLRMGAAELLFGPRDAQYAAISETVELARWVG 128

Query: 139 YGDEPKFINAVLDKVSRKEEIKRSGCVSA 167
           + +   F+N VL  V R    + S  V  
Sbjct: 129 HSEWTGFLNGVLRGVQRMLSEEESDTVGK 157


>gi|313898375|ref|ZP_07831912.1| ribosomal RNA small subunit methyltransferase B [Clostridium sp.
           HGF2]
 gi|312956757|gb|EFR38388.1| ribosomal RNA small subunit methyltransferase B [Clostridium sp.
           HGF2]
          Length = 415

 Score = 53.6 bits (128), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 22/103 (21%), Positives = 41/103 (39%), Gaps = 11/103 (10%)

Query: 65  DLEWFRVIIHGVMDRKQHIDLLISSCLTEKWS--FSRLDMILCSILR-AGVLELIECHSV 121
           D      I++G +   +     +      +W     +L      +L    V +L     +
Sbjct: 36  DKGLITQIVYGTLQNYR-----LCRY---QWEDCVKKLPSDEVCVLLDMSVYQLFYMDKL 87

Query: 122 PVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRSGC 164
           P   II++ V I     +G+  K +NAVL  V R+ + + +G 
Sbjct: 88  PAYAIINDAVEITKKQIHGNMAKLVNAVLHAVQRRGKREITGK 130


>gi|83950714|ref|ZP_00959447.1| ribosomal RNA small subunit methyltransferase B, putative
           [Roseovarius nubinhibens ISM]
 gi|83838613|gb|EAP77909.1| ribosomal RNA small subunit methyltransferase B, putative
           [Roseovarius nubinhibens ISM]
          Length = 410

 Score = 53.6 bits (128), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 23/107 (21%), Positives = 40/107 (37%), Gaps = 14/107 (13%)

Query: 59  SVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIEC 118
                 D    + +    +   +  D LIS  + +K         + +ILR   +EL   
Sbjct: 22  DRLDPADRARAQRLTTQTLRAMERADRLISRHVKKKPPL-----TIRNILRLATVELAYG 76

Query: 119 HSVPVEVIISEYVCIAHDFFYGDEPKF---INAVLDKVSRKEEIKRS 162
                  ++ E V +A +        +   +NAVL K++  EE  RS
Sbjct: 77  GDAHG--VVGEAVTLAGE--GQRSQNYKGLVNAVLRKIA--EEAPRS 117


>gi|256379230|ref|YP_003102890.1| Fmu (Sun) domain protein [Actinosynnema mirum DSM 43827]
 gi|255923533|gb|ACU39044.1| Fmu (Sun) domain protein [Actinosynnema mirum DSM 43827]
          Length = 478

 Score = 53.6 bits (128), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 27/141 (19%), Positives = 52/141 (36%), Gaps = 14/141 (9%)

Query: 19  ARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMD 78
           AR AA+  L             +++ + Y       L  E      D      + +G   
Sbjct: 37  ARRAALDTL-----------RAVTKRDAYANLVLPGLLRERRITGRDAALATELTYGTAR 85

Query: 79  RKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFF 138
            +  +D ++++C       + +D  +   LR G  +L+    VP    ++  V +     
Sbjct: 86  ARGLLDAVLAACSDR--PLAEIDDAVLDALRLGAYQLL-RTRVPAHAAVASTVDLVRADR 142

Query: 139 YGDEPKFINAVLDKVSRKEEI 159
                 F NAVL +V+ ++E 
Sbjct: 143 GSGAAGFANAVLRRVTGQDEA 163


>gi|260434429|ref|ZP_05788399.1| ribosomal RNA small subunit methyltransferase B [Synechococcus sp.
           WH 8109]
 gi|260412303|gb|EEX05599.1| ribosomal RNA small subunit methyltransferase B [Synechococcus sp.
           WH 8109]
          Length = 445

 Score = 53.6 bits (128), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 23/152 (15%), Positives = 46/152 (30%), Gaps = 31/152 (20%)

Query: 20  RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79
           R  A       D++        ++    R     +L         D      + +G + +
Sbjct: 15  RRLA------WDVLQAVAAGAYADVALERVLRMQDLKPS------DRGLVTELAYGAIRQ 62

Query: 80  KQHIDLLISSCLTEKWSFSRLDMI--------LCSILRAGVLELIECHSVPVEVIISEYV 131
           ++ +D          W   RL  +        L  +L  G+ +L+    +P    ++  V
Sbjct: 63  RRTLDA---------W-LDRLGKVPAAKQPPKLRWLLHVGLYQLLLMERIPDSAAVNTAV 112

Query: 132 CIAHDF-FYGDEPKFINAVLDKVSRKEEIKRS 162
            +A            +N VL    R  E   +
Sbjct: 113 ELAKTSKGLARLAPVVNGVLRAALRAREAGET 144


>gi|261416620|ref|YP_003250303.1| Fmu (Sun) domain protein [Fibrobacter succinogenes subsp.
           succinogenes S85]
 gi|261373076|gb|ACX75821.1| Fmu (Sun) domain protein [Fibrobacter succinogenes subsp.
           succinogenes S85]
 gi|302326268|gb|ADL25469.1| ribosomal RNA small subunit methyltransferase B [Fibrobacter
           succinogenes subsp. succinogenes S85]
          Length = 419

 Score = 53.6 bits (128), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 25/116 (21%), Positives = 44/116 (37%), Gaps = 9/116 (7%)

Query: 45  ETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMIL 104
           E +R     + D   +       +   +  GV  R  ++       LT+K     L  + 
Sbjct: 7   EAFRVLLLWQRDGSFIKESGLSPFAMELALGVCRRHLYL-EYFVKSLTKK-----LPSLE 60

Query: 105 -CSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDE-PKFINAVLDKVSRKEE 158
              IL  G+ ++     VP    I++ V +A     G+   + +NAVL    R+ E
Sbjct: 61  ARVILEMGLFQMFFM-DVPDYAAINDSVELAKSANLGESTARLVNAVLRTARRQGE 115


>gi|78484536|ref|YP_390461.1| sun protein [Thiomicrospira crunogena XCL-2]
 gi|78362822|gb|ABB40787.1| Ribosomal RNA small subunit methyltransferase B [Thiomicrospira
           crunogena XCL-2]
          Length = 436

 Score = 53.2 bits (127), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 16/94 (17%), Positives = 37/94 (39%), Gaps = 3/94 (3%)

Query: 65  DLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVE 124
           +  + + ++ G +  ++ +   I S L +K      D  +  ++  G+ +++     P  
Sbjct: 39  ERAFTQNLVLGTLRWQERL-EAIRSHLLKK-PLKAKDEDVNQLILLGLYQILYM-DTPEH 95

Query: 125 VIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEE 158
             +SE V +            IN VL    R ++
Sbjct: 96  AAVSETVNLTKSLKKPWARGLINGVLRTFLRDKD 129


>gi|254526482|ref|ZP_05138534.1| ribosomal RNA small subunit methyltransferase B [Prochlorococcus
           marinus str. MIT 9202]
 gi|221537906|gb|EEE40359.1| ribosomal RNA small subunit methyltransferase B [Prochlorococcus
           marinus str. MIT 9202]
          Length = 438

 Score = 53.2 bits (127), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 23/100 (23%), Positives = 43/100 (43%), Gaps = 2/100 (2%)

Query: 61  YLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHS 120
           +  +D+ +   +  G +  ++ +DL      T K +  +    L  +L  G+ +L++   
Sbjct: 37  FNPLDIAFITELSFGCIRYRKFLDLWTDH--TSKITHKKQPPKLRWLLHIGLYQLLKMDK 94

Query: 121 VPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIK 160
           +P    IS  V +A           +NA+L   SRK E K
Sbjct: 95  IPFSAAISTTVEVAKKTDLNGLAGTVNAILRNASRKLEQK 134


>gi|212632964|ref|YP_002309489.1| Fmu, rRNA SAM-dependent methyltransferase [Shewanella piezotolerans
           WP3]
 gi|212554448|gb|ACJ26902.1| Fmu, rRNA SAM-dependent methyltransferase [Shewanella piezotolerans
           WP3]
          Length = 428

 Score = 53.2 bits (127), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 25/139 (17%), Positives = 52/139 (37%), Gaps = 15/139 (10%)

Query: 20  RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79
           R  A + ++Q+   G S +  + + + +            +    D      + +GVM  
Sbjct: 6   RALAAKVVFQVLEKGISLSVALPDQQKH------------LDSGKDKALLAELCYGVMRH 53

Query: 80  KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139
              +D  +S C+++         I+  +L  G  ++     +P    ISE         +
Sbjct: 54  LPQLDKQVSDCMSK--PLKGKQRIVHQLLLIGCYQI-YFTRIPSHAAISETAEACRQLKF 110

Query: 140 GDEPKFINAVLDKVSRKEE 158
               K +N VL  + R+E+
Sbjct: 111 EGLVKVVNGVLRTIQRQEK 129


>gi|194476557|ref|YP_002048736.1| Sun protein (Fmu protein) [Paulinella chromatophora]
 gi|171191564|gb|ACB42526.1| Sun protein (Fmu protein) [Paulinella chromatophora]
          Length = 451

 Score = 53.2 bits (127), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 20/103 (19%), Positives = 41/103 (39%), Gaps = 2/103 (1%)

Query: 60  VYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECH 119
               VD      I +G + R+  +D  +S  L +  +  +   +L  +L  G+ +L+   
Sbjct: 52  PLPPVDRGLATEIAYGSIRRRLTLDTYLS-HLGKVLANKQ-PPLLRWLLHVGLYQLLFVE 109

Query: 120 SVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRS 162
            VP    I+  V +A           +N +L    R ++  ++
Sbjct: 110 RVPSAAAINTTVELAKKSSLATLAPVVNGILRTAHRFQQSGKA 152


>gi|256843396|ref|ZP_05548884.1| ribosomal small subunit methyltransferase B [Lactobacillus
           crispatus 125-2-CHN]
 gi|256614816|gb|EEU20017.1| ribosomal small subunit methyltransferase B [Lactobacillus
           crispatus 125-2-CHN]
          Length = 453

 Score = 53.2 bits (127), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 19/99 (19%), Positives = 38/99 (38%), Gaps = 14/99 (14%)

Query: 64  VDLEWFRVIIHGVMDRKQ----HIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECH 119
            D      I++G +  +      +  L+ + LTEK+        +  +L   + +LI   
Sbjct: 53  ADQNLATNIVYGTIQYRLFLEYQLKGLVRTKLTEKY--------IKPLLLMSLYQLIFLD 104

Query: 120 SVPVEVIISEYVCIAHDFFYGDEPKF--INAVLDKVSRK 156
            VP   ++ E   +A  +       F   N +L   +R+
Sbjct: 105 KVPDRAVLDEANKLAKQYGKRHSAGFRLANGILRSFTRR 143


>gi|319937497|ref|ZP_08011902.1| SUN protein [Coprobacillus sp. 29_1]
 gi|319807337|gb|EFW03946.1| SUN protein [Coprobacillus sp. 29_1]
          Length = 416

 Score = 53.2 bits (127), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 17/87 (19%), Positives = 38/87 (43%), Gaps = 5/87 (5%)

Query: 66  LEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEV 125
            ++   +++G +    +++ L+   L      +R+      +L   + +     S+P   
Sbjct: 38  KDFITRVVYGTVQNMLYLEYLLEPHLK-----TRVKAYEKMLLLMSLYQHEFMDSIPDYA 92

Query: 126 IISEYVCIAHDFFYGDEPKFINAVLDK 152
           I++E V +A         +FINAVL+ 
Sbjct: 93  IVNEAVRLAKKKKGTKTAQFINAVLNH 119


>gi|283852902|ref|ZP_06370163.1| NusB/RsmB/TIM44 [Desulfovibrio sp. FW1012B]
 gi|283571731|gb|EFC19730.1| NusB/RsmB/TIM44 [Desulfovibrio sp. FW1012B]
          Length = 451

 Score = 53.2 bits (127), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 21/103 (20%), Positives = 37/103 (35%), Gaps = 3/103 (2%)

Query: 52  DTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAG 111
           DT L         D      +++G +     ID ++S  L +      + + +  +L   
Sbjct: 46  DTALAGTKGLDPRDRGLATELVYGYLRLCGRIDWMLSRFLKK---PEAVPLPVRRVLGLA 102

Query: 112 VLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVS 154
           V E++ C  VP    +   V               NAVL +V+
Sbjct: 103 VYEILYCSRVPAYASVDWAVSAVRRLSGKGLGGMANAVLRRVA 145


>gi|157412841|ref|YP_001483707.1| Sun protein [Prochlorococcus marinus str. MIT 9215]
 gi|157387416|gb|ABV50121.1| Sun protein (Fmu protein) [Prochlorococcus marinus str. MIT 9215]
          Length = 438

 Score = 53.2 bits (127), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 23/100 (23%), Positives = 43/100 (43%), Gaps = 2/100 (2%)

Query: 61  YLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHS 120
           +  +D+ +   +  G +  ++ +DL      T K +  +    L  +L  G+ +L++   
Sbjct: 37  FNSLDIAFITELSFGCIRYRKFLDLWTDH--TSKITHKKQPPKLRWLLHIGLYQLLKMDK 94

Query: 121 VPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIK 160
           +P    IS  V +A           +NA+L   SRK E K
Sbjct: 95  IPFPAAISTTVEVAKKTDLNGLAGTVNAILRNASRKLEQK 134


>gi|167621966|ref|YP_001672260.1| sun protein [Shewanella halifaxensis HAW-EB4]
 gi|167351988|gb|ABZ74601.1| sun protein [Shewanella halifaxensis HAW-EB4]
          Length = 426

 Score = 53.2 bits (127), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 26/139 (18%), Positives = 53/139 (38%), Gaps = 15/139 (10%)

Query: 20  RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79
           R  A + ++Q+   G S +  +   + +            +    D      + +GVM  
Sbjct: 4   RALAAKVVFQVLEKGISLSVALPVQQKH------------LDSGKDKALLAELCYGVMRH 51

Query: 80  KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139
              +D  +S C++++    +   I+  +L  G  +L     +P    ISE         +
Sbjct: 52  LPQLDKQVSDCMSKQMKGKQ--RIVHQLLLVGCYQL-YFTRIPSHAAISETAEACRQLKF 108

Query: 140 GDEPKFINAVLDKVSRKEE 158
               K +N VL  + R+E+
Sbjct: 109 EGLVKVVNGVLRNIQRQEK 127


>gi|327191218|gb|EGE58261.1| putative RNA methyltransferase - sun protein [Rhizobium etli
           CNPAF512]
          Length = 464

 Score = 52.8 bits (126), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 36/179 (20%), Positives = 60/179 (33%), Gaps = 16/179 (8%)

Query: 1   MTIQDNKKDL---KLSHRRGIARLAAVQ-ALYQIDIIGCSTTEIISEYETYRFCADTEL- 55
           M+    KK     K S  R   RLA V+  L            ++          D E  
Sbjct: 1   MSSDGTKKPFRKQKPSSDRPAGRLAPVKPGLQARAAAAKILAAVVDRKLPLDGALDHEHG 60

Query: 56  -DVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLE 114
                     D    R I++  +     ID  I+S L            L  +L  G  +
Sbjct: 61  NPAYKALGESDRALVRAILNTTLRHLPRIDAAIASLLES--PLPEGARALHHVLSIGAAQ 118

Query: 115 LIECHSVPVEVIISEYVCIAHDFFYGDEPKF---INAVLDKVSRKEE--IKRSGCVSAI 168
           ++    VP    +   V  A+        +F   +NAVL ++ R+++  +   G V+ +
Sbjct: 119 ILY-LDVPDHSAVDLAVEQANQ--DPRNRRFAKLVNAVLRRLGREKDAVLAEIGKVAPM 174


>gi|329576774|gb|EGG58267.1| putative ribosomal RNA small subunit methyltransferase B
           [Enterococcus faecalis TX1467]
          Length = 340

 Score = 52.8 bits (126), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 22/104 (21%), Positives = 45/104 (43%), Gaps = 3/104 (2%)

Query: 53  TELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGV 112
            E+  +S     D   F  +++G + RK  ++  ++  + +     ++D  + ++L   +
Sbjct: 36  NEMMTKSELSEKDGRLFTELVYGTISRKLLLEYYLTPFVKK---PQKVDNWVRNLLILSL 92

Query: 113 LELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRK 156
            +L+    VP   +I+E V I          KF+N VL    R 
Sbjct: 93  YQLLYLDKVPDHAVINEAVEIGKRRGNPGIGKFVNGVLRAFQRN 136


>gi|239917585|ref|YP_002957143.1| ribosomal RNA small subunit methyltransferase RsmB [Micrococcus
           luteus NCTC 2665]
 gi|239838792|gb|ACS30589.1| ribosomal RNA small subunit methyltransferase RsmB [Micrococcus
           luteus NCTC 2665]
          Length = 543

 Score = 52.8 bits (126), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 27/163 (16%), Positives = 55/163 (33%), Gaps = 13/163 (7%)

Query: 4   QDNKKDLKLSHRRG---IARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDV--- 57
           QD +     +  RG    AR  + QA  Q          +           D   ++   
Sbjct: 29  QDRRDAQGRTRNRGRSGAARKYSAQAPSQRSRTADPARRVAFGVVRSVHAEDAYANLVLP 88

Query: 58  ----ESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVL 113
               ++     D  +   + +G +      D +++ C+       ++D  +   LR G  
Sbjct: 89  ARIRQARLDRRDAGFATELAYGTLRGLGLYDAILTRCVDR--PLEKIDPPVLDALRLGAH 146

Query: 114 ELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRK 156
           +L+    VP    +   V +           F+NAVL +++ +
Sbjct: 147 QLLGMR-VPAHAALDATVSLVRAEVGAGASGFVNAVLRRIAER 188


>gi|307943521|ref|ZP_07658865.1| ribosomal RNA small subunit methyltransferase B [Roseibium sp.
           TrichSKD4]
 gi|307773151|gb|EFO32368.1| ribosomal RNA small subunit methyltransferase B [Roseibium sp.
           TrichSKD4]
          Length = 462

 Score = 52.8 bits (126), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 21/130 (16%), Positives = 47/130 (36%), Gaps = 10/130 (7%)

Query: 37  TTEIISEYETYRFCADTELDVESVYL------HVDLEWFRVIIHGVMDRKQHIDLLISSC 90
             +I+          D EL+++S +         D    R I+   +  +  I  +++  
Sbjct: 36  AADILGNVVHKHRPLDGELELKSGHSGFRALEPKDRALVRAILGAALRHRGEISEILTRL 95

Query: 91  LTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPK-FINAV 149
           L       +   +   IL   + +++    +P    +S  V  A         K  +N V
Sbjct: 96  LDRDIP-EKTGRV-LDILHVAIAQMLY-LDIPDRAAVSLAVDHASADSRSRVYKGLVNGV 152

Query: 150 LDKVSRKEEI 159
           L ++ R+ ++
Sbjct: 153 LRRLGRERDM 162


>gi|320527282|ref|ZP_08028467.1| ribosomal RNA small subunit methyltransferase B [Solobacterium
           moorei F0204]
 gi|320132306|gb|EFW24851.1| ribosomal RNA small subunit methyltransferase B [Solobacterium
           moorei F0204]
          Length = 405

 Score = 52.8 bits (126), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 21/92 (22%), Positives = 38/92 (41%), Gaps = 10/92 (10%)

Query: 62  LHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSV 121
              ++     II+G +  K  ++               +   + ++L   V +L+   S+
Sbjct: 31  SKEEMGLASEIIYGTIRNKTLLEEQWRPFTKH------VKPRVVALLNMSVYQLLFLDSI 84

Query: 122 PVEVIISEYVCIAHDFFYGDEPKFINAVLDKV 153
           P   +I E V +A       E +F+NAVL KV
Sbjct: 85  PSYAVIFEAVELA----GKSEKEFVNAVLRKV 112


>gi|197124464|ref|YP_002136415.1| NusB/RsmB/TIM44 [Anaeromyxobacter sp. K]
 gi|196174313|gb|ACG75286.1| NusB/RsmB/TIM44 [Anaeromyxobacter sp. K]
          Length = 455

 Score = 52.8 bits (126), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 21/100 (21%), Positives = 38/100 (38%), Gaps = 3/100 (3%)

Query: 68  WFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVII 127
               +++G + R   +D  ++         + LD      LR G  +L+     P    +
Sbjct: 51  LATELVYGTLRRALALDAALAPHSRR--PLAELDPAARVALRLGAYQLL-VLGTPAHAAV 107

Query: 128 SEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRSGCVSA 167
            E V +A    +G    ++NAVL  +SR         + A
Sbjct: 108 GETVALAKAVDHGRAAGYVNAVLRSLSRAARFPDPPALEA 147


>gi|320334556|ref|YP_004171267.1| NusB/RsmB/TIM44 [Deinococcus maricopensis DSM 21211]
 gi|319755845|gb|ADV67602.1| NusB/RsmB/TIM44 [Deinococcus maricopensis DSM 21211]
          Length = 420

 Score = 52.8 bits (126), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 32/153 (20%), Positives = 52/153 (33%), Gaps = 24/153 (15%)

Query: 1   MTIQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESV 60
           MT    +       R   AR  AV+ L    + G      + E   +           + 
Sbjct: 1   MTDAPTRAP----RRANPARAVAVRVL-ARVLGGAFAAPTLDEALAH-----------AR 44

Query: 61  YLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHS 120
               D      I++G +     +   + + L              ++L AG  E +   +
Sbjct: 45  LPARDAGLATHIVYGALRHAPTLLPALDALLKGSTPIKA-----RALLLAGAFEKLVLGT 99

Query: 121 VPVEVIISEYVCIAHDFFYGDEPKFINAVLDKV 153
            P    +SEYV +A D F    P  +NAVL +V
Sbjct: 100 APHA-AVSEYVTLARDGFA--SPGLVNAVLRRV 129


>gi|113954299|ref|YP_729912.1| sun protein [Synechococcus sp. CC9311]
 gi|113881650|gb|ABI46608.1| sun protein [Synechococcus sp. CC9311]
          Length = 449

 Score = 52.4 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 24/156 (15%), Positives = 49/156 (31%), Gaps = 30/156 (19%)

Query: 19  ARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMD 78
           AR  A++ L   + +       ++     R         ++     D      + +G + 
Sbjct: 17  ARRLALEVL---EAVAAGAYADVALERALR---------QNPLSPADRGLATELAYGCIR 64

Query: 79  RKQHIDLLISSCLTEKWSFSRLDMI--------LCSILRAGVLELIECHSVPVEVIISEY 130
            +Q +D          W   RL  +        L  +L  G+ +++    +P    +   
Sbjct: 65  WRQWLD---------GW-LDRLGKVPAHKQPPRLRWLLHLGLYQVLRMQRIPASAAVDTT 114

Query: 131 VCIAHDFFYGDEPKFINAVLDKVSRKEEIKRSGCVS 166
           V +A           +N VL    R +E   +  V 
Sbjct: 115 VELAKRQRLSKLSPVVNGVLRSALRAKEAGETLPVP 150


>gi|124023762|ref|YP_001018069.1| Sun protein (Fmu protein) [Prochlorococcus marinus str. MIT 9303]
 gi|123964048|gb|ABM78804.1| Sun protein (Fmu protein) [Prochlorococcus marinus str. MIT 9303]
          Length = 450

 Score = 52.4 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 16/110 (14%), Positives = 37/110 (33%), Gaps = 18/110 (16%)

Query: 58  ESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRL--------DMILCSILR 109
           ++     D      + +G + ++Q +D          W   RL          +L  +L 
Sbjct: 47  QNPMSGADRGLVMELAYGAIRQRQWLDA---------W-LDRLGKVPACKQPPVLRWLLH 96

Query: 110 AGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEI 159
            G+ +++    +P    ++  V +A           +N +L    R  + 
Sbjct: 97  LGLYQILRMQRIPAAAAVNTSVELAKTGKLARLAPVVNGILRAALRARDA 146


>gi|227500111|ref|ZP_03930182.1| possible rRNA SAM-dependent methyltransferase RmsB [Anaerococcus
           tetradius ATCC 35098]
 gi|227217826|gb|EEI83123.1| possible rRNA SAM-dependent methyltransferase RmsB [Anaerococcus
           tetradius ATCC 35098]
          Length = 433

 Score = 52.4 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 19/93 (20%), Positives = 40/93 (43%), Gaps = 4/93 (4%)

Query: 66  LEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEV 125
           L +   +I+GV++ K ++D +I      K    ++   + +IL  G+  +    +    +
Sbjct: 35  LAYATKLIYGVLENKIYLDYMIGKL--SKVKIKKIHKNVLTILEMGLYNIHFLATKDYAI 92

Query: 126 IISEYVCIAHDFFYGDEPKFINAVLDKVSRKEE 158
           +  + V +           F+NA+L    R EE
Sbjct: 93  V-DKLVELCKK-KNKRSANFVNAILRNFIRNEE 123


>gi|300861499|ref|ZP_07107583.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
           faecalis TUSoD Ef11]
 gi|295114431|emb|CBL33068.1| ribosomal RNA small subunit methyltransferase RsmB [Enterococcus
           sp. 7L76]
 gi|300848960|gb|EFK76713.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
           faecalis TUSoD Ef11]
 gi|315144147|gb|EFT88163.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
           faecalis TX2141]
          Length = 459

 Score = 52.4 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 22/104 (21%), Positives = 45/104 (43%), Gaps = 3/104 (2%)

Query: 53  TELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGV 112
            E+  +S     D   F  +++G + RK  ++  ++  + +     ++D  + ++L   +
Sbjct: 36  NEMMTKSELSEKDGRLFTELVYGTISRKLLLEYYLTPFVKK---PQKVDNWVKNLLILSL 92

Query: 113 LELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRK 156
            +L+    VP   +I+E V I          KF+N VL    R 
Sbjct: 93  YQLLYLDKVPDHAVINEAVEIGKRRGNPGIGKFVNGVLRAFQRN 136


>gi|33862543|ref|NP_894103.1| Sun protein (Fmu protein) [Prochlorococcus marinus str. MIT 9313]
 gi|33640656|emb|CAE20445.1| Sun protein (Fmu protein) [Prochlorococcus marinus str. MIT 9313]
          Length = 451

 Score = 52.4 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 16/110 (14%), Positives = 37/110 (33%), Gaps = 18/110 (16%)

Query: 58  ESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRL--------DMILCSILR 109
           ++     D      + +G + ++Q +D          W   RL          +L  +L 
Sbjct: 48  QNPMSGADRGLVMELAYGAIRQRQWLDA---------W-LDRLGKVPACKQPPVLRWLLH 97

Query: 110 AGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEI 159
            G+ +++    +P    ++  V +A           +N +L    R  + 
Sbjct: 98  LGLYQILRMQRIPAAAAVNTSVELAKTGKLARLAPVVNGILRAALRARDA 147


>gi|123968018|ref|YP_001008876.1| Sun protein (Fmu protein) [Prochlorococcus marinus str. AS9601]
 gi|123198128|gb|ABM69769.1| Sun protein (Fmu protein) [Prochlorococcus marinus str. AS9601]
          Length = 438

 Score = 52.4 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 22/100 (22%), Positives = 43/100 (43%), Gaps = 2/100 (2%)

Query: 61  YLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHS 120
           +  +D+ +   +  G +  ++ +DL      T K +  +    L  +L  G+ +L++   
Sbjct: 37  FNPLDIAFITELSFGCIRYRKFLDLWTDH--TSKITHKKQPPKLRWLLHIGLYQLLKMDK 94

Query: 121 VPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIK 160
           +P    I+  V +A           +NA+L   SRK E K
Sbjct: 95  IPFPAAITTTVEVAKKTDLNGLAGTVNAILRNASRKLEQK 134


>gi|119773183|ref|YP_925923.1| sun protein [Shewanella amazonensis SB2B]
 gi|119765683|gb|ABL98253.1| sun protein [Shewanella amazonensis SB2B]
          Length = 427

 Score = 52.4 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 21/92 (22%), Positives = 34/92 (36%), Gaps = 3/92 (3%)

Query: 65  DLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVE 124
           D      I +GVM     +D L+S  + +         ++  +L  G  +L     VP  
Sbjct: 37  DKALLAEICYGVMRSLPQLDKLVSGYMQK--PLKGKQRVVHQLLLVGAYQL-YFTRVPAH 93

Query: 125 VIISEYVCIAHDFFYGDEPKFINAVLDKVSRK 156
             ISE         +    K +N VL  + R+
Sbjct: 94  AAISETAEGCRALGFESLVKVVNGVLRNIQRQ 125


>gi|257420431|ref|ZP_05597421.1| SUN protein [Enterococcus faecalis X98]
 gi|257162255|gb|EEU92215.1| SUN protein [Enterococcus faecalis X98]
 gi|315154707|gb|EFT98723.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
           faecalis TX0043]
          Length = 459

 Score = 52.4 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 22/104 (21%), Positives = 45/104 (43%), Gaps = 3/104 (2%)

Query: 53  TELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGV 112
            E+  +S     D   F  +++G + RK  ++  ++  + +     ++D  + ++L   +
Sbjct: 36  NEMMTKSELSEKDGRLFTELVYGTISRKLLLEYYLTPFVKK---PQKVDNWVKNLLILSL 92

Query: 113 LELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRK 156
            +L+    VP   +I+E V I          KF+N VL    R 
Sbjct: 93  YQLLYLDKVPDHAVINEAVEIGKRRGNPGIGKFVNGVLRAFQRN 136


>gi|29377578|ref|NP_816732.1| Sun protein [Enterococcus faecalis V583]
 gi|227554542|ref|ZP_03984589.1| RNA methyltransferase [Enterococcus faecalis HH22]
 gi|257417966|ref|ZP_05594960.1| SUN protein [Enterococcus faecalis T11]
 gi|29345045|gb|AAO82802.1| Sun protein [Enterococcus faecalis V583]
 gi|227176340|gb|EEI57312.1| RNA methyltransferase [Enterococcus faecalis HH22]
 gi|257159794|gb|EEU89754.1| SUN protein [Enterococcus faecalis T11]
 gi|315573270|gb|EFU85461.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
           faecalis TX0309B]
 gi|315581156|gb|EFU93347.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
           faecalis TX0309A]
          Length = 459

 Score = 52.4 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 22/104 (21%), Positives = 45/104 (43%), Gaps = 3/104 (2%)

Query: 53  TELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGV 112
            E+  +S     D   F  +++G + RK  ++  ++  + +     ++D  + ++L   +
Sbjct: 36  NEMMTKSELSEKDGRLFTELVYGTISRKLLLEYYLTPFVKK---PQKVDNWVKNLLILSL 92

Query: 113 LELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRK 156
            +L+    VP   +I+E V I          KF+N VL    R 
Sbjct: 93  YQLLYLDKVPDHAVINEAVEIGKRRGNPGIGKFVNGVLRAFQRN 136


>gi|227517271|ref|ZP_03947320.1| RNA methyltransferase [Enterococcus faecalis TX0104]
 gi|229548022|ref|ZP_04436747.1| RNA methyltransferase [Enterococcus faecalis ATCC 29200]
 gi|255970686|ref|ZP_05421272.1| sun protein [Enterococcus faecalis T1]
 gi|255974266|ref|ZP_05424852.1| sun protein [Enterococcus faecalis T2]
 gi|256618123|ref|ZP_05474969.1| fmu family protein [Enterococcus faecalis ATCC 4200]
 gi|256761053|ref|ZP_05501633.1| sun protein [Enterococcus faecalis T3]
 gi|256854793|ref|ZP_05560157.1| sun protein [Enterococcus faecalis T8]
 gi|256962961|ref|ZP_05567132.1| fmu [Enterococcus faecalis HIP11704]
 gi|257083204|ref|ZP_05577565.1| conserved hypothetical protein [Enterococcus faecalis Fly1]
 gi|257088233|ref|ZP_05582594.1| conserved hypothetical protein [Enterococcus faecalis D6]
 gi|257091364|ref|ZP_05585725.1| SUN protein [Enterococcus faecalis CH188]
 gi|307273621|ref|ZP_07554849.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
           faecalis TX0855]
 gi|307284853|ref|ZP_07565009.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
           faecalis TX0860]
 gi|307288887|ref|ZP_07568860.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
           faecalis TX0109]
 gi|312902128|ref|ZP_07761388.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
           faecalis TX0470]
 gi|312905428|ref|ZP_07764542.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
           faecalis TX0635]
 gi|312953217|ref|ZP_07772063.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
           faecalis TX0102]
 gi|227075278|gb|EEI13241.1| RNA methyltransferase [Enterococcus faecalis TX0104]
 gi|229306898|gb|EEN72894.1| RNA methyltransferase [Enterococcus faecalis ATCC 29200]
 gi|255961704|gb|EET94180.1| sun protein [Enterococcus faecalis T1]
 gi|255967138|gb|EET97760.1| sun protein [Enterococcus faecalis T2]
 gi|256597650|gb|EEU16826.1| fmu family protein [Enterococcus faecalis ATCC 4200]
 gi|256682304|gb|EEU21999.1| sun protein [Enterococcus faecalis T3]
 gi|256710353|gb|EEU25397.1| sun protein [Enterococcus faecalis T8]
 gi|256953457|gb|EEU70089.1| fmu [Enterococcus faecalis HIP11704]
 gi|256991234|gb|EEU78536.1| conserved hypothetical protein [Enterococcus faecalis Fly1]
 gi|256996263|gb|EEU83565.1| conserved hypothetical protein [Enterococcus faecalis D6]
 gi|257000176|gb|EEU86696.1| SUN protein [Enterococcus faecalis CH188]
 gi|306500159|gb|EFM69503.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
           faecalis TX0109]
 gi|306503112|gb|EFM72369.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
           faecalis TX0860]
 gi|306509634|gb|EFM78676.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
           faecalis TX0855]
 gi|310628834|gb|EFQ12117.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
           faecalis TX0102]
 gi|310631157|gb|EFQ14440.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
           faecalis TX0635]
 gi|311290792|gb|EFQ69348.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
           faecalis TX0470]
 gi|315026431|gb|EFT38363.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
           faecalis TX2137]
 gi|315028355|gb|EFT40287.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
           faecalis TX4000]
 gi|315031807|gb|EFT43739.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
           faecalis TX0017]
 gi|315150899|gb|EFT94915.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
           faecalis TX0012]
 gi|315152786|gb|EFT96802.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
           faecalis TX0031]
 gi|315159379|gb|EFU03396.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
           faecalis TX0312]
 gi|315161202|gb|EFU05219.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
           faecalis TX0645]
 gi|315164414|gb|EFU08431.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
           faecalis TX1302]
 gi|315167222|gb|EFU11239.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
           faecalis TX1341]
 gi|315171200|gb|EFU15217.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
           faecalis TX1342]
 gi|315577118|gb|EFU89309.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
           faecalis TX0630]
 gi|323479050|gb|ADX78489.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
           faecalis 62]
 gi|327536239|gb|AEA95073.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
           faecalis OG1RF]
          Length = 459

 Score = 52.0 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 22/104 (21%), Positives = 45/104 (43%), Gaps = 3/104 (2%)

Query: 53  TELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGV 112
            E+  +S     D   F  +++G + RK  ++  ++  + +     ++D  + ++L   +
Sbjct: 36  NEMMTKSELSEKDGRLFTELVYGTISRKLLLEYYLTPFVKK---PQKVDNWVKNLLILSL 92

Query: 113 LELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRK 156
            +L+    VP   +I+E V I          KF+N VL    R 
Sbjct: 93  YQLLYLDKVPDHAVINEAVEIGKRRGNPGIGKFVNGVLRAFQRN 136


>gi|307276657|ref|ZP_07557775.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
           faecalis TX2134]
 gi|306506767|gb|EFM75919.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
           faecalis TX2134]
          Length = 459

 Score = 52.0 bits (124), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 22/104 (21%), Positives = 45/104 (43%), Gaps = 3/104 (2%)

Query: 53  TELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGV 112
            E+  +S     D   F  +++G + RK  ++  ++  + +     ++D  + ++L   +
Sbjct: 36  NEMMTKSELSEKDGRLFTELVYGTISRKLLLEYYLTPFVKK---PQKVDNWVKNLLILSL 92

Query: 113 LELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRK 156
            +L+    VP   +I+E V I          KF+N VL    R 
Sbjct: 93  YQLLYLDKVPDHAVINEAVEIGKRRGNPGIGKFVNGVLRAFQRN 136


>gi|242277628|ref|YP_002989757.1| NusB/RsmB/TIM44 [Desulfovibrio salexigens DSM 2638]
 gi|242120522|gb|ACS78218.1| NusB/RsmB/TIM44 [Desulfovibrio salexigens DSM 2638]
          Length = 427

 Score = 52.0 bits (124), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 21/94 (22%), Positives = 36/94 (38%), Gaps = 4/94 (4%)

Query: 65  DLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVE 124
           D  +   I++G +  +  +  +++  L+          IL  +L     E++    VP  
Sbjct: 45  DRGFVTEILYGYLRMRLRLQSVLNCFLSRPDGLP--APILR-VLGMAAYEILHM-DVPAY 100

Query: 125 VIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEE 158
             +   V  A     G      NAVL KV+R  E
Sbjct: 101 ASVDWGVDSAKRLSRGKLGGLANAVLRKVARLAE 134


>gi|229547453|ref|ZP_04436178.1| RNA methyltransferase [Enterococcus faecalis TX1322]
 gi|229307485|gb|EEN73472.1| RNA methyltransferase [Enterococcus faecalis TX1322]
          Length = 459

 Score = 52.0 bits (124), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 22/104 (21%), Positives = 45/104 (43%), Gaps = 3/104 (2%)

Query: 53  TELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGV 112
            E+  +S     D   F  +++G + RK  ++  ++  + +     ++D  + ++L   +
Sbjct: 36  NEMMTKSELSEKDGRLFTELVYGTISRKLLLEYYLTPFVKK---PQKVDNWVKNLLILSL 92

Query: 113 LELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRK 156
            +L+    VP   +I+E V I          KF+N VL    R 
Sbjct: 93  YQLLYLDKVPDHAVINEAVEIGKRRGNPGIGKFVNGVLRAFQRN 136


>gi|209551488|ref|YP_002283405.1| Fmu (Sun) domain protein [Rhizobium leguminosarum bv. trifolii
           WSM2304]
 gi|209537244|gb|ACI57179.1| Fmu (Sun) domain protein [Rhizobium leguminosarum bv. trifolii
           WSM2304]
          Length = 462

 Score = 52.0 bits (124), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 36/166 (21%), Positives = 58/166 (34%), Gaps = 19/166 (11%)

Query: 3   IQDNKKDLKLSHRRGIARLAAVQ-ALYQIDIIGCSTTEIISEYETYRFCADTELDVE--- 58
             D  K     H+R   R A V+  L        +  +I+      +   D  LD E   
Sbjct: 4   NSDGTKKPFRKHKRSTERSAPVKPGL----QARAAAAKILGAVVERKLPLDGALDHEHGN 59

Query: 59  ---SVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLEL 115
                    D    R I++  +     ID  ISS L            L  +L  GV ++
Sbjct: 60  PAYKALGESDRALVRAILNTTLRHLPRIDAAISSLLES--PLPEGARALQHVLAIGVAQI 117

Query: 116 IECHSVPVEVIISEYVCIAHDFFYGDEPKF---INAVLDKVSRKEE 158
           +    VP    +   V  A+        +F   +NAVL ++ R+++
Sbjct: 118 LY-LDVPDHSAVDLAVEQANQ--DPRNRRFAKLVNAVLRRLGREKD 160


>gi|84684376|ref|ZP_01012277.1| ribosomal RNA small subunit methyltransferase B, putative
           [Maritimibacter alkaliphilus HTCC2654]
 gi|84667355|gb|EAQ13824.1| ribosomal RNA small subunit methyltransferase B, putative
           [Rhodobacterales bacterium HTCC2654]
          Length = 420

 Score = 52.0 bits (124), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 21/112 (18%), Positives = 39/112 (34%), Gaps = 11/112 (9%)

Query: 45  ETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMIL 104
           E  R   +            D    + ++          D ++   L ++ +  R+    
Sbjct: 21  EHGRLLPEVLPRRLEKLAPEDRARTQRLVATAFRVMDRADRVLGPHLRKRPTL-RI---- 75

Query: 105 CSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKF---INAVLDKV 153
            +ILR  V E+ E  + P  V+ +  V +A              +NA+L KV
Sbjct: 76  HNILRLSVAEICELGAAPHGVV-NTAVELARA--DKKTAGMAGLVNAILRKV 124


>gi|20095066|ref|NP_614913.1| tRNA/rRNA cytosine-C5-methylase [Methanopyrus kandleri AV19]
 gi|19888345|gb|AAM02843.1| tRNA/rRNA cytosine-C5-methylase [Methanopyrus kandleri AV19]
          Length = 448

 Score = 52.0 bits (124), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 34/135 (25%), Positives = 52/135 (38%), Gaps = 15/135 (11%)

Query: 21  LAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRK 80
           L AV+AL  ++  G    E +      R C D  +DV            +  ++  + R+
Sbjct: 5   LLAVKALVLVETRGMPIPEAVE-----RTCRDRPIDVRRSV--------QAFVYETIKRR 51

Query: 81  QHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYG 140
             +D L+++         R   +   ILR G LE+    + P  V     V IA      
Sbjct: 52  NLLDELVAAGSDAHPEDVRSPYV-RQILRVGTLEMKIWRNPPPAVT-DCMVRIAKRLVGS 109

Query: 141 DEPKFINAVLDKVSR 155
               F+NAVL  V R
Sbjct: 110 KAGAFVNAVLRGVER 124


>gi|281413929|ref|ZP_06245671.1| ribosomal RNA small subunit methyltransferase RsmB [Micrococcus
           luteus NCTC 2665]
          Length = 305

 Score = 52.0 bits (124), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 27/163 (16%), Positives = 55/163 (33%), Gaps = 13/163 (7%)

Query: 4   QDNKKDLKLSHRRG---IARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDV--- 57
           QD +     +  RG    AR  + QA  Q          +           D   ++   
Sbjct: 29  QDRRDAQGRTRNRGRSGAARKYSAQAPSQRSRTADPARRVAFGVVRSVHAEDAYANLVLP 88

Query: 58  ----ESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVL 113
               ++     D  +   + +G +      D +++ C+       ++D  +   LR G  
Sbjct: 89  ARIRQARLDRRDAGFATELAYGTLRGLGLYDAILTRCVDR--PLEKIDPPVLDALRLGAH 146

Query: 114 ELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRK 156
           +L+    VP    +   V +           F+NAVL +++ +
Sbjct: 147 QLLGMR-VPAHAALDATVSLVRAEVGAGASGFVNAVLRRIAER 188


>gi|323699391|ref|ZP_08111303.1| Fmu (Sun) domain protein [Desulfovibrio sp. ND132]
 gi|323459323|gb|EGB15188.1| Fmu (Sun) domain protein [Desulfovibrio desulfuricans ND132]
          Length = 424

 Score = 52.0 bits (124), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 22/137 (16%), Positives = 46/137 (33%), Gaps = 14/137 (10%)

Query: 18  IARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVM 77
            AR  A++AL++  +        +    +             V    DL     + +G +
Sbjct: 11  AARRVALEALFRCLMNRQDIQASLDAALS-----------SGVDDPRDLGLATELSYGYL 59

Query: 78  DRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDF 137
             K  I+ ++S  L       +L+  +   +     E++    +P    +   V  +   
Sbjct: 60  RLKGRIEYVLSRFLK---DPGKLNPKMRLAMGVAAYEILFLDKIPAYASVDWAVEFSKSK 116

Query: 138 FYGDEPKFINAVLDKVS 154
                    NAVL +V+
Sbjct: 117 PGARLAGLFNAVLRRVA 133


>gi|332559578|ref|ZP_08413900.1| Fmu (Sun) domain-containing protein [Rhodobacter sphaeroides WS8N]
 gi|332277290|gb|EGJ22605.1| Fmu (Sun) domain-containing protein [Rhodobacter sphaeroides WS8N]
          Length = 410

 Score = 52.0 bits (124), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 20/126 (15%), Positives = 46/126 (36%), Gaps = 9/126 (7%)

Query: 31  DIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSC 90
           +  G + T + +     +  +    D+       +    + +   V+      D L++  
Sbjct: 4   EARGMAVTLLDAVLGEGKLLSQALADLPGAAAPAERARAQRLASSVLRHLGPADRLLAPH 63

Query: 91  LTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEP--KFINA 148
           L +          + +ILR   +E+    + P  V+ S  V +A       +     +NA
Sbjct: 64  LRKAPPL-----TVRNILRLATVEMAADGAAPHGVV-SSAVDLARR-GRRTQHLAGLVNA 116

Query: 149 VLDKVS 154
           VL +++
Sbjct: 117 VLRRIA 122


>gi|77464685|ref|YP_354189.1| rRNA methyltransferase RsmB-like [Rhodobacter sphaeroides 2.4.1]
 gi|77389103|gb|ABA80288.1| rRNA methyltransferase RsmB-like [Rhodobacter sphaeroides 2.4.1]
          Length = 421

 Score = 52.0 bits (124), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 17/87 (19%), Positives = 35/87 (40%), Gaps = 9/87 (10%)

Query: 70  RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISE 129
           + +   V+      D L++  L +          + +ILR   +E+    + P  V+ S 
Sbjct: 56  QRLASSVLRHLGPADRLLAPHLRKAPPL-----TVRNILRLATVEMAADGAAPHGVV-SS 109

Query: 130 YVCIAHDFFYGDEP--KFINAVLDKVS 154
            V +A       +     +NAVL +++
Sbjct: 110 AVDLARR-GRRTQHLAGLVNAVLRRIA 135


>gi|127514666|ref|YP_001095863.1| sun protein [Shewanella loihica PV-4]
 gi|126639961|gb|ABO25604.1| sun protein [Shewanella loihica PV-4]
          Length = 427

 Score = 52.0 bits (124), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 27/139 (19%), Positives = 51/139 (36%), Gaps = 15/139 (10%)

Query: 20  RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79
           R  A + ++Q+   G S +  + E              + +    D      + +GVM  
Sbjct: 5   RALAARVVFQVLEKGVSLSVALPE------------QQQRLTSGKDKALLAELCYGVMRH 52

Query: 80  KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139
              +D L+S C+++         I+  +L  G  +L     +P    ISE         +
Sbjct: 53  LPQLDKLVSDCMSK--PLKGKQRIVHQLLLVGCYQL-YFTRIPGHAAISETAEACRQLKF 109

Query: 140 GDEPKFINAVLDKVSRKEE 158
               K +N VL  + R ++
Sbjct: 110 EGLVKVVNGVLRNLQRNQK 128


>gi|160873155|ref|YP_001552471.1| sun protein [Shewanella baltica OS195]
 gi|160858677|gb|ABX47211.1| sun protein [Shewanella baltica OS195]
 gi|315265380|gb|ADT92233.1| sun protein [Shewanella baltica OS678]
          Length = 428

 Score = 52.0 bits (124), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 27/137 (19%), Positives = 50/137 (36%), Gaps = 15/137 (10%)

Query: 20  RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79
           R  A +A++++   G S +  + + + +            +    D      + +GVM  
Sbjct: 4   RALAAKAIFEVLEKGVSLSVALPDQQKH------------LASGKDKALLAELCYGVMRT 51

Query: 80  KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139
              I+  IS CL +         I+  +L  G  +L     +P    ISE         +
Sbjct: 52  LPQIEKRISECLAK--PLKGKQRIIHQLLIIGCYQL-YFTRIPSHAAISETAEACRQLKF 108

Query: 140 GDEPKFINAVLDKVSRK 156
               K +N VL  + R+
Sbjct: 109 EGMVKVVNGVLRNIQRQ 125


>gi|86359687|ref|YP_471579.1| RNA methyltransferase - sun protein [Rhizobium etli CFN 42]
 gi|86283789|gb|ABC92852.1| probable RNA methyltransferase - sun protein [Rhizobium etli CFN
           42]
          Length = 464

 Score = 51.6 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 24/111 (21%), Positives = 44/111 (39%), Gaps = 10/111 (9%)

Query: 63  HVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVP 122
             D    R I++  +     ID  I+S L            L  +L  G  +++    VP
Sbjct: 69  ESDRALVRAILNTTLRHLPRIDAAIASLLES--PLPEGARALHHVLAIGAAQILY-LDVP 125

Query: 123 VEVIISEYVCIAHDFFYGDEPKF---INAVLDKVSRKEE--IKRSGCVSAI 168
               +   V  A+        +F   +NAVL ++ R+++  + R G V+ +
Sbjct: 126 DHSAVDLAVEQANQ--DPRNRRFAKLVNAVLRRLGREKDEVLARIGKVAPM 174


>gi|269215462|ref|ZP_06159316.1| putative Fmu, rRNA SAM-dependent methyltransferase:Nop2p [Slackia
           exigua ATCC 700122]
 gi|269130949|gb|EEZ62024.1| putative Fmu, rRNA SAM-dependent methyltransferase:Nop2p [Slackia
           exigua ATCC 700122]
          Length = 502

 Score = 51.6 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 19/100 (19%), Positives = 35/100 (35%), Gaps = 5/100 (5%)

Query: 59  SVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIEC 118
                 D+ +   +  GV      +D  I   ++   S   +   +   LR    EL+  
Sbjct: 97  EDIDPKDVAFATRLSKGVAATWGTLDEFIDRTMS---SPDDIQADVRDALRVSAYELVFL 153

Query: 119 HSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEE 158
           H  P  V++ + V +   F         NAVL ++    +
Sbjct: 154 HK-PPHVVVDQGVELVR-FVEPKAANLANAVLHRMVEAAD 191


>gi|319424439|gb|ADV52513.1| sun protein [Shewanella putrefaciens 200]
          Length = 429

 Score = 51.6 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 28/137 (20%), Positives = 50/137 (36%), Gaps = 15/137 (10%)

Query: 20  RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79
           R  A +A++++   G S +  + E + +            +    D      + +GVM  
Sbjct: 4   RALAAKAIFEVLEKGVSLSVALPEQQKH------------LASGKDKALLAELCYGVMRT 51

Query: 80  KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139
              I+  IS CL +         I+  +L  G  +L     +P    ISE         +
Sbjct: 52  LPQIEKRISECLEK--PLKGKQRIIHQLLIVGCYQL-YFTRIPSHAAISETAEACRQLKF 108

Query: 140 GDEPKFINAVLDKVSRK 156
               K +N VL  + R+
Sbjct: 109 EGMVKVVNGVLRNIQRQ 125


>gi|319409409|emb|CBI83055.1| SUN-family protein [Bartonella schoenbuchensis R1]
          Length = 447

 Score = 51.6 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 21/122 (17%), Positives = 42/122 (34%), Gaps = 10/122 (8%)

Query: 40  IISEYETYRFCADTELDVESVY--LHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSF 97
           ++ ++++     D E          H D    R I+   +  +  I   +S  L      
Sbjct: 22  VLDKHKSLSGLTDHEYGHPHYLKLSHRDRLLCRAILMAALRHRGQITAALSRFLKRPLPL 81

Query: 98  SRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKF---INAVLDKVS 154
             L   L  +L     +++    +P    I   V +A         +F   +NA+L   +
Sbjct: 82  QALS--LQHLLHISAAQILY-LDIPDHAAIDLAVQMAKI--DPRTRRFSGLVNAILRNFA 136

Query: 155 RK 156
           R+
Sbjct: 137 RE 138


>gi|146291133|ref|YP_001181557.1| sun protein [Shewanella putrefaciens CN-32]
 gi|145562823|gb|ABP73758.1| sun protein [Shewanella putrefaciens CN-32]
          Length = 429

 Score = 51.6 bits (123), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 28/137 (20%), Positives = 50/137 (36%), Gaps = 15/137 (10%)

Query: 20  RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79
           R  A +A++++   G S +  + E + +            +    D      + +GVM  
Sbjct: 4   RALAAKAIFEVLEKGVSLSVALPEQQKH------------LASGKDKALLAELCYGVMRT 51

Query: 80  KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139
              I+  IS CL +         I+  +L  G  +L     +P    ISE         +
Sbjct: 52  LPQIEKRISECLEK--PLKGKQRIIHQLLIVGCYQL-YFTRIPSHAAISETAEACRQLKF 108

Query: 140 GDEPKFINAVLDKVSRK 156
               K +N VL  + R+
Sbjct: 109 EGMVKVVNGVLRNIQRQ 125


>gi|86160386|ref|YP_467171.1| NusB/RsmB/TIM44 family protein [Anaeromyxobacter dehalogenans
           2CP-C]
 gi|85776897|gb|ABC83734.1| NusB/RsmB/TIM44 family protein [Anaeromyxobacter dehalogenans
           2CP-C]
          Length = 455

 Score = 51.6 bits (123), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 21/100 (21%), Positives = 38/100 (38%), Gaps = 3/100 (3%)

Query: 68  WFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVII 127
               +++G + R   +D  ++         + LD      LR G  +L+     P    +
Sbjct: 51  LATQLVYGTLRRALALDAALAPHSRR--PLAELDPAARVALRLGAYQLL-VLGTPAHAAV 107

Query: 128 SEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRSGCVSA 167
            E V +A    +G    ++NAVL  +SR         + A
Sbjct: 108 GETVTLAKAADHGRAAGYVNAVLRALSRAPRFPDPPALEA 147


>gi|126172286|ref|YP_001048435.1| sun protein [Shewanella baltica OS155]
 gi|125995491|gb|ABN59566.1| sun protein [Shewanella baltica OS155]
          Length = 428

 Score = 51.6 bits (123), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 27/137 (19%), Positives = 50/137 (36%), Gaps = 15/137 (10%)

Query: 20  RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79
           R  A +A++++   G S +  + + + +            +    D      + +GVM  
Sbjct: 4   RALAAKAIFEVLEKGVSLSVALPDQQKH------------LASGKDKALLAELCYGVMRT 51

Query: 80  KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139
              I+  IS CL +         I+  +L  G  +L     +P    ISE         +
Sbjct: 52  LPQIEKRISECLAK--PLKGKQRIIHQLLIIGCYQL-YFTRIPSHAAISETAEACRQLKF 108

Query: 140 GDEPKFINAVLDKVSRK 156
               K +N VL  + R+
Sbjct: 109 EGMVKVVNGVLRNIQRQ 125


>gi|217971245|ref|YP_002355996.1| sun protein [Shewanella baltica OS223]
 gi|217496380|gb|ACK44573.1| sun protein [Shewanella baltica OS223]
          Length = 428

 Score = 51.6 bits (123), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 27/137 (19%), Positives = 50/137 (36%), Gaps = 15/137 (10%)

Query: 20  RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79
           R  A +A++++   G S +  + + + +            +    D      + +GVM  
Sbjct: 4   RALAAKAIFEVLEKGVSLSVALPDQQKH------------LASGKDKALLAELCYGVMRT 51

Query: 80  KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139
              I+  IS CL +         I+  +L  G  +L     +P    ISE         +
Sbjct: 52  LPQIEKRISECLAK--PLKGKQRIIHQLLIIGCYQL-YFTRIPSHAAISETAEACRQLKF 108

Query: 140 GDEPKFINAVLDKVSRK 156
               K +N VL  + R+
Sbjct: 109 EGMVKVVNGVLRNIQRQ 125


>gi|304412733|ref|ZP_07394336.1| sun protein [Shewanella baltica OS183]
 gi|307305802|ref|ZP_07585548.1| sun protein [Shewanella baltica BA175]
 gi|304348943|gb|EFM13358.1| sun protein [Shewanella baltica OS183]
 gi|306911295|gb|EFN41721.1| sun protein [Shewanella baltica BA175]
          Length = 428

 Score = 51.6 bits (123), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 27/137 (19%), Positives = 50/137 (36%), Gaps = 15/137 (10%)

Query: 20  RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79
           R  A +A++++   G S +  + + + +            +    D      + +GVM  
Sbjct: 4   RALAAKAIFEVLEKGVSLSVALPDQQKH------------LASGKDKALLAELCYGVMRT 51

Query: 80  KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139
              I+  IS CL +         I+  +L  G  +L     +P    ISE         +
Sbjct: 52  LPQIEKRISECLAK--PLKGKQRIIHQLLIIGCYQL-YFTRIPSHAAISETAEACRQLKF 108

Query: 140 GDEPKFINAVLDKVSRK 156
               K +N VL  + R+
Sbjct: 109 EGMVKVVNGVLRNIQRQ 125


>gi|317124745|ref|YP_004098857.1| Fmu (Sun) domain protein [Intrasporangium calvum DSM 43043]
 gi|315588833|gb|ADU48130.1| Fmu (Sun) domain protein [Intrasporangium calvum DSM 43043]
          Length = 501

 Score = 51.6 bits (123), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 20/111 (18%), Positives = 41/111 (36%), Gaps = 3/111 (2%)

Query: 46  TYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILC 105
            Y   A  +L  E      D  +   +++G        D + +          ++D  + 
Sbjct: 52  AYANLALPKLLREKRLHGRDAAFATELVYGATRLSGLYDAITTRA--AGRPVEQIDPAVL 109

Query: 106 SILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRK 156
             +R G  +++    VP    + E V +A          F+NAV+ ++S +
Sbjct: 110 DSIRLGAHQVLGMR-VPSHAAVDETVALARQVNGSGAAGFVNAVMRRISER 159


>gi|152998580|ref|YP_001364261.1| sun protein [Shewanella baltica OS185]
 gi|151363198|gb|ABS06198.1| sun protein [Shewanella baltica OS185]
          Length = 428

 Score = 51.6 bits (123), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 27/137 (19%), Positives = 50/137 (36%), Gaps = 15/137 (10%)

Query: 20  RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79
           R  A +A++++   G S +  + + + +            +    D      + +GVM  
Sbjct: 4   RALAAKAIFEVLEKGVSLSVALPDQQKH------------LASGKDKALLAELCYGVMRT 51

Query: 80  KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139
              I+  IS CL +         I+  +L  G  +L     +P    ISE         +
Sbjct: 52  LPQIEKRISECLAK--PLKGKQRIIHQLLIIGCYQL-YFTRIPSHAAISETAEACRQLKF 108

Query: 140 GDEPKFINAVLDKVSRK 156
               K +N VL  + R+
Sbjct: 109 EGMVKVVNGVLRNIQRQ 125


>gi|52426258|ref|YP_089395.1| Sun protein [Mannheimia succiniciproducens MBEL55E]
 gi|52308310|gb|AAU38810.1| Sun protein [Mannheimia succiniciproducens MBEL55E]
          Length = 470

 Score = 51.6 bits (123), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 19/127 (14%), Positives = 47/127 (37%), Gaps = 3/127 (2%)

Query: 32  IIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCL 91
           +   S   I+   +  +  +    +++S     DL   + I  GV      ++ +I   +
Sbjct: 31  VRALSARIILQVLDQGKSLSALIPELQSQVKAQDLPLLQEICFGVCRVLPRLEQIIKKLV 90

Query: 92  TEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLD 151
            +         I+  +L  G+ +++    +P    + E V         +    +N VL 
Sbjct: 91  DK--PLKGKTRIVHCLLLVGLYQILYTR-IPAHAAVDEVVNATSALKSENFRGLVNGVLR 147

Query: 152 KVSRKEE 158
           +  R+++
Sbjct: 148 RFLREQQ 154


>gi|318040449|ref|ZP_07972405.1| sun protein [Synechococcus sp. CB0101]
          Length = 454

 Score = 51.3 bits (122), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 24/140 (17%), Positives = 42/140 (30%), Gaps = 14/140 (10%)

Query: 20  RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79
           R  A Q L Q    G      +                 +     D      + +G + +
Sbjct: 19  RRLAWQVL-QAVAAGAYADGALEREL-----------GRTSLSPADRGLATELAYGAIRQ 66

Query: 80  KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139
           ++ +D  +      K    R    L  +L  G+ +L+    VP    +S  V +A     
Sbjct: 67  RRLLDAWLDQL--GKVPAERQPPKLRWLLHIGLYQLLASDRVPPSAAVSTTVELAKRGGL 124

Query: 140 GDEPKFINAVLDKVSRKEEI 159
                  N +L    R+ E 
Sbjct: 125 ARLAPVANGMLRAFLRRREA 144


>gi|328955666|ref|YP_004372999.1| NusB/RsmB/TIM44 [Coriobacterium glomerans PW2]
 gi|328455990|gb|AEB07184.1| NusB/RsmB/TIM44 [Coriobacterium glomerans PW2]
          Length = 470

 Score = 51.3 bits (122), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 20/90 (22%), Positives = 31/90 (34%), Gaps = 5/90 (5%)

Query: 65  DLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVE 124
           D  +   +  G       +D +I   L       R+   +   LR    ELI     P  
Sbjct: 45  DAAFAMRLALGATVTSGALDEVIDMHLDH---PRRVSARVRIALRIAAFELIY-LERPPA 100

Query: 125 VIISEYVCIAHDFFYGDEPKFINAVLDKVS 154
           V +S+ V +             NAVL +V+
Sbjct: 101 VAVSQGVELVGSI-ARSATGLANAVLRRVA 129


>gi|78355064|ref|YP_386513.1| sun protein [Desulfovibrio desulfuricans subsp. desulfuricans str.
           G20]
 gi|78217469|gb|ABB36818.1| sun protein [Desulfovibrio desulfuricans subsp. desulfuricans str.
           G20]
          Length = 444

 Score = 51.3 bits (122), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 35/157 (22%), Positives = 58/157 (36%), Gaps = 22/157 (14%)

Query: 11  KLSHRRG------IARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHV 64
           K S RRG       AR AA++ L           +++ +    +   D+ L  ++     
Sbjct: 3   KQSPRRGGVATLPPARGAALEIL----------RDVLDKKREAQSVLDSYLK-DNRLSPQ 51

Query: 65  DLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVE 124
           D      +++G +  +  I  LI   L      SRL   L   +   V E++    VPV 
Sbjct: 52  DAALCTELVYGYLRSEIRISWLIRRFLKPD---SRLPAELLLTMGISVYEILYLQRVPVY 108

Query: 125 VIISEYVC-IAHDFFYGDEPKFINAVLDKVSRKEEIK 160
             +   V  +   F  G   +  NAVL  + R  +  
Sbjct: 109 ASVDWAVSYVRSRFGTGLS-RLANAVLRSIDRLGDAP 144


>gi|218460752|ref|ZP_03500843.1| RNA methyltransferase - sun protein [Rhizobium etli Kim 5]
          Length = 466

 Score = 51.3 bits (122), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 24/111 (21%), Positives = 43/111 (38%), Gaps = 10/111 (9%)

Query: 63  HVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVP 122
             D    R I++  +     ID  I+S L            L  +L  G  +++    VP
Sbjct: 71  ESDRALVRAILNTTLRHLPRIDAAIASLLES--PLPEGARALHHVLAIGAAQILY-LDVP 127

Query: 123 VEVIISEYVCIAHDFFYGDEPKF---INAVLDKVSRKEE--IKRSGCVSAI 168
               +   V  A+        +F   +NAVL ++ R++E  +   G V+ +
Sbjct: 128 DHSAVDLAVEQANQ--DPRNRRFAKLVNAVLRRLGREKEEVLAEIGKVAPM 176


>gi|116254448|ref|YP_770286.1| ribosomal RNA small subunit methyltransferase B [Rhizobium
           leguminosarum bv. viciae 3841]
 gi|115259096|emb|CAK10207.1| putative ribosomal RNA small subunit methyltransferase B [Rhizobium
           leguminosarum bv. viciae 3841]
          Length = 460

 Score = 51.3 bits (122), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 20/99 (20%), Positives = 37/99 (37%), Gaps = 8/99 (8%)

Query: 63  HVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVP 122
             D    R I++  +     ID  I+  L            L  +L  G  +++    VP
Sbjct: 65  ESDRALVRAILNTTLRHLPRIDAAIAGLLDS--PLPEGARALHHVLAIGAAQILY-LDVP 121

Query: 123 VEVIISEYVCIAHDFFYGDEPKF---INAVLDKVSRKEE 158
               +   V  A+        +F   +NA+L ++ R++E
Sbjct: 122 DHSAVDLAVEQANQ--DPRNRRFAKLVNAILRRLGREKE 158


>gi|163797843|ref|ZP_02191788.1| tRNA and rRNA cytosine-C5-methylase [alpha proteobacterium BAL199]
 gi|159176887|gb|EDP61454.1| tRNA and rRNA cytosine-C5-methylase [alpha proteobacterium BAL199]
          Length = 436

 Score = 51.3 bits (122), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 29/161 (18%), Positives = 57/161 (35%), Gaps = 20/161 (12%)

Query: 1   MTIQDNKKDLKLSHRRGIARLAAVQALYQIDIIG-CSTTEIISEYETYRFCADTELDVES 59
           M       D K+S  R +    A   L++  +       E ++ +           D  +
Sbjct: 1   MADTRTVSDNKVSASRSV----AFD-LFRAVLAKRTPLDEALAAH-----------DGLA 44

Query: 60  VYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECH 119
                D  + R+++   + R  H+D L+ +C+ +         ++  ILR    EL+   
Sbjct: 45  KLPERDRGFARLLVATTLRRLGHVDRLVDACIDKPLPTK--AAVVRDILRLAASELL-IL 101

Query: 120 SVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIK 160
            V     +   V       +    K  NAVL ++ R+   +
Sbjct: 102 GVAPHAAVDSAVNTVRSRGHEPFVKLTNAVLRRLDREGRGE 142


>gi|220919194|ref|YP_002494498.1| NusB/RsmB/TIM44 [Anaeromyxobacter dehalogenans 2CP-1]
 gi|219957048|gb|ACL67432.1| NusB/RsmB/TIM44 [Anaeromyxobacter dehalogenans 2CP-1]
          Length = 455

 Score = 51.3 bits (122), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 21/100 (21%), Positives = 39/100 (39%), Gaps = 3/100 (3%)

Query: 68  WFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVII 127
               +++G + R   +D  ++       + + LD      LR G  +L+     P    +
Sbjct: 51  LATELVYGTLRRALALDAALAPHSRR--ALAELDPAARVALRLGAYQLL-VLGTPAHAAV 107

Query: 128 SEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRSGCVSA 167
            E V +A    +G    ++NAVL  +SR         + A
Sbjct: 108 GETVALAKAVDHGRAAGYVNAVLRSLSRAARFPDPPALEA 147


>gi|118602253|ref|YP_903468.1| sun protein [Candidatus Ruthia magnifica str. Cm (Calyptogena
           magnifica)]
 gi|118567192|gb|ABL01997.1| 16S rRNA m(5)C-967 methyltransferase [Candidatus Ruthia magnifica
           str. Cm (Calyptogena magnifica)]
          Length = 421

 Score = 51.3 bits (122), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 24/140 (17%), Positives = 54/140 (38%), Gaps = 21/140 (15%)

Query: 20  RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79
           R  A++A+Y + I   S +        + +  D            D    + ++ G +  
Sbjct: 7   RFIALEAIYSVIINKKSLS-------AFNYPKDN-----------DTPLIKSLVFGTIRF 48

Query: 80  KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139
              ++ ++S  L   +    LD+    ++  G  +L+    + +   I E V + +    
Sbjct: 49  YHQLNDIVSKRLKHSFKKEDLDV--HCLMLLGAYQLLYSK-IAIHASIFETVNVVNALNK 105

Query: 140 GDEPKFINAVLDKVSRKEEI 159
                 +NA+L K+ R ++I
Sbjct: 106 PWAKALVNAILRKIDRDKKI 125


>gi|84496642|ref|ZP_00995496.1| putative RNA-binding Sun protein [Janibacter sp. HTCC2649]
 gi|84383410|gb|EAP99291.1| putative RNA-binding Sun protein [Janibacter sp. HTCC2649]
          Length = 500

 Score = 51.3 bits (122), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 20/92 (21%), Positives = 37/92 (40%), Gaps = 3/92 (3%)

Query: 65  DLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVE 124
           D  +   +  G +  +   D +I        S S +D  +  +LR G  +L+    VP  
Sbjct: 72  DAAFATELAFGTLRMQGFYDAVIERAADR--STSTIDSGVLDVLRLGAHQLLGMR-VPTH 128

Query: 125 VIISEYVCIAHDFFYGDEPKFINAVLDKVSRK 156
               + V +A          F+NAV+ ++S +
Sbjct: 129 AAADQTVGLARTVSGAGASGFVNAVMRRISER 160


>gi|298529651|ref|ZP_07017054.1| Fmu (Sun) domain protein [Desulfonatronospira thiodismutans ASO3-1]
 gi|298511087|gb|EFI34990.1| Fmu (Sun) domain protein [Desulfonatronospira thiodismutans ASO3-1]
          Length = 417

 Score = 50.9 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 22/119 (18%), Positives = 41/119 (34%), Gaps = 5/119 (4%)

Query: 37  TTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWS 96
             + +      +   D  LD E      D      + +G +  K  +D +++  L    S
Sbjct: 15  VLDALRPGRDLQMVLDRNLDPEMDLR--DRSLATELAYGYLRYKGRLDFVLNCFLK---S 69

Query: 97  FSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSR 155
            + L   +  ++     E+     +P    +S  V +    F       +NAVL K  R
Sbjct: 70  PAGLSGKIRVLMGLAAYEIFFLERIPDYAAVSRAVALTRKRFGSRMSSLVNAVLRKCCR 128


>gi|289705544|ref|ZP_06501936.1| putative ribosomal RNA small subunit methyltransferase B
           [Micrococcus luteus SK58]
 gi|289557773|gb|EFD51072.1| putative ribosomal RNA small subunit methyltransferase B
           [Micrococcus luteus SK58]
          Length = 543

 Score = 50.9 bits (121), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 18/99 (18%), Positives = 39/99 (39%), Gaps = 3/99 (3%)

Query: 58  ESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIE 117
           ++     D  +   + +G +      D +++ C+       ++D  +   LR G  +L+ 
Sbjct: 93  QARLDRRDAGFATELAYGTLRGLGLYDAILTRCVDR--PLEKIDPPVLDALRLGAHQLLG 150

Query: 118 CHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRK 156
              VP    +   V +           F+NAVL +V+ +
Sbjct: 151 MR-VPAHAALDATVSLVRAEIGAGASGFVNAVLRRVAER 188


>gi|271964331|ref|YP_003338527.1| Fmu, rRNA SAM-dependent methyltransferase:Nop2p [Streptosporangium
           roseum DSM 43021]
 gi|270507506|gb|ACZ85784.1| Fmu, rRNA SAM-dependent methyltransferase:Nop2p [Streptosporangium
           roseum DSM 43021]
          Length = 515

 Score = 50.9 bits (121), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 32/139 (23%), Positives = 49/139 (35%), Gaps = 14/139 (10%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           R  AR AA   L             + E + Y       L  E      D      + +G
Sbjct: 53  RDEARNAAYDLL-----------RAVDERDAYANLLMPALLRERRLSGRDAGLATELAYG 101

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
            +      D +I++C     +   LD  L   +R GV +L++   VP    +   V +  
Sbjct: 102 TLRGLGTYDEVIAACSDR--APEDLDPPLLDAIRLGVHQLLKTR-VPPHAAVGTTVDLVR 158

Query: 136 DFFYGDEPKFINAVLDKVS 154
                   K+ NAVL KV+
Sbjct: 159 LRVGTGASKYANAVLRKVA 177


>gi|227833013|ref|YP_002834720.1| putative tRNA and rRNA cytosine-C5-methylase [Corynebacterium
           aurimucosum ATCC 700975]
 gi|227454029|gb|ACP32782.1| putative tRNA and rRNA cytosine-C5-methylase [Corynebacterium
           aurimucosum ATCC 700975]
          Length = 531

 Score = 50.9 bits (121), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 27/169 (15%), Positives = 59/169 (34%), Gaps = 24/169 (14%)

Query: 6   NKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVE---SVYL 62
           N++D   +     AR   V      D+      E++   E     A+  L      +   
Sbjct: 54  NRRDGHSASFMSAARRCGV------DVPRAVAFEVLQRVEADDAFANLTLPKAVSANNLS 107

Query: 63  HVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVP 122
             D  +   + +G +  +  +D +I++C +       +   + + LR G  +++    V 
Sbjct: 108 GRDAAFSTELTYGTLRSEGVLDAVIATCASRG--LEAIAPDVLTALRMGTYQVLYTR-VE 164

Query: 123 VEVIISEYVCIAHDFFYGDEPKFINAV------------LDKVSRKEEI 159
               +   V +     +     F N +            LDK++ +EE+
Sbjct: 165 AHAAVDTTVRLVEAAGHEKAKGFANGIMRTITRTPAHEWLDKLAPQEEV 213


>gi|123965723|ref|YP_001010804.1| Sun protein (Fmu protein) [Prochlorococcus marinus str. MIT 9515]
 gi|123200089|gb|ABM71697.1| Sun protein (Fmu protein) [Prochlorococcus marinus str. MIT 9515]
          Length = 437

 Score = 50.9 bits (121), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 18/99 (18%), Positives = 40/99 (40%), Gaps = 2/99 (2%)

Query: 60  VYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECH 119
            +  +D+ +   +  G +  ++ +D  I   +++     +    L  +L  G+ +L++  
Sbjct: 36  EFNSLDIAFITELSFGCIRYRKFLDTWID-HISKLSHQKQ-PPKLRWLLHIGLYQLLKMD 93

Query: 120 SVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEE 158
            +P    IS  V +A           +NA+L    R  E
Sbjct: 94  KIPFPAAISSTVEVAKRTDLKGLAGTVNAILRNTVRNIE 132


>gi|152966927|ref|YP_001362711.1| Fmu (Sun) domain protein [Kineococcus radiotolerans SRS30216]
 gi|151361444|gb|ABS04447.1| Fmu (Sun) domain protein [Kineococcus radiotolerans SRS30216]
          Length = 486

 Score = 50.9 bits (121), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 28/137 (20%), Positives = 53/137 (38%), Gaps = 14/137 (10%)

Query: 18  IARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVM 77
            +R  A + L        S  +  +     R   D  L+        D  +   + +GV+
Sbjct: 28  ASRKVAYEVL-----RAVSADDAYANLVLPRMLRDRRLNG------RDAAFATELAYGVL 76

Query: 78  DRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDF 137
             +   D L+++ +      + LD  +  +LR G+ +L+    VP    ++  V +A + 
Sbjct: 77  RGRGTYDALLATLVDR--PLAELDAGVLDVLRMGLHQLLAMR-VPDHAAVATSVALARNV 133

Query: 138 FYGDEPKFINAVLDKVS 154
             G     INAVL   +
Sbjct: 134 VGGGPAGLINAVLRSAA 150


>gi|241206925|ref|YP_002978021.1| Fmu (Sun) domain protein [Rhizobium leguminosarum bv. trifolii
           WSM1325]
 gi|240860815|gb|ACS58482.1| Fmu (Sun) domain protein [Rhizobium leguminosarum bv. trifolii
           WSM1325]
          Length = 460

 Score = 50.9 bits (121), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 22/111 (19%), Positives = 43/111 (38%), Gaps = 10/111 (9%)

Query: 63  HVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVP 122
             D    R I++  +     ID  I+  L            L  +L  G  +++    VP
Sbjct: 65  ESDRALVRAILNTTLRHLPRIDAAIAGLLDS--PLPEGARALHHVLAIGAAQILY-LDVP 121

Query: 123 VEVIISEYVCIAHDFFYGDEPKF---INAVLDKVSRKEE--IKRSGCVSAI 168
               +   V  A+        +F   +NA+L ++ R++E  + + G V+ +
Sbjct: 122 DHSAVDLAVEQAN--LDPRNRRFAKLVNAILRRLGREKEQVLDQIGKVAPM 170


>gi|262182499|ref|ZP_06041920.1| putative tRNA and rRNA cytosine-C5-methylase [Corynebacterium
           aurimucosum ATCC 700975]
          Length = 468

 Score = 50.9 bits (121), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 25/158 (15%), Positives = 54/158 (34%), Gaps = 24/158 (15%)

Query: 17  GIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVE---SVYLHVDLEWFRVII 73
             AR   V      D+      E++   E     A+  L      +     D  +   + 
Sbjct: 2   SAARRCGV------DVPRAVAFEVLQRVEADDAFANLTLPKAVSANNLSGRDAAFSTELT 55

Query: 74  HGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCI 133
           +G +  +  +D +I++C +       +   + + LR G  +++    V     +   V +
Sbjct: 56  YGTLRSEGVLDAVIATCASRG--LEAIAPDVLTALRMGTYQVLYTR-VEAHAAVDTTVRL 112

Query: 134 AHDFFYGDEPKFINAV------------LDKVSRKEEI 159
                +     F N +            LDK++ +EE+
Sbjct: 113 VEAAGHEKAKGFANGIMRTITRTPAHEWLDKLAPQEEV 150


>gi|160915468|ref|ZP_02077679.1| hypothetical protein EUBDOL_01476 [Eubacterium dolichum DSM 3991]
 gi|158432588|gb|EDP10877.1| hypothetical protein EUBDOL_01476 [Eubacterium dolichum DSM 3991]
          Length = 415

 Score = 50.9 bits (121), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 23/109 (21%), Positives = 41/109 (37%), Gaps = 9/109 (8%)

Query: 63  HVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILR-AGVLELIECHSV 121
             D      I++G +   + +     S + ++           ++L    V +L+    +
Sbjct: 34  PKDKALVTQIVYGTLQNYRLVRYQWQSYVKKE------PCKEVALLLDMSVYQLLYMDKM 87

Query: 122 PVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRSGCVSAITQ 170
           P   +I E V I     +      +NAVL +V R    KR    +AI Q
Sbjct: 88  PAYAVIDEAVRITKKNIHPRFSALVNAVLRQVERNG--KRELEGNAIEQ 134


>gi|262370763|ref|ZP_06064087.1| 16S rRNA m5C967 SAM-dependent methyltransferase [Acinetobacter
           johnsonii SH046]
 gi|262314125|gb|EEY95168.1| 16S rRNA m5C967 SAM-dependent methyltransferase [Acinetobacter
           johnsonii SH046]
          Length = 434

 Score = 50.5 bits (120), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 25/138 (18%), Positives = 51/138 (36%), Gaps = 25/138 (18%)

Query: 21  LAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRK 80
           L AVQ        G S   ++ ++               +    D   +  ++ G + + 
Sbjct: 22  LLAVQ-------NGQSLASVLQQHMA-------------IVSDKDRALYHELVLGCLRQW 61

Query: 81  QHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYG 140
             +  +    LT+       + ++ + L  G+ +L+ C  V     ISE V  A      
Sbjct: 62  HALKQVTLPLLTK--PLE--NQVVETCLYVGLYQLL-CTRVAAHAAISETVEAAKQLGME 116

Query: 141 DEPKFINAVLDKVSRKEE 158
           +    +NA+L + +R+ E
Sbjct: 117 NLSGVVNAILRRATRETE 134


>gi|310659156|ref|YP_003936877.1| rsmb [Clostridium sticklandii DSM 519]
 gi|308825934|emb|CBH21972.1| RsmB [Clostridium sticklandii]
          Length = 444

 Score = 50.5 bits (120), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 25/154 (16%), Positives = 55/154 (35%), Gaps = 14/154 (9%)

Query: 17  GIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGV 76
             AR  A   +Y            +   + Y   +  +   ++   + +  +   +++G 
Sbjct: 13  NNARKIAYDIIY-----------DVKYNKAYSNISINKAFNKNTIDNREKGFVTELVYGA 61

Query: 77  MDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHD 136
           + R  ++D  I   L      S+L     ++L  G  +L    SV     + E V +   
Sbjct: 62  LSRLIYLDYQIEQFLDM--RASKLSKQAKTVLEMGFYQLEFMDSVSDFASVDESVKLIKK 119

Query: 137 FFYGDEPKFINAVLDKVSRKEEIKRSGCVSAITQ 170
                    INAV+ K  ++ + + +  +S   +
Sbjct: 120 -VDNRSAGIINAVMRKRVKEGKAEYTDKISDKAK 152


>gi|190893964|ref|YP_001980506.1| RNA methyltransferase - sun protein [Rhizobium etli CIAT 652]
 gi|190699243|gb|ACE93328.1| probable RNA methyltransferase - sun protein [Rhizobium etli CIAT
           652]
          Length = 464

 Score = 50.5 bits (120), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 21/99 (21%), Positives = 38/99 (38%), Gaps = 8/99 (8%)

Query: 63  HVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVP 122
             D    R I++  +     ID  I+S L            L  +L  G  +++    VP
Sbjct: 69  ESDRALVRAILNTTLRHLPRIDAAIASLLES--PLPEGARALHHVLSIGAAQILY-LDVP 125

Query: 123 VEVIISEYVCIAHDFFYGDEPKF---INAVLDKVSRKEE 158
               +   V  A+        +F   +NAVL ++ R+++
Sbjct: 126 DHSAVDLAVEQANQ--DPRNRRFAKLVNAVLRRLGREKD 162


>gi|297184029|gb|ADI20149.1| tRNA and rRNA cytosine-c5-methylases [uncultured alpha
           proteobacterium EB080_L06A09]
          Length = 430

 Score = 50.5 bits (120), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 27/139 (19%), Positives = 50/139 (35%), Gaps = 17/139 (12%)

Query: 19  ARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMD 78
           AR AAV+ L            ++ E+       + E  +       +    + +    + 
Sbjct: 8   AREAAVRLL----------HAVLLEHRLLIDIVNGEDSLLIDLEPSERARAQSLAMTTLR 57

Query: 79  RKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH-DF 137
               ID+++   LT+K  F+     L +ILR    E++    +     +   V +A    
Sbjct: 58  NLGPIDIVLKKYLTKKPPFA-----LLNILRVSSAEML-VDGIAAHAAVDSAVTMAKRKH 111

Query: 138 FYGDEPKFINAVLDKVSRK 156
                    NAVL KV+ +
Sbjct: 112 KTAHLKDLTNAVLRKVASE 130


>gi|220903300|ref|YP_002478612.1| NusB/RsmB/TIM44 [Desulfovibrio desulfuricans subsp. desulfuricans
           str. ATCC 27774]
 gi|219867599|gb|ACL47934.1| NusB/RsmB/TIM44 [Desulfovibrio desulfuricans subsp. desulfuricans
           str. ATCC 27774]
          Length = 526

 Score = 50.5 bits (120), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 19/94 (20%), Positives = 33/94 (35%), Gaps = 3/94 (3%)

Query: 65  DLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVE 124
           D      +++G +  +  ++ L+   L       R   IL +     V  L+    VP  
Sbjct: 72  DRALCTELVYGCLRTELRLNFLLGRVLPRPQGLPRPMQILLA---LAVYGLLFQDKVPSH 128

Query: 125 VIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEE 158
            ++ E V  A   F     +  N  L  + R  E
Sbjct: 129 AVVYEAVEQARALFGQGLARVANGALRSLQRMGE 162


>gi|119385444|ref|YP_916500.1| Fmu (Sun) domain-containing protein [Paracoccus denitrificans
           PD1222]
 gi|119375211|gb|ABL70804.1| Fmu (Sun) domain protein [Paracoccus denitrificans PD1222]
          Length = 535

 Score = 50.5 bits (120), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 20/86 (23%), Positives = 35/86 (40%), Gaps = 8/86 (9%)

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
           V+ R   +DLL++  L  +        I+  ILR   +E++     P    ++  V +A 
Sbjct: 167 VLRRADRVDLLLAPMLARRPRPE----IMR-ILRLAAVEMLALGEAPHG-AVNAAVALAR 220

Query: 136 DFF--YGDEPKFINAVLDKVSRKEEI 159
                       +NAVL K++   E 
Sbjct: 221 ASGRKGQAAAGMVNAVLRKIAGAAEA 246


>gi|239904671|ref|YP_002951409.1| rRNA (cytosine-C(5)-)-methyltransferase [Desulfovibrio magneticus
           RS-1]
 gi|239794534|dbj|BAH73523.1| rRNA (cytosine-C(5)-)-methyltransferase [Desulfovibrio magneticus
           RS-1]
          Length = 477

 Score = 50.5 bits (120), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 17/98 (17%), Positives = 36/98 (36%), Gaps = 3/98 (3%)

Query: 57  VESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELI 116
            +S     D      +++G +     +D +++  L    + + + + +  IL     E++
Sbjct: 76  ADSTLDPRDRGLATELVYGYLRLCGRLDYILAQFLK---NPTAVPLAVRRILGLAAYEIL 132

Query: 117 ECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVS 154
            C  VP    +   V               NAVL +V+
Sbjct: 133 HCAKVPAYASVDWAVSAVRKAGGKGLSGMANAVLRRVA 170


>gi|110004340|emb|CAK98678.1| putative ribosomal rna small subunit methyltransferase protein
           [Spiroplasma citri]
          Length = 423

 Score = 50.5 bits (120), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 22/136 (16%), Positives = 50/136 (36%), Gaps = 15/136 (11%)

Query: 18  IARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVM 77
            AR  A       +I      +I ++ +         ++    ++  D      I++G +
Sbjct: 2   QAREVA------WNI----LWKIFAKNKFSNHLLSNIVEQNDNFIDQDKTLIYRIVYGTL 51

Query: 78  DRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDF 137
             K +++ + +  +  K +  +L      +L   + +      +P   I++E V I+   
Sbjct: 52  KNKLYLEYIANQFIESKKTNQKL----QILLWMSIYQFRFLDRIPNYAIVNEAVNISKSV 107

Query: 138 FYGDEPKFINAVLDKV 153
                  FIN  L K+
Sbjct: 108 S-PKYAGFINTTLKKI 122


>gi|83594989|ref|YP_428741.1| tRNA and rRNA cytosine-C5-methylase [Rhodospirillum rubrum ATCC
           11170]
 gi|83577903|gb|ABC24454.1| tRNA and rRNA cytosine-C5-methylase [Rhodospirillum rubrum ATCC
           11170]
          Length = 438

 Score = 50.5 bits (120), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 24/117 (20%), Positives = 45/117 (38%), Gaps = 4/117 (3%)

Query: 39  EIISEYETYRFCADTELDVESVYLHV-DLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSF 97
           +++S    +    D   D  +  L   D  + R++    + R   ++ +I + L      
Sbjct: 14  DLLSAVLDHGRPLDDVFDAATRKLEPRDRAFARLLAATTLRRMGRLEKVIKTFLDR--PL 71

Query: 98  SRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVS 154
            R  +    ILR G  +++     P    ++  V +A           INAVL KV+
Sbjct: 72  PRRAVGAKHILRLGAAQMLF-LDTPPHAAVATSVDVARVRRLAPYAGLINAVLRKVA 127


>gi|291288639|ref|YP_003505455.1| Fmu (Sun) domain protein [Denitrovibrio acetiphilus DSM 12809]
 gi|290885799|gb|ADD69499.1| Fmu (Sun) domain protein [Denitrovibrio acetiphilus DSM 12809]
          Length = 379

 Score = 50.5 bits (120), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 20/116 (17%), Positives = 42/116 (36%), Gaps = 11/116 (9%)

Query: 44  YETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLD-M 102
           ++  +      L  +      +   +R I          I+  +    TE      +   
Sbjct: 10  FDVLKSYYKGVLREDYFEDSAEQRLYRKIYFETFRHLGFIEKCLDKLYTE------MPGP 63

Query: 103 ILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEE 158
            L + L  G  +++    +P    ++E V +       ++  F+NAVL  V R++E
Sbjct: 64  ELRAALALGTCQILFMDDIPDYAAVNESVILVQM----NKRSFVNAVLRNVGRRKE 115


>gi|298346829|ref|YP_003719516.1| 16S rRNA m(5)C 967 methyltransferase [Mobiluncus curtisii ATCC
           43063]
 gi|298236890|gb|ADI68022.1| 16S rRNA m(5)C 967 methyltransferase [Mobiluncus curtisii ATCC
           43063]
          Length = 470

 Score = 50.5 bits (120), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 23/113 (20%), Positives = 44/113 (38%), Gaps = 3/113 (2%)

Query: 41  ISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRL 100
           + +   Y       L   +     D  +   +++G +  +   D +I   L      + L
Sbjct: 4   VDQDHAYANLVLPGLIERARLHRRDAAFATELVYGTLRLQGRYDAIIG--LLSDRDIAAL 61

Query: 101 DMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKV 153
           D  L ++LR G+ ++++   V     +   V +A D         +NAVL KV
Sbjct: 62  DSELVTVLRMGIHQILQMR-VEDYAAVDTMVDLARDRLSAGPAGMVNAVLRKV 113


>gi|297622450|ref|YP_003703884.1| Fmu (Sun) domain-containing protein [Truepera radiovictrix DSM
           17093]
 gi|297163630|gb|ADI13341.1| Fmu (Sun) domain protein [Truepera radiovictrix DSM 17093]
          Length = 421

 Score = 50.1 bits (119), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 26/140 (18%), Positives = 54/140 (38%), Gaps = 18/140 (12%)

Query: 18  IARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVM 77
            AR  A+  L ++   G     ++S+                     D  +   +++G +
Sbjct: 2   TARETALSILRRVH-RGAFAAPVLSDALAR-----------GGLSAADRGFVTHLVYGSL 49

Query: 78  DRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDF 137
             +  +D  +   L    + ++L   +   LR G  E +     P   +++E+V I    
Sbjct: 50  RLELALDAQLRPLLQ---NPAKLPPGVLDALRLGAFEALYSG-TPRRAVVNEWVAIVKR- 104

Query: 138 FYGDEPKFINAVLDKV-SRK 156
            +G     +NAVL +V +R+
Sbjct: 105 RHGRLAGLVNAVLRRVEARE 124


>gi|11499905|ref|NP_071149.1| fmu and fmv protein [Archaeoglobus fulgidus DSM 4304]
 gi|2648195|gb|AAB88932.1| fmu and fmv protein [Archaeoglobus fulgidus DSM 4304]
          Length = 437

 Score = 50.1 bits (119), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 25/94 (26%), Positives = 40/94 (42%), Gaps = 8/94 (8%)

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
            + R   ID  + S L +   F  LD    ++LR  V E+     V   +     V IA 
Sbjct: 57  TLKRLNAIDYFLKSTLKK---FDGLDPFTRNLLRIAVYEMKY-KGVHPALATDSAVRIAR 112

Query: 136 DFFYGDEPKFINAVLDKVSRKEEIKRSGCVSAIT 169
           +     +   +NAVL KV  K +I+  G +  ++
Sbjct: 113 ERG---KASLVNAVLRKV-EKLDIQAEGRLKELS 142


>gi|113968373|ref|YP_732166.1| sun protein [Shewanella sp. MR-4]
 gi|113883057|gb|ABI37109.1| sun protein [Shewanella sp. MR-4]
          Length = 429

 Score = 50.1 bits (119), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 26/137 (18%), Positives = 50/137 (36%), Gaps = 15/137 (10%)

Query: 20  RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79
           R  A +A++++   G S +  + E + +            +    D      + +GVM  
Sbjct: 5   RALAAKAIFEVLEKGVSLSVALPEQQKH------------LASGKDKALLAELCYGVMRT 52

Query: 80  KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139
              I+  ++ CL +         I+  +L  G  +L     +P    ISE         +
Sbjct: 53  LPQIEKRVAECLAK--PLKGKQRIIHQLLIVGCYQL-YFTRIPSHAAISETAEACRQLKF 109

Query: 140 GDEPKFINAVLDKVSRK 156
               K +N VL  + R+
Sbjct: 110 EGMVKVVNGVLRNIQRQ 126


>gi|117918492|ref|YP_867684.1| sun protein [Shewanella sp. ANA-3]
 gi|117610824|gb|ABK46278.1| sun protein [Shewanella sp. ANA-3]
          Length = 429

 Score = 50.1 bits (119), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 26/137 (18%), Positives = 50/137 (36%), Gaps = 15/137 (10%)

Query: 20  RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79
           R  A +A++++   G S +  + E + +            +    D      + +GVM  
Sbjct: 5   RALAAKAIFEVLEKGVSLSVALPEQQKH------------LASGKDKALLAELCYGVMRT 52

Query: 80  KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139
              I+  ++ CL +         I+  +L  G  +L     +P    ISE         +
Sbjct: 53  LPQIEKRVAECLAK--PLKGKQRIIHQLLIVGCYQL-YFTRIPSHAAISETAEACRQLKF 109

Query: 140 GDEPKFINAVLDKVSRK 156
               K +N VL  + R+
Sbjct: 110 EGMVKVVNGVLRNIQRQ 126


>gi|120596855|ref|YP_961429.1| sun protein [Shewanella sp. W3-18-1]
 gi|120556948|gb|ABM22875.1| sun protein [Shewanella sp. W3-18-1]
          Length = 429

 Score = 50.1 bits (119), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 28/137 (20%), Positives = 50/137 (36%), Gaps = 15/137 (10%)

Query: 20  RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79
           R  A +A++++   G S +  + + + +            +    D      I +GVM  
Sbjct: 4   RALAAKAIFEVLEKGVSLSVALPDQQKH------------LASGKDKALLAEICYGVMRT 51

Query: 80  KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139
              I+  IS CL +         I+  +L  G  +L     +P    ISE         +
Sbjct: 52  LPQIEKRISECLEK--PLKGKQRIIHQLLIVGCYQL-YFTRIPSHAAISETAEACRQLKF 108

Query: 140 GDEPKFINAVLDKVSRK 156
               K +N VL  + R+
Sbjct: 109 EGMVKVVNGVLRNIQRQ 125


>gi|114045538|ref|YP_736088.1| sun protein [Shewanella sp. MR-7]
 gi|113886980|gb|ABI41031.1| sun protein [Shewanella sp. MR-7]
          Length = 429

 Score = 50.1 bits (119), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 26/137 (18%), Positives = 50/137 (36%), Gaps = 15/137 (10%)

Query: 20  RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79
           R  A +A++++   G S +  + E + +            +    D      + +GVM  
Sbjct: 5   RALAAKAIFEVLEKGVSLSVALPEQQKH------------LASGKDKALLAELCYGVMRT 52

Query: 80  KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139
              I+  ++ CL +         I+  +L  G  +L     +P    ISE         +
Sbjct: 53  LPQIEKRVAECLAK--PLKGKQRIIHQLLIVGCYQL-YFTRIPSHAAISETAEACRQLKF 109

Query: 140 GDEPKFINAVLDKVSRK 156
               K +N VL  + R+
Sbjct: 110 EGMVKVVNGVLRNIQRQ 126


>gi|303326115|ref|ZP_07356558.1| sun protein [Desulfovibrio sp. 3_1_syn3]
 gi|302864031|gb|EFL86962.1| sun protein [Desulfovibrio sp. 3_1_syn3]
          Length = 464

 Score = 50.1 bits (119), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 23/123 (18%), Positives = 41/123 (33%), Gaps = 5/123 (4%)

Query: 33  IGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLT 92
            G S  E +++  +            +V    +      +++G +  +  I  L+   L 
Sbjct: 31  SGLSAQEALADALSGPLGEG--GKAVAVLPQQERHLCSELVYGCLRAEIRIAYLLGRVLP 88

Query: 93  EKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDK 152
           +     RL + L  IL   V  L+    VP    +   V  A   F     +  N  L  
Sbjct: 89  K---PERLPLPLRHILELAVYALLFQERVPDHAAVHSAVAQAERLFGRSLARVTNGALRS 145

Query: 153 VSR 155
           + R
Sbjct: 146 IQR 148


>gi|20093882|ref|NP_613729.1| tRNA/rRNA cytosine-C5-methylase [Methanopyrus kandleri AV19]
 gi|19886817|gb|AAM01659.1| tRNA/rRNA cytosine-C5-methylase [Methanopyrus kandleri AV19]
          Length = 452

 Score = 50.1 bits (119), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 18/74 (24%), Positives = 31/74 (41%), Gaps = 2/74 (2%)

Query: 77  MDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHD 136
           M R + +D  + + +        LD  + + LR G  E+     V   +  +E V I  +
Sbjct: 54  MKRLRTVDAFLEATI-RNAKLFDLDPWVRNALRVGTFEMKFN-DVKPAIATNEAVKIVVE 111

Query: 137 FFYGDEPKFINAVL 150
                  +F+NAVL
Sbjct: 112 CVGEGPARFVNAVL 125


>gi|295130755|ref|YP_003581418.1| putative ribosomal RNA small subunit methyltransferase B
           [Propionibacterium acnes SK137]
 gi|291377004|gb|ADE00859.1| putative ribosomal RNA small subunit methyltransferase B
           [Propionibacterium acnes SK137]
          Length = 458

 Score = 50.1 bits (119), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 25/156 (16%), Positives = 55/156 (35%), Gaps = 22/156 (14%)

Query: 1   MTIQDNKKDLKLSHRRGI--ARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVE 58
           MT + ++K      RR    AR  A  AL  ++  G      ++++              
Sbjct: 1   MTQRVHQK------RRKADPARRLAYSALLAVETHGAYANLALADHLR-----------A 43

Query: 59  SVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIEC 118
           +     D  +   ++ G        D +I +      + ++L   +  +LR    +++  
Sbjct: 44  AKLTGRDAAFATELVDGTSRGTGTWDRIIEAASCR--APAKLQPGVRVVLRMAAHQILAM 101

Query: 119 HSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVS 154
             VP    ++  V +A           +NA+  ++S
Sbjct: 102 R-VPTRAAVASSVDLAGQVIGERVTGLVNAISRRIS 136


>gi|113460188|ref|YP_718245.1| ribosomal RNA small subunit methyltransferase B [Haemophilus somnus
           129PT]
 gi|112822231|gb|ABI24320.1| 16S rRNA m(5)C-967 methyltransferase [Haemophilus somnus 129PT]
          Length = 462

 Score = 49.7 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 24/142 (16%), Positives = 51/142 (35%), Gaps = 16/142 (11%)

Query: 17  GIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGV 76
              R+ A + + Q+ + G S + ++ E              +S     D    + I  G+
Sbjct: 22  RSVRVLAAEVILQVLVQGKSLSTLLPE-------------QQSAVKPQDFPLLQEICFGI 68

Query: 77  MDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHD 136
                 ++ +I   L +         I+  +L  G+ +++    +P    + E V     
Sbjct: 69  CRVLPRLERIIQLLLDK--PLKGKTRIVHCLLLVGLYQILYTR-IPAHAAVDEVVSATKS 125

Query: 137 FFYGDEPKFINAVLDKVSRKEE 158
                    +NAVL +  R++E
Sbjct: 126 LKSDSFRGLLNAVLRRFLREQE 147


>gi|327330430|gb|EGE72179.1| sun protein [Propionibacterium acnes HL097PA1]
          Length = 458

 Score = 49.7 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 25/156 (16%), Positives = 55/156 (35%), Gaps = 22/156 (14%)

Query: 1   MTIQDNKKDLKLSHRRGI--ARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVE 58
           MT + ++K      RR    AR  A  AL  ++  G      ++++              
Sbjct: 1   MTQRVHQK------RRKADPARRLAYSALLAVETHGAYANLALADHLR-----------A 43

Query: 59  SVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIEC 118
           +     D  +   ++ G        D +I +      + ++L   +  +LR    +++  
Sbjct: 44  AKLTGRDAAFATELVDGTSRGTGTWDRIIEAASCR--APAKLQPGVRVVLRMAAHQILAM 101

Query: 119 HSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVS 154
             VP    ++  V +A           +NA+  ++S
Sbjct: 102 R-VPTRAAVASSVDLAGQVIGERVTGLVNAISRRIS 136


>gi|297184252|gb|ADI20370.1| tRNA and rRNA cytosine-c5-methylases [uncultured alpha
           proteobacterium EB080_L27A02]
          Length = 430

 Score = 49.7 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 26/139 (18%), Positives = 48/139 (34%), Gaps = 17/139 (12%)

Query: 19  ARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMD 78
           AR AAV+ L            ++ E        + E  +       +    + +    + 
Sbjct: 8   AREAAVRLL----------HAVLLERRLLIDIVNGEDSLLIDLEPSERARAQSLAMTTLR 57

Query: 79  RKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH-DF 137
               ID ++   LT++  F+     L +ILR    E++    +     +   V +A    
Sbjct: 58  NLGPIDFVLQKYLTKQTPFA-----LLNILRVSAAEML-VDGIAAHAAVDSAVTMAKRRH 111

Query: 138 FYGDEPKFINAVLDKVSRK 156
                    NAVL KV+ +
Sbjct: 112 KTAHLKDLANAVLRKVASE 130


>gi|170718224|ref|YP_001785246.1| sun protein [Haemophilus somnus 2336]
 gi|168826353|gb|ACA31724.1| sun protein [Haemophilus somnus 2336]
          Length = 462

 Score = 49.7 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 24/142 (16%), Positives = 51/142 (35%), Gaps = 16/142 (11%)

Query: 17  GIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGV 76
              R+ A + + Q+ + G S + ++ E              +S     D    + I  G+
Sbjct: 22  RSVRVLAAEVILQVLVQGKSLSTLLPE-------------QQSAVKPQDFPLLQEICFGI 68

Query: 77  MDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHD 136
                 ++ +I   L +         I+  +L  G+ +++    +P    + E V     
Sbjct: 69  CRVLPRLERIIQLLLDK--PLKGKTRIVHCLLLVGLYQILYTR-IPAHAAVDEVVSATKS 125

Query: 137 FFYGDEPKFINAVLDKVSRKEE 158
                    +NAVL +  R++E
Sbjct: 126 LKSDSFRGLLNAVLRRFLREQE 147


>gi|50842676|ref|YP_055903.1| tRNA/rRNA cytosine-C5-methylase [Propionibacterium acnes KPA171202]
 gi|289428602|ref|ZP_06430286.1| putative ribosomal RNA small subunit methyltransferase B
           [Propionibacterium acnes J165]
 gi|50840278|gb|AAT82945.1| tRNA/rRNA cytosine-C5-methylase [Propionibacterium acnes KPA171202]
 gi|289158296|gb|EFD06515.1| putative ribosomal RNA small subunit methyltransferase B
           [Propionibacterium acnes J165]
 gi|313764281|gb|EFS35645.1| putative ribosomal RNA small subunit methyltransferase B
           [Propionibacterium acnes HL013PA1]
 gi|313772001|gb|EFS37967.1| putative ribosomal RNA small subunit methyltransferase B
           [Propionibacterium acnes HL074PA1]
 gi|313802083|gb|EFS43317.1| putative ribosomal RNA small subunit methyltransferase B
           [Propionibacterium acnes HL110PA2]
 gi|313807694|gb|EFS46181.1| putative ribosomal RNA small subunit methyltransferase B
           [Propionibacterium acnes HL087PA2]
 gi|313810201|gb|EFS47922.1| putative ribosomal RNA small subunit methyltransferase B
           [Propionibacterium acnes HL083PA1]
 gi|313812771|gb|EFS50485.1| putative ribosomal RNA small subunit methyltransferase B
           [Propionibacterium acnes HL025PA1]
 gi|313816188|gb|EFS53902.1| putative ribosomal RNA small subunit methyltransferase B
           [Propionibacterium acnes HL059PA1]
 gi|313818731|gb|EFS56445.1| putative ribosomal RNA small subunit methyltransferase B
           [Propionibacterium acnes HL046PA2]
 gi|313820501|gb|EFS58215.1| putative ribosomal RNA small subunit methyltransferase B
           [Propionibacterium acnes HL036PA1]
 gi|313822693|gb|EFS60407.1| putative ribosomal RNA small subunit methyltransferase B
           [Propionibacterium acnes HL036PA2]
 gi|313825373|gb|EFS63087.1| putative ribosomal RNA small subunit methyltransferase B
           [Propionibacterium acnes HL063PA1]
 gi|313827669|gb|EFS65383.1| putative ribosomal RNA small subunit methyltransferase B
           [Propionibacterium acnes HL063PA2]
 gi|313830532|gb|EFS68246.1| putative ribosomal RNA small subunit methyltransferase B
           [Propionibacterium acnes HL007PA1]
 gi|313833568|gb|EFS71282.1| putative ribosomal RNA small subunit methyltransferase B
           [Propionibacterium acnes HL056PA1]
 gi|313838904|gb|EFS76618.1| putative ribosomal RNA small subunit methyltransferase B
           [Propionibacterium acnes HL086PA1]
 gi|314915270|gb|EFS79101.1| putative ribosomal RNA small subunit methyltransferase B
           [Propionibacterium acnes HL005PA4]
 gi|314918180|gb|EFS82011.1| putative ribosomal RNA small subunit methyltransferase B
           [Propionibacterium acnes HL050PA1]
 gi|314920256|gb|EFS84087.1| putative ribosomal RNA small subunit methyltransferase B
           [Propionibacterium acnes HL050PA3]
 gi|314925043|gb|EFS88874.1| putative ribosomal RNA small subunit methyltransferase B
           [Propionibacterium acnes HL036PA3]
 gi|314931779|gb|EFS95610.1| putative ribosomal RNA small subunit methyltransferase B
           [Propionibacterium acnes HL067PA1]
 gi|314955581|gb|EFS99982.1| putative ribosomal RNA small subunit methyltransferase B
           [Propionibacterium acnes HL027PA1]
 gi|314958076|gb|EFT02179.1| putative ribosomal RNA small subunit methyltransferase B
           [Propionibacterium acnes HL002PA1]
 gi|314960353|gb|EFT04455.1| putative ribosomal RNA small subunit methyltransferase B
           [Propionibacterium acnes HL002PA2]
 gi|314962623|gb|EFT06723.1| putative ribosomal RNA small subunit methyltransferase B
           [Propionibacterium acnes HL082PA1]
 gi|314967512|gb|EFT11611.1| putative ribosomal RNA small subunit methyltransferase B
           [Propionibacterium acnes HL037PA1]
 gi|314973532|gb|EFT17628.1| putative ribosomal RNA small subunit methyltransferase B
           [Propionibacterium acnes HL053PA1]
 gi|314976212|gb|EFT20307.1| putative ribosomal RNA small subunit methyltransferase B
           [Propionibacterium acnes HL045PA1]
 gi|314978627|gb|EFT22721.1| putative ribosomal RNA small subunit methyltransferase B
           [Propionibacterium acnes HL072PA2]
 gi|314983766|gb|EFT27858.1| putative ribosomal RNA small subunit methyltransferase B
           [Propionibacterium acnes HL005PA1]
 gi|314989757|gb|EFT33848.1| putative ribosomal RNA small subunit methyltransferase B
           [Propionibacterium acnes HL005PA3]
 gi|315077839|gb|EFT49890.1| putative ribosomal RNA small subunit methyltransferase B
           [Propionibacterium acnes HL053PA2]
 gi|315080464|gb|EFT52440.1| putative ribosomal RNA small subunit methyltransferase B
           [Propionibacterium acnes HL078PA1]
 gi|315084135|gb|EFT56111.1| putative ribosomal RNA small subunit methyltransferase B
           [Propionibacterium acnes HL027PA2]
 gi|315085478|gb|EFT57454.1| putative ribosomal RNA small subunit methyltransferase B
           [Propionibacterium acnes HL002PA3]
 gi|315088465|gb|EFT60441.1| putative ribosomal RNA small subunit methyltransferase B
           [Propionibacterium acnes HL072PA1]
 gi|315096079|gb|EFT68055.1| putative ribosomal RNA small subunit methyltransferase B
           [Propionibacterium acnes HL038PA1]
 gi|315098708|gb|EFT70684.1| putative ribosomal RNA small subunit methyltransferase B
           [Propionibacterium acnes HL059PA2]
 gi|315101523|gb|EFT73499.1| putative ribosomal RNA small subunit methyltransferase B
           [Propionibacterium acnes HL046PA1]
 gi|315105750|gb|EFT77726.1| putative ribosomal RNA small subunit methyltransferase B
           [Propionibacterium acnes HL030PA1]
 gi|315108670|gb|EFT80646.1| putative ribosomal RNA small subunit methyltransferase B
           [Propionibacterium acnes HL030PA2]
 gi|327326359|gb|EGE68149.1| sun protein [Propionibacterium acnes HL096PA2]
 gi|327331766|gb|EGE73503.1| sun protein [Propionibacterium acnes HL096PA3]
 gi|327443543|gb|EGE90197.1| putative ribosomal RNA small subunit methyltransferase B
           [Propionibacterium acnes HL013PA2]
 gi|327445747|gb|EGE92401.1| putative ribosomal RNA small subunit methyltransferase B
           [Propionibacterium acnes HL043PA2]
 gi|327448270|gb|EGE94924.1| putative ribosomal RNA small subunit methyltransferase B
           [Propionibacterium acnes HL043PA1]
 gi|327450608|gb|EGE97262.1| putative ribosomal RNA small subunit methyltransferase B
           [Propionibacterium acnes HL087PA3]
 gi|327454053|gb|EGF00708.1| putative ribosomal RNA small subunit methyltransferase B
           [Propionibacterium acnes HL083PA2]
 gi|328753311|gb|EGF66927.1| putative ribosomal RNA small subunit methyltransferase B
           [Propionibacterium acnes HL025PA2]
 gi|328754026|gb|EGF67642.1| putative ribosomal RNA small subunit methyltransferase B
           [Propionibacterium acnes HL087PA1]
 gi|328754754|gb|EGF68370.1| putative ribosomal RNA small subunit methyltransferase B
           [Propionibacterium acnes HL020PA1]
 gi|328760679|gb|EGF74245.1| sun protein [Propionibacterium acnes HL099PA1]
 gi|332675599|gb|AEE72415.1| tRNA/rRNA cytosine-C5-methylase [Propionibacterium acnes 266]
          Length = 458

 Score = 49.7 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 25/156 (16%), Positives = 55/156 (35%), Gaps = 22/156 (14%)

Query: 1   MTIQDNKKDLKLSHRRGI--ARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVE 58
           MT + ++K      RR    AR  A  AL  ++  G      ++++              
Sbjct: 1   MTQRVHQK------RRKADPARRLAYSALLAVETHGAYANLALADHLR-----------A 43

Query: 59  SVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIEC 118
           +     D  +   ++ G        D +I +      + ++L   +  +LR    +++  
Sbjct: 44  AKLTGRDAAFATELVDGTSRGTGTWDRIIEAASCR--APAKLQPGVRVVLRMAAHQILAM 101

Query: 119 HSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVS 154
             VP    ++  V +A           +NA+  ++S
Sbjct: 102 R-VPTRAAVASSVDLAGQVIGERVTGLVNAISRRIS 136


>gi|218509188|ref|ZP_03507066.1| probable RNA methyltransferase - sun protein [Rhizobium etli Brasil
           5]
          Length = 250

 Score = 49.7 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 23/111 (20%), Positives = 43/111 (38%), Gaps = 10/111 (9%)

Query: 63  HVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVP 122
             D    R I++  +     ID  I+S L            L  +L  G  +++    VP
Sbjct: 71  ESDRALVRAILNTTLRHLPRIDAAIASLLES--PLPEGARALHHVLSIGAAQILY-LDVP 127

Query: 123 VEVIISEYVCIAHDFFYGDEPKF---INAVLDKVSRKEE--IKRSGCVSAI 168
               +   V  A+        +F   +NAVL ++ R+++  +   G V+ +
Sbjct: 128 DHSAVDLAVEQANQ--DPRNRRFAKLVNAVLRRLGREKDAVLAEIGKVAPM 176


>gi|262282216|ref|ZP_06059985.1| ribosomal RNA small subunit methyltransferase B [Streptococcus sp.
           2_1_36FAA]
 gi|262262670|gb|EEY81367.1| ribosomal RNA small subunit methyltransferase B [Streptococcus sp.
           2_1_36FAA]
          Length = 437

 Score = 49.7 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 30/147 (20%), Positives = 59/147 (40%), Gaps = 19/147 (12%)

Query: 12  LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71
           +  RR  AR  A++ L           E+  +   +   A  +   +      D      
Sbjct: 1   METRRKSARQVALEVL----------EEVFDQ-GAFSNIALNKALKKVQLSQQDKSLVTE 49

Query: 72  IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
           +++G + RK  ++  +S  L E     +LD  L  +L   + +++    +P   +I E V
Sbjct: 50  LVYGTVARKLTLEWYLS-HLIEDR--DKLDSWLYILLLLSLYQMLYLDKIPNHALIHEAV 106

Query: 132 CIAH--DFFYGDEPKFINAVLDKVSRK 156
            +A           KF+NA+L ++ R+
Sbjct: 107 ELAKKRKLGSD---KFVNAILRRIERE 130


>gi|289425301|ref|ZP_06427078.1| putative ribosomal RNA small subunit methyltransferase B
           [Propionibacterium acnes SK187]
 gi|289154279|gb|EFD02967.1| putative ribosomal RNA small subunit methyltransferase B
           [Propionibacterium acnes SK187]
          Length = 458

 Score = 49.7 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 25/156 (16%), Positives = 55/156 (35%), Gaps = 22/156 (14%)

Query: 1   MTIQDNKKDLKLSHRRGI--ARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVE 58
           MT + ++K      RR    AR  A  AL  ++  G      ++++              
Sbjct: 1   MTQRVHQK------RRKADPARRLAYSALLAVETHGAYANLALADHLR-----------A 43

Query: 59  SVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIEC 118
           +     D  +   ++ G        D +I +      + ++L   +  +LR    +++  
Sbjct: 44  AKLTGRDAAFATELVDGTSRGTGTWDRIIEAASCR--APAKLQPGVRVVLRMAAHQILAM 101

Query: 119 HSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVS 154
             VP    ++  V +A           +NA+  ++S
Sbjct: 102 R-VPTRAAVASSVDLAGQVIGERVTGLVNAISRRIS 136


>gi|157149881|ref|YP_001449914.1| sun protein [Streptococcus gordonii str. Challis substr. CH1]
 gi|157074675|gb|ABV09358.1| sun protein [Streptococcus gordonii str. Challis substr. CH1]
          Length = 437

 Score = 49.7 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 30/147 (20%), Positives = 59/147 (40%), Gaps = 19/147 (12%)

Query: 12  LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71
           +  RR  AR  A++ L           E+  +   +   A  +   +      D      
Sbjct: 1   METRRKSARQVALEVL----------EEVFDQ-GAFSNIALNKALKKVQLSQQDKSLVTE 49

Query: 72  IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
           +++G + RK  ++  +S  L E     +LD  L  +L   + +++    +P   +I E V
Sbjct: 50  LVYGTVARKLTLEWYLS-HLIEDR--DKLDSWLYILLLLSLYQMLYLDKIPNHALIHEAV 106

Query: 132 CIAH--DFFYGDEPKFINAVLDKVSRK 156
            +A           KF+NA+L ++ R+
Sbjct: 107 ELAKKRKLGSD---KFVNAILRRIERE 130


>gi|33239874|ref|NP_874816.1| tRNA and rRNA cytosine-C5-methylase [Prochlorococcus marinus subsp.
           marinus str. CCMP1375]
 gi|33237400|gb|AAP99468.1| tRNA and rRNA cytosine-C5-methylase [Prochlorococcus marinus subsp.
           marinus str. CCMP1375]
          Length = 438

 Score = 49.7 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 19/106 (17%), Positives = 42/106 (39%), Gaps = 4/106 (3%)

Query: 64  VDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPV 123
            D      +  G + ++  +D  I  CL +  S  +   +L  +L  G+ ++     +PV
Sbjct: 41  ADRALATELACGAIRQRLVLDCWID-CLAKV-SAEKQPPLLRWLLHVGLYQIFYMDRIPV 98

Query: 124 EVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKR--SGCVSA 167
              ++  V +A           +NA+L +  R  ++ +   G +  
Sbjct: 99  SAAVNTTVELAKKKNLKSLAPVVNAILREAIRARDLGKELPGLIEP 144


>gi|114769580|ref|ZP_01447190.1| ribosomal RNA small subunit methyltransferase B, putative [alpha
           proteobacterium HTCC2255]
 gi|114549285|gb|EAU52167.1| ribosomal RNA small subunit methyltransferase B, putative [alpha
           proteobacterium HTCC2255]
 gi|297183946|gb|ADI20067.1| hypothetical protein [uncultured alpha proteobacterium
           EB080_L11F12]
          Length = 430

 Score = 49.7 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 26/139 (18%), Positives = 48/139 (34%), Gaps = 17/139 (12%)

Query: 19  ARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMD 78
           AR AAV+ L            ++ E        + E  +       +    + +    + 
Sbjct: 8   AREAAVRLL----------HAVLLERRLLIDIVNGEDSLLIDLEPSERARAQSLAMTTLR 57

Query: 79  RKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH-DF 137
               ID ++   LT++  F+     L +ILR    E++    +     +   V +A    
Sbjct: 58  NLGPIDFVLQKYLTKQTPFA-----LLNILRVSAAEML-VDGIAAHAAVDSAVTMAKRRH 111

Query: 138 FYGDEPKFINAVLDKVSRK 156
                    NAVL KV+ +
Sbjct: 112 KTAHLKDLANAVLRKVASE 130


>gi|33860983|ref|NP_892544.1| Sun protein (Fmu protein) [Prochlorococcus marinus subsp. pastoris
           str. CCMP1986]
 gi|33639715|emb|CAE18885.1| Sun protein (Fmu protein) [Prochlorococcus marinus subsp. pastoris
           str. CCMP1986]
          Length = 437

 Score = 49.7 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 22/101 (21%), Positives = 43/101 (42%), Gaps = 2/101 (1%)

Query: 60  VYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECH 119
            +  +D+ +   +  G +  ++ +DL I    T K S ++    L  +L  G+ +L++  
Sbjct: 36  EFNSLDIAFITELSFGCIRYRKFLDLWIDH--TSKLSHTKQPPKLRWLLHIGLYQLLKMD 93

Query: 120 SVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIK 160
            +P    IS  V +A           +NA+L    R  E +
Sbjct: 94  KIPFSAAISSTVEVAKKTDLKGLAGTVNAILRNTVRHIEKE 134


>gi|314987947|gb|EFT32038.1| putative ribosomal RNA small subunit methyltransferase B
           [Propionibacterium acnes HL005PA2]
          Length = 458

 Score = 49.7 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 25/156 (16%), Positives = 55/156 (35%), Gaps = 22/156 (14%)

Query: 1   MTIQDNKKDLKLSHRRGI--ARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVE 58
           MT + ++K      RR    AR  A  AL  ++  G      ++++              
Sbjct: 1   MTQRVHQK------RRKADPARRLAYSALLAVETHGAYANLALADHLR-----------A 43

Query: 59  SVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIEC 118
           +     D  +   ++ G        D +I +      + ++L   +  +LR    +++  
Sbjct: 44  AKLTGRDAAFATELVDGTSRGTGTWDRIIEAASCR--APAKLQPGVRVVLRMAAHQILAM 101

Query: 119 HSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVS 154
             VP    ++  V +A           +NA+  ++S
Sbjct: 102 R-VPTRAAVASSVDLAGQVIGERVTGLVNAISRRIS 136


>gi|91791391|ref|YP_561042.1| sun protein [Shewanella denitrificans OS217]
 gi|91713393|gb|ABE53319.1| sun protein [Shewanella denitrificans OS217]
          Length = 428

 Score = 49.7 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 23/93 (24%), Positives = 37/93 (39%), Gaps = 3/93 (3%)

Query: 65  DLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVE 124
           D      + +GVM +   +D  +S CL +   F     IL  +L  G  +L     +P  
Sbjct: 38  DKALLAELCYGVMRQLPQLDKCVSDCLAK--PFKGKQRILHQLLLVGCYQL-YFTRIPSH 94

Query: 125 VIISEYVCIAHDFFYGDEPKFINAVLDKVSRKE 157
             +SE         +    K +N VL  + R+E
Sbjct: 95  AAVSETAEACRQLKFDGLVKVVNGVLRNIQRQE 127


>gi|297620390|ref|YP_003708527.1| putative ribosomal RNA small subunit methyltransferase B [Waddlia
           chondrophila WSU 86-1044]
 gi|297375691|gb|ADI37521.1| putative ribosomal RNA small subunit methyltransferase B [Waddlia
           chondrophila WSU 86-1044]
          Length = 421

 Score = 49.3 bits (117), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 21/89 (23%), Positives = 38/89 (42%), Gaps = 2/89 (2%)

Query: 65  DLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVE 124
           D    R + +G       +D  ++  L +K   + L +    + R G+ +      +P+ 
Sbjct: 44  DYHLAREVAYGTTRMALALD-HLALQLADKKKLA-LKLREKILFRMGLYQFHYMDKIPLY 101

Query: 125 VIISEYVCIAHDFFYGDEPKFINAVLDKV 153
            I+ E + IA    +    KF+NA L KV
Sbjct: 102 AIVDETIKIAKIHCHESFVKFLNACLRKV 130


>gi|282853850|ref|ZP_06263187.1| putative ribosomal RNA small subunit methyltransferase B
           [Propionibacterium acnes J139]
 gi|282583303|gb|EFB88683.1| putative ribosomal RNA small subunit methyltransferase B
           [Propionibacterium acnes J139]
 gi|314923543|gb|EFS87374.1| putative ribosomal RNA small subunit methyltransferase B
           [Propionibacterium acnes HL001PA1]
 gi|314966589|gb|EFT10688.1| putative ribosomal RNA small subunit methyltransferase B
           [Propionibacterium acnes HL082PA2]
 gi|314981514|gb|EFT25608.1| putative ribosomal RNA small subunit methyltransferase B
           [Propionibacterium acnes HL110PA3]
 gi|315092178|gb|EFT64154.1| putative ribosomal RNA small subunit methyltransferase B
           [Propionibacterium acnes HL110PA4]
 gi|315092889|gb|EFT64865.1| putative ribosomal RNA small subunit methyltransferase B
           [Propionibacterium acnes HL060PA1]
 gi|315103589|gb|EFT75565.1| putative ribosomal RNA small subunit methyltransferase B
           [Propionibacterium acnes HL050PA2]
 gi|327327412|gb|EGE69188.1| sun protein [Propionibacterium acnes HL103PA1]
          Length = 458

 Score = 49.3 bits (117), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 22/147 (14%), Positives = 51/147 (34%), Gaps = 17/147 (11%)

Query: 11  KLSHRRGIA---RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLE 67
           +L  +R  A   R  A  AL  ++  G      ++++              +     D  
Sbjct: 4   RLHQKRRKADPARRLAYSALLAVETQGAYANLALADHLR-----------AAKLTGRDAA 52

Query: 68  WFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVII 127
           +   ++ G        D +I +      + ++L   +  +LR    +++    VP    +
Sbjct: 53  FATELVDGTSRGTGTWDRIIEAASCR--APAKLQPGVRVVLRMAAHQILAMR-VPTRAAV 109

Query: 128 SEYVCIAHDFFYGDEPKFINAVLDKVS 154
           +  V +A           +NA+  ++S
Sbjct: 110 ASSVDLAGQVIGERVTGLVNAISRRIS 136


>gi|120601083|ref|YP_965483.1| NusB/RsmB/TIM44 [Desulfovibrio vulgaris DP4]
 gi|120561312|gb|ABM27056.1| NusB/RsmB/TIM44 [Desulfovibrio vulgaris DP4]
          Length = 507

 Score = 49.3 bits (117), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 26/143 (18%), Positives = 50/143 (34%), Gaps = 14/143 (9%)

Query: 19  ARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMD 78
           AR  A+ AL  +   G      + +  ++           +     D      +++G + 
Sbjct: 36  ARAGALVALDAVVRAGVDVQAALDDSLSH-----------ASLSRQDAALCTELVYGYLR 84

Query: 79  RKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFF 138
            +  +  L+   L      S+L   + ++L     EL +C  VP    +   V      +
Sbjct: 85  SEIRLSWLVRRFLKA---PSKLPPGVLALLCLAAYELTQCDRVPAYATLDWAVSAVRALY 141

Query: 139 YGDEPKFINAVLDKVSRKEEIKR 161
                +  NAVL  V R  ++ R
Sbjct: 142 GTGVSRLANAVLRNVDRLGDVWR 164


>gi|227530540|ref|ZP_03960589.1| rRNA SAM-dependent methyltransferase RmsB [Lactobacillus vaginalis
           ATCC 49540]
 gi|227349546|gb|EEJ39837.1| rRNA SAM-dependent methyltransferase RmsB [Lactobacillus vaginalis
           ATCC 49540]
          Length = 449

 Score = 49.3 bits (117), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 27/138 (19%), Positives = 46/138 (33%), Gaps = 15/138 (10%)

Query: 19  ARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMD 78
           AR  A  +L           E + + + Y      E          D      I++G + 
Sbjct: 9   ARELAFASL-----------ERVRKTKAYSNLQVDETLRRHELKPADQRLVTTIVYGTLQ 57

Query: 79  RKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFF 138
            +  ++  + S LT      +LD  + ++L     +      VP   +  E + IA    
Sbjct: 58  HQLTLEYWLKS-LTPG---KQLDPWVETLLLTAFYQYNYLDRVPNWAVTDETIKIAKRRG 113

Query: 139 YGDEPKFINAVLDKVSRK 156
                KF+  VL    RK
Sbjct: 114 NPGIRKFVTGVLHSALRK 131


>gi|256847372|ref|ZP_05552818.1| ribosomal RNA small subunit methyltransferase B [Lactobacillus
           coleohominis 101-4-CHN]
 gi|256716036|gb|EEU31011.1| ribosomal RNA small subunit methyltransferase B [Lactobacillus
           coleohominis 101-4-CHN]
          Length = 447

 Score = 49.3 bits (117), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 19/124 (15%), Positives = 40/124 (32%), Gaps = 11/124 (8%)

Query: 36  STTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEK- 94
            T + + +  +Y      E         VD      +++GV+  K  ++  ++  +    
Sbjct: 15  ETLDKVFQRGSYSNLQLNETLKRHQLKEVDKRLVTTLVYGVLQHKLTLEYWLTPLVKRDP 74

Query: 95  --WSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDK 152
             W        + ++L     +      +P      E + IA         KF+  VL  
Sbjct: 75  DSW--------VKTLLMLSFYQYQFMDRIPEWAATDEAIKIAKWRGNPGIRKFVTGVLHS 126

Query: 153 VSRK 156
             R+
Sbjct: 127 FLRQ 130


>gi|23308856|ref|NP_600813.2| tRNA and rRNA cytosine-C5-methylase [Corynebacterium glutamicum
           ATCC 13032]
 gi|21324368|dbj|BAB98992.1| tRNA and rRNA cytosine-C5-methylases [Corynebacterium glutamicum
           ATCC 13032]
          Length = 444

 Score = 49.3 bits (117), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 26/141 (18%), Positives = 47/141 (33%), Gaps = 20/141 (14%)

Query: 20  RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79
           R  A + L           + +   E Y       L  +      D  +   I +G +  
Sbjct: 10  REIAFEVL-----------DRVRTGEAYANLVLPRLLSKHNLSGRDAAFATEITYGTLRN 58

Query: 80  KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA---HD 136
              +D +I +        S +D  +  +LR G  +++    V     +   V +      
Sbjct: 59  VGLLDEVIKAA--SGRELSDIDPEVLDVLRLGAYQVMFTR-VEDHAAVDTSVKMVGGLKK 115

Query: 137 FFYGDEPKFINAVLDKVSRKE 157
           F       F NA+L  ++RKE
Sbjct: 116 F---QATGFANAILRNITRKE 133


>gi|149917223|ref|ZP_01905722.1| ribosomal RNA small subunit methyltransferase B [Plesiocystis
           pacifica SIR-1]
 gi|149821830|gb|EDM81224.1| ribosomal RNA small subunit methyltransferase B [Plesiocystis
           pacifica SIR-1]
          Length = 453

 Score = 49.3 bits (117), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 20/113 (17%), Positives = 42/113 (37%), Gaps = 18/113 (15%)

Query: 12  LSHRRGIA-----RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDL 66
           ++  R  +     R  AV+ L +I+     +  I+SE          +L+        D 
Sbjct: 1   MARPRAKSPLPNPRRLAVRTLREIEQRQGFSNRILSE----------QLERFPDLDPRDR 50

Query: 67  EWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECH 119
                +++GV+  +  +D  + +   +          L +ILR    E++E  
Sbjct: 51  GLITTLVYGVLRHRGRLDAHLDAAADKPHKLK---GELRTILRVAAYEVLELD 100


>gi|145295720|ref|YP_001138541.1| hypothetical protein cgR_1647 [Corynebacterium glutamicum R]
 gi|140845640|dbj|BAF54639.1| hypothetical protein [Corynebacterium glutamicum R]
          Length = 503

 Score = 49.3 bits (117), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 26/141 (18%), Positives = 47/141 (33%), Gaps = 20/141 (14%)

Query: 20  RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79
           R  A + L           + +   E Y       L  +      D  +   I +G +  
Sbjct: 69  REIAFEVL-----------DRVRTGEAYANLVLPRLLSKHNLSGRDAAFATEITYGTLRN 117

Query: 80  KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA---HD 136
              +D +I +        S +D  +  +LR G  +++    V     +   V +      
Sbjct: 118 VGLLDEVIKAA--SGRELSDIDPEVLDVLRLGAYQVMFTR-VEDHAAVDTSVKMVGGLKK 174

Query: 137 FFYGDEPKFINAVLDKVSRKE 157
           F       F NA+L  ++RKE
Sbjct: 175 F---QATGFANAILRNITRKE 192


>gi|260857409|ref|YP_003231300.1| 16S rRNA m5C967 methyltransferase,
           S-adenosyl-L-methionine-dependent [Escherichia coli
           O26:H11 str. 11368]
 gi|260870031|ref|YP_003236433.1| 16S rRNA m5C967 methyltransferase,
           S-adenosyl-L-methionine-dependent [Escherichia coli
           O111:H- str. 11128]
 gi|257756058|dbj|BAI27560.1| 16S rRNA m5C967 methyltransferase,
           S-adenosyl-L-methionine-dependent [Escherichia coli
           O26:H11 str. 11368]
 gi|257766387|dbj|BAI37882.1| 16S rRNA m5C967 methyltransferase,
           S-adenosyl-L-methionine-dependent [Escherichia coli
           O111:H- str. 11128]
 gi|323154126|gb|EFZ40329.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
           EPECa14]
 gi|323179175|gb|EFZ64749.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
           1180]
          Length = 429

 Score = 49.3 bits (117), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 29/147 (19%), Positives = 56/147 (38%), Gaps = 17/147 (11%)

Query: 12  LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71
           +  +R + R  A QA+ QI   G S + I+               ++      D    + 
Sbjct: 1   MKKQRNL-RSMAAQAVEQIVEQGQSLSNIL-------------PPLQQKVSDKDKALLQE 46

Query: 72  IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
           +  GV+     +D LI+  +    +  +    +  ++  GV +L+    +P    ++E V
Sbjct: 47  LCFGVLRTLSQLDWLINKLMARPMTGKQ--RTVHYLIMVGVYQLLYTR-IPPHAALAETV 103

Query: 132 CIAHDFFYGDEPKFINAVLDKVSRKEE 158
             A           IN VL +  R++E
Sbjct: 104 EGAVAIKRPQLKGLINGVLRQFQRQQE 130


>gi|209965632|ref|YP_002298547.1| ribosomal RNA small subunit methyltransferase B [Rhodospirillum
           centenum SW]
 gi|209959098|gb|ACI99734.1| ribosomal RNA small subunit methyltransferase B [Rhodospirillum
           centenum SW]
          Length = 447

 Score = 49.3 bits (117), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 21/93 (22%), Positives = 36/93 (38%), Gaps = 5/93 (5%)

Query: 65  DLEWFRVIIHGVMDRKQHIDLLISSCLTE-KWSFSRLDMILCSILRAGVLELIECHSVPV 123
           D  + R++   V  R   +D L+   L +          +   ILR G  +L+     P 
Sbjct: 61  DRGFVRLLCATVFRRLGQLDALVQGALAKPGQPVK--GPV-QDILRLGAAQLLF-LGTPA 116

Query: 124 EVIISEYVCIAHDFFYGDEPKFINAVLDKVSRK 156
              +   V +A           +NAVL ++SR+
Sbjct: 117 HAAVDTSVELAVARGQTPYKGLVNAVLRRLSRE 149


>gi|62390481|ref|YP_225883.1| 16S rRNA M(5)C 967 methyltransferase [Corynebacterium glutamicum
           ATCC 13032]
 gi|41325818|emb|CAF21607.1| PUTATIVE 16S RRNA M(5)C 967 METHYLTRANSFERASE [Corynebacterium
           glutamicum ATCC 13032]
          Length = 511

 Score = 48.9 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 26/141 (18%), Positives = 47/141 (33%), Gaps = 20/141 (14%)

Query: 20  RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79
           R  A + L           + +   E Y       L  +      D  +   I +G +  
Sbjct: 77  REIAFEVL-----------DRVRTGEAYANLVLPRLLSKHNLSGRDAAFATEITYGTLRN 125

Query: 80  KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA---HD 136
              +D +I +        S +D  +  +LR G  +++    V     +   V +      
Sbjct: 126 VGLLDEVIKAA--SGRELSDIDPEVLDVLRLGAYQVMFTR-VEDHAAVDTSVKMVGGLKK 182

Query: 137 FFYGDEPKFINAVLDKVSRKE 157
           F       F NA+L  ++RKE
Sbjct: 183 F---QATGFANAILRNITRKE 200


>gi|325478752|gb|EGC81863.1| putative ribosomal RNA small subunit methyltransferase B
           [Anaerococcus prevotii ACS-065-V-Col13]
          Length = 426

 Score = 48.9 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 24/123 (19%), Positives = 48/123 (39%), Gaps = 7/123 (5%)

Query: 39  EIISEYETYRFCADTELDVESVYL---HVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKW 95
           E+I    +     D + + E  YL     +L +   +I+GV++ K ++D +I      K 
Sbjct: 5   ELIFNSLSNIIYKDKKSNDEINYLSDKASNLSYITKVIYGVLENKIYLDYMIDKL--SKV 62

Query: 96  SFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSR 155
              ++   +  IL  G+  +           + + V +           F+NA+L    R
Sbjct: 63  KLRKIHKNVLLILEIGIYNI-HFLETKDYATVDKLVDLTKK-KNKRSAGFVNAILRNFIR 120

Query: 156 KEE 158
            E+
Sbjct: 121 NEK 123


>gi|46581764|ref|YP_012572.1| sun protein [Desulfovibrio vulgaris str. Hildenborough]
 gi|46451187|gb|AAS97832.1| sun protein [Desulfovibrio vulgaris str. Hildenborough]
 gi|311232323|gb|ADP85177.1| Fmu (Sun) domain protein [Desulfovibrio vulgaris RCH1]
          Length = 507

 Score = 48.9 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 26/143 (18%), Positives = 49/143 (34%), Gaps = 14/143 (9%)

Query: 19  ARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMD 78
           AR  A+ AL  +   G      + +  ++           +     D      +++G + 
Sbjct: 36  ARAGALVALDAVVRAGVDVQAALDDSLSH-----------ASLSRQDAALCTELVYGYLR 84

Query: 79  RKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFF 138
            +  +  L+   L      S+L   + ++L     EL +C  VP    +   V      +
Sbjct: 85  SEIRLSWLVRRFLKA---PSKLPPGVLALLCLAAYELTQCDRVPAYATLDWAVSAVRALY 141

Query: 139 YGDEPKFINAVLDKVSRKEEIKR 161
                +  NAVL  V R  +  R
Sbjct: 142 GTGVSRLANAVLRNVDRLGDAWR 164


>gi|152994058|ref|YP_001338893.1| sun protein [Marinomonas sp. MWYL1]
 gi|150834982|gb|ABR68958.1| sun protein [Marinomonas sp. MWYL1]
          Length = 462

 Score = 48.9 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 30/157 (19%), Positives = 58/157 (36%), Gaps = 16/157 (10%)

Query: 2   TIQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVY 61
           +   N      S  +  AR  A++ +         T  ++ +       A  +LDV S +
Sbjct: 6   SFPSNTSQSSKSTGQQSARQVAIKVI---------TNILLQQGSLSTQLARHQLDVASEH 56

Query: 62  LHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSV 121
             +     + +  GV  +   ++  I+  L     F   D  L ++L  G+ +L    + 
Sbjct: 57  APM----LKELCFGVCRQYPRLNS-IALHLLAH-PFEEKDTDLYAVLLLGLYQLTYM-NT 109

Query: 122 PVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEE 158
           P    ++E V            K +NAVL +  R+ +
Sbjct: 110 PDHAAVNETVEACRILNKDWATKLMNAVLRRYQREAD 146


>gi|288904707|ref|YP_003429928.1| RNA-binding Sun protein [Streptococcus gallolyticus UCN34]
 gi|288731432|emb|CBI12984.1| putative RNA-binding Sun protein [Streptococcus gallolyticus UCN34]
          Length = 440

 Score = 48.9 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 28/143 (19%), Positives = 60/143 (41%), Gaps = 15/143 (10%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           +  AR  A+  L           E + E   Y   A  +    +     D      I++G
Sbjct: 6   KNQARGLALLVL-----------ENVFEDGAYSNIALNQELSHTTLTPKDKSLVTEIVYG 54

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
            + RK  ++  ++  + ++    +LD  +  +L   + +L+    +P   ++++ V IA 
Sbjct: 55  TVARKITLEWYLAHYIKDR---DKLDSWVYYLLMLSLYQLLYLDKIPAHAVVNDAVNIAK 111

Query: 136 DFFYGDEP-KFINAVLDKVSRKE 157
           +        KF+NAVL + +++E
Sbjct: 112 NRGNKKGAEKFVNAVLRRFTKEE 134


>gi|306830710|ref|ZP_07463875.1| ribosomal RNA small subunit methyltransferase B [Streptococcus
           gallolyticus subsp. gallolyticus TX20005]
 gi|304427218|gb|EFM30325.1| ribosomal RNA small subunit methyltransferase B [Streptococcus
           gallolyticus subsp. gallolyticus TX20005]
          Length = 440

 Score = 48.9 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 28/143 (19%), Positives = 60/143 (41%), Gaps = 15/143 (10%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           +  AR  A+  L           E + E   Y   A  +    +     D      I++G
Sbjct: 6   KNQARGLALLVL-----------ENVFEDGAYSNIALNQELSHTTLSPKDKSLVTEIVYG 54

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
            + RK  ++  ++  + ++    +LD  +  +L   + +L+    +P   ++++ V IA 
Sbjct: 55  TVARKITLEWYLAHYIKDR---DKLDSWVYYLLMLSLYQLLYLDKIPAHAVVNDAVNIAK 111

Query: 136 DFFYGDEP-KFINAVLDKVSRKE 157
           +        KF+NAVL + +++E
Sbjct: 112 NRGNKKGAEKFVNAVLRRFTKEE 134


>gi|87121018|ref|ZP_01076910.1| Fmu, rRNA SAM-dependent methyltransferase [Marinomonas sp. MED121]
 gi|86163856|gb|EAQ65129.1| Fmu, rRNA SAM-dependent methyltransferase [Marinomonas sp. MED121]
          Length = 412

 Score = 48.9 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 15/90 (16%), Positives = 32/90 (35%), Gaps = 3/90 (3%)

Query: 69  FRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIIS 128
            + I  GV      ++      L +   F   D  + + +   + ++      P    ++
Sbjct: 20  LKEICFGVSRHYPKLNSFALHMLDK--PFQEKDYDVYAAILVALYQIDYM-DTPEHAAVN 76

Query: 129 EYVCIAHDFFYGDEPKFINAVLDKVSRKEE 158
           E V  A         K +NA+L +  R+ +
Sbjct: 77  EAVESAKLIGKPWAGKLVNAILRRYLREAD 106


>gi|148241673|ref|YP_001226830.1| ribosomal RNA small subunit methyltransferase B [Synechococcus sp.
           RCC307]
 gi|147849983|emb|CAK27477.1| Ribosomal RNA small subunit methyltransferase B [Synechococcus sp.
           RCC307]
          Length = 454

 Score = 48.9 bits (116), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 22/112 (19%), Positives = 41/112 (36%), Gaps = 2/112 (1%)

Query: 59  SVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIEC 118
           S     D      + +G + +++ +D  +   L  K   ++    L  +L  G+ +++  
Sbjct: 59  SKLSPRDRGLATELAYGAIRQRRRLDGWLD--LLGKVPAAKQPPRLRWLLHVGLQQILLM 116

Query: 119 HSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRSGCVSAITQ 170
             VP    +S  V +A           +N VL    R  E   S  V +  Q
Sbjct: 117 DRVPASAAVSTAVELAKRERLQRLAPVVNGVLRAAVRAVEAGESLPVPSDPQ 168


>gi|313791967|gb|EFS40068.1| putative ribosomal RNA small subunit methyltransferase B
           [Propionibacterium acnes HL110PA1]
 gi|327453314|gb|EGE99968.1| putative ribosomal RNA small subunit methyltransferase B
           [Propionibacterium acnes HL092PA1]
          Length = 458

 Score = 48.6 bits (115), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 23/154 (14%), Positives = 51/154 (33%), Gaps = 18/154 (11%)

Query: 1   MTIQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESV 60
           MT + ++K  K    R  A        Y   +        +  +  Y   A  +    + 
Sbjct: 1   MTQRVHQKRRKADPARRPA--------YSALLA-------VETHGAYANLALADHLRAAK 45

Query: 61  YLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHS 120
               D  +   ++ G        D +I +      + ++L   +  +LR    +++    
Sbjct: 46  LTGRDAAFATELVDGTSRGTGTWDRIIEAASCR--APAKLQPGVRVVLRMAAHQILAMR- 102

Query: 121 VPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVS 154
           VP    ++  V +A           +NA+  ++S
Sbjct: 103 VPTRAAVASSVDLAGQVIGERVTGLVNAISRRIS 136


>gi|262373879|ref|ZP_06067157.1| ribosomal RNA small subunit methyltransferase B [Acinetobacter
           junii SH205]
 gi|262311632|gb|EEY92718.1| ribosomal RNA small subunit methyltransferase B [Acinetobacter
           junii SH205]
          Length = 435

 Score = 48.6 bits (115), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 29/138 (21%), Positives = 55/138 (39%), Gaps = 25/138 (18%)

Query: 21  LAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRK 80
           L AVQ        G S T +++++              ++    D   +  +  G + + 
Sbjct: 22  LLAVQ-------NGQSLTSVLNQHI-------------NMVSERDRGLYHELTLGCLRQW 61

Query: 81  QHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYG 140
             +  +    LT+      L+    S L  G+ +++ C  +PV   ISE V  A    + 
Sbjct: 62  FSLKAITLPLLTKPLDNEALE----SCLYLGLYQIL-CTRIPVHAAISETVNAAKQLGFE 116

Query: 141 DEPKFINAVLDKVSRKEE 158
                +NA+L +VSR+ +
Sbjct: 117 PMSGLVNAILRRVSRETD 134


>gi|294789034|ref|ZP_06754274.1| ribosomal RNA small subunit methyltransferase B [Simonsiella
           muelleri ATCC 29453]
 gi|294483136|gb|EFG30823.1| ribosomal RNA small subunit methyltransferase B [Simonsiella
           muelleri ATCC 29453]
          Length = 421

 Score = 48.6 bits (115), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 24/138 (17%), Positives = 51/138 (36%), Gaps = 18/138 (13%)

Query: 22  AAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQ 81
            A Q L+ ++     + E+      +    + EL  +   +  D+ +      G +    
Sbjct: 9   LATQTLFAVENGKNLSDEL-----AHIIVQNPELSPQDKGMLQDIAYGCQRFSGSLKY-- 61

Query: 82  HIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV-CIAHDFFYG 140
               ++   L +       + +L   L   + +L    + P  V+ +E V  IA     G
Sbjct: 62  ----MLGKLLNK--PID--NKVLEHYLLVALYQLNYTRNAPHAVV-NEAVSNIAKI-GRG 111

Query: 141 DEPKFINAVLDKVSRKEE 158
               F NA+L +  R+++
Sbjct: 112 QYRSFANAILRRFLREQD 129


>gi|223994911|ref|XP_002287139.1| predicted protein [Thalassiosira pseudonana CCMP1335]
 gi|220976255|gb|EED94582.1| predicted protein [Thalassiosira pseudonana CCMP1335]
          Length = 1014

 Score = 48.6 bits (115), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 37/165 (22%), Positives = 59/165 (35%), Gaps = 21/165 (12%)

Query: 4   QDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLH 63
           Q  +K  K  + +  AR  A+ AL              + + T +   D   +       
Sbjct: 498 QPKQKSTKKKNVQPTARSIAINALATSAASNSGAHVNAAAFATQQLEQDEHYNE---MEA 554

Query: 64  VDLEWFRVIIHGVMDRKQHIDLL----ISSCLTEKWSFSRLDMILCSILRAGVLELIECH 119
            D  + R+++  V  R   ID +    I     +K   S L   + + LR GV +L+   
Sbjct: 555 RDRAFARLLVATVERRLGQIDGVLGSCIEKYPPKKGKHSHL---IQATLRTGVAQLLF-L 610

Query: 120 SVPVEVIISEYVC-------IAHDFFYG-DEP--KFINAVLDKVS 154
             P      E V        ++    Y   EP  KF+N V  K+S
Sbjct: 611 DTPPFAANKETVQVLRMHHHLSKTSTYPVPEPMVKFVNGVFRKLS 655


>gi|159902963|ref|YP_001550307.1| Sun protein (Fmu protein) [Prochlorococcus marinus str. MIT 9211]
 gi|159888139|gb|ABX08353.1| Sun protein (Fmu protein) [Prochlorococcus marinus str. MIT 9211]
          Length = 432

 Score = 48.6 bits (115), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 17/102 (16%), Positives = 41/102 (40%), Gaps = 2/102 (1%)

Query: 61  YLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHS 120
              +D      I +G + +++++D  I   L +  +  +    L  +L  G+ ++     
Sbjct: 32  MKAIDKALTTEIAYGSIRQRKYLDSWID-NLAKISALKQ-PPRLRWLLHIGLYQIFLMER 89

Query: 121 VPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRS 162
           +PV  +++  V +A +         +N +L    R  E  + 
Sbjct: 90  IPVSAVVNTTVQLAKNNNLNKLSSVVNGILRNAIRIREAGQG 131


>gi|89056531|ref|YP_511982.1| Fmu (Sun) [Jannaschia sp. CCS1]
 gi|88866080|gb|ABD56957.1| Fmu (Sun) [Jannaschia sp. CCS1]
          Length = 410

 Score = 48.2 bits (114), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 20/99 (20%), Positives = 37/99 (37%), Gaps = 7/99 (7%)

Query: 57  VESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELI 116
           V+      +      +   V+     +D +I    T K         + ++LR G +EL+
Sbjct: 24  VDVPATGAEAARANRLALSVLRNLDAVDAVIKPYTTRKPQIG-----VHNLLRLGAVELL 78

Query: 117 ECHSVPVEVIISEYVCIAHDF-FYGDEPKFINAVLDKVS 154
                   V+ S+ V IA            +NA+L K++
Sbjct: 79  VNGEDAHGVV-SDIVGIAKTQPHTRKASGMVNAILRKIA 116


>gi|114328418|ref|YP_745575.1| 16S rRNA m(5)C 967 methyltransferase [Granulibacter bethesdensis
           CGDNIH1]
 gi|114316592|gb|ABI62652.1| 16S rRNA m(5)C 967 methyltransferase [Granulibacter bethesdensis
           CGDNIH1]
          Length = 452

 Score = 48.2 bits (114), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 21/94 (22%), Positives = 32/94 (34%), Gaps = 6/94 (6%)

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
            + R   ID ++   L  +        +   ILR G   L+     P    +   V +A 
Sbjct: 78  TLRRLGTIDAVLEPFLRREPP----APV-RDILRLGAAGLLF-LDTPPHAAVGTAVDLAR 131

Query: 136 DFFYGDEPKFINAVLDKVSRKEEIKRSGCVSAIT 169
                     INAVL KV+   +   +G  S   
Sbjct: 132 QLRLAPFTGLINAVLRKVATGGQEMLNGLDSPRL 165


>gi|320195380|gb|EFW70007.1| Ribosomal RNA small subunit methyltransferase B [Escherichia coli
           WV_060327]
          Length = 429

 Score = 48.2 bits (114), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 27/147 (18%), Positives = 56/147 (38%), Gaps = 17/147 (11%)

Query: 12  LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71
           +  +R + R  A QA+ Q+   G S + I+               ++      D    + 
Sbjct: 1   MKKQRNL-RSMAAQAIEQVVEQGQSLSNIL-------------PPLQQKVSDKDKALLQE 46

Query: 72  IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
           +  GV+     +D LI+  +    +  +    +  ++  G+ +L+    +P    ++E V
Sbjct: 47  LCFGVLRTLSQLDWLINKLMARPMTGKQ--RTVHYLIMVGLYQLLYTR-IPPHAALAETV 103

Query: 132 CIAHDFFYGDEPKFINAVLDKVSRKEE 158
             A           IN VL +  R++E
Sbjct: 104 EGAVAIKRPQLKGLINGVLRQFQRQQE 130


>gi|240103511|ref|YP_002959820.1| SAM-dependent tRNA/rRNA cytosine-C5 methylase [Thermococcus
           gammatolerans EJ3]
 gi|239911065|gb|ACS33956.1| SAM-dependent tRNA/rRNA cytosine-C5 methylase [Thermococcus
           gammatolerans EJ3]
          Length = 451

 Score = 48.2 bits (114), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 19/88 (21%), Positives = 37/88 (42%), Gaps = 2/88 (2%)

Query: 68  WFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVII 127
                +  +   +  ID +I+S L +      LD  L ++LR G  E+     VP  +  
Sbjct: 49  LAHAYVFEIEKWRAKIDFIINSVL-KGSKVEDLDPYLANLLRIGTFEIHFRK-VPPAIAT 106

Query: 128 SEYVCIAHDFFYGDEPKFINAVLDKVSR 155
              + +  + F     KF+NA++  + +
Sbjct: 107 DSIIRVVKERFDFSRAKFVNALMHSIEK 134


>gi|212225119|ref|YP_002308355.1| tRNA/rRNA cytosine-C5-methylase [Thermococcus onnurineus NA1]
 gi|212010076|gb|ACJ17458.1| tRNA/rRNA cytosine-C5-methylase [Thermococcus onnurineus NA1]
          Length = 450

 Score = 48.2 bits (114), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 19/88 (21%), Positives = 38/88 (43%), Gaps = 2/88 (2%)

Query: 68  WFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVII 127
                +  +   +  ID +I+S L +  +   LD  L ++LR G  E+     VP  +  
Sbjct: 49  LAHAYVFEIEKWRAKIDFIINSVL-KGSTVEDLDPYLANLLRIGTFEIHFRK-VPPAIAT 106

Query: 128 SEYVCIAHDFFYGDEPKFINAVLDKVSR 155
              + +    F     KF+NA++ ++ +
Sbjct: 107 DSIIRVVKGHFDFSRAKFVNALMHEIEK 134


>gi|229140511|ref|ZP_04269066.1| rRNA SAM-dependent methyltransferase RmsB [Bacillus cereus
           BDRD-ST26]
 gi|228643072|gb|EEK99348.1| rRNA SAM-dependent methyltransferase RmsB [Bacillus cereus
           BDRD-ST26]
          Length = 360

 Score = 48.2 bits (114), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 12/42 (28%), Positives = 17/42 (40%)

Query: 115 LIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRK 156
           +I    VP    I E V IA    +      +N VL  + R+
Sbjct: 1   MIYLDRVPERAAIHEAVEIAKRRGHKGIAGMVNGVLRSIQRE 42


>gi|294648678|ref|ZP_06726140.1| Sun family protein [Acinetobacter haemolyticus ATCC 19194]
 gi|292825468|gb|EFF84209.1| Sun family protein [Acinetobacter haemolyticus ATCC 19194]
          Length = 435

 Score = 48.2 bits (114), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 28/138 (20%), Positives = 54/138 (39%), Gaps = 25/138 (18%)

Query: 21  LAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRK 80
           L AVQ        G S   +++++              ++    D   +  +  G + + 
Sbjct: 22  LLAVQ-------NGQSLASVLNQHI-------------NIVSERDRGLYHELTLGCLRQW 61

Query: 81  QHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYG 140
             +  +    LT+      L+    S L  G+ +++ C  +PV   ISE V  A    + 
Sbjct: 62  YSLKAITLPLLTKPLDNEALE----SCLYLGLYQIL-CTRIPVHAAISETVNAAKQLGFE 116

Query: 141 DEPKFINAVLDKVSRKEE 158
                +NA+L +VSR+ +
Sbjct: 117 PMSGLVNAILRRVSRETD 134


>gi|323342155|ref|ZP_08082388.1| rRNA SAM-dependent methyltransferase RmsB [Erysipelothrix
           rhusiopathiae ATCC 19414]
 gi|322464580|gb|EFY09773.1| rRNA SAM-dependent methyltransferase RmsB [Erysipelothrix
           rhusiopathiae ATCC 19414]
          Length = 404

 Score = 48.2 bits (114), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 19/107 (17%), Positives = 39/107 (36%), Gaps = 5/107 (4%)

Query: 58  ESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIE 117
           E      D  +    ++  +     +D      + +K     L   +  +++ G  +  +
Sbjct: 26  ELDLPAQDQAFVSAFVYATLQNSLFLDYQYEDLVDKK-----LPKEVRLVIKMGCAQYFK 80

Query: 118 CHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRSGC 164
              +P   ++SE V +            +NAVL KV  + E + SG 
Sbjct: 81  MDKIPDYALVSETVDLCKAIGKHRYSGVVNAVLKKVIERNEREISGS 127


>gi|87125560|ref|ZP_01081405.1| Fmu, rRNA SAM-dependent methyltransferase [Synechococcus sp.
           RS9917]
 gi|86166860|gb|EAQ68122.1| Fmu, rRNA SAM-dependent methyltransferase [Synechococcus sp.
           RS9917]
          Length = 454

 Score = 48.2 bits (114), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 18/117 (15%), Positives = 37/117 (31%), Gaps = 18/117 (15%)

Query: 59  SVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMI--------LCSILRA 110
           +     D      + +G + R+  +D          W   RL  +        L  +L  
Sbjct: 46  AGLSGADRGLATELAYGAIRRRLWLDA---------W-LDRLGRVPARKQPPRLRWLLHV 95

Query: 111 GVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRSGCVSA 167
           G+ +L     +P    ++  V +A           +N +L    R  +   +  + A
Sbjct: 96  GLYQLFWMERIPAAAAVNTTVELAKHHRLARLAPVVNGLLRAALRARQAGDTLAMPA 152


>gi|313608940|gb|EFR84692.1| transcription antitermination factor NusB [Listeria monocytogenes
          FSL F2-208]
          Length = 57

 Score = 48.2 bits (114), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 17/72 (23%), Positives = 31/72 (43%), Gaps = 16/72 (22%)

Query: 15 RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74
          +R  AR  A+QAL+QI++   S  + I                +++      ++   ++ 
Sbjct: 2  KRREAREKALQALFQIELNEMSLDQAI----------------KNIMEDEQDDYMEKLVE 45

Query: 75 GVMDRKQHIDLL 86
          GVM  K  ID +
Sbjct: 46 GVMANKADIDAI 57


>gi|94985598|ref|YP_604962.1| NusB/RsmB/TIM44 [Deinococcus geothermalis DSM 11300]
 gi|94555879|gb|ABF45793.1| rRNA methyltransferase, sun family protein [Deinococcus
           geothermalis DSM 11300]
          Length = 427

 Score = 48.2 bits (114), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 33/144 (22%), Positives = 55/144 (38%), Gaps = 18/144 (12%)

Query: 19  ARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMD 78
           AR  AV+ L          T +++  ET+   A      E+     D      +++G + 
Sbjct: 11  ARALAVRVL----------TRVLAG-ETFAAPALDAALAEARLPARDAGLATHLVYGTLR 59

Query: 79  RKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFF 138
               ++  ++  L EK           ++L AG  E       P    +SEYV +A    
Sbjct: 60  FAPMLEAALAPLLREKTHSK-----TRALLLAGAFE-KLVLGTPPHAALSEYVNVAR-MA 112

Query: 139 YGDEPKFINAVLDKVSRKEEIKRS 162
               P  +NAVL +V R  E + +
Sbjct: 113 RLAPPGLVNAVLRRVERPAETEET 136


>gi|229197976|ref|ZP_04324690.1| rRNA SAM-dependent methyltransferase RmsB [Bacillus cereus m1293]
 gi|228585455|gb|EEK43559.1| rRNA SAM-dependent methyltransferase RmsB [Bacillus cereus m1293]
          Length = 360

 Score = 48.2 bits (114), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 12/42 (28%), Positives = 17/42 (40%)

Query: 115 LIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRK 156
           +I    VP    I E V IA    +      +N VL  + R+
Sbjct: 1   MIYLDRVPERAAIHEAVEIAKRRGHKGIAGMVNGVLRSIQRE 42


>gi|261885487|ref|ZP_06009526.1| transcription antitermination protein NusB [Campylobacter fetus
           subsp. venerealis str. Azul-94]
          Length = 32

 Score = 48.2 bits (114), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 10/29 (34%), Positives = 18/29 (62%)

Query: 127 ISEYVCIAHDFFYGDEPKFINAVLDKVSR 155
           I+E + +A++       +FIN VLD +S+
Sbjct: 2   INEAILLANELGSDSSTRFINGVLDAISK 30


>gi|15833408|ref|NP_312181.1| 16S rRNA methyltransferase B [Escherichia coli O157:H7 str. Sakai]
 gi|13363627|dbj|BAB37577.1| RNA methyltransferase [Escherichia coli O157:H7 str. Sakai]
          Length = 429

 Score = 48.2 bits (114), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 27/147 (18%), Positives = 57/147 (38%), Gaps = 17/147 (11%)

Query: 12  LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71
           + ++R + R  A QA+ Q+   G S + I+               ++      D    + 
Sbjct: 1   MKNQRNL-RSMAAQAVEQVVEQGQSLSNIL-------------PPLQQKVSDKDKALLQE 46

Query: 72  IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
           +  GV+     +D LI+  +    +  +    +  ++  G+ +L+    +P    ++E V
Sbjct: 47  LCFGVLRTLSQLDWLINKSMARPMTGKQ--RTVHYLIMVGLYQLLYTR-IPPHAALAETV 103

Query: 132 CIAHDFFYGDEPKFINAVLDKVSRKEE 158
             A           IN VL +  R++E
Sbjct: 104 EGAIAIKRPQLKGLINGVLRQFQRQQE 130


>gi|229092908|ref|ZP_04224042.1| rRNA SAM-dependent methyltransferase RmsB [Bacillus cereus
           Rock3-42]
 gi|228690530|gb|EEL44313.1| rRNA SAM-dependent methyltransferase RmsB [Bacillus cereus
           Rock3-42]
          Length = 360

 Score = 47.8 bits (113), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 12/42 (28%), Positives = 17/42 (40%)

Query: 115 LIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRK 156
           +I    VP    I E V IA    +      +N VL  + R+
Sbjct: 1   MIYLDRVPERAAIHEAVEIAKRRGHKGIAGMVNGVLRSIQRE 42


>gi|228916502|ref|ZP_04080068.1| rRNA SAM-dependent methyltransferase RmsB [Bacillus thuringiensis
           serovar pulsiensis BGSC 4CC1]
 gi|228928913|ref|ZP_04091945.1| rRNA SAM-dependent methyltransferase RmsB [Bacillus thuringiensis
           serovar pondicheriensis BGSC 4BA1]
 gi|228935179|ref|ZP_04098006.1| rRNA SAM-dependent methyltransferase RmsB [Bacillus thuringiensis
           serovar andalousiensis BGSC 4AW1]
 gi|228947584|ref|ZP_04109874.1| rRNA SAM-dependent methyltransferase RmsB [Bacillus thuringiensis
           serovar monterrey BGSC 4AJ1]
 gi|229123379|ref|ZP_04252583.1| rRNA SAM-dependent methyltransferase RmsB [Bacillus cereus 95/8201]
 gi|229186105|ref|ZP_04313274.1| rRNA SAM-dependent methyltransferase RmsB [Bacillus cereus BGSC
           6E1]
 gi|228597281|gb|EEK54932.1| rRNA SAM-dependent methyltransferase RmsB [Bacillus cereus BGSC
           6E1]
 gi|228660155|gb|EEL15791.1| rRNA SAM-dependent methyltransferase RmsB [Bacillus cereus 95/8201]
 gi|228812104|gb|EEM58435.1| rRNA SAM-dependent methyltransferase RmsB [Bacillus thuringiensis
           serovar monterrey BGSC 4AJ1]
 gi|228824544|gb|EEM70349.1| rRNA SAM-dependent methyltransferase RmsB [Bacillus thuringiensis
           serovar andalousiensis BGSC 4AW1]
 gi|228830720|gb|EEM76325.1| rRNA SAM-dependent methyltransferase RmsB [Bacillus thuringiensis
           serovar pondicheriensis BGSC 4BA1]
 gi|228843081|gb|EEM88163.1| rRNA SAM-dependent methyltransferase RmsB [Bacillus thuringiensis
           serovar pulsiensis BGSC 4CC1]
          Length = 360

 Score = 47.8 bits (113), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 12/42 (28%), Positives = 17/42 (40%)

Query: 115 LIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRK 156
           +I    VP    I E V IA    +      +N VL  + R+
Sbjct: 1   MIYLDRVPERAAIHEAVEIAKRRGHKGIAGMVNGVLRSIQRE 42


>gi|228987008|ref|ZP_04147134.1| rRNA SAM-dependent methyltransferase RmsB [Bacillus thuringiensis
           serovar tochigiensis BGSC 4Y1]
 gi|229157441|ref|ZP_04285519.1| rRNA SAM-dependent methyltransferase RmsB [Bacillus cereus ATCC
           4342]
 gi|228626168|gb|EEK82917.1| rRNA SAM-dependent methyltransferase RmsB [Bacillus cereus ATCC
           4342]
 gi|228772786|gb|EEM21226.1| rRNA SAM-dependent methyltransferase RmsB [Bacillus thuringiensis
           serovar tochigiensis BGSC 4Y1]
          Length = 360

 Score = 47.8 bits (113), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 12/42 (28%), Positives = 17/42 (40%)

Query: 115 LIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRK 156
           +I    VP    I E V IA    +      +N VL  + R+
Sbjct: 1   MIYLDRVPERAAIHEAVEIAKRRGHKGIAGMVNGVLRSIQRE 42


>gi|324009054|gb|EGB78273.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
           MS 57-2]
          Length = 429

 Score = 47.8 bits (113), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 27/147 (18%), Positives = 56/147 (38%), Gaps = 17/147 (11%)

Query: 12  LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71
           +  +R + R  A QA+ Q+   G S + I+               ++      D    + 
Sbjct: 1   MKKQRNL-RSMAAQAIEQVVEQGQSLSNIL-------------PPLQQKVSDKDKALLQE 46

Query: 72  IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
           +  GV+     +D LI+  +    +  +    +  ++  G+ +L+    +P    ++E V
Sbjct: 47  LCFGVLRTLSQLDWLINKLMARPMTGKQ--RTVHYLIMVGLYQLLYTR-IPPHAALAETV 103

Query: 132 CIAHDFFYGDEPKFINAVLDKVSRKEE 158
             A           IN VL +  R++E
Sbjct: 104 EGAIAIKRPQLKGLINGVLRQFQRQQE 130


>gi|328541770|ref|YP_004301879.1| ribosomal RNA small subunit methyltransferase B [polymorphum gilvum
           SL003B-26A1]
 gi|326411522|gb|ADZ68585.1| Ribosomal RNA small subunit methyltransferase B [Polymorphum gilvum
           SL003B-26A1]
          Length = 439

 Score = 47.8 bits (113), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 25/132 (18%), Positives = 48/132 (36%), Gaps = 14/132 (10%)

Query: 37  TTEIISEYETYRFCADTELDVESVYLH------VDLEWFRVIIHGVMDRKQHIDLLISSC 90
             +I+      R   D ELD  S +         D    R I+   + R+  I  ++ + 
Sbjct: 13  AADILGAVVHARRPLDGELDPVSGHSGFRALDSKDRALVRAILGACLRRRGRIAAIVDAL 72

Query: 91  LTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKF---IN 147
           L       +   +   IL     +++    VP    +S  V +A          +   +N
Sbjct: 73  LDRPIP-EKTGRV-LDILHVAAAQVLF-LDVPDRAAVSVAVDLAAA--DRRARPYKGLVN 127

Query: 148 AVLDKVSRKEEI 159
            VL ++SR+++ 
Sbjct: 128 GVLRRLSREKDA 139


>gi|229162801|ref|ZP_04290758.1| Ribosomal RNA small subunit methyltransferase B [Bacillus cereus
           R309803]
 gi|228620683|gb|EEK77552.1| Ribosomal RNA small subunit methyltransferase B [Bacillus cereus
           R309803]
          Length = 360

 Score = 47.8 bits (113), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 12/42 (28%), Positives = 17/42 (40%)

Query: 115 LIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRK 156
           +I    VP    I E V IA    +      +N VL  + R+
Sbjct: 1   MIYLDRVPERAAIHEAVEIAKRRGHKGIAGMVNGVLRSIQRE 42


>gi|254805842|ref|YP_003084063.1| Sun protein [Neisseria meningitidis alpha14]
 gi|254669384|emb|CBA08529.1| Sun protein [Neisseria meningitidis alpha14]
 gi|325205205|gb|ADZ00658.1| ribosomal RNA small subunit methyltransferase B [Neisseria
           meningitidis M04-240196]
          Length = 419

 Score = 47.8 bits (113), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 26/126 (20%), Positives = 50/126 (39%), Gaps = 17/126 (13%)

Query: 34  GCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTE 93
           G +  +++++  T    A  +L  +      D+ +      G       +  +++  L +
Sbjct: 20  GRNLQDVLAQIRT----AHPDLTAQENGALQDIAY------GCQRYLGSLKHMLAQMLKK 69

Query: 94  KWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVC-IAHDFFYGDEPKFINAVLDK 152
                  +  L S+L A + +L    + P  V+ +E V  IA     G    F NAVL +
Sbjct: 70  --PID--NPQLESLLLAALYQLHYTRNAPHAVV-NEAVESIAKI-GRGQYRSFANAVLRR 123

Query: 153 VSRKEE 158
             R+ E
Sbjct: 124 FLRERE 129


>gi|222087916|ref|YP_002546454.1| tRNA and rRNA cytosine-C5-methylase (RNA methyltransferase) protein
           [Agrobacterium radiobacter K84]
 gi|221725364|gb|ACM28520.1| tRNA and rRNA cytosine-C5-methylase (RNA methyltransferase) protein
           [Agrobacterium radiobacter K84]
          Length = 469

 Score = 47.8 bits (113), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 20/113 (17%), Positives = 40/113 (35%), Gaps = 8/113 (7%)

Query: 49  FCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSIL 108
             A+            D    R I++  +     I+  I+S L            L  +L
Sbjct: 60  LDAEGGNPAYKALGDSDRALVRAILNSALRHLPRIEAAIASLLDS--PLPEGARALHHVL 117

Query: 109 RAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKF---INAVLDKVSRKEE 158
             G  +++    VP    +   V  A+        +F   +NA+L ++ R+++
Sbjct: 118 VVGAAQMLY-LDVPDHSAVDIAVEQANQ--DPRNRRFAKLVNAILRRIGREKQ 167


>gi|323974759|gb|EGB69872.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
           TW10509]
          Length = 456

 Score = 47.8 bits (113), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 27/147 (18%), Positives = 56/147 (38%), Gaps = 17/147 (11%)

Query: 12  LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71
           +  +R + R  A QA+ Q+   G S + I+               ++      D    + 
Sbjct: 28  MKKQRNL-RSMAAQAVEQVVEQGQSLSNIL-------------PPLQQKVSDKDKALLQE 73

Query: 72  IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
           +  GV+     +D LI+  +    +  +    +  ++  G+ +L+    +P    ++E V
Sbjct: 74  LCFGVLRTLSQLDWLINKLMARPMTGKQ--RTVHYLIMVGLYQLLYTR-IPPHAALAETV 130

Query: 132 CIAHDFFYGDEPKFINAVLDKVSRKEE 158
             A           IN VL +  R++E
Sbjct: 131 EGAVAIKRPQLKGLINGVLRQFQRQQE 157


>gi|226953279|ref|ZP_03823743.1| 16S rRNA m5C967 SAM-dependent methyltransferase [Acinetobacter sp.
           ATCC 27244]
 gi|226835967|gb|EEH68350.1| 16S rRNA m5C967 SAM-dependent methyltransferase [Acinetobacter sp.
           ATCC 27244]
          Length = 435

 Score = 47.8 bits (113), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 28/138 (20%), Positives = 55/138 (39%), Gaps = 25/138 (18%)

Query: 21  LAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRK 80
           L AVQ        G S + +++++              ++    D   +  +  G + + 
Sbjct: 22  LLAVQ-------NGQSLSSVLNQHI-------------NMVSERDRGLYHELTLGCLRQW 61

Query: 81  QHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYG 140
             +  +    LT+      L+    S L  G+ +++ C  +PV   ISE V  A    + 
Sbjct: 62  YSLKAITLPLLTKPLDNEALE----SCLYLGLYQIL-CTRIPVHAAISETVNAAKQLGFE 116

Query: 141 DEPKFINAVLDKVSRKEE 158
                +NA+L +VSR+ +
Sbjct: 117 PMSGLVNAILRRVSRETD 134


>gi|50365012|ref|YP_053437.1| tRNA and rRNA cytosine-C5-methylase [Mesoplasma florum L1]
 gi|50363568|gb|AAT75553.1| tRNA and rRNA cytosine-C5-methylases [Mesoplasma florum L1]
          Length = 425

 Score = 47.8 bits (113), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 23/92 (25%), Positives = 39/92 (42%), Gaps = 13/92 (14%)

Query: 71  VIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSIL-RAGVLELIECHSVPVEVIISE 129
            I+HG +  +  +D +    +  K +      I   IL    + +L    ++P   +++E
Sbjct: 49  AIVHGTITNQILLDHVSRKLIDVKKT-----NIDIQILLWMSIYQLRFLKTIPQYAVVNE 103

Query: 130 YVCIAHDFFYGDEPKF---INAVLDKVSRKEE 158
            V IA         KF   +NA L KV + EE
Sbjct: 104 SVMIAKSVN----HKFSGLLNACLKKVIKNEE 131


>gi|146319475|ref|YP_001199187.1| transcription termination factor [Streptococcus suis 05ZYH33]
 gi|145690281|gb|ABP90787.1| Transcription termination factor [Streptococcus suis 05ZYH33]
          Length = 78

 Score = 47.8 bits (113), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 16/85 (18%), Positives = 36/85 (42%), Gaps = 8/85 (9%)

Query: 12 LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71
          + + R   R  A+QA+  ++           +   + +  D E + E V + +   +   
Sbjct: 2  MKNNRHALRKCALQAIVSLEFGQEPV-----QAAQFSYLYDREEEQEGVEIPL---FLLN 53

Query: 72 IIHGVMDRKQHIDLLISSCLTEKWS 96
          +++GV D +  +D  +SS L +   
Sbjct: 54 LVNGVADYRDDLDKELSSRLKQDGP 78


>gi|311739502|ref|ZP_07713337.1| RNA methyltransferase Sun [Corynebacterium pseudogenitalium ATCC
           33035]
 gi|311305318|gb|EFQ81386.1| RNA methyltransferase Sun [Corynebacterium pseudogenitalium ATCC
           33035]
          Length = 516

 Score = 47.4 bits (112), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 18/107 (16%), Positives = 36/107 (33%), Gaps = 15/107 (14%)

Query: 65  DLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVE 124
           D  +   I +G +     +D +I+ C +       +   +   LR G  +++     P  
Sbjct: 114 DAAFATEITYGTLRTLGVVDAVIAECSSRG--LEAISPAVVDALRLGTYQVLYTRVEPHA 171

Query: 125 VIISEYVCIAHDFFYGDEPKFINAV------------LDKVSRKEEI 159
             +   V +           F N +            LDK++ + EI
Sbjct: 172 -AVDTTVRLVEAAGEVKAKGFANGIMRTISRTPAKTWLDKLAPQGEI 217


>gi|332090533|gb|EGI95631.1| ribosomal RNA small subunit methyltransferase B [Shigella boydii
           3594-74]
          Length = 454

 Score = 47.4 bits (112), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 26/145 (17%), Positives = 54/145 (37%), Gaps = 16/145 (11%)

Query: 14  HRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVII 73
            ++   R  A QA+ Q+   G S + I+               ++      D    + + 
Sbjct: 27  EKQRNLRSMAAQAVEQVVEQGQSLSNIL-------------PPLQQKVSDKDKALLQELC 73

Query: 74  HGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCI 133
            GV+     +D LI+  +    +  +    +  ++  G+ +L+    +P    ++E V  
Sbjct: 74  FGVLRTLSQLDWLINKLMARPMTGKQ--RTVHYLIMVGLYQLLYTR-IPPHAALAETVEG 130

Query: 134 AHDFFYGDEPKFINAVLDKVSRKEE 158
           A           IN VL +  R++E
Sbjct: 131 AIAIKRPQLKGLINGVLRQFQRQQE 155


>gi|242237890|ref|YP_002986071.1| 16S rRNA methyltransferase B [Dickeya dadantii Ech703]
 gi|242129947|gb|ACS84249.1| sun protein [Dickeya dadantii Ech703]
          Length = 431

 Score = 47.4 bits (112), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 22/123 (17%), Positives = 45/123 (36%), Gaps = 4/123 (3%)

Query: 37  TTEIISEYETYRFCADTELD-VESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKW 95
              +I++   +       L  V+      D    + +  GV+     +D  I   + +  
Sbjct: 11  AAAVIAQVLDHGQSLSQSLPAVQRDIAEKDRALLQELCFGVLRVLPQLDWCIGQLMAK-- 68

Query: 96  SFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSR 155
             +    +L  +L  G+ +L+    +P    ++E V  A           IN VL +  R
Sbjct: 69  PLTGKQRVLHYLLMVGLYQLLYTR-IPPHATLAETVEGATALKRPQLKGLINGVLRQFQR 127

Query: 156 KEE 158
           ++E
Sbjct: 128 QQE 130


>gi|255325042|ref|ZP_05366148.1| Fmu protein [Corynebacterium tuberculostearicum SK141]
 gi|255297607|gb|EET76918.1| Fmu protein [Corynebacterium tuberculostearicum SK141]
          Length = 516

 Score = 47.4 bits (112), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 18/107 (16%), Positives = 36/107 (33%), Gaps = 15/107 (14%)

Query: 65  DLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVE 124
           D  +   I +G +     +D +I+ C +       +   +   LR G  +++     P  
Sbjct: 114 DAAFATEITYGTLRTLGVVDAVIAECSSRG--LEAISPAVVDALRLGTYQVLYTRVEPHA 171

Query: 125 VIISEYVCIAHDFFYGDEPKFINAV------------LDKVSRKEEI 159
             +   V +           F N +            LDK++ + EI
Sbjct: 172 -AVDTTVRLVEAAGEVKAKGFANGIMRTITRTPAKAWLDKLAPQGEI 217


>gi|270609376|ref|ZP_06221647.1| N utilization substance protein B-like protein [Haemophilus
          influenzae HK1212]
 gi|270318117|gb|EFA29359.1| N utilization substance protein B-like protein [Haemophilus
          influenzae HK1212]
          Length = 38

 Score = 47.4 bits (112), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 14/41 (34%), Positives = 19/41 (46%), Gaps = 3/41 (7%)

Query: 1  MTIQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEII 41
          MT Q   K +K    R  AR   VQALY   + G +  ++ 
Sbjct: 1  MTEQ---KQVKKPSARRRARECTVQALYSWAVSGNTAEQVE 38


>gi|325283419|ref|YP_004255960.1| NusB/RsmB/TIM44 [Deinococcus proteolyticus MRP]
 gi|324315228|gb|ADY26343.1| NusB/RsmB/TIM44 [Deinococcus proteolyticus MRP]
          Length = 418

 Score = 47.4 bits (112), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 24/112 (21%), Positives = 46/112 (41%), Gaps = 22/112 (19%)

Query: 59  SVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCL-----TEKWSFSRLDMILCSILRAGVL 113
           +     D      I++G + R   + L ++  L      + W          ++L AG  
Sbjct: 41  AGLPARDAGLATHIVYGTLRRAPALRLALNPLLRGKTAPKAW----------ALLLAGAF 90

Query: 114 ELIECHSVPVEVIISEYVCIAHD--FFYGDEPKFINAVLDKV-SRKEEIKRS 162
           E +     P   +++EYV +A +  F     P  +NAVL +V + +E+   +
Sbjct: 91  EKLY-LGTPEHAVVNEYVSLARESRFAP---PGLVNAVLRRVQAPQEDTPEA 138


>gi|110643527|ref|YP_671257.1| 16S rRNA methyltransferase B [Escherichia coli 536]
 gi|123343554|sp|Q0TCH3|RSMB_ECOL5 RecName: Full=Ribosomal RNA small subunit methyltransferase B;
           AltName: Full=16S rRNA m5C967 methyltransferase;
           AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
           rsmB
 gi|110345119|gb|ABG71356.1| SUN protein [Escherichia coli 536]
          Length = 429

 Score = 47.4 bits (112), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 26/147 (17%), Positives = 56/147 (38%), Gaps = 17/147 (11%)

Query: 12  LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71
           +  +R + R  A QA+ Q+   G S + I+               ++      D    + 
Sbjct: 1   MKKQRNL-RSMAAQAIEQVVEQGQSLSNIL-------------PPLQQKVSDKDKALLQE 46

Query: 72  IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
           +  GV+     +D LI+  +    +  +    +  ++  G+ +L+    +P    ++E V
Sbjct: 47  LCFGVLRTLSQLDWLINKLMARPMTGKQ--RTVHYLIMVGLYQLLYTR-IPPHAALAETV 103

Query: 132 CIAHDFFYGDEPKFINAVLDKVSRKEE 158
             A           IN VL +  R+++
Sbjct: 104 EGAVAIKRPQLKGLINGVLRQFQRQQD 130


>gi|82778586|ref|YP_404935.1| 16S rRNA methyltransferase B [Shigella dysenteriae Sd197]
 gi|309785611|ref|ZP_07680242.1| ribosomal RNA small subunit methyltransferase B [Shigella
           dysenteriae 1617]
 gi|123742076|sp|Q32B61|RSMB_SHIDS RecName: Full=Ribosomal RNA small subunit methyltransferase B;
           AltName: Full=16S rRNA m5C967 methyltransferase;
           AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
           rsmB
 gi|81242734|gb|ABB63444.1| conserved hypothetical protein [Shigella dysenteriae Sd197]
 gi|308926731|gb|EFP72207.1| ribosomal RNA small subunit methyltransferase B [Shigella
           dysenteriae 1617]
          Length = 429

 Score = 47.4 bits (112), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 28/147 (19%), Positives = 55/147 (37%), Gaps = 17/147 (11%)

Query: 12  LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71
           +  +R + R  A QA+ Q+   G S + I+               ++      D    + 
Sbjct: 1   MKKQRNL-RSMAAQAVEQVVEQGQSLSNIL-------------PPLQQKVSDKDKALLQE 46

Query: 72  IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
           +  GV+     +D LI+  +      S     +  ++  G+ +L+    +P    ++E V
Sbjct: 47  LCFGVLRTLSQLDWLINKLMAR--PMSGKQRTVHYLIMVGLYQLLYTR-IPPHAALAETV 103

Query: 132 CIAHDFFYGDEPKFINAVLDKVSRKEE 158
             A           IN VL +  R++E
Sbjct: 104 EGAIAIKRPQLKGLINGVLRQFQRQQE 130


>gi|126727795|ref|ZP_01743625.1| ribosomal RNA small subunit methyltransferase B, putative
           [Rhodobacterales bacterium HTCC2150]
 gi|126702922|gb|EBA02025.1| ribosomal RNA small subunit methyltransferase B, putative
           [Rhodobacterales bacterium HTCC2150]
          Length = 423

 Score = 47.4 bits (112), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 27/145 (18%), Positives = 48/145 (33%), Gaps = 25/145 (17%)

Query: 18  IARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVM 77
           IAR AAV+ + ++       T++ S +                    D      +    +
Sbjct: 12  IARRAAVRLIDEVLENQRPLTDLTSNFRAL--------------PAADKARAMRLAMTTL 57

Query: 78  DRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDF 137
                 D ++   L  K         + +ILR  V E+    +    V+    V +    
Sbjct: 58  RNVGRADQVLIPYL-RKPPLG----TVMNILRLAVTEICHEGAQDYAVV-DSAVAMTRKL 111

Query: 138 FYGDEPKF---INAVLDKVSRKEEI 159
              +   F   +NAVL KV+R  + 
Sbjct: 112 --RNSSHFAGLVNAVLRKVARDGQA 134


>gi|281180323|dbj|BAI56653.1| putative rRNA methylase [Escherichia coli SE15]
          Length = 429

 Score = 47.4 bits (112), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 26/147 (17%), Positives = 56/147 (38%), Gaps = 17/147 (11%)

Query: 12  LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71
           +  +R + R  A QA+ Q+   G S + I+               ++      D    + 
Sbjct: 1   MKKQRNL-RSMAAQAIEQVVEQGQSLSNIL-------------PPLQQKVSDKDKALLQE 46

Query: 72  IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
           +  GV+     +D LI+  +    +  +    +  ++  G+ +L+    +P    ++E V
Sbjct: 47  LCFGVLRTLSQLDWLINKLMARPMTGKQ--RTVHYLIMVGLYQLLYTR-IPPHAALAETV 103

Query: 132 CIAHDFFYGDEPKFINAVLDKVSRKEE 158
             A           IN VL +  R+++
Sbjct: 104 EGAVAIKRPQLKGLINGVLRQFQRQQD 130


>gi|256823833|ref|YP_003147796.1| sun protein [Kangiella koreensis DSM 16069]
 gi|256797372|gb|ACV28028.1| sun protein [Kangiella koreensis DSM 16069]
          Length = 443

 Score = 47.4 bits (112), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 27/138 (19%), Positives = 47/138 (34%), Gaps = 17/138 (12%)

Query: 20  RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79
           R  A  AL+ I   G S  ++++                      D   FR ++ G    
Sbjct: 16  RQQACLALHAIAFEGRSANDVLNSI--------------QFEQGSDNSLFRALVLGSCRY 61

Query: 80  KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139
              ++ +    L + +     D  L  ++  G+ +L     VP    ISE V +      
Sbjct: 62  FIRLESIAKQLLQKPFKPK--DQDLLCLIIIGLYQLEYSR-VPDHAAISETVSVCEQLKK 118

Query: 140 GDEPKFINAVLDKVSRKE 157
               K +N VL    R++
Sbjct: 119 PWATKLVNGVLRNFVRQQ 136


>gi|91212715|ref|YP_542701.1| 16S rRNA methyltransferase B [Escherichia coli UTI89]
 gi|117625571|ref|YP_858894.1| 16S rRNA methyltransferase B [Escherichia coli APEC O1]
 gi|218560350|ref|YP_002393263.1| 16S rRNA methyltransferase B [Escherichia coli S88]
 gi|237703018|ref|ZP_04533499.1| conserved hypothetical protein [Escherichia sp. 3_2_53FAA]
 gi|123265979|sp|Q1R644|RSMB_ECOUT RecName: Full=Ribosomal RNA small subunit methyltransferase B;
           AltName: Full=16S rRNA m5C967 methyltransferase;
           AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
           rsmB
 gi|224493249|sp|A1AGI0|RSMB_ECOK1 RecName: Full=Ribosomal RNA small subunit methyltransferase B;
           AltName: Full=16S rRNA m5C967 methyltransferase;
           AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
           rsmB
 gi|254766854|sp|B7MCQ4|RSMB_ECO45 RecName: Full=Ribosomal RNA small subunit methyltransferase B;
           AltName: Full=16S rRNA m5C967 methyltransferase;
           AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
           rsmB
 gi|91074289|gb|ABE09170.1| SUN protein [Escherichia coli UTI89]
 gi|115514695|gb|ABJ02770.1| Sun protein [Escherichia coli APEC O1]
 gi|218367119|emb|CAR04893.1| 16S rRNA m5C967 methyltransferase,
           S-adenosyl-L-methionine-dependent [Escherichia coli S88]
 gi|226902282|gb|EEH88541.1| conserved hypothetical protein [Escherichia sp. 3_2_53FAA]
 gi|294490375|gb|ADE89131.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
           IHE3034]
 gi|307628323|gb|ADN72627.1| 16S rRNA methyltransferase B [Escherichia coli UM146]
 gi|315284577|gb|EFU44022.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
           MS 110-3]
 gi|323950202|gb|EGB46084.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
           H252]
 gi|323954589|gb|EGB50372.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
           H263]
          Length = 429

 Score = 47.4 bits (112), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 26/147 (17%), Positives = 56/147 (38%), Gaps = 17/147 (11%)

Query: 12  LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71
           +  +R + R  A QA+ Q+   G S + I+               ++      D    + 
Sbjct: 1   MKKQRNL-RSMAAQAIEQVVEQGQSLSNIL-------------PPLQQKVSDKDKALLQE 46

Query: 72  IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
           +  GV+     +D LI+  +    +  +    +  ++  G+ +L+    +P    ++E V
Sbjct: 47  LCFGVLRTLSQLDWLINKLMARPMTGKQ--RTVHYLIMVGLYQLLYTR-IPPHAALAETV 103

Query: 132 CIAHDFFYGDEPKFINAVLDKVSRKEE 158
             A           IN VL +  R+++
Sbjct: 104 EGAVAIKRPQLKGLINGVLRQFQRQQD 130


>gi|191174468|ref|ZP_03035969.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
           F11]
 gi|300973968|ref|ZP_07172375.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
           MS 200-1]
 gi|306816369|ref|ZP_07450507.1| 16S rRNA methyltransferase B [Escherichia coli NC101]
 gi|190905276|gb|EDV64914.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
           F11]
 gi|222034997|emb|CAP77740.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
           LF82]
 gi|300308978|gb|EFJ63498.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
           MS 200-1]
 gi|305850765|gb|EFM51222.1| 16S rRNA methyltransferase B [Escherichia coli NC101]
 gi|312947839|gb|ADR28666.1| 16S rRNA methyltransferase B [Escherichia coli O83:H1 str. NRG
           857C]
 gi|324014965|gb|EGB84184.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
           MS 60-1]
          Length = 429

 Score = 47.4 bits (112), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 26/147 (17%), Positives = 56/147 (38%), Gaps = 17/147 (11%)

Query: 12  LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71
           +  +R + R  A QA+ Q+   G S + I+               ++      D    + 
Sbjct: 1   MKKQRNL-RSMAAQAIEQVVEQGQSLSNIL-------------PPLQQKVSDKDKALLQE 46

Query: 72  IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
           +  GV+     +D LI+  +    +  +    +  ++  G+ +L+    +P    ++E V
Sbjct: 47  LCFGVLRTLSQLDWLINKLMARPMTGKQ--RTVHYLIMVGLYQLLYTR-IPPHAALAETV 103

Query: 132 CIAHDFFYGDEPKFINAVLDKVSRKEE 158
             A           IN VL +  R+++
Sbjct: 104 EGAVAIKRPQLKGLINGVLRQFQRQQD 130


>gi|24371630|ref|NP_715672.1| sun protein [Shewanella oneidensis MR-1]
 gi|46396921|sp|Q8EKR0|RSMB_SHEON RecName: Full=Ribosomal RNA small subunit methyltransferase B;
           AltName: Full=16S rRNA m5C967 methyltransferase;
           AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
           rsmB
 gi|24345386|gb|AAN53117.1|AE015454_11 sun protein [Shewanella oneidensis MR-1]
          Length = 428

 Score = 47.4 bits (112), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 26/137 (18%), Positives = 48/137 (35%), Gaps = 15/137 (10%)

Query: 20  RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79
           R  A +A++ +   G S +  + E + +            +    D      + +GVM  
Sbjct: 4   RALAAKAIFDVLEKGVSLSVALPEQQKH------------LASGKDKALLAELCYGVMRT 51

Query: 80  KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139
              I+   + CL +         I+  +L  G  +L     +P    ISE         +
Sbjct: 52  LPQIEKRTAECLAK--PLKGKQRIIHQLLIVGCYQL-YFTRIPSHAAISETAEACRQLKF 108

Query: 140 GDEPKFINAVLDKVSRK 156
               K +N VL  + R+
Sbjct: 109 EGMVKVVNGVLRNIQRQ 125


>gi|317050738|ref|YP_004111854.1| Fmu (Sun) domain-containing protein [Desulfurispirillum indicum S5]
 gi|316945822|gb|ADU65298.1| Fmu (Sun) domain protein [Desulfurispirillum indicum S5]
          Length = 417

 Score = 47.4 bits (112), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 17/88 (19%), Positives = 35/88 (39%), Gaps = 8/88 (9%)

Query: 69  FRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIIS 128
           FR ++ G   +   ++ ++ +          L+  + ++L   V  +      P   ++ 
Sbjct: 43  FREMVSGAFRQLLLLESILKASCDR--PLRELEPFVKALLVLSVYRIYFLQD-PDYTVVD 99

Query: 129 EYVCIAHDFFYGDEPK-FINAVLDKVSR 155
           E    A+     D  K F+N VL  V+R
Sbjct: 100 E----ANGLCAHDGQKSFVNGVLRNVTR 123


>gi|315297154|gb|EFU56434.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
           MS 16-3]
          Length = 429

 Score = 47.4 bits (112), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 26/147 (17%), Positives = 56/147 (38%), Gaps = 17/147 (11%)

Query: 12  LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71
           +  +R + R  A QA+ Q+   G S + I+               ++      D    + 
Sbjct: 1   MKKQRNL-RSMAAQAIEQVVEQGQSLSNIL-------------PPLQQKVSDKDKALLQE 46

Query: 72  IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
           +  GV+     +D LI+  +    +  +    +  ++  G+ +L+    +P    ++E V
Sbjct: 47  LCFGVLRTLSQLDWLINKLMARPMTGKQ--RTVHYLIMVGLYQLLYTR-IPPHAALAETV 103

Query: 132 CIAHDFFYGDEPKFINAVLDKVSRKEE 158
             A           IN VL +  R+++
Sbjct: 104 EGAVAIKRPQLKGLINGVLRQFQRQQD 130


>gi|218706896|ref|YP_002414415.1| 16S rRNA methyltransferase B [Escherichia coli UMN026]
 gi|293406886|ref|ZP_06650810.1| 16S rRNA methyltransferase B [Escherichia coli FVEC1412]
 gi|298382627|ref|ZP_06992222.1| 16S rRNA methyltransferase B [Escherichia coli FVEC1302]
 gi|300896636|ref|ZP_07115153.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
           MS 198-1]
 gi|331664901|ref|ZP_08365802.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
           TA143]
 gi|254766859|sp|B7NDR0|RSMB_ECOLU RecName: Full=Ribosomal RNA small subunit methyltransferase B;
           AltName: Full=16S rRNA m5C967 methyltransferase;
           AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
           rsmB
 gi|218433993|emb|CAR14910.1| 16S rRNA m5C967 methyltransferase,
           S-adenosyl-L-methionine-dependent [Escherichia coli
           UMN026]
 gi|284923295|emb|CBG36389.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
           042]
 gi|291425697|gb|EFE98731.1| 16S rRNA methyltransferase B [Escherichia coli FVEC1412]
 gi|298276463|gb|EFI17981.1| 16S rRNA methyltransferase B [Escherichia coli FVEC1302]
 gi|300359513|gb|EFJ75383.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
           MS 198-1]
 gi|331057411|gb|EGI29397.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
           TA143]
          Length = 429

 Score = 47.0 bits (111), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 27/147 (18%), Positives = 56/147 (38%), Gaps = 17/147 (11%)

Query: 12  LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71
           +  +R + R  A QA+ Q+   G S + I+               ++      D    + 
Sbjct: 1   MKKQRNL-RSMAAQAVEQVVEQGQSLSNIL-------------PPLQQKVSDKDKALLQE 46

Query: 72  IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
           +  GV+     +D LI+  +    +  +    +  ++  G+ +L+    +P    ++E V
Sbjct: 47  LCFGVLRTLSQLDWLINKLMARPMTGKQ--RTVHYLIMVGLYQLLYTR-IPPHAALAETV 103

Query: 132 CIAHDFFYGDEPKFINAVLDKVSRKEE 158
             A           IN VL +  R++E
Sbjct: 104 EGAVAIKRPQLKGLINGVLRQFQRQQE 130


>gi|308449899|ref|XP_003088114.1| hypothetical protein CRE_16572 [Caenorhabditis remanei]
 gi|308249515|gb|EFO93467.1| hypothetical protein CRE_16572 [Caenorhabditis remanei]
          Length = 435

 Score = 47.0 bits (111), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 27/136 (19%), Positives = 52/136 (38%), Gaps = 25/136 (18%)

Query: 21  LAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRK 80
           L AVQ        G S   +++++              ++    D   +  +  G + + 
Sbjct: 21  LLAVQ-------NGQSLASVLNQHI-------------NIISERDRGLYHELTLGCLRQW 60

Query: 81  QHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYG 140
             +  +    LT+      L+    S L  G+ +++ C  +P    ISE V  A    + 
Sbjct: 61  YSLKAITLPLLTKPLDNEALE----SCLYLGLYQIL-CTRIPAHAAISETVNAAKQLGFE 115

Query: 141 DEPKFINAVLDKVSRK 156
                +NA+L +VSR+
Sbjct: 116 PMSGLVNAILRRVSRE 131


>gi|215488588|ref|YP_002331019.1| 16S rRNA methyltransferase B [Escherichia coli O127:H6 str.
           E2348/69]
 gi|312968386|ref|ZP_07782596.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
           2362-75]
 gi|254766853|sp|B7UK12|RSMB_ECO27 RecName: Full=Ribosomal RNA small subunit methyltransferase B;
           AltName: Full=16S rRNA m5C967 methyltransferase;
           AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
           rsmB
 gi|215266660|emb|CAS11099.1| 16S rRNA m5C967 methyltransferase,
           S-adenosyl-L-methionine-dependent [Escherichia coli
           O127:H6 str. E2348/69]
 gi|312287211|gb|EFR15121.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
           2362-75]
 gi|323189106|gb|EFZ74390.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
           RN587/1]
          Length = 429

 Score = 47.0 bits (111), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 27/147 (18%), Positives = 56/147 (38%), Gaps = 17/147 (11%)

Query: 12  LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71
           +  +R + R  A QA+ Q+   G S + I+               ++      D    + 
Sbjct: 1   MKKQRNL-RSMAAQAVEQVVEQGQSLSNIL-------------PPLQQKVSDKDKALLQE 46

Query: 72  IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
           +  GV+     +D LI+  +    +  +    +  ++  G+ +L+    +P    ++E V
Sbjct: 47  LCFGVLRTLSQLDWLINKLMARPMTGKQ--RTVHYLIMVGLYQLLYTR-IPPHAALAETV 103

Query: 132 CIAHDFFYGDEPKFINAVLDKVSRKEE 158
             A           IN VL +  R++E
Sbjct: 104 EGAVAIKRPQLKGLINGVLRQFQRQQE 130


>gi|254172425|ref|ZP_04879100.1| tRNA/rRNA cytosine-C5-methylase, NOL1/NOP2/Sun family, fused to
           N-terminal NusB regulator domain [Thermococcus sp. AM4]
 gi|214033354|gb|EEB74181.1| tRNA/rRNA cytosine-C5-methylase, NOL1/NOP2/Sun family, fused to
           N-terminal NusB regulator domain [Thermococcus sp. AM4]
          Length = 451

 Score = 47.0 bits (111), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 20/88 (22%), Positives = 36/88 (40%), Gaps = 2/88 (2%)

Query: 68  WFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVII 127
                +  +   +  ID +I+S L        LD  L ++LR G  E+     VP  +  
Sbjct: 49  LAHAYVFEIEKWRGKIDFIINSVL-RGSKVEDLDPYLANLLRIGTFEIHFRK-VPPAIAT 106

Query: 128 SEYVCIAHDFFYGDEPKFINAVLDKVSR 155
              V +  + F     KF+NA++  + +
Sbjct: 107 DSVVRVVKERFDFSRAKFVNALMHSIEK 134


>gi|332085437|gb|EGI90603.1| ribosomal RNA small subunit methyltransferase B [Shigella boydii
           5216-82]
          Length = 429

 Score = 47.0 bits (111), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 28/147 (19%), Positives = 57/147 (38%), Gaps = 17/147 (11%)

Query: 12  LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71
           +  +R + R  A QA+ Q+   G S + I+               ++      D    + 
Sbjct: 1   MKKQRNL-RSMAAQAVEQVVEQGQSLSNIL-------------PPLQQKVSDKDKALLQE 46

Query: 72  IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
           +  GV+     +D LI+  +    +  +    +  ++  G+ +L+  H +P    ++E V
Sbjct: 47  LCFGVLRTLSQLDWLINKLMARPMTGKQ--RTVHYLIMVGLYQLLYTH-IPPHAALAETV 103

Query: 132 CIAHDFFYGDEPKFINAVLDKVSRKEE 158
             A           IN VL +  R++E
Sbjct: 104 EGAIAIKRPQLKGLINGVLRQFQRRQE 130


>gi|255067827|ref|ZP_05319682.1| ribosomal RNA small subunit methyltransferase B [Neisseria sicca
           ATCC 29256]
 gi|255047918|gb|EET43382.1| ribosomal RNA small subunit methyltransferase B [Neisseria sicca
           ATCC 29256]
          Length = 419

 Score = 47.0 bits (111), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 25/126 (19%), Positives = 50/126 (39%), Gaps = 17/126 (13%)

Query: 34  GCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTE 93
           G +  +++++       A  EL V+      D+ +      G       +  +++  L +
Sbjct: 20  GRNLQDVLAQIRA----AHPELTVQENGALQDIAY------GCQRYLGSLKHMLAQMLKK 69

Query: 94  KWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVC-IAHDFFYGDEPKFINAVLDK 152
                  +  L S+L A + +L    + P  V+ +E V  IA     G    F NA+L +
Sbjct: 70  --PID--NPQLESLLLAAMYQLHYTRNAPHAVV-NEAVESIAKI-GRGQYRSFANAILRR 123

Query: 153 VSRKEE 158
             R+ +
Sbjct: 124 FLRERD 129


>gi|15803816|ref|NP_289850.1| 16S rRNA methyltransferase B [Escherichia coli O157:H7 EDL933]
 gi|168752263|ref|ZP_02777285.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
           O157:H7 str. EC4113]
 gi|168758516|ref|ZP_02783523.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
           O157:H7 str. EC4401]
 gi|168764971|ref|ZP_02789978.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
           O157:H7 str. EC4501]
 gi|168769150|ref|ZP_02794157.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
           O157:H7 str. EC4486]
 gi|168777854|ref|ZP_02802861.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
           O157:H7 str. EC4196]
 gi|168783855|ref|ZP_02808862.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
           O157:H7 str. EC4076]
 gi|168786178|ref|ZP_02811185.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
           O157:H7 str. EC869]
 gi|168802718|ref|ZP_02827725.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
           O157:H7 str. EC508]
 gi|195939836|ref|ZP_03085218.1| 16S rRNA methyltransferase B [Escherichia coli O157:H7 str. EC4024]
 gi|208808123|ref|ZP_03250460.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
           O157:H7 str. EC4206]
 gi|208812777|ref|ZP_03254106.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
           O157:H7 str. EC4045]
 gi|208820338|ref|ZP_03260658.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
           O157:H7 str. EC4042]
 gi|209396232|ref|YP_002272745.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
           O157:H7 str. EC4115]
 gi|217326360|ref|ZP_03442444.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
           O157:H7 str. TW14588]
 gi|254795225|ref|YP_003080062.1| 16S rRNA methyltransferase B [Escherichia coli O157:H7 str.
           TW14359]
 gi|261224593|ref|ZP_05938874.1| 16S rRNA m5C967 methyltransferase [Escherichia coli O157:H7 str.
           FRIK2000]
 gi|261254513|ref|ZP_05947046.1| 16S rRNA m5C967 methyltransferase [Escherichia coli O157:H7 str.
           FRIK966]
 gi|46396973|sp|Q8XEE5|RSMB_ECO57 RecName: Full=Ribosomal RNA small subunit methyltransferase B;
           AltName: Full=16S rRNA m5C967 methyltransferase;
           AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
           rsmB
 gi|224493246|sp|B5YT08|RSMB_ECO5E RecName: Full=Ribosomal RNA small subunit methyltransferase B;
           AltName: Full=16S rRNA m5C967 methyltransferase;
           AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
           rsmB
 gi|12517918|gb|AAG58410.1|AE005556_3 orf, hypothetical protein [Escherichia coli O157:H7 str. EDL933]
 gi|187767005|gb|EDU30849.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
           O157:H7 str. EC4196]
 gi|188013841|gb|EDU51963.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
           O157:H7 str. EC4113]
 gi|188998877|gb|EDU67863.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
           O157:H7 str. EC4076]
 gi|189354681|gb|EDU73100.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
           O157:H7 str. EC4401]
 gi|189361764|gb|EDU80183.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
           O157:H7 str. EC4486]
 gi|189365121|gb|EDU83537.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
           O157:H7 str. EC4501]
 gi|189373894|gb|EDU92310.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
           O157:H7 str. EC869]
 gi|189375353|gb|EDU93769.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
           O157:H7 str. EC508]
 gi|208727924|gb|EDZ77525.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
           O157:H7 str. EC4206]
 gi|208734054|gb|EDZ82741.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
           O157:H7 str. EC4045]
 gi|208740461|gb|EDZ88143.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
           O157:H7 str. EC4042]
 gi|209157632|gb|ACI35065.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
           O157:H7 str. EC4115]
 gi|209757340|gb|ACI76982.1| RNA methyltransferase [Escherichia coli]
 gi|209757342|gb|ACI76983.1| RNA methyltransferase [Escherichia coli]
 gi|209757346|gb|ACI76985.1| RNA methyltransferase [Escherichia coli]
 gi|217322581|gb|EEC31005.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
           O157:H7 str. TW14588]
 gi|254594625|gb|ACT73986.1| 16S rRNA m5C967 methyltransferase [Escherichia coli O157:H7 str.
           TW14359]
 gi|320191677|gb|EFW66327.1| Ribosomal RNA small subunit methyltransferase B [Escherichia coli
           O157:H7 str. EC1212]
 gi|320639593|gb|EFX09187.1| 16S rRNA methyltransferase B [Escherichia coli O157:H7 str. G5101]
 gi|326342537|gb|EGD66311.1| Ribosomal RNA small subunit methyltransferase B [Escherichia coli
           O157:H7 str. 1044]
 gi|326344524|gb|EGD68273.1| Ribosomal RNA small subunit methyltransferase B [Escherichia coli
           O157:H7 str. 1125]
          Length = 429

 Score = 47.0 bits (111), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 27/147 (18%), Positives = 56/147 (38%), Gaps = 17/147 (11%)

Query: 12  LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71
           +  +R + R  A QA+ Q+   G S + I+               ++      D    + 
Sbjct: 1   MKKQRNL-RSMAAQAVEQVVEQGQSLSNIL-------------PPLQQKVSDKDKALLQE 46

Query: 72  IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
           +  GV+     +D LI+  +    +  +    +  ++  G+ +L+    +P    ++E V
Sbjct: 47  LCFGVLRTLSQLDWLINKSMARPMTGKQ--RTVHYLIMVGLYQLLYTR-IPPHAALAETV 103

Query: 132 CIAHDFFYGDEPKFINAVLDKVSRKEE 158
             A           IN VL +  R++E
Sbjct: 104 EGAIAIKRPQLKGLINGVLRQFQRQQE 130


>gi|291284647|ref|YP_003501465.1| Ribosomal RNA small subunit methyltransferase B (rRNA
           (cytosine-C(5)-)-methyltransferase) [Escherichia coli
           O55:H7 str. CB9615]
 gi|209757338|gb|ACI76981.1| RNA methyltransferase [Escherichia coli]
 gi|209757344|gb|ACI76984.1| RNA methyltransferase [Escherichia coli]
 gi|290764520|gb|ADD58481.1| Ribosomal RNA small subunit methyltransferase B (rRNA
           (cytosine-C(5)-)-methyltransferase) [Escherichia coli
           O55:H7 str. CB9615]
 gi|320645091|gb|EFX14107.1| 16S rRNA methyltransferase B [Escherichia coli O157:H- str. 493-89]
 gi|320650402|gb|EFX18868.1| 16S rRNA methyltransferase B [Escherichia coli O157:H- str. H 2687]
 gi|320661379|gb|EFX28794.1| 16S rRNA methyltransferase B [Escherichia coli O55:H7 str. USDA
           5905]
          Length = 429

 Score = 47.0 bits (111), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 27/147 (18%), Positives = 56/147 (38%), Gaps = 17/147 (11%)

Query: 12  LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71
           +  +R + R  A QA+ Q+   G S + I+               ++      D    + 
Sbjct: 1   MKKQRNL-RSMAAQAVEQVVEQGQSLSNIL-------------PPLQQKVSDKDKALLQE 46

Query: 72  IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
           +  GV+     +D LI+  +    +  +    +  ++  G+ +L+    +P    ++E V
Sbjct: 47  LCFGVLRTLSQLDWLINKSMARPMTGKQ--RTVHYLIMVGLYQLLYTR-IPPHAALAETV 103

Query: 132 CIAHDFFYGDEPKFINAVLDKVSRKEE 158
             A           IN VL +  R++E
Sbjct: 104 EGAIAIKRPQLKGLINGVLRQFQRQQE 130


>gi|170769473|ref|ZP_02903926.1| ribosomal RNA small subunit methyltransferase B [Escherichia
           albertii TW07627]
 gi|170121530|gb|EDS90461.1| ribosomal RNA small subunit methyltransferase B [Escherichia
           albertii TW07627]
          Length = 429

 Score = 47.0 bits (111), Expect = 0.001,   Method: Composition-based stats.
 Identities = 21/130 (16%), Positives = 50/130 (38%), Gaps = 3/130 (2%)

Query: 29  QIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLIS 88
           Q ++   +   +    E  +  ++    ++      D    + +  GV+     +D LI+
Sbjct: 4   QRNLRSMAAQAVEQVVEQGQSLSNILPPLQQKVSDKDKALLQELCFGVLRTLSQLDWLIN 63

Query: 89  SCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINA 148
             +T   +  +    +  ++  G+ +L+    +P    ++E V  A           IN 
Sbjct: 64  KLMTRPMTGKQ--RTVHYLIMVGLYQLLYTR-IPPHAALAETVEGAVAIKRPQLKGLING 120

Query: 149 VLDKVSRKEE 158
           VL +  R++E
Sbjct: 121 VLRQFQRQQE 130


>gi|333014516|gb|EGK33864.1| ribosomal RNA small subunit methyltransferase B [Shigella flexneri
           K-227]
          Length = 454

 Score = 47.0 bits (111), Expect = 0.001,   Method: Composition-based stats.
 Identities = 20/130 (15%), Positives = 49/130 (37%), Gaps = 3/130 (2%)

Query: 29  QIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLIS 88
           Q ++   +   +    E  +  ++    ++      D    + +  GV+     +D LI+
Sbjct: 29  QRNLRSMAAHAVEQVVEQGQSLSNILPPLQQKVSDKDKALLQELCFGVLRTLSQLDWLIN 88

Query: 89  SCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINA 148
             +    +  +    +  ++  G+ +L+    +P    ++E V  A           IN 
Sbjct: 89  KLMARPMTGKQ--RTVHYLIMVGLYQLLYTR-IPPHAALAETVEGAIAIKRPQLKGLING 145

Query: 149 VLDKVSRKEE 158
           VL +  R++E
Sbjct: 146 VLRQFQRRQE 155


>gi|323966250|gb|EGB61685.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
           M863]
 gi|327250937|gb|EGE62630.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
           STEC_7v]
          Length = 429

 Score = 47.0 bits (111), Expect = 0.001,   Method: Composition-based stats.
 Identities = 20/130 (15%), Positives = 49/130 (37%), Gaps = 3/130 (2%)

Query: 29  QIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLIS 88
           Q ++   +   +    E  +  ++    ++      D    + +  GV+     +D LI+
Sbjct: 4   QRNLRSMAAQAVEQVVEQGQSLSNILPPLQQKVSDKDKALLQELCFGVLRTLSQLDWLIN 63

Query: 89  SCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINA 148
             +    +  +    +  ++  G+ +L+    +P    ++E V  A           IN 
Sbjct: 64  KLMARPMTGKQ--RTVHYLIMVGLYQLLYTR-IPPHAALAETVEGAVAIKRPQLKGLING 120

Query: 149 VLDKVSRKEE 158
           VL +  R++E
Sbjct: 121 VLRQFQRQQE 130


>gi|310778567|ref|YP_003966900.1| sun protein [Ilyobacter polytropus DSM 2926]
 gi|309747890|gb|ADO82552.1| sun protein [Ilyobacter polytropus DSM 2926]
          Length = 434

 Score = 47.0 bits (111), Expect = 0.001,   Method: Composition-based stats.
 Identities = 21/128 (16%), Positives = 45/128 (35%), Gaps = 15/128 (11%)

Query: 39  EIISEYETYRFCAD--TELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEK-- 94
           +++ E+E  ++      E   E+     +  +   + +GV+     +D  I    T+K  
Sbjct: 9   KLLGEFEDGKYSNILLNEYFRENNLSRGEKAFITEVFYGVIRNIIFLDYQIDKRATKKVH 68

Query: 95  --WSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDK 152
             W        L ++LR    +     S    V   E   +A         +F N ++  
Sbjct: 69  RRW--------LRNLLRISYYQAYFMRSDDAGVAW-EATELAKQKLGVYVGRFANGIVRS 119

Query: 153 VSRKEEIK 160
             R+ + +
Sbjct: 120 FMREMDQE 127


>gi|89092289|ref|ZP_01165243.1| Fmu, rRNA SAM-dependent methyltransferase [Oceanospirillum sp.
           MED92]
 gi|89083377|gb|EAR62595.1| Fmu, rRNA SAM-dependent methyltransferase [Oceanospirillum sp.
           MED92]
          Length = 432

 Score = 47.0 bits (111), Expect = 0.001,   Method: Composition-based stats.
 Identities = 15/102 (14%), Positives = 40/102 (39%), Gaps = 3/102 (2%)

Query: 57  VESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELI 116
           +E      D    R + +G +     ++ ++       + +  +D+   ++   G+ ++ 
Sbjct: 30  IERRCADKDRGLLRELCYGTLRYYPQLNRVLQLLQNRPFKYKDIDV--RALALVGLYQIQ 87

Query: 117 ECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEE 158
               +P    I E V    +       K +NA+L +  R+++
Sbjct: 88  HTR-IPAHAAIHETVEACKELNKPGAAKLLNAILRRFQREQD 128


>gi|331684931|ref|ZP_08385517.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
           H299]
 gi|331077302|gb|EGI48514.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
           H299]
          Length = 429

 Score = 47.0 bits (111), Expect = 0.001,   Method: Composition-based stats.
 Identities = 27/147 (18%), Positives = 56/147 (38%), Gaps = 17/147 (11%)

Query: 12  LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71
           +  +R + R  A QA+ Q+   G S + I+               ++      D    + 
Sbjct: 1   MKKQRNL-RSMAAQAVEQVVEQGQSLSNIL-------------PPLQQKVSDKDKALLQE 46

Query: 72  IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
           +  GV+     +D LI+  +    +  +    +  ++  G+ +L+    +P    ++E V
Sbjct: 47  LCFGVLRTLSQLDWLINKLMARPMTGKQ--RTVHYLIMVGLYQLLYTR-IPPHAALAETV 103

Query: 132 CIAHDFFYGDEPKFINAVLDKVSRKEE 158
             A           IN VL +  R++E
Sbjct: 104 EGAIAIKRPQLKGLINGVLRQFQRQQE 130


>gi|297517906|ref|ZP_06936292.1| 16S rRNA methyltransferase B [Escherichia coli OP50]
          Length = 259

 Score = 47.0 bits (111), Expect = 0.001,   Method: Composition-based stats.
 Identities = 27/147 (18%), Positives = 56/147 (38%), Gaps = 17/147 (11%)

Query: 12  LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71
           +  +R + R  A QA+ Q+   G S + I+               ++      D    + 
Sbjct: 1   MKKQRNL-RSMAAQAVEQVVEQGQSLSNIL-------------PPLQQKVSDKDKALLQE 46

Query: 72  IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
           +  GV+     +D LI+  +    +  +    +  ++  G+ +L+    +P    ++E V
Sbjct: 47  LCFGVLRTLSQLDWLINKLMARPMTGKQ--RTVHYLIMVGLYQLLYTR-IPPHAALAETV 103

Query: 132 CIAHDFFYGDEPKFINAVLDKVSRKEE 158
             A           IN VL +  R++E
Sbjct: 104 EGAIAIKRPQLKGLINGVLRQFQRQQE 130


>gi|218550564|ref|YP_002384355.1| 16S rRNA methyltransferase B [Escherichia fergusonii ATCC 35469]
 gi|254766861|sp|B7LRQ5|RSMB_ESCF3 RecName: Full=Ribosomal RNA small subunit methyltransferase B;
           AltName: Full=16S rRNA m5C967 methyltransferase;
           AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
           rsmB
 gi|218358105|emb|CAQ90752.1| 16S rRNA m5C967 methyltransferase,
           S-adenosyl-L-methionine-dependent [Escherichia
           fergusonii ATCC 35469]
 gi|324111967|gb|EGC05946.1| ribosomal RNA small subunit methyltransferase B [Escherichia
           fergusonii B253]
          Length = 429

 Score = 47.0 bits (111), Expect = 0.001,   Method: Composition-based stats.
 Identities = 20/130 (15%), Positives = 49/130 (37%), Gaps = 3/130 (2%)

Query: 29  QIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLIS 88
           Q ++   +   +    E  +  ++    ++      D    + +  GV+     +D LI+
Sbjct: 4   QRNLRSMAAQAVEQVVEQGQSLSNILPPLQQKVSDKDKALLQELCFGVLRTLSQLDWLIN 63

Query: 89  SCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINA 148
             +    +  +    +  ++  G+ +L+    +P    ++E V  A           IN 
Sbjct: 64  KLMARPMTGKQ--RTVHYLIMVGLYQLLYTR-IPPHAALAETVEGAVAIKRPQLKGLING 120

Query: 149 VLDKVSRKEE 158
           VL +  R++E
Sbjct: 121 VLRQFQRQQE 130


>gi|74313807|ref|YP_312226.1| 16S rRNA methyltransferase B [Shigella sonnei Ss046]
 gi|123759539|sp|Q3YWX1|RSMB_SHISS RecName: Full=Ribosomal RNA small subunit methyltransferase B;
           AltName: Full=16S rRNA m5C967 methyltransferase;
           AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
           rsmB
 gi|73857284|gb|AAZ89991.1| conserved hypothetical protein [Shigella sonnei Ss046]
          Length = 429

 Score = 46.6 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 27/147 (18%), Positives = 56/147 (38%), Gaps = 17/147 (11%)

Query: 12  LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71
           +  +R + R  A QA+ Q+   G S + I+               ++      D    + 
Sbjct: 1   MKKQRNL-RSMAAQAVEQVVEQGQSLSNIL-------------PPLQQKVSDKDKALLQE 46

Query: 72  IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
           +  GV+     +D LI+  +    +  +    +  ++  G+ +L+    +P    ++E V
Sbjct: 47  LCFGVLRTLSQLDWLINKLMARPMTGKQ--RTVHYLIMVGLYQLLYTR-IPPHAALAETV 103

Query: 132 CIAHDFFYGDEPKFINAVLDKVSRKEE 158
             A           IN VL +  R++E
Sbjct: 104 EGAIAIKRPQLKGLINGVLRQFQRQQE 130


>gi|320187010|gb|EFW61722.1| Ribosomal RNA small subunit methyltransferase B [Shigella flexneri
           CDC 796-83]
          Length = 429

 Score = 46.6 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 27/147 (18%), Positives = 56/147 (38%), Gaps = 17/147 (11%)

Query: 12  LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71
           +  +R + R  A QA+ Q+   G S + I+               ++      D    + 
Sbjct: 1   MKKQRNL-RSMAAQAVEQVVEQGQSLSNIL-------------PPLQQKVSDKDKALLQE 46

Query: 72  IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
           +  GV+     +D LI+  +    +  +    +  ++  G+ +L+    +P    ++E V
Sbjct: 47  LCFGVLRTLSQLDWLINKLMARPMTGKQ--RTVHYLIMVGLYQLLYTR-IPPHAALAETV 103

Query: 132 CIAHDFFYGDEPKFINAVLDKVSRKEE 158
             A           IN VL +  R++E
Sbjct: 104 EGAIAIKRPQLKGLINGVLRQFQRQQE 130


>gi|300903537|ref|ZP_07121459.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
           MS 84-1]
 gi|301305498|ref|ZP_07211590.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
           MS 124-1]
 gi|300404410|gb|EFJ87948.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
           MS 84-1]
 gi|300839193|gb|EFK66953.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
           MS 124-1]
 gi|315255872|gb|EFU35840.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
           MS 85-1]
          Length = 429

 Score = 46.6 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 27/147 (18%), Positives = 56/147 (38%), Gaps = 17/147 (11%)

Query: 12  LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71
           +  +R + R  A QA+ Q+   G S + I+               ++      D    + 
Sbjct: 1   MKKQRNL-RSMAAQAVEQVVEQGQSLSNIL-------------PPLQQKVSDKDKALLQE 46

Query: 72  IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
           +  GV+     +D LI+  +    +  +    +  ++  G+ +L+    +P    ++E V
Sbjct: 47  LCFGVLRTLSQLDWLINKLMARPMTGKQ--RTVHYLIMVGLYQLLYTR-IPPHAALAETV 103

Query: 132 CIAHDFFYGDEPKFINAVLDKVSRKEE 158
             A           IN VL +  R++E
Sbjct: 104 EGAIAIKRPQLKGLINGVLRQFQRQQE 130


>gi|331654881|ref|ZP_08355880.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
           M718]
 gi|331046896|gb|EGI18974.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
           M718]
          Length = 429

 Score = 46.6 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 27/147 (18%), Positives = 56/147 (38%), Gaps = 17/147 (11%)

Query: 12  LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71
           +  +R + R  A QA+ Q+   G S + I+               ++      D    + 
Sbjct: 1   MKKQRNL-RSMAAQAVEQVVEQGQSLSNIL-------------PPLQQKVSDKDKALLQE 46

Query: 72  IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
           +  GV+     +D LI+  +    +  +    +  ++  G+ +L+    +P    ++E V
Sbjct: 47  LCFGVLRTLSQLDWLINKLMARPMTGKQ--RTVHYLIMVGLYQLLYTR-IPPHAALAETV 103

Query: 132 CIAHDFFYGDEPKFINAVLDKVSRKEE 158
             A           IN VL +  R++E
Sbjct: 104 EGAIAIKRPQLKGLINGVLRQFQRQQE 130


>gi|187732355|ref|YP_001881972.1| 16S rRNA methyltransferase B [Shigella boydii CDC 3083-94]
 gi|224493269|sp|B2U2Q6|RSMB_SHIB3 RecName: Full=Ribosomal RNA small subunit methyltransferase B;
           AltName: Full=16S rRNA m5C967 methyltransferase;
           AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
           rsmB
 gi|187429347|gb|ACD08621.1| ribosomal RNA small subunit methyltransferase B [Shigella boydii
           CDC 3083-94]
          Length = 429

 Score = 46.6 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 27/147 (18%), Positives = 56/147 (38%), Gaps = 17/147 (11%)

Query: 12  LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71
           +  +R + R  A QA+ Q+   G S + I+               ++      D    + 
Sbjct: 1   MKKQRNL-RSMAAQAVEQVVEQGQSLSNIL-------------PPLQQKVSDKDKALLQE 46

Query: 72  IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
           +  GV+     +D LI+  +    +  +    +  ++  G+ +L+    +P    ++E V
Sbjct: 47  LCFGVLRTLSQLDWLINKLMARPMTGKQ--RTVHYLIMVGLYQLLYTR-IPPHAALAETV 103

Query: 132 CIAHDFFYGDEPKFINAVLDKVSRKEE 158
             A           IN VL +  R++E
Sbjct: 104 EGAIAIKRPQLKGLINGVLRQFQRQQE 130


>gi|315617091|gb|EFU97701.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
           3431]
          Length = 429

 Score = 46.6 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 27/147 (18%), Positives = 56/147 (38%), Gaps = 17/147 (11%)

Query: 12  LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71
           +  +R + R  A QA+ Q+   G S + I+               ++      D    + 
Sbjct: 1   MKKQRNL-RSMAAQAVEQVVEQGQSLSNIL-------------PPLQQKVSDKDKALLQE 46

Query: 72  IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
           +  GV+     +D LI+  +    +  +    +  ++  G+ +L+    +P    ++E V
Sbjct: 47  LCFGVLRTLSQLDWLINKLMARPMTGKQ--RTVHYLIMVGLYQLLYTR-IPPHAALAETV 103

Query: 132 CIAHDFFYGDEPKFINAVLDKVSRKEE 158
             A           IN VL +  R++E
Sbjct: 104 EGAIAIKRPQLKGLINGVLRQFQRQQE 130


>gi|293416707|ref|ZP_06659344.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
           B185]
 gi|291431283|gb|EFF04268.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
           B185]
          Length = 429

 Score = 46.6 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 27/147 (18%), Positives = 56/147 (38%), Gaps = 17/147 (11%)

Query: 12  LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71
           +  +R + R  A QA+ Q+   G S + I+               ++      D    + 
Sbjct: 1   MKKQRNL-RSMAAQAVEQVVEQGQSLSNIL-------------PPLQQKVSDKDKALLQE 46

Query: 72  IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
           +  GV+     +D LI+  +    +  +    +  ++  G+ +L+    +P    ++E V
Sbjct: 47  LCFGVLRTLSQLDWLINKLMARPMTGKQ--RTVHYLIMVGLYQLLYTR-IPPHAALAETV 103

Query: 132 CIAHDFFYGDEPKFINAVLDKVSRKEE 158
             A           IN VL +  R++E
Sbjct: 104 EGAIAIKRPQLKGLINGVLRQFQRQQE 130


>gi|262376795|ref|ZP_06070022.1| ribosomal RNA small subunit methyltransferase B [Acinetobacter
           lwoffii SH145]
 gi|262308140|gb|EEY89276.1| ribosomal RNA small subunit methyltransferase B [Acinetobacter
           lwoffii SH145]
          Length = 435

 Score = 46.6 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 29/138 (21%), Positives = 53/138 (38%), Gaps = 25/138 (18%)

Query: 21  LAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRK 80
           L AVQ        G S   +++++              ++    D   +  +  G + + 
Sbjct: 21  LLAVQ-------NGQSLASVLNQHI-------------NIVSERDRGLYHELTLGCLRQW 60

Query: 81  QHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYG 140
             +  +    LT+       +  L S L  G+ +++ C  +P    ISE V  A    + 
Sbjct: 61  HGLKAITLPLLTK--PLD--NQALESCLYLGLYQIL-CTRIPAHAAISETVTAAKQLGFE 115

Query: 141 DEPKFINAVLDKVSRKEE 158
                +NAVL +VSR+ E
Sbjct: 116 PLSGLVNAVLRRVSRETE 133


>gi|82545651|ref|YP_409598.1| 16S rRNA methyltransferase B [Shigella boydii Sb227]
 gi|123728324|sp|Q31VY8|RSMB_SHIBS RecName: Full=Ribosomal RNA small subunit methyltransferase B;
           AltName: Full=16S rRNA m5C967 methyltransferase;
           AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
           rsmB
 gi|81247062|gb|ABB67770.1| conserved hypothetical protein [Shigella boydii Sb227]
 gi|320173933|gb|EFW49109.1| Ribosomal RNA small subunit methyltransferase B [Shigella
           dysenteriae CDC 74-1112]
          Length = 429

 Score = 46.6 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 27/147 (18%), Positives = 56/147 (38%), Gaps = 17/147 (11%)

Query: 12  LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71
           +  +R + R  A QA+ Q+   G S + I+               ++      D    + 
Sbjct: 1   MKKQRNL-RSMAAQAVEQVVEQGQSLSNIL-------------PPLQQKVSDKDKALLQE 46

Query: 72  IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
           +  GV+     +D LI+  +    +  +    +  ++  G+ +L+    +P    ++E V
Sbjct: 47  LCFGVLRTLSQLDWLINKLMARPMTGKQ--RTVHYLIMVGLYQLLYTR-IPPHAALAETV 103

Query: 132 CIAHDFFYGDEPKFINAVLDKVSRKEE 158
             A           IN VL +  R++E
Sbjct: 104 EGAIAIKRPQLKGLINGVLRQFQRQQE 130


>gi|312864944|ref|ZP_07725174.1| ribosomal RNA small subunit methyltransferase B [Streptococcus
           downei F0415]
 gi|311099564|gb|EFQ57778.1| ribosomal RNA small subunit methyltransferase B [Streptococcus
           downei F0415]
          Length = 439

 Score = 46.6 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 26/145 (17%), Positives = 54/145 (37%), Gaps = 15/145 (10%)

Query: 12  LSHR-RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFR 70
           +++R    AR  A++ L           E+  E   Y   A       S     D     
Sbjct: 1   MANRLEKSARGLALKIL----------EEVFQE-GAYSNLALKRGLSGSSLSQQDKALVT 49

Query: 71  VIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEY 130
            +++G + RK  ++  ++  + ++         L  +    +   +    +P   +++E 
Sbjct: 50  ELVYGTVARKITLEWQLAHVIEDRDKLESWVYTLLMLSLYQL---LYLDKIPSHAVLNEA 106

Query: 131 VCIAHDFFYGDEPKFINAVLDKVSR 155
           V +A         K +NAVL K+S+
Sbjct: 107 VELAKSRSQRGADKLVNAVLRKLSK 131


>gi|182415839|ref|YP_001820905.1| Fmu (Sun) domain-containing protein [Opitutus terrae PB90-1]
 gi|177843053|gb|ACB77305.1| Fmu (Sun) domain protein [Opitutus terrae PB90-1]
          Length = 488

 Score = 46.6 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 20/145 (13%), Positives = 43/145 (29%), Gaps = 32/145 (22%)

Query: 37  TTEIISEYETYRFCADTELD-VESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKW 95
              +++ +   R   D  L+ +       +    + ++ G +     ID  I   ++   
Sbjct: 15  AARLLARWLDRRERVDELLESLGGSLTGTERARCQHLVFGAIRHFGRIDAAIGRLVSHSP 74

Query: 96  SFSRLDMILCSILRAGVLELI-------------------ECHSVPVEVI-------ISE 129
            F+       ++L     ELI                        P  V+       +  
Sbjct: 75  RFA-----TRAVLLVAGFELIEARAERGGAPTRASEAGTTNAPDQPTPVVDGRVAKIVHH 129

Query: 130 YVCIAHDFFYGDEPKFINAVLDKVS 154
            V          E + +NAV+ K++
Sbjct: 130 AVEQTKQLASPAEARMVNAVVRKLA 154


>gi|83309246|ref|YP_419510.1| tRNA and rRNA cytosine-C5-methylase [Magnetospirillum magneticum
           AMB-1]
 gi|82944087|dbj|BAE48951.1| tRNA and rRNA cytosine-C5-methylase [Magnetospirillum magneticum
           AMB-1]
          Length = 431

 Score = 46.6 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 29/137 (21%), Positives = 49/137 (35%), Gaps = 15/137 (10%)

Query: 20  RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79
           R  AV  L  +   G    +++ +    R                D  + R+++   + R
Sbjct: 10  RAIAVDLLSMVLDKGRLLDDVLDDSRLSRLE------------DRDRGFVRMLLGTTLRR 57

Query: 80  KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139
              ID LI  CL +            + LR G+ +L+    V     IS  V +      
Sbjct: 58  LGQIDTLIEHCLDKPMRAGAAGA-EHA-LRLGICQLLF-LDVAPHAAISTTVDLVKGSKL 114

Query: 140 GDEPKFINAVLDKVSRK 156
               K +NAVL ++ R+
Sbjct: 115 AGFAKLLNAVLRRLDRE 131


>gi|323173925|gb|EFZ59553.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
           LT-68]
          Length = 429

 Score = 46.6 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 20/130 (15%), Positives = 49/130 (37%), Gaps = 3/130 (2%)

Query: 29  QIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLIS 88
           Q ++   +   +    E  +  ++    ++      D    + +  GV+     +D LI+
Sbjct: 4   QRNLRSMAAQAVEQVVEQGQSLSNILPPLQQKVSDKDKALLQELCFGVLRTLSQLDWLIN 63

Query: 89  SCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINA 148
             +    +  +    +  ++  G+ +L+    +P    ++E V  A           IN 
Sbjct: 64  KLMARPMTGKQ--RTVHYLIMVGLYQLLYTR-IPPHAALAETVEGAIAIKRPQLKGLING 120

Query: 149 VLDKVSRKEE 158
           VL +  R++E
Sbjct: 121 VLRQFQRQQE 130


>gi|161870942|ref|YP_001600122.1| 16S RNA methyltransferase [Neisseria meningitidis 053442]
 gi|161596495|gb|ABX74155.1| 16S RNA methyltransferase [Neisseria meningitidis 053442]
          Length = 419

 Score = 46.6 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 25/126 (19%), Positives = 49/126 (38%), Gaps = 17/126 (13%)

Query: 34  GCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTE 93
           G +  ++++E       A  +L  +      D+ +      G       +  +++  L +
Sbjct: 20  GRNLQDVLAEIRA----AHPQLTAQENGALQDIAY------GCQRYLGSLKHMLAQMLKK 69

Query: 94  KWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVC-IAHDFFYGDEPKFINAVLDK 152
                  +  L S+L A + +L    + P  V+ +E V  IA     G    F NAVL +
Sbjct: 70  --PID--NPQLESLLLAALYQLHYTRNAPHAVV-NEAVESIAKI-GRGQYRSFANAVLRR 123

Query: 153 VSRKEE 158
             R+ +
Sbjct: 124 FLRERD 129


>gi|157157639|ref|YP_001464756.1| 16S rRNA methyltransferase B [Escherichia coli E24377A]
 gi|193066472|ref|ZP_03047516.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
           E22]
 gi|193071559|ref|ZP_03052468.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
           E110019]
 gi|194430276|ref|ZP_03062771.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
           B171]
 gi|209920754|ref|YP_002294838.1| 16S rRNA methyltransferase B [Escherichia coli SE11]
 gi|218555846|ref|YP_002388759.1| 16S rRNA methyltransferase B [Escherichia coli IAI1]
 gi|218696981|ref|YP_002404648.1| 16S rRNA methyltransferase B [Escherichia coli 55989]
 gi|256020647|ref|ZP_05434512.1| 16S rRNA methyltransferase B [Shigella sp. D9]
 gi|260846086|ref|YP_003223864.1| 16S rRNA m5C967 methyltransferase,
           S-adenosyl-L-methionine-dependent [Escherichia coli
           O103:H2 str. 12009]
 gi|293453607|ref|ZP_06664026.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
           B088]
 gi|300815501|ref|ZP_07095726.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
           MS 107-1]
 gi|300822908|ref|ZP_07103044.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
           MS 119-7]
 gi|300918263|ref|ZP_07134867.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
           MS 115-1]
 gi|300921903|ref|ZP_07138058.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
           MS 182-1]
 gi|301325146|ref|ZP_07218678.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
           MS 78-1]
 gi|307315133|ref|ZP_07594716.1| sun protein [Escherichia coli W]
 gi|309794564|ref|ZP_07688986.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
           MS 145-7]
 gi|331670118|ref|ZP_08370957.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
           TA271]
 gi|331679357|ref|ZP_08380027.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
           H591]
 gi|332281843|ref|ZP_08394256.1| 16S rRNA m5C967 methyltransferase S-adenosyl-L-methionine-dependent
           [Shigella sp. D9]
 gi|224493245|sp|A7ZSH7|RSMB_ECO24 RecName: Full=Ribosomal RNA small subunit methyltransferase B;
           AltName: Full=16S rRNA m5C967 methyltransferase;
           AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
           rsmB
 gi|254766855|sp|B7LHZ0|RSMB_ECO55 RecName: Full=Ribosomal RNA small subunit methyltransferase B;
           AltName: Full=16S rRNA m5C967 methyltransferase;
           AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
           rsmB
 gi|254766858|sp|B7M0Z4|RSMB_ECO8A RecName: Full=Ribosomal RNA small subunit methyltransferase B;
           AltName: Full=16S rRNA m5C967 methyltransferase;
           AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
           rsmB
 gi|254766860|sp|B6I202|RSMB_ECOSE RecName: Full=Ribosomal RNA small subunit methyltransferase B;
           AltName: Full=16S rRNA m5C967 methyltransferase;
           AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
           rsmB
 gi|157079669|gb|ABV19377.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
           E24377A]
 gi|192925853|gb|EDV80503.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
           E22]
 gi|192955147|gb|EDV85641.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
           E110019]
 gi|194411665|gb|EDX27992.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
           B171]
 gi|209914013|dbj|BAG79087.1| putative rRNA methylase [Escherichia coli SE11]
 gi|218353713|emb|CAU99984.1| 16S rRNA m5C967 methyltransferase,
           S-adenosyl-L-methionine-dependent [Escherichia coli
           55989]
 gi|218362614|emb|CAR00240.1| 16S rRNA m5C967 methyltransferase,
           S-adenosyl-L-methionine-dependent [Escherichia coli
           IAI1]
 gi|257761233|dbj|BAI32730.1| 16S rRNA m5C967 methyltransferase,
           S-adenosyl-L-methionine-dependent [Escherichia coli
           O103:H2 str. 12009]
 gi|291321733|gb|EFE61164.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
           B088]
 gi|300414524|gb|EFJ97834.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
           MS 115-1]
 gi|300421704|gb|EFK05015.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
           MS 182-1]
 gi|300524674|gb|EFK45743.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
           MS 119-7]
 gi|300532393|gb|EFK53455.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
           MS 107-1]
 gi|300847978|gb|EFK75738.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
           MS 78-1]
 gi|306905482|gb|EFN36017.1| sun protein [Escherichia coli W]
 gi|308121614|gb|EFO58876.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
           MS 145-7]
 gi|315062580|gb|ADT76907.1| 16S rRNA m5C967 methyltransferase,
           S-adenosyl-L-methionine-dependent [Escherichia coli W]
 gi|323162967|gb|EFZ48802.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
           E128010]
 gi|323182767|gb|EFZ68168.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
           1357]
 gi|323376833|gb|ADX49101.1| sun protein [Escherichia coli KO11]
 gi|323944291|gb|EGB40367.1| ribosomal RNA small methyltransferase B [Escherichia coli H120]
 gi|324017855|gb|EGB87074.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
           MS 117-3]
 gi|324116322|gb|EGC10242.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
           E1167]
 gi|331062180|gb|EGI34100.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
           TA271]
 gi|331072529|gb|EGI43854.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
           H591]
 gi|332104195|gb|EGJ07541.1| 16S rRNA m5C967 methyltransferase S-adenosyl-L-methionine-dependent
           [Shigella sp. D9]
          Length = 429

 Score = 46.6 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 20/130 (15%), Positives = 49/130 (37%), Gaps = 3/130 (2%)

Query: 29  QIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLIS 88
           Q ++   +   +    E  +  ++    ++      D    + +  GV+     +D LI+
Sbjct: 4   QRNLRSMAAQAVEQVVEQGQSLSNILPPLQQKVSDKDKALLQELCFGVLRTLSQLDWLIN 63

Query: 89  SCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINA 148
             +    +  +    +  ++  G+ +L+    +P    ++E V  A           IN 
Sbjct: 64  KLMARPMTGKQ--RTVHYLIMVGLYQLLYTR-IPPHAALAETVEGAIAIKRPQLKGLING 120

Query: 149 VLDKVSRKEE 158
           VL +  R++E
Sbjct: 121 VLRQFQRQQE 130


>gi|16131168|ref|NP_417747.1| 16S rRNA m(5)C967 methyltransferase,
           S-adenosyl-L-methionine-dependent [Escherichia coli str.
           K-12 substr. MG1655]
 gi|89110722|ref|AP_004502.1| 16S rRNA m5C967 methyltransferase,
           S-adenosyl-L-methionine-dependent [Escherichia coli str.
           K-12 substr. W3110]
 gi|157162762|ref|YP_001460080.1| 16S rRNA methyltransferase B [Escherichia coli HS]
 gi|170018476|ref|YP_001723430.1| 16S rRNA methyltransferase B [Escherichia coli ATCC 8739]
 gi|170082809|ref|YP_001732129.1| 16S rRNA m5C967 methyltransferase,
           S-adenosyl-L-methionine-dependent [Escherichia coli str.
           K-12 substr. DH10B]
 gi|188493203|ref|ZP_03000473.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
           53638]
 gi|194439994|ref|ZP_03072052.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
           101-1]
 gi|238902379|ref|YP_002928175.1| 16S rRNA m5C967 methyltransferase,
           S-adenosyl-L-methionine-dependent [Escherichia coli
           BW2952]
 gi|253771888|ref|YP_003034719.1| 16S rRNA methyltransferase B [Escherichia coli 'BL21-Gold(DE3)pLysS
           AG']
 gi|254038449|ref|ZP_04872505.1| ribosomal RNA small subunit methyltransferase B [Escherichia sp.
           1_1_43]
 gi|254163216|ref|YP_003046324.1| 16S rRNA methyltransferase B [Escherichia coli B str. REL606]
 gi|256025984|ref|ZP_05439849.1| 16S rRNA methyltransferase B [Escherichia sp. 4_1_40B]
 gi|300932181|ref|ZP_07147461.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
           MS 187-1]
 gi|300946510|ref|ZP_07160776.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
           MS 116-1]
 gi|300955326|ref|ZP_07167708.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
           MS 175-1]
 gi|301021178|ref|ZP_07185214.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
           MS 196-1]
 gi|301643892|ref|ZP_07243922.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
           MS 146-1]
 gi|307139971|ref|ZP_07499327.1| 16S rRNA methyltransferase B [Escherichia coli H736]
 gi|312972450|ref|ZP_07786624.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
           1827-70]
 gi|331643984|ref|ZP_08345113.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
           H736]
 gi|1169715|sp|P36929|RSMB_ECOLI RecName: Full=Ribosomal RNA small subunit methyltransferase B;
           AltName: Full=16S rRNA m5C967 methyltransferase;
           AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
           rsmB
 gi|224493247|sp|B1X6E1|RSMB_ECODH RecName: Full=Ribosomal RNA small subunit methyltransferase B;
           AltName: Full=16S rRNA m5C967 methyltransferase;
           AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
           rsmB
 gi|224493248|sp|A8A593|RSMB_ECOHS RecName: Full=Ribosomal RNA small subunit methyltransferase B;
           AltName: Full=16S rRNA m5C967 methyltransferase;
           AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
           rsmB
 gi|224493250|sp|B1IQ11|RSMB_ECOLC RecName: Full=Ribosomal RNA small subunit methyltransferase B;
           AltName: Full=16S rRNA m5C967 methyltransferase;
           AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
           rsmB
 gi|259495485|sp|C4ZUE3|RSMB_ECOBW RecName: Full=Ribosomal RNA small subunit methyltransferase B;
           AltName: Full=16S rRNA m5C967 methyltransferase;
           AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
           rsmB
 gi|49259108|pdb|1SQF|A Chain A, The Crystal Structure Of E. Coli Fmu Binary Complex With
           S- Adenosylmethionine At 2.1 A Resolution
 gi|49259109|pdb|1SQG|A Chain A, The Crystal Structure Of The E. Coli Fmu Apoenzyme At 1.65
           A Resolution
 gi|1772512|emb|CAA71359.1| sun [Escherichia coli str. K-12 substr. MG1655]
 gi|2367212|gb|AAC76314.1| 16S rRNA m(5)C967 methyltransferase,
           S-adenosyl-L-methionine-dependent [Escherichia coli str.
           K-12 substr. MG1655]
 gi|85676753|dbj|BAE78003.1| 16S rRNA m5C967 methyltransferase,
           S-adenosyl-L-methionine-dependent [Escherichia coli str.
           K12 substr. W3110]
 gi|157068442|gb|ABV07697.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
           HS]
 gi|169753404|gb|ACA76103.1| sun protein [Escherichia coli ATCC 8739]
 gi|169890644|gb|ACB04351.1| 16S rRNA m5C967 methyltransferase,
           S-adenosyl-L-methionine-dependent [Escherichia coli str.
           K-12 substr. DH10B]
 gi|188488402|gb|EDU63505.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
           53638]
 gi|194421046|gb|EDX37075.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
           101-1]
 gi|226838955|gb|EEH70978.1| ribosomal RNA small subunit methyltransferase B [Escherichia sp.
           1_1_43]
 gi|238859734|gb|ACR61732.1| 16S rRNA m5C967 methyltransferase,
           S-adenosyl-L-methionine-dependent [Escherichia coli
           BW2952]
 gi|242378815|emb|CAQ33607.1| 16S rRNA m[5]C967 methyltransferase [Escherichia coli BL21(DE3)]
 gi|253322932|gb|ACT27534.1| sun protein [Escherichia coli 'BL21-Gold(DE3)pLysS AG']
 gi|253975117|gb|ACT40788.1| 16S rRNA m5C967 methyltransferase,
           S-adenosyl-L-methionine-dependent [Escherichia coli B
           str. REL606]
 gi|253979273|gb|ACT44943.1| 16S rRNA m5C967 methyltransferase,
           S-adenosyl-L-methionine-dependent [Escherichia coli
           BL21(DE3)]
 gi|260447693|gb|ACX38115.1| sun protein [Escherichia coli DH1]
 gi|299881625|gb|EFI89836.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
           MS 196-1]
 gi|300317770|gb|EFJ67554.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
           MS 175-1]
 gi|300453816|gb|EFK17436.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
           MS 116-1]
 gi|300460065|gb|EFK23558.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
           MS 187-1]
 gi|301077735|gb|EFK92541.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
           MS 146-1]
 gi|309703700|emb|CBJ03041.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
           ETEC H10407]
 gi|310334827|gb|EFQ01032.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
           1827-70]
 gi|315137864|dbj|BAJ45023.1| 16S rRNA methyltransferase B [Escherichia coli DH1]
 gi|323934513|gb|EGB30921.1| ribosomal RNA small methyltransferase B [Escherichia coli E1520]
 gi|323939290|gb|EGB35502.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
           E482]
 gi|323959561|gb|EGB55214.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
           H489]
 gi|323970092|gb|EGB65366.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
           TA007]
 gi|331036278|gb|EGI08504.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
           H736]
 gi|332345236|gb|AEE58570.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
           UMNK88]
          Length = 429

 Score = 46.6 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 20/130 (15%), Positives = 49/130 (37%), Gaps = 3/130 (2%)

Query: 29  QIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLIS 88
           Q ++   +   +    E  +  ++    ++      D    + +  GV+     +D LI+
Sbjct: 4   QRNLRSMAAQAVEQVVEQGQSLSNILPPLQQKVSDKDKALLQELCFGVLRTLSQLDWLIN 63

Query: 89  SCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINA 148
             +    +  +    +  ++  G+ +L+    +P    ++E V  A           IN 
Sbjct: 64  KLMARPMTGKQ--RTVHYLIMVGLYQLLYTR-IPPHAALAETVEGAIAIKRPQLKGLING 120

Query: 149 VLDKVSRKEE 158
           VL +  R++E
Sbjct: 121 VLRQFQRQQE 130


>gi|304388913|ref|ZP_07370960.1| ribosomal RNA small subunit methyltransferase B [Neisseria
           meningitidis ATCC 13091]
 gi|304337047|gb|EFM03234.1| ribosomal RNA small subunit methyltransferase B [Neisseria
           meningitidis ATCC 13091]
 gi|325203231|gb|ADY98684.1| ribosomal RNA small subunit methyltransferase B [Neisseria
           meningitidis M01-240355]
          Length = 419

 Score = 46.6 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 25/126 (19%), Positives = 50/126 (39%), Gaps = 17/126 (13%)

Query: 34  GCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTE 93
           G +  +++++  T    A  +L  +      D+ +      G       +  +++  L +
Sbjct: 20  GRNLQDVLAQIRT----AHPDLTAQENGALQDIAY------GCQRYLGSLKHMLAQMLKK 69

Query: 94  KWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVC-IAHDFFYGDEPKFINAVLDK 152
                  +  L S+L A + +L    + P  V+ +E V  IA     G    F NAVL +
Sbjct: 70  --PID--NPQLESLLLAALYQLHYTRNAPHAVV-NEAVESIAKI-GRGQYRSFANAVLRR 123

Query: 153 VSRKEE 158
             R+ +
Sbjct: 124 FLRERD 129


>gi|293412707|ref|ZP_06655375.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
           B354]
 gi|301018854|ref|ZP_07183093.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
           MS 69-1]
 gi|291468354|gb|EFF10847.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
           B354]
 gi|300399511|gb|EFJ83049.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
           MS 69-1]
          Length = 429

 Score = 46.6 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 20/130 (15%), Positives = 49/130 (37%), Gaps = 3/130 (2%)

Query: 29  QIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLIS 88
           Q ++   +   +    E  +  ++    ++      D    + +  GV+     +D LI+
Sbjct: 4   QRNLRSMAAQAVEQVVEQGQSLSNILPPLQQKVSDKDKALLQELCFGVLRTLSQLDWLIN 63

Query: 89  SCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINA 148
             +    +  +    +  ++  G+ +L+    +P    ++E V  A           IN 
Sbjct: 64  KLMARPMTGKQ--RTVHYLIMVGLYQLLYTR-IPPHAALAETVEGAIAIKRPQLKGLING 120

Query: 149 VLDKVSRKEE 158
           VL +  R++E
Sbjct: 121 VLRQFQRQQE 130


>gi|325145434|gb|EGC67710.1| ribosomal RNA small subunit methyltransferase B [Neisseria
           meningitidis M01-240013]
          Length = 419

 Score = 46.6 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 25/126 (19%), Positives = 50/126 (39%), Gaps = 17/126 (13%)

Query: 34  GCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTE 93
           G +  +++++  T    A  +L  +      D+ +      G       +  +++  L +
Sbjct: 20  GRNLQDVLAQIRT----AHPDLTAQENGALQDIAY------GCQRYLGSLKHMLAQMLKK 69

Query: 94  KWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVC-IAHDFFYGDEPKFINAVLDK 152
                  +  L S+L A + +L    + P  V+ +E V  IA     G    F NAVL +
Sbjct: 70  --PID--NPQLESLLLAALYQLHYTRNAPHAVV-NEAVESIAKI-GRGQYRSFANAVLRR 123

Query: 153 VSRKEE 158
             R+ +
Sbjct: 124 FLRERD 129


>gi|320199476|gb|EFW74066.1| Ribosomal RNA small subunit methyltransferase B [Escherichia coli
           EC4100B]
          Length = 429

 Score = 46.6 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 20/130 (15%), Positives = 49/130 (37%), Gaps = 3/130 (2%)

Query: 29  QIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLIS 88
           Q ++   +   +    E  +  ++    ++      D    + +  GV+     +D LI+
Sbjct: 4   QRNLRSMAAQAVEQVVEQGQSLSNILPPLQQKVSDKDKALLQELCFGVLRTLSQLDWLIN 63

Query: 89  SCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINA 148
             +    +  +    +  ++  G+ +L+    +P    ++E V  A           IN 
Sbjct: 64  KLMARPMTGKQ--RTVHYLIMVGLYQLLYTR-IPPHAALAETVEGAIAIKRPQLKGLING 120

Query: 149 VLDKVSRKEE 158
           VL +  R++E
Sbjct: 121 VLRQFQRQQE 130


>gi|331674796|ref|ZP_08375553.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
           TA280]
 gi|331067705|gb|EGI39103.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
           TA280]
          Length = 429

 Score = 46.6 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 20/130 (15%), Positives = 49/130 (37%), Gaps = 3/130 (2%)

Query: 29  QIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLIS 88
           Q ++   +   +    E  +  ++    ++      D    + +  GV+     +D LI+
Sbjct: 4   QRNLRSMAAQAVEQVVEQGQSLSNILPPLQQKVSDKDKALLQELCFGVLRTLSQLDWLIN 63

Query: 89  SCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINA 148
             +    +  +    +  ++  G+ +L+    +P    ++E V  A           IN 
Sbjct: 64  KLMARPMTGKQ--RTVHYLIMVGLYQLLYTR-IPPHAALAETVEGAIAIKRPQLKGLING 120

Query: 149 VLDKVSRKEE 158
           VL +  R++E
Sbjct: 121 VLRQFQRQQE 130


>gi|331659579|ref|ZP_08360517.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
           TA206]
 gi|331052794|gb|EGI24827.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
           TA206]
          Length = 429

 Score = 46.6 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 25/147 (17%), Positives = 56/147 (38%), Gaps = 17/147 (11%)

Query: 12  LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71
           +  +R + R  A QA+ Q+   G S + I+               ++      D    + 
Sbjct: 1   MKKQRNL-RSMAAQAIEQVVEQGQSLSNIL-------------PPLQQKISDKDKALLQE 46

Query: 72  IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
           +  GV+     +D LI+  +    +  +    +  ++  G+ +L+    +P    ++E V
Sbjct: 47  LCFGVLRTLSQLDWLINKLMARPMTGKQ--RTVHYLIMVGLYQLLYTR-IPPHAALAETV 103

Query: 132 CIAHDFFYGDEPKFINAVLDKVSRKEE 158
             A           IN +L +  R+++
Sbjct: 104 EGAVAIKRPQLKGLINGILRQFQRQQD 130


>gi|148261637|ref|YP_001235764.1| Fmu (Sun) domain-containing protein [Acidiphilium cryptum JF-5]
 gi|146403318|gb|ABQ31845.1| Fmu (Sun) domain protein [Acidiphilium cryptum JF-5]
          Length = 415

 Score = 46.6 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 22/79 (27%), Positives = 31/79 (39%), Gaps = 6/79 (7%)

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
           V+ R   +D ++   L           +   ILR G  +L      P    +S  V +AH
Sbjct: 52  VLRRLGSLDAILEPHLRRAPP----APV-RHILRIGAAQL-ALLGAPAHAAVSTAVGLAH 105

Query: 136 DFFYGDEPKFINAVLDKVS 154
               G     +NAVL KVS
Sbjct: 106 ARGLGKFAGLVNAVLRKVS 124


>gi|309378544|emb|CBX22816.1| unnamed protein product [Neisseria lactamica Y92-1009]
          Length = 419

 Score = 46.6 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 24/119 (20%), Positives = 45/119 (37%), Gaps = 13/119 (10%)

Query: 41  ISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRL 100
           + +   +   A  +L  +      D+ +      G       +  +++  L +       
Sbjct: 23  LQDVLVHIRAAHPDLTAQENGALQDIAY------GCQRYLGSLKHMLAQMLKK--PID-- 72

Query: 101 DMILCSILRAGVLELIECHSVPVEVIISEYVC-IAHDFFYGDEPKFINAVLDKVSRKEE 158
           +  L S+L A + +L    + P  V+ +E V  IA     G    F NAVL +  R+ E
Sbjct: 73  NPQLESLLLAALYQLHYTRNAPHAVV-NEAVESIAKI-GRGQYRSFANAVLRRFLRERE 129


>gi|306832887|ref|ZP_07466020.1| ribosomal RNA small subunit methyltransferase B [Streptococcus
           bovis ATCC 700338]
 gi|304424962|gb|EFM28095.1| ribosomal RNA small subunit methyltransferase B [Streptococcus
           bovis ATCC 700338]
          Length = 440

 Score = 46.6 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 28/143 (19%), Positives = 59/143 (41%), Gaps = 15/143 (10%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           +  AR  A+  L           E + E   Y   A  +    +     D      I++G
Sbjct: 6   KNQARGLALLVL-----------ENVFEDGAYSNIALNQELSHTTLSPKDKPLVTEIVYG 54

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
            + RK  ++  ++  + ++    +LD  +  +L   + +L+    +P   ++++ V IA 
Sbjct: 55  TVARKITLEWYLAHYIKDR---DKLDFWVYYLLMLSLYQLLYLDKIPAHAVVNDAVNIAK 111

Query: 136 DFFYGDEP-KFINAVLDKVSRKE 157
           +        KF+NAVL + + +E
Sbjct: 112 NRGNKKGAEKFVNAVLRRFTEEE 134


>gi|326405127|ref|YP_004285209.1| RNA methyltransferase [Acidiphilium multivorum AIU301]
 gi|325051989|dbj|BAJ82327.1| RNA methyltransferase [Acidiphilium multivorum AIU301]
          Length = 418

 Score = 46.6 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 22/79 (27%), Positives = 31/79 (39%), Gaps = 6/79 (7%)

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
           V+ R   +D ++   L           +   ILR G  +L      P    +S  V +AH
Sbjct: 55  VLRRLGSLDAILEPHLRRAPP----APV-RHILRIGAAQL-ALLGAPAHAAVSTAVGLAH 108

Query: 136 DFFYGDEPKFINAVLDKVS 154
               G     +NAVL KVS
Sbjct: 109 ARGLGKFAGLVNAVLRKVS 127


>gi|154243996|ref|YP_001414954.1| sun protein [Xanthobacter autotrophicus Py2]
 gi|154158081|gb|ABS65297.1| sun protein [Xanthobacter autotrophicus Py2]
          Length = 471

 Score = 46.6 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 27/147 (18%), Positives = 52/147 (35%), Gaps = 26/147 (17%)

Query: 18  IARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVM 77
            AR+ AV  L               +   +    +  LD +      D      I+   +
Sbjct: 46  AARILAVDGL--------------EQVLRHGAALEDALDADVALDPRDRALAYRILATSL 91

Query: 78  DRKQHIDLLISSCLTEKWSFS--RLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
            R   +  LI+  +      S  RL+ +L +    G  +++    VP    +   V +A 
Sbjct: 92  RRIGTLRALIAKLMERGLPKSAPRLESVLLA----GATQILFM-DVPNHAAVGLCVDVAR 146

Query: 136 DFFYGDEPKF---INAVLDKVSRKEEI 159
                +   F   +NAVL +++R+ + 
Sbjct: 147 A--DRNTAGFAGLVNAVLRRLTREADA 171


>gi|170684100|ref|YP_001745551.1| 16S rRNA methyltransferase B [Escherichia coli SMS-3-5]
 gi|224493251|sp|B1LGP5|RSMB_ECOSM RecName: Full=Ribosomal RNA small subunit methyltransferase B;
           AltName: Full=16S rRNA m5C967 methyltransferase;
           AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
           rsmB
 gi|170521818|gb|ACB19996.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
           SMS-3-5]
          Length = 429

 Score = 46.6 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 20/130 (15%), Positives = 49/130 (37%), Gaps = 3/130 (2%)

Query: 29  QIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLIS 88
           Q ++   +   +    E  +  ++    ++      D    + +  GV+     +D LI+
Sbjct: 4   QRNLRSMAAQAVEQVVEQGQSLSNILPPLQQKVSDKDKALLQELCFGVLRTLSQLDWLIN 63

Query: 89  SCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINA 148
             +    +  +    +  ++  G+ +L+    +P    ++E V  A           IN 
Sbjct: 64  KLMARPMTGKQ--RTVHYLIMVGLYQLLYTR-IPPHAALAETVEGAIAIKRPQLKGLING 120

Query: 149 VLDKVSRKEE 158
           VL +  R++E
Sbjct: 121 VLRQFQRQQE 130


>gi|606223|gb|AAA58086.1| we have one ORF, ECFMT has fmu and fmv [Escherichia coli str. K-12
           substr. MG1655]
          Length = 386

 Score = 46.6 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 20/130 (15%), Positives = 49/130 (37%), Gaps = 3/130 (2%)

Query: 29  QIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLIS 88
           Q ++   +   +    E  +  ++    ++      D    + +  GV+     +D LI+
Sbjct: 4   QRNLRSMAAQAVEQVVEQGQSLSNILPPLQQKVSDKDKALLQELCFGVLRTLSQLDWLIN 63

Query: 89  SCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINA 148
             +    +  +    +  ++  G+ +L+    +P    ++E V  A           IN 
Sbjct: 64  KLMARPMTGKQ--RTVHYLIMVGLYQLLYTR-IPPHAALAETVEGAIAIKRPQLKGLING 120

Query: 149 VLDKVSRKEE 158
           VL +  R++E
Sbjct: 121 VLRQFQRQQE 130


>gi|194435072|ref|ZP_03067310.1| ribosomal RNA small subunit methyltransferase B [Shigella
           dysenteriae 1012]
 gi|194416679|gb|EDX32810.1| ribosomal RNA small subunit methyltransferase B [Shigella
           dysenteriae 1012]
 gi|320182714|gb|EFW57600.1| Ribosomal RNA small subunit methyltransferase B [Shigella boydii
           ATCC 9905]
 gi|332086286|gb|EGI91442.1| ribosomal RNA small subunit methyltransferase B [Shigella
           dysenteriae 155-74]
          Length = 429

 Score = 46.6 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 20/130 (15%), Positives = 49/130 (37%), Gaps = 3/130 (2%)

Query: 29  QIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLIS 88
           Q ++   +   +    E  +  ++    ++      D    + +  GV+     +D LI+
Sbjct: 4   QRNLRSMAAQAVEQVVEQGQSLSNILPPLQQKVSDKDKALLQELCFGVLRTLSQLDWLIN 63

Query: 89  SCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINA 148
             +    +  +    +  ++  G+ +L+    +P    ++E V  A           IN 
Sbjct: 64  KLMARPMTGKQ--RTVHYLIMVGLYQLLYTR-IPPHAALAETVEGAIAIKRPQLKGLING 120

Query: 149 VLDKVSRKEE 158
           VL +  R++E
Sbjct: 121 VLRQFQRRQE 130


>gi|59802189|ref|YP_208901.1| putative 16S RNA methyltransferase [Neisseria gonorrhoeae FA 1090]
 gi|59719084|gb|AAW90489.1| putative 16S RNA methyltransferase [Neisseria gonorrhoeae FA 1090]
          Length = 419

 Score = 46.6 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 24/119 (20%), Positives = 45/119 (37%), Gaps = 13/119 (10%)

Query: 41  ISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRL 100
           + +   +   A  +L  +      D+ +      G       +  +++  L +       
Sbjct: 23  LQDVLAHIRAAHPQLTAQENGALQDIAY------GCQRYLGSLKHMLAQMLKK--PID-- 72

Query: 101 DMILCSILRAGVLELIECHSVPVEVIISEYVC-IAHDFFYGDEPKFINAVLDKVSRKEE 158
           +  L S+L A + +L    + P  V+ +E V  IA     G    F NAVL +  R+ E
Sbjct: 73  NPQLESLLLAALYQLHYTRNAPHAVV-NEAVESIAKI-GRGQYRSFANAVLRRFLRERE 129


>gi|325135221|gb|EGC57846.1| ribosomal RNA small subunit methyltransferase B [Neisseria
           meningitidis M13399]
          Length = 419

 Score = 46.2 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 23/119 (19%), Positives = 45/119 (37%), Gaps = 13/119 (10%)

Query: 41  ISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRL 100
           + +   +   A  +L  +      D+ +      G       +  +++  L +       
Sbjct: 23  LQDVLAHIRAAHPDLTAQENGALQDIAY------GCQRYLGSLKHMLAQMLKK--PID-- 72

Query: 101 DMILCSILRAGVLELIECHSVPVEVIISEYVC-IAHDFFYGDEPKFINAVLDKVSRKEE 158
           +  L S+L A + +L    + P  V+ +E V  IA     G    F NAVL +  R+ +
Sbjct: 73  NPQLESLLLAALYQLHYTRNAPHAVV-NEAVESIAKI-GRGQYRSFANAVLRRFLRERD 129


>gi|281602657|gb|ADA75641.1| Ribosomal RNA small subunit methyltransferase B [Shigella flexneri
           2002017]
          Length = 436

 Score = 46.2 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 20/130 (15%), Positives = 49/130 (37%), Gaps = 3/130 (2%)

Query: 29  QIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLIS 88
           Q ++   +   +    E  +  ++    ++      D    + +  GV+     +D LI+
Sbjct: 11  QRNLRSMAAQAVEQVVEQGQSLSNILPPLQQKVSDKDKALLQELCFGVLRTLSQLDWLIN 70

Query: 89  SCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINA 148
             +    +  +    +  ++  G+ +L+    +P    ++E V  A           IN 
Sbjct: 71  KLMARPMTGKQ--RTVHYLIMVGLYQLLYTR-IPPHAALAETVEGAIAIKRPQLKGLING 127

Query: 149 VLDKVSRKEE 158
           VL +  R++E
Sbjct: 128 VLRQFQRRQE 137


>gi|110807136|ref|YP_690656.1| 16S rRNA methyltransferase B [Shigella flexneri 5 str. 8401]
 gi|110616684|gb|ABF05351.1| conserved hypothetical protein [Shigella flexneri 5 str. 8401]
          Length = 436

 Score = 46.2 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 20/130 (15%), Positives = 49/130 (37%), Gaps = 3/130 (2%)

Query: 29  QIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLIS 88
           Q ++   +   +    E  +  ++    ++      D    + +  GV+     +D LI+
Sbjct: 11  QRNLRSMAAQAVEQVVEQGQSLSNILPPLQQKVSDKDKALLQELCFGVLRTLSQLDWLIN 70

Query: 89  SCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINA 148
             +    +  +    +  ++  G+ +L+    +P    ++E V  A           IN 
Sbjct: 71  KLMARPMTGKQ--RTVHYLIMVGLYQLLYTR-IPPHAALAETVEGAIAIKRPQLKGLING 127

Query: 149 VLDKVSRKEE 158
           VL +  R++E
Sbjct: 128 VLRQFQRRQE 137


>gi|240081718|ref|ZP_04726261.1| putative 16S RNA methyltransferase [Neisseria gonorrhoeae FA19]
 gi|268597816|ref|ZP_06131983.1| 16S RNA methyltransferase [Neisseria gonorrhoeae FA19]
 gi|268683121|ref|ZP_06149983.1| 16S RNA methyltransferase [Neisseria gonorrhoeae PID332]
 gi|268551604|gb|EEZ46623.1| 16S RNA methyltransferase [Neisseria gonorrhoeae FA19]
 gi|268623405|gb|EEZ55805.1| 16S RNA methyltransferase [Neisseria gonorrhoeae PID332]
 gi|317165348|gb|ADV08889.1| putative 16S RNA methyltransferase [Neisseria gonorrhoeae
           TCDC-NG08107]
          Length = 419

 Score = 46.2 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 24/119 (20%), Positives = 45/119 (37%), Gaps = 13/119 (10%)

Query: 41  ISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRL 100
           + +   +   A  +L  +      D+ +      G       +  +++  L +       
Sbjct: 23  LQDVLAHIRAAHPQLTAQENGALQDIAY------GCQRYLGSLKHMLAQMLKK--PID-- 72

Query: 101 DMILCSILRAGVLELIECHSVPVEVIISEYVC-IAHDFFYGDEPKFINAVLDKVSRKEE 158
           +  L S+L A + +L    + P  V+ +E V  IA     G    F NAVL +  R+ E
Sbjct: 73  NPQLESLLLAALYQLHYTRNAPHAVV-NEAVESIAKI-GRGQYRSFANAVLRRFLRERE 129


>gi|224493306|sp|Q0T014|RSMB_SHIF8 RecName: Full=Ribosomal RNA small subunit methyltransferase B;
           AltName: Full=16S rRNA m5C967 methyltransferase;
           AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
           rsmB
          Length = 429

 Score = 46.2 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 20/130 (15%), Positives = 49/130 (37%), Gaps = 3/130 (2%)

Query: 29  QIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLIS 88
           Q ++   +   +    E  +  ++    ++      D    + +  GV+     +D LI+
Sbjct: 4   QRNLRSMAAQAVEQVVEQGQSLSNILPPLQQKVSDKDKALLQELCFGVLRTLSQLDWLIN 63

Query: 89  SCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINA 148
             +    +  +    +  ++  G+ +L+    +P    ++E V  A           IN 
Sbjct: 64  KLMARPMTGKQ--RTVHYLIMVGLYQLLYTR-IPPHAALAETVEGAIAIKRPQLKGLING 120

Query: 149 VLDKVSRKEE 158
           VL +  R++E
Sbjct: 121 VLRQFQRRQE 130


>gi|171778151|ref|ZP_02919408.1| hypothetical protein STRINF_00244 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
 gi|171283133|gb|EDT48557.1| hypothetical protein STRINF_00244 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
          Length = 440

 Score = 46.2 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 27/143 (18%), Positives = 61/143 (42%), Gaps = 15/143 (10%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           +  AR  A+  L           E + E   Y   A  +   ++     D      I++G
Sbjct: 6   KKQARGLALVVL-----------ENVFEEGAYSNIALNQELKQTQLSQKDKSLVTEIVYG 54

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
            + RK  ++  ++  + ++    +LD  +  +L   + +L+    +P   ++++ V IA 
Sbjct: 55  TVARKITLEWYLAHYIEDR---DKLDPWVYYLLMLSLYQLLYLDKMPAHAVVNDAVNIAK 111

Query: 136 DFFYGDEP-KFINAVLDKVSRKE 157
           +        KF+NAVL ++++ +
Sbjct: 112 NRGNKKGAEKFVNAVLRRLTKDD 134


>gi|30064610|ref|NP_838781.1| 16S rRNA methyltransferase B [Shigella flexneri 2a str. 2457T]
 gi|56480310|ref|NP_709076.2| 16S rRNA methyltransferase B [Shigella flexneri 2a str. 301]
 gi|46396790|sp|Q7UBD3|RSMB_SHIFL RecName: Full=Ribosomal RNA small subunit methyltransferase B;
           AltName: Full=16S rRNA m5C967 methyltransferase;
           AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
           rsmB
 gi|30042869|gb|AAP18592.1| hypothetical protein S3545 [Shigella flexneri 2a str. 2457T]
 gi|56383861|gb|AAN44783.2| orf, conserved hypothetical protein [Shigella flexneri 2a str. 301]
 gi|313648789|gb|EFS13229.1| ribosomal RNA small subunit methyltransferase B [Shigella flexneri
           2a str. 2457T]
 gi|332749603|gb|EGJ80020.1| ribosomal RNA small subunit methyltransferase B [Shigella flexneri
           K-671]
 gi|332749746|gb|EGJ80161.1| ribosomal RNA small subunit methyltransferase B [Shigella flexneri
           4343-70]
 gi|332766528|gb|EGJ96735.1| ribosomal RNA small subunit methyltransferase B [Shigella flexneri
           2930-71]
 gi|332998314|gb|EGK17914.1| ribosomal RNA small subunit methyltransferase B [Shigella flexneri
           K-218]
 gi|333012367|gb|EGK31748.1| ribosomal RNA small subunit methyltransferase B [Shigella flexneri
           K-304]
          Length = 429

 Score = 46.2 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 20/130 (15%), Positives = 49/130 (37%), Gaps = 3/130 (2%)

Query: 29  QIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLIS 88
           Q ++   +   +    E  +  ++    ++      D    + +  GV+     +D LI+
Sbjct: 4   QRNLRSMAAQAVEQVVEQGQSLSNILPPLQQKVSDKDKALLQELCFGVLRTLSQLDWLIN 63

Query: 89  SCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINA 148
             +    +  +    +  ++  G+ +L+    +P    ++E V  A           IN 
Sbjct: 64  KLMARPMTGKQ--RTVHYLIMVGLYQLLYTR-IPPHAALAETVEGAIAIKRPQLKGLING 120

Query: 149 VLDKVSRKEE 158
           VL +  R++E
Sbjct: 121 VLRQFQRRQE 130


>gi|254494751|ref|ZP_05107922.1| 16S RNA methyltransferase [Neisseria gonorrhoeae 1291]
 gi|226513791|gb|EEH63136.1| 16S RNA methyltransferase [Neisseria gonorrhoeae 1291]
          Length = 419

 Score = 46.2 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 24/119 (20%), Positives = 45/119 (37%), Gaps = 13/119 (10%)

Query: 41  ISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRL 100
           + +   +   A  +L  +      D+ +      G       +  +++  L +       
Sbjct: 23  LQDVLAHIRAAHPQLTAQENGALQDIAY------GCQRYLGSLKHMLAQMLKK--PID-- 72

Query: 101 DMILCSILRAGVLELIECHSVPVEVIISEYVC-IAHDFFYGDEPKFINAVLDKVSRKEE 158
           +  L S+L A + +L    + P  V+ +E V  IA     G    F NAVL +  R+ E
Sbjct: 73  NPQLESLLLAALYQLHYTRNAPHAVV-NEAVESIAKI-GRGQYRSFANAVLRRFLRERE 129


>gi|332996759|gb|EGK16384.1| ribosomal RNA small subunit methyltransferase B [Shigella flexneri
           K-272]
          Length = 429

 Score = 46.2 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 20/130 (15%), Positives = 49/130 (37%), Gaps = 3/130 (2%)

Query: 29  QIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLIS 88
           Q ++   +   +    E  +  ++    ++      D    + +  GV+     +D LI+
Sbjct: 4   QRNLRSMAAHAVEQVVEQGQSLSNILPPLQQKVSDKDKALLQELCFGVLRTLSQLDWLIN 63

Query: 89  SCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINA 148
             +    +  +    +  ++  G+ +L+    +P    ++E V  A           IN 
Sbjct: 64  KLMARPMTGKQ--RTVHYLIMVGLYQLLYTR-IPPHAALAETVEGAIAIKRPQLKGLING 120

Query: 149 VLDKVSRKEE 158
           VL +  R++E
Sbjct: 121 VLRQFQRRQE 130


>gi|240124490|ref|ZP_04737446.1| putative 16S RNA methyltransferase [Neisseria gonorrhoeae PID332]
          Length = 417

 Score = 46.2 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 24/119 (20%), Positives = 45/119 (37%), Gaps = 13/119 (10%)

Query: 41  ISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRL 100
           + +   +   A  +L  +      D+ +      G       +  +++  L +       
Sbjct: 21  LQDVLAHIRAAHPQLTAQENGALQDIAY------GCQRYLGSLKHMLAQMLKK--PID-- 70

Query: 101 DMILCSILRAGVLELIECHSVPVEVIISEYVC-IAHDFFYGDEPKFINAVLDKVSRKEE 158
           +  L S+L A + +L    + P  V+ +E V  IA     G    F NAVL +  R+ E
Sbjct: 71  NPQLESLLLAALYQLHYTRNAPHAVV-NEAVESIAKI-GRGQYRSFANAVLRRFLRERE 127


>gi|239997893|ref|ZP_04717817.1| putative 16S RNA methyltransferase [Neisseria gonorrhoeae 35/02]
 gi|268593745|ref|ZP_06127912.1| 16S RNA methyltransferase [Neisseria gonorrhoeae 35/02]
 gi|268683215|ref|ZP_06150077.1| 16S RNA methyltransferase [Neisseria gonorrhoeae SK-92-679]
 gi|268547134|gb|EEZ42552.1| 16S RNA methyltransferase [Neisseria gonorrhoeae 35/02]
 gi|268623499|gb|EEZ55899.1| 16S RNA methyltransferase [Neisseria gonorrhoeae SK-92-679]
          Length = 419

 Score = 46.2 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 24/119 (20%), Positives = 45/119 (37%), Gaps = 13/119 (10%)

Query: 41  ISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRL 100
           + +   +   A  +L  +      D+ +      G       +  +++  L +       
Sbjct: 23  LQDVLAHIRAAHPQLTAQENGALQDIAY------GCQRYLGSLKHMLAQMLKK--PID-- 72

Query: 101 DMILCSILRAGVLELIECHSVPVEVIISEYVC-IAHDFFYGDEPKFINAVLDKVSRKEE 158
           +  L S+L A + +L    + P  V+ +E V  IA     G    F NAVL +  R+ E
Sbjct: 73  NPQLESLLLAALYQLHYTRNAPHAVV-NEAVESIAKI-GRGQYRSFANAVLRRFLRERE 129


>gi|194099888|ref|YP_002003025.1| putative 16S RNA methyltransferase [Neisseria gonorrhoeae
           NCCP11945]
 gi|240124641|ref|ZP_04737527.1| putative 16S RNA methyltransferase [Neisseria gonorrhoeae
           SK-92-679]
 gi|193935178|gb|ACF31002.1| putative 16S RNA methyltransferase [Neisseria gonorrhoeae
           NCCP11945]
          Length = 417

 Score = 46.2 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 24/119 (20%), Positives = 45/119 (37%), Gaps = 13/119 (10%)

Query: 41  ISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRL 100
           + +   +   A  +L  +      D+ +      G       +  +++  L +       
Sbjct: 21  LQDVLAHIRAAHPQLTAQENGALQDIAY------GCQRYLGSLKHMLAQMLKK--PID-- 70

Query: 101 DMILCSILRAGVLELIECHSVPVEVIISEYVC-IAHDFFYGDEPKFINAVLDKVSRKEE 158
           +  L S+L A + +L    + P  V+ +E V  IA     G    F NAVL +  R+ E
Sbjct: 71  NPQLESLLLAALYQLHYTRNAPHAVV-NEAVESIAKI-GRGQYRSFANAVLRRFLRERE 127


>gi|118591346|ref|ZP_01548744.1| SUN protein [Stappia aggregata IAM 12614]
 gi|118436018|gb|EAV42661.1| SUN protein [Stappia aggregata IAM 12614]
          Length = 458

 Score = 46.2 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 22/132 (16%), Positives = 44/132 (33%), Gaps = 16/132 (12%)

Query: 37  TTEIISEYETYRFCADTELDVESVY------LHVDLEWFRVIIHGVMDRKQHIDLLISSC 90
             +I+      +   D ELD  S +         D    R II   +  +  I  ++   
Sbjct: 31  AADILGNVVHKKRPLDGELDTASGHSGFRALAANDRSLVRAIIGAALRHRGEIAEILDRL 90

Query: 91  LTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPK----FI 146
           L       +   +   IL   + +++    +P    +S  V  A         +     +
Sbjct: 91  LDRPIP-EKTGRV-LDILHVAIAQMLF-LDIPDRAAVSLAVDHA---GLDRRARPYKGLV 144

Query: 147 NAVLDKVSRKEE 158
           N VL ++ R+ +
Sbjct: 145 NGVLRRLGRERD 156


>gi|150398383|ref|YP_001328850.1| Fmu (Sun) domain-containing protein [Sinorhizobium medicae WSM419]
 gi|150029898|gb|ABR62015.1| Fmu (Sun) domain protein [Sinorhizobium medicae WSM419]
          Length = 470

 Score = 46.2 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 26/134 (19%), Positives = 45/134 (33%), Gaps = 14/134 (10%)

Query: 35  CSTTEIISEYETYRFCADTELDVESVYL------HVDLEWFRVIIHGVMDRKQHIDLLIS 88
            +  +I++     +   D  LD E            D    R I++  +     I   I 
Sbjct: 41  QAAAKILAAVVDRKTPLDGMLDPERGNPVYRELNDADRALVRAILNSALRHLPRIRAAID 100

Query: 89  SCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKF--- 145
           S L            L  +L     +++    VP    +   V  A         +F   
Sbjct: 101 SLLQT--PLPEGARALEHVLTVAAAQILY-LDVPDHSAVDLAVEQAQ--SDPRNRRFASL 155

Query: 146 INAVLDKVSRKEEI 159
           +NAVL ++SR++E 
Sbjct: 156 VNAVLRRLSREKEA 169


>gi|257455153|ref|ZP_05620391.1| ribosomal RNA small subunit methyltransferase B [Enhydrobacter
           aerosaccus SK60]
 gi|257447486|gb|EEV22491.1| ribosomal RNA small subunit methyltransferase B [Enhydrobacter
           aerosaccus SK60]
          Length = 450

 Score = 46.2 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 19/108 (17%), Positives = 34/108 (31%), Gaps = 25/108 (23%)

Query: 59  SVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLD-------MILC---SIL 108
           +     D  +   ++ G               L + W+ +R+        +      + L
Sbjct: 36  NQVSEKDKGFAHELLLGT--------------LRQWWALARIGESLIEHEVTDKGVWAAL 81

Query: 109 RAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRK 156
             G+ +L+     P    I E V        G     INA+L KV + 
Sbjct: 82  NIGLYQLLYM-DTPDYAAIGETVEAVKQLDKGYGAGLINAILRKVQKN 128


>gi|313837734|gb|EFS75448.1| putative ribosomal RNA small subunit methyltransferase B
           [Propionibacterium acnes HL037PA2]
 gi|314927384|gb|EFS91215.1| putative ribosomal RNA small subunit methyltransferase B
           [Propionibacterium acnes HL044PA1]
 gi|314972672|gb|EFT16769.1| putative ribosomal RNA small subunit methyltransferase B
           [Propionibacterium acnes HL037PA3]
 gi|328907468|gb|EGG27234.1| tRNA/rRNA cytosine-C5-methylase [Propionibacterium sp. P08]
          Length = 458

 Score = 46.2 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 22/146 (15%), Positives = 46/146 (31%), Gaps = 17/146 (11%)

Query: 12  LSHRRGIA---RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEW 68
              +R  A   R  A  AL  ++  G      +++               +     D  +
Sbjct: 5   PHQKRRKADPARRLAYTALLAVETHGAYANLALADQLR-----------AAKMTGRDAAF 53

Query: 69  FRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIIS 128
              ++ G        D +I        +  +L   +  +LR    +++    VP    ++
Sbjct: 54  VTELVDGTSRGTGTWDRIIEVASRRNPT--KLQPGVRVMLRMAAHQILAMR-VPTRAAVA 110

Query: 129 EYVCIAHDFFYGDEPKFINAVLDKVS 154
             V +A           +NAV  ++S
Sbjct: 111 SSVDLAGQVIGERVTGLVNAVSRRIS 136


>gi|218282589|ref|ZP_03488827.1| hypothetical protein EUBIFOR_01409 [Eubacterium biforme DSM 3989]
 gi|218216460|gb|EEC89998.1| hypothetical protein EUBIFOR_01409 [Eubacterium biforme DSM 3989]
          Length = 397

 Score = 46.2 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 20/91 (21%), Positives = 33/91 (36%), Gaps = 6/91 (6%)

Query: 63  HVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVP 122
             D      I +G +   ++     S  +  K     L+  +  +L     +L+    VP
Sbjct: 32  EKDRALATRIFYGTIQNYRYCKACWSKYVKNK-----LNPKMDVLLTMSTYQLLFLDKVP 86

Query: 123 VEVIISEYVCIAHDFFYGDEPKFINAVLDKV 153
              I+++ V IA            NAVL KV
Sbjct: 87  SYAIVNDAVNIAKKI-NMKYAGLTNAVLHKV 116


>gi|332998302|gb|EGK17903.1| ribosomal RNA small subunit methyltransferase B [Shigella flexneri
           VA-6]
          Length = 420

 Score = 46.2 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 18/127 (14%), Positives = 50/127 (39%), Gaps = 6/127 (4%)

Query: 32  IIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCL 91
           +   +  +++ + ++    ++    ++      D    + +  GV+     +D LI+  +
Sbjct: 1   MAAQAVEQVVEQGQS---LSNILPPLQQKVSDKDKALLQELCFGVLRTLSQLDWLINKLM 57

Query: 92  TEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLD 151
               +  +    +  ++  G+ +L+    +P    ++E V  A           IN VL 
Sbjct: 58  ARPMTGKQ--RTVHYLIMVGLYQLLYTR-IPPHAALAETVEGAIAIKRPQLKGLINGVLR 114

Query: 152 KVSRKEE 158
           +  R++E
Sbjct: 115 QFQRRQE 121


>gi|308388330|gb|ADO30650.1| rsmB 16S RNA methyltransferase [Neisseria meningitidis alpha710]
          Length = 419

 Score = 46.2 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 25/126 (19%), Positives = 50/126 (39%), Gaps = 17/126 (13%)

Query: 34  GCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTE 93
           G +  +++++  T    A  +L  +      D+ +      G       +  +++  L +
Sbjct: 20  GRNLQDVLAQIRT----AHPDLMAQENGALQDIAY------GCQRYLGSLKHMLAQMLKK 69

Query: 94  KWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVC-IAHDFFYGDEPKFINAVLDK 152
                  +  L S+L A + +L    + P  V+ +E V  IA     G    F NAVL +
Sbjct: 70  --PID--NPQLESLLLAALYQLHYTRNAPHAVV-NEAVESIAKI-GRGQYRSFANAVLRR 123

Query: 153 VSRKEE 158
             R+ +
Sbjct: 124 FLRERD 129


>gi|332754010|gb|EGJ84383.1| ribosomal RNA small subunit methyltransferase B [Shigella flexneri
           2747-71]
          Length = 420

 Score = 46.2 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 18/127 (14%), Positives = 50/127 (39%), Gaps = 6/127 (4%)

Query: 32  IIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCL 91
           +   +  +++ + ++    ++    ++      D    + +  GV+     +D LI+  +
Sbjct: 1   MAAQAVEQVVEQGQS---LSNILPPLQQKVSDKDKALLQELCFGVLRTLSQLDWLINKLM 57

Query: 92  TEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLD 151
               +  +    +  ++  G+ +L+    +P    ++E V  A           IN VL 
Sbjct: 58  ARPMTGKQ--RTVHYLIMVGLYQLLYTR-IPPHAALAETVEGAIAIKRPQLKGLINGVLR 114

Query: 152 KVSRKEE 158
           +  R++E
Sbjct: 115 QFQRRQE 121


>gi|325498857|gb|EGC96716.1| 16S rRNA methyltransferase B [Escherichia fergusonii ECD227]
          Length = 429

 Score = 46.2 bits (109), Expect = 0.002,   Method: Composition-based stats.
 Identities = 20/130 (15%), Positives = 49/130 (37%), Gaps = 3/130 (2%)

Query: 29  QIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLIS 88
           Q ++   +   +    E  +  ++    ++      D    + +  GV+     +D LI+
Sbjct: 4   QRNLRSMAAQAVEQVVEQGQSLSNILPPLQQKVSDKDKALLQELCFGVLRTLSQLDWLIN 63

Query: 89  SCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINA 148
             +    +  +    +  ++  G+ +L+    +P    ++E V  A           IN 
Sbjct: 64  KLMARPMTGKQ--RTVHYLIMVGLYQLLYTR-IPPHAALAETVEGAVAIKRPQLKGLING 120

Query: 149 VLDKVSRKEE 158
           VL +  R++E
Sbjct: 121 VLRQFHRQQE 130


>gi|49476251|ref|YP_034292.1| SUN protein (Fmu protein) [Bartonella henselae str. Houston-1]
 gi|49239059|emb|CAF28362.1| SUN protein (FMU protein) [Bartonella henselae str. Houston-1]
          Length = 447

 Score = 46.2 bits (109), Expect = 0.002,   Method: Composition-based stats.
 Identities = 20/111 (18%), Positives = 34/111 (30%), Gaps = 14/111 (12%)

Query: 62  LHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSV 121
              D    R I+   +  +  I   +   L        L   L  +L     +++    +
Sbjct: 46  SQRDRLLCRAILAAALRHRGQITDALRRFLKRPLPSQALS--LQHLLHISAAQILY-LDI 102

Query: 122 PVEVIISEYVCIAH------DFFYGDEPKFINAVLDKVSRKEEIKRSGCVS 166
           P    I   V +A        F  G     +NA+L  V+R+    R     
Sbjct: 103 PDHAAIDLAVRVAKLDPRMCRFSGG-----VNALLRNVAREAVFLRQKAPH 148


>gi|320655927|gb|EFX23847.1| 16S rRNA methyltransferase B [Escherichia coli O55:H7 str. 3256-97
           TW 07815]
          Length = 429

 Score = 46.2 bits (109), Expect = 0.002,   Method: Composition-based stats.
 Identities = 27/147 (18%), Positives = 56/147 (38%), Gaps = 17/147 (11%)

Query: 12  LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71
           +  +R + R  A QA+ Q+   G S + I+               ++      D    + 
Sbjct: 1   MKKQRNL-RSMAAQAVEQVVEQGQSLSNIL-------------PPLQQKVSDKDKALLQE 46

Query: 72  IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
           +  GV+     +D LI+  +    +  +    +  ++  G+ +L+    +P    ++E V
Sbjct: 47  LCFGVLRTLSQLDWLINKSMARPMTGKQ--RTVHYLIIVGLYQLLYTR-IPPHAALAETV 103

Query: 132 CIAHDFFYGDEPKFINAVLDKVSRKEE 158
             A           IN VL +  R++E
Sbjct: 104 EGAIAIKRPQLKGLINGVLRQFQRQQE 130


>gi|331649085|ref|ZP_08350171.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
           M605]
 gi|330909333|gb|EGH37847.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
           AA86]
 gi|331041583|gb|EGI13727.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
           M605]
          Length = 429

 Score = 46.2 bits (109), Expect = 0.002,   Method: Composition-based stats.
 Identities = 26/147 (17%), Positives = 56/147 (38%), Gaps = 17/147 (11%)

Query: 12  LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71
           +  +R + R  A QA+ Q+   G S + I+               ++      D    + 
Sbjct: 1   MKKQRNL-RSMAAQAVEQVVEQGQSLSNIL-------------PPLQQKVSDKDKALLQE 46

Query: 72  IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
           +  GV+     +D LI+  +    +  +    +  ++  G+ +L+    +P    ++E V
Sbjct: 47  LCFGVLRTLSQLDWLINKLMARPMTGKQ--RTVHYLIMVGLYQLLYTR-IPPHAALAETV 103

Query: 132 CIAHDFFYGDEPKFINAVLDKVSRKEE 158
             A           IN VL +  R+++
Sbjct: 104 EGAVAIKRPQLKGLINGVLRQFQRQQD 130


>gi|218702051|ref|YP_002409680.1| 16S rRNA methyltransferase B [Escherichia coli IAI39]
 gi|300935286|ref|ZP_07150297.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
           MS 21-1]
 gi|254766856|sp|B7NLK8|RSMB_ECO7I RecName: Full=Ribosomal RNA small subunit methyltransferase B;
           AltName: Full=16S rRNA m5C967 methyltransferase;
           AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
           rsmB
 gi|218372037|emb|CAR19897.1| 16S rRNA m5C967 methyltransferase,
           S-adenosyl-L-methionine-dependent [Escherichia coli
           IAI39]
 gi|300459489|gb|EFK22982.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
           MS 21-1]
          Length = 429

 Score = 46.2 bits (109), Expect = 0.002,   Method: Composition-based stats.
 Identities = 26/147 (17%), Positives = 56/147 (38%), Gaps = 17/147 (11%)

Query: 12  LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71
           +  +R + R  A QA+ Q+   G S + I+               ++      D    + 
Sbjct: 1   MKKQRNL-RSMAAQAVEQVVEQGQSLSNIL-------------PPLQQKVSDKDKALLQE 46

Query: 72  IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
           +  GV+     +D LI+  +    +  +    +  ++  G+ +L+    +P    ++E V
Sbjct: 47  LCFGVLRTLSQLDWLINKLMARPMTGKQ--RTVHYLIMVGLYQLLYTR-IPPHAALAETV 103

Query: 132 CIAHDFFYGDEPKFINAVLDKVSRKEE 158
             A           IN VL +  R+++
Sbjct: 104 EGAVAIKRPQLKGLINGVLRQFQRQQD 130


>gi|110635746|ref|YP_675954.1| Fmu (Sun) [Mesorhizobium sp. BNC1]
 gi|110286730|gb|ABG64789.1| Fmu (Sun) [Chelativorans sp. BNC1]
          Length = 460

 Score = 46.2 bits (109), Expect = 0.002,   Method: Composition-based stats.
 Identities = 28/149 (18%), Positives = 46/149 (30%), Gaps = 25/149 (16%)

Query: 14  HRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYL--HVDLEWFRV 71
            RR  A+L A                +I          D E            D    R 
Sbjct: 31  ARRTAAKLLA---------------AVIDARTPLDALTDNEHGHPQYLSLEQRDRALVRA 75

Query: 72  IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
           I+   +  +  I+ L+   L      +     L  IL  G  +++    VP    +   V
Sbjct: 76  ILISALRHRCTIEKLVGRRLDRPLPPN--AHSLSHILHVGAAQILF-LDVPDSAAVDLAV 132

Query: 132 CIAHDFFYGDEPKF---INAVLDKVSRKE 157
             A         +F   +NAVL  ++R++
Sbjct: 133 TQAKA--DPRAARFSGLVNAVLRNLARRK 159


>gi|121633990|ref|YP_974235.1| SUN-family protein [Neisseria meningitidis FAM18]
 gi|120865696|emb|CAM09423.1| SUN-family protein [Neisseria meningitidis FAM18]
 gi|254671147|emb|CBA08200.1| Sun protein [Neisseria meningitidis alpha153]
 gi|325133179|gb|EGC55850.1| ribosomal RNA small subunit methyltransferase B [Neisseria
           meningitidis M6190]
 gi|325138791|gb|EGC61343.1| ribosomal RNA small subunit methyltransferase B [Neisseria
           meningitidis ES14902]
 gi|325143273|gb|EGC65611.1| ribosomal RNA small subunit methyltransferase B [Neisseria
           meningitidis 961-5945]
 gi|325197401|gb|ADY92857.1| ribosomal RNA small subunit methyltransferase B [Neisseria
           meningitidis G2136]
          Length = 419

 Score = 46.2 bits (109), Expect = 0.002,   Method: Composition-based stats.
 Identities = 24/126 (19%), Positives = 50/126 (39%), Gaps = 17/126 (13%)

Query: 34  GCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTE 93
           G +  +++++  T    A  +L  +      D+ +      G       +  +++  L +
Sbjct: 20  GRNLQDVLAQIRT----AHPDLTAQENGALQDIAY------GCQRYLGSLKHMLAQMLKK 69

Query: 94  KWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVC-IAHDFFYGDEPKFINAVLDK 152
                  +  L S+L A + +L    + P  V+ +E V  IA     G    F NA+L +
Sbjct: 70  --PID--NPQLESLLLAALYQLHYTRNAPHAVV-NEAVESIAKI-GRGQYRSFANAILRR 123

Query: 153 VSRKEE 158
             R+ +
Sbjct: 124 FLRERD 129


>gi|227484654|ref|ZP_03914970.1| possible rRNA SAM-dependent methyltransferase RmsB [Anaerococcus
           lactolyticus ATCC 51172]
 gi|227237374|gb|EEI87389.1| possible rRNA SAM-dependent methyltransferase RmsB [Anaerococcus
           lactolyticus ATCC 51172]
          Length = 428

 Score = 46.2 bits (109), Expect = 0.002,   Method: Composition-based stats.
 Identities = 17/93 (18%), Positives = 35/93 (37%), Gaps = 4/93 (4%)

Query: 66  LEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEV 125
           L      ++GV++ K +ID +I           ++   +  IL  G+  +          
Sbjct: 35  LSLITKTVYGVLENKIYIDYMIRKLSDV--RLKKIHKHVLLILEIGIYNI-HFLETKDYA 91

Query: 126 IISEYVCIAHDFFYGDEPKFINAVLDKVSRKEE 158
            + + V +  +        F+NA+L    R E+
Sbjct: 92  TVDKLVDLTKE-KNKRSTGFVNAILRSFIRDEK 123


>gi|15828640|ref|NP_326000.1| hypothetical protein MYPU_1690 [Mycoplasma pulmonis UAB CTIP]
 gi|14089582|emb|CAC13342.1| unknown; predicted coding region [Mycoplasma pulmonis]
          Length = 160

 Score = 46.2 bits (109), Expect = 0.002,   Method: Composition-based stats.
 Identities = 25/118 (21%), Positives = 52/118 (44%), Gaps = 18/118 (15%)

Query: 48  RFCADTELDVESVYLHVDLEWFR-VIIHGVMDRKQHIDLLISSCLTEK---WSFSRLDMI 103
            + +++ LD+   +++         ++  ++  K   + LIS  L      W   ++  +
Sbjct: 34  WYLSESNLDINDDFVNQAFSLEENKVLKLILKNKTKFENLISKFLKSNSLKW--EQILPL 91

Query: 104 LCSILRAGVLELIEC-----HSVPVEVIISEYVCIAHDF-FYGDEPKFINAVLDKVSR 155
           + +I+      L          +   V+ISE + I+ D  +   E  FINA+LDK+S+
Sbjct: 92  IKAII------LFFSVQISLQDLDGPVLISEALEISKDLIYEKKEVAFINAILDKISK 143


>gi|39933110|ref|NP_945386.1| Sun/ nucleolar Nop1/Nop2 [Rhodopseudomonas palustris CGA009]
 gi|39652735|emb|CAE25474.1| Bacterial Sun/eukaryotic nucleolar Nop1/Nop2 [Rhodopseudomonas
           palustris CGA009]
          Length = 450

 Score = 45.9 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 21/131 (16%), Positives = 46/131 (35%), Gaps = 14/131 (10%)

Query: 37  TTEIISEYETYRFCADTELDVESVYL------HVDLEWFRVIIHGVMDRKQHIDLLISSC 90
             +I+      R   D +L+  + +         D    R ++  ++ R   ++ L++  
Sbjct: 21  AADILDGVLQKRRMLDDQLEGPAAHPGLKTLSDRDRALMRRLVATILRRLGTLEGLLAKL 80

Query: 91  LTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKF---IN 147
           L              S L  G  +++    VP    +   V +          K+   +N
Sbjct: 81  LDRGVPTD--APRAKSALLIGAAQILWM-DVPDHAAVDLSVRLVQ--SDRRAAKYAGLVN 135

Query: 148 AVLDKVSRKEE 158
           AVL + +R+ +
Sbjct: 136 AVLRRCAREGQ 146


>gi|148240114|ref|YP_001225501.1| ribosomal RNA small subunit methyltransferase B [Synechococcus sp.
           WH 7803]
 gi|147848653|emb|CAK24204.1| Ribosomal RNA small subunit methyltransferase B [Synechococcus sp.
           WH 7803]
          Length = 447

 Score = 45.9 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 24/176 (13%), Positives = 50/176 (28%), Gaps = 35/176 (19%)

Query: 1   MTIQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESV 60
           M+   ++ +      R +A                   E ++    Y   A      +  
Sbjct: 1   MSESPSRSETPGLASRRVA---------------LEVLEAVAA-GAYADVALERALRQHP 44

Query: 61  YLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMI--------LCSILRAGV 112
               D      + +G +  +Q +D          W   +L  +        L  +L  G+
Sbjct: 45  LQAADRGLATELAYGAIRWRQWLDA---------W-LDKLGKVPARKQPPRLRWLLHLGL 94

Query: 113 LELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRSGCVSAI 168
            +++    +P    ++  V +A           +N +L    R  E    G V   
Sbjct: 95  YQVLRMERIPAAAAVNTTVELAKRGKLARLAPVVNGLLRAALRAREAG-DGLVQPT 149


>gi|57642239|ref|YP_184717.1| tRNA/rRNA cytosine-C5-methylase NOL1/NOP2/Sun family protein
           [Thermococcus kodakarensis KOD1]
 gi|57160563|dbj|BAD86493.1| tRNA/rRNA cytosine-C5-methylase, NOL1/NOP2/Sun family, fused to
           N-terminal NusB regulator domain [Thermococcus
           kodakarensis KOD1]
          Length = 450

 Score = 45.9 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 20/88 (22%), Positives = 38/88 (43%), Gaps = 2/88 (2%)

Query: 68  WFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVII 127
                +  +   +  ID +I+S L +      LD  L ++LR G  E+     VP  +  
Sbjct: 49  LAHAYVFEIEKWRAKIDFIINSVL-KGSKVEDLDPYLANLLRIGTFEIHFRK-VPPALAT 106

Query: 128 SEYVCIAHDFFYGDEPKFINAVLDKVSR 155
              V +  + F     KF+NA++ ++ +
Sbjct: 107 DSIVRVVKEKFDFSRAKFVNALMHEIEK 134


>gi|316931426|ref|YP_004106408.1| Fmu (Sun) domain-containing protein [Rhodopseudomonas palustris
           DX-1]
 gi|315599140|gb|ADU41675.1| Fmu (Sun) domain protein [Rhodopseudomonas palustris DX-1]
          Length = 450

 Score = 45.9 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 21/131 (16%), Positives = 46/131 (35%), Gaps = 14/131 (10%)

Query: 37  TTEIISEYETYRFCADTELDVESVYL------HVDLEWFRVIIHGVMDRKQHIDLLISSC 90
             +I+      R   D +L+  + +         D    R ++  ++ R   ++ L++  
Sbjct: 21  AADILDGVLQKRRMLDDQLEGPAAHPGLKTLSDRDRALMRRLVATILRRLGTLEGLLARL 80

Query: 91  LTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKF---IN 147
           L              S L  G  +++    VP    +   V +          K+   +N
Sbjct: 81  LDRGVPTD--APRAKSALLIGAAQILWM-DVPDHAAVDLSVRLVQ--SDRRAAKYAGLVN 135

Query: 148 AVLDKVSRKEE 158
           AVL + +R+ +
Sbjct: 136 AVLRRCAREGQ 146


>gi|146329596|ref|YP_001209088.1| rRNA SAM-dependent methyltransferase, Fmu [Dichelobacter nodosus
           VCS1703A]
 gi|146233066|gb|ABQ14044.1| rRNA SAM-dependent methyltransferase, Fmu [Dichelobacter nodosus
           VCS1703A]
          Length = 418

 Score = 45.9 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 25/139 (17%), Positives = 53/139 (38%), Gaps = 17/139 (12%)

Query: 18  IARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVM 77
            AR AA + L+ +     S  +++  ++             +    +D   ++ +++G +
Sbjct: 2   KAREAAARTLFAVIEQRQSLNQLLPAFK-------------NQLPDIDRALYQELVYGTL 48

Query: 78  DRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDF 137
              + +  L +  L +    + L  I   IL  G+ +L+        V+  E V +    
Sbjct: 49  REYRSLSFLHNRLLHQPLDKNPLPAI---ILNLGIYQLLRLTLGDHGVV-HETVELCKKL 104

Query: 138 FYGDEPKFINAVLDKVSRK 156
                    NAVL +V R+
Sbjct: 105 RCPAVSGLTNAVLRRVQRE 123


>gi|269120809|ref|YP_003308986.1| Fmu (Sun) domain protein [Sebaldella termitidis ATCC 33386]
 gi|268614687|gb|ACZ09055.1| Fmu (Sun) domain protein [Sebaldella termitidis ATCC 33386]
          Length = 437

 Score = 45.9 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 21/102 (20%), Positives = 36/102 (35%), Gaps = 10/102 (9%)

Query: 59  SVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLT--EKWSFSRLDMILCSILRAGVLELI 116
             Y   +  +   IIH  +     ID LI    +  +K    +L       LR  V + +
Sbjct: 33  KGYNKKEKSFITNIIHTTLKNLIFIDYLIEKNASNIKKRKIKQL-------LRISVAQFL 85

Query: 117 ECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEE 158
                    I+ E V  A       +  F+N +L  + +K +
Sbjct: 86  LNKESDYSGIVFEAVETAKII-NKHQTGFVNVILRNIFQKYD 126


>gi|294786452|ref|ZP_06751706.1| Sun protein [Parascardovia denticolens F0305]
 gi|315226022|ref|ZP_07867810.1| ribosomal RNA small subunit methyltransferase B [Parascardovia
           denticolens DSM 10105]
 gi|294485285|gb|EFG32919.1| Sun protein [Parascardovia denticolens F0305]
 gi|315120154|gb|EFT83286.1| ribosomal RNA small subunit methyltransferase B [Parascardovia
           denticolens DSM 10105]
          Length = 540

 Score = 45.9 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 20/92 (21%), Positives = 40/92 (43%), Gaps = 5/92 (5%)

Query: 65  DLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVE 124
           D      +++G +  +  +D +I+          R+++ +    R GV +L+   S P  
Sbjct: 59  DRAAVTDMVYGTLRWQGFLDAVIADVSFR--PLKRIEIPVLDAARLGVYQLLFLGS-PDY 115

Query: 125 VIISEYVCIAHDFFYGDE--PKFINAVLDKVS 154
             +S+ V +       D     F+NA+L KV+
Sbjct: 116 AAVSQTVGLLRRGGRSDARAAGFVNALLRKVA 147


>gi|88801025|ref|ZP_01116574.1| hypothetical protein MED297_05044 [Reinekea sp. MED297]
 gi|88776228|gb|EAR07454.1| hypothetical protein MED297_05044 [Reinekea sp. MED297]
          Length = 427

 Score = 45.9 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 25/126 (19%), Positives = 45/126 (35%), Gaps = 10/126 (7%)

Query: 37  TTEIISEYETYRFCADTELDVESVYLHVDL-EWFRVIIHGVMDRKQHIDLLISSCLTEKW 95
             EI+ +        + EL     ++  D   + + +++G       +D LI   L  + 
Sbjct: 8   AAEILLQVVDEGRSLNDELPRRLKHIDPDQQAFLQQLVYGSTRYYFALDELI--NLLVEK 65

Query: 96  SF---SRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDK 152
                 RL  +L +I   G+ +L     V     I+E V              +NA L +
Sbjct: 66  PIRGKERLVHMLLAI---GLYQL-WHLDVAEHAAINETVEATLTAKKQWAKNLVNASLRR 121

Query: 153 VSRKEE 158
             R+ E
Sbjct: 122 FQRERE 127


>gi|303240317|ref|ZP_07326836.1| Fmu (Sun) domain protein [Acetivibrio cellulolyticus CD2]
 gi|302592227|gb|EFL61956.1| Fmu (Sun) domain protein [Acetivibrio cellulolyticus CD2]
          Length = 471

 Score = 45.9 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 31/164 (18%), Positives = 52/164 (31%), Gaps = 34/164 (20%)

Query: 10  LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF 69
           +  S +    R  A++ L   DI    +    S      +     LD+       D  + 
Sbjct: 1   MGTSKKELRIREIALEIL--NDITENGSN---SNLVLSNYFNKYTLDIN------DEIFI 49

Query: 70  RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSV-------- 121
             ++ G +  K  I   I      K    ++   + +ILR GV E      +        
Sbjct: 50  TSLVLGTLRLKVSIQYAIE---VPKKIAKKISPCIMNILRLGVYEHFYGDVIPNPDESFT 106

Query: 122 ------PVEV------IISEYVCIAHDFFYGDEPKFINAVLDKV 153
                 P  +       I+EYV IA           + AVL ++
Sbjct: 107 SYTGNEPYRIEKPKCKYINEYVRIAEKCGQRSGALVVEAVLSRL 150


>gi|261364702|ref|ZP_05977585.1| ribosomal RNA small subunit methyltransferase B [Neisseria mucosa
           ATCC 25996]
 gi|288566995|gb|EFC88555.1| ribosomal RNA small subunit methyltransferase B [Neisseria mucosa
           ATCC 25996]
          Length = 419

 Score = 45.9 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 24/126 (19%), Positives = 49/126 (38%), Gaps = 17/126 (13%)

Query: 34  GCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTE 93
           G +  +++++       A  EL  +      D+ +      G       +  +++  L +
Sbjct: 20  GRNLQDVLAQIRA----AHPELTAQENGALQDIAY------GCQRYLGSLKHMLAQMLKK 69

Query: 94  KWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVC-IAHDFFYGDEPKFINAVLDK 152
                  +  L S+L A + +L    + P  V+ +E V  IA     G    F NA+L +
Sbjct: 70  --PID--NPQLESLLLAAMYQLHYTRNAPHAVV-NEAVESIAKI-GRGQFRSFANAILRR 123

Query: 153 VSRKEE 158
             R+ +
Sbjct: 124 FLRERQ 129


>gi|71278391|ref|YP_266800.1| sun protein [Colwellia psychrerythraea 34H]
 gi|71144131|gb|AAZ24604.1| sun protein [Colwellia psychrerythraea 34H]
          Length = 440

 Score = 45.9 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 20/115 (17%), Positives = 39/115 (33%), Gaps = 3/115 (2%)

Query: 48  RFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSI 107
           R  +D     +   +  D    + I +GV+     ++  +S  + +         +   +
Sbjct: 21  RSLSDELPKQQDKLIGKDKGLLQEICYGVLRYLPELENDVSQLVQK--PIKGKQRVFHFL 78

Query: 108 LRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRS 162
           L  GV ++     +P    +SE V              +NAVL    R  E +  
Sbjct: 79  LLVGVYQIRYMR-IPDHAAVSETVAATKTLKNDHMKGLVNAVLRGFLRALEAENK 132


>gi|320666401|gb|EFX33384.1| 16S rRNA methyltransferase B [Escherichia coli O157:H7 str. LSU-61]
          Length = 429

 Score = 45.9 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 20/130 (15%), Positives = 49/130 (37%), Gaps = 3/130 (2%)

Query: 29  QIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLIS 88
           Q ++   +   +    E  +  ++    ++      D    + +  GV+     +D LI+
Sbjct: 4   QRNLRSMAAQVVEQVVEQGQSLSNILPPLQQKVSDKDKALLQELCFGVLRTLSQLDWLIN 63

Query: 89  SCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINA 148
             +    +  +    +  ++  G+ +L+    +P    ++E V  A           IN 
Sbjct: 64  KSMARPMTGKQ--RTVHYLIMVGLYQLLYTR-IPPHAALAETVEGAIAIKRPQLKGLING 120

Query: 149 VLDKVSRKEE 158
           VL +  R++E
Sbjct: 121 VLRQFQRQQE 130


>gi|192288464|ref|YP_001989069.1| Fmu (Sun) domain protein [Rhodopseudomonas palustris TIE-1]
 gi|192282213|gb|ACE98593.1| Fmu (Sun) domain protein [Rhodopseudomonas palustris TIE-1]
          Length = 450

 Score = 45.9 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 21/131 (16%), Positives = 46/131 (35%), Gaps = 14/131 (10%)

Query: 37  TTEIISEYETYRFCADTELDVESVYL------HVDLEWFRVIIHGVMDRKQHIDLLISSC 90
             +I+      R   D +L+  + +         D    R ++  ++ R   ++ L++  
Sbjct: 21  AADILDGVLQKRRMLDDQLEGPAAHPGLKTLSDRDRALMRRLVATILRRLGTLEGLLAKL 80

Query: 91  LTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKF---IN 147
           L              S L  G  +++    VP    +   V +          K+   +N
Sbjct: 81  LDRGVPTD--APRAKSALLIGAAQILWM-DVPDHAAVDLSVRLVQ--SDRRAAKYAGLVN 135

Query: 148 AVLDKVSRKEE 158
           AVL + +R+ +
Sbjct: 136 AVLRRCAREGQ 146


>gi|257066168|ref|YP_003152424.1| Fmu (Sun) domain-containing protein [Anaerococcus prevotii DSM
           20548]
 gi|256798048|gb|ACV28703.1| Fmu (Sun) domain protein [Anaerococcus prevotii DSM 20548]
          Length = 430

 Score = 45.9 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 26/123 (21%), Positives = 48/123 (39%), Gaps = 7/123 (5%)

Query: 39  EIISEYETYRFCADTELDVESVYLH---VDLEWFRVIIHGVMDRKQHIDLLISSCLTEKW 95
           E+I        C D + + E  YL     +L +   +I+GV++ K +ID +I      K 
Sbjct: 5   ELILNSLVRIICEDKKSNEEINYLEKRVGNLPYATKVIYGVLENKIYIDYMIGKLSKIKL 64

Query: 96  SFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSR 155
                ++   +IL  G+  +           + + V +           F+NA+L    R
Sbjct: 65  KKIHKNV--LTILEIGIYNI-HFLETKDYATVDKLVELTKR-KNRRSSGFVNAILRNFIR 120

Query: 156 KEE 158
            E+
Sbjct: 121 DEK 123


>gi|206896332|ref|YP_002247123.1| hypothetical protein COPRO5265_0776 [Coprothermobacter
           proteolyticus DSM 5265]
 gi|206738949|gb|ACI18027.1| hypothetical protein COPRO5265_0776 [Coprothermobacter
           proteolyticus DSM 5265]
          Length = 148

 Score = 45.9 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 28/153 (18%), Positives = 57/153 (37%), Gaps = 17/153 (11%)

Query: 12  LSHRRGI----ARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLE 67
           +S  RG      R   +Q L   ++   S  ++              L V          
Sbjct: 1   MSKSRGKLFETGRELLLQELLGYELGLTSQEDL-----------WPRLKVALPKSDRVKR 49

Query: 68  WFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVP-VEVI 126
             + +++  ++ ++ ID+ I   L  K SF+    +   I+R  V+E         + +I
Sbjct: 50  HIKRLLNAYLENREEIDIWIDHSLKSK-SFAAYSDLEKMIMRLAVVETRFFGDEKMMPII 108

Query: 127 ISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEI 159
           +S +V IA  +      K I+A++     ++  
Sbjct: 109 VSTWVDIARRYVDESFAKAIHAIMGTCYEEQNA 141


>gi|260439509|ref|ZP_05793325.1| putative 16S RNA methyltransferase [Neisseria gonorrhoeae DGI2]
 gi|268602401|ref|ZP_06136568.1| 16S RNA methyltransferase [Neisseria gonorrhoeae PID18]
 gi|268604663|ref|ZP_06138830.1| 16S RNA methyltransferase [Neisseria gonorrhoeae PID1]
 gi|291042746|ref|ZP_06568487.1| 16S RNA methyltransferase [Neisseria gonorrhoeae DGI2]
 gi|268586532|gb|EEZ51208.1| 16S RNA methyltransferase [Neisseria gonorrhoeae PID18]
 gi|268588794|gb|EEZ53470.1| 16S RNA methyltransferase [Neisseria gonorrhoeae PID1]
 gi|291013180|gb|EFE05146.1| 16S RNA methyltransferase [Neisseria gonorrhoeae DGI2]
          Length = 419

 Score = 45.9 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 23/119 (19%), Positives = 45/119 (37%), Gaps = 13/119 (10%)

Query: 41  ISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRL 100
           + +   +   A  +L  +      D+ +      G       +  +++  L +       
Sbjct: 23  LQDVLAHIRAAHPQLTAQENGALQDIAY------GCQRYLGSLKHMLAQMLKK--PID-- 72

Query: 101 DMILCSILRAGVLELIECHSVPVEVIISEYVC-IAHDFFYGDEPKFINAVLDKVSRKEE 158
           +  L S+L A + +L    + P  V+ +E V  IA     G    F NAVL +  R+ +
Sbjct: 73  NPQLESLLLAALYQLHYTRNAPHAVV-NEAVESIAKI-GRGQYRSFANAVLRRFLRERD 129


>gi|240116730|ref|ZP_04730792.1| putative 16S RNA methyltransferase [Neisseria gonorrhoeae PID18]
 gi|240118952|ref|ZP_04733014.1| putative 16S RNA methyltransferase [Neisseria gonorrhoeae PID1]
          Length = 417

 Score = 45.9 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 23/119 (19%), Positives = 45/119 (37%), Gaps = 13/119 (10%)

Query: 41  ISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRL 100
           + +   +   A  +L  +      D+ +      G       +  +++  L +       
Sbjct: 21  LQDVLAHIRAAHPQLTAQENGALQDIAY------GCQRYLGSLKHMLAQMLKK--PID-- 70

Query: 101 DMILCSILRAGVLELIECHSVPVEVIISEYVC-IAHDFFYGDEPKFINAVLDKVSRKEE 158
           +  L S+L A + +L    + P  V+ +E V  IA     G    F NAVL +  R+ +
Sbjct: 71  NPQLESLLLAALYQLHYTRNAPHAVV-NEAVESIAKI-GRGQYRSFANAVLRRFLRERD 127


>gi|261380548|ref|ZP_05985121.1| ribosomal RNA small subunit methyltransferase B [Neisseria subflava
           NJ9703]
 gi|284796516|gb|EFC51863.1| ribosomal RNA small subunit methyltransferase B [Neisseria subflava
           NJ9703]
          Length = 419

 Score = 45.5 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 25/126 (19%), Positives = 49/126 (38%), Gaps = 17/126 (13%)

Query: 34  GCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTE 93
           GC+  ++++E       A  +L  +      D+ +      G       +  ++   L +
Sbjct: 20  GCNLQDVLAEIRA----AHPQLTAQENGALQDIAY------GCQRYLGSLKYMLGQMLKK 69

Query: 94  KWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVC-IAHDFFYGDEPKFINAVLDK 152
                  +  L S+L A + +L    + P  V+ +E V  IA     G    F NA+L +
Sbjct: 70  --PID--NPQLESLLLAAMYQLHYTRNAPHAVV-NEAVESIAKI-GRGQFRSFANAILRR 123

Query: 153 VSRKEE 158
             R+ +
Sbjct: 124 FLRERD 129


>gi|262273082|ref|ZP_06050899.1| ribosomal RNA small subunit methyltransferase B [Grimontia hollisae
           CIP 101886]
 gi|262222838|gb|EEY74146.1| ribosomal RNA small subunit methyltransferase B [Grimontia hollisae
           CIP 101886]
          Length = 426

 Score = 45.5 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 24/147 (16%), Positives = 49/147 (33%), Gaps = 16/147 (10%)

Query: 20  RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79
           R  A Q +YQ+   G S +  +                +      D    + I +GV+  
Sbjct: 4   RAVAAQVIYQVVDQGQSLSAAL-------------PPAQQKVAPRDGALLQEICYGVLRW 50

Query: 80  KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139
              ++ +  S + +         +   ++  G+ +L     +P    ++E V        
Sbjct: 51  LPRLESITQSLMDK--PLKGKQRVFHHLILVGLYQLSYMR-IPAHAAVAETVNATKVLKK 107

Query: 140 GDEPKFINAVLDKVSRKEEIKRSGCVS 166
                 +NAVL    R +E   +  V+
Sbjct: 108 PQLRGLVNAVLRSYQRNQETLDAASVA 134


>gi|254700459|ref|ZP_05162287.1| Sun [Brucella suis bv. 5 str. 513]
 gi|261750960|ref|ZP_05994669.1| fmu domain-containing protein [Brucella suis bv. 5 str. 513]
 gi|261740713|gb|EEY28639.1| fmu domain-containing protein [Brucella suis bv. 5 str. 513]
          Length = 465

 Score = 45.5 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 28/162 (17%), Positives = 55/162 (33%), Gaps = 23/162 (14%)

Query: 2   TIQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVY 61
           T  ++  DL+       ARL A + L            +I +  +     D         
Sbjct: 17  TNSNSAADLRPGL---AARLCAARLL----------GAVIEKNTSLDGLTDNAHGHPQYL 63

Query: 62  L--HVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECH 119
                D    R I+   +  +  I+  I+  L          + L  +L   V ++    
Sbjct: 64  ALEPRDRALVRAILGSALRNRGSIERAINKRLDR--PLPENAVALKHLLHVAVAQIFY-L 120

Query: 120 SVPVEVIISEYVCIAHDFFYGDEPKF---INAVLDKVSRKEE 158
            +P   ++   V  A+        K+   +NA+L +++R +E
Sbjct: 121 DLPDHSVVDLAVEAAN--SDPRNRKYAGLVNALLRRLARNKE 160


>gi|240015126|ref|ZP_04722039.1| putative 16S RNA methyltransferase [Neisseria gonorrhoeae DGI18]
 gi|268600059|ref|ZP_06134226.1| 16S RNA methyltransferase [Neisseria gonorrhoeae MS11]
 gi|268584190|gb|EEZ48866.1| 16S RNA methyltransferase [Neisseria gonorrhoeae MS11]
          Length = 419

 Score = 45.5 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 23/119 (19%), Positives = 45/119 (37%), Gaps = 13/119 (10%)

Query: 41  ISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRL 100
           + +   +   A  +L  +      D+ +      G       +  +++  L +       
Sbjct: 23  LQDVLAHIRAAHPQLTAQENGALQDIAY------GCQRYLGSLKHMLAQMLKK--PID-- 72

Query: 101 DMILCSILRAGVLELIECHSVPVEVIISEYVC-IAHDFFYGDEPKFINAVLDKVSRKEE 158
           +  L S+L A + +L    + P  V+ +E V  IA     G    F NAVL +  R+ +
Sbjct: 73  NPQLESLLLAALYQLHYTRNAPHAVV-NEAVESIAKI-GRGQYRSFANAVLRRFLRERD 129


>gi|153802771|ref|ZP_01957357.1| sun protein [Vibrio cholerae MZO-3]
 gi|124121684|gb|EAY40427.1| sun protein [Vibrio cholerae MZO-3]
          Length = 434

 Score = 45.5 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 32/139 (23%), Positives = 51/139 (36%), Gaps = 16/139 (11%)

Query: 20  RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79
           R AA  ALYQ+  +G S ++ +                +      D    + I +GV+ +
Sbjct: 12  RAAAASALYQVVDLGHSLSDAL-------------PAAQQQIRPRDHALLQEICYGVLRQ 58

Query: 80  KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139
              +   IS  L EK        +   ++  G+ +L     +P    + E V  A D   
Sbjct: 59  LPRL-ESISQALMEK-PLKGKQRVFHFLILVGLYQLSFMR-IPAHAAVGETVEGAQDLKG 115

Query: 140 GDEPKFINAVLDKVSRKEE 158
                 INAVL    R +E
Sbjct: 116 PRLRGLINAVLRNYQRDQE 134


>gi|262040752|ref|ZP_06013983.1| RNA methyltransferase Sun [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
 gi|259041896|gb|EEW42936.1| RNA methyltransferase Sun [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
          Length = 431

 Score = 45.5 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 25/140 (17%), Positives = 52/140 (37%), Gaps = 16/140 (11%)

Query: 20  RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79
           R  A QA+ Q+   G S + ++               ++      D    + +  GV+  
Sbjct: 8   RSLAAQAIEQVIEKGQSLSNVL-------------PPLQQKVSDKDKALLQELCFGVLRT 54

Query: 80  KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139
              ++ LIS  +    +  +    +  ++  G+ +L+    +P    ++E V  A     
Sbjct: 55  LSQLEWLISKLMARPMTGKQ--RTVHFLIMVGLYQLLYTR-IPPHAALAETVEGAVAIKR 111

Query: 140 GDEPKFINAVLDKVSRKEEI 159
                 IN VL +  R++E 
Sbjct: 112 PQLKGLINGVLRQFQRQQEA 131


>gi|240017576|ref|ZP_04724116.1| putative 16S RNA methyltransferase [Neisseria gonorrhoeae FA6140]
 gi|240113994|ref|ZP_04728484.1| putative 16S RNA methyltransferase [Neisseria gonorrhoeae MS11]
 gi|240122197|ref|ZP_04735159.1| putative 16S RNA methyltransferase [Neisseria gonorrhoeae PID24-1]
          Length = 417

 Score = 45.5 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 23/119 (19%), Positives = 45/119 (37%), Gaps = 13/119 (10%)

Query: 41  ISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRL 100
           + +   +   A  +L  +      D+ +      G       +  +++  L +       
Sbjct: 21  LQDVLAHIRAAHPQLTAQENGALQDIAY------GCQRYLGSLKHMLAQMLKK--PID-- 70

Query: 101 DMILCSILRAGVLELIECHSVPVEVIISEYVC-IAHDFFYGDEPKFINAVLDKVSRKEE 158
           +  L S+L A + +L    + P  V+ +E V  IA     G    F NAVL +  R+ +
Sbjct: 71  NPQLESLLLAALYQLHYTRNAPHAVV-NEAVESIAKI-GRGQYRSFANAVLRRFLRERD 127


>gi|256160512|ref|ZP_05458201.1| Sun [Brucella ceti M490/95/1]
 gi|256255718|ref|ZP_05461254.1| Sun [Brucella ceti B1/94]
 gi|261222929|ref|ZP_05937210.1| fmu domain-containing protein [Brucella ceti B1/94]
 gi|265998888|ref|ZP_06111445.1| fmu domain-containing protein [Brucella ceti M490/95/1]
 gi|260921513|gb|EEX88166.1| fmu domain-containing protein [Brucella ceti B1/94]
 gi|262553577|gb|EEZ09346.1| fmu domain-containing protein [Brucella ceti M490/95/1]
          Length = 465

 Score = 45.5 bits (107), Expect = 0.003,   Method: Composition-based stats.
 Identities = 28/162 (17%), Positives = 54/162 (33%), Gaps = 23/162 (14%)

Query: 2   TIQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVY 61
           T  ++  DL+       ARL A + L            +I +  +     D         
Sbjct: 17  TNSNSAADLRPGL---AARLCAARLL----------GAVIEKNTSLDGLTDNAHGHPQYL 63

Query: 62  L--HVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECH 119
                D    R I+   +  +  I+  I+  L          + L  +L   V ++    
Sbjct: 64  ALEPRDRALVRAILGSALRNRGSIERAINKRLDR--PLPENAVALKHLLHVAVAQIFY-L 120

Query: 120 SVPVEVIISEYVCIAHDFFYGDEPKF---INAVLDKVSRKEE 158
            +P    +   V  A+        K+   +NA+L +++R +E
Sbjct: 121 DLPDHSAVDLAVEAAN--SDPRNRKYAGLVNALLRRLARNKE 160


>gi|261391650|emb|CAX49098.1| ribosomal RNA small subunit methyltransferase B (rRNA
           (cytosine-C(5)-)-methyltransferase; 16S rRNA m5C967
           methyltransferase) [Neisseria meningitidis 8013]
          Length = 419

 Score = 45.5 bits (107), Expect = 0.003,   Method: Composition-based stats.
 Identities = 23/119 (19%), Positives = 45/119 (37%), Gaps = 13/119 (10%)

Query: 41  ISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRL 100
           + +   +   A  +L  +      D+ +      G       +  +++  L +       
Sbjct: 23  LQDVLVHIRAAHPDLTAQENGALQDIAY------GCQRYLGSLKHMLAQMLKK--PID-- 72

Query: 101 DMILCSILRAGVLELIECHSVPVEVIISEYVC-IAHDFFYGDEPKFINAVLDKVSRKEE 158
           +  L S+L A + +L    + P  V+ +E V  IA     G    F NAVL +  R+ +
Sbjct: 73  NPQLESLLLAALYQLHYTRNAPHAVV-NEAVESIAKI-GRGQYRSFANAVLRRFLRERD 129


>gi|94987318|ref|YP_595251.1| tRNA and rRNA cytosine-C5-methylases [Lawsonia intracellularis
           PHE/MN1-00]
 gi|94731567|emb|CAJ54930.1| tRNA and rRNA cytosine-C5-methylases [Lawsonia intracellularis
           PHE/MN1-00]
          Length = 447

 Score = 45.5 bits (107), Expect = 0.003,   Method: Composition-based stats.
 Identities = 26/155 (16%), Positives = 49/155 (31%), Gaps = 17/155 (10%)

Query: 6   NKKDLKLSHRRGI--ARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLH 63
              + K ++R+    AR  A  AL Q    G     +++              +      
Sbjct: 3   KSPEKKYTNRKKTKTAREIATIAL-QKIKEGQPIQVLLNNIL-----------LTYPLSK 50

Query: 64  VDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPV 123
            D+     +++G +  +  I  ++   L +      L   +  I+     EL+    +P 
Sbjct: 51  QDIALVTELVYGYLRLEIRIVWILEQFLKKS---EHLPYEVKLIIGLATYELLFLDKIPP 107

Query: 124 EVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEE 158
              I   V      F        NA L  + RK +
Sbjct: 108 YATIHTAVSTIKSKFGKILAGVANASLQTIFRKSK 142


>gi|319404848|emb|CBI78449.1| SUN-family protein [Bartonella rochalimae ATCC BAA-1498]
          Length = 456

 Score = 45.5 bits (107), Expect = 0.003,   Method: Composition-based stats.
 Identities = 20/100 (20%), Positives = 37/100 (37%), Gaps = 8/100 (8%)

Query: 65  DLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVE 124
           D    R I+   +  +  I + +S  L            L  +L   + +++    +P  
Sbjct: 58  DRLLCRAILGAALRHRSQITVALSRFLVR--PLPAQAFSLHHLLHISITQILY-LDIPDH 114

Query: 125 VIISEYVCIAHDFFYGDEPKF---INAVLDKVSRKEEIKR 161
             I   V +A        P+F   +NA+L   +R+  I R
Sbjct: 115 AAIDLAVRVAKI--DPRMPRFSGLVNAILRNFAREAPILR 152


>gi|240851336|ref|YP_002972739.1| SUN-family protein [Bartonella grahamii as4aup]
 gi|240268459|gb|ACS52047.1| SUN-family protein [Bartonella grahamii as4aup]
          Length = 454

 Score = 45.5 bits (107), Expect = 0.003,   Method: Composition-based stats.
 Identities = 19/98 (19%), Positives = 35/98 (35%), Gaps = 8/98 (8%)

Query: 62  LHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSV 121
              D    R I+   +  +  I   +S  L        L   L  +L   V +++    +
Sbjct: 54  SQRDRLLCRAILTASLRHRGQITAALSRLLARPLPSQALS--LQHLLHISVAQILY-LDI 110

Query: 122 PVEVIISEYVCIAHDFFYGDEPKF---INAVLDKVSRK 156
           P    I   V +A         +F   +NA+L  ++R+
Sbjct: 111 PDHAAIDLAVRVAK--LDPRMRRFSGVVNALLRNIARE 146


>gi|91975197|ref|YP_567856.1| Fmu (Sun) [Rhodopseudomonas palustris BisB5]
 gi|91681653|gb|ABE37955.1| Fmu (Sun) [Rhodopseudomonas palustris BisB5]
          Length = 450

 Score = 45.5 bits (107), Expect = 0.003,   Method: Composition-based stats.
 Identities = 21/131 (16%), Positives = 46/131 (35%), Gaps = 14/131 (10%)

Query: 37  TTEIISEYETYRFCADTELDVESVYL------HVDLEWFRVIIHGVMDRKQHIDLLISSC 90
             +I+      R   D +L+  + +         D    R ++  ++ R   ++ L++  
Sbjct: 21  AADILDGVLQKRRTLDEQLEGPAAHPGLKTLPDRDRALMRRLVATILRRLGTLEHLLARM 80

Query: 91  LTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKF---IN 147
           L              S L  G  +++    VP    +   V +          K+   +N
Sbjct: 81  LDRGVPTD--APRAKSALLIGAAQILWM-DVPDHAAVDLSVRLVQ--SDRRAAKYAGLVN 135

Query: 148 AVLDKVSRKEE 158
           AVL + +R+ +
Sbjct: 136 AVLRRCAREGQ 146


>gi|293398234|ref|ZP_06642439.1| ribosomal RNA small subunit methyltransferase B [Neisseria
           gonorrhoeae F62]
 gi|291611497|gb|EFF40567.1| ribosomal RNA small subunit methyltransferase B [Neisseria
           gonorrhoeae F62]
          Length = 419

 Score = 45.5 bits (107), Expect = 0.003,   Method: Composition-based stats.
 Identities = 23/119 (19%), Positives = 45/119 (37%), Gaps = 13/119 (10%)

Query: 41  ISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRL 100
           + +   +   A  +L  +      D+ +      G       +  +++  L +       
Sbjct: 23  LQDVLAHIRAAHPQLTAQENGALQDIAY------GCQRYLGSLKHMLAQMLKK--PID-- 72

Query: 101 DMILCSILRAGVLELIECHSVPVEVIISEYVC-IAHDFFYGDEPKFINAVLDKVSRKEE 158
           +  L S+L A + +L    + P  V+ +E V  IA     G    F NAVL +  R+ +
Sbjct: 73  NPQLESLLLAALYQLHYTRNAPHAVV-NEAVESIAKI-GRGQYRSFANAVLRRFLRERD 129


>gi|149203489|ref|ZP_01880459.1| ribosomal RNA small subunit methyltransferase B, putative
           [Roseovarius sp. TM1035]
 gi|149143322|gb|EDM31361.1| ribosomal RNA small subunit methyltransferase B, putative
           [Roseovarius sp. TM1035]
          Length = 422

 Score = 45.5 bits (107), Expect = 0.003,   Method: Composition-based stats.
 Identities = 23/110 (20%), Positives = 40/110 (36%), Gaps = 20/110 (18%)

Query: 59  SVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIEC 118
                 D    + +    +      D L+S  L +         +  ++LR   +EL + 
Sbjct: 36  EPLAPADRARAQRLASETLRGLARADRLLSRHLRKGPPL----PV-QNVLRLATVELAQG 90

Query: 119 HSVPVEVIISEYVCIAHDFFYGDEPK------FINAVLDKVSRKEEIKRS 162
                  ++++ V I      G  P+       +NAVL KV+  EE  RS
Sbjct: 91  GESHG--VVNDAVDI-----IGQSPRHANLKGLVNAVLRKVA--EEAPRS 131


>gi|294669086|ref|ZP_06734172.1| ribosomal RNA small subunit methyltransferase B [Neisseria elongata
           subsp. glycolytica ATCC 29315]
 gi|291309078|gb|EFE50321.1| ribosomal RNA small subunit methyltransferase B [Neisseria elongata
           subsp. glycolytica ATCC 29315]
          Length = 420

 Score = 45.5 bits (107), Expect = 0.003,   Method: Composition-based stats.
 Identities = 26/134 (19%), Positives = 52/134 (38%), Gaps = 10/134 (7%)

Query: 29  QIDIIGCSTTEIISEYETYRFCADTELDVESVYLHV---DLEWFRVIIHGVMDRKQHIDL 85
            + +      E I+     R   D    + + +  +   +L   + I +G       +  
Sbjct: 2   SMSLAQQLAAESIAAVAKGRNLQDVLAAIRAAHPELTAQELGALQDIAYGCQRYLGSLKY 61

Query: 86  LISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVC-IAHDFFYGDEPK 144
           +++  L +       +  L S+L A + +L    + P  V+ +E V  IA     G    
Sbjct: 62  MLAQMLKK--PIG--NPQLESLLLAALYQLNHTRNAPHAVV-NEAVENIAKI-GRGQYRS 115

Query: 145 FINAVLDKVSRKEE 158
           F NA+L +  R++E
Sbjct: 116 FANAILRRFLREKE 129


>gi|319780892|ref|YP_004140368.1| Fmu (Sun) domain protein [Mesorhizobium ciceri biovar biserrulae
           WSM1271]
 gi|317166780|gb|ADV10318.1| Fmu (Sun) domain protein [Mesorhizobium ciceri biovar biserrulae
           WSM1271]
          Length = 475

 Score = 45.1 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 19/109 (17%), Positives = 40/109 (36%), Gaps = 8/109 (7%)

Query: 65  DLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVE 124
           D    R I+   +  +  I  L++  L +    +     L  IL     +++    +P  
Sbjct: 81  DRGLVRAILVTALRYRMTISGLLARRLEKPLPPN--ATALSHILHVAAAQILF-LDIPDS 137

Query: 125 VIISEYVCIAHDFFYGDEPKF---INAVLDKVSRKEEIKRSGCVSAITQ 170
             +   V  A         +F   +N VL  ++R +E +    ++A  +
Sbjct: 138 AAVDIAVTHAK--SDPRTVRFSGLVNGVLRTLARAKETELPAALAATDE 184


>gi|62290679|ref|YP_222472.1| Sun, sun protein [Brucella abortus bv. 1 str. 9-941]
 gi|82700594|ref|YP_415168.1| hypothetical protein BAB1_1822 [Brucella melitensis biovar Abortus
           2308]
 gi|148559652|ref|YP_001259653.1| sun protein [Brucella ovis ATCC 25840]
 gi|189024891|ref|YP_001935659.1| Sun [Brucella abortus S19]
 gi|237816180|ref|ZP_04595175.1| Sun, sun protein [Brucella abortus str. 2308 A]
 gi|254689968|ref|ZP_05153222.1| Sun [Brucella abortus bv. 6 str. 870]
 gi|254698119|ref|ZP_05159947.1| Sun [Brucella abortus bv. 2 str. 86/8/59]
 gi|254708333|ref|ZP_05170161.1| Sun [Brucella pinnipedialis M163/99/10]
 gi|254708815|ref|ZP_05170626.1| Sun [Brucella pinnipedialis B2/94]
 gi|254731003|ref|ZP_05189581.1| Sun [Brucella abortus bv. 4 str. 292]
 gi|256030341|ref|ZP_05443955.1| Sun [Brucella pinnipedialis M292/94/1]
 gi|256061838|ref|ZP_05451973.1| Sun [Brucella neotomae 5K33]
 gi|256258223|ref|ZP_05463759.1| Sun [Brucella abortus bv. 9 str. C68]
 gi|256370218|ref|YP_003107729.1| sun protein [Brucella microti CCM 4915]
 gi|260547084|ref|ZP_05822822.1| conserved hypothetical protein [Brucella abortus NCTC 8038]
 gi|260755503|ref|ZP_05867851.1| fmu domain-containing protein [Brucella abortus bv. 6 str. 870]
 gi|260758726|ref|ZP_05871074.1| fmu domain-containing protein [Brucella abortus bv. 4 str. 292]
 gi|260762560|ref|ZP_05874897.1| fmu domain-containing protein [Brucella abortus bv. 2 str. 86/8/59]
 gi|260884524|ref|ZP_05896138.1| fmu domain-containing protein [Brucella abortus bv. 9 str. C68]
 gi|261315833|ref|ZP_05955030.1| fmu domain-containing protein [Brucella pinnipedialis M163/99/10]
 gi|261316307|ref|ZP_05955504.1| fmu domain-containing protein [Brucella pinnipedialis B2/94]
 gi|261325843|ref|ZP_05965040.1| fmu domain-containing protein [Brucella neotomae 5K33]
 gi|265987375|ref|ZP_06099932.1| fmu domain-containing protein [Brucella pinnipedialis M292/94/1]
 gi|294851054|ref|ZP_06791730.1| ribosomal RNA small subunit methyltransferase B [Brucella sp. NVSL
           07-0026]
 gi|297249071|ref|ZP_06932779.1| ribosomal RNA small subunit methyltransferase B [Brucella abortus
           bv. 5 str. B3196]
 gi|62196811|gb|AAX75111.1| Sun, sun protein [Brucella abortus bv. 1 str. 9-941]
 gi|82616695|emb|CAJ11778.1| SAM (and some other nucleotide) binding motif:Bacterial
           Sun/eukaryotic nucleolar Nop1/Nop2:Antitermination
           protein NusB:NusB [Brucella melitensis biovar Abortus
           2308]
 gi|148370909|gb|ABQ60888.1| sun protein [Brucella ovis ATCC 25840]
 gi|189020463|gb|ACD73185.1| Sun [Brucella abortus S19]
 gi|237788642|gb|EEP62855.1| Sun, sun protein [Brucella abortus str. 2308 A]
 gi|256000381|gb|ACU48780.1| sun protein [Brucella microti CCM 4915]
 gi|260095449|gb|EEW79327.1| conserved hypothetical protein [Brucella abortus NCTC 8038]
 gi|260669044|gb|EEX55984.1| fmu domain-containing protein [Brucella abortus bv. 4 str. 292]
 gi|260672986|gb|EEX59807.1| fmu domain-containing protein [Brucella abortus bv. 2 str. 86/8/59]
 gi|260675611|gb|EEX62432.1| fmu domain-containing protein [Brucella abortus bv. 6 str. 870]
 gi|260874052|gb|EEX81121.1| fmu domain-containing protein [Brucella abortus bv. 9 str. C68]
 gi|261295530|gb|EEX99026.1| fmu domain-containing protein [Brucella pinnipedialis B2/94]
 gi|261301823|gb|EEY05320.1| fmu domain-containing protein [Brucella neotomae 5K33]
 gi|261304859|gb|EEY08356.1| fmu domain-containing protein [Brucella pinnipedialis M163/99/10]
 gi|264659572|gb|EEZ29833.1| fmu domain-containing protein [Brucella pinnipedialis M292/94/1]
 gi|294821697|gb|EFG38693.1| ribosomal RNA small subunit methyltransferase B [Brucella sp. NVSL
           07-0026]
 gi|297174204|gb|EFH33561.1| ribosomal RNA small subunit methyltransferase B [Brucella abortus
           bv. 5 str. B3196]
          Length = 465

 Score = 45.1 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 28/162 (17%), Positives = 54/162 (33%), Gaps = 23/162 (14%)

Query: 2   TIQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVY 61
           T  ++  DL+       ARL A + L            +I +  +     D         
Sbjct: 17  TNSNSAADLRPGL---AARLCAARLL----------GAVIEKNTSLDGLTDNAHGHPQYL 63

Query: 62  L--HVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECH 119
                D    R I+   +  +  I+  I+  L          + L  +L   V ++    
Sbjct: 64  ALEPRDRALVRAILGSALRNRGSIERAINKRLDR--PLPENAVALKHLLHVAVAQIFY-L 120

Query: 120 SVPVEVIISEYVCIAHDFFYGDEPKF---INAVLDKVSRKEE 158
            +P    +   V  A+        K+   +NA+L +++R +E
Sbjct: 121 DLPDHSAVDLAVEAAN--SDPRNRKYAGLVNALLRRLARNKE 160


>gi|296114826|ref|ZP_06833475.1| Fmu (Sun) domain protein [Gluconacetobacter hansenii ATCC 23769]
 gi|295978640|gb|EFG85369.1| Fmu (Sun) domain protein [Gluconacetobacter hansenii ATCC 23769]
          Length = 438

 Score = 45.1 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 30/161 (18%), Positives = 59/161 (36%), Gaps = 15/161 (9%)

Query: 1   MTIQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESV 60
           M      +    S RR   R A  QA    D       +I++    +R   +T ++   V
Sbjct: 1   MKQTSAPRS---SGRRATGRGA--QAA-PADPTRDIAFDIVTGVIEHRRMLETSMENSPV 54

Query: 61  YLHV---DLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIE 117
                  D      +   V+        ++S  L ++      + +  ++L  GV +L+ 
Sbjct: 55  ARQAEPRDRAAAHRLGASVLRHMGTATEVLSPFLKKEPP----EPV-RAVLLIGVAQLLF 109

Query: 118 CHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEE 158
               PV   ++  V +A           +NAVL ++++K +
Sbjct: 110 -LGTPVHAAVATSVALARRRGLAPFAGLVNAVLRRIAQKGD 149


>gi|254714655|ref|ZP_05176466.1| Sun [Brucella ceti M644/93/1]
 gi|254717553|ref|ZP_05179364.1| Sun [Brucella ceti M13/05/1]
 gi|261219386|ref|ZP_05933667.1| fmu domain-containing protein [Brucella ceti M13/05/1]
 gi|261322448|ref|ZP_05961645.1| fmu domain-containing protein [Brucella ceti M644/93/1]
 gi|260924475|gb|EEX91043.1| fmu domain-containing protein [Brucella ceti M13/05/1]
 gi|261295138|gb|EEX98634.1| fmu domain-containing protein [Brucella ceti M644/93/1]
          Length = 465

 Score = 45.1 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 28/162 (17%), Positives = 54/162 (33%), Gaps = 23/162 (14%)

Query: 2   TIQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVY 61
           T  ++  DL+       ARL A + L            +I +  +     D         
Sbjct: 17  TNSNSAADLRPGL---AARLCAARLL----------GAVIEKNTSLDGLTDNAHGHPQYL 63

Query: 62  L--HVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECH 119
                D    R I+   +  +  I+  I+  L          + L  +L   V ++    
Sbjct: 64  ALEPRDRALVRAILGSALRNRGSIERAINKRLDR--PLPENAVALKHLLHVAVAQIFY-L 120

Query: 120 SVPVEVIISEYVCIAHDFFYGDEPKF---INAVLDKVSRKEE 158
            +P    +   V  A+        K+   +NA+L +++R +E
Sbjct: 121 DLPDHSAVDLAVEAAN--SDPRNRKYAGLVNALLRRLARNKE 160


>gi|86747213|ref|YP_483709.1| RNA methyltransferase [Rhodopseudomonas palustris HaA2]
 gi|86570241|gb|ABD04798.1| RNA methyltransferase [Rhodopseudomonas palustris HaA2]
          Length = 450

 Score = 45.1 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 21/129 (16%), Positives = 45/129 (34%), Gaps = 14/129 (10%)

Query: 37  TTEIISEYETYRFCADTELDVESVYL------HVDLEWFRVIIHGVMDRKQHIDLLISSC 90
             +I+      R   D +L+  + +         D    R ++  ++ R   ++ L++  
Sbjct: 21  AADILDGVLQKRRMLDDQLEGPAAHPGLKTLPDRDRALMRRLVATILRRLGTLEHLLARM 80

Query: 91  LTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKF---IN 147
           L              S L  G  +++    VP    +   V +          K+   +N
Sbjct: 81  LDRGVPTD--APRAKSALLIGAAQILWM-DVPDHAAVDLSVRLVQ--SDRRAAKYAGLVN 135

Query: 148 AVLDKVSRK 156
           AVL + +R+
Sbjct: 136 AVLRRCARE 144


>gi|241760436|ref|ZP_04758530.1| ribosomal RNA small subunit methyltransferase B [Neisseria
           flavescens SK114]
 gi|241319105|gb|EER55598.1| ribosomal RNA small subunit methyltransferase B [Neisseria
           flavescens SK114]
          Length = 417

 Score = 45.1 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 24/126 (19%), Positives = 48/126 (38%), Gaps = 17/126 (13%)

Query: 34  GCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTE 93
           G +  ++++E       A  +L  +      D+ +      G       +  ++   L +
Sbjct: 18  GRNLQDVLAEIRA----AHPQLTAQENGALQDIAY------GCQRYLGSLKHMLGQMLKK 67

Query: 94  KWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVC-IAHDFFYGDEPKFINAVLDK 152
                  +  L S+L A + +L    + P  V+ +E V  IA     G    F NA+L +
Sbjct: 68  --PID--NPQLESLLLAAMYQLHYTRNAPHAVV-NEAVESIAKI-GRGQFRSFANAILRR 121

Query: 153 VSRKEE 158
             R+ +
Sbjct: 122 FLRERD 127


>gi|225075469|ref|ZP_03718668.1| hypothetical protein NEIFLAOT_00474 [Neisseria flavescens
           NRL30031/H210]
 gi|224953188|gb|EEG34397.1| hypothetical protein NEIFLAOT_00474 [Neisseria flavescens
           NRL30031/H210]
          Length = 419

 Score = 45.1 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 24/126 (19%), Positives = 48/126 (38%), Gaps = 17/126 (13%)

Query: 34  GCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTE 93
           G +  ++++E       A  +L  +      D+ +      G       +  ++   L +
Sbjct: 20  GRNLQDVLAEIRA----AHPQLTAQENGALQDIAY------GCQRYLGSLKHMLGQMLKK 69

Query: 94  KWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVC-IAHDFFYGDEPKFINAVLDK 152
                  +  L S+L A + +L    + P  V+ +E V  IA     G    F NA+L +
Sbjct: 70  --PID--NPQLESLLLAAMYQLHYTRNAPHAVV-NEAVESIAKI-GRGQFRSFANAILRR 123

Query: 153 VSRKEE 158
             R+ +
Sbjct: 124 FLRERD 129


>gi|117618823|ref|YP_854784.1| ribosomal RNA small subunit methyltransferase B [Aeromonas
           hydrophila subsp. hydrophila ATCC 7966]
 gi|117560230|gb|ABK37178.1| ribosomal RNA small subunit methyltransferase B [Aeromonas
           hydrophila subsp. hydrophila ATCC 7966]
          Length = 430

 Score = 45.1 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 16/103 (15%), Positives = 33/103 (32%), Gaps = 3/103 (2%)

Query: 57  VESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELI 116
            +      D    + + +G +     +D  +   + +         I   ++  G+ +LI
Sbjct: 28  AQEKVAPRDRALLQELCYGTLRWLPRLDAAVGEMMDK--PLKNKSRIFHYLILVGLYQLI 85

Query: 117 ECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEI 159
               +P    ++E V              IN VL    R  E+
Sbjct: 86  YTR-IPAHAAVAETVNAVKLLKGTSLRGLINGVLRNFQRSAEV 127


>gi|121999099|ref|YP_001003886.1| sun protein [Halorhodospira halophila SL1]
 gi|121590504|gb|ABM63084.1| 16S rRNA m(5)C-967 methyltransferase [Halorhodospira halophila SL1]
          Length = 429

 Score = 45.1 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 26/137 (18%), Positives = 50/137 (36%), Gaps = 18/137 (13%)

Query: 20  RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79
           R+AAV  L            ++   ET     + +    S     +    + +++G +  
Sbjct: 6   RVAAVHVL----------ERVLERGETLDEALEAQF---SRVSERNRSLLQALVYGALRW 52

Query: 80  KQHIDLLISSCLTEK-WSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFF 138
              ++  +++      W   R D +L  +L  G  E  +  + P    +SE V  A    
Sbjct: 53  LTRLEAQVATLTPRDDW---RADPLLRGLLVIGAWE-AQGLATPAHAAVSEAVDAARRLR 108

Query: 139 YGDEPKFINAVLDKVSR 155
                  +NAVL K+ +
Sbjct: 109 RARAAGMVNAVLRKLHK 125


>gi|325129148|gb|EGC51996.1| ribosomal RNA small subunit methyltransferase B [Neisseria
           meningitidis N1568]
          Length = 419

 Score = 45.1 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 22/119 (18%), Positives = 45/119 (37%), Gaps = 13/119 (10%)

Query: 41  ISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRL 100
           + +   +   A  +L  +      D+ +      G       +  +++  L +       
Sbjct: 23  LQDVLVHIRAAHPDLTAQENGALQDIAY------GCQRYLGSLKHMLAQMLKK--PID-- 72

Query: 101 DMILCSILRAGVLELIECHSVPVEVIISEYVC-IAHDFFYGDEPKFINAVLDKVSRKEE 158
           +  L S+L A + +L    + P  V+ +E V  IA     G    F NA+L +  R+ +
Sbjct: 73  NPQLESLLLAALYQLHYTRNAPHAVV-NEAVESIAKI-GRGQYRSFANAILRRFLRERD 129


>gi|320547878|ref|ZP_08042161.1| RNA methyltransferase Sun [Streptococcus equinus ATCC 9812]
 gi|320447418|gb|EFW88178.1| RNA methyltransferase Sun [Streptococcus equinus ATCC 9812]
          Length = 440

 Score = 45.1 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 27/143 (18%), Positives = 60/143 (41%), Gaps = 15/143 (10%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           +  AR  A+  L           E + E   Y   A  +    +     D      I++G
Sbjct: 6   KNQARGLALLVL-----------ENVFEEGAYSNIALNQELKHTHLSQKDKSLVTEIVYG 54

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
            + RK  ++  ++  + ++    +LD  +  +L   + +L+    +P   ++++ V IA 
Sbjct: 55  TVARKITLEWYLAHYIEDR---DKLDSWVYYLLMLSLYQLLYLDKMPAHAVVNDAVNIAK 111

Query: 136 DFFYGDEP-KFINAVLDKVSRKE 157
           +        KF+NAVL ++++ +
Sbjct: 112 NRGNKKGAEKFVNAVLRRLTKDD 134


>gi|49474771|ref|YP_032813.1| SUN protein (Fmu protein) [Bartonella quintana str. Toulouse]
 gi|49240275|emb|CAF26748.1| SUN protein (FMU protein) [Bartonella quintana str. Toulouse]
          Length = 447

 Score = 45.1 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 22/122 (18%), Positives = 42/122 (34%), Gaps = 10/122 (8%)

Query: 40  IISEYETYRFCADTELDVESVY--LHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSF 97
           ++ ++ +     D E          H D    R I+   +  +  I   +S  LT     
Sbjct: 22  VLDKHTSLAGLTDNEHGHPQYLGLSHRDRLLCRAILGAALRHRGQITAALSRFLTRPLPL 81

Query: 98  SRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKF---INAVLDKVS 154
                 L  +L   V +++    +P    I   V +A         +F   +N +L  V+
Sbjct: 82  QAFS--LQHLLHISVAQILY-LDIPDHAAIDLAVRVAKI--DPRMRRFSGLVNVLLRNVA 136

Query: 155 RK 156
           R+
Sbjct: 137 RE 138


>gi|23502667|ref|NP_698794.1| sun protein [Brucella suis 1330]
 gi|161619734|ref|YP_001593621.1| Fmu (Sun) domain-containing protein [Brucella canis ATCC 23365]
 gi|163845392|ref|YP_001623047.1| hypothetical protein BSUIS_B1292 [Brucella suis ATCC 23445]
 gi|254703581|ref|ZP_05165409.1| hypothetical protein Bsuib36_06589 [Brucella suis bv. 3 str. 686]
 gi|260568886|ref|ZP_05839354.1| conserved hypothetical protein [Brucella suis bv. 4 str. 40]
 gi|261754214|ref|ZP_05997923.1| fmu domain-containing protein [Brucella suis bv. 3 str. 686]
 gi|23348676|gb|AAN30709.1| sun protein [Brucella suis 1330]
 gi|161336545|gb|ABX62850.1| Fmu (Sun) domain protein [Brucella canis ATCC 23365]
 gi|163676115|gb|ABY40225.1| Hypothetical protein, conserved [Brucella suis ATCC 23445]
 gi|260154270|gb|EEW89352.1| conserved hypothetical protein [Brucella suis bv. 4 str. 40]
 gi|261743967|gb|EEY31893.1| fmu domain-containing protein [Brucella suis bv. 3 str. 686]
          Length = 465

 Score = 45.1 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 28/162 (17%), Positives = 53/162 (32%), Gaps = 23/162 (14%)

Query: 2   TIQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVY 61
           T  ++  DL+       ARL A + L            +I +  +     D         
Sbjct: 17  TNSNSAADLRPGL---AARLCAARLL----------GAVIEKNTSLDGLTDNAHGHPQYL 63

Query: 62  L--HVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECH 119
                D    R I+   +  +  I+  I+  L          + L  +L   V ++    
Sbjct: 64  ALEPRDRALVRAILGSALRNRGSIERAINKRLDR--PLPENAVALKHLLHVAVAQIFY-L 120

Query: 120 SVPVEVIISEYVCIAHDFFYGDEPKF---INAVLDKVSRKEE 158
            +P    +   V  A+        K+   +NA+L  ++R +E
Sbjct: 121 DLPDHSAVDLAVEAAN--SDPRNRKYAGLVNALLRHLARNKE 160


>gi|330831512|ref|YP_004394464.1| ribosomal RNA small subunit methyltransferase B [Aeromonas veronii
           B565]
 gi|328806648|gb|AEB51847.1| Ribosomal RNA small subunit methyltransferase B [Aeromonas veronii
           B565]
          Length = 430

 Score = 45.1 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 16/103 (15%), Positives = 34/103 (33%), Gaps = 3/103 (2%)

Query: 57  VESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELI 116
            +      D    + + +G +     +D  ++  + +         I   ++  G+ +LI
Sbjct: 28  AQEKVAPRDRALLQELCYGTLRWLPRLDAAVNEMMDK--PLKNKSRIFHYLILVGLYQLI 85

Query: 117 ECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEI 159
               +P    ++E V              IN VL    R  E+
Sbjct: 86  YTR-IPAHAAVAETVNAVKLLKGTSLRGLINGVLRNFQRSAEV 127


>gi|85714014|ref|ZP_01045003.1| tRNA and rRNA methylase [Nitrobacter sp. Nb-311A]
 gi|85699140|gb|EAQ37008.1| tRNA and rRNA methylase [Nitrobacter sp. Nb-311A]
          Length = 454

 Score = 45.1 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 22/133 (16%), Positives = 46/133 (34%), Gaps = 14/133 (10%)

Query: 36  STTEIISEYETYRFCADTELDVESVYL------HVDLEWFRVIIHGVMDRKQHIDLLISS 89
           +  +I+      R   D +L+  + +         D    R ++  ++ R   +  L+S 
Sbjct: 24  TAADILDGILHKRRTLDEQLEGATAHPGLKALADRDRALMRRLVATILRRLGTLGHLLSR 83

Query: 90  CLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKF---I 146
            L              S L  G  +++    VP    +   V +          K+   +
Sbjct: 84  LLDRGIPTD--APRAQSALLIGAAQILWM-DVPDHAAVDLSVRLVQ--SDRRAAKYAGLV 138

Query: 147 NAVLDKVSRKEEI 159
           NAVL + +R+ + 
Sbjct: 139 NAVLRRCAREGQA 151


>gi|88809208|ref|ZP_01124717.1| Sun protein (Fmu protein) [Synechococcus sp. WH 7805]
 gi|88787150|gb|EAR18308.1| Sun protein (Fmu protein) [Synechococcus sp. WH 7805]
          Length = 430

 Score = 45.1 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 15/104 (14%), Positives = 34/104 (32%), Gaps = 18/104 (17%)

Query: 64  VDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMI--------LCSILRAGVLEL 115
            D      + +G +  +Q +D          W   +L  +        L  +L  G+ ++
Sbjct: 31  ADRGLATELAYGTIRWRQWLDA---------W-LDKLGKVPARKQPPRLRWLLHLGLYQV 80

Query: 116 IECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEI 159
           +    +P    ++  V +A           +N +L    R  + 
Sbjct: 81  LRMERIPPAAAVNTSVELAKGGPLARLAPVVNGLLRAALRARDA 124


>gi|254502120|ref|ZP_05114271.1| ribosomal RNA small subunit methyltransferase B [Labrenzia
           alexandrii DFL-11]
 gi|222438191|gb|EEE44870.1| ribosomal RNA small subunit methyltransferase B [Labrenzia
           alexandrii DFL-11]
          Length = 468

 Score = 45.1 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 21/131 (16%), Positives = 43/131 (32%), Gaps = 14/131 (10%)

Query: 37  TTEIISEYETYRFCADTELDVESVY------LHVDLEWFRVIIHGVMDRKQHIDLLISSC 90
             +I+      +   D ELD+ S +         D    R I    +  +  I  ++   
Sbjct: 41  AADILGNVVHKKRPLDGELDMASGHSGFRALAANDRALVRAIAGAALRHRGEITEILGRL 100

Query: 91  LTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKF---IN 147
           L       +   +   IL   + ++     +P    +S  V  A          +   +N
Sbjct: 101 LDRDIP-EKTGRV-LDILHVAIAQMQF-LDIPDRAAVSLAVDHASM--DRRARPYKGLVN 155

Query: 148 AVLDKVSRKEE 158
            VL ++ R+ +
Sbjct: 156 GVLRRLGRERD 166


>gi|145300988|ref|YP_001143829.1| ribosomal RNA small subunit methyltransferase B [Aeromonas
           salmonicida subsp. salmonicida A449]
 gi|142853760|gb|ABO92081.1| ribosomal RNA small subunit methyltransferase B [Aeromonas
           salmonicida subsp. salmonicida A449]
          Length = 430

 Score = 45.1 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 16/103 (15%), Positives = 33/103 (32%), Gaps = 3/103 (2%)

Query: 57  VESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELI 116
            +      D    + + +G +     +D  +   + +         I   ++  G+ +LI
Sbjct: 28  AQEKVAPRDRALLQELCYGTLRWLPRLDAAVGEMMDK--PLKNKSRIFHYLILVGLYQLI 85

Query: 117 ECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEI 159
               +P    ++E V              IN VL    R  E+
Sbjct: 86  YTR-IPAHAAVAETVNAVKLLKGTSLRGLINGVLRNFQRSAEV 127


>gi|261213231|ref|ZP_05927513.1| ribosomal RNA small subunit methyltransferase B [Vibrio sp. RC341]
 gi|260837505|gb|EEX64208.1| ribosomal RNA small subunit methyltransferase B [Vibrio sp. RC341]
          Length = 426

 Score = 45.1 bits (106), Expect = 0.004,   Method: Composition-based stats.
 Identities = 32/139 (23%), Positives = 50/139 (35%), Gaps = 16/139 (11%)

Query: 20  RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79
           R AA  ALYQ+  +G S +  +                +      D    + I +GV+ +
Sbjct: 4   RAAAASALYQVVDLGQSLSNAL-------------PAAQQQIRPRDHALLQEICYGVLRQ 50

Query: 80  KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139
              +   IS  L EK        +   ++  G+ +L     +P    + E V  A D   
Sbjct: 51  LPRL-ESISQALMEK-PLKGKQRVFHFLILVGLYQLSFMR-IPAHAAVGETVEGAQDLKG 107

Query: 140 GDEPKFINAVLDKVSRKEE 158
                 INAVL    R +E
Sbjct: 108 PRLRGLINAVLRNYQRDQE 126


>gi|227823840|ref|YP_002827813.1| Fmu (Sun) domain protein [Sinorhizobium fredii NGR234]
 gi|227342842|gb|ACP27060.1| Fmu (Sun) domain protein [Sinorhizobium fredii NGR234]
          Length = 473

 Score = 45.1 bits (106), Expect = 0.004,   Method: Composition-based stats.
 Identities = 33/175 (18%), Positives = 57/175 (32%), Gaps = 22/175 (12%)

Query: 1   MTIQDNKKDLKLSHRR-------GIARLAA-VQA---LYQIDIIGCSTTEIISEYETYRF 49
           M+ ++NK D +    R       G A+  A +QA   L            +I    +   
Sbjct: 1   MS-ENNKNDSRPKRSRPHKPSRGGGAQSGASLQAKPGLKSRQAAAKILAAVIDRNTSLDG 59

Query: 50  CADTEL--DVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSI 107
             D E            D    R I++  +     I   I S L            L  +
Sbjct: 60  MLDQEHGNPAYRELNDADRALVRAILNSALRHLPRIRAAIDSLLQT--PLPEGARALEHV 117

Query: 108 LRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKF---INAVLDKVSRKEEI 159
           L     +++    +P    +   V  A         +F   +NAVL ++SR+++ 
Sbjct: 118 LTVAAAQILY-LDIPDHSAVDLAVEQAQ--SDPRNRRFASLVNAVLRRLSREKQA 169


>gi|268687548|ref|ZP_06154410.1| 16S RNA methyltransferase [Neisseria gonorrhoeae SK-93-1035]
 gi|268627832|gb|EEZ60232.1| 16S RNA methyltransferase [Neisseria gonorrhoeae SK-93-1035]
          Length = 419

 Score = 45.1 bits (106), Expect = 0.004,   Method: Composition-based stats.
 Identities = 24/119 (20%), Positives = 46/119 (38%), Gaps = 13/119 (10%)

Query: 41  ISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRL 100
           + +   +   A  +L  +      D+ +      G       +  +++  L +     +L
Sbjct: 23  LQDVLAHIRAAHPQLTAQENGALQDIAY------GCQRYLGSLKHMLAQMLKKLIDNPQL 76

Query: 101 DMILCSILRAGVLELIECHSVPVEVIISEYVC-IAHDFFYGDEPKFINAVLDKVSRKEE 158
           +    S+L A + +L    + P  V+ +E V  IA     G    F NAVL +  R+ E
Sbjct: 77  E----SLLLAALYQLHYTRNAPHAVV-NEAVESIAKI-GRGQYRSFANAVLRRFLRERE 129


>gi|240129165|ref|ZP_04741826.1| putative 16S RNA methyltransferase [Neisseria gonorrhoeae
           SK-93-1035]
          Length = 417

 Score = 45.1 bits (106), Expect = 0.004,   Method: Composition-based stats.
 Identities = 24/119 (20%), Positives = 46/119 (38%), Gaps = 13/119 (10%)

Query: 41  ISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRL 100
           + +   +   A  +L  +      D+ +      G       +  +++  L +     +L
Sbjct: 21  LQDVLAHIRAAHPQLTAQENGALQDIAY------GCQRYLGSLKHMLAQMLKKLIDNPQL 74

Query: 101 DMILCSILRAGVLELIECHSVPVEVIISEYVC-IAHDFFYGDEPKFINAVLDKVSRKEE 158
           +    S+L A + +L    + P  V+ +E V  IA     G    F NAVL +  R+ E
Sbjct: 75  E----SLLLAALYQLHYTRNAPHAVV-NEAVESIAKI-GRGQYRSFANAVLRRFLRERE 127


>gi|206577662|ref|YP_002236309.1| ribosomal RNA small subunit methyltransferase B [Klebsiella
           pneumoniae 342]
 gi|224493255|sp|B5XNC2|RSMB_KLEP3 RecName: Full=Ribosomal RNA small subunit methyltransferase B;
           AltName: Full=16S rRNA m5C967 methyltransferase;
           AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
           rsmB
 gi|206566720|gb|ACI08496.1| ribosomal RNA small subunit methyltransferase B [Klebsiella
           pneumoniae 342]
          Length = 431

 Score = 45.1 bits (106), Expect = 0.004,   Method: Composition-based stats.
 Identities = 24/140 (17%), Positives = 52/140 (37%), Gaps = 16/140 (11%)

Query: 20  RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79
           R  A QA+ Q+   G S + ++               ++      D    + +  GV+  
Sbjct: 8   RSLAAQAIEQVIEQGQSLSNVL-------------PPLQQKVSDKDKALLQELCFGVLRT 54

Query: 80  KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139
              ++ LI+  +    +  +    +  ++  G+ +L+    +P    ++E V  A     
Sbjct: 55  LSQLEWLINKLMARPMTGKQ--RTVHFLIMVGLYQLLYTR-IPPHAALAETVEGAVAIKR 111

Query: 140 GDEPKFINAVLDKVSRKEEI 159
                 IN VL +  R++E 
Sbjct: 112 PQLKGLINGVLRQFQRQQEA 131


>gi|288933298|ref|YP_003437357.1| sun protein [Klebsiella variicola At-22]
 gi|288888027|gb|ADC56345.1| sun protein [Klebsiella variicola At-22]
          Length = 431

 Score = 45.1 bits (106), Expect = 0.004,   Method: Composition-based stats.
 Identities = 24/140 (17%), Positives = 52/140 (37%), Gaps = 16/140 (11%)

Query: 20  RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79
           R  A QA+ Q+   G S + ++               ++      D    + +  GV+  
Sbjct: 8   RSLAAQAIEQVIEQGQSLSNVL-------------PPLQQKVSDKDKALLQELCFGVLRT 54

Query: 80  KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139
              ++ LI+  +    +  +    +  ++  G+ +L+    +P    ++E V  A     
Sbjct: 55  LSQLEWLINKLMARPMTGKQ--RTVHFLIMVGLYQLLYTR-IPPHAALAETVEGAVAIKR 111

Query: 140 GDEPKFINAVLDKVSRKEEI 159
                 IN VL +  R++E 
Sbjct: 112 PQLKGLINGVLRQFQRQQEA 131


>gi|154251779|ref|YP_001412603.1| sun protein [Parvibaculum lavamentivorans DS-1]
 gi|154155729|gb|ABS62946.1| sun protein [Parvibaculum lavamentivorans DS-1]
          Length = 440

 Score = 44.7 bits (105), Expect = 0.004,   Method: Composition-based stats.
 Identities = 27/129 (20%), Positives = 51/129 (39%), Gaps = 12/129 (9%)

Query: 37  TTEIISEYETY--RFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEK 94
            T ++ E   +   F A+            D  + R I    + R   ID ++S  + ++
Sbjct: 19  LTAVLKERRAFDDAFIAEAASGHLRNAEPRDRAFARAITATALRRLGTIDHILSLLIDKE 78

Query: 95  WSFSRLDMILCSILRAGVLELIE-CHSVPVEVIISEYVCIAHDFFYGDEPKF---INAVL 150
               R      +ILRAG+ E++    +    V ++  V  A      +   F   +NAVL
Sbjct: 79  LP-KRAGATE-NILRAGLAEILFLRVAAHAAVGMN--VEAASR--DENARHFKALVNAVL 132

Query: 151 DKVSRKEEI 159
            + +R+ + 
Sbjct: 133 RRATREGDA 141


>gi|311277757|ref|YP_003939988.1| sun protein [Enterobacter cloacae SCF1]
 gi|308746952|gb|ADO46704.1| sun protein [Enterobacter cloacae SCF1]
          Length = 429

 Score = 44.7 bits (105), Expect = 0.004,   Method: Composition-based stats.
 Identities = 25/140 (17%), Positives = 53/140 (37%), Gaps = 16/140 (11%)

Query: 20  RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79
           R  A QA+ Q+   G S + ++               ++      D    + +  GV+  
Sbjct: 8   RSLAAQAVEQVVEQGQSLSNVL-------------PPLQQKVADKDRALLQELSFGVLRT 54

Query: 80  KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139
              +D LI+  ++   +  +    +  ++  G+ +L+    +P    ++E V  A     
Sbjct: 55  LPQLDWLITQLMSRPMTGKQ--RTVHYLIMVGLYQLLHTR-IPAHAALAETVEGAVAIKR 111

Query: 140 GDEPKFINAVLDKVSRKEEI 159
                 IN VL +  R++E 
Sbjct: 112 PQLKGLINGVLRQFQRQQEA 131


>gi|238896785|ref|YP_002921530.1| 16S rRNA methyltransferase B [Klebsiella pneumoniae NTUH-K2044]
 gi|238549112|dbj|BAH65463.1| 16S rRNA m5C967 methyltransferase [Klebsiella pneumoniae subsp.
           pneumoniae NTUH-K2044]
          Length = 431

 Score = 44.7 bits (105), Expect = 0.004,   Method: Composition-based stats.
 Identities = 25/140 (17%), Positives = 52/140 (37%), Gaps = 16/140 (11%)

Query: 20  RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79
           R  A QA+ Q+   G S + ++               ++      D    + +  GV+  
Sbjct: 8   RSLAAQAIEQVVEKGQSLSNVL-------------PPLQQKVSDKDKALLQELCFGVLRT 54

Query: 80  KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139
              ++ LIS  +    +  +    +  ++  G+ +L+    +P    ++E V  A     
Sbjct: 55  LSQLEWLISKLMARPMTGKQ--RTVHFLIMVGLYQLLYTR-IPPHAALAETVEGAVAIKR 111

Query: 140 GDEPKFINAVLDKVSRKEEI 159
                 IN VL +  R++E 
Sbjct: 112 PQLKGLINGVLRQFQRQQEA 131


>gi|330002246|ref|ZP_08304257.1| ribosomal RNA small subunit methyltransferase B [Klebsiella sp. MS
           92-3]
 gi|328537385|gb|EGF63634.1| ribosomal RNA small subunit methyltransferase B [Klebsiella sp. MS
           92-3]
          Length = 431

 Score = 44.7 bits (105), Expect = 0.004,   Method: Composition-based stats.
 Identities = 25/140 (17%), Positives = 52/140 (37%), Gaps = 16/140 (11%)

Query: 20  RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79
           R  A QA+ Q+   G S + ++               ++      D    + +  GV+  
Sbjct: 8   RSLAAQAIEQVVEKGQSLSNVL-------------PPLQQKVSDKDKALLQELCFGVLRT 54

Query: 80  KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139
              ++ LIS  +    +  +    +  ++  G+ +L+    +P    ++E V  A     
Sbjct: 55  LSQLEWLISKLMARPMTGKQ--RTVHFLIMVGLYQLLYTR-IPPHAALAETVEGAVAIKR 111

Query: 140 GDEPKFINAVLDKVSRKEEI 159
                 IN VL +  R++E 
Sbjct: 112 PQLKGLINGVLRQFQRQQEA 131


>gi|306841594|ref|ZP_07474291.1| Sun [Brucella sp. BO2]
 gi|306288340|gb|EFM59703.1| Sun [Brucella sp. BO2]
          Length = 464

 Score = 44.7 bits (105), Expect = 0.004,   Method: Composition-based stats.
 Identities = 18/97 (18%), Positives = 37/97 (38%), Gaps = 8/97 (8%)

Query: 65  DLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVE 124
           D    R I+   +  +  I+  I+  L          + L  +L   V ++     +P  
Sbjct: 68  DRALVRAILGSALRNRGSIERAINKRLDR--PLPENAVALKHLLHVAVAQIFY-LDLPDH 124

Query: 125 VIISEYVCIAHDFFYGDEPKF---INAVLDKVSRKEE 158
             +   V  A+        K+   +NA+L +++R +E
Sbjct: 125 SAVDLAVEAAN--SDPRNRKYAGLVNALLRRLARNKE 159


>gi|299133157|ref|ZP_07026352.1| Fmu (Sun) domain protein [Afipia sp. 1NLS2]
 gi|298593294|gb|EFI53494.1| Fmu (Sun) domain protein [Afipia sp. 1NLS2]
          Length = 446

 Score = 44.7 bits (105), Expect = 0.004,   Method: Composition-based stats.
 Identities = 24/129 (18%), Positives = 44/129 (34%), Gaps = 14/129 (10%)

Query: 37  TTEIISEYETYRFCADTELDVESVYL------HVDLEWFRVIIHGVMDRKQHIDLLISSC 90
             +II      R   D +L+  + +         D    R ++  V+ R   +  L+S  
Sbjct: 21  AADIIDGVLHKRRTLDDQLEGPAAHPVLKTLSDRDRALMRRLVATVLRRLGTLGHLLSRL 80

Query: 91  LTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKF---IN 147
           L              S L  G  +++    VP    +   V +          K+   +N
Sbjct: 81  LDRGIPSD--APRAQSALLIGAAQILWM-DVPDHAAVDLSVRLVQA--DRRAAKYAGLVN 135

Query: 148 AVLDKVSRK 156
           AVL + +R+
Sbjct: 136 AVLRRCARE 144


>gi|242398901|ref|YP_002994325.1| TRNA/rRNA cytosine-C5-methylase, NOL1/NOP2/Sun family, fused to N-
           terminal NusB regulator domain [Thermococcus sibiricus
           MM 739]
 gi|242265294|gb|ACS89976.1| TRNA/rRNA cytosine-C5-methylase, NOL1/NOP2/Sun family, fused to N-
           terminal NusB regulator domain [Thermococcus sibiricus
           MM 739]
          Length = 450

 Score = 44.7 bits (105), Expect = 0.004,   Method: Composition-based stats.
 Identities = 30/119 (25%), Positives = 46/119 (38%), Gaps = 7/119 (5%)

Query: 37  TTEIISEYETYRFCADTELDVE-SVYLHVDLEWFRVIIHGVM----DRKQHIDLLISSCL 91
             +I+S  E     +   L+         D E  R + H  +      K+ ID  I + +
Sbjct: 13  IADILSLIEERELSSKNALERTFKRVRGKDRERARGLAHAYIFEIEKWKRKID-FIGNSV 71

Query: 92  TEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVL 150
            +      LD  L ++LR G+ E+     VP  +     V    D +     KFINAVL
Sbjct: 72  LKGIKIEELDPYLANLLRIGIFEMKFKGVVP-AIATDSIVRAVKDKYDLSRAKFINAVL 129


>gi|254719803|ref|ZP_05181614.1| Sun [Brucella sp. 83/13]
 gi|265984821|ref|ZP_06097556.1| fmu domain-containing protein [Brucella sp. 83/13]
 gi|306839499|ref|ZP_07472307.1| Sun [Brucella sp. NF 2653]
 gi|264663413|gb|EEZ33674.1| fmu domain-containing protein [Brucella sp. 83/13]
 gi|306405444|gb|EFM61715.1| Sun [Brucella sp. NF 2653]
          Length = 464

 Score = 44.7 bits (105), Expect = 0.004,   Method: Composition-based stats.
 Identities = 18/97 (18%), Positives = 37/97 (38%), Gaps = 8/97 (8%)

Query: 65  DLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVE 124
           D    R I+   +  +  I+  I+  L          + L  +L   V ++     +P  
Sbjct: 68  DRALVRAILGSALRNRGSIERAINKRLDR--PLPENAVALKHLLHVAVAQIFY-LDLPDH 124

Query: 125 VIISEYVCIAHDFFYGDEPKF---INAVLDKVSRKEE 158
             +   V  A+        K+   +NA+L +++R +E
Sbjct: 125 SAVDLAVEAAN--SDPRNRKYAGLVNALLRRLARNKE 159


>gi|261400037|ref|ZP_05986162.1| ribosomal RNA small subunit methyltransferase B [Neisseria
           lactamica ATCC 23970]
 gi|269210259|gb|EEZ76714.1| ribosomal RNA small subunit methyltransferase B [Neisseria
           lactamica ATCC 23970]
          Length = 419

 Score = 44.7 bits (105), Expect = 0.004,   Method: Composition-based stats.
 Identities = 25/126 (19%), Positives = 50/126 (39%), Gaps = 17/126 (13%)

Query: 34  GCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTE 93
           G +  +++++  T    A  +L  +      D+ +      G       +  +++  L +
Sbjct: 20  GRNLQDVLAQIRT----AHPDLTAQENGALQDIAY------GCQRYLGSLKHILAQMLKK 69

Query: 94  KWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVC-IAHDFFYGDEPKFINAVLDK 152
                  +  L S+L A + +L    + P  V+ +E V  IA     G    F NAVL +
Sbjct: 70  --PIG--NPQLESLLLAALYQLHYTRNAPHAVV-NEAVESIAKI-GRGQYRSFANAVLRR 123

Query: 153 VSRKEE 158
             R+ +
Sbjct: 124 FLRERD 129


>gi|332969155|gb|EGK08187.1| ribosomal RNA small subunit methyltransferase B [Kingella kingae
           ATCC 23330]
          Length = 418

 Score = 44.7 bits (105), Expect = 0.004,   Method: Composition-based stats.
 Identities = 17/101 (16%), Positives = 36/101 (35%), Gaps = 5/101 (4%)

Query: 58  ESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIE 117
                  D    + + +G       +  ++   L +       + +L + L   + +L  
Sbjct: 34  NPDLTAQDKGMLQDLAYGCQRFLGSLRYMLGKLLNK--PLD--NPLLEAHLLVAMYQLNH 89

Query: 118 CHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEE 158
             + P  V+ +E V        G    F NA+L +  R++E
Sbjct: 90  TKNAPHAVV-NEAVEYIGKMGRGQYRSFANAILRRFQREQE 129


>gi|323164853|gb|EFZ50644.1| ribosomal RNA small subunit methyltransferase B [Shigella sonnei
           53G]
          Length = 454

 Score = 44.7 bits (105), Expect = 0.004,   Method: Composition-based stats.
 Identities = 25/145 (17%), Positives = 53/145 (36%), Gaps = 16/145 (11%)

Query: 14  HRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVII 73
            ++   R  A QA+ Q+   G S + I+               ++      D    + + 
Sbjct: 27  EKQRNLRSMAAQAVEQVVEQGQSLSNIL-------------PPLQQKVSDKDKALLQELC 73

Query: 74  HGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCI 133
            GV+     +D LI+  +    +  +    +  ++  G+ +L+    +P    ++E V  
Sbjct: 74  FGVLRTLSQLDWLINKLMARPMTGKQ--RTVHYLIMVGLYQLLYTR-IPPHAALAETVEG 130

Query: 134 AHDFFYGDEPKFINAVLDKVSRKEE 158
           A           IN VL +   ++E
Sbjct: 131 AIAIKRPQLKGLINGVLRQFQHQQE 155


>gi|262166812|ref|ZP_06034549.1| ribosomal RNA small subunit methyltransferase B [Vibrio mimicus
           VM223]
 gi|262026528|gb|EEY45196.1| ribosomal RNA small subunit methyltransferase B [Vibrio mimicus
           VM223]
          Length = 426

 Score = 44.7 bits (105), Expect = 0.004,   Method: Composition-based stats.
 Identities = 32/139 (23%), Positives = 50/139 (35%), Gaps = 16/139 (11%)

Query: 20  RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79
           R AA  ALYQ+  +G S +  +                +      D    + I +GV+ +
Sbjct: 4   RAAAASALYQVVDLGQSLSNAL-------------PTAQQQIRPRDHALLQEICYGVLRQ 50

Query: 80  KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139
              +   IS  L EK        +   ++  G+ +L     +P    + E V  A D   
Sbjct: 51  LPRL-ESISQALMEK-PLKGKQRVFHFLILVGLYQLSFMR-IPAHAAVGETVEGAQDLKG 107

Query: 140 GDEPKFINAVLDKVSRKEE 158
                 INAVL    R +E
Sbjct: 108 PRLRGLINAVLRNYQRDQE 126


>gi|256830606|ref|YP_003159334.1| sun protein [Desulfomicrobium baculatum DSM 4028]
 gi|256579782|gb|ACU90918.1| sun protein [Desulfomicrobium baculatum DSM 4028]
          Length = 424

 Score = 44.7 bits (105), Expect = 0.004,   Method: Composition-based stats.
 Identities = 24/131 (18%), Positives = 43/131 (32%), Gaps = 15/131 (11%)

Query: 19  ARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMD 78
           AR  A+  L             +   +  +   D  L+   V    D      + +G + 
Sbjct: 6   ARRLALDIL----------RRTLDHKQDLQAAVDEVLNP--VQAGPDKGLATELAYGYLR 53

Query: 79  RKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFF 138
            +  ID L+S  L    +  +   I+  IL   + EL+    +P    +   V +  +  
Sbjct: 54  MRGRIDFLLSQLLK---NPVQTSPIMKRILGVAMYELLFLSRIPDYATLDWAVTLVRERL 110

Query: 139 YGDEPKFINAV 149
                K  N V
Sbjct: 111 DQTMGKVANGV 121


>gi|114767262|ref|ZP_01446112.1| ribosomal RNA small subunit methyltransferase B, putative
           [Pelagibaca bermudensis HTCC2601]
 gi|114540615|gb|EAU43687.1| ribosomal RNA small subunit methyltransferase B, putative
           [Roseovarius sp. HTCC2601]
          Length = 420

 Score = 44.7 bits (105), Expect = 0.004,   Method: Composition-based stats.
 Identities = 21/103 (20%), Positives = 37/103 (35%), Gaps = 8/103 (7%)

Query: 59  SVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIEC 118
                 D    + +   V+   +  D L+   L +          + ++LR G  EL   
Sbjct: 35  EAMPAPDRAAAQRMAQEVLRNLERCDRLLKPHLRKSPPL-----FVRNVLRLGAWEL-AT 88

Query: 119 HSVPVEVIISEYVCI-AHDFFYGDEPKFINAVLDKVSRKEEIK 160
                 V+ ++ V I A D         +NAVL K++ +   K
Sbjct: 89  GGAAHGVV-NDCVQIVAGDRKTQSMKGLVNAVLRKLTEEAPAK 130


>gi|308047743|ref|YP_003911309.1| 16S rRNA m(5)C-967 methyltransferase [Ferrimonas balearica DSM
           9799]
 gi|307629933|gb|ADN74235.1| 16S rRNA m(5)C-967 methyltransferase [Ferrimonas balearica DSM
           9799]
          Length = 441

 Score = 44.7 bits (105), Expect = 0.004,   Method: Composition-based stats.
 Identities = 22/105 (20%), Positives = 41/105 (39%), Gaps = 3/105 (2%)

Query: 65  DLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVE 124
           D      I +GVM +   +D  +  CL +    S    I+  +L AG+ +L     V   
Sbjct: 40  DKALLAEIAYGVMRQLPQLDTQLRRCLQK--PLSGKKRIIHGLLLAGLYQLKHTR-VGSH 96

Query: 125 VIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRSGCVSAIT 169
            +++E V    +         +N VL  + R  +  ++    A +
Sbjct: 97  AVVAESVNACREIGAPGMTGLVNGVLRALDRDMDALQAEQFDAPS 141


>gi|306844795|ref|ZP_07477380.1| Sun [Brucella sp. BO1]
 gi|306274967|gb|EFM56737.1| Sun [Brucella sp. BO1]
          Length = 465

 Score = 44.7 bits (105), Expect = 0.004,   Method: Composition-based stats.
 Identities = 18/97 (18%), Positives = 37/97 (38%), Gaps = 8/97 (8%)

Query: 65  DLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVE 124
           D    R I+   +  +  I+  I+  L          + L  +L   V ++     +P  
Sbjct: 69  DRALVRAILGSALRNRGSIERAINKRLDR--PLPENAVALKHLLHVAVAQIFY-LDLPDH 125

Query: 125 VIISEYVCIAHDFFYGDEPKF---INAVLDKVSRKEE 158
             +   V  A+        K+   +NA+L +++R +E
Sbjct: 126 SAVDLAVEAAN--SDPRNRKYAGLVNALLRRLARNKE 160


>gi|152972197|ref|YP_001337343.1| 16S rRNA methyltransferase B [Klebsiella pneumoniae subsp.
           pneumoniae MGH 78578]
 gi|224493256|sp|A6TEU2|RSMB_KLEP7 RecName: Full=Ribosomal RNA small subunit methyltransferase B;
           AltName: Full=16S rRNA m5C967 methyltransferase;
           AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
           rsmB
 gi|150957046|gb|ABR79076.1| 16S rRNA m5C967 methyltransferase [Klebsiella pneumoniae subsp.
           pneumoniae MGH 78578]
          Length = 431

 Score = 44.7 bits (105), Expect = 0.004,   Method: Composition-based stats.
 Identities = 25/140 (17%), Positives = 52/140 (37%), Gaps = 16/140 (11%)

Query: 20  RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79
           R  A QA+ Q+   G S + ++               ++      D    + +  GV+  
Sbjct: 8   RSLAAQAIEQVVEKGQSLSNVL-------------PPLQQKVSDKDKALLQELCFGVLRT 54

Query: 80  KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139
              ++ LIS  +    +  +    +  ++  G+ +L+    +P    ++E V  A     
Sbjct: 55  LSQLEWLISKLMARPMTGKQ--RTVHFLIMVGLYQLLYTR-IPPHAALAETVEGAVAIKR 111

Query: 140 GDEPKFINAVLDKVSRKEEI 159
                 IN VL +  R++E 
Sbjct: 112 PQLKGLINGVLRQFQRQQEA 131


>gi|296315160|ref|ZP_06865101.1| ribosomal RNA small subunit methyltransferase B [Neisseria
           polysaccharea ATCC 43768]
 gi|296837969|gb|EFH21907.1| ribosomal RNA small subunit methyltransferase B [Neisseria
           polysaccharea ATCC 43768]
          Length = 419

 Score = 44.7 bits (105), Expect = 0.005,   Method: Composition-based stats.
 Identities = 25/126 (19%), Positives = 50/126 (39%), Gaps = 17/126 (13%)

Query: 34  GCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTE 93
           G +  +++++  T    A  +L  +      D+ +      G       +  +++  L +
Sbjct: 20  GRNLQDVLAQIRT----AHPDLTAQENGALQDIAY------GCQRYLGSLKHMLAQMLKK 69

Query: 94  KWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVC-IAHDFFYGDEPKFINAVLDK 152
                  +  L S+L A + +L    + P  V+ +E V  IA     G    F NAVL +
Sbjct: 70  --PIG--NPQLESLLLAALYQLHYTRNAPHAVV-NEAVESIAKI-GRGQYRSFANAVLRR 123

Query: 153 VSRKEE 158
             R+ +
Sbjct: 124 FLRERD 129


>gi|262402050|ref|ZP_06078614.1| ribosomal RNA small subunit methyltransferase B [Vibrio sp. RC586]
 gi|262351696|gb|EEZ00828.1| ribosomal RNA small subunit methyltransferase B [Vibrio sp. RC586]
          Length = 426

 Score = 44.7 bits (105), Expect = 0.005,   Method: Composition-based stats.
 Identities = 31/139 (22%), Positives = 51/139 (36%), Gaps = 16/139 (11%)

Query: 20  RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79
           R AA  ALYQ+  +G S +  +                +      D    + I +GV+ +
Sbjct: 4   RAAAASALYQVVDLGQSLSNAL-------------PTAQQQIRPRDHALLQEICYGVLRQ 50

Query: 80  KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139
              +   IS  L EK        +   ++  G+ ++     +P    + E V  A D   
Sbjct: 51  LPRL-ESISQALMEK-PLKGKQRVFHFLILVGLYQISFMR-IPAHAAVGETVEGAQDLKG 107

Query: 140 GDEPKFINAVLDKVSRKEE 158
                 INAVL    R++E
Sbjct: 108 PRLRGLINAVLRNYQREQE 126


>gi|225853258|ref|YP_002733491.1| Fmu domain-containing protein, Sun [Brucella melitensis ATCC 23457]
 gi|256114379|ref|ZP_05455112.1| Fmu domain protein, Sun [Brucella melitensis bv. 3 str. Ether]
 gi|256263253|ref|ZP_05465785.1| NOL1/NOP2/sun family protein [Brucella melitensis bv. 2 str. 63/9]
 gi|265995679|ref|ZP_06108236.1| fmu domain-containing protein [Brucella melitensis bv. 3 str.
           Ether]
 gi|225641623|gb|ACO01537.1| Fmu domain protein, Sun [Brucella melitensis ATCC 23457]
 gi|262766963|gb|EEZ12581.1| fmu domain-containing protein [Brucella melitensis bv. 3 str.
           Ether]
 gi|263093217|gb|EEZ17314.1| NOL1/NOP2/sun family protein [Brucella melitensis bv. 2 str. 63/9]
 gi|326409818|gb|ADZ66883.1| Fmu domain-containing protein, Sun [Brucella melitensis M28]
 gi|326539536|gb|ADZ87751.1| Fmu domain protein, Sun [Brucella melitensis M5-90]
          Length = 465

 Score = 44.7 bits (105), Expect = 0.005,   Method: Composition-based stats.
 Identities = 28/162 (17%), Positives = 54/162 (33%), Gaps = 23/162 (14%)

Query: 2   TIQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVY 61
           T  ++  DL+       ARL A + L            +I +  +     D         
Sbjct: 17  TNSNSAADLRPGL---AARLCAARLL----------GAVIEKNTSLDGLTDNAHGHPQYL 63

Query: 62  L--HVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECH 119
                D    R I+   +  +  I+  I+  L          + L  +L   V ++    
Sbjct: 64  ALEPRDRALVRAILGSALHNRGSIERAINKRLDR--PLPENAVALKHLLHVAVAQIFY-L 120

Query: 120 SVPVEVIISEYVCIAHDFFYGDEPKF---INAVLDKVSRKEE 158
            +P    +   V  A+        K+   +NA+L +++R +E
Sbjct: 121 DLPDHSAVDLAVEAAN--SDPRNRKYAGLVNALLRRLARNKE 160


>gi|303245831|ref|ZP_07332113.1| Fmu (Sun) domain protein [Desulfovibrio fructosovorans JJ]
 gi|302492614|gb|EFL52482.1| Fmu (Sun) domain protein [Desulfovibrio fructosovorans JJ]
          Length = 451

 Score = 44.7 bits (105), Expect = 0.005,   Method: Composition-based stats.
 Identities = 15/96 (15%), Positives = 30/96 (31%), Gaps = 3/96 (3%)

Query: 59  SVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIEC 118
                 D      +++G +  +  +  L +  L        +   +  IL     E++ C
Sbjct: 51  PGLDPRDRGLATELVYGYLRLRGRMAFLCARFLKR---PDAVPAPVRRILELAAYEILFC 107

Query: 119 HSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVS 154
             VP    +   V               NAVL +++
Sbjct: 108 SKVPAYASVDWAVSAVRAKAGKGLSGMANAVLRRIA 143


>gi|163744097|ref|ZP_02151463.1| ribosomal RNA small subunit methyltransferase B, putative
           [Phaeobacter gallaeciensis 2.10]
 gi|161382644|gb|EDQ07047.1| ribosomal RNA small subunit methyltransferase B, putative
           [Phaeobacter gallaeciensis 2.10]
          Length = 443

 Score = 44.3 bits (104), Expect = 0.005,   Method: Composition-based stats.
 Identities = 26/150 (17%), Positives = 54/150 (36%), Gaps = 21/150 (14%)

Query: 8   KDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLE 67
           ++ ++S+    AR  A+  L           +++ E +    C              +  
Sbjct: 19  QEPRMSNA-TQARRRAIHLL----------DQVLGEGKLLSEC--YAAGALDKLPAEERA 65

Query: 68  WFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVII 127
             + +    +   +  D ++   L +          + + LR G +EL  C       ++
Sbjct: 66  RTQRLATDTLRNLERADRILQKHLKKATPL-----TVHNALRIGTVEL--CQGGAAHGVV 118

Query: 128 SEYVCI-AHDFFYGDEPKFINAVLDKVSRK 156
           +E V I A    +G     +NAVL KV+ +
Sbjct: 119 NEMVDIIARHRRHGKLKGLVNAVLRKVAEQ 148


>gi|256045414|ref|ZP_05448306.1| Fmu domain protein, Sun [Brucella melitensis bv. 1 str. Rev.1]
 gi|260565697|ref|ZP_05836180.1| conserved hypothetical protein [Brucella melitensis bv. 1 str. 16M]
 gi|265991841|ref|ZP_06104398.1| fmu domain-containing protein [Brucella melitensis bv. 1 str.
           Rev.1]
 gi|260151070|gb|EEW86165.1| conserved hypothetical protein [Brucella melitensis bv. 1 str. 16M]
 gi|263002797|gb|EEZ15200.1| fmu domain-containing protein [Brucella melitensis bv. 1 str.
           Rev.1]
          Length = 465

 Score = 44.3 bits (104), Expect = 0.005,   Method: Composition-based stats.
 Identities = 28/162 (17%), Positives = 54/162 (33%), Gaps = 23/162 (14%)

Query: 2   TIQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVY 61
           T  ++  DL+       ARL A + L            +I +  +     D         
Sbjct: 17  TNSNSAADLRPGL---AARLCAARLL----------GAVIEKNTSLDGLTDNAHGHPQYL 63

Query: 62  L--HVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECH 119
                D    R I+   +  +  I+  I+  L          + L  +L   V ++    
Sbjct: 64  ALEPRDRALVRAILGSALHNRGSIERAINKRLDR--PLPENAVALKHLLHVAVAQIFY-L 120

Query: 120 SVPVEVIISEYVCIAHDFFYGDEPKF---INAVLDKVSRKEE 158
            +P    +   V  A+        K+   +NA+L +++R +E
Sbjct: 121 DLPDHSAVDLAVEAAN--SDPRNRKYAGLVNALLRRLARNKE 160


>gi|319639525|ref|ZP_07994272.1| SUN protein [Neisseria mucosa C102]
 gi|317399096|gb|EFV79770.1| SUN protein [Neisseria mucosa C102]
          Length = 417

 Score = 44.3 bits (104), Expect = 0.005,   Method: Composition-based stats.
 Identities = 24/126 (19%), Positives = 48/126 (38%), Gaps = 17/126 (13%)

Query: 34  GCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTE 93
           G +  ++++E       A  +L  +      D+ +      G       +  ++   L +
Sbjct: 18  GRNLQDVLAEIR----VAHPQLTAQENGALQDIAY------GCQRYLGSLKHMLGQMLKK 67

Query: 94  KWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVC-IAHDFFYGDEPKFINAVLDK 152
                  +  L S+L A + +L    + P  V+ +E V  IA     G    F NA+L +
Sbjct: 68  --PID--NPQLESLLLAAMYQLHYTRNAPHAVV-NEAVESIAKI-GRGQFRSFANAILRR 121

Query: 153 VSRKEE 158
             R+ +
Sbjct: 122 FLRERD 127


>gi|298370615|ref|ZP_06981930.1| ribosomal RNA small subunit methyltransferase B [Neisseria sp. oral
           taxon 014 str. F0314]
 gi|298281225|gb|EFI22715.1| ribosomal RNA small subunit methyltransferase B [Neisseria sp. oral
           taxon 014 str. F0314]
          Length = 425

 Score = 44.3 bits (104), Expect = 0.005,   Method: Composition-based stats.
 Identities = 24/126 (19%), Positives = 48/126 (38%), Gaps = 17/126 (13%)

Query: 34  GCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTE 93
           G +  ++++        A  EL  +      D+ +      G       +  +++  L +
Sbjct: 18  GRNLQDVLAAIRA----AHPELTAQENGALQDIAY------GCQRYLGSLKHMLAQMLKK 67

Query: 94  KWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVC-IAHDFFYGDEPKFINAVLDK 152
                  +  L S+L A + +L    + P  V+ +E V  IA     G    F NA+L +
Sbjct: 68  --PID--NPQLESLLLAAMYQLHYTRNAPHAVV-NEAVESIAKI-GRGQFRSFANAILRR 121

Query: 153 VSRKEE 158
             R+ +
Sbjct: 122 FLRERQ 127


>gi|325131147|gb|EGC53868.1| ribosomal RNA small subunit methyltransferase B [Neisseria
           meningitidis OX99.30304]
 gi|325137171|gb|EGC59766.1| ribosomal RNA small subunit methyltransferase B [Neisseria
           meningitidis M0579]
 gi|325203053|gb|ADY98507.1| ribosomal RNA small subunit methyltransferase B [Neisseria
           meningitidis M01-240149]
 gi|325207149|gb|ADZ02601.1| ribosomal RNA small subunit methyltransferase B [Neisseria
           meningitidis NZ-05/33]
          Length = 419

 Score = 44.3 bits (104), Expect = 0.005,   Method: Composition-based stats.
 Identities = 25/126 (19%), Positives = 50/126 (39%), Gaps = 17/126 (13%)

Query: 34  GCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTE 93
           G +  +++++  T    A  +L  +      D+ +      G       +  +++  L +
Sbjct: 20  GRNLQDVLAQIRT----AHPDLMAQENGALQDIAY------GCQRYLGSLKHMLAQMLKK 69

Query: 94  KWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVC-IAHDFFYGDEPKFINAVLDK 152
                  +  L S+L A + +L    + P  V+ +E V  IA     G    F NAVL +
Sbjct: 70  --PIG--NPQLESLLLAALYQLHYTRNAPHAVV-NEAVESIAKI-GRGQYRSFANAVLRR 123

Query: 153 VSRKEE 158
             R+ +
Sbjct: 124 FLRERD 129


>gi|260168015|ref|ZP_05754826.1| sun protein [Brucella sp. F5/99]
 gi|261757460|ref|ZP_06001169.1| RNA methyltransferase- sun protein [Brucella sp. F5/99]
 gi|261737444|gb|EEY25440.1| RNA methyltransferase- sun protein [Brucella sp. F5/99]
          Length = 465

 Score = 44.3 bits (104), Expect = 0.005,   Method: Composition-based stats.
 Identities = 28/162 (17%), Positives = 54/162 (33%), Gaps = 23/162 (14%)

Query: 2   TIQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVY 61
           T  ++  DL+       ARL A + L            +I +  +     D         
Sbjct: 17  TNSNSAADLRPGL---AARLCAARLL----------GAVIEKNTSLDGLTDNAHGHPQYL 63

Query: 62  L--HVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECH 119
                D    R I+   +  +  I+  I+  L          + L  +L   V ++    
Sbjct: 64  ALEPRDRALVRAILGFALRNRGSIERAINKRLDR--PLPENAVALKHLLHVAVAQIFY-L 120

Query: 120 SVPVEVIISEYVCIAHDFFYGDEPKF---INAVLDKVSRKEE 158
            +P    +   V  A+        K+   +NA+L +++R +E
Sbjct: 121 DLPDHSAVDLAVEAAN--SDPRNRKYAGLVNALLRRLARNKE 160


>gi|15676040|ref|NP_273170.1| 16S RNA methyltransferase [Neisseria meningitidis MC58]
 gi|7225328|gb|AAF40571.1| 16S RNA methyltransferase [Neisseria meningitidis MC58]
 gi|316985958|gb|EFV64897.1| ribosomal RNA small subunit methyltransferase B [Neisseria
           meningitidis H44/76]
 gi|325141257|gb|EGC63756.1| ribosomal RNA small subunit methyltransferase B [Neisseria
           meningitidis CU385]
 gi|325199326|gb|ADY94781.1| ribosomal RNA small subunit methyltransferase B [Neisseria
           meningitidis H44/76]
          Length = 419

 Score = 44.3 bits (104), Expect = 0.006,   Method: Composition-based stats.
 Identities = 25/126 (19%), Positives = 50/126 (39%), Gaps = 17/126 (13%)

Query: 34  GCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTE 93
           G +  +++++  T    A  +L  +      D+ +      G       +  +++  L +
Sbjct: 20  GRNLQDVLAQIRT----AHPDLMAQENGALQDIAY------GCQRYLGSLKHMLAQMLKK 69

Query: 94  KWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVC-IAHDFFYGDEPKFINAVLDK 152
                  +  L S+L A + +L    + P  V+ +E V  IA     G    F NAVL +
Sbjct: 70  --PIG--NPQLESLLLAALYQLHYTRNAPHAVV-NEAVESIAKI-GRGQYRSFANAVLRR 123

Query: 153 VSRKEE 158
             R+ +
Sbjct: 124 FLRERD 129


>gi|159185402|ref|NP_355752.2| Sun protein [Agrobacterium tumefaciens str. C58]
 gi|159140651|gb|AAK88537.2| Sun protein [Agrobacterium tumefaciens str. C58]
          Length = 461

 Score = 44.3 bits (104), Expect = 0.006,   Method: Composition-based stats.
 Identities = 33/175 (18%), Positives = 63/175 (36%), Gaps = 35/175 (20%)

Query: 8   KDLKLSHRRG--------------IARLAAVQALYQIDIIGCSTTEIISEYETYRFCADT 53
           +  K +H RG               AR+AA + L            ++ +  +     D+
Sbjct: 13  RKPKPAHARGREDGPSSFEDKPGLAARIAATRIL----------AAVLEKKTSMDGMLDS 62

Query: 54  EL--DVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAG 111
           E    V       D    R +++  +     I+  +S  L       +    L  +L  G
Sbjct: 63  ENGNPVYRALSLADRALVRAVVNSALRHLPRIETALSMLLDG--PLPQGARSLHHVLVVG 120

Query: 112 VLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFI---NAVLDKVSRKE-EIKRS 162
             +++    VP    +   V  AH        +F+   NAVL ++ R++ EI+++
Sbjct: 121 AAQMLY-LDVPDHSAVDLAVEQAHR--DPRNRRFVKLVNAVLRRLGREKAEIEKA 172


>gi|195970119|ref|NP_387430.2| putative sun protein [Sinorhizobium meliloti 1021]
 gi|307302539|ref|ZP_07582296.1| Fmu (Sun) domain protein [Sinorhizobium meliloti BL225C]
 gi|187904238|emb|CAC47903.2| Hypothetical Sun protein [Sinorhizobium meliloti 1021]
 gi|306903209|gb|EFN33799.1| Fmu (Sun) domain protein [Sinorhizobium meliloti BL225C]
          Length = 470

 Score = 44.3 bits (104), Expect = 0.006,   Method: Composition-based stats.
 Identities = 26/133 (19%), Positives = 45/133 (33%), Gaps = 14/133 (10%)

Query: 35  CSTTEIISEYETYRFCADTELDVESVYL------HVDLEWFRVIIHGVMDRKQHIDLLIS 88
            +  +I++     +   D  LD E            D    R I++  +     I   I 
Sbjct: 41  QAAAKILAAVVDRKTPLDGMLDPERGNPAYRELSEADRALVRAILNSALRHLPRIRAAID 100

Query: 89  SCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKF--- 145
           S L            L  +L     +++    VP    +   V  A         +F   
Sbjct: 101 SLLQT--PLPEGARALEHVLTVAATQILY-LDVPDHSAVDLAVEQAQ--SDPRNRRFASL 155

Query: 146 INAVLDKVSRKEE 158
           +NAVL ++SR++E
Sbjct: 156 VNAVLRRLSREKE 168


>gi|125718645|ref|YP_001035778.1| rRNA methyltransferase RsmB [Streptococcus sanguinis SK36]
 gi|125498562|gb|ABN45228.1| RRNA methyltransferase RsmB, putative [Streptococcus sanguinis
           SK36]
          Length = 355

 Score = 44.3 bits (104), Expect = 0.006,   Method: Composition-based stats.
 Identities = 11/47 (23%), Positives = 22/47 (46%), Gaps = 1/47 (2%)

Query: 110 AGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRK 156
             + +++    +P    + E + IA     G   KF NA+L ++ R+
Sbjct: 2   LSLYQMLYLDKIPQHAAVHEAIEIAKIRKRG-SEKFANALLRRIERE 47


>gi|114775554|ref|ZP_01451122.1| Sun protein [Mariprofundus ferrooxydans PV-1]
 gi|114553665|gb|EAU56046.1| Sun protein [Mariprofundus ferrooxydans PV-1]
          Length = 404

 Score = 44.3 bits (104), Expect = 0.006,   Method: Composition-based stats.
 Identities = 23/133 (17%), Positives = 43/133 (32%), Gaps = 9/133 (6%)

Query: 30  IDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISS 89
           + +   +   +       R                       +++GV+ R   ++   S 
Sbjct: 1   MQVRKAAIESLADILVRQRKAEQAMERYGVRLDARGRGLLHELVYGVLRRFYSLEADYSR 60

Query: 90  CL-TEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINA 148
              ++    +R+       L  G  +L     VP    +SE V  A          F+NA
Sbjct: 61  FCRSKPDDTARMA------LLIGTYQLRYMR-VPAHAALSETVA-AVMQSNPKAGGFVNA 112

Query: 149 VLDKVSRKEEIKR 161
           VL +VS  E  ++
Sbjct: 113 VLRRVSEHEPPQK 125


>gi|153830135|ref|ZP_01982802.1| sun protein [Vibrio cholerae 623-39]
 gi|254225568|ref|ZP_04919177.1| sun protein [Vibrio cholerae V51]
 gi|254291095|ref|ZP_04961892.1| sun protein [Vibrio cholerae AM-19226]
 gi|125621888|gb|EAZ50213.1| sun protein [Vibrio cholerae V51]
 gi|148874399|gb|EDL72534.1| sun protein [Vibrio cholerae 623-39]
 gi|150422940|gb|EDN14890.1| sun protein [Vibrio cholerae AM-19226]
          Length = 434

 Score = 44.3 bits (104), Expect = 0.006,   Method: Composition-based stats.
 Identities = 32/139 (23%), Positives = 50/139 (35%), Gaps = 16/139 (11%)

Query: 20  RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79
           R AA  ALYQ+  +G S +  +                +      D    + I +GV+ +
Sbjct: 12  RAAAASALYQVVDLGHSLSNAL-------------PAAQQQIRPRDHALLQEICYGVLRQ 58

Query: 80  KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139
              +   IS  L EK        +   ++  G+ +L     +P    + E V  A D   
Sbjct: 59  LPRL-ESISQALMEK-PLKGKQRVFHFLILVGLYQLSFMR-IPAHAAVGETVEGAQDLKG 115

Query: 140 GDEPKFINAVLDKVSRKEE 158
                 INAVL    R +E
Sbjct: 116 PRLRGLINAVLRNYQRDQE 134


>gi|18977637|ref|NP_578994.1| nol1-nop2-sun family nucleolar protein II [Pyrococcus furiosus DSM
           3638]
 gi|18893359|gb|AAL81389.1| putative nucleolar protein II (nol1-nop2-sun family) [Pyrococcus
           furiosus DSM 3638]
          Length = 450

 Score = 44.3 bits (104), Expect = 0.006,   Method: Composition-based stats.
 Identities = 22/83 (26%), Positives = 36/83 (43%), Gaps = 2/83 (2%)

Query: 73  IHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVC 132
           +  +   +  ID +I+S L        LD  L ++LR GV E+      P  +     V 
Sbjct: 54  VFEIEKWRAKIDFIINSVL-RGSKVEDLDPYLANLLRIGVFEMKFKKINP-AIATDSIVR 111

Query: 133 IAHDFFYGDEPKFINAVLDKVSR 155
           +  + F     KF NA+L +V +
Sbjct: 112 VVKEKFDLTRAKFANAILREVEK 134


>gi|307316130|ref|ZP_07595574.1| Fmu (Sun) domain protein [Sinorhizobium meliloti AK83]
 gi|306897970|gb|EFN28712.1| Fmu (Sun) domain protein [Sinorhizobium meliloti AK83]
          Length = 470

 Score = 44.3 bits (104), Expect = 0.006,   Method: Composition-based stats.
 Identities = 26/133 (19%), Positives = 45/133 (33%), Gaps = 14/133 (10%)

Query: 35  CSTTEIISEYETYRFCADTELDVESVYL------HVDLEWFRVIIHGVMDRKQHIDLLIS 88
            +  +I++     +   D  LD E            D    R I++  +     I   I 
Sbjct: 41  QAAAKILAAVVDRKTPLDGMLDPERGNPAYRELSEADRALVRAILNSALRHLPRIRAAID 100

Query: 89  SCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKF--- 145
           S L            L  +L     +++    VP    +   V  A         +F   
Sbjct: 101 SLLQT--PLPEGARALEHVLTVAATQILY-LDVPDHSAVDLAVEQAQ--SDPRNRRFASL 155

Query: 146 INAVLDKVSRKEE 158
           +NAVL ++SR++E
Sbjct: 156 VNAVLRRLSREKE 168


>gi|313667408|ref|YP_004047692.1| SUN-family protein [Neisseria lactamica ST-640]
 gi|313004870|emb|CBN86296.1| SUN-family protein [Neisseria lactamica 020-06]
          Length = 419

 Score = 44.3 bits (104), Expect = 0.006,   Method: Composition-based stats.
 Identities = 23/119 (19%), Positives = 45/119 (37%), Gaps = 13/119 (10%)

Query: 41  ISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRL 100
           + +   +   A  +L  +      D+ +      G       +  +++  L +       
Sbjct: 23  LQDVLAHIRAAHPDLTAQENGALQDIAY------GCQRYLGSLKHMLAQMLKK--PIG-- 72

Query: 101 DMILCSILRAGVLELIECHSVPVEVIISEYVC-IAHDFFYGDEPKFINAVLDKVSRKEE 158
           +  L S+L A + +L    + P  V+ +E V  IA     G    F NAVL +  R+ +
Sbjct: 73  NPQLESLLLAALYQLHYTRNAPHAVV-NEAVESIAKI-GRGQYRSFANAVLRRFLRERD 129


>gi|83642941|ref|YP_431376.1| sun protein [Hahella chejuensis KCTC 2396]
 gi|83630984|gb|ABC26951.1| sun protein [Hahella chejuensis KCTC 2396]
          Length = 447

 Score = 44.3 bits (104), Expect = 0.006,   Method: Composition-based stats.
 Identities = 25/151 (16%), Positives = 49/151 (32%), Gaps = 23/151 (15%)

Query: 12  LSHRRGI-ARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFR 70
           +  R+ + AR AA + L              +  E  R                D  + +
Sbjct: 1   MKRRKTLSARAAAAKTL-------------RAVAEEGRSLTTAMAPALEQVEENDRSFLQ 47

Query: 71  VIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSI---LRAGVLELIECHSVPVEVII 127
            + +G       ++  +   L +      +      I   L +G+ +L      P  V I
Sbjct: 48  ALCYGACRHYLTLEHWLGQLLRQP-----IKAKERDIHFLLLSGLHQLAFMDK-PAHVSI 101

Query: 128 SEYVCIAHDFFYGDEPKFINAVLDKVSRKEE 158
           +E V +  +       K +N VL    R+++
Sbjct: 102 NETVNVTKELNKLWATKLVNGVLRSFQRRKD 132


>gi|153212957|ref|ZP_01948551.1| sun protein [Vibrio cholerae 1587]
 gi|153826427|ref|ZP_01979094.1| sun protein [Vibrio cholerae MZO-2]
 gi|124116183|gb|EAY35003.1| sun protein [Vibrio cholerae 1587]
 gi|149739813|gb|EDM54008.1| sun protein [Vibrio cholerae MZO-2]
          Length = 434

 Score = 44.3 bits (104), Expect = 0.006,   Method: Composition-based stats.
 Identities = 32/139 (23%), Positives = 50/139 (35%), Gaps = 16/139 (11%)

Query: 20  RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79
           R AA  ALYQ+  +G S +  +                +      D    + I +GV+ +
Sbjct: 12  RAAAASALYQVVDLGHSLSNAL-------------PAAQQQIRPRDHALLQEICYGVLRQ 58

Query: 80  KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139
              +   IS  L EK        +   ++  G+ +L     +P    + E V  A D   
Sbjct: 59  LPRL-ESISQALMEK-PLKGKQRVFHFLILVGLYQLSFMR-IPAHAAVGETVEGAQDLKG 115

Query: 140 GDEPKFINAVLDKVSRKEE 158
                 INAVL    R +E
Sbjct: 116 PRLRGLINAVLRNYQRDQE 134


>gi|294675830|ref|YP_003576445.1| ribosomal RNA small subunit methyltransferase B [Rhodobacter
           capsulatus SB 1003]
 gi|294474650|gb|ADE84038.1| ribosomal RNA small subunit methyltransferase B-1 [Rhodobacter
           capsulatus SB 1003]
          Length = 421

 Score = 44.3 bits (104), Expect = 0.006,   Method: Composition-based stats.
 Identities = 21/113 (18%), Positives = 34/113 (30%), Gaps = 10/113 (8%)

Query: 45  ETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMIL 104
              R     +    +     D    + I    +      D ++   L +          L
Sbjct: 19  LQERLTLAEQAGELAALAPPDRARAQRIALATLRNLTRADAMLKPHLRKAPPPD-----L 73

Query: 105 CSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKF---INAVLDKVS 154
             +LR G +E+      P  V     V +A          F   INAVL K++
Sbjct: 74  HVLLRLGTVEICALGEAPHGVT-DALVTLARS-GGQKTEGFAGLINAVLRKIA 124


>gi|261214774|ref|ZP_05929055.1| fmu domain-containing protein [Brucella abortus bv. 3 str. Tulya]
 gi|260916381|gb|EEX83242.1| fmu domain-containing protein [Brucella abortus bv. 3 str. Tulya]
          Length = 252

 Score = 44.3 bits (104), Expect = 0.006,   Method: Composition-based stats.
 Identities = 28/162 (17%), Positives = 54/162 (33%), Gaps = 23/162 (14%)

Query: 2   TIQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVY 61
           T  ++  DL+       ARL A + L            +I +  +     D         
Sbjct: 17  TNSNSAADLRPGL---AARLCAARLL----------GAVIEKNTSLDGLTDNAHGHPQYL 63

Query: 62  L--HVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECH 119
                D    R I+   +  +  I+  I+  L          + L  +L   V ++    
Sbjct: 64  ALEPRDRALVRAILGSALRNRGSIERAINKRLDR--PLPENAVALKHLLHVAVAQIFY-L 120

Query: 120 SVPVEVIISEYVCIAHDFFYGDEPKF---INAVLDKVSRKEE 158
            +P    +   V  A+        K+   +NA+L +++R +E
Sbjct: 121 DLPDHSAVDLAVEAAN--SDPRNRKYAGLVNALLRRLARNKE 160


>gi|254672816|emb|CBA06959.1| Sun protein [Neisseria meningitidis alpha275]
          Length = 419

 Score = 44.3 bits (104), Expect = 0.006,   Method: Composition-based stats.
 Identities = 25/126 (19%), Positives = 50/126 (39%), Gaps = 17/126 (13%)

Query: 34  GCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTE 93
           G +  +++++  T    A  +L  +      D+ +      G       +  +++  L +
Sbjct: 20  GRNLQDVLAQIRT----AHPDLMAQENGALQDIAY------GCQRYLGSLKHMLAQMLKK 69

Query: 94  KWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVC-IAHDFFYGDEPKFINAVLDK 152
                  +  L S+L A + +L    + P  V+ +E V  IA     G    F NAVL +
Sbjct: 70  --PIG--NPQLESLLLAALYQLHYTRNAPHAVV-NEAVESIAKI-GRGQYRSFANAVLRR 123

Query: 153 VSRKEE 158
             R+ +
Sbjct: 124 FLRERD 129


>gi|194443414|ref|YP_002042660.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
           serovar Newport str. SL254]
 gi|224493264|sp|B4SUR0|RSMB_SALNS RecName: Full=Ribosomal RNA small subunit methyltransferase B;
           AltName: Full=16S rRNA m5C967 methyltransferase;
           AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
           rsmB
 gi|194402077|gb|ACF62299.1| ribosomal RNA small subunit methyltransferase B [Salmonella
           enterica subsp. enterica serovar Newport str. SL254]
          Length = 429

 Score = 44.3 bits (104), Expect = 0.006,   Method: Composition-based stats.
 Identities = 20/130 (15%), Positives = 49/130 (37%), Gaps = 3/130 (2%)

Query: 29  QIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLIS 88
           Q ++   +   +    E  +  ++    ++      D    + +  GV+     ++ LI+
Sbjct: 4   QNNLRSLAAQAVEQVVEQGQSLSNVLPPLQQKVADKDKALLQELCFGVLRTLSQLEWLIN 63

Query: 89  SCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINA 148
             ++   +  +    +  ++  G  +L+    VP    ++E V  A           IN 
Sbjct: 64  KLMSRPMTGKQ--RTVHYLIMVGFYQLLYTR-VPPHAALAETVEGAVAIKRPQLKGLING 120

Query: 149 VLDKVSRKEE 158
           VL +  R++E
Sbjct: 121 VLRQFQRQQE 130


>gi|262191295|ref|ZP_06049489.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholerae CT
           5369-93]
 gi|262032833|gb|EEY51377.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholerae CT
           5369-93]
          Length = 426

 Score = 44.3 bits (104), Expect = 0.006,   Method: Composition-based stats.
 Identities = 32/139 (23%), Positives = 50/139 (35%), Gaps = 16/139 (11%)

Query: 20  RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79
           R AA  ALYQ+  +G S +  +                +      D    + I +GV+ +
Sbjct: 4   RAAAASALYQVVDLGHSLSNAL-------------PAAQQQIRPRDHALLQEICYGVLRQ 50

Query: 80  KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139
              +   IS  L EK        +   ++  G+ +L     +P    + E V  A D   
Sbjct: 51  LPRL-ESISQALMEK-PLKGKQRVFHFLILVGLYQLSFMR-IPAHAAVGETVEGAQDLKG 107

Query: 140 GDEPKFINAVLDKVSRKEE 158
                 INAVL    R +E
Sbjct: 108 PRLRGLINAVLRNYQRDQE 126


>gi|75674355|ref|YP_316776.1| tRNA and rRNA cytosine-C5-methylase [Nitrobacter winogradskyi
           Nb-255]
 gi|74419225|gb|ABA03424.1| tRNA and rRNA cytosine-C5-methylase [Nitrobacter winogradskyi
           Nb-255]
          Length = 450

 Score = 43.9 bits (103), Expect = 0.006,   Method: Composition-based stats.
 Identities = 22/131 (16%), Positives = 45/131 (34%), Gaps = 14/131 (10%)

Query: 37  TTEIISEYETYRFCADTELDVESVYL------HVDLEWFRVIIHGVMDRKQHIDLLISSC 90
             +I+      R   D +L+  + +         D    R ++  ++ R   +  L+S  
Sbjct: 21  AADILDGVLHKRRTLDEQLEGPTAHPGLKALADRDRALMRRLVATILRRLGTLGHLLSRL 80

Query: 91  LTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKF---IN 147
           L              S L  G  +++    VP    +   V +          K+   +N
Sbjct: 81  LDRGIPTD--APRAQSALLIGAAQILWM-DVPDHAAVDLSVRLVQ--SDRRAAKYAGLVN 135

Query: 148 AVLDKVSRKEE 158
           AVL + +R+ +
Sbjct: 136 AVLRRCAREGQ 146


>gi|168234465|ref|ZP_02659523.1| ribosomal RNA small subunit methyltransferase B [Salmonella
           enterica subsp. enterica serovar Kentucky str. CDC 191]
 gi|194470953|ref|ZP_03076937.1| ribosomal RNA small subunit methyltransferase B [Salmonella
           enterica subsp. enterica serovar Kentucky str. CVM29188]
 gi|194457317|gb|EDX46156.1| ribosomal RNA small subunit methyltransferase B [Salmonella
           enterica subsp. enterica serovar Kentucky str. CVM29188]
 gi|205331616|gb|EDZ18380.1| ribosomal RNA small subunit methyltransferase B [Salmonella
           enterica subsp. enterica serovar Kentucky str. CDC 191]
          Length = 429

 Score = 43.9 bits (103), Expect = 0.007,   Method: Composition-based stats.
 Identities = 20/130 (15%), Positives = 49/130 (37%), Gaps = 3/130 (2%)

Query: 29  QIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLIS 88
           Q ++   +   +    E  +  ++    ++      D    + +  GV+     ++ LI+
Sbjct: 4   QNNLRSLAAQAVEQVVEQGQSLSNVLPPLQQKVADKDKALLQELCFGVLRTLSQLEWLIN 63

Query: 89  SCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINA 148
             ++   +  +    +  ++  G  +L+    VP    ++E V  A           IN 
Sbjct: 64  KLMSRPMTGKQ--RTVHYLIMVGFYQLLYTR-VPPHAALAETVEGAVAIKRPQLKGLING 120

Query: 149 VLDKVSRKEE 158
           VL +  R++E
Sbjct: 121 VLRQFQRQQE 130


>gi|229515917|ref|ZP_04405374.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholerae
           TMA 21]
 gi|229524946|ref|ZP_04414351.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholerae
           bv. albensis VL426]
 gi|229338527|gb|EEO03544.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholerae
           bv. albensis VL426]
 gi|229347017|gb|EEO11979.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholerae
           TMA 21]
          Length = 426

 Score = 43.9 bits (103), Expect = 0.007,   Method: Composition-based stats.
 Identities = 32/139 (23%), Positives = 50/139 (35%), Gaps = 16/139 (11%)

Query: 20  RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79
           R AA  ALYQ+  +G S +  +                +      D    + I +GV+ +
Sbjct: 4   RAAAASALYQVVDLGHSLSNAL-------------PAAQQQIRPRDHALLQEICYGVLRQ 50

Query: 80  KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139
              +   IS  L EK        +   ++  G+ +L     +P    + E V  A D   
Sbjct: 51  LPRL-ESISQALMEK-PLKGKQRVFHFLILVGLYQLSFMR-IPAHAAVGETVEGAQDLKG 107

Query: 140 GDEPKFINAVLDKVSRKEE 158
                 INAVL    R +E
Sbjct: 108 PRLRGLINAVLRNYQRDQE 126


>gi|220933384|ref|YP_002512283.1| sun protein [Thioalkalivibrio sp. HL-EbGR7]
 gi|219994694|gb|ACL71296.1| sun protein [Thioalkalivibrio sp. HL-EbGR7]
          Length = 432

 Score = 43.9 bits (103), Expect = 0.007,   Method: Composition-based stats.
 Identities = 23/140 (16%), Positives = 51/140 (36%), Gaps = 16/140 (11%)

Query: 20  RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79
           R   ++AL ++ I G S ++++               + +     D  + + +    +  
Sbjct: 4   RQITLKALKRVVINGASLSDVL-------------PPLLAPLAPRDRAFAQALAFATLRW 50

Query: 80  KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139
              ++ L    L++       D  +  ++  G+ EL+     P    I E   +A     
Sbjct: 51  HHRLEALTGRLLSK--PMRDKDRDVGLVIEMGLCELLYLR-TPDYAAIQETAGLAKSLGK 107

Query: 140 GDEPKFINAVLDKVSRKEEI 159
                 +NAVL +V R+ + 
Sbjct: 108 PWATGVVNAVLRRVQREGDA 127


>gi|168239759|ref|ZP_02664817.1| ribosomal RNA small subunit methyltransferase B [Salmonella
           enterica subsp. enterica serovar Schwarzengrund str.
           SL480]
 gi|194736151|ref|YP_002116352.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
           serovar Schwarzengrund str. CVM19633]
 gi|224493267|sp|B4TXB2|RSMB_SALSV RecName: Full=Ribosomal RNA small subunit methyltransferase B;
           AltName: Full=16S rRNA m5C967 methyltransferase;
           AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
           rsmB
 gi|194711653|gb|ACF90874.1| ribosomal RNA small subunit methyltransferase B [Salmonella
           enterica subsp. enterica serovar Schwarzengrund str.
           CVM19633]
 gi|197287575|gb|EDY26967.1| ribosomal RNA small subunit methyltransferase B [Salmonella
           enterica subsp. enterica serovar Schwarzengrund str.
           SL480]
          Length = 429

 Score = 43.9 bits (103), Expect = 0.007,   Method: Composition-based stats.
 Identities = 20/130 (15%), Positives = 49/130 (37%), Gaps = 3/130 (2%)

Query: 29  QIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLIS 88
           Q ++   +   +    E  +  ++    ++      D    + +  GV+     ++ LI+
Sbjct: 4   QNNLRSLAAQAVEQVVEQGQSLSNVLPPLQQKVADKDKALLQELCFGVLRTLSQLEWLIN 63

Query: 89  SCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINA 148
             ++   +  +    +  ++  G  +L+    VP    ++E V  A           IN 
Sbjct: 64  KLMSRPMTGKQ--RTVHYLIMVGFYQLLYTR-VPPHAALAETVEGAVAIKRPQLKGLING 120

Query: 149 VLDKVSRKEE 158
           VL +  R++E
Sbjct: 121 VLRQFQRQQE 130


>gi|297626327|ref|YP_003688090.1| Sun, tRNA and rRNA cytosine-C5-methylases [Propionibacterium
           freudenreichii subsp. shermanii CIRM-BIA1]
 gi|296922092|emb|CBL56660.1| Sun, tRNA and rRNA cytosine-C5-methylases [Propionibacterium
           freudenreichii subsp. shermanii CIRM-BIA1]
          Length = 439

 Score = 43.9 bits (103), Expect = 0.007,   Method: Composition-based stats.
 Identities = 21/128 (16%), Positives = 43/128 (33%), Gaps = 6/128 (4%)

Query: 30  IDIIGCSTTEIISEYE---TYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLL 86
           +D    +  EI+ E +    Y   A  +   +      D  +   + +G        D +
Sbjct: 1   MDRPRRTAFEILREVDRRGAYANLATRQAINDQELTGRDAAFVTELAYGTCRMLGTYDAI 60

Query: 87  ISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFI 146
           ++         + L   +   LR G  +L+    +P    +   V +A            
Sbjct: 61  LAQA--SGRDLNDLQPDIVDALRLGAHQLLGMR-IPDRAAVDTTVDLAAIVVGERVAGLA 117

Query: 147 NAVLDKVS 154
           NA++ KV+
Sbjct: 118 NAIMRKVA 125


>gi|218767200|ref|YP_002341712.1| SUN homolog [Neisseria meningitidis Z2491]
 gi|121051208|emb|CAM07479.1| SUN homolog [Neisseria meningitidis Z2491]
 gi|319411405|emb|CBY91816.1| ribosomal RNA small subunit methyltransferase B (rRNA
           (cytosine-C(5)-)-methyltransferase; 16S rRNA m5C967
           methyltransferase) [Neisseria meningitidis WUE 2594]
          Length = 419

 Score = 43.9 bits (103), Expect = 0.007,   Method: Composition-based stats.
 Identities = 24/126 (19%), Positives = 50/126 (39%), Gaps = 17/126 (13%)

Query: 34  GCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTE 93
           G +  +++++  T    A  +L  +      D+ +      G       +  +++  L +
Sbjct: 20  GRNLQDVLAQIRT----AHPDLTAQENGALQDIAY------GCQRYLGSLKHMLAQMLKK 69

Query: 94  KWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVC-IAHDFFYGDEPKFINAVLDK 152
                  +  L S+L A + +L    + P  V+ +E V  IA     G    F NA+L +
Sbjct: 70  --PIG--NPQLESLLLAALYQLHYTRNAPHAVV-NEAVESIAKI-GRGQYRSFANAILRR 123

Query: 153 VSRKEE 158
             R+ +
Sbjct: 124 FLRERD 129


>gi|26249873|ref|NP_755913.1| 16S rRNA methyltransferase B [Escherichia coli CFT073]
 gi|227883420|ref|ZP_04001225.1| 16S rRNA methyltransferase B [Escherichia coli 83972]
 gi|300979825|ref|ZP_07174727.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
           MS 45-1]
 gi|301046059|ref|ZP_07193238.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
           MS 185-1]
 gi|46396925|sp|Q8FD12|RSMB_ECOL6 RecName: Full=Ribosomal RNA small subunit methyltransferase B;
           AltName: Full=16S rRNA m5C967 methyltransferase;
           AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
           rsmB
 gi|26110301|gb|AAN82487.1|AE016767_247 SUN protein [Escherichia coli CFT073]
 gi|227839564|gb|EEJ50030.1| 16S rRNA methyltransferase B [Escherichia coli 83972]
 gi|300301944|gb|EFJ58329.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
           MS 185-1]
 gi|300409431|gb|EFJ92969.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
           MS 45-1]
 gi|307555376|gb|ADN48151.1| 16S rRNA m5C967 methyltransferase [Escherichia coli ABU 83972]
 gi|315292336|gb|EFU51688.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
           MS 153-1]
          Length = 429

 Score = 43.9 bits (103), Expect = 0.007,   Method: Composition-based stats.
 Identities = 26/147 (17%), Positives = 55/147 (37%), Gaps = 17/147 (11%)

Query: 12  LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71
           +  +R + R  A QA+ Q+   G S + I+               ++      D    + 
Sbjct: 1   MKKQRNL-RSMAAQAIEQVVEQGQSLSNIL-------------PPLQQKVSDKDKALLQE 46

Query: 72  IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
           +  GV+      D LI+  +    +  +    +  ++  G+ +L+    +P    ++E V
Sbjct: 47  LCFGVLRTLSQSDWLINKLMARPMTGKQ--RTVHYLIMVGLYQLLYTR-IPPHAALAETV 103

Query: 132 CIAHDFFYGDEPKFINAVLDKVSRKEE 158
             A           IN VL +  R+++
Sbjct: 104 EGAVAIKRPQLKGLINGVLRQFQRQQD 130


>gi|238021729|ref|ZP_04602155.1| hypothetical protein GCWU000324_01632 [Kingella oralis ATCC 51147]
 gi|237866343|gb|EEP67385.1| hypothetical protein GCWU000324_01632 [Kingella oralis ATCC 51147]
          Length = 418

 Score = 43.9 bits (103), Expect = 0.007,   Method: Composition-based stats.
 Identities = 25/136 (18%), Positives = 53/136 (38%), Gaps = 13/136 (9%)

Query: 24  VQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHI 83
           VQ L    +   ++ + +S+   +    + EL  +   +  D+ +      G       +
Sbjct: 6   VQTLAAQTLAAVASGKNLSDELAHIIAQNPELTAQDKGMLQDIAY------GCQRHLGSL 59

Query: 84  DLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVC-IAHDFFYGDE 142
             ++   L +       +  L S L   + +L    + P  V+ +E V  IA    +G  
Sbjct: 60  KFMLGKMLNK--PID--NEALQSYLLVALYQLNHTQNAPHAVV-NEAVNHIA-QIGHGQY 113

Query: 143 PKFINAVLDKVSRKEE 158
             F NA+L +  R+++
Sbjct: 114 RSFANAILRRFLREKD 129


>gi|17986519|ref|NP_539153.1| 16S rRNA m(5)C 967 methyltransferase [Brucella melitensis bv. 1
           str. 16M]
 gi|17982123|gb|AAL51417.1| 16S rRNA m(5)c 967 methyltransferase [Brucella melitensis bv. 1
           str. 16M]
          Length = 424

 Score = 43.9 bits (103), Expect = 0.007,   Method: Composition-based stats.
 Identities = 18/97 (18%), Positives = 37/97 (38%), Gaps = 8/97 (8%)

Query: 65  DLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVE 124
           D    R I+   +  +  I+  I+  L          + L  +L   V ++     +P  
Sbjct: 28  DRALVRAILGSALHNRGSIERAINKRLDR--PLPENAVALKHLLHVAVAQIFY-LDLPDH 84

Query: 125 VIISEYVCIAHDFFYGDEPKF---INAVLDKVSRKEE 158
             +   V  A+        K+   +NA+L +++R +E
Sbjct: 85  SAVDLAVEAAN--SDPRNRKYAGLVNALLRRLARNKE 119


>gi|290512100|ref|ZP_06551468.1| ribosomal RNA small subunit methyltransferase B [Klebsiella sp.
           1_1_55]
 gi|289775890|gb|EFD83890.1| ribosomal RNA small subunit methyltransferase B [Klebsiella sp.
           1_1_55]
          Length = 431

 Score = 43.9 bits (103), Expect = 0.007,   Method: Composition-based stats.
 Identities = 24/140 (17%), Positives = 52/140 (37%), Gaps = 16/140 (11%)

Query: 20  RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79
           R  A QA+ Q+   G S + ++               ++      D    + +  GV+  
Sbjct: 8   RSLAAQAIEQVVEQGQSLSNVL-------------PPLQQKVSDKDKALLQELCFGVLRT 54

Query: 80  KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139
              ++ LI+  +    +  +    +  ++  G+ +L+    +P    ++E V  A     
Sbjct: 55  LSQLEWLINKLMARPMTGKQ--RTVHFLIMVGLYQLLYTR-IPPHAALAETVEGAVAIKR 111

Query: 140 GDEPKFINAVLDKVSRKEEI 159
                 IN VL +  R++E 
Sbjct: 112 PQLKGLINGVLRQFQRQQEA 131


>gi|229530170|ref|ZP_04419559.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholerae
           12129(1)]
 gi|229332303|gb|EEN97790.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholerae
           12129(1)]
 gi|327482955|gb|AEA77362.1| Ribosomal RNA small subunit methyltransferase B [Vibrio cholerae
           LMA3894-4]
          Length = 426

 Score = 43.9 bits (103), Expect = 0.007,   Method: Composition-based stats.
 Identities = 32/139 (23%), Positives = 50/139 (35%), Gaps = 16/139 (11%)

Query: 20  RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79
           R AA  ALYQ+  +G S +  +                +      D    + I +GV+ +
Sbjct: 4   RAAAASALYQVVDLGHSLSNAL-------------PAAQQQIRPRDHALLQEICYGVLRQ 50

Query: 80  KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139
              +   IS  L EK        +   ++  G+ +L     +P    + E V  A D   
Sbjct: 51  LPRL-ESISQALMEK-PLKGKQRVFHFLILVGLYQLSFMR-IPAHAAVGETVEGAQDLQG 107

Query: 140 GDEPKFINAVLDKVSRKEE 158
                 INAVL    R +E
Sbjct: 108 PRLRGLINAVLRNYQRDQE 126


>gi|218691575|ref|YP_002399787.1| 16S rRNA methyltransferase B [Escherichia coli ED1a]
 gi|254766857|sp|B7N0S9|RSMB_ECO81 RecName: Full=Ribosomal RNA small subunit methyltransferase B;
           AltName: Full=16S rRNA m5C967 methyltransferase;
           AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
           rsmB
 gi|218429139|emb|CAR09947.1| 16S rRNA m5C967 methyltransferase,
           S-adenosyl-L-methionine-dependent [Escherichia coli
           ED1a]
          Length = 429

 Score = 43.9 bits (103), Expect = 0.007,   Method: Composition-based stats.
 Identities = 25/147 (17%), Positives = 56/147 (38%), Gaps = 17/147 (11%)

Query: 12  LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71
           +  +R + R  A QA+ Q+   G S + I+               ++      D    + 
Sbjct: 1   MKKQRNL-RSMAAQAIEQVVEQGQSLSNIL-------------PPLQQKVSDKDKALLQE 46

Query: 72  IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
           +  GV+     ++ LI+  +    +  +    +  ++  G+ +L+    +P    ++E V
Sbjct: 47  LCFGVLRTLSQLEWLINKLMARPMTGKQ--RTVHYLIMVGLYQLLYTR-IPPHAALAETV 103

Query: 132 CIAHDFFYGDEPKFINAVLDKVSRKEE 158
             A           IN VL +  R+++
Sbjct: 104 EGAVAIKRPQLKGLINGVLRQFQRQQD 130


>gi|20095011|ref|NP_614858.1| tRNA/rRNA cytosine-C5-methylase [Methanopyrus kandleri AV19]
 gi|19888274|gb|AAM02788.1| tRNA/rRNA cytosine-C5-methylase [Methanopyrus kandleri AV19]
          Length = 431

 Score = 43.9 bits (103), Expect = 0.007,   Method: Composition-based stats.
 Identities = 19/89 (21%), Positives = 37/89 (41%), Gaps = 2/89 (2%)

Query: 67  EWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVI 126
            + + + H ++    ++DL+++  L    +   L   L + LR G  E+      P  V 
Sbjct: 25  RFVQALAHELVRVLGNVDLVLNRVL-RGSTVEDLHPYLRNALRVGTWEIHWRREHPGPVT 83

Query: 127 ISEYVCIAHDFFYGDEPKFINAVLDKVSR 155
               V +  +       +F NA+L +V R
Sbjct: 84  -KAVVDVVKERVGPKHARFANAILRQVER 111


>gi|163869265|ref|YP_001610521.1| SUN-family protein [Bartonella tribocorum CIP 105476]
 gi|161018968|emb|CAK02526.1| SUN-family protein [Bartonella tribocorum CIP 105476]
          Length = 454

 Score = 43.9 bits (103), Expect = 0.007,   Method: Composition-based stats.
 Identities = 25/128 (19%), Positives = 42/128 (32%), Gaps = 10/128 (7%)

Query: 40  IISEYETYRFCADTELDVESVY--LHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSF 97
           ++  Y       D E            D    R I+   +  +  I   +S  L      
Sbjct: 30  VVDRYTPLSGLTDNEHGHPQYLKLSQRDRLLCRAILTTSLRHRGQITAALSCFLERPLPS 89

Query: 98  SRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKF---INAVLDKVS 154
             L   L  +L   V +++    +P    I   V +A   F     +F   +NA+L  V+
Sbjct: 90  QALS--LQHLLHISVAQILY-LDIPDHAAIDLAVRVAK--FDPRMRRFSGVVNALLRNVA 144

Query: 155 RKEEIKRS 162
           R+    R 
Sbjct: 145 REAAPLRQ 152


>gi|294660497|ref|NP_853291.2| putative transcription termination factor N utilization substance
           protein B [Mycoplasma gallisepticum str. R(low)]
 gi|284812158|gb|AAP56859.2| putative transcription termination factor N utilization substance
           protein B (NusB) [Mycoplasma gallisepticum str. R(low)]
 gi|284930777|gb|ADC30716.1| putative transcription termination factor N utilization substance
           protein B (NusB) [Mycoplasma gallisepticum str. R(high)]
 gi|284931318|gb|ADC31256.1| putative transcription termination factor N utilization substance
           protein B (NusB) [Mycoplasma gallisepticum str. F]
          Length = 130

 Score = 43.9 bits (103), Expect = 0.007,   Method: Composition-based stats.
 Identities = 25/127 (19%), Positives = 54/127 (42%), Gaps = 18/127 (14%)

Query: 27  LYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLL 86
           +YQ  ++  +  EI           D E              F     G++++   I   
Sbjct: 21  IYQALLLDLNLDEIYQAISQLEDLKDQE--------------FLTNWTGLINQVPTI--- 63

Query: 87  ISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFI 146
           +S+ L E WS++RLD ++ ++    + E  +       ++IS+   +  ++   +  K +
Sbjct: 64  VSAHLKESWSWNRLDYMIKALFNLVITE-AKVLKTEKAILISQATKLIQEYGDLNSIKLV 122

Query: 147 NAVLDKV 153
           +A+L+KV
Sbjct: 123 SAILNKV 129


>gi|296269348|ref|YP_003651980.1| Fmu (Sun) domain-containing protein [Thermobispora bispora DSM
           43833]
 gi|296092135|gb|ADG88087.1| Fmu (Sun) domain protein [Thermobispora bispora DSM 43833]
          Length = 465

 Score = 43.9 bits (103), Expect = 0.008,   Method: Composition-based stats.
 Identities = 26/137 (18%), Positives = 47/137 (34%), Gaps = 14/137 (10%)

Query: 18  IARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVM 77
            AR+AA   L             + E + Y       L  +      +      + +G +
Sbjct: 29  EARIAAYDLL-----------RAVDERDAYANLLMPTLLRQRKITGREAALATELAYGTL 77

Query: 78  DRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDF 137
                 D +I +C     +   LD  L   +R G  +L+    +P    +S  + +    
Sbjct: 78  RGLGTYDEIIGACGDR--APGELDPPLRDAIRLGAHQLL-RTRIPAHAAVSSTIDLIRLR 134

Query: 138 FYGDEPKFINAVLDKVS 154
                 ++ NAVL KV+
Sbjct: 135 VGPGPSRYANAVLRKVA 151


>gi|16766697|ref|NP_462312.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
           serovar Typhimurium str. LT2]
 gi|167995183|ref|ZP_02576273.1| ribosomal RNA small subunit methyltransferase B [Salmonella
           enterica subsp. enterica serovar 4,[5],12:i:- str.
           CVM23701]
 gi|46396986|sp|Q8ZLM5|RSMB_SALTY RecName: Full=Ribosomal RNA small subunit methyltransferase B;
           AltName: Full=16S rRNA m5C967 methyltransferase;
           AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
           rsmB
 gi|16421964|gb|AAL22271.1| putative rRNA methylase [Salmonella enterica subsp. enterica
           serovar Typhimurium str. LT2]
 gi|205327090|gb|EDZ13854.1| ribosomal RNA small subunit methyltransferase B [Salmonella
           enterica subsp. enterica serovar 4,[5],12:i:- str.
           CVM23701]
 gi|261248565|emb|CBG26403.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
           serovar Typhimurium str. D23580]
 gi|267995617|gb|ACY90502.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
           serovar Typhimurium str. 14028S]
 gi|301159951|emb|CBW19470.1| 16S rRNA methyltransferase [Salmonella enterica subsp. enterica
           serovar Typhimurium str. SL1344]
 gi|312914431|dbj|BAJ38405.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
           serovar Typhimurium str. T000240]
 gi|321226460|gb|EFX51510.1| Ribosomal RNA small subunit methyltransferase B [Salmonella
           enterica subsp. enterica serovar Typhimurium str.
           TN061786]
 gi|323131766|gb|ADX19196.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
           serovar Typhimurium str. 4/74]
 gi|332990260|gb|AEF09243.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
           serovar Typhimurium str. UK-1]
          Length = 429

 Score = 43.9 bits (103), Expect = 0.008,   Method: Composition-based stats.
 Identities = 20/130 (15%), Positives = 49/130 (37%), Gaps = 3/130 (2%)

Query: 29  QIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLIS 88
           Q ++   +   +    E  +  ++    ++      D    + +  GV+     ++ LI+
Sbjct: 4   QNNLRSLAAQAVEQVVEQGQSLSNVLPPLQQKVADKDKALLQELCFGVLRTLSQLEWLIN 63

Query: 89  SCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINA 148
             ++   +  +    +  ++  G  +L+    VP    ++E V  A           IN 
Sbjct: 64  KLMSRPMTGKQ--RTVHYLIMVGFYQLLYTR-VPPHAALAETVEGAVSIKRPQLKGLING 120

Query: 149 VLDKVSRKEE 158
           VL +  R++E
Sbjct: 121 VLRQFQRQQE 130


>gi|328950801|ref|YP_004368136.1| NusB/RsmB/TIM44 [Marinithermus hydrothermalis DSM 14884]
 gi|328451125|gb|AEB12026.1| NusB/RsmB/TIM44 [Marinithermus hydrothermalis DSM 14884]
          Length = 417

 Score = 43.9 bits (103), Expect = 0.008,   Method: Composition-based stats.
 Identities = 20/100 (20%), Positives = 36/100 (36%), Gaps = 5/100 (5%)

Query: 58  ESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIE 117
            +     D      + +G +   +++D L++  L        L   +   LRAG  E + 
Sbjct: 42  NTRLSPEDRGLATHLTYGTLRHLRYLDHLLAPHLNA---PHHLPPPVRWALRAGAYERLF 98

Query: 118 CHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKE 157
                  V+ S +V               NAVL +V+ +E
Sbjct: 99  LEHPAYAVVHS-WVEETKR-RAPRLAGLTNAVLRRVTHRE 136


>gi|238913877|ref|ZP_04657714.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
           serovar Tennessee str. CDC07-0191]
          Length = 429

 Score = 43.9 bits (103), Expect = 0.008,   Method: Composition-based stats.
 Identities = 20/130 (15%), Positives = 49/130 (37%), Gaps = 3/130 (2%)

Query: 29  QIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLIS 88
           Q ++   +   +    E  +  ++    ++      D    + +  GV+     ++ LI+
Sbjct: 4   QNNLRSLAAQAVEQVVEQGQSLSNVLPPLQQKVADKDKALLQELCFGVLRTLSQLEWLIN 63

Query: 89  SCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINA 148
             ++   +  +    +  ++  G  +L+    VP    ++E V  A           IN 
Sbjct: 64  KLMSRPMTGKQ--RTVHYLIMVGFYQLLYTR-VPPHAALAETVEGAVSIKRPQLKGLING 120

Query: 149 VLDKVSRKEE 158
           VL +  R++E
Sbjct: 121 VLRQFQRQQE 130


>gi|168245235|ref|ZP_02670167.1| ribosomal RNA small subunit methyltransferase B [Salmonella
           enterica subsp. enterica serovar Heidelberg str. SL486]
 gi|168468035|ref|ZP_02701872.1| ribosomal RNA small subunit methyltransferase B [Salmonella
           enterica subsp. enterica serovar Newport str. SL317]
 gi|194447684|ref|YP_002047433.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
           serovar Heidelberg str. SL476]
 gi|200388990|ref|ZP_03215602.1| ribosomal RNA small subunit methyltransferase B [Salmonella
           enterica subsp. enterica serovar Virchow str. SL491]
 gi|224493263|sp|B4TJX9|RSMB_SALHS RecName: Full=Ribosomal RNA small subunit methyltransferase B;
           AltName: Full=16S rRNA m5C967 methyltransferase;
           AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
           rsmB
 gi|194405988|gb|ACF66207.1| ribosomal RNA small subunit methyltransferase B [Salmonella
           enterica subsp. enterica serovar Heidelberg str. SL476]
 gi|195628892|gb|EDX48302.1| ribosomal RNA small subunit methyltransferase B [Salmonella
           enterica subsp. enterica serovar Newport str. SL317]
 gi|199606088|gb|EDZ04633.1| ribosomal RNA small subunit methyltransferase B [Salmonella
           enterica subsp. enterica serovar Virchow str. SL491]
 gi|205336021|gb|EDZ22785.1| ribosomal RNA small subunit methyltransferase B [Salmonella
           enterica subsp. enterica serovar Heidelberg str. SL486]
          Length = 429

 Score = 43.9 bits (103), Expect = 0.008,   Method: Composition-based stats.
 Identities = 20/130 (15%), Positives = 49/130 (37%), Gaps = 3/130 (2%)

Query: 29  QIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLIS 88
           Q ++   +   +    E  +  ++    ++      D    + +  GV+     ++ LI+
Sbjct: 4   QNNLRSLAAQAVEQVVEQGQSLSNVLPPLQQKVADKDKALLQELCFGVLRTLSQLEWLIN 63

Query: 89  SCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINA 148
             ++   +  +    +  ++  G  +L+    VP    ++E V  A           IN 
Sbjct: 64  KLMSRPMTGKQ--RTVHYLIMVGFYQLLYTR-VPPHAALAETVEGAVSIKRPQLKGLING 120

Query: 149 VLDKVSRKEE 158
           VL +  R++E
Sbjct: 121 VLRQFQRQQE 130


>gi|198244494|ref|YP_002217372.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
           serovar Dublin str. CT_02021853]
 gi|224493260|sp|B5FJI4|RSMB_SALDC RecName: Full=Ribosomal RNA small subunit methyltransferase B;
           AltName: Full=16S rRNA m5C967 methyltransferase;
           AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
           rsmB
 gi|197939010|gb|ACH76343.1| ribosomal RNA small subunit methyltransferase B [Salmonella
           enterica subsp. enterica serovar Dublin str.
           CT_02021853]
 gi|326625153|gb|EGE31498.1| ribosomal RNA small subunit methyltransferase B [Salmonella
           enterica subsp. enterica serovar Dublin str. 3246]
          Length = 429

 Score = 43.9 bits (103), Expect = 0.008,   Method: Composition-based stats.
 Identities = 20/130 (15%), Positives = 49/130 (37%), Gaps = 3/130 (2%)

Query: 29  QIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLIS 88
           Q ++   +   +    E  +  ++    ++      D    + +  GV+     ++ LI+
Sbjct: 4   QNNLRSLAAQAVEQVVEQGQSLSNVLPPLQQKVADKDKALLQELCFGVLRTLSQLEWLIN 63

Query: 89  SCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINA 148
             ++   +  +    +  ++  G  +L+    VP    ++E V  A           IN 
Sbjct: 64  KLMSRPMTGKQ--RTVHYLIMVGFYQLLYTR-VPPHAALAETVEGAVSIKRPQLKGLING 120

Query: 149 VLDKVSRKEE 158
           VL +  R++E
Sbjct: 121 VLRQFQRQQE 130


>gi|56415328|ref|YP_152403.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. ATCC 9150]
 gi|197364258|ref|YP_002143895.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. AKU_12601]
 gi|81360778|sp|Q5PIT6|RSMB_SALPA RecName: Full=Ribosomal RNA small subunit methyltransferase B;
           AltName: Full=16S rRNA m5C967 methyltransferase;
           AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
           rsmB
 gi|224493266|sp|B5BGV5|RSMB_SALPK RecName: Full=Ribosomal RNA small subunit methyltransferase B;
           AltName: Full=16S rRNA m5C967 methyltransferase;
           AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
           rsmB
 gi|56129585|gb|AAV79091.1| sun protein [Salmonella enterica subsp. enterica serovar Paratyphi
           A str. ATCC 9150]
 gi|197095735|emb|CAR61305.1| sun protein [Salmonella enterica subsp. enterica serovar Paratyphi
           A str. AKU_12601]
          Length = 429

 Score = 43.9 bits (103), Expect = 0.008,   Method: Composition-based stats.
 Identities = 20/130 (15%), Positives = 49/130 (37%), Gaps = 3/130 (2%)

Query: 29  QIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLIS 88
           Q ++   +   +    E  +  ++    ++      D    + +  GV+     ++ LI+
Sbjct: 4   QNNLRSLAAQAVEQVVEQGQSLSNVLPPLQQKVADKDKALLQELCFGVLRTLSQLEWLIN 63

Query: 89  SCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINA 148
             ++   +  +    +  ++  G  +L+    VP    ++E V  A           IN 
Sbjct: 64  KLMSRPMTGKQ--RTVHYLIMVGFYQLLYTR-VPPHAALAETVEGAVSIKRPQLKGLING 120

Query: 149 VLDKVSRKEE 158
           VL +  R++E
Sbjct: 121 VLRQFQRQQE 130


>gi|260466787|ref|ZP_05812972.1| Fmu (Sun) domain protein [Mesorhizobium opportunistum WSM2075]
 gi|259029399|gb|EEW30690.1| Fmu (Sun) domain protein [Mesorhizobium opportunistum WSM2075]
          Length = 475

 Score = 43.6 bits (102), Expect = 0.008,   Method: Composition-based stats.
 Identities = 18/122 (14%), Positives = 41/122 (33%), Gaps = 8/122 (6%)

Query: 52  DTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAG 111
           +            D    R I+   +  +  I  L++  L +    +     L  IL   
Sbjct: 68  ENGHPQYKALDPRDRGLVRAILVTALRYRMTITGLLARRLEKPLPPN--ASALSHILHVA 125

Query: 112 VLELIECHSVPVEVIISEYVCIAHDFFYGDEPKF---INAVLDKVSRKEEIKRSGCVSAI 168
             +++    +P    +   V  A         +F   +N VL  ++R ++ +    ++A 
Sbjct: 126 AAQILF-LDIPDSAAVDLAVTHAK--SDPRTQRFSGLVNGVLRTLARAKDTELPAALAAT 182

Query: 169 TQ 170
            +
Sbjct: 183 DE 184


>gi|182679035|ref|YP_001833181.1| sun protein [Beijerinckia indica subsp. indica ATCC 9039]
 gi|182634918|gb|ACB95692.1| sun protein [Beijerinckia indica subsp. indica ATCC 9039]
          Length = 463

 Score = 43.6 bits (102), Expect = 0.009,   Method: Composition-based stats.
 Identities = 21/119 (17%), Positives = 39/119 (32%), Gaps = 8/119 (6%)

Query: 43  EYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDM 102
           +     F  ++  ++ +     D    R I+   + R   I   ++  L +     R   
Sbjct: 49  QALDDFFAPESNPEILAGLEPRDKALARSIVTVALRRLGTIRAALTGLLAQG--LPRQAP 106

Query: 103 ILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKF---INAVLDKVSRKEE 158
            L  IL     +++    VP    +   V             F   +NAVL  ++R  E
Sbjct: 107 DLEWILLVAGAQILF-LDVPDHAAVDLAVRATR--LDPKSTPFAPLVNAVLRNLARGRE 162


>gi|85703964|ref|ZP_01035067.1| ribosomal RNA small subunit methyltransferase B, putative
           [Roseovarius sp. 217]
 gi|85671284|gb|EAQ26142.1| ribosomal RNA small subunit methyltransferase B, putative
           [Roseovarius sp. 217]
          Length = 422

 Score = 43.6 bits (102), Expect = 0.009,   Method: Composition-based stats.
 Identities = 33/152 (21%), Positives = 52/152 (34%), Gaps = 34/152 (22%)

Query: 18  IARLAAVQALYQIDIIGCSTTEIISE-YETYRFCADTELDVESVYLHVDLEWFRVIIHGV 76
            AR AAV  L            ++ E        A   LD        D    + +    
Sbjct: 7   TARSAAVHLL----------DRVLGEGRLMSELIAGGALDA---LSPPDRARAQRLATDT 53

Query: 77  MDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHD 136
           +      DLL+S  L +         +  ++LR   +EL +        +++E V     
Sbjct: 54  LRGLDRADLLLSRHLRKAPPL----PV-QNVLRLATVELAQGGESHG--VVNEAVE---- 102

Query: 137 FFYGDEPK------FINAVLDKVSRKEEIKRS 162
              G  P+       +NAVL K++  EE  RS
Sbjct: 103 -TIGQSPRHAKLKGLVNAVLRKMT--EEAPRS 131


>gi|225165824|ref|ZP_03727605.1| Fmu (Sun) domain protein [Opitutaceae bacterium TAV2]
 gi|224799937|gb|EEG18385.1| Fmu (Sun) domain protein [Opitutaceae bacterium TAV2]
          Length = 201

 Score = 43.6 bits (102), Expect = 0.009,   Method: Composition-based stats.
 Identities = 16/104 (15%), Positives = 38/104 (36%), Gaps = 9/104 (8%)

Query: 70  RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMIL-CSILRAGVLELIECH-SVPVEVII 127
           + ++ G +     I+ +I+         SR+      ++      ELIE      V  + 
Sbjct: 55  QNLVLGALRHLGRIEGIITPL------MSRMPRAEVQAVFLLAGYELIEGGGDGHVAKVA 108

Query: 128 SEYVCIAHDFFYGDEPKFINAVLDKVSRK-EEIKRSGCVSAITQ 170
              V          E + +NA++ K++    + +  G ++   +
Sbjct: 109 HHAVEQTKRLASQAEARMVNAIVRKLASALADEQPPGRLATAAR 152


>gi|62181914|ref|YP_218331.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
           serovar Choleraesuis str. SC-B67]
 gi|168264711|ref|ZP_02686684.1| ribosomal RNA small subunit methyltransferase B [Salmonella
           enterica subsp. enterica serovar Hadar str. RI_05P066]
 gi|224585203|ref|YP_002639002.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
           serovar Paratyphi C strain RKS4594]
 gi|75480382|sp|Q57J62|RSMB_SALCH RecName: Full=Ribosomal RNA small subunit methyltransferase B;
           AltName: Full=16S rRNA m5C967 methyltransferase;
           AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
           rsmB
 gi|254766862|sp|C0PZV1|RSMB_SALPC RecName: Full=Ribosomal RNA small subunit methyltransferase B;
           AltName: Full=16S rRNA m5C967 methyltransferase;
           AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
           rsmB
 gi|62129547|gb|AAX67250.1| putative rRNA methylase [Salmonella enterica subsp. enterica
           serovar Choleraesuis str. SC-B67]
 gi|205346881|gb|EDZ33512.1| ribosomal RNA small subunit methyltransferase B [Salmonella
           enterica subsp. enterica serovar Hadar str. RI_05P066]
 gi|224469731|gb|ACN47561.1| sun protein [Salmonella enterica subsp. enterica serovar Paratyphi
           C strain RKS4594]
 gi|322716400|gb|EFZ07971.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
           serovar Choleraesuis str. A50]
          Length = 429

 Score = 43.6 bits (102), Expect = 0.009,   Method: Composition-based stats.
 Identities = 20/130 (15%), Positives = 49/130 (37%), Gaps = 3/130 (2%)

Query: 29  QIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLIS 88
           Q ++   +   +    E  +  ++    ++      D    + +  GV+     ++ LI+
Sbjct: 4   QNNLRSLAAQAVEQVVEQGQSLSNVLPPLQQKVADKDKALLQELCFGVLRTLSQLEWLIN 63

Query: 89  SCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINA 148
             ++   +  +    +  ++  G  +L+    VP    ++E V  A           IN 
Sbjct: 64  KLMSRPMTGKQ--RTVHYLIMVGFYQLLYTR-VPPHAALAETVEGAVSIKRPQLKGLING 120

Query: 149 VLDKVSRKEE 158
           VL +  R++E
Sbjct: 121 VLRQFQRQQE 130


>gi|117926942|ref|YP_867559.1| sun protein [Magnetococcus sp. MC-1]
 gi|117610698|gb|ABK46153.1| 16S rRNA m(5)C-967 methyltransferase [Magnetococcus sp. MC-1]
          Length = 452

 Score = 43.6 bits (102), Expect = 0.009,   Method: Composition-based stats.
 Identities = 14/122 (11%), Positives = 42/122 (34%), Gaps = 4/122 (3%)

Query: 32  IIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCL 91
           +   + + ++SE+       + ++  +S            I+ G +     ++  ++  +
Sbjct: 11  MAAAAVSAMLSEHLPLETALEQQIHQQSGTSPEMRGRAHEIVVGTIRHMALLEATLTRFM 70

Query: 92  TEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDE-PKFINAVL 150
            +          + ++L   + +       P+   + E V +            F+NAVL
Sbjct: 71  QKDLKAKH--HYVRAVLLTALYQAQFMR-TPIHSAVDEAVKLVKQQPRDHNLSGFVNAVL 127

Query: 151 DK 152
            +
Sbjct: 128 RR 129


>gi|322615051|gb|EFY11975.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
           serovar Montevideo str. 315996572]
 gi|322617338|gb|EFY14239.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
           serovar Montevideo str. 495297-1]
 gi|322625560|gb|EFY22385.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
           serovar Montevideo str. 495297-3]
 gi|322626402|gb|EFY23211.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
           serovar Montevideo str. 495297-4]
 gi|322632086|gb|EFY28839.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
           serovar Montevideo str. 515920-1]
 gi|322635035|gb|EFY31758.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
           serovar Montevideo str. 515920-2]
 gi|322643264|gb|EFY39831.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
           serovar Montevideo str. 531954]
 gi|322646652|gb|EFY43159.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
           serovar Montevideo str. NC_MB110209-0054]
 gi|322649998|gb|EFY46417.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
           serovar Montevideo str. OH_2009072675]
 gi|322652715|gb|EFY49055.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
           serovar Montevideo str. CASC_09SCPH15965]
 gi|322659528|gb|EFY55772.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
           serovar Montevideo str. 19N]
 gi|322665530|gb|EFY61717.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
           serovar Montevideo str. 81038-01]
 gi|322670424|gb|EFY66563.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
           serovar Montevideo str. MD_MDA09249507]
 gi|322670497|gb|EFY66631.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
           serovar Montevideo str. 414877]
 gi|322675073|gb|EFY71156.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
           serovar Montevideo str. 366867]
 gi|322681610|gb|EFY77639.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
           serovar Montevideo str. 413180]
 gi|322685954|gb|EFY81943.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
           serovar Montevideo str. 446600]
 gi|323195824|gb|EFZ80997.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
           serovar Montevideo str. 609458-1]
 gi|323196420|gb|EFZ81571.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
           serovar Montevideo str. 556150-1]
 gi|323202705|gb|EFZ87744.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
           serovar Montevideo str. 609460]
 gi|323207310|gb|EFZ92260.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
           serovar Montevideo str. 507440-20]
 gi|323211254|gb|EFZ96099.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
           serovar Montevideo str. 556152]
 gi|323216037|gb|EGA00768.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB101509-0077]
 gi|323223472|gb|EGA07800.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB102109-0047]
 gi|323226798|gb|EGA10988.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB110209-0055]
 gi|323231840|gb|EGA15950.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB111609-0052]
 gi|323233207|gb|EGA17302.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
           serovar Montevideo str. 2009083312]
 gi|323237274|gb|EGA21339.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
           serovar Montevideo str. 2009085258]
 gi|323245509|gb|EGA29508.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
           serovar Montevideo str. 315731156]
 gi|323249015|gb|EGA32937.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2009159199]
 gi|323250638|gb|EGA34519.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008282]
 gi|323256867|gb|EGA40581.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008283]
 gi|323263016|gb|EGA46563.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008284]
 gi|323266016|gb|EGA49511.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008285]
 gi|323272773|gb|EGA56176.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008287]
          Length = 429

 Score = 43.6 bits (102), Expect = 0.009,   Method: Composition-based stats.
 Identities = 20/130 (15%), Positives = 49/130 (37%), Gaps = 3/130 (2%)

Query: 29  QIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLIS 88
           Q ++   +   +    E  +  ++    ++      D    + +  GV+     ++ LI+
Sbjct: 4   QNNLRSLAAQAVEQVVEQGQSLSNVLPPLQQKVADKDKALLQELCFGVLRTLSQLEWLIN 63

Query: 89  SCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINA 148
             ++   +  +    +  ++  G  +L+    VP    ++E V  A           IN 
Sbjct: 64  KLMSRPMTGKQ--RTVHYLIMVGFYQLLYTR-VPPHAALAETVEGAVSIKRPQLKGLING 120

Query: 149 VLDKVSRKEE 158
           VL +  R++E
Sbjct: 121 VLRQFQRQQE 130


>gi|258545467|ref|ZP_05705701.1| ribosomal RNA small subunit methyltransferase B [Cardiobacterium
           hominis ATCC 15826]
 gi|258519300|gb|EEV88159.1| ribosomal RNA small subunit methyltransferase B [Cardiobacterium
           hominis ATCC 15826]
          Length = 418

 Score = 43.6 bits (102), Expect = 0.009,   Method: Composition-based stats.
 Identities = 26/144 (18%), Positives = 55/144 (38%), Gaps = 26/144 (18%)

Query: 18  IARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVM 77
            AR AA+           +   +I+++ T       +   +S     D   ++ +++G +
Sbjct: 2   KARQAAL----------HTIDGVINQHRTLNTLLAQD---KSRVSAADQALYQALVYGTL 48

Query: 78  DRKQHIDLLIS-----SCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVC 132
            + + +  L +        T     +        IL  G+ +L++ +     V I+E V 
Sbjct: 49  RQYRALSALCAQMMEKPPATPGHPLA-------IILNLGLYQLLQMNLGDHGV-INETVN 100

Query: 133 IAHDFFYGDEPKFINAVLDKVSRK 156
           +A           INA+L +V R+
Sbjct: 101 LAPHHRLARAKGLINAILRRVQRE 124


>gi|161616434|ref|YP_001590399.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
           serovar Paratyphi B str. SPB7]
 gi|197262016|ref|ZP_03162090.1| ribosomal RNA small subunit methyltransferase B [Salmonella
           enterica subsp. enterica serovar Saintpaul str. SARA23]
 gi|224493265|sp|A9N8B3|RSMB_SALPB RecName: Full=Ribosomal RNA small subunit methyltransferase B;
           AltName: Full=16S rRNA m5C967 methyltransferase;
           AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
           rsmB
 gi|161365798|gb|ABX69566.1| hypothetical protein SPAB_04249 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|197240271|gb|EDY22891.1| ribosomal RNA small subunit methyltransferase B [Salmonella
           enterica subsp. enterica serovar Saintpaul str. SARA23]
          Length = 429

 Score = 43.6 bits (102), Expect = 0.009,   Method: Composition-based stats.
 Identities = 20/130 (15%), Positives = 49/130 (37%), Gaps = 3/130 (2%)

Query: 29  QIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLIS 88
           Q ++   +   +    E  +  ++    ++      D    + +  GV+     ++ LI+
Sbjct: 4   QNNLRSLAAQAVEQVVEQGQSLSNVLPPLQQKVADKDKALLQELCFGVLRTLSQLEWLIN 63

Query: 89  SCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINA 148
             ++   +  +    +  ++  G  +L+    VP    ++E V  A           IN 
Sbjct: 64  KLMSRPMTGKQ--RTVHYLIMVGFYQLLYTR-VPPHAALAETVEGAVSIKRPQLKGLING 120

Query: 149 VLDKVSRKEE 158
           VL +  R++E
Sbjct: 121 VLRQFQRQQE 130


>gi|319899453|ref|YP_004159550.1| SUN-family protein [Bartonella clarridgeiae 73]
 gi|319403421|emb|CBI76989.1| SUN-family protein [Bartonella clarridgeiae 73]
          Length = 455

 Score = 43.6 bits (102), Expect = 0.009,   Method: Composition-based stats.
 Identities = 21/100 (21%), Positives = 37/100 (37%), Gaps = 8/100 (8%)

Query: 65  DLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVE 124
           D    R I+   +  +  I + +S  LT           L  +L   + +++    VP  
Sbjct: 57  DRLLCRAILGAALRHRSQITVALSRFLTR--PLPSQAFSLHHLLHISITQILY-LDVPDH 113

Query: 125 VIISEYVCIAHDFFYGDEPKF---INAVLDKVSRKEEIKR 161
             I   V +A         +F   +NA+L   +R+  I R
Sbjct: 114 AAIDLAVRVAKI--DPRMRRFSGLVNAILRNFAREAAILR 151


>gi|260888974|ref|ZP_05900237.1| ribosomal RNA small subunit methyltransferase B [Leptotrichia
           hofstadii F0254]
 gi|260861034|gb|EEX75534.1| ribosomal RNA small subunit methyltransferase B [Leptotrichia
           hofstadii F0254]
          Length = 433

 Score = 43.6 bits (102), Expect = 0.009,   Method: Composition-based stats.
 Identities = 24/103 (23%), Positives = 41/103 (39%), Gaps = 11/103 (10%)

Query: 58  ESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCL--TEKWSFSRLDMILCSILRAGVLEL 115
           ++ Y   +  +   +I+ V+    +ID LI   +   +K    +L       LR  V +L
Sbjct: 34  KNNYTKKEKMFITNVINVVIKNLIYIDYLIGKSVRNVKKRKIKQL-------LRISVAQL 86

Query: 116 IECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEE 158
               S    VI  E   IA       +  F+NA L  + + +E
Sbjct: 87  FFMESDNAGVIF-EAGEIAKIL-NAHQAGFVNATLQTILKNKE 127


>gi|197249972|ref|YP_002148329.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
           serovar Agona str. SL483]
 gi|224493258|sp|B5F7R5|RSMB_SALA4 RecName: Full=Ribosomal RNA small subunit methyltransferase B;
           AltName: Full=16S rRNA m5C967 methyltransferase;
           AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
           rsmB
 gi|197213675|gb|ACH51072.1| ribosomal RNA small subunit methyltransferase B [Salmonella
           enterica subsp. enterica serovar Agona str. SL483]
          Length = 429

 Score = 43.6 bits (102), Expect = 0.009,   Method: Composition-based stats.
 Identities = 20/130 (15%), Positives = 49/130 (37%), Gaps = 3/130 (2%)

Query: 29  QIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLIS 88
           Q ++   +   +    E  +  ++    ++      D    + +  GV+     ++ LI+
Sbjct: 4   QNNLRSLAAQAVEQVVEQGQSLSNVLPPLQQKVADKDKALLQELCFGVLRTLSQLEWLIN 63

Query: 89  SCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINA 148
             ++   +  +    +  ++  G  +L+    VP    ++E V  A           IN 
Sbjct: 64  KLMSRPMTGKQ--RTVHYLIMVGFYQLLYTR-VPPHAALAETVEGAVSIKRPQLKGLING 120

Query: 149 VLDKVSRKEE 158
           VL +  R++E
Sbjct: 121 VLRQFQRQQE 130


>gi|161506038|ref|YP_001573150.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. arizonae
           serovar 62:z4,z23:-- str. RSK2980]
 gi|224493259|sp|A9MN78|RSMB_SALAR RecName: Full=Ribosomal RNA small subunit methyltransferase B;
           AltName: Full=16S rRNA m5C967 methyltransferase;
           AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
           rsmB
 gi|160867385|gb|ABX24008.1| hypothetical protein SARI_04219 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
          Length = 429

 Score = 43.6 bits (102), Expect = 0.009,   Method: Composition-based stats.
 Identities = 20/130 (15%), Positives = 49/130 (37%), Gaps = 3/130 (2%)

Query: 29  QIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLIS 88
           Q ++   +   +    E  +  ++    ++      D    + +  GV+     ++ LI+
Sbjct: 4   QNNLRSLAAQAVEQVVEQGQSLSNVLPPLQQKVADKDKALLQELCFGVLRTLSQLEWLIN 63

Query: 89  SCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINA 148
             ++   +  +    +  ++  G  +L+    VP    ++E V  A           IN 
Sbjct: 64  KLMSRPMTGKQ--RTVHYLIMVGFYQLLYTR-VPPHAALAETVEGAVSIKRPQLKGLING 120

Query: 149 VLDKVSRKEE 158
           VL +  R++E
Sbjct: 121 VLRQFQRQQE 130


>gi|297581922|ref|ZP_06943842.1| sun protein [Vibrio cholerae RC385]
 gi|297533789|gb|EFH72630.1| sun protein [Vibrio cholerae RC385]
          Length = 434

 Score = 43.6 bits (102), Expect = 0.009,   Method: Composition-based stats.
 Identities = 31/139 (22%), Positives = 49/139 (35%), Gaps = 16/139 (11%)

Query: 20  RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79
           R AA  ALYQ+              +  R  ++     +      D    + I +GV+ +
Sbjct: 12  RAAAASALYQV-------------VDLGRSLSNALPAAQQQIRPRDHALLQEICYGVLRQ 58

Query: 80  KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139
              +   IS  L EK        +   ++  G+ +L     +P    + E V  A D   
Sbjct: 59  LPRL-ESISQALMEK-PLKGKQRVFHFLILVGLYQLSFMR-IPAHAAVGETVEGAQDLKG 115

Query: 140 GDEPKFINAVLDKVSRKEE 158
                 INAVL    R +E
Sbjct: 116 PRLRGLINAVLRNYQRDQE 134


>gi|167554205|ref|ZP_02347946.1| ribosomal RNA small subunit methyltransferase B [Salmonella
           enterica subsp. enterica serovar Saintpaul str. SARA29]
 gi|205321540|gb|EDZ09379.1| ribosomal RNA small subunit methyltransferase B [Salmonella
           enterica subsp. enterica serovar Saintpaul str. SARA29]
          Length = 429

 Score = 43.6 bits (102), Expect = 0.009,   Method: Composition-based stats.
 Identities = 20/130 (15%), Positives = 49/130 (37%), Gaps = 3/130 (2%)

Query: 29  QIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLIS 88
           Q ++   +   +    E  +  ++    ++      D    + +  GV+     ++ LI+
Sbjct: 4   QNNLRSLAAQAVEQVVEQGQSLSNVLPPLQQKVADKDKALLQELCFGVLRTLSQLEWLIN 63

Query: 89  SCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINA 148
             ++   +  +    +  ++  G  +L+    VP    ++E V  A           IN 
Sbjct: 64  KLMSRPMTGKQ--RTVHYLIMVGFYQLLYTR-VPPHAALAETVEGAVSIKRPQLKGLING 120

Query: 149 VLDKVSRKEE 158
           VL +  R++E
Sbjct: 121 VLRQFQRQQE 130


>gi|50086581|ref|YP_048091.1| 16S rRNA m5C967 SAM-dependent methyltransferase [Acinetobacter sp.
           ADP1]
 gi|49532555|emb|CAG70269.1| 16S rRNA m5C967 SAM-dependent methyltransferase [Acinetobacter sp.
           ADP1]
          Length = 434

 Score = 43.6 bits (102), Expect = 0.009,   Method: Composition-based stats.
 Identities = 18/100 (18%), Positives = 41/100 (41%), Gaps = 5/100 (5%)

Query: 59  SVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIEC 118
           +     D   F  ++ G + +   +  +    LT+    +  +  + + L  G+ +++ C
Sbjct: 39  NDIPERDRALFHELVLGTLRQWYALKSITLPLLTK--PLN--NETVETCLYLGLYQVL-C 93

Query: 119 HSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEE 158
             +P    ISE V       +      +NA+L + +R+ E
Sbjct: 94  TRIPAHAAISETVTATKQLGFHALSGIVNAILRRATRETE 133


>gi|157148863|ref|YP_001456182.1| 16S rRNA methyltransferase B [Citrobacter koseri ATCC BAA-895]
 gi|224493244|sp|A8AQI3|RSMB_CITK8 RecName: Full=Ribosomal RNA small subunit methyltransferase B;
           AltName: Full=16S rRNA m5C967 methyltransferase;
           AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
           rsmB
 gi|157086068|gb|ABV15746.1| hypothetical protein CKO_04701 [Citrobacter koseri ATCC BAA-895]
          Length = 428

 Score = 43.6 bits (102), Expect = 0.010,   Method: Composition-based stats.
 Identities = 24/145 (16%), Positives = 54/145 (37%), Gaps = 16/145 (11%)

Query: 15  RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74
           ++   R  A QA+ Q+   G S + ++               ++      D    + +  
Sbjct: 2   KKQNLRSLAAQAVEQVVEQGQSLSNVL-------------PPLQQKVSDKDKALLQELCF 48

Query: 75  GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134
           GV+     ++ LI+  ++   +  +    +  ++  G  +L+    +P    ++E V  A
Sbjct: 49  GVLRTLSQLEWLINKLMSRPMTGKQ--RTVHYLIMVGFYQLLHTR-IPPHAALAETVEGA 105

Query: 135 HDFFYGDEPKFINAVLDKVSRKEEI 159
                      IN VL +  R++E 
Sbjct: 106 VAIKRPQLKGLINGVLRQFQRQQEA 130


>gi|258622988|ref|ZP_05718003.1| sun protein [Vibrio mimicus VM573]
 gi|258584771|gb|EEW09505.1| sun protein [Vibrio mimicus VM573]
          Length = 438

 Score = 43.6 bits (102), Expect = 0.010,   Method: Composition-based stats.
 Identities = 32/139 (23%), Positives = 50/139 (35%), Gaps = 16/139 (11%)

Query: 20  RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79
           R AA  ALYQ+  +G S +  +                +      D    + I +GV+ +
Sbjct: 16  RAAAASALYQVVDLGQSLSNAL-------------PAAQQQIRPRDHALLQEICYGVLRQ 62

Query: 80  KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139
              +   IS  L EK        +   ++  G+ +L     +P    + E V  A D   
Sbjct: 63  LPRL-ESISQSLMEK-PLKGKQRVFHFLILVGLYQLSFMR-IPAHAAVGETVEGAQDLKG 119

Query: 140 GDEPKFINAVLDKVSRKEE 158
                 INAVL    R +E
Sbjct: 120 PRLRGLINAVLRNYQRDQE 138


>gi|72383594|ref|YP_292949.1| Fmu, rRNA SAM-dependent methyltransferase [Prochlorococcus marinus
           str. NATL2A]
 gi|72003444|gb|AAZ59246.1| Fmu, rRNA SAM-dependent methyltransferase [Prochlorococcus marinus
           str. NATL2A]
          Length = 438

 Score = 43.6 bits (102), Expect = 0.010,   Method: Composition-based stats.
 Identities = 24/143 (16%), Positives = 55/143 (38%), Gaps = 20/143 (13%)

Query: 19  ARLAA---VQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           AR AA   +QA     + G +  ++  E     +           +  +D      + +G
Sbjct: 6   ARKAAWDVIQA-----VGGGAFADVALERIFNLYS----------FKSIDKGLITELSYG 50

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
            + ++ ++D  I   L +     +   +L  +L  G+ ++++   +P    I+  V +A 
Sbjct: 51  AIRQRYYLDCWID-YLGKV-PAKKQPPLLRWLLHLGLYQVLKMKRIPPAAAINTTVELAK 108

Query: 136 DFFYGDEPKFINAVLDKVSRKEE 158
            +        +N +L    R +E
Sbjct: 109 TYHLKKLAPVVNGILRSALRSKE 131


>gi|90406716|ref|ZP_01214909.1| sun protein [Psychromonas sp. CNPT3]
 gi|90312169|gb|EAS40261.1| sun protein [Psychromonas sp. CNPT3]
          Length = 434

 Score = 43.6 bits (102), Expect = 0.011,   Method: Composition-based stats.
 Identities = 19/106 (17%), Positives = 37/106 (34%), Gaps = 11/106 (10%)

Query: 58  ESVYLHVDLEWFRVIIHGVMDRKQHID----LLISSCLTEKWSFSRLDMILCSILRAGVL 113
           +      D    +V+ +GV+     +D     L+   L  K        +   ++  G+ 
Sbjct: 29  QKDLTPKDKALLQVLCYGVLRTLPRLDFFCRSLMQKPLKGK------QRVFHFLILVGIY 82

Query: 114 ELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEI 159
           +L+    +P    + E V  A           +N VL    R++E 
Sbjct: 83  QLLYTR-IPSHAAVGETVNGAKALNKQALKGMVNGVLRNFLREQEA 127


>gi|332159134|ref|YP_004424413.1| sun protein (fmu protein) [Pyrococcus sp. NA2]
 gi|331034597|gb|AEC52409.1| sun protein (fmu protein) [Pyrococcus sp. NA2]
          Length = 450

 Score = 43.6 bits (102), Expect = 0.011,   Method: Composition-based stats.
 Identities = 26/118 (22%), Positives = 46/118 (38%), Gaps = 6/118 (5%)

Query: 38  TEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSF 97
            E+ S++   R     E         +   +    +  +   +  ID +I+S L +    
Sbjct: 23  KELSSKHALERIFRKVEGRDRETARGIAHAY----VFEIEKWRAKIDFIINSVL-KGSRV 77

Query: 98  SRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSR 155
             LD  L ++LR GV E+     V   +     V +  + F     KF NA+L +V +
Sbjct: 78  EDLDPYLANLLRIGVFEMKF-KGVNPAIATDSIVRVVKEKFDLTRAKFANAILREVEK 134


>gi|168823234|ref|ZP_02835234.1| ribosomal RNA small subunit methyltransferase B [Salmonella
           enterica subsp. enterica serovar Weltevreden str.
           HI_N05-537]
 gi|205354964|ref|YP_002228765.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
           serovar Gallinarum str. 287/91]
 gi|207858650|ref|YP_002245301.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
           serovar Enteritidis str. P125109]
 gi|224493261|sp|B5R1E5|RSMB_SALEP RecName: Full=Ribosomal RNA small subunit methyltransferase B;
           AltName: Full=16S rRNA m5C967 methyltransferase;
           AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
           rsmB
 gi|224493262|sp|B5RH47|RSMB_SALG2 RecName: Full=Ribosomal RNA small subunit methyltransferase B;
           AltName: Full=16S rRNA m5C967 methyltransferase;
           AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
           rsmB
 gi|205274745|emb|CAR39801.1| sun protein [Salmonella enterica subsp. enterica serovar Gallinarum
           str. 287/91]
 gi|205340499|gb|EDZ27263.1| ribosomal RNA small subunit methyltransferase B [Salmonella
           enterica subsp. enterica serovar Weltevreden str.
           HI_N05-537]
 gi|206710453|emb|CAR34811.1| sun protein [Salmonella enterica subsp. enterica serovar
           Enteritidis str. P125109]
 gi|326630113|gb|EGE36456.1| ribosomal RNA small subunit methyltransferase B [Salmonella
           enterica subsp. enterica serovar Gallinarum str. 9]
          Length = 429

 Score = 43.6 bits (102), Expect = 0.011,   Method: Composition-based stats.
 Identities = 20/130 (15%), Positives = 49/130 (37%), Gaps = 3/130 (2%)

Query: 29  QIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLIS 88
           Q ++   +   +    E  +  ++    ++      D    + +  GV+     ++ LI+
Sbjct: 4   QNNLRSLAAQAVELVVEQGQSLSNVLPPLQQKVADKDKALLQELCFGVLRTLSQLEWLIN 63

Query: 89  SCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINA 148
             ++   +  +    +  ++  G  +L+    VP    ++E V  A           IN 
Sbjct: 64  KLMSRPMTGKQ--RTVHYLIMVGFYQLLYTR-VPPHAALAETVEGAVAIKRPQLKGLING 120

Query: 149 VLDKVSRKEE 158
           VL +  R++E
Sbjct: 121 VLRQFQRQQE 130


>gi|254784303|ref|YP_003071731.1| ribosomal RNA small subunit methyltransferase B [Teredinibacter
           turnerae T7901]
 gi|237683392|gb|ACR10656.1| ribosomal RNA small subunit methyltransferase B [Teredinibacter
           turnerae T7901]
          Length = 433

 Score = 43.2 bits (101), Expect = 0.011,   Method: Composition-based stats.
 Identities = 30/152 (19%), Positives = 54/152 (35%), Gaps = 19/152 (12%)

Query: 19  ARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMD 78
           AR   VQA         +  E+++++ +     DT +   +     D   F+ + +G + 
Sbjct: 4   AR---VQA-------ARTLGEVLAKHCSLNKPFDTGI---NKLDERDRGLFQELCYGTLR 50

Query: 79  RKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFF 138
               ++ +    L +       D  + ++L  G+ +L     VP    ISE V  +    
Sbjct: 51  WYHRLEAIAGELLQK--PLRNKDQDVYALLLIGLYQLEYLR-VPDHAAISETVNASRALK 107

Query: 139 YGDEPKFINAVLDKVSRKEEI---KRSGCVSA 167
                  +N  L    R  E    K SG   A
Sbjct: 108 KPWASGLLNGALRSFQRDREQIFKKISGKPQA 139


>gi|262172810|ref|ZP_06040488.1| ribosomal RNA small subunit methyltransferase B [Vibrio mimicus
           MB-451]
 gi|261893886|gb|EEY39872.1| ribosomal RNA small subunit methyltransferase B [Vibrio mimicus
           MB-451]
          Length = 426

 Score = 43.2 bits (101), Expect = 0.011,   Method: Composition-based stats.
 Identities = 32/139 (23%), Positives = 50/139 (35%), Gaps = 16/139 (11%)

Query: 20  RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79
           R AA  ALYQ+  +G S +  +                +      D    + I +GV+ +
Sbjct: 4   RAAAASALYQVVDLGQSLSNAL-------------PAAQQQIRPRDHALLQEICYGVLRQ 50

Query: 80  KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139
              +   IS  L EK        +   ++  G+ +L     +P    + E V  A D   
Sbjct: 51  LPRL-ESISQSLMEK-PLKGKQRVFHFLILVGLYQLSFMR-IPAHAAVGETVEGAQDLKG 107

Query: 140 GDEPKFINAVLDKVSRKEE 158
                 INAVL    R +E
Sbjct: 108 PRLRGLINAVLRNYQRDQE 126


>gi|90019668|ref|YP_525495.1| Sun protein [Saccharophagus degradans 2-40]
 gi|89949268|gb|ABD79283.1| ribosomal RNA small subunit methyltransferase B [Saccharophagus
           degradans 2-40]
          Length = 445

 Score = 43.2 bits (101), Expect = 0.012,   Method: Composition-based stats.
 Identities = 30/148 (20%), Positives = 51/148 (34%), Gaps = 14/148 (9%)

Query: 10  LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF 69
           +  S  + I  L A+           +   +IS   +     D  LD        +    
Sbjct: 1   MAKSPNKRITNLRAL--------AAMTLAPVISGSRSLSTILDKALDAVE---PKERPLM 49

Query: 70  RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISE 129
           + +  G +     ID LI+  L +K  F   D  + +++  G+ ++      P    I E
Sbjct: 50  QTLCLGSLRVFPKID-LIARKLLQK-PFKSRDNDVYALIVLGIYQMDYLR-TPDHAAIGE 106

Query: 130 YVCIAHDFFYGDEPKFINAVLDKVSRKE 157
            V  A         K IN VL    R++
Sbjct: 107 TVEAAKALNKPWASKLINGVLRNYQREK 134


>gi|239832893|ref|ZP_04681222.1| Sun, sun protein [Ochrobactrum intermedium LMG 3301]
 gi|239825160|gb|EEQ96728.1| Sun, sun protein [Ochrobactrum intermedium LMG 3301]
          Length = 465

 Score = 43.2 bits (101), Expect = 0.012,   Method: Composition-based stats.
 Identities = 18/97 (18%), Positives = 37/97 (38%), Gaps = 8/97 (8%)

Query: 65  DLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVE 124
           D    R I+   +  +  I+  I+  L          + L  +L   + ++     +P  
Sbjct: 68  DRALVRAILGSALRNRGSIERAINKRLDR--PLPENAVALKHLLHVAIAQIFY-LDLPDH 124

Query: 125 VIISEYVCIAHDFFYGDEPKF---INAVLDKVSRKEE 158
             +   V  A+        K+   +NA+L ++SR +E
Sbjct: 125 SAVDLAVEAAN--SDPRNRKYAGLVNALLRRLSRNKE 159


>gi|23016809|ref|ZP_00056561.1| COG0144: tRNA and rRNA cytosine-C5-methylases [Magnetospirillum
           magnetotacticum MS-1]
          Length = 432

 Score = 43.2 bits (101), Expect = 0.013,   Method: Composition-based stats.
 Identities = 23/98 (23%), Positives = 39/98 (39%), Gaps = 3/98 (3%)

Query: 59  SVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIEC 118
           S     D  + R+++   + R   ID LI  C+ +            + LR G+ +L+  
Sbjct: 38  SKLEERDRGFVRMLLGTTLRRLGQIDALIEHCVEKPMRAGAAGA-EHA-LRLGICQLLF- 94

Query: 119 HSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRK 156
             V     IS  V +          K +NAVL ++ R+
Sbjct: 95  LDVAPHAAISTTVDLVKGSKLAGFAKLLNAVLRRLDRE 132


>gi|124025193|ref|YP_001014309.1| Sun protein (Fmu protein) [Prochlorococcus marinus str. NATL1A]
 gi|123960261|gb|ABM75044.1| Sun protein (Fmu protein) [Prochlorococcus marinus str. NATL1A]
          Length = 448

 Score = 43.2 bits (101), Expect = 0.013,   Method: Composition-based stats.
 Identities = 25/143 (17%), Positives = 54/143 (37%), Gaps = 20/143 (13%)

Query: 19  ARLAA---VQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           AR AA   +QA     + G S  ++  E     +           +  +D      + +G
Sbjct: 15  ARKAAWEVIQA-----VGGGSFADVALERIFNLYS----------FKSIDKALITELSYG 59

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
            + ++ ++D  I   L +     +   +L  +L  G+ ++++   +P    I+  V +A 
Sbjct: 60  AIRQRYYLDCWID-HLGKV-PAKKQPPLLRWLLHLGLYQVLKMKRIPPAAAINTTVELAK 117

Query: 136 DFFYGDEPKFINAVLDKVSRKEE 158
                     +N +L    R +E
Sbjct: 118 THHLRKLAPVVNGILRSALRSKE 140


>gi|296533616|ref|ZP_06896179.1| rRNA (cytosine-C(5)-)-methyltransferase [Roseomonas cervicalis ATCC
           49957]
 gi|296266054|gb|EFH12116.1| rRNA (cytosine-C(5)-)-methyltransferase [Roseomonas cervicalis ATCC
           49957]
          Length = 376

 Score = 43.2 bits (101), Expect = 0.013,   Method: Composition-based stats.
 Identities = 18/80 (22%), Positives = 31/80 (38%), Gaps = 12/80 (15%)

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA- 134
           V+ R   +D ++   L  +         + + LR G  EL+     P    ++  V +  
Sbjct: 14  VLRRLGSLDAVLEPSLRREPPPE-----VRNALRIGAAELL-LLETPPHAAVASCVDLVP 67

Query: 135 HDFFYGDEPKFINAVLDKVS 154
             F        +NAVL KV+
Sbjct: 68  RPF-----AGLVNAVLRKVA 82


>gi|13473485|ref|NP_105052.1| hypothetical protein mlr4098 [Mesorhizobium loti MAFF303099]
 gi|14024234|dbj|BAB50838.1| mlr4098 [Mesorhizobium loti MAFF303099]
          Length = 462

 Score = 43.2 bits (101), Expect = 0.014,   Method: Composition-based stats.
 Identities = 19/109 (17%), Positives = 40/109 (36%), Gaps = 8/109 (7%)

Query: 65  DLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVE 124
           D    R I+   +  +  I  L++  L +    +     L  IL     +++    +P  
Sbjct: 68  DRGLVRAILVTALRFRMTITGLLARRLEKPLPPN--ATALSHILHVAAAQILF-LDIPDS 124

Query: 125 VIISEYVCIAHDFFYGDEPKF---INAVLDKVSRKEEIKRSGCVSAITQ 170
             +   V  A         +F   +N VL  ++R +E +    ++A  +
Sbjct: 125 AAVDLAVTHAK--SDPRTQRFSGLVNGVLRTLARAKETELPAALAATDE 171


>gi|320087854|emb|CBY97617.1| Ribosomal RNA small subunit methyltransferase B rRNA
           (cytosine-C(5)-)-methyltransferase; 16S rRNA m5C967
           methyltransferase [Salmonella enterica subsp. enterica
           serovar Weltevreden str. 2007-60-3289-1]
          Length = 429

 Score = 43.2 bits (101), Expect = 0.014,   Method: Composition-based stats.
 Identities = 20/130 (15%), Positives = 49/130 (37%), Gaps = 3/130 (2%)

Query: 29  QIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLIS 88
           Q ++   +   +    E  +  ++    ++      D    + +  GV+     ++ LI+
Sbjct: 4   QNNLRSLAAQAVELVVEQGQSLSNVFPPLQQKVADKDKALLQELCFGVLRTLSQLEWLIN 63

Query: 89  SCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINA 148
             ++   +  +    +  ++  G  +L+    VP    ++E V  A           IN 
Sbjct: 64  KLMSRPMTGKQ--RTVHYLIMVGFYQLLYTR-VPPHAALAETVEGAVAIKRPQLKGLING 120

Query: 149 VLDKVSRKEE 158
           VL +  R++E
Sbjct: 121 VLRQFQRQQE 130


>gi|260771086|ref|ZP_05880014.1| ribosomal RNA small subunit methyltransferase B [Vibrio furnissii
           CIP 102972]
 gi|260613975|gb|EEX39166.1| ribosomal RNA small subunit methyltransferase B [Vibrio furnissii
           CIP 102972]
          Length = 426

 Score = 43.2 bits (101), Expect = 0.014,   Method: Composition-based stats.
 Identities = 26/140 (18%), Positives = 47/140 (33%), Gaps = 16/140 (11%)

Query: 20  RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79
           R AA Q L+Q+   G S +  +                +      D    + I +G +  
Sbjct: 4   RAAAAQVLFQVVDKGQSLSMAL-------------PAAQQNIRPRDHALLQEICYGALRY 50

Query: 80  KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139
              +   I++ L +         +   ++  G+ +L     +P    + E V  A D   
Sbjct: 51  LPRL-ESIANALMDS-PLKGKQRVFHHLILVGIYQLSFMR-IPPHAAVGETVEGAQDLKG 107

Query: 140 GDEPKFINAVLDKVSRKEEI 159
                 INAVL    R ++ 
Sbjct: 108 PRLRGLINAVLRNYQRNQDA 127


>gi|294930141|ref|XP_002779491.1| hypothetical protein Pmar_PMAR025058 [Perkinsus marinus ATCC 50983]
 gi|239888679|gb|EER11286.1| hypothetical protein Pmar_PMAR025058 [Perkinsus marinus ATCC 50983]
          Length = 294

 Score = 43.2 bits (101), Expect = 0.014,   Method: Composition-based stats.
 Identities = 8/27 (29%), Positives = 14/27 (51%)

Query: 111 GVLELIECHSVPVEVIISEYVCIAHDF 137
              EL+    +P  V+I+E   +A +F
Sbjct: 2   AAFELLNHQHIPTTVVINEANSLAKEF 28


>gi|209693697|ref|YP_002261625.1| ribosomal RNA small subunit methyltransferase B [Aliivibrio
           salmonicida LFI1238]
 gi|208007648|emb|CAQ77758.1| ribosomal RNA small subunit methyltransferase B [Aliivibrio
           salmonicida LFI1238]
          Length = 444

 Score = 42.8 bits (100), Expect = 0.014,   Method: Composition-based stats.
 Identities = 24/139 (17%), Positives = 47/139 (33%), Gaps = 16/139 (11%)

Query: 20  RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79
           R AA + +YQ+   G S +  +                +S     D    + I +GV+  
Sbjct: 22  RAAAAKVIYQVVDQGHSLSSAL-------------PKAQSEIKPRDQALLQEICYGVLRF 68

Query: 80  KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139
              ++ +  S + +         +   ++  G+ +L     +P    + E V    +   
Sbjct: 69  LPRLESVAQSLMDK--PLKGKQRVFHHLILVGIYQLSFMR-IPAHAAVGETVEGTKNLKG 125

Query: 140 GDEPKFINAVLDKVSRKEE 158
                 IN VL    R +E
Sbjct: 126 PKLRGLINGVLRSYQRSQE 144


>gi|163739806|ref|ZP_02147213.1| Fmu (Sun) [Phaeobacter gallaeciensis BS107]
 gi|161386840|gb|EDQ11202.1| Fmu (Sun) [Phaeobacter gallaeciensis BS107]
          Length = 421

 Score = 42.8 bits (100), Expect = 0.014,   Method: Composition-based stats.
 Identities = 25/139 (17%), Positives = 47/139 (33%), Gaps = 20/139 (14%)

Query: 17  GIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGV 76
             AR  A+  L           E++ E +    C              +    + +    
Sbjct: 5   TQARRRAIHLL----------DEVLGEGKLLSEC--YAAGALDKLPAEERARTQRLATDT 52

Query: 77  MDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCI-AH 135
           +   +  D ++   L +          + + LR G +EL  C       +++E V I + 
Sbjct: 53  LRNLERADRILQKHLKKATPL-----TVHNALRIGTVEL--CQGGAAHGVVNEMVDIVSR 105

Query: 136 DFFYGDEPKFINAVLDKVS 154
              +G     +NAVL KV+
Sbjct: 106 HRRHGKLKGLVNAVLRKVA 124


>gi|269123621|ref|YP_003306198.1| Fmu (Sun) domain-containing protein [Streptobacillus moniliformis
           DSM 12112]
 gi|268314947|gb|ACZ01321.1| Fmu (Sun) domain protein [Streptobacillus moniliformis DSM 12112]
          Length = 422

 Score = 42.8 bits (100), Expect = 0.015,   Method: Composition-based stats.
 Identities = 24/122 (19%), Positives = 48/122 (39%), Gaps = 9/122 (7%)

Query: 37  TTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWS 96
             E+I E + Y       +   + Y   +  +   +++  +    +ID +I   L    S
Sbjct: 11  LDEVI-ENKKYSNLQLKYMFENNSYTKGEKAFLNNMLNVTLKNLIYIDYVI---LKLARS 66

Query: 97  FSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRK 156
             R       ILR  + +++   S  +  +I E V +  +     +  FIN+ L    RK
Sbjct: 67  IKRKT---KQILRLSIAQILYT-STDIAGVIYEAVELGKE-ENIYQANFINSTLRNFIRK 121

Query: 157 EE 158
           ++
Sbjct: 122 KD 123


>gi|228476962|ref|ZP_04061600.1| ribosomal RNA small subunit methyltransferase B [Streptococcus
           salivarius SK126]
 gi|228250981|gb|EEK10152.1| ribosomal RNA small subunit methyltransferase B [Streptococcus
           salivarius SK126]
          Length = 440

 Score = 42.8 bits (100), Expect = 0.015,   Method: Composition-based stats.
 Identities = 28/142 (19%), Positives = 55/142 (38%), Gaps = 15/142 (10%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           +  AR  A++ L           E+  E        +  L  +S     D      I++G
Sbjct: 6   KKTARGQALEVL----------EEVFQEGAYSNIALNAHLS-KSQLTDKDKALVTEIVYG 54

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
            +  K  +   I + + E     +L+  +  +L   + +L     +P   ++++ V IA 
Sbjct: 55  TVAHKITL-EWILAHVIEDR--DKLEPWVYDLLLLSLYQLAYLDKIPAHAVVNDAVAIAK 111

Query: 136 DFFYGDEP-KFINAVLDKVSRK 156
           +        K +NAVL K+S +
Sbjct: 112 NRGNKKGAEKLVNAVLRKLSSQ 133


>gi|254780666|ref|YP_003065079.1| Fmu (Sun) domain protein [Candidatus Liberibacter asiaticus str.
           psy62]
 gi|254040343|gb|ACT57139.1| Fmu (Sun) domain protein [Candidatus Liberibacter asiaticus str.
           psy62]
          Length = 445

 Score = 42.8 bits (100), Expect = 0.015,   Method: Composition-based stats.
 Identities = 22/100 (22%), Positives = 38/100 (38%), Gaps = 10/100 (10%)

Query: 62  LHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSV 121
              D    R I++  +     ID ++   L    S  R    L  +LR  V +++     
Sbjct: 42  SQRDQILVRAIVNVTLRFLPRIDAVLDFVLIS--SLPRKKYSLQQLLRVSVAQILYLDVA 99

Query: 122 PVEVIISEYVCIAHDFFYGDE----PKFINAVLDKVSRKE 157
              V+    V  A       E     K +N++L +VSR++
Sbjct: 100 DYAVV-DLAVEQAKR---DKENRHFAKLVNSILRRVSREK 135


>gi|271502215|ref|YP_003335241.1| sun protein [Dickeya dadantii Ech586]
 gi|270345770|gb|ACZ78535.1| sun protein [Dickeya dadantii Ech586]
          Length = 431

 Score = 42.8 bits (100), Expect = 0.015,   Method: Composition-based stats.
 Identities = 22/139 (15%), Positives = 50/139 (35%), Gaps = 3/139 (2%)

Query: 32  IIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCL 91
           +   + T ++   E  +  +     ++      D    + I  GV+     +D  +   +
Sbjct: 7   LRSIAATTLLQVVEQGQSLSQLLPALQRDISERDRGLLQEICFGVLRVLPQLDWYLRQLM 66

Query: 92  TEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLD 151
            +    +    +L  +L  G+ +LI    +P    ++E V  A           IN VL 
Sbjct: 67  AK--PLTGKQKVLHYLLMVGLYQLIHTR-IPPHAALAETVNGAVALKRPQLKGLINGVLR 123

Query: 152 KVSRKEEIKRSGCVSAITQ 170
           +  R++E  +    +   +
Sbjct: 124 QFQREQEALQQRLQNNPAR 142


>gi|147795869|emb|CAN61042.1| hypothetical protein VITISV_037527 [Vitis vinifera]
          Length = 360

 Score = 42.8 bits (100), Expect = 0.015,   Method: Composition-based stats.
 Identities = 21/127 (16%), Positives = 38/127 (29%), Gaps = 37/127 (29%)

Query: 66  LEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFS---RLDMILCSILRAGVLELIECHSVP 122
             + R ++  V+D+     L+I       W      R+  +   IL   + E+       
Sbjct: 221 RSFTRKLLVAVVDKWNSHVLVIDKVAPPNWKNEPAGRI--LELCILHLAMSEI-AVLGTR 277

Query: 123 VEVIISE-------------------------------YVCIAHDFFYGDEPKFINAVLD 151
            +++I+E                                V +A  F  G  P+ IN  L 
Sbjct: 278 HQIVINEVNSFSFSLSFSHDLPVKCISTSLTLIWLLMKAVDLAKRFCDGAAPRIINGCLR 337

Query: 152 KVSRKEE 158
              +  E
Sbjct: 338 TFVKDLE 344


>gi|296104996|ref|YP_003615142.1| 16S rRNA methyltransferase B [Enterobacter cloacae subsp. cloacae
           ATCC 13047]
 gi|295059455|gb|ADF64193.1| 16S rRNA methyltransferase B [Enterobacter cloacae subsp. cloacae
           ATCC 13047]
          Length = 438

 Score = 42.8 bits (100), Expect = 0.015,   Method: Composition-based stats.
 Identities = 24/144 (16%), Positives = 54/144 (37%), Gaps = 16/144 (11%)

Query: 15  RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74
           ++   R  A QA+ Q+   G S + ++               ++      D    + +  
Sbjct: 12  KKQNLRSLAAQAVEQVVEQGQSLSNVL-------------PPLQQKVSDKDKALLQELCF 58

Query: 75  GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134
           GV+     ++ LI+  ++   +  +    +  ++  G  +L+    +P    ++E V  A
Sbjct: 59  GVLRTLSQLEWLINKLMSRPMTGKQ--RTVHYLIMVGFYQLLHTR-IPPHAALAETVEGA 115

Query: 135 HDFFYGDEPKFINAVLDKVSRKEE 158
                      IN VL +  R++E
Sbjct: 116 VAIKRPQLKGLINGVLRQFQRQQE 139


>gi|146337494|ref|YP_001202542.1| putative ribosomal RNA small subunit methyltransferase B
           [Bradyrhizobium sp. ORS278]
 gi|146190300|emb|CAL74296.1| putative Ribosomal RNA small subunit methyltransferase B (rRNA
           (cytosine-C(5)-)-methyltransferase) (16S rRNA m5C967
           methyltransferase)(rsmB) [Bradyrhizobium sp. ORS278]
          Length = 450

 Score = 42.8 bits (100), Expect = 0.016,   Method: Composition-based stats.
 Identities = 21/129 (16%), Positives = 41/129 (31%), Gaps = 14/129 (10%)

Query: 37  TTEIISEYETYRFCADTELDVESVYL------HVDLEWFRVIIHGVMDRKQHIDLLISSC 90
             ++I          D +LD    +         D    R ++   + R   +  ++S  
Sbjct: 21  AADVIDGVLHKHRTLDDQLDGPGAHPGLKQLADRDRALMRRLVATTLRRLGTLGNVLSRL 80

Query: 91  LTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKF---IN 147
           L              S L  G  +++    VP    +   V +          K+   +N
Sbjct: 81  LDRGIPTD--APRAQSALLIGAAQILWM-DVPDHAAVDLSVRLVQA--DRRAAKYAGLVN 135

Query: 148 AVLDKVSRK 156
           AVL + +R+
Sbjct: 136 AVLRRCARE 144


>gi|319407809|emb|CBI81460.1| SUN-family protein [Bartonella sp. 1-1C]
          Length = 456

 Score = 42.8 bits (100), Expect = 0.016,   Method: Composition-based stats.
 Identities = 19/100 (19%), Positives = 36/100 (36%), Gaps = 8/100 (8%)

Query: 65  DLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVE 124
           D    R I+   +  +  I + +S  L            L  +L   + +++    +P  
Sbjct: 58  DRLLCRAILGAALRHRSQITVALSRFLVR--PLPAQAFSLHHLLHISITQILY-LDIPDH 114

Query: 125 VIISEYVCIAHDFFYGDEPKF---INAVLDKVSRKEEIKR 161
             I   V +A         +F   +NA+L   +R+  I R
Sbjct: 115 AAIDLAVRVAKI--DPRMRRFSGLVNAILRNFAREAPILR 152


>gi|16762874|ref|NP_458491.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
           serovar Typhi str. CT18]
 gi|29144361|ref|NP_807703.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
           serovar Typhi str. Ty2]
 gi|213425783|ref|ZP_03358533.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
           serovar Typhi str. E02-1180]
 gi|213859535|ref|ZP_03385239.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
           serovar Typhi str. M223]
 gi|289806045|ref|ZP_06536674.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
           serovar Typhi str. AG3]
 gi|46396982|sp|Q8Z1X1|RSMB_SALTI RecName: Full=Ribosomal RNA small subunit methyltransferase B;
           AltName: Full=16S rRNA m5C967 methyltransferase;
           AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
           rsmB
 gi|25303750|pir||AH1009 sun protein [imported] - Salmonella enterica subsp. enterica
           serovar Typhi (strain CT18)
 gi|16505181|emb|CAD09177.1| sun protein [Salmonella enterica subsp. enterica serovar Typhi]
 gi|29139999|gb|AAO71563.1| sun protein [Salmonella enterica subsp. enterica serovar Typhi str.
           Ty2]
          Length = 429

 Score = 42.8 bits (100), Expect = 0.016,   Method: Composition-based stats.
 Identities = 20/130 (15%), Positives = 49/130 (37%), Gaps = 3/130 (2%)

Query: 29  QIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLIS 88
           Q ++   +   +    E  +  ++    ++      D    + +  GV+     ++ LI+
Sbjct: 4   QNNLRSLAAQAVELVVEQGQSLSNVLPPLQQKVADKDKALLQELCFGVLRTLSQLEWLIN 63

Query: 89  SCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINA 148
             ++   +  +    +  ++  G  +L+    VP    ++E V  A           IN 
Sbjct: 64  KLMSRPMTGKQ--RTVHYLIMVGFYQLLYTR-VPPHAALAETVEGAVSIKRPQLKGLING 120

Query: 149 VLDKVSRKEE 158
           VL +  R++E
Sbjct: 121 VLRQFQRQQE 130


>gi|296114107|ref|YP_003628045.1| 16S rRNA m5C967 SAM-dependent methyltransferase [Moraxella
           catarrhalis RH4]
 gi|295921801|gb|ADG62152.1| 16S rRNA m5C967 SAM-dependent methyltransferase [Moraxella
           catarrhalis RH4]
          Length = 448

 Score = 42.8 bits (100), Expect = 0.017,   Method: Composition-based stats.
 Identities = 17/121 (14%), Positives = 41/121 (33%), Gaps = 11/121 (9%)

Query: 40  IISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSR 99
           +I E    +  ++    +          +   ++ G + +   +   IS  L E      
Sbjct: 22  VIEEILNGKSLSELLDPLLKSTEMSSRGFAHELLLGTLRQWWAL-SRISESLIEN----- 75

Query: 100 LDMILC---SILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRK 156
             +      + +  G+ +LI   ++P    I++ V              +NA+L K  + 
Sbjct: 76  -PVTDQGVQAAINIGLYQLIYM-NIPEYAAINDTVEALKQLGKEYGTGLVNAILRKTQKS 133

Query: 157 E 157
           +
Sbjct: 134 K 134


>gi|283480068|emb|CAY75984.1| Ribosomal RNA small subunit methyltransferase B [Erwinia pyrifoliae
           DSM 12163]
          Length = 456

 Score = 42.8 bits (100), Expect = 0.017,   Method: Composition-based stats.
 Identities = 17/130 (13%), Positives = 50/130 (38%), Gaps = 12/130 (9%)

Query: 32  IIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCL 91
           I   +  +++ + ++    ++     +      D    + + +GV+     ++ +IS  +
Sbjct: 37  IAARTIEQVVEQGQS---LSNVLPAAQKSVGDKDAALLQELCYGVLRTLPQLEWIISKLM 93

Query: 92  TEKWSFSRLDMILCS---ILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINA 148
           +       +     +   ++  G+ +L+    +P    ++E V  A           IN 
Sbjct: 94  SRP-----MTGKQRALHFLIMVGLYQLMFTR-IPPHAALAETVEAAVALKRPQLKGLING 147

Query: 149 VLDKVSRKEE 158
           VL +  R+++
Sbjct: 148 VLRQFQRQQD 157


>gi|258626112|ref|ZP_05720963.1| sun protein [Vibrio mimicus VM603]
 gi|258581638|gb|EEW06536.1| sun protein [Vibrio mimicus VM603]
          Length = 438

 Score = 42.8 bits (100), Expect = 0.017,   Method: Composition-based stats.
 Identities = 31/139 (22%), Positives = 49/139 (35%), Gaps = 16/139 (11%)

Query: 20  RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79
           R AA   LYQ+  +G S +  +                +      D    + I +GV+ +
Sbjct: 16  RAAAASVLYQVVDLGQSLSNAL-------------PAAQQQIRPRDHALLQEICYGVLRQ 62

Query: 80  KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139
              +   IS  L EK        +   ++  G+ +L     +P    + E V  A D   
Sbjct: 63  LPRL-ESISQALMEK-PLKGKQRVFHFLILVGLYQLSFMR-IPAHAAVGETVEGAQDLKG 119

Query: 140 GDEPKFINAVLDKVSRKEE 158
                 INAVL    R +E
Sbjct: 120 PRLRGLINAVLRNYQRDQE 138


>gi|315178589|gb|ADT85503.1| cytosine-C5-methylase [Vibrio furnissii NCTC 11218]
          Length = 426

 Score = 42.8 bits (100), Expect = 0.017,   Method: Composition-based stats.
 Identities = 26/140 (18%), Positives = 47/140 (33%), Gaps = 16/140 (11%)

Query: 20  RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79
           R AA Q L+Q+   G S +  +                +      D    + I +G +  
Sbjct: 4   RAAAAQVLFQVVDKGQSLSMAL-------------PAAQQNIRPRDHALLQEICYGALRY 50

Query: 80  KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139
              +   I++ L +         +   ++  G+ +L     +P    + E V  A D   
Sbjct: 51  LPRL-ESIANALMDS-PLKGKQRVFHHLILVGIYQLSFMR-IPPHAAVGETVEGAQDLKG 107

Query: 140 GDEPKFINAVLDKVSRKEEI 159
                 INAVL    R ++ 
Sbjct: 108 PRLRGLINAVLRNYQRNQDA 127


>gi|289824193|ref|ZP_06543788.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
           serovar Typhi str. E98-3139]
          Length = 403

 Score = 42.8 bits (100), Expect = 0.017,   Method: Composition-based stats.
 Identities = 20/130 (15%), Positives = 49/130 (37%), Gaps = 3/130 (2%)

Query: 29  QIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLIS 88
           Q ++   +   +    E  +  ++    ++      D    + +  GV+     ++ LI+
Sbjct: 4   QNNLRSLAAQAVELVVEQGQSLSNVLPPLQQKVADKDKALLQELCFGVLRTLSQLEWLIN 63

Query: 89  SCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINA 148
             ++   +  +    +  ++  G  +L+    VP    ++E V  A           IN 
Sbjct: 64  KLMSRPMTGKQ--RTVHYLIMVGFYQLLYTR-VPPHAALAETVEGAVSIKRPQLKGLING 120

Query: 149 VLDKVSRKEE 158
           VL +  R++E
Sbjct: 121 VLRQFQRQQE 130


>gi|15640076|ref|NP_229703.1| sun protein [Vibrio cholerae O1 biovar El Tor str. N16961]
 gi|121587275|ref|ZP_01677048.1| sun protein [Vibrio cholerae 2740-80]
 gi|121727862|ref|ZP_01680921.1| sun protein [Vibrio cholerae V52]
 gi|147675284|ref|YP_001218368.1| sun protein [Vibrio cholerae O395]
 gi|153817606|ref|ZP_01970273.1| sun protein [Vibrio cholerae NCTC 8457]
 gi|227080281|ref|YP_002808832.1| sun protein [Vibrio cholerae M66-2]
 gi|298501227|ref|ZP_07011026.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholerae
           MAK 757]
 gi|46397040|sp|Q9KVU5|RSMB_VIBCH RecName: Full=Ribosomal RNA small subunit methyltransferase B;
           AltName: Full=16S rRNA m5C967 methyltransferase;
           AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
           rsmB
 gi|9654437|gb|AAF93222.1| sun protein [Vibrio cholerae O1 biovar El Tor str. N16961]
 gi|121548521|gb|EAX58577.1| sun protein [Vibrio cholerae 2740-80]
 gi|121629806|gb|EAX62221.1| sun protein [Vibrio cholerae V52]
 gi|126511874|gb|EAZ74468.1| sun protein [Vibrio cholerae NCTC 8457]
 gi|146317167|gb|ABQ21706.1| sun protein [Vibrio cholerae O395]
 gi|227008169|gb|ACP04381.1| sun protein [Vibrio cholerae M66-2]
 gi|227011953|gb|ACP08163.1| sun protein [Vibrio cholerae O395]
 gi|297540099|gb|EFH76161.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholerae
           MAK 757]
          Length = 434

 Score = 42.8 bits (100), Expect = 0.017,   Method: Composition-based stats.
 Identities = 30/139 (21%), Positives = 48/139 (34%), Gaps = 16/139 (11%)

Query: 20  RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79
           R AA  ALYQ+  +G S +  +                +      D    + I +GV+ +
Sbjct: 12  RAAAASALYQVVDLGHSLSNAL-------------PAAQQQIRPRDHALLQEICYGVLRQ 58

Query: 80  KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139
              +   IS  L           +   ++  G+ +L     +P    + E V  A D   
Sbjct: 59  LPRL-ESISQAL-MGKPLKGKQRVFHFLILVGLYQLSFMR-IPAHAAVGETVEGAQDLKG 115

Query: 140 GDEPKFINAVLDKVSRKEE 158
                 INAVL    R +E
Sbjct: 116 PRLRGLINAVLRNYQRDQE 134


>gi|197334196|ref|YP_002157328.1| ribosomal RNA small subunit methyltransferase B [Vibrio fischeri
           MJ11]
 gi|197315686|gb|ACH65133.1| ribosomal RNA small subunit methyltransferase B [Vibrio fischeri
           MJ11]
          Length = 451

 Score = 42.8 bits (100), Expect = 0.018,   Method: Composition-based stats.
 Identities = 25/139 (17%), Positives = 49/139 (35%), Gaps = 16/139 (11%)

Query: 20  RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79
           R AA + +YQ+   G S +  +                +S     D    + I +GV+  
Sbjct: 29  RAAAAKVIYQVVDQGHSLSSAL-------------PKAQSEIKPRDQALLQEICYGVLRF 75

Query: 80  KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139
              ++ +  S + +         +   ++  G+ +L     +P    ++E V    +   
Sbjct: 76  LPRLESVAQSLMDK--PLKGKQRVFHHLILVGIYQLSFMR-IPAHAAVAETVEGTKNLKG 132

Query: 140 GDEPKFINAVLDKVSRKEE 158
                 INAVL    R +E
Sbjct: 133 PKLRGLINAVLRNYQRSQE 151


>gi|326571735|gb|EGE21748.1| 16S rRNA m5C967 SAM-dependent methyltransferase [Moraxella
           catarrhalis BC8]
 gi|326574350|gb|EGE24293.1| 16S rRNA m5C967 SAM-dependent methyltransferase [Moraxella
           catarrhalis CO72]
          Length = 448

 Score = 42.8 bits (100), Expect = 0.018,   Method: Composition-based stats.
 Identities = 17/121 (14%), Positives = 41/121 (33%), Gaps = 11/121 (9%)

Query: 40  IISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSR 99
           +I E    +  ++    +          +   ++ G + +   +   IS  L E      
Sbjct: 22  VIEEILNGKSLSELLDPLLESTEMSSRGFVHELLLGTLRQWWAL-SRISESLIEN----- 75

Query: 100 LDMILC---SILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRK 156
             +      + +  G+ +LI   ++P    I++ V              +NA+L K  + 
Sbjct: 76  -PVTDQGVQAAINIGLYQLIYM-NIPEYAAINDTVEALKQLGKEYGTGLVNAILRKTQKS 133

Query: 157 E 157
           +
Sbjct: 134 K 134


>gi|326561732|gb|EGE12067.1| 16S rRNA m5C967 SAM-dependent methyltransferase [Moraxella
           catarrhalis 7169]
 gi|326562326|gb|EGE12652.1| 16S rRNA m5C967 SAM-dependent methyltransferase [Moraxella
           catarrhalis 103P14B1]
 gi|326569046|gb|EGE19115.1| 16S rRNA m5C967 SAM-dependent methyltransferase [Moraxella
           catarrhalis BC1]
 gi|326571810|gb|EGE21816.1| 16S rRNA m5C967 SAM-dependent methyltransferase [Moraxella
           catarrhalis BC7]
 gi|326575530|gb|EGE25455.1| 16S rRNA m5C967 SAM-dependent methyltransferase [Moraxella
           catarrhalis 101P30B1]
          Length = 448

 Score = 42.8 bits (100), Expect = 0.018,   Method: Composition-based stats.
 Identities = 17/121 (14%), Positives = 41/121 (33%), Gaps = 11/121 (9%)

Query: 40  IISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSR 99
           +I E    +  ++    +          +   ++ G + +   +   IS  L E      
Sbjct: 22  VIEEILNGKSLSELLDPLLESTEMSSRGFVHELLLGTLRQWWAL-SRISESLIEN----- 75

Query: 100 LDMILC---SILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRK 156
             +      + +  G+ +LI   ++P    I++ V              +NA+L K  + 
Sbjct: 76  -PVTDQGVQAAINIGLYQLIYM-NIPEYAAINDTVEALKQLGKEYGTGLVNAILRKTQKS 133

Query: 157 E 157
           +
Sbjct: 134 K 134


>gi|213025104|ref|ZP_03339551.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
           serovar Typhi str. 404ty]
          Length = 153

 Score = 42.8 bits (100), Expect = 0.018,   Method: Composition-based stats.
 Identities = 20/130 (15%), Positives = 49/130 (37%), Gaps = 3/130 (2%)

Query: 29  QIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLIS 88
           Q ++   +   +    E  +  ++    ++      D    + +  GV+     ++ LI+
Sbjct: 4   QNNLRSLAAQAVELVVEQGQSLSNVLPPLQQKVADKDKALLQELCFGVLRTLSQLEWLIN 63

Query: 89  SCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINA 148
             ++   +  +    +  ++  G  +L+    VP    ++E V  A           IN 
Sbjct: 64  KLMSRPMTGKQ--RTVHYLIMVGFYQLLYTR-VPPHAALAETVEGAVSIKRPQLKGLING 120

Query: 149 VLDKVSRKEE 158
           VL +  R++E
Sbjct: 121 VLRQFQRQQE 130


>gi|153821915|ref|ZP_01974582.1| sun protein [Vibrio cholerae B33]
 gi|254851609|ref|ZP_05240959.1| sun protein [Vibrio cholerae MO10]
 gi|126520535|gb|EAZ77758.1| sun protein [Vibrio cholerae B33]
 gi|254847314|gb|EET25728.1| sun protein [Vibrio cholerae MO10]
          Length = 434

 Score = 42.8 bits (100), Expect = 0.018,   Method: Composition-based stats.
 Identities = 30/139 (21%), Positives = 48/139 (34%), Gaps = 16/139 (11%)

Query: 20  RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79
           R AA  ALYQ+  +G S +  +                +      D    + I +GV+ +
Sbjct: 12  RAAAASALYQVVDLGHSLSNAL-------------PAAQQQIRPRDHALLQEICYGVLRQ 58

Query: 80  KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139
              +   IS  L           +   ++  G+ +L     +P    + E V  A D   
Sbjct: 59  LPRL-ESISQAL-MGKPLKGKQRVFHFLILVGLYQLSFMR-IPAHAAVGETVEGAQDLKG 115

Query: 140 GDEPKFINAVLDKVSRKEE 158
                 INAVL    R +E
Sbjct: 116 PRLRGLINAVLRNYQRDQE 134


>gi|213418736|ref|ZP_03351802.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
           serovar Typhi str. E01-6750]
          Length = 197

 Score = 42.8 bits (100), Expect = 0.018,   Method: Composition-based stats.
 Identities = 20/130 (15%), Positives = 49/130 (37%), Gaps = 3/130 (2%)

Query: 29  QIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLIS 88
           Q ++   +   +    E  +  ++    ++      D    + +  GV+     ++ LI+
Sbjct: 4   QNNLRSLAAQAVELVVEQGQSLSNVLPPLQQKVADKDKALLQELCFGVLRTLSQLEWLIN 63

Query: 89  SCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINA 148
             ++   +  +    +  ++  G  +L+    VP    ++E V  A           IN 
Sbjct: 64  KLMSRPMTGKQ--RTVHYLIMVGFYQLLYTR-VPPHAALAETVEGAVSIKRPQLKGLING 120

Query: 149 VLDKVSRKEE 158
           VL +  R++E
Sbjct: 121 VLRQFQRQQE 130


>gi|229508832|ref|ZP_04398323.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholerae
           B33]
 gi|229517103|ref|ZP_04406549.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholerae
           RC9]
 gi|229606604|ref|YP_002877252.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholerae
           MJ-1236]
 gi|255746774|ref|ZP_05420720.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholera
           CIRS 101]
 gi|229346166|gb|EEO11138.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholerae
           RC9]
 gi|229354107|gb|EEO19039.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholerae
           B33]
 gi|229369259|gb|ACQ59682.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholerae
           MJ-1236]
 gi|255735531|gb|EET90930.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholera
           CIRS 101]
          Length = 426

 Score = 42.4 bits (99), Expect = 0.019,   Method: Composition-based stats.
 Identities = 30/139 (21%), Positives = 48/139 (34%), Gaps = 16/139 (11%)

Query: 20  RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79
           R AA  ALYQ+  +G S +  +                +      D    + I +GV+ +
Sbjct: 4   RAAAASALYQVVDLGHSLSNAL-------------PAAQQQIRPRDHALLQEICYGVLRQ 50

Query: 80  KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139
              +   IS  L           +   ++  G+ +L     +P    + E V  A D   
Sbjct: 51  LPRL-ESISQAL-MGKPLKGKQRVFHFLILVGLYQLSFMR-IPAHAAVGETVEGAQDLKG 107

Query: 140 GDEPKFINAVLDKVSRKEE 158
                 INAVL    R +E
Sbjct: 108 PRLRGLINAVLRNYQRDQE 126


>gi|156932266|ref|YP_001436182.1| 16S rRNA methyltransferase B [Cronobacter sakazakii ATCC BAA-894]
 gi|224493253|sp|A7MPE7|RSMB_ENTS8 RecName: Full=Ribosomal RNA small subunit methyltransferase B;
           AltName: Full=16S rRNA m5C967 methyltransferase;
           AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
           rsmB
 gi|156530520|gb|ABU75346.1| hypothetical protein ESA_00037 [Cronobacter sakazakii ATCC BAA-894]
          Length = 429

 Score = 42.4 bits (99), Expect = 0.020,   Method: Composition-based stats.
 Identities = 24/142 (16%), Positives = 52/142 (36%), Gaps = 22/142 (15%)

Query: 20  RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79
           R  A QA+ Q+   G S + ++               ++      D    + +  GV+  
Sbjct: 8   RSLAAQAIEQVVEKGQSLSTVL-------------PPLQHKVSDKDKALLQELCFGVLRT 54

Query: 80  KQHIDLLISSCLTEKWSFSRLDMILCSI---LRAGVLELIECHSVPVEVIISEYVCIAHD 136
              ++ LI+  ++       +     +I   +  G+ +L+    +P    ++E V  A  
Sbjct: 55  LSQLEWLINKLMSRP-----MTGKQRTIHYLIMVGLYQLLYTR-IPPHAALAETVEGAVA 108

Query: 137 FFYGDEPKFINAVLDKVSRKEE 158
                    IN VL +  R+++
Sbjct: 109 IKRMQFKGLINGVLRQFQRQQD 130


>gi|229508329|ref|ZP_04397833.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholerae BX
           330286]
 gi|262155855|ref|ZP_06028977.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholerae
           INDRE 91/1]
 gi|262166898|ref|ZP_06034619.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholerae
           RC27]
 gi|229354602|gb|EEO19524.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholerae BX
           330286]
 gi|262024669|gb|EEY43349.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholerae
           RC27]
 gi|262030307|gb|EEY48949.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholerae
           INDRE 91/1]
          Length = 426

 Score = 42.4 bits (99), Expect = 0.020,   Method: Composition-based stats.
 Identities = 30/139 (21%), Positives = 48/139 (34%), Gaps = 16/139 (11%)

Query: 20  RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79
           R AA  ALYQ+  +G S +  +                +      D    + I +GV+ +
Sbjct: 4   RAAAASALYQVVDLGHSLSNAL-------------PAAQQQIRPRDHALLQEICYGVLRQ 50

Query: 80  KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139
              +   IS  L           +   ++  G+ +L     +P    + E V  A D   
Sbjct: 51  LPRL-ESISQAL-MGKPLKGKQRVFHFLILVGLYQLSFMR-IPAHAAVGETVEGAQDLKG 107

Query: 140 GDEPKFINAVLDKVSRKEE 158
                 INAVL    R +E
Sbjct: 108 PRLRGLINAVLRNYQRDQE 126


>gi|119943873|ref|YP_941553.1| sun protein [Psychromonas ingrahamii 37]
 gi|119862477|gb|ABM01954.1| sun protein [Psychromonas ingrahamii 37]
          Length = 436

 Score = 42.4 bits (99), Expect = 0.020,   Method: Composition-based stats.
 Identities = 22/109 (20%), Positives = 39/109 (35%), Gaps = 13/109 (11%)

Query: 55  LDVESVYLHVDLEWFRVIIHGVMDRKQHID----LLISSCLT-EKWSFSRLDMILCSILR 109
             V+      D    +V+ +GV+     +D     L+   L  ++     L      IL 
Sbjct: 26  PPVQQDLSPKDKALLQVLCYGVLRTLPRLDFFCRSLMDKALKGKQRDLHFL------IL- 78

Query: 110 AGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEE 158
            G  +L+    +P    + E V  A +         +N VL    R++E
Sbjct: 79  VGFYQLLYTR-IPSHAAVGETVNGAKELKKQALKGMVNGVLRNFLREQE 126


>gi|326563104|gb|EGE13377.1| 16S rRNA m5C967 SAM-dependent methyltransferase [Moraxella
           catarrhalis 12P80B1]
          Length = 448

 Score = 42.4 bits (99), Expect = 0.020,   Method: Composition-based stats.
 Identities = 17/121 (14%), Positives = 41/121 (33%), Gaps = 11/121 (9%)

Query: 40  IISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSR 99
           +I E    +  ++    +          +   ++ G + +   +   IS  L E      
Sbjct: 22  VIEEILNGKSLSELLDPLLESTEMSSRGFVHELLLGTLRQWWAL-SRISESLIEN----- 75

Query: 100 LDMILC---SILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRK 156
             +      + +  G+ +LI   ++P    I++ V              +NA+L K  + 
Sbjct: 76  -PVTDQGVQAAINIGLYQLIYM-NIPEYAAINDTVEALKQLGKEYGTGLVNAILRKTQKS 133

Query: 157 E 157
           +
Sbjct: 134 K 134


>gi|227504402|ref|ZP_03934451.1| possible rRNA SAM-dependent methyltransferase RmsB [Corynebacterium
           striatum ATCC 6940]
 gi|227199050|gb|EEI79098.1| possible rRNA SAM-dependent methyltransferase RmsB [Corynebacterium
           striatum ATCC 6940]
          Length = 506

 Score = 42.4 bits (99), Expect = 0.021,   Method: Composition-based stats.
 Identities = 28/179 (15%), Positives = 57/179 (31%), Gaps = 30/179 (16%)

Query: 4   QDNKKDLKLSHRRGIARLAA--VQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVY 61
           ++N ++      R  A+     VQA       G  T   +S +E  R     +       
Sbjct: 38  KNNSRNSHHPRGRRGAQEKNSFVQA---ARRSGVDTARAVS-FEVLRRVHSDDAFANLTL 93

Query: 62  LHV---------DLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGV 112
                       D  +   + +G +  +  +D +I  C +   +   +   +   LR G 
Sbjct: 94  PKALRVHKLEGRDAAFATELTYGSLRTEGVLDAVIGECSSR--ALDAIAPEVLDALRLGA 151

Query: 113 LELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAV------------LDKVSRKEEI 159
            +++     P    +   V +     +     F N +            LDK++ + EI
Sbjct: 152 YQVLFTRVEPHA-AVDTTVRLVEAADFEKAKGFANGIMRTITRTPAEKWLDKLAPQGEI 209


>gi|59713152|ref|YP_205928.1| 16S rRNA m5C967 methyltransferase,
           S-adenosyl-L-methionine-dependent [Vibrio fischeri
           ES114]
 gi|59481253|gb|AAW87040.1| 16S rRNA m5C967 methyltransferase,
           S-adenosyl-L-methionine-dependent [Vibrio fischeri
           ES114]
          Length = 426

 Score = 42.4 bits (99), Expect = 0.021,   Method: Composition-based stats.
 Identities = 25/139 (17%), Positives = 49/139 (35%), Gaps = 16/139 (11%)

Query: 20  RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79
           R AA + +YQ+   G S +  +                +S     D    + I +GV+  
Sbjct: 4   RAAAAKVIYQVVDQGHSLSSAL-------------PKAQSEIKPRDQALLQEICYGVLRF 50

Query: 80  KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139
              ++ +  S + +         +   ++  G+ +L     +P    ++E V    +   
Sbjct: 51  LPRLESVAQSLMDK--PLKGKQRVFHHLILVGIYQLSFMR-IPAHAAVAETVEGTKNLKG 107

Query: 140 GDEPKFINAVLDKVSRKEE 158
                 INAVL    R +E
Sbjct: 108 PKLRGLINAVLRNYQRSQE 126


>gi|254476801|ref|ZP_05090187.1| Fmu [Ruegeria sp. R11]
 gi|214031044|gb|EEB71879.1| Fmu [Ruegeria sp. R11]
          Length = 420

 Score = 42.4 bits (99), Expect = 0.021,   Method: Composition-based stats.
 Identities = 21/98 (21%), Positives = 38/98 (38%), Gaps = 10/98 (10%)

Query: 59  SVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIEC 118
                 D    + +    +   +  D ++   L +         ++ + LR G +EL  C
Sbjct: 35  DKLAPEDRARAQRLAADTLRNLERADRVLQKHLKKSTPL-----MVHNALRIGTVEL--C 87

Query: 119 HSVPVEVIISEYVCI--AHDFFYGDEPKFINAVLDKVS 154
                  +++E V I  AH   +G     +NAVL KV+
Sbjct: 88  QGGAAHGVVNEMVNIVAAHK-RHGKLKGLVNAVLRKVA 124


>gi|443991|emb|CAA54369.1| fmu [Escherichia coli K-12]
          Length = 238

 Score = 42.4 bits (99), Expect = 0.021,   Method: Composition-based stats.
 Identities = 21/133 (15%), Positives = 50/133 (37%), Gaps = 9/133 (6%)

Query: 29  QIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLIS 88
           Q ++   +   +    E  +  ++    ++      D    + +  GV+     +D LI+
Sbjct: 4   QRNLRSMAAQAVEQVVEQGQSLSNILPPLQQKVSDKDKALLQELCFGVLRTLSQLDWLIN 63

Query: 89  SCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVC--IA-HDFFYGDEPKF 145
             +    +  +    +  ++  G+ +L+    +P    ++E V   IA            
Sbjct: 64  KLMARPMTGKQ--RTVHYLIMVGLYQLLYTR-IPPHAALAETVERRIAIKR---PQLKGL 117

Query: 146 INAVLDKVSRKEE 158
           IN VL +  R++E
Sbjct: 118 INGVLRQFQRQQE 130


>gi|90413777|ref|ZP_01221765.1| Putative Sun protein [Photobacterium profundum 3TCK]
 gi|90325246|gb|EAS41743.1| Putative Sun protein [Photobacterium profundum 3TCK]
          Length = 431

 Score = 42.4 bits (99), Expect = 0.021,   Method: Composition-based stats.
 Identities = 26/139 (18%), Positives = 50/139 (35%), Gaps = 16/139 (11%)

Query: 20  RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79
           R AA Q ++Q+   G S +  +                +      D    + I +GV+  
Sbjct: 4   RAAAAQVVFQVVDQGQSLSAAL-------------PAAQQNIRERDHALLQEICYGVLRW 50

Query: 80  KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139
              +   I++ L +K        +   ++  G+ +L     +P    ++E V    D   
Sbjct: 51  LPRL-ESITTHLMDK-PLKGKQRVFHHLILVGLYQLGHMR-IPAHAAVAETVNATKDLKK 107

Query: 140 GDEPKFINAVLDKVSRKEE 158
                 INA+L    R++E
Sbjct: 108 TQLRGLINAILRNYQRQQE 126


>gi|310765566|gb|ADP10516.1| Ribosomal RNA small subunit methyltransferase B [Erwinia sp.
           Ejp617]
          Length = 441

 Score = 42.4 bits (99), Expect = 0.022,   Method: Composition-based stats.
 Identities = 18/123 (14%), Positives = 45/123 (36%), Gaps = 9/123 (7%)

Query: 39  EIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFS 98
            I    E  +  ++     +      D    + + +GV+     ++ +IS  ++      
Sbjct: 26  TIEQVVEQGQSLSNVLPAAQKSVGDKDAALLQELCYGVLRTLPQLEWIISKLMSRP---- 81

Query: 99  RLDMILCS---ILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSR 155
            +     +   ++  G+ +L+    +P    ++E V  A           IN VL +  R
Sbjct: 82  -MTGKQRALHFLIMVGLYQLMFTR-IPPHAALAETVEAAVALKRPQLKGLINGVLRQFQR 139

Query: 156 KEE 158
           +++
Sbjct: 140 QQD 142


>gi|322516391|ref|ZP_08069316.1| RNA methyltransferase Sun [Streptococcus vestibularis ATCC 49124]
 gi|322125124|gb|EFX96517.1| RNA methyltransferase Sun [Streptococcus vestibularis ATCC 49124]
          Length = 442

 Score = 42.4 bits (99), Expect = 0.022,   Method: Composition-based stats.
 Identities = 33/152 (21%), Positives = 60/152 (39%), Gaps = 20/152 (13%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           +  AR  A++ L           E+  E        +  L  +S     D      I++G
Sbjct: 8   KKTARGQALEVL----------EEVFQEGAYSNIALNAHLS-KSYLTDKDKALVTEIVYG 56

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
            + RK  +   I + + E     +L+  +  +L   + +L     +P   ++++ V IA 
Sbjct: 57  TVARKITL-EWILAHVIEDR--DKLEPWVYDLLLLSLYQLAYLDKIPAHAVVNDAVSIAK 113

Query: 136 DFFYGDEP-KFINAVLDKVSRKE-----EIKR 161
           +        K +NAVL K+S +      EIKR
Sbjct: 114 NRGNKKGAEKLVNAVLRKLSSQPLPDPSEIKR 145


>gi|237806927|ref|YP_002891367.1| sun protein [Tolumonas auensis DSM 9187]
 gi|237499188|gb|ACQ91781.1| sun protein [Tolumonas auensis DSM 9187]
          Length = 433

 Score = 42.4 bits (99), Expect = 0.024,   Method: Composition-based stats.
 Identities = 29/135 (21%), Positives = 49/135 (36%), Gaps = 15/135 (11%)

Query: 30  IDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHI----DL 85
           + I   +   I    E  +  +      + +    D    + I +G +     +    D 
Sbjct: 1   MKIRATAAKVIFQVVEQGQSLSSALPVAQQLIAAKDRALLQEICYGTLRWLNRLEFIADQ 60

Query: 86  LISSCLT-EKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDE-P 143
           L+   L  +  S   L      IL AG+ +L     +P   +++E V  A     GD   
Sbjct: 61  LLDRQLKGKHRSLHYL------IL-AGLYQLFYTR-IPPHAVLAETVN-ASGLLNGDSFR 111

Query: 144 KFINAVLDKVSRKEE 158
           K IN VL    R++E
Sbjct: 112 KLINGVLRNAQRQQE 126


>gi|326573497|gb|EGE23463.1| 16S rRNA m5C967 SAM-dependent methyltransferase [Moraxella
           catarrhalis O35E]
          Length = 448

 Score = 42.4 bits (99), Expect = 0.024,   Method: Composition-based stats.
 Identities = 15/83 (18%), Positives = 33/83 (39%), Gaps = 11/83 (13%)

Query: 85  LLISSCLTEKWSFSRLD------MI----LCSILRAGVLELIECHSVPVEVIISEYVCIA 134
            L+   L + W+ SR+        +    + + +  G+ +LI   ++P    I++ V   
Sbjct: 53  ELLLGTLRQWWALSRISESLIENPVTDQGVQAAINIGLYQLIYM-NIPEYAAINDTVEAL 111

Query: 135 HDFFYGDEPKFINAVLDKVSRKE 157
                      +NA+L K  + +
Sbjct: 112 KQLGKEYGTGLVNAILRKTQKSK 134


>gi|326560689|gb|EGE11057.1| 16S rRNA m5C967 SAM-dependent methyltransferase [Moraxella
           catarrhalis 46P47B1]
          Length = 448

 Score = 42.4 bits (99), Expect = 0.024,   Method: Composition-based stats.
 Identities = 15/83 (18%), Positives = 33/83 (39%), Gaps = 11/83 (13%)

Query: 85  LLISSCLTEKWSFSRLD------MI----LCSILRAGVLELIECHSVPVEVIISEYVCIA 134
            L+   L + W+ SR+        +    + + +  G+ +LI   ++P    I++ V   
Sbjct: 53  ELLLGTLRQWWALSRISESLIENPVTDQGVQAAINIGLYQLIYM-NIPEYAAINDTVEAL 111

Query: 135 HDFFYGDEPKFINAVLDKVSRKE 157
                      +NA+L K  + +
Sbjct: 112 KQLGKEYGTGLVNAILRKTQKSK 134


>gi|259909968|ref|YP_002650324.1| 16S rRNA methyltransferase B [Erwinia pyrifoliae Ep1/96]
 gi|224965590|emb|CAX57122.1| 16S rRNA methyltransferase B [Erwinia pyrifoliae Ep1/96]
          Length = 429

 Score = 42.4 bits (99), Expect = 0.024,   Method: Composition-based stats.
 Identities = 18/123 (14%), Positives = 45/123 (36%), Gaps = 9/123 (7%)

Query: 39  EIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFS 98
            I    E  +  ++     +      D    + + +GV+     ++ +IS  ++      
Sbjct: 14  TIEQVVEQGQSLSNVLPAAQKSVGDKDAALLQELCYGVLRTLPQLEWIISKLMSRP---- 69

Query: 99  RLDMILCS---ILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSR 155
            +     +   ++  G+ +L+    +P    ++E V  A           IN VL +  R
Sbjct: 70  -MTGKQRALHFLIMVGLYQLMFTR-IPPHAALAETVEAAVALKRPQLKGLINGVLRQFQR 127

Query: 156 KEE 158
           +++
Sbjct: 128 QQD 130


>gi|297180807|gb|ADI17013.1| tRNA and rRNA cytosine-c5-methylases [uncultured Vibrionales
           bacterium HF0010_22E23]
          Length = 426

 Score = 42.0 bits (98), Expect = 0.025,   Method: Composition-based stats.
 Identities = 26/147 (17%), Positives = 51/147 (34%), Gaps = 16/147 (10%)

Query: 20  RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79
           R  A + ++Q+   G S T ++                +      D    + I +GV+  
Sbjct: 4   RAMAAKVIFQVVDQGQSLTAVL-------------PKAQQQIADRDGALLQEICYGVLRW 50

Query: 80  KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139
              +   I+  L EK   +    +   ++  G+ +L     VP    ++E V        
Sbjct: 51  LPRL-EAITQSLMEK-PLTGKQRVFHHLILVGLYQLNYMR-VPAHAAVAETVNATKPLKK 107

Query: 140 GDEPKFINAVLDKVSRKEEIKRSGCVS 166
                 +NAVL    R+++      +S
Sbjct: 108 PQLRGLVNAVLRNYQREQDALNEKAIS 134


>gi|283769599|ref|ZP_06342495.1| putative ribosomal RNA small subunit methyltransferase B [Bulleidia
           extructa W1219]
 gi|283103867|gb|EFC05253.1| putative ribosomal RNA small subunit methyltransferase B [Bulleidia
           extructa W1219]
          Length = 404

 Score = 42.0 bits (98), Expect = 0.025,   Method: Composition-based stats.
 Identities = 18/109 (16%), Positives = 44/109 (40%), Gaps = 11/109 (10%)

Query: 55  LDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLE 114
           L ++ + +   + +   +++G +   + +       + +      +D+    +L   + +
Sbjct: 23  LSLKQLKIEGSIGFVTEVVYGTLRHYKLLQEQYKPFVKKIKKK--MDV----LLVMALYQ 76

Query: 115 LIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRSG 163
                 VP   I++  V +        E  F+NAVL K+ + E I+  G
Sbjct: 77  -HHFMKVPDYAIVNSTVELVKS----QEKGFVNAVLRKIFQSEWIEPMG 120


>gi|58040030|ref|YP_191994.1| rRNA methyltransferase RsmB [Gluconobacter oxydans 621H]
 gi|58002444|gb|AAW61338.1| rRNA methyltransferase RsmB [Gluconobacter oxydans 621H]
          Length = 447

 Score = 42.0 bits (98), Expect = 0.027,   Method: Composition-based stats.
 Identities = 21/120 (17%), Positives = 42/120 (35%), Gaps = 6/120 (5%)

Query: 39  EIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFS 98
           +I+     +R   +T LD        D      +    +     +  L+   L  +    
Sbjct: 46  DIVCGVVEHRRMLETTLDRAGAMDARDRASAHRLAATTLRHLGSMTELLQPLLRREPP-- 103

Query: 99  RLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEE 158
             + + C++L  GV +L+     P    +   V +             NAVL +V+R+ +
Sbjct: 104 --EPVRCALL-MGVAQLLH-LETPPHAAVGTIVDLLRRRGLAPFAGLANAVLRRVAREGQ 159


>gi|325294195|ref|YP_004280059.1| SUN protein [Agrobacterium sp. H13-3]
 gi|325062048|gb|ADY65739.1| SUN protein [Agrobacterium sp. H13-3]
          Length = 461

 Score = 42.0 bits (98), Expect = 0.027,   Method: Composition-based stats.
 Identities = 30/151 (19%), Positives = 57/151 (37%), Gaps = 21/151 (13%)

Query: 18  IARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTEL--DVESVYLHVDLEWFRVIIHG 75
            AR+AA + L            ++ +  +     D+E    V       D    R I++ 
Sbjct: 37  AARVAATRIL----------AAVLEKKTSLDGMLDSENGNPVYRALSLADRALVRAIVNS 86

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
            +     I+  +S  L       +    L  +L  G  +++    VP    +   V  AH
Sbjct: 87  ALRHLPRIEAALSMLLDG--PLPQGARSLHHVLVVGAAQVLH-LDVPDHSAVDLAVEQAH 143

Query: 136 DFFYGDEPKF---INAVLDKVSRKE-EIKRS 162
                   +F   +NAVL ++ R++ EI+++
Sbjct: 144 R--DPRNRRFAKLVNAVLRRLGREKAEIEKA 172


>gi|229520215|ref|ZP_04409642.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholerae TM
           11079-80]
 gi|229342809|gb|EEO07800.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholerae TM
           11079-80]
          Length = 426

 Score = 42.0 bits (98), Expect = 0.028,   Method: Composition-based stats.
 Identities = 31/139 (22%), Positives = 49/139 (35%), Gaps = 16/139 (11%)

Query: 20  RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79
           R AA  ALYQ+  +G S +  +                +      D    + I +GV+ +
Sbjct: 4   RAAAASALYQVVDLGHSLSNAL-------------PAAQQQIRPRDHALLQEICYGVLRQ 50

Query: 80  KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139
              +   IS  L EK        +   ++  G+ +L     +P    + E V    D   
Sbjct: 51  LPRL-ESISQALMEK-PLKGKQRVFHFLILVGLYQLSFMR-IPAHAAVGETVEGTQDLKG 107

Query: 140 GDEPKFINAVLDKVSRKEE 158
                 INAVL    R +E
Sbjct: 108 PRLRGLINAVLRNYQRDQE 126


>gi|229104427|ref|ZP_04235096.1| Ribosomal RNA small subunit methyltransferase B [Bacillus cereus
           Rock3-28]
 gi|228679125|gb|EEL33333.1| Ribosomal RNA small subunit methyltransferase B [Bacillus cereus
           Rock3-28]
          Length = 354

 Score = 42.0 bits (98), Expect = 0.028,   Method: Composition-based stats.
 Identities = 10/35 (28%), Positives = 14/35 (40%)

Query: 122 PVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRK 156
           P    I E V IA    +      +N VL  + R+
Sbjct: 2   PERAAIHEAVEIAKRRGHKGISGMVNGVLRSIQRE 36


>gi|209883490|ref|YP_002287347.1| SUN protein [Oligotropha carboxidovorans OM5]
 gi|209871686|gb|ACI91482.1| SUN protein [Oligotropha carboxidovorans OM5]
          Length = 446

 Score = 42.0 bits (98), Expect = 0.028,   Method: Composition-based stats.
 Identities = 24/129 (18%), Positives = 45/129 (34%), Gaps = 14/129 (10%)

Query: 37  TTEIISEYETYRFCADTELDVESVYL------HVDLEWFRVIIHGVMDRKQHIDLLISSC 90
             +II      R   D +L+  + +         D    R ++  V+ R+  +  L+S  
Sbjct: 21  AADIIDGVLHKRRTLDDQLEGAAQHPALKSLSDRDRALMRRLVATVLRRRGTLAYLLSRL 80

Query: 91  LTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKF---IN 147
           L              S L  G  +++    VP    +   V +          K+   +N
Sbjct: 81  LDRGVPSD--APRAQSALMIGAAQILWM-DVPDHAAVDLSVRLVQA--DRRAAKYAGLVN 135

Query: 148 AVLDKVSRK 156
           AVL + +R+
Sbjct: 136 AVLRRCARE 144


>gi|229098334|ref|ZP_04229281.1| Ribosomal RNA small subunit methyltransferase B [Bacillus cereus
           Rock3-29]
 gi|229117351|ref|ZP_04246729.1| Ribosomal RNA small subunit methyltransferase B [Bacillus cereus
           Rock1-3]
 gi|228666251|gb|EEL21715.1| Ribosomal RNA small subunit methyltransferase B [Bacillus cereus
           Rock1-3]
 gi|228685232|gb|EEL39163.1| Ribosomal RNA small subunit methyltransferase B [Bacillus cereus
           Rock3-29]
          Length = 354

 Score = 42.0 bits (98), Expect = 0.028,   Method: Composition-based stats.
 Identities = 10/35 (28%), Positives = 14/35 (40%)

Query: 122 PVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRK 156
           P    I E V IA    +      +N VL  + R+
Sbjct: 2   PERAAIHEAVEIAKRRGHKGISGMVNGVLRSIQRE 36


>gi|226329514|ref|ZP_03805032.1| hypothetical protein PROPEN_03423 [Proteus penneri ATCC 35198]
 gi|225202700|gb|EEG85054.1| hypothetical protein PROPEN_03423 [Proteus penneri ATCC 35198]
          Length = 194

 Score = 42.0 bits (98), Expect = 0.028,   Method: Composition-based stats.
 Identities = 29/150 (19%), Positives = 56/150 (37%), Gaps = 19/150 (12%)

Query: 10  LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF 69
           +K S+     R  A +A+ Q+   G S + +I E              +      D    
Sbjct: 1   MKTSYN---LRSIAAKAINQVLDQGLSLSTVIPEL-------------QKNISDKDKALL 44

Query: 70  RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISE 129
           + I  GV+     ++ +I   + +         IL  ++  G+ +L+    +P    ++E
Sbjct: 45  QEICFGVLRTLPQLEWIIQQLMDK--PLKGKQRILHYLIMVGLYQLLYTR-IPAHAALAE 101

Query: 130 YVCIAHDFFYGDEPKFINAVLDKVSRKEEI 159
            V  A           IN VL +  R+++I
Sbjct: 102 TVNGAVALKKPQLKGLINGVLRQFQRQQDI 131


>gi|115522058|ref|YP_778969.1| sun protein [Rhodopseudomonas palustris BisA53]
 gi|115516005|gb|ABJ03989.1| sun protein [Rhodopseudomonas palustris BisA53]
          Length = 449

 Score = 42.0 bits (98), Expect = 0.029,   Method: Composition-based stats.
 Identities = 21/131 (16%), Positives = 45/131 (34%), Gaps = 14/131 (10%)

Query: 37  TTEIISEYETYRFCADTELDVESVYL------HVDLEWFRVIIHGVMDRKQHIDLLISSC 90
             +I+      R   D +LD  + +         D    R ++  ++ +   +  ++S  
Sbjct: 21  AADILDGVLHKRRMLDDQLDGPAAHPGLKTLSDRDRALMRRLVATILRKLGTLGHVLSRL 80

Query: 91  LTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKF---IN 147
           L              S L  G  +++    VP    +   V +          K+   +N
Sbjct: 81  LDRGVPTD--APRAQSALLIGAAQILWM-EVPDHAAVDLSVRLVQ--SDRRAAKYAGLVN 135

Query: 148 AVLDKVSRKEE 158
           AVL + +R+ +
Sbjct: 136 AVLRRCAREGQ 146


>gi|222150167|ref|YP_002551124.1| Sun protein [Agrobacterium vitis S4]
 gi|221737149|gb|ACM38112.1| Sun protein [Agrobacterium vitis S4]
          Length = 493

 Score = 42.0 bits (98), Expect = 0.029,   Method: Composition-based stats.
 Identities = 18/114 (15%), Positives = 40/114 (35%), Gaps = 14/114 (12%)

Query: 52  DTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSI---L 108
           D      +     D    R I++  +     I+ +++  L        L     ++   L
Sbjct: 79  DHGNPAYAALSEADRGLVRAILNTSLRFLPRIEAMLARLLDAP-----LPDGARALYHSL 133

Query: 109 RAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKF---INAVLDKVSRKEEI 159
                +++    VP    +   V  A+        +F   +NAVL ++ R+++ 
Sbjct: 134 IVAAAQMVY-LDVPDHSAVDLAVEQANR--DPRSRRFAKLVNAVLRRLGREKQA 184


>gi|312863023|ref|ZP_07723261.1| ribosomal RNA small subunit methyltransferase B [Streptococcus
           vestibularis F0396]
 gi|311100559|gb|EFQ58764.1| ribosomal RNA small subunit methyltransferase B [Streptococcus
           vestibularis F0396]
          Length = 442

 Score = 41.6 bits (97), Expect = 0.032,   Method: Composition-based stats.
 Identities = 29/140 (20%), Positives = 55/140 (39%), Gaps = 15/140 (10%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           +  AR  A++ L           E+  E        +  L  +S     D      I++G
Sbjct: 8   KKTARGQALEVL----------EEVFQEGAYSNIALNAHLS-KSYLTDKDKALVTEIVYG 56

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
            + RK  +   I + + E     +L+  +  +L   + +L     +P   ++++ V IA 
Sbjct: 57  TVARKITL-EWILAHVIEDR--DKLEPWVYDLLLLSLYQLAYLDKIPAHAVVNDAVSIAK 113

Query: 136 DFFYGDEP-KFINAVLDKVS 154
           +        K +NAVL K+S
Sbjct: 114 NRGNKKGAEKLVNAVLRKLS 133


>gi|218887132|ref|YP_002436453.1| NusB/RsmB/TIM44 [Desulfovibrio vulgaris str. 'Miyazaki F']
 gi|218758086|gb|ACL08985.1| NusB/RsmB/TIM44 [Desulfovibrio vulgaris str. 'Miyazaki F']
          Length = 530

 Score = 41.6 bits (97), Expect = 0.033,   Method: Composition-based stats.
 Identities = 22/101 (21%), Positives = 36/101 (35%), Gaps = 5/101 (4%)

Query: 65  DLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVE 124
           D      +++G +  +  I  L+   LT      +L       L     E++    +P  
Sbjct: 93  DAALATELVYGYLRSEIRISWLLRRFLTA---PEKLPQEALLTLGVAAHEIVHLDRIPDY 149

Query: 125 VIISEYVC-IAHDFFYGDEPKFINAVLDKVSRKEEIKRSGC 164
             +   V  I   F  G   K  NAVL  V+R  +  R+  
Sbjct: 150 AAVDWAVTHIRQRFGPGLG-KLANAVLRNVARLGDDARNAE 189


>gi|27375690|ref|NP_767219.1| SUN protein [Bradyrhizobium japonicum USDA 110]
 gi|27348828|dbj|BAC45844.1| SUN protein [Bradyrhizobium japonicum USDA 110]
          Length = 448

 Score = 41.6 bits (97), Expect = 0.033,   Method: Composition-based stats.
 Identities = 21/132 (15%), Positives = 44/132 (33%), Gaps = 14/132 (10%)

Query: 37  TTEIISEYETYRFCADTELDVESVYL------HVDLEWFRVIIHGVMDRKQHIDLLISSC 90
             +I+          D +LD    +         D    R ++  V+ R   +  ++S  
Sbjct: 21  AADIVDGVLHKHRTLDDQLDGSGAHPGLKTLADRDRALMRRLVATVLRRLGTLGHVLSRL 80

Query: 91  LTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKF---IN 147
           L +            S L  G  +++    VP    +   V +          ++   +N
Sbjct: 81  LDKGIPSE--APRAQSALLIGAAQILWM-DVPDHAAVDLSVRLVQ--SDRRAARYAGLVN 135

Query: 148 AVLDKVSRKEEI 159
           AVL + +R+ + 
Sbjct: 136 AVLRRCAREGQA 147


>gi|197106963|ref|YP_002132340.1| rRNA methyltransferase RsmB [Phenylobacterium zucineum HLK1]
 gi|196480383|gb|ACG79911.1| rRNA methyltransferase RsmB [Phenylobacterium zucineum HLK1]
          Length = 598

 Score = 41.6 bits (97), Expect = 0.034,   Method: Composition-based stats.
 Identities = 21/79 (26%), Positives = 32/79 (40%), Gaps = 7/79 (8%)

Query: 79  RKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFF 138
               ID  + + L  K    R+  +    LR G  +L+     P    +S  V +A    
Sbjct: 231 HLGPIDAALQARL-RKPPPDRIVQV----LRLGAAQLL-VLKTPAHAAVSATVDLAASQK 284

Query: 139 YGDEPK-FINAVLDKVSRK 156
            G   K  +NAVL  +SR+
Sbjct: 285 GGQAFKGLVNAVLRGLSRE 303


>gi|295096932|emb|CBK86022.1| 16S rRNA m(5)C-967 methyltransferase [Enterobacter cloacae subsp.
           cloacae NCTC 9394]
          Length = 420

 Score = 41.6 bits (97), Expect = 0.036,   Method: Composition-based stats.
 Identities = 18/127 (14%), Positives = 49/127 (38%), Gaps = 6/127 (4%)

Query: 32  IIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCL 91
           +   +  ++I + ++    ++    ++      D    + +  GV+     ++ LI+  +
Sbjct: 1   MAAQAVEQVIEQGQS---LSNVLPPLQQKVSDKDKALLQELCFGVLRTLSQLEWLINKLM 57

Query: 92  TEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLD 151
           +     S     +  ++  G  +L+    +P    ++E V  A           IN VL 
Sbjct: 58  SR--PMSGKQRTVHYLIMVGFYQLLHTR-IPPHAALAETVEGAVSIKRPQLKGLINGVLR 114

Query: 152 KVSRKEE 158
           +  R+++
Sbjct: 115 QFQRQQD 121


>gi|330993136|ref|ZP_08317074.1| Ribosomal RNA small subunit methyltransferase B [Gluconacetobacter
           sp. SXCC-1]
 gi|329759906|gb|EGG76412.1| Ribosomal RNA small subunit methyltransferase B [Gluconacetobacter
           sp. SXCC-1]
          Length = 395

 Score = 41.6 bits (97), Expect = 0.036,   Method: Composition-based stats.
 Identities = 15/90 (16%), Positives = 33/90 (36%), Gaps = 6/90 (6%)

Query: 65  DLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVE 124
           D      +   V+      + +++  L  +      + +   +L  GV +L+     P  
Sbjct: 19  DRAAAHRLAATVLRHMGTANEVLAPFLKREPP----EPV-RVVLLIGVAQLLF-LDTPPH 72

Query: 125 VIISEYVCIAHDFFYGDEPKFINAVLDKVS 154
             ++  V +A           +NAVL +V+
Sbjct: 73  AAVATSVALARRRGLVPFAGLVNAVLRRVA 102


>gi|298292785|ref|YP_003694724.1| sun protein [Starkeya novella DSM 506]
 gi|296929296|gb|ADH90105.1| sun protein [Starkeya novella DSM 506]
          Length = 446

 Score = 41.6 bits (97), Expect = 0.036,   Method: Composition-based stats.
 Identities = 22/119 (18%), Positives = 43/119 (36%), Gaps = 8/119 (6%)

Query: 44  YETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMI 103
            E  R   +    +       D    R+I    + +   +  LI S L       +   +
Sbjct: 37  LEKGRPLEEALERLTRELDERDRGLARMIAATALRKFGTLRALIGSLLERGLP-EKAGRV 95

Query: 104 LCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKF---INAVLDKVSRKEEI 159
             ++L  G  +++    VP    +   V +A +        F   +NAVL +V+R+ + 
Sbjct: 96  E-TLLVTGAAQILFM-DVPDHAAVDTSVALAAE--SPASAGFKGLVNAVLRRVAREGKA 150


>gi|283788076|ref|YP_003367941.1| ribosomal RNA small subunit methyltransferase B [Citrobacter
           rodentium ICC168]
 gi|282951530|emb|CBG91229.1| ribosomal RNA small subunit methyltransferase B [Citrobacter
           rodentium ICC168]
          Length = 429

 Score = 41.6 bits (97), Expect = 0.036,   Method: Composition-based stats.
 Identities = 18/128 (14%), Positives = 47/128 (36%), Gaps = 6/128 (4%)

Query: 32  IIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCL 91
           I   +  +++ +  +    ++    ++      D    + +  GV+     ++ LI   +
Sbjct: 10  IAAQAVEQVVEQGHS---LSNVLPPLQQKVSDKDKALLQELCFGVLRTLSQLEWLIGKLM 66

Query: 92  TEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLD 151
           +   +  +    L  ++  G  +L+    +P    ++E V  A           IN VL 
Sbjct: 67  SRPMTGKQ--RTLHYLIMVGFYQLLYTR-IPPHAALAETVEGAVAIKRPQLKGLINGVLR 123

Query: 152 KVSRKEEI 159
           +  R ++ 
Sbjct: 124 QFQRNQDA 131


>gi|163734256|ref|ZP_02141696.1| rRNA methyltransferase RsmB [Roseobacter litoralis Och 149]
 gi|161392264|gb|EDQ16593.1| rRNA methyltransferase RsmB [Roseobacter litoralis Och 149]
          Length = 423

 Score = 41.6 bits (97), Expect = 0.036,   Method: Composition-based stats.
 Identities = 16/95 (16%), Positives = 32/95 (33%), Gaps = 12/95 (12%)

Query: 63  HVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVP 122
             D      +    +   +  D ++   L++          + + LR G  EL  C    
Sbjct: 40  PEDRARAARLAQDTLRGLERADRILQKHLSKYPPL-----TVRNALRVGAFEL--CTGTA 92

Query: 123 VEVIISEYVCIA---HDFFYGDEPKFINAVLDKVS 154
              +++  V +      + +       NAVL KV+
Sbjct: 93  AHGVVNAMVELVSRHKHYSHLK--GLTNAVLRKVA 125


>gi|126730443|ref|ZP_01746254.1| ribosomal RNA small subunit methyltransferase B, putative
           [Sagittula stellata E-37]
 gi|126709176|gb|EBA08231.1| ribosomal RNA small subunit methyltransferase B, putative
           [Sagittula stellata E-37]
          Length = 413

 Score = 41.6 bits (97), Expect = 0.037,   Method: Composition-based stats.
 Identities = 34/139 (24%), Positives = 52/139 (37%), Gaps = 23/139 (16%)

Query: 17  GIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGV 76
             ARLAAV  L   D+       ++ ++        +E D        D    + +   V
Sbjct: 5   SPARLAAVDLL---DM-------VLVQHRPL-----SETDRLDRLAAPDRAAAQRLATEV 49

Query: 77  MDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHD 136
           +   +  D ++   L  K    R+     +ILR G  EL  C       ++S+ V IA  
Sbjct: 50  LRGLERADRVLKPHL-RKAPAGRV----MNILRLGATEL--CTGGAAHGVVSDCVEIAAR 102

Query: 137 FFYGDEPK-FINAVLDKVS 154
                  K   NAVL KV+
Sbjct: 103 GKRTQGAKGLANAVLRKVA 121


>gi|34499717|ref|NP_903932.1| sun protein [Chromobacterium violaceum ATCC 12472]
 gi|34105568|gb|AAQ61922.1| probable sun-like protein [Chromobacterium violaceum ATCC 12472]
          Length = 416

 Score = 41.6 bits (97), Expect = 0.038,   Method: Composition-based stats.
 Identities = 21/134 (15%), Positives = 43/134 (32%), Gaps = 11/134 (8%)

Query: 28  YQIDIIGCSTTEIISEYETYRFCADTELDVE---SVYLHVDLEWFRVIIHGVMDRKQHID 84
           YQI  +     EI++  E      D   DV+         +    + + +G +     + 
Sbjct: 2   YQIQQL---AAEILARIEAGTTLTDALADVQRQAGKLTPAERGALQDLSYGSLRHLGVLR 58

Query: 85  LLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPK 144
             +   +           +   +L   + +L    +    V+  E V +A     G    
Sbjct: 59  HCLRQLVPH--PLPE-PQVER-LLLIALYQLQYTRAAQYAVV-HEAVTLAGMMARGKFKA 113

Query: 145 FINAVLDKVSRKEE 158
            +N VL    R+ +
Sbjct: 114 LVNGVLRNFQRRRD 127


>gi|227354905|ref|ZP_03839319.1| ribosomal RNA small subunit methyltransferase B [Proteus mirabilis
           ATCC 29906]
 gi|227164987|gb|EEI49826.1| ribosomal RNA small subunit methyltransferase B [Proteus mirabilis
           ATCC 29906]
          Length = 422

 Score = 41.6 bits (97), Expect = 0.038,   Method: Composition-based stats.
 Identities = 30/151 (19%), Positives = 55/151 (36%), Gaps = 21/151 (13%)

Query: 10  LKLSHR-RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEW 68
           +K S+  R IA  A  Q L Q    G S + +I E              +      D   
Sbjct: 1   MKTSYNLRSIAAKAIAQVLDQ----GLSLSSVIPEL-------------QKNISDKDKAL 43

Query: 69  FRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIIS 128
            + +  G +     ++ +I   + +         IL  ++  G+ +L+    VP    ++
Sbjct: 44  LQELCFGTLRTLPQLEWIIQQLMDK--PLKGKQRILHYLIMVGLYQLLYTR-VPAHAALA 100

Query: 129 EYVCIAHDFFYGDEPKFINAVLDKVSRKEEI 159
           E V  A           IN VL +  R++++
Sbjct: 101 ETVNGAIALKKPQLKGLINGVLRQFQRQQDV 131


>gi|197287099|ref|YP_002152971.1| 16S rRNA methyltransferase B [Proteus mirabilis HI4320]
 gi|224493257|sp|B4F1L5|RSMB_PROMH RecName: Full=Ribosomal RNA small subunit methyltransferase B;
           AltName: Full=16S rRNA m5C967 methyltransferase;
           AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
           rsmB
 gi|194684586|emb|CAR46442.1| ribosomal RNA small subunit methyltransferase B [Proteus mirabilis
           HI4320]
          Length = 422

 Score = 41.6 bits (97), Expect = 0.038,   Method: Composition-based stats.
 Identities = 30/151 (19%), Positives = 55/151 (36%), Gaps = 21/151 (13%)

Query: 10  LKLSHR-RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEW 68
           +K S+  R IA  A  Q L Q    G S + +I E              +      D   
Sbjct: 1   MKTSYNLRSIAAKAIAQVLDQ----GLSLSSVIPEL-------------QKNISDKDKAL 43

Query: 69  FRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIIS 128
            + +  G +     ++ +I   + +         IL  ++  G+ +L+    VP    ++
Sbjct: 44  LQELCFGTLRTLPQLEWIIQQLMDK--PLKGKQRILHYLIMVGLYQLLYTR-VPAHAALA 100

Query: 129 EYVCIAHDFFYGDEPKFINAVLDKVSRKEEI 159
           E V  A           IN VL +  R++++
Sbjct: 101 ETVNGAIALKKPQLKGLINGVLRQFQRQQDV 131


>gi|86139371|ref|ZP_01057940.1| ribosomal RNA small subunit methyltransferase B, putative
           [Roseobacter sp. MED193]
 gi|85823874|gb|EAQ44080.1| ribosomal RNA small subunit methyltransferase B, putative
           [Roseobacter sp. MED193]
          Length = 420

 Score = 41.6 bits (97), Expect = 0.038,   Method: Composition-based stats.
 Identities = 19/106 (17%), Positives = 37/106 (34%), Gaps = 14/106 (13%)

Query: 59  SVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIE- 117
                 D    + +    +   +  D ++   L +          + ++LR G +EL   
Sbjct: 35  ERLTPEDRARAQRLTLQTLRSLERADRVLQKHLKKATPL-----TVQNVLRLGTVELCHG 89

Query: 118 ---CHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIK 160
                 V   V I     I+    +G     +NAVL KV+ + + +
Sbjct: 90  AAAHGVVNDMVAI-----ISKHRRHGKLKGLVNAVLRKVAEQGQAE 130


>gi|92115829|ref|YP_575558.1| Fmu (Sun) [Nitrobacter hamburgensis X14]
 gi|91798723|gb|ABE61098.1| Fmu (Sun) [Nitrobacter hamburgensis X14]
          Length = 450

 Score = 41.6 bits (97), Expect = 0.040,   Method: Composition-based stats.
 Identities = 20/131 (15%), Positives = 44/131 (33%), Gaps = 14/131 (10%)

Query: 37  TTEIISEYETYRFCADTELDVESVYL------HVDLEWFRVIIHGVMDRKQHIDLLISSC 90
             +I+          D +L+  + +         D    R ++  ++ R   +  ++S  
Sbjct: 21  AADILDGVLHKHRTLDEQLEGAAAHPGLKALADRDRALMRRLVATILRRLGTLGHVLSRL 80

Query: 91  LTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKF---IN 147
           L              S L  G  +++    VP    +   V +          K+   +N
Sbjct: 81  LDRGIPTD--APRAQSALLIGAAQILWM-DVPDHAAVDLSVRLVQ--SDRRAAKYAGLVN 135

Query: 148 AVLDKVSRKEE 158
           AVL + +R+ +
Sbjct: 136 AVLRRCAREGQ 146


>gi|319744301|gb|EFV96665.1| RNA methyltransferase Sun [Streptococcus agalactiae ATCC 13813]
          Length = 440

 Score = 41.6 bits (97), Expect = 0.042,   Method: Composition-based stats.
 Identities = 30/155 (19%), Positives = 53/155 (34%), Gaps = 41/155 (26%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           +  AR  A+  L           E + +   Y   A  +   +S     D      I++G
Sbjct: 6   KKSARGLALMTL-----------EEVFDKGAYSNIALNKSLKKSRLSDKDRALVTEIVYG 54

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLEL-------------IECHSVP 122
            + RK  ++  +S  +           +    L     EL             +   ++P
Sbjct: 55  TVARKITLEWYLSHFI-----------VDRDKL-----ELWVYHLLLLSLYQLLYLDNIP 98

Query: 123 VEVIISEYVCIAHDFFYGDEP-KFINAVLDKVSRK 156
              I+++ V IA +        K INAVL +VS +
Sbjct: 99  DHAIVNDAVTIAKNRGNKKGAEKLINAVLRRVSSE 133


>gi|77410664|ref|ZP_00787024.1| sun protein [Streptococcus agalactiae CJB111]
 gi|77163379|gb|EAO74330.1| sun protein [Streptococcus agalactiae CJB111]
          Length = 440

 Score = 41.2 bits (96), Expect = 0.043,   Method: Composition-based stats.
 Identities = 30/155 (19%), Positives = 53/155 (34%), Gaps = 41/155 (26%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           +  AR  A+  L           E + +   Y   A  +   +S     D      I++G
Sbjct: 6   KKSARGLALMTL-----------EEVFDKGAYSNIALNKSLKKSRLSDKDRALVTEIVYG 54

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLEL-------------IECHSVP 122
            + RK  ++  +S  +           +    L     EL             +   ++P
Sbjct: 55  TVARKITLEWYLSHFI-----------VDRDKL-----ELWVYHLLLLSLYQLLYLDNIP 98

Query: 123 VEVIISEYVCIAHDFFYGDEP-KFINAVLDKVSRK 156
              I+++ V IA +        K INAVL +VS +
Sbjct: 99  DHAIVNDAVTIAKNRGNKKGAEKLINAVLRRVSSE 133


>gi|255318029|ref|ZP_05359274.1| ribosomal RNA small subunit methyltransferase B [Acinetobacter
           radioresistens SK82]
 gi|262380625|ref|ZP_06073779.1| ribosomal RNA small subunit methyltransferase B [Acinetobacter
           radioresistens SH164]
 gi|255304852|gb|EET84024.1| ribosomal RNA small subunit methyltransferase B [Acinetobacter
           radioresistens SK82]
 gi|262298071|gb|EEY85986.1| ribosomal RNA small subunit methyltransferase B [Acinetobacter
           radioresistens SH164]
          Length = 435

 Score = 41.2 bits (96), Expect = 0.043,   Method: Composition-based stats.
 Identities = 18/100 (18%), Positives = 41/100 (41%), Gaps = 5/100 (5%)

Query: 59  SVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIEC 118
           +     D   F  ++ G + +   +  L    LT+    +  + ++ + L  G+ +++ C
Sbjct: 39  NQVADRDRALFHELLLGTLRQWFALKSLALPLLTK--PLN--NPVVETCLYLGLYQVL-C 93

Query: 119 HSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEE 158
             +     ISE V       +      +NA+L + +R+ E
Sbjct: 94  TRIAPHAAISETVTATKQLGFHPLSGVVNAILRRATRETE 133


>gi|22536500|ref|NP_687351.1| sun protein [Streptococcus agalactiae 2603V/R]
 gi|25010379|ref|NP_734774.1| sun protein [Streptococcus agalactiae NEM316]
 gi|76787603|ref|YP_329039.1| sun protein [Streptococcus agalactiae A909]
 gi|77404948|ref|ZP_00782049.1| sun protein [Streptococcus agalactiae H36B]
 gi|22533332|gb|AAM99223.1|AE014206_3 sun protein [Streptococcus agalactiae 2603V/R]
 gi|23094731|emb|CAD45950.1| unknown [Streptococcus agalactiae NEM316]
 gi|76562660|gb|ABA45244.1| sun protein [Streptococcus agalactiae A909]
 gi|77176387|gb|EAO79155.1| sun protein [Streptococcus agalactiae H36B]
          Length = 440

 Score = 41.2 bits (96), Expect = 0.045,   Method: Composition-based stats.
 Identities = 30/155 (19%), Positives = 53/155 (34%), Gaps = 41/155 (26%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           +  AR  A+  L           E + +   Y   A  +   +S     D      I++G
Sbjct: 6   KKSARGLALMTL-----------EEVFDKGAYSNIALNKSLKKSRLSDKDRALVTEIVYG 54

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLEL-------------IECHSVP 122
            + RK  ++  +S  +           +    L     EL             +   ++P
Sbjct: 55  TVARKITLEWYLSHFI-----------VDRDKL-----ELWVYHLLLLSLYQLLYLDNIP 98

Query: 123 VEVIISEYVCIAHDFFYGDEP-KFINAVLDKVSRK 156
              I+++ V IA +        K INAVL +VS +
Sbjct: 99  DHAIVNDAVTIAKNRGNKKGAEKLINAVLRRVSSE 133


>gi|332873408|ref|ZP_08441362.1| ribosomal RNA small subunit methyltransferase B [Acinetobacter
           baumannii 6014059]
 gi|332738471|gb|EGJ69344.1| ribosomal RNA small subunit methyltransferase B [Acinetobacter
           baumannii 6014059]
          Length = 434

 Score = 41.2 bits (96), Expect = 0.047,   Method: Composition-based stats.
 Identities = 18/109 (16%), Positives = 42/109 (38%), Gaps = 5/109 (4%)

Query: 59  SVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIEC 118
           +     D   F  ++ G + +   +  +    L++    +  +  + + L  G+ +++ C
Sbjct: 39  NQVAERDRALFHELVLGTLRQWFALKSISLPLLSK--PLN--NETVETCLYVGLYQVL-C 93

Query: 119 HSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRSGCVSA 167
             +     ISE V       +      +NA+L + +R+ E    G   A
Sbjct: 94  TRIAAHAAISETVDATKQLGFPALSGIVNAILRRATRETEDFEQGLQQA 142


>gi|193078768|gb|ABO13846.2| 16S rRNA m5C967 SAM-dependent methyltransferase [Acinetobacter
           baumannii ATCC 17978]
          Length = 434

 Score = 41.2 bits (96), Expect = 0.048,   Method: Composition-based stats.
 Identities = 18/109 (16%), Positives = 42/109 (38%), Gaps = 5/109 (4%)

Query: 59  SVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIEC 118
           +     D   F  ++ G + +   +  +    L++    +  +  + + L  G+ +++ C
Sbjct: 39  NQVAERDRALFHELVLGTLRQWFALKSISLPLLSK--PLN--NETVETCLYVGLYQVL-C 93

Query: 119 HSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRSGCVSA 167
             +     ISE V       +      +NA+L + +R+ E    G   A
Sbjct: 94  TRIAAHAAISETVDATKQLGFPALSGIVNAILRRATRETEDFEQGLQQA 142


>gi|25028274|ref|NP_738328.1| hypothetical protein CE1718 [Corynebacterium efficiens YS-314]
 gi|259507332|ref|ZP_05750232.1| RNA methyltransferase Sun [Corynebacterium efficiens YS-314]
 gi|23493558|dbj|BAC18528.1| conserved hypothetical protein [Corynebacterium efficiens YS-314]
 gi|259165043|gb|EEW49597.1| RNA methyltransferase Sun [Corynebacterium efficiens YS-314]
          Length = 490

 Score = 41.2 bits (96), Expect = 0.048,   Method: Composition-based stats.
 Identities = 20/114 (17%), Positives = 44/114 (38%), Gaps = 15/114 (13%)

Query: 65  DLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVE 124
           D  +   I +G +     +D +ISS          +D  +  +LR G  +++    V   
Sbjct: 90  DAGFATEITYGTLRNLGLLDAVISSA--ANRPVKDIDPEVLDVLRIGAYQVLFTR-VEDH 146

Query: 125 VIISEYVCIA---HDFFYGDEPKFINAVLDKVSRK------EEIKRSGCVSAIT 169
             +   V +      F   +   F NAV+  ++R       ++++  G ++ + 
Sbjct: 147 AAVDTTVKMVGGLKKF---NATGFANAVMRTITRTPAEQWLDKLEPEGEIARVA 197


>gi|149910330|ref|ZP_01898973.1| Putative Sun protein [Moritella sp. PE36]
 gi|149806578|gb|EDM66546.1| Putative Sun protein [Moritella sp. PE36]
          Length = 431

 Score = 41.2 bits (96), Expect = 0.051,   Method: Composition-based stats.
 Identities = 26/139 (18%), Positives = 49/139 (35%), Gaps = 16/139 (11%)

Query: 20  RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79
           R +A + LYQ+   G S T  +                + +    D    + I +GV+  
Sbjct: 4   RASAAKVLYQVVDKGQSLTTAL-------------PIAQQLLPAKDRALLQEICYGVLRW 50

Query: 80  KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139
              +   +S  L  K    +   +   IL  G+ +L     +P    ++E V        
Sbjct: 51  LPRL-EFMSRQLMSKPLIGKQRPVHFLIL-VGLYQLKYMR-IPAHAAVAETVNAIKVLKS 107

Query: 140 GDEPKFINAVLDKVSRKEE 158
                 +NA+L    R+++
Sbjct: 108 PKLSGLVNAILRNYQRQQD 126


>gi|284045174|ref|YP_003395514.1| sun protein [Conexibacter woesei DSM 14684]
 gi|283949395|gb|ADB52139.1| sun protein [Conexibacter woesei DSM 14684]
          Length = 444

 Score = 41.2 bits (96), Expect = 0.051,   Method: Composition-based stats.
 Identities = 26/123 (21%), Positives = 50/123 (40%), Gaps = 6/123 (4%)

Query: 37  TTEIISEYETYRFCADTELDVESVYLHVDL---EWFRVIIHGVMDRKQHIDLLISSCLTE 93
              ++   E+    AD  L  E+    +D     +   +  G + R++ +D +I      
Sbjct: 15  AAAVLRRVESDGAYADRALAGEARRAGLDARDHAFAMALAFGAVQRRRTLDHVIERLARR 74

Query: 94  KWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKV 153
                +LD  +   LR G+L+L+    V     + + V +A         K +NAVL + 
Sbjct: 75  --PVGQLDPPVRDALRLGLLQLLFLGGVAPHAAVDQSVELAKAAGGP-GYKLVNAVLRRG 131

Query: 154 SRK 156
           +R+
Sbjct: 132 ARE 134


>gi|260553856|ref|ZP_05826124.1| 16S rRNA m5C967 SAM-dependent methyltransferase [Acinetobacter sp.
           RUH2624]
 gi|260404976|gb|EEW98478.1| 16S rRNA m5C967 SAM-dependent methyltransferase [Acinetobacter sp.
           RUH2624]
          Length = 434

 Score = 41.2 bits (96), Expect = 0.051,   Method: Composition-based stats.
 Identities = 18/109 (16%), Positives = 43/109 (39%), Gaps = 5/109 (4%)

Query: 59  SVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIEC 118
           +     D   F  ++ G + +   +  +    L++    +  +  + + L  G+ +++ C
Sbjct: 39  NQVAERDRALFHELVLGTLRQWFALKSISLPLLSK--PLN--NETVETCLYVGLYQVL-C 93

Query: 119 HSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRSGCVSA 167
             +     ISE V       +      +NA+L + +R+ E  + G   A
Sbjct: 94  TRIAAHAAISETVDATKQLGFPALSGIVNAILRRATRETEDFQQGLQQA 142


>gi|126643464|ref|YP_001086448.1| 16S rRNA m5C967 SAM-dependent methyltransferase [Acinetobacter
           baumannii ATCC 17978]
          Length = 405

 Score = 41.2 bits (96), Expect = 0.052,   Method: Composition-based stats.
 Identities = 18/109 (16%), Positives = 42/109 (38%), Gaps = 5/109 (4%)

Query: 59  SVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIEC 118
           +     D   F  ++ G + +   +  +    L++    +  +  + + L  G+ +++ C
Sbjct: 10  NQVAERDRALFHELVLGTLRQWFALKSISLPLLSK--PLN--NETVETCLYVGLYQVL-C 64

Query: 119 HSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRSGCVSA 167
             +     ISE V       +      +NA+L + +R+ E    G   A
Sbjct: 65  TRIAAHAAISETVDATKQLGFPALSGIVNAILRRATRETEDFEQGLQQA 113


>gi|37681411|ref|NP_936020.1| sun protein [Vibrio vulnificus YJ016]
 gi|320154882|ref|YP_004187261.1| ribosomal RNA small subunit methyltransferase B [Vibrio vulnificus
           MO6-24/O]
 gi|46396771|sp|Q7MGK4|RSMB_VIBVY RecName: Full=Ribosomal RNA small subunit methyltransferase B;
           AltName: Full=16S rRNA m5C967 methyltransferase;
           AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
           rsmB
 gi|37200163|dbj|BAC95991.1| sun protein [Vibrio vulnificus YJ016]
 gi|319930194|gb|ADV85058.1| ribosomal RNA small subunit methyltransferase B [Vibrio vulnificus
           MO6-24/O]
          Length = 426

 Score = 41.2 bits (96), Expect = 0.053,   Method: Composition-based stats.
 Identities = 24/140 (17%), Positives = 46/140 (32%), Gaps = 16/140 (11%)

Query: 20  RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79
           R AA   LYQ+   G S +  + E              +      D    + I +G +  
Sbjct: 4   RAAAANVLYQVVDRGNSLSTALPE-------------AQQSIRPRDHALLQEICYGALRY 50

Query: 80  KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139
              ++ +    + +         +   ++  G+ +L     +P    + E V  A     
Sbjct: 51  LPRLESIAGKLMDK--PLKGKQRVFHHLILVGLYQLGHMR-IPAHAAVGETVEGAQALKG 107

Query: 140 GDEPKFINAVLDKVSRKEEI 159
                 INAVL    R+++ 
Sbjct: 108 PRLRGLINAVLRNYQREQQA 127


>gi|148654179|ref|YP_001281272.1| Fmu (Sun) domain-containing protein [Psychrobacter sp. PRwf-1]
 gi|148573263|gb|ABQ95322.1| Fmu (Sun) domain protein [Psychrobacter sp. PRwf-1]
          Length = 528

 Score = 41.2 bits (96), Expect = 0.054,   Method: Composition-based stats.
 Identities = 17/94 (18%), Positives = 36/94 (38%), Gaps = 5/94 (5%)

Query: 65  DLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVE 124
           D  +   ++   +        L+ S L +      +++   + ++ G+ +L+   +V   
Sbjct: 46  DKGFAHALLLTTLRHWHATARLLDS-LADN-PIDEIEV--RTTIQLGITQLLY-LNVADH 100

Query: 125 VIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEE 158
             I E V       Y      +NAVL KV++   
Sbjct: 101 AAIHETVEAVKHIDYARASGLVNAVLRKVAKNPN 134


>gi|27364478|ref|NP_760006.1| 16S rRNA methyltransferase B [Vibrio vulnificus CMCP6]
 gi|46396909|sp|Q8DDE5|RSMB_VIBVU RecName: Full=Ribosomal RNA small subunit methyltransferase B;
           AltName: Full=16S rRNA m5C967 methyltransferase;
           AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
           rsmB
 gi|27360597|gb|AAO09533.1| ribosomal RNA small subunit methyltransferase B [Vibrio vulnificus
           CMCP6]
          Length = 426

 Score = 41.2 bits (96), Expect = 0.054,   Method: Composition-based stats.
 Identities = 24/140 (17%), Positives = 46/140 (32%), Gaps = 16/140 (11%)

Query: 20  RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79
           R AA   LYQ+   G S +  + E              +      D    + I +G +  
Sbjct: 4   RAAAANVLYQVVDRGNSLSTALPE-------------AQQSIRPRDHALLQEICYGALRY 50

Query: 80  KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139
              ++ +    + +         +   ++  G+ +L     +P    + E V  A     
Sbjct: 51  LPRLESIAGKLMDK--PLKGKQRVFHHLILVGLYQLGHMR-IPAHAAVGETVEGAQALKG 107

Query: 140 GDEPKFINAVLDKVSRKEEI 159
                 INAVL    R+++ 
Sbjct: 108 PRLRGLINAVLRNYQREQQA 127


>gi|99079930|ref|YP_612084.1| Fmu (Sun) [Ruegeria sp. TM1040]
 gi|99036210|gb|ABF62822.1| Fmu (Sun) [Ruegeria sp. TM1040]
          Length = 424

 Score = 40.9 bits (95), Expect = 0.058,   Method: Composition-based stats.
 Identities = 27/141 (19%), Positives = 55/141 (39%), Gaps = 21/141 (14%)

Query: 17  GIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGV 76
             AR AAV AL           +++ E       ++ +  +       D    + +   V
Sbjct: 9   SDARRAAV-AL---------LDKVLGEGL---LLSECQTQILERLEPADRARAQRLALQV 55

Query: 77  MDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCI-AH 135
           +   +  D +++  L +  +       + + LR G +EL  C       ++++ V + A 
Sbjct: 56  LRALERADRVLAKHLRKPPALH-----VRNALRLGTVEL--CSGGAAHGVVNDIVNLVAR 108

Query: 136 DFFYGDEPKFINAVLDKVSRK 156
              +G     +NAVL KV+ +
Sbjct: 109 HRRHGQLKGLVNAVLRKVATE 129


>gi|218295080|ref|ZP_03495916.1| NusB/RsmB/TIM44-like protein [Thermus aquaticus Y51MC23]
 gi|218244283|gb|EED10808.1| NusB/RsmB/TIM44-like protein [Thermus aquaticus Y51MC23]
          Length = 398

 Score = 40.9 bits (95), Expect = 0.059,   Method: Composition-based stats.
 Identities = 25/99 (25%), Positives = 40/99 (40%), Gaps = 6/99 (6%)

Query: 59  SVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIEC 118
           S     D  +   +++GV+ R + +D L+   L       RL   +  ILR G LE +  
Sbjct: 34  SDLPERDKAYVTHLVYGVLRRLRLLDFLLEPHLRA---PDRLPKEVLWILRLGALEWLLG 90

Query: 119 HSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKE 157
                 V  S +V  A           +NAVL ++  +E
Sbjct: 91  KEDHARV--SPWVEEAKARHPALS-GLVNAVLRRLKPRE 126


>gi|225024416|ref|ZP_03713608.1| hypothetical protein EIKCOROL_01291 [Eikenella corrodens ATCC
           23834]
 gi|224942797|gb|EEG24006.1| hypothetical protein EIKCOROL_01291 [Eikenella corrodens ATCC
           23834]
          Length = 419

 Score = 40.9 bits (95), Expect = 0.061,   Method: Composition-based stats.
 Identities = 22/126 (17%), Positives = 50/126 (39%), Gaps = 15/126 (11%)

Query: 33  IGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLT 92
            GC+ +++++E          +L  +      D+ +      G +  +  +DL+++    
Sbjct: 19  AGCNLSDVLAEIWR----DHPQLSAQERGALQDIAYGCQRFSGSL--RALLDLMLNK--- 69

Query: 93  EKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDK 152
                 R D+   S++ A + +L    +    V+ +E V  A     G      NA+L +
Sbjct: 70  ---PLPRADI--RSLILAALYQLAYSRNAAHAVV-NEAVRAAGKIGKGQYKALTNALLRR 123

Query: 153 VSRKEE 158
             R+ +
Sbjct: 124 FLRERD 129


>gi|30249919|ref|NP_841989.1| sun; rRNA methylase [Nitrosomonas europaea ATCC 19718]
 gi|30180956|emb|CAD85883.1| sun; rRNA methylase [Nitrosomonas europaea ATCC 19718]
          Length = 426

 Score = 40.9 bits (95), Expect = 0.062,   Method: Composition-based stats.
 Identities = 27/137 (19%), Positives = 48/137 (35%), Gaps = 17/137 (12%)

Query: 21  LAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRK 80
           L AVQA+ ++   G + TE++           + L  +      D+ +      GV+   
Sbjct: 6   LLAVQAIREV-FAGANLTEVLRNIWQ----TGSHLTPQQRGAIQDIAY------GVLRHY 54

Query: 81  QHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYG 140
             +D ++   L +       D  L  +L   + +L      P   I+   V  +      
Sbjct: 55  GQLDAILHKLLNK--PVQ--DKQLHYLLAVALYQLRYSK-APAHAIVDHAVSSSRKITRN 109

Query: 141 DE-PKFINAVLDKVSRK 156
                 +NAVL    RK
Sbjct: 110 PAVSGLVNAVLRNFMRK 126


>gi|218514046|ref|ZP_03510886.1| probable RNA methyltransferase - sun protein [Rhizobium etli 8C-3]
          Length = 380

 Score = 40.9 bits (95), Expect = 0.063,   Method: Composition-based stats.
 Identities = 20/95 (21%), Positives = 37/95 (38%), Gaps = 10/95 (10%)

Query: 79  RKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFF 138
               ID  I+S L            L  +L  G  +++    VP    +   V  A+   
Sbjct: 1   HLPRIDAAIASLLES--PLPEGARALHHVLSIGAAQILY-LDVPDHSAVDLAVEQANQ-- 55

Query: 139 YGDEPKF---INAVLDKVSRKEE--IKRSGCVSAI 168
                +F   +NAVL ++ R+++  +   G V+ +
Sbjct: 56  DPRNRRFAKLVNAVLRRLGREKDPVLAEIGKVAPM 90


>gi|213621077|ref|ZP_03373860.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
           serovar Typhi str. E98-2068]
          Length = 180

 Score = 40.9 bits (95), Expect = 0.065,   Method: Composition-based stats.
 Identities = 18/101 (17%), Positives = 39/101 (38%), Gaps = 3/101 (2%)

Query: 58  ESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIE 117
           +      D    + +  GV+     ++ LI+  ++   +  +    +  ++  G  +L+ 
Sbjct: 1   QQKVADKDKALLQELCFGVLRTLSQLEWLINKLMSRPMTGKQ--RTVHYLIMVGFYQLLY 58

Query: 118 CHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEE 158
              VP    ++E V  A           IN VL +  R++E
Sbjct: 59  TR-VPPHAALAETVEGAVSIKRPQLKGLINGVLRQFQRQQE 98


>gi|71736115|ref|YP_272333.1| sun protein [Pseudomonas syringae pv. phaseolicola 1448A]
 gi|71556668|gb|AAZ35879.1| sun protein [Pseudomonas syringae pv. phaseolicola 1448A]
 gi|320326680|gb|EFW82725.1| sun protein [Pseudomonas syringae pv. glycinea str. B076]
 gi|320331346|gb|EFW87289.1| sun protein [Pseudomonas syringae pv. glycinea str. race 4]
 gi|330881831|gb|EGH15980.1| 16S rRNA methyltransferase B [Pseudomonas syringae pv. glycinea
           str. race 4]
          Length = 448

 Score = 40.9 bits (95), Expect = 0.068,   Method: Composition-based stats.
 Identities = 21/95 (22%), Positives = 34/95 (35%), Gaps = 3/95 (3%)

Query: 65  DLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVE 124
           D    + +  G    +  +  L +  L +   F   D  + ++L  G+ +L     +P  
Sbjct: 36  DRGLTQDLAFGTARWQPRLSALAAKLLQK--PFKAADADVEALLLVGLYQLFYSR-IPAH 92

Query: 125 VIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEI 159
             I E V  AH          +NAVL    R  E 
Sbjct: 93  AAIGETVGCAHKLKKPWAKGLLNAVLRNAQRDGEA 127


>gi|93007290|ref|YP_581727.1| Fmu (Sun) [Psychrobacter cryohalolentis K5]
 gi|92394968|gb|ABE76243.1| Fmu (Sun) [Psychrobacter cryohalolentis K5]
          Length = 524

 Score = 40.9 bits (95), Expect = 0.069,   Method: Composition-based stats.
 Identities = 16/98 (16%), Positives = 37/98 (37%), Gaps = 5/98 (5%)

Query: 59  SVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIEC 118
           +     D  +   ++   + +   ++ L+ S          +     + ++ G+ +L+  
Sbjct: 51  NSLHDGDKGFAHALLLTTLRQWYALERLLDSLADNSIDEKEV----RTTIQVGLTQLLYL 106

Query: 119 HSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRK 156
             V     I E V  A +  +      INA+L KV++ 
Sbjct: 107 Q-VADHAAIHETVEAAKEIEFAHATGLINAILRKVAKN 143


>gi|71066692|ref|YP_265419.1| hypothetical protein Psyc_2138 [Psychrobacter arcticus 273-4]
 gi|71039677|gb|AAZ19985.1| conserved hypothetical protein [Psychrobacter arcticus 273-4]
          Length = 524

 Score = 40.9 bits (95), Expect = 0.070,   Method: Composition-based stats.
 Identities = 16/98 (16%), Positives = 37/98 (37%), Gaps = 5/98 (5%)

Query: 59  SVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIEC 118
           +     D  +   ++   + +   ++ L+ S          +     + ++ G+ +L+  
Sbjct: 51  NSLHDGDKGFAHALLLTTLRQWYALERLLDSLADNSIDEKEV----RTTIQVGLTQLLYL 106

Query: 119 HSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRK 156
             V     I E V  A +  +      INA+L KV++ 
Sbjct: 107 Q-VADHAAIHETVEAAKEIEFAHATGLINAILRKVAKN 143


>gi|56459128|ref|YP_154409.1| tRNA and rRNA cytosine-C5-methylase [Idiomarina loihiensis L2TR]
 gi|56178138|gb|AAV80860.1| tRNA and rRNA cytosine-C5-methylase [Idiomarina loihiensis L2TR]
          Length = 442

 Score = 40.9 bits (95), Expect = 0.071,   Method: Composition-based stats.
 Identities = 17/98 (17%), Positives = 35/98 (35%), Gaps = 3/98 (3%)

Query: 59  SVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIEC 118
                 D      I +GV+     ++ L+ + L +         +L  +L  G  +L  C
Sbjct: 43  GKLSDADKRLASAISYGVLRVLPSLNKLVGAKLDK--PLKGKLKVLHYLLLVGAYQL-YC 99

Query: 119 HSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRK 156
             +     +S  V  A      +    +N +L ++ R+
Sbjct: 100 LRIKDHAAVSATVEAARILGKRNHKGLVNGILRQLLRE 137


>gi|300718674|ref|YP_003743477.1| 16S rRNA methyltransferase B [Erwinia billingiae Eb661]
 gi|299064510|emb|CAX61630.1| 16S rRNA methyltransferase B [Erwinia billingiae Eb661]
          Length = 429

 Score = 40.5 bits (94), Expect = 0.074,   Method: Composition-based stats.
 Identities = 21/131 (16%), Positives = 45/131 (34%), Gaps = 11/131 (8%)

Query: 32  IIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCL 91
           +   +   I    E  +  ++     +      D    + + +GV+     ++ +I    
Sbjct: 7   LRSIAAQTIEKVVEQGQSLSNVLPAAQKSVAEKDAALLQELCYGVLRTLPQLEWIIGQL- 65

Query: 92  TEKWSFSR-LDMILCSI---LRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFIN 147
                  R +     +I   +  G+ +LI    +P    ++E V  A           IN
Sbjct: 66  -----MERPMTGKQRTIHFLVMVGLYQLIFTR-IPAHAALAETVEGASSLKRQQFKGLIN 119

Query: 148 AVLDKVSRKEE 158
            VL +  RK++
Sbjct: 120 GVLRQFQRKQD 130


>gi|153008423|ref|YP_001369638.1| Fmu (Sun) domain-containing protein [Ochrobactrum anthropi ATCC
           49188]
 gi|151560311|gb|ABS13809.1| Fmu (Sun) domain protein [Ochrobactrum anthropi ATCC 49188]
          Length = 453

 Score = 40.5 bits (94), Expect = 0.075,   Method: Composition-based stats.
 Identities = 18/97 (18%), Positives = 38/97 (39%), Gaps = 8/97 (8%)

Query: 65  DLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVE 124
           D    R I+   +  +  I+  I+  L          + L  +L   + ++    ++P  
Sbjct: 52  DRALVRAILGSALRNRGSIERAINKRLDR--PLPENAVALKHLLHVAIAQIFY-LNLPDH 108

Query: 125 VIISEYVCIAHDFFYGDEPKF---INAVLDKVSRKEE 158
             +   V  A+        K+   +NA+L ++SR +E
Sbjct: 109 SAVDLAVEAANA--DPRNRKYAGLVNALLRRLSRNKE 143


>gi|71905670|ref|YP_283257.1| Fmu, rRNA SAM-dependent methyltransferase [Dechloromonas aromatica
           RCB]
 gi|71845291|gb|AAZ44787.1| Fmu, rRNA SAM-dependent methyltransferase [Dechloromonas aromatica
           RCB]
          Length = 419

 Score = 40.5 bits (94), Expect = 0.075,   Method: Composition-based stats.
 Identities = 15/89 (16%), Positives = 32/89 (35%), Gaps = 5/89 (5%)

Query: 70  RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISE 129
           + +++G +      D  +   L +      +     ++L   +  L         V+  +
Sbjct: 46  QDLVYGSLRAYGRGDFFLGRLLDKPLDVEEV----RALLLVSIYRLETRPDAAHTVV-DQ 100

Query: 130 YVCIAHDFFYGDEPKFINAVLDKVSRKEE 158
            V  A +   G     +NAVL    R++E
Sbjct: 101 AVSAAGELANGRFRGLVNAVLRNFLRQQE 129


>gi|169794225|ref|YP_001712018.1| 16S rRNA m5C967 SAM-dependent methyltransferase [Acinetobacter
           baumannii AYE]
 gi|215481783|ref|YP_002323965.1| ribosomal RNA small subunit methyltransferase B [Acinetobacter
           baumannii AB307-0294]
 gi|301510400|ref|ZP_07235637.1| ribosomal RNA small subunit methyltransferase B [Acinetobacter
           baumannii AB058]
 gi|332850303|ref|ZP_08432637.1| ribosomal RNA small subunit methyltransferase B [Acinetobacter
           baumannii 6013150]
 gi|332871589|ref|ZP_08440083.1| ribosomal RNA small subunit methyltransferase B [Acinetobacter
           baumannii 6013113]
 gi|169147152|emb|CAM85011.1| 16S rRNA m5C967 SAM-dependent methyltransferase [Acinetobacter
           baumannii AYE]
 gi|213987633|gb|ACJ57932.1| ribosomal RNA small subunit methyltransferase B [Acinetobacter
           baumannii AB307-0294]
 gi|332730761|gb|EGJ62071.1| ribosomal RNA small subunit methyltransferase B [Acinetobacter
           baumannii 6013150]
 gi|332731443|gb|EGJ62735.1| ribosomal RNA small subunit methyltransferase B [Acinetobacter
           baumannii 6013113]
          Length = 434

 Score = 40.5 bits (94), Expect = 0.077,   Method: Composition-based stats.
 Identities = 17/105 (16%), Positives = 41/105 (39%), Gaps = 5/105 (4%)

Query: 59  SVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIEC 118
           +     D   F  ++ G + +   +  +    L++    +  +  + + L  G+ +++ C
Sbjct: 39  NQVAERDRALFHELVLGTLRQWFALKSISLPLLSK--PLN--NETVETCLYVGLYQVL-C 93

Query: 119 HSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRSG 163
             +     ISE V       +      +NA+L + +R+ E    G
Sbjct: 94  TRIAAHAAISETVDATKQLGFPALSGIVNAILRRATRETEDFEQG 138


>gi|90421553|ref|YP_529923.1| Fmu (Sun) [Rhodopseudomonas palustris BisB18]
 gi|90103567|gb|ABD85604.1| Fmu (Sun) [Rhodopseudomonas palustris BisB18]
          Length = 450

 Score = 40.5 bits (94), Expect = 0.077,   Method: Composition-based stats.
 Identities = 20/131 (15%), Positives = 44/131 (33%), Gaps = 14/131 (10%)

Query: 37  TTEIISEYETYRFCADTELDVESVYL------HVDLEWFRVIIHGVMDRKQHIDLLISSC 90
             +I+          D +L+  + +         D    R ++  ++ R   +  ++S  
Sbjct: 21  AADILDGVLHKHRTLDDQLEGAAAHPGLKTLSDRDRALMRRLVATILRRLGTLGHVLSRM 80

Query: 91  LTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKF---IN 147
           L              S L  G  +++    VP    +   V +          K+   +N
Sbjct: 81  LDRGLPTD--APRAQSALLIGAAQILWM-EVPDHAAVDLSVRLVQ--SDRRAAKYAGLVN 135

Query: 148 AVLDKVSRKEE 158
           AVL + +R+ +
Sbjct: 136 AVLRRCAREGQ 146


>gi|262280615|ref|ZP_06058399.1| 16S rRNA m5C967 SAM-dependent methyltransferase [Acinetobacter
           calcoaceticus RUH2202]
 gi|262258393|gb|EEY77127.1| 16S rRNA m5C967 SAM-dependent methyltransferase [Acinetobacter
           calcoaceticus RUH2202]
          Length = 434

 Score = 40.5 bits (94), Expect = 0.078,   Method: Composition-based stats.
 Identities = 17/109 (15%), Positives = 43/109 (39%), Gaps = 5/109 (4%)

Query: 59  SVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIEC 118
           +     D   F  ++ G + +   +  +    L++    +  +  + + L  G+ +++ C
Sbjct: 39  NQVAERDRALFHELVLGTLRQWFALKSISLPLLSK--PLN--NETVETCLYVGLYQVL-C 93

Query: 119 HSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRSGCVSA 167
             +     ISE V       +      +NA+L + +R+ +  + G   A
Sbjct: 94  TRIAAHAAISETVDATKQLGFPALSGIVNAILRRATRETDEFQQGLQQA 142


>gi|312882737|ref|ZP_07742472.1| ribosomal RNA small subunit methyltransferase B [Vibrio
           caribbenthicus ATCC BAA-2122]
 gi|309369595|gb|EFP97112.1| ribosomal RNA small subunit methyltransferase B [Vibrio
           caribbenthicus ATCC BAA-2122]
          Length = 426

 Score = 40.5 bits (94), Expect = 0.079,   Method: Composition-based stats.
 Identities = 22/139 (15%), Positives = 44/139 (31%), Gaps = 16/139 (11%)

Query: 20  RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79
           R AA   L+Q+   G S +  +                ++     D    + I +G +  
Sbjct: 4   RAAAANVLFQVVDKGHSLSNAL-------------PAAQTTIKPRDYALLQEICYGALRY 50

Query: 80  KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139
              ++   +  + +         +   ++  G+ +L     +P    + E V        
Sbjct: 51  LPRLESTANQLMDK--PLKGKQRVFHHLILVGLYQLSFMR-IPAHAAVGETVEATKTLKG 107

Query: 140 GDEPKFINAVLDKVSRKEE 158
                 INAVL    R +E
Sbjct: 108 PRLRGLINAVLRNYQRNQE 126


>gi|213158779|ref|YP_002321200.1| ribosomal RNA small subunit methyltransferase B [Acinetobacter
           baumannii AB0057]
 gi|301345911|ref|ZP_07226652.1| ribosomal RNA small subunit methyltransferase B [Acinetobacter
           baumannii AB056]
 gi|301596687|ref|ZP_07241695.1| ribosomal RNA small subunit methyltransferase B [Acinetobacter
           baumannii AB059]
 gi|213057939|gb|ACJ42841.1| ribosomal RNA small subunit methyltransferase B [Acinetobacter
           baumannii AB0057]
          Length = 434

 Score = 40.5 bits (94), Expect = 0.079,   Method: Composition-based stats.
 Identities = 17/105 (16%), Positives = 41/105 (39%), Gaps = 5/105 (4%)

Query: 59  SVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIEC 118
           +     D   F  ++ G + +   +  +    L++    +  +  + + L  G+ +++ C
Sbjct: 39  NQVAERDRALFHELVLGTLRQWFALKSISLPLLSK--PLN--NETVETCLYVGLYQVL-C 93

Query: 119 HSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRSG 163
             +     ISE V       +      +NA+L + +R+ E    G
Sbjct: 94  TRIAAHAAISETVDATKQLGFPALSGIVNAILRRATRETEDFEQG 138


>gi|153837662|ref|ZP_01990329.1| ribosomal RNA small subunit methyltransferase B [Vibrio
           parahaemolyticus AQ3810]
 gi|149748952|gb|EDM59779.1| ribosomal RNA small subunit methyltransferase B [Vibrio
           parahaemolyticus AQ3810]
          Length = 427

 Score = 40.5 bits (94), Expect = 0.079,   Method: Composition-based stats.
 Identities = 18/102 (17%), Positives = 36/102 (35%), Gaps = 3/102 (2%)

Query: 57  VESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELI 116
            +      D    + I +G +     +  +I++ L +K        +   ++  G+ +L 
Sbjct: 28  AQQTVRPRDHALLQEICYGALRYLPRL-EMIANQLMDK-PLKGKQRVFHHLILVGIYQLS 85

Query: 117 ECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEE 158
               +P    + E V    +         INAVL    R +E
Sbjct: 86  FMR-IPAHAAVGETVEGTKELKGPRLRGLINAVLRNYQRNQE 126


>gi|328471169|gb|EGF42071.1| 16S rRNA methyltransferase B [Vibrio parahaemolyticus 10329]
          Length = 427

 Score = 40.5 bits (94), Expect = 0.079,   Method: Composition-based stats.
 Identities = 18/102 (17%), Positives = 36/102 (35%), Gaps = 3/102 (2%)

Query: 57  VESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELI 116
            +      D    + I +G +     +  +I++ L +K        +   ++  G+ +L 
Sbjct: 28  AQQTVRPRDHALLQEICYGALRYLPRL-EMIANQLMDK-PLKGKQRVFHHLILVGIYQLS 85

Query: 117 ECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEE 158
               +P    + E V    +         INAVL    R +E
Sbjct: 86  FMR-IPAHAAVGETVEGTKELKGPRLRGLINAVLRNYQRNQE 126


>gi|269967001|ref|ZP_06181071.1| sun protein [Vibrio alginolyticus 40B]
 gi|269828395|gb|EEZ82659.1| sun protein [Vibrio alginolyticus 40B]
          Length = 427

 Score = 40.5 bits (94), Expect = 0.081,   Method: Composition-based stats.
 Identities = 18/102 (17%), Positives = 36/102 (35%), Gaps = 3/102 (2%)

Query: 57  VESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELI 116
            +      D    + I +G +     +  +I++ L +K        +   ++  G+ +L 
Sbjct: 28  AQQTVRPRDHALLQEICYGALRYLPRL-EMIANQLMDK-PLKGKQRVFHHLILVGIYQLS 85

Query: 117 ECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEE 158
               +P    + E V    +         INAVL    R +E
Sbjct: 86  FMR-IPAHAAVGETVEGTKELKGPRLRGLINAVLRNYQRNQE 126


>gi|260901337|ref|ZP_05909732.1| ribosomal RNA small subunit methyltransferase B [Vibrio
           parahaemolyticus AQ4037]
 gi|308109871|gb|EFO47411.1| ribosomal RNA small subunit methyltransferase B [Vibrio
           parahaemolyticus AQ4037]
          Length = 427

 Score = 40.5 bits (94), Expect = 0.081,   Method: Composition-based stats.
 Identities = 18/102 (17%), Positives = 36/102 (35%), Gaps = 3/102 (2%)

Query: 57  VESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELI 116
            +      D    + I +G +     +  +I++ L +K        +   ++  G+ +L 
Sbjct: 28  AQQTVRPRDHALLQEICYGALRYLPRL-EMIANQLMDK-PLKGKQRVFHHLILVGIYQLS 85

Query: 117 ECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEE 158
               +P    + E V    +         INAVL    R +E
Sbjct: 86  FMR-IPAHAAVGETVEGTKELKGPRLRGLINAVLRNYQRNQE 126


>gi|91226301|ref|ZP_01261141.1| Sun protein [Vibrio alginolyticus 12G01]
 gi|91189312|gb|EAS75591.1| Sun protein [Vibrio alginolyticus 12G01]
          Length = 427

 Score = 40.5 bits (94), Expect = 0.081,   Method: Composition-based stats.
 Identities = 18/102 (17%), Positives = 36/102 (35%), Gaps = 3/102 (2%)

Query: 57  VESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELI 116
            +      D    + I +G +     +  +I++ L +K        +   ++  G+ +L 
Sbjct: 28  AQQTVRPRDHALLQEICYGALRYLPRL-EMIANQLMDK-PLKGKQRVFHHLILVGIYQLS 85

Query: 117 ECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEE 158
               +P    + E V    +         INAVL    R +E
Sbjct: 86  FMR-IPAHAAVGETVEGTKELKGPRLRGLINAVLRNYQRNQE 126


>gi|254229997|ref|ZP_04923398.1| ribosomal RNA small subunit methyltransferase B [Vibrio sp. Ex25]
 gi|262392829|ref|YP_003284683.1| ribosomal RNA small subunit methyltransferase B [Vibrio sp. Ex25]
 gi|151937499|gb|EDN56356.1| ribosomal RNA small subunit methyltransferase B [Vibrio sp. Ex25]
 gi|262336423|gb|ACY50218.1| ribosomal RNA small subunit methyltransferase B [Vibrio sp. Ex25]
          Length = 427

 Score = 40.5 bits (94), Expect = 0.082,   Method: Composition-based stats.
 Identities = 18/102 (17%), Positives = 36/102 (35%), Gaps = 3/102 (2%)

Query: 57  VESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELI 116
            +      D    + I +G +     +  +I++ L +K        +   ++  G+ +L 
Sbjct: 28  AQQTVRPRDHALLQEICYGALRYLPRL-EMIANQLMDK-PLKGKQRVFHHLILVGIYQLS 85

Query: 117 ECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEE 158
               +P    + E V    +         INAVL    R +E
Sbjct: 86  FMR-IPAHAAVGETVEGTKELKGPRLRGLINAVLRNYQRNQE 126


>gi|319406332|emb|CBI79969.1| SUN-family protein [Bartonella sp. AR 15-3]
          Length = 455

 Score = 40.5 bits (94), Expect = 0.083,   Method: Composition-based stats.
 Identities = 19/103 (18%), Positives = 36/103 (34%), Gaps = 14/103 (13%)

Query: 65  DLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVE 124
           D    R I+   +  +  I + +S  L +          L  +L   + +++    +P  
Sbjct: 57  DRLLCRAILGAALRHRSQITVALSHFLVQ--PLPAQAFSLHHLLHISITQILY-LDIPDH 113

Query: 125 VIISEYVCIAH------DFFYGDEPKFINAVLDKVSRKEEIKR 161
             I   V +A        F        +NA+L   +R+  I R
Sbjct: 114 AAIDLAVRVAKIDSRLRRFSG-----LVNAILRNCAREAAILR 151


>gi|293610442|ref|ZP_06692742.1| conserved hypothetical protein [Acinetobacter sp. SH024]
 gi|292826786|gb|EFF85151.1| conserved hypothetical protein [Acinetobacter sp. SH024]
          Length = 434

 Score = 40.5 bits (94), Expect = 0.085,   Method: Composition-based stats.
 Identities = 17/109 (15%), Positives = 43/109 (39%), Gaps = 5/109 (4%)

Query: 59  SVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIEC 118
           +     D   F  ++ G + +   +  +    L++    +  +  + + L  G+ +++ C
Sbjct: 39  NQVAERDRALFHELVLGTLRQWFALKSISLPLLSK--PLN--NETVETCLYVGLYQVL-C 93

Query: 119 HSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRSGCVSA 167
             +     ISE V       +      +NA+L + +R+ +  + G   A
Sbjct: 94  TRIAAHAAISETVDATKQLGFPALSGIVNAILRRATRETDDFQQGLQQA 142


>gi|28899818|ref|NP_799423.1| Sun protein [Vibrio parahaemolyticus RIMD 2210633]
 gi|260362016|ref|ZP_05775021.1| ribosomal RNA small subunit methyltransferase B [Vibrio
           parahaemolyticus K5030]
 gi|260876497|ref|ZP_05888852.1| ribosomal RNA small subunit methyltransferase B [Vibrio
           parahaemolyticus AN-5034]
 gi|260897446|ref|ZP_05905942.1| ribosomal RNA small subunit methyltransferase B [Vibrio
           parahaemolyticus Peru-466]
 gi|46396865|sp|Q87KD3|RSMB_VIBPA RecName: Full=Ribosomal RNA small subunit methyltransferase B;
           AltName: Full=16S rRNA m5C967 methyltransferase;
           AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
           rsmB
 gi|28808070|dbj|BAC61307.1| Sun protein [Vibrio parahaemolyticus RIMD 2210633]
 gi|308087890|gb|EFO37585.1| ribosomal RNA small subunit methyltransferase B [Vibrio
           parahaemolyticus Peru-466]
 gi|308090396|gb|EFO40091.1| ribosomal RNA small subunit methyltransferase B [Vibrio
           parahaemolyticus AN-5034]
 gi|308114191|gb|EFO51731.1| ribosomal RNA small subunit methyltransferase B [Vibrio
           parahaemolyticus K5030]
          Length = 427

 Score = 40.5 bits (94), Expect = 0.085,   Method: Composition-based stats.
 Identities = 18/102 (17%), Positives = 36/102 (35%), Gaps = 3/102 (2%)

Query: 57  VESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELI 116
            +      D    + I +G +     +  +I++ L +K        +   ++  G+ +L 
Sbjct: 28  AQQTVRPRDHALLQEICYGALRYLPRL-EMIANQLMDK-PLKGKQRVFHHLILVGIYQLS 85

Query: 117 ECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEE 158
               +P    + E V    +         INAVL    R +E
Sbjct: 86  FMR-IPAHAAVGETVEGTKELKGPRLRGLINAVLRNYQRNQE 126


>gi|239502749|ref|ZP_04662059.1| ribosomal RNA small subunit methyltransferase B [Acinetobacter
           baumannii AB900]
          Length = 434

 Score = 40.5 bits (94), Expect = 0.085,   Method: Composition-based stats.
 Identities = 17/109 (15%), Positives = 43/109 (39%), Gaps = 5/109 (4%)

Query: 59  SVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIEC 118
           +     D   F  ++ G + +   +  +    L++    +  +  + + L  G+ +++ C
Sbjct: 39  NQVAERDRALFHELVLGTLRQWFALKSISLPLLSK--PLN--NETVETCLYVGLYQVL-C 93

Query: 119 HSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRSGCVSA 167
             +     ISE V       +      +NA+L + +R+ +  + G   A
Sbjct: 94  TRIAAHAAISETVDATKQLGFPALSGIVNAILRRATRETDDFQQGLQQA 142


>gi|14521110|ref|NP_126585.1| sun protein (fmu protein) [Pyrococcus abyssi GE5]
 gi|5458327|emb|CAB49816.1| Sun/NOL1/NOP nucleolar protein [Pyrococcus abyssi GE5]
          Length = 450

 Score = 40.5 bits (94), Expect = 0.086,   Method: Composition-based stats.
 Identities = 22/100 (22%), Positives = 39/100 (39%), Gaps = 2/100 (2%)

Query: 56  DVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLEL 115
            VE              +  +   +  ID +++S L        LD+ L ++LR G  E+
Sbjct: 37  RVEGKDKETARGIAHAYVFEIEKWRAKIDFILNSVL-RGSKVEDLDLYLANLLRIGTFEM 95

Query: 116 IECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSR 155
                V   +     V +  + F   + KF NA+L +V +
Sbjct: 96  KF-KGVNPAIATDSVVRVVKEKFDLTKAKFANAILREVEK 134


>gi|156972728|ref|YP_001443635.1| cytosine-C5-methylase [Vibrio harveyi ATCC BAA-1116]
 gi|156524322|gb|ABU69408.1| hypothetical protein VIBHAR_00393 [Vibrio harveyi ATCC BAA-1116]
          Length = 427

 Score = 40.5 bits (94), Expect = 0.087,   Method: Composition-based stats.
 Identities = 18/94 (19%), Positives = 35/94 (37%), Gaps = 3/94 (3%)

Query: 65  DLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVE 124
           D    + I +G +     +  +I++ L +K        +   ++  G+ +L     +P  
Sbjct: 36  DHALLQEICYGALRYLPRL-EMIANQLMDK-PLKGKQRVFHHLILVGIYQLSFMR-IPAH 92

Query: 125 VIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEE 158
             + E V    +         INAVL    R +E
Sbjct: 93  AAVGETVEGTKELKGPRLRGLINAVLRNYQRNQE 126


>gi|323519897|gb|ADX94278.1| tRNA and rRNA cytosine-C5-methylase [Acinetobacter baumannii
           TCDC-AB0715]
          Length = 434

 Score = 40.5 bits (94), Expect = 0.090,   Method: Composition-based stats.
 Identities = 19/109 (17%), Positives = 43/109 (39%), Gaps = 5/109 (4%)

Query: 59  SVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIEC 118
           +     D   F  ++ G + +   + L+    L++    +  +  + + L  G+ +++ C
Sbjct: 39  NQVAERDRALFHELVLGTLRQWFALKLISLPLLSK--PLN--NETVETCLYVGLYQVL-C 93

Query: 119 HSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRSGCVSA 167
             +     ISE V       +      +NA+L + +R+ E    G   A
Sbjct: 94  TRIAAHAAISETVDATKQLGFPALSGIVNAILRRATRETEDFEQGLQQA 142


>gi|238898791|ref|YP_002924473.1| 16S rRNA m5C967 methyltransferase,
           S-adenosyl-L-methionine-dependent [Candidatus
           Hamiltonella defensa 5AT (Acyrthosiphon pisum)]
 gi|229466551|gb|ACQ68325.1| 16S rRNA m5C967 methyltransferase,
           S-adenosyl-L-methionine-dependent [Candidatus
           Hamiltonella defensa 5AT (Acyrthosiphon pisum)]
          Length = 429

 Score = 40.5 bits (94), Expect = 0.090,   Method: Composition-based stats.
 Identities = 28/139 (20%), Positives = 54/139 (38%), Gaps = 16/139 (11%)

Query: 20  RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79
           R  A Q + Q+   G S + ++ E + +               + D    + +  G +  
Sbjct: 8   RAIAAQIISQVLDKGRSLSVVLPEVQNH-------------VPYKDKALLQELCFGTLRV 54

Query: 80  KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139
              ++  +   +T     +    +L  +L  G+ +LI    +P   I+SE V  A    Y
Sbjct: 55  LPRLEHCVKHLMTR--PLNAKKRLLHFLLMVGLYQLIYTR-IPPHAILSETVKAAAVLKY 111

Query: 140 GDEPKFINAVLDKVSRKEE 158
                 INA+L +  R++E
Sbjct: 112 PQFKGLINAILREFERRKE 130


>gi|269962646|ref|ZP_06176991.1| sun protein [Vibrio harveyi 1DA3]
 gi|269832569|gb|EEZ86683.1| sun protein [Vibrio harveyi 1DA3]
          Length = 427

 Score = 40.5 bits (94), Expect = 0.091,   Method: Composition-based stats.
 Identities = 18/94 (19%), Positives = 35/94 (37%), Gaps = 3/94 (3%)

Query: 65  DLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVE 124
           D    + I +G +     +  +I++ L +K        +   ++  G+ +L     +P  
Sbjct: 36  DHALLQEICYGALRYLPRL-EMIANQLMDK-PLKGKQRVFHHLILVGIYQLSFMR-IPAH 92

Query: 125 VIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEE 158
             + E V    +         INAVL    R +E
Sbjct: 93  AAVGETVEGTKELKGPRLRGLINAVLRNYQRNQE 126


>gi|323493837|ref|ZP_08098955.1| 16S rRNA methyltransferase B [Vibrio brasiliensis LMG 20546]
 gi|323311971|gb|EGA65117.1| 16S rRNA methyltransferase B [Vibrio brasiliensis LMG 20546]
          Length = 426

 Score = 40.5 bits (94), Expect = 0.093,   Method: Composition-based stats.
 Identities = 24/147 (16%), Positives = 47/147 (31%), Gaps = 16/147 (10%)

Query: 20  RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79
           R AA   L+Q+   G S +  +                +      D    + I +G +  
Sbjct: 4   RAAAANVLFQVVDKGHSLSNAL-------------PAAQQTIKPRDHALLQEICYGALRY 50

Query: 80  KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139
              ++ + +  + +         +   ++  G+ +L     +P    + E V        
Sbjct: 51  LPRLESIANELMDK--PLKGKQRVFHHLILVGIYQLSFMR-IPAHAAVGETVEGTKTLKG 107

Query: 140 GDEPKFINAVLDKVSRKEEIKRSGCVS 166
                 INAVL    R +E   +  VS
Sbjct: 108 PRLRGLINAVLRNYQRNQEELDAMAVS 134


>gi|325123992|gb|ADY83515.1| 16S rRNA m5C967 SAM-dependent methyltransferase [Acinetobacter
           calcoaceticus PHEA-2]
          Length = 434

 Score = 40.1 bits (93), Expect = 0.094,   Method: Composition-based stats.
 Identities = 17/109 (15%), Positives = 43/109 (39%), Gaps = 5/109 (4%)

Query: 59  SVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIEC 118
           +     D   F  ++ G + +   +  +    L++    +  +  + + L  G+ +++ C
Sbjct: 39  NQVAERDRALFHELVLGTLRQWFALKSISLPLLSK--PLN--NETVETCLYVGLYQVL-C 93

Query: 119 HSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRSGCVSA 167
             +     ISE V       +      +NA+L + +R+ +  + G   A
Sbjct: 94  TRIAAHAAISETVDATKQLGFPALSGIVNAILRRATRETDDFQQGLQQA 142


>gi|260557781|ref|ZP_05829994.1| ribosomal RNA small subunit methyltransferase B [Acinetobacter
           baumannii ATCC 19606]
 gi|260408572|gb|EEX01877.1| ribosomal RNA small subunit methyltransferase B [Acinetobacter
           baumannii ATCC 19606]
          Length = 434

 Score = 40.1 bits (93), Expect = 0.094,   Method: Composition-based stats.
 Identities = 17/109 (15%), Positives = 43/109 (39%), Gaps = 5/109 (4%)

Query: 59  SVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIEC 118
           +     D   F  ++ G + +   +  +    L++    +  +  + + L  G+ +++ C
Sbjct: 39  NQVAERDRALFHELVLGTLRQWFALKSISLPLLSK--PLN--NETVETCLYVGLYQVL-C 93

Query: 119 HSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRSGCVSA 167
             +     ISE V       +      +NA+L + +R+ +  + G   A
Sbjct: 94  TRIAAHAAISETVDATKQLGFPALSGIVNAILRRATRETDDFQQGLQQA 142


>gi|153834294|ref|ZP_01986961.1| ribosomal RNA small subunit methyltransferase B [Vibrio harveyi
           HY01]
 gi|148869302|gb|EDL68316.1| ribosomal RNA small subunit methyltransferase B [Vibrio harveyi
           HY01]
          Length = 427

 Score = 40.1 bits (93), Expect = 0.094,   Method: Composition-based stats.
 Identities = 18/94 (19%), Positives = 35/94 (37%), Gaps = 3/94 (3%)

Query: 65  DLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVE 124
           D    + I +G +     +  +I++ L +K        +   ++  G+ +L     +P  
Sbjct: 36  DHALLQEICYGALRYLPRL-EMIANQLMDK-PLKGKQRVFHHLILVGIYQLSFMR-IPAH 92

Query: 125 VIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEE 158
             + E V    +         INAVL    R +E
Sbjct: 93  AAVGETVEGTKELKGPRLRGLINAVLRNYQRNQE 126


>gi|148251938|ref|YP_001236523.1| putative ribosomal RNA small subunit methyltransferase B
           [Bradyrhizobium sp. BTAi1]
 gi|146404111|gb|ABQ32617.1| putative Ribosomal RNA small subunit methyltransferase B
           [Bradyrhizobium sp. BTAi1]
          Length = 450

 Score = 40.1 bits (93), Expect = 0.094,   Method: Composition-based stats.
 Identities = 20/129 (15%), Positives = 41/129 (31%), Gaps = 14/129 (10%)

Query: 37  TTEIISEYETYRFCADTELDVESVYL------HVDLEWFRVIIHGVMDRKQHIDLLISSC 90
             +++          D +LD    +         D    R ++   + R   +  ++S  
Sbjct: 21  AADVVDGVLHKHRTLDDQLDGTGAHPGLKQLADRDRALMRRLVATTLRRLGTLGHVLSRL 80

Query: 91  LTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKF---IN 147
           L              S L  G  +++    VP    +   V +          K+   +N
Sbjct: 81  LDRGVPTD--APRAQSALLIGAAQILWM-DVPDHAAVDLSVRLVQA--DRRAAKYAGLVN 135

Query: 148 AVLDKVSRK 156
           AVL + +R+
Sbjct: 136 AVLRRCARE 144


>gi|3288668|dbj|BAA31226.1| Fmu [Vibrio alginolyticus]
          Length = 211

 Score = 40.1 bits (93), Expect = 0.095,   Method: Composition-based stats.
 Identities = 18/102 (17%), Positives = 36/102 (35%), Gaps = 3/102 (2%)

Query: 57  VESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELI 116
            +      D    + I +G +     +  +I++ L +K        +   ++  G+ +L 
Sbjct: 28  AQQTVRPRDHALLQEICYGALRYLPRL-EMIANQLMDK-PLKGKQRVFHHLILVGIYQLS 85

Query: 117 ECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEE 158
               +P    + E V    +         INAVL    R +E
Sbjct: 86  FMR-IPAHAAVGETVEGTKELKGPRLRGLINAVLRNYQRNQE 126


>gi|317049808|ref|YP_004117456.1| sun protein [Pantoea sp. At-9b]
 gi|316951425|gb|ADU70900.1| sun protein [Pantoea sp. At-9b]
          Length = 428

 Score = 40.1 bits (93), Expect = 0.096,   Method: Composition-based stats.
 Identities = 20/103 (19%), Positives = 40/103 (38%), Gaps = 3/103 (2%)

Query: 57  VESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELI 116
            +      D    + +  GVM     ++ LIS  +      +    +L  ++  G+ +L+
Sbjct: 32  AQKSLSDKDGALLQELCFGVMRTLPQLEALISKLMER--PLTGKQRVLHYLIMVGLYQLL 89

Query: 117 ECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEI 159
               VP    ++E V  A      +    +N VL +  R++E 
Sbjct: 90  YTR-VPPHAALAETVAGAEVLKRANLKGLLNGVLRQFQRQQEA 131


>gi|184159973|ref|YP_001848312.1| tRNA and rRNA cytosine-C5-methylase [Acinetobacter baumannii ACICU]
 gi|183211567|gb|ACC58965.1| tRNA and rRNA cytosine-C5-methylase [Acinetobacter baumannii ACICU]
 gi|322509890|gb|ADX05344.1| 16S rRNA m5C967 SAM-dependent methyltransferase [Acinetobacter
           baumannii 1656-2]
          Length = 434

 Score = 40.1 bits (93), Expect = 0.097,   Method: Composition-based stats.
 Identities = 17/109 (15%), Positives = 43/109 (39%), Gaps = 5/109 (4%)

Query: 59  SVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIEC 118
           +     D   F  ++ G + +   +  +    L++    +  +  + + L  G+ +++ C
Sbjct: 39  NQVAERDRALFHELVLGTLRQWFALKSISLPLLSK--PLN--NETVETCLYVGLYQVL-C 93

Query: 119 HSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRSGCVSA 167
             +     ISE V       +      +NA+L + +R+ +  + G   A
Sbjct: 94  TRIAAHAAISETVDATKQLGFPALSGIVNAILRRATRETDDFQQGLQQA 142


>gi|14590913|ref|NP_142986.1| fmu protein [Pyrococcus horikoshii OT3]
 gi|3257494|dbj|BAA30177.1| 450aa long hypothetical fmu protein [Pyrococcus horikoshii OT3]
          Length = 450

 Score = 40.1 bits (93), Expect = 0.098,   Method: Composition-based stats.
 Identities = 23/100 (23%), Positives = 38/100 (38%), Gaps = 2/100 (2%)

Query: 56  DVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLEL 115
            VE              +  +   +  ID +++S L +      LD  L ++LR G  E+
Sbjct: 37  RVEGKDKETARGIAHAYVFEIEKWRAKIDFILNSVL-KGSRVEDLDTYLANLLRIGTFEM 95

Query: 116 IECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSR 155
                V   +     V +  + F     KF NAVL +V +
Sbjct: 96  KF-KGVNPAIATDSVVRVVKEKFDLTRAKFANAVLREVEK 134


>gi|89074758|ref|ZP_01161216.1| Putative Sun protein [Photobacterium sp. SKA34]
 gi|89049522|gb|EAR55083.1| Putative Sun protein [Photobacterium sp. SKA34]
          Length = 426

 Score = 40.1 bits (93), Expect = 0.10,   Method: Composition-based stats.
 Identities = 22/147 (14%), Positives = 50/147 (34%), Gaps = 16/147 (10%)

Query: 20  RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79
           R  A + +YQ+   G S +  +                +      D    + I +GV+  
Sbjct: 4   RATAAKVIYQVVDQGQSLSAAL-------------PAAQQDIRERDHALLQEICYGVLRW 50

Query: 80  KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139
              ++ +  + + +         +   ++  G+ +L     +P    ++E V        
Sbjct: 51  LPRLESITQALMDK--PLKGKQRVFHHLILVGLYQLGYMR-IPAHAAVAETVNATKTLKK 107

Query: 140 GDEPKFINAVLDKVSRKEEIKRSGCVS 166
                 INA+L    R++E   +  +S
Sbjct: 108 PQLRGLINAILRNYQRQQETLDAQAIS 134


>gi|160872609|ref|ZP_02062741.1| ribosomal RNA small subunit methyltransferase B [Rickettsiella
           grylli]
 gi|159121408|gb|EDP46746.1| ribosomal RNA small subunit methyltransferase B [Rickettsiella
           grylli]
          Length = 442

 Score = 40.1 bits (93), Expect = 0.10,   Method: Composition-based stats.
 Identities = 30/136 (22%), Positives = 58/136 (42%), Gaps = 9/136 (6%)

Query: 37  TTEIISEYETYRFCADTEL--DVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEK 94
              IIS +   +   +T L  +V S     D  + + + +GV+     +   +SS L +K
Sbjct: 8   AAHIISRFLKKKIALNTILFAEVPSGIDVRDRAFIQELCYGVIRWYFPL-KKLSSFLLKK 66

Query: 95  WSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVS 154
            S +R D  + +++  G+ +L   +  P    + E V  A +         IN VL    
Sbjct: 67  -SLNRSDQDIYALVLVGLYQLNYLNISPHA-AVYETVQAAKELRKRWAAPLINGVLRSFQ 124

Query: 155 RKEEIKRSGCVSAITQ 170
           R+    ++G +  ++Q
Sbjct: 125 RQ----KTGLLKKVSQ 136


>gi|225677037|ref|ZP_03788046.1| N utilization substance protein B, putative [Wolbachia
          endosymbiont of Muscidifurax uniraptor]
 gi|225590913|gb|EEH12131.1| N utilization substance protein B, putative [Wolbachia
          endosymbiont of Muscidifurax uniraptor]
          Length = 82

 Score = 40.1 bits (93), Expect = 0.10,   Method: Composition-based stats.
 Identities = 14/83 (16%), Positives = 32/83 (38%), Gaps = 1/83 (1%)

Query: 3  IQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYL 62
          +++   D K   +R  AR  AVQ  Y    +G + +    E    +   +   D+     
Sbjct: 1  MEEKPVDKKWRIKRSTARFLAVQIAYSNIFVGYNKSTFKLENCELKDYINKLKDIFECE- 59

Query: 63 HVDLEWFRVIIHGVMDRKQHIDL 85
            + ++   +++ V+   +  D 
Sbjct: 60 EFEHQFLENLLYKVIKSSEEYDK 82


>gi|169634914|ref|YP_001708650.1| 16S rRNA m5C967 SAM-dependent methyltransferase [Acinetobacter
           baumannii SDF]
 gi|169153706|emb|CAP02904.1| 16S rRNA m5C967 SAM-dependent methyltransferase [Acinetobacter
           baumannii]
          Length = 434

 Score = 40.1 bits (93), Expect = 0.11,   Method: Composition-based stats.
 Identities = 17/109 (15%), Positives = 43/109 (39%), Gaps = 5/109 (4%)

Query: 59  SVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIEC 118
           +     D   F  ++ G + +   +  +    L++    +  +  + + L  G+ +++ C
Sbjct: 39  NQVAERDRALFHELVLGTLRQWFALKSISLPLLSK--PLN--NETVETCLYVGLYQVL-C 93

Query: 119 HSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRSGCVSA 167
             +     ISE V       +      +NA+L + +R+ +  + G   A
Sbjct: 94  TRIAAHAAISETVDATKQLGFPALSGIVNAILRRATRETDDFQQGLQQA 142


>gi|163803318|ref|ZP_02197196.1| methionyl-tRNA formyltransferase [Vibrio sp. AND4]
 gi|159172888|gb|EDP57727.1| methionyl-tRNA formyltransferase [Vibrio sp. AND4]
          Length = 427

 Score = 40.1 bits (93), Expect = 0.11,   Method: Composition-based stats.
 Identities = 18/94 (19%), Positives = 35/94 (37%), Gaps = 3/94 (3%)

Query: 65  DLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVE 124
           D    + I +G +     +  +I++ L +K        +   ++  G+ +L     +P  
Sbjct: 36  DHALLQEICYGALRYLPRL-EMIANQLMDK-PLKGKQRVFHHLILVGIYQLSFMR-IPAH 92

Query: 125 VIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEE 158
             + E V    +         INAVL    R +E
Sbjct: 93  AAVGETVEGTKELKGPRLRGLINAVLRNYQRSQE 126


>gi|90581174|ref|ZP_01236973.1| Putative Sun protein [Vibrio angustum S14]
 gi|90437695|gb|EAS62887.1| Putative Sun protein [Vibrio angustum S14]
          Length = 426

 Score = 40.1 bits (93), Expect = 0.11,   Method: Composition-based stats.
 Identities = 21/139 (15%), Positives = 47/139 (33%), Gaps = 16/139 (11%)

Query: 20  RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79
           R  A + +YQ+   G S +  +                +      D    + I +GV+  
Sbjct: 4   RATAAKVIYQVVDQGQSLSAAL-------------PAAQQDIRERDHALLQEICYGVLRW 50

Query: 80  KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139
              ++ +  + + +         +   ++  G+ +L     +P    ++E V        
Sbjct: 51  LPRLESITQALMDK--PLKGKQRVFHHLILVGLYQLGYMR-IPAHAAVAETVNATKTLKK 107

Query: 140 GDEPKFINAVLDKVSRKEE 158
                 INA+L    R++E
Sbjct: 108 PQLRGLINAILRNYQRQQE 126


>gi|241668134|ref|ZP_04755712.1| tRNA and rRNA cytosine-C5-methylase, sun protein [Francisella
           philomiragia subsp. philomiragia ATCC 25015]
 gi|254876669|ref|ZP_05249379.1| tRNA and rRNA cytosine-C5-methylase [Francisella philomiragia
           subsp. philomiragia ATCC 25015]
 gi|254842690|gb|EET21104.1| tRNA and rRNA cytosine-C5-methylase [Francisella philomiragia
           subsp. philomiragia ATCC 25015]
          Length = 425

 Score = 40.1 bits (93), Expect = 0.11,   Method: Composition-based stats.
 Identities = 23/127 (18%), Positives = 46/127 (36%), Gaps = 8/127 (6%)

Query: 32  IIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCL 91
           I   S  +II     +         +E      D  + +++ +        ++ + S  L
Sbjct: 6   IAAKSILDIIDN--KHSLLTIEHKLIEHNLSDKDKSFVKLLCYEFFRNYYSLENVASLYL 63

Query: 92  TEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLD 151
            EK       +++  IL+  + E+ +    P    I+E V    +       K +N VL 
Sbjct: 64  AEKTKLKAKILVMLGILQ--IFEINQ----PHYASINETVAACKNLKILWAKKLVNGVLR 117

Query: 152 KVSRKEE 158
           ++ R  E
Sbjct: 118 QIVRDLE 124


>gi|261342758|ref|ZP_05970616.1| ribosomal RNA small subunit methyltransferase B [Enterobacter
           cancerogenus ATCC 35316]
 gi|288314937|gb|EFC53875.1| ribosomal RNA small subunit methyltransferase B [Enterobacter
           cancerogenus ATCC 35316]
          Length = 428

 Score = 40.1 bits (93), Expect = 0.11,   Method: Composition-based stats.
 Identities = 19/130 (14%), Positives = 48/130 (36%), Gaps = 12/130 (9%)

Query: 32  IIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCL 91
           +   +  ++I + ++    ++    ++      D    + +  GV+     ++ +IS  +
Sbjct: 9   MAAQAVEKVIEQGQS---LSNVLPPLQQKVSDKDKALLQELCFGVLRTLSQLEWMISRLM 65

Query: 92  TEKWSFSRLDMILCSI---LRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINA 148
                   +     S+   +  G  +L+    +P    ++E V  A           IN 
Sbjct: 66  ARP-----MTGKQRSVHYLIMVGFYQLLHTR-IPPHAALAETVEGAIAIKRPQLKGLING 119

Query: 149 VLDKVSRKEE 158
           VL +  R++E
Sbjct: 120 VLRQFQRQQE 129


>gi|307132808|ref|YP_003884824.1| Ribosomal RNA small subunit methyltransferase B [Dickeya dadantii
           3937]
 gi|306530337|gb|ADN00268.1| Ribosomal RNA small subunit methyltransferase B [Dickeya dadantii
           3937]
          Length = 431

 Score = 40.1 bits (93), Expect = 0.11,   Method: Composition-based stats.
 Identities = 19/101 (18%), Positives = 38/101 (37%), Gaps = 3/101 (2%)

Query: 58  ESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIE 117
           +      D    + I  GV+     +D  +   + +    +    +L  +L  G+ +LI 
Sbjct: 33  QRDISEKDRGLLQEICFGVLRVLPQLDWHLRQLMAK--PLTGKQKVLHYLLMVGLYQLIH 90

Query: 118 CHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEE 158
              +P    ++E V  A           IN VL +  R+++
Sbjct: 91  TR-IPPHAALAETVNGAVALKRPQLKGLINGVLRQFQRQQD 130


>gi|32491213|ref|NP_871467.1| hypothetical protein WGLp464 [Wigglesworthia glossinidia
          endosymbiont of Glossina brevipalpis]
 gi|25166420|dbj|BAC24610.1| nusB [Wigglesworthia glossinidia endosymbiont of Glossina
          brevipalpis]
          Length = 41

 Score = 40.1 bits (93), Expect = 0.11,   Method: Composition-based stats.
 Identities = 11/25 (44%), Positives = 12/25 (48%)

Query: 16 RGIARLAAVQALYQIDIIGCSTTEI 40
          R  AR  A+QALY   I      EI
Sbjct: 6  RSYARQCALQALYSWQISRNDAIEI 30


>gi|330447314|ref|ZP_08310964.1| ribosomal RNA small subunit methyltransferase B [Photobacterium
           leiognathi subsp. mandapamensis svers.1.1.]
 gi|328491505|dbj|GAA05461.1| ribosomal RNA small subunit methyltransferase B [Photobacterium
           leiognathi subsp. mandapamensis svers.1.1.]
          Length = 426

 Score = 40.1 bits (93), Expect = 0.11,   Method: Composition-based stats.
 Identities = 21/139 (15%), Positives = 47/139 (33%), Gaps = 16/139 (11%)

Query: 20  RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79
           R  A + +YQ+   G S +  +                +      D    + I +GV+  
Sbjct: 4   RATAAKVIYQVVDQGQSLSAAL-------------PAAQQDIRERDHALLQEICYGVLRW 50

Query: 80  KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139
              ++ +  + + +         +   ++  G+ +L     +P    ++E V        
Sbjct: 51  LPRLESITQALMDK--PLKGKQRVFHHLILVGLYQLGYMR-IPAHAAVAETVNATKTLKK 107

Query: 140 GDEPKFINAVLDKVSRKEE 158
                 INA+L    R++E
Sbjct: 108 PQLRGLINAILRNYQRQQE 126


>gi|261378986|ref|ZP_05983559.1| ribosomal RNA small subunit methyltransferase B [Neisseria cinerea
           ATCC 14685]
 gi|269144601|gb|EEZ71019.1| ribosomal RNA small subunit methyltransferase B [Neisseria cinerea
           ATCC 14685]
          Length = 419

 Score = 40.1 bits (93), Expect = 0.12,   Method: Composition-based stats.
 Identities = 23/126 (18%), Positives = 48/126 (38%), Gaps = 17/126 (13%)

Query: 34  GCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTE 93
           G +  +++++  T    A   L  +      D+ +      G       +  +++  L +
Sbjct: 20  GRNLQDVLAQIRT----AHPNLTAQENGALQDIAY------GCQRYLGSLKHMLAQMLKK 69

Query: 94  KWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVC-IAHDFFYGDEPKFINAVLDK 152
                  +  L S+L A + +L    +    V+ +E V  IA     G    F NA+L +
Sbjct: 70  --PID--NPQLESLLLAALYQLHYTRNATHAVV-NEAVESIAKI-GRGQYRSFANAILRR 123

Query: 153 VSRKEE 158
             R+ +
Sbjct: 124 FLRERD 129


>gi|254525327|ref|ZP_05137382.1| ribosomal RNA small subunit methyltransferase B [Stenotrophomonas
           sp. SKA14]
 gi|219722918|gb|EED41443.1| ribosomal RNA small subunit methyltransferase B [Stenotrophomonas
           sp. SKA14]
          Length = 443

 Score = 40.1 bits (93), Expect = 0.12,   Method: Composition-based stats.
 Identities = 19/100 (19%), Positives = 38/100 (38%), Gaps = 3/100 (3%)

Query: 65  DLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVE 124
           D      +   V+ R+   D  + S + +    S  D  L ++L  G  +L +   +P  
Sbjct: 52  DRALLEALCFAVLRRRSTYDAALQSWMQK--PLSARDADLRTLLMVGFAQL-DVLELPAH 108

Query: 125 VIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRSGC 164
             +S  V  A       +   +NA+L +  R+   ++   
Sbjct: 109 AALSATVDAARALGRERQAGLVNAILRRAQREGFPEQPAR 148


>gi|270264342|ref|ZP_06192608.1| hypothetical protein SOD_h00090 [Serratia odorifera 4Rx13]
 gi|270041478|gb|EFA14576.1| hypothetical protein SOD_h00090 [Serratia odorifera 4Rx13]
          Length = 429

 Score = 39.7 bits (92), Expect = 0.13,   Method: Composition-based stats.
 Identities = 23/139 (16%), Positives = 51/139 (36%), Gaps = 16/139 (11%)

Query: 20  RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79
           R  A +A+ Q+   G S + ++               ++      D    + +  G +  
Sbjct: 8   RSHAAKAIGQVLDQGQSLSTVL-------------PSLQKTISDKDRALLQELCFGTLRV 54

Query: 80  KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139
              ++  I   + +  +  +    L  +L  G+ +L+    +P   +++E V  A     
Sbjct: 55  LPQLEWCIQQLMAKPMTGKQ--RTLHYLLMVGLYQLLYTR-IPAHAVLAETVEGAVALKR 111

Query: 140 GDEPKFINAVLDKVSRKEE 158
                 IN VL +  R++E
Sbjct: 112 PQLKGLINGVLRQFQRQQE 130


>gi|295396524|ref|ZP_06806684.1| ribosomal RNA small subunit methyltransferase B [Brevibacterium
           mcbrellneri ATCC 49030]
 gi|294970642|gb|EFG46557.1| ribosomal RNA small subunit methyltransferase B [Brevibacterium
           mcbrellneri ATCC 49030]
          Length = 494

 Score = 39.7 bits (92), Expect = 0.14,   Method: Composition-based stats.
 Identities = 16/104 (15%), Positives = 38/104 (36%), Gaps = 7/104 (6%)

Query: 57  VESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELI 116
             +     D      + +G +  ++  D +I           +++  + + +R G  +++
Sbjct: 68  ERTRMSGPDAAMCTEMTYGTLRARRFYDAVIEKVSDR--PVDQIEAAVLNAMRLGAHQVL 125

Query: 117 ECHSVPVEVIISEYVCIAHDFFYGD----EPKFINAVLDKVSRK 156
               V     +SE V +               F+NAVL +++ K
Sbjct: 126 AMR-VADHAAVSETVGVISKNADTKIANRAAGFVNAVLRRITEK 168


>gi|224826197|ref|ZP_03699300.1| sun protein [Lutiella nitroferrum 2002]
 gi|224601834|gb|EEG08014.1| sun protein [Lutiella nitroferrum 2002]
          Length = 416

 Score = 39.7 bits (92), Expect = 0.15,   Method: Composition-based stats.
 Identities = 20/129 (15%), Positives = 42/129 (32%), Gaps = 5/129 (3%)

Query: 30  IDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISS 89
           I ++     E +    T                  +    + I +GV+        ++  
Sbjct: 4   IQLLAAGLLEKVEGGRTLTEALADAQRQAPDLTPAERGALQDIGYGVLRHLAEWRRVLRQ 63

Query: 90  CLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAV 149
            L +     +L+ +    L   + +L    +    V+ +E V +A     G     +NAV
Sbjct: 64  LLPKPLPEPQLERV----LIVALHQLEYTRAAQYAVV-NEAVTLAGRLARGRFKGLVNAV 118

Query: 150 LDKVSRKEE 158
           L    R+ +
Sbjct: 119 LRNYLRQRD 127


>gi|322831104|ref|YP_004211131.1| sun protein [Rahnella sp. Y9602]
 gi|321166305|gb|ADW72004.1| sun protein [Rahnella sp. Y9602]
          Length = 429

 Score = 39.7 bits (92), Expect = 0.15,   Method: Composition-based stats.
 Identities = 24/139 (17%), Positives = 50/139 (35%), Gaps = 16/139 (11%)

Query: 20  RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79
           R  A QA+ Q+   G S + ++               ++      D    + +  G +  
Sbjct: 8   RSIAAQAISQVLDKGLSLSTVL-------------PGLQKNVSEKDRGLLQELCFGTLRV 54

Query: 80  KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139
              ++  +   + +    +     L  +L  G+ +LI    +P   +++E V  A     
Sbjct: 55  LPQLEWCLQQLMAK--PLTGKQRTLHYLLMVGLYQLIHTR-IPAHAVLAETVDGAVALKR 111

Query: 140 GDEPKFINAVLDKVSRKEE 158
                 IN VL +  R++E
Sbjct: 112 PQLKGLINGVLRQFQRQQE 130


>gi|299768269|ref|YP_003730295.1| tRNA and rRNA cytosine-C5-methylase [Acinetobacter sp. DR1]
 gi|298698357|gb|ADI88922.1| tRNA and rRNA cytosine-C5-methylase [Acinetobacter sp. DR1]
          Length = 434

 Score = 39.7 bits (92), Expect = 0.15,   Method: Composition-based stats.
 Identities = 17/109 (15%), Positives = 43/109 (39%), Gaps = 5/109 (4%)

Query: 59  SVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIEC 118
           +     D   F  ++ G + +   +  +    L++    +  +  + + L  G+ +++ C
Sbjct: 39  NQVAERDRALFHELVLGTLRQWFALKSISLPLLSK--PLN--NETVETCLYVGLYQVL-C 93

Query: 119 HSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRSGCVSA 167
             +     ISE V       +      +NA+L + +R+ +  + G   A
Sbjct: 94  TRIAAHAAISETVDATKQLGFPALGGIVNAILRRATRETDDFQQGLQQA 142


>gi|162148166|ref|YP_001602627.1| ribosomal RNA small subunit methyltransferase B [Gluconacetobacter
           diazotrophicus PAl 5]
 gi|161786743|emb|CAP56326.1| putative ribosomal RNA small subunit methyltransferase B
           [Gluconacetobacter diazotrophicus PAl 5]
          Length = 433

 Score = 39.7 bits (92), Expect = 0.15,   Method: Composition-based stats.
 Identities = 13/80 (16%), Positives = 31/80 (38%), Gaps = 6/80 (7%)

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
           V+       +++   L ++        +  ++L  GV +++     P    +   V +A 
Sbjct: 70  VLRHMGTAGMVLEPFLKKEPPL----PV-RTVLLIGVAQILF-LDTPAHAAVGTAVSLAR 123

Query: 136 DFFYGDEPKFINAVLDKVSR 155
                     +NAVL +V++
Sbjct: 124 RRGLVPFAGLVNAVLRRVAQ 143


>gi|307822766|ref|ZP_07652997.1| sun protein [Methylobacter tundripaludum SV96]
 gi|307736370|gb|EFO07216.1| sun protein [Methylobacter tundripaludum SV96]
          Length = 435

 Score = 39.3 bits (91), Expect = 0.16,   Method: Composition-based stats.
 Identities = 22/101 (21%), Positives = 40/101 (39%), Gaps = 7/101 (6%)

Query: 58  ESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIE 117
            S+    D  + + + +GV  +   +D ++S  L +       D+   ++   G+ +L  
Sbjct: 30  PSIESSKDRAFIQALCYGVCRQYHRLDFILSQLLDK--PLKDTDVKSLAL--VGLYQLKF 85

Query: 118 CHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEE 158
               P    +SE V  A           INAVL    R++E
Sbjct: 86  MRVKPHA-AVSETVLAARK--KPWAKSLINAVLRTYLREQE 123


>gi|300024959|ref|YP_003757570.1| sun protein [Hyphomicrobium denitrificans ATCC 51888]
 gi|299526780|gb|ADJ25249.1| sun protein [Hyphomicrobium denitrificans ATCC 51888]
          Length = 468

 Score = 39.3 bits (91), Expect = 0.16,   Method: Composition-based stats.
 Identities = 27/145 (18%), Positives = 51/145 (35%), Gaps = 29/145 (20%)

Query: 18  IARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVM 77
           +AR  AV AL+ + +      ++ ++    R  A             D  + R+I   V+
Sbjct: 38  LARDVAVSALFSVLVEKRPFDDVFAKAAAARNLA-----------PRDRAFARLIATTVL 86

Query: 78  DRKQHIDLLISSCLTEKWS--FSRLDMILCSILRAGVLELIECHSVPVEVIISEYVC--- 132
             +  +  ++ + L +       RL+ IL +         +     P    IS  V    
Sbjct: 87  RNRGSLQAVLRTYLEKPLPEHLGRLEQILLA-----AAAQLLLIKTPPHAAISLAVDQCR 141

Query: 133 ---IAHDFFYGDEPKFINAVLDKVS 154
              +   F        +NAVL ++S
Sbjct: 142 ADRVGKRFGN-----LVNAVLRRLS 161


>gi|190576005|ref|YP_001973850.1| putative sun protein [Stenotrophomonas maltophilia K279a]
 gi|190013927|emb|CAQ47567.1| putative sun protein [Stenotrophomonas maltophilia K279a]
          Length = 443

 Score = 39.3 bits (91), Expect = 0.17,   Method: Composition-based stats.
 Identities = 18/100 (18%), Positives = 38/100 (38%), Gaps = 3/100 (3%)

Query: 65  DLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVE 124
           D      +   V+ R+   D  + + + +    S  D  L ++L  G  +L +   +P  
Sbjct: 52  DRALLEALCFAVLRRRSTYDAALQAWMQK--PLSARDADLRTLLMVGFAQL-DVLELPAH 108

Query: 125 VIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRSGC 164
             +S  V  A       +   +NA+L +  R+   ++   
Sbjct: 109 AALSATVDAARALGRERQAGLVNAILRRAQREGVPEQPAR 148


>gi|188535245|ref|YP_001909042.1| 16S rRNA methyltransferase B [Erwinia tasmaniensis Et1/99]
 gi|224493254|sp|B2VK95|RSMB_ERWT9 RecName: Full=Ribosomal RNA small subunit methyltransferase B;
           AltName: Full=16S rRNA m5C967 methyltransferase;
           AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
           rsmB
 gi|188030287|emb|CAO98176.1| rRNA methylase Sun [Erwinia tasmaniensis Et1/99]
          Length = 429

 Score = 39.3 bits (91), Expect = 0.17,   Method: Composition-based stats.
 Identities = 17/125 (13%), Positives = 44/125 (35%), Gaps = 9/125 (7%)

Query: 37  TTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWS 96
              I    E  +  ++     +      D    + + +GV+     ++ +I   ++    
Sbjct: 12  AQTIEKVVEQGQSLSNVLPAAQKSVGDKDAALLQELCYGVLRTLPQLEWVIGRLMSRP-- 69

Query: 97  FSRLDMILCSI---LRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKV 153
              +     ++   +  G+ +L+    +P    ++E V  A           IN VL + 
Sbjct: 70  ---MTGKQRAVHFLIMVGLYQLMFTR-IPAHAALAETVEGAVALKRPQLKGLINGVLRQF 125

Query: 154 SRKEE 158
            R+++
Sbjct: 126 QRQQD 130


>gi|116628135|ref|YP_820754.1| RNA-binding protein [Streptococcus thermophilus LMD-9]
 gi|116101412|gb|ABJ66558.1| tRNA and rRNA cytosine-C5-methylase [Streptococcus thermophilus
           LMD-9]
          Length = 442

 Score = 39.3 bits (91), Expect = 0.17,   Method: Composition-based stats.
 Identities = 26/152 (17%), Positives = 51/152 (33%), Gaps = 35/152 (23%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           +  AR  A++ L           E+  E   Y   A       S     D      I++G
Sbjct: 8   KKTARGQALEVL----------EEVFQE-GAYSNIALNARLSNSCLTDKDKALVTEIVYG 56

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVL----------ELIECHSVPVEV 125
            + RK  ++ +++  + ++                             +L     +P   
Sbjct: 57  TVARKITLEWILAHVIEDRDKLE-------------AWVYDLLLLSLYQLAYLDKIPSHA 103

Query: 126 IISEYVCIAHDFFYGDEP-KFINAVLDKVSRK 156
           ++++ V IA +        K +NAVL K+S +
Sbjct: 104 VVNDAVSIAKNRGNKKGAEKLVNAVLRKLSSQ 135


>gi|329295652|ref|ZP_08252988.1| 16S rRNA methyltransferase B [Plautia stali symbiont]
          Length = 428

 Score = 39.3 bits (91), Expect = 0.18,   Method: Composition-based stats.
 Identities = 17/103 (16%), Positives = 40/103 (38%), Gaps = 3/103 (2%)

Query: 57  VESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELI 116
            +    + D    + +  GV      ++ LI+  +      +    +L  ++  G+ +L+
Sbjct: 32  AQKTLANNDGALLQELCFGVTRTLPQLEALINKLMAR--PLTGKQRVLHYLIMVGLYQLL 89

Query: 117 ECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEI 159
               VP    ++E V  A      +    +N VL +  R+++ 
Sbjct: 90  YTR-VPPHAALAETVAGAEALKRANLKGLLNGVLRQFQRQQDA 131


>gi|312278741|gb|ADQ63398.1| Ribosomal RNA small subunit methyltransferase B [Streptococcus
           thermophilus ND03]
          Length = 440

 Score = 39.3 bits (91), Expect = 0.18,   Method: Composition-based stats.
 Identities = 26/152 (17%), Positives = 51/152 (33%), Gaps = 35/152 (23%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           +  AR  A++ L           E+  E   Y   A       S     D      I++G
Sbjct: 6   KKTARGQALEVL----------EEVFQE-GAYSNIALNARLSNSCLTDKDKALVTEIVYG 54

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVL----------ELIECHSVPVEV 125
            + RK  ++ +++  + ++                             +L     +P   
Sbjct: 55  TVARKITLEWILAHVIEDRDKLE-------------AWVYDLLLLSLYQLAYLDKIPSHA 101

Query: 126 IISEYVCIAHDFFYGDEP-KFINAVLDKVSRK 156
           ++++ V IA +        K +NAVL K+S +
Sbjct: 102 VVNDAVSIAKNRGNKKGAEKLVNAVLRKLSSQ 133


>gi|55821413|ref|YP_139855.1| RNA-binding protein [Streptococcus thermophilus LMG 18311]
 gi|55823338|ref|YP_141779.1| RNA-binding protein [Streptococcus thermophilus CNRZ1066]
 gi|55737398|gb|AAV61040.1| RNA-binding protein [Streptococcus thermophilus LMG 18311]
 gi|55739323|gb|AAV62964.1| RNA-binding protein [Streptococcus thermophilus CNRZ1066]
          Length = 443

 Score = 39.3 bits (91), Expect = 0.18,   Method: Composition-based stats.
 Identities = 26/152 (17%), Positives = 51/152 (33%), Gaps = 35/152 (23%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           +  AR  A++ L           E+  E   Y   A       S     D      I++G
Sbjct: 9   KKTARGQALEVL----------EEVFQE-GAYSNIALNARLSNSCLTDKDKALVTEIVYG 57

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVL----------ELIECHSVPVEV 125
            + RK  ++ +++  + ++                             +L     +P   
Sbjct: 58  TVARKITLEWILAHVIEDRDKLE-------------AWVYDLLLLSLYQLAYLDKIPSHA 104

Query: 126 IISEYVCIAHDFFYGDEP-KFINAVLDKVSRK 156
           ++++ V IA +        K +NAVL K+S +
Sbjct: 105 VVNDAVSIAKNRGNKKGAEKLVNAVLRKLSSQ 136


>gi|149375620|ref|ZP_01893389.1| Fmu, rRNA SAM-dependent methyltransferase [Marinobacter algicola
           DG893]
 gi|149360022|gb|EDM48477.1| Fmu, rRNA SAM-dependent methyltransferase [Marinobacter algicola
           DG893]
          Length = 433

 Score = 39.3 bits (91), Expect = 0.18,   Method: Composition-based stats.
 Identities = 12/102 (11%), Positives = 32/102 (31%), Gaps = 3/102 (2%)

Query: 59  SVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIEC 118
                 +    + + +G       +D  + + L +     + + ++  ++   + +L   
Sbjct: 34  GDVADNERPPLQALCYGTCRWFHRLDGELQARLNK--PLRKSNRVVHHLMLVALFQLRFS 91

Query: 119 HSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIK 160
                  I++E V              +N VL    R+ E  
Sbjct: 92  QQATYA-ILNETVEACRALDKPHLTGLVNGVLRAAEREGEPP 132


>gi|119475266|ref|ZP_01615619.1| sun protein [marine gamma proteobacterium HTCC2143]
 gi|119451469|gb|EAW32702.1| sun protein [marine gamma proteobacterium HTCC2143]
          Length = 434

 Score = 39.3 bits (91), Expect = 0.18,   Method: Composition-based stats.
 Identities = 21/101 (20%), Positives = 39/101 (38%), Gaps = 3/101 (2%)

Query: 58  ESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIE 117
           E      D   +R + +GV+     ++  I+  L +K      D  +  ++  G+ +L E
Sbjct: 33  EQQVAEKDRSLYRQLCYGVLRFYPKLNG-IAKLLIQK-PLKGKDHDVLMLVLIGIYQLSE 90

Query: 118 CHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEE 158
              +P    +S  V             F+N VL +  R E+
Sbjct: 91  MR-IPDHAAVSTTVNATKSLKKHWAKGFVNGVLRQWQRNEQ 130


>gi|157372746|ref|YP_001480735.1| 16S rRNA methyltransferase B [Serratia proteamaculans 568]
 gi|224493268|sp|A8GKG7|RSMB_SERP5 RecName: Full=Ribosomal RNA small subunit methyltransferase B;
           AltName: Full=16S rRNA m5C967 methyltransferase;
           AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
           rsmB
 gi|157324510|gb|ABV43607.1| sun protein [Serratia proteamaculans 568]
          Length = 429

 Score = 39.3 bits (91), Expect = 0.18,   Method: Composition-based stats.
 Identities = 17/104 (16%), Positives = 39/104 (37%), Gaps = 3/104 (2%)

Query: 55  LDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLE 114
             ++      D    + +  G +     ++  I   + +  +  +    L  +L  G+ +
Sbjct: 30  PSLQKTISDKDRALLQELCFGTLRVLPQLEWCIQQLMAKPMTGKQ--RTLHYLLMVGLYQ 87

Query: 115 LIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEE 158
           L+    +P   +++E V  A           IN VL +  R++E
Sbjct: 88  LLYTR-IPAHAVLAETVEGAVALKRPQLKGLINGVLRQFQRQQE 130


>gi|259417637|ref|ZP_05741556.1| Fmu [Silicibacter sp. TrichCH4B]
 gi|259346543|gb|EEW58357.1| Fmu [Silicibacter sp. TrichCH4B]
          Length = 436

 Score = 39.3 bits (91), Expect = 0.19,   Method: Composition-based stats.
 Identities = 27/139 (19%), Positives = 52/139 (37%), Gaps = 21/139 (15%)

Query: 17  GIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGV 76
             AR AAV  L           +++ E       A+ +  V       D    + +   V
Sbjct: 21  SDARRAAVTLL----------DKVLGEGL---LLAECQTQVLERLEPADRARAQRLALEV 67

Query: 77  MDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCI-AH 135
           +   +  D +++  L +  +       + + LR G +EL  C       ++++ V + A 
Sbjct: 68  LRSLERADRVLAKHLRKPPALH-----VRNALRLGTVEL--CSGGAAHGVVNDIVNLVAR 120

Query: 136 DFFYGDEPKFINAVLDKVS 154
              +      +NAVL KV+
Sbjct: 121 HRRHAQLKGLVNAVLRKVA 139


>gi|260574499|ref|ZP_05842503.1| Fmu (Sun) domain protein [Rhodobacter sp. SW2]
 gi|259023395|gb|EEW26687.1| Fmu (Sun) domain protein [Rhodobacter sp. SW2]
          Length = 427

 Score = 39.3 bits (91), Expect = 0.19,   Method: Composition-based stats.
 Identities = 19/97 (19%), Positives = 36/97 (37%), Gaps = 11/97 (11%)

Query: 65  DLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVE 124
           D    + +   V+   +  D ++   L ++      + +    LR  V+EL   H+    
Sbjct: 48  DRARAQRLALAVLRHIEPADRVLKPHLRKEPP----EAV-RIALRLAVVELAVEHAAAHG 102

Query: 125 VIISEYVCI---AHDFFYGDEPKFINAVLDKVSRKEE 158
           V+ +  V +               +NAVL KV+   E
Sbjct: 103 VV-NAAVSLMRLGKR--TTHMAGLVNAVLRKVAEVPE 136


>gi|332976014|gb|EGK12885.1| rRNA (cytosine-C(5)-)-methyltransferase [Psychrobacter sp.
           1501(2011)]
          Length = 530

 Score = 39.3 bits (91), Expect = 0.19,   Method: Composition-based stats.
 Identities = 15/94 (15%), Positives = 37/94 (39%), Gaps = 5/94 (5%)

Query: 65  DLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVE 124
           D  +   ++   +      + L+ S L++      +++   + ++ G+ +L+   +V   
Sbjct: 50  DKGFAHALLLTTLRHWYATERLLDS-LSDN-PIDEIEV--RTTIQVGITQLLY-LNVADH 104

Query: 125 VIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEE 158
             I E V              +NA+L KV++   
Sbjct: 105 AAIHETVEAVKHIDLARASGLVNAILRKVAKNPN 138


>gi|195028738|ref|XP_001987233.1| GH20082 [Drosophila grimshawi]
 gi|193903233|gb|EDW02100.1| GH20082 [Drosophila grimshawi]
          Length = 674

 Score = 39.3 bits (91), Expect = 0.19,   Method: Composition-based stats.
 Identities = 15/82 (18%), Positives = 34/82 (41%), Gaps = 4/82 (4%)

Query: 5   DNKKDLKLSHRRGIARLAA--VQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYL 62
               D K + +R +    A  +QA++Q+ + G     ++ E         ++L+      
Sbjct: 118 PKHPDYKYNAKRSVYGELAAPLQAVFQMPLTGPEIFAVLKELRGRYRRELSKLNSLGGKY 177

Query: 63  HVDLEWFRVI--IHGVMDRKQH 82
              L +F  +  + GV++ K+ 
Sbjct: 178 KSRLWYFEKMHFLRGVIEHKRA 199


>gi|167627567|ref|YP_001678067.1| tRNA and rRNA cytosine-C5-methylase, sun protein [Francisella
           philomiragia subsp. philomiragia ATCC 25017]
 gi|167597568|gb|ABZ87566.1| tRNA and rRNA cytosine-C5-methylase, sun protein [Francisella
           philomiragia subsp. philomiragia ATCC 25017]
          Length = 425

 Score = 39.3 bits (91), Expect = 0.19,   Method: Composition-based stats.
 Identities = 23/127 (18%), Positives = 47/127 (37%), Gaps = 8/127 (6%)

Query: 32  IIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCL 91
           +   S  +II     Y         +E      D  + +++ +        ++ + S  L
Sbjct: 6   VAAKSILDIIDN--RYSLLTIEHKLIEHNLSDKDKSFVKLLCYEFFRNYYSLENVASLYL 63

Query: 92  TEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLD 151
            EK   +   +++  IL+  + E+ +    P    I+E V    +       K +N VL 
Sbjct: 64  AEKTKLNAKILVMLGILQ--IFEINQ----PHYASINETVSACKNLKILWAKKLVNGVLR 117

Query: 152 KVSRKEE 158
           ++ R  E
Sbjct: 118 QIVRDLE 124


>gi|330890235|gb|EGH22896.1| 16S rRNA methyltransferase B [Pseudomonas syringae pv. mori str.
           301020]
          Length = 448

 Score = 39.3 bits (91), Expect = 0.19,   Method: Composition-based stats.
 Identities = 20/95 (21%), Positives = 33/95 (34%), Gaps = 3/95 (3%)

Query: 65  DLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVE 124
           D    + +  G    +  +  L +  L +   F   D  + ++L  G+ +L     +P  
Sbjct: 36  DRGLTQDLAFGTARWQPRLSALAAKLLQK--PFKAADADVEALLLVGLYQLFYSR-IPAH 92

Query: 125 VIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEI 159
             I E V  A           +NAVL    R  E 
Sbjct: 93  AAIGETVGCAEKLKKTWAKGLLNAVLRNAQRDGEA 127


>gi|54310619|ref|YP_131639.1| putative Sun protein [Photobacterium profundum SS9]
 gi|46915062|emb|CAG21837.1| Putative Sun protein [Photobacterium profundum SS9]
          Length = 431

 Score = 39.3 bits (91), Expect = 0.20,   Method: Composition-based stats.
 Identities = 26/139 (18%), Positives = 49/139 (35%), Gaps = 16/139 (11%)

Query: 20  RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79
           R AA Q ++Q+   G S +  +                +      D    + I +GV+  
Sbjct: 4   RAAAAQVVFQVVDQGQSLSAAL-------------PAAQQNIRERDHALLQEICYGVLRW 50

Query: 80  KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139
              +   I++ L +K            ++  G+ +L     +P    ++E V    D   
Sbjct: 51  LPRL-ESITTHLMDK-PLKGKQRAFHHLILVGLYQLGHMR-IPAHAAVAETVNATKDLKK 107

Query: 140 GDEPKFINAVLDKVSRKEE 158
                 INA+L    R++E
Sbjct: 108 TQLRGLINAILRNYQRQQE 126


>gi|260599608|ref|YP_003212179.1| 16S rRNA methyltransferase B [Cronobacter turicensis z3032]
 gi|260218785|emb|CBA34133.1| Ribosomal RNA small subunit methyltransferase B [Cronobacter
           turicensis z3032]
          Length = 425

 Score = 39.3 bits (91), Expect = 0.20,   Method: Composition-based stats.
 Identities = 24/142 (16%), Positives = 51/142 (35%), Gaps = 22/142 (15%)

Query: 20  RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79
           R  A QA+ Q+   G S + ++               ++      D    + +  GV+  
Sbjct: 4   RSLAAQAIEQVVEKGQSLSTVL-------------PPLQHKVSDKDKALLQELCFGVLRT 50

Query: 80  KQHIDLLISSCLTEKWSFSRLDMILCSI---LRAGVLELIECHSVPVEVIISEYVCIAHD 136
               + LI+  ++       +     +I   +  G+ +L+    +P    ++E V  A  
Sbjct: 51  LSQQEWLINKLMSRP-----MTGKQRTIHYLIMVGLYQLLYTR-IPPHAALAETVEGAVA 104

Query: 137 FFYGDEPKFINAVLDKVSRKEE 158
                    IN VL +  R+++
Sbjct: 105 IKRMQFKGLINGVLRQFQRQQD 126


>gi|238758791|ref|ZP_04619965.1| Ribosomal RNA small subunit methyltransferase B [Yersinia aldovae
           ATCC 35236]
 gi|238703088|gb|EEP95631.1| Ribosomal RNA small subunit methyltransferase B [Yersinia aldovae
           ATCC 35236]
          Length = 429

 Score = 39.3 bits (91), Expect = 0.20,   Method: Composition-based stats.
 Identities = 23/138 (16%), Positives = 47/138 (34%), Gaps = 16/138 (11%)

Query: 20  RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79
           R  A +A+ Q+   G S + ++ E              +      D    + +  G +  
Sbjct: 8   RSIAAKAISQVLDQGQSLSTVLPEL-------------QKNISDKDRALLQELCFGALRV 54

Query: 80  KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139
              ++  I   +      +    I   ++  G+ +LI    +P    ++E V  A     
Sbjct: 55  LPQLEWCIQQLMAR--PLTGKQRIFHYLIMVGLYQLIYTR-IPPHAALAETVEGATALKR 111

Query: 140 GDEPKFINAVLDKVSRKE 157
                 IN VL +  R++
Sbjct: 112 PQLKGLINGVLRQFQRQQ 129


>gi|251788002|ref|YP_003002723.1| 16S rRNA methyltransferase B [Dickeya zeae Ech1591]
 gi|247536623|gb|ACT05244.1| sun protein [Dickeya zeae Ech1591]
          Length = 431

 Score = 39.3 bits (91), Expect = 0.20,   Method: Composition-based stats.
 Identities = 18/96 (18%), Positives = 34/96 (35%), Gaps = 3/96 (3%)

Query: 58  ESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIE 117
           +      D    + I  GV+     +D  +   + +    +    +L  +L  G+ +LI 
Sbjct: 33  QRDISEKDRGLLQEICFGVLRVLPQLDWYLRQLMAK--PLTGKQKVLHYLLMVGIYQLIH 90

Query: 118 CHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKV 153
              +P    ++E V  A           IN VL + 
Sbjct: 91  TR-IPPHAALAETVNAAVTLKRPQLKGLINGVLRQF 125


>gi|260775013|ref|ZP_05883913.1| ribosomal RNA small subunit methyltransferase B [Vibrio
           coralliilyticus ATCC BAA-450]
 gi|260609103|gb|EEX35262.1| ribosomal RNA small subunit methyltransferase B [Vibrio
           coralliilyticus ATCC BAA-450]
          Length = 426

 Score = 39.3 bits (91), Expect = 0.20,   Method: Composition-based stats.
 Identities = 22/139 (15%), Positives = 44/139 (31%), Gaps = 16/139 (11%)

Query: 20  RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79
           R AA   L+Q+   G S +  +                +      D    + I +G +  
Sbjct: 4   RAAAANVLFQVVDKGQSLSNAL-------------PAAQQQVKPRDQALLQEICYGSLRY 50

Query: 80  KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139
              ++ + +  + +         +   ++  G+ +L     +P    + E V        
Sbjct: 51  LPRLESIANELMDK--PLKGKQRVFHHLILVGIYQLSFMR-IPAHAAVGETVEGTKTLKG 107

Query: 140 GDEPKFINAVLDKVSRKEE 158
                 INAVL    R +E
Sbjct: 108 PRLRGLINAVLRNYQRNQE 126


>gi|237801648|ref|ZP_04590109.1| 16S rRNA methyltransferase B [Pseudomonas syringae pv. oryzae str.
           1_6]
 gi|331024507|gb|EGI04563.1| 16S rRNA methyltransferase B [Pseudomonas syringae pv. oryzae str.
           1_6]
          Length = 441

 Score = 39.3 bits (91), Expect = 0.20,   Method: Composition-based stats.
 Identities = 20/95 (21%), Positives = 33/95 (34%), Gaps = 3/95 (3%)

Query: 65  DLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVE 124
           D    + +  G    +  +  L +  L +   F   D  + ++L  G+ +L     +P  
Sbjct: 36  DRGLTQDLAFGTARWQPRLSALAAKLLQK--PFKAADADVEALLLVGLYQLFYSR-IPPH 92

Query: 125 VIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEI 159
             I E V  A           +NAVL    R  E 
Sbjct: 93  AAIGETVGCADKLKKPWAKGLLNAVLRNAQRDGEA 127


>gi|254515962|ref|ZP_05128022.1| ribosomal RNA small subunit methyltransferase B [gamma
           proteobacterium NOR5-3]
 gi|219675684|gb|EED32050.1| ribosomal RNA small subunit methyltransferase B [gamma
           proteobacterium NOR5-3]
          Length = 433

 Score = 39.3 bits (91), Expect = 0.20,   Method: Composition-based stats.
 Identities = 25/123 (20%), Positives = 43/123 (34%), Gaps = 3/123 (2%)

Query: 37  TTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWS 96
              II+E               ++    D    R I  G + +   +D L+   L +   
Sbjct: 11  AARIIAEVLRGDSLDRALESHLTILPGRDQPLCREICFGTLRQYPRLDALLGQLLQK--P 68

Query: 97  FSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRK 156
               D  + ++  AG+ +L     +P    +S  V  A           +NAVL +  R+
Sbjct: 69  LRAKDRDVHALALAGLYQLTSMR-IPAHAAVSATVDAATVLKKRQLSGLLNAVLRRFQRE 127

Query: 157 EEI 159
           EE 
Sbjct: 128 EEA 130


>gi|194367355|ref|YP_002029965.1| sun protein [Stenotrophomonas maltophilia R551-3]
 gi|194350159|gb|ACF53282.1| sun protein [Stenotrophomonas maltophilia R551-3]
          Length = 443

 Score = 38.9 bits (90), Expect = 0.21,   Method: Composition-based stats.
 Identities = 18/100 (18%), Positives = 37/100 (37%), Gaps = 3/100 (3%)

Query: 65  DLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVE 124
           D      +   V+ R+   D  +   + +    S  D  L ++L  G  +L +   +P  
Sbjct: 52  DRALLEALCFAVLRRRSTYDAALQGWMQK--PLSARDADLRTLLMVGFAQL-DVLELPAH 108

Query: 125 VIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRSGC 164
             +S  V  A       +   +NA+L +  R+   ++   
Sbjct: 109 AALSATVDAARALGRERQAGLVNAILRRAQREGFPEQPAR 148


>gi|330898595|gb|EGH30014.1| 16S rRNA methyltransferase B [Pseudomonas syringae pv. japonica
           str. M301072PT]
          Length = 226

 Score = 38.9 bits (90), Expect = 0.21,   Method: Composition-based stats.
 Identities = 21/95 (22%), Positives = 34/95 (35%), Gaps = 3/95 (3%)

Query: 65  DLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVE 124
           D    + +  G    +  +  L +  L +   F   D  + ++L  G+ +L     +P  
Sbjct: 23  DRGLTQDLAFGTARWQPRLSGLAAKLLQK--PFKAADADVEALLLVGLYQLFYSR-IPAH 79

Query: 125 VIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEI 159
             I E V  A           +NAVL  V R  E 
Sbjct: 80  AAIGETVGCADKLKKPWAKGLLNAVLRNVQRDGEA 114


>gi|330861820|emb|CBX71992.1| ribosomal RNA small subunit methyltransferase B [Yersinia
           enterocolitica W22703]
          Length = 292

 Score = 38.9 bits (90), Expect = 0.22,   Method: Composition-based stats.
 Identities = 21/138 (15%), Positives = 48/138 (34%), Gaps = 16/138 (11%)

Query: 20  RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79
           R  A +A+ Q+   G S + ++               ++      D    + +  G +  
Sbjct: 8   RSIAAKAISQVLDQGQSLSTVL-------------PGLQKSISDKDRALLQELCFGTLRV 54

Query: 80  KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139
              ++  I   +    +  +   +   ++  G+ +LI    +P    ++E V  A     
Sbjct: 55  LPQLEWCIQQLMARPMTGKQ--RVFHYLIMVGLYQLIYTR-IPPHAALAETVEGATALKR 111

Query: 140 GDEPKFINAVLDKVSRKE 157
                 IN VL +  R++
Sbjct: 112 PQLKGLINGVLRQFQRQQ 129


>gi|255261461|ref|ZP_05340803.1| rRNA methyltransferase RsmB [Thalassiobium sp. R2A62]
 gi|255103796|gb|EET46470.1| rRNA methyltransferase RsmB [Thalassiobium sp. R2A62]
          Length = 425

 Score = 38.9 bits (90), Expect = 0.22,   Method: Composition-based stats.
 Identities = 27/143 (18%), Positives = 49/143 (34%), Gaps = 21/143 (14%)

Query: 20  RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHV-DLEWFRVIIHGVMD 78
           R AAV  L           +II E    R  ++        +L   D    + +    + 
Sbjct: 9   RRAAVHLL----------DQIIDE---GRLMSELIGGGALKHLDAGDTARAQRLTVETLR 55

Query: 79  RKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCI-AHDF 137
                D ++   L  K         + ++LR G +E+    +    V+ +  V I +   
Sbjct: 56  GLDRADRMLKPFLKRKP-----GGTVMNVLRLGTVEICAEGAAAHGVV-NSAVEIVSKSQ 109

Query: 138 FYGDEPKFINAVLDKVSRKEEIK 160
                   +NAVL +V+ +   K
Sbjct: 110 RTSAMKGLVNAVLRRVAEQGSEK 132


>gi|114330411|ref|YP_746633.1| sun protein [Nitrosomonas eutropha C91]
 gi|114307425|gb|ABI58668.1| sun protein [Nitrosomonas eutropha C91]
          Length = 426

 Score = 38.9 bits (90), Expect = 0.23,   Method: Composition-based stats.
 Identities = 23/137 (16%), Positives = 44/137 (32%), Gaps = 17/137 (12%)

Query: 21  LAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRK 80
           L A+QA+ ++   G +  E++            +               + I +G +   
Sbjct: 6   LLAIQAIGEV-FAGANLNEVLRNIWQINSRLTPQQRGA----------IQDIAYGTLRHY 54

Query: 81  QHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFF-Y 139
             +D ++   L +       D  L  +L   + +L      P   I+   V  +      
Sbjct: 55  GQLDAILHQLLNKPAQ----DKSLHYLLAIALYQLCYSK-APAHAIVDHAVSSSRKITRN 109

Query: 140 GDEPKFINAVLDKVSRK 156
                 INAVL    R+
Sbjct: 110 PAASGLINAVLRNFMRQ 126


>gi|171914122|ref|ZP_02929592.1| hypothetical protein VspiD_23125 [Verrucomicrobium spinosum DSM 4136]
          Length = 2202

 Score = 38.9 bits (90), Expect = 0.24,   Method: Composition-based stats.
 Identities = 15/77 (19%), Positives = 29/77 (37%), Gaps = 23/77 (29%)

Query: 62   LHVDLEWFRVIIHGVMDRKQH--------IDLLISSCLTEKWSFSRLDMILCSIL----- 108
               D  +F  ++   +  K+         +D  +   L E W +SRL+++  ++L     
Sbjct: 1241 AKKDPAFFTKVVKPYLANKKDKTFMDEFLLDARLDRYL-EPWRYSRLNVVERALLAQRLP 1299

Query: 109  ----RAG-----VLELI 116
                RA        EL+
Sbjct: 1300 GEAARAARHLRESWELL 1316


>gi|330507424|ref|YP_004383852.1| hypothetical protein MCON_1351 [Methanosaeta concilii GP-6]
 gi|328928232|gb|AEB68034.1| conserved hypothetical protein [Methanosaeta concilii GP-6]
          Length = 436

 Score = 38.9 bits (90), Expect = 0.24,   Method: Composition-based stats.
 Identities = 29/131 (22%), Positives = 48/131 (36%), Gaps = 25/131 (19%)

Query: 40  IISEYETYRFCADTELDVESVYLHVDLEWFRVIIH--------GVMDRKQHIDLLISSCL 91
           I   Y      A   +  E V   +D   F  ++         G+++   + D LI+ C 
Sbjct: 97  IFDRYPFESSMAAERVSGEEVLKLLDYPAFFDLLKLPLPESRAGILEALAN-DSLIAPCE 155

Query: 92  TEKWSFSRLDMILCSILRAGVLELIECHSVPVEVI----------ISEYVCIAHDFFYGD 141
              W  + L  IL +  R      ++    P+ VI          I EYV +   +  G 
Sbjct: 156 ASGWDITNLGAILLA-KRIDSFTALKRK--PIRVIQYRGNNRIETIKEYV-LVKGYASGF 211

Query: 142 EP--KFINAVL 150
           E   ++IN +L
Sbjct: 212 EGLIEYINGLL 222


>gi|149912797|ref|ZP_01901331.1| ribosomal RNA small subunit methyltransferase B, putative
           [Roseobacter sp. AzwK-3b]
 gi|149813203|gb|EDM73029.1| ribosomal RNA small subunit methyltransferase B, putative
           [Roseobacter sp. AzwK-3b]
          Length = 427

 Score = 38.9 bits (90), Expect = 0.25,   Method: Composition-based stats.
 Identities = 27/139 (19%), Positives = 49/139 (35%), Gaps = 24/139 (17%)

Query: 19  ARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMD 78
           AR +AV  L Q+   G   +++IS     R                D    + +    + 
Sbjct: 8   ARRSAVHLLDQVLGEGRLMSDLISSGALDRL------------DPADRARAQRLATDTLR 55

Query: 79  RKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA---H 135
             +  D L+   L +          + +ILR G +EL          ++++ V +     
Sbjct: 56  GIERADRLLKRHLRKPPPLH-----VFNILRLGTVELCMGGDAHG--VVNDLVALVGSHR 108

Query: 136 DFFYGDEPKFINAVLDKVS 154
            +        INAVL K++
Sbjct: 109 RYGNLK--GLINAVLRKMA 125


>gi|332163229|ref|YP_004299806.1| 16S rRNA methyltransferase B [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
 gi|318607711|emb|CBY29209.1| ribosomal RNA small subunit methyltransferase B [Yersinia
           enterocolitica subsp. palearctica Y11]
 gi|325667459|gb|ADZ44103.1| 16S rRNA methyltransferase B [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
          Length = 429

 Score = 38.9 bits (90), Expect = 0.26,   Method: Composition-based stats.
 Identities = 21/138 (15%), Positives = 48/138 (34%), Gaps = 16/138 (11%)

Query: 20  RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79
           R  A +A+ Q+   G S + ++               ++      D    + +  G +  
Sbjct: 8   RSIAAKAISQVLDQGQSLSTVL-------------PGLQKSISDKDRALLQELCFGTLRV 54

Query: 80  KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139
              ++  I   +    +  +   +   ++  G+ +LI    +P    ++E V  A     
Sbjct: 55  LPQLEWCIQQLMARPMTGKQ--RVFHYLIMVGLYQLIYTR-IPPHAALAETVEGATALKR 111

Query: 140 GDEPKFINAVLDKVSRKE 157
                 IN VL +  R++
Sbjct: 112 PQLKGLINGVLRQFQRQQ 129


>gi|260774556|ref|ZP_05883469.1| ribosomal RNA small subunit methyltransferase B [Vibrio
           metschnikovii CIP 69.14]
 gi|260610462|gb|EEX35668.1| ribosomal RNA small subunit methyltransferase B [Vibrio
           metschnikovii CIP 69.14]
          Length = 426

 Score = 38.9 bits (90), Expect = 0.27,   Method: Composition-based stats.
 Identities = 24/140 (17%), Positives = 44/140 (31%), Gaps = 16/140 (11%)

Query: 20  RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79
           R AA   L+Q+   G S +  +                +      D    + I +G +  
Sbjct: 4   RAAAANVLFQVVDKGHSLSHAL-------------PAAQKTIRPRDHALLQEICYGALRY 50

Query: 80  KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139
              +   I+  L +         +   ++  G+ +L     +P    ++E V        
Sbjct: 51  LPRL-ESIAGQLMDN-PLKGKKRVFHHLILVGLYQLSYMR-IPSHAAVAETVEATKTLRG 107

Query: 140 GDEPKFINAVLDKVSRKEEI 159
                 INAVL    R +E 
Sbjct: 108 PSLSGLINAVLRSYLRDQEA 127


>gi|77413313|ref|ZP_00789508.1| sun protein [Streptococcus agalactiae 515]
 gi|77160627|gb|EAO71743.1| sun protein [Streptococcus agalactiae 515]
          Length = 426

 Score = 38.5 bits (89), Expect = 0.27,   Method: Composition-based stats.
 Identities = 23/113 (20%), Positives = 41/113 (36%), Gaps = 30/113 (26%)

Query: 58  ESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLEL-- 115
           +S     D      I++G + RK  ++  +S  +           +    L     EL  
Sbjct: 23  KSRLSDKDRALVTEIVYGTVARKITLEWYLSHFI-----------VDRDKL-----ELWV 66

Query: 116 -----------IECHSVPVEVIISEYVCIAHDFFYGDEP-KFINAVLDKVSRK 156
                      +   ++P   I+++ V IA +        K INAVL +VS +
Sbjct: 67  YHLLLLSLYQLLYLDNIPDHAIVNDAVTIAKNRGNKKGAEKLINAVLRRVSSE 119


>gi|238752659|ref|ZP_04614130.1| Ribosomal RNA small subunit methyltransferase B [Yersinia rohdei
           ATCC 43380]
 gi|238709086|gb|EEQ01333.1| Ribosomal RNA small subunit methyltransferase B [Yersinia rohdei
           ATCC 43380]
          Length = 429

 Score = 38.5 bits (89), Expect = 0.28,   Method: Composition-based stats.
 Identities = 21/138 (15%), Positives = 47/138 (34%), Gaps = 16/138 (11%)

Query: 20  RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79
           R  A +A+ Q+   G S + ++               +       D    + +  G +  
Sbjct: 8   RSIAAKAISQVLDQGQSLSTVL-------------PGLNKSISDKDRALLQELCFGTLRV 54

Query: 80  KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139
              ++  I   +    +  +   +   ++  G+ +LI    +P    ++E V  A     
Sbjct: 55  LPQLEWCIQQLMARPMTGKQ--RVFHYLIMVGLYQLIYTR-IPPHAALAETVEGATALKR 111

Query: 140 GDEPKFINAVLDKVSRKE 157
                 IN VL +  R++
Sbjct: 112 PQLKGLINGVLRQFQRQQ 129


>gi|115488572|ref|NP_001066773.1| Os12g0481400 [Oryza sativa Japonica Group]
 gi|77555694|gb|ABA98490.1| NB-ARC domain containing protein [Oryza sativa Japonica Group]
 gi|113649280|dbj|BAF29792.1| Os12g0481400 [Oryza sativa Japonica Group]
          Length = 1504

 Score = 38.5 bits (89), Expect = 0.28,   Method: Composition-based stats.
 Identities = 18/80 (22%), Positives = 35/80 (43%), Gaps = 3/80 (3%)

Query: 25  QALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHID 84
           Q L Q+  +     +++ E + +R   + +   E+V    D E  R ++ G+    +H  
Sbjct: 66  QLLSQLRDLAYDADDVLDELDYFRIQDELDGTYEAVD---DAEEERGLVRGLALHARHTA 122

Query: 85  LLISSCLTEKWSFSRLDMIL 104
             I+  LT KW+   L  + 
Sbjct: 123 RAIARKLTCKWNADALVPVD 142


>gi|77408116|ref|ZP_00784863.1| sun protein [Streptococcus agalactiae COH1]
 gi|77173300|gb|EAO76422.1| sun protein [Streptococcus agalactiae COH1]
          Length = 426

 Score = 38.5 bits (89), Expect = 0.28,   Method: Composition-based stats.
 Identities = 23/113 (20%), Positives = 41/113 (36%), Gaps = 30/113 (26%)

Query: 58  ESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLEL-- 115
           +S     D      I++G + RK  ++  +S  +           +    L     EL  
Sbjct: 23  KSRLSDKDRALVTEIVYGTVARKITLEWYLSHFI-----------VDRDKL-----ELWV 66

Query: 116 -----------IECHSVPVEVIISEYVCIAHDFFYGDEP-KFINAVLDKVSRK 156
                      +   ++P   I+++ V IA +        K INAVL +VS +
Sbjct: 67  YHLLLLSLYQLLYLDNIPDHAIVNDAVTIAKNRGNKKGAEKLINAVLRRVSSE 119


>gi|123444066|ref|YP_001008036.1| 16S rRNA methyltransferase B [Yersinia enterocolitica subsp.
           enterocolitica 8081]
 gi|224493291|sp|A1JRZ3|RSMB_YERE8 RecName: Full=Ribosomal RNA small subunit methyltransferase B;
           AltName: Full=16S rRNA m5C967 methyltransferase;
           AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
           rsmB
 gi|122091027|emb|CAL13910.1| conserved hypothetical protein [Yersinia enterocolitica subsp.
           enterocolitica 8081]
          Length = 429

 Score = 38.5 bits (89), Expect = 0.28,   Method: Composition-based stats.
 Identities = 21/138 (15%), Positives = 48/138 (34%), Gaps = 16/138 (11%)

Query: 20  RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79
           R  A +A+ Q+   G S + ++               ++      D    + +  G +  
Sbjct: 8   RSIAAKAISQVLDQGQSLSTVL-------------PGLQKSISDKDRALLQELCFGTLRV 54

Query: 80  KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139
              ++  I   +    +  +   +   ++  G+ +LI    +P    ++E V  A     
Sbjct: 55  LPQLEWCIQQLMARPMTGKQ--RVFHYLIMVGLYQLIYTR-IPPHAALAETVEGATALKR 111

Query: 140 GDEPKFINAVLDKVSRKE 157
                 IN VL +  R++
Sbjct: 112 PQLKGLINGVLRQFQRQQ 129


>gi|76797821|ref|ZP_00780086.1| sun protein [Streptococcus agalactiae 18RS21]
 gi|76586835|gb|EAO63328.1| sun protein [Streptococcus agalactiae 18RS21]
          Length = 426

 Score = 38.5 bits (89), Expect = 0.28,   Method: Composition-based stats.
 Identities = 23/113 (20%), Positives = 41/113 (36%), Gaps = 30/113 (26%)

Query: 58  ESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLEL-- 115
           +S     D      I++G + RK  ++  +S  +           +    L     EL  
Sbjct: 23  KSRLSDKDRALVTEIVYGTVARKITLEWYLSHFI-----------VDRDKL-----ELWV 66

Query: 116 -----------IECHSVPVEVIISEYVCIAHDFFYGDEP-KFINAVLDKVSRK 156
                      +   ++P   I+++ V IA +        K INAVL +VS +
Sbjct: 67  YHLLLLSLYQLLYLDNIPDHAIVNDAVTIAKNRGNKKGAEKLINAVLRRVSSE 119


>gi|302186426|ref|ZP_07263099.1| Fmu, rRNA SAM-dependent methyltransferase [Pseudomonas syringae pv.
           syringae 642]
          Length = 441

 Score = 38.5 bits (89), Expect = 0.29,   Method: Composition-based stats.
 Identities = 20/95 (21%), Positives = 33/95 (34%), Gaps = 3/95 (3%)

Query: 65  DLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVE 124
           D    + +  G    +  +  L +  L +   F   D  + ++L  G+ +L     +P  
Sbjct: 36  DRGLTQDLAFGTARWQPRLSALAAKLLQK--PFKAADADVEALLLVGLYQLFYSR-IPAH 92

Query: 125 VIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEI 159
             I E V  A           +NAVL    R  E 
Sbjct: 93  AAIGETVGCADKLKKPWAKGLLNAVLRNAQRDGEA 127


>gi|71898895|ref|ZP_00681062.1| Fmu, rRNA SAM-dependent methyltransferase [Xylella fastidiosa
           Ann-1]
 gi|71731307|gb|EAO33371.1| Fmu, rRNA SAM-dependent methyltransferase [Xylella fastidiosa
           Ann-1]
          Length = 429

 Score = 38.5 bits (89), Expect = 0.29,   Method: Composition-based stats.
 Identities = 21/92 (22%), Positives = 34/92 (36%), Gaps = 3/92 (3%)

Query: 65  DLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVE 124
           D      I   V+ R+   +  ++  L       R D  L  +L  G  +L +   VP  
Sbjct: 41  DRALVEAICFAVLRRRPVYEAALTRWLAR--PLGRGDAQLRGLLMVGFAQL-DVLKVPPY 97

Query: 125 VIISEYVCIAHDFFYGDEPKFINAVLDKVSRK 156
             +S  V       +     F+NAVL +  R+
Sbjct: 98  AALSATVDACRVLGWPHRASFVNAVLRRAQRE 129


>gi|313680062|ref|YP_004057801.1| nusb/rsmb/tim44 [Oceanithermus profundus DSM 14977]
 gi|313152777|gb|ADR36628.1| NusB/RsmB/TIM44 [Oceanithermus profundus DSM 14977]
          Length = 410

 Score = 38.5 bits (89), Expect = 0.29,   Method: Composition-based stats.
 Identities = 25/104 (24%), Positives = 43/104 (41%), Gaps = 17/104 (16%)

Query: 53  TELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGV 112
           TELD ++  L  D      +++G + R + ID  +   L       RL   +   LRAG 
Sbjct: 35  TELDPQAAGLATD------LVYGTLRRLRWIDWSLEPLLEH---PGRLPEAVRWALRAGG 85

Query: 113 LELIECHSVPVEVIISEYVCIAHDFFYGDEPK---FINAVLDKV 153
            E +     P    ++ +V +         P+    +NAVL ++
Sbjct: 86  YEKLFTPR-PAHASVNAWVEVV----GRRHPRLRGLVNAVLRRL 124


>gi|261250606|ref|ZP_05943181.1| ribosomal RNA small subunit methyltransferase B [Vibrio orientalis
           CIP 102891]
 gi|260939175|gb|EEX95162.1| ribosomal RNA small subunit methyltransferase B [Vibrio orientalis
           CIP 102891]
          Length = 426

 Score = 38.5 bits (89), Expect = 0.30,   Method: Composition-based stats.
 Identities = 25/139 (17%), Positives = 45/139 (32%), Gaps = 16/139 (11%)

Query: 20  RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79
           R AA   L+Q+   G S +  +                +      D    + I +G +  
Sbjct: 4   RAAAANVLFQVVDKGQSLSHAL-------------PAAQKTIRPRDHALLQEICYGALRY 50

Query: 80  KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139
              +   I++ L E         +   ++  G+ +L     +P    ++E V        
Sbjct: 51  LPRL-ESIANELMEN-PLKGKKRVFHHLILVGIYQLSFMR-IPAHAAVAETVEGTKTLKG 107

Query: 140 GDEPKFINAVLDKVSRKEE 158
                 INAVL    R +E
Sbjct: 108 PSLRGLINAVLRSYLRDQE 126


>gi|330965124|gb|EGH65384.1| 16S rRNA methyltransferase B [Pseudomonas syringae pv. actinidiae
           str. M302091]
          Length = 448

 Score = 38.5 bits (89), Expect = 0.30,   Method: Composition-based stats.
 Identities = 20/95 (21%), Positives = 33/95 (34%), Gaps = 3/95 (3%)

Query: 65  DLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVE 124
           D    + +  G    +  +  L +  L +   F   D  + ++L  G+ +L     +P  
Sbjct: 36  DRGLTQDLAFGTARWQPRLSALAAKLLQK--PFKAADADVEALLLVGLYQLFYSR-IPAH 92

Query: 125 VIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEI 159
             I E V  A           +NAVL    R  E 
Sbjct: 93  AAIGETVGCADKLKKPWAKGLLNAVLRNAQRDGEA 127


>gi|298484625|ref|ZP_07002729.1| Ribosomal RNA small subunit methyltransferase B [Pseudomonas
           savastanoi pv. savastanoi NCPPB 3335]
 gi|298160849|gb|EFI01866.1| Ribosomal RNA small subunit methyltransferase B [Pseudomonas
           savastanoi pv. savastanoi NCPPB 3335]
          Length = 441

 Score = 38.5 bits (89), Expect = 0.30,   Method: Composition-based stats.
 Identities = 19/95 (20%), Positives = 33/95 (34%), Gaps = 3/95 (3%)

Query: 65  DLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVE 124
           D    + +  G    +  +  + +  L +   F   D  + ++L  G+ +L     +P  
Sbjct: 36  DRGLTQDLAFGTARWQPRLSAMAAKLLQK--PFKAADADVEALLLVGLYQLFYSR-IPAH 92

Query: 125 VIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEI 159
             I E V  A           +NAVL    R  E 
Sbjct: 93  AAIGETVGCAEKLKKPWAKGLLNAVLRNAQRDGEA 127


>gi|257485586|ref|ZP_05639627.1| sun protein [Pseudomonas syringae pv. tabaci ATCC 11528]
 gi|330985725|gb|EGH83828.1| 16S rRNA methyltransferase B [Pseudomonas syringae pv. lachrymans
           str. M301315]
 gi|331011875|gb|EGH91931.1| 16S rRNA methyltransferase B [Pseudomonas syringae pv. tabaci ATCC
           11528]
          Length = 448

 Score = 38.5 bits (89), Expect = 0.30,   Method: Composition-based stats.
 Identities = 20/95 (21%), Positives = 33/95 (34%), Gaps = 3/95 (3%)

Query: 65  DLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVE 124
           D    + +  G    +  +  L +  L +   F   D  + ++L  G+ +L     +P  
Sbjct: 36  DRGLTQDLAFGTARWQPRLSALAAKLLQK--PFKAADADVEALLLVGLYQLFYSR-IPAH 92

Query: 125 VIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEI 159
             I E V  A           +NAVL    R  E 
Sbjct: 93  AAIGETVGCADKLKKPWAKGLLNAVLRNAQRDGEA 127


>gi|331017689|gb|EGH97745.1| 16S rRNA methyltransferase B [Pseudomonas syringae pv. lachrymans
           str. M302278PT]
          Length = 448

 Score = 38.5 bits (89), Expect = 0.30,   Method: Composition-based stats.
 Identities = 20/95 (21%), Positives = 33/95 (34%), Gaps = 3/95 (3%)

Query: 65  DLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVE 124
           D    + +  G    +  +  L +  L +   F   D  + ++L  G+ +L     +P  
Sbjct: 36  DRGLTQDLAFGTARWQPRLSALAAKLLQK--PFKAADADVEALLLVGLYQLFYSR-IPAH 92

Query: 125 VIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEI 159
             I E V  A           +NAVL    R  E 
Sbjct: 93  AAIGETVGCADKLKKPWAKGLLNAVLRNAQRDGEA 127


>gi|125579342|gb|EAZ20488.1| hypothetical protein OsJ_36095 [Oryza sativa Japonica Group]
          Length = 2432

 Score = 38.5 bits (89), Expect = 0.30,   Method: Composition-based stats.
 Identities = 18/80 (22%), Positives = 35/80 (43%), Gaps = 3/80 (3%)

Query: 25  QALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHID 84
           Q L Q+  +     +++ E + +R   + +   E+V    D E  R ++ G+    +H  
Sbjct: 66  QLLSQLRDLAYDADDVLDELDYFRIQDELDGTYEAVD---DAEEERGLVRGLALHARHTA 122

Query: 85  LLISSCLTEKWSFSRLDMIL 104
             I+  LT KW+   L  + 
Sbjct: 123 RAIARKLTCKWNADALVPVD 142


>gi|66043288|ref|YP_233129.1| Fmu, rRNA SAM-dependent methyltransferase [Pseudomonas syringae pv.
           syringae B728a]
 gi|63253995|gb|AAY35091.1| Fmu, rRNA SAM-dependent methyltransferase [Pseudomonas syringae pv.
           syringae B728a]
          Length = 448

 Score = 38.5 bits (89), Expect = 0.31,   Method: Composition-based stats.
 Identities = 20/95 (21%), Positives = 33/95 (34%), Gaps = 3/95 (3%)

Query: 65  DLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVE 124
           D    + +  G    +  +  L +  L +   F   D  + ++L  G+ +L     +P  
Sbjct: 36  DRGLTQDLAFGTARWQPRLSALAAKLLQK--PFKAADADVEALLLVGLYQLFYSR-IPAH 92

Query: 125 VIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEI 159
             I E V  A           +NAVL    R  E 
Sbjct: 93  AAIGETVGCADKLKKPWAKGLLNAVLRNAQRDGEA 127


>gi|302130426|ref|ZP_07256416.1| sun protein [Pseudomonas syringae pv. tomato NCPPB 1108]
          Length = 448

 Score = 38.5 bits (89), Expect = 0.31,   Method: Composition-based stats.
 Identities = 20/95 (21%), Positives = 33/95 (34%), Gaps = 3/95 (3%)

Query: 65  DLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVE 124
           D    + +  G    +  +  L +  L +   F   D  + ++L  G+ +L     +P  
Sbjct: 36  DRGLTQDLAFGTARWQPRLSALAAKLLQK--PFKAADADVEALLLVGLYQLFYSR-IPAH 92

Query: 125 VIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEI 159
             I E V  A           +NAVL    R  E 
Sbjct: 93  AAIGETVGCADKLKKPWAKGLLNAVLRNAQRDGEA 127


>gi|253690152|ref|YP_003019342.1| sun protein [Pectobacterium carotovorum subsp. carotovorum PC1]
 gi|259495486|sp|C6DFR7|RSMB_PECCP RecName: Full=Ribosomal RNA small subunit methyltransferase B;
           AltName: Full=16S rRNA m5C967 methyltransferase;
           AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
           rsmB
 gi|251756730|gb|ACT14806.1| sun protein [Pectobacterium carotovorum subsp. carotovorum PC1]
          Length = 429

 Score = 38.5 bits (89), Expect = 0.31,   Method: Composition-based stats.
 Identities = 17/97 (17%), Positives = 35/97 (36%), Gaps = 3/97 (3%)

Query: 62  LHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSV 121
              D    + +  GV+     ++  I   + +    +     L  ++  G+ +L     +
Sbjct: 37  SEKDRALLQELCFGVLRVLPQLEWCIQQLMAK--PLTGKQRTLHYLIMVGIYQLHYTR-I 93

Query: 122 PVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEE 158
           P    ++E V  A           IN VL +  R++E
Sbjct: 94  PPHAALAETVEGAVALKRPQLKGLINGVLRQFQRQQE 130


>gi|213968427|ref|ZP_03396570.1| sun protein [Pseudomonas syringae pv. tomato T1]
 gi|301384285|ref|ZP_07232703.1| sun protein [Pseudomonas syringae pv. tomato Max13]
 gi|302060153|ref|ZP_07251694.1| sun protein [Pseudomonas syringae pv. tomato K40]
 gi|213926715|gb|EEB60267.1| sun protein [Pseudomonas syringae pv. tomato T1]
          Length = 448

 Score = 38.5 bits (89), Expect = 0.31,   Method: Composition-based stats.
 Identities = 20/95 (21%), Positives = 33/95 (34%), Gaps = 3/95 (3%)

Query: 65  DLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVE 124
           D    + +  G    +  +  L +  L +   F   D  + ++L  G+ +L     +P  
Sbjct: 36  DRGLTQDLAFGTARWQPRLSALAAKLLQK--PFKAADADVEALLLVGLYQLFYSR-IPAH 92

Query: 125 VIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEI 159
             I E V  A           +NAVL    R  E 
Sbjct: 93  AAIGETVGCADKLKKPWAKGLLNAVLRNAQRDGEA 127


>gi|28867419|ref|NP_790038.1| sun protein [Pseudomonas syringae pv. tomato str. DC3000]
 gi|46396868|sp|Q88B41|RSMB_PSESM RecName: Full=Ribosomal RNA small subunit methyltransferase B;
           AltName: Full=16S rRNA m5C967 methyltransferase;
           AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
           rsmB
 gi|28850653|gb|AAO53733.1| sun protein [Pseudomonas syringae pv. tomato str. DC3000]
          Length = 448

 Score = 38.5 bits (89), Expect = 0.31,   Method: Composition-based stats.
 Identities = 20/95 (21%), Positives = 33/95 (34%), Gaps = 3/95 (3%)

Query: 65  DLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVE 124
           D    + +  G    +  +  L +  L +   F   D  + ++L  G+ +L     +P  
Sbjct: 36  DRGLTQDLAFGTARWQPRLSALAAKLLQK--PFKAADADVEALLLVGLYQLFYSR-IPAH 92

Query: 125 VIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEI 159
             I E V  A           +NAVL    R  E 
Sbjct: 93  AAIGETVGCADKLKKPWAKGLLNAVLRNAQRDGEA 127


>gi|330976420|gb|EGH76476.1| 16S rRNA methyltransferase B [Pseudomonas syringae pv. aptata str.
           DSM 50252]
          Length = 416

 Score = 38.5 bits (89), Expect = 0.31,   Method: Composition-based stats.
 Identities = 20/95 (21%), Positives = 33/95 (34%), Gaps = 3/95 (3%)

Query: 65  DLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVE 124
           D    + +  G    +  +  L +  L +   F   D  + ++L  G+ +L     +P  
Sbjct: 36  DRGLTQDLAFGTARWQPRLSALAAKLLQK--PFKAADADVEALLLVGLYQLFYSR-IPAH 92

Query: 125 VIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEI 159
             I E V  A           +NAVL    R  E 
Sbjct: 93  AAIGETVGCADKLKKPWAKGLLNAVLRNAQRDGEA 127


>gi|84500523|ref|ZP_00998772.1| ribosomal RNA small subunit methyltransferase B, putative
           [Oceanicola batsensis HTCC2597]
 gi|84391476|gb|EAQ03808.1| ribosomal RNA small subunit methyltransferase B, putative
           [Oceanicola batsensis HTCC2597]
          Length = 465

 Score = 38.5 bits (89), Expect = 0.31,   Method: Composition-based stats.
 Identities = 17/97 (17%), Positives = 31/97 (31%), Gaps = 8/97 (8%)

Query: 59  SVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIEC 118
             +   D    + +    +     +D L++  L+          +    LR    EL   
Sbjct: 75  GRFDPADRARAQRLATETLRHLGRLDTLLAEHLSHMPPL----PV-LITLRIATYEL-AT 128

Query: 119 HSVPVEVIISEYVC-IAHDFFYGDEPKFINAVLDKVS 154
                 V+ +  V  +A    +       NAVL KV+
Sbjct: 129 SEAAHGVV-NSAVTHVAAMPRHNRLKGMTNAVLRKVA 164


>gi|50122921|ref|YP_052088.1| 16S rRNA methyltransferase B [Pectobacterium atrosepticum SCRI1043]
 gi|81643776|sp|Q6D000|RSMB_ERWCT RecName: Full=Ribosomal RNA small subunit methyltransferase B;
           AltName: Full=16S rRNA m5C967 methyltransferase;
           AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
           rsmB
 gi|49613447|emb|CAG76898.1| Sun protein [Pectobacterium atrosepticum SCRI1043]
          Length = 429

 Score = 38.5 bits (89), Expect = 0.31,   Method: Composition-based stats.
 Identities = 17/97 (17%), Positives = 35/97 (36%), Gaps = 3/97 (3%)

Query: 62  LHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSV 121
              D    + +  GV+     ++  I   + +    +     L  ++  G+ +L     +
Sbjct: 37  SDKDRALLQELCFGVLRVLPQLEWCIQQLMAK--PLTGKQRTLHYLIMVGIYQLHYTR-I 93

Query: 122 PVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEE 158
           P    ++E V  A           IN VL +  R++E
Sbjct: 94  PPHAALAETVEGAVALKRPQLKGLINGVLRQFQRQQE 130


>gi|292489815|ref|YP_003532705.1| ribosomal RNA small subunit methyltransferase B [Erwinia amylovora
           CFBP1430]
 gi|291555252|emb|CBA23523.1| Ribosomal RNA small subunit methyltransferase B [Erwinia amylovora
           CFBP1430]
          Length = 456

 Score = 38.5 bits (89), Expect = 0.32,   Method: Composition-based stats.
 Identities = 17/122 (13%), Positives = 45/122 (36%), Gaps = 12/122 (9%)

Query: 32  IIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCL 91
           I   +  +++ + ++    ++     +      D    + + +GV+     ++ +IS  +
Sbjct: 37  IAARTIEQVVEQGQS---LSNVLPAAQKCVDDKDAALVQELCYGVLRTLPQLEWVISKLM 93

Query: 92  TEKWSFSRLDMILCSI---LRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINA 148
           +       +     +I   +  G+ +L+    +P    ++E V  A           IN 
Sbjct: 94  SRP-----MTGKQRAIHFLIMVGLYQLMFTR-IPPHAALAETVEGAVALKRPQLKGLING 147

Query: 149 VL 150
           VL
Sbjct: 148 VL 149


>gi|254429168|ref|ZP_05042875.1| ribosomal RNA small subunit methyltransferase B [Alcanivorax sp.
           DG881]
 gi|196195337|gb|EDX90296.1| ribosomal RNA small subunit methyltransferase B [Alcanivorax sp.
           DG881]
          Length = 427

 Score = 38.5 bits (89), Expect = 0.32,   Method: Composition-based stats.
 Identities = 21/102 (20%), Positives = 36/102 (35%), Gaps = 3/102 (2%)

Query: 54  ELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVL 113
           E+  +      D    R I  GV    + ++  ++  L++          +   L AG+ 
Sbjct: 19  EVLRDFPLQGSDGGQMRDICFGVCRHLRPLNHWLNQQLSK--PLKASAQPVRLALLAGLY 76

Query: 114 ELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSR 155
           EL      P   I++ Y  +             NAVL K S+
Sbjct: 77  EL-WFSDRPAHAIVNAYPQLCRKLKAPWAAGLSNAVLRKASQ 117


>gi|291619144|ref|YP_003521886.1| RsmB [Pantoea ananatis LMG 20103]
 gi|291154174|gb|ADD78758.1| RsmB [Pantoea ananatis LMG 20103]
          Length = 433

 Score = 38.5 bits (89), Expect = 0.32,   Method: Composition-based stats.
 Identities = 20/103 (19%), Positives = 38/103 (36%), Gaps = 3/103 (2%)

Query: 57  VESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELI 116
            +      D    + I  GV+     ++ LI   +      +     L  ++  G+ +L+
Sbjct: 32  AQKKLSDKDAALVQEICFGVLRTLPQLEALIGKLMER--PLTGKQRTLHFLIMVGLYQLL 89

Query: 117 ECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEI 159
               VP    ++E V  A      +    IN VL +  R++E 
Sbjct: 90  YTR-VPAHAALAETVAGAEVLKRANLKGLINGVLRQFQRQQEA 131


>gi|238783195|ref|ZP_04627221.1| Ribosomal RNA small subunit methyltransferase B [Yersinia
           bercovieri ATCC 43970]
 gi|238715991|gb|EEQ07977.1| Ribosomal RNA small subunit methyltransferase B [Yersinia
           bercovieri ATCC 43970]
          Length = 431

 Score = 38.5 bits (89), Expect = 0.32,   Method: Composition-based stats.
 Identities = 21/138 (15%), Positives = 48/138 (34%), Gaps = 16/138 (11%)

Query: 20  RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79
           R  A +A+ Q+   G S + ++               + +     D    + +  G +  
Sbjct: 8   RSIAAKAISQVLDQGQSLSTVL-------------PGLHNTISDKDRALLQELCFGTLRV 54

Query: 80  KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139
              ++  I   +    +  +   +   ++  G+ +LI    +P    ++E V  A     
Sbjct: 55  LPQLEWCIQQLMARPMTGKQ--RVFHYLIMVGLYQLIYTR-IPPHAALAETVEGATALKR 111

Query: 140 GDEPKFINAVLDKVSRKE 157
                 IN VL +  R++
Sbjct: 112 PQLKGLINGVLRQFQRQQ 129


>gi|238921411|ref|YP_002934926.1| 16S rRNA methyltransferase B [Edwardsiella ictaluri 93-146]
 gi|238870980|gb|ACR70691.1| ribosomal RNA small subunit methyltransferase B, putative
           [Edwardsiella ictaluri 93-146]
          Length = 430

 Score = 38.5 bits (89), Expect = 0.33,   Method: Composition-based stats.
 Identities = 16/105 (15%), Positives = 37/105 (35%), Gaps = 3/105 (2%)

Query: 55  LDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLE 114
                     D    + +  G +     ++ ++   + +  +  +    L  +L  G+ +
Sbjct: 31  PSAAQSLSEKDRALLQELCFGTLRVLPQLEWILQQLMAKVLTGKQ--RTLHYLLMVGLYQ 88

Query: 115 LIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEI 159
           L+    +P    ++E V  A           IN VL +  R++E 
Sbjct: 89  LVYTR-IPPHAALAETVDGATALKRPQLKGLINGVLRQFQRQQEA 132


>gi|15837530|ref|NP_298218.1| hypothetical protein XF0928 [Xylella fastidiosa 9a5c]
 gi|46397049|sp|Q9PEV0|RSMB_XYLFA RecName: Full=Ribosomal RNA small subunit methyltransferase B;
           AltName: Full=16S rRNA m5C967 methyltransferase;
           AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
           rsmB
 gi|9105851|gb|AAF83738.1|AE003932_2 conserved hypothetical protein [Xylella fastidiosa 9a5c]
          Length = 421

 Score = 38.5 bits (89), Expect = 0.33,   Method: Composition-based stats.
 Identities = 21/92 (22%), Positives = 34/92 (36%), Gaps = 3/92 (3%)

Query: 65  DLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVE 124
           D      I   V+ R+   +  ++  L       R D  L  +L  G  +L +   VP  
Sbjct: 33  DRALVEAICFAVLRRRPVYEAALTQWLAR--PLGRGDAQLRGLLMVGFAQL-DVLKVPPY 89

Query: 125 VIISEYVCIAHDFFYGDEPKFINAVLDKVSRK 156
             +S  V       +     F+NAVL +  R+
Sbjct: 90  AALSATVDACRVLGWPHRASFVNAVLRRAQRE 121


>gi|126668178|ref|ZP_01739139.1| Fmu, rRNA SAM-dependent methyltransferase [Marinobacter sp. ELB17]
 gi|126627327|gb|EAZ97963.1| Fmu, rRNA SAM-dependent methyltransferase [Marinobacter sp. ELB17]
          Length = 432

 Score = 38.5 bits (89), Expect = 0.34,   Method: Composition-based stats.
 Identities = 11/88 (12%), Positives = 28/88 (31%), Gaps = 3/88 (3%)

Query: 69  FRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIIS 128
            + + +G       +D  +   + +       D ++  ++   + +L         V ++
Sbjct: 43  LQALCYGTCRWFHRLDDELQGRMKK--PLKNHDRVVHHLMLVALFQLRFSQQATYAV-LN 99

Query: 129 EYVCIAHDFFYGDEPKFINAVLDKVSRK 156
           E V              +N VL    R+
Sbjct: 100 ETVEACRAMDKPHLTGLVNGVLRSAERE 127


>gi|330876378|gb|EGH10527.1| 16S rRNA methyltransferase B [Pseudomonas syringae pv. morsprunorum
           str. M302280PT]
          Length = 448

 Score = 38.5 bits (89), Expect = 0.34,   Method: Composition-based stats.
 Identities = 20/95 (21%), Positives = 33/95 (34%), Gaps = 3/95 (3%)

Query: 65  DLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVE 124
           D    + +  G    +  +  L +  L +   F   D  + ++L  G+ +L     +P  
Sbjct: 36  DRGLTQDLAFGTARWQPRLSALAAKLLQK--PFKAADADVEALLLVGLYQLFYSR-IPAH 92

Query: 125 VIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEI 159
             I E V  A           +NAVL    R  E 
Sbjct: 93  AAIGETVGCADKLKKPWAKGLLNAVLRNAQRDGEA 127


>gi|327395473|dbj|BAK12895.1| ribosomal RNA small subunit methyltransferase B RsmB [Pantoea
           ananatis AJ13355]
          Length = 433

 Score = 38.5 bits (89), Expect = 0.34,   Method: Composition-based stats.
 Identities = 20/103 (19%), Positives = 38/103 (36%), Gaps = 3/103 (2%)

Query: 57  VESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELI 116
            +      D    + I  GV+     ++ LI   +      +     L  ++  G+ +L+
Sbjct: 32  AQKKLSDKDAALVQEICFGVLRTLPQLEALIGKLMER--PLTGKQRTLHFLIMVGLYQLL 89

Query: 117 ECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEI 159
               VP    ++E V  A      +    IN VL +  R++E 
Sbjct: 90  YTR-VPAHAALAETVAGAEVLKRANLKGLINGVLRQFQRQQEA 131


>gi|85711007|ref|ZP_01042068.1| tRNA and rRNA methylase [Idiomarina baltica OS145]
 gi|85695411|gb|EAQ33348.1| tRNA and rRNA methylase [Idiomarina baltica OS145]
          Length = 437

 Score = 38.5 bits (89), Expect = 0.35,   Method: Composition-based stats.
 Identities = 27/144 (18%), Positives = 49/144 (34%), Gaps = 16/144 (11%)

Query: 19  ARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMD 78
           +R  A QA++ +   G S T+ ++ Y                    D    + I +GVM 
Sbjct: 11  SRAVAAQAIHAVLEQGQSLTQALTTY-------------SEQLSAEDKRLAQAISYGVMR 57

Query: 79  RKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFF 138
               +   +S  L +       + I+ S+L  G  +L           +S  V  +    
Sbjct: 58  YLPVLTEKVSGKLDK--PLKGKNQIIQSLLLVGTYQL-FKLRTKDHAAVSATVEASKLLK 114

Query: 139 YGDEPKFINAVLDKVSRKEEIKRS 162
                  +N VL +V R+   +  
Sbjct: 115 RKALSGLVNGVLRQVLREAPTRND 138


>gi|292900857|ref|YP_003540226.1| ribosomal RNA small subunit methyltransferase B [Erwinia amylovora
           ATCC 49946]
 gi|291200705|emb|CBJ47838.1| ribosomal RNA small subunit methyltransferase B [Erwinia amylovora
           ATCC 49946]
          Length = 429

 Score = 38.2 bits (88), Expect = 0.37,   Method: Composition-based stats.
 Identities = 17/122 (13%), Positives = 45/122 (36%), Gaps = 12/122 (9%)

Query: 32  IIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCL 91
           I   +  +++ + ++    ++     +      D    + + +GV+     ++ +IS  +
Sbjct: 10  IAARTIEQVVEQGQS---LSNVLPAAQKCVDDKDAALVQELCYGVLRTLPQLEWVISKLM 66

Query: 92  TEKWSFSRLDMILCSI---LRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINA 148
           +       +     +I   +  G+ +L+    +P    ++E V  A           IN 
Sbjct: 67  SRP-----MTGKQRAIHFLIMVGLYQLMFTR-IPPHAALAETVEGAVALKRPQLKGLING 120

Query: 149 VL 150
           VL
Sbjct: 121 VL 122


>gi|330957387|gb|EGH57647.1| 16S rRNA methyltransferase B [Pseudomonas syringae pv. maculicola
           str. ES4326]
          Length = 441

 Score = 38.2 bits (88), Expect = 0.37,   Method: Composition-based stats.
 Identities = 20/95 (21%), Positives = 33/95 (34%), Gaps = 3/95 (3%)

Query: 65  DLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVE 124
           D    + +  G    +  +  L +  L +   F   D  + ++L  G+ +L     +P  
Sbjct: 36  DRGLTQDLAFGTARWQPRLSALAAKLLQK--PFKAADADVEALLLVGLYQLFYSR-IPAH 92

Query: 125 VIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEI 159
             I E V  A           +NAVL    R  E 
Sbjct: 93  AAIGETVGCADKLKKPWAKGLLNAVLRNAQRDGEA 127


>gi|261823202|ref|YP_003261308.1| 16S rRNA methyltransferase B [Pectobacterium wasabiae WPP163]
 gi|261607215|gb|ACX89701.1| sun protein [Pectobacterium wasabiae WPP163]
          Length = 429

 Score = 38.2 bits (88), Expect = 0.37,   Method: Composition-based stats.
 Identities = 17/97 (17%), Positives = 35/97 (36%), Gaps = 3/97 (3%)

Query: 62  LHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSV 121
              D    + +  GV+     ++  I   + +    +     L  ++  G+ +L     +
Sbjct: 37  SDKDRALLQELCFGVLRVLPQLEWCIQQLMAK--PLTGKQRTLHYLIMVGIYQLHYTR-I 93

Query: 122 PVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEE 158
           P    ++E V  A           IN VL +  R++E
Sbjct: 94  PPHAALAETVEGAVALKRPQLKGLINGVLRQFQRQQE 130


>gi|195382294|ref|XP_002049865.1| GJ21825 [Drosophila virilis]
 gi|194144662|gb|EDW61058.1| GJ21825 [Drosophila virilis]
          Length = 915

 Score = 38.2 bits (88), Expect = 0.37,   Method: Composition-based stats.
 Identities = 15/82 (18%), Positives = 34/82 (41%), Gaps = 4/82 (4%)

Query: 5   DNKKDLKLSHRRGIARLAA--VQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYL 62
               D K + +R +    A  +QA++QI + G     ++ E         ++++      
Sbjct: 363 PKHPDYKYNAKRSVYSELAAPLQAVFQIPLTGAEIFAVLKELRGRYRRELSKVNSLGGKY 422

Query: 63  HVDLEWFRVI--IHGVMDRKQH 82
              L +F  +  + GV++ K+ 
Sbjct: 423 KSRLWYFEKMHFLRGVIEHKRA 444


>gi|254507306|ref|ZP_05119442.1| ribosomal RNA small subunit methyltransferase B [Vibrio
           parahaemolyticus 16]
 gi|219549766|gb|EED26755.1| ribosomal RNA small subunit methyltransferase B [Vibrio
           parahaemolyticus 16]
          Length = 426

 Score = 38.2 bits (88), Expect = 0.38,   Method: Composition-based stats.
 Identities = 24/140 (17%), Positives = 45/140 (32%), Gaps = 16/140 (11%)

Query: 20  RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79
           R AA   L+Q+   G S +  +                +      D    + I +G +  
Sbjct: 4   RAAAANVLFQVVDKGQSLSHAL-------------PAAQKTIRPRDHALLQEICYGALRY 50

Query: 80  KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139
              +   I++ L +         +   ++  G+ +L     +P    ++E V        
Sbjct: 51  LPRL-ESIANELMDN-PLKGKKRVFHHLILVGIYQLSFMR-IPAHAAVAETVEGTKTLKG 107

Query: 140 GDEPKFINAVLDKVSRKEEI 159
                 INAVL    R +E 
Sbjct: 108 PSLRGLINAVLRSYLRDQEA 127


>gi|329117416|ref|ZP_08246133.1| ribosomal RNA small subunit methyltransferase B [Streptococcus
           parauberis NCFD 2020]
 gi|326907821|gb|EGE54735.1| ribosomal RNA small subunit methyltransferase B [Streptococcus
           parauberis NCFD 2020]
          Length = 440

 Score = 38.2 bits (88), Expect = 0.40,   Method: Composition-based stats.
 Identities = 26/136 (19%), Positives = 55/136 (40%), Gaps = 15/136 (11%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           + +AR  A+  L           E I E + Y   A             D      I++G
Sbjct: 6   KKLARGKALIVL-----------EDIFENDAYSNLALNNQLTNIALSSKDKGLITEIVYG 54

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
            + RK  ++  ++  + ++    +++  +  +L   + +L+    VP   I+++ V IA 
Sbjct: 55  TLSRKMTLEWYLAHFIEDR---DKIEKWVYYLLLLSLYQLLYLDKVPAHAIVNDAVNIAK 111

Query: 136 DFFYGDEP-KFINAVL 150
           +        K++NA+L
Sbjct: 112 NRGNKRGAEKYVNAIL 127


>gi|289627007|ref|ZP_06459961.1| sun protein [Pseudomonas syringae pv. aesculi str. NCPPB3681]
 gi|289647928|ref|ZP_06479271.1| sun protein [Pseudomonas syringae pv. aesculi str. 2250]
 gi|330867899|gb|EGH02608.1| 16S rRNA methyltransferase B [Pseudomonas syringae pv. aesculi str.
           0893_23]
          Length = 441

 Score = 38.2 bits (88), Expect = 0.40,   Method: Composition-based stats.
 Identities = 20/95 (21%), Positives = 33/95 (34%), Gaps = 3/95 (3%)

Query: 65  DLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVE 124
           D    + +  G    +  +  L +  L +   F   D  + ++L  G+ +L     +P  
Sbjct: 36  DRGLTQDLAFGTARWQPRLSALAAKLLQK--PFKAADADVEALLLVGLYQLFYSR-IPAH 92

Query: 125 VIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEI 159
             I E V  A           +NAVL    R  E 
Sbjct: 93  AAIGETVGCADKLKKPWAKGLLNAVLRNAQRDGEA 127


>gi|290477163|ref|YP_003470078.1| 16S rRNA m5C967 methyltransferase,
           S-adenosyl-L-methionine-dependent [Xenorhabdus bovienii
           SS-2004]
 gi|289176511|emb|CBJ83320.1| 16S rRNA m5C967 methyltransferase,
           S-adenosyl-L-methionine-dependent [Xenorhabdus bovienii
           SS-2004]
          Length = 428

 Score = 38.2 bits (88), Expect = 0.40,   Method: Composition-based stats.
 Identities = 24/139 (17%), Positives = 49/139 (35%), Gaps = 16/139 (11%)

Query: 20  RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79
           R  A +A++Q+   G S + +I E              +      D    + +  GV+  
Sbjct: 8   RNIAAKAIHQVLEQGQSLSTVIPEL-------------QQRVSDKDKALLQELCFGVIRV 54

Query: 80  KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139
              ++  I   + +         I   ++  G+ +L     +P    ++E V  A     
Sbjct: 55  LPQLEWFIGQLMAK--PLKGKQRIFHYLIMVGIYQLTYTR-IPAHAALAETVNGAISLKR 111

Query: 140 GDEPKFINAVLDKVSRKEE 158
                 IN VL +  R+++
Sbjct: 112 PQLKGLINGVLRQFQRQQQ 130


>gi|209542805|ref|YP_002275034.1| Fmu (Sun) domain-containing protein [Gluconacetobacter
           diazotrophicus PAl 5]
 gi|209530482|gb|ACI50419.1| Fmu (Sun) domain protein [Gluconacetobacter diazotrophicus PAl 5]
          Length = 438

 Score = 38.2 bits (88), Expect = 0.42,   Method: Composition-based stats.
 Identities = 13/80 (16%), Positives = 31/80 (38%), Gaps = 6/80 (7%)

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
           V+       +++   L ++        +  ++L  GV +++     P    +   V +A 
Sbjct: 70  VLRHMGTAGMVLEPFLKKEPPL----PV-RTVLLIGVAQILF-LDTPAHAAVGTAVSLAR 123

Query: 136 DFFYGDEPKFINAVLDKVSR 155
                     +NAVL +V++
Sbjct: 124 RRGLVPFAGLVNAVLRRVAQ 143


>gi|238788880|ref|ZP_04632670.1| Ribosomal RNA small subunit methyltransferase B [Yersinia
           frederiksenii ATCC 33641]
 gi|238722907|gb|EEQ14557.1| Ribosomal RNA small subunit methyltransferase B [Yersinia
           frederiksenii ATCC 33641]
          Length = 429

 Score = 38.2 bits (88), Expect = 0.42,   Method: Composition-based stats.
 Identities = 21/138 (15%), Positives = 47/138 (34%), Gaps = 16/138 (11%)

Query: 20  RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79
           R  A +A+ Q+   G S + ++               +       D    + +  G +  
Sbjct: 8   RSIAAKAISQVLDQGQSLSTVL-------------PGLHKSISDKDRALLQELCFGTLRV 54

Query: 80  KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139
              ++  I   +    +  +   +   ++  G+ +LI    +P    ++E V  A     
Sbjct: 55  LPQLEWCIQQLMARPMTGKQ--RVFHYLIMVGLYQLIYTR-IPPHAALAETVEGATALKR 111

Query: 140 GDEPKFINAVLDKVSRKE 157
                 IN VL +  R++
Sbjct: 112 PQLKGLINGVLRQFQRQQ 129


>gi|322373356|ref|ZP_08047892.1| ribosomal RNA small subunit methyltransferase B [Streptococcus sp.
           C150]
 gi|321278398|gb|EFX55467.1| ribosomal RNA small subunit methyltransferase B [Streptococcus sp.
           C150]
          Length = 443

 Score = 38.2 bits (88), Expect = 0.45,   Method: Composition-based stats.
 Identities = 26/152 (17%), Positives = 52/152 (34%), Gaps = 35/152 (23%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
           +  AR  A++ L           E+  E   Y   A      +S     D      +++G
Sbjct: 9   KKTARGQALEVL----------EEVFQE-GAYSNIALNARLSKSHLTDKDKALVTEMVYG 57

Query: 76  VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVL----------ELIECHSVPVEV 125
            + RK  ++ +++  + ++                             +L     +P   
Sbjct: 58  TVARKITLEWILAHVIEDRDKLE-------------AWVYDLLLLSLYQLAYLDKIPAHA 104

Query: 126 IISEYVCIAHDFFYGDEP-KFINAVLDKVSRK 156
           ++++ V IA +        K INAVL K+S +
Sbjct: 105 VVNDAVSIAKNRGNKKGAEKLINAVLRKLSSQ 136


>gi|315122151|ref|YP_004062640.1| Fmu (Sun) domain protein [Candidatus Liberibacter solanacearum
           CLso-ZC1]
 gi|313495553|gb|ADR52152.1| Fmu (Sun) domain protein [Candidatus Liberibacter solanacearum
           CLso-ZC1]
          Length = 443

 Score = 38.2 bits (88), Expect = 0.46,   Method: Composition-based stats.
 Identities = 23/114 (20%), Positives = 43/114 (37%), Gaps = 10/114 (8%)

Query: 62  LHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSV 121
            H D    R I+   +     ID ++   L    S       L  + R  + +++     
Sbjct: 42  SHKDQALVRAILSTTLRFLPRIDAVLDLLLVSSLSKK--KQSLRQLFRISIAQILYLDVA 99

Query: 122 PVEVIISEYVCIAHDFFYGDEPKF---INAVLDKVSRKEE--IKRSGCVSAITQ 170
              V+    V  A      +   F   +N++L +VSR++   ++R   +S I Q
Sbjct: 100 DYAVV-DLAVEQAKR--DQENRHFSNLVNSILRRVSREKTELLQRFSSISVIPQ 150


>gi|315231384|ref|YP_004071820.1| tRNA/RNA cytosine-C5-methylase [Thermococcus barophilus MP]
 gi|315184412|gb|ADT84597.1| tRNA/RNA cytosine-C5-methylase [Thermococcus barophilus MP]
          Length = 451

 Score = 37.8 bits (87), Expect = 0.48,   Method: Composition-based stats.
 Identities = 18/86 (20%), Positives = 40/86 (46%), Gaps = 2/86 (2%)

Query: 68  WFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVII 127
                +  +   ++ ID +++S L +      L++ L +++R GV E+     V   +  
Sbjct: 49  LAHAYVFEIEKWRKKIDFIVNSVL-KGSKIEDLELYLANLIRIGVFEMKF-KGVNPAIAT 106

Query: 128 SEYVCIAHDFFYGDEPKFINAVLDKV 153
              V +  + +   + KF+NA+L +V
Sbjct: 107 DSVVRVVKEKYDLAKAKFVNALLREV 132


>gi|238763703|ref|ZP_04624662.1| Ribosomal RNA small subunit methyltransferase B [Yersinia
           kristensenii ATCC 33638]
 gi|238698005|gb|EEP90763.1| Ribosomal RNA small subunit methyltransferase B [Yersinia
           kristensenii ATCC 33638]
          Length = 429

 Score = 37.8 bits (87), Expect = 0.49,   Method: Composition-based stats.
 Identities = 22/138 (15%), Positives = 47/138 (34%), Gaps = 16/138 (11%)

Query: 20  RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79
           R  A +A+ Q+   G S + ++               +       D    + +  G +  
Sbjct: 8   RSIAAKAISQVLDQGQSLSTVL-------------PRLHKNISDKDRALLQELCFGTLRV 54

Query: 80  KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139
              ++  I   +    +  +   I   ++  G+ +LI    +P    ++E V  A     
Sbjct: 55  LPQLEWCIKQLMARPMTGKQ--RIFHYLIMVGLYQLIYTR-IPPHAALAETVEGATALKR 111

Query: 140 GDEPKFINAVLDKVSRKE 157
                 IN VL +  R++
Sbjct: 112 PQLKGLINGVLRQFQRQQ 129


>gi|28199632|ref|NP_779946.1| hypothetical protein PD1761 [Xylella fastidiosa Temecula1]
 gi|182682377|ref|YP_001830537.1| sun protein [Xylella fastidiosa M23]
 gi|46396863|sp|Q87AR1|RSMB_XYLFT RecName: Full=Ribosomal RNA small subunit methyltransferase B;
           AltName: Full=16S rRNA m5C967 methyltransferase;
           AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
           rsmB
 gi|28057747|gb|AAO29595.1| conserved hypothetical protein [Xylella fastidiosa Temecula1]
 gi|182632487|gb|ACB93263.1| sun protein [Xylella fastidiosa M23]
 gi|307578659|gb|ADN62628.1| sun protein [Xylella fastidiosa subsp. fastidiosa GB514]
          Length = 431

 Score = 37.8 bits (87), Expect = 0.49,   Method: Composition-based stats.
 Identities = 21/92 (22%), Positives = 34/92 (36%), Gaps = 3/92 (3%)

Query: 65  DLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVE 124
           D      I   V+ R+   +  ++  L       R D  L  +L  G  +L +   VP  
Sbjct: 41  DRALVEAICFAVLRRRPVYEAALTRWLAR--PLGRGDAQLRGLLMVGFAQL-DVLKVPPY 97

Query: 125 VIISEYVCIAHDFFYGDEPKFINAVLDKVSRK 156
             +S  V       +     F+NAVL +  R+
Sbjct: 98  AALSATVDACRVLGWPHRVSFVNAVLRRAQRE 129


>gi|148978298|ref|ZP_01814803.1| Sun protein [Vibrionales bacterium SWAT-3]
 gi|145962457|gb|EDK27735.1| Sun protein [Vibrionales bacterium SWAT-3]
          Length = 426

 Score = 37.8 bits (87), Expect = 0.49,   Method: Composition-based stats.
 Identities = 25/139 (17%), Positives = 45/139 (32%), Gaps = 16/139 (11%)

Query: 20  RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79
           R AA   L+Q+   G S +  +                +      D    + I +G +  
Sbjct: 4   RAAAANVLFQVVDKGHSLSHAL-------------PAAQKTISPRDHALLQEICYGALRY 50

Query: 80  KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139
              +   I++ L E         +   ++  G+ +L     +P    ++E V        
Sbjct: 51  LPRL-ESIANELMEN-PLKGKKRVFHHLILVGIYQLSFMR-IPSHAAVAETVEGTKTLRG 107

Query: 140 GDEPKFINAVLDKVSRKEE 158
                 INAVL    R +E
Sbjct: 108 PSLSGLINAVLRSYLRDQE 126


>gi|86147131|ref|ZP_01065447.1| Sun protein [Vibrio sp. MED222]
 gi|218711000|ref|YP_002418621.1| ribosomal RNA small subunit methyltransferase B [Vibrio splendidus
           LGP32]
 gi|85835015|gb|EAQ53157.1| Sun protein [Vibrio sp. MED222]
 gi|218324019|emb|CAV20381.1| Ribosomal RNA small subunit methyltransferase B [Vibrio splendidus
           LGP32]
          Length = 426

 Score = 37.8 bits (87), Expect = 0.49,   Method: Composition-based stats.
 Identities = 26/139 (18%), Positives = 46/139 (33%), Gaps = 16/139 (11%)

Query: 20  RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79
           R AA   L+Q+   G S +  +                +      D    + I +G +  
Sbjct: 4   RAAAANVLFQVVDKGHSLSHAL-------------PAAQKTIRPRDHALLQEICYGALRY 50

Query: 80  KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139
              +   I++ L E  S      +   ++  G+ +L     +P    ++E V        
Sbjct: 51  LPRL-ESIANELMEN-SLKGKKRVFHHLILVGIYQLSFMR-IPSHAAVAETVEATKTLRG 107

Query: 140 GDEPKFINAVLDKVSRKEE 158
                 INAVL    R +E
Sbjct: 108 PSLSGLINAVLRSYLRDQE 126


>gi|84393439|ref|ZP_00992196.1| Sun protein [Vibrio splendidus 12B01]
 gi|84375955|gb|EAP92845.1| Sun protein [Vibrio splendidus 12B01]
          Length = 426

 Score = 37.8 bits (87), Expect = 0.49,   Method: Composition-based stats.
 Identities = 26/139 (18%), Positives = 46/139 (33%), Gaps = 16/139 (11%)

Query: 20  RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79
           R AA   L+Q+   G S +  +                +      D    + I +G +  
Sbjct: 4   RAAAANVLFQVVDKGHSLSHAL-------------PAAQKTIRPRDHALLQEICYGALRY 50

Query: 80  KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139
              +   I++ L E  S      +   ++  G+ +L     +P    ++E V        
Sbjct: 51  LPRL-ESIANELMEN-SLKGKKRVFHHLILVGIYQLSFMR-IPSHAAVAETVEATKTLRG 107

Query: 140 GDEPKFINAVLDKVSRKEE 158
                 INAVL    R +E
Sbjct: 108 PSLSGLINAVLRSYLRDQE 126


>gi|330970341|gb|EGH70407.1| 16S rRNA methyltransferase B [Pseudomonas syringae pv. aceris str.
           M302273PT]
          Length = 441

 Score = 37.8 bits (87), Expect = 0.50,   Method: Composition-based stats.
 Identities = 20/95 (21%), Positives = 33/95 (34%), Gaps = 3/95 (3%)

Query: 65  DLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVE 124
           D    + +  G    +  +  L +  L +   F   D  + ++L  G+ +L     +P  
Sbjct: 36  DRGLTQDLAFGTARWQPRLSALAAKLLQK--PFKAADADVDALLLVGLYQLFYSR-IPAH 92

Query: 125 VIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEI 159
             I E V  A           +NAVL    R  E 
Sbjct: 93  AAIGETVGCADKLKKPWAKGLLNAVLRNAQRDGEA 127


>gi|323496958|ref|ZP_08101986.1| 16S rRNA methyltransferase B [Vibrio sinaloensis DSM 21326]
 gi|323318032|gb|EGA71015.1| 16S rRNA methyltransferase B [Vibrio sinaloensis DSM 21326]
          Length = 426

 Score = 37.8 bits (87), Expect = 0.51,   Method: Composition-based stats.
 Identities = 24/140 (17%), Positives = 45/140 (32%), Gaps = 16/140 (11%)

Query: 20  RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79
           R AA   L+Q+   G S +  +                +      D    + I +G +  
Sbjct: 4   RAAAANVLFQVVDKGQSLSHAL-------------PAAQKTIRPRDHALLQEICYGALRY 50

Query: 80  KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139
              +   I++ L +         +   ++  G+ +L     +P    ++E V        
Sbjct: 51  LPRL-ESIANELMDN-PLKGKKRVFHHLILVGIYQLSFMR-IPAHAAVAETVEGTKTLRG 107

Query: 140 GDEPKFINAVLDKVSRKEEI 159
                 INAVL    R +E 
Sbjct: 108 PSLRGLINAVLRSYLRDQEA 127


>gi|146313354|ref|YP_001178428.1| 16S rRNA methyltransferase B [Enterobacter sp. 638]
 gi|224493252|sp|A4WF97|RSMB_ENT38 RecName: Full=Ribosomal RNA small subunit methyltransferase B;
           AltName: Full=16S rRNA m5C967 methyltransferase;
           AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
           rsmB
 gi|145320230|gb|ABP62377.1| 16S rRNA m(5)C-967 methyltransferase [Enterobacter sp. 638]
          Length = 428

 Score = 37.8 bits (87), Expect = 0.52,   Method: Composition-based stats.
 Identities = 21/130 (16%), Positives = 46/130 (35%), Gaps = 9/130 (6%)

Query: 32  IIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCL 91
           +   + + I    E  +  ++    ++      D    + +  GV+      + LIS  +
Sbjct: 6   LRSMAASAIEKVVEQGQSLSNILPPLQQKVSDKDKALLQELCFGVLRTLPQQEWLISKLM 65

Query: 92  TEKWSFSRLDMILCSI---LRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINA 148
           +       +     +I   +  G  +L+    +P    ++E V  A           IN 
Sbjct: 66  SRP-----MTGKQRTIHYLIMVGFYQLLHTR-IPPHAALAETVEGAVVIKRPQLKGLING 119

Query: 149 VLDKVSRKEE 158
           VL +  R++E
Sbjct: 120 VLRQFQRQQE 129


>gi|238792967|ref|ZP_04636597.1| Ribosomal RNA small subunit methyltransferase B [Yersinia
           intermedia ATCC 29909]
 gi|238727821|gb|EEQ19345.1| Ribosomal RNA small subunit methyltransferase B [Yersinia
           intermedia ATCC 29909]
          Length = 429

 Score = 37.8 bits (87), Expect = 0.54,   Method: Composition-based stats.
 Identities = 21/138 (15%), Positives = 48/138 (34%), Gaps = 16/138 (11%)

Query: 20  RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79
           R  A +A+ Q+   G S + ++               ++      D    + +  G +  
Sbjct: 8   RSIAAKAISQVLDQGQSLSTVL-------------PGLQKNISDKDRALLQELCFGTLRV 54

Query: 80  KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139
              ++  I   +    +  +   I   ++  G+ +L+    +P    ++E V  A     
Sbjct: 55  LPQLEWCIQQLMARPMTGKQ--RIFHYLIMIGLYQLVYTR-IPPHAALAETVEGATALKR 111

Query: 140 GDEPKFINAVLDKVSRKE 157
                 IN VL +  R++
Sbjct: 112 PQLKGLINGVLRQFQRQQ 129


>gi|71276447|ref|ZP_00652723.1| Fmu, rRNA SAM-dependent methyltransferase [Xylella fastidiosa
           Dixon]
 gi|71901280|ref|ZP_00683379.1| Fmu, rRNA SAM-dependent methyltransferase [Xylella fastidiosa
           Ann-1]
 gi|170730998|ref|YP_001776431.1| Sun protein [Xylella fastidiosa M12]
 gi|71162763|gb|EAO12489.1| Fmu, rRNA SAM-dependent methyltransferase [Xylella fastidiosa
           Dixon]
 gi|71728971|gb|EAO31103.1| Fmu, rRNA SAM-dependent methyltransferase [Xylella fastidiosa
           Ann-1]
 gi|167965791|gb|ACA12801.1| Sun protein [Xylella fastidiosa M12]
          Length = 429

 Score = 37.8 bits (87), Expect = 0.55,   Method: Composition-based stats.
 Identities = 21/92 (22%), Positives = 34/92 (36%), Gaps = 3/92 (3%)

Query: 65  DLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVE 124
           D      I   V+ R+   +  ++  L       R D  L  +L  G  +L +   VP  
Sbjct: 41  DRALVEAICFAVLRRRPVYEAALTRWLAR--PLGRGDAQLRGLLMVGFAQL-DVLKVPPY 97

Query: 125 VIISEYVCIAHDFFYGDEPKFINAVLDKVSRK 156
             +S  V       +     F+NAVL +  R+
Sbjct: 98  AALSATVDACRVLGWPHRVSFVNAVLRRAQRE 129


>gi|301155309|emb|CBW14775.1| 16S rRNA m5C967 methyltransferase,
           S-adenosyl-L-methionine-dependent [Haemophilus
           parainfluenzae T3T1]
          Length = 445

 Score = 37.4 bits (86), Expect = 0.61,   Method: Composition-based stats.
 Identities = 31/158 (19%), Positives = 55/158 (34%), Gaps = 19/158 (12%)

Query: 1   MTIQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESV 60
           M  Q  K +   +      R  A Q + Q+   G S + ++ E             V+S 
Sbjct: 1   MVFQRKKTEKSTALS---VRAIAAQVILQVLDQGKSLSTLLPE-------------VQSQ 44

Query: 61  YLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHS 120
               DL   + I  G+      ++ +I   L +         I+  +L  G+ +L+    
Sbjct: 45  VKPQDLPLLQEITFGICRVLPRLENIIKKLLDK--PLKGKTRIVHCLLLVGLYQLLYMR- 101

Query: 121 VPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEE 158
           VP    + E V              +N VL +  R++E
Sbjct: 102 VPAHAAVDEVVNATKSLKSDSFRGLVNGVLRRFLREQE 139


>gi|294638022|ref|ZP_06716282.1| ribosomal RNA small subunit methyltransferase B [Edwardsiella tarda
           ATCC 23685]
 gi|291088814|gb|EFE21375.1| ribosomal RNA small subunit methyltransferase B [Edwardsiella tarda
           ATCC 23685]
          Length = 430

 Score = 37.4 bits (86), Expect = 0.62,   Method: Composition-based stats.
 Identities = 20/109 (18%), Positives = 37/109 (33%), Gaps = 11/109 (10%)

Query: 55  LDVESVYLHVDLEWFRVIIHGVMDRKQHID----LLISSCLTEKWSFSRLDMILCSILRA 110
                     D    + +  G +     ++     L++  LT K         L  +L  
Sbjct: 31  PSAAQSLSEKDRALLQELCFGTLRVLPQLEWILQQLMAKALTGKQRP------LHYLLMV 84

Query: 111 GVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEI 159
           G+ +L+    +P    ++E V  A           IN VL +  R++E 
Sbjct: 85  GLYQLVYTR-IPPHAALAETVDGATALKRPQLKGLINGVLRQFQRQQEA 132


>gi|90415406|ref|ZP_01223340.1| hypothetical protein GB2207_08821 [marine gamma proteobacterium
           HTCC2207]
 gi|90332729|gb|EAS47899.1| hypothetical protein GB2207_08821 [marine gamma proteobacterium
           HTCC2207]
          Length = 439

 Score = 37.4 bits (86), Expect = 0.65,   Method: Composition-based stats.
 Identities = 20/120 (16%), Positives = 45/120 (37%), Gaps = 3/120 (2%)

Query: 37  TTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWS 96
             E+I++    +  +    +  S  +  D+  F+ +  G +     I+LL+   + +   
Sbjct: 7   VAEVIAQVLRGKSLSALLPEYASKVVEKDVGLFKQLCFGTLRWYPAIELLLQELMQK--P 64

Query: 97  FSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRK 156
               +  +  +L  G+ +L+    +     I+E V              +NAVL    R+
Sbjct: 65  MREKEFEIQGLLACGLYQLMHTR-IADHAAINETVTAVTKLKRPWAKGLVNAVLRNFLRQ 123


>gi|110678030|ref|YP_681037.1| rRNA methyltransferase RsmB [Roseobacter denitrificans OCh 114]
 gi|109454146|gb|ABG30351.1| rRNA methyltransferase RsmB [Roseobacter denitrificans OCh 114]
          Length = 423

 Score = 37.4 bits (86), Expect = 0.68,   Method: Composition-based stats.
 Identities = 16/95 (16%), Positives = 33/95 (34%), Gaps = 12/95 (12%)

Query: 63  HVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVP 122
             D      +    +   +  D ++   L++          + + LR G +EL  C    
Sbjct: 40  PEDRARAARLAQDTLRGLERADRILQKHLSKYPPL-----TVRNALRVGAVEL--CTGTA 92

Query: 123 VEVIISEYVCIA---HDFFYGDEPKFINAVLDKVS 154
              +++  V +      + +       NAVL KV+
Sbjct: 93  AHGVVNAMVELVSRHKHYSHLK--GLTNAVLRKVA 125


>gi|149190437|ref|ZP_01868708.1| Sun protein [Vibrio shilonii AK1]
 gi|148835691|gb|EDL52657.1| Sun protein [Vibrio shilonii AK1]
          Length = 425

 Score = 37.4 bits (86), Expect = 0.71,   Method: Composition-based stats.
 Identities = 22/139 (15%), Positives = 43/139 (30%), Gaps = 16/139 (11%)

Query: 20  RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79
           R AA   L+Q+   G S +  +                +      D    + I  G +  
Sbjct: 4   RAAAANILFQVVDKGQSLSSAL-------------PLGQQQVKPRDQALLQEICFGALRI 50

Query: 80  KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139
              ++ + S  + +         +   ++  G+ ++     +P    + E V        
Sbjct: 51  LPRLESVASELMDK--PLKGKQRVFHHLILVGIYQIGHMR-IPAHAAVGETVEATKTLKG 107

Query: 140 GDEPKFINAVLDKVSRKEE 158
                 INAVL    R +E
Sbjct: 108 PRLRGLINAVLRNYQRNQE 126


>gi|311696633|gb|ADP99506.1| Fmu, rRNA SAM-dependent methyltransferase [marine bacterium HP15]
          Length = 426

 Score = 37.4 bits (86), Expect = 0.74,   Method: Composition-based stats.
 Identities = 13/88 (14%), Positives = 31/88 (35%), Gaps = 3/88 (3%)

Query: 69  FRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIIS 128
            + + +G       +D  +++ L +     + D I+  ++   + +L         V ++
Sbjct: 37  LQALCYGTCRWFYRLDGELNNRLKK--PLRKPDRIIHHLMLVALFQLRFSQQANYAV-LN 93

Query: 129 EYVCIAHDFFYGDEPKFINAVLDKVSRK 156
           E V              +N VL    R+
Sbjct: 94  ETVEACRALDKPHLTGLVNGVLRAAERE 121


>gi|284032217|ref|YP_003382148.1| Fmu (Sun) domain-containing protein [Kribbella flavida DSM 17836]
 gi|283811510|gb|ADB33349.1| Fmu (Sun) domain protein [Kribbella flavida DSM 17836]
          Length = 459

 Score = 37.4 bits (86), Expect = 0.74,   Method: Composition-based stats.
 Identities = 26/156 (16%), Positives = 57/156 (36%), Gaps = 15/156 (9%)

Query: 1   MTIQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESV 60
           M+ +   ++     R    R  A + +    + G      ++  +  R         +  
Sbjct: 1   MSDR-TPRNRAPQRRPDKVRQVAYRVI--RQVNGEDGYANLALNKALR---------DQR 48

Query: 61  YLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHS 120
               D  +   ++HG +  +   D  ++  ++     + LD  L  +LR G  +L+    
Sbjct: 49  LSGRDAAFCTELVHGTLRWQGAYDAFLARSVSR--PLADLDPELLDLLRLGAHQLLRMR- 105

Query: 121 VPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRK 156
           V     ++E V +            +NAVL K+S++
Sbjct: 106 VDSYAAVNEMVTLTRAEVGQSRSGLVNAVLRKISQR 141


>gi|238797213|ref|ZP_04640714.1| Ribosomal RNA small subunit methyltransferase B [Yersinia
           mollaretii ATCC 43969]
 gi|238718850|gb|EEQ10665.1| Ribosomal RNA small subunit methyltransferase B [Yersinia
           mollaretii ATCC 43969]
          Length = 431

 Score = 37.4 bits (86), Expect = 0.78,   Method: Composition-based stats.
 Identities = 21/138 (15%), Positives = 48/138 (34%), Gaps = 16/138 (11%)

Query: 20  RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79
           R  A +A+ Q+   G S + ++               + +     D    + +  G +  
Sbjct: 8   RSIAAKAISQVLDQGQSLSTVL-------------PGLHNSISDKDRALLQELCFGTLRV 54

Query: 80  KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139
              ++  I   +    +  +   +   ++  G+ +LI    +P    ++E V  A     
Sbjct: 55  LPQLEWCIQQLMARPMTGKQ--RVFHYLIMVGLYQLIYTR-IPHHAALAETVEGATALKR 111

Query: 140 GDEPKFINAVLDKVSRKE 157
                 IN VL +  R++
Sbjct: 112 PQLKGLINGVLRQFQRQQ 129


>gi|237728623|ref|ZP_04559104.1| 16S rRNA m5C967 methyltransferase [Citrobacter sp. 30_2]
 gi|226909245|gb|EEH95163.1| 16S rRNA m5C967 methyltransferase [Citrobacter sp. 30_2]
          Length = 439

 Score = 37.0 bits (85), Expect = 0.80,   Method: Composition-based stats.
 Identities = 16/127 (12%), Positives = 45/127 (35%), Gaps = 3/127 (2%)

Query: 32  IIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCL 91
           +   +   +    E  +  ++    ++      D    + +  GV+     ++ +I   +
Sbjct: 17  LRSMTAQAVEQVVEKGQSLSNVLPAMQQKVADKDKALLQELCFGVLRTLSQLEWMIQQLM 76

Query: 92  TEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLD 151
               +  +    +  ++  G  +L+    +P    ++E V  A           IN VL 
Sbjct: 77  ERPMTGKQ--RTVHYLIMVGFYQLLHTR-IPAHAALAETVEGAVVIKRPQLKGLINGVLR 133

Query: 152 KVSRKEE 158
           +  R+++
Sbjct: 134 QFQRRQD 140


>gi|217977604|ref|YP_002361751.1| sun protein [Methylocella silvestris BL2]
 gi|217502980|gb|ACK50389.1| sun protein [Methylocella silvestris BL2]
          Length = 448

 Score = 37.0 bits (85), Expect = 0.82,   Method: Composition-based stats.
 Identities = 18/99 (18%), Positives = 33/99 (33%), Gaps = 12/99 (12%)

Query: 65  DLEWFRVIIHGVMDRKQHIDLLISSCLTEK--WSFSRLDMILCSILRAGVLELIECHSVP 122
           D+   R I+   + R   I   +   L +      + L+  L +       +++    VP
Sbjct: 56  DVALTRSIVTAALRRLGTIRKTLGEFLDKGLPRPVAHLEWTLIA----AAAQILF-LDVP 110

Query: 123 VEVIISEYVCIAHDFFYGDEPKF---INAVLDKVSRKEE 158
               +   V             F   INAVL  ++R  +
Sbjct: 111 DHAAVDLAVRATR--LENKSAPFAGVINAVLRNIARGRD 147


>gi|284161464|ref|YP_003400087.1| Fmu (Sun) domain protein [Archaeoglobus profundus DSM 5631]
 gi|284011461|gb|ADB57414.1| Fmu (Sun) domain protein [Archaeoglobus profundus DSM 5631]
          Length = 443

 Score = 37.0 bits (85), Expect = 0.91,   Method: Composition-based stats.
 Identities = 26/147 (17%), Positives = 52/147 (35%), Gaps = 8/147 (5%)

Query: 26  ALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDL 85
            +Y  +++     ++I E +     A        +  H         +  +  R   ID 
Sbjct: 1   MIYTQELV-AEVLKVIEETKLSEKEAIKRCLSGKISDHAIWSSVHAYVFEIEKRLNLIDF 59

Query: 86  LISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKF 145
           ++ +C  E   F + + +  ++LR GV E+     V   +     V I    F       
Sbjct: 60  ILRNCFRE---FDKQNTVFKNLLRVGVYEM-HFKGVHPALATDSIVRIVKQRFNLKMASL 115

Query: 146 INAVLDKVSR---KEEIKRSGCVSAIT 169
            NAVL +  +   +   ++ G V  + 
Sbjct: 116 ANAVLRRAEKFDYERRFRKLGKVKRLA 142


>gi|149923466|ref|ZP_01911869.1| serine/threonine kinase PKN8 [Plesiocystis pacifica SIR-1]
 gi|149815657|gb|EDM75186.1| serine/threonine kinase PKN8 [Plesiocystis pacifica SIR-1]
          Length = 1489

 Score = 37.0 bits (85), Expect = 0.95,   Method: Composition-based stats.
 Identities = 19/93 (20%), Positives = 31/93 (33%), Gaps = 4/93 (4%)

Query: 16  RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV--II 73
           R  AR  A  ALY+   +  S    +  Y       D     E +    D         +
Sbjct: 898 RSGARERAA-ALYEQAGVPSSLERALEIYRDLHQFEDARRIAERLAEGGDAAHLAEAQTL 956

Query: 74  HGVMDRKQHIDLLISSCLTEKWSFSRLDMILCS 106
               + +  +DL + + L E W   +   +L S
Sbjct: 957 RRWAEPETSLDLDLRAALDEGWHIEQ-PGVLRS 988


>gi|297537409|ref|YP_003673178.1| sun protein [Methylotenera sp. 301]
 gi|297256756|gb|ADI28601.1| sun protein [Methylotenera sp. 301]
          Length = 439

 Score = 36.6 bits (84), Expect = 1.0,   Method: Composition-based stats.
 Identities = 13/93 (13%), Positives = 35/93 (37%), Gaps = 9/93 (9%)

Query: 69  FRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIIS 128
            + + +G +     ID  +   L +  +  R++    ++L   + +L+   +    V+ +
Sbjct: 43  AQDLSYGTLRFYGEIDAYLVQLLEKPLTDDRIN----ALLLVAIYQLLHDKADSFTVV-N 97

Query: 129 EYVCIAHDFF--YGDE--PKFINAVLDKVSRKE 157
           + V                  +NA+L    R++
Sbjct: 98  QAVHAVSQLKRPAPKSWAKGLVNAILRNFLRQK 130


>gi|254437147|ref|ZP_05050641.1| Methyltransferase small domain family [Octadecabacter antarcticus
           307]
 gi|198252593|gb|EDY76907.1| Methyltransferase small domain family [Octadecabacter antarcticus
           307]
          Length = 410

 Score = 36.6 bits (84), Expect = 1.1,   Method: Composition-based stats.
 Identities = 17/96 (17%), Positives = 35/96 (36%), Gaps = 8/96 (8%)

Query: 62  LHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSV 121
              D    + +    +      D +++  L +    S     + ++LR   +EL      
Sbjct: 25  SPEDRARAQRLTTETLRGLARADRMLARFLQKTPPLS-----VRNVLRLCTVEL-AGGEA 78

Query: 122 PVEVIISEYVC-IAHDFFYGDEPKFINAVLDKVSRK 156
              V+ +  V  +A +         +NAVL KV+ +
Sbjct: 79  AYGVV-NAGVEMVARNKRTSSMKGLVNAVLRKVAAE 113


>gi|317486052|ref|ZP_07944905.1| ribosomal RNA small subunit methyltransferase B [Bilophila
           wadsworthia 3_1_6]
 gi|316922679|gb|EFV43912.1| ribosomal RNA small subunit methyltransferase B [Bilophila
           wadsworthia 3_1_6]
          Length = 364

 Score = 36.6 bits (84), Expect = 1.1,   Method: Composition-based stats.
 Identities = 12/63 (19%), Positives = 22/63 (34%)

Query: 98  SRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKE 157
            +L   +  ++     EL+    +P    +S  V      F     +  N VL  + R  
Sbjct: 5   EKLPASMKLMIGIAAYELLYLDRIPAHASVSAAVDAVRARFGQGLSRVANGVLRSLIRLS 64

Query: 158 EIK 160
           E +
Sbjct: 65  ESE 67


>gi|255026239|ref|ZP_05298225.1| transcription antitermination protein NusB [Listeria
          monocytogenes FSL J2-003]
          Length = 36

 Score = 36.6 bits (84), Expect = 1.1,   Method: Composition-based stats.
 Identities = 11/27 (40%), Positives = 17/27 (62%)

Query: 15 RRGIARLAAVQALYQIDIIGCSTTEII 41
          +R  AR  A+QAL+QI++   S  + I
Sbjct: 2  KRREAREKALQALFQIELNEMSLDQAI 28


>gi|325267933|ref|ZP_08134582.1| ribosomal RNA small subunit methyltransferase B [Kingella
           denitrificans ATCC 33394]
 gi|324980619|gb|EGC16282.1| ribosomal RNA small subunit methyltransferase B [Kingella
           denitrificans ATCC 33394]
          Length = 421

 Score = 36.6 bits (84), Expect = 1.1,   Method: Composition-based stats.
 Identities = 19/104 (18%), Positives = 38/104 (36%), Gaps = 5/104 (4%)

Query: 55  LDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLE 114
           L  E      D    + + +G       +  +++  L +       + +L + L   + +
Sbjct: 31  LAGEPALSAQDKGMLQDLAYGCQRFYGSLHFMLNRLLNK--PVD--NPLLYAHLLVALYQ 86

Query: 115 LIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEE 158
           L    + P  V+ +E V        G    F NA+L +  R+ E
Sbjct: 87  LNHTRNAPYAVV-NETVRHIGKIGRGQYRSFANAILRRFLRERE 129


>gi|120552984|ref|YP_957335.1| sun protein [Marinobacter aquaeolei VT8]
 gi|120322833|gb|ABM17148.1| 16S rRNA m(5)C-967 methyltransferase [Marinobacter aquaeolei VT8]
          Length = 433

 Score = 36.6 bits (84), Expect = 1.1,   Method: Composition-based stats.
 Identities = 13/88 (14%), Positives = 30/88 (34%), Gaps = 3/88 (3%)

Query: 69  FRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIIS 128
            + I +G       ++  ++  L +     + D I+  ++   + +L         V ++
Sbjct: 44  LQAICYGTCRWFHRLEGELNQRLKK--PLRKPDRIIHHLMLVALFQLRYSEQATYAV-LN 100

Query: 129 EYVCIAHDFFYGDEPKFINAVLDKVSRK 156
           E V              +N VL    R+
Sbjct: 101 ETVEACRALDKPHLTGLVNGVLRAAERE 128


>gi|223984315|ref|ZP_03634458.1| hypothetical protein HOLDEFILI_01752 [Holdemania filiformis DSM
           12042]
 gi|223963715|gb|EEF68084.1| hypothetical protein HOLDEFILI_01752 [Holdemania filiformis DSM
           12042]
          Length = 412

 Score = 36.6 bits (84), Expect = 1.2,   Method: Composition-based stats.
 Identities = 23/143 (16%), Positives = 47/143 (32%), Gaps = 34/143 (23%)

Query: 20  RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79
           R  A Q L            I++E +                   +  W   +I+GV+  
Sbjct: 5   RKRAWQGL----------NAILNEGQYANLWLRQHG---QTLSEEEKRWVTAVIYGVLRH 51

Query: 80  KQHIDLLISSCLTEKWSFSRL-----DMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134
           ++ +          +W +  L     +  +  +L   V +L          I+++ V + 
Sbjct: 52  REPL----------RWQWRDLVRNVPEPSVAVLLDMSVYQLFYLDKGAEYAIVNDAVELC 101

Query: 135 HDFFYGDEPK-FINAVLDKVSRK 156
                    K  +NAVL ++ R+
Sbjct: 102 -----PRSKKGLVNAVLRQLLRR 119


>gi|256825115|ref|YP_003149075.1| tRNA/rRNA cytosine-C5-methylase [Kytococcus sedentarius DSM 20547]
 gi|256688508|gb|ACV06310.1| tRNA/rRNA cytosine-C5-methylase [Kytococcus sedentarius DSM 20547]
          Length = 502

 Score = 36.6 bits (84), Expect = 1.2,   Method: Composition-based stats.
 Identities = 19/94 (20%), Positives = 37/94 (39%), Gaps = 3/94 (3%)

Query: 65  DLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVE 124
           D  +   +  G + ++   DL+I+       +   LD  L   LR G  + +    VP  
Sbjct: 66  DAAFATELAFGTVRQQGLYDLVIARA--TGRAVDTLDPELMRTLRLGAHQALSMR-VPPH 122

Query: 125 VIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEE 158
               + V +A         K +NA + +++ K+ 
Sbjct: 123 AAADQTVALARWVNGAGPAKLVNAAMHRMTEKDR 156


>gi|56698200|ref|YP_168572.1| ribosomal RNA small subunit methyltransferase B, putative [Ruegeria
           pomeroyi DSS-3]
 gi|56679937|gb|AAV96603.1| ribosomal RNA small subunit methyltransferase B, putative [Ruegeria
           pomeroyi DSS-3]
          Length = 423

 Score = 36.6 bits (84), Expect = 1.2,   Method: Composition-based stats.
 Identities = 28/139 (20%), Positives = 47/139 (33%), Gaps = 20/139 (14%)

Query: 17  GIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGV 76
             AR +A+  L QI   G   +E +      R   +     + + L              
Sbjct: 6   TQARQSAIDLLDQILGEGRLLSECLGAGALDRLPPEERARAQRLTLD------------T 53

Query: 77  MDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEV-IISEYVCIAH 135
           +   +  D L+   L +    S     + + LR G +EL    +    V  + E V  + 
Sbjct: 54  LRGLERADRLLKPHLQKAPPLS-----VRNALRLGTVELAHGEAAHGVVHSMVEIVGRSR 108

Query: 136 DFFYGDEPKFINAVLDKVS 154
                     +NAVL KV+
Sbjct: 109 RHGRLK--GLVNAVLRKVA 125


>gi|254450298|ref|ZP_05063735.1| rRNA methyltransferase RsmB [Octadecabacter antarcticus 238]
 gi|198264704|gb|EDY88974.1| rRNA methyltransferase RsmB [Octadecabacter antarcticus 238]
          Length = 410

 Score = 36.6 bits (84), Expect = 1.3,   Method: Composition-based stats.
 Identities = 16/96 (16%), Positives = 35/96 (36%), Gaps = 8/96 (8%)

Query: 62  LHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSV 121
              D    + +    +      D +++  L +    S     + ++LR   +EL    + 
Sbjct: 25  SPEDRARAQRLTTETLRGLARADRMLARFLAKTPPLS-----VRNVLRLCTVELAGGEAA 79

Query: 122 PVEVIISEYVC-IAHDFFYGDEPKFINAVLDKVSRK 156
               +++  V  +A           +NAVL KV+ +
Sbjct: 80  HG--VVNAGVEMVARSQRTSSMKGLVNAVLRKVAAE 113


>gi|21233175|ref|NP_639092.1| Sun protein [Xanthomonas campestris pv. campestris str. ATCC 33913]
 gi|46396948|sp|Q8P4G1|RSMB_XANCP RecName: Full=Ribosomal RNA small subunit methyltransferase B;
           AltName: Full=16S rRNA m5C967 methyltransferase;
           AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
           rsmB
 gi|21115024|gb|AAM43004.1| Sun protein [Xanthomonas campestris pv. campestris str. ATCC 33913]
          Length = 437

 Score = 36.6 bits (84), Expect = 1.3,   Method: Composition-based stats.
 Identities = 19/108 (17%), Positives = 35/108 (32%), Gaps = 3/108 (2%)

Query: 49  FCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSIL 108
             A+    +  V    D      I   V+ R+   D+ +   L         D  L ++L
Sbjct: 31  LKAELTAALPGVSDPRDRALVEAICFAVLRRRPAYDVALRQWLERPLPPR--DAELKALL 88

Query: 109 RAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRK 156
                  ++   +P    +S  V          +   +NAVL +  R+
Sbjct: 89  -MAGFAQLDVLQLPAHAALSATVEACRALGRPRQAGMVNAVLRRAQRE 135


>gi|295665386|ref|XP_002793244.1| RING finger protein [Paracoccidioides brasiliensis Pb01]
 gi|226278158|gb|EEH33724.1| RING finger protein [Paracoccidioides brasiliensis Pb01]
          Length = 782

 Score = 36.6 bits (84), Expect = 1.3,   Method: Composition-based stats.
 Identities = 13/75 (17%), Positives = 27/75 (36%), Gaps = 8/75 (10%)

Query: 3   IQDNKKDLKLSHRR---GIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVES 59
           I   ++ +K+  RR    +AR  A+Q           + E ++         + ELDV  
Sbjct: 149 ITRQQRRVKMEERRAEIRVAREEAIQ-----QRSDSRSEEALNNLPNEDDIDEMELDVPG 203

Query: 60  VYLHVDLEWFRVIIH 74
                   ++  ++ 
Sbjct: 204 WEEKGRWVFYLDLVT 218


>gi|212695669|ref|ZP_03303797.1| hypothetical protein ANHYDRO_00186 [Anaerococcus hydrogenalis DSM
           7454]
 gi|212677342|gb|EEB36949.1| hypothetical protein ANHYDRO_00186 [Anaerococcus hydrogenalis DSM
           7454]
          Length = 426

 Score = 36.6 bits (84), Expect = 1.3,   Method: Composition-based stats.
 Identities = 13/49 (26%), Positives = 19/49 (38%), Gaps = 2/49 (4%)

Query: 110 AGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEE 158
            G+  +          I++E V +     Y     F+NAVL    R EE
Sbjct: 77  IGIYNI-HFLDRKNYAIVNELVNLTKKVSY-KSKSFVNAVLRSYIRDEE 123


>gi|66770115|ref|YP_244877.1| Sun protein [Xanthomonas campestris pv. campestris str. 8004]
 gi|66575447|gb|AAY50857.1| Sun protein [Xanthomonas campestris pv. campestris str. 8004]
          Length = 437

 Score = 36.6 bits (84), Expect = 1.3,   Method: Composition-based stats.
 Identities = 19/108 (17%), Positives = 35/108 (32%), Gaps = 3/108 (2%)

Query: 49  FCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSIL 108
             A+    +  V    D      I   V+ R+   D+ +   L         D  L ++L
Sbjct: 31  LKAELTAALPGVSDPRDRALVEAICFAVLRRRPAYDVALRQWLERPLPPR--DAELKALL 88

Query: 109 RAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRK 156
                  ++   +P    +S  V          +   +NAVL +  R+
Sbjct: 89  -MAGFAQLDVLQLPAHAALSATVEACRALGRPRQAGMVNAVLRRAQRE 135


>gi|195122964|ref|XP_002005980.1| GI18797 [Drosophila mojavensis]
 gi|193911048|gb|EDW09915.1| GI18797 [Drosophila mojavensis]
          Length = 965

 Score = 36.2 bits (83), Expect = 1.4,   Method: Composition-based stats.
 Identities = 15/78 (19%), Positives = 32/78 (41%), Gaps = 4/78 (5%)

Query: 5   DNKKDLKLSHRRGIARLAA--VQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYL 62
               D K + +R +    A  +QA++QI + G     ++ E         ++L+      
Sbjct: 399 PKHPDYKYNAKRSVYNELAAPLQAVFQIPLTGAEVFAVLKELRGRYRRELSKLNSLGDKY 458

Query: 63  HVDLEWFRVI--IHGVMD 78
              L +F  +  + GV++
Sbjct: 459 KSRLWYFEKMHFLRGVIE 476


>gi|188993323|ref|YP_001905333.1| Ribosomal RNA small subunit methyltransferase B [Xanthomonas
           campestris pv. campestris str. B100]
 gi|167735083|emb|CAP53295.1| Ribosomal RNA small subunit methyltransferase B [Xanthomonas
           campestris pv. campestris]
          Length = 436

 Score = 36.2 bits (83), Expect = 1.4,   Method: Composition-based stats.
 Identities = 19/108 (17%), Positives = 35/108 (32%), Gaps = 3/108 (2%)

Query: 49  FCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSIL 108
             A+    +  V    D      I   V+ R+   D+ +   L         D  L ++L
Sbjct: 30  LKAELTAALPGVSDPRDRALVEAICFAVLRRRPAYDVALRQWLERPLPPR--DAELKALL 87

Query: 109 RAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRK 156
                  ++   +P    +S  V          +   +NAVL +  R+
Sbjct: 88  -MAGFAQLDVLQLPAHAALSATVEACRALGRPRQAGMVNAVLRRAQRE 134


>gi|168333376|ref|ZP_02691656.1| Signal Transduction Histidine Kinase (STHK) with CheB and CheR
           activity [Epulopiscium sp. 'N.t. morphotype B']
          Length = 503

 Score = 36.2 bits (83), Expect = 1.4,   Method: Composition-based stats.
 Identities = 16/54 (29%), Positives = 26/54 (48%), Gaps = 9/54 (16%)

Query: 86  LISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139
           LIS  L EK        +  +I +  ++EL++   +P  VII+E   + H F  
Sbjct: 292 LISHKLAEK-------SVDRAIGK--IIELLQQEYIPKGVIINESYELIHSFGD 336


>gi|88809531|ref|ZP_01125039.1| hypothetical protein WH7805_10274 [Synechococcus sp. WH 7805]
 gi|88786750|gb|EAR17909.1| hypothetical protein WH7805_10274 [Synechococcus sp. WH 7805]
          Length = 1070

 Score = 36.2 bits (83), Expect = 1.5,   Method: Composition-based stats.
 Identities = 29/172 (16%), Positives = 60/172 (34%), Gaps = 41/172 (23%)

Query: 2   TIQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVY 61
           + + ++    L+  R  +R       ++I + G      +SE           +D  +  
Sbjct: 721 SAKQSQAARDLARTRKGSR-------FRIALTGTPVENRVSELWAL-------MDFLNPN 766

Query: 62  LHVDLEWFRVIIH------GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLEL 115
           +  + E+FR          G M   + +   +   +       RL     +I+       
Sbjct: 767 VLGEEEFFRQRYRMPIERYGDMSSLRDLKSRVGPFI-----LRRL-KTDKAII------- 813

Query: 116 IECHSVPVEVIISEYVCIAHDFFYGDE--PKFINAVLDKVSRKEEIKRSGCV 165
                +P +V +SE+V ++ +         K +   LD ++R    KR G V
Sbjct: 814 ---SDLPEKVELSEWVGLSKE---QKSLYAKTVENTLDAIARAPRGKRHGQV 859


>gi|283835706|ref|ZP_06355447.1| hypothetical protein CIT292_10098 [Citrobacter youngae ATCC 29220]
 gi|291068385|gb|EFE06494.1| ribosomal RNA small subunit methyltransferase B [Citrobacter
           youngae ATCC 29220]
          Length = 429

 Score = 36.2 bits (83), Expect = 1.6,   Method: Composition-based stats.
 Identities = 22/139 (15%), Positives = 49/139 (35%), Gaps = 16/139 (11%)

Query: 20  RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79
           R  A QA+ Q+   G S + ++               ++      D    + +  G +  
Sbjct: 8   RSMAAQAVEQVVEKGQSLSNVL-------------PAMQQKVADKDKALLQELCFGALRT 54

Query: 80  KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139
              ++ +I   +    +  +    +  ++  G  +L+    +P    ++E V  A     
Sbjct: 55  LSQLEWMIQQLMERPMTGKQ--RTVHYLIMVGFYQLLHTR-IPPHAALAETVEGAVVIKR 111

Query: 140 GDEPKFINAVLDKVSRKEE 158
                 IN VL +  R++E
Sbjct: 112 PQLKGLINGVLRQFQRRQE 130


>gi|121602907|ref|YP_988410.1| putative ribosomal RNA small subunit methyltransferase B
           [Bartonella bacilliformis KC583]
 gi|120615084|gb|ABM45685.1| putative ribosomal RNA small subunit methyltransferase B
           [Bartonella bacilliformis KC583]
          Length = 456

 Score = 36.2 bits (83), Expect = 1.7,   Method: Composition-based stats.
 Identities = 17/98 (17%), Positives = 29/98 (29%), Gaps = 14/98 (14%)

Query: 65  DLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVE 124
           D    R I+   +  +  I   +S  LT           L  +      +++    +P  
Sbjct: 49  DRLLCRAILIAALRHRGQIQAALSRFLTR--PLPSKAFALQHLFHISAAQILY-LDIPDY 105

Query: 125 VIISEYVCIAHD------FFYGDEPKFINAVLDKVSRK 156
             I   V  A        F        +NA+L   +R 
Sbjct: 106 AAIDLAVRAAKIDPRTRCFSG-----LVNAILRNFARD 138


>gi|74316034|ref|YP_313774.1| Fmu, rRNA SAM-dependent methyltransferase [Thiobacillus
           denitrificans ATCC 25259]
 gi|74055529|gb|AAZ95969.1| Fmu, rRNA SAM-dependent methyltransferase [Thiobacillus
           denitrificans ATCC 25259]
          Length = 418

 Score = 36.2 bits (83), Expect = 1.7,   Method: Composition-based stats.
 Identities = 19/88 (21%), Positives = 34/88 (38%), Gaps = 8/88 (9%)

Query: 69  FRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIIS 128
            + +++G + +   ID  + + L    +    D  L S+LR  + ++      P   I+ 
Sbjct: 41  LQDLVYGSLRQLGRIDAWLDALLERPLT----DPHLESLLRIALYQMAYTR-APAHAIVH 95

Query: 129 EYVCIAHDFFYGDEPKFINAVLDKVSRK 156
             V  A     G      NAVL    R+
Sbjct: 96  NAVSAA---GGGWRRGLANAVLRNFQRR 120


>gi|331215993|ref|XP_003320676.1| hypothetical protein PGTG_02698 [Puccinia graminis f. sp. tritici
           CRL 75-36-700-3]
 gi|309299666|gb|EFP76257.1| hypothetical protein PGTG_02698 [Puccinia graminis f. sp. tritici
           CRL 75-36-700-3]
          Length = 541

 Score = 36.2 bits (83), Expect = 1.8,   Method: Composition-based stats.
 Identities = 19/91 (20%), Positives = 29/91 (31%), Gaps = 20/91 (21%)

Query: 69  FRVIIHGVMD-RKQHIDLL------ISSCLTEKWSF-----SRLDMILCSILRAGVLELI 116
               + G+M  + Q ID        +   L  KW        R+  +  +ILR  +    
Sbjct: 28  LDEYLKGIMQLQHQSIDQANVDRSALMESLKSKWELRQANADRIAKLEEAILRMAI---K 84

Query: 117 ECHSVPVEVIISEY--VCIAHDFFYGDEPKF 145
                P   I  E   + +   F   D P F
Sbjct: 85  NESDTPSTRI--EAGRIDL-QRFRSSDGPLF 112


>gi|262202278|ref|YP_003273486.1| Fmu (Sun) domain-containing protein [Gordonia bronchialis DSM
           43247]
 gi|262085625|gb|ACY21593.1| Fmu (Sun) domain protein [Gordonia bronchialis DSM 43247]
          Length = 460

 Score = 36.2 bits (83), Expect = 1.8,   Method: Composition-based stats.
 Identities = 25/140 (17%), Positives = 47/140 (33%), Gaps = 14/140 (10%)

Query: 19  ARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMD 78
           AR+AA   L  +         ++ +    R    T           D      + +G   
Sbjct: 19  ARVAARDTLRAVRERDAYANLVLPKMLRERHI--T---------GRDAALATELTYGTAR 67

Query: 79  RKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFF 138
            +    +            + +D  L  +LR G  +L+    +     +S  V +     
Sbjct: 68  AQGI--IDAIIAAAAGRPVAEIDGQLLDVLRLGAYQLL-RTRIGSHAAVSTSVDLVRAEN 124

Query: 139 YGDEPKFINAVLDKVSRKEE 158
                 F+NAVL K+S+++E
Sbjct: 125 GMGPAGFVNAVLRKISQRDE 144


>gi|66812050|ref|XP_640204.1| hypothetical protein DDB_G0282689 [Dictyostelium discoideum AX4]
 gi|60468194|gb|EAL66204.1| hypothetical protein DDB_G0282689 [Dictyostelium discoideum AX4]
          Length = 798

 Score = 35.8 bits (82), Expect = 1.8,   Method: Composition-based stats.
 Identities = 17/81 (20%), Positives = 33/81 (40%), Gaps = 12/81 (14%)

Query: 48  RFCADTELD------VESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFS--- 98
           RF  D+E D              D+++   I+H  +  ++ I+  + +    K+S     
Sbjct: 48  RFREDSENDSFGISNNNGNGNGGDIDY--QILHNSVKNQEEINQKVKNRFNRKYSKEIIK 105

Query: 99  -RLDMILCSILRAGVLELIEC 118
            RL  +  +I R  + EL+  
Sbjct: 106 FRLTSLEEAITRIKIAELLFQ 126


>gi|307543963|ref|YP_003896442.1| Sun protein [Halomonas elongata DSM 2581]
 gi|307215987|emb|CBV41257.1| K03500 Sun protein [Halomonas elongata DSM 2581]
          Length = 447

 Score = 35.8 bits (82), Expect = 1.9,   Method: Composition-based stats.
 Identities = 18/100 (18%), Positives = 36/100 (36%), Gaps = 3/100 (3%)

Query: 57  VESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELI 116
            E   +  D   F+ +  G       ++ L    L +   F   D  + ++L  G+ +L+
Sbjct: 42  DEHQVVARDRGLFKELCFGTCRALPRLEALAGKLLEK--PFKTRDADIQALLLVGIYQLL 99

Query: 117 ECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRK 156
               VP    + E    A         + +N  L ++ R+
Sbjct: 100 YLR-VPAHAAVGETAGAARLLSKAWATRVLNGCLRRLQRE 138


>gi|224543282|ref|ZP_03683821.1| hypothetical protein CATMIT_02482 [Catenibacterium mitsuokai DSM
          15897]
 gi|224523815|gb|EEF92920.1| hypothetical protein CATMIT_02482 [Catenibacterium mitsuokai DSM
          15897]
          Length = 80

 Score = 35.8 bits (82), Expect = 1.9,   Method: Composition-based stats.
 Identities = 18/79 (22%), Positives = 31/79 (39%), Gaps = 9/79 (11%)

Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
          R IAR  AV A+YQ   +  S  E+               D   +      ++   +I  
Sbjct: 6  RQIAREKAVIAVYQWLTVDASKEELKEYVHA---------DEALIEGRSAEQFCYWLIDT 56

Query: 76 VMDRKQHIDLLISSCLTEK 94
          VM+ K   + L+++ L + 
Sbjct: 57 VMENKGSYEALLNTKLKKD 75


>gi|254466360|ref|ZP_05079771.1| Fmu [Rhodobacterales bacterium Y4I]
 gi|206687268|gb|EDZ47750.1| Fmu [Rhodobacterales bacterium Y4I]
          Length = 420

 Score = 35.8 bits (82), Expect = 2.0,   Method: Composition-based stats.
 Identities = 19/106 (17%), Positives = 36/106 (33%), Gaps = 14/106 (13%)

Query: 59  SVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELI-- 116
                 D    + +    +   +  D L+   L +         ++ + LR G +EL   
Sbjct: 35  EKLAPEDRARAQRLAVETLRSLERADRLLKKHLKKTPPL-----MVMNALRLGTVELCSG 89

Query: 117 --ECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIK 160
                 V   V I     ++    +G     +NAVL KV+ +   +
Sbjct: 90  GAAHGVVNAMVAI-----VSKHRRHGQLKGLVNAVLRKVAEEGPAE 130


>gi|227115242|ref|ZP_03828898.1| 16S rRNA methyltransferase B [Pectobacterium carotovorum subsp.
           brasiliensis PBR1692]
          Length = 429

 Score = 35.8 bits (82), Expect = 2.0,   Method: Composition-based stats.
 Identities = 16/97 (16%), Positives = 34/97 (35%), Gaps = 3/97 (3%)

Query: 62  LHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSV 121
              D    + +  GV+     ++  I   + +    +     L  ++  G+ +L     +
Sbjct: 37  SDKDRALLQELCFGVLRVLPQLEWCIQQLMAK--PLTGKQRTLHYLIMVGIYQLHYTR-I 93

Query: 122 PVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEE 158
           P    ++E V              IN VL +  R++E
Sbjct: 94  PPHAALAETVEGTVSLKRPQLKGLINGVLRQFQRQQE 130


>gi|54307485|ref|YP_128505.1| putative transcriptional regulator [Photobacterium profundum SS9]
 gi|46911905|emb|CAG18703.1| Putative transcriptional regulator [Photobacterium profundum SS9]
          Length = 188

 Score = 35.8 bits (82), Expect = 2.0,   Method: Composition-based stats.
 Identities = 26/141 (18%), Positives = 39/141 (27%), Gaps = 26/141 (18%)

Query: 3   IQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRF-CADTELDVESVY 61
            QD K D K+     + R    QAL++          I  E+      C     +     
Sbjct: 59  PQDGKPDRKVYSITDLGR----QALFEWFQEPARNPTIRDEFSAKLLVCGVHNSEPMQQQ 114

Query: 62  LHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGV--------- 112
           L   +E    ++ G     + I               R   +    LR GV         
Sbjct: 115 LEALIEESHTLM-GHYAELEKI------HFANHKEMDRQSRLDRLTLRRGVHNRQAWIYW 167

Query: 113 -----LELIECHSVPVEVIIS 128
                 EL +  S    V I+
Sbjct: 168 AEEVLAELKDMDSTDSNVQIN 188


>gi|283783338|ref|YP_003374092.1| phage capsid family protein [Gardnerella vaginalis 409-05]
 gi|283441951|gb|ADB14417.1| phage capsid family protein [Gardnerella vaginalis 409-05]
          Length = 315

 Score = 35.8 bits (82), Expect = 2.0,   Method: Composition-based stats.
 Identities = 15/80 (18%), Positives = 32/80 (40%), Gaps = 12/80 (15%)

Query: 81  QHIDLLISSCLTEKWSFSRLDMILC---SILRAGVLELIECHSVPVEVIISEYV--CIAH 135
           +  D  I + +  K  F R+D+      +++R G         +  +  I E++   +  
Sbjct: 96  KDYDANIITHMPIKDGFKRIDVTDYTLVNLIRLGT---DFTADLDFD--IEEFITSELTK 150

Query: 136 DFFYGDEPKFINAVLDKVSR 155
            F   +   FIN   D +++
Sbjct: 151 QFTLSESEAFING--DGITK 168


>gi|15222583|ref|NP_173912.1| ATIPT6; ATP binding / adenylate dimethylallyltransferase/ tRNA
           isopentenyltransferase [Arabidopsis thaliana]
 gi|75169133|sp|Q9C6L1|IPT6_ARATH RecName: Full=Adenylate isopentenyltransferase 6, chloroplastic;
           Short=AtIPT6; AltName: Full=Adenylate
           dimethylallyltransferase 6; AltName: Full=Cytokinin
           synthase 6; Flags: Precursor
 gi|12321506|gb|AAG50809.1|AC079281_11 tRNA isopentenyl transferase, putative [Arabidopsis thaliana]
 gi|14279064|dbj|BAB59045.1| adenylate isopentenyltransferase [Arabidopsis thaliana]
 gi|332192498|gb|AEE30619.1| adenylate isopentenyltransferase 6 [Arabidopsis thaliana]
          Length = 342

 Score = 35.8 bits (82), Expect = 2.1,   Method: Composition-based stats.
 Identities = 20/110 (18%), Positives = 35/110 (31%), Gaps = 19/110 (17%)

Query: 41  ISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHI----DLLISSCLTEKWS 96
           + E++ Y      E+D     L     +    + G+ +R   +       I   +   W 
Sbjct: 235 VEEFDRYFRVYPKEMDKGIWDLARKAAY-EETVKGMKERTCRLVKKQKEKIMKLIRGGWE 293

Query: 97  FSRLDMILCSILRAGVLEL---------IECHSVPVEVIISEYVCIAHDF 137
             RLD    +I+     EL              +  + I+ E V I   F
Sbjct: 294 IKRLDAT-AAIM----AELNQSTAKGEGKNGREIWEKHIVDESVEIVKKF 338


>gi|289524256|ref|ZP_06441110.1| Sun protein [Anaerobaculum hydrogeniformans ATCC BAA-1850]
 gi|289502912|gb|EFD24076.1| Sun protein [Anaerobaculum hydrogeniformans ATCC BAA-1850]
          Length = 440

 Score = 35.8 bits (82), Expect = 2.1,   Method: Composition-based stats.
 Identities = 26/131 (19%), Positives = 44/131 (33%), Gaps = 14/131 (10%)

Query: 40  IISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSR 99
           I  E     F +             + +    +++  M R      ++ S L     F  
Sbjct: 10  IWEETRKGLFLSQVLRRFGEDLPEGERKLASTLVYCAMRRYNLWVEILRSFLRR--PFET 67

Query: 100 LDMILCSILRAGVL---ELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVS-- 154
           L      IL  G     E+     VP  ++ + +V         D    +NAVL K++  
Sbjct: 68  LQAETRDILILGCAGLLEIKHF--VPQSLV-NAFVEATKKKNPADAA-LVNAVLRKIASD 123

Query: 155 ---RKEEIKRS 162
              + EE+K S
Sbjct: 124 GREKLEELKNS 134


>gi|312173998|emb|CBX82251.1| Ribosomal RNA small subunit methyltransferase B [Erwinia amylovora
           ATCC BAA-2158]
          Length = 429

 Score = 35.8 bits (82), Expect = 2.2,   Method: Composition-based stats.
 Identities = 17/122 (13%), Positives = 45/122 (36%), Gaps = 12/122 (9%)

Query: 32  IIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCL 91
           I   +  +++ + ++    ++     +      D    + + +GV+     ++ +IS  +
Sbjct: 10  IAARTIEQVVEQGQS---LSNVLPAAQKCVDDKDAALVQELCYGVLRTLPQLEWVISKLM 66

Query: 92  TEKWSFSRLDMILCSI---LRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINA 148
           +       +     +I   +  G+ +L+    +P    ++E V  A           IN 
Sbjct: 67  SCP-----MTGKQRAIHFLIMVGLYQLMFTR-IPPHAALAETVEGAVALKRPQLKGLING 120

Query: 149 VL 150
           VL
Sbjct: 121 VL 122


>gi|227328919|ref|ZP_03832943.1| 16S rRNA methyltransferase B [Pectobacterium carotovorum subsp.
           carotovorum WPP14]
          Length = 429

 Score = 35.8 bits (82), Expect = 2.2,   Method: Composition-based stats.
 Identities = 16/97 (16%), Positives = 35/97 (36%), Gaps = 3/97 (3%)

Query: 62  LHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSV 121
              D    + +  G++     ++  I   + +    +     L  ++  G+ +L     +
Sbjct: 37  SDKDRALLQELCFGLLRVLPQLEWCIQQLMAK--PLTGKQRTLHYLIMVGIYQLQYTR-I 93

Query: 122 PVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEE 158
           P    ++E V  A           IN VL +  R++E
Sbjct: 94  PPHAALAETVEGAVTLKKPQLKGLINGVLRQFQRQQE 130


>gi|304399258|ref|ZP_07381124.1| sun protein [Pantoea sp. aB]
 gi|304353184|gb|EFM17565.1| sun protein [Pantoea sp. aB]
          Length = 433

 Score = 35.8 bits (82), Expect = 2.3,   Method: Composition-based stats.
 Identities = 19/102 (18%), Positives = 36/102 (35%), Gaps = 3/102 (2%)

Query: 57  VESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELI 116
            +      D    + I  GV+     ++ LI   +      +    +L  ++  G+ +L 
Sbjct: 32  AQKKLSDKDSALVQEICFGVLRTLPQLEALIGKLMAR--PLTGKQRVLHYLIMVGLYQLE 89

Query: 117 ECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEE 158
               VP    ++E V  A           +N VL +  R+ E
Sbjct: 90  YTR-VPAHAALAETVAGAEVLKRTSLKGLLNGVLRQFQRQRE 130


>gi|126738334|ref|ZP_01754055.1| ribosomal RNA small subunit methyltransferase B, putative
           [Roseobacter sp. SK209-2-6]
 gi|126720831|gb|EBA17536.1| ribosomal RNA small subunit methyltransferase B, putative
           [Roseobacter sp. SK209-2-6]
          Length = 432

 Score = 35.8 bits (82), Expect = 2.3,   Method: Composition-based stats.
 Identities = 18/106 (16%), Positives = 36/106 (33%), Gaps = 14/106 (13%)

Query: 59  SVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIE- 117
                 +    + +    +   +  D ++   L +          + + LR G +EL + 
Sbjct: 47  ERLAPDERARAQRLAAETLRSLERADRILQKHLKKSTPL-----TVHNALRLGTVELCQG 101

Query: 118 ---CHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIK 160
                 V   V I     I+    +G     +NAVL KV+ +   +
Sbjct: 102 GAAHGVVNAMVTI-----ISKHRRHGKLKGLVNAVLRKVAEQGPAE 142


>gi|125539478|gb|EAY85873.1| hypothetical protein OsI_07234 [Oryza sativa Indica Group]
          Length = 464

 Score = 35.8 bits (82), Expect = 2.3,   Method: Composition-based stats.
 Identities = 16/90 (17%), Positives = 27/90 (30%), Gaps = 26/90 (28%)

Query: 70  RVIIHGVMDRKQHIDLLISSCLTEKW--------SFSRLDMILCSILRAGVLELIECHSV 121
           R +  GV+      D + S+     W            L +I  +++R           V
Sbjct: 166 RGLALGVIVHHSACDGVGSTHFLHTWAAACAGDRKLPELPVIDRTLIR----------DV 215

Query: 122 PVE-----VIISEYVCIAHDFFYGDEPKFI 146
           P          +E   +   F   D  KF+
Sbjct: 216 PDRHDEFAAPTNEAKEL---FKAPDAGKFV 242


>gi|148240736|ref|YP_001226123.1| SNF2 family DNA/RNA helicase [Synechococcus sp. WH 7803]
 gi|147849275|emb|CAK24826.1| Superfamily II DNA/RNA helicases, SNF2 family [Synechococcus sp. WH
           7803]
          Length = 1070

 Score = 35.5 bits (81), Expect = 2.3,   Method: Composition-based stats.
 Identities = 29/172 (16%), Positives = 60/172 (34%), Gaps = 41/172 (23%)

Query: 2   TIQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVY 61
           + + ++    L+  R  +R       ++I + G      +SE           +D  +  
Sbjct: 721 SAKQSQAARDLARTRKGSR-------FRIALTGTPVENRVSELWAL-------MDFLNPS 766

Query: 62  LHVDLEWFRVIIH------GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLEL 115
           +  + E+FR          G M   + +   +   +       RL     +I+       
Sbjct: 767 VLGEEEFFRQRYRMPIERYGDMSSLRDLKSRVGPFI-----LRRL-KTDKAII------- 813

Query: 116 IECHSVPVEVIISEYVCIAHDFFYGDE--PKFINAVLDKVSRKEEIKRSGCV 165
                +P +V +SE+V ++ +         K +   LD ++R    KR G V
Sbjct: 814 ---SDLPEKVELSEWVGLSKE---QKSLYAKTVEDTLDAIARAPRGKRHGQV 859


>gi|110832990|ref|YP_691849.1| tRNA and rRNA cytosine-C5-methylase [Alcanivorax borkumensis SK2]
 gi|110646101|emb|CAL15577.1| tRNA and rRNA cytosine-C5-methylase, putative [Alcanivorax
           borkumensis SK2]
          Length = 447

 Score = 35.5 bits (81), Expect = 2.3,   Method: Composition-based stats.
 Identities = 21/102 (20%), Positives = 37/102 (36%), Gaps = 3/102 (2%)

Query: 54  ELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVL 113
           E+  +      D    R I  GV    + ++  ++  L++          +   L AG+ 
Sbjct: 39  EVLRDFPLQGSDGGQMRDICFGVCRHLRPLNHWLNQQLSK--PLKGSAQPVRLALLAGLY 96

Query: 114 ELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSR 155
           EL    + P   I++ Y  +             NAVL K S+
Sbjct: 97  EL-WFSNRPAHAIVNAYPQLCRKLKAPWAAGLSNAVLRKASQ 137


>gi|307352529|ref|YP_003893580.1| hypothetical protein Mpet_0368 [Methanoplanus petrolearius DSM
           11571]
 gi|307155762|gb|ADN35142.1| hypothetical protein Mpet_0368 [Methanoplanus petrolearius DSM
           11571]
          Length = 575

 Score = 35.5 bits (81), Expect = 2.4,   Method: Composition-based stats.
 Identities = 14/82 (17%), Positives = 30/82 (36%), Gaps = 9/82 (10%)

Query: 55  LDVESVYLHVDLEWFRVII---HGV-MDRKQHIDLLISSCLTEKWSFSRLDMILCSILRA 110
            ++       +   F  +I   +G+ + R   ID  ++  L        +        +A
Sbjct: 352 GEIPGELSKAEPVIFDSLIDPENGIEIVRDDEIDSTMTPLLRRPSPLEEISDTE---FKA 408

Query: 111 GVLELIECHSVPVEVI--ISEY 130
           G+ E +     PV ++  I+E 
Sbjct: 409 GISEFLGLPPGPVGLVDEINEA 430


>gi|163745468|ref|ZP_02152828.1| rRNA methyltransferase RsmB [Oceanibulbus indolifex HEL-45]
 gi|161382286|gb|EDQ06695.1| rRNA methyltransferase RsmB [Oceanibulbus indolifex HEL-45]
          Length = 423

 Score = 35.5 bits (81), Expect = 2.5,   Method: Composition-based stats.
 Identities = 26/138 (18%), Positives = 47/138 (34%), Gaps = 19/138 (13%)

Query: 18  IARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVM 77
            AR +AV   Y +D+I      ++SE            D        D    + +    +
Sbjct: 7   QARRSAV---YLLDMILDDEPRLMSELLASGALDKLPPD--------DRARAQRLAQDTL 55

Query: 78  DRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDF 137
              +  D L+   L +          + ++LR G +EL  C       +++  V +    
Sbjct: 56  RGLERADRLLQKHLQKAPPL-----TVRNVLRVGTVEL--CQGGAAHGVVNAMVNLVSQH 108

Query: 138 FY-GDEPKFINAVLDKVS 154
                     NAVL K++
Sbjct: 109 RTLSHLKGLTNAVLRKIA 126


>gi|325849117|ref|ZP_08170609.1| putative ribosomal RNA small subunit methyltransferase B
           [Anaerococcus hydrogenalis ACS-025-V-Sch4]
 gi|325480362|gb|EGC83425.1| putative ribosomal RNA small subunit methyltransferase B
           [Anaerococcus hydrogenalis ACS-025-V-Sch4]
          Length = 426

 Score = 35.5 bits (81), Expect = 2.5,   Method: Composition-based stats.
 Identities = 12/49 (24%), Positives = 19/49 (38%), Gaps = 2/49 (4%)

Query: 110 AGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEE 158
            G+  +          I++E V +     Y     F+NA+L    R EE
Sbjct: 77  IGIYNI-HFLDRKNYAIVNELVNLTKKVSY-KSKSFVNAILRSYIRDEE 123


>gi|325577101|ref|ZP_08147585.1| RNA methyltransferase Sun [Haemophilus parainfluenzae ATCC 33392]
 gi|325160683|gb|EGC72804.1| RNA methyltransferase Sun [Haemophilus parainfluenzae ATCC 33392]
          Length = 445

 Score = 35.5 bits (81), Expect = 2.5,   Method: Composition-based stats.
 Identities = 9/38 (23%), Positives = 14/38 (36%)

Query: 121 VPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEE 158
           VP    + E V              +N VL +  R++E
Sbjct: 102 VPAHAAVDEVVNATKSLKSDSFRGLVNGVLRRFLREKE 139


>gi|258563930|ref|XP_002582710.1| hypothetical protein UREG_07483 [Uncinocarpus reesii 1704]
 gi|237908217|gb|EEP82618.1| hypothetical protein UREG_07483 [Uncinocarpus reesii 1704]
          Length = 550

 Score = 35.5 bits (81), Expect = 2.8,   Method: Composition-based stats.
 Identities = 14/57 (24%), Positives = 27/57 (47%), Gaps = 1/57 (1%)

Query: 32  IIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLIS 88
           + G  T E++ E     F  D     E      D ++FR +++ V+ +K+ I+ L+ 
Sbjct: 450 LNGKVTEEVVRELVDQGFMVDYAPPSEDDTFARDGKFFRCVVN-VLTKKETIEALVD 505


>gi|262037542|ref|ZP_06011001.1| putative ribosomal RNA small subunit methyltransferase B
           [Leptotrichia goodfellowii F0264]
 gi|261748472|gb|EEY35852.1| putative ribosomal RNA small subunit methyltransferase B
           [Leptotrichia goodfellowii F0264]
          Length = 442

 Score = 35.5 bits (81), Expect = 2.9,   Method: Composition-based stats.
 Identities = 13/54 (24%), Positives = 21/54 (38%), Gaps = 2/54 (3%)

Query: 105 CSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEE 158
             +LR  V +L          ++ E V +A          F+NA L  V R ++
Sbjct: 83  KQLLRISVAQL-FFTEADNAGVLYEAVEVAKIINNHQS-GFVNATLQSVLRNKD 134


>gi|332184460|gb|AEE26714.1| Ribosomal RNA small subunit methyltransferase B [Francisella cf.
           novicida 3523]
          Length = 426

 Score = 35.5 bits (81), Expect = 3.0,   Method: Composition-based stats.
 Identities = 20/125 (16%), Positives = 47/125 (37%), Gaps = 8/125 (6%)

Query: 32  IIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCL 91
           I   +  EI+     Y      +  +       D  + +++ +        ++ + S  L
Sbjct: 6   IAAKAILEILDN--KYSLLTLEQKLLSHNLSEQDKSFVKLLCYEFFRHYYSLEKIASLYL 63

Query: 92  TEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLD 151
            +K   +   +I+  +L+  + E+ +    P    I+E V    D       K +N +L 
Sbjct: 64  KQKTKITAKVLIMLGVLQ--IFEVKQ----PYYATINESVSACKDLKIIWAKKLVNGILR 117

Query: 152 KVSRK 156
           +++R 
Sbjct: 118 EITRN 122


>gi|325924335|ref|ZP_08185879.1| ribosomal RNA small subunit methyltransferase RsmB [Xanthomonas
           gardneri ATCC 19865]
 gi|325545200|gb|EGD16510.1| ribosomal RNA small subunit methyltransferase RsmB [Xanthomonas
           gardneri ATCC 19865]
          Length = 436

 Score = 35.1 bits (80), Expect = 3.1,   Method: Composition-based stats.
 Identities = 17/108 (15%), Positives = 35/108 (32%), Gaps = 3/108 (2%)

Query: 49  FCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSIL 108
             A+    +  +    D      I   V+ R+   D+ +   L         D  L ++L
Sbjct: 30  LKAELAASLPGLSDPRDRALVEAICFAVLRRRPAYDVALRQWLERPLPPR--DAELKALL 87

Query: 109 RAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRK 156
                  ++   +P    +S  V          +   +NA+L +  R+
Sbjct: 88  -MAGFAQLDVLQLPAHAALSATVDACRALGRPRQAGMVNAILRRAQRE 134


>gi|53729217|ref|ZP_00348347.1| COG0144: tRNA and rRNA cytosine-C5-methylases [Actinobacillus
           pleuropneumoniae serovar 1 str. 4074]
 gi|126209024|ref|YP_001054249.1| ribosomal RNA small subunit methyltransferase B [Actinobacillus
           pleuropneumoniae L20]
 gi|165976991|ref|YP_001652584.1| SUN protein [Actinobacillus pleuropneumoniae serovar 3 str. JL03]
 gi|190150891|ref|YP_001969416.1| ribosomal RNA small subunit methyltransferase B [Actinobacillus
           pleuropneumoniae serovar 7 str. AP76]
 gi|303252922|ref|ZP_07339079.1| SUN protein [Actinobacillus pleuropneumoniae serovar 2 str. 4226]
 gi|307248606|ref|ZP_07530620.1| Ribosomal RNA small subunit methyltransferase B [Actinobacillus
           pleuropneumoniae serovar 2 str. S1536]
 gi|307250839|ref|ZP_07532767.1| Ribosomal RNA small subunit methyltransferase B [Actinobacillus
           pleuropneumoniae serovar 4 str. M62]
 gi|307255464|ref|ZP_07537270.1| Ribosomal RNA small subunit methyltransferase B [Actinobacillus
           pleuropneumoniae serovar 9 str. CVJ13261]
 gi|307257633|ref|ZP_07539392.1| Ribosomal RNA small subunit methyltransferase B [Actinobacillus
           pleuropneumoniae serovar 10 str. D13039]
 gi|307259916|ref|ZP_07541629.1| Ribosomal RNA small subunit methyltransferase B [Actinobacillus
           pleuropneumoniae serovar 11 str. 56153]
 gi|307264244|ref|ZP_07545834.1| Ribosomal RNA small subunit methyltransferase B [Actinobacillus
           pleuropneumoniae serovar 13 str. N273]
 gi|126097816|gb|ABN74644.1| ribosomal RNA small subunit methyltransferase B [Actinobacillus
           pleuropneumoniae serovar 5b str. L20]
 gi|165877092|gb|ABY70140.1| SUN protein [Actinobacillus pleuropneumoniae serovar 3 str. JL03]
 gi|189916022|gb|ACE62274.1| ribosomal RNA small subunit methyltransferase B [Actinobacillus
           pleuropneumoniae serovar 7 str. AP76]
 gi|302648230|gb|EFL78429.1| SUN protein [Actinobacillus pleuropneumoniae serovar 2 str. 4226]
 gi|306854817|gb|EFM87006.1| Ribosomal RNA small subunit methyltransferase B [Actinobacillus
           pleuropneumoniae serovar 2 str. S1536]
 gi|306857089|gb|EFM89217.1| Ribosomal RNA small subunit methyltransferase B [Actinobacillus
           pleuropneumoniae serovar 4 str. M62]
 gi|306861506|gb|EFM93494.1| Ribosomal RNA small subunit methyltransferase B [Actinobacillus
           pleuropneumoniae serovar 9 str. CVJ13261]
 gi|306863808|gb|EFM95732.1| Ribosomal RNA small subunit methyltransferase B [Actinobacillus
           pleuropneumoniae serovar 10 str. D13039]
 gi|306865944|gb|EFM97819.1| Ribosomal RNA small subunit methyltransferase B [Actinobacillus
           pleuropneumoniae serovar 11 str. 56153]
 gi|306870415|gb|EFN02169.1| Ribosomal RNA small subunit methyltransferase B [Actinobacillus
           pleuropneumoniae serovar 13 str. N273]
          Length = 432

 Score = 35.1 bits (80), Expect = 3.1,   Method: Composition-based stats.
 Identities = 28/155 (18%), Positives = 49/155 (31%), Gaps = 38/155 (24%)

Query: 15  RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74
           ++  AR  A Q + Q+   G S   +I E              ++     DL   + I  
Sbjct: 2   KKQNARAVAAQIILQVLDQGKSLATLIPE-------------AQAKLEAKDLPLVQEITF 48

Query: 75  GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHS-----------VPV 123
           GV      ++ +I+  + +                 G   L+ C             VP 
Sbjct: 49  GVCRTLPRLEAVIAQAVEK--PLK------------GKTRLVHCLLLVGLYQLLYMRVPE 94

Query: 124 EVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEE 158
              + E V  A      +    IN VL +  R+++
Sbjct: 95  FAAVDEVVNAARSLKLDNFKALINGVLRRFLREKD 129


>gi|307246481|ref|ZP_07528553.1| Ribosomal RNA small subunit methyltransferase B [Actinobacillus
           pleuropneumoniae serovar 1 str. 4074]
 gi|306852544|gb|EFM84777.1| Ribosomal RNA small subunit methyltransferase B [Actinobacillus
           pleuropneumoniae serovar 1 str. 4074]
          Length = 432

 Score = 35.1 bits (80), Expect = 3.2,   Method: Composition-based stats.
 Identities = 28/155 (18%), Positives = 49/155 (31%), Gaps = 38/155 (24%)

Query: 15  RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74
           ++  AR  A Q + Q+   G S   +I E              ++     DL   + I  
Sbjct: 2   KKQNARAVAAQIILQVLDQGKSLATLIPE-------------AQAKLEAKDLPLVQEITF 48

Query: 75  GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHS-----------VPV 123
           GV      ++ +I+  + +                 G   L+ C             VP 
Sbjct: 49  GVCRTLPRLEAVIAQAVEK--PLK------------GKTRLVHCLLLVGLYQLLYMRVPE 94

Query: 124 EVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEE 158
              + E V  A      +    IN VL +  R+++
Sbjct: 95  FAAVDEVVNAARSLKLDNFKALINGVLRRFLREKD 129


>gi|307262046|ref|ZP_07543700.1| Ribosomal RNA small subunit methyltransferase B [Actinobacillus
           pleuropneumoniae serovar 12 str. 1096]
 gi|306868225|gb|EFN00048.1| Ribosomal RNA small subunit methyltransferase B [Actinobacillus
           pleuropneumoniae serovar 12 str. 1096]
          Length = 432

 Score = 35.1 bits (80), Expect = 3.3,   Method: Composition-based stats.
 Identities = 28/155 (18%), Positives = 49/155 (31%), Gaps = 38/155 (24%)

Query: 15  RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74
           ++  AR  A Q + Q+   G S   +I E              ++     DL   + I  
Sbjct: 2   KKQNARAVAAQIILQVLDQGKSLATLIPE-------------AQAKLEAKDLPLVQEITF 48

Query: 75  GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHS-----------VPV 123
           GV      ++ +I+  + +                 G   L+ C             VP 
Sbjct: 49  GVCRTLPRLEAVIAQAVEK--PLK------------GKTRLVHCLLLVGLYQLLYMRVPE 94

Query: 124 EVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEE 158
              + E V  A      +    IN VL +  R+++
Sbjct: 95  FAAVDEVVNAARSLKLDNFKALINGVLRRFLREKD 129


>gi|256544908|ref|ZP_05472279.1| sun protein [Anaerococcus vaginalis ATCC 51170]
 gi|256399407|gb|EEU13013.1| sun protein [Anaerococcus vaginalis ATCC 51170]
          Length = 426

 Score = 35.1 bits (80), Expect = 3.3,   Method: Composition-based stats.
 Identities = 20/113 (17%), Positives = 46/113 (40%), Gaps = 4/113 (3%)

Query: 46  TYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILC 105
           +Y+    T++  E      D+ +    I+GV++ K +++ +++     K       + L 
Sbjct: 15  SYKNEKSTDIINEIAKKVEDISYITKNIYGVLENKLYLEYILAKLSKIKVKKLDKKVKLI 74

Query: 106 SILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEE 158
            +   G+  +          I++E V +     +     F+NA+L    R E+
Sbjct: 75  LL--IGIYNI-HFLDRKNYAIVNELVNLTKKVSF-KSKSFVNAILRSYIRDEK 123


>gi|289209431|ref|YP_003461497.1| sun protein [Thioalkalivibrio sp. K90mix]
 gi|288945062|gb|ADC72761.1| sun protein [Thioalkalivibrio sp. K90mix]
          Length = 451

 Score = 35.1 bits (80), Expect = 3.4,   Method: Composition-based stats.
 Identities = 17/105 (16%), Positives = 38/105 (36%), Gaps = 3/105 (2%)

Query: 65  DLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVE 124
           D  W + + +  +     +  L++  L       + D ++  +L  G+ EL+   +    
Sbjct: 52  DAAWVQALAYTTLRWYPQLSALVNGFLER--PLRKKDAVIGVLLAQGLAELMHFSTRDHA 109

Query: 125 VIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRSGCVSAIT 169
             + E   +A           INAVL +  R+++   +       
Sbjct: 110 -AVRETAELARAIHRPGAVGLINAVLRRAQREQDALEAAVREDPA 153


>gi|120435016|ref|YP_860702.1| two-component system sensor histidine kinase [Gramella forsetii
           KT0803]
 gi|117577166|emb|CAL65635.1| two-component system sensor histidine kinase [Gramella forsetii
           KT0803]
          Length = 525

 Score = 35.1 bits (80), Expect = 3.4,   Method: Composition-based stats.
 Identities = 10/39 (25%), Positives = 20/39 (51%), Gaps = 3/39 (7%)

Query: 96  SFSRLDMILCSILRAGVLELIECHSVPVEV---IISEYV 131
             SR++ +   ILR+ + EL+    +   V   +I+E +
Sbjct: 157 RLSRMEEVEKDILRSAISELVVRLPLHKRVSEEVINELI 195


>gi|254461752|ref|ZP_05075168.1| rRNA methyltransferase RsmB [Rhodobacterales bacterium HTCC2083]
 gi|206678341|gb|EDZ42828.1| rRNA methyltransferase RsmB [Rhodobacteraceae bacterium HTCC2083]
          Length = 423

 Score = 35.1 bits (80), Expect = 3.4,   Method: Composition-based stats.
 Identities = 16/93 (17%), Positives = 34/93 (36%), Gaps = 8/93 (8%)

Query: 65  DLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVE 124
           D    + +    +   + +D ++   L +    +     + ++LR    EL  C      
Sbjct: 42  DRARAQRLASETLRSLERVDRIMKPFLRKPPPLA-----VHNVLRIATYEL--CTGGAAH 94

Query: 125 VIISEYV-CIAHDFFYGDEPKFINAVLDKVSRK 156
            ++++ V  +  +          NAVL KV  K
Sbjct: 95  GVVNDAVSSVGANKRTEKLKGLTNAVLRKVVDK 127


>gi|303249608|ref|ZP_07335814.1| SUN protein [Actinobacillus pleuropneumoniae serovar 6 str. Femo]
 gi|307253218|ref|ZP_07535093.1| Ribosomal RNA small subunit methyltransferase B [Actinobacillus
           pleuropneumoniae serovar 6 str. Femo]
 gi|302651541|gb|EFL81691.1| SUN protein [Actinobacillus pleuropneumoniae serovar 6 str. Femo]
 gi|306859306|gb|EFM91344.1| Ribosomal RNA small subunit methyltransferase B [Actinobacillus
           pleuropneumoniae serovar 6 str. Femo]
          Length = 432

 Score = 35.1 bits (80), Expect = 3.5,   Method: Composition-based stats.
 Identities = 28/155 (18%), Positives = 49/155 (31%), Gaps = 38/155 (24%)

Query: 15  RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74
           ++  AR  A Q + Q+   G S   +I E              ++     DL   + I  
Sbjct: 2   KKQNARAVAAQIILQVLDQGKSLATLIPE-------------AQAKLEAKDLPLVQEITF 48

Query: 75  GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHS-----------VPV 123
           GV      ++ +I+  + +                 G   L+ C             VP 
Sbjct: 49  GVCRTLPRLEAVIAQAVEK--PLK------------GKTRLVHCLLLVGLYQLLYMRVPE 94

Query: 124 EVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEE 158
              + E V  A      +    IN VL +  R+++
Sbjct: 95  FAAVDEVVNAARSLKLDNFKALINGVLRRFLREKD 129


>gi|67525297|ref|XP_660710.1| hypothetical protein AN3106.2 [Aspergillus nidulans FGSC A4]
 gi|40744501|gb|EAA63677.1| hypothetical protein AN3106.2 [Aspergillus nidulans FGSC A4]
          Length = 1679

 Score = 35.1 bits (80), Expect = 3.6,   Method: Composition-based stats.
 Identities = 19/102 (18%), Positives = 34/102 (33%), Gaps = 5/102 (4%)

Query: 17   GIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGV 76
               R   ++AL+   + G    +   E  +   C D +       +      F   ++G 
Sbjct: 1579 SATRKRDIEALFPSRMRGNGLEDAWGEVTSASICTDYQSRRLGTRVRGVKSVFPHTVNGT 1638

Query: 77   MDRKQHIDLLISSCLTEKWSFSRLDMILCSILR--AGVLELI 116
                  +   I   L   W   R  ++L  +LR   G  E+I
Sbjct: 1639 AVAVPRVLAAI---LENGWDAERKVVVLPEVLRPFMGGAEVI 1677


>gi|242011052|ref|XP_002426271.1| GTPase mss1, putative [Pediculus humanus corporis]
 gi|212510334|gb|EEB13533.1| GTPase mss1, putative [Pediculus humanus corporis]
          Length = 694

 Score = 35.1 bits (80), Expect = 3.8,   Method: Composition-based stats.
 Identities = 16/85 (18%), Positives = 32/85 (37%), Gaps = 5/85 (5%)

Query: 25  QALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHID 84
           QALYQ++    + +++   +          ++    +   D      II  V      + 
Sbjct: 161 QALYQME---GNLSKLYKTWRANLLKNLAHVEAYIDFSE-DENIENDIIENVHKNLTVLK 216

Query: 85  LLISSCLTEKWSFSRL-DMILCSIL 108
             I + L++     RL D I  +I+
Sbjct: 217 NEIENHLSDGRKGERLRDGIKTAII 241


>gi|303256329|ref|ZP_07342345.1| ribosomal RNA small subunit methyltransferase B [Burkholderiales
           bacterium 1_1_47]
 gi|330999024|ref|ZP_08322749.1| ribosomal RNA small subunit methyltransferase B [Parasutterella
           excrementihominis YIT 11859]
 gi|302861058|gb|EFL84133.1| ribosomal RNA small subunit methyltransferase B [Burkholderiales
           bacterium 1_1_47]
 gi|329575766|gb|EGG57292.1| ribosomal RNA small subunit methyltransferase B [Parasutterella
           excrementihominis YIT 11859]
          Length = 434

 Score = 34.7 bits (79), Expect = 4.1,   Method: Composition-based stats.
 Identities = 14/64 (21%), Positives = 25/64 (39%), Gaps = 5/64 (7%)

Query: 97  FSRLDMIL-CSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYG--DEPKFINAVLDKV 153
            SR       +++   +  L E    P  V+ +E V  A            F+NA+L + 
Sbjct: 65  ISRAPADDVLALIELALGLLSEGKEKPFTVV-NEAVAAAKH-SRKMVKAANFVNAILRRF 122

Query: 154 SRKE 157
            R++
Sbjct: 123 GREK 126


>gi|212703769|ref|ZP_03311897.1| hypothetical protein DESPIG_01817 [Desulfovibrio piger ATCC 29098]
 gi|212672737|gb|EEB33220.1| hypothetical protein DESPIG_01817 [Desulfovibrio piger ATCC 29098]
          Length = 505

 Score = 34.7 bits (79), Expect = 4.1,   Method: Composition-based stats.
 Identities = 16/106 (15%), Positives = 33/106 (31%), Gaps = 3/106 (2%)

Query: 50  CADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILR 109
             DT    E      D      + +G +  +  +  ++   L +          L ++  
Sbjct: 67  LEDTARRQEGGLAERDRHLAAELAYGTLRMENRLAFVLGKVLRQPLKLPLPLRRLLAV-- 124

Query: 110 AGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSR 155
                L+    +P   ++   V +A   +     K +N  L  V R
Sbjct: 125 -AAYGLLFLDRLPAHAVLHTAVDLARQLYGPGLAKVVNGSLRSVQR 169


>gi|84622205|ref|YP_449577.1| Sun protein [Xanthomonas oryzae pv. oryzae MAFF 311018]
 gi|188574935|ref|YP_001911864.1| ribosomal RNA small subunit methyltransferase B [Xanthomonas oryzae
           pv. oryzae PXO99A]
 gi|84366145|dbj|BAE67303.1| Sun protein [Xanthomonas oryzae pv. oryzae MAFF 311018]
 gi|188519387|gb|ACD57332.1| ribosomal RNA small subunit methyltransferase B [Xanthomonas oryzae
           pv. oryzae PXO99A]
          Length = 437

 Score = 34.7 bits (79), Expect = 4.3,   Method: Composition-based stats.
 Identities = 19/108 (17%), Positives = 37/108 (34%), Gaps = 3/108 (2%)

Query: 49  FCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSIL 108
             A+    +  +    D      I   V+ R+   D+ +   L         D  L ++L
Sbjct: 31  LKAELAATLPGIGDPRDRALVEAICFAVIRRRPAYDVALRQWLERPLPPR--DAELKALL 88

Query: 109 RAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRK 156
             G  +L +   +P    +S  V          +   +NA+L +  R+
Sbjct: 89  MVGFAQL-DVLQLPAHAALSATVDACRALGRPRQAGMVNAILRRAQRE 135


>gi|325926148|ref|ZP_08187509.1| ribosomal RNA small subunit methyltransferase RsmB [Xanthomonas
           perforans 91-118]
 gi|325543493|gb|EGD14915.1| ribosomal RNA small subunit methyltransferase RsmB [Xanthomonas
           perforans 91-118]
          Length = 436

 Score = 34.7 bits (79), Expect = 4.4,   Method: Composition-based stats.
 Identities = 19/108 (17%), Positives = 37/108 (34%), Gaps = 3/108 (2%)

Query: 49  FCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSIL 108
             A+    +  +    D      I   V+ R+   D+ +   L         D  L ++L
Sbjct: 30  LKAELAATLPGIGDPRDRALVEAICFAVIRRRPAYDIALRQWLERALPPR--DAELKALL 87

Query: 109 RAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRK 156
             G  +L +   +P    +S  V          +   +NA+L +  R+
Sbjct: 88  MVGFAQL-DVLQLPAHAALSATVDACRALGRPRQAGMVNAILRRAQRE 134


>gi|332519332|ref|ZP_08395799.1| von Willebrand factor type A [Lacinutrix algicola 5H-3-7-4]
 gi|332045180|gb|EGI81373.1| von Willebrand factor type A [Lacinutrix algicola 5H-3-7-4]
          Length = 345

 Score = 34.7 bits (79), Expect = 4.5,   Method: Composition-based stats.
 Identities = 4/16 (25%), Positives = 9/16 (56%)

Query: 126 IISEYVCIAHDFFYGD 141
            I+E + +A  ++  D
Sbjct: 171 AINEAIELAKTYYDDD 186


>gi|78049480|ref|YP_365655.1| ribosomal RNA small subunit methyltransferase B [Xanthomonas
           campestris pv. vesicatoria str. 85-10]
 gi|78037910|emb|CAJ25655.1| ribosomal RNA small subunit methyltransferase B [Xanthomonas
           campestris pv. vesicatoria str. 85-10]
          Length = 436

 Score = 34.7 bits (79), Expect = 4.6,   Method: Composition-based stats.
 Identities = 19/108 (17%), Positives = 37/108 (34%), Gaps = 3/108 (2%)

Query: 49  FCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSIL 108
             A+    +  +    D      I   V+ R+   D+ +   L         D  L ++L
Sbjct: 30  LKAELAATLPGIGDPRDRALVEAICFAVIRRRPAYDVALRQWLERALPPR--DAELKALL 87

Query: 109 RAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRK 156
             G  +L +   +P    +S  V          +   +NA+L +  R+
Sbjct: 88  MVGFAQL-DVLQLPAHAALSATVDACRALGRPRQAGMVNAILRRAQRE 134


>gi|85375086|ref|YP_459148.1| tRNA and rRNA cytosine-C5-methylase [Erythrobacter litoralis
           HTCC2594]
 gi|84788169|gb|ABC64351.1| tRNA and rRNA cytosine-C5-methylase [Erythrobacter litoralis
           HTCC2594]
          Length = 415

 Score = 34.7 bits (79), Expect = 4.7,   Method: Composition-based stats.
 Identities = 24/111 (21%), Positives = 36/111 (32%), Gaps = 20/111 (18%)

Query: 19  ARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMD 78
           AR AA+Q L            ++   ET        L    V    D    R I +  + 
Sbjct: 9   ARRAALQML----------DAVLRRGETLEQAEGAALR--QVRSAPDKALARAIANETLR 56

Query: 79  RKQHIDLLISSCLTEKWSFSRL--DMILCSILRAGVLELIECHSVPVEVII 127
                D LI S   +     RL  D    ++LR  + + +     P   +I
Sbjct: 57  WLTDFDALIDSATKQ-----RLPDDAKARTVLRLMLAQWL-RLETPPHAVI 101


>gi|166713736|ref|ZP_02244943.1| Sun protein [Xanthomonas oryzae pv. oryzicola BLS256]
          Length = 437

 Score = 34.7 bits (79), Expect = 4.7,   Method: Composition-based stats.
 Identities = 19/108 (17%), Positives = 37/108 (34%), Gaps = 3/108 (2%)

Query: 49  FCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSIL 108
             A+    +  +    D      I   V+ R+   D+ +   L         D  L ++L
Sbjct: 31  LKAELAATLPGIGDPRDRALVEAICFAVIRRRPAYDVALRQWLERPLPPR--DAELKALL 88

Query: 109 RAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRK 156
             G  +L +   +P    +S  V          +   +NA+L +  R+
Sbjct: 89  MVGFAQL-DVLQLPAHAALSATVDACRALGRPRQAGMVNAILRRAQRE 135


>gi|254486947|ref|ZP_05100152.1| rRNA methyltransferase RsmB [Roseobacter sp. GAI101]
 gi|214043816|gb|EEB84454.1| rRNA methyltransferase RsmB [Roseobacter sp. GAI101]
          Length = 423

 Score = 34.7 bits (79), Expect = 4.8,   Method: Composition-based stats.
 Identities = 27/142 (19%), Positives = 49/142 (34%), Gaps = 24/142 (16%)

Query: 18  IARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVM 77
            AR +AV   Y +D+I      +  E       A   LD        D    + +    +
Sbjct: 7   QARRSAV---YLLDMI------LGEERLMSELLAAGVLD---KLPPDDRARAQRLALDTL 54

Query: 78  DRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA--- 134
              +  D L+   L++          + + LR G +EL  C       +++  V +    
Sbjct: 55  RGMERADRLLQKHLSKYPPL-----TVRNALRVGTVEL--CQGGAAHGVVNAMVELVATH 107

Query: 135 HDFFYGDEPKFINAVLDKVSRK 156
               +       NAVL K++ +
Sbjct: 108 KKLGHLK--GLTNAVLRKIAAE 127


>gi|255024990|ref|ZP_05296976.1| hypothetical protein LmonocyFSL_18485 [Listeria monocytogenes FSL
           J1-208]
          Length = 26

 Score = 34.7 bits (79), Expect = 5.1,   Method: Composition-based stats.
 Identities = 6/26 (23%), Positives = 12/26 (46%)

Query: 133 IAHDFFYGDEPKFINAVLDKVSRKEE 158
           +          KFIN VL  ++ +++
Sbjct: 1   MTKIXSDEKSSKFINGVLANIAPEDK 26


>gi|259485944|tpe|CBF83395.1| TPA: beta-1,4-glucosidase/seryl tRNA synthase (Eurofung)
           [Aspergillus nidulans FGSC A4]
          Length = 478

 Score = 34.3 bits (78), Expect = 5.2,   Method: Composition-based stats.
 Identities = 19/102 (18%), Positives = 34/102 (33%), Gaps = 5/102 (4%)

Query: 17  GIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGV 76
              R   ++AL+   + G    +   E  +   C D +       +      F   ++G 
Sbjct: 378 SATRKRDIEALFPSRMRGNGLEDAWGEVTSASICTDYQSRRLGTRVRGVKSVFPHTVNGT 437

Query: 77  MDRKQHIDLLISSCLTEKWSFSRLDMILCSILR--AGVLELI 116
                 +   I   L   W   R  ++L  +LR   G  E+I
Sbjct: 438 AVAVPRVLAAI---LENGWDAERKVVVLPEVLRPFMGGAEVI 476


>gi|58580210|ref|YP_199226.1| hypothetical protein XOO0587 [Xanthomonas oryzae pv. oryzae
           KACC10331]
 gi|58424804|gb|AAW73841.1| Sun protein [Xanthomonas oryzae pv. oryzae KACC10331]
          Length = 473

 Score = 34.3 bits (78), Expect = 5.3,   Method: Composition-based stats.
 Identities = 19/108 (17%), Positives = 37/108 (34%), Gaps = 3/108 (2%)

Query: 49  FCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSIL 108
             A+    +  +    D      I   V+ R+   D+ +   L         D  L ++L
Sbjct: 67  LKAELAATLPGIGDPRDRALVEAICFAVIRRRPAYDVALRQWLERPLPPR--DAELKALL 124

Query: 109 RAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRK 156
             G  +L +   +P    +S  V          +   +NA+L +  R+
Sbjct: 125 MVGFAQL-DVLQLPAHAALSATVDACRALGRPRQAGMVNAILRRAQRE 171


>gi|83855202|ref|ZP_00948732.1| ribosomal RNA small subunit methyltransferase B, putative
           [Sulfitobacter sp. NAS-14.1]
 gi|83843045|gb|EAP82212.1| ribosomal RNA small subunit methyltransferase B, putative
           [Sulfitobacter sp. NAS-14.1]
          Length = 406

 Score = 34.3 bits (78), Expect = 5.4,   Method: Composition-based stats.
 Identities = 16/101 (15%), Positives = 34/101 (33%), Gaps = 12/101 (11%)

Query: 59  SVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIEC 118
                 D    + +    +   +  D L+   L++          + + LR G +EL  C
Sbjct: 19  DKLPPDDRARAQRLAMDTLRGMERADRLLQKHLSKYPPL-----TVRNALRVGTVEL--C 71

Query: 119 HSVPVEVIISEYVCIA---HDFFYGDEPKFINAVLDKVSRK 156
                  +++  V +        +       NAVL K++ +
Sbjct: 72  QGGAAHGVVNAMVELVATHKKLGHLK--GLTNAVLRKIAAE 110


>gi|170719272|ref|YP_001746960.1| sun protein [Pseudomonas putida W619]
 gi|169757275|gb|ACA70591.1| sun protein [Pseudomonas putida W619]
          Length = 436

 Score = 34.3 bits (78), Expect = 5.5,   Method: Composition-based stats.
 Identities = 20/101 (19%), Positives = 36/101 (35%), Gaps = 3/101 (2%)

Query: 63  HVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVP 122
             D    + +  G    +    L + +    +  F   D  + ++L  G+ +L     +P
Sbjct: 34  ERDRGLTQDLAFGTARWQPR--LDLLAAQLLQKPFKAADADVQALLLIGLYQLFYTR-IP 90

Query: 123 VEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRSG 163
               I E V  A           +NAVL +  R+ E   +G
Sbjct: 91  AHAAIGETVGCADKLKKPWAKGLLNAVLRRAQREGEALLAG 131


>gi|83941724|ref|ZP_00954186.1| ribosomal RNA small subunit methyltransferase B, putative
           [Sulfitobacter sp. EE-36]
 gi|83847544|gb|EAP85419.1| ribosomal RNA small subunit methyltransferase B, putative
           [Sulfitobacter sp. EE-36]
          Length = 423

 Score = 34.3 bits (78), Expect = 5.5,   Method: Composition-based stats.
 Identities = 16/101 (15%), Positives = 34/101 (33%), Gaps = 12/101 (11%)

Query: 59  SVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIEC 118
                 D    + +    +   +  D L+   L++          + + LR G +EL  C
Sbjct: 36  DKLPPDDRARAQRLAMDTLRGMERADRLLQKHLSKYPPL-----TVRNALRVGTVEL--C 88

Query: 119 HSVPVEVIISEYVCIA---HDFFYGDEPKFINAVLDKVSRK 156
                  +++  V +        +       NAVL K++ +
Sbjct: 89  QGGAAHGVVNAMVELVATHKKLGHLK--GLTNAVLRKIAAE 127


>gi|308188325|ref|YP_003932456.1| ribosomal RNA small subunit methyltransferase B [Pantoea vagans
           C9-1]
 gi|308058835|gb|ADO11007.1| Ribosomal RNA small subunit methyltransferase B [Pantoea vagans
           C9-1]
          Length = 433

 Score = 34.3 bits (78), Expect = 5.7,   Method: Composition-based stats.
 Identities = 19/102 (18%), Positives = 36/102 (35%), Gaps = 3/102 (2%)

Query: 57  VESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELI 116
            +      D    + I  GV+     ++ LI   +      +    +L  ++  G+ +L 
Sbjct: 32  AQKKLSDKDSALVQEICFGVLRTLPQLEALIGRLMER--PLTGKQRVLHYLIMVGLYQLE 89

Query: 117 ECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEE 158
               VP    ++E V  A           +N VL +  R+ E
Sbjct: 90  YTR-VPAHAALAETVAGAEVLKRTSLKGLLNGVLRQFQRQRE 130


>gi|322698342|gb|EFY90113.1| nuclear pore complex subunit Nup133 [Metarhizium acridum CQMa 102]
          Length = 1323

 Score = 34.3 bits (78), Expect = 5.9,   Method: Composition-based stats.
 Identities = 22/149 (14%), Positives = 50/149 (33%), Gaps = 34/149 (22%)

Query: 18  IARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVM 77
           +AR  A+Q L  +  +     ++  +          ++ V ++   +   +         
Sbjct: 596 VARSNALQRL--MQYLNTIGADLDRQTRWNLLYNAEKMHVAALLWKLHEAFTA---SRTA 650

Query: 78  DRKQHIDLLISSCLT---EKWSFSRLDMILCS-------ILRAGV-----LELIEC---- 118
           + K+ I  LI   +    +    + +  +          I R  +      ++I+     
Sbjct: 651 EDKKSIIGLIVEFIHQDQKNNPIASIGEVDRVRHWFVNDIFRLEILVTFAYQVIKVLYAD 710

Query: 119 ---HSVPVEVIISEYVCI-------AHDF 137
                V V ++I+E V I       AH+F
Sbjct: 711 KLLDDVKVNILINEAVEINVTAQAGAHEF 739


>gi|315635055|ref|ZP_07890336.1| RNA methyltransferase Sun [Aggregatibacter segnis ATCC 33393]
 gi|315476317|gb|EFU67068.1| RNA methyltransferase Sun [Aggregatibacter segnis ATCC 33393]
          Length = 453

 Score = 34.3 bits (78), Expect = 6.1,   Method: Composition-based stats.
 Identities = 7/38 (18%), Positives = 14/38 (36%)

Query: 121 VPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEE 158
           +P    + E V              +N VL +  R+++
Sbjct: 105 IPAHAAVDEVVNATKSLKSDSFRGLVNGVLRRFLREQD 142


>gi|294056140|ref|YP_003549798.1| Fmu (Sun) domain protein [Coraliomargarita akajimensis DSM 45221]
 gi|293615473|gb|ADE55628.1| Fmu (Sun) domain protein [Coraliomargarita akajimensis DSM 45221]
          Length = 421

 Score = 34.3 bits (78), Expect = 6.2,   Method: Composition-based stats.
 Identities = 13/81 (16%), Positives = 26/81 (32%), Gaps = 6/81 (7%)

Query: 73  IHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVC 132
            +G +         +   L ++        +  +IL     E+        +++    V 
Sbjct: 56  FYGAIRHGHRCRAALKPHLRKQPR----PRVE-AILLVAGAEICTEAEKAPKIV-HHAVD 109

Query: 133 IAHDFFYGDEPKFINAVLDKV 153
            A       E   INA+L K+
Sbjct: 110 RAKQLVKSGELGLINALLRKL 130


>gi|240947872|ref|ZP_04752312.1| ribosomal RNA small subunit methyltransferase B [Actinobacillus
           minor NM305]
 gi|240297834|gb|EER48270.1| ribosomal RNA small subunit methyltransferase B [Actinobacillus
           minor NM305]
          Length = 444

 Score = 33.9 bits (77), Expect = 7.1,   Method: Composition-based stats.
 Identities = 32/169 (18%), Positives = 50/169 (29%), Gaps = 42/169 (24%)

Query: 1   MTIQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESV 60
           M +  N+K  K  + R +A    +Q L Q    G S   +I E              +S 
Sbjct: 1   MKVTKNRKMKKKQNARAVAAHIILQVLDQ----GKSLATLIPE-------------AQSQ 43

Query: 61  YLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHS 120
               DL   + I  GV      ++ +I   + +                 G   L+ C  
Sbjct: 44  VESKDLPLVQEIAFGVCRVLPRLENIIKQLVEK--PLK------------GKTRLVHCLL 89

Query: 121 -----------VPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEE 158
                      VP    + E V               N VL +  R++E
Sbjct: 90  LVGLYQLLYMRVPAHAAVDEVVNATKSLKLDSFRALTNGVLRRFLREQE 138


>gi|254509818|ref|ZP_05121885.1| Fmu (Sun) [Rhodobacteraceae bacterium KLH11]
 gi|221533529|gb|EEE36517.1| Fmu (Sun) [Rhodobacteraceae bacterium KLH11]
          Length = 419

 Score = 33.9 bits (77), Expect = 7.7,   Method: Composition-based stats.
 Identities = 27/144 (18%), Positives = 52/144 (36%), Gaps = 20/144 (13%)

Query: 12  LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71
           +S+    AR +A+  L QI   G    E ++     R   +            D    + 
Sbjct: 1   MSNSATAARRSAIYLLDQILGEGRLLPECLAAGALDRLAPE------------DRARAQR 48

Query: 72  IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEV-IISEY 130
           +    +   +  D L++  L +  +       + + LR G +EL +  +    V  + E 
Sbjct: 49  LTIETLRGLERADRLLADHLRQTPAL-----TVHNALRLGTVELCQGEAAHGVVNAMVEI 103

Query: 131 VCIAHDFFYGDEPKFINAVLDKVS 154
           V  +           +NAVL K++
Sbjct: 104 VGRSRKHGRLK--GLVNAVLRKIA 125


>gi|330901617|gb|EGH33036.1| amino acid adenylation [Pseudomonas syringae pv. japonica str.
           M301072PT]
          Length = 298

 Score = 33.9 bits (77), Expect = 7.9,   Method: Composition-based stats.
 Identities = 19/97 (19%), Positives = 37/97 (38%), Gaps = 6/97 (6%)

Query: 14  HRRGIARLAAVQALYQ---IDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFR 70
             R ++R  A Q L+     D    S  +I   +E +R      ++  + +   D    R
Sbjct: 145 RSRFVSREGAAQVLFAPTCADAT-LSVEDI--RHEPHRLQEAIRVEAVAPFNLADGPLIR 201

Query: 71  VIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSI 107
             +  V D +  + L +   + + WS   L   L ++
Sbjct: 202 AHLLHVADDRHVLLLTMHHIVADGWSMGVLSQELLAL 238


>gi|330720125|gb|EGG98529.1| Ribosomal RNA small subunit methyltransferase B [gamma
           proteobacterium IMCC2047]
          Length = 436

 Score = 33.9 bits (77), Expect = 8.1,   Method: Composition-based stats.
 Identities = 21/102 (20%), Positives = 35/102 (34%), Gaps = 3/102 (2%)

Query: 58  ESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIE 117
             +    D    + +  GV    Q ++  I   L +       D+ +  +L    LE   
Sbjct: 33  PEILSSQDQALLQELCFGVCRWYQRLNAQIDMLLDKPLKAKDTDVKVLLLLGLYQLEFTR 92

Query: 118 CHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEI 159
              +P    ISE V              INA+L +  R++E 
Sbjct: 93  ---IPAHAAISETVQACKQLKKASASGLINAILRRSQREKEA 131


  Database: nr
    Posted date:  May 22, 2011 12:22 AM
  Number of letters in database: 999,999,966
  Number of sequences in database:  2,987,313
  
  Database: /data/usr2/db/fasta/nr.01
    Posted date:  May 22, 2011 12:30 AM
  Number of letters in database: 999,999,796
  Number of sequences in database:  2,903,041
  
  Database: /data/usr2/db/fasta/nr.02
    Posted date:  May 22, 2011 12:36 AM
  Number of letters in database: 999,999,281
  Number of sequences in database:  2,904,016
  
  Database: /data/usr2/db/fasta/nr.03
    Posted date:  May 22, 2011 12:41 AM
  Number of letters in database: 999,999,960
  Number of sequences in database:  2,935,328
  
  Database: /data/usr2/db/fasta/nr.04
    Posted date:  May 22, 2011 12:46 AM
  Number of letters in database: 842,794,627
  Number of sequences in database:  2,394,679
  
Lambda     K      H
   0.312    0.170    0.550 

Lambda     K      H
   0.267   0.0518    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,784,748,491
Number of Sequences: 14124377
Number of extensions: 186894806
Number of successful extensions: 565402
Number of sequences better than 10.0: 3669
Number of HSP's better than 10.0 without gapping: 4027
Number of HSP's successfully gapped in prelim test: 1519
Number of HSP's that attempted gapping in prelim test: 555177
Number of HSP's gapped (non-prelim): 5874
length of query: 170
length of database: 4,842,793,630
effective HSP length: 129
effective length of query: 41
effective length of database: 3,020,748,997
effective search space: 123850708877
effective search space used: 123850708877
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (20.6 bits)
S2: 76 (33.5 bits)